BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (1407 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q492C0 DNA-directed RNA polymerase subunit beta' n=74 T... 2408 0.0 UniRef50_A4SHV0 DNA-directed RNA polymerase subunit beta' n=23 T... 2322 0.0 UniRef50_A0L5W7 DNA-directed RNA polymerase subunit beta' n=4 Ta... 1734 0.0 UniRef50_A1ALT5 DNA-directed RNA polymerase subunit beta' n=2 Ta... 1707 0.0 UniRef50_Q2N5Q5 DNA-directed RNA polymerase subunit beta' n=126 ... 1636 0.0 UniRef50_Q5GRY9 DNA-directed RNA polymerase subunit beta' n=1189... 1478 0.0 UniRef50_C1A6N8 DNA-directed RNA polymerase n=2 Tax=Bacteria Rep... 1429 0.0 UniRef50_B2UQY1 DNA-directed RNA polymerase subunit beta' n=5 Ta... 1429 0.0 UniRef50_Q7URW4 DNA-directed RNA polymerase subunit beta' n=8 Ta... 1417 0.0 UniRef50_B2KEN0 DNA-directed RNA polymerase subunit beta' n=1 Ta... 1410 0.0 UniRef50_Q2S1Q6 DNA-directed RNA polymerase subunit beta' n=62 T... 1380 0.0 UniRef50_C8PSU9 DNA-directed RNA polymerase n=2 Tax=Spirochaetac... 1377 0.0 UniRef50_UPI00016C3582 DNA-directed RNA polymerase beta chain n=... 1372 0.0 UniRef50_D2QMP3 DNA-directed RNA polymerase, beta' subunit n=4 T... 1367 0.0 UniRef50_Q3KM48 DNA-directed RNA polymerase subunit beta' n=63 T... 1351 0.0 UniRef50_A3EVS7 DNA-directed RNA polymerase n=9 Tax=Bacteria Rep... 1337 0.0 UniRef50_B0SAG0 DNA-directed RNA polymerase subunit beta' n=33 T... 1327 0.0 UniRef50_Q8RHI7 DNA-directed RNA polymerase subunit beta' n=22 T... 1295 0.0 UniRef50_C9RPE5 DNA-directed RNA polymerase n=1 Tax=Fibrobacter ... 1290 0.0 UniRef50_Q3ATP4 DNA-directed RNA polymerase subunit beta' n=12 T... 1271 0.0 UniRef50_B1GZ76 DNA-directed RNA polymerase subunit beta' n=2 Ta... 1181 0.0 UniRef50_A5D5I3 DNA-directed RNA polymerase subunit beta' n=11 T... 1170 0.0 UniRef50_B2V7L9 DNA-directed RNA polymerase subunit beta' n=11 T... 1170 0.0 UniRef50_C9RQN4 DNA-directed RNA polymerase n=1 Tax=Fibrobacter ... 1169 0.0 UniRef50_A5N4P0 DNA-directed RNA polymerase subunit beta' n=5 Ta... 1145 0.0 UniRef50_C0QQL7 DNA-directed RNA polymerase n=7 Tax=Bacteria Rep... 1137 0.0 UniRef50_C5SEJ2 DNA-directed RNA polymerase n=6 Tax=Proteobacter... 1134 0.0 UniRef50_B0VGC0 DNA-directed RNA polymerase n=2 Tax=Bacteria Rep... 1130 0.0 UniRef50_B2UUV9 DNA-directed RNA polymerase subunit beta' n=5926... 1106 0.0 UniRef50_A9KJL3 DNA-directed RNA polymerase subunit beta' n=170 ... 1105 0.0 UniRef50_C7GZQ7 DNA-directed RNA polymerase n=2 Tax=Clostridiale... 1102 0.0 UniRef50_B0S2E5 DNA-directed RNA polymerase subunit beta' n=47 T... 1102 0.0 UniRef50_A8Z5T2 DNA-directed RNA polymerase subunit beta' n=30 T... 1076 0.0 UniRef50_Q04E86 DNA-directed RNA polymerase subunit beta' n=228 ... 1072 0.0 UniRef50_UPI0001C379E7 DNA-directed RNA polymerase subunit beta'... 1066 0.0 UniRef50_A8YXJ9 DNA-directed RNA polymerase subunit beta' n=25 T... 1033 0.0 UniRef50_C4ZB95 DNA-directed RNA polymerase n=5 Tax=Firmicutes R... 992 0.0 UniRef50_Q3ZX00 DNA-directed RNA polymerase subunit beta' n=5 Ta... 990 0.0 UniRef50_UPI00016BFCAD DNA-directed RNA polymerase, beta'''' sub... 978 0.0 UniRef50_A8R9Q5 DNA-directed RNA polymerase n=3 Tax=Bacteria Rep... 941 0.0 UniRef50_D1BP71 DNA-directed RNA polymerase n=10 Tax=Veillonella... 935 0.0 UniRef50_C8W807 DNA-directed RNA polymerase n=6 Tax=Actinobacter... 932 0.0 UniRef50_Q8KTP7 DNA-directed RNA polymerase n=1 Tax=Candidatus T... 926 0.0 UniRef50_D1C2J9 DNA-directed RNA polymerase n=1 Tax=Sphaerobacte... 916 0.0 UniRef50_A9NEL8 DNA-directed RNA polymerase subunit beta' n=9 Ta... 914 0.0 UniRef50_B9KZZ3 DNA-directed RNA polymerase n=2 Tax=Bacteria Rep... 909 0.0 UniRef50_Q2W2I2 DNA-directed RNA polymerase subunit beta' n=10 T... 885 0.0 UniRef50_Q2ST47 DNA-directed RNA polymerase subunit beta' n=5 Ta... 876 0.0 UniRef50_A5USR6 DNA-directed RNA polymerase subunit beta' n=5 Ta... 855 0.0 UniRef50_Q05FH9 DNA-directed RNA polymerase subunit beta' n=17 T... 830 0.0 UniRef50_Q1AU23 DNA-directed RNA polymerase subunit beta' n=11 T... 829 0.0 UniRef50_A4FPP2 DNA-directed RNA polymerase subunit beta' n=54 T... 825 0.0 UniRef50_A8LC63 DNA-directed RNA polymerase subunit beta' n=26 T... 819 0.0 UniRef50_UPI0001C30E3D DNA-directed RNA polymerase, beta'''' sub... 815 0.0 UniRef50_D1B5Y2 DNA-directed RNA polymerase n=1 Tax=Thermanaerov... 812 0.0 UniRef50_C1TLI9 DNA-directed RNA polymerase n=1 Tax=Dethiosulfov... 810 0.0 UniRef50_D1Y777 DNA-directed RNA polymerase n=1 Tax=Pyramidobact... 803 0.0 UniRef50_A9B6J1 DNA-directed RNA polymerase subunit beta' n=3 Ta... 796 0.0 UniRef50_C9M941 DNA-directed RNA polymerase n=1 Tax=Jonquetella ... 789 0.0 UniRef50_B3DTE1 DNA-directed RNA polymerase subunit beta' n=50 T... 775 0.0 UniRef50_A4E9H2 DNA-directed RNA polymerase n=1 Tax=Collinsella ... 766 0.0 UniRef50_C4LL70 DNA-directed RNA polymerase subunit beta' n=65 T... 759 0.0 UniRef50_Q1J0P7 DNA-directed RNA polymerase subunit beta' n=11 T... 746 0.0 UniRef50_P47582 DNA-directed RNA polymerase subunit beta' n=6 Ta... 743 0.0 UniRef50_Q3M5C9 DNA-directed RNA polymerase subunit gamma n=11 T... 736 0.0 UniRef50_Q110H2 DNA-directed RNA polymerase subunit gamma n=543 ... 727 0.0 UniRef50_O21238 DNA-directed RNA polymerase n=3 Tax=Eukaryota Re... 724 0.0 UniRef50_A7BVC2 DNA-directed RNA polymerase n=1 Tax=Beggiatoa sp... 714 0.0 UniRef50_C5CGD8 DNA-directed RNA polymerase n=1 Tax=Kosmotoga ol... 673 0.0 UniRef50_A7HNY1 DNA-directed RNA polymerase subunit beta' n=5 Ta... 659 0.0 UniRef50_A9BF32 DNA-directed RNA polymerase subunit beta' n=1 Ta... 654 0.0 UniRef50_Q9MUS6 DNA-directed RNA polymerase subunit beta' n=2 Ta... 651 0.0 UniRef50_B1L934 DNA-directed RNA polymerase subunit beta' n=8 Ta... 651 0.0 UniRef50_B1AIH6 DNA-directed RNA polymerase subunit beta' n=15 T... 620 e-176 UniRef50_C6UN03 DNA-directed RNA polymerase n=1 Tax=Candidatus H... 616 e-174 UniRef50_B5Y993 DNA-directed RNA polymerase n=1 Tax=Coprothermob... 585 e-165 UniRef50_Q9TL05 DNA-directed RNA polymerase subunit beta' n=1 Ta... 580 e-163 UniRef50_B3PM77 DNA-directed RNA polymerase subunit beta' n=2 Ta... 550 e-154 UniRef50_Q1ACN5 DNA-directed RNA polymerase subunit beta' n=2 Ta... 531 e-149 UniRef50_C4XEN7 DNA-directed RNA polymerase n=2 Tax=Mycoplasma R... 520 e-145 UniRef50_Q4A5S8 DNA-directed RNA polymerase subunit beta' n=3 Ta... 519 e-145 UniRef50_Q0P3M5 DNA-directed RNA polymerase subunit beta' n=1 Ta... 514 e-144 UniRef50_Q4A7B0 DNA-directed RNA polymerase subunit beta' n=5 Ta... 511 e-142 UniRef50_Q32RG1 DNA-directed RNA polymerase subunit beta' n=2 Ta... 498 e-139 UniRef50_A4GYP9 DNA-directed RNA polymerase subunit beta' n=15 T... 486 e-135 UniRef50_P56763 DNA-directed RNA polymerase subunit beta' n=180 ... 484 e-135 UniRef50_P49467 DNA-directed RNA polymerase subunit beta' n=4 Ta... 444 e-122 UniRef50_B7T2U0 DNA-directed RNA polymerase n=68 Tax=Magnoliophy... 438 e-120 UniRef50_P23580 DNA-directed RNA polymerase subunit beta' n=2 Ta... 418 e-115 UniRef50_C1KR62 DNA-directed RNA polymerase n=2 Tax=Micromonas R... 396 e-108 UniRef50_Q20EX2 DNA-directed RNA polymerase subunit beta' n=1 Ta... 393 e-107 UniRef50_D0EVW4 DNA-directed RNA polymerase n=1 Tax=Bryopsis hyp... 392 e-107 UniRef50_Q3ZJ92 DNA-directed RNA polymerase subunit beta' n=1 Ta... 392 e-107 UniRef50_C7BEK7 DNA-directed RNA polymerase n=2 Tax=Chlorophyta ... 388 e-106 UniRef50_Q06SJ9 DNA-directed RNA polymerase n=1 Tax=Stigeocloniu... 371 e-100 UniRef50_Q32RY3 DNA-directed RNA polymerase subunit beta' n=1 Ta... 361 1e-97 UniRef50_B8R1B0 DNA-directed RNA polymerase n=2 Tax=Volvox carte... 360 2e-97 UniRef50_B2X2C0 DNA-directed RNA polymerase n=3 Tax=Viridiplanta... 353 3e-95 UniRef50_Q1KVT3 DNA-directed RNA polymerase subunit beta' n=1 Ta... 353 3e-95 UniRef50_D0FXV5 DNA-directed RNA polymerase n=1 Tax=Dunaliella s... 352 5e-95 UniRef50_C0JWJ6 DNA-directed RNA polymerase n=1 Tax=Monomastix s... 350 3e-94 UniRef50_B2X1Z3 DNA-directed RNA polymerase subunit beta' n=103 ... 347 3e-93 UniRef50_Q110H3 DNA-directed RNA polymerase subunit beta' n=5 Ta... 338 7e-91 UniRef50_P22705 DNA-directed RNA polymerase subunit beta' n=8 Ta... 337 1e-90 UniRef50_A6YGE1 DNA-directed RNA polymerase n=1 Tax=Leptosira te... 335 8e-90 UniRef50_B2X257 DNA-directed RNA polymerase n=1 Tax=Floydiella t... 334 1e-89 UniRef50_Q8HUH0 DNA-directed RNA polymerase subunit beta' C-term... 332 9e-89 UniRef50_P56300 DNA-directed RNA polymerase subunit beta' n=1 Ta... 331 1e-88 UniRef50_Q06J18 DNA-directed RNA polymerase subunit beta' n=1 Ta... 330 3e-88 UniRef50_C7BEV4 DNA-directed RNA polymerase n=1 Tax=Parachlorell... 324 2e-86 UniRef50_Q2WGI4 DNA-directed RNA polymerase (Fragment) n=2 Tax=S... 323 4e-86 UniRef50_Q9MTD4 DNA-directed RNA polymerase n=3 Tax=Sarcocystida... 321 1e-85 UniRef50_Q6B8R6 DNA-directed RNA polymerase subunit beta'' n=3 T... 320 2e-85 UniRef50_B5VU95 DNA-directed RNA polymerase n=3 Tax=Cyanobacteri... 317 2e-84 UniRef50_A2C6T1 DNA-directed RNA polymerase subunit beta' n=46 T... 315 1e-83 UniRef50_O78483 DNA-directed RNA polymerase subunit beta'' n=2 T... 312 5e-83 UniRef50_Q7PCJ6 DNA-directed RNA polymerase subunit beta'' n=10 ... 311 1e-82 UniRef50_B2X1Z4 DNA-directed RNA polymerase subunit beta'' n=2 T... 311 2e-82 UniRef50_D0VMX6 DNA-directed RNA polymerase n=1 Tax=Volvox carte... 310 2e-82 UniRef50_Q9MUS7 DNA-directed RNA polymerase subunit beta'' n=2 T... 308 1e-81 UniRef50_C0JX50 DNA-directed RNA polymerase n=1 Tax=Pyramimonas ... 302 6e-80 UniRef50_P48120 DNA-directed RNA polymerase subunit beta'' n=1 T... 300 2e-79 UniRef50_D1J789 DNA-directed RNA polymerase n=1 Tax=Ectocarpus s... 300 2e-79 UniRef50_Q9TM34 DNA-directed RNA polymerase subunit beta'' n=1 T... 298 2e-78 UniRef50_Q7YN58 DNA-directed RNA polymerase n=2 Tax=Eimeriorina ... 295 6e-78 UniRef50_D1GJH4 DNA-directed RNA polymerase n=1 Tax=Fucus vesicu... 295 8e-78 UniRef50_B2X2C1 DNA-directed RNA polymerase n=1 Tax=Chlamydomona... 295 1e-77 UniRef50_B2XTN4 DNA-directed RNA polymerase n=2 Tax=Heterosigma ... 294 1e-77 UniRef50_C7BEK6 DNA-directed RNA polymerase n=1 Tax=Pedinomonas ... 292 5e-77 UniRef50_Q20EX3 DNA-directed RNA polymerase subunit beta'' n=1 T... 292 8e-77 UniRef50_Q19VA0 DNA-directed RNA polymerase subunit beta'' n=2 T... 291 1e-76 UniRef50_Q4G3A5 DNA-directed RNA polymerase subunit beta'' n=1 T... 290 2e-76 UniRef50_Q1KVX8 DNA-directed RNA polymerase subunit beta'' n=2 T... 290 2e-76 UniRef50_A0T0D9 DNA-directed RNA polymerase subunit beta'' n=1 T... 290 4e-76 UniRef50_B7T1S4 DNA-directed RNA polymerase n=1 Tax=Vaucheria li... 290 4e-76 UniRef50_Q9TL04 DNA-directed RNA polymerase subunit beta'' n=1 T... 290 4e-76 UniRef50_B2X258 DNA-directed RNA polymerase n=2 Tax=cellular org... 288 1e-75 UniRef50_C7BEV3 DNA-directed RNA polymerase n=1 Tax=Parachlorell... 288 1e-75 UniRef50_C7BEC5 DNA-directed RNA polymerase n=1 Tax=Oocystis sol... 287 2e-75 UniRef50_A0T0Q9 DNA-directed RNA polymerase subunit beta'' n=2 T... 286 3e-75 UniRef50_D0FY22 DNA-directed RNA polymerase n=1 Tax=Dunaliella s... 281 1e-73 UniRef50_P49468 DNA-directed RNA polymerase subunit beta'' n=1 T... 279 7e-73 UniRef50_Q3ZJ90 DNA-directed RNA polymerase subunit beta'' n=3 T... 278 1e-72 UniRef50_C0JWJ8 DNA-directed RNA polymerase n=1 Tax=Monomastix s... 275 8e-72 UniRef50_C6KJ15 DNA-directed RNA polymerase n=2 Tax=Pelagophycea... 275 1e-71 UniRef50_Q06SF2 DNA-directed RNA polymerase subunit beta'' n=2 T... 274 2e-71 UniRef50_Q1ACN4 DNA-directed RNA polymerase subunit beta'' n=1 T... 270 2e-70 UniRef50_Q0P3M4 DNA-directed RNA polymerase subunit beta'' n=1 T... 270 3e-70 UniRef50_P12465 DNA-directed RNA polymerase subunit beta'' n=2 T... 270 4e-70 UniRef50_C1KRB0 DNA-directed RNA polymerase n=1 Tax=Micromonas p... 268 9e-70 UniRef50_Q06J19 DNA-directed RNA polymerase subunit beta'' n=1 T... 268 1e-69 UniRef50_C1KR61 DNA-directed RNA polymerase n=1 Tax=Micromonas s... 268 2e-69 UniRef50_D2IS78 DNA-directed RNA polymerase n=1 Tax=Cryptomonas ... 267 2e-69 UniRef50_C0JWS3 DNA-directed RNA polymerase n=1 Tax=Pycnococcus ... 262 6e-68 UniRef50_Q32RG2 DNA-directed RNA polymerase subunit beta'' n=1 T... 262 8e-68 UniRef50_P21422 DNA-directed RNA polymerase subunit beta' n=6 Ta... 256 5e-66 UniRef50_A2T322 DNA-directed RNA polymerase subunit beta'' n=3 T... 256 6e-66 UniRef50_A6NYC6 DNA-directed RNA polymerase n=1 Tax=Bacteroides ... 255 1e-65 UniRef50_P60290 DNA-directed RNA polymerase subunit beta'' n=2 T... 254 1e-65 UniRef50_P23581 DNA-directed RNA polymerase subunit beta'' n=2 T... 253 4e-65 UniRef50_B9VH97 DNA-directed RNA polymerase n=1 Tax=Syntrichia r... 253 4e-65 UniRef50_Q8MA10 DNA-directed RNA polymerase subunit beta'' n=1 T... 250 3e-64 UniRef50_C1QDX2 RNA polymerase Rpb1 n=1 Tax=Brachyspira murdochi... 248 9e-64 UniRef50_P06274 DNA-directed RNA polymerase subunit beta'' n=9 T... 247 2e-63 UniRef50_P60289 DNA-directed RNA polymerase subunit beta'' n=22 ... 247 3e-63 UniRef50_P41606 DNA-directed RNA polymerase subunit beta'' n=45 ... 247 3e-63 UniRef50_B1VKH5 DNA-directed RNA polymerase subunit beta'' n=3 T... 246 3e-63 UniRef50_B2Y1V7 DNA-directed RNA polymerase subunit beta'' n=3 T... 246 4e-63 UniRef50_Q32RY2 DNA-directed RNA polymerase subunit beta'' n=1 T... 246 6e-63 UniRef50_A9XWC8 DNA-directed RNA polymerase (Fragment) n=5 Tax=m... 244 1e-62 UniRef50_P41556 DNA-directed RNA polymerase subunit A' n=22 Tax=... 244 2e-62 UniRef50_P56764 DNA-directed RNA polymerase subunit beta'' n=192... 244 3e-62 UniRef50_Q85C71 DNA-directed RNA polymerase subunit beta'' n=1 T... 240 3e-61 UniRef50_B7ZIB6 DNA-directed RNA polymerase n=1 Tax=Gnetum parvi... 239 6e-61 UniRef50_Q2EEW9 DNA-directed RNA polymerase subunit gamma n=2 Ta... 239 7e-61 UniRef50_C7DHC4 DNA-directed RNA polymerase n=1 Tax=Candidatus M... 237 2e-60 UniRef50_UPI0001C41F18 DNA-directed RNA polymerase subunit A'' R... 237 3e-60 UniRef50_O27125 DNA-directed RNA polymerase subunit A' n=5 Tax=A... 237 3e-60 UniRef50_Q01923 DNA-directed RNA polymerase subunit beta'' n=469... 237 3e-60 UniRef50_B0EG66 DNA-directed RNA polymerase n=2 Tax=Entamoeba Re... 236 4e-60 UniRef50_B7ZIF3 DNA-directed RNA polymerase n=1 Tax=Ephedra equi... 235 1e-59 UniRef50_C7P941 DNA-directed RNA polymerase n=26 Tax=root RepID=... 235 1e-59 UniRef50_Q9HM79 DNA-directed RNA polymerase subunit A' n=16 Tax=... 234 3e-59 UniRef50_A9XWB0 DNA-directed RNA polymerase (Fragment) n=3 Tax=f... 233 3e-59 UniRef50_P11512 DNA-directed RNA polymerase subunit A' n=23 Tax=... 231 1e-58 UniRef50_A9XWB4 DNA-directed RNA polymerase (Fragment) n=3 Tax=f... 231 2e-58 UniRef50_C7B2E5 DNA-directed RNA polymerase (Fragment) n=1 Tax=S... 229 6e-58 UniRef50_Q2EEX0 DNA-directed RNA polymerase subunit beta'' n=1 T... 227 2e-57 UniRef50_Q85FM9 DNA-directed RNA polymerase subunit beta'' n=3 T... 221 2e-55 UniRef50_A9CTM9 DNA-directed RNA polymerase n=1 Tax=Enterocytozo... 216 4e-54 UniRef50_O96452 DNA-directed RNA polymerase n=3 Tax=Eukaryota Re... 216 5e-54 UniRef50_A6YGE2 DNA-directed RNA polymerase n=2 Tax=cellular org... 215 1e-53 UniRef50_Q9AXN0 DNA-directed RNA polymerase n=4 Tax=Rhodophyta R... 214 3e-53 UniRef50_C0JWS4 DNA-directed RNA polymerase n=1 Tax=Pycnococcus ... 213 4e-53 UniRef50_B8BQ02 DNA-directed RNA polymerase n=1 Tax=Thalassiosir... 212 1e-52 UniRef50_Q74M69 DNA-directed RNA polymerase n=1 Tax=Nanoarchaeum... 211 1e-52 UniRef50_A7BNB4 DNA-directed RNA polymerase beta chain n=1 Tax=B... 208 1e-51 UniRef50_P24928 DNA-directed RNA polymerase II subunit RPB1 n=93... 206 4e-51 UniRef50_D2VMG0 RNA polymerase II largest subunit n=1 Tax=Naegle... 203 4e-50 UniRef50_A9CTJ8 DNA-directed RNA polymerase n=1 Tax=Enterocytozo... 201 1e-49 UniRef50_B1L739 DNA-directed RNA polymerase n=1 Tax=Candidatus K... 201 1e-49 UniRef50_P09846 DNA-directed RNA polymerase subunit A' n=4 Tax=M... 201 2e-49 UniRef50_A6G6S9 DNA-directed RNA polymerase n=1 Tax=Plesiocystis... 200 3e-49 UniRef50_B9GIK9 DNA-directed RNA polymerase n=2 Tax=Magnoliophyt... 200 3e-49 UniRef50_Q8TXI8 DNA-directed RNA polymerase n=1 Tax=Methanopyrus... 200 3e-49 UniRef50_Q8SS15 DNA-directed RNA polymerase n=2 Tax=Apansporobla... 200 3e-49 UniRef50_Q84KP6 DNA-directed RNA polymerase n=6 Tax=Eukaryota Re... 199 6e-49 UniRef50_Q7X881 DNA-directed RNA polymerase n=6 Tax=Magnoliophyt... 198 1e-48 UniRef50_D1H4X6 DNA-directed RNA polymerase (Fragment) n=1 Tax=V... 197 2e-48 UniRef50_C5KZ53 DNA-directed RNA polymerase n=4 Tax=Perkinsus ma... 192 8e-47 UniRef50_D1HEN1 DNA-directed RNA polymerase (Fragment) n=1 Tax=V... 192 1e-46 UniRef50_Q86AQ5 DNA-directed RNA polymerase III subunit rpc1 n=8... 190 3e-46 UniRef50_D2VNK8 RNA polymerase II n=2 Tax=Naegleria gruberi RepI... 190 4e-46 UniRef50_Q98RN1 DNA-directed RNA polymerase n=1 Tax=Guillardia t... 189 5e-46 UniRef50_D0NAG7 DNA-directed RNA polymerase n=1 Tax=Phytophthora... 189 7e-46 UniRef50_A4S3M0 DNA-directed RNA polymerase n=34 Tax=Eukaryota R... 189 9e-46 UniRef50_A8IRZ2 DNA-directed RNA polymerase n=3 Tax=Eukaryota Re... 189 1e-45 UniRef50_P04052 DNA-directed RNA polymerase II subunit RPB1 n=13... 188 1e-45 UniRef50_C4M5C2 DNA-directed RNA polymerase n=4 Tax=Entamoeba Re... 188 2e-45 UniRef50_Q3SE61 DNA-directed RNA polymerase n=2 Tax=Paramecium t... 186 5e-45 UniRef50_A9XW86 DNA-directed RNA polymerase (Fragment) n=2 Tax=M... 186 9e-45 UniRef50_P35084 DNA-directed RNA polymerase II subunit rpb1 n=10... 182 7e-44 UniRef50_Q0U9K8 DNA-directed RNA polymerase n=242 Tax=root RepID... 182 7e-44 UniRef50_A1YIC5 DNA-directed RNA polymerase (Fragment) n=1 Tax=C... 182 7e-44 UniRef50_C4VAM1 DNA-directed RNA polymerase n=1 Tax=Nosema ceran... 182 1e-43 UniRef50_Q9BMP2 DNA-directed RNA polymerase (Fragment) n=1 Tax=S... 182 1e-43 UniRef50_Q9LVH0 DNA-directed RNA polymerase n=7 Tax=Eukaryota Re... 181 2e-43 UniRef50_C5DJG5 DNA-directed RNA polymerase n=3 Tax=Saccharomyce... 181 2e-43 UniRef50_D1ISC7 DNA-directed RNA polymerase (Fragment) n=1 Tax=V... 181 2e-43 UniRef50_C5YGY9 DNA-directed RNA polymerase n=716 Tax=Eukaryota ... 180 3e-43 UniRef50_D2V0G9 Predicted protein n=1 Tax=Naegleria gruberi RepI... 180 5e-43 UniRef50_B9S1B4 DNA-directed RNA polymerase n=1 Tax=Ricinus comm... 178 1e-42 UniRef50_Q9BHM4 DNA-directed RNA polymerase (Fragment) n=1 Tax=P... 178 1e-42 UniRef50_Q7YN59 RNA polymerase C2 n=1 Tax=Eimeria tenella RepID=... 177 3e-42 UniRef50_Q8SSC4 DNA-directed RNA polymerase II subunit RPB1 n=17... 176 5e-42 UniRef50_Q3LWE3 DNA-directed RNA polymerase n=1 Tax=Bigelowiella... 175 1e-41 UniRef50_Q4A369 DNA-directed RNA polymerase n=2 Tax=dsDNA viruse... 174 2e-41 UniRef50_A7AP17 DNA-directed RNA polymerase n=1 Tax=Babesia bovi... 174 3e-41 UniRef50_Q9BHZ7 DNA-directed RNA polymerase (Fragment) n=1 Tax=L... 174 3e-41 UniRef50_Q5CUJ2 DNA-directed RNA polymerase (Fragment) n=6 Tax=E... 173 4e-41 UniRef50_P04050 DNA-directed RNA polymerase II subunit RPB1 n=21... 173 5e-41 UniRef50_Q9AVW8 DNA-directed RNA polymerase n=2 Tax=Cryptophyta ... 172 6e-41 UniRef50_Q2WGI5 RNA polymerase beta'' chain (Fragment) n=1 Tax=S... 172 8e-41 UniRef50_B6AG69 DNA-directed RNA polymerase n=1 Tax=Cryptosporid... 172 8e-41 UniRef50_Q27095 DNA-directed RNA polymerase n=2 Tax=Trichomonas ... 172 9e-41 UniRef50_P04051 DNA-directed RNA polymerase III subunit RPC1 n=1... 171 2e-40 UniRef50_Q5CWY0 DNA-directed RNA polymerase n=3 Tax=Cryptosporid... 171 2e-40 UniRef50_O94666 DNA-directed RNA polymerase III subunit rpc1 n=5... 169 9e-40 UniRef50_B9PZ91 DNA-directed RNA polymerase n=3 Tax=Toxoplasma g... 168 1e-39 UniRef50_Q4SF83 DNA-directed RNA polymerase (Fragment) n=1 Tax=T... 167 2e-39 >UniRef50_Q492C0 DNA-directed RNA polymerase subunit beta' n=74 Tax=Bacteria RepID=RPOC_BLOPB Length = 1416 Score = 2408 bits (6241), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1161/1412 (82%), Positives = 1285/1412 (91%), Gaps = 13/1412 (0%) Query: 1 MKDLLKFLKAQ-TKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCA 59 MKDLL+F K Q T+ EEF+AIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCA Sbjct: 1 MKDLLRFFKIQHTQIEEFNAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCA 60 Query: 60 RIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKS 119 RIFGP+KDYECLCGKYKRLKHRGV+CEKCGVEVTQ+KVRRERMGHIELASPTAHIWFLKS Sbjct: 61 RIFGPIKDYECLCGKYKRLKHRGVVCEKCGVEVTQSKVRRERMGHIELASPTAHIWFLKS 120 Query: 120 LPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAK 179 LPSRIGLLLDMPLRDIERVLYFESYVV+E GMT+LE +Q+LTEE+YLDALEEFGDEF+AK Sbjct: 121 LPSRIGLLLDMPLRDIERVLYFESYVVVESGMTSLECRQVLTEEEYLDALEEFGDEFEAK 180 Query: 180 MGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMIL 239 MGAEAIQ LL++ +L+ ECE LRE L +++SETKRKK+TKRIKL+EAF+ S NKPEWM+L Sbjct: 181 MGAEAIQILLRNTNLKNECEYLREILEDSHSETKRKKITKRIKLIEAFIYSENKPEWMVL 240 Query: 240 TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRML 299 VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAP+IIVRNEKRML Sbjct: 241 NVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPEIIVRNEKRML 300 Query: 300 QEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP 359 QEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP Sbjct: 301 QEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP 360 Query: 360 YLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREH 419 YL+LHQCGLPKKMALELFKPFIYGKLEL+G A+TIKAAKKMV+REEAVVWDILD VIREH Sbjct: 361 YLKLHQCGLPKKMALELFKPFIYGKLELQGFASTIKAAKKMVDREEAVVWDILDNVIREH 420 Query: 420 PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLE 479 PV+LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLE Sbjct: 421 PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLE 480 Query: 480 ARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRS 539 ARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTR+ NAKGEGMVLTGPKEAE LYR Sbjct: 481 ARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRERSNAKGEGMVLTGPKEAECLYRL 540 Query: 540 GLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKK 599 GLA LHAR+K+RITEYE D NGE KT+L ++T+GR+ILWMIVPKGLP+ +VNQ LGKK Sbjct: 541 GLADLHARIKIRITEYEYDKNGEWSKKTNLVNSTIGRSILWMIVPKGLPFILVNQVLGKK 600 Query: 600 AISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEA 659 AIS MLN CYR+LG+K TVI ADQIMYTGFAYAARSGASVGIDDM+IP KK +II EAE+ Sbjct: 601 AISTMLNNCYRLLGMKATVILADQIMYTGFAYAARSGASVGIDDMMIPSKKADIIDEAES 660 Query: 660 EVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSF 719 EV EIQEQFQ+GLVTAGERYNKVIDIWAAAN+RV++AMMDNL TETV+NR+GQ E Q SF Sbjct: 661 EVVEIQEQFQTGLVTAGERYNKVIDIWAAANERVAQAMMDNLATETVMNRNGQLENQASF 720 Query: 720 NSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA 779 N+I+MMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA Sbjct: 721 NNIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA 780 Query: 780 RKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRV 839 RKGLADTALKTANSGYLTRRLVDVAQDLV+T+DDC T GI+M+PVIEGGDVKEPLR+RV Sbjct: 781 RKGLADTALKTANSGYLTRRLVDVAQDLVITQDDCDTFSGIVMSPVIEGGDVKEPLRERV 840 Query: 840 LGRVTAEDVLKPGT---ADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCA 896 LGRV AED+L+ + +L+ RNTLL E WCD+L+E+S+D VKVRSVV+CDTDFGVC+ Sbjct: 841 LGRVLAEDILESNADTDSKVLIVRNTLLDEYWCDVLDEHSIDTVKVRSVVTCDTDFGVCS 900 Query: 897 HCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKG 956 CYGRDLARG I+NKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASR+A ESSIQ+KN G Sbjct: 901 KCYGRDLARGQIVNKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRSALESSIQIKNTG 960 Query: 957 SIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGET 1016 ++ L N+KSV+N GKLV+ SRNTELK+ID+F RTKESYKVPYGAV+ K + E+V GE Sbjct: 961 TVCLKNIKSVINGEGKLVVISRNTELKIIDQFSRTKESYKVPYGAVITKKNEEKVIHGEI 1020 Query: 1017 VANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRP 1076 VA WDPHTMPVI EVSGF++F D+IDGQ+I +QTDELTGL+S+VVLD++ER + KDLRP Sbjct: 1021 VAYWDPHTMPVIAEVSGFIQFIDLIDGQSIVKQTDELTGLTSIVVLDTSERVSSAKDLRP 1080 Query: 1077 ALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITG 1136 LKIVD G D+ IPGTD+P QYFLPG+++VQL DG +I GD LAR+P ES GTKDITG Sbjct: 1081 TLKIVDINGYDIFIPGTDVPVQYFLPGRSVVQLVDGSRIICGDILARLPHESSGTKDITG 1140 Query: 1137 GLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQL 1196 GLPRVADLFEARRPKE AILAEISG +SFGKETKGKRRL+I+P++ D YEEMIPKWR L Sbjct: 1141 GLPRVADLFEARRPKESAILAEISGTISFGKETKGKRRLMISPIEDGDVYEEMIPKWRHL 1200 Query: 1197 NVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVI 1256 NVFEGE V+RGD+ISDGPE+PHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVI Sbjct: 1201 NVFEGEYVDRGDIISDGPESPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVI 1260 Query: 1257 VRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLAT 1316 VRQMLRKAT++ +GSSDFL GEQVEYSR+KIANR+LE GKV ++ R+LLGITKASLAT Sbjct: 1261 VRQMLRKATVIRSGSSDFLVGEQVEYSRIKIANRKLENEGKVKISFIRNLLGITKASLAT 1320 Query: 1317 ESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAG 1376 ESFISAASFQETTRVLTE++VAGKRDELRGLKENVIVGRLIPAGTGY+YHQ+R+ R Sbjct: 1321 ESFISAASFQETTRVLTESSVAGKRDELRGLKENVIVGRLIPAGTGYSYHQERVHHRHFS 1380 Query: 1377 E---------APAAPQVTAEDASASLAELLNA 1399 + Q+TA++ASA+L ELLNA Sbjct: 1381 NKKETEKSVITNISSQITADEASANLTELLNA 1412 >UniRef50_A4SHV0 DNA-directed RNA polymerase subunit beta' n=23 Tax=Proteobacteria RepID=RPOC_AERS4 Length = 1434 Score = 2322 bits (6018), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1169/1435 (81%), Positives = 1277/1435 (88%), Gaps = 29/1435 (2%) Query: 1 MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60 MKDLLKFLKAQTKTEEFD+IKI LASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR Sbjct: 1 MKDLLKFLKAQTKTEEFDSIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60 Query: 61 IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120 IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL Sbjct: 61 IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120 Query: 121 PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKM 180 PSRIGLLLDM LRDIERVLYFESYVVIE GMTNLER Q+L+EE YLDALEE+GDEFDAKM Sbjct: 121 PSRIGLLLDMTLRDIERVLYFESYVVIEPGMTNLERSQMLSEENYLDALEEWGDEFDAKM 180 Query: 181 GAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT 240 GAEAI ALL+++DLE E + +REEL++TNSETKRKK TKR+KL+EAF+QSGNKPEWMI+T Sbjct: 181 GAEAILALLRAIDLEGEVKTMREELDQTNSETKRKKTTKRLKLMEAFLQSGNKPEWMIMT 240 Query: 241 VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ 300 VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ Sbjct: 241 VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ 300 Query: 301 EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360 E+VDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP Sbjct: 301 ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT 360 Query: 361 LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP 420 LRLHQCGLPKKMALELFKPFIYGKLE RGLATTIKAAKKMVEREEAVVWDILDEVIREHP Sbjct: 361 LRLHQCGLPKKMALELFKPFIYGKLESRGLATTIKAAKKMVEREEAVVWDILDEVIREHP 420 Query: 421 VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480 VLLNRAPTLHRLGIQAFEP LIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA Sbjct: 421 VLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480 Query: 481 RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSG 540 RALMMSTNNILSPA+GEPIIVPSQDVVLGLYYMTR +NAKGEGMVL GPKEAE++YR+G Sbjct: 481 RALMMSTNNILSPASGEPIIVPSQDVVLGLYYMTRARINAKGEGMVLAGPKEAEKVYRAG 540 Query: 541 LASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIV-------- 592 LA LHARVKVRITEY + A+ LV +T LK+TTVGRAIL +I+PKG+ Y+++ Sbjct: 541 LADLHARVKVRITEYLRQADDSLVERTELKNTTVGRAILSLILPKGMEYALIDEPKVLTA 600 Query: 593 ------------------NQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAAR 634 N+ALGKK IS++LNTCYR GLK TVIFADQ+MYTGF YAA Sbjct: 601 AEQADLDANPQNWIKSVSNKALGKKLISRLLNTCYRKQGLKDTVIFADQLMYTGFHYAAL 660 Query: 635 SGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVS 694 SGASVGIDDMVIP+ K +II+ AEAEVAEIQ+QF SGLVTAGERYNKVIDIWA+AN+RVS Sbjct: 661 SGASVGIDDMVIPDAKKDIIAAAEAEVAEIQDQFLSGLVTAGERYNKVIDIWASANERVS 720 Query: 695 KAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSI 754 KAMM+NL E +N G+EE+Q SFNSI+MMADSGARGSAAQIRQLAGMRGLMAKPDGSI Sbjct: 721 KAMMENLSKERDVNSLGEEEEQASFNSIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSI 780 Query: 755 IETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDC 814 IETPI ANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQD+V+TEDDC Sbjct: 781 IETPIVANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDMVITEDDC 840 Query: 815 GTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTAD-ILVPRNTLLHEQWCDLLE 873 GT EG+ MTP+IEGGDV EPLR+RVLGRV A+DV+KPGT D ILV RNTLL EQ CDLLE Sbjct: 841 GTVEGLWMTPLIEGGDVVEPLRERVLGRVVADDVIKPGTEDEILVARNTLLDEQLCDLLE 900 Query: 874 ENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMR 933 NSVD VKVRS ++C+TDFG CAHCYGRDLARGH++NKGEA+GVIAAQSIGEPGTQLTMR Sbjct: 901 RNSVDRVKVRSAITCETDFGNCAHCYGRDLARGHLVNKGEAVGVIAAQSIGEPGTQLTMR 960 Query: 934 TFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKE 993 TFHIGGAASRAAAESSIQVKN GSIKL N K V NS KLVITSR+TEL ++D+ GRTKE Sbjct: 961 TFHIGGAASRAAAESSIQVKNTGSIKLQNAKFVHNSDDKLVITSRSTELTIMDDMGRTKE 1020 Query: 994 SYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDEL 1053 S+K+PYG+VL DG+ V+ G+TVANWDPHT P+ITEV+G ++F MIDG TITRQTDEL Sbjct: 1021 SHKLPYGSVLEVKDGQAVSAGDTVANWDPHTHPIITEVAGRLQFEHMIDGVTITRQTDEL 1080 Query: 1054 TGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGV 1113 TGLSS+VVLD ER + GK++RP +K+VD G DV+IPGTD+ AQYFLPGKAIV LEDG Sbjct: 1081 TGLSSIVVLDVNERPSAGKEMRPTVKLVDQNGKDVMIPGTDVAAQYFLPGKAIVNLEDGA 1140 Query: 1114 QISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKR 1173 + GD +ARIPQES GTKDITGGLPRVADLFEAR+PKEPAILAEISG +SFGKETKGKR Sbjct: 1141 NVGVGDAVARIPQESSGTKDITGGLPRVADLFEARQPKEPAILAEISGTISFGKETKGKR 1200 Query: 1174 RLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYI 1233 RLVITP DG D YEEMIPKWR LNVFEGE+VE+G+V++DGPE+ HDILRLRG+ V YI Sbjct: 1201 RLVITPTDGGDVYEEMIPKWRNLNVFEGEKVEKGEVLADGPESAHDILRLRGISPVANYI 1260 Query: 1234 VNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELE 1293 NEVQDVYRLQGVKINDKHIEVIVRQMLRK I++AG +D +EGEQVE +RVKIANR+L Sbjct: 1261 ANEVQDVYRLQGVKINDKHIEVIVRQMLRKCEILSAGDTDLIEGEQVEVARVKIANRKLV 1320 Query: 1294 ANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIV 1353 A GK AT+ L+GITKASL+TESFISAASFQETTRVLTEAAV GKRDELRGLKENVIV Sbjct: 1321 AEGKTPATFRHILMGITKASLSTESFISAASFQETTRVLTEAAVGGKRDELRGLKENVIV 1380 Query: 1354 GRLIPAGTGYAYHQDRMRRRAAGEAP-AAPQVTAEDASASLAELLNAGLGGSDNE 1407 GRLIPAGTG+AYH R+ +RAA PQVTA++A +LA+LLNA G D E Sbjct: 1381 GRLIPAGTGFAYHHARINQRAAAARAVGVPQVTADEAQQNLADLLNAS-GSFDEE 1434 >UniRef50_A0L5W7 DNA-directed RNA polymerase subunit beta' n=4 Tax=cellular organisms RepID=RPOC_MAGSM Length = 1412 Score = 1734 bits (4490), Expect = 0.0, Method: Compositional matrix adjust. Identities = 842/1402 (60%), Positives = 1071/1402 (76%), Gaps = 25/1402 (1%) Query: 2 KDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARI 61 + + K + FD I+I++ASP+ IRSWSFGEVKKPETINYRTFKPERDGLFCA+I Sbjct: 20 QSVFKLFSRPMLGQSFDGIRISIASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAKI 79 Query: 62 FGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLP 121 FGPVKDYECLCGKYKRLKHRGV+CEKCGVEV Q+KVRRERMGHIELA+P AHIWFLKSLP Sbjct: 80 FGPVKDYECLCGKYKRLKHRGVVCEKCGVEVIQSKVRRERMGHIELAAPVAHIWFLKSLP 139 Query: 122 SRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMG 181 SRIGLLLDM L+D+ERVLYFE++VV+E GMT ++R ++LTE++Y +EEFGDEF A +G Sbjct: 140 SRIGLLLDMTLKDLERVLYFENFVVLESGMTPMKRGELLTEDRYYQLIEEFGDEFRAGIG 199 Query: 182 AEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTV 241 AEAI+ +L + + +E QLR+EL +T+SE +RKK+ KR+ LEAF S N PEWMIL V Sbjct: 200 AEAIREMLVDLKIPEEINQLRDELRDTSSEARRKKIVKRLHTLEAFQDSKNSPEWMILEV 259 Query: 242 LPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQE 301 +PV+PP+LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL +L APDII+RNEKRMLQE Sbjct: 260 IPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLFELKAPDIIIRNEKRMLQE 319 Query: 302 AVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYL 361 +VDAL DNGRRGR ITG+NKRPLKSL++M+KGKQGRFR NLLGKRVDYSGRSVI VGP L Sbjct: 320 SVDALFDNGRRGRVITGTNKRPLKSLSEMLKGKQGRFRLNLLGKRVDYSGRSVIVVGPEL 379 Query: 362 RLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPV 421 +LH+CGLPKKMALELFKPFIY +LE RGLATTIKAAK+MVE+E+ VWDIL+EVIREHPV Sbjct: 380 KLHECGLPKKMALELFKPFIYNRLEERGLATTIKAAKRMVEKEKGEVWDILEEVIREHPV 439 Query: 422 LLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEAR 481 +LNRAPTLHRLGIQAFEP L+EGKAIQLHPLVC A+NADFDGDQMAVHVPL++EAQ+EAR Sbjct: 440 MLNRAPTLHRLGIQAFEPKLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSIEAQIEAR 499 Query: 482 ALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGL 541 LMMSTNNILSPANG+PIIVP+QD++LGLYYMT + N GEGM+ + E ++ + +G+ Sbjct: 500 VLMMSTNNILSPANGKPIIVPTQDIILGLYYMTSERANVAGEGMIFSNTMEVKQAFDAGV 559 Query: 542 ASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAI 601 A+LHA ++ R G+ V TTVGR +L ++P+ + + +N+ + KK + Sbjct: 560 ANLHASIQCRF-------RGKRV------HTTVGRMLLADMLPERIDFQAINKLITKKEV 606 Query: 602 SKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEV 661 +K+++ YR+ G K TVIF D++M GFA+A R+G S G DDMVIPE K +++ A+ +V Sbjct: 607 TKLIDHTYRMCGTKDTVIFTDRLMAMGFAFACRAGISFGKDDMVIPEAKRKLVDAAQEKV 666 Query: 662 AEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNS 721 EI++Q+ GL+T GE+YNKV+DIW+ +RV+ MM + T+TV+N+DG+ +Q SFNS Sbjct: 667 KEIEKQYTDGLITEGEKYNKVVDIWSHCTERVADEMMGTISTDTVLNKDGEMVEQPSFNS 726 Query: 722 IYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARK 781 I+MMA+SGARGSAAQ+RQLAGMRGLMAKP G I+ETPITANFREGL VLQYFISTHGARK Sbjct: 727 IFMMANSGARGSAAQMRQLAGMRGLMAKPSGEIMETPITANFREGLTVLQYFISTHGARK 786 Query: 782 GLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLG 841 GLADTALKTANSGYLTRRLVDVAQD +V E+DCGT GI + ++EG DV E L DR+LG Sbjct: 787 GLADTALKTANSGYLTRRLVDVAQDCIVREEDCGTSIGITVAALVEGNDVVETLGDRLLG 846 Query: 842 RVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGR 901 R D+ P T ++LV T++ E + +E ++VD+V +RS ++C+T GVC CYGR Sbjct: 847 RTPVSDIKDPITDELLVKAGTIMDEDIVEKIENSNVDSVLIRSPLTCETTRGVCVTCYGR 906 Query: 902 DLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLS 961 DLARG + GEA+GVIAAQSIGEPGTQLTMRTFHIGG ASR A +S + + G +K Sbjct: 907 DLARGTRVTVGEAVGVIAAQSIGEPGTQLTMRTFHIGGTASRQAEQSHQETTHGGVLKFH 966 Query: 962 NVKSVVNSSGKLVITSRNTELKLID--------EFGRTKESYKVPYGAVLAKGDGEQVAG 1013 ++ +V + +G+ V+ SRN+E+ L + E GR +E Y++PYGA ++ G V Sbjct: 967 DLITVQDRAGRYVVLSRNSEVSLHEAVEHEGQVEAGRERERYRIPYGARISSAPGSVVEK 1026 Query: 1014 GETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKD 1073 G T A WDP MP+ITEV G V+F D++DG ++ D+ TGL S V + +++ D Sbjct: 1027 GTTFAEWDPFAMPIITEVEGIVKFGDLVDGVSLRENMDDTTGLISKEVTEWKGQSSKKGD 1086 Query: 1074 LRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKD 1133 +RP + + D N+ L+ +Y+LP A++ + +G + GD +A++ ++S +D Sbjct: 1087 MRPRITLKDVNSNETLMMPNGSECRYYLPVGAVIVVNEGDHVHGGDIIAKVLRQSTKNRD 1146 Query: 1134 ITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKW 1193 ITGGLPRV +LFEAR+PKE + +AE G+V++GK+ KGKRRLV+TP D +P E ++PK Sbjct: 1147 ITGGLPRVVELFEARKPKEHSFIAENEGMVTYGKDLKGKRRLVVTP-DSGEPMEYLLPKG 1205 Query: 1194 RQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHI 1253 +QL V EG+ V +G+ + +G P DIL++ G+ + R++VNE+Q+VYRLQGV+INDKHI Sbjct: 1206 KQLAVNEGDWVRKGEPLMEGSPVPQDILKVLGLEELCRFMVNEIQEVYRLQGVRINDKHI 1265 Query: 1254 EVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKAS 1313 EVIVRQML+K I + G + F+ GEQVE + N + + G AT + LLGITKAS Sbjct: 1266 EVIVRQMLQKVQITDPGDTMFVSGEQVEKDDYLLENVKTDKRGGRVATCTPLLLGITKAS 1325 Query: 1314 LATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQ-DRMRR 1372 L+T SFISAASFQETTRVLTEAA++G+ D L GLKENVIVGRLIPAGTG Q +M Sbjct: 1326 LSTPSFISAASFQETTRVLTEAAISGRVDTLNGLKENVIVGRLIPAGTGNILSQLKKMGS 1385 Query: 1373 RAAGE--APAAPQVTAEDASAS 1392 GE Q A+ AS+S Sbjct: 1386 LTKGEKSTQGGEQHVAKVASSS 1407 >UniRef50_A1ALT5 DNA-directed RNA polymerase subunit beta' n=2 Tax=Bacteria RepID=RPOC_PELPD Length = 1409 Score = 1707 bits (4421), Expect = 0.0, Method: Compositional matrix adjust. Identities = 847/1422 (59%), Positives = 1063/1422 (74%), Gaps = 45/1422 (3%) Query: 1 MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60 M+D F F AI+I+++SP+ IR S GEVKKPETINYRTFKPERDGLFCA+ Sbjct: 1 MEDYFSFFDKPKDPLHFSAIRISVSSPEKIRERSHGEVKKPETINYRTFKPERDGLFCAK 60 Query: 61 IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120 IFGP KDYEC CGKYKR+KHRG+ICEKCGVEV +KVRRER+GHI+LA+P AHIWFLKSL Sbjct: 61 IFGPTKDYECNCGKYKRMKHRGIICEKCGVEVIPSKVRRERLGHIDLATPVAHIWFLKSL 120 Query: 121 PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFG-DEFDAK 179 PSRIG LLD+ L+D+E+VLYFE++V+ + + L+ ++++E+++L A +E+G D F Sbjct: 121 PSRIGNLLDITLKDLEKVLYFEAFVISDPKNSPLQFCEVMSEDKFLKAQQEYGYDAFSGG 180 Query: 180 MGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMIL 239 MGAEAI+ LK++DL++ QLR E+ E+ SE KRKK KR+K+LEAF SGNKPEWMIL Sbjct: 181 MGAEAIRECLKAIDLDELSGQLRTEMMESTSEAKRKKTAKRLKVLEAFKSSGNKPEWMIL 240 Query: 240 TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRML 299 +PVLPP+LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL++L AP++I+RNEKRML Sbjct: 241 ECIPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLVELQAPEVIIRNEKRML 300 Query: 300 QEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP 359 QEAVDAL DNGRRGRAI G NKRPLKSL+DM+KGK GRFRQNLLGKRVDYSGRSVI VGP Sbjct: 301 QEAVDALFDNGRRGRAIAGPNKRPLKSLSDMLKGKSGRFRQNLLGKRVDYSGRSVIVVGP 360 Query: 360 YLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREH 419 L+LHQCGLPKKMALELFKPFIY KLE RG TTIK+AKKMVE+E VWD+L+EVIREH Sbjct: 361 ELKLHQCGLPKKMALELFKPFIYNKLEERGYVTTIKSAKKMVEKERPEVWDVLEEVIREH 420 Query: 420 PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLE 479 PV+LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVC A+NADFDGDQMAVH+PL++E+Q+E Sbjct: 421 PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHLPLSVESQVE 480 Query: 480 ARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRD----------------------- 516 AR LMMSTNNILSPA+G+PIIVPSQD+VLG YYMTRD Sbjct: 481 ARVLMMSTNNILSPAHGKPIIVPSQDMVLGAYYMTRDRRFERVIDETTGKEKIDAESGLP 540 Query: 517 -CVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVG 575 KG G V +GP E + +G + A VKVR+ D +++ DTTVG Sbjct: 541 IYRKVKGTGKVFSGPDEVRIAFDAGEVDMQATVKVRMKNLVSDEKPQMI------DTTVG 594 Query: 576 RAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARS 635 R IL I+P +P+S VN+ + KK +S +++TCYR+ K TVI AD++ GF YA + Sbjct: 595 RVILKEILPDSVPFSAVNKVMNKKELSNLVDTCYRMADNKETVILADKLKDIGFRYANLA 654 Query: 636 GASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSK 695 G S+ +DDMVIPE K EI+++AE EV EIQ Q+ GL+T GERYNKVIDIWA A + ++K Sbjct: 655 GISICLDDMVIPEGKTEILTKAEDEVKEIQNQYTEGLITDGERYNKVIDIWAKATEDIAK 714 Query: 696 AMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSII 755 M+DNL E ++ SFN+I+MMADSGARGS QIRQLAGMRGLMAKP G II Sbjct: 715 EMLDNLSKEKFFVEGVGVSEEASFNAIHMMADSGARGSHQQIRQLAGMRGLMAKPSGEII 774 Query: 756 ETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCG 815 ETPITANFREGL VLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQD ++ E+DCG Sbjct: 775 ETPITANFREGLTVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDAIIAEEDCG 834 Query: 816 THEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEEN 875 T +G++++ + EGG+V E + DR+LGRV +D+L P T D+LV N + E +E+ Sbjct: 835 TLDGLVVSSLTEGGEVIEHIGDRILGRVALDDILDPITGDVLVAANEDIDENLVKRIEDA 894 Query: 876 SVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTF 935 ++ VK+RSV++C + G+C+ CYGRDLARGH +N GEA+GVIAAQSIGEPGTQLTMRTF Sbjct: 895 GLEKVKIRSVLTCQSRRGICSKCYGRDLARGHSVNMGEAVGVIAAQSIGEPGTQLTMRTF 954 Query: 936 HIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESY 995 HIGG ASR A ++S++ + G +K N+ +V+N+ G ++ +RN E+ ++DE GR +E Y Sbjct: 955 HIGGTASRRAEQTSLESRTDGILKFINLNTVINAEGHHIVMNRNGEIAVVDETGREREKY 1014 Query: 996 KVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTG 1055 V YGA + G V G +A WDP+TMP++TE SG V+F D+++G T+ Q DE+TG Sbjct: 1015 LVLYGAKIKIAPGGAVTQGGILAEWDPYTMPILTEFSGKVKFGDIVEGVTMEEQLDEVTG 1074 Query: 1056 LSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI 1115 LS V+++S + D RP + I G D T +YFLP A + ++D I Sbjct: 1075 LSRKVIIESKD-----SDKRPRIAI-KGMGGDSADAVTGTIGRYFLPVGANITVQDDSVI 1128 Query: 1116 SSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRL 1175 S+GD +A+IP+E+ TKDITGGLPRVA+LFEAR+PK+ A+++EI G VS+GK+ KGKR++ Sbjct: 1129 SAGDIIAKIPRETTKTKDITGGLPRVAELFEARKPKDFAVISEIDGRVSYGKDAKGKRKV 1188 Query: 1176 VITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVN 1235 ++TP G +P E +IPK + ++V EG+ V G+ + DG PHDILR+ GV + +Y+V+ Sbjct: 1189 IVTPEMG-EPKEYLIPKGKHISVHEGDHVRAGEPLMDGSSNPHDILRVLGVKELAKYLVD 1247 Query: 1236 EVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEAN 1295 EVQ+VYRLQGVKINDKHIEVIVRQMLR+ I + G + L +QVE + N+++ Sbjct: 1248 EVQEVYRLQGVKINDKHIEVIVRQMLRRVRIKDVGDTSLLVDDQVERWVFETENQKVMNE 1307 Query: 1296 GKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGR 1355 GK A LLGITKASL+TESFISAASFQETT+VLT+AA+ GK D LRGLKENVI+GR Sbjct: 1308 GKRPAIAEPLLLGITKASLSTESFISAASFQETTKVLTQAAIEGKVDYLRGLKENVIMGR 1367 Query: 1356 LIPAGTGY-AYHQDRMRRRA------AGEAPAAPQVTAEDAS 1390 LIPAGTG +Y RM A A E+ P V+ ++A+ Sbjct: 1368 LIPAGTGLSSYRNIRMLTEASEPVAQAAESEDVPDVSQQEAA 1409 >UniRef50_Q2N5Q5 DNA-directed RNA polymerase subunit beta' n=126 Tax=Bacteria RepID=RPOC_ERYLH Length = 1438 Score = 1636 bits (4237), Expect = 0.0, Method: Compositional matrix adjust. Identities = 828/1401 (59%), Positives = 1045/1401 (74%), Gaps = 43/1401 (3%) Query: 1 MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60 M +L KF K E FD I+I +ASP+ IRSWSFGE+KKPETINYRTFKPERDGLFCAR Sbjct: 1 MNELTKFTNQLAKPETFDQIQIGIASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR 60 Query: 61 IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120 IFGPVKDYECLCGKYKR+K++GV+CEKCGVEVT TKVRRERMGHIELA+P AHIWFLKSL Sbjct: 61 IFGPVKDYECLCGKYKRMKYKGVVCEKCGVEVTVTKVRRERMGHIELAAPVAHIWFLKSL 120 Query: 121 PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFG-DEFDAK 179 PSRIGLLLDM L+ +ERVLYFE Y+V E G+T LE+ Q+LTE++ L+A +E+G D F A Sbjct: 121 PSRIGLLLDMQLKQLERVLYFEHYIVTEPGLTPLEKFQLLTEDELLEAQDEYGEDAFSAG 180 Query: 180 MGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMIL 239 +GAEA++ +L +DLEQE E L EEL T S+ K K+ KR+K++E+F++SGN+PEWMIL Sbjct: 181 IGAEAVKFMLMDLDLEQEKEDLLEELATTKSKLKPAKIIKRLKVVESFIESGNRPEWMIL 240 Query: 240 TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRML 299 V+PV+PP+LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL++L APDIIVRNEKRML Sbjct: 241 EVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRML 300 Query: 300 QEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP 359 QE+VDAL DNGRRGR ITG+NKRPLKSL+DM+KGKQGRFRQNLLGKRVDYSGRSVI GP Sbjct: 301 QESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP 360 Query: 360 YLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREH 419 L+LHQCGLPKKMALELFKPFIY +L+ +GL+ T+K AKK VE+E VWDILDEVIREH Sbjct: 361 ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH 420 Query: 420 PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLE 479 PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVC+A+NADFDGDQMAVHVPL+LEAQLE Sbjct: 421 PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE 480 Query: 480 ARALMMSTNNILSPANGEPIIVPSQDVVLGLYYM-------TRDCVNAKGEGMVLTGPK- 531 AR LMMSTNNILSPANG+PIIVPSQD+VLGLYY+ T + + K + P+ Sbjct: 481 ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSMERQEKTPEYIEEKDGTKIEKLPRF 540 Query: 532 ----EAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKG- 586 E + + +LH R+ R+ + ++D E+ TT GR ++ +PK Sbjct: 541 ADMAEVHQALETKSVTLHTRIIARVPQADEDGKPEMKRFV----TTPGRMLIGECLPKNH 596 Query: 587 -LPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMV 645 +PY IVN+ L KK I +++ YR G K TV+FAD IM GF +A ++G S G DDM+ Sbjct: 597 KVPYDIVNRLLTKKEIGDVIDQVYRHTGQKDTVLFADAIMVLGFRHAFKAGISFGKDDMI 656 Query: 646 IPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTET 705 IP+ K +I + + +VA+ ++Q+Q GL+T E+YNKVID W+ D+V++AMMD ++++ Sbjct: 657 IPDSKEGMIEDTKKQVADYEQQYQDGLITQQEKYNKVIDAWSRCGDQVAEAMMDEIKSQK 716 Query: 706 VINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFRE 765 ++DG+E + NSIYMM+ SGARGS AQ++QLAGMRGLMAKP G IIE PI +NF+E Sbjct: 717 -FDKDGKESE---INSIYMMSHSGARGSPAQMKQLAGMRGLMAKPSGEIIENPIISNFKE 772 Query: 766 GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPV 825 GL VL+YF STHGARKGLADTALKTANSGYLTRRLVDV+QD V+ E+DC T + M + Sbjct: 773 GLTVLEYFNSTHGARKGLADTALKTANSGYLTRRLVDVSQDCVIVEEDCKTDNALEMRAI 832 Query: 826 IEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSV 885 ++GG V L +R+LGR +D++ T +++V TLL E +EE V ++RS Sbjct: 833 VQGGSVIASLGERILGRTLVDDLVNAKTDEVIVKAGTLLDEPMVKAIEEAEVQVARIRSP 892 Query: 886 VSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAA 945 + C+ D GVCA CYGRDLARG +N GEA+GVIAAQSIGEPGTQLTMRTFHIGGAA + Sbjct: 893 LVCEADQGVCATCYGRDLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAA-QLN 951 Query: 946 AESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAK 1005 S ++ + G ++ ++ ++ + G+++ +RN EL +ID GR +E +KVPYG VL Sbjct: 952 ETSHLESISDGKVEYRDMPTITDKKGRILSLARNGELAVIDAEGREREIHKVPYGTVLMH 1011 Query: 1006 GDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSA 1065 DG +V G+ +A WDP ++P+ITE SG V++ D+I+G T+ QTD+ TG++ VV ++ Sbjct: 1012 KDGAKVKEGDRLAEWDPFSLPIITEQSGVVKYQDLIEGTTLEEQTDDATGIAQRVVTEN- 1070 Query: 1066 ERTAGGK---DLRPALKIV-DAQGNDVLIPGTDMPAQYFL--PGKAIVQLEDGVQISSGD 1119 R G K DLRP L ++ + Q D + AQ +L PG + + DG + +GD Sbjct: 1071 -RATGRKKKEDLRPRLTLLSEGQSED------ETEAQRYLLAPGTTL-SVTDGQTVEAGD 1122 Query: 1120 TLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITP 1179 LAR +E+ T+DITGGLPRVA+LFEAR PK+ A++A+ISG + F +E K KR++ I P Sbjct: 1123 ILARASREAAKTRDITGGLPRVAELFEARVPKDNAVIAKISGKIEFVREYKAKRKIAIVP 1182 Query: 1180 VDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQD 1239 +G + + +IPK + ++V EG+ V++GD + G PHDIL + GV A+ Y+ E+Q+ Sbjct: 1183 EEG-EAVDYLIPKTKVIDVQEGDFVKKGDTLISGSPNPHDILDVLGVEALAEYLCTEIQE 1241 Query: 1240 VYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVG 1299 VYRLQGVKINDKHIEVIVRQML+K I + G + L GEQV+ + AN +L GK Sbjct: 1242 VYRLQGVKINDKHIEVIVRQMLQKVEITDGGDTVLLPGEQVDRDEMDEANAKL-GRGKKP 1300 Query: 1300 ATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPA 1359 AT + LLGITKASL T SFISAASFQETTRVLT+A+V GK+D L GLKENVIVGRLIPA Sbjct: 1301 ATGNPVLLGITKASLQTRSFISAASFQETTRVLTQASVEGKKDTLIGLKENVIVGRLIPA 1360 Query: 1360 GTGYAYHQDRMRRRAAGEAPA 1380 GTG +RMR A+ A Sbjct: 1361 GTGAGM--NRMRVTASARDAA 1379 >UniRef50_Q5GRY9 DNA-directed RNA polymerase subunit beta' n=1189 Tax=cellular organisms RepID=RPOBC_WOLTR Length = 2839 Score = 1478 bits (3826), Expect = 0.0, Method: Compositional matrix adjust. Identities = 748/1359 (55%), Positives = 978/1359 (71%), Gaps = 29/1359 (2%) Query: 15 EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74 + FD I I++ASP+ I+S S+GEVK T NYRTFK E+ GLFC +IFGPV D ECLCGK Sbjct: 1446 QSFDKIGISIASPENIKSMSYGEVKDVSTANYRTFKVEKGGLFCPKIFGPVNDDECLCGK 1505 Query: 75 YKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRD 134 YK+ +HRG ICEKCGVEVT +KVRRERMGHIELASP AHIWFLKSLPSRIG LLDM LRD Sbjct: 1506 YKKRRHRGRICEKCGVEVTSSKVRRERMGHIELASPVAHIWFLKSLPSRIGALLDMSLRD 1565 Query: 135 IERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFG-DEFDAKMGAEAIQALLKSMD 193 IE +LY ++Y+VI+ ++ E+ +I++E+ Y +A +++G D F A G EAI+ LL +D Sbjct: 1566 IENILYSDNYIVIDPLVSPFEKGEIISEKIYNEAKDDYGIDSFVAMQGVEAIRELLTCLD 1625 Query: 194 LEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLV 253 L Q + LR EL SE +RKK+ KR++++E F++SGN+PEWMILT +P+LPPDLRPLV Sbjct: 1626 LHQIRKDLRLELESVASEIRRKKIIKRLRIIENFIKSGNRPEWMILTTIPILPPDLRPLV 1685 Query: 254 PLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRG 313 L+ GR A SDLN YR +INRNNRL++LL L P+I++RNEKRMLQEAVD+L DN RR Sbjct: 1686 SLESGRPAVSDLNHHYRTIINRNNRLRKLLSLNPPEIMIRNEKRMLQEAVDSLFDNSRRN 1745 Query: 314 RAITGSNKRPL----KSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLP 369 A+T NK KS++DM+KGKQGRFRQNLLGKRVDYSGRSVI VGP L+L+QCGLP Sbjct: 1746 -ALT--NKAGAIGYKKSISDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPALKLNQCGLP 1802 Query: 370 KKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTL 429 K+MALELFKPF+Y KL+L G+A TIK A K++ E+ VWD+L+EVI+EHPVLLNRAPTL Sbjct: 1803 KRMALELFKPFVYSKLKLYGMAPTIKFASKLIRAEKPEVWDMLEEVIKEHPVLLNRAPTL 1862 Query: 430 HRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNN 489 HRLGIQAFEP+LIEGKAIQLHPLVC A+NADFDGDQMAVHVP++LEAQLEAR LMMSTNN Sbjct: 1863 HRLGIQAFEPILIEGKAIQLHPLVCTAFNADFDGDQMAVHVPISLEAQLEARVLMMSTNN 1922 Query: 490 ILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVLTGP-KEAERLYRSGLASLHAR 547 +LSP+NG PIIVPS+D++LG+YY+T ++ + +G+ + G E E G +H+ Sbjct: 1923 VLSPSNGRPIIVPSKDIILGIYYLTLQEQTDKEGDDLPFLGTFGEVEHSLSDGTLHIHSS 1982 Query: 548 VKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPK--GLPYSIVNQALGKKAISKML 605 +K RI EY ++ GE KT TT GR ILW I PK L + +VNQ L K ++ ++ Sbjct: 1983 IKYRI-EY-TNSEGETCYKTI--RTTPGRLILWQIFPKHENLNFDLVNQVLTVKEVTSIV 2038 Query: 606 NTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQ 665 + YR G TV F+D++M GF YA SG S D+VIPE K E + A E+ + Sbjct: 2039 DLIYRNCGQSATVEFSDRLMVLGFEYATFSGISFSRCDLVIPETKAEHVDHARGEIKKFS 2098 Query: 666 EQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMM 725 Q+Q GL+T ERYNKVID W+ D ++ M L++ +V +R+ + +NS+YMM Sbjct: 2099 MQYQDGLITRSERYNKVIDEWSKCTDMIANDM---LKSISVYDRNSK------YNSVYMM 2149 Query: 726 ADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLAD 785 +SGARGS +Q++QLAGMRGLM KP G IIETPI +NFREGLNV +YF STHGARKGLAD Sbjct: 2150 VNSGARGSTSQMKQLAGMRGLMTKPSGEIIETPIISNFREGLNVFEYFNSTHGARKGLAD 2209 Query: 786 TALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTA 845 TALKTANSGYLTRRLVDV+Q+ +VT+ DC T G+++ +EGG + L VLGR A Sbjct: 2210 TALKTANSGYLTRRLVDVSQNCIVTKHDCKTKNGLVVRATVEGGTIVASLESVVLGRTAA 2269 Query: 846 EDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLAR 905 D+ P T ++LV L+ E + +DAVK+RS ++C+ GVC+ CYGRDLA Sbjct: 2270 NDIYNPVTKELLVKAGELIDEDKVKQINIAGLDAVKIRSPLTCEVSPGVCSLCYGRDLAT 2329 Query: 906 GHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKS 965 G I++ GEA+GVIAAQS+GEPGTQLTMRTFHIGG +R S+I IKLSN Sbjct: 2330 GKIVSIGEAVGVIAAQSVGEPGTQLTMRTFHIGGVMTRGVESSNIIASINAKIKLSNSNI 2389 Query: 966 VVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTM 1025 +++ +G + SR+ E+ LID G K + +PYGA L +G+ V G+ +A WDP+T+ Sbjct: 2390 IIDKNGDKIAISRSCEVVLIDSLGSEKLRHSIPYGAKLCVDEGKSVKIGDKIAEWDPYTL 2449 Query: 1026 PVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQG 1085 P+ITE +G V + D+ DG +IT DE TG+SS VV D + +GG +LRP + ++D G Sbjct: 2450 PIITEKTGTVLYQDLKDGVSITEVMDESTGISSKVVKD-WKLYSGGANLRPRIVLLDDNG 2508 Query: 1086 NDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLF 1145 V+ + + A YF+P A++ ++DG ++ +GD + R P+ES T+DITGGLPRV +LF Sbjct: 2509 K-VMTLASGIEACYFIPIGAVLNVQDGQKVHAGDVITRTPRESVKTRDITGGLPRVIELF 2567 Query: 1146 EARRPKEPAILAEISGIVSFG-KETKGKRRLVITPVDGS-DPYEEMIPKWRQLNVFEGER 1203 EARRP+E AI++EI G V F K+ +GKR ++I P++ P E ++ + + + V EG+ Sbjct: 2568 EARRPREHAIVSEIDGHVVFSEKDRRGKRSVLIKPLNEQISPIEYLVSRSKHVIVNEGDF 2627 Query: 1204 VERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRK 1263 V +GD++ DG HDILR+ G+ A+ Y+++E+Q VYRLQGV+I++KH+EVI++QML+K Sbjct: 2628 VRKGDLLMDGDPDLHDILRVLGLEALAHYMISEIQQVYRLQGVRIDNKHLEVILKQMLQK 2687 Query: 1264 ATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAA 1323 I + G + +L GE ++ V N + +GK A Y L GIT+ASL T+SFISAA Sbjct: 2688 VEITDPGDTMYLVGESIDKLEVDKGNDVMSNSGKRPACYLPILQGITRASLETKSFISAA 2747 Query: 1324 SFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362 SFQETT+VLTEAA GK D L GLKENVIVGRLIPAGTG Sbjct: 2748 SFQETTKVLTEAAFCGKEDPLSGLKENVIVGRLIPAGTG 2786 >UniRef50_C1A6N8 DNA-directed RNA polymerase n=2 Tax=Bacteria RepID=C1A6N8_GEMAT Length = 1436 Score = 1429 bits (3700), Expect = 0.0, Method: Compositional matrix adjust. Identities = 747/1422 (52%), Positives = 981/1422 (68%), Gaps = 99/1422 (6%) Query: 11 QTKTEEFDAIKIALASPDMIRS------------------WSFGEVKKPETINYRTFKPE 52 + + FD + + +AS + IR WS+GEV KPETINYR+FKPE Sbjct: 9 EARASAFDYMSVRIASAEEIRGPKDPKERERLEMAGLRTWWSWGEVTKPETINYRSFKPE 68 Query: 53 RDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTA 112 +DGLFC RIFGPVKD+EC CGKYKR+++RGVIC++CGVEVT +KVRRERMGHIELA P A Sbjct: 69 KDGLFCERIFGPVKDWECHCGKYKRIRYRGVICDRCGVEVTLSKVRRERMGHIELAVPVA 128 Query: 113 HIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYL----DA 168 HIWF K+LPS +G LLD+ LRD+E+V+Y+ +Y+VIE G + +Q+L E++YL A Sbjct: 129 HIWFFKTLPSPMGNLLDVTLRDLEKVIYYSNYIVIEPGNQEVRERQLLDEDEYLTLRQKA 188 Query: 169 LEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFV 228 E F +GA A++ LLK +D+++ E LR + S+ ++K++ KR+K+++AF Sbjct: 189 KAEGDAAFQCDIGAPAVRELLKRLDIDKVAETLRGSVVGETSQHRKKQMLKRLKIVDAFR 248 Query: 229 QSG------NKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL 282 SG N+PEWMIL V+PV+PPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRL++L Sbjct: 249 TSGEGGEIRNRPEWMILDVIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLQKL 308 Query: 283 LDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNL 342 + AP++I+RNEKRMLQEAVDAL DNGRR +AI G KRPLKSL+DM+KGKQGRFRQNL Sbjct: 309 ISHRAPEVILRNEKRMLQEAVDALFDNGRRSKAIRGRGKRPLKSLSDMLKGKQGRFRQNL 368 Query: 343 LGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVE 402 LGKRVDYSGRSVI VGP L+LHQCGLPK MALELFKPFI KL G A T+K AKK+VE Sbjct: 369 LGKRVDYSGRSVIVVGPELKLHQCGLPKMMALELFKPFIIHKLVESGEAETVKRAKKIVE 428 Query: 403 REEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFD 462 RE A+V+++L+ +I++HPVLLNRAPTLHRLGIQAFEPVL+EGKAI++HPLVCAA+NADFD Sbjct: 429 RENAMVYEVLEGIIKDHPVLLNRAPTLHRLGIQAFEPVLVEGKAIRIHPLVCAAFNADFD 488 Query: 463 GDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVN--- 519 GDQMAVHVPL+ EAQ+E+R LM+S+NNIL P++G P+ PSQD+VLG Y T+ + Sbjct: 489 GDQMAVHVPLSFEAQIESRVLMLSSNNILKPSDGRPVAEPSQDIVLGCYVATKAPTDFDK 548 Query: 520 -AKGEGMV-----LTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTT 573 AK E V T E E +G A+ + ++ E + TT Sbjct: 549 HAKDEAWVRKLPTFTDTAEVEIAIANGRATYQSPIRWLDRREE---------TPTWVTTT 599 Query: 574 VGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAA 633 GR + +IVPKGLP+ +N+ + KKA+ +++ YR GL TV D++ GF A Sbjct: 600 TGRVLFDVIVPKGLPF--LNKDMKKKALGELVFESYRNAGLAETVALLDRLKEFGFRNAT 657 Query: 634 RSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRV 693 R G S+GI+D+ IP++K ++ EA V Q + +G +T GERYNKVID W AN V Sbjct: 658 RGGVSIGIEDLHIPKEKQTLLQEASERVERFQRAYATGNITNGERYNKVIDTWTHANTDV 717 Query: 694 SKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPD-- 751 + AM+ ++ E Q FN ++MM DSG+RGS QIRQLAGMRGLMAKP Sbjct: 718 ADAMVKTMR-----------ESQGGFNPVFMMYDSGSRGSRDQIRQLAGMRGLMAKPQKK 766 Query: 752 -----GSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQD 806 G IIE PI +NFREGL+VL+YF STHGARKGLADTALKTA++GYLTRRLVDVAQD Sbjct: 767 LTGGIGEIIENPIKSNFREGLSVLEYFSSTHGARKGLADTALKTADAGYLTRRLVDVAQD 826 Query: 807 LVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKP------GTADILVPR 860 + + E+DCGT GI + + EG DV EPL +R++G V AEDV+ P G +LV Sbjct: 827 MTIAEEDCGTILGIDTSALKEGEDVIEPLAERLVGNVAAEDVIDPLERDEAGRPRLLVEA 886 Query: 861 NTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAA 920 TL+ E+ +EE ++ VK+RSV++C+ G+C CYGR+LA +++ GEA+G+IAA Sbjct: 887 GTLISEEMAQSIEEAGIETVKIRSVLTCEAKRGLCRMCYGRNLATMQMVDLGEAVGIIAA 946 Query: 921 QSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSN-VKSVVNSSGKLVITSRN 979 QSIGEPGTQLT+RTFH+GG ASR A +++ + K G I+ + + +V+N G+ V+TS Sbjct: 947 QSIGEPGTQLTLRTFHVGGTASRIAEQTARKTKKAGVIEFGDRLFTVINKEGQKVVTSYE 1006 Query: 980 TELKL---IDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVR 1036 EL + D+ + +VP GA L DG+ V +TV WDP++ P+I +V G VR Sbjct: 1007 GELVIKTSADKNASIEARLQVPLGAYLMVEDGQVVKKDDTVFTWDPYSNPIIADVDGTVR 1066 Query: 1037 FTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMP 1096 F D+++ ++++ + DELTGL VV++ E K L P ++I G G + Sbjct: 1067 FVDLVEDESLSEELDELTGLRQRVVIEDRE-----KKLHPHIEIWQESG------GKEKR 1115 Query: 1097 AQYF-LPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAI 1155 + F LP A++ ++DG I++G LA++ +E+ T+DITGGLPRVA+LFEARRPK+PA Sbjct: 1116 VRDFILPVGAVITIDDGGHIAAGTILAKVSREAYKTRDITGGLPRVAELFEARRPKDPAT 1175 Query: 1156 LAEISGIVSFGKETKGKRRLVITP--VD-----GSDPYEEM---IPKWRQLNVFEGERVE 1205 ++EI G V FG+ +GKR + + P VD D EE +P + L V EG+RV Sbjct: 1176 ISEIDGFVRFGEIKRGKREVFVRPATVDKGLWTADDTAEEQTYEVPSGKHLRVHEGDRVR 1235 Query: 1206 RGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKAT 1265 GD IS+GP PHDILR++G AV Y++NEVQ+VYRLQGVKINDKHI VIV+QML+K Sbjct: 1236 AGDRISEGPVNPHDILRIKGPRAVQEYLLNEVQEVYRLQGVKINDKHIGVIVKQMLQKVR 1295 Query: 1266 IVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASF 1325 + ++G ++ LEGE V+ S + N + + AT LLGITKASL T+SF+SAASF Sbjct: 1296 VADSGDTELLEGEHVDRSEFRDVNDDAKKRKIRPATAEPLLLGITKASLTTQSFVSAASF 1355 Query: 1326 QETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG-YAYH 1366 QETTRVLT+AA+ G RD+L GLKEN+I+G LIPAGTG Y YH Sbjct: 1356 QETTRVLTDAAIRGSRDDLLGLKENIIIGHLIPAGTGLYRYH 1397 >UniRef50_B2UQY1 DNA-directed RNA polymerase subunit beta' n=5 Tax=Verrucomicrobia RepID=RPOC_AKKM8 Length = 1398 Score = 1429 bits (3700), Expect = 0.0, Method: Compositional matrix adjust. Identities = 713/1369 (52%), Positives = 961/1369 (70%), Gaps = 42/1369 (3%) Query: 13 KTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLC 72 K FD + I +A PD IRSWSFGEV PETINYRTFKPE+ GLFC RIFGP +D EC C Sbjct: 16 KPRTFDQVAITVADPDTIRSWSFGEVVNPETINYRTFKPEKGGLFCERIFGPTRDMECAC 75 Query: 73 GKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPL 132 GKYKR+KH+G+ C++CGVEVT +VRRERMGHIELA P +HIWF K +PSRIGL+LDM Sbjct: 76 GKYKRIKHKGITCDRCGVEVTNARVRRERMGHIELAVPVSHIWFYKCMPSRIGLMLDMTA 135 Query: 133 RDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFG-DEFDAKMGAEAIQALLKS 191 R +ERV+Y+E Y+V++ G T LE+ ILTEE++ +A +E+G D F+A MGAEAIQ +L + Sbjct: 136 RHLERVIYYEDYIVVDPGSTPLEKGAILTEEEFRNAEDEYGYDSFEAGMGAEAIQKMLAA 195 Query: 192 MDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRP 251 +DL L+E+L+ TNS+ ++K+ KR+KL + F+QS +PEWMIL VLPV+PPDLRP Sbjct: 196 IDLPTLVADLQEQLDNTNSKQNKRKIAKRLKLAQGFLQSNTRPEWMILNVLPVIPPDLRP 255 Query: 252 LVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGR 311 LVPL+GGRFATSDLNDLYRRVINRNNRLK LL L P++I+RNEKRMLQEAVDAL DNGR Sbjct: 256 LVPLEGGRFATSDLNDLYRRVINRNNRLKTLLSLKTPEVIIRNEKRMLQEAVDALFDNGR 315 Query: 312 RGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKK 371 GRA+TG+ RPLKSL+DM+KGK GRFRQNLLGKRVDYSGRSVI +GP L+L+QCGLPKK Sbjct: 316 HGRAVTGAGNRPLKSLSDMLKGKGGRFRQNLLGKRVDYSGRSVIVIGPELKLNQCGLPKK 375 Query: 372 MALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHR 431 MAL LF+PFI +L+ G T+++AKK+++R+ VWDIL+EV + HPV+LNRAPTLHR Sbjct: 376 MALILFEPFIIHRLKELGYVHTVRSAKKLIDRKTPEVWDILEEVTKGHPVMLNRAPTLHR 435 Query: 432 LGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNIL 491 L IQAFEPVLIEG AI+LHPLVC AYNADFDGDQMAVHVPL++EAQ+EAR LM++ NNI Sbjct: 436 LSIQAFEPVLIEGSAIRLHPLVCNAYNADFDGDQMAVHVPLSVEAQMEARQLMLAPNNIF 495 Query: 492 SPANGEPIIVPSQDVVLGLYYMT-------RDCVNAKGEGMVLTGPKEAERLYRSGLASL 544 SPA+G+PI P+QD++LG Y++T ++ + + E E + Sbjct: 496 SPASGKPIATPTQDIILGAYFLTHTRAAEVQNNQDNHHHLPLFESIDEVEYAIAARKIGY 555 Query: 545 HARVKVRITEYEKDAN----GELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKA 600 H +++ +Y K + G++ K + TT GR I P+ L Y +N+ +GKK Sbjct: 556 HDWIRLHNPDYGKKPSEVVYGDVTKKVII--TTAGRVRFNEIWPRELGY--INRNVGKKQ 611 Query: 601 ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAE 660 + ++ CY+ +G + TV D + GF A RSG S+GI DMV+P +K I +A AE Sbjct: 612 MGDIIWRCYQTVGKERTVQTLDALKNLGFKEATRSGCSIGIVDMVVPSQKKTEIEKAYAE 671 Query: 661 VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFN 720 + ++ Q+++G++T GERY KV+DIW D + A+ L+ E + Sbjct: 672 LDKVTRQYKNGIITDGERYQKVVDIWTQTTDVIQAALYRKLE---------HNEGSKMAS 722 Query: 721 SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR 780 ++MM DSGARG+ AQI+QL+GMRGLMAKP G IIE PITANFREGL+VL+YFISTHGAR Sbjct: 723 PLFMMVDSGARGNKAQIKQLSGMRGLMAKPSGEIIERPITANFREGLSVLEYFISTHGAR 782 Query: 781 KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVL 840 KGLADTALKTA+SGY+TR+LVDVAQD++V +DCGT GI + + +G + L R+ Sbjct: 783 KGLADTALKTADSGYMTRKLVDVAQDVIVHAEDCGTSNGITVHAIYDGDEEVASLSSRIY 842 Query: 841 GRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYG 900 GR + E ++ P + +++V N L++E+ + LE+ ++ +K+RSV++C+ G CA CYG Sbjct: 843 GRTSCERIVDPVSGEVIVDINDLINEKQAEQLEKIGIERLKIRSVLTCELKKGCCAKCYG 902 Query: 901 RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGS-IK 959 +LA G + GEA+G+IAAQSIGEPGTQLTMRTFH+GG A+ A + ++ KN G I Sbjct: 903 LNLATGQEVKIGEAVGIIAAQSIGEPGTQLTMRTFHVGGTATTAFKQPIVKAKNDGRVIY 962 Query: 960 LSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVAN 1019 ++++V N+ G V+ ++N +++ +E GR ESY+ G +L +G + ET+A Sbjct: 963 TEDLRTVENADGNFVVLNKNCSVRIENEQGRELESYQPVIGTILYVPNGGTIKKDETLAT 1022 Query: 1020 WDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALK 1079 WDP+ +PVI E G V F DMI G T++++TD TG SSLVV++ + +L P + Sbjct: 1023 WDPYNVPVIAEKGGIVEFKDMIVGITVSKETDRETGASSLVVMEHKQ------ELHPQVV 1076 Query: 1080 IVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLP 1139 I DA+ +VL A + +P A + ++DG IS+G +A+ P++ TKDITGGLP Sbjct: 1077 IRDAKTREVL-------AHHAIPAGANLTVKDGETISAGTMVAKTPRKVAKTKDITGGLP 1129 Query: 1140 RVADLFEARRPKEPAILAEISGIVSFGKE--TKGKRRLVITPVDGSDPYEEMIPKWRQLN 1197 RVA+LFEAR+PK+ +A + GIV + ++GK+ + I G + + ++P + + Sbjct: 1130 RVAELFEARKPKDACTIARVEGIVRLSSKNTSRGKKVITIETPTG-ELVDHLVPMNKHVI 1188 Query: 1198 VFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIV 1257 V E + V GD +++GP +P +IL + G + ++VNEVQ+VYRLQGV+INDKH+E+IV Sbjct: 1189 VHEDDHVHLGDQLTEGPVSPEEILDVCGKERLQEHLVNEVQEVYRLQGVEINDKHVEIIV 1248 Query: 1258 RQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATE 1317 RQMLRK I G+++FL G+QV+ + N + A G A LLGITKASL TE Sbjct: 1249 RQMLRKVVITEPGNTEFLWGDQVDKTTFDRINEQTVAQGGQPAAAKPVLLGITKASLETE 1308 Query: 1318 SFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYH 1366 SFISAASFQ+TTRVLTEA+ GK D L G KENVI+G LIPAGTG++ + Sbjct: 1309 SFISAASFQDTTRVLTEASTLGKTDTLEGFKENVIMGHLIPAGTGFSRY 1357 >UniRef50_Q7URW4 DNA-directed RNA polymerase subunit beta' n=8 Tax=Bacteria RepID=RPOC_RHOBA Length = 1429 Score = 1417 bits (3668), Expect = 0.0, Method: Compositional matrix adjust. Identities = 708/1425 (49%), Positives = 981/1425 (68%), Gaps = 75/1425 (5%) Query: 13 KTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLC 72 + ++ +++I+LA P I++WSFGEVKKPETINYRT++PE+DGLFC RIFGP KD+EC C Sbjct: 11 RINDYASVRISLARPQDIKAWSFGEVKKPETINYRTYRPEKDGLFCERIFGPEKDWECAC 70 Query: 73 GKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPL 132 GKY+ +K++G+IC++CGV+VT ++VRR+RMGHIELA+P HIWF K++PSR+G LL M Sbjct: 71 GKYRGMKYKGMICDRCGVKVTHSRVRRKRMGHIELAAPVVHIWFFKAMPSRLGNLLAMKT 130 Query: 133 RDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGD-EFDAKMGAEAIQALLKS 191 +E+V+YF+ YVV + T+LE Q+LTEE+Y A +++G F A MGAEA++ LL Sbjct: 131 SSLEKVIYFQDYVVTDPKDTDLEMLQLLTEEEYRAARQQYGSGSFQADMGAEAVRDLLNK 190 Query: 192 MDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRP 251 +DL +QLR +L ET S+ K+K L R+K++E+ S N+PEWM+L V+PV+PPDLRP Sbjct: 191 LDLVTLSDQLRVDLAETGSKQKKKDLINRLKIVESIRDSDNRPEWMVLDVIPVIPPDLRP 250 Query: 252 LVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGR 311 LV LD G FATSDLNDLYRR+INRNNRL++L+DL AP++I+RNEKRMLQ++VDAL DN R Sbjct: 251 LVLLDSGNFATSDLNDLYRRIINRNNRLRKLVDLNAPEVIIRNEKRMLQQSVDALFDNNR 310 Query: 312 RGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKK 371 R + GS+ RPLKSL DMIKGKQGRFR+NLLGKRVDYS RSVI VGP L+LHQCGLPKK Sbjct: 311 CKRPVLGSSNRPLKSLTDMIKGKQGRFRENLLGKRVDYSARSVIVVGPRLKLHQCGLPKK 370 Query: 372 MALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHR 431 +ALEL++PFI +L+ G A TIK+AKKM+ER++ VWDIL++VI HPVLLNRAPTLHR Sbjct: 371 IALELYQPFIIRRLKELGHADTIKSAKKMLERKDEEVWDILEQVITNHPVLLNRAPTLHR 430 Query: 432 LGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNIL 491 +GIQAFEP L+EG AI LHPLVC +NADFDGDQMAVH+PL++EAQ+EA LMMSTNN+ Sbjct: 431 MGIQAFEPTLVEGNAIHLHPLVCKGFNADFDGDQMAVHLPLSIEAQVEAHTLMMSTNNVF 490 Query: 492 SPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVR 551 +P+NG+PI+ PSQD+V+G Y+MT + + KGEGM + +E + G+ LH R+K+R Sbjct: 491 APSNGKPIMSPSQDIVMGCYFMTVEMPDQKGEGMTFSTYEEVDYALAQGIVGLHTRIKLR 550 Query: 552 ITEYEK----DANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNT 607 + +Y+K D +GE A + DTT GR ++P G+ + N+A+ ++K ++ Sbjct: 551 LPKYQKLKTDDESGEYGA---IIDTTPGRVRFNEMLPVGMDF--YNRAMRSGDLAKSISD 605 Query: 608 CYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQ 667 CY+ LG K T+ D +M TGF + RSG S DD+V P+ K + I EAE EV + ++ Sbjct: 606 CYQRLGRKATIHLLDDMMQTGFRESTRSGLSFATDDLVTPDTKLQFIKEAEKEVMKHKKA 665 Query: 668 FQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMAD 727 + GL+T ERYN+V+D W A + ++ MM ++ + R G N +++M+ Sbjct: 666 YDRGLMTGKERYNQVLDAWTHAREAITADMMSAMENDI---RPGG----WYINPVFLMSH 718 Query: 728 SGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTA 787 SGARG QIRQLAGMRGLMAKP G IIETPI ANFREGL+VL+YF STHGARKGLADTA Sbjct: 719 SGARGGIEQIRQLAGMRGLMAKPTGEIIETPIKANFREGLSVLEYFSSTHGARKGLADTA 778 Query: 788 LKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAED 847 LKTA+SGYLTR+L DVAQ++VVT DCGT +GI V G V+ L + + GRV+ + Sbjct: 779 LKTADSGYLTRKLADVAQNVVVTMHDCGTTQGITKGVVYRGEKVEVSLAESINGRVSLKS 838 Query: 848 VLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGH 907 ++ P T +++V N ++ + +E ++ ++VR+ +SCD GVC CYG D++ G Sbjct: 839 IVNPVTDEVIVEANQMITPEIARNIEAMGLEKIQVRTPMSCDAPLGVCRCCYGMDMSTGS 898 Query: 908 IINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVV 967 ++ +G A+G+IAAQSIGEPGTQLTMRTFHIGG+ S+ ES I+ G ++L+ +K+V Sbjct: 899 MVEEGMAVGIIAAQSIGEPGTQLTMRTFHIGGSVSKQVEESDIKTSRDGEVRLTRMKAVT 958 Query: 968 NSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPV 1027 N+ G+ ++ +RN ++ L+D+ GR ESY +P GA+L +G++V G+ + W+P+++P+ Sbjct: 959 NAEGRDIVLTRNGQIMLVDDRGREVESYDIPTGAMLMVKEGDKVTAGQVLCEWNPYSIPI 1018 Query: 1028 ITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGND 1087 ++EV+G +RF D+++G+T+ R E +G + + ++D DL P L I D G Sbjct: 1019 LSEVTGKIRFEDVVEGETM-RLDREASGNTRMTIIDHK------GDLHPQLVIEDETGRP 1071 Query: 1088 VLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEA 1147 + AQY LP +A + +++G ++ G LA +P+E+GG DITGGLPRV ++FEA Sbjct: 1072 -------LHAQY-LPERATISVKEGEEVIPGKVLAEMPRETGGVSDITGGLPRVTEIFEA 1123 Query: 1148 RRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERG 1207 R+PK+PA++AE+ G V E K +R +I + E ++P + V G+ V+ G Sbjct: 1124 RKPKDPAVIAEVDGEVEILSERKRGKRTIIVRSESGIEREHLVPHGKHFLVHTGDIVKAG 1183 Query: 1208 DVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIV 1267 + DG PHDILR+ G AV +Y+++E+Q VYR Q V+INDKH E+I+ +MLRK I Sbjct: 1184 QALVDGALVPHDILRVTGEEAVQQYLLHEIQQVYRSQRVEINDKHGEIIIARMLRKVKIE 1243 Query: 1268 NAGSSDFLEGEQVEYSRVKIANRELE---------------------------------- 1293 NAG ++ L G ++ + AN++L+ Sbjct: 1244 NAGDTNLLPGSVMDRFHFRKANQDLQKCIKIANPGDTDYTEGTIVPKEAFEQTNAEVEAM 1303 Query: 1294 ----ANGK--VGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGL 1347 A GK AT S LLGITKA++ + SFISAASFQETT+VLTEAA+AGK D+L GL Sbjct: 1304 GGTPAKGKRCKSATASTQLLGITKAAVQSNSFISAASFQETTKVLTEAALAGKVDKLVGL 1363 Query: 1348 KENVIVGRLIPAGTGYAYHQD---RMRRRAAGEAPAAPQVTAEDA 1389 KENVI+G LIPAGTG+ Q+ RR A E AP E++ Sbjct: 1364 KENVILGHLIPAGTGFRIFQESEVNYRREALEELSQAPVSALEES 1408 >UniRef50_B2KEN0 DNA-directed RNA polymerase subunit beta' n=1 Tax=Elusimicrobium minutum Pei191 RepID=RPOC_ELUMP Length = 1385 Score = 1410 bits (3651), Expect = 0.0, Method: Compositional matrix adjust. Identities = 730/1377 (53%), Positives = 969/1377 (70%), Gaps = 51/1377 (3%) Query: 16 EFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKY 75 +FDAIK+ +ASP+ I +WS GEVKKPETINYRT KPERDGLFC RIFGP KDYEC CGKY Sbjct: 18 DFDAIKLGIASPEQIMAWSHGEVKKPETINYRTLKPERDGLFCERIFGPTKDYECSCGKY 77 Query: 76 KRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDI 135 + +K++G+ C++CGVE+T+ KVRRERMGH+ELA P AH+WFL+ PSRIG++LDM + D+ Sbjct: 78 RWVKYKGMQCDRCGVEITEAKVRRERMGHLELAVPVAHVWFLRKNPSRIGIMLDMRITDL 137 Query: 136 ERVLYFESYVVIEG------GMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALL 189 ERV+Y+ SYVV+E G T+ ++ ++LT+ Q +A ++ G +GA A++ LL Sbjct: 138 ERVVYYASYVVVEDCIDSVTGRTDYKKGELLTDVQVREARKKHGSRLKVDIGAPAVKKLL 197 Query: 190 KSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDL 249 +D ++E L +L ET SE +R KL +RIK +E F SGN+PEWMIL+VLPV+PPDL Sbjct: 198 SDIDFDKEIPTLHVQLAETQSELERTKLIRRIKTMEEFKASGNRPEWMILSVLPVIPPDL 257 Query: 250 RPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDN 309 RPLVPLDGGRFA SDLNDLYRR+INRNNRLK + L AP++++ NEKR+LQEAVDAL++N Sbjct: 258 RPLVPLDGGRFAASDLNDLYRRIINRNNRLKHIESLRAPEVMIYNEKRLLQEAVDALIEN 317 Query: 310 GRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLP 369 G RG+ G+ RPLKSL+D+IKGK GRFRQNLLGKRVDYSGRSVI VGP L+LHQCGLP Sbjct: 318 GARGKFFIGAGGRPLKSLSDVIKGKHGRFRQNLLGKRVDYSGRSVIVVGPSLKLHQCGLP 377 Query: 370 KKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTL 429 K MALELFKPFI G+L ++ T+KAAKKM+ER +WDIL++V + HPV+LNRAPTL Sbjct: 378 KLMALELFKPFIIGEL-MKKEGVTLKAAKKMLERVRPEIWDILEQVTKNHPVMLNRAPTL 436 Query: 430 HRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNN 489 HRLGIQAFEPVLIEGKAIQLHPL CAA+NADFDGDQMAVHVPL+LEAQLEAR LM++TNN Sbjct: 437 HRLGIQAFEPVLIEGKAIQLHPLTCAAFNADFDGDQMAVHVPLSLEAQLEARTLMLATNN 496 Query: 490 ILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVK 549 ILSPA+G PI PS D+V+G+ ++T+ +N GEG V +EA Y G SLHAR+K Sbjct: 497 ILSPASGRPIAAPSHDIVMGISFLTKVKLNDFGEGAVFGSMEEALMAYAYGKVSLHARIK 556 Query: 550 VR-ITEYEKDANGE--LVAKTSLKD-TTVGRAILWMIVPKGLPYSIVNQALGKKAISKML 605 VR IT ++D E L + KD TTVG+ I +P+G PY VN A+GKK ++ ++ Sbjct: 557 VRGITAIKEDGMNEKDLKNVNTWKDYTTVGKIIFNNNLPEGWPY--VNGAVGKKELAAII 614 Query: 606 NTCYRI--LGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAE 663 + CY+ G TV D+IM G+ YA RSG S+ I DM++P K + I A+ + E Sbjct: 615 DECYKSKKYGKYETVQLLDRIMKLGYNYATRSGLSISIADMIVPAAKQKYIDAAKKRIKE 674 Query: 664 IQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQT--ETVINRDGQEEKQVSFNS 721 IQ Q ++G++T GERYNKVIDIW D V+ ++ E + +GQ FNS Sbjct: 675 IQGQAEAGIITEGERYNKVIDIWTRVTDDVAVEQFKEMKKFEEAPYSGEGQR-----FNS 729 Query: 722 IYMMADSGARGSAAQIRQLAGMRGLMAKP-------DGSIIETPITANFREGLNVLQYFI 774 +++MADSGARGS Q+RQLAGMRGLMAKP G IIE+PIT+NFREGL+VL+YFI Sbjct: 730 VFLMADSGARGSRQQVRQLAGMRGLMAKPQKKLTGGQGEIIESPITSNFREGLSVLEYFI 789 Query: 775 STHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEP 834 STHG RKGL+DTALKTA +GYLTRRL+DVA +LVV E+DCGT G++++ ++ G +V EP Sbjct: 790 STHGGRKGLSDTALKTAEAGYLTRRLIDVAHNLVVMEEDCGTTNGVVVSSLMSGEEVVEP 849 Query: 835 LRDRVLGRVTAEDVL-KPGTADILVPRNTLLHE------QWCDLLEENSVDAVKVRSVVS 887 + +R+LGR + EDV+ K AD T++ E + L+++ V +++RSV++ Sbjct: 850 IEERILGRTSLEDVIVKIKKADGKEEEKTIIKEGDSITLEQSKLVKKYGVQNLRIRSVLT 909 Query: 888 CDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAE 947 C++ GVC CYG L G+I N G+++G+IAAQSIGEPGTQLT+RTFHIGGAASR ++ Sbjct: 910 CESKNGVCGKCYGVSLVSGNISNVGDSVGIIAAQSIGEPGTQLTLRTFHIGGAASRMLSQ 969 Query: 948 SSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGD 1007 S + G + ++K + N + SRN + + G KE YK+ YGA L D Sbjct: 970 SQAVAELGGKVTFKDIKVITNRFDNKICISRNGAIFVEAANGTIKE-YKIQYGATLHIAD 1028 Query: 1008 GEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAER 1067 V G +A WDPH++PV++E G R TD+ +G T+ + +++TG+ + +A R Sbjct: 1029 KVTVEKGTLMAEWDPHSIPVLSETEGTARLTDVSEGITLQEERNKVTGVIERKI--TASR 1086 Query: 1068 TAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQE 1127 G K+ P + I G V +P LP I+ +E+G + +GD LA+I + Sbjct: 1087 M-GKKN--PRIVIEGKGGKKVSLP---------LPVDTILLVENGEDVLAGDILAKIAKA 1134 Query: 1128 SGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYE 1187 SGGTKDIT GLPR+A+LFEAR+P+ AI++E +G+VS KG +V+ + + Sbjct: 1135 SGGTKDITSGLPRIAELFEARKPRNAAIMSEFAGVVSLETSPKGLVEIVVRSEETGQVKQ 1194 Query: 1188 EMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVK 1247 +P+ + L V+EG+ V G+ ++DG PHD+LR++G+ V +++N +Q+VYRLQGV Sbjct: 1195 YAVPQGKHLVVYEGDHVGVGEALTDGAIDPHDVLRVKGIKEVQEFLLNAIQEVYRLQGVT 1254 Query: 1248 INDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLL 1307 IND+HIEVIVRQML IV+AG + L+GE V + + N + E GK A LL Sbjct: 1255 INDRHIEVIVRQMLGNVKIVDAGDTPLLKGEIVSRATLLKHNAQAEKEGKKIAVGDPILL 1314 Query: 1308 GITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 GI+KASLA++SFISAASFQETT+VLT+AA+ G+ D L+GLKENVIVG LIPAGTG + Sbjct: 1315 GISKASLASDSFISAASFQETTKVLTDAAITGQVDTLQGLKENVIVGHLIPAGTGIS 1371 >UniRef50_Q2S1Q6 DNA-directed RNA polymerase subunit beta' n=62 Tax=root RepID=RPOC_SALRD Length = 1448 Score = 1380 bits (3572), Expect = 0.0, Method: Compositional matrix adjust. Identities = 699/1425 (49%), Positives = 972/1425 (68%), Gaps = 109/1425 (7%) Query: 16 EFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKY 75 +FD+I I+LASP+ I S+GEV KPETINYR+FKPE GLFC +IFGPVKDYEC CGKY Sbjct: 12 DFDSITISLASPEDILERSYGEVMKPETINYRSFKPEMGGLFCEKIFGPVKDYECHCGKY 71 Query: 76 KRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDI 135 KR++++G+IC++CGVEVT+ VRRERMGHI L+ P HIW+ K+LP++IG LL + +D+ Sbjct: 72 KRIRYKGIICDRCGVEVTRKAVRRERMGHISLSVPVVHIWYFKTLPNKIGHLLGLKSKDL 131 Query: 136 ERVLYFESYVVIEGGMTN---LERQQILTEEQYLDALEEFGDE-----------FDAKMG 181 E+V+Y+E+Y+VI+ G +E Q+LTEE+Y + L + D+ F AK+G Sbjct: 132 EKVIYYENYIVIQPGTAERLGVEENQLLTEEEYYEILYQIRDDNNRLQDDNEEKFIAKIG 191 Query: 182 AEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSG----NKPEWM 237 EA++ +L+ ++L++ ++LR ++ S+ ++ K KR+ ++EAF ++ NKPEWM Sbjct: 192 GEAVETMLERLELDKLAQELRYQVRTETSQQRKSKALKRLDVVEAFREANEDGTNKPEWM 251 Query: 238 ILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKR 297 ++ V+PV+PP+LRPLVPLDGGRFATSDLNDLYRRVI RNNRLKRL+D+ AP++I+RNEKR Sbjct: 252 VMRVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIDIKAPEVILRNEKR 311 Query: 298 MLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITV 357 MLQEAVD+L DN R+ ++ GS+ RPLKSL+DM+KGKQGRFRQNLLGKRVDYSGRSVI Sbjct: 312 MLQEAVDSLFDNSRKSNSVRGSSNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVS 371 Query: 358 GPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIR 417 GP+L LHQCGLPK+MA+ELFKPFI +L RG+ T+K+AKK V+++ VWDIL++VI+ Sbjct: 372 GPHLELHQCGLPKEMAVELFKPFIIRRLIERGIVKTVKSAKKYVDKKTEDVWDILEKVIQ 431 Query: 418 EHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQ 477 PVLLNRAPTLHRLGIQAF+PVL E KAI++HPLVC AYNADFDGDQMAVHVPL+ EA Sbjct: 432 GRPVLLNRAPTLHRLGIQAFQPVLTENKAIEIHPLVCPAYNADFDGDQMAVHVPLSHEAC 491 Query: 478 LEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLY 537 LE+ LM+S++N+ SPA+G P+ VPSQD++LGLYY+T+ N KGEGM +E + + Sbjct: 492 LESMVLMLSSHNVRSPADGGPLAVPSQDMILGLYYITKAKSNQKGEGMRFANVQEVRQAF 551 Query: 538 RSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALG 597 +LHA++++R + D +GE++ DTTVGR I +P L Y VN+ L Sbjct: 552 DQDQVALHAKIQLR----DPDGSGEMI------DTTVGRVIFNETLPDTLDY--VNEVLS 599 Query: 598 KKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEA 657 K + ++ + G + T F D I GF + SG + + D++IP++K E+I EA Sbjct: 600 TKNVRPVIARVLKQTGFEETADFLDAIKDMGFRRSTTSGMTFSLSDIIIPDEKEELIEEA 659 Query: 658 EAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQV 717 V E ++ + G +T ERYN+VID+W N++VS+ + D L+ E + Sbjct: 660 NETVEEAEQNYSMGFITDNERYNQVIDVWTKTNNKVSEVLFDALK-----------EHKE 708 Query: 718 SFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGS---------IIETPITANFREGLN 768 FN I+ MADSGARGS QIRQL GMRGLMAKP + I+E PI +NF+EGL Sbjct: 709 GFNPIFTMADSGARGSQEQIRQLGGMRGLMAKPQKNIGEGGGGGEILENPILSNFKEGLT 768 Query: 769 VLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEG 828 V +YFISTHG+RKGLADTALKTA++GYLTRRLVDV+Q + VTE DCGT GI + + + Sbjct: 769 VQEYFISTHGSRKGLADTALKTADAGYLTRRLVDVSQSVTVTEHDCGTLRGINVGALKDN 828 Query: 829 GDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSC 888 +V PL DR+ GRV+ DV P T +++V N L+ ++ D + + S++ +++RSV++C Sbjct: 829 EEVVAPLSDRITGRVSVRDVYDPHTDELIVEANELITDEIADDIAQTSIEEIEIRSVLTC 888 Query: 889 DTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAES 948 + + GVC CYG++LA G ++ GE++GV+AAQSIGEPGTQLT+RTFH GG A+R ES Sbjct: 889 EAERGVCTLCYGQNLATGRMVEVGESVGVVAAQSIGEPGTQLTLRTFHTGGTATREVGES 948 Query: 949 SIQVKNKGSIKLSNVKSVV--NSSG-KLVITSRNTELKLIDEFGRTKE--SYKVPYGAVL 1003 +IQ K G+++ N+++V ++ G K V+ SR E++++D G +E SY VPYGA L Sbjct: 949 TIQAKFAGTLEFENLRTVTYEDTDGPKEVVLSRQGEVRIMDTDGDRRELTSYVVPYGAEL 1008 Query: 1004 AKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLD 1063 +GE V G+ +A+WDP+ ++TE +G VRF D+I+ T +TDE TG V+++ Sbjct: 1009 LVDEGEDVEDGDVLASWDPYNSLILTEANGTVRFEDIIEDTTYREETDEQTGHKEKVIVE 1068 Query: 1064 SAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLAR 1123 S ERT L PA+ + G +Y +P A +Q+++G ++ +G TLA+ Sbjct: 1069 SRERT-----LTPAVIVETEDGEQ---------REYNMPVDARIQVDEGDEVQAGQTLAK 1114 Query: 1124 IPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGS 1183 +P+++ T DITGGLPRV +LFEAR P EPA+++EI GIVSFG + +G + +++T DG Sbjct: 1115 MPRQAAQTSDITGGLPRVEELFEARTPDEPAVVSEIDGIVSFGDQKRGSQEVIVTSRDGD 1174 Query: 1184 DPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRL 1243 M+ + + V EG+ VE GD + DG APHDIL ++G AV +++NEVQ+VYRL Sbjct: 1175 MEKSYMVSLSKHMLVHEGDYVEAGDRLCDGQIAPHDILSIKGPRAVQEHLLNEVQEVYRL 1234 Query: 1244 QGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANREL----------E 1293 QGV I+DKH EV++RQM+++ I G ++FLE +QV+ ++ N +L + Sbjct: 1235 QGVDIDDKHFEVVIRQMMKRVKITEPGDTNFLEEDQVDRQKMASINDDLYDKFVVKDPSD 1294 Query: 1294 ANGKVGATYSRD------------------------------LLGITKASLATESFISAA 1323 AN ++G R LLGITKASLAT+S ISAA Sbjct: 1295 ANVEIGEVIGRRRLRELNSELKREDKPEIEVREARPAVGEPLLLGITKASLATDSMISAA 1354 Query: 1324 SFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD 1368 SFQETT+VLT +A+ + D L GLKENV+ G IPAGTG ++D Sbjct: 1355 SFQETTKVLTNSAIRSRTDPLEGLKENVVAGHSIPAGTGQREYRD 1399 >UniRef50_C8PSU9 DNA-directed RNA polymerase n=2 Tax=Spirochaetaceae RepID=C8PSU9_9SPIO Length = 1444 Score = 1377 bits (3565), Expect = 0.0, Method: Compositional matrix adjust. Identities = 711/1398 (50%), Positives = 952/1398 (68%), Gaps = 89/1398 (6%) Query: 15 EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74 ++FD I I LASP+ IR+WS+GEVKKPETINYRT +PERDGLFC RIFG K++EC CGK Sbjct: 5 QDFDNIMIKLASPEAIRAWSYGEVKKPETINYRTLRPERDGLFCERIFGTTKEWECYCGK 64 Query: 75 YKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRD 134 +K ++++GVIC++CGVEVT KVRRERMGHIELA+P +HIW+ +S+PSR+GLLLD+P+ Sbjct: 65 FKSIRYKGVICDRCGVEVTHFKVRRERMGHIELAAPVSHIWYYRSVPSRMGLLLDLPVAA 124 Query: 135 IERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDL 194 + VLY+E Y+VIE G T+L++ Q+L E++Y DA E +G F A MGAEA++ LL +++L Sbjct: 125 LRSVLYYEKYIVIEPGGTDLKKNQLLNEDEYRDAQERYGGAFTANMGAEAVKTLLSNLNL 184 Query: 195 EQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVP 254 ++ QLR ++ E +++ K+L KRI+++E F S NKPEWMIL V+PV+PPDLRP+V Sbjct: 185 DELAAQLRMKMIEKGAKSD-KRLLKRIEIVEHFRTSNNKPEWMILDVIPVIPPDLRPMVQ 243 Query: 255 LDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGR 314 LDGGRFATSDLNDLYRRVI+RN+RL RL+ L APDII+RNEKRMLQEAVDAL DN +R R Sbjct: 244 LDGGRFATSDLNDLYRRVIHRNSRLTRLMSLKAPDIIIRNEKRMLQEAVDALFDNSKRKR 303 Query: 315 AITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMAL 374 I GS+ RPLKS++D++KGKQGRFRQNLLGKRVDYSGRSVI VGP L+L QCGLP KMAL Sbjct: 304 VIKGSSNRPLKSISDLLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLWQCGLPTKMAL 363 Query: 375 ELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGI 434 ELFKPFI KL + + + IK AK MVE+E A V+ +LDEVI EHPV+LNRAPTLHRLGI Sbjct: 364 ELFKPFIMKKLVQKEIVSNIKKAKLMVEQEAAPVFAVLDEVISEHPVMLNRAPTLHRLGI 423 Query: 435 QAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPA 494 QAFEPVL+EGKAI+LHPLVC +NADFDGDQMA+HVPLT AQ+E LM+S+ N+L PA Sbjct: 424 QAFEPVLVEGKAIKLHPLVCKPFNADFDGDQMAIHVPLTQAAQMECWTLMLSSRNLLDPA 483 Query: 495 NGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITE 554 NG+ I+ PSQD+VLGLYY+T+ G+ V +E + + S+ + ++I Sbjct: 484 NGKTIVYPSQDMVLGLYYLTKQRPLKDGQ-HVRRYSSVSEVMMAAEAGSIGWQELLKI-- 540 Query: 555 YEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGL 614 + GE V +TT GR +P+G+P+ VN AL K I K++ T YR G Sbjct: 541 ---NYRGEEV------ETTPGRLAFNEEMPEGVPF--VNIALDDKQIRKLIETVYRTKGT 589 Query: 615 KPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVT 674 TV D++ G+ YA GA++ +DD++IP++K +++ +A EV I Q++ G +T Sbjct: 590 WVTVQMLDKLKSVGYYYATFFGATLSMDDIIIPKEKSDMLEKANNEVLSIYNQYRGGHIT 649 Query: 675 AGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSA 734 ERYN+V+++W+ N+ ++ MMD L ++DG FN+IYMMA SGARGS Sbjct: 650 QEERYNRVVEVWSKTNEELTTIMMDTLAK----DQDG-------FNTIYMMATSGARGSR 698 Query: 735 AQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSG 794 QIRQLAGMRGLMAKP G IIE PI +NF+EGLNV+++FIST+GARKGLADTALKTA++G Sbjct: 699 NQIRQLAGMRGLMAKPSGDIIELPIRSNFKEGLNVIEFFISTNGARKGLADTALKTADAG 758 Query: 795 YLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTA 854 YLTRRLVD+AQD+VV E+DCGT GI + V G +V E L +R++G+ T E V P + Sbjct: 759 YLTRRLVDIAQDVVVNEEDCGTINGIEYSAVKSGDEVIESLSERIVGKYTLERVEHPISH 818 Query: 855 DILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEA 914 ++L+ N + ++ +EE V VK+R+V++C++ GVC CYGR+LAR I+ GEA Sbjct: 819 ELLIDVNEYITDEIAAKIEEAGVQTVKLRTVLTCESKHGVCVKCYGRNLARNKIVEIGEA 878 Query: 915 IGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLV 974 +G+IAAQSIG+PGTQLTMRTFH+GG AS E+ I K IK S+ G L+ Sbjct: 879 VGIIAAQSIGQPGTQLTMRTFHVGGTASSTTEENHITFKYPVIIKDILGTSIKLDDGNLL 938 Query: 975 ITSRNTEL--KLIDEF------------------------------------------GR 990 T R T L K++ E+ G Sbjct: 939 FTRRGTLLFEKVLKEYTLAAGDSVVVETGVRILRDDVLYTAADGTVVKSPLNAFAYLNGS 998 Query: 991 T------KESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQ 1044 T ++ ++ G+ + G+ V +A +DP+ P++ E GFVRF D+I G Sbjct: 999 TLYLTAPEQKTEIRNGSTVVIKKGDYVPATSIIATFDPYNEPILAEQDGFVRFEDIIPGS 1058 Query: 1045 TITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGK 1104 T+ + ++ TG VV L+P + I D GN + Y+LP Sbjct: 1059 TLEEEVNDETG----VVERHISELKSDMTLQPRVFISDESGNAL--------GFYYLPDG 1106 Query: 1105 AIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVS 1164 A + +E+ QI +G +A++P+ + T+DITGGLPRV++LFEARRPK PA+LA+++G VS Sbjct: 1107 AQLMVEEDTQIKAGTVIAKLPKAAARTQDITGGLPRVSELFEARRPKAPAVLAQVAGTVS 1166 Query: 1165 FGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLR 1224 F KGKR +++ G D Y+ ++P ++L V +G+ VE G+ + DG PHDIL + Sbjct: 1167 FKGLLKGKRIVIVKDHYGKD-YKHLVPMSKRLLVRDGDTVEAGERLCDGNLDPHDILAIL 1225 Query: 1225 GVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSR 1284 G +A+ Y++NE++DVYR+QGV INDKHI VIVRQMLRK +V+ G + F+ G+QV+ Sbjct: 1226 GENALQNYLMNEIRDVYRMQGVSINDKHIGVIVRQMLRKIEVVSVGDTRFIYGQQVDKYH 1285 Query: 1285 VKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDEL 1344 N+ + A G A GITKA+L +SFISAASFQETT+VLT AA+AGK DEL Sbjct: 1286 FHAENKRVTAEGGQPAIARPMFQGITKAALNIDSFISAASFQETTKVLTNAAIAGKVDEL 1345 Query: 1345 RGLKENVIVGRLIPAGTG 1362 RGLKENV++G LIPAGTG Sbjct: 1346 RGLKENVVIGHLIPAGTG 1363 >UniRef50_UPI00016C3582 DNA-directed RNA polymerase beta chain n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3582 Length = 1463 Score = 1372 bits (3551), Expect = 0.0, Method: Compositional matrix adjust. Identities = 727/1466 (49%), Positives = 957/1466 (65%), Gaps = 117/1466 (7%) Query: 13 KTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLC 72 + +F A++I+LASP I SWS GEVKKPETINYRT++PE+DGLFC +IFGP KD+EC C Sbjct: 22 RINDFGAVRISLASPQDIHSWSHGEVKKPETINYRTYRPEKDGLFCEKIFGPEKDWECSC 81 Query: 73 GKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPL 132 GKY+ +K++G+IC++CGV+V ++VRR+RMGHIELA+ HIWF K++PSR+G LLDM Sbjct: 82 GKYRGMKYKGMICDRCGVKVAHSRVRRKRMGHIELAAQVVHIWFFKAMPSRLGTLLDMKT 141 Query: 133 RDIERVLYFESYVVIEGG---MTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALL 189 +E+++YF+ YVVI G +T L+ +++L EE+Y + E GD F+ MGAEAI+ LL Sbjct: 142 TALEKIIYFQDYVVINPGDPEVTKLKERELLDEEKYKEKRAELGDAFEVDMGAEAIRKLL 201 Query: 190 KSMDLEQECEQLREELN------ETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLP 243 ++++L ++LRE LN E S+ + K+L KR+K +EA S NK EWM+L +P Sbjct: 202 ENLNLVDLSKELRERLNKEVARGEKKSKQREKELVKRLKTVEALRDSSNKCEWMVLECIP 261 Query: 244 VLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAV 303 V+PPDLRPLV LD G FATSDLNDLYRR+INRNNRLK+L+DL AP++I+RNEKRMLQ++V Sbjct: 262 VIPPDLRPLVLLDSGNFATSDLNDLYRRIINRNNRLKKLVDLNAPEVIIRNEKRMLQQSV 321 Query: 304 DALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRL 363 DAL DN R R + GS+ RPLKSL DMIKGKQGRFR+NLLGKRVDYS RSVI VGP L+L Sbjct: 322 DALFDNNRCKRPVLGSSNRPLKSLTDMIKGKQGRFRENLLGKRVDYSARSVIVVGPELKL 381 Query: 364 HQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLL 423 HQCGLPKK+ALELF+PFI +L+ A TIK+AKKM+ER++ VVWDIL+EV R HPV+L Sbjct: 382 HQCGLPKKIALELFQPFIIRRLKELNHADTIKSAKKMLERKDDVVWDILEEVTRSHPVML 441 Query: 424 NRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARAL 483 NRAPTLHR+GIQAFEPVLIEG AI++HPLVC +NADFDGDQMAVH+PL++EAQ+EA L Sbjct: 442 NRAPTLHRMGIQAFEPVLIEGNAIRIHPLVCKGFNADFDGDQMAVHLPLSIEAQVEATVL 501 Query: 484 MMSTNNILSPANGEPIIVPSQDVVLGLYYMT-----RDCVNAKGEGMVLTGPKEAERLYR 538 MMSTNNI SPANG PII PSQD+V+G YY+T D G+GMV P E R + Sbjct: 502 MMSTNNIFSPANGNPIITPSQDIVMGCYYLTASRGNEDEAVEAGDGMVFHSPVELFRAHA 561 Query: 539 SGLASLHARVKVR-------ITEYEKDANG-----ELVAKTS-LKDTTVGRAILWMIV-P 584 HA+++VR I+E KD G EL K + L TTVGR I I+ P Sbjct: 562 ESKLGYHAKIRVRLPIEKKVISEI-KDEKGNPRAEELPRKANGLVRTTVGRVIFNDILHP 620 Query: 585 KGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDM 644 K Y + L K +S+++ CY++LG + T+ D++ TGF +A RSG S D+ Sbjct: 621 KMAFYDL---PLSSKHLSRIIADCYQVLGRRETIALLDRMKETGFRHATRSGLSFAASDL 677 Query: 645 VIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTE 704 PE K ++ E + EV +++ F G++T ERYNKVID+W A D ++K MM +L Sbjct: 678 RTPENKEGVLKEKDKEVDKVRRNFDRGIITETERYNKVIDLWMEARDLITKRMMTDL--- 734 Query: 705 TVINRDGQEEKQVS------FNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETP 758 RD + + QV+ N IY+MA SGARG QIRQLAGMRGLMAKP G+IIETP Sbjct: 735 ----RDDRRKDQVTGREVPYLNPIYLMAHSGARGGIEQIRQLAGMRGLMAKPSGAIIETP 790 Query: 759 ITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHE 818 I +NFREGL VL+YF STHGARKGLADTALKTA+SGYLTR+L DVAQ++V+T DCGT + Sbjct: 791 IKSNFREGLTVLEYFSSTHGARKGLADTALKTADSGYLTRKLADVAQNVVITMHDCGTTQ 850 Query: 819 GIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVD 878 GI + +G +V L D + GRV+ ++ P T ++++ N ++ LE+ +D Sbjct: 851 GISKGVMYKGDEVDRSLSDAIRGRVSRSEIAHPTTGEVILAENEMITPGKAKELEKLGID 910 Query: 879 AVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIG 938 + VRS ++C GVC CYG DLA G I+ G A+G+IAAQSIGEPGTQLTMRTFHIG Sbjct: 911 KILVRSPMTCQAPLGVCRLCYGMDLATGSIVEDGMAVGIIAAQSIGEPGTQLTMRTFHIG 970 Query: 939 GAA-SRA-AAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYK 996 GAA SR ++ + K G ++L + VVN G+ + + T LI E Y Sbjct: 971 GAAQSRGNVGDNEHKAKKGGIVQLERITVVVNDQGQSIALAPRTGEVLILRGKDIAERYG 1030 Query: 997 VPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGL 1056 VP+GA L +G++V G + WDPH++P+I E SG VRF D+I+G+T+ R+TD TG+ Sbjct: 1031 VPHGAELLVAEGQEVQQGTGLVKWDPHSVPLIAEDSGTVRFKDIIEGKTVRRETDRATGV 1090 Query: 1057 SSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQIS 1116 +++ DL P + I +G D + Y++ +A +Q+ +G ++S Sbjct: 1091 ERFTIMEHK------GDLHPQIVIETGRGKDDRV--------YYIHERANLQVVNGQKVS 1136 Query: 1117 SGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLV 1176 +G LA+ P+E T+DITGGLPRV +LFEARRP+ PA++AE+ G V K +R++ Sbjct: 1137 AGALLAKTPREVSQTQDITGGLPRVTELFEARRPRNPAVMAEVPGRVRIDPTRKRGKRII 1196 Query: 1177 ITPVDGSD------PYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVT 1230 + D E ++P + V +GE V GD + GP PHDIL++RG V Sbjct: 1197 EVIKETEDGKSLGEAREHLVPASAHIRVHQGEYVTEGDPLVHGPLVPHDILKIRGEQEVQ 1256 Query: 1231 RYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANR 1290 Y+V EVQ VYR Q V I+DKHIE+IV QMLRK + G + L G ++ + NR Sbjct: 1257 EYLVREVQSVYRSQRVDIDDKHIEIIVAQMLRKVKVTLTGDTGLLPGVVMDKFAFQEVNR 1316 Query: 1291 EL-----------EANGKVGATYSRD-------------------------------LLG 1308 L + G YSR+ LLG Sbjct: 1317 RLTDECVRVVNKGDTELVEGKVYSREAFEEERAAIEKDKKKKQPTFVVPEPASCEVQLLG 1376 Query: 1309 ITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD 1368 ITKA++ ++SFISAASFQETT+VLTEAA+A K D L GLKENVI+G LIPAGTG+ HQ+ Sbjct: 1377 ITKAAVQSDSFISAASFQETTKVLTEAALASKVDYLVGLKENVILGHLIPAGTGFKTHQE 1436 Query: 1369 RMRR--------RAAGEAPAAPQVTA 1386 + RAA AP VTA Sbjct: 1437 AEVKVNVPGAAGRAAPVEEVAPDVTA 1462 >UniRef50_D2QMP3 DNA-directed RNA polymerase, beta' subunit n=4 Tax=Bacteria RepID=D2QMP3_9SPHI Length = 1449 Score = 1367 bits (3539), Expect = 0.0, Method: Compositional matrix adjust. Identities = 704/1443 (48%), Positives = 977/1443 (67%), Gaps = 103/1443 (7%) Query: 5 LKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGP 64 + F K + +F ++ I+LASP+ I S+GEV +PETINYRT+KPE GLFC RIFGP Sbjct: 1 MSFKKNKKLNSDFASVTISLASPESILESSYGEVTQPETINYRTYKPEMGGLFCERIFGP 60 Query: 65 VKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRI 124 VKD+EC CGKYKR++++G+IC++CGVEVT+ KVRRERMGHIEL P AHIW+ +SLP++I Sbjct: 61 VKDWECHCGKYKRIRYKGIICDRCGVEVTEKKVRRERMGHIELVVPVAHIWYFRSLPNKI 120 Query: 125 GLLLDMPLRDIERVLYFESYVVIEGGMT---NLERQQILTEEQYLDALEEFG-------- 173 G LL + + +++V+Y+E YVV++ G+ + + LTE++YLD +++ Sbjct: 121 GYLLGLSTKKLDQVIYYERYVVVQPGVKAEDGINQLDFLTEDEYLDIIDKLPSSNQHLDD 180 Query: 174 ---DEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQS 230 ++F AKMGAEA++ LL ++L++ LR S+ ++ + KR+K++EAF ++ Sbjct: 181 KDPNKFIAKMGAEALEMLLSRVELDELSYSLRHAAATDTSQQRKAEALKRLKVVEAFREA 240 Query: 231 G----NKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLA 286 N+PEWM++ ++PV+PP+LRPLVPLDGGRFATSDLNDLYRRVI RNNRLKRL+++ Sbjct: 241 NGRIENRPEWMVIKMVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIK 300 Query: 287 APDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKR 346 AP++I+RNEKRMLQEAVD+L DN R+ A+ R LKSL+DM+KGKQGRFRQNLLGKR Sbjct: 301 APEVILRNEKRMLQEAVDSLFDNSRKVNAVRSEGNRALKSLSDMLKGKQGRFRQNLLGKR 360 Query: 347 VDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEA 406 VDYSGRSVI VGP L+LH+CGLPK MA ELFKPF+ KL RG+ T+K+AKK+V+R++ Sbjct: 361 VDYSGRSVIVVGPELKLHECGLPKDMAAELFKPFVIRKLIERGIVKTVKSAKKIVDRKDP 420 Query: 407 VVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQM 466 V+WDIL+ V++ HPVLLNRAPTLHRLGIQAF+P LIEGKAIQLHPLVC A+NADFDGDQM Sbjct: 421 VIWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDGDQM 480 Query: 467 AVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAK----- 521 AVHVPL EA LEA LM++++NIL+PANG PI VPSQD+VLGLYY+T+ + Sbjct: 481 AVHVPLGQEAVLEASLLMLASHNILNPANGAPITVPSQDMVLGLYYVTKGRKSTPEYPIP 540 Query: 522 GEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWM 581 GEGM G +E G S HA +K R+ +D NG+LV K + DT GR + Sbjct: 541 GEGMTFYGTEEVVIGINEGKISKHANIKCRVKV--RDENGQLVYK--VIDTVAGRLLFNQ 596 Query: 582 IVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGI 641 VP+ + Y +N+ L KK + +++ ++I G T F D+I GF A R G S+G+ Sbjct: 597 AVPEEVGY--INELLTKKKLQQIIALIFKISGGARTAQFLDEIKELGFQMAFRGGLSIGL 654 Query: 642 DDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNL 701 D++IPE K ++ EA+AEV + + + GL+T ERYN+VIDIW N R+++ +M L Sbjct: 655 SDVMIPEAKQGLVEEAKAEVQAVWDNYLMGLITENERYNQVIDIWTRVNSRLTETLMKQL 714 Query: 702 QTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPD-------GSI 754 + + Q FNSIYMM SGARGS QIRQL GMRGLMAKP G I Sbjct: 715 EAD-----------QGGFNSIYMMMHSGARGSREQIRQLGGMRGLMAKPQKNLQGSVGEI 763 Query: 755 IETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDC 814 IE PI +NF+EGL+VL+YFISTHGARKGLADTALKTA++GYLTRRL DVAQD++++EDDC Sbjct: 764 IENPILSNFKEGLDVLEYFISTHGARKGLADTALKTADAGYLTRRLHDVAQDVIISEDDC 823 Query: 815 GTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEE 874 GT G+ ++ + + D+ EPL +R+LGR T D+ P T +++V L+ E+ ++E Sbjct: 824 GTLRGLQVSALKDNEDIVEPLSERILGRTTVHDIYDPLTKELIVASGELVTEEVAAHIDE 883 Query: 875 NSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRT 934 S++ V++RSV++C++ GVCA CYGR+LA G +++ GEA+GVIA+QSIGEPGTQLT+RT Sbjct: 884 TSIETVEIRSVLTCESRQGVCAKCYGRNLASGRMVDIGEAVGVIASQSIGEPGTQLTLRT 943 Query: 935 FHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNS----SGKLVITSRNTELKLIDEFGR 990 FH+GG AS A ++SI+ K G I+ +++V + + + ++ R+ E+++++ R Sbjct: 944 FHVGGTASNIAVDASIKAKFDGLIEFEEMRTVQSEDNEGNAQTIVMGRSGEVRIVNPNDR 1003 Query: 991 TKE--SYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITR 1048 + S VPYGA L DG+ V G+ + WDP+ +++E++G + F + DG T Sbjct: 1004 SVVLISNNVPYGAFLRVKDGDMVKKGDDICAWDPYNAVILSELTGTLNFDAIEDGITYRE 1063 Query: 1049 QTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTD---MPAQYFLPGKA 1105 + DE TG V+++S ++ PA+ + + +P D + Y LP + Sbjct: 1064 EFDEQTGFQEKVIIESRDKAKN-----PAIIVQGTTTLTLHLPDNDGGPLQKSYNLPVGS 1118 Query: 1106 IVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSF 1165 + +++G +I +G LA+IP+ G T+DITGGLPRV +LFEAR P PA+++EI G+V++ Sbjct: 1119 RLVVKEGQKIKAGQPLAKIPRNVGKTRDITGGLPRVTELFEARNPSNPAVVSEIDGVVTY 1178 Query: 1166 GKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRG 1225 G +G R + I DG+ + ++P + + V + + V G +SDG P DIL ++G Sbjct: 1179 GAIKRGNREIFIESRDGTKK-KYLVPLSKFILVQDNDFVRAGAPLSDGAITPSDILAIKG 1237 Query: 1226 VHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQV----- 1280 AV Y+VNE+Q+VYRLQGVKINDKHIE IVRQM++K I+++G ++FLEG+ V Sbjct: 1238 PTAVQEYLVNEIQEVYRLQGVKINDKHIEAIVRQMMQKVEIIDSGDTNFLEGQVVDKWAF 1297 Query: 1281 --EYSRVKIANRELEA----NGKVGATYS---------------------RD-------- 1305 E +V A ++A N K G + RD Sbjct: 1298 REENDKVLDAKVVMDAGDSPNVKPGQIVTSRQLRDENSSLKRRDQALVTVRDAMAAVSQP 1357 Query: 1306 -LLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 L+GIT++SL T+SFISAASFQETT+VL+EA++ GKRD L GLKENVIVG LIPAGTG Sbjct: 1358 TLMGITQSSLGTDSFISAASFQETTKVLSEASIRGKRDVLDGLKENVIVGHLIPAGTGLR 1417 Query: 1365 YHQ 1367 +Q Sbjct: 1418 RYQ 1420 >UniRef50_Q3KM48 DNA-directed RNA polymerase subunit beta' n=63 Tax=Bacteria RepID=RPOC_CHLTA Length = 1396 Score = 1351 bits (3496), Expect = 0.0, Method: Compositional matrix adjust. Identities = 695/1391 (49%), Positives = 950/1391 (68%), Gaps = 78/1391 (5%) Query: 17 FDAIKIALASPDMIR-SWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKY 75 FD ++I +AS IR WS GE+KKPETINYRTFKPE+ GLFC +IFGP KD+EC CGKY Sbjct: 18 FDKLEIGIASDVTIRDKWSCGEIKKPETINYRTFKPEKGGLFCEKIFGPTKDWECYCGKY 77 Query: 76 KRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDI 135 K++KH+G++C++CGVEVT +KVRRERM HIELA P HIWF K+ PSRIG +L M D+ Sbjct: 78 KKIKHKGIVCDRCGVEVTLSKVRRERMAHIELAVPIVHIWFFKTTPSRIGNVLGMTASDL 137 Query: 136 ERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFG-DEFDAKMGAEAIQALLKSMDL 194 ERV+Y+E YVVI+ G T+L ++Q+L + +Y + +E++G D F AKMG EA+ LLKS DL Sbjct: 138 ERVIYYEEYVVIDPGNTDLVKKQLLNDAKYREVVEKWGKDAFVAKMGGEAVYDLLKSEDL 197 Query: 195 EQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVP 254 E +L+E L +T S+ R KL KR+K++E FV S N+PEWM+L +PV+PPDLRPLVP Sbjct: 198 ESLLGELKERLRKTKSQQARMKLAKRLKIVEGFVSSSNRPEWMVLKNIPVVPPDLRPLVP 257 Query: 255 LDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGR 314 LDGGRFATSDLNDLYRRVINRNNRLK +L L P++IVRNEKRMLQEAVDAL DNGR G Sbjct: 258 LDGGRFATSDLNDLYRRVINRNNRLKAILRLKTPEVIVRNEKRMLQEAVDALFDNGRHGH 317 Query: 315 AITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMAL 374 + G+ RPLKSL++M+KGK GRFRQNLLGKRVDYSGRSVI VGP L+ +QCGLPK+MAL Sbjct: 318 PVMGAGNRPLKSLSEMLKGKNGRFRQNLLGKRVDYSGRSVIIVGPELKFNQCGLPKEMAL 377 Query: 375 ELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGI 434 ELF+PFI +L+ +G TI++AKKM++R VWD+L+E+I+ HPVLLNRAPTLHRLGI Sbjct: 378 ELFEPFIIKRLKDQGSVYTIRSAKKMIQRGAPEVWDVLEEIIKGHPVLLNRAPTLHRLGI 437 Query: 435 QAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPA 494 QAFEPVLIEGKAI++HPLVCAA+NADFDGDQMAVHVPL++EAQLEA+ LMM+ +NI P+ Sbjct: 438 QAFEPVLIEGKAIRVHPLVCAAFNADFDGDQMAVHVPLSIEAQLEAKVLMMAPDNIFLPS 497 Query: 495 NGEPIIVPSQDVVLGLYYMTRDCVNAKGE---------------------GMVLTGPKEA 533 +G+P+ PS+D+ LG+YY+ D E G +L Sbjct: 498 SGKPVATPSKDMTLGIYYLMADPTYFPEEHGGKTKAFKDEVEVLRALNAGGFILKDEICG 557 Query: 534 ERLYRSGLA-SLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIV 592 R +G +H ++KVRI +G+++ +TT GR IVPK L + Sbjct: 558 SRRDETGRGIHIHEKIKVRI-------DGQII------ETTPGRVFFNTIVPKELGFQ-- 602 Query: 593 NQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHE 652 N ++ K IS+++ CY+ +GL+ TV F D + GF + ++ S+G+ D+ IPE K E Sbjct: 603 NYSMPSKRISELILQCYKKVGLEATVRFLDDLKELGFVQSTKAAISMGLKDVKIPEIKKE 662 Query: 653 IISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQ 712 I+ +A +VA +++Q++ G++T GER++K I IW +D +S A+ ++ +T Sbjct: 663 ILKDAYDKVAVVKKQYEDGIITDGERHSKTISIWTEVSDLLSNALYSEIKKQT------- 715 Query: 713 EEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQY 772 N +++M DSGARG+ +Q++QL +RGLMAKP+G+IIE+PIT+NFREGL VL+Y Sbjct: 716 ---NSKHNPLFLMIDSGARGNKSQLKQLGALRGLMAKPNGAIIESPITSNFREGLTVLEY 772 Query: 773 FISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVK 832 IS+HGARKGLADTALKTA+SGYLTRRLVDVAQD+++TE DCGT I ++ + +G + Sbjct: 773 SISSHGARKGLADTALKTADSGYLTRRLVDVAQDVIITERDCGTLNHIEVSTIRQGSEEL 832 Query: 833 EPLRDRVLGRVTAEDVLKPG-TADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTD 891 PL+DRV GR +E++ +PG +++L +L + +++ +++VK+RS ++C++ Sbjct: 833 LPLKDRVYGRTVSENIYQPGDKSNVLAYAGDVLTSAQAEAIDDAGIESVKIRSTLTCESR 892 Query: 892 FGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQ 951 GVCA CYG +LA G +I GEA+G+IAAQSIGEPGTQLTMRTFH+GG A+ ++ I Sbjct: 893 RGVCAKCYGLNLANGRLIGLGEAVGIIAAQSIGEPGTQLTMRTFHLGGIAA-TSSTPEIV 951 Query: 952 VKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYK--------------- 996 + G + +++ VV+ G ++ ++ L L+ + GR+ YK Sbjct: 952 AECDGILVYLDLRVVVDQEGNNLVLNKMGALHLVQDEGRSLSEYKKLLSTKSIESLATFP 1011 Query: 997 VPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGL 1056 V GA + DG VA G+ +A + H +P+I + GFV + D+++G + + T++ TGL Sbjct: 1012 VELGAKILVNDGAAVAAGQRIAEVELHNIPIICDKPGFVHYEDLVEGVSTEKVTNKNTGL 1071 Query: 1057 SSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQIS 1116 L+V ++ G +L P + I A N + GT Y +P AI+ +E+G +I+ Sbjct: 1072 VELIV----KQHRG--ELHPQIAIY-ADANMKELVGT-----YAIPSGAIISVEEGQRIA 1119 Query: 1117 SGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLV 1176 G LAR+P+ + TKDITGGLPRVA+L EAR+P++ A +A+I G+V F K KR LV Sbjct: 1120 PGMLLARLPRGAIKTKDITGGLPRVAELVEARKPEDAADIAKIDGVVDFKGIQKNKRILV 1179 Query: 1177 ITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNE 1236 + E +I + L V G+ V +G ++DG PH+IL + GV + +Y+VNE Sbjct: 1180 VRDEITGMEEEHLISLTKHLIVQRGDSVIKGQQLTDGLVVPHEILEICGVRELQKYLVNE 1239 Query: 1237 VQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANG 1296 VQ+VYRLQGV INDKH+E+IVRQML+K I + G + L GE V+ NR E +G Sbjct: 1240 VQEVYRLQGVDINDKHVEIIVRQMLQKVRITDPGDTTLLFGEDVDKKEFYEENRRTEEDG 1299 Query: 1297 KVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRL 1356 A LLGITKASL TESFISAASFQ+TTRVLT+AA + K D L G KENVI+G + Sbjct: 1300 GKPAQAVPVLLGITKASLGTESFISAASFQDTTRVLTDAACSSKTDYLLGFKENVIMGHM 1359 Query: 1357 IPAGTGYAYHQ 1367 IP GTG+ H+ Sbjct: 1360 IPGGTGFDTHK 1370 >UniRef50_A3EVS7 DNA-directed RNA polymerase n=9 Tax=Bacteria RepID=A3EVS7_9BACT Length = 1585 Score = 1337 bits (3459), Expect = 0.0, Method: Compositional matrix adjust. Identities = 703/1246 (56%), Positives = 908/1246 (72%), Gaps = 41/1246 (3%) Query: 153 NLERQQILTEEQYLDALEEFG-DEFDAKMGAEAIQALLKSMDLEQECEQLRE-ELNETNS 210 + +R + +++E++ EF ++GAEAI+ LLK+++LE+ ++ L+ S Sbjct: 358 DFKRHRPISKEEFERYKREFPRSNMKGEIGAEAIRTLLKNLNLEELATEMHALMLDPAVS 417 Query: 211 ETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYR 270 +KK++KR+K++EAF +SGN+PEWMIL V+PVLPPDLRPLVPLDGGRFATSDLNDLYR Sbjct: 418 SASKKKISKRLKIVEAFRKSGNRPEWMILDVIPVLPPDLRPLVPLDGGRFATSDLNDLYR 477 Query: 271 RVINRNNRLKRLLDLAAP--DIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLA 328 RVINRNNRLKRLLD+++P +I+ NE RMLQEAVDAL DNGRRGR I G+N+RPLKSL+ Sbjct: 478 RVINRNNRLKRLLDVSSPTPQLIIHNEIRMLQEAVDALFDNGRRGRVIRGANRRPLKSLS 537 Query: 329 DMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELR 388 DM+KGKQGRFRQNLLGKRVDYSGRSVI +GP L+L+QCGLPKKMALELFKPFI+ KLE R Sbjct: 538 DMLKGKQGRFRQNLLGKRVDYSGRSVIVIGPELKLNQCGLPKKMALELFKPFIFQKLEAR 597 Query: 389 GLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQ 448 GL + IK AKK VE+E+ VVWDILDEVI+EHPVLLNRAPTLHRLGIQAF+PVL+EGKAI+ Sbjct: 598 GLVSNIKTAKKKVEKEDPVVWDILDEVIQEHPVLLNRAPTLHRLGIQAFDPVLVEGKAIR 657 Query: 449 LHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVL 508 LHPLVCAA+NADFDGDQMAVHVPL++EAQLEAR LMMS NNILSPANG+PI+VP+QD+VL Sbjct: 658 LHPLVCAAFNADFDGDQMAVHVPLSVEAQLEARVLMMSINNILSPANGKPIMVPTQDMVL 717 Query: 509 GLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTS 568 G YY++++ +KGEG + +E Y +G+ HAR++VR+T DA+G++ KT Sbjct: 718 GCYYLSKERKGSKGEGFSFSSAEEVRIAYDAGVVEPHARIRVRMT----DASGQV--KTH 771 Query: 569 LKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTG 628 +TTVGR + I+P G+ + VN+ L KK ++ +++ C+R G + TV F D+I G Sbjct: 772 --ETTVGRVLFSGILPSGIRFEEVNKELTKKVLTNLIDQCFRKSGRQETVGFLDRIKQIG 829 Query: 629 FAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAA 688 F +A RSG S+ I DM IP+ K E I +A EV EI+ Q+ GL+TAGERYNKVID WA Sbjct: 830 FEFATRSGISIAIGDMRIPKNKSEAIEKANLEVLEIENQYNEGLITAGERYNKVIDKWAQ 889 Query: 689 ANDRVSKAMMDNLQTETVINRDG----QEEKQVSFNSIYMMADSGARGSAAQIRQLAGMR 744 + V+ MM L+ E + ++G + E V FNSIYMMADSGARGSA QIRQL GMR Sbjct: 890 VTELVADEMMKELKAEELAVQNGTAVSEGETPVRFNSIYMMADSGARGSAQQIRQLGGMR 949 Query: 745 GLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVA 804 GLMAKP G IIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVA Sbjct: 950 GLMAKPSGEIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVA 1009 Query: 805 QDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVL------KPGTADILV 858 QD+++TE+DCGT GI +T ++EGG+ EPL +R+LGRV AED+ + +I+V Sbjct: 1010 QDVIITEEDCGTLNGIEVTALVEGGETIEPLEERILGRVAAEDIFVTVLKGQERITEIVV 1069 Query: 859 PRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVI 918 ++E+ + ++E+ +D +K+RSV++C T GVCA CYGRDL+ G + GEAIG+I Sbjct: 1070 GAGEEINEEKIERIKESGLDLIKIRSVLTCQTRRGVCAACYGRDLSSGKRVELGEAIGII 1129 Query: 919 AAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSR 978 AAQSIGEPGTQLTMRTFHIGG A + A +S + K G ++ N+ +V N G + S+ Sbjct: 1130 AAQSIGEPGTQLTMRTFHIGGTA-QVAKQSIHEAKRDGKVRYDNLTTVRNKEGANIAMSK 1188 Query: 979 NTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFT 1038 N +L ++ GR KE Y + YGA + DG++V+ G + WDP + P++TE SG V F Sbjct: 1189 NGKLVIVGLDGREKERYSIVYGARVLLEDGKEVSIGSKLVEWDPFSTPILTEASGQVVFR 1248 Query: 1039 DMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQ 1098 D+ D T+ + DE +GL S V++D+A+ +++RP ++I +A G+ + Sbjct: 1249 DIQDRVTMREEIDEASGLKSRVIIDNAK-----QNMRPRIEIREA--------GSKNRKE 1295 Query: 1099 YFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAE 1158 Y LP A + +E+ +S+GD +A+IP+ES TKDITGGLPRVA+LFEAR+PKE A++ E Sbjct: 1296 YPLPIGAHILVEEKENVSTGDVIAKIPRESTKTKDITGGLPRVAELFEARKPKEQAVITE 1355 Query: 1159 ISGIVSFGKETKGK-RRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAP 1217 I GIV F +G+ R+++ + + E IPK + ++V E + VE G+ + DG P Sbjct: 1356 IEGIVEFKDGRQGRSNRVILVKNEQGEEKEYTIPKGKHVSVHENDWVEAGEPLMDGSVNP 1415 Query: 1218 HDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEG 1277 HDIL + G + Y+VNEVQ+VYRLQGV INDKHIEVIVRQMLRK I + G +DFL G Sbjct: 1416 HDILNVLGPQDLMTYLVNEVQEVYRLQGVSINDKHIEVIVRQMLRKVRIDDPGDTDFLVG 1475 Query: 1278 EQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAV 1337 QV+ + N ++ GK+ A LLGITKA+L+TESFISAASFQETTRVLTEAA+ Sbjct: 1476 SQVDRGIFEEVNDQIVQLGKLPAKGGSMLLGITKAALSTESFISAASFQETTRVLTEAAI 1535 Query: 1338 AGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQ 1383 GK D L GLKENVIVGRLIPAGTG+ + R A GE + Q Sbjct: 1536 NGKTDALVGLKENVIVGRLIPAGTGFP----KFRMTAVGEVESESQ 1577 Score = 246 bits (628), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 106/143 (74%), Positives = 126/143 (88%) Query: 8 LKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKD 67 L+ ++ F A+KI LAS + IRSWSFGEVKKPETINYR+FKPERDGLFCA+IFGPVKD Sbjct: 48 LRIDSEVMSFSALKIMLASSEKIRSWSFGEVKKPETINYRSFKPERDGLFCAKIFGPVKD 107 Query: 68 YECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLL 127 +EC CGKYKR+KHRGVIC+KCGVEV Q+KVRRERMGHIELA+P AHIWFLK LPSRIG L Sbjct: 108 WECNCGKYKRMKHRGVICDKCGVEVIQSKVRRERMGHIELAAPVAHIWFLKGLPSRIGNL 167 Query: 128 LDMPLRDIERVLYFESYVVIEGG 150 LDM ++D++++LYFESYV+ + G Sbjct: 168 LDMTIKDLDQILYFESYVITDLG 190 >UniRef50_B0SAG0 DNA-directed RNA polymerase subunit beta' n=33 Tax=Bacteria RepID=RPOC_LEPBA Length = 1433 Score = 1327 bits (3435), Expect = 0.0, Method: Compositional matrix adjust. Identities = 699/1414 (49%), Positives = 937/1414 (66%), Gaps = 115/1414 (8%) Query: 17 FDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYK 76 F++I I LASP+ I+ WSFGEVKKPETINYRT KPERDGLFC +IFG KD+EC CGK+K Sbjct: 7 FESITIRLASPERIKEWSFGEVKKPETINYRTLKPERDGLFCEKIFGTTKDWECYCGKFK 66 Query: 77 RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIE 136 ++++GV+C+KCGVEVT +KVRRERMGHIELA+P +HIW+ +S+PSR+GLLLDM + ++ Sbjct: 67 SIRYKGVVCDKCGVEVTHSKVRRERMGHIELAAPVSHIWYYRSVPSRMGLLLDMTINQLK 126 Query: 137 RVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQ 196 VLYFE YV+I+ + R +++ E++Y + L+E+GD+F A +G +AI+ LL +D++ Sbjct: 127 SVLYFEKYVIIDPADSGRNRGELIDEDEYHNYLDEYGDKFIAGIGGDAIKELLARIDVDA 186 Query: 197 ECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLD 256 E +R+++ + N + K++ KR+++LEAF SGN+PEWM+L V+PV+PP+LRP+V L+ Sbjct: 187 EARVIRQKIQDKN-KISDKRIFKRLEVLEAFRDSGNRPEWMVLDVVPVIPPELRPMVQLE 245 Query: 257 GGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAI 316 GGRFATSDLNDLYRRVINRNNRLKRLL L AP+IIVRNEKRMLQEAV AL DN RR R + Sbjct: 246 GGRFATSDLNDLYRRVINRNNRLKRLLALKAPEIIVRNEKRMLQEAVGALFDNSRRKRTV 305 Query: 317 TGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALEL 376 G RPLKS++DM+KGKQGRFRQNLLGKRVDYSGRSVI VGP L+ HQ GLPKKMALEL Sbjct: 306 KGKGNRPLKSISDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKYHQMGLPKKMALEL 365 Query: 377 FKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQA 436 FKPFI +L LA IK+AKK +E E+ V+D+L+ V++EHPVLLNRAPTLHRLGIQA Sbjct: 366 FKPFIMKRLVDLELAPNIKSAKKKIEAEDKEVFDVLETVVKEHPVLLNRAPTLHRLGIQA 425 Query: 437 FEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANG 496 F PVL+EGKAI+LHPLVC A+NADFDGDQMA+HVPL +AQLE LM+S +NIL+PANG Sbjct: 426 FLPVLVEGKAIKLHPLVCHAFNADFDGDQMAIHVPLAPKAQLETWMLMLSPHNILNPANG 485 Query: 497 EPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYE 556 +PI P+QD+VLG+YY+T + +AKGEG TG +E +Y ++ R K+ + Sbjct: 486 QPICGPTQDIVLGIYYLTSEVKDAKGEGKFFTGLEEV--MYAIETKTVEIRSKISVLH-- 541 Query: 557 KDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKP 616 G+++ +TT GR I ++PKG Y +N+ LG K +K++ Y G Sbjct: 542 ---EGKII------ETTPGRLIFNQVMPKG--YVYINRTLGDKETNKIIADVYEKFGPGI 590 Query: 617 TVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAG 676 TV+ D+I G+ YA ++ IDD+ + +K ++++A EV + +++ G++T Sbjct: 591 TVVMLDEIKRLGYRYATVFAPTISIDDIRVSPQKEGLVNDANKEVEKADMEYRKGIITNE 650 Query: 677 ERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQ 736 ER KVI+IW NDR+++ M L E+ Q FN +Y+MA SGARGS Q Sbjct: 651 ERRKKVIEIWTKTNDRITEGMFKEL-----------EKDQAGFNPVYVMAASGARGSKQQ 699 Query: 737 IRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYL 796 IRQLAGMRGLMAKP G IIE I +NFREGL VL++FISTHGARKGLADTALKTA++GYL Sbjct: 700 IRQLAGMRGLMAKPSGEIIELAIRSNFREGLGVLEFFISTHGARKGLADTALKTADAGYL 759 Query: 797 TRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADI 856 TRRLVD++QD++V+EDDCGT I + V EG +V L DRV GR TAED++ P T + Sbjct: 760 TRRLVDISQDVIVSEDDCGTKANITLGIVKEGENVIVSLADRVFGRYTAEDLVDPVTEKV 819 Query: 857 LVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIG 916 + P++TL+ +E D +KVRS ++C + G+C CYG D+AR GEA+G Sbjct: 820 VFPKDTLITRALGQQIENLGYDKIKVRSPLTCRSRHGICTKCYGMDMARLVPAEIGEAVG 879 Query: 917 VIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVIT 976 IAAQSIG+PGTQLTMRTFH+GGAAS E +V + +K N + V N++G V Sbjct: 880 TIAAQSIGQPGTQLTMRTFHVGGAASATIQEKEHKVPFRSLVKSINGRLVTNANGSKVFA 939 Query: 977 SRNTEL--KLIDEFG-RTKESYKVPYGAVLAKG--------------------------- 1006 R T + +LI EF + S ++ G L KG Sbjct: 940 RRGTIIVNRLIQEFNTESLSSVRIVDGQRLEKGEVFASQVGESIEQRITSDQAGTVSLIG 999 Query: 1007 -----------------------DGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDG 1043 +G+ V + +A +DP+ ++E +G + + D+ G Sbjct: 1000 TTLRILGDDIVIPVKIGTILKSEEGQIVEENKALAEFDPYNEVAVSETAGTIVWEDLEIG 1059 Query: 1044 QTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIP----GTDMPAQY 1099 + + R D T S+++ LK+V+ Q D L+P G+D Y Sbjct: 1060 KNVRRDVDPKT--SNII-----------------LKVVE-QKKDRLVPKVIVGSD---GY 1096 Query: 1100 FLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEI 1159 +P A++Q ++G ++ GD + +IP + T+DITGGLPRV +LFEARRPK+ LAEI Sbjct: 1097 SVPVDALLQFQNGDKVREGDVIFKIPSVAEKTRDITGGLPRVDELFEARRPKDACTLAEI 1156 Query: 1160 SG-IVSFGKETKGKRRLVITPVDGSDPYEE----MIPKWRQLNVFEGERVERGDVISDGP 1214 G I G+ K KR L I P P +E IP +Q+ V +G+ V+RGD + +G Sbjct: 1157 DGKIEDKGEIVKEKRILYILP---DSPEQEKVKVAIPIGKQIRVRQGDFVKRGDQLDEGN 1213 Query: 1215 EAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDF 1274 PHDIL ++G A+ Y+V+EVQ+VYRLQGV INDKHIEV+VR MLRK I ++G + F Sbjct: 1214 FDPHDILAIKGPSALHEYLVSEVQEVYRLQGVHINDKHIEVVVRSMLRKVIITDSGDTSF 1273 Query: 1275 LEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTE 1334 + +QV+ N +E G A + LLG+TKASL TES+ SAASFQETT+VLT+ Sbjct: 1274 VNQQQVDKFLFDEENDRVEQEGGSPAQGTPVLLGLTKASLNTESYFSAASFQETTKVLTD 1333 Query: 1335 AAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD 1368 AA+ GK D L GLKENVI+G +IPAGTG ++D Sbjct: 1334 AAIKGKTDNLMGLKENVIIGHMIPAGTGMKKYRD 1367 >UniRef50_Q8RHI7 DNA-directed RNA polymerase subunit beta' n=22 Tax=Bacteria RepID=RPOC_FUSNN Length = 1319 Score = 1295 bits (3350), Expect = 0.0, Method: Compositional matrix adjust. Identities = 666/1367 (48%), Positives = 932/1367 (68%), Gaps = 60/1367 (4%) Query: 17 FDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYK 76 F+ I+I LASP+ I WS GEV KPETINYRT PERDGLFC IFGP KD+EC CGKYK Sbjct: 6 FEKIRIKLASPEKILEWSHGEVTKPETINYRTLNPERDGLFCEIIFGPTKDWECSCGKYK 65 Query: 77 RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIE 136 R++++G++CEKCGVEVT+ KVRRERMGHI LASP +HIW+ K P+++ L++ + +++E Sbjct: 66 RMRYKGLVCEKCGVEVTRAKVRRERMGHITLASPVSHIWYSKGSPNKMSLIIGISSKELE 125 Query: 137 RVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQ 196 VLYF Y+V + +E +ILTE++Y + +G++F+A MGA+ I LL ++DLE+ Sbjct: 126 SVLYFARYIVTSSQESTVEVGKILTEKEYKLLKQLYGNKFEAYMGADGILKLLTAIDLEK 185 Query: 197 ECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLD 256 ++L EL E NS KRKKL KR+K++ F+ SGN+PEWMILT +PV+P +LRP+V LD Sbjct: 186 LRDELENELAEANSAQKRKKLVKRLKIVRDFIASGNRPEWMILTNVPVIPAELRPMVQLD 245 Query: 257 GGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAI 316 GGRFATSDLNDLYRRVINRNNRLK+LL++ AP+I+V+NEKRMLQEAVDAL+DNGRRG+ + Sbjct: 246 GGRFATSDLNDLYRRVINRNNRLKKLLEIRAPEIVVKNEKRMLQEAVDALIDNGRRGKPV 305 Query: 317 TGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALEL 376 N R LKSL+DM+KGKQGRFRQNLLGKRVDYS RSVI VGP L+++QCG+PKKMALEL Sbjct: 306 VAQNNRELKSLSDMLKGKQGRFRQNLLGKRVDYSARSVIVVGPSLKMNQCGIPKKMALEL 365 Query: 377 FKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQA 436 +KPFI +L R LA IK AKK+VE + VW ++++VI +HPVLLNRAPTLHRL IQA Sbjct: 366 YKPFIMRELVRRELANNIKMAKKLVEESDDKVWAVIEDVIADHPVLLNRAPTLHRLSIQA 425 Query: 437 FEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANG 496 F+PVLIEGKAI+LHPLVC+A+NADFDGDQMAVH+ L+ E+ +EA+ LM + NNI+SP++G Sbjct: 426 FQPVLIEGKAIRLHPLVCSAFNADFDGDQMAVHLTLSPESMMEAKLLMFAPNNIISPSSG 485 Query: 497 EPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYE 556 EPI VPSQD+V+G +YMT++ KGEG + + ++ Y++ HA +KVR+ Sbjct: 486 EPIAVPSQDMVMGCFYMTKERPGEKGEGKLFSNIEQVITAYQNDKVGTHALIKVRM---- 541 Query: 557 KDANGELVAKTSLKDTTVGRAILWMIVPK-GLPYSIVNQALGKKAISKMLNTCYRILGLK 615 NGEL+ +TT GR + I+P+ Y ++ GKK I ++ + Y G Sbjct: 542 ---NGELI------ETTPGRVLFNEILPEIDRNY---HKTYGKKEIKSLIKSLYEAHGFT 589 Query: 616 PTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTA 675 T +++ G+ Y +G SVGI+D+ +P KK ++++A+ EVA+I + ++SG + Sbjct: 590 ETAELINRVKNFGYHYGTFAGVSVGIEDLEVPPKKKSLLNQADKEVAQIDKDYKSGKIIN 649 Query: 676 GERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAA 735 ERY K I++W+ + V+ AMM NL FN +YMMA SGARG+ + Sbjct: 650 EERYRKTIEVWSRTTEAVTDAMMKNLD---------------EFNPVYMMATSGARGNVS 694 Query: 736 QIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGY 795 Q+RQLAGMRG MA G IE PI ANFREGL VL++F+S+HGARKGLADTAL+TA+SGY Sbjct: 695 QMRQLAGMRGNMADTQGRTIEVPIKANFREGLTVLEFFMSSHGARKGLADTALRTADSGY 754 Query: 796 LTRRLVDVAQDLVVTEDDCGTHEGIMMTPVI-EGGDVKEPLRDRVLGRVTAEDVLKPGTA 854 LTRRLVD++ +++V E+DC THEGI + ++ G + E L +R+ GRV AED++ G Sbjct: 755 LTRRLVDISHEVIVNEEDCHTHEGIEVEALVGANGKIIEKLSERINGRVLAEDLVHKGKK 814 Query: 855 DILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEA 914 + RNT++H+ D +EE + VK+RS ++C + GVC CYG DL+ + I GEA Sbjct: 815 --IAKRNTMIHKDLLDKIEELGIKKVKIRSPLTCALEKGVCQKCYGMDLSNYNEILLGEA 872 Query: 915 IGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLV 974 +GV+AAQSIGEPGTQLTMRTFH GG A A +S + +N G + ++K+ + +G+ V Sbjct: 873 VGVVAAQSIGEPGTQLTMRTFHTGGVAGAATVVNSKKAENDGEVSFRDIKT-IEINGEDV 931 Query: 975 ITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGF 1034 + S+ ++ + D ++V G+V+ +G++V G+ + +DP+ +P+I+ G Sbjct: 932 VVSQGGKIIIAD------NEHEVDSGSVIRVTEGQKVKEGDVLVTFDPYHIPIISSHDGK 985 Query: 1035 VRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTD 1094 V++ T DE + +V+ R+ D P + I+D + + Sbjct: 986 VQYRHF----TPKNIRDEKYDVHEYLVV----RSVDSVDSEPRVHILDKKNEKL------ 1031 Query: 1095 MPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPA 1154 A Y +P A + + DG ++ GD +A+I + GTKDITGGLPRV +LFEAR PK A Sbjct: 1032 --ATYNIPYGAYMMVRDGAKVKKGDIIAKIIKLGEGTKDITGGLPRVQELFEARNPKGKA 1089 Query: 1155 ILAEISGIVSFGKETKGKRRLV-ITPVDGSDPYEE-MIPKWRQLNVFEGERVERGDVISD 1212 LAEI G + K + R+V + ++ + ++E +IP +L V +G +++ GD I++ Sbjct: 1090 TLAEIDGRIEILTTKKKQMRVVNVRSLENPEEFKEYLIPMGERLVVTDGLKIKAGDKITE 1149 Query: 1213 GPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSS 1272 G +P+D+L ++G+ A ++I+ VQ VYR QGV +NDKHIE+IV+QM RK I+++G+S Sbjct: 1150 GAISPYDVLNIKGLVAAEQFILESVQQVYRDQGVTVNDKHIEIIVKQMFRKVRIIDSGAS 1209 Query: 1273 DFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVL 1332 FLE E +E V + N++LE GK Y + GITKA++ T SFISAASFQETT+VL Sbjct: 1210 LFLEDEVIEKRVVDLENKKLEEQGKALIKYEPVIQGITKAAVNTGSFISAASFQETTKVL 1269 Query: 1333 TEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAP 1379 + AA+ GK D L GLKENVI+G+ IPAGTG+ ++ R + P Sbjct: 1270 SNAAIEGKVDYLEGLKENVILGKKIPAGTGFNKYKSIKVRYNTDDKP 1316 >UniRef50_C9RPE5 DNA-directed RNA polymerase n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RPE5_FIBSS Length = 1432 Score = 1290 bits (3337), Expect = 0.0, Method: Compositional matrix adjust. Identities = 676/1425 (47%), Positives = 918/1425 (64%), Gaps = 125/1425 (8%) Query: 19 AIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRL 78 I I LASP+ IR WS+GEV KPETINYR+FKPE+DGLFC +IFGP+K++EC CGKYKR+ Sbjct: 6 GISIHLASPEQIRFWSYGEVTKPETINYRSFKPEKDGLFCEKIFGPIKNWECNCGKYKRI 65 Query: 79 KHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERV 138 +++GV+C++CGVEVT +KVRRERMGHIEL AH WF+++ P IG LL++ +D++ + Sbjct: 66 RYKGVVCDRCGVEVTHSKVRRERMGHIELVCSLAHTWFVRNQPCVIGALLNLNTKDLDHI 125 Query: 139 LYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEA-------------- 184 +Y+E YVVI+ G TNLE+ ++ EE+ + ++E G EF AKMGA A Sbjct: 126 IYYEKYVVIDPGTTNLEKNSLIDEEEKQNLIDE-GREFVAKMGAAAIKQLLDSLDLTKLS 184 Query: 185 ----IQALLKSMDLEQEC---------------EQLREELNETNSETKRKKLTKRIK-LL 224 +QA KS + E E R N + KR + +K L Sbjct: 185 EELRLQATSKSKTKQDEAVNRLKVVEAFRKSQMESFRTYYNNPEAAQKRDRDKIWLKGLA 244 Query: 225 EA--------------FVQS-----------------GNKPEWMILTVLPVLPPDLRPLV 253 EA FV + N+P WMIL V+PVLPPDLRPLV Sbjct: 245 EAVAEFKVDYEAKHSDFVLADAYEEFRHKYPTEARLFANQPSWMILDVIPVLPPDLRPLV 304 Query: 254 PLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRG 313 PL+GGRFATSDLN+LYRRVINRNNRLK+L+D+ P++I+ NEKRMLQEAVD L D+ RR Sbjct: 305 PLEGGRFATSDLNELYRRVINRNNRLKKLIDIRTPNVILCNEKRMLQEAVDQLFDSDRR- 363 Query: 314 RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMA 373 + + RPLKSLA+++KGKQGRFR NLLGKRVDYSGRSVI V P LRL QCGLPK+MA Sbjct: 364 -TVRAGSARPLKSLAELLKGKQGRFRMNLLGKRVDYSGRSVIVVDPELRLDQCGLPKRMA 422 Query: 374 LELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLG 433 LEL+KPFI +LE G+ T K+AKK V+ VWDIL+++I +HPV+LNRAPTLHRLG Sbjct: 423 LELYKPFIIQRLEEEGIVYTHKSAKKYVDANRPEVWDILEQIIEDHPVMLNRAPTLHRLG 482 Query: 434 IQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSP 493 IQAF P LIEG AI LHPLVC A+N DFDGDQMAVH+PL+ EAQLE R LM+S+NNIL P Sbjct: 483 IQAFYPKLIEGNAIHLHPLVCPAFNTDFDGDQMAVHLPLSFEAQLECRVLMLSSNNILHP 542 Query: 494 ANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRIT 553 ++G+PI VP QD+VLGLYY+T+ N KGEGM P EA Y +G L+A + +++ Sbjct: 543 SSGQPITVPKQDMVLGLYYLTKPRPNRKGEGMHFYAPAEAISAYENGAVDLNANIYLKLK 602 Query: 554 EYEKDANGELVAKTSLKD-----TTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTC 608 +K G + L++ TTVGR I IVP L Y +N+ L K+ I+ ++ Sbjct: 603 AGQKIYKGSVEKDIILEEDCIIKTTVGRIIFNDIVPPALGY--INETLNKEFITNSIDNL 660 Query: 609 YRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQF 668 Y G + TV + + + GF +A ++G S+ + D++IP++K E+++ A E+ +I+ + Sbjct: 661 YHRAGNRVTVDYLNNLKAIGFKWATKAGTSIAVADILIPKEKQELLNAATKEIRKIRALY 720 Query: 669 QSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADS 728 + G++T GERYN+ ID+W+ V+ D+L + R+G FN +YMMADS Sbjct: 721 EDGVITDGERYNQTIDVWSKTTSNVAAKQWDSLSHD----RNG-------FNPLYMMADS 769 Query: 729 GARGSAAQIRQLAGMRGLMAKP-----DGSIIETPITANFREGLNVLQYFISTHGARKGL 783 GARG+ I+QLA MRGL KP +IE PI + +REGLN ++YFIS+HGARKGL Sbjct: 770 GARGNREYIKQLAAMRGLTQKPIKQLGGQEVIENPIKSCYREGLNEMEYFISSHGARKGL 829 Query: 784 ADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRV 843 ADTALKTA++GYLTRRLVDV DLV+TE DCGT GI ++ + +G D PL +R+LGR Sbjct: 830 ADTALKTADAGYLTRRLVDVGLDLVITEKDCGTANGIEVSALKDGDDTVIPLEERLLGRA 889 Query: 844 TAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDL 903 +D+ P T +++V L++E+ + + +++RSV++C++ GVCA CYGR L Sbjct: 890 PVDDIKHPVTGEVIVKAGELVNERDLPKISAAGFEHIRMRSVLTCESRNGVCAKCYGRML 949 Query: 904 ARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNV 963 + G ++ GEA+GV+AA SIGEPGT+LT+RTFHIGG S E+ + G IKL + Sbjct: 950 SSGRPVDLGEAVGVLAAHSIGEPGTRLTLRTFHIGGVHSPLTVENCKKAIVDGRIKLEQI 1009 Query: 964 KSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPH 1023 +++ + K+V+ SR EL + D G K Y++PYG+++ G+ V G+ + WDP+ Sbjct: 1010 ETIEHEGQKIVV-SRMGELVIFDNTGINKGRYQIPYGSIMHVGNNAIVKKGDCMFEWDPY 1068 Query: 1024 TMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDA 1083 P+IT V+G V F +M+D Q G L PA+ I D Sbjct: 1069 NSPIITNVAGNVVFFNMVDKQ------------------------HGKNKLHPAIIINDD 1104 Query: 1084 QGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVAD 1143 +G V + LP AI ++ G +++SG +A++P+ +G T+DITGGLPR+A+ Sbjct: 1105 RGEKV--------GYFMLPDGAIPAVKQGDKVASGQVIAKLPRAAGKTRDITGGLPRIAE 1156 Query: 1144 LFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGER 1203 +FEAR P+ A +A + G+V +G E + + +VI ++G + + +P L V EG+R Sbjct: 1157 IFEARVPRNKAFIAPVDGLVKYGNEVRNYQEIVIQQMNGYE-MKMFVPLGIHLIVNEGDR 1215 Query: 1204 VERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRK 1263 V G IS+G PHDIL + G ++VNEVQ VYRLQGV I DKHIE +VRQM+RK Sbjct: 1216 VRAGQKISEGCVDPHDILDILGPEQAELHLVNEVQAVYRLQGVAIADKHIECVVRQMMRK 1275 Query: 1264 ATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAA 1323 I ++G SDFL GE++ ++ N L A GK ATY LLGITKASLAT+SFISAA Sbjct: 1276 VRITDSGDSDFLPGEEITKDSLRTENDRLIALGKAIATYQPMLLGITKASLATDSFISAA 1335 Query: 1324 SFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD 1368 SFQET ++LT A++ G+ D L GLKENVI+GRLIP GTG + +D Sbjct: 1336 SFQETQKILTRASIEGRVDPLMGLKENVIIGRLIPCGTGARHLRD 1380 >UniRef50_Q3ATP4 DNA-directed RNA polymerase subunit beta' n=12 Tax=Chlorobiaceae RepID=RPOC_CHLCH Length = 1502 Score = 1271 bits (3290), Expect = 0.0, Method: Compositional matrix adjust. Identities = 685/1477 (46%), Positives = 951/1477 (64%), Gaps = 158/1477 (10%) Query: 16 EFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKY 75 +F IK ++ASP+ I + S GEV KPETINYRTFKPERDGL C +IFGP KD+EC CGKY Sbjct: 13 DFSRIKFSIASPESILAHSRGEVLKPETINYRTFKPERDGLMCEKIFGPTKDWECYCGKY 72 Query: 76 KRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDI 135 KR++++G+IC++CGVEVT VRRERMGHI LA P H WF +S+PS+IG LLD+ +++ Sbjct: 73 KRVRYKGIICDRCGVEVTTKSVRRERMGHISLAVPVVHTWFFRSVPSKIGALLDLSTKEL 132 Query: 136 ERVLYFESYVVIEGGMTNLERQQI-----LTEEQYLDALEEFGD----------EFDAKM 180 ER++Y+E YVVI G E+Q I LTEEQY + E+ D +F AKM Sbjct: 133 ERIIYYEVYVVINPGEPG-EKQGIKKLDRLTEEQYFQIITEYEDNQDLDDHDPNKFVAKM 191 Query: 181 GAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQS---------- 230 G EAI LLK++DL++ LR L E+NSE KR KR+K++E+F +S Sbjct: 192 GGEAIHMLLKNIDLDETAVHLRTVLRESNSEQKRTDALKRLKVVESFRKSYEPHKKSRKK 251 Query: 231 -----------------GNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVI 273 GNKPE+M++ V+PV+PP+LRPLVPL+GGRFATSDLNDLYRRVI Sbjct: 252 PNALFAEDDMPEPYVYEGNKPEYMVMEVIPVIPPELRPLVPLEGGRFATSDLNDLYRRVI 311 Query: 274 NRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAI-TGSNKRPLKSLADMIK 332 RNNRLK+L+D+ AP++I+RNEKRMLQEAVDAL DN R+ A+ TG + RPLKSL+D +K Sbjct: 312 IRNNRLKKLIDIRAPEVILRNEKRMLQEAVDALFDNSRKANAVKTGESNRPLKSLSDALK 371 Query: 333 GKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLAT 392 GKQGRFRQNLLGKRVDYSGRSVI VGP L+LH+CGLPK MA+ELF+PF+ +L RG+A Sbjct: 372 GKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHECGLPKSMAIELFQPFVIRRLVDRGIAK 431 Query: 393 TIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPL 452 ++K+AKK+++R++ VVWD+L++VI PV+LNRAPTLHRLGIQAF+P L+EGKAIQ+HPL Sbjct: 432 SVKSAKKLIDRKDPVVWDVLEKVIDGRPVMLNRAPTLHRLGIQAFQPHLVEGKAIQIHPL 491 Query: 453 VCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYY 512 VC A+NADFDGDQMAVH+PL+ EAQLEA LM+S +N++ P +G+P+ VPSQD+VLG+YY Sbjct: 492 VCTAFNADFDGDQMAVHIPLSQEAQLEASLLMLSAHNLILPQSGKPVTVPSQDMVLGMYY 551 Query: 513 MTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARV-------------KVRITEYEKDA 559 +T+ GEG + +E Y L LHA++ +R+ E + Sbjct: 552 LTKSRGGEMGEGRIFYSAEEVRIAYNEQLVGLHAQIFMRYDGQVDQKFDAIRVMETFVEP 611 Query: 560 NGELVA--KTSLKD-----TTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRIL 612 E A + L + TTVGR I VP+ + + +N+ + KK +++ + Sbjct: 612 TSEKAAWLRKQLDEKRMVLTTVGRVIFNQHVPESIGF--INRVIDKKVAKELIGRLSSEV 669 Query: 613 GLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGL 672 G T F D I GF YA + G SVG+ D ++PE K + I A+ + ++ +++ G Sbjct: 670 GNVETAKFLDNIKEVGFHYAMKGGLSVGLSDAIVPETKAKHIKNAQRDSTKVVKEYNRGT 729 Query: 673 VTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARG 732 +T ERYN+++D+W ++ V++ L+ +R+G FN +YMM DSGARG Sbjct: 730 LTDNERYNQIVDVWQKTSNIVAEESYQKLKR----DREG-------FNPLYMMLDSGARG 778 Query: 733 SAAQIRQLAGMRGLMAKPD-------GSIIETPITANFREGLNVLQYFISTHGARKGLAD 785 S Q+RQL GMRGL+A+P G IIE PI +N +EGL VL+YFISTHGARKGL+D Sbjct: 779 SREQVRQLTGMRGLIARPQKSMSGQPGEIIENPIISNLKEGLTVLEYFISTHGARKGLSD 838 Query: 786 TALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIE---GGDVKEPLRDRVLGR 842 T+LKTA++GYLTRRL DVAQD++VT DDCGT G+ + IE G +K R+++ GR Sbjct: 839 TSLKTADAGYLTRRLHDVAQDVIVTIDDCGTTRGLYVHRNIEEETSGQIK--FREKIKGR 896 Query: 843 VTAEDVLKPGTADILVPRNTLLHEQWCDLLEENS-VDAVKVRSVVSCDTDFGVCAHCYGR 901 V A D++ T ++LV ++ E+ D ++E + V+ ++RSV++C++ G+C+ CYG Sbjct: 897 VAARDIVDTVTGNVLVQAGEIITEELADSIQETAGVEEAEIRSVLTCESKVGICSKCYGT 956 Query: 902 DLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLS 961 +L+ ++ GEA+GVIAAQSIGEPGTQLT+RTFH GGAA +E+ + G ++ Sbjct: 957 NLSVHQLVEIGEAVGVIAAQSIGEPGTQLTLRTFHQGGAAQGGISETETKAFCDGQVQFE 1016 Query: 962 NVKSV----VNSSG----KLVITSRNTELKLID-EFGRTKESYKVPYGAVLAKGDGEQVA 1012 +VK+V +N G + ++ +N ++ +ID E G+ + Y +P+GA LA DG V Sbjct: 1017 DVKTVAHTAMNEDGMEDVRTIVIQKNGKINIIDSESGKLLKRYMLPHGAHLACEDGVLVK 1076 Query: 1013 GGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGK 1072 + + +P++ +I E+ G ++F D+ G T + D TG S +++ + + Sbjct: 1077 KDQVLFRSEPNSTQIIAELPGTIKFADIEKGVTYKEEVDPQTGFSQHTIINWRTKLRATE 1136 Query: 1073 DLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQE---SG 1129 P L I+D G ++ Y +P K+ + +EDG ++ GD LA++P+ G Sbjct: 1137 TREPRLLILDENG--------EVRKTYPVPIKSNLYVEDGQKVLPGDILAKVPRNLDRVG 1188 Query: 1130 GTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDP-YEE 1188 G DIT GLP+V +LFEAR P +PAI++EI G VSFG + + + + + G + Y Sbjct: 1189 G--DITAGLPKVTELFEARIPTDPAIVSEIDGYVSFGAQRRSSKEIKVKNDFGEEKVYYV 1246 Query: 1189 MIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQ-GVK 1247 + K N EG+ V+ GD ++DG +P DILR++G +AV +Y+VNE+Q VY++ GV+ Sbjct: 1247 QVGKHVLAN--EGDEVKAGDPLTDGAVSPQDILRIQGPNAVQQYLVNEIQKVYQINAGVE 1304 Query: 1248 INDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYS-----------RVKIA-------- 1288 INDKH+EVIVRQML+K I G +D L G+ ++ S +V+I+ Sbjct: 1305 INDKHLEVIVRQMLQKVRIEEPGDTDLLPGDLIDRSAFIEANRAISEKVRISERGDAPAR 1364 Query: 1289 ---------------NRELEANGK--------VGATYSRDLLGITKASLATESFISAASF 1325 NREL N K + AT LLGIT A+L TES ISAASF Sbjct: 1365 IQENQLHKLRDITKLNRELRKNSKKMVAYEPALQATSHPVLLGITSAALQTESVISAASF 1424 Query: 1326 QETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362 QETT+VLT+AAVAGK D L GLKENVIVG+LIPAGTG Sbjct: 1425 QETTKVLTDAAVAGKVDYLVGLKENVIVGKLIPAGTG 1461 >UniRef50_B1GZ76 DNA-directed RNA polymerase subunit beta' n=2 Tax=Bacteria RepID=RPOC_UNCTG Length = 1593 Score = 1181 bits (3054), Expect = 0.0, Method: Compositional matrix adjust. Identities = 616/1248 (49%), Positives = 841/1248 (67%), Gaps = 63/1248 (5%) Query: 159 ILTEEQYLDALEE-FGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKL 217 +L EE ++ ++ FGD +GAEA+++LL+ ++L+ E + + E+ +T S+ +R +L Sbjct: 347 VLLEESDINNIQNGFGDSLKVNIGAEAVRSLLEEINLDDEMKNIYAEIKKTKSDAERARL 406 Query: 218 TKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNN 277 ++++++E F+ S +PEWMILTVLPV+PPDLRPLV LDGGRFATSDLNDLYRR+INRNN Sbjct: 407 LRKLRVVEGFLNSQTRPEWMILTVLPVIPPDLRPLVALDGGRFATSDLNDLYRRIINRNN 466 Query: 278 RLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGR 337 RL+ + L AP +++ NEKR+LQEAVDAL+DN R R +TG+ R LKSL+D +KGK+GR Sbjct: 467 RLRHIEQLKAPIVMINNEKRLLQEAVDALIDNDSRMRPVTGAGNRILKSLSDTLKGKRGR 526 Query: 338 FRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAA 397 FRQNLLGKRVDYSGRSVI VGP LRL+QCG+PK+MALELFKPFI +L ++ T+++A Sbjct: 527 FRQNLLGKRVDYSGRSVIVVGPNLRLNQCGIPKEMALELFKPFIVKEL-IKQENITLRSA 585 Query: 398 KKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAY 457 K+M+ER + VW+IL++V + HPVLLNRAPTLHRLGIQAFEPVL+EGK+IQLHPL C+A+ Sbjct: 586 KRMLERGDLKVWNILEKVTQSHPVLLNRAPTLHRLGIQAFEPVLVEGKSIQLHPLTCSAF 645 Query: 458 NADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDC 517 NADFDGDQMAVH+P++LEAQLEAR LMM+T NILSPA+G PI VPSQD+VLG Y+T++ Sbjct: 646 NADFDGDQMAVHLPISLEAQLEARVLMMATRNILSPASGRPIAVPSQDMVLGNCYLTKEK 705 Query: 518 VNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDAN----GELVAKTSLKD-- 571 GEG V + EA Y++ L AR+KV +D N E T K+ Sbjct: 706 YGVVGEGKVFSSVSEAISAYQAEKVDLQARIKVAGITSIRDKNLNNDDEQPDVTKWKNCK 765 Query: 572 ----------TTVGRAILWMIVPK------GLPYSIVNQALGKKAISKMLNTCYRILGLK 615 TTVGR I +PK L Y N+++ KK + +++ CY+ LG Sbjct: 766 SEDDTEIINYTTVGRIIFNEQLPKNDDGSYALEYQ--NKSMTKKELVALVDRCYKELGQF 823 Query: 616 PTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTA 675 T + D+I G+ YA +G S+ ID+M +P +K +++ EA+ +++EI++Q + GL+T Sbjct: 824 KTTVLLDEIKRIGYKYATLAGISISIDEMKVPTEKEKMVREAKTKISEIEKQAKLGLITE 883 Query: 676 GERYNKVIDIWAAANDRVSKAMMDNL-QTETVINRDGQEEKQVSFNSIYMMADSGARGSA 734 ERYN++IDIW D +S M D + + ET + GQ FNSI+MMADSG+RGS Sbjct: 884 SERYNRIIDIWTRVTDEISDIMFDEMRKEETKAYKPGQNR----FNSIFMMADSGSRGSR 939 Query: 735 AQIRQLAGMRGLMAKPD-------GSIIETPITANFREGLNVLQYFISTHGARKGLADTA 787 Q+RQLAGMRGLMAKP G IIETPI +NFREGL VL+YFISTHG RKGLADTA Sbjct: 940 QQVRQLAGMRGLMAKPQKKLTGGIGEIIETPIISNFREGLTVLEYFISTHGGRKGLADTA 999 Query: 788 LKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAED 847 LKTA +GYLTRRLVDVA D+VV E+DCGT G+ + + G ++ E + +RV+GR ++ Sbjct: 1000 LKTAEAGYLTRRLVDVAHDVVVREEDCGTVNGVFIGTLRCGDEIIEKIDERVVGRTALDN 1059 Query: 848 VLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGH 907 V+ D+++ R L+ + + L E +D + +RSV++C++ GVCA CYG + A G Sbjct: 1060 VVDIVHDDLIIKRGELITPKKAEKLVEAGIDKIGIRSVLTCESGHGVCAKCYGVNPATGE 1119 Query: 908 IINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVV 967 + GEA+G++AAQSIGEPGTQLT+RTFHIGGAASR S + +N G++ N+K++ Sbjct: 1120 QVEMGEAVGILAAQSIGEPGTQLTLRTFHIGGAASRVVQRSEVYAENNGTVNYYNLKTIQ 1179 Query: 968 NSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQV-------AGGET---V 1017 N G+ ++ SRN EL + K+ Y++PYGAV+ DG+ V G + + Sbjct: 1180 NKDGETIVLSRNAELVYTEYPVYRKQIYQIPYGAVIKIYDGQTVEIRVNPITGMKKDILI 1239 Query: 1018 ANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPA 1077 A WDPH+ P+I+E G V F D+ DG T+ R+ ++TG V+++ + D R Sbjct: 1240 AKWDPHSKPIISEFDGTVNFVDVKDGVTLQREKSKITGQIERVIIEHSS------DRRSP 1293 Query: 1078 LKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGG 1137 +V V+ +Y LP + + D ++ SGD LA+IPQE TKDITGG Sbjct: 1294 RIVVKKDDGSVV--------EYPLPVDTTLVVRDKDRVKSGDILAKIPQEISRTKDITGG 1345 Query: 1138 LPRVADLFEARRPKEPAILAEISGIVSF-GKETKGKRRLVITPVDGSDPYEEMIPKWRQL 1196 LPRVA+LFE RRP+ A+++EI GIV G KG ++ + + ++ R L Sbjct: 1346 LPRVAELFEGRRPRNVAVVSEIDGIVHLVGPTVKGNVKVEVENPETKMKKSYLVRAGRHL 1405 Query: 1197 NVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVI 1256 V+EG+RV+ G+ +SDG PHDIL+++G V Y+VNE+Q VYRLQGV INDKHIE+I Sbjct: 1406 VVYEGDRVKEGEALSDGAINPHDILKVKGPKEVQEYLVNEIQQVYRLQGVSINDKHIEII 1465 Query: 1257 VRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLAT 1316 VRQML I ++G S +L GE V + +I + ++ LLGITKASL++ Sbjct: 1466 VRQMLSNVRITDSGDSHYLNGEIVSRYKYEIDRKAIKGKKGKAPIAHSILLGITKASLSS 1525 Query: 1317 ESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 +SFISAASFQETTR+LTEAAV+G+ D L+GLKENV +GRLIPAGTG A Sbjct: 1526 DSFISAASFQETTRILTEAAVSGQVDYLKGLKENVSIGRLIPAGTGLA 1573 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 101/203 (49%), Positives = 144/203 (70%), Gaps = 2/203 (0%) Query: 17 FDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYK 76 FDA+++++ASPD I++WS+GEVKKPETINYRTFKPERDGLFC RIFGP KD+EC CGKYK Sbjct: 21 FDAVRVSVASPDQIKTWSYGEVKKPETINYRTFKPERDGLFCNRIFGPTKDWECHCGKYK 80 Query: 77 RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIE 136 +K++G IC++CGVEVT++KVRRER GHI LA P AH+WFLK PSR+G+LL+M + D+E Sbjct: 81 YIKYKGTICDRCGVEVTESKVRRERFGHINLAVPVAHLWFLKKPPSRVGILLNMKISDLE 140 Query: 137 RVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQ 196 +V+Y+ Y+V+ G + + + L E+F + F + ++ K++ Sbjct: 141 KVIYYAKYIVM-GDLKDRSGISFFARKGMLMGGEDF-NLFKYGINNPIVKEEFKNIFDGI 198 Query: 197 ECEQLREELNETNSETKRKKLTK 219 CE+++ + N T + + K L K Sbjct: 199 VCEEIKLDSNLTKALKQLKVLVK 221 >UniRef50_A5D5I3 DNA-directed RNA polymerase subunit beta' n=11 Tax=Clostridia RepID=RPOC_PELTS Length = 1170 Score = 1170 bits (3027), Expect = 0.0, Method: Compositional matrix adjust. Identities = 586/1023 (57%), Positives = 746/1023 (72%), Gaps = 38/1023 (3%) Query: 17 FDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYK 76 FD I+I LASPD IR+WS GEVKKPETINYRT KPERDGLFC RIFGP +D+EC CGKYK Sbjct: 7 FDRIRIGLASPDQIRAWSSGEVKKPETINYRTLKPERDGLFCERIFGPTRDWECHCGKYK 66 Query: 77 RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIE 136 R++++GV+C++CGVEVT++KVRRER+GHIELA+P +HIW+ K +PSR+GLLLDM R +E Sbjct: 67 RVRYKGVVCDRCGVEVTRSKVRRERLGHIELAAPVSHIWYFKGIPSRMGLLLDMSPRALE 126 Query: 137 RVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQ 196 +VLYF SY+V + G T L ++Q+LTE +Y D E +G+ F A MGAEAI+ LL+ ++LE+ Sbjct: 127 KVLYFVSYIVTDPGDTGLIKKQLLTETEYRDCRERYGNAFKASMGAEAIKKLLEEINLEE 186 Query: 197 ECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLD 256 +LR+EL E + K + + +R++++EAF +SGN+PEWMIL V+PV+ P+LRP+V LD Sbjct: 187 LARELRQELKEVTGQRKIRAI-RRLEVVEAFRKSGNRPEWMILEVIPVISPELRPMVQLD 245 Query: 257 GGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAI 316 GGRFATSDLNDLYRRVINRNNRLKRLLDL APDIIVRNEKRMLQEAVDAL+DNGRRGR + Sbjct: 246 GGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEAVDALIDNGRRGRPV 305 Query: 317 TGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALEL 376 TG RPLKSL+DM+KGKQGRFRQNLLGKRVDYSGRSVI VGP L LHQCGLPK+MALEL Sbjct: 306 TGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELHLHQCGLPKEMALEL 365 Query: 377 FKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQA 436 FKPF+ +L G A IK+AK+MVER VW++L+EVI+EHPVLLNRAPTLHRLGIQA Sbjct: 366 FKPFVMKRLVNDGYAHNIKSAKRMVERVRPEVWEVLEEVIKEHPVLLNRAPTLHRLGIQA 425 Query: 437 FEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANG 496 FEPVL+EG+AIQ+HP+VC AYNADFDGDQMAVHVPL+ EAQ EAR LM+S+NNIL+P +G Sbjct: 426 FEPVLVEGRAIQIHPMVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLSSNNILNPKDG 485 Query: 497 EPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYE 556 P+ +P+QD+VLG+YY+T + GEG P+EA Y + SLHA VKVR+ Sbjct: 486 RPVAIPTQDMVLGIYYLTVEKQGVPGEGKAFKDPEEAVMAYYNNAVSLHAAVKVRMP--- 542 Query: 557 KDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKP 616 G + +TTVGR I ++P+ L Y NQ + KK +SK+++ CYR LG Sbjct: 543 --GMGRI-------ETTVGRIIFNEVIPRELGY--YNQVIDKKVLSKIVDDCYRKLGFSA 591 Query: 617 TVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAG 676 T D I GF +A R+G ++GI D+ IP +K EI+ EAE +V ++++Q++ GL+T Sbjct: 592 TSKLLDGIKKLGFTFATRAGVTIGIQDITIPARKKEILKEAEQQVEKVEQQYRRGLITEE 651 Query: 677 ERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQ 736 ERY KVI IW A V+ A+++ L FN +YMMA+SGARG+ Q Sbjct: 652 ERYRKVIGIWNDATKEVTDALIETLD---------------KFNPVYMMANSGARGNIQQ 696 Query: 737 IRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYL 796 IRQLAGMRGLMA P G II+ PI ANFREGL VL+YFISTHGARKGLADTAL+TA+SGYL Sbjct: 697 IRQLAGMRGLMADPSGRIIDLPIKANFREGLTVLEYFISTHGARKGLADTALRTADSGYL 756 Query: 797 TRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADI 856 TRRLVDVAQD++V E DCGT +GI +T + +G +V E L DR++GRV EDV P T +I Sbjct: 757 TRRLVDVAQDVIVREVDCGTGQGIEVTEIKDGNEVIEKLEDRIIGRVALEDVKHPETGEI 816 Query: 857 LVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIG 916 L + E + + VK+RSV++C T +GVC CYGR+LA G ++ GEA+G Sbjct: 817 LAFAGEEITESEAAKIVAAGIKKVKIRSVLTCRTRYGVCIKCYGRNLATGRQVDIGEAVG 876 Query: 917 VIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLV-- 974 +IAAQSIGEPGTQLTMRTFH GG A + +V+ + ++++ + V Sbjct: 877 IIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVEELFEARRPKGQAIIAEADGTVEV 936 Query: 975 --ITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGE--TVANWDPHTMPVITE 1030 + R E+++ E G TK Y+VPYGA L DG++V G+ T + +PH + I Sbjct: 937 REVKGRR-EIEVTAEDG-TKSVYQVPYGARLKVRDGDRVYAGDELTEGSVNPHDLLKIKG 994 Query: 1031 VSG 1033 V G Sbjct: 995 VQG 997 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 126/236 (53%), Positives = 166/236 (70%), Gaps = 2/236 (0%) Query: 1133 DITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPK 1192 DIT GLPRV +LFEARRPK AI+AE G V +E KG+R + +T DG+ + +P Sbjct: 904 DITQGLPRVEELFEARRPKGQAIIAEADGTVEV-REVKGRREIEVTAEDGTKSVYQ-VPY 961 Query: 1193 WRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKH 1252 +L V +G+RV GD +++G PHD+L+++GV V Y++ EVQ VYRLQGV INDKH Sbjct: 962 GARLKVRDGDRVYAGDELTEGSVNPHDLLKIKGVQGVQIYLLQEVQRVYRLQGVDINDKH 1021 Query: 1253 IEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKA 1312 IEV++RQMLRK + G +D L G ++ + NR ++ G AT LLGITKA Sbjct: 1022 IEVMIRQMLRKVKVDEPGDTDLLPGGLIDIFEFEDENRRIKNLGGEPATAKPVLLGITKA 1081 Query: 1313 SLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD 1368 SLAT+SF+SAASFQETTRVLTEAA+ GK D L GLKENVI+G+L+PAGTG + +++ Sbjct: 1082 SLATDSFLSAASFQETTRVLTEAAIKGKLDLLLGLKENVIIGKLVPAGTGMSRYRN 1137 >UniRef50_B2V7L9 DNA-directed RNA polymerase subunit beta' n=11 Tax=Bacteria RepID=RPOC_SULSY Length = 1579 Score = 1170 bits (3026), Expect = 0.0, Method: Compositional matrix adjust. Identities = 632/1315 (48%), Positives = 867/1315 (65%), Gaps = 110/1315 (8%) Query: 133 RDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSM 192 ++I+ ++ Y+VI+ ++L+ QI+ E +D+L E A G EA++ L K+ Sbjct: 271 KEIDVIISQGYYIVIDPASSDLKFGQIINPEN-VDSLPE---GVIALTGVEALEKLYKAY 326 Query: 193 D--------LEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPV 244 E E +R + + ++ + KK+ +R++L+E F++S NKPEWMIL VLPV Sbjct: 327 REKVKEIPIFEVIKESVRNVILKEGTDARLKKIIRRLRLVEGFIESENKPEWMILEVLPV 386 Query: 245 LPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVD 304 +PPDLRPL+ LDGGRFA+SDLNDLYRRVINRNNRLKRL+DL AP+II+RNEKRMLQEAVD Sbjct: 387 IPPDLRPLIALDGGRFASSDLNDLYRRVINRNNRLKRLIDLDAPEIIIRNEKRMLQEAVD 446 Query: 305 ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH 364 AL+DNGRRGR +T N RPLKSL+D ++GK+GRFRQNLLGKRVDYSGRSVI VGP L++H Sbjct: 447 ALIDNGRRGRMVT-QNNRPLKSLSDSLRGKEGRFRQNLLGKRVDYSGRSVIVVGPELQMH 505 Query: 365 QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN 424 +CGLPK+MALELFKPFIY +LE +G AT+IK+AKK+VE + V++ L+EV+++HPVLLN Sbjct: 506 ECGLPKQMALELFKPFIYRRLEEKGYATSIKSAKKLVEEKVPEVYECLEEVVKQHPVLLN 565 Query: 425 RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 484 RAPTLHR+ +QAFEP L+EGKAI+LHPLVC +NADFDGDQMAVHVPL++EAQLE+ LM Sbjct: 566 RAPTLHRMSVQAFEPKLVEGKAIKLHPLVCPPFNADFDGDQMAVHVPLSVEAQLESYILM 625 Query: 485 MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL 544 +ST NILSPA+G+P+ +PSQD++LG++YMT++ NAKGEG + P+EA Y G L Sbjct: 626 LSTQNILSPAHGKPVTMPSQDIILGVHYMTQELPNAKGEGKIFGSPEEAVTAYELGTIDL 685 Query: 545 HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM 604 A++KVRI NG++V +TT GR I I+P+G Y VN+ L KK ISK+ Sbjct: 686 LAKIKVRI-------NGKIV------ETTAGRIIFNQILPEG--YKFVNEVLDKKKISKL 730 Query: 605 LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEI 664 ++ Y G + D+I GF +A ++ S+ + D+V+P+KK +I+ +A E + Sbjct: 731 ISDIYEKYGNEIAAQTLDKIKEIGFRFATKAAVSISVADLVVPKKKAKILEKAIKEAETV 790 Query: 665 QEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQ-TETVINRDGQEEKQVSFNSIY 723 +Q+ G++T GER+NK+IDIW+ A + V+K M + ++ +E V N ++ FN +Y Sbjct: 791 WKQYVDGIITKGERHNKIIDIWSQATNEVAKEMFNEIEKSERVEN---GKKYPGYFNPVY 847 Query: 724 MMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGL 783 MMA SGARGS QIRQLAGMRGLMAK G IETPI +NFREGL+V++YFIST+GARKGL Sbjct: 848 MMASSGARGSRDQIRQLAGMRGLMAKHSGEFIETPIMSNFREGLSVVEYFISTYGARKGL 907 Query: 784 ADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRV 843 ADTALKTA +GYLTRRL DVAQD+++T +DCGT +GI ++ +IE G++ P +DR++GR Sbjct: 908 ADTALKTAVAGYLTRRLADVAQDVIITGEDCGTLKGITVSSIIESGEIVVPFKDRIIGRY 967 Query: 844 TAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDL 903 TAEDV P T ++L+ N + E+ D E+ ++ VK+RSV++C+ GVCA CYGRDL Sbjct: 968 TAEDVYDPYTGELLISANEEITEEVVDKFEKAGIEKVKIRSVLTCEMPHGVCAKCYGRDL 1027 Query: 904 ARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNV 963 A+ +++ GEA+G+IAAQSIGEPGTQLTMRTFHIGGAA+ ++ + + G++KL NV Sbjct: 1028 AQRKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHIGGAATAKEVQTQHKATHDGTVKLQNV 1087 Query: 964 KSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPH 1023 K VV+ G+ +I +R +K++D+ G+T E + PYGAVL DG++V G +A W+P Sbjct: 1088 KFVVDKKGRKLIINREGSIKILDKEGKTIERFPAPYGAVLYVEDGQEVKEGTILAEWEPF 1147 Query: 1024 TMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDA 1083 + P+I E G V D+I T+ + D +TG + + + R + P L I Sbjct: 1148 SDPIIAEKGGEVELRDVILDVTLKEERDNITGKTIYTI--TFLRPKDAQLHTPRLVIKGE 1205 Query: 1084 QGND----------VLIPGTDMPAQY---FLPGKA--------IVQLEDGVQISSGDTLA 1122 GN+ +LIP ++ + F +A +Q++ G ++S GD +A Sbjct: 1206 DGNEYVYDLPVNTILLIPKENLEEVWDKCFACSEAEKTDIHHKYLQVKKGFKVSEGDVVA 1265 Query: 1123 RIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETK---------GKR 1173 +IP+E +DI GGLPRV +L EAR PK AI+ EI GIV ++ K GK Sbjct: 1266 KIPKEKAKVRDIVGGLPRVEELLEAREPKNKAIITEIDGIVKIYEDAKEITLINPKEGKT 1325 Query: 1174 RLVITP--------------------VDGS-----DPYEEMIPKWRQLNVFEGE------ 1202 P DGS D + + ++ VF E Sbjct: 1326 ETYKVPDTTFVIVKNGSFVKAGQSLVDDGSIVAEFDGMVRLKSEGSRIVVFNKETGQQKD 1385 Query: 1203 -RVERGDVI--------------SDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVK 1247 +V +G I +DG PHDILR+ G+ + ++V E Q VYRLQGV+ Sbjct: 1386 YKVPKGKFIIVKDNSVVKAGDPLTDGTPNPHDILRVMGIEELAAFLVKEAQIVYRLQGVE 1445 Query: 1248 INDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLL 1307 INDKH EVI+RQ+LRK IV+ G S FL E V+ ++ ++ + G L+ Sbjct: 1446 INDKHFEVIIRQILRKVKIVDPGDSRFLLNEIVDKLDLEEEINKVISEGGRPPKAEPVLV 1505 Query: 1308 GITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362 GITKA+L T S+ISAASFQETTRVL +AAV GK D L+GLKENVI+G +IPAGTG Sbjct: 1506 GITKAALTTRSWISAASFQETTRVLADAAVEGKVDPLKGLKENVIIGGIIPAGTG 1560 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 116/221 (52%), Positives = 161/221 (72%), Gaps = 23/221 (10%) Query: 9 KAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDY 68 K + +T FDAI+++LASP++IRSWS GEVKKPET+NYRT KPE+DGLF ARIFGP+KDY Sbjct: 4 KERKETVRFDAIRLSLASPEIIRSWSHGEVKKPETLNYRTLKPEKDGLFDARIFGPIKDY 63 Query: 69 ECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLL 128 ECLCGKYK+ K+ G IC++CGVEVT++ VRRER GHIELASP HIW+LKS PS+IG LL Sbjct: 64 ECLCGKYKKRKYEGTICDRCGVEVTRSDVRRERFGHIELASPVVHIWYLKSTPSKIGSLL 123 Query: 129 DMPLRDIERVLYFESYVVI---------------------EGGMTNLERQQILTEEQYLD 167 D+ RDIERV+YFESY+VI EGG+T + +++E+++ + Sbjct: 124 DLTSRDIERVVYFESYLVIEHPTEEEEEAFEKDPKSLPLMEGGLTKYVKLHVVSEDEFRE 183 Query: 168 ALEEF--GDEFDAKMGAEAIQALLKSMDLEQECEQLREELN 206 E+ ++++ MGAE ++ +L +DLE ++L+++L+ Sbjct: 184 REYEYSNAEKYEYGMGAEKVKDVLARIDLEILAKRLKKDLH 224 >UniRef50_C9RQN4 DNA-directed RNA polymerase n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQN4_FIBSS Length = 1478 Score = 1169 bits (3023), Expect = 0.0, Method: Compositional matrix adjust. Identities = 613/1196 (51%), Positives = 808/1196 (67%), Gaps = 74/1196 (6%) Query: 231 GNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDI 290 N+P WMIL VLPV+PPDLRPLVPL+GGRFATSDLN+LYRRVINRNNRLK+L+D+ AP++ Sbjct: 285 ANQPSWMILDVLPVIPPDLRPLVPLEGGRFATSDLNELYRRVINRNNRLKKLIDIRAPNV 344 Query: 291 IVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYS 350 I+ NEKRMLQEAVD L D+GRR A GS RPLKSLA+++KGKQGRFR NLLGKRVDYS Sbjct: 345 ILCNEKRMLQEAVDQLFDSGRR-TARAGS-ARPLKSLAELLKGKQGRFRMNLLGKRVDYS 402 Query: 351 GRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWD 410 GRSVI VGP LR+HQCGLPK+MALEL+KPFI +LE G+ T+K+AKK V+ E VWD Sbjct: 403 GRSVIVVGPELRMHQCGLPKRMALELYKPFIIQRLEEEGIVYTLKSAKKYVDAERPEVWD 462 Query: 411 ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHV 470 IL+++I +HPV+LNRAPTLHRLGIQAF P LIEG AI+LHPLVC A+NADFDGDQMA H+ Sbjct: 463 ILEQIIEDHPVMLNRAPTLHRLGIQAFYPKLIEGNAIRLHPLVCTAFNADFDGDQMACHL 522 Query: 471 PLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGP 530 PL+ E QLE R LM+S+NNIL PA+G+PI VP QD+VLGLYY+T+ N KGEGM P Sbjct: 523 PLSFETQLECRVLMLSSNNILHPASGQPIAVPGQDIVLGLYYLTKPRPNRKGEGMHFYDP 582 Query: 531 KEAERLYRSGLASLHARV--------KVRITEYEKDAN------------------GELV 564 EA R Y + + L+A V K+ + EKD GE + Sbjct: 583 AEAVRAYENDVVDLNANVYLKLPAGRKIYMGALEKDCTCIREMADDNGNLEVQVKAGEKI 642 Query: 565 AKTSLKD-----TTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVI 619 +LK+ TTVGR I VP L Y+ N+ GKK I+K ++ YR G + TV Sbjct: 643 KFLTLKEDNVIKTTVGRIIFNEFVPNALGYA--NETFGKKVIAKSIDDLYRRTGNRVTVD 700 Query: 620 FADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERY 679 + D + G+ +A R+G+SV I +MVIP++K E++ +A +V++I+ ++ G++T GERY Sbjct: 701 YLDDLKANGYKWATRAGSSVAIAEMVIPKEKQEMLDKAAEQVSKIRALYEDGVITDGERY 760 Query: 680 NKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQ 739 N+ ID+W+ V+ D L +RDG FN +YMMADSGARGS QI+Q Sbjct: 761 NQTIDVWSKTTSDVAAKQWDLLSH----DRDG-------FNPVYMMADSGARGSREQIKQ 809 Query: 740 LAGMRGLMAKP-----DGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSG 794 L+GMRGLM KP +IE PI + FREGLNV++YFIS+HGARKGLADTALKTA++G Sbjct: 810 LSGMRGLMQKPIKQLGGQEVIENPIKSCFREGLNVMEYFISSHGARKGLADTALKTADAG 869 Query: 795 YLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTA 854 YLTRRLVDV QDLV+TE DCGT GI ++ +G D PL +R+LGR +D+ P T Sbjct: 870 YLTRRLVDVGQDLVITEPDCGTTNGIEVSAFKDGDDTVIPLEERLLGRAPVDDIKHPVTG 929 Query: 855 DILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEA 914 +++V L+ E+ + ++ +K+RSV++CD+ GVCA CYGR LA G ++ GEA Sbjct: 930 EVIVKAGELVTERDLPKISATGLEHIKMRSVLTCDSKTGVCAKCYGRMLASGRPVDLGEA 989 Query: 915 IGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLV 974 +GV+AAQSIGEPGTQLT+RTFHIGGA+SR ES + G I+L V++ V+ G+ V Sbjct: 990 VGVLAAQSIGEPGTQLTLRTFHIGGASSRLTVESDKKATVDGHIELEQVET-VDHEGQKV 1048 Query: 975 ITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGF 1034 + SR EL + D G K Y++PYGA+L + V GE++ WDP+ P+IT VSG Sbjct: 1049 VVSRMGELVIFDTTGINKGRYQIPYGAILHVENNATVKKGESMFEWDPYNSPIITNVSGT 1108 Query: 1035 VRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTD 1094 + F+++I+ +T + DE+T + + +V+ +++ G LRP + I D +G V Sbjct: 1109 IAFSNLIENRTYRIERDEMTDVETWIVI--SDKQHGKNQLRPVIVINDDRGEKV------ 1160 Query: 1095 MPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPA 1154 + LP AI+ + G +++SG +A++P+ +G T+DITGGLPRVA+LFEAR PK A Sbjct: 1161 --GHFMLPDGAILAVHQGDRVTSGQVIAKLPRAAGKTRDITGGLPRVAELFEARVPKNKA 1218 Query: 1155 ILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGP 1214 +A + G+V +G E + + ++I +DG++ + ++P+ L V +G+RV G IS+G Sbjct: 1219 FIAPVDGLVKYGNEVRNNQEVIIQQMDGNE-VKVLVPRGIHLAVNDGDRVRAGQKISEGS 1277 Query: 1215 EAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDF 1274 PHDIL + G V R++VNE+Q VYRLQGV I DKHIE IVRQM+RK I + G S+F Sbjct: 1278 VDPHDILDVLGPEDVQRHLVNEIQAVYRLQGVAIADKHIECIVRQMMRKVRITDPGESEF 1337 Query: 1275 LEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTE 1334 L GE++ R++ N L A GK A Y LLGITKASLAT+SFISAASFQET ++LT Sbjct: 1338 LPGEEISKIRLRTENERLRALGKDEAKYQPMLLGITKASLATDSFISAASFQETQKILTR 1397 Query: 1335 AAVAGKRDELRGLKENVIVGRLIPAGTGYAYH----------QDRMRRRAAGEAPA 1380 A++ G D L GLKENVI+GRLIP GTG A H D M R APA Sbjct: 1398 ASIEGCVDPLMGLKENVIMGRLIPCGTG-ARHLRNVQVIDADADEMEERRVQSAPA 1452 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 123/221 (55%), Positives = 169/221 (76%), Gaps = 2/221 (0%) Query: 10 AQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYE 69 A+ TE+F I I LASPD+IR WS+GEV KPETINYR+FKPE+DGLFC +IFGPVK++E Sbjct: 2 AEEMTEQFGDISIHLASPDLIRYWSYGEVTKPETINYRSFKPEKDGLFCEKIFGPVKNWE 61 Query: 70 CLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLD 129 C CGK+KR++++GVIC++CGVEVT +KVRRERMGHIELA P H WF+++ P IG LL+ Sbjct: 62 CNCGKFKRIRYKGVICDRCGVEVTHSKVRRERMGHIELAIPLTHTWFVRNQPCVIGALLN 121 Query: 130 MPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALL 189 + +D++ ++Y+E YVVI+ G T+LE ++ E QY D + E G EF+AKMGA AI+ LL Sbjct: 122 LNTKDLDHIIYYEKYVVIDPGTTDLEPNSLIDEAQYQDLVAE-GREFEAKMGASAIKQLL 180 Query: 190 KSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQS 230 +DL + E+LR + + S+TK+ KR+K++EAF +S Sbjct: 181 DRVDLTKLSEELRLQAT-SKSKTKQDDAVKRLKVVEAFKKS 220 >UniRef50_A5N4P0 DNA-directed RNA polymerase subunit beta' n=5 Tax=Bacteria RepID=RPOC_CLOK5 Length = 1174 Score = 1145 bits (2962), Expect = 0.0, Method: Compositional matrix adjust. Identities = 558/1042 (53%), Positives = 758/1042 (72%), Gaps = 47/1042 (4%) Query: 17 FDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYK 76 FDA++I LAS + IR WS GEVKKPETINYRT KPERDGLFC RIFGP KD+EC CGKYK Sbjct: 7 FDALQIGLASTEKIREWSRGEVKKPETINYRTLKPERDGLFCERIFGPQKDWECHCGKYK 66 Query: 77 RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIE 136 R++++G++C++CGVEVT+ KVRRERMGHIELA+P +HIW+ K +PSR+GL+LDM R +E Sbjct: 67 RIRYKGIVCDRCGVEVTKAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDMSPRALE 126 Query: 137 RVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDE-FDAKMGAEAIQALLKSMDLE 195 +VLYF SYVV++ T L ++Q+LTE++Y +A++++G++ F A MGAE+++ LL+ +DLE Sbjct: 127 KVLYFASYVVLDPKETQLLKKQLLTEKEYREAVDKYGEQNFVASMGAESVKKLLEEIDLE 186 Query: 196 QECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPL 255 Q L+E+L + + K+ ++ +R++++E+F +SGN+PEWM++ V+PV+PPDLRP+V L Sbjct: 187 QLSLVLKEDLKNSTGQ-KKIRIIRRLEVVESFRKSGNRPEWMVIDVIPVIPPDLRPMVQL 245 Query: 256 DGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRA 315 DGGRFATSDLNDLYRRVINRNNRLK+LLDL APDIIVRNEKRMLQEAVDAL+DNGRRGR Sbjct: 246 DGGRFATSDLNDLYRRVINRNNRLKKLLDLGAPDIIVRNEKRMLQEAVDALIDNGRRGRP 305 Query: 316 ITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALE 375 +TG RPLKSL+DM+KGKQGRFRQNLLGKRVDYSGRSVI VGP L+++QCGLPK+MALE Sbjct: 306 VTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKMYQCGLPKEMALE 365 Query: 376 LFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQ 435 LFKPF+ KL RGLA IK+AK+MVER +A VWD+L+EVI +HPVLLNRAPTLHRLGIQ Sbjct: 366 LFKPFVMKKLVERGLAHNIKSAKRMVERVQAQVWDVLEEVISDHPVLLNRAPTLHRLGIQ 425 Query: 436 AFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPAN 495 AF+PVL+EG+AI+LHPL C AYNADFDGDQMAVHVPL++EAQ EAR LM++ +NIL P++ Sbjct: 426 AFQPVLVEGRAIKLHPLSCTAYNADFDGDQMAVHVPLSVEAQSEARFLMLAAHNILKPSD 485 Query: 496 GEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEY 555 G+P++VP+QD+VLG YY+T + AKGEG + P E Y+ ++A++KV++T Sbjct: 486 GKPVVVPTQDMVLGSYYLTVEREGAKGEGRYFSFPDEVIMAYQLKQIDINAKIKVKMT-- 543 Query: 556 EKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSI-----------VNQALGKKAISKM 604 K +G+ + + + D T G+ I VP+ L + ++ + KK + K+ Sbjct: 544 -KIIDGKYI--SGIIDATAGKIIFNECVPQDLGFIDRSKPGNEFKLEIDFLVAKKNLGKI 600 Query: 605 LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEI 664 +N CY G T I D+I G+ Y+ SG +V DM +PE K ++SE++A V +I Sbjct: 601 INKCYMKHGATKTSIMLDKIKARGYHYSTISGITVSTSDMEVPEAKKRLLSESDAAVDKI 660 Query: 665 QEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 724 ++ ++ G ++ ERY +VI+ W + V+ +M+NL FN I+M Sbjct: 661 EKMYRRGFISEDERYQRVIERWTKTTEDVADELMNNLD---------------KFNPIFM 705 Query: 725 MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA 784 MADSGARGS +QI+QLAGMRGLMA P G IIE PI A+FREGL+VL+YFISTHGARKG A Sbjct: 706 MADSGARGSKSQIKQLAGMRGLMANPSGKIIELPIRASFREGLDVLEYFISTHGARKGNA 765 Query: 785 DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT 844 DTALKTA+SGYLTRRLVDV+QD++V E+DCGT+EG ++ + EG +V E L +R+ GR + Sbjct: 766 DTALKTADSGYLTRRLVDVSQDVIVREEDCGTYEGYDVSEIKEGNEVIESLSERLTGRYS 825 Query: 845 AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA 904 AED++ P I+VP+N+ + + D +E + + VK+RSV +C + GVC+ CYG ++A Sbjct: 826 AEDIIDPNNHQIIVPKNSYMDSKLADRIEASGIKKVKIRSVFTCKSRHGVCSKCYGMNMA 885 Query: 905 RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQV-------KNKGS 957 I+ GE++G+IAAQSIGEPGTQLTMRTFH GG A + +V K KG Sbjct: 886 TAQKIDIGESVGIIAAQSIGEPGTQLTMRTFHTGGVAGSDITQGLPRVEELFEARKPKGL 945 Query: 958 IKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETV 1017 +S V V K+ T + + +I + G + +Y +P+G+ + +G+ ++ G+ V Sbjct: 946 AIVSEVSGTV----KMEETKKKRSVSVITDNGE-EVTYDIPFGSRIKVSNGDLISAGDEV 1000 Query: 1018 --ANWDPHTMPVITEVSGFVRF 1037 + +PH + I V G + Sbjct: 1001 TEGSVNPHDILRIKGVQGVKNY 1022 Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 122/235 (51%), Positives = 164/235 (69%), Gaps = 2/235 (0%) Query: 1133 DITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPK 1192 DIT GLPRV +LFEAR+PK AI++E+SG V +ETK KR + + +G + + IP Sbjct: 925 DITQGLPRVEELFEARKPKGLAIVSEVSGTVKM-EETKKKRSVSVITDNGEEVTYD-IPF 982 Query: 1193 WRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKH 1252 ++ V G+ + GD +++G PHDILR++GV V Y+++EVQ VYRLQGV INDKH Sbjct: 983 GSRIKVSNGDLISAGDEVTEGSVNPHDILRIKGVQGVKNYLLSEVQKVYRLQGVDINDKH 1042 Query: 1253 IEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKA 1312 +EV++RQM RK I +G ++ L G ++ + N +EA+G A LLGITKA Sbjct: 1043 LEVVIRQMTRKIKIEESGDTELLPGTMIDIFDFEEENARVEASGGSAAQGRVALLGITKA 1102 Query: 1313 SLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQ 1367 +LATESF+SAASFQETTRVLT+AA+ GK D L GLKENVI+G+LIPAGTG ++ Sbjct: 1103 ALATESFLSAASFQETTRVLTDAAIKGKIDPLLGLKENVIIGKLIPAGTGMTRYR 1157 >UniRef50_C0QQL7 DNA-directed RNA polymerase n=7 Tax=Bacteria RepID=C0QQL7_PERMH Length = 1586 Score = 1137 bits (2941), Expect = 0.0, Method: Compositional matrix adjust. Identities = 632/1378 (45%), Positives = 873/1378 (63%), Gaps = 124/1378 (8%) Query: 76 KRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDI 135 K +K V ++ G E T+ R + E+A A + F R G ++ ++I Sbjct: 221 KEMKSYAVGYDELGPEFKNTQERLYKKVISEIARRLAEVGF------RFGEVVPTD-KEI 273 Query: 136 ERVLYFESYVVIEGGMTNLERQQIL-TEEQYLDALEEFGDEFDAKMGAEAIQALLKS--- 191 + + E +VVI+ T L + Q++ EE E + F+ G A++ L + Sbjct: 274 DAIFTKEYFVVIDPKDTELLKGQLIHREEVERLREELGEEAFEVDSGPGALEKLYRDYRD 333 Query: 192 -------MDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPV 244 D+ +E +R+ + + +E K KKL +R++L+E F++SGN+PEWMIL V+PV Sbjct: 334 KNPDIPVFDIIKES--VRQTILKEVAEQKLKKLVRRLRLIEGFIKSGNRPEWMILDVIPV 391 Query: 245 LPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVD 304 +PPDLRPL+PLDGGRFATSDLNDLYRRVINRNNRLKRL++L AP+II+RNEKRMLQEAVD Sbjct: 392 IPPDLRPLIPLDGGRFATSDLNDLYRRVINRNNRLKRLIELDAPEIIIRNEKRMLQEAVD 451 Query: 305 ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH 364 L+DNGRRGR +T N RPLKSL+D ++GKQGRFRQNLLGKRVDYSGRSVI VGP L++H Sbjct: 452 TLIDNGRRGRIVT-QNNRPLKSLSDSLRGKQGRFRQNLLGKRVDYSGRSVIVVGPDLQMH 510 Query: 365 QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN 424 +CGLPK MALELFKPFIY +LE +G AT+IK AKKMVE + VW+ L+EV+++HPVLLN Sbjct: 511 ECGLPKIMALELFKPFIYRRLEEKGYATSIKNAKKMVEEKAPEVWECLEEVVKQHPVLLN 570 Query: 425 RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 484 RAPTLHR+ +QAFEP L+EGKAI+LHPLVC +NADFDGDQMAVHVPL++EAQ+E+ LM Sbjct: 571 RAPTLHRMSVQAFEPKLVEGKAIKLHPLVCPPFNADFDGDQMAVHVPLSVEAQIESYILM 630 Query: 485 MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL 544 +ST NILSPA+G+PI +PSQD++LG +YMT+ AKGEG EA Y G L Sbjct: 631 LSTQNILSPAHGKPITMPSQDIILGAHYMTQAIEGAKGEGKYFADEDEAILAYELGKVDL 690 Query: 545 HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM 604 A++KV+ +G++V +TTVGR I + P+G Y +N+ + KK ISK+ Sbjct: 691 LAKIKVK-------KDGKVV------ETTVGRLIFNKVFPEG--YRFINETVDKKKISKI 735 Query: 605 LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEI 664 ++ Y G + V D++ GF YAAR+G S+ IDD+V+P KK EI+ +AE E + Sbjct: 736 ISEIYDQFGNEIAVDTLDRLKALGFEYAARAGISIAIDDLVVPSKKWEIVRKAEKEAERV 795 Query: 665 QEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 724 +Q+ G++T GER+NKVIDIW+ + V+K M D ++ + + +E +FN IYM Sbjct: 796 WQQYVDGIITKGERHNKVIDIWSQTTNEVTKMMFDEIENSKRV--ENGKEYPGTFNPIYM 853 Query: 725 MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA 784 MA SGARG+ QIRQLAGMRGLMAK G IETPI +NFREGL V++YFIST+GARKGLA Sbjct: 854 MALSGARGNRDQIRQLAGMRGLMAKHSGEFIETPIRSNFREGLTVVEYFISTYGARKGLA 913 Query: 785 DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT 844 DTALKTA +GYLTRRLVDVAQD+V+T +DCGT G++++ VIEGG++ PL++R+LGR Sbjct: 914 DTALKTAVAGYLTRRLVDVAQDVVITNEDCGTLNGLVVSAVIEGGEIVVPLKERILGRYA 973 Query: 845 AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA 904 AED+ P T +++V + E+ +E ++ VK+RSV++C+ GVCA CYGRDL+ Sbjct: 974 AEDIYDPYTEELIVSAGEEIDEEKAQEIENAGIEEVKIRSVLTCEQKRGVCAKCYGRDLS 1033 Query: 905 RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVK 964 + +++ GEA+G+IAAQSIGEPGTQLTMRTFHIGGAA+ A ++ + +G +KL NVK Sbjct: 1034 QKKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHIGGAATAKAVQTKHEASVEGKVKLLNVK 1093 Query: 965 SVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT 1024 +V + GK+++ +R+ +K++DE G+ KE + VPYG VL DG+ V G+T+ WDP + Sbjct: 1094 TVTDKEGKVLVINRDGAIKIVDEEGKIKERFPVPYGGVLKVKDGQDVKPGDTLVEWDPFS 1153 Query: 1025 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSL---------VVLDSAERTAGGKDLR 1075 +P+I E SG + D+I T+ + D +TG + + VL + G D + Sbjct: 1154 IPIIAEKSGTLELRDIILDVTLREERDNITGKTIMDISFMRPKDAVLHTPRMIIKGDDGK 1213 Query: 1076 PALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLED------------GVQISSGDTLAR 1123 D N +L+ D + A + E G +++ GD +A+ Sbjct: 1214 EYA--YDLPVNTILMLSRDQLETKWDKCPACSEAEKADVYHNYLEVKAGFKVNEGDIIAK 1271 Query: 1124 IPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDG- 1182 IP+E+ +DI GGLPRV +L EAR PK AI++EI GIV ++ +V P+ G Sbjct: 1272 IPKETAKVRDIVGGLPRVEELLEAREPKNRAIVSEIDGIVRIYEDADDI--IVYNPITGQ 1329 Query: 1183 SDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDI-----LRLRGVHAVT------- 1230 S+ Y+ +PK + V G+ V+ G ++D + L+ +GV + Sbjct: 1330 SETYD--VPKDALVIVKNGQHVQEGQHLTDDGSVKAEFEGIVRLKSKGVKVIVFNKETGL 1387 Query: 1231 ---------RYIV-----------------NEVQDVYRLQG------------------- 1245 ++I+ D+ ++ G Sbjct: 1388 QREYSIAKGKFIIVKDGETVKAGDPLTDGTPNPHDILKIMGPEELAKFLVKEVQMVYRLQ 1447 Query: 1246 -VKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSR 1304 V INDKH EVI+RQ+LRK IV+ G S FL E V+ ++ + + G Sbjct: 1448 GVDINDKHFEVIIRQILRKVKIVDPGDSRFLLNEIVDRIDLEEEIQRIAEEGGKPPKAEP 1507 Query: 1305 DLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362 L+GITKASL+T S+ISAASFQETTRVL +AAV GK D+L GLKENVI+G ++PAGTG Sbjct: 1508 VLVGITKASLSTRSWISAASFQETTRVLADAAVEGKEDKLEGLKENVIIGNIVPAGTG 1565 Score = 233 bits (594), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 113/211 (53%), Positives = 152/211 (72%), Gaps = 22/211 (10%) Query: 17 FDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYK 76 F++I++ LASP+ IR WS GEVKKPET+NYRT KPE+DGLFCA+IFGPVKDYECLCGKYK Sbjct: 13 FESIRLTLASPERIREWSHGEVKKPETLNYRTLKPEKDGLFCAKIFGPVKDYECLCGKYK 72 Query: 77 RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIE 136 + K+ G IC++CGVEVT++ VRRER GHIELASP AHIW+LKS PS+IG LL + RDIE Sbjct: 73 KKKYEGTICDRCGVEVTRSDVRRERFGHIELASPVAHIWYLKSTPSKIGNLLGLTSRDIE 132 Query: 137 RVLYFESYVVIE---------------------GGMTNLERQQILTEEQYLDALE-EFGD 174 RV+YFESY+++E G +T + + +EE++ +A E E + Sbjct: 133 RVIYFESYLIVEHPDEEEEEAFENDPNTIPLMDGALTKYVKLFVKSEEEFREAYEYEHSE 192 Query: 175 EFDAKMGAEAIQALLKSMDLEQECEQLREEL 205 +++ MGAE ++ +L +DLE +LR+E+ Sbjct: 193 KYEYGMGAEKVKDILSRLDLEAYAHKLRKEM 223 >UniRef50_C5SEJ2 DNA-directed RNA polymerase n=6 Tax=Proteobacteria RepID=C5SEJ2_CHRVI Length = 1506 Score = 1134 bits (2933), Expect = 0.0, Method: Compositional matrix adjust. Identities = 541/725 (74%), Positives = 619/725 (85%), Gaps = 8/725 (1%) Query: 1 MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60 MKDLLK +K Q + EFDAIKI LASP+MIRSWS+GEVKKPETINYRTFKPERDGLFCA+ Sbjct: 1 MKDLLKIIKQQGQALEFDAIKIGLASPEMIRSWSYGEVKKPETINYRTFKPERDGLFCAK 60 Query: 61 IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120 IFGP+ DYEC+CGKYKRLKHRGV+CEKCGVEVT KVRRERMGHI+LASP AHIWFLKSL Sbjct: 61 IFGPITDYECICGKYKRLKHRGVVCEKCGVEVTLAKVRRERMGHIDLASPVAHIWFLKSL 120 Query: 121 PSRIGLLLDMPLRDIERVLYFESYVVIEGGM-TNLERQQILTEEQYLDALEEFGDEFDAK 179 PSRIGLLLDM LRDIER+LYFES+VVI+ GM +LER Q+L +EQYLD LE GDEFDA+ Sbjct: 121 PSRIGLLLDMTLRDIERILYFESFVVIDPGMIVDLERGQLLNDEQYLDVLEANGDEFDAR 180 Query: 180 MGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMIL 239 MGAEAI LL+S+D+ E ++REE+ TNSETK KKL KR+KL+E+ + SGN+PEWMIL Sbjct: 181 MGAEAIYELLRSIDMAAEIRRMREEIESTNSETKIKKLAKRLKLMESLLASGNRPEWMIL 240 Query: 240 TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRML 299 TVLPVLPP+LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDL APDIIVRNEKRML Sbjct: 241 TVLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLIAPDIIVRNEKRML 300 Query: 300 QEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP 359 QE+VDALLDNGRRGRAITG+NKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVI VGP Sbjct: 301 QESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGP 360 Query: 360 YLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREH 419 L+LHQCGLPK+MALELFKPFI+ KL+ RGLA TIKAAKKMVER VWDIL+EVIREH Sbjct: 361 TLKLHQCGLPKRMALELFKPFIFSKLQFRGLAATIKAAKKMVERGTPEVWDILEEVIREH 420 Query: 420 PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLE 479 PV+LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVC A+NADFDGDQMAVHVPL+LEAQLE Sbjct: 421 PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE 480 Query: 480 ARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRS 539 ARALMM++NNILSPANGEPIIVPSQDVVLGLYYMTR+ + AKGEG + + EA R Y + Sbjct: 481 ARALMMASNNILSPANGEPIIVPSQDVVLGLYYMTRERIGAKGEGALFSNIDEARRAYET 540 Query: 540 GLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKK 599 G A LHAR VR+ E K +G L +TSLK+TTVGRA+++ IVP+GLP+ +V++ LGKK Sbjct: 541 GHADLHARCTVRLREVIKHKDGSLTERTSLKETTVGRAMVFAIVPEGLPFELVDRPLGKK 600 Query: 600 AISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPE-------KKHE 652 IS ++NTCYR LGLK TV+FADQ+MY GF A R+G S+G+DDM +P K Sbjct: 601 QISMLINTCYRRLGLKDTVVFADQVMYLGFRMATRAGVSIGLDDMEVPRDDQDAKMDKGA 660 Query: 653 IISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQ 712 +++ AE EV EIQ+Q+ SGLVT GERYNKV+DIW+ ND+V+KAMM L T+ G Sbjct: 661 LLAAAELEVQEIQQQYASGLVTNGERYNKVVDIWSRTNDQVAKAMMSKLGTDLAKTDPGF 720 Query: 713 EEKQV 717 E +++ Sbjct: 721 EAERL 725 Score = 904 bits (2336), Expect = 0.0, Method: Compositional matrix adjust. Identities = 457/664 (68%), Positives = 535/664 (80%), Gaps = 3/664 (0%) Query: 712 QEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQ 771 +E KQ SFNSIYMMA+SGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNV+Q Sbjct: 819 EERKQDSFNSIYMMANSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVIQ 878 Query: 772 YFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDV 831 YFISTHGARKGLADTALKTANSGYLTRRLVDVAQD+VV E+DCGT +G++M PVIEGGDV Sbjct: 879 YFISTHGARKGLADTALKTANSGYLTRRLVDVAQDMVVLEEDCGTDQGLLMAPVIEGGDV 938 Query: 832 KEPLRDRVLGRVTAEDVLKPG--TADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCD 889 EPLRDR+LGRVTA DV +PG +++ TLL E W + E+ +D V+VRS ++C+ Sbjct: 939 VEPLRDRILGRVTAVDVYRPGVDNPELICKAGTLLDEGWVERFEDVGIDQVRVRSPITCE 998 Query: 890 TDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESS 949 + GVCA CYGRDLARGH +N GEA+GVIAAQSIGEPGTQLTMRTFHIGGAASRAAA SS Sbjct: 999 SRLGVCAQCYGRDLARGHRVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVSS 1058 Query: 950 IQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGE 1009 I++KN GS +L N+K+V + SG LV SR+ EL ++DE G KE YKVPYGA L GDG+ Sbjct: 1059 IEIKNGGSARLHNIKTVQHHSGNLVAVSRSGELTVVDERGMEKERYKVPYGATLRVGDGD 1118 Query: 1010 QVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTA 1069 V G+ VA WDPHT PV+TEV+G + F D I+G T+ QTD++TGLSSLVV+D +R A Sbjct: 1119 AVKPGDVVATWDPHTHPVVTEVAGRLEFEDFIEGVTVQAQTDDVTGLSSLVVIDPKQRPA 1178 Query: 1070 GGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESG 1129 GKDLRP +K++D GN++ I GTD+PA+Y L AIV + +G + GD LARIPQES Sbjct: 1179 AGKDLRPMVKLLDENGNELNIAGTDLPARYALSSGAIVSVANGANVGVGDILARIPQESS 1238 Query: 1130 GTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEM 1189 T+DITGGLPRVADLFEAR+PKEPA+LAE SG + FGK+TKGK+RL+IT DG + EE+ Sbjct: 1239 KTRDITGGLPRVADLFEARKPKEPALLAEASGTIGFGKDTKGKQRLIITKDDG-ETVEEL 1297 Query: 1190 IPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKIN 1249 IPKWR +NVFEGERVERG+VI+DG A HDILRL+GV A+ Y+V E+QDVYRLQGVKIN Sbjct: 1298 IPKWRHVNVFEGERVERGEVIADGELASHDILRLKGVTALAEYLVKEIQDVYRLQGVKIN 1357 Query: 1250 DKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGI 1309 DKHIEVIVRQMLRK + G + L GEQVE++ + N+ A GK A Y LLGI Sbjct: 1358 DKHIEVIVRQMLRKVEVTAPGDTRLLRGEQVEHALLIDENKRAMAEGKQPALYEPLLLGI 1417 Query: 1310 TKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDR 1369 TKASLATESFISAASFQETTRVLTEAAV G D L GLKENVIVGRLIPAGTG +YHQ+R Sbjct: 1418 TKASLATESFISAASFQETTRVLTEAAVRGSTDRLVGLKENVIVGRLIPAGTGLSYHQER 1477 Query: 1370 MRRR 1373 R+R Sbjct: 1478 RRQR 1481 >UniRef50_B0VGC0 DNA-directed RNA polymerase n=2 Tax=Bacteria RepID=B0VGC0_9BACT Length = 1509 Score = 1130 bits (2923), Expect = 0.0, Method: Compositional matrix adjust. Identities = 573/1196 (47%), Positives = 797/1196 (66%), Gaps = 47/1196 (3%) Query: 4 LLKFLKAQTKTEEFDAIKIALASPDMIRS-WSFGEVKKPETINYRTFKPERDGLFCARIF 62 +LK K + K E+DA++I +ASP+ IR+ WS GEV KP+T+NYRT KPE+DGLFC RIF Sbjct: 17 MLKESKHEIKPNEYDAVRIKIASPETIRNDWSHGEVTKPDTLNYRTLKPEKDGLFCERIF 76 Query: 63 GPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPS 122 GP +DYEC CGKYK+ + +G +C++CGV VT ++VRR RMGHI+LA P AHIWF+KS PS Sbjct: 77 GPERDYECACGKYKKKRFQGTVCDRCGVLVTTSRVRRTRMGHIDLAVPIAHIWFVKSAPS 136 Query: 123 RIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGA 182 +IG LLDM ++D+ERVLY+ES++VI+ G + E+ ++L ++Y + ++ D F A MG Sbjct: 137 KIGTLLDMTVKDLERVLYYESFIVIDPGDSPFEKMELLEVDEYYEIKDKVADNFLALMGG 196 Query: 183 EAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVL 242 EAI+ LLK ++L+ E LR L S +++KL ++K+++AF++SGN+PE MIL L Sbjct: 197 EAIRELLKRINLKNEALDLRTRLKFEESALRKQKLINKLKIVDAFIKSGNRPEDMILEAL 256 Query: 243 PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEA 302 PVLPP LRPLVPL+GGRFAT+D NDLYRRVI RNNRLK LL++ AP++I+RNEKRMLQEA Sbjct: 257 PVLPPTLRPLVPLEGGRFATADFNDLYRRVITRNNRLKALLEIRAPEVILRNEKRMLQEA 316 Query: 303 VDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLR 362 VDAL+DNGR+ R + G RPLKSL D +KGKQGRFRQNLLGKRVDYSGRSVITVGP L+ Sbjct: 317 VDALIDNGRKARPVRGRGNRPLKSLTDQLKGKQGRFRQNLLGKRVDYSGRSVITVGPELK 376 Query: 363 LHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVL 422 L+QCGLPK+MA+ELFKP++ KL+ G +K AKK++E+++ +W IL+EVI+++PVL Sbjct: 377 LYQCGLPKEMAVELFKPYLIEKLQKIGEVDKVKNAKKLIEKKQPEIWSILEEVIKDYPVL 436 Query: 423 LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARA 482 LNRAPTLHRLGIQAF PVL + KAIQLHP+VC +NADFDGDQM V++PL++E+Q+EAR Sbjct: 437 LNRAPTLHRLGIQAFMPVLTDNKAIQLHPMVCVPFNADFDGDQMGVYIPLSIESQIEARV 496 Query: 483 LMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVL---TGPKEAERLYRS 539 LM+ST N+L PANG + +QD+VLG YY+T + E L GP E Y + Sbjct: 497 LMLSTRNLLLPANGRLAMAANQDIVLGCYYLTMEETPPPVEIEKLRHFYGPDEVIAAYEA 556 Query: 540 GLASLHARVKVRITEYEKDANGELVAKTSLKD----TTVGRAILWMIVPKGLPYSIVNQA 595 ++ + T YE++ + + L+ TTVGR I I+P + + N Sbjct: 557 EEQFCSSKGE---TVYERNLDLHTWIRLKLESEYIVTTVGRVIFNQIMPPEVGFQ--NIV 611 Query: 596 LGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIIS 655 K ++ + C+ +G T DQI GF YA R+G + DD+V+P++K EII+ Sbjct: 612 FDKGKLNDLAMLCFDAVGQWRTAQILDQIKELGFHYATRAGVTFSFDDIVVPKRKDEIIA 671 Query: 656 EAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEK 715 +A+ EV +I + Q G +T ER+ +V+D W RV+ MM+ L R+G Sbjct: 672 QADQEVKKITDLHQKGGITENERFGRVVDQWKKTTVRVTDEMMEELSK----TRNG---- 723 Query: 716 QVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPD-------GSIIETPITANFREGLN 768 NSIYMM SGARGS QI+QL GMRGLM KP +IETPI +NF+EGL Sbjct: 724 ---LNSIYMMYKSGARGSKDQIKQLGGMRGLMDKPTKIGSTGGADVIETPIKSNFKEGLT 780 Query: 769 VLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEG 828 VL+YF+STHGARKGLADTALKTA++GYLTRRLVDVAQ+ ++T +DCGT G+ MT + EG Sbjct: 781 VLEYFVSTHGARKGLADTALKTADAGYLTRRLVDVAQNAIITIEDCGTTRGVNMTALKEG 840 Query: 829 GDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSC 888 ++ + L +R+ GR +D++ P T ILV + + ++ + + +V VRS+++C Sbjct: 841 NEIVQTLAERIQGRTAVDDIVSPITGRILVSAGEEISNKMARTIQNHGLISVHVRSILTC 900 Query: 889 DTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAES 948 + + G+CA CYGR+LA G+ +G+IAAQSIGEPGTQLT+RTFHIGGAAS A + Sbjct: 901 EAEKGICAKCYGRNLATQKPATIGDPVGIIAAQSIGEPGTQLTLRTFHIGGAASTATELA 960 Query: 949 SIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTK--ESYKVPYGAVLAKG 1006 + + G +K + +V+N+ +L+ S ++ ++DE K E +KV Y A + Sbjct: 961 EVVASHDGIVKFDRMNTVINTENQLISVSYLGKILIVDENDENKVLEEFKVEYAATVHVQ 1020 Query: 1007 DGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAE 1066 DG++VA + +WD P+I+ G + + + I T + +++T L +++S + Sbjct: 1021 DGQKVAKDTKLLSWDQFNNPLISTAKGVLHYENFIKDITYKEEYNDITMARELTIIESKD 1080 Query: 1067 RTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQ 1126 R +P +IV G LIP LP IV++EDG + GD L + + Sbjct: 1081 RRK-----QPQFRIVGEDGTVRLIP---------LPTGLIVRVEDGSFVHIGDILGQTSR 1126 Query: 1127 ESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDG 1182 + +DITGGLPRV DLFEAR PK+ A +++I GIV+ G K R + +TP +G Sbjct: 1127 MTIKQRDITGGLPRVQDLFEARVPKDKAKISDIDGIVTIGGLKKTGRDIFVTPPNG 1182 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 133/420 (31%), Positives = 211/420 (50%), Gaps = 40/420 (9%) Query: 997 VPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGL 1056 +P G ++ DG V G+ + T+ G R D+ + + + + +++ + Sbjct: 1101 LPTGLIVRVEDGSFVHIGDILGQTSRMTIKQRDITGGLPRVQDLFEAR-VPKDKAKISDI 1159 Query: 1057 SSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYF--LPGKAIVQLEDG-- 1112 +V + ++T + P + V++ + QY LP KA+ DG Sbjct: 1160 DGIVTIGGLKKTGRDIFVTPPNGLFAPCDGKVVVLYDEDKNQYIAVLPDKAVYSENDGKV 1219 Query: 1113 ----------VQISS-GDTLARIPQESG------GTKDITGGLPRVADLFEARRPKEPAI 1155 +Q++ + P G + + G P L+ P E Sbjct: 1220 SIIEENRKKIIQVAKRNQNPVQYPVPKGLQILVKEGESVKKGTPLCGKLYAV--PPEQES 1277 Query: 1156 LAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPE 1215 + EI V+ + G++ + IP +++ V +G+ VE GD +SDGP Sbjct: 1278 IVEIGDNVTMHQPLAGRKYI--------------IPSGKRIIVHQGDYVESGDALSDGPL 1323 Query: 1216 APHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFL 1275 PHD+L ++GV I+NE+Q++YR QGVKI+DKH+ VI+RQM +K I ++GS+ FL Sbjct: 1324 DPHDML-VKGVIEAQILILNEIQEIYRKQGVKIDDKHVSVIIRQMFKKVRITDSGSTSFL 1382 Query: 1276 EGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEA 1335 +G+ V+ V+ NRE GK A + + LLGITK SL TES++SAASFQETT+VLT+A Sbjct: 1383 QGDIVDKVLVEKENREAIEFGKTPAQFEQLLLGITKTSLLTESWLSAASFQETTKVLTKA 1442 Query: 1336 AVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQVTAEDASASLAE 1395 A+ G+ D L GLKE++I+G IP GTG + + M ++A E Q+ E A S E Sbjct: 1443 AIEGRVDHLEGLKESIIIGHRIPVGTGTKLYNN-MLKKAVNEGKTVAQIIDEFAHRSKEE 1501 >UniRef50_B2UUV9 DNA-directed RNA polymerase subunit beta' n=5926 Tax=root RepID=RPOBC_HELPS Length = 2890 Score = 1106 bits (2860), Expect = 0.0, Method: Compositional matrix adjust. Identities = 538/981 (54%), Positives = 717/981 (73%), Gaps = 34/981 (3%) Query: 8 LKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKD 67 +K + ++F + ++ LASP+ I SWS+GEVKKPETINYRT KPERDGLFC +IFGP KD Sbjct: 1387 IKEDDRPKDFSSFQLTLASPEKIHSWSYGEVKKPETINYRTLKPERDGLFCMKIFGPTKD 1446 Query: 68 YECLCGKYKRLKHRGV-ICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGL 126 YECLCGKYK+ + + + CEKCGV +T +KVRR RMGHIELA+P AHIW++ SLPSRIG Sbjct: 1447 YECLCGKYKKPRFKDIGTCEKCGVAITHSKVRRFRMGHIELATPVAHIWYVNSLPSRIGT 1506 Query: 127 LLDMPLRDIERVLYFESYVVIEGGMTNLERQ--------QILTEEQYLDALEEFGDE-FD 177 LL + ++D+ERVLY+E+Y+V E G + + IL EEQY + + D F Sbjct: 1507 LLGVKMKDLERVLYYEAYIVKEPGEAAYDNEGTKLVMKYDILNEEQYQNISRRYEDRGFV 1566 Query: 178 AKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWM 237 A+MG EAI+ LL+ +DL + L+EE+ +TNS+ K+KKL KR+K++E+F+ SGN+PEWM Sbjct: 1567 AQMGGEAIKDLLEEIDLITLLQSLKEEVKDTNSDAKKKKLIKRLKVVESFLNSGNRPEWM 1626 Query: 238 ILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKR 297 +LTVLPVLPPDLRPLV LDGG+FA SD+N+LYRRVINRN RLKRL++L AP+IIVRNEKR Sbjct: 1627 MLTVLPVLPPDLRPLVALDGGKFAVSDVNELYRRVINRNQRLKRLMELGAPEIIVRNEKR 1686 Query: 298 MLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITV 357 MLQEAVD L DNGR A+ G+NKRPLKSL+++IKGKQGRFRQNLLGKRVD+SGRSVI V Sbjct: 1687 MLQEAVDVLFDNGRSTNAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSGRSVIVV 1746 Query: 358 GPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIR 417 GP L++ +CGLPK MALELFKP + KLE RG ATT+K AK+M+E++ VW+ L E+ Sbjct: 1747 GPNLKMDECGLPKNMALELFKPHLLSKLEERGYATTLKQAKRMIEQKSNEVWECLQEITE 1806 Query: 418 EHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQ 477 +PVLLNRAPTLH+ IQAF P LI+GKAIQLHPLVC+A+NADFDGDQMAVHVPL+ EA Sbjct: 1807 GYPVLLNRAPTLHKQSIQAFHPKLIDGKAIQLHPLVCSAFNADFDGDQMAVHVPLSQEAI 1866 Query: 478 LEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLY 537 E + LM+S+ NIL PA+G+ +++PSQD+VLGLYY++ + KGE + + E Sbjct: 1867 AECKVLMLSSMNILLPASGKAVVIPSQDMVLGLYYLSLEKSGVKGEHKLFSSVNEIITAI 1926 Query: 538 RSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALG 597 + +HA+++V G ++A T+ GR I+ I+P +P + N+ + Sbjct: 1927 DTKELDIHAKIRVL-------DQGNIIA------TSAGRMIIKSILPDFIPTDLWNRPMK 1973 Query: 598 KKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEA 657 KK I +++ +++ G+ T F D + GF YA ++G S+ ++D++ P+ K +++ +A Sbjct: 1974 KKDIGVLVDYVHKVGGIGITATFLDNLKTLGFRYATKAGISISMEDIITPKDKQKMVEKA 2033 Query: 658 EAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQV 717 + EV +IQ+Q+ GL+T ERYNK+ID W ND++SK MM + I +D + Sbjct: 2034 KVEVKKIQQQYDQGLLTDQERYNKIIDTWTEVNDKMSKEMM------STIAQDKE----- 2082 Query: 718 SFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTH 777 FNSIYMMADSGARGSAAQIRQL+ MRGLM KPDGSIIETPI +NF+EGLNVL+YF STH Sbjct: 2083 GFNSIYMMADSGARGSAAQIRQLSAMRGLMTKPDGSIIETPIISNFKEGLNVLEYFNSTH 2142 Query: 778 GARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRD 837 GARKGLADTALKTAN+GYLTR+L+DV+Q++ V DDCGTHEGI +T + G ++ EPL + Sbjct: 2143 GARKGLADTALKTANAGYLTRKLIDVSQNVKVVSDDCGTHEGIEITDIAVGSELIEPLEE 2202 Query: 838 RVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAH 897 R+ GRV EDV+ P T +IL+ +TL+ E+ + E + ++ +R+ V+C GVCA Sbjct: 2203 RIFGRVLLEDVIDPITNEILLYADTLIDEEGAKKVVEAGIKSITIRTPVTCKAPKGVCAK 2262 Query: 898 CYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGS 957 CYG +L G + GEA+GV+AAQSIGEPGTQLT+RTFH+GG ASR+ E I +G Sbjct: 2263 CYGLNLGEGKMSYPGEAVGVVAAQSIGEPGTQLTLRTFHVGGTASRSQDEREIVASKEGF 2322 Query: 958 IKLSNVKSVVNSSGKLVITSR 978 ++ N+++ N GK +I +R Sbjct: 2323 VRFYNLRTYTNKEGKSIIANR 2343 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 166/407 (40%), Positives = 240/407 (58%), Gaps = 29/407 (7%) Query: 986 DEFGRTKESYKVPYGAVLAKGDGEQVAGG-----------ETVANWDPHTMPVITEVSGF 1034 D+ GR + + G+ + D +V +T+A WDP+ P+I + G Sbjct: 2498 DDNGREAARHYIARGSEILIDDNSEVGANSVISKPTTNTFKTIATWDPYNTPIIADFKGK 2557 Query: 1035 VRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTD 1094 V F D+I G T+ + DE TG +SLVV D +P+L + G +V Sbjct: 2558 VGFVDIIAGVTVAEKEDENTGTTSLVVNDYIP-----SGYKPSLFLEGINGEEV------ 2606 Query: 1095 MPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPK--E 1152 +YFL K + + DGV + + LA+IP+ + ++DITGGLPRV++LFEAR+PK + Sbjct: 2607 ---RYFLEPKTSIAISDGVSVEQAEVLAKIPKATVKSRDITGGLPRVSELFEARKPKPKD 2663 Query: 1153 PAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISD 1212 AIL+E+ GIVSFGK + K +++T DG P + + K +Q+ V E V G+ ++D Sbjct: 2664 VAILSEVDGIVSFGKPIRNKEHIIVTSKDGR-PMDYFVDKGKQILVHADEFVHAGEAMTD 2722 Query: 1213 GPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSS 1272 G + HDILR+ G + +YIV+EVQ VYR QGV I DKHIE+IV QMLR+ I+++G S Sbjct: 2723 GVVSSHDILRISGEKELYKYIVSEVQQVYRRQGVSIADKHIEIIVSQMLRQVRILDSGDS 2782 Query: 1273 DFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVL 1332 F+EG+ V K N + A A LLGIT+A++ ++S ISAASFQETT+VL Sbjct: 2783 KFIEGDLVSKKLFKEENARVIALKGEPAIAEPVLLGITRAAIGSDSIISAASFQETTKVL 2842 Query: 1333 TEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAP 1379 TEA++A K+D L LKENV++GR+IP GTG Y ++ R + P Sbjct: 2843 TEASIAMKKDFLEDLKENVVLGRMIPVGTG-MYKNKKIVLRTLEDDP 2888 >UniRef50_A9KJL3 DNA-directed RNA polymerase subunit beta' n=170 Tax=Bacteria RepID=RPOC_CLOPH Length = 1255 Score = 1105 bits (2857), Expect = 0.0, Method: Compositional matrix adjust. Identities = 550/1036 (53%), Positives = 730/1036 (70%), Gaps = 48/1036 (4%) Query: 17 FDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYK 76 +DAIKI LASP+ IR WS GEV+KPETINYRT KPE+DGLFC +IFGP KD+EC CGKYK Sbjct: 15 YDAIKIGLASPEKIREWSRGEVRKPETINYRTLKPEKDGLFCEKIFGPNKDWECHCGKYK 74 Query: 77 RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIE 136 +++++GV+C++CGVEVT+ VRRERMGHIELA+P +HIW+ K +PSR+GL+LD+ R +E Sbjct: 75 KIRYKGVVCDRCGVEVTKASVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDLSPRTLE 134 Query: 137 RVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQ 196 +VLYF SY+V++ G T+L+ +Q+L E+++ +A +++GD F MGAEAI LL+++DLE+ Sbjct: 135 KVLYFASYIVLDKGTTDLQYKQVLNEKEFREAYDKYGDRFRVGMGAEAIMELLEAIDLEK 194 Query: 197 ECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLD 256 E + L+ L E+ + KR ++ KR++++EAF +SGNKPEWMI+TV+PV+PPDLRP+V LD Sbjct: 195 ESKDLKRGLKESTGQ-KRARIIKRLEVVEAFRESGNKPEWMIMTVVPVIPPDLRPMVQLD 253 Query: 257 GGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAI 316 GGRFATSD+NDLYRR+INRNNRLKRLL+L APDIIVRNEKRMLQEAVDAL+DNGRRGR + Sbjct: 254 GGRFATSDMNDLYRRIINRNNRLKRLLELGAPDIIVRNEKRMLQEAVDALIDNGRRGRPV 313 Query: 317 TGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALEL 376 TG RPLKSL+DM+KGKQGRFRQNLLGKRVDYSGRSVI VGP L+++QCGLPK+MA+EL Sbjct: 314 TGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKIYQCGLPKEMAIEL 373 Query: 377 FKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQA 436 FKPF+ +L +G A IK+AKKMVER + VWDIL+EVIREHPV+LNRAPTLHRLGIQA Sbjct: 374 FKPFVMKELVAKGTAHNIKSAKKMVERLQPEVWDILEEVIREHPVMLNRAPTLHRLGIQA 433 Query: 437 FEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANG 496 FEPVL+EGKAI+LHPLVC A+NADFDGDQMAVH+PL++EAQ E R L++S NN+L P++G Sbjct: 434 FEPVLVEGKAIKLHPLVCTAFNADFDGDQMAVHLPLSVEAQAECRFLLLSPNNLLKPSDG 493 Query: 497 EPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYE 556 P+ VPSQD+VLG+YY+T GEG EA Y +G+ SLHA +KVR T Sbjct: 494 GPVAVPSQDMVLGIYYLTLQKPGDIGEGKYFKSVNEAILAYENGVISLHAMIKVRRT--- 550 Query: 557 KDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSI-----------VNQALGKKAISKML 605 N E V ++ ++TVGR I I+ + L + ++ GKK + K+L Sbjct: 551 -GLNAEGVEESRTIESTVGRFIFNEIISQDLGFVDRSKPENFLALEIDFHTGKKQLKKIL 609 Query: 606 NTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQ 665 C G T D I G+ Y+ R+ +V I DM +PE K +II AE +V +I Sbjct: 610 EKCINTRGATQTAETLDAIKSLGYKYSTRAAMTVSISDMTVPEAKKDIIERAEKQVEDIA 669 Query: 666 EQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMM 725 + + GL+T ERY VI+ W A+D ++K ++ L +N+I+MM Sbjct: 670 KNHRRGLMTEEERYKAVIETWKEADDEITKELLSGLD---------------KYNNIFMM 714 Query: 726 ADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLAD 785 ADSGARGS QI+QLAGMRGLMA G IE PI ANFREGL+VL+YFIS HGARKGL+D Sbjct: 715 ADSGARGSDKQIKQLAGMRGLMADTSGKTIELPIKANFREGLDVLEYFISAHGARKGLSD 774 Query: 786 TALKTANSGYLTRRLVDVAQDLVVTEDDC--GTHE--GIMMTPVIEGGDVKEPLRDRVLG 841 TAL+TA+SGYLTRRLVDV+QDL++ E DC GT E G+ + ++G +V E L DR++G Sbjct: 775 TALRTADSGYLTRRLVDVSQDLIIREVDCGEGTDEIPGMEIKAFMDGKEVIEGLEDRIIG 834 Query: 842 RVTAEDVLKPGTADILVPRNTLLHEQWCDLLE-----ENSVDAVKVRSVVSCDTDFGVCA 896 R E + +++V +N ++ + + E+ +K+R+V+SC + GVCA Sbjct: 835 RYACETIYD-DNGELIVKKNHIITPKRAARIVASKAFEDPNATIKIRTVLSCKSHIGVCA 893 Query: 897 HCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKG 956 CYG ++A G + GEA+G+IAAQSIGEPGTQLTMRTFH GG A + +V+ Sbjct: 894 KCYGANMATGEAVQVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVEELF 953 Query: 957 SIKLSNVKSVVNSSGKLVI---TSRNTELKLIDEFGRTKES--YKVPYGAVLAKGDGEQV 1011 + +++ G V T + E+ + T ES Y +PYG+ + D + + Sbjct: 954 EARKPKGLAIIAEFGGTVTIKDTKKKREVIVTRTSNDTLESKAYLIPYGSRIKVMDEQVI 1013 Query: 1012 AGGE--TVANWDPHTM 1025 G+ T + +PH + Sbjct: 1014 EAGDELTEGSVNPHDI 1029 Score = 235 bits (600), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 127/238 (53%), Positives = 167/238 (70%), Gaps = 3/238 (1%) Query: 1133 DITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPV--DGSDPYEEMI 1190 DIT GLPRV +LFEAR+PK AI+AE G V+ K+TK KR +++T D + +I Sbjct: 941 DITQGLPRVEELFEARKPKGLAIIAEFGGTVTI-KDTKKKREVIVTRTSNDTLESKAYLI 999 Query: 1191 PKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKIND 1250 P ++ V + + +E GD +++G PHDIL+++GV AV Y++ EVQ VYRLQGV+IND Sbjct: 1000 PYGSRIKVMDEQVIEAGDELTEGSVNPHDILKIKGVRAVQDYMIQEVQRVYRLQGVEIND 1059 Query: 1251 KHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGIT 1310 KHIEVIVRQML+K + N G ++FL G V+ N L A G A + +LGIT Sbjct: 1060 KHIEVIVRQMLKKVRVENNGDAEFLPGTMVDILEYNDVNESLAAKGLEQAEGKQVMLGIT 1119 Query: 1311 KASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD 1368 KASLAT SF+SAASFQETT+VLTEAA+ GK D L GLKENVI+G+LIPAGTG ++++ Sbjct: 1120 KASLATNSFLSAASFQETTKVLTEAAIKGKIDPLIGLKENVIIGKLIPAGTGMKHYRN 1177 >UniRef50_C7GZQ7 DNA-directed RNA polymerase n=2 Tax=Clostridiales RepID=C7GZQ7_9FIRM Length = 1240 Score = 1102 bits (2851), Expect = 0.0, Method: Compositional matrix adjust. Identities = 550/1034 (53%), Positives = 726/1034 (70%), Gaps = 45/1034 (4%) Query: 6 KFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPV 65 +F K + +EF+++++ LAS + I WS GEV KPETINYRT KPE+DGLFC +IFGP Sbjct: 3 RFEKEKETVKEFESLRVGLASKEKILEWSRGEVTKPETINYRTLKPEKDGLFCEKIFGPA 62 Query: 66 KDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIG 125 KD+EC CGK+K+ +HRG++C+KCGVEVT+ VRRERMGHI+LA P +HIW+ K +PSR+ Sbjct: 63 KDFECSCGKFKKREHRGIVCDKCGVEVTKKDVRRERMGHIKLAGPVSHIWYFKGVPSRMS 122 Query: 126 LLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALE-----EFGDEFDAKM 180 LLLD+P +++E+VLYF SYVV+E G + L + ++ EE++ A E + +F A+M Sbjct: 123 LLLDIPPKNLEKVLYFASYVVLEPGDSGLNYKDVIGEEEFRAASETATGSKSKKKFRAEM 182 Query: 181 GAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT 240 GA AIQ LL+ +D E+ ++++ E+ E S K KL +R+++ EAF SGNKPEWMIL Sbjct: 183 GAAAIQELLRDVDPEKIVKEIKGEI-EGTSGQKHTKLARRLEVAEAFRSSGNKPEWMILD 241 Query: 241 VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ 300 V+PV+PPDLRP+V LDGGRFATSDLNDLYRRVINRNNRL + +D+ AP II RNE+RMLQ Sbjct: 242 VIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLSKFIDMGAPAIIQRNERRMLQ 301 Query: 301 EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360 EAVD+L+DNGRRG+A++GS RPLKSL+DM+KGKQGRFRQNLLGKRVDYSGRSVI VGP Sbjct: 302 EAVDSLIDNGRRGKAVSGSGGRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPE 361 Query: 361 LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP 420 L+ +QCGLPK MALELFK FI KL GLA IK+AKKMVE + VWD+L++VI+EHP Sbjct: 362 LKFYQCGLPKMMALELFKTFIMKKLTEEGLAINIKSAKKMVEEYDDAVWDVLEDVIKEHP 421 Query: 421 VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480 V+LNRAPTLHRLGIQAFEPVL+EGKAI+LHPLVC A+NADFDGDQMAVH+PL+LEAQ EA Sbjct: 422 VMLNRAPTLHRLGIQAFEPVLVEGKAIKLHPLVCTAFNADFDGDQMAVHLPLSLEAQAEA 481 Query: 481 RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT------RDCVNAKGEGMVLTGPKEAE 534 R LM+STNNIL+P +G PI VP+QD++LG Y++T RD KG+G + +E Sbjct: 482 RFLMLSTNNILAPKDGSPITVPTQDMILGSYFLTHGGIESRDTEAEKGDGKCFSDHEEML 541 Query: 535 RLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGL------- 587 Y G+ +HA+VKVR + D +G+LV ++TVGR IL +P+ L Sbjct: 542 MAYMEGIVGIHAKVKVRRHLNKDDKSGKLV------ESTVGRFILNEKIPQDLGFVNREE 595 Query: 588 -PYSI-VNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMV 645 PY++ V+ K + ++++ CY+ G T I D I GF Y+ ++ I DM Sbjct: 596 DPYALEVDFLCAKDKLREIIDKCYKKHGNTKTAIMLDYIKEMGFRYSTLGAITISISDME 655 Query: 646 IPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTET 705 IPE K II AE EVA+ E F++GL + ERY KVI+IW A + V+ A+MD+L T Sbjct: 656 IPEAKKTIIDAAEDEVAKCDEAFENGLYSKEERYGKVINIWDKATNDVADALMDSLGT-- 713 Query: 706 VINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFRE 765 N++Y+MA SGARGS QIRQ+ GMRGLMA G IE PI ANFRE Sbjct: 714 -------------LNNLYIMAHSGARGSKNQIRQIGGMRGLMANATGKTIEIPIKANFRE 760 Query: 766 GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPV 825 GL+VL+YFIST+GARKGLADTAL+TA+SGYLTRRLVDV+ +++VTE+DC T EG+ + Sbjct: 761 GLSVLEYFISTNGARKGLADTALRTADSGYLTRRLVDVSHNVIVTEEDCNTDEGVYVEAF 820 Query: 826 IEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSV 885 EG V EPL R+ GR AED+L +I+ +N + + +E+ ++ VK+RSV Sbjct: 821 TEGKQVIEPLAQRITGRTAAEDILD-SDGNIITAKNDEISDDDAKRIEKLGIERVKIRSV 879 Query: 886 VSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAA 945 ++C+ GVCA CYGR+LA G +N+GEA+G++AAQSIGEPGTQLTMRTFH GG A Sbjct: 880 MTCECKSGVCAKCYGRNLATGEEVNRGEAVGIMAAQSIGEPGTQLTMRTFHTGGVAGSDI 939 Query: 946 AESSIQVKNKGSIKL-SNVKSVVNSSGKLVITSRNTELKL-IDEFGRTKESYKVPYGAVL 1003 + +V + + + + GK+ R + K + G ++ Y++PYGA L Sbjct: 940 TQGLPRVVELFEARQPKGLAEICRADGKVTDILRQGDGKFEVIVSGEEEQRYEIPYGARL 999 Query: 1004 AKGDGEQVAGGETV 1017 + ++V G+ + Sbjct: 1000 SVKKDDEVKAGQNI 1013 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 117/237 (49%), Positives = 158/237 (66%), Gaps = 4/237 (1%) Query: 1133 DITGGLPRVADLFEARRPKEPAILAEISGIVS-FGKETKGKRRLVITPVDGSDPYEEMIP 1191 DIT GLPRV +LFEAR+PK A + G V+ ++ GK ++++ G + IP Sbjct: 938 DITQGLPRVVELFEARQPKGLAEICRADGKVTDILRQGDGKFEVIVS---GEEEQRYEIP 994 Query: 1192 KWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDK 1251 +L+V + + V+ G I++GP P DIL GV V Y+V EVQ VY+ QGV INDK Sbjct: 995 YGARLSVKKDDEVKAGQNITEGPLYPEDILEHVGVTGVYDYLVKEVQKVYKQQGVDINDK 1054 Query: 1252 HIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITK 1311 HIEVIV +ML KA ++ AG ++ + G S + AN++ + GK AT R LLGITK Sbjct: 1055 HIEVIVSKMLSKARVITAGDTNLMPGGLYALSEINNANKKAKEEGKKAATSKRVLLGITK 1114 Query: 1312 ASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD 1368 ASL T+SF+SAASFQETTR+LT+AA GK+D L+GLKENVIVG+L+PAGTG +++ Sbjct: 1115 ASLETDSFLSAASFQETTRMLTDAATKGKKDRLKGLKENVIVGKLVPAGTGMKRYKN 1171 >UniRef50_B0S2E5 DNA-directed RNA polymerase subunit beta' n=47 Tax=Clostridia RepID=RPOC_FINM2 Length = 1202 Score = 1102 bits (2850), Expect = 0.0, Method: Compositional matrix adjust. Identities = 549/1018 (53%), Positives = 723/1018 (71%), Gaps = 47/1018 (4%) Query: 17 FDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYK 76 F+A+KI LASPD IR WS+GEVKKPETINYRT KPE++GLFC +IFGP KDYEC CGKYK Sbjct: 7 FEAMKIGLASPDKIRQWSWGEVKKPETINYRTLKPEKEGLFCEKIFGPTKDYECNCGKYK 66 Query: 77 RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIE 136 R++++G++CEKCGVEVT++KVRRERMGHIELA+P +HIW+ K +PSR+GLLLDM R +E Sbjct: 67 RIRYKGIVCEKCGVEVTKSKVRRERMGHIELATPVSHIWYFKGIPSRMGLLLDMSPRALE 126 Query: 137 RVLYFESYVVIEGGMTNLERQQILTE---EQYLDALEEFGDEFDAKMGAEAIQALLKSMD 193 +VLYF S+VVI+ G T+L +Q+LTE E+Y D EE D F AKMGAEAI+ LL+ +D Sbjct: 127 KVLYFASFVVIDPGKTDLYEKQLLTEQEYEEYCDKYEEDVD-FRAKMGAEAIKELLQKID 185 Query: 194 LEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLV 253 L++E + L E E ++ K+ ++ +R++++EAF++S N P WMI+ V+PV+PPD+RP+V Sbjct: 186 LQEEYKNLTETF-EGSTGQKKVRILRRLEVVEAFIESKNDPSWMIMDVIPVIPPDIRPMV 244 Query: 254 PLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRG 313 L+GGRFATSDLNDLYRRVINRNNRLKRLLD+ +P+IIVRNEKRMLQEAVDAL+DNGRRG Sbjct: 245 QLEGGRFATSDLNDLYRRVINRNNRLKRLLDIGSPEIIVRNEKRMLQEAVDALIDNGRRG 304 Query: 314 RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMA 373 + +TG RPLKSL+DM+KGK GRFRQNLLGKRVDYSGRSVI +GP L+ +QCGLPKKMA Sbjct: 305 KPVTGPGNRPLKSLSDMLKGKSGRFRQNLLGKRVDYSGRSVIVIGPNLKFYQCGLPKKMA 364 Query: 374 LELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLG 433 LELFKPF+ +L R ++ +K AKK+VERE VWD+L+++I +HPVLLNRAPTLHRLG Sbjct: 365 LELFKPFVIRELVKREISHNVKNAKKLVERENDKVWDVLEDIIVDHPVLLNRAPTLHRLG 424 Query: 434 IQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSP 493 IQAFEP+L+EGKAI+LHPLVC AYNADFDGDQMAVH+PL+ EAQ EAR LM+STNNIL+P Sbjct: 425 IQAFEPILVEGKAIKLHPLVCTAYNADFDGDQMAVHLPLSPEAQAEARLLMLSTNNILAP 484 Query: 494 ANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRIT 553 +G+PI PSQD+VLG +YMT KGEG++ E Y +L VKVR Sbjct: 485 KDGKPITTPSQDMVLGSFYMTTRKEGQKGEGLIFKDIDEMMLAYAMHYVTLQTIVKVRRN 544 Query: 554 EYEKDANGELVAKTSLKDTTVGRAILWMIVPKGL--------PYSI-VNQALGKKAISKM 604 D ++V ++TVGR I +P+ L PYS+ V+ + KK +SK+ Sbjct: 545 SVNNDGTSKIV------ESTVGRFIFNEGIPQDLGMVNRNEDPYSLEVDLQVDKKMLSKI 598 Query: 605 LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEI 664 ++ +R G T D I G+ Y+ ++ + D+ IP+ K II +AE + + Sbjct: 599 IDLTFRRYGNIRTAELLDYIKSMGYKYSTIGALTISMGDITIPDSKKGIIEQAEQRIDMV 658 Query: 665 QEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 724 Q+ + G +T ERY KVI+IW V++A+M NL + N++ + Sbjct: 659 QDIYLQGDITNEERYKKVIEIWEQCIKDVTRALMTNLPAD---------------NNLNI 703 Query: 725 MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA 784 MA SGARGS QIRQL GMRGLM+ G+ IE PIT+NFREGL+V ++FISTHG+RKGL+ Sbjct: 704 MAVSGARGSENQIRQLGGMRGLMSDTAGNTIEIPITSNFREGLSVQEFFISTHGSRKGLS 763 Query: 785 DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT 844 DTAL+TA+SGYLTRRLVDV+QD+++TEDDCGT E I+ + +G E L+ R++GR Sbjct: 764 DTALRTADSGYLTRRLVDVSQDVIITEDDCGTDEYIVAKEIKDGNRQVEDLKSRIIGRYA 823 Query: 845 AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA 904 ED+L T +I+V +N +++E + +E + VKVRSV+ C GVCA CYGR+LA Sbjct: 824 FEDILDLDTGEIIVHKNDMINEAIAERIESKGIKEVKVRSVLGCKMKHGVCAKCYGRNLA 883 Query: 905 RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQV-------KNKGS 957 G +N GEA+G+IAAQSIGEPGTQLTMRTFH GG A +V K KG Sbjct: 884 TGKPVNIGEAVGIIAAQSIGEPGTQLTMRTFHSGGIAGVGITSGLPRVEELFEARKPKGL 943 Query: 958 IKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGE 1015 ++ ++ V K+ + ++ + E G ++ Y++PYGA + +G+ V GE Sbjct: 944 AYITEIEGTV----KIQENKKRNDVIVTSEDGE-EQVYQIPYGAHIRVNEGDHVEKGE 996 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 132/259 (50%), Positives = 171/259 (66%), Gaps = 4/259 (1%) Query: 1134 ITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKW 1193 IT GLPRV +LFEAR+PK A + EI G V +E K + +++T DG + + IP Sbjct: 924 ITSGLPRVEELFEARKPKGLAYITEIEGTVKI-QENKKRNDVIVTSEDGEEQVYQ-IPYG 981 Query: 1194 RQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHI 1253 + V EG+ VE+G+ +++G P DILR+ G V YI+ EVQ VYRLQGV I+DKHI Sbjct: 982 AHIRVNEGDHVEKGEPLTEGSINPQDILRVNGAEGVRDYIIREVQKVYRLQGVDIDDKHI 1041 Query: 1254 EVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKAS 1313 E+I+RQM+ K + +G S FL G V+ K+ N +L GK AT + L+GITKAS Sbjct: 1042 EIIIRQMMSKIKVEESGDSGFLSGSVVDARDFKMTNEQLIKEGKTPATGTHSLMGITKAS 1101 Query: 1314 LATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRR 1373 LATESF+SAASFQETTRVLTE ++ GK D L GLKENVI+G+LIPAGTG A + DR+ Sbjct: 1102 LATESFLSAASFQETTRVLTETSIKGKVDHLIGLKENVIIGKLIPAGTGIAKY-DRIEVD 1160 Query: 1374 AAGEAPAAPQVTAEDASAS 1392 G+A + AE A AS Sbjct: 1161 YDGKA-EDDMIEAEKAQAS 1178 >UniRef50_A8Z5T2 DNA-directed RNA polymerase subunit beta' n=30 Tax=Bacteroidetes RepID=RPOC_SULMW Length = 1464 Score = 1076 bits (2782), Expect = 0.0, Method: Compositional matrix adjust. Identities = 557/1192 (46%), Positives = 791/1192 (66%), Gaps = 104/1192 (8%) Query: 9 KAQTKTEEFDAIKIAL--ASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVK 66 K Q K F KI+L +SP+ I S+GE+ KPETINYRT KPER+GLFC +IFGP+K Sbjct: 3 KKQYKISHFMTTKISLRISSPEEILKDSYGEIIKPETINYRTNKPERNGLFCEKIFGPIK 62 Query: 67 DYECLCGKYKR---------------LKHRGVICEKCGVEVTQTKVRRERMGHIELASPT 111 DYEC CGKYK+ LK +G+ C +CGVE+T+ VRR RMGHI L P Sbjct: 63 DYECFCGKYKKKLYKEIIRLRQLNKELKVKGLFCNRCGVEITKNTVRRTRMGHINLVVPI 122 Query: 112 AHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTN------LERQQILTEEQY 165 HIW +S P++IG +L + + ++ ++Y+E YVVI+ G+ N +++ +LTEE+Y Sbjct: 123 VHIWGFRSTPNKIGSILGLSSQQLDMIIYYERYVVIQPGIANSYNNLSIKKLDLLTEEEY 182 Query: 166 LDALEEFG-----------DEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKR 214 L + ++F AKMGAE ++ LL +DLE L++E+ S+ ++ Sbjct: 183 TYILNKIPIGNKYLYDNDPNKFIAKMGAECLEELLIRVDLEVLLSDLKKEIKNEESKQRK 242 Query: 215 KKLTKRIKLLEAFVQ---SGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRR 271 +L KR+ ++E F++ GNK E +IL VLPV+PP+LRPLVPLDGG +A+SDLND YRR Sbjct: 243 IELFKRLNVVECFIEGKKKGNKIESIILKVLPVIPPELRPLVPLDGGGYASSDLNDFYRR 302 Query: 272 VINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMI 331 ++ RNNRLKRL+ ++AP+II+RNEKRMLQEAVD+LLDN ++ A+ + RPLKSL+D + Sbjct: 303 ILIRNNRLKRLIHISAPEIILRNEKRMLQEAVDSLLDNSKKILAVKSESNRPLKSLSDSL 362 Query: 332 KGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLA 391 KGKQGRFRQNLLGKRVDYS RSVI VGP L+LH+CGLPK++A E++KPF+ KL R + Sbjct: 363 KGKQGRFRQNLLGKRVDYSARSVIVVGPKLKLHECGLPKEIAAEIYKPFLIRKLLERKIV 422 Query: 392 TTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHP 451 T+K+AKK++ +++ ++WDIL +++ HPVLLNRAPTLHRLGIQ+F+P LIEGKAI LHP Sbjct: 423 RTVKSAKKLISKKDPIIWDILKYLLKGHPVLLNRAPTLHRLGIQSFQPKLIEGKAILLHP 482 Query: 452 LVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLY 511 LVC+A+NADFDGDQMAVH+PL+ EA LEA+ LM+++ NIL+PANG PI VPSQD+VLGLY Sbjct: 483 LVCSAFNADFDGDQMAVHLPLSNEAILEAKLLMLASQNILNPANGYPITVPSQDMVLGLY 542 Query: 512 YMTRDCVNA-----KGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAK 566 YMT++ + KGEGM + +E E Y + + +HA +KV++ E N L++K Sbjct: 543 YMTKELKSTYESKIKGEGMCFSSLEEVEIAYNNKVVEIHAIIKVKVKILE---NIGLISK 599 Query: 567 TSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMY 626 + TTVGR + ++VP + Y +N+ L K++ K++N + T F D+I Sbjct: 600 --IIKTTVGRVLFNIVVPPKVGY--INKLLTNKSLRKIINYILYNTNIPTTAKFLDKIKD 655 Query: 627 TGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIW 686 G+ +A + G S ++D+ IP++K ++ A +V+ +++ + GL+T ERYN++IDIW Sbjct: 656 LGYYHAFKGGLSFNLNDISIPKEKKSLVKRAIEKVSLVKDNYNLGLITNNERYNQIIDIW 715 Query: 687 AAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGL 746 N + TE VIN ++ KQ FNS+YMM DSGAR S QIRQL+GMRGL Sbjct: 716 TNTNVSL---------TEKVINY-MRKSKQ-GFNSVYMMLDSGARSSKEQIRQLSGMRGL 764 Query: 747 MAKPDGS------IIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRL 800 MAKP + IIE PI +NF EGL++L+YFISTHGARKGLADTALKTA++GYLTRRL Sbjct: 765 MAKPQKTSSLGSEIIENPILSNFLEGLSILEYFISTHGARKGLADTALKTADAGYLTRRL 824 Query: 801 VDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPR 860 VD AQD+++ EDDC T GI ++ V + + E L RVLGR+ ++ P ++L+ Sbjct: 825 VDSAQDVIIQEDDCKTLLGIKISAVKKKEKIIETLSSRVLGRIALNNIYDPTNNNVLIKS 884 Query: 861 NTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAA 920 + ++ E+ +L+E+ S+D ++VRS ++C + G+C CYGR+LA G +I KGEAIGVIAA Sbjct: 885 SQMIDEKNINLIEKASIDTIEVRSPLTCKSKTGICRKCYGRNLANGLMIQKGEAIGVIAA 944 Query: 921 QSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNT 980 QSIGEPGTQLT+RTFH+GG A S I+ K G I+ +++ V N ++ SR++ Sbjct: 945 QSIGEPGTQLTLRTFHVGGTAGNIYEYSKIKAKYDGIIEYEDIQVVKN-----LVISRSS 999 Query: 981 ELKLI----DEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVR 1036 E++L+ D+ K+ K+PYGA L + + V + + +WDP+ +I E +G +R Sbjct: 1000 EIRLLNNHKDKVILMKK--KIPYGAKLYVSNKQLVKKNDIICSWDPYNAVIIAEFTGKIR 1057 Query: 1037 FTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMP 1096 ++++ + DE TG + +ER P LKIV+ + N++L Sbjct: 1058 YSNI--------ERDEQTGFKVI-----SERKT------PTLKIVNKK-NEIL------- 1090 Query: 1097 AQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEAR 1148 Y +P A + + DG I+ G L +IP + + DITGGLPR+++LFEAR Sbjct: 1091 KSYNIPVGAHLVVNDGDIINEGSILIKIPIKDLKSGDITGGLPRLSELFEAR 1142 Score = 136 bits (343), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 82/187 (43%), Positives = 112/187 (59%), Gaps = 43/187 (22%) Query: 1218 HDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEG 1277 ++IL ++G+ A + ++NE+Q+VYR QGVKINDKH EVIVRQM +K I+ +G + FLEG Sbjct: 1242 NEILDIKGLRAAQKKLINEIQEVYRSQGVKINDKHFEVIVRQMTQKVEIIKSGDTSFLEG 1301 Query: 1278 EQVEYSRV------KIAN-RELEANGKVGATYS--------------------------R 1304 +EY+ V +I N + +E +G + R Sbjct: 1302 -NIEYTDVFLEENKRILNMKFIEESGDSKKFFKGQLVNFHELKKENYLLKLSNKNKILFR 1360 Query: 1305 DLL---------GITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGR 1355 D++ GITKA+L T+SF+SAASFQETT+VL EAA++ K D L GLKENVI+G Sbjct: 1361 DVITAISKPIIQGITKAALQTKSFLSAASFQETTKVLYEAAISNKTDYLNGLKENVILGN 1420 Query: 1356 LIPAGTG 1362 IPAGTG Sbjct: 1421 KIPAGTG 1427 >UniRef50_Q04E86 DNA-directed RNA polymerase subunit beta' n=228 Tax=cellular organisms RepID=RPOC_OENOB Length = 1233 Score = 1072 bits (2773), Expect = 0.0, Method: Compositional matrix adjust. Identities = 510/961 (53%), Positives = 689/961 (71%), Gaps = 51/961 (5%) Query: 16 EFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKY 75 +F++++I LASP IR WS+GEVKKPETINYRT K ERDGLF RIFGP+KDYEC CGKY Sbjct: 7 KFESMQIGLASPAKIREWSYGEVKKPETINYRTLKAERDGLFDERIFGPIKDYECACGKY 66 Query: 76 KRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDI 135 KR++++G++C++CGVEVT +KVRRERMGHIELA+P HIW+ K +PSR+GL+LDM R + Sbjct: 67 KRIRYKGIVCDRCGVEVTSSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLILDMSPRSL 126 Query: 136 ERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFG-DEFDAKMGAEAIQALLKSMDL 194 E ++YF SYVVI G T LE++Q++TE +Y +++G D FDAKMGAEAI+ LL +DL Sbjct: 127 EEIIYFASYVVINPGNTPLEKKQLITEAEYRQYQDQYGTDTFDAKMGAEAIKELLAEVDL 186 Query: 195 EQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVP 254 E++ ++L+ EL + + KR + +R+ ++EAF+QSGNKPEWM++ V+PV+PPDLRP+V Sbjct: 187 EKQAKELKNELKDATGQ-KRTRAVRRLDIVEAFIQSGNKPEWMVMDVVPVIPPDLRPMVQ 245 Query: 255 LDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGR 314 L+GGRFATSDLNDLYRRVINRNNRLKRLLDL AP IIV+NEKRMLQEAVDAL+DNGRRGR Sbjct: 246 LEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPGIIVQNEKRMLQEAVDALIDNGRRGR 305 Query: 315 AITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMAL 374 ++G RPLKSL+ ++KGKQGRFRQNLLGKRVDYSGRSVI VGP+L+++Q GLP++MA+ Sbjct: 306 PVSGPGNRPLKSLSHLLKGKQGRFRQNLLGKRVDYSGRSVIDVGPFLKMNQMGLPRQMAV 365 Query: 375 ELFKPFIYGKL-EL---RGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLH 430 ELFKPFIY +L EL G A +++A+ +VER E VV D+L+EV++EHPVLLNRAPTLH Sbjct: 366 ELFKPFIYNRLIELGTENGGANNLRSARCLVERHEDVVQDVLEEVVKEHPVLLNRAPTLH 425 Query: 431 RLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNI 490 RLGIQAFEPVL+ GKA++LHPLV AYNADFDGDQMA+HVPL+ EAQ EAR LM++ ++I Sbjct: 426 RLGIQAFEPVLVSGKAMRLHPLVTTAYNADFDGDQMAIHVPLSDEAQAEARLLMLAASHI 485 Query: 491 LSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKV 550 L+P +G+PI+ PSQD+ +G YY+T + KGEGM+ + E + ++ LH R+ + Sbjct: 486 LAPKDGKPIVAPSQDMTIGNYYLTTEEAGIKGEGMIFSSADEVKMALQNHEVELHTRIGI 545 Query: 551 RITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPY--------------------- 589 + ++K + + TTVG+ I I+P PY Sbjct: 546 AASSFDKAKPFTDHQRARIMVTTVGKVIFNEILPDDFPYINEPKSENFNGIDDRFFLDPG 605 Query: 590 ---------SIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVG 640 +N +S ++ Y + T + D + G+ + RSG +V Sbjct: 606 TDIVGWFKNESLNGPFKSGFLSDIIAQIYARYQVTRTSVLLDDMKDLGYDISTRSGLTVA 665 Query: 641 IDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDN 700 + D+ +K E++ EA +VA+I +QF+ GL+T ERY +V W+ A D++ ++ + Sbjct: 666 MSDVTELPEKGEVLKEAHEKVAKITKQFRRGLLTDDERYIQVTQTWSDAQDKIKSMLIAS 725 Query: 701 LQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIT 760 ++ N I+MM+DSGARG+ + QLAGMRGLMA P+G +IE P+T Sbjct: 726 FDSK---------------NPIFMMSDSGARGNISNFVQLAGMRGLMAAPNGKVIELPVT 770 Query: 761 ANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGI 820 ANFREGL+VL+ FISTHGARKG+ DTALKTANSGYLTRRLVDVAQ+++V E+DCGT G+ Sbjct: 771 ANFREGLSVLEMFISTHGARKGMTDTALKTANSGYLTRRLVDVAQEVIVREEDCGTDRGL 830 Query: 821 MMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAV 880 ++ +++G +V EPL DR+LGR + V+ P T +++ +N ++ E D + + + V Sbjct: 831 DVSAIMDGNEVIEPLYDRILGRYAMKPVIDPKTGEVIAKKNQMIDEHVADQIIDAGIQTV 890 Query: 881 KVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGA 940 +RS+ +C T+ GVC CYGR++A G I+ GEA+G +AAQSIGEPGTQLTMRTFH GG Sbjct: 891 TIRSIFTCRTEHGVCVKCYGRNMATGDIVEVGEAVGTVAAQSIGEPGTQLTMRTFHTGGV 950 Query: 941 A 941 A Sbjct: 951 A 951 Score = 213 bits (543), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 117/252 (46%), Positives = 165/252 (65%), Gaps = 5/252 (1%) Query: 1131 TKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMI 1190 ++DIT GLPRV ++FEAR PK A ++E++G V+ +E R +T +D E ++ Sbjct: 953 SEDITQGLPRVQEIFEARNPKGRAEISEVTGKVTSIEENPADRTKTVTIEGETDTREYVL 1012 Query: 1191 PKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKIND 1250 P +L V EG+ + R + I++GP P +++++ Y++ EVQ VYR+QGV I D Sbjct: 1013 PISARLRVAEGDEIHRSEAINEGPLDPKELIKVSSTLKTENYMLAEVQKVYRMQGVGIAD 1072 Query: 1251 KHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGIT 1310 KH+EV+VRQMLRK +++ G +D L GE ++ + + AN + +G+ AT LLGIT Sbjct: 1073 KHVEVMVRQMLRKVRVMDPGQTDLLPGELLDIADFRRANAKTILSGQTAATSRPVLLGIT 1132 Query: 1311 KASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRM 1370 KASL T SF+SAASFQETTRVLT+AA+ GK D L GLKENVI+G++IPAGTG A + Sbjct: 1133 KASLETNSFLSAASFQETTRVLTDAAIRGKNDPLVGLKENVIIGKVIPAGTGVAEY---- 1188 Query: 1371 RRRAAGEAPAAP 1382 R E AAP Sbjct: 1189 -RHIKDEVVAAP 1199 >UniRef50_UPI0001C379E7 DNA-directed RNA polymerase subunit beta'''' n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C379E7 Length = 1237 Score = 1066 bits (2756), Expect = 0.0, Method: Compositional matrix adjust. Identities = 542/1075 (50%), Positives = 729/1075 (67%), Gaps = 108/1075 (10%) Query: 17 FDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYK 76 F++IKI LASP+ IRSWS+G V++PETINYRT KPERDGLFC RIFGP KD+EC CGK+K Sbjct: 6 FESIKIGLASPEQIRSWSYGVVERPETINYRTQKPERDGLFCERIFGPTKDWECHCGKFK 65 Query: 77 RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIE 136 +++ +G +C++CGVEVT+ +VRRERMGHIELA+P +HIW+ K PSRIG +L++ + +E Sbjct: 66 KIRFKGKVCDRCGVEVTRARVRRERMGHIELAAPVSHIWYFKGTPSRIGQVLEVSQKRLE 125 Query: 137 RVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMD--- 193 VLYF Y+V + G T L ++Q+L+E++YL LE++GD+F A+MGAEAI+ LL D Sbjct: 126 EVLYFTKYIVTDPGNTELLKKQLLSEKEYLSYLEKYGDDFKAEMGAEAIRKLLNEYDPAR 185 Query: 194 ---------------------------LEQECEQLRE----------------------E 204 E +CE+ R+ E Sbjct: 186 YDTHKQRLIEMGKVSLGGKKITCFNKPTECDCEECRKFAELEGIDWRNNLEIVADDLKAE 245 Query: 205 LNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSD 264 L + K+ KL KR++++EAF SGNKPEWMIL+V+PV+PPD+RP++ LDGGR+ATSD Sbjct: 246 LEGLPAGQKKVKLLKRLQIIEAFRLSGNKPEWMILSVVPVIPPDIRPMIMLDGGRYATSD 305 Query: 265 LNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPL 324 LNDLYRRVINRNNRLKR+L+L APDIIVRNEKRMLQEAVDAL+DNGR +TG + R L Sbjct: 306 LNDLYRRVINRNNRLKRMLELDAPDIIVRNEKRMLQEAVDALIDNGR---PVTGPSNRAL 362 Query: 325 KSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGK 384 KSL+DM+KGKQGRFRQNLLGKRVDYSGRSVI VGP L+++QCGLPK+MALELFKPF+ + Sbjct: 363 KSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKMYQCGLPKEMALELFKPFVLKR 422 Query: 385 LELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEG 444 L + IK+A+K+++R + VWD L++VI++HPV+LNRAPTLHRLGIQAFEP+L+EG Sbjct: 423 LVDKKAIANIKSARKLIDRADNKVWDALEDVIKDHPVMLNRAPTLHRLGIQAFEPILVEG 482 Query: 445 KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQ 504 +AI+LHPLVC+A+NADFDGDQMAVH+PL+ EAQ EAR LM++ NN+L P++G+P+ VPSQ Sbjct: 483 RAIKLHPLVCSAFNADFDGDQMAVHLPLSAEAQAEARFLMLAANNLLKPSDGKPVAVPSQ 542 Query: 505 DVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELV 564 D+VLG YY+T GEG V E Y SLHA +KV+IT KD + V Sbjct: 543 DMVLGSYYLTMAKPGEPGEGKVFRDVNEVLMAYNEHDVSLHANIKVKIT---KDIGDKKV 599 Query: 565 AKTSLKDTTVGRAILWMIVPKGLPYSIVNQA-----------LGKKAISKMLNTCYRILG 613 +K + D TVGR I +P+ L Y + +GKK +S ++ C +I G Sbjct: 600 SK--IIDATVGRLIFNENIPQNLGYVDRTNSDKQFDLEVAFLVGKKQLSDIIERCIKIHG 657 Query: 614 LKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLV 673 T D+I G+ Y+ R+ +V + D IP +K I++EA+AEV +I +++ G + Sbjct: 658 TTTTSEVLDRIKALGYKYSTRAALTVAVCDATIPPQKKAILAEADAEVEQITNEYEYGYI 717 Query: 674 TAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGS 733 +A E+ K+I +W D V+K + +N +N I+MMADSGARGS Sbjct: 718 SAQEKTKKIIALWTNTTDEVTKKLKENFD---------------RYNPIWMMADSGARGS 762 Query: 734 AAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANS 793 +QIRQLAGMRGL+A G++IE PI AN+REGLN+L+YFI++ GARKGLADTAL+TA+S Sbjct: 763 ISQIRQLAGMRGLIANTSGTVIEIPIRANYREGLNILEYFIASRGARKGLADTALRTADS 822 Query: 794 GYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGT 853 GYLTRRLVDV+QD+++ E+DCGT +GI + + G +V EP +R++GR AED+ T Sbjct: 823 GYLTRRLVDVSQDVIIREEDCGTTDGIEVFEIRNGNEVVEPFDERLVGRFLAEDLRDEAT 882 Query: 854 ADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGE 913 ++++ RN L+ + + + V+ +K+RSV++C GVCA CYG +LA +I++ GE Sbjct: 883 GELIMSRNKLITDADAKKILDAGVEEIKIRSVLTCRAKTGVCAKCYGANLAFNNIVSVGE 942 Query: 914 AIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQ-----------VKNKGSIKLSN 962 A+GVIAAQSIGEPGTQLTMRTFH GG AS A AE Q + KG+ LS Sbjct: 943 AVGVIAAQSIGEPGTQLTMRTFHTGGVAS-ADAEDITQGLPRVEELFESRRPKGAAILSR 1001 Query: 963 VKSVVNSSGKLVITSRNTELKLI---DEFGRTKESYKVPYGAVLAKGDGEQVAGG 1014 + SGK+ I T +I DE G + E+Y +PY + +GE++ G Sbjct: 1002 I------SGKIHIEEIKTTTNIIVTNDETGES-ENYMIPYNLKIRVQEGEEIEKG 1049 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 128/263 (48%), Positives = 168/263 (63%), Gaps = 9/263 (3%) Query: 1128 SGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYE 1187 S +DIT GLPRV +LFE+RRPK AIL+ ISG + +E K +++T + + Sbjct: 971 SADAEDITQGLPRVEELFESRRPKGAAILSRISGKIHI-EEIKTTTNIIVTNDETGESEN 1029 Query: 1188 EMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVK 1247 MIP ++ V EGE +E+G +++G P DIL + G AV YI+NEVQ VYRLQGV Sbjct: 1030 YMIPYNLKIRVQEGEEIEKGTRLTEGNIYPADILNILGTKAVQNYIINEVQKVYRLQGVD 1089 Query: 1248 INDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVG------AT 1301 INDKHIEVIVRQMLRK + +GSS L G V+ ++ N EL+A G Sbjct: 1090 INDKHIEVIVRQMLRKVKVEESGSSYLLPGTLVDSKKIDEINEELQARIDAGEYDVQLVQ 1149 Query: 1302 YSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGT 1361 S L GITKAS ++SF+SAASFQETT+ LT+AA++GK D L GLKENVI+G+LIPAGT Sbjct: 1150 ISPVLQGITKASSNSDSFMSAASFQETTKALTDAAISGKSDRLLGLKENVIIGKLIPAGT 1209 Query: 1362 GYAYHQD--RMRRRAAGEAPAAP 1382 G +++ ++ E AAP Sbjct: 1210 GMECYRNVEVVKNEGYTEHQAAP 1232 >UniRef50_A8YXJ9 DNA-directed RNA polymerase subunit beta' n=25 Tax=Firmicutes RepID=RPOC_LACH4 Length = 1217 Score = 1033 bits (2671), Expect = 0.0, Method: Compositional matrix adjust. Identities = 516/1063 (48%), Positives = 715/1063 (67%), Gaps = 72/1063 (6%) Query: 16 EFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKY 75 +F++++I LASP+ IRSWS+GEVKKPETINYRT KPE+DGLF RIFGP KD+ C CGKY Sbjct: 6 KFESMQIGLASPNKIRSWSYGEVKKPETINYRTLKPEKDGLFDERIFGPTKDWSCACGKY 65 Query: 76 KRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDI 135 K +++RG++C++CGVEVT +KVRRERMGHIELA+P HIW+ K +PSR+GL+LD+ + + Sbjct: 66 KGVRYRGIVCDRCGVEVTSSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLVLDISPKLL 125 Query: 136 ERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLE 195 E V+YF +Y+VI+ G T+LE +Q+LTE +Y + ++G+ F+AKMGAEAI+ LLK +DL+ Sbjct: 126 EEVIYFAAYIVIDPGDTDLEPKQLLTEAEYREQKAKYGNRFEAKMGAEAIRELLKKVDLD 185 Query: 196 QECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPL 255 +E + L++EL +T + KR + +R+ +L+ F SGNKPEWM++ +PV+PPDLRP+V L Sbjct: 186 KEVKDLKKEL-QTATGQKRTRAIRRLDILDTFKNSGNKPEWMVMDAVPVIPPDLRPMVQL 244 Query: 256 DGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRA 315 +GGRFATSDLNDLYRRVINRNNRLKRLLDL AP+IIV+NEKRMLQEAVDAL+DNGRRGR Sbjct: 245 EGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPNIIVQNEKRMLQEAVDALIDNGRRGRP 304 Query: 316 ITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALE 375 + G RPLKSL+ M+KGKQGRFRQNLLGKRVDYSGRSVI V P L+ +QCG+P+ MALE Sbjct: 305 VVGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVSPKLKFYQCGVPRPMALE 364 Query: 376 LFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQ 435 LFKPF+ +L RG+A+ IK AK+ ++ E+ +WD+L++VI+E PVLLNRAPTLHRL IQ Sbjct: 365 LFKPFVMHELVKRGIASNIKNAKRKIDSEDDDIWDVLEDVIKERPVLLNRAPTLHRLSIQ 424 Query: 436 AFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPAN 495 AFEPVL+ GK+I+LHPL C AYNADFDGDQMA+HVPL+ EA E+R LM++ ++IL+P + Sbjct: 425 AFEPVLVPGKSIRLHPLACEAYNADFDGDQMAIHVPLSDEAVAESRLLMLAAHHILAPKD 484 Query: 496 GEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEY 555 G+PI+ PSQD+VLG Y++T+ +GEGM+ + P EA Y +G H + + Sbjct: 485 GKPIVTPSQDIVLGNYWLTQAERGREGEGMIFSSPAEATVAYENGDIHYHTIIGMSADAM 544 Query: 556 EKDANGELVAKTSLKDTTVGRAILWMIVPKGLPY-------------------------- 589 K + + + TT G+ + + P Y Sbjct: 545 PKKPWPQ-GHEHGIFITTYGKLVFNQLFPDDYFYINEPTEENLNNPLDAKYFLGEGQDIH 603 Query: 590 --------SIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGI 641 ++ +S + T Y+ ++ T + D + G+ + SG ++G+ Sbjct: 604 DKIDEVGDDLIATPFKSSFLSDSIATIYKYYKVQRTSEYLDDLKKLGYTSSTTSGITIGM 663 Query: 642 DDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNL 701 +D+ + K E +++A +V + +QF+ GL+T ER+++VI IW A D + + Sbjct: 664 NDVPEIKDKDEKVAKARKQVDIVSKQFRRGLITEQERHDRVISIWNACKDEIQNEIA--- 720 Query: 702 QTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITA 761 + N I +MADSGARG+ + QLAGMRGLMA P+G + E P+T+ Sbjct: 721 ------------QIHSPRNPISIMADSGARGNISNFTQLAGMRGLMATPNGGLFEIPVTS 768 Query: 762 NFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIM 821 NF+EGL+VL+ F+STHGARKG+ DTALKTA SGYLTRRLVDVAQD+++ +DDCGT GI Sbjct: 769 NFKEGLSVLELFMSTHGARKGMTDTALKTAQSGYLTRRLVDVAQDVIIRDDDCGTDRGIT 828 Query: 822 MTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVK 881 ++ ++EG ++ EPL DR++GR TAE V P T + +V R+ ++ E + + V VK Sbjct: 829 VSAIMEGDEMIEPLFDRLVGRFTAETVKDPKTGEAIVGRDVMMDENMAHKICDAGVTHVK 888 Query: 882 VRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAA 941 +RS+++CDT GVC CYG +LA G + GEA+G +AAQSIGEPGTQLT+RTFH GG Sbjct: 889 IRSILTCDTPHGVCRKCYGMNLATGEEVEVGEAVGTVAAQSIGEPGTQLTLRTFHNGGV- 947 Query: 942 SRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDE--FGRTKE------ 993 A AE Q G ++ + N G+ I+ + + I E T+E Sbjct: 948 --AGAEDITQ----GLPRVQELFEARNPKGRATISEVDGVIDSIQENPADHTREITVKGK 1001 Query: 994 ----SYKVPYGAVLAKGDGEQVAGGE--TVANWDPHTMPVITE 1030 SY VPY A +A +G+ V G+ T+ + DP + +T+ Sbjct: 1002 IDTRSYSVPYTASVAVSEGDYVHRGDKLTLGSVDPKELIQVTD 1044 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 106/240 (44%), Positives = 154/240 (64%) Query: 1129 GGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEE 1188 G +DIT GLPRV +LFEAR PK A ++E+ G++ +E IT D Sbjct: 948 AGAEDITQGLPRVQELFEARNPKGRATISEVDGVIDSIQENPADHTREITVKGKIDTRSY 1007 Query: 1189 MIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKI 1248 +P + V EG+ V RGD ++ G P +++++ +YI+ EVQ YR+QGV I Sbjct: 1008 SVPYTASVAVSEGDYVHRGDKLTLGSVDPKELIQVTDTLTTEKYILAEVQKAYRMQGVDI 1067 Query: 1249 NDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLG 1308 DKH+EV+ RQML+K +++ G +D L GE ++ + + N+E+ +G + AT +LG Sbjct: 1068 ADKHVEVLTRQMLQKVRVLDPGETDILPGEVMDIGQFRDRNKEVIISGGIPATAQSVILG 1127 Query: 1309 ITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD 1368 ITKA+L T SF+SAASFQETTRVLT+A++ GK D L GLKENVI+G++IPAGTG +++ Sbjct: 1128 ITKAALETNSFLSAASFQETTRVLTDASIRGKNDPLLGLKENVIIGKIIPAGTGMPVYRN 1187 >UniRef50_C4ZB95 DNA-directed RNA polymerase n=5 Tax=Firmicutes RepID=C4ZB95_EUBR3 Length = 1282 Score = 992 bits (2565), Expect = 0.0, Method: Compositional matrix adjust. Identities = 536/1096 (48%), Positives = 722/1096 (65%), Gaps = 107/1096 (9%) Query: 16 EFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKY 75 +FDAI+I LASP+ IR WS GEVKKPETINYRT KPE+DGLFC +IFGP KD+EC CGKY Sbjct: 14 QFDAIQIGLASPEKIREWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTKDWECHCGKY 73 Query: 76 KRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDI 135 K+++++GV+C++CGVE+T++ VRRERMGHIELA+P +HIW+ K +PSR+GL+LD+ R + Sbjct: 74 KKIRYKGVVCDRCGVEITKSSVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDLSPRVL 133 Query: 136 ERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFG-DEFDAKMGAEAIQALLKSMDL 194 ERVLYF SY+V++ G T L +QIL E +Y +A + +G F MGAE+I+ LL ++DL Sbjct: 134 ERVLYFASYIVLDPGETKLAYKQILNESEYQEACDTYGRSAFRVGMGAESIRELLAAIDL 193 Query: 195 EQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVP 254 E++ +L+ EL E + KR ++ KR++++EAF +SGNKPEWMI+TV+PV+PPDLRP+V Sbjct: 194 EKDSAELKAEL-ENATGQKRARIIKRLEVVEAFRESGNKPEWMIMTVIPVIPPDLRPMVQ 252 Query: 255 LDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGR 314 LDGGRFATSDLNDLYRR+INRNNRL+RLLDL APDIIVRNEKRMLQEAVDAL+DNGRRGR Sbjct: 253 LDGGRFATSDLNDLYRRIINRNNRLRRLLDLGAPDIIVRNEKRMLQEAVDALIDNGRRGR 312 Query: 315 AITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMAL 374 +TG R LKSL+DM+KGK GRFRQNLLGKRVDYSGRSVI V P L+++QCGLPK+MA+ Sbjct: 313 PVTGPGNRALKSLSDMLKGKGGRFRQNLLGKRVDYSGRSVICVEPKLKIYQCGLPKEMAI 372 Query: 375 ELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGI 434 ELFKPF+ +L G A IK+AKKMVER + VWD+L++VI+EHPV+LNRAPTLHRLGI Sbjct: 373 ELFKPFVMKELAANGTAHNIKSAKKMVERLQPEVWDVLEDVIKEHPVMLNRAPTLHRLGI 432 Query: 435 QAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPA 494 QAFEP+L+EGKAI+LHPLVC A+NADFDGDQMAVH+PLT EAQ E R +++S NN+L P+ Sbjct: 433 QAFEPILVEGKAIKLHPLVCTAFNADFDGDQMAVHLPLTAEAQAECRFMLLSPNNLLKPS 492 Query: 495 NGEPIIVPSQDVVLGLYYMT------------------RDCV-NAKGEGMVLTGPKEAER 535 +G + VPSQD++LG+YY+T D V N E LT P E Sbjct: 493 DGGLVAVPSQDMILGVYYLTMRKLADYKDDPKMVAQVSSDTVYNDVDELRKLTTPDENTG 552 Query: 536 LYRSGLASL------------------------HARVKVRITEYE--------------- 556 GL L + V + + YE Sbjct: 553 KAELGLYDLIWFEDVTDGNRRVLCRPIDLLGRYYGSVNLAMLAYENKEITLHQNIFVHRT 612 Query: 557 -KDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQA-----------LGKKAISKM 604 K A+G V + +TTVG I +P+ L + ++A +GKK I ++ Sbjct: 613 VKLADGTEV--SGFTETTVGLLIFNENIPQDLGFIDRSKAENALKFEVEFHVGKKQIKQI 670 Query: 605 LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEI 664 L G T D + G+ Y+ ++ +V I DM +P +K ++I++A+ V +I Sbjct: 671 LEKVINTHGATTTAEVLDNVKAMGYKYSTQAAMTVSISDMTVPPQKPQMIADAQDTVDKI 730 Query: 665 QEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 724 Q++ GL+T ERY +VI+ W +D ++KA++ L +N+I+M Sbjct: 731 TRQYKRGLITDEERYKEVIETWKDTDDALTKALLTGLD---------------KYNNIFM 775 Query: 725 MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA 784 MADSGARGS QI+QLAGMRGLMA G IE PI + FREGL+VL+YF+S HGARKGL+ Sbjct: 776 MADSGARGSDKQIKQLAGMRGLMADTTGRTIELPIKSCFREGLDVLEYFMSAHGARKGLS 835 Query: 785 DTALKTANSGYLTRRLVDVAQDLVVTEDDC--GTHE---GIMMTPVIEGGDVKEPLRDRV 839 DTAL+TA+SGYLTRRLVDV+Q ++V E DC GT G+++ +EG + E L++R+ Sbjct: 836 DTALRTADSGYLTRRLVDVSQHMIVRETDCCAGTGREIPGMVVKAFMEGREEIESLQERI 895 Query: 840 LGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEE------NSVDAVKVRSVVSCDTDFG 893 GR + + I+ + + ++ ++ E N + VK+R+V++C + G Sbjct: 896 TGRFSCNTICDKDGNVIVKANHMITPKRAAKVMAEGVDENGNPITQVKIRTVLTCRSHMG 955 Query: 894 VCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVK 953 VCA CYG +LA G + GEAIG+IAAQSIGEPGTQLTMRTFH GG A + +V+ Sbjct: 956 VCAKCYGSNLATGQAVQVGEAIGIIAAQSIGEPGTQLTMRTFHTGGVAGGDITQGLPRVE 1015 Query: 954 NKGSI-KLSNVKSVVNSSGKLVITSRNTELKLI---DEFGRTKESYKVPYGAVLAKGDGE 1009 K + + G I + ++I +E G TK +Y +PYG+ + DG+ Sbjct: 1016 EIFEARKPKGLAIITEFGGTATIKDTKKKREVIVTNNETGETK-AYLIPYGSRIKVVDGQ 1074 Query: 1010 QVAGGE--TVANWDPH 1023 ++ G+ T + +PH Sbjct: 1075 ELEAGDELTEGSVNPH 1090 Score = 223 bits (568), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 124/236 (52%), Positives = 165/236 (69%), Gaps = 1/236 (0%) Query: 1133 DITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPK 1192 DIT GLPRV ++FEAR+PK AI+ E G + K+TK KR +++T + + +IP Sbjct: 1006 DITQGLPRVEEIFEARKPKGLAIITEFGGTATI-KDTKKKREVIVTNNETGETKAYLIPY 1064 Query: 1193 WRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKH 1252 ++ V +G+ +E GD +++G PHDIL+++GV AV Y++ EVQ VYRLQGV+INDKH Sbjct: 1065 GSRIKVVDGQELEAGDELTEGSVNPHDILKIKGVRAVQDYMLREVQRVYRLQGVEINDKH 1124 Query: 1253 IEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKA 1312 +EVIVRQ L+K + G SD L G V+ N +LE GK A S+ LLGITKA Sbjct: 1125 VEVIVRQCLQKIRVEEPGDSDLLPGSMVDALDFLELNEKLEEEGKELAVGSQVLLGITKA 1184 Query: 1313 SLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD 1368 SLAT SF+SAASFQETT+VLTEAA+ GK D L G+KENVI+G+LIPAGTG +++ Sbjct: 1185 SLATNSFLSAASFQETTKVLTEAAIKGKVDPLIGMKENVIIGKLIPAGTGMKIYRN 1240 >UniRef50_Q3ZX00 DNA-directed RNA polymerase subunit beta' n=5 Tax=Dehalococcoides RepID=RPOC_DEHSC Length = 1295 Score = 990 bits (2560), Expect = 0.0, Method: Compositional matrix adjust. Identities = 530/1220 (43%), Positives = 745/1220 (61%), Gaps = 135/1220 (11%) Query: 12 TKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECL 71 + +FDAI+I+LASPD IRSWS+GEV KPETINYRT KPERDGLFC RIFGP+KD+EC Sbjct: 2 NEVNDFDAIRISLASPDQIRSWSYGEVTKPETINYRTLKPERDGLFCERIFGPIKDFECA 61 Query: 72 CGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMP 131 CGKYKR++++G+IC+KCGVE+ + KVRRERMGHIELA P HIWF + +PSR+GLLL++ Sbjct: 62 CGKYKRIRYKGIICDKCGVEIARAKVRRERMGHIELACPVGHIWFTRGIPSRVGLLLNLS 121 Query: 132 LRDIERVLYFESYVVI------------------------EGGMTNLERQQILTEEQYLD 167 R +ER++Y+ +++ +G + Q+ E+ ++ Sbjct: 122 TRSLERIIYYSHFIITAVNDDAREKAIKDLEVISSQRVADKGSEVDTRVAQMEAEDATVE 181 Query: 168 ALEEFGDEF--DAKMGAEAIQALLKSM---------------DLEQE----------CEQ 200 A+ + +F + + E IQ L+ + +L+Q E Sbjct: 182 AINQIRRDFSTEREQMEEDIQLLIDQLKDLQKGNLLTENQYYELKQRFSNVFEASMGAEA 241 Query: 201 LREELNETNSETKRKKLT---------------KRIKLLEAFVQSGNKPEWMILTVLPVL 245 L + L+ + + +R KL K+++L+EAF +S NKPEWMI+TVLPVL Sbjct: 242 LLKLLSYIDMDKERSKLIQETRSTSGQRRKKAGKQLQLVEAFRRSSNKPEWMIMTVLPVL 301 Query: 246 PPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDA 305 PPDLRP+V LDGGRFATSDLNDLYRRVINRNNRL+ L+++ AP+II+RNEKRMLQEAVD+ Sbjct: 302 PPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLQHLMEIGAPEIIIRNEKRMLQEAVDS 361 Query: 306 LLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQ 365 L+DNGRRG+++ + KSL+D+++GKQGRFRQNLLGKRVDYSGRSVI VGP L+L Q Sbjct: 362 LIDNGRRGKSVAVNGDHKAKSLSDLLRGKQGRFRQNLLGKRVDYSGRSVIVVGPSLKLSQ 421 Query: 366 CGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNR 425 CGLP++MALELFKPF+ +L GLA IK+A+++VER V+DIL+EV+++ PVLLNR Sbjct: 422 CGLPRRMALELFKPFVMHRLVRDGLAPNIKSARRLVERARPEVYDILEEVVKDRPVLLNR 481 Query: 426 APTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMM 485 APTLHRL IQAFEPVLI+G A++LHPLVC+A+NADFDGDQMAVHVPL+ A EAR M+ Sbjct: 482 APTLHRLSIQAFEPVLIDGSALRLHPLVCSAFNADFDGDQMAVHVPLSKAAVKEARETML 541 Query: 486 STNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLH 545 S +N++ P++GEP++ PS D+V G YY+T AKGEG + +EA+R Y G+ L Sbjct: 542 SIHNMMLPSSGEPVVSPSLDMVFGCYYLTTTRPGAKGEGKIFGDFEEAKRYYEMGIIDLR 601 Query: 546 ARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKML 605 A +KVR D G ++ +TT GR I ++PK + + N + K AI K++ Sbjct: 602 AIIKVR------DGKGNML------ETTTGRIIFNDVLPKAVEFQ--NMDIPKSAIKKII 647 Query: 606 NTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQ 665 CY+IL + + D+I GF +A SG S+ + D+ +P +K ++++ A+ A + Sbjct: 648 GRCYKILSSQDMAVMLDKIKELGFKFATSSGISIAMSDISVPREKTKLVAAADERTAIAE 707 Query: 666 EQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMM 725 QF GL+T ERYN +I+ W DR++ A+ +KQ S+YMM Sbjct: 708 GQFARGLITEDERYNSIIETWMETTDRITDAIQAGF------------DKQ---GSVYMM 752 Query: 726 ADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLAD 785 A+SGA+G+ +QIRQ+AG+RGLM P G II+ PI ++ REGL L+YFISTHGARKGLAD Sbjct: 753 ANSGAKGNISQIRQMAGLRGLMTNPSGRIIDFPIKSSLREGLTALEYFISTHGARKGLAD 812 Query: 786 TALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTA 845 TAL+T+ SGYLTRRL+DV QD+++ ++DCGT G + E G + PL DR+LGR TA Sbjct: 813 TALRTSGSGYLTRRLIDVTQDVIILQEDCGTANGTWIIEPKEKG-MLPPLVDRILGRWTA 871 Query: 846 EDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLAR 905 +V+ P T +I+V N + E + E + V VRS ++C++ G+C CYGRDL R Sbjct: 872 HNVVHPQTGEIIVDNNEEIDEIKAKAIGEAGITEVFVRSPLTCESTHGMCRRCYGRDLGR 931 Query: 906 GHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKS 965 +++ A+G+IAAQSIGEPGTQLT+RTFH GG +V+ + V+S Sbjct: 932 VRLVDMNTAVGIIAAQSIGEPGTQLTLRTFHTGGVVGVDITTGLPRVEELFEARPPKVQS 991 Query: 966 VVNSSGKLVITSRNTELKLI----DEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWD 1021 +++ +V N + I DE ++ Y++P G + V G +A+ Sbjct: 992 IISEIDGVVEVIENENGRHIRIASDEV--YQDEYELPSGWKTQVQSRQWVDSGMVLAS-- 1047 Query: 1022 PHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAE--------------R 1067 E+ G + D + R E+T +L+ + +E + Sbjct: 1048 -------PELEGKSKAVVQSDQNVVARVAGEVTVEGNLITIKYSESEEREYTIPAAMQIK 1100 Query: 1068 TAGGKDLRPALKIVDAQGN--DVL-IPGTDMPAQYFLPGKAIVQLEDGVQIS-------S 1117 G +R ++ D N D+L I G D +Y + V GV I+ + Sbjct: 1101 VKTGDTIRAGQQLTDGSINPQDILSILGRDAVQKYLVEEVQKVYYSQGVHINDKHIEVIA 1160 Query: 1118 GDTLARIPQESGGTKDITGG 1137 L ++ +S G D+ G Sbjct: 1161 RQMLIKVRIDSSGDTDLVPG 1180 Score = 179 bits (455), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 119/293 (40%), Positives = 157/293 (53%), Gaps = 66/293 (22%) Query: 1133 DITGGLPRVADLFEARRPKEPAILAEI--------------------------------- 1159 DIT GLPRV +LFEAR PK +I++EI Sbjct: 970 DITTGLPRVEELFEARPPKVQSIISEIDGVVEVIENENGRHIRIASDEVYQDEYELPSGW 1029 Query: 1160 -----------SGIVSFGKETKGKRRLVI-------------TPVDG---------SDPY 1186 SG+V E +GK + V+ V+G S+ Sbjct: 1030 KTQVQSRQWVDSGMVLASPELEGKSKAVVQSDQNVVARVAGEVTVEGNLITIKYSESEER 1089 Query: 1187 EEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGV 1246 E IP Q+ V G+ + G ++DG P DIL + G AV +Y+V EVQ VY QGV Sbjct: 1090 EYTIPAAMQIKVKTGDTIRAGQQLTDGSINPQDILSILGRDAVQKYLVEEVQKVYYSQGV 1149 Query: 1247 KINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDL 1306 INDKHIEVI RQML K I ++G +D + GE V+ R + N ++ A G AT L Sbjct: 1150 HINDKHIEVIARQMLIKVRIDSSGDTDLVPGELVDKFRYEDINAKVLAEGGEPATAHTVL 1209 Query: 1307 LGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPA 1359 +GIT+ASL+TES+++AASFQETTRVLT+AA+ G+ D+L GLKENVI+G+LIPA Sbjct: 1210 MGITRASLSTESWLAAASFQETTRVLTDAAIYGRVDKLSGLKENVIIGKLIPA 1262 >UniRef50_UPI00016BFCAD DNA-directed RNA polymerase, beta'''' subunit n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016BFCAD Length = 1244 Score = 978 bits (2529), Expect = 0.0, Method: Compositional matrix adjust. Identities = 483/884 (54%), Positives = 634/884 (71%), Gaps = 58/884 (6%) Query: 17 FDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYK 76 F+ IKI LASPD IR WS GEVKKPETINYRT +PER+GLFC +IFGP KD+EC CGKYK Sbjct: 9 FENIKIGLASPDKIRQWSRGEVKKPETINYRTQRPEREGLFCEKIFGPSKDWECHCGKYK 68 Query: 77 RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIE 136 R++++GVIC++CGVE+T+ KVRRERMGHIELA+P +HIW+ K +PS++GL+LD+ R +E Sbjct: 69 RIRYKGVICDRCGVEITRAKVRRERMGHIELAAPVSHIWYFKGIPSKMGLILDIAPRILE 128 Query: 137 RVLYFESYVVIEGGMTNLERQ-----QILTEEQYLDALEEFGDE---------FDAKMGA 182 ++LYF SY++ +R+ Q+LTE+++ + + DE F A+MGA Sbjct: 129 KILYFASYIITYVSSEYEKREGISYKQVLTEKEFQEVDRRYNDEARERDGTVAFVAEMGA 188 Query: 183 EAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVL 242 EAI+ LL+ +DLE+E E L+ +L + + KR ++ KR++++E+F +G+KPEWMIL V+ Sbjct: 189 EAIKKLLQDIDLEKESETLKTQLVDATGQ-KRIRIIKRLEVIESFRLAGSKPEWMILDVI 247 Query: 243 PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEA 302 PVLPPDLRP++ LDGGRFATSDLNDLYRRVINRNNRLKRL+DL AP+IIVRNEKRMLQEA Sbjct: 248 PVLPPDLRPMIQLDGGRFATSDLNDLYRRVINRNNRLKRLVDLGAPNIIVRNEKRMLQEA 307 Query: 303 VDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLR 362 VDAL+DNGRRGR +TG RPLKSL+DM+KGK GRFRQNLLGKRVDYSGRSVI VGPYL+ Sbjct: 308 VDALIDNGRRGRPVTGPGNRPLKSLSDMLKGKSGRFRQNLLGKRVDYSGRSVIVVGPYLK 367 Query: 363 LHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVL 422 ++QCGLPK+MA+ELFKPF+ KL G+A IK AK M+E + +WD+L+EVI+EHPV+ Sbjct: 368 IYQCGLPKEMAIELFKPFVMKKLVSDGIAQNIKNAKNMIESLKTEIWDVLEEVIKEHPVM 427 Query: 423 LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARA 482 LNRAPTLHRLGIQAFEP L+EG+A++LHPLVCAAYNADFDGDQMAVHVPL++EAQ E R Sbjct: 428 LNRAPTLHRLGIQAFEPTLVEGRALKLHPLVCAAYNADFDGDQMAVHVPLSVEAQTECRF 487 Query: 483 LMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLA 542 L+++ NN+L P++G P+ VPSQD+VLG+YY+T D +GEG EA + Sbjct: 488 LLLAPNNLLKPSDGAPVAVPSQDMVLGMYYLTLDRAGEEGEGRYFKDENEAILAXETKEI 547 Query: 543 SLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGL-------PYSI---- 591 SLHA++KVR T + NG+ + T + DTTVGR +P+ L P S Sbjct: 548 SLHAKIKVRRT---VEFNGQ--SLTGMTDTTVGRIFFNEAIPQDLGFVKRISPESALKYE 602 Query: 592 VNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKH 651 ++ +GKK + +++ G T I D I GF ++ R +V + DMVIPE+K Sbjct: 603 IDFLVGKKQLGQIIKKSINTHGATKTAILLDSIKDLGFKFSTRGALTVSVSDMVIPERKK 662 Query: 652 EIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDG 711 E ++EAE V ++ F+ GL+T ERYNKVI W AAND++++A++ L Sbjct: 663 EFLAEAEKSVDQVTRLFRRGLMTDEERYNKVIQSWNAANDKITEALLSGLG--------- 713 Query: 712 QEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQ 771 +N+I+MMADSGARGS QI+QLAGMRGLMA P G IIE PI ANFREGL VL+ Sbjct: 714 ------RYNNIFMMADSGARGSNNQIKQLAGMRGLMASPSGRIIELPIKANFREGLTVLE 767 Query: 772 YFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCG--THEGIMMTPVIEGG 829 YFIS HGARKGLADTALKTA+SGYLTRRLVDV+QD+++ E DC + + +T + Sbjct: 768 YFISAHGARKGLADTALKTADSGYLTRRLVDVSQDVIIRELDCNHPIEKTVRITKIT--- 824 Query: 830 DVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLE 873 D ++G+ A DV+ T +++ ++ + +L+ Sbjct: 825 -------DELIGKKLAADVINMTTEEVVAEAGEVITAELFSILK 861 Score = 222 bits (566), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 124/240 (51%), Positives = 160/240 (66%), Gaps = 5/240 (2%) Query: 1133 DITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPK 1192 DIT GLPR+ +LFEAR+PK AI+ E +G V+ E+K KR + IT D + +IP Sbjct: 1005 DITQGLPRIEELFEARKPKGLAIITEFAGEVAI-IESKKKREISITNADTGEMKSYLIPY 1063 Query: 1193 WRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKH 1252 ++ V +G+ +E GD +++G PHDIL+++G+ V Y++ EVQ VYRLQGV INDKH Sbjct: 1064 GSRIKVKDGDYIEAGDELTEGSINPHDILKIKGIRGVQDYMLKEVQRVYRLQGVDINDKH 1123 Query: 1253 IEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKA 1312 +EVIVRQM++K I G + L G V+ + N G A LLGITKA Sbjct: 1124 VEVIVRQMMKKVKIEENGDTTLLPGSLVDVLEYEKINEVTIEEGGTPADGKPTLLGITKA 1183 Query: 1313 SLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRR 1372 SLATESF+SAASFQETTRVLT+AA+ GK D L GLKENVI+G+LIPAGTG DR R+ Sbjct: 1184 SLATESFLSAASFQETTRVLTDAAIKGKVDPLIGLKENVIIGKLIPAGTG----MDRYRK 1239 Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 68/220 (30%), Positives = 126/220 (57%), Gaps = 5/220 (2%) Query: 819 GIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVD 878 G++++ EG ++ EPL +R+ GR AED+ P T ++++ + ++ + ++ + Sbjct: 880 GMVVSAFKEGTEMIEPLXERITGRFAAEDIYNPETGELIIEEDKMITPHLAEYIDSLGIT 939 Query: 879 AVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIG 938 AV++R+ +SC + GVC CYG +++ G+ + GE++G+IAAQSIGEPGTQLTMRTFH G Sbjct: 940 AVRIRTALSCKSTIGVCVKCYGANMSSGNQVRIGESVGIIAAQSIGEPGTQLTMRTFHTG 999 Query: 939 GAASRAAAESSIQVKNKGSI-KLSNVKSVVNSSGKLVI--TSRNTELKLIDEFGRTKESY 995 G A + +++ K + + +G++ I + + E+ + + +SY Sbjct: 1000 GIAGDDITQGLPRIEELFEARKPKGLAIITEFAGEVAIIESKKKREISITNADTGEMKSY 1059 Query: 996 KVPYGAVLAKGDGEQVAGGE--TVANWDPHTMPVITEVSG 1033 +PYG+ + DG+ + G+ T + +PH + I + G Sbjct: 1060 LIPYGSRIKVKDGDYIEAGDELTEGSINPHDILKIKGIRG 1099 >UniRef50_A8R9Q5 DNA-directed RNA polymerase n=3 Tax=Bacteria RepID=A8R9Q5_9FIRM Length = 1286 Score = 941 bits (2431), Expect = 0.0, Method: Compositional matrix adjust. Identities = 470/994 (47%), Positives = 651/994 (65%), Gaps = 85/994 (8%) Query: 17 FDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYK 76 F +I++ LASP+ I WS GEVKKPETINYR+ KPERDGLFC RIFGP KD+EC CGKYK Sbjct: 6 FASIQVGLASPERIHEWSHGEVKKPETINYRSQKPERDGLFCERIFGPSKDWECYCGKYK 65 Query: 77 RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIE 136 +++++GV+C++CGVE+T++ VRRERMGHIELA+P AHIW+L+ +PSR+ LLLD+ + +E Sbjct: 66 KVRYKGVVCDRCGVEITKSSVRRERMGHIELAAPVAHIWYLRGIPSRMALLLDVTPKQLE 125 Query: 137 RVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFG-DEFDAKMGAEAIQALLKSMDLE 195 V+YF S++V + T LE +Q+L+E +Y + + +G F AK GAEA LL+ +DLE Sbjct: 126 EVIYFVSWIVTDPKDTKLEYKQVLSEREYRENVAIYGPGSFTAKTGAEAALTLLEEVDLE 185 Query: 196 QECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPL 255 E +++ L E KRKKL KR+ +EAF S NKPEWMI+T +PV+PPDLRP++ L Sbjct: 186 AEFTKIQAALEGAQGE-KRKKLIKRLDTVEAFRHSDNKPEWMIMTAIPVIPPDLRPMLQL 244 Query: 256 DGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRA 315 DGGRFATSDLNDLYRRVI RNNRLK+LL+L P IIV+NEKRMLQEAVDAL+DNGRR + Sbjct: 245 DGGRFATSDLNDLYRRVITRNNRLKKLLELGTPAIIVQNEKRMLQEAVDALIDNGRRSKP 304 Query: 316 ITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALE 375 ITG+ R LKSL+ +KGKQGRFRQNLLGKRVD+SGRSVI VGP L+++QCGLP++MA++ Sbjct: 305 ITGAGGRALKSLSHSLKGKQGRFRQNLLGKRVDFSGRSVIAVGPDLKMYQCGLPREMAIQ 364 Query: 376 LFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQ 435 LFKPF+ ++ R +A+ K A+K+++R+++ +WDI++ VI +PVL+NRAPTLHRLGIQ Sbjct: 365 LFKPFVINEIVNREIASNPKTAEKLIDRQDSRIWDIVESVIDGYPVLMNRAPTLHRLGIQ 424 Query: 436 AFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPAN 495 AF+P L+EG+A++LHPLVC A+NADFDGDQMAVHVPL+ EA+ EA +M+ +NNIL P + Sbjct: 425 AFKPKLVEGRAMRLHPLVCTAFNADFDGDQMAVHVPLSEEARAEALVMMLGSNNILGPKD 484 Query: 496 GEPIIVPSQDVVLGLYYMTR-----------------DCVN--------AKGEGMVLTGP 530 G+PI+ P QD+V+G +Y+T DC EG V Sbjct: 485 GKPIVTPGQDMVMGNFYLTMEETAEEFHQEADRYMAVDCPKEAASWNRYGDNEGHVYGSI 544 Query: 531 KEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPY- 589 E Y + LH+RV + K + E L TTVG+ I + P+ P+ Sbjct: 545 NEVLMAYETNQIHLHSRVAIPARALHKTSFSEAQQNKYLL-TTVGKIIFNNMFPEDFPFL 603 Query: 590 -SIVNQ----------------------------ALGKKAISKMLNTCYRILGLKPTVIF 620 + N+ A KK + K++ ++ + T Sbjct: 604 NEVSNENFSATPDKYFLEMGKDVKEAIRNLPITPAFKKKDLGKIIGEIFKRYSTEKTSEI 663 Query: 621 ADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYN 680 D+I GF Y+ +G +V + D+ + K E + + + E++ G +T E Sbjct: 664 LDEIKDMGFRYSTVAGVTVSLADIEVAPHKDEHVEYGKEKAEELKRLRNKGKLTMQEWER 723 Query: 681 KVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQL 740 + +WA D +++ ++ +L + IN MMA SGARG+ + QL Sbjct: 724 HLNKLWADVKDDIAEELLGSLPRKNPIN---------------MMARSGARGNTSNFTQL 768 Query: 741 AGMRGLMAKPDG----------SIIETPITANFREGLNVLQYFISTHGARKGLADTALKT 790 AGMRGLMAKP SIIE PI + FREGLNV ++FISTHG RKGL DTALKT Sbjct: 769 AGMRGLMAKPSQSKSAKGEYVPSIIEVPIYSCFREGLNVSEFFISTHGVRKGLTDTALKT 828 Query: 791 ANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIE--GGDVKEPLRDRVLGRVTAEDV 848 A SGYLTRRLVDVAQD+++ +DDCGT +G + +++ + E L DR++GR + ++V Sbjct: 829 AESGYLTRRLVDVAQDVIIKQDDCGTDKGYWVEAIVDRKTNTIIESLYDRLVGRYSKQEV 888 Query: 849 LKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHI 908 + P T ++++ + + E +E++ ++ + +RS +C + +G+C CYGR++A G Sbjct: 889 VNPKTGELIIESDEFITEAIAKKIEDSGIEGMYIRSAFTCKSIYGICKKCYGRNMATGKD 948 Query: 909 INKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAAS 942 + GEA+G++AAQSIGEPGTQLTMRTFH GG AS Sbjct: 949 VEVGEAVGIMAAQSIGEPGTQLTMRTFHTGGVAS 982 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 109/234 (46%), Positives = 158/234 (67%), Gaps = 8/234 (3%) Query: 1133 DITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYE----E 1188 DIT GLPRV +LFEAR PK A+LA+ISG ++ ++ + + ++ S ++ + Sbjct: 987 DITQGLPRVEELFEARCPKGVAVLAQISGEITAIEQVETGYEVTVSNDKESIVHKVTLAQ 1046 Query: 1189 MIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKI 1248 I W ++ G VE GD I++GP P ++L++ GV V YI+ EV+ VY+ QG++I Sbjct: 1047 AIRPWMKI----GANVEAGDKITEGPVDPKELLKVAGVRQVQNYILKEVKKVYQSQGIEI 1102 Query: 1249 NDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLG 1308 +DKHIEV++RQMLRK ++ + G QV + + NR+ +GK AT+ LLG Sbjct: 1103 SDKHIEVMIRQMLRKVVVLEGNDTHLNAGVQVSLTEITKINRQALLSGKTPATFKPVLLG 1162 Query: 1309 ITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362 I+KAS+ T+SF+SAASFQETT+VLT+AA+ GK+D L GLKENVI+G++IPAGTG Sbjct: 1163 ISKASVETDSFLSAASFQETTKVLTDAAIKGKKDYLIGLKENVIIGKMIPAGTG 1216 >UniRef50_D1BP71 DNA-directed RNA polymerase n=10 Tax=Veillonellaceae RepID=D1BP71_VEIPT Length = 1400 Score = 935 bits (2417), Expect = 0.0, Method: Compositional matrix adjust. Identities = 490/962 (50%), Positives = 635/962 (66%), Gaps = 112/962 (11%) Query: 16 EFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKY 75 EFD+++I LASP+ I SWS GEVKKPETINYRT KPERDGLFC RIFGP KD+EC CGKY Sbjct: 6 EFDSMRIGLASPEQILSWSHGEVKKPETINYRTLKPERDGLFCERIFGPTKDWECHCGKY 65 Query: 76 KRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIG---------- 125 KR++H+GV+C+KCGVEVT+ KVRRERMGHI+LA+P +HIW+ K +PSR+G Sbjct: 66 KRIRHKGVVCDKCGVEVTRAKVRRERMGHIQLATPVSHIWYFKGIPSRMGLILDISPRSL 125 Query: 126 -----------------------LLLDMPLRDIERVLYFESY------VVIEGGMTNLER 156 LL + R+ E + Y VVIE ER Sbjct: 126 ERVLYFASYIVVDPAGTPLTKRQLLSEQEFREYEAQFNEDGYTIGGKSVVIETVAQRNER 185 Query: 157 QQILTE----EQYLDALE------EFGDEFDA--------------------KMGAEAIQ 186 I+ E E+Y AL E E++ MGAEA++ Sbjct: 186 LAIVREAQRKERYNAALRDDATIPEADKEYEELTREERYELGAAEEVLFACIDMGAEAVK 245 Query: 187 ALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLP 246 ALL +DLE +LREELN T S ++ + +R++++EAF QSGN+PEWMI+ ++PV+P Sbjct: 246 ALLSELDLEALNAELREELN-TASGQRKIRAVRRLEVVEAFRQSGNRPEWMIMDIVPVIP 304 Query: 247 PDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDAL 306 P+LRP+V LDGGRFATSDLNDLYRRVINRNNRLKRLLDL APDIIVRNEKRMLQEAVDAL Sbjct: 305 PELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEAVDAL 364 Query: 307 LDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQC 366 +DNGRRGR +TG RPLKSL+DM+KGKQGRFRQNLLGKRVDYSGRSVI VGP L++HQC Sbjct: 365 IDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKMHQC 424 Query: 367 GLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRA 426 GLPK+MALELFKPF+ +L RG A+ IKAAK+ VER VW+ L+EVI+EHPVLLNRA Sbjct: 425 GLPKEMALELFKPFVMKRLVERGQASNIKAAKRQVERIGPGVWESLEEVIKEHPVLLNRA 484 Query: 427 PTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMS 486 PTLHRLGIQAFEP+L EG+AI+LHPLVC A+NADFDGDQMA H+PL++EAQ EAR LM+S Sbjct: 485 PTLHRLGIQAFEPILWEGRAIKLHPLVCTAFNADFDGDQMACHLPLSVEAQAEARTLMLS 544 Query: 487 TNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHA 546 ++NILS +G+P+ VPSQD++LG YY+T N + + E Y S + L Sbjct: 545 SHNILSTKDGKPVAVPSQDMILGTYYLTVVRENTRDKAKTFATYDEVMLAYESHIIGLQD 604 Query: 547 RVKVRITEYEKDANGELVAKTSLKDTTVGRAI--------LWMIVPKGLPYSIVNQALGK 598 + +R+ ++ + +TT GR I LW + + + + K Sbjct: 605 ILYIRLPDHGR------------VETTAGRLIFNNALFPELWQYEKREDGTYSLGKVMDK 652 Query: 599 KAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAE 658 K + K+++ C+++ G + T D+I G+++A R+G +V I D+ +PE K ++ AE Sbjct: 653 KTVGKLVDQCFQLFGNEKTAELLDRIKSLGYSFARRAGMTVAIADIKVPEVKTSLLDTAE 712 Query: 659 AEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVS 718 EV ++ ++ GL+T ERY K I +W A + V+ AMMDN+ ++DG Sbjct: 713 QEVEKVSRMYRRGLITEEERYRKTIQLWTKATEDVTDAMMDNM----ACDKDG------- 761 Query: 719 FNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHG 778 FN +YMMA SGARG+ QIRQLAGMRGLMA P G II+ PI ANF+EGL VL YF S+HG Sbjct: 762 FNPVYMMAISGARGNKQQIRQLAGMRGLMADPSGRIIDLPIKANFKEGLTVLDYFTSSHG 821 Query: 779 ARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVK------ 832 ARKGLADTAL+TA+SGYLTRRLVDV+QD++V EDDC + + V E + Sbjct: 822 ARKGLADTALRTADSGYLTRRLVDVSQDVIVREDDCDV---VGIDLVRERARLATSPRQA 878 Query: 833 -EPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSV-VSCDT 890 E L+D+++GRV +DV+ T +++VP T+L EQ + E V ++ +R + D+ Sbjct: 879 LELLKDKLIGRVLDKDVVNAETGELVVPAETILDEQCLADIAEAGVTSIALRGAHLGSDS 938 Query: 891 DF 892 D Sbjct: 939 DI 940 Score = 229 bits (584), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 128/237 (54%), Positives = 163/237 (68%), Gaps = 3/237 (1%) Query: 1133 DITGGLPRVADLFEARRPKEPAILAEISGIVSF--GKETKGKRRLVITPVDGSDPYEEMI 1190 DIT GLPRV +LFEAR+PK AI+AE G V + KG + IT DG + + +I Sbjct: 1143 DITQGLPRVEELFEARKPKRNAIIAENEGTVRVVPNEGKKGTNTIFITGEDGIE-LDYLI 1201 Query: 1191 PKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKIND 1250 P ++ V +G+ V G +++G PHDI+R+ G A RY+V EVQ VY+ QGV+IND Sbjct: 1202 PYGSRIIVKDGDVVSLGARLTEGSINPHDIMRVMGTEATQRYLVYEVQKVYKSQGVEIND 1261 Query: 1251 KHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGIT 1310 KHIEVIVRQML K I AG +D L G+ V+ + NR L NG+ AT R LLGIT Sbjct: 1262 KHIEVIVRQMLHKVKIETAGDADMLPGDMVDVNTFDEENRRLTLNGRENATGKRTLLGIT 1321 Query: 1311 KASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQ 1367 KA+LAT+SF+SAASFQETTRVLT+AA+ GK D L GLKENVI+G+LIPAGTG + ++ Sbjct: 1322 KAALATDSFLSAASFQETTRVLTDAAIKGKIDPLLGLKENVIIGKLIPAGTGMSRYR 1378 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 83/225 (36%), Positives = 129/225 (57%), Gaps = 30/225 (13%) Query: 819 GIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVD 878 GI + ++EG V EPL+DR++GR+ AE+++ T +++VP N + E D + ++ + Sbjct: 1019 GIEVEAIVEGTGVIEPLKDRIVGRIAAEELVNKETGEVIVPLNGEITEALADEVVKH-YE 1077 Query: 879 AVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIG 938 VK+RSV++C + +GVC CYGRDL G+ + GEA+G+IAAQSIGEPGTQLTMRTFH G Sbjct: 1078 TVKIRSVLTCRSPYGVCRKCYGRDLGTGNQVQVGEAVGIIAAQSIGEPGTQLTMRTFHTG 1137 Query: 939 GAA----------------SRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTEL 982 G A +R ++I +N+G+++ VV + GK + T Sbjct: 1138 GVAGDDITQGLPRVEELFEARKPKRNAIIAENEGTVR------VVPNEGK-----KGTNT 1186 Query: 983 KLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGE--TVANWDPHTM 1025 I + Y +PYG+ + DG+ V+ G T + +PH + Sbjct: 1187 IFITGEDGIELDYLIPYGSRIIVKDGDVVSLGARLTEGSINPHDI 1231 >UniRef50_C8W807 DNA-directed RNA polymerase n=6 Tax=Actinobacteria (class) RepID=C8W807_ATOPD Length = 1475 Score = 932 bits (2410), Expect = 0.0, Method: Compositional matrix adjust. Identities = 533/1133 (47%), Positives = 696/1133 (61%), Gaps = 153/1133 (13%) Query: 10 AQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYE 69 A + EFDAIKI+LAS D IR WS+GEVKKPETINYRT KPE+DGLFC +IFGPV+D+E Sbjct: 2 ADFDSTEFDAIKISLASADDIRGWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPVRDWE 61 Query: 70 CLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGL--L 127 C CGKYK ++ +G+ CE+CGVEVT KVRR+RMGHIELA+P +HIW+ KS P+ L L Sbjct: 62 CACGKYKGIRFKGITCERCGVEVTTAKVRRDRMGHIELAAPVSHIWYFKS-PTSFPLARL 120 Query: 128 LDMPLRDIERVLYFESYVVI-------EGGMTNLERQQILTEEQYLDAL----------- 169 LD+ +D+E+VLYF SYV+ E + +L R+++ + + LDA Sbjct: 121 LDIKSKDLEKVLYFASYVITSVDTEAREADVDDL-REELAADLEELDAERDDQIARLREQ 179 Query: 170 -----EEFGD-----EFDAKMGAEAI------------QALLKSMDLEQE---------- 197 +EFGD E + + G + +A K M LE Sbjct: 180 GQPQDDEFGDFEPLSEDEIRAGVADLEEEYEEEKTLRREAFEKFMQLETRELISDEGLFS 239 Query: 198 ---------------CEQLREELNETNSETKRKKL-----------------TKRIKLLE 225 E +R+ L+ + E + K+L KR+++++ Sbjct: 240 ELKRYYGIYFKGGMGAEAVRDLLSNIDLEKEAKELRAIIANEDAQKQKREKAIKRLEIVD 299 Query: 226 AFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDL 285 AF++ GN P MIL V+PV+PPDLRP+V LDGGRFA SDLNDLYRRVINRNNRLKRLLDL Sbjct: 300 AFLKGGNDPANMILDVVPVIPPDLRPMVQLDGGRFAASDLNDLYRRVINRNNRLKRLLDL 359 Query: 286 AAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGK 345 AP IIV NEKRMLQE+VDAL DNGRRGR +TG RPLKSLA+ +KGKQGRFRQNLLGK Sbjct: 360 EAPSIIVNNEKRMLQESVDALFDNGRRGRPVTGRGGRPLKSLAEALKGKQGRFRQNLLGK 419 Query: 346 RVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKL-ELRGLATTIKAAKKMVERE 404 RVDYSGRSVI V P+L+LHQCGLP MALELFKPF+ +L ELR + IK AK+ ++R Sbjct: 420 RVDYSGRSVIVVDPHLKLHQCGLPSAMALELFKPFVMRRLVELRKVE-NIKGAKRAIDRG 478 Query: 405 EAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGD 464 VVWDILDEVI++ VLLNRAPTLHRL IQAFEPVLIEGKAI LHPLVCA +NADFDGD Sbjct: 479 TPVVWDILDEVIQDRLVLLNRAPTLHRLSIQAFEPVLIEGKAIHLHPLVCAPFNADFDGD 538 Query: 465 QMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEG 524 QM+VHVPL+ +AQ EAR LM+S+NN+ SPA+G+ + VPSQD+V G+YY+T + A + Sbjct: 539 QMSVHVPLSTQAQTEARILMLSSNNLRSPASGKVLTVPSQDMVFGVYYLTSEKTGADAKT 598 Query: 525 MVLTGPKEAERLYRSGL-ASLHARVKVRITEYEKDAN----GELVAK------------- 566 + ++A + L A+V VR++ KDAN G + + Sbjct: 599 LTFASFEDALLAIEANRDLDLQAKVVVRVS--TKDANVADSGRAIFRVMTGRGQYEDLNV 656 Query: 567 ---TSLKDTTVGRAIL-WMIVPKGLPYSIVNQALGKKAISKMLNTC---YRILGLKPTVI 619 T +TTVGR I +P+ PY +N + K I ++N C Y + ++P + Sbjct: 657 TEGTKRFETTVGRIIFNRQCLPEDYPY--INYKMVKSDIGILVNDCCDRYPMADVEPIL- 713 Query: 620 FADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERY 679 D I TGF YA +G +V + D VIPE K +++ EA+ V +I E ++ G ++ ER+ Sbjct: 714 --DNIKKTGFHYATLAGLTVSVWDAVIPEHKPQLLQEAQDRVDQINEYYEDGFLSERERH 771 Query: 680 NKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQ 739 +V++ W D + M+ + N IYMMADSGARGS Q+RQ Sbjct: 772 VEVVNAWTECTDLLGSEMLAGFAED---------------NPIYMMADSGARGSKTQLRQ 816 Query: 740 LAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRR 799 LAGMRGLMA G I+ PI ANFREGL L+YFIST+GARKGL DTA T++SGYLTRR Sbjct: 817 LAGMRGLMADMSGETIDLPIKANFREGLEPLEYFISTYGARKGLVDTASHTSDSGYLTRR 876 Query: 800 LVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVP 859 LVDVAQD++V E+DCGT E + P+I+ G + + ++GR T EDV P T ++L+P Sbjct: 877 LVDVAQDVIVREEDCGTDEAVTY-PLIKPG--QTSVDTDLIGRCTLEDVCDPNTGEVLIP 933 Query: 860 RNTLLH-EQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVI 918 + +Q + L E+ + V++R++++C + +GVC CYG DL+ +N G A+G+I Sbjct: 934 AGGYVESKQDLERLVEHGLTKVQLRALLTCKSKYGVCQKCYGWDLSTRRPVNIGTAVGII 993 Query: 919 AAQSIGEPGTQLTMRTFHIGGAASR--------AAAESSIQVKNKGSIKLSNVKSVVNSS 970 AAQSIGEPGTQLTMRT H GG A A V N L + S Sbjct: 994 AAQSIGEPGTQLTMRTIHSGGVAGADDITQGLPTVARMFDVVGNVNEKILGREADLAPVS 1053 Query: 971 GKLVITSRNTE--LKLI--DEFGRTKESYKVPYGAVLAKG--DGEQVAGGETV 1017 G L IT TE L+++ D+ R E ++VP G DG V G+ + Sbjct: 1054 GVLHITPETTEYLLRIVDADDASRVIEEWRVPASVRFMPGIEDGVVVRAGDQI 1106 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 90/253 (35%), Positives = 127/253 (50%), Gaps = 17/253 (6%) Query: 1129 GGTKDITGGLPRVADLFEA------RRPKEPAILAEISGIVSFGKETKGKRRLVITPVDG 1182 G DIT GLP VA +F+ + A LA +SG++ ET ++ VD Sbjct: 1016 AGADDITQGLPTVARMFDVVGNVNEKILGREADLAPVSGVLHITPETT---EYLLRIVDA 1072 Query: 1183 SDPYEEMIPKWR-------QLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVN 1235 D +I +WR + +G V GD I+ G + RL + + V Sbjct: 1073 DDA-SRVIEEWRVPASVRFMPGIEDGVVVRAGDQITRGFVNFRMLRRLTDIESTMHTFVE 1131 Query: 1236 EVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEAN 1295 V+DVY QGV++NDKHIEVI RQMLR+ + N G S +L G+ V+ + + Sbjct: 1132 SVKDVYTSQGVELNDKHIEVIARQMLRRVQVTNPGDSSYLLGQYVDRYVFAETVQNIALA 1191 Query: 1296 GKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGR 1355 G +LG K + + +S++S+ASF T VLT AA+ G D L LK NVIVG+ Sbjct: 1192 GGTPPEAEPAILGTLKVASSIDSWLSSASFIRTAGVLTSAAIEGDVDHLLDLKSNVIVGK 1251 Query: 1356 LIPAGTGYAYHQD 1368 IPAGTG + + D Sbjct: 1252 QIPAGTGLSAYND 1264 >UniRef50_Q8KTP7 DNA-directed RNA polymerase n=1 Tax=Candidatus Tremblaya princeps RepID=Q8KTP7_TREPR Length = 1319 Score = 926 bits (2394), Expect = 0.0, Method: Compositional matrix adjust. Identities = 557/1362 (40%), Positives = 768/1362 (56%), Gaps = 134/1362 (9%) Query: 17 FDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYK 76 FD +K+ +ASP IRSWS GEV T+N R+ PE GLFC IFGP +EC CG+Y Sbjct: 20 FDRVKVCMASPLQIRSWSHGEVLTAATVNQRSMIPEAHGLFCTEIFGPAMCHECKCGRYA 79 Query: 77 RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIE 136 +H G+ICE CGVE+ + RR RMGHIELASP H WF + +G +L +P ++ Sbjct: 80 GEQHSGIICECCGVEIAPSYARRLRMGHIELASPVMHAWFSRPSSPHVGTILGLPHSEVV 139 Query: 137 RVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQ 196 RV ++ ++ G T L R +T + A A G + ++ LL S+ +E+ Sbjct: 140 RVARLQARLIRPPGAT-LCRDLTMTSMEDSIARTVGMQHGLAYSGCDGLRRLLASISMER 198 Query: 197 ECEQLREELNETN-SETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPL 255 E + ++++R + R+++L + ++ +PEWMILTV+PVLP LRP++ Sbjct: 199 EVHDTTARIASPRVTDSQRGSMICRLRMLSSLLEFDARPEWMILTVIPVLPAGLRPMIRS 258 Query: 256 DGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLD-NGRRGR 314 G A+SDLNDLYR VIN NNRL+RL+ L AP IV E +LQ +VD L+D R+G Sbjct: 259 AGRDAASSDLNDLYRGVINCNNRLRRLIALRAPQSIVAAEHDLLQRSVDDLMDGTARQGN 318 Query: 315 AITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMAL 374 A + RP +SL++ ++GK GRFRQ++LGKRVDYSGRSVI VGP L +HQCG+P MAL Sbjct: 319 A--REHCRP-RSLSEALRGKTGRFRQHMLGKRVDYSGRSVIVVGPDLGMHQCGIPICMAL 375 Query: 375 ELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGI 434 ELF+PF+ G L G+A +A+ AV L IR HPVLLNRAPTLHRL + Sbjct: 376 ELFRPFVAGALIRGGMAAQRASAEVSAGSTAAVA--ALRHAIRHHPVLLNRAPTLHRLSV 433 Query: 435 QAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPA 494 QAF P L+EG AI+L+PLVCA +NADFDGDQMAVHVPL++EA EAR L++ NN+L PA Sbjct: 434 QAFYPTLVEGLAIRLNPLVCAPFNADFDGDQMAVHVPLSVEAATEARMLLLPCNNLLLPA 493 Query: 495 NGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITE 554 +G P P+QD+VLG+YY+T C L A SG + H+R + E Sbjct: 494 SGYPASAPTQDMVLGIYYLT--CGPEDDYHGELGRADRAALKMESGWSRSHSRAMGVVRE 551 Query: 555 YEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLN-TCYRILG 613 + G + L +TTVGRA+L +P G P+ VN+ + K + +++N R L Sbjct: 552 SLRH-RGSYSEFSVLHNTTVGRALLSHALPAGTPFHRVNRTISKGVLVEVMNEAAQRCL- 609 Query: 614 LKPTVI--FADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSG 671 P + A+ +M GF A R+G S+ IDDM P +K I+ A + + SG Sbjct: 610 --PLCLKGMAESLMVAGFNAATRAGISLCIDDMCAPVRKVVTIAGAWRISSLLHRSHNSG 667 Query: 672 LVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGAR 731 ++T + +W ++ VS D L E + R G + N++++M+ SG+R Sbjct: 668 VLTGTRLDHATTRLWQETSELVS----DMLALE--LARQGSTTLAAT-NAVHLMSASGSR 720 Query: 732 GSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTA 791 GS Q++QL+GMRGLM +PDG+I+ TP+T++FREGLN ++Y +S HGARKGLADTAL+TA Sbjct: 721 GSTEQVKQLSGMRGLMVRPDGTILGTPVTSSFREGLNAVEYAMSAHGARKGLADTALRTA 780 Query: 792 NSGYLTRRLVDVAQDLVVTEDDCGTHEGIMM-TPVIEGGDVKEPLRDRVLGRVTAEDVLK 850 +SGYLTRRLVD + D+++TE DCGT G+ + P + V L +GR TA V + Sbjct: 781 DSGYLTRRLVDASHDVIITELDCGTCAGVTVGRPKLNSTAVDRAL-AWCIGRYTASSV-Q 838 Query: 851 PGTADILVPRNTLLHEQWCDLLEEN---SVDAVKVRSVVSCDTDFGVCAHCYGRDLARGH 907 D+L PRNT + D+LE++ SV + +RS + CD+ GVCA CYG+DL Sbjct: 839 SDAGDVLYPRNTSITR---DVLEDSLLRSVAGLNIRSPLHCDSQNGVCAMCYGQDLCTLS 895 Query: 908 IINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVV 967 +N G A+GV+AAQSIGEPGTQLTMRTFHIGG AS + + + G ++ S V Sbjct: 896 RVNMGAAVGVVAAQSIGEPGTQLTMRTFHIGGIASSRSHD--VMACQPGVVRYSPCTHSV 953 Query: 968 NSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPV 1027 V +S N +++ D G +ES+ +P+G++L G+ VA GE + +WD T PV Sbjct: 954 TPHRVRVASSHNGSVQIHDGRGCARESHAIPHGSILHHASGDIVAAGEVLLSWDAVTTPV 1013 Query: 1028 ITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGND 1087 I + T +G + R G V+L + G + Sbjct: 1014 IAQHDSLA--TKCAEGIRLKRS----DGRCCTVMLSA--------------------GAE 1047 Query: 1088 VLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEA 1147 V I T QY + G +A P + G DITGGL R+A LFEA Sbjct: 1048 VAIGAT----QY---------------VRRGQVIATEPAHAEGNTDITGGLARIASLFEA 1088 Query: 1148 RRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERG 1207 R + R+ N + G Sbjct: 1089 RHAQ------------------------------------------RRHNEHDNSCWLHG 1106 Query: 1208 DVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIV 1267 + S+GP A+ + + ++VQ + QGV++N+KH+E+I RQMLR +V Sbjct: 1107 LLRSNGPT------------ALLQRLQDDVQSILEPQGVRVNNKHLEIIARQMLRCVRVV 1154 Query: 1268 NAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQE 1327 N G S F EGE V S AN L + A Y LLGITK++L+TESFISAASFQ+ Sbjct: 1155 NPGDSAFHEGEHVARSEAARANAGLRLQNRRTAAYEHTLLGITKSALSTESFISAASFQD 1214 Query: 1328 TTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDR 1369 TT+V+ AA G+RD LRGLKENVIVGR+IPAGTG+ YH R Sbjct: 1215 TTKVIATAAACGRRDFLRGLKENVIVGRMIPAGTGFVYHAHR 1256 >UniRef50_D1C2J9 DNA-directed RNA polymerase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C2J9_SPHTD Length = 1479 Score = 916 bits (2368), Expect = 0.0, Method: Compositional matrix adjust. Identities = 481/916 (52%), Positives = 633/916 (69%), Gaps = 56/916 (6%) Query: 151 MTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNS 210 +++L+ Q+LTE QY +A+E F A MGAEA+ ++ MDL++ +LR+E++ + Sbjct: 332 ISDLKPLQVLTETQYREAMELAPGVFKAGMGAEAVYEVVSKMDLDKLSAELRQEIHSVSG 391 Query: 211 ETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYR 270 + +RKK KR++++EA +SGN+PEWMI TVLPV+PPDLRP+V LDGGRFATSDLNDLYR Sbjct: 392 Q-RRKKAAKRLRVVEALRKSGNRPEWMIFTVLPVIPPDLRPMVQLDGGRFATSDLNDLYR 450 Query: 271 RVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADM 330 RVINRNNRLKRLL+L APDIIVRNEKRMLQEAVDAL+DNGRRGR ++GS K LKSL+DM Sbjct: 451 RVINRNNRLKRLLELGAPDIIVRNEKRMLQEAVDALIDNGRRGRVVSGSGKHKLKSLSDM 510 Query: 331 IKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGL 390 +KGKQGRFRQNLLGKRVDYSGRSVI VGP L+LHQCGLPK+MALELFKPF+ KL +G Sbjct: 511 LKGKQGRFRQNLLGKRVDYSGRSVIVVGPDLKLHQCGLPKRMALELFKPFVMQKLVAQGY 570 Query: 391 ATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLH 450 A IKAAK++VER + VWD+L++VI ++ VLLNRAPTLHRLGIQAFE LIEG AIQLH Sbjct: 571 AHNIKAAKRLVERVDPHVWDVLEQVIADYLVLLNRAPTLHRLGIQAFEVKLIEGSAIQLH 630 Query: 451 PLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGL 510 PLVCAA+NADFDGDQMAVHVPL+ AQ EAR M+ST N+L P++G+P+I P+QD+VLG Sbjct: 631 PLVCAAFNADFDGDQMAVHVPLSAAAQQEARERMLSTRNLLDPSDGDPVITPTQDIVLGC 690 Query: 511 YYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLK 570 YYMT A+GEG V GP E E YR+G+ L A++KVR+ + NG + L Sbjct: 691 YYMTLPRPGARGEGKVFAGPHEVELAYRTGVVDLQAQIKVRL-----ELNG---SGPQLV 742 Query: 571 DTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFA 630 DTTVGR +L ++P L + N+ + +KA+ +++ CYR LG + T AD I GF Sbjct: 743 DTTVGRVLLNEVIPDELGFW--NETMDRKALRRLVAACYRELGPEVTAEMADNIKTIGFN 800 Query: 631 YAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAAN 690 YA + G ++G+ D+ IPE K II+ A+A+V E++ Q++ GL+T ER+ +V++IW A Sbjct: 801 YATKGGLTIGLTDVHIPESKEAIIAAADAKVEEVERQYRRGLITDAERHREVVNIWNDAR 860 Query: 691 DRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKP 750 D ++KA+ L N++YMM+ SGA+G+ QI Q+AGMRGLM P Sbjct: 861 DELAKAVEAGLGVN---------------NALYMMSTSGAKGNINQISQMAGMRGLMLDP 905 Query: 751 DGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVT 810 G II+ PI +NFREGL+VL+YFISTHGARKGLADTAL+TA+SGYLTRRLVDVAQD++VT Sbjct: 906 GGKIIDLPIRSNFREGLSVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVAQDVIVT 965 Query: 811 EDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCD 870 DDCGT EG+ + ++ E R++GR+ A+ V+ P T +ILV RN + E Sbjct: 966 VDDCGTEEGMRIE--VDSMPDTESFIGRIVGRMAAQPVVDPNTGEILVERNGEITEAIAR 1023 Query: 871 LLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQL 930 L V V VR+ + C+ + GVC +CYGR+LA G +++ GEA+G+IAAQSIGEPGTQL Sbjct: 1024 DLVARGVPRVDVRTPMQCEAEHGVCRYCYGRNLASGQLVDLGEAVGIIAAQSIGEPGTQL 1083 Query: 931 TMRTFHIGGAASRAAAESSIQVKN-------KGSIKLSNVKSVV----NSSGKLVITSRN 979 TMRTFH GG A +V+ KG L+ VV + SG+ ++ SR Sbjct: 1084 TMRTFHTGGVAGEDITTGLPRVEELFEAREPKGKAILAEHDGVVHIVEDESGRRILLSRE 1143 Query: 980 TELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTM---PVITEVSGFVR 1036 +++ + E Y+V DGE VA G+ +A+ P + PV+ + G V Sbjct: 1144 ---EIVTDVMALPEGYQVLV------ADGETVAVGQVLAS-PPEGVEGDPVVASMDGVV- 1192 Query: 1037 FTDMIDGQTITRQTDE 1052 +DGQ + +E Sbjct: 1193 ---FLDGQEFVLRHEE 1205 Score = 229 bits (584), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 99/150 (66%), Positives = 123/150 (82%), Gaps = 3/150 (2%) Query: 16 EFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKY 75 +FDAI+I+LASP+ IRSWS GEV KPETINYRT +PE GLFC RIFGP +D+EC CGKY Sbjct: 21 DFDAIRISLASPEAIRSWSHGEVTKPETINYRTLRPEHGGLFCERIFGPTRDFECYCGKY 80 Query: 76 KRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDI 135 KR++H G IC+KCGVEVT++KVRRERMGHIELA+P AHIW++K PSR+GLLLD+ R++ Sbjct: 81 KRVRHAGTICDKCGVEVTRSKVRRERMGHIELAAPVAHIWYVKGTPSRLGLLLDISPRNL 140 Query: 136 ERVLYFESYVVIEGGMTNLERQQILTEEQY 165 ERVLYF SY+V E + E+++ L E Y Sbjct: 141 ERVLYFASYLVTE---VDEEKREALIREIY 167 Score = 206 bits (523), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 140/330 (42%), Positives = 177/330 (53%), Gaps = 73/330 (22%) Query: 1128 SGGT--KDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRL---------- 1175 +GG +DIT GLPRV +LFEAR PK AILAE G+V ++ G+R L Sbjct: 1090 TGGVAGEDITTGLPRVEELFEAREPKGKAILAEHDGVVHIVEDESGRRILLSREEIVTDV 1149 Query: 1176 ----------------------------------VITPVDG---------------SDPY 1186 V+ +DG + Sbjct: 1150 MALPEGYQVLVADGETVAVGQVLASPPEGVEGDPVVASMDGVVFLDGQEFVLRHEETQTT 1209 Query: 1187 EEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGV 1246 E +P + V +G+ V G ++DG P IL+ G AV RY+V+EVQ VY+ QGV Sbjct: 1210 EYQVPASAHIRVNDGDTVTTGTQLTDGNLDPQQILQTMGRAAVQRYLVDEVQKVYKSQGV 1269 Query: 1247 KINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDL 1306 NDKHIEVIVRQMLRK + + G +D L GE ++ N E+ A G AT + L Sbjct: 1270 VTNDKHIEVIVRQMLRKVAVEDPGDTDLLVGELIDRFTFNRINEEIIAEGGEPATAQQVL 1329 Query: 1307 LGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYH 1366 LGITKASLATESF+SAASFQETTRVLTEAA+ GK D LRGLKENVI+G+LIPAG+G+ Sbjct: 1330 LGITKASLATESFLSAASFQETTRVLTEAAIHGKVDYLRGLKENVIIGKLIPAGSGFWAR 1389 Query: 1367 QDRMRRRAAGEAPAAPQVTAEDASASLAEL 1396 +R+A G +TA D ASLA + Sbjct: 1390 ----KRKAEG-------LTAHD-EASLAAM 1407 >UniRef50_A9NEL8 DNA-directed RNA polymerase subunit beta' n=9 Tax=Bacteria RepID=RPOC_ACHLI Length = 1375 Score = 914 bits (2362), Expect = 0.0, Method: Compositional matrix adjust. Identities = 468/981 (47%), Positives = 643/981 (65%), Gaps = 70/981 (7%) Query: 14 TEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCG 73 ++ F K+ LASPD IR+WS+GEV ETINYRT KPE GLF RIFGP +DY+C CG Sbjct: 163 SKAFTHFKVRLASPDEIRNWSYGEVINHETINYRTSKPEPGGLFDERIFGPTRDYQCACG 222 Query: 74 KYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLR 133 K K+ ++G IC KCG+E+T++KVRRERMGHI L +P H W+LK+ PSR+ +LL + + Sbjct: 223 K-KQTVNKGQICPKCGIEITESKVRRERMGHINLEAPVVHTWYLKNSPSRLAILLGIKAK 281 Query: 134 DIERVLYFESYVVIEGGM-TNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSM 192 +E V+Y SY+V + G T L ++QIL+E+ Y +EE+G F A GAEA++ LL+ + Sbjct: 282 QLEEVVYHASYIVTDPGQNTPLAKKQILSEQDYSLLVEEYGSRFTALTGAEAVKKLLQDL 341 Query: 193 DLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPL 252 DL++E + LR+ L +T+S+ KR ++ KR+ ++EAF QS NKPEWM++ V+PV+PPDLRP+ Sbjct: 342 DLDKEVKNLRKRL-KTSSKQKRDRIIKRLDVVEAFNQSDNKPEWMVMDVIPVIPPDLRPM 400 Query: 253 VPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRR 312 VPLDGGRFAT+DLNDLYRR++NRNNRLK+ + AP +I +NEKRMLQEAVDAL DN +R Sbjct: 401 VPLDGGRFATTDLNDLYRRILNRNNRLKKQKEQMAPRLITKNEKRMLQEAVDALFDNAKR 460 Query: 313 GRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKM 372 G+ R LKSL+D+++GKQGRFRQNLLGKRVDYSGRSVI VGP L ++QCG+P++M Sbjct: 461 GKKAAVERNRHLKSLSDLLRGKQGRFRQNLLGKRVDYSGRSVIIVGPDLEMYQCGIPREM 520 Query: 373 ALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRL 432 A+ LFKPFI +L+L A K A ER + W L++V+REHPVLLNRAPTLHRL Sbjct: 521 AITLFKPFILRELQLTHGAEK-KNANAKYERRDDDTWRALEKVVREHPVLLNRAPTLHRL 579 Query: 433 GIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILS 492 GIQAFE LI+GKAI+LHPLV A+NADFDGDQMAVH+PL+ EAQ EAR LM+++NNIL+ Sbjct: 580 GIQAFEVKLIDGKAIRLHPLVTPAFNADFDGDQMAVHLPLSPEAQAEARLLMLASNNILN 639 Query: 493 PANGEPIIVPSQDVVLGLYYMT-----------------RDCVNAKGEGMVLTGPKEAER 535 P +G+P++ PSQD+VLG YY+T + + EG + E + Sbjct: 640 PRDGKPVVTPSQDMVLGNYYLTIEESKDRNFGDDLERTKKHQEKHRHEGKFFSSIDEVKI 699 Query: 536 LYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPY----SI 591 Y + SLH R+ ++ E KD + K TT+G+ I I+P+ PY ++ Sbjct: 700 AYENKDISLHTRIIIK-PESVKDT-FTVEQKNMYLVTTLGKIIFNEILPETFPYVNEPTM 757 Query: 592 VN---------------------------QALGKKAISKMLNTCYRILGLKPTVIFADQI 624 N + K+ +S ++ +++ + T D++ Sbjct: 758 SNLSEKTPDIYFIKKGVNPKDALKHIPTPEPFKKRFLSMVIAQVFKLFHISETSRMLDKL 817 Query: 625 MYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVID 684 GF Y+ +G ++ D+ + KK E++ E E+ EI+E F+ GL+T ER VID Sbjct: 818 KDLGFKYSTVAGITISYADINVYSKKKEMVEATEEEINEIEEWFEDGLLTDSERRKLVID 877 Query: 685 IWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMR 744 W + + +M + N+I+MM+DSGARG+ + QL GMR Sbjct: 878 KWTNVKNEIQSGIMKEFDKD---------------NNIFMMSDSGARGNVSNFTQLVGMR 922 Query: 745 GLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVA 804 GLM+ P G IE P+ ++FREGL V ++FISTHGARKG DTALKTA SGYLTRRLVDV+ Sbjct: 923 GLMSNPKGETIEVPVQSSFREGLTVSEFFISTHGARKGSTDTALKTAESGYLTRRLVDVS 982 Query: 805 QDLVVTEDDCGTHEGIMMTPVI-EGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTL 863 QD+++ EDDCG+ G+ + + E G PL DR+ GR A D++ P T ++ V RN L Sbjct: 983 QDVIIVEDDCGSSHGVYVEAIKDESGKEIVPLYDRIYGRFAAHDIISPKTGEVFVKRNEL 1042 Query: 864 LHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSI 923 + E+ + ++ + V++RS+++C + G+CA YG +LA + GEAIGV+AAQSI Sbjct: 1043 ITEEIGLAIVKSGMQKVEIRSIMTCTSSHGICAKDYGINLATNQFVEVGEAIGVVAAQSI 1102 Query: 924 GEPGTQLTMRTFHIGGAASRA 944 GEPGTQLTMRTFH GG A+ A Sbjct: 1103 GEPGTQLTMRTFHTGGVAAGA 1123 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 111/241 (46%), Positives = 151/241 (62%), Gaps = 5/241 (2%) Query: 1133 DITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPK 1192 DIT GLPR+ +LFEAR PK A ++E+ G V G + IT G++ + P Sbjct: 1124 DITQGLPRIQELFEARNPKGKATISEVEGKVKDISRRGGSISITITDTQGTEYKYTLDPN 1183 Query: 1193 WRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKH 1252 L V +G+ V G +S G P ++LR+ V + YI+ EVQ VYR QGV+I+DKH Sbjct: 1184 IEAL-VKKGQDVVAGQKLSSGSINPKELLRVTDVKTASNYILEEVQKVYRAQGVEISDKH 1242 Query: 1253 IEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKA 1312 +EVI+RQMLR+ ++ G ++ L G +V K N+E+ N A LLGIT+A Sbjct: 1243 VEVIIRQMLRRIMVIIEGDTNILPGTEVSIDEFKRENKEVLKNRGRLAVGRPILLGITRA 1302 Query: 1313 SLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA----YHQD 1368 SL ++SF+SAASFQETTR+LT+AA+ K+DEL GLKENVI+G LIPAGTG +H D Sbjct: 1303 SLRSDSFLSAASFQETTRILTDAAIRSKKDELHGLKENVIIGGLIPAGTGILQEKFFHYD 1362 Query: 1369 R 1369 + Sbjct: 1363 Q 1363 >UniRef50_B9KZZ3 DNA-directed RNA polymerase n=2 Tax=Bacteria RepID=B9KZZ3_THERP Length = 1459 Score = 909 bits (2350), Expect = 0.0, Method: Compositional matrix adjust. Identities = 487/940 (51%), Positives = 640/940 (68%), Gaps = 61/940 (6%) Query: 158 QILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKL 217 Q+LTE+QY D + F+AKMGAEA+ ++ SMDL+Q QLR E+ + + ++K++ Sbjct: 336 QVLTEQQYRDLADLAPGVFEAKMGAEAVYEVVSSMDLDQLSAQLRAEMAQATGQ-RQKRI 394 Query: 218 TKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNN 277 KR++L+EA +SGN+PEWM+LTVLPV+PPDLRP+V LDGGRFATSDLNDLYRRVINRNN Sbjct: 395 AKRLRLVEALRKSGNRPEWMLLTVLPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNN 454 Query: 278 RLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGR 337 RLKRLL+L APDII+RNEKRMLQEAVDAL+DNGRRGR ++G++K LKSL+DM+KGKQGR Sbjct: 455 RLKRLLELGAPDIIIRNEKRMLQEAVDALIDNGRRGRVVSGTSKHKLKSLSDMLKGKQGR 514 Query: 338 FRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAA 397 FRQNLLGKRVDYSGRSVI VGP L+LHQCGLPK+MALELFKPF+ +L + G A IKAA Sbjct: 515 FRQNLLGKRVDYSGRSVIVVGPDLKLHQCGLPKRMALELFKPFVMQRLVVHGHAHNIKAA 574 Query: 398 KKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAY 457 K++VER + VWD+L+EV + + VLLNRAPTLHRLGIQAFE LIEG AIQLHPLVCAA+ Sbjct: 575 KRLVERMDPRVWDVLEEVTQNYLVLLNRAPTLHRLGIQAFEVKLIEGSAIQLHPLVCAAF 634 Query: 458 NADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDC 517 NADFDGDQMAVHVPL+ AQ EAR M+ST N+L P++GEP+I P+ D+VLG Y MT Sbjct: 635 NADFDGDQMAVHVPLSAAAQREARERMLSTRNLLDPSDGEPVIAPTLDIVLGCYAMTLPD 694 Query: 518 VNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRA 577 NA+G G + +E Y+SG L A ++VR+ E D GE L +TTVGR Sbjct: 695 PNARGAGKIFADRQEVVLAYQSGAVDLQAPIRVRM---EIDGQGE-----QLVETTVGRV 746 Query: 578 ILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGA 637 + I+PK L + N+ + +KA+ +++ TCY LG + T AD+I GF YA +SG Sbjct: 747 LFNEILPKELGFW--NELMDRKALRRLIATCYTRLGAEETARLADRIKDLGFHYATKSGI 804 Query: 638 SVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAM 697 ++G+ D+ IP +K EII+ AE VAE++ Q++ GL+T ER+ +V+ IW A D +++ Sbjct: 805 TIGVTDVHIPAEKAEIIARAEQRVAEVERQYRRGLITDAERHREVVSIWNEARDELAQ-- 862 Query: 698 MDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIET 757 V+ R E+ NS+YMM+ SGA+G+ QI Q+AGMRGLM P G IIE Sbjct: 863 --------VVERSLGEQ-----NSLYMMSKSGAKGNINQISQMAGMRGLMLDPKGQIIEL 909 Query: 758 PITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTH 817 PI +NFREGL+VL+YFISTHGARKGLADTAL+TA+SGYLTRRLVDVAQD++VT DDCGT Sbjct: 910 PIRSNFREGLSVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVAQDVIVTIDDCGTE 969 Query: 818 EGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQW-CDLLEE-- 874 +G+ + +E +E DR+LGRV A D++ P T +LV RN + E D++ Sbjct: 970 DGMWVR--LEDVPDRETFADRILGRVAARDLIDPATGTVLVRRNEEITESIVADIVASLD 1027 Query: 875 -----NSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQ 929 + + AV +R+ + C D+GVC CYGR+LA I+ GEA+G+IAAQSIGEPGTQ Sbjct: 1028 RSEPAHRITAVMIRTPLYCTADYGVCRLCYGRNLATRQIVELGEAVGIIAAQSIGEPGTQ 1087 Query: 930 LTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLI-DEF 988 LTMRTFH GG A G ++ + GK V+ + ++++ DEF Sbjct: 1088 LTMRTFHTGGVAGEDI--------TTGLPRVEELFEAREPKGKAVLAKIDGVVQVVEDEF 1139 Query: 989 GRT---------KESYKVPYGAVLAKGDGEQVAGGETVAN-WDPHTMPVITEVSGFVRFT 1038 GR E+++VP G VL G G+ V G+ +A + P++ + G V F Sbjct: 1140 GRKVIVEDARLETETHRVPEGFVLLVGTGDMVTAGQVLARPAEGEGEPIVATMDGEV-FV 1198 Query: 1039 D----MIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDL 1074 D +I + R+ LT + L+V + ER G+ L Sbjct: 1199 DGDELIIRREEQRREEYPLTATAHLLV-SNGERVKAGQQL 1237 Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 102/167 (61%), Positives = 129/167 (77%), Gaps = 4/167 (2%) Query: 17 FDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYK 76 F+AI+I LASP+ IRSWS+GEV KPETINYRT KPE GLFC RIFGP KD+EC CGKYK Sbjct: 19 FEAIRIGLASPEAIRSWSYGEVTKPETINYRTLKPEHGGLFCERIFGPTKDFECYCGKYK 78 Query: 77 RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIE 136 R ++ G IC+KCGVEVT++KVRRERMGHIELA+P AHIW++K PSR+GLLLD+ R++E Sbjct: 79 RQRYAGTICDKCGVEVTRSKVRRERMGHIELAAPVAHIWYVKGTPSRLGLLLDITPRNLE 138 Query: 137 RVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAE 183 RVLYF SY+V + +RQ+++ E L+ DE D ++ A+ Sbjct: 139 RVLYFASYLVTR--VDEAKRQELI--ENIRQELQAELDELDRQLEAK 181 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 111/210 (52%), Positives = 145/210 (69%), Gaps = 11/210 (5%) Query: 1195 QLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIE 1254 L V GERV+ G ++DG +P ++L G AV RYI++EVQ VY+ QGV ND+HIE Sbjct: 1222 HLLVSNGERVKAGQQLTDGNVSPEELLNTLGRDAVQRYILDEVQKVYKSQGVITNDRHIE 1281 Query: 1255 VIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASL 1314 +I+RQMLRK + + G +D L GE ++ +++ N E+ A G V AT + LLGITKASL Sbjct: 1282 IIIRQMLRKVAVTDPGDTDLLVGEMLDRAQLLRINEEVIAQGGVPATAQQVLLGITKASL 1341 Query: 1315 ATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRA 1374 ATES++SAASFQETTRVLTEAA+ GK D LRGLKENVI+G+LIPAG+G+ +R +RR Sbjct: 1342 ATESWLSAASFQETTRVLTEAAIQGKVDYLRGLKENVIIGKLIPAGSGF---WERKQRRE 1398 Query: 1375 AGEAPAAPQVTAEDASASLAELLNAGLGGS 1404 A ++A D A+LA L GLG S Sbjct: 1399 AA-------LSALD-EATLAGLAAVGLGPS 1420 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 74/163 (45%), Gaps = 23/163 (14%) Query: 1031 VSGFVRFTDMID---GQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGND 1087 + G V D+ID G + R+ +E+T ++ S +R+ PA +I Sbjct: 989 ILGRVAARDLIDPATGTVLVRRNEEITESIVADIVASLDRS------EPAHRITAVMIRT 1042 Query: 1088 VLIPGTDMPAQYFLPGK-----AIVQLEDGVQI-------SSGDTLARIPQESGGT--KD 1133 L D G+ IV+L + V I G L +GG +D Sbjct: 1043 PLYCTADYGVCRLCYGRNLATRQIVELGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGED 1102 Query: 1134 ITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLV 1176 IT GLPRV +LFEAR PK A+LA+I G+V ++ G++ +V Sbjct: 1103 ITTGLPRVEELFEAREPKGKAVLAKIDGVVQVVEDEFGRKVIV 1145 >UniRef50_Q2W2I2 DNA-directed RNA polymerase subunit beta' n=10 Tax=Bacteria RepID=RPOC_MAGSA Length = 1496 Score = 885 bits (2288), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/515 (79%), Positives = 470/515 (91%), Gaps = 1/515 (0%) Query: 1 MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60 M +L+K + T+ FD I+I++ASP+ IRSWS+GE+KKPETINYRTFKPERDGLFCAR Sbjct: 1 MNELMKIFGQVSGTQSFDQIRISIASPERIRSWSYGEIKKPETINYRTFKPERDGLFCAR 60 Query: 61 IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120 IFGP+KDYECLCGKYKR+K+RG+ICEKCGVEVT KVRRERMGHIELASP AHIWFLKSL Sbjct: 61 IFGPIKDYECLCGKYKRMKYRGIICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL 120 Query: 121 PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFG-DEFDAK 179 PSRIGLL DM L+D+ER+LYFE+YVV+E G+T L+ +++LTEEQY+ A++E+G D F AK Sbjct: 121 PSRIGLLCDMTLKDLERILYFENYVVVEPGLTPLKIRELLTEEQYMRAVDEYGEDAFTAK 180 Query: 180 MGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMIL 239 +GAEAI+ +L +DLE E QL+ +L ET SE KRKKL KR+KL+EAF++SG++PEWMIL Sbjct: 181 IGAEAIRDMLTVIDLETEKAQLKVDLKETTSEAKRKKLVKRMKLVEAFMESGSRPEWMIL 240 Query: 240 TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRML 299 V+PV+PP+LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL++L AP+IIVRNEKRML Sbjct: 241 EVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPEIIVRNEKRML 300 Query: 300 QEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP 359 QEAVDAL DNGRRGRAITG+NKRPLKSL+DM+KGKQGRFRQNLLGKRVDYSGRSVI VGP Sbjct: 301 QEAVDALFDNGRRGRAITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP 360 Query: 360 YLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREH 419 L+LHQCGLPKKMALELFKPF+Y KLEL G+ATTIKAAK+MVE+E VWDIL+EVIREH Sbjct: 361 ELKLHQCGLPKKMALELFKPFVYSKLELYGMATTIKAAKRMVEKERPEVWDILEEVIREH 420 Query: 420 PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLE 479 PV+LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVC A+NADFDGDQMAVHVPL+LEAQLE Sbjct: 421 PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE 480 Query: 480 ARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT 514 AR LMMSTNNILSPANG+PIIVPSQD+VLG+YY+T Sbjct: 481 ARVLMMSTNNILSPANGKPIIVPSQDIVLGIYYIT 515 Score = 841 bits (2173), Expect = 0.0, Method: Compositional matrix adjust. Identities = 435/853 (50%), Positives = 593/853 (69%), Gaps = 27/853 (3%) Query: 543 SLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKG--LPYSIVNQALGKKA 600 +LH +++ R D+ G V T + DTT GR +L +I+PK +P+S++N+ L KK Sbjct: 648 TLHTKIRARFDTV--DSEGTPV--TQIVDTTPGRMMLSVILPKNKNVPFSLINRLLTKKE 703 Query: 601 ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAE 660 I +++ YR G K TVIFAD++M G++ A ++G S G DD+VIP +K ++ E E + Sbjct: 704 IQNVIDVVYRHCGQKETVIFADRVMGLGYSNAFKAGISFGKDDLVIPPEKETLVGETEEK 763 Query: 661 VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFN 720 E ++Q+Q GL+T GE+YNKV+D W+ D V+ AMM + + KQ+ N Sbjct: 764 AKEYEQQYQDGLITQGEKYNKVVDAWSKCTDDVADAMMKQISSLV-------PGKQI--N 814 Query: 721 SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR 780 SIYMMA SGARGSAAQ++QLAGMRGLMAKP G IIETPI +NF+EGL VL+YF STHGAR Sbjct: 815 SIYMMAHSGARGSAAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGAR 874 Query: 781 KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVL 840 KGLADTALKTANSGYLTRRLVDVAQD ++ E+DCGT G+ ++PVIEGG+V L +R+L Sbjct: 875 KGLADTALKTANSGYLTRRLVDVAQDAIICEEDCGTTNGLTVSPVIEGGEVIASLAERIL 934 Query: 841 GRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYG 900 GR A D++ P T +++V ++ E +L++ ++ V +RSV++CD++ GVC CYG Sbjct: 935 GRSAARDIVNPLTGEVIVKAAQMIQETEVELIDAAGIETVVIRSVLTCDSEEGVCGSCYG 994 Query: 901 RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL 960 RDLARG +N GEA+GVIAAQSIGEPGTQLTMRTFHIGGAA R A +SSI+ G++++ Sbjct: 995 RDLARGTRVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQRGAEQSSIEATFDGTVQV 1054 Query: 961 SNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANW 1020 N VVNSSG ++ SRN E+ L+D R + ++VPYGA L + ++V G +A W Sbjct: 1055 INRNVVVNSSGASIVMSRNCEVALLDINNRERARHRVPYGAKLLVDEAQKVTKGTKLAEW 1114 Query: 1021 DPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKI 1080 DP+T+P+ITE +G + D+ +G ++ DE TG++S VV+D ++ G DLRP + + Sbjct: 1115 DPYTLPIITERAGVAHYVDLTEGLSMREVVDEATGIASKVVVDWKQQPRGA-DLRPRVTL 1173 Query: 1081 VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPR 1140 D +G ++L+ + A+YF+ AI+ +E+ ++++GD LARIP+ES T+DITGGLPR Sbjct: 1174 RDEKGEELLL-ANGLEARYFMSVDAILSVENNTKVNAGDVLARIPRESSKTRDITGGLPR 1232 Query: 1141 VADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE 1200 VA+LFEAR+PK+ AI+++ G V FGK+ K KRR+++ P +G D E +IPK + ++V E Sbjct: 1233 VAELFEARKPKDHAIISDCDGRVEFGKDYKSKRRILVVPEEG-DAIEYLIPKGKHISVQE 1291 Query: 1201 GERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM 1260 G+ V RGD + DG PHDIL++ GV A+ +Y++NE+Q+VYRLQGVKINDKHIEVIVRQM Sbjct: 1292 GDYVRRGDPLMDGNPVPHDILKVLGVEALAQYLINEIQEVYRLQGVKINDKHIEVIVRQM 1351 Query: 1261 LRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFI 1320 L+K I + G + L GEQV+ I N + A+ + L GITKASL T SFI Sbjct: 1352 LQKVEITDPGDTTLLVGEQVDRVEFDIENSKAIREQGRPASGTPVLQGITKASLQTHSFI 1411 Query: 1321 SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDR---------MR 1371 SAASFQETTRVLTEAAV+GK D L+GLKENVIVGRLIPAGTG ++ R M+ Sbjct: 1412 SAASFQETTRVLTEAAVSGKVDSLQGLKENVIVGRLIPAGTGAVMNRLRAIAAKRDKDMQ 1471 Query: 1372 RRAAGEAPAAPQV 1384 E PA P V Sbjct: 1472 VEGESEVPAIPPV 1484 >UniRef50_Q2ST47 DNA-directed RNA polymerase subunit beta' n=5 Tax=Mollicutes RepID=RPOC_MYCCT Length = 1255 Score = 876 bits (2263), Expect = 0.0, Method: Compositional matrix adjust. Identities = 471/1104 (42%), Positives = 673/1104 (60%), Gaps = 131/1104 (11%) Query: 19 AIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRL 78 AIKI LA+PD IRSWS GEV KPETINY+T K E+DGLF RIFGP K+YEC+CG+YK+ Sbjct: 9 AIKIELANPDTIRSWSHGEVLKPETINYKTLKAEKDGLFDERIFGPTKNYECVCGRYKKA 68 Query: 79 K--HRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIE 136 ++G CEKCGVE+T++ VRRERMGHIEL P HIW LK P RI +LD+ +++E Sbjct: 69 NPMNKGKKCEKCGVELTESIVRRERMGHIELEEPVTHIWMLKVAPYRIAAILDLKAKELE 128 Query: 137 RVLYFESYVVIE-GGMTNLERQQIL---------TEEQY----LDALEEFGD--EFDAK- 179 V+YF S++V+E G ++ +++L T E+ LD +++ D D K Sbjct: 129 EVVYFVSHIVLEQGNQSHFLEKEVLDLGSSRITKTREKLQLSILDVIDQINDPEHRDTKK 188 Query: 180 ---------------------------------MGAEAIQALLKSMDLEQECEQLREEL- 205 +GA A++ LL+ +DL +E E ++ +L Sbjct: 189 ANRLLEELKNTSIPFSIDEATSLISKYTNAKFGIGARAVEYLLEKVDLTKEIEAIKIQLE 248 Query: 206 NETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDL 265 N + +R KL KR++ ++ +S +PEWM++ V+PV+PPD+RP++ LDGGRF TS++ Sbjct: 249 NSKKTPNERTKLLKRLETFDSLKRSKQRPEWMVMRVIPVIPPDIRPIIQLDGGRFTTSEI 308 Query: 266 NDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLK 325 NDLYRR+I RN RLK++ ++ AP IIV NEKRMLQEAVDAL DN R+ + + G NKRPLK Sbjct: 309 NDLYRRIIIRNERLKKVKEMGAPSIIVNNEKRMLQEAVDALFDNERKPKPVQGKNKRPLK 368 Query: 326 SLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKL 385 SL ++KGKQGRFRQNLLGKRVDYS RSVI +GP L+++Q GLP++MA+ LFKPF+ L Sbjct: 369 SLTSVLKGKQGRFRQNLLGKRVDYSARSVIAIGPDLKMYQAGLPREMAITLFKPFVIQWL 428 Query: 386 ELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGK 445 + A +K A+KM+ + + VW+ L++VI++ PVLLNRAPTLHRLGIQAFEP L++GK Sbjct: 429 QDHEYAENVKIAEKMLLQNDPKVWEALEQVIKDRPVLLNRAPTLHRLGIQAFEPKLVKGK 488 Query: 446 AIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQD 505 AI+LHPLV A+NADFDGDQMAVHVP+T EA E+RALM+ ++ IL P +G+ I+ P QD Sbjct: 489 AIRLHPLVTTAFNADFDGDQMAVHVPITKEAVAESRALMLGSSAILGPKDGKAIVTPGQD 548 Query: 506 VVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRIT----EYEKDANG 561 ++LG YY+T + NAKG+GM+ + EA Y SG L++ + + ++ E D N Sbjct: 549 IILGNYYLTTEEKNAKGQGMIFSSLDEAFMAYNSGQIHLNSLIGIALSALPEEKFSDKNQ 608 Query: 562 ELVAKTSLKDTTVGRAILWMIVPKGLPY------------------------------SI 591 L S TTVG+ I P+ Sbjct: 609 RL---NSYLLTTVGKLYFNQIFDDNFPWINSNNIWNAKEAVKEFIYDFSQDIDKVIENVQ 665 Query: 592 VNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKH 651 V Q + KK +S ++ + G + T D++ GF+++ +SG ++ D+V K+ Sbjct: 666 VQQPIKKKELSLIIERYFETHGARKTAEMLDKMKDLGFSFSTKSGTTISAGDVVAFTHKY 725 Query: 652 EIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDG 711 + EA+ +V +I + + G++T E+ ++ID+W+ D++ + TV+ +D Sbjct: 726 DEFKEADQKVEQITDFYNMGMLTNSEKKRRIIDVWSEVKDKIQNELA------TVLRKDV 779 Query: 712 QEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQ 771 + N I++M DSGARG+ + QL GMRGLM G I E PI ++FREGL V + Sbjct: 780 K-------NPIFVMVDSGARGNVSNFTQLVGMRGLMNDTKGDIKEIPIKSSFREGLTVSE 832 Query: 772 YFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEG--G 829 YF+STHGARKG+AD ALKTA+SGYLTRRLVDV+Q++VV +DC +G ++ +I+ Sbjct: 833 YFVSTHGARKGMADIALKTADSGYLTRRLVDVSQEIVVVNEDCEPTKGFEVSAIIDTKHD 892 Query: 830 DVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCD 889 +V PL+DR++GR T ED+ +++ NTL+ + + + + + +V +RSV++CD Sbjct: 893 NVIVPLKDRLVGRFTFEDIYD-DDKNLVASANTLIDKNIAEKIIMSGISSVIIRSVLTCD 951 Query: 890 TDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESS 949 GVC CYG +LA ++N GE +GVIAAQSIGEPGTQLTMR FH GG A Sbjct: 952 NKRGVCQKCYGLNLATASVVNIGEPVGVIAAQSIGEPGTQLTMRNFHTGGVAGNVDITQG 1011 Query: 950 I-QVKN-------KGSIK-LSNVKSVVNS----SGKLVIT--SRNTELKLIDEFGRTKES 994 + ++K KG++ +S V VV+ +G VI + N E+K Sbjct: 1012 LPRIKELLDVTTPKGAVAIISEVDGVVSEIEDYNGVFVINIVTENEEVK----------K 1061 Query: 995 YKVPYGAVLAKGDGEQVAGGETVA 1018 YK + +VL G V G+ + Sbjct: 1062 YKTEFNSVLRVEQGSSVMAGQKLT 1085 Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 95/242 (39%), Positives = 141/242 (58%), Gaps = 4/242 (1%) Query: 1129 GGTKDITGGLPRVADLFEARRPK-EPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYE 1187 G DIT GLPR+ +L + PK AI++E+ G+VS ++ G VI V ++ + Sbjct: 1003 AGNVDITQGLPRIKELLDVTTPKGAVAIISEVDGVVSEIEDYNG--VFVINIVTENEEVK 1060 Query: 1188 EMIPKWRQ-LNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGV 1246 + ++ L V +G V G +++G H +L G+ V YI+ EVQ VYRLQG+ Sbjct: 1061 KYKTEFNSVLRVEQGSSVMAGQKLTEGAIDLHQLLEFGGIQDVQNYILKEVQKVYRLQGI 1120 Query: 1247 KINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDL 1306 +I+DK+IE+I++QML K I ++G SD L GE + K ++ + Sbjct: 1121 EISDKYIEIIIKQMLNKVKITDSGDSDLLPGEIITIQNYKEVVQDCIVKSIRPPLSKAQI 1180 Query: 1307 LGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYH 1366 GI KA L + S++S+ASFQ+T RVLT A + GK D+L GLKEN+++G LIPAGTG Sbjct: 1181 FGIKKAPLESSSWLSSASFQDTARVLTRAIIKGKEDKLEGLKENIMLGNLIPAGTGLTGT 1240 Query: 1367 QD 1368 Q+ Sbjct: 1241 QE 1242 >UniRef50_A5USR6 DNA-directed RNA polymerase subunit beta' n=5 Tax=Chloroflexaceae RepID=RPOC_ROSS1 Length = 1504 Score = 855 bits (2209), Expect = 0.0, Method: Compositional matrix adjust. Identities = 467/942 (49%), Positives = 623/942 (66%), Gaps = 95/942 (10%) Query: 157 QQILTEEQYLDALEEFGDEFDAKMGAEAIQALL-KSMDLEQECEQLREELNETNSETKRK 215 ++IL+E++Y E F A MGA A++ ++ +++DL++ E+L+ E+ T + +RK Sbjct: 323 KRILSEQEYRALREIAPGVFRADMGAGAVRDMIVRTIDLDKLAEELQNEVYTTQGQ-RRK 381 Query: 216 KLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINR 275 K TKR++++EAF +SGN+PEWMILTVLPV+PPDLRP+V LDGGRFATSDLNDLYRRVINR Sbjct: 382 KATKRLRVVEAFRKSGNRPEWMILTVLPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINR 441 Query: 276 NNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQ 335 NNRLKRL++L AP+IIVRNEKRMLQEAVDAL+DNGRRGRA++G K LKSL+DM+KGKQ Sbjct: 442 NNRLKRLMELNAPEIIVRNEKRMLQEAVDALIDNGRRGRAVSGKGKHRLKSLSDMLKGKQ 501 Query: 336 GRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIK 395 GRFRQNLLGKRVDYSGRSVI VGP L+LHQCGLPKKMALELFKPF+ +L +G A IK Sbjct: 502 GRFRQNLLGKRVDYSGRSVIVVGPDLKLHQCGLPKKMALELFKPFVMRRLVEKGFAHNIK 561 Query: 396 AAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCA 455 +AK++VER VWD+L+EVI+++ VLLNRAP+LHRL IQAFE LIEG AIQLHPLVCA Sbjct: 562 SAKRIVERVRPEVWDVLEEVIKDYLVLLNRAPSLHRLSIQAFEAKLIEGSAIQLHPLVCA 621 Query: 456 AYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTR 515 A+NADFDGDQMAVHVPL+ +AQ EAR M+S N+LSPA G+PII PSQD+VLG YY+T Sbjct: 622 AFNADFDGDQMAVHVPLSRKAQEEARMRMLSKYNLLSPATGDPIITPSQDIVLGCYYLTM 681 Query: 516 DCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRIT-----EYEK-------DANGEL 563 AKG G + EA Y GL + A + VR+T E ++ D NG Sbjct: 682 VKDGAKGSGKMFASIDEALLAYDKGLIDIQAPIFVRMTGTVYGESDRPVRMLSPDENG-- 739 Query: 564 VAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCY-------------- 609 A L +TT+GR I + + P N+ + KK + +++ CY Sbjct: 740 -APRMLLETTIGRIIFNNELLE--PLRFRNRLIAKKGLREIIADCYKYYTNLNNLTEADL 796 Query: 610 ----------------RILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEI 653 R G + T AD+I GF YA R G ++G+DD+ IP KK +I Sbjct: 797 DTIRAMYGDRPRDDLARYFGSEMTASQADRIKTLGFRYATRGGMTIGVDDIEIPPKKQDI 856 Query: 654 ISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQE 713 ++EAE V E++ QF+ GL+T ERY ++++IW A + ++A+ +L Sbjct: 857 LAEAEKRVTEVERQFRRGLITEEERYREIVEIWQNATKQTTEAVKQHLN----------- 905 Query: 714 EKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYF 773 F + MM +S ARG+ Q+ Q+AGMRGLM+ P G IIE PI +NFREGL+VL+YF Sbjct: 906 ----PFGPVAMMVNSAARGNINQLSQMAGMRGLMSDPTGRIIELPIKSNFREGLSVLEYF 961 Query: 774 ISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKE 833 +STHG RKGLADTAL+TA++GYLTRRL+DVAQD +VT DDCGT EG+ I D +E Sbjct: 962 VSTHGGRKGLADTALRTADAGYLTRRLIDVAQDNIVTIDDCGTDEGLW----IYRADDRE 1017 Query: 834 PLRD---RVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDT 890 L+D R+LGR+ A ++ P T +IL RN + E +E ++DAV VRS ++C Sbjct: 1018 VLQDFEQRILGRLLAAPLVDPRTGEILANRNDEIDEALVRKCKELAIDAVYVRSPLACKA 1077 Query: 891 DFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSI 950 D+G+C CYGR+LA G +++ GEA+G+IAAQSIGEPGTQLT+RTFH GG AS A+ Sbjct: 1078 DYGICRMCYGRNLATGKLVDIGEAVGIIAAQSIGEPGTQLTLRTFHTGGVAS---ADDIT 1134 Query: 951 QVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLI--DEFGRTK--------ESYKVP-- 998 Q G ++ + GK ++ + ++L+ DE + + + +++P Sbjct: 1135 Q----GLPRVQEIFEARTPKGKAILAEIDGIVELVREDEVRKIRVVATELYTDDHELPPH 1190 Query: 999 YGAVLAKGDGEQVAGGETVAN---WDPHTMPVITEVSGFVRF 1037 Y V+A DG QV G+ +A D + P++ ++G VR Sbjct: 1191 YEPVVA--DGAQVNEGDVLAQSNRADLNGEPIVARIAGVVRI 1230 Score = 225 bits (574), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 94/132 (71%), Positives = 116/132 (87%) Query: 16 EFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKY 75 +F AI+I+LASP+ I SWS GEV KPETINYRT KPERDGLFC RIFGP KD+EC CGKY Sbjct: 6 DFSAIRISLASPEDILSWSHGEVTKPETINYRTLKPERDGLFCERIFGPTKDWECYCGKY 65 Query: 76 KRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDI 135 KR++++GV+C+KCGVEVT++KVRRERMGHI LASP +HIWF+K PSR+GLLLD+ R++ Sbjct: 66 KRVRYKGVVCDKCGVEVTRSKVRRERMGHISLASPVSHIWFVKGTPSRLGLLLDISPRNL 125 Query: 136 ERVLYFESYVVI 147 ERVLYF SY+++ Sbjct: 126 ERVLYFASYMIV 137 Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 131/314 (41%), Positives = 173/314 (55%), Gaps = 50/314 (15%) Query: 1111 DGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETK 1170 DG Q++ GD LA+ D+ G EP I+A I+G+V G Sbjct: 1197 DGAQVNEGDVLAQ-----SNRADLNG---------------EP-IVARIAGVVRIGAGQ- 1234 Query: 1171 GKRRLVITPVDGSDPYEEMI-PKWRQL--NVFEGERVERGDVISDGPEAPHDILRLRGVH 1227 I+ ++ E++ P +L + G RV G +++G P ++L L+G Sbjct: 1235 ------ISVINEEREVREVVAPHTARLAPGIENGARVVAGQHLTEGSADPQELLALQGRE 1288 Query: 1228 AVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKI 1287 AV RY+VNE Q VYR QGV INDKHIEVIVRQMLR+ I G +D+L GE ++ + Sbjct: 1289 AVQRYLVNEAQKVYRSQGVDINDKHIEVIVRQMLRRVRIEEPGDTDYLPGELIDSTEFVR 1348 Query: 1288 ANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGL 1347 N E+ + G AT S LLGITKASL T+SF++AASFQETTRVLTEAA+ GK D LRGL Sbjct: 1349 KNAEIISQGGEPATASTMLLGITKASLTTDSFLAAASFQETTRVLTEAAITGKVDYLRGL 1408 Query: 1348 KENVIVGRLIPAGTGYAYHQDRMRRRAAGE--------APAAPQVTAE------DASASL 1393 KENV++G+LIPAGTG RR+ A E APA E +A +L Sbjct: 1409 KENVVIGKLIPAGTGI-----EKRRQLAEEIIGELANVAPATSTAVVEQERPDREADEAL 1463 Query: 1394 AELLNAGLGGSDNE 1407 L A +GG ++ Sbjct: 1464 RRRLRALIGGDGDD 1477 >UniRef50_Q05FH9 DNA-directed RNA polymerase subunit beta' n=17 Tax=Candidatus Carsonella ruddii RepID=RPOC_CARRP Length = 1292 Score = 830 bits (2144), Expect = 0.0, Method: Compositional matrix adjust. Identities = 470/1355 (34%), Positives = 739/1355 (54%), Gaps = 107/1355 (7%) Query: 17 FDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYK 76 F + I +AS I SWSFGEV IN++ KPE +GLFC +IF D+E C K K Sbjct: 6 FKKVSIKMASSSKILSWSFGEVTHSNFINFKNLKPEPNGLFCLKIFS---DFELCCLKKK 62 Query: 77 RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIE 136 H + ++ T ++GHI+L P HIW++KS S I +L++ + +E Sbjct: 63 CFCHND---KFLNLKKAHT---GYKVGHIKLFYPAVHIWYIKSSHSNISNILNLSYKILE 116 Query: 137 RVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKM--------GAEAIQAL 188 +++ F+ VVI+ +++ + FD K+ GA+A++ L Sbjct: 117 KIINFKLKVVIKSYDIKIKKFNLFI--------------FDKKIKNIIFTLSGAKALKKL 162 Query: 189 LKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPD 248 L +L +C L+ ++ + NS +K + K I + F SGNKP WM+L +PVLPP Sbjct: 163 LSDRELFIDCLILKIKIKKCNSFSKLFSILKHINKILIFYYSGNKPSWMVLKKIPVLPPR 222 Query: 249 LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLD 308 +RPL+ L +FA+SD+N+LY+ V+ RN +LK++ P ++ NE+ LQE++ AL D Sbjct: 223 MRPLIALSEKKFASSDINELYKIVLERNYKLKKMTTYLDPKQLLINERISLQESIYALFD 282 Query: 309 NGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGL 368 N + I S+KR LKS + +IKGK GRFRQNLLGKRVD+SGR+VITV P L L++C + Sbjct: 283 NEKLINPILTSSKRVLKSFSSLIKGKYGRFRQNLLGKRVDFSGRTVITVEPNLFLYECKI 342 Query: 369 PKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPT 428 P +ALELFKP +Y +L+ + + TTI ++ + + +L ++ + ++LNRAPT Sbjct: 343 PIYIALELFKPILYYELKKKKIITTISFIDDYYKKNKKQIILLLKNKVKSYFIMLNRAPT 402 Query: 429 LHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTN 488 LHR+ Q+F+ +L E K I++HPLVC YNADFDGDQMA+H+PLT A++E+ L++S N Sbjct: 403 LHRMNFQSFKILLTEDKTIKIHPLVCLCYNADFDGDQMAIHLPLTNNAKVESNYLLLSIN 462 Query: 489 NILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARV 548 NI+SP+NG II+P+QD+++G+YY T D K + + L + + + + ++ Sbjct: 463 NIISPSNGNAIIIPTQDIIMGIYYFTFD---FKNKSISLNDINDI--INFFEFNNYNFQI 517 Query: 549 KVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTC 608 ++ +K +TT+GR I+ + K Y +N KK ++ ++ Sbjct: 518 NIKFNNKKKI------------NTTLGRIIINYLFFKNFDY-FLNIVFKKKILTYLIKYL 564 Query: 609 YRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQF 668 + L +I +++ GF + SG ++ D++ E++ F Sbjct: 565 FDFNQLSKIIIILEKLKKIGFLISTYSGITISYFDLI-----------------EVKNTF 607 Query: 669 QSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADS 728 V +YN +I++ + ++ + + + IN+ G ++ N++++M DS Sbjct: 608 LINKVVFKLKYNN--NIFSIV-ELLNNFFVKIIIKKIQINKTGLKKT----NNLFIMLDS 660 Query: 729 GARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTAL 788 G+RGS QI+QL RG +K +G II+ PI N + GLN+ YFIST GARKGL DT+L Sbjct: 661 GSRGSMLQIKQLIAFRGFFSKSNGDIIKDPIFDNLKNGLNMKNYFISTFGARKGLTDTSL 720 Query: 789 KTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDV 848 KTANSGYLTR+L+DV+ DLV+ + DC T GI + + L + GR+ V Sbjct: 721 KTANSGYLTRKLIDVSHDLVIYKIDCKTKTGIKI--FLNSYFTLVELYKNLYGRLLLFSV 778 Query: 849 LKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHI 908 IL+ NTL+ + LL + ++ + VRSV+ C ++ GVC CYG DL+ I Sbjct: 779 --SLKNKILLKENTLIDNKVLFLLIKKKINTIFVRSVLFCISNRGVCCFCYGIDLSTNKI 836 Query: 909 INKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVN 968 + G ++G+I+AQSIGEPGTQLTMRTFH GG AS ++ + N G +K K V+N Sbjct: 837 VLIGVSVGIISAQSIGEPGTQLTMRTFHTGGVASYFFYSDNLIISNSGFVKFKKCKCVIN 896 Query: 969 SSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVI 1028 G+++I S E + ++ E YK YG + +G + + N++ + + Sbjct: 897 KFGEVIIVSLYGEFMIFNKI--ILEKYKFYYGTKIKFRNGFLIKKNTKLINFNDNNFYIY 954 Query: 1029 TEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDV 1088 +E G+V F + + E D+ K+ + + Sbjct: 955 SENIGYVYFKK--ENNIVKNYCLE----------DNKFYYKTLKNFK------------I 990 Query: 1089 LIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEAR 1148 I + YF+P + + I G+ +A++ + I GGLPR+++LFEAR Sbjct: 991 TIINKSIKKNYFIPKNFNIVVYCYDYIFPGEIIAKLVSVTILKSSIIGGLPRLSELFEAR 1050 Query: 1149 RPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEM-IPKWRQLNVFEGERVERG 1207 PK A+L+EI G+ K +IT + Y+E + R+L + G+ V+ G Sbjct: 1051 IPKLKALLSEIDGVC---KIKFSHLNYIITIISKFGFYKEYTLSCLRKLYINNGDYVKIG 1107 Query: 1208 DVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIV 1267 D++SDG ++I+ L ++ + Y VNE+ +Y Q + +N KHIE+I++QM +K I+ Sbjct: 1108 DILSDGKPDLNEIINLISINYLLSYFVNEINSIYFPQNIYVNCKHIELILKQMTKKVKII 1167 Query: 1268 NAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQE 1327 +G S +G+ + N N + + Y R + GITK SL + SF SAASFQE Sbjct: 1168 FSGESSCQQGDILFLEDAINENFSTLVNSRRLSYYKRIVTGITKTSLESLSFFSAASFQE 1227 Query: 1328 TTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362 T ++L +A+ + D L GLKENV+VGRLIPAGTG Sbjct: 1228 TNKILVNSAIKNRTDYLLGLKENVLVGRLIPAGTG 1262 >UniRef50_Q1AU23 DNA-directed RNA polymerase subunit beta' n=11 Tax=Bacteria RepID=RPOC_RUBXD Length = 1295 Score = 829 bits (2142), Expect = 0.0, Method: Compositional matrix adjust. Identities = 438/815 (53%), Positives = 552/815 (67%), Gaps = 57/815 (6%) Query: 151 MTNLERQQILTEEQYLDALEE-FGDE------FDAKMGAEAIQALLKSMDLEQECEQLRE 203 LE +QI+ +E+ +++ FGDE F MGAEAI+ L++ +DLE+E +LR+ Sbjct: 247 FQTLEPRQIVDDEELFREMKDRFGDEYGYGVYFRGGMGAEAIRDLIRQVDLEKEARELRQ 306 Query: 204 ELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATS 263 + E+ + KR+K KR+K+++AF SGNKPEWMIL +PVLPPDLRP+V LDGGRFATS Sbjct: 307 VVGESRGQ-KRQKAIKRLKVVDAFRTSGNKPEWMILDAIPVLPPDLRPMVQLDGGRFATS 365 Query: 264 DLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRP 323 DLNDLYRRVINRNNRLKRLLDL APD+IV NEKRMLQEAVDAL DNGRRGRA+TG+ RP Sbjct: 366 DLNDLYRRVINRNNRLKRLLDLGAPDVIVNNEKRMLQEAVDALFDNGRRGRAVTGAGNRP 425 Query: 324 LKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYG 383 LKSL+DM+KGKQGRFRQNLLGKRVDYSGRSVI VGP L +HQCGLP+ MA+ELFKPF+ Sbjct: 426 LKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPQLEMHQCGLPRLMAVELFKPFVMK 485 Query: 384 KLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIE 443 L R LA I++AK+MVER VWD+L++VI+EHPVLLNRAPTLHRLGIQAFEPVL+E Sbjct: 486 VLVDRALAPNIRSAKQMVERLRPEVWDVLEDVIKEHPVLLNRAPTLHRLGIQAFEPVLVE 545 Query: 444 GKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPS 503 GKAIQ+HPLVCAA+NADFDGDQMAVHVPL+ EAQ EAR LM+ST NIL PA+G P+ VPS Sbjct: 546 GKAIQIHPLVCAAFNADFDGDQMAVHVPLSPEAQAEARILMLSTQNILKPADGFPVAVPS 605 Query: 504 QDVVLGLYYMTR--DCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANG 561 QD+VLGLYY+T + + +L EA+ YR G LH +V +R G Sbjct: 606 QDMVLGLYYITYAGEDFEEREPKALLASYAEADNAYREGSLRLHDKVILR-------REG 658 Query: 562 ELVAKTSLKDTTVGRAILWMIVPKGL-----------PYSIVNQALGKKAISKMLNTCYR 610 E + +TT+GR + + + L Y VN L K I +++ Sbjct: 659 ERI------ETTLGRVLFNESIERTLRGYLGDAYNPAAYRFVNHELKKGEIKQLVQQYVE 712 Query: 611 ILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQS 670 + D + + GF A +G S+G +D+V+PE+K EI+ + E V E++EQ+++ Sbjct: 713 RYPTELVSQLLDTLKHVGFHTATLAGISIGKNDIVVPEQKREILEKYEKLVEEVEEQWEA 772 Query: 671 GLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGA 730 G ++ ER +VI +W A + V +AM NL N IYMMA+SGA Sbjct: 773 GFISDEERAERVIGLWTQAKNEVEEAMKANLW---------------KLNPIYMMANSGA 817 Query: 731 RGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKT 790 RGS +QI QLAGMRGLM G II+ P+ +NF EGL VL+YF STHGARKG ADTAL+T Sbjct: 818 RGSYSQITQLAGMRGLMTNAKGEIIDEPVKSNFMEGLTVLEYFTSTHGARKGQADTALRT 877 Query: 791 ANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLK 850 A+SGYLTRRLVDVAQD+V+ E+DCGT I + +E G +P D V R A D++ Sbjct: 878 ADSGYLTRRLVDVAQDVVIREEDCGTDGYIELPLYLEDGQ-GDP-NDSVAARYLARDLVN 935 Query: 851 PGTADILVPRNT----LLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARG 906 P T +++ T L E W + L + V VR+ C+ GVC CYGR LA Sbjct: 936 PETGEVVAEAGTDITRPLFEAWLEELPRET--KVPVRTPTKCENPHGVCQKCYGRSLATN 993 Query: 907 HIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAA 941 ++ GEA+G+IAAQSIGEPGTQLTMRTFH GG + Sbjct: 994 RPVDVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVS 1028 Score = 209 bits (532), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 124/243 (51%), Positives = 157/243 (64%), Gaps = 13/243 (5%) Query: 1130 GTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKR--RLVITPVDGSDPYE 1187 G +DIT GLPRV +LFEAR PK A++++I GIVS +ET +R R+V+T DGS+ E Sbjct: 1029 GVEDITAGLPRVVELFEARHPKGEAVISDIDGIVSL-EETDSERLVRVVVTAPDGSEARE 1087 Query: 1188 EMIPKWRQL---NVFEGERVERGDVISDGPEAPHDILRL-----RGVHAVTRYIVNEVQD 1239 + RQL + +G + I++G PH IL RG A RY+V+EVQ Sbjct: 1088 YRVE--RQLLRPEIVDGAEIRANTPITEGSLYPHQILENDLRYGRGTTATERYLVDEVQK 1145 Query: 1240 VYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVG 1299 VYR QGV I+DKHIE+IVRQMLRK + G + FL + + V N +E G Sbjct: 1146 VYRAQGVDIHDKHIEIIVRQMLRKVLVEEPGDTRFLPEQVADRFSVLAENERVEEEGGRP 1205 Query: 1300 ATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPA 1359 A + L+GITKASLATESF+SAASFQET RVLT+AA+ GK D L GLKENVI+G+LIPA Sbjct: 1206 AEFHTILMGITKASLATESFLSAASFQETARVLTDAAIEGKVDNLTGLKENVIIGKLIPA 1265 Query: 1360 GTG 1362 TG Sbjct: 1266 ATG 1268 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 91/164 (55%), Positives = 121/164 (73%), Gaps = 4/164 (2%) Query: 5 LKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGP 64 ++ L+ + I I LAS D IR WS GEV KPETINYRT +PE+DGLF RIFGP Sbjct: 1 MQALERDIDINRLEKISIGLASADEIREWSRGEVTKPETINYRTLRPEKDGLFDERIFGP 60 Query: 65 VKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRI 124 KD+EC CGKYKR++ +G+ICE+CGVEVT+ +VRR+RMGHIELA+P AH+WF+K +PSR+ Sbjct: 61 TKDWECYCGKYKRIRFKGIICERCGVEVTRARVRRDRMGHIELAAPVAHVWFVKGVPSRM 120 Query: 125 GLLLDMPLRDIERVLYFESYVVI----EGGMTNLERQQILTEEQ 164 G LLD+ +D++RVLYF S +V EG +++R + EE+ Sbjct: 121 GYLLDISPKDLDRVLYFASSIVTWVDREGRANDIDRLRQQVEEE 164 >UniRef50_A4FPP2 DNA-directed RNA polymerase subunit beta' n=54 Tax=Bacteria RepID=RPOC_SACEN Length = 1303 Score = 825 bits (2132), Expect = 0.0, Method: Compositional matrix adjust. Identities = 429/801 (53%), Positives = 554/801 (69%), Gaps = 30/801 (3%) Query: 151 MTNLERQQILTEEQ-YLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETN 209 T LE +Q++ +E Y + + FG+ F MGAE+IQALL+ D+ E +QLRE + Sbjct: 226 FTKLEPRQLIADELLYRELYDRFGEYFTGGMGAESIQALLQDFDINAEADQLRETIRSGK 285 Query: 210 SETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLY 269 + K + L KR+K++ AF +GN P M+L +PV+PPDLRP+V LDGGRFATSDLNDLY Sbjct: 286 GQKKLRAL-KRLKVVAAFQATGNNPSGMVLNCVPVIPPDLRPMVQLDGGRFATSDLNDLY 344 Query: 270 RRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLAD 329 RRVINRNNRLKRL+DL AP+IIV NEKRMLQE+VDAL DNGRRGR +TG RPLKSL+D Sbjct: 345 RRVINRNNRLKRLIDLGAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSD 404 Query: 330 MIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRG 389 ++KGKQGRFRQNLLGKRVDYSGRSVI VGP L+LHQCGLPK+MA+ELFKPF+ +L Sbjct: 405 LLKGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKEMAVELFKPFVMKRLVDLN 464 Query: 390 LATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQL 449 A IK+AK+MVER+ VWD+L+EVI EHPVLLNRAPTLHRLGIQAFEP L+EGKAIQL Sbjct: 465 HAQNIKSAKRMVERQRPQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQL 524 Query: 450 HPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLG 509 HPLVC A+NADFDGDQMAVH+PL+ EAQ EAR LM+S+NNILSPA+G P+ +P D+V G Sbjct: 525 HPLVCEAFNADFDGDQMAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTG 584 Query: 510 LYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEY----EKDANGELVA 565 LY++TR AKGEG + EA + G L A+VK+R+ + E+ Sbjct: 585 LYHLTRQLDGAKGEGQSFSSVGEAIMAFDRGGLDLQAKVKIRVRDLVPNAEQRPEDWEPG 644 Query: 566 KTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIM 625 + L +TT+GR ++P+ P+ VN L KK + ++N + D++ Sbjct: 645 QPWLAETTLGRVWFNELLPEDYPF--VNDLLPKKRQAAIVNDLAERYPMVTVAQTLDKLK 702 Query: 626 YTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDI 685 GF +A RSG +V I D+V+P K EI+ EA+ +++++++ G ++ ER +++ + Sbjct: 703 DAGFHWATRSGVTVSISDVVVPPNKTEILDGYEAKADQVEKRYRRGALSYQERNAELVKV 762 Query: 686 WAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRG 745 W AA D V++AM N + NSI M+ SGA G+ Q+ QLAGMRG Sbjct: 763 WTAAKDEVAEAMEANFPED---------------NSISMIVKSGAAGNMTQVVQLAGMRG 807 Query: 746 LMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQ 805 L++ P G I PI ANFREGL+VL+YFIS HGARKGLADTAL+TA+SGYLTRRLVDV+Q Sbjct: 808 LVSNPKGEYIPRPIKANFREGLSVLEYFISNHGARKGLADTALRTADSGYLTRRLVDVSQ 867 Query: 806 DLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRD-----RVLGRVTAEDVLKPGTADILVPR 860 D++V E DCGT GI M P+ E + LRD V R TAEDV ++++ R Sbjct: 868 DVIVRETDCGTERGIRM-PIAEKLPDGKLLRDAHVETSVYARTTAEDVTD-SDGNVVLAR 925 Query: 861 NTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAA 920 + L + + L V VKVRSV++C++ GVCA CYGR +A G +++ GEA+G++AA Sbjct: 926 GSDLGDPAIEKLLAAGVTKVKVRSVLTCESGVGVCAVCYGRSMATGKLVDVGEAVGIVAA 985 Query: 921 QSIGEPGTQLTMRTFHIGGAA 941 QSIGEPGTQLTMRTFH GG A Sbjct: 986 QSIGEPGTQLTMRTFHQGGVA 1006 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 99/207 (47%), Positives = 140/207 (67%), Gaps = 16/207 (7%) Query: 17 FDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYK 76 FD ++I LA+ D IR WS+GEVKKPETINYRT KPE+DGLFC +IFGP +D+EC CGKYK Sbjct: 7 FDELRIGLATADDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWECYCGKYK 66 Query: 77 RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIE 136 R++ +G+ICE+CGVEVT+ KVRRERMGHIELA+ HIW+ K +PSR+G LLD+ +D+E Sbjct: 67 RVRFKGIICERCGVEVTRAKVRRERMGHIELAASVTHIWYFKGVPSRLGYLLDLAPKDLE 126 Query: 137 RVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQ-ALLKSMDLE 195 +++YF +YV+ T + ++ T +A++G E Q A + DLE Sbjct: 127 KIIYFAAYVITSVN-TEMRHNEMST--------------LEAEIGVERKQIADQRDADLE 171 Query: 196 QECEQLREELNETNSETKRKKLTKRIK 222 ++L +L E E + + +++K Sbjct: 172 ARAQKLEADLAELEQEGAKSDVRRKVK 198 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 119/283 (42%), Positives = 175/283 (61%), Gaps = 12/283 (4%) Query: 1133 DITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDP--YEEMI 1190 DIT GLPRV +LFEAR PK A +A+ G + ++ ++ I P DGS+ Y+++ Sbjct: 1009 DITTGLPRVQELFEARVPKGKAPIADAPGRIRM-EDNDRYWKITIIPDDGSEEIVYDKLS 1067 Query: 1191 PKWR---------QLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVY 1241 + R + + +G+ V+ G + +G PH++LR+ G ++V EVQ+VY Sbjct: 1068 KRQRLAAISVDGTERQITDGDHVDVGQQLLEGAVDPHEVLRVMGPREAQLHLVREVQEVY 1127 Query: 1242 RLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGAT 1301 R QGV I+DKH+EVIVRQMLR+ I+++G+++FL G VE S+ + NR + A G A+ Sbjct: 1128 RSQGVGIHDKHVEVIVRQMLRRVIIIDSGATEFLPGSPVERSQFEGENRRVVAEGGDPAS 1187 Query: 1302 YSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGT 1361 L+GITKASLATES++SAASFQETTR+LT AA+ G D+L GLKENVI+G+LIPAGT Sbjct: 1188 GRPVLMGITKASLATESWLSAASFQETTRILTNAAIEGASDKLVGLKENVIIGKLIPAGT 1247 Query: 1362 GYAYHQDRMRRRAAGEAPAAPQVTAEDASASLAELLNAGLGGS 1404 G +++ + AA + + D ++ G G + Sbjct: 1248 GINRYRNIQVQPTEEARAAAYAIPSYDDGYYTPDVFGTGTGAA 1290 >UniRef50_A8LC63 DNA-directed RNA polymerase subunit beta' n=26 Tax=Bacteria RepID=RPOC_FRASN Length = 1296 Score = 819 bits (2115), Expect = 0.0, Method: Compositional matrix adjust. Identities = 443/893 (49%), Positives = 581/893 (65%), Gaps = 44/893 (4%) Query: 151 MTNLERQQILTEEQYLDALEE-FGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETN 209 N++ Q + +E L + FG F+ MGAEA+Q L DL E E LRE + Sbjct: 226 FKNMKVQDLEPDELLFRELRDRFGQYFEGGMGAEALQHRLADFDLAAEAESLRETIRSGK 285 Query: 210 SETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLY 269 + K + L KR+K++ AF+ + N P M+L +PV+PPDLRP+V LDGGRFATSDLNDLY Sbjct: 286 GQKKARAL-KRLKVVSAFLNTRNSPMGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLY 344 Query: 270 RRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLAD 329 RRVINRNNRLKRLLDL AP+IIV NEKRMLQEAVDAL DNGRRGR +TG RPLKSL+D Sbjct: 345 RRVINRNNRLKRLLDLGAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSD 404 Query: 330 MIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRG 389 M+KGKQGRFRQNLLGKRVDYSGRSVI VGP L+LHQCGLPK+MALELFKPF+ +L Sbjct: 405 MLKGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLN 464 Query: 390 LATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQL 449 A IK+AK+MVER VVWD+L+EVI EHPVLLNRAPTLHRLGIQAFEP L+EGKAIQ+ Sbjct: 465 HAQNIKSAKRMVERARPVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQI 524 Query: 450 HPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLG 509 HPLVC A+NADFDGDQMAVH+PL+ EAQ EAR LM+S+NNILSPA+G P+ +PS D+V G Sbjct: 525 HPLVCTAFNADFDGDQMAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPSLDMVTG 584 Query: 510 LYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGE-----LV 564 +++++R A GEG + EA+ + + L AR++VR+ E A L Sbjct: 585 VFHLSRVSEGAIGEGRFFSSVAEAQMAFDAREIHLQARIQVRLRESTPPAEWAPPADWLP 644 Query: 565 AKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQI 624 +TT GR +L +P+G P+ +N L KKA + ++N D + Sbjct: 645 GDPFTLETTFGRCLLNEALPEGYPF--INAQLNKKAQAAIVNDLAERYPKIQVAATLDAL 702 Query: 625 MYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVID 684 GF +A RSG +V I+D+V P K +I+ E E +++QF G ++ ER ++++ Sbjct: 703 KSAGFYWATRSGVTVAIEDVVAPPNKAQILDEYEQRAERVEKQFGRGFLSDEERRSELVQ 762 Query: 685 IWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMR 744 IW A +++++AM N ET N +Y + +SGA G+ QIRQLAGMR Sbjct: 763 IWTEATNKIAEAMEANF-PET--------------NPVYTLVNSGAAGNMMQIRQLAGMR 807 Query: 745 GLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVA 804 GL++ P G II PI ANFREGL V++YFISTHGARKGLADTAL+TA+SGYLTRRLVDV+ Sbjct: 808 GLVSNPKGEIIPRPIKANFREGLTVVEYFISTHGARKGLADTALRTADSGYLTRRLVDVS 867 Query: 805 QDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDR-----VLGRVTAEDVLKPGTADILVP 859 QD++V E+DCGT GI +T + G +RDR R A D + +++VP Sbjct: 868 QDVIVREEDCGTERGI-LTRIARKGPDGVLVRDRYAETSAYARSLASDAVD-AQGEVVVP 925 Query: 860 RNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIA 919 + + E +++V+VRS ++C++ GVCAHCYGR LA G +++ GEA+G++A Sbjct: 926 AGADAGDVVIGQIIEAGIESVRVRSALTCESRMGVCAHCYGRSLATGKLVDVGEAVGIVA 985 Query: 920 AQSIGEPGTQLTMRTFHIGGAASRAAAESSIQV-------KNKGSIKLSNVKSVVNSSGK 972 AQSIGEPGTQLTMRTFH GG A + +V KG +S V V K Sbjct: 986 AQSIGEPGTQLTMRTFHSGGVAGDDITQGLPRVVELFEARSPKGKAPISEVTGRV----K 1041 Query: 973 LVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANW--DPH 1023 + T + ++ ++ + G + +Y V + L +GE+V G + + DPH Sbjct: 1042 IEETEKTFKVVIVPDDGSEEIAYPVSRRSRLRVREGERVEVGAQLIDGAVDPH 1094 Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 101/207 (48%), Positives = 142/207 (68%), Gaps = 16/207 (7%) Query: 17 FDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYK 76 FD ++I LA+ D IR WSFGEVKKPETINYRT KPE+DGLFC +IFGP +D+EC CGKYK Sbjct: 7 FDELRIGLATADDIRQWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWECYCGKYK 66 Query: 77 RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIE 136 R++ +G+ICE+CGVEVT+ KVRRERMGHIELA+P HIW+ K +PSR+G LLD+ +D+E Sbjct: 67 RVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDLAPKDLE 126 Query: 137 RVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQAL-LKSMDLE 195 +V+YF +Y++ + + + R L LE A++G E Q K+ D+E Sbjct: 127 KVIYFAAYMITKVDIDSRHRD--------LPTLE-------ARIGVEKQQLEDKKNADVE 171 Query: 196 QECEQLREELNETNSETKRKKLTKRIK 222 +L E+L + +E + ++++ Sbjct: 172 TRQRKLEEDLAQLEAEGAKGDARRKVR 198 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 127/256 (49%), Positives = 175/256 (68%), Gaps = 4/256 (1%) Query: 1128 SGGT--KDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDP 1185 SGG DIT GLPRV +LFEAR PK A ++E++G V +ET+ ++VI P DGS+ Sbjct: 1003 SGGVAGDDITQGLPRVVELFEARSPKGKAPISEVTGRVKI-EETEKTFKVVIVPDDGSEE 1061 Query: 1186 YEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQG 1245 + + +L V EGERVE G + DG PH++LR+ G V ++V++VQ+VYR QG Sbjct: 1062 IAYPVSRRSRLRVREGERVEVGAQLIDGAVDPHEVLRILGPRQVQLHLVDQVQEVYRSQG 1121 Query: 1246 VKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRD 1305 V I+DKHIE+I+RQML++ ++ +G + L GE VE +R + NR + G A+ Sbjct: 1122 VSIHDKHIEIIIRQMLKRVNVLESGETTLLPGELVERARFEGENRRVVEIGGQPASARPV 1181 Query: 1306 LLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAY 1365 L+GITKASLATES++SAASFQETTRVLT+AA+ + D L GLKENVI+G+LIPAGTG + Sbjct: 1182 LMGITKASLATESWLSAASFQETTRVLTDAAINARSDSLVGLKENVIIGKLIPAGTGISR 1241 Query: 1366 HQDRMRRRAAGEAPAA 1381 +++ +R EA AA Sbjct: 1242 YRN-IRVEPTDEARAA 1256 >UniRef50_UPI0001C30E3D DNA-directed RNA polymerase, beta'''' subunit n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C30E3D Length = 1355 Score = 815 bits (2106), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/826 (53%), Positives = 551/826 (66%), Gaps = 61/826 (7%) Query: 172 FGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSG 231 FG+ F MGAE+++ LL+ +DL+ E E+L +EL +T K+ + KR+K++ AF+QSG Sbjct: 280 FGEYFRGGMGAESVRDLLEQVDLDAEREEL-QELVKTAKGQKQSRSVKRLKVVSAFIQSG 338 Query: 232 NKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDII 291 N+PE MIL +PV+PP+LRP+V LDGGRFATSDLNDLYRRVINRNNRLKRLLDL AP+II Sbjct: 339 NRPEMMILEAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPEII 398 Query: 292 VRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSG 351 V NEKRMLQEAVDAL DNGRRGR +TG RPLKSL+DM+KGKQGRFRQNLLGKRVDYSG Sbjct: 399 VNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSG 458 Query: 352 RSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDI 411 RSVI GP L+LHQCGLPK MALELFKPFI +L R A IKAAKKMV+ VWD+ Sbjct: 459 RSVIVSGPSLKLHQCGLPKLMALELFKPFIMARLVERKAAQNIKAAKKMVDSMIPEVWDV 518 Query: 412 LDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVP 471 L+EVI EHPVLLNRAPTLHRLGIQAFEP+L+EGKAIQ+HPLVC A+NADFDGDQMAVH+P Sbjct: 519 LEEVIHEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQVHPLVCHAFNADFDGDQMAVHLP 578 Query: 472 LTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTR----------DCVNAK 521 L+ EAQ EAR LM+S NNILSPA+G P+ P+QD++LG YY+T D A Sbjct: 579 LSAEAQAEARILMLSANNILSPAHGAPLATPTQDMILGAYYLTYGPEADELAKVDPARAA 638 Query: 522 GEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWM 581 V +EAE Y G+ LH + R + G ++ TTVGR I Sbjct: 639 KRPHVYRTAQEAEWSYEHGVTRLHDLAEFRPAGRQ---GGHIL-------TTVGRIIYND 688 Query: 582 IVPKGL-----------PYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFA 630 + + + Y VN+++ K+ ++ ++ + G D GF Sbjct: 689 KIERAIRETLGADYDPASYEFVNRSMKKRDTTQFVDDLVQAYGAATISQVLDAFKDLGFR 748 Query: 631 YAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAAN 690 YA ++G +V +D+VIP +K EI+ + E EVAEIQ+Q+ GL+T ER + V+D W AA Sbjct: 749 YATQAGITVSKNDVVIPPEKGEILGKYEGEVAEIQDQYDMGLITEEERKDAVVDRWNAAT 808 Query: 691 DRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKP 750 D V++AM E+ N I+MMA+SGARGS QIRQLAGMRGLMA P Sbjct: 809 DEVAEAM---------------EQHFNELNPIFMMANSGARGSFKQIRQLAGMRGLMANP 853 Query: 751 DGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVT 810 G IIE P+ ANF EGL+V++YF STHGARKGLADTAL+TA+SGYLTRRLVDVAQD+++ Sbjct: 854 KGEIIERPVKANFMEGLDVIEYFTSTHGARKGLADTALRTADSGYLTRRLVDVAQDVIIR 913 Query: 811 EDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCD 870 ++DCG + + + GG EP D V+GRV A D L P + ++ + + Sbjct: 914 QEDCGAEQYVELDLYKAGG---EP-NDNVVGRVAALD-LGPRKSVVVERGIEMSRADFAA 968 Query: 871 LLEENSVDAVK--VRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGT 928 LLE D VK VRSV+ C+ GVC CYGR +A G+ G+A+G+IAAQSIGEPGT Sbjct: 969 LLEAYGEDNVKIPVRSVLKCEAPTGVCQACYGRAMATGNTAQIGDAVGIIAAQSIGEPGT 1028 Query: 929 QLTMRTFHIGGAASRAAAESSIQV-------KNKGSIKLSNVKSVV 967 QLTMRTFH GG A +V K KG K++ V VV Sbjct: 1029 QLTMRTFHTGGVAGADITHGLPRVVELFEARKPKGLAKIAEVGGVV 1074 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 90/130 (69%), Positives = 112/130 (86%) Query: 17 FDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYK 76 FDAI+I LAS IRSWS GEV KPETINYRT KPE+DGLFC RIFGP KD+EC CGKYK Sbjct: 7 FDAIEIGLASSKQIRSWSSGEVTKPETINYRTLKPEKDGLFCERIFGPTKDWECYCGKYK 66 Query: 77 RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIE 136 R++++G++CE+CGVEVT++KVRRERMGHI+LA+P +HIWF K +PSRIG LLDM +++E Sbjct: 67 RVRYKGIVCERCGVEVTRSKVRRERMGHIDLAAPVSHIWFFKGVPSRIGYLLDMAPKELE 126 Query: 137 RVLYFESYVV 146 +VLYF + +V Sbjct: 127 KVLYFAASIV 136 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 118/233 (50%), Positives = 159/233 (68%), Gaps = 8/233 (3%) Query: 1133 DITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPK 1192 DIT GLPRV +LFEAR+PK A +AE+ G+V +ET +VIT DG D + P+ Sbjct: 1044 DITHGLPRVVELFEARKPKGLAKIAEVGGVVEI-EETDKALTVVITD-DGGDEHRHTFPR 1101 Query: 1193 WRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKH 1252 +L+V G++VE G +++G PH++L +RG Y+V EVQ+VY+ QGV INDKH Sbjct: 1102 RTRLHVERGDKVEPGKQLNEGSLYPHELLAIRGRTETELYLVKEVQEVYKSQGVDINDKH 1161 Query: 1253 IEVIVRQMLRKATIVNAGSSDFLEG---EQVEYSRVKIANRELEANGKVGATYSRDLLGI 1309 IE+IVRQML+K + G +D L G ++ +Y+R+ N+ + NG A +LGI Sbjct: 1162 IELIVRQMLKKVRVDQKGDTDLLPGVFVDRHDYARI---NQVVIDNGGEPAQAEEIILGI 1218 Query: 1310 TKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362 TKASL T+SF+SAASFQETT+VLT+AA+ GK D L GLKENVI+G+LIPA TG Sbjct: 1219 TKASLNTDSFLSAASFQETTKVLTDAALEGKIDRLNGLKENVIIGKLIPAATG 1271 >UniRef50_D1B5Y2 DNA-directed RNA polymerase n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B5Y2_THEAS Length = 1651 Score = 812 bits (2098), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/798 (52%), Positives = 567/798 (71%), Gaps = 30/798 (3%) Query: 144 YVVIEGGMTNLERQQILTE-EQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLR 202 ++VIE G + ER I+TE E+YL + F A +GAE + LLK +DL+ LR Sbjct: 299 HIVIEKGESPFERGDIITESEEYL--CSRYDKSFMAGIGAEGVLELLKRIDLDDLATSLR 356 Query: 203 EELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFAT 262 EE+ E++ + KRK L KR++++E F +S ++PEWMIL+VLPV+PPDLRP+V LDGGRFAT Sbjct: 357 EEIAESSGQKKRK-LVKRLQVVEDFRKSDSRPEWMILSVLPVIPPDLRPMVQLDGGRFAT 415 Query: 263 SDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKR 322 SDLNDLYR+VINRNNRLK+L++L AP+II+RNEKRMLQE+VDAL+DNGRRG+ + G+ R Sbjct: 416 SDLNDLYRKVINRNNRLKKLMELRAPEIIIRNEKRMLQESVDALIDNGRRGKPVPGAGGR 475 Query: 323 PLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIY 382 PLKSL D+++GK+GRFRQNLLGKRVDYSGRSVI +GP L+++QCGLPK+MALELFKPF+ Sbjct: 476 PLKSLTDLLRGKKGRFRQNLLGKRVDYSGRSVIVIGPNLKIYQCGLPKQMALELFKPFVV 535 Query: 383 GKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLI 442 KL RGLA +K A++++ER + VW IL+E+I++HPVLLNRAPTLHRLGIQAFEPVLI Sbjct: 536 HKLVERGLAANVKNARRLIERGKDEVWAILEEIIKDHPVLLNRAPTLHRLGIQAFEPVLI 595 Query: 443 EGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVP 502 EGKAI+LHPLVC A+NADFDGDQMAVHVPL+LEAQ EAR LM+S+NN+LSP++G+PI+ P Sbjct: 596 EGKAIRLHPLVCTAFNADFDGDQMAVHVPLSLEAQAEARILMLSSNNLLSPSSGKPIVTP 655 Query: 503 SQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGE 562 +QD++LG+YY+T + KG+GM ++ G+ ++ARV VR + G Sbjct: 656 TQDIILGVYYLTGMKPDLKGDGMYFRDEEDVLSALDHGVVHVNARVYVR----NRPEWG- 710 Query: 563 LVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFAD 622 + + +T+ GR + +P+ L + +N+ LGKK +L+ Y ++G V D Sbjct: 711 -LGEDKWLETSPGRVVFNCAMPEKLRF--INRQLGKKDFGALLDRAYDLVGQAAMVEMLD 767 Query: 623 QIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKV 682 I G+ ++ +SG S+GI D+++P +K I+ E E+ Q+ G++T E + Sbjct: 768 GIKQLGYKWSTKSGISLGIGDVIVPPQKESIVRETMVHEEELSAQYDMGILTEDEYMRQK 827 Query: 683 IDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAG 742 +W+ A + ++DN+ + N + +M DSGARGS +Q+ Q+AG Sbjct: 828 DALWSEAVKNIVDKIVDNMDVD---------------NPLRIMVDSGARGSKSQVAQMAG 872 Query: 743 MRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVD 802 +RGLMA P G II+ PI +NFR+GLN+L+YFISTHGARKGL+DTA++TA SGYLTRRLVD Sbjct: 873 IRGLMADPSGKIIDYPIVSNFRDGLNMLEYFISTHGARKGLSDTAMRTAKSGYLTRRLVD 932 Query: 803 VAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDV-LKPGTADILVPRN 861 VAQDL++TE+DCGT G+ M P+ + V PL +RV GRV DV L GT LV Sbjct: 933 VAQDLIITEEDCGTDRGVEMRPLKQESKVVIPLSERVAGRVALRDVILSDGTC--LVRAG 990 Query: 862 TLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQ 921 + ++ L+ V++V VRS ++C G+C CYG+DLA H + GEA+GV+AAQ Sbjct: 991 QEIDQETAKALDRAGVESVWVRSPLTCALRHGICRTCYGKDLATRHRVAIGEAVGVVAAQ 1050 Query: 922 SIGEPGTQLTMRTFHIGG 939 SIGEPGTQLTMRTFH GG Sbjct: 1051 SIGEPGTQLTMRTFHTGG 1068 Score = 189 bits (480), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 86/153 (56%), Positives = 115/153 (75%), Gaps = 10/153 (6%) Query: 15 EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74 +E +++ L+SP+ IR+ S GEVKKPETINYRT +PE+DGLFC RIFGP + +EC CGK Sbjct: 4 KEIVGVRVKLSSPERIRAISCGEVKKPETINYRTLRPEKDGLFCERIFGPTRSFECACGK 63 Query: 75 YKRL--KHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPL 132 YKR K +GV+C++CGVEVT +VRRERMGHIELA+P HIW+L+ +PSR+ LL+ Sbjct: 64 YKRSGPKFKGVVCDRCGVEVTDNRVRRERMGHIELAAPVVHIWYLRGIPSRLSLLIGTST 123 Query: 133 RDIERVLYF-------ESY-VVIEGGMTNLERQ 157 +D+ERV+YF +Y VV+EG T+L R+ Sbjct: 124 KDLERVVYFAPNRRREAAYKVVVEGRRTDLVRR 156 Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 121/393 (30%), Positives = 184/393 (46%), Gaps = 79/393 (20%) Query: 1024 TMPVITEVSGFVRFTDMI--DGQTITRQTDEL----------TGLSSLVVLDSAE----- 1066 +P+ V+G V D+I DG + R E+ G+ S+ V Sbjct: 962 VIPLSERVAGRVALRDVILSDGTCLVRAGQEIDQETAKALDRAGVESVWVRSPLTCALRH 1021 Query: 1067 ---RTAGGKDL--RPALKIVDAQG----NDVLIPGTDMPAQYFLPGKAIVQLEDGVQISS 1117 RT GKDL R + I +A G + PGT + + F G GV+ + Sbjct: 1022 GICRTCYGKDLATRHRVAIGEAVGVVAAQSIGEPGTQLTMRTFHTG--------GVRQFT 1073 Query: 1118 GDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVI 1177 G+ DIT GLPR+ LFE R+PK+ A++AE G+V +E +GK++LV+ Sbjct: 1074 GE-------------DITQGLPRIEQLFEVRKPKKAALIAEHDGVVVERREGEGKKKLVV 1120 Query: 1178 -TPVD--GSDPYEEMIPKWRQL--NVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRY 1232 P + G D +P + L V EG + RG V+++G P +L + G+ AV RY Sbjct: 1121 AVPREDGGEDRVVYTLPASQNLLPGVEEGAPIHRGQVLTEGYIDPQQLLEVEGLEAVQRY 1180 Query: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQM--LRKATIVNAGSSDFLEGEQVEYSRVKIANR 1290 I++ +QDVYR QGV INDKHIEVI+R++ + + ++ G S F+ GE V ++ +R Sbjct: 1181 ILDGIQDVYRSQGVSINDKHIEVILRKVAPVNRVRVIEEGDSSFVAGELVWKEDLEAESR 1240 Query: 1291 EL-EANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKE 1349 + E N + L SF+ A ++ L + RDE + + Sbjct: 1241 RISEQNARF---------------LEEASFLCGAVVKDAVGSLDGTGIT--RDEELTMDK 1283 Query: 1350 NVIVGRLIPAGTGYA--YHQDR--MRRRAAGEA 1378 +GRL+ G G + QDR + R GEA Sbjct: 1284 ---LGRLLSPGVGASELICQDREGLLRVIVGEA 1313 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 41/62 (66%), Positives = 50/62 (80%) Query: 1301 TYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAG 1360 T+ L GITKA+LAT+SF+SAASFQ+T +VL AAV G+ D L GLKENVI+G LIP+G Sbjct: 1562 TWKPVLHGITKAALATDSFLSAASFQQTAQVLASAAVRGEVDNLLGLKENVIIGLLIPSG 1621 Query: 1361 TG 1362 TG Sbjct: 1622 TG 1623 >UniRef50_C1TLI9 DNA-directed RNA polymerase n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TLI9_9BACT Length = 1180 Score = 810 bits (2093), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/805 (50%), Positives = 562/805 (69%), Gaps = 29/805 (3%) Query: 144 YVVIEGGMTNLERQQ-ILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLR 202 ++VI G + + IL EQYL + +F A +GAE ++ +L ++D++ +QLR Sbjct: 311 FLVINGSESPFDDGDVILDREQYL--CSHYDKKFRAGIGAEGVREMLDTLDMDHLAQQLR 368 Query: 203 EELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFAT 262 EEL+ET+ + KR+KL KR++++E F + P+ M+L VLPV+PPDLRP+V LDGGRFAT Sbjct: 369 EELSETSGQ-KRRKLVKRLQVVEDFRKGDCNPQSMVLEVLPVIPPDLRPMVQLDGGRFAT 427 Query: 263 SDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKR 322 SDLNDLYRRVINRNNRL++L +L AP+IIVRNEKRMLQE+VDAL+DNGR G+A+ G+ R Sbjct: 428 SDLNDLYRRVINRNNRLRKLQELRAPEIIVRNEKRMLQESVDALIDNGRMGKAVLGAGNR 487 Query: 323 PLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIY 382 PLKSL+D+++GK+GRFRQNLLGKRVDYSGRSVIT+GP L+++QCGLPK+MALELFKPF+ Sbjct: 488 PLKSLSDLLRGKKGRFRQNLLGKRVDYSGRSVITIGPNLKIYQCGLPKQMALELFKPFVI 547 Query: 383 GKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLI 442 KL G+A +K+ K+M+ER + +W IL+E+I++HPV+LNRAPTLHRLGIQAFEPVL+ Sbjct: 548 QKLVDLGIAPNVKSGKRMIERGKEEIWAILEEIIKDHPVMLNRAPTLHRLGIQAFEPVLM 607 Query: 443 EGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVP 502 EGKAI+LHPLVC A+NADFDGDQMAVHVPL++EAQ EAR LM+S NNILSPA+G+PI+ P Sbjct: 608 EGKAIRLHPLVCTAFNADFDGDQMAVHVPLSVEAQAEARMLMLSANNILSPASGKPIVAP 667 Query: 503 SQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEY------E 556 SQD++LG+YY+T GEG + G+ ++AR+++R + Sbjct: 668 SQDIILGIYYLTNLREGMTGEGKYFDSFDDVLTALDHGIVHVNARIRMRWNHEWGNWKDK 727 Query: 557 KDANGELVAKTSLK--DTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGL 614 D G S K +T+ GR + +PK L + ++ LGKK +S++L+ Y + Sbjct: 728 VDQWGVSFLDESGKWFETSPGRVLFNSYLPKKLRF--LDGQLGKKDLSRLLDLGYNEVSR 785 Query: 615 KPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVT 674 + V D I G+ +A SG S + D+VIP++K +++S + E EI+ Q+ G+++ Sbjct: 786 QEMVEMLDSIKGLGYHWATLSGISFCVTDVVIPKEKEDVVSTSLVEDDEIRNQYDMGVLS 845 Query: 675 AGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSA 734 E + +W+ A V A+++++ + N + MM DSGARGS Sbjct: 846 EDEYLLQKETLWSKAAADVGNAILNHMGHD---------------NPVRMMVDSGARGSR 890 Query: 735 AQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSG 794 Q+ Q+AG+RGLMA P G II+ PIT NFREG+N+L+YFISTHGARKGLADTAL+TA SG Sbjct: 891 GQLAQMAGIRGLMADPTGRIIDYPITTNFREGMNMLEYFISTHGARKGLADTALRTAKSG 950 Query: 795 YLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTA 854 YLTRRLVDV+QD+++TEDDCGT +G+ + P+ G P+ +R+ GR + DV P T Sbjct: 951 YLTRRLVDVSQDVIITEDDCGTEKGVKIEPLESDGKTVIPISERIAGRTSLNDVNDPETG 1010 Query: 855 DILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEA 914 D++V ++ ++ + VRS ++C T G+C CYG DLA +++ GEA Sbjct: 1011 DLIVGAGEIITPDLASRIDSCGFKEIWVRSPMTCTTRHGICQKCYGVDLATRSVVDIGEA 1070 Query: 915 IGVIAAQSIGEPGTQLTMRTFHIGG 939 +GV+AAQSIGEPGTQLTMRTFH GG Sbjct: 1071 VGVVAAQSIGEPGTQLTMRTFHTGG 1095 Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 88/160 (55%), Positives = 114/160 (71%), Gaps = 11/160 (6%) Query: 16 EFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKY 75 E +++ LASP IR S GEVKKPETINYRT +PE+DGLFC RIFGP K +EC CGKY Sbjct: 5 EIVGVRVRLASPGEIRGLSTGEVKKPETINYRTLRPEKDGLFCERIFGPTKSFECACGKY 64 Query: 76 KRL--KHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLR 133 K+ K +GVIC++CGVEVT +VRRERMGHIELA+P HIW+L+ +PSR+ LLL + Sbjct: 65 KKSGPKFKGVICDRCGVEVTDNRVRRERMGHIELAAPVVHIWYLRGIPSRLSLLLGTATK 124 Query: 134 DIERVLYFESY--------VVIEGGMTNL-ERQQILTEEQ 164 +E+V+YF VVIEG ++L +R I++E + Sbjct: 125 MLEKVVYFAPIRKREPAFKVVIEGKRSDLAKRGDIVSESE 164 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 81/170 (47%), Gaps = 25/170 (14%) Query: 1025 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAER--TAGGKDL--RPALKI 1080 +P+ ++G D+ D +T D + G ++ D A R + G K++ R + Sbjct: 989 IPISERIAGRTSLNDVNDPET----GDLIVGAGEIITPDLASRIDSCGFKEIWVRSPMTC 1044 Query: 1081 VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISS-------GDTLARIPQESGGTK- 1132 G G D L +++V + + V + + G L +GG + Sbjct: 1045 TTRHGICQKCYGVD------LATRSVVDIGEAVGVVAAQSIGEPGTQLTMRTFHTGGVRI 1098 Query: 1133 ---DITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITP 1179 DIT GLPR+ LFEARRPK+ ++LA + G V +E +GKR+++ITP Sbjct: 1099 TGEDITQGLPRIEQLFEARRPKKVSVLAGVDGKVIEIREMEGKRKVIITP 1148 >UniRef50_D1Y777 DNA-directed RNA polymerase n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y777_9BACT Length = 1710 Score = 803 bits (2075), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/843 (48%), Positives = 569/843 (67%), Gaps = 36/843 (4%) Query: 106 ELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTE-EQ 164 ++ S + H F + P R L+ V+ Y+VI+ G + I+ E EQ Sbjct: 298 QILSQSEHTLFQEKYPHRFTSQLE------SVVVEDPCYLVIDEGESPFSESDIIIEREQ 351 Query: 165 YLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLL 224 YL + +F A +GAE ++ L +M+L ++LREEL+ET + KR+K+ KR++++ Sbjct: 352 YL--CSAYDPKFKAGIGAEGVREKLCAMNLNHLVQELREELSETTGQ-KRRKIVKRLQVV 408 Query: 225 EAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLD 284 E F + P+ M+L VLPV+PPDLRP+V LDGGRFATSDLNDLYRRVINRNNRL +L + Sbjct: 409 EDFRKGDCAPQSMVLEVLPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLSKLKE 468 Query: 285 LAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLG 344 L AP+II+RNEKRMLQE+VDAL+DNGR G+A+ G+ RPLKSL D+++GK+GRFRQNLLG Sbjct: 469 LKAPEIIIRNEKRMLQESVDALIDNGRMGKAVLGAGNRPLKSLTDLLRGKKGRFRQNLLG 528 Query: 345 KRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVERE 404 KRVDYSGRSVI +GP+LRL+QCGLPK+MALELFKPF+ K+ +G+AT +K K+M+ER Sbjct: 529 KRVDYSGRSVIAIGPFLRLYQCGLPKQMALELFKPFVIQKMVEKGIATNVKNGKRMIERG 588 Query: 405 EAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGD 464 +W IL+E+I++HPV+LNRAPTLHRLGIQAFEP+L+EGKAI+LHP+ C A+NADFDGD Sbjct: 589 NEEIWGILEEIIKDHPVMLNRAPTLHRLGIQAFEPILMEGKAIRLHPMACTAFNADFDGD 648 Query: 465 QMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEG 524 QMAVHVPL++EAQ EAR LM++ NN+LSPA+G+PI+ P+QD++LG+YY+T KGE Sbjct: 649 QMAVHVPLSIEAQTEARMLMLAANNLLSPASGKPIVSPTQDILLGVYYITNMVSGLKGEN 708 Query: 525 MVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKD--------TTVGR 576 + G ++ R+ +R K + + + D T+ GR Sbjct: 709 TYYDSLDDVMTALDHGAVHVNTRIYLRWDPEWKPLTKKGMEDSDFLDPKTRKWLITSPGR 768 Query: 577 AILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSG 636 A+ + + L + VN +GKK +S ML+ Y L V D I G+ +A SG Sbjct: 769 ALFNLHLNPRLRF--VNFQMGKKDLSAMLDKAYDYLSHIEMVDTLDSIKNLGYHWACLSG 826 Query: 637 ASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKA 696 S + +VIP +K ++++E+ I++Q++ G++T E + ++W+ A ++ + Sbjct: 827 LSFQMQAIVIPPEKQQLVNESLDVDGRIRDQYEMGILTEDEYLRQKEELWSGAAGKIGDS 886 Query: 697 MMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIE 756 +MD++ N I MM +SGARGS Q+ Q+AG+RGLMA P G II+ Sbjct: 887 IMDHMAVT---------------NPIRMMVESGARGSRGQLAQMAGIRGLMADPTGRIID 931 Query: 757 TPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGT 816 PIT NFREG+N+L+YFISTHGARKGLADTAL+TA SGYLTRRLVDVAQD++V E+DC T Sbjct: 932 YPITTNFREGMNMLEYFISTHGARKGLADTALRTAKSGYLTRRLVDVAQDIIVLEEDCHT 991 Query: 817 HEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENS 876 +GI + P+ G V PL +R+ GR + ED+ P + + +V +N L+ + EN Sbjct: 992 SKGIKIEPMKSDGKVVIPLSERIAGRTSLEDIDHPVSGERIVSKNELISPDKAVEI-ENI 1050 Query: 877 VDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFH 936 + + VRS +SC++ +G+C CYG DL+ ++N GEA+GV+AAQSIGEPGTQLTMRTFH Sbjct: 1051 REHIWVRSPLSCESPYGICRKCYGVDLSSRKMVNIGEAVGVVAAQSIGEPGTQLTMRTFH 1110 Query: 937 IGG 939 GG Sbjct: 1111 TGG 1113 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 95/191 (49%), Positives = 123/191 (64%), Gaps = 14/191 (7%) Query: 14 TEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCG 73 +E I++ LA+PD IR S GEVKKPETINYRT +PERDGLFC RIFGP K YEC CG Sbjct: 2 NKEIVGIRLRLATPDQIRELSHGEVKKPETINYRTLRPERDGLFCERIFGPTKSYECACG 61 Query: 74 KYKRL--KHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMP 131 KYK+ K +GV+C++CGVEVT +VRRERMGHIELA+P HIW+L+ +PSR+ LLL P Sbjct: 62 KYKKSGPKFKGVVCDRCGVEVTDNRVRRERMGHIELAAPVVHIWYLRGIPSRLSLLLGTP 121 Query: 132 LRDIERVLYFESY--------VVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAE 183 + +ERV+YF +VIEG +L + + E + +D K AE Sbjct: 122 TKMLERVVYFAPLRKREAAYKIVIEGKRPDLAAKDDVISESEM----RVHAHYDPKFKAE 177 Query: 184 AIQALLKSMDL 194 +L + D+ Sbjct: 178 EAYRILSTDDV 188 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 78/214 (36%), Positives = 123/214 (57%), Gaps = 30/214 (14%) Query: 1091 PGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRP 1150 PGT + + F G GV+IS +DIT GLPR+ LFEARRP Sbjct: 1100 PGTQLTMRTFHTG--------GVRISG--------------EDITQGLPRIEQLFEARRP 1137 Query: 1151 KEPAILAEISGIVSFGKETKGKRRLVI--TPVDGSDPYEEM---IPKWRQLNVFEGERVE 1205 K+ + LA ++G V+ +E +GKR+++I TP D SD +++ IP + + V EG+ V+ Sbjct: 1138 KKVSYLAGLNGKVAEVRELEGKRKVIIEGTPND-SDVVQKVTYSIPASQSILVEEGDEVK 1196 Query: 1206 RGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM--LRK 1263 +I+DG P +L + G AV +Y+V+ +Q+VYR QGV IN+KHIEVI+R++ + + Sbjct: 1197 SDTLITDGYIDPQQLLEVEGQEAVQKYLVDSIQEVYRSQGVSINNKHIEVILRKVAPINR 1256 Query: 1264 ATIVNAGSSDFLEGEQVEYSRVKIANRELEANGK 1297 +++ G + + G+ V S V+ EL A + Sbjct: 1257 LRVIDEGDTSLVAGDLVWASDVQKEIDELTAENE 1290 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 40/60 (66%), Positives = 47/60 (78%) Query: 1308 GITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQ 1367 GITKA+LATESF+SAASFQ+T ++L AAV + D L GLKENVI+G LIPAGTG Q Sbjct: 1616 GITKAALATESFLSAASFQQTAQILAGAAVRSQVDHLMGLKENVIIGHLIPAGTGIERFQ 1675 >UniRef50_A9B6J1 DNA-directed RNA polymerase subunit beta' n=3 Tax=Bacteria RepID=RPOC_HERA2 Length = 1543 Score = 796 bits (2056), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/852 (49%), Positives = 562/852 (65%), Gaps = 79/852 (9%) Query: 151 MTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNS 210 + +++ +I++E +Y + F A MGA A++ ++ +DL++ Q++ E+ +++S Sbjct: 319 LDDIQLHRIISENEYRILRDLAPYTFKADMGAGAVRDIVSMVDLDELSNQMQAEV-QSSS 377 Query: 211 ETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYR 270 +RKK TKR++++EAF +SGN+PEWMI+TVLPV+PPDLRP+V LDGGRFATSDLNDLYR Sbjct: 378 GQRRKKATKRLRVVEAFRKSGNRPEWMIMTVLPVIPPDLRPMVQLDGGRFATSDLNDLYR 437 Query: 271 RVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADM 330 RVINRNNRLKRL++L AP+IIVRNEKRMLQEAVDAL+DNGRRGR ++G K LKSL+DM Sbjct: 438 RVINRNNRLKRLMELNAPEIIVRNEKRMLQEAVDALIDNGRRGRPVSGKGKHRLKSLSDM 497 Query: 331 IKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGL 390 +KGKQGRFRQNLLGKRVDYSGRSVI VGP L+LHQCGLPKKMALELFKPF+ +L +G Sbjct: 498 LKGKQGRFRQNLLGKRVDYSGRSVIVVGPTLQLHQCGLPKKMALELFKPFVMRRLVDKGF 557 Query: 391 ATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLH 450 A IK+AK+ VER VWD+L+EVI+++ VLLNRAP+LHRL IQAFE LIEG AIQLH Sbjct: 558 AHNIKSAKRFVERVRPEVWDVLEEVIKDYLVLLNRAPSLHRLSIQAFEAKLIEGSAIQLH 617 Query: 451 PLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGL 510 PLVCAA+NADFDGDQMAVHVPL+ +AQ EAR M+ST N+LSPA G+PII PSQD+VLG Sbjct: 618 PLVCAAFNADFDGDQMAVHVPLSRKAQEEARRRMISTYNLLSPATGDPIITPSQDIVLGC 677 Query: 511 YYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEY--------EKDANG- 561 +Y+T+ AKG G EA Y +G+ + A V + I +Y EK+ Sbjct: 678 FYLTQVRPGAKGGGKRFGSIDEALLAYTNGVVHIQAPVWIVIEDYILPGSDLREKELPSL 737 Query: 562 ELVAKTSLKDTTVGRAIL-----WMIVPKG------LPYSIVNQALGKKAISKMLNTCYR 610 + V L +T+VGR I + PK P N +GK + ++ CYR Sbjct: 738 DGVTPRVLIETSVGRIIFNNALRYQGEPKAGENGYRSPLHYRNFLVGKSGLKALIADCYR 797 Query: 611 ILGLKPTVI-------------------------------FADQIMYTGFAYAARSGASV 639 + +I AD+I GF +A G + Sbjct: 798 FHSQRENIIADVYQELIERFGPETSEESLLRFYASERTARLADRIKALGFKHATLGGMTF 857 Query: 640 GIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMD 699 D+ +P+ K I+ E +V +I++ + GL+T ERY +V+ W A +++ + Sbjct: 858 SASDVEVPDTKDAIVQETYKKVQDIEKMQRRGLITDDERYREVVTAWLDATNQIKVEVQR 917 Query: 700 NLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPI 759 +L F + MM+ SGARG+ QIRQ+AGMRGL P G IIE PI Sbjct: 918 SLN---------------PFGPVSMMSTSGARGNVEQIRQMAGMRGLTTDPTGRIIELPI 962 Query: 760 TANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEG 819 TANFREGL+V++YFISTHG RKGLADTAL+TA++GYLTRRLVDVAQD++VT +DCGT EG Sbjct: 963 TANFREGLSVIEYFISTHGGRKGLADTALRTADAGYLTRRLVDVAQDVIVTIEDCGTTEG 1022 Query: 820 IMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHE----QWCDLLEEN 875 + + D+ + DR++GRVT V P T +++ ++ + E ++L+ Sbjct: 1023 MWIRV---SRDILASVEDRIVGRVTVAPVTNPVTGEVIFDTDSEILEDDGKHIANVLKSL 1079 Query: 876 SVDA-----VKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQL 930 +A + VRSV++C+ D+G+C CYGR+LA G ++ GEA+G+IAAQSIGEPGTQL Sbjct: 1080 DKEAQAEFGIYVRSVLTCNADYGICRKCYGRNLATGKMVEIGEAVGIIAAQSIGEPGTQL 1139 Query: 931 TMRTFHIGGAAS 942 T+RTFH GG A+ Sbjct: 1140 TLRTFHTGGVAT 1151 Score = 223 bits (567), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 90/133 (67%), Positives = 118/133 (88%) Query: 16 EFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKY 75 EF+AI+I+LASP+ I SWS GEV KPETINYRT +PERDGLFC +IFGP +D+EC CGKY Sbjct: 6 EFNAIRISLASPEDILSWSHGEVTKPETINYRTLRPERDGLFCEKIFGPTRDWECYCGKY 65 Query: 76 KRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDI 135 KR++++G++C+KCGVEVT++KVRR+RMGHI+LASP +HIWF+K PSR+GLLLD+ R++ Sbjct: 66 KRVRYKGIVCDKCGVEVTRSKVRRDRMGHIKLASPVSHIWFVKGTPSRLGLLLDISPRNL 125 Query: 136 ERVLYFESYVVIE 148 ERVLYF SY++ + Sbjct: 126 ERVLYFASYIITD 138 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 109/205 (53%), Positives = 136/205 (66%), Gaps = 6/205 (2%) Query: 1174 RLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYI 1233 RLVI D + +EE+I +L V +G+ V+ G +++G P ++L+LRG AV Y+ Sbjct: 1257 RLVIQAKD-IEEHEEVIAHAARLRVKDGDLVQVGQQMTEGSSDPQEMLQLRGREAVQEYL 1315 Query: 1234 VNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELE 1293 NE Q VYR QGV INDKHIEVIVRQMLR+ I G ++ L GE VE + N + Sbjct: 1316 TNEAQKVYRSQGVGINDKHIEVIVRQMLRRVRIEEPGDTELLPGELVELHELNRINASIV 1375 Query: 1294 ANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIV 1353 + G A LLGITKASL+T+SF+SAASFQETTRVLTEAAV GK D LRGLKENV++ Sbjct: 1376 SQGGDPALAVPVLLGITKASLSTDSFLSAASFQETTRVLTEAAVNGKIDYLRGLKENVVI 1435 Query: 1354 GRLIPAGTGYAYHQDRMRRRAAGEA 1378 G+LIPAGTG RR+ A EA Sbjct: 1436 GKLIPAGTGM-----EQRRKLAEEA 1455 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/82 (43%), Positives = 54/82 (65%), Gaps = 5/82 (6%) Query: 1133 DITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPY--EEMI 1190 DIT GLPRV ++FEAR PK A+LA+I+G V +E +G RRL I + Y E+M+ Sbjct: 1154 DITQGLPRVQEIFEARIPKGKAVLAQIAGRVQIVREEEGIRRLRIV---SEEVYTDEQML 1210 Query: 1191 PKWRQLNVFEGERVERGDVISD 1212 PK ++ V G+ VE G+++++ Sbjct: 1211 PKDYRVVVKNGDAVEIGNLLAE 1232 >UniRef50_C9M941 DNA-directed RNA polymerase n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M941_9BACT Length = 1684 Score = 789 bits (2038), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/851 (47%), Positives = 570/851 (66%), Gaps = 53/851 (6%) Query: 106 ELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFES-YVVIEGGMTNL-ERQQILTEE 163 ++ S T H F P R E V+ ++ Y+VI G + E + I+ E Sbjct: 278 DVVSATEHDLFCGKYPGRF-------TSQKESVVVEDACYLVISSGDSPFAEGEVIVGCE 330 Query: 164 QYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKL 223 Q + + +F A GAE ++ +LK +D + ++LREEL+E + KR+K+ KR+++ Sbjct: 331 QRI--CSRYDKKFKANYGAEGVREILKGIDTDHLAQELREELSEAKGQ-KRRKIVKRLQV 387 Query: 224 LEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLL 283 +E F + G +PE M+L VLPV+PPDLRP+V LDGGRFATSDLNDLYRRVINRNNRL RL Sbjct: 388 VEEFRRGGCRPESMVLDVLPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLLRLK 447 Query: 284 DLAAPDIIVRNEKRMLQEAVDALLDNGRR---GRAITGSNKRPLKSLADMIKGKQGRFRQ 340 D AP ++ NEKRMLQEAVD+L+DN R+ G+ + G+ RPLKSL D+++GK+GRFRQ Sbjct: 448 DTRAPQLMQHNEKRMLQEAVDSLIDNNRQSKNGKVVLGAGNRPLKSLTDLLRGKKGRFRQ 507 Query: 341 NLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKM 400 NLLGKRVDYSGRSVI +GP+L+LHQCGLPK+MALELFKPF+ KL RG+AT +K KK+ Sbjct: 508 NLLGKRVDYSGRSVIAIGPFLKLHQCGLPKRMALELFKPFVVQKLVERGIATNVKNGKKL 567 Query: 401 VER-EEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNA 459 +ER + +WDIL+E+I++HPVLLNRAPTLHRLGIQAFEP+L+EG+AI+LHP+ CAA+NA Sbjct: 568 IERAKNDAIWDILEEIIKDHPVLLNRAPTLHRLGIQAFEPILMEGQAIRLHPMACAAFNA 627 Query: 460 DFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVN 519 DFDGDQMAVHVPL++EAQ EAR LM+S+NN+LSPA+G+PI+ P+QD++LGLY++T Sbjct: 628 DFDGDQMAVHVPLSIEAQTEARMLMLSSNNLLSPASGKPIVSPTQDILLGLYHITNMIEG 687 Query: 520 AKGEGMVLTGPKEAERLYRSGLASLHARVKVRITE-----------YEKDANGELVAKTS 568 G+ + +++R+ +R E + D L+ Sbjct: 688 KPGQDHYFRDMDSVMAALDHEIVHVNSRIYLRWDESWHLLLSGGDKFLDDGRKWLI---- 743 Query: 569 LKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTG 628 TT GR + ++PK L + VN +GKK +S++L+ + ++G V D I G Sbjct: 744 ---TTPGRILFNQLLPKALRF--VNIQMGKKDLSRLLDIAFDLVGHNDLVNMLDSIKNLG 798 Query: 629 FAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAA 688 + +A SG S + +VIP++K +++ E++ +EI+E++ G++T E ++ +W+ Sbjct: 799 YHWAGVSGISFQMQAIVIPKEKAKVVDESQKVDSEIREEYDMGILTEDEYLDQKEKLWSG 858 Query: 689 ANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMA 748 A ++ A+++ + N I MM DSGARGS AQ+ Q+AG+RG+MA Sbjct: 859 AAKKIGDAILEQMDRN---------------NPIRMMIDSGARGSRAQLAQMAGIRGVMA 903 Query: 749 KPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLV 808 P G II+ PIT NFREG+N+L+YFISTHGARKGLADTAL+TA SGYLTRRLVDVAQD++ Sbjct: 904 DPTGRIIDYPITTNFREGMNMLEYFISTHGARKGLADTALRTAKSGYLTRRLVDVAQDII 963 Query: 809 VTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQW 868 V E+DC T++G+ + P+I+ G + PL DRV GR + EDV +V +N L+ Sbjct: 964 VLEEDCHTNKGVKIEPLIKDGKIVIPLSDRVTGRTSLEDVDDENGR--VVTKNELITRAQ 1021 Query: 869 CDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGT 928 L++ D + VRS ++C++ G+C CYG DL+ + GEA+G++AAQSIGEPGT Sbjct: 1022 AKRLDDMGRDHLWVRSPMTCESPNGICRKCYGVDLSARRTVGIGEAVGIVAAQSIGEPGT 1081 Query: 929 QLTMRTFHIGG 939 QLTMRTFH GG Sbjct: 1082 QLTMRTFHTGG 1092 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 97/192 (50%), Positives = 121/192 (63%), Gaps = 14/192 (7%) Query: 16 EFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKY 75 E +++ L D IR S+GEVKKPETINYRT KPERDGLFC RIFGP K YEC CGKY Sbjct: 5 EIVGVRVKLGDADEIRKLSYGEVKKPETINYRTLKPERDGLFCERIFGPTKSYECACGKY 64 Query: 76 KRL--KHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLR 133 K+ K +GV+C+ CGVEVT VRRERMGHIELA+P H+W+L+ PSR+ LLL P + Sbjct: 65 KKSGPKFQGVVCDHCGVEVTDKSVRRERMGHIELAAPVVHLWYLRGTPSRLSLLLGTPTK 124 Query: 134 DIERVLYF-------ESY-VVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAI 185 D+E+V+YF E+Y VVIEG + + + E L +D K AE Sbjct: 125 DLEKVIYFAANRRREEAYLVVIEGKYPEVAPKGRVISESERRCL----SHYDRKFRAEVA 180 Query: 186 QALLKSMDLEQE 197 LL D++ E Sbjct: 181 YRLLTVDDIDLE 192 Score = 112 bits (281), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 69/186 (37%), Positives = 112/186 (60%), Gaps = 15/186 (8%) Query: 1128 SGGTK---DITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSD 1184 +GG + DIT GLPR+ LFEARRPK+ A+LA ++G+V +E GKR+++I +G+ Sbjct: 1090 TGGVRTGEDITQGLPRIEQLFEARRPKKVAVLAGLNGVVLEIRELGGKRKVII---EGTA 1146 Query: 1185 PYEEMI-------PKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEV 1237 P +++ P + L V EG+ V ++DG P +L + G+ AV +Y+V+ + Sbjct: 1147 PGSDVVRRETYTVPGAQALRVTEGQTVTAQTELTDGYIDPQQLLEVMGLEAVQKYLVDSI 1206 Query: 1238 QDVYRLQGVKINDKHIEVIVRQM--LRKATIVNAGSSDFLEGEQVEYSRVKIANRELEAN 1295 Q+VY QGV IN+KHIEVI+R++ + + I + G + F+ GE S V+ E++A+ Sbjct: 1207 QEVYESQGVSINNKHIEVILRKVAPINRVKITDEGDTSFVAGEFAWTSDVEKEIEEIKAS 1266 Query: 1296 GKVGAT 1301 + T Sbjct: 1267 NEKNLT 1272 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 48/100 (48%), Positives = 63/100 (63%), Gaps = 1/100 (1%) Query: 1297 KVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRL 1356 ++G + + G+TKA+LAT+SF+SAASFQ+T ++L AAV + D L GLKENVI+G L Sbjct: 1581 RLGPQWRPFIHGVTKAALATDSFLSAASFQQTAQILAGAAVRNQVDHLMGLKENVIIGHL 1640 Query: 1357 IPAGTGYAYHQD-RMRRRAAGEAPAAPQVTAEDASASLAE 1395 IPAGTG Q + RR + P A TA A S E Sbjct: 1641 IPAGTGIERFQSVSVERRKGSDEPVAVGETACAAEDSCGE 1680 >UniRef50_B3DTE1 DNA-directed RNA polymerase subunit beta' n=50 Tax=Actinobacteridae RepID=RPOC_BIFLD Length = 1345 Score = 775 bits (2001), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/885 (47%), Positives = 570/885 (64%), Gaps = 58/885 (6%) Query: 170 EEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQ 229 + +GD FD MGAEAI+ L+S+DLE ++LREE+ + SE ++ K KR+K++ AF+ Sbjct: 247 DRYGDYFDGCMGAEAIKKRLQSLDLETISKELREEIKDA-SEQRKTKALKRLKVVNAFLT 305 Query: 230 SGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPD 289 +GNKPE M+L V+PV+PPDLRP+V LDGGRFATSDLNDLYRRVINRNNRLKRL++L AP+ Sbjct: 306 TGNKPEAMVLDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIELGAPE 365 Query: 290 IIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDY 349 I++ NEKRMLQEAVD+L DNGRRGR +TG++ RPLKSL+DM+KGKQGRFRQNLLGKRVDY Sbjct: 366 IMLNNEKRMLQEAVDSLFDNGRRGRPVTGASNRPLKSLSDMLKGKQGRFRQNLLGKRVDY 425 Query: 350 SGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVW 409 SGRSVI VGP LR+HQCGLPK MALELFKPF+ +L A +K+AK++V+R +A VW Sbjct: 426 SGRSVIVVGPSLRMHQCGLPKPMALELFKPFVIKRLVDLNYAQNMKSAKRLVDRGDAEVW 485 Query: 410 DILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVH 469 +L+EVI EHPVLLNRAPTLHRLGIQAFEP+L+EGKAI L PL CAA+NADFDGDQMAVH Sbjct: 486 GVLEEVISEHPVLLNRAPTLHRLGIQAFEPILVEGKAIHLPPLACAAFNADFDGDQMAVH 545 Query: 470 VPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTG 529 +PL+ EAQ EAR+LMM+++NIL PA+G + +PSQD++LGLYY++ KG+G V + Sbjct: 546 LPLSAEAQAEARSLMMASDNILKPADGHTVTMPSQDMILGLYYLSTVLEGVKGQGRVFSS 605 Query: 530 PKEAERLYRSGLASLHARVKVRITE-------YE---------KDANGELVAKTSLKDTT 573 +EAE + A+V +R+ E +E ++ E+V + D T Sbjct: 606 LEEAEMALDRHEIDMQAKVLIRLPESFVLPKNWEPGEVKVLDPREGEDEVVKEERFHDGT 665 Query: 574 V------GRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYT 627 V GR + +P P+ VN+ + K +SK+++ + D + Sbjct: 666 VLFATSYGRILFNETLPTDYPF--VNEQVAKGRLSKIVDDIAMRYSTQQVAATLDALKDL 723 Query: 628 GFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWA 687 GF A SG S D+ P ++ E I+E EA+ ++ ++ GL+T R ++ID+W Sbjct: 724 GFTRAPWSGVSFAFSDVNEPPERDEKIAEYEAKADKVNANYEMGLLTEEARRQELIDLWT 783 Query: 688 AANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM 747 VSK + EEK +++ ++ SGARG+ QI Q+AGMRGL+ Sbjct: 784 ECTAEVSKEV---------------EEKFDPTSNLAIIVQSGARGNMMQINQIAGMRGLV 828 Query: 748 AKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDL 807 A P G II P+ +N+R+GL+VL+YFIS HGARKGLADTAL+TA SGYLTRRLVDV+QD+ Sbjct: 829 ANPKGEIIPRPVKSNYRDGLSVLEYFISQHGARKGLADTALRTAESGYLTRRLVDVSQDV 888 Query: 808 VVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLG----RVTAEDVLKPGTAD-ILVPRNT 862 +V E+DCGT G+ + D L G R+ A DV+ P +L R+ Sbjct: 889 IVREEDCGTKAGLPIRVAERDNDGNLVLVKAADGGPYSRLLAADVIDPADGQTVLYKRDD 948 Query: 863 LLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQS 922 L + L + V+ VK RSV++C++ GVCA CYG LA +++ GE +G++AAQS Sbjct: 949 ALSMDVLNDLVAHGVEEVKCRSVLTCESKRGVCAKCYGWSLATNKLVDVGETVGIVAAQS 1008 Query: 923 IGEPGTQLTMRTFHIGGAASRAAAESSI--------QVKNKGSIKLS----NVKSVVNSS 970 IGEPGTQLT+R+FH GG A+ + + KG ++ ++K V N Sbjct: 1009 IGEPGTQLTLRSFHSGGVAAASDITQGLPRVTELFEARTPKGEAPITEFAGSIKIVENDR 1068 Query: 971 GKLVITSRNTELKLIDEFGRTKE-SYKVPYGAVLAKGDGEQVAGG 1014 G+ +I + + + E G K +Y+V L DG+ + G Sbjct: 1069 GRQIILTPDADSGAPKEDGVIKPITYQVSKRVPLKVADGDHIKVG 1113 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 93/164 (56%), Positives = 124/164 (75%), Gaps = 11/164 (6%) Query: 17 FDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYK 76 FD I+I LA+ D IR WS GEVKKPETINYRT KPE+DGLF +IFGP +D+EC CGKYK Sbjct: 7 FDKIRIGLATADDIRGWSHGEVKKPETINYRTLKPEKDGLFGEQIFGPTRDWECACGKYK 66 Query: 77 RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIE 136 R++ +G++CE+CGVEVT+++VRRERMGHIELA+P HIWF K +PSR+G LL++ +D+E Sbjct: 67 RVRFKGIVCERCGVEVTRSRVRRERMGHIELAAPVTHIWFFKGVPSRLGYLLNVTPKDLE 126 Query: 137 RVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKM 180 RV+YF SY+V E + E++ + L DEFD+++ Sbjct: 127 RVIYFASYMVTE-----------VNEDERHNDLPGLQDEFDSEI 159 Score = 205 bits (522), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 121/253 (47%), Positives = 163/253 (64%), Gaps = 13/253 (5%) Query: 1128 SGGT---KDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITP-VDGS 1183 SGG DIT GLPRV +LFEAR PK A + E +G + + +G R++++TP D Sbjct: 1023 SGGVAAASDITQGLPRVTELFEARTPKGEAPITEFAGSIKIVENDRG-RQIILTPDADSG 1081 Query: 1184 DPYEE--------MIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVN 1235 P E+ + K L V +G+ ++ G + +G P IL + G A IV Sbjct: 1082 APKEDGVIKPITYQVSKRVPLKVADGDHIKVGTQLVEGSVDPKKILTILGKRAAQVNIVE 1141 Query: 1236 EVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEAN 1295 EV VYR QGV I+DKHIEVIV QM R+ TI+++G +D L GE V+ +R + NR + N Sbjct: 1142 EVHTVYRSQGVDIHDKHIEVIVHQMTRRVTIIDSGDTDLLPGELVDNARFREINRNIVKN 1201 Query: 1296 GKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGR 1355 G A L+GITKASLAT+S++SAASFQETTRVLTEAA++ K D+L+GLKENVI+G+ Sbjct: 1202 GGRPAVGRPALMGITKASLATDSWLSAASFQETTRVLTEAALSEKVDDLKGLKENVIIGK 1261 Query: 1356 LIPAGTGYAYHQD 1368 LIPAGTG A +++ Sbjct: 1262 LIPAGTGLARYRN 1274 >UniRef50_A4E9H2 DNA-directed RNA polymerase n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9H2_9ACTN Length = 1373 Score = 766 bits (1977), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/817 (50%), Positives = 543/817 (66%), Gaps = 57/817 (6%) Query: 155 ERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREEL-NETNSETK 213 ER I E + + + F MGAEA++ LL ++DL E E+L+ + +E + + K Sbjct: 110 ERDLISDEPLFREMTRYYSMYFKGGMGAEAVRDLLAAIDLPSEAEKLKAIIADEDSQKQK 169 Query: 214 RKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVI 273 R+K KR+++++AF++ GN P MIL V+PV+PPDLRP+V LDGGRFA SDLNDLYRRVI Sbjct: 170 REKAVKRLEVVDAFLKGGNSPANMILDVIPVIPPDLRPMVQLDGGRFAASDLNDLYRRVI 229 Query: 274 NRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKG 333 NRNNRLKRLLDL AP IIV NEKRMLQE+VDAL DNGRRGR ++G RPLKSLA+ +KG Sbjct: 230 NRNNRLKRLLDLDAPAIIVNNEKRMLQESVDALFDNGRRGRPVSGRGGRPLKSLAEALKG 289 Query: 334 KQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATT 393 KQGRFRQNLLGKRVDYSGRSVI P L LHQCGLPK MALELFKPF+ +L G Sbjct: 290 KQGRFRQNLLGKRVDYSGRSVIVTDPKLLLHQCGLPKTMALELFKPFVMKRLVELGKVEN 349 Query: 394 IKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLV 453 IK AK+ ++R VWDIL+EVI VLLNRAPTLHRL IQAFEPVL+EGKAI LHPLV Sbjct: 350 IKGAKRAIDRGATFVWDILEEVIDGRVVLLNRAPTLHRLSIQAFEPVLVEGKAIHLHPLV 409 Query: 454 CAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYM 513 C+ +NADFDGDQM+VHVPL+ +AQ EAR LM+S NN+ SPA+G+P+ +PSQD+++G+YY+ Sbjct: 410 CSPFNADFDGDQMSVHVPLSSQAQAEARVLMLSANNLRSPASGKPVNIPSQDMIIGVYYL 469 Query: 514 TRDCVNAKGEGMVLTGPKEAERLY--RSGLASLHARVKVRITEYE--------------K 557 T+ GE V +A Y RS + + A+++VR++ + K Sbjct: 470 TQVRDGLPGENHVFASFDDALHAYDCRSEV-DMQAKIQVRVSAADANVINEDGTRIFRVK 528 Query: 558 DANGELV------AKTSLKDTTVGRAIL-WMIVPKGLPYSIVNQALGKKAISKML-NTCY 609 + E V KT+ +T++GR I +P+ Y +N + K ++K++ + C Sbjct: 529 NGKNEFVDYDVTGNKTARFETSIGRIIFNRQCLPED--YEFMNYKMVKGDVAKLVADCCD 586 Query: 610 RILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQ 669 R K I D I Y+GF YA R+G ++ + D +IP +K E++ A+A V +I E F+ Sbjct: 587 RYPEAKVGPIL-DAIKYSGFHYATRAGLTISVWDALIPAEKQELLDRAQANVDQINEYFE 645 Query: 670 SGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSG 729 G + ER+ +V++ W A D+V+ M+D E N +YMMADSG Sbjct: 646 EGFINETERHIEVVNEWTACTDKVAALMLDMFDEE---------------NPLYMMADSG 690 Query: 730 ARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALK 789 ARGS Q+RQL GMRGLMA G I+ PI ANFREGL L+YFIST+GARKGL DTA Sbjct: 691 ARGSKTQLRQLGGMRGLMADMSGETIDLPIKANFREGLLPLEYFISTYGARKGLVDTASH 750 Query: 790 TANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVL 849 T++SGYLTRRLVDVAQD++V E+DCGTHEG+ +I G L ++GR EDV+ Sbjct: 751 TSDSGYLTRRLVDVAQDVIVREEDCGTHEGVTYNLIIPG---TTDLNTDLVGRCFIEDVV 807 Query: 850 KP-GTADILVPRNTLLHEQWCDLLEENSVDA----VKVRSVVSCDTDFGVCAHCYGRDLA 904 P GT +L ++ + E+ D+ + VDA VK+R++++C + +GVC CYG DL+ Sbjct: 808 APDGT--VLFEQDGYI-EKVADI--QKMVDAGLKKVKLRALLTCRSKYGVCQKCYGWDLS 862 Query: 905 RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAA 941 + G A+G+IAAQSIGEPGTQLTMRT H GG A Sbjct: 863 TRRPVAIGTAVGIIAAQSIGEPGTQLTMRTIHSGGVA 899 Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 100/279 (35%), Positives = 141/279 (50%), Gaps = 27/279 (9%) Query: 1129 GGTKDITGGLPRVADLFE------ARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDG 1182 G DIT GLP V+ +F+ + A LA SG +S E K V+T D Sbjct: 899 AGVDDITQGLPTVSRMFDIVGNVNEKILGREAELAPYSGHLSIKPE---KSEYVLTLTDS 955 Query: 1183 SDPY----EEMIPKWRQL--NVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNE 1236 D E +P + + +G V GD I+ G ++ +L + + V Sbjct: 956 EDHTRVLDERRVPASVRFMPEIEDGCEVRAGDQITKGFVNFRNLRKLTDIESTMHTFVES 1015 Query: 1237 VQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANG 1296 V+DVY QGV +NDKHIEV+ RQMLR+ I N G S +L G+ V+ R + A+ E+E Sbjct: 1016 VKDVYTSQGVDLNDKHIEVLARQMLRRVQITNPGDSKYLLGQYVD--RYEFAD-EVERVA 1072 Query: 1297 KVGA---TYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIV 1353 ++G +LG K + +S++S+ASF T VLTEAA+ GK D L LK NVIV Sbjct: 1073 RLGGQAPVAEPVILGTLKVASNIDSWLSSASFIRTAGVLTEAAIEGKVDHLLDLKSNVIV 1132 Query: 1354 GRLIPAGTGY-AYHQDRMRRRAAG-----EAPAAPQVTA 1386 G+ IPAGTG Y ++ R A + PA+P + Sbjct: 1133 GKKIPAGTGLKPYANAKLTYRTADGYVDIDGPASPNAKS 1171 >UniRef50_C4LL70 DNA-directed RNA polymerase subunit beta' n=65 Tax=Actinobacteridae RepID=RPOC_CORK4 Length = 1332 Score = 759 bits (1959), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/816 (49%), Positives = 541/816 (66%), Gaps = 57/816 (6%) Query: 156 RQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRK 215 +Q I+ E Y + ++ + D F MGAEAIQ L+K+ DLE E E+L E + + + + + Sbjct: 232 KQMIVDETIYSELVDRYEDYFTGGMGAEAIQTLIKNFDLEAEAEKLSEVIRDGKGQKQVR 291 Query: 216 KLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINR 275 L KR++++ AF++SGN P M+L +PV+PP+LRP+V LDGGRFATSDLNDLYRRVINR Sbjct: 292 AL-KRLRVVAAFLRSGNDPAAMVLDAIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINR 350 Query: 276 NNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQ 335 NNRLKR++DL AP+IIV NEKRMLQE+VDAL DNGRRGR +TG RPLKSL+D++KGKQ Sbjct: 351 NNRLKRMIDLGAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQ 410 Query: 336 GRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIK 395 GRFRQNLLGKRVDYSGRSVI VGP L+LHQCGLPK MALELFKPF+ +L + A I+ Sbjct: 411 GRFRQNLLGKRVDYSGRSVIIVGPQLKLHQCGLPKLMALELFKPFVMKRLVEKSYAQNIR 470 Query: 396 AAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCA 455 +AK+MVER+ VWD+L+E I EHPV+LNRAPTLHRLGIQAFEPVL+EGKAIQLHPL C Sbjct: 471 SAKRMVERQRPEVWDVLEEAIAEHPVMLNRAPTLHRLGIQAFEPVLVEGKAIQLHPLACE 530 Query: 456 AYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTR 515 A+NADFDGDQMAVH+PL+ EAQ EAR LM+++NNILSPA+G+P+ +P D+V GLY++T Sbjct: 531 AFNADFDGDQMAVHLPLSAEAQAEARVLMLASNNILSPASGKPLAMPRLDMVTGLYFLTL 590 Query: 516 DCVNAK--GEGMVL----TGPK--------EAERLYRSGLASLHARVKVRITEYE--KDA 559 + + GEG GPK EA G+ L A ++VRI+ +D Sbjct: 591 EKSEDQLGGEGAYHEADENGPKRGTYSSFAEALMARDRGVLGLQAPIEVRISHLRPPEDI 650 Query: 560 NGELV------AKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTC---YR 610 EL + TT+GR + ++P P+ VN + KKA + ++N Y Sbjct: 651 EAELFPDGWQRGQKWTAHTTLGRIMFNELLPWNYPF--VNGVMAKKAQAVIINDLAARYP 708 Query: 611 ILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQS 670 ++ + TV D++ GF +A RS ++ +DD+++ K EI+ E + A I+++ Sbjct: 709 MITVAQTV---DKMKDAGFYWATRSCVTISMDDVLVLPNKEEILQRYEKQAATIEKKLAR 765 Query: 671 GLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGA 730 G + ERY ++D+W D V +++ E + D N I M+ SGA Sbjct: 766 GKINNEERYRSLVDLWKECTDFVGESV------EKIYPDD---------NPIPMIVKSGA 810 Query: 731 RGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKT 790 G+ QI LAGM+G++ G I PI +FREGL+VL+YF ++HG+RKGLADTAL+T Sbjct: 811 AGNMRQIWTLAGMKGMVTNSRGDYITRPIKTSFREGLSVLEYFNNSHGSRKGLADTALRT 870 Query: 791 ANSGYLTRRLVDVAQDLVVTEDDCGTHEGI---MMTPVI--EGGDVKEPLRDRVL----- 840 A+SGYLTRRLVDVAQD++V EDDCGT +G+ + PV+ EG + E R L Sbjct: 871 ADSGYLTRRLVDVAQDVIVREDDCGTRKGLEVDVAKPVLDAEGNETGEFTRAEFLETALI 930 Query: 841 GRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYG 900 GR A+D + D++ R + + + V VR+V+ C+T GVCA CYG Sbjct: 931 GRYLAKDAVN-DNGDVIYERGAFVGDAEAKKMVAEGVRTATVRTVMMCETATGVCATCYG 989 Query: 901 RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFH 936 R +A G ++ GEA+G++AAQSIGEPGTQLTMRTFH Sbjct: 990 RSMATGQKVDIGEAVGIVAAQSIGEPGTQLTMRTFH 1025 Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 98/206 (47%), Positives = 145/206 (70%), Gaps = 14/206 (6%) Query: 17 FDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYK 76 FD ++I LA+ D IR WS GEVKKPETINYRT KPE+DGLFC RIFGP +D+EC CGKYK Sbjct: 7 FDELRIGLATADDIRRWSHGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWECACGKYK 66 Query: 77 RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIE 136 R++++G++CE+CGVEVT++KVRRERMGHIELA+P HIW+ K +PSR+G LLD+ +D+E Sbjct: 67 RVRYKGIVCERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDLAPKDLE 126 Query: 137 RVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQ 196 +++YF + ++ T+++ + T+++ L+A D F K EA + +L + Sbjct: 127 KIIYFAANII-----TSVDEEARHTDQETLEA-----DIFMEKKEVEAD----RDEELAE 172 Query: 197 ECEQLREELNETNSETKRKKLTKRIK 222 ++L E+L E S + ++++ Sbjct: 173 RQQKLEEDLKELESNGAKADAKRKVQ 198 Score = 200 bits (508), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 109/243 (44%), Positives = 160/243 (65%), Gaps = 13/243 (5%) Query: 1138 LPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDP--YEEMI----- 1190 LPRV +LFEAR PK A +A G + ++ L ITP +G D YE++ Sbjct: 1037 LPRVQELFEARVPKNQAPIASTEGTIKL-EDDGNFYTLTITPDNGEDEVVYEKLSKRQGL 1095 Query: 1191 -----PKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQG 1245 P + + G+ V G + G PH++LR+ GV V ++++ +VQ VYR QG Sbjct: 1096 AVTQEPGGFEHQLRTGDHVVTGQPLLRGAPDPHEVLRVEGVTGVQKHLIEQVQKVYRDQG 1155 Query: 1246 VKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRD 1305 V I+DKHIE+IVRQMLR+ T+V++GS++ L G ++ + + N+ + NG GA + ++ Sbjct: 1156 VAIHDKHIEIIVRQMLRRLTVVDSGSTELLPGSLIDRNEARAINKAVATNGGEGAAFRQE 1215 Query: 1306 LLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAY 1365 ++GITKASLATES++SAASFQETTRVLT+AA+ + D+L GLKENVI+G+LIPAGTG + Sbjct: 1216 IMGITKASLATESWLSAASFQETTRVLTDAAINKRSDKLIGLKENVIIGKLIPAGTGISR 1275 Query: 1366 HQD 1368 +++ Sbjct: 1276 YRN 1278 >UniRef50_Q1J0P7 DNA-directed RNA polymerase subunit beta' n=11 Tax=Bacteria RepID=RPOC_DEIGD Length = 1537 Score = 746 bits (1927), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/836 (48%), Positives = 550/836 (65%), Gaps = 73/836 (8%) Query: 153 NLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSET 212 +L R+Q+ E Y +F+AKMGAEA++ LL +DL+Q +L E++ + NS Sbjct: 445 DLVRKQVRVIESY---------DFEAKMGAEAVKELLDDLDLDQLEAELSEQMKD-NSRH 494 Query: 213 KRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRV 272 KR K KR++++ AF +SGN P WMIL +PV+PPDLRP+V +DGGRFATSDLNDLYRR+ Sbjct: 495 KRAKARKRLEVVRAFKRSGNHPSWMILETVPVMPPDLRPMVQVDGGRFATSDLNDLYRRL 554 Query: 273 INRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITG-SNKRPLKSLADMI 331 INRNNRLK+L+ APD+I+RNEKRMLQEAVDAL+DNGRRG +T + R L+SL D++ Sbjct: 555 INRNNRLKKLIGQGAPDMIIRNEKRMLQEAVDALIDNGRRGSPVTNPGSDRSLRSLTDLL 614 Query: 332 KGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLA 391 GKQGRFRQNLLGKRVDYSGRSVI VGP L+LHQCG+PK+MALELFKPF++ LE +G Sbjct: 615 GGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGVPKRMALELFKPFLFKVLEEKGEV 674 Query: 392 TTIKAAKKMVEREEAV---VWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQ 448 T IK A+KM+ER VWD L+EVI + VLLNRAPTLHRLGIQAFEPVL+EG++IQ Sbjct: 675 TNIKQARKMLERYRDTRDSVWDALEEVIEDKVVLLNRAPTLHRLGIQAFEPVLVEGQSIQ 734 Query: 449 LHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVL 508 LHPLVC A+NADFDGDQMA+HVPL+ +AQ EAR M+S +N+LSPANGEP + PS+D++L Sbjct: 735 LHPLVCEAFNADFDGDQMAIHVPLSAQAQAEARIQMLSAHNLLSPANGEPNVKPSRDIIL 794 Query: 509 GLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITE-------YEKDANG 561 G++ +T+ + G G ++A + G +L+ ++V E Y + Sbjct: 795 GIFTLTQLRKDNLGAGSEFANEQDALKALDEGRVALNTPIRVNGVETSPGRLKYVFSSPD 854 Query: 562 ELVAKT-----------------SLKDTTVGRAILWMIVPKGLPY------SIVN--QAL 596 E + ++ +T+ GR + +V + L ++VN A Sbjct: 855 EAIMAVDRGEIDYQDHVRIRLNGTVYETSAGRVMFRRLVQEALGAQGHLVDTLVNLDTAY 914 Query: 597 GKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISE 656 K ++ M+ CY+ LG++ T D + +GF + SG ++GIDD+V+P K E+++E Sbjct: 915 EKDSLKDMVMACYKELGIEATAGLLDALKDSGFKLSTISGITIGIDDIVLPPNKRELLAE 974 Query: 657 AEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQ 716 A+ ++A I++ ++ G +T ERY +V+ +W D V A+ +N + Sbjct: 975 ADEKLAAIEQNYEFGFMTDEERYKQVVQLWNDTTDEVKNAVFENFS------------RN 1022 Query: 717 VSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFIST 776 FN +++M+ SGARG+ QIRQLAGMRGLMA+PDGS IE PI A+FREGL VL+YFIST Sbjct: 1023 YPFNPLWIMSQSGARGNPQQIRQLAGMRGLMARPDGSTIEVPIRASFREGLTVLEYFIST 1082 Query: 777 HGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLR 836 HGARKG ADTAL+TA+SGYLTR+LVDVA ++VV + DCGT + +M P+ + R Sbjct: 1083 HGARKGGADTALRTADSGYLTRKLVDVAHEVVVRDVDCGTTDYTVM-PLGTTDERTGEWR 1141 Query: 837 DR--------VLGRVTAEDV-LKPGTADILVPRNTLLHEQWCDLL--EENSVDAVKVRSV 885 R + GR DV L G ++P +L + + + ++ V VR+ Sbjct: 1142 TRKGSEIETAIYGRTLTADVELSDGR---VIPAGQMLSLEDVKAITRDAKAIGEVFVRTP 1198 Query: 886 VSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAA 941 ++C GVC CYG DL++ ++ GEA+GV+AA+SIGEPGTQLTMRTFH GG A Sbjct: 1199 LNCRVRAGVCQKCYGYDLSQAKPVSLGEAVGVVAAESIGEPGTQLTMRTFHTGGVA 1254 Score = 209 bits (531), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 90/156 (57%), Positives = 120/156 (76%), Gaps = 5/156 (3%) Query: 15 EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74 ++F ++IA+ASP IR WSFGEV+KPETINYRT KPER+GLF RIFGP+KDYEC CGK Sbjct: 2 KDFSKVRIAIASPAKIREWSFGEVEKPETINYRTLKPEREGLFDERIFGPIKDYECACGK 61 Query: 75 YKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRD 134 YKR ++ G +CE+CGVEVT +KVRR RMGHI+LA+P AHIW++K PS+IG LLD+ Sbjct: 62 YKRQRYEGKVCERCGVEVTSSKVRRYRMGHIDLATPAAHIWYVKDTPSKIGTLLDLSAAQ 121 Query: 135 IERVLYFESYVVIEGGMTN-----LERQQILTEEQY 165 +E+VLYF S++V + L R ++L++++Y Sbjct: 122 LEKVLYFSSFLVTDPRNAQKDGRPLRRGELLSDDEY 157 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 122/236 (51%), Positives = 155/236 (65%), Gaps = 6/236 (2%) Query: 1130 GTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDG---SDPY 1186 G DIT GLPRV +LFEAR+PK A++A+ G+V +E + R LV + S Sbjct: 1255 GGGDITMGLPRVIELFEARKPKTQAVVADRDGVVRIEEEEE--RYLVRIEAEDEAFSSKT 1312 Query: 1187 EEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGV 1246 I K +L V +G+ VE G ++ G PHD+L + A RY+V EVQ VYR QGV Sbjct: 1313 PMKISKSLRLIVRDGDHVEAGQPLTRGAINPHDLLLYKDTDAAQRYLVEEVQRVYRSQGV 1372 Query: 1247 KINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDL 1306 K++DKHIEVIVRQMLR I + G +D LEG+ VE V AN L GK A++ L Sbjct: 1373 KVHDKHIEVIVRQMLRYVEITDGGDTDLLEGQTVERWEVDQANDAL-PEGKTPASWKPVL 1431 Query: 1307 LGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362 LGITK+SL T+S++SAASFQ TT VLTEA++ G+ DEL GLKENVI+G+LIPAGTG Sbjct: 1432 LGITKSSLTTKSWLSAASFQHTTHVLTEASMRGQVDELIGLKENVILGKLIPAGTG 1487 >UniRef50_P47582 DNA-directed RNA polymerase subunit beta' n=6 Tax=Mycoplasma RepID=RPOC_MYCGE Length = 1292 Score = 743 bits (1919), Expect = 0.0, Method: Compositional matrix adjust. Identities = 438/1124 (38%), Positives = 635/1124 (56%), Gaps = 144/1124 (12%) Query: 19 AIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRL 78 AIK+++AS D I +WS GEV K ETINY++ KPE GLF IFGPVKDYEC CGK+K++ Sbjct: 19 AIKLSIASNDTILNWSEGEVTKAETINYKSLKPEPGGLFDEAIFGPVKDYECACGKFKKI 78 Query: 79 KHRGVICEKCGVEVTQTKVRRERMGHI-------------ELASPTA------------- 112 K+RGV C++CGV VT++ VRRERMGHI EL SP+ Sbjct: 79 KYRGVRCDRCGVWVTESIVRRERMGHIALVSPVAHIWMSKELPSPSKISLVLNISYKEVE 138 Query: 113 -HIWFL-------------KSLPSRIGLLLDMP-------LRDIERVL-YFESYVVIEGG 150 ++F+ K +P + +LD+ + + RV+ Y ++ Sbjct: 139 QVLYFVNYIVLDTGKIKDDKIMPFKFKEVLDLTGKGSLSTRQKMRRVIGYIFRNLIKSKS 198 Query: 151 MTNLERQQILTEEQYLDALE-EFGDEFD---------AKMGAEAIQALLKSMDLEQECEQ 200 + + +I E +L D F+ +GAEAI LL +DL E + Sbjct: 199 SEDYRKGKIFYESLKNSSLPFSLNDAFNYIKKYTGFRVGIGAEAILELLNKIDLNLEFSR 258 Query: 201 LREELNETNSET----KRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLD 256 L + L + ++ K KK+ ++++ + F S P+ MIL +PV+PPD+RP++ LD Sbjct: 259 LNDALRKAKKDSVEDAKVKKILRQLETISWFRNSKLHPKNMILHTVPVIPPDIRPIIQLD 318 Query: 257 GGRFATSDLNDLYRRVINRNNRLKRLL-DLAAPDIIVRNEKRMLQEAVDALLDNGRRGRA 315 G +F TSD+N+ YRRVI RN+RL+R+L D P I+V NEKR+LQE+VDAL DN R + Sbjct: 319 GAKFTTSDINNFYRRVIIRNDRLRRILEDGTVPSIVVNNEKRLLQESVDALFDNSSRHKP 378 Query: 316 ITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALE 375 +KR LKSL D +KGKQG FR NLLGKRVDYSGRSVI VGP L++++ G+P M L+ Sbjct: 379 SLSKDKRSLKSLTDRLKGKQGLFRHNLLGKRVDYSGRSVIVVGPELKMYEVGIPALMILK 438 Query: 376 LFKPFIYGKL---------ELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRA 426 LFKPFI L E+R +A +I+ A+ M++ ++ ++W I+ +VI++ PVLLNRA Sbjct: 439 LFKPFIIHGLINKFDENGNEIRPIAASIRQAEDMIKNQDDLIWGIVYDVIKDRPVLLNRA 498 Query: 427 PTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMS 486 PTLHRLGIQAFEP +++GKAI+LHPLV A+NADFDGDQMAVHVPL+ A EARA++++ Sbjct: 499 PTLHRLGIQAFEPRIVDGKAIRLHPLVTTAFNADFDGDQMAVHVPLSENAVNEARAVLLA 558 Query: 487 TNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHA 546 + +IL +G PI+ P+QD+VLG YY+T + GEG++ + EA Y S LHA Sbjct: 559 SKHILGLKDGRPIVTPTQDMVLGNYYLTTERKGQLGEGIIFSTVYEARAAYESQKVHLHA 618 Query: 547 RVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPY--------------SIV 592 V + + N + + +L TTVG+ I ++ +PY IV Sbjct: 619 IVGISTKAF---PNKKFACQGTLI-TTVGKIIFNDVLGNNVPYINDGEFDENACPEKFIV 674 Query: 593 NQ---------------ALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGA 637 Q A KK ISK+++ Y +L K D I GF Y+ S Sbjct: 675 KQGEDVRQSILKHQIIPAFSKKVISKLIDLLYLLLEFKDLPKTLDNIKALGFKYSTFSST 734 Query: 638 SVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAM 697 +V + D+ K A+ +V + ++ + GL+T ERY +V+ +W ++VS + Sbjct: 735 TVSVFDIPKYTNKQNYFDSADQQVLKYKQFYNKGLLTDDERYKRVVKLWNNVKEKVSDEI 794 Query: 698 MDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDG----- 752 + ++ E Q NSI +MADSGARG+ + QL GMRGLM+K Sbjct: 795 QNLIKQE-----------QYRDNSIVVMADSGARGNISNFTQLFGMRGLMSKSFNYERNN 843 Query: 753 ------SIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQD 806 IE PI +F EGL + +YF S++GARKG+ DTA+KTA SGY+TR+LVD + Sbjct: 844 QSKIIKDTIEVPIKHSFFEGLTINEYFNSSYGARKGMTDTAMKTAKSGYMTRKLVDATHE 903 Query: 807 LVVTEDDCGTHEGIMMTPVIE--GGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLL 864 L++ DDCGT +GI++ ++E + E L DR++ R + ++ P T +V N+L+ Sbjct: 904 LIINHDDCGTRKGIVVEAIVETKTKSLIESLFDRIVNRYSITPIVDPETQKTIVEANSLI 963 Query: 865 HEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIG 924 Q + S+ V VRSV+ C+ + G+C +C+G DL+ G ++ G A+GVIAAQSIG Sbjct: 964 TTQLAKQICATSIKEVLVRSVIYCERENGICQYCFGIDLSTGKLVELGTAVGVIAAQSIG 1023 Query: 925 EPGTQLTMRTFHIGGAASR----AAAESSIQV------KNKGSIKLSNVKSVVNSSGKLV 974 EPGTQLTMRTFH GG ++ E Q+ K+ +S VK V S Sbjct: 1024 EPGTQLTMRTFHTGGVSTENNLAQGFERLKQIFEVVTPKDFEKAVISEVKGTVKS----- 1078 Query: 975 ITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVA 1018 IT+ +++ + + Y +P+ A + G+QV+ G + Sbjct: 1079 ITTVQNAQEVVIKSNVDERIYTIPFSAQIRVHVGDQVSPGSKIT 1122 Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 84/233 (36%), Positives = 134/233 (57%), Gaps = 4/233 (1%) Query: 1133 DITGGLPRVADLFEARRPK--EPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMI 1190 ++ G R+ +FE PK E A+++E+ G V + + +VI D I Sbjct: 1044 NLAQGFERLKQIFEVVTPKDFEKAVISEVKGTVKSITTVQNAQEVVIK--SNVDERIYTI 1101 Query: 1191 PKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKIND 1250 P Q+ V G++V G I++G +LR+ G+ V +Y++ E+Q VYR+QG+ I D Sbjct: 1102 PFSAQIRVHVGDQVSPGSKITEGSVDIKQLLRIAGIQRVRQYMIVEIQKVYRIQGIDIAD 1161 Query: 1251 KHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGIT 1310 K++E+I+RQ+ + +AG+S+ G+ V + N+ L GK+ + GI Sbjct: 1162 KYVEIIIRQLTNLLQVTDAGNSNLFVGQLVHSHYLNELNKSLLLAGKMPVIAINQVFGID 1221 Query: 1311 KASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGY 1363 +A+ + SF+SAASFQ+T ++LT+AAV + D L GLKENVI+G IPAGTG+ Sbjct: 1222 EAASKSNSFLSAASFQDTKKILTDAAVKNQVDYLLGLKENVIIGGKIPAGTGF 1274 >UniRef50_Q3M5C9 DNA-directed RNA polymerase subunit gamma n=11 Tax=cellular organisms RepID=RPOC1_ANAVT Length = 625 Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/564 (61%), Positives = 439/564 (77%), Gaps = 19/564 (3%) Query: 13 KTEEFDAIKIALASPDMIRSWS---------FGEVKKPETINYRTFKPERDGLFCARIFG 63 +T +FD +KI LASP+ IR W GEV KPETINYRT KPE DGLFC RIFG Sbjct: 5 QTNQFDYVKIGLASPERIRQWGERTLPNGQVVGEVTKPETINYRTLKPEMDGLFCERIFG 64 Query: 64 PVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSR 123 P KD+EC CGKYKR++HRG++CE+CGVEVT+++VRR RMG+I+LA+P AH+W+LK +PS Sbjct: 65 PAKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGYIKLAAPVAHVWYLKGIPSY 124 Query: 124 IGLLLDMPLRDIERVLYFESYVVIE-GGMTNLERQQILTEEQYLDALEEFGDE------F 176 I +LLDMPLRD+E+++YF SYVV+ G L +Q+L+E+Q+L+ ++ E Sbjct: 125 ISILLDMPLRDVEQIVYFNSYVVLSPGNAETLTYKQLLSEDQWLEIEDQIYSEDSQLQGV 184 Query: 177 DAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEW 236 + +GAEA+ LL ++LEQE E LREE+ + KR KL KR+++++ F+ +G+KPEW Sbjct: 185 EVGIGAEALLRLLADINLEQEAESLREEIGSAKGQ-KRAKLIKRLRVIDNFIATGSKPEW 243 Query: 237 MILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEK 296 M++TV+PV+PPDLRP+V LDGGRFATSDLNDLYRRVINRNNRL RL ++ AP+IIVRNEK Sbjct: 244 MVMTVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVRNEK 303 Query: 297 RMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIT 356 RMLQEAVDAL+DNGRRGR + G+N RPLKSL+D+I+GKQGRFRQNLLGKRVDYSGRSVI Sbjct: 304 RMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRSVIV 363 Query: 357 VGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVI 416 VGP L++HQCGLP++MA+ELF+PF+ +L G+ IKAAKK++ R + VWD+L+EVI Sbjct: 364 VGPKLKIHQCGLPREMAIELFQPFVINRLIRSGMVNNIKAAKKLISRNDPSVWDVLEEVI 423 Query: 417 REHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEA 476 HPV+LNRAPTLHRLGIQAFEP+L+EG+AIQLHPLVC A+NADFDGDQMAVHVPL+LE+ Sbjct: 424 EGHPVMLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLSLES 483 Query: 477 QLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNA-KGEGMVLTGPKEAER 535 Q EAR LM+++NNILSPA G PII PSQD+VLG YY+T + A KG G + Sbjct: 484 QAEARLLMLASNNILSPATGRPIITPSQDMVLGAYYLTAENPGATKGAGKYFASLDDVIM 543 Query: 536 LYRSGLASLHARVKVRIT-EYEKD 558 ++ LHA + VR E E D Sbjct: 544 AFQQEQIDLHAYIYVRFDGEVESD 567 >UniRef50_Q110H2 DNA-directed RNA polymerase subunit gamma n=543 Tax=cellular organisms RepID=RPOC1_TRIEI Length = 672 Score = 727 bits (1876), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/569 (59%), Positives = 442/569 (77%), Gaps = 21/569 (3%) Query: 15 EEFDAIKIALASPDMIRSWS---------FGEVKKPETINYRTFKPERDGLFCARIFGPV 65 + FD +KI LASPD IR W GEV KPETINYRT KPE DGLFC RIFGP Sbjct: 6 QRFDYVKIGLASPDRIRGWGERTLPNGTVVGEVTKPETINYRTLKPEMDGLFCERIFGPA 65 Query: 66 KDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIG 125 KD+EC CGKYKR++HRG++CE+CGVEVT+++VRR RMGHI+LA+P H+W+LK +PS + Sbjct: 66 KDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGHIKLAAPVTHVWYLKGIPSYMA 125 Query: 126 LLLDMPLRDIERVLYFESYVVIE-GGMTNLERQQILTEEQYLDALEEFGDE------FDA 178 +LLDMPLRD+E+++YF +YVV+E G +L +Q+L+E+ +L+ ++ E D Sbjct: 126 ILLDMPLRDVEQIVYFNAYVVLEPGNHESLSYKQLLSEDVWLEIEDQIYSEDSEIVGVDV 185 Query: 179 KMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMI 238 +GAEA+Q LL ++DLE E E+LREE+ + + KR KL KR+++++ F+ +G++PEWM+ Sbjct: 186 GIGAEALQVLLANLDLEVEAEKLREEIANSKGQ-KRAKLIKRLRVIDNFIATGSRPEWMV 244 Query: 239 LTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRM 298 L +PV+PPDLRP+V LDGGRFATSDLNDLYRRVINRNNRL RL ++ AP+II+RNEKRM Sbjct: 245 LDAIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIIRNEKRM 304 Query: 299 LQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVG 358 LQEAVDAL+DNGRRGR + G+N RPLKSL+D+I+GKQGRFRQNLLGKRVDYSGRSVI VG Sbjct: 305 LQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRSVIVVG 364 Query: 359 PYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIRE 418 P L ++QCGLP++MA+ELF+PF+ +L +GL IKAAKK++++ + VWD+L+EVI Sbjct: 365 PKLAINQCGLPREMAIELFQPFVIHRLIRQGLVNNIKAAKKLIQKGDPNVWDVLEEVIDG 424 Query: 419 HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQL 478 HPV+LNRAPTLHRLGIQAFEP+L+EG+AIQLHPLVC A+NADFDGDQMAVHVPL+LE+Q Sbjct: 425 HPVMLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLSLESQA 484 Query: 479 EARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKG-EGMVLTGPKEAERLY 537 EAR LM+++NN+LSPA G PII PSQD+VLG YY+T + +G + + P + Y Sbjct: 485 EARLLMLASNNVLSPATGRPIITPSQDMVLGCYYLTAENHKLQGSKALYFANPDDVILAY 544 Query: 538 RSGLASLHARVKVRI---TEYEKDANGEL 563 + LH V +R+ E E D E+ Sbjct: 545 QQDKIDLHTYVYLRLAPDVEIETDKPEEI 573 >UniRef50_O21238 DNA-directed RNA polymerase n=3 Tax=Eukaryota RepID=O21238_RECAM Length = 1384 Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust. Identities = 461/1419 (32%), Positives = 747/1419 (52%), Gaps = 157/1419 (11%) Query: 20 IKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIF--GPVKDYECLCGKYKR 77 IK++L P+ I S GEV +T+N +T++PE GLFC +IF +Y C Y++ Sbjct: 34 IKLSLFDPEQILKKSSGEVCTSKTLNSKTYEPEDGGLFCNKIFKTNSKNNYICNVCSYRQ 93 Query: 78 LK-HRGVICEKCG--VEVTQTKVRRERMGHIELASPTAHIWFLKS-LPSRIGLLLD--MP 131 K +R C +CG ++ ++ ++ MGHIEL SP H W L++ + R+ + L+ Sbjct: 94 SKPYR---CLRCGSNTKLDKSNIQNLSMGHIELISPIPHPWLLRTKIIHRLAVGLNNIYD 150 Query: 132 LRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKS 191 ++I+++L +T+ E T Y + ++ F+ + L+ Sbjct: 151 YKEIDKIL-----------LTDPE-----TIYNYFEQMDLLDVYFNLR------NYLIN- 187 Query: 192 MDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRP 251 D + + + + K+I+++ ++ +PEW L +PVL P RP Sbjct: 188 -DFIIKKNKKNINNINIDKNIIYYAIKKKIRIITTLIRLKQRPEWFFLKRIPVLSPTYRP 246 Query: 252 LVPLDGGRFATSDLNDLYRRVINRNNRLKRLL-------------------DLAAPDIIV 292 L+ LD F SD+N LY+ +I RNN LK LL D D + Sbjct: 247 LMKLDDKLFVASDINFLYQNIIERNNILKELLKRYSLEKIDRISSLFTEIIDEVKKDNPI 306 Query: 293 RNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGR 352 K LQ+AV L+D+ IT NK +K L+ GK+GRFR+++LGKR+++SGR Sbjct: 307 IKGKINLQKAVTTLMDSSFIKGIITFKNKSLIKRLS----GKKGRFRKDILGKRINFSGR 362 Query: 353 SVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGL----ATTIKAAKKMVEREEAV- 407 +VIT GP L L+QCGLP ++ LELFKPFI L++R L T++K K + ++ + Sbjct: 363 TVITSGPRLHLNQCGLPIELVLELFKPFII--LKMRDLNICSQTSLKNLKTYDDFKQILF 420 Query: 408 -------VWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNAD 460 V+ +++ +I +HPVLLNRAPTLHR+ IQ F P+LI KAIQLHPLVC+++NAD Sbjct: 421 NKFTINLVFKLINSIISKHPVLLNRAPTLHRMNIQTFSPLLIYTKAIQLHPLVCSSFNAD 480 Query: 461 FDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNA 520 FDGD MA+++P TL +Q+E+R LMMS+ NI+SP+ EPII P+QD+V GLYY T + Sbjct: 481 FDGDTMAIYIPHTLRSQIESRVLMMSSTNIISPSTQEPIISPTQDIVFGLYYATVMYQGS 540 Query: 521 KGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILW 580 GEG + E + LH+ + ++ +KD ++ TT GR +L+ Sbjct: 541 IGEGRLYGDVNEIKNAINFLELDLHSPISFKL---DKD---------NVVLTTSGRILLY 588 Query: 581 MIVPK--GLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGAS 638 ++ + + + VN+ KK I ++ + L T DQIM GF YA ++G S Sbjct: 589 YLLLEFVNIDFKYVNKVFDKKEIVSLIKMISNLNNLNKTSFILDQIMSFGFYYAYKAGIS 648 Query: 639 VGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMM 698 + +D+ P K + + + +V + + F G+++ E+ ++++ W+ + ++ ++ Sbjct: 649 LHKNDINTPNLKELFVYKTKKKVEDDLKNFSRGIISIDEKSKRLLNEWSKCSSILANQIL 708 Query: 699 DNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETP 758 ++ TV NR SIYM+ +SGARGS Q+RQL G+RGLM KP G I+E P Sbjct: 709 KDV-IYTVPNRKS---------SIYMLINSGARGSMVQMRQLCGIRGLMIKPSGDILEIP 758 Query: 759 ITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHE 818 I +NF+EGL+V+ YF STHGARKG+ DT+LKTA SGYLTR+L A+DL +TE DCGT + Sbjct: 759 IISNFKEGLSVVDYFNSTHGARKGVIDTSLKTAASGYLTRKLFYAAKDLFITEIDCGTRK 818 Query: 819 GIMMTPVIEGGDVK--------EPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCD 870 GI+ G++K + ++GR+ ++ P T +ILV + ++ + Sbjct: 819 GIIF------GNLKYQRDGYKIDSFYKNIVGRILVRNIKNPYTGEILVKKGLIVTNLVLN 872 Query: 871 LLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQL 930 L+ + ++ V RS ++C+T G+C CYG I++ E+IG+IAAQSIGEPGTQL Sbjct: 873 LIIKFGIEFVVTRSPMTCETRNGICRKCYGSIGNNNEIVSLEESIGIIAAQSIGEPGTQL 932 Query: 931 TMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSV--VNSSGKLVITSRNTELKLIDEF 988 TMRTFH GG R A E+ + + + N K V +NS K+ I RN+++ L D Sbjct: 933 TMRTFHQGGTVLRGANENRLYSSYNARVLIYNRKVVKGINSITKINI-HRNSKILLFDLN 991 Query: 989 GRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITR 1048 SYK+PYGA L DG ++ G + +++ +T+P+++ G V F + + + Sbjct: 992 YSLLISYKIPYGATLYVDDGSIISKGTLLFDYNSYTIPILSNYKGNVFFQEKNQKISSVK 1051 Query: 1049 QTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQ 1108 D ++G+ + G + + + N + I +M + ++ Sbjct: 1052 VRDSMSGIV------KSNFNLGINNFKRWFLV----NNSLKIENINM-------SQDLLN 1094 Query: 1109 LEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKE 1168 + + + GD + RI + +DITGGL +++ LFE + + ++ + G + F E Sbjct: 1095 IMENSIVKKGDVIGRINISNKIVQDITGGLSKISKLFECIQ-NQSCLITPVEGYIKFNYE 1153 Query: 1169 TKGKRRLVITPVDGSDPYEEMIPK------WRQLNVFEGERVERGDVISDGPEAPHDILR 1222 + ++ ++++ + L V + + V +GD++S G +I Sbjct: 1154 PSVSKFVLYVLTKDEKTKKDLLVRIGTVHELDNLFVRQNDYVYQGDLLSSGIVPIREIAE 1213 Query: 1223 LRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVN-----------AGS 1271 + +++ ++Q Y GV IN KHIEVI+ QM K T ++ + Sbjct: 1214 KIEFESSFYHLLEQIQSTYFENGVTINQKHIEVIISQMFFKITCMDLYLDKDHFINETKT 1273 Query: 1272 SDFLEGEQVEYSRVKIANRELEAN--------GKVGATYSRDLLGITKASLATESFISAA 1323 S+ E ++Y + N++ + G + L GI++ + SF+S+A Sbjct: 1274 SEIKEKINIKYKPTRF-NKDFFCHQSIRLLVMGLLPIKGKISLGGISQIGVLGGSFLSSA 1332 Query: 1324 SFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362 SFQ+T++VLTEAA+ D L G + N+ G L+P GTG Sbjct: 1333 SFQKTSKVLTEAALWKGFDPLIGAQPNLFFGSLMPIGTG 1371 >UniRef50_A7BVC2 DNA-directed RNA polymerase n=1 Tax=Beggiatoa sp. PS RepID=A7BVC2_9GAMM Length = 761 Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/748 (47%), Positives = 516/748 (68%), Gaps = 23/748 (3%) Query: 632 AARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAAND 691 A R+G ++ +++M+IP +K ++I+EA ++ +IQ+Q+Q L+T +RYNK+ID+W +D Sbjct: 2 ATRAGITLSMEEMIIPSEKPKLINEALTKIEDIQKQYQKALITNNQRYNKIIDLWTKTHD 61 Query: 692 RVSKAMMDNLQTETVINRDGQEEKQVSF-----NSIYMMADSGARGSAAQIRQLAGMRGL 746 +++ A++++L + R + +Q S N++YMM D+G R + I QL+GMRGL Sbjct: 62 KMATAVLNHLSEKP---RQTAKYRQASNHPLPENNLYMMIDAGIR-NLMSISQLSGMRGL 117 Query: 747 MAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQD 806 M KPDGSI+E PITANFREGL+ QYFISTHG RKGLAD ALKTAN+GYLTRRLVDVAQD Sbjct: 118 MTKPDGSILEIPITANFREGLDAHQYFISTHGTRKGLADMALKTANAGYLTRRLVDVAQD 177 Query: 807 LVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHE 866 +++ + +CGT +GI MT + + + + DR+ GRVTAED+ + +V TLL E Sbjct: 178 VIIAKKNCGTTQGITMTALTKNDLLIKTFSDRIRGRVTAEDIYLQKSQKPVVKAGTLLDE 237 Query: 867 QWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEP 926 +W + LE+ + +KVRS ++C ++ GVCA CYGRDLA+G +I+ GEA+GVIAAQSIGE Sbjct: 238 KWIEKLEQWKIKQIKVRSPITCQSEHGVCALCYGRDLAQGQLIHVGEAVGVIAAQSIGEA 297 Query: 927 GTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSG---------KLVITS 977 GTQLTMRT+ G A + I++ KG +K ++K + ++ ++ S Sbjct: 298 GTQLTMRTYW-NGKIKHTATINHIKINAKGKVKFHHLKLIEQNATPNEKKKAKKPFIVVS 356 Query: 978 RNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRF 1037 + E+ ++D+ G+ +E +K+PYGA+L+ DG+QV G+ +A+WDP+ ++TEV+G++RF Sbjct: 357 QAGEISILDKAGQEQERHKIPYGAILSINDGDQVIVGQRIADWDPYNDLLVTEVTGYIRF 416 Query: 1038 TDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPA 1097 D+++G T+ +TD TGL+ L+V R K L+P + IVD N++ GT Sbjct: 417 VDIVEGTTVHSETDPKTGLTILIVKAPKLRPTYAKKLQPQINIVDKNNNELTFAGTSKKV 476 Query: 1098 QYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILA 1157 YFLP I+ +++G ++++GD +A++P E +DIT GL RVADLFEAR PKEPAILA Sbjct: 477 TYFLPAHTIINIKEGAKVNAGDIIAKLPFEPPKIRDITDGLLRVADLFEARIPKEPAILA 536 Query: 1158 EISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAP 1217 + SG VSFGKETK K R +IT +G E IPKWR +NV G++V+ G+++ +G P Sbjct: 537 QCSGTVSFGKETKTKHRFIITDEEGQQE-EHPIPKWRFINVSSGQQVDLGEMVVNGILNP 595 Query: 1218 HDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEG 1277 HDILRL+G A+ +Y++NE+Q++Y G+KINDKH EVI+RQMLR TI++ G + F G Sbjct: 596 HDILRLKGPLALVKYLINEMQEIYSSYGIKINDKHFEVIIRQMLRTLTIIDPGDTPFFSG 655 Query: 1278 EQVEYSRVKIANREL-EANGKVG--ATYSRDLLGITKASLATESFISAASFQETTRVLTE 1334 E V ++++ N+ + + + + G AT+ +LLGITK SL+TESFISAASF + RVL Sbjct: 656 EHVTRNQLETENQRIAKQSPRFGRLATWEANLLGITKTSLSTESFISAASFMDAARVLLA 715 Query: 1335 AAVAGKRDELRGLKENVIVGRLIPAGTG 1362 +A+ GK DELRG KENVI+GRLIPAGTG Sbjct: 716 SAIQGKYDELRGFKENVILGRLIPAGTG 743 >UniRef50_C5CGD8 DNA-directed RNA polymerase n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CGD8_KOSOT Length = 1560 Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/744 (48%), Positives = 483/744 (64%), Gaps = 65/744 (8%) Query: 152 TNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSE 211 T L+ I+ E +Y E + + + GA AIQ LL+S+DLE+ Q+ EL Sbjct: 300 TGLKVGDIIIENEYDAYKEIYPGKIECDYGALAIQKLLRSLDLEELKIQIEHELKGIPKS 359 Query: 212 TKRK-KLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYR 270 + R KL +R+K ++ F++SGNKPEW++L LPV+PP+LRP++ ++GGRFAT+DLNDLYR Sbjct: 360 SARALKLLRRLKFVKDFLKSGNKPEWIVLEALPVIPPELRPMIQIEGGRFATTDLNDLYR 419 Query: 271 RVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADM 330 RVINRNNRL +LL + APDIIVRNEKRMLQEAVD+L+ NGR G+A+T + RPLKSL D+ Sbjct: 420 RVINRNNRLAKLLSIGAPDIIVRNEKRMLQEAVDSLIYNGRVGKAVTDKSGRPLKSLTDL 479 Query: 331 IKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRG- 389 +KGK+GRFR+NLLGKRVDYSGR+VI VGP L++H+CG+PK+MA+ELFKPF+ GKL L G Sbjct: 480 VKGKKGRFRRNLLGKRVDYSGRAVIVVGPDLKIHECGIPKRMAMELFKPFVLGKL-LHGS 538 Query: 390 --LATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAI 447 T K K ++E+E W++L++VI+ HPVLLNRAPTLHR+ IQAF P L+EG AI Sbjct: 539 ESSKTARKLKKTIIEKEMPEAWEVLEDVIKGHPVLLNRAPTLHRISIQAFIPRLVEGNAI 598 Query: 448 QLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVV 507 QLHPLVCA +NADFDGDQMAVHVPL+ AQ EA+ LM+S N++SPANG+PI +P +D++ Sbjct: 599 QLHPLVCAPFNADFDGDQMAVHVPLSAAAQAEAKFLMLSRYNVISPANGKPISMPGKDII 658 Query: 508 LGLYYMT---------RDCVNAKGEGMVLTG----------------------PKEAERL 536 +G+YY+T + +N E + G EAE L Sbjct: 659 VGVYYLTTVDHEYKVFEEKLNKYQEELKSQGIDGVELRRRVREKALEKINWKFSSEAEAL 718 Query: 537 --YRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLP-YSIVN 593 Y G+ LH + V++ E + D L TTVGR I I+P+ L YS Sbjct: 719 LAYDIGIIKLHEPILVKLDENKGD----------LTLTTVGRIIFNAILPEDLKDYS--- 765 Query: 594 QALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEI 653 GKKAI ++ C++ G+ T D +M GF YA SG ++ I D+VI +K +I Sbjct: 766 TTFGKKAIKNLIYRCFQEYGIDRTADLLDDMMRLGFHYATISGLTISIRDIVIYPEKDKI 825 Query: 654 ISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQE 713 I EA +V +I++ ++ G + +R ++I IW TE ++ + E Sbjct: 826 IEEARKKVDKIEDLYRKGFLNELDRSQEIIKIWEKT-------------TEELMRKTFDE 872 Query: 714 EKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYF 773 K+ FN ++MM DSGARG+ Q++QLAGMRGLMA P G IE PI +NFR+GL L++F Sbjct: 873 FKKYPFNPVFMMVDSGARGNIDQLKQLAGMRGLMADPSGKTIEVPIISNFRDGLTELEFF 932 Query: 774 ISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKE 833 STHGARKG ADTAL+T+ +GYLTRRLVDVAQ + +T DCGT GI ++ E Sbjct: 933 TSTHGARKGSADTALRTSFAGYLTRRLVDVAQGVTITTPDCGTSNGIEAFEMMADDVTIE 992 Query: 834 PLRDRVLGRVTAEDVLKPGTADIL 857 L D + GRV AEDV+ P T ++L Sbjct: 993 KLEDFIFGRVLAEDVIDPETNEVL 1016 Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 83/137 (60%), Positives = 104/137 (75%) Query: 12 TKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECL 71 T + ++I +ASP+ IRSWS GEVKKPETINYRTFKPERDGLFC +IFGP KDYEC Sbjct: 5 TFNRKISTVQIKIASPERIRSWSSGEVKKPETINYRTFKPERDGLFCEKIFGPTKDYECA 64 Query: 72 CGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMP 131 CGKYK K+ G ICE+CGV V + RR R+GHIELA+P H+W+LKS PS + LL++P Sbjct: 65 CGKYKGKKYEGTICERCGVRVESKEARRRRIGHIELAAPVVHVWYLKSAPSILASLLNIP 124 Query: 132 LRDIERVLYFESYVVIE 148 +D+E ++Y+ S VIE Sbjct: 125 SKDLENIIYYGSKRVIE 141 Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 44/66 (66%), Positives = 54/66 (81%) Query: 879 AVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIG 938 +K+RSV++CD D GVCA CYG DL+ I+N GEA+G++AAQSIGEPGTQLTMRTFH G Sbjct: 1154 VIKIRSVLTCDADHGVCAMCYGMDLSNHEIVNVGEAVGIVAAQSIGEPGTQLTMRTFHTG 1213 Query: 939 GAASRA 944 G A+ A Sbjct: 1214 GIATGA 1219 Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/170 (38%), Positives = 100/170 (58%), Gaps = 5/170 (2%) Query: 1133 DITGGLPRVADLFEARRP-KEP-AILAEISGIVS-FGKETKGKRRLVITPVDGSDPYEEM 1189 DIT GLPR +LFEAR+ K+P A+ AE GIV + KG++++ I ++G E Sbjct: 1220 DITRGLPRAEELFEARKKLKDPEALFAEEEGIVKDIATDEKGRKKIYIETLEGKIK-EHD 1278 Query: 1190 IPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKIN 1249 + + V G++V +G+ ++ G P ++ GV Y++ E + VY QGV+I+ Sbjct: 1279 LSTVIKPRVEVGDKVLKGESLTTGTIRPRKLMEKLGVIPTAMYLLMETKRVYAEQGVEIH 1338 Query: 1250 DKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRE-LEANGKV 1298 DKH E+I+RQML +V+ GS+D+L G+ + VK NRE LE N KV Sbjct: 1339 DKHFELIIRQMLSMVEVVDPGSTDYLPGDLLSLQDVKKINREILEDNKKV 1388 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 57/139 (41%), Positives = 82/139 (58%), Gaps = 3/139 (2%) Query: 1243 LQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATY 1302 ++G I ++ + I+ +++ TI + ++ + + + I + ++ N K Y Sbjct: 1418 VEGEPITEELMNKIIETGIKEITIYDVTEDEYQKLLEEIDPELVIPQKTIQINPKETIKY 1477 Query: 1303 SRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362 R LL ITKASL + ++SAASFQ+T +VLTEA+V GK D L GLKENVIVG+LIPAGTG Sbjct: 1478 RRRLLRITKASLESHGWLSAASFQQTPQVLTEASVEGKVDYLLGLKENVIVGQLIPAGTG 1537 Query: 1363 ---YAYHQDRMRRRAAGEA 1378 YA Q R EA Sbjct: 1538 LDMYANIQIEEAREVTEEA 1556 >UniRef50_A7HNY1 DNA-directed RNA polymerase subunit beta' n=5 Tax=Bacteria RepID=RPOC_FERNB Length = 1650 Score = 659 bits (1699), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/723 (48%), Positives = 481/723 (66%), Gaps = 41/723 (5%) Query: 152 TNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNET-NS 210 T +++ Q++T++ Y + + +A+ GA AI+ LL+ +DLE ++ EL + S Sbjct: 434 TGIKKGQVITQQDYEAYSRIYPGKIEAETGAMAIKKLLEKIDLEVMKAEIEAELKKIPKS 493 Query: 211 ETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYR 270 + KKL K++K+++ + S KPEWM+L LPV+PP++RP++ +DGGRFAT+DLNDLYR Sbjct: 494 SVRAKKLLKKMKIVKDLIDSQTKPEWMVLEALPVVPPEIRPMIQIDGGRFATTDLNDLYR 553 Query: 271 RVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADM 330 RVI RNNRLK+LL++ AP++IVRNEKRMLQEAVD L+ NG+ G+A N R LKSL D+ Sbjct: 554 RVIMRNNRLKKLLEMNAPEVIVRNEKRMLQEAVDNLIFNGKIGKAYVDRNGRQLKSLTDL 613 Query: 331 IKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKL----E 386 I+GK+GRFR+NLLGKRVDYSGR+VI VGP+L++H+CGLPKKMALELF+PF+ +L Sbjct: 614 IRGKKGRFRRNLLGKRVDYSGRAVIVVGPHLKIHECGLPKKMALELFEPFVIAELSKEEN 673 Query: 387 LRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKA 446 T +K +K ++RE+ W+ L++VI+ VLLNRAPTLHR+ IQAFEP LIEG A Sbjct: 674 TEAPQTKVKKYRKELQREDPKAWEKLEKVIQGRVVLLNRAPTLHRMSIQAFEPKLIEGNA 733 Query: 447 IQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDV 506 IQLHPLVC +NADFDGDQMAVH+PL+ AQ EAR LM+S NI+SPA+G+PI +P +D+ Sbjct: 734 IQLHPLVCPPFNADFDGDQMAVHLPLSPAAQAEARLLMLSRYNIISPAHGKPISMPGKDI 793 Query: 507 VLGLYYMT-----RDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANG 561 V G+YY+T D + + P+EAE Y G LH + ++I + Sbjct: 794 VAGVYYLTMVDKNYDKIEPENIKWKFANPEEAELAYEFGFIKLHEPIIIKIND------- 846 Query: 562 ELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFA 621 ++K TT GR I I+P+ L N+ GK I ++ ++ G+ T Sbjct: 847 -----KAIK-TTFGRVIFNSILPEEL--RDYNKTFGKNGIKDVVYKTFKTHGIDRTADLL 898 Query: 622 DQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNK 681 D I GF YA SG ++ + D +I KK+EII+ A ++ I++ + GL++ E+Y + Sbjct: 899 DSIKDLGFHYATISGLTISLKDFMISPKKNEIITNAMKKIEYIEKLYDDGLLSDEEKYKE 958 Query: 682 VIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLA 741 I IW NL E G+ FN +Y+M DSGARG+ Q++QL+ Sbjct: 959 TIKIWTETT---------NLVQEETYRYLGEN----PFNPVYIMVDSGARGNKDQLKQLS 1005 Query: 742 GMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLV 801 GMRGLMA P G IE PI +NFREGL+VL++FISTHGARKG ADTAL+T+++GYLTRRLV Sbjct: 1006 GMRGLMADPSGRTIEIPIISNFREGLSVLEFFISTHGARKGSADTALRTSSAGYLTRRLV 1065 Query: 802 DVAQDLVVTEDDCGTHEGIMMTPVIEGGD--VKEPLRDRVLGRVTAEDVLKPGTADILVP 859 DV Q +VVTE DCGTHEG+ T +++ D V E + D + GRV A+D+ +PGT +ILV Sbjct: 1066 DVVQSVVVTEPDCGTHEGVRAT-LLKSSDNFVVEKIEDFIFGRVLAKDIYEPGTGNILVN 1124 Query: 860 RNT 862 NT Sbjct: 1125 PNT 1127 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 80/125 (64%), Positives = 98/125 (78%) Query: 19 AIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRL 78 ++ + +ASP++IR+WS GEVKK ETINYRTFKPERDGLFC RIFGPVKDYEC CGKY Sbjct: 11 SVNVRVASPEVIRNWSNGEVKKAETINYRTFKPERDGLFCERIFGPVKDYECACGKYSGK 70 Query: 79 KHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERV 138 K+ G +CEKCGV+V RR R GHIELA+P H+W+LK+ PS I LLDM ++DIE + Sbjct: 71 KYEGTVCEKCGVKVESKDARRRRFGHIELAAPVTHVWYLKNSPSVIATLLDMTVKDIETI 130 Query: 139 LYFES 143 +YF S Sbjct: 131 VYFGS 135 Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 108/305 (35%), Positives = 151/305 (49%), Gaps = 74/305 (24%) Query: 1131 TKDITGGLPRVADLFEARRP-KEP-AILAEISGIVSFGKETKGKRRLVITPVDGSDPYEE 1188 T DIT GLPRV +LFEAR+ K+P I +++ G V + K+ + + G YE Sbjct: 1325 TADITQGLPRVEELFEARKKTKDPEGIFSKVKGTVVDISNDEPKKIYIQDELGGIHEYE- 1383 Query: 1189 MIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKI 1248 +P ++NV G++V G ++ G IL G Y++ E++ VY QGV I Sbjct: 1384 -VPSRVRVNVTVGQKVLPGQSLTSGSLKVRKILEELGPEETATYLLKEIKRVYVQQGVDI 1442 Query: 1249 NDKHIEVIVRQMLRKATIVNAGSSDFLEGE-------------------QVEYSRVKIAN 1289 +DKH E+I+RQML KA ++++G ++FL G+ +VE +R KI Sbjct: 1443 HDKHFELIIRQMLNKAEVIDSGDTEFLPGDLVPISLLNKVNREIMEGNAKVEMNRKKIIG 1502 Query: 1290 RE----------------LEANG-----------------------------------KV 1298 RE L A G K Sbjct: 1503 RELAKHIIVKNEDGEIVELAAEGEEVTEELLEKLIEYGIKEVVIMNHDKEKEVYQILPKE 1562 Query: 1299 GATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIP 1358 Y R LL IT+ASL E ++SAASFQ+T +VLT+AA+ G D L+GLKENVIVG+LIP Sbjct: 1563 TVKYRRRLLRITQASLEYEGWLSAASFQQTQQVLTDAAIKGAVDYLKGLKENVIVGQLIP 1622 Query: 1359 AGTGY 1363 AGTG+ Sbjct: 1623 AGTGF 1627 Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 82/275 (29%), Positives = 137/275 (49%), Gaps = 40/275 (14%) Query: 773 FISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVK 832 F+S + R + + ++ + G + ++A+D+ T G++ + DV Sbjct: 1144 FLSNYKKRVNVVEESILDLSVGNIPEVYAELAEDI-------DTPSGLIPSETEIDWDVV 1196 Query: 833 EPLRDR-----------VLGRVTAEDVLKPGTADILVPRNTLLHEQWCD-----LLEENS 876 LRD ++G V +E+++ D + + E+ D LLEEN+ Sbjct: 1197 RKLRDAGIKNVKIKLYPIVGSVISEEIV----WDKDRKKQIAVEEEQVDVALAKLLEENN 1252 Query: 877 VDAVKVR------SVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQL 930 +D+V VR SV++C+++ GVCA CYG DL+ ++ GE++G+IAAQSIGEPGTQL Sbjct: 1253 IDSVYVRPEIYVRSVLTCESEHGVCAKCYGLDLSNHKVVTVGESVGIIAAQSIGEPGTQL 1312 Query: 931 TMRTFHIGGAASRAAAESS---IQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLI-- 985 TMRTFH GG A+ A ++ + K + + + + V+ N E K I Sbjct: 1313 TMRTFHTGGIATTADITQGLPRVEELFEARKKTKDPEGIFSKVKGTVVDISNDEPKKIYI 1372 Query: 986 -DEFGRTKESYKVPYGAVLAKGDGEQVAGGETVAN 1019 DE G E Y+VP + G++V G+++ + Sbjct: 1373 QDELGGIHE-YEVPSRVRVNVTVGQKVLPGQSLTS 1406 >UniRef50_A9BF32 DNA-directed RNA polymerase subunit beta' n=1 Tax=Petrotoga mobilis SJ95 RepID=RPOC_PETMO Length = 1643 Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/717 (47%), Positives = 484/717 (67%), Gaps = 54/717 (7%) Query: 174 DEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRK-KLTKRIKLLEAFVQSGN 232 ++F+ GAEAIQ LL +DLE +L EL + + ++++ K+ +R+KL++ F++SGN Sbjct: 394 EKFEYGYGAEAIQKLLTKIDLEVLKARLESELEKLDRKSQKSVKILRRLKLVKDFIKSGN 453 Query: 233 KPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIV 292 +PEW+I ++PV+PPDLRPL+ +DGGRFA +DLNDLYR+VINRNNRL++LL++ AP+IIV Sbjct: 454 QPEWLITNIIPVIPPDLRPLIQIDGGRFAATDLNDLYRKVINRNNRLRKLLEMEAPEIIV 513 Query: 293 RNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGR 352 RNEKR+LQ+AVD+L NGR G+ +T N+RPL+SL D++KGK+GRFR+NLLGKRVDYSGR Sbjct: 514 RNEKRILQQAVDSLFYNGRVGKPMTDRNRRPLRSLTDLLKGKKGRFRRNLLGKRVDYSGR 573 Query: 353 SVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKK----MVEREEAVV 408 +VI VGP L++H+CGLPKKMALELFKPF+ +L LR K+A+K ++E+E Sbjct: 574 AVIAVGPDLKIHECGLPKKMALELFKPFVLAEL-LRDSNVASKSARKFKKTIIEKEMPEA 632 Query: 409 WDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAV 468 W++L+EVI+ HPVLLNRAPTLHR+ IQAF P LIEG AI+LHPLVC +NADFDGDQMA+ Sbjct: 633 WEVLEEVIKGHPVLLNRAPTLHRVSIQAFIPKLIEGNAIRLHPLVCPPFNADFDGDQMAI 692 Query: 469 HVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLT 528 H+PL+ AQ E++ LM+S NI+SPANG+P+ +P +D++ G YY+T ++ + L Sbjct: 693 HIPLSNIAQAESKFLMLSRYNIISPANGKPLSMPGKDIIAGAYYLT---MHEDEKFKNLK 749 Query: 529 GPKEAERLYRSG---------LASLHARVKVRITE---YEKDANGELVAKTS-------- 568 P + L ++G L + +A ++I + Y +D G+L+ K S Sbjct: 750 VPTKVSELGKNGYVKHIFSEDLEATYAYEYLKIVDSDIYLQD--GKLIWKKSDLPLHEPV 807 Query: 569 ---LKD-----TTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIF 620 KD TT+G+ I VP+ L Q + KK + +++ + G+ T Sbjct: 808 AFRYKDGSILKTTIGKIIFNEEVPEDL--RDYTQKMDKKNLKELIFNTFEKHGIDRTADL 865 Query: 621 ADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYN 680 D I GF YA SG ++ I D+++ K+ E+I E++ EV I+ ++ G +T ERY Sbjct: 866 LDSIKDFGFHYATLSGLTISIRDVLVSPKREELIEESKGEVLRIESLYEEGYLTDNERYK 925 Query: 681 KVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQL 740 ++I IW +A +V++ + ++ +FN I+MM +SGARG+ Q++QL Sbjct: 926 EIIKIWESATAKVTEET-------------AKTYRKYTFNPIWMMIESGARGNIDQLKQL 972 Query: 741 AGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRL 800 AGMRGLMA P G IIE PIT+NF+ GL+ L++F STHG+RKG ADTAL+T+ +GYLTRRL Sbjct: 973 AGMRGLMADPSGKIIEVPITSNFKNGLSELEFFTSTHGSRKGSADTALRTSTAGYLTRRL 1032 Query: 801 VDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADIL 857 VDVAQ + +TE+DCGT +GI + E L D + GRV A+DVL P T +++ Sbjct: 1033 VDVAQSITITEEDCGTDKGIEARELWADDSKIENLSDFLFGRVLAKDVLDPETKEVI 1089 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 76/135 (56%), Positives = 102/135 (75%) Query: 20 IKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLK 79 IKI +ASP I S GEVKKPET+N+RT KPE+DGLFC +IFGPVKDYEC CGKYK K Sbjct: 14 IKIGIASPQSILEASNGEVKKPETLNHRTGKPEKDGLFCEKIFGPVKDYECACGKYKGKK 73 Query: 80 HRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVL 139 + G +CE+CGV+V + RR ++GHIELA+P +HIW+LKS PS + ++L++ ++D+E ++ Sbjct: 74 YEGTVCERCGVKVESKEARRRKIGHIELATPISHIWYLKSSPSILSIILNIGVKDLENII 133 Query: 140 YFESYVVIEGGMTNL 154 Y+ S VIE L Sbjct: 134 YYGSKRVIERAYLTL 148 Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 61/160 (38%), Positives = 90/160 (56%), Gaps = 13/160 (8%) Query: 879 AVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIG 938 ++ +RS ++C+++ G+CA CYG DL+ ++N+GEA+G+IAAQSIGEPGTQLTMRTFH G Sbjct: 1230 SIFIRSPLTCESENGLCAKCYGMDLSNYKLVNRGEAVGIIAAQSIGEPGTQLTMRTFHTG 1289 Query: 939 GAAS---------RAAAESSIQVKNKGSI-KLSNVKSVVNSSGKLVITSRNTELKLIDEF 988 G A+ RA + K KG + S K +V + + R LK+I E Sbjct: 1290 GIATTSDITQGLPRAEELFEARKKTKGPEGEFSKTKGIVRAIERDTENKRGRRLKIIIEN 1349 Query: 989 GRTK-ESYKVPYGAVLAKGDGEQVAGGE--TVANWDPHTM 1025 + ESY+ Y +G++V G+ T N P + Sbjct: 1350 SDGELESYEADYRTKAVVEEGDKVLAGQRLTTGNIKPRNI 1389 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 70/187 (37%), Positives = 111/187 (59%), Gaps = 15/187 (8%) Query: 1131 TKDITGGLPRVADLFEARRP-KEP-AILAEISGIV-SFGKETKGKR----RLVITPVDGS 1183 T DIT GLPR +LFEAR+ K P ++ GIV + ++T+ KR +++I DG Sbjct: 1294 TSDITQGLPRAEELFEARKKTKGPEGEFSKTKGIVRAIERDTENKRGRRLKIIIENSDGE 1353 Query: 1184 -DPYEEMIPKWRQLNVFE-GERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVY 1241 + YE +R V E G++V G ++ G P +IL+ GV + Y+++E++ +Y Sbjct: 1354 LESYE---ADYRTKAVVEEGDKVLAGQRLTTGNIKPRNILKELGVGPLANYLLSEIKKIY 1410 Query: 1242 RLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRE-LEANGKVGA 1300 QGV I+DKH E+I+RQM+ K I++ G +DF+ G+ V Y +V+ N E LE N + Sbjct: 1411 AEQGVDIHDKHFEIIIRQMINKVEIIDGGDTDFMPGDLVSYGKVQKINEEILEENSYI-- 1468 Query: 1301 TYSRDLL 1307 T +R+L+ Sbjct: 1469 TENRELV 1475 >UniRef50_Q9MUS6 DNA-directed RNA polymerase subunit beta' n=2 Tax=Viridiplantae RepID=RPOC1_MESVI Length = 668 Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust. Identities = 319/599 (53%), Positives = 422/599 (70%), Gaps = 62/599 (10%) Query: 13 KTEEFDAIKIALASPDMIRSWS---------FGEVKKPETINYRTFKPERDGLFCARIFG 63 K F+ I+I LASP+ I W GEV + ETINYRT KPE DGLFC RIFG Sbjct: 5 KLVHFEYIQINLASPERILQWGQRTLSNGEIVGEVTRSETINYRTLKPEMDGLFCERIFG 64 Query: 64 PVKDYECLCGKYKRLKHR-----GVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLK 118 PVKD+EC CG+YKR+++ ++CE+CGVEV ++ VRR RMGHI+LASP H+W+LK Sbjct: 65 PVKDWECHCGRYKRVRYNKNSEISIVCERCGVEVIESGVRRHRMGHIKLASPVTHVWYLK 124 Query: 119 SLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQY-------LDALEE 171 +PS I ++L MP +D+E ++Y+ + I N+ Q LTE ++ LD L Sbjct: 125 GIPSYISVILGMPRKDVENIVYYNNNDSI--SFKNIS--QFLTENRFFSNSTDILDDLLN 180 Query: 172 FGDEFDAKMGAEAIQALLKSMDLEQECEQLREEL------------------------NE 207 ++ + G EAI +LK+ DL+ +++RE+L N+ Sbjct: 181 IKEKEEEISGGEAIYKMLKNFDLKATAQKIREDLAENEAAWTQSSFFNGEDSDWVLDENQ 240 Query: 208 TNSET------------KRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPL 255 N + KR KL KR++++ F+ +G KPEWM+L++LPVLPP+LRP+V L Sbjct: 241 WNKKNQDWQIEEERRNKKRNKLIKRLRIINHFIATGAKPEWMVLSILPVLPPELRPMVQL 300 Query: 256 DGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRA 315 DGGRFATSDLNDLYRRVINRNNRL +L ++ AP+I+VR+EKRMLQE+VDAL+DNG+RG+A Sbjct: 301 DGGRFATSDLNDLYRRVINRNNRLAKLNNMLAPEIVVRSEKRMLQESVDALIDNGKRGKA 360 Query: 316 ITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALE 375 + G+NK PLKSL+D+IKGKQGRFRQNLLGKRVDYSGRSVI VGP L+LHQCGLPK+MA+E Sbjct: 361 LVGNNKIPLKSLSDIIKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKLHQCGLPKEMAIE 420 Query: 376 LFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQ 435 LF+PF+ L GLA IK AKK+++ + ++W+IL++VI+ HPVLLNRAPTLHRLGIQ Sbjct: 421 LFQPFVIHTLINEGLANNIKGAKKIIQNSDPILWEILNQVIQGHPVLLNRAPTLHRLGIQ 480 Query: 436 AFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPAN 495 AFEP+L+EG+AIQLHPLVC A+NADFDGDQMAVH+PL+LEAQ EAR LM++++N+LSPA Sbjct: 481 AFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHIPLSLEAQTEARLLMLASSNLLSPAT 540 Query: 496 GEPIIVPSQDVVLGLYYMTRDCVNAKG-EGMVLTGPKEAERLYRSGLASLHARVKVRIT 553 G PII PSQD+VLG YY+T + + +G + + ++ Y +LH V VR + Sbjct: 541 GLPIISPSQDMVLGCYYLTTEDIRLRGTKSHYFSSLEQVIMAYDQKKINLHTIVWVRFS 599 >UniRef50_B1L934 DNA-directed RNA polymerase subunit beta' n=8 Tax=Bacteria RepID=RPOC_THESQ Length = 1690 Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/778 (44%), Positives = 498/778 (64%), Gaps = 68/778 (8%) Query: 152 TNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNE-TNS 210 T L+ I+TE +Y L+ + ++ A GA+AI+ LL+++DLE ++ EL + +S Sbjct: 435 TGLKVGDIVTENEYEAYLQIYPEKIVADAGAQAIKKLLQNLDLEALQAEIEAELKKLPSS 494 Query: 211 ETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYR 270 +K KL +R+K+++ F++SGNKPEWM+L V+PV+PPDLRP++ ++GGRFAT+DLN+LYR Sbjct: 495 SSKAIKLRRRLKMVKDFLKSGNKPEWMVLEVVPVIPPDLRPMIQIEGGRFATTDLNELYR 554 Query: 271 RVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNG-----RRGR--AITGSNKRP 323 R+INRNNRLK+LL+L AP+II+RNEKRMLQEAVDAL+ NG +R R + N RP Sbjct: 555 RLINRNNRLKKLLELGAPEIILRNEKRMLQEAVDALIHNGSDSEGKRSRRAVLKDRNGRP 614 Query: 324 LKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYG 383 LKSL D++KGK+GRFR+NLLGKRVDYSGR+VI VGP L++HQCG+PKKMA+ELFKPF+ Sbjct: 615 LKSLTDLLKGKKGRFRRNLLGKRVDYSGRAVIVVGPNLKIHQCGIPKKMAMELFKPFVLA 674 Query: 384 KLELRGLA--TTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVL 441 KL G + T K K ++E+E W++L+EVI+ VLLNRAPTLHR+ IQAFEP L Sbjct: 675 KLLGEGSSSKTMRKVKKAIIEKEMPEAWEVLEEVIKGSVVLLNRAPTLHRMSIQAFEPKL 734 Query: 442 IEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIV 501 +EG AIQLHP+VC +NADFDGDQMAVHVPL+ AQ EAR LM+S NI+SPA+G+PI + Sbjct: 735 VEGNAIQLHPVVCPPFNADFDGDQMAVHVPLSAAAQAEARFLMLSRYNIISPAHGKPISL 794 Query: 502 PSQDVVLGLYYMTR-----DCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYE 556 P+QD+++G YY+T D + + + P+EA Y G LH + +++ Sbjct: 795 PTQDIIIGSYYLTTVGKEFDSLKEEDVKWKFSSPEEAMLAYHLGFIKLHTPILIKVV--- 851 Query: 557 KDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKP 616 NGE + +K TT+GR I I+P+ L N+ KK I+ ++ ++ G+ Sbjct: 852 --INGE---EKRIK-TTLGRVIFNGILPEDL--RDYNRIFDKKQINALVYETFKRHGIDR 903 Query: 617 TVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAG 676 D I GF YA SG ++ + D+ IP ++ EI+ + +V I+E ++ G +T Sbjct: 904 AADLLDDIKDIGFHYATVSGLTLSLKDLKIPPERDEILRKTWEKVRIIEENYEKGFLTEE 963 Query: 677 ERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQ 736 +R +++I +W + + ++K L + FN IYMM +SGARG+ Q Sbjct: 964 QRKSEIIRLWMSVTEEITKLTSKTLAED-------------PFNPIYMMVNSGARGNIDQ 1010 Query: 737 IRQLAGMRGLMAKP-------------------DGSIIETPITANFREGLNVLQYFISTH 777 ++QLAG+RGLM K + + P+ N REG+++LQ+FIST+ Sbjct: 1011 VKQLAGIRGLMIKAYDPRSREIKSKIFKGQAIHEALTFDYPVDKNLREGVDILQFFISTY 1070 Query: 778 GARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRD 837 GARKG DTA+ T+ +GYLTRRLVDVAQ + V+E DCGTHEGI +I+ G V E + + Sbjct: 1071 GARKGQVDTAMNTSFAGYLTRRLVDVAQSVTVSEPDCGTHEGIRAMDLIKEGTVVEKMNE 1130 Query: 838 RVLGRVTAEDVLKPGTADIL--------VPRNTLLHEQWCDLLE--ENSVDAVKVRSV 885 + GRV A DVL P T ++L RNT+L + + L + VD V+ + Sbjct: 1131 FLFGRVLARDVLDPETKEVLKNPETGKEYTRNTMLTDDDANFLASYKKMVDVVRYEEI 1188 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 87/130 (66%), Positives = 106/130 (81%) Query: 19 AIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRL 78 AI+I +ASP++IRSWS GEVKKPETINYRTFKPERDGLFC RIFGPVKDYEC CGKYK Sbjct: 12 AIQIKIASPEVIRSWSGGEVKKPETINYRTFKPERDGLFCERIFGPVKDYECACGKYKGK 71 Query: 79 KHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERV 138 K+ G +CE+CGV V + RR+RMGHIELA+P HIW+L+S+PS +G LL+M D+E + Sbjct: 72 KYEGTVCERCGVRVESREARRKRMGHIELAAPAVHIWYLESIPSVLGTLLNMSTSDLENI 131 Query: 139 LYFESYVVIE 148 +Y+ S VIE Sbjct: 132 IYYGSRRVIE 141 Score = 106 bits (264), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 74/211 (35%), Positives = 110/211 (52%), Gaps = 31/211 (14%) Query: 839 VLGRVTAED---VLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVR------SVVSCD 889 V+G V AE+ K G +LV + +++E +LEEN ++ V VR S ++C+ Sbjct: 1238 VVGTVYAEEEPLYDKKGERQLLVYQE-VINEIVAKMLEENGIEKVPVRPDIIVRSPLTCE 1296 Query: 890 TDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESS 949 +++GVCA CYG DL+ I+N GEA+G++AAQSIGEPGTQLTMRTFH+GG + S Sbjct: 1297 SEYGVCAACYGMDLSNHKIVNVGEAVGIVAAQSIGEPGTQLTMRTFHVGGVMGASDIVSG 1356 Query: 950 IQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLI-----------DEFGRTK------ 992 + K + ++ + K + +E L DE GRT Sbjct: 1357 LTTVEKTFEPYAFLREEKSGGKKEIRKYYGSEAILCEVDGFVKDIATDESGRTVIYIEDY 1416 Query: 993 ----ESYKVPYGAVLAKGDGEQVAGGETVAN 1019 +YKVP A + G++V GET+ + Sbjct: 1417 AGNIHAYKVPKRAKVRVEKGQKVLRGETLTS 1447 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 38/61 (62%), Positives = 46/61 (75%) Query: 1302 YSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGT 1361 Y R LL + KA+L ++SAA+F+ET VLT AA+ GK D L GLKENVIVG+LIPAGT Sbjct: 1608 YKRRLLSLKKAALNYPGWLSAAAFEETAWVLTAAAIEGKVDPLIGLKENVIVGQLIPAGT 1667 Query: 1362 G 1362 G Sbjct: 1668 G 1668 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 60/189 (31%), Positives = 89/189 (47%), Gaps = 21/189 (11%) Query: 1130 GTKDITGGLPRVADLFEA----RRPKE------------PAILAEISGIVSFGKETKGKR 1173 G DI GL V FE R K AIL E+ G V + R Sbjct: 1349 GASDIVSGLTTVEKTFEPYAFLREEKSGGKKEIRKYYGSEAILCEVDGFVKDIATDESGR 1408 Query: 1174 RLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRL---RGVHAVT 1230 ++ + + +PK ++ V +G++V RG+ ++ G +L L +GV Sbjct: 1409 TVIYIEDYAGNIHAYKVPKRAKVRVEKGQKVLRGETLTSGAIVWWKLLELESEKGVMTAM 1468 Query: 1231 RYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANR 1290 ++ +++ Y QGV I+DKH E+I +QML ATIV+ G SD+L + V +K NR Sbjct: 1469 N-LLKIIKNAYVQQGVSIHDKHFEIIFKQMLSMATIVDPGDSDYLPDQLVPLVDIKRFNR 1527 Query: 1291 E-LEANGKV 1298 E LE N KV Sbjct: 1528 EILEGNAKV 1536 >UniRef50_B1AIH6 DNA-directed RNA polymerase subunit beta' n=15 Tax=Ureaplasma RepID=RPOC_UREP2 Length = 1305 Score = 620 bits (1600), Expect = e-176, Method: Compositional matrix adjust. Identities = 340/827 (41%), Positives = 521/827 (62%), Gaps = 77/827 (9%) Query: 180 MGAEAIQALLKSMDLEQECEQLREEL-NETNS-ETKRKKLTKRIKLLEAFVQSGNKPEWM 237 +GAEAI+ LL+ ++LE+E E++++ + N N+ + K K+L +R++ + SG+KPEWM Sbjct: 236 IGAEAIRELLEKLNLEEEHEKIKQAIQNSPNAYDQKTKRLLRRLECVRWIKDSGSKPEWM 295 Query: 238 ILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKR 297 ++T +PV P + RP++ LDGGRF TSD N+ YR++I RN RLK++ AP+I++ NEKR Sbjct: 296 VMTRIPVTPSETRPIISLDGGRFTTSDTNNFYRKIIIRNERLKQMQATDAPEILLDNEKR 355 Query: 298 MLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITV 357 +LQEAVD+L DN R + + G +KRPLKSL++ +KGKQG FRQNLLGKRVDYSGRSVI V Sbjct: 356 LLQEAVDSLFDNNSRKKPVVGKDKRPLKSLSNHLKGKQGLFRQNLLGKRVDYSGRSVIVV 415 Query: 358 GPYLRLHQCGLPKKMALELFKPFIYGKL---------ELRGLATTIKAAKKMVEREEAVV 408 GP L++++ G+P M L+LF+P+I +L E++ + IK A++ + ++ + Sbjct: 416 GPELKMYEVGIPALMILKLFRPYIISELIRKRDELGNEIQPICANIKLAEQKILAQDNEI 475 Query: 409 WDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAV 468 W ++++VI++ PV+LNRAPTLHRLGIQAFEP +++GKAI+LHPLV A+NADFDGDQMAV Sbjct: 476 WPVVEKVIKQRPVILNRAPTLHRLGIQAFEPKMVDGKAIRLHPLVTTAFNADFDGDQMAV 535 Query: 469 HVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLT 528 H+PL+ EA EAR++++++ +IL P +G+PII P+QD++LG+YY+T++ E M+ Sbjct: 536 HIPLSKEAVAEARSILLASWHILGPKDGKPIITPTQDMILGIYYLTKEKFPQVIEEMMAK 595 Query: 529 GPKEAE-------RLYRSGLASLHA-RVK-VRITEY----EKDANGELVAKTSLKDTTVG 575 P +A ++ + ++ A ++K +RI + K N + +K + TTVG Sbjct: 596 DPTQARVEFINNFHIFSTQDEAIRAYKLKTIRINDVIGITTKAFNNKTFSKEGILVTTVG 655 Query: 576 RAILWMIVPKGLPY--------------------SIVN--------QALGKKAISKMLNT 607 + I P PY SI++ + L KK +S +++ Sbjct: 656 KIIFNQAFPVNFPYINDVKNLYGENQFEIIGMHESILDYLKAYNLKEPLTKKTLSTVIDY 715 Query: 608 CYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQ 667 Y++ ++ D+I GF Y+ S S+ D+ ++K+E E + V++++E Sbjct: 716 LYKVSEIEVVPQTMDKIKALGFKYSMISATSISAFDIPSYDQKYEYFKETDELVSKLREF 775 Query: 668 FQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMAD 727 + G +T ERY KV+ W+ D+V+ + E +IN + ++ N I +MA Sbjct: 776 YLDGKLTDDERYTKVVQAWSQTKDKVTHDI------EKLINSNEYKD-----NPIVIMAK 824 Query: 728 SGARGSAAQIRQLAGMRGLMAKP--------DGSI---IETPITANFREGLNVLQYFIST 776 SGARG+ + QLAGMRGLM+K +G I IE PI +F EGL+V +YF S+ Sbjct: 825 SGARGNTSNFTQLAGMRGLMSKSYNYDQKNNNGVIKDTIEIPIKHSFIEGLSVSEYFNSS 884 Query: 777 HGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVK--EP 834 GARKG+ DTA+KTA SGY+TR+LVD Q +V+ + DCGT EGI++ + D E Sbjct: 885 FGARKGMTDTAMKTAKSGYMTRKLVDSTQAVVIKDHDCGTKEGIIVREIRNTKDNTSIES 944 Query: 835 LRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGV 894 L+DR++GR + + +++ + L+ + ++++ + + V+VRS + C + +GV Sbjct: 945 LKDRIVGRYSINTIYDTKNK-LIIESDKLITSEIANIIQNSGIREVEVRSPLHCASLYGV 1003 Query: 895 CAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAA 941 C C+G DL+ +I G AIGVIAAQSIGEPGTQLTMRTFH GG A Sbjct: 1004 CQKCFGLDLSTNKLIETGTAIGVIAAQSIGEPGTQLTMRTFHTGGVA 1050 Score = 192 bits (488), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 81/151 (53%), Positives = 117/151 (77%), Gaps = 2/151 (1%) Query: 19 AIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRL 78 ++ I++ASP+ I +WS GE+ KPETINY++ KPE +GLF IFGP KDYEC CGKY+++ Sbjct: 8 SLTISIASPEQILNWSKGEITKPETINYKSLKPEPNGLFDESIFGPSKDYECYCGKYRKV 67 Query: 79 KHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL--PSRIGLLLDMPLRDIE 136 KH+G ICE+C VE+T++ VRRERMGHIELA+P AHIWF K L PS+I LLLD+ ++++ Sbjct: 68 KHKGKICERCHVEITESIVRRERMGHIELAAPVAHIWFTKELPSPSKISLLLDITYKEVD 127 Query: 137 RVLYFESYVVIEGGMTNLERQQILTEEQYLD 167 +V+YF +Y+V++ G + + I +++ LD Sbjct: 128 QVVYFVNYIVLDEGNNVYDGKSIFNKKEVLD 158 Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 84/237 (35%), Positives = 131/237 (55%), Gaps = 3/237 (1%) Query: 1129 GGTKDITGGLPRVADLFEARRPKE--PAILAEISGIVS-FGKETKGKRRLVITPVDGSDP 1185 G +IT G R+ LF+ +P+E A+++++ G V K++ V+ + + Sbjct: 1050 AGDTNITQGFERIKQLFDCIQPQENEKAVISQVKGTVERIEKDSNTNGYNVVIKYNKDNY 1109 Query: 1186 YEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQG 1245 L V G+ + G I++G +D+L+ G+ V YI+ EVQ VYR+QG Sbjct: 1110 VNYPTRSNAVLRVKTGDEIIAGQKITEGSIDVNDLLKYAGIENVRHYIIKEVQKVYRMQG 1169 Query: 1246 VKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRD 1305 ++I+DK+IEVI+ Q+ K TI N G S GE + + + + N K + Sbjct: 1170 IEISDKYIEVIISQLTNKITITNPGDSGLFVGETISINEFTEVAQNMLVNKKKPPSAINQ 1229 Query: 1306 LLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362 + G+ A + SF+SAASFQ+T ++LT+AA ++D L GLKENVI+G LIPAGTG Sbjct: 1230 VFGLDHAPSKSGSFLSAASFQDTKKILTDAAARSQKDMLIGLKENVILGNLIPAGTG 1286 >UniRef50_C6UN03 DNA-directed RNA polymerase n=1 Tax=Candidatus Hodgkinia cicadicola Dsem RepID=C6UN03_HODCD Length = 1376 Score = 616 bits (1589), Expect = e-174, Method: Compositional matrix adjust. Identities = 404/1080 (37%), Positives = 582/1080 (53%), Gaps = 72/1080 (6%) Query: 13 KTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLC 72 +E ++ ++LASP+ + SWS+GE++ + ++ T KP GLFC +IFG + ECLC Sbjct: 30 SSEAVRSVSLSLASPETVLSWSYGEIEHASSYDFATGKPVEGGLFCPKIFGSSNEGECLC 89 Query: 73 GKYKRLKHRGVICEKCGVEVT-QTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMP 131 + ++C CGVE+ + R R HI+LA+P H WF S + LL P Sbjct: 90 DEPT--ADDEMVCAVCGVEMAVGWRCARSRFAHIDLAAPVVHAWFHGSALPILVLLTGQP 147 Query: 132 LRDIERVLYFESYVV--IEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALL 189 + +++ +++VV GG+ +E Q + T DAL + + A + + L Sbjct: 148 TATLLKLISCDAHVVRSTTGGL--IEGQIVDT-----DALRK---AWSASSWRQLVSGGL 197 Query: 190 KSMDLEQECEQLREEL--------NETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTV 241 DL +C R EL + KL K+++L+E FV S KP W L V Sbjct: 198 AVRDLLAKC---RPELVKRALALELAAAPPSAAAKLRKKLQLIEGFVASKAKPTWAALEV 254 Query: 242 LPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLD-LAAPDIIVRNEK---- 296 LPVLP LRP+V L R A+SDLN+LY R+++ N + + D L D + +E Sbjct: 255 LPVLPASLRPMVMLQADRCASSDLNELYSRIVSANRVVAAMYDALWRGDHVACDEVLDGL 314 Query: 297 RMLQEAVDALLDNGRRGRA---ITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRS 353 R LQ +VDAL+DN R + TG + LKSL +++KGK+GRFRQ LLG+RVDYSGRS Sbjct: 315 RALQRSVDALIDNTSRSASEVRPTGRSSVALKSLTELLKGKRGRFRQTLLGRRVDYSGRS 374 Query: 354 VITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILD 413 VI GP L+L++CGLP+ MA ELFKPF+ KL L + K + + L Sbjct: 375 VIAPGPELKLYECGLPRAMAAELFKPFVRAKLMLTCGVRSASKLKLLTASRPELEARALC 434 Query: 414 EVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLT 473 EV PV+LNRAPTLH+L +QAF L + K I+LHPLVCA +NADFDGDQMAVHVPL+ Sbjct: 435 EVAEFWPVVLNRAPTLHKLSMQAFRARLTDSKVIRLHPLVCAGFNADFDGDQMAVHVPLS 494 Query: 474 LEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEA 533 EA+ EA ALM+ST N+L PA+G IVP+QD+VLGLYYMT V AK + + Sbjct: 495 YEARAEALALMLSTRNVLHPAHGMLAIVPTQDMVLGLYYMT--VVAAKRADVRFASYADV 552 Query: 534 ERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPK--GLPYSI 591 + LH RV+ + DA G++V ++T GR ++ +VP+ G Y+ Sbjct: 553 NAALMARAVGLHTRVEFCAS---TDA-GQVVI-----ESTPGRLLVNELVPQACGFLYTT 603 Query: 592 VNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKH 651 AL K I K+ + G + V+F +++M GF +A SG S+ D+ K Sbjct: 604 SMPALSKSEIIKLTEDVLEVCGKREAVVFCEELMLLGFKHATLSGTSLACADLKACGYKQ 663 Query: 652 EIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAM-MDNLQTETVINRD 710 + A VA + +G A R +WA A +V A+ +D V RD Sbjct: 664 RALQSARRAVARLAPG-AAGFPNARRRRLAFAKVWADAVQKVHAAVDLD------VARRD 716 Query: 711 GQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVL 770 E Q S+ +M SGARG+ AQ+RQL G RG + G+ P+ A++R+GL+ Sbjct: 717 ---ELQ---TSVQVMLASGARGTPAQLRQLVGARGEVVGFGGTPCLMPVLASYRDGLSTA 770 Query: 771 QYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGD 830 ++F ST AR+GL DT LKTA+SGYLTRRL++VA++ VTE DCG EG+ + + Sbjct: 771 EFFYSTFAARRGLVDTVLKTASSGYLTRRLIEVAREYTVTELDCGEGEGLDVDVTTDLAR 830 Query: 831 VKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDT 890 K L LGR+ A+ V++ G +L N ++ + LL +V++RS ++C Sbjct: 831 AKHKL----LGRLVAKRVVESGR--LLADVNEIITRRCVGLLAGAGCASVRIRSPLTCLA 884 Query: 891 DFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRA----AA 946 + GVCA CYG +L+ G + GEA+GV+AAQSIGEPGTQLT+RTFH G A R A Sbjct: 885 ESGVCAACYGVNLSTGKMAKLGEAVGVLAAQSIGEPGTQLTLRTFHGAGQAERVQSAQAN 944 Query: 947 ESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKG 1006 + + G I + N+ V +G +V+ + ++ E E + GA + Sbjct: 945 AAHVVAACDGVISIQNLACVRTLAGDVVVAGSRAVISVVSERAPPAE-HVACRGARVLVA 1003 Query: 1007 DGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAE 1066 DGE+V G + ++ G + ++ G RQ D TGL+ + SA+ Sbjct: 1004 DGERVHRGRVLCVLYATDERYVSLAFGSLHLEGVLCGVNAKRQLDAETGLTRFDLTASAQ 1063 Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 55/161 (34%), Positives = 84/161 (52%) Query: 1203 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR 1262 R+ERGD I+ G L G V++VQ ++ QGV +N KHIEV++RQM Sbjct: 1187 RLERGDAIAPGDVDMSAFASLHGFDRFANLFVDKVQQLFDYQGVSLNSKHIEVVLRQMTD 1246 Query: 1263 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISA 1322 A + AGS+ GE V + + N A G V AT R ++ + A S +S+ Sbjct: 1247 TAVVTGAGSTALKPGEVVAWRLLAETNALALAGGGVAATGLRRVVSVADACANHASLLSS 1306 Query: 1323 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGY 1363 SF + L E ++G + + +K+++I+GRL P GTG+ Sbjct: 1307 ISFYGAVKTLAELVISGGKHSVSAIKDHIIMGRLAPVGTGF 1347 >UniRef50_B5Y993 DNA-directed RNA polymerase n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y993_COPPD Length = 2037 Score = 585 bits (1507), Expect = e-165, Method: Compositional matrix adjust. Identities = 321/721 (44%), Positives = 454/721 (62%), Gaps = 42/721 (5%) Query: 181 GAEAIQALLK---SMD-LEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEW 236 G EAI+ LL+ S D L+ + L E+L E + + K++KLTKR++++ F++S P W Sbjct: 694 GGEAIKELLEKNYSPDKLQDWVDYLVEQLEEASGQ-KKQKLTKRLQVVNGFLRSKTNPSW 752 Query: 237 MILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEK 296 M+L VLPVLPPDLRPL+ R +SDLN+LYRR+INRN RLKRL + APD+I+RNE Sbjct: 753 MVLEVLPVLPPDLRPLIFDKNERAKSSDLNELYRRIINRNLRLKRLREQKAPDLIIRNEM 812 Query: 297 RMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIT 356 R+LQEAV+AL+DN R+ + + S R LKSL D + GKQGRFRQNLLGKRVDYSGRSVI Sbjct: 813 RLLQEAVEALIDNSRKDKPVKDSRGRQLKSLTDKLSGKQGRFRQNLLGKRVDYSGRSVIV 872 Query: 357 VGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVI 416 +GP L+L+Q G+P+ MA ELFKP + G+L+ R +A+T K AKKM+E + +W +L +++ Sbjct: 873 IGPDLKLNQTGIPRIMAAELFKPMLIGELQRREIASTAKQAKKMIESYDPRIWPVLADIV 932 Query: 417 REHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEA 476 + + VLLNRAPTLHR IQAFEPVL++ KAI + P++C +NADFDGDQMAVHVPL+ +A Sbjct: 933 KGYYVLLNRAPTLHRPSIQAFEPVLVDSKAISVPPMICPPFNADFDGDQMAVHVPLSNQA 992 Query: 477 QLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCV-NAKGEGMVLTGPKEAER 535 EAR LM S NILSPA+GEP+ P+QD+V+G Y++T D + KG+G + E E Sbjct: 993 LAEARFLMSSHLNILSPAHGEPLAAPTQDLVIGPYFLTADIEGDFKGDGTIFYSAHEVEM 1052 Query: 536 LYRSGLASLHARV-KVRITEYEKDANG--ELVAKTSLKDTTVGRAILWMIVP-------- 584 LHA + V + + + G + + T +TTVGR I + Sbjct: 1053 ALEDKKVDLHAHIWYVPLLKGDGSVQGTSQGIDTTKKGNTTVGRVIFNHFINQRLAENGL 1112 Query: 585 KGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDM 644 + LP++ N + KK + +N LGL ++ D I GF YA SG ++ D+ Sbjct: 1113 QALPFA--NDTMTKKVLYSYINDAIDRLGLSDSIYVLDAIKELGFKYATFSGLTISALDL 1170 Query: 645 VIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTE 704 + K +++ EA ++ I++++ G +T ERY K+++IW +RV+ ++ D + E Sbjct: 1171 SVVPSKDKLVEEAREKIERIEQEYNFGRLTVEERYEKIVNIWRDVVERVTDSLTDYFK-E 1229 Query: 705 TVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFR 764 T + +YMM SGARG+ Q+RQL G+RGLMA P G IIE PI + Sbjct: 1230 T--------------DHLYMMFTSGARGNKDQVRQLVGLRGLMADPTGKIIEYPIIDSLL 1275 Query: 765 EGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTP 824 EGL + +YF+STHGARKG ADTALKTA++GYLTRRLVDV Q + +TEDD H + + P Sbjct: 1276 EGLTIQEYFVSTHGARKGQADTALKTADAGYLTRRLVDVVQSVTITEDD---HSVVSVGP 1332 Query: 825 VIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRS 884 E + ++GR EDV PG + +V R ++ + L+ E ++ + R Sbjct: 1333 -----KTFENVAAALVGRFAEEDVTLPGFDEPVVRRGQVIGVEEAQLIAEAGIEILVRRD 1387 Query: 885 V 885 + Sbjct: 1388 L 1388 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 85/151 (56%), Positives = 113/151 (74%) Query: 16 EFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKY 75 +FDA+++ LASPD IR+ S GEVKK ET+NYRT +PE DGLFC RIFGP +DYEC CGKY Sbjct: 2 DFDALRVRLASPDEIRAMSHGEVKKSETVNYRTNRPEPDGLFCERIFGPTRDYECACGKY 61 Query: 76 KRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDI 135 K K+ G +CE+CGVEVT++ VRRERMGHIEL +P H WF ++ SR+G ++DM +D+ Sbjct: 62 KGRKYEGQVCERCGVEVTRSSVRRERMGHIELGTPIVHPWFFRNAQSRLGFMVDMKQKDL 121 Query: 136 ERVLYFESYVVIEGGMTNLERQQILTEEQYL 166 ERV+Y+ S + + G L R ++T E+ L Sbjct: 122 ERVIYYTSNLATDTGPDILPRLTVMTSEKAL 152 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 77/197 (39%), Positives = 114/197 (57%), Gaps = 18/197 (9%) Query: 1173 RRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRY 1232 R+L I P D Y + P +R ++ D EA +LR G +A Y Sbjct: 1854 RKLRIRPDDMGTKY--LFPGYR--------------LVFDSIEASL-LLRAFGKNAAADY 1896 Query: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSS-DFLEGEQVEYSRVKIANRE 1291 ++ E++ VY Q V+INDKH E+++RQM K I +G S + L G+ VE++ + R Sbjct: 1897 LIGEIKSVYASQKVEINDKHFEIVLRQMFSKVVIDESGDSVEMLPGDVVEWTDYEQEVRY 1956 Query: 1292 LEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 GK + +G+TK S +++S+++AASFQET +VL +AA+AGK D+L+GLKENV Sbjct: 1957 WTLQGKKAPRGRQLCMGVTKVSKSSKSWLAAASFQETPQVLVDAAIAGKVDKLKGLKENV 2016 Query: 1352 IVGRLIPAGTGYAYHQD 1368 I+ R IPAGTG +D Sbjct: 2017 IIARRIPAGTGIYKEED 2033 Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 58/138 (42%), Positives = 87/138 (63%), Gaps = 6/138 (4%) Query: 805 QDLVVTEDDCGTHEGIMMTPV-IEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTL 863 +DLVV + EG+++ + G V L R+ GR AED++ P T +++V Sbjct: 1444 EDLVVKRE-----EGLLVRDLEATDGSVIAELGSRIWGRFAAEDIVDPNTGEVIVRAGQE 1498 Query: 864 LHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSI 923 + Q ++ V +V++ S ++C ++ GVC CYGRDL+R ++ KGE++GV+AAQSI Sbjct: 1499 ITAQDAQRIDRADVKSVRIHSPITCLSEDGVCVTCYGRDLSRRRLVEKGESVGVVAAQSI 1558 Query: 924 GEPGTQLTMRTFHIGGAA 941 GEPGTQLT+RTFH GG A Sbjct: 1559 GEPGTQLTLRTFHTGGVA 1576 >UniRef50_Q9TL05 DNA-directed RNA polymerase subunit beta' n=1 Tax=Nephroselmis olivacea RepID=RPOC1_NEPOL Length = 863 Score = 580 bits (1495), Expect = e-163, Method: Compositional matrix adjust. Identities = 312/696 (44%), Positives = 416/696 (59%), Gaps = 113/696 (16%) Query: 14 TEEFDAIKIALASPDMIRSW---------SFGEVKKPETINYRTFKPERDGLFCARIFGP 64 T + +K+ +ASP IRSW G + K ETINYRT+KPE DGLFC R FGP Sbjct: 94 TRDLRFLKLRIASPTRIRSWGTHKLPNGKQVGRITKAETINYRTYKPEMDGLFCERAFGP 153 Query: 65 VKDYECLCGKYKRLKHR--GV----ICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLK 118 VKD+EC CG+ K + G+ +C CGVE+ +K+RR RMG+IEL P HIW+LK Sbjct: 154 VKDWECHCGRTKGQERNKDGIPIPRVCTHCGVELRDSKIRRHRMGYIELVYPVVHIWYLK 213 Query: 119 SLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMT--------------------NLERQQ 158 S+PS +G+LLD P R++E + Y +Y + M E Sbjct: 214 SIPSYLGVLLDKPRRELEAITYCTNYASSQDSMAFSASLLFPTTGSFRQSKDSMKWEYLN 273 Query: 159 ILTEEQYL-------DALEEFG----------------DEFDAKMGAEAIQALLKSMDLE 195 E YL AL +G D +GA+AI L++++L Sbjct: 274 WFHIETYLGLKEATNSALVHYGKRIQDSPIEVGLPLSEDPRQFSIGAQAIACQLRALNLR 333 Query: 196 QECEQLREELN------------ETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLP 243 L +L E +R KL +R++L+ F+Q+ +PEWM++ LP Sbjct: 334 SVSRLLSRDLYIIDARETRFGALEEEEMKRRSKLIRRLQLIHYFMQTKAQPEWMVIKALP 393 Query: 244 VLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAV 303 VLPPDLRP+V L+GGRFAT+DLNDLYRRV+NRNNR +L + AP+ ++R+EKR+LQEAV Sbjct: 394 VLPPDLRPIVQLEGGRFATTDLNDLYRRVLNRNNRFMKLHKMVAPETLIRSEKRLLQEAV 453 Query: 304 DALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRL 363 D L DNG+RG+ + S+ RPLKSLAD +KGKQGRFRQNLLGKRVDYSGRSVI VGP LRL Sbjct: 454 DGLFDNGKRGKPVLNSSNRPLKSLADALKGKQGRFRQNLLGKRVDYSGRSVIVVGPKLRL 513 Query: 364 HQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVERE-----------EAVVWDIL 412 HQCGLPK+MALELF+P + L R +A I+ AKK++ +AVVWD L Sbjct: 514 HQCGLPKEMALELFQPLVIRLLLKRKVAPNIRYAKKLMHHAVARGPENPTIIDAVVWDTL 573 Query: 413 DEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPL 472 V+ +P+LLNRAPTLHRLGIQAFEPVLI G+AIQLHPLVC +NADFDGDQM VH+PL Sbjct: 574 AAVVEGYPILLNRAPTLHRLGIQAFEPVLINGRAIQLHPLVCTGFNADFDGDQMGVHIPL 633 Query: 473 TLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKG-EGMVLTGPK 531 + EA+ EA+ LM++++N+LSPA G+PI+VPSQD+VLG YY+T + + EG+ +G Sbjct: 634 SAEARAEAKLLMLASHNLLSPATGQPIVVPSQDMVLGWYYLTTENPWIESTEGLYFSGLS 693 Query: 532 EAERLYRSGLASLHARVKVRI---------TEYEK-------DANG---ELVAKTSLK-- 570 + E Y G LH+ + VR E+E DANG + ++ L+ Sbjct: 694 DVEHAYHQGQIHLHSIIWVRWGGESEGSLGDEFEDNPLEIRIDANGHSWHIYSQYQLRYD 753 Query: 571 ----------DTTVGRAILWMIVPKGLPYSIVNQAL 596 TT GR + +V + + +S+ +Q + Sbjct: 754 DEGDLISQFIRTTTGRVVFNQLVHRHIEWSLHDQVM 789 >UniRef50_B3PM77 DNA-directed RNA polymerase subunit beta' n=2 Tax=Mycoplasma RepID=RPOC_MYCA5 Length = 1464 Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust. Identities = 301/670 (44%), Positives = 418/670 (62%), Gaps = 85/670 (12%) Query: 10 AQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYE 69 A +++ I +ALA+PD + SWS GEV KPETINY+++KPER GLF IFGP+ DY Sbjct: 8 ATLDSDKIAKISLALATPDDVESWSHGEVTKPETINYKSYKPERGGLFDEIIFGPMIDYR 67 Query: 70 C-LCG-KYKRLKH-----RGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPS 122 C +CG KYK++ + +C++ VE+ RR MGHI+L SP H WF K S Sbjct: 68 CPICGHKYKKINEGSFCSKTELCKQEKVEILPKISRRNHMGHIKLNSPVVHFWFFKVDHS 127 Query: 123 RIGLLLDM---------PLR--DIERVLYFESYVVIE-GGMTNLERQQILTEEQ----YL 166 I LLD+ P+R D+E ++Y++S++V+E GG+ L + I+ Y Sbjct: 128 IIFKLLDLTVAGRPNTEPVRRIDLENLIYYKSHIVLESGGIKALPKNLIIDINVAAVIYK 187 Query: 167 DALEE---------------------------------FGDEF-----------DAKMG- 181 DALEE +G +F +AK+G Sbjct: 188 DALEELITRFEPGTEDYEDIRETLDNLIEKASSKIGQDYGIDFYELNEVIEHYSEAKIGT 247 Query: 182 -AEAIQALLKSMDLEQECEQLREELNETNSE-------------TKRKKLTKRIKLLEAF 227 A+AI+ LLK++DL++E E + ++ + N E R+KL KR++++ AF Sbjct: 248 GAQAIEYLLKNLDLQKEKELVSAKIKKINDEEIMSGAKIASTSRQTREKLYKRLQVINAF 307 Query: 228 VQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAA 287 ++S +P M++ LPV+P DLRPL+ LDGGR +TSD+N+LYRRVI RNNRLK+ + A Sbjct: 308 IESKQEPTSMLIYNLPVIPADLRPLIQLDGGRHSTSDINELYRRVIIRNNRLKQWQEKDA 367 Query: 288 PDIIVRNEKRMLQEAVDALLDNGRRG-RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKR 346 P ++++NE RM+QEAVDAL+DN RR + + RP KS++D + GK+GRFRQNLLGKR Sbjct: 368 PTLVIQNELRMIQEAVDALIDNARRSPNPVLSKDNRPFKSISDALTGKKGRFRQNLLGKR 427 Query: 347 VDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEA 406 VDYSGRSVI VGP L++HQCG+P++MA +LF+P+I +L + +ATTIK AKKM+E + Sbjct: 428 VDYSGRSVIVVGPNLKMHQCGIPREMAAKLFEPWIIHRLIEKEVATTIKNAKKMLEDQNP 487 Query: 407 VVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQM 466 V+W + EVI+ VLLNRAPTLHRL IQAFEPVL+ GKAI+LHPLVC +NADFDGDQM Sbjct: 488 VIWPHIAEVIKGRLVLLNRAPTLHRLSIQAFEPVLVRGKAIRLHPLVCTPFNADFDGDQM 547 Query: 467 AVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMV 526 AVHVP++ A LE+R LM++ NIL +GEPII PSQD++LG+YY+T + A GEG + Sbjct: 548 AVHVPISERALLESRELMLANKNILGTKDGEPIINPSQDMILGIYYLTIEEPGALGEGRI 607 Query: 527 LTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKD--TTVGRAILWMIVP 584 + R Y + SLHARV + I E + ++ S + +TVG+ I I P Sbjct: 608 FDNYEHMIRAYEAKKVSLHARVALPIEEVKNSKIKAFASRESQRYIISTVGKFIFNNIFP 667 Query: 585 KGLPYSIVNQ 594 K P+ N+ Sbjct: 668 KSFPFIFDNK 677 Score = 255 bits (652), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 134/335 (40%), Positives = 199/335 (59%), Gaps = 28/335 (8%) Query: 622 DQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNK 681 D I GF Y++ SG + I D++ +KK E I+E +A +A++++ + GL++ +RY+ Sbjct: 830 DDIKDLGFKYSSLSGITFAISDILETDKKPEYIAEGDAYIAQLKQYYNDGLISDDDRYSL 889 Query: 682 VIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLA 741 I W +V + Q K+ N I M +SGARG+ + QLA Sbjct: 890 TIKKWTDIKAKVQGELQ-------------QIIKENPRNPIITMINSGARGNISNYVQLA 936 Query: 742 GMRGLMAKPDGSI-------------IETPITANFREGLNVLQYFISTHGARKGLADTAL 788 GMRGLMA S +E P+ ++F EGL +++ STHG RKG DTAL Sbjct: 937 GMRGLMANNTKSTRADVKNERVVRSTVEIPVKSSFIEGLTAFEFYSSTHGTRKGATDTAL 996 Query: 789 KTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIE--GGDVKEPLRDRVLGRVTAE 846 TA SGYLTRRLVDVAQ++VV +++CG+ G ++ +++ G + PL++R++GR + Sbjct: 997 NTAKSGYLTRRLVDVAQNIVVRKENCGSDYGHIVRDIVDTKNGQIIVPLKERIIGRYANK 1056 Query: 847 DVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARG 906 ++ T L RNTL+ ++ + + V V++RSV+ C+T GVC C+G+DLA Sbjct: 1057 PIIGEKTKQELAKRNTLITDKLAQKIIDEGVKEVEIRSVLGCNTKNGVCKMCFGKDLATN 1116 Query: 907 HIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAA 941 ++N GEA+G+IAAQSIGEPGTQLTMR FH GG A Sbjct: 1117 RVVNIGEAVGIIAAQSIGEPGTQLTMRVFHTGGVA 1151 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 86/243 (35%), Positives = 137/243 (56%), Gaps = 10/243 (4%) Query: 1129 GGTKDITGGLPRVADLFEARRPK--EPAILAEISG-IVSFGKETKGKRRLVITPVDGSDP 1185 G +DITGG PR+ +L +A PA+++ G IV E K ++T + + Sbjct: 1151 AGAEDITGGFPRLIELIDAHEQPWGRPAVISPYEGEIVEDLVEDKNVNSHLLT-IKVVNS 1209 Query: 1186 YEEMIPK------WRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQD 1239 +E + K ++L V G+ V+ G +S+GP ++L L V Y++ E+Q Sbjct: 1210 KKETVNKKVHVYTTKKLRVKVGDHVKVGQKLSEGPVIVKELLELTDTITVQNYLLKEIQK 1269 Query: 1240 VYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVG 1299 +YR+QG+ I+DK+IE+I+RQM+ K I + G S F G V+ + N L + K Sbjct: 1270 IYRIQGIAISDKYIEIIIRQMMSKIVIHDPGDSKFFAGAIVDIFDYQEENATLLSQRKRP 1329 Query: 1300 ATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPA 1359 A + G + L ++SF++AAS+QET+++L AA++ + D L GLKEN+IVG+ IPA Sbjct: 1330 AFGKVVIKGAKQVPLLSDSFLAAASYQETSKILVHAAISSRSDSLSGLKENIIVGKKIPA 1389 Query: 1360 GTG 1362 GT Sbjct: 1390 GTA 1392 >UniRef50_Q1ACN5 DNA-directed RNA polymerase subunit beta' n=2 Tax=Streptophytina RepID=RPOC1_CHAVU Length = 666 Score = 531 bits (1369), Expect = e-149, Method: Compositional matrix adjust. Identities = 266/542 (49%), Positives = 363/542 (66%), Gaps = 49/542 (9%) Query: 17 FDAIKIALASPDMIRSWS---------FGEVKKPETINYRTFKPERDGLFCARIFGPVKD 67 + ++I LASP IR W+ GEVK+P T++YR KPE+DGLFC +IFGP+K Sbjct: 7 YQFLQIGLASPKQIRKWAERILPNGDVVGEVKEPHTLHYRNQKPEKDGLFCEKIFGPIKS 66 Query: 68 YECLCGKYKRLKHRG---VICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRI 124 C CGKY+R+ +G C+KC VE T ++VRR RMG+I L P AH+W+LKS PS I Sbjct: 67 GRCACGKYERIPEQGEGKKFCKKCWVEFTYSRVRRYRMGYISLGCPVAHVWYLKSTPSHI 126 Query: 125 GLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLD----------------- 167 LL L+DIE + Y+ + G + +L ++Y Sbjct: 127 ANLLGQKLKDIESLAYYNHCL----GNPSTNYPTLLFIKKYFQYSSLAWLLHILLCFFSF 182 Query: 168 -ALEEFGDEFDAKMGAEAIQALLKSMDLE-------QECEQLR-----EELNETNSETKR 214 E D + G +AI+ LL +DL+ + CE+L +E ++ ++ Sbjct: 183 KGFEALEDR-EIATGGDAIKRLLSELDLQNTIDESRKACEELAYFDPLDEKEAQKAQREK 241 Query: 215 KKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVIN 274 ++L +RIK+ F ++ KP+WM+L+ +PVLPPDLRP++ L+ G ATSDLNDLYR+V+ Sbjct: 242 ERLVRRIKIASYFQETKIKPQWMVLSTIPVLPPDLRPMIHLNDGPLATSDLNDLYRKVLY 301 Query: 275 RNNRLKRLLD--LAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIK 332 RN L L AP ++ ++KR++QEAVDAL+DNG G + SN RP KSL+D+I Sbjct: 302 RNKTLWELRQGIWPAPHSLMISQKRLVQEAVDALIDNGLGGPPMRDSNNRPYKSLSDVIS 361 Query: 333 GKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLAT 392 GKQGRFRQNLLGKRVDYSGRSVI VGP+L+++QCGLPK MA+ELF+PF+ + + LA+ Sbjct: 362 GKQGRFRQNLLGKRVDYSGRSVIVVGPHLKIYQCGLPKNMAIELFQPFLIHYMINKKLAS 421 Query: 393 TIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPL 452 ++ AK +++ + +VW IL EVI++HPVLLNRAPTLHRLGIQAF+P+L+EGKAI LHPL Sbjct: 422 NLRVAKSIIQSKHPIVWFILKEVIKKHPVLLNRAPTLHRLGIQAFQPILVEGKAILLHPL 481 Query: 453 VCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYY 512 VCA +NADFDGDQMAVHVPL+ E+Q EAR +M+S N+LSPA G+PI +PSQD++LGLY Sbjct: 482 VCAGFNADFDGDQMAVHVPLSPESQKEARLIMISNRNLLSPATGDPITLPSQDMLLGLYM 541 Query: 513 MT 514 +T Sbjct: 542 LT 543 >UniRef50_C4XEN7 DNA-directed RNA polymerase n=2 Tax=Mycoplasma RepID=C4XEN7_MYCFE Length = 1506 Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust. Identities = 296/685 (43%), Positives = 413/685 (60%), Gaps = 98/685 (14%) Query: 12 TKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYEC- 70 K E + I ++LA+ D + WS GEV KPETINY+++KPERDGLF IFGP D +C Sbjct: 26 NKDREIEKITLSLATKDDVLQWSNGEVTKPETINYKSYKPERDGLFDELIFGPTTDNKCP 85 Query: 71 LCG-KYKRLKH-----RGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRI 124 +CG KYKR + +CEK + RR RMGHI L +P H WF K S I Sbjct: 86 VCGTKYKRSDEGTQCSKTPLCEKSKATILAKISRRSRMGHIHLQNPVVHFWFFKIDHSII 145 Query: 125 GLLLDMPL---------RDIERVLYFESYVVIE-GGMTNLERQQILTEEQ----YLDAL- 169 LL + + D+E+++Y++S++V+E GG+ L++ I+ + Y DAL Sbjct: 146 SKLLGLRVAKSSKTVSKTDLEKLIYYKSHIVLESGGIKALQKNAIIDIAEAAVIYRDALL 205 Query: 170 --------------------------------EEFGDEF-----------DA--KMGAEA 184 +++G +F DA G++A Sbjct: 206 EIRSKYSEESEEYEIINESLEELESYATSKMGKDYGIDFYEYNEIIHEYSDAIISTGSKA 265 Query: 185 IQALLKSMDLEQECEQLREELNETNSETK-----------RKKLTKRIKLLEAFVQSGNK 233 I+ LL+ +DL++E + + +E+ + N K R KL KR+ ++ AF+ SG Sbjct: 266 IEYLLEHVDLQKEAQLIEDEIKKINRSIKDKNHTGTRGQERSKLYKRLAVINAFINSGQD 325 Query: 234 PEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVR 293 P+ M++ LPV+P DLRPLV LDGGR +TSD+N+LYRR+I RNNRLK+ + AP +I + Sbjct: 326 PKSMLIYDLPVIPADLRPLVQLDGGRHSTSDINELYRRIIIRNNRLKKWEETDAPMLIKQ 385 Query: 294 NEKRMLQEAVDALLDNGRRG-RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGR 352 NE RM+QEAVD+L+DN R+ +T + RPLKS++D + GK+GRFRQNLLGKRVDYSGR Sbjct: 386 NEYRMIQEAVDSLIDNARKKPNPVTSKDSRPLKSISDALTGKKGRFRQNLLGKRVDYSGR 445 Query: 353 SVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRG--LATTIKAAKKMVEREEAVVWD 410 SVI VGP L++HQ G+P++MA +LF+P+I +L ++G +IKA KK VE + ++W Sbjct: 446 SVIVVGPELKMHQVGIPREMAAKLFEPWIIKEL-IKGDNQINSIKAGKKAVENLDPIIWP 504 Query: 411 ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHV 470 +++ I+ PVLLNRAPTLHRL IQA+EPVLI GKAI+LHPL C +NADFDGDQMAVHV Sbjct: 505 YVEKAIQGRPVLLNRAPTLHRLSIQAYEPVLIRGKAIKLHPLSCTPFNADFDGDQMAVHV 564 Query: 471 PLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAK--GEGMVLT 528 P++ EA EA+ LM+++ NIL P +GEPII P QD++LGLYY+T++ + K GEG Sbjct: 565 PISDEAVREAKELMLASRNILGPKDGEPIINPGQDIILGLYYLTQEATDDKVIGEGRYFG 624 Query: 529 GPKEAERLYRSGLASLHARVKVRITEYEK---DANGELVAKTSLKDTTVGRAILWMIVPK 585 E Y + L SLHARV + I+E K A+G+ S TVG+ I I P Sbjct: 625 SYDEMMTAYENKLVSLHARVVLPISEINKRVIPADGQDRYIVS----TVGKFIFNSIFPD 680 Query: 586 GLPYSI-------VNQALGKKAISK 603 + + + GKK IS+ Sbjct: 681 SFEFIFGKYVERNIKEVDGKKVISE 705 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 144/373 (38%), Positives = 215/373 (57%), Gaps = 33/373 (8%) Query: 587 LPYSIVNQALGKKA--ISKMLN-TCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDD 643 + Y V+Q +G + +KML +R V+ D++ G+ Y+ SG ++ I D Sbjct: 822 IEYRKVDQEIGWRVSDYTKMLERVWFRYTNFVADVL--DKLKALGYHYSTISGTTISISD 879 Query: 644 MVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQT 703 + + I E + + ++++ F+ GL+T ERY I WA D + K + + +T Sbjct: 880 VTTLPSTKDKIKEGDKYIEQLRDYFEQGLLTDDERYALTIQKWAEIKDSIEKDLKEVTKT 939 Query: 704 ETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMA------KPDG----- 752 + N ++MM SGARG+++ QLAGMRGLM K D Sbjct: 940 DPD-------------NPLFMMFTSGARGNSSNFVQLAGMRGLMNNNTKILKADAENERV 986 Query: 753 --SIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVT 810 S +E P+ ++F +GL +++ STHGARKGL DTAL TA SGYLTRRLVDVAQ +V+ Sbjct: 987 VRSTVEIPVKSSFLDGLTAYEFYSSTHGARKGLTDTALNTAKSGYLTRRLVDVAQGIVLR 1046 Query: 811 EDDCGTHEGIMMTPVIEG--GDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQW 868 EDDCGT G + +++ + E L +R+ GR + + P T ++++ + L+ Q Sbjct: 1047 EDDCGTDYGFEVKDILDTKTNTIIESLGERIEGRFSNVPIYHPRTKEMILDADQLITPQI 1106 Query: 869 CDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGT 928 + + + + +V++RSV+SC T GVC CYG+DLA ++N GEA+GV+AAQSIGEPGT Sbjct: 1107 AEEIVKAGIKSVEIRSVLSCYTKNGVCKKCYGKDLALNRVVNIGEAVGVVAAQSIGEPGT 1166 Query: 929 QLTMRTFHIGGAA 941 QLTMRTFH GG A Sbjct: 1167 QLTMRTFHTGGVA 1179 Score = 136 bits (343), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 87/251 (34%), Positives = 142/251 (56%), Gaps = 12/251 (4%) Query: 1129 GGTKDITGGLPRVADLFEARRPK--EPAILAEISGIVSF---GKETKGK----RRLVITP 1179 G +DITGG R+ +L +A +PA++AE G ++ K+T G + + + Sbjct: 1179 AGVEDITGGFGRLMELIDAYDSPWGKPAVIAEHYGKITKIEDKKDTLGNASDYQAITLEY 1238 Query: 1180 VDGSDPYEEMIP---KWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNE 1236 D + I K R+L V +G++V G I +GP +++L++ +V Y++ E Sbjct: 1239 EDEEGNTQSKIYAARKDRRLRVKKGDKVIPGQKIVEGPIILNELLKVADTRSVQNYLLKE 1298 Query: 1237 VQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANG 1296 VQ +YRLQG+ I+DK+IE+I+RQML K I + G S F G V+ + + L + G Sbjct: 1299 VQRLYRLQGITISDKYIEIIIRQMLSKIVITDPGDSKFFSGNLVDIFAYQRESARLISQG 1358 Query: 1297 KVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRL 1356 K + G + L ++SF++AAS+QET ++L A++A + D+L GLKEN+I+G Sbjct: 1359 KKPPFGEVKIKGAKQTPLLSDSFLAAASYQETPKILVNASIAAQSDKLEGLKENIILGHK 1418 Query: 1357 IPAGTGYAYHQ 1367 IPAGT + + Sbjct: 1419 IPAGTNCNFEE 1429 >UniRef50_Q4A5S8 DNA-directed RNA polymerase subunit beta' n=3 Tax=Bacteria RepID=RPOC_MYCS5 Length = 1492 Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust. Identities = 295/730 (40%), Positives = 440/730 (60%), Gaps = 95/730 (13%) Query: 10 AQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYE 69 ++ ++ I ++LA+ + + SWS G V KPETINY+T+KPE+DGLF IFGPV D++ Sbjct: 6 SKNNVKKIKQISLSLATNEDVLSWSNGVVSKPETINYKTYKPEKDGLFDEIIFGPVTDFK 65 Query: 70 C-LC-GKYKR-----LKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPS 122 C +C KYK+ + R CEK ++ RR RMGHI L +P H WF K S Sbjct: 66 CPICFTKYKKSDENTICKRTTSCEKIQPKILPKISRRSRMGHIALNNPVVHFWFFKINHS 125 Query: 123 RIGLLLDMPL---------RDIERVLYFESYVVIE-GGMTNLERQQILT----------- 161 I LL + + D+E+++Y++S++V+E GG+ +L++ I+ Sbjct: 126 TISKLLGLKVAGSNKPVTKSDLEKIIYYKSHIVLETGGLKSLQKNTIIDINDAADIYAGA 185 Query: 162 --------------EEQYLDAL------------EEFGDEF-----------DAKMG--A 182 E+ LD L +++G +F AK+G + Sbjct: 186 LEEILEFNKDNKDGYEEILDTLNDLKEYAASKTGQDYGIDFYEYNEIIEEYSQAKIGTGS 245 Query: 183 EAIQALLKSMDLEQECEQLREELNETNSETK----------RKKLTKRIKLLEAFVQSGN 232 +AI+ LLK++DLE+E +++++E++ N + K R KL KR+ ++++F++SG Sbjct: 246 KAIEYLLKNIDLEKESKEIQDEIDTINDQNKYEISSSEALKRNKLYKRLAIIKSFLKSGQ 305 Query: 233 KPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIV 292 KPE +++ LPV+P DLRPLV LDGGR +TSD+N+LYRR+I RNNRL++ + AP +I Sbjct: 306 KPENLLIYNLPVIPADLRPLVQLDGGRHSTSDINELYRRIIIRNNRLEKWYESDAPVLIK 365 Query: 293 RNEKRMLQEAVDALLDNGRRGRA-ITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSG 351 +NE RMLQEAVDAL+DN R+ +T + P KS++D + GK+GRFRQNLLGKRVDYSG Sbjct: 366 QNEFRMLQEAVDALIDNSRKKPGPVTSKDGHPFKSISDALVGKKGRFRQNLLGKRVDYSG 425 Query: 352 RSVITVGPYLRLHQCGLPKKMALELFKPFIYGKL--ELRGLATTIKAAKKMVEREEAVVW 409 RSVI VGP+L+++Q G+P+ MA +LF+P+I ++ E G+ ++KAAKK+V+ ++W Sbjct: 426 RSVIVVGPHLKMYQVGIPRDMAAKLFEPWIINRIMKEEEGI-NSVKAAKKLVDSLNPIIW 484 Query: 410 DILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVH 469 +++V+ PVLLNRAPTLHRL IQAF+PVLI GKAI++HPLV A+NADFDGDQMAVH Sbjct: 485 PYVEQVLENRPVLLNRAPTLHRLSIQAFQPVLIRGKAIKIHPLVTTAFNADFDGDQMAVH 544 Query: 470 VPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTG 529 VP++ A EA+ LM+++ NIL P +GEPII PSQD++LGLYY+T + N K EG Sbjct: 545 VPISKAAVREAQELMLASKNILGPKDGEPIINPSQDIILGLYYLTIEKANQKNEGKFYPS 604 Query: 530 PKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLK--DTTVGRAILWMIVPKGL 587 E Y + +L RV + ++ +K + ++ KT +TVG+ IL P+ Sbjct: 605 FNEMMLAYENKYINLATRVVLPVSALKKIS---ILQKTDAPYIYSTVGKFILNNAFPRDF 661 Query: 588 PYSIVNQALGKKAISKMLNTCYR---ILGLKPTVIFADQ-IMYTGFAYAARSGASVGIDD 643 + GK+ K+ +T ++ LK + ++ I F Y A + D Sbjct: 662 DF-----VFGKRVTEKLTSTNEHGEEVVSLKTKIDTSEHDIKRYVFNYGDNFTAKIKEAD 716 Query: 644 MVIPEKKHEI 653 + +P K EI Sbjct: 717 VNLPLNKKEI 726 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 145/369 (39%), Positives = 211/369 (57%), Gaps = 33/369 (8%) Query: 590 SIVNQALGK-KAISKMLN-TCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIP 647 SI N + K +K+L +R TV+ D I GF ++ +SG ++ ++D+V Sbjct: 808 SIFNHKYWELKHYTKLLERVWFRYSNYVSTVL--DVIKDLGFKFSTKSGITISMNDIVTS 865 Query: 648 EKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVI 707 + E I +AE E +++ F+ G +T ERY I W+ + + K + + + Sbjct: 866 KTTKERIKKAEEETEALKDYFKKGYLTDDERYTLTIKKWSDVKESIEKELKKVVDS---- 921 Query: 708 NRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMA------KPDG-------SI 754 N D N ++MM SGARG+ + QLAGMRGLM K D SI Sbjct: 922 NLD---------NPLFMMLSSGARGTYSNFTQLAGMRGLMNNNTKILKADAENDRVVRSI 972 Query: 755 IETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDC 814 +E P+ ++F +GL +++ STHGARKGL DTAL TA SGYLTRRLV+VAQ +V+ E+DC Sbjct: 973 VEIPVKSSFLDGLTAYEFYSSTHGARKGLTDTALNTAKSGYLTRRLVEVAQGVVIREEDC 1032 Query: 815 GTHEGIMMTPV--IEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLL 872 G+ G ++ + + + E L++R+ GR TA + ++V + L+ + + Sbjct: 1033 GSDYGFVVKDIKDTKTNTIIESLQERIEGRFTAVPIYDQN-GKLIVKESELITPEIASEI 1091 Query: 873 EENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTM 932 + V++RSV+SC T G+C CYG+DLA I+N GEA+GVIAAQSIGEPGTQLTM Sbjct: 1092 VAKGITKVEIRSVLSCHTRNGLCKKCYGKDLATNRIVNIGEAVGVIAAQSIGEPGTQLTM 1151 Query: 933 RTFHIGGAA 941 RTFH GG A Sbjct: 1152 RTFHTGGVA 1160 Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 88/253 (34%), Positives = 143/253 (56%), Gaps = 14/253 (5%) Query: 1129 GGTKDITGGLPRVADLFEAR-RP-KEPAILAEISGIVSF--------GKETKGKRRLVIT 1178 G +DITGG R+ +L +A +P PA ++ G V GKE+ G+ + + Sbjct: 1160 AGGEDITGGFGRLIELIDAYDQPWGTPAEISRHYGKVKKIETQKNKKGKES-GQFNISVE 1218 Query: 1179 PVD---GSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVN 1235 D ++ ++ ++L V +G+ V G +S+GP +++L AV YI+ Sbjct: 1219 YFDEDGNKQTHQYLVKSSQRLRVKQGDEVVAGQKLSEGPIVLNELLESVDTRAVQNYILK 1278 Query: 1236 EVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEAN 1295 EVQ +YRLQG+ I DK+IE+I+RQML K +I++ G S F G V+ + N L + Sbjct: 1279 EVQKLYRLQGIAIADKYIEIIIRQMLSKISIIDPGDSSFYSGSLVDAFVYQKENGILLSQ 1338 Query: 1296 GKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGR 1355 GK A + G + L ++S+++AAS+QET ++L +A++A + D L GLKEN+I+G Sbjct: 1339 GKKPAYGVVKIKGAKQTPLLSDSWLAAASYQETAKILVDASIAKRTDNLEGLKENIIIGY 1398 Query: 1356 LIPAGTGYAYHQD 1368 IPAGT + ++ Sbjct: 1399 KIPAGTNSNFEEN 1411 >UniRef50_Q0P3M5 DNA-directed RNA polymerase subunit beta' n=1 Tax=Ostreococcus tauri RepID=RPOC1_OSTTA Length = 740 Score = 514 bits (1325), Expect = e-144, Method: Compositional matrix adjust. Identities = 271/592 (45%), Positives = 355/592 (59%), Gaps = 97/592 (16%) Query: 18 DAIKIALASPDMIRSWS---------FGEVKKPETINYRTFKPERDGLFCARIFGPVKDY 68 + +++ LASP I+ WS GE+ K +TINYRTFKPER GLFC RIFG + Sbjct: 4 EYVQLQLASPSEIKRWSQRILPTGEVVGEISKADTINYRTFKPERGGLFCERIFGSTSNG 63 Query: 69 ECLCGKYKR-------------LKHRGV----------ICEKCGVEVTQTKVRRERMGHI 105 EC CGK KR L+ R +C CGVE T +KVRR RMG I Sbjct: 64 ECSCGKTKRRKLIVPVNFNRLTLQKRNAELEATQAIIEVCPSCGVEPTNSKVRRYRMGCI 123 Query: 106 ELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQY 165 L P AH+W+ ++ P+ + LL+M ++I+ ++F++Y + G N + + Y Sbjct: 124 SLKKPVAHMWYFRNSPNVLAALLNMRSQEIDETIHFQTYTPSKYGTQNYCLHGGV--QWY 181 Query: 166 LDALEE----FGDEFDAKM-----------------------GAEAIQALLKSMDLEQEC 198 ++ E F + D M G EA+Q LL +DL Sbjct: 182 VNHWEPMHPYFAGDIDVSMDKAASWNSKSTFMPSQIKTIENCGGEALQELLTRLDLVFLQ 241 Query: 199 EQLREELNET-----------NSETKRKKLTK---------------------RIKLLEA 226 L +L T KR+K K R++ + + Sbjct: 242 RMLSRKLKNTIEKKKLAAKSLRKRHKRRKTAKLLGRTDQKNYGITIKVREYSRRLEFIRS 301 Query: 227 FVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLA 286 + G +PEWMIL++ PVLPPDLRP++ + GRFATSDLNDLYRR+I R R ++ L L Sbjct: 302 LARKGLRPEWMILSIFPVLPPDLRPMIQMSSGRFATSDLNDLYRRLIYRKIRFEKFLTLF 361 Query: 287 ----APDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNL 342 PD+++R++ +LQEA D+++DNGR + N++P KSL +I+GK GRFRQNL Sbjct: 362 DEEFLPDLLIRHDLCLLQEAADSIIDNGRLDKPAQRPNRKPFKSLTSIIEGKHGRFRQNL 421 Query: 343 LGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVE 402 LGKRVDYSGRSVI VGP LRLHQCGLP++MALELF+PF+ L I+AAK +++ Sbjct: 422 LGKRVDYSGRSVIVVGPKLRLHQCGLPREMALELFQPFVIRALLEESGVKNIRAAKNLLQ 481 Query: 403 REEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFD 462 R +VWDILD V+ HPVLLNRAPTLHRLGIQAFEP+L+ G+AIQLHPLVC A+NADFD Sbjct: 482 RRSQMVWDILDTVVLGHPVLLNRAPTLHRLGIQAFEPILLSGRAIQLHPLVCPAFNADFD 541 Query: 463 GDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT 514 GDQMAVHVPL LEAQ EAR LM++T+N LSPA GEP I+PSQD++LG YY+T Sbjct: 542 GDQMAVHVPLGLEAQAEARLLMLATHNWLSPATGEPSILPSQDMILGFYYLT 593 >UniRef50_Q4A7B0 DNA-directed RNA polymerase subunit beta' n=5 Tax=Mycoplasma RepID=RPOC_MYCH7 Length = 1412 Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust. Identities = 286/667 (42%), Positives = 388/667 (58%), Gaps = 94/667 (14%) Query: 10 AQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYE 69 A+ I +ALA+P+ + WS GEV +PETINY+TFKPER GLF IFGP+ DY+ Sbjct: 10 AKISENSIQKISLALATPEDVLEWSRGEVHRPETINYKTFKPERGGLFDELIFGPLVDYK 69 Query: 70 C-LCGKYKRLKHRGVIC---EKC---GVEVTQTKVRRERMGHIELASPTAHIWFLKSLPS 122 C +CG+ R + +C ++C G + RR MGHI L +P H WF K S Sbjct: 70 CSVCGRKYRKSNENQLCIATKECKIRGSRILSKMARRYSMGHIALNAPILHFWFFKIDHS 129 Query: 123 RIGLLLDMPLRD-------------IERVLYFESYVVIE-GGMTNLERQQIL-------- 160 I LL + + + IE ++Y++S++V+E GG+ +LE+ +I+ Sbjct: 130 IIAKLLGLKVFEGNSKVPTTITKTAIENLIYYKSHIVLETGGLKSLEQNKIIDISEAGLI 189 Query: 161 ---------------TEEQ--YLDALEEFGDEFDAKMGAE-------------------- 183 +EE +++ E D +K+G E Sbjct: 190 YKNALIEIIEFYPPGSEEHNALAESISELADVTSSKIGREYGVDYYELNEIIEEFSSARI 249 Query: 184 -----AIQALLKSMDLEQECEQLREELNETNSET-----------KRKKLTKRIKLLEAF 227 AI+ LL +DL E + EL + KR KL KR++++ AF Sbjct: 250 ATGALAIEYLLDKIDLRAEKAAVEAELAGVQKQIYKNKKIILKNQKRDKLYKRLQVINAF 309 Query: 228 VQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAA 287 + SG P+ MI+ LPV+P DLRPLV LDG R +TSD N+LYRR+I RNNRLKR A Sbjct: 310 INSGQDPKMMIIRNLPVIPADLRPLVQLDGSRHSTSDCNELYRRIIIRNNRLKRWKAAHA 369 Query: 288 PDIIVRNEKRMLQEAVDALLDNGRRG-RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKR 346 P II++NE RMLQEAVDAL+DN ++ +T RPLKS++D + GK+GRFRQNLLGKR Sbjct: 370 PVIIIQNEMRMLQEAVDALIDNQKKSTNQVTTKEGRPLKSISDALTGKKGRFRQNLLGKR 429 Query: 347 VDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEA 406 VDYSGRSVI VGP L++HQ GLP+KMA LF+P+I L +IK A+KM+E E Sbjct: 430 VDYSGRSVIVVGPKLKMHQAGLPRKMAAVLFEPWIIRNLIQEKKVGSIKMARKMIEEENP 489 Query: 407 VVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQM 466 ++W + +VI+ P++LNRAPTLHRL IQAFEPVL+ KAIQLHPLV A +NADFDGDQM Sbjct: 490 IIWPHVAKVIQNKPIILNRAPTLHRLSIQAFEPVLVRAKAIQLHPLVTAGFNADFDGDQM 549 Query: 467 AVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMV 526 AVH+P++ EA E + LM + NIL P +GEPI+ PSQD+VLGLYY++++ AKGEG Sbjct: 550 AVHIPISPEAIRETQELMFADKNILGPKDGEPIVNPSQDMVLGLYYLSQEKAGAKGEGSF 609 Query: 527 LTGPKEAERLYRSGLASLHARVKVRITEYE----KDANGELVAKTSLKDTTVGRAILWMI 582 + + + Y LHARV + + + K G L+ +TVG+ IL I Sbjct: 610 FSTYEAMLKAYEFRSVELHARVVLPFEQVKPFIAKTMRGHLI-------STVGKFILNNI 662 Query: 583 VPKGLPY 589 P P+ Sbjct: 663 FPANFPF 669 Score = 249 bits (635), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 139/336 (41%), Positives = 194/336 (57%), Gaps = 29/336 (8%) Query: 622 DQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNK 681 D+I GF Y+ SG S+ I D+ + KKHE I E E + ++ + GL+T ERY Sbjct: 825 DKIKDLGFHYSTLSGTSIAISDIKMAPKKHEFIKEGENYINKLNTFYAKGLITDDERYVL 884 Query: 682 VIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLA 741 I W + + + + N+ +++ Q NS+ MM SGARG+ + QLA Sbjct: 885 AIAKWTQIKNDIQEDL----------NQSIKDDNQ---NSLVMMMKSGARGNISNFVQLA 931 Query: 742 GMRGLMA------KPDG-------SIIETPITANFREGLNVLQYFISTHGARKGLADTAL 788 GMRGLMA K D SI+E P+ ++F EGL +++ STHGARKGL DTAL Sbjct: 932 GMRGLMANNVKALKVDAENERVVRSIVEVPVKSSFLEGLTSFEFYSSTHGARKGLTDTAL 991 Query: 789 KTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIE--GGDVKEPLRDRVLGRVTAE 846 TA SGYLTRRLVDVAQ++VV +DC + G ++ +I+ + PL +R+ GR + Sbjct: 992 NTAKSGYLTRRLVDVAQNIVVVAEDCFSDFGFVVKDIIDTKTNTIIVPLLERIEGRFLNK 1051 Query: 847 DVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARG 906 DV L T++ Q + + V++RS++SC VC CYG+DLA Sbjct: 1052 DVYDSRGIK-LASAGTMVDLQTAKKIVAAGIKKVEIRSILSCHIKNSVCKKCYGKDLATN 1110 Query: 907 HIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAAS 942 +++ GEA+G+IAAQSIGEPGTQLTMRTFH GG A+ Sbjct: 1111 RLVSIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAN 1146 Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/248 (31%), Positives = 138/248 (55%), Gaps = 11/248 (4%) Query: 1129 GGTKDITGGLPRVADLFEARRPK--EPAILAEISGIVS----FGKETKGKRRLVITPVDG 1182 +DITGG R+ +L ++ +PA ++ GI++ ++ + +IT Sbjct: 1145 ANVEDITGGFTRLIELIDSHEHPWGKPAKISPYYGIITKISDLAEKNAANKGFLITIEYK 1204 Query: 1183 SDPYEEM-----IPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEV 1237 + E+ I + ++L V G++V G + +GP ++L + + Y++ E+ Sbjct: 1205 TSKNEKAEHIIRIEQSQKLRVKVGDKVIPGQKLVEGPIILKELLAVSDARTLQNYLLKEI 1264 Query: 1238 QDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGK 1297 Q +YR+QG+ I+DK+IE+I+RQML K I+ G S+F G V+ S + N +L + K Sbjct: 1265 QRIYRMQGISISDKYIEIIIRQMLSKVQIIENGDSNFFIGSIVDISDYQEVNGQLISQNK 1324 Query: 1298 VGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLI 1357 A + + G + L + SF++AAS+QET+++L + ++ + D+L GLKEN+IVG I Sbjct: 1325 NPAFGNVIVKGAKQIPLLSNSFLAAASYQETSKILVHSVISSQIDKLEGLKENIIVGHKI 1384 Query: 1358 PAGTGYAY 1365 PAGT Y Sbjct: 1385 PAGTNSNY 1392 >UniRef50_Q32RG1 DNA-directed RNA polymerase subunit beta' n=2 Tax=Streptophyta RepID=RPOC1_ZYGCR Length = 715 Score = 498 bits (1282), Expect = e-139, Method: Compositional matrix adjust. Identities = 262/574 (45%), Positives = 352/574 (61%), Gaps = 78/574 (13%) Query: 15 EEFDAIKIALASPDMIRSWS---------FGEVKKPETINYRTFKPERDGLFCARIFGPV 65 + I+I LASP+ IRSW+ G V KP TI+Y+T KPE+DGLFC R+FGP+ Sbjct: 5 DHLQYIRIGLASPEQIRSWAERRLPNGELIGRVSKPYTIHYQTHKPEKDGLFCERVFGPI 64 Query: 66 KDYECLCGKYK---RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPS 122 K C CGKY+ K CEKCGVE T+ +VRR RMG+I+L P H+W+LK+ PS Sbjct: 65 KSGVCACGKYQGTISTKDSPKYCEKCGVEFTEARVRRHRMGYIDLQCPVTHVWYLKNRPS 124 Query: 123 RIGLLLDMPLRDIERVLYFESY----VVIEGGMTNL---------ERQQ---------IL 160 I LL+ PL+DIE ++Y++S+ V E + L +R Q L Sbjct: 125 VIARLLNQPLQDIESLVYYDSFLARPVTNEPTLIRLLPTQSKLYKDRSQSTFDKPLELFL 184 Query: 161 TEEQYLDALEEFGDEFDAKM-----------GAEAIQALLKSMDL-------EQECEQLR 202 +E + AL F F K GA+ I LL ++L + + L Sbjct: 185 FDEPWQSALSNF---FSPKWFHLIQIREMLTGADVIHKLLSGLNLTNAMFHARNQWKHLA 241 Query: 203 EELNETNSET----------------------KRKKLTKRIKLLEAFVQSGNKPEWMILT 240 ++ E+ SE ++ + +RI L+ +QS +PEWM+L Sbjct: 242 KKAPESQSEVIEAQGPVPQAEEEKQRDQSIQQQKDAVLRRITLIRDLLQSQTQPEWMVLR 301 Query: 241 VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ 300 LPVLPPDLRP++ L G+ SDLN+LYRRV+ RN + + + P I +K++LQ Sbjct: 302 TLPVLPPDLRPILELKDGQLIRSDLNELYRRVLYRNQLICQF-SVEDPFCISMMQKKLLQ 360 Query: 301 EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360 +A+D+LL NG G I N RP KSL+D+IKGK+GRFR+NLLGKRVDYSGRSVI VGPY Sbjct: 361 QAIDSLLANGAGGNIIRDRNMRPYKSLSDIIKGKKGRFRENLLGKRVDYSGRSVIVVGPY 420 Query: 361 LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP 420 L L+QCGLP++MA+ELF+PF+ L + A +AAK M++R +VW IL ++ +H Sbjct: 421 LSLYQCGLPREMAIELFQPFVIRGLIINHFARNPRAAKSMIQRRHPIVWKILKMIVDDHL 480 Query: 421 VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480 V+LNRAPTLHRLG+QAF+PVL+ +AI LHPLVC +NADFDGDQMAVHVPL+LEAQ EA Sbjct: 481 VILNRAPTLHRLGVQAFQPVLVRERAIHLHPLVCTGFNADFDGDQMAVHVPLSLEAQAEA 540 Query: 481 RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT 514 LM N+LSP G+ I+VP+QD++LGLY +T Sbjct: 541 HLLMSPYFNLLSPGTGDAIVVPTQDMLLGLYALT 574 >UniRef50_A4GYP9 DNA-directed RNA polymerase subunit beta' n=15 Tax=Magnoliophyta RepID=RPOC1_POPTR Length = 689 Score = 486 bits (1250), Expect = e-135, Method: Compositional matrix adjust. Identities = 254/536 (47%), Positives = 350/536 (65%), Gaps = 43/536 (8%) Query: 20 IKIALASPDMIRSWS---------FGEVKKPETINYRTFKPERDGLFCARIFGPVKDYEC 70 ++I SP I +W+ GEV KP T +Y+T KPE+DGLFC RIFGP+K C Sbjct: 17 LRIGSVSPQQISAWTNKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGIC 76 Query: 71 LCGKYKRL---KHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLL 127 CG Y+ + K CE+CGVE +++RR +MG+I+LA P H+W+LK LPS I L Sbjct: 77 ACGNYRVIGDEKEEPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANL 136 Query: 128 LDMPLRDIERVLYFE-----------SYVVIEGGMTNLERQQILTEEQYLDALEEFGDEF 176 LD PL+ +E ++Y + +++ + G E Q + F D F Sbjct: 137 LDKPLKQLEGLVYCDFSFARPIAKKPTFLRLRGSF-EYEIQSWKYSIPLFFTTQGF-DTF 194 Query: 177 ---DAKMGAEAIQALLKSMDL-------EQECEQLREELNETNSETKRKK------LTKR 220 + GA AI+ LL +DL E ++L EE N RK L +R Sbjct: 195 RNREISTGAGAIRELLADLDLRIILDYSSLEWKELGEEGPTGNEWEDRKVGRRKDFLVRR 254 Query: 221 IKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLK 280 ++L + F+++ +PEWM+L +LPVLPP+LRP++ +DGG+ +SD+N+LYRRVI RNN L Sbjct: 255 VELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLT 314 Query: 281 RLLDLA--APDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRF 338 LL + P +V +++++QEAVD LLDNG RG+ + + + KS +D+I+GK+GRF Sbjct: 315 DLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRF 374 Query: 339 RQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAK 398 R+ +LGKRVDYSGRSVI VGP L LH+CGLP+++A+ELF+ F+ L + LA+ I AK Sbjct: 375 RETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAK 434 Query: 399 KMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYN 458 + +E +VW IL EV+R HP+LLNRAPTLHRLGIQAF+P+L+EG+AI LHPLV +N Sbjct: 435 SKIREKEPIVWGILQEVMRGHPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVRKGFN 494 Query: 459 ADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT 514 ADFDGDQMAVHVPL+LEAQ EAR LM S N+LSPA G+PI VP+QD+++GLY +T Sbjct: 495 ADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLT 550 >UniRef50_P56763 DNA-directed RNA polymerase subunit beta' n=180 Tax=Embryophyta RepID=RPOC1_ARATH Length = 680 Score = 484 bits (1247), Expect = e-135, Method: Compositional matrix adjust. Identities = 255/534 (47%), Positives = 349/534 (65%), Gaps = 39/534 (7%) Query: 20 IKIALASPDMIRSWS---------FGEVKKPETINYRTFKPERDGLFCARIFGPVKDYEC 70 ++I L SP I +W+ GEV KP T +Y+T KPE+DGLFC RIFGP+K C Sbjct: 10 LRIGLVSPQQISAWATKIIPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGIC 69 Query: 71 LCGKYKRL---KHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLL 127 CG Y+ + K CE+CGVE +++RR +MG+I+L P H+W+LK LPS I L Sbjct: 70 ACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLKRLPSYIANL 129 Query: 128 LDMPLRDIERVLY--FESYVVIEGGMTNLERQQILTEE----QYLDALEEFGDEFDA--- 178 LD PL+++E ++Y F I T L + E +Y L FD Sbjct: 130 LDKPLKELEGLVYCDFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDIFRN 189 Query: 179 ---KMGAEAIQALLKSMDLE-------QECEQLREELNETNSETKRK------KLTKRIK 222 GA AI+ L +DL E +QL EE N RK L +R++ Sbjct: 190 REISTGAGAIREQLADLDLRIIIENSLVEWKQLGEEGPTGNEWEDRKIVRRKDFLVRRME 249 Query: 223 LLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL 282 L + F+++ +PEWM+L +LPVLPP+LRP++ ++GG+ +SD+N+LYRRVI RNN L L Sbjct: 250 LAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIEGGKLMSSDINELYRRVIYRNNTLTDL 309 Query: 283 LDLA--APDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQ 340 L + P +V +++++QEAVD LLDNG RG+ + + + KS +D+I+GK+GRFR+ Sbjct: 310 LTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRE 369 Query: 341 NLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKM 400 LLGKRVDYSGRSVI VGP L LH+CGLP+++A+ELF+ F+ L + LA+ I AK Sbjct: 370 TLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSQ 429 Query: 401 VEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNAD 460 + ++ +VW+IL EV++ HPVLLNRAPTLHRLGIQ+F+P+L+EG+ I LHPLVC +NAD Sbjct: 430 IREKKPIVWEILQEVMQGHPVLLNRAPTLHRLGIQSFQPILVEGRTICLHPLVCKGFNAD 489 Query: 461 FDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT 514 FDGDQMAVHVPL+LEAQ EAR LM S N+LSPA G+PI VP+QD+++GLY +T Sbjct: 490 FDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLT 543 >UniRef50_P49467 DNA-directed RNA polymerase subunit beta' n=4 Tax=Bacillariophyta RepID=RPOC1_ODOSI Length = 843 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 203/342 (59%), Positives = 268/342 (78%), Gaps = 1/342 (0%) Query: 214 RKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVI 273 R + KRI++LE + +G+ P WMILT+LPV+PP LRP++ L+GGRFATSDLN+LYRR+I Sbjct: 440 RDQAIKRIRILENLLATGSNPAWMILTILPVIPPALRPMIQLEGGRFATSDLNELYRRII 499 Query: 274 NRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKG 333 RNNRL RLL++ AP +I+RNEKRMLQEAVD L+DNG+RG+ +N RPLKSL+D+IKG Sbjct: 500 TRNNRLLRLLEIDAPQLIIRNEKRMLQEAVDTLIDNGKRGKIALSANNRPLKSLSDIIKG 559 Query: 334 KQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATT 393 K GRFRQNLLGKRVDYSGRSVI VGP LRL++CGLP +MALELF+PF+ ++ +GLA+ Sbjct: 560 KHGRFRQNLLGKRVDYSGRSVIVVGPSLRLNECGLPYEMALELFQPFLIREMINQGLASN 619 Query: 394 IKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLV 453 +K A+ ++E+ EA++ +L++V+ HP+ LNRAPTLHRLGIQAFEP+L++G+AI+LHPLV Sbjct: 620 MKIARNLIEQNEAIIDPVLEKVLSNHPIFLNRAPTLHRLGIQAFEPILVQGRAIKLHPLV 679 Query: 454 CAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYM 513 C+A+NADFDGDQMAVH+PL+LE+Q E LM++ N LSPANGEPII+PSQD+VLG YY+ Sbjct: 680 CSAFNADFDGDQMAVHIPLSLESQSECYMLMLAPYNFLSPANGEPIILPSQDMVLGCYYL 739 Query: 514 TRDCVNA-KGEGMVLTGPKEAERLYRSGLASLHARVKVRITE 554 T + G ++ Y LH + +R T+ Sbjct: 740 TVSNIKGLLGSNQYFASLEDVLLAYNQDKIELHTAIWIRYTD 781 Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 71/125 (56%), Positives = 91/125 (72%), Gaps = 9/125 (7%) Query: 15 EEFDAIKIALASPDMIRSWSF---------GEVKKPETINYRTFKPERDGLFCARIFGPV 65 +EFD I I LASP I WS+ GEV+K ETINYRTFKPE DGLFC RIFGP Sbjct: 6 KEFDYINIKLASPLRILQWSYRRLPNGQFIGEVQKSETINYRTFKPEMDGLFCERIFGPS 65 Query: 66 KDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIG 125 + +EC CGKYK +++ G+ICE+CGVE+T+++VRR RMGHI L P AH+W+ S P+ + Sbjct: 66 RSFECACGKYKLIRYEGLICERCGVELTESRVRRHRMGHINLIYPVAHVWYTNSRPNYMA 125 Query: 126 LLLDM 130 LLL++ Sbjct: 126 LLLEV 130 >UniRef50_B7T2U0 DNA-directed RNA polymerase n=68 Tax=Magnoliophyta RepID=B7T2U0_9ROSI Length = 707 Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust. Identities = 246/579 (42%), Positives = 340/579 (58%), Gaps = 74/579 (12%) Query: 11 QTKTEEFDAIKIALASPDMIRSWS---------FGEVKKPETINYRTFKPERDGLFCARI 61 Q+K ++ ++I L SP I +W+ GEV + + I+ T KP+ GL C RI Sbjct: 4 QSKHQQ---LRIGLVSPQQISAWANKTLPNGTIVGEVTEIDPIDLETNKPKVGGLLCERI 60 Query: 62 FGPVKDYECLCGKYKRL-----KHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWF 116 FGP+K C CG + K + C CGVE +++RR +MG+I+LA P H+W+ Sbjct: 61 FGPIKSGVCACGISGKFGDPNEKRKRTFCGDCGVEFANSRIRRYQMGYIKLACPVTHVWY 120 Query: 117 LKSLPSRIGLLLDMPLRDIERVLY--FESYVVIEGGMTNLERQQILTEEQYLDALEEFGD 174 L+ LPS I +LD PL+++E ++Y F I T L + + E + + Sbjct: 121 LRRLPSYIANILDKPLKELENLVYCNFAFARPITKKPTLLRLRGLFKYETPPEPWHWYAS 180 Query: 175 --------------EFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETK------- 213 + GA AI+ L +DL E E E +E K Sbjct: 181 IPPFLSPQGWHTLRNRELSTGASAIREQLGDLDLRVIIESSLAEWKELEAEWKELEAEWK 240 Query: 214 -----------------------RKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLR 250 ++ L +R+ L + F+++ +PEWM+L++LPVLPP LR Sbjct: 241 ELEEEGLPGDPWQERTIQKIERRKRFLVRRMGLAKHFIRTSVEPEWMVLSLLPVLPPGLR 300 Query: 251 PLVPLDGGRFATS----DLNDLYRRVINRNNR-LKRLLDLAAPDIIVRNEKRMLQEAVDA 305 P + A S D+N LY RV++RN LK + P+ ++ +++ +LQEAVD Sbjct: 301 P-AAVHREELALSRRGSDINTLYGRVLSRNKEVLKFIRTPFTPEDVIMSQQILLQEAVDT 359 Query: 306 LLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQ 365 LLDNG RG+ I R KS +D+IKGK+GRFR+ LLGKRVDYSGRSVI VGP L LHQ Sbjct: 360 LLDNGVRGQPIRDGQNRVYKSFSDVIKGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHQ 419 Query: 366 CGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNR 425 CGLP+++A+ELF+PF+ L + LA I AAK + +E +VW+IL EVI+ HPVLLNR Sbjct: 420 CGLPREIAIELFQPFLIRSLIQQNLAPNIGAAKSQIREKERIVWEILREVIQGHPVLLNR 479 Query: 426 APTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMM 485 APTLHRLGIQAF+P+L++G+AI LHPLVC +NADFDGDQMAVHVPL+LEAQ EAR LM Sbjct: 480 APTLHRLGIQAFQPILVQGRAIYLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMF 539 Query: 486 STNNILSPANGEPIIVPSQDVVLGLYYMTRD-----CVN 519 S N+L+P+ G+PI VP+QD+++GLY +T CVN Sbjct: 540 SHMNLLAPSIGDPICVPTQDMLIGLYILTSGNRRGLCVN 578 >UniRef50_P23580 DNA-directed RNA polymerase subunit beta' n=2 Tax=Euglena RepID=RPOC1_EUGGR Length = 586 Score = 418 bits (1074), Expect = e-115, Method: Compositional matrix adjust. Identities = 221/526 (42%), Positives = 314/526 (59%), Gaps = 45/526 (8%) Query: 18 DAIKIALASPDMIRSWS---------FGEVKKPETINYRTFKPERDGLFCARIFGPVKDY 68 D ++I +ASP + SW+ G + + +++ T KP GL C RIFG K Sbjct: 3 DYVRIKIASPQQVLSWTERSLPDGRLIGRLTNFDMLHFETKKPVFGGLLCERIFGSTKTN 62 Query: 69 ECLCGKYKRLKHRG------VICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPS 122 +C CGKYK++ +G ++C C VE+ RR RMG+I+L P H W+LKS P Sbjct: 63 QCFCGKYKKMFQKGYANNFVLVCANCFVEINNCNRRRFRMGYIDLVFPLIHTWYLKSRPC 122 Query: 123 RIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGA 182 + ++L +++I+++ + +SY+ I + + ILT GA Sbjct: 123 YLAIMLGKKVKNIKKMCFMDSYIKIRNN--DGQTVGILT-------------------GA 161 Query: 183 EAIQALLKSMDLEQECEQLR------EELNETNSETK---RKKLTKRIKLLEAFVQSGNK 233 EAI + L +DLE E L E+L E N E RKK RIKL+ AF+Q+ K Sbjct: 162 EAIYSRLSKIDLESLIEFLYKRLVGIEKLKEYNFEKYLWLRKKFINRIKLVNAFIQTNTK 221 Query: 234 PEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVR 293 P W+++ LPVLPPD+RP+V L G +DLN LY +I NN++ +L P+ + Sbjct: 222 PIWIMIHFLPVLPPDIRPVVKLQDGTVIMTDLNFLYIDIIYGNNKIIKLRKFLLPEEFML 281 Query: 294 NEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRS 353 NEKR LQ VDA ++N N + LKS+ + +KGK+GRFR+NLLGK VDYSGRS Sbjct: 282 NEKRSLQVKVDAFINNENISENPYEQNDKKLKSITEGLKGKKGRFRENLLGKTVDYSGRS 341 Query: 354 VITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILD 413 VI V P L LH+CG+P +ALELF P + L + I+ AK+ + V +L+ Sbjct: 342 VIVVEPKLLLHECGMPLDIALELFHPILIKMLIRFKFSVGIREAKRHIYNASNFVIPVLE 401 Query: 414 EVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLT 473 +V+ + +LLNRAPTLHRLGIQ+F+P + KAI LHPLVC+A+NADFDGDQM +H+PL+ Sbjct: 402 KVLNSYFILLNRAPTLHRLGIQSFQPKVTFEKAILLHPLVCSAFNADFDGDQMGIHIPLS 461 Query: 474 LEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVN 519 L++ EAR++++S NN + PANG P I+PSQD+VLG YY+T + N Sbjct: 462 LKSLAEARSMLISINNCVLPANGLPSILPSQDMVLGCYYVTLENCN 507 >UniRef50_C1KR62 DNA-directed RNA polymerase n=2 Tax=Micromonas RepID=C1KR62_9CHLO Length = 793 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 185/306 (60%), Positives = 233/306 (76%), Gaps = 4/306 (1%) Query: 213 KRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRV 272 K KKL KR+ + + +PEWMI++V PVLPPDLRP++ + GRFA SDLNDLYRR+ Sbjct: 341 KIKKLAKRLHYVRLLARKQLRPEWMIVSVFPVLPPDLRPMIQMASGRFAASDLNDLYRRL 400 Query: 273 INRNNRLKRLLDLA----APDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLA 328 I R R + +L PD+++R++ +LQEA DA++DNGR + NK KSL Sbjct: 401 IYRKIRFDKFCNLFDAEFLPDLLIRHDLCLLQEAADAIIDNGRLEKPAQRPNKTVFKSLT 460 Query: 329 DMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELR 388 +I+GK GRFRQNLLGKRVDYSGRSVI VGP LRLHQCGLP++MALELF PFI L Sbjct: 461 AIIEGKHGRFRQNLLGKRVDYSGRSVIVVGPKLRLHQCGLPREMALELFHPFIIQALLEH 520 Query: 389 GLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQ 448 G+ I+AAK ++++ VWDIL+ V+ HP+LLNRAPTLHRLGIQAFEP+L+ G+AIQ Sbjct: 521 GVVRNIRAAKNLIQKRTQKVWDILEHVVYAHPLLLNRAPTLHRLGIQAFEPILLSGRAIQ 580 Query: 449 LHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVL 508 LHPLVC A+NADFDGDQMAVH+PL+LEA+ EAR LM++T+N LSPA GEP I+PSQD++L Sbjct: 581 LHPLVCPAFNADFDGDQMAVHIPLSLEARAEARLLMLATHNWLSPATGEPSILPSQDMIL 640 Query: 509 GLYYMT 514 G YY+T Sbjct: 641 GFYYLT 646 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 68/170 (40%), Positives = 93/170 (54%), Gaps = 30/170 (17%) Query: 14 TEEFDAIKIALASPDMIRSWSF---------GEVKKPETINYRTFKPERDGLFCARIFGP 64 + + D I+I +ASP I WS GE+ K +TINYRTFKPERDGLFC RIFG Sbjct: 2 SHDIDYIQIQVASPKEIERWSLRVLPNNQLVGEITKADTINYRTFKPERDGLFCERIFGS 61 Query: 65 VKDYECLCGKYKRLK---------------------HRGVICEKCGVEVTQTKVRRERMG 103 + + EC CGK +R K G +C CGVE T +KVRR RMG Sbjct: 62 IVNNECSCGKTRRRKPLQKPGVIPLDEGTTFIANDDSAGYVCPTCGVEPTDSKVRRYRMG 121 Query: 104 HIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTN 153 I L P AH+W+ ++ P+ + +LL++ + +L+F+SY G+ N Sbjct: 122 CIRLRKPVAHLWYFRNTPNILSVLLNISAGQTDELLHFDSYTPSSAGVMN 171 >UniRef50_Q20EX2 DNA-directed RNA polymerase subunit beta' n=1 Tax=Oltmannsiellopsis viridis RepID=RPOC1_OLTVI Length = 1021 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 182/309 (58%), Positives = 242/309 (78%), Gaps = 10/309 (3%) Query: 213 KRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRV 272 +R K+ +R+KL+ F Q+ +P+WM+L+VLPVLPPDLRP++ ++G + A SDLN LY++V Sbjct: 553 QRTKVLRRLKLVRYFRQTNMRPQWMVLSVLPVLPPDLRPIIQMNGNQVAVSDLNKLYQKV 612 Query: 273 INRNNRLKRLLDLAAPDIIVRNEK------RMLQEAVDALLDNGRRGRA-ITGSNKRPLK 325 I RN +R+L A + N R+LQEAVDAL+ NG+ G A I+ +N RPLK Sbjct: 613 IFRN---QRMLRFARGQYTINNSPEMRYAGRLLQEAVDALIANGKGGGATISDANNRPLK 669 Query: 326 SLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKL 385 SL+DM+KGK+GRFRQNLLGKRVDYSGRSVI VGP L+LH+CGLPK+MA+ELF+PF+ +L Sbjct: 670 SLSDMLKGKKGRFRQNLLGKRVDYSGRSVIVVGPKLKLHECGLPKEMAIELFQPFLIRQL 729 Query: 386 ELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGK 445 +A TI AKK++ + ++W++L +V++ HP+LLNRAPTLHRLGIQAF+P L++G+ Sbjct: 730 RTNKIAATIVGAKKLIRSGDQIIWEVLKQVLQNHPILLNRAPTLHRLGIQAFQPKLVDGR 789 Query: 446 AIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQD 505 AI LHPLVC A+NADFDGDQMAVHVPL+ EA+ EA L+ + NNILSPA GEPI+ PSQD Sbjct: 790 AILLHPLVCPAFNADFDGDQMAVHVPLSYEARSEAWKLIWARNNILSPATGEPILTPSQD 849 Query: 506 VVLGLYYMT 514 ++LG YY+T Sbjct: 850 MILGCYYLT 858 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 51/131 (38%), Positives = 77/131 (58%), Gaps = 31/131 (23%) Query: 19 AIKIALASPDMIRSWS---------FGEVKKPETINYRTFKPERDGLFCARIFGPVKDYE 69 +I+I LASP+ IR W+ G+V P+T+NY+T KPE+ GLFC +IFG ++D Sbjct: 37 SIRIGLASPERIRQWAERVLPDGTVVGQVTNPQTVNYKTLKPEKGGLFCEQIFGSIQD-- 94 Query: 70 CLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLD 129 ++T T+ RR R+G+I+L SP H+W+LK+LPS I +LLD Sbjct: 95 --------------------TDLTTTRDRRSRLGYIQLVSPVTHVWYLKALPSYIAILLD 134 Query: 130 MPLRDIERVLY 140 +P + +E + Y Sbjct: 135 LPKKHVESISY 145 >UniRef50_D0EVW4 DNA-directed RNA polymerase n=1 Tax=Bryopsis hypnoides RepID=D0EVW4_9CHLO Length = 920 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 184/317 (58%), Positives = 248/317 (78%), Gaps = 12/317 (3%) Query: 206 NETNSETKRK-KLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSD 264 N NS K +L +R+K++ F Q+ NKP WMIL++LPVLPPDLRP++ L+ + A SD Sbjct: 110 NNVNSHFFEKIRLLQRLKIIRCFRQTKNKPAWMILSILPVLPPDLRPILQLNNDQIAISD 169 Query: 265 LNDLYRRVINRNNRLKRLLDLAAPDIIVRN------EKRMLQEAVDALLDNGRRG-RAIT 317 LN LY++V+ RN RL+RLL+ D+ ++N +R+LQE+VDAL++NG+ G + Sbjct: 170 LNKLYQKVLFRNRRLQRLLN----DLYIQNVDEMQYAQRLLQESVDALIENGKSGNQPAQ 225 Query: 318 GSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELF 377 SN RPLKSL+DM+KGK+GRFRQNLLGKRVDYSGRSVI VG L+L++CGLPK+MA+ELF Sbjct: 226 TSNNRPLKSLSDMLKGKKGRFRQNLLGKRVDYSGRSVIIVGSNLQLYECGLPKEMAIELF 285 Query: 378 KPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAF 437 +PF+ +L +R A TI AKK++++ A++W IL EV++ HP+LLNRAPTLHRL IQAF Sbjct: 286 QPFLLRRLIIRKKAKTILGAKKLIQQSNAIIWPILKEVLQSHPILLNRAPTLHRLSIQAF 345 Query: 438 EPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGE 497 +P LIEG+AI LHPLVC+++NADFDGDQMAVH+PL+ E++ EA L+ S NN +SPA G+ Sbjct: 346 QPKLIEGRAILLHPLVCSSFNADFDGDQMAVHIPLSFESRAEAWKLLWSLNNFISPATGQ 405 Query: 498 PIIVPSQDVVLGLYYMT 514 PI++PSQD+VLG Y+T Sbjct: 406 PILLPSQDMVLGSSYLT 422 Score = 278 bits (712), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 134/352 (38%), Positives = 216/352 (61%), Gaps = 14/352 (3%) Query: 591 IVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKK 650 ++ KK + ++L Y I G K T+ + + GF Y+ +SG S+G++D+ + KK Sbjct: 570 FFDRCFEKKRLKQLLIWFYHIEGEKNTLKLLENLKQLGFFYSTKSGLSIGLEDLQLNLKK 629 Query: 651 HEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRD 710 ++ + +E E+ +I+ +Q +T E ++++++IWA N+++ +++N Q + Sbjct: 630 SQLYNLSEFEIQQIELHYQKSNLTKLEYFHQLVEIWAKTNEKLKYQIINNFQLKN----- 684 Query: 711 GQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVL 770 N +++MA SGARG+ +Q+RQL GMRGLM+ P G I++ PI +NFREGL + Sbjct: 685 -------QLNPLFLMAFSGARGNISQVRQLVGMRGLMSDPTGQILDFPIRSNFREGLTLT 737 Query: 771 QYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGD 830 +Y IS +GARKG+ DTAL+TA SGYLTRRLVDVAQ +++ + DC I + ++ G Sbjct: 738 EYIISCYGARKGIVDTALRTATSGYLTRRLVDVAQHVIIEKQDCKNFYPIWVGNLLSGKK 797 Query: 831 VKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDT 890 + L+ R+LGR+ + + + +I + + L E + + +RS ++C + Sbjct: 798 ILLSLKQRLLGRILGKQIEIQQSKNIFFKNSEITVLMAAHLASE--FNKIPIRSPLTCIS 855 Query: 891 DFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAAS 942 +C +CYG +LA I++ GEA+GV+AAQSIGEPGTQLTMRTFH GG S Sbjct: 856 PKSICQYCYGWNLAMESIVSLGEAVGVLAAQSIGEPGTQLTMRTFHTGGVFS 907 >UniRef50_Q3ZJ92 DNA-directed RNA polymerase subunit beta' n=1 Tax=Pseudendoclonium akinetum RepID=RPOC1_PSEAK Length = 1578 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 189/305 (61%), Positives = 236/305 (77%), Gaps = 4/305 (1%) Query: 214 RKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVI 273 R K +R+K+L F S PEWM+L+VLP+LPP LRP++PLD + A SDLN LY+ V+ Sbjct: 1036 RSKALRRLKVLRPFKGSHVLPEWMVLSVLPILPPALRPIIPLDSQQVAVSDLNKLYQTVL 1095 Query: 274 NRNNRLKRLL-DLAAPDII--VRNEKRMLQEAVDALLDNGR-RGRAITGSNKRPLKSLAD 329 RN R++R D + + +R +R+LQEAVDAL++NG+ AIT SN RPLKSL+D Sbjct: 1096 FRNKRVQRFYNDYYSLNFSEEMRYAQRLLQEAVDALIENGKGDSAAITASNNRPLKSLSD 1155 Query: 330 MIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRG 389 MIKGK+GRFRQNLLGKRVDYSGRSVI VGP LRLH+CGLPK+MA+ELF+PF+ +L + Sbjct: 1156 MIKGKKGRFRQNLLGKRVDYSGRSVIVVGPKLRLHECGLPKEMAIELFQPFLIRRLIFKE 1215 Query: 390 LATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQL 449 +AT +AKK+++ + DIL EV+ PVLLNRAPTLHRLGIQAF+P LI G+AI L Sbjct: 1216 VATNFISAKKLIKSNPESILDILREVMENRPVLLNRAPTLHRLGIQAFQPKLISGRAILL 1275 Query: 450 HPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLG 509 HPLVCAA+NADFDGDQMAVH+PL+ +A EA LM S NN+LSPA GEPII+PSQD+VLG Sbjct: 1276 HPLVCAAFNADFDGDQMAVHIPLSFQACAEAWKLMGSRNNLLSPATGEPIILPSQDMVLG 1335 Query: 510 LYYMT 514 YY+T Sbjct: 1336 CYYLT 1340 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 59/135 (43%), Positives = 84/135 (62%), Gaps = 14/135 (10%) Query: 4 LLKFLKAQ----TKTEEFDAIKIALASPDMIRSWS---------FGEVKKPETINYRTFK 50 LLK LK + T+ ++ + ++ L+SP +I+ W+ G + +T+NY+T K Sbjct: 22 LLKILKGEVSETTELKKLHSFRLCLSSPKIIKQWAQRTLPNGEIVGSITNAQTVNYKTLK 81 Query: 51 PERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASP 110 PE+ GLFC R+FGPVKD+ C CGK K +H V C CGV+ ++ RR +MG+IEL SP Sbjct: 82 PEKGGLFCERVFGPVKDFYCSCGKQKTKQHPKV-CPTCGVQYISSQSRRYKMGYIELVSP 140 Query: 111 TAHIWFLKSLPSRIG 125 HIW+LKS PS I Sbjct: 141 VTHIWYLKSSPSYIS 155 >UniRef50_C7BEK7 DNA-directed RNA polymerase n=2 Tax=Chlorophyta RepID=C7BEK7_PEDMN Length = 712 Score = 388 bits (997), Expect = e-106, Method: Compositional matrix adjust. Identities = 205/410 (50%), Positives = 274/410 (66%), Gaps = 22/410 (5%) Query: 151 MTNLERQQI-LTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETN 209 +T L+ ++ L +YL L+E D + + +I+ LL LR L Sbjct: 253 LTQLDLNRLELVLRRYLPILQEEIDVLEPSYASLSIEQLL----------HLRYLL---- 298 Query: 210 SETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLY 269 T R ++ +RIK++ F +S KPEWM+L++LPVLPPDLRP++ + + A SDLN LY Sbjct: 299 --TARARILRRIKIVRNFRKSKAKPEWMLLSILPVLPPDLRPIIEMGKNQVAVSDLNKLY 356 Query: 270 RRVINRNNRL---KRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRG-RAITGSNKRPLK 325 ++V+ RN R+ KR+ +R +R+LQE+VDALL+NGR G IT N RPLK Sbjct: 357 QKVLFRNQRVIRHKRIGSSLNKSNEMRYAQRLLQESVDALLENGRGGSEPITAPNGRPLK 416 Query: 326 SLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKL 385 SL+DM+KGK+GRFRQNLLGKRVDYSGRSVI VGP L+LH+CGLP++MALELF+PF+ +L Sbjct: 417 SLSDMLKGKKGRFRQNLLGKRVDYSGRSVIVVGPSLKLHECGLPREMALELFQPFLIRRL 476 Query: 386 ELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGK 445 + T+ AKK++ ++ ++W IL VI HP+LLNRAPTLHRLGIQAF+P LI G+ Sbjct: 477 IRTKIVRTVLGAKKLIAFQDPIIWQILQNVIENHPILLNRAPTLHRLGIQAFQPKLILGR 536 Query: 446 AIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQD 505 AI LHPLVCAA+NADFDGDQMAVHVPL+L+A+ EA LM S NN+LSPA G+PI+ PSQD Sbjct: 537 AILLHPLVCAAFNADFDGDQMAVHVPLSLQARAEAFKLMWSRNNLLSPATGQPILGPSQD 596 Query: 506 VVLGLYYM-TRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITE 554 +VLG YY+ T + N + E Y +H V V+ ++ Sbjct: 597 MVLGCYYLTTENQKNLSSNASLFYSFDEVLDAYYQKTLPIHTYVWVKCSD 646 Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 54/132 (40%), Positives = 81/132 (61%), Gaps = 11/132 (8%) Query: 18 DAIKIALASPDMIRSWS---------FGEVKKPETINYRTFKPERDGLFCARIFGPVKDY 68 +++++++ASP+ IR W+ G+V +T+NY+T KPE GLFC IFGP+ D+ Sbjct: 14 ESLRLSIASPERIRRWAERTLPSGKIVGQVLNSQTLNYKTLKPELGGLFCETIFGPIYDF 73 Query: 69 ECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLL 128 C CGK R C CGVE T +++RR R+G+I LASP AH+W+ K PS + L+ Sbjct: 74 RCACGKAPMKDFR--YCPDCGVEFTSSRIRRYRLGYISLASPVAHVWYFKGSPSYVAHLI 131 Query: 129 DMPLRDIERVLY 140 + R + +LY Sbjct: 132 GLKKRTVSALLY 143 >UniRef50_Q06SJ9 DNA-directed RNA polymerase n=1 Tax=Stigeoclonium helveticum RepID=Q06SJ9_STIHE Length = 2113 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 188/356 (52%), Positives = 255/356 (71%), Gaps = 17/356 (4%) Query: 220 RIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRL 279 +I L +F++ +PEWM+L++LPVLPPDLRP++ + G + A+SDLN LY++V+ RN RL Sbjct: 1708 KITNLRSFLKES-RPEWMVLSLLPVLPPDLRPILQI-GNQVASSDLNRLYQKVLYRNERL 1765 Query: 280 KRLL----DLAAPDIIVRNEKRMLQEAVDALLDNGR-RGRAITGSNKRPLKSLADMIKGK 334 KR L +P + + R+LQEAVD L+DNG+ +G A T + PLKSL +++KGK Sbjct: 1766 KRFLKDSTSTNSPQM--KFAYRLLQEAVDNLIDNGKGKGNAETDNRGLPLKSLTELLKGK 1823 Query: 335 QGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI 394 +GRFRQNLLGKRVDYSGRSVI VGP LRLH+CGLPK+MA+ELF PF+ K+ G A+TI Sbjct: 1824 KGRFRQNLLGKRVDYSGRSVIVVGPRLRLHECGLPKEMAIELFMPFLIQKIFQSGKASTI 1883 Query: 395 KAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVC 454 AKK+++ + W+ L+ V+RE+PVLLNRAPTLHR G QAF+P L+EGKAI LHPLVC Sbjct: 1884 LGAKKILQNDSNRTWEFLNMVLRENPVLLNRAPTLHRFGFQAFQPRLVEGKAILLHPLVC 1943 Query: 455 AAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT 514 A+NADFDGDQMAVHVP+T+EA++EA +M++ N++LS A GE I+VPSQD+VLG YY+T Sbjct: 1944 PAFNADFDGDQMAVHVPITVEAKVEAWKIMLARNHLLSAATGEVILVPSQDMVLGSYYLT 2003 Query: 515 RDCVNAKGEGMVLTGP-------KEAERLYRSGLASLHARVKVRIT-EYEKDANGE 562 + + L +E R Y S SLH+ + +R +++ + N E Sbjct: 2004 AKNPKFYEKRLFLHQYNYIFGTIEEVLRAYESQKISLHSIIWLRWNHKFQTNVNNE 2059 Score = 113 bits (282), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 60/161 (37%), Positives = 87/161 (54%), Gaps = 18/161 (11%) Query: 13 KTEEFDAIKIALASPDMIRSWS---------FGEVKKPETINYRTFKPERDGLFCARIFG 63 K +E I + LASPD +R W+ G V T+++ T KP + GLFC RIFG Sbjct: 10 KFKEVKLITLRLASPDTVRGWAETRLPDGKILGIVYNANTLHHNTLKPLKGGLFCERIFG 69 Query: 64 PVKDYECLCG----KYKRLKHRG-VICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLK 118 PVKD++C CG K + H C KC VE T + RR ++G+I L SP H+W++K Sbjct: 70 PVKDFQCACGIQKDKSLSINHSTRQFCLKCNVEYTWSLKRRYQLGYIRLVSPVTHLWYVK 129 Query: 119 SLPSRIGLLLDMPLRDIERVLYFESYVVIE----GGMTNLE 155 PS I ++LDM + ++ + Y + I+ G NL+ Sbjct: 130 ESPSFIAVMLDMKRKTLDYITYCTYTLTIDSIWKSGTNNLK 170 >UniRef50_Q32RY3 DNA-directed RNA polymerase subunit beta' n=1 Tax=Staurastrum punctulatum RepID=RPOC1_STAPU Length = 834 Score = 361 bits (926), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 174/308 (56%), Positives = 227/308 (73%), Gaps = 4/308 (1%) Query: 211 ETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYR 270 + +++ + + K++ +QS +PEWM+L+VLPVLPPDLRP+V L G+ TSDLN+LYR Sbjct: 353 QREKRLIIRSSKIIRDLIQSKTQPEWMVLSVLPVLPPDLRPIVELREGQLITSDLNELYR 412 Query: 271 RVINRNNRLKRLLD----LAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKS 326 +V+ RN L L L ++ R ++ LQ AVDALL NG NKR KS Sbjct: 413 KVLFRNEDLSIWLSYQGTLVLSGLLARLQRASLQRAVDALLANGMGSSTFRDYNKRAYKS 472 Query: 327 LADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLE 386 + +IKGK+GRFR+NLLGKRVDYSGRSVI VGP L LH+CGLP++MALELF+PFI +L Sbjct: 473 FSALIKGKKGRFRENLLGKRVDYSGRSVIVVGPLLALHECGLPREMALELFQPFIIRELI 532 Query: 387 LRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKA 446 R LA ++AAK M++ +E ++W +L +++ VLLNRAPTLHRLGIQAF+PVL+ +A Sbjct: 533 TRQLAPNLRAAKSMIQNKEPIIWKVLQVIVQNRLVLLNRAPTLHRLGIQAFQPVLVGERA 592 Query: 447 IQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDV 506 I LHPLVCA +NADFDGDQMAVHVPL+ EAQ+EAR LM S +N+LSPA G + VPSQD+ Sbjct: 593 ILLHPLVCAGFNADFDGDQMAVHVPLSWEAQVEARILMWSPSNLLSPATGRAVAVPSQDM 652 Query: 507 VLGLYYMT 514 +LGLY +T Sbjct: 653 LLGLYVLT 660 Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 71/146 (48%), Positives = 100/146 (68%), Gaps = 11/146 (7%) Query: 20 IKIALASPDMIRSWS---------FGEVKKPETINYRTFKPERDGLFCARIFGPVKDYEC 70 ++I LASP+ IR+W+ G V KP TI+Y+T KPE+DGLFC RIFGP+K C Sbjct: 42 LRIGLASPEQIRNWAERILPNGEIVGRVLKPHTIHYQTHKPEKDGLFCERIFGPIKSGFC 101 Query: 71 LCGKYK--RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLL 128 CGKYK R CE+CGVE+T+++VRR RMG+I+L+SP H+W+LK+ PS I LL Sbjct: 102 SCGKYKGTRDNDSPPFCEQCGVELTESRVRRHRMGYIQLSSPVTHVWYLKNRPSVISHLL 161 Query: 129 DMPLRDIERVLYFESYVVIEGGMTNL 154 +MPL+D+E ++Y S+++ G + Sbjct: 162 EMPLKDVESLVYCGSFIIGPGTYSKF 187 >UniRef50_B8R1B0 DNA-directed RNA polymerase n=2 Tax=Volvox carteri RepID=B8R1B0_VOLCA Length = 2094 Score = 360 bits (924), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 188/372 (50%), Positives = 252/372 (67%), Gaps = 13/372 (3%) Query: 237 MILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAA--PDIIVRN 294 MILT+LPVLPP LRP++ + G+F SDLN LY+R+I RN RLK+ L A ++ Sbjct: 1640 MILTLLPVLPPVLRPVLKM-AGQFTISDLNRLYQRIIYRNERLKKFLKDPALSSSFEMKY 1698 Query: 295 EKRMLQEAVDALLDNGRRGRAITGSNK-RPLKSLADMIKGKQGRFRQNLLGKRVDYSGRS 353 +R+LQEAVD L+ NG+ G + R LKSL+D++KGKQGRFRQ LLGKRVDYSGRS Sbjct: 1699 AQRLLQEAVDNLIQNGKSGVVPEKDARGRLLKSLSDILKGKQGRFRQYLLGKRVDYSGRS 1758 Query: 354 VITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILD 413 VI VGP L+LH+CG+PK+MAL L+ PF+ ++ LA T AAKK+++ +V +L Sbjct: 1759 VIVVGPRLKLHECGIPKEMALVLYSPFLIKRILNEKLADTYLAAKKLIKTNSLLVSQLLR 1818 Query: 414 EVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLT 473 E++R PVLLNRAPTLHRLG QAF+P L++GKAI LHPLVC A+NADFDGDQMAVH+P+T Sbjct: 1819 EIMRSCPVLLNRAPTLHRLGFQAFQPKLVDGKAILLHPLVCPAFNADFDGDQMAVHIPIT 1878 Query: 474 LEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCV-----NAKGEGMVLT 528 EA+ EA LM++ NN+LSPA G+PII+PSQD+VLG YY+T +C + KG GM Sbjct: 1879 FEARTEAWKLMLARNNLLSPATGDPIILPSQDMVLGCYYLTTNCSEKWSKSKKGSGMHFH 1938 Query: 529 GPKEAERLYRSGLASLHARVKVRITEYEKDANG---ELVAKTSLKDTTVGRAIL-WMIVP 584 + + Y L +HA + V +T + ++ N L + +L V + I + I Sbjct: 1939 NINDVLKAYYQQLIHIHAIIWVNLTGHIENTNTLEQPLEIRITLAQFKVNKHIKEFKISQ 1998 Query: 585 KGLPYSIVNQAL 596 + L Y++ Q L Sbjct: 1999 RDLGYALSQQGL 2010 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 64/176 (36%), Positives = 97/176 (55%), Gaps = 31/176 (17%) Query: 7 FLKAQTKTEEFDAIKIALASPDMIRSWS---------FGEVKKPETINYRTFKPERDGLF 57 F + +K E + + I+LAS + IR W+ GEV PET++Y+T KP + GLF Sbjct: 301 FQSSYSKIMEINLLTISLASANRIRQWAEKTLPNGKVVGEVINPETVHYKTLKPIKGGLF 360 Query: 58 CARIFGPVKDYECLCGKYKRLKH----------------------RGVICEKCGVEVTQT 95 C RIFGP+KD+EC CGK +K+ + C C VE T + Sbjct: 361 CERIFGPLKDHECACGKKFNIKNYISKITKKESTLFENNLVNKLQKRYFCRVCDVEYTYS 420 Query: 96 KVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGM 151 +RR ++G I+LASPT H+WF+K +PS IG+LLD+ + ++ + Y + + +E Sbjct: 421 IIRRTQLGFIQLASPTTHVWFVKGIPSYIGILLDLKKKHLQNITYNTAILTLEHAF 476 >UniRef50_B2X2C0 DNA-directed RNA polymerase n=3 Tax=Viridiplantae RepID=B2X2C0_CHLMO Length = 2262 Score = 353 bits (906), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 175/312 (56%), Positives = 231/312 (74%), Gaps = 4/312 (1%) Query: 213 KRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRV 272 +R ++ KL+ + + + IL+ LPVLPP+LRP+V + G + A+SDLN LY+RV Sbjct: 1849 RRFFFVRKAKLVRTLFKKESYLQETILSYLPVLPPELRPIVKM-GNQIASSDLNRLYQRV 1907 Query: 273 INRNNRLKRLLDLAAPD--IIVRNEKRMLQEAVDALLDNGRRGRA-ITGSNKRPLKSLAD 329 I RN+RLK+ L A ++ +R+LQEAVD L+ N G A S R LKSL+D Sbjct: 1908 IYRNDRLKKFLKDPATSHSFEMKYAQRLLQEAVDNLIQNSNNGMAGEKDSRGRLLKSLSD 1967 Query: 330 MIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRG 389 IKGKQGRFRQ LLGKRVDYSGRSVI VGP L+LH+CGLPK+MALEL+ PF+ ++ Sbjct: 1968 NIKGKQGRFRQYLLGKRVDYSGRSVIVVGPKLKLHECGLPKEMALELYLPFLLKRILNEN 2027 Query: 390 LATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQL 449 LA T+ AK +++ ++W++L E+++ PVLLNRAPTLHRLGIQAF+P LIEG+AI L Sbjct: 2028 LARTVVGAKTLIKTNPPLIWELLREIMQTCPVLLNRAPTLHRLGIQAFQPKLIEGRAILL 2087 Query: 450 HPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLG 509 HPLVC+A+NADFDGDQMAVHVP+T+EA+ EA LM+S NNILSPA G+P+ +PSQD++LG Sbjct: 2088 HPLVCSAFNADFDGDQMAVHVPITVEARAEAWKLMLSRNNILSPATGDPLAIPSQDMLLG 2147 Query: 510 LYYMTRDCVNAK 521 YY+T + +N K Sbjct: 2148 CYYLTINLLNRK 2159 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 62/119 (52%), Gaps = 11/119 (9%) Query: 2 KDLLKFLKAQTKTEEFDAIKIALASPDMIRSWS---------FGEVKKPETINYRTFKPE 52 K+ F + +K E I I A+P I+ W+ +GEV T++Y+TFKP+ Sbjct: 17 KNTKNFYTSYSKLSEIRLITIGYATPSCIKKWAEKTLPNGKIYGEVLNANTLHYKTFKPQ 76 Query: 53 RDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPT 111 + GLFC RIFGP+K++EC CG K LK + + +K + +K + L PT Sbjct: 77 KGGLFCERIFGPLKNFECACG--KTLKTKKNLLQKKNALLNTSKSYVNTQSVLTLKPPT 133 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 42/68 (61%) Query: 84 ICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFES 143 CE C VE T + +RR ++G+I+L SP HIW+LK +PS + +LL M R +E ++Y Sbjct: 179 FCETCDVEYTWSVIRRYQLGYIKLVSPIIHIWYLKGMPSYLSILLQMKRRALESIIYCSK 238 Query: 144 YVVIEGGM 151 IE + Sbjct: 239 TSSIEYAL 246 >UniRef50_Q1KVT3 DNA-directed RNA polymerase subunit beta' n=1 Tax=Scenedesmus obliquus RepID=RPOC1_SCEOB Length = 1529 Score = 353 bits (906), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 175/339 (51%), Positives = 242/339 (71%), Gaps = 5/339 (1%) Query: 194 LEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLV 253 L+Q + ++ L KR+++ +R+K L F + + P +MIL LPVLPPDLRP++ Sbjct: 1060 LKQNAKTKKDSLKIQKYFQKREQIIRRLKFLRKFSRRNSNPTFMILKNLPVLPPDLRPIL 1119 Query: 254 PLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPD--IIVRNEKRMLQEAVDALLDNGR 311 L + A SDLN Y+R+I RN+RLK+ +A + ++ +R+LQEAVD L+ NG+ Sbjct: 1120 KLQN-QIAASDLNRFYQRIIYRNDRLKKFAKDSATNQSFEIKYAQRLLQEAVDNLIQNGK 1178 Query: 312 RG-RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPK 370 +A T S +PLKSL++++KGKQGRFRQ LLGKRVDYSGRSVI VGP L+L++CGLPK Sbjct: 1179 GSVKAETNSRGQPLKSLSEILKGKQGRFRQYLLGKRVDYSGRSVIVVGPELKLYECGLPK 1238 Query: 371 KMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLH 430 +MALELF PF+ + LA T+ AK +++ + + +L +VI+ P+LLNRAPTLH Sbjct: 1239 EMALELFLPFLIQYILQNKLAQTVVGAKNLLKSDSNLTLHLLHKVIKNIPILLNRAPTLH 1298 Query: 431 RLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNI 490 RLG QAF P LIEG+AI LHP+VC ++NADFDGDQMAVH+PLT+EA+ EA M++TNN+ Sbjct: 1299 RLGFQAFLPKLIEGRAILLHPMVCPSFNADFDGDQMAVHIPLTVEARTEAWKFMLATNNL 1358 Query: 491 LSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTG 529 ++ A GE II+PSQD+VLG YY+T D +K G+ L+ Sbjct: 1359 MNSATGEAIILPSQDMVLGCYYLTLD-FQSKFVGVQLSN 1396 Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 66/177 (37%), Positives = 97/177 (54%), Gaps = 21/177 (11%) Query: 6 KFLKAQTKTEEFDAIKIALASPDMIRSWS---------FGEVKKPETINYRTFKPERDGL 56 K L +K E + I LASP+ I++W+ FGEV T +YRTFKP + GL Sbjct: 83 KLLNGYSKIHELKLVTIELASPEKIKAWAEKELPNGKIFGEVTNANTFHYRTFKPSKGGL 142 Query: 57 FCARIFGPVKDYECLCGKYKR---------LKHRGV---ICEKCGVEVTQTKVRRERMGH 104 FC IFGP+KD+EC CGK +R L+H+ C C VE T + +RR ++G+ Sbjct: 143 FCEHIFGPLKDFECACGKRQRPSALESRKILEHQKTSRYFCPNCDVEYTWSIIRRYQLGY 202 Query: 105 IELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILT 161 I+L +P H+W+ K+ PS + +L DM R +E ++Y + IE ++ IL Sbjct: 203 IKLNAPVTHLWYFKTNPSYLSILFDMKRRHLESIIYCTETITIENTWKYSQQTSILN 259 >UniRef50_D0FXV5 DNA-directed RNA polymerase n=1 Tax=Dunaliella salina RepID=D0FXV5_DUNSA Length = 1803 Score = 352 bits (904), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 182/346 (52%), Positives = 240/346 (69%), Gaps = 9/346 (2%) Query: 213 KRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRV 272 KR L +R KL+ + + P MILTVLPVLPPDLRP+V + GG+ A SDLN Y+RV Sbjct: 1397 KRDLLIRRTKLVRKLFRKDSDPSSMILTVLPVLPPDLRPIVKM-GGQIAASDLNRFYQRV 1455 Query: 273 INRNNRLKRLL-DLAAPDII-VRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADM 330 I RN+RLK+ L D A + ++ +R+LQEAVD L+ N + S R LKSL+D+ Sbjct: 1456 IYRNDRLKKFLKDPATSNSYEMKYAQRLLQEAVDNLIQNSQSS-GEKDSRGRALKSLSDI 1514 Query: 331 IKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGL 390 +KGKQGRFRQ LLGKRVDYSGRSVI VGP L+L+QCG+P +MALEL+ PF+ + + Sbjct: 1515 LKGKQGRFRQFLLGKRVDYSGRSVIVVGPKLKLYQCGIPVEMALELYLPFLLKIILNKNY 1574 Query: 391 ATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLH 450 A T+ AK +++ + ++L E+++ PVLLNRAPTLHRLG QAF P L+EG+AI LH Sbjct: 1575 AKTVVGAKALIKNNRPLALELLREIMQVSPVLLNRAPTLHRLGFQAFVPKLVEGRAILLH 1634 Query: 451 PLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGL 510 PLVC+++NADFDGDQMAVHVP+T+EA+ EA LM+S NN+LSPA G+P+ +PSQD+VLG Sbjct: 1635 PLVCSSFNADFDGDQMAVHVPITIEARAEAWKLMLSRNNMLSPATGDPLSIPSQDMVLGC 1694 Query: 511 YYMTRDCVNA-----KGEGMVLTGPKEAERLYRSGLASLHARVKVR 551 YY+T + A +G G T ++ Y LHA V V+ Sbjct: 1695 YYLTTNSNKATLSLLRGSGFFFTDLQKVLYQYDLQQIDLHALVWVK 1740 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/208 (25%), Positives = 81/208 (38%), Gaps = 75/208 (36%) Query: 10 AQTKTEEFDAIKIALASPDMIRSWS---------FGEVKKPETINYRTFKPERDGLF--- 57 + +K E + I +ASP I W+ +GEV T++++TFKP++ GLF Sbjct: 119 SYSKFTEVKLVTIGIASPLRILQWAEKTLPNGKIYGEVLNANTLHHKTFKPQKGGLFCER 178 Query: 58 -----------CARI--------------------------------------------- 61 C +I Sbjct: 179 IFGPLKDFECSCGKIDKTAKYSLQKTEQKPDEPARNNKNLLEETIQDNNKNKPKKSLGEL 238 Query: 62 -FGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120 FG KD K ++ C C VE T + +RR ++G+I+L SP H+WFLK Sbjct: 239 SFGITKDKSKTTRKLRKF------CPDCDVEYTWSVIRRYQLGYIKLISPVTHVWFLKGT 292 Query: 121 PSRIGLLLDMPLRDIERVLYFESYVVIE 148 PS + +LLD+ R ++ + Y + IE Sbjct: 293 PSYLSILLDIKKRFLQSITYCSETLTIE 320 >UniRef50_C0JWJ6 DNA-directed RNA polymerase n=1 Tax=Monomastix sp. OKE-1 RepID=C0JWJ6_MONSK Length = 1166 Score = 350 bits (897), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 177/326 (54%), Positives = 229/326 (70%), Gaps = 24/326 (7%) Query: 213 KRKKLTKRIKLLEAFVQSGNKPEW--MILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYR 270 +RKK + +KLL +G + I T LPVLPP+LRP+V L G+FA+SD+NDLYR Sbjct: 563 RRKKRVRTLKLLNLLRTAGGAQSFDGFIFTTLPVLPPELRPIVQLSAGQFASSDVNDLYR 622 Query: 271 RVINRNNRLKRLLDLAAP---DIIVRNEKRMLQEAVDALLDNG----------RRGRAIT 317 R+I+RNNRLK P + +VR+E+ ++Q AVD+LLD R + + Sbjct: 623 RLISRNNRLKYYFTACGPHLVEFLVRSEQHLVQVAVDSLLDGSSAASEIGSLRRMSNSGS 682 Query: 318 GSNKRPL---------KSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGL 368 G +PL KSL+D I GKQGRFRQNLLGKRVDYSGRSVI VGP L+LH+CGL Sbjct: 683 GGGNKPLTKGSNLPVYKSLSDRIGGKQGRFRQNLLGKRVDYSGRSVIVVGPRLKLHECGL 742 Query: 369 PKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPT 428 P +MALELF+ F+ + LA TI+ AK +++ + IL V++ HP+LLNRAPT Sbjct: 743 PYEMALELFQAFVIRHILELQLAKTIRGAKNLLKLNKPFARQILQNVVQSHPILLNRAPT 802 Query: 429 LHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTN 488 LHRLGIQAF+P LI G+AIQLHPLVC+A+NADFDGDQMAVHVPL+ +A++EAR LM++T Sbjct: 803 LHRLGIQAFQPKLIYGRAIQLHPLVCSAFNADFDGDQMAVHVPLSPKARVEARLLMLATT 862 Query: 489 NILSPANGEPIIVPSQDVVLGLYYMT 514 N LS A G+P ++PSQD+VLG YY+T Sbjct: 863 NWLSAATGQPSVLPSQDMVLGFYYLT 888 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 38/69 (55%), Positives = 48/69 (69%), Gaps = 12/69 (17%) Query: 20 IKIALASPDMIRSWS------------FGEVKKPETINYRTFKPERDGLFCARIFGPVKD 67 ++I LAS + I+SW+ GEVKK +TINYR+FKPE+DGLFC RIFGPVKD Sbjct: 5 MQIGLASSEEIQSWAERSLWLDGNEIKIGEVKKADTINYRSFKPEKDGLFCERIFGPVKD 64 Query: 68 YECLCGKYK 76 + C CG+ K Sbjct: 65 WVCACGQSK 73 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 41/61 (67%) Query: 84 ICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFES 143 IC C VEVT ++VRR RMG+IEL P HIW+L S P+ +LL +P + ++++ Y+ Sbjct: 209 ICPNCQVEVTLSRVRRYRMGYIELGCPVTHIWYLNSRPNIFSVLLKIPTKYVKKITYYRG 268 Query: 144 Y 144 Y Sbjct: 269 Y 269 >UniRef50_B2X1Z3 DNA-directed RNA polymerase subunit beta' n=103 Tax=Viridiplantae RepID=RPOC1_OEDCA Length = 1947 Score = 347 bits (889), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 169/303 (55%), Positives = 225/303 (74%), Gaps = 4/303 (1%) Query: 215 KKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVIN 274 K + +++K + KPE+MI+ LPVLP DLRP+ + + SDLN LY++VI Sbjct: 1531 KSILRKLKYIRRLNWVSAKPEYMIIRNLPVLPADLRPIFKIQQ-QLTASDLNRLYQKVIY 1589 Query: 275 RNNRLKRLL--DLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAI-TGSNKRPLKSLADMI 331 RN+RLKR L + + +RMLQEAVD L++NG+ +I T S RPLKSL +++ Sbjct: 1590 RNDRLKRFLKNSTTSNSFEMLFAQRMLQEAVDNLIENGKDINSIETDSRGRPLKSLGELL 1649 Query: 332 KGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLA 391 KGK+GRFRQNLLGKRVDYSGRSVI VGP L+LH+CGLP +MA+ELF PF+ ++ A Sbjct: 1650 KGKKGRFRQNLLGKRVDYSGRSVIVVGPKLKLHECGLPIEMAIELFLPFLIKEILKNKYA 1709 Query: 392 TTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHP 451 T+++AK +++ + +L +V++ P+LLNRAPTLHRLGIQAF P L+EGKAI LHP Sbjct: 1710 LTVRSAKIYIKKHRIKITQLLRQVVKRQPILLNRAPTLHRLGIQAFLPKLVEGKAILLHP 1769 Query: 452 LVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLY 511 LVC+A+NADFDGDQMAVHVP+T EA++EA L++S NN+LSPA GEPI++PSQD+VLG Y Sbjct: 1770 LVCSAFNADFDGDQMAVHVPITNEARIEAWKLVLSRNNLLSPATGEPILLPSQDMVLGCY 1829 Query: 512 YMT 514 Y+T Sbjct: 1830 YLT 1832 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 63/161 (39%), Positives = 91/161 (56%), Gaps = 17/161 (10%) Query: 6 KFLKAQTKTEEFDAIKIALASPDMIRSWS---------FGEVKKPETINYRTFKPERDGL 56 KFL + K E I I LASP+ I+ W+ FG+V P T++Y+T KP + GL Sbjct: 47 KFL-SSYKFSEIQLITIDLASPEKIKEWAEKKLPNGKIFGQVTNPNTLHYKTLKPLKGGL 105 Query: 57 FCARIFGPVKDYECLCGKYKRLKHRGVI-------CEKCGVEVTQTKVRRERMGHIELAS 109 FC RIFGP+KD+EC CG K+ +I C KC +E T + +RR ++G+I+L + Sbjct: 106 FCERIFGPIKDFECACGIQKQKPFNRIISFQNKQFCSKCDIEYTWSDIRRYQLGYIQLVT 165 Query: 110 PTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGG 150 P H+W+LK +PS I +L + IE + Y V I+ Sbjct: 166 PVTHLWYLKGMPSYIRSVLGAKKKHIEAIAYCSEIVTIDQA 206 >UniRef50_Q110H3 DNA-directed RNA polymerase subunit beta' n=5 Tax=Cyanobacteria RepID=RPOC2_TRIEI Length = 1415 Score = 338 bits (868), Expect = 7e-91, Method: Compositional matrix adjust. Identities = 189/477 (39%), Positives = 285/477 (59%), Gaps = 34/477 (7%) Query: 593 NQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHE 652 N+ + K + K+++ + G T A+++ GF YA ++G S+ +DD+ +P K + Sbjct: 5 NRVINKGQLKKLISWSFNNYGTAITAQMANKLKDLGFRYATKAGVSISVDDLQVPPSKRQ 64 Query: 653 IISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQ 712 ++ EAE E+ E++ G +T ER+ KVID W + ++ NL+ E V N Sbjct: 65 LLDEAEQEIRNTTERYTKGKITEVERFQKVIDTWNSTSE--------NLKNEVVRNFRST 116 Query: 713 EEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQY 772 + NS+YMMA SGARG+ +Q+RQL GMRGLMA P G II+ PI NFREGL V +Y Sbjct: 117 D----PLNSVYMMAFSGARGNISQVRQLVGMRGLMADPQGEIIDLPIKTNFREGLTVTEY 172 Query: 773 FISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVK 832 IS++GARKGL DTAL+TA+SGYLTRRLVDV+QD++V E DCGT G+M+T + +G V Sbjct: 173 IISSYGARKGLVDTALRTADSGYLTRRLVDVSQDVIVREADCGTKRGVMVTSMKDGDRVL 232 Query: 833 EPLRDRVLGRVTAEDVLKPGTADILVP------RNTLLHEQWCDLLEENSVDAVKVRSVV 886 P++DR+LGRV A+DV P T +I+ +N +L E + + V+ V VRS + Sbjct: 233 IPVKDRLLGRVLADDVKDPKTGEIVTQGHIQAVKNQVLTEDLAKAIGKAGVENVFVRSPL 292 Query: 887 SCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAA 946 +C++ VC CYG LA GH+++ GEAIG+IAAQSIGEPGTQLTMRTFH GG + A Sbjct: 293 TCESPRSVCQTCYGWSLAHGHMVDMGEAIGIIAAQSIGEPGTQLTMRTFHTGGVFTGEVA 352 Query: 947 ESSIQVKNKGSIKL-SNVKS---VVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAV 1002 + G +K SNV++ + +I N ++ ++ GR KE+ + G++ Sbjct: 353 RQFV-ASFGGVVKYPSNVRTRSFRTRHGDEAMIAENNFDMIILGVDGR-KETIPIAQGSI 410 Query: 1003 LAKGDGEQVAGGETVA----------NWDPHTMPVITEVSGFVRFTDMIDGQTITRQ 1049 L + +QV+ G +A + T V ++++G ++F ++ + + +Q Sbjct: 411 LMVQNNQQVSAGIVLAEVPKVGQVRKTTEKVTKEVASDLAGELKFAQLVQEEKVDKQ 467 Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 128/290 (44%), Positives = 166/290 (57%), Gaps = 22/290 (7%) Query: 1099 YFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAE 1158 Y + A++ DG + GD L + E T DI GLPR+ +L EAR+PKE IL + Sbjct: 1001 YRVSTGAVLLTMDGDLVQRGDILVLLVFERTKTGDIIQGLPRIEELLEARKPKESCILVK 1060 Query: 1159 ISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVF--EGERVERGDVISDGPEA 1216 G V++ SD P NV +G+ V G+ ++DGP+ Sbjct: 1061 YPGQAQVNVNDDNVEVSVVS----SDGTITDYPLGHGQNVIVADGQNVNVGEALTDGPQN 1116 Query: 1217 PHDILR----------------LRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM 1260 PH+IL LR A R++VN+VQ VY+ QG+ I+DKHIEVIVRQM Sbjct: 1117 PHEILETFFNYYREHESAYEACLRSFEACQRFLVNQVQAVYQSQGIDISDKHIEVIVRQM 1176 Query: 1261 LRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFI 1320 K I + G + L GE +E +V+ N + G A Y+ LLGITKASL T+SFI Sbjct: 1177 TAKVRIDDGGDTTMLPGELIELRQVEQVNEAMSITGGATAQYTPMLLGITKASLNTDSFI 1236 Query: 1321 SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRM 1370 SAASFQETTRVLTEAA+ GK D LRGLKENVI+GRLIPAGTG+ ++D + Sbjct: 1237 SAASFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLIPAGTGFNAYEDAL 1286 >UniRef50_P22705 DNA-directed RNA polymerase subunit beta' n=8 Tax=Cyanobacteria RepID=RPOC2_ANASP Length = 1355 Score = 337 bits (865), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 194/487 (39%), Positives = 282/487 (57%), Gaps = 44/487 (9%) Query: 593 NQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHE 652 N+ + K + +++ + G T + AD++ GF YA R+G S+ +DD+++P K Sbjct: 10 NRVVDKGQLRNLISWAFTHYGTARTAVMADKLKDLGFRYATRAGVSISVDDLMVPPSKRS 69 Query: 653 IISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQ 712 ++ AE E+ + ++Q G +T ER+ KVID W + S+A+ D + T Sbjct: 70 LLEAAEEEIRATEVRYQRGEITEVERFQKVIDTW----NGTSEALKDEVVTHF------- 118 Query: 713 EEKQVS-FNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQ 771 KQ + NS+YMMA SGARG+ +Q+RQL GMRGLMA P G II+ PI NFREGL V + Sbjct: 119 --KQTNPLNSVYMMAFSGARGNISQVRQLVGMRGLMADPQGEIIDLPIKTNFREGLTVTE 176 Query: 772 YFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDV 831 Y IS++GARKGL DTAL+TA+SGYLTRRLVDV+QD+++ E DCGT GI + P+ EG Sbjct: 177 YIISSYGARKGLVDTALRTADSGYLTRRLVDVSQDVIIREIDCGTTRGIPVRPMTEGSKT 236 Query: 832 KEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTD 891 L R+LGRV EDV+ P T +++ PRNT + + +E+ V V VRS ++C+ Sbjct: 237 LIKLSTRLLGRVVGEDVIHPKTKEVIAPRNTPISDDLAKEIEKAGVAEVVVRSPLTCEAA 296 Query: 892 FGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQ 951 VC HCYG LA +++ GEA+G+IAAQSIGEPGTQLTMRTFH GG + A+ ++ Sbjct: 297 RSVCQHCYGWSLAHAKMVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTGEVAQ-QVR 355 Query: 952 VKNKGSIKLSNVKSV-------------VNSSGKLVITSRNTELKLIDEFGRTKESYKVP 998 K G+IKL V S+G +++ R K E +E + V Sbjct: 356 SKMDGTIKLPRKLRTRTHRTRHGEDALFVESNGIMILEPR----KEGSETPAPQEIH-VT 410 Query: 999 YGAVLAKGDGEQVAGGETVA-----------NWDPHTMPVITEVSGFVRFTDMIDGQTIT 1047 G+ + DG+QV G+ +A N + V ++++G V+F +++ Q Sbjct: 411 QGSTIYIVDGQQVKKGQLLAEVALGGRTTRTNTEKAVKDVASDLAGEVKFAEVVPEQKTD 470 Query: 1048 RQTDELT 1054 RQ + T Sbjct: 471 RQGNTTT 477 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 134/285 (47%), Positives = 172/285 (60%), Gaps = 22/285 (7%) Query: 1102 PGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISG 1161 PG A++Q+EDG + GD L + E T DI GLPR+ +L EAR+PKE ILA+ G Sbjct: 981 PG-AVLQIEDGDLVQRGDNLVLLVFERAKTGDIIQGLPRIEELLEARKPKEACILAKRGG 1039 Query: 1162 IVS--FGKETKGKRRLVITPVDGSDPYEEM-IPKWRQLNVFEGERVERGDVISDGPEAPH 1218 V +G G + I ++ + + + + L + +G V G +SDGP PH Sbjct: 1040 EVKVVYGD---GDEAIAIKVIESNGVVTDYPLGPGQNLAMPDGSVVPAGQPLSDGPSNPH 1096 Query: 1219 DILRL-------RGVHA--------VTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRK 1263 +IL + GV+A V ++VNEVQ VY+ QG+ I DKHIEVIVRQM K Sbjct: 1097 EILEVFFSLGSEDGVYACASHALQKVQTFLVNEVQMVYQSQGIDIADKHIEVIVRQMTNK 1156 Query: 1264 ATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAA 1323 I + G + L GE VE +V+ N + G A Y+ LLGITKASL T+SFISAA Sbjct: 1157 VRIDDGGDTTMLPGELVELRQVEQVNEAMAITGGARAQYTPVLLGITKASLNTDSFISAA 1216 Query: 1324 SFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD 1368 SFQETTRVLTEAA+ GK D LRGLKENVI+GRLIPAGTGY + + Sbjct: 1217 SFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLIPAGTGYNTYDE 1261 >UniRef50_A6YGE1 DNA-directed RNA polymerase n=1 Tax=Leptosira terrestris RepID=A6YGE1_LEPTE Length = 2003 Score = 335 bits (859), Expect = 8e-90, Method: Compositional matrix adjust. Identities = 160/279 (57%), Positives = 215/279 (77%), Gaps = 7/279 (2%) Query: 237 MILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEK 296 MIL+++PVLPP LRP+V + G+ A S++N+LY++VI RN R ++ + D + + Sbjct: 1562 MILSLIPVLPPTLRPIVSI-SGQIAVSEVNNLYQKVIFRNQRFQK----TSMDQAIYGQ- 1615 Query: 297 RMLQEAVDALLDNGRRGRAITGS-NKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVI 355 R+LQEAVD+L++NG+ G + S N R KSL+D++KGK+GRFRQNLLGKRVDYSGRSVI Sbjct: 1616 RLLQEAVDSLIENGKGGTEPSCSPNGRAWKSLSDVLKGKRGRFRQNLLGKRVDYSGRSVI 1675 Query: 356 TVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEV 415 VGP+L++HQCGLP +MA+ LF+PF+ +L + I AK+++E + VVW L + Sbjct: 1676 VVGPHLKVHQCGLPVEMAIHLFQPFLVSELMKQDPTLNIIGAKRLIETQSPVVWRCLQII 1735 Query: 416 IREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLE 475 + +HPVLLNRAPTLHRLGIQAF+P LI G+AI LHP+VC A+NADFDGDQMAVHVPL+ E Sbjct: 1736 MNDHPVLLNRAPTLHRLGIQAFQPKLIAGRAILLHPMVCTAFNADFDGDQMAVHVPLSKE 1795 Query: 476 AQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT 514 A E+ AL+ S N I+SPA G+P++VPSQD+VLG YY+T Sbjct: 1796 ACAESWALLWSRNQIMSPATGQPLMVPSQDMVLGCYYLT 1834 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 43/55 (78%) Query: 20 IKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74 I++ LASP+ I+ W+ GEV KP+T++Y T KP RDGLFC RIFGPV DY C CGK Sbjct: 18 IRMFLASPNDIQMWAGGEVTKPDTVHYTTLKPIRDGLFCERIFGPVTDYVCACGK 72 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 42/70 (60%) Query: 71 LCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDM 130 L G + K++ IC +C VE T +KVRR RMG+I+L S H+W++K + I LL + Sbjct: 342 LKGHHLSEKNKTDICPECEVEYTTSKVRRYRMGYIKLNSEVTHVWYIKGKVNYISNLLGL 401 Query: 131 PLRDIERVLY 140 +E ++Y Sbjct: 402 RKVLVELLIY 411 >UniRef50_B2X257 DNA-directed RNA polymerase n=1 Tax=Floydiella terrestris RepID=B2X257_9CHLO Length = 1521 Score = 334 bits (857), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 167/343 (48%), Positives = 235/343 (68%), Gaps = 12/343 (3%) Query: 235 EWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPD--IIV 292 E ++ LPVLPP LRP++ +D + ++DLN LY++V+ +N R+ + + +A + + Sbjct: 1127 ESFFISYLPVLPPGLRPILQIDD-QIISTDLNRLYQKVVYQNERVLKFMQNSALNNPFSL 1185 Query: 293 RNEKRMLQEAVDALLDNGRRGRAITGSNK-RPLKSLADMIKGKQGRFRQNLLGKRVDYSG 351 +++LQEAVD LL+NG+ G N+ RPLKSL+D++KGKQGRFRQNLLGKRVDYSG Sbjct: 1186 SLAQKLLQEAVDNLLENGKGGTKPETDNRGRPLKSLSDLLKGKQGRFRQNLLGKRVDYSG 1245 Query: 352 RSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDI 411 RSVI VGP L+LHQCGLPK+MALELF PF+ +L G A T AKK++ ++ + + Sbjct: 1246 RSVIVVGPKLKLHQCGLPKEMALELFMPFLIKELLASGRARTFLGAKKIIRTDDVLTFHH 1305 Query: 412 LDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVP 471 L +V+ H +LLNRAPTLH++G QAF P+L++G+AI +HPLVC +NADFDGDQMAVHVP Sbjct: 1306 LKKVVNNHVILLNRAPTLHKVGFQAFRPILVDGRAILIHPLVCPGFNADFDGDQMAVHVP 1365 Query: 472 LTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNA-----KGEGMV 526 +T +A+ EA M+S NN+LS A GEP ++PSQD+VLG+YY+T + K + Sbjct: 1366 ITPQARAEAFKFMLSQNNLLSTATGEPALLPSQDMVLGIYYLTTSVAKSIPEQKKKTKLF 1425 Query: 527 LTGPKEAERLYRSGLASLHARVKVR---ITEYEKDANGELVAK 566 + E + Y L S+H + VR + + + ANG+ AK Sbjct: 1426 FSSFDEVLKAYDRNLVSIHTNIWVRFDGLIQTDPSANGKKEAK 1468 Score = 112 bits (281), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 58/161 (36%), Positives = 85/161 (52%), Gaps = 27/161 (16%) Query: 15 EEFDAIKIALASPDMIRSWS---------FGEVKKPETINYRTFKPERDGLFCARIFGPV 65 EE + I++ASP++IR W+ FG+V T++Y T KP + GLFC RIFGP+ Sbjct: 539 EEKRLVTISMASPELIRQWAEKTLPNGKVFGQVLNANTLHYSTLKPIKGGLFCERIFGPI 598 Query: 66 KDYECLCG------------------KYKRLKHRGVICEKCGVEVTQTKVRRERMGHIEL 107 D+EC CG + K+ C +C VE T + RR ++G+I+L Sbjct: 599 NDFECACGIKIEKPIRSFSTSLEIEKEEKKSLKEREFCPECDVEYTWSDKRRHQLGYIQL 658 Query: 108 ASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIE 148 A P HIW+LK PS I +LL ++IE + Y E ++ Sbjct: 659 AIPVTHIWYLKFRPSTISILLGSKKQEIESIAYCEKSFTLD 699 >UniRef50_Q8HUH0 DNA-directed RNA polymerase subunit beta' C-terminal section n=1 Tax=Chlamydomonas reinhardtii RepID=RPC2B_CHLRE Length = 489 Score = 332 bits (850), Expect = 9e-89, Method: Compositional matrix adjust. Identities = 169/313 (53%), Positives = 216/313 (69%), Gaps = 8/313 (2%) Query: 257 GGRFATSDLNDLYRRVINRNNRLKRLLDLAA--PDIIVRNEKRMLQEAVDALLDNGRRGR 314 G+F SDLN LY+R+I RN RLK+ L A ++ +R+LQEAVD L+ NG+ G Sbjct: 2 SGQFTISDLNRLYQRIIYRNERLKKFLKDPALSSSFEMKYAQRLLQEAVDNLIQNGKSGV 61 Query: 315 AITGSNK-RPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMA 373 + R LKSL+D++KGKQGRFRQ LLGKRVDYSGRSVI VGP LRLH+CG+PK+MA Sbjct: 62 VPEKDARGRLLKSLSDILKGKQGRFRQYLLGKRVDYSGRSVIVVGPRLRLHECGIPKEMA 121 Query: 374 LELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLG 433 L L+ PF+ ++ LA T +AKK++ +V +L E+++ PVLLNRAPTLHRLG Sbjct: 122 LVLYSPFLIKRILNEKLADTYLSAKKLIRTNPLLVSQLLREIMKSCPVLLNRAPTLHRLG 181 Query: 434 IQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSP 493 QAF+P L++GKAI LHPLVC A+NADFDGDQMAVHVP+T EA+ EA LM++ NN+LSP Sbjct: 182 FQAFQPKLVDGKAILLHPLVCPAFNADFDGDQMAVHVPITFEARAEAWKLMLARNNLLSP 241 Query: 494 ANGEPIIVPSQDVVLGLYYMTRDCVN-----AKGEGMVLTGPKEAERLYRSGLASLHARV 548 A GEP+I+PSQD+VLG YY+T +C KG GM E + Y L LHA + Sbjct: 242 ATGEPLILPSQDMVLGCYYLTTNCAEKWSKLKKGSGMYFHNIHEVLKAYNQHLIHLHAVI 301 Query: 549 KVRITEYEKDANG 561 V I + + AN Sbjct: 302 WVNIQGHLETANN 314 >UniRef50_P56300 DNA-directed RNA polymerase subunit beta' n=1 Tax=Chlorella vulgaris RepID=RPOC1_CHLVU Length = 836 Score = 331 bits (849), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 164/290 (56%), Positives = 209/290 (72%), Gaps = 14/290 (4%) Query: 232 NKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDII 291 +P WMIL LPVLPP LRP+ + GG SD+N YR++I RN R+ +L D Sbjct: 395 TQPAWMILNNLPVLPPGLRPITSI-GGLVVASDINSFYRKIIIRNKRMSPRNNLGIFDTT 453 Query: 292 VRNEK-------RMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLG 344 + R +QEAVD LL R G G RPLKSL D +KGK+GRFRQ+LLG Sbjct: 454 LGGSWLSWCYNLRQVQEAVDELL---RTGSVDAG---RPLKSLLDGLKGKKGRFRQHLLG 507 Query: 345 KRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVERE 404 KRVDYSGRSVI VGP L+LHQCGLPK+MA+ELF+PFI +L L+G+ T+ AAK ++ Sbjct: 508 KRVDYSGRSVIVVGPKLKLHQCGLPKEMAVELFQPFIIQQLRLQGIVFTVTAAKVLIADR 567 Query: 405 EAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGD 464 + +VW +L E+++ HPVLLNRAPTLHRLGIQAF P L+EGKAI LHPLVC A+NADFDGD Sbjct: 568 KPIVWSVLGEILKRHPVLLNRAPTLHRLGIQAFLPRLVEGKAILLHPLVCPAFNADFDGD 627 Query: 465 QMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT 514 QMAVHVPL+ + + EA +L+ S N +L+P++G+P +P+QD+VLG YY+T Sbjct: 628 QMAVHVPLSAKTRAEALSLLWSRNQLLAPSSGQPQHLPTQDMVLGFYYLT 677 Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 60/141 (42%), Positives = 77/141 (54%), Gaps = 15/141 (10%) Query: 13 KTEEFDAIKIALASPDMIRSWS---------FGEVKKPETINYRTFKPERDGLFCARIFG 63 K+ F +I+LASP I W+ EV ET+NY+T KPE GLFC IFG Sbjct: 5 KSPFFKKAEISLASPKAIEIWTERYFPNGQPINEVTSSETVNYKTLKPEPHGLFCQTIFG 64 Query: 64 PVKDYECLCGK-----YKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLK 118 PV D+ C CGK K K RG C KCGVE T ++VRR R+G I+L P AH ++ Sbjct: 65 PVVDFTCACGKKATKLVKNKKFRGY-CPKCGVERTSSRVRRYRLGLIKLKQPVAHSLYVS 123 Query: 119 SLPSRIGLLLDMPLRDIERVL 139 PS + L L + ++ VL Sbjct: 124 HRPSPLRLCLGWSTKRLQAVL 144 >UniRef50_Q06J18 DNA-directed RNA polymerase subunit beta' n=1 Tax=Bigelowiella natans RepID=RPOC1_BIGNA Length = 760 Score = 330 bits (845), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 167/355 (47%), Positives = 233/355 (65%), Gaps = 25/355 (7%) Query: 219 KRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNR 278 +R+KL+ F Q+ +P+WMIL+ LPVLPPDLRP+V L + A SDLN Y+ +I RN R Sbjct: 354 RRLKLIMYFRQAKLQPKWMILSSLPVLPPDLRPIVELGSNKIAVSDLNKSYQTIILRNLR 413 Query: 279 LKRLLDLAAPDII---VRNEKRMLQEAVDALL--DNGRRGRAITGSNKRPLKSLADMIKG 333 LK+ + +A + +R KR+LQE+VD L+ D ++ I+ KSL+D++KG Sbjct: 414 LKKFYNNSAFNEFTEEIRYTKRLLQESVDELIQQDKSKKNNNISS------KSLSDILKG 467 Query: 334 KQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATT 393 K+GRFRQNLLGKRVDYSGRSVI V P L+LH+CG+P KMA+ELF PFI L L T Sbjct: 468 KRGRFRQNLLGKRVDYSGRSVIIVDPELKLHECGIPLKMAIELFYPFIIQYLISFNLTKT 527 Query: 394 IKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLV 453 I AK ++ + + + +I+ V+ + VLLNRAPTLH+LGIQAF+P L+ GKAI+LHPLV Sbjct: 528 IPGAKHIIHTKASFLNEIIHFVLNNYLVLLNRAPTLHKLGIQAFKPKLVTGKAIKLHPLV 587 Query: 454 CAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYM 513 C A+NADFDGDQM +H+PL+ E++ E+ L+ S NN+L + G PI+ P QDVVLG YY+ Sbjct: 588 CPAFNADFDGDQMGMHIPLSFESRAESWKLLWSRNNLLLSSMGSPILTPGQDVVLGCYYL 647 Query: 514 TRD-----------C-VNAKGEG--MVLTGPKEAERLYRSGLASLHARVKVRITE 554 T + C +N KGE + + + Y ++H + ++ +E Sbjct: 648 TSNLLDKVKTYIKPCHLNKKGENWSIYFNNLNDVLKAYNQNKVNIHTEIWIKWSE 702 Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 56/130 (43%), Positives = 83/130 (63%), Gaps = 5/130 (3%) Query: 36 GEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQT 95 GE+K +T+NY+T KPE GLFC + FGP+KD+EC CGK + G C CG+E + Sbjct: 42 GEIKTAQTMNYKTLKPENSGLFCEQTFGPIKDFECACGKKYENEFIG-FCAICGIEYASS 100 Query: 96 KVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLE 155 +VRR R+G+I+L SP HIW+LK I +LLD+PL+ IE ++Y ++ + + Sbjct: 101 QVRRNRLGYIKLVSPVVHIWYLK----YISILLDIPLKSIESIVYSTDGIIFKNFFQKPK 156 Query: 156 RQQILTEEQY 165 + QIL +E + Sbjct: 157 KNQILKKETF 166 >UniRef50_C7BEV4 DNA-directed RNA polymerase n=1 Tax=Parachlorella kessleri RepID=C7BEV4_CHLKE Length = 882 Score = 324 bits (830), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 176/387 (45%), Positives = 249/387 (64%), Gaps = 26/387 (6%) Query: 142 ESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDL-----EQ 196 + Y + GG+ Q+I + + L L+EF +F + I L + + Sbjct: 364 QFYPIQTGGLV---FQKIFSYFELLPILQEF--KFHHHLVKTYIIYLQDKLKWYPSGPDS 418 Query: 197 ECEQLREELNETNSETKR--KKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVP 254 E + RE++ + + K+ KK KR++ F + P WMIL+ LPVLPP LRP++ Sbjct: 419 EFLEEREKILKKITRLKQYEKKSFKRLQYFRDFYYTNMNPAWMILSYLPVLPPGLRPIMS 478 Query: 255 LDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEK-------RMLQEAVDALL 307 + G SD+N LYR+V+ RN R+ + D + R +QEAVD+L Sbjct: 479 IQG-ELIVSDINSLYRKVLTRNKRVNSITQFKIFDTALSGSWASWCYNLRQVQEAVDSLF 537 Query: 308 DNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCG 367 G + + + KSL D +KGK+GRFRQ+LLGKRVDYSGRSVI VGP L++++CG Sbjct: 538 KTG------SVESGKTTKSLLDSLKGKKGRFRQHLLGKRVDYSGRSVIVVGPNLKIYECG 591 Query: 368 LPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAP 427 LPK+MA+ELF+PF+ KL + LA T AAK ++ +++ ++W +L E+++ HPVLLNRAP Sbjct: 592 LPKQMAIELFQPFLIQKLRNKRLALTTTAAKTIITQKKPIIWSLLTELMKNHPVLLNRAP 651 Query: 428 TLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMST 487 TLHRLGIQAF P L+EGKAI LHPLVC A+NADFDGDQMAVH+PL ++ EA LM S Sbjct: 652 TLHRLGIQAFLPRLVEGKAILLHPLVCPAFNADFDGDQMAVHIPLGAASRSEAFHLMWSR 711 Query: 488 NNILSPANGEPIIVPSQDVVLGLYYMT 514 N+IL+PA+G+P+++P+QD+VLG YY+T Sbjct: 712 NHILAPASGQPLLLPTQDMVLGCYYLT 738 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 58/149 (38%), Positives = 81/149 (54%), Gaps = 12/149 (8%) Query: 15 EEFDAIKIALASPDMIRSWS---------FGEVKKPETINYRTFKPERDGLFCARIFGPV 65 ++F ++I LASP IR W+ GEV ET+NY+T KPE +GLFC RIFGPV Sbjct: 3 KKFQQVEIGLASPRQIRKWAERELPNGEIVGEVTSWETVNYKTLKPEPNGLFCQRIFGPV 62 Query: 66 KDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIG 125 DY C K K + G C KCGVE T ++VRR R+G+++ P H + PS + Sbjct: 63 IDYSCAFAKPKF--YMG-FCPKCGVEKTTSRVRRYRLGYVKFKQPIVHTLYASHKPSPLS 119 Query: 126 LLLDMPLRDIERVLYFESYVVIEGGMTNL 154 L L + I+ ++Y + + TN Sbjct: 120 LCLGWSNKRIQAIMYGTEFCKLSPYFTNF 148 >UniRef50_Q2WGI4 DNA-directed RNA polymerase (Fragment) n=2 Tax=Selaginella RepID=Q2WGI4_SELUN Length = 697 Score = 323 bits (827), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 206/547 (37%), Positives = 297/547 (54%), Gaps = 47/547 (8%) Query: 12 TKTEEFDAIKIALASPDMIRSWS---------FGEVKKPETINYRTFKPERDGLFCARIF 62 T ++ +I L SP+ IR+W+ G V +P T + + +PERDG RI Sbjct: 3 THQDKHQYPRIGLVSPEQIRAWADKALPTGEVVGRVTQPSTFHRGSDEPERDGTSRERIS 62 Query: 63 GPVKDYECLCGKYKRLKHRG---VICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKS 119 GP++ CGKY++ G + ++CG E +++VRR RMGHIE A H + K+ Sbjct: 63 GPIRSGVRACGKYQQGFGGGGDSIFRKECGAEYIESRVRRYRMGHIESACAVTHARYSKN 122 Query: 120 LPSRIGLLLDMPLRDIERVLY---FESYVVIEGGMTNLERQQILTEEQY---LDALEEFG 173 LPS I + PL++ E Y + V E ++ L ++Y + + F Sbjct: 123 LPSHIANIPSKPLQESESPAYRDPLSARPVTEKPTPPGFKRGFLKYDEYGTRNETIPRFS 182 Query: 174 DEFD--------AKMGAEAIQALLKSMDLEQECEQLREELNETNSE-----------TKR 214 D A G +AI+ S D + ++ E S+ T+R Sbjct: 183 HRSDSDESAEREAATGGDAIREPPASPDPKVLSDRAYAEWGSWVSDGPTGDELEDRTTRR 242 Query: 215 KK--LTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRV 272 K + I L++ +++G PEWM+ + PV PP+ RP+V L GR + D+N+ +RR+ Sbjct: 243 GKDLPVRHIGLMKNLIRTGTNPEWMVPLLSPVPPPEPRPMVQLGEGRVVSPDINEPHRRI 302 Query: 273 INRNNRL-----KRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSL 327 I RNN L +R+L AP+ + +K+ LQ AVDA + NG G +T +++RP K Sbjct: 303 ILRNNPLGDPSVRRIL---APEGAIVRQKKPLQGAVDAPIGNGIGGEPVTDTDERPSKPS 359 Query: 328 ADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLEL 387 +DM++GK+GR R+NL GKRVD+ GR I GPY HQC P+ +A+E +PFI Sbjct: 360 SDMVRGKEGRSRENLPGKRVDHPGRPAIVAGPYPSSHQCESPRGIAMEPPQPFIIRSSIG 419 Query: 388 RGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAI 447 R +A + AAK + +E V ++L EV+R HPVL NRAPTLHR GIQAFEPV +G A Sbjct: 420 RHVAPSTGAAKPPIRKEMPFVREMLREVVRGHPVLSNRAPTLHRPGIQAFEPVSADGCAT 479 Query: 448 QLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVV 507 + HP V A +NAD DGDQMAVHVP AQ EAR +S N SPA G+P+ P+QD+ Sbjct: 480 RSHPSVRAGFNADPDGDQMAVHVPPPSGAQAEARPSALSHANPPSPATGDPVSAPNQDMP 539 Query: 508 LGLYYMT 514 G + T Sbjct: 540 PGPHVPT 546 >UniRef50_Q9MTD4 DNA-directed RNA polymerase n=3 Tax=Sarcocystidae RepID=Q9MTD4_TOXGO Length = 565 Score = 321 bits (822), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 207/580 (35%), Positives = 320/580 (55%), Gaps = 55/580 (9%) Query: 20 IKIALASPDMIRSWSF---------GEVKKPETINYRTFKPERDGLFCARIFGPVKDYEC 70 +++LASP++I WS GEV +P TIN++T PE +GLFC RIFGP+ ++C Sbjct: 13 FRLSLASPNLIIKWSLKYIKNFFILGEVIEPFTINFKTGYPEPNGLFCERIFGPLLSWKC 72 Query: 71 LCG-KYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLD 129 CG + + C CGVE+ + RR RMG I LA+P AH W++K + + LLL Sbjct: 73 RCGINFINYTNINTFCNFCGVEININQSRRWRMGFINLATPIAHKWYVKDI---LSLLLH 129 Query: 130 MPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMG-AEAIQAL 188 +P+ +++ +LY++ + + + ++ Q +QY F F + +E + + Sbjct: 130 IPINELKILLYYKIF-----SLFSYKKNQ----KQY-----NFNWIFSKLLFISEWFKQI 175 Query: 189 LKSMDLEQE---CEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVL 245 LK +L E C+++ EL +N+ K+K L K L F+ + PEW+ LTVLPV+ Sbjct: 176 LKEYNLLNELVFCKEMYYELYFSNNNIKKKLLKKLSIL-HLFLLNNINPEWLFLTVLPVI 234 Query: 246 PPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKR--LLDLAAPDIIVRNEKRMLQEAV 303 P LRPLV + F +S +N+LY+ +I RNNRLKR +L + P +K++LQ ++ Sbjct: 235 PAGLRPLVKIKQKLFVSSLINNLYKIIILRNNRLKRWKILRHSIPFFFELIDKQLLQCSI 294 Query: 304 DALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRL 363 D LL+ +P S ++GK+G+FRQ +LGKR+D+SGRSVI G L Sbjct: 295 DDLLN----------IKTKPSSSNCFTLQGKKGKFRQYILGKRIDFSGRSVILPGSDLIY 344 Query: 364 HQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLL 423 GLP ++L+LFKP + L+ T+ A + + ++ IL +I + VLL Sbjct: 345 KNIGLPLNLSLDLFKPMLLNFLKKDLSIITLLRASYITQYNPILLKRILKFLITKEIVLL 404 Query: 424 NRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARAL 483 NRAPTLHR+ IQAF+P LIE + I+L+P+ C+++NADFDGDQM + + L+ A+ EA+ L Sbjct: 405 NRAPTLHRMNIQAFKPYLIEFEGIKLYPVGCSSFNADFDGDQMGLFLILSKIAKQEAKKL 464 Query: 484 MMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLAS 543 M NI SP + SQ ++LG+ +N GMVL LY + Sbjct: 465 MAFDKNIFSPTYLRNMFKLSQSIILGI----STLLNL--NGMVLYNNTIFANLYDVISSF 518 Query: 544 LHARVK----VRITEYEKDANGELVAKTSLKDTTVGRAIL 579 +K + I EK+ N ++ K + +T+GR +L Sbjct: 519 FFNLIKLDSPIWIRCLEKNYNINIIFKKYIL-STLGRILL 557 >UniRef50_Q6B8R6 DNA-directed RNA polymerase subunit beta'' n=3 Tax=Rhodophyta RepID=RPOC2_GRATL Length = 1228 Score = 320 bits (821), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 177/455 (38%), Positives = 269/455 (59%), Gaps = 21/455 (4%) Query: 581 MIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVG 640 M K + +N+ + K + +++ +R G+ AD + GF YA ++G S+ Sbjct: 1 MTQDKSIEPFFLNKVVDKSQLRQLIIWAFRNYGIARASNMADTLKDLGFLYATKAGISLS 60 Query: 641 IDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDN 700 ++D+ IP K+ ++ + + +++ G +TA ER+ KVID W +A+D + K ++ Sbjct: 61 LEDLRIPPAKNNLLKTTIDLINDTDTKYRKGEITAVERFQKVIDTWNSASDTLKKQVIKY 120 Query: 701 LQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIT 760 EK NSIYMMA SGAR + +Q+RQL GMRGLMA P G II+ PI+ Sbjct: 121 F-----------TEKD-PLNSIYMMAFSGARANISQVRQLVGMRGLMADPQGQIIDLPIS 168 Query: 761 ANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGI 820 +NFREGL + YFIS++GARKGL DTAL+TA+SGYLTRRLVDVAQD+++ E DC T +GI Sbjct: 169 SNFREGLTITDYFISSYGARKGLVDTALRTADSGYLTRRLVDVAQDVIIREADCNTSKGI 228 Query: 821 MMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAV 880 ++ +I+ L ++GRV AED+ P + ++ NT + + + + +V Sbjct: 229 VLESMIDNRKTLVSLHQALIGRVLAEDLFNPAGSKLVAKLNTEISPDLANEIISLGISSV 288 Query: 881 KVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGA 940 VRS ++C++ VC CYG +LA G I++ GEA+G+IAAQSIGEPGTQLTMRTFH GG Sbjct: 289 LVRSPITCESIKSVCQSCYGWNLAHGRIVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGV 348 Query: 941 -----ASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESY 995 A + S QV+ +I LS+ ++ LV ++ +LKL+D F + + S Sbjct: 349 FTGELAQTVISSSDCQVEYPSNIILSDTRTRHGDHAFLV--EKDIKLKLLD-FNKKQTSL 405 Query: 996 KVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITE 1030 + G++L E + G+ +A + P + +ITE Sbjct: 406 SLVKGSLLFVKHLEYITSGQVIAEY-PISNRLITE 439 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 105/275 (38%), Positives = 146/275 (53%), Gaps = 53/275 (19%) Query: 1099 YFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAE 1158 Y + + + + + I G+ +A + E T DI GLPR+ ++ EAR+ + Sbjct: 955 YLISEGSFLHVNNQALIQRGENIATLIFERVKTGDIVQGLPRIEEILEARKKSDSFF--- 1011 Query: 1159 ISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQ-----LNVFEGERVERGDVISDG 1213 +P+ + K+RQ LN+++ R+ Sbjct: 1012 -------------------------NPHVVLDSKFRQYVNQGLNLYDATRLSL------- 1039 Query: 1214 PEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD 1273 + Y+V E+Q VY+ QGV+I DKHIEVIVRQM K I N G +D Sbjct: 1040 -------------LILQLYLVKELQLVYQSQGVEIADKHIEVIVRQMTSKVKIENGGDTD 1086 Query: 1274 FLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLT 1333 L GE +E ++++ N+ L K A Y LLGITKASL TESFISAASFQETT+VLT Sbjct: 1087 HLPGEIIELQKIEMLNKALRLASKEEALYYPILLGITKASLNTESFISAASFQETTKVLT 1146 Query: 1334 EAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD 1368 +AA++ K D LRGLKENVI+GRLIPAGTG+ + + Sbjct: 1147 DAAISCKLDWLRGLKENVIIGRLIPAGTGFNIYNN 1181 >UniRef50_B5VU95 DNA-directed RNA polymerase n=3 Tax=Cyanobacteria RepID=B5VU95_SPIMA Length = 1361 Score = 317 bits (812), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 182/487 (37%), Positives = 272/487 (55%), Gaps = 54/487 (11%) Query: 593 NQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHE 652 N+ + K + K++ + G T AD++ GF YA R+G S+ +DD+ IP+ K + Sbjct: 10 NRVIDKGQLKKLMTWAFMNHGSAVTAQVADELKDLGFKYATRAGVSISVDDLQIPQSKKD 69 Query: 653 IISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQ 712 ++ +AE E+ + ++ G +T ER+ KVID W ++ + ++ N ++ Sbjct: 70 LLEDAEEEIRRTERRYTKGEITEVERFQKVIDTWNGTSEALKDEVVRNFRSTN------- 122 Query: 713 EEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQY 772 NS+YMMA SGARG+ +Q+RQL GMRGLMA P G II+ PI NFREGL V +Y Sbjct: 123 -----PLNSVYMMAFSGARGNISQVRQLVGMRGLMADPQGEIIDQPIKTNFREGLTVTEY 177 Query: 773 FISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVK 832 IS++GARKGL DTAL+TA+SGYLTRRLVDV+QD+++ E DCGT GI + + +G + Sbjct: 178 IISSYGARKGLVDTALRTADSGYLTRRLVDVSQDVILREIDCGTERGITLGDMTDGDRIL 237 Query: 833 EPLRDRVLGRVTAEDVLKPGTADIL------VPRNTLLHEQWCDLLEENSVDAVKVRSVV 886 PL+DR++GRV EDV P T +I+ RN ++ + + V V VRS + Sbjct: 238 IPLKDRLMGRVLGEDVKNPETGEIISFGEIRAVRNQVVCDDLASAICNAGVKKVFVRSPL 297 Query: 887 SCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAA 946 +C+ + VC HCYG LA +++ GEAIG+IAAQSIGEPGTQLTMRTFH GG + A A Sbjct: 298 TCEANRSVCRHCYGWSLAHAEMVDLGEAIGIIAAQSIGEPGTQLTMRTFHTGGVFT-AEA 356 Query: 947 ESSIQVKNKGSIKLSNV-------------KSVVNSSGKLVITSRNTELKLIDEFGRTKE 993 ++ G++K + S+G L + ++ ++ Sbjct: 357 AGFLRAPFDGTVKFPKTLRLRAFRTRHGDDSFLAESNGYLTVEGKDGNKRI--------- 407 Query: 994 SYKVPYGAVLAKGDGEQV----------AGGETV-ANWDPHTMPVITEVSGFVRFTDMID 1042 + G+ + DG+ V AGG T + T V T+++G V+F D++ Sbjct: 408 --NISQGSTVVVHDGQAVNADQVLVEIMAGGRTARKTTEKATKDVATDLAGEVKFADVVP 465 Query: 1043 GQTITRQ 1049 + + RQ Sbjct: 466 EEKLDRQ 472 Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 126/287 (43%), Positives = 164/287 (57%), Gaps = 19/287 (6%) Query: 1099 YFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAE 1158 Y + A++ L DG + GD L + E T DI GLPR+ +L EAR+PKE ILA+ Sbjct: 981 YRVSSGAVLHLSDGDLVQRGDNLVLLVFERPKTGDIIQGLPRIEELLEARKPKEACILAK 1040 Query: 1159 ISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPH 1218 G + VI G E + + + V +G+ V+ G ++DGP PH Sbjct: 1041 QPGTAQLEVFDDLVQLRVIE--SGGAATEYPLTPGQTVIVSDGQTVDVGQPLTDGPANPH 1098 Query: 1219 DILR-----------------LRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQML 1261 +IL L+ ++VNEVQ VY+ QG+ I+DKHIEVIVRQM Sbjct: 1099 EILEVFFNYYLEQDGMVYEAALKSFQKCQIFLVNEVQSVYQSQGIDISDKHIEVIVRQMT 1158 Query: 1262 RKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFIS 1321 K I + G + L GE E +V+ N + G A Y+ LLGITKASL T+SFIS Sbjct: 1159 SKVRIDDGGDTTTLPGELTELRQVEQVNEAMFITGGAPARYTPVLLGITKASLNTDSFIS 1218 Query: 1322 AASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD 1368 AASFQETTRVLTEAA+ GK D LRGLKENVI+GRLIPAG+G+ ++D Sbjct: 1219 AASFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLIPAGSGFNAYED 1265 >UniRef50_A2C6T1 DNA-directed RNA polymerase subunit beta' n=46 Tax=cellular organisms RepID=RPOC2_PROM3 Length = 1374 Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 178/467 (38%), Positives = 272/467 (58%), Gaps = 34/467 (7%) Query: 588 PYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIP 647 P N+ + KKA+ +++ Y+ G T AD + GF YA ++ S+ ++D+ +P Sbjct: 44 PPQFRNRVVDKKALKQLVAWAYKTHGTAVTASMADNLKDLGFRYATQAAVSISVEDLKVP 103 Query: 648 EKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVI 707 E K +++ +AEA++ +E ++ G +T ER+ KVID W N+R+ A+ N Sbjct: 104 EAKQDLLCQAEAQITATEECYRLGEITEVERHTKVIDTWTETNERLVDAVKKNFN----- 158 Query: 708 NRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGL 767 + NS++MMA+SGARG+ +Q+RQL GMRGLMA P G II+ PI NFREGL Sbjct: 159 -------QNDPLNSVWMMANSGARGNMSQVRQLVGMRGLMANPQGEIIDLPIRTNFREGL 211 Query: 768 NVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIE 827 V +Y IS++GARKGL DTAL+TA+SGYLTRRLVDVAQD++V EDDCGT GI++ V + Sbjct: 212 TVTEYVISSYGARKGLVDTALRTADSGYLTRRLVDVAQDVIVREDDCGTTRGIIVK-VED 270 Query: 828 GGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVS 887 GG R++GR+TA+ V+ +IL RNT + E+ ++ V VRS ++ Sbjct: 271 GG-----FGSRLVGRLTADQVVNV-DGEILAERNTEIDPPLSKRFEKAAITEVMVRSPLT 324 Query: 888 CDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAE 947 C+ + VC CYG LA + + GEA+G+IAAQSIGEPGTQLTMRTFH GG ++ A Sbjct: 325 CEANRSVCRKCYGWALAHNELADLGEAVGIIAAQSIGEPGTQLTMRTFHTGGVST--AET 382 Query: 948 SSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKL---IDEFGRTK-ESYKVPYGAVL 1003 ++ G+++ V + ++ +E+ + G+ + + + G++L Sbjct: 383 GVVRSTVAGTVEFGPKARVRGYRTPHGLEAQQSEVDFTLTVKPSGKGRAQRIDITTGSLL 442 Query: 1004 AKGDGEQVAGGETVA---------NWDPHTMPVITEVSGFVRFTDMI 1041 DG+++ TV + + T VI +++G VR+ +I Sbjct: 443 FVSDGQEIEADVTVVQIASVAVKKSVEKATKDVICDLAGQVRYEQVI 489 Score = 226 bits (577), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 135/310 (43%), Positives = 187/310 (60%), Gaps = 22/310 (7%) Query: 1099 YFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAE 1158 Y + +++ + DG + GD LA + E T DI GLPR+ +L EARRP+E A+L + Sbjct: 984 YMVSPDSVLHVRDGDLVQRGDGLALLVFERQKTGDIVQGLPRIEELLEARRPRESAVLCK 1043 Query: 1159 ISGIVSFGKETKGKRRLVITPVDGSDPYEEM-IPKWRQLNVFEGERVERGDVISDGPEAP 1217 G V K+ + + +T ++ D E I R + V G++V G++++DGP P Sbjct: 1044 KPGTVEI-KQGEDDESITVTVIEADDAIGEYPILLGRNVMVSNGQQVHAGELLTDGPINP 1102 Query: 1218 HDILR-----LRG-----------VHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQML 1261 H++L LRG + + +V EVQ+VY+ QGV I+DKHIEVIVRQM Sbjct: 1103 HELLDCFFEDLRGRKPLMDAAQEAIAKLQHRLVTEVQNVYKSQGVSIDDKHIEVIVRQMT 1162 Query: 1262 RKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFIS 1321 K I +AG + L GE +E +V+ N+ + G + ++ LLGITKASL T+SFIS Sbjct: 1163 SKVRIEDAGDTTLLPGELIELRQVEDTNQAMAITGGAPSEFTPVLLGITKASLNTDSFIS 1222 Query: 1322 AASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAA 1381 AASFQETTRVLTEAA+ GK D LRGLKENVI+GRLIPAGTG++ Q+ +R EA Sbjct: 1223 AASFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLIPAGTGFSGFQEELR----AEAGPH 1278 Query: 1382 PQVTAEDASA 1391 P + AED + Sbjct: 1279 PDILAEDPAG 1288 >UniRef50_O78483 DNA-directed RNA polymerase subunit beta'' n=2 Tax=Pyrenomonadales RepID=RPOC2_GUITH Length = 1286 Score = 312 bits (800), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 176/485 (36%), Positives = 281/485 (57%), Gaps = 34/485 (7%) Query: 580 WMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASV 639 ++ VP ++ N+ + KK + K++ + G AD+I GF YA ++G S+ Sbjct: 5 YLFVPPKPKFT--NKVIDKKELKKLMAWAFSNYGTGRASFMADKIKDLGFHYATKAGLSL 62 Query: 640 GIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMD 699 ++D+ +P K +++ +A E+ + ++ ++ G +T ER+ KVID W ++++ ++ Sbjct: 63 SVEDLRVPPIKRDLLLQANREIQQTEQLYERGEITTIERFQKVIDTWNNTSEQLKDEVIK 122 Query: 700 NLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPI 759 + + N IY+MA SGARG+ +Q+RQL GMRGLMA P G II+ PI Sbjct: 123 YFK------------QNDPLNPIYIMAFSGARGNISQVRQLVGMRGLMADPQGQIIDLPI 170 Query: 760 TANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEG 819 +NFREGL V +Y IS++GARKGL DTAL+TA+SGYLTRRLVDVAQD+++ E DCGT G Sbjct: 171 KSNFREGLTVTEYLISSYGARKGLVDTALRTADSGYLTRRLVDVAQDIIIREIDCGTQRG 230 Query: 820 IMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDA 879 I++ +++ + L++R++GRV E + P A ++ N L + + + + + Sbjct: 231 IVLRDMVDNNQILVSLKNRLIGRVLFETLYLPNDASVIGHINQDLDHDITNSIIKCGIKS 290 Query: 880 VKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGG 939 V VRS ++C+ VC CYG +LA G +++ GEA+G+IAAQSIGEPGTQLTMRTFH GG Sbjct: 291 VIVRSPLTCEAPRSVCQFCYGWNLAHGSLVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGG 350 Query: 940 AASRAAAESSIQVKNKG------SIKLSNVKSVVNSSGKLVITSRNTELKLIDEFG-RTK 992 + AE I+ G ++K+ +++ + G VI N +L ++++ G +T+ Sbjct: 351 VFTGELAE-QIRAPFNGIIRYPKNLKIRIIRTRHGNEG--VILDENYKLNILNQRGEKTR 407 Query: 993 ESYKVPYGAVLAKGDGEQVAGGETVAN--------WDPHTMPVITEVSGFVRFTDMIDGQ 1044 +K G L D E+ G+ + + T ++TE SG V +T++ Sbjct: 408 LEFK--QGTTLFISDNEEFKKGQIIGETKSRSTLVTEKATRDLVTETSGEVIYTNLNIEN 465 Query: 1045 TITRQ 1049 I RQ Sbjct: 466 KIDRQ 470 Score = 213 bits (542), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 124/300 (41%), Positives = 172/300 (57%), Gaps = 17/300 (5%) Query: 1099 YFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAE 1158 Y + AI+Q++D + DTLA + E T DI GLPR+ ++ EAR+PKEP L++ Sbjct: 944 YLVSAGAILQIKDHELVQRNDTLAILVFERSKTGDIVQGLPRIEEILEARKPKEPCKLSQ 1003 Query: 1159 ISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPH 1218 G ++ + + DG + +I ++L + GE V + ++DG PH Sbjct: 1004 KPGKINTTNSNDETEVIQLIDTDGYTT-DYIINNNQKLIISNGENVLLAEPLTDGAPNPH 1062 Query: 1219 DILRLR----------------GVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR 1262 ++L L + V Y+V+EVQ VY+ Q V I+DKHIEVIVRQM Sbjct: 1063 EMLNLYFNFYTSIITLYESAKLSLQKVQTYLVDEVQKVYQSQNVDISDKHIEVIVRQMTS 1122 Query: 1263 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISA 1322 K + + G + L GE VE +++ N + V ATY LLGITKASL T+SFISA Sbjct: 1123 KVKVEDGGDTTLLPGELVELQQIENINEAMMLTKGVPATYCPILLGITKASLNTDSFISA 1182 Query: 1323 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAP 1382 ASFQETTRVLTEAA+ GK D LRGLKENVI+GRLIPAGTG+ + ++ + + + P Sbjct: 1183 ASFQETTRVLTEAAIEGKADWLRGLKENVIIGRLIPAGTGFNAYNEQHKSSKSMKLTGIP 1242 >UniRef50_Q7PCJ6 DNA-directed RNA polymerase subunit beta'' n=10 Tax=Eukaryota RepID=RPOC2_CHLRE Length = 3120 Score = 311 bits (797), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 156/363 (42%), Positives = 226/363 (62%), Gaps = 17/363 (4%) Query: 582 IVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGI 641 +V K N K + +++ G TV +Q+ TGF YA ++G S+G+ Sbjct: 103 LVTKNATAPFFNFTFDKGRLKNLVSWTLENYGQYKTVELLEQLKKTGFEYATKAGISLGL 162 Query: 642 DDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNL 701 DD+ IP KK ++ EAE Q+Q G +TA ER+ ++ID W ++++ + +++ Sbjct: 163 DDLKIPPKKKILLLEAEQLTKLTIHQYQRGDITAVERFQRLIDTWHRTSEQLKQEVINYF 222 Query: 702 QTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITA 761 + ++N +YMMA SGARG+ +Q+RQL GMRGLM+ P G II+ PI + Sbjct: 223 EETDILN------------PVYMMAFSGARGNISQVRQLVGMRGLMSDPQGQIIDFPIQS 270 Query: 762 NFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIM 821 NFREGL + +Y IS++GARKG+ DTAL+TAN+GYLTRRLVDVAQ ++++ DCGTH+GI Sbjct: 271 NFREGLTLTEYIISSYGARKGIVDTALRTANAGYLTRRLVDVAQHVIISHYDCGTHKGIF 330 Query: 822 MTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEE--NSVDA 879 +T + EG + R++GRV A D+ KP + + RN E D+ E + Sbjct: 331 LTDMKEGNKTIVSAQSRIIGRVLARDIYKPNSTITIAKRN---QEISTDVAFEIGKVTNR 387 Query: 880 VKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGG 939 + VRS ++C+T +C CYG LA+G++++ GEA+GVIAAQSIGEPGTQLTMRTFH GG Sbjct: 388 IFVRSALTCNTTKLLCQLCYGWSLAQGNLVSVGEAVGVIAAQSIGEPGTQLTMRTFHTGG 447 Query: 940 AAS 942 S Sbjct: 448 VFS 450 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 46/86 (53%), Positives = 61/86 (70%), Gaps = 5/86 (5%) Query: 1283 SRVKIANRELEANGKVGAT-----YSRDLLGITKASLATESFISAASFQETTRVLTEAAV 1337 SR ++ L N +V Y +LGIT+ASL ESF+SAASFQ+TTRVL++AA+ Sbjct: 3029 SRETLSTDPLNPNNQVAFAIEPIKYEPIVLGITRASLEVESFLSAASFQQTTRVLSQAAL 3088 Query: 1338 AGKRDELRGLKENVIVGRLIPAGTGY 1363 K+D L+GLKEN+I+G LIPAGTG+ Sbjct: 3089 YKKKDFLKGLKENIIIGNLIPAGTGF 3114 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 34/53 (64%) Query: 1224 RGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLE 1276 + + + + IV+ + VYR QGV I DKH+E++V+QM K I+N+ +S E Sbjct: 2809 QSFYKIQQIIVDGILRVYRSQGVSIADKHVEIVVKQMTSKVRIINSNASKMSE 2861 >UniRef50_B2X1Z4 DNA-directed RNA polymerase subunit beta'' n=2 Tax=cellular organisms RepID=RPOC2_OEDCA Length = 2617 Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 150/353 (42%), Positives = 222/353 (62%), Gaps = 21/353 (5%) Query: 593 NQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHE 652 NQ K + + C + G T+ + + Y GF YA ++G S+ IDD++IP K + Sbjct: 54 NQTFDKNRLKNFIFWCLKNYGQNKTIKVLEILKYLGFKYATKAGLSLSIDDLIIPPTKSK 113 Query: 653 IISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQ 712 ++ EAE Q+++ +T ER+ ++I+ W ++++ M+ + +T + Sbjct: 114 LLIEAELTTRTAMLQYKNAQITNLERFQQIIETWHITSEKMKDDMIYHFKTTNI------ 167 Query: 713 EEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQY 772 FN +YMMA SGARG+ +Q+RQL GMRGLMA P G I++ PI +NFREGL + +Y Sbjct: 168 ------FNPLYMMAFSGARGNVSQVRQLVGMRGLMANPQGQILDFPIQSNFREGLTLTEY 221 Query: 773 FISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVK 832 IS +GARKG+ DTAL+TAN+GYLTRRLVDVAQ ++++ DCGTH GI+++ + +G + Sbjct: 222 VISCYGARKGVVDTALRTANAGYLTRRLVDVAQHVIISNFDCGTHRGIIISEMKQGNKLL 281 Query: 833 EPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEE---NSVDAVKVRSVVSCD 889 LR R+LGRV A+DV + D+L+ + +++ D L E + V V +RS ++C Sbjct: 282 FSLRQRLLGRVLAKDV---KSGDLLIAKK---NQEISDHLSEIIASIVKTVIIRSPLTCK 335 Query: 890 TDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAAS 942 T +C CYG LA G ++ GE +G+IAAQSIGEPGTQLTMRTFH GG + Sbjct: 336 TTQFICQLCYGWSLAEGRLVGVGETVGIIAAQSIGEPGTQLTMRTFHTGGVFA 388 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 90/205 (43%), Positives = 121/205 (59%), Gaps = 25/205 (12%) Query: 1183 SDPYEEM--------IPKWRQLNVFEGERVERGDVISDGPEAPHDI----------LRL- 1223 S PY+++ IPK QL FE G + D +I L+L Sbjct: 2409 SLPYQQLKTGDIVQGIPKIEQL--FEARLTFAGKLEYDNLTNILEIIFQTYKNKLTLKLA 2466 Query: 1224 --RGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVE 1281 R + V IVN +Q +YR QGV I+DKH+EVIV+QM +K I+++G S FL GE + Sbjct: 2467 VRRSIELVQMIIVNSIQRIYRSQGVNISDKHLEVIVKQMTKKVEIIDSGQSGFLIGEHFD 2526 Query: 1282 YSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKR 1341 V++ N +L V Y +LGI+KASL T+SF+SAASFQ TTR+L+++A KR Sbjct: 2527 LDVVELWNSKLSKIKHVK--YKPLILGISKASLQTDSFLSAASFQYTTRILSQSAFFKKR 2584 Query: 1342 DELRGLKENVIVGRLIPAGTGYAYH 1366 D L+GLKEN+IVG +IPAGTGY H Sbjct: 2585 DFLKGLKENIIVGNIIPAGTGYLGH 2609 >UniRef50_D0VMX6 DNA-directed RNA polymerase n=1 Tax=Volvox carteri f. nagariensis RepID=D0VMX6_VOLCA Length = 3368 Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 153/332 (46%), Positives = 217/332 (65%), Gaps = 17/332 (5%) Query: 613 GLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGL 672 G TV +Q+ TGF YA ++G S+GIDD+ IP KK+ ++ EAE Q+Q Sbjct: 120 GQYKTVELLEQLKKTGFEYATKAGISLGIDDLKIPPKKNTLLLEAEQLTKLTVHQYQRAD 179 Query: 673 VTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARG 732 +TA ER+ ++ID W ++++ + +++ + ++N +YMMA SGARG Sbjct: 180 ITAVERFQRLIDTWHRTSEQLKQEVINYFEETDILN------------PVYMMAFSGARG 227 Query: 733 SAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTAN 792 + +Q+RQL GMRGLM+ P G II+ PI +NFREGL + +Y IS++GARKG+ DTAL+TAN Sbjct: 228 NISQVRQLVGMRGLMSDPQGQIIDFPIRSNFREGLTLTEYIISSYGARKGIVDTALRTAN 287 Query: 793 SGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPG 852 +GYLTRRLVDVAQ ++++ DCGT +GI +T + EG ++R++GRV A D+ KP Sbjct: 288 AGYLTRRLVDVAQHVIISHYDCGTQKGIFLTDMKEGNKTIVSAQNRIIGRVLARDIYKPN 347 Query: 853 TADILVPRNTLLHEQWCDLLEENS--VDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIIN 910 T + RN E DL E + + VRS ++C+T +C CYG LA+G++++ Sbjct: 348 TNIKVASRN---QEISTDLAFEITKITNRFFVRSALTCNTTKLLCQLCYGWSLAQGNLVS 404 Query: 911 KGEAIGVIAAQSIGEPGTQLTMRTFHIGGAAS 942 GEA+GVIAAQSIGEPGTQLTMRTFH GG S Sbjct: 405 VGEAVGVIAAQSIGEPGTQLTMRTFHTGGVFS 436 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 42/62 (67%), Positives = 53/62 (85%) Query: 1302 YSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGT 1361 Y +LGIT+ASL ESF+SAASFQ+TTRVL++AA+ K+D L+GLKEN+I+G LIPAGT Sbjct: 3300 YEPIVLGITRASLEVESFLSAASFQQTTRVLSQAALYKKKDFLKGLKENIIIGNLIPAGT 3359 Query: 1362 GY 1363 GY Sbjct: 3360 GY 3361 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/180 (25%), Positives = 83/180 (46%), Gaps = 11/180 (6%) Query: 1104 KAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAE-ISGI 1162 ++I+ G I ++ + + T DI G+P+V LFEAR K + + ++ + Sbjct: 3000 RSIIHASHGDFIRYKTSVITLTYQQLKTGDIVQGIPKVEQLFEARSTKRGRLFRDNVTNL 3059 Query: 1163 VS--FGKE-TKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHD 1219 ++ F K K L +D S P+ Q ++ + ++ + + Sbjct: 3060 LTGLFLKYFVKSAYLLRKNMLDISKKTNITYPQNLQTKQTLLKQNTKPNLFVNNKQNQTI 3119 Query: 1220 ILRL-------RGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSS 1272 +L L + + + + IV+ + VYR QGV I DKH+E+IV+QM K I+N +S Sbjct: 3120 LLALALHWSVKQSFYKIQQIIVDGILRVYRSQGVSIADKHVEIIVKQMTSKVRIINPNAS 3179 >UniRef50_Q9MUS7 DNA-directed RNA polymerase subunit beta'' n=2 Tax=Eukaryota RepID=RPOC2_MESVI Length = 1223 Score = 308 bits (789), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 174/435 (40%), Positives = 257/435 (59%), Gaps = 30/435 (6%) Query: 593 NQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHE 652 N+ + K I +++ G T D++ GF +A ++G S+ IDD+ IP K Sbjct: 24 NRIMNKGEIRRIIAWFLFNHGTSRTAHMVDRLKILGFYHATKAGISLSIDDLSIPPTKKW 83 Query: 653 IISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQ 712 ++ +AE E+A+ Q+ + G +TA ER+ KVID W + +ET+ N Q Sbjct: 84 LLEDAEQEIAKTQKNYSIGKITAVERFQKVIDTWHST-------------SETLKNEVVQ 130 Query: 713 EEKQVS-FNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQ 771 +Q + N +YMMA SGARG+ +Q+ QL GMRGLM+ P G II+ PI +NFREGL V + Sbjct: 131 YFEQTNPLNPVYMMAFSGARGNLSQVSQLVGMRGLMSDPQGQIIDLPIRSNFREGLTVTE 190 Query: 772 YFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDV 831 Y IS +GARKGL DTAL+TA+SGYLTRRLVDVAQD+++ E DCGT GI++ PV + V Sbjct: 191 YVISCYGARKGLVDTALRTADSGYLTRRLVDVAQDMIIRETDCGTKSGILLGPVKDEQKV 250 Query: 832 KEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTD 891 L++R++GRV AE++ P + +N + D + E + VRS ++C + Sbjct: 251 VFSLQERLIGRVLAENIYSPKQKQYIAKKNQDISASLSDKICEIKRTNILVRSPLTCKSI 310 Query: 892 FGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQ 951 VC CYG LA G++++ GEA+G+IAAQSIGEPGTQLTMRTFH GG + A+ Sbjct: 311 RSVCQLCYGWSLAHGNLVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTGNIAK---- 366 Query: 952 VKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEF-------GRTKE-SYKVPYGAVL 1003 + + SI + S+ N+ + + +R+ E+ LI + G+ KE + +VP +L Sbjct: 367 -QIRSSIDGKIIYSLTNT---IPMRTRHGEIALITQSNINICIQGKNKEFNIEVPINTIL 422 Query: 1004 AKGDGEQVAGGETVA 1018 +G V + +A Sbjct: 423 LVNNGSMVRAKQLIA 437 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 130/309 (42%), Positives = 168/309 (54%), Gaps = 55/309 (17%) Query: 1071 GKDLRPAL------KIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARI 1124 GK++ P + +++ Q N V + + Y + +A++ ++DG + SGDTL + Sbjct: 928 GKEIVPGILAPQSGQVIQLQANRVTLR---LARPYLVSSEAVLYVDDGDFVKSGDTLVML 984 Query: 1125 PQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSD 1184 E T DI GLPR+ +L EARR TKG + L P + D Sbjct: 985 IFEQSKTGDIVQGLPRIEELLEARR-------------------TKGLKPL---PNNLHD 1022 Query: 1185 PYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQ 1244 L F E E+ I + + L+L ++VNEVQ VY+ Q Sbjct: 1023 L----------LQSFFDEATEKYG-IQKAAKKSFEKLQL--------FLVNEVQSVYKAQ 1063 Query: 1245 GVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSR 1304 GV I+DKHIEVIVRQM K I G + L GE +E R++ NR N V A Y Sbjct: 1064 GVHISDKHIEVIVRQMTSKVMIEEGGDTTLLPGELIELHRIENMNR----NVSVHAKYKP 1119 Query: 1305 DLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 +LGITKASL TESFISAASFQETTRVLT+AA+ GK D LRGLKENVI+GRLIPAGTG+ Sbjct: 1120 IVLGITKASLNTESFISAASFQETTRVLTKAAIEGKTDWLRGLKENVIIGRLIPAGTGFN 1179 Query: 1365 YHQDRMRRR 1373 H D+M R Sbjct: 1180 VH-DKMYSR 1187 >UniRef50_C0JX50 DNA-directed RNA polymerase n=1 Tax=Pyramimonas parkeae RepID=C0JX50_9CHLO Length = 1138 Score = 302 bits (774), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 162/363 (44%), Positives = 226/363 (62%), Gaps = 16/363 (4%) Query: 585 KGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDM 644 K +P+ N+ + K + + + + G T+ DQ+ GF +A ++G S+G++D+ Sbjct: 16 KEIPF-FFNREMDKGELKRFIAWHLKNRGKIKTLKMIDQLKTLGFYHATKAGLSLGLEDL 74 Query: 645 VIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTE 704 IP K +I AE E+ E E+F G VTA ER K++D+W AA++ + +++ + Sbjct: 75 KIPPAKKILIGNAEIEMKETDEKFFKGEVTAVERSQKILDVWNAASELLKDEVVEYFRQT 134 Query: 705 TVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFR 764 ++N +YMMA SGARG+ +Q+RQL GMRGLMA P G II+ PI +NFR Sbjct: 135 DLLN------------PVYMMAFSGARGNLSQVRQLVGMRGLMADPQGEIIDLPIKSNFR 182 Query: 765 EGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTP 824 EGL V +Y IS +GARKGL DTALKTANSGYLTRRLVDVAQ +++ E DC T GI ++P Sbjct: 183 EGLTVTEYIISCYGARKGLVDTALKTANSGYLTRRLVDVAQSVIIKEIDCTTRHGITISP 242 Query: 825 VIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRS 884 +++ V PL+ R++GRV A + L RN + EQ L++ V VRS Sbjct: 243 LVKERKVLLPLKRRLVGRVLANSIRTKNKWIGL--RNEDISEQLAIQLDQEK-KKVLVRS 299 Query: 885 VVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRA 944 ++C T +C CYG LA+G +++ GEAIG+IAAQSIGEPGTQLTMRTFH GG S Sbjct: 300 PLTCQTVRHICKLCYGWSLAQGSMVDLGEAIGIIAAQSIGEPGTQLTMRTFHTGGVFSTG 359 Query: 945 AAE 947 A+ Sbjct: 360 VAD 362 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 89/260 (34%), Positives = 144/260 (55%), Gaps = 41/260 (15%) Query: 1104 KAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIV 1163 K+ + + + G L + + ++DI GLP++ +LFEARR K Sbjct: 915 KSKISVSHNSLVYEGGALFNLLYKKAKSEDIVQGLPKIEELFEARRTKN----------- 963 Query: 1164 SFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRL 1223 + P+ ++ +E++ + + G + + D Sbjct: 964 -------------LRPIQ-NNSHEKLQKLFEEYKEIWGLEIASRMSLKD----------- 998 Query: 1224 RGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYS 1283 + +++V+ VQ VY+ QGV I+DKH+E+IV+QM + ++++ G + L GE VE+ Sbjct: 999 -----IQKFLVDSVQHVYQSQGVDISDKHVEIIVKQMTSRVSVIHGGQTSLLYGELVEFH 1053 Query: 1284 RVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDE 1343 ++ + N + + G+ ATY +LGITKASL T+SF+SAASFQETT+VLT+AA+ GK D Sbjct: 1054 QLHLINDHMLSLGRQKATYEPIILGITKASLTTQSFLSAASFQETTKVLTQAAIQGKIDL 1113 Query: 1344 LRGLKENVIVGRLIPAGTGY 1363 GLKENV++G+LIPAGTG+ Sbjct: 1114 FYGLKENVLIGQLIPAGTGF 1133 >UniRef50_P48120 DNA-directed RNA polymerase subunit beta'' n=1 Tax=Cyanophora paradoxa RepID=RPOC2_CYAPA Length = 1265 Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 145/355 (40%), Positives = 220/355 (61%), Gaps = 12/355 (3%) Query: 593 NQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHE 652 NQ +GKK + ++ + G T +Q+ GF YA ++G S+ ++D++IP K Sbjct: 14 NQTIGKKEVKNVIAWAFTSYGAARTAYLVEQLKDLGFHYATKAGISLSVEDLLIPPLKDS 73 Query: 653 IISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQ 712 ++ AE E+ ++ G +T ER+ KVIDIW ++ + ++D ++ Sbjct: 74 LLQTAENEIKATLNRYLLGEITEVERFQKVIDIWHRTSETLKDEVVDYFKSTD------- 126 Query: 713 EEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQY 772 NS+YMM+ SGARG+ +Q+ QL GMRGLMA P G II+ PI +NF+EGL +Y Sbjct: 127 -----PLNSLYMMSFSGARGNLSQVHQLVGMRGLMADPQGEIIDFPIRSNFKEGLTTTEY 181 Query: 773 FISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVK 832 IS++GARKG+ DTAL+TA+SGYLTRRLVD+AQ++++ E DC T G+++T + E G + Sbjct: 182 LISSYGARKGVVDTALRTADSGYLTRRLVDIAQEVIIREIDCETPRGVILTALKENGKIL 241 Query: 833 EPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDF 892 L+DR++GRV ++ P T ++ +N + D + + + V +RS ++C Sbjct: 242 ISLKDRLVGRVLLHNLYHPKTHSLIAQKNESISVLLADDIIKAGLKEVWIRSPLTCKATR 301 Query: 893 GVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAE 947 VC +CYG +LA G ++ GEA+G+IAAQSIGEPGTQLTMRTFH GG + A+ Sbjct: 302 SVCQYCYGWNLAHGRLVELGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTAEVAK 356 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 113/291 (38%), Positives = 169/291 (58%), Gaps = 25/291 (8%) Query: 1099 YFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAE 1158 Y + +AI+++ G + SG++LA + E T DI GLPR+ +L EAR+PK+ +L+ Sbjct: 940 YLISARAIIRVLTGDLVQSGESLALLVFERAKTGDIIQGLPRIEELLEARKPKDNCVLST 999 Query: 1159 ISGIVS-FGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAP 1217 G + ET L I +D + E+ P V + +E G +S+G + Sbjct: 1000 HPGFTQLYYSETI---ELKIKSLDKINTLLELQPGVFP-TVTNNQFIEAGAPLSEGDISV 1055 Query: 1218 HDILRL--------------------RGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIV 1257 H+IL + + + +++V+EVQ VY+ QG+ I+DKHIE+I+ Sbjct: 1056 HEILEIFFNLYFKNRVNCLSLADAIHLSLQKIQQFLVSEVQSVYQSQGIDISDKHIEIII 1115 Query: 1258 RQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATE 1317 +QM K I G + L E +E+ +++ N + + A+Y+ LLGITK+SL T+ Sbjct: 1116 KQMTNKVKIEEGGDTTLLPNELIEFQQIEKMNEKFSTSNGQLASYTPILLGITKSSLNTQ 1175 Query: 1318 SFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD 1368 SFISAASFQETTRVL +AAV GK D+LRGLKENVI+G LIPAGTG++ + D Sbjct: 1176 SFISAASFQETTRVLAKAAVEGKIDQLRGLKENVIIGNLIPAGTGFSAYND 1226 >UniRef50_D1J789 DNA-directed RNA polymerase n=1 Tax=Ectocarpus siliculosus RepID=D1J789_ECTSI Length = 1278 Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 150/352 (42%), Positives = 220/352 (62%), Gaps = 14/352 (3%) Query: 593 NQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHE 652 N + KK + K++ ++ G + F DQ+ GF YA +SG S+ I+D+ IP K + Sbjct: 10 NNTINKKELKKIIEWAFKNYGQRKAAYFVDQLKEMGFEYATKSGISISIEDLRIPPVKID 69 Query: 653 IISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQ 712 ++ A + + Q ++G +T ER+ ++I IW ++ + + +++ + Sbjct: 70 LMRRASFDAFLTEAQAKNGEITEVERFQRIIYIWNTTSEELKERLIEFFK---------- 119 Query: 713 EEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQY 772 K NS+Y+MA SGARG+ AQ+RQL GMRGLM+ P G II+ I ANFREGL++ Y Sbjct: 120 --KTDPLNSVYIMAFSGARGNIAQVRQLVGMRGLMSDPSGRIIDRAIGANFREGLSITDY 177 Query: 773 FISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVK 832 IS++GARKGL DTA+KTA+SGYLTRRLV+VAQ ++++E DC T GI + ++ D K Sbjct: 178 IISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIISELDCKTERGIFLQESVKDKDEK 237 Query: 833 E--PLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDT 890 PL + + GRV A + KPGT I+ RN + + L + ++ V VRS ++C+ Sbjct: 238 GFLPLTELLNGRVLASSIFKPGTKKIIAFRNQEITSSLVENLIKANITKVLVRSPLTCEC 297 Query: 891 DFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAAS 942 VC HCYG +LA G+++ GE +G+IAAQSIGEPGTQLTMRTFH GG + Sbjct: 298 RRAVCQHCYGWNLALGNLVELGETVGLIAAQSIGEPGTQLTMRTFHTGGVFT 349 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 106/305 (34%), Positives = 170/305 (55%), Gaps = 25/305 (8%) Query: 1082 DAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRV 1141 + +GN +++ + YF A+V+ G I +TL ++ E T DI GLP++ Sbjct: 939 EVKGNKLVL---HLGQSYFFSNGALVRKIPGDYIRRQETLGQLIFERLITGDIVQGLPKI 995 Query: 1142 ADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEG 1201 ++ EAR+PK ++L+ G ++ + T + P +D Y+ + ++L V + Sbjct: 996 NNILEARKPKIESLLSTRPGFINSIRYTSNFIVIGTKPSIKNDYYKA--SRSQRLVVRKY 1053 Query: 1202 ERVERGDVISDGPEAPHDILRL------------------RGVHAVTRYIVNEVQDVYRL 1243 E V G ++ G PH +L + R + + ++ VQ +Y Sbjct: 1054 ESVSVGQPLTQGSLNPHTLLHVYFRYFCSLGLLSTYESAYRSLKKLQGLLLTSVQAIYVS 1113 Query: 1244 QGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYS 1303 QGV I+ KH+E+IVR+M K + + G ++FL G+ ++ + + N ++ N ++G + Sbjct: 1114 QGVMISSKHVELIVREMTHKVYVESPGKTNFLPGDIIDLEQAQYINLCIKNNNQLG--FR 1171 Query: 1304 RDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGY 1363 LLGITK+SL T+SF++AASFQETTRVLT AA+ GK D LRGLKEN I GRLIPAGTG+ Sbjct: 1172 PILLGITKSSLKTDSFLAAASFQETTRVLTGAAIQGKTDWLRGLKENAITGRLIPAGTGF 1231 Query: 1364 AYHQD 1368 ++D Sbjct: 1232 YINKD 1236 >UniRef50_Q9TM34 DNA-directed RNA polymerase subunit beta'' n=1 Tax=Cyanidium caldarium RepID=RPOC2_CYACA Length = 1269 Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 178/487 (36%), Positives = 273/487 (56%), Gaps = 38/487 (7%) Query: 588 PYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIP 647 PY +N+ + K + +++ + G+ + AD + GF +A ++G S+ I+D+ IP Sbjct: 13 PY-FLNRIIEKSELREIIEVVFHKNGIAKASLIADNLKEIGFGFATKAGISISIEDLKIP 71 Query: 648 EKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVI 707 K I+ E+ + + F+ +T E+ K D W A S+A+ D + + Sbjct: 72 PNKSRILQITNQELRKTEISFKRAEITTIEKSQKSTDTWNNA----SEALKDEIIKYYRL 127 Query: 708 NRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGL 767 N +YMMA SGARG+ +Q++QL GMRGLMA P+G IIE PI +NFREGL Sbjct: 128 TD--------PLNPVYMMAFSGARGNLSQVKQLVGMRGLMADPNGQIIELPILSNFREGL 179 Query: 768 NVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIE 827 NV +Y IS++GARKGL DT+L+TA+SGYLTRRLVDVAQD++V E DC T+ GI + + Sbjct: 180 NVTEYLISSYGARKGLVDTSLRTADSGYLTRRLVDVAQDIIVREIDCKTNNGITFSNIQN 239 Query: 828 GGDVKEPLRDRVLGRVTAEDVLKPGTADI-LVPRNTLLHEQWCDLLEENSVDAVKVRSVV 886 + PL R++GR+ A+DV P T + + +NTL+ ++N++ +K+RS + Sbjct: 240 NEKIIIPLYKRLIGRILADDVKNPITPQVNIASKNTLITGNLIKEFKKNNIQKIKLRSPL 299 Query: 887 SCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAA 946 +C + +C CYG L+ G +++ GEAIG+IAAQSIGEPGTQLTMRTFH GG + A Sbjct: 300 TCQSYRSICQKCYGASLSDGKLVDIGEAIGIIAAQSIGEPGTQLTMRTFHTGGVFT-AEF 358 Query: 947 ESSIQVKNKGSIKL-SNVKS------------VVNSSGKLVITSRNTELKLIDEFGRT-- 991 I+ +G IK SN+K ++ S I + +E K+ E G T Sbjct: 359 SKPIKTLFEGVIKYPSNLKFHHVRTRHGDDAIIIEKSATFDIRTTQSERKITLETGTTLL 418 Query: 992 -KESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQT 1050 K++ + V+A E G + + T +I+ +G + F+D+ + + R Sbjct: 419 VKDNSFIKKNQVIA----ETSTSGRLIT--EKSTKDLISNSAGEIYFSDITIEERVDRHG 472 Query: 1051 DELTGLS 1057 + LT +S Sbjct: 473 N-LTKIS 478 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 119/308 (38%), Positives = 171/308 (55%), Gaps = 20/308 (6%) Query: 1086 NDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLF 1145 ND LI + Y + ++ + G I GD LA + + T DI GLPR+ ++ Sbjct: 940 NDKLIT-IRIAEPYLISPGTLIHVNHGELIRKGDYLALLVFDKIKTGDIIQGLPRIEEIL 998 Query: 1146 EARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVE 1205 EAR+P+E LA+ G + KG+ L+ + Y ++ +++ V G V Sbjct: 999 EARKPRETCHLAKFDGKIYVHYNDKGES-LISLESQKKEKYVYILRLNQRVLVQSGTEVT 1057 Query: 1206 RGDVISDGPEAPHDILRLRGVHAVTRY----------------IVNEVQDVYRLQGVKIN 1249 G+ I+DG PH++L + + +T+ ++ E+Q VY+ Q ++IN Sbjct: 1058 IGEPITDGLINPHEMLEIFFEYFLTQTSPIQATKASFEKIRLELLKEIQQVYQSQKIEIN 1117 Query: 1250 DKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGI 1309 DKHIEVI+RQM K I G + GE V ++++ N + A K A Y LLGI Sbjct: 1118 DKHIEVIIRQMTSKVLIQERGDTTLFPGELVTINQIEKINSAIIAVNKKEAKYKPVLLGI 1177 Query: 1310 TKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAY--HQ 1367 TKASL T+SFISAASFQETTR+LTEAA+ GK D L+GLKENVI+GRLIP GTG ++ Sbjct: 1178 TKASLNTDSFISAASFQETTRILTEAAIEGKVDWLKGLKENVIIGRLIPGGTGLISLDNK 1237 Query: 1368 DRMRRRAA 1375 D ++ R A Sbjct: 1238 DSIKMRLA 1245 >UniRef50_Q7YN58 DNA-directed RNA polymerase n=2 Tax=Eimeriorina RepID=Q7YN58_EIMTE Length = 571 Score = 295 bits (756), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 178/507 (35%), Positives = 288/507 (56%), Gaps = 42/507 (8%) Query: 20 IKIALASPDMIRSWSF---------GEVKKPETINYRTFKPERDGLFCARIFGPVKDYEC 70 KI++ASP +I W++ G++ +P TI+++T P+ +GLFC RIFGP+ ++C Sbjct: 20 FKISIASPLIIIRWAWRKINNIIITGQISEPYTIDFKTGNPKLNGLFCERIFGPLISWQC 79 Query: 71 LCGKYKRLK--HRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLL 128 CG +K + +C CG E T +VRR R+G+I L SP HIW+L L + +L Sbjct: 80 KCGLFKNIDPIKYTCLCPLCGSENTTNQVRRYRIGYIYLYSPIVHIWYLYEL---LPYIL 136 Query: 129 DMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQAL 188 ++P I +L+ Y + N+ + +T Q++ A + IQ L Sbjct: 137 NIP---INILLFLIYYKFLLENNKNINNLKKITITQFIFA-------------SNYIQYL 180 Query: 189 LKSMDLEQECEQLREELNETNSET---KRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVL 245 L+ ++ + +++ L TN+ K+K K I LL + + +P+W++L +LPVL Sbjct: 181 LQRFNILNKILKIKSLL-YTNTNINLEKKKNFLKPINLLNLCILNNIQPQWIMLDILPVL 239 Query: 246 PPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKR--LLDLAAPDIIVRNEKRMLQEAV 303 P LRPL+ L+ F +S LN+LYR +I NN+LK+ LL P KR LQ+A+ Sbjct: 240 PSGLRPLIQLNNNNFGSSSLNELYRIIIIINNKLKQWQLLRRKFPISFEITAKRNLQQAI 299 Query: 304 DALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRL 363 D L+++ + + K+ L SL+ ++GK FRQ +LGKR+D+SGRSVI GP L Sbjct: 300 DILIEDNYKNK------KKNLISLSSHLQGKFNYFRQYILGKRIDFSGRSVIVSGPALIF 353 Query: 364 HQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLL 423 ++ G+ +++ELFKP I L+ T+ A +E ++ +L + + ++ Sbjct: 354 NKIGISTNLSIELFKPIILNILKKNKYINTLLRASYFIEYSPIILKRLLKFIFNKEIIMF 413 Query: 424 NRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARAL 483 NRAPTLHR+ IQ F+P+L E + I+L PL C+ +NADFDGDQM + + L+ A+ EA+ Sbjct: 414 NRAPTLHRMNIQTFKPLLTENEIIKLFPLACSGFNADFDGDQMGIFLILSKSAKKEAKKN 473 Query: 484 MMSTNNILSPANGEPIIVPSQDVVLGL 510 ++ N+ SP++ + I SQ+++LGL Sbjct: 474 IIFDKNLFSPSSQKNIFKYSQNIILGL 500 >UniRef50_D1GJH4 DNA-directed RNA polymerase n=1 Tax=Fucus vesiculosus RepID=D1GJH4_FUCVE Length = 1283 Score = 295 bits (755), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 147/351 (41%), Positives = 218/351 (62%), Gaps = 13/351 (3%) Query: 593 NQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHE 652 N + KK + K++ + G + F DQ+ GF YA +SG S+ I+D+ IP K Sbjct: 15 NNIINKKELKKIIEWAFNNYGQRKAAYFVDQLKGLGFEYATKSGISISIEDLRIPPVKTT 74 Query: 653 IISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQ 712 ++ A +V + + +G +T ER+ K+I IW ++ + + ++D + Sbjct: 75 LMKNATRDVFITESKANNGEITEVERFQKIIYIWNNTSEELKERLIDFFK---------- 124 Query: 713 EEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQY 772 K NS+Y+MA SGARG+ +Q+RQL GMRGLM+ P+G II+ ITANFREGL++ Y Sbjct: 125 --KTDPLNSVYIMAFSGARGNISQVRQLVGMRGLMSDPNGQIIDRAITANFREGLSITDY 182 Query: 773 FISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVK 832 IS++GARKGL DTA+KTA+SGYLTRRLV+VAQ ++++E DC T GI++ IE K Sbjct: 183 IISSYGARKGLVDTAIKTADSGYLTRRLVEVAQSIIISELDCKTKRGILLQEDIESDKKK 242 Query: 833 E-PLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTD 891 +++ + GRV A + KPGT +++ RN + + + + +RS ++C+ Sbjct: 243 FLSVKELINGRVLATSICKPGTKELVAFRNQQVTSSLTKQIINLKIAKILIRSPLTCECR 302 Query: 892 FGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAAS 942 VC HCYG +LA G+++ GE +G+IAAQSIGEPGTQLTMRTFH GG + Sbjct: 303 RAVCQHCYGWNLASGNLVELGETVGLIAAQSIGEPGTQLTMRTFHTGGVFT 353 Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 113/303 (37%), Positives = 166/303 (54%), Gaps = 25/303 (8%) Query: 1084 QGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVAD 1143 +GN +L+ D YF A+++ G I + ++ + T DI GLP++AD Sbjct: 946 KGNKILLHLGD---PYFFSKGALIRKIPGDYIKKQENFGQLIYQRLKTGDIVQGLPKIAD 1002 Query: 1144 LFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGER 1203 + EAR+PK A+L+ G + K T+ +V P + + P+ +L V + E Sbjct: 1003 ILEARKPKTEALLSTRQGFIKSIKYTEELIIIVTKPTISYECFTTSRPE--RLLVKKYES 1060 Query: 1204 VERGDVISDGPEAPHDILR--LRGVHAVTRYIVNE----------------VQDVYRLQG 1245 + G I++GP PH +L R H++ + E VQ +Y QG Sbjct: 1061 ISVGQPITEGPLNPHTLLYVYFRYFHSLGTLSIYEAAYRSIKKLQILLLMSVQAIYTSQG 1120 Query: 1246 VKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRD 1305 V I+ KHIE+IVR+M K I G ++FL G+ ++ ++ + N ++ K+G + Sbjct: 1121 VIISAKHIELIVREMTHKVYIEYPGKTNFLPGDIIDLNQAQYINLSIQNGHKLG--FRPI 1178 Query: 1306 LLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAY 1365 LLGITK+SL T+ F++AASFQETTRVLT AA+ GK D LRGLKEN I GRLIPAGTG+ Sbjct: 1179 LLGITKSSLKTDGFLAAASFQETTRVLTHAALQGKTDWLRGLKENAITGRLIPAGTGFYL 1238 Query: 1366 HQD 1368 QD Sbjct: 1239 DQD 1241 >UniRef50_B2X2C1 DNA-directed RNA polymerase n=1 Tax=Chlamydomonas moewusii RepID=B2X2C1_CHLMO Length = 903 Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 165/431 (38%), Positives = 248/431 (57%), Gaps = 19/431 (4%) Query: 593 NQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHE 652 NQ K + + + G TV +++ GF YA ++G S+G++D+ IP KK Sbjct: 103 NQTFDKGRLKNFVLWFFLKYGEHKTVRLVEELKTIGFQYATKAGISLGVEDLKIPPKKAA 162 Query: 653 IISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQ 712 +I EAE QF+ G +T ER+ ++ID W ++++ +++N + V+N Sbjct: 163 LIYEAEKLSLSTIRQFKRGEITEVERFQRLIDTWHRTSEQLKIEVIENFEGTDVLN---- 218 Query: 713 EEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQY 772 +YMMA SGARG+ +Q+RQL GMRGLM+ P G II+ PI +NFREGL + +Y Sbjct: 219 --------PVYMMAFSGARGNISQVRQLVGMRGLMSNPQGQIIDFPIRSNFREGLTLTEY 270 Query: 773 FISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVK 832 IS++GARKG+ DTAL+TAN+GYLTRRLVDVAQ ++++ DCGT GI + + EG Sbjct: 271 IISSYGARKGIVDTALRTANAGYLTRRLVDVAQHVIISTTDCGTTRGIFLNDMKEGNKTI 330 Query: 833 EPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDF 892 L++R++GRV A DV I +N + L+ ++ + VRS ++C T+ Sbjct: 331 YSLQNRLVGRVLARDVYNNQNIKI-ASKNMEISGDLAILIAQHH-KKIFVRSPLTCQTNK 388 Query: 893 GVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQV 952 VC CYG LA+G++++ GEA+G++AAQSIGEPGTQLTMRTFH GG S ++ I+ Sbjct: 389 LVCQLCYGWSLAQGNLVSIGEAVGIVAAQSIGEPGTQLTMRTFHTGGVFSGNVSD-QIKA 447 Query: 953 KNKGSIKLSNV---KSVVNSSGKLVITSRNTELKLIDEFGRTKES-YKVPYGAVLAKGDG 1008 G + +N K + GK+ +++ + F +TK S ++ G V K G Sbjct: 448 PFDGFVVYNNPIAGKLIRTPEGKIAFLTKDEGSFSVYRFSKTKRSGDRIDQGTVSTKAGG 507 Query: 1009 EQVAGGETVAN 1019 +V N Sbjct: 508 FDPRKATSVPN 518 >UniRef50_B2XTN4 DNA-directed RNA polymerase n=2 Tax=Heterosigma akashiwo RepID=B2XTN4_HETA4 Length = 1259 Score = 294 bits (753), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 162/400 (40%), Positives = 242/400 (60%), Gaps = 22/400 (5%) Query: 593 NQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHE 652 N+ + KK + ++L +R G+ +D + GF YA + G S+ I+D+ IP K E Sbjct: 14 NKVVTKKYLKEILFWAFRNFGMARAGFLSDSLKKLGFYYATQGGVSISIEDLKIPPLKTE 73 Query: 653 IISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQ 712 II + +V + G +T ERY ++ + W +++ + ++ L+ N D Sbjct: 74 IIDRTKKQVNNSELNCIRGELTEVERYQQLTNQWNTSSEVLKNKVVYYLK-----NFD-- 126 Query: 713 EEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQY 772 N +YMMA SGARG+ +Q+RQL G+RGLM+ P G II+ PIT NFREGL+V Y Sbjct: 127 -----PLNPVYMMAFSGARGNLSQVRQLVGIRGLMSGPTGDIIDIPITTNFREGLSVTDY 181 Query: 773 FISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVK 832 IS +GARKGL DTALKTA+SGYLTRRLVDVAQD+++ E DC T +GI++ +G Sbjct: 182 MISAYGARKGLVDTALKTADSGYLTRRLVDVAQDILIRETDCKTKKGILLFNFDDGSGNT 241 Query: 833 EPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDF 892 L+DR++GR+ A+D+ RN + + EN + V VRS ++C+ Sbjct: 242 FLLKDRLIGRILAKDIFDE-QKRFFAYRNQQISSLLAKRIYENKFNKVLVRSPITCELSR 300 Query: 893 GVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQV 952 VC CYG +LA G +++ GEA+GV+AAQSIGEPGTQLTMRTFH GG + AES+ Q+ Sbjct: 301 SVCQTCYGWNLAYGKLVDLGEAVGVVAAQSIGEPGTQLTMRTFHTGGVFT---AESNGQI 357 Query: 953 KNK--GSIKL-SNVKSVVNSS---GKLVITSRNTELKLID 986 +K G I+ +N+K+ + K++I +T++++++ Sbjct: 358 FSKISGQIRFPANLKACTGRTEQGDKVLIVENDTKIEIVN 397 Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 106/281 (37%), Positives = 145/281 (51%), Gaps = 35/281 (12%) Query: 1115 ISSGDTLARIPQESGGTKDITGGLPRVADLFEARR-------PKEPAILAEISGIVSFGK 1167 I S D+L + + T DI GLP+V ++ EARR P+ P I+ I++ Sbjct: 968 IKSDDSLGVLYYQRAQTGDIVQGLPKVEEILEARREKVFIRTPRYPGIIIAPEKIMT--- 1024 Query: 1168 ETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRL---- 1223 + K R + + Y E P + + E + G ++ +PH L+ Sbjct: 1025 -SAVKTRFLYISLYQKIKYCEFYP---DMLINENTFIIPGKPLNTRNASPHTSLKYLNFY 1080 Query: 1224 --------------RGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNA 1269 R + Y++N +Q VY QGV I+DKH+E+IV+Q+ K + Sbjct: 1081 YKIILNFSLHEAAYRSLRKSQSYLLNSIQSVYSSQGVDISDKHLEIIVKQIGSKVRVNTI 1140 Query: 1270 GSSDFLEGEQVEYSRVKIANRELEA--NGKVGATYSRDLLGITKASLATESFISAASFQE 1327 G S+ + GE + + N LE N Y LLGITKASL TESFISAASFQE Sbjct: 1141 GQSNIIPGEYIYLQHINKINTVLEKTKNSHYTIDYYPVLLGITKASLVTESFISAASFQE 1200 Query: 1328 TTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGY-AYHQ 1367 T RVL +AA+ GK D LRGLKENVI+GRLIPAGTG+ +Y Q Sbjct: 1201 TVRVLADAAIQGKADWLRGLKENVIIGRLIPAGTGFNSYDQ 1241 >UniRef50_C7BEK6 DNA-directed RNA polymerase n=1 Tax=Pedinomonas minor RepID=C7BEK6_PEDMN Length = 1240 Score = 292 bits (748), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 161/352 (45%), Positives = 219/352 (62%), Gaps = 19/352 (5%) Query: 591 IVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKK 650 N+ K + +++ R G T+ +++ GF +A ++G S+ IDD+ IP++K Sbjct: 7 FFNRCFDKSKLKGLISWSLRNYGEAVTLDLVEKLKEVGFLWATKAGISLSIDDLKIPKEK 66 Query: 651 HEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRD 710 ++ +AE +QF SG +T ER ++ID W R S +NL+ E V N Sbjct: 67 GALLLDAEDVATRASQQFLSGNLTTVERLQQLIDGW----HRTS----ENLKQEVVTNF- 117 Query: 711 GQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVL 770 + N +YMMA SGARG+ +Q+RQL GMRGLMA P G II+ PI +NFREGL + Sbjct: 118 ---RRTDPLNPVYMMAFSGARGNISQVRQLVGMRGLMADPQGRIIDFPIRSNFREGLTLT 174 Query: 771 QYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGD 830 +Y IS +GARKG+ DTAL+TA SGYLTRRLVDVAQ +VV+ DC T +GI +T + +G Sbjct: 175 EYVISCYGARKGIVDTALRTATSGYLTRRLVDVAQHVVVSLYDCETEQGIPLTSLKQGTK 234 Query: 831 VKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDT 890 PL +R+LGRV AE+V PG A PRNT + E L + + + + VRS + C + Sbjct: 235 TLLPLSERILGRVLAEEV--PGIA----PRNTCISEYLSYKLSQ-AKETLLVRSPLLCKS 287 Query: 891 DFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAAS 942 GVC CYG LA +++ GEA+G+IAAQSIGEPGTQLTMRTFH GG S Sbjct: 288 RNGVCQLCYGWSLAHNELVSIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFS 339 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 106/330 (32%), Positives = 148/330 (44%), Gaps = 59/330 (17%) Query: 1042 DGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKI-----VDAQGNDVLIPGTDMP 1096 D + ++ LTG+ R+ G +RP +I V G + I + Sbjct: 931 DSKMLSINESHLTGVFVPTTQSVGSRSFLGSLIRPGTEILPKLTVSESGQILSIRKNTIL 990 Query: 1097 AQYFLP----GKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKE 1152 + +P KA + G I G L + + T DI G+PR+ LFEAR + Sbjct: 991 VRKAVPILFSSKANFHVFHGDFIDKGLPLITLTYKRLTTGDIVQGIPRIEQLFEAR--QT 1048 Query: 1153 PAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISD 1212 +L E + + K + RL Sbjct: 1049 TTVLHE--QLHELFETYKTRMRL------------------------------------- 1069 Query: 1213 GPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSS 1272 D+ + + R +++ +Q VY+ QGV I+DKH+EVIVRQM I+ G + Sbjct: 1070 ------DLAARKSFQKIQRILIDSIQRVYQSQGVTISDKHLEVIVRQMTSTVRILEGGRT 1123 Query: 1273 DFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVL 1332 L GE ++ N ++ A Y LLGITKASL TESFISAASFQETTR L Sbjct: 1124 RLLRGELKSIDWIEKINLGIDIQK---AEYEPILLGITKASLETESFISAASFQETTRTL 1180 Query: 1333 TEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362 + AA+ G+ D LRGLKENVI+G +PAGTG Sbjct: 1181 SRAAIEGRTDFLRGLKENVILGHRVPAGTG 1210 >UniRef50_Q20EX3 DNA-directed RNA polymerase subunit beta'' n=1 Tax=Oltmannsiellopsis viridis RepID=RPOC2_OLTVI Length = 1859 Score = 292 bits (747), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 158/398 (39%), Positives = 229/398 (57%), Gaps = 24/398 (6%) Query: 573 TVGRAILWMIVPKGLPYS----------IVNQALGKKAISKMLNTCYRILGLKPTVIFAD 622 ++ +A W+ V PY N+ K ++ C G + TV + Sbjct: 47 SLKKATPWLRVSLERPYKYRTTLNARPVFFNRCFDKGRFKSLILWCILNFGEQKTVELVE 106 Query: 623 QIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKV 682 Q+ G+ A +G S+GIDD+ IP K ++++EA+ E I ++ G VT+ E++ ++ Sbjct: 107 QLKDIGYHQATLAGVSLGIDDLKIPNSKAQLVAEAQLENQLILQEDLRGNVTSIEKFQRL 166 Query: 683 IDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAG 742 ID W ++ + ++ + ++N +YMMA SGARG+ +Q+RQL G Sbjct: 167 IDTWHLTSETLKDNVIKAFRNTDILN------------PVYMMAFSGARGNVSQVRQLVG 214 Query: 743 MRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVD 802 MRGLMA P G II PI +NFREGL + +Y IS +GARKG+ DTAL+TA SGYLTRRLVD Sbjct: 215 MRGLMADPQGQIINFPIQSNFREGLTLTEYVISCYGARKGVVDTALRTATSGYLTRRLVD 274 Query: 803 VAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNT 862 VAQ ++V + DC T GI++ + G L+ R++GRV+AED+ T V RN Sbjct: 275 VAQHVIVYQFDCQTTRGILLNTIKVGNTTSISLQKRLVGRVSAEDIYNSKTNTKEVSRNQ 334 Query: 863 LLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQS 922 + + + +N + V VRS ++C GVC CYG LA+G +++ GEA+GV+AAQS Sbjct: 335 EITPILAEQISQNH-NQVLVRSALTCQAKHGVCQLCYGWSLAQGSLVSLGEAVGVVAAQS 393 Query: 923 IGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL 960 IGEPGTQLTMRTFH GG S E IQ + G ++ Sbjct: 394 IGEPGTQLTMRTFHTGGVFSGDVME-QIQAPHNGIVEF 430 Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 102/277 (36%), Positives = 140/277 (50%), Gaps = 67/277 (24%) Query: 1131 TKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMI 1190 T DI G+P++ +LFEAR ISG + +L I Sbjct: 1635 TGDIVQGIPKIEELFEAR----------ISGTL--------HNQLAI------------- 1663 Query: 1191 PKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKIND 1250 +FE + + S A + R++ + IV V +VY+ QGV I D Sbjct: 1664 -------IFENYKQK----FSSAYAARKSLERIQQI------IVENVLNVYQSQGVTIAD 1706 Query: 1251 KHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGIT 1310 KH+E+IVRQM K I+ +G S L GE V V+ AN+ + A Y+ L+GIT Sbjct: 1707 KHVEIIVRQMTSKVRILESGRSGLLRGELVTLESVENANKSIHGQK---AEYAPVLVGIT 1763 Query: 1311 KASLATE-SFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDR 1369 KA+L + SFISAASFQETTR+L+ AA+ K D LRGLKENVI+G+LIPAGTG+ Sbjct: 1764 KAALDIDKSFISAASFQETTRILSRAAIERKTDFLRGLKENVILGQLIPAGTGF------ 1817 Query: 1370 MRRRAAGEAPAAPQVTAEDASASLAELLNAGLGGSDN 1406 + +P P + S + +L+N L SDN Sbjct: 1818 ----SVSFSPEDP-----NHSKKVVKLVNQYLFSSDN 1845 >UniRef50_Q19VA0 DNA-directed RNA polymerase subunit beta'' n=2 Tax=Streptophyta RepID=RPOC2_CHLAT Length = 1396 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 150/356 (42%), Positives = 217/356 (60%), Gaps = 14/356 (3%) Query: 593 NQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHE 652 N+ + K I + + G T +++ GF +A ++G S+ +DD+ IP K Sbjct: 7 NRTIEKGEIRRFIAWFIFHHGTARTTQMVERLKVLGFRHATKAGVSLSVDDLKIPPSKRW 66 Query: 653 IISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDN-LQTETVINRDG 711 ++ +AE E+ + Q+Q G +TA ER+ KVID W + ++ + ++ + LQT+T+ Sbjct: 67 LLEDAEEEIQFTERQYQKGKITAVERFQKVIDTWHSTSETLKDEVVQHFLQTDTL----- 121 Query: 712 QEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQ 771 N +YMMA SGARG+ +Q+RQL GMRGLM+ P G II+ PI +NFREGL V + Sbjct: 122 --------NPVYMMAFSGARGNISQVRQLVGMRGLMSDPQGQIIDLPIRSNFREGLTVTE 173 Query: 772 YFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDV 831 Y IS +GARKGL DTAL+TA+SGYLTRRLVDVAQ +++ E DCGT GI + P+ + + Sbjct: 174 YVISCYGARKGLVDTALRTADSGYLTRRLVDVAQHVIIRETDCGTLSGISLMPMKDQDKI 233 Query: 832 KEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTD 891 L +R++GRV AE + + RN + + + + VRS ++C + Sbjct: 234 IFSLEERLIGRVLAESIYSIQEKKYVARRNQDISANLATQIVRVKKNNIFVRSPLTCKAN 293 Query: 892 FGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAE 947 VC CYG LA G +++ GEA+G+IAAQSIGEPGTQLTMRTFH GG + A+ Sbjct: 294 RSVCQLCYGWSLAHGSLVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTGNVAK 349 Score = 186 bits (472), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 126/330 (38%), Positives = 168/330 (50%), Gaps = 64/330 (19%) Query: 1057 SSLVVLDSAERTAGGKDLRPALKIVDA-QGNDVLIPGTDMPAQ----------------- 1098 S L++ +S T KD LK+ D D + PG +P Sbjct: 1058 SFLIMNESDHITLSLKDSSKNLKLGDLLHKEDFIAPGVRLPQSGQIIQLQSDQVTIRIAR 1117 Query: 1099 -YFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILA 1157 Y + +A++ + G + SGDTL + E T DI GLPR+ +L EARR Sbjct: 1118 PYLVSSEAVLHVNHGDLVKSGDTLVMLIFEQAKTGDIVQGLPRIEELLEARR-------- 1169 Query: 1158 EISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAP 1217 TKG + L P + D E + + R+ + R R Sbjct: 1170 -----------TKGLKPL---PNNLHDRLESLFFQCRK--KYGNHRAAR----------- 1202 Query: 1218 HDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEG 1277 + + + ++VNE+Q VY+ QGV I+DKHIEVIVRQM K I G + L G Sbjct: 1203 ------KSLEEIQLFLVNEIQSVYKSQGVSISDKHIEVIVRQMTSKVVIEEGGDTTLLPG 1256 Query: 1278 EQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAV 1337 E +E R++ N+ N + A Y +LGITKASL TESFISAASFQETTRVLT+AA+ Sbjct: 1257 ELIELHRIENINK----NVSIHAQYKPVVLGITKASLNTESFISAASFQETTRVLTKAAI 1312 Query: 1338 AGKRDELRGLKENVIVGRLIPAGTGYAYHQ 1367 GK D L+GLKENVI+GRLIPAGTG+ H+ Sbjct: 1313 EGKTDWLKGLKENVIIGRLIPAGTGFNEHE 1342 >UniRef50_Q4G3A5 DNA-directed RNA polymerase subunit beta'' n=1 Tax=Emiliania huxleyi RepID=RPOC2_EMIHU Length = 1267 Score = 290 bits (743), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 148/355 (41%), Positives = 219/355 (61%), Gaps = 20/355 (5%) Query: 589 YSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPE 648 +S N + K+++ ++ + G+ + I AD++ F +A +SG S+ ++D+ +P Sbjct: 9 HSFENNLINKRSLKDLMYQAFLNYGIVKSSIIADRVKNLTFHFATQSGVSLSVEDLRVPA 68 Query: 649 KKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVIN 708 KK E+I EV Q++++ G +T+ E++ K IDIW AN+ + ++ + +N Sbjct: 69 KKRELIGLTRNEVETTQKRYEIGSITSVEKFQKTIDIWNNANNFLKDDVLTYFRESDPLN 128 Query: 709 RDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLN 768 +Y+MA SGARG+ +Q+RQL GMRGLM+ P G II+ PI +NFREGL Sbjct: 129 ------------PLYIMAFSGARGNISQVRQLVGMRGLMSNPQGQIIDLPIKSNFREGLT 176 Query: 769 VLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEG 828 V +Y IS++GARKGL DTAL+TA+SGYLTRRLVDVAQD++V E DCGT EG+ T + Sbjct: 177 VTEYIISSYGARKGLVDTALRTADSGYLTRRLVDVAQDIIVRESDCGTTEGLWATELASN 236 Query: 829 GDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEE-NSVDAVKVRSVVS 887 + LR GR+ AE + ++ P NT + E + L+ +KVRS ++ Sbjct: 237 NFLN--LR----GRLLAEPIFTQ-EGNLFAPANTEITETFLQTLKTLKDHSPIKVRSSLT 289 Query: 888 CDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAAS 942 C + VC +CYG L+ +++ GEA+G++AAQSIGEPGTQLTMRTFH GG S Sbjct: 290 CTSTRSVCQNCYGWHLSHSKLVDLGEAVGIVAAQSIGEPGTQLTMRTFHTGGVFS 344 Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 118/316 (37%), Positives = 171/316 (54%), Gaps = 20/316 (6%) Query: 1099 YFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAE 1158 Y + I+ + +GD LA + E+ T DI GLP+V +L EAR+ A+LA Sbjct: 948 YLISAGTILHATSNNLVKAGDILATLVYETIKTTDIVQGLPKVEELLEARKVLHNALLAP 1007 Query: 1159 ISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWR-QLNVFEGERVERGDVISDGPEAP 1217 G G+ + + +D + P + + N G+ VE ++DG +P Sbjct: 1008 CPGYAYVRFNKHGESTVQLIGLDNEVQTLALKPGIKTKFN--SGDFVEVSSALTDGLISP 1065 Query: 1218 HDILRLRGVHAVTRY----------------IVNEVQDVYRLQGVKINDKHIEVIVRQML 1261 H L + RY ++ E+Q YR QGV I DKH+E+IV+QM Sbjct: 1066 HTKLETLFSYFKNRYTSFEACKLSFKLLQLFLIGEIQRTYRSQGVDIADKHVELIVKQMT 1125 Query: 1262 RKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFIS 1321 K I ++G++ FL GE + + ++ E G++ +Y LLGITKASL ++SFIS Sbjct: 1126 SKVCIEDSGTTTFLPGEVLNFQKMADIALVAENKGEIPPSYVPLLLGITKASLNSDSFIS 1185 Query: 1322 AASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMR-RRAAGEAPA 1380 AASFQETTRVLTEAA+ G++D L GLKENVI+GRLIPAGTG+ Y +++ R R GE A Sbjct: 1186 AASFQETTRVLTEAAIEGRKDWLTGLKENVIIGRLIPAGTGFNYLENQERLAREKGEIDA 1245 Query: 1381 APQVTAEDASASLAEL 1396 A+ S ++ +L Sbjct: 1246 TFHREAKPLSENILDL 1261 >UniRef50_Q1KVX8 DNA-directed RNA polymerase subunit beta'' n=2 Tax=Scenedesmus obliquus RepID=RPOC2_SCEOB Length = 2552 Score = 290 bits (743), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 144/334 (43%), Positives = 210/334 (62%), Gaps = 19/334 (5%) Query: 613 GLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGL 672 G T+ F +++ GF YA + G S+GIDD+ IP K +I++AE +V++ F++ Sbjct: 146 GQYKTIQFLEKLKEFGFGYATKGGLSLGIDDLKIPNNKISLIAKAETKVSKDLMDFRNAK 205 Query: 673 VTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARG 732 +T ER ++I W ND + + ++ +T + FN IYMMA SGARG Sbjct: 206 ITGVERMQRLIYTWNQTNDMLKQEVIKYFETMDL------------FNPIYMMAFSGARG 253 Query: 733 SAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTAN 792 + +Q+RQL GMRGLM+ P G II+ PI +NFREGL + +Y IST+GARKG+ DTAL+TA Sbjct: 254 NMSQVRQLVGMRGLMSDPQGQIIDFPIQSNFREGLTLTEYLISTYGARKGIVDTALRTAT 313 Query: 793 SGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVL--- 849 +GYLTRRLVDVAQ ++V++ DC T GI + + E ++R++GRV A+D+ Sbjct: 314 AGYLTRRLVDVAQHVIVSQFDCETSRGIFLFDMKEANKTIYSFQNRLVGRVLAQDIFSTK 373 Query: 850 ---KPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARG 906 K ++ RN + + + + + A+ VRS ++C+T +C CYG L++G Sbjct: 374 EINKISDKKLIASRNQEIDSKLAFAISKVTKKAL-VRSPLTCETPRLICQLCYGWSLSQG 432 Query: 907 HIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGA 940 +++ GEA+GVIAAQSIGEPGTQLTMRTFH GG Sbjct: 433 KLVSVGEAVGVIAAQSIGEPGTQLTMRTFHTGGV 466 Score = 126 bits (316), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 89/247 (36%), Positives = 127/247 (51%), Gaps = 54/247 (21%) Query: 1120 TLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITP 1179 TLA +SG DI G+P+V LFEAR +G+ L P Sbjct: 2350 TLAYQTVQSG---DIVQGIPKVEQLFEARTT------------------IQGRLFLSSLP 2388 Query: 1180 V--DG-SDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNE 1236 + G + Y+ M+P E+ R + + + IV+ Sbjct: 2389 ILLKGIFERYKTMLP---------LEQAVRQSFL-----------------KIQQLIVDG 2422 Query: 1237 VQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANG 1296 VQ VYR QGV I DKH+EVIVRQM K I++ + F GE V V+ N+ L Sbjct: 2423 VQRVYRSQGVSIVDKHLEVIVRQMTTKVQILHGAQTGFFPGELVNLDLVERINKFLL--- 2479 Query: 1297 KVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRL 1356 V Y +LGIT++SL +SF+SA+SFQ+TT++L A+++ K+D L+GLKEN++VG L Sbjct: 2480 -VKIRYEPVVLGITRSSLEVDSFLSASSFQQTTKILALASISRKKDFLKGLKENILVGNL 2538 Query: 1357 IPAGTGY 1363 +P+GTGY Sbjct: 2539 MPSGTGY 2545 >UniRef50_A0T0D9 DNA-directed RNA polymerase subunit beta'' n=1 Tax=Phaeodactylum tricornutum RepID=RPOC2_PHATR Length = 1415 Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 143/359 (39%), Positives = 218/359 (60%), Gaps = 12/359 (3%) Query: 589 YSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPE 648 Y N +GKK + ++L + AD++ Y GF YA+++G S+ I+D+ IP Sbjct: 4 YKYQNTLIGKKQLRQLLAWSFTNYDSMQACALADELKYLGFKYASQAGISISIEDLKIPF 63 Query: 649 KKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVIN 708 K+ ++ +A E+ ++ + G +T ER+ K+ID W+ ++ + + ++ + N Sbjct: 64 VKNLMLEKANQEIINAEKIYLKGKITDVERFQKIIDTWSLTSESLKEQVIYYFK-----N 118 Query: 709 RDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLN 768 D NS+Y+MA SGARG+ +Q+RQL GMRGLM+ P G I+ PI NFREGL Sbjct: 119 YD-------PLNSVYIMAFSGARGNLSQVRQLVGMRGLMSDPSGEIMNLPIKKNFREGLT 171 Query: 769 VLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEG 828 + Y +S +GARKG+ DTALKTANSGYLTRRL+DV QD+++ E DC T+ + + E Sbjct: 172 ITDYLMSGYGARKGIVDTALKTANSGYLTRRLIDVGQDVLIREKDCLTNHSFLFSVSNEE 231 Query: 829 GDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSC 888 + ++LGRV ++ + P T ILVP T + + + +E +V +RS ++C Sbjct: 232 LKSLNLIYQKILGRVLSKPIHDPKTNRILVPAGTQITPKLIEKFKEYNVKKFYIRSPLTC 291 Query: 889 DTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAE 947 + +C +CYG DLA ++++ GEAIG++A QSIGEPGTQLTMRTFH GG + A + Sbjct: 292 NLYRAICQNCYGWDLANENLVDIGEAIGILAGQSIGEPGTQLTMRTFHTGGIFTSEARQ 350 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 103/294 (35%), Positives = 151/294 (51%), Gaps = 60/294 (20%) Query: 1115 ISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRR 1174 I G+TL + E T DI GLPR+ ++ EAR+ + I I T K+ Sbjct: 1132 IEEGETLGLLNLEKEITGDIVQGLPRIEEILEARKKN-----SNIKRI-----PTSQKKG 1181 Query: 1175 LVITPVDGSDPYEEMIPKWRQL--NVFEGERVERGDVISDGPEAPHDILRL--------- 1223 L++ +E +R+L N+ E E+V PH +L++ Sbjct: 1182 LLVQKSSLDTNFE-----FRKLGTNIKENEKVN-----------PHKLLKVYFNYYGWIK 1225 Query: 1224 -----------------------RGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM 1260 + V +I++ VQ VY+ QGV INDKH+EVI++QM Sbjct: 1226 PFICDQKEEIKYARLIKNYEGSYKSFKKVQSFILDSVQAVYQSQGVIINDKHLEVIIKQM 1285 Query: 1261 LRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFI 1320 K I G++ L E ++ ++ N+ +++ GK A Y LLGITKA+L SFI Sbjct: 1286 TTKVLITYEGNTPLLRREVIDLYHIQYINQIIQSQGKQSACYVPLLLGITKAALNNPSFI 1345 Query: 1321 SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRA 1374 SAASFQETTRVLT+AA+ G+ D LRGLKEN+I+G LIPAGTG +++ ++ + Sbjct: 1346 SAASFQETTRVLTKAAIEGRIDWLRGLKENIIIGHLIPAGTGSQNYRNCFKKES 1399 >UniRef50_B7T1S4 DNA-directed RNA polymerase n=1 Tax=Vaucheria litorea RepID=B7T1S4_VAULI Length = 1275 Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 148/368 (40%), Positives = 222/368 (60%), Gaps = 15/368 (4%) Query: 593 NQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHE 652 N+ + KK I ++++ + G AD+I GF Y+ ++G S+ I+D+ +P K Sbjct: 10 NRTIDKKQIKQIMSWAFNDFGTMKASYLADKIKDIGFKYSTKAGLSINIEDLKVPPIKKH 69 Query: 653 IISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQ 712 +I A +V + + + + G +T ER+ KVI W ++ + ++ + Sbjct: 70 VIKYANRKVIDAEIEVERGKITEVERFQKVIKTWNNTSETLKDQVISYFR---------- 119 Query: 713 EEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQY 772 K NSIY+MA SGARG+ +Q+RQL GMRGLMA P+G II PI NFREGL + Y Sbjct: 120 --KTDPLNSIYIMAFSGARGNISQVRQLIGMRGLMADPNGQIINLPIITNFREGLTITDY 177 Query: 773 FISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVK 832 IS++GARKGL DTAL+TA+SGYLTRRL+DVAQD++ E +C T GI ++ V++ Sbjct: 178 IISSYGARKGLVDTALRTADSGYLTRRLIDVAQDMITREKNCNTKNGINLSKVVDANRTI 237 Query: 833 EPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDF 892 L+DR++GRV A + + + + + + + ++ V VRS ++C + Sbjct: 238 ITLKDRIVGRVLAFPIDNKKINQRIANSDQAITPKLAQQISDLNLKRVIVRSPLTCSSSR 297 Query: 893 GVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQV 952 +C CYG +LA G++I+ GEA+G+IAAQSIGEPGTQLTMRTFH GG + AE S Q+ Sbjct: 298 SICQQCYGWNLAYGNLIDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFT---AEPSRQI 354 Query: 953 KNKGSIKL 960 + + S K+ Sbjct: 355 RAQYSGKI 362 Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 116/294 (39%), Positives = 157/294 (53%), Gaps = 30/294 (10%) Query: 1099 YFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAE 1158 Y A ++ G I+ G+ L ++ E T+DI GLP+V ++ EAR+PK + LA Sbjct: 943 YLFSEGAQIKKRPGDLINKGEKLGQLIYERVRTEDIIQGLPKVEEILEARKPKIESCLAV 1002 Query: 1159 ISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLN----VFEGER--VERGDVISD 1212 GIV K + + I P + YE + ++N V G+ + G ++D Sbjct: 1003 RPGIVLDLKYKSSELYIWIAP----NNYELSQKDFYKINYSQRVLLGQFDFINVGHPLND 1058 Query: 1213 GPEAPHDILR------------------LRGVHAVTRYIVNEVQDVYRLQGVKINDKHIE 1254 P H +L R + ++N VQ VY QGV I+DKHIE Sbjct: 1059 DPINSHTLLNTYFSYYQSLQVFSDYKSAYRSFRKIQSMLLNSVQAVYYSQGVFISDKHIE 1118 Query: 1255 VIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASL 1314 +I++QM K I+ +G S L E VE +V N L+ K A + +LGITKASL Sbjct: 1119 IIIKQMTGKVQIITSGDSPLLSDELVELKQVYYINNCLKQ--KKHALFKPIILGITKASL 1176 Query: 1315 ATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD 1368 T SFISAASFQ TT++LTEAA+ GK D LRGLKENVIVGRLIPAGTG+ + D Sbjct: 1177 KTNSFISAASFQHTTKILTEAAIRGKTDWLRGLKENVIVGRLIPAGTGFNTYND 1230 >UniRef50_Q9TL04 DNA-directed RNA polymerase subunit beta'' n=1 Tax=Nephroselmis olivacea RepID=RPOC2_NEPOL Length = 1463 Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 175/462 (37%), Positives = 254/462 (54%), Gaps = 26/462 (5%) Query: 588 PYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIP 647 P N+ K I +++ GL TV + + GF YA R+G S+GI+D+ IP Sbjct: 25 PPIFFNRTADKGMIKRLIAWFLVHYGLADTVSMIEDLKQVGFQYATRAGISLGIEDLRIP 84 Query: 648 EKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDN-LQTETV 706 K ++ EA E+ ++ ++Q G V+ ER+ KVID W ++ + +++N L T+ Sbjct: 85 PTKPRLLQEAHREINRMEFRYQQGYVSLVERFQKVIDTWNGTSELLKDDVVENFLATD-- 142 Query: 707 INRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREG 766 N +YMMA SGARG+ +Q+RQL GMRGLM+ P G II+ PI +NFREG Sbjct: 143 -----------PLNPVYMMAFSGARGNLSQVRQLVGMRGLMSNPQGEIIDLPIRSNFREG 191 Query: 767 LNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVI 826 L V +Y IS +GARKGL DTAL+TANSGYLTRRLVDVAQD+V+ C +++ Sbjct: 192 LTVTEYIISCYGARKGLVDTALRTANSGYLTRRLVDVAQDIVIRMTSCSPSAYPLISFTK 251 Query: 827 EGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVV 886 G +V PL +R+LGRV A I P + E L++ + + + VRSV+ Sbjct: 252 SGKEVVYPLEERLLGRVLAIGAFNQEGELISGPDTAISQEIAVQLMDCDPKE-ILVRSVL 310 Query: 887 SCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAA 946 C + G+C CYG +L G I++ GEA+G+IAAQSIGEPGTQLTMRTFH GG + Sbjct: 311 LCKSKRGLCRLCYGWNLGTGTIVSIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFA-GGV 369 Query: 947 ESSIQVKNKGSIKLS---NVKSVVNSSGKL-VITSRNTELKLIDEFGRTKESYKVPYGAV 1002 + I+ + G + + K V G+ ++ S E+ E +T + + G V Sbjct: 370 TNEIRAPHAGLVHYPRPIHPKWVRTRHGQFGILISEKIEIIFEHESKKTIQVFDA--GTV 427 Query: 1003 LAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQ 1044 L +GE+V + + H T V+G+ +DG+ Sbjct: 428 LTIHEGEKVHTNQLIGEIPAHG----TLVTGWRSLKSGVDGE 465 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 87/236 (36%), Positives = 120/236 (50%), Gaps = 45/236 (19%) Query: 1131 TKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMI 1190 T DI GLP++ ++ EARR K I+ ++ + Sbjct: 1156 TGDIVQGLPKIEEILEARRKKGNEII--------------------------RSNLQDFV 1189 Query: 1191 PKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKIND 1250 ++ Q N+ EG + R + A+ I+ VQ VYR QGV+I+D Sbjct: 1190 QQFYQDNLDEGFSRKYAST--------------RTMRAMQVLILRRVQLVYRSQGVQISD 1235 Query: 1251 KHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGIT 1310 KH+E+I +M + + A + L GE +E R + N+ G+ Y +LGIT Sbjct: 1236 KHLEIISLRMTSRVLVEKAYGTGILPGEIIEKRRADMLNQ-----GRTRIRYCPIVLGIT 1290 Query: 1311 KASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYH 1366 KASL T+ FIS+ASFQETTRVLT+A + GK D L GLKENVI+GRLIPAG G H Sbjct: 1291 KASLTTKGFISSASFQETTRVLTQAVLQGKSDWLLGLKENVILGRLIPAGVGIYGH 1346 >UniRef50_B2X258 DNA-directed RNA polymerase n=2 Tax=cellular organisms RepID=B2X258_9CHLO Length = 2835 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 171/477 (35%), Positives = 252/477 (52%), Gaps = 63/477 (13%) Query: 591 IVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKK 650 +N + K + + C+R G + TV ++ GF YA ++G S+ IDD+ IP K Sbjct: 148 FLNCSFDKGRLKSYIFWCFRHYGQRRTVNLLAELKSLGFGYATKAGISISIDDLKIPPTK 207 Query: 651 HEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRD 710 +++S AE + Q++ G +T ER+ V++ W ++ + + M+++ + V+N Sbjct: 208 AKLLSSAELDQKTTALQYEKGQITNLERFQNVLETWHNTSELLKEEMINHFKETDVLN-- 265 Query: 711 GQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVL 770 +YMMA SGARG+ +Q+RQL GMRGLM+ P G I++ PI +NFREGL + Sbjct: 266 ----------PVYMMAFSGARGNVSQVRQLVGMRGLMSDPQGQILDYPIRSNFREGLTLT 315 Query: 771 QYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGD 830 +Y IS +GARKG+ DTAL+TA++GYLTRRLVDVA +VV+ DCGT +G+++ + G Sbjct: 316 EYVISCYGARKGVVDTALRTADAGYLTRRLVDVAHQVVVSNFDCGTQKGLLLMEMKSGNK 375 Query: 831 VKEPLRDRVLGRVTAEDVLKPG--------------------TADILVPRNTLLHEQWCD 870 PL R+LGRV A D+ + IL +N L + + Sbjct: 376 KLFPLNQRLLGRVLAADIFSNSPISSEKKGEREKEENSFYETQSKILEKKNIKLFSRNTE 435 Query: 871 LLEENSV------DAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIG 924 + EE + D V VRS + C +C CYG L+ G +++ GEA+G++AAQSIG Sbjct: 436 INEELATKIAEIRDRVYVRSPLGCILKKKICKLCYGWSLSDGQLVSVGEAVGILAAQSIG 495 Query: 925 EPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNV---KSVVNSSGKLVITS---- 977 EPGTQLTMRTFH GG S E I G I+ + V +S GK+V + Sbjct: 496 EPGTQLTMRTFHTGGVFSGEDIE-QITASFDGKIEFTAPVPGSMVRDSQGKIVFLTKGKG 554 Query: 978 ----RNTELKLIDEFGRTKES------------YKVPYGAVLAKGDGEQVAGGETVA 1018 R LI R K S YK+P ++L + ++V GE VA Sbjct: 555 ELILRQIPSGLISSL-REKSSALLQSKEEKTVRYKIPESSLLYVRNKQKVIKGELVA 610 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 91/264 (34%), Positives = 134/264 (50%), Gaps = 43/264 (16%) Query: 1100 FLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEI 1159 F K + ++G +S + +P T DI G+P++ LFEAR Sbjct: 2581 FFSPKCVFHAQNGEFVSQNVPVLSLPYSKKKTGDIVQGIPKIEQLFEAR----------- 2629 Query: 1160 SGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHD 1219 +SF E + E+ +P ++ ++ + + P Sbjct: 2630 ---LSFAGEKE----------------EDSLPNLLKI-LYHNYK----------QKLPIK 2659 Query: 1220 ILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQ 1279 I + + V+ + N +Q VYR QGV ++DKHIEVIV+QM I++ G+S+F GEQ Sbjct: 2660 IAVRKAIKIVSTVLANSIQRVYRSQGVSVSDKHIEVIVKQMTNCVQIIHPGTSNFFRGEQ 2719 Query: 1280 VEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAG 1339 + +V+ N + K+ Y LLGI+KASL +SF+SAASFQ TTRVL AA Sbjct: 2720 LSLLQVESWNSKKPKRQKI--RYEPLLLGISKASLQVDSFLSAASFQYTTRVLKNAAFER 2777 Query: 1340 KRDELRGLKENVIVGRLIPAGTGY 1363 K D L GLKEN+I+G +IPAGTG+ Sbjct: 2778 KIDFLNGLKENIIIGNIIPAGTGF 2801 >UniRef50_C7BEV3 DNA-directed RNA polymerase n=1 Tax=Parachlorella kessleri RepID=C7BEV3_CHLKE Length = 1500 Score = 288 bits (736), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 177/485 (36%), Positives = 264/485 (54%), Gaps = 54/485 (11%) Query: 591 IVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKK 650 N K + +++ + G K TV F ++I GF A +G S+G+DD+ IP +K Sbjct: 14 FFNACFDKNQLKNLISWFIKNSGEKITVDFLERIKQIGFHQATVAGVSLGLDDLQIPSQK 73 Query: 651 HEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRD 710 +IS+A+AE++ Q+Q SG +T+ E+ ++I W ++ + K + + +N Sbjct: 74 SLLISQAKAEISLFQQQNSSGNLTSVEKSQQMISTWNQTSEVLRKTTVQQFKNNNPVN-- 131 Query: 711 GQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVL 770 +YMMA SGARG+ +Q+RQL MRGLMA P G+I+E PI +NFREGL + Sbjct: 132 ----------PVYMMAFSGARGNISQVRQLVAMRGLMADPQGAILEFPIQSNFREGLTLT 181 Query: 771 QYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGD 830 +Y IS +GARKGL DTAL+TA SGYLTRRLVD AQ ++V+ DCGT +G+ + Sbjct: 182 EYLISCYGARKGLVDTALRTATSGYLTRRLVDAAQHVIVSTKDCGTTQGLRLK------- 234 Query: 831 VKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDT 890 + L ++GRV ++D++ + RN +++ L+ +N V V VRS ++C Sbjct: 235 -NKDLEQHLVGRVLSKDLVLKQIFHL--NRNQIINPTLAKLISKN-VKEVFVRSPLTCQA 290 Query: 891 DFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRA-AAESS 949 + +C CYG +LA G++++ GEA+GVIAAQSIGEPGTQLTMRTFH GG + + A Sbjct: 291 ENSICQLCYGWNLAHGNLVSIGEAVGVIAAQSIGEPGTQLTMRTFHTGGVGTFSDQAMKY 350 Query: 950 IQVKNKGSIKLSN---VKSVVNSSGKLVI-------TSRNTELKLIDEFGRTKESY---- 995 G I+ + V GK+V T++N LKL F + Y Sbjct: 351 FIAPYDGIIEYTAGLPGHFVRTPHGKIVYMLKNSGNTTQNIILKL-KSFDTKQPKYLIKK 409 Query: 996 -KVPYGAVLAKGDGEQVAGGETVANWDPH----------TMPVITEVSGFVRFTDMIDGQ 1044 ++P G++L GE V G+ +A T PV + + G + F M Sbjct: 410 QELPAGSILLVRHGETVQTGQVLAQSSQFKKSKQKMPESTYPVFSSIDGQIYFESM---- 465 Query: 1045 TITRQ 1049 TI +Q Sbjct: 466 TILKQ 470 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 90/283 (31%), Positives = 136/283 (48%), Gaps = 36/283 (12%) Query: 1099 YFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAE 1158 + + I+ + I D L + T+DI G+P++ LFEAR I+ Sbjct: 1251 FLASARGIIHIFQHDLIQKNDLLVTLKSRRLQTEDIVQGIPKIEQLFEARETHGGTIIRN 1310 Query: 1159 ISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPH 1218 + K+ + S Y+ +V ++ ++ EA Sbjct: 1311 -------SVHNRLKKYFI-----SSLKYK---------------KVSIHNLHTNLSEAVA 1343 Query: 1219 DILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGE 1278 D L + + Y+V + Y QGVK++ KHIE+IVRQM + I+ G S L GE Sbjct: 1344 DSL-----NKIQFYLVQSILQAYSSQGVKLSQKHIEIIVRQMTTRVRILAGGDSGLLPGE 1398 Query: 1279 QVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVA 1338 + + R++ N +L + GK A Y +LGITK+ L +ESF+ +ASFQE +RVL +A+ Sbjct: 1399 LIPFIRIQKLNNQLCSLGKRPAIYEPIILGITKSVLQSESFLLSASFQEVSRVLVRSALT 1458 Query: 1339 GKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAA 1381 K D LRGL ENVI+G+LIP GTG + G AP + Sbjct: 1459 KKTDFLRGLHENVILGQLIPTGTGLV----SFSKNKVGSAPIS 1497 >UniRef50_C7BEC5 DNA-directed RNA polymerase n=1 Tax=Oocystis solitaria RepID=C7BEC5_9CHLO Length = 1416 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 139/328 (42%), Positives = 212/328 (64%), Gaps = 19/328 (5%) Query: 615 KPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVT 674 K T+ +++ GF++A +G S+ IDD+ IP K E++ E++ + +++++ G +T Sbjct: 29 KNTIDLLEKLKQIGFSFATYAGVSLSIDDLKIPPNKGELLVESQKALNLSKKEYEKGNIT 88 Query: 675 AGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSA 734 A E + ++ID+W ++ + + ++ + ++ ++N +YMMA SGARG+ Sbjct: 89 AVESFQQIIDLWYRTSEVLKQNVIQHFRSTDILN------------PVYMMAFSGARGNI 136 Query: 735 AQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSG 794 +Q+RQL GMRGLMA P G I++ PI +NFREGL + +Y IS +GARKGL DTAL+TAN+G Sbjct: 137 SQVRQLVGMRGLMADPQGQILDFPIRSNFREGLTLTEYIISCYGARKGLVDTALRTANAG 196 Query: 795 YLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTA 854 YLTRRLVDVAQ +++ E +C T GI +T + +G K L+ R++GRV ED+ Sbjct: 197 YLTRRLVDVAQHIIIRETNCKTDTGIFLTDMKDGNKTKVQLQKRLVGRVLGEDI------ 250 Query: 855 DILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEA 914 + + +N ++ + E + V VRS ++C T +C CYG LA G +++KGEA Sbjct: 251 ESIAKKNQDIYPLLAFKIVEKR-NKVCVRSPLTCKTKKPICQLCYGWSLAYGKLVSKGEA 309 Query: 915 IGVIAAQSIGEPGTQLTMRTFHIGGAAS 942 +GV+AAQSIGEPGTQLTMRTFH GG S Sbjct: 310 VGVLAAQSIGEPGTQLTMRTFHTGGVFS 337 Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 105/288 (36%), Positives = 144/288 (50%), Gaps = 63/288 (21%) Query: 1097 AQYFLPG-KAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAI 1155 AQ FL G K I + I + L + T+DI G+PR+ ++FEAR+PKE I Sbjct: 1127 AQPFLFGSKGIFLINHDDVIENKTPLITLFYRKIKTEDIIQGIPRIEEIFEARQPKEGDI 1186 Query: 1156 LAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPE 1215 ++E + +L F E+ + +S Sbjct: 1187 ISENLNM--------------------------------KLKFFFYWYSEKKN-LSFQES 1213 Query: 1216 APHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFL 1275 A I R++ + IVN +Q VY+ QGV I DKHIE+IVRQM K I+ G+ FL Sbjct: 1214 AKISIQRIQTI------IVNRIQKVYQSQGVDIADKHIEIIVRQMTGKVKIIVGGA--FL 1265 Query: 1276 EGEQVEYSRVKIANRELEANGKVGAT-------------------YSRDLLGITKASLAT 1316 GE + +V+ NR +E + + Y +LGITKA+L T Sbjct: 1266 RGELISLRKVERKNRNIEYTQNLNSVLKEYLKLQKIYRPSIKKVIYEPIILGITKAALET 1325 Query: 1317 E--SFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362 E SF+SAASFQETT++L++AA+ K D L GLKENVI+GRLIPAGTG Sbjct: 1326 ETESFLSAASFQETTKILSQAALQKKLDFLVGLKENVILGRLIPAGTG 1373 >UniRef50_A0T0Q9 DNA-directed RNA polymerase subunit beta'' n=2 Tax=Thalassiosira pseudonana RepID=RPOC2_THAPS Length = 1446 Score = 286 bits (733), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 147/395 (37%), Positives = 232/395 (58%), Gaps = 22/395 (5%) Query: 589 YSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPE 648 Y N + KK + ++L + + AD++ Y GF YA ++G S+ I+D+ +P Sbjct: 4 YIYQNTLINKKQLKELLAWSFSKYDSMQASLLADELKYLGFKYATQAGISISIEDLKVPA 63 Query: 649 KKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVIN 708 K+E++ +A ++ ++ G +T ER+ K+ID W+ A++ + ++ +T +N Sbjct: 64 TKNEMLEKANKDILNAEKICLKGKITDVERFQKIIDTWSIASESLKDNVVSYFKTYDPLN 123 Query: 709 RDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLN 768 S+Y+MA SGARG+ +Q+RQL GMRGLMA P G I+ PI NFREGL Sbjct: 124 ------------SVYIMAFSGARGNLSQVRQLVGMRGLMADPSGEIMRVPIKKNFREGLT 171 Query: 769 VLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEG 828 + Y +S +GARKG+ DTALKTANSGYLTRRL+D+AQD+V+ E DC T ++ + Sbjct: 172 ITDYLMSGYGARKGIVDTALKTANSGYLTRRLIDIAQDIVIREKDCLTSSSFLIDSQTKF 231 Query: 829 GDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSC 888 ++++GRV + V T ++ NT L +L + + +RS ++C Sbjct: 232 DT------EQLIGRVLLKSVYDSKTEKLIAKANTQLTLDLLNLFNQKQISKFYIRSPLTC 285 Query: 889 DTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAES 948 + +C CYG DL+ ++++ GEA+G++A QSIGEPGTQLTMRTFH GG + A + Sbjct: 286 NLYHSICQMCYGWDLSNQNLVDLGEAVGILAGQSIGEPGTQLTMRTFHTGGIFTSEARQQ 345 Query: 949 SIQVKNKGSIKLSNV-KSVV--NSSGKLVITSRNT 980 I KN G IK S + K+++ + G+ V+ ++N+ Sbjct: 346 IISPKN-GIIKFSKILKTIILRTNRGEDVLLTKNS 379 Score = 159 bits (402), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 132/446 (29%), Positives = 205/446 (45%), Gaps = 81/446 (18%) Query: 980 TELKLIDEFGRTKESY--KVPYGAVLAKGDGEQVAGGETVANWDPHTMPVI--------- 1028 T+ L++ G K+SY KV + + K +G+ + + + +I Sbjct: 1024 TKRSLVERLGPNKKSYGFKVKFSKMFIKKNGKFYSSPIPLF---LNNFSIIKEEQKRLNE 1080 Query: 1029 --TEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGN 1086 E++ F+ + + Q +Q L SS +V + +R + LK + N Sbjct: 1081 GKNEINNFI----IKNTQLKIKQCLPLLLKSSELVTNKIKRKTPFNNNLTGLKFLKYPFN 1136 Query: 1087 DVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFE 1146 I + YF V ++G I G+ + + E T DI GLPR+ +L E Sbjct: 1137 KS-IGIHSLTEDYFEQEVNNVYCKNGEFIEKGEVIGLLNFEKEITGDIVQGLPRIEELLE 1195 Query: 1147 ARRPKEPAILAEISGIVSFGKETKGKRRLVI--TPVDGSDPYEEMIPKWRQLNVFEGERV 1204 AR+ K+P + T K+ L+I T +D S ++++ G + Sbjct: 1196 ARK-KKPT---------NKHLATNQKKSLLIQKTSIDSSFEFQKL-----------GTTI 1234 Query: 1205 ERGDVISDGPEAPHDILRL--------------------------------RGVHAVTRY 1232 + D I+ PH++L++ R + Sbjct: 1235 KENDKIN-----PHNLLKIYFNYYGIKKQFFSNKEMFALSYRLTDNYEASYRTFKKIQLL 1289 Query: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANREL 1292 I+N VQ VY QGV I +KH+EVI++QM K I + G + L E V+ ++ N+ + Sbjct: 1290 ILNAVQSVYESQGVSIANKHLEVIIKQMTTKVLITHEGHTPLLPREVVDLYHIQYINKII 1349 Query: 1293 EANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVI 1352 EA+ K A Y LLGITKA+L SFISAASFQETTRVLT+AA+ G+ D LRGLKEN+I Sbjct: 1350 EAHNKRPAYYVPLLLGITKAALNNPSFISAASFQETTRVLTKAAIEGRVDWLRGLKENII 1409 Query: 1353 VGRLIPAGTGYAYHQDRMRRRAAGEA 1378 +G LIP+GTGY + + + A + Sbjct: 1410 IGHLIPSGTGYQSYSNCFNQLAQSKT 1435 >UniRef50_D0FY22 DNA-directed RNA polymerase n=1 Tax=Dunaliella salina RepID=D0FY22_DUNSA Length = 2681 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 157/422 (37%), Positives = 223/422 (52%), Gaps = 78/422 (18%) Query: 587 LPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVI 646 L + NQ K + + + G TV +Q+ GF YA+++G S+GIDD+ I Sbjct: 78 LKHCFFNQCFDKGRLKNFVLWFLKNYGQNKTVKLVEQLKNIGFEYASKAGISLGIDDLKI 137 Query: 647 PEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETV 706 P +K ++I +AE Q+ G +T ER+ ++ID W ++ + + ++D + + Sbjct: 138 PYRKSDLIFDAEKITTNTIHQYTRGEITGVERFQRLIDTWHRTSESLKQEVIDYFEATDI 197 Query: 707 INRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREG 766 +N +YMMA SGARG+ +Q+RQL GMRGLMA P G II+ PI +NFREG Sbjct: 198 LN------------PVYMMAFSGARGNISQVRQLVGMRGLMADPQGQIIDFPIRSNFREG 245 Query: 767 LNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVI 826 L + +Y IS++GARKG+ DTAL+TAN+GYLTRRLVDVAQ ++++ DCGTH GI + + Sbjct: 246 LTLTEYLISSYGARKGIVDTALRTANAGYLTRRLVDVAQHVIISHFDCGTHRGIFLKDMK 305 Query: 827 EGGDVKEPLRDRVLGRVTA----------------------------------------- 845 EG L RV+GR+ A Sbjct: 306 EGNKTIHSLIQRVVGRILARDLIDTSLISKDQNQIPKDQIKENVPSKFPGRLGQGPSSSI 365 Query: 846 EDVLKPGTADILVPRNTLL--HEQ---------WCDLLEENS-------------VDAVK 881 D LK + D P+N HEQ + L + N D + Sbjct: 366 NDALKNSSFDGFAPQNLTGNGHEQKEKNSDLRQYPILAKRNQEITMDLALSIVQKFDKIF 425 Query: 882 VRSVVSCDTDFGVCAHCYGRDLARGH-IINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGA 940 VRS ++C+T+ +C CYG L +G +++ GEA+GV+AAQSIGEPGTQLTMRTFH GG Sbjct: 426 VRSPLTCETNQLICQLCYGWSLGQGSTLVSIGEAVGVVAAQSIGEPGTQLTMRTFHTGGV 485 Query: 941 AS 942 S Sbjct: 486 FS 487 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 80/192 (41%), Positives = 111/192 (57%), Gaps = 19/192 (9%) Query: 1190 IPKWRQLNVFEGERVERGDVISDG-------------PEAPHDILRLRGVHAVTRYIVNE 1236 IPK Q FE +RG D + P D+ + + + + +V+ Sbjct: 2495 IPKVEQF--FEARTTKRGRFFRDSLPYLLKSLFKRYSSKLPLDLAVRQSFYKIQQILVDG 2552 Query: 1237 VQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANG 1296 V VY+ QGV I+DKH+EVIV+QM K I++ + F GE ++ V+ N L Sbjct: 2553 VHRVYKAQGVTISDKHLEVIVKQMTSKVRIIDGAQTGFFAGEVLDLFFVEKINTFLMK-- 2610 Query: 1297 KVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRL 1356 TY +LGITKASL +SF+SAASFQ+TTRVL++AA+ K+D L+GLKENVI+G L Sbjct: 2611 --KITYEPLVLGITKASLEVDSFLSAASFQQTTRVLSKAALFRKKDFLKGLKENVILGNL 2668 Query: 1357 IPAGTGYAYHQD 1368 IPAGTG+ + D Sbjct: 2669 IPAGTGFLVYID 2680 >UniRef50_P49468 DNA-directed RNA polymerase subunit beta'' n=1 Tax=Odontella sinensis RepID=RPOC2_ODOSI Length = 1481 Score = 279 bits (713), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 137/351 (39%), Positives = 212/351 (60%), Gaps = 12/351 (3%) Query: 589 YSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPE 648 Y+ N + KK + ++L+ + AD++ Y GF YA+++G S+ I+D+ +P Sbjct: 4 YTYQNTLISKKQLKQLLSWSFTTYDSMQACSLADELKYLGFKYASKAGISISIEDLKVPY 63 Query: 649 KKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVIN 708 K+ ++ A E+ ++ + G +T ER+ K+ID W + S+++ D L + Sbjct: 64 NKNLLLKIAHQEINSSEKIYLKGKLTDVERFQKLIDTW----NLTSESLKDELVSYF--- 116 Query: 709 RDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLN 768 ++ NS+Y+MA SGARG+ +Q+RQL GMRGLM+ P G +++ PI NFREGL Sbjct: 117 -----KRYDPLNSVYIMAFSGARGNLSQVRQLVGMRGLMSDPSGELLKLPIKKNFREGLT 171 Query: 769 VLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEG 828 + Y +S +GARKG+ DTALKTANSGYLTRRL+DVAQD+++ E DC T ++ Sbjct: 172 ITDYLMSGYGARKGIIDTALKTANSGYLTRRLIDVAQDIIIREKDCLTKHSCLIINFESN 231 Query: 829 GDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSC 888 +K+ + +++LGR+ + + T +++ NT + L++ + VRS ++C Sbjct: 232 LRIKKSVYEKILGRLLNKSIYDEKTKELIAEVNTQVTPNLIRTLKQKQIKHFYVRSPLTC 291 Query: 889 DTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGG 939 +C CYG DLA ++I+ GE IG+IA QSIGEPGTQLTMRTFH GG Sbjct: 292 SLYRSICQKCYGWDLANENLIDIGERIGIIAGQSIGEPGTQLTMRTFHTGG 342 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 103/282 (36%), Positives = 147/282 (52%), Gaps = 24/282 (8%) Query: 1107 VQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKE----------PAIL 1156 V ++G + +G T+ + E T DI GLPRV L EAR+ K+ +L Sbjct: 1201 VFCKNGEFVKNGQTIGLLNFEKEITGDIVQGLPRVEQLLEARKKKQITKNLPINKKKGLL 1260 Query: 1157 AEISGIVSFGKE----TKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDV--I 1210 + + I S+ + T K I P + Y + + F E D + Sbjct: 1261 TQTTSIDSYFEFKKLGTSIKENEKINPHNLLKVY---FNYYGLIKTFFCENSYTKDSYRL 1317 Query: 1211 SDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAG 1270 + EA + R V I+N VQ VY+ QGV I DKH+EVI++QM K I + G Sbjct: 1318 FNNYEASY-----RSFKKVQSLILNSVQSVYKSQGVSIADKHLEVIIKQMTTKVLITHQG 1372 Query: 1271 SSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTR 1330 ++ L E ++ ++ N+ + K A Y LLGITKA+L SFISAASFQETTR Sbjct: 1373 NTSLLPREVIDLYHIEYINKIARIHKKHPALYVPLLLGITKAALNNPSFISAASFQETTR 1432 Query: 1331 VLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRR 1372 VLT+AA+ G+ D LRGLKEN+I+G L+PAGTG + + ++ Sbjct: 1433 VLTKAAIEGRVDWLRGLKENIIIGHLMPAGTGSPVYTNCFKK 1474 >UniRef50_Q3ZJ90 DNA-directed RNA polymerase subunit beta'' n=3 Tax=Viridiplantae RepID=RPOC2_PSEAK Length = 3462 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 140/352 (39%), Positives = 211/352 (59%), Gaps = 14/352 (3%) Query: 591 IVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKK 650 N+ K + +++ G K TV + + G+AYA ++G S+GIDD+ IP K Sbjct: 52 FYNRPFEKGRLKALVSWSISYFGEKKTVDLVENLKSIGYAYATKAGISLGIDDLKIPPSK 111 Query: 651 HEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRD 710 + I++AE + + + G +T+ E ++KVI+ W ++ + + ++ N + Sbjct: 112 KDYITKAEQILEFTNQDVKKGYLTSIEYFSKVIETWNKTSESLKEEVISNFK-------- 163 Query: 711 GQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVL 770 K N +++MA SGARG+ +Q+RQL MRGLM+ P G II PI +NFREGL + Sbjct: 164 ----KTDELNPVFIMAFSGARGNISQVRQLTSMRGLMSDPQGRIINFPIQSNFREGLTLT 219 Query: 771 QYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGD 830 +Y IS +GARKG+ DTAL+TA SGYLTRRLVDVA ++V +CGT +G+ ++ + +G Sbjct: 220 EYLISCYGARKGVVDTALRTATSGYLTRRLVDVAHHVIVRGFNCGTKKGLYLSDLKKGDK 279 Query: 831 VKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDT 890 + L++R++GR AED+ ++ +N + L+ +N ++ VRS ++C Sbjct: 280 ILLSLKNRIIGRRLAEDIYN-SKKQLIATKNQEISSNLSSLITKNKT-SIFVRSPLTCQD 337 Query: 891 DFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAAS 942 VC CYG LA ++ GEAIG+IAAQSIGEPGTQLTMRTFH GG S Sbjct: 338 KNYVCQLCYGWSLANHRLVPSGEAIGIIAAQSIGEPGTQLTMRTFHTGGVFS 389 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 93/296 (31%), Positives = 144/296 (48%), Gaps = 51/296 (17%) Query: 1071 GKDLRPALKIVDAQGNDVLIPGTDMPAQY----FLPGKAIVQLEDGVQISSGDTLARIPQ 1126 GK++ P + + + G +++ + +Y L I L G + + L + Sbjct: 3194 GKEISPGIGL-NQSGQILILQSNKLVLRYAKPFLLASGGICDLVQGDFVKNQSPLLNLKY 3252 Query: 1127 ESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPY 1186 +S T+DI G+P++ LFEAR + + G K + ++ Y Sbjct: 3253 KSLKTEDIVQGIPKIEQLFEARENFQDEL----------GINNLLKNKFLV--------Y 3294 Query: 1187 EEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGV 1246 + + P + +R + + YI++ +Q VY+ QGV Sbjct: 3295 KTLY-------------------------HPKEAVR-KSFEFIQHYIIDGIQYVYQSQGV 3328 Query: 1247 KINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDL 1306 I+DKHIE+IV+QM K I+ +S L G+ V+ ++ N ++ K A Y + Sbjct: 3329 NISDKHIEIIVKQMTSKVRILEPRNSGLLRGDVVDLDWIERINLDILTGKK--AQYEPIV 3386 Query: 1307 LGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362 LGITKASL FISAASFQET +VLT+A + +RD LRGLKENVI+G LI +GTG Sbjct: 3387 LGITKASLDRRGFISAASFQETIKVLTKATILQRRDYLRGLKENVILGHLINSGTG 3442 >UniRef50_C0JWJ8 DNA-directed RNA polymerase n=1 Tax=Monomastix sp. OKE-1 RepID=C0JWJ8_MONSK Length = 1240 Score = 275 bits (704), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 156/373 (41%), Positives = 225/373 (60%), Gaps = 25/373 (6%) Query: 590 SIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEK 649 + NQ L KK + ++++ G T + D Y GF YA ++G S+G DD+ IP Sbjct: 2 NFYNQVLDKKGLKRIVSWFIENYGPTRTSLLLDDFKYIGFHYAGKAGLSLGFDDLRIPAA 61 Query: 650 KHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINR 709 K +++ A+ +V E ++ + G +TA ERY K+IDIW ++++ ++ N Q Sbjct: 62 KKLLLTGAQKQVQECEKTYLMGRITAFERYQKLIDIWTTTSEKLKDEVIQNFQ------- 114 Query: 710 DGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNV 769 + + + +YMMA SGARG+ +Q+RQL GMRGLM+ G II+ PI +NFREGL+V Sbjct: 115 --KIQGGPLASPLYMMAFSGARGNISQVRQLVGMRGLMSDSGGGIIDFPIRSNFREGLSV 172 Query: 770 LQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGG 829 +Y IS +GARKGL DTAL+TA+SGYLTRRLVDVA +++ E DCGT E I+M Sbjct: 173 TEYVISCYGARKGLIDTALRTADSGYLTRRLVDVAHGIIIREIDCGTSESILM------- 225 Query: 830 DVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLE--ENSVDAVKVRSVVS 887 K + ++GRV AE + K T I +N + L+ + S +++VRS ++ Sbjct: 226 --KISDKKNIIGRVLAESI-KERTPTIW--KNQEISPNLALELKTLKGSKASIQVRSPLT 280 Query: 888 CDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAE 947 C + VC CYG +LA+G ++ G+A+G++AAQSIGEPGTQLTMRTFH GG S E Sbjct: 281 CLSQ-SVCQLCYGWNLAQGRLVALGDAVGILAAQSIGEPGTQLTMRTFHTGGIFS-TEVE 338 Query: 948 SSIQVKNKGSIKL 960 I G+I L Sbjct: 339 DKIYAPAGGTIWL 351 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 90/256 (35%), Positives = 139/256 (54%), Gaps = 21/256 (8%) Query: 1127 ESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPY 1186 +S + DI GLP++ LFEAR E ++ + + +++ E K + + Sbjct: 987 DSASSGDIVQGLPKIEQLFEARSANESSV--QNTKLLANKTEKKSDINKLSKQKEKFKNL 1044 Query: 1187 EEMIPKWRQLNVFEGERVERGDVISDGP---------EAPHDILRLRGVHAVTRYIVNEV 1237 E+ P+ Q +VF + S+GP E +++ + + + ++ E+ Sbjct: 1045 EQKKPQ-EQTSVFNSNVKGLEEKTSNGPHNSIEGVTGEELRTLVKKTELRELQKRLIQEI 1103 Query: 1238 QDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVE-YSRVKIANRELEANG 1296 Q VY QGV+I DKH+E+IVRQM + I+ G++ F + +E + + ++E++ + Sbjct: 1104 QSVYNSQGVEIADKHLEIIVRQMTSRVRILEKGNTPFYPDDIIEAFGSNTLLSKEIQKSP 1163 Query: 1297 KV------GATYSRDLLGITKASL--ATESFISAASFQETTRVLTEAAVAGKRDELRGLK 1348 V G +Y LLGITK +L TES+ISAASFQET RVL AA+ + D GLK Sbjct: 1164 NVLSDENSGFSYEWILLGITKVALLSTTESYISAASFQETKRVLMTAALQSRVDFFEGLK 1223 Query: 1349 ENVIVGRLIPAGTGYA 1364 ENVIVGR+IPAGTGY Sbjct: 1224 ENVIVGRMIPAGTGYT 1239 >UniRef50_C6KJ15 DNA-directed RNA polymerase n=2 Tax=Pelagophyceae RepID=C6KJ15_9STRA Length = 1158 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 166/463 (35%), Positives = 255/463 (55%), Gaps = 34/463 (7%) Query: 590 SIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEK 649 + N+ + KK + +++ G+ + + +GF +A ++G S+ ++D+ +P Sbjct: 5 TFYNKTINKKELKTIIHATVESYGITKATNLVENLKKSGFYFATQAGISISVEDLKVPPS 64 Query: 650 KHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINR 709 K + + E+ + G + ER+ KVID+W +D + +++ L+T Sbjct: 65 KDPLFFQNTNEIKLAYFYEKRGNINEIERFQKVIDMWHNTSDLLKNQLVEFLKTVD---- 120 Query: 710 DGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNV 769 N +YMMA SGARG+ +Q+RQL GMRGLMA P+G II+ PI ANFREGL + Sbjct: 121 --------PLNPVYMMAFSGARGNLSQVRQLVGMRGLMADPNGQIIDLPIKANFREGLTI 172 Query: 770 LQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGG 829 Y IS++GARKG+ DTALKTA+SGYLTRRLVDVAQ +++ E DC T GI + + G Sbjct: 173 TDYVISSYGARKGIVDTALKTADSGYLTRRLVDVAQHVIIREVDCKTKNGIRLK--YKKG 230 Query: 830 DVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCD 889 K ++++GRV A+ + T IL+ T L + +L + N + VRS + C+ Sbjct: 231 KTKA---EKLIGRVIAKSIKSTKTNKILIEAGTTLTPK--ELHKINFDTDIVVRSPLICE 285 Query: 890 TDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESS 949 + +C CYG +LA+ ++ +AIGVIAAQSIGEPGTQLTMRTFH GG + ESS Sbjct: 286 SSHSICQKCYGWNLAQNKLVELADAIGVIAAQSIGEPGTQLTMRTFHTGGVFT---GESS 342 Query: 950 IQVKNKGSIKLSNVKSVVNS-----SGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLA 1004 Q+++K K+ KS+ + G++++ NT I T KV +L Sbjct: 343 NQIRSKSDGKILFDKSLKTTIARTIYGEIILKVENTSQIFILTDSDTLLVIKVTPEMLLF 402 Query: 1005 KGDGEQVAGGETVANWDPHTMP-------VITEVSGFVRFTDM 1040 + ++ GE +A +T VI+ SG V+F ++ Sbjct: 403 VRNQSKILNGELIAEIPNNTKQTTKEIKNVISSASGEVQFQNL 445 Score = 160 bits (404), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 107/282 (37%), Positives = 153/282 (54%), Gaps = 20/282 (7%) Query: 1099 YFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAE 1158 +F+ + ++ G I ++L ++ + DI GLPRV LFEAR K IL E Sbjct: 865 FFISIGTRIFVQHGSLIKKEESLCQLLYNRVISDDIISGLPRVEKLFEARVDKNKGILIE 924 Query: 1159 ISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPH 1218 GI+ E +GK + I Y + K Q+ + +GE V G I+ PH Sbjct: 925 NPGILKSKNEKEGK--ISILEKQNLKTYN-LNEKDVQILLKKGEIVFVGQPINVKMVNPH 981 Query: 1219 DILRLRGVHAVTRY----------------IVNEVQDVYRLQGVKINDKHIEVIVRQMLR 1262 +L + + + Y ++N VQ+VY+ QGV I DKHIE+I+RQ+ Sbjct: 982 KVLAIYFKYYCSFYTAQRATLLSVTNIQILLLNLVQEVYQSQGVDIADKHIEIIIRQITS 1041 Query: 1263 KATIVNAG-SSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFIS 1321 K ++ + F+ E ++ ++ N+ L+ K Y LLGITK SL TESF+S Sbjct: 1042 KVKVLRFNIDTFFIPTEYMDVDQINYINKSLKLVNKPLIEYQPILLGITKVSLMTESFVS 1101 Query: 1322 AASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGY 1363 AASFQETTR+L +AAV G+ + LRGLKENVI+GRLIPAGTG+ Sbjct: 1102 AASFQETTRILAQAAVEGRIEWLRGLKENVILGRLIPAGTGF 1143 >UniRef50_Q06SF2 DNA-directed RNA polymerase subunit beta'' n=2 Tax=Stigeoclonium helveticum RepID=RPOC2_STIHE Length = 2430 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 152/420 (36%), Positives = 226/420 (53%), Gaps = 64/420 (15%) Query: 566 KTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIM 625 KTSL D + K P N + K ++ + C+ G + T+ +++ Sbjct: 105 KTSLTDNKIVS-----FATKDFPQVFWNLSFNKGSLKNFVFWCFVNYGQRETIKILEKLQ 159 Query: 626 YTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDI 685 GF YA ++G S+ IDD+ IP K ++++A+ + ++ +T ER+ ++I+ Sbjct: 160 IIGFGYATKAGISLSIDDLKIPPTKAILLADADKSIEAGFLSYKKSQLTGLERFQRIIET 219 Query: 686 WAAANDRVSKAMMDNL-QTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMR 744 W ++ + M+ N QT+++ N +YMMA SGARG+ +Q+RQL MR Sbjct: 220 WHKTSESLKDEMITNFRQTDSL-------------NPVYMMAFSGARGNVSQVRQLVAMR 266 Query: 745 GLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVA 804 GLM+ P G I++ PI +NFREGL + +Y IS +GARKG+ DTAL+TAN+GYLTRRLVDVA Sbjct: 267 GLMSDPQGKILDFPIRSNFREGLTLTEYVISCYGARKGVVDTALRTANAGYLTRRLVDVA 326 Query: 805 QDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLK-------------- 850 Q ++V DCGT +G +T + + PLR R+LGRV A ++ Sbjct: 327 QHVIVLNFDCGTKKGFYLTEMKKFNKTLYPLRQRLLGRVLAANLYNVNPFHLKKRIEIGE 386 Query: 851 -----------PGTADIL--VPRNTLLHEQWC----------------DLLEENS--VDA 879 G + P+ +L + C L E+ S + Sbjct: 387 KEKNLSSLPSSKGKMEFFPSFPQASLAGKASCFPEPQIVAFRNQEISEPLAEKISKITNK 446 Query: 880 VKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGG 939 V +RS ++CDT VC CYG L+ G++++ GEA+G+IAAQSIGEPGTQLTMRTFH GG Sbjct: 447 VFIRSPLTCDTPRLVCQLCYGWSLSEGYLVSIGEAVGIIAAQSIGEPGTQLTMRTFHTGG 506 Score = 119 bits (298), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 65/130 (50%), Positives = 82/130 (63%), Gaps = 2/130 (1%) Query: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANREL 1292 +VN VQ +YR QGV I+DKH+EVIV+QM K I + G S F GE V+ V+ N Sbjct: 2299 LVNSVQRIYRSQGVSISDKHLEVIVKQMTSKVQITSRGDSSFFRGEHVDLYIVETWNALH 2358 Query: 1293 EANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVI 1352 K+ Y LLGI+++SL SF+SAASFQ T +VL+ +A D L GLKENVI Sbjct: 2359 PQLKKI--CYKPILLGISRSSLEVNSFLSAASFQHTKKVLSRSAFKTNIDFLNGLKENVI 2416 Query: 1353 VGRLIPAGTG 1362 +G LI AGTG Sbjct: 2417 IGNLISAGTG 2426 >UniRef50_Q1ACN4 DNA-directed RNA polymerase subunit beta'' n=1 Tax=Chara vulgaris RepID=RPOC2_CHAVU Length = 1412 Score = 270 bits (691), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 155/441 (35%), Positives = 252/441 (57%), Gaps = 29/441 (6%) Query: 585 KGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDM 644 K +P+ NQ + K I +++ G T D++ GF Y ++G S+GIDD+ Sbjct: 5 KEIPF--YNQIVDKGTIKQLIGRLVAHFGSTYTSHILDKLKELGFEYGTKTGISLGIDDL 62 Query: 645 VIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTE 704 +I K +I +AE + + SG + A E+ ++I+ W ++ + + M N + Sbjct: 63 LITPSKKWLIQDAEQQAQASDSHYNSGNLHAVEKLRQLIETWHTTSEYLKQEMNPNFRIT 122 Query: 705 TVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFR 764 FN ++MMA SGARG+ +Q+ QL GMRGLM+ P G II+ PI +NFR Sbjct: 123 D------------PFNPVHMMAFSGARGTTSQVHQLVGMRGLMSDPHGQIIDLPIQSNFR 170 Query: 765 EGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTP 824 EGL++ +Y IS +GARKG+ DTA++T++SGYLTRRLVDVAQ +VV + DC TH+ I + P Sbjct: 171 EGLSLAEYIISCYGARKGVVDTAIRTSDSGYLTRRLVDVAQHIVVRKTDCKTHKCISIQP 230 Query: 825 VIEGG--DVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKV 882 +E ++ ++ +++GR+ A+ VLK + RN + L ++ V Sbjct: 231 FLEEWKMNIHLYVQQKLIGRILADYVLKDNRC--IASRNQDISFDLAIRLLSFKFQSIWV 288 Query: 883 RSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAAS 942 RS ++C++ +C CYG + ++I GEA+G+IAAQSIGEPGTQLT+RTFH GG + Sbjct: 289 RSPLTCESTRWICQMCYGWSIGYRNLIEVGEAVGIIAAQSIGEPGTQLTLRTFHTGGVFT 348 Query: 943 RAAAESSIQVKNKGSIKLSN--VKSVVNSSGK-LVITSRNTELKLIDEFGRTKESYK--V 997 A+ I+ G I+L+N ++S+ N G+ + N +K+ + K++Y+ + Sbjct: 349 GDIAQ-QIRSPLNGIIQLNNSKIRSIRNRYGQPAFVCLDNIHIKV-----KGKDTYQSII 402 Query: 998 PYGAVLAKGDGEQVAGGETVA 1018 P ++L + ++V + +A Sbjct: 403 PTESLLFVKNNQKVQAKQVIA 423 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 79/131 (60%), Positives = 93/131 (70%), Gaps = 5/131 (3%) Query: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLEGEQVEYSRVKIANRE 1291 +V E+Q VYR QGV I DKHIE+IVRQM K I+ G +D FL GE VE R + NR Sbjct: 1217 LVFEIQQVYRSQGVYICDKHIEIIVRQMTSKIIILGDGMTDGFLPGELVEIPRARKTNRA 1276 Query: 1292 LEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 + K Y L+GIT+ASL T SFIS ASFQETTRVLT+AA+ G+ D L+GLKENV Sbjct: 1277 M----KSIMFYKPILVGITRASLNTRSFISEASFQETTRVLTKAAIKGRTDWLKGLKENV 1332 Query: 1352 IVGRLIPAGTG 1362 I+GRLIPAGTG Sbjct: 1333 ILGRLIPAGTG 1343 >UniRef50_Q0P3M4 DNA-directed RNA polymerase subunit beta'' n=1 Tax=Ostreococcus tauri RepID=RPOC2_OSTTA Length = 1011 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 145/357 (40%), Positives = 211/357 (59%), Gaps = 21/357 (5%) Query: 591 IVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKK 650 N+ + K + +++ G + T D++ GF YA +G S+GIDD+ IP K Sbjct: 5 FCNRTVDKGEMKRLIKWVLLNYGTEKTTRLIDKLKTMGFHYATHAGISLGIDDLSIPPIK 64 Query: 651 HEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRD 710 + AE ++ E + + G +T+ +R K +DIW ND + ++ ++ + Sbjct: 65 SAFLLNAENDIYENDLRLKRGQITSVQRLEKALDIWNTTNDTLKTEVVKYFRSTDI---- 120 Query: 711 GQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVL 770 FN +YMMA SGARG+ +Q+RQL GMRGLMA P G I++ PI NFREGL V Sbjct: 121 --------FNPVYMMAFSGARGNISQVRQLVGMRGLMADPQGQILDFPIRRNFREGLTVT 172 Query: 771 QYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGD 830 +Y IS +GARKGL DTAL+TA+SGYLTRRLVDVAQ +++ + DC T +G+ + P + Sbjct: 173 EYMISCYGARKGLVDTALRTASSGYLTRRLVDVAQSVIIQQVDCQTTQGLRIVPEL---- 228 Query: 831 VKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDT 890 E + +++GRV EDV+ T ++ +N + L+ A+ +RS ++C Sbjct: 229 --EKIESQLIGRVLFEDVVDLETGRMVGYKNQDISPALA--LKLIKQPALTIRSPLTCRF 284 Query: 891 DFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAE 947 VC CYG +LA+ ++ GEA+GV+AAQSIGEPGTQLTMRTFH GG + A E Sbjct: 285 H-AVCQLCYGWNLAQQKLVQLGEAVGVLAAQSIGEPGTQLTMRTFHTGGVFAGEATE 340 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 99/267 (37%), Positives = 136/267 (50%), Gaps = 55/267 (20%) Query: 1100 FLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAIL--- 1156 +PG +V ++ G + L + DI GLP+V +L EAR P+ + Sbjct: 794 LVPGSNVV-VKHGSLVQENSVLGTLMTSQSTAGDIVQGLPKVDELLEAREPQHKVLTSMH 852 Query: 1157 AEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEA 1216 A++S + S + G R +G E Sbjct: 853 AKLSTLFSQYGKIYGLR--------------------------------------EGCEL 874 Query: 1217 PHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLE 1276 +R +++V EVQDVY+ QGV I DKH+E+IVRQM +V+AG + L Sbjct: 875 SFQKIR--------QFLVQEVQDVYQSQGVYIGDKHVEIIVRQMTTHVVVVDAGKTGLLP 926 Query: 1277 GEQVEYSRVKIANRELEANGKV-GATYSRDLLGITKASLATESFISAASFQETTRVLTEA 1335 G+ V+ R++ +LE G G Y LLGIT+A+L ESFISAASFQET RVL++A Sbjct: 927 GDIVDIRRIE----QLEHTGFFAGVKYRPMLLGITRAALMAESFISAASFQETKRVLSKA 982 Query: 1336 AVAGKRDELRGLKENVIVGRLIPAGTG 1362 A+ G+ D L GLKENVI+GRLIPAGTG Sbjct: 983 ALEGQIDWLTGLKENVILGRLIPAGTG 1009 >UniRef50_P12465 DNA-directed RNA polymerase subunit beta'' n=2 Tax=Chlorella vulgaris RepID=RPOC2_CHLVU Length = 1562 Score = 270 bits (689), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 144/360 (40%), Positives = 212/360 (58%), Gaps = 26/360 (7%) Query: 584 PKGLPYS---IVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVG 640 PK L + N + K + ++ G K TV + + GF A R+G S+G Sbjct: 54 PKALKFRTPIFFNVSFDKNTLKTVIAWFLDQYGGKATVDLVETLKQVGFHQATRAGVSLG 113 Query: 641 IDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDN 700 ++D+ IP +K +S A E + ++G +T+ E+ ++ID W ++ + +A + N Sbjct: 114 LEDLQIPPQKASFLSAASVSGVEAAQALETGNLTSVEKSQRLIDTWNKTSESLRQAAVHN 173 Query: 701 LQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIT 760 + +N +YMMA SGARG+ +Q+RQL MRGLMA P G+I+E PI Sbjct: 174 FRATNPVN------------PVYMMAFSGARGNISQVRQLVAMRGLMADPQGAILEFPIQ 221 Query: 761 ANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGI 820 +NFREGL + +Y +S +GARKGL DTAL+TA++GYLTRRLVD Q +V+ +C T +GI Sbjct: 222 SNFREGLTITEYLLSCYGARKGLVDTALRTASAGYLTRRLVDAVQHVVIYTKNCKTEKGI 281 Query: 821 MMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAV 880 +G +++ L LGRV +DV+ T ++P++TL+ L + + Sbjct: 282 ----TFKGLHIEQNL----LGRVLLKDVILNTTT--VIPKDTLVSSSLAKKLAAIN-QKI 330 Query: 881 KVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGA 940 VRS ++C T+ VC CYG DLA+G ++ GEA+G+IAAQSIGEPGTQLTMRTFH GG Sbjct: 331 FVRSPLTCQTEKTVCQLCYGLDLAQGKLVCFGEAVGIIAAQSIGEPGTQLTMRTFHTGGV 390 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 79/306 (25%), Positives = 132/306 (43%), Gaps = 56/306 (18%) Query: 1060 VVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPG----KAIVQLEDGVQI 1115 V++ +R G+++ P G + I T + + LP + +V + + Sbjct: 1297 VLVSCGQRIRWGQEIFPGFA-SSLSGRILDITATQITVRKALPFLGSRRGLVHVAQNDLL 1355 Query: 1116 SSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAIL-----AEISGIVSFGKETK 1170 L + + T+DI G+P++ LFEAR K+ I+ ++ S K K Sbjct: 1356 QKNHILMTLRSKQLQTEDIVQGIPKIEQLFEARETKDGEIIRYNMHFRLNSFFSLAKRVK 1415 Query: 1171 GKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVT 1230 P+ +E D+ + + Sbjct: 1416 --------------PF-----------------LEAFDL---------------SLLYIQ 1429 Query: 1231 RYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANR 1290 R++V + + Y QGV I +KH+EV+VRQM + I + L GE ++ ++ NR Sbjct: 1430 RFLVKTLLEAYSNQGVNIAEKHVEVVVRQMTARVRITFGKDTSLLPGEFIQLRLLEEINR 1489 Query: 1291 ELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKEN 1350 L K A Y +LG+TK+ L +ESF+ AASFQ+ ++VL +A+A K D LRGL + Sbjct: 1490 SLVEAKKEPALYEPVILGLTKSVLQSESFLLAASFQQVSKVLVRSALATKTDFLRGLMKP 1549 Query: 1351 VIVGRL 1356 + V L Sbjct: 1550 LYVASL 1555 >UniRef50_C1KRB0 DNA-directed RNA polymerase n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1KRB0_9CHLO Length = 1227 Score = 268 bits (686), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 149/359 (41%), Positives = 209/359 (58%), Gaps = 25/359 (6%) Query: 591 IVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKK 650 N+ + K + +++ G + F D + GF A +G S+GIDD+ IP K Sbjct: 5 FCNRTVDKSEMKRLIKWVLLNYGTQKATRFVDHLKTLGFHSATTAGISLGIDDLRIPPVK 64 Query: 651 HEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRD 710 + AE ++ + ++ G +TA ER K +DIW ND + ++ + + ET I Sbjct: 65 PVFLKNAEKDILDNDLRYSRGQITAVERLEKALDIWNTTNDTLKNEVIAHFR-ETDI--- 120 Query: 711 GQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVL 770 FN +YMMA SGARG+ +Q+RQL GMRGLMA G +++ PI NFREGL V Sbjct: 121 --------FNPVYMMAFSGARGNISQVRQLVGMRGLMADQQGQVLDFPIRRNFREGLTVT 172 Query: 771 QYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGD 830 +Y IS +GARKGL DTAL+TANSGYLTRRLVDVAQ +++ + DCGT +G+ + P Sbjct: 173 EYMISCYGARKGLVDTALRTANSGYLTRRLVDVAQSVIIQQFDCGTQDGLEVVP------ 226 Query: 831 VKEPLRD--RVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSC 888 P D ++GRV + V++ T + +NT + L + V VRS ++C Sbjct: 227 --SPKHDCANIVGRVLLQPVIQAHTGKYIARKNTEISPALATRLV--NYPKVVVRSPLTC 282 Query: 889 DTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAE 947 + VC CYG DL++ ++ GEA+GV+AAQSIGEPGTQLTMRTFH GG + A E Sbjct: 283 RLN-SVCQLCYGWDLSKHRLVQLGEAVGVLAAQSIGEPGTQLTMRTFHTGGVFAGEATE 340 Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 104/267 (38%), Positives = 135/267 (50%), Gaps = 55/267 (20%) Query: 1099 YFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKE---PAI 1155 Y L + V + DG ++ A + DI GLP+V +L EAR P E ++ Sbjct: 1010 YTLSHGSPVFVRDGAFVTPKKPFAALVSRESTAGDIVQGLPKVDELLEAREPVEKVLSSM 1069 Query: 1156 LAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPE 1215 A+++ + + + G R EG R Sbjct: 1070 HAQLAKLFLYYSKAYGLR--------------------------EGCR------------ 1091 Query: 1216 APHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFL 1275 R + + R +V+EVQ+VY QGV I+DKHIE+IVRQM IV+ G S L Sbjct: 1092 --------RSLQEIRRMLVHEVQEVYGSQGVFISDKHIEIIVRQMTTYVLIVDPGESTLL 1143 Query: 1276 EGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEA 1335 G+ ++ RV+ LE V Y LLGIT+ASLA ESFI+AASFQET RVLT A Sbjct: 1144 PGDIIDLRRVE----NLECKSPV--QYRPILLGITRASLAAESFIAAASFQETKRVLTRA 1197 Query: 1336 AVAGKRDELRGLKENVIVGRLIPAGTG 1362 AV G+ D L GLKENVI+GRLIPAGTG Sbjct: 1198 AVEGRIDWLTGLKENVILGRLIPAGTG 1224 >UniRef50_Q06J19 DNA-directed RNA polymerase subunit beta'' n=1 Tax=Bigelowiella natans RepID=RPOC2_BIGNA Length = 1595 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 135/316 (42%), Positives = 199/316 (62%), Gaps = 17/316 (5%) Query: 628 GFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWA 687 GF YA +G S+GIDD+ K+++I + + +I ++ E K+I+ W Sbjct: 42 GFQYATTAGISLGIDDLKTISTKYDLIEKTNDNIKDITNHLNLAVLNEVEHSQKLINSW- 100 Query: 688 AANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM 747 ++S+ + N IN+ + ++ N IYMMA SGARG+ +Q+RQL GMRGLM Sbjct: 101 ---QKISEILKIN------INKKFKTVNKL--NPIYMMAFSGARGNISQVRQLIGMRGLM 149 Query: 748 AKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDL 807 A P+G II PI +NFREGL V +Y IS +GARKG+ DTAL+TA +GYLTRRLVD AQ + Sbjct: 150 ADPNGQIIHLPIKSNFREGLTVTEYLISCYGARKGVVDTALRTATAGYLTRRLVDTAQHV 209 Query: 808 VVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQ 867 ++++ DCGT +GI ++ + +G D+ L+D++ GRV +D+ ++ +N + + Sbjct: 210 IISQLDCGTKQGIFLSNLYQGTDILLALKDQLYGRVLGKDI---KINSLMYLKNQQIDDS 266 Query: 868 WCDLLEENSVDAVKVRSVVSCD-TDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEP 926 LL N + V +RS ++C ++ +C CYG +L+ +I+ GE +GVIAAQSIGEP Sbjct: 267 LSILL-ANHLKRVFIRSPLTCKASNSTLCQLCYGWNLSHSKLISLGEIVGVIAAQSIGEP 325 Query: 927 GTQLTMRTFHIGGAAS 942 GTQLTMRTFH GG S Sbjct: 326 GTQLTMRTFHTGGVFS 341 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 98/304 (32%), Positives = 154/304 (50%), Gaps = 52/304 (17%) Query: 1061 VLDSAERTAGGKDLRPALKIVDAQGNDVLI--PGTDMPAQYFLPGKAIVQLEDGVQISSG 1118 ++ S + + GK + + +I++ + N L+ GT + + P I + +G +S G Sbjct: 1332 LIYSTSQVSPGKKINQSGQIIE-KSNSFLVLRKGTPLLS----PITGIFYVWNGDFVSQG 1386 Query: 1119 DTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVIT 1178 + + T DI G+P++ FEAR KG L+ T Sbjct: 1387 SPIMTLLYNKLKTGDIVQGIPKIEHFFEAR---------------------KGNVDLIQT 1425 Query: 1179 PVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQ 1238 + Y +++ +++ N +S+ IL+++ + I++ V Sbjct: 1426 -----NLYIKLLAFFKKYN----------KTLSEYRAVKRSILKIQKI------IIDGVC 1464 Query: 1239 DVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKV 1298 VY QG+ ++ KH EVIV+QM K IVN G + LEGE + + +++ N L V Sbjct: 1465 RVYCSQGILVSRKHFEVIVKQMTSKVKIVNGGETGLLEGEFINFQKLEKINTNLYHRRVV 1524 Query: 1299 GATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIP 1358 Y +LGITK SL TESFIS+ASFQETT+VL++AA+ + D L GLKENVI+G+LIP Sbjct: 1525 ---YEPLVLGITKVSLRTESFISSASFQETTKVLSQAALEKRIDFLNGLKENVILGKLIP 1581 Query: 1359 AGTG 1362 GTG Sbjct: 1582 GGTG 1585 >UniRef50_C1KR61 DNA-directed RNA polymerase n=1 Tax=Micromonas sp. RCC299 RepID=C1KR61_9CHLO Length = 1202 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 150/357 (42%), Positives = 208/357 (58%), Gaps = 21/357 (5%) Query: 591 IVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKK 650 N+ + K + +++ G + F D + GF A +G S+GIDD+ IP K Sbjct: 5 FCNRTVDKSEMKRLIKWVLLNYGTQKATRFVDHLKTLGFHSATLAGISLGIDDLRIPPVK 64 Query: 651 HEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRD 710 + AE ++ + ++ G +TA ER K +DIW ND + ++ + + ET I Sbjct: 65 SVFLKNAEKDILDNDLRYTRGQITAVERLEKALDIWNTTNDTLKNEVIAHFR-ETDI--- 120 Query: 711 GQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVL 770 FN +YMMA SGARG+ +Q+RQL GMRGLMA G +++ PI NFREGL V Sbjct: 121 --------FNPVYMMAFSGARGNISQVRQLVGMRGLMADQQGQVLDFPIRRNFREGLTVT 172 Query: 771 QYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGD 830 +Y IS +GARKGL DTAL+TANSGYLTRRLVDVAQ +++ + DC T EG+ + P D Sbjct: 173 EYMISCYGARKGLVDTALRTANSGYLTRRLVDVAQSVIIQQVDCETTEGLEVIP----SD 228 Query: 831 VKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDT 890 E ++GRV + V+ T L +NT + L + + V VRS ++C Sbjct: 229 KNE--YANIMGRVLLQPVVDEQTGKYLARKNTEISPALAAQLIK--LPKVVVRSALTCRL 284 Query: 891 DFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAE 947 + VC CYG DL++ ++ GEA+GV+AAQSIGEPGTQLTMRTFH GG + A E Sbjct: 285 N-SVCQLCYGWDLSKHRLVQLGEAVGVLAAQSIGEPGTQLTMRTFHTGGVFAGEATE 340 Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 99/234 (42%), Positives = 124/234 (52%), Gaps = 54/234 (23%) Query: 1133 DITGGLPRVADLFEARRPKE---PAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEM 1189 DI GLP+V +L EAR P E ++ A+++ + F +T G R Sbjct: 1016 DIVQGLPKVDELLEAREPVEKIASSMHAQLATLFLFYSKTYGLR---------------- 1059 Query: 1190 IPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKIN 1249 EG R R + + R +VNEVQ VY QGV I+ Sbjct: 1060 ----------EGCR--------------------RSLQEIRRMLVNEVQAVYGSQGVFIS 1089 Query: 1250 DKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEAN-GKVGATYSRDLLG 1308 DKHIE+IVRQM I + G ++ L G+ ++ RV+ EA G Y LLG Sbjct: 1090 DKHIEIIVRQMTTYVLITDPGETNLLPGDVIDLRRVE----HFEAKKGSNPVQYRPILLG 1145 Query: 1309 ITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362 IT+ASLA ESFI+AASFQET RVLT AAV G+ D L GLKENVI+GRLIPAGTG Sbjct: 1146 ITRASLAAESFIAAASFQETKRVLTRAAVEGQIDWLTGLKENVILGRLIPAGTG 1199 >UniRef50_D2IS78 DNA-directed RNA polymerase n=1 Tax=Cryptomonas paramecium RepID=D2IS78_9CRYP Length = 1230 Score = 267 bits (682), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 158/458 (34%), Positives = 245/458 (53%), Gaps = 27/458 (5%) Query: 583 VPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGID 642 +PK P + N+ + KK + ++++ + T D++ GF YA +G S+ I+ Sbjct: 7 LPKAAP-TFTNKVVDKKKLKQLMSWMFTTYKAGVTSHIVDKVKELGFQYATEAGISISIE 65 Query: 643 DMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQ 702 D+ +P KK I+ A + + I++++ G T ER I W A++ + ++ Sbjct: 66 DLKVPPKKQYIVKSATQQNSIIEKKYTRGETTIIERLQNTITSWGRASESIKNEVIKYF- 124 Query: 703 TETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITAN 762 E N +YMMA SGARG+ +Q+RQL GMRGLM+ P G II PI +N Sbjct: 125 -----------EVNEPLNPVYMMASSGARGNMSQVRQLVGMRGLMSDPHGQIIGLPIKSN 173 Query: 763 FREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMM 822 F+EGL +Y IS +GARKG+ DTALKTANSGYLTRRLVDV QD+VV E +C + G+++ Sbjct: 174 FKEGLTATEYIISCYGARKGVVDTALKTANSGYLTRRLVDVVQDIVVREKNCNSTHGVLI 233 Query: 823 --TPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAV 880 + + L+ R GR + + P + +N L+ + ++++ Sbjct: 234 RKKEYLHYDSLSLTLKMR--GRCLFDTLCTPDQCKPIARQNECLNNLLTQNIISKGINSI 291 Query: 881 KVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGA 940 +RS ++C + VC CYG +L +++ GEA+GV+AAQSIGEPGTQLTMRTFH GG Sbjct: 292 SIRSPLTCISSQFVCQLCYGWNLTTESLVDLGEAVGVLAAQSIGEPGTQLTMRTFHTGGV 351 Query: 941 ASRAAAESSIQVKNKGSIKLSN------VKSVVNSSGKLVITSRNTELKLIDEFGRTKES 994 + AE I G I++ N +K+ + LV +NT ++L F + Sbjct: 352 FTGEFAE-QINAPFNGIIEIPNHAKTNPIKTRHGNDALLV--EKNTHIRLWG-FQNENTT 407 Query: 995 YKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVS 1032 ++ G++L + EQ G+ +A T V +V+ Sbjct: 408 LEIKPGSLLFLTNNEQFKKGQILAEQPLKTTSVTEKVT 445 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 106/266 (39%), Positives = 151/266 (56%), Gaps = 19/266 (7%) Query: 1115 ISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRR 1174 + + LA+ E T DI GLPR+ ++ EAR+PKE LA +G + + Sbjct: 958 VDKNNILAKFTLEQPKTGDIIQGLPRIEEILEARKPKEICQLARRNGRIKIETDEHECST 1017 Query: 1175 LVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVT---- 1230 L + + S+P + I +++ V + V +++G H++L + + Sbjct: 1018 LKVIE-NKSEPIKYQIRSSQKMYVSNKQLVNVASKLTEGTPNLHEVLSIFFTYYTNELKQ 1076 Query: 1231 ------------RYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGE 1278 RY+VNEVQ+VY+ QGV I+DKHIE+I ++M K + ++G + L E Sbjct: 1077 SSATRLALLKTRRYLVNEVQNVYQSQGVHISDKHIEIIAKRMTSKVQVNSSGDTTLLPNE 1136 Query: 1279 QVEYSRVKIANRE-LEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAV 1337 +E + + AN LE+ GK ATYS LLGITK SL T SF+SAA FQETTRVL+ AA+ Sbjct: 1137 LIELEQFEEANGAILESKGK-SATYSPVLLGITKTSLNTNSFLSAAGFQETTRVLSRAAI 1195 Query: 1338 AGKRDELRGLKENVIVGRLIPAGTGY 1363 G++D L GLKENV GRLIPAGTGY Sbjct: 1196 EGRKDSLTGLKENVSTGRLIPAGTGY 1221 >UniRef50_C0JWS3 DNA-directed RNA polymerase n=1 Tax=Pycnococcus provasolii RepID=C0JWS3_9CHLO Length = 1870 Score = 262 bits (670), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 157/459 (34%), Positives = 253/459 (55%), Gaps = 34/459 (7%) Query: 587 LPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVI 646 L + + +L K I ++L + +R+ GL +V D++ GF Y+ G S+ + D++I Sbjct: 4 LSLNFLQTSLDKGTIKRLLTSVWRVYGLNVSVDTFDELKEIGFEYSTYVGFSMSLGDLMI 63 Query: 647 PEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETV 706 P +K ++ + + + + + GLVT E++ +++D+W ++ + ++++N Sbjct: 64 PPQKKWMMRAVKMQDELCEHRTELGLVTPIEQFQRIMDLWHLTSEALRGSIIENF----- 118 Query: 707 INRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREG 766 K + N +Y MA SGARGS AQ+RQL GMRGLMA P G ++E PI ANFREG Sbjct: 119 -------AKTNTRNPVYTMAQSGARGSMAQVRQLVGMRGLMANPKGEVVEYPIRANFREG 171 Query: 767 LNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGI-MMTPV 825 L + ++ IS +G RKGL DTA++TA++GYLTRRLVDVA ++V + DCGT I + T + Sbjct: 172 LTLAEFAISGYGGRKGLVDTAVRTADAGYLTRRLVDVAHVVIVRQVDCGTQWSIPLRTLM 231 Query: 826 IEGGDVKEPLRDRVLGRVTAEDVLKPGTAD-ILVPRNTLLHEQWCDLLEENSVDAVKVRS 884 + GD + +R +GRV A ++P + I N + +L + V + VRS Sbjct: 232 SQDGDPLISIANRAVGRVVASMPIQPSLFEKIHCYPNQTISRDLVKVLNQLKVTTLPVRS 291 Query: 885 VVSCD--TDF-----------GVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLT 931 ++C + F +C CYG D + I++ +A+G+IAAQSIGEPGTQLT Sbjct: 292 PLTCGMWSPFQEIKATKSQLQSICQLCYGWDYSEERIVDLNQAVGIIAAQSIGEPGTQLT 351 Query: 932 MRTFHIGGAASRAAAESSIQVKNKGSI--KLSNVKSVVNSS--GKLVITSRNTELKLIDE 987 MRTFH GG A I+ + G+I + SV+ +S +T T L++ E Sbjct: 352 MRTFHTGGVF-EGTATKRIRSAHTGTIVFDVPVQGSVIRTSYGNHAFLTYSPTYLRIQKE 410 Query: 988 FGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMP 1026 G E + +P ++L GE++ + + ++P+ P Sbjct: 411 DGLPDEVFLIPSRSILYHRPGEKIHAKQPI--FEPNYRP 447 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 72/152 (47%), Gaps = 26/152 (17%) Query: 1223 LRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEY 1282 L G+ V +VN +Q Y QGV DKH+EVIVR+ + G S L E+V Sbjct: 1560 LAGLLGVRLALVNRIQVTYLQQGVDFADKHVEVIVRRFTSQVHFKTGGGSRHLPTERVH- 1618 Query: 1283 SRVKIANRELEANGKV---GATYSRDL--------------LGITKASLATESFISAASF 1325 EL A+ +TYS L G+TK +L +SF+ +ASF Sbjct: 1619 --------ELAAHTSTWLTSSTYSHRLKLCLAPTPKYLPSVTGLTKTALFAQSFLGSASF 1670 Query: 1326 QETTRVLTEAAVAGKRDELRGLKENVIVGRLI 1357 QE+++ V G ++ L GLK+ VI GR + Sbjct: 1671 QESSKTFIRVGVKGAQNFLGGLKDQVITGRTL 1702 >UniRef50_Q32RG2 DNA-directed RNA polymerase subunit beta'' n=1 Tax=Zygnema circumcarinatum RepID=RPOC2_ZYGCR Length = 1095 Score = 262 bits (669), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 160/438 (36%), Positives = 243/438 (55%), Gaps = 19/438 (4%) Query: 593 NQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHE 652 NQ + K AI +++ LG T DQ+ GF Y+ ++G S+GIDD++ K+ Sbjct: 11 NQVMDKSAIKQLIIRLVACLGRVCTAHILDQLKTLGFQYSTQTGISLGIDDLLASPLKNW 70 Query: 653 IISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQ 712 I+ +AE E QE + G + A ER ++++ W ++ + + M + DG Sbjct: 71 ILQDAENEANVSQEYCRHGYIHAVERLRQIVETWHTTSEFLKREMTVSFNI-----LDG- 124 Query: 713 EEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQY 772 FN ++MM+ SGARG+ +Q+ QL GMRGL++ P G+II+ PI +N REGL++ +Y Sbjct: 125 ------FNPVHMMSFSGARGNVSQVHQLVGMRGLISDPQGNIIDLPIQSNLREGLSLTEY 178 Query: 773 FISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPV-IEGGDV 831 IS +GARKG+ DTA++TA++GYLTRRLV+VAQ +V+ DC T+EGI++ + G+ Sbjct: 179 IISCYGARKGVVDTAIRTADAGYLTRRLVEVAQHVVIRNVDCNTYEGIILRSIRTRQGNA 238 Query: 832 KEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTD 891 +R++GRV A L G I V RN + L S A+ VRS ++C T Sbjct: 239 YLTQENRIIGRVLARP-LYFGKRCIAV-RNQDIGPDLAAKLSIISPQAILVRSPITCKTT 296 Query: 892 FGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAAS-RAAAESSI 950 VC CYG + +G +++ GEAIGV+A QSIGEPGTQLT+RTFH GG + A Sbjct: 297 DWVCQLCYGWGVNQGKMVSLGEAIGVVAGQSIGEPGTQLTLRTFHTGGVFTGDIANHLRA 356 Query: 951 QVKNKGSIKLSNVKSVVNSSGKLVITS-RNTELKLIDEFGRTKESYKVPYGAVLAKGDGE 1009 + N K N G+LV ++ + +I + G+ K S VP ++L + + Sbjct: 357 PFNGIAHFETHNCKPTRNRHGRLVWKCLQDLTITVIGQ-GK-KHSLNVPSQSLLLINNNQ 414 Query: 1010 QVAGGETVANWDPHTMPV 1027 V + +A P+ Sbjct: 415 YVESKQVIAEVRASIAPI 432 Score = 113 bits (282), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 90/284 (31%), Positives = 121/284 (42%), Gaps = 79/284 (27%) Query: 1115 ISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRR 1174 I+ GD + + E T DI GLP+ L EAR E + E ++ + + R Sbjct: 776 INRGDIVITMMYEQLRTTDIIQGLPKAEQLLEARSFNEVVLKLENDFVMLTERIARQLRS 835 Query: 1175 LVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIV 1234 L R ++S H + L V Sbjct: 836 L-----------------------------SRSYMLSTKESTKHSQIDL----------V 856 Query: 1235 NEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAG------------------------ 1270 N +Q VY QGV+I DKHIE+IVRQM K +V G Sbjct: 857 NRIQTVYLSQGVRIVDKHIEIIVRQMSSKVMLVENGDPLAVSSGGLICLPLPPIGSFLPE 916 Query: 1271 ------------SSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATES 1318 + FL E VE +R + N ++ Y LLGITKASL T S Sbjct: 917 NWIEIPLSYVIDNHTFLPRELVELTRAQKINYVIQN----PVAYKPVLLGITKASLNTNS 972 Query: 1319 FISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362 FIS ASFQ+T RVL+++A+ + D +RGL+ENV+ GR+IPAGTG Sbjct: 973 FISEASFQQTARVLSKSAIKNRVDWIRGLQENVLFGRMIPAGTG 1016 >UniRef50_P21422 DNA-directed RNA polymerase subunit beta' n=6 Tax=Plasmodium RepID=RPOC1_PLAFA Length = 575 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 154/515 (29%), Positives = 262/515 (50%), Gaps = 34/515 (6%) Query: 16 EFDAIKIALASPDMIRSWS---------FGEVKKPETINYRTFKPERDGLFCARIFGPVK 66 F +K+ + +P I WS GEV P TIN+ T P +GLFC +IF + Sbjct: 8 NFIGLKLNILNPKQIIKWSSIFYKNKIIIGEVLIPNTINFNTGLPILNGLFCEKIFDYMY 67 Query: 67 DYECLCGK--YKRLKHRGVI-CEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSR 123 + C C K Y + C+ C ++ R+ ++G I L P H+W+L P + Sbjct: 68 KWNCNCNKKMYNINNFSFFLYCKFCKNKLIININRKYKLGFIFLNIPILHLWYLTG-PLK 126 Query: 124 IG-LLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEF----DA 178 + LLL+ + V Y + + + +N++ +Q + + + ++ Sbjct: 127 VASLLLN------KNVFYLKFLIYYKYFFSNIKYKQYFYYNKLFSKINLYKKKYKNIIQY 180 Query: 179 KMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMI 238 + L++++L E +E L N +K L K+I L F+ + KP W+ Sbjct: 181 LFSHNILYKKLQNINLLTELLNNKELLLINNKYYNKKYLYKKINLFNLFILNNIKPNWIF 240 Query: 239 LTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRN--EK 296 L +LP+LP LRP ++ + S +N+ YR +I +NN+LK L L + EK Sbjct: 241 LDLLPILPAGLRPYFYINNSTYIISTINENYRLIILKNNKLKYWLYLRNNIFFIFEIIEK 300 Query: 297 RMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIT 356 R+LQ+ +D LL N + N + + +GK + LLGKRVD+SGRSVIT Sbjct: 301 RLLQQLIDYLLIN-----KLILKNNNTFFNFSKTFQGKYSTIKYKLLGKRVDFSGRSVIT 355 Query: 357 VGPYLRLHQCGLPKKMALELFKPFIYGKLELRG-LATTIKAAKKMVEREEAVVWDILDEV 415 V P + + GLP +++ LFKPF+ L+ L K+ ++ + ++ L+ + Sbjct: 356 VNPSIIYNNIGLPYYISINLFKPFLINILKYNSKLNIIFKSL--LINKNLFIIQKFLNRL 413 Query: 416 IREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLE 475 ++ +++NRAPTLHR+ +Q+F+P+L EG +++ +PL C ++NADFDGDQM++ +PL Sbjct: 414 LQNQFIIINRAPTLHRMNLQSFKPLLTEGYSLKFYPLGCTSFNADFDGDQMSIFLPLIKT 473 Query: 476 AQLEARALMMSTNNILSPANGEPIIVPSQDVVLGL 510 ++ E+ + NI+SP+N + + Q LG+ Sbjct: 474 SKFESNINLNFDKNIISPSNNKNLFSNLQYYKLGI 508 >UniRef50_A2T322 DNA-directed RNA polymerase subunit beta'' n=3 Tax=Moniliformopses RepID=RPOC2_ANGEV Length = 1414 Score = 256 bits (653), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 138/369 (37%), Positives = 212/369 (57%), Gaps = 16/369 (4%) Query: 593 NQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHE 652 N+ + + AI ++ G+ T DQI GF A + S+GIDD++ K Sbjct: 11 NKMMDRTAIKHLIRRLISHFGITFTANILDQIKTLGFHQATNASISLGIDDLLTAPLKSW 70 Query: 653 IISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQ 712 +I +AE + ++ + G V + E+ ++I+ W A ++ + + M N + Sbjct: 71 LIQDAEKQGYSSEQHHRYGSVHSVEKLRQLIETWYATSEYLKQEMNPNFRMTD------- 123 Query: 713 EEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQY 772 N ++MM+ SGARGS +Q+ QL GMRGLM+ P G II+ PI NFREGL++ +Y Sbjct: 124 -----PLNPVHMMSFSGARGSISQVHQLVGMRGLMSDPQGQIIDLPIQNNFREGLSLTEY 178 Query: 773 FISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVK 832 IS +GARKG+ DTA++T+++GYLTRRLV+V Q +VV + DCGT GI++ +G Sbjct: 179 IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRKKDCGTLRGILLNSNRDGRRSI 238 Query: 833 EPL-RDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTD 891 +P + R++GRV A+++ + RN + + L + V + +RS ++C + Sbjct: 239 QPFSQQRLIGRVLADNLYV--NMRCIATRNQDISNELARRLVISQVRQIYIRSPLTCKSM 296 Query: 892 FGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQ 951 F +C CYG +L H++ GEA+G+IA QSIGEPGTQLT+RTFH GG + AE I+ Sbjct: 297 FCICQLCYGWNLTYNHLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGDIAE-HIR 355 Query: 952 VKNKGSIKL 960 G IK Sbjct: 356 TPFNGIIKF 364 Score = 129 bits (324), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 71/132 (53%), Positives = 92/132 (69%), Gaps = 5/132 (3%) Query: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLEGEQVEYSRVKIANR 1290 ++VN+VQ VYR QGV+I+DKHIE+IVRQM K + G ++ F GE +E SR + NR Sbjct: 1223 FLVNKVQKVYRSQGVQISDKHIEIIVRQMTSKVITLEDGMANVFSPGELIELSRAQRMNR 1282 Query: 1291 ELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKEN 1350 L K ++ +LG+TKASL T SFIS ASFQETTRVL AA+ G+ D L+GLKEN Sbjct: 1283 AL----KESISHKPIVLGMTKASLNTTSFISEASFQETTRVLARAALQGRIDWLKGLKEN 1338 Query: 1351 VIVGRLIPAGTG 1362 V+ G ++P GTG Sbjct: 1339 VVPGSVVPTGTG 1350 >UniRef50_A6NYC6 DNA-directed RNA polymerase n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NYC6_9BACE Length = 1101 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 222/769 (28%), Positives = 357/769 (46%), Gaps = 86/769 (11%) Query: 193 DLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEW--MILTVLPVLPPDLR 250 D ++ E L + +T +K +L+ I L G+K MI+ + V+P +R Sbjct: 184 DDDETYENLATYIGKTVFRSKNSRLSFLINL------QGHKDRLYAMIMEYISVVPLGMR 237 Query: 251 PLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNG 310 P + + + + Y VI+ N LK ++ + R E L D Sbjct: 238 PDIANRHDQLSCA-----YDDVISANKNLKMVMSGMF-------DARTFTERYKKLSDAV 285 Query: 311 RRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPK 370 R S+K KS+ D + GK G R+ +LGKRVDYSGRSVIT+ P+L + LP+ Sbjct: 286 YRLLVSPKSSKSSRKSVLDKLTGKHGHIREKMLGKRVDYSGRSVITIDPFLSIRNVKLPR 345 Query: 371 KMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLH 430 MA +LF+ I + + I K+ + I+D++ PV++ R PTLH Sbjct: 346 DMAPKLFRSHILSSMNNPNPSDWIGMDKRDKCNSKIAASGIIDDI----PVVIGRQPTLH 401 Query: 431 RLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNI 490 + ++AF+ L ++I+++PL +NADFDGDQM V VP++ A E R LM NI Sbjct: 402 KPSMRAFKAKLTNERSIRINPLCVTGFNADFDGDQMWVRVPVSEGAVQEVRDLMSIEQNI 461 Query: 491 LSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL-HARVK 549 P NGE ++P Q+++ GL TR + AKG + + + +RS L + RV+ Sbjct: 462 YYPKNGECSVMPRQEIIYGLNVCTRADM-AKGSSI------KTYQDHRSLFDDLFYQRVR 514 Query: 550 VRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCY 609 V T V D GR +PK + + + + K IS + Sbjct: 515 VSDT----------VTLGGYTD-CAGRVAFAACLPKAVFEQMGVKEITSKTISGYVEAML 563 Query: 610 RILGLKPTVIFADQIMYTGFAYAARSGASVGI--DDMVIPEKKHEIISEAEAEVAEIQEQ 667 L + + D ++ GF ++ + D+ + E E+ E+ E+ E+ Sbjct: 564 E-LSIDSAIDGIDMMVELGFKVGYLYPPTLNLLDDEDITYADDMEAFHESMREITELYER 622 Query: 668 FQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMAD 727 GL + A D+ +++ ++ +T+ +R G+E V +A+ Sbjct: 623 ---GLEEESA--------YDATYDKNFRSIETKVK-DTIFDRVGKESGFVR------LAE 664 Query: 728 SGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTA 787 SGARGS + + Q+ G +G + K + I ++ E L L++F++ +G R+GL + + Sbjct: 665 SGARGSKSNMVQMYGYKGRIQKSSSESFKAVIEHSYTEQLTPLEHFVTAYGGRQGLINKS 724 Query: 788 LKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTP------VIEGGDVKEPLRDRVLG 841 L TA++GY R++ V+T DDCGT EGI + + + G V E + G Sbjct: 725 LNTADTGYAMRKMWHATSPYVITCDDCGTTEGIEIKKSDIAMFLQDSGGVDEIFCKIITG 784 Query: 842 RVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGR 901 R A GT N + ++ L +N+ +V +RS +SC C CYG Sbjct: 785 RYQA------GT-------NIYIDKRMASELCKNNA-SVTIRSPISCKDP--CCKKCYGD 828 Query: 902 DLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSI 950 D + + G +G IAA SIGEPGTQL+M +F GG AS+ SS Sbjct: 829 DPSTHRLAAIGLPVGFIAAHSIGEPGTQLSMDSFKKGGIASKGGVTSSF 877 >UniRef50_P60290 DNA-directed RNA polymerase subunit beta'' n=2 Tax=Physcomitrella patens RepID=RPOC2_PHYPA Length = 1330 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 133/355 (37%), Positives = 209/355 (58%), Gaps = 18/355 (5%) Query: 593 NQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHE 652 N+ + + AI ++++ G+ T DQ+ GF A ++ S+GIDD++ K Sbjct: 5 NKVMDRTAIKQLISRLITHFGITYTTYILDQLKTVGFKQATQAAISLGIDDLLTAPSKSW 64 Query: 653 IISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQ 712 +I +AE + ++ ++ G V A E+ ++I+ W A ++ + + M N + Sbjct: 65 LIQDAEQQGYISEKHYRYGNVHAVEKLRQLIETWYATSEYLKQEMNPNFRMTD------- 117 Query: 713 EEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQY 772 N ++MM+ SGARGS +Q+ QL GMRGLM+ P G II+ PI +NFREGL++ +Y Sbjct: 118 -----PLNPVHMMSFSGARGSTSQVHQLVGMRGLMSDPQGQIIDLPIQSNFREGLSLTEY 172 Query: 773 FISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVK 832 IS +GARKG+ DTA++T+++GYLTRRLV+V Q +VV + DCGT E I +TP+ + K Sbjct: 173 IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRKVDCGTSENIFVTPL--QNNYK 230 Query: 833 EPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDF 892 + ++++GR+ A+++ G + RN + L + +RS + C + Sbjct: 231 K--NNKLIGRILADNIYINGRC--IAIRNQDITTNLVISLINFQRKGIFIRSPLICKSML 286 Query: 893 GVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAE 947 +C CYG L G++I GEA+G+IA QSIGEPGTQLT+RTFH GG + AE Sbjct: 287 WICQLCYGWSLTHGNLIELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGDIAE 341 Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 107/265 (40%), Positives = 134/265 (50%), Gaps = 45/265 (16%) Query: 1099 YFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAE 1158 Y G AI+ G + GD L + E + DI GLP+V L EAR +I E Sbjct: 1058 YLATGGAIIHNNYGEIVKEGDILITLIYERLKSGDIIQGLPKVEQLLEARLTNPVSINLE 1117 Query: 1159 ISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPH 1218 FG+ K +T GS W G +S Sbjct: 1118 ----KGFGEWNKD-----MTNFFGS--------LW-------------GYFLSAQISMEQ 1147 Query: 1219 DILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLEG 1277 + L VN++Q VYR QGV I+DKHIE+IVRQM K + G ++ FL G Sbjct: 1148 SQVNL----------VNQIQKVYRSQGVNISDKHIEIIVRQMTSKVFTLEDGMTNGFLPG 1197 Query: 1278 EQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAV 1337 E +E++R K NR LE Y LLGITKASL T+SFIS ASFQETTRVL +AA+ Sbjct: 1198 ELIEFARAKRMNRALEE----VIPYKPVLLGITKASLNTQSFISEASFQETTRVLAKAAL 1253 Query: 1338 AGKRDELRGLKENVIVGRLIPAGTG 1362 G+ D L+GLKENVI+G +IP GTG Sbjct: 1254 RGRIDWLKGLKENVILGGIIPTGTG 1278 >UniRef50_P23581 DNA-directed RNA polymerase subunit beta'' n=2 Tax=Euglena RepID=RPOC2_EUGGR Length = 830 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 129/330 (39%), Positives = 199/330 (60%), Gaps = 22/330 (6%) Query: 622 DQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNK 681 D++ GF YA +G S+G+ D+ IP K ++ +E + + + ++++G++ ++ Sbjct: 39 DKMKNFGFTYATTTGLSLGLGDLKIPSSKANLVKSSEKILFKTRNRYKNGMINFINVLDE 98 Query: 682 VIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLA 741 DIW N+ + K ++NL+ +N +Y M SGARGS Q++QL Sbjct: 99 ERDIWNVVNENLKKESINNLRQSDFLN------------PLYSMTLSGARGSITQVKQLI 146 Query: 742 GMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLV 801 GMRGLM+ G++I PI NF+EGLN+ +YF+S +GARKGL DTALKTAN+GYLTRR++ Sbjct: 147 GMRGLMSDSQGNVIPFPIKTNFKEGLNITEYFVSCYGARKGLIDTALKTANAGYLTRRMI 206 Query: 802 DVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEP--LRDRVLGRVTAEDVLKPGTADILVP 859 AQ+L+V DC T + +++ D +E L+++++GRV A+ ++ T DILV Sbjct: 207 YTAQNLIVKRSDCFTKYNTCV--LLQNQDKEELKFLKEKLIGRVLAKTIVNAKTGDILVS 264 Query: 860 RNTLLHEQWCDLLEENSVDA--VKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGV 917 + C+ + ++ V +R+ +C G+C CYG +LA G ++ GE +G+ Sbjct: 265 AG----QDICNYTFKKIINFPEVYIRTPFNCVLMEGICQICYGWNLACGKMVELGECVGI 320 Query: 918 IAAQSIGEPGTQLTMRTFHIGGAASRAAAE 947 +AAQSIGEPGTQLTMRTFH GG S A E Sbjct: 321 LAAQSIGEPGTQLTMRTFHTGGVFSAKAKE 350 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 89/261 (34%), Positives = 136/261 (52%), Gaps = 49/261 (18%) Query: 1105 AIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVS 1164 ++++ED I L R+ T DI GLP+V L EAR + S Sbjct: 615 TLMRIEDKPFIRKNQLLYRVNFVREKTYDIVQGLPKVEKLLEAR-------------MTS 661 Query: 1165 FGKETKGKRRLVITPVDGS--DPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILR 1222 KE ++T + D YE ++ + V Sbjct: 662 SLKEIINNPHDILTESFFTFLDDYENLVAARKSFEV------------------------ 697 Query: 1223 LRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEY 1282 + +Y+++ VQ VY+ QGVKI DKHIE+IV+Q+ K + N G S F+ G+ ++ Sbjct: 698 ------IQKYLIDGVQTVYKSQGVKIADKHIELIVKQITSKVIVTNPGDSSFMVGDFLDL 751 Query: 1283 SRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRD 1342 + V++ N+ L N V Y ++G+T+ SL+++SFI+ ASFQETTRVLT+AA+ G+ D Sbjct: 752 NLVEVLNKRL-VNSIV---YEPIIMGLTRFSLSSQSFIAQASFQETTRVLTKAALQGRAD 807 Query: 1343 ELRGLKENVIVGRLIPAGTGY 1363 L GLKEN+++G +IPAGTG+ Sbjct: 808 WLSGLKENLVLGNIIPAGTGF 828 >UniRef50_B9VH97 DNA-directed RNA polymerase n=1 Tax=Syntrichia ruralis RepID=B9VH97_TORRU Length = 1358 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 132/355 (37%), Positives = 208/355 (58%), Gaps = 15/355 (4%) Query: 593 NQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHE 652 N+ + + AI ++++ G+ T DQ+ GF A ++ S+GIDD++ K Sbjct: 11 NKVIDRTAIKQLISRLIAHFGITYTTHILDQLKSIGFKQATQAAISLGIDDLLTAPSKGW 70 Query: 653 IISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQ 712 +I +AE + ++ ++ G V A E+ ++I+ W A ++ + + M N + +N Sbjct: 71 LIQDAEQQGYTSEKHYRYGNVHAVEKLRQLIETWYATSEYLKQEMNPNFRMTDPLN---- 126 Query: 713 EEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQY 772 ++MM+ SGARGS +Q+ QL GMRGLM+ P G II+ PI +NFREGL++ +Y Sbjct: 127 --------PVHMMSFSGARGSTSQVHQLVGMRGLMSDPQGQIIDLPIQSNFREGLSLTEY 178 Query: 773 FISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVK 832 IS +GARKG+ DTA++T+++GYLTRRLV+V Q +VV + DCGT +GI P+ + K Sbjct: 179 IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRKVDCGTSQGIFAVPLRDYSK-K 237 Query: 833 EPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDF 892 + +++GR+ AE++ + RN + L + +RS ++C + Sbjct: 238 SNHQQKLIGRILAENIY--VNKRCIATRNQDITTTLVMSLRTIKKKPIFIRSPLTCKSMI 295 Query: 893 GVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAE 947 +C CYG L G++I GEA+G+IA QSIGEPGTQLT+RTFH GG + AE Sbjct: 296 WICQLCYGWSLTHGNLIELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVYTGDIAE 350 Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 104/259 (40%), Positives = 133/259 (51%), Gaps = 45/259 (17%) Query: 1105 AIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVS 1164 A + G + GDTL + E + DI GLP+V L EAR +I E G Sbjct: 1086 ATIHNNYGEIVKEGDTLITLVYERLKSGDIIQGLPKVEQLLEARPINSVSIHLE-KGFED 1144 Query: 1165 FGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLR 1224 + K+ +T GS W G +S L L Sbjct: 1145 WNKD--------MTNFFGS--------LW-------------GYFLSARISMEQSQLNL- 1174 Query: 1225 GVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLEGEQVEYS 1283 V+++Q VYR QGV+I+DKHIE+IVRQM K + G ++ FL GE +E+ Sbjct: 1175 ---------VDQIQKVYRSQGVQISDKHIEIIVRQMTSKVITLEDGMTNGFLPGELIEFL 1225 Query: 1284 RVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDE 1343 R K NR LE Y LLGITKASL T+SFIS ASFQETTRVL +AA+ G+ D Sbjct: 1226 RAKRMNRALEE----VIPYKPVLLGITKASLNTQSFISEASFQETTRVLAKAALRGRIDW 1281 Query: 1344 LRGLKENVIVGRLIPAGTG 1362 L+GLKENVI+G ++PAGTG Sbjct: 1282 LKGLKENVILGGIVPAGTG 1300 >UniRef50_Q8MA10 DNA-directed RNA polymerase subunit beta'' n=1 Tax=Chaetosphaeridium globosum RepID=RPOC2_CHAGL Length = 1373 Score = 250 bits (638), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 132/357 (36%), Positives = 207/357 (57%), Gaps = 17/357 (4%) Query: 593 NQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHE 652 NQ + + + +++ +G+ DQ+ GF YA + G S+GIDD++ K Sbjct: 11 NQVMDRSGMKNLISRLISYIGVTSASEVLDQLKTIGFNYATKFGISLGIDDLLTTPFKGW 70 Query: 653 IISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQ 712 + +AE + ++ + G + A E+ ++I+ W ++ + + M N + Sbjct: 71 FMQDAEKHASISEKHNRYGTIHAVEKLRQLIETWYTTSEYLKQEMSPNFKITD------- 123 Query: 713 EEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQY 772 +N ++MM+ SGARG+A+Q+ QL GMRGLMA P G II+ PI +NFREGL++ +Y Sbjct: 124 -----PYNPVHMMSFSGARGNASQVHQLVGMRGLMADPQGQIIDLPIQSNFREGLSLTEY 178 Query: 773 FISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVK 832 IS +GARKG+ DTA++TA++GYLTRRLV+V Q +VV + DCG+ +GI + P+ E +K Sbjct: 179 IISCYGARKGVVDTAVRTADAGYLTRRLVEVVQHIVVRKIDCGSIDGIQLKPLKE-KKIK 237 Query: 833 EPL--RDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDT 890 DR++GRV A D+ + RN + + + A+ +RS ++C + Sbjct: 238 NLFGSADRLVGRVLATDLFIDKRC--IAKRNQDIGSELAINIINYQKKAILIRSPLTCKS 295 Query: 891 DFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAE 947 +C +CYG G ++ GEA+G+IA QSIGEPGTQLT+RTFH GG + AE Sbjct: 296 KQWLCQYCYGWSPCYGDMVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGDIAE 352 Score = 137 bits (344), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 103/252 (40%), Positives = 130/252 (51%), Gaps = 49/252 (19%) Query: 1115 ISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFG--KETKGK 1172 I+SGD I E T+DI GLP+V L EA RP L +S + FG Sbjct: 1109 ITSGDNFITIVYERFKTRDIIQGLPKVEQLLEA-RP-----LNNLSSNLDFGFLDWNTDI 1162 Query: 1173 RRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRY 1232 RL+ P W G +S L L Sbjct: 1163 SRLLGNP-------------W-------------GFFLSSLIIIRQSQLEL--------- 1187 Query: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQML-RKATIVNAGSSDFLEGEQVEYSRVKIANRE 1291 VN++Q VY+ QGV+I+DKH+E+IVRQM R T G + FL GE V+ + + N+ Sbjct: 1188 -VNQIQKVYQSQGVQISDKHLEIIVRQMTSRVLTTEENGPNAFLPGELVDLFKAQRMNQI 1246 Query: 1292 LEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 LE Y LLGIT+ASL T SFIS ASFQETT+VLT+AA+ G+ D L+GLKENV Sbjct: 1247 LEN----SLAYKPILLGITRASLNTYSFISEASFQETTKVLTKAALQGRIDWLQGLKENV 1302 Query: 1352 IVGRLIPAGTGY 1363 I+G +IPAGTGY Sbjct: 1303 ILGGIIPAGTGY 1314 >UniRef50_C1QDX2 RNA polymerase Rpb1 n=1 Tax=Brachyspira murdochii DSM 12563 RepID=C1QDX2_9SPIR Length = 502 Score = 248 bits (634), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 169/519 (32%), Positives = 271/519 (52%), Gaps = 73/519 (14%) Query: 932 MRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTEL---KLIDEF 988 MRTFHIGG A++ E+ ++V I + + V + IT+R +L +++++F Sbjct: 1 MRTFHIGGVATQMVEENEVKVNY--PIYIEQFSNYVVQPNGVKITARKGDLVIRRVLEKF 58 Query: 989 GRT-------KESYKVPYGAVLAKG-DGEQV----------------------------- 1011 + + + KV G V+A DG ++ Sbjct: 59 EKNTIKELLVENNSKVLIGDVIANTKDGSEIKATHNGTLIVTDDDKYVMITGVKHSLAIK 118 Query: 1012 AGGE-------------TVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSS 1058 G E +A++D + P+I+E SG VR+ D+I G+T+ DE TG + Sbjct: 119 VGSEYKVDEHVFIEPNTVIASFDTYNEPIISEKSGIVRWQDIIPGRTLVESIDEQTGNVT 178 Query: 1059 LVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSG 1118 ++ + + + ++P +LI G P + +P A + +E+ ++ G Sbjct: 179 NIIQEFKDAS-----MQPK----------ILITGEGDPFETDIPNGAQLMVENNQKVEIG 223 Query: 1119 DTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVIT 1178 + +A+ + ++DITGGLPRV +L EA++PK+ AI+A I G V G KGK+ V+ Sbjct: 224 EVIAKTTRIQQKSRDITGGLPRVQELLEAQKPKDTAIIAGIDGEVEIGGSHKGKK--VVK 281 Query: 1179 PVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQ 1238 + D + ++P + L V G+ V+ G + G PHDIL +G A+ Y++ E+Q Sbjct: 282 IRNEFDETKHLVPHGKMLLVRNGDYVKTGTQLCAGKINPHDILETQGDLALQTYLLEEIQ 341 Query: 1239 DVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKV 1298 VY+ QGV INDKH +I+RQMLR+ I + G + ++ G+ V+ + N+ E G Sbjct: 342 GVYKQQGVGINDKHFALIIRQMLRRLEITDPGDTKYIVGQYVDKYEFEEENKRYEEAGGS 401 Query: 1299 GATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIP 1358 A+ LLG+TKA+L TESFIS+ASFQETT+VLT AA+ GK D+L GLKENVI+G LIP Sbjct: 402 PASGKPVLLGLTKAALNTESFISSASFQETTKVLTNAAIKGKVDKLLGLKENVIIGHLIP 461 Query: 1359 AGTGYA-YHQDRMRRRAAGEAPAAPQVTAEDASASLAEL 1396 AGTG Y++ + + +G+ V D + ++ Sbjct: 462 AGTGVKLYNKLHVYNKHSGDLDKKDNVETTDKEEEVMKI 500 >UniRef50_P06274 DNA-directed RNA polymerase subunit beta'' n=9 Tax=Embryophyta RepID=RPOC2_MARPO Length = 1386 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 133/355 (37%), Positives = 205/355 (57%), Gaps = 17/355 (4%) Query: 593 NQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHE 652 N+ + + AI ++++ G+ T DQ+ GF A S+GIDD++ K Sbjct: 11 NKVMDRTAIKQLISRLIAHFGITYTTHILDQLKTLGFQQATFGAISLGIDDLLTAPSKSW 70 Query: 653 IISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQ 712 +I +AE ++ G + A E+ ++I+ W A ++ + + M N + +N Sbjct: 71 LIEDAEQYGNLSEKHHNYGSLHAVEKLRQLIETWYATSEYLKQEMNPNFRITDPLN---- 126 Query: 713 EEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQY 772 ++MM+ SGARGS +Q+ QL GMRGLM+ P G II+ PI +NFREGL++ +Y Sbjct: 127 --------PVHMMSFSGARGSTSQVHQLVGMRGLMSDPQGQIIDLPIQSNFREGLSLTEY 178 Query: 773 FISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVK 832 IS +GARKG+ DTA++T+++GYLTRRLV+V Q +VV + DCGT GI + + E K Sbjct: 179 IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRKVDCGTLYGINVNNLSEK---K 235 Query: 833 EPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDF 892 + +++GRV AE++ + PRN + + L + +RS ++C + Sbjct: 236 NNFQQKLIGRVIAENIYIDHRC--IAPRNQDIGALLANRLITLKTKQIFLRSPLTCKSMN 293 Query: 893 GVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAE 947 +C CYG L+ G++I GEA+G+IA QSIGEPGTQLT+RTFH GG + AE Sbjct: 294 WICQLCYGWSLSHGNLIEMGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGDIAE 348 Score = 139 bits (351), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 74/131 (56%), Positives = 96/131 (73%), Gaps = 5/131 (3%) Query: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLEGEQVEYSRVKIANRE 1291 +V+++Q VY+ QGV+I++KHIE+IVRQM K + G ++ FL GE +E+SR + NR Sbjct: 1194 LVDQIQKVYQSQGVQISNKHIEIIVRQMTSKVITLEDGMTNVFLPGELIEFSRTQKMNRA 1253 Query: 1292 LEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 LE Y LLGITKASL T+SFIS ASFQETTRVL +AA+ G+ D L+GLKENV Sbjct: 1254 LEE----AVPYKPILLGITKASLNTQSFISEASFQETTRVLAKAALKGRIDWLKGLKENV 1309 Query: 1352 IVGRLIPAGTG 1362 I+G L+PAGTG Sbjct: 1310 ILGGLVPAGTG 1320 >UniRef50_P60289 DNA-directed RNA polymerase subunit beta'' n=22 Tax=Spermatophyta RepID=RPOC2_AMBTC Length = 1373 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 134/369 (36%), Positives = 209/369 (56%), Gaps = 15/369 (4%) Query: 593 NQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHE 652 N+A+ A+ ++++ G+ T DQ+ GF A + S+GIDD++ K Sbjct: 15 NKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFRQATLTSISLGIDDLLTTPSKGW 74 Query: 653 IISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQ 712 ++ +AE + +++ G V A E+ + I+IW A ++ + + M N + Sbjct: 75 LVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTD------- 127 Query: 713 EEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQY 772 FN +Y+M+ SGARG+A+Q+ QL GMRGLM+ P G +I+ PI +N REGL++ +Y Sbjct: 128 -----PFNPVYIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY 182 Query: 773 FISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVK 832 IS +GARKG+ DTA++T+++GYLTRRLV+V Q +VV DCGT GI ++P G + Sbjct: 183 TISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGVGVTE 242 Query: 833 EPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDF 892 ++GRV A DV + RN + + + + +RS +C + Sbjct: 243 RIFIQTLIGRVLANDVYM--GLRCIATRNQDIGIGLVNRFITSRAQPIYIRSPFTCRSTS 300 Query: 893 GVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQV 952 +C CYGR G+++ GEA+G+IA QSIGEPGTQLT+RTFH GG + AE ++ Sbjct: 301 WICQLCYGRSTTHGNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGIAE-HVRA 359 Query: 953 KNKGSIKLS 961 + G IK + Sbjct: 360 PSNGKIKFN 368 Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 99/269 (36%), Positives = 136/269 (50%), Gaps = 46/269 (17%) Query: 1097 AQYFLPGK-AIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAI 1155 A+Y L + A V G + GDTL E + DIT GLP+V + E R Sbjct: 1097 AKYHLATRGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRS------ 1150 Query: 1156 LAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPE 1215 + IS ++ K +G IT G P+E I QL + + R+ Sbjct: 1151 IDSIS--MNLEKRVEGWNER-ITGFLGI-PWEFFISA--QLTIVQS-RIS---------- 1193 Query: 1216 APHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-F 1274 +VN++Q VYR QGV+I+++HIE IVRQ+ K + G S+ F Sbjct: 1194 -----------------LVNKIQKVYRSQGVQIHNRHIETIVRQITSKVLVSEDGMSNVF 1236 Query: 1275 LEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTE 1334 E + R + R LE + Y LLGIT+ASL T+SFIS ASFQETTRVL + Sbjct: 1237 SPRELIGLLRAERIGRALEDD----ICYRAILLGITRASLNTQSFISEASFQETTRVLAK 1292 Query: 1335 AAVAGKRDELRGLKENVIVGRLIPAGTGY 1363 AA+ + D L+GLKENV++G +IP GTG+ Sbjct: 1293 AALRSRIDWLKGLKENVVLGGMIPVGTGF 1321 >UniRef50_P41606 DNA-directed RNA polymerase subunit beta'' n=45 Tax=Pinaceae RepID=RPOC2_PINTH Length = 1224 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 145/385 (37%), Positives = 214/385 (55%), Gaps = 32/385 (8%) Query: 586 GLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMV 645 LP+ N+ + K AI K+++ G+ T DQ+ +GF A + S+GIDD++ Sbjct: 19 NLPF--YNKVMDKTAIKKLISRLIDHFGMTYTSHILDQLKTSGFQQATDTAISLGIDDLL 76 Query: 646 IPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTET 705 K ++ +AE + + ++Q G V A E+ + I+IW A ++ + K M N Sbjct: 77 TAPSKGWLVQDAEQQGSVSEKQNHYGNVHAVEKLRQSIEIWYATSEYLRKEMNPNFSMTD 136 Query: 706 VINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFRE 765 N +++M+ SGARGS +Q+ QL GMRGLM+ P G II+ PI N RE Sbjct: 137 ------------PLNPVHVMSFSGARGSTSQVHQLVGMRGLMSDPQGQIIDLPIRRNLRE 184 Query: 766 GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPV 825 GL++ +Y IS +GARKG+ DTA++TA++GYLTRRLV+V Q +VV DCGT +GI ++P Sbjct: 185 GLSLTEYIISCYGARKGVVDTAVRTADAGYLTRRLVEVVQHIVVRRTDCGTIQGIFVSP- 243 Query: 826 IEGGDVKEPLRDR---------VLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENS 876 I G + RDR ++GRV A+DV + RN + + L Sbjct: 244 IRGRE-----RDRNEIVVRTQILIGRVLADDVYI--NRRCIATRNQDIGVGLANQLINLR 296 Query: 877 VDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFH 936 + +R+ +C + +C CYGR H+I GEA+G+IA QSIGEPGTQLT+RTFH Sbjct: 297 TQPIYIRTPFTCKSISRICQLCYGRSTTHSHLIELGEAVGIIAGQSIGEPGTQLTLRTFH 356 Query: 937 IGGAASRAAAESSIQVKNKGSIKLS 961 GG + AE I+ G I+ + Sbjct: 357 TGGVFTGDIAE-HIRAPFNGKIEFN 380 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 76/141 (53%), Positives = 96/141 (68%), Gaps = 5/141 (3%) Query: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLEGEQVEYSRVKIANR 1290 ++VN++Q VYR QGV+I DKHIEVIVRQM K I G+++ F GE + SR + +R Sbjct: 1040 HLVNQIQKVYRSQGVRIGDKHIEVIVRQMTSKVLISEDGTANVFSPGELIVLSRAQRMDR 1099 Query: 1291 ELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKEN 1350 LE Y LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKEN Sbjct: 1100 ALEE----AIYYQTMLLGITRASLNTQSFISEASFQETARVLAKAALQGRIDWLKGLKEN 1155 Query: 1351 VIVGRLIPAGTGYAYHQDRMR 1371 VI+G +IPAGTG H+ R Sbjct: 1156 VILGGMIPAGTGQHIHRSGKR 1176 >UniRef50_B1VKH5 DNA-directed RNA polymerase subunit beta'' n=3 Tax=Coniferales RepID=RPOC2_CRYJA Length = 1212 Score = 246 bits (629), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 132/366 (36%), Positives = 207/366 (56%), Gaps = 17/366 (4%) Query: 583 VPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGID 642 P +P+ N+ + K + ++ G+ T DQ+ GF A + S+GID Sbjct: 12 FPFEVPF--FNKGMDKFVMKHLIRRFVNQFGMTYTSHILDQLKILGFQQATDAAISLGID 69 Query: 643 DMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQ 702 D++ K +I +A+ + G V A E+ ++I++W A ++ + + M N + Sbjct: 70 DLLTTPSKAWLIQDAQQRGFASERHHDYGNVHAVEKLRQLIEVWHATSEYLRREMNPNFR 129 Query: 703 TETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITAN 762 +N ++MM+ SGARGS +Q+ QL GMRGLM+ P G I++ PI N Sbjct: 130 MTDPLN------------PVHMMSFSGARGSTSQVHQLVGMRGLMSDPRGKIVDLPIQGN 177 Query: 763 FREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMM 822 FREGL++ +Y IS +GARKG+ DT+++TA++GYLTRRLV+V Q LVV + DCGT +G+ + Sbjct: 178 FREGLSLTEYIISCYGARKGVVDTSIRTADAGYLTRRLVEVVQHLVVRKVDCGTIQGLFV 237 Query: 823 TPVIEGGDVKEPL-RDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVK 881 + + +K ++GRV A+DV G + RN + + + L V + Sbjct: 238 NLIQDRETIKNKFVLQTLIGRVLADDVYIHGRC--IATRNEDIGIKLANQLYYFQVQPIY 295 Query: 882 VRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAA 941 +R+ +C + + +C CYGR+ ++I GEA+G+IA QSIGEPGTQLT+RTFH GG Sbjct: 296 IRTPFTCKSIYWICQLCYGRNTTHSNLIELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVF 355 Query: 942 SRAAAE 947 + AE Sbjct: 356 TGDIAE 361 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 72/153 (47%), Positives = 100/153 (65%), Gaps = 19/153 (12%) Query: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-----------FLEGEQVE 1281 +V+E+Q VYR QGV+I+DKHIE+IVRQ+ K +V+ S+ FL GE V Sbjct: 984 LVDEIQKVYRSQGVQISDKHIEIIVRQITSKVLVVDVDRSENKNWENGLGSLFLPGELVG 1043 Query: 1282 YSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKR 1341 SRV+ +R LE Y LLG+T ASL T+SF+S ASFQET +VL ++A+ G+ Sbjct: 1044 LSRVQRMDRALEKR----INYRTILLGMTNASLNTQSFLSEASFQETAQVLAKSALQGRI 1099 Query: 1342 DELRGLKENVIVGRLIPAGTGYAYHQDRMRRRA 1374 D L+GLKENVI+G +IP GTG+ +R+ +R+ Sbjct: 1100 DWLKGLKENVILGGMIPVGTGF----NRLVKRS 1128 >UniRef50_B2Y1V7 DNA-directed RNA polymerase subunit beta'' n=3 Tax=Gnetopsida RepID=RPOC2_WELMI Length = 1297 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 127/353 (35%), Positives = 206/353 (58%), Gaps = 15/353 (4%) Query: 591 IVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKK 650 N+A+ + A+++++ G+ T DQ+ GF A + S+GIDD++ K Sbjct: 9 FYNKAMSRTALNELIRRLIDRFGMMCTSHILDQLKTLGFHQATDASFSLGIDDLLAAPSK 68 Query: 651 HEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRD 710 ++ E + + ++Q SG + E ++++ W ++ + + M Q Sbjct: 69 WWLVKEEDQQGFFSEKQNLSGNLHTVETLRQLMERWHTTSEYLKEEMYPKFQLTN----- 123 Query: 711 GQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVL 770 SFN +YMM+ SGARG+ +Q+ QL G+RGLM+ P G I++ PI NF+EGL++ Sbjct: 124 -------SFNPVYMMSFSGARGNKSQVHQLLGIRGLMSDPQGKIVDLPIQGNFQEGLSLT 176 Query: 771 QYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGD 830 +Y IS++GARKG+ DTA++TA++GYLTRRLV+V Q ++V + DCGT +GI ++P+ + Sbjct: 177 EYIISSYGARKGVVDTAVRTADAGYLTRRLVEVVQHIIVRKTDCGTTQGIFISPIQDRDR 236 Query: 831 VKEP-LRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCD 889 KE ++ GRV A+DV + RN + + + + A+ +R+ +C Sbjct: 237 SKENVFLQKITGRVLADDVYI--NRRCIATRNQDISAGLANQFKNLLIQAISIRTPFTCK 294 Query: 890 TDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAAS 942 + +C CYGR L+ ++I GEA+G+IA QSIGEPGTQLT+RTFH GG + Sbjct: 295 SLSWICQLCYGRSLSHNNLIELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFT 347 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 95/285 (33%), Positives = 127/285 (44%), Gaps = 59/285 (20%) Query: 1099 YFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAE 1158 Y KA + I+ GD L E + DIT GLP+V L EA+ P + Sbjct: 1046 YLATPKATIHGNFAEIINQGDPLITFFYERFKSSDITQGLPKVEQLAEAQS-NNPVV--- 1101 Query: 1159 ISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQ-----LNVFEGERVERGDVISDG 1213 EE W Q F G + + G Sbjct: 1102 -------------------------QNIEENFRIWNQDMTRTFGSFWGLFISTKITMEQG 1136 Query: 1214 PEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD 1273 +H V+++Q VY+ QGV I +KHIE+I+RQM + + + + Sbjct: 1137 -----------RIH-----FVDQIQKVYQSQGVHICEKHIELIIRQMTSRVLVSDDVIFN 1180 Query: 1274 -FLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVL 1332 FL GE + SR + +R + Y LLGITKAS T SFIS ASFQET RVL Sbjct: 1181 VFLPGELIGLSRAQRIDRAFDE----AIHYKTKLLGITKASFDTPSFISEASFQETARVL 1236 Query: 1333 TEAAVAGKRDELRGLKENVIVGRLIPAGTG----YAYHQDRMRRR 1373 +AA+ G+ D L+GLKENVI+ +IPAGTG Y+ R RR+ Sbjct: 1237 AKAAIQGRIDWLKGLKENVILSNIIPAGTGKKTNYSLFARRRRRK 1281 >UniRef50_Q32RY2 DNA-directed RNA polymerase subunit beta'' n=1 Tax=Staurastrum punctulatum RepID=RPOC2_STAPU Length = 1250 Score = 246 bits (627), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 137/380 (36%), Positives = 216/380 (56%), Gaps = 46/380 (12%) Query: 593 NQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHE 652 NQ + + A+ +++ LG T DQ+ GF +A ++G S+G+DD++ K Sbjct: 15 NQVMDRGAMRQLIGRLIIYLGSNCTSQILDQLKTLGFRHATQAGISLGVDDLITTPSKTW 74 Query: 653 IISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQ 712 +I +AE + +EQ++ G + A E+ V++ W ++ + + M + + +N Sbjct: 75 LIRDAEYQAYTSEEQYRRGSIHAVEKLRHVVETWHTTSEYLKREMTSHFRITDPLN---- 130 Query: 713 EEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQY 772 +++M+ SGARG+ +Q+ QL GMRGLMA P G+II+ PI +N REGL++ +Y Sbjct: 131 --------PVHIMSFSGARGNVSQVHQLVGMRGLMANPQGNIIDLPIQSNLREGLSLTEY 182 Query: 773 FISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIE----- 827 IS +GARKG+ DTA++TA++GYLTRRLV+V Q +V+ DC T++GI + + + Sbjct: 183 IISCYGARKGVVDTAVRTADAGYLTRRLVEVVQHVVIRNPDCETNQGIRLHSIRDRKTTR 242 Query: 828 --GGDVKEPLRDRVLGRVTAEDV-------------LKPGTADILV--PRNTLLHEQ--- 867 GG+ L++R++GRV A +V L P + LV P+ L Sbjct: 243 DAGGNSLLSLQERLIGRVLARNVFLGKRCIAIKNQDLAPDLVNSLVNFPKALLSPGSEGG 302 Query: 868 WCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPG 927 C++L VRS ++C + C CYG DL+ G+++ G AIG++A QSIGEPG Sbjct: 303 HCEIL---------VRSPLTCKSMPRACQKCYGWDLSCGNLVEIGAAIGIVAGQSIGEPG 353 Query: 928 TQLTMRTFHIGGAASRAAAE 947 TQLT+RTFH GG + AE Sbjct: 354 TQLTLRTFHTGGVFTGGVAE 373 Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 91/283 (32%), Positives = 122/283 (43%), Gaps = 51/283 (18%) Query: 1099 YFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAE 1158 Y +P I I+ GDTL + E DI GLP+ L EAR + I Sbjct: 864 YLIPTGGIAHTFHKQTINEGDTLVTLAYERLKASDIIQGLPKAEQLLEARVGNQVVINLY 923 Query: 1159 ISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPH 1218 + + + K + R I + D I R E ++E Sbjct: 924 MRFEILVAR-IKEQLRNYIGSLTQMDLMLSQISVNRASKALEYSQLE------------- 969 Query: 1219 DILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIV----------- 1267 V++VQ VY QGV I+DKH EVIVRQM K IV Sbjct: 970 --------------TVDQVQKVYLSQGVYISDKHFEVIVRQMSSKIAIVENTDFTAFSPK 1015 Query: 1268 ----NAGSSD----FLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESF 1319 A D F GE ++ S+ + NR L LLGIT+ASL SF Sbjct: 1016 AVIRTAFPYDVLGVFFPGEILDISKAQKMNRVLYKPLPCKPV----LLGITQASLNANSF 1071 Query: 1320 ISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362 +S ASF+ T VL+ +A+ G+ D L+GLKENV++ ++IPAGTG Sbjct: 1072 LSEASFERTITVLSRSALQGRMDWLKGLKENVLLSKMIPAGTG 1114 >UniRef50_A9XWC8 DNA-directed RNA polymerase (Fragment) n=5 Tax=malvids RepID=A9XWC8_9ROSI Length = 1281 Score = 244 bits (624), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 135/351 (38%), Positives = 204/351 (58%), Gaps = 18/351 (5%) Query: 612 LGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSG 671 G+ T DQ+ GF A + S+GIDD++ K ++ +AE + + +++ G Sbjct: 3 FGMAYTSHILDQVKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSSVLEKHHHYG 62 Query: 672 LVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGAR 731 V A E+ + I+IW A ++ + + M N + FN +++M+ SGAR Sbjct: 63 NVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTD------------PFNPVHIMSFSGAR 110 Query: 732 GSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTA 791 G+A+Q+ QL GMRGLM+ P G +I+ PI +N REGL++ +Y IS +GARKG+ DTA++T+ Sbjct: 111 GNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTS 170 Query: 792 NSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVL-GRVTAEDVLK 850 ++GYLTRRLV+V Q +VV DCGT GI M P + G + E + + L GRV A D+ Sbjct: 171 DAGYLTRRLVEVVQHIVVRRTDCGTLRGISMNP--QNGIMPERIFIQALIGRVLAADIYT 228 Query: 851 PGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIIN 910 GT I + RN + + + + +R+ +C T +C CYGR G ++ Sbjct: 229 -GTRCIAI-RNQDIGIEVVNRFITFRTQPIYIRTPFTCRTTSWICRLCYGRSPTHGDLVE 286 Query: 911 KGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLS 961 GEA+G+IA QSIGEPGTQLT+RTFH GG + AE ++ + G IK + Sbjct: 287 LGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAE-HVRAPSSGKIKFN 336 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 49/99 (49%), Positives = 65/99 (65%), Gaps = 5/99 (5%) Query: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLEGEQVEYSRVKIANRE 1291 +VN++Q VYR QGV+I+++HIE+IVRQ+ K + G S+ FL GE + R + A R Sbjct: 1187 LVNKIQKVYRSQGVQIHNRHIEMIVRQITSKVLVSEDGMSNIFLPGELIGLLRAERAGRV 1246 Query: 1292 LEANGKVGATYSRDLLGITKASLATESFISAASFQETTR 1330 L+ Y LLGIT+ASL T+SFIS ASFQET R Sbjct: 1247 LDE----AICYRAILLGITRASLNTQSFISEASFQETAR 1281 >UniRef50_P41556 DNA-directed RNA polymerase subunit A' n=22 Tax=Archaea RepID=RPOA1_METVS Length = 889 Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 244/882 (27%), Positives = 379/882 (42%), Gaps = 130/882 (14%) Query: 15 EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR--IFGPVKDYECLC 72 +E I L SP+ IR+ S ++ +T + + P GL R + P Sbjct: 8 KEIGDITFGLLSPEQIRTMSVAKIVTADTYDDDGY-PIDGGLMDTRLGVIDP-------- 58 Query: 73 GKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLL---- 128 G++C+ C V GHIEL+ HI F K + + + Sbjct: 59 ---------GLVCKSCSGRVGTCP---GHFGHIELSKSVIHIGFAKDIYKLLKAVCPHCG 106 Query: 129 DMPLRDIERVLYFESYVVIE--GGMTNLERQQILTEEQYLDALEEFGD-EFDAKMGAEAI 185 + + +I+R Y E + +E GG +L E G+ ++D K Sbjct: 107 KVTVTEIKRDEYLEKMLKLEEDGGDPWTLSDDLLKEAAKSSVCPSCGEVKYDIKYDKPTT 166 Query: 186 QALLKSMDLEQ-ECEQLREELNET-NSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLP 243 L +Q ++RE L + N + K + R+ +PE+M+LTVLP Sbjct: 167 YHQLDGKSQKQLTSSEVREILEKIPNEDCKLLGINSRVA----------RPEYMVLTVLP 216 Query: 244 VLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAV 303 V P +RP + L+ G + DL +I N RL+ ++ AP++I+ + +LQ + Sbjct: 217 VPPVTVRPSITLESGERSEDDLTHKLVDIIRINQRLEENINGGAPNLIIEDLWDLLQYHI 276 Query: 304 DALLDNGRRG----RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP 359 + DN G R +G RPL++LA +KGK+GRFR NL GKRV++S R+VI+ P Sbjct: 277 NTYFDNEAPGIPPARHRSG---RPLRTLAQRLKGKEGRFRHNLAGKRVNFSARTVISPDP 333 Query: 360 YLRLHQCGLPKKMALELFKP--------------FIYGKLELRGLATTIKAAKKMVEREE 405 L +++ G+P+ +A EL P G + G+ IK K +EE Sbjct: 334 RLSINEVGIPELIAKELTVPEKVTPYNIERIRKLIENGSDKHPGVNYVIKKVKTKDGKEE 393 Query: 406 AV----------VW--DILDEVIREHP------VLLNRAPTLHRLGIQAFEPVLIEGKAI 447 +W +I+D ++ E VL NR P+LHR+ I A + ++ + Sbjct: 394 EYKIKITDTNKKMWVENIVDGMVVERHLGDGDVVLYNRQPSLHRMSIMAHKVKVLPYRTF 453 Query: 448 QLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVV 507 + + VC YNADFDGD+M VHVP + EA+ EA LM+ +I+SP G PII D V Sbjct: 454 RHNLCVCPPYNADFDGDEMNVHVPQSEEARAEAETLMLVEKHIISPRYGGPIIGAIHDFV 513 Query: 508 LGLYYMTRD---------CVNAKGEGMVLTGPKEAER--LYRSGLASLHARVKVRITEYE 556 G Y +T + + G G L P E Y SG SL ++ Sbjct: 514 SGAYVLTSSNFIKDEALTLLKSSGFGSELGEPDFVENGIEYYSG-KSLFSKT------LP 566 Query: 557 KDANGELVAKTSLKDTTVGRAIL----WMIVPKG-LPYSIVNQALGKKAISKMLNTCYRI 611 K N + AK K R ++I+ G L ++++ +LNT + Sbjct: 567 KGLNLQYKAKVCKKCVQCKREECENDAFVIIRNGRLVQGVIDKNGFGAETGVVLNTIVKD 626 Query: 612 LGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIP----EKKHEIISEAEAEVAEIQEQ 667 G + F D G + GIDD IP ++ +++ +AE++V EI E+ Sbjct: 627 FGSEDARTFLDSATKMSVKSMMLRGFTTGIDDEDIPSEAIQEIQDLLDKAESDVQEIVER 686 Query: 668 FQSGLVTA-------GERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFN 720 ++ G + R ++ I A D K L E + + S Sbjct: 687 YEGGTLDPLPGRGIEESREAYIMQILGKARDDTGKVAEKYLSKENHAALMARTGARGSLL 746 Query: 721 SIYMMADSGARGSAAQIRQLAGMRG----------LMAKPDGSIIETPITANFREGLNVL 770 +I MMA S + S R G RG L AK G + + +++GL Sbjct: 747 NITMMAASVGQQSVRGGRVFRGYRGRTLPHFGEGSLDAKSHGF-----VRSCYKKGLAPT 801 Query: 771 QYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTED 812 +YF G R+GL D A++TA SGY+ RRLV+ QD+ D Sbjct: 802 EYFFHAMGGREGLVDQAVRTAQSGYMQRRLVNALQDIKAEYD 843 >UniRef50_P56764 DNA-directed RNA polymerase subunit beta'' n=192 Tax=Magnoliophyta RepID=RPOC2_ARATH Length = 1376 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 135/370 (36%), Positives = 211/370 (57%), Gaps = 16/370 (4%) Query: 593 NQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHE 652 N+ + AI ++++ G+ T DQ+ GF A + S+GIDD++ K Sbjct: 11 NKVIDGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGIDDLLTIPSKGW 70 Query: 653 IISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQ 712 ++ +AE + +++ G V A E+ + I+IW A ++ + + M N + Sbjct: 71 LVQDAEQQSWILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTD------- 123 Query: 713 EEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQY 772 FN ++MM+ SGARG+A+Q+ QL GMRGLM+ P G +I+ PI +N REGL++ +Y Sbjct: 124 -----PFNPVHMMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY 178 Query: 773 FISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVK 832 IS +GARKG+ DTA++T+++GYLTRRLV+V Q +VV DCGT GI ++P + + Sbjct: 179 IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNKNRMMS 238 Query: 833 EPLRDRVL-GRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTD 891 E + + L GRV A+D+ + + RN L + L ++ +R+ +C + Sbjct: 239 ERIFIQTLIGRVLADDIYI--GSRCVAFRNQDLGIGLVNRLITFGTQSISIRTPFTCRST 296 Query: 892 FGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQ 951 +C CYGR G ++ GEA+G+IA QSIGEPGTQLT+RTFH GG + AE ++ Sbjct: 297 SWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAE-HVR 355 Query: 952 VKNKGSIKLS 961 G IK + Sbjct: 356 APYNGKIKFN 365 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 94/247 (38%), Positives = 130/247 (52%), Gaps = 45/247 (18%) Query: 1118 GDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVI 1177 GDTL E + DIT GLP+V + E R ++ E K KG + I Sbjct: 1121 GDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISLNLE--------KRIKGWNK-CI 1171 Query: 1178 TPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEV 1237 T + G P+ +I +L + + R+ +VN++ Sbjct: 1172 TRILGI-PWGFLIGA--ELTIVQS-RIS---------------------------LVNKI 1200 Query: 1238 QDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLEGEQVEYSRVKIANRELEANG 1296 Q VYR QGV+I+++HIE+IVRQ+ K + G S+ FL GE + R + R LE Sbjct: 1201 QKVYRSQGVQIHNRHIEIIVRQITSKVLVSEEGMSNVFLPGELIGLLRAERTGRALEE-- 1258 Query: 1297 KVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRL 1356 Y LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV++G + Sbjct: 1259 --AICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGV 1316 Query: 1357 IPAGTGY 1363 IPAGTG+ Sbjct: 1317 IPAGTGF 1323 >UniRef50_Q85C71 DNA-directed RNA polymerase subunit beta'' n=1 Tax=Anthoceros formosae RepID=RPOC2_ANTFO Length = 1445 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 133/360 (36%), Positives = 205/360 (56%), Gaps = 22/360 (6%) Query: 593 NQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHE 652 N+ + AI + + G+ T DQ+ GF A + S+GIDD++ K Sbjct: 11 NKVIDGTAIKQFIGRLVAHFGITYTAHILDQLKTLGFQQATYAATSLGIDDLLTAPSKGW 70 Query: 653 IISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQ 712 +I +AE +++ + G V A E+ ++I+ W A ++ + + M N + +N Sbjct: 71 LIQDAEHHSYTLEKHHRYGNVHAVEKLRQLIETWYATSEYLKQEMNPNFRMTDPLN---- 126 Query: 713 EEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQY 772 ++MM+ SGARGSA+Q+ QL GMRGL++ P G II+ PI +NFREGL++ +Y Sbjct: 127 --------PVHMMSFSGARGSASQVHQLVGMRGLVSDPQGQIIDLPIKSNFREGLSLTEY 178 Query: 773 FISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVK 832 IS +GARKG+ DTA++T+++GYLTRRLV+V Q +VV + DC T GI + D K Sbjct: 179 IISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRKTDCNTFRGISLNST---EDKK 235 Query: 833 EPL----RDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSC 888 + L + +++GRV A+++ A L RN ++ + L + +RS ++C Sbjct: 236 KNLQIFTQQKLVGRVLADNLYI--NARCLAIRNQDINTNLIEKLITLKTPLISIRSPLTC 293 Query: 889 DTDFGVCAHCYGRDLAR-GHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAE 947 + +C CYG L G ++ GEA+G+IA QSIGEPGTQLT+RTFH GG + AE Sbjct: 294 KSMLWICQLCYGWSLTHYGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGDIAE 353 Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 101/261 (38%), Positives = 134/261 (51%), Gaps = 45/261 (17%) Query: 1103 GKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGI 1162 G A + G I GD L + E + DI GLP+V L EAR +I E +G Sbjct: 1161 GGATIHSHYGQIIKKGDVLITLVYERLKSGDIIQGLPKVEQLLEARPINSTSINLE-NGF 1219 Query: 1163 VSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILR 1222 ++ ++ +T GS W G ++S + Sbjct: 1220 ENWNRD--------MTKSLGS--------LW-------------GFLLSAKTTMNQSQIN 1250 Query: 1223 LRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLEGEQVE 1281 L V+++Q+VY+ QGV I+DKHIE++VRQM K + G ++ FL GE +E Sbjct: 1251 L----------VDQIQEVYQSQGVYISDKHIEIVVRQMTSKVLTLEDGMANGFLPGELIE 1300 Query: 1282 YSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKR 1341 SR + NR LE Y LLGITKASL T+SFIS ASFQETTRVL +AA+ G+ Sbjct: 1301 SSRAQRMNRVLEE----SVLYKPILLGITKASLNTQSFISEASFQETTRVLAKAALRGRI 1356 Query: 1342 DELRGLKENVIVGRLIPAGTG 1362 D L+GLKENVI G +I AGTG Sbjct: 1357 DWLKGLKENVIFGGVISAGTG 1377 >UniRef50_B7ZIB6 DNA-directed RNA polymerase n=1 Tax=Gnetum parvifolium RepID=B7ZIB6_GNEPA Length = 1317 Score = 239 bits (610), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 156/513 (30%), Positives = 262/513 (51%), Gaps = 33/513 (6%) Query: 591 IVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKK 650 N+ + A+ +++ G+ T DQ+ GF A + S+GIDD++ K Sbjct: 9 FYNKGMDTIAMKELIRRLIDRFGMTCTSHILDQLKTLGFYQATNASFSLGIDDLLAAPSK 68 Query: 651 HEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRD 710 ++ E + + ++Q G + E ++++ W ++ + + M Q +I+ Sbjct: 69 GWLVKEEDQQSFFSEKQNLYGNLHTVETLRQLMERWHITSEYLKEEMHPKFQ---IID-- 123 Query: 711 GQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVL 770 S N +YMM+ SGARG+ +QI QL G+RGLM+ P G I++ PI NF+EGL++ Sbjct: 124 -------SSNPVYMMSFSGARGNKSQIHQLLGIRGLMSDPQGKIVDLPIQGNFQEGLSLT 176 Query: 771 QYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGD 830 +Y IS++GARKG+ DTA++TAN+GYLTRRLV+V Q +VV + DCGT EGI+ +P+ Sbjct: 177 EYIISSYGARKGVVDTAVRTANAGYLTRRLVEVVQHIVVRKIDCGTTEGILFSPIQSQNQ 236 Query: 831 VKE-PLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCD 889 + E ++ GRV A +V + RN + + + + + +R+ +C Sbjct: 237 IDETAFLQKITGRVLATNVYI--NRRCIATRNQDISYRLANQFRNLLIQTISIRTPFTCK 294 Query: 890 TDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESS 949 + +C CYGR+L+ +++ GEA+G+IA QSIGEPGTQLT+RTFH GG + A + Sbjct: 295 SLSWICQFCYGRNLSHNNLVELGEAVGLIAGQSIGEPGTQLTLRTFHTGGVFTGNIA-GT 353 Query: 950 IQVKNKGSIKLSN--VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGD 1007 I+ G + ++ V G R +ID+ G + +P + L + Sbjct: 354 IRAPFNGRVHFNSNLVYPTRTFLGHPAYMCRKNLFLIIDDGGDKVDYSLIPPKSWLFVQN 413 Query: 1008 GEQVAGGETVANWDPHT--------MPVITEVSGFVRFTDMI-DGQTITRQTDELT-GLS 1057 + V + ++++ +T V +E+SG + ++ ++ TR LT G++ Sbjct: 414 YQYVESEQLISDFRTNTSFLREKALKHVYSELSGEMHWSALVWHAPKYTRGNVHLTLGVA 473 Query: 1058 SLVVLDSAERTAGGKDLRPALKIVDAQGNDVLI 1090 L L + G R L AQ D +I Sbjct: 474 HLWTL-----SGGIYKPRTVLFFPFAQDQDQII 501 Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 90/254 (35%), Positives = 115/254 (45%), Gaps = 55/254 (21%) Query: 1115 ISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRR 1174 I+ GD L E DIT GLP+V L E K P + Sbjct: 1057 INQGDPLITFFYERFKASDITQGLPKVEQLVETH-SKNPVV------------------- 1096 Query: 1175 LVITPVDGSDPYEEMIPKWRQ-----LNVFEGERVERGDVISDGPEAPHDILRLRGVHAV 1229 EE W Q L F G + ++ G +H Sbjct: 1097 ---------QNIEENFRIWNQDMTRTLGSFWGLFISAKIIMGQG-----------RIH-- 1134 Query: 1230 TRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLEGEQVEYSRVKIA 1288 V+++Q VY+ QGV I +KHIE+I+RQM + I + + F GE + SR + Sbjct: 1135 ---FVDQIQKVYQSQGVHICEKHIELIIRQMTSRVLISDDVMFNVFSPGELIGLSRAQRI 1191 Query: 1289 NRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLK 1348 +R + Y LLGITKAS T SFIS ASFQET RVL AA+ G+ D LRGLK Sbjct: 1192 DRAFDE----AIHYQTKLLGITKASFDTPSFISEASFQETARVLARAALQGRIDWLRGLK 1247 Query: 1349 ENVIVGRLIPAGTG 1362 ENVI+ +IPAGTG Sbjct: 1248 ENVILSNMIPAGTG 1261 >UniRef50_Q2EEW9 DNA-directed RNA polymerase subunit gamma n=2 Tax=Eukaryota RepID=RPOC1_HELSJ Length = 834 Score = 239 bits (609), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 127/334 (38%), Positives = 188/334 (56%), Gaps = 51/334 (15%) Query: 234 PEWMILTVLPVLPPDLRPLVPLDG---------------------GRFATSDLNDLYRRV 272 P WM L +PVLPP+LRP++ L G G SD+N YR + Sbjct: 368 PVWMTLRRIPVLPPNLRPILDLSGKNYQKTASSGTLLFMRDIMHEGNLFISDINTFYREI 427 Query: 273 INRNNRLKRLLDLAAPDIIVRNEKRM----------------LQEAVDALLD------NG 310 I N + + P + NE + +Q+++ +L D N Sbjct: 428 IIHNKKAFNFFS-SLPTLYYLNELNIEYVNSKLWLLKYYLMPIQKSITSLFDKNPETINN 486 Query: 311 RRGRAITG---SNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCG 367 + T N +P S+ D +KGK G+ R NLLGKRVDYSGRSVI P+L++++CG Sbjct: 487 FSNKKFTDLILDNVKP-TSILDSLKGKYGKIRFNLLGKRVDYSGRSVIISAPHLKIYECG 545 Query: 368 LPKKMALELFKPFI--YGKLELRGLATTIKAAKKMVEREEAVVW-DILDEVIREHPVLLN 424 +P +MAL L+ PF+ Y + + ++V +++++ L ++ HP+++N Sbjct: 546 IPYEMALTLYYPFLSEYFYKKNNNILKKNYNKSELVLYSKSLIFTKSLQSILLSHPIIIN 605 Query: 425 RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 484 RAPTLHRLGIQ+F P L KAI+LHPLVC A+NADFDGDQMA+HVP+T A+LEA LM Sbjct: 606 RAPTLHRLGIQSFLPKLTHSKAIELHPLVCPAFNADFDGDQMAIHVPITEIAKLEAIQLM 665 Query: 485 MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCV 518 S+ + +PA+G P+++P+QD++LG + T D + Sbjct: 666 ASSLFVYAPASGLPLLIPTQDIILGFNFYTNDLL 699 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 15/104 (14%) Query: 50 KPERDGLFCARIFGPVKDYECLCGKYKRLKHRGV-ICEKCGVEVTQTKVRRERMGHIELA 108 K LF +IFGP+ D+ C CGK K++ + +C KCG+E + +R +R G+I+L Sbjct: 68 KVNNKNLFSQQIFGPLIDFTCACGKKLNRKNKEINVCTKCGIEFLPSSIRSKRKGYIKLN 127 Query: 109 SPTAHIWF--------LKSLPSRIGLLLDMPLRDIERVLYFESY 144 H ++ +KS S + LLL+M + YF SY Sbjct: 128 YAMLHPFYIDYCEKLLMKSKKS-LHLLLNM-----DSFFYFPSY 165 >UniRef50_C7DHC4 DNA-directed RNA polymerase n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DHC4_9EURY Length = 844 Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 199/681 (29%), Positives = 310/681 (45%), Gaps = 128/681 (18%) Query: 233 KPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIV 292 +PEW +LT L V P ++RP + L+ G + DL ++ N RL++ +D AP II+ Sbjct: 205 RPEWFVLTALLVPPVNVRPSITLESGERSEDDLTHKLVEIMRINQRLEQDIDAGAPQIII 264 Query: 293 RNEKRMLQEAVDALLDNGRRGRAIT-GSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSG 351 + +LQ V +N G + + RPLK++A +KGK+GR R NL GKRV++S Sbjct: 265 DDLWELLQYHVTTYFNNETPGVPVARHRSTRPLKTIAQRLKGKEGRLRYNLSGKRVNFSA 324 Query: 352 RSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVE-REEAVVWD 410 R+VI+ L ++Q G+P KMA L P K I AAKK +E +E V + Sbjct: 325 RTVISSDSSLTVNQVGIPIKMAENLTVPVYVTKW-------NIDAAKKFLENKEYPTVVN 377 Query: 411 IL--------------DEVIRE-HP-------------VLLNRAPTLHRLGIQAFEPVLI 442 ++ +E+++E P VL NR PTLHRL I A ++ Sbjct: 378 VITKDGMRKRVSDLNREELLKEVEPGYVLERQLIDNDIVLFNRQPTLHRLSIMAHRVKVL 437 Query: 443 EGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVP 502 GK ++LH + YNADFDGD+M +HVP TLEAQ EAR LM +LSP +G+PII Sbjct: 438 PGKTLRLHVSIAYPYNADFDGDEMNLHVPQTLEAQAEARYLMQPKYLVLSPRDGQPIIFS 497 Query: 503 SQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGE 562 +D + G+Y +T+D NA Y S S V I E Sbjct: 498 EEDEIAGIYLLTKD--NA----------------YFSKEESCRMLSNVGIYE-------- 531 Query: 563 LVAKTSLKDTTVGRAILWMIVPKGLPYS------------------IVNQALGKKAISKM 604 + K + G+AI M++PKG+ + I++ + K +K+ Sbjct: 532 -LPKAERDGSYSGKAIFSMLLPKGINFESKASRGKVVIKNGVLEEGIIDDKIIGKEGAKL 590 Query: 605 LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEK----KHEIISEAEAE 660 + + G + T F ++ A G ++ + D E+ K EII +AE + Sbjct: 591 IRKLFVDYGPEVTEQFILRVNKLALRVAYLHGLTISVKDYYNSEQVNREKAEIIKDAETK 650 Query: 661 VAEIQEQFQSGLVTAGERYNKVIDI-------WAAANDRVSKAMMDNLQTETVINRDGQE 713 E+ + ++ G + Y K + + A + SKA+ L + Sbjct: 651 AYELMKSYKDGKLEPLPGYTKKQTLEMLLQAQLSQARNTASKALSKVL-----------D 699 Query: 714 EKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMA----KP----DGSII-------ETP 758 EK N+ Y+MA GARG+ + Q++ G + +P G ++ + P Sbjct: 700 EK----NNAYLMASIGARGNILNMVQMSMFLGQQSVRGGRPTRGYSGRVLPYFKKNDKNP 755 Query: 759 -----ITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDD 813 +T+ F +G+ Q F+ G+R +L TA SGY+ RRL++ QD V +D Sbjct: 756 EAKGFVTSCFFDGMEPRQMFMHAMGSRDSAMTKSLVTAVSGYMQRRLINAMQDFYVDKDL 815 Query: 814 CGTHEGIMMTPVIEGGDVKEP 834 + + GGD +P Sbjct: 816 SVRDASGALIQTLYGGDGVDP 836 >UniRef50_UPI0001C41F18 DNA-directed RNA polymerase subunit A'' RpoA1 n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41F18 Length = 926 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 251/950 (26%), Positives = 410/950 (43%), Gaps = 162/950 (17%) Query: 26 SPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVI- 84 SPD IR S + +P+T + + P +GL +R+ GVI Sbjct: 2 SPDQIREMSVVNITRPDTYDEDGY-PIENGLMDSRL--------------------GVID 40 Query: 85 ----CEKCGVEVTQTKVRRERMGHIELASPTAHIWF-------LKSLPSRIG-LLLDMPL 132 C CG + + + G I+LA P H+ F L+S + G +LLD Sbjct: 41 PSLKCRTCGEKGGECQ---GHFGMIDLARPVIHVGFGDDIHKILRSTCNECGRVLLDEEE 97 Query: 133 RDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAE----AIQAL 188 + E + E G E + L +E Y + + GAE I Sbjct: 98 IEEYTEKLNE---LQEAG----ESTEDLIKEVYKICKAKKAKDVCPHCGAEQEDIKIVKP 150 Query: 189 LKSMDLEQECEQLREELNETN-----------SETKRKKLTKRIKLLEAFVQSGN----K 233 + +++ +E ++ E L + N + R+KL +RI +A+V N + Sbjct: 151 IGIIEVRKEYDENGELLTDANGNPVTTDYDLTASEVREKL-ERIPDEDAYVLGVNPEVAR 209 Query: 234 PEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVR 293 PEWM+LTVLPV P +RP + LD G + DL ++ N RL +D AP +IV Sbjct: 210 PEWMVLTVLPVPPVTVRPSITLDTGERSEDDLTHKLVDILRINQRLIENMDAGAPQLIVE 269 Query: 294 NEKRMLQEAVDALLDNGRRG----RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDY 349 + ++LQ V DN G R +G RPLK+LA +KGK+GRFR NL GKRV++ Sbjct: 270 DLWQLLQYHVTTYFDNEASGVPPARHRSG---RPLKTLAQRLKGKEGRFRSNLSGKRVNF 326 Query: 350 SGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI--------------K 395 S R+VI+ P + +++ G+P+ +A E+ P + + L I K Sbjct: 327 SARTVISPDPNISINEVGVPEMIAKEVTVPTYVNEWNIEDLREAILNGPDAHPGANYVRK 386 Query: 396 AAKKMVEREEAVVWDILDEVIRE---------------HPVLLNRAPTLHRLGIQAFEPV 440 ++ + + V D E + E VL NR P+LHR+ + A E Sbjct: 387 YNDRIKDYNKVRVLDSNKETVAEMLTCGDIVMRHLKDGDIVLFNRQPSLHRMSMMAHEVR 446 Query: 441 LIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPII 500 ++ K +L+ VC YNADFDGD+M +HV T E++ EA++LM +ILSP G PII Sbjct: 447 VLPYKTFRLNLCVCPPYNADFDGDEMNMHVFQTDESRAEAKSLMRVQEHILSPRFGGPII 506 Query: 501 VPSQDVVLGLYYMTRDCVNAKGE--------GMVLTGPKEA-------ERLYRSGLASLH 545 D + G Y +TRD + +L P + E+ Y+ + + Sbjct: 507 GAIHDHISGAYLLTRDGFTVPEDDAFQMIRKSHLLKCPYDEYLKRDLDEKEYKQQIKEYN 566 Query: 546 ARVKVRITEYEKDANGELVAKTSLK-----------DTTVGRAI---LWMIVPKG-LPYS 590 ++K + ++ L+ ++L + + A ++++ G L + Sbjct: 567 EKLKRKHRDWTGKELFSLLLPSTLNMNYRAEICRKCEECMAEACEYDSYVVIKDGQLTHG 626 Query: 591 IVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKK 650 +++A K+L+ + G F D+ ++G + +D IPE+ Sbjct: 627 AIDEAAYGSFSGKILDNIVKEYGPAYAKEFLDRSTDLAICGIMKTGITTSTNDEEIPEEA 686 Query: 651 HEII----SEAEAEVAEIQEQFQSGLV------TAGERYN-KVIDIWAAANDRVSKAMMD 699 E+I AE +V ++ E ++ G + +A E +++ + A D Sbjct: 687 IEVIDAHLDNAEQKVDKLIETYEMGELQPLPGRSAEETLEMRIVQVLGEARDAAGDIAAG 746 Query: 700 NLQTETVINRDGQEEKQVSFNSIYMMADSGARGSA---AQIRQLAGM---------RGLM 747 L D + N +MA +GAR S AQI G RG + Sbjct: 747 YLTMGKQSPDDSYDHVMAVENHSVVMAKTGARASMLNLAQITACVGQQSVRGGRITRGYL 806 Query: 748 AKP--------DGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRR 799 A+P G+ + + ++++EGL+ +++F G R+GL DTA++TA SGY+ RR Sbjct: 807 ARPLPHFRKHELGARAKGFVHSSYKEGLDPVEFFFHAMGGREGLVDTAIRTAQSGYMQRR 866 Query: 800 LVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVL 849 LV+ +DL V D T + + G D +P + G+V D L Sbjct: 867 LVNALEDLNVRSDGLVTDNKNQVIQTVFGEDGIDPAKSD-FGKVANLDKL 915 >UniRef50_O27125 DNA-directed RNA polymerase subunit A' n=5 Tax=Archaea RepID=RPOA1_METTH Length = 870 Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 243/886 (27%), Positives = 387/886 (43%), Gaps = 165/886 (18%) Query: 20 IKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLK 79 I L SP+ IR S ++ P+T + + P +GL R+ Sbjct: 11 INFGLMSPEDIRKMSVTQIVTPDTYDEDGY-PIENGLMDPRL------------------ 51 Query: 80 HRGVI-----CEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRD 134 GVI C CG + + G I LA P H+ F + I +L R Sbjct: 52 --GVIDPSLRCRTCGAKGGECP---GHFGSINLARPVIHVGFADT----IHKILRSTCRK 102 Query: 135 IERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDL 194 RVL E+ + RQ+IL + ++L E + AEA + + Sbjct: 103 CGRVLLTETEI-------EEYRQRILDAMEKEESLTPIIKE----IYAEARRDKCPHCEE 151 Query: 195 EQECEQLREELNETNSETK------RKKLTKRIKLLEAFVQSGN----KPEWMILTVLPV 244 EQE +L + ++ + K R++L +RI +A + N +PEWM+LTVLPV Sbjct: 152 EQEEIKLDKPVSIVEGDYKLTPSEVRERL-ERISDDDALILGVNPEVARPEWMVLTVLPV 210 Query: 245 LPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVD 304 P +RP + L+ G + DL ++ N RLK ++ AP +IV + +LQ V Sbjct: 211 PPVTVRPSITLETGERSEDDLTHKLVDILRINQRLKENMEAGAPQLIVEDLWELLQYHVT 270 Query: 305 ALLDNGRRG----RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360 DN G R +G RPLK+LA +KGK+GRFR NL GKRV++S R+VI+ P Sbjct: 271 TYFDNEASGVPPARHRSG---RPLKTLAQRLKGKEGRFRSNLSGKRVNFSARTVISPDPN 327 Query: 361 LRLHQCGLPKKMALELFKPFIYGKLELR--------------GLATTIKAAKKMV----E 402 + +++ G+P+ +A E+ P + + G I+ + + E Sbjct: 328 ISINEVGVPEIIAREVTVPVYVTEWNIDRMREYIENGPDVHPGANYVIRPDGRKIRIYNE 387 Query: 403 REEAVVWDILDEVIREHP------VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAA 456 +E V+ ++ I E VL NR P+LHR+ + A + ++ K +L+ VC Sbjct: 388 TKEVVLENLKPGYIVERHLKDGDIVLFNRQPSLHRMSMMAHQVRVLPYKTFRLNLCVCPP 447 Query: 457 YNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRD 516 YNADFDGD+M +HV T E++ EA+ LM +ILSP G PII D + G Y +TR Sbjct: 448 YNADFDGDEMNMHVFQTEESRAEAKTLMRVQEHILSPRFGGPIIGGIHDHISGAYLLTR- 506 Query: 517 CVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKD--TTV 574 + V + K + L ++GL +R +D G+ + L D V Sbjct: 507 ------KSAVFSEEKVFQILKKAGLPLPDSR--------GRDWTGKEIFSMVLPDDLNMV 552 Query: 575 GRAIL----------------WMIVPKG-LPYSIVNQALGKKAISKMLNTCYRILGLKPT 617 RA + ++++ G L ++++ K+L+ + G Sbjct: 553 YRAEVCRKCEECLEMECENDAYVVIENGQLISGVIDEKAYGAFAGKILDHIVKEYGTDAA 612 Query: 618 VIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIIS----EAEAEVAEIQEQFQSGLV 673 F D A +G + +D IPE+ E I AEA V ++ E +++G + Sbjct: 613 REFLDSATKLAIAGIMHAGFTTSTNDEEIPEEARERIEAHLRNAEARVDQLIEAYENGEL 672 Query: 674 T--AGERYN-----KVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMA 726 G K++ + A D+ + E+ + D N +MA Sbjct: 673 EPLPGRSLEETLEMKIMQVLGEARDKSGEI------AESYFDMDE--------NHAVIMA 718 Query: 727 DSGARGSAAQIRQLAGMRGLMAKPDGSIIE------TP--------------ITANFREG 766 +GARGS + Q+ G + G I P + ++++EG Sbjct: 719 LTGARGSMLNLTQITACVGQQSVRGGRISRGYDNRTLPHFKKGELGAKSRGFVHSSYKEG 778 Query: 767 LNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTED 812 L+ +++F G R+GL DTA++TA SGY+ RRLV+ QDL V E+ Sbjct: 779 LDPIEFFFHAMGGREGLVDTAIRTAQSGYMQRRLVNALQDLTVDEN 824 >UniRef50_Q01923 DNA-directed RNA polymerase subunit beta'' n=469 Tax=Spermatophyta RepID=RPOC2_SORBI Length = 1520 Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 131/375 (34%), Positives = 212/375 (56%), Gaps = 23/375 (6%) Query: 593 NQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHE 652 N+ + A+ ++++ G+ T DQI GF A + S+GI+D++ K Sbjct: 11 NKEIDGTAMKRLISRLIDHFGMGYTSHILDQIKTLGFHQATTTSISLGIEDLLTIPSKGW 70 Query: 653 IISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQ 712 ++ +AE + +++ + G V A E+ + ++IW A ++ + + M N + Sbjct: 71 LVQDAEQQSFLLEKHYYYGAVHAVEKLRQSVEIWYATSEYLKQEMNSNFRITD------- 123 Query: 713 EEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQY 772 N +Y+M+ SGARG+A+Q+ QL GMRGLMA P G +I+ PI +N REGL++ +Y Sbjct: 124 -----PSNPVYLMSFSGARGNASQVHQLVGMRGLMADPQGQMIDLPIQSNLREGLSLTEY 178 Query: 773 FISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVK 832 IS +GARKG+ DTA++TA++GYLTRRLV+V Q ++V DCGT +GI ++P + G + Sbjct: 179 IISCYGARKGVVDTAVRTADAGYLTRRLVEVVQHIIVRRRDCGTIQGISVSP--QNGMTE 236 Query: 833 EPLRDRVLGRVTAEDVLKPGTADILVPRNTL----LHEQWCDLLEENSVDA--VKVRSVV 886 + ++GRV A+D+ + RN L ++ A + +R+ Sbjct: 237 KLFVQTLIGRVLADDIYIGSRC--IASRNQDIGIGLVNRFITAFRAQPFRAQPIYIRTPF 294 Query: 887 SCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAA 946 +C + +C CYGR G ++ GEA+G+IA QSIGEPGTQLT+RTFH GG + A Sbjct: 295 TCRSTSWICQLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTA 354 Query: 947 ESSIQVKNKGSIKLS 961 + I+ + G I+ + Sbjct: 355 D-LIRSPSNGKIQFN 368 Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 98/267 (36%), Positives = 132/267 (49%), Gaps = 59/267 (22%) Query: 1105 AIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVS 1164 A V G + GD L E + DIT GLP+V +FEAR Sbjct: 1243 ATVHGHYGKILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR---------------- 1286 Query: 1165 FGKETKGKRRLVITPVDGSDP-YEEMIPKWRQLNVFEGERVER------GDVISDGPEAP 1217 +D P E I W ER+ R G +I G E Sbjct: 1287 --------------SIDSLSPNLERRIEDW-------NERIPRILGVPWGFLI--GAELT 1323 Query: 1218 HDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLE 1276 R+ +VN++Q VYR QGV+I+++HIE+I+RQ+ K + G S+ FL Sbjct: 1324 IAQSRIS--------LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLP 1375 Query: 1277 GEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAA 1336 GE + R + A R L+ + Y LLGIT+ASL T+SFIS ASFQET RVL +AA Sbjct: 1376 GELIGLLRAERAGRALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAA 1431 Query: 1337 VAGKRDELRGLKENVIVGRLIPAGTGY 1363 + G+ D L+GLKENV++G +IP GTG+ Sbjct: 1432 LRGRIDWLKGLKENVVLGGIIPVGTGF 1458 >UniRef50_B0EG66 DNA-directed RNA polymerase n=2 Tax=Entamoeba RepID=B0EG66_ENTDI Length = 1379 Score = 236 bits (603), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 235/868 (27%), Positives = 378/868 (43%), Gaps = 176/868 (20%) Query: 234 PEWMILTVLPVLPPDLRPLVPLDGGRFAT-SDLNDLYRRVINRNNRLKRLLDLAAPDIIV 292 PE MILT +PV P +RP V +DGG + DL + ++ N+R+K ++ A Sbjct: 264 PENMILTSVPVPPIAIRPSVAMDGGNASNEDDLTTQLKEIMECNDRIKEMIKRGASPYQY 323 Query: 293 RNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGR 352 + L AV +++ G G +PL+S+ +KGK GRFR NLLGKRVD+SGR Sbjct: 324 YDSWDQLTIAVSMFINSDLPGCDDKG---KPLRSICQRLKGKHGRFRGNLLGKRVDFSGR 380 Query: 353 SVITVGPYLRLHQCGLPKKMALELFKP--------------FIYGKLELRGLATTIKAAK 398 +VI+ P L + Q G+PK MA++L P I G G + I Sbjct: 381 TVISPDPNLDIEQIGVPKLMAIKLTYPERVTKHNIDKLRQLVINGSNIYPGCNSIIGGTD 440 Query: 399 KM-------VEREEAVVWDI-LDEVIREH-----PVLLNRAPTLHRLGIQAFEPVLIEGK 445 + +E E D+ + +++ H VL NR P+LHR+ I + ++ + Sbjct: 441 GLRRSMCIKLEMREKFAKDLKIGDIVERHLEDNDIVLFNRQPSLHRISIMCHKAKILPWR 500 Query: 446 AIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQD 505 ++ + VC YNADFDGD+M +HVP T EA+ E LM S N+ +P G+ II +QD Sbjct: 501 TLRFNECVCTPYNADFDGDEMNLHVPQTEEARAECLMLMHSAKNLQTPRTGQMIIAETQD 560 Query: 506 VVLGLYYMTRDCVNAKGEGMV-------------------LTGPKE---AERLYRSGLA- 542 + Y +T + E M+ PK+ ++LY GLA Sbjct: 561 FLTTSYLLTSKDFVIEEEDMMQWACWFHNAGTEIDLPTPAYLKPKKLWTGKQLY--GLAL 618 Query: 543 --SLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKG---------LPYSI 591 + H V + + D +L +K G+ WM V G L I Sbjct: 619 KPNKHEGVNISL-----DVPSKLYSKE-------GK---WMCVKDGWICFKNSQLLCGQI 663 Query: 592 VNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMV----IP 647 +G + + + R G + I + G S+GI D+ + Sbjct: 664 EKSIIGSGNKTGLFHLILRDYGTLESAKIMAHISRFCARFLGDYGFSIGISDVTPSADLT 723 Query: 648 EKKHEIISEAEAEVAEIQEQFQSGL--VTAGERYNKVIDIWAAANDRVSKAMMDNLQTET 705 + K E++SE + + E ++SG V AG + ++ +A+++N +E Sbjct: 724 QMKEELVSEGYKKCDQFIEDYKSGKQEVQAG-----------STPEQTLEALLNNELSE- 771 Query: 706 VINRDGQE--EKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIE------- 756 + R G+ E+ S NS +MA SG++GS I Q+ G G + + Sbjct: 772 IRERAGKRCIEELKSDNSPLVMALSGSKGSVINISQMIACVGQQTVNGGRVSDGFISRSL 831 Query: 757 --------TP-----ITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDV 803 TP + +F GLN ++F T G R+GL D+A+KTA +GY+ RRL+ Sbjct: 832 PHFALHSRTPQAKGFVKNSFFTGLNATEFFFHTMGGREGLVDSAVKTAETGYMQRRLMKA 891 Query: 804 AQDLVVTEDDCGTHEGIMMTPVIE---GGDVKEPLR----------DRVLGRVTA----- 845 +DL V D GT +T VIE G D +PL+ + VL + Sbjct: 892 LEDLHVHYD--GTVRSASLT-VIEFKYGDDGLDPLKVESDKYPINLESVLSNLQQNQKPD 948 Query: 846 EDVLKPGTAD----ILVPRNTLLHEQWCDLLE----ENSVDAVKVRSVVSCDT-DFGVC- 895 ++ + P D ++ + ++ E W LE E + +++ + + G+C Sbjct: 949 DEYITPENFDKEYNAIISQTKIVSELWKQQLETFLKEKKEEMIEIYNRYDQENAQHGLCG 1008 Query: 896 ----------AHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAA 945 + C + L + G +G +A QS+GEP TQ+ ++TFH G AS Sbjct: 1009 ITIQTLKEFISICQKKGLRS--VCEAGTPVGALAGQSMGEPSTQMVLKTFHFAGVASMNI 1066 Query: 946 AESSIQVKNKGSIKLSNVKSVVNSSGKL 973 A + + +K ++N+S K+ Sbjct: 1067 A-----------LGVPRIKEIINASKKI 1083 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 2/64 (3%) Query: 1301 TYSRDLLGITKASLAT--ESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIP 1358 T+ +LGIT+ ++ +S + ASF+ T L +AAV ++DE++G+ E++IVG + Sbjct: 1294 TFKGVILGITRYGISKMKDSVFTFASFERTNDHLFDAAVHSRKDEIKGVSESIIVGNQVG 1353 Query: 1359 AGTG 1362 GTG Sbjct: 1354 LGTG 1357 >UniRef50_B7ZIF3 DNA-directed RNA polymerase n=1 Tax=Ephedra equisetina RepID=B7ZIF3_EPHEU Length = 1231 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 125/354 (35%), Positives = 205/354 (57%), Gaps = 24/354 (6%) Query: 593 NQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHE 652 N+ + A+ +++ +LG+ T DQ+ + GF A + S+ IDD++ K Sbjct: 11 NKVMDITAMKELIQKLIDLLGMTCTSHILDQLKFLGFHQATEASFSLAIDDLLAVPSKGW 70 Query: 653 IISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQ 712 ++ E + + ++Q G + E ++++ W ++ + + M +I Sbjct: 71 LVKEEDQQAFYSEKQNILGNLHTVETLRQLMERWHTTSEFLKEEMHPKFH---IIE---- 123 Query: 713 EEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQY 772 N +YMM+ SGARG+ +Q+ QL GMRGLM+ P G I++ PI NF+EGL++ +Y Sbjct: 124 -----PLNPVYMMSFSGARGNKSQVHQLLGMRGLMSDPQGKIVDLPIQGNFQEGLSLTEY 178 Query: 773 FISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVK 832 IS++GARKG+ DTA++TA++GY+TRRLV+V Q +VV + DCG+ +GI +P + G + Sbjct: 179 IISSYGARKGVVDTAIRTADAGYITRRLVEVVQHIVVRKIDCGSTQGIFYSPHTKIGKIN 238 Query: 833 EPLRDRVLGRVTAEDVLKPGTADILVPRNTL----LHEQWCDLLEENSVDAVKVRSVVSC 888 ++++GRV A+ V + RN L +Q+ L SV ++ +RS +C Sbjct: 239 --FLNKIMGRVLADHVY--INKRCVATRNQEISAGLFKQFVSL----SVQSISIRSPFTC 290 Query: 889 DTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAAS 942 + +C CYG+ L+ ++I GEA+G+IA QSIGEPGTQLT+RTFH GG + Sbjct: 291 KSLSWICQLCYGQSLSHNNLIELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFT 344 Score = 120 bits (300), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 86/254 (33%), Positives = 120/254 (47%), Gaps = 55/254 (21%) Query: 1115 ISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRR 1174 I+ G++L E + DIT GLP+V EA K P + Sbjct: 997 INQGNSLITYLYERFQSSDITRGLPKVEQFLEAH-SKNPVV------------------- 1036 Query: 1175 LVITPVDGSDPYEEMIPKWRQ-----LNVFEGERVERGDVISDGPEAPHDILRLRGVHAV 1229 E KW Q L F G + ++ G +H Sbjct: 1037 ---------QSLENSFRKWNQDMTITLGSFWGLVISTKITLTQGQ-----------IH-- 1074 Query: 1230 TRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIV-NAGSSDFLEGEQVEYSRVKIA 1288 +VN++Q VY+ QGV I +KH+E+I++QM + + + + FL GE V +SR + Sbjct: 1075 ---LVNQIQKVYQSQGVHICEKHLELIIQQMTSRVLVSKDVMLNVFLPGELVFFSRAQKL 1131 Query: 1289 NRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLK 1348 +R + Y +LGITK+S T SFIS ASFQETTRVL +AA G+ D L+GLK Sbjct: 1132 DRAFDE----VIHYQTKILGITKSSFETTSFISEASFQETTRVLAKAAFQGRIDWLKGLK 1187 Query: 1349 ENVIVGRLIPAGTG 1362 EN+I+ IPAGTG Sbjct: 1188 ENLILSSKIPAGTG 1201 >UniRef50_C7P941 DNA-directed RNA polymerase n=26 Tax=root RepID=C7P941_METFA Length = 891 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 252/933 (27%), Positives = 398/933 (42%), Gaps = 186/933 (19%) Query: 15 EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR--IFGPVKDYECLC 72 +E I L SPD IR S ++ P+T + + P GL R + P Sbjct: 10 KEIGEIMFGLLSPDYIRQMSVAKIVTPDTYDEDGY-PIDGGLMDTRLGVIDP-------- 60 Query: 73 GKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPL 132 G++C+ CG + + GHIELA P HI F K+ I +L Sbjct: 61 ---------GLVCKTCGGRIGECP---GHFGHIELAKPVIHIGFAKT----IYKILKAVC 104 Query: 133 RDIERVLYFESYVVIEGGMTNLERQQILTEEQYLD--------ALEEFGDEFDAKMGAEA 184 RV ++ +R++IL + + L+ EE E Sbjct: 105 PHCGRV-----------AISETKRKEILEKMEKLERDGGNKWEVCEEVYKEASKVTICPH 153 Query: 185 IQALLKSMDLEQECEQLREELNETNSETKR--KKLTKRIKLLEAFVQSGN----KPEWMI 238 + + E+ R + NE + T +++ ++I + + N +PEWM+ Sbjct: 154 CGEIKYDIKFEKPTTYYRIDGNEEKTLTPSDVREILEKIPDEDCILLGLNPEVARPEWMV 213 Query: 239 LTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRM 298 LTVLPV P +RP + L+ G + DL +I NNRL+ ++ AP++I+ + + Sbjct: 214 LTVLPVPPVTVRPSITLETGERSEDDLTHKLVDIIRINNRLEENIEGGAPNLIIEDLWNL 273 Query: 299 LQEAVDALLDNGRRG-RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITV 357 LQ V+ DN G + RPLK+LA +KGK+GRFR NL GKRV++S R+VI+ Sbjct: 274 LQYHVNTYFDNEAPGIPPAKHRSGRPLKTLAQRLKGKEGRFRYNLAGKRVNFSSRTVISP 333 Query: 358 GPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAA-----------KKM-----V 401 P L +++ G+P+ +A EL P K + + ++ +KM V Sbjct: 334 DPCLSINEVGVPEIVAKELTVPEKVTKYNIERIRQLLRNGSEKHPGVNYVIRKMIGRDGV 393 Query: 402 EREEAV--------VW-------DILDEVIREHPVLL-NRAPTLHRLGIQAFEPVLIEGK 445 E+E V W DI++ + + ++L NR P+LHR+ I A ++ + Sbjct: 394 EQEYKVKITESNKDFWAENIKEGDIVERHLMDGDIVLYNRQPSLHRMSIMAHRVRVLPYR 453 Query: 446 AIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQD 505 + + VC YNADFDGD+M +HVP + EA+ EA ALM+ +ILSP G PII D Sbjct: 454 TFRHNLCVCPPYNADFDGDEMNLHVPQSEEARAEAEALMLVEKHILSPRFGGPIIGAIHD 513 Query: 506 VVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVA 565 + G Y +T EA + RSG +K + E +K NG + Sbjct: 514 FISGAYLLTSSYFTK----------DEATLILRSG------GIKDELWEPDKVENGVPLY 557 Query: 566 KTSLKDTTVGRAILWMIVPKGL--------------------PYS----IVNQALGKKAI 601 G+ I +PKGL PY I + L K I Sbjct: 558 S--------GKKIFSKALPKGLNLRYKAKICRKCDECKKEECPYDAYVVIKDGELIKGVI 609 Query: 602 SK---------MLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKK-- 650 K +L+T + G + F D G + GIDD +PE+ Sbjct: 610 DKNGYGAEAGLILHTIVKEFGPEAGRKFLDSATKMAIRAVMLRGFTTGIDDEDLPEEALK 669 Query: 651 --HEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVIN 708 ++++EAE +V EI E+++ G + + + +A ++N+ E Sbjct: 670 EIEKVLNEAEEKVKEIIEKYERGELEL---------LPGLDLEESREAYINNVLREARDK 720 Query: 709 RDGQEEKQVSF-NSIYMMADSGARGSAAQIRQLA---------------GMRG------- 745 EK + N +MA +GARG+ + Q+A G RG Sbjct: 721 AGEIAEKYLGLDNHAVIMAVTGARGNILNLTQMAACLGQQSVRGRRIFRGYRGRVLPHFE 780 Query: 746 ---LMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVD 802 L AK G + +++++GL+ ++F G R+GL D A++TA SGY+ RRL++ Sbjct: 781 KGSLDAKSHGF-----VRSSYKKGLSPTEFFFHAMGGREGLVDQAVRTAQSGYMQRRLIN 835 Query: 803 VAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPL 835 QDL D +M + G D +P+ Sbjct: 836 ALQDLKTEFDGTVRDSRGVMIQFMYGEDGVDPM 868 >UniRef50_Q9HM79 DNA-directed RNA polymerase subunit A' n=16 Tax=Euryarchaeota RepID=RPOA1_HALSA Length = 971 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 190/642 (29%), Positives = 300/642 (46%), Gaps = 94/642 (14%) Query: 232 NKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDII 291 ++PEWMILTVLPV P RP + LD G+ + DL +I N R + AP +I Sbjct: 274 SRPEWMILTVLPVPPVTARPSITLDNGQRSEDDLTHKLVDIIRINQRFMENREAGAPQLI 333 Query: 292 VRNEKRMLQEAVDALLDNGRRG----RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRV 347 + + +LQ V +DN G R +G RPLK+L+ +KGK+GRFR +L GKRV Sbjct: 334 IEDLWELLQYHVTTFMDNEISGTPPARHRSG---RPLKTLSQRLKGKEGRFRGSLSGKRV 390 Query: 348 DYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLEL-------------------- 387 ++S R+VI+ P L L++ G+P ++A E+ + + + L Sbjct: 391 NFSARTVISPDPTLSLNEVGVPDRVATEMTQTMVVNEQNLERARRYVRNGPEGHPGANYV 450 Query: 388 -----RGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLI 442 R + T K +++ ER E W++ +I ++ NR P+LHR+ I A E V++ Sbjct: 451 TRPDGRRVRVTEKVCEELAERVEPG-WEVQRHLIDGDIIIFNRQPSLHRMSIMAHEVVVM 509 Query: 443 EGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVP 502 K +L+ +VC YNADFDGD+M +H EA+ EAR LM ILSP GE II Sbjct: 510 PYKTFRLNTVVCPPYNADFDGDEMNMHALQNEEARAEARVLMRVQEQILSPRFGENIIGA 569 Query: 503 SQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDA--N 560 QD + G Y +T D N + + ++ L ++ + L A T+ + D Sbjct: 570 IQDHISGTYLLTND--NPR-----FNETQASDLLRQTRIDELPAAAG---TDEDGDQYWT 619 Query: 561 GELVAKTSLKDT-------TVGRAILWMIVPKG--LPYSIVNQALGKKAISKMLNTCYRI 611 G + L D T G + ++ G L +I + +G+ S++++T ++ Sbjct: 620 GHQIFSELLPDDLSLEFTGTTGDTV---VIEDGQLLEGTIADDEVGEYG-SEIVDTITKV 675 Query: 612 LGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIP----EKKHEIISEAEAEVAEIQEQ 667 G IF +++ G S+GIDD + E+ E I A V E+ E Sbjct: 676 HGNTRARIFINEVASLAMRSIMHFGFSIGIDDETVSTEARERIDEAIQSAYDRVQELIET 735 Query: 668 FQSGLVTA--GERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMM 725 +++G + + G ++ +++ +M L D EE N +M Sbjct: 736 YENGDLESLPGRTVDETLEM----------KIMQTLGKARDSAGDVAEENFDEDNPAVVM 785 Query: 726 ADSGARGSAAQIRQLAGMRGLMA------------------KPDGSIIETP--ITANFRE 765 A+SGARGS + Q+AG G A P+ E + ++ Sbjct: 786 ANSGARGSMLNLTQMAGCVGQQAVRGERINRGYEDRTLSHFAPNDLSSEAHGFVENSYTS 845 Query: 766 GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDL 807 GL ++F G R+GL DTA++T+ SGYL RRL++ +L Sbjct: 846 GLTPKEFFFHAMGGREGLVDTAVRTSKSGYLQRRLINALSEL 887 >UniRef50_A9XWB0 DNA-directed RNA polymerase (Fragment) n=3 Tax=fabids RepID=A9XWB0_9FABA Length = 1313 Score = 233 bits (595), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 130/342 (38%), Positives = 198/342 (57%), Gaps = 20/342 (5%) Query: 622 DQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNK 681 DQ+ GF A + S+GIDD++ K ++ +AE + +++ G V A E+ + Sbjct: 8 DQVKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVYAVEKLRQ 67 Query: 682 VIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLA 741 I+IW A ++ + + M N + FN +++M+ SGARG+A+Q+ QL Sbjct: 68 SIEIWYATSEYLRQEMNPNFRMTD------------PFNPVHIMSFSGARGNASQVHQLV 115 Query: 742 GMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLV 801 GMRGLM+ P G +I+ PI +N REGL++ +Y IS +GARKG+ DTA++T+++GYLTRRLV Sbjct: 116 GMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLV 175 Query: 802 DVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVL-GRVTAEDV-LKPGTADILVP 859 +V Q +VV DCGT GI +T G + E + + L GRV A+D+ + P I Sbjct: 176 EVVQHIVVRRTDCGTIRGISVT--FRNGMMPERIFIQTLIGRVLADDIYIGPRCIAI--- 230 Query: 860 RNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIA 919 RN + + + +R+ +C + +C CYGR G ++ GEA+G+IA Sbjct: 231 RNQDIGIGLVNRFITFQTQPIYIRTPFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIA 290 Query: 920 AQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLS 961 QSIGEPGTQLT+RTFH GG + AE ++ + G IK + Sbjct: 291 GQSIGEPGTQLTLRTFHTGGVFTGGTAE-HVRAPSNGKIKFN 331 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 54/109 (49%), Positives = 71/109 (65%), Gaps = 5/109 (4%) Query: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLEGEQVEYSRVKIANRE 1291 +VN++Q VYR QGV+I+++HIE+IVRQ+ K + G S+ FL GE + R + R Sbjct: 1208 LVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLLRAERTGRA 1267 Query: 1292 LEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGK 1340 LE Y LLGITK SL T+SFIS ASFQET RVL +AA+ G+ Sbjct: 1268 LEE----AICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGR 1312 >UniRef50_P11512 DNA-directed RNA polymerase subunit A' n=23 Tax=Thermoprotei RepID=RPOA1_SULAC Length = 880 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 229/836 (27%), Positives = 358/836 (42%), Gaps = 114/836 (13%) Query: 82 GVICEKCGVEVTQTKVRRERMGHIELASPTAHIW-------FLKSLPSRIGLLLDMPLRD 134 G C CG + GHIEL P HI FL+S R G + + +D Sbjct: 55 GQKCPVCGNTLAGCP---GHFGHIELIKPVIHIGYVKHIYDFLRSTCWRCGRI-KIKEQD 110 Query: 135 IERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDL 194 +ER Y Y I+ + R+ + +Y+ + E + L K + Sbjct: 111 LER--YKRIYNAIKLRWPSAARRLV----EYIKKISIKNLECPHCGEKQFKIKLEKPYNF 164 Query: 195 EQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVP 254 +E +L+ + + +++ L + ++PEWMILTVLPV P +RP + Sbjct: 165 NEERNGSIVKLSPSEIRDRLERIPDSDVELLGYDPKSSRPEWMILTVLPVPPITIRPSIT 224 Query: 255 LDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGR 314 ++ G A DL +I N RLK ++ AP +I+ + +LQ V DN G Sbjct: 225 IESGIRAEDDLTHKLVDIIRLNERLKESIEAGAPQLIIEDLWDLLQYHVATYFDNEIPGL 284 Query: 315 AITGSNK-RPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMA 373 RPL++LA +KGK+GRFR NL GKRVD+S R+VI+ P L + + G+P +A Sbjct: 285 PPAKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFSARTVISPDPNLSIDEVGIPYTIA 344 Query: 374 LELFKP--------------FIYGKLELRGLATTIKAAKKMVE------REEAVVWDILD 413 L P I G + G IK + ++ R+E Sbjct: 345 RMLTVPERVTNINIERIRQYIINGPDKWPGANYVIKPDGRRIDLRYVKDRKELASSITAG 404 Query: 414 EVIREH-----PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAV 468 V+ H VL NR P+LHR+ + A + ++ G+ +L+ L C YNADFDGD+M + Sbjct: 405 YVVERHLVDGDVVLFNRQPSLHRISMMAHKVRVLPGRTFRLNLLDCPPYNADFDGDEMNL 464 Query: 469 HVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-------------- 514 HVP + EA EAR LM+ NI++P G PII QD + G Y ++ Sbjct: 465 HVPQSEEAIAEARELMLVHKNIITPRYGGPIIGGGQDYISGAYLLSVKTTLLTVEEVATI 524 Query: 515 ---RDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKD 571 D V GE +L A + Y +G + + KD N A S Sbjct: 525 LGVTDFVGELGEPAIL-----APKPYYTGKQVISLFLP-------KDFNFHGPANISKGP 572 Query: 572 TTVGRAIL----WMIVPKGLPYSIV--NQALGKKAISKMLNTCYRILGLKPTVIFADQIM 625 I ++++ GL V +A+G + ML+ R G + D + Sbjct: 573 RACKDEICPHDSFIVIKNGLLLEGVFDKKAIGNQQPESMLHWSIREYGTEYGKWLMDNVF 632 Query: 626 YTGFAYAARSGASVGIDDMVIP-EKKHEI---ISEAEAEVAEIQEQFQSGLVTAGERYNK 681 + G ++ ++D+ IP E ++EI I E ++V E +F G + + Sbjct: 633 KMFIRFLEMRGFTMTLEDITIPDEAQNEITTKIKEGYSQVDEYIRKFNEGQLEPIP--GR 690 Query: 682 VIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLA 741 I+ + + ++D L + + + FN++Y+MA +GARGS I Q+ Sbjct: 691 TIE------ESLESYILDTLDKLRKVAGEIATKYLDPFNNVYIMAITGARGSELNITQMT 744 Query: 742 GM-----------------RGLMAKPDGSIIETP---ITANFREGLNVLQYFISTHGARK 781 + R L G I + +F GL+ + F G R+ Sbjct: 745 ALLGQQSVRGERIRRGYRERTLSLFKYGDIAPEARGFVKNSFMRGLSPYEMFFHAAGGRE 804 Query: 782 GLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIM--MTPVIEGGDVKEPL 835 GL DTA+KT+ SGY+ RRL++ DL + D GT + + V+ G D P+ Sbjct: 805 GLVDTAVKTSQSGYMQRRLINALSDLRIEYD--GTVRSLYGDIVQVVYGDDAVHPM 858 >UniRef50_A9XWB4 DNA-directed RNA polymerase (Fragment) n=3 Tax=fabids RepID=A9XWB4_SECDI Length = 1329 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 129/341 (37%), Positives = 198/341 (58%), Gaps = 18/341 (5%) Query: 622 DQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNK 681 DQI GF A + S+GIDD++ K ++ + E + +++ + G V A E+ + Sbjct: 9 DQIKTLGFQQATATSISLGIDDLLTIPSKGWLVQDVEQQSFILEKHYHYGNVHAVEKLRQ 68 Query: 682 VIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLA 741 I+ W A ++ + + M + + FN +++M+ SGARG+A+Q+ QL Sbjct: 69 SIEAWYATSEYLRQEMNPHFRMTD------------PFNPVHIMSFSGARGNASQVHQLV 116 Query: 742 GMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLV 801 GMRGLM+ P G +I+ I +N REGL++ +Y IS +GARKG+ DTA++TA++GYLTRRLV Sbjct: 117 GMRGLMSDPQGQMIDLSIQSNLREGLSLTEYIISCYGARKGVVDTAVRTADAGYLTRRLV 176 Query: 802 DVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDV-LKPGTADILVPR 860 +V Q +VV DCGT GI ++P G + L ++GRV A+D+ + P I R Sbjct: 177 EVVQHIVVRRTDCGTIRGISVSPR-NGMMSERILIQTLIGRVLADDIYIGPRCIAI---R 232 Query: 861 NTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAA 920 N + + L + +R+ +C + +C CYGR A G ++ GEA+G+IA Sbjct: 233 NQDIGSGLANRLITLQAQPIYLRTPFTCRSLSWICRLCYGRSPAHGDLVELGEAVGIIAG 292 Query: 921 QSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLS 961 QSIGEPGTQLT+RTFH GG + AE ++ + G IK + Sbjct: 293 QSIGEPGTQLTLRTFHTGGVFTGGTAE-CVRAPSNGKIKFN 332 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 48/100 (48%), Positives = 62/100 (62%), Gaps = 5/100 (5%) Query: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLEGEQVEYSRVKIANRE 1291 +VN++Q VYR QGV I+++HIE+IVRQ+ + + G S+ F GE + R + R Sbjct: 1234 LVNKIQKVYRSQGVHIHNRHIEIIVRQITSRVLVSEDGMSNVFSPGEVIGSLRAERMGRV 1293 Query: 1292 LEANGKVGATYSRDLLGITKASLATESFISAASFQETTRV 1331 LE Y LLGITK SL T+SFIS ASFQET RV Sbjct: 1294 LEE----AICYRALLLGITKTSLNTQSFISEASFQETARV 1329 >UniRef50_C7B2E5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Selaginella moellendorffii RepID=C7B2E5_9TRAC Length = 1499 Score = 229 bits (584), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 127/349 (36%), Positives = 195/349 (55%), Gaps = 15/349 (4%) Query: 591 IVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKK 650 N+ + A+ + +++ G T DQ+ +GF A + S+GIDD++ + Sbjct: 9 FCNRVMDGTAMKQFISSLMIHFGKVYTAHILDQLKTSGFQQATHAAVSLGIDDLITTPSR 68 Query: 651 HEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRD 710 +I +AE+ +EQ + G V A ER ++I+ W ++ + M N + Sbjct: 69 EWLIQDAESR-GWFEEQHRYGNVHAVERLRRLIEAWYTTSEYIKTEMNPNFRMTD----- 122 Query: 711 GQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVL 770 N +++M+ SGARG+ +Q Q GMRGLM+ P G II+ PI +NFREG + Sbjct: 123 -------PSNPVHVMSFSGARGNISQTHQSLGMRGLMSDPKGQIIDLPIRSNFREGPSST 175 Query: 771 QYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGD 830 ++ IS +GARKG+ D A++TA++GYLTRRLV+V Q +VV DCGT GI ++PV + Sbjct: 176 EHMISCYGARKGIVDIAVRTADAGYLTRRLVEVVQRIVVRTVDCGTIRGITVSPVRDRQG 235 Query: 831 VKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDT 890 + R +GRV AE+ + R+ + + D L + +RS ++C++ Sbjct: 236 RHRIAQSRPIGRVFAENAYV--ETRCIATRDQEIGAEPADQLIAFHKRPISIRSPLACNS 293 Query: 891 DFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGG 939 F +C CYG L G +I GEA+G++A QSIGEPGTQLT+RTFH GG Sbjct: 294 MFWICQLCYGWSLTHGDLIGLGEAVGIMAGQSIGEPGTQLTLRTFHTGG 342 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 56/134 (41%), Positives = 77/134 (57%), Gaps = 9/134 (6%) Query: 1231 RYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLE-GEQVEYSRVKIAN 1289 R V+ + YR QGV++ DKH E+I RQ+ K + G ++ GE E SR + Sbjct: 1300 RNPVDRIGRGYRSQGVQVADKHTEIIARQVTSKMVALEDGMANASPPGELTEVSRAR--- 1356 Query: 1290 RELEANGKVGATYSRD--LLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGL 1347 + +GA +R L G+T+AS T+S I AS +ETTRV AA+ G+ D +GL Sbjct: 1357 ---RMDCALGAKITRRPVLSGVTRASPNTKSLIPGASSRETTRVSAGAAIRGQTDRSKGL 1413 Query: 1348 KENVIVGRLIPAGT 1361 KEN IVG +IPAGT Sbjct: 1414 KENAIVGGMIPAGT 1427 >UniRef50_Q2EEX0 DNA-directed RNA polymerase subunit beta'' n=1 Tax=Helicosporidium sp. ex Simulium jonesi RepID=RPOC2_HELSJ Length = 1058 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 128/343 (37%), Positives = 191/343 (55%), Gaps = 40/343 (11%) Query: 617 TVIFA-DQIMYTGFAYAARSGASVGIDDM-VIPEKKHEIISEAEAEVAEIQEQFQSGLVT 674 TV F +++ GF A +SG S+GIDD+ P+KK ++I+E ++ +E F ++ Sbjct: 49 TVFFILEKLKEIGFHLATQSGLSLGIDDLKSFPDKK-KLITETRTDLNNNEEHFLLQNIS 107 Query: 675 AGERYNKVIDIWAAAND----RVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGA 730 E+ +I W N+ R+ K + K+ N + +MA SGA Sbjct: 108 PLEKSKYLITKWNDVNNFIIQRIKKVFL----------------KKEPLNPLALMAFSGA 151 Query: 731 RGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKT 790 RG+ +Q+ QL G+RGLM P G ++E PI NFREG+ + +YFIS +GARKGL DTAL+T Sbjct: 152 RGNISQVSQLIGLRGLMTDPLGKLVEFPIQGNFREGMTLTEYFISCYGARKGLVDTALRT 211 Query: 791 ANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLK 850 A +GYLTRRLV V Q + ++ +DC GI + ++ E + ++G ++ Sbjct: 212 ATAGYLTRRLVYVVQHIFISIEDCNVTNGISV-------EINEKSSNSLIGLTLLKNFY- 263 Query: 851 PGTADILVPRNTLLHEQWCDLLEENSVD------AVKVRSVVSCDTDFGVCAHCYGRDLA 904 +I + +NT++ LL NS + ++ RS+++C +C CYG D A Sbjct: 264 --NKNIFIAKNTIISPTLVKLL-LNSYNYLSHKKSIVCRSILTCQLQHTLCQFCYGWDNA 320 Query: 905 RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAE 947 R + GEAIG+IAAQSIGEPGTQLT+RTFH GG + A Sbjct: 321 RAKRVAIGEAIGIIAAQSIGEPGTQLTLRTFHTGGVGGFSGAN 363 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 72/275 (26%), Positives = 122/275 (44%), Gaps = 34/275 (12%) Query: 1101 LPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEAR-----RPKEPAI 1155 P I + I + L T+DI G+PRV L E R +PK Sbjct: 808 FPSDTIYHKMEKDFIFKNELLCSFKSLKPETQDIIQGIPRVEKLLEGRPLPFYKPK---- 863 Query: 1156 LAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPE 1215 E+ I F + G ++ + ++F ++VE +++ Sbjct: 864 -VELYKIWQFFLKNLGFLKI-------------------KNSLFNLKKVESKVYLNNFKP 903 Query: 1216 APH--DILRLRGVHAVTRY---IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAG 1270 + DI L H+ + + I + + +VY +GV I+ KHIE+IVR++ I+N G Sbjct: 904 NLNIGDICYLAYFHSKSNFGLDIASIISNVYLQEGVNISFKHIELIVRELTSLVEIINPG 963 Query: 1271 SSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTR 1330 S F+ E++ + + N+ L++ +Y LG+T+ + SF A SFQ Sbjct: 964 DSGFIVKEKIHWLLIYNYNKRLKSLNLKEISYMPIFLGMTEITKKKNSFGVAGSFQNLRE 1023 Query: 1331 VLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAY 1365 ++ + K D L GL ENV+ ++IPAGTG+ + Sbjct: 1024 IIIDHTFTRKTDYLLGLHENVLFNKIIPAGTGFFF 1058 >UniRef50_Q85FM9 DNA-directed RNA polymerase subunit beta'' n=3 Tax=Polypodiopsida RepID=RPOC2_ADICA Length = 1420 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 130/378 (34%), Positives = 207/378 (54%), Gaps = 22/378 (5%) Query: 587 LPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVI 646 LP+ N+ + + A+ +++ G+ T DQ+ GF A + S+GIDD+ Sbjct: 7 LPF--CNKTIDRAAMKRLIGKLVVCFGIASTTNILDQVKVLGFQQATEASISLGIDDLSA 64 Query: 647 PEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETV 706 + ++ +AE + + ++ G + A E+ + I+ W A ++ + + M + + + Sbjct: 65 VPTRGWLVRDAEKQGYVSEGHYRCGSLHAIEKLRQSIEAWYATSECLKREMSPSFK---M 121 Query: 707 INRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREG 766 I+ N ++MM+ SGARG+ +Q+ QL GMRGLMA P G +I+ PI N REG Sbjct: 122 ID---------PLNPVHMMSVSGARGTISQVHQLLGMRGLMADPRGQVIDLPIRRNLREG 172 Query: 767 LNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVI 826 L++ +Y IS +GARKG+ DTA++T+++GYLTRRLV+V Q + V DC T + Sbjct: 173 LSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIAVRRRDCETPRSLAFLTSN 232 Query: 827 EG----GDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKV 882 G G + ++GRV A+ V + RN + + L +S + V Sbjct: 233 TGERRRGFLGTMPHQGLVGRVLADHVY--WDVRCIATRNQDISDGLASNLMASS-QPIHV 289 Query: 883 RSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAAS 942 RS ++C + F +C CYG LA +++ GEA+G+IA QSIGEPGTQLT+RTFH GG + Sbjct: 290 RSPLTCKSIFWICQFCYGWSLAHCNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFT 349 Query: 943 RAAAESSIQVKNKGSIKL 960 AE +++ G IK Sbjct: 350 GDIAE-YVRIPFNGLIKF 366 Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 89/251 (35%), Positives = 131/251 (52%), Gaps = 49/251 (19%) Query: 1115 ISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVS--FGKETKGK 1172 + GDTL +P + + DIT GLP+V L E+R +A IS + F K + Sbjct: 1150 LEEGDTLITLPYDRLKSGDITQGLPKVEQLLESRS------IASISAGIGDLFEKWCQNI 1203 Query: 1173 RRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRY 1232 +L+ P W L + G +E +I Sbjct: 1204 TKLIGNP-------------WSHL-LGAGRSMEHCQLI---------------------- 1227 Query: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLEGEQVEYSRVKIANRE 1291 ++++++ VY QGV+I DKH+E+IVRQ+ + G ++ FL GE VE S+ + NR Sbjct: 1228 LIDQIRKVYESQGVRICDKHLEIIVRQLTSRVVASEDGVTNVFLPGELVELSQAERINRV 1287 Query: 1292 LEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 L K Y +LG+T+ASL+T SF++ ASFQETTRVL +AA+ G+ D L+GLKENV Sbjct: 1288 L----KKSIFYEPIVLGMTRASLSTTSFLAEASFQETTRVLAKAALRGRIDWLKGLKENV 1343 Query: 1352 IVGRLIPAGTG 1362 ++G +P GTG Sbjct: 1344 VIGDSVPVGTG 1354 >UniRef50_A9CTM9 DNA-directed RNA polymerase n=1 Tax=Enterocytozoon bieneusi H348 RepID=A9CTM9_ENTBH Length = 1174 Score = 216 bits (551), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 190/719 (26%), Positives = 318/719 (44%), Gaps = 125/719 (17%) Query: 217 LTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRN 276 L K IK + S P +++ L V P +RP V +D F DL +IN N Sbjct: 180 LFKNIKETDLLFLSCKNPCNLLIKTLLVPPCCIRPSVDMDQDGFNEDDLTVKLSEIINCN 239 Query: 277 NRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQG 336 N ++ + A I + + LQ + +++ IT N +KS+ +KGKQG Sbjct: 240 NLIEENIKKGASLITLNEDWDYLQLQIALYINSDLPSIHIT--NNDNIKSIIHRLKGKQG 297 Query: 337 RFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKP---FIYGKLELRGLATT 393 RFR NL GKRVD+SGR+VI+ P L + Q G+PK++ALE+ P ++ K EL+ L Sbjct: 298 RFRMNLSGKRVDFSGRTVISPNPNLSIEQIGVPKEIALEMTIPEKVTVFNKEELQILVNN 357 Query: 394 ----IKAAKKMVERE----------------------EAVVWDILDEVIRE-HPVLLNRA 426 I A ++ E E V DI++ I++ VL NR Sbjct: 358 GPNCIDGANYIIRNEVRNNETRTFKIFLKFAKNPKVRELKVGDIVERHIKDGDIVLFNRQ 417 Query: 427 PTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMS 486 P+LHR+ I A L + + Q + VC YNADFDGD+M +H+P T AQ EA LM Sbjct: 418 PSLHRMSIMAHRVKLHDNRTFQFNESVCNPYNADFDGDEMNIHLPQTKAAQAEAIELMSI 477 Query: 487 TNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVLTGPKEAER---------L 536 NI + N EP+I P+QD + G+Y +T ++ + K E L G + + Sbjct: 478 KKNICTIKNNEPLISPTQDFITGMYLLTNKNKILTKTEFYKLIGHIHHGKRIIIEPSIII 537 Query: 537 YRSGLA------------SLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVP 584 Y+S LH+ V + + ++ ++ + L T+ ++I+ Sbjct: 538 YKSTTVIKLFTGKQIVDYMLHS-VTINLKTKNRNKEDVIIKNSKLIQGTIDKSIIG---A 593 Query: 585 KGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDM 644 + S++ Q + + C + F + I Y G S+G+DD+ Sbjct: 594 ENKNSSLIYQLFKQSKVE-----CIK---------FINNISKISIRYIMEYGFSIGLDDI 639 Query: 645 VIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTE 704 + ++ ++ ++ N + I ND +++ L+ Sbjct: 640 YLSND----LNRSKNKLV----------------LNIINTINKECNDGTNRS---ELKKT 676 Query: 705 TVINRDGQEEKQVSFNSI------YMMADSGARGSAAQIRQL---------AGMR---GL 746 +++N+ ++ + N++ +MA+ G++GS I Q+ +GMR G+ Sbjct: 677 SLLNKIREDCGTMCLNTLNKNNAAVVMAECGSKGSKINISQMITCVGQQIVSGMRIQNGM 736 Query: 747 MAKP-----------DGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGY 795 K D I + +F GL ++F R+GL DTA+KTA++GY Sbjct: 737 YDKTIPHMKNIPNILDDVIYRGFVYNSFFTGLKAYEFFFHAISGREGLVDTAVKTADTGY 796 Query: 796 LTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTA 854 + RRL+ ++L + D+ + + + G D K+PL D + T + ++PGTA Sbjct: 797 MQRRLMKALENLSIKYDNTVRNNNNEIIQFLYGEDGKDPLYDETID-ATIKKFIEPGTA 854 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 23/35 (65%), Positives = 27/35 (77%) Query: 908 IINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAAS 942 I G A+G IAAQSIGEPGTQ+T++TFH G AS Sbjct: 848 FIEPGTAVGAIAAQSIGEPGTQMTLKTFHFAGVAS 882 >UniRef50_O96452 DNA-directed RNA polymerase n=3 Tax=Eukaryota RepID=O96452_ANTLO Length = 1553 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 238/858 (27%), Positives = 383/858 (44%), Gaps = 125/858 (14%) Query: 19 AIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRL 78 AI+ L SP+ IR+ S ++ PET+ P+ GL R+ +DY Sbjct: 13 AIQFGLFSPEEIRASSVALIRYPETLENGV--PKESGLIDLRMGTTERDY---------- 60 Query: 79 KHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERV 138 +C C + V GHIEL P H+ F+ SRI +L E V Sbjct: 61 -----LCATCNQD---NYVCAGHFGHIELVKPMFHVGFI----SRIKKVL-------ECV 101 Query: 139 LYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAI---QALLKSMDLE 195 ++ S V I T + ++ + L+ + KM E Q ++K L Sbjct: 102 CFYCSKVRINKNKTTITKES----KHKLNFIWGICKN---KMVCEDCNNRQPVIKKEGLS 154 Query: 196 QECEQLREELNE----TNSE---TKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPD 248 EE NE N E KK+ F ++PE+MIL+VL V PP Sbjct: 155 LFAYMKGEENNEGKVMLNGERVYNIFKKINNEDLEFLGFNIKYSRPEYMILSVLLVAPPA 214 Query: 249 LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLD 308 +RP + ++G DL Y +I N LK+ + AP I+R+ ++++Q V L+D Sbjct: 215 VRPSIVMEGTLRGEDDLTYKYSDIIKSNQNLKKYEEEGAPAHIIRDYEQLVQFHVATLID 274 Query: 309 NGRRGRA-ITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCG 367 N G+ N RPLK+++ +KGK+GR R NL+GKRVD+S RSVIT P + L + G Sbjct: 275 NEISGQPQALQKNGRPLKAISARLKGKEGRLRGNLMGKRVDFSARSVITADPNISLEELG 334 Query: 368 LPKKMAL-----ELFKPFIYGKLELRGLATT----IKAAKKMVEREEAVV------WDIL 412 +P K+A+ E F KL R L + A ++ R+ + D++ Sbjct: 335 VPMKVAMIHTFPERVTSFNLNKL--RKLVSNGPNKYPGANYLIRRDGQRIDLNFSRGDVI 392 Query: 413 DE---VIREHP-----VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGD 464 E V+ H VL NR P+LH++ + A + +++G +L+ A YNADFDGD Sbjct: 393 LEEGYVVERHMLNGDLVLFNRQPSLHKMSMMAHKVKVMDGLTFRLNLSATAPYNADFDGD 452 Query: 465 QMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEG 524 +M +H+P + ++ E LM+ + +I+SP + +P++ QD +LG+ +T +G Sbjct: 453 EMNLHMPQSYNSKAELSELMLVSKHIISPQSNKPVMGIIQDTLLGVCRLT-------SKG 505 Query: 525 MVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVP 584 + + + +Y S L + A +K I + G+ + +L R +++ Sbjct: 506 VFIKREEFCNLVYASNLVA-RANIKPAIARPKILYTGKQLFSLTLPKLNFFRD--KVVIM 562 Query: 585 KGLPYSIVNQALGKKAISKMLNTCYRIL----GLKPTVIFADQIMYTGFAYAAR-SGASV 639 G+ ++N + KK++ + I+ G + F D + Y S SV Sbjct: 563 DGV---LLNGVICKKSVGTAQGSLIHIIANDYGHEEITRFIDSLQKLISTYLTLISTFSV 619 Query: 640 GIDDMV-IPEKKHEI---ISEAEAEVAE-IQEQFQSGLVTAGERYNKVIDIWAAANDRVS 694 GI D + PE I I +A+AEV + I + + G + N + + N ++ Sbjct: 620 GIGDTISSPETMAHISRAIGDAKAEVKQLIYDSRRRGSLEKLPGMNLQETLESKINLALN 679 Query: 695 KAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLA---GMRGLMAK-- 749 KA D T V E N + M +G++GS I Q+ G + + +K Sbjct: 680 KA-RDISGTRAV-------ESLNHLNGLKQMLKAGSKGSYINISQITSCVGQQNIESKRI 731 Query: 750 PDGSIIET-P--------------ITANFREGLNVLQYFISTHGARKGLADTALKTANSG 794 P G T P +T ++ GLN ++F G R+GL DTA KTA +G Sbjct: 732 PFGFRQRTLPHFVKNDYGPESRGFVTNSYLSGLNPEEFFFHAMGGREGLIDTACKTAETG 791 Query: 795 YLTRRLVDVAQDLVVTED 812 Y+ RR+V +D + D Sbjct: 792 YIQRRIVKAMEDARIEYD 809 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%) Query: 901 RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAA 941 + RG II+ E +G +AAQSIGEP TQ+T+ TFH G A Sbjct: 1014 KKFVRG-IISTNEMVGTLAAQSIGEPATQMTLNTFHYAGVA 1053 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 43/146 (29%) Query: 1219 DILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGE 1278 ++ + G+ AV I+ E+++V +G +N +H+ ++ M K Sbjct: 1270 EVYEVLGIEAVRECILRELRNVIEAEGSYVNFRHLYLLCDVMTLKG-------------- 1315 Query: 1279 QVEYSRVKIANRELEANGKVGATYSRDLLGITK--ASLATESFISAASFQETTRVLTEAA 1336 L GIT+ A+ A + SF+ET +L EA+ Sbjct: 1316 ---------------------------LRGITRHGANRAATGALKRCSFEETVEILLEAS 1348 Query: 1337 VAGKRDELRGLKENVIVGRLIPAGTG 1362 +R+ RG+ EN+++G+L P GTG Sbjct: 1349 CFAERNYCRGVTENIMLGQLAPIGTG 1374 >UniRef50_A6YGE2 DNA-directed RNA polymerase n=2 Tax=cellular organisms RepID=A6YGE2_LEPTE Length = 3576 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 101/259 (38%), Positives = 163/259 (62%), Gaps = 12/259 (4%) Query: 591 IVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKK 650 N K + +++ + G T+ +++ GF YA +G+S+G++D+ IP +K Sbjct: 7 FFNNCFNKSKLKALIDISFSQSGAHKTLDLLERLKKLGFYYATYAGSSLGLEDLKIPPQK 66 Query: 651 HEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRD 710 ++++AE ++ I+ Q+Q G +TA E + +VID+W +++ + + ++++ ++ ++N Sbjct: 67 STMMAQAEYQMQVIETQYQQGEITAVEHFQQVIDLWQRSSENLKEEVINHFRSTDILN-- 124 Query: 711 GQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVL 770 +YMMA SGARG+ +Q+ QL GMRGLM+ P G II PI +NFREG+ V Sbjct: 125 ----------PVYMMAFSGARGNMSQVHQLVGMRGLMSDPQGEIISFPIRSNFREGITVT 174 Query: 771 QYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGD 830 +Y IS GARKGL DTALKTA SGYLTRRLVDV+Q+ +V+ +CGT +G+ + + EG Sbjct: 175 EYVISCFGARKGLVDTALKTAKSGYLTRRLVDVSQEFLVSMFECGTQQGLPLMELKEGAK 234 Query: 831 VKEPLRDRVLGRVTAEDVL 849 L DR++GRV E ++ Sbjct: 235 TLYSLEDRLIGRVLWETLV 253 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 38/63 (60%), Positives = 47/63 (74%) Query: 880 VKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGG 939 V VRS ++C+ VC CYG L++ ++N GEA+G+IAAQSIGEPGTQLTMRTFH GG Sbjct: 351 VIVRSPLTCNLRNSVCQLCYGWSLSQQGLVNLGEAVGIIAAQSIGEPGTQLTMRTFHTGG 410 Query: 940 AAS 942 S Sbjct: 411 VFS 413 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/87 (56%), Positives = 56/87 (64%), Gaps = 2/87 (2%) Query: 1279 QVEYSRV--KIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAA 1336 Q EYS+ KI L+ Y L GIT+ASL TES +SA SFQETTR L+ AA Sbjct: 3443 QTEYSKTGRKIEEALLKQVLIPSVIYWPRLRGITRASLNTESVLSAVSFQETTRGLSIAA 3502 Query: 1337 VAGKRDELRGLKENVIVGRLIPAGTGY 1363 + KRD LRG+KE VIVG LIP GTGY Sbjct: 3503 FSRKRDFLRGIKERVIVGELIPTGTGY 3529 >UniRef50_Q9AXN0 DNA-directed RNA polymerase n=4 Tax=Rhodophyta RepID=Q9AXN0_9RHOD Length = 1746 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 226/911 (24%), Positives = 391/911 (42%), Gaps = 181/911 (19%) Query: 7 FLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVK 66 FL + + ++ A++ + SPD IR S E+K ET + KP+ +GL R+ G + Sbjct: 7 FLYSSAEVKKVKAVQFGVLSPDEIRRMSVCEIKF-ETA-FEMGKPKTEGLMDPRL-GAIG 63 Query: 67 DYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGL 126 R + C+ C + K GHIEL P +I F Sbjct: 64 --------------RDLPCKTCHCD---EKNCPGHFGHIELVKPMFNIGFF--------- 97 Query: 127 LLDMPLRDIERVLYFESYVVIE--GGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEA 184 M LR + V +F S ++I+ + E +++L + ++ L++ Sbjct: 98 --GMTLRVLRCVCFFCSKLLIDPRDPKADFEVKKVLRIKNRINRLKK------------- 142 Query: 185 IQALLKSMDLEQECE-----------QLREELNETNSET-KRKKLTKRIKLLEAFVQ--- 229 +Q L + + + C Q R E + +T ++K++ K+L F Sbjct: 143 VQNLCSKVKICKHCSNEQPKFAKEGLQFRAEFKGSADDTMEKKQIVSAEKVLSIFKHISD 202 Query: 230 ----------SGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRL 279 ++PEW ILT+ PV PP +RP V +D DL ++ NN L Sbjct: 203 DDIEIMGLSPQHSRPEWFILTLFPVPPPHIRPSVMMDASMRGEDDLTYKLGDIVRNNNAL 262 Query: 280 KRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRG--RAITGSNKRPLKSLADMIKGKQGR 337 + + AP + + +LQ + +++N G RA S RP+KS++ +KGK+GR Sbjct: 263 REMERTGAPAHRLNEQIHVLQAHIITIMNNDLPGMPRAHQKSG-RPIKSISQRLKGKEGR 321 Query: 338 FRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIK-- 395 R NL+GKRVD+SGR+VI+ P LRL Q G+P+ +A+ L P + + + + Sbjct: 322 VRGNLMGKRVDFSGRTVISPDPNLRLDQVGVPQTIAMNLTYPEVVTPFNVEKMRRLVMNG 381 Query: 396 ----AAKKMVEREEAVVWDIL-------------DEVIRE----HPVLLNRAPTLHRLGI 434 K +ER + ++ ++VIR V+ NR P+LH++ I Sbjct: 382 PNEYPGAKYIERLDGSKVNLAFVKNRSDIHLNNGEKVIRHLLDGDYVIFNRQPSLHKMSI 441 Query: 435 QAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPA 494 ++ + +L+ + YNADFDGD+M +HVP + +A+ E LMM I+SP Sbjct: 442 MGHRVKVMRYSSFRLNLSCTSPYNADFDGDEMNLHVPQSPQARAEVMQLMMVPRCIVSPQ 501 Query: 495 NGEPIIVPSQDVVLGLY-------YMTRDCV-----NAKGEGMVLTGPK--------EAE 534 +P++ QD ++G +M +D V + +G V+ P + Sbjct: 502 GNKPVMGIVQDTLVGTMLFTQRDTFMEKDLVMNLLLHFRGWDGVIPPPAILKPRQLWTGK 561 Query: 535 RLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQ 594 +L+ L ++ VR + D + E T + + R L L ++ + Sbjct: 562 QLFSMILPDVNL---VRFSNTHDDDDIENAGDTKV---LISRGEL-------LSGTVDKR 608 Query: 595 ALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKH--- 651 +G A S +++ ++ G + I + + G S+GI D + E+ Sbjct: 609 TVGSAANS-LVHVTWKEHGPEGACDLISNIQTLVNHWLLQRGFSIGIGDTIADEQTRFNV 667 Query: 652 -EIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQT--ETVIN 708 EII++A+ EV + + Q G + K MM++ +T V+N Sbjct: 668 IEIINKAKEEVKRLVRKAQEGELQL----------------LPGKTMMESFETGVNKVLN 711 Query: 709 ----RDGQEEKQ--VSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIET----- 757 + G + ++ + N+I M ++G++GS I Q+ G +G I Sbjct: 712 GARDKSGSDAQKSLLKTNNIKRMVNAGSKGSFINISQICACVG-QQNVEGKRISYGFRRR 770 Query: 758 -----------PITANFRE-----GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLV 801 P + F E GL ++F G R+GL DTA+KT+ +GY+ RRL+ Sbjct: 771 TLPHFVLDDLGPESRGFVENSYLRGLTATEFFFHAMGGREGLIDTAVKTSETGYIQRRLI 830 Query: 802 DVAQDLVVTED 812 +D++V D Sbjct: 831 KALEDVMVKYD 841 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 24/32 (75%) Query: 912 GEAIGVIAAQSIGEPGTQLTMRTFHIGGAASR 943 GE IG +A QSIGEP TQ+T+ TFH G +++ Sbjct: 1079 GEMIGAVAPQSIGEPATQMTLNTFHFAGVSAK 1110 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 31/40 (77%) Query: 1323 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362 SF+ET +L EAA+ G+ D+++G+ EN+++G++ P GTG Sbjct: 1426 CSFEETADILLEAAMYGEVDDMKGVAENIMLGQMAPVGTG 1465 >UniRef50_C0JWS4 DNA-directed RNA polymerase n=1 Tax=Pycnococcus provasolii RepID=C0JWS4_9CHLO Length = 1341 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 103/219 (47%), Positives = 148/219 (67%), Gaps = 4/219 (1%) Query: 317 TGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALEL 376 T + K L SLAD +KGK G R+++LGKR DYSGR+VI GP L L +CGLP MAL L Sbjct: 1038 TSAQKSQLVSLADTLKGKYGLLRRHMLGKRADYSGRTVIVAGPELALEECGLPYDMALGL 1097 Query: 377 FKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQA 436 F+PF+ + A +I AK++++ + + +L+ +I HP+LLNRAPTLHR+GIQA Sbjct: 1098 FRPFLIHTILRDRKAGSIGGAKRLLQSCQTATYRLLESLIEHHPILLNRAPTLHRMGIQA 1157 Query: 437 FEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANG 496 F PVL+ G A+ LHPLVC +NADFDGD MA+H+P++ A+ EA L+ + +SP++G Sbjct: 1158 FTPVLVPGFAVHLHPLVCPPFNADFDGDTMAIHLPMSHVARAEAHVLLSGSLFPVSPSSG 1217 Query: 497 EPIIVPSQDVVLGLYYMTR----DCVNAKGEGMVLTGPK 531 + ++PSQD+VLG + +T+ D + G G V + P+ Sbjct: 1218 DGSLLPSQDIVLGCFALTQLQGDDPLEKLGVGQVYSQPQ 1256 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 5/110 (4%) Query: 42 ETINYRTFKPERDGLFCARIFGPVKDYEC----LCGKYKRLKHRGVICEKCGVEVTQTKV 97 ET+ Y+T++PE GLFC FGPV+ C G + CG +T++ Sbjct: 127 ETLKYKTYQPEPKGLFCEYYFGPVEGGRCPKCGWTGPITQSPQMSCPNASCGYPSLETRI 186 Query: 98 -RRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVV 146 RR +MG+I LA P H W+ + S + L + ++ + FE+Y+V Sbjct: 187 TRRSQMGYIRLAIPCIHPWYAFTWASPLSTFLGIEPNLLQLIFDFEAYLV 236 >UniRef50_B8BQ02 DNA-directed RNA polymerase n=1 Tax=Thalassiosira pseudonana CCMP1335 RepID=B8BQ02_THAPS Length = 1627 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 213/817 (26%), Positives = 349/817 (42%), Gaps = 161/817 (19%) Query: 102 MGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLER-QQIL 160 GHIELA P H F+ D+ L+ + V + S + +E +R +QI Sbjct: 100 FGHIELARPVYHQGFI-----------DVTLKALRCVCFHCSRITMEDTEYKFQRARQIR 148 Query: 161 TEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKR 220 ++ LDA+ Q + L E E E S +K+ Sbjct: 149 NRKRRLDAMHALIRPKKKCDHCNGYQPKYTKVGLHVEIEYADEMERVPGSSGDKKQFMSA 208 Query: 221 IKLLEAFVQ-------------SGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLND 267 K ++ F + + +PEWM ++V+PV P +RP V + GG A S +D Sbjct: 209 QKAVDIFKKMRDDEVKALGLDVTWARPEWMCVSVMPVPPLHVRPSVVMGGG--AQSSEDD 266 Query: 268 LYRRVIN---RNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRA-ITGSNKRP 323 L +++N N LK + P+IIV ++ LQ V A ++N RG IT + RP Sbjct: 267 LTHQLVNIVKSNIALKTAIQNGEPNIIVEQFEQALQHNVAAFVNNEMRGMPQITQRSGRP 326 Query: 324 LKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYG 383 LK+LA +K K+GR R NL+GKRVD+S R+VIT P L +HQ G+P+ +A+ L P Sbjct: 327 LKTLAQRLKAKEGRIRGNLMGKRVDFSARTVITADPNLGIHQVGVPRSVAMNLTVPTRVT 386 Query: 384 KLELRGLATTI------KAAKKMVEREEAVVWD----------------ILDEVIREHP- 420 ++ L+ + K + R + + D I++ +R+ Sbjct: 387 PFNIQELSALVANGPTEHPGAKHIIRSDGLRIDLRYVKNKSDLLLANGWIVERHLRDGDI 446 Query: 421 VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480 VL NR P+LH++ I +++ +L+ + YNADFDGD+M +HVP +L A+ EA Sbjct: 447 VLFNRQPSLHKMSIMGHMAKVLDWSTFRLNLSCTSPYNADFDGDEMNLHVPQSLPARAEA 506 Query: 481 RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSG 540 +M S I+S + P++ QD +L + MT+ V K + M Sbjct: 507 ELMMHSPRVIVSGQSNRPVMGIVQDSLLAVQKMTKRDVFVKKDLM--------------- 551 Query: 541 LASLHARVKVRITEYEKDANGELVAKTSLK--DTTVGRAILWMIVPK---------GLP- 588 + I + +D +G + + + G+ I+ MI+PK G P Sbjct: 552 ---------MNILMWVEDWDGRIPPPAIYRPEELWTGKQIMSMILPKINLTGKANNGGPG 602 Query: 589 ------YS---------IVNQALGKKAISK----MLNTCYRILGLKPTVIFADQIMYTGF 629 Y ++ + KK I +++T + +G + T F +Q Sbjct: 603 PNTFNAYDNLVRVMEGELIEGTIDKKTIGSGMGGLIHTAWLDVGHEDTARFMNQTQVVTN 662 Query: 630 AYAARSGASVG----IDDMVIPEKKHEIISEAEAEVAEIQEQFQSG---------LVTAG 676 + +S S+G I D E+ I++A+ +V ++ Q Q G ++ + Sbjct: 663 YWVLQSSFSIGVCDTIADFATMEQIASTINKAKLQVLDLVRQGQRGELETQPGRTMIESF 722 Query: 677 ERY-NKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAA 735 E++ NKV++ A D K+ +L ET NS+ M +G++GS Sbjct: 723 EQFVNKVLN---TARDHAGKSAQASLD-ET--------------NSVKAMVTAGSKGSFI 764 Query: 736 QIRQLAGMRGL-------------------MAKPD-GSIIETPITANFREGLNVLQYFIS 775 I Q+ G +K D G + ++ GL ++F Sbjct: 765 NISQIIACVGQQNVEGNRIPYGFKRRTLPHFSKDDLGPESRGFVENSYLSGLTPQEFFFH 824 Query: 776 THGARKGLADTALKTANSGYLTRRLVDVAQDLVVTED 812 G R+GL DTA KTA +GY+ RRLV + ++ D Sbjct: 825 AMGGREGLIDTACKTAETGYIQRRLVKAMETVMARYD 861 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 19/35 (54%), Positives = 27/35 (77%) Query: 909 INKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASR 943 ++ GE GV+AAQSIGEP TQ+T+ TFH G +++ Sbjct: 1077 VSPGEMAGVLAAQSIGEPATQMTLNTFHYAGVSAK 1111 >UniRef50_Q74M69 DNA-directed RNA polymerase n=1 Tax=Nanoarchaeum equitans RepID=Q74M69_NANEQ Length = 870 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 227/893 (25%), Positives = 367/893 (41%), Gaps = 182/893 (20%) Query: 26 SPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVIC 85 P++IR S EVK PE + RDGL GP+ + G+ C Sbjct: 15 DPEVIRKLSVVEVKIPEPYD-------RDGLPIEN--GPMDPRMGVIDP-------GLRC 58 Query: 86 EKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYV 145 + CG + + G IELA P H+ FL +I+R+L Y Sbjct: 59 KTCGGKYGEC---LGHFGRIELARPVYHVKFLN---------------EIKRLL---QYT 97 Query: 146 VIEGGMTNLERQQILTEEQYLDALEEF-----GDEFDAKMGAEAIQALLKSMDLEQECEQ 200 + G + ++ +EQ+L + E+ DE + + I + + ++C Sbjct: 98 CPKCGRAIIPQK---LKEQFLKKINEYINEGKYDELSNFIQSTVIPKINEYRKKHKKCPY 154 Query: 201 LREELNETNSETK-----RKKLTKR---IKLLEAFVQS----------------GNKPEW 236 EL E E ++K+ + +KL V+ +PEW Sbjct: 155 CNAELKEIKFEKPWYFYIKEKIGDKEEWVKLTPLDVRQWLEKIPDEDAKLFGIINGRPEW 214 Query: 237 MILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEK 296 ++LTV+ V P RP + L+ G + DL ++ NNR++ LL AP+ I+ Sbjct: 215 LVLTVILVPPVTARPSIILETGERSEDDLTHKIADIVRINNRIEELLSYGAPEPILEENW 274 Query: 297 RMLQEAVDALLDNG----RRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGR 352 MLQ V DN + R +G RPLK L IKGK+GR R+NL GKRV++S R Sbjct: 275 EMLQYHVATYFDNELPNVPKARHRSG---RPLKGLLQRIKGKEGRLRRNLAGKRVNFSAR 331 Query: 353 SVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI------------------ 394 VI+V P + + + G+P+++A EL P I + L L + Sbjct: 332 GVISVDPRIDIDEVGVPEQVAKELTFPEIVTEWNLDWLKQKVLNGPESLDGANYVIDPNG 391 Query: 395 KAAKKMVEREEAVV------WDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQ 448 + K M E +E + W + +I L NR P+LH++ + V++ GK + Sbjct: 392 RRFKIMEENKEELAERLEPGWVVERHIINGDYALFNRQPSLHKMSMMGHRSVILPGKTFR 451 Query: 449 LHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVL 508 L+P YNADFDGD+M H+ E + E L +I++P G II ++D++ Sbjct: 452 LNPATTTPYNADFDGDEMNYHLVQNYEGKTEIEFLANVREHIVTPRYGLAIIGATEDIIT 511 Query: 509 GLYYMT-------RDCV-----NAKGEG-----MVLTGPKEAERLYRSGLASLHARVKVR 551 GLY ++ +D + N K G ++ K+ R Y +G A + Sbjct: 512 GLYLLSLKDKIPFKDAIQLIEYNCKYFGKDKILKLVEKAKKEGRDYLTGKEVFSALLPDD 571 Query: 552 ITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRI 611 + K NGE V K I+ KG ++++ + K++ + Sbjct: 572 LDFEIKTKNGEFVIKNG-------------ILLKG----VIDKEIVGVEKGKLIRELFER 614 Query: 612 LGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIP----EKKHEIISEAEAEVAEIQEQ 667 G + T + + Y R ++ D+ IP E+ +II +A+ EV + E+ Sbjct: 615 YGPEFTFKWLSDVTRLSVNYLTREQLTISFSDIDIPKEVKEQIRKIIEKAKKEVDNLIER 674 Query: 668 FQSGLV------TAGERYN-KVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVS-F 719 ++ G + T E +++ + A D V + + EK V Sbjct: 675 YKKGEIKPLPGRTIEETLEIEILKVLNKARDEVGEVI----------------EKHVDPT 718 Query: 720 NSIYMMADSGARGSAAQIRQLAGMRGLMA-------------------KPDGSI-IETPI 759 ++A SGARG + Q+ G+ G + K D S + Sbjct: 719 KGTMILAKSGARGKLLNLIQVVGLVGQQSISGRRMEEGYKDRVLPHFKKGDKSAKARGFV 778 Query: 760 TANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTED 812 F +GL+ +++F + L DT L+T SGYL RRLV V +DL V D Sbjct: 779 EHGFADGLDPIEFFFHAASGKDALMDTTLRTPKSGYLYRRLVSVLRDLYVEND 831 >UniRef50_A7BNB4 DNA-directed RNA polymerase beta chain n=1 Tax=Beggiatoa sp. SS RepID=A7BNB4_9GAMM Length = 254 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 105/244 (43%), Positives = 156/244 (63%), Gaps = 16/244 (6%) Query: 833 EPLRDRVLGRVTAEDVLK-PGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTD 891 E L +R+LGRV AE+++ P + + TLL E +EE + VKVRS ++C + Sbjct: 10 ESLTERLLGRVLAENIVTTPRSKKPVFKAGTLLDENSVKRIEELGIKHVKVRSPITCKSQ 69 Query: 892 FGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQ 951 +G+CA CYGRDLARG +N GEAIGV+AAQSIGE GTQLTMRT GG A RA A + IQ Sbjct: 70 YGICAMCYGRDLARGQWVNIGEAIGVMAAQSIGEAGTQLTMRTHRAGGVAKRAVAVNQIQ 129 Query: 952 VKNKGSIKLSNVKSVVNS--------------SGKLVITSRNTELKLIDE-FGRTKESYK 996 V +KG +KL N+K + + + ++ S++ E+ ++DE G+ E +K Sbjct: 130 VNSKGVVKLHNIKLIQQQRTKRGKSKSKSSRLTSQYLVISQSNEISILDERSGKECEQHK 189 Query: 997 VPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGL 1056 +PYGA+L DG+ V G+ +A WDPH+ P+ITE++G++R ++I+G T+ R D+ T + Sbjct: 190 IPYGAILNVNDGDTVEVGQQIATWDPHSYPIITELAGYIRLINVIEGVTVNRDVDKHTNI 249 Query: 1057 SSLV 1060 ++V Sbjct: 250 VTIV 253 >UniRef50_P24928 DNA-directed RNA polymerase II subunit RPB1 n=93 Tax=Eukaryota RepID=RPB1_HUMAN Length = 1970 Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 241/921 (26%), Positives = 380/921 (41%), Gaps = 193/921 (20%) Query: 20 IKIALASPDMIRSWSF--GEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKR 77 ++ + SPD ++ S G +K PET +P+ GL R Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETT--EGGRPKLGGLMDPR----------------- 61 Query: 78 LKHRGVI-----CEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPL 132 +GVI C+ C +T+ GHIELA P H+ FL + Sbjct: 62 ---QGVIERTGRCQTCAGNMTECP---GHFGHIELAKPVFHVGFLVKT-----------M 104 Query: 133 RDIERVLYFESYVVIEGGMTNL---------ERQQILTEEQYL---DALEEFGDEFDAKM 180 + + V +F S ++++ + + ++ LT L + E G+E D K Sbjct: 105 KVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKF 164 Query: 181 GAEAIQALLKSMDLEQE-----CE-----------QLREELNETNSETKRKKLT------ 218 G E + DL +E C +L E N +++ KK+ Sbjct: 165 GVEQPEG---DEDLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERV 221 Query: 219 ----KRIKLLEAFVQSGN----KPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYR 270 KRI E FV +PEWMI+TVLPV P +RP V + G DL Sbjct: 222 HEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLA 281 Query: 271 RVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRG--RAITGSNKRPLKSLA 328 ++ NN+L+R A ++ + ++LQ V ++DN G RA+ S RPLKSL Sbjct: 282 DIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSG-RPLKSLK 340 Query: 329 DMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELR 388 +KGK+GR R NL+GKRVD+S R+VIT P L + Q G+P+ +A + I + Sbjct: 341 QRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 400 Query: 389 GLATTIKAAKKMVEREEAVVWDILDEV-IREHP----------------------VLLNR 425 L ++ + ++ D D + +R HP V+ NR Sbjct: 401 RLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNR 460 Query: 426 APTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMM 485 PTLH++ + ++ +L+ V YNADFDGD+M +H+P +LE + E + L M Sbjct: 461 QPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAM 520 Query: 486 STNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVL---------TGPKEA-- 533 I++P + P++ QD + + T RD +GE M L P+ A Sbjct: 521 VPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAIL 580 Query: 534 -ERLYRSG--LASL----HARVKVRITEYEKDANGELVAKTSLKDTTV----GRAILWMI 582 R +G + SL H + + D + S DT V G I+ ++ Sbjct: 581 KPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGIL 640 Query: 583 VPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGID 642 K +LG A S +++ Y +G T +F I + G ++GI Sbjct: 641 CKK---------SLGTSAGS-LVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIG 690 Query: 643 DMVIPEKKHE----IISEAEAEVAEIQEQFQSGLV--TAGERY-----NKVIDIWAAAND 691 D + K ++ I +A+ +V E+ E+ + + T G N+V I A D Sbjct: 691 DSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARD 750 Query: 692 RVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQ---LAGMRGLMA 748 + + +L +N+ M SGA+GS I Q + G + + Sbjct: 751 KTGSSAQKSLS---------------EYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEG 795 Query: 749 K--PDGSIIET----------PITANFRE-----GLNVLQYFISTHGARKGLADTALKTA 791 K P G T P + F E GL ++F G R+GL DTA+KTA Sbjct: 796 KRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTA 855 Query: 792 NSGYLTRRLVDVAQDLVVTED 812 +GY+ RRL+ + ++V D Sbjct: 856 ETGYIQRRLIKSMESVMVKYD 876 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 21/40 (52%), Positives = 30/40 (75%) Query: 1323 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362 SF+ET VL EAA G+ D ++G+ EN+++G+L PAGTG Sbjct: 1430 CSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTG 1469 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 18/36 (50%), Positives = 27/36 (75%) Query: 908 IINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASR 943 I + GE +G +AAQS+GEP TQ+T+ TFH G +++ Sbjct: 1080 IAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAK 1115 >UniRef50_D2VMG0 RNA polymerase II largest subunit n=1 Tax=Naegleria gruberi RepID=D2VMG0_NAEGR Length = 1650 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 226/839 (26%), Positives = 346/839 (41%), Gaps = 171/839 (20%) Query: 85 CEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESY 144 C CG V++ GH+ + PT +I FLK+ I +L R+L+ Sbjct: 66 CMTCGCGVSECP---GHFGHVNI-HPTFNILFLKT----IVKILKCTCVHCSRLLF---- 113 Query: 145 VVIEGGMTNLER-QQILTEEQYLDALEEFGDE----FDAKMGAEAIQALLKSMDLEQECE 199 +R QQI + + + L + D G IQ + L Sbjct: 114 ---NRNTPEFKRIQQIANKRKRFNELMKLKPMDKCMIDDYTGCGGIQPKISKNQLS--IT 168 Query: 200 QLREELNETNSETKRK---KLTKRIKL----LEAFVQSGNKPEWMILTVLPVLPPDLRPL 252 Q+ NE E K + ++ KRI L F + PEWMILT LPV PP +RP Sbjct: 169 QIFPNSNEIKQEIKAESVLQIFKRISTQDLELLGFDSINSNPEWMILTCLPVPPPHVRPS 228 Query: 253 VPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRR 312 V A DL +I N +++L +P + + ++LQ ++N Sbjct: 229 VMHGLNDKAEDDLTHKLADIIKSNATIQKLSKSGSPQHYLDDMIKILQYHCATYMNNEIS 288 Query: 313 GRAI-TGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKK 371 G + T N R LKSL +KGK+GR R NL+GKRVD+S R+VIT P + + Q G+P+ Sbjct: 289 GVPMSTTKNGRMLKSLRQRLKGKEGRVRGNLMGKRVDFSARTVITPDPTIEIDQVGVPRT 348 Query: 372 MALEL-----FKPFIYGKL-ELRGLATTIKAAKKMVEREEAVVWDI-------LDEV--- 415 +A + PF + ++ EL K V R++ D+ D+V Sbjct: 349 IARNMTVPEKVTPFNFERMNELVMNGPETYPGAKYVLRDDGTRIDLKFLSDRSTDQVQLQ 408 Query: 416 ----IREH-----PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQM 466 I H VL NR P+LH++ + ++ +L+ V YNADFDGD+M Sbjct: 409 YGYTIERHLQDGDVVLFNRQPSLHKMSMMGHRVKVMPYSTFRLNLSVVTPYNADFDGDEM 468 Query: 467 AVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMV 526 +H+P +L+ + E LMM NI++P + P+I QD +L TR V + + M Sbjct: 469 NLHLPQSLQTKTELLELMMVPKNIITPQSHRPLIALVQDTLLAGSKCTRRDVYIEKDVM- 527 Query: 527 LTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTV--GRAILWMIVP 584 + Y +D NG+L LK + G+ + +++P Sbjct: 528 -----------------------MNCLMYLQDFNGQLPVPAILKPKPLWTGKQLFSLLLP 564 Query: 585 KGLPYSI--------------------------------VNQALGKKAISKMLNTCYRIL 612 Y I + L KK++ + I+ Sbjct: 565 SIDYYGISSTHDDEVGDLKHLDDHLPEFDTGIIISNGELLTGILDKKSLGSSHGSLIHII 624 Query: 613 ----GLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIP----EKKHEIISEAEAEVAEI 664 G + F Q + + + G SVGI D + +K EII+ AE EV +I Sbjct: 625 VNDKGTQEGKKFLGQCQHVLNYWLLQHGFSVGIGDTIADGETVKKIEEIINNAEREVKKI 684 Query: 665 QEQFQSGLVTA------GERYNKVID--IWAAAND---RVSKAMMDNLQTETVINRDGQE 713 +Q +GLVTA + + + I+ + AA D V K++ D+ Sbjct: 685 VKQAHNGLVTAEPGRTVEQSFERSINSTLNAAREDAGMHVKKSLKDS------------- 731 Query: 714 EKQVSFNSIYMMADSGARGSAAQIRQL---AGMRGLMAK--PDGSIIET-P--------- 758 NSI M SG++GS I Q+ G + + K P G T P Sbjct: 732 ------NSIKSMVTSGSKGSYLNISQIIACVGQQNVEGKRVPFGFKNRTLPHFSTDDHGP 785 Query: 759 -----ITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTED 812 + ++ GL ++F T G R+GL DTA+KTA +GY+ RRLV +D+ V D Sbjct: 786 ESRGFVANSYLRGLTPQEFFFHTMGGREGLIDTAVKTAETGYIQRRLVKAMEDVKVNYD 844 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 20/36 (55%), Positives = 27/36 (75%) Query: 908 IINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASR 943 ++ GE +G IAAQSIGEP TQ+T+ TFH G +S+ Sbjct: 1050 LVQPGEMVGCIAAQSIGEPATQMTLNTFHNAGVSSK 1085 Score = 43.5 bits (101), Expect = 0.058, Method: Compositional matrix adjust. Identities = 20/40 (50%), Positives = 26/40 (65%) Query: 1323 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362 SF++T VL EAA D L+G+ NV+VG+L P GTG Sbjct: 1392 CSFEQTVEVLVEAAQFSDVDTLKGVSANVMVGKLAPIGTG 1431 >UniRef50_A9CTJ8 DNA-directed RNA polymerase n=1 Tax=Enterocytozoon bieneusi H348 RepID=A9CTJ8_ENTBH Length = 1541 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 217/863 (25%), Positives = 377/863 (43%), Gaps = 130/863 (15%) Query: 19 AIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRL 78 I L SP+ I+ S V PETI P+ +GL R+ K++ Sbjct: 11 GINFGLFSPEEIKKTSVVHVIHPETI--ENGVPKENGLIDLRMGTTEKNF---------- 58 Query: 79 KHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERV 138 +C+ C + GHIEL P HI ++ ++I LL+ ++ Sbjct: 59 -----LCQTCNENMFDC---VGHFGHIELCKPMFHIGYI----TKIKKLLECICFYCSKI 106 Query: 139 LYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKS--MDLEQ 196 F+ T E IL + + D+ E G+ K+G Q ++K M+L Sbjct: 107 KDFKLLKEKTKNYTLEEAWNILKTKTFCDSENEKGE----KIGCCNKQPIIKKEGMNLIA 162 Query: 197 ECEQLREELNETNSETKRKKLTKRIKLLE-AFV--QSGNKPEWMILTVLPVLPPDLRPLV 253 + +E + K + K+I E F+ ++PE M++TVL V PP +RP + Sbjct: 163 FMKGNDDEGKVILNGEKVCNIFKKIDASELKFIGFNVNSRPENMLITVLLVTPPSVRPSI 222 Query: 254 PLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRG 313 DG R + DL Y ++ N LK+ AP+ I+R+ +++LQ + L++N G Sbjct: 223 LTDGLR-SEDDLTHKYADIVKSNACLKKYEQDGAPNHIIRDYEQLLQFHLSTLINNEISG 281 Query: 314 RAITGSNK-RPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKM 372 + I RP+KS++ +KGK+GR R NL+GKRVD+S RSVIT P + L + G+P + Sbjct: 282 QPIAMQKSGRPIKSISARLKGKEGRIRGNLMGKRVDFSARSVITPDPAIELDEVGVPLHI 341 Query: 373 AL--------------ELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDE---V 415 A+ L K G E G I+ + ++ + + +D+ E + Sbjct: 342 AMIQTFPEKVNSININTLQKMVNNGPTEYPGANYVIRNDGQRIDLKYS-RFDLKLEKGFI 400 Query: 416 IREHP-----VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHV 470 + H VL NR P+LH++ + ++ K +L+ V + YNADFDGD+M +H+ Sbjct: 401 VERHMLDNDIVLFNRQPSLHKMSMMGHRAKIMNNKTFRLNLSVTSPYNADFDGDEMNLHM 460 Query: 471 PLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVL-- 527 P + + E L + NI+SP + +P+I QD ++G+ T ++ K E M L Sbjct: 461 PQSYNTKSELINLASVSRNIISPQSNKPVIGIVQDTLVGVRLFTLKNTFFNKRETMNLLF 520 Query: 528 ---TGPKEAERLYRSGLASLHARVK----------VRITEYEKDANGELVAKTSLKDTTV 574 T ++ + + + +H ++ V ++ + G ++ ++L T+ Sbjct: 521 TLDTLEEKVMEIINNPILIIHNKISLWSGLQIFSAVFPNKFNFNYKGVVIKNSNLITGTL 580 Query: 575 GRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAAR 634 + I GL + I N G +K +N R++ F + Sbjct: 581 SK-ITCGATHGGLIHVICND-YGCLEATKFINNVQRLIN--------------HFMFHIN 624 Query: 635 SGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAAN-DRV 693 S ++GI D +I EI E +S + A +++I++ +++ Sbjct: 625 S-FTIGIGDTIIN--------------PEIIEDCKSNIANAIHNVDELINMAKLGKLEKL 669 Query: 694 SKAMMDNL---QTETVINRDGQEEKQVSF-NSIYMMADSGARGSAAQIRQLAGMRG---- 745 ++N + ++N+ + +++ N++ M SG++GS I Q+ G Sbjct: 670 PGLTIENTFESKVNLILNKARDYKGEITLCNNMNAMILSGSKGSKINIAQMTSCVGQQNV 729 Query: 746 ---------------LMAKPDGSIIETPITAN-FREGLNVLQYFISTHGARKGLADTALK 789 K D S I +N + G+ +++ G R+GL DTA+K Sbjct: 730 EGKRIPFGFEKRTLPHFQKFDYSAISRGFISNSYLTGMTPQEFYFHAMGGREGLIDTAIK 789 Query: 790 TANSGYLTRRLVDVAQDLVVTED 812 TA +GY+ RRLV +D VV D Sbjct: 790 TAETGYIQRRLVKAMEDAVVRSD 812 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 18/31 (58%), Positives = 24/31 (77%) Query: 912 GEAIGVIAAQSIGEPGTQLTMRTFHIGGAAS 942 E +G +AAQS+GEP TQ+T+ TFH+ G AS Sbjct: 988 NEMVGTLAAQSVGEPATQMTLNTFHLAGVAS 1018 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 3/58 (5%) Query: 1308 GITKASLATE---SFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362 GIT+ + E S + ASF+ET +L EAA + + G+ EN+++G+L P GTG Sbjct: 1289 GITRHGVNREIKASALKRASFEETVDILLEAAATAEENPAHGITENIMMGQLAPLGTG 1346 >UniRef50_B1L739 DNA-directed RNA polymerase n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L739_KORCO Length = 1324 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 221/901 (24%), Positives = 389/901 (43%), Gaps = 148/901 (16%) Query: 215 KKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVIN 274 +K++ LL F +PEW +LTVL V P RP + L+ G + DL + ++ Sbjct: 202 EKISDDDSLLIGFDPKKARPEWAVLTVLLVPPLTARPSIYLETGERSEDDLTHILVEILK 261 Query: 275 RNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGR--AITGSNKRPLKSLADMIK 332 N +L + AP +V +E LQ V +N G A+ +RPLKSL + Sbjct: 262 ANRKLNNSKKVGAPVSMVESEWDHLQYWVSVFFNNATAGMPVAMQKGTRRPLKSLFQRLS 321 Query: 333 GKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYG--------K 384 GK+GR R+NL+GKRV++S R+VI+ P + + + G+P ++A+ L P + Sbjct: 322 GKEGRLRKNLIGKRVNFSARTVISPDPMIDIDEVGVPVEIAMVLTVPEYVNENNIEKMKE 381 Query: 385 LELRGL-----ATTIKA------AKKMVER----------EEAVVWDILDEVIRE-HPVL 422 L +RG A I+ + K+++R E+ DI++ + + V+ Sbjct: 382 LVMRGPDEYPGANAIRKGGVTPISLKILQRKGKDALREAAEQLEPGDIVERHLMDGDYVI 441 Query: 423 LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARA 482 NR P+LH+L + ++ G +LHP VC YNADFDGD+M +HVP L+ +E R Sbjct: 442 FNRQPSLHKLSMLGHRVKVLPGATFRLHPAVCVPYNADFDGDEMNLHVPQILDGSVEVRE 501 Query: 483 LMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVLTGPKEAERLYRSGL 541 LM N+LSP G II QD + LY +T +D + K E + L R+G+ Sbjct: 502 LMGVKYNMLSPRTGGSIIGARQDFITALYMITKKDALFDKNEATRI--------LSRAGI 553 Query: 542 ASLH----ARVKVRITEYE-------KDANGELVAKTSLK------DTTVGRAILWMIVP 584 L R K T + KD N E +AK+++K + +G + + Sbjct: 554 TQLPEPAIKRPKRLWTGKQLISMLLPKDLNFEGIAKSAVKASECKDPSCLGDGYVLIREG 613 Query: 585 KGLPYSIVNQALGK--KAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGID 642 K L + + +G K +++ R G + F ++++ G + Sbjct: 614 KLLSGVLDDNIVGTLVKGRLTLIDVLIRDYGEDVAIEFLNKLLKIASKEVLLYGITNSPK 673 Query: 643 DMVIPEKKHEIISEAEAEVAEIQEQFQSGL--VTAGERYNKVIDIWAAANDRV----SKA 696 +++IPE EA+ E+ EI + + + + I I+ + + + Sbjct: 674 ELMIPE-------EAKREIEEIYSNMKEEVTRLIRSRPITRKITIYRTKEELLRIMREEQ 726 Query: 697 MMDNLQTETVINRDGQEEKQVS-----FNSIYMMADSGARGSAAQIRQLAGMRGLM---- 747 M++ +T+ + G+ +S +++ +MA +GARGS A + Q+ G G Sbjct: 727 MLEFDIVQTMDSFWGKVSSVISKYIDPKSNVSIMAKTGARGSMANLAQIVGQVGQQKVKT 786 Query: 748 --------AKPDGSIIE-----------TP-----ITANFREGLNVLQYFISTHGARKGL 783 +P + +P + ++ GLN ++ +R+ L Sbjct: 787 RIGFVLTSGRPRKGYKDRVLSYFQRGDLSPEARGFVKNSYVSGLNPAEFIFHAMSSRESL 846 Query: 784 ADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLR------- 836 D +T +SGY RR+ + +D+ V+ D+ + GGD +P + Sbjct: 847 IDKGRRTEDSGYFYRRVANSLKDVYVSYDETVRDSMGHIIQFKFGGDGYDPTKLFRNEPV 906 Query: 837 --DRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGV 894 +R++ + E+ + + D + LL E L + DA+ + + Sbjct: 907 NLERIIRKYVKEERKRGVSKDKI---EELLKEANLPL---SLADAIHGARPKESELKEII 960 Query: 895 CAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGG--------------- 939 G + A+ ++ IG+I+AQSI EP TQ+ +RTFH G Sbjct: 961 AELKEGFERAKVEVLT---PIGLISAQSIAEPTTQMVLRTFHAPGLLAMDVTHGVERFKE 1017 Query: 940 ---AASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYK 996 AS + I +K K +SN++ ++ + +L + LI+E+ +Y+ Sbjct: 1018 LVFYASTSTPTMKIYLKQKCQEDISNLRKILRNLKELRVRD------LIEEYAIDNFNYR 1071 Query: 997 V 997 + Sbjct: 1072 L 1072 >UniRef50_P09846 DNA-directed RNA polymerase subunit A' n=4 Tax=Methanobacteriaceae RepID=RPOA1_METTW Length = 865 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 228/881 (25%), Positives = 377/881 (42%), Gaps = 160/881 (18%) Query: 20 IKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLK 79 I L SP+ IR S ++ P+T + + P + L R+ Sbjct: 11 INFGLMSPEDIRKMSVAQIVTPDTYDEDGY-PIENELMDPRL------------------ 51 Query: 80 HRGVI-----CEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRD 134 GVI C CG + + G I LA P H+ F + I +L R Sbjct: 52 --GVIGSSLRCRSCGAKGGECP---GHFGSINLARPVIHVGFADT----IHKILSSICRK 102 Query: 135 IERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDL 194 R+L E+ + RQ+IL + ++L E + AEA + + Sbjct: 103 CSRILLTETEI-------QDYRQRILEAMEREESLTPIIKE----IYAEARRDRCPHCEE 151 Query: 195 EQECEQLRE-------ELNETNSETKRK--KLTKRIKLLEAFVQSGNKPEWMILTVLPVL 245 EQE +L + + T SE + + ++T LL +PEWM+LTVLPV Sbjct: 152 EQEEIKLDKPVSIVEGDYKLTPSEVRERLERITDNDSLLLGVNPEVARPEWMVLTVLPVP 211 Query: 246 PPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDA 305 P +RP + L+ G + DL ++ N RLK ++ AP +IV + +LQ V Sbjct: 212 PVTVRPSITLETGERSEDDLTHKLVDILRINQRLKENMEAGAPQLIVEDLWELLQYHVTT 271 Query: 306 LLDNGRRG----RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYL 361 DN G R +G RPLK+LA +KGK+GRFR NL GKRV++S R+V++ P + Sbjct: 272 YFDNEASGVPPARHRSG---RPLKTLAQRLKGKEGRFRSNLSGKRVNFSARTVVSPDPNV 328 Query: 362 RLHQCGLPKKMALELFKPFIYGKLELRGLATTI------------------KAAKKMVER 403 +++ G+P+ +A E+ P + + + I + + E Sbjct: 329 SVNEVGVPELIAKEVTVPVYVTEWNIDRMKEHIENGPDVHPGANYVIRPDGRKIRAYNET 388 Query: 404 EEAVVWDILDEVIREHP------VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAY 457 ++ V+ ++ I E VL NR P+LHR+ + A E ++ K +L+ VC Y Sbjct: 389 KDVVLENLKPGYIVERHLKDGDIVLFNRQPSLHRMSMMAHEVRVLPYKTFRLNLCVCPPY 448 Query: 458 NADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLY-YMTRD 516 NADFDGD+M +HV T E++ EA+ LM ++ILSP +D+ G+Y ++++ Sbjct: 449 NADFDGDEMNMHVFQTEESRAEAKTLMRVQDHILSPR--------FRDLSSGVYTTISQE 500 Query: 517 CVNAKGEGM--VLTGPKEAERLYRSGLASLHARVKVRITEYE-------KDANGELVAKT 567 +++G+ + V + P + + G A R T E D N +A+ Sbjct: 501 HTSSQGKRLFSVRSRPPDPQ----EGRAPPPDREGREWTVKEIFSMVLPDDLNMVYLAEI 556 Query: 568 SLKDTTV----GRAILWMIVPKG-LPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFAD 622 K ++++ G L ++++ K+L+ + G F D Sbjct: 557 CRKCDECLEMDWENDAYVVIENGQLITGVIDEKAYGAFAGKILDQIVKEYGSDAAKEFLD 616 Query: 623 QIMYTGFAYAARSGASVGIDDMVIPEKKHEIIS----EAEAEVAEIQEQFQSGLVT--AG 676 A +G + +D IPE+ E I AEA V ++ E +++G + G Sbjct: 617 SATKLAIAGIMHAGFTTSTNDEEIPEEAKERIEAHLRNAEARVDQLIEAYENGELEPLPG 676 Query: 677 ERYN-----KVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGAR 731 K++ + A D+ + E+ + D N +MA +GAR Sbjct: 677 RSLEETLEMKIMQVLGEAKDKSGEI------AESYFDMDE--------NHAVIMALTGAR 722 Query: 732 GSAAQIRQLAGMRGLMAKPDGSIIE------TP--------------ITANFREGLNVLQ 771 G+ + Q+ G + G I P + ++++E +L+ Sbjct: 723 GAMLNLTQITACVGQQSVHGGRITRGYDNRTLPHFKKGELGAKSRGFVHSSYKEDSILLE 782 Query: 772 YFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTED 812 + G R+GL DTA++TA SGY+ RRLV+ QDL V E+ Sbjct: 783 FM----GGREGLVDTAIRTAQSGYMQRRLVNALQDLTVDEN 819 >UniRef50_A6G6S9 DNA-directed RNA polymerase n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G6S9_9DELT Length = 333 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 120/286 (41%), Positives = 155/286 (54%), Gaps = 46/286 (16%) Query: 24 LASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGV 83 L P IR+ S GEV+KPETIN RT KPER GL CARIFGP +D CLCGKY+ +HRG Sbjct: 33 LMGPAQIRARSRGEVEKPETINARTRKPERGGLHCARIFGPTEDLRCLCGKYQGERHRGT 92 Query: 84 ICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFES 143 CEKCGVEV + VRRERM H+EL +P H F ++ +GL D+E++ Sbjct: 93 TCEKCGVEVLPSAVRRERMAHVELVAPVVHPLFAPAIARLLGL-------DLEQLGALGE 145 Query: 144 YVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLRE 203 G+ ++R E D +G AI L S+D++ Sbjct: 146 GAARFLGVGRIDRDA----------------EVDT-LGGRAIHDALASVDMQ-------- 180 Query: 204 ELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATS 263 R + L ++ P + L VLPVLP LRP+ + GR +S Sbjct: 181 ----------RMFADDALAPLAEYL----TPTDLTLAVLPVLPAGLRPVEVGNDGRVTSS 226 Query: 264 DLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDN 309 DLND YRR++NRNNRL+RL++L AP II+ NE R LQ AVDAL+ N Sbjct: 227 DLNDHYRRIVNRNNRLRRLVELEAPAIILHNEYRFLQGAVDALVHN 272 >UniRef50_B9GIK9 DNA-directed RNA polymerase n=2 Tax=Magnoliophyta RepID=B9GIK9_POPTR Length = 1394 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 236/874 (27%), Positives = 357/874 (40%), Gaps = 180/874 (20%) Query: 233 KPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLK-RLLDLAAPDII 291 +PE +I+T + V P +RP V +G + +D+ + +++I N +L+ LL+ I Sbjct: 248 RPEKLIITTIAVPPISIRPSVFTEGSQSNENDITERLKQIIQFNAKLRLELLEGRRTGIK 307 Query: 292 VRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSG 351 LQ V +++ R + RPL + GKQGRFRQNL GKRV+++G Sbjct: 308 YLIGWDELQAVVTLYINSDVR-IPLDMQVGRPLSGFVQRLTGKQGRFRQNLAGKRVEFTG 366 Query: 352 RSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWD- 410 R+VI+ P L++ + +P MA L P + L + V + Sbjct: 367 RTVISPDPNLKITEVAIPIHMARILTYPERVTHHNIEKLRQCVNNGSYKYPGARMVTYPD 426 Query: 411 -------------ILDE-----VIREH-----PVLLNRAPTLHRLGIQAFEPVLIEGKAI 447 I +E ++ H VL NR P+LHR+ I ++ + + Sbjct: 427 GSSKMLTGNYRKRIAEELKSGCIVHRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTL 486 Query: 448 QLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVV 507 + + VC YNADFDGD+M +HVP T EA+ EA LM NN+ +P NGE ++ +QD + Sbjct: 487 RFNESVCNPYNADFDGDEMNMHVPQTEEARTEAFLLMGVQNNLCTPKNGEILVASTQDFL 546 Query: 508 LGLYYMTRD-----------CVNAKGEGMVLTG--------PKE---AERLYRSGLASLH 545 + +TR + +GM L P E ++L+ S L H Sbjct: 547 TSSFLITRKDTFYDRAAFSLMCSYMNDGMDLVDLPTPSVLKPIELWTGKQLF-SVLLRPH 605 Query: 546 ARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPY----SIVNQALGKKAI 601 A V+V + K+ N K K+ M G Y +++ LGK + Sbjct: 606 ANVRVYVNLILKEKNYSRPNKEHKKERET------MCPNDGYVYFRNSELISGQLGKATL 659 Query: 602 SK-MLNTCYRILGLKPTVIFADQIMYTGFAYAAR----SGASVGIDDMVIPEKKHEIISE 656 + Y IL A M +AR G S+GIDD V P KK +I E Sbjct: 660 GNGNKDGLYSILLRDYNAYAAATCMNRLAKLSARWIGNHGFSIGIDD-VQPGKK--LIDE 716 Query: 657 AEAEVAEIQEQFQSGLVTAGERY-NKVIDIWAAANDRVSKAM--MDNLQTETV--INRDG 711 + ++ G R+ NK+I + + L+TE +N+ Sbjct: 717 ------------KGKTISNGYRHCNKLIADYNGGRLALKSGCDATQTLETEITERLNKLR 764 Query: 712 QEEKQVSF------NSIYMMADSGARGSAAQIRQLAGMRGLMA-----KPDGSI------ 754 +E V NS +M+ G++GS I Q+ G + PDG I Sbjct: 765 EEAGDVCMKELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGSRAPDGFIDRSLPH 824 Query: 755 ----IETP-----ITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQ 805 +TP + +F GL+ ++F T G R+GL DTA+KTA++GY+ RRL + Sbjct: 825 FPRKSKTPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMARRLSKGLE 884 Query: 806 DLVVTED----DCGTHEGIM--------MTPVIEGGDVKEPLR-DRVLGRVTA------E 846 DL V D D G GI+ + P I G PL DR+ +V A + Sbjct: 885 DLCVQYDNTVQDAGG--GIVQFLYGDDGLDPAIMEGKAGVPLNFDRLFMKVKATCGAEED 942 Query: 847 DVLKPGTADILVPRNTLLHEQWCDLLEENS----------------------VDAVKVRS 884 + L P +V L H D + S VD V+V + Sbjct: 943 EYLSPSDISNIVQSLLLKHNGTLDGICSESFRKSLSSFLGDQAKRLECLMKLVDGVEVEN 1002 Query: 885 VVSCDTDFGVCA-------------------------HCYGRDLARGHIINKGEAIGVIA 919 + G+ C R + + I G AIG I Sbjct: 1003 FENIKNVEGLTGISKNTEKIAQKVSGITEKQLEVFLKTCLDRYVWKR--IEPGTAIGAIG 1060 Query: 920 AQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVK 953 AQSIGEPGTQ+T++TFH G AS + ++K Sbjct: 1061 AQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIK 1094 >UniRef50_Q8TXI8 DNA-directed RNA polymerase n=1 Tax=Methanopyrus kandleri RepID=Q8TXI8_METKA Length = 953 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 244/943 (25%), Positives = 378/943 (40%), Gaps = 187/943 (19%) Query: 4 LLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR--I 61 L++ + Q + I + PD IR S EV PET + + P G+ R + Sbjct: 3 LMEEPRVQDPPKYVKRILFGILPPDKIRKMSKVEVTSPETYDEDGY-PIEGGVMDTRMGV 61 Query: 62 FGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLP 121 P G+ C CG + GHIELA P H + + + Sbjct: 62 IDP-----------------GLRCRTCGQPAGRCP---GHFGHIELARPVLHPRYAERI- 100 Query: 122 SRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMG 181 +D+ R E G L +I E YL + E G + Sbjct: 101 -----------KDVLRA------TCPECGRVKLPEDEI---ESYLREVRE-GIRPVKSVA 139 Query: 182 AEAIQALLKSMDLEQECEQLR--------------EELNETNSETKRKKLTKRIKLLEAF 227 AE I K + R E L + +K+ + F Sbjct: 140 AEVIDRAEKRESCPHCGAESRKITYQKPTTIMMDDERLWPVDIRAWLEKIPDEDVEILGF 199 Query: 228 VQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAA 287 +PEW +LTVLPV P +RP + L+ G A DL ++ N RLK L+ A Sbjct: 200 HPERARPEWAVLTVLPVPPVTMRPSIILETGERAEDDLTHKLVDIVRVNLRLKESLEAGA 259 Query: 288 PDIIVRNEKRMLQEAVDALLDNGRRG----RAITGSNKRPLKSLADMIKGKQGRFRQNLL 343 P+ I+ ++ +LQ V +DN G R TG +PLK + +KGK+GRFRQNL Sbjct: 260 PEPIIEDQWDLLQYHVTTYIDNEIGGVPVARHRTGG--KPLKGIVQRLKGKEGRFRQNLA 317 Query: 344 GKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI-------KA 396 GKRV++S RSVIT P L G+P+ +A EL P + + L + Sbjct: 318 GKRVNFSARSVITPDPELDPFTLGVPEAIAKELTVPERVTEWNIDRLRKLVLNGPNKHPG 377 Query: 397 AKKMVEREEAVVWDILDE-------------VIREH-----PVLLNRAPTLHRLGIQAFE 438 A +V+R+ + + I DE V+ H PV+ NR PTLH F Sbjct: 378 ANYVVKRDGSRI-RITDENKEKLAEDLEPGDVVERHLMDGDPVMFNRQPTLHIQSELGFR 436 Query: 439 PVLIEGKAIQLHPLVC---AAYNADFDGDQMAVHVPLTLEAQLEARALM-MSTNNILSPA 494 ++ GK +L P C +NADFDGD+M +HVP + EA+ E R LM ++ P Sbjct: 437 VRVMPGKTFRL-PAACYMGVGFNADFDGDEMNLHVPQSEEARAEVRELMGCYVYHLWPPK 495 Query: 495 NGEPII--VPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRI 552 NG + P + ++G++ ++R + + +L K+ + L K R Sbjct: 496 NGHEDVRNSPIHEAIVGIHLLSRAWIPLREAYQLLEEVKKEGDWFEPTEVKLKPEAKYRR 555 Query: 553 TEYEKDANGELVAKTSLKDTTV--GRAILWMIVPKGLPYSIVNQAL-------GKKAISK 603 E+ E V + + GR +L + +P L + A+ GK I K Sbjct: 556 GFEEEIHELEFVCGQPREGEPLVTGRQLLSVFLPDWLDRVELENAVCPDDEEHGKVVIEK 615 Query: 604 ----------------MLNTCYR--------------ILGLKPTVIFADQIMYTGFAYAA 633 M +R + T+ D+I G + Sbjct: 616 GRIVRGFLDEKTVHGIMTEIVHRYAAREVARGESYPWFKAAETTLRAMDKIGRLGLRFVT 675 Query: 634 RSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAAN-DR 692 R G ++GID+ E +E + + + + ++ GER + ++ N R Sbjct: 676 RYGFTLGIDEF---EDIYERFRDEVERLCDEAAKKAKEIIERGERRLQELEEHETCNRSR 732 Query: 693 VSKAMM--DNLQTET--VINRDGQEEKQV------SFNSIYMMADSGARGSAAQIRQLA- 741 + + M N+++E ++N+ E +++ FN Y+M +SGARGS I ++A Sbjct: 733 IERGEMLERNIESEVMAILNQPRVETERLLKKHRDLFNPAYIMPESGARGSITNIARMAL 792 Query: 742 --------GMRGLMAKPDGS-IIE-----------TP---------------ITANFREG 766 G R AK + I+E TP + + F EG Sbjct: 793 IGGQQAVMGERPHRAKHNTEHIMEKIVNYSYTDRVTPHFEKSLIPGVKEGGFVRSGFFEG 852 Query: 767 LNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVV 809 L++++YF+ R+GL D +TA+SGYL RR V A DL+V Sbjct: 853 LDMVEYFLHAMSGREGLIDKGFRTADSGYLHRRYVTTALDLIV 895 >UniRef50_Q8SS15 DNA-directed RNA polymerase n=2 Tax=Apansporoblastina RepID=Q8SS15_ENCCU Length = 1395 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 213/796 (26%), Positives = 363/796 (45%), Gaps = 138/796 (17%) Query: 234 PEWMILTVLPVLPPDLRPLVPLDGGR---FATSDLNDLYRRVINRNNRLKRLLDLAAPDI 290 P ++ LPV+P RP++ LDG + F T LND+ R + L D+ Sbjct: 250 PGMFFISNLPVIPNRFRPMIVLDGKKAENFQTLYLNDILRVSV-----------LVTKDL 298 Query: 291 IVRNEKRMLQEAVDALLDNGR-----RGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGK 345 E LQ A+ + DN R R + +K+ +++ K G FR+N++GK Sbjct: 299 SYWPE---LQAAILSSFDNKNISKWSRTRMVPPGHKQ-------ILERKDGLFRRNIMGK 348 Query: 346 RVDYSGRSVITVGPYLRLHQCGLPKKMALEL--------FK-----------PFIYGKLE 386 RV+++ R+VI+ P L + G+P A L F P G L Sbjct: 349 RVNFAARTVISPDPNLETREIGIPLVFAEALTFPERAASFNVDRLKKAVVNGPTYPGSLY 408 Query: 387 LRGLATTIKAAKKMVEREEAVVWDILD--EVIREH-----PVLLNRAPTLHRLGIQAFEP 439 L+ + A E+ A+ +LD +V+ H VL+NR PTLHR I A + Sbjct: 409 LQDGDVMLSLAHMPDEKRYALANQLLDGKKVVWRHLVDGDVVLMNRQPTLHRPSIMAHKC 468 Query: 440 -VLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEP 498 VL + + +++H C +YNADFDGD+M VH P ++ E+R ++M+ +N L P NG+P Sbjct: 469 RVLRKERTLRMHYANCKSYNADFDGDEMNVHFPQNYASEAESRHIVMNDSNYLVPTNGKP 528 Query: 499 I--IVPSQDVVLGL------YYMTRDCVNAKGEGM-----VLTGPK--EAERLY--RSGL 541 I +V V++ + ++ D G+ VL P + RLY R + Sbjct: 529 IRGLVQDHIVIVTVLTMKDSFFSEEDYFTLVNAGLSDRRIVLDRPCIVKPARLYSGRQVI 588 Query: 542 ASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAI 601 +++ + + + E + N V K + ++ + R + + +G +IV L K ++ Sbjct: 589 STILKNLGL-VVNIEIETN---VPKNAWREHSEERILR---IREG---NIVTGILDKNSL 638 Query: 602 ----SKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVI----PEKKHEI 653 +++ C I G + I + G Y G ++GIDD+++ +K+ E+ Sbjct: 639 GPTFKSLIHACGEIKGFATSNDLLTYIGWVGNRYLLMYGFTIGIDDLLLDKEADKKRREV 698 Query: 654 ISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETV-INRDGQ 712 + + E E+Q ++ V A + D A D V + M+++ +E V ++ Sbjct: 699 VRVKDQEAKELQRRY----VEANPDFYLYADKKAYL-DSVMRTEMNSVTSEIVKVSVPSG 753 Query: 713 EEKQVSFNSIYMMADSGARGSAAQIRQLAGMRG----------LMAKPD-----GSIIET 757 +K N++ ++ +G++GS + Q++G G +MA ++ + Sbjct: 754 LQKSFPENNMELIIATGSKGSIVNLSQISGALGQQELEGQRVPIMASGKTLPCFAALDPS 813 Query: 758 P-----ITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTED 812 P I F G+++ QYF R+GL DTA+KTANSGYL R L+ ++ V E Sbjct: 814 PSSGGYIYHRFLTGIDLPQYFFHCMAGREGLIDTAIKTANSGYLQRCLIKHMEEAKV-EY 872 Query: 813 DCGTHEGIMMTPVIEGGDVKEPLRDRVL--GRVTAEDVLKPGTADILVPRNTLLHEQWCD 870 D G + + G D + + L +VL G + +V + L +++ D Sbjct: 873 DMSVRIGKRVIQFMYGEDGLDCTKSSYLDDAEFFKRNVLLFGKSASIVSK---LEDRYKD 929 Query: 871 LLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHII---NKGEAIGVIAAQSIGEPG 927 L ++K R + D R LA +I + GE++GVIAAQS+GEP Sbjct: 930 FL------SLKFRKQIDLLDDE------LRRFLADRYICSLADPGESVGVIAAQSVGEPS 977 Query: 928 TQLTMRTFHIGGAASR 943 TQ+T+ TFH+ G ++ Sbjct: 978 TQMTLNTFHLAGVGAK 993 >UniRef50_Q84KP6 DNA-directed RNA polymerase n=6 Tax=Eukaryota RepID=Q84KP6_CYAME Length = 1819 Score = 199 bits (506), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 216/899 (24%), Positives = 377/899 (41%), Gaps = 124/899 (13%) Query: 3 DLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIF 62 DL F A+ K A++ L SPD +R S V+ + + P+ G+ R+ Sbjct: 4 DLQTFSSAELKA--VGAVQFGLLSPDELRRLSVVRVEY--DVAFERGVPKAGGVLDPRLG 59 Query: 63 GPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPS 122 +++ C CE ++ GHIEL P ++ L ++ Sbjct: 60 AIDRNFPC------------ATCEGSSIDCPG------HFGHIELVKPVFNVLMLSTVLK 101 Query: 123 RIG--------LLLDM-------------PLRDIERVLYFESYVVIEGGMTNLERQQILT 161 + LL+D P++ + V + + GG + +Q++ Sbjct: 102 TLRCVCYYCSRLLVDGSDSRMLRAARIKDPVKRFQAVFQLCNGTRVCGGGADSSEEQLML 161 Query: 162 EEQYLDALEEFGD------EFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRK 215 L+A E G + + ++ L + D E + ++EL + + Sbjct: 162 PAAVLEARERIGKPREGCGNLQPHVTRDGLRILAEFPDAEAFAAERKQELAAERVQQIFR 221 Query: 216 KLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINR 275 + L F ++PEWM+L+VLPV PP +RP + +D DL +I Sbjct: 222 HIRDEDLELLGFHPRFSRPEWMVLSVLPVPPPHVRPSIQMDAVSRGEDDLTFKLGDIIKA 281 Query: 276 NNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRA-ITGSNKRPLKSLADMIKGK 334 NN L+RL AP ++R + +LQ V ++N G T + RPLKS+A +KGK Sbjct: 282 NNALQRLEAEGAPAHVIREQYVLLQFHVATFMNNDLPGMPRATLRSGRPLKSIAQRLKGK 341 Query: 335 QGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI 394 +GR R NL+GKRV++S R+VIT P L L + G+P+ +A+ L P + + L + Sbjct: 342 EGRVRNNLMGKRVNFSARTVITADPQLALDEVGVPRSVAMTLTYPEVVTPYNIDRLWEAV 401 Query: 395 K-------------------AAKKMVEREEAVVWD----ILDEVIREHPVLLNRAPTLHR 431 + A + V R +V + + ++ VL NR P+LHR Sbjct: 402 RNGPNAYPGALFVIRNDGKRIALQFVRRSADIVLEPGCVVERHLLNGDLVLFNRQPSLHR 461 Query: 432 LGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNIL 491 + I ++ +++ + YNADFDGD+M +HVP + E + E + LM NI+ Sbjct: 462 MSIMGHRVRILPYSTFRMNLSATSPYNADFDGDEMNLHVPQSEEVRAEIKELMAVPKNIV 521 Query: 492 SPANGEPIIVPSQDVVLG-LYYMTRDCVNAKGE--GMVLTGPKEAERLYRSGL------- 541 SP P++ QD +LG + + RD + ++L P R+ + Sbjct: 522 SPQANRPVMGIVQDSLLGCMLFTLRDTFLEEDTVFNLLLHLPHFDGRIPAPAILKPRPLW 581 Query: 542 --ASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKK 599 + + + E+ +NG + ++ + R +I L IV++ Sbjct: 582 TGKQIFSLLLPDGVNLERLSNGHPDHERTIMTPSDTRV---LIQNGELITGIVDKRTVGS 638 Query: 600 AISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKK----HEIIS 655 + +++ ++ G + T I + ++G S+GI D + + I Sbjct: 639 SAGSLIHVTWKESGPERTSQLISDIQLLINYWLMQNGMSIGIGDCIADAHTMAAINRTIQ 698 Query: 656 EAEAEVAEIQEQFQSGLVTAGERY--NKVIDIWAAANDRVSKAMMDNLQTETVINRDGQE 713 EA+ EV ++ Q G + ER +++ + A +RV + D + Sbjct: 699 EAKDEVRQLIRLAQEGRL---ERQPGKTMLESFEACVNRVLNSARDKAGGFA-------Q 748 Query: 714 EKQVSFNSIYMMADSGARGS---AAQIRQLAGMRGLMAK--PDG--------SIIE--TP 758 E + N+I M +G++GS +QI G + + K P G +++ +P Sbjct: 749 ESLLPSNNIKRMVSAGSKGSFINVSQIVACVGQQNVEGKRIPYGFRRRTLPHFVVDDLSP 808 Query: 759 ITANFRE-----GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTED 812 F E GL + F G R+GL DTA+KTA +GY+ RRL+ +D+ + D Sbjct: 809 EARGFVENSYLRGLTPEEVFFHAMGGREGLIDTAVKTAETGYIQRRLMKAMEDIRIEYD 867 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 17/32 (53%), Positives = 25/32 (78%) Query: 912 GEAIGVIAAQSIGEPGTQLTMRTFHIGGAASR 943 GE +G +AAQS+GEP TQ+T+ TFH G +++ Sbjct: 1075 GEMVGAVAAQSLGEPATQMTLNTFHFAGVSAK 1106 >UniRef50_Q7X881 DNA-directed RNA polymerase n=6 Tax=Magnoliophyta RepID=Q7X881_ORYSJ Length = 1383 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 227/883 (25%), Positives = 357/883 (40%), Gaps = 179/883 (20%) Query: 231 GNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSD-LNDLYRRVINRNNRLKRLLDLAAPD 289 G++PE +I+T + V P +RP V + GGR + D + + + + N N+ LK L Sbjct: 238 GDRPEKLIVTEIAVPPVPIRPSVFVAGGRMSNEDSITVILKSIANTNSILKENLQTGGQF 297 Query: 290 IIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDY 349 + + + LQ V +++ ++ S R L +KGK GRFR NL GKR +Y Sbjct: 298 MKCFDCWQHLQLQVVEYINSD--APSLPESQHR---GLVQRLKGKTGRFRGNLSGKRTEY 352 Query: 350 SGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI--------------- 394 +GR+VI+ P LR+ + +P MA L P + L I Sbjct: 353 TGRTVISPDPNLRITEVAIPILMARVLTYPERVSYYNIEKLRQCIRNGPHKHPGANFIIQ 412 Query: 395 ----KAAKKMVEREEAVVWDILDEVIREH-----PVLLNRAPTLHRLGIQAFEPVLIEGK 445 K K +R A V+ H VL NR P+LHR+ I + ++ + Sbjct: 413 PDGTKLHLKYCDRRIAARDLKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWR 472 Query: 446 AIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQD 505 ++ + VC YNADFDGD+M +HVP T EA+ EA LM NN+ +P NGE ++ +QD Sbjct: 473 TLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQD 532 Query: 506 VVLGLYYMTRD-----------CVNAKGEGM---------------VLTGPKEAERLYRS 539 + + +TR + G+ M + TG + L R Sbjct: 533 FLTSSFLVTRKDNFYDRSSFSLLCSYLGDAMENIDLPTPALIKPIELWTGKQLFSVLVRP 592 Query: 540 GLAS---LHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQAL 596 + L+ VK +I + K + E A ++ + L + L Sbjct: 593 NACTKVFLNLTVKEKIYKTPKGSTLEPEAMCP------NDGFVYFRNSELLSGQVGKATL 646 Query: 597 GKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDM-----VIPEKKH 651 G M +T R +++ + G S+G+DD+ + EKK Sbjct: 647 GNGNKDGMFSTLVRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEHLNQEKKM 706 Query: 652 EI------ISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTET 705 +I + A ++ + Q G A + + + K M+ L Sbjct: 707 KIDGGYKDCHDLIASYSKGALRLQPGCNAAQTLEQSITRVLNEIREEAGKVCMNTLHWR- 765 Query: 706 VINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMA-----KPDGSIIET--- 757 NS +M+ G++GS I Q+ G + P+G I T Sbjct: 766 --------------NSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRTLPH 811 Query: 758 -PITA-----------NFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQ 805 PI + +F GL ++F T G R+GL DTA+KTA +GY++RRL+ + Sbjct: 812 FPINSKTPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLE 871 Query: 806 DLVVTEDDC--GTHEGIM--------MTPV-IEGGDVKEPLRDRVLGRVTA------EDV 848 DL V D GI+ M P +EG D K D++ +V A ++ Sbjct: 872 DLSVFYDQTVRNASGGIVQFLYGDDGMDPAKMEGKDGKPLNLDQLFMKVMATCPQRGQNT 931 Query: 849 LKPGTADILVPRNTLLHE--------------QWCDLLEENSVDAVK-VRSVVSCDTDF- 892 L PG +IL N L E Q E+ + +K R + D D Sbjct: 932 LSPG--EILQILNDKLSEHDASSDDGCSEKFKQLLTYFLEDRIKLLKSTRRALLLDEDHV 989 Query: 893 ---------GVCAHCYGRD-----------LARGHI--INKGEAIGVIAAQSIGEPGTQL 930 + A+ G L+R H+ I G +IG I AQSIGEPGTQ+ Sbjct: 990 GERHSSFEESIAANISGISVKQLQVFLDTCLSRYHLKKIEAGASIGAIGAQSIGEPGTQM 1049 Query: 931 TMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKL 973 T++TFH G AS ++ + +K ++N++ K+ Sbjct: 1050 TLKTFHFAGVASMNV-----------TLGVPRIKEIINAAKKI 1081 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 34/146 (23%), Positives = 63/146 (43%), Gaps = 42/146 (28%) Query: 1219 DILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGE 1278 ++ R G+ A R I++E+Q + G+ I+ +H+ ++ M Sbjct: 1255 EVNRTLGIEAARRSIIDEIQYTMKSHGMNIDSRHMMLLADLM------------------ 1296 Query: 1279 QVEYSRVKIANRELEANGKVGATYSRDLLGITKASLAT--ESFISAASFQETTRVLTEAA 1336 TY ++LGIT+ +A S + ASF++T L A+ Sbjct: 1297 ----------------------TYKGEILGITRYGIAKMKSSVLMLASFEKTAEHLFNAS 1334 Query: 1337 VAGKRDELRGLKENVIVGRLIPAGTG 1362 +G+ D++ G+ E +I+G + GTG Sbjct: 1335 YSGREDQIEGVSECIIMGIPMQLGTG 1360 >UniRef50_D1H4X6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Vitis vinifera RepID=D1H4X6_VITVI Length = 1819 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 185/690 (26%), Positives = 296/690 (42%), Gaps = 112/690 (16%) Query: 233 KPEWMILTVLPVLPPDLRPLVPLDGGRFAT-SDLNDLYRRVINRNNRLKRLLDLAAPDII 291 +PE ++LT + V P +RP V +DGG + +D+ + +R+I N L + L Sbjct: 245 RPEKLVLTNIGVPPIAIRPSVFMDGGTQSNENDVTERLKRIIQANASLHQELQDTGSTSK 304 Query: 292 VRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSG 351 LQ V +++ RG + RPL +KGKQGRFR NL GKRV+Y+G Sbjct: 305 CLAGWDYLQIEVAQYINSDVRGVPLAMQAARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 364 Query: 352 RSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI------KAAKKMVEREE 405 R+VI+ P L++ + +P MA L P + L I K++ + Sbjct: 365 RTVISPDPNLKITEVAIPILMAKILSYPERVSHHNIEKLRQCILNGPFKYPGAKLIRYPD 424 Query: 406 AVVWDIL--------DE-----VIREH-----PVLLNRAPTLHRLGIQAFEPVLIEGKAI 447 + ++ DE ++ H VL NR P+LHR+ I ++ + + Sbjct: 425 GSMRSLMFSGRKRFADELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTL 484 Query: 448 QLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVV 507 + + VC YNADFDGD+M +HVP T EA+ EA LM NN+ +P NGE ++ +QD + Sbjct: 485 RFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFL 544 Query: 508 LGLYYMTRD-----------CVNAKGEGMVL---------------TGPKEAERLYRSGL 541 + +TR + G+GM L TG + L R Sbjct: 545 TSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPAIIKAMELWTGKQLFNVLLRP-- 602 Query: 542 ASLHARVKV--RITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPY----SIVNQA 595 HA V+V +T EK N K K+T M G Y +++ Sbjct: 603 ---HANVRVYLNLTVMEKTYN-----KRRGKET--------MCPSDGFVYFRNSELISGQ 646 Query: 596 LGKKAISK-----MLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDM----VI 646 LGK + + + R +++ + G S+GIDD+ ++ Sbjct: 647 LGKATLGNGNKDGLFSVLLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGGLL 706 Query: 647 PEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETV 706 ++K + I E E+ +Q+ G + N + A ++K ET Sbjct: 707 NDQKSKRIEEGYENCHELIQQYNKGKLKLQPGCNAAQTLEAEITGVLNKI------RETT 760 Query: 707 INRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMA-----KPDGSI------- 754 N +E NS +M+ G++GS I Q+ G + PDG I Sbjct: 761 ANVCMEELHWR--NSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRTLPHF 818 Query: 755 ---IETP-----ITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQD 806 +TP + ++F GL ++F T G R+GL DTA+KTA++GY++RRL+ +D Sbjct: 819 PRKSKTPDAKGFVASSFYTGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALED 878 Query: 807 LVVTEDDCGTHEGIMMTPVIEGGDVKEPLR 836 L + D+ + + + G D +P R Sbjct: 879 LSIQYDETVRNANGSIVQFLYGDDGMDPAR 908 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/34 (64%), Positives = 25/34 (73%) Query: 909 INKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAAS 942 I G AIG I A SIGEPGTQ+T++TFH G AS Sbjct: 1468 IEAGTAIGAIGAHSIGEPGTQMTLKTFHFAGVAS 1501 >UniRef50_C5KZ53 DNA-directed RNA polymerase n=4 Tax=Perkinsus marinus ATCC 50983 RepID=C5KZ53_9ALVE Length = 1719 Score = 192 bits (488), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 188/657 (28%), Positives = 289/657 (43%), Gaps = 95/657 (14%) Query: 233 KPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIV 292 +PE +++T +PV P +RP V + DL+ ++ NN +K L V Sbjct: 217 QPERLVVTHVPVSPVCIRPSVQIGDAGTQEDDLSVQTSDIVATNNNIKATLSRGGTLKQV 276 Query: 293 RNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGR 352 + + L V ++++ G A +P++S+ +KGK+GRFR NL GKRV++SGR Sbjct: 277 AEQWQWLSAQVALMMNSEATGLAAAAPTTKPIRSICSRLKGKEGRFRGNLSGKRVNFSGR 336 Query: 353 SVITVGPYLRLHQCGLPKKMALELFKPFIYGKLEL-----------------------RG 389 +VI+ P L + + +P+ A++L P + + + G Sbjct: 337 TVISPDPNLEVTEVIIPQYSAMKLTFPEVVCRTNIDMLRDRVIRGTEGHPGAHIIRLKSG 396 Query: 390 LATTIKAAKKMVEREEAVVWDILDEVIREH-----PVLLNRAPTLHRLGIQAFEPVLIEG 444 + KK + REE +V+ H VL NR P+LH++ I A ++ Sbjct: 397 GVKNLAFIKKQI-REELAADLQYGDVVERHLQDGDVVLFNRQPSLHKMSIMAHRAKVMPW 455 Query: 445 KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQ 504 + + + VC+ YNADFDGD+M VH+P T EA+ EA ALM NN+++ NGEPI+ +Q Sbjct: 456 RTFRFNECVCSPYNADFDGDEMNVHLPQTQEARAEALALMGVQNNLITSKNGEPIVAATQ 515 Query: 505 DVVLGLYYMT-RDCVNAK-------------GEGMVLTGP---KEAERLYRSGLASLHAR 547 D + + +T RD K E + L P K + L SL R Sbjct: 516 DFLTSAWLLTQRDTFLTKDKIANIAMYFGKAAETLELPPPTIMKPIQLWTGKQLISLMLR 575 Query: 548 VKVRITEYEKDANGELVAKT-SLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAI--SKM 604 + T N E+ K S D R ++I ++ LGKK + SK Sbjct: 576 PSHKSTVL---VNLEMAEKNYSHGDPYFCRNDGYVIFYNS---ELIAGNLGKKILGGSKP 629 Query: 605 LNTCYRILGLKPTVIFA--DQIMYTGFAYAARSGASVGIDDMV----IPEKKHEIISEAE 658 T I P V A ++ + G S GIDD+ I K E ++E Sbjct: 630 GLTFVLIRDNSPAVAAACLGRLSKLSARWLGTRGMSFGIDDVTASPEIEAFKKEQVAEKY 689 Query: 659 AEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSK---AMMDNLQTETVINRDGQEEK 715 A V E E+++ G + N + A N + K + D L E V+ R Sbjct: 690 AYVDEKIEEYRKGKLPLKPGCNAEQTLEAVINGELGKIRNVVGDRL--EKVLPR------ 741 Query: 716 QVSFNSIYMMADSGARGSAAQIRQL---------AGMR---GLMAK--PD-GSIIETPIT 760 FN +MA G++GS + Q+ G R G + + P +TP + Sbjct: 742 ---FNKPRIMAQCGSKGSPINLSQMIVCLGQQNVGGQRIQNGFVNRTLPHFKKFSKTPQS 798 Query: 761 ANFRE-----GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTED 812 F E GLN +YF T G R+GL DTA+KTA +GY+ R+L+ +DL + D Sbjct: 799 RGFVEDSFFSGLNPFEYFFHTMGGREGLVDTAVKTAETGYMQRKLIKALEDLGLKYD 855 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 83/186 (44%), Gaps = 34/186 (18%) Query: 762 NFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLV-----DVAQDLVVTEDDCGT 816 NF +N +Q+ + H R + AL + LT L+ +V +T D Sbjct: 888 NFEHTMNHVQHVVEKHHTR----EVALLPSEYRALTNELIQQVDQEVKSICPLTSLDTSR 943 Query: 817 HEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENS 876 G + + GG E ++RV + +D ++ PR + L + C L E Sbjct: 944 FTGDLTEFI--GGMASEMEKERVKVGLPVDDRVRDD------PRESTLCDLSCALTE--- 992 Query: 877 VDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFH 936 ++RS ++ CA Y R L + GEA+G +AQSIGEP TQ+T++TFH Sbjct: 993 ---AQLRSFMT------TCARKYRRAL-----MEPGEAVGATSAQSIGEPATQMTLKTFH 1038 Query: 937 IGGAAS 942 G AS Sbjct: 1039 FAGVAS 1044 >UniRef50_D1HEN1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Vitis vinifera RepID=D1HEN1_VITVI Length = 1565 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 228/883 (25%), Positives = 364/883 (41%), Gaps = 191/883 (21%) Query: 233 KPEWMILTVLPVLPPDLRPLVPLDGGRFATSDL---------------NDLYRR---VIN 274 +P+WMIL VLP+ PP +RP V +D + + L +DL + +I Sbjct: 270 RPDWMILQVLPIPPPPVRPSVMMDTSSRSEASLSVLVNDRLKLSMWLWDDLTHQLAMIIR 329 Query: 275 RNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRA-ITGSNKRPLKSLADMIKG 333 N L+R AP I+ ++LQ V DN G+ T + RP+KS+ +K Sbjct: 330 HNENLRRQERNGAPAHIISEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKA 389 Query: 334 KQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATT 393 K+GR R NL+GKRVD+S R+VIT P + + + G+P +AL L P + L Sbjct: 390 KEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKEL 449 Query: 394 I---------KAAKKMVEREEAVVWDI------------LDEVIREHP-----VLLNRAP 427 + K K + RE+ D+ L + H VL NR P Sbjct: 450 VEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQP 509 Query: 428 TLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMST 487 +LH++ I ++ +L+ V + YNADFDGD+M +HVP + E + E LMM Sbjct: 510 SLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVP 569 Query: 488 NNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVLTGPKEAERLYRSGLASLHA 546 I+SP + P++ QD +LG +T RD K Sbjct: 570 KCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKD------------------------ 605 Query: 547 RVKVRITEYEKDANGELVAKTSLKDTTV--GRAILWMIVPKG------------------ 586 V + I + +D +G++ A LK + G+ + +I+PK Sbjct: 606 -VFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQINLLRTSAWHSESETGFI 664 Query: 587 --------------LPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYA 632 L ++ + LG + +++ + +G F + + Sbjct: 665 TPGDTQVRIEKGELLAGTLCKKTLG-TSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL 723 Query: 633 ARSGASVGIDDMVIP----EKKHEIISEAEAEVAEI-------QEQFQSGLVTAGERYNK 681 ++G S+GI D + EK +E IS+A+ EV E+ Q + + G N+ Sbjct: 724 LQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQERQLEAEPGRTMMESFENR 783 Query: 682 VIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLA 741 V + A D + +L N++ M +G++GS I Q+ Sbjct: 784 VNQVLNKARDDAGSSAQKSLSES---------------NNLKAMVTAGSKGSFINISQMT 828 Query: 742 ---GMRGLMAK--PDGSIIET----------PITANFRE-----GLNVLQYFISTHGARK 781 G + + K P G I T P + F E GL ++F G R+ Sbjct: 829 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 888 Query: 782 GLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLR----- 836 GL DTA+KT+ +GY+ RRLV +D++V D GT + GDV + L Sbjct: 889 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVRNSL-------GDVIQFLYGEDGM 939 Query: 837 DRVLGRVTAEDVLKPGTADI-LVPRNTLLHEQW--CDLLEENSVDAVKVRSVVSCDTDFG 893 D V D LK + V + + E W +L E+ R + + F Sbjct: 940 DAVWIETQKLDSLKMKKGEFDRVFKYEIDDENWNPSYMLPEH-------RLIWNAQKTFK 992 Query: 894 VCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVK 953 R L ++ GE IG +AAQSIGEP TQ+T+ TFH G +++ Sbjct: 993 ERLKIESRFLQS--LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNV-------- 1042 Query: 954 NKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYK 996 ++ + ++ ++N + K+ S + LK + +TKE K Sbjct: 1043 ---TLGVPRLREIINVAKKIKTPSLSVYLK--PDVSKTKERAK 1080 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/160 (24%), Positives = 69/160 (43%), Gaps = 44/160 (27%) Query: 1219 DILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGE 1278 +++ + G+ AV R +++E++ V G +N +H+ ++ M Sbjct: 1165 EVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTM------------------ 1206 Query: 1279 QVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESF--ISAASFQETTRVLTEAA 1336 TY L+ IT+ + + SF+ET +L +AA Sbjct: 1207 ----------------------TYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 1244 Query: 1337 VAGKRDELRGLKENVIVGRLIPAGTGYA--YHQDRMRRRA 1374 V + D LRG+ EN+++G+L P GTG Y D+M + A Sbjct: 1245 VYAETDFLRGVTENIMLGQLAPIGTGDCALYLNDQMLQHA 1284 >UniRef50_Q86AQ5 DNA-directed RNA polymerase III subunit rpc1 n=8 Tax=Eukaryota RepID=RPC1_DICDI Length = 1450 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 213/851 (25%), Positives = 361/851 (42%), Gaps = 157/851 (18%) Query: 81 RGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLY 140 + +C CG+ + G+I+L P HI +LK++ + +L M + +L Sbjct: 63 KQAMCTTCGLSIVDCV---GHFGYIKLQLPVFHIGYLKNIMN----ILQMICKSCSTILL 115 Query: 141 FES----YV--VIEGGMTNLERQQILTE-------------------------------E 163 E Y+ + M NL+R+ +L + E Sbjct: 116 NEEKKQYYLRKMRNKKMDNLQRKSLLKKIFLECRKTKECLKCGSTNGMIKKSGAFKIIHE 175 Query: 164 QYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKR-IK 222 +Y E D + A A+ + +++ ++ +++LN + KK++ + I+ Sbjct: 176 KYKGKTESLQDYY-----ALYDDAIKYNPEMKSHIKKAQDDLNPLVALNLFKKISYQDIE 230 Query: 223 LLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFAT-SDLNDLYRRVINRNNRLKR 281 ++ G +PE +ILT + V P +RP VP+DGG DL +++ N ++ Sbjct: 231 IMNMDPVIG-RPERLILTYMLVPPVSIRPSVPMDGGSGTNEDDLTMKLSEILHINEHIRS 289 Query: 282 LLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQN 341 +D A I+ + LQ + +++ G + + ++ L+ +KGK GRFR N Sbjct: 290 NVDRAEMSAIMEDWD-YLQASCAIYINSDVPGLPLQMKPTKAVRGLSQRLKGKTGRFRGN 348 Query: 342 LLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGL----------- 390 L GKRVD+SGR+VI+ P L + + +P+ +AL + P + L Sbjct: 349 LSGKRVDFSGRTVISPDPNLNIDEVAVPQLIALTMTYPERVTDYNIERLQKYVINGPDRH 408 Query: 391 --------ATTIKAAKKMVEREEAVVWDILDEVIREHPV-----LLNRAPTLHRLGIQAF 437 A +K K RE+ + +++ H + L NR P+LH+L I + Sbjct: 409 PGANYIIYADGVKKWLKFGNREKFAAELKIGDIVERHIIDGDIMLFNRQPSLHKLSIMSH 468 Query: 438 EPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGE 497 + ++ + ++ + VC YNADFDGD+M +H+P T EA+ EA LM TNN+++P NGE Sbjct: 469 KARVMPWRTLRFNECVCTPYNADFDGDEMNIHLPQTEEARAEATILMGVTNNLITPRNGE 528 Query: 498 PIIVPSQDVVLGLYYMTRD------------CVNA--KGEGMVLTGP---KEAERLYRSG 540 P++ +QD + Y ++R C + E + L P K E Sbjct: 529 PLVAATQDFLTASYLISRRDAFYERYRFALMCTHFADANEHIDLPPPAILKPVELWTGKQ 588 Query: 541 LASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKA 600 + + R V+ N E ++T K+ L+M G Y N L + Sbjct: 589 IFEVLLRPSVKSHVL---CNFETRSRTYSKN-------LYMCPKDGYVY-FRNSELMCGS 637 Query: 601 ISKML------NTCYRIL--GLKPTVIFADQIMYTGFAYAAR----SGASVGIDDMVIPE 648 I K + N+ + IL PT+ A M AR G S+GI D+ E Sbjct: 638 IDKSIIGGGNKNSLFHILMRDFSPTI--AANCMTRLAKLCARFLGDQGFSIGIPDIKPAE 695 Query: 649 ----KKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTE 704 KK EII A + A + ++SG + + ++ +A M+ QT Sbjct: 696 DLDRKKREIIETAYKKCAVFLKDYESGSLQLSS---------GCSMEQTFEAKMN--QTL 744 Query: 705 TVINRDGQE---EKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAK-----PDGSIIE 756 + I D + ++NS +M G++GS I Q+ G P+G Sbjct: 745 SQIRDDCGKLCVNDLPNYNSPLIMGLCGSKGSNINIAQMICCVGQQIVNGTRIPNGFTNR 804 Query: 757 TP---------------ITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLV 801 T ++ +F G+ ++F T G R+GL DTA+KTA +GY+ RRL+ Sbjct: 805 TTPHFKHFAKNPKSKGFVSNSFYTGMIPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLM 864 Query: 802 DVAQDLVVTED 812 +DL D Sbjct: 865 KALEDLSTHYD 875 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/49 (55%), Positives = 32/49 (65%), Gaps = 5/49 (10%) Query: 894 VCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAAS 942 +C Y R AR I G A+G I AQSIGEPGTQ+T++TFH G AS Sbjct: 1087 ICLDKYSR--AR---IEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVAS 1130 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 44/64 (68%), Gaps = 2/64 (3%) Query: 1301 TYSRDLLGITKASLAT--ESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIP 1358 ++ ++LGIT+ +A ES + ASF++TT L +AAV ++D++ G+ E +I+G +IP Sbjct: 1365 SFKGEILGITRFGIAKMKESVLMLASFEKTTDHLFDAAVHHRQDDIVGVSECIIMGVVIP 1424 Query: 1359 AGTG 1362 GTG Sbjct: 1425 LGTG 1428 >UniRef50_D2VNK8 RNA polymerase II n=2 Tax=Naegleria gruberi RepID=D2VNK8_NAEGR Length = 1757 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 193/720 (26%), Positives = 305/720 (42%), Gaps = 98/720 (13%) Query: 176 FDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLT--------KRIKL---- 223 F + G +Q + L+ E ++ E E +++LT KRI Sbjct: 136 FQPRNGCGGLQPKISRDGLKIFAEYKKDTSAEAKQELTKQELTAERALQIFKRIPAEDLE 195 Query: 224 LEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLL 283 L F + +PEWMILT LP+ PP +RP V + DL +I N +++ Sbjct: 196 LLGFDKDNARPEWMILTCLPIPPPQVRPSVHHGSADRSEDDLTHKLADIIKANAAIQKNE 255 Query: 284 DLAAPDIIVRNEKRMLQEAVDALLDNGRRG-RAITGSNKRPLKSLADMIKGKQGRFRQNL 342 P + RMLQ ++N G T + RPLKS+ +KGK+GR R NL Sbjct: 256 KSGTPLHQMEEMVRMLQYHCATYVNNEYPGVPTATTKSGRPLKSIRQRLKGKEGRVRGNL 315 Query: 343 LGKRVDYSGRSVITVGPYLRLHQCGLPKKMAL-----ELFKPFIYGKL-ELRGLATTIKA 396 +GKRVD+S R+VIT P + + Q G+P+ +A E+ PF + +L EL Sbjct: 316 MGKRVDFSARTVITADPNIDIDQVGVPRTVASNMTVPEIVTPFNFERLNELVTNGPLTYP 375 Query: 397 AKKMVEREEAVVWDIL-------DEVIREHP------------VLLNRAPTLHRLGIQAF 437 K V RE+ D+ D++ E+ +L NR P+LH++ + Sbjct: 376 GAKYVIREDGTRIDLRFASGKANDQIQLEYGYKVERHLQDGDVILFNRQPSLHKMSMMGH 435 Query: 438 EPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGE 497 ++ +++ V YNADFDGD+M +HVP +L+ + E LMM NI++P + Sbjct: 436 RIKVMPYSTFRMNLSVTTPYNADFDGDEMNLHVPQSLQTKAELLELMMVPRNIITPQSNR 495 Query: 498 PIIVPSQDVVLGLYYMT-RDCVNAKGEGM----------------VLTGPKEAERLYRSG 540 P+I QD +L +T RD AK M + PK L+ Sbjct: 496 PVIALVQDTLLAASKLTRRDVFIAKDLMMNCLMHLIDFDGKLPVPAILKPKP---LWTGK 552 Query: 541 LASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKA 600 KV + E + +L K D + +++ +G +V+ L KK+ Sbjct: 553 QLFTFLLPKVNL-ENTSSTHEDLTDKKDHLDHDIPEFDTKVLIDRG---ELVSGVLDKKS 608 Query: 601 ISKMLNTCYRIL----GLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIP----EKKHE 652 + + I+ G+ F Q + G S+GI D + E+ E Sbjct: 609 LGSSHGSLIHIIVNEKGVNEGKKFLGQCQRVINHWLINRGFSIGIGDTIADKATMEQIEE 668 Query: 653 IISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQ 712 I +AE +V I + Q G + R I + ++V+K + N E N+ + Sbjct: 669 TIRKAEKDVKLIVKDAQEGKL----RAEAGRTIQQSFENQVNKVL--NKAREDAGNKAKK 722 Query: 713 EEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGL-------------------MAKPDGS 753 K N+I M +G++GS I Q+ G A+ D Sbjct: 723 SLKDD--NNIKSMVTAGSKGSYINISQIIACVGQQNVEGKRIPYGFRNRTLPHFAQDDHG 780 Query: 754 IIETPITAN-FREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTED 812 AN + GL ++F T G R+GL DTA+KT+ +GY+ RRL+ +D++V D Sbjct: 781 PESRGFVANSYLRGLTPQEFFFHTMGGREGLIDTAVKTSETGYIQRRLIKAMEDIMVKYD 840 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 25/32 (78%) Query: 912 GEAIGVIAAQSIGEPGTQLTMRTFHIGGAASR 943 GE +G +AAQSIGEP TQ+T+ TFH G +S+ Sbjct: 1070 GEMVGSVAAQSIGEPATQMTLNTFHFAGVSSK 1101 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 37/167 (22%), Positives = 67/167 (40%), Gaps = 44/167 (26%) Query: 1218 HDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEG 1277 ++IL + G+ A ++ E++ V G +N +H+ ++ M Sbjct: 1361 NEILDVLGIEACRNALMREMRKVIEFDGSYVNYRHLAILCDVM----------------- 1403 Query: 1278 EQVEYSRVKIANRELEANGKVGATYSRDLLGITKASL--ATESFISAASFQETTRVLTEA 1335 T+ L+ IT+ + + + SF+ET +L EA Sbjct: 1404 -----------------------THRGGLMAITRHGINRSDTGPLMRCSFEETVEILIEA 1440 Query: 1336 AVAGKRDELRGLKENVIVGRLIPAGTGY--AYHQDRMRRRAAGEAPA 1380 A D L+G+ NV+VG+L P GTG Y + + ++A P+ Sbjct: 1441 ATFADTDTLKGVSANVMVGQLAPIGTGCFGLYLDEELLKQAVAVKPS 1487 >UniRef50_Q98RN1 DNA-directed RNA polymerase n=1 Tax=Guillardia theta RepID=Q98RN1_GUITH Length = 1289 Score = 189 bits (481), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 186/711 (26%), Positives = 309/711 (43%), Gaps = 122/711 (17%) Query: 331 IKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKP-----FIYGKL 385 +KGK GRFR L+GKRVD+S R+VI+ P L L Q G+P + L P + Y +L Sbjct: 301 LKGKNGRFRGTLIGKRVDFSARTVISPDPNLFLSQIGIPIIICKNLSFPEKLNFYNYERL 360 Query: 386 E---LRG-------LATTIKAAKKMV----EREEAVVWDILDEVIREHPV-----LLNRA 426 + LRG ++ + KK+ ++ + + + I+ H V L NR Sbjct: 361 KRCILRGNDRYPGVVSVITRDNKKIFLNKSNKKNMMFFSKIGNSIQRHLVKNDIILFNRQ 420 Query: 427 PTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMS 486 P+LHRL I A + + K +L+ VC YNADFDGD+M +HVP + ++ EA L+ S Sbjct: 421 PSLHRLSIMAHRIRIFKEKTFRLNHCVCKPYNADFDGDEMNLHVPQSETSRTEAITLLNS 480 Query: 487 TNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL-- 544 NN +P NGE +I SQD + + +T + E + E L+ + L ++ Sbjct: 481 YNNFYTPRNGEILIACSQDFLSYSFILTSRNIFFNKEEVTGLISGEVSDLFNNILPAILK 540 Query: 545 ------HARVKVRITEYEKD-----------ANGELVAK-TSLKDTTVGRAIL----WMI 582 ++ I ++K+ N ++ K TS + T + W I Sbjct: 541 PKILWTGKQIFSEILFFDKNYYHLNLIKKQKTNYQIREKFTSRQFNTCSPFVCPIEGWTI 600 Query: 583 VPKGLPYSIVNQALGKKAI-----------SKMLNTCYRILG--LKPTVIFADQIMYTGF 629 + L I++ LGK ++ S+ N+ IL LK +++ + GF Sbjct: 601 IKNNL---ILSGRLGKTSLGTGNKMSLFSFSRNNNSASEILNSILKISILNQNWFSNYGF 657 Query: 630 AYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAA 689 +++ + VI +KK +IIS+A+ + + + V+D + Sbjct: 658 SFSINNVKP----SKVICKKKEQIISKAK----NVHQSLNYKKKITNKNSLMVLDTFEEK 709 Query: 690 NDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLA---GMRGL 746 + + ++ +L R K + NS +M SG++GS + Q+ G + + Sbjct: 710 LNIILNSVKGDL------GRICVTTKNIDNNSASIMVASGSKGSQLNLVQMMLTLGQQMI 763 Query: 747 MAK-----------PDGSIIETPITAN--------FREGLNVLQYFISTHGARKGLADTA 787 AK P S + + N F GL+ ++F + R+GL DTA Sbjct: 764 SAKRILNGFSYRILPSQSFKKENMLFNEKGLIENSFYSGLDSKEFFFHSMAGREGLIDTA 823 Query: 788 LKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAED 847 +KTA GYL RRLV +D+ + D + GGD P + + D Sbjct: 824 VKTAEIGYLQRRLVKSLEDISIMNDSTVRDSFGRIYQFTFGGDNVNPENFSKFYSINSFD 883 Query: 848 V---LKPGTADILVPRNTLLHEQWCDLLEE-----NSVDAVKVRSVVSCDTDFGVCAHCY 899 LK T + L+ L + + N + + +++ ++FG Y Sbjct: 884 FSLKLKKSTDNYLLY--VFLRAHFLRFFDSLTFSINLRNKINFEKILNIKSNFG-----Y 936 Query: 900 GRDLARGH-------IINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASR 943 L + + II+ G +G I+AQS+GEPGTQ+T++TFH G S+ Sbjct: 937 FEILIKKYFQTFKLVIIDPGTGVGCISAQSLGEPGTQMTLQTFHSAGTGSQ 987 >UniRef50_D0NAG7 DNA-directed RNA polymerase n=1 Tax=Phytophthora infestans T30-4 RepID=D0NAG7_PHYIN Length = 1534 Score = 189 bits (480), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 173/669 (25%), Positives = 297/669 (44%), Gaps = 115/669 (17%) Query: 231 GNKPEWMILTVLPVLPPDLRPLVPLDGGRFAT-SDLNDLYRRVINRNNRLKRLLDLAAPD 289 G +PE ++L + V P +RP V +DGG + D+ + ++ N L+ L A Sbjct: 258 GGRPEKLLLNSVLVPPVCIRPSVAMDGGTGSNEDDITVKLQEIVQVNFALRAALQKGASL 317 Query: 290 IIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDY 349 +V + LQ V L++ G K ++ L +KGKQGRFR NL GKRVD+ Sbjct: 318 KMVMEDWDFLQIQVAQLMNGDTPGLVKPPGAKTGIRGLCQRLKGKQGRFRGNLSGKRVDF 377 Query: 350 SGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI--------------- 394 SGR+VI+ P LR+ Q G+P+ +A + P + + L + Sbjct: 378 SGRTVISPDPNLRIDQVGVPEHVAKTMTYPEKVTRYNIEKLRKCVVNGPHVHPGANVIRI 437 Query: 395 ---KAAKKMVEREEAVVWDILD--EVIREHP-----VLLNRAPTLHRLGIQAFEPVLIEG 444 K K ++ + A + D L +++ H VL NR P+LH++ I + ++ Sbjct: 438 EGQKFTKNLLYGDRASLADELKIGDIVERHMEDGDIVLFNRQPSLHKMSIMSHRVKVMPW 497 Query: 445 KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQ 504 + + + VC+ YNADFDGD+M +H+P T EA+ EA LM N+++P NGEP++ +Q Sbjct: 498 RTFRFNECVCSPYNADFDGDEMNMHLPQTEEARTEAITLMGVEQNLITPRNGEPLVAATQ 557 Query: 505 DVVLGLYYMTRDCV--NAKGEGMVLTGPKEAE--------------RLYR-----SGLAS 543 D + Y +T+ + N + V++ +A RL+ S L Sbjct: 558 DFLTASYLLTQKNIFFNREQFCQVISIMSDANEHIELPPPAIVLPVRLWTGKQVISLLVK 617 Query: 544 LHARVKV----RITEYEKDANGELVAK--------TSLKDTTVGRAILWMIVPKGLPYSI 591 +A+ KV + E +N + K + L +G+ L +GL Y + Sbjct: 618 PNAQTKVLANLELKERNYTSNKFMCWKDGYVCFRNSELICGNLGKKTLGDGSKQGLFYVL 677 Query: 592 VNQALGKKA---ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMV--- 645 + +A ++++ C R LG + GF S+GIDD+ Sbjct: 678 IRDHGSHEAARCMNRLAKLCARWLG-----------NFKGF--------SIGIDDVTPSE 718 Query: 646 -IPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTE 704 + ++K +++ E+++ G ++ N + + + N + K + + E Sbjct: 719 ELSKEKQKLLQAGYDAANNSIEEYRRGKLSLKPGCNAIQSLESELNGLLGK-LRETAGAE 777 Query: 705 TVINRDGQEEKQVSF-NSIYMMADSGARGSAAQIRQLAGMRGLMA-----KPDGSIIETP 758 + + + F N+ +MA+ G++GSA I Q+ G + P+G + T Sbjct: 778 CM--------RTLPFHNNPRIMAECGSKGSALNISQMMACVGQQSVGGKRVPEGFVNRTL 829 Query: 759 ---------------ITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDV 803 + +F GL ++F T G R+GL DTA+KTA +GY+ RRL+ Sbjct: 830 PHFLPHALHASAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMARRLMKA 889 Query: 804 AQDLVVTED 812 +DL D Sbjct: 890 LEDLSCQYD 898 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 20/31 (64%), Positives = 25/31 (80%) Query: 912 GEAIGVIAAQSIGEPGTQLTMRTFHIGGAAS 942 GEA+G + AQSI EPGTQ+T++TFH G AS Sbjct: 1164 GEAVGAVGAQSISEPGTQMTLKTFHFAGVAS 1194 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 2/64 (3%) Query: 1301 TYSRDLLGITKASLAT--ESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIP 1358 T+ ++LGIT+ +A ES + ASF++TT L +AAV + D + G+ E +I+G IP Sbjct: 1448 TFKGEVLGITRFGIAKMKESVLMLASFEKTTDHLFDAAVHSRTDAIVGVSECIIMGIPIP 1507 Query: 1359 AGTG 1362 GTG Sbjct: 1508 LGTG 1511 >UniRef50_A4S3M0 DNA-directed RNA polymerase n=34 Tax=Eukaryota RepID=A4S3M0_OSTLU Length = 1646 Score = 189 bits (479), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 228/900 (25%), Positives = 371/900 (41%), Gaps = 151/900 (16%) Query: 6 KFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPV 65 +F + + +A++ + SPD IR S ++ ET Y +P+R GL R+ Sbjct: 6 RFPHSTAELCRVNAVQFGVLSPDEIRKMSVCAIETSET--YEKGRPKRGGLSDPRM---- 59 Query: 66 KDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIG 125 RG +CE G + QT GH+ELA P H F+ + Sbjct: 60 -----------GTMDRGAVCETDGCDSVQTP---GYFGHLELAKPVYHHGFINVV----- 100 Query: 126 LLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAK-----M 180 LR + V Y S +++ + + Q++ + + L++ D K Sbjct: 101 ------LRILRCVGYSSSQLLLHKD-EDPKFAQLMRIKNPKNRLKKLTDACKTKSVCPYT 153 Query: 181 GAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKR-IKLLEAFVQSG-------- 231 G Q L+ M + E + EEL E K +R +++L+A Sbjct: 154 GTAQPQYRLEGMKITAEFKHRDEELLPEGGERKVIVTAERALQILKAISDEDCRALGLDP 213 Query: 232 --NKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPD 289 +P+W IL V+PV PP +RP V D + DL ++ N L+R AP Sbjct: 214 EHARPDWFILQVMPVPPPPVRPSVSFDASTRSEDDLTVKLMEIVRTNKNLERQEQNGAPQ 273 Query: 290 IIVRNEKRMLQEAVDALLDNGRRG--RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRV 347 ++ +LQ + +DN G RA+T S R +KS+++ +KGK GR R NL+GKRV Sbjct: 274 HVILEFTELLQYHIMTFMDNTVAGMPRALTRSG-RSIKSISERLKGKAGRIRGNLMGKRV 332 Query: 348 DYSGRSVITVGPYLRLHQCGLPKKMAL-----ELFKPFIYGKLE---------------- 386 D+S R+VIT P L L + G+P +AL E P+ +L+ Sbjct: 333 DFSARTVITPDPNLMLDELGVPWSIALNMTYPETVTPYNIDRLQRLVENGPHPPPGETGA 392 Query: 387 ---LR--GLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVL 441 +R G ++ KK E+ + + ++ VL NR P+LH++ I + Sbjct: 393 RYIIREDGQRLDLRFLKKSSEKRLEYGYKVERHMVNGDVVLFNRQPSLHKMSIMGHRVRI 452 Query: 442 IEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIV 501 + +L+ V YNADFDGD+M +H+P + E + E + LMM I+SP +P++ Sbjct: 453 MPYSTFRLNLSVTPPYNADFDGDEMNMHLPQSYETRAEVKELMMVPKMIVSPQANKPVMA 512 Query: 502 PSQDVVLGLYYMT-RDCVNAKGEGMVLTGPKEAERLYRSGLASLHARV-KVRITEYEKDA 559 QD +LG +T RD K M + L +V K I + + Sbjct: 513 IVQDTLLGCRLITKRDTFITKDVFMNII----------MWLEDWDGKVPKPAILKPQPLW 562 Query: 560 NGELVAKTSLKDTTVGRAILWMIVPKGLPYSI------------VNQALGKKAISK---- 603 G+ V L + R W + +S+ + L KK + Sbjct: 563 TGKQVFSMMLPKVNLLRTSAWAKDSDDMAFSVDDTGVRIEQGELLTGTLCKKTMGSGGGG 622 Query: 604 MLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKK----HEIISEAEA 659 +++ + G Q + G +VGI D + ++ + I++A+A Sbjct: 623 LIHVTWEEWGPIAARGLISQTQTLVNYWVLHHGFTVGIADTIADDETMFSINNTITKAKA 682 Query: 660 EVAEI-------QEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQ 712 +V E+ + + Q G+ KV I A D + ++L Sbjct: 683 DVKEVIKLAQNNELELQPGMTMQQSFEQKVNQILNKARDNAGNSAQNSL----------- 731 Query: 713 EEKQVSFNSIYMMADSGARGSAAQIRQL---AGMRGLMAK--PDGSIIET---------- 757 + N++ MM +G++GS I Q+ G + + K P G T Sbjct: 732 ----MDTNNVKMMVTAGSKGSFLNISQMIACVGQQNVEGKRIPYGFKGRTLPHFSKDDFG 787 Query: 758 PITANFRE-----GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTED 812 P + F E GL ++F G R+GL DTA+KT+ +GY+ RRLV +D+VV D Sbjct: 788 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDVVVKYD 847 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 18/32 (56%), Positives = 25/32 (78%) Query: 912 GEAIGVIAAQSIGEPGTQLTMRTFHIGGAASR 943 G+ IG +AAQSIGEP TQ+T+ TFH G +++ Sbjct: 1057 GDGIGTVAAQSIGEPATQMTLNTFHFAGVSAK 1088 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 32/146 (21%), Positives = 60/146 (41%), Gaps = 42/146 (28%) Query: 1219 DILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGE 1278 +++++ G+ AV ++ E++ V G +N +H+ ++V M Sbjct: 1330 EVIQVLGIEAVRNTLLRELRGVIEFDGSYVNYRHLAILVEVM------------------ 1371 Query: 1279 QVEYSRVKIANRELEANGKVGATYSRDLLGITKASL--ATESFISAASFQETTRVLTEAA 1336 TY L+ IT+ + + SF+ET +L EA+ Sbjct: 1372 ----------------------TYRGHLMSITRHGINRVETGPLMRCSFEETVDILMEAS 1409 Query: 1337 VAGKRDELRGLKENVIVGRLIPAGTG 1362 +RD + G EN+++G+ P GTG Sbjct: 1410 AFSERDNMTGPSENIMLGQFCPIGTG 1435 >UniRef50_A8IRZ2 DNA-directed RNA polymerase n=3 Tax=Eukaryota RepID=A8IRZ2_CHLRE Length = 1789 Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 232/916 (25%), Positives = 378/916 (41%), Gaps = 159/916 (17%) Query: 1 MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60 M + +F + + AI+ ++ P I+++S E+ ET Y KP+ GL R Sbjct: 1 MASVDRFPFSSAPVRQVKAIQFSVWDPAEIKAYSVAEIVTSET--YEKGKPKLGGLSDPR 58 Query: 61 IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120 + RG IC G + GHI LA P HI F+K++ Sbjct: 59 M---------------GTMDRGGICTTDGANANDSP---GYFGHIALARPVYHIGFIKTV 100 Query: 121 PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQ----YLDALEEFGDEF 176 +R + V Y S ++++ +++ + Y L + G + Sbjct: 101 -----------VRVLRCVSYHTSRLLVDKDDPKYAYGLRISDSEKRLRYFVHLCQ-GKKM 148 Query: 177 DAKMGAEAIQALLKSMDLEQECEQLR--EELNETNSETKRK-------KLTKRIKLLEA- 226 D G L + + E +L+ EE + N E K++ ++ KRI + Sbjct: 149 DEATGNPQPSYRLDGLKIMAEFPKLKGDEEQEQDNVERKQELTAARALEIMKRIPAEDCR 208 Query: 227 ---FVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLL 283 F +P+WMI+ +PV PP +RP V +D DL ++ NN +K+ Sbjct: 209 ALGFDCRFTRPDWMIIQNMPVPPPPVRPSVMMDSSSRCEDDLTHKLAEILRTNNAIKKQD 268 Query: 284 DLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNK---RPLKSLADMIKGKQGRFRQ 340 P ++ + LQ + DN G I SN+ RP+KS+++ +KGK GR R Sbjct: 269 ATGTPQHVIAEQIMALQYHITTYFDNSSPG--IPKSNQKSGRPIKSISERLKGKSGRIRG 326 Query: 341 NLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI------ 394 NL+GKRVD+S R+VIT P + + + G+P +AL L P + L + Sbjct: 327 NLMGKRVDFSARTVITGDPNIGIDELGVPWSIALNLTFPETVTPFNIEKLQKLVDNGPNP 386 Query: 395 ---KAAKKMVEREE------AVVWDILD------------------------------EV 415 + K + RE+ AVV D + Sbjct: 387 PPGETGAKHIIREDGRRVSLAVVKGDADRRLEPGDKVGGKGTQMTADGGGVARCCVERHL 446 Query: 416 IREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLE 475 I VL NR P+LH++ + ++ +L+ V YNADFDGD+M +HV T E Sbjct: 447 INGDLVLFNRQPSLHKMSMMGHRVRILPYSTFRLNLSVTTPYNADFDGDEMNMHVAQTHE 506 Query: 476 AQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGM-VLTGPKEA 533 + E LMM NI+SP +P++ QD +LG MT RD K M + G ++ Sbjct: 507 TRAEMANLMMVPRNIVSPQANKPVMGIVQDALLGTRMMTKRDIFIEKDNFMNCVMGIEDW 566 Query: 534 ERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLK------------DTTVGRAILWM 581 + G + A +K R K V +LK D +V A + Sbjct: 567 D-----GTVPMPAVLKPRPLWTGKQIFSMFVPDVNLKNKSAWYKDADVPDMSVDDAQV-- 619 Query: 582 IVPKGLPYSIVNQALGKKAISK----MLNTCYRILGLKPTVIFADQIMYTGFAYAARSGA 637 ++ +G ++ AL KK + +++ + G F + + T + G Sbjct: 620 LIRQG---ELLTGALCKKTVGNGAGGLVHLTWLEHGPHAARGFINNVQRTVNYWVLNHGM 676 Query: 638 SVGIDDMVIPEKK----HEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRV 693 S+GI D V K +EII EA+ +V E+ E++Q + A + + + + A +++ Sbjct: 677 SIGIGDTVADAKTMAKVNEIIEEAKRKVKEVVEKYQQNALEA-QPGRTIHESFEAQVNQI 735 Query: 694 SKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGL------- 746 D+ ++ D N+I M +G++GS I Q+ G G Sbjct: 736 LNKCRDDAGKAAYMSVDLS-------NNIIKMVTAGSKGSNINISQMMGCVGQQNVEGKR 788 Query: 747 ------------MAKPD-GSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANS 793 K D G + ++ GL ++F G R+GL DTA+KTA++ Sbjct: 789 IPFGFQNRTLPHFNKDDLGPEARGFVGNSYLRGLTPQEFFFHAMGGREGLIDTAVKTAST 848 Query: 794 GYLTRRLVDVAQDLVV 809 GY+ RRLV +D+VV Sbjct: 849 GYIQRRLVKAMEDMVV 864 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 38/144 (26%) Query: 1219 DILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGE 1278 ++L + G+ A + EV++V + G +N +H+ +V M K ++ Sbjct: 1355 EVLEVLGIEAARAALFKEVRNVIQFDGSYVNYRHLACLVDIMTCKGCLM----------- 1403 Query: 1279 QVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVA 1338 I + NG ++ SF+ET +L AA+ Sbjct: 1404 -------AITRHGINRNGN--------------------GPMTQCSFEETVDILYRAAMF 1436 Query: 1339 GKRDELRGLKENVIVGRLIPAGTG 1362 G+RD+L G+ +N+++G + P GTG Sbjct: 1437 GERDKLMGVSDNIMMGNMCPLGTG 1460 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/41 (48%), Positives = 29/41 (70%), Gaps = 3/41 (7%) Query: 903 LARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASR 943 LA+ H GE +G +AAQS+GEP TQ+T+ TFH G +++ Sbjct: 1071 LAQAH---AGECVGTVAAQSLGEPTTQMTLNTFHFAGVSAK 1108 >UniRef50_P04052 DNA-directed RNA polymerase II subunit RPB1 n=1391 Tax=cellular organisms RepID=RPB1_DROME Length = 1887 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 212/841 (25%), Positives = 356/841 (42%), Gaps = 152/841 (18%) Query: 85 CEKCGVEVTQTKVRRERMGHIELASPTAHIWF-------LKSLPSRIGLLLDMP----LR 133 C+ C +T+ GHI+LA P HI F L+ + +L P ++ Sbjct: 67 CQTCAGNMTECP---GHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIK 123 Query: 134 DI---------ERVLYF----ESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKM 180 +I +R+ Y + + EGG E + E Q D ++ G Sbjct: 124 EIVMKSRGQPRKRLAYVYDLCKGKTICEGG----EDMDLTKENQQPDPNKKPGHG----- 174 Query: 181 GAEAIQALLK--SMDLEQECEQLREELNETN---SETKRKKLTKRIKLLEAFVQSGN--- 232 G Q ++ +DL E + E+ E S + ++ K I E F+ + Sbjct: 175 GCGHYQPSIRRTGLDLTAEWKHQNEDSQEKKIVVSAERVWEILKHITDEECFILGMDPKY 234 Query: 233 -KPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDII 291 +P+WMI+TVLPV P +RP V + G DL +I NN L++ A + Sbjct: 235 ARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHV 294 Query: 292 VRNEKRMLQEAVDALLDNGRRG--RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDY 349 ++ +MLQ V L+DN G RA+ S K PLK++ +KGK+GR R NL+GKRVD+ Sbjct: 295 IQENIKMLQFHVATLVDNDMPGMPRAMQKSGK-PLKAIKARLKGKEGRIRGNLMGKRVDF 353 Query: 350 SGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVW 409 S R+VIT P LR+ Q G+P+ +A L P + + + ++ + +V Sbjct: 354 SARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVR 413 Query: 410 DILDEV-IREHP----------------------VLLNRAPTLHRLGIQAFEPVLIEGKA 446 D + + +R HP V+ NR PTLH++ + ++ Sbjct: 414 DNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWST 473 Query: 447 IQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDV 506 +++ + YNADFDGD+M +HVP ++E + E + ++ I++P +P++ QD Sbjct: 474 FRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDT 533 Query: 507 VLGLYYMTRDCV-----------------NAKGEGMVLTGPKE---AERLYRSGLASLHA 546 + + MT+ V +AK + P+ ++++ + Sbjct: 534 LTAVRKMTKRDVFITREQVMNLLMFLPTWDAKMPQPCILKPRPLWTGKQIFSLIIPGNVN 593 Query: 547 RVKVRITEYEKDANGELVAKTSLKDTTV----GRAILWMIVPKGLPYSIVNQALGKKAIS 602 ++ T +++ G S DT V G I+ ++ K +LG A S Sbjct: 594 MIRTHSTHPDEEDEGPY-KWISPGDTKVMVEHGELIMGILCKK---------SLGTSAGS 643 Query: 603 KMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVI-PEKKHEI---ISEAE 658 +L+ C+ LG F I + G S+GI D + P+ +EI I +A+ Sbjct: 644 -LLHICFLELGHDIAGRFYGNIQTVINNWLLFEGHSIGIGDTIADPQTYNEIQQAIKKAK 702 Query: 659 AEVAEIQEQFQSGLV--TAGERY-----NKVIDIWAAANDRVSKAMMDNLQTETVINRDG 711 +V + ++ + + T G NKV I A D+ + +L Sbjct: 703 DDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARDKTGGSAKKSL---------- 752 Query: 712 QEEKQVSFNSIYMMADSGARGSAAQIRQL---AGMRGLMAK--PDGSIIET--------- 757 +N++ M SG++GS I Q+ G + + K P G T Sbjct: 753 -----TEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDY 807 Query: 758 -PITANFRE-----GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTE 811 P + F E GL +++ G R+GL DTA+KTA +GY+ RRL+ + ++V Sbjct: 808 GPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNY 867 Query: 812 D 812 D Sbjct: 868 D 868 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 26/34 (76%) Query: 910 NKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASR 943 N GE +G +AAQS+GEP TQ+T+ TFH G +S+ Sbjct: 1074 NPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSK 1107 Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust. Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 38/144 (26%) Query: 1219 DILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGE 1278 +I ++ G+ AV + + E+ V + G+ +N +H+ ++ M K G Sbjct: 1356 EIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAK-------------GH 1402 Query: 1279 QVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVA 1338 + +R I NR+ GA + SF+ET VL +AA Sbjct: 1403 LMAITRHGI-NRQ-----DTGA-------------------LMRCSFEETVDVLMDAAAH 1437 Query: 1339 GKRDELRGLKENVIVGRLIPAGTG 1362 + D +RG+ EN+I+G+L GTG Sbjct: 1438 AETDPMRGVSENIIMGQLPKMGTG 1461 >UniRef50_C4M5C2 DNA-directed RNA polymerase n=4 Tax=Entamoeba RepID=C4M5C2_ENTHI Length = 1636 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 169/665 (25%), Positives = 297/665 (44%), Gaps = 93/665 (13%) Query: 234 PEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVR 293 P++MI T++PV PP +RP + +G + + DL LY VI N RLK + + Sbjct: 230 PKFMIFTLIPVPPPCVRPSIVSEGAKESKDDLTVLYENVITANERLKEE-NQKCEGVSEY 288 Query: 294 NEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRS 353 K M + + A + T K+ KS+ + + KQGR R NL+GKRVD+S R+ Sbjct: 289 YNKLMELQTICAKISMKNVKLPETMLRKKNFKSIEERLSSKQGRLRLNLMGKRVDFSART 348 Query: 354 VITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKK------MVEREEAV 407 VI+ P L + + G+P +A L P + + L + A M+ER+ Sbjct: 349 VISPDPNLSMDEVGVPTGVAKILTFPEVVTQHNKEKLQKLVSAGMNDYPGAFMLERKNGQ 408 Query: 408 VW---------DILDEVIRE----HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVC 454 + DI D V R V+ NR P+LHR+ + + ++ +++ Sbjct: 409 TYRLNGSEKIIDIGDTVHRYIMNGDYVIFNRQPSLHRMSMMGHKVRVLPFSTFRMNLCDT 468 Query: 455 AAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT 514 YNADFDGD+M +HVP TLEA+ E LM++ I++P + PI+ QD G Y +T Sbjct: 469 TPYNADFDGDEMNLHVPQTLEARAEVATLMLTPTQIITPQDNGPIMGIVQDTQCGSYLIT 528 Query: 515 R--------------DCV-NAKGE----GMVLTGPK-EAERLYRSGLASLH-ARVKVRIT 553 + C+ N G ++ PK ++++ L +++ R I Sbjct: 529 KRETFIEQLVFYNILQCLDNFDGTVPIPAILKPIPKWTGKQVFTQILPTINFHRGNWSIK 588 Query: 554 EYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILG 613 E K NG VA + ++++ L S+ N++ K S ++ T ++ G Sbjct: 589 ELLK--NGPAVADSD----------VYILDGVHLVGSLRNKSEFGKNRSGIIQTIFKDKG 636 Query: 614 LKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLV 673 ++ T +F ++ T ++ G +VG+ D+V+P+ H+ I A +++ + + Sbjct: 637 MEATKVFFNKTQATVNSWILTRGFTVGVGDIVVPQSVHDSIR------ANVEKSKKEAVK 690 Query: 674 TAGERYNKVIDIWAAANDRVSKAMMDNLQTE--TVINRDGQEEKQVSF------NSIYMM 725 +++ I + A M +NL++E +++ + E ++ N++ M Sbjct: 691 FLSHQHDDEIKVQAG------NTMFENLESELGSLLEKLKNECDSITTKSLKKDNNLLAM 744 Query: 726 ADSGARGSAAQIRQLAGMRGLMA-------------------KPDGSIIETPITAN-FRE 765 DSG++GS I Q+ G K D + N + Sbjct: 745 VDSGSKGSTTNILQMVAFVGKQEINNLRIPFGFYKRTLPHYWKEDYGFVSRGFVENSYVM 804 Query: 766 GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPV 825 GL+ ++F R+G+ DTA+KT+++GY+ R++V +D+ D M Sbjct: 805 GLSPQEFFFHAMAGRQGIIDTAVKTSDTGYIQRKMVKCMEDVQCKYDRTVRRSSGDMVEF 864 Query: 826 IEGGD 830 + GGD Sbjct: 865 MYGGD 869 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 13/122 (10%) Query: 901 RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL 960 +++ IN GE +G IAAQSIG P TQ+T+ TFH G +S + E ++K +L Sbjct: 1065 KNIYERSFINPGEMVGSIAAQSIGAPATQMTLNTFHHAGISSASVTEGVPRLK-----EL 1119 Query: 961 SNVKSVVNSSGKLVITSRNTELKLID---EFGRTKESYKVPYGAVLAKGDGEQVAGGETV 1017 NV + V + +T ++D E +T +PY + D ++ + Sbjct: 1120 LNVSKTPKTPSMNVYLTNDTRESMVDLDKELNKT-----IPYTKLKDLIDNVEIWFDPDI 1174 Query: 1018 AN 1019 AN Sbjct: 1175 AN 1176 >UniRef50_Q3SE61 DNA-directed RNA polymerase n=2 Tax=Paramecium tetraurelia RepID=Q3SE61_PARTE Length = 1751 Score = 186 bits (473), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 197/833 (23%), Positives = 348/833 (41%), Gaps = 149/833 (17%) Query: 85 CEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDM--PLRDIERVLYFE 142 C+ CG +TK + G IEL P H+ FL+ + + + LR + ++ Sbjct: 71 CKTCG----ETKYCQGHFGRIELNKPVYHVGFLQIVKKVLKCICHSCGKLRQPQSEDAWQ 126 Query: 143 SYVVIEGGMTNLERQQILTE----------EQYLDALEEFGDEFDAKMGAEAIQALLKSM 192 S+ + N +R + + ++ + D+F + IQA+ + Sbjct: 127 SFQKAKEHRLNRKRLNEIVKLLGRIEKCETSKHKQEENQGNDDFCGEKIPTRIQAINGQI 186 Query: 193 DLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPL 252 ++ ++ +EL KK+ ++ F + ++P +I+ L V+PP +RP Sbjct: 187 KIQYNTKEAAKELTAERCLEIFKKIRDEDAIILGFTKD-SRPRDLIIKFLLVMPPQVRPA 245 Query: 253 VPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRR 312 + ++ R A +Y+ ++ +NN + A VR +++E V ++D+ + Sbjct: 246 IEMNPARIAQDQYTQIYKSILQKNNEIANCSSDAER---VRLAPELMRE-VAKIIDSEKA 301 Query: 313 GRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKM 372 G+ I + +PLKS+ +KGK+GRFRQNL+GKRVD+ RSVI+ L + + G+P+ + Sbjct: 302 GK-IKMKSTQPLKSIRARLKGKEGRFRQNLMGKRVDFCARSVISPDANLGMDELGVPQIV 360 Query: 373 ALELFKPFIYGKLELR---GLATTIKAAKKMV---------EREEAVVWDILD--EVIRE 418 A +L P + L LA T K +V + +A+ +D D + IR+ Sbjct: 361 ADQLTIPEEVTEYNLERVIQLAKTNKIKYVIVPITDPRSKQRKFQALYFDFTDTEDQIRQ 420 Query: 419 HP---------------VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDG 463 VL NR PTLHR+ + ++ +L+ VC YNADFDG Sbjct: 421 KINQGVIVERCLQDGDFVLFNRQPTLHRMSMMGHRVRILPYSTFRLNLSVCTPYNADFDG 480 Query: 464 DQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKG 522 D+M +HVP + E E + L I++P + +P++ QD +LG T RD + Sbjct: 481 DEMNMHVPQSYETIAELKYLAHVPRQIVTPKSNQPVMGIVQDSLLGCCLFTQRDTFLTRD 540 Query: 523 EGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLK--DTTVGRAILW 580 + M L + + GEL LK + G+ I+ Sbjct: 541 QVMHLMM-------------------------WNEQFTGELPMPAILKPQELWTGKQIMS 575 Query: 581 MIVPK------------------------------GLPYSIVNQALGKKAISKMLNTCYR 610 MI+P+ L I N+ L + +++ C+ Sbjct: 576 MIIPQSINTERGIREDDLRKPNWNADDKSLCIQRGSLVSGIFNKELVGQGAGSVVHLCWL 635 Query: 611 ILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQ--- 667 LG + T+ F + +VG D+ +++E E E E+ Sbjct: 636 DLGAEKTLEFMTSCQRIVNNWLIMHSFTVGCQDIA---PHINLVAETEKRSKEQDEEYIK 692 Query: 668 ----FQSGLVTAGERYN----KVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSF 719 F RY+ +++D + + + + D++ ++ D Q+ Sbjct: 693 LLQIFLDAKKIQDNRYHQKGKRIMDSFEYSFNMKLNKVRDDINSKVTETID-----QIR- 746 Query: 720 NSIYMMADSGARGSA---AQIRQLAGMRGLMAK-----------PDGSIIETP------I 759 N +Y M + ++G A AQI L G + L +K P S + + Sbjct: 747 NCMYKMIWAKSKGEASNLAQITSLVGQQNLESKRIQFGFAYRTLPHFSKFDYGPEARGFV 806 Query: 760 TANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTED 812 +NF +GL ++F T G R GL DTA+KT+ +GY+ R+L+ +D+ V D Sbjct: 807 ASNFFKGLKPTEFFFHTMGGRDGLIDTAVKTSRTGYIQRKLIKAVEDVFVRYD 859 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 37/166 (22%) Query: 1197 NVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVI 1256 N+ E R+E D + ++I ++ G+ A +V E + ++ G+ IN +H+ ++ Sbjct: 1397 NLKEILRLEHVDQRRTTTDDVYEISQVLGIEAARAALVGETRKIFNHYGIYINYRHLYLL 1456 Query: 1257 VRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLAT 1316 M + R+ NR GI + + Sbjct: 1457 YDWMTHRG-------------------RLTAVNRN----------------GINR--IPE 1479 Query: 1317 ESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362 S + +SF+ET +L +AAV + D +RGL EN+I G+L P GTG Sbjct: 1480 VSVLRKSSFEETVEILYDAAVFSEIDHMRGLSENIIFGQLCPHGTG 1525 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 19/30 (63%), Positives = 23/30 (76%) Query: 912 GEAIGVIAAQSIGEPGTQLTMRTFHIGGAA 941 GEA+G IAAQS+GEP TQ+T+ TFH G Sbjct: 1077 GEAVGAIAAQSLGEPTTQMTLNTFHKSGVT 1106 >UniRef50_A9XW86 DNA-directed RNA polymerase (Fragment) n=2 Tax=Malpighiales RepID=A9XW86_9ROSI Length = 1083 Score = 186 bits (471), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 106/304 (34%), Positives = 170/304 (55%), Gaps = 21/304 (6%) Query: 613 GLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGL 672 G+ T DQ+ GF A + S+GIDD++ K ++ + E + +++ + G Sbjct: 1 GMAYTSHILDQVKTLGFQQATATSISLGIDDLLTIPSKGWLVQDVEQQSLILEKHYHYGN 60 Query: 673 VTAGERYNKVIDIWAAANDRVSKAMMDNLQ-TETVINRDGQEEKQVSFNSIYMMADSGAR 731 V A E+ + I+IW A + + + M N + TE FN +++M+ SGAR Sbjct: 61 VHAVEKLRQSIEIWYATXEYLRQEMNSNFRMTE-------------PFNPVHIMSFSGAR 107 Query: 732 GSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTA 791 G+A+Q+ QL GMRGLM+ P G +I+ PI +N REGL++ +Y IS +GARKG+ DTA++T+ Sbjct: 108 GNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTS 167 Query: 792 NSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVL-GRVTAEDV-L 849 ++GYLTRRLV+V Q ++V + DCGT GI ++P G V E + L GRV A+++ + Sbjct: 168 DAGYLTRRLVEVVQHIIVRKTDCGTTRGISVSP--RNGMVPERFFIQTLIGRVLADNIYM 225 Query: 850 KPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHII 909 P I RN + + ++ +R+ +C + +C CYGR G ++ Sbjct: 226 GPRCIAI---RNQDIGIGLVNRFITFRTQSISIRTPFTCRSTSWICRLCYGRSPTFGDLV 282 Query: 910 NKGE 913 GE Sbjct: 283 ELGE 286 >UniRef50_P35084 DNA-directed RNA polymerase II subunit rpb1 n=10 Tax=cellular organisms RepID=RPB1_DICDI Length = 1727 Score = 182 bits (463), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 237/902 (26%), Positives = 376/902 (41%), Gaps = 166/902 (18%) Query: 20 IKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYEC-LCGKYKRL 78 ++ + SPD IR+ S V+ PET Y KP+ GL + K C C Sbjct: 18 VQFGILSPDEIRNMSVARVEHPET--YENGKPKAGGLLDPAMGTIDKTQRCQTCS----- 70 Query: 79 KHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRI--------GLLLDM 130 G + E G GHIELA P HI F+ ++ + LL D Sbjct: 71 ---GTMAECPG-----------HFGHIELAKPVFHIGFIDTVLKILRCVCYHCSKLLTDT 116 Query: 131 PLRDIERVLYFES----YVVIEGGMTNLERQQILTEEQYLDALEEFGDEFD--------- 177 + L + + N + I EE+ L + +E D Sbjct: 117 NEHSFRQALKIRNQKHRLNAVVDCCKNKKVCAIGGEEEEEHDLSKTDEELDKPVKHGGCG 176 Query: 178 ---AKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGN-- 232 K+ E ++ +++ D+ E + + L S + + KRIK ++ N Sbjct: 177 NVLPKITKEDLKIIVEFKDVTDESIEKKSVL----SAERVLNILKRIKDEDSRAMGINPD 232 Query: 233 --KPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDI 290 + +WMI TVLPV PP +RP + +D DL ++ N L+R AP Sbjct: 233 WARADWMIATVLPVPPPPVRPSIMMDTSTRGEDDLTHKLADIVKANRELQRQEKNGAPAH 292 Query: 291 IVRNEKRMLQEAVDALLDNGRRGRAITGSNK-RPLKSLADMIKGKQGRFRQNLLGKRVDY 349 I+ + LQ V +DN G RPLKS+ +KGK+GR R NL+GKRVD+ Sbjct: 293 IIAEATQFLQFHVATYVDNEIPGLPQAQQRSGRPLKSIRQRLKGKEGRIRGNLMGKRVDF 352 Query: 350 SGRSVITVGPYLRLHQCGLPKKMALEL-----FKPFIYGKL-ELRGLATTIKAAKKMVER 403 S R+VIT P L + Q G+P+ +AL L PF K+ EL + K + R Sbjct: 353 SARTVITADPNLSIDQVGVPRSIALNLTYPETVTPFNIDKMRELIRNGPSEHPGAKYIIR 412 Query: 404 EEAVVWDI--LDEVIREH---------------PVLLNRAPTLHRLGIQAFEPVLIEGKA 446 E+ +D+ + +V H V+ NR P+LH++ + ++ Sbjct: 413 EDGTRFDLRFVKKVSDTHLECGYKVERHINDGDVVIFNRQPSLHKMSMMGHRIKVMPYST 472 Query: 447 IQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDV 506 +L+ V + YNADFDGD+M +HVP TLE + E +MM I+SP + P++ QD Sbjct: 473 FRLNLSVTSPYNADFDGDEMNLHVPQTLETRAEVIEIMMVPRQIVSPQSNRPVMGIVQDT 532 Query: 507 VLGLYYMT-RDCVNAKGEGM----------------VLTGPKE---AERLYRSGLASLHA 546 +LG T RDC K M + PK+ ++L+ + ++ Sbjct: 533 LLGSRLFTKRDCFMEKDLVMNILMWLPSWDGKVPPPAILKPKQLWTGKQLFSLIIPDINL 592 Query: 547 RVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKG--LPYSIVNQALGKKAISKM 604 ++ T +K+ N + S DT V I+ +G L + ++LG A + Sbjct: 593 -IRFTSTHNDKEPN-----ECSAGDTRV-------IIERGELLAGILCKRSLG-AANGSI 638 Query: 605 LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPE----KKHEIISEAEAE 660 ++ G +F DQ + G ++GI D + K IS A+ + Sbjct: 639 IHVVMNEHGHDTCRLFIDQTQTVVNHWLINRGFTMGIGDTIADSATMAKVTLTISSAKNQ 698 Query: 661 VAEI-----QEQFQ-----SGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRD 710 V E+ +QF+ S + T ++ N+V++ A D + D+L + Sbjct: 699 VKELIIKAQNKQFECQPGKSVIETFEQKVNQVLN---KARDTAGSSAQDSLSED------ 749 Query: 711 GQEEKQVSFNSIYMMADSGARGSAAQIRQL---AGMRGLMAK--PDGSIIET-------- 757 N++ M +G++GS I Q+ G + + K P G T Sbjct: 750 ---------NNLKAMVTAGSKGSFINISQMMACVGQQNVEGKRIPFGFQSRTLPHFTKDD 800 Query: 758 --PITANFRE-----GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVT 810 P + F E GL ++F G R+GL DTA+KT+ +GY+ RRLV +D+ + Sbjct: 801 YGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDVSIK 860 Query: 811 ED 812 D Sbjct: 861 YD 862 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 41/191 (21%), Positives = 78/191 (40%), Gaps = 45/191 (23%) Query: 1219 DILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGE 1278 +I+++ G+ AV ++ E++ V G +N +H+ ++ M Sbjct: 1352 EIIQVLGIEAVRNALLKELRAVISFDGSYVNYRHLAILADVM------------------ 1393 Query: 1279 QVEYSRVKIANRELEANGKVGATYSRDLLGITKASL--ATESFISAASFQETTRVLTEAA 1336 TY L+ IT+ + + SF+ET +L +AA Sbjct: 1394 ----------------------TYRGHLMAITRHGINRVETGPLMRCSFEETVEILMDAA 1431 Query: 1337 VAGKRDELRGLKENVIVGRLIPAGTG---YAYHQDRMRRRAAGEAPAAPQVTAEDASASL 1393 + + D+++G+ EN+I+G+L P GTG +QD ++ + P V+ D S Sbjct: 1432 MFSETDDVKGVTENIILGQLPPLGTGSFEVFLNQDMIKNAHSIALPEPSNVSYPDTPGSQ 1491 Query: 1394 AELLNAGLGGS 1404 + G G + Sbjct: 1492 TPSYSYGDGST 1502 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 19/32 (59%), Positives = 25/32 (78%) Query: 912 GEAIGVIAAQSIGEPGTQLTMRTFHIGGAASR 943 GE +G +AAQSIGEP TQ+T+ TFH G +S+ Sbjct: 1080 GEMVGALAAQSIGEPATQMTLNTFHYAGVSSK 1111 >UniRef50_Q0U9K8 DNA-directed RNA polymerase n=242 Tax=root RepID=Q0U9K8_PHANO Length = 1720 Score = 182 bits (463), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 180/664 (27%), Positives = 291/664 (43%), Gaps = 118/664 (17%) Query: 233 KPEWMILTVLPVLPPDLRPLVPLDG---GRFATSDLNDLYRRVINRNNRLKRLLDLAAPD 289 +PEWMI+TVLPV PP +RP + +DG G DL +I N R++ + AP Sbjct: 242 RPEWMIMTVLPVPPPPVRPSISVDGTGQGMRGEDDLTYKLGDIIRANQRVQECISEGAPQ 301 Query: 290 IIVRNEKRMLQEAVDALLDNGRRGRAITGSNK---RPLKSLADMIKGKQGRFRQNLLGKR 346 I+ + ++Q V +DN G I SN+ RPLK++ +KGK+GR R NL+GKR Sbjct: 302 HILNEFEALVQYHVATYMDNDANG--IPPSNQKSGRPLKTIRGRLKGKEGRLRGNLMGKR 359 Query: 347 VDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEA 406 VD+S R+VIT P L L Q G+P+ +A L P + K + L + ++ Sbjct: 360 VDFSARTVITGDPNLSLDQVGVPRSIARTLTYPEVVTKFNISKLTSLVRNGPNQHPGANY 419 Query: 407 VV-----------------------WDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIE 443 V+ W + + + ++ NR P+LH+ + ++ Sbjct: 420 VIKSDGVRLDLKHNKNLDDLRLQYGWKVERHIDDDDVIIFNRQPSLHKESMMGHRVKVMP 479 Query: 444 GKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPS 503 +++ V + YNADFDGD+M +HVP + E + E + L M I+SP +P++ Sbjct: 480 YSTFRMNLSVTSPYNADFDGDEMNLHVPQSDETRAEIQNLCMVPKQIVSPQKNQPLMGIV 539 Query: 504 QDVVLGLYYMTRD----------CVN---AKGEGMVLTGPKEAERLYRSGLASLHARVKV 550 QD +LG+Y M+R C+ +G+V R +G + Sbjct: 540 QDTLLGVYKMSRRDNFLPIEQVMCIMMWVPDWDGIVPEPAILKPRPLWTGKQIISMAFPK 599 Query: 551 RITEYEKDANGELVAKTSLKDTTV----GRAILWMIVPK-------GLPYSIVNQALGKK 599 + + D + + +D ++ G +L + K G+ + I N+ + Sbjct: 600 EVNIWRSDGDSKPSPWNDFQDKSLLIKGGELLLGSVTKKIVGATAGGVIHIIFNELSSGE 659 Query: 600 AISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVI-PEKKHEIISE-- 656 A+ K N+C RI+ +++ GF S+GI D V PE +I SE Sbjct: 660 AV-KFFNSCQRIVNW--------WLLHHGF--------SLGIGDTVPDPETAAKIASEVA 702 Query: 657 -AEAEVAEI-----QEQFQ--SGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVIN 708 A+A+V EI +++ + G+ G +KV + A ++L+ Sbjct: 703 KAKAKVEEIVLEATRDELEPLPGMTIRGTFESKVQKYLNEGREGGGTAAQNSLK------ 756 Query: 709 RDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAK-----PDGSIIET------ 757 FN++ SG++GS I Q+ + G A P G T Sbjct: 757 ---------DFNNVVQTVISGSKGSTVNISQMVSLVGQQAVEGQRIPFGFKYRTLPHFTK 807 Query: 758 ----PITANFRE-----GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLV 808 P + F E GL ++F R+GL DTA+KTA +GY+ RRLV +D++ Sbjct: 808 DDYSPESRGFVENSYLRGLTPAEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVM 867 Query: 809 VTED 812 V D Sbjct: 868 VKYD 871 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 26/32 (81%) Query: 912 GEAIGVIAAQSIGEPGTQLTMRTFHIGGAASR 943 GE +GV+AAQSIGEP TQ+T+ TFH G +S+ Sbjct: 1082 GEMVGVLAAQSIGEPATQMTLNTFHFAGVSSK 1113 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 20/40 (50%), Positives = 29/40 (72%) Query: 1323 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362 SF+ET +L EAA G+ D+ RG+ EN+++G+L P GTG Sbjct: 1427 CSFEETVEILLEAAGFGELDDCRGVSENIMLGQLAPMGTG 1466 >UniRef50_A1YIC5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Chytriomyces hyalinus RepID=A1YIC5_9FUNG Length = 960 Score = 182 bits (463), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 180/684 (26%), Positives = 292/684 (42%), Gaps = 109/684 (15%) Query: 215 KKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLD---GGRFATSDLNDLYRR 271 +K+T L ++PEWMI TV+PV PP +RP V +D GG+ DL + Sbjct: 108 EKITDETCRLLGLNPDSSRPEWMIFTVIPVPPPCMRPSVHIDVANGGK-GEDDLTHMLTN 166 Query: 272 VINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRG-RAITGSNKRPLKSLADM 330 +I NN LL K LQ + +DN G R +KSL+ Sbjct: 167 IIRYNN----LLGKNESSKTAIEYKEQLQIHITTYIDNEVSGVPPALQKGGRMIKSLSAR 222 Query: 331 IKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGL 390 +KGK+GR R +L+GKRVD+S R+VIT P++ + + G+P +A L P L + Sbjct: 223 LKGKEGRIRGHLMGKRVDFSARTVITGDPHISIEEVGVPLSVAKTLTFPERVTSYNLDRM 282 Query: 391 ATTIKAAK-------------KMVEREEAVVWDILD--EVIREH-----PVLLNRAPTLH 430 + AK + ++ E A +++ +++ H VL NR P+LH Sbjct: 283 QALVNNAKNYPGARYVINERGRRIDLEVAKTTPLIEIGDIVERHMVTGDTVLFNRQPSLH 342 Query: 431 RLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNI 490 ++ + A ++ + +L+ VCA YNADFDGD+M +H+P + E E + L M ++ + Sbjct: 343 KMSMMAHIVRVMPYSSFRLNVNVCAPYNADFDGDEMNLHMPQSYETVAELQTLSMVSSLL 402 Query: 491 LSPANGEPIIVPSQDVVLGLYYMT-----------RDCVNAKGEGMVLTGP--------- 530 +SP + +P+ QD + G+ +T D V E V+ P Sbjct: 403 VSPQSNKPVNGLVQDALCGIRKLTMRDTFVNFEDMMDLVMCLKEFPVIPPPAIFKPIPLW 462 Query: 531 --KEAERLY-----RSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIV 583 K+ L +G HA + KD N K + + +++ Sbjct: 463 TGKQIISLCLPDIDLTGNTLTHADHEDIFRSTTKDLNETCTRKAESEFYSATPTDSRVLI 522 Query: 584 PKGLPYSIVNQALGKKAISK----MLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASV 639 G+ IV+ L KK + +++ Y G + F D A+ SG SV Sbjct: 523 QSGI---IVHGYLCKKTVGASSGGIVHIIYNDHGPRAACDFIDNSSRIVNAWLTNSGFSV 579 Query: 640 GIDDMVIPEKKHEIISEA-EAEVAEIQEQFQS----------GLVTAGERYNKVIDIWAA 688 GI D ++ E H + S + ++ ++Q+ +S + N+++ + A Sbjct: 580 GIGDALVSEITHAVFSSTIDTQLHKVQKTIESYHANELKPEGNFDCEQTKENQIVGLLAK 639 Query: 689 ANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRG--- 745 A D K T+I+ G + N++ M ++G++GS I Q++ G Sbjct: 640 ARDSAGKT--------TLIS--GHPD-----NNLKQMVEAGSKGSVLNICQVSACVGQQM 684 Query: 746 ----------------LMAKPDGSIIETPITAN-FREGLNVLQYFISTHGARKGLADTAL 788 K D S N F +GL + F G R+GL DTA+ Sbjct: 685 VEGKRIPFGFKDRTLPHFTKYDHSPAARGFVRNSFVKGLTPSELFFHAMGGREGLIDTAI 744 Query: 789 KTANSGYLTRRLVDVAQDLVVTED 812 KTA +GY+ RRLV +D+ V D Sbjct: 745 KTAETGYIQRRLVKALEDITVKSD 768 >UniRef50_C4VAM1 DNA-directed RNA polymerase n=1 Tax=Nosema ceranae BRL01 RepID=C4VAM1_NOSCE Length = 1612 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 222/899 (24%), Positives = 378/899 (42%), Gaps = 175/899 (19%) Query: 19 AIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRL 78 +I+ L SP+ IR S +V PET+ KP GL ++ Sbjct: 12 SIQFGLFSPEEIRKASVVQVIHPETMENGFPKP--GGLIDLKM---------------GT 54 Query: 79 KHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERV 138 R +C C + GHIEL P H+ ++ S+I +L E V Sbjct: 55 TERAFLCSSCEKDNFSCP---GHFGHIELTKPMFHVGYM----SKIKKIL-------ECV 100 Query: 139 LYFESYVVIEGGMT----NLERQQILTEEQYLDALEEFGDEFDAKMGAEAI-----QALL 189 Y+ S + I+ N T+ L E G F + + L+ Sbjct: 101 CYYCSKIKIDKKHLKKDLNFVWNSCKTKSVCEGELTEAG--FSGCGNKQPVIKKEGMGLV 158 Query: 190 KSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDL 249 M E++ + + LN KK++ F +KP+W+++TVL V PP + Sbjct: 159 AFMKGEEDSDG-KVILNGERVHNILKKISDEDSTYLGFDTKYSKPDWLVITVLLVPPPSV 217 Query: 250 RPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDN 309 RP + ++G A DL ++ N LK+ AP ++R+ +++LQ + ++DN Sbjct: 218 RPSIVMEGMLRAEDDLTHKLADIVKANTYLKKYELEGAPGHVIRDYEQLLQFHIATMIDN 277 Query: 310 GRRGR--AITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCG 367 G+ A+ S RP+KS++ +KGK+GR R NL+GKRVD+S RSVIT + L + G Sbjct: 278 DLSGQPQALQKSG-RPIKSISARLKGKEGRVRGNLMGKRVDFSARSVITPDANISLEEVG 336 Query: 368 LPKKMAL-----ELFKPFIYGKL---------ELRGLATTIKAAKKMVEREEAVVWDILD 413 +P ++A E P+ +L E G I++ + ++ L+ Sbjct: 337 VPLEIAKIHTFPETITPYNIERLTRLVSNGPNEYPGANYVIRSDGQRIDLNFNRGDIKLE 396 Query: 414 E--VIREH-----PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQM 466 E ++ H VL NR P+LH++ + ++EGK +L+ + YNADFDGD+M Sbjct: 397 EGYIVERHMQNGDVVLFNRQPSLHKMSMMGHFVRVMEGKTFRLNLSCTSPYNADFDGDEM 456 Query: 467 AVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGM 525 +H+P + + E L + + +LSP + P++ QD + L T RD K E M Sbjct: 457 NLHMPQSYNTKAELEELCLVSKQVLSPQSNRPVMGIVQDSLTSLRLFTLRDTFFDKRETM 516 Query: 526 VLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTT------------ 573 L LY + +++YE + N E + KTS+ D Sbjct: 517 QL--------LY-----------SINLSKYE-NFNNEDMHKTSIMDLLNYPTISYPKKLW 556 Query: 574 VGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAA 633 G+ I I+P + YS V+ + + + +T VI + + +G Sbjct: 557 TGKQIFSYILP-NIVYSAVSNEHDENDLENLKDT---------VVIIRNGELLSGIIDKK 606 Query: 634 RSGASV-GIDDMVIPEKKHEIISEAEAEVAEIQEQF------------------------ 668 G + G+ ++ + H+ I+ + +I +F Sbjct: 607 SVGTTQGGLIHIIANDFSHKRITSFFDDTQKIMNKFITFINAFSIGIGDAIANKETMVQV 666 Query: 669 QSGLVTAGERYNKVIDIWAAANDRVSK----AMMDNLQTET--VIN--RD---GQEEKQV 717 QS + A + K+I+ A +++ + +M ++ +++ ++N RD K + Sbjct: 667 QSSIENAKYQVEKLIE--RAQRNKLERLPGMSMKESFESQVNYILNKPRDISGTSASKSL 724 Query: 718 SF-NSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFR------------ 764 +F N++ M +G++GS I Q+ G +G I P N+R Sbjct: 725 NFCNNMRTMVLAGSKGSFINISQVTACLG-QQNVEGKRI--PFGFNYRSLPHFSKGDYSG 781 Query: 765 -----------EGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTED 812 +GL +++ G R+GL DTA+KTA +GY+ RRLV +D V D Sbjct: 782 KSRGFVENSYVKGLAPEEFYFHAMGGREGLIDTAIKTAETGYIQRRLVKAMEDATVGLD 840 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 18/35 (51%), Positives = 26/35 (74%) Query: 908 IINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAAS 942 II E +G +AAQS+GEP TQ+T+ TFH+ G ++ Sbjct: 1019 IIAPSEMVGTLAAQSVGEPATQMTLNTFHLAGVSA 1053 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 1306 LLGITKASLATESF--ISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362 L GIT+ + F + ASF+ET +L +AA A + + +G+ EN+++G+L P GTG Sbjct: 1321 LTGITRHGVNKVGFGALKRASFEETVDILLDAAYAAENNVTKGITENIMMGQLAPLGTG 1379 >UniRef50_Q9BMP2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Stylonychia mytilus RepID=Q9BMP2_STYMT Length = 1678 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 168/659 (25%), Positives = 293/659 (44%), Gaps = 95/659 (14%) Query: 224 LEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLL 283 L F ++PE MI+ L V PP +RP V + + DL Y++++ N L+ + Sbjct: 122 LMGFNPRISRPENMIIKNLAVAPPPVRPSVSMSNTMRSEDDLTYCYQKILQTNITLQNQI 181 Query: 284 DLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNK-RPLKSLADMIKGKQGRFRQNL 342 + A + + LQ V ++DN +G+ +PLK++ ++GK+GR R NL Sbjct: 182 NRGANMTTINELRTNLQYYVATVMDNEIQGQPTQKHKSGKPLKAIRARLRGKEGRLRGNL 241 Query: 343 LGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVE 402 +GKRVD+S R+VIT P L+L Q G+P+++AL L P I +K++E Sbjct: 242 MGKRVDFSARTVITPDPNLQLDQLGVPQQIALNLTVPETVTN-------ENIDEMRKLIE 294 Query: 403 REEAVVWDILDEVIRE------------------HP-------------VLLNRAPTLHR 431 R +W +IR HP V+ NR P+LH+ Sbjct: 295 RGPN-IWPGAKYIIRHDDRQIDLSQMRNRSEATIHPGFKVERHLRDNDYVIFNRQPSLHK 353 Query: 432 LGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNIL 491 + + ++ +L+ V YNADFDGD+M +HVP + E E + +M N I+ Sbjct: 354 MSLMGHRVKVLPFSTFRLNLSVTTPYNADFDGDEMNMHVPQSYETMAEIKEIMAVPNQIV 413 Query: 492 SPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKV 550 SP + +P++ QD +LG+ T +D K M L + Y + +K Sbjct: 414 SPQSNKPVMGIVQDSLLGVMLFTLKDTFIEKELVMQLLMWAK----YEDDKFPMPTILKP 469 Query: 551 RITEYEKDANGELVAKTSLKDTTVGRAILW-------MIVPKGLPYSIVNQALGKKAISK 603 R K ++ +L+ + ++W +++ KG ++ L K I Sbjct: 470 RPLWTGKQIFSLIIPDINLQKVGEKKGLIWDSAGDLNILIRKG---ELICGNLTKGTIGS 526 Query: 604 ----MLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMV----IPEKKHEIIS 655 M++ ++ G F + ++G +VG+ D++ I +K + ++ Sbjct: 527 SSGGMIHIIWKEKGPYCCRDFLSNTQLIINNWLHQNGFTVGVQDIIAKKEIVQKIRDSMT 586 Query: 656 EAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMD--NLQTETVINRDGQE 713 + + +V +IQ++ Q G + + + + A+ N ++KA D N+ + Sbjct: 587 KFKRDVTKIQQKAQLGKLKSQPGKSMMESFEASVNQCLNKARDDCGNMALADL------- 639 Query: 714 EKQVSFNSIYMMADSGARGSAAQIRQL---AGMRGLMAK--PDGSIIET----------P 758 S+N + M +G++GS I Q+ G + + K P G + P Sbjct: 640 ---SSWNRLKAMVYAGSKGSNLNISQIMACVGQQNVEGKRIPFGFYKRSLPHFSKDDFGP 696 Query: 759 ITANFRE-----GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTED 812 + F E GL ++F G R+GL DTA+KTA +GY+ RRL+ +D++V D Sbjct: 697 ESKGFVENCYLNGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKALEDVMVKYD 755 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 42/146 (28%) Query: 1219 DILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGE 1278 +ILR+ G+ AV ++NE++ V G+ +N +H+ + M ++ Sbjct: 1248 EILRVLGIEAVRMSLINELRFVLSSYGIYVNYRHLSTLCDVMTQRGI------------- 1294 Query: 1279 QVEYSRVKIANRELEANGKVGATYSRDLLGITKASL--ATESFISAASFQETTRVLTEAA 1336 L IT+ + S + SF+ET +L EAA Sbjct: 1295 ---------------------------LTAITRHGINRVDSSPLRKCSFEETVEILLEAA 1327 Query: 1337 VAGKRDELRGLKENVIVGRLIPAGTG 1362 V + D L+G+ EN+I+G+L P GTG Sbjct: 1328 VFAETDPLKGITENIIMGQLAPFGTG 1353 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 18/36 (50%), Positives = 27/36 (75%) Query: 908 IINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASR 943 ++N GE +G I AQS+GEP TQ+T+ TFH G +++ Sbjct: 973 LVNPGEMVGSIGAQSMGEPATQMTLNTFHFAGVSAK 1008 >UniRef50_Q9LVH0 DNA-directed RNA polymerase n=7 Tax=Eukaryota RepID=Q9LVH0_ARATH Length = 1383 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 172/669 (25%), Positives = 296/669 (44%), Gaps = 116/669 (17%) Query: 233 KPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIV 292 +PE +I+T + V P +RP V + G + +DL +++I N L ++L + P Sbjct: 249 RPENLIITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILGNASLHKIL--SQPTSSP 306 Query: 293 RNEK--RMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYS 350 +N + +Q V +++ RG + PL + +KGK GRFR NL GKRV+++ Sbjct: 307 KNMQVWDTVQIEVARYINSEVRG-CQNQPEEHPLSGILQRLKGKGGRFRANLSGKRVEFT 365 Query: 351 GRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIK--------------- 395 GR+VI+ P L++ + G+P MA L P + + L ++ Sbjct: 366 GRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGARNVRYP 425 Query: 396 --AAKKMVE------REEAVVWDILDEVIRE-HPVLLNRAPTLHRLGIQAFEPVLIEGKA 446 +++ +V +E + I+D ++E VL NR P+LHR+ I ++ + Sbjct: 426 DGSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQPSLHRMSIMCHRARIMPWRT 485 Query: 447 IQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDV 506 ++ + VC YNADFDGD+M +HVP T EA+ EA LM NN+ +P NGE ++ +QD Sbjct: 486 LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGEILVASTQDF 545 Query: 507 VLGLYYMTRD-----------CVNAKGEGM--------VLTGPKE---AERLYRSGLASL 544 + + +TR + G+GM + P E ++++ S L Sbjct: 546 LTSSFLITRKDTFYDRAAFSLICSYMGDGMDSIDLPTPTILKPIELWTGKQIF-SVLLRP 604 Query: 545 HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPY----SIVNQALGKKA 600 +A ++V +T K+ N + + +T M + G Y +++ LGK Sbjct: 605 NASIRVYVTLNVKEKNFK-KGEHGFDET--------MCINDGWVYFRNSELISGQLGKAT 655 Query: 601 ISK-----MLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDM-----VIPEKK 650 + + + R + +++ + G S+GIDD+ + E+K Sbjct: 656 LGNGNKDGLYSILLRDYNSHAAAVCMNRLAKLSARWIGIHGFSIGIDDVQPGEELSKERK 715 Query: 651 HEI---ISEAEAEVAEIQE---QFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTE 704 I + ++ E Q ++GL A ++ I + KA M L Sbjct: 716 DSIQFGYDQCHRKIEEFNRGNLQLKAGLDGAKSLEAEITGILNTIREATGKACMSGLHWR 775 Query: 705 TVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMA-----KPDGSI----- 754 NS +M+ G++GS I Q+ G PDG I Sbjct: 776 ---------------NSPLIMSQCGSKGSPINISQMVACVGQQTVNGHRAPDGFIDRSLP 820 Query: 755 -----IETP-----ITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVA 804 ++P + +F GL ++F T G R+GL DTA+KTA++GY++RRL+ Sbjct: 821 HFPRMSKSPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKAL 880 Query: 805 QDLVVTEDD 813 +DL+V D+ Sbjct: 881 EDLLVHYDN 889 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 23/34 (67%), Positives = 26/34 (76%) Query: 909 INKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAAS 942 I G AIG I AQSIGEPGTQ+T++TFH G AS Sbjct: 1025 IEAGTAIGTIGAQSIGEPGTQMTLKTFHFAGVAS 1058 >UniRef50_C5DJG5 DNA-directed RNA polymerase n=3 Tax=Saccharomycetales RepID=C5DJG5_LACTC Length = 1460 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 184/701 (26%), Positives = 306/701 (43%), Gaps = 110/701 (15%) Query: 224 LEAFVQSGNKPEWMILTVLPVLPPDLRPLVPL-DGGRFATSDLNDLYRRVINRNNRLKRL 282 +++ V+SG +PE I LP P +RP V + D DL ++ ++ +K Sbjct: 244 IDSTVKSG-RPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAG 302 Query: 283 LDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAI-----TGSNKRPLKSLADMIKGKQGR 337 L+ + + LQ AV +++ A+ TG +P++ +KGKQGR Sbjct: 303 LEKGISINNMMEQWDYLQLAVAMYINSDSVNPAMMPGGSTGGKTKPIRGFCQRLKGKQGR 362 Query: 338 FRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFI---YGKLELRGLATT- 393 FR NL GKRVD+SGR+V++ P L + + +P ++A L P + Y K +L+ L Sbjct: 363 FRGNLSGKRVDFSGRTVVSPDPNLSIDEVAVPDRVAKVLTYPEMVTRYNKQKLQQLVING 422 Query: 394 ---IKAAKKMVEREEAVVWDI-------------LDEVIREH-----PVLLNRAPTLHRL 432 A +++++E ++ +V+ H VL NR P+LHRL Sbjct: 423 PNEHPGANYLLKKDEEARRNLRYGDRMKLARNLQYGDVVERHLEDGDVVLFNRQPSLHRL 482 Query: 433 GIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILS 492 I + + + +L+ VC YNADFDGD+M +HVP T EA+ EA LM NN+L+ Sbjct: 483 SILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLT 542 Query: 493 PANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVL------------------------ 527 P +GEPII +QD + G Y ++ +D ++ E + L Sbjct: 543 PKSGEPIIAATQDFITGSYLISHKDSFFSRAEFVQLLSMMSDGNLQFDIPPPSIMKPYYM 602 Query: 528 -TGPKEAERLYRSG-----LASLHARVKVRITEYEKDANGELVAKTSLKDTTV---GRAI 578 TG + L R + +L A+ KV I +K E+ S+ D V G I Sbjct: 603 WTGKQVFSLLIRPNKESPVVINLDAKNKVYIPPKDKSLPNEM----SINDGYVVIRGSKI 658 Query: 579 LWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGAS 638 L ++ K + LG + T R G + +++ + G S Sbjct: 659 LSGVMDKSV--------LGDGKKHSVFYTILRDFGPQEAAFAMNRMAKLCARFLGNRGFS 710 Query: 639 VGIDDMV----IPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVS 694 +GI+D+ + KK ++ +A A+ + + F G + N+ + A +S Sbjct: 711 IGINDVTPGFELKNKKEIMVEDAYAKCDALIDLFNKGKLETQPGCNEEQTLEAKIGGLLS 770 Query: 695 KAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMA-----K 749 K + E I ++ + NS +MA+ G++GS + Q+ + G Sbjct: 771 KVREE--VGEVCI------KELDNLNSCLIMANCGSKGSTLNVSQMVAVVGQQIISGNRV 822 Query: 750 PDG----------SIIETP-----ITANFREGLNVLQYFISTHGARKGLADTALKTANSG 794 PDG +TP + +F GL+ ++ R+GL DTA+KTA +G Sbjct: 823 PDGFQDRSLPHFLKNSKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETG 882 Query: 795 YLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPL 835 Y++RRL+ +DL D+ + GGD +P+ Sbjct: 883 YMSRRLMKSLEDLSCQYDNTIRTSSNGIVQFTYGGDGLDPI 923 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 25/34 (73%) Query: 909 INKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAAS 942 + G A+G + A SIGEPGTQ+T++TFH G AS Sbjct: 1082 VEPGTAVGAVGAHSIGEPGTQMTLKTFHFAGVAS 1115 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 41/64 (64%), Gaps = 2/64 (3%) Query: 1301 TYSRDLLGITKASLAT--ESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIP 1358 TY ++LGIT+ L+ +S + ASF++TT L +AA K+D + G+ E +I+G+ + Sbjct: 1362 TYKGEILGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTMS 1421 Query: 1359 AGTG 1362 GTG Sbjct: 1422 IGTG 1425 >UniRef50_D1ISC7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Vitis vinifera RepID=D1ISC7_VITVI Length = 510 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 96/240 (40%), Positives = 140/240 (58%), Gaps = 15/240 (6%) Query: 726 ADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLAD 785 A+ RG+A+Q+ QL GMRGLM+ P G +I+ PI +N REGL++ +Y IS + RKG+ D Sbjct: 258 AEQQTRGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYEVRKGVVD 317 Query: 786 TALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVL-GRVT 844 T ++T++ GYLTRRLV+V Q +VV DCGT GI ++P G + E + + L GRV Sbjct: 318 TVVRTSDVGYLTRRLVEVVQHIVVRRTDCGTIRGISVSP--RNGMIPERIFIQTLIGRVL 375 Query: 845 AEDVLKPGTADILVPRNTLLHEQ-----WCDLLEENSVDAVKVRSVVSCDTDFGVCAHCY 899 A+D+ + PR + Q + + + +R+ +C + +C CY Sbjct: 376 ADDIY-------MGPRCIAIQNQDIGIGFVNRFITFQAQTILIRTPFTCKSTSWICRLCY 428 Query: 900 GRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIK 959 GR G ++ GE +G+IA QSIGEPGTQLT+RTFH GG + AE + N + K Sbjct: 429 GRSPTHGDLVELGEVVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRALSNFDNFK 488 Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 120/232 (51%), Gaps = 19/232 (8%) Query: 448 QLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVV 507 +++ L +NADFDGDQM VHVPL+LEAQ EAR LM S N+LSPA G+PI +P+QD++ Sbjct: 30 KVYKLFSDGFNADFDGDQMVVHVPLSLEAQSEARLLMFSHMNLLSPAIGDPISIPTQDML 89 Query: 508 LGLYYMTR-------DCVNA-KGEGMVLTGP------KEAERLY---RSGLASLHARVKV 550 +GLY +T+ D + A + + + L P KE +Y G SL+ ++ Sbjct: 90 IGLYVLTKPFFCNSYDAIGAYRHKRINLYSPLWLRVKKEIPCIYIRTTVGHISLYREIEE 149 Query: 551 RITEY--EKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTC 608 I + + G S + + + + +++ + + N+ + A+ ++++ Sbjct: 150 AIQGFCRARSRKGSFTTTDSNPLSNLTQQNMGVLMTERVNLVFHNKVIDGTAMKRLISRL 209 Query: 609 YRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAE 660 G+ T DQ+ GF + + S+GIDD++ K ++ +AE + Sbjct: 210 IDHFGMAYTSHILDQVKTLGFQQSTATSISLGIDDLLTIPSKGWLVQDAEQQ 261 >UniRef50_C5YGY9 DNA-directed RNA polymerase n=716 Tax=Eukaryota RepID=C5YGY9_SORBI Length = 1857 Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 227/926 (24%), Positives = 380/926 (41%), Gaps = 178/926 (19%) Query: 6 KFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPV 65 +F + + + + ++ + SPD IR S +++ ET+ KP+ GL R+ G + Sbjct: 4 RFPYSPAEVAKVELVQFGILSPDEIRQMSVVQIEHAETM--ERGKPKPGGLSDPRL-GTI 60 Query: 66 KDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPS--R 123 R + CE C + + GH+ELA P HI F+K++ S R Sbjct: 61 D--------------RKIKCETCMAGMAECP---GHFGHLELAKPMFHIGFIKTVLSIMR 103 Query: 124 IGLLLDMPLRDIERVLYFESYVVIEGGMTNLER-------QQILTEEQYLDALEEFGDEF 176 + E F+ + I L+R +++ LD E+ DE Sbjct: 104 CVCFNCSKILADEDETKFKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQEQDTDEP 163 Query: 177 DAK---MGAEAIQALLKSMDLEQECEQLREELNETNS---ETKRKKLT---------KRI 221 K GA+ + M + E + +++ ++ + +RK++ KRI Sbjct: 164 VKKRGGCGAQQPNITVDGMKMVAEFKAPKKKSDDQDQLPEPVERKQILSAERVLNVLKRI 223 Query: 222 K----LLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNN 277 LL +P+WMIL VLPV PP +RP V +D + DL +I N Sbjct: 224 SDEDCLLLGLNPKYARPDWMILQVLPVPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNE 283 Query: 278 RLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRA-ITGSNKRPLKSLADMIKGKQG 336 L+R AP I+ ++LQ + DN G+ T + RP+KS+ +K K+G Sbjct: 284 NLRRQERNGAPAHIITEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEG 343 Query: 337 RFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI-- 394 R R NL+GKRVD+S R+VIT P + + + G+P +AL L P + L + Sbjct: 344 RIRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEY 403 Query: 395 -------KAAKKMVEREEAVVWDI------------LDEVIREHP-----VLLNRAPTLH 430 K K + RE+ D+ L + H VL NR P+LH Sbjct: 404 GPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLH 463 Query: 431 RLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNI 490 ++ I ++ +L+ V + YNADFDGD+M +HVP + E + E LMM I Sbjct: 464 KMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCI 523 Query: 491 LSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKV 550 +SP + P++ QD +LG +T+ R L + V + Sbjct: 524 VSPQSNRPVMGIVQDTLLGCRKITK----------------------RDTL--IEKDVFM 559 Query: 551 RITEYEKDANGELVAKTSLKDTTV--GRAILWMIVPKGLPY------------------- 589 I + +D +G++ A LK + G+ + +I+PK + Sbjct: 560 NILMWWQDFDGKIPAPAILKPRPIWTGKQVFNLIIPKQINLIRFSAWHSEEEKGFITPGD 619 Query: 590 --------SIVNQALGKKAI----SKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGA 637 +++ L KK++ +++ + +G F + + ++G Sbjct: 620 TMVRIEKGELLSGTLCKKSLGTGTGSLIHIIWEEVGPDAARKFLGHTQWLVNYWLLQNGF 679 Query: 638 SVGIDDMVIP----EKKHEIISEAEAEVAEI-------QEQFQSGLVTAGERYNKVIDIW 686 S+GI D + + ++ I +A+ EV E+ Q + + G N+V + Sbjct: 680 SIGIGDTIADASTMQTINDTICKAKDEVKELIKKAHEKQLEAEPGRTMMESFENRVNQVL 739 Query: 687 AAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLA---GM 743 A D + +L N++ M +G++GS I Q+ G Sbjct: 740 NKARDDAGSSAQKSLSES---------------NNLKAMVTAGSKGSFINISQMTACVGQ 784 Query: 744 RGLMAK--PDGSIIET----------PITANFRE-----GLNVLQYFISTHGARKGLADT 786 + + K P G I T P + F E GL ++F G R+GL DT Sbjct: 785 QNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDT 844 Query: 787 ALKTANSGYLTRRLVDVAQDLVVTED 812 A+KT+ +GY+ RRLV +D++V D Sbjct: 845 AVKTSETGYIQRRLVKAMEDIMVKYD 870 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/160 (24%), Positives = 70/160 (43%), Gaps = 44/160 (27%) Query: 1219 DILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGE 1278 +++ + G+ AV R +++E++ V G +N +H+ ++ M Sbjct: 1353 EVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTM------------------ 1394 Query: 1279 QVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESF--ISAASFQETTRVLTEAA 1336 TY L+ IT+ + + SF+ET +L +AA Sbjct: 1395 ----------------------TYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAA 1432 Query: 1337 VAGKRDELRGLKENVIVGRLIPAGTGYA--YHQDRMRRRA 1374 V + D LRG+ EN+++G+L P GTG Y D+M ++A Sbjct: 1433 VYAESDHLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQA 1472 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 11/76 (14%) Query: 908 IINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVV 967 ++ GE IG +AAQSIGEP TQ+T+ TFH G +++ ++ + ++ ++ Sbjct: 1075 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNV-----------TLGVPRLREII 1123 Query: 968 NSSGKLVITSRNTELK 983 N + K+ S + LK Sbjct: 1124 NVAKKIKTPSLSVYLK 1139 >UniRef50_D2V0G9 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2V0G9_NAEGR Length = 1426 Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 228/907 (25%), Positives = 372/907 (41%), Gaps = 155/907 (17%) Query: 20 IKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLK 79 IK ++ +P+ IR S ++ N + P++ G GP+ D G K Sbjct: 32 IKFSVFTPEDIRRMSTVQI-----YNQHYYTPDKRGF----PHGPL-DPRLGTGTKKD-- 79 Query: 80 HRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVL 139 ICE CG+ V G+++L P HI F+ S + +L +D RVL Sbjct: 80 ----ICETCGLGVADCI---GHYGYVKLELPVFHIGFI----SNVVEVLQRICKDCSRVL 128 Query: 140 YFESYV-------------------------------------VIEGGMTNLERQQILTE 162 +S + + G +T L +I+ E Sbjct: 129 LSDSEIQSFRNKFKRPMDNQQKKALYKKVGELCKKCSQCPHCGSLNGKVTKLNAIKIVHE 188 Query: 163 EQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIK 222 + + + + D+ D + E ++ L E E E + + + +L K I Sbjct: 189 KYKVASTRKGKDDID-QQSREFQSEFGLAVQLNPEIEPFLGEAQDDINPIRCLRLFKNIS 247 Query: 223 LLEAFVQSGN----KPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNR 278 + V + N +PE ILT + V P +RP V DGG DL +++I N Sbjct: 248 DTDVEVLNMNPKVVRPENFILTHILVPPLVIRPTVNTDGGT-NEDDLTAQMKKIIETNII 306 Query: 279 LKRLLDLAAPDIIVRN--EK-RMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQ 335 L+ ++ A IV+N EK LQ +++ R + K+ K+L +KGK Sbjct: 307 LRESVEQGA---IVQNFMEKWDTLQLETALYINSDTRNIPSFVTKKKVSKTLCQRLKGKH 363 Query: 336 GRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELR------- 388 GRFR NL GKR +++GR+VI+ P L ++Q +P+ +A L P + + + Sbjct: 364 GRFRGNLSGKRANFTGRTVISPDPNLEINQVAIPELVAKVLTYPEVVNRTNKKLLQSLIL 423 Query: 389 ----------------GLATTIKAAKKMVEREEAVVW-DILD-EVIREHPVLLNRAPTLH 430 G+ + AK +E + + + DI++ V+ L NR P+LH Sbjct: 424 NGPEVHPGANFVIKSDGIRKNLAFAKDKMEVAKNLKFGDIVERHVMNGDYALFNRQPSLH 483 Query: 431 RLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNI 490 RL I ++ + + + CA YNADFDGD+M VH+P T EA+ EA LM N+ Sbjct: 484 RLSIMCHRVKVLPYRTFRFNVCDCAPYNADFDGDEMNVHIPQTEEAKAEAGMLMDILKNL 543 Query: 491 LSPANGEPIIVPSQDVVLGLYYMTRD---------CVNAKGEGMV-----LTGP---KEA 533 ++P NG+P+I +QD + + MTR C+ G+ L P K Sbjct: 544 ITPKNGDPVISCNQDFLTAAWKMTRKNTFFDRAEFCMLCSYMGIEDKKIDLPPPTILKPI 603 Query: 534 ERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKG--LPYSI 591 E L SL + N E AK LKD T+ ++ + ++ Sbjct: 604 ELWTGKQLFSLLVKPNNNTN---VFVNFETKAKNYLKDETMCPNDGYVCFRNSYLICGNL 660 Query: 592 VNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMV----IP 647 + LG + S + R +G ++ + G S+GIDD++ + Sbjct: 661 DKKILGDGSKSSLFYVLIRTVGPAYAAACMARVARVASRWLMNYGFSIGIDDVMPSAQLT 720 Query: 648 EKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVI 707 EKK I+SE A E + ++ G + N + A N +S+ + Sbjct: 721 EKKKMILSEGYAVCDEYIKLYKDGKLEPQPGCNMEQTLEAKLNRELSE----------IR 770 Query: 708 NRDGQE--EKQVSFNSIYMMADSGARGSAAQIRQL---------AGMRGLMAKPDGSIIE 756 R G ++ N+ M+ G++GS I Q+ G R + ++ Sbjct: 771 GRAGSMCLDELHWLNAPLTMSVCGSKGSVINISQMIACVGQQTVGGTRIANGFMNRTLPH 830 Query: 757 TPITA-----------NFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQ 805 P+ A +F GL ++F T G R+G+ DTA+KTA +GY+ RRL+ + Sbjct: 831 FPMFARDPAAKGFVSNSFFTGLTPTEFFFHTMGGREGIVDTAVKTAETGYMQRRLMKALE 890 Query: 806 DLVVTED 812 DL V D Sbjct: 891 DLFVAYD 897 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/51 (50%), Positives = 30/51 (58%), Gaps = 5/51 (9%) Query: 892 FGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAAS 942 F C Y R LA GE +G IA QSIGEP TQ+T++TFH G AS Sbjct: 1034 FRACRSKYFRALAE-----PGEPVGGIAGQSIGEPTTQMTLKTFHFAGVAS 1079 Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 2/64 (3%) Query: 1301 TYSRDLLGITKASLAT--ESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIP 1358 T+ D+ GI + + +S + ASF++TT L EAA + D++ G+ E +I+G IP Sbjct: 1331 TFKGDIFGIQRHGIIKIRDSVLKMASFEQTTDHLFEAASHTRVDDVNGVSECIIMGVPIP 1390 Query: 1359 AGTG 1362 GTG Sbjct: 1391 IGTG 1394 >UniRef50_B9S1B4 DNA-directed RNA polymerase n=1 Tax=Ricinus communis RepID=B9S1B4_RICCO Length = 349 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 86/148 (58%), Positives = 110/148 (74%), Gaps = 6/148 (4%) Query: 342 LLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMV 401 +LGKRVDYSGRSVI VGP + LH+CGLP+++A+ELF+ F+ L + LA+ I AK + Sbjct: 1 MLGKRVDYSGRSVIIVGPSISLHRCGLPREIAIELFQIFVICGLIRQHLASNIGVAKSKI 60 Query: 402 EREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADF 461 +E +VW+IL EV++ HPVLLNRA TLHRLGIQAF+P+L+EG+AI LHPLV +NADF Sbjct: 61 REKEPIVWEILQEVMQGHPVLLNRALTLHRLGIQAFQPILVEGRAICLHPLVYKGFNADF 120 Query: 462 DGDQMAVH------VPLTLEAQLEARAL 483 GDQM VH PL L QL+ RA+ Sbjct: 121 GGDQMVVHKRINLDSPLWLRWQLDQRAI 148 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 78/152 (51%), Gaps = 12/152 (7%) Query: 593 NQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHE 652 N+ + + AI ++++ G+ T DQ+ GF A S+GIDD++ K Sbjct: 210 NKVIDRTAIKRLISRLIDNFGMAYTSHILDQVKTLGFQQATAISISLGIDDLLTIPSKGW 269 Query: 653 IISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQ 712 ++ +AE + +++ + G V A E+ + I+IW A ++ L+ E +N Sbjct: 270 LVQDAEQQSLILEKHYHYGNVHAVEKLRQSIEIWYATSEY--------LRQEVNLNFRMT 321 Query: 713 EEKQVSFNSIYMMADSGARGSAAQIRQLAGMR 744 E FN +++M+ SGARG+ +Q+ QL GMR Sbjct: 322 E----PFNPVHIMSFSGARGNVSQVHQLVGMR 349 >UniRef50_Q9BHM4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pleistophora sp. LS RepID=Q9BHM4_9MICR Length = 897 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 189/771 (24%), Positives = 329/771 (42%), Gaps = 112/771 (14%) Query: 103 GHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTE 162 GHIEL P HI ++ RI +L E V ++ S I+ G +N Sbjct: 1 GHIELCKPVFHIGYI----GRIKKIL-------ESVCFYCSR--IKNGDSNTRSLNSAWS 47 Query: 163 EQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELN-ETNSETKRKKLTKRI 221 + +L D+ G++ + M++ ++ R L+ E +E + Sbjct: 48 KNKSKSL------CDSGCGSKQPHFKREGMNIFTTIDENRVVLSGEKVAEIFARITDGDC 101 Query: 222 KLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKR 281 K L F P ++++ + V+PP RP + L+G A DL +I N L++ Sbjct: 102 KAL-GFDSVNAHPSSLLISSVLVVPPACRPSISLEGFLRAEDDLTHKLSDIIKSNKTLRK 160 Query: 282 LLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGR--AITGSNKRPLKSLADMIKGKQGRFR 339 AP ++R +++LQ V+ +D G+ A+ S RP+KS++ IKGK+GR R Sbjct: 161 NEAEGAPAHVIREYEQLLQFHVNTYMDTEIAGQPQALQKSG-RPIKSISSRIKGKEGRIR 219 Query: 340 QNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMA-LELFKPFIY-------------GKL 385 NL+GKRVD+S RSVIT P + L + G+P+++A +E F + G Sbjct: 220 GNLMGKRVDFSARSVITAEPNIDLDELGVPREIAVIETFPEKVNSYNIIRLSELVKRGPA 279 Query: 386 ELRGLATTIKAAKKMVER------EEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEP 439 + G I+ ++ E + W + ++ VL NR P+LH++ + Sbjct: 280 QYPGANYVIRGDGMKIDLRFTRSVELQIGWTVERHMVDGDYVLFNRQPSLHKMSMMCHRV 339 Query: 440 VLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPI 499 ++EGK+ +L+ V YNADFDGD+M +H+P + +E R L +ILSP + +PI Sbjct: 340 RVMEGKSFRLNLSVTTPYNADFDGDEMNLHMPQSYITAVELRRLTHVPLHILSPQSNKPI 399 Query: 500 IVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDA 559 + QD ++G+Y M+ G+ + + +Y + ++ I E+ Sbjct: 400 MGIVQDTLVGVYIMS-------GDSIFIEESTTHNLMY---TVDIDSKCTPAILRPERIY 449 Query: 560 NGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVI 619 G+ + L T + IV L +V++ + + +++ Y G K + Sbjct: 450 TGKQLFSMVLPPTLIYCTDNIKIVDGVLIKGVVSKKVVGSVRNSLIHILYLDYGAKVALS 509 Query: 620 FADQIMYTGFAYAARSGASVGIDD--------MVIPEKKHEIISEAEAEVAEIQE---QF 668 F + I A+ + G S GI D M I E+ + + + E ++ + Sbjct: 510 FFNNIQRVVTAFLSSYGFSCGIGDTIADFDTSMKINEELKDAVDSVNGLLLEGRDRKLRR 569 Query: 669 QSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADS 728 + GL + V+ I A D +L ++ N++ M + Sbjct: 570 RPGLSLRETFESSVMQILNKARDTSGTVAQKSLSSD---------------NNLRTMVLA 614 Query: 729 GARGSAAQIRQLAGMRG---------------------------LMAKPDGSIIETPITA 761 G++GS I Q+ G L + G ++ + Sbjct: 615 GSKGSFINISQVTACVGQQTVEGRRIACGYYYHKRTLPHFSRDDLSPRARGFVVNS---- 670 Query: 762 NFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTED 812 + GLN +++ G R+GL DTA KTA +GY+ RRL+ ++L V D Sbjct: 671 -YLSGLNPDEFYFHAMGGREGLIDTACKTAETGYMQRRLIKAMENLRVEYD 720 >UniRef50_Q7YN59 RNA polymerase C2 n=1 Tax=Eimeria tenella RepID=Q7YN59_EIMTE Length = 1050 Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 86/253 (33%), Positives = 147/253 (58%), Gaps = 11/253 (4%) Query: 720 NSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA 779 N++++MA++GA+ + QI QL G+RG +A G + P+ ++F +GLN +YFIS +G Sbjct: 112 NALHIMANTGAKANWNQICQLIGVRGYLANATGEFFKIPVLSSFNKGLNFFEYFISCYGG 171 Query: 780 RKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIE-GGDVKEPLRDR 838 RKG+ DTALKTA++GYLTRRLV+ Q+L + E +CG++ P I G++ P Sbjct: 172 RKGILDTALKTADAGYLTRRLVESIQELNIKEYNCGSNNSFEYFPQINIKGNLILPFFLL 231 Query: 839 VLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDA---VKVRSVVSCDTDFGVC 895 + G++ ++++ T I+ ++ + ++L N + + S+ +C +C Sbjct: 232 LYGKILQKNLIDFNTKKIIEFKHNYISNNLINILYYNKFNFLFKINTFSIKTCIAGRTIC 291 Query: 896 AHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNK 955 + C+G + + N G+ +G+++ Q IGEPGTQLT+RTFH GG + ++KNK Sbjct: 292 SICFGSTTFKHN--NLGKNVGILSGQVIGEPGTQLTLRTFHTGGTFTLNLN----KIKNK 345 Query: 956 GSIKLSNVKSVVN 968 + + N K N Sbjct: 346 DNF-IFNYKYFFN 357 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 67/277 (24%), Positives = 111/277 (40%), Gaps = 48/277 (17%) Query: 1127 ESGGTKDITGGLPRVADLFEARR-------PKEPAILAEISGIVS------------FGK 1167 + KDIT GL + +FEA+ P++ IL I + + Sbjct: 781 SNNSIKDITSGLILIEIIFEAKILPNIYFIPQKLNILTNIFLLYEENTLNYLWNYSLYTF 840 Query: 1168 ETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGER--VERGDVISDGPEAPHDILRLRG 1225 K+ L T ++ Y ++E + + ++I G + + +L Sbjct: 841 SYNKKKLLFFTEINSYSNY-----------IYENKTSILTPNNIIIPGNYSINILLLKLF 889 Query: 1226 VHAVTRY----------------IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNA 1269 H + Y IV + Y G+ I E+I ++M I + Sbjct: 890 SHNLNFYMQDQAIKLSHIFIFNLIVESLLKQYFKNGINIPSIQFELIAKKMTSFVKINYS 949 Query: 1270 GSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETT 1329 G S LE + +++++KI N L G YS +LGITK+ LA F ++ SFQE Sbjct: 950 GDSALLENDIFDFNKLKILNYILYTLGYKQILYSPVVLGITKSVLACSGFFASISFQEII 1009 Query: 1330 RVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYH 1366 + L + ++ D L LK N+I LI G+G+ H Sbjct: 1010 KFLKKLSIEHSIDWLSDLKSNIITTNLIKTGSGWHRH 1046 >UniRef50_Q8SSC4 DNA-directed RNA polymerase II subunit RPB1 n=17 Tax=Eukaryota RepID=RPB1_ENCCU Length = 1599 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 157/552 (28%), Positives = 255/552 (46%), Gaps = 80/552 (14%) Query: 15 EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74 ++ +I+ L SPD +R+ S + PE + P+ GL R+ G Sbjct: 8 KQIKSIQFGLFSPDEVRNGSVALIVHPEVMEGGV--PKTGGLIDLRM-----------GT 54 Query: 75 YKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRD 134 R+ +C+ CG + GHIEL P H+ ++ S+I +L Sbjct: 55 TDRM----YLCQSCGGDNFSCP---GHFGHIELTKPMFHVGYI----SKIKKVL------ 97 Query: 135 IERVLYFESYVVI-----EGGMTN---LERQQILTEEQYLDALEEFGDEFDAKMGAEAIQ 186 E V ++ S + I + ++N + + + + E + LD + + G Q Sbjct: 98 -ECVCFYCSKIKIPRKGIKSTLSNVWGMSKGRSVCEGEVLD---------NGRSGCGNKQ 147 Query: 187 ALLKSMDLE-------QECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMIL 239 ++K L +E + + LN + KK++ + F ++PEWMIL Sbjct: 148 PVIKREGLTLVAFMKGEESNEGKVMLNGERVYSIFKKISDEDSVYMGFDLKYSRPEWMIL 207 Query: 240 TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRML 299 TVL V PP +RP + ++G DL +I N LK+ AP IVR+ +++L Sbjct: 208 TVLLVPPPAVRPSIVMEGSLRGEDDLTHKLADIIKSNGYLKKYEQEGAPGHIVRDYEQLL 267 Query: 300 QEAVDALLDNGRRG--RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITV 357 Q V +DN G +A+ S RPLKSL+ +KGK+GR R NL+GKRVD+S R+VIT Sbjct: 268 QFHVATFIDNDIGGLPQALQKSG-RPLKSLSARLKGKEGRIRGNLMGKRVDFSARTVITP 326 Query: 358 GPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKA------AKKMVEREEAVVWDI 411 P + L + G+P ++A P + L ++A V R + D+ Sbjct: 327 DPNISLEEVGVPLEIAKIHTFPEKVTSFNIDRLEKLVRAGPNEHPGANYVLRSDGQKIDL 386 Query: 412 --------LDE--VIREH-----PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAA 456 L+E V+ H VL NR P+LH++ + A ++ K +L+ V + Sbjct: 387 NFNRSDIRLEEGYVVERHMQSGDVVLFNRQPSLHKMSMMAHYARVMGNKTFRLNLSVTSP 446 Query: 457 YNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-R 515 YNADFDGD+M +H+P + ++ E L + + I+SP + +P++ QD + GL T R Sbjct: 447 YNADFDGDEMNLHMPQSYTSKAELEELALVSRQIISPQSNKPVMGIVQDTLTGLRLFTLR 506 Query: 516 DCVNAKGEGMVL 527 D + E M L Sbjct: 507 DTFLNEREVMSL 518 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 36/55 (65%) Query: 759 ITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDD 813 + ++ GL+ ++F G R+GL DTA+KTA +GY+ RRLV +D +V +D+ Sbjct: 794 VENSYLTGLDPEEFFFHAMGGREGLIDTAIKTAETGYIQRRLVKALEDAIVRQDE 848 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 25/34 (73%) Query: 909 INKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAAS 942 I E +G +AAQS+GEP TQ+T+ TFH+ G AS Sbjct: 1043 ITPNEMVGTLAAQSVGEPATQMTLNTFHLAGVAS 1076 Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 15/112 (13%) Query: 1253 IEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKA 1312 IE +LR+ TIV G+ G V Y + + + G L GIT+ Sbjct: 1304 IEAARESILRELTIVIDGN-----GSYVNYRHMSLLADVMTMRGY--------LCGITRH 1350 Query: 1313 SL--ATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362 + + +SF+ET +L +AA+ +++ RG+ EN+++G+L P GTG Sbjct: 1351 GVNKVGAGALKRSSFEETVEILLDAALVSEKNICRGITENIMMGQLAPMGTG 1402 >UniRef50_Q3LWE3 DNA-directed RNA polymerase n=1 Tax=Bigelowiella natans RepID=Q3LWE3_BIGNA Length = 1510 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 194/829 (23%), Positives = 349/829 (42%), Gaps = 143/829 (17%) Query: 102 MGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILT 161 GHIEL P + +L GL+L + ++ V Y+ S ++IE TN++ L Sbjct: 80 FGHIELFLPVFNCNYL-------GLILKI----LKSVNYYTSALLIEKTRTNIQE---LL 125 Query: 162 EEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLR-------------EELNET 208 + D + E A+ ++ L S D E E L+ + Sbjct: 126 KHNISDRISIISKE------ADRVKTDLLSGDFLPEYESLKGIQIWMRFPLCVKQGKFNP 179 Query: 209 NSETKRK-------KLTKRIKLLEA----FVQSGNKPEWMILTVLPVLPPDLRPLVPLDG 257 N KRK + K I + F ++P W+IL LP+ P ++RP + Sbjct: 180 NILVKRKLFPEQAYSILKNISKFDCNILGFDFKNSRPNWLILYNLPIPPINIRPYSKKNL 239 Query: 258 GRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGR-RGRAI 316 DL +I N+RL+R + ++ N + +L + DN + + Sbjct: 240 FIKYEDDLTYKLHDIIKANDRLQRSKNSRKSSELLENYRELLSYHIFTYFDNSSTKVKLS 299 Query: 317 TGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALEL 376 T + +P+KS++ +KGK GRFR+NL+GKRVD++GR+VIT Y+ L + G+P +A +L Sbjct: 300 THVSGKPIKSISQRLKGKFGRFRRNLVGKRVDFTGRTVITGDSYIHLEELGIPMLIAKKL 359 Query: 377 FKPFIYGKLELRGLA-------------TTIKAAKKMVE----REEAVVWDILDEVIREH 419 P + K + L+ IK K+++ +++ +I H Sbjct: 360 TLPEVVNKFNIDRLSYIIDSTGNELKANYIIKGYNKVIDLRYKSSNSIILLKYGFIIERH 419 Query: 420 -----PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTL 474 V+LNR P+LH++ + + +L+ V YNADFDGD+M +H+P + Sbjct: 420 IQSGDIVILNRQPSLHKMSMMGHRVKIFPKLTFRLNLSVTTPYNADFDGDEMNIHIPQSE 479 Query: 475 EAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLY---------------YMTRDCVN 519 + E+ +M NNI+SP +P+I QD + Y Y+ + N Sbjct: 480 LTRSESTFIMNVINNIMSPQANKPVIGLVQDTLSTCYTLSSRDSFLNSLEKDYLKNNYKN 539 Query: 520 AKGEGMVLTGPKE--AERLYRSGLASL-HARVKVRITEYEKDANGELVAKTSLKDTTVGR 576 + ++ K+ ++L S L L + R T + +D+N + ++D G+ Sbjct: 540 FSTQPSIIKPLKKWTGKQLLSSFLPHLTFLHRESRKTFHFEDSNNYNDSSMYIQD---GK 596 Query: 577 AILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVI----FADQIMYTGFAYA 632 ++ GL KK I N+ + + L+ F D T Sbjct: 597 IMM------GL--------FNKKTIGASYNSIIQNIWLEYDHFSCRNFIDLCQTTARHTN 642 Query: 633 ARSGASVGIDDMVIPEKKHEIISEAEA-------EVAEIQEQFQSGLVTAGERYNKVIDI 685 ++G +V + D+ + +K I + ++ E ++Q + + ++N + I Sbjct: 643 IKNGFTVSLWDVFLEKKLFNIFYNIKKFYIHNWIKLMETKKQIKMTQI-KNFKFNTITKI 701 Query: 686 WAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRG 745 + + + + NL N++ N++ +M +SG++GS + Q+ G+ G Sbjct: 702 NNLSTTKKYFSSLINLFLNLTHNQN---------NNMNIMLNSGSKGSLINLIQIVGLLG 752 Query: 746 L--------MAKPDGSI----------IETP--ITANFREGLNVLQYFISTHGARKGLAD 785 M G + IE+ I +NF GLN +YF R+G+ D Sbjct: 753 KQSSIKINNMNHFHGRLFCHNIIGHIPIESTGFILSNFFYGLNPHEYFCHAISGREGIID 812 Query: 786 TALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEP 834 T++KTA +GY+ R+ ++L+ D + + + G D +P Sbjct: 813 TSIKTAETGYIQRKFSKSMENLICYYDGTVRNSSQSIIQFLYGEDGLDP 861 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 24/32 (75%) Query: 912 GEAIGVIAAQSIGEPGTQLTMRTFHIGGAASR 943 GE +GVI AQSIGEP TQ+T+ TFH G A + Sbjct: 1044 GECVGVIGAQSIGEPTTQMTLNTFHYAGIAEK 1075 >UniRef50_Q4A369 DNA-directed RNA polymerase n=2 Tax=dsDNA viruses, no RNA stage RepID=Q4A369_EHV86 Length = 1468 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 212/823 (25%), Positives = 337/823 (40%), Gaps = 215/823 (26%) Query: 279 LKRLLDLAA--PDIIVRNEKRMLQEAVDALLD----NGRRGRAITGSNKRPL--KSLADM 330 + RLL++ A PD+I R + LQ V L++ G ++ +N+ K + D Sbjct: 293 VDRLLNVDALTPDLIDRWNR--LQADVFGLVNPAAIRGGMPASMANNNRNSANGKYIIDR 350 Query: 331 IKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKP----------- 379 I+GK GRFR L+GKRV++SGRSVIT + + Q G+P ++A+ L P Sbjct: 351 IRGKNGRFRNCLMGKRVNFSGRSVITPDSTIDVDQLGVPYELAMILTVPEKVTPSNIADL 410 Query: 380 ---FIYGKLELRGLATTIK------AAKKMVEREEAVV---WDILDEVIREHPVLLNRAP 427 + G EL G + I + K R + V+ W + + V+ NR P Sbjct: 411 RTRILNGPTELIGAQSVINTEGDLISLKSCKNRADIVLRIGWIVERHLKNGDWVIFNRQP 470 Query: 428 TLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMST 487 TLHR+G VL +GK +L+ VCA YNADFDGD+M +HV + A E LM Sbjct: 471 TLHRMGFNGHRVVLTKGKTFRLNLSVCAVYNADFDGDEMNIHVCQSACATSEVSTLMAIN 530 Query: 488 NNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHAR 547 NI+S N +P QD ++G + MT V L R+ + L R Sbjct: 531 RNIISAQNNKPCFGIVQDSLVGAWLMTDPSV----------------FLTRADM--LRFR 572 Query: 548 VKVRITEYEKDANGELV----AKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISK 603 + V+ NG + A + K+ G ++ + P L Y + +IS Sbjct: 573 IYVKFAN-----NGTTMLPPPAISKPKELWTGSQLISFVFPYTLMYQ-------RGSISG 620 Query: 604 MLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVI-----PEKKHEIISEAE 658 + T Y K +I QI++ + + + I D++ P+K E +S+ + Sbjct: 621 I--TSY---DTKDLLIQNGQILFGRLSKSTLGATAGAISDIIHHEHGGPKKAVEFLSDVQ 675 Query: 659 AEVAE---IQEQFQSG---LVTAGERYNKVID-IWAAAND-------RVSKAMMDN---- 700 V + + F G VT + +N+V++ I +A N+ +V K++ + Sbjct: 676 RVVNQWLLYKNSFSIGASDCVTNEQSHNEVVECIKSAVNNSKMILTSKVPKSLKEMAEGA 735 Query: 701 ---------LQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRG------ 745 ++T T+I + + NSI +G++GS I Q+ G G Sbjct: 736 TTRILSDVIMKTATIIKNNAPPD-----NSIITCVTAGSKGSPLNIAQVCGQVGQQIVGG 790 Query: 746 --LMAKPDGSII-------ETPITAN------FREGLNVLQYFISTHGARKGLADTALKT 790 ++ G + + AN F GL ++F S R+GL DTA+KT Sbjct: 791 ARILNGTSGRTLPCFKHGEHATVNANGYIQNSFMLGLQPTEFFFSAMSGREGLVDTAVKT 850 Query: 791 ANSGYLTRRLVDVAQD--------------LVV------TEDDCGTH----EGIMMTP-- 824 ANSGY+ R LV ++D +VV D C E ++MTP Sbjct: 851 ANSGYIQRCLVKASEDNMCNYDGTIRNAQGMVVQFKYADNFDPCKVERIKVEPLLMTPEE 910 Query: 825 -----------VIEG---------GDVKEPLRDRVLGRVTAEDVLKPGTADILVPR---- 860 VI +PL D VL + + + T + VP Sbjct: 911 IKRNAGPLEYDVIMSLRENAQKVLSQSNKPLMDVVLLPINISRMFESATWNNDVPHEFDE 970 Query: 861 -------NTLLHE----------------QWCDLLEENSVDAVKVRSVVSCDTDFGVCAH 897 + ++HE QWC + N + + V++ + Sbjct: 971 ESLLTAVSEVVHEIVKKHPVCKYVVPLYIQWC-MRIGNIPEHLNVKAFL----------- 1018 Query: 898 CYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGA 940 C + ++ G+A+G AA SIGEP TQ+T+ +FH G Sbjct: 1019 CEVKHRCLSSVVAGGDAVGNTAALSIGEPSTQMTLNSFHTAGT 1061 >UniRef50_A7AP17 DNA-directed RNA polymerase n=1 Tax=Babesia bovis RepID=A7AP17_BABBO Length = 1541 Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 205/843 (24%), Positives = 343/843 (40%), Gaps = 157/843 (18%) Query: 82 GVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLK-------SLPSRIGLLLDMPLRD 134 G +C CG ++ Q GHI+L P HI F K + R LL +P Sbjct: 142 GSLCHTCGKDLKQCV---GHWGHIQLQMPVFHIGFFKYTIQILYCICKRCAFLL-LPENT 197 Query: 135 IERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKS--- 191 ++R L + + + L +QI+ E + + +A+ G I+ ++K Sbjct: 198 VKRFLEAHRRRMDDPLLRPLLFKQIMQECRKITKCPRC----EARQGV--IRRIVKPVMD 251 Query: 192 --MDLEQ--------ECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTV 241 M L + + E+LN K+L + I A + + PE +++ Sbjct: 252 QFMKLRHVIKYKEGGKLHSIEEDLNPLVV----KQLFESIDPTHAKILNVVSPEKLLINN 307 Query: 242 LPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAA--PDIIVRNEKRML 299 L V P +RP V ++G DL ++ ++ NN K + + I+ + L Sbjct: 308 LAVPPSCIRPSVTIEGQGTTEDDLTCIFSDIVELNNGWKNQIRNGSQISQFILSWQCLQL 367 Query: 300 Q---------EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYS 350 Q AV LL ++ + +P + + +KGK+GRFR NL GKRVD+S Sbjct: 368 QCTRLINAEAPAVSQLL--------VSRNISKPGRGVCQRLKGKEGRFRGNLSGKRVDFS 419 Query: 351 GRSVITVGPYLRLHQCGLPKKMALELFKP--------FIYGKLELRGLA----------- 391 R+VI+ P + + + +P+ +A++L P I K L G++ Sbjct: 420 ARTVISPDPNVGVDEVVVPEWIAMKLTFPEEVTDSNISIMKKAVLNGVSIWPGATYVKKQ 479 Query: 392 ----TTIKAAKKMVEREEAVVWDI-LDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKA 446 +++ A + V D+ L + VL NR P+LHR+ I A ++ G Sbjct: 480 NGGKCSLQYANPKYMSDNLTVGDVVLRHLWNGDVVLFNRQPSLHRMSIMAHRVRVMPGST 539 Query: 447 IQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDV 506 + + VC YNADFDGD+M +H+P T EA+ EA LM +N+ +P NGEP+I QD Sbjct: 540 FRFNECVCQPYNADFDGDEMNLHLPQTYEAKAEALHLMSVLHNLTTPRNGEPLIAAVQDF 599 Query: 507 VLGLYYMT------------RDCVNAKGEG--------------MVLTGPKEAERLYRSG 540 + Y +T + C + M+ TG + L R Sbjct: 600 LCASYLLTSKDRFLTRAEFCQACCHFTDAASQVDLPPPAIIYPVMLWTGKQVFNALLR-- 657 Query: 541 LASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKA 600 + +V V E++ V K + G I +V+ ALGKKA Sbjct: 658 -PNRRCKVVVNFECKEREFQDPPVGKNACMCPKDGYVIFH-------NSELVSGALGKKA 709 Query: 601 ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAAR----SGASVGIDDM----VIPEKKHE 652 + + + L + A + M +R G ++G+DD+ + K E Sbjct: 710 LGASKDGLFYQLLTRNNRYIAAECMLRVSKLTSRWLAGFGMTIGLDDVRPGPELLHHKQE 769 Query: 653 IISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTET--VINRD 710 +++E A+V F + G + +++ K ++D L+ E N + Sbjct: 770 LLNEGYAKVTAAINNFDTLQALPGCTREETLELQV-------KRVLDELRNEAGKACNSN 822 Query: 711 GQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETP------------ 758 + + N +M +SGA+G+ I Q+ + G G IE Sbjct: 823 LRAD-----NKPLIMFNSGAKGALINIAQMVALVG-QQNVSGQRIENGFIGRTLPHFDIG 876 Query: 759 ---------ITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVV 809 + +F GL ++F T R+GL DTA+KT+ +GY+ RRL+ + L V Sbjct: 877 CMDAKSRGFVANSFFSGLGPEEFFFHTMSGREGLIDTAVKTSETGYMQRRLMKALEVLAV 936 Query: 810 TED 812 D Sbjct: 937 CYD 939 Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 26/45 (57%), Positives = 31/45 (68%), Gaps = 1/45 (2%) Query: 898 CYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAAS 942 C +D R I GEAIG + AQSIGEPGTQ+T++TFH G AS Sbjct: 1185 CCWKDYQRA-ICVPGEAIGALGAQSIGEPGTQMTLKTFHFAGVAS 1228 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 3/80 (3%) Query: 1285 VKIANRELEANGKVGATYSRDLLGITKASLAT--ESFISAASFQETTRVLTEAAVAGKRD 1342 + I R ++ G V T+ +++GI + + S + ASF+ET L EAAV RD Sbjct: 1450 IDIDQRYMKLLGDV-MTFRGEVIGINRFGIQKMRASTLMLASFEETNEHLFEAAVHRLRD 1508 Query: 1343 ELRGLKENVIVGRLIPAGTG 1362 ++G+ E +I+G+ +P GTG Sbjct: 1509 PIKGVSECIIMGKQVPLGTG 1528 >UniRef50_Q9BHZ7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Loma acerinae RepID=Q9BHZ7_9MICR Length = 894 Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 168/643 (26%), Positives = 285/643 (44%), Gaps = 75/643 (11%) Query: 226 AFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDL 285 F + ++PEWMI++VL V +RP V L+G DL ++ N L++ Sbjct: 137 GFDEKYSRPEWMIISVLNVHAMSVRPSVVLEGTLRGEDDLTHKLSDIVKCNKNLEKHEKE 196 Query: 286 AAPDIIVRNEKRMLQEAVDALLDNGRRG--RAITGSNKRPLKSLADMIKGKQGRFRQNLL 343 AP I+R+ + +LQ V L+DN G +++ S RPLKS++ +KGK+GR R NL+ Sbjct: 197 GAPGHIIRDYENLLQYHVATLMDNSIPGLPQSLQKSG-RPLKSISARLKGKEGRMRGNLM 255 Query: 344 GKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIK------AA 397 GKRVD+S RSVI+ L L + G+P ++A P ++ L I Sbjct: 256 GKRVDFSARSVISPDSNLSLDEVGVPIQIAKIHTFPEKVTSFNIQKLQKLIDNGPNKYPG 315 Query: 398 KKMVEREEAVVWDILDEVIREHPVLLNRA-----------PTLHRLGIQAFEPVLIEGKA 446 V RE + + +++ R + + RA L + + A +P + G+ Sbjct: 316 ANFVTRETSEIDLRYNKISRTNNRMHRRATHDSEISYSLQTLLCIMSMMAHKPRFMPGRT 375 Query: 447 IQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDV 506 +L+ V YNADFDGD+M +H+P + + E L+ +N++S +P++ QD Sbjct: 376 FRLNLSVTTPYNADFDGDEMNLHMPQSYNTRAELEYLVKVKHNVVSCQGNKPVMGIVQDS 435 Query: 507 VLGLYYMTRDCV-----NAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANG 561 ++G+ MT D + N + P L + L + + I +K G Sbjct: 436 LVGVKIMTGDSIFFDLFNLNKLFFQIDFPDSNTLLMK-----LAYKERPAILRPKKLFTG 490 Query: 562 ELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVI-- 619 + V L + R + +V KG+ +++ ++ KK + + +L L+ I Sbjct: 491 KQVFSFLLPEINYHRGDV--LVKKGI---LLHGSIDKKIVGTSQGSLIHVLCLENYEILH 545 Query: 620 FADQIMYTGFAYAARSGASVGIDDMVIP----EKKHEIISEAEAEVAEIQEQFQSGLVTA 675 F + + A+ G S+GI+D V EK E I +A+ + + E+ + G + Sbjct: 546 FFNSLQLIVHAFLLMHGFSMGIEDAVTDTYTIEKITESIQKAKLDAFYLIEECRKGQMKK 605 Query: 676 GERYN-------KVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADS 728 N ++ I A D + D+ E R G+ FN+I MM ++ Sbjct: 606 LPGMNFRETFESRITQILNKARDTSGRYTSDSFAPEY---RKGK-----PFNNILMMVEA 657 Query: 729 GARGSAAQIRQLAGMRG------------------LMAKPDGSIIETPITAN-FREGLNV 769 G++GS I Q+ G K D N + GL Sbjct: 658 GSKGSLINISQIIACVGPQNVEGHRIGFSAQRTLPHFHKDDNRPESRGFVENSYLSGLRP 717 Query: 770 LQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTED 812 +++ G R+GL DTA+KTA +GY+ RRL+ ++ ++ D Sbjct: 718 DEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMENCKISFD 760 >UniRef50_Q5CUJ2 DNA-directed RNA polymerase (Fragment) n=6 Tax=Eukaryota RepID=Q5CUJ2_CRYPV Length = 1902 Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 164/670 (24%), Positives = 285/670 (42%), Gaps = 103/670 (15%) Query: 233 KPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIV 292 P W I TV+P+ PP +RP V R + DL +++I N LK+ + + +P+ I+ Sbjct: 232 NPSWFINTVIPIPPPAVRPYVQFGSDR-SEDDLTLKLQQIIKLNENLKKQIRIGSPEHII 290 Query: 293 RNEKRMLQEAVDALLDNGRRG--RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYS 350 +LQ + L++N G ++ T SN RP+KSL +KGK GR R NL+GKRVD+S Sbjct: 291 SEMSTVLQYHLITLINNDLPGLPQSRTRSN-RPIKSLRARLKGKDGRIRGNLMGKRVDFS 349 Query: 351 GRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIK-------AAKKMVER 403 R+VIT P L + Q G+P +A+ L P + + L ++ A +++ Sbjct: 350 ARTVITGDPNLAVDQVGVPYSIAMTLTYPEVVTPYNIEELKELVQRGPHEWPGATSIIQE 409 Query: 404 EEAVV------------------WDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGK 445 + V W + + + VL NR P+LH++ I ++ Sbjct: 410 DGTKVDLRFSNTSNNSNNILQYGWKVERHMKNDDLVLFNRQPSLHKMSIMGHRVKILPYS 469 Query: 446 AIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQD 505 +L+ V + YNADFDGD+M +H+ + E + E + LMM I+SP +P+I QD Sbjct: 470 TFRLNLSVTSPYNADFDGDEMNLHLAQSHETRSEIKNLMMVPRQIVSPQGNKPVIGIVQD 529 Query: 506 VVLGLY-------YMTRD-------CV-----NAKGEGMVLTGP----KEAERLYRSGLA 542 +LG++ ++TRD C+ N ++ P K+ + + Sbjct: 530 SLLGIFLLTRKSTFLTRDKFLQLLLCIPYWNGNIPPPAILRPQPLWTGKQIITVLLAFTT 589 Query: 543 SLHARVKVR------ITEYEKDANGELVAKTSLKDTTVGRAILWM-------IVPKGLPY 589 L +++ I ++ N K K+ V W+ I+ KG Sbjct: 590 DLGEPIELNLMRDGSIVSIKQSNNSSNTDKDDSKEAIVNNP--WISELDNQVIIQKGEHI 647 Query: 590 S-IVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDM---- 644 ++ + + + +++ + +G + T +F + G +VG D+ Sbjct: 648 CGVLTKKIAGSSSGSLIHILWNEIGPEKTGLFLTYTQMVVNTWLLEHGFTVGCQDIQPQN 707 Query: 645 VIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKA--MMDNLQ 702 EK + ++ +V +I + Q G + + + A N ++ A + + Sbjct: 708 YTLEKIMNSLEGSKLQVQQIIRRAQKGKLDCQPGKSLIESFEAQVNQELNSARELSGTIA 767 Query: 703 TETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRG----------------- 745 TE N D S N+I M G++GS I Q+ G Sbjct: 768 TE---NLDS------SKNNIVAMVQCGSKGSTINISQIMACVGQQNVEGKRIPFGFRDRS 818 Query: 746 ---LMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVD 802 + G ++ ++ GL + F G R+G+ DTA KT+ +GY+ RRL+ Sbjct: 819 LPHFLKYDYGPESRGFVSNSYLSGLTPQEVFFHAMGGREGIIDTACKTSETGYIQRRLIK 878 Query: 803 VAQDLVVTED 812 +D +V D Sbjct: 879 AMEDCMVQYD 888 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 18/133 (13%) Query: 1230 TRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIAN 1289 TR I N++ +V+ + G IE + R +LR+ V + +G V Y + + Sbjct: 1398 TRTISNDITEVFSVLG-------IEAVRRALLRELRTVIS-----FDGSYVNYRHLALLC 1445 Query: 1290 RELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKE 1349 + G + + + + K L SF+ET VL +AA+ G+ D L G+ E Sbjct: 1446 DNMTQKGHLMSITRHGINRVDKGPL------QKCSFEETVEVLMDAAMFGETDYLNGVSE 1499 Query: 1350 NVIVGRLIPAGTG 1362 NV++G+L P GT Sbjct: 1500 NVMLGQLAPYGTA 1512 Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 25/52 (48%), Positives = 30/52 (57%), Gaps = 5/52 (9%) Query: 892 FGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASR 943 G H + R LA GE +G IAAQSIGEP TQ+T+ TFH G S+ Sbjct: 1101 LGEIEHQFYRSLAHS-----GEMVGTIAAQSIGEPATQMTLNTFHFAGVGSK 1147 >UniRef50_P04050 DNA-directed RNA polymerase II subunit RPB1 n=210 Tax=Eukaryota RepID=RPB1_YEAST Length = 1733 Score = 173 bits (438), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 172/660 (26%), Positives = 284/660 (43%), Gaps = 100/660 (15%) Query: 226 AFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDL 285 F + ++PEWMILT LPV PP +RP + + + DL ++ N L+ L Sbjct: 223 GFNEVFSRPEWMILTCLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHN 282 Query: 286 AAPDIIVRNEKRMLQEAVDALLDNGRRGR--AITGSNKRPLKSLADMIKGKQGRFRQNLL 343 AP + + +LQ V +DN G+ A+ S RP+KS+ +KGK+GR R NL+ Sbjct: 283 GAPHHAIEEAESLLQFHVATYMDNDIAGQPQALQKSG-RPVKSIRARLKGKEGRIRGNLM 341 Query: 344 GKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIK------AA 397 GKRVD+S R+VI+ P L L Q G+PK +A L P + + L ++ Sbjct: 342 GKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPG 401 Query: 398 KKMVEREEA-----------------VVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPV 440 K V R+ W + ++ PVL NR P+LH++ + A Sbjct: 402 AKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVK 461 Query: 441 LIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPII 500 +I +L+ V + YNADFDGD+M +HVP + E + E L I+SP + +P + Sbjct: 462 VIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCM 521 Query: 501 VPSQDVVLGLYYMT-RDCV------------NAKGEGMVLTGPKEAERLYRSGLASLHAR 547 QD + G+ +T RD +G++ T + SG L Sbjct: 522 GIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAIIKPKPLWSGKQILSVA 581 Query: 548 VKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPK-------GLPYSIVNQALGKKA 600 + I D L++ + I++ +V K G +V + G + Sbjct: 582 IPNGIHLQRFDEGTTLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQV 641 Query: 601 ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAE 660 +K+ +++ +++ GF+ +G I D + E I+EA+ + Sbjct: 642 CAKLFGNIQKVVNF--------WLLHNGFS----TGIGDTIADGPTMREITETIAEAKKK 689 Query: 661 VAEIQEQFQSGLVTAG------ERY-NKVIDIWAAANDRVSKAMMDNLQTETVINRDGQE 713 V ++ ++ Q+ L+TA E + + V+ A D+ + NL+ Sbjct: 690 VLDVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDKAGRLAEVNLK----------- 738 Query: 714 EKQVSFNSIYMMADSGARGSAAQIRQLAGMRGL-------------------MAKPDGSI 754 N++ M +G++GS I Q++ G +K D S Sbjct: 739 ----DLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSP 794 Query: 755 IETPITAN-FREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDD 813 N + GL ++F G R+GL DTA+KTA +GY+ RRLV +D++V D+ Sbjct: 795 ESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDN 854 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 21/36 (58%), Positives = 29/36 (80%) Query: 908 IINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASR 943 +++ GE +GV+AAQSIGEP TQ+T+ TFH G AS+ Sbjct: 1057 VVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASK 1092 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 38/144 (26%) Query: 1219 DILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGE 1278 DI+ + G+ A + EV +V G +N +H+ ++V M + + + F Sbjct: 1334 DIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGF---- 1389 Query: 1279 QVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVA 1338 NR GA + SF+ET +L EA + Sbjct: 1390 ----------NR-----SNTGA-------------------LMRCSFEETVEILFEAGAS 1415 Query: 1339 GKRDELRGLKENVIVGRLIPAGTG 1362 + D+ RG+ ENVI+G++ P GTG Sbjct: 1416 AELDDCRGVSENVILGQMAPIGTG 1439 >UniRef50_Q9AVW8 DNA-directed RNA polymerase n=2 Tax=Cryptophyta RepID=Q9AVW8_GUITH Length = 1473 Score = 172 bits (437), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 168/645 (26%), Positives = 289/645 (44%), Gaps = 82/645 (12%) Query: 233 KPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIV 292 +P+WMI+TVLPV PP +RP V + A DL +I N L++ + P ++ Sbjct: 215 RPDWMIITVLPVPPPTIRPSVKFETLLRAEDDLTYKLGDIIRTNKILRKAIFSCLPSQLI 274 Query: 293 RNEKRMLQEAVDALLDNGRRGRAIT-GSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSG 351 + +LQ + + ++N A + + RP+KS+ ++GK+GR R NL+GKRVD+S Sbjct: 275 NEQINLLQYHIGSYMNNSVPSLAKSLQKSGRPIKSIKQRLQGKEGRLRGNLMGKRVDFSA 334 Query: 352 RSVITVGPYLRLHQCGLPKKMALELFKPFI-------YGKLELRGLATTIKAAKKMVERE 404 R+VIT P ++L + G+P +A+ L P I Y K L AK ++ + Sbjct: 335 RTVITPDPNIKLDELGVPLSIAMNLTFPEIVTSFNIEYMKFLLYNGPYKHPGAKYLIRND 394 Query: 405 EAVV----WDILDEVIREH------------PVLLNRAPTLHRLGIQAFEPVLIEGKAIQ 448 + L + E+ VL NR P+LH++ + +++ + Sbjct: 395 NNRIDLRYVKYLSNINLENGYCVERHLQNGDLVLFNRQPSLHKMSMMGHIVKVMKFSTFR 454 Query: 449 LHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVL 508 L+ + YNADFDGD+M +H P +E++ E + L+M +N I+SP +PI+ QD +L Sbjct: 455 LNLSATSPYNADFDGDEMNLHFPQNVESKSELKNLLMVSNCIVSPQGNKPIMGIVQDSLL 514 Query: 509 GLYYMT-RDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKT 567 G +T + +K E M E L L A K RI K ++ Sbjct: 515 GSMLITEKGNFLSKYEIMAYLNLIEGYSLN----IPLPAIYKPRILWTGKQLISTIIPCI 570 Query: 568 SLKDTTVG-----RAILW-----MIVPKGLPYSIVNQALGKKAISK----MLNTCYRILG 613 +L T + +A + +I+ +G +++ + K+ I +++ ++ +G Sbjct: 571 NLSRTCISHPEHEKAYVTSGDTRVIIFQG---QLLSGMIDKRTIGATSGGLIHVIWKDIG 627 Query: 614 LKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHE-----IISEAEAEVAEIQEQF 668 F + +G SVGI D IP K + II A+ V + ++ Sbjct: 628 PSACSYFISNFQIIVNNWLQLNGFSVGIGD-CIPTKMVKKDVSLIIKTAKLFVKKSIKRL 686 Query: 669 QSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADS 728 S +++N + +N + + L + ++ S+N++ M S Sbjct: 687 LS------KKFNGFFN--KDSNYNLENHLNKVLNNARDMAGSSAQKCLTSYNNLKKMIFS 738 Query: 729 GARGSAAQIRQLAGMRGLMAKPDGSII-------------------ETP--ITANFREGL 767 G++GS I Q+ G +G I ET + ++ EGL Sbjct: 739 GSKGSLINISQIVACVG-QQNVEGKRIPFGFRKRSLPHYHYKNFEPETRGFVVNSYIEGL 797 Query: 768 NVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTED 812 ++F + G R+GL DTA+KT+ +GY+ RRL +D+VV D Sbjct: 798 FPDEFFFHSMGGREGLIDTAIKTSETGYIQRRLSKSMEDIVVEYD 842 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 9/79 (11%) Query: 874 ENSVDAVKVRSVVSCD---TDFGVCAHCYGRDL------ARGHIINKGEAIGVIAAQSIG 924 +N + A+ +RS +S T F + H + R +I GE +G I+AQSIG Sbjct: 1008 DNFLLAIYIRSSLSLKIIYTKFNLNQHALNWIVNEICLSIRKSLIQPGEMVGTISAQSIG 1067 Query: 925 EPGTQLTMRTFHIGGAASR 943 +P TQ+T+ TFH G +++ Sbjct: 1068 QPATQMTLNTFHFAGVSAK 1086 >UniRef50_Q2WGI5 RNA polymerase beta'' chain (Fragment) n=1 Tax=Selaginella uncinata RepID=Q2WGI5_SELUN Length = 1467 Score = 172 bits (436), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 111/348 (31%), Positives = 174/348 (50%), Gaps = 15/348 (4%) Query: 593 NQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHE 652 N+ + K A+ + ++ G T DQ+ GF A + AS GIDD++ K Sbjct: 11 NRVMDKIAMKQSISGLTIHSGTVYTAHIPDQLKTLGFQQATHAAASSGIDDLITTPSKER 70 Query: 653 IISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQ 712 ++ +AE++ ++ G ER + I++ ++ M NL T +N Sbjct: 71 LVQDAESQDWFEEQHHCYGNAHVAERSRRSIEVRYTMSEHTKTEMNPNLGTTDPLN---- 126 Query: 713 EEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQY 772 ++M GARG+ +Q QL GMRG M+ P G + P +N REG + +Y Sbjct: 127 --------PAHVMPLPGARGNISQTHQLLGMRGSMSNPKGQTTDLPTRSNPREGSSSAEY 178 Query: 773 FISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVK 832 +GARKG+ADTA++TA++GY TRR V+V Q +V D GT G+ ++PV++ + Sbjct: 179 MTPRYGARKGIADTAVRTADAGYPTRRPVEVVQRVVARTVDRGTIRGVTVSPVLDRQSRQ 238 Query: 833 EPL-RDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTD 891 + R R +G V+A++V + R+ + D + +R + + Sbjct: 239 MIIARSRPIGCVSADNVYV--DTRRIAARDQDTGAELADQSVSFQKRPISIRPPSARKSM 296 Query: 892 FGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGG 939 F +C +GR LA G + GEA+G A Q IGEPGTQ T+RTFH GG Sbjct: 297 FWICRSRHGRSLAHGDPVELGEAVGTTAGQPIGEPGTQSTLRTFHTGG 344 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 58/130 (44%), Positives = 72/130 (55%), Gaps = 5/130 (3%) Query: 1234 VNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLE-GEQVEYSRVKIANREL 1292 V+ + YR QGV+I DKH E+I RQ+ K G ++ GE E SR + Sbjct: 1275 VDRTEREYRSQGVQIADKHAEMIARQVTPKMVAPEDGMANASPPGEPTEVSRAWRMDCAP 1334 Query: 1293 EANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVI 1352 EA T LLG+T+A L T+S AS QETTRVL AA G+ D +G KEN I Sbjct: 1335 EAK----ITCRPVLLGVTRAPLNTKSLTPGASSQETTRVLAGAATRGQTDRSKGSKENAI 1390 Query: 1353 VGRLIPAGTG 1362 VGR +PAGTG Sbjct: 1391 VGRTVPAGTG 1400 >UniRef50_B6AG69 DNA-directed RNA polymerase n=1 Tax=Cryptosporidium muris RN66 RepID=B6AG69_9CRYT Length = 1927 Score = 172 bits (436), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 160/548 (29%), Positives = 244/548 (44%), Gaps = 87/548 (15%) Query: 19 AIKIALASPDMIRSWSFGEVKKPETIN--YRTFKPERDGLFCARIFGPVKDYECLCGKYK 76 +I+ + SPD+IR +S EV TI+ Y KP+ GL + G + DY Sbjct: 21 SIEFGVLSPDLIRRYSVLEV----TISDLYENGKPKSGGL-NDPLMGTI-DYH------- 67 Query: 77 RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIE 136 V+CE C +++ K HIEL P HI F+ + L+ + Sbjct: 68 ------VLCETCHMDI---KTCPGHFAHIELGKPMFHIGFVSVV-----------LKILR 107 Query: 137 RVLYFESYVVIEGGMTNLER-QQILTEEQYLDALEEFGDEFDAKM------GAEAIQALL 189 V + S + I+ + Q+ L L E + + G +Q + Sbjct: 108 CVCFACSKLFIDPMDPKFKVIQKTRNPHLRLQRLVEISKTYSRCVISSDGSGCGFVQPQI 167 Query: 190 KSMDLEQECEQLREELNETNSETKRKKLT---------KRI-----KLLEAFVQSGNKPE 235 Q E N + T +++ KRI KLL F P Sbjct: 168 SKDGYNLYIRQHEESRNMDDESTDSRRMLSAEEVLNIFKRITDEDMKLL-GFDPKRCNPC 226 Query: 236 WMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNE 295 W + T+LP+ PP +RP V R + DL ++++ N LKR + L +PD I+ Sbjct: 227 WFVTTILPIPPPAVRPYVQFGSDR-SEDDLTLKLQQIVKLNENLKRQIRLGSPDHILNEM 285 Query: 296 KRMLQEAVDALLDNGRRG--RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRS 353 +LQ + L++N G ++ T SN RP+KSL +KGK GR R NL+GKRVD+S R+ Sbjct: 286 IAVLQYHLVTLVNNDLPGLPQSRTRSN-RPIKSLRARLKGKDGRIRGNLMGKRVDFSART 344 Query: 354 VITVGPYLRLHQCGLPKKMALELFKPFI---YGKLELRGL----------ATTI------ 394 VIT P L + Q G+P +A+ L P I Y EL+ L AT+I Sbjct: 345 VITGDPNLSVDQVGVPYSIAMTLTYPEIVTPYNIEELKELVERGPYEWPGATSIVQDDGT 404 Query: 395 ----KAAKKMVEREEAVV---WDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAI 447 + + V+ W + + + VL NR P+LH++ I ++ Sbjct: 405 KIDLRFCNRSNNNANCVLQYGWKVERHMKNDDLVLFNRQPSLHKMSIMGHRVKILPYSTF 464 Query: 448 QLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVV 507 +L+ V + YNADFDGD+M +H+ + E + E + LMM I+SP P+I QD + Sbjct: 465 RLNLSVTSPYNADFDGDEMNLHLAQSYETRSEIKHLMMVPKQIVSPQGNRPVIGIVQDSL 524 Query: 508 LGLYYMTR 515 LGL+ +TR Sbjct: 525 LGLFLLTR 532 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 22/135 (16%) Query: 1230 TRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIAN 1289 TR I N++ +V+ + G IE + R +L++ V + +G V Y + + Sbjct: 1399 TRTISNDITEVFSVLG-------IEAVRRALLKELRTVIS-----FDGSYVNYRHLALLC 1446 Query: 1290 RELEANGKVGATYSRDLLGITKASL--ATESFISAASFQETTRVLTEAAVAGKRDELRGL 1347 + G L+ IT+ + + SF+ET +L +AA+ G+ D L G+ Sbjct: 1447 DNMTQKGH--------LMSITRHGMNRVDRGPLQKCSFEETVEILMDAAMFGETDYLNGV 1498 Query: 1348 KENVIVGRLIPAGTG 1362 ENV+VG+L P GT Sbjct: 1499 SENVMVGQLSPYGTA 1513 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/51 (49%), Positives = 30/51 (58%), Gaps = 5/51 (9%) Query: 893 GVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASR 943 G H + R LA GE +G IAAQSIGEP TQ+T+ TFH G S+ Sbjct: 1099 GEIQHQFYRSLAHS-----GEMVGTIAAQSIGEPATQMTLNTFHFAGVGSK 1144 Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 32/54 (59%) Query: 759 ITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTED 812 ++ ++ GL + F G R+G+ DTA KT+ +GY+ RRL+ +D +V D Sbjct: 830 VSNSYLSGLTPQEVFFHAMGGREGIIDTACKTSETGYIQRRLIKAMEDCMVQYD 883 >UniRef50_Q27095 DNA-directed RNA polymerase n=2 Tax=Trichomonas vaginalis RepID=Q27095_TRIVA Length = 1661 Score = 172 bits (436), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 170/688 (24%), Positives = 302/688 (43%), Gaps = 107/688 (15%) Query: 221 IKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATS--DLNDLYRRVINRNNR 278 ++LL F + P+WMIL +LPV P +RP V + G+ A S D+ +I N R Sbjct: 231 VRLL-GFNPKRSHPKWMILKILPVPPLAVRPQV-VSPGQSAPSQDDITHKLSDIIICNKR 288 Query: 279 LKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRG--RAITGSNKRPLKSLADMIKGKQG 336 L+ ++ D ++ + +LQ + + N + RA+T S RPLK ++ +KGK+G Sbjct: 289 LRAQRSESSTDTAMKETRTLLQYHITTYMINDKPSIERAVTKSG-RPLKVISQRLKGKEG 347 Query: 337 RFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKA 396 R +L GKR DYS RSVI+ + + Q G+P+++A L P + + L + + Sbjct: 348 HLRGHLSGKRDDYSARSVISPDTSISIDQVGVPEQLAKILTFPEVVTPTNQKWLESIVMK 407 Query: 397 AKKMVEREEAVVWD----------------------ILDEVIREHP-VLLNRAPTLHRLG 433 + V+ D I++ +R+ V+ NR P+LH++ Sbjct: 408 GHDDLGGANFVINDHGTRTDLSCCTDLSTITLSPGYIVERHLRDDDIVIFNRQPSLHKMS 467 Query: 434 IQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSP 493 + +++ G+ +L+P YNADFDGD+M +HVP + A+ E R +M I+SP Sbjct: 468 MMGHRALIMSGRTFRLNPCDTTPYNADFDGDEMNLHVPQSQTARTEVRHIMAVPKQIISP 527 Query: 494 ANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGM------------VLTGP---KEAERLY 537 +P+I QD +LG ++ RD + + M +L P K + Sbjct: 528 QANKPVIGLVQDALLGCRLLSKRDTFLTRNQVMNLMMWLPTTKDTILPPPCILKPVQLWS 587 Query: 538 RSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALG 597 + SL K+ Y +DAN + ++ A +I+ G +++ LG Sbjct: 588 GKQVFSLFLP-KISHNSYSQDAN-------KMDQNSIPLADRHVIIRDG---NLLAGILG 636 Query: 598 KKAISK----MLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEI 653 KK +++ +++ F +Q + G S+G+ D V+P+ + Sbjct: 637 KKTVARSEGSLIHVVINSYNTNIAKDFLNQTQLIVNNWLEHRGFSIGLIDCVVPDF---V 693 Query: 654 ISEAEAEVAEIQEQFQSGLVTA---------GERYNKVI--DIWAAANDRVSKAMMDNLQ 702 + E + E+ +++ + Q+ ++ A G Y + ++ N+ +SK Sbjct: 694 LQEVKHEIDDVESKVQATIIKAQDGQLERMPGMSYMQSFETEVNNLTNEILSK------- 746 Query: 703 TETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGL---------------- 746 T VIN + + NS+ M +G++G+ + Q+ G+ G Sbjct: 747 TYKVINAKIRGD-----NSLSEMLSAGSKGADTNMSQIIGVVGQQNMEGKRVKFGFNGRT 801 Query: 747 ---MAKPDGSIIETPITAN-FREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVD 802 K + ++E N + GL ++ G R G+ DTA KT+++GY+ RRLV Sbjct: 802 LPHFQKHEYGLVERGFCKNSYIAGLTPPEFLFHAMGGRTGIIDTACKTSDTGYIQRRLVK 861 Query: 803 VAQDLVVTEDDCGTHEGIMMTPVIEGGD 830 + V D + + I GGD Sbjct: 862 SMESHHVAYDGTVRNSQNEIVQFIYGGD 889 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 19/36 (52%), Positives = 25/36 (69%) Query: 908 IINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASR 943 I+ GE +G IA QSIGEP TQ+T+ TFH G ++ Sbjct: 1077 IVAPGEMVGTIAGQSIGEPSTQMTLNTFHFAGISAH 1112 >UniRef50_P04051 DNA-directed RNA polymerase III subunit RPC1 n=14 Tax=Dikarya RepID=RPC1_YEAST Length = 1460 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 197/763 (25%), Positives = 320/763 (41%), Gaps = 146/763 (19%) Query: 182 AEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKL-------LEAFVQSGNKP 234 E + L + +LE+ ++ ++LN K L K+IK ++A V SG +P Sbjct: 199 GEWKEVLAHNPELERYVKRCMDDLNPL----KTLNLFKQIKSADCELLGIDATVPSG-RP 253 Query: 235 EWMILTVLPVLPPDLRPLVPL-DGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVR 293 E I LP P +RP V + D DL ++ ++ +K LD + Sbjct: 254 ETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGLDKGISINNMM 313 Query: 294 NEKRMLQEAVDALLDNGRRGRAIT------GSNKRPLKSLADMIKGKQGRFRQNLLGKRV 347 LQ V +++ A+ G +P++ +KGKQGRFR NL GKRV Sbjct: 314 EHWDYLQLTVAMYINSDSVNPAMLPGSSNGGGKVKPIRGFCQRLKGKQGRFRGNLSGKRV 373 Query: 348 DYSGRSVITVGPYLRLHQCGLPKKMALELFKP---FIYGKLELRGL----ATTIKAAKKM 400 D+SGR+VI+ P L + + +P ++A L P Y + +L+ L A + Sbjct: 374 DFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELIVNGPNVHPGANYL 433 Query: 401 VEREEAVVWDI-------------LDEVIREH-----PVLLNRAPTLHRLGIQAFEPVLI 442 ++R E ++ + +V+ H VL NR P+LHRL I + + Sbjct: 434 LKRNEDARRNLRYGDRMKLAKNLQIGDVVERHLEDGDVVLFNRQPSLHRLSILSHYAKIR 493 Query: 443 EGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVP 502 + +L+ VC YNADFDGD+M +HVP T EA+ EA LM NN+L+P +GEPII Sbjct: 494 PWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGEPIIAA 553 Query: 503 SQDVVLGLYYMTR-----------DCVNAKGEGM---------------VLTGPKEAERL 536 +QD + G Y ++ ++ +G+ + TG + L Sbjct: 554 TQDFITGSYLISHKDSFYDRATLTQLLSMMSDGIEHFDIPPPAIMKPYYLWTGKQVFSLL 613 Query: 537 YRSG-----LASLHARVKVRITEYEKDANGELVAKTSLKDTTV---GRAILWMIVPK--- 585 + + +L A+ KV + K E+ S D V G IL ++ K Sbjct: 614 IKPNHNSPVVINLDAKNKVFVPPKSKSLPNEM----SQNDGFVIIRGSQILSGVMDKSVL 669 Query: 586 --GLPYSIVNQAL-------GKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSG 636 G +S+ L A+++M C R LG G Sbjct: 670 GDGKKHSVFYTILRDYGPQEAANAMNRMAKLCARFLG--------------------NRG 709 Query: 637 ASVGIDDMV----IPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDR 692 S+GI+D+ + +KK E++ A + E+ F G + N+ + A Sbjct: 710 FSIGINDVTPADDLKQKKEELVEIAYHKCDELITLFNKGELETQPGCNEEQTLEAKIGGL 769 Query: 693 VSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMA---- 748 +SK + + IN + ++N+ +MA G++GS + Q+ + G Sbjct: 770 LSKVREE--VGDVCIN------ELDNWNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGN 821 Query: 749 -KPDG----SIIETP-----------ITANFREGLNVLQYFISTHGARKGLADTALKTAN 792 PDG S+ P + +F GL+ ++ R+GL DTA+KTA Sbjct: 822 RVPDGFQDRSLPHFPKNSKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAE 881 Query: 793 SGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPL 835 +GY++RRL+ +DL D+ + GGD +PL Sbjct: 882 TGYMSRRLMKSLEDLSCQYDNTVRTSANGIVQFTYGGDGLDPL 924 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/31 (70%), Positives = 25/31 (80%) Query: 912 GEAIGVIAAQSIGEPGTQLTMRTFHIGGAAS 942 G AIG I AQSIGEPGTQ+T++TFH G AS Sbjct: 1086 GTAIGAIGAQSIGEPGTQMTLKTFHFAGVAS 1116 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 28/75 (37%), Positives = 46/75 (61%), Gaps = 3/75 (4%) Query: 1290 RELEANGKVGATYSRDLLGITKASLAT--ESFISAASFQETTRVLTEAAVAGKRDELRGL 1347 R ++ G V TY ++LGIT+ L+ +S + ASF++TT L +AA K+D + G+ Sbjct: 1353 RHIQLLGDV-MTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGV 1411 Query: 1348 KENVIVGRLIPAGTG 1362 E +I+G+ + GTG Sbjct: 1412 SECIILGQTMSIGTG 1426 >UniRef50_Q5CWY0 DNA-directed RNA polymerase n=3 Tax=Cryptosporidium RepID=Q5CWY0_CRYPV Length = 1871 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 178/718 (24%), Positives = 299/718 (41%), Gaps = 147/718 (20%) Query: 221 IKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLK 280 + +LE F KP ++++ LPV P +RP V + DL + + + NN +K Sbjct: 233 LDILETF-----KPGNLLISRLPVPPNCIRPSVTMGESGSNEDDLTVILSEITDLNNIIK 287 Query: 281 RLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRG-RAITGSNKRPL--KSLADMIKGKQGR 337 + + LQ L++ G + S P + + +KGK+GR Sbjct: 288 SQMKSGFQTFQLLGNWEFLQLQCTRLINADAPGVNQLLASKNIPKAGRGVCQRLKGKEGR 347 Query: 338 FRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKP------------------ 379 FR NL GKRVD+SGR+VI+ P + + + +P +A +L P Sbjct: 348 FRGNLSGKRVDFSGRTVISPDPNIEVDEVVVPMIIAKKLTYPERVNAINIDSLREAVLNG 407 Query: 380 --------FIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP-VLLNRAPTLH 430 ++Y G ++++ A + V E + DI++ ++ VL NR P+LH Sbjct: 408 HDIWPGACYVYKS---NGSKSSLRYANRRVVSERLEIGDIVERHMKTGDIVLFNRQPSLH 464 Query: 431 RLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNI 490 RL I + + V++ + + + CA YNADFDGD+M +H+P A+ E++ LM NN+ Sbjct: 465 RLSIMSHKVVVMPWRTFRFNECACAPYNADFDGDEMNLHLPQNELARSESKHLMGLMNNL 524 Query: 491 LSPANGEPIIVPSQDVVLGLY-------YMTRD------CVNAKGE-GMVLTGP------ 530 ++P NGEP+I +QD +LG+Y ++TRD C + G+ M L P Sbjct: 525 VTPRNGEPLIAATQDFLLGMYVLTGRDIFLTRDQFSQYCCHFSNGQIPMELPPPTILKPV 584 Query: 531 -----KEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTT------------ 573 K+ + ++ R+ V E+D + +K+ LKD Sbjct: 585 ELWTGKQVFNMILRPNSNEKERIDVSFELKERDYD----SKSDLKDLCPNEGYVVVRHSE 640 Query: 574 -----VGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTG 628 +G+ +L +GL + I+ + KK+ S+ + R + Sbjct: 641 LLAGAIGKKVLGGGSKEGLFFYILLENNAKKS-SECMGRISRFVS--------------- 684 Query: 629 FAYAARSGASVGIDDMVIPE-----KKHEIISEAEAEVAEIQEQFQSGLVT--AGERYNK 681 Y A G ++GIDD V P K ++ + V + ++ G +T G Sbjct: 685 -RYLANKGMTIGIDD-VTPNAELLVAKKNLLEDGYQRVQDEINSYEKGKLTPHPGLSLED 742 Query: 682 VIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSF---NSIYMMADSGARGSAAQIR 738 +++ K ++D+++ E + +S N +M SGA+G I Sbjct: 743 TLELKV-------KKILDDIRNE------AGKASHISLPPSNKPLLMYLSGAKGQLINIA 789 Query: 739 QLAGMRGLMAKPDGSIIETPIT---------------------ANFREGLNVLQYFISTH 777 Q+ G G I+ T +F GL ++F T Sbjct: 790 QMVACVG-QQNVAGQRIQNGFTNRTLPHFKMNCVDGRSRGFVGNSFFSGLQPDEFFFHTM 848 Query: 778 GARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPL 835 R+GL DTA+KTA +GY+ RRLV +DL + D + I G D P+ Sbjct: 849 SGREGLVDTAVKTAETGYMQRRLVKALEDLCIKYDQTVRTSDGQIIQFIYGDDGLNPM 906 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 110/460 (23%), Positives = 198/460 (43%), Gaps = 97/460 (21%) Query: 908 IINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVV 967 I GEA+G IAAQSIGEPGTQ+T++TFH G AS ++ + +K ++ Sbjct: 1457 ITEPGEAVGAIAAQSIGEPGTQMTLKTFHFAGVASMNV-----------TLGVPRIKEII 1505 Query: 968 NSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPV 1027 N++ K++ +L+ +F ++ G+++ E V+ E + + P+ + + Sbjct: 1506 NAATKILTPIIEAKLENDSDFNYA----QIVKGSIVKTLLNEVVSDIEEL--YSPNGVFI 1559 Query: 1028 ITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGND 1087 ++ + I G + +++ V DS + G + LK+ D Q Sbjct: 1560 NINLN-----EETIKGHYLD--------INAYTVRDSI--VSHGPISKIKLKLEDIQ--- 1601 Query: 1088 VLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL-FE 1146 VL D+ L G I Q+ +G +G + G+ ++ F+ Sbjct: 1602 VL----DLWKLSILIGGGISQIGSSSNNING---------TGNVNTLNTGIGNTMNVYFQ 1648 Query: 1147 ARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVER 1206 + K+ +SGI G +R VI D DP GE+ + Sbjct: 1649 TQLLKKGLQNVVVSGI-------PGIKRSVIRQDDKEDP-------------ITGEKRKC 1688 Query: 1207 GDVISDGPEAPHDILRLRGVHAV--TRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 1264 + +G + +L+L G++ + T + N V +V + G++ K VI++++ + Sbjct: 1689 YSLAVEG----YGLLKLMGINGIIGTTTVSNHVMEVREVLGIEAARK---VIIQEVQK-- 1739 Query: 1265 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLAT--ESFISA 1322 ++A S D I R ++ + T+ D+LGI++ + S + Sbjct: 1740 -CMDAYSMD-------------IDLRHIQLLADI-MTFRGDVLGISRFGIQKMRTSTLML 1784 Query: 1323 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362 ASF+ET L EAA + D + G+ E VI+G+ I GTG Sbjct: 1785 ASFEETNEHLFEAAFQNRVDPVFGVSECVIMGKPIKIGTG 1824 >UniRef50_O94666 DNA-directed RNA polymerase III subunit rpc1 n=5 Tax=Eukaryota RepID=RPC1_SCHPO Length = 1405 Score = 169 bits (427), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 204/856 (23%), Positives = 347/856 (40%), Gaps = 158/856 (18%) Query: 80 HRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLL----DMPLRDI 135 ++ + C CG + G+++LA P HI + K+ + + + + L D Sbjct: 61 NKQINCATCGESMADCM---GHFGYVKLALPVFHIGYFKATLTILQNICKDCSSVLLSDQ 117 Query: 136 ERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGA-----------EA 184 E+ + + + G+ NL R QI + DA G E Sbjct: 118 EKRQFLKD--LRRPGIDNLRRSQICKRINDHCKKMRRCSKCDAMQGVVKKAGPLKIIHER 175 Query: 185 IQALLKSMDLEQECEQLREELNETNSETKRKKLTKR------IKLLEAFVQ--------- 229 + + KS D E+ +E +T E K L+K +K+L F Q Sbjct: 176 FRYVRKSQDDEENFRHSFDEALKTIPELKMH-LSKAHDDLNPLKVLNLFKQITPVDCELL 234 Query: 230 ----SGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDL 285 +PE ++ +P P +RP V +G DL +I ++ ++ L Sbjct: 235 GMDPEHGRPENLLWRYVPAPPVCIRPSVAQEGAT-TEDDLTVKITEIIWTSSLIRAALSK 293 Query: 286 AAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGK 345 P + + +Q ++ +++ G + +P++ +KGKQGRFR NL GK Sbjct: 294 GTPISNLMEQWEFMQLSIAMYINSEMPGLRPSDMPSKPIRGFCQRLKGKQGRFRGNLSGK 353 Query: 346 RVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIK-------AAK 398 RVD+SGR+VI+ P LR+ Q +P ++A L P + L I+ A Sbjct: 354 RVDFSGRTVISPDPNLRIDQVAVPYRIAKILTFPERVTTQNKKHLQDCIRNGPDVHPGAN 413 Query: 399 KMVEREEAV-----------------VWDILDEVIREHPV-LLNRAPTLHRLGIQAFEPV 440 +++RE + DI++ + ++ V L NR P+LH+L I A Sbjct: 414 YVIDRESGFKRFLRFGNRNRIADDLKIGDIVERHLHDNDVVLFNRQPSLHKLSIMAHLVK 473 Query: 441 LIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPII 500 + + ++ + VC YNADFDGD+M +HVP T EA+ EA LM NN++SP NGEPII Sbjct: 474 VRPWRTLRFNECVCGPYNADFDGDEMNLHVPQTEEAKTEALELMGIKNNLVSPRNGEPII 533 Query: 501 VPSQ------------DVVLGLYYMTRDCVNAKGEGMVLTGPKEA---ERLYRSG----- 540 +Q D L ++ C + P A R +G Sbjct: 534 AATQDFITAAYLLSLKDTFLDRKSISNICCYMMDASTHIDLPPPAIIKPRCLWTGKQVFT 593 Query: 541 -----------LASLHA------RVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIV 583 L +L A R+K + E ++ + + V ++++ Sbjct: 594 VLMKPNRFSKVLVNLDAKTRSFSRIKSKTPEMCPKDGYLMIRNSEIIAGVVDKSVVGDGK 653 Query: 584 PKGLPYSIVNQ--AL-GKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVG 640 L Y I+ AL +AI+++ C R LG + G S+G Sbjct: 654 KDSLFYVILRDYGALEAAEAITRLSKMCARFLGNR--------------------GFSIG 693 Query: 641 IDDM----VIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKA 696 I+D+ + +K ++++A A + Q+ G++ ++ + A + +SK Sbjct: 694 IEDVQPGKSLSSQKEILVNKAYATSDDFIMQYAKGILECQPGMDQEATLEAKISSTLSKV 753 Query: 697 MMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRG---LMAK--PD 751 D E ++ G NS +MA G++GS + Q+ G + K PD Sbjct: 754 RDD--VGEICMDELGPA------NSPLIMATCGSKGSKINVSQMVACVGQQIISGKRVPD 805 Query: 752 G---------------SIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYL 796 G + + ++ +F GL ++ R+GL DTA+KTA +GY+ Sbjct: 806 GFQDRSLPHFHKNSKHPLAKGFVSNSFYSGLTPTEFLFHAISGREGLVDTAVKTAETGYM 865 Query: 797 TRRLVDVAQDLVVTED 812 +RRL+ +DL D Sbjct: 866 SRRLMKSLEDLSSAYD 881 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 20/37 (54%), Positives = 27/37 (72%) Query: 909 INKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAA 945 + G A+G I AQSIGEPGTQ+T++TFH G A++ Sbjct: 1041 VEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVAAQTT 1077 Score = 43.1 bits (100), Expect = 0.071, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 38/60 (63%), Gaps = 2/60 (3%) Query: 1305 DLLGITKASLAT--ESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362 ++LGIT+ +A +S ++ ASF++TT L AA +D + G+ E +++G+L P GT Sbjct: 1313 EVLGITRFGVAKMKDSVLALASFEKTTDHLFNAAARFAKDSIEGISECIVLGKLAPIGTN 1372 >UniRef50_B9PZ91 DNA-directed RNA polymerase n=3 Tax=Toxoplasma gondii RepID=B9PZ91_TOXGO Length = 1747 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 174/680 (25%), Positives = 289/680 (42%), Gaps = 97/680 (14%) Query: 215 KKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVIN 274 K L +RI+ E + PE ++L+ L V P +RP V + DL + + Sbjct: 301 KNLLERIRPSECEILDIVSPEKLLLSRLLVPPSCIRPSVTIGEQGTTEDDLTCVLSDIAE 360 Query: 275 RNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALL--DNGRRGRAITGSN-KRPLKSLADMI 331 NN L+ + LQ L+ D + + N +P + + + Sbjct: 361 LNNVLQSHVQAGFHTNQFLGIWEFLQLQCTRLINADAPAVSQLLASKNISKPGRGICQRL 420 Query: 332 KGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLA 391 KGK+GRFR NL GKRVD+SGR+VI+ P +++ +P+ +A L P ++ + L Sbjct: 421 KGKEGRFRGNLSGKRVDFSGRTVISPDPNANVYEVVVPEWVAKRLTFPERVNRVNIEVLR 480 Query: 392 TTI-------------------KAAKKMVEREEAVVWDILDEVIREH-----PVLLNRAP 427 + K + + R + + +V+ H VL NR P Sbjct: 481 AAVLKGCSDWPGACYVNKVDGSKCSLRYANRRQVAENLQIGDVVERHLCNGDVVLFNRQP 540 Query: 428 TLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMST 487 +LHR+ I A ++ + + + VC+ YNADFDGD+M +H+P T EA+ EA LM Sbjct: 541 SLHRMSIMAHRARVMPWRTFRFNECVCSPYNADFDGDEMNLHLPQTHEARAEALYLMGVV 600 Query: 488 NNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGL------ 541 NN+++P NGEP+I +QD + Y +T V + L + L R L Sbjct: 601 NNLVTPKNGEPLIAATQDFLSSSYMLTHKDVFLTRDQFCLICSYFTDGLSRVDLPPPTIL 660 Query: 542 --ASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKK 599 L +V + N ++ LK+ A I P P+ + A Sbjct: 661 KPVELWTGKQVISVLLRPNRNSFVMVNFQLKEREFSAA---RIPPGEAPFMCPSDAYVIF 717 Query: 600 AISKMLNTCY--RILGLKPTVIFADQIMYTGFAYA---------------ARSGASVGID 642 S+++ C ++LG +F I A A A G ++GID Sbjct: 718 RHSELVAGCIGKKVLGDAKFGLFFHLIRDNSPAQAAACMGRIAKLSARWFANRGMTIGID 777 Query: 643 DMVIPEK-----KHEIISEAEAEVAEIQEQFQSGLVT--AGERYNKVIDIWAAANDRVSK 695 D V P K +I++ VA+ + ++ G + G + +++ RV K Sbjct: 778 D-VTPSPTLLAAKKDILNHGYNLVAQEIQMYKKGALQPHPGCTLEQTLEV------RV-K 829 Query: 696 AMMDNLQTETVINRDGQEEKQV--SFNSIYMMADSGARGSAAQIRQL---------AGMR 744 +++D+L+ E G+ +V N +M +SGA+G+ I Q+ +G R Sbjct: 830 SILDDLRNEA-----GKACNRVLHPLNKPLIMFNSGAKGALINIAQMIACVGQQNVSGQR 884 Query: 745 GLMAKPDGSIIETP-----------ITANFREGLNVLQYFISTHGARKGLADTALKTANS 793 ++ P + ++F GL ++F T R+GL DTA+KTA + Sbjct: 885 IQNGFVSRTLPHFPLNCRDAKSRGFVASSFYSGLQPDEFFFHTMSGREGLVDTAVKTAET 944 Query: 794 GYLTRRLVDVAQDLVVTEDD 813 GY+ RRL+ +DL + D+ Sbjct: 945 GYMQRRLMKALEDLSIRYDN 964 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 12/76 (15%) Query: 898 CYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGS 957 C R + I GEA+G + AQSIGEPGTQ+T++TFH G AS + Sbjct: 1367 CSWRKYVKA-ISEAGEAVGAMGAQSIGEPGTQMTLKTFHFAGVASMNV-----------T 1414 Query: 958 IKLSNVKSVVNSSGKL 973 + + +K ++N++ K+ Sbjct: 1415 LGVPRIKEIINAAQKI 1430 >UniRef50_Q4SF83 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tetraodon nigroviridis RepID=Q4SF83_TETNG Length = 1745 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 187/712 (26%), Positives = 294/712 (41%), Gaps = 158/712 (22%) Query: 233 KPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIV 292 +PEWMI+TVLPV P +RP V + G DL ++ NN+L+R A ++ Sbjct: 65 RPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHVI 124 Query: 293 RNEKRMLQEAVDALLDNGRRG--RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYS 350 + ++LQ V ++DN G RA+ S RPLKS+ +KGK+GR R NL+GKRVD+S Sbjct: 125 AEDVKLLQFHVATMVDNELPGLPRAMQKSG-RPLKSIKQRLKGKEGRVRGNLMGKRVDFS 183 Query: 351 GRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWD 410 R+VIT P L++ Q G+P+ +A + P I + L ++ + ++ D Sbjct: 184 ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD 243 Query: 411 ILDEV-IREHP-------------------------VLLNRAPTLHRLGIQAFEPVLIEG 444 D + +R HP V+ NR PTLH++ + ++ Sbjct: 244 NGDRIDLRFHPKPSDLHLQIGYKASSKALHMCDGDIVIFNRQPTLHKMSMMGHRVRILPW 303 Query: 445 KAIQLH-----------------PL----VC-----------------------AAYNAD 460 +L+ PL VC YNAD Sbjct: 304 STFRLNLRYRLKQGRADAKAQGKPLIEFPVCRINALAQSSRYCMYFPDFCFSVTTPYNAD 363 Query: 461 FDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVN 519 FDGD+M +H+P +LE + E + L M I++P + P++ QD + + T RD Sbjct: 364 FDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFL 423 Query: 520 AKGEGMVL---------TGPKEA---ERLYRSG--LASL----HARVKVRITEYEKDANG 561 +GE M L P+ A R +G + SL H V + + D + Sbjct: 424 DRGEVMNLLMFLSTWDGKMPQPAILKPRALWTGKQIFSLIIPGHINVIRTHSTHPDDEDS 483 Query: 562 ELVAKTSLKDTTV----GRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPT 617 S DT V G I+ ++ K +LG A S +++ Y +G T Sbjct: 484 GPYKHISPGDTKVIVENGELIMGILCKK---------SLGTSAGS-LVHISYLEMGHDIT 533 Query: 618 VIFADQIMYTGFAYAARSGASVGIDDMVIPEKKH----EIISEAEAEVAEIQEQFQSGLV 673 +F I + G S+GI D + K + I +A+ +V E+ E+ + + Sbjct: 534 RLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHNNEL 593 Query: 674 --TAGERY-----NKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMA 726 T G N+V I A D+ + +L +N+ M Sbjct: 594 EPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLS---------------EYNNFKSMV 638 Query: 727 DSGARGSAAQIRQ---LAGMRGLMAK--PDGSIIET----------PITANFRE-----G 766 +G++GS I Q + G + + K P G T P + F E G Sbjct: 639 VAGSKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAG 698 Query: 767 LNVLQYFISTHGARKGLADTALKTANSG------YLTRRLVDVAQDLVVTED 812 L ++F G R+GL DTA+KTA +G Y+ RRL+ + ++V D Sbjct: 699 LTPTEFFFHAMGGREGLIDTAVKTAETGKFVCRRYIQRRLIKSMESVMVKYD 750 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/153 (23%), Positives = 62/153 (40%), Gaps = 42/153 (27%) Query: 1212 DGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGS 1271 DG P ++ G+ AV + + E+ V G +N +H+ ++ M Sbjct: 1270 DGDRVPSSGFQVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTM----------- 1318 Query: 1272 SDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESF--ISAASFQETT 1329 T L+ IT+ + + + SF+ET Sbjct: 1319 -----------------------------TCRGHLMAITRHGINRQDTGPLMKCSFEETV 1349 Query: 1330 RVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362 VL EA+ G+ D ++G+ EN+++G+L PAGTG Sbjct: 1350 DVLMEASSHGECDPMKGVSENIMLGQLAPAGTG 1382 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 18/36 (50%), Positives = 27/36 (75%) Query: 908 IINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASR 943 I + GE +G +AAQS+GEP TQ+T+ TFH G +++ Sbjct: 989 IAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAK 1024 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A4SHV0 DNA-directed RNA polymerase subunit beta' n=23 T... 1830 0.0 UniRef50_Q492C0 DNA-directed RNA polymerase subunit beta' n=74 T... 1821 0.0 UniRef50_A1ALT5 DNA-directed RNA polymerase subunit beta' n=2 Ta... 1684 0.0 UniRef50_A0L5W7 DNA-directed RNA polymerase subunit beta' n=4 Ta... 1682 0.0 UniRef50_Q2N5Q5 DNA-directed RNA polymerase subunit beta' n=126 ... 1621 0.0 UniRef50_B2UQY1 DNA-directed RNA polymerase subunit beta' n=5 Ta... 1564 0.0 UniRef50_Q7URW4 DNA-directed RNA polymerase subunit beta' n=8 Ta... 1550 0.0 UniRef50_C1A6N8 DNA-directed RNA polymerase n=2 Tax=Bacteria Rep... 1528 0.0 UniRef50_Q5GRY9 DNA-directed RNA polymerase subunit beta' n=1189... 1510 0.0 UniRef50_D2QMP3 DNA-directed RNA polymerase, beta' subunit n=4 T... 1499 0.0 UniRef50_UPI00016C3582 DNA-directed RNA polymerase beta chain n=... 1499 0.0 UniRef50_Q2S1Q6 DNA-directed RNA polymerase subunit beta' n=62 T... 1497 0.0 UniRef50_C8PSU9 DNA-directed RNA polymerase n=2 Tax=Spirochaetac... 1493 0.0 UniRef50_Q3KM48 DNA-directed RNA polymerase subunit beta' n=63 T... 1483 0.0 UniRef50_B2KEN0 DNA-directed RNA polymerase subunit beta' n=1 Ta... 1477 0.0 UniRef50_Q8RHI7 DNA-directed RNA polymerase subunit beta' n=22 T... 1467 0.0 UniRef50_B0SAG0 DNA-directed RNA polymerase subunit beta' n=33 T... 1466 0.0 UniRef50_Q3ATP4 DNA-directed RNA polymerase subunit beta' n=12 T... 1442 0.0 UniRef50_C9RQN4 DNA-directed RNA polymerase n=1 Tax=Fibrobacter ... 1435 0.0 UniRef50_A3EVS7 DNA-directed RNA polymerase n=9 Tax=Bacteria Rep... 1373 0.0 UniRef50_C0QQL7 DNA-directed RNA polymerase n=7 Tax=Bacteria Rep... 1318 0.0 UniRef50_B2V7L9 DNA-directed RNA polymerase subunit beta' n=11 T... 1313 0.0 UniRef50_B0VGC0 DNA-directed RNA polymerase n=2 Tax=Bacteria Rep... 1290 0.0 UniRef50_B1GZ76 DNA-directed RNA polymerase subunit beta' n=2 Ta... 1290 0.0 UniRef50_D1BP71 DNA-directed RNA polymerase n=10 Tax=Veillonella... 1289 0.0 UniRef50_A5D5I3 DNA-directed RNA polymerase subunit beta' n=11 T... 1253 0.0 UniRef50_A8Z5T2 DNA-directed RNA polymerase subunit beta' n=30 T... 1239 0.0 UniRef50_C9RPE5 DNA-directed RNA polymerase n=1 Tax=Fibrobacter ... 1238 0.0 UniRef50_A5N4P0 DNA-directed RNA polymerase subunit beta' n=5 Ta... 1222 0.0 UniRef50_A9KJL3 DNA-directed RNA polymerase subunit beta' n=170 ... 1192 0.0 UniRef50_B0S2E5 DNA-directed RNA polymerase subunit beta' n=47 T... 1177 0.0 UniRef50_C7GZQ7 DNA-directed RNA polymerase n=2 Tax=Clostridiale... 1167 0.0 UniRef50_Q04E86 DNA-directed RNA polymerase subunit beta' n=228 ... 1161 0.0 UniRef50_A8YXJ9 DNA-directed RNA polymerase subunit beta' n=25 T... 1158 0.0 UniRef50_UPI0001C379E7 DNA-directed RNA polymerase subunit beta'... 1148 0.0 UniRef50_Q3ZX00 DNA-directed RNA polymerase subunit beta' n=5 Ta... 1120 0.0 UniRef50_B2UUV9 DNA-directed RNA polymerase subunit beta' n=5926... 1112 0.0 UniRef50_C4ZB95 DNA-directed RNA polymerase n=5 Tax=Firmicutes R... 1111 0.0 UniRef50_Q8KTP7 DNA-directed RNA polymerase n=1 Tax=Candidatus T... 1092 0.0 UniRef50_A8R9Q5 DNA-directed RNA polymerase n=3 Tax=Bacteria Rep... 1080 0.0 UniRef50_A9NEL8 DNA-directed RNA polymerase subunit beta' n=9 Ta... 1050 0.0 UniRef50_C8W807 DNA-directed RNA polymerase n=6 Tax=Actinobacter... 1041 0.0 UniRef50_D1C2J9 DNA-directed RNA polymerase n=1 Tax=Sphaerobacte... 1005 0.0 UniRef50_UPI00016BFCAD DNA-directed RNA polymerase, beta'''' sub... 995 0.0 UniRef50_B9KZZ3 DNA-directed RNA polymerase n=2 Tax=Bacteria Rep... 993 0.0 UniRef50_Q05FH9 DNA-directed RNA polymerase subunit beta' n=17 T... 986 0.0 UniRef50_Q2ST47 DNA-directed RNA polymerase subunit beta' n=5 Ta... 983 0.0 UniRef50_C9M941 DNA-directed RNA polymerase n=1 Tax=Jonquetella ... 977 0.0 UniRef50_A5USR6 DNA-directed RNA polymerase subunit beta' n=5 Ta... 951 0.0 UniRef50_C5SEJ2 DNA-directed RNA polymerase n=6 Tax=Proteobacter... 941 0.0 UniRef50_D1B5Y2 DNA-directed RNA polymerase n=1 Tax=Thermanaerov... 932 0.0 UniRef50_C6UN03 DNA-directed RNA polymerase n=1 Tax=Candidatus H... 930 0.0 UniRef50_O21238 DNA-directed RNA polymerase n=3 Tax=Eukaryota Re... 927 0.0 UniRef50_Q2W2I2 DNA-directed RNA polymerase subunit beta' n=10 T... 926 0.0 UniRef50_P47582 DNA-directed RNA polymerase subunit beta' n=6 Ta... 922 0.0 UniRef50_A4FPP2 DNA-directed RNA polymerase subunit beta' n=54 T... 914 0.0 UniRef50_D1Y777 DNA-directed RNA polymerase n=1 Tax=Pyramidobact... 912 0.0 UniRef50_C1TLI9 DNA-directed RNA polymerase n=1 Tax=Dethiosulfov... 912 0.0 UniRef50_A8LC63 DNA-directed RNA polymerase subunit beta' n=26 T... 909 0.0 UniRef50_B1AIH6 DNA-directed RNA polymerase subunit beta' n=15 T... 903 0.0 UniRef50_Q1AU23 DNA-directed RNA polymerase subunit beta' n=11 T... 898 0.0 UniRef50_A9B6J1 DNA-directed RNA polymerase subunit beta' n=3 Ta... 895 0.0 UniRef50_UPI0001C30E3D DNA-directed RNA polymerase, beta'''' sub... 894 0.0 UniRef50_B3DTE1 DNA-directed RNA polymerase subunit beta' n=50 T... 889 0.0 UniRef50_A4E9H2 DNA-directed RNA polymerase n=1 Tax=Collinsella ... 877 0.0 UniRef50_C5CGD8 DNA-directed RNA polymerase n=1 Tax=Kosmotoga ol... 853 0.0 UniRef50_A7HNY1 DNA-directed RNA polymerase subunit beta' n=5 Ta... 842 0.0 UniRef50_Q1J0P7 DNA-directed RNA polymerase subunit beta' n=11 T... 837 0.0 UniRef50_C4LL70 DNA-directed RNA polymerase subunit beta' n=65 T... 834 0.0 UniRef50_B1L934 DNA-directed RNA polymerase subunit beta' n=8 Ta... 805 0.0 UniRef50_A7BVC2 DNA-directed RNA polymerase n=1 Tax=Beggiatoa sp... 775 0.0 UniRef50_A9BF32 DNA-directed RNA polymerase subunit beta' n=1 Ta... 773 0.0 UniRef50_Q3M5C9 DNA-directed RNA polymerase subunit gamma n=11 T... 732 0.0 UniRef50_D0EVW4 DNA-directed RNA polymerase n=1 Tax=Bryopsis hyp... 729 0.0 UniRef50_B5Y993 DNA-directed RNA polymerase n=1 Tax=Coprothermob... 726 0.0 UniRef50_Q110H2 DNA-directed RNA polymerase subunit gamma n=543 ... 725 0.0 UniRef50_O14802 DNA-directed RNA polymerase III subunit RPC1 n=3... 724 0.0 UniRef50_D2V0G9 Predicted protein n=1 Tax=Naegleria gruberi RepI... 722 0.0 UniRef50_D1HEN1 DNA-directed RNA polymerase (Fragment) n=1 Tax=V... 713 0.0 UniRef50_B0EG66 DNA-directed RNA polymerase n=2 Tax=Entamoeba Re... 712 0.0 UniRef50_B8C4M1 DNA-directed RNA polymerase n=1 Tax=Thalassiosir... 708 0.0 UniRef50_B6K857 DNA-directed RNA polymerase n=9 Tax=Eukaryota Re... 703 0.0 UniRef50_Q9AXN0 DNA-directed RNA polymerase n=4 Tax=Rhodophyta R... 691 0.0 UniRef50_Q7X881 DNA-directed RNA polymerase n=6 Tax=Magnoliophyt... 691 0.0 UniRef50_C4R7G6 DNA-directed RNA polymerase n=5 Tax=Saccharomyce... 689 0.0 UniRef50_O94666 DNA-directed RNA polymerase III subunit rpc1 n=5... 684 0.0 UniRef50_Q84KP6 DNA-directed RNA polymerase n=6 Tax=Eukaryota Re... 682 0.0 UniRef50_Q0U9K8 DNA-directed RNA polymerase n=242 Tax=root RepID... 680 0.0 UniRef50_C7P941 DNA-directed RNA polymerase n=26 Tax=root RepID=... 679 0.0 UniRef50_Q9LVH0 DNA-directed RNA polymerase n=7 Tax=Eukaryota Re... 677 0.0 UniRef50_B9GIK9 DNA-directed RNA polymerase n=2 Tax=Magnoliophyt... 672 0.0 UniRef50_B7Z6H4 DNA-directed RNA polymerase n=21 Tax=Coelomata R... 672 0.0 UniRef50_P41556 DNA-directed RNA polymerase subunit A' n=22 Tax=... 671 0.0 UniRef50_O27125 DNA-directed RNA polymerase subunit A' n=5 Tax=A... 667 0.0 UniRef50_P11512 DNA-directed RNA polymerase subunit A' n=23 Tax=... 666 0.0 UniRef50_A9CTJ8 DNA-directed RNA polymerase n=1 Tax=Enterocytozo... 665 0.0 UniRef50_Q8SRM3 DNA-directed RNA polymerase n=2 Tax=Apansporobla... 665 0.0 UniRef50_C5YGY9 DNA-directed RNA polymerase n=716 Tax=Eukaryota ... 663 0.0 UniRef50_P24928 DNA-directed RNA polymerase II subunit RPB1 n=93... 657 0.0 UniRef50_P04052 DNA-directed RNA polymerase II subunit RPB1 n=13... 657 0.0 UniRef50_O96452 DNA-directed RNA polymerase n=3 Tax=Eukaryota Re... 657 0.0 UniRef50_UPI0001C41F18 DNA-directed RNA polymerase subunit A'' R... 656 0.0 UniRef50_A8IRZ2 DNA-directed RNA polymerase n=3 Tax=Eukaryota Re... 655 0.0 UniRef50_A4S3M0 DNA-directed RNA polymerase n=34 Tax=Eukaryota R... 653 0.0 UniRef50_D2VMG0 RNA polymerase II largest subunit n=1 Tax=Naegle... 651 0.0 UniRef50_D2VNK8 RNA polymerase II n=2 Tax=Naegleria gruberi RepI... 649 0.0 UniRef50_Q9MUS6 DNA-directed RNA polymerase subunit beta' n=2 Ta... 647 0.0 UniRef50_Q8SSC4 DNA-directed RNA polymerase II subunit RPB1 n=17... 644 0.0 UniRef50_P35084 DNA-directed RNA polymerase II subunit rpb1 n=10... 641 0.0 UniRef50_B6AG69 DNA-directed RNA polymerase n=1 Tax=Cryptosporid... 641 0.0 UniRef50_A2DEX5 DNA-directed RNA polymerase n=1 Tax=Trichomonas ... 634 e-180 UniRef50_P04050 DNA-directed RNA polymerase II subunit RPB1 n=21... 631 e-179 UniRef50_Q5CUJ2 DNA-directed RNA polymerase (Fragment) n=6 Tax=E... 630 e-178 UniRef50_A9VCM2 DNA-directed RNA polymerase n=3 Tax=Fungi/Metazo... 628 e-178 UniRef50_UPI00017927B1 PREDICTED: similar to AGAP004703-PA n=1 T... 624 e-177 UniRef50_B6KEC6 DNA-directed RNA polymerase n=5 Tax=Eukaryota Re... 622 e-176 UniRef50_B8BQ02 DNA-directed RNA polymerase n=1 Tax=Thalassiosir... 620 e-175 UniRef50_P09846 DNA-directed RNA polymerase subunit A' n=4 Tax=M... 618 e-175 UniRef50_D0NAG7 DNA-directed RNA polymerase n=1 Tax=Phytophthora... 615 e-174 UniRef50_Q9TL05 DNA-directed RNA polymerase subunit beta' n=1 Ta... 614 e-174 UniRef50_Q9HM79 DNA-directed RNA polymerase subunit A' n=16 Tax=... 614 e-173 UniRef50_C4VAM1 DNA-directed RNA polymerase n=1 Tax=Nosema ceran... 610 e-172 UniRef50_Q86AQ5 DNA-directed RNA polymerase III subunit rpc1 n=8... 607 e-172 UniRef50_B7G2E6 DNA-directed RNA polymerase n=1 Tax=Phaeodactylu... 606 e-171 UniRef50_B0WFY1 DNA-directed RNA polymerase n=5 Tax=Diptera RepI... 605 e-171 UniRef50_B9PZ91 DNA-directed RNA polymerase n=3 Tax=Toxoplasma g... 601 e-170 UniRef50_B1L739 DNA-directed RNA polymerase n=1 Tax=Candidatus K... 593 e-167 UniRef50_Q6CB20 DNA-directed RNA polymerase n=1 Tax=Yarrowia lip... 593 e-167 UniRef50_P04051 DNA-directed RNA polymerase III subunit RPC1 n=1... 593 e-167 UniRef50_D1H4X6 DNA-directed RNA polymerase (Fragment) n=1 Tax=V... 590 e-166 UniRef50_C5DJG5 DNA-directed RNA polymerase n=3 Tax=Saccharomyce... 589 e-166 UniRef50_B3RW43 DNA-directed RNA polymerase n=1 Tax=Trichoplax a... 587 e-165 UniRef50_C5KZ53 DNA-directed RNA polymerase n=4 Tax=Perkinsus ma... 585 e-165 UniRef50_A7AP17 DNA-directed RNA polymerase n=1 Tax=Babesia bovi... 585 e-165 UniRef50_B3PM77 DNA-directed RNA polymerase subunit beta' n=2 Ta... 581 e-164 UniRef50_Q1ACN5 DNA-directed RNA polymerase subunit beta' n=2 Ta... 580 e-163 UniRef50_Q4U940 DNA-directed RNA polymerase n=2 Tax=Theileria Re... 579 e-163 UniRef50_Q5CWY0 DNA-directed RNA polymerase n=3 Tax=Cryptosporid... 577 e-162 UniRef50_C4M5C2 DNA-directed RNA polymerase n=4 Tax=Entamoeba Re... 575 e-162 UniRef50_C5LSN9 DNA-directed RNA polymerase n=7 Tax=Perkinsus ma... 575 e-162 UniRef50_Q9AVW8 DNA-directed RNA polymerase n=2 Tax=Cryptophyta ... 575 e-162 UniRef50_C4QF52 DNA-directed RNA polymerase n=2 Tax=Schistosoma ... 575 e-162 UniRef50_A8N128 DNA-directed RNA polymerase n=59 Tax=Dikarya Rep... 574 e-162 UniRef50_C7DHC4 DNA-directed RNA polymerase n=1 Tax=Candidatus M... 570 e-160 UniRef50_Q8TXI8 DNA-directed RNA polymerase n=1 Tax=Methanopyrus... 570 e-160 UniRef50_Q9BMP2 DNA-directed RNA polymerase (Fragment) n=1 Tax=S... 568 e-160 UniRef50_O77165 DNA-directed RNA polymerase (Fragment) n=3 Tax=c... 567 e-159 UniRef50_Q4A5S8 DNA-directed RNA polymerase subunit beta' n=3 Ta... 565 e-159 UniRef50_Q8SS15 DNA-directed RNA polymerase n=2 Tax=Apansporobla... 565 e-159 UniRef50_Q74M69 DNA-directed RNA polymerase n=1 Tax=Nanoarchaeum... 563 e-158 UniRef50_B2ADZ3 DNA-directed RNA polymerase n=4 Tax=Dikarya RepI... 562 e-158 UniRef50_Q0P3M5 DNA-directed RNA polymerase subunit beta' n=1 Ta... 561 e-158 UniRef50_Q27095 DNA-directed RNA polymerase n=2 Tax=Trichomonas ... 561 e-158 UniRef50_Q9BHZ7 DNA-directed RNA polymerase (Fragment) n=1 Tax=L... 560 e-157 UniRef50_P56763 DNA-directed RNA polymerase subunit beta' n=180 ... 560 e-157 UniRef50_C4XEN7 DNA-directed RNA polymerase n=2 Tax=Mycoplasma R... 558 e-157 UniRef50_B6AIF4 DNA-directed RNA polymerase n=1 Tax=Cryptosporid... 557 e-157 UniRef50_Q9BHM4 DNA-directed RNA polymerase (Fragment) n=1 Tax=P... 557 e-156 UniRef50_A4GYP9 DNA-directed RNA polymerase subunit beta' n=15 T... 556 e-156 UniRef50_Q3SE61 DNA-directed RNA polymerase n=2 Tax=Paramecium t... 555 e-156 UniRef50_P17545 DNA-directed RNA polymerase II subunit RPB1-B n=... 553 e-155 UniRef50_C7BEK7 DNA-directed RNA polymerase n=2 Tax=Chlorophyta ... 553 e-155 UniRef50_A9CTM9 DNA-directed RNA polymerase n=1 Tax=Enterocytozo... 552 e-155 UniRef50_Q32RG1 DNA-directed RNA polymerase subunit beta' n=2 Ta... 552 e-155 UniRef50_Q4SF83 DNA-directed RNA polymerase (Fragment) n=1 Tax=T... 551 e-155 UniRef50_UPI00006CF1E9 RNA polymerase Rpb1, domain 2 family prot... 546 e-153 UniRef50_Q3SE62 DNA-directed RNA polymerase n=3 Tax=Paramecium t... 545 e-153 UniRef50_A1YIC5 DNA-directed RNA polymerase (Fragment) n=1 Tax=C... 544 e-152 UniRef50_Q4A7B0 DNA-directed RNA polymerase subunit beta' n=5 Ta... 542 e-152 UniRef50_UPI000179161A PREDICTED: similar to DNA-directed RNA po... 536 e-150 UniRef50_B7T2U0 DNA-directed RNA polymerase n=68 Tax=Magnoliophy... 532 e-149 UniRef50_P23581 DNA-directed RNA polymerase subunit beta'' n=2 T... 530 e-148 UniRef50_P08968 DNA-directed RNA polymerase III subunit RPC1 n=8... 526 e-147 UniRef50_C6HPI8 DNA-directed RNA polymerase n=1 Tax=Ajellomyces ... 524 e-146 UniRef50_A7J587 DNA-directed RNA polymerase (Fragment) n=10 Tax=... 518 e-145 UniRef50_Q86H36 DNA-directed RNA polymerase I subunit rpa1 n=1 T... 516 e-144 UniRef50_Q6C1S4 DNA-directed RNA polymerase n=2 Tax=Saccharomyce... 511 e-143 UniRef50_Q22M85 DNA-directed RNA polymerase n=1 Tax=Tetrahymena ... 511 e-143 UniRef50_Q9BHM2 DNA-directed RNA polymerase (Fragment) n=6 Tax=P... 510 e-142 UniRef50_A9UY22 DNA-directed RNA polymerase (Fragment) n=1 Tax=M... 508 e-142 UniRef50_P22705 DNA-directed RNA polymerase subunit beta' n=8 Ta... 505 e-141 UniRef50_A9BK83 DNA-directed RNA polymerase n=1 Tax=Cryptophyta ... 502 e-140 UniRef50_Q2GP10 DNA-directed RNA polymerase n=1 Tax=Chaetomium g... 499 e-139 UniRef50_Q110H3 DNA-directed RNA polymerase subunit beta' n=5 Ta... 496 e-138 UniRef50_Q98RN1 DNA-directed RNA polymerase n=1 Tax=Guillardia t... 494 e-137 UniRef50_A5K7T9 DNA-directed RNA polymerase n=1 Tax=Plasmodium v... 493 e-137 UniRef50_Q3LWE3 DNA-directed RNA polymerase n=1 Tax=Bigelowiella... 493 e-137 UniRef50_Q4A369 DNA-directed RNA polymerase n=2 Tax=dsDNA viruse... 492 e-137 UniRef50_Q8LLJ6 DNA-directed RNA polymerase (Fragment) n=1 Tax=O... 492 e-137 UniRef50_P15398 DNA-directed RNA polymerase I subunit rpa1 n=2 T... 491 e-136 UniRef50_C1EFA8 DNA-directed RNA polymerase (Fragment) n=2 Tax=M... 490 e-136 UniRef50_Q7T6X5 DNA-directed RNA polymerase subunit 1 n=1 Tax=Ac... 489 e-136 UniRef50_Q9SVY0 DNA-directed RNA polymerase n=2 Tax=rosids RepID... 486 e-135 UniRef50_P10964 DNA-directed RNA polymerase I subunit RPA1 n=24 ... 483 e-134 UniRef50_A4SAV6 DNA-directed RNA polymerase n=2 Tax=Ostreococcus... 483 e-134 UniRef50_B5VU95 DNA-directed RNA polymerase n=3 Tax=Cyanobacteri... 482 e-134 UniRef50_P23580 DNA-directed RNA polymerase subunit beta' n=2 Ta... 482 e-134 UniRef50_Q5KIF6 DNA-directed RNA polymerase n=5 Tax=Dikarya RepI... 477 e-132 UniRef50_Q9MUS7 DNA-directed RNA polymerase subunit beta'' n=2 T... 475 e-132 UniRef50_B0CXW7 DNA-directed RNA polymerase n=1 Tax=Laccaria bic... 474 e-131 UniRef50_Q0U0A2 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeri... 471 e-131 UniRef50_D1I9R9 DNA-directed RNA polymerase (Fragment) n=2 Tax=V... 469 e-130 UniRef50_B2VT60 DNA-directed RNA polymerase n=7 Tax=Leotiomyceta... 466 e-129 UniRef50_Q0D0E1 DNA-directed RNA polymerase n=23 Tax=Leotiomycet... 466 e-129 UniRef50_B0XG16 DNA-directed RNA polymerase n=3 Tax=Diptera RepI... 462 e-128 UniRef50_O78483 DNA-directed RNA polymerase subunit beta'' n=2 T... 460 e-127 UniRef50_A2C6T1 DNA-directed RNA polymerase subunit beta' n=46 T... 458 e-127 UniRef50_UPI0001924CE1 PREDICTED: similar to DNA-directed RNA po... 458 e-126 UniRef50_A5BD07 DNA-directed RNA polymerase n=1 Tax=Vitis vinife... 457 e-126 UniRef50_D0MYP8 DNA-directed RNA polymerase n=1 Tax=Phytophthora... 456 e-126 UniRef50_A8J568 DNA-directed RNA polymerase (Fragment) n=1 Tax=C... 456 e-126 UniRef50_A6NYC6 DNA-directed RNA polymerase n=1 Tax=Bacteroides ... 455 e-126 UniRef50_B3S2I6 DNA-directed RNA polymerase n=1 Tax=Trichoplax a... 455 e-126 UniRef50_A5DCV3 DNA-directed RNA polymerase II subunit RPB1 (Fra... 453 e-125 UniRef50_Q4PB85 DNA-directed RNA polymerase n=3 Tax=Basidiomycot... 453 e-125 UniRef50_Q19VA0 DNA-directed RNA polymerase subunit beta'' n=2 T... 452 e-125 UniRef50_A0DJB3 DNA-directed RNA polymerase n=1 Tax=Paramecium t... 450 e-124 UniRef50_B8M0T3 DNA-directed RNA polymerase n=3 Tax=Eurotiomycet... 448 e-124 UniRef50_O95602 DNA-directed RNA polymerase I subunit RPA1 n=40 ... 448 e-123 UniRef50_D2A5Z9 DNA-directed RNA polymerase n=1 Tax=Tribolium ca... 447 e-123 UniRef50_B9ZVN9 DNA-directed RNA polymerase n=24 Tax=Eumetazoa R... 446 e-123 UniRef50_P48120 DNA-directed RNA polymerase subunit beta'' n=1 T... 446 e-123 UniRef50_P49467 DNA-directed RNA polymerase subunit beta' n=4 Ta... 445 e-123 UniRef50_Q83066 DNA-directed RNA polymerase n=3 Tax=Lymphocystiv... 443 e-122 UniRef50_A8QBY2 DNA-directed RNA polymerase n=1 Tax=Malassezia g... 442 e-122 UniRef50_P91875 DNA-directed RNA polymerase I subunit RPA1 n=11 ... 441 e-122 UniRef50_C4M3E6 DNA-directed RNA polymerase n=2 Tax=Entamoeba Re... 441 e-122 UniRef50_B7S4C1 DNA-directed RNA polymerase n=2 Tax=Bacillarioph... 441 e-122 UniRef50_Q9TL04 DNA-directed RNA polymerase subunit beta'' n=1 T... 439 e-121 UniRef50_Q6B8R6 DNA-directed RNA polymerase subunit beta'' n=3 T... 439 e-121 UniRef50_D2VD58 DNA-directed RNA polymerase subunit A n=1 Tax=Na... 438 e-121 UniRef50_UPI0001926746 PREDICTED: similar to polymerase (RNA) I ... 437 e-120 UniRef50_Q6E6G2 DNA-directed RNA polymerase (Fragment) n=1 Tax=A... 436 e-120 UniRef50_Q1ACN4 DNA-directed RNA polymerase subunit beta'' n=1 T... 435 e-120 UniRef50_B2X2C1 DNA-directed RNA polymerase n=1 Tax=Chlamydomona... 435 e-120 UniRef50_A2T322 DNA-directed RNA polymerase subunit beta'' n=3 T... 432 e-119 UniRef50_P60290 DNA-directed RNA polymerase subunit beta'' n=2 T... 432 e-119 UniRef50_UPI000186D8C3 DNA-directed RNA polymerase I largest sub... 432 e-119 UniRef50_P14248 DNA-directed RNA polymerase II subunit RPB1 n=48... 431 e-119 UniRef50_P60289 DNA-directed RNA polymerase subunit beta'' n=22 ... 431 e-119 UniRef50_Q20EX3 DNA-directed RNA polymerase subunit beta'' n=1 T... 431 e-119 UniRef50_P06274 DNA-directed RNA polymerase subunit beta'' n=9 T... 429 e-118 UniRef50_C4Q0S7 DNA-directed RNA polymerase n=1 Tax=Schistosoma ... 429 e-118 UniRef50_B9VH97 DNA-directed RNA polymerase n=1 Tax=Syntrichia r... 428 e-118 UniRef50_B7P2L8 DNA-directed RNA polymerase (Fragment) n=1 Tax=I... 428 e-118 UniRef50_P41606 DNA-directed RNA polymerase subunit beta'' n=45 ... 427 e-117 UniRef50_A2GJD3 DNA-directed RNA polymerase (Fragment) n=3 Tax=T... 427 e-117 UniRef50_C7BEK6 DNA-directed RNA polymerase n=1 Tax=Pedinomonas ... 427 e-117 UniRef50_Q5YF58 DNA-directed RNA polymerase n=6 Tax=Iridoviridae... 427 e-117 UniRef50_P56764 DNA-directed RNA polymerase subunit beta'' n=192... 426 e-117 Sequences not found previously or not previously below threshold: >UniRef50_A4SHV0 DNA-directed RNA polymerase subunit beta' n=23 Tax=Proteobacteria RepID=RPOC_AERS4 Length = 1434 Score = 1830 bits (4741), Expect = 0.0, Method: Composition-based stats. Identities = 1168/1435 (81%), Positives = 1277/1435 (88%), Gaps = 29/1435 (2%) Query: 1 MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60 MKDLLKFLKAQTKTEEFD+IKI LASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR Sbjct: 1 MKDLLKFLKAQTKTEEFDSIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60 Query: 61 IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120 IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL Sbjct: 61 IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120 Query: 121 PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKM 180 PSRIGLLLDM LRDIERVLYFESYVVIE GMTNLER Q+L+EE YLDALEE+GDEFDAKM Sbjct: 121 PSRIGLLLDMTLRDIERVLYFESYVVIEPGMTNLERSQMLSEENYLDALEEWGDEFDAKM 180 Query: 181 GAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT 240 GAEAI ALL+++DLE E + +REEL++TNSETKRKK TKR+KL+EAF+QSGNKPEWMI+T Sbjct: 181 GAEAILALLRAIDLEGEVKTMREELDQTNSETKRKKTTKRLKLMEAFLQSGNKPEWMIMT 240 Query: 241 VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ 300 VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ Sbjct: 241 VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ 300 Query: 301 EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360 E+VDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP Sbjct: 301 ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT 360 Query: 361 LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP 420 LRLHQCGLPKKMALELFKPFIYGKLE RGLATTIKAAKKMVEREEAVVWDILDEVIREHP Sbjct: 361 LRLHQCGLPKKMALELFKPFIYGKLESRGLATTIKAAKKMVEREEAVVWDILDEVIREHP 420 Query: 421 VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480 VLLNRAPTLHRLGIQAFEP LIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA Sbjct: 421 VLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480 Query: 481 RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSG 540 RALMMSTNNILSPA+GEPIIVPSQDVVLGLYYMTR +NAKGEGMVL GPKEAE++YR+G Sbjct: 481 RALMMSTNNILSPASGEPIIVPSQDVVLGLYYMTRARINAKGEGMVLAGPKEAEKVYRAG 540 Query: 541 LASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIV-------- 592 LA LHARVKVRITEY + A+ LV +T LK+TTVGRAIL +I+PKG+ Y+++ Sbjct: 541 LADLHARVKVRITEYLRQADDSLVERTELKNTTVGRAILSLILPKGMEYALIDEPKVLTA 600 Query: 593 ------------------NQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAAR 634 N+ALGKK IS++LNTCYR GLK TVIFADQ+MYTGF YAA Sbjct: 601 AEQADLDANPQNWIKSVSNKALGKKLISRLLNTCYRKQGLKDTVIFADQLMYTGFHYAAL 660 Query: 635 SGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVS 694 SGASVGIDDMVIP+ K +II+ AEAEVAEIQ+QF SGLVTAGERYNKVIDIWA+AN+RVS Sbjct: 661 SGASVGIDDMVIPDAKKDIIAAAEAEVAEIQDQFLSGLVTAGERYNKVIDIWASANERVS 720 Query: 695 KAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSI 754 KAMM+NL E +N G+EE+Q SFNSI+MMADSGARGSAAQIRQLAGMRGLMAKPDGSI Sbjct: 721 KAMMENLSKERDVNSLGEEEEQASFNSIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSI 780 Query: 755 IETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDC 814 IETPI ANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQD+V+TEDDC Sbjct: 781 IETPIVANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDMVITEDDC 840 Query: 815 GTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGT-ADILVPRNTLLHEQWCDLLE 873 GT EG+ MTP+IEGGDV EPLR+RVLGRV A+DV+KPGT +ILV RNTLL EQ CDLLE Sbjct: 841 GTVEGLWMTPLIEGGDVVEPLRERVLGRVVADDVIKPGTEDEILVARNTLLDEQLCDLLE 900 Query: 874 ENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMR 933 NSVD VKVRS ++C+TDFG CAHCYGRDLARGH++NKGEA+GVIAAQSIGEPGTQLTMR Sbjct: 901 RNSVDRVKVRSAITCETDFGNCAHCYGRDLARGHLVNKGEAVGVIAAQSIGEPGTQLTMR 960 Query: 934 TFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKE 993 TFHIGGAASRAAAESSIQVKN GSIKL N K V NS KLVITSR+TEL ++D+ GRTKE Sbjct: 961 TFHIGGAASRAAAESSIQVKNTGSIKLQNAKFVHNSDDKLVITSRSTELTIMDDMGRTKE 1020 Query: 994 SYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDEL 1053 S+K+PYG+VL DG+ V+ G+TVANWDPHT P+ITEV+G ++F MIDG TITRQTDEL Sbjct: 1021 SHKLPYGSVLEVKDGQAVSAGDTVANWDPHTHPIITEVAGRLQFEHMIDGVTITRQTDEL 1080 Query: 1054 TGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGV 1113 TGLSS+VVLD ER + GK++RP +K+VD G DV+IPGTD+ AQYFLPGKAIV LEDG Sbjct: 1081 TGLSSIVVLDVNERPSAGKEMRPTVKLVDQNGKDVMIPGTDVAAQYFLPGKAIVNLEDGA 1140 Query: 1114 QISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKR 1173 + GD +ARIPQES GTKDITGGLPRVADLFEAR+PKEPAILAEISG +SFGKETKGKR Sbjct: 1141 NVGVGDAVARIPQESSGTKDITGGLPRVADLFEARQPKEPAILAEISGTISFGKETKGKR 1200 Query: 1174 RLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYI 1233 RLVITP DG D YEEMIPKWR LNVFEGE+VE+G+V++DGPE+ HDILRLRG+ V YI Sbjct: 1201 RLVITPTDGGDVYEEMIPKWRNLNVFEGEKVEKGEVLADGPESAHDILRLRGISPVANYI 1260 Query: 1234 VNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELE 1293 NEVQDVYRLQGVKINDKHIEVIVRQMLRK I++AG +D +EGEQVE +RVKIANR+L Sbjct: 1261 ANEVQDVYRLQGVKINDKHIEVIVRQMLRKCEILSAGDTDLIEGEQVEVARVKIANRKLV 1320 Query: 1294 ANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIV 1353 A GK AT+ L+GITKASL+TESFISAASFQETTRVLTEAAV GKRDELRGLKENVIV Sbjct: 1321 AEGKTPATFRHILMGITKASLSTESFISAASFQETTRVLTEAAVGGKRDELRGLKENVIV 1380 Query: 1354 GRLIPAGTGYAYHQDRMRRRAAGEAP-AAPQVTAEDASASLAELLNAGLGGSDNE 1407 GRLIPAGTG+AYH R+ +RAA PQVTA++A +LA+LLNA G D E Sbjct: 1381 GRLIPAGTGFAYHHARINQRAAAARAVGVPQVTADEAQQNLADLLNAS-GSFDEE 1434 >UniRef50_Q492C0 DNA-directed RNA polymerase subunit beta' n=74 Tax=Bacteria RepID=RPOC_BLOPB Length = 1416 Score = 1821 bits (4716), Expect = 0.0, Method: Composition-based stats. Identities = 1161/1412 (82%), Positives = 1285/1412 (91%), Gaps = 13/1412 (0%) Query: 1 MKDLLKFLKAQ-TKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCA 59 MKDLL+F K Q T+ EEF+AIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCA Sbjct: 1 MKDLLRFFKIQHTQIEEFNAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCA 60 Query: 60 RIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKS 119 RIFGP+KDYECLCGKYKRLKHRGV+CEKCGVEVTQ+KVRRERMGHIELASPTAHIWFLKS Sbjct: 61 RIFGPIKDYECLCGKYKRLKHRGVVCEKCGVEVTQSKVRRERMGHIELASPTAHIWFLKS 120 Query: 120 LPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAK 179 LPSRIGLLLDMPLRDIERVLYFESYVV+E GMT+LE +Q+LTEE+YLDALEEFGDEF+AK Sbjct: 121 LPSRIGLLLDMPLRDIERVLYFESYVVVESGMTSLECRQVLTEEEYLDALEEFGDEFEAK 180 Query: 180 MGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMIL 239 MGAEAIQ LL++ +L+ ECE LRE L +++SETKRKK+TKRIKL+EAF+ S NKPEWM+L Sbjct: 181 MGAEAIQILLRNTNLKNECEYLREILEDSHSETKRKKITKRIKLIEAFIYSENKPEWMVL 240 Query: 240 TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRML 299 VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAP+IIVRNEKRML Sbjct: 241 NVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPEIIVRNEKRML 300 Query: 300 QEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP 359 QEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP Sbjct: 301 QEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP 360 Query: 360 YLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREH 419 YL+LHQCGLPKKMALELFKPFIYGKLEL+G A+TIKAAKKMV+REEAVVWDILD VIREH Sbjct: 361 YLKLHQCGLPKKMALELFKPFIYGKLELQGFASTIKAAKKMVDREEAVVWDILDNVIREH 420 Query: 420 PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLE 479 PV+LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLE Sbjct: 421 PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLE 480 Query: 480 ARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRS 539 ARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTR+ NAKGEGMVLTGPKEAE LYR Sbjct: 481 ARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRERSNAKGEGMVLTGPKEAECLYRL 540 Query: 540 GLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKK 599 GLA LHAR+K+RITEYE D NGE KT+L ++T+GR+ILWMIVPKGLP+ +VNQ LGKK Sbjct: 541 GLADLHARIKIRITEYEYDKNGEWSKKTNLVNSTIGRSILWMIVPKGLPFILVNQVLGKK 600 Query: 600 AISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEA 659 AIS MLN CYR+LG+K TVI ADQIMYTGFAYAARSGASVGIDDM+IP KK +II EAE+ Sbjct: 601 AISTMLNNCYRLLGMKATVILADQIMYTGFAYAARSGASVGIDDMMIPSKKADIIDEAES 660 Query: 660 EVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSF 719 EV EIQEQFQ+GLVTAGERYNKVIDIWAAAN+RV++AMMDNL TETV+NR+GQ E Q SF Sbjct: 661 EVVEIQEQFQTGLVTAGERYNKVIDIWAAANERVAQAMMDNLATETVMNRNGQLENQASF 720 Query: 720 NSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA 779 N+I+MMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA Sbjct: 721 NNIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA 780 Query: 780 RKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRV 839 RKGLADTALKTANSGYLTRRLVDVAQDLV+T+DDC T GI+M+PVIEGGDVKEPLR+RV Sbjct: 781 RKGLADTALKTANSGYLTRRLVDVAQDLVITQDDCDTFSGIVMSPVIEGGDVKEPLRERV 840 Query: 840 LGRVTAEDVLKPG---TADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCA 896 LGRV AED+L+ + +L+ RNTLL E WCD+L+E+S+D VKVRSVV+CDTDFGVC+ Sbjct: 841 LGRVLAEDILESNADTDSKVLIVRNTLLDEYWCDVLDEHSIDTVKVRSVVTCDTDFGVCS 900 Query: 897 HCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKG 956 CYGRDLARG I+NKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASR+A ESSIQ+KN G Sbjct: 901 KCYGRDLARGQIVNKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRSALESSIQIKNTG 960 Query: 957 SIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGET 1016 ++ L N+KSV+N GKLV+ SRNTELK+ID+F RTKESYKVPYGAV+ K + E+V GE Sbjct: 961 TVCLKNIKSVINGEGKLVVISRNTELKIIDQFSRTKESYKVPYGAVITKKNEEKVIHGEI 1020 Query: 1017 VANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRP 1076 VA WDPHTMPVI EVSGF++F D+IDGQ+I +QTDELTGL+S+VVLD++ER + KDLRP Sbjct: 1021 VAYWDPHTMPVIAEVSGFIQFIDLIDGQSIVKQTDELTGLTSIVVLDTSERVSSAKDLRP 1080 Query: 1077 ALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITG 1136 LKIVD G D+ IPGTD+P QYFLPG+++VQL DG +I GD LAR+P ES GTKDITG Sbjct: 1081 TLKIVDINGYDIFIPGTDVPVQYFLPGRSVVQLVDGSRIICGDILARLPHESSGTKDITG 1140 Query: 1137 GLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQL 1196 GLPRVADLFEARRPKE AILAEISG +SFGKETKGKRRL+I+P++ D YEEMIPKWR L Sbjct: 1141 GLPRVADLFEARRPKESAILAEISGTISFGKETKGKRRLMISPIEDGDVYEEMIPKWRHL 1200 Query: 1197 NVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVI 1256 NVFEGE V+RGD+ISDGPE+PHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVI Sbjct: 1201 NVFEGEYVDRGDIISDGPESPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVI 1260 Query: 1257 VRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLAT 1316 VRQMLRKAT++ +GSSDFL GEQVEYSR+KIANR+LE GKV ++ R+LLGITKASLAT Sbjct: 1261 VRQMLRKATVIRSGSSDFLVGEQVEYSRIKIANRKLENEGKVKISFIRNLLGITKASLAT 1320 Query: 1317 ESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAG 1376 ESFISAASFQETTRVLTE++VAGKRDELRGLKENVIVGRLIPAGTGY+YHQ+R+ R Sbjct: 1321 ESFISAASFQETTRVLTESSVAGKRDELRGLKENVIVGRLIPAGTGYSYHQERVHHRHFS 1380 Query: 1377 EAPA---------APQVTAEDASASLAELLNA 1399 + Q+TA++ASA+L ELLNA Sbjct: 1381 NKKETEKSVITNISSQITADEASANLTELLNA 1412 >UniRef50_A1ALT5 DNA-directed RNA polymerase subunit beta' n=2 Tax=Bacteria RepID=RPOC_PELPD Length = 1409 Score = 1684 bits (4362), Expect = 0.0, Method: Composition-based stats. Identities = 843/1416 (59%), Positives = 1059/1416 (74%), Gaps = 39/1416 (2%) Query: 1 MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60 M+D F F AI+I+++SP+ IR S GEVKKPETINYRTFKPERDGLFCA+ Sbjct: 1 MEDYFSFFDKPKDPLHFSAIRISVSSPEKIRERSHGEVKKPETINYRTFKPERDGLFCAK 60 Query: 61 IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120 IFGP KDYEC CGKYKR+KHRG+ICEKCGVEV +KVRRER+GHI+LA+P AHIWFLKSL Sbjct: 61 IFGPTKDYECNCGKYKRMKHRGIICEKCGVEVIPSKVRRERLGHIDLATPVAHIWFLKSL 120 Query: 121 PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFG-DEFDAK 179 PSRIG LLD+ L+D+E+VLYFE++V+ + + L+ ++++E+++L A +E+G D F Sbjct: 121 PSRIGNLLDITLKDLEKVLYFEAFVISDPKNSPLQFCEVMSEDKFLKAQQEYGYDAFSGG 180 Query: 180 MGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMIL 239 MGAEAI+ LK++DL++ QLR E+ E+ SE KRKK KR+K+LEAF SGNKPEWMIL Sbjct: 181 MGAEAIRECLKAIDLDELSGQLRTEMMESTSEAKRKKTAKRLKVLEAFKSSGNKPEWMIL 240 Query: 240 TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRML 299 +PVLPP+LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL++L AP++I+RNEKRML Sbjct: 241 ECIPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLVELQAPEVIIRNEKRML 300 Query: 300 QEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP 359 QEAVDAL DNGRRGRAI G NKRPLKSL+DM+KGK GRFRQNLLGKRVDYSGRSVI VGP Sbjct: 301 QEAVDALFDNGRRGRAIAGPNKRPLKSLSDMLKGKSGRFRQNLLGKRVDYSGRSVIVVGP 360 Query: 360 YLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREH 419 L+LHQCGLPKKMALELFKPFIY KLE RG TTIK+AKKMVE+E VWD+L+EVIREH Sbjct: 361 ELKLHQCGLPKKMALELFKPFIYNKLEERGYVTTIKSAKKMVEKERPEVWDVLEEVIREH 420 Query: 420 PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLE 479 PV+LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVC A+NADFDGDQMAVH+PL++E+Q+E Sbjct: 421 PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHLPLSVESQVE 480 Query: 480 ARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNA------------------- 520 AR LMMSTNNILSPA+G+PIIVPSQD+VLG YYMTRD Sbjct: 481 ARVLMMSTNNILSPAHGKPIIVPSQDMVLGAYYMTRDRRFERVIDETTGKEKIDAESGLP 540 Query: 521 -----KGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVG 575 KG G V +GP E + +G + A VKVR+ D +++ DTTVG Sbjct: 541 IYRKVKGTGKVFSGPDEVRIAFDAGEVDMQATVKVRMKNLVSDEKPQMI------DTTVG 594 Query: 576 RAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARS 635 R IL I+P +P+S VN+ + KK +S +++TCYR+ K TVI AD++ GF YA + Sbjct: 595 RVILKEILPDSVPFSAVNKVMNKKELSNLVDTCYRMADNKETVILADKLKDIGFRYANLA 654 Query: 636 GASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSK 695 G S+ +DDMVIPE K EI+++AE EV EIQ Q+ GL+T GERYNKVIDIWA A + ++K Sbjct: 655 GISICLDDMVIPEGKTEILTKAEDEVKEIQNQYTEGLITDGERYNKVIDIWAKATEDIAK 714 Query: 696 AMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSII 755 M+DNL E ++ SFN+I+MMADSGARGS QIRQLAGMRGLMAKP G II Sbjct: 715 EMLDNLSKEKFFVEGVGVSEEASFNAIHMMADSGARGSHQQIRQLAGMRGLMAKPSGEII 774 Query: 756 ETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCG 815 ETPITANFREGL VLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQD ++ E+DCG Sbjct: 775 ETPITANFREGLTVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDAIIAEEDCG 834 Query: 816 THEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEEN 875 T +G++++ + EGG+V E + DR+LGRV +D+L P T D+LV N + E +E+ Sbjct: 835 TLDGLVVSSLTEGGEVIEHIGDRILGRVALDDILDPITGDVLVAANEDIDENLVKRIEDA 894 Query: 876 SVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTF 935 ++ VK+RSV++C + G+C+ CYGRDLARGH +N GEA+GVIAAQSIGEPGTQLTMRTF Sbjct: 895 GLEKVKIRSVLTCQSRRGICSKCYGRDLARGHSVNMGEAVGVIAAQSIGEPGTQLTMRTF 954 Query: 936 HIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESY 995 HIGG ASR A ++S++ + G +K N+ +V+N+ G ++ +RN E+ ++DE GR +E Y Sbjct: 955 HIGGTASRRAEQTSLESRTDGILKFINLNTVINAEGHHIVMNRNGEIAVVDETGREREKY 1014 Query: 996 KVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTG 1055 V YGA + G V G +A WDP+TMP++TE SG V+F D+++G T+ Q DE+TG Sbjct: 1015 LVLYGAKIKIAPGGAVTQGGILAEWDPYTMPILTEFSGKVKFGDIVEGVTMEEQLDEVTG 1074 Query: 1056 LSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI 1115 LS V+++S + D RP + I G D T +YFLP A + ++D I Sbjct: 1075 LSRKVIIESKD-----SDKRPRIAI-KGMGGDSADAVTGTIGRYFLPVGANITVQDDSVI 1128 Query: 1116 SSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRL 1175 S+GD +A+IP+E+ TKDITGGLPRVA+LFEAR+PK+ A+++EI G VS+GK+ KGKR++ Sbjct: 1129 SAGDIIAKIPRETTKTKDITGGLPRVAELFEARKPKDFAVISEIDGRVSYGKDAKGKRKV 1188 Query: 1176 VITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVN 1235 ++TP G +P E +IPK + ++V EG+ V G+ + DG PHDILR+ GV + +Y+V+ Sbjct: 1189 IVTPEMG-EPKEYLIPKGKHISVHEGDHVRAGEPLMDGSSNPHDILRVLGVKELAKYLVD 1247 Query: 1236 EVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEAN 1295 EVQ+VYRLQGVKINDKHIEVIVRQMLR+ I + G + L +QVE + N+++ Sbjct: 1248 EVQEVYRLQGVKINDKHIEVIVRQMLRRVRIKDVGDTSLLVDDQVERWVFETENQKVMNE 1307 Query: 1296 GKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGR 1355 GK A LLGITKASL+TESFISAASFQETT+VLT+AA+ GK D LRGLKENVI+GR Sbjct: 1308 GKRPAIAEPLLLGITKASLSTESFISAASFQETTKVLTQAAIEGKVDYLRGLKENVIMGR 1367 Query: 1356 LIPAGTGYAYHQDRMRRRAAGEAPAAPQVTAEDASA 1391 LIPAGTG + +++ +R P A +ED Sbjct: 1368 LIPAGTGLSSYRN-IRMLTEASEPVAQAAESEDVPD 1402 >UniRef50_A0L5W7 DNA-directed RNA polymerase subunit beta' n=4 Tax=cellular organisms RepID=RPOC_MAGSM Length = 1412 Score = 1682 bits (4357), Expect = 0.0, Method: Composition-based stats. Identities = 837/1402 (59%), Positives = 1066/1402 (76%), Gaps = 25/1402 (1%) Query: 2 KDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARI 61 + + K + FD I+I++ASP+ IRSWSFGEVKKPETINYRTFKPERDGLFCA+I Sbjct: 20 QSVFKLFSRPMLGQSFDGIRISIASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAKI 79 Query: 62 FGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLP 121 FGPVKDYECLCGKYKRLKHRGV+CEKCGVEV Q+KVRRERMGHIELA+P AHIWFLKSLP Sbjct: 80 FGPVKDYECLCGKYKRLKHRGVVCEKCGVEVIQSKVRRERMGHIELAAPVAHIWFLKSLP 139 Query: 122 SRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMG 181 SRIGLLLDM L+D+ERVLYFE++VV+E GMT ++R ++LTE++Y +EEFGDEF A +G Sbjct: 140 SRIGLLLDMTLKDLERVLYFENFVVLESGMTPMKRGELLTEDRYYQLIEEFGDEFRAGIG 199 Query: 182 AEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTV 241 AEAI+ +L + + +E QLR+EL +T+SE +RKK+ KR+ LEAF S N PEWMIL V Sbjct: 200 AEAIREMLVDLKIPEEINQLRDELRDTSSEARRKKIVKRLHTLEAFQDSKNSPEWMILEV 259 Query: 242 LPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQE 301 +PV+PP+LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL +L APDII+RNEKRMLQE Sbjct: 260 IPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLFELKAPDIIIRNEKRMLQE 319 Query: 302 AVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYL 361 +VDAL DNGRRGR ITG+NKRPLKSL++M+KGKQGRFR NLLGKRVDYSGRSVI VGP L Sbjct: 320 SVDALFDNGRRGRVITGTNKRPLKSLSEMLKGKQGRFRLNLLGKRVDYSGRSVIVVGPEL 379 Query: 362 RLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPV 421 +LH+CGLPKKMALELFKPFIY +LE RGLATTIKAAK+MVE+E+ VWDIL+EVIREHPV Sbjct: 380 KLHECGLPKKMALELFKPFIYNRLEERGLATTIKAAKRMVEKEKGEVWDILEEVIREHPV 439 Query: 422 LLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEAR 481 +LNRAPTLHRLGIQAFEP L+EGKAIQLHPLVC A+NADFDGDQMAVHVPL++EAQ+EAR Sbjct: 440 MLNRAPTLHRLGIQAFEPKLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSIEAQIEAR 499 Query: 482 ALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGL 541 LMMSTNNILSPANG+PIIVP+QD++LGLYYMT + N GEGM+ + E ++ + +G+ Sbjct: 500 VLMMSTNNILSPANGKPIIVPTQDIILGLYYMTSERANVAGEGMIFSNTMEVKQAFDAGV 559 Query: 542 ASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAI 601 A+LHA ++ R TTVGR +L ++P+ + + +N+ + KK + Sbjct: 560 ANLHASIQCRFRG-------------KRVHTTVGRMLLADMLPERIDFQAINKLITKKEV 606 Query: 602 SKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEV 661 +K+++ YR+ G K TVIF D++M GFA+A R+G S G DDMVIPE K +++ A+ +V Sbjct: 607 TKLIDHTYRMCGTKDTVIFTDRLMAMGFAFACRAGISFGKDDMVIPEAKRKLVDAAQEKV 666 Query: 662 AEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNS 721 EI++Q+ GL+T GE+YNKV+DIW+ +RV+ MM + T+TV+N+DG+ +Q SFNS Sbjct: 667 KEIEKQYTDGLITEGEKYNKVVDIWSHCTERVADEMMGTISTDTVLNKDGEMVEQPSFNS 726 Query: 722 IYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARK 781 I+MMA+SGARGSAAQ+RQLAGMRGLMAKP G I+ETPITANFREGL VLQYFISTHGARK Sbjct: 727 IFMMANSGARGSAAQMRQLAGMRGLMAKPSGEIMETPITANFREGLTVLQYFISTHGARK 786 Query: 782 GLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLG 841 GLADTALKTANSGYLTRRLVDVAQD +V E+DCGT GI + ++EG DV E L DR+LG Sbjct: 787 GLADTALKTANSGYLTRRLVDVAQDCIVREEDCGTSIGITVAALVEGNDVVETLGDRLLG 846 Query: 842 RVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGR 901 R D+ P T ++LV T++ E + +E ++VD+V +RS ++C+T GVC CYGR Sbjct: 847 RTPVSDIKDPITDELLVKAGTIMDEDIVEKIENSNVDSVLIRSPLTCETTRGVCVTCYGR 906 Query: 902 DLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLS 961 DLARG + GEA+GVIAAQSIGEPGTQLTMRTFHIGG ASR A +S + + G +K Sbjct: 907 DLARGTRVTVGEAVGVIAAQSIGEPGTQLTMRTFHIGGTASRQAEQSHQETTHGGVLKFH 966 Query: 962 NVKSVVNSSGKLVITSRNTELKLID--------EFGRTKESYKVPYGAVLAKGDGEQVAG 1013 ++ +V + +G+ V+ SRN+E+ L + E GR +E Y++PYGA ++ G V Sbjct: 967 DLITVQDRAGRYVVLSRNSEVSLHEAVEHEGQVEAGRERERYRIPYGARISSAPGSVVEK 1026 Query: 1014 GETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKD 1073 G T A WDP MP+ITEV G V+F D++DG ++ D+ TGL S V + +++ D Sbjct: 1027 GTTFAEWDPFAMPIITEVEGIVKFGDLVDGVSLRENMDDTTGLISKEVTEWKGQSSKKGD 1086 Query: 1074 LRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKD 1133 +RP + + D N+ L+ +Y+LP A++ + +G + GD +A++ ++S +D Sbjct: 1087 MRPRITLKDVNSNETLMMPNGSECRYYLPVGAVIVVNEGDHVHGGDIIAKVLRQSTKNRD 1146 Query: 1134 ITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKW 1193 ITGGLPRV +LFEAR+PKE + +AE G+V++GK+ KGKRRLV+TP D +P E ++PK Sbjct: 1147 ITGGLPRVVELFEARKPKEHSFIAENEGMVTYGKDLKGKRRLVVTP-DSGEPMEYLLPKG 1205 Query: 1194 RQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHI 1253 +QL V EG+ V +G+ + +G P DIL++ G+ + R++VNE+Q+VYRLQGV+INDKHI Sbjct: 1206 KQLAVNEGDWVRKGEPLMEGSPVPQDILKVLGLEELCRFMVNEIQEVYRLQGVRINDKHI 1265 Query: 1254 EVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKAS 1313 EVIVRQML+K I + G + F+ GEQVE + N + + G AT + LLGITKAS Sbjct: 1266 EVIVRQMLQKVQITDPGDTMFVSGEQVEKDDYLLENVKTDKRGGRVATCTPLLLGITKAS 1325 Query: 1314 LATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRM--- 1370 L+T SFISAASFQETTRVLTEAA++G+ D L GLKENVIVGRLIPAGTG Q + Sbjct: 1326 LSTPSFISAASFQETTRVLTEAAISGRVDTLNGLKENVIVGRLIPAGTGNILSQLKKMGS 1385 Query: 1371 RRRAAGEAPAAPQVTAEDASAS 1392 + Q A+ AS+S Sbjct: 1386 LTKGEKSTQGGEQHVAKVASSS 1407 >UniRef50_Q2N5Q5 DNA-directed RNA polymerase subunit beta' n=126 Tax=Bacteria RepID=RPOC_ERYLH Length = 1438 Score = 1621 bits (4198), Expect = 0.0, Method: Composition-based stats. Identities = 815/1394 (58%), Positives = 1029/1394 (73%), Gaps = 31/1394 (2%) Query: 1 MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60 M +L KF K E FD I+I +ASP+ IRSWSFGE+KKPETINYRTFKPERDGLFCAR Sbjct: 1 MNELTKFTNQLAKPETFDQIQIGIASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR 60 Query: 61 IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120 IFGPVKDYECLCGKYKR+K++GV+CEKCGVEVT TKVRRERMGHIELA+P AHIWFLKSL Sbjct: 61 IFGPVKDYECLCGKYKRMKYKGVVCEKCGVEVTVTKVRRERMGHIELAAPVAHIWFLKSL 120 Query: 121 PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFG-DEFDAK 179 PSRIGLLLDM L+ +ERVLYFE Y+V E G+T LE+ Q+LTE++ L+A +E+G D F A Sbjct: 121 PSRIGLLLDMQLKQLERVLYFEHYIVTEPGLTPLEKFQLLTEDELLEAQDEYGEDAFSAG 180 Query: 180 MGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMIL 239 +GAEA++ +L +DLEQE E L EEL T S+ K K+ KR+K++E+F++SGN+PEWMIL Sbjct: 181 IGAEAVKFMLMDLDLEQEKEDLLEELATTKSKLKPAKIIKRLKVVESFIESGNRPEWMIL 240 Query: 240 TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRML 299 V+PV+PP+LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL++L APDIIVRNEKRML Sbjct: 241 EVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRML 300 Query: 300 QEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP 359 QE+VDAL DNGRRGR ITG+NKRPLKSL+DM+KGKQGRFRQNLLGKRVDYSGRSVI GP Sbjct: 301 QESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP 360 Query: 360 YLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREH 419 L+LHQCGLPKKMALELFKPFIY +L+ +GL+ T+K AKK VE+E VWDILDEVIREH Sbjct: 361 ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH 420 Query: 420 PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLE 479 PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVC+A+NADFDGDQMAVHVPL+LEAQLE Sbjct: 421 PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE 480 Query: 480 ARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMV------------L 527 AR LMMSTNNILSPANG+PIIVPSQD+VLGLYY++ + E + Sbjct: 481 ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSMERQEKTPEYIEEKDGTKIEKLPRF 540 Query: 528 TGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKG- 586 E + + +LH R+ R+ + ++D E+ TT GR ++ +PK Sbjct: 541 ADMAEVHQALETKSVTLHTRIIARVPQADEDGKPEMKRFV----TTPGRMLIGECLPKNH 596 Query: 587 -LPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMV 645 +PY IVN+ L KK I +++ YR G K TV+FAD IM GF +A ++G S G DDM+ Sbjct: 597 KVPYDIVNRLLTKKEIGDVIDQVYRHTGQKDTVLFADAIMVLGFRHAFKAGISFGKDDMI 656 Query: 646 IPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTET 705 IP+ K +I + + +VA+ ++Q+Q GL+T E+YNKVID W+ D+V++AMMD ++++ Sbjct: 657 IPDSKEGMIEDTKKQVADYEQQYQDGLITQQEKYNKVIDAWSRCGDQVAEAMMDEIKSQK 716 Query: 706 VINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFRE 765 + K+ NSIYMM+ SGARGS AQ++QLAGMRGLMAKP G IIE PI +NF+E Sbjct: 717 FDK----DGKESEINSIYMMSHSGARGSPAQMKQLAGMRGLMAKPSGEIIENPIISNFKE 772 Query: 766 GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPV 825 GL VL+YF STHGARKGLADTALKTANSGYLTRRLVDV+QD V+ E+DC T + M + Sbjct: 773 GLTVLEYFNSTHGARKGLADTALKTANSGYLTRRLVDVSQDCVIVEEDCKTDNALEMRAI 832 Query: 826 IEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSV 885 ++GG V L +R+LGR +D++ T +++V TLL E +EE V ++RS Sbjct: 833 VQGGSVIASLGERILGRTLVDDLVNAKTDEVIVKAGTLLDEPMVKAIEEAEVQVARIRSP 892 Query: 886 VSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAA 945 + C+ D GVCA CYGRDLARG +N GEA+GVIAAQSIGEPGTQLTMRTFHIGGAA Sbjct: 893 LVCEADQGVCATCYGRDLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLN- 951 Query: 946 AESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAK 1005 S ++ + G ++ ++ ++ + G+++ +RN EL +ID GR +E +KVPYG VL Sbjct: 952 ETSHLESISDGKVEYRDMPTITDKKGRILSLARNGELAVIDAEGREREIHKVPYGTVLMH 1011 Query: 1006 GDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSA 1065 DG +V G+ +A WDP ++P+ITE SG V++ D+I+G T+ QTD+ TG++ VV ++ Sbjct: 1012 KDGAKVKEGDRLAEWDPFSLPIITEQSGVVKYQDLIEGTTLEEQTDDATGIAQRVVTENR 1071 Query: 1066 ERTAGGK-DLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARI 1124 K DLRP L ++ ++ +Y L + + DG + +GD LAR Sbjct: 1072 ATGRKKKEDLRPRLTLLSEGQSEDETEA----QRYLLAPGTTLSVTDGQTVEAGDILARA 1127 Query: 1125 PQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSD 1184 +E+ T+DITGGLPRVA+LFEAR PK+ A++A+ISG + F +E K KR++ I P +G + Sbjct: 1128 SREAAKTRDITGGLPRVAELFEARVPKDNAVIAKISGKIEFVREYKAKRKIAIVPEEG-E 1186 Query: 1185 PYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQ 1244 + +IPK + ++V EG+ V++GD + G PHDIL + GV A+ Y+ E+Q+VYRLQ Sbjct: 1187 AVDYLIPKTKVIDVQEGDFVKKGDTLISGSPNPHDILDVLGVEALAEYLCTEIQEVYRLQ 1246 Query: 1245 GVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSR 1304 GVKINDKHIEVIVRQML+K I + G + L GEQV+ + AN +L GK AT + Sbjct: 1247 GVKINDKHIEVIVRQMLQKVEITDGGDTVLLPGEQVDRDEMDEANAKL-GRGKKPATGNP 1305 Query: 1305 DLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 LLGITKASL T SFISAASFQETTRVLT+A+V GK+D L GLKENVIVGRLIPAGTG Sbjct: 1306 VLLGITKASLQTRSFISAASFQETTRVLTQASVEGKKDTLIGLKENVIVGRLIPAGTGAG 1365 Query: 1365 YHQDRMRRRAAGEA 1378 ++ R+ A A Sbjct: 1366 MNRMRVTASARDAA 1379 >UniRef50_B2UQY1 DNA-directed RNA polymerase subunit beta' n=5 Tax=Verrucomicrobia RepID=RPOC_AKKM8 Length = 1398 Score = 1564 bits (4049), Expect = 0.0, Method: Composition-based stats. Identities = 718/1409 (50%), Positives = 969/1409 (68%), Gaps = 37/1409 (2%) Query: 11 QTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYEC 70 K FD + I +A PD IRSWSFGEV PETINYRTFKPE+ GLFC RIFGP +D EC Sbjct: 14 SDKPRTFDQVAITVADPDTIRSWSFGEVVNPETINYRTFKPEKGGLFCERIFGPTRDMEC 73 Query: 71 LCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDM 130 CGKYKR+KH+G+ C++CGVEVT +VRRERMGHIELA P +HIWF K +PSRIGL+LDM Sbjct: 74 ACGKYKRIKHKGITCDRCGVEVTNARVRRERMGHIELAVPVSHIWFYKCMPSRIGLMLDM 133 Query: 131 PLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFG-DEFDAKMGAEAIQALL 189 R +ERV+Y+E Y+V++ G T LE+ ILTEE++ +A +E+G D F+A MGAEAIQ +L Sbjct: 134 TARHLERVIYYEDYIVVDPGSTPLEKGAILTEEEFRNAEDEYGYDSFEAGMGAEAIQKML 193 Query: 190 KSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDL 249 ++DL L+E+L+ TNS+ ++K+ KR+KL + F+QS +PEWMIL VLPV+PPDL Sbjct: 194 AAIDLPTLVADLQEQLDNTNSKQNKRKIAKRLKLAQGFLQSNTRPEWMILNVLPVIPPDL 253 Query: 250 RPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDN 309 RPLVPL+GGRFATSDLNDLYRRVINRNNRLK LL L P++I+RNEKRMLQEAVDAL DN Sbjct: 254 RPLVPLEGGRFATSDLNDLYRRVINRNNRLKTLLSLKTPEVIIRNEKRMLQEAVDALFDN 313 Query: 310 GRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLP 369 GR GRA+TG+ RPLKSL+DM+KGK GRFRQNLLGKRVDYSGRSVI +GP L+L+QCGLP Sbjct: 314 GRHGRAVTGAGNRPLKSLSDMLKGKGGRFRQNLLGKRVDYSGRSVIVIGPELKLNQCGLP 373 Query: 370 KKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTL 429 KKMAL LF+PFI +L+ G T+++AKK+++R+ VWDIL+EV + HPV+LNRAPTL Sbjct: 374 KKMALILFEPFIIHRLKELGYVHTVRSAKKLIDRKTPEVWDILEEVTKGHPVMLNRAPTL 433 Query: 430 HRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNN 489 HRL IQAFEPVLIEG AI+LHPLVC AYNADFDGDQMAVHVPL++EAQ+EAR LM++ NN Sbjct: 434 HRLSIQAFEPVLIEGSAIRLHPLVCNAYNADFDGDQMAVHVPLSVEAQMEARQLMLAPNN 493 Query: 490 ILSPANGEPIIVPSQDVVLGLYYMT-------RDCVNAKGEGMVLTGPKEAERLYRSGLA 542 I SPA+G+PI P+QD++LG Y++T ++ + + E E + Sbjct: 494 IFSPASGKPIATPTQDIILGAYFLTHTRAAEVQNNQDNHHHLPLFESIDEVEYAIAARKI 553 Query: 543 SLHARVKVRITEYEKDANGELVAKTSLKD--TTVGRAILWMIVPKGLPYSIVNQALGKKA 600 H +++ +Y K + + + K TT GR I P+ L +N+ +GKK Sbjct: 554 GYHDWIRLHNPDYGKKPSEVVYGDVTKKVIITTAGRVRFNEIWPREL--GYINRNVGKKQ 611 Query: 601 ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAE 660 + ++ CY+ +G + TV D + GF A RSG S+GI DMV+P +K I +A AE Sbjct: 612 MGDIIWRCYQTVGKERTVQTLDALKNLGFKEATRSGCSIGIVDMVVPSQKKTEIEKAYAE 671 Query: 661 VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFN 720 + ++ Q+++G++T GERY KV+DIW D + A+ L+ + Sbjct: 672 LDKVTRQYKNGIITDGERYQKVVDIWTQTTDVIQAALYRKLEHNEGSKMA---------S 722 Query: 721 SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR 780 ++MM DSGARG+ AQI+QL+GMRGLMAKP G IIE PITANFREGL+VL+YFISTHGAR Sbjct: 723 PLFMMVDSGARGNKAQIKQLSGMRGLMAKPSGEIIERPITANFREGLSVLEYFISTHGAR 782 Query: 781 KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVL 840 KGLADTALKTA+SGY+TR+LVDVAQD++V +DCGT GI + + +G + L R+ Sbjct: 783 KGLADTALKTADSGYMTRKLVDVAQDVIVHAEDCGTSNGITVHAIYDGDEEVASLSSRIY 842 Query: 841 GRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYG 900 GR + E ++ P + +++V N L++E+ + LE+ ++ +K+RSV++C+ G CA CYG Sbjct: 843 GRTSCERIVDPVSGEVIVDINDLINEKQAEQLEKIGIERLKIRSVLTCELKKGCCAKCYG 902 Query: 901 RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL 960 +LA G + GEA+G+IAAQSIGEPGTQLTMRTFH+GG A+ A + ++ KN G + Sbjct: 903 LNLATGQEVKIGEAVGIIAAQSIGEPGTQLTMRTFHVGGTATTAFKQPIVKAKNDGRVIY 962 Query: 961 -SNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVAN 1019 ++++V N+ G V+ ++N +++ +E GR ESY+ G +L +G + ET+A Sbjct: 963 TEDLRTVENADGNFVVLNKNCSVRIENEQGRELESYQPVIGTILYVPNGGTIKKDETLAT 1022 Query: 1020 WDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALK 1079 WDP+ +PVI E G V F DMI G T++++TD TG SSLVV++ + +L P + Sbjct: 1023 WDPYNVPVIAEKGGIVEFKDMIVGITVSKETDRETGASSLVVMEHKQ------ELHPQVV 1076 Query: 1080 IVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLP 1139 I DA+ +VL A + +P A + ++DG IS+G +A+ P++ TKDITGGLP Sbjct: 1077 IRDAKTREVL-------AHHAIPAGANLTVKDGETISAGTMVAKTPRKVAKTKDITGGLP 1129 Query: 1140 RVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVD-GSDPYEEMIPKWRQLNV 1198 RVA+LFEAR+PK+ +A + GIV + + + VIT + + ++P + + V Sbjct: 1130 RVAELFEARKPKDACTIARVEGIVRLSSKNTSRGKKVITIETPTGELVDHLVPMNKHVIV 1189 Query: 1199 FEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVR 1258 E + V GD +++GP +P +IL + G + ++VNEVQ+VYRLQGV+INDKH+E+IVR Sbjct: 1190 HEDDHVHLGDQLTEGPVSPEEILDVCGKERLQEHLVNEVQEVYRLQGVEINDKHVEIIVR 1249 Query: 1259 QMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATES 1318 QMLRK I G+++FL G+QV+ + N + A G A LLGITKASL TES Sbjct: 1250 QMLRKVVITEPGNTEFLWGDQVDKTTFDRINEQTVAQGGQPAAAKPVLLGITKASLETES 1309 Query: 1319 FISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEA 1378 FISAASFQ+TTRVLTEA+ GK D L G KENVI+G LIPAGTG++ + A G Sbjct: 1310 FISAASFQDTTRVLTEASTLGKTDTLEGFKENVIMGHLIPAGTGFSRYSKIEVEPAEGAE 1369 Query: 1379 PAAPQVTAEDASASLAELLNAGLGGSDNE 1407 A E+A+ ++LN + DNE Sbjct: 1370 EIAAASEEEEAAELAEDMLNDTI-NFDNE 1397 >UniRef50_Q7URW4 DNA-directed RNA polymerase subunit beta' n=8 Tax=Bacteria RepID=RPOC_RHOBA Length = 1429 Score = 1550 bits (4014), Expect = 0.0, Method: Composition-based stats. Identities = 695/1438 (48%), Positives = 966/1438 (67%), Gaps = 66/1438 (4%) Query: 9 KAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDY 68 + ++ +++I+LA P I++WSFGEVKKPETINYRT++PE+DGLFC RIFGP KD+ Sbjct: 7 SNYDRINDYASVRISLARPQDIKAWSFGEVKKPETINYRTYRPEKDGLFCERIFGPEKDW 66 Query: 69 ECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLL 128 EC CGKY+ +K++G+IC++CGV+VT ++VRR+RMGHIELA+P HIWF K++PSR+G LL Sbjct: 67 ECACGKYRGMKYKGMICDRCGVKVTHSRVRRKRMGHIELAAPVVHIWFFKAMPSRLGNLL 126 Query: 129 DMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGD-EFDAKMGAEAIQA 187 M +E+V+YF+ YVV + T+LE Q+LTEE+Y A +++G F A MGAEA++ Sbjct: 127 AMKTSSLEKVIYFQDYVVTDPKDTDLEMLQLLTEEEYRAARQQYGSGSFQADMGAEAVRD 186 Query: 188 LLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPP 247 LL +DL +QLR +L ET S+ K+K L R+K++E+ S N+PEWM+L V+PV+PP Sbjct: 187 LLNKLDLVTLSDQLRVDLAETGSKQKKKDLINRLKIVESIRDSDNRPEWMVLDVIPVIPP 246 Query: 248 DLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALL 307 DLRPLV LD G FATSDLNDLYRR+INRNNRL++L+DL AP++I+RNEKRMLQ++VDAL Sbjct: 247 DLRPLVLLDSGNFATSDLNDLYRRIINRNNRLRKLVDLNAPEVIIRNEKRMLQQSVDALF 306 Query: 308 DNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCG 367 DN R R + GS+ RPLKSL DMIKGKQGRFR+NLLGKRVDYS RSVI VGP L+LHQCG Sbjct: 307 DNNRCKRPVLGSSNRPLKSLTDMIKGKQGRFRENLLGKRVDYSARSVIVVGPRLKLHQCG 366 Query: 368 LPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAP 427 LPKK+ALEL++PFI +L+ G A TIK+AKKM+ER++ VWDIL++VI HPVLLNRAP Sbjct: 367 LPKKIALELYQPFIIRRLKELGHADTIKSAKKMLERKDEEVWDILEQVITNHPVLLNRAP 426 Query: 428 TLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMST 487 TLHR+GIQAFEP L+EG AI LHPLVC +NADFDGDQMAVH+PL++EAQ+EA LMMST Sbjct: 427 TLHRMGIQAFEPTLVEGNAIHLHPLVCKGFNADFDGDQMAVHLPLSIEAQVEAHTLMMST 486 Query: 488 NNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHAR 547 NN+ +P+NG+PI+ PSQD+V+G Y+MT + + KGEGM + +E + G+ LH R Sbjct: 487 NNVFAPSNGKPIMSPSQDIVMGCYFMTVEMPDQKGEGMTFSTYEEVDYALAQGIVGLHTR 546 Query: 548 VKVRITEYEKDANGELVAKTS-LKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLN 606 +K+R+ +Y+K + + + DTT GR ++P G+ N+A+ ++K ++ Sbjct: 547 IKLRLPKYQKLKTDDESGEYGAIIDTTPGRVRFNEMLPVGM--DFYNRAMRSGDLAKSIS 604 Query: 607 TCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQE 666 CY+ LG K T+ D +M TGF + RSG S DD+V P+ K + I EAE EV + ++ Sbjct: 605 DCYQRLGRKATIHLLDDMMQTGFRESTRSGLSFATDDLVTPDTKLQFIKEAEKEVMKHKK 664 Query: 667 QFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMA 726 + GL+T ERYN+V+D W A + ++ MM ++ + N +++M+ Sbjct: 665 AYDRGLMTGKERYNQVLDAWTHAREAITADMMSAMENDI-------RPGGWYINPVFLMS 717 Query: 727 DSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADT 786 SGARG QIRQLAGMRGLMAKP G IIETPI ANFREGL+VL+YF STHGARKGLADT Sbjct: 718 HSGARGGIEQIRQLAGMRGLMAKPTGEIIETPIKANFREGLSVLEYFSSTHGARKGLADT 777 Query: 787 ALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAE 846 ALKTA+SGYLTR+L DVAQ++VVT DCGT +GI V G V+ L + + GRV+ + Sbjct: 778 ALKTADSGYLTRKLADVAQNVVVTMHDCGTTQGITKGVVYRGEKVEVSLAESINGRVSLK 837 Query: 847 DVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARG 906 ++ P T +++V N ++ + +E ++ ++VR+ +SCD GVC CYG D++ G Sbjct: 838 SIVNPVTDEVIVEANQMITPEIARNIEAMGLEKIQVRTPMSCDAPLGVCRCCYGMDMSTG 897 Query: 907 HIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSV 966 ++ +G A+G+IAAQSIGEPGTQLTMRTFHIGG+ S+ ES I+ G ++L+ +K+V Sbjct: 898 SMVEEGMAVGIIAAQSIGEPGTQLTMRTFHIGGSVSKQVEESDIKTSRDGEVRLTRMKAV 957 Query: 967 VNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMP 1026 N+ G+ ++ +RN ++ L+D+ GR ESY +P GA+L +G++V G+ + W+P+++P Sbjct: 958 TNAEGRDIVLTRNGQIMLVDDRGREVESYDIPTGAMLMVKEGDKVTAGQVLCEWNPYSIP 1017 Query: 1027 VITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGN 1086 +++EV+G +RF D+++G+T+ E +G + + ++D DL P L I D G Sbjct: 1018 ILSEVTGKIRFEDVVEGETMRLDR-EASGNTRMTIIDHK------GDLHPQLVIEDETGR 1070 Query: 1087 DVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFE 1146 + +LP +A + +++G ++ G LA +P+E+GG DITGGLPRV ++FE Sbjct: 1071 PLHAQ--------YLPERATISVKEGEEVIPGKVLAEMPRETGGVSDITGGLPRVTEIFE 1122 Query: 1147 ARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVER 1206 AR+PK+PA++AE+ G V E K +R +I + E ++P + V G+ V+ Sbjct: 1123 ARKPKDPAVIAEVDGEVEILSERKRGKRTIIVRSESGIEREHLVPHGKHFLVHTGDIVKA 1182 Query: 1207 GDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATI 1266 G + DG PHDILR+ G AV +Y+++E+Q VYR Q V+INDKH E+I+ +MLRK I Sbjct: 1183 GQALVDGALVPHDILRVTGEEAVQQYLLHEIQQVYRSQRVEINDKHGEIIIARMLRKVKI 1242 Query: 1267 VNAGSSDFLEGEQVEYSRVKIANREL--------------------------------EA 1294 NAG ++ L G ++ + AN++L EA Sbjct: 1243 ENAGDTNLLPGSVMDRFHFRKANQDLQKCIKIANPGDTDYTEGTIVPKEAFEQTNAEVEA 1302 Query: 1295 NGKVGATYSR--------DLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRG 1346 G A R LLGITKA++ + SFISAASFQETT+VLTEAA+AGK D+L G Sbjct: 1303 MGGTPAKGKRCKSATASTQLLGITKAAVQSNSFISAASFQETTKVLTEAALAGKVDKLVG 1362 Query: 1347 LKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQVTAEDASASLAELLNAGLGGS 1404 LKENVI+G LIPAGTG+ Q+ Q S L G S Sbjct: 1363 LKENVILGHLIPAGTGFRIFQESEVNYRREALEELSQAPVSALEESFPLLGGDGEPAS 1420 >UniRef50_C1A6N8 DNA-directed RNA polymerase n=2 Tax=Bacteria RepID=C1A6N8_GEMAT Length = 1436 Score = 1528 bits (3957), Expect = 0.0, Method: Composition-based stats. Identities = 743/1451 (51%), Positives = 977/1451 (67%), Gaps = 96/1451 (6%) Query: 8 LKAQTKTEEFDAIKIALASPDMIRS------------------WSFGEVKKPETINYRTF 49 + + FD + + +AS + IR WS+GEV KPETINYR+F Sbjct: 6 SSREARASAFDYMSVRIASAEEIRGPKDPKERERLEMAGLRTWWSWGEVTKPETINYRSF 65 Query: 50 KPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELAS 109 KPE+DGLFC RIFGPVKD+EC CGKYKR+++RGVIC++CGVEVT +KVRRERMGHIELA Sbjct: 66 KPEKDGLFCERIFGPVKDWECHCGKYKRIRYRGVICDRCGVEVTLSKVRRERMGHIELAV 125 Query: 110 PTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYL--- 166 P AHIWF K+LPS +G LLD+ LRD+E+V+Y+ +Y+VIE G + +Q+L E++YL Sbjct: 126 PVAHIWFFKTLPSPMGNLLDVTLRDLEKVIYYSNYIVIEPGNQEVRERQLLDEDEYLTLR 185 Query: 167 -DALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLE 225 A E F +GA A++ LLK +D+++ E LR + S+ ++K++ KR+K+++ Sbjct: 186 QKAKAEGDAAFQCDIGAPAVRELLKRLDIDKVAETLRGSVVGETSQHRKKQMLKRLKIVD 245 Query: 226 AFVQSG------NKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRL 279 AF SG N+PEWMIL V+PV+PPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRL Sbjct: 246 AFRTSGEGGEIRNRPEWMILDVIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRL 305 Query: 280 KRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFR 339 ++L+ AP++I+RNEKRMLQEAVDAL DNGRR +AI G KRPLKSL+DM+KGKQGRFR Sbjct: 306 QKLISHRAPEVILRNEKRMLQEAVDALFDNGRRSKAIRGRGKRPLKSLSDMLKGKQGRFR 365 Query: 340 QNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKK 399 QNLLGKRVDYSGRSVI VGP L+LHQCGLPK MALELFKPFI KL G A T+K AKK Sbjct: 366 QNLLGKRVDYSGRSVIVVGPELKLHQCGLPKMMALELFKPFIIHKLVESGEAETVKRAKK 425 Query: 400 MVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNA 459 +VERE A+V+++L+ +I++HPVLLNRAPTLHRLGIQAFEPVL+EGKAI++HPLVCAA+NA Sbjct: 426 IVERENAMVYEVLEGIIKDHPVLLNRAPTLHRLGIQAFEPVLVEGKAIRIHPLVCAAFNA 485 Query: 460 DFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRD--- 516 DFDGDQMAVHVPL+ EAQ+E+R LM+S+NNIL P++G P+ PSQD+VLG Y T+ Sbjct: 486 DFDGDQMAVHVPLSFEAQIESRVLMLSSNNILKPSDGRPVAEPSQDIVLGCYVATKAPTD 545 Query: 517 -CVNAKGEGMV-----LTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLK 570 +AK E V T E E +G A+ + ++ E + Sbjct: 546 FDKHAKDEAWVRKLPTFTDTAEVEIAIANGRATYQSPIRWLDRREE---------TPTWV 596 Query: 571 DTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFA 630 TT GR + +IVPKGLP +N+ + KKA+ +++ YR GL TV D++ GF Sbjct: 597 TTTTGRVLFDVIVPKGLP--FLNKDMKKKALGELVFESYRNAGLAETVALLDRLKEFGFR 654 Query: 631 YAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAAN 690 A R G S+GI+D+ IP++K ++ EA V Q + +G +T GERYNKVID W AN Sbjct: 655 NATRGGVSIGIEDLHIPKEKQTLLQEASERVERFQRAYATGNITNGERYNKVIDTWTHAN 714 Query: 691 DRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKP 750 V+ AM+ ++ E Q FN ++MM DSG+RGS QIRQLAGMRGLMAKP Sbjct: 715 TDVADAMVKTMR-----------ESQGGFNPVFMMYDSGSRGSRDQIRQLAGMRGLMAKP 763 Query: 751 D-------GSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDV 803 G IIE PI +NFREGL+VL+YF STHGARKGLADTALKTA++GYLTRRLVDV Sbjct: 764 QKKLTGGIGEIIENPIKSNFREGLSVLEYFSSTHGARKGLADTALKTADAGYLTRRLVDV 823 Query: 804 AQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKP------GTADIL 857 AQD+ + E+DCGT GI + + EG DV EPL +R++G V AEDV+ P G +L Sbjct: 824 AQDMTIAEEDCGTILGIDTSALKEGEDVIEPLAERLVGNVAAEDVIDPLERDEAGRPRLL 883 Query: 858 VPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGV 917 V TL+ E+ +EE ++ VK+RSV++C+ G+C CYGR+LA +++ GEA+G+ Sbjct: 884 VEAGTLISEEMAQSIEEAGIETVKIRSVLTCEAKRGLCRMCYGRNLATMQMVDLGEAVGI 943 Query: 918 IAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLS-NVKSVVNSSGKLVIT 976 IAAQSIGEPGTQLT+RTFH+GG ASR A +++ + K G I+ + +V+N G+ V+T Sbjct: 944 IAAQSIGEPGTQLTLRTFHVGGTASRIAEQTARKTKKAGVIEFGDRLFTVINKEGQKVVT 1003 Query: 977 SRNTELKL---IDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSG 1033 S EL + D+ + +VP GA L DG+ V +TV WDP++ P+I +V G Sbjct: 1004 SYEGELVIKTSADKNASIEARLQVPLGAYLMVEDGQVVKKDDTVFTWDPYSNPIIADVDG 1063 Query: 1034 FVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGT 1093 VRF D+++ ++++ + DELTGL VV++ E K L P ++I G Sbjct: 1064 TVRFVDLVEDESLSEELDELTGLRQRVVIEDRE-----KKLHPHIEIWQESGGK-----E 1113 Query: 1094 DMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEP 1153 + LP A++ ++DG I++G LA++ +E+ T+DITGGLPRVA+LFEARRPK+P Sbjct: 1114 KRVRDFILPVGAVITIDDGGHIAAGTILAKVSREAYKTRDITGGLPRVAELFEARRPKDP 1173 Query: 1154 AILAEISGIVSFGKETKGKRRLVITP----------VDGSDPYEEMIPKWRQLNVFEGER 1203 A ++EI G V FG+ +GKR + + P D ++ +P + L V EG+R Sbjct: 1174 ATISEIDGFVRFGEIKRGKREVFVRPATVDKGLWTADDTAEEQTYEVPSGKHLRVHEGDR 1233 Query: 1204 VERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRK 1263 V GD IS+GP PHDILR++G AV Y++NEVQ+VYRLQGVKINDKHI VIV+QML+K Sbjct: 1234 VRAGDRISEGPVNPHDILRIKGPRAVQEYLLNEVQEVYRLQGVKINDKHIGVIVKQMLQK 1293 Query: 1264 ATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAA 1323 + ++G ++ LEGE V+ S + N + + AT LLGITKASL T+SF+SAA Sbjct: 1294 VRVADSGDTELLEGEHVDRSEFRDVNDDAKKRKIRPATAEPLLLGITKASLTTQSFVSAA 1353 Query: 1324 SFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQ 1383 SFQETTRVLT+AA+ G RD+L GLKEN+I+G LIPAGTG + D P Sbjct: 1354 SFQETTRVLTDAAIRGSRDDLLGLKENIIIGHLIPAGTGLYRYHDVQVDSETLPEPEPMP 1413 Query: 1384 VTAEDASASLA 1394 E SL Sbjct: 1414 EALEPNFDSLP 1424 >UniRef50_Q5GRY9 DNA-directed RNA polymerase subunit beta' n=1189 Tax=cellular organisms RepID=RPOBC_WOLTR Length = 2839 Score = 1510 bits (3909), Expect = 0.0, Method: Composition-based stats. Identities = 738/1364 (54%), Positives = 965/1364 (70%), Gaps = 23/1364 (1%) Query: 14 TEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCG 73 + FD I I++ASP+ I+S S+GEVK T NYRTFK E+ GLFC +IFGPV D ECLCG Sbjct: 1445 AQSFDKIGISIASPENIKSMSYGEVKDVSTANYRTFKVEKGGLFCPKIFGPVNDDECLCG 1504 Query: 74 KYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLR 133 KYK+ +HRG ICEKCGVEVT +KVRRERMGHIELASP AHIWFLKSLPSRIG LLDM LR Sbjct: 1505 KYKKRRHRGRICEKCGVEVTSSKVRRERMGHIELASPVAHIWFLKSLPSRIGALLDMSLR 1564 Query: 134 DIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFG-DEFDAKMGAEAIQALLKSM 192 DIE +LY ++Y+VI+ ++ E+ +I++E+ Y +A +++G D F A G EAI+ LL + Sbjct: 1565 DIENILYSDNYIVIDPLVSPFEKGEIISEKIYNEAKDDYGIDSFVAMQGVEAIRELLTCL 1624 Query: 193 DLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPL 252 DL Q + LR EL SE +RKK+ KR++++E F++SGN+PEWMILT +P+LPPDLRPL Sbjct: 1625 DLHQIRKDLRLELESVASEIRRKKIIKRLRIIENFIKSGNRPEWMILTTIPILPPDLRPL 1684 Query: 253 VPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRR 312 V L+ GR A SDLN YR +INRNNRL++LL L P+I++RNEKRMLQEAVD+L DN RR Sbjct: 1685 VSLESGRPAVSDLNHHYRTIINRNNRLRKLLSLNPPEIMIRNEKRMLQEAVDSLFDNSRR 1744 Query: 313 GRAITGSNKRPLK-SLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKK 371 + K S++DM+KGKQGRFRQNLLGKRVDYSGRSVI VGP L+L+QCGLPK+ Sbjct: 1745 NALTNKAGAIGYKKSISDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPALKLNQCGLPKR 1804 Query: 372 MALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHR 431 MALELFKPF+Y KL+L G+A TIK A K++ E+ VWD+L+EVI+EHPVLLNRAPTLHR Sbjct: 1805 MALELFKPFVYSKLKLYGMAPTIKFASKLIRAEKPEVWDMLEEVIKEHPVLLNRAPTLHR 1864 Query: 432 LGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNIL 491 LGIQAFEP+LIEGKAIQLHPLVC A+NADFDGDQMAVHVP++LEAQLEAR LMMSTNN+L Sbjct: 1865 LGIQAFEPILIEGKAIQLHPLVCTAFNADFDGDQMAVHVPISLEAQLEARVLMMSTNNVL 1924 Query: 492 SPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVLTG-PKEAERLYRSGLASLHARVK 549 SP+NG PIIVPS+D++LG+YY+T ++ + +G+ + G E E G +H+ +K Sbjct: 1925 SPSNGRPIIVPSKDIILGIYYLTLQEQTDKEGDDLPFLGTFGEVEHSLSDGTLHIHSSIK 1984 Query: 550 VRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPK--GLPYSIVNQALGKKAISKMLNT 607 RI + N E TT GR ILW I PK L + +VNQ L K ++ +++ Sbjct: 1985 YRI----EYTNSEGETCYKTIRTTPGRLILWQIFPKHENLNFDLVNQVLTVKEVTSIVDL 2040 Query: 608 CYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQ 667 YR G TV F+D++M GF YA SG S D+VIPE K E + A E+ + Q Sbjct: 2041 IYRNCGQSATVEFSDRLMVLGFEYATFSGISFSRCDLVIPETKAEHVDHARGEIKKFSMQ 2100 Query: 668 FQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMAD 727 +Q GL+T ERYNKVID W+ D ++ M+ ++ + +NS+YMM + Sbjct: 2101 YQDGLITRSERYNKVIDEWSKCTDMIANDMLKSISVYD---------RNSKYNSVYMMVN 2151 Query: 728 SGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTA 787 SGARGS +Q++QLAGMRGLM KP G IIETPI +NFREGLNV +YF STHGARKGLADTA Sbjct: 2152 SGARGSTSQMKQLAGMRGLMTKPSGEIIETPIISNFREGLNVFEYFNSTHGARKGLADTA 2211 Query: 788 LKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAED 847 LKTANSGYLTRRLVDV+Q+ +VT+ DC T G+++ +EGG + L VLGR A D Sbjct: 2212 LKTANSGYLTRRLVDVSQNCIVTKHDCKTKNGLVVRATVEGGTIVASLESVVLGRTAAND 2271 Query: 848 VLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGH 907 + P T ++LV L+ E + +DAVK+RS ++C+ GVC+ CYGRDLA G Sbjct: 2272 IYNPVTKELLVKAGELIDEDKVKQINIAGLDAVKIRSPLTCEVSPGVCSLCYGRDLATGK 2331 Query: 908 IINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVV 967 I++ GEA+GVIAAQS+GEPGTQLTMRTFHIGG +R S+I IKLSN ++ Sbjct: 2332 IVSIGEAVGVIAAQSVGEPGTQLTMRTFHIGGVMTRGVESSNIIASINAKIKLSNSNIII 2391 Query: 968 NSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPV 1027 + +G + SR+ E+ LID G K + +PYGA L +G+ V G+ +A WDP+T+P+ Sbjct: 2392 DKNGDKIAISRSCEVVLIDSLGSEKLRHSIPYGAKLCVDEGKSVKIGDKIAEWDPYTLPI 2451 Query: 1028 ITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGND 1087 ITE +G V + D+ DG +IT DE TG+SS VV D +GG +LRP + ++D G Sbjct: 2452 ITEKTGTVLYQDLKDGVSITEVMDESTGISSKVVKDWKL-YSGGANLRPRIVLLDDNGK- 2509 Query: 1088 VLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEA 1147 V+ + + A YF+P A++ ++DG ++ +GD + R P+ES T+DITGGLPRV +LFEA Sbjct: 2510 VMTLASGIEACYFIPIGAVLNVQDGQKVHAGDVITRTPRESVKTRDITGGLPRVIELFEA 2569 Query: 1148 RRPKEPAILAEISGIVSF-GKETKGKRRLVITPVDGS-DPYEEMIPKWRQLNVFEGERVE 1205 RRP+E AI++EI G V F K+ +GKR ++I P++ P E ++ + + + V EG+ V Sbjct: 2570 RRPREHAIVSEIDGHVVFSEKDRRGKRSVLIKPLNEQISPIEYLVSRSKHVIVNEGDFVR 2629 Query: 1206 RGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKAT 1265 +GD++ DG HDILR+ G+ A+ Y+++E+Q VYRLQGV+I++KH+EVI++QML+K Sbjct: 2630 KGDLLMDGDPDLHDILRVLGLEALAHYMISEIQQVYRLQGVRIDNKHLEVILKQMLQKVE 2689 Query: 1266 IVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASF 1325 I + G + +L GE ++ V N + +GK A Y L GIT+ASL T+SFISAASF Sbjct: 2690 ITDPGDTMYLVGESIDKLEVDKGNDVMSNSGKRPACYLPILQGITRASLETKSFISAASF 2749 Query: 1326 QETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDR 1369 QETT+VLTEAA GK D L GLKENVIVGRLIPAGTG + R Sbjct: 2750 QETTKVLTEAAFCGKEDPLSGLKENVIVGRLIPAGTGLIMSKVR 2793 >UniRef50_D2QMP3 DNA-directed RNA polymerase, beta' subunit n=4 Tax=Bacteria RepID=D2QMP3_9SPHI Length = 1449 Score = 1499 bits (3880), Expect = 0.0, Method: Composition-based stats. Identities = 697/1446 (48%), Positives = 967/1446 (66%), Gaps = 103/1446 (7%) Query: 5 LKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGP 64 + F K + +F ++ I+LASP+ I S+GEV +PETINYRT+KPE GLFC RIFGP Sbjct: 1 MSFKKNKKLNSDFASVTISLASPESILESSYGEVTQPETINYRTYKPEMGGLFCERIFGP 60 Query: 65 VKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRI 124 VKD+EC CGKYKR++++G+IC++CGVEVT+ KVRRERMGHIEL P AHIW+ +SLP++I Sbjct: 61 VKDWECHCGKYKRIRYKGIICDRCGVEVTEKKVRRERMGHIELVVPVAHIWYFRSLPNKI 120 Query: 125 GLLLDMPLRDIERVLYFESYVVIEGG---MTNLERQQILTEEQYLDALEEFG-------- 173 G LL + + +++V+Y+E YVV++ G + + LTE++YLD +++ Sbjct: 121 GYLLGLSTKKLDQVIYYERYVVVQPGVKAEDGINQLDFLTEDEYLDIIDKLPSSNQHLDD 180 Query: 174 ---DEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQS 230 ++F AKMGAEA++ LL ++L++ LR S+ ++ + KR+K++EAF ++ Sbjct: 181 KDPNKFIAKMGAEALEMLLSRVELDELSYSLRHAAATDTSQQRKAEALKRLKVVEAFREA 240 Query: 231 G----NKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLA 286 N+PEWM++ ++PV+PP+LRPLVPLDGGRFATSDLNDLYRRVI RNNRLKRL+++ Sbjct: 241 NGRIENRPEWMVIKMVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIK 300 Query: 287 APDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKR 346 AP++I+RNEKRMLQEAVD+L DN R+ A+ R LKSL+DM+KGKQGRFRQNLLGKR Sbjct: 301 APEVILRNEKRMLQEAVDSLFDNSRKVNAVRSEGNRALKSLSDMLKGKQGRFRQNLLGKR 360 Query: 347 VDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEA 406 VDYSGRSVI VGP L+LH+CGLPK MA ELFKPF+ KL RG+ T+K+AKK+V+R++ Sbjct: 361 VDYSGRSVIVVGPELKLHECGLPKDMAAELFKPFVIRKLIERGIVKTVKSAKKIVDRKDP 420 Query: 407 VVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQM 466 V+WDIL+ V++ HPVLLNRAPTLHRLGIQAF+P LIEGKAIQLHPLVC A+NADFDGDQM Sbjct: 421 VIWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDGDQM 480 Query: 467 AVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTR-----DCVNAK 521 AVHVPL EA LEA LM++++NIL+PANG PI VPSQD+VLGLYY+T+ Sbjct: 481 AVHVPLGQEAVLEASLLMLASHNILNPANGAPITVPSQDMVLGLYYVTKGRKSTPEYPIP 540 Query: 522 GEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWM 581 GEGM G +E G S HA +K R+ +D NG+LV K DT GR + Sbjct: 541 GEGMTFYGTEEVVIGINEGKISKHANIKCRVKV--RDENGQLVYKV--IDTVAGRLLFNQ 596 Query: 582 IVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGI 641 VP+ + +N+ L KK + +++ ++I G T F D+I GF A R G S+G+ Sbjct: 597 AVPEEV--GYINELLTKKKLQQIIALIFKISGGARTAQFLDEIKELGFQMAFRGGLSIGL 654 Query: 642 DDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNL 701 D++IPE K ++ EA+AEV + + + GL+T ERYN+VIDIW N R+++ +M L Sbjct: 655 SDVMIPEAKQGLVEEAKAEVQAVWDNYLMGLITENERYNQVIDIWTRVNSRLTETLMKQL 714 Query: 702 QTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPD-------GSI 754 + + Q FNSIYMM SGARGS QIRQL GMRGLMAKP G I Sbjct: 715 EAD-----------QGGFNSIYMMMHSGARGSREQIRQLGGMRGLMAKPQKNLQGSVGEI 763 Query: 755 IETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDC 814 IE PI +NF+EGL+VL+YFISTHGARKGLADTALKTA++GYLTRRL DVAQD++++EDDC Sbjct: 764 IENPILSNFKEGLDVLEYFISTHGARKGLADTALKTADAGYLTRRLHDVAQDVIISEDDC 823 Query: 815 GTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEE 874 GT G+ ++ + + D+ EPL +R+LGR T D+ P T +++V L+ E+ ++E Sbjct: 824 GTLRGLQVSALKDNEDIVEPLSERILGRTTVHDIYDPLTKELIVASGELVTEEVAAHIDE 883 Query: 875 NSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRT 934 S++ V++RSV++C++ GVCA CYGR+LA G +++ GEA+GVIA+QSIGEPGTQLT+RT Sbjct: 884 TSIETVEIRSVLTCESRQGVCAKCYGRNLASGRMVDIGEAVGVIASQSIGEPGTQLTLRT 943 Query: 935 FHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSG----KLVITSRNTELKLIDEFGR 990 FH+GG AS A ++SI+ K G I+ +++V + + ++ R+ E+++++ R Sbjct: 944 FHVGGTASNIAVDASIKAKFDGLIEFEEMRTVQSEDNEGNAQTIVMGRSGEVRIVNPNDR 1003 Query: 991 T--KESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITR 1048 + S VPYGA L DG+ V G+ + WDP+ +++E++G + F + DG T Sbjct: 1004 SVVLISNNVPYGAFLRVKDGDMVKKGDDICAWDPYNAVILSELTGTLNFDAIEDGITYRE 1063 Query: 1049 QTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTD---MPAQYFLPGKA 1105 + DE TG V+++S ++ PA+ + + +P D + Y LP + Sbjct: 1064 EFDEQTGFQEKVIIESRDKAKN-----PAIIVQGTTTLTLHLPDNDGGPLQKSYNLPVGS 1118 Query: 1106 IVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSF 1165 + +++G +I +G LA+IP+ G T+DITGGLPRV +LFEAR P PA+++EI G+V++ Sbjct: 1119 RLVVKEGQKIKAGQPLAKIPRNVGKTRDITGGLPRVTELFEARNPSNPAVVSEIDGVVTY 1178 Query: 1166 GKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRG 1225 G +G R + I DG+ + ++P + + V + + V G +SDG P DIL ++G Sbjct: 1179 GAIKRGNREIFIESRDGTKK-KYLVPLSKFILVQDNDFVRAGAPLSDGAITPSDILAIKG 1237 Query: 1226 VHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRV 1285 AV Y+VNE+Q+VYRLQGVKINDKHIE IVRQM++K I+++G ++FLEG+ V+ Sbjct: 1238 PTAVQEYLVNEIQEVYRLQGVKINDKHIEAIVRQMMQKVEIIDSGDTNFLEGQVVDKWAF 1297 Query: 1286 KIANRELEANGKV-----------------------------------------GATYSR 1304 + N ++ V A Sbjct: 1298 REENDKVLDAKVVMDAGDSPNVKPGQIVTSRQLRDENSSLKRRDQALVTVRDAMAAVSQP 1357 Query: 1305 DLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 L+GIT++SL T+SFISAASFQETT+VL+EA++ GKRD L GLKENVIVG LIPAGTG Sbjct: 1358 TLMGITQSSLGTDSFISAASFQETTKVLSEASIRGKRDVLDGLKENVIVGHLIPAGTGLR 1417 Query: 1365 YHQDRM 1370 +Q + Sbjct: 1418 RYQSAI 1423 >UniRef50_UPI00016C3582 DNA-directed RNA polymerase beta chain n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3582 Length = 1463 Score = 1499 bits (3880), Expect = 0.0, Method: Composition-based stats. Identities = 707/1459 (48%), Positives = 940/1459 (64%), Gaps = 93/1459 (6%) Query: 9 KAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDY 68 + + +F A++I+LASP I SWS GEVKKPETINYRT++PE+DGLFC +IFGP KD+ Sbjct: 18 TSYERINDFGAVRISLASPQDIHSWSHGEVKKPETINYRTYRPEKDGLFCEKIFGPEKDW 77 Query: 69 ECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLL 128 EC CGKY+ +K++G+IC++CGV+V ++VRR+RMGHIELA+ HIWF K++PSR+G LL Sbjct: 78 ECSCGKYRGMKYKGMICDRCGVKVAHSRVRRKRMGHIELAAQVVHIWFFKAMPSRLGTLL 137 Query: 129 DMPLRDIERVLYFESYVVIEGGM---TNLERQQILTEEQYLDALEEFGDEFDAKMGAEAI 185 DM +E+++YF+ YVVI G T L+ +++L EE+Y + E GD F+ MGAEAI Sbjct: 138 DMKTTALEKIIYFQDYVVINPGDPEVTKLKERELLDEEKYKEKRAELGDAFEVDMGAEAI 197 Query: 186 QALLKSMDLEQECEQLREELN------ETNSETKRKKLTKRIKLLEAFVQSGNKPEWMIL 239 + LL++++L ++LRE LN E S+ + K+L KR+K +EA S NK EWM+L Sbjct: 198 RKLLENLNLVDLSKELRERLNKEVARGEKKSKQREKELVKRLKTVEALRDSSNKCEWMVL 257 Query: 240 TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRML 299 +PV+PPDLRPLV LD G FATSDLNDLYRR+INRNNRLK+L+DL AP++I+RNEKRML Sbjct: 258 ECIPVIPPDLRPLVLLDSGNFATSDLNDLYRRIINRNNRLKKLVDLNAPEVIIRNEKRML 317 Query: 300 QEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP 359 Q++VDAL DN R R + GS+ RPLKSL DMIKGKQGRFR+NLLGKRVDYS RSVI VGP Sbjct: 318 QQSVDALFDNNRCKRPVLGSSNRPLKSLTDMIKGKQGRFRENLLGKRVDYSARSVIVVGP 377 Query: 360 YLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREH 419 L+LHQCGLPKK+ALELF+PFI +L+ A TIK+AKKM+ER++ VVWDIL+EV R H Sbjct: 378 ELKLHQCGLPKKIALELFQPFIIRRLKELNHADTIKSAKKMLERKDDVVWDILEEVTRSH 437 Query: 420 PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLE 479 PV+LNRAPTLHR+GIQAFEPVLIEG AI++HPLVC +NADFDGDQMAVH+PL++EAQ+E Sbjct: 438 PVMLNRAPTLHRMGIQAFEPVLIEGNAIRIHPLVCKGFNADFDGDQMAVHLPLSIEAQVE 497 Query: 480 ARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-----RDCVNAKGEGMVLTGPKEAE 534 A LMMSTNNI SPANG PII PSQD+V+G YY+T D G+GMV P E Sbjct: 498 ATVLMMSTNNIFSPANGNPIITPSQDIVMGCYYLTASRGNEDEAVEAGDGMVFHSPVELF 557 Query: 535 RLYRSGLASLHARVKVRITEYE------KDANGELVAK------TSLKDTTVGRAILWMI 582 R + HA+++VR+ + KD G A+ L TTVGR I I Sbjct: 558 RAHAESKLGYHAKIRVRLPIEKKVISEIKDEKGNPRAEELPRKANGLVRTTVGRVIFNDI 617 Query: 583 VPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGID 642 + + + + L K +S+++ CY++LG + T+ D++ TGF +A RSG S Sbjct: 618 LHPKMAFYDL--PLSSKHLSRIIADCYQVLGRRETIALLDRMKETGFRHATRSGLSFAAS 675 Query: 643 DMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQ 702 D+ PE K ++ E + EV +++ F G++T ERYNKVID+W A D ++K MM +L+ Sbjct: 676 DLRTPENKEGVLKEKDKEVDKVRRNFDRGIITETERYNKVIDLWMEARDLITKRMMTDLR 735 Query: 703 TETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITAN 762 + ++ E N IY+MA SGARG QIRQLAGMRGLMAKP G+IIETPI +N Sbjct: 736 DDRRKDQVTGREVPY-LNPIYLMAHSGARGGIEQIRQLAGMRGLMAKPSGAIIETPIKSN 794 Query: 763 FREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMM 822 FREGL VL+YF STHGARKGLADTALKTA+SGYLTR+L DVAQ++V+T DCGT +GI Sbjct: 795 FREGLTVLEYFSSTHGARKGLADTALKTADSGYLTRKLADVAQNVVITMHDCGTTQGISK 854 Query: 823 TPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKV 882 + +G +V L D + GRV+ ++ P T ++++ N ++ LE+ +D + V Sbjct: 855 GVMYKGDEVDRSLSDAIRGRVSRSEIAHPTTGEVILAENEMITPGKAKELEKLGIDKILV 914 Query: 883 RSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAAS 942 RS ++C GVC CYG DLA G I+ G A+G+IAAQSIGEPGTQLTMRTFHIGGAA Sbjct: 915 RSPMTCQAPLGVCRLCYGMDLATGSIVEDGMAVGIIAAQSIGEPGTQLTMRTFHIGGAAQ 974 Query: 943 --RAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYG 1000 ++ + K G ++L + VVN G+ + + T LI E Y VP+G Sbjct: 975 SRGNVGDNEHKAKKGGIVQLERITVVVNDQGQSIALAPRTGEVLILRGKDIAERYGVPHG 1034 Query: 1001 AVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLV 1060 A L +G++V G + WDPH++P+I E SG VRF D+I+G+T+ R+TD TG+ Sbjct: 1035 AELLVAEGQEVQQGTGLVKWDPHSVPLIAEDSGTVRFKDIIEGKTVRRETDRATGVERFT 1094 Query: 1061 VLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDT 1120 +++ DL P + I +G D + Y++ +A +Q+ +G ++S+G Sbjct: 1095 IMEHK------GDLHPQIVIETGRGKDDRV--------YYIHERANLQVVNGQKVSAGAL 1140 Query: 1121 LARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPV 1180 LA+ P+E T+DITGGLPRV +LFEARRP+ PA++AE+ G V K +R++ Sbjct: 1141 LAKTPREVSQTQDITGGLPRVTELFEARRPRNPAVMAEVPGRVRIDPTRKRGKRIIEVIK 1200 Query: 1181 DGSD------PYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIV 1234 + D E ++P + V +GE V GD + GP PHDIL++RG V Y+V Sbjct: 1201 ETEDGKSLGEAREHLVPASAHIRVHQGEYVTEGDPLVHGPLVPHDILKIRGEQEVQEYLV 1260 Query: 1235 NEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEA 1294 EVQ VYR Q V I+DKHIE+IV QMLRK + G + L G ++ + NR L Sbjct: 1261 REVQSVYRSQRVDIDDKHIEIIVAQMLRKVKVTLTGDTGLLPGVVMDKFAFQEVNRRLTD 1320 Query: 1295 NGKV------------------------------------------GATYSRDLLGITKA 1312 A+ LLGITKA Sbjct: 1321 ECVRVVNKGDTELVEGKVYSREAFEEERAAIEKDKKKKQPTFVVPEPASCEVQLLGITKA 1380 Query: 1313 SLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRR 1372 ++ ++SFISAASFQETT+VLTEAA+A K D L GLKENVI+G LIPAGTG+ HQ+ + Sbjct: 1381 AVQSDSFISAASFQETTKVLTEAALASKVDYLVGLKENVILGHLIPAGTGFKTHQEAEVK 1440 Query: 1373 RAAGEAPAAPQVTAEDASA 1391 A E A Sbjct: 1441 VNVPGAAGRAAPVEEVAPD 1459 >UniRef50_Q2S1Q6 DNA-directed RNA polymerase subunit beta' n=62 Tax=root RepID=RPOC_SALRD Length = 1448 Score = 1497 bits (3875), Expect = 0.0, Method: Composition-based stats. Identities = 703/1475 (47%), Positives = 977/1475 (66%), Gaps = 111/1475 (7%) Query: 5 LKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGP 64 + + ++ +FD+I I+LASP+ I S+GEV KPETINYR+FKPE GLFC +IFGP Sbjct: 1 MPYGNSKEIETDFDSITISLASPEDILERSYGEVMKPETINYRSFKPEMGGLFCEKIFGP 60 Query: 65 VKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRI 124 VKDYEC CGKYKR++++G+IC++CGVEVT+ VRRERMGHI L+ P HIW+ K+LP++I Sbjct: 61 VKDYECHCGKYKRIRYKGIICDRCGVEVTRKAVRRERMGHISLSVPVVHIWYFKTLPNKI 120 Query: 125 GLLLDMPLRDIERVLYFESYVVIEGGMTN---LERQQILTEEQYLDALEEFGD------- 174 G LL + +D+E+V+Y+E+Y+VI+ G +E Q+LTEE+Y + L + D Sbjct: 121 GHLLGLKSKDLEKVIYYENYIVIQPGTAERLGVEENQLLTEEEYYEILYQIRDDNNRLQD 180 Query: 175 ----EFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQS 230 +F AK+G EA++ +L+ ++L++ ++LR ++ S+ ++ K KR+ ++EAF ++ Sbjct: 181 DNEEKFIAKIGGEAVETMLERLELDKLAQELRYQVRTETSQQRKSKALKRLDVVEAFREA 240 Query: 231 G----NKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLA 286 NKPEWM++ V+PV+PP+LRPLVPLDGGRFATSDLNDLYRRVI RNNRLKRL+D+ Sbjct: 241 NEDGTNKPEWMVMRVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIDIK 300 Query: 287 APDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKR 346 AP++I+RNEKRMLQEAVD+L DN R+ ++ GS+ RPLKSL+DM+KGKQGRFRQNLLGKR Sbjct: 301 APEVILRNEKRMLQEAVDSLFDNSRKSNSVRGSSNRPLKSLSDMLKGKQGRFRQNLLGKR 360 Query: 347 VDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEA 406 VDYSGRSVI GP+L LHQCGLPK+MA+ELFKPFI +L RG+ T+K+AKK V+++ Sbjct: 361 VDYSGRSVIVSGPHLELHQCGLPKEMAVELFKPFIIRRLIERGIVKTVKSAKKYVDKKTE 420 Query: 407 VVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQM 466 VWDIL++VI+ PVLLNRAPTLHRLGIQAF+PVL E KAI++HPLVC AYNADFDGDQM Sbjct: 421 DVWDILEKVIQGRPVLLNRAPTLHRLGIQAFQPVLTENKAIEIHPLVCPAYNADFDGDQM 480 Query: 467 AVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMV 526 AVHVPL+ EA LE+ LM+S++N+ SPA+G P+ VPSQD++LGLYY+T+ N KGEGM Sbjct: 481 AVHVPLSHEACLESMVLMLSSHNVRSPADGGPLAVPSQDMILGLYYITKAKSNQKGEGMR 540 Query: 527 LTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKG 586 +E + + +LHA++++R + D +GE++ DTTVGR I +P Sbjct: 541 FANVQEVRQAFDQDQVALHAKIQLR----DPDGSGEMI------DTTVGRVIFNETLPDT 590 Query: 587 LPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVI 646 L VN+ L K + ++ + G + T F D I GF + SG + + D++I Sbjct: 591 L--DYVNEVLSTKNVRPVIARVLKQTGFEETADFLDAIKDMGFRRSTTSGMTFSLSDIII 648 Query: 647 PEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETV 706 P++K E+I EA V E ++ + G +T ERYN+VID+W N++VS+ + D L+ Sbjct: 649 PDEKEELIEEANETVEEAEQNYSMGFITDNERYNQVIDVWTKTNNKVSEVLFDALK---- 704 Query: 707 INRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDG---------SIIET 757 E + FN I+ MADSGARGS QIRQL GMRGLMAKP I+E Sbjct: 705 -------EHKEGFNPIFTMADSGARGSQEQIRQLGGMRGLMAKPQKNIGEGGGGGEILEN 757 Query: 758 PITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTH 817 PI +NF+EGL V +YFISTHG+RKGLADTALKTA++GYLTRRLVDV+Q + VTE DCGT Sbjct: 758 PILSNFKEGLTVQEYFISTHGSRKGLADTALKTADAGYLTRRLVDVSQSVTVTEHDCGTL 817 Query: 818 EGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSV 877 GI + + + +V PL DR+ GRV+ DV P T +++V N L+ ++ D + + S+ Sbjct: 818 RGINVGALKDNEEVVAPLSDRITGRVSVRDVYDPHTDELIVEANELITDEIADDIAQTSI 877 Query: 878 DAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHI 937 + +++RSV++C+ + GVC CYG++LA G ++ GE++GV+AAQSIGEPGTQLT+RTFH Sbjct: 878 EEIEIRSVLTCEAERGVCTLCYGQNLATGRMVEVGESVGVVAAQSIGEPGTQLTLRTFHT 937 Query: 938 GGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSG---KLVITSRNTELKLIDEFGRTKE- 993 GG A+R ES+IQ K G+++ N+++V K V+ SR E++++D G +E Sbjct: 938 GGTATREVGESTIQAKFAGTLEFENLRTVTYEDTDGPKEVVLSRQGEVRIMDTDGDRREL 997 Query: 994 -SYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDE 1052 SY VPYGA L +GE V G+ +A+WDP+ ++TE +G VRF D+I+ T +TDE Sbjct: 998 TSYVVPYGAELLVDEGEDVEDGDVLASWDPYNSLILTEANGTVRFEDIIEDTTYREETDE 1057 Query: 1053 LTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDG 1112 TG V+++S ERT L PA+ + G +Y +P A +Q+++G Sbjct: 1058 QTGHKEKVIVESRERT-----LTPAVIVETEDGEQR---------EYNMPVDARIQVDEG 1103 Query: 1113 VQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGK 1172 ++ +G TLA++P+++ T DITGGLPRV +LFEAR P EPA+++EI GIVSFG + +G Sbjct: 1104 DEVQAGQTLAKMPRQAAQTSDITGGLPRVEELFEARTPDEPAVVSEIDGIVSFGDQKRGS 1163 Query: 1173 RRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRY 1232 + +++T DG M+ + + V EG+ VE GD + DG APHDIL ++G AV + Sbjct: 1164 QEVIVTSRDGDMEKSYMVSLSKHMLVHEGDYVEAGDRLCDGQIAPHDILSIKGPRAVQEH 1223 Query: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLE---------------- 1276 ++NEVQ+VYRLQGV I+DKH EV++RQM+++ I G ++FLE Sbjct: 1224 LLNEVQEVYRLQGVDIDDKHFEVVIRQMMKRVKITEPGDTNFLEEDQVDRQKMASINDDL 1283 Query: 1277 ----------------GEQVEYSRVKIANRELEANGK--------VGATYSRDLLGITKA 1312 GE + R++ N EL+ K A LLGITKA Sbjct: 1284 YDKFVVKDPSDANVEIGEVIGRRRLRELNSELKREDKPEIEVREARPAVGEPLLLGITKA 1343 Query: 1313 SLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRR 1372 SLAT+S ISAASFQETT+VLT +A+ + D L GLKENV+ G IPAGTG ++D + Sbjct: 1344 SLATDSMISAASFQETTKVLTNSAIRSRTDPLEGLKENVVAGHSIPAGTGQREYRD-LVV 1402 Query: 1373 RAAGEAPAAPQVTAEDASASLAELLNAGLGGSDNE 1407 + E D + + AG G E Sbjct: 1403 GSKSELEELQAAIGGDGESPSGDG-AAGDGAPSEE 1436 >UniRef50_C8PSU9 DNA-directed RNA polymerase n=2 Tax=Spirochaetaceae RepID=C8PSU9_9SPIO Length = 1444 Score = 1493 bits (3865), Expect = 0.0, Method: Composition-based stats. Identities = 708/1406 (50%), Positives = 943/1406 (67%), Gaps = 91/1406 (6%) Query: 13 KTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLC 72 ++FD I I LASP+ IR+WS+GEVKKPETINYRT +PERDGLFC RIFG K++EC C Sbjct: 3 DIQDFDNIMIKLASPEAIRAWSYGEVKKPETINYRTLRPERDGLFCERIFGTTKEWECYC 62 Query: 73 GKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPL 132 GK+K ++++GVIC++CGVEVT KVRRERMGHIELA+P +HIW+ +S+PSR+GLLLD+P+ Sbjct: 63 GKFKSIRYKGVICDRCGVEVTHFKVRRERMGHIELAAPVSHIWYYRSVPSRMGLLLDLPV 122 Query: 133 RDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSM 192 + VLY+E Y+VIE G T+L++ Q+L E++Y DA E +G F A MGAEA++ LL ++ Sbjct: 123 AALRSVLYYEKYIVIEPGGTDLKKNQLLNEDEYRDAQERYGGAFTANMGAEAVKTLLSNL 182 Query: 193 DLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPL 252 +L++ QLR ++ E +++ K+L KRI+++E F S NKPEWMIL V+PV+PPDLRP+ Sbjct: 183 NLDELAAQLRMKMIEKGAKSD-KRLLKRIEIVEHFRTSNNKPEWMILDVIPVIPPDLRPM 241 Query: 253 VPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRR 312 V LDGGRFATSDLNDLYRRVI+RN+RL RL+ L APDII+RNEKRMLQEAVDAL DN +R Sbjct: 242 VQLDGGRFATSDLNDLYRRVIHRNSRLTRLMSLKAPDIIIRNEKRMLQEAVDALFDNSKR 301 Query: 313 GRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKM 372 R I GS+ RPLKS++D++KGKQGRFRQNLLGKRVDYSGRSVI VGP L+L QCGLP KM Sbjct: 302 KRVIKGSSNRPLKSISDLLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLWQCGLPTKM 361 Query: 373 ALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRL 432 ALELFKPFI KL + + + IK AK MVE+E A V+ +LDEVI EHPV+LNRAPTLHRL Sbjct: 362 ALELFKPFIMKKLVQKEIVSNIKKAKLMVEQEAAPVFAVLDEVISEHPVMLNRAPTLHRL 421 Query: 433 GIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILS 492 GIQAFEPVL+EGKAI+LHPLVC +NADFDGDQMA+HVPLT AQ+E LM+S+ N+L Sbjct: 422 GIQAFEPVLVEGKAIKLHPLVCKPFNADFDGDQMAIHVPLTQAAQMECWTLMLSSRNLLD 481 Query: 493 PANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGM-VLTGPKEAERLYRSGLASLHARVKVR 551 PANG+ I+ PSQD+VLGLYY+T+ G+ + + E +G +K+ Sbjct: 482 PANGKTIVYPSQDMVLGLYYLTKQRPLKDGQHVRRYSSVSEVMMAAEAGSIGWQELLKI- 540 Query: 552 ITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRI 611 + GE V +TT GR +P+G+P VN AL K I K++ T YR Sbjct: 541 ------NYRGEEV------ETTPGRLAFNEEMPEGVP--FVNIALDDKQIRKLIETVYRT 586 Query: 612 LGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSG 671 G TV D++ G+ YA GA++ +DD++IP++K +++ +A EV I Q++ G Sbjct: 587 KGTWVTVQMLDKLKSVGYYYATFFGATLSMDDIIIPKEKSDMLEKANNEVLSIYNQYRGG 646 Query: 672 LVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGAR 731 +T ERYN+V+++W+ N+ ++ MMD L + Q FN+IYMMA SGAR Sbjct: 647 HITQEERYNRVVEVWSKTNEELTTIMMDTLAKD-----------QDGFNTIYMMATSGAR 695 Query: 732 GSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTA 791 GS QIRQLAGMRGLMAKP G IIE PI +NF+EGLNV+++FIST+GARKGLADTALKTA Sbjct: 696 GSRNQIRQLAGMRGLMAKPSGDIIELPIRSNFKEGLNVIEFFISTNGARKGLADTALKTA 755 Query: 792 NSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKP 851 ++GYLTRRLVD+AQD+VV E+DCGT GI + V G +V E L +R++G+ T E V P Sbjct: 756 DAGYLTRRLVDIAQDVVVNEEDCGTINGIEYSAVKSGDEVIESLSERIVGKYTLERVEHP 815 Query: 852 GTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINK 911 + ++L+ N + ++ +EE V VK+R+V++C++ GVC CYGR+LAR I+ Sbjct: 816 ISHELLIDVNEYITDEIAAKIEEAGVQTVKLRTVLTCESKHGVCVKCYGRNLARNKIVEI 875 Query: 912 GEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSG 971 GEA+G+IAAQSIG+PGTQLTMRTFH+GG AS E+ I K IK S+ G Sbjct: 876 GEAVGIIAAQSIGQPGTQLTMRTFHVGGTASSTTEENHITFKYPVIIKDILGTSIKLDDG 935 Query: 972 KLVITSRNTEL--------------KLIDEFGRTKESYKVPY------------------ 999 L+ T R T L ++ E G V Y Sbjct: 936 NLLFTRRGTLLFEKVLKEYTLAAGDSVVVETGVRILRDDVLYTAADGTVVKSPLNAFAYL 995 Query: 1000 ------------------GAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMI 1041 G+ + G+ V +A +DP+ P++ E GFVRF D+I Sbjct: 996 NGSTLYLTAPEQKTEIRNGSTVVIKKGDYVPATSIIATFDPYNEPILAEQDGFVRFEDII 1055 Query: 1042 DGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFL 1101 G T+ + ++ TG+ V L+P + I D GN + Y+L Sbjct: 1056 PGSTLEEEVNDETGV----VERHISELKSDMTLQPRVFISDESGNALGF--------YYL 1103 Query: 1102 PGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISG 1161 P A + +E+ QI +G +A++P+ + T+DITGGLPRV++LFEARRPK PA+LA+++G Sbjct: 1104 PDGAQLMVEEDTQIKAGTVIAKLPKAAARTQDITGGLPRVSELFEARRPKAPAVLAQVAG 1163 Query: 1162 IVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDIL 1221 VSF KGKR +++ G D Y+ ++P ++L V +G+ VE G+ + DG PHDIL Sbjct: 1164 TVSFKGLLKGKRIVIVKDHYGKD-YKHLVPMSKRLLVRDGDTVEAGERLCDGNLDPHDIL 1222 Query: 1222 RLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVE 1281 + G +A+ Y++NE++DVYR+QGV INDKHI VIVRQMLRK +V+ G + F+ G+QV+ Sbjct: 1223 AILGENALQNYLMNEIRDVYRMQGVSINDKHIGVIVRQMLRKIEVVSVGDTRFIYGQQVD 1282 Query: 1282 YSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKR 1341 N+ + A G A GITKA+L +SFISAASFQETT+VLT AA+AGK Sbjct: 1283 KYHFHAENKRVTAEGGQPAIARPMFQGITKAALNIDSFISAASFQETTKVLTNAAIAGKV 1342 Query: 1342 DELRGLKENVIVGRLIPAGTGYAYHQ 1367 DELRGLKENV++G LIPAGTG ++ Sbjct: 1343 DELRGLKENVVIGHLIPAGTGMPQYR 1368 >UniRef50_Q3KM48 DNA-directed RNA polymerase subunit beta' n=63 Tax=Bacteria RepID=RPOC_CHLTA Length = 1396 Score = 1483 bits (3838), Expect = 0.0, Method: Composition-based stats. Identities = 693/1394 (49%), Positives = 944/1394 (67%), Gaps = 61/1394 (4%) Query: 17 FDAIKIALASPDMIR-SWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKY 75 FD ++I +AS IR WS GE+KKPETINYRTFKPE+ GLFC +IFGP KD+EC CGKY Sbjct: 18 FDKLEIGIASDVTIRDKWSCGEIKKPETINYRTFKPEKGGLFCEKIFGPTKDWECYCGKY 77 Query: 76 KRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDI 135 K++KH+G++C++CGVEVT +KVRRERM HIELA P HIWF K+ PSRIG +L M D+ Sbjct: 78 KKIKHKGIVCDRCGVEVTLSKVRRERMAHIELAVPIVHIWFFKTTPSRIGNVLGMTASDL 137 Query: 136 ERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFG-DEFDAKMGAEAIQALLKSMDL 194 ERV+Y+E YVVI+ G T+L ++Q+L + +Y + +E++G D F AKMG EA+ LLKS DL Sbjct: 138 ERVIYYEEYVVIDPGNTDLVKKQLLNDAKYREVVEKWGKDAFVAKMGGEAVYDLLKSEDL 197 Query: 195 EQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVP 254 E +L+E L +T S+ R KL KR+K++E FV S N+PEWM+L +PV+PPDLRPLVP Sbjct: 198 ESLLGELKERLRKTKSQQARMKLAKRLKIVEGFVSSSNRPEWMVLKNIPVVPPDLRPLVP 257 Query: 255 LDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGR 314 LDGGRFATSDLNDLYRRVINRNNRLK +L L P++IVRNEKRMLQEAVDAL DNGR G Sbjct: 258 LDGGRFATSDLNDLYRRVINRNNRLKAILRLKTPEVIVRNEKRMLQEAVDALFDNGRHGH 317 Query: 315 AITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMAL 374 + G+ RPLKSL++M+KGK GRFRQNLLGKRVDYSGRSVI VGP L+ +QCGLPK+MAL Sbjct: 318 PVMGAGNRPLKSLSEMLKGKNGRFRQNLLGKRVDYSGRSVIIVGPELKFNQCGLPKEMAL 377 Query: 375 ELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGI 434 ELF+PFI +L+ +G TI++AKKM++R VWD+L+E+I+ HPVLLNRAPTLHRLGI Sbjct: 378 ELFEPFIIKRLKDQGSVYTIRSAKKMIQRGAPEVWDVLEEIIKGHPVLLNRAPTLHRLGI 437 Query: 435 QAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPA 494 QAFEPVLIEGKAI++HPLVCAA+NADFDGDQMAVHVPL++EAQLEA+ LMM+ +NI P+ Sbjct: 438 QAFEPVLIEGKAIRVHPLVCAAFNADFDGDQMAVHVPLSIEAQLEAKVLMMAPDNIFLPS 497 Query: 495 NGEPIIVPSQDVVLGLYYMTRDCVNAKGEG----MVLTGPKEAERLYRSGLASLHARVKV 550 +G+P+ PS+D+ LG+YY+ D E E R +G +K Sbjct: 498 SGKPVATPSKDMTLGIYYLMADPTYFPEEHGGKTKAFKDEVEVLRALNAG----GFILKD 553 Query: 551 RITEYEKDANGELVAKTS---------LKDTTVGRAILWMIVPKGLPYSIVNQALGKKAI 601 I +D G + + +TT GR IVPK L + N ++ K I Sbjct: 554 EICGSRRDETGRGIHIHEKIKVRIDGQIIETTPGRVFFNTIVPKELGFQ--NYSMPSKRI 611 Query: 602 SKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEV 661 S+++ CY+ +GL+ TV F D + GF + ++ S+G+ D+ IPE K EI+ +A +V Sbjct: 612 SELILQCYKKVGLEATVRFLDDLKELGFVQSTKAAISMGLKDVKIPEIKKEILKDAYDKV 671 Query: 662 AEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNS 721 A +++Q++ G++T GER++K I IW +D +S A+ ++ +T N Sbjct: 672 AVVKKQYEDGIITDGERHSKTISIWTEVSDLLSNALYSEIKKQTNSK----------HNP 721 Query: 722 IYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARK 781 +++M DSGARG+ +Q++QL +RGLMAKP+G+IIE+PIT+NFREGL VL+Y IS+HGARK Sbjct: 722 LFLMIDSGARGNKSQLKQLGALRGLMAKPNGAIIESPITSNFREGLTVLEYSISSHGARK 781 Query: 782 GLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLG 841 GLADTALKTA+SGYLTRRLVDVAQD+++TE DCGT I ++ + +G + PL+DRV G Sbjct: 782 GLADTALKTADSGYLTRRLVDVAQDVIITERDCGTLNHIEVSTIRQGSEELLPLKDRVYG 841 Query: 842 RVTAEDVLKPGTA-DILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYG 900 R +E++ +PG ++L +L + +++ +++VK+RS ++C++ GVCA CYG Sbjct: 842 RTVSENIYQPGDKSNVLAYAGDVLTSAQAEAIDDAGIESVKIRSTLTCESRRGVCAKCYG 901 Query: 901 RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL 960 +LA G +I GEA+G+IAAQSIGEPGTQLTMRTFH+GG A+ + + I + G + Sbjct: 902 LNLANGRLIGLGEAVGIIAAQSIGEPGTQLTMRTFHLGGIAATS-STPEIVAECDGILVY 960 Query: 961 SNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYK---------------VPYGAVLAK 1005 +++ VV+ G ++ ++ L L+ + GR+ YK V GA + Sbjct: 961 LDLRVVVDQEGNNLVLNKMGALHLVQDEGRSLSEYKKLLSTKSIESLATFPVELGAKILV 1020 Query: 1006 GDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSA 1065 DG VA G+ +A + H +P+I + GFV + D+++G + + T++ TGL L+V Sbjct: 1021 NDGAAVAAGQRIAEVELHNIPIICDKPGFVHYEDLVEGVSTEKVTNKNTGLVELIVKQHR 1080 Query: 1066 ERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIP 1125 +L P + I A N + GT Y +P AI+ +E+G +I+ G LAR+P Sbjct: 1081 ------GELHPQIAIY-ADANMKELVGT-----YAIPSGAIISVEEGQRIAPGMLLARLP 1128 Query: 1126 QESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDP 1185 + + TKDITGGLPRVA+L EAR+P++ A +A+I G+V F K KR LV+ Sbjct: 1129 RGAIKTKDITGGLPRVAELVEARKPEDAADIAKIDGVVDFKGIQKNKRILVVRDEITGME 1188 Query: 1186 YEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQG 1245 E +I + L V G+ V +G ++DG PH+IL + GV + +Y+VNEVQ+VYRLQG Sbjct: 1189 EEHLISLTKHLIVQRGDSVIKGQQLTDGLVVPHEILEICGVRELQKYLVNEVQEVYRLQG 1248 Query: 1246 VKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRD 1305 V INDKH+E+IVRQML+K I + G + L GE V+ NR E +G A Sbjct: 1249 VDINDKHVEIIVRQMLQKVRITDPGDTTLLFGEDVDKKEFYEENRRTEEDGGKPAQAVPV 1308 Query: 1306 LLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAY 1365 LLGITKASL TESFISAASFQ+TTRVLT+AA + K D L G KENVI+G +IP GTG+ Sbjct: 1309 LLGITKASLGTESFISAASFQDTTRVLTDAACSSKTDYLLGFKENVIMGHMIPGGTGFDT 1368 Query: 1366 HQDRMRRRAAGEAP 1379 H+ R+++ E Sbjct: 1369 HK-RIKQHLEKEQE 1381 >UniRef50_B2KEN0 DNA-directed RNA polymerase subunit beta' n=1 Tax=Elusimicrobium minutum Pei191 RepID=RPOC_ELUMP Length = 1385 Score = 1477 bits (3824), Expect = 0.0, Method: Composition-based stats. Identities = 718/1375 (52%), Positives = 958/1375 (69%), Gaps = 47/1375 (3%) Query: 16 EFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKY 75 +FDAIK+ +ASP+ I +WS GEVKKPETINYRT KPERDGLFC RIFGP KDYEC CGKY Sbjct: 18 DFDAIKLGIASPEQIMAWSHGEVKKPETINYRTLKPERDGLFCERIFGPTKDYECSCGKY 77 Query: 76 KRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDI 135 + +K++G+ C++CGVE+T+ KVRRERMGH+ELA P AH+WFL+ PSRIG++LDM + D+ Sbjct: 78 RWVKYKGMQCDRCGVEITEAKVRRERMGHLELAVPVAHVWFLRKNPSRIGIMLDMRITDL 137 Query: 136 ERVLYFESYVVIEG------GMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALL 189 ERV+Y+ SYVV+E G T+ ++ ++LT+ Q +A ++ G +GA A++ LL Sbjct: 138 ERVVYYASYVVVEDCIDSVTGRTDYKKGELLTDVQVREARKKHGSRLKVDIGAPAVKKLL 197 Query: 190 KSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDL 249 +D ++E L +L ET SE +R KL +RIK +E F SGN+PEWMIL+VLPV+PPDL Sbjct: 198 SDIDFDKEIPTLHVQLAETQSELERTKLIRRIKTMEEFKASGNRPEWMILSVLPVIPPDL 257 Query: 250 RPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDN 309 RPLVPLDGGRFA SDLNDLYRR+INRNNRLK + L AP++++ NEKR+LQEAVDAL++N Sbjct: 258 RPLVPLDGGRFAASDLNDLYRRIINRNNRLKHIESLRAPEVMIYNEKRLLQEAVDALIEN 317 Query: 310 GRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLP 369 G RG+ G+ RPLKSL+D+IKGK GRFRQNLLGKRVDYSGRSVI VGP L+LHQCGLP Sbjct: 318 GARGKFFIGAGGRPLKSLSDVIKGKHGRFRQNLLGKRVDYSGRSVIVVGPSLKLHQCGLP 377 Query: 370 KKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTL 429 K MALELFKPFI G+L ++ T+KAAKKM+ER +WDIL++V + HPV+LNRAPTL Sbjct: 378 KLMALELFKPFIIGEL-MKKEGVTLKAAKKMLERVRPEIWDILEQVTKNHPVMLNRAPTL 436 Query: 430 HRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNN 489 HRLGIQAFEPVLIEGKAIQLHPL CAA+NADFDGDQMAVHVPL+LEAQLEAR LM++TNN Sbjct: 437 HRLGIQAFEPVLIEGKAIQLHPLTCAAFNADFDGDQMAVHVPLSLEAQLEARTLMLATNN 496 Query: 490 ILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVK 549 ILSPA+G PI PS D+V+G+ ++T+ +N GEG V +EA Y G SLHAR+K Sbjct: 497 ILSPASGRPIAAPSHDIVMGISFLTKVKLNDFGEGAVFGSMEEALMAYAYGKVSLHARIK 556 Query: 550 VR-ITEYEKDA--NGELVAKTSLKD-TTVGRAILWMIVPKGLPYSIVNQALGKKAISKML 605 VR IT ++D +L + KD TTVG+ I +P+G P VN A+GKK ++ ++ Sbjct: 557 VRGITAIKEDGMNEKDLKNVNTWKDYTTVGKIIFNNNLPEGWP--YVNGAVGKKELAAII 614 Query: 606 NTCYR--ILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAE 663 + CY+ G TV D+IM G+ YA RSG S+ I DM++P K + I A+ + E Sbjct: 615 DECYKSKKYGKYETVQLLDRIMKLGYNYATRSGLSISIADMIVPAAKQKYIDAAKKRIKE 674 Query: 664 IQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIY 723 IQ Q ++G++T GERYNKVIDIW D V+ ++ G+ ++ FNS++ Sbjct: 675 IQGQAEAGIITEGERYNKVIDIWTRVTDDVAVEQFKEMKKFEEAPYSGEGQR---FNSVF 731 Query: 724 MMADSGARGSAAQIRQLAGMRGLMAKPD-------GSIIETPITANFREGLNVLQYFIST 776 +MADSGARGS Q+RQLAGMRGLMAKP G IIE+PIT+NFREGL+VL+YFIST Sbjct: 732 LMADSGARGSRQQVRQLAGMRGLMAKPQKKLTGGQGEIIESPITSNFREGLSVLEYFIST 791 Query: 777 HGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLR 836 HG RKGL+DTALKTA +GYLTRRL+DVA +LVV E+DCGT G++++ ++ G +V EP+ Sbjct: 792 HGGRKGLSDTALKTAEAGYLTRRLIDVAHNLVVMEEDCGTTNGVVVSSLMSGEEVVEPIE 851 Query: 837 DRVLGRVTAEDVLKPGTA-------DILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCD 889 +R+LGR + EDV+ ++ + + L+++ V +++RSV++C+ Sbjct: 852 ERILGRTSLEDVIVKIKKADGKEEEKTIIKEGDSITLEQSKLVKKYGVQNLRIRSVLTCE 911 Query: 890 TDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESS 949 + GVC CYG L G+I N G+++G+IAAQSIGEPGTQLT+RTFHIGGAASR ++S Sbjct: 912 SKNGVCGKCYGVSLVSGNISNVGDSVGIIAAQSIGEPGTQLTLRTFHIGGAASRMLSQSQ 971 Query: 950 IQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGE 1009 + G + ++K + N + SRN + + G KE YK+ YGA L D Sbjct: 972 AVAELGGKVTFKDIKVITNRFDNKICISRNGAIFVEAANGTIKE-YKIQYGATLHIADKV 1030 Query: 1010 QVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTA 1069 V G +A WDPH++PV++E G R TD+ +G T+ + +++TG+ + S Sbjct: 1031 TVEKGTLMAEWDPHSIPVLSETEGTARLTDVSEGITLQEERNKVTGVIERKITASR---- 1086 Query: 1070 GGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESG 1129 P + I G V +P LP I+ +E+G + +GD LA+I + SG Sbjct: 1087 -MGKKNPRIVIEGKGGKKVSLP---------LPVDTILLVENGEDVLAGDILAKIAKASG 1136 Query: 1130 GTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEM 1189 GTKDIT GLPR+A+LFEAR+P+ AI++E +G+VS KG +V+ + + Sbjct: 1137 GTKDITSGLPRIAELFEARKPRNAAIMSEFAGVVSLETSPKGLVEIVVRSEETGQVKQYA 1196 Query: 1190 IPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKIN 1249 +P+ + L V+EG+ V G+ ++DG PHD+LR++G+ V +++N +Q+VYRLQGV IN Sbjct: 1197 VPQGKHLVVYEGDHVGVGEALTDGAIDPHDVLRVKGIKEVQEFLLNAIQEVYRLQGVTIN 1256 Query: 1250 DKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGI 1309 D+HIEVIVRQML IV+AG + L+GE V + + N + E GK A LLGI Sbjct: 1257 DRHIEVIVRQMLGNVKIVDAGDTPLLKGEIVSRATLLKHNAQAEKEGKKIAVGDPILLGI 1316 Query: 1310 TKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 +KASLA++SFISAASFQETT+VLT+AA+ G+ D L+GLKENVIVG LIPAGTG + Sbjct: 1317 SKASLASDSFISAASFQETTKVLTDAAITGQVDTLQGLKENVIVGHLIPAGTGIS 1371 >UniRef50_Q8RHI7 DNA-directed RNA polymerase subunit beta' n=22 Tax=Bacteria RepID=RPOC_FUSNN Length = 1319 Score = 1467 bits (3797), Expect = 0.0, Method: Composition-based stats. Identities = 665/1370 (48%), Positives = 927/1370 (67%), Gaps = 58/1370 (4%) Query: 14 TEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCG 73 F+ I+I LASP+ I WS GEV KPETINYRT PERDGLFC IFGP KD+EC CG Sbjct: 3 IRNFEKIRIKLASPEKILEWSHGEVTKPETINYRTLNPERDGLFCEIIFGPTKDWECSCG 62 Query: 74 KYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLR 133 KYKR++++G++CEKCGVEVT+ KVRRERMGHI LASP +HIW+ K P+++ L++ + + Sbjct: 63 KYKRMRYKGLVCEKCGVEVTRAKVRRERMGHITLASPVSHIWYSKGSPNKMSLIIGISSK 122 Query: 134 DIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMD 193 ++E VLYF Y+V + +E +ILTE++Y + +G++F+A MGA+ I LL ++D Sbjct: 123 ELESVLYFARYIVTSSQESTVEVGKILTEKEYKLLKQLYGNKFEAYMGADGILKLLTAID 182 Query: 194 LEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLV 253 LE+ ++L EL E NS KRKKL KR+K++ F+ SGN+PEWMILT +PV+P +LRP+V Sbjct: 183 LEKLRDELENELAEANSAQKRKKLVKRLKIVRDFIASGNRPEWMILTNVPVIPAELRPMV 242 Query: 254 PLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRG 313 LDGGRFATSDLNDLYRRVINRNNRLK+LL++ AP+I+V+NEKRMLQEAVDAL+DNGRRG Sbjct: 243 QLDGGRFATSDLNDLYRRVINRNNRLKKLLEIRAPEIVVKNEKRMLQEAVDALIDNGRRG 302 Query: 314 RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMA 373 + + N R LKSL+DM+KGKQGRFRQNLLGKRVDYS RSVI VGP L+++QCG+PKKMA Sbjct: 303 KPVVAQNNRELKSLSDMLKGKQGRFRQNLLGKRVDYSARSVIVVGPSLKMNQCGIPKKMA 362 Query: 374 LELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLG 433 LEL+KPFI +L R LA IK AKK+VE + VW ++++VI +HPVLLNRAPTLHRL Sbjct: 363 LELYKPFIMRELVRRELANNIKMAKKLVEESDDKVWAVIEDVIADHPVLLNRAPTLHRLS 422 Query: 434 IQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSP 493 IQAF+PVLIEGKAI+LHPLVC+A+NADFDGDQMAVH+ L+ E+ +EA+ LM + NNI+SP Sbjct: 423 IQAFQPVLIEGKAIRLHPLVCSAFNADFDGDQMAVHLTLSPESMMEAKLLMFAPNNIISP 482 Query: 494 ANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRIT 553 ++GEPI VPSQD+V+G +YMT++ KGEG + + ++ Y++ HA +KVR+ Sbjct: 483 SSGEPIAVPSQDMVMGCFYMTKERPGEKGEGKLFSNIEQVITAYQNDKVGTHALIKVRM- 541 Query: 554 EYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILG 613 NGEL+ +TT GR + I+P+ ++ GKK I ++ + Y G Sbjct: 542 ------NGELI------ETTPGRVLFNEILPEIDRNY--HKTYGKKEIKSLIKSLYEAHG 587 Query: 614 LKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLV 673 T +++ G+ Y +G SVGI+D+ +P KK ++++A+ EVA+I + ++SG + Sbjct: 588 FTETAELINRVKNFGYHYGTFAGVSVGIEDLEVPPKKKSLLNQADKEVAQIDKDYKSGKI 647 Query: 674 TAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGS 733 ERY K I++W+ + V+ AMM NL FN +YMMA SGARG+ Sbjct: 648 INEERYRKTIEVWSRTTEAVTDAMMKNLDE---------------FNPVYMMATSGARGN 692 Query: 734 AAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANS 793 +Q+RQLAGMRG MA G IE PI ANFREGL VL++F+S+HGARKGLADTAL+TA+S Sbjct: 693 VSQMRQLAGMRGNMADTQGRTIEVPIKANFREGLTVLEFFMSSHGARKGLADTALRTADS 752 Query: 794 GYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVI-EGGDVKEPLRDRVLGRVTAEDVLKPG 852 GYLTRRLVD++ +++V E+DC THEGI + ++ G + E L +R+ GRV AED++ G Sbjct: 753 GYLTRRLVDISHEVIVNEEDCHTHEGIEVEALVGANGKIIEKLSERINGRVLAEDLVHKG 812 Query: 853 TADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKG 912 + RNT++H+ D +EE + VK+RS ++C + GVC CYG DL+ + I G Sbjct: 813 KK--IAKRNTMIHKDLLDKIEELGIKKVKIRSPLTCALEKGVCQKCYGMDLSNYNEILLG 870 Query: 913 EAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGK 972 EA+GV+AAQSIGEPGTQLTMRTFH GG A A +S + +N G + ++K++ +G+ Sbjct: 871 EAVGVVAAQSIGEPGTQLTMRTFHTGGVAGAATVVNSKKAENDGEVSFRDIKTI-EINGE 929 Query: 973 LVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVS 1032 V+ S+ ++ + D ++V G+V+ +G++V G+ + +DP+ +P+I+ Sbjct: 930 DVVVSQGGKIIIADN------EHEVDSGSVIRVTEGQKVKEGDVLVTFDPYHIPIISSHD 983 Query: 1033 GFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPG 1092 G V++ T DE + +V+ R+ D P + I+D + + Sbjct: 984 GKVQYRHF----TPKNIRDEKYDVHEYLVV----RSVDSVDSEPRVHILDKKNEKL---- 1031 Query: 1093 TDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKE 1152 A Y +P A + + DG ++ GD +A+I + GTKDITGGLPRV +LFEAR PK Sbjct: 1032 ----ATYNIPYGAYMMVRDGAKVKKGDIIAKIIKLGEGTKDITGGLPRVQELFEARNPKG 1087 Query: 1153 PAILAEISGIVSFGKETKGKRRLVITP--VDGSDPYEEMIPKWRQLNVFEGERVERGDVI 1210 A LAEI G + K + R+V + + E +IP +L V +G +++ GD I Sbjct: 1088 KATLAEIDGRIEILTTKKKQMRVVNVRSLENPEEFKEYLIPMGERLVVTDGLKIKAGDKI 1147 Query: 1211 SDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAG 1270 ++G +P+D+L ++G+ A ++I+ VQ VYR QGV +NDKHIE+IV+QM RK I+++G Sbjct: 1148 TEGAISPYDVLNIKGLVAAEQFILESVQQVYRDQGVTVNDKHIEIIVKQMFRKVRIIDSG 1207 Query: 1271 SSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTR 1330 +S FLE E +E V + N++LE GK Y + GITKA++ T SFISAASFQETT+ Sbjct: 1208 ASLFLEDEVIEKRVVDLENKKLEEQGKALIKYEPVIQGITKAAVNTGSFISAASFQETTK 1267 Query: 1331 VLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPA 1380 VL+ AA+ GK D L GLKENVI+G+ IPAGTG+ ++ R + P Sbjct: 1268 VLSNAAIEGKVDYLEGLKENVILGKKIPAGTGFNKYKSIKVRYNTDDKPE 1317 >UniRef50_B0SAG0 DNA-directed RNA polymerase subunit beta' n=33 Tax=Bacteria RepID=RPOC_LEPBA Length = 1433 Score = 1466 bits (3795), Expect = 0.0, Method: Composition-based stats. Identities = 684/1409 (48%), Positives = 922/1409 (65%), Gaps = 101/1409 (7%) Query: 15 EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74 F++I I LASP+ I+ WSFGEVKKPETINYRT KPERDGLFC +IFG KD+EC CGK Sbjct: 5 NSFESITIRLASPERIKEWSFGEVKKPETINYRTLKPERDGLFCEKIFGTTKDWECYCGK 64 Query: 75 YKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRD 134 +K ++++GV+C+KCGVEVT +KVRRERMGHIELA+P +HIW+ +S+PSR+GLLLDM + Sbjct: 65 FKSIRYKGVVCDKCGVEVTHSKVRRERMGHIELAAPVSHIWYYRSVPSRMGLLLDMTINQ 124 Query: 135 IERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDL 194 ++ VLYFE YV+I+ + R +++ E++Y + L+E+GD+F A +G +AI+ LL +D+ Sbjct: 125 LKSVLYFEKYVIIDPADSGRNRGELIDEDEYHNYLDEYGDKFIAGIGGDAIKELLARIDV 184 Query: 195 EQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVP 254 + E +R+++ + N + K++ KR+++LEAF SGN+PEWM+L V+PV+PP+LRP+V Sbjct: 185 DAEARVIRQKIQDKNKISD-KRIFKRLEVLEAFRDSGNRPEWMVLDVVPVIPPELRPMVQ 243 Query: 255 LDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGR 314 L+GGRFATSDLNDLYRRVINRNNRLKRLL L AP+IIVRNEKRMLQEAV AL DN RR R Sbjct: 244 LEGGRFATSDLNDLYRRVINRNNRLKRLLALKAPEIIVRNEKRMLQEAVGALFDNSRRKR 303 Query: 315 AITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMAL 374 + G RPLKS++DM+KGKQGRFRQNLLGKRVDYSGRSVI VGP L+ HQ GLPKKMAL Sbjct: 304 TVKGKGNRPLKSISDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKYHQMGLPKKMAL 363 Query: 375 ELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGI 434 ELFKPFI +L LA IK+AKK +E E+ V+D+L+ V++EHPVLLNRAPTLHRLGI Sbjct: 364 ELFKPFIMKRLVDLELAPNIKSAKKKIEAEDKEVFDVLETVVKEHPVLLNRAPTLHRLGI 423 Query: 435 QAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPA 494 QAF PVL+EGKAI+LHPLVC A+NADFDGDQMA+HVPL +AQLE LM+S +NIL+PA Sbjct: 424 QAFLPVLVEGKAIKLHPLVCHAFNADFDGDQMAIHVPLAPKAQLETWMLMLSPHNILNPA 483 Query: 495 NGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITE 554 NG+PI P+QD+VLG+YY+T + +AKGEG TG +E + + +++ V Sbjct: 484 NGQPICGPTQDIVLGIYYLTSEVKDAKGEGKFFTGLEEVMYAIETKTVEIRSKISV---- 539 Query: 555 YEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGL 614 + + + +TT GR I ++PKG Y +N+ LG K +K++ Y G Sbjct: 540 ---------LHEGKIIETTPGRLIFNQVMPKG--YVYINRTLGDKETNKIIADVYEKFGP 588 Query: 615 KPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVT 674 TV+ D+I G+ YA ++ IDD+ + +K ++++A EV + +++ G++T Sbjct: 589 GITVVMLDEIKRLGYRYATVFAPTISIDDIRVSPQKEGLVNDANKEVEKADMEYRKGIIT 648 Query: 675 AGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSA 734 ER KVI+IW NDR+++ M L+ + Q FN +Y+MA SGARGS Sbjct: 649 NEERRKKVIEIWTKTNDRITEGMFKELEKD-----------QAGFNPVYVMAASGARGSK 697 Query: 735 AQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSG 794 QIRQLAGMRGLMAKP G IIE I +NFREGL VL++FISTHGARKGLADTALKTA++G Sbjct: 698 QQIRQLAGMRGLMAKPSGEIIELAIRSNFREGLGVLEFFISTHGARKGLADTALKTADAG 757 Query: 795 YLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTA 854 YLTRRLVD++QD++V+EDDCGT I + V EG +V L DRV GR TAED++ P T Sbjct: 758 YLTRRLVDISQDVIVSEDDCGTKANITLGIVKEGENVIVSLADRVFGRYTAEDLVDPVTE 817 Query: 855 DILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEA 914 ++ P++TL+ +E D +KVRS ++C + G+C CYG D+AR GEA Sbjct: 818 KVVFPKDTLITRALGQQIENLGYDKIKVRSPLTCRSRHGICTKCYGMDMARLVPAEIGEA 877 Query: 915 IGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLV 974 +G IAAQSIG+PGTQLTMRTFH+GGAAS E +V + +K N + V N++G V Sbjct: 878 VGTIAAQSIGQPGTQLTMRTFHVGGAASATIQEKEHKVPFRSLVKSINGRLVTNANGSKV 937 Query: 975 ITSRNTEL--KLIDEFGRTKES-------------------------------------- 994 R T + +LI EF S Sbjct: 938 FARRGTIIVNRLIQEFNTESLSSVRIVDGQRLEKGEVFASQVGESIEQRITSDQAGTVSL 997 Query: 995 -------------YKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMI 1041 V G +L +G+ V + +A +DP+ ++E +G + + D+ Sbjct: 998 IGTTLRILGDDIVIPVKIGTILKSEEGQIVEENKALAEFDPYNEVAVSETAGTIVWEDLE 1057 Query: 1042 DGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFL 1101 G+ + R D T L V++ KD IV + G Y + Sbjct: 1058 IGKNVRRDVDPKTSNIILKVVEQK------KDRLVPKVIVGSDG-------------YSV 1098 Query: 1102 PGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISG 1161 P A++Q ++G ++ GD + +IP + T+DITGGLPRV +LFEARRPK+ LAEI G Sbjct: 1099 PVDALLQFQNGDKVREGDVIFKIPSVAEKTRDITGGLPRVDELFEARRPKDACTLAEIDG 1158 Query: 1162 IVSFGKETKGKRRLVITPVDG--SDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHD 1219 + E ++R++ D + + IP +Q+ V +G+ V+RGD + +G PHD Sbjct: 1159 KIEDKGEIVKEKRILYILPDSPEQEKVKVAIPIGKQIRVRQGDFVKRGDQLDEGNFDPHD 1218 Query: 1220 ILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQ 1279 IL ++G A+ Y+V+EVQ+VYRLQGV INDKHIEV+VR MLRK I ++G + F+ +Q Sbjct: 1219 ILAIKGPSALHEYLVSEVQEVYRLQGVHINDKHIEVVVRSMLRKVIITDSGDTSFVNQQQ 1278 Query: 1280 VEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAG 1339 V+ N +E G A + LLG+TKASL TES+ SAASFQETT+VLT+AA+ G Sbjct: 1279 VDKFLFDEENDRVEQEGGSPAQGTPVLLGLTKASLNTESYFSAASFQETTKVLTDAAIKG 1338 Query: 1340 KRDELRGLKENVIVGRLIPAGTGYAYHQD 1368 K D L GLKENVI+G +IPAGTG ++D Sbjct: 1339 KTDNLMGLKENVIIGHMIPAGTGMKKYRD 1367 >UniRef50_Q3ATP4 DNA-directed RNA polymerase subunit beta' n=12 Tax=Chlorobiaceae RepID=RPOC_CHLCH Length = 1502 Score = 1442 bits (3733), Expect = 0.0, Method: Composition-based stats. Identities = 675/1512 (44%), Positives = 942/1512 (62%), Gaps = 159/1512 (10%) Query: 16 EFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKY 75 +F IK ++ASP+ I + S GEV KPETINYRTFKPERDGL C +IFGP KD+EC CGKY Sbjct: 13 DFSRIKFSIASPESILAHSRGEVLKPETINYRTFKPERDGLMCEKIFGPTKDWECYCGKY 72 Query: 76 KRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDI 135 KR++++G+IC++CGVEVT VRRERMGHI LA P H WF +S+PS+IG LLD+ +++ Sbjct: 73 KRVRYKGIICDRCGVEVTTKSVRRERMGHISLAVPVVHTWFFRSVPSKIGALLDLSTKEL 132 Query: 136 ERVLYFESYVVIEGGMTN----LERQQILTEEQYLDALEEFGD----------EFDAKMG 181 ER++Y+E YVVI G +++ LTEEQY + E+ D +F AKMG Sbjct: 133 ERIIYYEVYVVINPGEPGEKQGIKKLDRLTEEQYFQIITEYEDNQDLDDHDPNKFVAKMG 192 Query: 182 AEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQS----------- 230 EAI LLK++DL++ LR L E+NSE KR KR+K++E+F +S Sbjct: 193 GEAIHMLLKNIDLDETAVHLRTVLRESNSEQKRTDALKRLKVVESFRKSYEPHKKSRKKP 252 Query: 231 ----------------GNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVIN 274 GNKPE+M++ V+PV+PP+LRPLVPL+GGRFATSDLNDLYRRVI Sbjct: 253 NALFAEDDMPEPYVYEGNKPEYMVMEVIPVIPPELRPLVPLEGGRFATSDLNDLYRRVII 312 Query: 275 RNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAI-TGSNKRPLKSLADMIKG 333 RNNRLK+L+D+ AP++I+RNEKRMLQEAVDAL DN R+ A+ TG + RPLKSL+D +KG Sbjct: 313 RNNRLKKLIDIRAPEVILRNEKRMLQEAVDALFDNSRKANAVKTGESNRPLKSLSDALKG 372 Query: 334 KQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATT 393 KQGRFRQNLLGKRVDYSGRSVI VGP L+LH+CGLPK MA+ELF+PF+ +L RG+A + Sbjct: 373 KQGRFRQNLLGKRVDYSGRSVIVVGPELKLHECGLPKSMAIELFQPFVIRRLVDRGIAKS 432 Query: 394 IKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLV 453 +K+AKK+++R++ VVWD+L++VI PV+LNRAPTLHRLGIQAF+P L+EGKAIQ+HPLV Sbjct: 433 VKSAKKLIDRKDPVVWDVLEKVIDGRPVMLNRAPTLHRLGIQAFQPHLVEGKAIQIHPLV 492 Query: 454 CAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYM 513 C A+NADFDGDQMAVH+PL+ EAQLEA LM+S +N++ P +G+P+ VPSQD+VLG+YY+ Sbjct: 493 CTAFNADFDGDQMAVHIPLSQEAQLEASLLMLSAHNLILPQSGKPVTVPSQDMVLGMYYL 552 Query: 514 TRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRI---------------TEYEKD 558 T+ GEG + +E Y L LHA++ +R T E Sbjct: 553 TKSRGGEMGEGRIFYSAEEVRIAYNEQLVGLHAQIFMRYDGQVDQKFDAIRVMETFVEPT 612 Query: 559 ANGELVAKTSLKD-----TTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILG 613 + + L + TTVGR I VP+ + +N+ + KK +++ +G Sbjct: 613 SEKAAWLRKQLDEKRMVLTTVGRVIFNQHVPESI--GFINRVIDKKVAKELIGRLSSEVG 670 Query: 614 LKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLV 673 T F D I GF YA + G SVG+ D ++PE K + I A+ + ++ +++ G + Sbjct: 671 NVETAKFLDNIKEVGFHYAMKGGLSVGLSDAIVPETKAKHIKNAQRDSTKVVKEYNRGTL 730 Query: 674 TAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGS 733 T ERYN+++D+W ++ V++ L+ + + FN +YMM DSGARGS Sbjct: 731 TDNERYNQIVDVWQKTSNIVAEESYQKLKRD-----------REGFNPLYMMLDSGARGS 779 Query: 734 AAQIRQLAGMRGLMAKPD-------GSIIETPITANFREGLNVLQYFISTHGARKGLADT 786 Q+RQL GMRGL+A+P G IIE PI +N +EGL VL+YFISTHGARKGL+DT Sbjct: 780 REQVRQLTGMRGLIARPQKSMSGQPGEIIENPIISNLKEGLTVLEYFISTHGARKGLSDT 839 Query: 787 ALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGD-VKEPLRDRVLGRVTA 845 +LKTA++GYLTRRL DVAQD++VT DDCGT G+ + IE + R+++ GRV A Sbjct: 840 SLKTADAGYLTRRLHDVAQDVIVTIDDCGTTRGLYVHRNIEEETSGQIKFREKIKGRVAA 899 Query: 846 EDVLKPGTADILVPRNTLLHEQWCDLL-EENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA 904 D++ T ++LV ++ E+ D + E V+ ++RSV++C++ G+C+ CYG +L+ Sbjct: 900 RDIVDTVTGNVLVQAGEIITEELADSIQETAGVEEAEIRSVLTCESKVGICSKCYGTNLS 959 Query: 905 RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVK 964 ++ GEA+GVIAAQSIGEPGTQLT+RTFH GGAA +E+ + G ++ +VK Sbjct: 960 VHQLVEIGEAVGVIAAQSIGEPGTQLTLRTFHQGGAAQGGISETETKAFCDGQVQFEDVK 1019 Query: 965 SV----VNSSG----KLVITSRNTELKLID-EFGRTKESYKVPYGAVLAKGDGEQVAGGE 1015 +V +N G + ++ +N ++ +ID E G+ + Y +P+GA LA DG V + Sbjct: 1020 TVAHTAMNEDGMEDVRTIVIQKNGKINIIDSESGKLLKRYMLPHGAHLACEDGVLVKKDQ 1079 Query: 1016 TVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLR 1075 + +P++ +I E+ G ++F D+ G T + D TG S +++ + + Sbjct: 1080 VLFRSEPNSTQIIAELPGTIKFADIEKGVTYKEEVDPQTGFSQHTIINWRTKLRATETRE 1139 Query: 1076 PALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGT-KDI 1134 P L I+D G + Y +P K+ + +EDG ++ GD LA++P+ DI Sbjct: 1140 PRLLILDENGE--------VRKTYPVPIKSNLYVEDGQKVLPGDILAKVPRNLDRVGGDI 1191 Query: 1135 TGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWR 1194 T GLP+V +LFEAR P +PAI++EI G VSFG + + + + + G + + + Sbjct: 1192 TAGLPKVTELFEARIPTDPAIVSEIDGYVSFGAQRRSSKEIKVKNDFGEEKV-YYVQVGK 1250 Query: 1195 QLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQ-GVKINDKHI 1253 + EG+ V+ GD ++DG +P DILR++G +AV +Y+VNE+Q VY++ GV+INDKH+ Sbjct: 1251 HVLANEGDEVKAGDPLTDGAVSPQDILRIQGPNAVQQYLVNEIQKVYQINAGVEINDKHL 1310 Query: 1254 EVIVRQMLRKATIVNAGSSDFLEGEQVE-------------------------------- 1281 EVIVRQML+K I G +D L G+ ++ Sbjct: 1311 EVIVRQMLQKVRIEEPGDTDLLPGDLIDRSAFIEANRAISEKVRISERGDAPARIQENQL 1370 Query: 1282 --YSRVKIANRELEANGKVGATYS--------RDLLGITKASLATESFISAASFQETTRV 1331 + NREL N K Y LLGIT A+L TES ISAASFQETT+V Sbjct: 1371 HKLRDITKLNRELRKNSKKMVAYEPALQATSHPVLLGITSAALQTESVISAASFQETTKV 1430 Query: 1332 LTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQ-------------DRMRRRAAGEA 1378 LT+AAVAGK D L GLKENVIVG+LIPAGTG ++ + + EA Sbjct: 1431 LTDAAVAGKVDYLVGLKENVIVGKLIPAGTGLKKYKTIKLVGEESAPAPVVVEAVVSHEA 1490 Query: 1379 PAAPQVTAEDAS 1390 A+P V E A Sbjct: 1491 EASPMVEEEVAE 1502 >UniRef50_C9RQN4 DNA-directed RNA polymerase n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQN4_FIBSS Length = 1478 Score = 1435 bits (3714), Expect = 0.0, Method: Composition-based stats. Identities = 693/1507 (45%), Positives = 939/1507 (62%), Gaps = 143/1507 (9%) Query: 10 AQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYE 69 A+ TE+F I I LASPD+IR WS+GEV KPETINYR+FKPE+DGLFC +IFGPVK++E Sbjct: 2 AEEMTEQFGDISIHLASPDLIRYWSYGEVTKPETINYRSFKPEKDGLFCEKIFGPVKNWE 61 Query: 70 CLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTA----------------- 112 C CGK+KR++++GVIC++CGVEVT +KVRRERMGHIELA P Sbjct: 62 CNCGKFKRIRYKGVICDRCGVEVTHSKVRRERMGHIELAIPLTHTWFVRNQPCVIGALLN 121 Query: 113 -------HIWF------------------------------------LKSLPSRIGLLLD 129 HI + K S I LLD Sbjct: 122 LNTKDLDHIIYYEKYVVIDPGTTDLEPNSLIDEAQYQDLVAEGREFEAKMGASAIKQLLD 181 Query: 130 -MPLRDIERVLYFESYVVIEGGMTNLERQQILTE---EQYLDALEEFGDEFDAKMGA--- 182 + L + L ++ + + ++ + E + +++ + D A Sbjct: 182 RVDLTKLSEELRLQATSKSKTKQDDAVKRLKVVEAFKKSQMESFRSYYKNPDPARDASKA 241 Query: 183 --EAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT 240 + + + ++ E + L + E + K + N+P WMIL Sbjct: 242 WLKGLAEAVAEFKVDYEAKHSDFVLADAYEEFRHKYPNEA-------RLLANQPSWMILD 294 Query: 241 VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ 300 VLPV+PPDLRPLVPL+GGRFATSDLN+LYRRVINRNNRLK+L+D+ AP++I+ NEKRMLQ Sbjct: 295 VLPVIPPDLRPLVPLEGGRFATSDLNELYRRVINRNNRLKKLIDIRAPNVILCNEKRMLQ 354 Query: 301 EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360 EAVD L D+GRR + RPLKSLA+++KGKQGRFR NLLGKRVDYSGRSVI VGP Sbjct: 355 EAVDQLFDSGRR--TARAGSARPLKSLAELLKGKQGRFRMNLLGKRVDYSGRSVIVVGPE 412 Query: 361 LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP 420 LR+HQCGLPK+MALEL+KPFI +LE G+ T+K+AKK V+ E VWDIL+++I +HP Sbjct: 413 LRMHQCGLPKRMALELYKPFIIQRLEEEGIVYTLKSAKKYVDAERPEVWDILEQIIEDHP 472 Query: 421 VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480 V+LNRAPTLHRLGIQAF P LIEG AI+LHPLVC A+NADFDGDQMA H+PL+ E QLE Sbjct: 473 VMLNRAPTLHRLGIQAFYPKLIEGNAIRLHPLVCTAFNADFDGDQMACHLPLSFETQLEC 532 Query: 481 RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSG 540 R LM+S+NNIL PA+G+PI VP QD+VLGLYY+T+ N KGEGM P EA R Y + Sbjct: 533 RVLMLSSNNILHPASGQPIAVPGQDIVLGLYYLTKPRPNRKGEGMHFYDPAEAVRAYEND 592 Query: 541 LASLHARVKVRITEYEK-----------------DANGEL---------VAKTSLKD--- 571 + L+A V +++ K D NG L + +LK+ Sbjct: 593 VVDLNANVYLKLPAGRKIYMGALEKDCTCIREMADDNGNLEVQVKAGEKIKFLTLKEDNV 652 Query: 572 --TTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGF 629 TTVGR I VP L N+ GKK I+K ++ YR G + TV + D + G+ Sbjct: 653 IKTTVGRIIFNEFVPNAL--GYANETFGKKVIAKSIDDLYRRTGNRVTVDYLDDLKANGY 710 Query: 630 AYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAA 689 +A R+G+SV I +MVIP++K E++ +A +V++I+ ++ G++T GERYN+ ID+W+ Sbjct: 711 KWATRAGSSVAIAEMVIPKEKQEMLDKAAEQVSKIRALYEDGVITDGERYNQTIDVWSKT 770 Query: 690 NDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAK 749 V+ D L + + FN +YMMADSGARGS QI+QL+GMRGLM K Sbjct: 771 TSDVAAKQWDLLSHD-----------RDGFNPVYMMADSGARGSREQIKQLSGMRGLMQK 819 Query: 750 P-----DGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVA 804 P +IE PI + FREGLNV++YFIS+HGARKGLADTALKTA++GYLTRRLVDV Sbjct: 820 PIKQLGGQEVIENPIKSCFREGLNVMEYFISSHGARKGLADTALKTADAGYLTRRLVDVG 879 Query: 805 QDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLL 864 QDLV+TE DCGT GI ++ +G D PL +R+LGR +D+ P T +++V L+ Sbjct: 880 QDLVITEPDCGTTNGIEVSAFKDGDDTVIPLEERLLGRAPVDDIKHPVTGEVIVKAGELV 939 Query: 865 HEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIG 924 E+ + ++ +K+RSV++CD+ GVCA CYGR LA G ++ GEA+GV+AAQSIG Sbjct: 940 TERDLPKISATGLEHIKMRSVLTCDSKTGVCAKCYGRMLASGRPVDLGEAVGVLAAQSIG 999 Query: 925 EPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKL 984 EPGTQLT+RTFHIGGA+SR ES + G I+L V++V + G+ V+ SR EL + Sbjct: 1000 EPGTQLTLRTFHIGGASSRLTVESDKKATVDGHIELEQVETV-DHEGQKVVVSRMGELVI 1058 Query: 985 IDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQ 1044 D G K Y++PYGA+L + V GE++ WDP+ P+IT VSG + F+++I+ + Sbjct: 1059 FDTTGINKGRYQIPYGAILHVENNATVKKGESMFEWDPYNSPIITNVSGTIAFSNLIENR 1118 Query: 1045 TITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGK 1104 T + DE+T + + +V+ + G LRP + I D +G V + LP Sbjct: 1119 TYRIERDEMTDVETWIVISDKQ--HGKNQLRPVIVINDDRGEKV--------GHFMLPDG 1168 Query: 1105 AIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVS 1164 AI+ + G +++SG +A++P+ +G T+DITGGLPRVA+LFEAR PK A +A + G+V Sbjct: 1169 AILAVHQGDRVTSGQVIAKLPRAAGKTRDITGGLPRVAELFEARVPKNKAFIAPVDGLVK 1228 Query: 1165 FGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLR 1224 +G E + + ++I +DG++ + ++P+ L V +G+RV G IS+G PHDIL + Sbjct: 1229 YGNEVRNNQEVIIQQMDGNE-VKVLVPRGIHLAVNDGDRVRAGQKISEGSVDPHDILDVL 1287 Query: 1225 GVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSR 1284 G V R++VNE+Q VYRLQGV I DKHIE IVRQM+RK I + G S+FL GE++ R Sbjct: 1288 GPEDVQRHLVNEIQAVYRLQGVAIADKHIECIVRQMMRKVRITDPGESEFLPGEEISKIR 1347 Query: 1285 VKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDEL 1344 ++ N L A GK A Y LLGITKASLAT+SFISAASFQET ++LT A++ G D L Sbjct: 1348 LRTENERLRALGKDEAKYQPMLLGITKASLATDSFISAASFQETQKILTRASIEGCVDPL 1407 Query: 1345 RGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQVTAEDASASLA----ELLNAG 1400 GLKENVI+GRLIP GTG + ++ A + +V + A ++ + Sbjct: 1408 MGLKENVIMGRLIPCGTGARHLRNVQVIDADADEMEERRVQSAPAENYETGTGIQMQDNE 1467 Query: 1401 LGGSDNE 1407 +G SD E Sbjct: 1468 IGASDEE 1474 >UniRef50_A3EVS7 DNA-directed RNA polymerase n=9 Tax=Bacteria RepID=A3EVS7_9BACT Length = 1585 Score = 1373 bits (3553), Expect = 0.0, Method: Composition-based stats. Identities = 702/1261 (55%), Positives = 911/1261 (72%), Gaps = 41/1261 (3%) Query: 146 VIEGGMTNLERQQILTEEQYLDALEEFGD-EFDAKMGAEAIQALLKSMDLEQECEQLRE- 203 + E + +R + +++E++ EF ++GAEAI+ LLK+++LE+ ++ Sbjct: 351 MREDLELDFKRHRPISKEEFERYKREFPRSNMKGEIGAEAIRTLLKNLNLEELATEMHAL 410 Query: 204 ELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATS 263 L+ S +KK++KR+K++EAF +SGN+PEWMIL V+PVLPPDLRPLVPLDGGRFATS Sbjct: 411 MLDPAVSSASKKKISKRLKIVEAFRKSGNRPEWMILDVIPVLPPDLRPLVPLDGGRFATS 470 Query: 264 DLNDLYRRVINRNNRLKRLLDLAAPD--IIVRNEKRMLQEAVDALLDNGRRGRAITGSNK 321 DLNDLYRRVINRNNRLKRLLD+++P +I+ NE RMLQEAVDAL DNGRRGR I G+N+ Sbjct: 471 DLNDLYRRVINRNNRLKRLLDVSSPTPQLIIHNEIRMLQEAVDALFDNGRRGRVIRGANR 530 Query: 322 RPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFI 381 RPLKSL+DM+KGKQGRFRQNLLGKRVDYSGRSVI +GP L+L+QCGLPKKMALELFKPFI Sbjct: 531 RPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVIGPELKLNQCGLPKKMALELFKPFI 590 Query: 382 YGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVL 441 + KLE RGL + IK AKK VE+E+ VVWDILDEVI+EHPVLLNRAPTLHRLGIQAF+PVL Sbjct: 591 FQKLEARGLVSNIKTAKKKVEKEDPVVWDILDEVIQEHPVLLNRAPTLHRLGIQAFDPVL 650 Query: 442 IEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIV 501 +EGKAI+LHPLVCAA+NADFDGDQMAVHVPL++EAQLEAR LMMS NNILSPANG+PI+V Sbjct: 651 VEGKAIRLHPLVCAAFNADFDGDQMAVHVPLSVEAQLEARVLMMSINNILSPANGKPIMV 710 Query: 502 PSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANG 561 P+QD+VLG YY++++ +KGEG + +E Y +G+ HAR++VR+T DA+G Sbjct: 711 PTQDMVLGCYYLSKERKGSKGEGFSFSSAEEVRIAYDAGVVEPHARIRVRMT----DASG 766 Query: 562 ELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFA 621 ++ +TTVGR + I+P G+ + VN+ L KK ++ +++ C+R G + TV F Sbjct: 767 QVKTH----ETTVGRVLFSGILPSGIRFEEVNKELTKKVLTNLIDQCFRKSGRQETVGFL 822 Query: 622 DQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNK 681 D+I GF +A RSG S+ I DM IP+ K E I +A EV EI+ Q+ GL+TAGERYNK Sbjct: 823 DRIKQIGFEFATRSGISIAIGDMRIPKNKSEAIEKANLEVLEIENQYNEGLITAGERYNK 882 Query: 682 VIDIWAAANDRVSKAMMDNLQTETVINRDG----QEEKQVSFNSIYMMADSGARGSAAQI 737 VID WA + V+ MM L+ E + ++G + E V FNSIYMMADSGARGSA QI Sbjct: 883 VIDKWAQVTELVADEMMKELKAEELAVQNGTAVSEGETPVRFNSIYMMADSGARGSAQQI 942 Query: 738 RQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLT 797 RQL GMRGLMAKP G IIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLT Sbjct: 943 RQLGGMRGLMAKPSGEIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLT 1002 Query: 798 RRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVL------KP 851 RRLVDVAQD+++TE+DCGT GI +T ++EGG+ EPL +R+LGRV AED+ + Sbjct: 1003 RRLVDVAQDVIITEEDCGTLNGIEVTALVEGGETIEPLEERILGRVAAEDIFVTVLKGQE 1062 Query: 852 GTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINK 911 +I+V ++E+ + ++E+ +D +K+RSV++C T GVCA CYGRDL+ G + Sbjct: 1063 RITEIVVGAGEEINEEKIERIKESGLDLIKIRSVLTCQTRRGVCAACYGRDLSSGKRVEL 1122 Query: 912 GEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSG 971 GEAIG+IAAQSIGEPGTQLTMRTFHIGG A + A +S + K G ++ N+ +V N G Sbjct: 1123 GEAIGIIAAQSIGEPGTQLTMRTFHIGGTA-QVAKQSIHEAKRDGKVRYDNLTTVRNKEG 1181 Query: 972 KLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEV 1031 + S+N +L ++ GR KE Y + YGA + DG++V+ G + WDP + P++TE Sbjct: 1182 ANIAMSKNGKLVIVGLDGREKERYSIVYGARVLLEDGKEVSIGSKLVEWDPFSTPILTEA 1241 Query: 1032 SGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIP 1091 SG V F D+ D T+ + DE +GL S V++D+A++ ++RP ++I +A Sbjct: 1242 SGQVVFRDIQDRVTMREEIDEASGLKSRVIIDNAKQ-----NMRPRIEIREA-------- 1288 Query: 1092 GTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPK 1151 G+ +Y LP A + +E+ +S+GD +A+IP+ES TKDITGGLPRVA+LFEAR+PK Sbjct: 1289 GSKNRKEYPLPIGAHILVEEKENVSTGDVIAKIPRESTKTKDITGGLPRVAELFEARKPK 1348 Query: 1152 EPAILAEISGIVSFGKETKGK-RRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVI 1210 E A++ EI GIV F +G+ R+++ + + E IPK + ++V E + VE G+ + Sbjct: 1349 EQAVITEIEGIVEFKDGRQGRSNRVILVKNEQGEEKEYTIPKGKHVSVHENDWVEAGEPL 1408 Query: 1211 SDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAG 1270 DG PHDIL + G + Y+VNEVQ+VYRLQGV INDKHIEVIVRQMLRK I + G Sbjct: 1409 MDGSVNPHDILNVLGPQDLMTYLVNEVQEVYRLQGVSINDKHIEVIVRQMLRKVRIDDPG 1468 Query: 1271 SSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTR 1330 +DFL G QV+ + N ++ GK+ A LLGITKA+L+TESFISAASFQETTR Sbjct: 1469 DTDFLVGSQVDRGIFEEVNDQIVQLGKLPAKGGSMLLGITKAALSTESFISAASFQETTR 1528 Query: 1331 VLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQVTAEDAS 1390 VLTEAA+ GK D L GLKENVIVGRLIPAGTG+ + R A GE + Q ++ Sbjct: 1529 VLTEAAINGKTDALVGLKENVIVGRLIPAGTGFP----KFRMTAVGEVESESQKELSESG 1584 Query: 1391 A 1391 + Sbjct: 1585 S 1585 Score = 219 bits (557), Expect = 7e-55, Method: Composition-based stats. Identities = 107/151 (70%), Positives = 128/151 (84%) Query: 8 LKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKD 67 L+ ++ F A+KI LAS + IRSWSFGEVKKPETINYR+FKPERDGLFCA+IFGPVKD Sbjct: 48 LRIDSEVMSFSALKIMLASSEKIRSWSFGEVKKPETINYRSFKPERDGLFCAKIFGPVKD 107 Query: 68 YECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLL 127 +EC CGKYKR+KHRGVIC+KCGVEV Q+KVRRERMGHIELA+P AHIWFLK LPSRIG L Sbjct: 108 WECNCGKYKRMKHRGVICDKCGVEVIQSKVRRERMGHIELAAPVAHIWFLKGLPSRIGNL 167 Query: 128 LDMPLRDIERVLYFESYVVIEGGMTNLERQQ 158 LDM ++D++++LYFESYV+ + G + Q Sbjct: 168 LDMTIKDLDQILYFESYVITDLGDILEQIDQ 198 >UniRef50_C0QQL7 DNA-directed RNA polymerase n=7 Tax=Bacteria RepID=C0QQL7_PERMH Length = 1586 Score = 1318 bits (3412), Expect = 0.0, Method: Composition-based stats. Identities = 645/1442 (44%), Positives = 895/1442 (62%), Gaps = 131/1442 (9%) Query: 18 DAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVK--DYECLCGKY 75 +K+ + S + R E Y + G+ ++ + D E K Sbjct: 170 KYVKLFVKSEEEFR----------EAYEYEHSEKYEYGMGAEKVKDILSRLDLEAYAHKL 219 Query: 76 -KRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRD 134 K +K V ++ G E T+ R + E+A A + F R G ++ ++ Sbjct: 220 RKEMKSYAVGYDELGPEFKNTQERLYKKVISEIARRLAEVGF------RFGEVVPTD-KE 272 Query: 135 IERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGD-EFDAKMGAEAIQALLKSMD 193 I+ + E +VVI+ T L + Q++ E+ EE G+ F+ G A++ L + Sbjct: 273 IDAIFTKEYFVVIDPKDTELLKGQLIHREEVERLREELGEEAFEVDSGPGALEKLYRDYR 332 Query: 194 --------LEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVL 245 + E +R+ + + +E K KKL +R++L+E F++SGN+PEWMIL V+PV+ Sbjct: 333 DKNPDIPVFDIIKESVRQTILKEVAEQKLKKLVRRLRLIEGFIKSGNRPEWMILDVIPVI 392 Query: 246 PPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDA 305 PPDLRPL+PLDGGRFATSDLNDLYRRVINRNNRLKRL++L AP+II+RNEKRMLQEAVD Sbjct: 393 PPDLRPLIPLDGGRFATSDLNDLYRRVINRNNRLKRLIELDAPEIIIRNEKRMLQEAVDT 452 Query: 306 LLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQ 365 L+DNGRRGR +T N RPLKSL+D ++GKQGRFRQNLLGKRVDYSGRSVI VGP L++H+ Sbjct: 453 LIDNGRRGRIVTQ-NNRPLKSLSDSLRGKQGRFRQNLLGKRVDYSGRSVIVVGPDLQMHE 511 Query: 366 CGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNR 425 CGLPK MALELFKPFIY +LE +G AT+IK AKKMVE + VW+ L+EV+++HPVLLNR Sbjct: 512 CGLPKIMALELFKPFIYRRLEEKGYATSIKNAKKMVEEKAPEVWECLEEVVKQHPVLLNR 571 Query: 426 APTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMM 485 APTLHR+ +QAFEP L+EGKAI+LHPLVC +NADFDGDQMAVHVPL++EAQ+E+ LM+ Sbjct: 572 APTLHRMSVQAFEPKLVEGKAIKLHPLVCPPFNADFDGDQMAVHVPLSVEAQIESYILML 631 Query: 486 STNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLH 545 ST NILSPA+G+PI +PSQD++LG +YMT+ AKGEG EA Y G L Sbjct: 632 STQNILSPAHGKPITMPSQDIILGAHYMTQAIEGAKGEGKYFADEDEAILAYELGKVDLL 691 Query: 546 ARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKML 605 A++KV+ +G++V +TTVGR I + P+G Y +N+ + KK ISK++ Sbjct: 692 AKIKVK-------KDGKVV------ETTVGRLIFNKVFPEG--YRFINETVDKKKISKII 736 Query: 606 NTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQ 665 + Y G + V D++ GF YAAR+G S+ IDD+V+P KK EI+ +AE E + Sbjct: 737 SEIYDQFGNEIAVDTLDRLKALGFEYAARAGISIAIDDLVVPSKKWEIVRKAEKEAERVW 796 Query: 666 EQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMM 725 +Q+ G++T GER+NKVIDIW+ + V+K M D ++ + + +E +FN IYMM Sbjct: 797 QQYVDGIITKGERHNKVIDIWSQTTNEVTKMMFDEIENSKRV--ENGKEYPGTFNPIYMM 854 Query: 726 ADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLAD 785 A SGARG+ QIRQLAGMRGLMAK G IETPI +NFREGL V++YFIST+GARKGLAD Sbjct: 855 ALSGARGNRDQIRQLAGMRGLMAKHSGEFIETPIRSNFREGLTVVEYFISTYGARKGLAD 914 Query: 786 TALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTA 845 TALKTA +GYLTRRLVDVAQD+V+T +DCGT G++++ VIEGG++ PL++R+LGR A Sbjct: 915 TALKTAVAGYLTRRLVDVAQDVVITNEDCGTLNGLVVSAVIEGGEIVVPLKERILGRYAA 974 Query: 846 EDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLAR 905 ED+ P T +++V + E+ +E ++ VK+RSV++C+ GVCA CYGRDL++ Sbjct: 975 EDIYDPYTEELIVSAGEEIDEEKAQEIENAGIEEVKIRSVLTCEQKRGVCAKCYGRDLSQ 1034 Query: 906 GHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKS 965 +++ GEA+G+IAAQSIGEPGTQLTMRTFHIGGAA+ A ++ + +G +KL NVK+ Sbjct: 1035 KKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHIGGAATAKAVQTKHEASVEGKVKLLNVKT 1094 Query: 966 VVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTM 1025 V + GK+++ +R+ +K++DE G+ KE + VPYG VL DG+ V G+T+ WDP ++ Sbjct: 1095 VTDKEGKVLVINRDGAIKIVDEEGKIKERFPVPYGGVLKVKDGQDVKPGDTLVEWDPFSI 1154 Query: 1026 PVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQG 1085 P+I E SG + D+I T+ + D +TG + + + S R P + I G Sbjct: 1155 PIIAEKSGTLELRDIILDVTLREERDNITGKTIMDI--SFMRPKDAVLHTPRMIIKGDDG 1212 Query: 1086 ---------NDVLIPGTDMPAQYFLPGKA------------IVQLEDGVQISSGDTLARI 1124 N +L+ D + A ++++ G +++ GD +A+I Sbjct: 1213 KEYAYDLPVNTILMLSRDQLETKWDKCPACSEAEKADVYHNYLEVKAGFKVNEGDIIAKI 1272 Query: 1125 PQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSD 1184 P+E+ +DI GGLPRV +L EAR PK AI++EI GIV ++ +V P+ G Sbjct: 1273 PKETAKVRDIVGGLPRVEELLEAREPKNRAIVSEIDGIVRIYEDADDI--IVYNPITGQS 1330 Query: 1185 PYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDI-----LRLRGV------------- 1226 +PK + V G+ V+ G ++D + L+ +GV Sbjct: 1331 ET-YDVPKDALVIVKNGQHVQEGQHLTDDGSVKAEFEGIVRLKSKGVKVIVFNKETGLQR 1389 Query: 1227 ----------------------------------------HAVTRYIVNEVQDVYRLQGV 1246 + +++V EVQ VYRLQGV Sbjct: 1390 EYSIAKGKFIIVKDGETVKAGDPLTDGTPNPHDILKIMGPEELAKFLVKEVQMVYRLQGV 1449 Query: 1247 KINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDL 1306 INDKH EVI+RQ+LRK IV+ G S FL E V+ ++ + + G L Sbjct: 1450 DINDKHFEVIIRQILRKVKIVDPGDSRFLLNEIVDRIDLEEEIQRIAEEGGKPPKAEPVL 1509 Query: 1307 LGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYH 1366 +GITKASL+T S+ISAASFQETTRVL +AAV GK D+L GLKENVI+G ++PAGTG + Sbjct: 1510 VGITKASLSTRSWISAASFQETTRVLADAAVEGKEDKLEGLKENVIIGNIVPAGTGIKQY 1569 Query: 1367 QD 1368 + Sbjct: 1570 AE 1571 Score = 226 bits (575), Expect = 7e-57, Method: Composition-based stats. Identities = 113/213 (53%), Positives = 152/213 (71%), Gaps = 22/213 (10%) Query: 17 FDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYK 76 F++I++ LASP+ IR WS GEVKKPET+NYRT KPE+DGLFCA+IFGPVKDYECLCGKYK Sbjct: 13 FESIRLTLASPERIREWSHGEVKKPETLNYRTLKPEKDGLFCAKIFGPVKDYECLCGKYK 72 Query: 77 RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIE 136 + K+ G IC++CGVEVT++ VRRER GHIELASP AHIW+LKS PS+IG LL + RDIE Sbjct: 73 KKKYEGTICDRCGVEVTRSDVRRERFGHIELASPVAHIWYLKSTPSKIGNLLGLTSRDIE 132 Query: 137 RVLYFESYVVIE---------------------GGMTNLERQQILTEEQYLDALE-EFGD 174 RV+YFESY+++E G +T + + +EE++ +A E E + Sbjct: 133 RVIYFESYLIVEHPDEEEEEAFENDPNTIPLMDGALTKYVKLFVKSEEEFREAYEYEHSE 192 Query: 175 EFDAKMGAEAIQALLKSMDLEQECEQLREELNE 207 +++ MGAE ++ +L +DLE +LR+E+ Sbjct: 193 KYEYGMGAEKVKDILSRLDLEAYAHKLRKEMKS 225 >UniRef50_B2V7L9 DNA-directed RNA polymerase subunit beta' n=11 Tax=Bacteria RepID=RPOC_SULSY Length = 1579 Score = 1313 bits (3398), Expect = 0.0, Method: Composition-based stats. Identities = 637/1433 (44%), Positives = 893/1433 (62%), Gaps = 121/1433 (8%) Query: 18 DAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKR 77 +K+ + S D R + E E Y + + ARI + K Sbjct: 169 KYVKLHVVSEDEFREREY-EYSNAEKYEYGMGAEKVKDVL-ARIDLEILAKRL---KKDL 223 Query: 78 LKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIER 137 + G + + R IE+A + + R G + + ++I+ Sbjct: 224 HGYAGTF-DDLNLSYKMNYPRLYNKAIIEIARKFSEVGL------RFGDI-EPTEKEIDV 275 Query: 138 VLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMD---- 193 ++ Y+VI+ ++L+ QI+ E ++ + A G EA++ L K+ Sbjct: 276 IISQGYYIVIDPASSDLKFGQIINPEN----VDSLPEGVIALTGVEALEKLYKAYREKVK 331 Query: 194 ----LEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDL 249 E E +R + + ++ + KK+ +R++L+E F++S NKPEWMIL VLPV+PPDL Sbjct: 332 EIPIFEVIKESVRNVILKEGTDARLKKIIRRLRLVEGFIESENKPEWMILEVLPVIPPDL 391 Query: 250 RPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDN 309 RPL+ LDGGRFA+SDLNDLYRRVINRNNRLKRL+DL AP+II+RNEKRMLQEAVDAL+DN Sbjct: 392 RPLIALDGGRFASSDLNDLYRRVINRNNRLKRLIDLDAPEIIIRNEKRMLQEAVDALIDN 451 Query: 310 GRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLP 369 GRRGR +T N RPLKSL+D ++GK+GRFRQNLLGKRVDYSGRSVI VGP L++H+CGLP Sbjct: 452 GRRGRMVTQ-NNRPLKSLSDSLRGKEGRFRQNLLGKRVDYSGRSVIVVGPELQMHECGLP 510 Query: 370 KKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTL 429 K+MALELFKPFIY +LE +G AT+IK+AKK+VE + V++ L+EV+++HPVLLNRAPTL Sbjct: 511 KQMALELFKPFIYRRLEEKGYATSIKSAKKLVEEKVPEVYECLEEVVKQHPVLLNRAPTL 570 Query: 430 HRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNN 489 HR+ +QAFEP L+EGKAI+LHPLVC +NADFDGDQMAVHVPL++EAQLE+ LM+ST N Sbjct: 571 HRMSVQAFEPKLVEGKAIKLHPLVCPPFNADFDGDQMAVHVPLSVEAQLESYILMLSTQN 630 Query: 490 ILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVK 549 ILSPA+G+P+ +PSQD++LG++YMT++ NAKGEG + P+EA Y G L A++K Sbjct: 631 ILSPAHGKPVTMPSQDIILGVHYMTQELPNAKGEGKIFGSPEEAVTAYELGTIDLLAKIK 690 Query: 550 VRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCY 609 VRI NG++V +TT GR I I+P+G VN+ L KK ISK+++ Y Sbjct: 691 VRI-------NGKIV------ETTAGRIIFNQILPEGYK--FVNEVLDKKKISKLISDIY 735 Query: 610 RILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQ 669 G + D+I GF +A ++ S+ + D+V+P+KK +I+ +A E + +Q+ Sbjct: 736 EKYGNEIAAQTLDKIKEIGFRFATKAAVSISVADLVVPKKKAKILEKAIKEAETVWKQYV 795 Query: 670 SGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSG 729 G++T GER+NK+IDIW+ A + V+K M + ++ + + ++ FN +YMMA SG Sbjct: 796 DGIITKGERHNKIIDIWSQATNEVAKEMFNEIEKSERV--ENGKKYPGYFNPVYMMASSG 853 Query: 730 ARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALK 789 ARGS QIRQLAGMRGLMAK G IETPI +NFREGL+V++YFIST+GARKGLADTALK Sbjct: 854 ARGSRDQIRQLAGMRGLMAKHSGEFIETPIMSNFREGLSVVEYFISTYGARKGLADTALK 913 Query: 790 TANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVL 849 TA +GYLTRRL DVAQD+++T +DCGT +GI ++ +IE G++ P +DR++GR TAEDV Sbjct: 914 TAVAGYLTRRLADVAQDVIITGEDCGTLKGITVSSIIESGEIVVPFKDRIIGRYTAEDVY 973 Query: 850 KPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHII 909 P T ++L+ N + E+ D E+ ++ VK+RSV++C+ GVCA CYGRDLA+ ++ Sbjct: 974 DPYTGELLISANEEITEEVVDKFEKAGIEKVKIRSVLTCEMPHGVCAKCYGRDLAQRKLV 1033 Query: 910 NKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNS 969 + GEA+G+IAAQSIGEPGTQLTMRTFHIGGAA+ ++ + + G++KL NVK VV+ Sbjct: 1034 DIGEAVGIIAAQSIGEPGTQLTMRTFHIGGAATAKEVQTQHKATHDGTVKLQNVKFVVDK 1093 Query: 970 SGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVIT 1029 G+ +I +R +K++D+ G+T E + PYGAVL DG++V G +A W+P + P+I Sbjct: 1094 KGRKLIINREGSIKILDKEGKTIERFPAPYGAVLYVEDGQEVKEGTILAEWEPFSDPIIA 1153 Query: 1030 EVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGND-- 1087 E G V D+I T+ + D +TG + + + R + P L I GN+ Sbjct: 1154 EKGGEVELRDVILDVTLKEERDNITGKTIYTI--TFLRPKDAQLHTPRLVIKGEDGNEYV 1211 Query: 1088 --------VLIPGTDM-----------PAQYFLPGKAIVQLEDGVQISSGDTLARIPQES 1128 +LIP ++ A+ +Q++ G ++S GD +A+IP+E Sbjct: 1212 YDLPVNTILLIPKENLEEVWDKCFACSEAEKTDIHHKYLQVKKGFKVSEGDVVAKIPKEK 1271 Query: 1129 GGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRL------------- 1175 +DI GGLPRV +L EAR PK AI+ EI GIV ++ K + Sbjct: 1272 AKVRDIVGGLPRVEELLEAREPKNKAIITEIDGIVKIYEDAKEITLINPKEGKTETYKVP 1331 Query: 1176 ------------------------VITPVDG------------------SDPYEEMIPKW 1193 ++ DG + +PK Sbjct: 1332 DTTFVIVKNGSFVKAGQSLVDDGSIVAEFDGMVRLKSEGSRIVVFNKETGQQKDYKVPKG 1391 Query: 1194 RQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHI 1253 + + V + V+ GD ++DG PHDILR+ G+ + ++V E Q VYRLQGV+INDKH Sbjct: 1392 KFIIVKDNSVVKAGDPLTDGTPNPHDILRVMGIEELAAFLVKEAQIVYRLQGVEINDKHF 1451 Query: 1254 EVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKAS 1313 EVI+RQ+LRK IV+ G S FL E V+ ++ ++ + G L+GITKA+ Sbjct: 1452 EVIIRQILRKVKIVDPGDSRFLLNEIVDKLDLEEEINKVISEGGRPPKAEPVLVGITKAA 1511 Query: 1314 LATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYH 1366 L T S+ISAASFQETTRVL +AAV GK D L+GLKENVI+G +IPAGTG + Sbjct: 1512 LTTRSWISAASFQETTRVLADAAVEGKVDPLKGLKENVIIGGIIPAGTGIKEY 1564 Score = 239 bits (611), Expect = 5e-61, Method: Composition-based stats. Identities = 117/238 (49%), Positives = 165/238 (69%), Gaps = 23/238 (9%) Query: 9 KAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDY 68 K + +T FDAI+++LASP++IRSWS GEVKKPET+NYRT KPE+DGLF ARIFGP+KDY Sbjct: 4 KERKETVRFDAIRLSLASPEIIRSWSHGEVKKPETLNYRTLKPEKDGLFDARIFGPIKDY 63 Query: 69 ECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLL 128 ECLCGKYK+ K+ G IC++CGVEVT++ VRRER GHIELASP HIW+LKS PS+IG LL Sbjct: 64 ECLCGKYKKRKYEGTICDRCGVEVTRSDVRRERFGHIELASPVVHIWYLKSTPSKIGSLL 123 Query: 129 DMPLRDIERVLYFESYVVI---------------------EGGMTNLERQQILTEEQYLD 167 D+ RDIERV+YFESY+VI EGG+T + +++E+++ + Sbjct: 124 DLTSRDIERVVYFESYLVIEHPTEEEEEAFEKDPKSLPLMEGGLTKYVKLHVVSEDEFRE 183 Query: 168 ALEEFG--DEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKL 223 E+ ++++ MGAE ++ +L +DLE ++L+++L+ L+ ++ Sbjct: 184 REYEYSNAEKYEYGMGAEKVKDVLARIDLEILAKRLKKDLHGYAGTFDDLNLSYKMNY 241 >UniRef50_B0VGC0 DNA-directed RNA polymerase n=2 Tax=Bacteria RepID=B0VGC0_9BACT Length = 1509 Score = 1290 bits (3338), Expect = 0.0, Method: Composition-based stats. Identities = 629/1515 (41%), Positives = 900/1515 (59%), Gaps = 149/1515 (9%) Query: 2 KDLLKFLKAQTKTEEFDAIKIALASPDMIRS-WSFGEVKKPETINYRTFKPERDGLFCAR 60 + +LK K + K E+DA++I +ASP+ IR+ WS GEV KP+T+NYRT KPE+DGLFC R Sbjct: 15 EKMLKESKHEIKPNEYDAVRIKIASPETIRNDWSHGEVTKPDTLNYRTLKPEKDGLFCER 74 Query: 61 IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120 IFGP +DYEC CGKYK+ + +G +C++CGV VT ++VRR RMGHI+LA P AHIWF+KS Sbjct: 75 IFGPERDYECACGKYKKKRFQGTVCDRCGVLVTTSRVRRTRMGHIDLAVPIAHIWFVKSA 134 Query: 121 PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKM 180 PS+IG LLDM ++D+ERVLY+ES++VI+ G + E+ ++L ++Y + ++ D F A M Sbjct: 135 PSKIGTLLDMTVKDLERVLYYESFIVIDPGDSPFEKMELLEVDEYYEIKDKVADNFLALM 194 Query: 181 GAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT 240 G EAI+ LLK ++L+ E LR L S +++KL ++K+++AF++SGN+PE MIL Sbjct: 195 GGEAIRELLKRINLKNEALDLRTRLKFEESALRKQKLINKLKIVDAFIKSGNRPEDMILE 254 Query: 241 VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ 300 LPVLPP LRPLVPL+GGRFAT+D NDLYRRVI RNNRLK LL++ AP++I+RNEKRMLQ Sbjct: 255 ALPVLPPTLRPLVPLEGGRFATADFNDLYRRVITRNNRLKALLEIRAPEVILRNEKRMLQ 314 Query: 301 EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360 EAVDAL+DNGR+ R + G RPLKSL D +KGKQGRFRQNLLGKRVDYSGRSVITVGP Sbjct: 315 EAVDALIDNGRKARPVRGRGNRPLKSLTDQLKGKQGRFRQNLLGKRVDYSGRSVITVGPE 374 Query: 361 LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP 420 L+L+QCGLPK+MA+ELFKP++ KL+ G +K AKK++E+++ +W IL+EVI+++P Sbjct: 375 LKLYQCGLPKEMAVELFKPYLIEKLQKIGEVDKVKNAKKLIEKKQPEIWSILEEVIKDYP 434 Query: 421 VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480 VLLNRAPTLHRLGIQAF PVL + KAIQLHP+VC +NADFDGDQM V++PL++E+Q+EA Sbjct: 435 VLLNRAPTLHRLGIQAFMPVLTDNKAIQLHPMVCVPFNADFDGDQMGVYIPLSIESQIEA 494 Query: 481 RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVN---AKGEGMVLTGPKEAERLY 537 R LM+ST N+L PANG + +QD+VLG YY+T + + GP E Y Sbjct: 495 RVLMLSTRNLLLPANGRLAMAANQDIVLGCYYLTMEETPPPVEIEKLRHFYGPDEVIAAY 554 Query: 538 RSGLASLHAR-VKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQAL 596 + ++ V + L ++ TTVGR I I+P + + N Sbjct: 555 EAEEQFCSSKGETVYERNLDLHTWIRLKLESEYIVTTVGRVIFNQIMPPEVGFQ--NIVF 612 Query: 597 GKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISE 656 K ++ + C+ +G T DQI GF YA R+G + DD+V+P++K EII++ Sbjct: 613 DKGKLNDLAMLCFDAVGQWRTAQILDQIKELGFHYATRAGVTFSFDDIVVPKRKDEIIAQ 672 Query: 657 AEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQ 716 A+ EV +I + Q G +T ER+ +V+D W RV+ MM+ L + Sbjct: 673 ADQEVKKITDLHQKGGITENERFGRVVDQWKKTTVRVTDEMMEELSKT-----------R 721 Query: 717 VSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDG-------SIIETPITANFREGLNV 769 NSIYMM SGARGS QI+QL GMRGLM KP +IETPI +NF+EGL V Sbjct: 722 NGLNSIYMMYKSGARGSKDQIKQLGGMRGLMDKPTKIGSTGGADVIETPIKSNFKEGLTV 781 Query: 770 LQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGG 829 L+YF+STHGARKGLADTALKTA++GYLTRRLVDVAQ+ ++T +DCGT G+ MT + EG Sbjct: 782 LEYFVSTHGARKGLADTALKTADAGYLTRRLVDVAQNAIITIEDCGTTRGVNMTALKEGN 841 Query: 830 DVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCD 889 ++ + L +R+ GR +D++ P T ILV + + ++ + + +V VRS+++C+ Sbjct: 842 EIVQTLAERIQGRTAVDDIVSPITGRILVSAGEEISNKMARTIQNHGLISVHVRSILTCE 901 Query: 890 TDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESS 949 + G+CA CYGR+LA G+ +G+IAAQSIGEPGTQLT+RTFHIGGAAS A + Sbjct: 902 AEKGICAKCYGRNLATQKPATIGDPVGIIAAQSIGEPGTQLTLRTFHIGGAASTATELAE 961 Query: 950 IQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTK--ESYKVPYGAVLAKGD 1007 + + G +K + +V+N+ +L+ S ++ ++DE K E +KV Y A + D Sbjct: 962 VVASHDGIVKFDRMNTVINTENQLISVSYLGKILIVDENDENKVLEEFKVEYAATVHVQD 1021 Query: 1008 GEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAER 1067 G++VA + +WD P+I+ G + + + I T + +++T L +++S +R Sbjct: 1022 GQKVAKDTKLLSWDQFNNPLISTAKGVLHYENFIKDITYKEEYNDITMARELTIIESKDR 1081 Query: 1068 TAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQE 1127 +P +IV G LIP LP IV++EDG + GD L + + Sbjct: 1082 RK-----QPQFRIVGEDGTVRLIP---------LPTGLIVRVEDGSFVHIGDILGQTSRM 1127 Query: 1128 SGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDG----- 1182 + +DITGGLPRV DLFEAR PK+ A +++I GIV+ G K R + +TP +G Sbjct: 1128 TIKQRDITGGLPRVQDLFEARVPKDKAKISDIDGIVTIGGLKKTGRDIFVTPPNGLFAPC 1187 Query: 1183 -----------------------------------SDPYEEMIPKWRQ------------ 1195 + +++I ++ Sbjct: 1188 DGKVVVLYDEDKNQYIAVLPDKAVYSENDGKVSIIEENRKKIIQVAKRNQNPVQYPVPKG 1247 Query: 1196 --LNVFEGERVERGDVIS----------DGPEAPHDILRLRGVHAVTRYIVNEVQDVYRL 1243 + V EGE V++G + + D + + A +YI+ + + Sbjct: 1248 LQILVKEGESVKKGTPLCGKLYAVPPEQESIVEIGDNVTMHQPLAGRKYIIPSGKRIIVH 1307 Query: 1244 QGVKIN----------DKHIEVIVRQMLRKATIVNAGSSDF-LEGEQVEYSRVKIANREL 1292 QG + D H ++ + + I+N + +G +++ V + R++ Sbjct: 1308 QGDYVESGDALSDGPLDPHDMLVKGVIEAQILILNEIQEIYRKQGVKIDDKHVSVIIRQM 1367 Query: 1293 EANGKVGATYSRDLL--------------------GITKA-------SLATESFI----- 1320 ++ + S L G T A + S + Sbjct: 1368 FKKVRITDSGSTSFLQGDIVDKVLVEKENREAIEFGKTPAQFEQLLLGITKTSLLTESWL 1427 Query: 1321 SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPA 1380 SAASFQETT+VLT+AA+ G+ D L GLKE++I+G IP GTG + + M ++A E Sbjct: 1428 SAASFQETTKVLTKAAIEGRVDHLEGLKESIIIGHRIPVGTGTKLYNN-MLKKAVNEGKT 1486 Query: 1381 APQVTAEDASASLAE 1395 Q+ E A S E Sbjct: 1487 VAQIIDEFAHRSKEE 1501 >UniRef50_B1GZ76 DNA-directed RNA polymerase subunit beta' n=2 Tax=Bacteria RepID=RPOC_UNCTG Length = 1593 Score = 1290 bits (3337), Expect = 0.0, Method: Composition-based stats. Identities = 608/1271 (47%), Positives = 838/1271 (65%), Gaps = 56/1271 (4%) Query: 131 PLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLK 190 R+ ++ + + + +L E + FGD +GAEA+++LL+ Sbjct: 320 KYEGCLRIEILKNKIPFIENFSRSDSFVLLEESDINNIQNGFGDSLKVNIGAEAVRSLLE 379 Query: 191 SMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLR 250 ++L+ E + + E+ +T S+ +R +L ++++++E F+ S +PEWMILTVLPV+PPDLR Sbjct: 380 EINLDDEMKNIYAEIKKTKSDAERARLLRKLRVVEGFLNSQTRPEWMILTVLPVIPPDLR 439 Query: 251 PLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNG 310 PLV LDGGRFATSDLNDLYRR+INRNNRL+ + L AP +++ NEKR+LQEAVDAL+DN Sbjct: 440 PLVALDGGRFATSDLNDLYRRIINRNNRLRHIEQLKAPIVMINNEKRLLQEAVDALIDND 499 Query: 311 RRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPK 370 R R +TG+ R LKSL+D +KGK+GRFRQNLLGKRVDYSGRSVI VGP LRL+QCG+PK Sbjct: 500 SRMRPVTGAGNRILKSLSDTLKGKRGRFRQNLLGKRVDYSGRSVIVVGPNLRLNQCGIPK 559 Query: 371 KMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLH 430 +MALELFKPFI +L ++ T+++AK+M+ER + VW+IL++V + HPVLLNRAPTLH Sbjct: 560 EMALELFKPFIVKEL-IKQENITLRSAKRMLERGDLKVWNILEKVTQSHPVLLNRAPTLH 618 Query: 431 RLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNI 490 RLGIQAFEPVL+EGK+IQLHPL C+A+NADFDGDQMAVH+P++LEAQLEAR LMM+T NI Sbjct: 619 RLGIQAFEPVLVEGKSIQLHPLTCSAFNADFDGDQMAVHLPISLEAQLEARVLMMATRNI 678 Query: 491 LSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKV 550 LSPA+G PI VPSQD+VLG Y+T++ GEG V + EA Y++ L AR+KV Sbjct: 679 LSPASGRPIAVPSQDMVLGNCYLTKEKYGVVGEGKVFSSVSEAISAYQAEKVDLQARIKV 738 Query: 551 R----ITEYEKDANGELVAKTSLKD------------TTVGRAILWMIVPKG----LPYS 590 I + + + E T K+ TTVGR I +PK Sbjct: 739 AGITSIRDKNLNNDDEQPDVTKWKNCKSEDDTEIINYTTVGRIIFNEQLPKNDDGSYALE 798 Query: 591 IVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKK 650 N+++ KK + +++ CY+ LG T + D+I G+ YA +G S+ ID+M +P +K Sbjct: 799 YQNKSMTKKELVALVDRCYKELGQFKTTVLLDEIKRIGYKYATLAGISISIDEMKVPTEK 858 Query: 651 HEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRD 710 +++ EA+ +++EI++Q + GL+T ERYN++IDIW D +S M D ++ E Sbjct: 859 EKMVREAKTKISEIEKQAKLGLITESERYNRIIDIWTRVTDEISDIMFDEMRKEET---K 915 Query: 711 GQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPD-------GSIIETPITANF 763 + Q FNSI+MMADSG+RGS Q+RQLAGMRGLMAKP G IIETPI +NF Sbjct: 916 AYKPGQNRFNSIFMMADSGSRGSRQQVRQLAGMRGLMAKPQKKLTGGIGEIIETPIISNF 975 Query: 764 REGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMT 823 REGL VL+YFISTHG RKGLADTALKTA +GYLTRRLVDVA D+VV E+DCGT G+ + Sbjct: 976 REGLTVLEYFISTHGGRKGLADTALKTAEAGYLTRRLVDVAHDVVVREEDCGTVNGVFIG 1035 Query: 824 PVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVR 883 + G ++ E + +RV+GR ++V+ D+++ R L+ + + L E +D + +R Sbjct: 1036 TLRCGDEIIEKIDERVVGRTALDNVVDIVHDDLIIKRGELITPKKAEKLVEAGIDKIGIR 1095 Query: 884 SVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASR 943 SV++C++ GVCA CYG + A G + GEA+G++AAQSIGEPGTQLT+RTFHIGGAASR Sbjct: 1096 SVLTCESGHGVCAKCYGVNPATGEQVEMGEAVGILAAQSIGEPGTQLTLRTFHIGGAASR 1155 Query: 944 AAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVL 1003 S + +N G++ N+K++ N G+ ++ SRN EL + K+ Y++PYGAV+ Sbjct: 1156 VVQRSEVYAENNGTVNYYNLKTIQNKDGETIVLSRNAELVYTEYPVYRKQIYQIPYGAVI 1215 Query: 1004 AKGDGEQV----------AGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDEL 1053 DG+ V +A WDPH+ P+I+E G V F D+ DG T+ R+ ++ Sbjct: 1216 KIYDGQTVEIRVNPITGMKKDILIAKWDPHSKPIISEFDGTVNFVDVKDGVTLQREKSKI 1275 Query: 1054 TGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGV 1113 TG V+++ + P + + G+ V +Y LP + + D Sbjct: 1276 TGQIERVIIEHSSDRRS-----PRIVVKKDDGSVV---------EYPLPVDTTLVVRDKD 1321 Query: 1114 QISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVS-FGKETKGK 1172 ++ SGD LA+IPQE TKDITGGLPRVA+LFE RRP+ A+++EI GIV G KG Sbjct: 1322 RVKSGDILAKIPQEISRTKDITGGLPRVAELFEGRRPRNVAVVSEIDGIVHLVGPTVKGN 1381 Query: 1173 RRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRY 1232 ++ + + ++ R L V+EG+RV+ G+ +SDG PHDIL+++G V Y Sbjct: 1382 VKVEVENPETKMKKSYLVRAGRHLVVYEGDRVKEGEALSDGAINPHDILKVKGPKEVQEY 1441 Query: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANREL 1292 +VNE+Q VYRLQGV INDKHIE+IVRQML I ++G S +L GE V + +I + + Sbjct: 1442 LVNEIQQVYRLQGVSINDKHIEIIVRQMLSNVRITDSGDSHYLNGEIVSRYKYEIDRKAI 1501 Query: 1293 EANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVI 1352 + LLGITKASL+++SFISAASFQETTR+LTEAAV+G+ D L+GLKENV Sbjct: 1502 KGKKGKAPIAHSILLGITKASLSSDSFISAASFQETTRILTEAAVSGQVDYLKGLKENVS 1561 Query: 1353 VGRLIPAGTGY 1363 +GRLIPAGTG Sbjct: 1562 IGRLIPAGTGL 1572 Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 102/235 (43%), Positives = 152/235 (64%), Gaps = 17/235 (7%) Query: 17 FDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYK 76 FDA+++++ASPD I++WS+GEVKKPETINYRTFKPERDGLFC RIFGP KD+EC CGKYK Sbjct: 21 FDAVRVSVASPDQIKTWSYGEVKKPETINYRTFKPERDGLFCNRIFGPTKDWECHCGKYK 80 Query: 77 RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIE 136 +K++G IC++CGVEVT++KVRRER GHI LA P AH+WFLK PSR+G+LL+M + D+E Sbjct: 81 YIKYKGTICDRCGVEVTESKVRRERFGHINLAVPVAHLWFLKKPPSRVGILLNMKISDLE 140 Query: 137 RVLYFESYVVI-----EGGMTNLERQQILTEEQYLDALE------EFGDEFDAKMGAEAI 185 +V+Y+ Y+V+ G++ R+ +L + + + +EF Sbjct: 141 KVIYYAKYIVMGDLKDRSGISFFARKGMLMGGEDFNLFKYGINNPIVKEEFKNIFDGIVC 200 Query: 186 QALLKSMDLEQECEQLR------EELNETNSETKRKKLTKRIKLLEAFVQSGNKP 234 + + +L + +QL+ + ++E KK+ + +K + + + KP Sbjct: 201 EEIKLDSNLTKALKQLKVLVKGQADSAGISTEEAAKKILENVKKGDIYYKVYFKP 255 >UniRef50_D1BP71 DNA-directed RNA polymerase n=10 Tax=Veillonellaceae RepID=D1BP71_VEIPT Length = 1400 Score = 1289 bits (3336), Expect = 0.0, Method: Composition-based stats. Identities = 651/1459 (44%), Positives = 873/1459 (59%), Gaps = 144/1459 (9%) Query: 13 KTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLC 72 EFD+++I LASP+ I SWS GEVKKPETINYRT KPERDGLFC RIFGP KD+EC C Sbjct: 3 DVNEFDSMRIGLASPEQILSWSHGEVKKPETINYRTLKPERDGLFCERIFGPTKDWECHC 62 Query: 73 GKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPL 132 GKYKR++H+GV+C+KCGVEVT+ KVRRERMGHI+LA+P +HIW+ K +PSR+GL+LD+ Sbjct: 63 GKYKRIRHKGVVCDKCGVEVTRAKVRRERMGHIQLATPVSHIWYFKGIPSRMGLILDISP 122 Query: 133 RDIERVLY------------------------FESY---------------VVIEGGMTN 153 R +ERVLY F Y VVIE Sbjct: 123 RSLERVLYFASYIVVDPAGTPLTKRQLLSEQEFREYEAQFNEDGYTIGGKSVVIETVAQR 182 Query: 154 LERQQILTEEQYLDA----------LEEFGDEFD--------------------AKMGAE 183 ER I+ E Q + + E E++ MGAE Sbjct: 183 NERLAIVREAQRKERYNAALRDDATIPEADKEYEELTREERYELGAAEEVLFACIDMGAE 242 Query: 184 AIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLP 243 A++ALL +DLE +LREELN T S ++ + +R++++EAF QSGN+PEWMI+ ++P Sbjct: 243 AVKALLSELDLEALNAELREELN-TASGQRKIRAVRRLEVVEAFRQSGNRPEWMIMDIVP 301 Query: 244 VLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAV 303 V+PP+LRP+V LDGGRFATSDLNDLYRRVINRNNRLKRLLDL APDIIVRNEKRMLQEAV Sbjct: 302 VIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEAV 361 Query: 304 DALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRL 363 DAL+DNGRRGR +TG RPLKSL+DM+KGKQGRFRQNLLGKRVDYSGRSVI VGP L++ Sbjct: 362 DALIDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKM 421 Query: 364 HQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLL 423 HQCGLPK+MALELFKPF+ +L RG A+ IKAAK+ VER VW+ L+EVI+EHPVLL Sbjct: 422 HQCGLPKEMALELFKPFVMKRLVERGQASNIKAAKRQVERIGPGVWESLEEVIKEHPVLL 481 Query: 424 NRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARAL 483 NRAPTLHRLGIQAFEP+L EG+AI+LHPLVC A+NADFDGDQMA H+PL++EAQ EAR L Sbjct: 482 NRAPTLHRLGIQAFEPILWEGRAIKLHPLVCTAFNADFDGDQMACHLPLSVEAQAEARTL 541 Query: 484 MMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLAS 543 M+S++NILS +G+P+ VPSQD++LG YY+T N + + E Y S + Sbjct: 542 MLSSHNILSTKDGKPVAVPSQDMILGTYYLTVVRENTRDKAKTFATYDEVMLAYESHIIG 601 Query: 544 LHARVKVRITEYEKDAN--GELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAI 601 L + +R+ ++ + G L+ +L LW + + + + KK + Sbjct: 602 LQDILYIRLPDHGRVETTAGRLIFNNALF------PELWQYEKREDGTYSLGKVMDKKTV 655 Query: 602 SKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEV 661 K+++ C+++ G + T D+I G+++A R+G +V I D+ +PE K ++ AE EV Sbjct: 656 GKLVDQCFQLFGNEKTAELLDRIKSLGYSFARRAGMTVAIADIKVPEVKTSLLDTAEQEV 715 Query: 662 AEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNS 721 ++ ++ GL+T ERY K I +W A + V+ AMMDN+ + FN Sbjct: 716 EKVSRMYRRGLITEEERYRKTIQLWTKATEDVTDAMMDNM-----------ACDKDGFNP 764 Query: 722 IYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARK 781 +YMMA SGARG+ QIRQLAGMRGLMA P G II+ PI ANF+EGL VL YF S+HGARK Sbjct: 765 VYMMAISGARGNKQQIRQLAGMRGLMADPSGRIIDLPIKANFKEGLTVLDYFTSSHGARK 824 Query: 782 GLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTP-----VIEGGDVKEPLR 836 GLADTAL+TA+SGYLTRRLVDV+QD++V EDDC GI + E L+ Sbjct: 825 GLADTALRTADSGYLTRRLVDVSQDVIVREDDCDVV-GIDLVRERARLATSPRQALELLK 883 Query: 837 DRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCA 896 D+++GRV +DV+ T +++VP T+L EQ + E V ++ +R Sbjct: 884 DKLIGRVLDKDVVNAETGELVVPAETILDEQCLADIAEAGVTSIALR------------- 930 Query: 897 HCYGRDL-ARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNK 955 G L + I + +I +S + + T++ + ++ ++ V ++ Sbjct: 931 ---GAHLGSDSDINHTNLVQKIILGES--DDSIRATLKETMVQNMLNKDTVQA--IVDSE 983 Query: 956 GSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGE 1015 G + + ++ S E+++ R E + + A++ G Sbjct: 984 GVEIFPADTRLTEEGIEAILNSDVKEVQV-----RNNEIHGIEVEAIV---------EGT 1029 Query: 1016 TVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLR 1075 V P+ + G + ++++ +T L G + + D + +R Sbjct: 1030 GVIE------PLKDRIVGRIAAEELVNKET-GEVIVPLNGEITEALADEVVKHYETVKIR 1082 Query: 1076 PALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDTLARIPQESGGTK-- 1132 L G G D+ + V + I G L +GG Sbjct: 1083 SVLTCRSPYGVCRKCYGRDLGTGNQVQVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGD 1142 Query: 1133 DITGGLPRVADLFEARRPKEPAILAEISGIVSF--GKETKGKRRLVITPVDGSDPYEEMI 1190 DIT GLPRV +LFEAR+PK AI+AE G V + KG + IT DG + + +I Sbjct: 1143 DITQGLPRVEELFEARKPKRNAIIAENEGTVRVVPNEGKKGTNTIFITGEDGIE-LDYLI 1201 Query: 1191 PKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKIND 1250 P ++ V +G+ V G +++G PHDI+R+ G A RY+V EVQ VY+ QGV+IND Sbjct: 1202 PYGSRIIVKDGDVVSLGARLTEGSINPHDIMRVMGTEATQRYLVYEVQKVYKSQGVEIND 1261 Query: 1251 KHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGIT 1310 KHIEVIVRQML K I AG +D L G+ V+ + NR L NG+ AT R LLGIT Sbjct: 1262 KHIEVIVRQMLHKVKIETAGDADMLPGDMVDVNTFDEENRRLTLNGRENATGKRTLLGIT 1321 Query: 1311 KASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRM 1370 KA+LAT+SF+SAASFQETTRVLT+AA+ GK D L GLKENVI+G+LIPAGTG + ++ Sbjct: 1322 KAALATDSFLSAASFQETTRVLTDAAIKGKIDPLLGLKENVIIGKLIPAGTGMSRYRKIE 1381 Query: 1371 RRRAAGE-APAAPQVTAED 1388 + E +V +ED Sbjct: 1382 VVKNTPEIIDITEEVMSED 1400 >UniRef50_A5D5I3 DNA-directed RNA polymerase subunit beta' n=11 Tax=Clostridia RepID=RPOC_PELTS Length = 1170 Score = 1253 bits (3242), Expect = 0.0, Method: Composition-based stats. Identities = 585/1066 (54%), Positives = 752/1066 (70%), Gaps = 36/1066 (3%) Query: 13 KTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLC 72 FD I+I LASPD IR+WS GEVKKPETINYRT KPERDGLFC RIFGP +D+EC C Sbjct: 3 DLNNFDRIRIGLASPDQIRAWSSGEVKKPETINYRTLKPERDGLFCERIFGPTRDWECHC 62 Query: 73 GKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPL 132 GKYKR++++GV+C++CGVEVT++KVRRER+GHIELA+P +HIW+ K +PSR+GLLLDM Sbjct: 63 GKYKRVRYKGVVCDRCGVEVTRSKVRRERLGHIELAAPVSHIWYFKGIPSRMGLLLDMSP 122 Query: 133 RDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSM 192 R +E+VLYF SY+V + G T L ++Q+LTE +Y D E +G+ F A MGAEAI+ LL+ + Sbjct: 123 RALEKVLYFVSYIVTDPGDTGLIKKQLLTETEYRDCRERYGNAFKASMGAEAIKKLLEEI 182 Query: 193 DLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPL 252 +LE+ +LR+EL E + K + + +R++++EAF +SGN+PEWMIL V+PV+ P+LRP+ Sbjct: 183 NLEELARELRQELKEVTGQRKIRAI-RRLEVVEAFRKSGNRPEWMILEVIPVISPELRPM 241 Query: 253 VPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRR 312 V LDGGRFATSDLNDLYRRVINRNNRLKRLLDL APDIIVRNEKRMLQEAVDAL+DNGRR Sbjct: 242 VQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEAVDALIDNGRR 301 Query: 313 GRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKM 372 GR +TG RPLKSL+DM+KGKQGRFRQNLLGKRVDYSGRSVI VGP L LHQCGLPK+M Sbjct: 302 GRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELHLHQCGLPKEM 361 Query: 373 ALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRL 432 ALELFKPF+ +L G A IK+AK+MVER VW++L+EVI+EHPVLLNRAPTLHRL Sbjct: 362 ALELFKPFVMKRLVNDGYAHNIKSAKRMVERVRPEVWEVLEEVIKEHPVLLNRAPTLHRL 421 Query: 433 GIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILS 492 GIQAFEPVL+EG+AIQ+HP+VC AYNADFDGDQMAVHVPL+ EAQ EAR LM+S+NNIL+ Sbjct: 422 GIQAFEPVLVEGRAIQIHPMVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLSSNNILN 481 Query: 493 PANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRI 552 P +G P+ +P+QD+VLG+YY+T + GEG P+EA Y + SLHA VKVR+ Sbjct: 482 PKDGRPVAIPTQDMVLGIYYLTVEKQGVPGEGKAFKDPEEAVMAYYNNAVSLHAAVKVRM 541 Query: 553 TEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRIL 612 + +TTVGR I ++P+ L NQ + KK +SK+++ CYR L Sbjct: 542 PGMGR------------IETTVGRIIFNEVIPREL--GYYNQVIDKKVLSKIVDDCYRKL 587 Query: 613 GLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGL 672 G T D I GF +A R+G ++GI D+ IP +K EI+ EAE +V ++++Q++ GL Sbjct: 588 GFSATSKLLDGIKKLGFTFATRAGVTIGIQDITIPARKKEILKEAEQQVEKVEQQYRRGL 647 Query: 673 VTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARG 732 +T ERY KVI IW A V+ A+++ L FN +YMMA+SGARG Sbjct: 648 ITEEERYRKVIGIWNDATKEVTDALIETLDK---------------FNPVYMMANSGARG 692 Query: 733 SAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTAN 792 + QIRQLAGMRGLMA P G II+ PI ANFREGL VL+YFISTHGARKGLADTAL+TA+ Sbjct: 693 NIQQIRQLAGMRGLMADPSGRIIDLPIKANFREGLTVLEYFISTHGARKGLADTALRTAD 752 Query: 793 SGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPG 852 SGYLTRRLVDVAQD++V E DCGT +GI +T + +G +V E L DR++GRV EDV P Sbjct: 753 SGYLTRRLVDVAQDVIVREVDCGTGQGIEVTEIKDGNEVIEKLEDRIIGRVALEDVKHPE 812 Query: 853 TADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKG 912 T +IL + E + + VK+RSV++C T +GVC CYGR+LA G ++ G Sbjct: 813 TGEILAFAGEEITESEAAKIVAAGIKKVKIRSVLTCRTRYGVCIKCYGRNLATGRQVDIG 872 Query: 913 EAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGK 972 EA+G+IAAQSIGEPGTQLTMRTFH GG A + +V+ + ++++ + Sbjct: 873 EAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVEELFEARRPKGQAIIAEADG 932 Query: 973 LVITSR---NTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETV--ANWDPHTMPV 1027 V E+++ E G TK Y+VPYGA L DG++V G+ + + +PH + Sbjct: 933 TVEVREVKGRREIEVTAEDG-TKSVYQVPYGARLKVRDGDRVYAGDELTEGSVNPHDLLK 991 Query: 1028 ITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKD 1073 I V G + + Q ++ V++ R + Sbjct: 992 IKGVQGVQIYLLQEVQRVYRLQGVDINDKHIEVMIRQMLRKVKVDE 1037 Score = 309 bits (791), Expect = 6e-82, Method: Composition-based stats. Identities = 142/345 (41%), Positives = 199/345 (57%), Gaps = 11/345 (3%) Query: 1030 EVSGFVRFTDMIDGQT---ITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGN 1086 + G V D+ +T + +E+T + ++ + + +R L G Sbjct: 798 RIIGRVALEDVKHPETGEILAFAGEEITESEAAKIVAAGIKKV---KIRSVLTCRTRYGV 854 Query: 1087 DVLIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDTLARIPQESGGTK--DITGGLPRVAD 1143 + G ++ + V + I G L +GG DIT GLPRV + Sbjct: 855 CIKCYGRNLATGRQVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVEE 914 Query: 1144 LFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGER 1203 LFEARRPK AI+AE G V +E KG+R + +T DG+ +P +L V +G+R Sbjct: 915 LFEARRPKGQAIIAEADGTVEV-REVKGRREIEVTAEDGTKSV-YQVPYGARLKVRDGDR 972 Query: 1204 VERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRK 1263 V GD +++G PHD+L+++GV V Y++ EVQ VYRLQGV INDKHIEV++RQMLRK Sbjct: 973 VYAGDELTEGSVNPHDLLKIKGVQGVQIYLLQEVQRVYRLQGVDINDKHIEVMIRQMLRK 1032 Query: 1264 ATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAA 1323 + G +D L G ++ + NR ++ G AT LLGITKASLAT+SF+SAA Sbjct: 1033 VKVDEPGDTDLLPGGLIDIFEFEDENRRIKNLGGEPATAKPVLLGITKASLATDSFLSAA 1092 Query: 1324 SFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD 1368 SFQETTRVLTEAA+ GK D L GLKENVI+G+L+PAGTG + +++ Sbjct: 1093 SFQETTRVLTEAAIKGKLDLLLGLKENVIIGKLVPAGTGMSRYRN 1137 >UniRef50_A8Z5T2 DNA-directed RNA polymerase subunit beta' n=30 Tax=Bacteroidetes RepID=RPOC_SULMW Length = 1464 Score = 1239 bits (3206), Expect = 0.0, Method: Composition-based stats. Identities = 621/1477 (42%), Positives = 893/1477 (60%), Gaps = 171/1477 (11%) Query: 8 LKAQTKTEEFDAIKIAL--ASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPV 65 K Q K F KI+L +SP+ I S+GE+ KPETINYRT KPER+GLFC +IFGP+ Sbjct: 2 SKKQYKISHFMTTKISLRISSPEEILKDSYGEIIKPETINYRTNKPERNGLFCEKIFGPI 61 Query: 66 KDYECLCGKYKR---------------LKHRGVICEKCGVEVTQTKVRRERMGHIELASP 110 KDYEC CGKYK+ LK +G+ C +CGVE+T+ VRR RMGHI L P Sbjct: 62 KDYECFCGKYKKKLYKEIIRLRQLNKELKVKGLFCNRCGVEITKNTVRRTRMGHINLVVP 121 Query: 111 TAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTN------LERQQILTEEQ 164 HIW +S P++IG +L + + ++ ++Y+E YVVI+ G+ N +++ +LTEE+ Sbjct: 122 IVHIWGFRSTPNKIGSILGLSSQQLDMIIYYERYVVIQPGIANSYNNLSIKKLDLLTEEE 181 Query: 165 YLDALEEFG-----------DEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETK 213 Y L + ++F AKMGAE ++ LL +DLE L++E+ S+ + Sbjct: 182 YTYILNKIPIGNKYLYDNDPNKFIAKMGAECLEELLIRVDLEVLLSDLKKEIKNEESKQR 241 Query: 214 RKKLTKRIKLLEAFV---QSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYR 270 + +L KR+ ++E F+ + GNK E +IL VLPV+PP+LRPLVPLDGG +A+SDLND YR Sbjct: 242 KIELFKRLNVVECFIEGKKKGNKIESIILKVLPVIPPELRPLVPLDGGGYASSDLNDFYR 301 Query: 271 RVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADM 330 R++ RNNRLKRL+ ++AP+II+RNEKRMLQEAVD+LLDN ++ A+ + RPLKSL+D Sbjct: 302 RILIRNNRLKRLIHISAPEIILRNEKRMLQEAVDSLLDNSKKILAVKSESNRPLKSLSDS 361 Query: 331 IKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGL 390 +KGKQGRFRQNLLGKRVDYS RSVI VGP L+LH+CGLPK++A E++KPF+ KL R + Sbjct: 362 LKGKQGRFRQNLLGKRVDYSARSVIVVGPKLKLHECGLPKEIAAEIYKPFLIRKLLERKI 421 Query: 391 ATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLH 450 T+K+AKK++ +++ ++WDIL +++ HPVLLNRAPTLHRLGIQ+F+P LIEGKAI LH Sbjct: 422 VRTVKSAKKLISKKDPIIWDILKYLLKGHPVLLNRAPTLHRLGIQSFQPKLIEGKAILLH 481 Query: 451 PLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGL 510 PLVC+A+NADFDGDQMAVH+PL+ EA LEA+ LM+++ NIL+PANG PI VPSQD+VLGL Sbjct: 482 PLVCSAFNADFDGDQMAVHLPLSNEAILEAKLLMLASQNILNPANGYPITVPSQDMVLGL 541 Query: 511 YYMTRDCVNA-----KGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVA 565 YYMT++ + KGEGM + +E E Y + + +HA +KV++ E + Sbjct: 542 YYMTKELKSTYESKIKGEGMCFSSLEEVEIAYNNKVVEIHAIIKVKVKILE-----NIGL 596 Query: 566 KTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIM 625 + + TTVGR + ++VP + +N+ L K++ K++N + T F D+I Sbjct: 597 ISKIIKTTVGRVLFNIVVPPKV--GYINKLLTNKSLRKIINYILYNTNIPTTAKFLDKIK 654 Query: 626 YTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDI 685 G+ +A + G S ++D+ IP++K ++ A +V+ +++ + GL+T ERYN++IDI Sbjct: 655 DLGYYHAFKGGLSFNLNDISIPKEKKSLVKRAIEKVSLVKDNYNLGLITNNERYNQIIDI 714 Query: 686 WAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRG 745 W N +++ +++ ++ + FNS+YMM DSGAR S QIRQL+GMRG Sbjct: 715 WTNTNVSLTEKVINYMRK-----------SKQGFNSVYMMLDSGARSSKEQIRQLSGMRG 763 Query: 746 LMAKPDG------SIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRR 799 LMAKP IIE PI +NF EGL++L+YFISTHGARKGLADTALKTA++GYLTRR Sbjct: 764 LMAKPQKTSSLGSEIIENPILSNFLEGLSILEYFISTHGARKGLADTALKTADAGYLTRR 823 Query: 800 LVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVP 859 LVD AQD+++ EDDC T GI ++ V + + E L RVLGR+ ++ P ++L+ Sbjct: 824 LVDSAQDVIIQEDDCKTLLGIKISAVKKKEKIIETLSSRVLGRIALNNIYDPTNNNVLIK 883 Query: 860 RNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIA 919 + ++ E+ +L+E+ S+D ++VRS ++C + G+C CYGR+LA G +I KGEAIGVIA Sbjct: 884 SSQMIDEKNINLIEKASIDTIEVRSPLTCKSKTGICRKCYGRNLANGLMIQKGEAIGVIA 943 Query: 920 AQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRN 979 AQSIGEPGTQLT+RTFH+GG A S I+ K G I+ +++ V N ++ SR+ Sbjct: 944 AQSIGEPGTQLTLRTFHVGGTAGNIYEYSKIKAKYDGIIEYEDIQVVKN-----LVISRS 998 Query: 980 TELKLI--DEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRF 1037 +E++L+ + K+PYGA L + + V + + +WDP+ +I E +G +R+ Sbjct: 999 SEIRLLNNHKDKVILMKKKIPYGAKLYVSNKQLVKKNDIICSWDPYNAVIIAEFTGKIRY 1058 Query: 1038 TDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPA 1097 +++ + DE TG + + P LKIV+ + ++ Sbjct: 1059 SNI--------ERDEQTGFKVISERKT-----------PTLKIVNKK--------NEILK 1091 Query: 1098 QYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARR-------- 1149 Y +P A + + DG I+ G L +IP + + DITGGLPR+++LFEAR Sbjct: 1092 SYNIPVGAHLVVNDGDIINEGSILIKIPIKDLKSGDITGGLPRLSELFEARNDDDDDDYY 1151 Query: 1150 ----------------------PKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYE 1187 E + + + Sbjct: 1152 DSDYYDYYDYSDDDDDYDDYDDYYYNYDDDENDNDNDYDYDYDYDYDYDSDSHNSYSHNS 1211 Query: 1188 EMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVK 1247 + + G + ++IL ++G+ A + ++NE+Q+VYR QGVK Sbjct: 1212 YSPSSNDNYDYDYDSDSDYDSDYDYGDISLNEILDIKGLRAAQKKLINEIQEVYRSQGVK 1271 Query: 1248 INDKHIEVIVRQMLRKATIVNAGSSDFLE------------------------------- 1276 INDKH EVIVRQM +K I+ +G + FLE Sbjct: 1272 INDKHFEVIVRQMTQKVEIIKSGDTSFLEGNIEYTDVFLEENKRILNMKFIEESGDSKKF 1331 Query: 1277 --GEQVEYSRVKIANRELEANGK--------VGATYSRDLLGITKASLATESFISAASFQ 1326 G+ V + +K N L+ + K + A + GITKA+L T+SF+SAASFQ Sbjct: 1332 FKGQLVNFHELKKENYLLKLSNKNKILFRDVITAISKPIIQGITKAALQTKSFLSAASFQ 1391 Query: 1327 ETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGY 1363 ETT+VL EAA++ K D L GLKENVI+G IPAGTG Sbjct: 1392 ETTKVLYEAAISNKTDYLNGLKENVILGNKIPAGTGL 1428 >UniRef50_C9RPE5 DNA-directed RNA polymerase n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RPE5_FIBSS Length = 1432 Score = 1238 bits (3204), Expect = 0.0, Method: Composition-based stats. Identities = 568/1225 (46%), Positives = 783/1225 (63%), Gaps = 66/1225 (5%) Query: 154 LERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETK 213 + Q+ + Y + E K+ + + + ++ E + L + E + Sbjct: 212 FRKSQMESFRTYYNNPEAAQKRDRDKIWLKGLAEAVAEFKVDYEAKHSDFVLADAYEEFR 271 Query: 214 RKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVI 273 K T+ N+P WMIL V+PVLPPDLRPLVPL+GGRFATSDLN+LYRRVI Sbjct: 272 HKYPTEA-------RLFANQPSWMILDVIPVLPPDLRPLVPLEGGRFATSDLNELYRRVI 324 Query: 274 NRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKG 333 NRNNRLK+L+D+ P++I+ NEKRMLQEAVD L D+ RR + + RPLKSLA+++KG Sbjct: 325 NRNNRLKKLIDIRTPNVILCNEKRMLQEAVDQLFDSDRR--TVRAGSARPLKSLAELLKG 382 Query: 334 KQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATT 393 KQGRFR NLLGKRVDYSGRSVI V P LRL QCGLPK+MALEL+KPFI +LE G+ T Sbjct: 383 KQGRFRMNLLGKRVDYSGRSVIVVDPELRLDQCGLPKRMALELYKPFIIQRLEEEGIVYT 442 Query: 394 IKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLV 453 K+AKK V+ VWDIL+++I +HPV+LNRAPTLHRLGIQAF P LIEG AI LHPLV Sbjct: 443 HKSAKKYVDANRPEVWDILEQIIEDHPVMLNRAPTLHRLGIQAFYPKLIEGNAIHLHPLV 502 Query: 454 CAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYM 513 C A+N DFDGDQMAVH+PL+ EAQLE R LM+S+NNIL P++G+PI VP QD+VLGLYY+ Sbjct: 503 CPAFNTDFDGDQMAVHLPLSFEAQLECRVLMLSSNNILHPSSGQPITVPKQDMVLGLYYL 562 Query: 514 TRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKD-- 571 T+ N KGEGM P EA Y +G L+A + +++ +K G + L++ Sbjct: 563 TKPRPNRKGEGMHFYAPAEAISAYENGAVDLNANIYLKLKAGQKIYKGSVEKDIILEEDC 622 Query: 572 ---TTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTG 628 TTVGR I IVP L +N+ L K+ I+ ++ Y G + TV + + + G Sbjct: 623 IIKTTVGRIIFNDIVPPAL--GYINETLNKEFITNSIDNLYHRAGNRVTVDYLNNLKAIG 680 Query: 629 FAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAA 688 F +A ++G S+ + D++IP++K E+++ A E+ +I+ ++ G++T GERYN+ ID+W+ Sbjct: 681 FKWATKAGTSIAVADILIPKEKQELLNAATKEIRKIRALYEDGVITDGERYNQTIDVWSK 740 Query: 689 ANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMA 748 V+ D+L + + FN +YMMADSGARG+ I+QLA MRGL Sbjct: 741 TTSNVAAKQWDSLSHD-----------RNGFNPLYMMADSGARGNREYIKQLAAMRGLTQ 789 Query: 749 KP-----DGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDV 803 KP +IE PI + +REGLN ++YFIS+HGARKGLADTALKTA++GYLTRRLVDV Sbjct: 790 KPIKQLGGQEVIENPIKSCYREGLNEMEYFISSHGARKGLADTALKTADAGYLTRRLVDV 849 Query: 804 AQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTL 863 DLV+TE DCGT GI ++ + +G D PL +R+LGR +D+ P T +++V L Sbjct: 850 GLDLVITEKDCGTANGIEVSALKDGDDTVIPLEERLLGRAPVDDIKHPVTGEVIVKAGEL 909 Query: 864 LHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSI 923 ++E+ + + +++RSV++C++ GVCA CYGR L+ G ++ GEA+GV+AA SI Sbjct: 910 VNERDLPKISAAGFEHIRMRSVLTCESRNGVCAKCYGRMLSSGRPVDLGEAVGVLAAHSI 969 Query: 924 GEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELK 983 GEPGT+LT+RTFHIGG S E+ + G IKL ++++ G+ ++ SR EL Sbjct: 970 GEPGTRLTLRTFHIGGVHSPLTVENCKKAIVDGRIKLEQIETI-EHEGQKIVVSRMGELV 1028 Query: 984 LIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDG 1043 + D G K Y++PYG+++ G+ V G+ + WDP+ P+IT V+G V F +M+D Sbjct: 1029 IFDNTGINKGRYQIPYGSIMHVGNNAIVKKGDCMFEWDPYNSPIITNVAGNVVFFNMVDK 1088 Query: 1044 QTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPG 1103 Q G L PA+ I D +G V + LP Sbjct: 1089 Q------------------------HGKNKLHPAIIINDDRGEKVGY--------FMLPD 1116 Query: 1104 KAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIV 1163 AI ++ G +++SG +A++P+ +G T+DITGGLPR+A++FEAR P+ A +A + G+V Sbjct: 1117 GAIPAVKQGDKVASGQVIAKLPRAAGKTRDITGGLPRIAEIFEARVPRNKAFIAPVDGLV 1176 Query: 1164 SFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRL 1223 +G E + + +VI ++G + + +P L V EG+RV G IS+G PHDIL + Sbjct: 1177 KYGNEVRNYQEIVIQQMNGYE-MKMFVPLGIHLIVNEGDRVRAGQKISEGCVDPHDILDI 1235 Query: 1224 RGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYS 1283 G ++VNEVQ VYRLQGV I DKHIE +VRQM+RK I ++G SDFL GE++ Sbjct: 1236 LGPEQAELHLVNEVQAVYRLQGVAIADKHIECVVRQMMRKVRITDSGDSDFLPGEEITKD 1295 Query: 1284 RVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDE 1343 ++ N L A GK ATY LLGITKASLAT+SFISAASFQET ++LT A++ G+ D Sbjct: 1296 SLRTENDRLIALGKAIATYQPMLLGITKASLATDSFISAASFQETQKILTRASIEGRVDP 1355 Query: 1344 LRGLKENVIVGRLIPAGTGYAYHQD 1368 L GLKENVI+GRLIP GTG + +D Sbjct: 1356 LMGLKENVIIGRLIPCGTGARHLRD 1380 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 118/226 (52%), Positives = 166/226 (73%), Gaps = 10/226 (4%) Query: 18 DAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKR 77 I I LASP+ IR WS+GEV KPETINYR+FKPE+DGLFC +IFGP+K++EC CGKYKR Sbjct: 5 GGISIHLASPEQIRFWSYGEVTKPETINYRSFKPEKDGLFCEKIFGPIKNWECNCGKYKR 64 Query: 78 LKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIER 137 ++++GV+C++CGVEVT +KVRRERMGHIEL AH WF+++ P IG LL++ +D++ Sbjct: 65 IRYKGVVCDRCGVEVTHSKVRRERMGHIELVCSLAHTWFVRNQPCVIGALLNLNTKDLDH 124 Query: 138 VLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQE 197 ++Y+E YVVI+ G TNLE+ ++ EE+ + ++E G EF AKMGA AI+ LL S+DL + Sbjct: 125 IIYYEKYVVIDPGTTNLEKNSLIDEEEKQNLIDE-GREFVAKMGAAAIKQLLDSLDLTKL 183 Query: 198 CEQLREELNETNSETKRKKLTKRIKLLEAFVQSG--------NKPE 235 E+LR + + S+TK+ + R+K++EAF +S N PE Sbjct: 184 SEELRLQ-ATSKSKTKQDEAVNRLKVVEAFRKSQMESFRTYYNNPE 228 >UniRef50_A5N4P0 DNA-directed RNA polymerase subunit beta' n=5 Tax=Bacteria RepID=RPOC_CLOK5 Length = 1174 Score = 1222 bits (3161), Expect = 0.0, Method: Composition-based stats. Identities = 566/1118 (50%), Positives = 778/1118 (69%), Gaps = 49/1118 (4%) Query: 13 KTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLC 72 + FDA++I LAS + IR WS GEVKKPETINYRT KPERDGLFC RIFGP KD+EC C Sbjct: 3 ELNNFDALQIGLASTEKIREWSRGEVKKPETINYRTLKPERDGLFCERIFGPQKDWECHC 62 Query: 73 GKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPL 132 GKYKR++++G++C++CGVEVT+ KVRRERMGHIELA+P +HIW+ K +PSR+GL+LDM Sbjct: 63 GKYKRIRYKGIVCDRCGVEVTKAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDMSP 122 Query: 133 RDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGD-EFDAKMGAEAIQALLKS 191 R +E+VLYF SYVV++ T L ++Q+LTE++Y +A++++G+ F A MGAE+++ LL+ Sbjct: 123 RALEKVLYFASYVVLDPKETQLLKKQLLTEKEYREAVDKYGEQNFVASMGAESVKKLLEE 182 Query: 192 MDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRP 251 +DLEQ L+E+L + K+ ++ +R++++E+F +SGN+PEWM++ V+PV+PPDLRP Sbjct: 183 IDLEQLSLVLKEDLKNSTG-QKKIRIIRRLEVVESFRKSGNRPEWMVIDVIPVIPPDLRP 241 Query: 252 LVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGR 311 +V LDGGRFATSDLNDLYRRVINRNNRLK+LLDL APDIIVRNEKRMLQEAVDAL+DNGR Sbjct: 242 MVQLDGGRFATSDLNDLYRRVINRNNRLKKLLDLGAPDIIVRNEKRMLQEAVDALIDNGR 301 Query: 312 RGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKK 371 RGR +TG RPLKSL+DM+KGKQGRFRQNLLGKRVDYSGRSVI VGP L+++QCGLPK+ Sbjct: 302 RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKMYQCGLPKE 361 Query: 372 MALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHR 431 MALELFKPF+ KL RGLA IK+AK+MVER +A VWD+L+EVI +HPVLLNRAPTLHR Sbjct: 362 MALELFKPFVMKKLVERGLAHNIKSAKRMVERVQAQVWDVLEEVISDHPVLLNRAPTLHR 421 Query: 432 LGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNIL 491 LGIQAF+PVL+EG+AI+LHPL C AYNADFDGDQMAVHVPL++EAQ EAR LM++ +NIL Sbjct: 422 LGIQAFQPVLVEGRAIKLHPLSCTAYNADFDGDQMAVHVPLSVEAQSEARFLMLAAHNIL 481 Query: 492 SPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVR 551 P++G+P++VP+QD+VLG YY+T + AKGEG + P E Y+ ++A++KV+ Sbjct: 482 KPSDGKPVVVPTQDMVLGSYYLTVEREGAKGEGRYFSFPDEVIMAYQLKQIDINAKIKVK 541 Query: 552 ITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSI-----------VNQALGKKA 600 +T K +G+ + + + D T G+ I VP+ L + ++ + KK Sbjct: 542 MT---KIIDGKYI--SGIIDATAGKIIFNECVPQDLGFIDRSKPGNEFKLEIDFLVAKKN 596 Query: 601 ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAE 660 + K++N CY G T I D+I G+ Y+ SG +V DM +PE K ++SE++A Sbjct: 597 LGKIINKCYMKHGATKTSIMLDKIKARGYHYSTISGITVSTSDMEVPEAKKRLLSESDAA 656 Query: 661 VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFN 720 V +I++ ++ G ++ ERY +VI+ W + V+ +M+NL FN Sbjct: 657 VDKIEKMYRRGFISEDERYQRVIERWTKTTEDVADELMNNLDK---------------FN 701 Query: 721 SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR 780 I+MMADSGARGS +QI+QLAGMRGLMA P G IIE PI A+FREGL+VL+YFISTHGAR Sbjct: 702 PIFMMADSGARGSKSQIKQLAGMRGLMANPSGKIIELPIRASFREGLDVLEYFISTHGAR 761 Query: 781 KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVL 840 KG ADTALKTA+SGYLTRRLVDV+QD++V E+DCGT+EG ++ + EG +V E L +R+ Sbjct: 762 KGNADTALKTADSGYLTRRLVDVSQDVIVREEDCGTYEGYDVSEIKEGNEVIESLSERLT 821 Query: 841 GRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYG 900 GR +AED++ P I+VP+N+ + + D +E + + VK+RSV +C + GVC+ CYG Sbjct: 822 GRYSAEDIIDPNNHQIIVPKNSYMDSKLADRIEASGIKKVKIRSVFTCKSRHGVCSKCYG 881 Query: 901 RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL 960 ++A I+ GE++G+IAAQSIGEPGTQLTMRTFH GG A + +V+ + Sbjct: 882 MNMATAQKIDIGESVGIIAAQSIGEPGTQLTMRTFHTGGVAGSDITQGLPRVEELFEARK 941 Query: 961 SNVKSVVNSSGKLV---ITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGE-- 1015 ++V+ V T + + +I + G + +Y +P+G+ + +G+ ++ G+ Sbjct: 942 PKGLAIVSEVSGTVKMEETKKKRSVSVITDNG-EEVTYDIPFGSRIKVSNGDLISAGDEV 1000 Query: 1016 TVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLR 1075 T + +PH + I V G + + Q ++ VV+ R Sbjct: 1001 TEGSVNPHDILRIKGVQGVKNYLLSEVQKVYRLQGVDINDKHLEVVIRQMTRKIK----- 1055 Query: 1076 PALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGV 1113 ++ G+ L+PGT + F A V+ G Sbjct: 1056 -----IEESGDTELLPGTMIDIFDFEEENARVEASGGS 1088 Score = 317 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 136/354 (38%), Positives = 190/354 (53%), Gaps = 5/354 (1%) Query: 1017 VANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRP 1076 + + + ++G D+ID + + + S + +R Sbjct: 806 IKEGNEVIESLSERLTGRYSAEDIIDPNNHQIIVPKNSYMDSKLADRIEASGIKKVKIRS 865 Query: 1077 ALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDTLARIPQESGGT--KD 1133 G G +M + V + I G L +GG D Sbjct: 866 VFTCKSRHGVCSKCYGMNMATAQKIDIGESVGIIAAQSIGEPGTQLTMRTFHTGGVAGSD 925 Query: 1134 ITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKW 1193 IT GLPRV +LFEAR+PK AI++E+SG V + K + VIT D + IP Sbjct: 926 ITQGLPRVEELFEARKPKGLAIVSEVSGTVKMEETKKKRSVSVIT--DNGEEVTYDIPFG 983 Query: 1194 RQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHI 1253 ++ V G+ + GD +++G PHDILR++GV V Y+++EVQ VYRLQGV INDKH+ Sbjct: 984 SRIKVSNGDLISAGDEVTEGSVNPHDILRIKGVQGVKNYLLSEVQKVYRLQGVDINDKHL 1043 Query: 1254 EVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKAS 1313 EV++RQM RK I +G ++ L G ++ + N +EA+G A LLGITKA+ Sbjct: 1044 EVVIRQMTRKIKIEESGDTELLPGTMIDIFDFEEENARVEASGGSAAQGRVALLGITKAA 1103 Query: 1314 LATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQ 1367 LATESF+SAASFQETTRVLT+AA+ GK D L GLKENVI+G+LIPAGTG ++ Sbjct: 1104 LATESFLSAASFQETTRVLTDAAIKGKIDPLLGLKENVIIGKLIPAGTGMTRYR 1157 >UniRef50_A9KJL3 DNA-directed RNA polymerase subunit beta' n=170 Tax=Bacteria RepID=RPOC_CLOPH Length = 1255 Score = 1192 bits (3083), Expect = 0.0, Method: Composition-based stats. Identities = 554/1085 (51%), Positives = 740/1085 (68%), Gaps = 48/1085 (4%) Query: 6 KFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPV 65 + + K +DAIKI LASP+ IR WS GEV+KPETINYRT KPE+DGLFC +IFGP Sbjct: 4 EMINESVKDITYDAIKIGLASPEKIREWSRGEVRKPETINYRTLKPEKDGLFCEKIFGPN 63 Query: 66 KDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIG 125 KD+EC CGKYK+++++GV+C++CGVEVT+ VRRERMGHIELA+P +HIW+ K +PSR+G Sbjct: 64 KDWECHCGKYKKIRYKGVVCDRCGVEVTKASVRRERMGHIELAAPVSHIWYFKGIPSRMG 123 Query: 126 LLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAI 185 L+LD+ R +E+VLYF SY+V++ G T+L+ +Q+L E+++ +A +++GD F MGAEAI Sbjct: 124 LILDLSPRTLEKVLYFASYIVLDKGTTDLQYKQVLNEKEFREAYDKYGDRFRVGMGAEAI 183 Query: 186 QALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVL 245 LL+++DLE+E + L+ L E+ KR ++ KR++++EAF +SGNKPEWMI+TV+PV+ Sbjct: 184 MELLEAIDLEKESKDLKRGLKESTG-QKRARIIKRLEVVEAFRESGNKPEWMIMTVVPVI 242 Query: 246 PPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDA 305 PPDLRP+V LDGGRFATSD+NDLYRR+INRNNRLKRLL+L APDIIVRNEKRMLQEAVDA Sbjct: 243 PPDLRPMVQLDGGRFATSDMNDLYRRIINRNNRLKRLLELGAPDIIVRNEKRMLQEAVDA 302 Query: 306 LLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQ 365 L+DNGRRGR +TG RPLKSL+DM+KGKQGRFRQNLLGKRVDYSGRSVI VGP L+++Q Sbjct: 303 LIDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKIYQ 362 Query: 366 CGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNR 425 CGLPK+MA+ELFKPF+ +L +G A IK+AKKMVER + VWDIL+EVIREHPV+LNR Sbjct: 363 CGLPKEMAIELFKPFVMKELVAKGTAHNIKSAKKMVERLQPEVWDILEEVIREHPVMLNR 422 Query: 426 APTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMM 485 APTLHRLGIQAFEPVL+EGKAI+LHPLVC A+NADFDGDQMAVH+PL++EAQ E R L++ Sbjct: 423 APTLHRLGIQAFEPVLVEGKAIKLHPLVCTAFNADFDGDQMAVHLPLSVEAQAECRFLLL 482 Query: 486 STNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLH 545 S NN+L P++G P+ VPSQD+VLG+YY+T GEG EA Y +G+ SLH Sbjct: 483 SPNNLLKPSDGGPVAVPSQDMVLGIYYLTLQKPGDIGEGKYFKSVNEAILAYENGVISLH 542 Query: 546 ARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIV-----------PKGLPYSIVNQ 594 A +KVR T N E V ++ ++TVGR I I+ P+ ++ Sbjct: 543 AMIKVRRTGL----NAEGVEESRTIESTVGRFIFNEIISQDLGFVDRSKPENFLALEIDF 598 Query: 595 ALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEII 654 GKK + K+L C G T D I G+ Y+ R+ +V I DM +PE K +II Sbjct: 599 HTGKKQLKKILEKCINTRGATQTAETLDAIKSLGYKYSTRAAMTVSISDMTVPEAKKDII 658 Query: 655 SEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEE 714 AE +V +I + + GL+T ERY VI+ W A+D ++K ++ L Sbjct: 659 ERAEKQVEDIAKNHRRGLMTEEERYKAVIETWKEADDEITKELLSGLDK----------- 707 Query: 715 KQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFI 774 +N+I+MMADSGARGS QI+QLAGMRGLMA G IE PI ANFREGL+VL+YFI Sbjct: 708 ----YNNIFMMADSGARGSDKQIKQLAGMRGLMADTSGKTIELPIKANFREGLDVLEYFI 763 Query: 775 STHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDC--GTHE--GIMMTPVIEGGD 830 S HGARKGL+DTAL+TA+SGYLTRRLVDV+QDL++ E DC GT E G+ + ++G + Sbjct: 764 SAHGARKGLSDTALRTADSGYLTRRLVDVSQDLIIREVDCGEGTDEIPGMEIKAFMDGKE 823 Query: 831 VKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSV-----DAVKVRSV 885 V E L DR++GR E + +++V +N ++ + + + +K+R+V Sbjct: 824 VIEGLEDRIIGRYACETIYDDN-GELIVKKNHIITPKRAARIVASKAFEDPNATIKIRTV 882 Query: 886 VSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAA 945 +SC + GVCA CYG ++A G + GEA+G+IAAQSIGEPGTQLTMRTFH GG A Sbjct: 883 LSCKSHIGVCAKCYGANMATGEAVQVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDI 942 Query: 946 AESSIQVKNKGSIKLSNVKSVVNSSGKLVI---TSRNTELKLIDEFGRTKES--YKVPYG 1000 + +V+ + +++ G V T + E+ + T ES Y +PYG Sbjct: 943 TQGLPRVEELFEARKPKGLAIIAEFGGTVTIKDTKKKREVIVTRTSNDTLESKAYLIPYG 1002 Query: 1001 AVLAKGDGEQVAGGETV--ANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSS 1058 + + D + + G+ + + +PH + I V + + Q E+ Sbjct: 1003 SRIKVMDEQVIEAGDELTEGSVNPHDILKIKGVRAVQDYMIQEVQRVYRLQGVEINDKHI 1062 Query: 1059 LVVLD 1063 V++ Sbjct: 1063 EVIVR 1067 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 153/392 (39%), Positives = 217/392 (55%), Gaps = 18/392 (4%) Query: 984 LIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDG 1043 +I E + + ++P + A DG++V G +I + + D +G Sbjct: 797 IIREVDCGEGTDEIPGMEIKAFMDGKEVIEG--------LEDRIIGRYACETIYDD--NG 846 Query: 1044 QTITRQTDELTGLSSLVVLDSA--ERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFL 1101 + I ++ +T + ++ S E +R L G G +M + Sbjct: 847 ELIVKKNHIITPKRAARIVASKAFEDPNATIKIRTVLSCKSHIGVCAKCYGANMATGEAV 906 Query: 1102 PGKAIVQLEDGVQI-SSGDTLARIPQESGGTK--DITGGLPRVADLFEARRPKEPAILAE 1158 V + I G L +GG DIT GLPRV +LFEAR+PK AI+AE Sbjct: 907 QVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVEELFEARKPKGLAIIAE 966 Query: 1159 ISGIVSFGKETKGKRRLVIT--PVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEA 1216 G V+ K+TK KR +++T D + +IP ++ V + + +E GD +++G Sbjct: 967 FGGTVTI-KDTKKKREVIVTRTSNDTLESKAYLIPYGSRIKVMDEQVIEAGDELTEGSVN 1025 Query: 1217 PHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLE 1276 PHDIL+++GV AV Y++ EVQ VYRLQGV+INDKHIEVIVRQML+K + N G ++FL Sbjct: 1026 PHDILKIKGVRAVQDYMIQEVQRVYRLQGVEINDKHIEVIVRQMLKKVRVENNGDAEFLP 1085 Query: 1277 GEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAA 1336 G V+ N L A G A + +LGITKASLAT SF+SAASFQETT+VLTEAA Sbjct: 1086 GTMVDILEYNDVNESLAAKGLEQAEGKQVMLGITKASLATNSFLSAASFQETTKVLTEAA 1145 Query: 1337 VAGKRDELRGLKENVIVGRLIPAGTGYAYHQD 1368 + GK D L GLKENVI+G+LIPAGTG ++++ Sbjct: 1146 IKGKIDPLIGLKENVIIGKLIPAGTGMKHYRN 1177 >UniRef50_B0S2E5 DNA-directed RNA polymerase subunit beta' n=47 Tax=Clostridia RepID=RPOC_FINM2 Length = 1202 Score = 1177 bits (3046), Expect = 0.0, Method: Composition-based stats. Identities = 540/1065 (50%), Positives = 731/1065 (68%), Gaps = 39/1065 (3%) Query: 15 EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74 F+A+KI LASPD IR WS+GEVKKPETINYRT KPE++GLFC +IFGP KDYEC CGK Sbjct: 5 NTFEAMKIGLASPDKIRQWSWGEVKKPETINYRTLKPEKEGLFCEKIFGPTKDYECNCGK 64 Query: 75 YKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRD 134 YKR++++G++CEKCGVEVT++KVRRERMGHIELA+P +HIW+ K +PSR+GLLLDM R Sbjct: 65 YKRIRYKGIVCEKCGVEVTKSKVRRERMGHIELATPVSHIWYFKGIPSRMGLLLDMSPRA 124 Query: 135 IERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDE--FDAKMGAEAIQALLKSM 192 +E+VLYF S+VVI+ G T+L +Q+LTE++Y + +++ ++ F AKMGAEAI+ LL+ + Sbjct: 125 LEKVLYFASFVVIDPGKTDLYEKQLLTEQEYEEYCDKYEEDVDFRAKMGAEAIKELLQKI 184 Query: 193 DLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPL 252 DL++E + L E + + K ++ +R++++EAF++S N P WMI+ V+PV+PPD+RP+ Sbjct: 185 DLQEEYKNLTETFEGSTGQKKV-RILRRLEVVEAFIESKNDPSWMIMDVIPVIPPDIRPM 243 Query: 253 VPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRR 312 V L+GGRFATSDLNDLYRRVINRNNRLKRLLD+ +P+IIVRNEKRMLQEAVDAL+DNGRR Sbjct: 244 VQLEGGRFATSDLNDLYRRVINRNNRLKRLLDIGSPEIIVRNEKRMLQEAVDALIDNGRR 303 Query: 313 GRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKM 372 G+ +TG RPLKSL+DM+KGK GRFRQNLLGKRVDYSGRSVI +GP L+ +QCGLPKKM Sbjct: 304 GKPVTGPGNRPLKSLSDMLKGKSGRFRQNLLGKRVDYSGRSVIVIGPNLKFYQCGLPKKM 363 Query: 373 ALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRL 432 ALELFKPF+ +L R ++ +K AKK+VERE VWD+L+++I +HPVLLNRAPTLHRL Sbjct: 364 ALELFKPFVIRELVKREISHNVKNAKKLVERENDKVWDVLEDIIVDHPVLLNRAPTLHRL 423 Query: 433 GIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILS 492 GIQAFEP+L+EGKAI+LHPLVC AYNADFDGDQMAVH+PL+ EAQ EAR LM+STNNIL+ Sbjct: 424 GIQAFEPILVEGKAIKLHPLVCTAYNADFDGDQMAVHLPLSPEAQAEARLLMLSTNNILA 483 Query: 493 PANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRI 552 P +G+PI PSQD+VLG +YMT KGEG++ E Y +L VKVR Sbjct: 484 PKDGKPITTPSQDMVLGSFYMTTRKEGQKGEGLIFKDIDEMMLAYAMHYVTLQTIVKVRR 543 Query: 553 TEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQ---------ALGKKAISK 603 D ++V ++TVGR I +P+ L N+ + KK +SK Sbjct: 544 NSVNNDGTSKIV------ESTVGRFIFNEGIPQDLGMVNRNEDPYSLEVDLQVDKKMLSK 597 Query: 604 MLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAE 663 +++ +R G T D I G+ Y+ ++ + D+ IP+ K II +AE + Sbjct: 598 IIDLTFRRYGNIRTAELLDYIKSMGYKYSTIGALTISMGDITIPDSKKGIIEQAEQRIDM 657 Query: 664 IQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIY 723 +Q+ + G +T ERY KVI+IW V++A+M NL + N++ Sbjct: 658 VQDIYLQGDITNEERYKKVIEIWEQCIKDVTRALMTNLPAD---------------NNLN 702 Query: 724 MMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGL 783 +MA SGARGS QIRQL GMRGLM+ G+ IE PIT+NFREGL+V ++FISTHG+RKGL Sbjct: 703 IMAVSGARGSENQIRQLGGMRGLMSDTAGNTIEIPITSNFREGLSVQEFFISTHGSRKGL 762 Query: 784 ADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRV 843 +DTAL+TA+SGYLTRRLVDV+QD+++TEDDCGT E I+ + +G E L+ R++GR Sbjct: 763 SDTALRTADSGYLTRRLVDVSQDVIITEDDCGTDEYIVAKEIKDGNRQVEDLKSRIIGRY 822 Query: 844 TAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDL 903 ED+L T +I+V +N +++E + +E + VKVRSV+ C GVCA CYGR+L Sbjct: 823 AFEDILDLDTGEIIVHKNDMINEAIAERIESKGIKEVKVRSVLGCKMKHGVCAKCYGRNL 882 Query: 904 ARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSN- 962 A G +N GEA+G+IAAQSIGEPGTQLTMRTFH GG A +V+ + Sbjct: 883 ATGKPVNIGEAVGIIAAQSIGEPGTQLTMRTFHSGGIAGVGITSGLPRVEELFEARKPKG 942 Query: 963 VKSVVNSSG--KLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETV--A 1018 + + G K+ + ++ + E G ++ Y++PYGA + +G+ V GE + Sbjct: 943 LAYITEIEGTVKIQENKKRNDVIVTSEDG-EEQVYQIPYGAHIRVNEGDHVEKGEPLTEG 1001 Query: 1019 NWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLD 1063 + +P + + G + + Q ++ +++ Sbjct: 1002 SINPQDILRVNGAEGVRDYIIREVQKVYRLQGVDIDDKHIEIIIR 1046 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 148/367 (40%), Positives = 200/367 (54%), Gaps = 7/367 (1%) Query: 1029 TEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDV 1088 + + G F D++D T + ++ + + +R L G Sbjct: 816 SRIIGRYAFEDILDLDTGEIIVHKNDMINEAIAERIESKGIKEVKVRSVLGCKMKHGVCA 875 Query: 1089 LIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDTLARIPQESGGTKD--ITGGLPRVADLF 1145 G ++ + V + I G L SGG IT GLPRV +LF Sbjct: 876 KCYGRNLATGKPVNIGEAVGIIAAQSIGEPGTQLTMRTFHSGGIAGVGITSGLPRVEELF 935 Query: 1146 EARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVE 1205 EAR+PK A + EI G V +E K + +++T DG + IP + V EG+ VE Sbjct: 936 EARKPKGLAYITEIEGTVKI-QENKKRNDVIVTSEDGEEQV-YQIPYGAHIRVNEGDHVE 993 Query: 1206 RGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKAT 1265 +G+ +++G P DILR+ G V YI+ EVQ VYRLQGV I+DKHIE+I+RQM+ K Sbjct: 994 KGEPLTEGSINPQDILRVNGAEGVRDYIIREVQKVYRLQGVDIDDKHIEIIIRQMMSKIK 1053 Query: 1266 IVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASF 1325 + +G S FL G V+ K+ N +L GK AT + L+GITKASLATESF+SAASF Sbjct: 1054 VEESGDSGFLSGSVVDARDFKMTNEQLIKEGKTPATGTHSLMGITKASLATESFLSAASF 1113 Query: 1326 QETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQVT 1385 QETTRVLTE ++ GK D L GLKENVI+G+LIPAGTG A + DR+ G+A + Sbjct: 1114 QETTRVLTETSIKGKVDHLIGLKENVIIGKLIPAGTGIAKY-DRIEVDYDGKA-EDDMIE 1171 Query: 1386 AEDASAS 1392 AE A AS Sbjct: 1172 AEKAQAS 1178 >UniRef50_C7GZQ7 DNA-directed RNA polymerase n=2 Tax=Clostridiales RepID=C7GZQ7_9FIRM Length = 1240 Score = 1167 bits (3019), Expect = 0.0, Method: Composition-based stats. Identities = 552/1082 (51%), Positives = 738/1082 (68%), Gaps = 47/1082 (4%) Query: 6 KFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPV 65 +F K + +EF+++++ LAS + I WS GEV KPETINYRT KPE+DGLFC +IFGP Sbjct: 3 RFEKEKETVKEFESLRVGLASKEKILEWSRGEVTKPETINYRTLKPEKDGLFCEKIFGPA 62 Query: 66 KDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIG 125 KD+EC CGK+K+ +HRG++C+KCGVEVT+ VRRERMGHI+LA P +HIW+ K +PSR+ Sbjct: 63 KDFECSCGKFKKREHRGIVCDKCGVEVTKKDVRRERMGHIKLAGPVSHIWYFKGVPSRMS 122 Query: 126 LLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALE-----EFGDEFDAKM 180 LLLD+P +++E+VLYF SYVV+E G + L + ++ EE++ A E + +F A+M Sbjct: 123 LLLDIPPKNLEKVLYFASYVVLEPGDSGLNYKDVIGEEEFRAASETATGSKSKKKFRAEM 182 Query: 181 GAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT 240 GA AIQ LL+ +D E+ ++++ E+ T S K KL +R+++ EAF SGNKPEWMIL Sbjct: 183 GAAAIQELLRDVDPEKIVKEIKGEIEGT-SGQKHTKLARRLEVAEAFRSSGNKPEWMILD 241 Query: 241 VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ 300 V+PV+PPDLRP+V LDGGRFATSDLNDLYRRVINRNNRL + +D+ AP II RNE+RMLQ Sbjct: 242 VIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLSKFIDMGAPAIIQRNERRMLQ 301 Query: 301 EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360 EAVD+L+DNGRRG+A++GS RPLKSL+DM+KGKQGRFRQNLLGKRVDYSGRSVI VGP Sbjct: 302 EAVDSLIDNGRRGKAVSGSGGRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPE 361 Query: 361 LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP 420 L+ +QCGLPK MALELFK FI KL GLA IK+AKKMVE + VWD+L++VI+EHP Sbjct: 362 LKFYQCGLPKMMALELFKTFIMKKLTEEGLAINIKSAKKMVEEYDDAVWDVLEDVIKEHP 421 Query: 421 VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480 V+LNRAPTLHRLGIQAFEPVL+EGKAI+LHPLVC A+NADFDGDQMAVH+PL+LEAQ EA Sbjct: 422 VMLNRAPTLHRLGIQAFEPVLVEGKAIKLHPLVCTAFNADFDGDQMAVHLPLSLEAQAEA 481 Query: 481 RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT------RDCVNAKGEGMVLTGPKEAE 534 R LM+STNNIL+P +G PI VP+QD++LG Y++T RD KG+G + +E Sbjct: 482 RFLMLSTNNILAPKDGSPITVPTQDMILGSYFLTHGGIESRDTEAEKGDGKCFSDHEEML 541 Query: 535 RLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYS---- 590 Y G+ +HA+VKVR + D +G+LV ++TVGR IL +P+ L + Sbjct: 542 MAYMEGIVGIHAKVKVRRHLNKDDKSGKLV------ESTVGRFILNEKIPQDLGFVNREE 595 Query: 591 -----IVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMV 645 V+ K + ++++ CY+ G T I D I GF Y+ ++ I DM Sbjct: 596 DPYALEVDFLCAKDKLREIIDKCYKKHGNTKTAIMLDYIKEMGFRYSTLGAITISISDME 655 Query: 646 IPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTET 705 IPE K II AE EVA+ E F++GL + ERY KVI+IW A + V+ A+MD+L T Sbjct: 656 IPEAKKTIIDAAEDEVAKCDEAFENGLYSKEERYGKVINIWDKATNDVADALMDSLGT-- 713 Query: 706 VINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFRE 765 N++Y+MA SGARGS QIRQ+ GMRGLMA G IE PI ANFRE Sbjct: 714 -------------LNNLYIMAHSGARGSKNQIRQIGGMRGLMANATGKTIEIPIKANFRE 760 Query: 766 GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPV 825 GL+VL+YFIST+GARKGLADTAL+TA+SGYLTRRLVDV+ +++VTE+DC T EG+ + Sbjct: 761 GLSVLEYFISTNGARKGLADTALRTADSGYLTRRLVDVSHNVIVTEEDCNTDEGVYVEAF 820 Query: 826 IEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSV 885 EG V EPL R+ GR AED+L +I+ +N + + +E+ ++ VK+RSV Sbjct: 821 TEGKQVIEPLAQRITGRTAAEDILD-SDGNIITAKNDEISDDDAKRIEKLGIERVKIRSV 879 Query: 886 VSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAA 945 ++C+ GVCA CYGR+LA G +N+GEA+G++AAQSIGEPGTQLTMRTFH GG A Sbjct: 880 MTCECKSGVCAKCYGRNLATGEEVNRGEAVGIMAAQSIGEPGTQLTMRTFHTGGVAGSDI 939 Query: 946 AESSIQVKNKGSIKLSN-VKSVVNSSGKLVITSRNTELKL-IDEFGRTKESYKVPYGAVL 1003 + +V + + + + GK+ R + K + G ++ Y++PYGA L Sbjct: 940 TQGLPRVVELFEARQPKGLAEICRADGKVTDILRQGDGKFEVIVSGEEEQRYEIPYGARL 999 Query: 1004 AKGDGEQVAGGETVANWDPHTMPVIT--EVSGFVRFTDMIDGQTITRQTDELTGLSSLVV 1061 + ++V G+ + + ++ V+G + + +Q ++ V+ Sbjct: 1000 SVKKDDEVKAGQNITEGPLYPEDILEHVGVTGVYDYLVKEVQKVYKQQGVDINDKHIEVI 1059 Query: 1062 LD 1063 + Sbjct: 1060 VS 1061 Score = 282 bits (721), Expect = 7e-74, Method: Composition-based stats. Identities = 150/448 (33%), Positives = 219/448 (48%), Gaps = 19/448 (4%) Query: 941 ASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYG 1000 A+ I +K LS ++ ++++G + +T L+ D T+ V + Sbjct: 743 ANATGKTIEIPIKANFREGLSVLEYFISTNGARKGLA-DTALRTADSGYLTRRLVDVSHN 801 Query: 1001 AVLAKGD-----GEQVAGGETVANWDPHTMPVITEVSGFVRFTDMID--GQTITRQTDEL 1053 ++ + D G V P+ ++G D++D G IT + DE+ Sbjct: 802 VIVTEEDCNTDEGVYVEA---FTEGKQVIEPLAQRITGRTAAEDILDSDGNIITAKNDEI 858 Query: 1054 TGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGV 1113 + + + +R + G G ++ + V + Sbjct: 859 SDDDAKRIEKLG---IERVKIRSVMTCECKSGVCAKCYGRNLATGEEVNRGEAVGIMAAQ 915 Query: 1114 QI-SSGDTLARIPQESGGT--KDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETK 1170 I G L +GG DIT GLPRV +LFEAR+PK A + G V+ Sbjct: 916 SIGEPGTQLTMRTFHTGGVAGSDITQGLPRVVELFEARQPKGLAEICRADGKVTDILRQG 975 Query: 1171 GKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVT 1230 + VI G + IP +L+V + + V+ G I++GP P DIL GV V Sbjct: 976 DGKFEVIVS--GEEEQRYEIPYGARLSVKKDDEVKAGQNITEGPLYPEDILEHVGVTGVY 1033 Query: 1231 RYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANR 1290 Y+V EVQ VY+ QGV INDKHIEVIV +ML KA ++ AG ++ + G S + AN+ Sbjct: 1034 DYLVKEVQKVYKQQGVDINDKHIEVIVSKMLSKARVITAGDTNLMPGGLYALSEINNANK 1093 Query: 1291 ELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKEN 1350 + + GK AT R LLGITKASL T+SF+SAASFQETTR+LT+AA GK+D L+GLKEN Sbjct: 1094 KAKEEGKKAATSKRVLLGITKASLETDSFLSAASFQETTRMLTDAATKGKKDRLKGLKEN 1153 Query: 1351 VIVGRLIPAGTGYAYHQDRMRRRAAGEA 1378 VIVG+L+PAGTG +++ E Sbjct: 1154 VIVGKLVPAGTGMKRYKNIGLDYGVNEV 1181 >UniRef50_Q04E86 DNA-directed RNA polymerase subunit beta' n=228 Tax=cellular organisms RepID=RPOC_OENOB Length = 1233 Score = 1161 bits (3004), Expect = 0.0, Method: Composition-based stats. Identities = 524/1103 (47%), Positives = 727/1103 (65%), Gaps = 58/1103 (5%) Query: 13 KTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLC 72 +F++++I LASP IR WS+GEVKKPETINYRT K ERDGLF RIFGP+KDYEC C Sbjct: 4 DVNKFESMQIGLASPAKIREWSYGEVKKPETINYRTLKAERDGLFDERIFGPIKDYECAC 63 Query: 73 GKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPL 132 GKYKR++++G++C++CGVEVT +KVRRERMGHIELA+P HIW+ K +PSR+GL+LDM Sbjct: 64 GKYKRIRYKGIVCDRCGVEVTSSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLILDMSP 123 Query: 133 RDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFG-DEFDAKMGAEAIQALLKS 191 R +E ++YF SYVVI G T LE++Q++TE +Y +++G D FDAKMGAEAI+ LL Sbjct: 124 RSLEEIIYFASYVVINPGNTPLEKKQLITEAEYRQYQDQYGTDTFDAKMGAEAIKELLAE 183 Query: 192 MDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRP 251 +DLE++ ++L+ EL + KR + +R+ ++EAF+QSGNKPEWM++ V+PV+PPDLRP Sbjct: 184 VDLEKQAKELKNELKDATG-QKRTRAVRRLDIVEAFIQSGNKPEWMVMDVVPVIPPDLRP 242 Query: 252 LVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGR 311 +V L+GGRFATSDLNDLYRRVINRNNRLKRLLDL AP IIV+NEKRMLQEAVDAL+DNGR Sbjct: 243 MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPGIIVQNEKRMLQEAVDALIDNGR 302 Query: 312 RGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKK 371 RGR ++G RPLKSL+ ++KGKQGRFRQNLLGKRVDYSGRSVI VGP+L+++Q GLP++ Sbjct: 303 RGRPVSGPGNRPLKSLSHLLKGKQGRFRQNLLGKRVDYSGRSVIDVGPFLKMNQMGLPRQ 362 Query: 372 MALELFKPFIYGKLEL----RGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAP 427 MA+ELFKPFIY +L G A +++A+ +VER E VV D+L+EV++EHPVLLNRAP Sbjct: 363 MAVELFKPFIYNRLIELGTENGGANNLRSARCLVERHEDVVQDVLEEVVKEHPVLLNRAP 422 Query: 428 TLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMST 487 TLHRLGIQAFEPVL+ GKA++LHPLV AYNADFDGDQMA+HVPL+ EAQ EAR LM++ Sbjct: 423 TLHRLGIQAFEPVLVSGKAMRLHPLVTTAYNADFDGDQMAIHVPLSDEAQAEARLLMLAA 482 Query: 488 NNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHAR 547 ++IL+P +G+PI+ PSQD+ +G YY+T + KGEGM+ + E + ++ LH R Sbjct: 483 SHILAPKDGKPIVAPSQDMTIGNYYLTTEEAGIKGEGMIFSSADEVKMALQNHEVELHTR 542 Query: 548 VKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPY------------------ 589 + + + ++K + + TTVG+ I I+P PY Sbjct: 543 IGIAASSFDKAKPFTDHQRARIMVTTVGKVIFNEILPDDFPYINEPKSENFNGIDDRFFL 602 Query: 590 ------------SIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGA 637 +N +S ++ Y + T + D + G+ + RSG Sbjct: 603 DPGTDIVGWFKNESLNGPFKSGFLSDIIAQIYARYQVTRTSVLLDDMKDLGYDISTRSGL 662 Query: 638 SVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAM 697 +V + D+ +K E++ EA +VA+I +QF+ GL+T ERY +V W+ A D++ + Sbjct: 663 TVAMSDVTELPEKGEVLKEAHEKVAKITKQFRRGLLTDDERYIQVTQTWSDAQDKIKSML 722 Query: 698 MDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIET 757 + + ++ N I+MM+DSGARG+ + QLAGMRGLMA P+G +IE Sbjct: 723 IASFDSK---------------NPIFMMSDSGARGNISNFVQLAGMRGLMAAPNGKVIEL 767 Query: 758 PITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTH 817 P+TANFREGL+VL+ FISTHGARKG+ DTALKTANSGYLTRRLVDVAQ+++V E+DCGT Sbjct: 768 PVTANFREGLSVLEMFISTHGARKGMTDTALKTANSGYLTRRLVDVAQEVIVREEDCGTD 827 Query: 818 EGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSV 877 G+ ++ +++G +V EPL DR+LGR + V+ P T +++ +N ++ E D + + + Sbjct: 828 RGLDVSAIMDGNEVIEPLYDRILGRYAMKPVIDPKTGEVIAKKNQMIDEHVADQIIDAGI 887 Query: 878 DAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHI 937 V +RS+ +C T+ GVC CYGR++A G I+ GEA+G +AAQSIGEPGTQLTMRTFH Sbjct: 888 QTVTIRSIFTCRTEHGVCVKCYGRNMATGDIVEVGEAVGTVAAQSIGEPGTQLTMRTFHT 947 Query: 938 GGAA-SRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSR----NTELKLIDEFGRTK 992 GG A S + +V+ + ++ ++ V + + + E Sbjct: 948 GGVALSEDITQGLPRVQEIFEARNPKGRAEISEVTGKVTSIEENPADRTKTVTIEGETDT 1007 Query: 993 ESYKVPYGAVLAKGDGEQVAGGETVAN--WDPHTMPVITEVSGFVRFTDMIDGQTITRQT 1050 Y +P A L +G+++ E + DP + ++ + + Q Sbjct: 1008 REYVLPISARLRVAEGDEIHRSEAINEGPLDPKELIKVSSTLKTENYMLAEVQKVYRMQG 1067 Query: 1051 DELTGLSSLVVLDSAERTAGGKD 1073 + V++ R D Sbjct: 1068 VGIADKHVEVMVRQMLRKVRVMD 1090 Score = 305 bits (781), Expect = 9e-81, Method: Composition-based stats. Identities = 134/370 (36%), Positives = 194/370 (52%), Gaps = 9/370 (2%) Query: 1025 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ 1084 P+ + G +ID +T + + V + +R Sbjct: 843 EPLYDRILGRYAMKPVIDPKTGEVIAKKNQMIDEHVADQIIDAGIQTVTIRSIFTCRTEH 902 Query: 1085 GNDVLIPGTDMPAQYFLPGK-AIVQLEDGVQISSGDTLARIPQESGGT---KDITGGLPR 1140 G V G +M + A+ + G L +GG +DIT GLPR Sbjct: 903 GVCVKCYGRNMATGDIVEVGEAVGTVAAQSIGEPGTQLTMRTFHTGGVALSEDITQGLPR 962 Query: 1141 VADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE 1200 V ++FEAR PK A ++E++G V+ +E R +T +D E ++P +L V E Sbjct: 963 VQEIFEARNPKGRAEISEVTGKVTSIEENPADRTKTVTIEGETDTREYVLPISARLRVAE 1022 Query: 1201 GERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM 1260 G+ + R + I++GP P +++++ Y++ EVQ VYR+QGV I DKH+EV+VRQM Sbjct: 1023 GDEIHRSEAINEGPLDPKELIKVSSTLKTENYMLAEVQKVYRMQGVGIADKHVEVMVRQM 1082 Query: 1261 LRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFI 1320 LRK +++ G +D L GE ++ + + AN + +G+ AT LLGITKASL T SF+ Sbjct: 1083 LRKVRVMDPGQTDLLPGELLDIADFRRANAKTILSGQTAATSRPVLLGITKASLETNSFL 1142 Query: 1321 SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPA 1380 SAASFQETTRVLT+AA+ GK D L GLKENVI+G++IPAGTG A + R E A Sbjct: 1143 SAASFQETTRVLTDAAIRGKNDPLVGLKENVIIGKVIPAGTGVAEY-----RHIKDEVVA 1197 Query: 1381 APQVTAEDAS 1390 AP E Sbjct: 1198 APVEPLEKIP 1207 >UniRef50_A8YXJ9 DNA-directed RNA polymerase subunit beta' n=25 Tax=Firmicutes RepID=RPOC_LACH4 Length = 1217 Score = 1158 bits (2995), Expect = 0.0, Method: Composition-based stats. Identities = 508/1092 (46%), Positives = 717/1092 (65%), Gaps = 58/1092 (5%) Query: 13 KTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLC 72 +F++++I LASP+ IRSWS+GEVKKPETINYRT KPE+DGLF RIFGP KD+ C C Sbjct: 3 DVNKFESMQIGLASPNKIRSWSYGEVKKPETINYRTLKPEKDGLFDERIFGPTKDWSCAC 62 Query: 73 GKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPL 132 GKYK +++RG++C++CGVEVT +KVRRERMGHIELA+P HIW+ K +PSR+GL+LD+ Sbjct: 63 GKYKGVRYRGIVCDRCGVEVTSSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLVLDISP 122 Query: 133 RDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSM 192 + +E V+YF +Y+VI+ G T+LE +Q+LTE +Y + ++G+ F+AKMGAEAI+ LLK + Sbjct: 123 KLLEEVIYFAAYIVIDPGDTDLEPKQLLTEAEYREQKAKYGNRFEAKMGAEAIRELLKKV 182 Query: 193 DLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPL 252 DL++E + L++EL T + KR + +R+ +L+ F SGNKPEWM++ +PV+PPDLRP+ Sbjct: 183 DLDKEVKDLKKELQ-TATGQKRTRAIRRLDILDTFKNSGNKPEWMVMDAVPVIPPDLRPM 241 Query: 253 VPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRR 312 V L+GGRFATSDLNDLYRRVINRNNRLKRLLDL AP+IIV+NEKRMLQEAVDAL+DNGRR Sbjct: 242 VQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPNIIVQNEKRMLQEAVDALIDNGRR 301 Query: 313 GRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKM 372 GR + G RPLKSL+ M+KGKQGRFRQNLLGKRVDYSGRSVI V P L+ +QCG+P+ M Sbjct: 302 GRPVVGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVSPKLKFYQCGVPRPM 361 Query: 373 ALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRL 432 ALELFKPF+ +L RG+A+ IK AK+ ++ E+ +WD+L++VI+E PVLLNRAPTLHRL Sbjct: 362 ALELFKPFVMHELVKRGIASNIKNAKRKIDSEDDDIWDVLEDVIKERPVLLNRAPTLHRL 421 Query: 433 GIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILS 492 IQAFEPVL+ GK+I+LHPL C AYNADFDGDQMA+HVPL+ EA E+R LM++ ++IL+ Sbjct: 422 SIQAFEPVLVPGKSIRLHPLACEAYNADFDGDQMAIHVPLSDEAVAESRLLMLAAHHILA 481 Query: 493 PANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRI 552 P +G+PI+ PSQD+VLG Y++T+ +GEGM+ + P EA Y +G H + + Sbjct: 482 PKDGKPIVTPSQDIVLGNYWLTQAERGREGEGMIFSSPAEATVAYENGDIHYHTIIGMSA 541 Query: 553 TEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPY----------------------- 589 K + TT G+ + + P Y Sbjct: 542 DAMPKKPWPQGHEHGIFI-TTYGKLVFNQLFPDDYFYINEPTEENLNNPLDAKYFLGEGQ 600 Query: 590 -----------SIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGAS 638 ++ +S + T Y+ ++ T + D + G+ + SG + Sbjct: 601 DIHDKIDEVGDDLIATPFKSSFLSDSIATIYKYYKVQRTSEYLDDLKKLGYTSSTTSGIT 660 Query: 639 VGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMM 698 +G++D+ + K E +++A +V + +QF+ GL+T ER+++VI IW A D + + Sbjct: 661 IGMNDVPEIKDKDEKVAKARKQVDIVSKQFRRGLITEQERHDRVISIWNACKDEIQNEI- 719 Query: 699 DNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETP 758 + N I +MADSGARG+ + QLAGMRGLMA P+G + E P Sbjct: 720 --------------AQIHSPRNPISIMADSGARGNISNFTQLAGMRGLMATPNGGLFEIP 765 Query: 759 ITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHE 818 +T+NF+EGL+VL+ F+STHGARKG+ DTALKTA SGYLTRRLVDVAQD+++ +DDCGT Sbjct: 766 VTSNFKEGLSVLELFMSTHGARKGMTDTALKTAQSGYLTRRLVDVAQDVIIRDDDCGTDR 825 Query: 819 GIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVD 878 GI ++ ++EG ++ EPL DR++GR TAE V P T + +V R+ ++ E + + V Sbjct: 826 GITVSAIMEGDEMIEPLFDRLVGRFTAETVKDPKTGEAIVGRDVMMDENMAHKICDAGVT 885 Query: 879 AVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIG 938 VK+RS+++CDT GVC CYG +LA G + GEA+G +AAQSIGEPGTQLT+RTFH G Sbjct: 886 HVKIRSILTCDTPHGVCRKCYGMNLATGEEVEVGEAVGTVAAQSIGEPGTQLTLRTFHNG 945 Query: 939 GAASR-AAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTE----LKLIDEFGRTKE 993 G A + +V+ + ++ ++ ++ + + ++ + Sbjct: 946 GVAGAEDITQGLPRVQELFEARNPKGRATISEVDGVIDSIQENPADHTREITVKGKIDTR 1005 Query: 994 SYKVPYGAVLAKGDGEQVAGGE--TVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTD 1051 SY VPY A +A +G+ V G+ T+ + DP + +T+ ++ + Q Sbjct: 1006 SYSVPYTASVAVSEGDYVHRGDKLTLGSVDPKELIQVTDTLTTEKYILAEVQKAYRMQGV 1065 Query: 1052 ELTGLSSLVVLD 1063 ++ V+ Sbjct: 1066 DIADKHVEVLTR 1077 Score = 291 bits (746), Expect = 9e-77, Method: Composition-based stats. Identities = 121/362 (33%), Positives = 187/362 (51%), Gaps = 12/362 (3%) Query: 1017 VANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGK---- 1072 + D P+ + G + D +T + + G ++ + A + Sbjct: 832 IMEGDEMIEPLFDRLVGRFTAETVKDPKT----GEAIVGRDVMMDENMAHKICDAGVTHV 887 Query: 1073 DLRPALKIVDAQGNDVLIPGTDMPAQYFLPGK-AIVQLEDGVQISSGDTLARIPQESGGT 1131 +R L G G ++ + A+ + G L +GG Sbjct: 888 KIRSILTCDTPHGVCRKCYGMNLATGEEVEVGEAVGTVAAQSIGEPGTQLTLRTFHNGGV 947 Query: 1132 ---KDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEE 1188 +DIT GLPRV +LFEAR PK A ++E+ G++ +E IT D Sbjct: 948 AGAEDITQGLPRVQELFEARNPKGRATISEVDGVIDSIQENPADHTREITVKGKIDTRSY 1007 Query: 1189 MIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKI 1248 +P + V EG+ V RGD ++ G P +++++ +YI+ EVQ YR+QGV I Sbjct: 1008 SVPYTASVAVSEGDYVHRGDKLTLGSVDPKELIQVTDTLTTEKYILAEVQKAYRMQGVDI 1067 Query: 1249 NDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLG 1308 DKH+EV+ RQML+K +++ G +D L GE ++ + + N+E+ +G + AT +LG Sbjct: 1068 ADKHVEVLTRQMLQKVRVLDPGETDILPGEVMDIGQFRDRNKEVIISGGIPATAQSVILG 1127 Query: 1309 ITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD 1368 ITKA+L T SF+SAASFQETTRVLT+A++ GK D L GLKENVI+G++IPAGTG +++ Sbjct: 1128 ITKAALETNSFLSAASFQETTRVLTDASIRGKNDPLLGLKENVIIGKIIPAGTGMPVYRN 1187 Query: 1369 RM 1370 Sbjct: 1188 ME 1189 >UniRef50_UPI0001C379E7 DNA-directed RNA polymerase subunit beta'''' n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C379E7 Length = 1237 Score = 1148 bits (2969), Expect = 0.0, Method: Composition-based stats. Identities = 558/1277 (43%), Positives = 787/1277 (61%), Gaps = 118/1277 (9%) Query: 13 KTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLC 72 + F++IKI LASP+ IRSWS+G V++PETINYRT KPERDGLFC RIFGP KD+EC C Sbjct: 2 EFTTFESIKIGLASPEQIRSWSYGVVERPETINYRTQKPERDGLFCERIFGPTKDWECHC 61 Query: 73 GKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPL 132 GK+K+++ +G +C++CGVEVT+ +VRRERMGHIELA+P +HIW+ K PSRIG +L++ Sbjct: 62 GKFKKIRFKGKVCDRCGVEVTRARVRRERMGHIELAAPVSHIWYFKGTPSRIGQVLEVSQ 121 Query: 133 RDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSM 192 + +E VLYF Y+V + G T L ++Q+L+E++YL LE++GD+F A+MGAEAI+ LL Sbjct: 122 KRLEEVLYFTKYIVTDPGNTELLKKQLLSEKEYLSYLEKYGDDFKAEMGAEAIRKLLNEY 181 Query: 193 D----------------------------------------------------LEQECEQ 200 D LE + Sbjct: 182 DPARYDTHKQRLIEMGKVSLGGKKITCFNKPTECDCEECRKFAELEGIDWRNNLEIVADD 241 Query: 201 LREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRF 260 L+ EL + K+ KL KR++++EAF SGNKPEWMIL+V+PV+PPD+RP++ LDGGR+ Sbjct: 242 LKAELEGLPAGQKKVKLLKRLQIIEAFRLSGNKPEWMILSVVPVIPPDIRPMIMLDGGRY 301 Query: 261 ATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSN 320 ATSDLNDLYRRVINRNNRLKR+L+L APDIIVRNEKRMLQEAVDAL+DN GR +TG + Sbjct: 302 ATSDLNDLYRRVINRNNRLKRMLELDAPDIIVRNEKRMLQEAVDALIDN---GRPVTGPS 358 Query: 321 KRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPF 380 R LKSL+DM+KGKQGRFRQNLLGKRVDYSGRSVI VGP L+++QCGLPK+MALELFKPF Sbjct: 359 NRALKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKMYQCGLPKEMALELFKPF 418 Query: 381 IYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPV 440 + +L + IK+A+K+++R + VWD L++VI++HPV+LNRAPTLHRLGIQAFEP+ Sbjct: 419 VLKRLVDKKAIANIKSARKLIDRADNKVWDALEDVIKDHPVMLNRAPTLHRLGIQAFEPI 478 Query: 441 LIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPII 500 L+EG+AI+LHPLVC+A+NADFDGDQMAVH+PL+ EAQ EAR LM++ NN+L P++G+P+ Sbjct: 479 LVEGRAIKLHPLVCSAFNADFDGDQMAVHLPLSAEAQAEARFLMLAANNLLKPSDGKPVA 538 Query: 501 VPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDAN 560 VPSQD+VLG YY+T GEG V E Y SLHA +KV+IT KD Sbjct: 539 VPSQDMVLGSYYLTMAKPGEPGEGKVFRDVNEVLMAYNEHDVSLHANIKVKIT---KDIG 595 Query: 561 GELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQAL-----------GKKAISKMLNTCY 609 + V + + D TVGR I +P+ L Y + GKK +S ++ C Sbjct: 596 DKKV--SKIIDATVGRLIFNENIPQNLGYVDRTNSDKQFDLEVAFLVGKKQLSDIIERCI 653 Query: 610 RILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQ 669 +I G T D+I G+ Y+ R+ +V + D IP +K I++EA+AEV +I +++ Sbjct: 654 KIHGTTTTSEVLDRIKALGYKYSTRAALTVAVCDATIPPQKKAILAEADAEVEQITNEYE 713 Query: 670 SGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSG 729 G ++A E+ K+I +W D V+K + +N +N I+MMADSG Sbjct: 714 YGYISAQEKTKKIIALWTNTTDEVTKKLKENFDR---------------YNPIWMMADSG 758 Query: 730 ARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALK 789 ARGS +QIRQLAGMRGL+A G++IE PI AN+REGLN+L+YFI++ GARKGLADTAL+ Sbjct: 759 ARGSISQIRQLAGMRGLIANTSGTVIEIPIRANYREGLNILEYFIASRGARKGLADTALR 818 Query: 790 TANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVL 849 TA+SGYLTRRLVDV+QD+++ E+DCGT +GI + + G +V EP +R++GR AED+ Sbjct: 819 TADSGYLTRRLVDVSQDVIIREEDCGTTDGIEVFEIRNGNEVVEPFDERLVGRFLAEDLR 878 Query: 850 KPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHII 909 T ++++ RN L+ + + + V+ +K+RSV++C GVCA CYG +LA +I+ Sbjct: 879 DEATGELIMSRNKLITDADAKKILDAGVEEIKIRSVLTCRAKTGVCAKCYGANLAFNNIV 938 Query: 910 NKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASR---AAAESSIQVKNKGSIKLSNVKSV 966 + GEA+GVIAAQSIGEPGTQLTMRTFH GG AS + +V+ + ++ Sbjct: 939 SVGEAVGVIAAQSIGEPGTQLTMRTFHTGGVASADAEDITQGLPRVEELFESRRPKGAAI 998 Query: 967 VNS-SGKLVITSRN--TELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPH 1023 ++ SGK+ I T + + ++ E+Y +PY + +GE++ G + + + Sbjct: 999 LSRISGKIHIEEIKTTTNIIVTNDETGESENYMIPYNLKIRVQEGEEIEKGTRLTEGNIY 1058 Query: 1024 TMPVITEVSGFVRFTDMIDGQ---TITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKI 1080 ++ + G + I + Q ++ V++ R Sbjct: 1059 PADIL-NILGTKAVQNYIINEVQKVYRLQGVDINDKHIEVIVRQMLRKVK---------- 1107 Query: 1081 VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPR 1140 V+ G+ L+PGT + ++ +Q +I +G+ ++ Q S + IT Sbjct: 1108 VEESGSSYLLPGTLVDSKKIDEINEELQ----ARIDAGEYDVQLVQISPVLQGITKASSN 1163 Query: 1141 VADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE 1200 A +E + I G + VI ++IP + + Sbjct: 1164 SDSFMSAASFQETTKALTDAAISGKSDRLLGLKENVIIG--------KLIPAGTGMECYR 1215 Query: 1201 GERVERGDVISDGPEAP 1217 V + + ++ AP Sbjct: 1216 NVEVVKNEGYTEHQAAP 1232 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 150/398 (37%), Positives = 207/398 (52%), Gaps = 33/398 (8%) Query: 1002 VLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMID---GQTITRQTDELTGLSS 1058 V +G +V +P ++ G D+ D G+ I + +T + Sbjct: 851 VFEIRNGNEV--------VEPFDERLV----GRFLAEDLRDEATGELIMSRNKLITDADA 898 Query: 1059 LVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI-SS 1117 +LD+ +R L G G ++ + V + I Sbjct: 899 KKILDAGVEEI---KIRSVLTCRAKTGVCAKCYGANLAFNNIVSVGEAVGVIAAQSIGEP 955 Query: 1118 GDTLARIPQESGGT-----KDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGK 1172 G L +GG +DIT GLPRV +LFE+RRPK AIL+ ISG + +E K Sbjct: 956 GTQLTMRTFHTGGVASADAEDITQGLPRVEELFESRRPKGAAILSRISGKIHI-EEIKTT 1014 Query: 1173 RRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRY 1232 +++T + + MIP ++ V EGE +E+G +++G P DIL + G AV Y Sbjct: 1015 TNIIVTNDETGESENYMIPYNLKIRVQEGEEIEKGTRLTEGNIYPADILNILGTKAVQNY 1074 Query: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANREL 1292 I+NEVQ VYRLQGV INDKHIEVIVRQMLRK + +GSS L G V+ ++ N EL Sbjct: 1075 IINEVQKVYRLQGVDINDKHIEVIVRQMLRKVKVEESGSSYLLPGTLVDSKKIDEINEEL 1134 Query: 1293 EANGKVG------ATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRG 1346 +A G S L GITKAS ++SF+SAASFQETT+ LT+AA++GK D L G Sbjct: 1135 QARIDAGEYDVQLVQISPVLQGITKASSNSDSFMSAASFQETTKALTDAAISGKSDRLLG 1194 Query: 1347 LKENVIVGRLIPAGTGYAYHQDRMRRRAAG--EAPAAP 1382 LKENVI+G+LIPAGTG +++ + G E AAP Sbjct: 1195 LKENVIIGKLIPAGTGMECYRNVEVVKNEGYTEHQAAP 1232 >UniRef50_Q3ZX00 DNA-directed RNA polymerase subunit beta' n=5 Tax=Dehalococcoides RepID=RPOC_DEHSC Length = 1295 Score = 1120 bits (2896), Expect = 0.0, Method: Composition-based stats. Identities = 529/1219 (43%), Positives = 741/1219 (60%), Gaps = 133/1219 (10%) Query: 12 TKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECL 71 + +FDAI+I+LASPD IRSWS+GEV KPETINYRT KPERDGLFC RIFGP+KD+EC Sbjct: 2 NEVNDFDAIRISLASPDQIRSWSYGEVTKPETINYRTLKPERDGLFCERIFGPIKDFECA 61 Query: 72 CGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMP 131 CGKYKR++++G+IC+KCGVE+ + KVRRERMGHIELA P HIWF + +PSR+GLLL++ Sbjct: 62 CGKYKRIRYKGIICDKCGVEIARAKVRRERMGHIELACPVGHIWFTRGIPSRVGLLLNLS 121 Query: 132 LRDIERVLYFESYVVI------------------------EGGMTNLERQQILTEEQYLD 167 R +ER++Y+ +++ +G + Q+ E+ ++ Sbjct: 122 TRSLERIIYYSHFIITAVNDDAREKAIKDLEVISSQRVADKGSEVDTRVAQMEAEDATVE 181 Query: 168 ALEEFGDEF-------------------------------------------DAKMGAEA 184 A+ + +F +A MGAEA Sbjct: 182 AINQIRRDFSTEREQMEEDIQLLIDQLKDLQKGNLLTENQYYELKQRFSNVFEASMGAEA 241 Query: 185 IQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPV 244 + LL +D+++E +L +E T S +RKK K+++L+EAF +S NKPEWMI+TVLPV Sbjct: 242 LLKLLSYIDMDKERSKLIQETRST-SGQRRKKAGKQLQLVEAFRRSSNKPEWMIMTVLPV 300 Query: 245 LPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVD 304 LPPDLRP+V LDGGRFATSDLNDLYRRVINRNNRL+ L+++ AP+II+RNEKRMLQEAVD Sbjct: 301 LPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLQHLMEIGAPEIIIRNEKRMLQEAVD 360 Query: 305 ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH 364 +L+DNGRRG+++ + KSL+D+++GKQGRFRQNLLGKRVDYSGRSVI VGP L+L Sbjct: 361 SLIDNGRRGKSVAVNGDHKAKSLSDLLRGKQGRFRQNLLGKRVDYSGRSVIVVGPSLKLS 420 Query: 365 QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLN 424 QCGLP++MALELFKPF+ +L GLA IK+A+++VER V+DIL+EV+++ PVLLN Sbjct: 421 QCGLPRRMALELFKPFVMHRLVRDGLAPNIKSARRLVERARPEVYDILEEVVKDRPVLLN 480 Query: 425 RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 484 RAPTLHRL IQAFEPVLI+G A++LHPLVC+A+NADFDGDQMAVHVPL+ A EAR M Sbjct: 481 RAPTLHRLSIQAFEPVLIDGSALRLHPLVCSAFNADFDGDQMAVHVPLSKAAVKEARETM 540 Query: 485 MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL 544 +S +N++ P++GEP++ PS D+V G YY+T AKGEG + +EA+R Y G+ L Sbjct: 541 LSIHNMMLPSSGEPVVSPSLDMVFGCYYLTTTRPGAKGEGKIFGDFEEAKRYYEMGIIDL 600 Query: 545 HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM 604 A +KVR D G ++ +TT GR I ++PK + + N + K AI K+ Sbjct: 601 RAIIKVR------DGKGNML------ETTTGRIIFNDVLPKAVEFQ--NMDIPKSAIKKI 646 Query: 605 LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEI 664 + CY+IL + + D+I GF +A SG S+ + D+ +P +K ++++ A+ A Sbjct: 647 IGRCYKILSSQDMAVMLDKIKELGFKFATSSGISIAMSDISVPREKTKLVAAADERTAIA 706 Query: 665 QEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 724 + QF GL+T ERYN +I+ W DR++ A+ + S+YM Sbjct: 707 EGQFARGLITEDERYNSIIETWMETTDRITDAIQAGFDKQG---------------SVYM 751 Query: 725 MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA 784 MA+SGA+G+ +QIRQ+AG+RGLM P G II+ PI ++ REGL L+YFISTHGARKGLA Sbjct: 752 MANSGAKGNISQIRQMAGLRGLMTNPSGRIIDFPIKSSLREGLTALEYFISTHGARKGLA 811 Query: 785 DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT 844 DTAL+T+ SGYLTRRL+DV QD+++ ++DCGT G + E G PL DR+LGR T Sbjct: 812 DTALRTSGSGYLTRRLIDVTQDVIILQEDCGTANGTWIIEPKEKGM-LPPLVDRILGRWT 870 Query: 845 AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA 904 A +V+ P T +I+V N + E + E + V VRS ++C++ G+C CYGRDL Sbjct: 871 AHNVVHPQTGEIIVDNNEEIDEIKAKAIGEAGITEVFVRSPLTCESTHGMCRRCYGRDLG 930 Query: 905 RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVK 964 R +++ A+G+IAAQSIGEPGTQLT+RTFH GG +V+ + V+ Sbjct: 931 RVRLVDMNTAVGIIAAQSIGEPGTQLTLRTFHTGGVVGVDITTGLPRVEELFEARPPKVQ 990 Query: 965 SVVNSSGKLVITSRNTELKLIDEFGRT--KESYKVPYGAVLAKGDGEQVAGGETVANWDP 1022 S+++ +V N + I ++ Y++P G + V G +A+ Sbjct: 991 SIISEIDGVVEVIENENGRHIRIASDEVYQDEYELPSGWKTQVQSRQWVDSGMVLAS--- 1047 Query: 1023 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAE--------------RT 1068 E+ G + D + R E+T +L+ + +E + Sbjct: 1048 ------PELEGKSKAVVQSDQNVVARVAGEVTVEGNLITIKYSESEEREYTIPAAMQIKV 1101 Query: 1069 AGGKDLRPALKIVDAQGN---DVLIPGTDMPAQYFLPGKAIVQLEDGVQIS-------SG 1118 G +R ++ D N + I G D +Y + V GV I+ + Sbjct: 1102 KTGDTIRAGQQLTDGSINPQDILSILGRDAVQKYLVEEVQKVYYSQGVHINDKHIEVIAR 1161 Query: 1119 DTLARIPQESGGTKDITGG 1137 L ++ +S G D+ G Sbjct: 1162 QMLIKVRIDSSGDTDLVPG 1180 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 98/409 (23%), Positives = 157/409 (38%), Gaps = 81/409 (19%) Query: 1026 PVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQG 1085 P++ + G +++ QT D + + E +R L G Sbjct: 860 PLVDRILGRWTAHNVVHPQTGEIIVDNNEEIDEIKAKAIGEAGITEVFVRSPLTCESTHG 919 Query: 1086 NDVLIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDTLARIPQESGGTK--DITGGLPRVA 1142 G D+ + V + I G L +GG DIT GLPRV Sbjct: 920 MCRRCYGRDLGRVRLVDMNTAVGIIAAQSIGEPGTQLTLRTFHTGGVVGVDITTGLPRVE 979 Query: 1143 DLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE 1202 +LFEAR PK +I++EI G+V + G+ + + D YE +P + V + Sbjct: 980 ELFEARPPKVQSIISEIDGVVEVIENENGRHIRIASDEVYQDEYE--LPSGWKTQVQSRQ 1037 Query: 1203 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIE------VI 1256 V+ G V++ ++ V + EV ++G I K+ E I Sbjct: 1038 WVDSGMVLASPELEGKSKAVVQSDQNVVARVAGEVT----VEGNLITIKYSESEEREYTI 1093 Query: 1257 VRQMLRKAT----------------------------------IVNAGSSDFLEGEQVEY 1282 M K + + +G + Sbjct: 1094 PAAMQIKVKTGDTIRAGQQLTDGSINPQDILSILGRDAVQKYLVEEVQKVYYSQGVHIND 1153 Query: 1283 SRVKIANRELEANGKVGATYSRDL--------------------------------LGIT 1310 +++ R++ ++ ++ DL +GIT Sbjct: 1154 KHIEVIARQMLIKVRIDSSGDTDLVPGELVDKFRYEDINAKVLAEGGEPATAHTVLMGIT 1213 Query: 1311 KASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPA 1359 +ASL+TES+++AASFQETTRVLT+AA+ G+ D+L GLKENVI+G+LIPA Sbjct: 1214 RASLSTESWLAAASFQETTRVLTDAAIYGRVDKLSGLKENVIIGKLIPA 1262 >UniRef50_B2UUV9 DNA-directed RNA polymerase subunit beta' n=5926 Tax=root RepID=RPOBC_HELPS Length = 2890 Score = 1112 bits (2875), Expect = 0.0, Method: Composition-based stats. Identities = 576/1332 (43%), Positives = 816/1332 (61%), Gaps = 116/1332 (8%) Query: 9 KAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDY 68 K + ++F + ++ LASP+ I SWS+GEVKKPETINYRT KPERDGLFC +IFGP KDY Sbjct: 1388 KEDDRPKDFSSFQLTLASPEKIHSWSYGEVKKPETINYRTLKPERDGLFCMKIFGPTKDY 1447 Query: 69 ECLCGKYKRLKHRGV-ICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLL 127 ECLCGKYK+ + + + CEKCGV +T +KVRR RMGHIELA+P AHIW++ SLPSRIG L Sbjct: 1448 ECLCGKYKKPRFKDIGTCEKCGVAITHSKVRRFRMGHIELATPVAHIWYVNSLPSRIGTL 1507 Query: 128 LDMPLRDIERVLYFESYVVIEGGMTNLE--------RQQILTEEQYLDALEEFGDE-FDA 178 L + ++D+ERVLY+E+Y+V E G + + IL EEQY + + D F A Sbjct: 1508 LGVKMKDLERVLYYEAYIVKEPGEAAYDNEGTKLVMKYDILNEEQYQNISRRYEDRGFVA 1567 Query: 179 KMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMI 238 +MG EAI+ LL+ +DL + L+EE+ +TNS+ K+KKL KR+K++E+F+ SGN+PEWM+ Sbjct: 1568 QMGGEAIKDLLEEIDLITLLQSLKEEVKDTNSDAKKKKLIKRLKVVESFLNSGNRPEWMM 1627 Query: 239 LTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRM 298 LTVLPVLPPDLRPLV LDGG+FA SD+N+LYRRVINRN RLKRL++L AP+IIVRNEKRM Sbjct: 1628 LTVLPVLPPDLRPLVALDGGKFAVSDVNELYRRVINRNQRLKRLMELGAPEIIVRNEKRM 1687 Query: 299 LQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVG 358 LQEAVD L DNGR A+ G+NKRPLKSL+++IKGKQGRFRQNLLGKRVD+SGRSVI VG Sbjct: 1688 LQEAVDVLFDNGRSTNAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSGRSVIVVG 1747 Query: 359 PYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIRE 418 P L++ +CGLPK MALELFKP + KLE RG ATT+K AK+M+E++ VW+ L E+ Sbjct: 1748 PNLKMDECGLPKNMALELFKPHLLSKLEERGYATTLKQAKRMIEQKSNEVWECLQEITEG 1807 Query: 419 HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQL 478 +PVLLNRAPTLH+ IQAF P LI+GKAIQLHPLVC+A+NADFDGDQMAVHVPL+ EA Sbjct: 1808 YPVLLNRAPTLHKQSIQAFHPKLIDGKAIQLHPLVCSAFNADFDGDQMAVHVPLSQEAIA 1867 Query: 479 EARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYR 538 E + LM+S+ NIL PA+G+ +++PSQD+VLGLYY++ + KGE + + E Sbjct: 1868 ECKVLMLSSMNILLPASGKAVVIPSQDMVLGLYYLSLEKSGVKGEHKLFSSVNEIITAID 1927 Query: 539 SGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGK 598 + +HA+++V + + ++ T+ GR I+ I+P +P + N+ + K Sbjct: 1928 TKELDIHAKIRV-------------LDQGNIIATSAGRMIIKSILPDFIPTDLWNRPMKK 1974 Query: 599 KAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAE 658 K I +++ +++ G+ T F D + GF YA ++G S+ ++D++ P+ K +++ +A+ Sbjct: 1975 KDIGVLVDYVHKVGGIGITATFLDNLKTLGFRYATKAGISISMEDIITPKDKQKMVEKAK 2034 Query: 659 AEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVS 718 EV +IQ+Q+ GL+T ERYNK+ID W ND++SK MM + + + Sbjct: 2035 VEVKKIQQQYDQGLLTDQERYNKIIDTWTEVNDKMSKEMMSTIAQD-----------KEG 2083 Query: 719 FNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHG 778 FNSIYMMADSGARGSAAQIRQL+ MRGLM KPDGSIIETPI +NF+EGLNVL+YF STHG Sbjct: 2084 FNSIYMMADSGARGSAAQIRQLSAMRGLMTKPDGSIIETPIISNFKEGLNVLEYFNSTHG 2143 Query: 779 ARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDR 838 ARKGLADTALKTAN+GYLTR+L+DV+Q++ V DDCGTHEGI +T + G ++ EPL +R Sbjct: 2144 ARKGLADTALKTANAGYLTRKLIDVSQNVKVVSDDCGTHEGIEITDIAVGSELIEPLEER 2203 Query: 839 VLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHC 898 + GRV EDV+ P T +IL+ +TL+ E+ + E + ++ +R+ V+C GVCA C Sbjct: 2204 IFGRVLLEDVIDPITNEILLYADTLIDEEGAKKVVEAGIKSITIRTPVTCKAPKGVCAKC 2263 Query: 899 YGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSI 958 YG +L G + GEA+GV+AAQSIGEPGTQLT+RTFH+GG ASR+ E I +G + Sbjct: 2264 YGLNLGEGKMSYPGEAVGVVAAQSIGEPGTQLTLRTFHVGGTASRSQDEREIVASKEGFV 2323 Query: 959 KLSNVKSVVNSSGKLVITSRNT------ELKLIDEFGRTKESYKVPYGAVLAKGDGE--- 1009 + N+++ N GK +I +R E K+ F V V++ +G+ Sbjct: 2324 RFYNLRTYTNKEGKSIIANRRNASILVVEPKIKAPFDGELRIETVYEEVVVSVKNGDQEA 2383 Query: 1010 ----------------------------------QVAGGETVAN-----WD-PHTMPVIT 1029 +V G ++A+ W+ P+ +P + Sbjct: 2384 KFVLRRSDIVKPSELAGVGGKIEGKVYLPYASGHKVHKGGSIADIIQEGWNVPNRIPYAS 2443 Query: 1030 EVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVL 1089 E+ V+ D I ++ G VL++ + + + Sbjct: 2444 EL--LVKDNDPIAQDVYAKEK----GAIKYYVLEANHLERTHGIKKGDIVSEKGLFAVIA 2497 Query: 1090 IPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARI------------PQESGGTKDITGG 1137 A++++ + + ++D ++ + +++ P + D G Sbjct: 2498 DDNGREAARHYIARGSEILIDDNSEVGANSVISKPTTNTFKTIATWDPYNTPIIADFKGK 2557 Query: 1138 LPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLN 1197 + V + ++ + +V G + + + + + Sbjct: 2558 VGFVDIIAGVTVAEKEDENTGTTSLVVNDYIPSGYKPSLFLEGINGEEVRYFLEPKTSIA 2617 Query: 1198 VFEGERVERGDVI-------------SDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQ 1244 + +G VE+ +V+ + G ++ R I++EV + Sbjct: 2618 ISDGVSVEQAEVLAKIPKATVKSRDITGGLPRVSELFEARKPKPKDVAILSEVDGIVSF- 2676 Query: 1245 GVKINDK-HIEV 1255 G I +K HI V Sbjct: 2677 GKPIRNKEHIIV 2688 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 169/448 (37%), Positives = 255/448 (56%), Gaps = 33/448 (7%) Query: 948 SSIQVKNKGSIKL-----SNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAV 1002 + K KG+IK ++++ +++ + + D+ GR + + G+ Sbjct: 2455 QDVYAKEKGAIKYYVLEANHLERTHGIKKGDIVSEKGLFAVIADDNGREAARHYIARGSE 2514 Query: 1003 LAKGDGEQVAGG-----------ETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTD 1051 + D +V +T+A WDP+ P+I + G V F D+I G T+ + D Sbjct: 2515 ILIDDNSEVGANSVISKPTTNTFKTIATWDPYNTPIIADFKGKVGFVDIIAGVTVAEKED 2574 Query: 1052 ELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLED 1111 E TG +SLVV D +P+L + G +V +YFL K + + D Sbjct: 2575 ENTGTTSLVVNDYIP-----SGYKPSLFLEGINGEEV---------RYFLEPKTSIAISD 2620 Query: 1112 GVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPK--EPAILAEISGIVSFGKET 1169 GV + + LA+IP+ + ++DITGGLPRV++LFEAR+PK + AIL+E+ GIVSFGK Sbjct: 2621 GVSVEQAEVLAKIPKATVKSRDITGGLPRVSELFEARKPKPKDVAILSEVDGIVSFGKPI 2680 Query: 1170 KGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAV 1229 + K +++T DG P + + K +Q+ V E V G+ ++DG + HDILR+ G + Sbjct: 2681 RNKEHIIVTSKDGR-PMDYFVDKGKQILVHADEFVHAGEAMTDGVVSSHDILRISGEKEL 2739 Query: 1230 TRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIAN 1289 +YIV+EVQ VYR QGV I DKHIE+IV QMLR+ I+++G S F+EG+ V K N Sbjct: 2740 YKYIVSEVQQVYRRQGVSIADKHIEIIVSQMLRQVRILDSGDSKFIEGDLVSKKLFKEEN 2799 Query: 1290 RELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKE 1349 + A A LLGIT+A++ ++S ISAASFQETT+VLTEA++A K+D L LKE Sbjct: 2800 ARVIALKGEPAIAEPVLLGITRAAIGSDSIISAASFQETTKVLTEASIAMKKDFLEDLKE 2859 Query: 1350 NVIVGRLIPAGTGYAYHQDRMRRRAAGE 1377 NV++GR+IP GTG ++ + R + Sbjct: 2860 NVVLGRMIPVGTGMYKNKKIVLRTLEDD 2887 >UniRef50_C4ZB95 DNA-directed RNA polymerase n=5 Tax=Firmicutes RepID=C4ZB95_EUBR3 Length = 1282 Score = 1111 bits (2873), Expect = 0.0, Method: Composition-based stats. Identities = 530/1142 (46%), Positives = 724/1142 (63%), Gaps = 111/1142 (9%) Query: 12 TKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECL 71 + +FDAI+I LASP+ IR WS GEVKKPETINYRT KPE+DGLFC +IFGP KD+EC Sbjct: 10 NQAMQFDAIQIGLASPEKIREWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTKDWECH 69 Query: 72 CGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMP 131 CGKYK+++++GV+C++CGVE+T++ VRRERMGHIELA+P +HIW+ K +PSR+GL+LD+ Sbjct: 70 CGKYKKIRYKGVVCDRCGVEITKSSVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDLS 129 Query: 132 LRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGD-EFDAKMGAEAIQALLK 190 R +ERVLYF SY+V++ G T L +QIL E +Y +A + +G F MGAE+I+ LL Sbjct: 130 PRVLERVLYFASYIVLDPGETKLAYKQILNESEYQEACDTYGRSAFRVGMGAESIRELLA 189 Query: 191 SMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLR 250 ++DLE++ +L+ EL E + KR ++ KR++++EAF +SGNKPEWMI+TV+PV+PPDLR Sbjct: 190 AIDLEKDSAELKAEL-ENATGQKRARIIKRLEVVEAFRESGNKPEWMIMTVIPVIPPDLR 248 Query: 251 PLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNG 310 P+V LDGGRFATSDLNDLYRR+INRNNRL+RLLDL APDIIVRNEKRMLQEAVDAL+DNG Sbjct: 249 PMVQLDGGRFATSDLNDLYRRIINRNNRLRRLLDLGAPDIIVRNEKRMLQEAVDALIDNG 308 Query: 311 RRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPK 370 RRGR +TG R LKSL+DM+KGK GRFRQNLLGKRVDYSGRSVI V P L+++QCGLPK Sbjct: 309 RRGRPVTGPGNRALKSLSDMLKGKGGRFRQNLLGKRVDYSGRSVICVEPKLKIYQCGLPK 368 Query: 371 KMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLH 430 +MA+ELFKPF+ +L G A IK+AKKMVER + VWD+L++VI+EHPV+LNRAPTLH Sbjct: 369 EMAIELFKPFVMKELAANGTAHNIKSAKKMVERLQPEVWDVLEDVIKEHPVMLNRAPTLH 428 Query: 431 RLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNI 490 RLGIQAFEP+L+EGKAI+LHPLVC A+NADFDGDQMAVH+PLT EAQ E R +++S NN+ Sbjct: 429 RLGIQAFEPILVEGKAIKLHPLVCTAFNADFDGDQMAVHLPLTAEAQAECRFMLLSPNNL 488 Query: 491 LSPANGEPIIVPSQDVVLGLYYMTRDCV-------------------NAKGEGMVLTGPK 531 L P++G + VPSQD++LG+YY+T + N E LT P Sbjct: 489 LKPSDGGLVAVPSQDMILGVYYLTMRKLADYKDDPKMVAQVSSDTVYNDVDELRKLTTPD 548 Query: 532 E------------------------------------------AERLYRSGLASLHARVK 549 E A Y + +LH + Sbjct: 549 ENTGKAELGLYDLIWFEDVTDGNRRVLCRPIDLLGRYYGSVNLAMLAYENKEITLHQNIF 608 Query: 550 VRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSI-----------VNQALGK 598 V T D + +TTVG I +P+ L + V +GK Sbjct: 609 VHRTVKLADGT----EVSGFTETTVGLLIFNENIPQDLGFIDRSKAENALKFEVEFHVGK 664 Query: 599 KAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAE 658 K I ++L G T D + G+ Y+ ++ +V I DM +P +K ++I++A+ Sbjct: 665 KQIKQILEKVINTHGATTTAEVLDNVKAMGYKYSTQAAMTVSISDMTVPPQKPQMIADAQ 724 Query: 659 AEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVS 718 V +I Q++ GL+T ERY +VI+ W +D ++KA++ L Sbjct: 725 DTVDKITRQYKRGLITDEERYKEVIETWKDTDDALTKALLTGLDK--------------- 769 Query: 719 FNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHG 778 +N+I+MMADSGARGS QI+QLAGMRGLMA G IE PI + FREGL+VL+YF+S HG Sbjct: 770 YNNIFMMADSGARGSDKQIKQLAGMRGLMADTTGRTIELPIKSCFREGLDVLEYFMSAHG 829 Query: 779 ARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDC--GTHE---GIMMTPVIEGGDVKE 833 ARKGL+DTAL+TA+SGYLTRRLVDV+Q ++V E DC GT G+++ +EG + E Sbjct: 830 ARKGLSDTALRTADSGYLTRRLVDVSQHMIVRETDCCAGTGREIPGMVVKAFMEGREEIE 889 Query: 834 PLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAV-------KVRSVV 886 L++R+ GR + + +++V N ++ + + VD K+R+V+ Sbjct: 890 SLQERITGRFSCNTICD-KDGNVIVKANHMITPKRAAKVMAEGVDENGNPITQVKIRTVL 948 Query: 887 SCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAA 946 +C + GVCA CYG +LA G + GEAIG+IAAQSIGEPGTQLTMRTFH GG A Sbjct: 949 TCRSHMGVCAKCYGSNLATGQAVQVGEAIGIIAAQSIGEPGTQLTMRTFHTGGVAGGDIT 1008 Query: 947 ESSIQVKNKGSIKLSNVKSVVNSSGKLVI---TSRNTELKLIDEFGRTKESYKVPYGAVL 1003 + +V+ + +++ G T + E+ + + ++Y +PYG+ + Sbjct: 1009 QGLPRVEEIFEARKPKGLAIITEFGGTATIKDTKKKREVIVTNNETGETKAYLIPYGSRI 1068 Query: 1004 AKGDGEQVAGGETV--ANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVV 1061 DG+++ G+ + + +PH + I V + + Q E+ V+ Sbjct: 1069 KVVDGQELEAGDELTEGSVNPHDILKIKGVRAVQDYMLREVQRVYRLQGVEINDKHVEVI 1128 Query: 1062 LD 1063 + Sbjct: 1129 VR 1130 Score = 308 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 133/299 (44%), Positives = 182/299 (60%), Gaps = 4/299 (1%) Query: 1073 DLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDTLARIPQESGGT 1131 +R L G G+++ + + + I G L +GG Sbjct: 943 KIRTVLTCRSHMGVCAKCYGSNLATGQAVQVGEAIGIIAAQSIGEPGTQLTMRTFHTGGV 1002 Query: 1132 --KDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEM 1189 DIT GLPRV ++FEAR+PK AI+ E G + K+TK KR +++T + + + Sbjct: 1003 AGGDITQGLPRVEEIFEARKPKGLAIITEFGGTATI-KDTKKKREVIVTNNETGETKAYL 1061 Query: 1190 IPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKIN 1249 IP ++ V +G+ +E GD +++G PHDIL+++GV AV Y++ EVQ VYRLQGV+IN Sbjct: 1062 IPYGSRIKVVDGQELEAGDELTEGSVNPHDILKIKGVRAVQDYMLREVQRVYRLQGVEIN 1121 Query: 1250 DKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGI 1309 DKH+EVIVRQ L+K + G SD L G V+ N +LE GK A S+ LLGI Sbjct: 1122 DKHVEVIVRQCLQKIRVEEPGDSDLLPGSMVDALDFLELNEKLEEEGKELAVGSQVLLGI 1181 Query: 1310 TKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD 1368 TKASLAT SF+SAASFQETT+VLTEAA+ GK D L G+KENVI+G+LIPAGTG +++ Sbjct: 1182 TKASLATNSFLSAASFQETTKVLTEAAIKGKVDPLIGMKENVIIGKLIPAGTGMKIYRN 1240 >UniRef50_Q8KTP7 DNA-directed RNA polymerase n=1 Tax=Candidatus Tremblaya princeps RepID=Q8KTP7_TREPR Length = 1319 Score = 1092 bits (2824), Expect = 0.0, Method: Composition-based stats. Identities = 543/1381 (39%), Positives = 749/1381 (54%), Gaps = 120/1381 (8%) Query: 17 FDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYK 76 FD +K+ +ASP IRSWS GEV T+N R+ PE GLFC IFGP +EC CG+Y Sbjct: 20 FDRVKVCMASPLQIRSWSHGEVLTAATVNQRSMIPEAHGLFCTEIFGPAMCHECKCGRYA 79 Query: 77 RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIE 136 +H G+ICE CGVE+ + RR RMGHIELASP H WF + +G +L +P ++ Sbjct: 80 GEQHSGIICECCGVEIAPSYARRLRMGHIELASPVMHAWFSRPSSPHVGTILGLPHSEVV 139 Query: 137 RVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQ 196 RV ++ ++ G T L R +T + A A G + ++ LL S+ +E+ Sbjct: 140 RVARLQARLIRPPGAT-LCRDLTMTSMEDSIARTVGMQHGLAYSGCDGLRRLLASISMER 198 Query: 197 ECEQLREELNETN-SETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPL 255 E + ++++R + R+++L + ++ +PEWMILTV+PVLP LRP++ Sbjct: 199 EVHDTTARIASPRVTDSQRGSMICRLRMLSSLLEFDARPEWMILTVIPVLPAGLRPMIRS 258 Query: 256 DGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRA 315 G A+SDLNDLYR VIN NNRL+RL+ L AP IV E +LQ +VD L+D R + Sbjct: 259 AGRDAASSDLNDLYRGVINCNNRLRRLIALRAPQSIVAAEHDLLQRSVDDLMDGTAR-QG 317 Query: 316 ITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALE 375 + RP +SL++ ++GK GRFRQ++LGKRVDYSGRSVI VGP L +HQCG+P MALE Sbjct: 318 NAREHCRP-RSLSEALRGKTGRFRQHMLGKRVDYSGRSVIVVGPDLGMHQCGIPICMALE 376 Query: 376 LFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQ 435 LF+PF+ G L G+A +A+ AV L IR HPVLLNRAPTLHRL +Q Sbjct: 377 LFRPFVAGALIRGGMAAQRASAEVSAGSTAAVA--ALRHAIRHHPVLLNRAPTLHRLSVQ 434 Query: 436 AFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPAN 495 AF P L+EG AI+L+PLVCA +NADFDGDQMAVHVPL++EA EAR L++ NN+L PA+ Sbjct: 435 AFYPTLVEGLAIRLNPLVCAPFNADFDGDQMAVHVPLSVEAATEARMLLLPCNNLLLPAS 494 Query: 496 GEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEY 555 G P P+QD+VLG+YY+T C L A SG + H+R + E Sbjct: 495 GYPASAPTQDMVLGIYYLT--CGPEDDYHGELGRADRAALKMESGWSRSHSRAMGVVRES 552 Query: 556 EKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLK 615 + G + L +TTVGRA+L +P G P+ VN+ + K + +++N + Sbjct: 553 LRH-RGSYSEFSVLHNTTVGRALLSHALPAGTPFHRVNRTISKGVLVEVMNEAAQRCLPL 611 Query: 616 PTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTA 675 A+ +M GF A R+G S+ IDDM P +K I+ A + + SG++T Sbjct: 612 CLKGMAESLMVAGFNAATRAGISLCIDDMCAPVRKVVTIAGAWRISSLLHRSHNSGVLTG 671 Query: 676 GERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAA 735 + +W ++ VS + L + N++++M+ SG+RGS Sbjct: 672 TRLDHATTRLWQETSELVSDMLALELAR-------QGSTTLAATNAVHLMSASGSRGSTE 724 Query: 736 QIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGY 795 Q++QL+GMRGLM +PDG+I+ TP+T++FREGLN ++Y +S HGARKGLADTAL+TA+SGY Sbjct: 725 QVKQLSGMRGLMVRPDGTILGTPVTSSFREGLNAVEYAMSAHGARKGLADTALRTADSGY 784 Query: 796 LTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTAD 855 LTRRLVD + D+++TE DCGT G+ + + +GR TA V + D Sbjct: 785 LTRRLVDASHDVIITELDCGTCAGVTVGRPKLNSTAVDRALAWCIGRYTASSV-QSDAGD 843 Query: 856 ILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAI 915 +L PRNT + + SV + +RS + CD+ GVCA CYG+DL +N G A+ Sbjct: 844 VLYPRNTSITRDVLEDSLLRSVAGLNIRSPLHCDSQNGVCAMCYGQDLCTLSRVNMGAAV 903 Query: 916 GVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVI 975 GV+AAQSIGEPGTQLTMRTFHIGG AS + G ++ S V V Sbjct: 904 GVVAAQSIGEPGTQLTMRTFHIGGIASSR--SHDVMACQPGVVRYSPCTHSVTPHRVRVA 961 Query: 976 TSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFV 1035 +S N +++ D G +ES+ +P+G++L G+ VA GE + +WD T PVI + Sbjct: 962 SSHNGSVQIHDGRGCARESHAIPHGSILHHASGDIVAAGEVLLSWDAVTTPVIAQHDSLA 1021 Query: 1036 RFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDM 1095 T +G + R G V+ Sbjct: 1022 --TKCAEGIRLKRSD----GRCCTVM---------------------------------- 1041 Query: 1096 PAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAI 1155 L A V + + G +A P + G DITGGL R+A LFEAR + Sbjct: 1042 -----LSAGAEVAIGATQYVRRGQVIATEPAHAEGNTDITGGLARIASLFEARHAQ---- 1092 Query: 1156 LAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPE 1215 R+ N + G Sbjct: 1093 --------------------------------------RRHNEHDNSCWLHG-------- 1106 Query: 1216 APHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFL 1275 +LR G A+ + + ++VQ + QGV++N+KH+E+I RQMLR +VN G S F Sbjct: 1107 ----LLRSNGPTALLQRLQDDVQSILEPQGVRVNNKHLEIIARQMLRCVRVVNPGDSAFH 1162 Query: 1276 EGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEA 1335 EGE V S AN L + A Y LLGITK++L+TESFISAASFQ+TT+V+ A Sbjct: 1163 EGEHVARSEAARANAGLRLQNRRTAAYEHTLLGITKSALSTESFISAASFQDTTKVIATA 1222 Query: 1336 AVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQVTAEDASASLAE 1395 A G+RD LRGLKENVIVGR+IPAGTG+ YH R A PA+ E S Sbjct: 1223 AACGRRDFLRGLKENVIVGRMIPAGTGFVYHAHRRLN--ADAEPASKAGEEEVRSQEQEP 1280 Query: 1396 L 1396 Sbjct: 1281 S 1281 >UniRef50_A8R9Q5 DNA-directed RNA polymerase n=3 Tax=Bacteria RepID=A8R9Q5_9FIRM Length = 1286 Score = 1080 bits (2794), Expect = 0.0, Method: Composition-based stats. Identities = 482/1132 (42%), Positives = 685/1132 (60%), Gaps = 94/1132 (8%) Query: 13 KTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLC 72 F +I++ LASP+ I WS GEVKKPETINYR+ KPERDGLFC RIFGP KD+EC C Sbjct: 2 SVNNFASIQVGLASPERIHEWSHGEVKKPETINYRSQKPERDGLFCERIFGPSKDWECYC 61 Query: 73 GKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPL 132 GKYK+++++GV+C++CGVE+T++ VRRERMGHIELA+P AHIW+L+ +PSR+ LLLD+ Sbjct: 62 GKYKKVRYKGVVCDRCGVEITKSSVRRERMGHIELAAPVAHIWYLRGIPSRMALLLDVTP 121 Query: 133 RDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFG-DEFDAKMGAEAIQALLKS 191 + +E V+YF S++V + T LE +Q+L+E +Y + + +G F AK GAEA LL+ Sbjct: 122 KQLEEVIYFVSWIVTDPKDTKLEYKQVLSEREYRENVAIYGPGSFTAKTGAEAALTLLEE 181 Query: 192 MDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRP 251 +DLE E +++ L E KRKKL KR+ +EAF S NKPEWMI+T +PV+PPDLRP Sbjct: 182 VDLEAEFTKIQAALEGAQGE-KRKKLIKRLDTVEAFRHSDNKPEWMIMTAIPVIPPDLRP 240 Query: 252 LVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGR 311 ++ LDGGRFATSDLNDLYRRVI RNNRLK+LL+L P IIV+NEKRMLQEAVDAL+DNGR Sbjct: 241 MLQLDGGRFATSDLNDLYRRVITRNNRLKKLLELGTPAIIVQNEKRMLQEAVDALIDNGR 300 Query: 312 RGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKK 371 R + ITG+ R LKSL+ +KGKQGRFRQNLLGKRVD+SGRSVI VGP L+++QCGLP++ Sbjct: 301 RSKPITGAGGRALKSLSHSLKGKQGRFRQNLLGKRVDFSGRSVIAVGPDLKMYQCGLPRE 360 Query: 372 MALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHR 431 MA++LFKPF+ ++ R +A+ K A+K+++R+++ +WDI++ VI +PVL+NRAPTLHR Sbjct: 361 MAIQLFKPFVINEIVNREIASNPKTAEKLIDRQDSRIWDIVESVIDGYPVLMNRAPTLHR 420 Query: 432 LGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNIL 491 LGIQAF+P L+EG+A++LHPLVC A+NADFDGDQMAVHVPL+ EA+ EA +M+ +NNIL Sbjct: 421 LGIQAFKPKLVEGRAMRLHPLVCTAFNADFDGDQMAVHVPLSEEARAEALVMMLGSNNIL 480 Query: 492 SPANGEPIIVPSQDVVLGLYYMTRDCV-------------------------NAKGEGMV 526 P +G+PI+ P QD+V+G +Y+T + EG V Sbjct: 481 GPKDGKPIVTPGQDMVMGNFYLTMEETAEEFHQEADRYMAVDCPKEAASWNRYGDNEGHV 540 Query: 527 LTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKG 586 E Y + LH+RV + K + E L TTVG+ I + P+ Sbjct: 541 YGSINEVLMAYETNQIHLHSRVAIPARALHKTSFSEAQQNKYLL-TTVGKIIFNNMFPED 599 Query: 587 LPYSI------------------------------VNQALGKKAISKMLNTCYRILGLKP 616 P+ + A KK + K++ ++ + Sbjct: 600 FPFLNEVSNENFSATPDKYFLEMGKDVKEAIRNLPITPAFKKKDLGKIIGEIFKRYSTEK 659 Query: 617 TVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAG 676 T D+I GF Y+ +G +V + D+ + K E + + + E++ G +T Sbjct: 660 TSEILDEIKDMGFRYSTVAGVTVSLADIEVAPHKDEHVEYGKEKAEELKRLRNKGKLTMQ 719 Query: 677 ERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQ 736 E + +WA D +++ ++ +L + N I MMA SGARG+ + Sbjct: 720 EWERHLNKLWADVKDDIAEELLGSLPRK---------------NPINMMARSGARGNTSN 764 Query: 737 IRQLAGMRGLMAKPDG----------SIIETPITANFREGLNVLQYFISTHGARKGLADT 786 QLAGMRGLMAKP SIIE PI + FREGLNV ++FISTHG RKGL DT Sbjct: 765 FTQLAGMRGLMAKPSQSKSAKGEYVPSIIEVPIYSCFREGLNVSEFFISTHGVRKGLTDT 824 Query: 787 ALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEG--GDVKEPLRDRVLGRVT 844 ALKTA SGYLTRRLVDVAQD+++ +DDCGT +G + +++ + E L DR++GR + Sbjct: 825 ALKTAESGYLTRRLVDVAQDVIIKQDDCGTDKGYWVEAIVDRKTNTIIESLYDRLVGRYS 884 Query: 845 AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA 904 ++V+ P T ++++ + + E +E++ ++ + +RS +C + +G+C CYGR++A Sbjct: 885 KQEVVNPKTGELIIESDEFITEAIAKKIEDSGIEGMYIRSAFTCKSIYGICKKCYGRNMA 944 Query: 905 RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAAS---RAAAESSIQVKNKGSIKLS 961 G + GEA+G++AAQSIGEPGTQLTMRTFH GG AS + +V+ + Sbjct: 945 TGKDVEVGEAVGIMAAQSIGEPGTQLTMRTFHTGGVASADGGDITQGLPRVEELFEARCP 1004 Query: 962 NVKSVVNSSGKLVITSRNTEL--KLIDEFGRTKESYKVPYGAVLA--KGDGEQVAGGETV 1017 +V+ + E ++ + +KV + G V G+ + Sbjct: 1005 KGVAVLAQISGEITAIEQVETGYEVTVSNDKESIVHKVTLAQAIRPWMKIGANVEAGDKI 1064 Query: 1018 AN--WDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAER 1067 DP + + V + + Q E++ V++ R Sbjct: 1065 TEGPVDPKELLKVAGVRQVQNYILKEVKKVYQSQGIEISDKHIEVMIRQMLR 1116 Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats. Identities = 125/362 (34%), Positives = 189/362 (52%), Gaps = 20/362 (5%) Query: 1016 TVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKD-- 1073 A D T +I + + ++ + + TG + + K Sbjct: 860 VEAIVDRKTNTIIESL-----YDRLVGRYSKQEVVNPKTGELIIESDEFITEAIAKKIED 914 Query: 1074 -------LRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDTLARIP 1125 +R A G G +M + V + I G L Sbjct: 915 SGIEGMYIRSAFTCKSIYGICKKCYGRNMATGKDVEVGEAVGIMAAQSIGEPGTQLTMRT 974 Query: 1126 QESGGT-----KDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPV 1180 +GG DIT GLPRV +LFEAR PK A+LA+ISG ++ ++ + + ++ Sbjct: 975 FHTGGVASADGGDITQGLPRVEELFEARCPKGVAVLAQISGEITAIEQVETGYEVTVSND 1034 Query: 1181 DGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDV 1240 S ++ + + + + G VE GD I++GP P ++L++ GV V YI+ EV+ V Sbjct: 1035 KESIVHKVTLAQAIRPWMKIGANVEAGDKITEGPVDPKELLKVAGVRQVQNYILKEVKKV 1094 Query: 1241 YRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGA 1300 Y+ QG++I+DKHIEV++RQMLRK ++ + G QV + + NR+ +GK A Sbjct: 1095 YQSQGIEISDKHIEVMIRQMLRKVVVLEGNDTHLNAGVQVSLTEITKINRQALLSGKTPA 1154 Query: 1301 TYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAG 1360 T+ LLGI+KAS+ T+SF+SAASFQETT+VLT+AA+ GK+D L GLKENVI+G++IPAG Sbjct: 1155 TFKPVLLGISKASVETDSFLSAASFQETTKVLTDAAIKGKKDYLIGLKENVIIGKMIPAG 1214 Query: 1361 TG 1362 TG Sbjct: 1215 TG 1216 >UniRef50_A9NEL8 DNA-directed RNA polymerase subunit beta' n=9 Tax=Bacteria RepID=RPOC_ACHLI Length = 1375 Score = 1050 bits (2714), Expect = 0.0, Method: Composition-based stats. Identities = 484/1123 (43%), Positives = 691/1123 (61%), Gaps = 76/1123 (6%) Query: 1 MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60 + +++ ++ ++ F K+ LASPD IR+WS+GEV ETINYRT KPE GLF R Sbjct: 150 VNKIIQPIRKTYGSKAFTHFKVRLASPDEIRNWSYGEVINHETINYRTSKPEPGGLFDER 209 Query: 61 IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120 IFGP +DY+C CGK K+ ++G IC KCG+E+T++KVRRERMGHI L +P H W+LK+ Sbjct: 210 IFGPTRDYQCACGK-KQTVNKGQICPKCGIEITESKVRRERMGHINLEAPVVHTWYLKNS 268 Query: 121 PSRIGLLLDMPLRDIERVLYFESYVVIEGGM-TNLERQQILTEEQYLDALEEFGDEFDAK 179 PSR+ +LL + + +E V+Y SY+V + G T L ++QIL+E+ Y +EE+G F A Sbjct: 269 PSRLAILLGIKAKQLEEVVYHASYIVTDPGQNTPLAKKQILSEQDYSLLVEEYGSRFTAL 328 Query: 180 MGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMIL 239 GAEA++ LL+ +DL++E + LR+ L T+S+ KR ++ KR+ ++EAF QS NKPEWM++ Sbjct: 329 TGAEAVKKLLQDLDLDKEVKNLRKRLK-TSSKQKRDRIIKRLDVVEAFNQSDNKPEWMVM 387 Query: 240 TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRML 299 V+PV+PPDLRP+VPLDGGRFAT+DLNDLYRR++NRNNRLK+ + AP +I +NEKRML Sbjct: 388 DVIPVIPPDLRPMVPLDGGRFATTDLNDLYRRILNRNNRLKKQKEQMAPRLITKNEKRML 447 Query: 300 QEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP 359 QEAVDAL DN +RG+ R LKSL+D+++GKQGRFRQNLLGKRVDYSGRSVI VGP Sbjct: 448 QEAVDALFDNAKRGKKAAVERNRHLKSLSDLLRGKQGRFRQNLLGKRVDYSGRSVIIVGP 507 Query: 360 YLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREH 419 L ++QCG+P++MA+ LFKPFI +L+L A K A ER + W L++V+REH Sbjct: 508 DLEMYQCGIPREMAITLFKPFILRELQLTHGAEK-KNANAKYERRDDDTWRALEKVVREH 566 Query: 420 PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLE 479 PVLLNRAPTLHRLGIQAFE LI+GKAI+LHPLV A+NADFDGDQMAVH+PL+ EAQ E Sbjct: 567 PVLLNRAPTLHRLGIQAFEVKLIDGKAIRLHPLVTPAFNADFDGDQMAVHLPLSPEAQAE 626 Query: 480 ARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-----------------RDCVNAKG 522 AR LM+++NNIL+P +G+P++ PSQD+VLG YY+T + + Sbjct: 627 ARLLMLASNNILNPRDGKPVVTPSQDMVLGNYYLTIEESKDRNFGDDLERTKKHQEKHRH 686 Query: 523 EGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMI 582 EG + E + Y + SLH R+ ++ E KD + K TT+G+ I I Sbjct: 687 EGKFFSSIDEVKIAYENKDISLHTRIIIK-PESVKD-TFTVEQKNMYLVTTLGKIIFNEI 744 Query: 583 VPKGLPYS--------------------IVN-----------QALGKKAISKMLNTCYRI 611 +P+ PY VN + K+ +S ++ +++ Sbjct: 745 LPETFPYVNEPTMSNLSEKTPDIYFIKKGVNPKDALKHIPTPEPFKKRFLSMVIAQVFKL 804 Query: 612 LGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSG 671 + T D++ GF Y+ +G ++ D+ + KK E++ E E+ EI+E F+ G Sbjct: 805 FHISETSRMLDKLKDLGFKYSTVAGITISYADINVYSKKKEMVEATEEEINEIEEWFEDG 864 Query: 672 LVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGAR 731 L+T ER VID W + + +M + N+I+MM+DSGAR Sbjct: 865 LLTDSERRKLVIDKWTNVKNEIQSGIMKEFDKD---------------NNIFMMSDSGAR 909 Query: 732 GSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTA 791 G+ + QL GMRGLM+ P G IE P+ ++FREGL V ++FISTHGARKG DTALKTA Sbjct: 910 GNVSNFTQLVGMRGLMSNPKGETIEVPVQSSFREGLTVSEFFISTHGARKGSTDTALKTA 969 Query: 792 NSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIE-GGDVKEPLRDRVLGRVTAEDVLK 850 SGYLTRRLVDV+QD+++ EDDCG+ G+ + + + G PL DR+ GR A D++ Sbjct: 970 ESGYLTRRLVDVSQDVIIVEDDCGSSHGVYVEAIKDESGKEIVPLYDRIYGRFAAHDIIS 1029 Query: 851 PGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIIN 910 P T ++ V RN L+ E+ + ++ + V++RS+++C + G+CA YG +LA + Sbjct: 1030 PKTGEVFVKRNELITEEIGLAIVKSGMQKVEIRSIMTCTSSHGICAKDYGINLATNQFVE 1089 Query: 911 KGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASR-AAAESSIQVKNKGSIKLSNVKSVVNS 969 GEAIGV+AAQSIGEPGTQLTMRTFH GG A+ + +++ + K+ ++ Sbjct: 1090 VGEAIGVVAAQSIGEPGTQLTMRTFHTGGVAAGADITQGLPRIQELFEARNPKGKATISE 1149 Query: 970 SGKLV--ITSRNTELKL-IDEFGRTKESYKVPYGAVLAKGDGEQVAGGETV--ANWDPHT 1024 V I+ R + + I + T+ Y + G+ V G+ + + +P Sbjct: 1150 VEGKVKDISRRGGSISITITDTQGTEYKYTLDPNIEALVKKGQDVVAGQKLSSGSINPKE 1209 Query: 1025 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAER 1067 + +T+V + + Q E++ V++ R Sbjct: 1210 LLRVTDVKTASNYILEEVQKVYRAQGVEISDKHVEVIIRQMLR 1252 Score = 290 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 128/365 (35%), Positives = 189/365 (51%), Gaps = 13/365 (3%) Query: 1006 GDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMID---GQTITRQTDELTGLSSLVVL 1062 G V + +P+ + G D+I G+ ++ + +T L ++ Sbjct: 995 SHGVYVEAIKD--ESGKEIVPLYDRIYGRFAAHDIISPKTGEVFVKRNELITEEIGLAIV 1052 Query: 1063 DSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDTL 1121 S + ++R + + G G ++ F+ + + I G L Sbjct: 1053 KSGMQKV---EIRSIMTCTSSHGICAKDYGINLATNQFVEVGEAIGVVAAQSIGEPGTQL 1109 Query: 1122 ARIPQESGGTK---DITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVIT 1178 +GG DIT GLPR+ +LFEAR PK A ++E+ G V G + IT Sbjct: 1110 TMRTFHTGGVAAGADITQGLPRIQELFEARNPKGKATISEVEGKVKDISRRGGSISITIT 1169 Query: 1179 PVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQ 1238 G++ + P L V +G+ V G +S G P ++LR+ V + YI+ EVQ Sbjct: 1170 DTQGTEYKYTLDPNIEAL-VKKGQDVVAGQKLSSGSINPKELLRVTDVKTASNYILEEVQ 1228 Query: 1239 DVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKV 1298 VYR QGV+I+DKH+EVI+RQMLR+ ++ G ++ L G +V K N+E+ N Sbjct: 1229 KVYRAQGVEISDKHVEVIIRQMLRRIMVIIEGDTNILPGTEVSIDEFKRENKEVLKNRGR 1288 Query: 1299 GATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIP 1358 A LLGIT+ASL ++SF+SAASFQETTR+LT+AA+ K+DEL GLKENVI+G LIP Sbjct: 1289 LAVGRPILLGITRASLRSDSFLSAASFQETTRILTDAAIRSKKDELHGLKENVIIGGLIP 1348 Query: 1359 AGTGY 1363 AGTG Sbjct: 1349 AGTGI 1353 >UniRef50_C8W807 DNA-directed RNA polymerase n=6 Tax=Actinobacteria (class) RepID=C8W807_ATOPD Length = 1475 Score = 1041 bits (2693), Expect = 0.0, Method: Composition-based stats. Identities = 514/1127 (45%), Positives = 672/1127 (59%), Gaps = 139/1127 (12%) Query: 10 AQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYE 69 A + EFDAIKI+LAS D IR WS+GEVKKPETINYRT KPE+DGLFC +IFGPV+D+E Sbjct: 2 ADFDSTEFDAIKISLASADDIRGWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPVRDWE 61 Query: 70 CLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPS-RIGLLL 128 C CGKYK ++ +G+ CE+CGVEVT KVRR+RMGHIELA+P +HIW+ KS S + LL Sbjct: 62 CACGKYKGIRFKGITCERCGVEVTTAKVRRDRMGHIELAAPVSHIWYFKSPTSFPLARLL 121 Query: 129 DMPLRDIERVLYFESYVVI------EGGMTNLERQQILTEEQYLDAL------------- 169 D+ +D+E+VLYF SYV+ + R+++ + + LDA Sbjct: 122 DIKSKDLEKVLYFASYVITSVDTEAREADVDDLREELAADLEELDAERDDQIARLREQGQ 181 Query: 170 ---EEFGD-----------------------------EFDAKMGAEAIQALLKSMDLEQE 197 +EFGD F+ M E + L+ L E Sbjct: 182 PQDDEFGDFEPLSEDEIRAGVADLEEEYEEEKTLRREAFEKFMQLE-TRELISDEGLFSE 240 Query: 198 --------------CEQLREELNETNSETKRKKL-----------------TKRIKLLEA 226 E +R+ L+ + E + K+L KR+++++A Sbjct: 241 LKRYYGIYFKGGMGAEAVRDLLSNIDLEKEAKELRAIIANEDAQKQKREKAIKRLEIVDA 300 Query: 227 FVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLA 286 F++ GN P MIL V+PV+PPDLRP+V LDGGRFA SDLNDLYRRVINRNNRLKRLLDL Sbjct: 301 FLKGGNDPANMILDVVPVIPPDLRPMVQLDGGRFAASDLNDLYRRVINRNNRLKRLLDLE 360 Query: 287 APDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKR 346 AP IIV NEKRMLQE+VDAL DNGRRGR +TG RPLKSLA+ +KGKQGRFRQNLLGKR Sbjct: 361 APSIIVNNEKRMLQESVDALFDNGRRGRPVTGRGGRPLKSLAEALKGKQGRFRQNLLGKR 420 Query: 347 VDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEA 406 VDYSGRSVI V P+L+LHQCGLP MALELFKPF+ +L IK AK+ ++R Sbjct: 421 VDYSGRSVIVVDPHLKLHQCGLPSAMALELFKPFVMRRLVELRKVENIKGAKRAIDRGTP 480 Query: 407 VVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQM 466 VVWDILDEVI++ VLLNRAPTLHRL IQAFEPVLIEGKAI LHPLVCA +NADFDGDQM Sbjct: 481 VVWDILDEVIQDRLVLLNRAPTLHRLSIQAFEPVLIEGKAIHLHPLVCAPFNADFDGDQM 540 Query: 467 AVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMV 526 +VHVPL+ +AQ EAR LM+S+NN+ SPA+G+ + VPSQD+V G+YY+T + A + + Sbjct: 541 SVHVPLSTQAQTEARILMLSSNNLRSPASGKVLTVPSQDMVFGVYYLTSEKTGADAKTLT 600 Query: 527 LTGPKEAERLYRSGL-ASLHARVKVRITEYE------------------KDANGELVAKT 567 ++A + L A+V VR++ + + + + T Sbjct: 601 FASFEDALLAIEANRDLDLQAKVVVRVSTKDANVADSGRAIFRVMTGRGQYEDLNVTEGT 660 Query: 568 SLKDTTVGRAILW-MIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMY 626 +TTVGR I +P+ P +N + K I ++N C + D I Sbjct: 661 KRFETTVGRIIFNRQCLPEDYP--YINYKMVKSDIGILVNDCCDRYPMADVEPILDNIKK 718 Query: 627 TGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIW 686 TGF YA +G +V + D VIPE K +++ EA+ V +I E ++ G ++ ER+ +V++ W Sbjct: 719 TGFHYATLAGLTVSVWDAVIPEHKPQLLQEAQDRVDQINEYYEDGFLSERERHVEVVNAW 778 Query: 687 AAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGL 746 D + M+ + N IYMMADSGARGS Q+RQLAGMRGL Sbjct: 779 TECTDLLGSEMLAGFAED---------------NPIYMMADSGARGSKTQLRQLAGMRGL 823 Query: 747 MAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQD 806 MA G I+ PI ANFREGL L+YFIST+GARKGL DTA T++SGYLTRRLVDVAQD Sbjct: 824 MADMSGETIDLPIKANFREGLEPLEYFISTYGARKGLVDTASHTSDSGYLTRRLVDVAQD 883 Query: 807 LVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLL-H 865 ++V E+DCGT E + + G + ++GR T EDV P T ++L+P + Sbjct: 884 VIVREEDCGTDEAVTYPLIKPGQTSVD---TDLIGRCTLEDVCDPNTGEVLIPAGGYVES 940 Query: 866 EQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGE 925 +Q + L E+ + V++R++++C + +GVC CYG DL+ +N G A+G+IAAQSIGE Sbjct: 941 KQDLERLVEHGLTKVQLRALLTCKSKYGVCQKCYGWDLSTRRPVNIGTAVGIIAAQSIGE 1000 Query: 926 PGTQLTMRTFHIGGAASR--------AAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITS 977 PGTQLTMRT H GG A A V N L + SG L IT Sbjct: 1001 PGTQLTMRTIHSGGVAGADDITQGLPTVARMFDVVGNVNEKILGREADLAPVSGVLHITP 1060 Query: 978 RNTE--LKLIDEFGRTK--ESYKVPYGAVLA--KGDGEQVAGGETVA 1018 TE L+++D ++ E ++VP DG V G+ + Sbjct: 1061 ETTEYLLRIVDADDASRVIEEWRVPASVRFMPGIEDGVVVRAGDQIT 1107 Score = 236 bits (601), Expect = 7e-60, Method: Composition-based stats. Identities = 150/632 (23%), Positives = 236/632 (37%), Gaps = 62/632 (9%) Query: 795 YLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGR-VTAEDVLKPGT 853 Y+ ++V ++V D C + + P+++ + G V+ D + P Sbjct: 683 YINYKMVKSDIGILV-NDCCDRYPMADVEPILDNIKKTGFHYATLAGLTVSVWDAVIPEH 741 Query: 854 ADILVPRNTL----LHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDL----AR 905 L+ ++E + D V+V + + C G ++ A Sbjct: 742 KPQLLQEAQDRVDQINEYYEDGFLSERERHVEVVNAWT------ECTDLLGSEMLAGFAE 795 Query: 906 GHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKS 965 + I G ++ TQL G A + + +K L ++ Sbjct: 796 DNPIYMMADSGARGSK------TQLRQLAGMRGLMADMSGETIDLPIKANFREGLEPLEY 849 Query: 966 VVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAG---GETVANWDP 1022 +++ G +R L+D T +S + ++ V G A P Sbjct: 850 FISTYG-----ARKG---LVDTASHTSDSGYLTRR-LVDVAQDVIVREEDCGTDEAVTYP 900 Query: 1023 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSL----------VVLDSAERTAGGK 1072 P T V TD+I T+ D TG + + E Sbjct: 901 LIKPGQTSVD-----TDLIGRCTLEDVCDPNTGEVLIPAGGYVESKQDLERLVEHGLTKV 955 Query: 1073 DLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDTLARIPQESGGT 1131 LR L G G D+ + + V + I G L SGG Sbjct: 956 QLRALLTCKSKYGVCQKCYGWDLSTRRPVNIGTAVGIIAAQSIGEPGTQLTMRTIHSGGV 1015 Query: 1132 K---DITGGLPRVADLFEA------RRPKEPAILAEISGIVSFGKETKGKRRLVITPVDG 1182 DIT GLP VA +F+ + A LA +SG++ ET ++ D Sbjct: 1016 AGADDITQGLPTVARMFDVVGNVNEKILGREADLAPVSGVLHITPETTEYLLRIVDADDA 1075 Query: 1183 SDPYEE-MIPKWRQL--NVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQD 1239 S EE +P + + +G V GD I+ G + RL + + V V+D Sbjct: 1076 SRVIEEWRVPASVRFMPGIEDGVVVRAGDQITRGFVNFRMLRRLTDIESTMHTFVESVKD 1135 Query: 1240 VYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVG 1299 VY QGV++NDKHIEVI RQMLR+ + N G S +L G+ V+ + + G Sbjct: 1136 VYTSQGVELNDKHIEVIARQMLRRVQVTNPGDSSYLLGQYVDRYVFAETVQNIALAGGTP 1195 Query: 1300 ATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPA 1359 +LG K + + +S++S+ASF T VLT AA+ G D L LK NVIVG+ IPA Sbjct: 1196 PEAEPAILGTLKVASSIDSWLSSASFIRTAGVLTSAAIEGDVDHLLDLKSNVIVGKQIPA 1255 Query: 1360 GTGYAYHQDRMRRRAAGEAPAAPQVTAEDASA 1391 GTG + + D + A+ Sbjct: 1256 GTGLSAYNDVELTYHGTKIDGPTSSLAKSLPD 1287 >UniRef50_D1C2J9 DNA-directed RNA polymerase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C2J9_SPHTD Length = 1479 Score = 1005 bits (2599), Expect = 0.0, Method: Composition-based stats. Identities = 492/1004 (49%), Positives = 654/1004 (65%), Gaps = 50/1004 (4%) Query: 150 GMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETN 209 +++L+ Q+LTE QY +A+E F A MGAEA+ ++ MDL++ +LR+E++ + Sbjct: 331 AISDLKPLQVLTETQYREAMELAPGVFKAGMGAEAVYEVVSKMDLDKLSAELRQEIH-SV 389 Query: 210 SETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLY 269 S +RKK KR++++EA +SGN+PEWMI TVLPV+PPDLRP+V LDGGRFATSDLNDLY Sbjct: 390 SGQRRKKAAKRLRVVEALRKSGNRPEWMIFTVLPVIPPDLRPMVQLDGGRFATSDLNDLY 449 Query: 270 RRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLAD 329 RRVINRNNRLKRLL+L APDIIVRNEKRMLQEAVDAL+DNGRRGR ++GS K LKSL+D Sbjct: 450 RRVINRNNRLKRLLELGAPDIIVRNEKRMLQEAVDALIDNGRRGRVVSGSGKHKLKSLSD 509 Query: 330 MIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRG 389 M+KGKQGRFRQNLLGKRVDYSGRSVI VGP L+LHQCGLPK+MALELFKPF+ KL +G Sbjct: 510 MLKGKQGRFRQNLLGKRVDYSGRSVIVVGPDLKLHQCGLPKRMALELFKPFVMQKLVAQG 569 Query: 390 LATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQL 449 A IKAAK++VER + VWD+L++VI ++ VLLNRAPTLHRLGIQAFE LIEG AIQL Sbjct: 570 YAHNIKAAKRLVERVDPHVWDVLEQVIADYLVLLNRAPTLHRLGIQAFEVKLIEGSAIQL 629 Query: 450 HPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLG 509 HPLVCAA+NADFDGDQMAVHVPL+ AQ EAR M+ST N+L P++G+P+I P+QD+VLG Sbjct: 630 HPLVCAAFNADFDGDQMAVHVPLSAAAQQEARERMLSTRNLLDPSDGDPVITPTQDIVLG 689 Query: 510 LYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSL 569 YYMT A+GEG V GP E E YR+G+ L A++KVR+ + NG L Sbjct: 690 CYYMTLPRPGARGEGKVFAGPHEVELAYRTGVVDLQAQIKVRL-----ELNGSGPQ---L 741 Query: 570 KDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGF 629 DTTVGR +L ++P L + N+ + +KA+ +++ CYR LG + T AD I GF Sbjct: 742 VDTTVGRVLLNEVIPDELGFW--NETMDRKALRRLVAACYRELGPEVTAEMADNIKTIGF 799 Query: 630 AYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAA 689 YA + G ++G+ D+ IPE K II+ A+A+V E++ Q++ GL+T ER+ +V++IW A Sbjct: 800 NYATKGGLTIGLTDVHIPESKEAIIAAADAKVEEVERQYRRGLITDAERHREVVNIWNDA 859 Query: 690 NDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAK 749 D ++KA+ L N++YMM+ SGA+G+ QI Q+AGMRGLM Sbjct: 860 RDELAKAVEAGLGVN---------------NALYMMSTSGAKGNINQISQMAGMRGLMLD 904 Query: 750 PDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVV 809 P G II+ PI +NFREGL+VL+YFISTHGARKGLADTAL+TA+SGYLTRRLVDVAQD++V Sbjct: 905 PGGKIIDLPIRSNFREGLSVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVAQDVIV 964 Query: 810 TEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWC 869 T DDCGT EG+ + ++ E R++GR+ A+ V+ P T +ILV RN + E Sbjct: 965 TVDDCGTEEGMRIE--VDSMPDTESFIGRIVGRMAAQPVVDPNTGEILVERNGEITEAIA 1022 Query: 870 DLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQ 929 L V V VR+ + C+ + GVC +CYGR+LA G +++ GEA+G+IAAQSIGEPGTQ Sbjct: 1023 RDLVARGVPRVDVRTPMQCEAEHGVCRYCYGRNLASGQLVDLGEAVGIIAAQSIGEPGTQ 1082 Query: 930 LTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLV--ITSRNTELKLIDE 987 LTMRTFH GG A +V+ + K+++ +V + + L+ Sbjct: 1083 LTMRTFHTGGVAGEDITTGLPRVEELFEAREPKGKAILAEHDGVVHIVEDESGRRILLSR 1142 Query: 988 FGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDP---HTMPVITEVSGFVRFTDMIDGQ 1044 + +P G + DGE VA G+ +A+ P PV+ + G V +DGQ Sbjct: 1143 EEIVTDVMALPEGYQVLVADGETVAVGQVLAS-PPEGVEGDPVVASMDGVV----FLDGQ 1197 Query: 1045 TITRQTDELTGLSSLVVLDSAE-RTAGGKDLRPALKIVDAQ---GNDVLIPGTDMPAQYF 1100 + +E T + V SA R G + ++ D + G +Y Sbjct: 1198 EFVLRHEE-TQTTEYQVPASAHIRVNDGDTVTTGTQLTDGNLDPQQILQTMGRAAVQRYL 1256 Query: 1101 LPGKAIVQLEDGV-------QISSGDTLARIPQESGGTKDITGG 1137 + V GV ++ L ++ E G D+ G Sbjct: 1257 VDEVQKVYKSQGVVTNDKHIEVIVRQMLRKVAVEDPGDTDLLVG 1300 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 119/312 (38%), Positives = 162/312 (51%), Gaps = 30/312 (9%) Query: 1078 LKIVDAQGNDVLIPGTDMPAQYF-LPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITG 1136 + D G +L+ ++ LP V + DG ++ G LA P+ G Sbjct: 1128 HIVEDESGRRILLSREEIVTDVMALPEGYQVLVADGETVAVGQVLASPPEGVEGDP---- 1183 Query: 1137 GLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQL 1196 ++A + G+V + + + + E +P + Sbjct: 1184 ------------------VVASMDGVVFLDGQE------FVLRHEETQTTEYQVPASAHI 1219 Query: 1197 NVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVI 1256 V +G+ V G ++DG P IL+ G AV RY+V+EVQ VY+ QGV NDKHIEVI Sbjct: 1220 RVNDGDTVTTGTQLTDGNLDPQQILQTMGRAAVQRYLVDEVQKVYKSQGVVTNDKHIEVI 1279 Query: 1257 VRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLAT 1316 VRQMLRK + + G +D L GE ++ N E+ A G AT + LLGITKASLAT Sbjct: 1280 VRQMLRKVAVEDPGDTDLLVGELIDRFTFNRINEEIIAEGGEPATAQQVLLGITKASLAT 1339 Query: 1317 ESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAG 1376 ESF+SAASFQETTRVLTEAA+ GK D LRGLKENVI+G+LIPAG+G+ + R Sbjct: 1340 ESFLSAASFQETTRVLTEAAIHGKVDYLRGLKENVIIGKLIPAGSGFWA-RKRKAEGLTA 1398 Query: 1377 EAPAAPQVTAED 1388 A+ E+ Sbjct: 1399 HDEASLAAMQEE 1410 Score = 230 bits (586), Expect = 4e-58, Method: Composition-based stats. Identities = 113/237 (47%), Positives = 145/237 (61%), Gaps = 22/237 (9%) Query: 6 KFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPV 65 + +FDAI+I+LASP+ IRSWS GEV KPETINYRT +PE GLFC RIFGP Sbjct: 11 RDSHQGLDVNDFDAIRISLASPEAIRSWSHGEVTKPETINYRTLRPEHGGLFCERIFGPT 70 Query: 66 KDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIG 125 +D+EC CGKYKR++H G IC+KCGVEVT++KVRRERMGHIELA+P AHIW++K PSR+G Sbjct: 71 RDFECYCGKYKRVRHAGTICDKCGVEVTRSKVRRERMGHIELAAPVAHIWYVKGTPSRLG 130 Query: 126 LLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKM----- 180 LLLD+ R++ERVLYF SY+V E E E+ L E E +A+ Sbjct: 131 LLLDISPRNLERVLYFASYLVTEVDEEKREALIREIYEELEAELAELDRELEARTADITS 190 Query: 181 -----------GAE----AIQALLKSMD--LEQECEQLREELNETNSETKRKKLTKR 220 GAE +++ L L+QE +RE L E +++ R Sbjct: 191 AIEAELSHLRAGAESLGQSVEQRLAEQKAELDQEATAVRERLESLLGEAAPEEIVFR 247 >UniRef50_UPI00016BFCAD DNA-directed RNA polymerase, beta'''' subunit n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016BFCAD Length = 1244 Score = 995 bits (2573), Expect = 0.0, Method: Composition-based stats. Identities = 520/1217 (42%), Positives = 725/1217 (59%), Gaps = 93/1217 (7%) Query: 17 FDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYK 76 F+ IKI LASPD IR WS GEVKKPETINYRT +PER+GLFC +IFGP KD+EC CGKYK Sbjct: 9 FENIKIGLASPDKIRQWSRGEVKKPETINYRTQRPEREGLFCEKIFGPSKDWECHCGKYK 68 Query: 77 RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIE 136 R++++GVIC++CGVE+T+ KVRRERMGHIELA+P +HIW+ K +PS++GL+LD+ R +E Sbjct: 69 RIRYKGVICDRCGVEITRAKVRRERMGHIELAAPVSHIWYFKGIPSKMGLILDIAPRILE 128 Query: 137 RVLYFESYVVIE-----GGMTNLERQQILTEEQYLDALEEFGDE---------FDAKMGA 182 ++LYF SY++ + +Q+LTE+++ + + DE F A+MGA Sbjct: 129 KILYFASYIITYVSSEYEKREGISYKQVLTEKEFQEVDRRYNDEARERDGTVAFVAEMGA 188 Query: 183 EAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVL 242 EAI+ LL+ +DLE+E E L+ +L + KR ++ KR++++E+F +G+KPEWMIL V+ Sbjct: 189 EAIKKLLQDIDLEKESETLKTQLVDATG-QKRIRIIKRLEVIESFRLAGSKPEWMILDVI 247 Query: 243 PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEA 302 PVLPPDLRP++ LDGGRFATSDLNDLYRRVINRNNRLKRL+DL AP+IIVRNEKRMLQEA Sbjct: 248 PVLPPDLRPMIQLDGGRFATSDLNDLYRRVINRNNRLKRLVDLGAPNIIVRNEKRMLQEA 307 Query: 303 VDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLR 362 VDAL+DNGRRGR +TG RPLKSL+DM+KGK GRFRQNLLGKRVDYSGRSVI VGPYL+ Sbjct: 308 VDALIDNGRRGRPVTGPGNRPLKSLSDMLKGKSGRFRQNLLGKRVDYSGRSVIVVGPYLK 367 Query: 363 LHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVL 422 ++QCGLPK+MA+ELFKPF+ KL G+A IK AK M+E + +WD+L+EVI+EHPV+ Sbjct: 368 IYQCGLPKEMAIELFKPFVMKKLVSDGIAQNIKNAKNMIESLKTEIWDVLEEVIKEHPVM 427 Query: 423 LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARA 482 LNRAPTLHRLGIQAFEP L+EG+A++LHPLVCAAYNADFDGDQMAVHVPL++EAQ E R Sbjct: 428 LNRAPTLHRLGIQAFEPTLVEGRALKLHPLVCAAYNADFDGDQMAVHVPLSVEAQTECRF 487 Query: 483 LMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLA 542 L+++ NN+L P++G P+ VPSQD+VLG+YY+T D +GEG EA + Sbjct: 488 LLLAPNNLLKPSDGAPVAVPSQDMVLGMYYLTLDRAGEEGEGRYFKDENEAILAXETKEI 547 Query: 543 SLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYS-----------I 591 SLHA++KVR T + NG+ + + DTTVGR +P+ L + Sbjct: 548 SLHAKIKVRRTV---EFNGQSLTGMT--DTTVGRIFFNEAIPQDLGFVKRISPESALKYE 602 Query: 592 VNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKH 651 ++ +GKK + +++ G T I D I GF ++ R +V + DMVIPE+K Sbjct: 603 IDFLVGKKQLGQIIKKSINTHGATKTAILLDSIKDLGFKFSTRGALTVSVSDMVIPERKK 662 Query: 652 EIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDG 711 E ++EAE V ++ F+ GL+T ERYNKVI W AAND++++A++ L Sbjct: 663 EFLAEAEKSVDQVTRLFRRGLMTDEERYNKVIQSWNAANDKITEALLSGL---------- 712 Query: 712 QEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQ 771 +N+I+MMADSGARGS QI+QLAGMRGLMA P G IIE PI ANFREGL VL+ Sbjct: 713 -----GRYNNIFMMADSGARGSNNQIKQLAGMRGLMASPSGRIIELPIKANFREGLTVLE 767 Query: 772 YFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDV 831 YFIS HGARKGLADTALKTA+SGYLTRRLVDV+QD+++ E DC + Sbjct: 768 YFISAHGARKGLADTALKTADSGYLTRRLVDVSQDVIIRELDCNHPIEKTVR-------- 819 Query: 832 KEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTD 891 + D ++G+ A DV+ T +++ ++ + +L+ +++ Sbjct: 820 ITKITDELIGKKLAADVINMTTEEVVAEAGEVITAELFSILKARVPGVKEIKFWQKPKIP 879 Query: 892 -FGVCAHCYGRDLARGHIINK--GEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAES 948 V A G +I G AA+ I P T Sbjct: 880 GMVVSAFKEG-----TEMIEPLXERITGRFAAEDIYNPET--------------GELIIE 920 Query: 949 SIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDG 1008 ++ + + + + ++ ++T + +G S G + G+ Sbjct: 921 EDKMITPHLAEYIDSLGITAVRIRTALSCKSTIGVCVKCYGANMSS-----GNQVRIGES 975 Query: 1009 EQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERT 1068 + +++ + + T +G + D+ G + E L ++ Sbjct: 976 VGIIAAQSIGE-PGTQLTMRTFHTGGIAGDDITQGLPRIEELFEARKPKGLAIITEFAGE 1034 Query: 1069 AGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQES 1128 + + +I + T Y +P + ++++DG I +GD L Sbjct: 1035 VAIIESKKKREI------SITNADTGEMKSYLIPYGSRIKVKDGDYIEAGDELTEGSINP 1088 Query: 1129 GGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEE 1188 I G + KE + + G+ K + R ++ V + + Sbjct: 1089 HDILKIKG-----IRGVQDYMLKEVQRVYRLQGVDINDKHVEVIVRQMMKKVKIEENGDT 1143 Query: 1189 MIPKWRQLNVFEGERVE 1205 + ++V E E++ Sbjct: 1144 TLLPGSLVDVLEYEKIN 1160 Score = 328 bits (841), Expect = 9e-88, Method: Composition-based stats. Identities = 139/346 (40%), Positives = 192/346 (55%), Gaps = 4/346 (1%) Query: 1025 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ 1084 P+ ++G D+ + +T +E ++ + +R AL Sbjct: 894 EPLXERITGRFAAEDIYNPETGELIIEEDKMITPHLAEYIDSLGITAVRIRTALSCKSTI 953 Query: 1085 GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDTLARIPQESGGTK--DITGGLPRV 1141 G V G +M + + V + I G L +GG DIT GLPR+ Sbjct: 954 GVCVKCYGANMSSGNQVRIGESVGIIAAQSIGEPGTQLTMRTFHTGGIAGDDITQGLPRI 1013 Query: 1142 ADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEG 1201 +LFEAR+PK AI+ E +G V+ E+K KR + IT D + +IP ++ V +G Sbjct: 1014 EELFEARKPKGLAIITEFAGEVAII-ESKKKREISITNADTGEMKSYLIPYGSRIKVKDG 1072 Query: 1202 ERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQML 1261 + +E GD +++G PHDIL+++G+ V Y++ EVQ VYRLQGV INDKH+EVIVRQM+ Sbjct: 1073 DYIEAGDELTEGSINPHDILKIKGIRGVQDYMLKEVQRVYRLQGVDINDKHVEVIVRQMM 1132 Query: 1262 RKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFIS 1321 +K I G + L G V+ + N G A LLGITKASLATESF+S Sbjct: 1133 KKVKIEENGDTTLLPGSLVDVLEYEKINEVTIEEGGTPADGKPTLLGITKASLATESFLS 1192 Query: 1322 AASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQ 1367 AASFQETTRVLT+AA+ GK D L GLKENVI+G+LIPAGTG ++ Sbjct: 1193 AASFQETTRVLTDAAIKGKVDPLIGLKENVIIGKLIPAGTGMDRYR 1238 >UniRef50_B9KZZ3 DNA-directed RNA polymerase n=2 Tax=Bacteria RepID=B9KZZ3_THERP Length = 1459 Score = 993 bits (2568), Expect = 0.0, Method: Composition-based stats. Identities = 492/1002 (49%), Positives = 652/1002 (65%), Gaps = 55/1002 (5%) Query: 158 QILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKL 217 Q+LTE+QY D + F+AKMGAEA+ ++ SMDL+Q QLR E+ + ++K++ Sbjct: 336 QVLTEQQYRDLADLAPGVFEAKMGAEAVYEVVSSMDLDQLSAQLRAEMAQATG-QRQKRI 394 Query: 218 TKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNN 277 KR++L+EA +SGN+PEWM+LTVLPV+PPDLRP+V LDGGRFATSDLNDLYRRVINRNN Sbjct: 395 AKRLRLVEALRKSGNRPEWMLLTVLPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNN 454 Query: 278 RLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGR 337 RLKRLL+L APDII+RNEKRMLQEAVDAL+DNGRRGR ++G++K LKSL+DM+KGKQGR Sbjct: 455 RLKRLLELGAPDIIIRNEKRMLQEAVDALIDNGRRGRVVSGTSKHKLKSLSDMLKGKQGR 514 Query: 338 FRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAA 397 FRQNLLGKRVDYSGRSVI VGP L+LHQCGLPK+MALELFKPF+ +L + G A IKAA Sbjct: 515 FRQNLLGKRVDYSGRSVIVVGPDLKLHQCGLPKRMALELFKPFVMQRLVVHGHAHNIKAA 574 Query: 398 KKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAY 457 K++VER + VWD+L+EV + + VLLNRAPTLHRLGIQAFE LIEG AIQLHPLVCAA+ Sbjct: 575 KRLVERMDPRVWDVLEEVTQNYLVLLNRAPTLHRLGIQAFEVKLIEGSAIQLHPLVCAAF 634 Query: 458 NADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDC 517 NADFDGDQMAVHVPL+ AQ EAR M+ST N+L P++GEP+I P+ D+VLG Y MT Sbjct: 635 NADFDGDQMAVHVPLSAAAQREARERMLSTRNLLDPSDGEPVIAPTLDIVLGCYAMTLPD 694 Query: 518 VNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRA 577 NA+G G + +E Y+SG L A ++VR+ E D GE L +TTVGR Sbjct: 695 PNARGAGKIFADRQEVVLAYQSGAVDLQAPIRVRM---EIDGQGEQ-----LVETTVGRV 746 Query: 578 ILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGA 637 + I+PK L + N+ + +KA+ +++ TCY LG + T AD+I GF YA +SG Sbjct: 747 LFNEILPKELGFW--NELMDRKALRRLIATCYTRLGAEETARLADRIKDLGFHYATKSGI 804 Query: 638 SVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAM 697 ++G+ D+ IP +K EII+ AE VAE++ Q++ GL+T ER+ +V+ IW A D +++ + Sbjct: 805 TIGVTDVHIPAEKAEIIARAEQRVAEVERQYRRGLITDAERHREVVSIWNEARDELAQVV 864 Query: 698 MDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIET 757 +L + NS+YMM+ SGA+G+ QI Q+AGMRGLM P G IIE Sbjct: 865 ERSLGEQ---------------NSLYMMSKSGAKGNINQISQMAGMRGLMLDPKGQIIEL 909 Query: 758 PITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTH 817 PI +NFREGL+VL+YFISTHGARKGLADTAL+TA+SGYLTRRLVDVAQD++VT DDCGT Sbjct: 910 PIRSNFREGLSVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVAQDVIVTIDDCGTE 969 Query: 818 EGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLE---- 873 +G+ + +E +E DR+LGRV A D++ P T +LV RN + E + Sbjct: 970 DGMWVR--LEDVPDRETFADRILGRVAARDLIDPATGTVLVRRNEEITESIVADIVASLD 1027 Query: 874 ----ENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQ 929 + + AV +R+ + C D+GVC CYGR+LA I+ GEA+G+IAAQSIGEPGTQ Sbjct: 1028 RSEPAHRITAVMIRTPLYCTADYGVCRLCYGRNLATRQIVELGEAVGIIAAQSIGEPGTQ 1087 Query: 930 LTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRN--TELKLIDE 987 LTMRTFH GG A +V+ + K+V+ +V + ++++ Sbjct: 1088 LTMRTFHTGGVAGEDITTGLPRVEELFEAREPKGKAVLAKIDGVVQVVEDEFGRKVIVED 1147 Query: 988 FGRTKESYKVPYGAVLAKGDGEQVAGGETVAN-WDPHTMPVITEVSGFVRFTD----MID 1042 E+++VP G VL G G+ V G+ +A + P++ + G V F D +I Sbjct: 1148 ARLETETHRVPEGFVLLVGTGDMVTAGQVLARPAEGEGEPIVATMDGEV-FVDGDELIIR 1206 Query: 1043 GQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLP 1102 + R+ LT + L+V + ER G+ L + N + G D +Y L Sbjct: 1207 REEQRREEYPLTATAHLLV-SNGERVKAGQQLTDGNVSPEELLNTL---GRDAVQRYILD 1262 Query: 1103 GKAIVQLEDGVQ-------ISSGDTLARIPQESGGTKDITGG 1137 V GV I L ++ G D+ G Sbjct: 1263 EVQKVYKSQGVITNDRHIEIIIRQMLRKVAVTDPGDTDLLVG 1304 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 126/329 (38%), Positives = 179/329 (54%), Gaps = 41/329 (12%) Query: 1079 KIVDAQGNDVLIPGTDM-PAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGG 1137 + D G V++ + + +P ++ + G +++G LAR Sbjct: 1134 VVEDEFGRKVIVEDARLETETHRVPEGFVLLVGTGDMVTAGQVLAR-------------- 1179 Query: 1138 LPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLN 1197 + I+A + G V + +I + E + L Sbjct: 1180 ---------PAEGEGEPIVATMDGEVFVDGDE------LIIRREEQRREEYPLTATAHLL 1224 Query: 1198 VFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIV 1257 V GERV+ G ++DG +P ++L G AV RYI++EVQ VY+ QGV ND+HIE+I+ Sbjct: 1225 VSNGERVKAGQQLTDGNVSPEELLNTLGRDAVQRYILDEVQKVYKSQGVITNDRHIEIII 1284 Query: 1258 RQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATE 1317 RQMLRK + + G +D L GE ++ +++ N E+ A G V AT + LLGITKASLATE Sbjct: 1285 RQMLRKVAVTDPGDTDLLVGEMLDRAQLLRINEEVIAQGGVPATAQQVLLGITKASLATE 1344 Query: 1318 SFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGE 1377 S++SAASFQETTRVLTEAA+ GK D LRGLKENVI+G+LIPAG+G+ +R +RR A Sbjct: 1345 SWLSAASFQETTRVLTEAAIQGKVDYLRGLKENVIIGKLIPAGSGF---WERKQRREAA- 1400 Query: 1378 APAAPQVTAEDASASLAELLNAGLGGSDN 1406 ++A D A+LA L GLG S Sbjct: 1401 ------LSALD-EATLAGLAAVGLGPSGE 1422 Score = 236 bits (601), Expect = 6e-60, Method: Composition-based stats. Identities = 103/210 (49%), Positives = 135/210 (64%), Gaps = 5/210 (2%) Query: 5 LKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGP 64 + + F+AI+I LASP+ IRSWS+GEV KPETINYRT KPE GLFC RIFGP Sbjct: 7 QRETRKSIDVNHFEAIRIGLASPEAIRSWSYGEVTKPETINYRTLKPEHGGLFCERIFGP 66 Query: 65 VKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRI 124 KD+EC CGKYKR ++ G IC+KCGVEVT++KVRRERMGHIELA+P AHIW++K PSR+ Sbjct: 67 TKDFECYCGKYKRQRYAGTICDKCGVEVTRSKVRRERMGHIELAAPVAHIWYVKGTPSRL 126 Query: 125 GLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEA 184 GLLLD+ R++ERVLYF SY+V + ++ L+E + +AK Sbjct: 127 GLLLDITPRNLERVLYFASYLVTRVDEAKRQELIENIRQELQAELDELDRQLEAK----- 181 Query: 185 IQALLKSMDLEQECEQLREELNETNSETKR 214 + L ++ E + R E E + + Sbjct: 182 RRELEEAQGTELLALRDRREALEREARERV 211 Score = 91.3 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 53/189 (28%), Positives = 83/189 (43%), Gaps = 13/189 (6%) Query: 1033 GFVRFTDMID---GQTITRQTDELTGLSSLVVLDSAERTAGGKDL-----RPALKIVDAQ 1084 G V D+ID G + R+ +E+T ++ S +R+ + R L Sbjct: 991 GRVAARDLIDPATGTVLVRRNEEITESIVADIVASLDRSEPAHRITAVMIRTPLYCTADY 1050 Query: 1085 GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDTLARIPQESGGT--KDITGGLPRV 1141 G L G ++ + + V + I G L +GG +DIT GLPRV Sbjct: 1051 GVCRLCYGRNLATRQIVELGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGEDITTGLPRV 1110 Query: 1142 ADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEG 1201 +LFEAR PK A+LA+I G+V ++ G++ VI + +P+ L V G Sbjct: 1111 EELFEAREPKGKAVLAKIDGVVQVVEDEFGRK--VIVEDARLETETHRVPEGFVLLVGTG 1168 Query: 1202 ERVERGDVI 1210 + V G V+ Sbjct: 1169 DMVTAGQVL 1177 >UniRef50_Q05FH9 DNA-directed RNA polymerase subunit beta' n=17 Tax=Candidatus Carsonella ruddii RepID=RPOC_CARRP Length = 1292 Score = 986 bits (2550), Expect = 0.0, Method: Composition-based stats. Identities = 459/1351 (33%), Positives = 721/1351 (53%), Gaps = 89/1351 (6%) Query: 17 FDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYK 76 F + I +AS I SWSFGEV IN++ KPE +GLFC +IF D+E C K K Sbjct: 6 FKKVSIKMASSSKILSWSFGEVTHSNFINFKNLKPEPNGLFCLKIF---SDFELCCLKKK 62 Query: 77 RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIE 136 H + ++ T ++GHI+L P HIW++KS S I +L++ + +E Sbjct: 63 CFCHND---KFLNLKKAHT---GYKVGHIKLFYPAVHIWYIKSSHSNISNILNLSYKILE 116 Query: 137 RVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQ 196 +++ F+ VVI+ +++ + ++ + + GA+A++ LL +L Sbjct: 117 KIINFKLKVVIKSYDIKIKKFNLFIFDKKIKNI------IFTLSGAKALKKLLSDRELFI 170 Query: 197 ECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLD 256 +C L+ ++ + NS +K + K I + F SGNKP WM+L +PVLPP +RPL+ L Sbjct: 171 DCLILKIKIKKCNSFSKLFSILKHINKILIFYYSGNKPSWMVLKKIPVLPPRMRPLIALS 230 Query: 257 GGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAI 316 +FA+SD+N+LY+ V+ RN +LK++ P ++ NE+ LQE++ AL DN + I Sbjct: 231 EKKFASSDINELYKIVLERNYKLKKMTTYLDPKQLLINERISLQESIYALFDNEKLINPI 290 Query: 317 TGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALEL 376 S+KR LKS + +IKGK GRFRQNLLGKRVD+SGR+VITV P L L++C +P +ALEL Sbjct: 291 LTSSKRVLKSFSSLIKGKYGRFRQNLLGKRVDFSGRTVITVEPNLFLYECKIPIYIALEL 350 Query: 377 FKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQA 436 FKP +Y +L+ + + TTI ++ + + +L ++ + ++LNRAPTLHR+ Q+ Sbjct: 351 FKPILYYELKKKKIITTISFIDDYYKKNKKQIILLLKNKVKSYFIMLNRAPTLHRMNFQS 410 Query: 437 FEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANG 496 F+ +L E K I++HPLVC YNADFDGDQMA+H+PLT A++E+ L++S NNI+SP+NG Sbjct: 411 FKILLTEDKTIKIHPLVCLCYNADFDGDQMAIHLPLTNNAKVESNYLLLSINNIISPSNG 470 Query: 497 EPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYE 556 II+P+QD+++G+YY T + K + + L + + + +K Sbjct: 471 NAIIIPTQDIIMGIYYFT---FDFKNKSISLNDINDIINFFEFNNYNFQINIKFN----- 522 Query: 557 KDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKP 616 +TT+GR I+ + K Y +N KK ++ ++ + L Sbjct: 523 ---------NKKKINTTLGRIIINYLFFKNFDY-FLNIVFKKKILTYLIKYLFDFNQLSK 572 Query: 617 TVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAG 676 +I +++ GF + SG ++ D++ E++ F V Sbjct: 573 IIIILEKLKKIGFLISTYSGITISYFDLI-----------------EVKNTFLINKVVFK 615 Query: 677 ERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQ 736 +YN I + + + + + + N++++M DSG+RGS Q Sbjct: 616 LKYNNNIF-------SIVELLNNFFVKIIIKKIQINKTGLKKTNNLFIMLDSGSRGSMLQ 668 Query: 737 IRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYL 796 I+QL RG +K +G II+ PI N + GLN+ YFIST GARKGL DT+LKTANSGYL Sbjct: 669 IKQLIAFRGFFSKSNGDIIKDPIFDNLKNGLNMKNYFISTFGARKGLTDTSLKTANSGYL 728 Query: 797 TRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADI 856 TR+L+DV+ DLV+ + DC T GI + + L + GR+ V I Sbjct: 729 TRKLIDVSHDLVIYKIDCKTKTGIKI--FLNSYFTLVELYKNLYGRLLLFSV--SLKNKI 784 Query: 857 LVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIG 916 L+ NTL+ + LL + ++ + VRSV+ C ++ GVC CYG DL+ I+ G ++G Sbjct: 785 LLKENTLIDNKVLFLLIKKKINTIFVRSVLFCISNRGVCCFCYGIDLSTNKIVLIGVSVG 844 Query: 917 VIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVIT 976 +I+AQSIGEPGTQLTMRTFH GG AS ++ + N G +K K V+N G+++I Sbjct: 845 IISAQSIGEPGTQLTMRTFHTGGVASYFFYSDNLIISNSGFVKFKKCKCVINKFGEVIIV 904 Query: 977 SRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVR 1036 S E + ++ E YK YG + +G + + N++ + + +E G+V Sbjct: 905 SLYGEFMIFNK--IILEKYKFYYGTKIKFRNGFLIKKNTKLINFNDNNFYIYSENIGYVY 962 Query: 1037 FTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMP 1096 F + + E D+ K+ + + I + Sbjct: 963 FKK--ENNIVKNYCLE----------DNKFYYKTLKNFK------------ITIINKSIK 998 Query: 1097 AQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAIL 1156 YF+P + + I G+ +A++ + I GGLPR+++LFEAR PK A+L Sbjct: 999 KNYFIPKNFNIVVYCYDYIFPGEIIAKLVSVTILKSSIIGGLPRLSELFEARIPKLKALL 1058 Query: 1157 AEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEA 1216 +EI G+ ++ E + R+L + G+ V+ GD++SDG Sbjct: 1059 SEIDGVCKIKFSH--LNYIITIISKFGFYKEYTLSCLRKLYINNGDYVKIGDILSDGKPD 1116 Query: 1217 PHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLE 1276 ++I+ L ++ + Y VNE+ +Y Q + +N KHIE+I++QM +K I+ +G S + Sbjct: 1117 LNEIINLISINYLLSYFVNEINSIYFPQNIYVNCKHIELILKQMTKKVKIIFSGESSCQQ 1176 Query: 1277 GEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAA 1336 G+ + N N + + Y R + GITK SL + SF SAASFQET ++L +A Sbjct: 1177 GDILFLEDAINENFSTLVNSRRLSYYKRIVTGITKTSLESLSFFSAASFQETNKILVNSA 1236 Query: 1337 VAGKRDELRGLKENVIVGRLIPAGTGYAYHQ 1367 + + D L GLKENV+VGRLIPAGTG + Sbjct: 1237 IKNRTDYLLGLKENVLVGRLIPAGTGLIKYF 1267 >UniRef50_Q2ST47 DNA-directed RNA polymerase subunit beta' n=5 Tax=Mollicutes RepID=RPOC_MYCCT Length = 1255 Score = 983 bits (2541), Expect = 0.0, Method: Composition-based stats. Identities = 467/1191 (39%), Positives = 685/1191 (57%), Gaps = 112/1191 (9%) Query: 18 DAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKR 77 AIKI LA+PD IRSWS GEV KPETINY+T K E+DGLF RIFGP K+YEC+CG+YK+ Sbjct: 8 KAIKIELANPDTIRSWSHGEVLKPETINYKTLKAEKDGLFDERIFGPTKNYECVCGRYKK 67 Query: 78 LK--HRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDI 135 ++G CEKCGVE+T++ VRRERMGHIEL P HIW LK P RI +LD+ +++ Sbjct: 68 ANPMNKGKKCEKCGVELTESIVRRERMGHIELEEPVTHIWMLKVAPYRIAAILDLKAKEL 127 Query: 136 ERVLYFESYVVIE-GGMTNLERQQILT----------EEQYLDALEEFGDEFDA------ 178 E V+YF S++V+E G ++ +++L E+ L L+ D Sbjct: 128 EEVVYFVSHIVLEQGNQSHFLEKEVLDLGSSRITKTREKLQLSILDVIDQINDPEHRDTK 187 Query: 179 ---------------------------------KMGAEAIQALLKSMDLEQECEQLREEL 205 +GA A++ LL+ +DL +E E ++ +L Sbjct: 188 KANRLLEELKNTSIPFSIDEATSLISKYTNAKFGIGARAVEYLLEKVDLTKEIEAIKIQL 247 Query: 206 -NETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSD 264 N + +R KL KR++ ++ +S +PEWM++ V+PV+PPD+RP++ LDGGRF TS+ Sbjct: 248 ENSKKTPNERTKLLKRLETFDSLKRSKQRPEWMVMRVIPVIPPDIRPIIQLDGGRFTTSE 307 Query: 265 LNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPL 324 +NDLYRR+I RN RLK++ ++ AP IIV NEKRMLQEAVDAL DN R+ + + G NKRPL Sbjct: 308 INDLYRRIIIRNERLKKVKEMGAPSIIVNNEKRMLQEAVDALFDNERKPKPVQGKNKRPL 367 Query: 325 KSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGK 384 KSL ++KGKQGRFRQNLLGKRVDYS RSVI +GP L+++Q GLP++MA+ LFKPF+ Sbjct: 368 KSLTSVLKGKQGRFRQNLLGKRVDYSARSVIAIGPDLKMYQAGLPREMAITLFKPFVIQW 427 Query: 385 LELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEG 444 L+ A +K A+KM+ + + VW+ L++VI++ PVLLNRAPTLHRLGIQAFEP L++G Sbjct: 428 LQDHEYAENVKIAEKMLLQNDPKVWEALEQVIKDRPVLLNRAPTLHRLGIQAFEPKLVKG 487 Query: 445 KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQ 504 KAI+LHPLV A+NADFDGDQMAVHVP+T EA E+RALM+ ++ IL P +G+ I+ P Q Sbjct: 488 KAIRLHPLVTTAFNADFDGDQMAVHVPITKEAVAESRALMLGSSAILGPKDGKAIVTPGQ 547 Query: 505 DVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITE-YEKDANGEL 563 D++LG YY+T + NAKG+GM+ + EA Y SG L++ + + ++ E+ + + Sbjct: 548 DIILGNYYLTTEEKNAKGQGMIFSSLDEAFMAYNSGQIHLNSLIGIALSALPEEKFSDKN 607 Query: 564 VAKTSLKDTTVGRAILWMIVPKGLPY------------------------------SIVN 593 S TTVG+ I P+ V Sbjct: 608 QRLNSYLLTTVGKLYFNQIFDDNFPWINSNNIWNAKEAVKEFIYDFSQDIDKVIENVQVQ 667 Query: 594 QALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEI 653 Q + KK +S ++ + G + T D++ GF+++ +SG ++ D+V K++ Sbjct: 668 QPIKKKELSLIIERYFETHGARKTAEMLDKMKDLGFSFSTKSGTTISAGDVVAFTHKYDE 727 Query: 654 ISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQE 713 EA+ +V +I + + G++T E+ ++ID+W+ D++ + L+ + Sbjct: 728 FKEADQKVEQITDFYNMGMLTNSEKKRRIIDVWSEVKDKIQNELATVLRKDVK------- 780 Query: 714 EKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYF 773 N I++M DSGARG+ + QL GMRGLM G I E PI ++FREGL V +YF Sbjct: 781 ------NPIFVMVDSGARGNVSNFTQLVGMRGLMNDTKGDIKEIPIKSSFREGLTVSEYF 834 Query: 774 ISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEG--GDV 831 +STHGARKG+AD ALKTA+SGYLTRRLVDV+Q++VV +DC +G ++ +I+ +V Sbjct: 835 VSTHGARKGMADIALKTADSGYLTRRLVDVSQEIVVVNEDCEPTKGFEVSAIIDTKHDNV 894 Query: 832 KEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTD 891 PL+DR++GR T ED+ +++ NTL+ + + + + + +V +RSV++CD Sbjct: 895 IVPLKDRLVGRFTFEDIYD-DDKNLVASANTLIDKNIAEKIIMSGISSVIIRSVLTCDNK 953 Query: 892 FGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASR-AAAESSI 950 GVC CYG +LA ++N GE +GVIAAQSIGEPGTQLTMR FH GG A + Sbjct: 954 RGVCQKCYGLNLATASVVNIGEPVGVIAAQSIGEPGTQLTMRNFHTGGVAGNVDITQGLP 1013 Query: 951 QVKNKGSIKLSNVK-SVVNSSGKLV--ITSRNTELKL-IDEFGRTKESYKVPYGAVLAKG 1006 ++K + ++++ +V I N + I + YK + +VL Sbjct: 1014 RIKELLDVTTPKGAVAIISEVDGVVSEIEDYNGVFVINIVTENEEVKKYKTEFNSVLRVE 1073 Query: 1007 DGEQVAGGETVAN--WDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVL-- 1062 G V G+ + D H + + + + Q E++ +++ Sbjct: 1074 QGSSVMAGQKLTEGAIDLHQLLEFGGIQDVQNYILKEVQKVYRLQGIEISDKYIEIIIKQ 1133 Query: 1063 ---DSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLE 1110 +G DL P I +V+ + L I ++ Sbjct: 1134 MLNKVKITDSGDSDLLPGEIITIQNYKEVVQDCIVKSIRPPLSKAQIFGIK 1184 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 109/353 (30%), Positives = 167/353 (47%), Gaps = 7/353 (1%) Query: 1021 DPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKI 1080 D +P+ + G F D+ D T + + +R L Sbjct: 892 DNVIVPLKDRLVGRFTFEDIYDDDK-NLVASANTLIDKNIAEKIIMSGISSVIIRSVLTC 950 Query: 1081 VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDTLARIPQESGGTK---DITG 1136 + +G G ++ + V + I G L +GG DIT Sbjct: 951 DNKRGVCQKCYGLNLATASVVNIGEPVGVIAAQSIGEPGTQLTMRNFHTGGVAGNVDITQ 1010 Query: 1137 GLPRVADLFEARRPKE-PAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQ 1195 GLPR+ +L + PK AI++E+ G+VS ++ G + I + + + Sbjct: 1011 GLPRIKELLDVTTPKGAVAIISEVDGVVSEIEDYNGVFVINIV-TENEEVKKYKTEFNSV 1069 Query: 1196 LNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEV 1255 L V +G V G +++G H +L G+ V YI+ EVQ VYRLQG++I+DK+IE+ Sbjct: 1070 LRVEQGSSVMAGQKLTEGAIDLHQLLEFGGIQDVQNYILKEVQKVYRLQGIEISDKYIEI 1129 Query: 1256 IVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLA 1315 I++QML K I ++G SD L GE + K ++ + GI KA L Sbjct: 1130 IIKQMLNKVKITDSGDSDLLPGEIITIQNYKEVVQDCIVKSIRPPLSKAQIFGIKKAPLE 1189 Query: 1316 TESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD 1368 + S++S+ASFQ+T RVLT A + GK D+L GLKEN+++G LIPAGTG Q+ Sbjct: 1190 SSSWLSSASFQDTARVLTRAIIKGKEDKLEGLKENIMLGNLIPAGTGLTGTQE 1242 >UniRef50_C9M941 DNA-directed RNA polymerase n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M941_9BACT Length = 1684 Score = 977 bits (2525), Expect = 0.0, Method: Composition-based stats. Identities = 510/1437 (35%), Positives = 754/1437 (52%), Gaps = 181/1437 (12%) Query: 106 ELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQY 165 ++ S T H F P R + V+ Y+VI G + +++ + Sbjct: 278 DVVSATEHDLFCGKYPGRF------TSQKESVVVEDACYLVISSGDSPFAEGEVIVGCEQ 331 Query: 166 LDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLE 225 + +F A GAE ++ +LK +D + ++LREEL+E KR+K+ KR++++E Sbjct: 332 R-ICSRYDKKFKANYGAEGVREILKGIDTDHLAQELREELSEAKG-QKRRKIVKRLQVVE 389 Query: 226 AFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDL 285 F + G +PE M+L VLPV+PPDLRP+V LDGGRFATSDLNDLYRRVINRNNRL RL D Sbjct: 390 EFRRGGCRPESMVLDVLPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLLRLKDT 449 Query: 286 AAPDIIVRNEKRMLQEAVDALLDNGRR---GRAITGSNKRPLKSLADMIKGKQGRFRQNL 342 AP ++ NEKRMLQEAVD+L+DN R+ G+ + G+ RPLKSL D+++GK+GRFRQNL Sbjct: 450 RAPQLMQHNEKRMLQEAVDSLIDNNRQSKNGKVVLGAGNRPLKSLTDLLRGKKGRFRQNL 509 Query: 343 LGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVE 402 LGKRVDYSGRSVI +GP+L+LHQCGLPK+MALELFKPF+ KL RG+AT +K KK++E Sbjct: 510 LGKRVDYSGRSVIAIGPFLKLHQCGLPKRMALELFKPFVVQKLVERGIATNVKNGKKLIE 569 Query: 403 R-EEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADF 461 R + +WDIL+E+I++HPVLLNRAPTLHRLGIQAFEP+L+EG+AI+LHP+ CAA+NADF Sbjct: 570 RAKNDAIWDILEEIIKDHPVLLNRAPTLHRLGIQAFEPILMEGQAIRLHPMACAAFNADF 629 Query: 462 DGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAK 521 DGDQMAVHVPL++EAQ EAR LM+S+NN+LSPA+G+PI+ P+QD++LGLY++T Sbjct: 630 DGDQMAVHVPLSIEAQTEARMLMLSSNNLLSPASGKPIVSPTQDILLGLYHITNMIEGKP 689 Query: 522 GEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDA----NGELVAKTSLKDTTVGRA 577 G+ + +++R+ +R E + L TT GR Sbjct: 690 GQDHYFRDMDSVMAALDHEIVHVNSRIYLRWDESWHLLLSGGDKFLDDGRKWLITTPGRI 749 Query: 578 ILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGA 637 + ++PK L VN +GKK +S++L+ + ++G V D I G+ +A SG Sbjct: 750 LFNQLLPKALR--FVNIQMGKKDLSRLLDIAFDLVGHNDLVNMLDSIKNLGYHWAGVSGI 807 Query: 638 SVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAM 697 S + +VIP++K +++ E++ +EI+E++ G++T E ++ +W+ A ++ A+ Sbjct: 808 SFQMQAIVIPKEKAKVVDESQKVDSEIREEYDMGILTEDEYLDQKEKLWSGAAKKIGDAI 867 Query: 698 MDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIET 757 ++ + N I MM DSGARGS AQ+ Q+AG+RG+MA P G II+ Sbjct: 868 LEQMDRN---------------NPIRMMIDSGARGSRAQLAQMAGIRGVMADPTGRIIDY 912 Query: 758 PITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTH 817 PIT NFREG+N+L+YFISTHGARKGLADTAL+TA SGYLTRRLVDVAQD++V E+DC T+ Sbjct: 913 PITTNFREGMNMLEYFISTHGARKGLADTALRTAKSGYLTRRLVDVAQDIIVLEEDCHTN 972 Query: 818 EGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSV 877 +G+ + P+I+ G + PL DRV GR + EDV +V +N L+ L++ Sbjct: 973 KGVKIEPLIKDGKIVIPLSDRVTGRTSLEDVDDENGR--VVTKNELITRAQAKRLDDMGR 1030 Query: 878 DAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHI 937 D + VRS ++C++ G+C CYG DL+ + GEA+G++AAQSIGEPGTQLTMRTFH Sbjct: 1031 DHLWVRSPMTCESPNGICRKCYGVDLSARRTVGIGEAVGIVAAQSIGEPGTQLTMRTFHT 1090 Query: 938 GGA-ASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSR--NTELKLIDE------F 988 GG + +++ + +V+ +V+ R + K+I E Sbjct: 1091 GGVRTGEDITQGLPRIEQLFEARRPKKVAVLAGLNGVVLEIRELGGKRKVIIEGTAPGSD 1150 Query: 989 GRTKESYKVPYGAVLAKGDG------------------------------------EQVA 1012 +E+Y VP L +G ++V Sbjct: 1151 VVRRETYTVPGAQALRVTEGQTVTAQTELTDGYIDPQQLLEVMGLEAVQKYLVDSIQEVY 1210 Query: 1013 GGE-----------TVANWDPHTMPVITE------VSGFVRF----TDMIDGQTITRQTD 1051 + + P IT+ V+G + I+ + + + Sbjct: 1211 ESQGVSINNKHIEVILRKVAPINRVKITDEGDTSFVAGEFAWTSDVEKEIEEIKASNEKN 1270 Query: 1052 ELTGLSSLVVLDSAERTAGGKDLRPALK----IVDAQGNDVLIPGTDMPAQYFLPGKAIV 1107 + SL ++R K L P + + VL PG + YF + + Sbjct: 1271 LTEAVESLKGKKLSDRGGALKGLLPDGAFDKPVTEDVLRKVLAPGGAVTELYFTDEEGPL 1330 Query: 1108 QLEDGVQISSGDTLARIPQESGGTKD----------------ITGGLPRVADLFEA---- 1147 ++ G + E+ D IT G P V +F + Sbjct: 1331 RVVVGEAAFRKEMRGMELVEAVTKGDKVVPADEPLTVAQLSVITQGAP-VPHMFRSVEKL 1389 Query: 1148 RRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERG 1207 R+ ++ +AE V K ++T P + + + Sbjct: 1390 RKQQDEGYVAEA---VIAESGVLAKADQLLTEDLIEQIRRSSAPSVKIWKTV--DTISVR 1444 Query: 1208 DVISDGPEAPHDILRLR------------GVHAVTRYIVNEVQDVYRLQGVKIND----- 1250 D++ + +L+ VH V +V + + ++QG+ D Sbjct: 1445 DLLQERLINRIWGRQLKLAIGADGQALSGSVHMVDGSVVKGIVEG-QIQGLVFADDSNTS 1503 Query: 1251 ---KHIEVIVRQMLRKATIVN----AGSSDFLEGEQVEYSRVKIANRE------------ 1291 + E + + K + + G+ G+++ ++ Sbjct: 1504 RETELTEALSSVVSGKVLLEDVKNSDGTVALQAGQEIGKKQLAKIVAADPTILTVRPVLD 1563 Query: 1292 ------------LEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAG 1339 ++G + + G+TKA+LAT+SF+SAASFQ+T ++L AAV Sbjct: 1564 QTETVQLISRVSFVRRLRLGPQWRPFIHGVTKAALATDSFLSAASFQQTAQILAGAAVRN 1623 Query: 1340 KRDELRGLKENVIVGRLIPAGTGYAYHQD-RMRRRAAGEAPAAPQVTAEDASASLAE 1395 + D L GLKENVI+G LIPAGTG Q + RR + P A TA A S E Sbjct: 1624 QVDHLMGLKENVIIGHLIPAGTGIERFQSVSVERRKGSDEPVAVGETACAAEDSCGE 1680 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 95/194 (48%), Positives = 120/194 (61%), Gaps = 16/194 (8%) Query: 15 EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74 E +++ L D IR S+GEVKKPETINYRT KPERDGLFC RIFGP K YEC CGK Sbjct: 4 REIVGVRVKLGDADEIRKLSYGEVKKPETINYRTLKPERDGLFCERIFGPTKSYECACGK 63 Query: 75 YKRL--KHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPL 132 YK+ K +GV+C+ CGVEVT VRRERMGHIELA+P H+W+L+ PSR+ LLL P Sbjct: 64 YKKSGPKFQGVVCDHCGVEVTDKSVRRERMGHIELAAPVVHLWYLRGTPSRLSLLLGTPT 123 Query: 133 RDIERVLYFES--------YVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEA 184 +D+E+V+YF + VVIEG + + + E L + +F AE Sbjct: 124 KDLEKVIYFAANRRREEAYLVVIEGKYPEVAPKGRVISESERRCLSHYDRKFR----AEV 179 Query: 185 IQALL--KSMDLEQ 196 LL +DLE+ Sbjct: 180 AYRLLTVDDIDLEE 193 >UniRef50_A5USR6 DNA-directed RNA polymerase subunit beta' n=5 Tax=Chloroflexaceae RepID=RPOC_ROSS1 Length = 1504 Score = 951 bits (2457), Expect = 0.0, Method: Composition-based stats. Identities = 475/1065 (44%), Positives = 652/1065 (61%), Gaps = 94/1065 (8%) Query: 157 QQILTEEQYLDALEEFGDEFDAKMGAEAIQALL-KSMDLEQECEQLREELNETNSETKRK 215 ++IL+E++Y E F A MGA A++ ++ +++DL++ E+L+ E+ T +RK Sbjct: 323 KRILSEQEYRALREIAPGVFRADMGAGAVRDMIVRTIDLDKLAEELQNEVYTTQG-QRRK 381 Query: 216 KLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINR 275 K TKR++++EAF +SGN+PEWMILTVLPV+PPDLRP+V LDGGRFATSDLNDLYRRVINR Sbjct: 382 KATKRLRVVEAFRKSGNRPEWMILTVLPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINR 441 Query: 276 NNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQ 335 NNRLKRL++L AP+IIVRNEKRMLQEAVDAL+DNGRRGRA++G K LKSL+DM+KGKQ Sbjct: 442 NNRLKRLMELNAPEIIVRNEKRMLQEAVDALIDNGRRGRAVSGKGKHRLKSLSDMLKGKQ 501 Query: 336 GRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIK 395 GRFRQNLLGKRVDYSGRSVI VGP L+LHQCGLPKKMALELFKPF+ +L +G A IK Sbjct: 502 GRFRQNLLGKRVDYSGRSVIVVGPDLKLHQCGLPKKMALELFKPFVMRRLVEKGFAHNIK 561 Query: 396 AAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCA 455 +AK++VER VWD+L+EVI+++ VLLNRAP+LHRL IQAFE LIEG AIQLHPLVCA Sbjct: 562 SAKRIVERVRPEVWDVLEEVIKDYLVLLNRAPSLHRLSIQAFEAKLIEGSAIQLHPLVCA 621 Query: 456 AYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTR 515 A+NADFDGDQMAVHVPL+ +AQ EAR M+S N+LSPA G+PII PSQD+VLG YY+T Sbjct: 622 AFNADFDGDQMAVHVPLSRKAQEEARMRMLSKYNLLSPATGDPIITPSQDIVLGCYYLTM 681 Query: 516 DCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRIT------------EYEKDANGEL 563 AKG G + EA Y GL + A + VR+T D NG Sbjct: 682 VKDGAKGSGKMFASIDEALLAYDKGLIDIQAPIFVRMTGTVYGESDRPVRMLSPDENG-- 739 Query: 564 VAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRIL----------- 612 A L +TT+GR I + + L + N+ + KK + +++ CY+ Sbjct: 740 -APRMLLETTIGRIIFNNELLEPLRFR--NRLIAKKGLREIIADCYKYYTNLNNLTEADL 796 Query: 613 -------------------GLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEI 653 G + T AD+I GF YA R G ++G+DD+ IP KK +I Sbjct: 797 DTIRAMYGDRPRDDLARYFGSEMTASQADRIKTLGFRYATRGGMTIGVDDIEIPPKKQDI 856 Query: 654 ISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQE 713 ++EAE V E++ QF+ GL+T ERY ++++IW A + ++A+ +L Sbjct: 857 LAEAEKRVTEVERQFRRGLITEEERYREIVEIWQNATKQTTEAVKQHLN----------- 905 Query: 714 EKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYF 773 F + MM +S ARG+ Q+ Q+AGMRGLM+ P G IIE PI +NFREGL+VL+YF Sbjct: 906 ----PFGPVAMMVNSAARGNINQLSQMAGMRGLMSDPTGRIIELPIKSNFREGLSVLEYF 961 Query: 774 ISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKE 833 +STHG RKGLADTAL+TA++GYLTRRL+DVAQD +VT DDCGT EG+ + + +V + Sbjct: 962 VSTHGGRKGLADTALRTADAGYLTRRLIDVAQDNIVTIDDCGTDEGLWIYR-ADDREVLQ 1020 Query: 834 PLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFG 893 R+LGR+ A ++ P T +IL RN + E +E ++DAV VRS ++C D+G Sbjct: 1021 DFEQRILGRLLAAPLVDPRTGEILANRNDEIDEALVRKCKELAIDAVYVRSPLACKADYG 1080 Query: 894 VCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASR-AAAESSIQV 952 +C CYGR+LA G +++ GEA+G+IAAQSIGEPGTQLT+RTFH GG AS + +V Sbjct: 1081 ICRMCYGRNLATGKLVDIGEAVGIIAAQSIGEPGTQLTLRTFHTGGVASADDITQGLPRV 1140 Query: 953 KNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTK--ESYKVPYGAVLAKGDGEQ 1010 + + K+++ +V R E++ I + +++P DG Q Sbjct: 1141 QEIFEARTPKGKAILAEIDGIVELVREDEVRKIRVVATELYTDDHELPPHYEPVVADGAQ 1200 Query: 1011 VAGGETVAN---WDPHTMPVITEVSGFVR-----FTDMIDGQTITRQTDELTGLSSLVVL 1062 V G+ +A D + P++ ++G VR + + + + + T + + Sbjct: 1201 VNEGDVLAQSNRADLNGEPIVARIAGVVRIGAGQISVINEEREVREVVAPHTARLAPGI- 1259 Query: 1063 DSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSG---- 1118 ++ R G+ L + + G + +Y + V GV I+ Sbjct: 1260 ENGARVVAGQHLTEG---SADPQELLALQGREAVQRYLVNEAQKVYRSQGVDINDKHIEV 1316 Query: 1119 ---DTLARIPQESGGTKDITGGLPRVADLFEARRP--KEPAILAE 1158 L R+ E G D G +L ++ K I+++ Sbjct: 1317 IVRQMLRRVRIEEPGDTDYLPG-----ELIDSTEFVRKNAEIISQ 1356 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 127/318 (39%), Positives = 171/318 (53%), Gaps = 38/318 (11%) Query: 1101 LPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEIS 1160 LP + DG Q++ GD LA+ D+ G I+A I+ Sbjct: 1187 LPPHYEPVVADGAQVNEGDVLAQ-----SNRADLNG----------------EPIVARIA 1225 Query: 1161 GIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQL--NVFEGERVERGDVISDGPEAPH 1218 G+V G + + + E + P +L + G RV G +++G P Sbjct: 1226 GVVRIGAGQ------ISVINEEREVREVVAPHTARLAPGIENGARVVAGQHLTEGSADPQ 1279 Query: 1219 DILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGE 1278 ++L L+G AV RY+VNE Q VYR QGV INDKHIEVIVRQMLR+ I G +D+L GE Sbjct: 1280 ELLALQGREAVQRYLVNEAQKVYRSQGVDINDKHIEVIVRQMLRRVRIEEPGDTDYLPGE 1339 Query: 1279 QVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVA 1338 ++ + N E+ + G AT S LLGITKASL T+SF++AASFQETTRVLTEAA+ Sbjct: 1340 LIDSTEFVRKNAEIISQGGEPATASTMLLGITKASLTTDSFLAAASFQETTRVLTEAAIT 1399 Query: 1339 GKRDELRGLKENVIVGRLIPAGTGYAYHQ---DRMRRRAAGEAPAAPQVTAE------DA 1389 GK D LRGLKENV++G+LIPAGTG + + + A APA E +A Sbjct: 1400 GKVDYLRGLKENVVIGKLIPAGTGIEKRRQLAEEIIGELANVAPATSTAVVEQERPDREA 1459 Query: 1390 SASLAELLNAGLGGSDNE 1407 +L L A +GG ++ Sbjct: 1460 DEALRRRLRALIGGDGDD 1477 Score = 229 bits (584), Expect = 7e-58, Method: Composition-based stats. Identities = 104/212 (49%), Positives = 143/212 (67%), Gaps = 11/212 (5%) Query: 13 KTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLC 72 + +F AI+I+LASP+ I SWS GEV KPETINYRT KPERDGLFC RIFGP KD+EC C Sbjct: 3 EINDFSAIRISLASPEDILSWSHGEVTKPETINYRTLKPERDGLFCERIFGPTKDWECYC 62 Query: 73 GKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPL 132 GKYKR++++GV+C+KCGVEVT++KVRRERMGHI LASP +HIWF+K PSR+GLLLD+ Sbjct: 63 GKYKRVRYKGVVCDKCGVEVTRSKVRRERMGHISLASPVSHIWFVKGTPSRLGLLLDISP 122 Query: 133 RDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQ------ 186 R++ERVLYF SY+++ + + + +Y + E E ++K + Q Sbjct: 123 RNLERVLYFASYMIVHVDEELKAQAREALQAEYREKRERIQQEAESKQIELSTQLTQDLG 182 Query: 187 -----ALLKSMDLEQECEQLREELNETNSETK 213 + +E+E +LR+E++ + Sbjct: 183 GMESAQITTQRRIEEEYRRLRDEISAEAERLR 214 >UniRef50_C5SEJ2 DNA-directed RNA polymerase n=6 Tax=Proteobacteria RepID=C5SEJ2_CHRVI Length = 1506 Score = 941 bits (2432), Expect = 0.0, Method: Composition-based stats. Identities = 541/725 (74%), Positives = 619/725 (85%), Gaps = 8/725 (1%) Query: 1 MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60 MKDLLK +K Q + EFDAIKI LASP+MIRSWS+GEVKKPETINYRTFKPERDGLFCA+ Sbjct: 1 MKDLLKIIKQQGQALEFDAIKIGLASPEMIRSWSYGEVKKPETINYRTFKPERDGLFCAK 60 Query: 61 IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120 IFGP+ DYEC+CGKYKRLKHRGV+CEKCGVEVT KVRRERMGHI+LASP AHIWFLKSL Sbjct: 61 IFGPITDYECICGKYKRLKHRGVVCEKCGVEVTLAKVRRERMGHIDLASPVAHIWFLKSL 120 Query: 121 PSRIGLLLDMPLRDIERVLYFESYVVIEGGMT-NLERQQILTEEQYLDALEEFGDEFDAK 179 PSRIGLLLDM LRDIER+LYFES+VVI+ GM +LER Q+L +EQYLD LE GDEFDA+ Sbjct: 121 PSRIGLLLDMTLRDIERILYFESFVVIDPGMIVDLERGQLLNDEQYLDVLEANGDEFDAR 180 Query: 180 MGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMIL 239 MGAEAI LL+S+D+ E ++REE+ TNSETK KKL KR+KL+E+ + SGN+PEWMIL Sbjct: 181 MGAEAIYELLRSIDMAAEIRRMREEIESTNSETKIKKLAKRLKLMESLLASGNRPEWMIL 240 Query: 240 TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRML 299 TVLPVLPP+LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDL APDIIVRNEKRML Sbjct: 241 TVLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLIAPDIIVRNEKRML 300 Query: 300 QEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP 359 QE+VDALLDNGRRGRAITG+NKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVI VGP Sbjct: 301 QESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGP 360 Query: 360 YLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREH 419 L+LHQCGLPK+MALELFKPFI+ KL+ RGLA TIKAAKKMVER VWDIL+EVIREH Sbjct: 361 TLKLHQCGLPKRMALELFKPFIFSKLQFRGLAATIKAAKKMVERGTPEVWDILEEVIREH 420 Query: 420 PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLE 479 PV+LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVC A+NADFDGDQMAVHVPL+LEAQLE Sbjct: 421 PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE 480 Query: 480 ARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRS 539 ARALMM++NNILSPANGEPIIVPSQDVVLGLYYMTR+ + AKGEG + + EA R Y + Sbjct: 481 ARALMMASNNILSPANGEPIIVPSQDVVLGLYYMTRERIGAKGEGALFSNIDEARRAYET 540 Query: 540 GLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKK 599 G A LHAR VR+ E K +G L +TSLK+TTVGRA+++ IVP+GLP+ +V++ LGKK Sbjct: 541 GHADLHARCTVRLREVIKHKDGSLTERTSLKETTVGRAMVFAIVPEGLPFELVDRPLGKK 600 Query: 600 AISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPE-------KKHE 652 IS ++NTCYR LGLK TV+FADQ+MY GF A R+G S+G+DDM +P K Sbjct: 601 QISMLINTCYRRLGLKDTVVFADQVMYLGFRMATRAGVSIGLDDMEVPRDDQDAKMDKGA 660 Query: 653 IISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQ 712 +++ AE EV EIQ+Q+ SGLVT GERYNKV+DIW+ ND+V+KAMM L T+ G Sbjct: 661 LLAAAELEVQEIQQQYASGLVTNGERYNKVVDIWSRTNDQVAKAMMSKLGTDLAKTDPGF 720 Query: 713 EEKQV 717 E +++ Sbjct: 721 EAERL 725 Score = 845 bits (2183), Expect = 0.0, Method: Composition-based stats. Identities = 461/687 (67%), Positives = 542/687 (78%), Gaps = 5/687 (0%) Query: 709 RDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLN 768 R +E KQ SFNSIYMMA+SGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLN Sbjct: 816 RLIEERKQDSFNSIYMMANSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLN 875 Query: 769 VLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEG 828 V+QYFISTHGARKGLADTALKTANSGYLTRRLVDVAQD+VV E+DCGT +G++M PVIEG Sbjct: 876 VIQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDMVVLEEDCGTDQGLLMAPVIEG 935 Query: 829 GDVKEPLRDRVLGRVTAEDVLKPG--TADILVPRNTLLHEQWCDLLEENSVDAVKVRSVV 886 GDV EPLRDR+LGRVTA DV +PG +++ TLL E W + E+ +D V+VRS + Sbjct: 936 GDVVEPLRDRILGRVTAVDVYRPGVDNPELICKAGTLLDEGWVERFEDVGIDQVRVRSPI 995 Query: 887 SCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAA 946 +C++ GVCA CYGRDLARGH +N GEA+GVIAAQSIGEPGTQLTMRTFHIGGAASRAAA Sbjct: 996 TCESRLGVCAQCYGRDLARGHRVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAA 1055 Query: 947 ESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKG 1006 SSI++KN GS +L N+K+V + SG LV SR+ EL ++DE G KE YKVPYGA L G Sbjct: 1056 VSSIEIKNGGSARLHNIKTVQHHSGNLVAVSRSGELTVVDERGMEKERYKVPYGATLRVG 1115 Query: 1007 DGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAE 1066 DG+ V G+ VA WDPHT PV+TEV+G + F D I+G T+ QTD++TGLSSLVV+D + Sbjct: 1116 DGDAVKPGDVVATWDPHTHPVVTEVAGRLEFEDFIEGVTVQAQTDDVTGLSSLVVIDPKQ 1175 Query: 1067 RTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQ 1126 R A GKDLRP +K++D GN++ I GTD+PA+Y L AIV + +G + GD LARIPQ Sbjct: 1176 RPAAGKDLRPMVKLLDENGNELNIAGTDLPARYALSSGAIVSVANGANVGVGDILARIPQ 1235 Query: 1127 ESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPY 1186 ES T+DITGGLPRVADLFEAR+PKEPA+LAE SG + FGK+TKGK+RL+IT DG + Sbjct: 1236 ESSKTRDITGGLPRVADLFEARKPKEPALLAEASGTIGFGKDTKGKQRLIITKDDG-ETV 1294 Query: 1187 EEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGV 1246 EE+IPKWR +NVFEGERVERG+VI+DG A HDILRL+GV A+ Y+V E+QDVYRLQGV Sbjct: 1295 EELIPKWRHVNVFEGERVERGEVIADGELASHDILRLKGVTALAEYLVKEIQDVYRLQGV 1354 Query: 1247 KINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDL 1306 KINDKHIEVIVRQMLRK + G + L GEQVE++ + N+ A GK A Y L Sbjct: 1355 KINDKHIEVIVRQMLRKVEVTAPGDTRLLRGEQVEHALLIDENKRAMAEGKQPALYEPLL 1414 Query: 1307 LGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYH 1366 LGITKASLATESFISAASFQETTRVLTEAAV G D L GLKENVIVGRLIPAGTG +YH Sbjct: 1415 LGITKASLATESFISAASFQETTRVLTEAAVRGSTDRLVGLKENVIVGRLIPAGTGLSYH 1474 Query: 1367 QDRMRRRAAGEAPAAPQVTAEDASASL 1393 Q+R R+R ++ ED +L Sbjct: 1475 QERRRQRVLDSGKV--EMATEDLEQAL 1499 >UniRef50_D1B5Y2 DNA-directed RNA polymerase n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B5Y2_THEAS Length = 1651 Score = 932 bits (2408), Expect = 0.0, Method: Composition-based stats. Identities = 450/1085 (41%), Positives = 651/1085 (60%), Gaps = 55/1085 (5%) Query: 143 SYVVIEGGMTNLERQQILTE-EQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQL 201 ++VIE G + ER I+TE E+YL + F A +GAE + LLK +DL+ L Sbjct: 298 CHIVIEKGESPFERGDIITESEEYL--CSRYDKSFMAGIGAEGVLELLKRIDLDDLATSL 355 Query: 202 REELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFA 261 REE+ E+ S K++KL KR++++E F +S ++PEWMIL+VLPV+PPDLRP+V LDGGRFA Sbjct: 356 REEIAES-SGQKKRKLVKRLQVVEDFRKSDSRPEWMILSVLPVIPPDLRPMVQLDGGRFA 414 Query: 262 TSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNK 321 TSDLNDLYR+VINRNNRLK+L++L AP+II+RNEKRMLQE+VDAL+DNGRRG+ + G+ Sbjct: 415 TSDLNDLYRKVINRNNRLKKLMELRAPEIIIRNEKRMLQESVDALIDNGRRGKPVPGAGG 474 Query: 322 RPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFI 381 RPLKSL D+++GK+GRFRQNLLGKRVDYSGRSVI +GP L+++QCGLPK+MALELFKPF+ Sbjct: 475 RPLKSLTDLLRGKKGRFRQNLLGKRVDYSGRSVIVIGPNLKIYQCGLPKQMALELFKPFV 534 Query: 382 YGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVL 441 KL RGLA +K A++++ER + VW IL+E+I++HPVLLNRAPTLHRLGIQAFEPVL Sbjct: 535 VHKLVERGLAANVKNARRLIERGKDEVWAILEEIIKDHPVLLNRAPTLHRLGIQAFEPVL 594 Query: 442 IEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIV 501 IEGKAI+LHPLVC A+NADFDGDQMAVHVPL+LEAQ EAR LM+S+NN+LSP++G+PI+ Sbjct: 595 IEGKAIRLHPLVCTAFNADFDGDQMAVHVPLSLEAQAEARILMLSSNNLLSPSSGKPIVT 654 Query: 502 PSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANG 561 P+QD++LG+YY+T + KG+GM ++ G+ ++ARV VR Sbjct: 655 PTQDIILGVYYLTGMKPDLKGDGMYFRDEEDVLSALDHGVVHVNARVYVRNRPEWGLGED 714 Query: 562 ELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFA 621 + + +T+ GR + +P+ L +N+ LGKK +L+ Y ++G V Sbjct: 715 KWL------ETSPGRVVFNCAMPEKLR--FINRQLGKKDFGALLDRAYDLVGQAAMVEML 766 Query: 622 DQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNK 681 D I G+ ++ +SG S+GI D+++P +K I+ E E+ Q+ G++T E + Sbjct: 767 DGIKQLGYKWSTKSGISLGIGDVIVPPQKESIVRETMVHEEELSAQYDMGILTEDEYMRQ 826 Query: 682 VIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLA 741 +W+ A + ++DN+ + N + +M DSGARGS +Q+ Q+A Sbjct: 827 KDALWSEAVKNIVDKIVDNMDVD---------------NPLRIMVDSGARGSKSQVAQMA 871 Query: 742 GMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLV 801 G+RGLMA P G II+ PI +NFR+GLN+L+YFISTHGARKGL+DTA++TA SGYLTRRLV Sbjct: 872 GIRGLMADPSGKIIDYPIVSNFRDGLNMLEYFISTHGARKGLSDTAMRTAKSGYLTRRLV 931 Query: 802 DVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRN 861 DVAQDL++TE+DCGT G+ M P+ + V PL +RV GRV DV+ LV Sbjct: 932 DVAQDLIITEEDCGTDRGVEMRPLKQESKVVIPLSERVAGRVALRDVIL-SDGTCLVRAG 990 Query: 862 TLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQ 921 + ++ L+ V++V VRS ++C G+C CYG+DLA H + GEA+GV+AAQ Sbjct: 991 QEIDQETAKALDRAGVESVWVRSPLTCALRHGICRTCYGKDLATRHRVAIGEAVGVVAAQ 1050 Query: 922 SIGEPGTQLTMRTFHIGGA---ASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSR 978 SIGEPGTQLTMRTFH GG + +++ ++ +++ +V+ R Sbjct: 1051 SIGEPGTQLTMRTFHTGGVRQFTGEDITQGLPRIEQLFEVRKPKKAALIAEHDGVVVERR 1110 Query: 979 NTE------LKLIDEFGRT-KESYKVPYGAVLA--KGDGEQVAGGETVAN--WDPHTMPV 1027 E + + E G + Y +P L +G + G+ + DP + Sbjct: 1111 EGEGKKKLVVAVPREDGGEDRVVYTLPASQNLLPGVEEGAPIHRGQVLTEGYIDPQQLLE 1170 Query: 1028 ITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGND 1087 + + R+ Q + V+L +++++ G+ Sbjct: 1171 VEGLEAVQRYILDGIQDVYRSQGVSINDKHIEVILRKVAPVN-------RVRVIEE-GDS 1222 Query: 1088 VLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTL-ARIPQESGGTKDITGGLPRVADLFE 1146 + G + + + ++ + L + +++ G+ D T G+ R +L Sbjct: 1223 SFVAGELVWKEDLEAESRRISEQNARFLEEASFLCGAVVKDAVGSLDGT-GITRDEEL-- 1279 Query: 1147 ARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVER 1206 K +L+ G + + VI E + L V +G + Sbjct: 1280 -TMDKLGRLLSPGVGASELICQDREGLLRVIVGEASFKRELEGLELLSDLPVADGCVISA 1338 Query: 1207 GDVIS 1211 G ++ Sbjct: 1339 GSRLT 1343 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 108/373 (28%), Positives = 172/373 (46%), Gaps = 41/373 (10%) Query: 1025 MPVITEVSGFVRFTDMI--DGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD 1082 +P+ V+G V D+I DG + R E+ ++ + + + +R L Sbjct: 963 IPLSERVAGRVALRDVILSDGTCLVRAGQEIDQETAKALDRAGVESVW---VRSPLTCAL 1019 Query: 1083 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDTLARIPQESGGT-----KDITG 1136 G G D+ ++ + V + I G L +GG +DIT Sbjct: 1020 RHGICRTCYGKDLATRHRVAIGEAVGVVAAQSIGEPGTQLTMRTFHTGGVRQFTGEDITQ 1079 Query: 1137 GLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVI---TPVDGSDPYEEMIPKW 1193 GLPR+ LFE R+PK+ A++AE G+V +E +GK++LV+ G D +P Sbjct: 1080 GLPRIEQLFEVRKPKKAALIAEHDGVVVERREGEGKKKLVVAVPREDGGEDRVVYTLPAS 1139 Query: 1194 RQLN--VFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDK 1251 + L V EG + RG V+++G P +L + G+ AV RYI++ +QDVYR QGV INDK Sbjct: 1140 QNLLPGVEEGAPIHRGQVLTEGYIDPQQLLEVEGLEAVQRYILDGIQDVYRSQGVSINDK 1199 Query: 1252 HIEVIVRQM--LRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGI 1309 HIEVI+R++ + + ++ G S F+ GE V ++ +R + Sbjct: 1200 HIEVILRKVAPVNRVRVIEEGDSSFVAGELVWKEDLEAESRRISEQNAR----------- 1248 Query: 1310 TKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA--YHQ 1367 L SF+ A ++ L + RDE + + +GRL+ G G + Q Sbjct: 1249 ---FLEEASFLCGAVVKDAVGSLDGTGIT--RDEELTMDK---LGRLLSPGVGASELICQ 1300 Query: 1368 DR--MRRRAAGEA 1378 DR + R GEA Sbjct: 1301 DREGLLRVIVGEA 1313 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 99/241 (41%), Positives = 139/241 (57%), Gaps = 23/241 (9%) Query: 15 EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74 +E +++ L+SP+ IR+ S GEVKKPETINYRT +PE+DGLFC RIFGP + +EC CGK Sbjct: 4 KEIVGVRVKLSSPERIRAISCGEVKKPETINYRTLRPEKDGLFCERIFGPTRSFECACGK 63 Query: 75 YKRL--KHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPL 132 YKR K +GV+C++CGVEVT +VRRERMGHIELA+P HIW+L+ +PSR+ LL+ Sbjct: 64 YKRSGPKFKGVVCDRCGVEVTDNRVRRERMGHIELAAPVVHIWYLRGIPSRLSLLIGTST 123 Query: 133 RDIERVLYF--------ESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEA 184 +D+ERV+YF VV+EG T+L R+ + + +F A+ EA Sbjct: 124 KDLERVVYFAPNRRREAAYKVVVEGRRTDLVRRGDVISASEERIHRFYDSKFKAE---EA 180 Query: 185 IQALL---------KSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPE 235 + + + L Q R E + +T+R + + QS PE Sbjct: 181 FRVVRVDEIPVAEGDVITLHQLARY-RAEFGDGIFDTERAYQVRGEEGTRVVPQSKVSPE 239 Query: 236 W 236 Sbjct: 240 D 240 Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats. Identities = 44/101 (43%), Positives = 58/101 (57%), Gaps = 11/101 (10%) Query: 1276 EGEQV---------EYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQ 1326 GE V ++ + T+ L GITKA+LAT+SF+SAASFQ Sbjct: 1530 PGEMVVRPILAQGEHRRLIQRI--SFVRRLRELPTWKPVLHGITKAALATDSFLSAASFQ 1587 Query: 1327 ETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQ 1367 +T +VL AAV G+ D L GLKENVI+G LIP+GTG ++ Sbjct: 1588 QTAQVLASAAVRGEVDNLLGLKENVIIGLLIPSGTGIDKYR 1628 >UniRef50_C6UN03 DNA-directed RNA polymerase n=1 Tax=Candidatus Hodgkinia cicadicola Dsem RepID=C6UN03_HODCD Length = 1376 Score = 930 bits (2404), Expect = 0.0, Method: Composition-based stats. Identities = 457/1371 (33%), Positives = 688/1371 (50%), Gaps = 71/1371 (5%) Query: 12 TKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECL 71 +E ++ ++LASP+ + SWS+GE++ + ++ T KP GLFC +IFG + ECL Sbjct: 29 ASSEAVRSVSLSLASPETVLSWSYGEIEHASSYDFATGKPVEGGLFCPKIFGSSNEGECL 88 Query: 72 CGKYKRLKHRGVICEKCGVEVT-QTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDM 130 C + ++C CGVE+ + R R HI+LA+P H WF S + LL Sbjct: 89 CDEP--TADDEMVCAVCGVEMAVGWRCARSRFAHIDLAAPVVHAWFHGSALPILVLLTGQ 146 Query: 131 PLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLK 190 P + +++ +++VV L QI+ + A G A++ LL Sbjct: 147 PTATLLKLISCDAHVVRST-TGGLIEGQIVDTDALRKAWSASSWR-QLVSGGLAVRDLLA 204 Query: 191 SMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLR 250 + ++ + KL K+++L+E FV S KP W L VLPVLP LR Sbjct: 205 KCR-PELVKRALALELAAAPPSAAAKLRKKLQLIEGFVASKAKPTWAALEVLPVLPASLR 263 Query: 251 PLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLD-LAAPDIIVRNEK----RMLQEAVDA 305 P+V L R A+SDLN+LY R+++ N + + D L D + +E R LQ +VDA Sbjct: 264 PMVMLQADRCASSDLNELYSRIVSANRVVAAMYDALWRGDHVACDEVLDGLRALQRSVDA 323 Query: 306 LLDNGRRGRA---ITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLR 362 L+DN R + TG + LKSL +++KGK+GRFRQ LLG+RVDYSGRSVI GP L+ Sbjct: 324 LIDNTSRSASEVRPTGRSSVALKSLTELLKGKRGRFRQTLLGRRVDYSGRSVIAPGPELK 383 Query: 363 LHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVL 422 L++CGLP+ MA ELFKPF+ KL L + K + + L EV PV+ Sbjct: 384 LYECGLPRAMAAELFKPFVRAKLMLTCGVRSASKLKLLTASRPELEARALCEVAEFWPVV 443 Query: 423 LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARA 482 LNRAPTLH+L +QAF L + K I+LHPLVCA +NADFDGDQMAVHVPL+ EA+ EA A Sbjct: 444 LNRAPTLHKLSMQAFRARLTDSKVIRLHPLVCAGFNADFDGDQMAVHVPLSYEARAEALA 503 Query: 483 LMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLA 542 LM+ST N+L PA+G IVP+QD+VLGLYYMT V AK + + + Sbjct: 504 LMLSTRNVLHPAHGMLAIVPTQDMVLGLYYMT--VVAAKRADVRFASYADVNAALMARAV 561 Query: 543 SLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPK--GLPYSIVNQALGKKA 600 LH RV+ + A + ++T GR ++ +VP+ G Y+ AL K Sbjct: 562 GLHTRVEFCAST---------DAGQVVIESTPGRLLVNELVPQACGFLYTTSMPALSKSE 612 Query: 601 ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAE 660 I K+ + G + V+F +++M GF +A SG S+ D+ K + A Sbjct: 613 IIKLTEDVLEVCGKREAVVFCEELMLLGFKHATLSGTSLACADLKACGYKQRALQSARRA 672 Query: 661 VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFN 720 VA + +G A R +WA A +V A+ ++ + Sbjct: 673 VARLAPGA-AGFPNARRRRLAFAKVWADAVQKVHAAVDLDVARRDELQ-----------T 720 Query: 721 SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR 780 S+ +M SGARG+ AQ+RQL G RG + G+ P+ A++R+GL+ ++F ST AR Sbjct: 721 SVQVMLASGARGTPAQLRQLVGARGEVVGFGGTPCLMPVLASYRDGLSTAEFFYSTFAAR 780 Query: 781 KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVL 840 +GL DT LKTA+SGYLTRRL++VA++ VTE DCG EG+ + + + ++L Sbjct: 781 RGLVDTVLKTASSGYLTRRLIEVAREYTVTELDCGEGEGLDVDVTTD----LARAKHKLL 836 Query: 841 GRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYG 900 GR+ A+ V+ + +L N ++ + LL +V++RS ++C + GVCA CYG Sbjct: 837 GRLVAKRVV--ESGRLLADVNEIITRRCVGLLAGAGCASVRIRSPLTCLAESGVCAACYG 894 Query: 901 RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAA----SRAAAESSIQVKNKG 956 +L+ G + GEA+GV+AAQSIGEPGTQLT+RTFH G A S A + + G Sbjct: 895 VNLSTGKMAKLGEAVGVLAAQSIGEPGTQLTLRTFHGAGQAERVQSAQANAAHVVAACDG 954 Query: 957 SIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGET 1016 I + N+ V +G +V+ + ++ E E + GA + DGE+V G Sbjct: 955 VISIQNLACVRTLAGDVVVAGSRAVISVVSERAPPAE-HVACRGARVLVADGERVHRGRV 1013 Query: 1017 VANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRP 1076 + ++ G + ++ G RQ D TGL+ + SA+ D R Sbjct: 1014 LCVLYATDERYVSLAFGSLHLEGVLCGVNAKRQLDAETGLTRFDLTASAQ------DGRQ 1067 Query: 1077 ALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITG 1136 + + + + + A V + D V ++ I Sbjct: 1068 RVSVRSGFCGVAYELSSKLFSSLLAGAGAAVSVFDQVFSRQ--------RQRPRPASIAQ 1119 Query: 1137 --GLPRVADLFEARRPKEPAI--LAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPK 1192 GL +++ LF+ + + A+ A +G + G V+ P + + Sbjct: 1120 LEGLSKLSKLFDNQ-AGDVAVGMTAPEAGWLRAGDSAPDGCVCVMDPDE--PAKWPAVCY 1176 Query: 1193 WRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKH 1252 R+ R+ERGD I+ G L G V++VQ ++ QGV +N KH Sbjct: 1177 VRRPLHAACVRLERGDAIAPGDVDMSAFASLHGFDRFANLFVDKVQQLFDYQGVSLNSKH 1236 Query: 1253 IEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKA 1312 IEV++RQM A + AGS+ GE V + + N A G V AT R ++ + A Sbjct: 1237 IEVVLRQMTDTAVVTGAGSTALKPGEVVAWRLLAETNALALAGGGVAATGLRRVVSVADA 1296 Query: 1313 SLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGY 1363 S +S+ SF + L E ++G + + +K+++I+GRL P GTG+ Sbjct: 1297 CANHASLLSSISFYGAVKTLAELVISGGKHSVSAIKDHIIMGRLAPVGTGF 1347 >UniRef50_O21238 DNA-directed RNA polymerase n=3 Tax=Eukaryota RepID=O21238_RECAM Length = 1384 Score = 927 bits (2396), Expect = 0.0, Method: Composition-based stats. Identities = 446/1408 (31%), Positives = 723/1408 (51%), Gaps = 133/1408 (9%) Query: 20 IKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLK 79 IK++L P+ I S GEV +T+N +T++PE GLFC +IF +C + Sbjct: 34 IKLSLFDPEQILKKSSGEVCTSKTLNSKTYEPEDGGLFCNKIFKTNSKNNYICNVCSYRQ 93 Query: 80 HRGVICEKCG--VEVTQTKVRRERMGHIELASPTAHIWFLKS-LPSRIGLLLD--MPLRD 134 + C +CG ++ ++ ++ MGHIEL SP H W L++ + R+ + L+ ++ Sbjct: 94 SKPYRCLRCGSNTKLDKSNIQNLSMGHIELISPIPHPWLLRTKIIHRLAVGLNNIYDYKE 153 Query: 135 IERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDL 194 I+++L + + +Q+ + Y + ++F K Sbjct: 154 IDKIL------LTDPETIYNYFEQMDLLDVYFNLRNYLINDFIIKK-------------- 193 Query: 195 EQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVP 254 + + + K+I+++ ++ +PEW L +PVL P RPL+ Sbjct: 194 ----NKKNINNINIDKNIIYYAIKKKIRIITTLIRLKQRPEWFFLKRIPVLSPTYRPLMK 249 Query: 255 LDGGRFATSDLNDLYRRVINRNNRLKRLL-------------------DLAAPDIIVRNE 295 LD F SD+N LY+ +I RNN LK LL D D + Sbjct: 250 LDDKLFVASDINFLYQNIIERNNILKELLKRYSLEKIDRISSLFTEIIDEVKKDNPIIKG 309 Query: 296 KRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVI 355 K LQ+AV L+D+ IT N KSL + GK+GRFR+++LGKR+++SGR+VI Sbjct: 310 KINLQKAVTTLMDSSFIKGIITFKN----KSLIKRLSGKKGRFRKDILGKRINFSGRTVI 365 Query: 356 TVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGL--ATTIKAAKKMVEREE-------- 405 T GP L L+QCGLP ++ LELFKPFI K+ + T++K K + ++ Sbjct: 366 TSGPRLHLNQCGLPIELVLELFKPFIILKMRDLNICSQTSLKNLKTYDDFKQILFNKFTI 425 Query: 406 AVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQ 465 +V+ +++ +I +HPVLLNRAPTLHR+ IQ F P+LI KAIQLHPLVC+++NADFDGD Sbjct: 426 NLVFKLINSIISKHPVLLNRAPTLHRMNIQTFSPLLIYTKAIQLHPLVCSSFNADFDGDT 485 Query: 466 MAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGM 525 MA+++P TL +Q+E+R LMMS+ NI+SP+ EPII P+QD+V GLYY T + GEG Sbjct: 486 MAIYIPHTLRSQIESRVLMMSSTNIISPSTQEPIISPTQDIVFGLYYATVMYQGSIGEGR 545 Query: 526 VLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPK 585 + E + LH+ + ++ D + ++ TT GR +L+ ++ + Sbjct: 546 LYGDVNEIKNAINFLELDLHSPISFKL-----DKDNVVL-------TTSGRILLYYLLLE 593 Query: 586 --GLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDD 643 + + VN+ KK I ++ + L T DQIM GF YA ++G S+ +D Sbjct: 594 FVNIDFKYVNKVFDKKEIVSLIKMISNLNNLNKTSFILDQIMSFGFYYAYKAGISLHKND 653 Query: 644 MVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQT 703 + P K + + + +V + + F G+++ E+ ++++ W+ + ++ ++ ++ Sbjct: 654 INTPNLKELFVYKTKKKVEDDLKNFSRGIISIDEKSKRLLNEWSKCSSILANQILKDVIY 713 Query: 704 ETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANF 763 + +SIYM+ +SGARGS Q+RQL G+RGLM KP G I+E PI +NF Sbjct: 714 TVPNRK----------SSIYMLINSGARGSMVQMRQLCGIRGLMIKPSGDILEIPIISNF 763 Query: 764 REGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMT 823 +EGL+V+ YF STHGARKG+ DT+LKTA SGYLTR+L A+DL +TE DCGT +GI+ Sbjct: 764 KEGLSVVDYFNSTHGARKGVIDTSLKTAASGYLTRKLFYAAKDLFITEIDCGTRKGIIFG 823 Query: 824 PVIEGGDV--KEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVK 881 + D + ++GR+ ++ P T +ILV + ++ +L+ + ++ V Sbjct: 824 NLKYQRDGYKIDSFYKNIVGRILVRNIKNPYTGEILVKKGLIVTNLVLNLIIKFGIEFVV 883 Query: 882 VRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAA 941 RS ++C+T G+C CYG I++ E+IG+IAAQSIGEPGTQLTMRTFH GG Sbjct: 884 TRSPMTCETRNGICRKCYGSIGNNNEIVSLEESIGIIAAQSIGEPGTQLTMRTFHQGGTV 943 Query: 942 SRAAAESSIQVKNKGSIKLSNVKSV--VNSSGKLVITSRNTELKLIDEFGRTKESYKVPY 999 R A E+ + + + N K V +NS K+ I RN+++ L D SYK+PY Sbjct: 944 LRGANENRLYSSYNARVLIYNRKVVKGINSITKINI-HRNSKILLFDLNYSLLISYKIPY 1002 Query: 1000 GAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSL 1059 GA L DG ++ G + +++ +T+P+++ G V F + + + D ++G+ Sbjct: 1003 GATLYVDDGSIISKGTLLFDYNSYTIPILSNYKGNVFFQEKNQKISSVKVRDSMSGIV-- 1060 Query: 1060 VVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGD 1119 + G + + + N + I +M + ++ + + + GD Sbjct: 1061 ----KSNFNLGINNFKRWFLV----NNSLKIENINM-------SQDLLNIMENSIVKKGD 1105 Query: 1120 TLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITP 1179 + RI + +DITGGL +++ LFE + + ++ + G + F E + ++ Sbjct: 1106 VIGRINISNKIVQDITGGLSKISKLFECIQ-NQSCLITPVEGYIKFNYEPSVSKFVLYVL 1164 Query: 1180 VDGSDPYEEMIPKW------RQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYI 1233 ++++ + L V + + V +GD++S G +I + ++ Sbjct: 1165 TKDEKTKKDLLVRIGTVHELDNLFVRQNDYVYQGDLLSSGIVPIREIAEKIEFESSFYHL 1224 Query: 1234 VNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAG-SSDFLEGEQVEYSRVKIAN--- 1289 + ++Q Y GV IN KHIEVI+ QM K T ++ D E + N Sbjct: 1225 LEQIQSTYFENGVTINQKHIEVIISQMFFKITCMDLYLDKDHFINETKTSEIKEKINIKY 1284 Query: 1290 --------------RELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEA 1335 L G + L GI++ + SF+S+ASFQ+T++VLTEA Sbjct: 1285 KPTRFNKDFFCHQSIRLLVMGLLPIKGKISLGGISQIGVLGGSFLSSASFQKTSKVLTEA 1344 Query: 1336 AVAGKRDELRGLKENVIVGRLIPAGTGY 1363 A+ D L G + N+ G L+P GTG Sbjct: 1345 ALWKGFDPLIGAQPNLFFGSLMPIGTGL 1372 >UniRef50_Q2W2I2 DNA-directed RNA polymerase subunit beta' n=10 Tax=Bacteria RepID=RPOC_MAGSA Length = 1496 Score = 926 bits (2392), Expect = 0.0, Method: Composition-based stats. Identities = 435/878 (49%), Positives = 594/878 (67%), Gaps = 27/878 (3%) Query: 526 VLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPK 585 V E E +LH +++ R + E T + DTT GR +L +I+PK Sbjct: 631 VFVNMAEIEEALTEKTITLHTKIRARFD----TVDSEGTPVTQIVDTTPGRMMLSVILPK 686 Query: 586 G--LPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDD 643 +P+S++N+ L KK I +++ YR G K TVIFAD++M G++ A ++G S G DD Sbjct: 687 NKNVPFSLINRLLTKKEIQNVIDVVYRHCGQKETVIFADRVMGLGYSNAFKAGISFGKDD 746 Query: 644 MVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQT 703 +VIP +K ++ E E + E ++Q+Q GL+T GE+YNKV+D W+ D V+ AMM + + Sbjct: 747 LVIPPEKETLVGETEEKAKEYEQQYQDGLITQGEKYNKVVDAWSKCTDDVADAMMKQISS 806 Query: 704 ETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANF 763 + NSIYMMA SGARGSAAQ++QLAGMRGLMAKP G IIETPI +NF Sbjct: 807 LVPGKQ---------INSIYMMAHSGARGSAAQMKQLAGMRGLMAKPSGEIIETPIISNF 857 Query: 764 REGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMT 823 +EGL VL+YF STHGARKGLADTALKTANSGYLTRRLVDVAQD ++ E+DCGT G+ ++ Sbjct: 858 KEGLTVLEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDAIICEEDCGTTNGLTVS 917 Query: 824 PVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVR 883 PVIEGG+V L +R+LGR A D++ P T +++V ++ E +L++ ++ V +R Sbjct: 918 PVIEGGEVIASLAERILGRSAARDIVNPLTGEVIVKAAQMIQETEVELIDAAGIETVVIR 977 Query: 884 SVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASR 943 SV++CD++ GVC CYGRDLARG +N GEA+GVIAAQSIGEPGTQLTMRTFHIGGAA R Sbjct: 978 SVLTCDSEEGVCGSCYGRDLARGTRVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQR 1037 Query: 944 AAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVL 1003 A +SSI+ G++++ N VVNSSG ++ SRN E+ L+D R + ++VPYGA L Sbjct: 1038 GAEQSSIEATFDGTVQVINRNVVVNSSGASIVMSRNCEVALLDINNRERARHRVPYGAKL 1097 Query: 1004 AKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLD 1063 + ++V G +A WDP+T+P+ITE +G + D+ +G ++ DE TG++S VV+D Sbjct: 1098 LVDEAQKVTKGTKLAEWDPYTLPIITERAGVAHYVDLTEGLSMREVVDEATGIASKVVVD 1157 Query: 1064 SAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLAR 1123 ++ G DLRP + + D +G ++L+ + A+YF+ AI+ +E+ ++++GD LAR Sbjct: 1158 WKQQPRGA-DLRPRVTLRDEKGEELLL-ANGLEARYFMSVDAILSVENNTKVNAGDVLAR 1215 Query: 1124 IPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGS 1183 IP+ES T+DITGGLPRVA+LFEAR+PK+ AI+++ G V FGK+ K KRR+++ P +G Sbjct: 1216 IPRESSKTRDITGGLPRVAELFEARKPKDHAIISDCDGRVEFGKDYKSKRRILVVPEEG- 1274 Query: 1184 DPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRL 1243 D E +IPK + ++V EG+ V RGD + DG PHDIL++ GV A+ +Y++NE+Q+VYRL Sbjct: 1275 DAIEYLIPKGKHISVQEGDYVRRGDPLMDGNPVPHDILKVLGVEALAQYLINEIQEVYRL 1334 Query: 1244 QGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYS 1303 QGVKINDKHIEVIVRQML+K I + G + L GEQV+ I N + A+ + Sbjct: 1335 QGVKINDKHIEVIVRQMLQKVEITDPGDTTLLVGEQVDRVEFDIENSKAIREQGRPASGT 1394 Query: 1304 RDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGY 1363 L GITKASL T SFISAASFQETTRVLTEAAV+GK D L+GLKENVIVGRLIPAGTG Sbjct: 1395 PVLQGITKASLQTHSFISAASFQETTRVLTEAAVSGKVDSLQGLKENVIVGRLIPAGTGA 1454 Query: 1364 AYHQDR---------MRRRAAGEAPAAPQVTAEDASAS 1392 ++ R M+ E PA P V A + Sbjct: 1455 VMNRLRAIAAKRDKDMQVEGESEVPAIPPVAEGSAPEA 1492 Score = 765 bits (1976), Expect = 0.0, Method: Composition-based stats. Identities = 415/573 (72%), Positives = 485/573 (84%), Gaps = 1/573 (0%) Query: 1 MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60 M +L+K + T+ FD I+I++ASP+ IRSWS+GE+KKPETINYRTFKPERDGLFCAR Sbjct: 1 MNELMKIFGQVSGTQSFDQIRISIASPERIRSWSYGEIKKPETINYRTFKPERDGLFCAR 60 Query: 61 IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120 IFGP+KDYECLCGKYKR+K+RG+ICEKCGVEVT KVRRERMGHIELASP AHIWFLKSL Sbjct: 61 IFGPIKDYECLCGKYKRMKYRGIICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL 120 Query: 121 PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFG-DEFDAK 179 PSRIGLL DM L+D+ER+LYFE+YVV+E G+T L+ +++LTEEQY+ A++E+G D F AK Sbjct: 121 PSRIGLLCDMTLKDLERILYFENYVVVEPGLTPLKIRELLTEEQYMRAVDEYGEDAFTAK 180 Query: 180 MGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMIL 239 +GAEAI+ +L +DLE E QL+ +L ET SE KRKKL KR+KL+EAF++SG++PEWMIL Sbjct: 181 IGAEAIRDMLTVIDLETEKAQLKVDLKETTSEAKRKKLVKRMKLVEAFMESGSRPEWMIL 240 Query: 240 TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRML 299 V+PV+PP+LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL++L AP+IIVRNEKRML Sbjct: 241 EVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPEIIVRNEKRML 300 Query: 300 QEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP 359 QEAVDAL DNGRRGRAITG+NKRPLKSL+DM+KGKQGRFRQNLLGKRVDYSGRSVI VGP Sbjct: 301 QEAVDALFDNGRRGRAITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP 360 Query: 360 YLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREH 419 L+LHQCGLPKKMALELFKPF+Y KLEL G+ATTIKAAK+MVE+E VWDIL+EVIREH Sbjct: 361 ELKLHQCGLPKKMALELFKPFVYSKLELYGMATTIKAAKRMVEKERPEVWDILEEVIREH 420 Query: 420 PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLE 479 PV+LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVC A+NADFDGDQMAVHVPL+LEAQLE Sbjct: 421 PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE 480 Query: 480 ARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRS 539 AR LMMSTNNILSPANG+PIIVPSQD+VLG+YY+T + G+ + + E + + Sbjct: 481 ARVLMMSTNNILSPANGKPIIVPSQDIVLGIYYITMERDEVPGQVLKIRSMDELKGAIAN 540 Query: 540 GLASLHARVKVRITEYEKDANGELVAKTSLKDT 572 + KD + L S T Sbjct: 541 NAILFYCPTDPNTKIDTKDLDTLLDRLASRNVT 573 >UniRef50_P47582 DNA-directed RNA polymerase subunit beta' n=6 Tax=Mycoplasma RepID=RPOC_MYCGE Length = 1292 Score = 922 bits (2382), Expect = 0.0, Method: Composition-based stats. Identities = 444/1184 (37%), Positives = 660/1184 (55%), Gaps = 136/1184 (11%) Query: 1 MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60 M + + + AIK+++AS D I +WS GEV K ETINY++ KPE GLF Sbjct: 1 MTTTRRNKRNNKLYKNIKAIKLSIASNDTILNWSEGEVTKAETINYKSLKPEPGGLFDEA 60 Query: 61 IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120 IFGPVKDYEC CGK+K++K+RGV C++CGV VT++ VRRERMGHI L SP AHIW K L Sbjct: 61 IFGPVKDYECACGKFKKIKYRGVRCDRCGVWVTESIVRRERMGHIALVSPVAHIWMSKEL 120 Query: 121 PS--RIGLLLDMPLRDIERVLYFESYVVIEGGM--------------------------- 151 PS +I L+L++ +++E+VLYF +Y+V++ G Sbjct: 121 PSPSKISLVLNISYKEVEQVLYFVNYIVLDTGKIKDDKIMPFKFKEVLDLTGKGSLSTRQ 180 Query: 152 -------------------TNLERQQILTEEQYLDALE----------EFGDEFDAKMGA 182 + + +I E +L + F +GA Sbjct: 181 KMRRVIGYIFRNLIKSKSSEDYRKGKIFYESLKNSSLPFSLNDAFNYIKKYTGFRVGIGA 240 Query: 183 EAIQALLKSMDLEQECEQLREELNETNSET----KRKKLTKRIKLLEAFVQSGNKPEWMI 238 EAI LL +DL E +L + L + ++ K KK+ ++++ + F S P+ MI Sbjct: 241 EAILELLNKIDLNLEFSRLNDALRKAKKDSVEDAKVKKILRQLETISWFRNSKLHPKNMI 300 Query: 239 LTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAA-PDIIVRNEKR 297 L +PV+PPD+RP++ LDG +F TSD+N+ YRRVI RN+RL+R+L+ P I+V NEKR Sbjct: 301 LHTVPVIPPDIRPIIQLDGAKFTTSDINNFYRRVIIRNDRLRRILEDGTVPSIVVNNEKR 360 Query: 298 MLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITV 357 +LQE+VDAL DN R + +KR LKSL D +KGKQG FR NLLGKRVDYSGRSVI V Sbjct: 361 LLQESVDALFDNSSRHKPSLSKDKRSLKSLTDRLKGKQGLFRHNLLGKRVDYSGRSVIVV 420 Query: 358 GPYLRLHQCGLPKKMALELFKPFIYGKL---------ELRGLATTIKAAKKMVEREEAVV 408 GP L++++ G+P M L+LFKPFI L E+R +A +I+ A+ M++ ++ ++ Sbjct: 421 GPELKMYEVGIPALMILKLFKPFIIHGLINKFDENGNEIRPIAASIRQAEDMIKNQDDLI 480 Query: 409 WDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAV 468 W I+ +VI++ PVLLNRAPTLHRLGIQAFEP +++GKAI+LHPLV A+NADFDGDQMAV Sbjct: 481 WGIVYDVIKDRPVLLNRAPTLHRLGIQAFEPRIVDGKAIRLHPLVTTAFNADFDGDQMAV 540 Query: 469 HVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLT 528 HVPL+ A EARA+++++ +IL +G PI+ P+QD+VLG YY+T + GEG++ + Sbjct: 541 HVPLSENAVNEARAVLLASKHILGLKDGRPIVTPTQDMVLGNYYLTTERKGQLGEGIIFS 600 Query: 529 GPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLP 588 EA Y S LHA V + + N + + +L TTVG+ I ++ +P Sbjct: 601 TVYEARAAYESQKVHLHAIVGISTKAF---PNKKFACQGTLI-TTVGKIIFNDVLGNNVP 656 Query: 589 Y-----------------------------SIVNQALGKKAISKMLNTCYRILGLKPTVI 619 Y + A KK ISK+++ Y +L K Sbjct: 657 YINDGEFDENACPEKFIVKQGEDVRQSILKHQIIPAFSKKVISKLIDLLYLLLEFKDLPK 716 Query: 620 FADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERY 679 D I GF Y+ S +V + D+ K A+ +V + ++ + GL+T ERY Sbjct: 717 TLDNIKALGFKYSTFSSTTVSVFDIPKYTNKQNYFDSADQQVLKYKQFYNKGLLTDDERY 776 Query: 680 NKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQ 739 +V+ +W ++VS + + ++ E Q NSI +MADSGARG+ + Q Sbjct: 777 KRVVKLWNNVKEKVSDEIQNLIKQE-----------QYRDNSIVVMADSGARGNISNFTQ 825 Query: 740 LAGMRGLMAKPD-----------GSIIETPITANFREGLNVLQYFISTHGARKGLADTAL 788 L GMRGLM+K IE PI +F EGL + +YF S++GARKG+ DTA+ Sbjct: 826 LFGMRGLMSKSFNYERNNQSKIIKDTIEVPIKHSFFEGLTINEYFNSSYGARKGMTDTAM 885 Query: 789 KTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDV--KEPLRDRVLGRVTAE 846 KTA SGY+TR+LVD +L++ DDCGT +GI++ ++E E L DR++ R + Sbjct: 886 KTAKSGYMTRKLVDATHELIINHDDCGTRKGIVVEAIVETKTKSLIESLFDRIVNRYSIT 945 Query: 847 DVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARG 906 ++ P T +V N+L+ Q + S+ V VRSV+ C+ + G+C +C+G DL+ G Sbjct: 946 PIVDPETQKTIVEANSLITTQLAKQICATSIKEVLVRSVIYCERENGICQYCFGIDLSTG 1005 Query: 907 HIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAAS-RAAAESSIQVKNKGSIKLSN--V 963 ++ G A+GVIAAQSIGEPGTQLTMRTFH GG ++ A+ ++K + Sbjct: 1006 KLVELGTAVGVIAAQSIGEPGTQLTMRTFHTGGVSTENNLAQGFERLKQIFEVVTPKDFE 1065 Query: 964 KSVVNSSGKLV--ITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETV--AN 1019 K+V++ V IT+ +++ + + Y +P+ A + G+QV+ G + + Sbjct: 1066 KAVISEVKGTVKSITTVQNAQEVVIKSNVDERIYTIPFSAQIRVHVGDQVSPGSKITEGS 1125 Query: 1020 WDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLD 1063 D + I + ++ + + Q ++ +++ Sbjct: 1126 VDIKQLLRIAGIQRVRQYMIVEIQKVYRIQGIDIADKYVEIIIR 1169 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 96/330 (29%), Positives = 162/330 (49%), Gaps = 8/330 (2%) Query: 1040 MIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQY 1099 ++D +T + + +++ + + +R + G G D+ Sbjct: 947 IVDPETQKTIVEANSLITTQLAKQICATSIKEVLVRSVIYCERENGICQYCFGIDLSTGK 1006 Query: 1100 FLPGKAIVQLEDGVQI-SSGDTLARIPQESGGT---KDITGGLPRVADLFEARRPK--EP 1153 + V + I G L +GG ++ G R+ +FE PK E Sbjct: 1007 LVELGTAVGVIAAQSIGEPGTQLTMRTFHTGGVSTENNLAQGFERLKQIFEVVTPKDFEK 1066 Query: 1154 AILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDG 1213 A+++E+ G V + + +VI D IP Q+ V G++V G I++G Sbjct: 1067 AVISEVKGTVKSITTVQNAQEVVIKS--NVDERIYTIPFSAQIRVHVGDQVSPGSKITEG 1124 Query: 1214 PEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD 1273 +LR+ G+ V +Y++ E+Q VYR+QG+ I DK++E+I+RQ+ + +AG+S+ Sbjct: 1125 SVDIKQLLRIAGIQRVRQYMIVEIQKVYRIQGIDIADKYVEIIIRQLTNLLQVTDAGNSN 1184 Query: 1274 FLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLT 1333 G+ V + N+ L GK+ + GI +A+ + SF+SAASFQ+T ++LT Sbjct: 1185 LFVGQLVHSHYLNELNKSLLLAGKMPVIAINQVFGIDEAASKSNSFLSAASFQDTKKILT 1244 Query: 1334 EAAVAGKRDELRGLKENVIVGRLIPAGTGY 1363 +AAV + D L GLKENVI+G IPAGTG+ Sbjct: 1245 DAAVKNQVDYLLGLKENVIIGGKIPAGTGF 1274 >UniRef50_A4FPP2 DNA-directed RNA polymerase subunit beta' n=54 Tax=Bacteria RepID=RPOC_SACEN Length = 1303 Score = 914 bits (2362), Expect = 0.0, Method: Composition-based stats. Identities = 445/930 (47%), Positives = 596/930 (64%), Gaps = 50/930 (5%) Query: 124 IGLLLDMPLRDIERVLY-FESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGA 182 + L D R+++++ +E++ +E RQ I E Y + + FG+ F MGA Sbjct: 205 MRQLRDRAQRELDKLDEIWETFTKLEP------RQLIADELLYRELYDRFGEYFTGGMGA 258 Query: 183 EAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVL 242 E+IQALL+ D+ E +QLRE + K+ + KR+K++ AF +GN P M+L + Sbjct: 259 ESIQALLQDFDINAEADQLRETIRSGKG-QKKLRALKRLKVVAAFQATGNNPSGMVLNCV 317 Query: 243 PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEA 302 PV+PPDLRP+V LDGGRFATSDLNDLYRRVINRNNRLKRL+DL AP+IIV NEKRMLQE+ Sbjct: 318 PVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDLGAPEIIVNNEKRMLQES 377 Query: 303 VDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLR 362 VDAL DNGRRGR +TG RPLKSL+D++KGKQGRFRQNLLGKRVDYSGRSVI VGP L+ Sbjct: 378 VDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGKRVDYSGRSVIVVGPQLK 437 Query: 363 LHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVL 422 LHQCGLPK+MA+ELFKPF+ +L A IK+AK+MVER+ VWD+L+EVI EHPVL Sbjct: 438 LHQCGLPKEMAVELFKPFVMKRLVDLNHAQNIKSAKRMVERQRPQVWDVLEEVIAEHPVL 497 Query: 423 LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARA 482 LNRAPTLHRLGIQAFEP L+EGKAIQLHPLVC A+NADFDGDQMAVH+PL+ EAQ EAR Sbjct: 498 LNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQMAVHLPLSAEAQAEARI 557 Query: 483 LMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLA 542 LM+S+NNILSPA+G P+ +P D+V GLY++TR AKGEG + EA + G Sbjct: 558 LMLSSNNILSPASGRPLAMPRLDMVTGLYHLTRQLDGAKGEGQSFSSVGEAIMAFDRGGL 617 Query: 543 SLHARVKVRITEYEKDANGELVAK----TSLKDTTVGRAILWMIVPKGLPYSIVNQALGK 598 L A+VK+R+ + +A L +TT+GR ++P+ P VN L K Sbjct: 618 DLQAKVKIRVRDLVPNAEQRPEDWEPGQPWLAETTLGRVWFNELLPEDYP--FVNDLLPK 675 Query: 599 KAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAE 658 K + ++N + D++ GF +A RSG +V I D+V+P K EI+ E Sbjct: 676 KRQAAIVNDLAERYPMVTVAQTLDKLKDAGFHWATRSGVTVSISDVVVPPNKTEILDGYE 735 Query: 659 AEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVS 718 A+ +++++++ G ++ ER +++ +W AA D V++AM N + Sbjct: 736 AKADQVEKRYRRGALSYQERNAELVKVWTAAKDEVAEAMEANFPED-------------- 781 Query: 719 FNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHG 778 NSI M+ SGA G+ Q+ QLAGMRGL++ P G I PI ANFREGL+VL+YFIS HG Sbjct: 782 -NSISMIVKSGAAGNMTQVVQLAGMRGLVSNPKGEYIPRPIKANFREGLSVLEYFISNHG 840 Query: 779 ARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKE----P 834 ARKGLADTAL+TA+SGYLTRRLVDV+QD++V E DCGT GI M + D K Sbjct: 841 ARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCGTERGIRMPIAEKLPDGKLLRDAH 900 Query: 835 LRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGV 894 + V R TAEDV ++++ R + L + + L V VKVRSV++C++ GV Sbjct: 901 VETSVYARTTAEDVTD-SDGNVVLARGSDLGDPAIEKLLAAGVTKVKVRSVLTCESGVGV 959 Query: 895 CAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKN 954 CA CYGR +A G +++ GEA+G++AAQSIGEPGTQLTMRTFH GG A +V+ Sbjct: 960 CAVCYGRSMATGKLVDVGEAVGIVAAQSIGEPGTQLTMRTFHQGGVAGDDITTGLPRVQE 1019 Query: 955 KGSIKLSNVK-SVVNSSGKLVITSRNT--ELKLIDEFGRTKESY-KVPYGAVLA------ 1004 ++ K + ++ G++ + + ++ +I + G + Y K+ LA Sbjct: 1020 LFEARVPKGKAPIADAPGRIRMEDNDRYWKITIIPDDGSEEIVYDKLSKRQRLAAISVDG 1079 Query: 1005 ----KGDGEQVAGGETVAN--WDPHTMPVI 1028 DG+ V G+ + DPH + + Sbjct: 1080 TERQITDGDHVDVGQQLLEGAVDPHEVLRV 1109 Score = 322 bits (825), Expect = 6e-86, Method: Composition-based stats. Identities = 130/346 (37%), Positives = 188/346 (54%), Gaps = 15/346 (4%) Query: 1073 DLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDTLARIPQESGGT 1131 +R L G + G M + V + I G L GG Sbjct: 946 KVRSVLTCESGVGVCAVCYGRSMATGKLVDVGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1005 Query: 1132 K--DITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEE- 1188 DIT GLPRV +LFEAR PK A +A+ G + ++ ++ I P DGS+ Sbjct: 1006 AGDDITTGLPRVQELFEARVPKGKAPIADAPGRIRM-EDNDRYWKITIIPDDGSEEIVYD 1064 Query: 1189 MIPKWRQL----------NVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQ 1238 + K ++L + +G+ V+ G + +G PH++LR+ G ++V EVQ Sbjct: 1065 KLSKRQRLAAISVDGTERQITDGDHVDVGQQLLEGAVDPHEVLRVMGPREAQLHLVREVQ 1124 Query: 1239 DVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKV 1298 +VYR QGV I+DKH+EVIVRQMLR+ I+++G+++FL G VE S+ + NR + A G Sbjct: 1125 EVYRSQGVGIHDKHVEVIVRQMLRRVIIIDSGATEFLPGSPVERSQFEGENRRVVAEGGD 1184 Query: 1299 GATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIP 1358 A+ L+GITKASLATES++SAASFQETTR+LT AA+ G D+L GLKENVI+G+LIP Sbjct: 1185 PASGRPVLMGITKASLATESWLSAASFQETTRILTNAAIEGASDKLVGLKENVIIGKLIP 1244 Query: 1359 AGTGYAYHQDRMRRRAAGEAPAAPQVTAEDASASLAELLNAGLGGS 1404 AGTG +++ + AA + + D ++ G G + Sbjct: 1245 AGTGINRYRNIQVQPTEEARAAAYAIPSYDDGYYTPDVFGTGTGAA 1290 Score = 226 bits (576), Expect = 5e-57, Method: Composition-based stats. Identities = 115/301 (38%), Positives = 167/301 (55%), Gaps = 22/301 (7%) Query: 13 KTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLC 72 FD ++I LA+ D IR WS+GEVKKPETINYRT KPE+DGLFC +IFGP +D+EC C Sbjct: 3 DVNFFDELRIGLATADDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWECYC 62 Query: 73 GKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPL 132 GKYKR++ +G+ICE+CGVEVT+ KVRRERMGHIELA+ HIW+ K +PSR+G LLD+ Sbjct: 63 GKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAASVTHIWYFKGVPSRLGYLLDLAP 122 Query: 133 RDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSM 192 +D+E+++YF +YV+ + E + ++ D+ DA + A A Q L + Sbjct: 123 KDLEKIIYFAAYVITSVNTEMRHNEMSTLEAEIGVERKQIADQRDADLEARA-QKLEADL 181 Query: 193 -DLEQE-----CEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNK--PEWMILTVLPV 244 +LEQE + +E E R + + + L+ ++ K P +I L Sbjct: 182 AELEQEGAKSDVRRKVKEGGEREMRQLRDRAQRELDKLDEIWETFTKLEPRQLIADELL- 240 Query: 245 LPPDLRPLV-----PLDGGRFATSDLNDLYR--RVINRNNRLKRLLDLAAPDIIVRNEKR 297 R L GG A S + L + + ++L+ + +R KR Sbjct: 241 ----YRELYDRFGEYFTGGMGAES-IQALLQDFDINAEADQLRETIRSGKGQKKLRALKR 295 Query: 298 M 298 + Sbjct: 296 L 296 >UniRef50_D1Y777 DNA-directed RNA polymerase n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y777_9BACT Length = 1710 Score = 912 bits (2356), Expect = 0.0, Method: Composition-based stats. Identities = 422/978 (43%), Positives = 607/978 (62%), Gaps = 46/978 (4%) Query: 106 ELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQY 165 ++ S + H F + P R L+ V+ Y+VI+ G + I+ E + Sbjct: 298 QILSQSEHTLFQEKYPHRFTSQLESV------VVEDPCYLVIDEGESPFSESDIIIEREQ 351 Query: 166 LDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLE 225 + +F A +GAE ++ L +M+L ++LREEL+ET KR+K+ KR++++E Sbjct: 352 Y-LCSAYDPKFKAGIGAEGVREKLCAMNLNHLVQELREELSETTG-QKRRKIVKRLQVVE 409 Query: 226 AFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDL 285 F + P+ M+L VLPV+PPDLRP+V LDGGRFATSDLNDLYRRVINRNNRL +L +L Sbjct: 410 DFRKGDCAPQSMVLEVLPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLSKLKEL 469 Query: 286 AAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGK 345 AP+II+RNEKRMLQE+VDAL+DNGR G+A+ G+ RPLKSL D+++GK+GRFRQNLLGK Sbjct: 470 KAPEIIIRNEKRMLQESVDALIDNGRMGKAVLGAGNRPLKSLTDLLRGKKGRFRQNLLGK 529 Query: 346 RVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREE 405 RVDYSGRSVI +GP+LRL+QCGLPK+MALELFKPF+ K+ +G+AT +K K+M+ER Sbjct: 530 RVDYSGRSVIAIGPFLRLYQCGLPKQMALELFKPFVIQKMVEKGIATNVKNGKRMIERGN 589 Query: 406 AVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQ 465 +W IL+E+I++HPV+LNRAPTLHRLGIQAFEP+L+EGKAI+LHP+ C A+NADFDGDQ Sbjct: 590 EEIWGILEEIIKDHPVMLNRAPTLHRLGIQAFEPILMEGKAIRLHPMACTAFNADFDGDQ 649 Query: 466 MAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGM 525 MAVHVPL++EAQ EAR LM++ NN+LSPA+G+PI+ P+QD++LG+YY+T KGE Sbjct: 650 MAVHVPLSIEAQTEARMLMLAANNLLSPASGKPIVSPTQDILLGVYYITNMVSGLKGENT 709 Query: 526 VLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKD--------TTVGRA 577 + G ++ R+ +R K + + + D T+ GRA Sbjct: 710 YYDSLDDVMTALDHGAVHVNTRIYLRWDPEWKPLTKKGMEDSDFLDPKTRKWLITSPGRA 769 Query: 578 ILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGA 637 + + + L VN +GKK +S ML+ Y L V D I G+ +A SG Sbjct: 770 LFNLHLNPRLR--FVNFQMGKKDLSAMLDKAYDYLSHIEMVDTLDSIKNLGYHWACLSGL 827 Query: 638 SVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAM 697 S + +VIP +K ++++E+ I++Q++ G++T E + ++W+ A ++ ++ Sbjct: 828 SFQMQAIVIPPEKQQLVNESLDVDGRIRDQYEMGILTEDEYLRQKEELWSGAAGKIGDSI 887 Query: 698 MDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIET 757 MD++ N I MM +SGARGS Q+ Q+AG+RGLMA P G II+ Sbjct: 888 MDHMAVT---------------NPIRMMVESGARGSRGQLAQMAGIRGLMADPTGRIIDY 932 Query: 758 PITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTH 817 PIT NFREG+N+L+YFISTHGARKGLADTAL+TA SGYLTRRLVDVAQD++V E+DC T Sbjct: 933 PITTNFREGMNMLEYFISTHGARKGLADTALRTAKSGYLTRRLVDVAQDIIVLEEDCHTS 992 Query: 818 EGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSV 877 +GI + P+ G V PL +R+ GR + ED+ P + + +V +N L+ + EN Sbjct: 993 KGIKIEPMKSDGKVVIPLSERIAGRTSLEDIDHPVSGERIVSKNELISPDKAVEI-ENIR 1051 Query: 878 DAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHI 937 + + VRS +SC++ +G+C CYG DL+ ++N GEA+GV+AAQSIGEPGTQLTMRTFH Sbjct: 1052 EHIWVRSPLSCESPYGICRKCYGVDLSSRKMVNIGEAVGVVAAQSIGEPGTQLTMRTFHT 1111 Query: 938 GGA--ASRAAAESSIQVKNKGSIKLS-NVKSVVNSSGKLV-ITSRNTELKLIDEFGRT-- 991 GG + + +++ + V + +GK+ + + K+I E Sbjct: 1112 GGVRISGEDITQGLPRIEQLFEARRPKKVSYLAGLNGKVAEVRELEGKRKVIIEGTPNDS 1171 Query: 992 ----KESYKVPYGAVLAKGDGEQVAGGETVAN--WDPHTMPVITEVSGFVRFTDMIDGQT 1045 K +Y +P + +G++V + + DP + + ++ + Sbjct: 1172 DVVQKVTYSIPASQSILVEEGDEVKSDTLITDGYIDPQQLLEVEGQEAVQKYLVDSIQEV 1231 Query: 1046 ITRQTDELTGLSSLVVLD 1063 Q + V+L Sbjct: 1232 YRSQGVSINNKHIEVILR 1249 Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 94/184 (51%), Positives = 122/184 (66%), Gaps = 13/184 (7%) Query: 15 EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74 +E I++ LA+PD IR S GEVKKPETINYRT +PERDGLFC RIFGP K YEC CGK Sbjct: 3 KEIVGIRLRLATPDQIRELSHGEVKKPETINYRTLRPERDGLFCERIFGPTKSYECACGK 62 Query: 75 YKRL--KHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPL 132 YK+ K +GV+C++CGVEVT +VRRERMGHIELA+P HIW+L+ +PSR+ LLL P Sbjct: 63 YKKSGPKFKGVVCDRCGVEVTDNRVRRERMGHIELAAPVVHIWYLRGIPSRLSLLLGTPT 122 Query: 133 RDIERVLYF--------ESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEA 184 + +ERV+YF +VIEG +L + + E + + +F A+ EA Sbjct: 123 KMLERVVYFAPLRKREAAYKIVIEGKRPDLAAKDDVISESEMRVHAHYDPKFKAE---EA 179 Query: 185 IQAL 188 + L Sbjct: 180 YRIL 183 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 89/329 (27%), Positives = 153/329 (46%), Gaps = 29/329 (8%) Query: 981 ELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDM 1040 ++ +++E T + K+ K DG+ V +P+ ++G D+ Sbjct: 981 DIIVLEEDCHTSKGIKIEP----MKSDGKVV-------------IPLSERIAGRTSLEDI 1023 Query: 1041 IDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYF 1100 + R + +S ++ E +R L G G D+ ++ Sbjct: 1024 DHPVSGERIVSKNELISPDKAVE-IENIREHIWVRSPLSCESPYGICRKCYGVDLSSRKM 1082 Query: 1101 LPGKAIVQLEDGVQI-SSGDTLARIPQESGGT----KDITGGLPRVADLFEARRPKEPAI 1155 + V + I G L +GG +DIT GLPR+ LFEARRPK+ + Sbjct: 1083 VNIGEAVGVVAAQSIGEPGTQLTMRTFHTGGVRISGEDITQGLPRIEQLFEARRPKKVSY 1142 Query: 1156 LAEISGIVSFGKETKGKRRLVI----TPVDGSDPYEEMIPKWRQLNVFEGERVERGDVIS 1211 LA ++G V+ +E +GKR+++I D IP + + V EG+ V+ +I+ Sbjct: 1143 LAGLNGKVAEVRELEGKRKVIIEGTPNDSDVVQKVTYSIPASQSILVEEGDEVKSDTLIT 1202 Query: 1212 DGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM--LRKATIVNA 1269 DG P +L + G AV +Y+V+ +Q+VYR QGV IN+KHIEVI+R++ + + +++ Sbjct: 1203 DGYIDPQQLLEVEGQEAVQKYLVDSIQEVYRSQGVSINNKHIEVILRKVAPINRLRVIDE 1262 Query: 1270 GSSDFLEGEQVEYSRVKIANRELEANGKV 1298 G + + G+ V S V+ EL A + Sbjct: 1263 GDTSLVAGDLVWASDVQKEIDELTAENER 1291 Score = 102 bits (255), Expect = 8e-20, Method: Composition-based stats. Identities = 41/71 (57%), Positives = 51/71 (71%) Query: 1297 KVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRL 1356 +V + + GITKA+LATESF+SAASFQ+T ++L AAV + D L GLKENVI+G L Sbjct: 1605 RVPPLCKKFIHGITKAALATESFLSAASFQQTAQILAGAAVRSQVDHLMGLKENVIIGHL 1664 Query: 1357 IPAGTGYAYHQ 1367 IPAGTG Q Sbjct: 1665 IPAGTGIERFQ 1675 >UniRef50_C1TLI9 DNA-directed RNA polymerase n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TLI9_9BACT Length = 1180 Score = 912 bits (2356), Expect = 0.0, Method: Composition-based stats. Identities = 417/899 (46%), Positives = 582/899 (64%), Gaps = 41/899 (4%) Query: 115 WFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQ-ILTEEQYLDALEEFG 173 F + P R L+ V+ ++VI G + + IL EQYL + Sbjct: 288 LFQERYPERFTAQLETV------VVEDPCFLVINGSESPFDDGDVILDREQYL--CSHYD 339 Query: 174 DEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNK 233 +F A +GAE ++ +L ++D++ +QLREEL+ET S KR+KL KR++++E F + Sbjct: 340 KKFRAGIGAEGVREMLDTLDMDHLAQQLREELSET-SGQKRRKLVKRLQVVEDFRKGDCN 398 Query: 234 PEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVR 293 P+ M+L VLPV+PPDLRP+V LDGGRFATSDLNDLYRRVINRNNRL++L +L AP+IIVR Sbjct: 399 PQSMVLEVLPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLRKLQELRAPEIIVR 458 Query: 294 NEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRS 353 NEKRMLQE+VDAL+DNGR G+A+ G+ RPLKSL+D+++GK+GRFRQNLLGKRVDYSGRS Sbjct: 459 NEKRMLQESVDALIDNGRMGKAVLGAGNRPLKSLSDLLRGKKGRFRQNLLGKRVDYSGRS 518 Query: 354 VITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILD 413 VIT+GP L+++QCGLPK+MALELFKPF+ KL G+A +K+ K+M+ER + +W IL+ Sbjct: 519 VITIGPNLKIYQCGLPKQMALELFKPFVIQKLVDLGIAPNVKSGKRMIERGKEEIWAILE 578 Query: 414 EVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLT 473 E+I++HPV+LNRAPTLHRLGIQAFEPVL+EGKAI+LHPLVC A+NADFDGDQMAVHVPL+ Sbjct: 579 EIIKDHPVMLNRAPTLHRLGIQAFEPVLMEGKAIRLHPLVCTAFNADFDGDQMAVHVPLS 638 Query: 474 LEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEA 533 +EAQ EAR LM+S NNILSPA+G+PI+ PSQD++LG+YY+T GEG + Sbjct: 639 VEAQAEARMLMLSANNILSPASGKPIVAPSQDIILGIYYLTNLREGMTGEGKYFDSFDDV 698 Query: 534 ERLYRSGLASLHARVKVRITEYEKDANGELVAK--------TSLKDTTVGRAILWMIVPK 585 G+ ++AR+++R + ++ +T+ GR + +PK Sbjct: 699 LTALDHGIVHVNARIRMRWNHEWGNWKDKVDQWGVSFLDESGKWFETSPGRVLFNSYLPK 758 Query: 586 GLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMV 645 L ++ LGKK +S++L+ Y + + V D I G+ +A SG S + D+V Sbjct: 759 KLR--FLDGQLGKKDLSRLLDLGYNEVSRQEMVEMLDSIKGLGYHWATLSGISFCVTDVV 816 Query: 646 IPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTET 705 IP++K +++S + E EI+ Q+ G+++ E + +W+ A V A+++++ + Sbjct: 817 IPKEKEDVVSTSLVEDDEIRNQYDMGVLSEDEYLLQKETLWSKAAADVGNAILNHMGHD- 875 Query: 706 VINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFRE 765 N + MM DSGARGS Q+ Q+AG+RGLMA P G II+ PIT NFRE Sbjct: 876 --------------NPVRMMVDSGARGSRGQLAQMAGIRGLMADPTGRIIDYPITTNFRE 921 Query: 766 GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPV 825 G+N+L+YFISTHGARKGLADTAL+TA SGYLTRRLVDV+QD+++TEDDCGT +G+ + P+ Sbjct: 922 GMNMLEYFISTHGARKGLADTALRTAKSGYLTRRLVDVSQDVIITEDDCGTEKGVKIEPL 981 Query: 826 IEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSV 885 G P+ +R+ GR + DV P T D++V ++ ++ + VRS Sbjct: 982 ESDGKTVIPISERIAGRTSLNDVNDPETGDLIVGAGEIITPDLASRIDSCGFKEIWVRSP 1041 Query: 886 VSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGA--ASR 943 ++C T G+C CYG DLA +++ GEA+GV+AAQSIGEPGTQLTMRTFH GG Sbjct: 1042 MTCTTRHGICQKCYGVDLATRSVVDIGEAVGVVAAQSIGEPGTQLTMRTFHTGGVRITGE 1101 Query: 944 AAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSR----NTELKLIDEFGRTKESYKVP 998 + +++ + SV+ VI R ++ + T P Sbjct: 1102 DITQGLPRIEQLFEARRPKKVSVLAGVDGKVIEIREMEGKRKVIITPRSPGTNRRSPTP 1160 Score = 203 bits (515), Expect = 6e-50, Method: Composition-based stats. Identities = 88/175 (50%), Positives = 117/175 (66%), Gaps = 10/175 (5%) Query: 15 EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74 E +++ LASP IR S GEVKKPETINYRT +PE+DGLFC RIFGP K +EC CGK Sbjct: 4 REIVGVRVRLASPGEIRGLSTGEVKKPETINYRTLRPEKDGLFCERIFGPTKSFECACGK 63 Query: 75 YKRL--KHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPL 132 YK+ K +GVIC++CGVEVT +VRRERMGHIELA+P HIW+L+ +PSR+ LLL Sbjct: 64 YKKSGPKFKGVICDRCGVEVTDNRVRRERMGHIELAAPVVHIWYLRGIPSRLSLLLGTAT 123 Query: 133 RDIERVLYF--------ESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAK 179 + +E+V+YF VVIEG ++L ++ + E + + +F A+ Sbjct: 124 KMLEKVVYFAPIRKREPAFKVVIEGKRSDLAKRGDIVSESEVRLHCHYDPKFKAE 178 Score = 94.4 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 50/180 (27%), Positives = 80/180 (44%), Gaps = 13/180 (7%) Query: 1025 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAER--TAGGKDL--RPALKI 1080 +P+ ++G D+ D +T D + G ++ D A R + G K++ R + Sbjct: 989 IPISERIAGRTSLNDVNDPET----GDLIVGAGEIITPDLASRIDSCGFKEIWVRSPMTC 1044 Query: 1081 VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDTLARIPQESGGT----KDIT 1135 G G D+ + + V + I G L +GG +DIT Sbjct: 1045 TTRHGICQKCYGVDLATRSVVDIGEAVGVVAAQSIGEPGTQLTMRTFHTGGVRITGEDIT 1104 Query: 1136 GGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQ 1195 GLPR+ LFEARRPK+ ++LA + G V +E +GKR+++ITP P R+ Sbjct: 1105 QGLPRIEQLFEARRPKKVSVLAGVDGKVIEIREMEGKRKVIITPRSPGTNRRSPTPSLRR 1164 >UniRef50_A8LC63 DNA-directed RNA polymerase subunit beta' n=26 Tax=Bacteria RepID=RPOC_FRASN Length = 1296 Score = 909 bits (2348), Expect = 0.0, Method: Composition-based stats. Identities = 447/965 (46%), Positives = 594/965 (61%), Gaps = 43/965 (4%) Query: 161 TEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKR 220 E + + + FG F+ MGAEA+Q L DL E E LRE + K+ + KR Sbjct: 237 DELLFRELRDRFGQYFEGGMGAEALQHRLADFDLAAEAESLRETIRSGKG-QKKARALKR 295 Query: 221 IKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLK 280 +K++ AF+ + N P M+L +PV+PPDLRP+V LDGGRFATSDLNDLYRRVINRNNRLK Sbjct: 296 LKVVSAFLNTRNSPMGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLK 355 Query: 281 RLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQ 340 RLLDL AP+IIV NEKRMLQEAVDAL DNGRRGR +TG RPLKSL+DM+KGKQGRFRQ Sbjct: 356 RLLDLGAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQ 415 Query: 341 NLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKM 400 NLLGKRVDYSGRSVI VGP L+LHQCGLPK+MALELFKPF+ +L A IK+AK+M Sbjct: 416 NLLGKRVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRM 475 Query: 401 VEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNAD 460 VER VVWD+L+EVI EHPVLLNRAPTLHRLGIQAFEP L+EGKAIQ+HPLVC A+NAD Sbjct: 476 VERARPVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNAD 535 Query: 461 FDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNA 520 FDGDQMAVH+PL+ EAQ EAR LM+S+NNILSPA+G P+ +PS D+V G+++++R A Sbjct: 536 FDGDQMAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPSLDMVTGVFHLSRVSEGA 595 Query: 521 KGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDAN-----GELVAKTSLKDTTVG 575 GEG + EA+ + + L AR++VR+ E A L +TT G Sbjct: 596 IGEGRFFSSVAEAQMAFDAREIHLQARIQVRLRESTPPAEWAPPADWLPGDPFTLETTFG 655 Query: 576 RAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARS 635 R +L +P+G P +N L KKA + ++N D + GF +A RS Sbjct: 656 RCLLNEALPEGYP--FINAQLNKKAQAAIVNDLAERYPKIQVAATLDALKSAGFYWATRS 713 Query: 636 GASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSK 695 G +V I+D+V P K +I+ E E +++QF G ++ ER ++++ IW A +++++ Sbjct: 714 GVTVAIEDVVAPPNKAQILDEYEQRAERVEKQFGRGFLSDEERRSELVQIWTEATNKIAE 773 Query: 696 AMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSII 755 AM N N +Y + +SGA G+ QIRQLAGMRGL++ P G II Sbjct: 774 AMEANFPET---------------NPVYTLVNSGAAGNMMQIRQLAGMRGLVSNPKGEII 818 Query: 756 ETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCG 815 PI ANFREGL V++YFISTHGARKGLADTAL+TA+SGYLTRRLVDV+QD++V E+DCG Sbjct: 819 PRPIKANFREGLTVVEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREEDCG 878 Query: 816 THEGIMMTPVIEGGDVK----EPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDL 871 T GI+ +G D R A D + +++VP + Sbjct: 879 TERGILTRIARKGPDGVLVRDRYAETSAYARSLASDAVD-AQGEVVVPAGADAGDVVIGQ 937 Query: 872 LEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLT 931 + E +++V+VRS ++C++ GVCAHCYGR LA G +++ GEA+G++AAQSIGEPGTQLT Sbjct: 938 IIEAGIESVRVRSALTCESRMGVCAHCYGRSLATGKLVDVGEAVGIVAAQSIGEPGTQLT 997 Query: 932 MRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSG---KLVITSRNTELKLIDEF 988 MRTFH GG A + +V + K+ ++ K+ T + ++ ++ + Sbjct: 998 MRTFHSGGVAGDDITQGLPRVVELFEARSPKGKAPISEVTGRVKIEETEKTFKVVIVPDD 1057 Query: 989 GRTKESYKVPYGAVLAKGDGEQVAGGETV--ANWDPHTMPVITE-VSGFVRFTDMI---- 1041 G + +Y V + L +GE+V G + DPH + I + D + Sbjct: 1058 GSEEIAYPVSRRSRLRVREGERVEVGAQLIDGAVDPHEVLRILGPRQVQLHLVDQVQEVY 1117 Query: 1042 --DGQTITRQTDELT---GLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMP 1096 G +I + E+ L + VL+S E T +L + V I G Sbjct: 1118 RSQGVSIHDKHIEIIIRQMLKRVNVLESGETTLLPGELVERARFEGENRRVVEIGGQPAS 1177 Query: 1097 AQYFL 1101 A+ L Sbjct: 1178 ARPVL 1182 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 138/334 (41%), Positives = 192/334 (57%), Gaps = 5/334 (1%) Query: 1075 RPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDTLARIPQESGGTK- 1132 R AL G G + + V + I G L SGG Sbjct: 949 RSALTCESRMGVCAHCYGRSLATGKLVDVGEAVGIVAAQSIGEPGTQLTMRTFHSGGVAG 1008 Query: 1133 -DITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIP 1191 DIT GLPRV +LFEAR PK A ++E++G V +ET+ ++VI P DGS+ + Sbjct: 1009 DDITQGLPRVVELFEARSPKGKAPISEVTGRVKI-EETEKTFKVVIVPDDGSEEIAYPVS 1067 Query: 1192 KWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDK 1251 + +L V EGERVE G + DG PH++LR+ G V ++V++VQ+VYR QGV I+DK Sbjct: 1068 RRSRLRVREGERVEVGAQLIDGAVDPHEVLRILGPRQVQLHLVDQVQEVYRSQGVSIHDK 1127 Query: 1252 HIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITK 1311 HIE+I+RQML++ ++ +G + L GE VE +R + NR + G A+ L+GITK Sbjct: 1128 HIEIIIRQMLKRVNVLESGETTLLPGELVERARFEGENRRVVEIGGQPASARPVLMGITK 1187 Query: 1312 ASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMR 1371 ASLATES++SAASFQETTRVLT+AA+ + D L GLKENVI+G+LIPAGTG + +++ Sbjct: 1188 ASLATESWLSAASFQETTRVLTDAAINARSDSLVGLKENVIIGKLIPAGTGISRYRNIRV 1247 Query: 1372 RRAAGEAPAAPQVTAEDASASLA-ELLNAGLGGS 1404 A V+ + AS+ AG G + Sbjct: 1248 EPTDEARAAMYSVSGYEDGASVEYGAFGAGSGQA 1281 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 112/320 (35%), Positives = 170/320 (53%), Gaps = 26/320 (8%) Query: 13 KTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLC 72 FD ++I LA+ D IR WSFGEVKKPETINYRT KPE+DGLFC +IFGP +D+EC C Sbjct: 3 DVNFFDELRIGLATADDIRQWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWECYC 62 Query: 73 GKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPL 132 GKYKR++ +G+ICE+CGVEVT+ KVRRERMGHIELA+P HIW+ K +PSR+G LLD+ Sbjct: 63 GKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDLAP 122 Query: 133 RDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSM 192 +D+E+V+YF +Y++ + + + R E + ++ D+ +A + E Q L+ Sbjct: 123 KDLEKVIYFAAYMITKVDIDSRHRDLPTLEARIGVEKQQLEDKKNADV--ETRQRKLEED 180 Query: 193 DLEQECEQLREELNETNSETK-----------RKKLTKRIKLLEAFVQSGNK---PEWMI 238 + E E + + E+ ++K+ ++ + F + P+ ++ Sbjct: 181 LAQLEAEGAKGDARRKVRESAEREMRQIRDRSQRKIDDLDRVFDRFKNMKVQDLEPDELL 240 Query: 239 LTVLPVLPPDLRPLVPLDGGRFATSDLNDLYR--RVINRNNRLKRLLDLAAPDIIVRNEK 296 L R +GG A + L + L+ + R K Sbjct: 241 FREL-----RDRFGQYFEGGMGAEA-LQHRLADFDLAAEAESLRETIRSGKGQKKARALK 294 Query: 297 RMLQEAVDALLDNGRRGRAI 316 R+ + V A L+ + Sbjct: 295 RL--KVVSAFLNTRNSPMGM 312 >UniRef50_B1AIH6 DNA-directed RNA polymerase subunit beta' n=15 Tax=Ureaplasma RepID=RPOC_UREP2 Length = 1305 Score = 903 bits (2333), Expect = 0.0, Method: Composition-based stats. Identities = 435/1243 (34%), Positives = 676/1243 (54%), Gaps = 164/1243 (13%) Query: 15 EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74 + ++ I++ASP+ I +WS GE+ KPETINY++ KPE +GLF IFGP KDYEC CGK Sbjct: 4 KGIKSLTISIASPEQILNWSKGEITKPETINYKSLKPEPNGLFDESIFGPSKDYECYCGK 63 Query: 75 YKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPS--RIGLLLDMPL 132 Y+++KH+G ICE+C VE+T++ VRRERMGHIELA+P AHIWF K LPS +I LLLD+ Sbjct: 64 YRKVKHKGKICERCHVEITESIVRRERMGHIELAAPVAHIWFTKELPSPSKISLLLDITY 123 Query: 133 RDIERVLYFESYVVIEG------GMTNLERQQILT------------------------- 161 +++++V+YF +Y+V++ G + ++++L Sbjct: 124 KEVDQVVYFVNYIVLDEGNNVYDGKSIFNKKEVLDLTSPKNSIRSRNKLRRTLRNIQERI 183 Query: 162 EEQYLDALEEFGDEFDA----------------------------------KMGAEAIQA 187 E++ E +FD +GAEAI+ Sbjct: 184 EDELNHEREALIQDFDYRLAVTYDQMLKDSNIPFSVKDVMAFIEKHTGVRFGIGAEAIRE 243 Query: 188 LLKSMDLEQECEQLREELNETNS--ETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVL 245 LL+ ++LE+E E++++ + + + + K K+L +R++ + SG+KPEWM++T +PV Sbjct: 244 LLEKLNLEEEHEKIKQAIQNSPNAYDQKTKRLLRRLECVRWIKDSGSKPEWMVMTRIPVT 303 Query: 246 PPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDA 305 P + RP++ LDGGRF TSD N+ YR++I RN RLK++ AP+I++ NEKR+LQEAVD+ Sbjct: 304 PSETRPIISLDGGRFTTSDTNNFYRKIIIRNERLKQMQATDAPEILLDNEKRLLQEAVDS 363 Query: 306 LLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQ 365 L DN R + + G +KRPLKSL++ +KGKQG FRQNLLGKRVDYSGRSVI VGP L++++ Sbjct: 364 LFDNNSRKKPVVGKDKRPLKSLSNHLKGKQGLFRQNLLGKRVDYSGRSVIVVGPELKMYE 423 Query: 366 CGLPKKMALELFKPFIYGKL---------ELRGLATTIKAAKKMVEREEAVVWDILDEVI 416 G+P M L+LF+P+I +L E++ + IK A++ + ++ +W ++++VI Sbjct: 424 VGIPALMILKLFRPYIISELIRKRDELGNEIQPICANIKLAEQKILAQDNEIWPVVEKVI 483 Query: 417 REHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEA 476 ++ PV+LNRAPTLHRLGIQAFEP +++GKAI+LHPLV A+NADFDGDQMAVH+PL+ EA Sbjct: 484 KQRPVILNRAPTLHRLGIQAFEPKMVDGKAIRLHPLVTTAFNADFDGDQMAVHIPLSKEA 543 Query: 477 QLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGM----------- 525 EAR++++++ +IL P +G+PII P+QD++LG+YY+T++ E M Sbjct: 544 VAEARSILLASWHILGPKDGKPIITPTQDMILGIYYLTKEKFPQVIEEMMAKDPTQARVE 603 Query: 526 ------VLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAIL 579 + + EA R Y+ ++ + + K N + +K + TTVG+ I Sbjct: 604 FINNFHIFSTQDEAIRAYKLKTIRINDVIGI----TTKAFNNKTFSKEGILVTTVGKIIF 659 Query: 580 WMIVP----------------------------KGLPYSIVNQALGKKAISKMLNTCYRI 611 P L + + L KK +S +++ Y++ Sbjct: 660 NQAFPVNFPYINDVKNLYGENQFEIIGMHESILDYLKAYNLKEPLTKKTLSTVIDYLYKV 719 Query: 612 LGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSG 671 ++ D+I GF Y+ S S+ D+ ++K+E E + V++++E + G Sbjct: 720 SEIEVVPQTMDKIKALGFKYSMISATSISAFDIPSYDQKYEYFKETDELVSKLREFYLDG 779 Query: 672 LVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGAR 731 +T ERY KV+ W+ D+V+ + + + + N I +MA SGAR Sbjct: 780 KLTDDERYTKVVQAWSQTKDKVTHDIEKLINSN-----------EYKDNPIVIMAKSGAR 828 Query: 732 GSAAQIRQLAGMRGLMAKPD-----------GSIIETPITANFREGLNVLQYFISTHGAR 780 G+ + QLAGMRGLM+K IE PI +F EGL+V +YF S+ GAR Sbjct: 829 GNTSNFTQLAGMRGLMSKSYNYDQKNNNGVIKDTIEIPIKHSFIEGLSVSEYFNSSFGAR 888 Query: 781 KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGD--VKEPLRDR 838 KG+ DTA+KTA SGY+TR+LVD Q +V+ + DCGT EGI++ + D E L+DR Sbjct: 889 KGMTDTAMKTAKSGYMTRKLVDSTQAVVIKDHDCGTKEGIIVREIRNTKDNTSIESLKDR 948 Query: 839 VLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHC 898 ++GR + + +++ + L+ + ++++ + + V+VRS + C + +GVC C Sbjct: 949 IVGRYSINTIYDTKN-KLIIESDKLITSEIANIIQNSGIREVEVRSPLHCASLYGVCQKC 1007 Query: 899 YGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAES---SIQVKNK 955 +G DL+ +I G AIGVIAAQSIGEPGTQLTMRTFH GG A I+ Sbjct: 1008 FGLDLSTNKLIETGTAIGVIAAQSIGEPGTQLTMRTFHTGGVAGDTNITQGFERIKQLFD 1067 Query: 956 GSIKLSNVKSVVNSSGKLVITSR-----NTELKLIDEFGRTKESYKVPYGAVLAKGDGEQ 1010 N K+V++ V N +I +Y AVL G++ Sbjct: 1068 CIQPQENEKAVISQVKGTVERIEKDSNTNGYNVVIKYNKDNYVNYPTRSNAVLRVKTGDE 1127 Query: 1011 VAGGETV--ANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERT 1068 + G+ + + D + + + + + Q E++ V++ Sbjct: 1128 IIAGQKITEGSIDVNDLLKYAGIENVRHYIIKEVQKVYRMQGIEISDKYIEVIISQLTNK 1187 Query: 1069 AGGKDLRPALKIVDA--QGNDVLIPGTDMPAQYFLPGKAIVQL 1109 + + V N+ +M P AI Q+ Sbjct: 1188 ITITNPGDSGLFVGETISINEFTEVAQNMLVNKKKPPSAINQV 1230 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 93/298 (31%), Positives = 146/298 (48%), Gaps = 7/298 (2%) Query: 1073 DLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDTLARIPQESGGT 1131 ++R L G G D+ + + + I G L +GG Sbjct: 990 EVRSPLHCASLYGVCQKCFGLDLSTNKLIETGTAIGVIAAQSIGEPGTQLTMRTFHTGGV 1049 Query: 1132 K---DITGGLPRVADLFEARRP--KEPAILAEISGIVS-FGKETKGKRRLVITPVDGSDP 1185 +IT G R+ LF+ +P E A+++++ G V K++ V+ + + Sbjct: 1050 AGDTNITQGFERIKQLFDCIQPQENEKAVISQVKGTVERIEKDSNTNGYNVVIKYNKDNY 1109 Query: 1186 YEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQG 1245 L V G+ + G I++G +D+L+ G+ V YI+ EVQ VYR+QG Sbjct: 1110 VNYPTRSNAVLRVKTGDEIIAGQKITEGSIDVNDLLKYAGIENVRHYIIKEVQKVYRMQG 1169 Query: 1246 VKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRD 1305 ++I+DK+IEVI+ Q+ K TI N G S GE + + + + N K + Sbjct: 1170 IEISDKYIEVIISQLTNKITITNPGDSGLFVGETISINEFTEVAQNMLVNKKKPPSAINQ 1229 Query: 1306 LLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGY 1363 + G+ A + SF+SAASFQ+T ++LT+AA ++D L GLKENVI+G LIPAGTG Sbjct: 1230 VFGLDHAPSKSGSFLSAASFQDTKKILTDAAARSQKDMLIGLKENVILGNLIPAGTGL 1287 >UniRef50_Q1AU23 DNA-directed RNA polymerase subunit beta' n=11 Tax=Bacteria RepID=RPOC_RUBXD Length = 1295 Score = 898 bits (2321), Expect = 0.0, Method: Composition-based stats. Identities = 442/912 (48%), Positives = 569/912 (62%), Gaps = 61/912 (6%) Query: 148 EGGMTNLERQQILTEEQYLDALEEFGDE------FDAKMGAEAIQALLKSMDLEQECEQL 201 E T RQ + EE + + + FGDE F MGAEAI+ L++ +DLE+E +L Sbjct: 245 EEFQTLEPRQIVDDEELFREMKDRFGDEYGYGVYFRGGMGAEAIRDLIRQVDLEKEAREL 304 Query: 202 REELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFA 261 R+ + E+ KR+K KR+K+++AF SGNKPEWMIL +PVLPPDLRP+V LDGGRFA Sbjct: 305 RQVVGESRG-QKRQKAIKRLKVVDAFRTSGNKPEWMILDAIPVLPPDLRPMVQLDGGRFA 363 Query: 262 TSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNK 321 TSDLNDLYRRVINRNNRLKRLLDL APD+IV NEKRMLQEAVDAL DNGRRGRA+TG+ Sbjct: 364 TSDLNDLYRRVINRNNRLKRLLDLGAPDVIVNNEKRMLQEAVDALFDNGRRGRAVTGAGN 423 Query: 322 RPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFI 381 RPLKSL+DM+KGKQGRFRQNLLGKRVDYSGRSVI VGP L +HQCGLP+ MA+ELFKPF+ Sbjct: 424 RPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPQLEMHQCGLPRLMAVELFKPFV 483 Query: 382 YGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVL 441 L R LA I++AK+MVER VWD+L++VI+EHPVLLNRAPTLHRLGIQAFEPVL Sbjct: 484 MKVLVDRALAPNIRSAKQMVERLRPEVWDVLEDVIKEHPVLLNRAPTLHRLGIQAFEPVL 543 Query: 442 IEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIV 501 +EGKAIQ+HPLVCAA+NADFDGDQMAVHVPL+ EAQ EAR LM+ST NIL PA+G P+ V Sbjct: 544 VEGKAIQIHPLVCAAFNADFDGDQMAVHVPLSPEAQAEARILMLSTQNILKPADGFPVAV 603 Query: 502 PSQDVVLGLYYMTR--DCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDA 559 PSQD+VLGLYY+T + + +L EA+ YR G LH +V +R Sbjct: 604 PSQDMVLGLYYITYAGEDFEEREPKALLASYAEADNAYREGSLRLHDKVILR-------- 655 Query: 560 NGELVAKTSLKDTTVGRAILWMIVPKGLP-----------YSIVNQALGKKAISKMLNTC 608 + +TT+GR + + + L Y VN L K I +++ Sbjct: 656 -----REGERIETTLGRVLFNESIERTLRGYLGDAYNPAAYRFVNHELKKGEIKQLVQQY 710 Query: 609 YRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQF 668 + D + + GF A +G S+G +D+V+PE+K EI+ + E V E++EQ+ Sbjct: 711 VERYPTELVSQLLDTLKHVGFHTATLAGISIGKNDIVVPEQKREILEKYEKLVEEVEEQW 770 Query: 669 QSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADS 728 ++G ++ ER +VI +W A + V +AM NL N IYMMA+S Sbjct: 771 EAGFISDEERAERVIGLWTQAKNEVEEAMKANL---------------WKLNPIYMMANS 815 Query: 729 GARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTAL 788 GARGS +QI QLAGMRGLM G II+ P+ +NF EGL VL+YF STHGARKG ADTAL Sbjct: 816 GARGSYSQITQLAGMRGLMTNAKGEIIDEPVKSNFMEGLTVLEYFTSTHGARKGQADTAL 875 Query: 789 KTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDV 848 +TA+SGYLTRRLVDVAQD+V+ E+DCGT I + + D + D V R A D+ Sbjct: 876 RTADSGYLTRRLVDVAQDVVIREEDCGTDGYIELP--LYLEDGQGDPNDSVAARYLARDL 933 Query: 849 LKPGTADILVPRNTLLHEQWCDLLEENSVDAVK--VRSVVSCDTDFGVCAHCYGRDLARG 906 + P T +++ T + + E K VR+ C+ GVC CYGR LA Sbjct: 934 VNPETGEVVAEAGTDITRPLFEAWLEELPRETKVPVRTPTKCENPHGVCQKCYGRSLATN 993 Query: 907 HIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAAS-RAAAESSIQVKNKGSIKLSNVKS 965 ++ GEA+G+IAAQSIGEPGTQLTMRTFH GG + +V + ++ Sbjct: 994 RPVDVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVSGVEDITAGLPRVVELFEARHPKGEA 1053 Query: 966 VVNSSGKLVITSRNTELKLID-----EFGRTKESYKVPYGAVLA--KGDGEQVAGGETVA 1018 V++ +V +L+ G Y+V +L DG ++ + Sbjct: 1054 VISDIDGIVSLEETDSERLVRVVVTAPDGSEAREYRVE-RQLLRPEIVDGAEIRANTPIT 1112 Query: 1019 NWDPHTMPVITE 1030 + ++ Sbjct: 1113 EGSLYPHQILEN 1124 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 130/343 (37%), Positives = 181/343 (52%), Gaps = 13/343 (3%) Query: 1038 TDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDL--RPALKIVDAQGNDVLIPGTDM 1095 D+++ +T + T ++ + E + R K + G G + Sbjct: 931 RDLVNPETGEVVAEAGTDITRPLFEAWLEELPRETKVPVRTPTKCENPHGVCQKCYGRSL 990 Query: 1096 PAQYFLPGKAIVQLEDGVQI-SSGDTLARIPQES---GGTKDITGGLPRVADLFEARRPK 1151 + V + I G L + G +DIT GLPRV +LFEAR PK Sbjct: 991 ATNRPVDVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVSGVEDITAGLPRVVELFEARHPK 1050 Query: 1152 EPAILAEISGIVSFGKETKGKR-RLVITPVDGSDPYEEMI-PKWRQLNVFEGERVERGDV 1209 A++++I GIVS + + R+V+T DGS+ E + + + + +G + Sbjct: 1051 GEAVISDIDGIVSLEETDSERLVRVVVTAPDGSEAREYRVERQLLRPEIVDGAEIRANTP 1110 Query: 1210 ISDGPEAPHDILRL-----RGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 1264 I++G PH IL RG A RY+V+EVQ VYR QGV I+DKHIE+IVRQMLRK Sbjct: 1111 ITEGSLYPHQILENDLRYGRGTTATERYLVDEVQKVYRAQGVDIHDKHIEIIVRQMLRKV 1170 Query: 1265 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS 1324 + G + FL + + V N +E G A + L+GITKASLATESF+SAAS Sbjct: 1171 LVEEPGDTRFLPEQVADRFSVLAENERVEEEGGRPAEFHTILMGITKASLATESFLSAAS 1230 Query: 1325 FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQ 1367 FQET RVLT+AA+ GK D L GLKENVI+G+LIPA TG ++ Sbjct: 1231 FQETARVLTDAAIEGKVDNLTGLKENVIIGKLIPAATGLPKYR 1273 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 93/178 (52%), Positives = 126/178 (70%), Gaps = 4/178 (2%) Query: 5 LKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGP 64 ++ L+ + I I LAS D IR WS GEV KPETINYRT +PE+DGLF RIFGP Sbjct: 1 MQALERDIDINRLEKISIGLASADEIREWSRGEVTKPETINYRTLRPEKDGLFDERIFGP 60 Query: 65 VKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRI 124 KD+EC CGKYKR++ +G+ICE+CGVEVT+ +VRR+RMGHIELA+P AH+WF+K +PSR+ Sbjct: 61 TKDWECYCGKYKRIRFKGIICERCGVEVTRARVRRDRMGHIELAAPVAHVWFVKGVPSRM 120 Query: 125 GLLLDMPLRDIERVLYFESYVVI----EGGMTNLERQQILTEEQYLDALEEFGDEFDA 178 G LLD+ +D++RVLYF S +V EG +++R + EE+ ++ +E A Sbjct: 121 GYLLDISPKDLDRVLYFASSIVTWVDREGRANDIDRLRQQVEEEIRQIEQDRDEEITA 178 >UniRef50_A9B6J1 DNA-directed RNA polymerase subunit beta' n=3 Tax=Bacteria RepID=RPOC_HERA2 Length = 1543 Score = 895 bits (2312), Expect = 0.0, Method: Composition-based stats. Identities = 448/1063 (42%), Positives = 626/1063 (58%), Gaps = 100/1063 (9%) Query: 152 TNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSE 211 +++ +I++E +Y + F A MGA A++ ++ +DL++ Q++ E+ + S Sbjct: 320 DDIQLHRIISENEYRILRDLAPYTFKADMGAGAVRDIVSMVDLDELSNQMQAEVQSS-SG 378 Query: 212 TKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRR 271 +RKK TKR++++EAF +SGN+PEWMI+TVLPV+PPDLRP+V LDGGRFATSDLNDLYRR Sbjct: 379 QRRKKATKRLRVVEAFRKSGNRPEWMIMTVLPVIPPDLRPMVQLDGGRFATSDLNDLYRR 438 Query: 272 VINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMI 331 VINRNNRLKRL++L AP+IIVRNEKRMLQEAVDAL+DNGRRGR ++G K LKSL+DM+ Sbjct: 439 VINRNNRLKRLMELNAPEIIVRNEKRMLQEAVDALIDNGRRGRPVSGKGKHRLKSLSDML 498 Query: 332 KGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLA 391 KGKQGRFRQNLLGKRVDYSGRSVI VGP L+LHQCGLPKKMALELFKPF+ +L +G A Sbjct: 499 KGKQGRFRQNLLGKRVDYSGRSVIVVGPTLQLHQCGLPKKMALELFKPFVMRRLVDKGFA 558 Query: 392 TTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHP 451 IK+AK+ VER VWD+L+EVI+++ VLLNRAP+LHRL IQAFE LIEG AIQLHP Sbjct: 559 HNIKSAKRFVERVRPEVWDVLEEVIKDYLVLLNRAPSLHRLSIQAFEAKLIEGSAIQLHP 618 Query: 452 LVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLY 511 LVCAA+NADFDGDQMAVHVPL+ +AQ EAR M+ST N+LSPA G+PII PSQD+VLG + Sbjct: 619 LVCAAFNADFDGDQMAVHVPLSRKAQEEARRRMISTYNLLSPATGDPIITPSQDIVLGCF 678 Query: 512 YMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEY---------EKDANGE 562 Y+T+ AKG G EA Y +G+ + A V + I +Y ++ + + Sbjct: 679 YLTQVRPGAKGGGKRFGSIDEALLAYTNGVVHIQAPVWIVIEDYILPGSDLREKELPSLD 738 Query: 563 LVAKTSLKDTTVGRAILWMIVPKGLPY-----------SIVNQALGKKAISKMLNTCY-- 609 V L +T+VGR I + N +GK + ++ CY Sbjct: 739 GVTPRVLIETSVGRIIFNNALRYQGEPKAGENGYRSPLHYRNFLVGKSGLKALIADCYRF 798 Query: 610 -----------------------------RILGLKPTVIFADQIMYTGFAYAARSGASVG 640 R + T AD+I GF +A G + Sbjct: 799 HSQRENIIADVYQELIERFGPETSEESLLRFYASERTARLADRIKALGFKHATLGGMTFS 858 Query: 641 IDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDN 700 D+ +P+ K I+ E +V +I++ + GL+T ERY +V+ W A +++ + + Sbjct: 859 ASDVEVPDTKDAIVQETYKKVQDIEKMQRRGLITDDERYREVVTAWLDATNQIKVEVQRS 918 Query: 701 LQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIT 760 L F + MM+ SGARG+ QIRQ+AGMRGL P G IIE PIT Sbjct: 919 LN---------------PFGPVSMMSTSGARGNVEQIRQMAGMRGLTTDPTGRIIELPIT 963 Query: 761 ANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGI 820 ANFREGL+V++YFISTHG RKGLADTAL+TA++GYLTRRLVDVAQD++VT +DCGT EG+ Sbjct: 964 ANFREGLSVIEYFISTHGGRKGLADTALRTADAGYLTRRLVDVAQDVIVTIEDCGTTEGM 1023 Query: 821 MMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLL----HEQWCDLLEENS 876 + D+ + DR++GRVT V P T +++ ++ + + ++L+ Sbjct: 1024 WIRV---SRDILASVEDRIVGRVTVAPVTNPVTGEVIFDTDSEILEDDGKHIANVLKSLD 1080 Query: 877 VDAV-----KVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLT 931 +A VRSV++C+ D+G+C CYGR+LA G ++ GEA+G+IAAQSIGEPGTQLT Sbjct: 1081 KEAQAEFGIYVRSVLTCNADYGICRKCYGRNLATGKMVEIGEAVGIIAAQSIGEPGTQLT 1140 Query: 932 MRTFHIGGAAS-RAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTE----LKLID 986 +RTFH GG A+ + +V+ ++ K+V+ V R E L+++ Sbjct: 1141 LRTFHTGGVATDTDITQGLPRVQEIFEARIPKGKAVLAQIAGRVQIVREEEGIRRLRIVS 1200 Query: 987 EFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTM---PVITEVSGFVRFTD--MI 1041 E T E +P + +G+ V G +A + P++ ++G V D ++ Sbjct: 1201 EEVYTDEQ-MLPKDYRVVVKNGDAVEIGNLLAESNVDGDGRAPLVAGLAGNVYVDDDRLV 1259 Query: 1042 DGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFL 1101 + +E+ ++ + + + G+ + + + G + +Y Sbjct: 1260 IQAKDIEEHEEVIAHAARLRVKDGDLVQVGQQMTEG---SSDPQEMLQLRGREAVQEYLT 1316 Query: 1102 PGKAIVQLEDGVQISSG-------DTLARIPQESGGTKDITGG 1137 V GV I+ L R+ E G ++ G Sbjct: 1317 NEAQKVYRSQGVGINDKHIEVIVRQMLRRVRIEEPGDTELLPG 1359 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 117/295 (39%), Positives = 160/295 (54%), Gaps = 31/295 (10%) Query: 1100 FLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEI 1159 LP V +++G + G+ LA + G + GL Sbjct: 1209 MLPKDYRVVVKNGDAVEIGNLLAESNVDGDGRAPLVAGL--------------------- 1247 Query: 1160 SGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHD 1219 +G V + ++ + +EE+I +L V +G+ V+ G +++G P + Sbjct: 1248 AGNVYVDDDR------LVIQAKDIEEHEEVIAHAARLRVKDGDLVQVGQQMTEGSSDPQE 1301 Query: 1220 ILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQ 1279 +L+LRG AV Y+ NE Q VYR QGV INDKHIEVIVRQMLR+ I G ++ L GE Sbjct: 1302 MLQLRGREAVQEYLTNEAQKVYRSQGVGINDKHIEVIVRQMLRRVRIEEPGDTELLPGEL 1361 Query: 1280 VEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAG 1339 VE + N + + G A LLGITKASL+T+SF+SAASFQETTRVLTEAAV G Sbjct: 1362 VELHELNRINASIVSQGGDPALAVPVLLGITKASLSTDSFLSAASFQETTRVLTEAAVNG 1421 Query: 1340 KRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQVTAEDASASLA 1394 K D LRGLKENV++G+LIPAGTG ++ R+ A A Q+T+ A + Sbjct: 1422 KIDYLRGLKENVVIGKLIPAGTGM----EQRRKLAEEAALRVAQITSTPADREVP 1472 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 90/136 (66%), Positives = 119/136 (87%) Query: 13 KTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLC 72 + EF+AI+I+LASP+ I SWS GEV KPETINYRT +PERDGLFC +IFGP +D+EC C Sbjct: 3 EINEFNAIRISLASPEDILSWSHGEVTKPETINYRTLRPERDGLFCEKIFGPTRDWECYC 62 Query: 73 GKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPL 132 GKYKR++++G++C+KCGVEVT++KVRR+RMGHI+LASP +HIWF+K PSR+GLLLD+ Sbjct: 63 GKYKRVRYKGIVCDKCGVEVTRSKVRRDRMGHIKLASPVSHIWFVKGTPSRLGLLLDISP 122 Query: 133 RDIERVLYFESYVVIE 148 R++ERVLYF SY++ + Sbjct: 123 RNLERVLYFASYIITD 138 Score = 89.8 bits (221), Expect = 7e-16, Method: Composition-based stats. Identities = 57/195 (29%), Positives = 86/195 (44%), Gaps = 9/195 (4%) Query: 1026 PVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQG 1085 PV V+G V F D + + D + L LD + G +R L G Sbjct: 1047 PVTNPVTGEVIF----DTDSEILEDDGKHIANVLKSLDKEAQAEFGIYVRSVLTCNADYG 1102 Query: 1086 NDVLIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDTLARIPQESGGTK---DITGGLPRV 1141 G ++ + V + I G L +GG DIT GLPRV Sbjct: 1103 ICRKCYGRNLATGKMVEIGEAVGIIAAQSIGEPGTQLTLRTFHTGGVATDTDITQGLPRV 1162 Query: 1142 ADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEG 1201 ++FEAR PK A+LA+I+G V +E +G RRL I + E+M+PK ++ V G Sbjct: 1163 QEIFEARIPKGKAVLAQIAGRVQIVREEEGIRRLRIVSEEVY-TDEQMLPKDYRVVVKNG 1221 Query: 1202 ERVERGDVISDGPEA 1216 + VE G+++++ Sbjct: 1222 DAVEIGNLLAESNVD 1236 >UniRef50_UPI0001C30E3D DNA-directed RNA polymerase, beta'''' subunit n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C30E3D Length = 1355 Score = 894 bits (2310), Expect = 0.0, Method: Composition-based stats. Identities = 450/941 (47%), Positives = 584/941 (62%), Gaps = 63/941 (6%) Query: 172 FGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSG 231 FG+ F MGAE+++ LL+ +DL+ E E+L +EL +T K+ + KR+K++ AF+QSG Sbjct: 280 FGEYFRGGMGAESVRDLLEQVDLDAEREEL-QELVKTAKGQKQSRSVKRLKVVSAFIQSG 338 Query: 232 NKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDII 291 N+PE MIL +PV+PP+LRP+V LDGGRFATSDLNDLYRRVINRNNRLKRLLDL AP+II Sbjct: 339 NRPEMMILEAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPEII 398 Query: 292 VRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSG 351 V NEKRMLQEAVDAL DNGRRGR +TG RPLKSL+DM+KGKQGRFRQNLLGKRVDYSG Sbjct: 399 VNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSG 458 Query: 352 RSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDI 411 RSVI GP L+LHQCGLPK MALELFKPFI +L R A IKAAKKMV+ VWD+ Sbjct: 459 RSVIVSGPSLKLHQCGLPKLMALELFKPFIMARLVERKAAQNIKAAKKMVDSMIPEVWDV 518 Query: 412 LDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVP 471 L+EVI EHPVLLNRAPTLHRLGIQAFEP+L+EGKAIQ+HPLVC A+NADFDGDQMAVH+P Sbjct: 519 LEEVIHEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQVHPLVCHAFNADFDGDQMAVHLP 578 Query: 472 LTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTR----------DCVNAK 521 L+ EAQ EAR LM+S NNILSPA+G P+ P+QD++LG YY+T D A Sbjct: 579 LSAEAQAEARILMLSANNILSPAHGAPLATPTQDMILGAYYLTYGPEADELAKVDPARAA 638 Query: 522 GEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWM 581 V +EAE Y G+ LH + R + G ++ TTVGR I Sbjct: 639 KRPHVYRTAQEAEWSYEHGVTRLHDLAEFRPAGRQ---GGHIL-------TTVGRIIYND 688 Query: 582 IVPKGLP-----------YSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFA 630 + + + Y VN+++ K+ ++ ++ + G D GF Sbjct: 689 KIERAIRETLGADYDPASYEFVNRSMKKRDTTQFVDDLVQAYGAATISQVLDAFKDLGFR 748 Query: 631 YAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAAN 690 YA ++G +V +D+VIP +K EI+ + E EVAEIQ+Q+ GL+T ER + V+D W AA Sbjct: 749 YATQAGITVSKNDVVIPPEKGEILGKYEGEVAEIQDQYDMGLITEEERKDAVVDRWNAAT 808 Query: 691 DRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKP 750 D V++AM + N I+MMA+SGARGS QIRQLAGMRGLMA P Sbjct: 809 DEVAEAMEQHFNE---------------LNPIFMMANSGARGSFKQIRQLAGMRGLMANP 853 Query: 751 DGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVT 810 G IIE P+ ANF EGL+V++YF STHGARKGLADTAL+TA+SGYLTRRLVDVAQD+++ Sbjct: 854 KGEIIERPVKANFMEGLDVIEYFTSTHGARKGLADTALRTADSGYLTRRLVDVAQDVIIR 913 Query: 811 EDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCD 870 ++DCG + + + GG+ D V+GRV A D L P + ++ + + Sbjct: 914 QEDCGAEQYVELDLYKAGGE----PNDNVVGRVAALD-LGPRKSVVVERGIEMSRADFAA 968 Query: 871 LLEENSVDAVKV--RSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGT 928 LLE D VK+ RSV+ C+ GVC CYGR +A G+ G+A+G+IAAQSIGEPGT Sbjct: 969 LLEAYGEDNVKIPVRSVLKCEAPTGVCQACYGRAMATGNTAQIGDAVGIIAAQSIGEPGT 1028 Query: 929 QLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTE--LKLID 986 QLTMRTFH GG A +V + + + G +V + +I Sbjct: 1029 QLTMRTFHTGGVAGADITHGLPRVVELFEARKPKGLAKIAEVGGVVEIEETDKALTVVIT 1088 Query: 987 EFGRTKESYKVPYGAVLAKGDGEQVAGGETV--ANWDPHTMPVI-----TEVSGFVRFTD 1039 + G + + P L G++V G+ + + PH + I TE+ + Sbjct: 1089 DDGGDEHRHTFPRRTRLHVERGDKVEPGKQLNEGSLYPHELLAIRGRTETELYLVKEVQE 1148 Query: 1040 MIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKI 1080 + Q + + + ++ G DL P + + Sbjct: 1149 VYKSQGVDINDKHIELIVRQMLKKVRVDQKGDTDLLPGVFV 1189 Score = 308 bits (789), Expect = 9e-82, Method: Composition-based stats. Identities = 139/379 (36%), Positives = 193/379 (50%), Gaps = 7/379 (1%) Query: 1030 EVSGFVRFTDMIDGQTITRQTD-ELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDV 1088 V G V D+ +++ + E++ +L++ +R LK G Sbjct: 937 NVVGRVAALDLGPRKSVVVERGIEMSRADFAALLEAYGEDNVKIPVRSVLKCEAPTGVCQ 996 Query: 1089 LIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDTLARIPQESGGTK--DITGGLPRVADLF 1145 G M V + I G L +GG DIT GLPRV +LF Sbjct: 997 ACYGRAMATGNTAQIGDAVGIIAAQSIGEPGTQLTMRTFHTGGVAGADITHGLPRVVELF 1056 Query: 1146 EARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVE 1205 EAR+PK A +AE+ G+V + K V+ DG D + P+ +L+V G++VE Sbjct: 1057 EARKPKGLAKIAEVGGVVEIEETDKALT--VVITDDGGDEHRHTFPRRTRLHVERGDKVE 1114 Query: 1206 RGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKAT 1265 G +++G PH++L +RG Y+V EVQ+VY+ QGV INDKHIE+IVRQML+K Sbjct: 1115 PGKQLNEGSLYPHELLAIRGRTETELYLVKEVQEVYKSQGVDINDKHIELIVRQMLKKVR 1174 Query: 1266 IVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASF 1325 + G +D L G V+ N+ + NG A +LGITKASL T+SF+SAASF Sbjct: 1175 VDQKGDTDLLPGVFVDRHDYARINQVVIDNGGEPAQAEEIILGITKASLNTDSFLSAASF 1234 Query: 1326 QETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQVT 1385 QETT+VLT+AA+ GK D L GLKENVI+G+LIPA TG ++ R+ A P Sbjct: 1235 QETTKVLTDAALEGKIDRLNGLKENVIIGKLIPAATGLKRYR-RIEIEPAEPLPRGMDDV 1293 Query: 1386 AEDASASLAELLNAGLGGS 1404 LA L G + Sbjct: 1294 GLLDHDELAAELGLTDGEA 1312 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 98/178 (55%), Positives = 128/178 (71%), Gaps = 8/178 (4%) Query: 13 KTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLC 72 FDAI+I LAS IRSWS GEV KPETINYRT KPE+DGLFC RIFGP KD+EC C Sbjct: 3 DINNFDAIEIGLASSKQIRSWSSGEVTKPETINYRTLKPEKDGLFCERIFGPTKDWECYC 62 Query: 73 GKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPL 132 GKYKR++++G++CE+CGVEVT++KVRRERMGHI+LA+P +HIWF K +PSRIG LLDM Sbjct: 63 GKYKRVRYKGIVCERCGVEVTRSKVRRERMGHIDLAAPVSHIWFFKGVPSRIGYLLDMAP 122 Query: 133 RDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLK 190 +++E+VLYF + +V E+ LD+L++ ++ AE + LL+ Sbjct: 123 KELEKVLYFAASIVT--------WIDDEARERDLDSLQDEVNKVLDSYAAEKEERLLE 172 >UniRef50_B3DTE1 DNA-directed RNA polymerase subunit beta' n=50 Tax=Actinobacteridae RepID=RPOC_BIFLD Length = 1345 Score = 889 bits (2296), Expect = 0.0, Method: Composition-based stats. Identities = 426/995 (42%), Positives = 599/995 (60%), Gaps = 71/995 (7%) Query: 141 FESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQ 200 F+ + ++ G + + + + + +GD FD MGAEAI+ L+S+DLE ++ Sbjct: 224 FDKFKKLKPGDMVDDV------DLWREMQDRYGDYFDGCMGAEAIKKRLQSLDLETISKE 277 Query: 201 LREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRF 260 LREE+ + SE ++ K KR+K++ AF+ +GNKPE M+L V+PV+PPDLRP+V LDGGRF Sbjct: 278 LREEIKDA-SEQRKTKALKRLKVVNAFLTTGNKPEAMVLDVIPVIPPDLRPMVQLDGGRF 336 Query: 261 ATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSN 320 ATSDLNDLYRRVINRNNRLKRL++L AP+I++ NEKRMLQEAVD+L DNGRRGR +TG++ Sbjct: 337 ATSDLNDLYRRVINRNNRLKRLIELGAPEIMLNNEKRMLQEAVDSLFDNGRRGRPVTGAS 396 Query: 321 KRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPF 380 RPLKSL+DM+KGKQGRFRQNLLGKRVDYSGRSVI VGP LR+HQCGLPK MALELFKPF Sbjct: 397 NRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPSLRMHQCGLPKPMALELFKPF 456 Query: 381 IYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPV 440 + +L A +K+AK++V+R +A VW +L+EVI EHPVLLNRAPTLHRLGIQAFEP+ Sbjct: 457 VIKRLVDLNYAQNMKSAKRLVDRGDAEVWGVLEEVISEHPVLLNRAPTLHRLGIQAFEPI 516 Query: 441 LIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPII 500 L+EGKAI L PL CAA+NADFDGDQMAVH+PL+ EAQ EAR+LMM+++NIL PA+G + Sbjct: 517 LVEGKAIHLPPLACAAFNADFDGDQMAVHLPLSAEAQAEARSLMMASDNILKPADGHTVT 576 Query: 501 VPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITE---YEK 557 +PSQD++LGLYY++ KG+G V + +EAE + A+V +R+ E K Sbjct: 577 MPSQDMILGLYYLSTVLEGVKGQGRVFSSLEEAEMALDRHEIDMQAKVLIRLPESFVLPK 636 Query: 558 DANG-------------------ELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGK 598 + T L T+ GR + +P P VN+ + K Sbjct: 637 NWEPGEVKVLDPREGEDEVVKEERFHDGTVLFATSYGRILFNETLPTDYP--FVNEQVAK 694 Query: 599 KAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAE 658 +SK+++ + D + GF A SG S D+ P ++ E I+E E Sbjct: 695 GRLSKIVDDIAMRYSTQQVAATLDALKDLGFTRAPWSGVSFAFSDVNEPPERDEKIAEYE 754 Query: 659 AEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVS 718 A+ ++ ++ GL+T R ++ID+W VSK + + Sbjct: 755 AKADKVNANYEMGLLTEEARRQELIDLWTECTAEVSKEVEEKFD---------------P 799 Query: 719 FNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHG 778 +++ ++ SGARG+ QI Q+AGMRGL+A P G II P+ +N+R+GL+VL+YFIS HG Sbjct: 800 TSNLAIIVQSGARGNMMQINQIAGMRGLVANPKGEIIPRPVKSNYRDGLSVLEYFISQHG 859 Query: 779 ARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDR 838 ARKGLADTAL+TA SGYLTRRLVDV+QD++V E+DCGT G+ + D L Sbjct: 860 ARKGLADTALRTAESGYLTRRLVDVSQDVIVREEDCGTKAGLPIRVAERDNDGNLVLVKA 919 Query: 839 VLG----RVTAEDVLKPGTAD-ILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFG 893 G R+ A DV+ P +L R+ L + L + V+ VK RSV++C++ G Sbjct: 920 ADGGPYSRLLAADVIDPADGQTVLYKRDDALSMDVLNDLVAHGVEEVKCRSVLTCESKRG 979 Query: 894 VCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASR-AAAESSIQV 952 VCA CYG LA +++ GE +G++AAQSIGEPGTQLT+R+FH GG A+ + +V Sbjct: 980 VCAKCYGWSLATNKLVDVGETVGIVAAQSIGEPGTQLTLRSFHSGGVAAASDITQGLPRV 1039 Query: 953 KNKGSIKLSN-----------VKSVVNSSGKLVITSRNTELKLIDEFGRTKE-SYKVPYG 1000 + +K V N G+ +I + + + E G K +Y+V Sbjct: 1040 TELFEARTPKGEAPITEFAGSIKIVENDRGRQIILTPDADSGAPKEDGVIKPITYQVSKR 1099 Query: 1001 AVLAKGDGEQVAGGETV--ANWDPHTMP-VITEVSGFVRFTDMIDGQTITRQTDELTGLS 1057 L DG+ + G + + DP + ++ + + V + + ++ D Sbjct: 1100 VPLKVADGDHIKVGTQLVEGSVDPKKILTILGKRAAQVNIVEEVHTVYRSQGVDIHDKHI 1159 Query: 1058 SLVVLDSAERT----AGGKDLRPALKIVDAQGNDV 1088 ++V R +G DL P + +A+ ++ Sbjct: 1160 EVIVHQMTRRVTIIDSGDTDLLPGELVDNARFREI 1194 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 138/359 (38%), Positives = 191/359 (53%), Gaps = 20/359 (5%) Query: 1022 PHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIV 1081 P++ + +V D DGQT+ + D+ LS V+ D R L Sbjct: 924 PYSRLLAADV------IDPADGQTVLYKRDDA--LSMDVLNDLVAHGVEEVKCRSVLTCE 975 Query: 1082 DAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDTLARIPQESGGT---KDITGG 1137 +G G + + V + I G L SGG DIT G Sbjct: 976 SKRGVCAKCYGWSLATNKLVDVGETVGIVAAQSIGEPGTQLTLRSFHSGGVAAASDITQG 1035 Query: 1138 LPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYE--------EM 1189 LPRV +LFEAR PK A + E +G + + +G++ ++ D P E Sbjct: 1036 LPRVTELFEARTPKGEAPITEFAGSIKIVENDRGRQIILTPDADSGAPKEDGVIKPITYQ 1095 Query: 1190 IPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKIN 1249 + K L V +G+ ++ G + +G P IL + G A IV EV VYR QGV I+ Sbjct: 1096 VSKRVPLKVADGDHIKVGTQLVEGSVDPKKILTILGKRAAQVNIVEEVHTVYRSQGVDIH 1155 Query: 1250 DKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGI 1309 DKHIEVIV QM R+ TI+++G +D L GE V+ +R + NR + NG A L+GI Sbjct: 1156 DKHIEVIVHQMTRRVTIIDSGDTDLLPGELVDNARFREINRNIVKNGGRPAVGRPALMGI 1215 Query: 1310 TKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD 1368 TKASLAT+S++SAASFQETTRVLTEAA++ K D+L+GLKENVI+G+LIPAGTG A +++ Sbjct: 1216 TKASLATDSWLSAASFQETTRVLTEAALSEKVDDLKGLKENVIIGKLIPAGTGLARYRN 1274 Score = 229 bits (583), Expect = 7e-58, Method: Composition-based stats. Identities = 98/203 (48%), Positives = 136/203 (66%), Gaps = 14/203 (6%) Query: 13 KTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLC 72 FD I+I LA+ D IR WS GEVKKPETINYRT KPE+DGLF +IFGP +D+EC C Sbjct: 3 DVNAFDKIRIGLATADDIRGWSHGEVKKPETINYRTLKPEKDGLFGEQIFGPTRDWECAC 62 Query: 73 GKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPL 132 GKYKR++ +G++CE+CGVEVT+++VRRERMGHIELA+P HIWF K +PSR+G LL++ Sbjct: 63 GKYKRVRFKGIVCERCGVEVTRSRVRRERMGHIELAAPVTHIWFFKGVPSRLGYLLNVTP 122 Query: 133 RDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSM 192 +D+ERV+YF SY+V E + E++ + L DEFD+++ + Sbjct: 123 KDLERVIYFASYMVTE-----------VNEDERHNDLPGLQDEFDSEI---KRLEQRRDS 168 Query: 193 DLEQECEQLREELNETNSETKRK 215 D+E +++ E+L + K Sbjct: 169 DIEARAKKVEEDLAALEEAGEAK 191 >UniRef50_A4E9H2 DNA-directed RNA polymerase n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9H2_9ACTN Length = 1373 Score = 877 bits (2267), Expect = 0.0, Method: Composition-based stats. Identities = 422/962 (43%), Positives = 572/962 (59%), Gaps = 65/962 (6%) Query: 134 DIERVLYFESYVVIE--GGMTNLERQQILTEEQYLDALEEFGD-EFDAKMGAEAIQALLK 190 DIE E + + L + ++++E + + F MGAEA++ LL Sbjct: 86 DIEEECKDEKQLRTDAFNAFMKLSERDLISDEPLFREMTRYYSMYFKGGMGAEAVRDLLA 145 Query: 191 SMDLEQECEQLREELNETNSE-TKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDL 249 ++DL E E+L+ + + +S+ KR+K KR+++++AF++ GN P MIL V+PV+PPDL Sbjct: 146 AIDLPSEAEKLKAIIADEDSQKQKREKAVKRLEVVDAFLKGGNSPANMILDVIPVIPPDL 205 Query: 250 RPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDN 309 RP+V LDGGRFA SDLNDLYRRVINRNNRLKRLLDL AP IIV NEKRMLQE+VDAL DN Sbjct: 206 RPMVQLDGGRFAASDLNDLYRRVINRNNRLKRLLDLDAPAIIVNNEKRMLQESVDALFDN 265 Query: 310 GRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLP 369 GRRGR ++G RPLKSLA+ +KGKQGRFRQNLLGKRVDYSGRSVI P L LHQCGLP Sbjct: 266 GRRGRPVSGRGGRPLKSLAEALKGKQGRFRQNLLGKRVDYSGRSVIVTDPKLLLHQCGLP 325 Query: 370 KKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTL 429 K MALELFKPF+ +L G IK AK+ ++R VWDIL+EVI VLLNRAPTL Sbjct: 326 KTMALELFKPFVMKRLVELGKVENIKGAKRAIDRGATFVWDILEEVIDGRVVLLNRAPTL 385 Query: 430 HRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNN 489 HRL IQAFEPVL+EGKAI LHPLVC+ +NADFDGDQM+VHVPL+ +AQ EAR LM+S NN Sbjct: 386 HRLSIQAFEPVLVEGKAIHLHPLVCSPFNADFDGDQMSVHVPLSSQAQAEARVLMLSANN 445 Query: 490 ILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYR-SGLASLHARV 548 + SPA+G+P+ +PSQD+++G+YY+T+ GE V +A Y + A++ Sbjct: 446 LRSPASGKPVNIPSQDMIIGVYYLTQVRDGLPGENHVFASFDDALHAYDCRSEVDMQAKI 505 Query: 549 KVRI------------TEYEKDANGELVA--------KTSLKDTTVGRAILW-MIVPKGL 587 +VR+ T + NG+ KT+ +T++GR I +P+ Sbjct: 506 QVRVSAADANVINEDGTRIFRVKNGKNEFVDYDVTGNKTARFETSIGRIIFNRQCLPED- 564 Query: 588 PYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIP 647 Y +N + K ++K++ C D I Y+GF YA R+G ++ + D +IP Sbjct: 565 -YEFMNYKMVKGDVAKLVADCCDRYPEAKVGPILDAIKYSGFHYATRAGLTISVWDALIP 623 Query: 648 EKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVI 707 +K E++ A+A V +I E F+ G + ER+ +V++ W A D+V+ M+D E Sbjct: 624 AEKQELLDRAQANVDQINEYFEEGFINETERHIEVVNEWTACTDKVAALMLDMFDEE--- 680 Query: 708 NRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGL 767 N +YMMADSGARGS Q+RQL GMRGLMA G I+ PI ANFREGL Sbjct: 681 ------------NPLYMMADSGARGSKTQLRQLGGMRGLMADMSGETIDLPIKANFREGL 728 Query: 768 NVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIE 827 L+YFIST+GARKGL DTA T++SGYLTRRLVDVAQD++V E+DCGTHEG+ +I Sbjct: 729 LPLEYFISTYGARKGLVDTASHTSDSGYLTRRLVDVAQDVIVREEDCGTHEGVTYNLIIP 788 Query: 828 GGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHE-QWCDLLEENSVDAVKVRSVV 886 G L ++GR EDV+ P +L ++ + + + + + VK+R+++ Sbjct: 789 G---TTDLNTDLVGRCFIEDVVAP-DGTVLFEQDGYIEKVADIQKMVDAGLKKVKLRALL 844 Query: 887 SCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAAS---- 942 +C + +GVC CYG DL+ + G A+G+IAAQSIGEPGTQLTMRT H GG A Sbjct: 845 TCRSKYGVCQKCYGWDLSTRRPVAIGTAVGIIAAQSIGEPGTQLTMRTIHSGGVAGVDDI 904 Query: 943 ----RAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESY--- 995 + V N L + SG L I +E L Sbjct: 905 TQGLPTVSRMFDIVGNVNEKILGREAELAPYSGHLSIKPEKSEYVLTLTDSEDHTRVLDE 964 Query: 996 -KVPYGAVLA--KGDGEQVAGGETVAN--WDPHTMPVITEVSGFVR-FTDMIDGQTITRQ 1049 +VP DG +V G+ + + + +T++ + F + + ++ Sbjct: 965 RRVPASVRFMPEIEDGCEVRAGDQITKGFVNFRNLRKLTDIESTMHTFVESVKDVYTSQG 1024 Query: 1050 TD 1051 D Sbjct: 1025 VD 1026 Score = 239 bits (609), Expect = 8e-61, Method: Composition-based stats. Identities = 113/402 (28%), Positives = 162/402 (40%), Gaps = 19/402 (4%) Query: 1022 PHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIV 1081 P T + T++ G D++ + + + LR L Sbjct: 788 PGTTDLNTDLVGRCFIEDVVAPDGTVLFEQDGYIEKVADIQKMVDAGLKKVKLRALLTCR 847 Query: 1082 DAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDTLARIPQESGGTK---DITGG 1137 G G D+ + + V + I G L SGG DIT G Sbjct: 848 SKYGVCQKCYGWDLSTRRPVAIGTAVGIIAAQSIGEPGTQLTMRTIHSGGVAGVDDITQG 907 Query: 1138 LPRVADLFE------ARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPY----E 1187 LP V+ +F+ + A LA SG +S E K V+T D D E Sbjct: 908 LPTVSRMFDIVGNVNEKILGREAELAPYSGHLSIKPE---KSEYVLTLTDSEDHTRVLDE 964 Query: 1188 EMIPKWRQL--NVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQG 1245 +P + + +G V GD I+ G ++ +L + + V V+DVY QG Sbjct: 965 RRVPASVRFMPEIEDGCEVRAGDQITKGFVNFRNLRKLTDIESTMHTFVESVKDVYTSQG 1024 Query: 1246 VKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRD 1305 V +NDKHIEV+ RQMLR+ I N G S +L G+ V+ + G Sbjct: 1025 VDLNDKHIEVLARQMLRRVQITNPGDSKYLLGQYVDRYEFADEVERVARLGGQAPVAEPV 1084 Query: 1306 LLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAY 1365 +LG K + +S++S+ASF T VLTEAA+ GK D L LK NVIVG+ IPAGTG Sbjct: 1085 ILGTLKVASNIDSWLSSASFIRTAGVLTEAAIEGKVDHLLDLKSNVIVGKKIPAGTGLKP 1144 Query: 1366 HQDRMRRRAAGEAPAAPQVTAEDASASLAELLNAGLGGSDNE 1407 + + + A + SL E L D + Sbjct: 1145 YANAKLTYRTADGYVDIDGPASPNAKSLPEWAPVELKDLDEQ 1186 >UniRef50_C5CGD8 DNA-directed RNA polymerase n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CGD8_KOSOT Length = 1560 Score = 853 bits (2204), Expect = 0.0, Method: Composition-based stats. Identities = 441/1208 (36%), Positives = 628/1208 (51%), Gaps = 161/1208 (13%) Query: 152 TNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNE-TNS 210 T L+ I+ E +Y E + + + GA AIQ LL+S+DLE+ Q+ EL S Sbjct: 300 TGLKVGDIIIENEYDAYKEIYPGKIECDYGALAIQKLLRSLDLEELKIQIEHELKGIPKS 359 Query: 211 ETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYR 270 + KL +R+K ++ F++SGNKPEW++L LPV+PP+LRP++ ++GGRFAT+DLNDLYR Sbjct: 360 SARALKLLRRLKFVKDFLKSGNKPEWIVLEALPVIPPELRPMIQIEGGRFATTDLNDLYR 419 Query: 271 RVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADM 330 RVINRNNRL +LL + APDIIVRNEKRMLQEAVD+L+ NGR G+A+T + RPLKSL D+ Sbjct: 420 RVINRNNRLAKLLSIGAPDIIVRNEKRMLQEAVDSLIYNGRVGKAVTDKSGRPLKSLTDL 479 Query: 331 IKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLEL--R 388 +KGK+GRFR+NLLGKRVDYSGR+VI VGP L++H+CG+PK+MA+ELFKPF+ GKL Sbjct: 480 VKGKKGRFRRNLLGKRVDYSGRAVIVVGPDLKIHECGIPKRMAMELFKPFVLGKLLHGSE 539 Query: 389 GLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQ 448 T K K ++E+E W++L++VI+ HPVLLNRAPTLHR+ IQAF P L+EG AIQ Sbjct: 540 SSKTARKLKKTIIEKEMPEAWEVLEDVIKGHPVLLNRAPTLHRISIQAFIPRLVEGNAIQ 599 Query: 449 LHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVL 508 LHPLVCA +NADFDGDQMAVHVPL+ AQ EA+ LM+S N++SPANG+PI +P +D+++ Sbjct: 600 LHPLVCAPFNADFDGDQMAVHVPLSAAAQAEAKFLMLSRYNVISPANGKPISMPGKDIIV 659 Query: 509 GLYYMTRDCVNAK---------------------------------GEGMVLTGPKEAER 535 G+YY+T K + EA Sbjct: 660 GVYYLTTVDHEYKVFEEKLNKYQEELKSQGIDGVELRRRVREKALEKINWKFSSEAEALL 719 Query: 536 LYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQA 595 Y G+ LH + V++ E + D L TTVGR I I+P+ L + Sbjct: 720 AYDIGIIKLHEPILVKLDENKGD----------LTLTTVGRIIFNAILPEDLK--DYSTT 767 Query: 596 LGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIIS 655 GKKAI ++ C++ G+ T D +M GF YA SG ++ I D+VI +K +II Sbjct: 768 FGKKAIKNLIYRCFQEYGIDRTADLLDDMMRLGFHYATISGLTISIRDIVIYPEKDKIIE 827 Query: 656 EAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEK 715 EA +V +I++ ++ G + +R ++I IW + + + D K Sbjct: 828 EARKKVDKIEDLYRKGFLNELDRSQEIIKIWEKTTEELMRKTFDEF-------------K 874 Query: 716 QVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFIS 775 + FN ++MM DSGARG+ Q++QLAGMRGLMA P G IE PI +NFR+GL L++F S Sbjct: 875 KYPFNPVFMMVDSGARGNIDQLKQLAGMRGLMADPSGKTIEVPIISNFRDGLTELEFFTS 934 Query: 776 THGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPL 835 THGARKG ADTAL+T+ +GYLTRRLVDVAQ + +T DCGT GI ++ E L Sbjct: 935 THGARKGSADTALRTSFAGYLTRRLVDVAQGVTITTPDCGTSNGIEAFEMMADDVTIEKL 994 Query: 836 RDRVLGRVTAEDVLKPGTADIL--------VPRNTLLHEQWCDLLEENSVDAVKVRSVVS 887 D + GRV AEDV+ P T ++L R+T++ ++ + R + Sbjct: 995 EDFIFGRVLAEDVIDPETNEVLKNPVSGKEYIRDTMIRDEDAKFVASF-------RKTIP 1047 Query: 888 CDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGE----PGTQLTMRTFHIGGAASR 943 V + G + E IG+ GTQLT H Sbjct: 1048 VKKTEKVNLNEVGHFGYYAELAEDVE---------IGDKEFKAGTQLTSDILH------- 1091 Query: 944 AAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVL 1003 ++ G + L +V ++ + +F + V Y + Sbjct: 1092 -----ELKTLEVGEVMLDIYPAV-------------GKVYVGPKFRDKNGTVLVKYQEKI 1133 Query: 1004 AKGDGEQ-VAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVL 1062 ++ V G T P + +T D + Sbjct: 1134 DVVTAKKLVDNGFTSVEVRP----------------VIKIRSVLTCDADHGVCAMCYGMD 1177 Query: 1063 DSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLA 1122 S + + + PGT + + F G Sbjct: 1178 LSNHEIVNVGE-----AVGIVAAQSIGEPGTQLTMRTFHTGG------------------ 1214 Query: 1123 RIPQESGGTKDITGGLPRVADLFEARRP-KEP-AILAEISGIVSFGKETKGKRRLVITPV 1180 DIT GLPR +LFEAR+ K+P A+ AE GIV + R+ + Sbjct: 1215 -----IATGADITRGLPRAEELFEARKKLKDPEALFAEEEGIVKDIATDEKGRKKIYIET 1269 Query: 1181 DGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDV 1240 E + + V G++V +G+ ++ G P ++ GV Y++ E + V Sbjct: 1270 LEGKIKEHDLSTVIKPRVEVGDKVLKGESLTTGTIRPRKLMEKLGVIPTAMYLLMETKRV 1329 Query: 1241 YRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGA 1300 Y QGV+I+DKH E+I+RQML +V+ GS+D+L G+ + VK NRE+ + K Sbjct: 1330 YAEQGVEIHDKHFELIIRQMLSMVEVVDPGSTDYLPGDLLSLQDVKKINREILEDNKKVE 1389 Query: 1301 TYSRDLLG 1308 ++G Sbjct: 1390 ENREYVIG 1397 Score = 204 bits (520), Expect = 2e-50, Method: Composition-based stats. Identities = 99/230 (43%), Positives = 135/230 (58%), Gaps = 17/230 (7%) Query: 11 QTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYEC 70 T + ++I +ASP+ IRSWS GEVKKPETINYRTFKPERDGLFC +IFGP KDYEC Sbjct: 4 STFNRKISTVQIKIASPERIRSWSSGEVKKPETINYRTFKPERDGLFCEKIFGPTKDYEC 63 Query: 71 LCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDM 130 CGKYK K+ G ICE+CGV V + RR R+GHIELA+P H+W+LKS PS + LL++ Sbjct: 64 ACGKYKGKKYEGTICERCGVRVESKEARRRRIGHIELAAPVVHVWYLKSAPSILASLLNI 123 Query: 131 PLRDIERVLYFES-------YVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMG-- 181 P +D+E ++Y+ S YVV + T+ Q L + +Y ++ +FD + G Sbjct: 124 PSKDLENIIYYGSKRVIEKLYVVTDPKGTDFFPGQTLYQTEYDIYSKK--WDFDVEQGYK 181 Query: 182 -----AEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEA 226 I + + +E ELN E + +TK+ + E Sbjct: 182 IRSPRGPVIAEIDGKVKIENGTGNTERELNWIIIEGENG-ITKKYPIFEG 230 Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats. Identities = 135/551 (24%), Positives = 212/551 (38%), Gaps = 106/551 (19%) Query: 840 LGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDA------VKVRSVVSCDTDFG 893 +G+V + +LV + L +N + +K+RSV++CD D G Sbjct: 1109 VGKVYVGPKFRDKNGTVLVKYQEKIDVVTAKKLVDNGFTSVEVRPVIKIRSVLTCDADHG 1168 Query: 894 VCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVK 953 VCA CYG DL+ I+N GEA+G++AAQSIGEPGTQLTMRTFH GG A+ A + Sbjct: 1169 VCAMCYGMDLSNHEIVNVGEAVGIVAAQSIGEPGTQLTMRTFHTGGIATGADIT---RGL 1225 Query: 954 NKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAG 1013 + K + + L + + K+ Y Sbjct: 1226 PRAEELFEARKKLKDPEA-LFAEEEGIVKDIATDEKGRKKIY------------------ 1266 Query: 1014 GETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKD 1073 I + G ++ D+ + + + Sbjct: 1267 --------------IETLEGKIKEHDLSTVIKPRVEVGDKVLKGESLTT---------GT 1303 Query: 1074 LRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKD 1133 +RP + + + + + + I L+ + G+ D Sbjct: 1304 IRPRKLMEKLGVIPTAMYLLMETKRVYAEQGVEIHDKHFELIIR-QMLSMVEVVDPGSTD 1362 Query: 1134 ITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKW 1193 G + L + ++ + E + V +E RRL +D + Sbjct: 1363 YLPG--DLLSLQDVKKINRE--ILEDNKKVEENREYVIGRRLARRILDEDEEGNVT---- 1414 Query: 1194 RQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHI 1253 ++ V G+ I++ E + I+ G+ +T Y V E D Y+ +I+ Sbjct: 1415 -KIAVE-------GEPITE--ELMNKIIE-TGIKEITIYDVTE--DEYQKLLEEIDP--- 1458 Query: 1254 EVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKAS 1313 E+++ Q + ++ N K Y R LL ITKAS Sbjct: 1459 ELVIPQ------------------------------KTIQINPKETIKYRRRLLRITKAS 1488 Query: 1314 LATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRR 1373 L + ++SAASFQ+T +VLTEA+V GK D L GLKENVIVG+LIPAGTG + + Sbjct: 1489 LESHGWLSAASFQQTPQVLTEASVEGKVDYLLGLKENVIVGQLIPAGTGLDMYANIQIEE 1548 Query: 1374 AAGEAPAAPQV 1384 A A V Sbjct: 1549 AREVTEEAKDV 1559 >UniRef50_A7HNY1 DNA-directed RNA polymerase subunit beta' n=5 Tax=Bacteria RepID=RPOC_FERNB Length = 1650 Score = 842 bits (2175), Expect = 0.0, Method: Composition-based stats. Identities = 452/1234 (36%), Positives = 661/1234 (53%), Gaps = 148/1234 (11%) Query: 152 TNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNE-TNS 210 T +++ Q++T++ Y + + +A+ GA AI+ LL+ +DLE ++ EL + S Sbjct: 434 TGIKKGQVITQQDYEAYSRIYPGKIEAETGAMAIKKLLEKIDLEVMKAEIEAELKKIPKS 493 Query: 211 ETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYR 270 + KKL K++K+++ + S KPEWM+L LPV+PP++RP++ +DGGRFAT+DLNDLYR Sbjct: 494 SVRAKKLLKKMKIVKDLIDSQTKPEWMVLEALPVVPPEIRPMIQIDGGRFATTDLNDLYR 553 Query: 271 RVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADM 330 RVI RNNRLK+LL++ AP++IVRNEKRMLQEAVD L+ NG+ G+A N R LKSL D+ Sbjct: 554 RVIMRNNRLKKLLEMNAPEVIVRNEKRMLQEAVDNLIFNGKIGKAYVDRNGRQLKSLTDL 613 Query: 331 IKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKL----E 386 I+GK+GRFR+NLLGKRVDYSGR+VI VGP+L++H+CGLPKKMALELF+PF+ +L Sbjct: 614 IRGKKGRFRRNLLGKRVDYSGRAVIVVGPHLKIHECGLPKKMALELFEPFVIAELSKEEN 673 Query: 387 LRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKA 446 T +K +K ++RE+ W+ L++VI+ VLLNRAPTLHR+ IQAFEP LIEG A Sbjct: 674 TEAPQTKVKKYRKELQREDPKAWEKLEKVIQGRVVLLNRAPTLHRMSIQAFEPKLIEGNA 733 Query: 447 IQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDV 506 IQLHPLVC +NADFDGDQMAVH+PL+ AQ EAR LM+S NI+SPA+G+PI +P +D+ Sbjct: 734 IQLHPLVCPPFNADFDGDQMAVHLPLSPAAQAEARLLMLSRYNIISPAHGKPISMPGKDI 793 Query: 507 VLGLYYMTR-----DCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANG 561 V G+YY+T D + + P+EAE Y G LH + ++I + Sbjct: 794 VAGVYYLTMVDKNYDKIEPENIKWKFANPEEAELAYEFGFIKLHEPIIIKINDKA----- 848 Query: 562 ELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFA 621 TT GR I I+P+ L N+ GK I ++ ++ G+ T Sbjct: 849 --------IKTTFGRVIFNSILPEELR--DYNKTFGKNGIKDVVYKTFKTHGIDRTADLL 898 Query: 622 DQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNK 681 D I GF YA SG ++ + D +I KK+EII+ A ++ I++ + GL++ E+Y + Sbjct: 899 DSIKDLGFHYATISGLTISLKDFMISPKKNEIITNAMKKIEYIEKLYDDGLLSDEEKYKE 958 Query: 682 VIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLA 741 I IW + V + L FN +Y+M DSGARG+ Q++QL+ Sbjct: 959 TIKIWTETTNLVQEETYRYLGEN-------------PFNPVYIMVDSGARGNKDQLKQLS 1005 Query: 742 GMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLV 801 GMRGLMA P G IE PI +NFREGL+VL++FISTHGARKG ADTAL+T+++GYLTRRLV Sbjct: 1006 GMRGLMADPSGRTIEIPIISNFREGLSVLEFFISTHGARKGSADTALRTSSAGYLTRRLV 1065 Query: 802 DVAQDLVVTEDDCGTHEGIMMTPVIEGGD-VKEPLRDRVLGRVTAEDVLKPGTADILV-- 858 DV Q +VVTE DCGTHEG+ T + + V E + D + GRV A+D+ +PGT +ILV Sbjct: 1066 DVVQSVVVTEPDCGTHEGVRATLLKSSDNFVVEKIEDFIFGRVLAKDIYEPGTGNILVNP 1125 Query: 859 ------PRNTLLHEQWCDLLEENSVDAVKV-RSVVSCDTDFGVCAHCYGRDLARGHIINK 911 R+T++ ++ L V S++ DL+ G+I Sbjct: 1126 NTNKSYTRDTVILDEDAKFLSNYKKRVNVVEESIL---------------DLSVGNIPEV 1170 Query: 912 GEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSG 971 + A+ I P G V+ + NVK Sbjct: 1171 YAEL----AEDIDTPS-----------GLIPSETEIDWDVVRKLRDAGIKNVKI-----K 1210 Query: 972 KLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQ-VAGGETVANWDPHTMPVITE 1030 I +++ + R K+ +A + + VA + + + ++ V E Sbjct: 1211 LYPIVGSVISEEIVWDKDRKKQ---------IAVEEEQVDVALAKLLEENNIDSVYVRPE 1261 Query: 1031 VSGFVRFT-DMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVL 1089 + T + G +L+ + V +S A + Sbjct: 1262 IYVRSVLTCESEHGVCAKCYGLDLSNHKVVTVGESVGIIAA---------------QSIG 1306 Query: 1090 IPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEAR- 1148 PGT + + F G T DIT GLPRV +LFEAR Sbjct: 1307 EPGTQLTMRTFHTGG-----------------------IATTADITQGLPRVEELFEARK 1343 Query: 1149 RPKEP-AILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERG 1207 + K+P I +++ G V + K+ + + +E +P ++NV G++V G Sbjct: 1344 KTKDPEGIFSKVKGTVVDISNDEPKK--IYIQDELGGIHEYEVPSRVRVNVTVGQKVLPG 1401 Query: 1208 DVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIV 1267 ++ G IL G Y++ E++ VY QGV I+DKH E+I+RQML KA ++ Sbjct: 1402 QSLTSGSLKVRKILEELGPEETATYLLKEIKRVYVQQGVDIHDKHFELIIRQMLNKAEVI 1461 Query: 1268 NAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLG--ITKASL--ATESFIS-- 1321 ++G ++FL G+ V S + NRE+ + ++G + K + + I Sbjct: 1462 DSGDTEFLPGDLVPISLLNKVNREIMEGNAKVEMNRKKIIGRELAKHIIVKNEDGEIVEL 1521 Query: 1322 AASFQETTRVLTEAAVAGKRDELRGLKENVIVGR 1355 AA +E T L E + G+KE VI+ Sbjct: 1522 AAEGEEVTEELLEKLIE------YGIKEVVIMNH 1549 Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 92/218 (42%), Positives = 130/218 (59%), Gaps = 8/218 (3%) Query: 10 AQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYE 69 + + + ++ + +ASP++IR+WS GEVKK ETINYRTFKPERDGLFC RIFGPVKDYE Sbjct: 2 SSSFKRKIASVNVRVASPEVIRNWSNGEVKKAETINYRTFKPERDGLFCERIFGPVKDYE 61 Query: 70 CLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLD 129 C CGKY K+ G +CEKCGV+V RR R GHIELA+P H+W+LK+ PS I LLD Sbjct: 62 CACGKYSGKKYEGTVCEKCGVKVESKDARRRRFGHIELAAPVTHVWYLKNSPSVIATLLD 121 Query: 130 MPLRDIERVLYFESY-------VVIEGGMTNLERQQILTEEQYLDALEEFGDEFD-AKMG 181 M ++DIE ++YF S +V + T + IL + +Y +++ E A + Sbjct: 122 MTVKDIETIVYFGSRRVNERVVIVTDPKNTPFIKGSILNQTEYEIYAQKWDFEVSPAYIV 181 Query: 182 AEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTK 219 E L+ +D E + + + K +++ Sbjct: 182 KEPRSPLVSDIDGEVHIKHEKTHTDRELYWIVVKNISR 219 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 85/389 (21%), Positives = 151/389 (38%), Gaps = 24/389 (6%) Query: 839 VLGRVTAEDVL-KPGTADILVPRNTLLHEQWCDLLEENSVDA------VKVRSVVSCDTD 891 ++G V +E+++ + + LLEEN++D+ + VRSV++C+++ Sbjct: 1214 IVGSVISEEIVWDKDRKKQIAVEEEQVDVALAKLLEENNIDSVYVRPEIYVRSVLTCESE 1273 Query: 892 FGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAES--- 948 GVCA CYG DL+ ++ GE++G+IAAQSIGEPGTQLTMRTFH GG A+ A Sbjct: 1274 HGVCAKCYGLDLSNHKVVTVGESVGIIAAQSIGEPGTQLTMRTFHTGGIATTADITQGLP 1333 Query: 949 SIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRT--KESYKVPYGAVLAKG 1006 ++ + K + + + + V+ N E K I Y+VP + Sbjct: 1334 RVEELFEARKKTKDPEGIFSKVKGTVVDISNDEPKKIYIQDELGGIHEYEVPSRVRVNVT 1393 Query: 1007 DGEQVAGGETVANWDPHTMPVITEVSGF---VRFTDMIDGQTITRQTDELTGLSSLVVLD 1063 G++V G+++ + ++ E+ I + + D L++ Sbjct: 1394 VGQKVLPGQSLTSGSLKVRKILEELGPEETATYLLKEIKRVYVQQGVDIHDKHFELIIRQ 1453 Query: 1064 SAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLAR 1123 + G+ V I + + + G A V++ I G LA+ Sbjct: 1454 MLNKAEVIDSGDTEF----LPGDLVPISLLNKVNREIMEGNAKVEMNRKKII--GRELAK 1507 Query: 1124 IPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGS 1183 +I ++ E K ++ V K K I P + Sbjct: 1508 HIIVKNEDGEIVELAAEGEEVTEELLEK---LIEYGIKEVVIMNHDKEKEVYQILPKETV 1564 Query: 1184 DPYEEMIPKWRQLNVFEGERVERGDVISD 1212 ++ + +EG + Sbjct: 1565 KYRRRLLRITQASLEYEGWLSAASFQQTQ 1593 Score = 57.4 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 51/325 (15%), Positives = 108/325 (33%), Gaps = 73/325 (22%) Query: 950 IQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGE 1009 I G++++ + + + + ++ +PYG + E Sbjct: 253 IFAPFDGTVEVDEISETIT-------------INPLPTSKNNPITFSLPYGVRALVKNNE 299 Query: 1010 QVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTA 1069 +V G+ + + ++ VSG +R++ ++ + + E+ Sbjct: 300 KVKKGQQLTT-ETILNSIVAPVSGTIRYSKQLNLRPLENGLYEV---------------- 342 Query: 1070 GGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESG 1129 + I QY + A +Q+EDG + +GD LA Sbjct: 343 -------------LTNGVIYIENVQNIKQYPVFEGAPIQVEDGQMVKAGDILADRFLFEE 389 Query: 1130 GTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRL-VITPVDGSDPYEE 1188 I LF P G+ ++ + + + VIT +D S E Sbjct: 390 EKLTIEE-----YKLFSEYYP----------GMFVVEEQIENDKPIMVITDIDPSVSEET 434 Query: 1189 MIPKWRQLNVFEGE---RVERGDVISD-GPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQ 1244 I K + + + E R+ G + ++ G A +L + + I E++ + + Sbjct: 435 GIKKGQVITQQDYEAYSRIYPGKIEAETGAMAIKKLLEKIDLEVMKAEIEAELKKIPKS- 493 Query: 1245 GVKINDKHIEVIVRQMLRKATIVNA 1269 V +++L+K IV Sbjct: 494 ---------SVRAKKLLKKMKIVKD 509 >UniRef50_Q1J0P7 DNA-directed RNA polymerase subunit beta' n=11 Tax=Bacteria RepID=RPOC_DEIGD Length = 1537 Score = 837 bits (2161), Expect = 0.0, Method: Composition-based stats. Identities = 410/960 (42%), Positives = 576/960 (60%), Gaps = 84/960 (8%) Query: 175 EFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKP 234 +F+AKMGAEA++ LL +DL+Q +L E++ + NS KR K KR++++ AF +SGN P Sbjct: 458 DFEAKMGAEAVKELLDDLDLDQLEAELSEQMKD-NSRHKRAKARKRLEVVRAFKRSGNHP 516 Query: 235 EWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRN 294 WMIL +PV+PPDLRP+V +DGGRFATSDLNDLYRR+INRNNRLK+L+ APD+I+RN Sbjct: 517 SWMILETVPVMPPDLRPMVQVDGGRFATSDLNDLYRRLINRNNRLKKLIGQGAPDMIIRN 576 Query: 295 EKRMLQEAVDALLDNGRRGRAITGSNK-RPLKSLADMIKGKQGRFRQNLLGKRVDYSGRS 353 EKRMLQEAVDAL+DNGRRG +T R L+SL D++ GKQGRFRQNLLGKRVDYSGRS Sbjct: 577 EKRMLQEAVDALIDNGRRGSPVTNPGSDRSLRSLTDLLGGKQGRFRQNLLGKRVDYSGRS 636 Query: 354 VITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAV---VWD 410 VI VGP L+LHQCG+PK+MALELFKPF++ LE +G T IK A+KM+ER VWD Sbjct: 637 VIVVGPQLKLHQCGVPKRMALELFKPFLFKVLEEKGEVTNIKQARKMLERYRDTRDSVWD 696 Query: 411 ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHV 470 L+EVI + VLLNRAPTLHRLGIQAFEPVL+EG++IQLHPLVC A+NADFDGDQMA+HV Sbjct: 697 ALEEVIEDKVVLLNRAPTLHRLGIQAFEPVLVEGQSIQLHPLVCEAFNADFDGDQMAIHV 756 Query: 471 PLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGP 530 PL+ +AQ EAR M+S +N+LSPANGEP + PS+D++LG++ +T+ + G G Sbjct: 757 PLSAQAQAEARIQMLSAHNLLSPANGEPNVKPSRDIILGIFTLTQLRKDNLGAGSEFANE 816 Query: 531 KEAERLYRSGLASLHARVKVRITEYEK--------------------DANGELVAKTSLK 570 ++A + G +L+ ++V E + + + + L Sbjct: 817 QDALKALDEGRVALNTPIRVNGVETSPGRLKYVFSSPDEAIMAVDRGEIDYQDHVRIRLN 876 Query: 571 ----DTTVGRAILWMIVPKGLPYSI--------VNQALGKKAISKMLNTCYRILGLKPTV 618 +T+ GR + +V + L ++ A K ++ M+ CY+ LG++ T Sbjct: 877 GTVYETSAGRVMFRRLVQEALGAQGHLVDTLVNLDTAYEKDSLKDMVMACYKELGIEATA 936 Query: 619 IFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGER 678 D + +GF + SG ++GIDD+V+P K E+++EA+ ++A I++ ++ G +T ER Sbjct: 937 GLLDALKDSGFKLSTISGITIGIDDIVLPPNKRELLAEADEKLAAIEQNYEFGFMTDEER 996 Query: 679 YNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIR 738 Y +V+ +W D V A+ +N FN +++M+ SGARG+ QIR Sbjct: 997 YKQVVQLWNDTTDEVKNAVFENFSRN------------YPFNPLWIMSQSGARGNPQQIR 1044 Query: 739 QLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTR 798 QLAGMRGLMA+PDGS IE PI A+FREGL VL+YFISTHGARKG ADTAL+TA+SGYLTR Sbjct: 1045 QLAGMRGLMARPDGSTIEVPIRASFREGLTVLEYFISTHGARKGGADTALRTADSGYLTR 1104 Query: 799 RLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDR--------VLGRVTAEDVLK 850 +LVDVA ++VV + DCGT + P+ + R R + GR DV + Sbjct: 1105 KLVDVAHEVVVRDVDCGTT-DYTVMPLGTTDERTGEWRTRKGSEIETAIYGRTLTADV-E 1162 Query: 851 PGTADILVPRNTLLHEQWCDLL--EENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHI 908 ++ P +L + + + ++ V VR+ ++C GVC CYG DL++ Sbjct: 1163 LSDGRVI-PAGQMLSLEDVKAITRDAKAIGEVFVRTPLNCRVRAGVCQKCYGYDLSQAKP 1221 Query: 909 INKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVN 968 ++ GEA+GV+AA+SIGEPGTQLTMRTFH GG A G ++ + Sbjct: 1222 VSLGEAVGVVAAESIGEPGTQLTMRTFHTGGVAGGGDITM-------GLPRVIELFEARK 1274 Query: 969 SSGKLVITSRNTELKLIDEFGRTKESY-------------KVPYGAVLAKGDGEQVAGGE 1015 + V+ R+ +++ +E R K+ L DG+ V G+ Sbjct: 1275 PKTQAVVADRDGVVRIEEEEERYLVRIEAEDEAFSSKTPMKISKSLRLIVRDGDHVEAGQ 1334 Query: 1016 TVAN--WDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKD 1073 + +PH + + + R+ + Q ++ V++ R D Sbjct: 1335 PLTRGAINPHDLLLYKDTDAAQRYLVEEVQRVYRSQGVKVHDKHIEVIVRQMLRYVEITD 1394 Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 129/300 (43%), Positives = 169/300 (56%), Gaps = 6/300 (2%) Query: 1075 RPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDTLARIPQESGGT-- 1131 R L G G D+ + V + I G L +GG Sbjct: 1196 RTPLNCRVRAGVCQKCYGYDLSQAKPVSLGEAVGVVAAESIGEPGTQLTMRTFHTGGVAG 1255 Query: 1132 -KDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDG-SDPYEEM 1189 DIT GLPRV +LFEAR+PK A++A+ G+V +E + + + S Sbjct: 1256 GGDITMGLPRVIELFEARKPKTQAVVADRDGVVRIEEEEERYLVRIEAEDEAFSSKTPMK 1315 Query: 1190 IPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKIN 1249 I K +L V +G+ VE G ++ G PHD+L + A RY+V EVQ VYR QGVK++ Sbjct: 1316 ISKSLRLIVRDGDHVEAGQPLTRGAINPHDLLLYKDTDAAQRYLVEEVQRVYRSQGVKVH 1375 Query: 1250 DKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGI 1309 DKHIEVIVRQMLR I + G +D LEG+ VE V AN L GK A++ LLGI Sbjct: 1376 DKHIEVIVRQMLRYVEITDGGDTDLLEGQTVERWEVDQANDAL-PEGKTPASWKPVLLGI 1434 Query: 1310 TKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDR 1369 TK+SL T+S++SAASFQ TT VLTEA++ G+ DEL GLKENVI+G+LIPAGTG ++ Sbjct: 1435 TKSSLTTKSWLSAASFQHTTHVLTEASMRGQVDELIGLKENVILGKLIPAGTGLTTVREM 1494 Score = 223 bits (567), Expect = 6e-56, Method: Composition-based stats. Identities = 93/175 (53%), Positives = 126/175 (72%), Gaps = 5/175 (2%) Query: 15 EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74 ++F ++IA+ASP IR WSFGEV+KPETINYRT KPER+GLF RIFGP+KDYEC CGK Sbjct: 2 KDFSKVRIAIASPAKIREWSFGEVEKPETINYRTLKPEREGLFDERIFGPIKDYECACGK 61 Query: 75 YKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRD 134 YKR ++ G +CE+CGVEVT +KVRR RMGHI+LA+P AHIW++K PS+IG LLD+ Sbjct: 62 YKRQRYEGKVCERCGVEVTSSKVRRYRMGHIDLATPAAHIWYVKDTPSKIGTLLDLSAAQ 121 Query: 135 IERVLYFESYVVIEGGMT-----NLERQQILTEEQYLDALEEFGDEFDAKMGAEA 184 +E+VLYF S++V + L R ++L++++Y + + + G EA Sbjct: 122 LEKVLYFSSFLVTDPRNAQKDGRPLRRGELLSDDEYRELRFGRQETYTLPSGTEA 176 >UniRef50_C4LL70 DNA-directed RNA polymerase subunit beta' n=65 Tax=Actinobacteridae RepID=RPOC_CORK4 Length = 1332 Score = 834 bits (2155), Expect = 0.0, Method: Composition-based stats. Identities = 412/929 (44%), Positives = 567/929 (61%), Gaps = 69/929 (7%) Query: 155 ERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKR 214 +Q I+ E Y + ++ + D F MGAEAIQ L+K+ DLE E E+L E + + + + Sbjct: 231 PKQMIVDETIYSELVDRYEDYFTGGMGAEAIQTLIKNFDLEAEAEKLSEVIRDGKGQKQV 290 Query: 215 KKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVIN 274 + L KR++++ AF++SGN P M+L +PV+PP+LRP+V LDGGRFATSDLNDLYRRVIN Sbjct: 291 RAL-KRLRVVAAFLRSGNDPAAMVLDAIPVIPPELRPMVQLDGGRFATSDLNDLYRRVIN 349 Query: 275 RNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGK 334 RNNRLKR++DL AP+IIV NEKRMLQE+VDAL DNGRRGR +TG RPLKSL+D++KGK Sbjct: 350 RNNRLKRMIDLGAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGK 409 Query: 335 QGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI 394 QGRFRQNLLGKRVDYSGRSVI VGP L+LHQCGLPK MALELFKPF+ +L + A I Sbjct: 410 QGRFRQNLLGKRVDYSGRSVIIVGPQLKLHQCGLPKLMALELFKPFVMKRLVEKSYAQNI 469 Query: 395 KAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVC 454 ++AK+MVER+ VWD+L+E I EHPV+LNRAPTLHRLGIQAFEPVL+EGKAIQLHPL C Sbjct: 470 RSAKRMVERQRPEVWDVLEEAIAEHPVMLNRAPTLHRLGIQAFEPVLVEGKAIQLHPLAC 529 Query: 455 AAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT 514 A+NADFDGDQMAVH+PL+ EAQ EAR LM+++NNILSPA+G+P+ +P D+V GLY++T Sbjct: 530 EAFNADFDGDQMAVHLPLSAEAQAEARVLMLASNNILSPASGKPLAMPRLDMVTGLYFLT 589 Query: 515 RDCVNAK--GEGMV------------LTGPKEAERLYRSGLASLHARVKVRITEYEKD-- 558 + + GEG + EA G+ L A ++VRI+ Sbjct: 590 LEKSEDQLGGEGAYHEADENGPKRGTYSSFAEALMARDRGVLGLQAPIEVRISHLRPPED 649 Query: 559 ------ANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRIL 612 +G + TT+GR + ++P Y VN + KKA + ++N Sbjct: 650 IEAELFPDGWQRGQKWTAHTTLGRIMFNELLP--WNYPFVNGVMAKKAQAVIINDLAARY 707 Query: 613 GLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGL 672 + D++ GF +A RS ++ +DD+++ K EI+ E + A I+++ G Sbjct: 708 PMITVAQTVDKMKDAGFYWATRSCVTISMDDVLVLPNKEEILQRYEKQAATIEKKLARGK 767 Query: 673 VTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARG 732 + ERY ++D+W D V +++ + N I M+ SGA G Sbjct: 768 INNEERYRSLVDLWKECTDFVGESVEKIYPDD---------------NPIPMIVKSGAAG 812 Query: 733 SAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTAN 792 + QI LAGM+G++ G I PI +FREGL+VL+YF ++HG+RKGLADTAL+TA+ Sbjct: 813 NMRQIWTLAGMKGMVTNSRGDYITRPIKTSFREGLSVLEYFNNSHGSRKGLADTALRTAD 872 Query: 793 SGYLTRRLVDVAQDLVVTEDDCGTHEGIMM---TPVIEGG-------DVKEPLRDRVLGR 842 SGYLTRRLVDVAQD++V EDDCGT +G+ + PV++ E L ++GR Sbjct: 873 SGYLTRRLVDVAQDVIVREDDCGTRKGLEVDVAKPVLDAEGNETGEFTRAEFLETALIGR 932 Query: 843 VTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRD 902 A+D + D++ R + + + V VR+V+ C+T GVCA CYGR Sbjct: 933 YLAKDAVNDN-GDVIYERGAFVGDAEAKKMVAEGVRTATVRTVMMCETATGVCATCYGRS 991 Query: 903 LARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLS- 961 +A G ++ GEA+G++AAQSIGEPGTQLTMRTFH G +V+ ++ Sbjct: 992 MATGQKVDIGEAVGIVAAQSIGEPGTQLTMRTFHQG-GVGGDITGGLPRVQELFEARVPK 1050 Query: 962 NVKSVVNSSGKL-----------VITSRNTELKLIDEFGRTKESYKV---PYGAVLAKGD 1007 N + ++ G + IT N E +++ E ++ V P G Sbjct: 1051 NQAPIASTEGTIKLEDDGNFYTLTITPDNGEDEVVYEKLSKRQGLAVTQEPGGFEHQLRT 1110 Query: 1008 GEQVAGGETV--ANWDPHTMPVITEVSGF 1034 G+ V G+ + DPH + + V+G Sbjct: 1111 GDHVVTGQPLLRGAPDPHEVLRVEGVTGV 1139 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 124/353 (35%), Positives = 184/353 (52%), Gaps = 34/353 (9%) Query: 1073 DLRPALKIVDAQGNDVLIPGTDM-PAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGT 1131 +R + A G G M Q G+A+ + G L GG Sbjct: 970 TVRTVMMCETATGVCATCYGRSMATGQKVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1029 Query: 1132 KDITGG-LPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMI 1190 G LPRV +LFEAR PK A +A G + ++ L ITP +G D Sbjct: 1030 GGDITGGLPRVQELFEARVPKNQAPIASTEGTIKL-EDDGNFYTLTITPDNGEDEVVYEK 1088 Query: 1191 ------------PKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQ 1238 P + + G+ V G + G PH++LR+ GV V ++++ +VQ Sbjct: 1089 LSKRQGLAVTQEPGGFEHQLRTGDHVVTGQPLLRGAPDPHEVLRVEGVTGVQKHLIEQVQ 1148 Query: 1239 DVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKV 1298 VYR QGV I+DKHIE+IVRQMLR+ T+V++GS++ L G ++ + + N+ + NG Sbjct: 1149 KVYRDQGVAIHDKHIEIIVRQMLRRLTVVDSGSTELLPGSLIDRNEARAINKAVATNGGE 1208 Query: 1299 GATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIP 1358 GA + ++++GITKASLATES++SAASFQETTRVLT+AA+ + D+L GLKENVI+G+LIP Sbjct: 1209 GAAFRQEIMGITKASLATESWLSAASFQETTRVLTDAAINKRSDKLIGLKENVIIGKLIP 1268 Query: 1359 AGTGYAYHQDRMRRRAAGEAPAAPQVTAEDASASLAELL----NAGLGGSDNE 1407 AGTG + +++ ++ E + A+ + G G + Sbjct: 1269 AGTGISRYRN---------------ISVEPTEEARAQAFSMNTSYGDGFYGED 1306 Score = 228 bits (582), Expect = 9e-58, Method: Composition-based stats. Identities = 98/235 (41%), Positives = 144/235 (61%), Gaps = 15/235 (6%) Query: 17 FDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYK 76 FD ++I LA+ D IR WS GEVKKPETINYRT KPE+DGLFC RIFGP +D+EC CGKYK Sbjct: 7 FDELRIGLATADDIRRWSHGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWECACGKYK 66 Query: 77 RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIE 136 R++++G++CE+CGVEVT++KVRRERMGHIELA+P HIW+ K +PSR+G LLD+ +D+E Sbjct: 67 RVRYKGIVCERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDLAPKDLE 126 Query: 137 RVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQ 196 +++YF + ++ Q E +E + D ++ AE Q L + + E Sbjct: 127 KIIYFAANIITSVDEEARHTDQETLEADIFMEKKEVEADRDEEL-AERQQKLEEDLK-EL 184 Query: 197 ECEQLREELNETNS-----------ETKRKKLTKRIKLLEAFVQSGNKPEWMILT 240 E + + E +++ + ++ F++ P+ MI+ Sbjct: 185 ESNGAKADAKRKVQNAAEREMRHIRERAEREIDRLDEIWNTFIKLA--PKQMIVD 237 >UniRef50_B1L934 DNA-directed RNA polymerase subunit beta' n=8 Tax=Bacteria RepID=RPOC_THESQ Length = 1690 Score = 805 bits (2079), Expect = 0.0, Method: Composition-based stats. Identities = 448/1303 (34%), Positives = 667/1303 (51%), Gaps = 153/1303 (11%) Query: 152 TNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNE-TNS 210 T L+ I+TE +Y L+ + ++ A GA+AI+ LL+++DLE ++ EL + +S Sbjct: 435 TGLKVGDIVTENEYEAYLQIYPEKIVADAGAQAIKKLLQNLDLEALQAEIEAELKKLPSS 494 Query: 211 ETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYR 270 +K KL +R+K+++ F++SGNKPEWM+L V+PV+PPDLRP++ ++GGRFAT+DLN+LYR Sbjct: 495 SSKAIKLRRRLKMVKDFLKSGNKPEWMVLEVVPVIPPDLRPMIQIEGGRFATTDLNELYR 554 Query: 271 RVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRA-------ITGSNKRP 323 R+INRNNRLK+LL+L AP+II+RNEKRMLQEAVDAL+ NG + N RP Sbjct: 555 RLINRNNRLKKLLELGAPEIILRNEKRMLQEAVDALIHNGSDSEGKRSRRAVLKDRNGRP 614 Query: 324 LKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYG 383 LKSL D++KGK+GRFR+NLLGKRVDYSGR+VI VGP L++HQCG+PKKMA+ELFKPF+ Sbjct: 615 LKSLTDLLKGKKGRFRRNLLGKRVDYSGRAVIVVGPNLKIHQCGIPKKMAMELFKPFVLA 674 Query: 384 KLELRGLA--TTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVL 441 KL G + T K K ++E+E W++L+EVI+ VLLNRAPTLHR+ IQAFEP L Sbjct: 675 KLLGEGSSSKTMRKVKKAIIEKEMPEAWEVLEEVIKGSVVLLNRAPTLHRMSIQAFEPKL 734 Query: 442 IEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIV 501 +EG AIQLHP+VC +NADFDGDQMAVHVPL+ AQ EAR LM+S NI+SPA+G+PI + Sbjct: 735 VEGNAIQLHPVVCPPFNADFDGDQMAVHVPLSAAAQAEARFLMLSRYNIISPAHGKPISL 794 Query: 502 PSQDVVLGLYYMTR-----DCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYE 556 P+QD+++G YY+T D + + + P+EA Y G LH + +++ Sbjct: 795 PTQDIIIGSYYLTTVGKEFDSLKEEDVKWKFSSPEEAMLAYHLGFIKLHTPILIKVV--- 851 Query: 557 KDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKP 616 NGE TT+GR I I+P+ L N+ KK I+ ++ ++ G+ Sbjct: 852 --INGE----EKRIKTTLGRVIFNGILPEDLR--DYNRIFDKKQINALVYETFKRHGIDR 903 Query: 617 TVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAG 676 D I GF YA SG ++ + D+ IP ++ EI+ + +V I+E ++ G +T Sbjct: 904 AADLLDDIKDIGFHYATVSGLTLSLKDLKIPPERDEILRKTWEKVRIIEENYEKGFLTEE 963 Query: 677 ERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQ 736 +R +++I +W + + ++K L + FN IYMM +SGARG+ Q Sbjct: 964 QRKSEIIRLWMSVTEEITKLTSKTLAED-------------PFNPIYMMVNSGARGNIDQ 1010 Query: 737 IRQLAGMRGLMAK-------------------PDGSIIETPITANFREGLNVLQYFISTH 777 ++QLAG+RGLM K + + P+ N REG+++LQ+FIST+ Sbjct: 1011 VKQLAGIRGLMIKAYDPRSREIKSKIFKGQAIHEALTFDYPVDKNLREGVDILQFFISTY 1070 Query: 778 GARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRD 837 GARKG DTA+ T+ +GYLTRRLVDVAQ + V+E DCGTHEGI +I+ G V E + + Sbjct: 1071 GARKGQVDTAMNTSFAGYLTRRLVDVAQSVTVSEPDCGTHEGIRAMDLIKEGTVVEKMNE 1130 Query: 838 RVLGRVTAEDVLKPGTADIL--------VPRNTLLHEQWCDLLEENSVDAVKVRSVVSCD 889 + GRV A DVL P T ++L RNT+L + + L VR Sbjct: 1131 FLFGRVLARDVLDPETKEVLKNPETGKEYTRNTMLTDDDANFLASYKKMVDVVRY----- 1185 Query: 890 TDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIG--EPGTQLTMRTFHIGG-------- 939 D+ + N I A+ +G E GT+LT Sbjct: 1186 ---------EEIDITELSLPNMYAEI----AEPVGEYEEGTELTWDVVKAAKNEGKYRIK 1232 Query: 940 -----AASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTEL------KLIDEF 988 AE KG +L + V+N ++ E ++ Sbjct: 1233 VKVYPVVGTVYAEEEPLYDKKGERQLLVYQEVINEIVAKMLEENGIEKVPVRPDIIVRSP 1292 Query: 989 GRTKESYKV---PYG------AVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTD 1039 + Y V YG ++ G+ + +++ V G + +D Sbjct: 1293 LTCESEYGVCAACYGMDLSNHKIVNVGEAVGIVAAQSIGEPGTQLTMRTFHVGGVMGASD 1352 Query: 1040 MIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQY 1099 ++ G T +T E + L VD D+ + Y Sbjct: 1353 IVSGLTTVEKTFEPYAFLREEKSGGKKEIRKYYGSEAILCEVDGFVKDIATDESGRTVIY 1412 Query: 1100 F-----------LPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEAR 1148 +P +A V++E G ++ G+TL ++ + + + Sbjct: 1413 IEDYAGNIHAYKVPKRAKVRVEKGQKVLRGETLTSGAIVWWKLLELESEKGVMTAMNLLK 1472 Query: 1149 RPKEPAI---LAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVE 1205 K + ++ + ++ P D ++++P + Sbjct: 1473 IIKNAYVQQGVSIHDKHFEIIFKQMLSMATIVDPGDSDYLPDQLVPLV--------DIKR 1524 Query: 1206 RGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQG--VKINDKHIEVIVRQMLRK 1263 I +G + + + + I+ E ++ G V++ K EV ++L+K Sbjct: 1525 FNREILEGNAKVEENRKWVIGKTLAKRIIAETEE-----GELVELAQKGDEV-TEELLKK 1578 Query: 1264 ATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAA 1323 I+ AG + + E +V + K Y R LL + KA+L ++SAA Sbjct: 1579 --IIEAGIKEI---DVFEKDKV----VTYQILPKEPIKYKRRLLSLKKAALNYPGWLSAA 1629 Query: 1324 SFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYH 1366 +F+ET VLT AA+ GK D L GLKENVIVG+LIPAGTG Sbjct: 1630 AFEETAWVLTAAAIEGKVDPLIGLKENVIVGQLIPAGTGLDVF 1672 Score = 215 bits (548), Expect = 9e-54, Method: Composition-based stats. Identities = 95/213 (44%), Positives = 133/213 (62%), Gaps = 8/213 (3%) Query: 15 EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74 + AI+I +ASP++IRSWS GEVKKPETINYRTFKPERDGLFC RIFGPVKDYEC CGK Sbjct: 8 RKIKAIQIKIASPEVIRSWSGGEVKKPETINYRTFKPERDGLFCERIFGPVKDYECACGK 67 Query: 75 YKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRD 134 YK K+ G +CE+CGV V + RR+RMGHIELA+P HIW+L+S+PS +G LL+M D Sbjct: 68 YKGKKYEGTVCERCGVRVESREARRKRMGHIELAAPAVHIWYLESIPSVLGTLLNMSTSD 127 Query: 135 IERVLYFES-------YVVIEGGMTNLERQQILTEEQYLDALEEFG-DEFDAKMGAEAIQ 186 +E ++Y+ S ++V + T + ++ E +Y +++ D A + Sbjct: 128 LENIIYYGSRRVIERVFIVTDPKDTPFSQGDVIYETEYRIYRKKWDFDVEQAFVVKNPKS 187 Query: 187 ALLKSMDLEQECEQLREELNETNSETKRKKLTK 219 +L +D E + + + K +T+ Sbjct: 188 PVLSDIDGEVTLKTEKSITGREITWIIVKNITR 220 Score = 61.3 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 58/346 (16%), Positives = 109/346 (31%), Gaps = 77/346 (22%) Query: 946 AESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAK 1005 E + VKN S LS++ V + IT R ++ T+ ++ V G +L Sbjct: 176 VEQAFVVKNPKSPVLSDIDGEVTLKTEKSITGREITWIIVK--NITRATHTVLPGMILVV 233 Query: 1006 GDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSA 1065 DG++V G+ + + PV G V ++ + T+ Sbjct: 234 KDGQEVEKGQDLTK-EMTIDPVYAPFDGHVEIDELSNTITLK------------------ 274 Query: 1066 ERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIP 1125 L D P + +P A + + +G ++ GD + Sbjct: 275 ----------------------PLTTSKDQPVVFTVPYGAKILVSNGQKVKKGDQITTST 312 Query: 1126 QESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDP 1185 I+G R I A G + VI + Sbjct: 313 SLPSVKSSISG---------TVRFGSNLNIRALEDGNFEVLSTGEVYVEQVI------EE 357 Query: 1186 YEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDIL-----RLRGVHAVTRYIVNEVQDV 1240 + + + + V G++V++GD ++D + L ++ H T + V E + Sbjct: 358 RKYPVFEGALVYVNNGDQVKKGDHLADRFLFEEEYLSATEYKIFESHYPTMFDVEERTE- 416 Query: 1241 YRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVK 1286 ND+ I VI + + G+ V + + Sbjct: 417 --------NDRPIVVITD-----IDPEVSKETGLKVGDIVTENEYE 449 Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 45/295 (15%), Positives = 96/295 (32%), Gaps = 67/295 (22%) Query: 942 SRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGA 1001 ++ + G +++ + + + K + TS++ + VPYGA Sbjct: 246 TKEMTIDPVYAPFDGHVEIDELSNTITL--KPLTTSKDQPVVFT-----------VPYGA 292 Query: 1002 VLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVV 1061 + +G++V G+ + V + +SG VRF ++ + + E+ + V Sbjct: 293 KILVSNGQKVKKGDQITT-STSLPSVKSSISGTVRFGSNLNIRALEDGNFEVLSTGEVYV 351 Query: 1062 LDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTL 1121 E +Y + A+V + +G Q+ GD L Sbjct: 352 EQVIE-----------------------------ERKYPVFEGALVYVNNGDQVKKGDHL 382 Query: 1122 A-RIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPV 1180 A R E +FE+ P + + T+ R +V+ Sbjct: 383 ADRFLFEEEYLS------ATEYKIFESHYP----------TMFDVEERTENDRPIVVITD 426 Query: 1181 DGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVN 1235 + ++ + G+ V + + P I+ G A+ + + N Sbjct: 427 IDPEV-------SKETGLKVGDIVTENEYEAYLQIYPEKIVADAGAQAIKKLLQN 474 >UniRef50_A7BVC2 DNA-directed RNA polymerase n=1 Tax=Beggiatoa sp. PS RepID=A7BVC2_9GAMM Length = 761 Score = 775 bits (2002), Expect = 0.0, Method: Composition-based stats. Identities = 350/750 (46%), Positives = 509/750 (67%), Gaps = 17/750 (2%) Query: 632 AARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAAND 691 A R+G ++ +++M+IP +K ++I+EA ++ +IQ+Q+Q L+T +RYNK+ID+W +D Sbjct: 2 ATRAGITLSMEEMIIPSEKPKLINEALTKIEDIQKQYQKALITNNQRYNKIIDLWTKTHD 61 Query: 692 RVSKAMMDNLQTETVINRDGQEEKQVSF--NSIYMMADSGARGSAAQIRQLAGMRGLMAK 749 +++ A++++L + ++ N++YMM D+G R + I QL+GMRGLM K Sbjct: 62 KMATAVLNHLSEKPRQTAKYRQASNHPLPENNLYMMIDAGIR-NLMSISQLSGMRGLMTK 120 Query: 750 PDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVV 809 PDGSI+E PITANFREGL+ QYFISTHG RKGLAD ALKTAN+GYLTRRLVDVAQD+++ Sbjct: 121 PDGSILEIPITANFREGLDAHQYFISTHGTRKGLADMALKTANAGYLTRRLVDVAQDVII 180 Query: 810 TEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWC 869 + +CGT +GI MT + + + + DR+ GRVTAED+ + +V TLL E+W Sbjct: 181 AKKNCGTTQGITMTALTKNDLLIKTFSDRIRGRVTAEDIYLQKSQKPVVKAGTLLDEKWI 240 Query: 870 DLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQ 929 + LE+ + +KVRS ++C ++ GVCA CYGRDLA+G +I+ GEA+GVIAAQSIGE GTQ Sbjct: 241 EKLEQWKIKQIKVRSPITCQSEHGVCALCYGRDLAQGQLIHVGEAVGVIAAQSIGEAGTQ 300 Query: 930 LTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSV---------VNSSGKLVITSRNT 980 LTMRT+ G A + I++ KG +K ++K + + ++ S+ Sbjct: 301 LTMRTYW-NGKIKHTATINHIKINAKGKVKFHHLKLIEQNATPNEKKKAKKPFIVVSQAG 359 Query: 981 ELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDM 1040 E+ ++D+ G+ +E +K+PYGA+L+ DG+QV G+ +A+WDP+ ++TEV+G++RF D+ Sbjct: 360 EISILDKAGQEQERHKIPYGAILSINDGDQVIVGQRIADWDPYNDLLVTEVTGYIRFVDI 419 Query: 1041 IDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYF 1100 ++G T+ +TD TGL+ L+V R K L+P + IVD N++ GT YF Sbjct: 420 VEGTTVHSETDPKTGLTILIVKAPKLRPTYAKKLQPQINIVDKNNNELTFAGTSKKVTYF 479 Query: 1101 LPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEIS 1160 LP I+ +++G ++++GD +A++P E +DIT GL RVADLFEAR PKEPAILA+ S Sbjct: 480 LPAHTIINIKEGAKVNAGDIIAKLPFEPPKIRDITDGLLRVADLFEARIPKEPAILAQCS 539 Query: 1161 GIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDI 1220 G VSFGKETK K R +IT +G E IPKWR +NV G++V+ G+++ +G PHDI Sbjct: 540 GTVSFGKETKTKHRFIITDEEGQQE-EHPIPKWRFINVSSGQQVDLGEMVVNGILNPHDI 598 Query: 1221 LRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQV 1280 LRL+G A+ +Y++NE+Q++Y G+KINDKH EVI+RQMLR TI++ G + F GE V Sbjct: 599 LRLKGPLALVKYLINEMQEIYSSYGIKINDKHFEVIIRQMLRTLTIIDPGDTPFFSGEHV 658 Query: 1281 EYSRVKIANRELEANG---KVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAV 1337 ++++ N+ + AT+ +LLGITK SL+TESFISAASF + RVL +A+ Sbjct: 659 TRNQLETENQRIAKQSPRFGRLATWEANLLGITKTSLSTESFISAASFMDAARVLLASAI 718 Query: 1338 AGKRDELRGLKENVIVGRLIPAGTGYAYHQ 1367 GK DELRG KENVI+GRLIPAGTG + Sbjct: 719 QGKYDELRGFKENVILGRLIPAGTGLKKKE 748 >UniRef50_A9BF32 DNA-directed RNA polymerase subunit beta' n=1 Tax=Petrotoga mobilis SJ95 RepID=RPOC_PETMO Length = 1643 Score = 773 bits (1997), Expect = 0.0, Method: Composition-based stats. Identities = 446/1316 (33%), Positives = 664/1316 (50%), Gaps = 126/1316 (9%) Query: 146 VIEGGMTNLERQQILTEEQYLDALEEFG--DEFDAKMGAEAIQALLKSMDLEQECEQLRE 203 V+ + + EE + + + ++F+ GAEAIQ LL +DLE +L Sbjct: 364 VLNELQEFGVKDLVAKEEDGTEKIFQINRYEKFEYGYGAEAIQKLLTKIDLEVLKARLES 423 Query: 204 ELNET-NSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFAT 262 EL + K K+ +R+KL++ F++SGN+PEW+I ++PV+PPDLRPL+ +DGGRFA Sbjct: 424 ELEKLDRKSQKSVKILRRLKLVKDFIKSGNQPEWLITNIIPVIPPDLRPLIQIDGGRFAA 483 Query: 263 SDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKR 322 +DLNDLYR+VINRNNRL++LL++ AP+IIVRNEKR+LQ+AVD+L NGR G+ +T N+R Sbjct: 484 TDLNDLYRKVINRNNRLRKLLEMEAPEIIVRNEKRILQQAVDSLFYNGRVGKPMTDRNRR 543 Query: 323 PLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIY 382 PL+SL D++KGK+GRFR+NLLGKRVDYSGR+VI VGP L++H+CGLPKKMALELFKPF+ Sbjct: 544 PLRSLTDLLKGKKGRFRRNLLGKRVDYSGRAVIAVGPDLKIHECGLPKKMALELFKPFVL 603 Query: 383 GKLELRGL---ATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEP 439 +L + K K ++E+E W++L+EVI+ HPVLLNRAPTLHR+ IQAF P Sbjct: 604 AELLRDSNVASKSARKFKKTIIEKEMPEAWEVLEEVIKGHPVLLNRAPTLHRVSIQAFIP 663 Query: 440 VLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPI 499 LIEG AI+LHPLVC +NADFDGDQMA+H+PL+ AQ E++ LM+S NI+SPANG+P+ Sbjct: 664 KLIEGNAIRLHPLVCPPFNADFDGDQMAIHIPLSNIAQAESKFLMLSRYNIISPANGKPL 723 Query: 500 IVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERL---------YRSGLASLHARVKV 550 +P +D++ G YY+T ++ + L P + L + L + +A + Sbjct: 724 SMPGKDIIAGAYYLT---MHEDEKFKNLKVPTKVSELGKNGYVKHIFSEDLEATYAYEYL 780 Query: 551 RITEYE-KDANGELVAKT----------------SLKDTTVGRAILWMIVPKGLPYSIVN 593 +I + + +G+L+ K S+ TT+G+ I VP+ L Sbjct: 781 KIVDSDIYLQDGKLIWKKSDLPLHEPVAFRYKDGSILKTTIGKIIFNEEVPEDLR--DYT 838 Query: 594 QALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEI 653 Q + KK + +++ + G+ T D I GF YA SG ++ I D+++ K+ E+ Sbjct: 839 QKMDKKNLKELIFNTFEKHGIDRTADLLDSIKDFGFHYATLSGLTISIRDVLVSPKREEL 898 Query: 654 ISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQE 713 I E++ EV I+ ++ G +T ERY ++I IW +A +V++ + Sbjct: 899 IEESKGEVLRIESLYEEGYLTDNERYKEIIKIWESATAKVTEE-------------TAKT 945 Query: 714 EKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYF 773 ++ +FN I+MM +SGARG+ Q++QLAGMRGLMA P G IIE PIT+NF+ GL+ L++F Sbjct: 946 YRKYTFNPIWMMIESGARGNIDQLKQLAGMRGLMADPSGKIIEVPITSNFKNGLSELEFF 1005 Query: 774 ISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKE 833 STHG+RKG ADTAL+T+ +GYLTRRLVDVAQ + +TE+DCGT +GI + E Sbjct: 1006 TSTHGSRKGSADTALRTSTAGYLTRRLVDVAQSITITEEDCGTDKGIEARELWADDSKIE 1065 Query: 834 PLRDRVLGRVTAEDVLKPGTADIL--------VPRNTLLHEQWCDLLEENSVDAVKVRSV 885 L D + GRV A+DVL P T +++ R +L E+ L + S Sbjct: 1066 NLSDFLFGRVLAKDVLDPETKEVIFNPQADKKYERGIILKEKDAQFLANYVKEIPV--SK 1123 Query: 886 VSCDTDFGVCAHCYGRDLARGH-----IINKGEAIGVIAAQSIGEPGTQ------LTMRT 934 + Y L +I KGE I A + G Q T Sbjct: 1124 EKTIKIEDMPKDSYLESLEDVQVEGKVLIKKGEEITEEAIEEAFLHGIQKLDVKEYTAVD 1183 Query: 935 FHIGGAASRAAAESSIQVKNKGSIKLS-NVKSVVNSSGKLVITSR-----NTELKLIDEF 988 + G + + K ++ V V+ G +T R + L E Sbjct: 1184 YVYSGEDLKVEIDGKTVTLLKYQERIDLKVSKVLEKHGIKTVTVRPSIFIRSPLTCESEN 1243 Query: 989 GRTKESYKVPYGAVLAKGDGEQV---------AGGETVANWDPHTMPVITE---VSGFVR 1036 G + Y + GE V G + HT + T G R Sbjct: 1244 GLCAKCYGMDLSNYKLVNRGEAVGIIAAQSIGEPGTQLTMRTFHTGGIATTSDITQGLPR 1303 Query: 1037 FTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMP 1096 ++ + + T+ + + +V T + R + I ++ G Sbjct: 1304 AEELFEARKKTKGPEGEFSKTKGIVRAIERDTENKRGRRLKIIIENSDGE---------L 1354 Query: 1097 AQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLF-EARRPKEPAI 1155 Y + +E+G ++ +G L + G P L E ++ Sbjct: 1355 ESYEADYRTKAVVEEGDKVLAGQRLTTGNIKPRNILKELGVGPLANYLLSEIKKIYAEQG 1414 Query: 1156 LAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVF-----------EGERV 1204 + + +I D +++ + + E + Sbjct: 1415 VDIHDKHFEIIIRQMINKVEIIDGGDTDFMPGDLVSYGKVQKINEEILEENSYITENREL 1474 Query: 1205 ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 1264 G ++ P + + E+ + Q ++ N K IEV K Sbjct: 1475 VVGKKLAKRVIIPAEDEEEEEDKIFEQG--TEITEEILNQIIETNIKEIEVYEE---YKE 1529 Query: 1265 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS 1324 G + + +++ N K Y R LL ITKASL E ++SAAS Sbjct: 1530 ITTEEGKTHLV-----------GTSKKYLINPKDTIKYERRLLRITKASLEREGWLSAAS 1578 Query: 1325 FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPA 1380 FQ+T ++LTEAA+ GK D L+GLKENVIVG+ IPAGTG + D+ E A Sbjct: 1579 FQQTVQILTEAAIEGKVDRLKGLKENVIVGQPIPAGTGLKLYADQNYEVVQPEKEA 1634 Score = 186 bits (473), Expect = 5e-45, Method: Composition-based stats. Identities = 81/175 (46%), Positives = 112/175 (64%), Gaps = 6/175 (3%) Query: 9 KAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDY 68 + + IKI +ASP I S GEVKKPET+N+RT KPE+DGLFC +IFGPVKDY Sbjct: 3 NVSSFQRKIAKIKIGIASPQSILEASNGEVKKPETLNHRTGKPEKDGLFCEKIFGPVKDY 62 Query: 69 ECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLL 128 EC CGKYK K+ G +CE+CGV+V + RR ++GHIELA+P +HIW+LKS PS + ++L Sbjct: 63 ECACGKYKGKKYEGTVCERCGVKVESKEARRRKIGHIELATPISHIWYLKSSPSILSIIL 122 Query: 129 DMPLRDIERVLYFESYVVIE------GGMTNLERQQILTEEQYLDALEEFGDEFD 177 ++ ++D+E ++Y+ S VIE G N + E Y E + + D Sbjct: 123 NIGVKDLENIIYYGSKRVIERAYLTLPGPENENLGYLPGEILYQREYEIYDEYLD 177 >UniRef50_Q3M5C9 DNA-directed RNA polymerase subunit gamma n=11 Tax=cellular organisms RepID=RPOC1_ANAVT Length = 625 Score = 732 bits (1890), Expect = 0.0, Method: Composition-based stats. Identities = 343/559 (61%), Positives = 435/559 (77%), Gaps = 18/559 (3%) Query: 11 QTKTEEFDAIKIALASPDMIRSWS---------FGEVKKPETINYRTFKPERDGLFCARI 61 +T +FD +KI LASP+ IR W GEV KPETINYRT KPE DGLFC RI Sbjct: 3 PAQTNQFDYVKIGLASPERIRQWGERTLPNGQVVGEVTKPETINYRTLKPEMDGLFCERI 62 Query: 62 FGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLP 121 FGP KD+EC CGKYKR++HRG++CE+CGVEVT+++VRR RMG+I+LA+P AH+W+LK +P Sbjct: 63 FGPAKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGYIKLAAPVAHVWYLKGIP 122 Query: 122 SRIGLLLDMPLRDIERVLYFESYVVIEGGM-TNLERQQILTEEQYLDALEEFGDE----- 175 S I +LLDMPLRD+E+++YF SYVV+ G L +Q+L+E+Q+L+ ++ E Sbjct: 123 SYISILLDMPLRDVEQIVYFNSYVVLSPGNAETLTYKQLLSEDQWLEIEDQIYSEDSQLQ 182 Query: 176 -FDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKP 234 + +GAEA+ LL ++LEQE E LREE+ KR KL KR+++++ F+ +G+KP Sbjct: 183 GVEVGIGAEALLRLLADINLEQEAESLREEIGSAKG-QKRAKLIKRLRVIDNFIATGSKP 241 Query: 235 EWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRN 294 EWM++TV+PV+PPDLRP+V LDGGRFATSDLNDLYRRVINRNNRL RL ++ AP+IIVRN Sbjct: 242 EWMVMTVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVRN 301 Query: 295 EKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSV 354 EKRMLQEAVDAL+DNGRRGR + G+N RPLKSL+D+I+GKQGRFRQNLLGKRVDYSGRSV Sbjct: 302 EKRMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRSV 361 Query: 355 ITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDE 414 I VGP L++HQCGLP++MA+ELF+PF+ +L G+ IKAAKK++ R + VWD+L+E Sbjct: 362 IVVGPKLKIHQCGLPREMAIELFQPFVINRLIRSGMVNNIKAAKKLISRNDPSVWDVLEE 421 Query: 415 VIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTL 474 VI HPV+LNRAPTLHRLGIQAFEP+L+EG+AIQLHPLVC A+NADFDGDQMAVHVPL+L Sbjct: 422 VIEGHPVMLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLSL 481 Query: 475 EAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNA-KGEGMVLTGPKEA 533 E+Q EAR LM+++NNILSPA G PII PSQD+VLG YY+T + A KG G + Sbjct: 482 ESQAEARLLMLASNNILSPATGRPIITPSQDMVLGAYYLTAENPGATKGAGKYFASLDDV 541 Query: 534 ERLYRSGLASLHARVKVRI 552 ++ LHA + VR Sbjct: 542 IMAFQQEQIDLHAYIYVRF 560 >UniRef50_D0EVW4 DNA-directed RNA polymerase n=1 Tax=Bryopsis hypnoides RepID=D0EVW4_9CHLO Length = 920 Score = 729 bits (1882), Expect = 0.0, Method: Composition-based stats. Identities = 325/829 (39%), Positives = 494/829 (59%), Gaps = 88/829 (10%) Query: 194 LEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLV 253 LE++ L E N + ++ +L +R+K++ F Q+ NKP WMIL++LPVLPPDLRP++ Sbjct: 99 LERQIRILLIENNVNSHFFEKIRLLQRLKIIRCFRQTKNKPAWMILSILPVLPPDLRPIL 158 Query: 254 PLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDII--VRNEKRMLQEAVDALLDNGR 311 L+ + A SDLN LY++V+ RN RL+RLL+ + ++ +R+LQE+VDAL++NG+ Sbjct: 159 QLNNDQIAISDLNKLYQKVLFRNRRLQRLLNDLYIQNVDEMQYAQRLLQESVDALIENGK 218 Query: 312 RG-RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPK 370 G + SN RPLKSL+DM+KGK+GRFRQNLLGKRVDYSGRSVI VG L+L++CGLPK Sbjct: 219 SGNQPAQTSNNRPLKSLSDMLKGKKGRFRQNLLGKRVDYSGRSVIIVGSNLQLYECGLPK 278 Query: 371 KMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLH 430 +MA+ELF+PF+ +L +R A TI AKK++++ A++W IL EV++ HP+LLNRAPTLH Sbjct: 279 EMAIELFQPFLLRRLIIRKKAKTILGAKKLIQQSNAIIWPILKEVLQSHPILLNRAPTLH 338 Query: 431 RLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNI 490 RL IQAF+P LIEG+AI LHPLVC+++NADFDGDQMAVH+PL+ E++ EA L+ S NN Sbjct: 339 RLSIQAFQPKLIEGRAILLHPLVCSSFNADFDGDQMAVHIPLSFESRAEAWKLLWSLNNF 398 Query: 491 LSPANGEPIIVPSQDVVLGLYYMT--------------------RDCVNAKGEGMVLTGP 530 +SPA G+PI++PSQD+VLG Y+T + K + + Sbjct: 399 ISPATGQPILLPSQDMVLGSSYLTLKNSKTFQEIYYQLNTQKSFDRNLILKIQQLSFYEI 458 Query: 531 KEAERLYRSGLASLHARVKVRI-----------------------------TEYEKDANG 561 K+ + + + I +K + Sbjct: 459 KQIFNKTQVETIQHYHQSFWIIWNQHFETDCKTQKLLEMKLNRFGVFQKIYPNLQKSFSS 518 Query: 562 ELVAKTSLKDTTVGRAILWMIVPKGLPY----------------------SIVNQALGKK 599 + + TT+GR + + + ++ KK Sbjct: 519 KNKQQNQKILTTIGRILFYFWLNPASFKKLNAAEYYFMLLEKQSRKAHMDYFFDRCFEKK 578 Query: 600 AISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEA 659 + ++L Y I G K T+ + + GF Y+ +SG S+G++D+ + KK ++ + +E Sbjct: 579 RLKQLLIWFYHIEGEKNTLKLLENLKQLGFFYSTKSGLSIGLEDLQLNLKKSQLYNLSEF 638 Query: 660 EVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSF 719 E+ +I+ +Q +T E ++++++IWA N+++ +++N Q + Sbjct: 639 EIQQIELHYQKSNLTKLEYFHQLVEIWAKTNEKLKYQIINNFQLKNQ------------L 686 Query: 720 NSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA 779 N +++MA SGARG+ +Q+RQL GMRGLM+ P G I++ PI +NFREGL + +Y IS +GA Sbjct: 687 NPLFLMAFSGARGNISQVRQLVGMRGLMSDPTGQILDFPIRSNFREGLTLTEYIISCYGA 746 Query: 780 RKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRV 839 RKG+ DTAL+TA SGYLTRRLVDVAQ +++ + DC I + ++ G + L+ R+ Sbjct: 747 RKGIVDTALRTATSGYLTRRLVDVAQHVIIEKQDCKNFYPIWVGNLLSGKKILLSLKQRL 806 Query: 840 LGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCY 899 LGR+ + + + + + +N+ + L + + + +RS ++C + +C +CY Sbjct: 807 LGRILGKQIEIQQSKN-IFFKNSEITVLMAAHL-ASEFNKIPIRSPLTCISPKSICQYCY 864 Query: 900 GRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAES 948 G +LA I++ GEA+GV+AAQSIGEPGTQLTMRTFH GG S E Sbjct: 865 GWNLAMESIVSLGEAVGVLAAQSIGEPGTQLTMRTFHTGGVFSGDLIEQ 913 >UniRef50_B5Y993 DNA-directed RNA polymerase n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y993_COPPD Length = 2037 Score = 726 bits (1873), Expect = 0.0, Method: Composition-based stats. Identities = 370/1012 (36%), Positives = 534/1012 (52%), Gaps = 107/1012 (10%) Query: 165 YLDALEEFGDEFDAKMGAEAIQALLKS----MDLEQECEQLREELNETNSETKRKKLTKR 220 +D L G EAI+ LL+ L+ + L E+L E S K++KLTKR Sbjct: 678 DVDILRNEEPLLKTLTGGEAIKELLEKNYSPDKLQDWVDYLVEQLEEA-SGQKKQKLTKR 736 Query: 221 IKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLK 280 ++++ F++S P WM+L VLPVLPPDLRPL+ R +SDLN+LYRR+INRN RLK Sbjct: 737 LQVVNGFLRSKTNPSWMVLEVLPVLPPDLRPLIFDKNERAKSSDLNELYRRIINRNLRLK 796 Query: 281 RLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQ 340 RL + APD+I+RNE R+LQEAV+AL+DN R+ + + S R LKSL D + GKQGRFRQ Sbjct: 797 RLREQKAPDLIIRNEMRLLQEAVEALIDNSRKDKPVKDSRGRQLKSLTDKLSGKQGRFRQ 856 Query: 341 NLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKM 400 NLLGKRVDYSGRSVI +GP L+L+Q G+P+ MA ELFKP + G+L+ R +A+T K AKKM Sbjct: 857 NLLGKRVDYSGRSVIVIGPDLKLNQTGIPRIMAAELFKPMLIGELQRREIASTAKQAKKM 916 Query: 401 VEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNAD 460 +E + +W +L ++++ + VLLNRAPTLHR IQAFEPVL++ KAI + P++C +NAD Sbjct: 917 IESYDPRIWPVLADIVKGYYVLLNRAPTLHRPSIQAFEPVLVDSKAISVPPMICPPFNAD 976 Query: 461 FDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVN- 519 FDGDQMAVHVPL+ +A EAR LM S NILSPA+GEP+ P+QD+V+G Y++T D Sbjct: 977 FDGDQMAVHVPLSNQALAEARFLMSSHLNILSPAHGEPLAAPTQDLVIGPYFLTADIEGD 1036 Query: 520 AKGEGMVLTGPKEAERLYRSGLASLHARVK-VRITEYEKDANG--ELVAKTSLKDTTVGR 576 KG+G + E E LHA + V + + + G + + T +TTVGR Sbjct: 1037 FKGDGTIFYSAHEVEMALEDKKVDLHAHIWYVPLLKGDGSVQGTSQGIDTTKKGNTTVGR 1096 Query: 577 AILWMIVPKGLPYSIV------NQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFA 630 I + + L + + N + KK + +N LGL ++ D I GF Sbjct: 1097 VIFNHFINQRLAENGLQALPFANDTMTKKVLYSYINDAIDRLGLSDSIYVLDAIKELGFK 1156 Query: 631 YAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAAN 690 YA SG ++ D+ + K +++ EA ++ I++++ G +T ERY K+++IW Sbjct: 1157 YATFSGLTISALDLSVVPSKDKLVEEAREKIERIEQEYNFGRLTVEERYEKIVNIWRDVV 1216 Query: 691 DRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKP 750 +RV+ ++ D + +YMM SGARG+ Q+RQL G+RGLMA P Sbjct: 1217 ERVTDSLTDYFKETD---------------HLYMMFTSGARGNKDQVRQLVGLRGLMADP 1261 Query: 751 DGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVT 810 G IIE PI + EGL + +YF+STHGARKG ADTALKTA++GYLTRRLVDV Q + +T Sbjct: 1262 TGKIIEYPIIDSLLEGLTIQEYFVSTHGARKGQADTALKTADAGYLTRRLVDVVQSVTIT 1321 Query: 811 EDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCD 870 EDD + V G E + ++GR EDV PG + +V R ++ + Sbjct: 1322 EDD------HSVVSV--GPKTFENVAAALVGRFAEEDVTLPGFDEPVVRRGQVIGVEEAQ 1373 Query: 871 LLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQL 930 L+ E ++ + VR RDL + + + Sbjct: 1374 LIAEAGIEIL-VR-----------------RDLEMVRVSDLLDP---------------- 1399 Query: 931 TMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGR 990 F G + +++ G L V S + + EL + D + Sbjct: 1400 --DNFVYGLNHTNFVLPGEMRI---GDEILPKGTKVTPS-----LAYKLKELGVEDLVVK 1449 Query: 991 TKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQT---IT 1047 +E L D E G +A + + + G D++D T I Sbjct: 1450 REEG--------LLVRDLEA-TDGSVIAE-------LGSRIWGRFAAEDIVDPNTGEVIV 1493 Query: 1048 RQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIV 1107 R E+T + + + ++ + + + G V G D+ + + V Sbjct: 1494 RAGQEITAQDAQRIDRADVKSV---RIHSPITCLSEDGVCVTCYGRDLSRRRLVEKGESV 1550 Query: 1108 QLEDGVQI-SSGDTLARIPQESGGT--KDITGGLPRVADLFEARRPKEPAIL 1156 + I G L +GG +DITGGLPRV +LFEAR+ + Sbjct: 1551 GVVAAQSIGEPGTQLTLRTFHTGGVAGEDITGGLPRVEELFEARKKNALTDI 1602 Score = 328 bits (842), Expect = 8e-88, Method: Composition-based stats. Identities = 165/598 (27%), Positives = 267/598 (44%), Gaps = 40/598 (6%) Query: 804 AQDLVVTEDDCGTHEGIMMTPVI-EGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNT 862 +DLVV EG+++ + G V L R+ GR AED++ P T +++V Sbjct: 1443 VEDLVVK-----REEGLLVRDLEATDGSVIAELGSRIWGRFAAEDIVDPNTGEVIVRAGQ 1497 Query: 863 LLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQS 922 + Q ++ V +V++ S ++C ++ GVC CYGRDL+R ++ KGE++GV+AAQS Sbjct: 1498 EITAQDAQRIDRADVKSVRIHSPITCLSEDGVCVTCYGRDLSRRRLVEKGESVGVVAAQS 1557 Query: 923 IGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSN-VKSVVNSSGKLVITSRNTE 981 IGEPGTQLT+RTFH GG A +V+ + N + +V E Sbjct: 1558 IGEPGTQLTLRTFHTGGVAGEDITGGLPRVEELFEARKKNALTDIVLPLQDFFAVFDGAE 1617 Query: 982 LKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMI 1041 K+ ES+ VL E + + N +++S + ++ Sbjct: 1618 QKIERYVSNAMESFVGELDNVLKAHLNE-IEDPDAAKNLKKVVRSWFSDMSDLLN-EKLL 1675 Query: 1042 DGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFL 1101 + Q + GL+ + + E L + + + Sbjct: 1676 QMRHELMQGYDWNGLNLTSLNRANEMMEELYQLLERKAGEFERIFMDALHAASLEEHVGS 1735 Query: 1102 PGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLF---------------- 1145 + D VQ + L+ +P I G P F Sbjct: 1736 LSGHFREKLDNVQNTLRTELSIVPWYIAVAAGIKGDDPAELKNFYASYVDSLHVGDVDFA 1795 Query: 1146 ---EARRPKEPAIL---AEISGIV--SFGKETKGKRRLVITPVDGSDPYEEMI--PKWRQ 1195 +A+RP + L A + G+V +F G+ I V D + + + R+ Sbjct: 1796 FDIDAKRPTKKGKLVAMAPMDGVVHETFTVTEHGQELFTIIVVKQGDSFGAFVTNAESRK 1855 Query: 1196 LNVFEGE----RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDK 1251 L + + + G + +LR G +A Y++ E++ VY Q V+INDK Sbjct: 1856 LRIRPDDMGTKYLFPGYRLVFDSIEASLLLRAFGKNAAADYLIGEIKSVYASQKVEINDK 1915 Query: 1252 HIEVIVRQMLRKATIVNAGSS-DFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGIT 1310 H E+++RQM K I +G S + L G+ VE++ + R GK + +G+T Sbjct: 1916 HFEIVLRQMFSKVVIDESGDSVEMLPGDVVEWTDYEQEVRYWTLQGKKAPRGRQLCMGVT 1975 Query: 1311 KASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD 1368 K S +++S+++AASFQET +VL +AA+AGK D+L+GLKENVI+ R IPAGTG +D Sbjct: 1976 KVSKSSKSWLAAASFQETPQVLVDAAIAGKVDKLKGLKENVIIARRIPAGTGIYKEED 2033 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 89/180 (49%), Positives = 122/180 (67%), Gaps = 1/180 (0%) Query: 16 EFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKY 75 +FDA+++ LASPD IR+ S GEVKK ET+NYRT +PE DGLFC RIFGP +DYEC CGKY Sbjct: 2 DFDALRVRLASPDEIRAMSHGEVKKSETVNYRTNRPEPDGLFCERIFGPTRDYECACGKY 61 Query: 76 KRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDI 135 K K+ G +CE+CGVEVT++ VRRERMGHIEL +P H WF ++ SR+G ++DM +D+ Sbjct: 62 KGRKYEGQVCERCGVEVTRSSVRRERMGHIELGTPIVHPWFFRNAQSRLGFMVDMKQKDL 121 Query: 136 ERVLYFESYVVIEGGMTNLERQQILTEEQYLD-ALEEFGDEFDAKMGAEAIQALLKSMDL 194 ERV+Y+ S + + G L R ++T E+ L + G + A+ L ++L Sbjct: 122 ERVIYYTSNLATDTGPDILPRLTVMTSEKALAFSFWFLGQKLVLHSIADVQSIPLDRLEL 181 >UniRef50_Q110H2 DNA-directed RNA polymerase subunit gamma n=543 Tax=cellular organisms RepID=RPOC1_TRIEI Length = 672 Score = 725 bits (1872), Expect = 0.0, Method: Composition-based stats. Identities = 350/623 (56%), Positives = 455/623 (73%), Gaps = 27/623 (4%) Query: 15 EEFDAIKIALASPDMIRSWS---------FGEVKKPETINYRTFKPERDGLFCARIFGPV 65 + FD +KI LASPD IR W GEV KPETINYRT KPE DGLFC RIFGP Sbjct: 6 QRFDYVKIGLASPDRIRGWGERTLPNGTVVGEVTKPETINYRTLKPEMDGLFCERIFGPA 65 Query: 66 KDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIG 125 KD+EC CGKYKR++HRG++CE+CGVEVT+++VRR RMGHI+LA+P H+W+LK +PS + Sbjct: 66 KDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGHIKLAAPVTHVWYLKGIPSYMA 125 Query: 126 LLLDMPLRDIERVLYFESYVVIEGG-MTNLERQQILTEEQYLDALEEFGDE------FDA 178 +LLDMPLRD+E+++YF +YVV+E G +L +Q+L+E+ +L+ ++ E D Sbjct: 126 ILLDMPLRDVEQIVYFNAYVVLEPGNHESLSYKQLLSEDVWLEIEDQIYSEDSEIVGVDV 185 Query: 179 KMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMI 238 +GAEA+Q LL ++DLE E E+LREE+ + KR KL KR+++++ F+ +G++PEWM+ Sbjct: 186 GIGAEALQVLLANLDLEVEAEKLREEIANSKG-QKRAKLIKRLRVIDNFIATGSRPEWMV 244 Query: 239 LTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRM 298 L +PV+PPDLRP+V LDGGRFATSDLNDLYRRVINRNNRL RL ++ AP+II+RNEKRM Sbjct: 245 LDAIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIIRNEKRM 304 Query: 299 LQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVG 358 LQEAVDAL+DNGRRGR + G+N RPLKSL+D+I+GKQGRFRQNLLGKRVDYSGRSVI VG Sbjct: 305 LQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRSVIVVG 364 Query: 359 PYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIRE 418 P L ++QCGLP++MA+ELF+PF+ +L +GL IKAAKK++++ + VWD+L+EVI Sbjct: 365 PKLAINQCGLPREMAIELFQPFVIHRLIRQGLVNNIKAAKKLIQKGDPNVWDVLEEVIDG 424 Query: 419 HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQL 478 HPV+LNRAPTLHRLGIQAFEP+L+EG+AIQLHPLVC A+NADFDGDQMAVHVPL+LE+Q Sbjct: 425 HPVMLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLSLESQA 484 Query: 479 EARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKG-EGMVLTGPKEAERLY 537 EAR LM+++NN+LSPA G PII PSQD+VLG YY+T + +G + + P + Y Sbjct: 485 EARLLMLASNNVLSPATGRPIITPSQDMVLGCYYLTAENHKLQGSKALYFANPDDVILAY 544 Query: 538 RSGLASLHARVKVRI---TEYEKDANGELVAKT-----SLKDTTVGRAILWMIVPKGLPY 589 + LH V +R+ E E D E+ L T + ++P L Sbjct: 545 QQDKIDLHTYVYLRLAPDVEIETDKPEEIPPDIQQISDELVVHTYWMPLDSKVLPNTLGE 604 Query: 590 SIVNQALGKKAISKMLNTCYRIL 612 Q + K N YRI Sbjct: 605 LKSEQKCENGDLVKAYN-LYRIH 626 >UniRef50_O14802 DNA-directed RNA polymerase III subunit RPC1 n=30 Tax=Eumetazoa RepID=RPC1_HUMAN Length = 1390 Score = 724 bits (1869), Expect = 0.0, Method: Composition-based stats. Identities = 287/1529 (18%), Positives = 523/1529 (34%), Gaps = 322/1529 (21%) Query: 4 LLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRT-FKPERDGLFCARIF 62 + + + ++ I + SP+ +R + +V + P G+ R+ Sbjct: 2 VKEQFRETDVAKKISHICFGMKSPEEMRQQAHIQVVSKNLYSQDNQHAPLLYGVLDHRMG 61 Query: 63 GPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPS 122 KD CE CG + G+I+L P H+ + +++ Sbjct: 62 TSEKDR---------------PCETCGKNLADC---LGHYGYIDLELPCFHVGYFRAVIG 103 Query: 123 RIGLLLDMPLRDIERVLYFESYV--VIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKM 180 + ++ + + ++ + G+T L+++ + + + A Sbjct: 104 ILQMICKTCCHIMLSQEEKKQFLDYLKRPGLTYLQKRGLKKKISDKCRKKNICHHCGAFN 163 Query: 181 G----AEAIQALLKSMD--------------------------LEQECEQLREELNETNS 210 G ++ + + +E + +E LN Sbjct: 164 GTVKKCGLLKIIHEKYKTNKKVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQENLNPLVV 223 Query: 211 ETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLD-GGRFATSDLNDLY 269 K++ L KP +ILT L V P +RP V D DL Sbjct: 224 LNLFKRIPAEDVPLLLMNPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKL 283 Query: 270 RRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLAD 329 +I N+ +K+ A ++ + LQ +++ G + + K+ + Sbjct: 284 TEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQ 343 Query: 330 MIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRG 389 +KGKQGRFR NL GKRVD+SGR+VI+ P LR+ + +P +A L P K + Sbjct: 344 RLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINF 403 Query: 390 LATT------IKAAKKMVEREEAVVWDIL-------------------DEVIREHPVLLN 424 L + +++ + L +I VL N Sbjct: 404 LRKLVQNGPEVHPGANFIQQRHTQMKRFLKYGNREKMAQELKYGDIVERHLIDGDVVLFN 463 Query: 425 RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 484 R P+LH+L I A + + + + VC YNADFDGD+M +H+P T EA+ EA LM Sbjct: 464 RQPSLHKLSIMAHLARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLM 523 Query: 485 MSTNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVLTGPKEAERLYRSGLAS 543 + N+++P NGEP+I QD + G Y +T +D + +A ++ S L Sbjct: 524 GTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDR---------AKACQIIASILVG 574 Query: 544 LHARVKVR-----ITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPY--------- 589 ++KVR I + G+ + L+ + + Sbjct: 575 KDEKIKVRLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKGEDLCAN 634 Query: 590 ---------SIVNQALGKKAISK-----MLNTCYRILGLKPTVIFADQIMYTGFAYAARS 635 +++ ++ K + + R G ++ Y + Sbjct: 635 DSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNR 694 Query: 636 GASVGIDDMV----IPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAAND 691 G S+GI D+ + + K+E+++ + E E +G + A + Sbjct: 695 GFSIGIGDVTPGQGLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGC--------TAEE 746 Query: 692 RVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMA--- 748 + ++ L + NS MA G++GS I Q+ G A Sbjct: 747 TLEALILKELSVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISG 806 Query: 749 --KPDGS---------------IIETPITANFREGLNVLQYFISTHGARKGLADTALKTA 791 PDG + + +F GL ++F T R+GL DTA+KTA Sbjct: 807 SRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTA 866 Query: 792 NSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEP----------LRDRVLG 841 +GY+ RRLV +DL D + I GGD +P RVL Sbjct: 867 ETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLD 926 Query: 842 RVTA------EDVLKPG----TADILVPRNTLL-----------------HEQWCDLLEE 874 + A E L T + ++ ++ L E+ ++ Sbjct: 927 NIKAVFPCPSEPALSKNELILTTESIMKKSEFLCCQDSFLQEIKKFIKGVSEKIKKTRDK 986 Query: 875 NSVDAVKVRSV--------VSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEP 926 ++ ++ C RD + G A+G + AQSIGEP Sbjct: 987 YGINDNGTTEPRVLYQLDRITPTQVEKFLETC--RDKYMRAQMEPGSAVGALCAQSIGEP 1044 Query: 927 GTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLID 986 GTQ+T++TFH G AS + + +K ++N+S + Sbjct: 1045 GTQMTLKTFHFAGVASMNIT-----------LGVPRIKEIINASKAI------------- 1080 Query: 987 EFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTI 1046 + P+IT + D D + Sbjct: 1081 -------------------------------------STPIIT---AQLDKDDDADYARL 1100 Query: 1047 TRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAI 1106 + E T L + + E D +K+ + + + +Y + + Sbjct: 1101 VKGRIEKTLLGE--ISEYIEEVFLPDDCFILVKLSLERIRLLRLEVNAETVRYSICT-SK 1157 Query: 1107 VQLEDGVQISSGD-TLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSF 1165 ++++ G G+ + P+E+ + + V + PK V Sbjct: 1158 LRVKPGDVAVHGEAVVCVTPRENSKSS-----MYYVLQFLKEDLPK-----------VVV 1201 Query: 1166 GKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRG 1225 + R ++ +++ + L +G + +++ + G Sbjct: 1202 QGIPEVSRAVIHIDEQSGKEKYKLLVEGDNLRAVMATHGVKGTRTT--SNNTYEVEKTLG 1259 Query: 1226 VHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRV 1285 + A I+NE+Q G+ I+ +H+ ++ M Sbjct: 1260 IEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMT------------------------ 1295 Query: 1286 KIANRELEANGKVGATYSRDLLGITKASLA--TESFISAASFQETTRVLTEAAVAGKRDE 1343 Y ++LGIT+ LA ES + ASF++T L +AA G++D Sbjct: 1296 ----------------YKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDS 1339 Query: 1344 LRGLKENVIVGRLIPAGTGYAYHQDRMRR 1372 + G+ E +I+G + GTG + R Sbjct: 1340 VCGVSECIIMGIPMNIGTGLFKLLHKADR 1368 >UniRef50_D2V0G9 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2V0G9_NAEGR Length = 1426 Score = 722 bits (1863), Expect = 0.0, Method: Composition-based stats. Identities = 308/1518 (20%), Positives = 529/1518 (34%), Gaps = 312/1518 (20%) Query: 14 TEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCG 73 + IK ++ +P+ IR S ++ N + P++ G GP+ D G Sbjct: 26 PKRISQIKFSVFTPEDIRRMSTVQI-----YNQHYYTPDKRGFP----HGPL-DPRLGTG 75 Query: 74 KYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLR 133 K ICE CG+ V G+++L P HI F+ S + +L + Sbjct: 76 TKKD------ICETCGLGVADCI---GHYGYVKLELPVFHIGFI----SNVVEVLQRICK 122 Query: 134 DIERVLYFESYV-------------------------------------VIEGGMTNLER 156 D RVL +S + + G +T L Sbjct: 123 DCSRVLLSDSEIQSFRNKFKRPMDNQQKKALYKKVGELCKKCSQCPHCGSLNGKVTKLNA 182 Query: 157 QQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKK 216 +I+ E+ + + + D+ D + E ++ L E E E + + + + Sbjct: 183 IKIVHEKYKVASTRKGKDDID-QQSREFQSEFGLAVQLNPEIEPFLGEAQDDINPIRCLR 241 Query: 217 LTKRIKL----LEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRV 272 L K I + +PE ILT + V P +RP V DGG DL +++ Sbjct: 242 LFKNISDTDVEVLNMNPKVVRPENFILTHILVPPLVIRPTVNTDGGT-NEDDLTAQMKKI 300 Query: 273 INRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIK 332 I N L+ ++ A + LQ +++ R + K+ K+L +K Sbjct: 301 IETNIILRESVEQGAIVQNFMEKWDTLQLETALYINSDTRNIPSFVTKKKVSKTLCQRLK 360 Query: 333 GKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLAT 392 GK GRFR NL GKR +++GR+VI+ P L ++Q +P+ +A L P + + + L + Sbjct: 361 GKHGRFRGNLSGKRANFTGRTVISPDPNLEINQVAIPELVAKVLTYPEVVNRTNKKLLQS 420 Query: 393 TI------KAAKKMVEREEAVVWD-------------------ILDEVIREHPVLLNRAP 427 I V + + + + + V+ L NR P Sbjct: 421 LILNGPEVHPGANFVIKSDGIRKNLAFAKDKMEVAKNLKFGDIVERHVMNGDYALFNRQP 480 Query: 428 TLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMST 487 +LHRL I ++ + + + CA YNADFDGD+M VH+P T EA+ EA LM Sbjct: 481 SLHRLSIMCHRVKVLPYRTFRFNVCDCAPYNADFDGDEMNVHIPQTEEAKAEAGMLMDIL 540 Query: 488 NNILSPANGEPIIVPSQDVVLGLYYMTRDCVNA--------------KGEGMVLTGPKEA 533 N+++P NG+P+I +QD + + MTR + + + L P Sbjct: 541 KNLITPKNGDPVISCNQDFLTAAWKMTRKNTFFDRAEFCMLCSYMGIEDKKIDLPPPTIL 600 Query: 534 ERL-YRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKG--LPYS 590 + + +G VK E AK LKD T+ ++ + + Sbjct: 601 KPIELWTGKQLFSLLVKPNNNTNVFVN-FETKAKNYLKDETMCPNDGYVCFRNSYLICGN 659 Query: 591 IVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMV----I 646 + + LG + S + R +G ++ + G S+GIDD++ + Sbjct: 660 LDKKILGDGSKSSLFYVLIRTVGPAYAAACMARVARVASRWLMNYGFSIGIDDVMPSAQL 719 Query: 647 PEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETV 706 EKK I+SE A E + ++ G + N + A N +S+ Sbjct: 720 TEKKKMILSEGYAVCDEYIKLYKDGKLEPQPGCNMEQTLEAKLNRELSEI--------RG 771 Query: 707 INRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAK--------------PDG 752 ++ N+ M+ G++GS I Q+ G P Sbjct: 772 RAGSMCLDELHWLNAPLTMSVCGSKGSVINISQMIACVGQQTVGGTRIANGFMNRTLPHF 831 Query: 753 SII------ETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQD 806 + + ++ +F GL ++F T G R+G+ DTA+KTA +GY+ RRL+ +D Sbjct: 832 PMFARDPAAKGFVSNSFFTGLTPTEFFFHTMGGREGIVDTAVKTAETGYMQRRLMKALED 891 Query: 807 LVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVL--GRVTAEDVLKPGTADILVP----- 859 L V D + G D +P R GR + +I +P Sbjct: 892 LFVAYDGSVRSADNTVIQFKYGDDGMDPHRMESEESGRPLNFTFVMMHEKNINLPTKDEK 951 Query: 860 ----------RNTLLHEQWCDLLEENSVD----------------------AVKVRSVVS 887 ++ L E+ ++ + +D A +R Sbjct: 952 ALTPDEIRQKLDSFLKEKESNIFSDKFIDELSTFTNNYIFKLENLLKGVAAANSIRDENE 1011 Query: 888 CDTDFGV------------------CAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQ 929 + V C Y R LA GE +G IA QSIGEP TQ Sbjct: 1012 NNAWEKVVHYIEKITDRQLTSFFRACRSKYFRALA-----EPGEPVGGIAGQSIGEPTTQ 1066 Query: 930 LTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFG 989 +T++TFH G AS ++K + + N S ++ +T L + Sbjct: 1067 MTLKTFHFAGVASMNVTLGVPRIKEI-------IDATKNISTPIITAYLDTPLTATKKQK 1119 Query: 990 RTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQ 1049 V G + G+ V + V G Sbjct: 1120 EMAAR--VVKGRIEKTTLGQVVN----------YIREVY------------NLGICYIEI 1155 Query: 1050 TDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQL 1109 ++ +S+L + + E P +K + K V++ Sbjct: 1156 DLDVKQISALQLDITPETVKNSILYSPLMKFEKGKEKSKDKTKLSDEPNLVQIQKGKVRV 1215 Query: 1110 EDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKET 1169 + + I G+P A++ E G V E Sbjct: 1216 YPPSVDRDRMYFNIQKLKRYLPEVIVAGIPTTNR----------AVINEEKGNVYLLVEG 1265 Query: 1170 KGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAV 1229 ++ TP + + +I + G+ + Sbjct: 1266 TDLLAVMGTPGVLAKTTKTN--------------------------NIIEISQTLGIESA 1299 Query: 1230 TRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIAN 1289 + I++E++ G+ I+ +HI+++ M Sbjct: 1300 RQLIMDEIKYTTGSYGMNIDTRHIKLLADIMT---------------------------- 1331 Query: 1290 RELEANGKVGATYSRDLLGITKASLAT--ESFISAASFQETTRVLTEAAVAGKRDELRGL 1347 + D+ GI + + +S + ASF++TT L EAA + D++ G+ Sbjct: 1332 ------------FKGDIFGIQRHGIIKIRDSVLKMASFEQTTDHLFEAASHTRVDDVNGV 1379 Query: 1348 KENVIVGRLIPAGTGYAY 1365 E +I+G IP GTG Sbjct: 1380 SECIIMGVPIPIGTGLFR 1397 >UniRef50_D1HEN1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Vitis vinifera RepID=D1HEN1_VITVI Length = 1565 Score = 713 bits (1839), Expect = 0.0, Method: Composition-based stats. Identities = 258/1161 (22%), Positives = 437/1161 (37%), Gaps = 252/1161 (21%) Query: 5 LKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGP 64 ++F + + + ++ + SPD IR S +++ ET KP+ GL R+ Sbjct: 3 MRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETT--ERGKPKPGGLSDPRLGTI 60 Query: 65 VKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRI 124 R + CE C + + GH+ELA P HI F+K++ S + Sbjct: 61 ---------------DRKMKCETCTANMAECP---GHFGHLELAKPMFHIGFMKTVLSIM 102 Query: 125 GLLLDMPLRDIERVL----------YFESYVVIEGGMTNL----------ERQQILTEEQ 164 + + + L F + ++ G + L + Q+I + Sbjct: 103 RCVCFNCSKILADELTENVKWISKSKFANMKSLKLGHSLLHCKSEDHKFKQAQKIRNPKN 162 Query: 165 YLDAL---------EEFGDEFD--------------AKMGAEAIQALLKSMDLEQECEQL 201 L + E GDE + GA+ + ++ M + E + Sbjct: 163 RLKKILDACKNKSKCEGGDEIETQALDSDEPVKKSRGGCGAQQPKLTIEGMKMIAEYKIQ 222 Query: 202 REE----------------LNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVL 245 R++ L+ K+++ +L +P+WMIL VLP+ Sbjct: 223 RKKNDDPEQLPEPVERKQQLSAERVLNVLKRISDEDCILLGLNPKYARPDWMILQVLPIP 282 Query: 246 PPDLRPLVPLDGGRFAT------------------SDLNDLYRRVINRNNRLKRLLDLAA 287 PP +RP V +D + DL +I N L+R A Sbjct: 283 PPPVRPSVMMDTSSRSEASLSVLVNDRLKLSMWLWDDLTHQLAMIIRHNENLRRQERNGA 342 Query: 288 PDIIVRNEKRMLQEAVDALLDNGRRGRA-ITGSNKRPLKSLADMIKGKQGRFRQNLLGKR 346 P I+ ++LQ V DN G+ T + RP+KS+ +K K+GR R NL+GKR Sbjct: 343 PAHIISEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKR 402 Query: 347 VDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI---------KAA 397 VD+S R+VIT P + + + G+P +AL L P + L + K Sbjct: 403 VDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTG 462 Query: 398 KKMVEREEAVVWD-----------------ILDEVIREHPVLLNRAPTLHRLGIQAFEPV 440 K + RE+ D + + VL NR P+LH++ I Sbjct: 463 AKYIIREDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIK 522 Query: 441 LIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPII 500 ++ +L+ V + YNADFDGD+M +HVP + E + E LMM I+SP + P++ Sbjct: 523 IMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVM 582 Query: 501 VPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDAN 560 QD +LG +T+ + + V + I + +D + Sbjct: 583 GIVQDTLLGCRKITKRDTFIEKD------------------------VFMNILMWWEDFD 618 Query: 561 GELVAKTSLK--DTTVGRAILWMIVPKGLP---------------------------YSI 591 G++ A LK G+ + +I+PK + + Sbjct: 619 GKIPAPAILKPRPLWTGKQVFNLIIPKQINLLRTSAWHSESETGFITPGDTQVRIEKGEL 678 Query: 592 VNQALGKKAI----SKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMV-- 645 + L KK + +++ + +G F + + ++G S+GI D + Sbjct: 679 LAGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIAD 738 Query: 646 --IPEKKHEIISEAEAEVAEIQEQFQSGLVTAGE-------RYNKVIDIWAAANDRVSKA 696 EK +E IS+A+ EV E+ Q + A N+V + A D + Sbjct: 739 AATMEKINETISKAKNEVKELIRAAQERQLEAEPGRTMMESFENRVNQVLNKARDDAGSS 798 Query: 697 MMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM--------- 747 +L N++ M +G++GS I Q+ G Sbjct: 799 AQKSLSES---------------NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPY 843 Query: 748 -----------AKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYL 796 G + ++ GL ++F G R+GL DTA+KT+ +GY+ Sbjct: 844 GFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYI 903 Query: 797 TRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADI 856 RRLV +D++V D + + + G D D V D LK + Sbjct: 904 QRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM----DAVWIETQKLDSLKMKKGEF 959 Query: 857 -LVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAI 915 V + + E W S + R + + F R L ++ GE I Sbjct: 960 DRVFKYEIDDENW-----NPSYMLPEHRLIWNAQKTFKERLKIESRFL--QSLVAPGEMI 1012 Query: 916 GVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVI 975 G +AAQSIGEP TQ+T+ TFH G +++ + + ++ ++N + K+ Sbjct: 1013 GCVAAQSIGEPATQMTLNTFHYAGVSAKNVT-----------LGVPRLREIINVAKKIKT 1061 Query: 976 TSRNTELKLIDEFGRTKESYK 996 S + LK + +TKE K Sbjct: 1062 PSLSVYLK--PDVSKTKERAK 1080 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 67/376 (17%), Positives = 134/376 (35%), Gaps = 91/376 (24%) Query: 1043 GQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLP 1102 + + D+ S ++ + K + LKI ++ PG + Sbjct: 960 DRVFKYEIDDENWNPSYMLPEHRLIWNAQKTFKERLKIESRFLQSLVAPGEMIGCVAAQS 1019 Query: 1103 GKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFE-ARRPKEPAILAEISG 1161 ++ TL K++T G+PR+ ++ A++ K P++ + Sbjct: 1020 IGEP---------ATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKP 1070 Query: 1162 IVSFGKETKGK---------RRLVITPVDGSDPYEEMIPKWRQLNVFE--------GERV 1204 VS KE R V + P+ I R++ + + +++ Sbjct: 1071 DVSKTKERAKNVQCALEYTTLRSVTQATEKISPWLLRIELNREMMLQDESAEDDVFLKKI 1130 Query: 1205 ERGDVI--SDG------------------PEAPHDILRLRGVHAVTRYIVNEVQDVYRLQ 1244 E+ + + ++G +++ + G+ AV R +++E++ V Sbjct: 1131 EKVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1190 Query: 1245 GVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSR 1304 G +N +H+ ++ M Y Sbjct: 1191 GSYVNYRHLAILCDTMT----------------------------------------YRG 1210 Query: 1305 DLLGITKASLATE--SFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362 L+ IT+ + + SF+ET +L +AAV + D LRG+ EN+++G+L P GTG Sbjct: 1211 HLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDFLRGVTENIMLGQLAPIGTG 1270 Query: 1363 --YAYHQDRMRRRAAG 1376 Y D+M + A Sbjct: 1271 DCALYLNDQMLQHAIE 1286 >UniRef50_B0EG66 DNA-directed RNA polymerase n=2 Tax=Entamoeba RepID=B0EG66_ENTDI Length = 1379 Score = 712 bits (1837), Expect = 0.0, Method: Composition-based stats. Identities = 308/1511 (20%), Positives = 546/1511 (36%), Gaps = 320/1511 (21%) Query: 2 KDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARI 61 K+ ++F+ + + I+ + S + + S EV + T KP +G+ R+ Sbjct: 19 KENIEFVGPSERPGKVCDIQFTMFSQEEMNRESEFEVTEHFLFQPNTRKPNPNGVLDRRL 78 Query: 62 FGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLP 121 + +CE CG + + I L P HI F + + Sbjct: 79 ---------------GVCDSLSVCETCGKRIEECS---GHFAVINLELPVFHIGFFRPII 120 Query: 122 SRIGLLLDMPLRDI----ERVLYF------------ESYVV------------------- 146 + + R + ER Y +Y+V Sbjct: 121 QVLQCVCKNCNRILLTNEERDFYLRRMRNKKTDTVARTYLVRALITQCRKHYNSCPHCNA 180 Query: 147 IEGGMTNLERQQILTEEQYLDA----LEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLR 202 I G + +++ ++ + DA + EF D F+ E+I+ D+ + + Sbjct: 181 INGSIKKYGNLRLVHDKYHRDATITEMNEFYDGFE-----ESIK---LDKDINAFVDNAQ 232 Query: 203 EELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGR-FA 261 E+L+ + + L + F PE MILT +PV P +RP V +DGG Sbjct: 233 EDLDPRKVLSIFRSLIREDIETMDFDPDNAPPENMILTSVPVPPIAIRPSVAMDGGNASN 292 Query: 262 TSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNK 321 DL + ++ N+R+K ++ A + L AV +++ G Sbjct: 293 EDDLTTQLKEIMECNDRIKEMIKRGASPYQYYDSWDQLTIAVSMFINSDLPGC---DDKG 349 Query: 322 RPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFI 381 +PL+S+ +KGK GRFR NLLGKRVD+SGR+VI+ P L + Q G+PK MA++L P Sbjct: 350 KPLRSICQRLKGKHGRFRGNLLGKRVDFSGRTVISPDPNLDIEQIGVPKLMAIKLTYPER 409 Query: 382 YGKLELRGLATTIKAAKKMVER--------------------------EEAVVWDILDEV 415 K + L + + ++ + DI++ Sbjct: 410 VTKHNIDKLRQLVINGSNIYPGCNSIIGGTDGLRRSMCIKLEMREKFAKDLKIGDIVERH 469 Query: 416 IRE-HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTL 474 + + VL NR P+LHR+ I + ++ + ++ + VC YNADFDGD+M +HVP T Sbjct: 470 LEDNDIVLFNRQPSLHRISIMCHKAKILPWRTLRFNECVCTPYNADFDGDEMNLHVPQTE 529 Query: 475 EAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAE 534 EA+ E LM S N+ +P G+ II +QD + Y +T + E M+ Sbjct: 530 EARAECLMLMHSAKNLQTPRTGQMIIAETQDFLTTSYLLTSKDFVIEEEDMM-QWACWFH 588 Query: 535 RLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTV---------GRAILWMIVPK 585 A +K + K G + + + + WM V Sbjct: 589 NAGTEIDLPTPAYLKPKKLWTGKQLYGLALKPNKHEGVNISLDVPSKLYSKEGKWMCVKD 648 Query: 586 GLPY----SIVNQALGKKAISK-----MLNTCYRILGLKPTVIFADQIMYTGFAYAARSG 636 G ++ + K I + + R G + I + G Sbjct: 649 GWICFKNSQLLCGQIEKSIIGSGNKTGLFHLILRDYGTLESAKIMAHISRFCARFLGDYG 708 Query: 637 ASVGIDDMV----IPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDR 692 S+GI D+ + + K E++SE + + E ++SG + + + Sbjct: 709 FSIGISDVTPSADLTQMKEELVSEGYKKCDQFIEDYKSGK--------QEVQAGSTPEQT 760 Query: 693 VSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDG 752 + + + L E+ S NS +MA SG++GS I Q+ G G Sbjct: 761 LEALLNNELSEIRERAGKRCIEELKSDNSPLVMALSGSKGSVINISQMIACVGQQTVNGG 820 Query: 753 SIIETPI--------------------TANFREGLNVLQYFISTHGARKGLADTALKTAN 792 + + I +F GLN ++F T G R+GL D+A+KTA Sbjct: 821 RVSDGFISRSLPHFALHSRTPQAKGFVKNSFFTGLNATEFFFHTMGGREGLVDSAVKTAE 880 Query: 793 SGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLR-DRVLGRVTAEDVLKP 851 +GY+ RRL+ +DL V D + + G D +PL+ + + E VL Sbjct: 881 TGYMQRRLMKALEDLHVHYDGTVRSASLTVIEFKYGDDGLDPLKVESDKYPINLESVLSN 940 Query: 852 G------TADILVPRN------------TLLHEQWCDLLE----ENSVDAVKVR------ 883 + + P N ++ E W LE E + +++ Sbjct: 941 LQQNQKPDDEYITPENFDKEYNAIISQTKIVSELWKQQLETFLKEKKEEMIEIYNRYDQE 1000 Query: 884 ---------SVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRT 934 ++ + +C R + G +G +A QS+GEP TQ+ ++T Sbjct: 1001 NAQHGLCGITIQTLKEFISICQKKGLRS-----VCEAGTPVGALAGQSMGEPSTQMVLKT 1055 Query: 935 FHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKES 994 FH G AS A + + +K ++N+S K+ +L + S Sbjct: 1056 FHFAGVASMNIA-----------LGVPRIKEIINASKKIQTPIVTAKLV----NSQDLTS 1100 Query: 995 YKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELT 1054 ++ G + +++A + + P + ++ F + TI + D L Sbjct: 1101 ARIVKG-RIEATRLKEIAKSIKIV-FKPAEAYISVKLD-FETIKQLELECTIEKVQDVLL 1157 Query: 1055 GLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQ 1114 L + D+ + LR VD +L + Q Sbjct: 1158 NYRGLKLKDNQVIIRNKQKLR---VYVDKASTSLLFALNSLRNQLL-------------- 1200 Query: 1115 ISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRR 1174 + I G+ A++ + G+ E + Sbjct: 1201 -----------------EVIVCGIENT----------GRAVINKNKGLFELLVEGSELLK 1233 Query: 1175 LVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIV 1234 ++ TP + + V E ++ G+ A I+ Sbjct: 1234 VMGTPGVIGEETT-----SNHIAVVE---------------------KVLGIEAARSTII 1267 Query: 1235 NEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEA 1294 +E+++V G+ I+ +H+ ++ M K Sbjct: 1268 SEIKNVMDAYGLSIDVRHLLLLSDLMTFK------------------------------- 1296 Query: 1295 NGKVGATYSRDLLGITKASLA--TESFISAASFQETTRVLTEAAVAGKRDELRGLKENVI 1352 +LGIT+ ++ +S + ASF+ T L +AAV ++DE++G+ E++I Sbjct: 1297 ---------GVILGITRYGISKMKDSVFTFASFERTNDHLFDAAVHSRKDEIKGVSESII 1347 Query: 1353 VGRLIPAGTGY 1363 VG + GTG Sbjct: 1348 VGNQVGLGTGL 1358 >UniRef50_B8C4M1 DNA-directed RNA polymerase n=1 Tax=Thalassiosira pseudonana RepID=B8C4M1_THAPS Length = 1422 Score = 708 bits (1826), Expect = 0.0, Method: Composition-based stats. Identities = 317/1528 (20%), Positives = 537/1528 (35%), Gaps = 305/1528 (19%) Query: 7 FLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVK 66 +A ++ ++ L SP ++ + +V + P R+G+ R+ Sbjct: 28 LPEANPTPKQISHLQFGLLSPSDMQRLAEFQVTSRDLFTMPQRLPARNGVLDPRL----- 82 Query: 67 DYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGL 126 + + C C +++ G+I LA P HI +LK + Sbjct: 83 ----------GVSDKVSTCATCKLKLADCA---GHFGYIRLALPVFHIGYLKHTLN---- 125 Query: 127 LLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDA-------------LEEFG 173 LL + RVL ++ + R +L + + Sbjct: 126 LLQCICKSCSRVLLTDAERKMLLKKMRNPRTDVLGKASVFKKVLDKCKKAHQCPYCHKPN 185 Query: 174 DEFDAKMGAEAIQALLKSMD---LEQECEQLR---------------------EELNETN 209 GA ++ + + +E E E L E+L T Sbjct: 186 GTVKKVHGAPTLKIIHERYKGRHMEDEVEDLLQSLQGAMITNLEINHALRVAVEDLLPTR 245 Query: 210 SETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLD-GGRFATSDLNDL 268 K +T + +PE +IL + V P +RP V +D GG DL Sbjct: 246 VLELFKGMTDDDCEVLWVAPWIGRPENLILEHILVPPVPIRPSVAMDVGGGSNEDDLTVK 305 Query: 269 YRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLA 328 VIN N L+ + + +LQ V ++ G +K P++ L Sbjct: 306 LLEVINVNVALELNMTRNPQTKTIMEGWDVLQSQVAQYINGDMPGLKKEMGHK-PIRGLC 364 Query: 329 DMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELR 388 +KGKQGRFR NL GKRVD+S R+VI+ P LR+ Q G+P +A + P + + Sbjct: 365 QRLKGKQGRFRGNLSGKRVDFSARTVISPDPNLRVDQVGVPVHVAKIMTYPETVSRYNIE 424 Query: 389 GLATTIKAAKK---------------------MVEREEA----VVWDILDEVIR-EHPVL 422 L + +RE A + DI++ + VL Sbjct: 425 KLRQRVLNGPDVHPGANLIRPGGENSFVKSLAYADRERAAQTLRIGDIVERHMEDGDVVL 484 Query: 423 LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARA 482 NR P+LH+L I + + ++ + + + VCA YNADFDGD+M +H+P T EA++EA Sbjct: 485 FNRQPSLHKLSIMSHQVKVMPWRTFRFNICVCAPYNADFDGDEMNMHLPQTEEARIEANM 544 Query: 483 LMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLA 542 LM +N+ +P NGEP++ SQD + Y +T+ E M + Sbjct: 545 LMGVHHNLATPRNGEPLVACSQDFLSAAYLITQRDQFFSRE-MFCSLVSYFGLAEEQIDV 603 Query: 543 SLHARVKV-----------RITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGL---- 587 L A +K I + K + + K+ + + G Sbjct: 604 PLPAILKPVPLWTGKQVFTCIVKPNKQTTALVNFEMKEKNYDTNKKLKHFCPNDGWVAFR 663 Query: 588 PYSIVNQALGKKAIS-----KMLNTCYRILGLKPTVIFADQIMYTGFAY-AARSGASVGI 641 +++ + KK I +L R G F D+ Y G S+GI Sbjct: 664 NSELISGNIAKKTIGDGSKTGLLYVLLRDCGSAEAARFMDRFSKLCSRYFGMHRGFSIGI 723 Query: 642 DDM----VIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAM 697 D+ + + K++I+S + E +++ G + + + + N + K Sbjct: 724 SDVSPSAKLKKMKYDILSTGYKKAEEAIKKYDEGTLELRPGCDLLQSLEEILNGILGKLR 783 Query: 698 MDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIE- 756 + N+ +MA+ G++GS I Q+ G A I + Sbjct: 784 E--------AAGQEAMKALPWSNTPRIMAECGSKGSPLNISQMMACVGQQAVGGMRIQDG 835 Query: 757 -------------------TPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLT 797 + +F GL ++ T G R+GL DTA+KTA +GY+ Sbjct: 836 FVNRTLPHFTYHSLTPPAKGFVANSFYSGLTATEFIFHTMGGREGLVDTAVKTAETGYMA 895 Query: 798 RRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADIL 857 RRL+ +DL + D+ + + G D P + R D L + I Sbjct: 896 RRLMKALEDLSLRYDNSVRNSENTVVQFTYGDDSLNPEKMENNDRPVEFDRLHLHISQIF 955 Query: 858 --VPRNTLLHEQWCDLLEE---------------------------------------NS 876 V LL EQ + +E + Sbjct: 956 PCVDEPNLLKEQLQEKIEHCISEERFQCLLPKGKKFLAEIISFFEGIVELQDTIIGTCTN 1015 Query: 877 VDAVKVRSVVSCDTDFGVCAHCYGRDLA--RGHIINKGEAIGVIAAQSIGEPGTQLTMRT 934 V+ +K R SC L+ ++ GEA+G I AQSI EPGTQ+T++T Sbjct: 1016 VEHIKQRIWNSCRFTETQVNEFLKTALSKYTKAMVEPGEAVGAIGAQSISEPGTQMTLKT 1075 Query: 935 FHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKES 994 FH G +S + + +K ++N+S I++ KL+ + + Sbjct: 1076 FHFAGVSSMNVT-----------LGVPRLKEIINASKN--ISTPIITAKLVQDDNKV--- 1119 Query: 995 YKVPYGAVLAKGDGEQVAGG---ETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTD 1051 GA + V G T+ + V + SG + ++D I + Sbjct: 1120 -----GARI-------VKAGIEKTTLGEISIYVKEVYS--SGDCYLSILLDMDAIRQLRL 1165 Query: 1052 ELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLED 1111 + +S + R RP + + ++ G+ + F+P Sbjct: 1166 NIDAVSVRRCILKGVR----GQTRPPILRSLTDKHVLVKKGSKSKLRVFVP--------- 1212 Query: 1112 GVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKG 1171 G+T ++ LPRV + + A++ E Sbjct: 1213 ----DKGETPTYFLMQALKVA-----LPRV--IVQGISTVNRAVINE------------- 1248 Query: 1172 KRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTR 1231 G ++ + L G G + ++ + GV A Sbjct: 1249 -------ENKGGKTQYHLLVEGYGLAEVMGSPGVDGRHTTTNHII--EVEQTLGVEAART 1299 Query: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRE 1291 I +E+ + G+ I+ +H+ ++ M K GE Sbjct: 1300 SISSEISYIMNAYGIGIDSRHLLLLSDVMTFK-------------GE------------- 1333 Query: 1292 LEANGKVGATYSRDLLGITKASLAT--ESFISAASFQETTRVLTEAAVAGKRDELRGLKE 1349 +LGIT+ +A ES + ASF++TT L +AAV G+ D + G+ E Sbjct: 1334 --------------VLGITRFGVAKMRESVLMLASFEKTTDHLLDAAVHGRTDAIDGVSE 1379 Query: 1350 NVIVGRLIPAGTGYAYHQDRMRRRAAGE 1377 +I+G IP GTG R R + E Sbjct: 1380 CIIMGIPIPIGTGLFKLLKRATRASKPE 1407 >UniRef50_B6K857 DNA-directed RNA polymerase n=9 Tax=Eukaryota RepID=B6K857_SCHJY Length = 1406 Score = 703 bits (1813), Expect = 0.0, Method: Composition-based stats. Identities = 288/1532 (18%), Positives = 522/1532 (34%), Gaps = 329/1532 (21%) Query: 5 LKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGP 64 +K + ++ L+ P + EV + KP G R+ Sbjct: 1 MKEPVDDQVPKRIRHLQFCLSGPKEFVKDAVVEVSTRDLYTMTERKPVEHGALDRRMGTT 60 Query: 65 VKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRI 124 R +C CG V GH+ LA P +I + K+ + + Sbjct: 61 ---------------DRNAVCATCGEGVADCI---GHFGHVRLALPVFNIGYFKTTLTIL 102 Query: 125 GLLLDMPLRDIERVLYFESYVV--IEGGMTNLERQQILTE----------EQYLDALEEF 172 + + ++++ + G+ NL R QI Y + + Sbjct: 103 QNICKDCATVLVSQREKQNFLKELRKPGIDNLRRTQICKRLNDACKKVRVCPYCNKTQGV 162 Query: 173 GDE------------FDAKM---GAEAIQ----ALLKSMDLEQECEQLREELNETNSETK 213 + F+ KM G E Q AL DL + ++LN Sbjct: 163 VKKAGPLKIIHERFRFNRKMQEEGGEFRQSFDQALKAMPDLRPHLHKAHDDLNPLRVLNL 222 Query: 214 RKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVI 273 K++T L +PE ++ +P P +RP V +G D+ ++ Sbjct: 223 FKQITPMDCELLGMDPEKGRPENLLWQYMPAPPVTIRPTVAQEGATT-EDDITIKLTEIV 281 Query: 274 NRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKG 333 ++ ++ L+ P + + LQ +V +++ G +P + +KG Sbjct: 282 WTSSLIRAALNKGTPINSLMEQWEFLQLSVALYINSELPGLRPPDMPSKPTRGFCQRLKG 341 Query: 334 KQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATT 393 KQGRFR NL GKRVD+SGR+VI+ P L++ Q +P ++A L P + L T Sbjct: 342 KQGRFRGNLSGKRVDFSGRTVISPDPNLQIDQVAVPLRIAKILTYPEKVTDQNIDALRTR 401 Query: 394 I-------KAAKKMVEREEAV-----------------VWDILDEVIRE-HPVLLNRAPT 428 + A +V+R+ + V D ++ +++ VL NR P+ Sbjct: 402 VTNGPDVHPGANYVVDRDTGIKRFLRFGNRKRIAEELHVGDTVERHLQDNDVVLFNRQPS 461 Query: 429 LHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTN 488 LH+L I A + + ++ + VC YNADFDGD+M +HVP T EA+ EA LM N Sbjct: 462 LHKLSIMAHLVKVRPWRTLRFNECVCGPYNADFDGDEMNLHVPQTEEARTEALELMGIKN 521 Query: 489 NILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARV 548 N+++P NGEPII +QD + Y ++ + A + Sbjct: 522 NLVTPRNGEPIIAATQDFITASYLLSLKDCFLDRKTFC-NLCCFMVDASVHIDIPPPAIL 580 Query: 549 KVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPY----------------SIV 592 K R K G L+ L V A + KG ++ Sbjct: 581 KPRCLWTGKQLFGVLMRPNHLSPVMVNLAANTRSIAKGKCSPPEMCPNDGYLLIQNSELL 640 Query: 593 NQALGKKAIS-----KMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDM--- 644 + K + + R G +++ Y G S+GI+D+ Sbjct: 641 AGVVDKSIVGDGKKNSLFYVILRDYGPIEAAATMNRLAKLCARYLGNRGFSIGINDVQPG 700 Query: 645 -VIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQT 703 + K ++ +A + ++ Q+ G + N+ + + + +SK D Sbjct: 701 QRLYHTKEALVEKAYSVSDDLIMQYAKGTLECQPGMNQEATLESKISSTLSKVRDD---- 756 Query: 704 ETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM-----AKPDGS----- 753 + ++ S N+ +MA G++GS + Q+ G PDG Sbjct: 757 ----VGETCMKELGSRNAPLIMATCGSKGSKINVSQMVACVGQQIISGKRVPDGFQDRSL 812 Query: 754 ----------IIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDV 803 + + ++ +F GL ++ R+GL DTA+KTA +GY++RRL+ Sbjct: 813 PHFRKNSKHPLAKGFVSNSFYTGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKS 872 Query: 804 AQDLVVTEDDCGTHEGIMMTPVIEG----------GDVKEPLRDRVLGR----------- 842 +DL D + G GD +R Sbjct: 873 LEDLTSAYDGTVRSSNSSIVQFTYGDDGLDPTYLEGDGTPVAFERCWSHSSNITYNEDDS 932 Query: 843 --------------VTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAV---KVRSV 885 +++ T + + T + E+ L + + K+ Sbjct: 933 GLLPYKIIEETESILSSRKFTANCTENFIESVRTFVIERLAKKLAQVRANRQLAPKLERP 992 Query: 886 ---------------------------VSCDTDFGVCAHCYGRDLARGHIINKGEAIGVI 918 VS + C + + G A+G + Sbjct: 993 SEDDFDDFENDDFAPLAARKSVDNVLRVSKKQLYTFLQFC--WEKYMKAKVEPGTAVGAV 1050 Query: 919 AAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSR 978 A SIGEPGTQ+T++TFH G A++ ++ + +K ++N++ + Sbjct: 1051 GAHSIGEPGTQMTLKTFHFAGVAAQT------------TLGVPRIKEIINAAKTI----- 1093 Query: 979 NTELKLIDEFGRTKESYKVPYGAVLAKGD--GEQVAGGETVANWDPHTMPVITEVSG--F 1034 S + YGA++ D +V G + + + E+ G Sbjct: 1094 ---------------STPIIYGALVNDQDVRSARVVKGRIEKTYLKDVISSLEEIFGPTN 1138 Query: 1035 VRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTD 1094 + ++ TI + +LT + D A L+ ++ V + I Sbjct: 1139 TYISVHVNFDTIRKLQLDLT------LADIASAIWTAPKLKIPMQQVTVHDSANEIRVHV 1192 Query: 1095 MPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPA 1154 P ++ + + G+P+ + A Sbjct: 1193 TPDTKDFENSSVYYRLQ-------------TYKRALPNVVVSGIPKTSR----------A 1229 Query: 1155 ILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGP 1214 I+ + ++++ + L G Sbjct: 1230 IILQ------------------------EGEKKQLVVEGYGLREVMNTEGIVGSKTFTNH 1265 Query: 1215 EAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDF 1274 ++ + G+ A + I+ E+ R G+ ++ +HI ++ M K Sbjct: 1266 VM--EMNAVLGIEAARQSIIYEIDSTMRNHGLTVDPRHIMLLGDVMTCK----------- 1312 Query: 1275 LEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLA--TESFISAASFQETTRVL 1332 GE +LGIT+ +A +S +S ASF++TT L Sbjct: 1313 --GE---------------------------VLGITRFGVAKMKDSVLSLASFEKTTDHL 1343 Query: 1333 TEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 +AA +D + G+ E +++G+L P GT Sbjct: 1344 FDAAARFAKDSIEGISECIVLGKLAPIGTNVF 1375 >UniRef50_Q9AXN0 DNA-directed RNA polymerase n=4 Tax=Rhodophyta RepID=Q9AXN0_9RHOD Length = 1746 Score = 691 bits (1784), Expect = 0.0, Method: Composition-based stats. Identities = 196/909 (21%), Positives = 368/909 (40%), Gaps = 123/909 (13%) Query: 1 MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60 M + FL + + ++ A++ + SPD IR S E+ K ET + KP+ +GL R Sbjct: 1 MSFVKDFLYSSAEVKKVKAVQFGVLSPDEIRRMSVCEI-KFETA-FEMGKPKTEGLMDPR 58 Query: 61 IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120 + +D + C+ C + GHIEL P +I F Sbjct: 59 LGAIGRD---------------LPCKTCHCDEKNCP---GHFGHIELVKPMFNIGFF--- 97 Query: 121 PSRIGLLLDMPLRDIERVLYFESYVVIEGGMT--NLERQQILTEEQYLDALEEFGD---- 174 M LR + V +F S ++I+ + E +++L + ++ L++ + Sbjct: 98 --------GMTLRVLRCVCFFCSKLLIDPRDPKADFEVKKVLRIKNRINRLKKVQNLCSK 149 Query: 175 -EFDAKMGAEAIQALLKSMDLEQECEQLREE-------LNETNSETKRKKLTKRIKLLEA 226 + E + + + E + ++ ++ + K ++ + Sbjct: 150 VKICKHCSNEQPKFAKEGLQFRAEFKGSADDTMEKKQIVSAEKVLSIFKHISDDDIEIMG 209 Query: 227 FVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLA 286 ++PEW ILT+ PV PP +RP V +D DL ++ NN L+ + Sbjct: 210 LSPQHSRPEWFILTLFPVPPPHIRPSVMMDASMRGEDDLTYKLGDIVRNNNALREMERTG 269 Query: 287 APDIIVRNEKRMLQEAVDALLDNGRRGRA-ITGSNKRPLKSLADMIKGKQGRFRQNLLGK 345 AP + + +LQ + +++N G + RP+KS++ +KGK+GR R NL+GK Sbjct: 270 APAHRLNEQIHVLQAHIITIMNNDLPGMPRAHQKSGRPIKSISQRLKGKEGRVRGNLMGK 329 Query: 346 RVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI------KAAKK 399 RVD+SGR+VI+ P LRL Q G+P+ +A+ L P + + + + K Sbjct: 330 RVDFSGRTVISPDPNLRLDQVGVPQTIAMNLTYPEVVTPFNVEKMRRLVMNGPNEYPGAK 389 Query: 400 MVEREEAVV-----------------WDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLI 442 +ER + ++ ++ V+ NR P+LH++ I ++ Sbjct: 390 YIERLDGSKVNLAFVKNRSDIHLNNGEKVIRHLLDGDYVIFNRQPSLHKMSIMGHRVKVM 449 Query: 443 EGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVP 502 + +L+ + YNADFDGD+M +HVP + +A+ E LMM I+SP +P++ Sbjct: 450 RYSSFRLNLSCTSPYNADFDGDEMNLHVPQSPQARAEVMQLMMVPRCIVSPQGNKPVMGI 509 Query: 503 SQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGE 562 QD ++G T+ + + L I + + G+ Sbjct: 510 VQDTLVGTMLFTQRDTFMEKDL--------VMNLLLHFRGWDGVIPPPAILKPRQLWTGK 561 Query: 563 LVAKTSLKDTTVGRAILW--------------MIVPKGLPYSIVNQALGKKAISKMLNTC 608 + L D + R +I L V++ A + +++ Sbjct: 562 QLFSMILPDVNLVRFSNTHDDDDIENAGDTKVLISRGELLSGTVDKRTVGSAANSLVHVT 621 Query: 609 YRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKH----EIISEAEAEVAEI 664 ++ G + I + + G S+GI D + E+ EII++A+ EV + Sbjct: 622 WKEHGPEGACDLISNIQTLVNHWLLQRGFSIGIGDTIADEQTRFNVIEIINKAKEEVKRL 681 Query: 665 QEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 724 + Q G + +++ + ++V D ++ ++ + N+I Sbjct: 682 VRKAQEGELQLLPG-KTMMESFETGVNKVLNGARDKSGSD-------AQKSLLKTNNIKR 733 Query: 725 MADSGARGSAAQIRQLAGMRGLMA--------------------KPDGSIIETPITANFR 764 M ++G++GS I Q+ G G + ++ Sbjct: 734 MVNAGSKGSFINISQICACVGQQNVEGKRISYGFRRRTLPHFVLDDLGPESRGFVENSYL 793 Query: 765 EGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTP 824 GL ++F G R+GL DTA+KT+ +GY+ RRL+ +D++V D + ++ Sbjct: 794 RGLTATEFFFHAMGGREGLIDTAVKTSETGYIQRRLIKALEDVMVKYDGTVRNSTGLIVQ 853 Query: 825 VIEGGDVKE 833 + G D + Sbjct: 854 FLYGEDGMD 862 Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats. Identities = 90/517 (17%), Positives = 170/517 (32%), Gaps = 94/517 (18%) Query: 902 DLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLS 961 + GE IG +A QSIGEP TQ+T+ TFH G +++ + + Sbjct: 1069 NRFLHAKCPPGEMIGAVAPQSIGEPATQMTLNTFHFAGVSAKNVT-----------LGVP 1117 Query: 962 NVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWD 1021 +K ++N + S L+ E R E K A L V + +D Sbjct: 1118 RLKEIINVAKHCKTPSLTVYLR--GEAARDAERAKQVQ-AELQHTTLNHVTQSTEI-YYD 1173 Query: 1022 PHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIV 1081 P+ Q + D+ S + D +A L + Sbjct: 1174 PN-------------------PQDTVIEADQELVRSYYELPDDENSSANLSPWLLRLNLS 1214 Query: 1082 DAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTL------ARIPQESGGTKDIT 1135 D + + + V + + L + P++ ++ Sbjct: 1215 KEMMTDRKLSMNHVKNKIHHDLGGDVNVMASEDNDANLVLRIRIAAQKEPEKMAEGEEHA 1274 Query: 1136 GGLPRVADLFEARRPKEPAILAEIS-GIVSFGKETKGKRRLVITPV---DGSDPYEEMIP 1191 LF R E ++L+E++ G V K+ + I P G +E + Sbjct: 1275 QEEEEDECLF--LRKVEGSLLSEMNLGGVPDIKKVYMREADRIVPDPRTGGLSVEKEWVL 1332 Query: 1192 KWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDK 1251 N+ + D ++ G+ V ++NE++ V G +N + Sbjct: 1333 DTDGTNLLAVMSHKDVDYTRTVSNDVVEMFVTLGIEGVRAALLNEIRGVISFDGAYVNYR 1392 Query: 1252 HIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITK 1311 H+ ++ M + I + IT+ Sbjct: 1393 HLAILADIMTCRGHI----------------------------------------MSITR 1412 Query: 1312 ASLA--TESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGT---GYAYH 1366 + + SF+ET +L EAA+ G+ D+++G+ EN+++G++ P GT G + Sbjct: 1413 HGINRVETGALMRCSFEETADILLEAAMYGEVDDMKGVAENIMLGQMAPVGTGEFGLLLN 1472 Query: 1367 QDRMRRRAAGEAPA---APQVTAEDASASLAELLNAG 1400 + ++ E A + + +AG Sbjct: 1473 EKALKNLITAEEDARTPRAGLMSPAHGFDTPRAFDAG 1509 >UniRef50_Q7X881 DNA-directed RNA polymerase n=6 Tax=Magnoliophyta RepID=Q7X881_ORYSJ Length = 1383 Score = 691 bits (1782), Expect = 0.0, Method: Composition-based stats. Identities = 307/1523 (20%), Positives = 541/1523 (35%), Gaps = 337/1523 (22%) Query: 14 TEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCG 73 T +I+ ++ S + +R + +V N+ KP +GL R+ K E Sbjct: 21 TRRIKSIRFSMFSGNEVRQSAEVQVWNSRIYNHE-MKPVPNGLLDTRMGAANKLGE---- 75 Query: 74 KYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLR 133 C C + G+++LA P ++ F + + + + Sbjct: 76 -----------CSTCHGSFAECP---GHFGYLKLALPVFNVGFFNCILDVLKCI----CK 117 Query: 134 DIERVLYFES------YVVIEGGMTNLERQQILTEEQYLDALEEFGDE-FDAKMGAEAIQ 186 RVL E + L++ I+ + + L F + + Sbjct: 118 SCSRVLLMEKDRLEFLKKMRNPKADPLQKSAIMKKVRDKCKLSRCPWCGFINGVAKKGRA 177 Query: 187 ALLKSMDLEQECEQLREELNETNSETKRK---------------KLTKRIKLLEAFVQS- 230 L+ D + + EEL + S K K L KR+ + + + Sbjct: 178 GLIILHDCSKTLDGSTEELRDALSHKKEKLSISAVRMLDPAIVLSLFKRMTDEDCELLNL 237 Query: 231 GNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSD-LNDLYRRVINRNNRLKRLLDLAAPD 289 G++PE +I+T + V P +RP V + GGR + D + + + + N N+ LK L Sbjct: 238 GDRPEKLIVTEIAVPPVPIRPSVFVAGGRMSNEDSITVILKSIANTNSILKENLQTGGQF 297 Query: 290 IIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDY 349 + + + LQ V +++ + + L +KGK GRFR NL GKR +Y Sbjct: 298 MKCFDCWQHLQLQVVEYINSDAPSLPESQH-----RGLVQRLKGKTGRFRGNLSGKRTEY 352 Query: 350 SGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAK----------- 398 +GR+VI+ P LR+ + +P MA L P + L I+ Sbjct: 353 TGRTVISPDPNLRITEVAIPILMARVLTYPERVSYYNIEKLRQCIRNGPHKHPGANFIIQ 412 Query: 399 --------KMVEREEAVVWDILDEVIREH-----PVLLNRAPTLHRLGIQAFEPVLIEGK 445 K +R A V+ H VL NR P+LHR+ I + ++ + Sbjct: 413 PDGTKLHLKYCDRRIAARDLKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWR 472 Query: 446 AIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQD 505 ++ + VC YNADFDGD+M +HVP T EA+ EA LM NN+ +P NGE ++ +QD Sbjct: 473 TLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQD 532 Query: 506 VVLGLYYMTRDCVNAKG--------------EGMVLTGPKEAERL-------YRSGLASL 544 + + +TR E + L P + + S L Sbjct: 533 FLTSSFLVTRKDNFYDRSSFSLLCSYLGDAMENIDLPTPALIKPIELWTGKQLFSVLVRP 592 Query: 545 HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAIS-- 602 +A KV + K+ + ++L+ + ++ +++ +GK + Sbjct: 593 NACTKVFLNLTVKEKIYKTPKGSTLEPEAMCPNDGFVYFRN---SELLSGQVGKATLGNG 649 Query: 603 ---KMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMV----IPEKKHEIIS 655 M +T R +++ + G S+G+DD+ + ++K I Sbjct: 650 NKDGMFSTLVRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEHLNQEKKMKID 709 Query: 656 EAEAEVAEIQEQFQSGLVTAGERYNK-------VIDIWAAANDRVSKAMMDNLQTETVIN 708 + ++ + G + N + + + K M+ L Sbjct: 710 GGYKDCHDLIASYSKGALRLQPGCNAAQTLEQSITRVLNEIREEAGKVCMNTLHWR---- 765 Query: 709 RDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAK-----PDGSI--------- 754 NS +M+ G++GS I Q+ G + P+G I Sbjct: 766 -----------NSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRTLPHFPI 814 Query: 755 ------IETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLV 808 + + +F GL ++F T G R+GL DTA+KTA +GY++RRL+ +DL Sbjct: 815 NSKTPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLS 874 Query: 809 VTEDDCGTHEGIMMTPVIEGGDVKEPLR-----------DRVLGRVTA------EDVLKP 851 V D + + + G D +P + D++ +V A ++ L P Sbjct: 875 VFYDQTVRNASGGIVQFLYGDDGMDPAKMEGKDGKPLNLDQLFMKVMATCPQRGQNTLSP 934 Query: 852 GTADILVPRNTLLHEQWCD---------------LLEENSVDAVKVRSVVSCDTDF---- 892 +IL N L E LE+ R + D D Sbjct: 935 --GEILQILNDKLSEHDASSDDGCSEKFKQLLTYFLEDRIKLLKSTRRALLLDEDHVGER 992 Query: 893 ------GVCAHCYGRDLARGHI-------------INKGEAIGVIAAQSIGEPGTQLTMR 933 + A+ G + + + I G +IG I AQSIGEPGTQ+T++ Sbjct: 993 HSSFEESIAANISGISVKQLQVFLDTCLSRYHLKKIEAGASIGAIGAQSIGEPGTQMTLK 1052 Query: 934 TFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKE 993 TFH G AS + + +K ++N++ K+ EL + Sbjct: 1053 TFHFAGVASMNVT-----------LGVPRIKEIINAAKKISTPIITAELL----SEKDVL 1097 Query: 994 SYKVPYGAVLAKGDGEQVAG-GETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDE 1052 S ++ G++ GE + + P+ ++ + R Sbjct: 1098 SARIVKGSMEKAVLGEVAEAIKIVLKSSQPN----------------LVVKLDMQRIEAL 1141 Query: 1053 LTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDG 1112 G+S+ V S P +K+ + D P Sbjct: 1142 HMGISADSVQLSIL-------NHPKIKLKSEHVRVI-----DKSKLRIYPAG-------- 1181 Query: 1113 VQISSGDTLARIPQESGGT-KDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKG 1171 I L + K I G+P V A+++E Sbjct: 1182 --IDKSKLLYELHHLKSMLPKVIVKGIPTVER----------AVISE------------- 1216 Query: 1172 KRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTR 1231 T + Y+ ++ L V V D + ++ R G+ A R Sbjct: 1217 ------TGEENDKRYKLLVEGTNLLAVMGTPGV---DAMKTKSNHIMEVNRTLGIEAARR 1267 Query: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRE 1291 I++E+Q + G+ I+ +H+ ++ M Sbjct: 1268 SIIDEIQYTMKSHGMNIDSRHMMLLADLMT------------------------------ 1297 Query: 1292 LEANGKVGATYSRDLLGITKASLA--TESFISAASFQETTRVLTEAAVAGKRDELRGLKE 1349 Y ++LGIT+ +A S + ASF++T L A+ +G+ D++ G+ E Sbjct: 1298 ----------YKGEILGITRYGIAKMKSSVLMLASFEKTAEHLFNASYSGREDQIEGVSE 1347 Query: 1350 NVIVGRLIPAGTGYAYHQDRMRR 1372 +I+G + GTG + R+ Sbjct: 1348 CIIMGIPMQLGTGILKVRQRLDH 1370 >UniRef50_C4R7G6 DNA-directed RNA polymerase n=5 Tax=Saccharomyceta RepID=C4R7G6_PICPG Length = 1460 Score = 689 bits (1777), Expect = 0.0, Method: Composition-based stats. Identities = 311/1569 (19%), Positives = 543/1569 (34%), Gaps = 350/1569 (22%) Query: 5 LKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFK-PERDGLFCARIFG 63 +K + + ++ S D I + S EV N + P +DG R+ Sbjct: 1 MKEVVVDVAPKRIKGLEFNALSSDQIIAQSEVEVNTRNLFNLEKGRAPAKDGALDTRMGV 60 Query: 64 PVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSR 123 K EC C + GHI+LA P H+ + K++ Sbjct: 61 SSKSGECA---------------TCHGNLATCH---GHFGHIKLALPVFHVGYFKAVIQV 102 Query: 124 IGLLLDMPLRDI--ERVLYFESYVVIEGGMTNLERQQILTE----------EQYLDALEE 171 + + + E+ + NL R +I+ AL Sbjct: 103 LQTICKSCASVLLDEKTKRKALEDLRSPNNDNLRRMKIIKRILEQAKKQRRCLKCGALNG 162 Query: 172 FGDEFDAKMGAEAIQA--------------------------LLKSMDLEQECEQLREEL 205 + A G +++ L+ + DLE+ ++ ++L Sbjct: 163 VVKKASAGAGPASLKVIHDTFRWIGKKPSQEKVEWYEDFDNLLINNPDLEKFLKRAYDDL 222 Query: 206 NETNSETKRKKLTKRIKLLEAFVQS-GNKPEWMILTVLPVLPPDLRPLVPL-DGGRFATS 263 N K++ L + G +PE + +P P +RP V + D Sbjct: 223 NPLKVLNLFKQVDPSDCELLGIDTTRGGRPEMYLWRYVPAPPVCIRPSVLMSDSNTSNED 282 Query: 264 DLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAIT------ 317 DL ++ ++ ++ ++ + + LQ +V +++ ++ Sbjct: 283 DLTVKLTEIVWISSLIRAGIEKGISINNLIEQWDYLQLSVAMYINSDAGNMSMLPSAAGS 342 Query: 318 --GSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALE 375 + +P++ +KGKQGRFR NL GKRVD+SGR+VI+ P LR+ + +P ++A Sbjct: 343 AGSKSSKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPDRVAKV 402 Query: 376 LFKPFIYGKLELRGLATTI-------KAAKKMVEREE-----------------AVVWDI 411 L P + L + A +++R+E + DI Sbjct: 403 LTYPEKVTRYNKHKLQQLVLNGPDVHPGANYLLKRDEQNRRNLRFGNRQKLANTLQIGDI 462 Query: 412 LDEVIR-EHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHV 470 ++ + VL NR P+LHRL I + + + +L+ VC YNADFDGD+M +HV Sbjct: 463 VERHLEDGDVVLFNRQPSLHRLSILSHFAKIRPWRTFRLNECVCTPYNADFDGDEMNLHV 522 Query: 471 PLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKG------- 522 P T EA+ EA LM NN+L+P +GEPII +QD + G Y ++ +D + Sbjct: 523 PQTEEARSEAMNLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDTFFDRASLVQILA 582 Query: 523 ------EGMVLTGPKEAERLY-------RSGLASLHARVKVRITEYEKDANGELVAKTSL 569 E L P + Y S L +A+ V I K Sbjct: 583 SMSDGIEHFDLPPPSIFKPAYLWTGKQVFSLLIKPNAKSNVNINLDAKCKTFIPPPAGQP 642 Query: 570 KDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGF 629 + + + + K L + LG + T R G +++ Sbjct: 643 SEMSPNDGFVIVRGSKILSGVMDKSLLGDGKKHSVFYTILRDYGPHEAANAMNRMAKLCA 702 Query: 630 AYAARSGASVGIDDMV----IPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDI 685 Y G S+GI+D+ + +K ++ EA + E+ + F G + N+ + Sbjct: 703 RYLGNRGFSIGINDVTPGDELSREKECMVEEAYKKCDELIKLFNHGKLETQPGCNEEQTL 762 Query: 686 WAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRG 745 A +SK + ++ S N+ +MA G++GS + Q+ + G Sbjct: 763 EAKIGGLLSKVREE--------VGGVCIKELPSSNAPLIMATCGSKGSTLNVSQMVAVVG 814 Query: 746 LM-----AKPDGSI---------------IETPITANFREGLNVLQYFISTHGARKGLAD 785 PDG + + +F GLN ++ R+GL D Sbjct: 815 QQIISGNRVPDGFQDRSLPHFLKNSKTPQSKGFVRNSFYSGLNPPEFLFHAISGREGLVD 874 Query: 786 TALKTANSGYLTRRLVDVAQDLVVTEDDCGTHE----------GIMMTPVIEGGDV---- 831 TA+KTA +GY++RRL+ +DL D + G + P+ GD Sbjct: 875 TAVKTAETGYMSRRLMKSLEDLSAQYDHTVRNSSSGVVQFTYGGDGLDPLDMEGDAKPVN 934 Query: 832 --------------------------------KEPLRDRVLGRVTAEDVLKPGTADILVP 859 +PL+DR++ +++ P AD + Sbjct: 935 FKRTWDHAYNITFNNEDKPLLPYEIMKIADSFLDPLKDRLVRLDNLGNIVNPEDADNIEY 994 Query: 860 RNTL-----LHEQWCDLLEENSVDAVKVR------------------------SVVSCDT 890 + ++ D L + + +R S++ Sbjct: 995 IDQFDAERTFYDTLKDFLFQKTKQLAALRESKGFPGLLQEPESFVDESPDHSVSILINQL 1054 Query: 891 DF----------GVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGA 940 + A Y R + G A+G I AQSIGEPGTQ+T++TFH G Sbjct: 1055 YRITEAAVTKFLELSATKYNR-----AKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGV 1109 Query: 941 ASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYG 1000 AS + + +K ++N+S + N L++E Sbjct: 1110 ASMNVT-----------LGVPRIKEIINASKTISTPIINA--VLVNEDDERAAR------ 1150 Query: 1001 AVLAKGDGEQVAGGETVANWDPHTMPVITEV--SGFVRFTDMIDGQTITRQTDELTGLSS 1058 V G + I +V +D +TI R EL Sbjct: 1151 ----------VVKGRIEKTILQDVVYYIQDVYKENQAYLQVKVDLETIERLQLEL----- 1195 Query: 1059 LVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSG 1118 + + L+ AL+ V G + + + A + D + Sbjct: 1196 -NIDEIRLAIVKAPKLKLALEDVIITGRNKISVCVSDALLDSISKTAAAKGIDTSSTMAN 1254 Query: 1119 DTLARIPQ-ESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVI 1177 + R+ + TK + GLP ++ I G E G + ++ Sbjct: 1255 ELFFRMQHLKRVLTKVVVKGLPDISR---------AVINIRDDGKKELLVEGYGLKEVIA 1305 Query: 1178 TPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEV 1237 T G + + V+ ++ G+ A I+NE+ Sbjct: 1306 TDG------------------VVGCKTKTNHVL--------EVYETLGIEAARSCIINEI 1339 Query: 1238 QDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGK 1297 G+ ++ +HI+++ M Sbjct: 1340 DYTMSKHGMSVDPRHIQLLGDVM------------------------------------- 1362 Query: 1298 VGATYSRDLLGITKASLAT--ESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGR 1355 +Y ++LGIT+ LA +S + ASF++TT L +AA K+D + G+ E VI+G+ Sbjct: 1363 ---SYKGEVLGITRFGLAKMRDSVLQLASFEKTTDHLFDAAFYMKKDLVEGVSECVILGQ 1419 Query: 1356 LIPAGTGYA 1364 + GTG Sbjct: 1420 TMTIGTGAF 1428 >UniRef50_O94666 DNA-directed RNA polymerase III subunit rpc1 n=5 Tax=Eukaryota RepID=RPC1_SCHPO Length = 1405 Score = 684 bits (1765), Expect = 0.0, Method: Composition-based stats. Identities = 289/1562 (18%), Positives = 534/1562 (34%), Gaps = 340/1562 (21%) Query: 5 LKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGP 64 +K + ++ + P+ EV + + P G + Sbjct: 1 MKDPIDDQIPKRIKHLQFGINGPEEFVKDGTVEVSRRDLYTMTDRSPAEHGALDLHMGTS 60 Query: 65 VKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRI 124 ++ + C CG + G+++LA P HI + K+ + + Sbjct: 61 ---------------NKQINCATCGESMADCM---GHFGYVKLALPVFHIGYFKATLTIL 102 Query: 125 GLLLD----MPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKM 180 + + L D E+ + + + G+ NL R QI + DA Sbjct: 103 QNICKDCSSVLLSDQEKRQFLKD--LRRPGIDNLRRSQICKRINDHCKKMRRCSKCDAMQ 160 Query: 181 GA-----------EAIQALLKSMDLEQECEQLREE------------------LNETNSE 211 G E + + KS D E+ +E LN Sbjct: 161 GVVKKAGPLKIIHERFRYVRKSQDDEENFRHSFDEALKTIPELKMHLSKAHDDLNPLKVL 220 Query: 212 TKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRR 271 K++T L +PE ++ +P P +RP V +G DL Sbjct: 221 NLFKQITPVDCELLGMDPEHGRPENLLWRYVPAPPVCIRPSVAQEGATT-EDDLTVKITE 279 Query: 272 VINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMI 331 +I ++ ++ L P + + +Q ++ +++ G + +P++ + Sbjct: 280 IIWTSSLIRAALSKGTPISNLMEQWEFMQLSIAMYINSEMPGLRPSDMPSKPIRGFCQRL 339 Query: 332 KGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLA 391 KGKQGRFR NL GKRVD+SGR+VI+ P LR+ Q +P ++A L P + L Sbjct: 340 KGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDQVAVPYRIAKILTFPERVTTQNKKHLQ 399 Query: 392 TTIKA-------AKKMVERE-----------------EAVVWDILDEVIRE-HPVLLNRA 426 I+ A +++RE + + DI++ + + VL NR Sbjct: 400 DCIRNGPDVHPGANYVIDRESGFKRFLRFGNRNRIADDLKIGDIVERHLHDNDVVLFNRQ 459 Query: 427 PTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMS 486 P+LH+L I A + + ++ + VC YNADFDGD+M +HVP T EA+ EA LM Sbjct: 460 PSLHKLSIMAHLVKVRPWRTLRFNECVCGPYNADFDGDEMNLHVPQTEEAKTEALELMGI 519 Query: 487 TNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHA 546 NN++SP NGEPII +QD + Y ++ + + Y ++ Sbjct: 520 KNNLVSPRNGEPIIAATQDFITAAYLLSLKDTFLDRKSIS------NICCYMMDASTHID 573 Query: 547 RVKVRITEYEKDANGELVAKTSLKDTTVGRAILW----------------MIVPKGLPYS 590 I + G+ V +K + ++ + PK Sbjct: 574 LPPPAIIKPRCLWTGKQVFTVLMKPNRFSKVLVNLDAKTRSFSRIKSKTPEMCPKDGYLM 633 Query: 591 IVN-----QALGKKAIS-----KMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVG 640 I N + K + + R G ++ + G S+G Sbjct: 634 IRNSEIIAGVVDKSVVGDGKKDSLFYVILRDYGALEAAEAITRLSKMCARFLGNRGFSIG 693 Query: 641 IDDM----VIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKA 696 I+D+ + +K ++++A A + Q+ G++ ++ + A + +SK Sbjct: 694 IEDVQPGKSLSSQKEILVNKAYATSDDFIMQYAKGILECQPGMDQEATLEAKISSTLSKV 753 Query: 697 MMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM-----AKPD 751 D + ++ NS +MA G++GS + Q+ G PD Sbjct: 754 RDD--------VGEICMDELGPANSPLIMATCGSKGSKINVSQMVACVGQQIISGKRVPD 805 Query: 752 GS---------------IIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYL 796 G + + ++ +F GL ++ R+GL DTA+KTA +GY+ Sbjct: 806 GFQDRSLPHFHKNSKHPLAKGFVSNSFYSGLTPTEFLFHAISGREGLVDTAVKTAETGYM 865 Query: 797 TRRLVDVAQDLVVTEDDCGT------------HEGIMMTPVIEGGDVKEPLRDRV----- 839 +RRL+ +DL D +G+ T + G E R + Sbjct: 866 SRRLMKSLEDLSSAYDGTVRSSNSDVVQFVYGDDGLDPTYMEGDGQAVEFKRTWIHSVNL 925 Query: 840 -----------------LGRVTAED-VLKPGTADILVPRNTLLHEQWCDLL--------- 872 + R + L D + T + E L Sbjct: 926 NYDRHDSAMLPYEIIDYVNRALDDPKFLTNCNRDFIETIRTFVIENIAKYLASVRERRDL 985 Query: 873 -------------EENSVDAVKVRSVVSCDTDFGVCAH--------CYGRDLARGHIINK 911 + + V S + V C + + Sbjct: 986 APMLEEPDMDDLDDMEGDEFAPVAKRKSVENIIRVTEKQLRSFVDRC--WEKYMRAKVEP 1043 Query: 912 GEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSG 971 G A+G I AQSIGEPGTQ+T++TFH G A++ ++ + +K ++N++ Sbjct: 1044 GTAVGAIGAQSIGEPGTQMTLKTFHFAGVAAQT------------TLGVPRIKEIINAAK 1091 Query: 972 KLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEV 1031 + +L R + S +V G + E+ + + + PV T + Sbjct: 1092 TISTPIITGQLI----NDRDERSARVVKGRI------EKTYLKDVTSYIEEVYGPVTTYL 1141 Query: 1032 SGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIP 1091 S V F + Q D + + ++ + + + + + Sbjct: 1142 SIQVNFDTIS-----KLQLDITLADIAAAIWNTPKLKIPSQQVTVNNTLQQIHVHTSSDG 1196 Query: 1092 GTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPK 1151 + Y+ +L+ ++ +A G+P + Sbjct: 1197 KSSETEVYY-------RLQTYKRVLPDVVVA--------------GIPTINR-------- 1227 Query: 1152 EPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVIS 1211 +++ + SG + E G + ++ T Sbjct: 1228 --SVINQESGKIELFMEGTGLQAVMNTEGIVGTKTSTNHVM------------------- 1266 Query: 1212 DGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGS 1271 ++ + G+ A I++E+ G+ ++ +HI ++ M K + Sbjct: 1267 -------EMKDVLGIEAARYSIISEIGYTMAKHGLTVDPRHIMLLGDVMTCKGEV----- 1314 Query: 1272 SDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLA--TESFISAASFQETT 1329 LGIT+ +A +S ++ ASF++TT Sbjct: 1315 -----------------------------------LGITRFGVAKMKDSVLALASFEKTT 1339 Query: 1330 RVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQVTAEDA 1389 L AA +D + G+ E +++G+L P GT ++ RR E P+ D Sbjct: 1340 DHLFNAAARFAKDSIEGISECIVLGKLAPIGTNVF----QLIRRTEEEEEQKPKELLFDT 1395 Query: 1390 SA 1391 + Sbjct: 1396 PS 1397 >UniRef50_Q84KP6 DNA-directed RNA polymerase n=6 Tax=Eukaryota RepID=Q84KP6_CYAME Length = 1819 Score = 682 bits (1761), Expect = 0.0, Method: Composition-based stats. Identities = 208/922 (22%), Positives = 361/922 (39%), Gaps = 134/922 (14%) Query: 3 DLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIF 62 DL F + + + A++ L SPD +R S V+ + + P+ G+ R+ Sbjct: 4 DLQTF--SSAELKAVGAVQFGLLSPDELRRLSVVRVEY--DVAFERGVPKAGGVLDPRLG 59 Query: 63 GPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFL----- 117 +++ C CE + GHIEL P ++ L Sbjct: 60 AIDRNFPCAT------------CE------GSSIDCPGHFGHIELVKPVFNVLMLSTVLK 101 Query: 118 --KSLPSRIGLLL--------------DMPLRDIERVLYFESYVVIEGGMTNLERQQILT 161 + + LL P++ + V + + GG + +Q++ Sbjct: 102 TLRCVCYYCSRLLVDGSDSRMLRAARIKDPVKRFQAVFQLCNGTRVCGGGADSSEEQLML 161 Query: 162 EEQYLDALEEFGD------EFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRK 215 L+A E G + + ++ L + D E + ++EL + + Sbjct: 162 PAAVLEARERIGKPREGCGNLQPHVTRDGLRILAEFPDAEAFAAERKQELAAERVQQIFR 221 Query: 216 KLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINR 275 + L F ++PEWM+L+VLPV PP +RP + +D DL +I Sbjct: 222 HIRDEDLELLGFHPRFSRPEWMVLSVLPVPPPHVRPSIQMDAVSRGEDDLTFKLGDIIKA 281 Query: 276 NNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRA-ITGSNKRPLKSLADMIKGK 334 NN L+RL AP ++R + +LQ V ++N G T + RPLKS+A +KGK Sbjct: 282 NNALQRLEAEGAPAHVIREQYVLLQFHVATFMNNDLPGMPRATLRSGRPLKSIAQRLKGK 341 Query: 335 QGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI 394 +GR R NL+GKRV++S R+VIT P L L + G+P+ +A+ L P + + L + Sbjct: 342 EGRVRNNLMGKRVNFSARTVITADPQLALDEVGVPRSVAMTLTYPEVVTPYNIDRLWEAV 401 Query: 395 KAAKK-------------------MVEREEAVVWD----ILDEVIREHPVLLNRAPTLHR 431 + V R +V + + ++ VL NR P+LHR Sbjct: 402 RNGPNAYPGALFVIRNDGKRIALQFVRRSADIVLEPGCVVERHLLNGDLVLFNRQPSLHR 461 Query: 432 LGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNIL 491 + I ++ +++ + YNADFDGD+M +HVP + E + E + LM NI+ Sbjct: 462 MSIMGHRVRILPYSTFRMNLSATSPYNADFDGDEMNLHVPQSEEVRAEIKELMAVPKNIV 521 Query: 492 SPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVK- 549 SP P++ QD +LG T RD + L L R+ Sbjct: 522 SPQANRPVMGIVQDSLLGCMLFTLRDTFLEEDTVFNLLL----------HLPHFDGRIPA 571 Query: 550 VRITEYEKDANGELVAKTSLKD----------------TTVGRAILWMIVPKG-LPYSIV 592 I + G+ + L D T + + +++ G L IV Sbjct: 572 PAILKPRPLWTGKQIFSLLLPDGVNLERLSNGHPDHERTIMTPSDTRVLIQNGELITGIV 631 Query: 593 NQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEK--- 649 ++ + +++ ++ G + T I + ++G S+GI D + Sbjct: 632 DKRTVGSSAGSLIHVTWKESGPERTSQLISDIQLLINYWLMQNGMSIGIGDCIADAHTMA 691 Query: 650 -KHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVIN 708 + I EA+ EV ++ Q G + +++ + A +RV + D Sbjct: 692 AINRTIQEAKDEVRQLIRLAQEGRLERQPG-KTMLESFEACVNRVLNSARDK-------A 743 Query: 709 RDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSI-------------- 754 +E + N+I M +G++GS + Q+ G I Sbjct: 744 GGFAQESLLPSNNIKRMVSAGSKGSFINVSQIVACVGQQNVEGKRIPYGFRRRTLPHFVV 803 Query: 755 ------IETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLV 808 + ++ GL + F G R+GL DTA+KTA +GY+ RRL+ +D+ Sbjct: 804 DDLSPEARGFVENSYLRGLTPEEVFFHAMGGREGLIDTAVKTAETGYIQRRLMKAMEDIR 863 Query: 809 VTEDDCGTHEGIMMTPVIEGGD 830 + D + + + G D Sbjct: 864 IEYDGTVRNSLGDVMQFLYGDD 885 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 90/486 (18%), Positives = 165/486 (33%), Gaps = 98/486 (20%) Query: 910 NKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNS 969 GE +G +AAQS+GEP TQ+T+ TFH G +++ + + +K ++N Sbjct: 1073 TPGEMVGAVAAQSLGEPATQMTLNTFHFAGVSAKNVT-----------LGVPRLKELINV 1121 Query: 970 SGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVIT 1029 + + S + + + G+ KE + + + V + DP V Sbjct: 1122 ARQAKTPS----VTVYLKSGKDKELANIVQSELEQCRLRDVVESSAIYFDPDPANTVVEA 1177 Query: 1030 EVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVL 1089 + + D+ D + L ++ D+ L+ G D+ Sbjct: 1178 DREWVRDYFDLPDEMDRPERLSPWLLRIVLSTEMMIDKRLRLSDVARRLR--AEFGGDLS 1235 Query: 1090 IPGTDMPAQYFLPGKAIVQL-EDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEAR 1148 + +D A+ ++ + G + G I ES D L + Sbjct: 1236 VVYSDDNAEQL-----VMHIRMAGDEYEKGALGVPILGESERLDDTLNLLGPG----DMT 1286 Query: 1149 RPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV---- 1204 ++ A SG V + KR I D + IP R++ + + +RV Sbjct: 1287 AGGNQSLEALDSGTVEEQDDVFLKR---IELALLEDMQLKGIPGIRKVFLRQTQRVLFDP 1343 Query: 1205 ERGDVI--------SDG------------------PEAPHDILRLRGVHAVTRYIVNEVQ 1238 E G ++G ++L++ G+ A + + NE+ Sbjct: 1344 EAGSFRSAPEWVLDTEGTALLAVLSHPDVDARRTISNEITEVLQVLGIEAARQALYNEMY 1403 Query: 1239 DVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKV 1298 V G + +H+ ++V M + G + SR Sbjct: 1404 AVLSFDGSSVGYRHLALLVEVMTCR-------------GMLIPVSRF------------- 1437 Query: 1299 GATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIP 1358 GI + + +F+ET +L AA G RD G+ + VI+G+ Sbjct: 1438 ---------GINR---LETGPLMRCTFEETVEILATAATFGVRDACEGVSQAVILGQRAK 1485 Query: 1359 AGTGYA 1364 GTG Sbjct: 1486 VGTGAF 1491 >UniRef50_Q0U9K8 DNA-directed RNA polymerase n=242 Tax=root RepID=Q0U9K8_PHANO Length = 1720 Score = 680 bits (1755), Expect = 0.0, Method: Composition-based stats. Identities = 290/1551 (18%), Positives = 544/1551 (35%), Gaps = 289/1551 (18%) Query: 9 KAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDY 68 +++ I+ L SP+ I++ S ++ PET++ KP GL R+ + Y Sbjct: 8 QSKCPLRTIKEIQFGLLSPEEIKAMSVCQIMFPETMDESNTKPREHGLNDPRLGTIDRMY 67 Query: 69 ECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLL 128 C C ++ +V GHIELA+P H++ + + +G ++ Sbjct: 68 SCA---------------TCKEDI---QVCPGHFGHIELATPVFHVFMV---LTALGFVV 106 Query: 129 DMPLRDIERVLYFESYVVIEGGMTNLERQ-QILTEEQYLDAL---EEFGDEFDAKMGAEA 184 + + +E V + + + + + ++ D + + G E Sbjct: 107 KIK-KILETVCHNCGLITADYNHPDWANAIRTKDAKKRFDKIWRMSRTKKNCEQDTGEED 165 Query: 185 IQA-----------------LLKSMDLEQECEQLR-----------EELNETNSETKRKK 216 + + + L + + E L ++ K Sbjct: 166 PKKAPKIPHGGCGNTNPDTIRKEGVKLTATYKPKKGEDSDGQGDRKEVLTPQHALNVFKL 225 Query: 217 LTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDG---GRFATSDLNDLYRRVI 273 L+ L +PEWMI+TVLPV PP +RP + +DG G DL +I Sbjct: 226 LSDNTLALLGLNADYARPEWMIMTVLPVPPPPVRPSISVDGTGQGMRGEDDLTYKLGDII 285 Query: 274 NRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAI-TGSNKRPLKSLADMIK 332 N R++ + AP I+ + ++Q V +DN G + RPLK++ +K Sbjct: 286 RANQRVQECISEGAPQHILNEFEALVQYHVATYMDNDANGIPPSNQKSGRPLKTIRGRLK 345 Query: 333 GKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLAT 392 GK+GR R NL+GKRVD+S R+VIT P L L Q G+P+ +A L P + K + L + Sbjct: 346 GKEGRLRGNLMGKRVDFSARTVITGDPNLSLDQVGVPRSIARTLTYPEVVTKFNISKLTS 405 Query: 393 TIKAAKKMVEREEAVV-----------------------WDILDEVIREHPVLLNRAPTL 429 ++ V+ W + + + ++ NR P+L Sbjct: 406 LVRNGPNQHPGANYVIKSDGVRLDLKHNKNLDDLRLQYGWKVERHIDDDDVIIFNRQPSL 465 Query: 430 HRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNN 489 H+ + ++ +++ V + YNADFDGD+M +HVP + E + E + L M Sbjct: 466 HKESMMGHRVKVMPYSTFRMNLSVTSPYNADFDGDEMNLHVPQSDETRAEIQNLCMVPKQ 525 Query: 490 ILSPANGEPIIVPSQDVVLGLYYMTRDCVNA-------------KGEGMVLTGPKEAERL 536 I+SP +P++ QD +LG+Y M+R +G+V R Sbjct: 526 IVSPQKNQPLMGIVQDTLLGVYKMSRRDNFLPIEQVMCIMMWVPDWDGIVPEPAILKPRP 585 Query: 537 YRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQAL 596 +G + + + D + + +D ++ +I L V + + Sbjct: 586 LWTGKQIISMAFPKEVNIWRSDGDSKPSPWNDFQDKSL------LIKGGELLLGSVTKKI 639 Query: 597 GKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVI-PEKKHEI-- 653 +++ + L V F + + G S+GI D V PE +I Sbjct: 640 VGATAGGVIHIIFNELSSGEAVKFFNSCQRIVNWWLLHHGFSLGIGDTVPDPETAAKIAS 699 Query: 654 -ISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQ 712 +++A+A+V EI + + + L Sbjct: 700 EVAKAKAKVEEIVLEATRDELEPLPGM--------TIRGTFESKVQKYLNEGREGGGTAA 751 Query: 713 EEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAK-----PDGSIIET---------- 757 + FN++ SG++GS I Q+ + G A P G T Sbjct: 752 QNSLKDFNNVVQTVISGSKGSTVNISQMVSLVGQQAVEGQRIPFGFKYRTLPHFTKDDYS 811 Query: 758 -----PITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTED 812 + ++ GL ++F R+GL DTA+KTA +GY+ RRLV +D++V D Sbjct: 812 PESRGFVENSYLRGLTPAEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYD 871 Query: 813 DCGTHEGIMMTPVIEGGDVKE------------PLRDRVLGRVTAEDVLKPGTADI---- 856 + + I G D + L + +V DVL I Sbjct: 872 GTVRNSLGDIIEFIYGEDGLDGGFIENQKIDMITLSEAKFEKVFKVDVLGTDAPQIPTSK 931 Query: 857 LVPRNT-----LLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINK 911 L N + + ++ +D +R+V+ D + + L +I Sbjct: 932 LAGANEFQGDVDIQRHLDEEFDQIKIDREYLRTVIGQDD-----SQQFQLPLNIARMIES 986 Query: 912 GEA-IGVIAAQSIGE--PGTQLT--MRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSV 966 + G+ Q++ + P T++ +R R S++ + + Sbjct: 987 AQMRFGIKKGQNVSDLHP-TEVVCQVRDLLDSLVVIRGNDPLSVEAQASATYLFKCHLRS 1045 Query: 967 VNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQ--VAGGETVAN----- 1019 + ++V+ ++ L G ++ + A GE V +++ Sbjct: 1046 RLAFKRVVVEESLSKKALDYILGELQDRFL-----KAAVAPGEMVGVLAAQSIGEPATQM 1100 Query: 1020 -WDPHTMPVITEVS---GFVRFTDMID-------GQTITRQTDELTGLSSLVVLDSAERT 1068 + ++ + G R ++++ + RQTD+ G VL S Sbjct: 1101 TLNTFHFAGVSSKNVTLGVPRLKEILNIAANIKTPSMLVRQTDKNAGQQEAKVLRSRIEL 1160 Query: 1069 AGGKDLRPALKIVDAQGN--DVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQ 1126 + L ++++ ++ DM YF+ + +E + + R+ Sbjct: 1161 TTLRSLTQSVELYYDPEIQATLVESDQDMVESYFIVPEENEVIESQSK-----WVLRVIL 1215 Query: 1127 ESGGTKDITGGLPRVADLFEARRPKEPAILAEISG------IVSFGKETKGKRRLVITPV 1180 + D G+ VA + A++ V F + K+ Sbjct: 1216 DRKKLLDKNIGISEVAGTIKREFSPNLAVIFSDENADEQVMRVRFIWDGNLKQDDEDEDE 1275 Query: 1181 DGSDPYEEM------------IPKWRQLNVFEGERVERGD--VISDGPEAPH-------- 1218 ++ + + + E V + + P Sbjct: 1276 RDERWMRKLETHLLDGVVLRGLKGVERAFIREDNVVVMNEDRSLVLSKSDPRCKEWVLDT 1335 Query: 1219 ------DILRLRGVHAVTRY-------------------IVNEVQDVYRLQGVKINDKHI 1253 ++L + GV Y +++E+ V G +N +H+ Sbjct: 1336 TGTSLAEVLAVEGVDGTKTYSNSFIEILGVLGIEAARAGLLHELGMVLSFDGSYVNHRHM 1395 Query: 1254 EVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKAS 1313 ++V M ++ L+ IT+ Sbjct: 1396 ALLVDIMTQR----------------------------------------GMLMAITRHG 1415 Query: 1314 LATE--SFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362 + + SF+ET +L EAA G+ D+ RG+ EN+++G+L P GTG Sbjct: 1416 INRNDTGALMRCSFEETVEILLEAAGFGELDDCRGVSENIMLGQLAPMGTG 1466 >UniRef50_C7P941 DNA-directed RNA polymerase n=26 Tax=root RepID=C7P941_METFA Length = 891 Score = 679 bits (1752), Expect = 0.0, Method: Composition-based stats. Identities = 231/930 (24%), Positives = 383/930 (41%), Gaps = 136/930 (14%) Query: 14 TEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCG 73 +E I L SPD IR S ++ P+T + + P GL R+ Sbjct: 9 PKEIGEIMFGLLSPDYIRQMSVAKIVTPDTYDEDGY-PIDGGLMDTRL------------ 55 Query: 74 KYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLR 133 + G++C+ CG + + GHIELA P HI F K+ I +L Sbjct: 56 ---GVIDPGLVCKTCGGRIGECP---GHFGHIELAKPVIHIGFAKT----IYKILKAVCP 105 Query: 134 DIERVLYFESYVVIEGGMTNLERQQILTEEQYLD--------ALEEFGDEFDAKMGAEAI 185 RV ++ +R++IL + + L+ EE E Sbjct: 106 HCGRV-----------AISETKRKEILEKMEKLERDGGNKWEVCEEVYKEASKVTICPHC 154 Query: 186 QALLKSMDLEQECEQLREELNETNS------ETKRKKLTKRIKLLEAFVQSGNKPEWMIL 239 + + E+ R + NE + +K+ +L +PEWM+L Sbjct: 155 GEIKYDIKFEKPTTYYRIDGNEEKTLTPSDVREILEKIPDEDCILLGLNPEVARPEWMVL 214 Query: 240 TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRML 299 TVLPV P +RP + L+ G + DL +I NNRL+ ++ AP++I+ + +L Sbjct: 215 TVLPVPPVTVRPSITLETGERSEDDLTHKLVDIIRINNRLEENIEGGAPNLIIEDLWNLL 274 Query: 300 QEAVDALLDNGRRG-RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVG 358 Q V+ DN G + RPLK+LA +KGK+GRFR NL GKRV++S R+VI+ Sbjct: 275 QYHVNTYFDNEAPGIPPAKHRSGRPLKTLAQRLKGKEGRFRYNLAGKRVNFSSRTVISPD 334 Query: 359 PYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAA-----------KKMVER---- 403 P L +++ G+P+ +A EL P K + + ++ +KM+ R Sbjct: 335 PCLSINEVGVPEIVAKELTVPEKVTKYNIERIRQLLRNGSEKHPGVNYVIRKMIGRDGVE 394 Query: 404 ----------------EEAVVWDILD-EVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKA 446 E DI++ ++ VL NR P+LHR+ I A ++ + Sbjct: 395 QEYKVKITESNKDFWAENIKEGDIVERHLMDGDIVLYNRQPSLHRMSIMAHRVRVLPYRT 454 Query: 447 IQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDV 506 + + VC YNADFDGD+M +HVP + EA+ EA ALM+ +ILSP G PII D Sbjct: 455 FRHNLCVCPPYNADFDGDEMNLHVPQSEEARAEAEALMLVEKHILSPRFGGPIIGAIHDF 514 Query: 507 VLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGL----ASLHARVKVRITEYEKDANGE 562 + G Y +T ++L + L+ L++ K+ K N Sbjct: 515 ISGAYLLTSSYFTKDEATLILRSGGIKDELWEPDKVENGVPLYSGKKIFSKALPKGLNLR 574 Query: 563 LVAKTSLKDTTVGRA----ILWMIVPKG-LPYSIVNQALGKKAISKMLNTCYRILGLKPT 617 AK K + ++++ G L ++++ +L+T + G + Sbjct: 575 YKAKICRKCDECKKEECPYDAYVVIKDGELIKGVIDKNGYGAEAGLILHTIVKEFGPEAG 634 Query: 618 VIFADQIMYTGFAYAARSGASVGIDDMVIPE----KKHEIISEAEAEVAEIQEQFQSGLV 673 F D G + GIDD +PE + ++++EAE +V EI E+++ G + Sbjct: 635 RKFLDSATKMAIRAVMLRGFTTGIDDEDLPEEALKEIEKVLNEAEEKVKEIIEKYERGEL 694 Query: 674 T-------AGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMA 726 R + ++ A D+ + L + N +MA Sbjct: 695 ELLPGLDLEESREAYINNVLREARDKAGEIAEKYLGLD---------------NHAVIMA 739 Query: 727 DSGARGSAAQIRQLAGMRGLMAKPDGSIIE--------------------TPITANFREG 766 +GARG+ + Q+A G + I + +++++G Sbjct: 740 VTGARGNILNLTQMAACLGQQSVRGRRIFRGYRGRVLPHFEKGSLDAKSHGFVRSSYKKG 799 Query: 767 LNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVI 826 L+ ++F G R+GL D A++TA SGY+ RRL++ QDL D +M + Sbjct: 800 LSPTEFFFHAMGGREGLVDQAVRTAQSGYMQRRLINALQDLKTEFDGTVRDSRGVMIQFM 859 Query: 827 EGGDVKEPLRDRVLGRVTAEDVLKPGTADI 856 G D +P+ V + ++ Sbjct: 860 YGEDGVDPMLADRGKSVNIDRIIDKVKMKY 889 >UniRef50_Q9LVH0 DNA-directed RNA polymerase n=7 Tax=Eukaryota RepID=Q9LVH0_ARATH Length = 1383 Score = 677 bits (1747), Expect = 0.0, Method: Composition-based stats. Identities = 299/1500 (19%), Positives = 523/1500 (34%), Gaps = 312/1500 (20%) Query: 16 EFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKY 75 + +I ++ S + + +V + +FKP +GL R+ P Sbjct: 22 KIKSINFSVLSDLEVMKAAEVQVWNIGLYD-HSFKPYENGLLDPRMGPP----------- 69 Query: 76 KRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFL-------KSLPSRIGLLL 128 ++ IC C G+++L P ++ + K + R +L Sbjct: 70 ----NKKSICTTCEGNFQNCP---GHYGYLKLDLPVYNVGYFNFILDILKCICKRCSNML 122 Query: 129 -----------DMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQY-------LDALE 170 M +E + E + + + Q+I+T ++ Sbjct: 123 LDEKLYEDHLRKMRNPRMEPLKKTELAKAVVKKCSTMASQRIITCKKCGYLNGMVKKIAA 182 Query: 171 EFGDEFDA---KMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEA- 226 +FG K+ I ++ ++ L L KR+ + Sbjct: 183 QFGIGISHDRSKIHGGEIDECKSAISHTKQSTAAINPLTYVLDPNLVLGLFKRMSDKDCE 242 Query: 227 FVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLA 286 + +PE +I+T + V P +RP V + G + +DL +++I N L ++L Sbjct: 243 LLYIAYRPENLIITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILGNASLHKILSQP 302 Query: 287 APDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKR 346 +Q V +++ RG + PL + +KGK GRFR NL GKR Sbjct: 303 TSSPKNMQVWDTVQIEVARYINSEVRG-CQNQPEEHPLSGILQRLKGKGGRFRANLSGKR 361 Query: 347 VDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAA--------- 397 V+++GR+VI+ P L++ + G+P MA L P + + L ++ Sbjct: 362 VEFTGRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGARN 421 Query: 398 ---------------KKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLI 442 +K + E A+ + + VL NR P+LHR+ I ++ Sbjct: 422 VRYPDGSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQPSLHRMSIMCHRARIM 481 Query: 443 EGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVP 502 + ++ + VC YNADFDGD+M +HVP T EA+ EA LM NN+ +P NGE ++ Sbjct: 482 PWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGEILVAS 541 Query: 503 SQDVVLGLYYMTRDCVN-----------AKGEGMVLTGPKEAERL----------YRSGL 541 +QD + + +TR G+GM L S L Sbjct: 542 TQDFLTSSFLITRKDTFYDRAAFSLICSYMGDGMDSIDLPTPTILKPIELWTGKQIFSVL 601 Query: 542 ASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAI 601 +A ++V +T K+ N + + + ++ + + + LG Sbjct: 602 LRPNASIRVYVTLNVKEKNFKKGEHGFDETMCINDGWVYFRNSELISGQLGKATLGNGNK 661 Query: 602 SKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMV----IPEKKHEIISEA 657 + + R + +++ + G S+GIDD+ + +++ + I Sbjct: 662 DGLYSILLRDYNSHAAAVCMNRLAKLSARWIGIHGFSIGIDDVQPGEELSKERKDSIQFG 721 Query: 658 EAEVAEIQEQFQSGLVT-------AGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRD 710 + E+F G + A ++ I + KA M L Sbjct: 722 YDQCHRKIEEFNRGNLQLKAGLDGAKSLEAEITGILNTIREATGKACMSGLHWR------ 775 Query: 711 GQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAK-----PDGSI----------- 754 NS +M+ G++GS I Q+ G PDG I Sbjct: 776 ---------NSPLIMSQCGSKGSPINISQMVACVGQQTVNGHRAPDGFIDRSLPHFPRMS 826 Query: 755 ----IETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVT 810 + + +F GL ++F T G R+GL DTA+KTA++GY++RRL+ +DL+V Sbjct: 827 KSPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVH 886 Query: 811 EDDCGTHEGIMMTPVIEGGDVKEP-LRDRVLGRVTAEDVL---KPGTADILVPRNTLLHE 866 D+ + + G D +P L + G + L T L E Sbjct: 887 YDNTVRNASGCILQFTYGDDGMDPALMEGKDGAPLNFNRLFLKVQATCPPRSHHTYLSSE 946 Query: 867 QWCDLLEENSVDAVKVR----------------------SV------------------- 885 + EE V K R S Sbjct: 947 ELSQKFEEELVRHDKSRVCTDAFVKSLREFVSLLGVKSASPPQVLYKASGQKYEILPLIY 1006 Query: 886 VSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAA 945 ++ +C Y R I G AIG I AQSIGEPGTQ+T++TFH G AS Sbjct: 1007 INMQVFVKICVFRY-----REKKIEAGTAIGTIGAQSIGEPGTQMTLKTFHFAGVASMNI 1061 Query: 946 AESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAK 1005 + + + ++N+S + + EL E S + G + Sbjct: 1062 TQG-----------VPRINEIINASKNISTPVISAEL----ENPLELTSARWVKGRIEKT 1106 Query: 1006 GDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSA 1065 G+ E + ++ +I +D + I +T V +S Sbjct: 1107 TLGQVAESIEVLMTSTSASVRII------------LDNKIIEEACLSIT---PWSVKNSI 1151 Query: 1066 ERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIP 1125 +T P +K+ D ND+ + T + Sbjct: 1152 LKT-------PRIKLND---NDIRVLDTGL------------------------------ 1171 Query: 1126 QESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDP 1185 DIT + + F K ++GI + + + +DG Sbjct: 1172 -------DITPVVDKSRAHFNLHNLKNVLPNIIVNGIKTVERVVVAEDMDKSKQIDGKTK 1224 Query: 1186 YEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQG 1245 ++ + L V G G + ++ + G+ A I++E+ V G Sbjct: 1225 WKLFVEGTNLLAVM-GTPGINGRTTTSNNVV--EVSKTLGIEAARTTIIDEIGTVMGNHG 1281 Query: 1246 VKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRD 1305 + I+ +H+ ++ M Y + Sbjct: 1282 MSIDIRHMMLLADVMT----------------------------------------YRGE 1301 Query: 1306 LLGITKASLAT--ESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGY 1363 +LGI + + +S + ASF+ T L AA +GK D + G+ E VI+G + GTG Sbjct: 1302 VLGIQRTGIQKMDKSVLMQASFERTGDHLFSAAASGKVDNIEGVTECVIMGIPMKLGTGI 1361 >UniRef50_B9GIK9 DNA-directed RNA polymerase n=2 Tax=Magnoliophyta RepID=B9GIK9_POPTR Length = 1394 Score = 672 bits (1734), Expect = 0.0, Method: Composition-based stats. Identities = 291/1524 (19%), Positives = 521/1524 (34%), Gaps = 318/1524 (20%) Query: 14 TEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCG 73 +I+ + S I S +V + + K GL R+ P Sbjct: 21 PRRIKSIQFSTMSGSDILKASECQVHLGQYYD-ANKKAIVGGLLDTRMGAP--------- 70 Query: 74 KYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLR 133 ++ C+ CG T G++ L P ++ +L ++ + + R Sbjct: 71 ------NKHGTCQTCGGSFTDCP---GHFGYLNLVLPVYNVGYLSTILDILKCICKSCSR 121 Query: 134 DIERVLYFESYVVI--EGGMTNLERQQILTE-----------EQYLDALEEFGDEFDAKM 180 + +SY+ L++ +++ E + + + K Sbjct: 122 VLVDEKLRKSYLKRMRNPRTEPLKKNELMKEIVKKCSSMASSKAVKCLRCGYMNGMVKKA 181 Query: 181 GA-------------EAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEA- 226 G+ ++ ++ +E + + L +R+ + Sbjct: 182 GSVVGIIHDRSKLIDGYLEECKSAIGHTREARAPIGLATYILNPVRVLSLFQRMVEEDCE 241 Query: 227 FVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLK-RLLDL 285 + +PE +I+T + V P +RP V +G + +D+ + +++I N +L+ LL+ Sbjct: 242 LLYLQGRPEKLIITTIAVPPISIRPSVFTEGSQSNENDITERLKQIIQFNAKLRLELLEG 301 Query: 286 AAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGK 345 I LQ V +++ R + RPL + GKQGRFRQNL GK Sbjct: 302 RRTGIKYLIGWDELQAVVTLYINSDVR-IPLDMQVGRPLSGFVQRLTGKQGRFRQNLAGK 360 Query: 346 RVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREE 405 RV+++GR+VI+ P L++ + +P MA L P + L + Sbjct: 361 RVEFTGRTVISPDPNLKITEVAIPIHMARILTYPERVTHHNIEKLRQCVNNGSYKYPGAR 420 Query: 406 AVVWD------------------------ILDEVIREHPVLLNRAPTLHRLGIQAFEPVL 441 V + + + VL NR P+LHR+ I + Sbjct: 421 MVTYPDGSSKMLTGNYRKRIAEELKSGCIVHRHLEDGDVVLFNRQPSLHRMSIMCHRARI 480 Query: 442 IEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIV 501 + + ++ + VC YNADFDGD+M +HVP T EA+ EA LM NN+ +P NGE ++ Sbjct: 481 MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAFLLMGVQNNLCTPKNGEILVA 540 Query: 502 PSQDVVLGLYYMTRDCVN-----------AKGEGMVLTGPKEAERL----------YRSG 540 +QD + + +TR +GM L L S Sbjct: 541 STQDFLTSSFLITRKDTFYDRAAFSLMCSYMNDGMDLVDLPTPSVLKPIELWTGKQLFSV 600 Query: 541 LASLHARVKVRITEYEKDANGELVAKTSLKDT-TVGRAILWMIVPKGLPYSIVNQALGKK 599 L HA V+V + K+ N K K+ T+ ++ +++ LGK Sbjct: 601 LLRPHANVRVYVNLILKEKNYSRPNKEHKKERETMCPNDGYVYFRN---SELISGQLGKA 657 Query: 600 AIS-----KMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDM----VIPEKK 650 + + + R +++ + G S+GIDD+ + ++K Sbjct: 658 TLGNGNKDGLYSILLRDYNAYAAATCMNRLAKLSARWIGNHGFSIGIDDVQPGKKLIDEK 717 Query: 651 HEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRD 710 + IS ++ + G + + + +R++K + D Sbjct: 718 GKTISNGYRHCNKLIADYNGGRLALKSGCDATQTLETEITERLNKLREE--------AGD 769 Query: 711 GQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAK-----PDGSI----------- 754 ++ NS +M+ G++GS I Q+ G + PDG I Sbjct: 770 VCMKELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGSRAPDGFIDRSLPHFPRKS 829 Query: 755 ----IETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVT 810 + + +F GL+ ++F T G R+GL DTA+KTA++GY+ RRL +DL V Sbjct: 830 KTPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMARRLSKGLEDLCVQ 889 Query: 811 EDDCGTHEGIMMTPVIEGGDVKEP-----------LRDRVLGRVTA------EDVLKPGT 853 D+ G + + G D +P DR+ +V A ++ L P Sbjct: 890 YDNTVQDAGGGIVQFLYGDDGLDPAIMEGKAGVPLNFDRLFMKVKATCGAEEDEYLSPSD 949 Query: 854 ADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCY-------------- 899 +V L H D + S + S + C Sbjct: 950 ISNIVQSLLLKHNGTLDGICSESFRKS-LSSFLGDQAKRLECLMKLVDGVEVENFENIKN 1008 Query: 900 -----GRDLARGHI---------------------------INKGEAIGVIAAQSIGEPG 927 G I I G AIG I AQSIGEPG Sbjct: 1009 VEGLTGISKNTEKIAQKVSGITEKQLEVFLKTCLDRYVWKRIEPGTAIGAIGAQSIGEPG 1068 Query: 928 TQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDE 987 TQ+T++TFH G AS + + +K ++N + ++ + + E Sbjct: 1069 TQMTLKTFHFAGVASMNITQG-----------VPRIKEIINGAKRISTPI----ITVELE 1113 Query: 988 FGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTIT 1047 + ++ G + G+ VA + +T +R + I Sbjct: 1114 HNSNVNAARIIKGRIQKTVLGQ-VAKSIKIVMTSRSASVKVTLDMKTIREAQLSLDANIV 1172 Query: 1048 RQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIV 1107 R+ ++L++ + + + V G + PG D +F Sbjct: 1173 RE----------LILETPKIKRKLQRIN-----VLEDGKLEVFPGGDRNKLHF------- 1210 Query: 1108 QLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGK 1167 E K + GI + + Sbjct: 1211 --------------------------------------ELHSLKNMLPAVVVKGIKTVER 1232 Query: 1168 ETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVH 1227 +++L D P M + L G G ++ G+ Sbjct: 1233 VVIAQKKLDDAENDQGGPKYNMFVEGMGLQAVMGTEGVDGRK--TKSNHIIEVQETLGIE 1290 Query: 1228 AVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKI 1287 A + I++E++ G+ I+ +H+ ++ M Sbjct: 1291 AARKCIIDEIKGTMESHGMSIDIRHMMLLADVMTS------------------------- 1325 Query: 1288 ANRELEANGKVGATYSRDLLGITKASLAT--ESFISAASFQETTRVLTEAAVAGKRDELR 1345 +LGIT+ + +S + ASF++T+ L A+V GK D++ Sbjct: 1326 ---------------RGVVLGITRFGIQKMDKSVLMLASFEKTSDHLFNASVKGKDDKIE 1370 Query: 1346 GLKENVIVGRLIPAGTGYAYHQDR 1369 G+ E +I+G + GTG Q R Sbjct: 1371 GVSECIIMGIPVAIGTGVLKIQQR 1394 >UniRef50_B7Z6H4 DNA-directed RNA polymerase n=21 Tax=Coelomata RepID=B7Z6H4_HUMAN Length = 1369 Score = 672 bits (1734), Expect = 0.0, Method: Composition-based stats. Identities = 271/1485 (18%), Positives = 500/1485 (33%), Gaps = 255/1485 (17%) Query: 4 LLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRT-FKPERDGLFCARIF 62 + + + ++ I + SP+ +R + +V + P G+ R+ Sbjct: 2 VKEQFRETDVAKKISHICFGMKSPEEMRQQAHIQVVSKNLYSQDNQHAPLLYGVLDHRMG 61 Query: 63 GPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPS 122 KD CE CG + G+I+L P H+ + +++ Sbjct: 62 TSEKDR---------------PCETCGKNLADC---LGHYGYIDLELPCFHVGYFRAVIG 103 Query: 123 RIGLLLDMPLRDIERVLYFESYV--VIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKM 180 + ++ + + ++ + G+T L+++ + + + A Sbjct: 104 ILQMICKTCCHIMLSQEEKKQFLDYLKRPGLTYLQKRGLKKKISDKCRKKNICHHCGAFN 163 Query: 181 G----AEAIQALLKSMD--------------------------LEQECEQLREELNETNS 210 G ++ + + +E + +E LN Sbjct: 164 GTVKKCGLLKIIHEKYKTNKKVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQENLNPLVV 223 Query: 211 ETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLD-GGRFATSDLNDLY 269 K++ L KP +ILT L V P +RP V D DL Sbjct: 224 LNLFKRIPAEDVPLLLMNPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKL 283 Query: 270 RRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLAD 329 +I N+ +K+ A ++ + LQ +++ G + + K+ + Sbjct: 284 TEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQ 343 Query: 330 MIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRG 389 +KGKQGRFR NL GKRVD+SGR+VI+ P LR+ + +P +A L P K + Sbjct: 344 RLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINF 403 Query: 390 LATT------IKAAKKMVEREEAVVWDIL-------------------DEVIREHPVLLN 424 L + +++ + L +I VL N Sbjct: 404 LRKLVQNGPEVHPGANFIQQRHTQMKRFLKYGNREKMAQELKYGDIVERHLIDGDVVLFN 463 Query: 425 RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 484 R P+LH+L I A + + + + VC YNADFDGD+M +H+P T EA+ EA LM Sbjct: 464 RQPSLHKLSIMAHLARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLM 523 Query: 485 MSTNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVLTGPKEAERLYRSGLAS 543 + N+++P NGEP+I QD + G Y +T +D + +A ++ S L Sbjct: 524 GTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDR---------AKACQIIASILVG 574 Query: 544 LHARVKVR-----ITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPY--------- 589 ++KVR I + G+ + L+ + + Sbjct: 575 KDEKIKVRLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKGEDLCAN 634 Query: 590 ---------SIVNQALGKKAISK-----MLNTCYRILGLKPTVIFADQIMYTGFAYAARS 635 +++ ++ K + + R G ++ Y + Sbjct: 635 DSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNR 694 Query: 636 GASVGIDDMV----IPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAAND 691 G S+GI D+ + + K+E+++ + E E +G + A + Sbjct: 695 GFSIGIGDVTPGQGLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGC--------TAEE 746 Query: 692 RVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMA--- 748 + ++ L + NS MA G++GS I Q+ G A Sbjct: 747 TLEALILKELSVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISG 806 Query: 749 --KPDGS---------------IIETPITANFREGLNVLQYFISTHGARKGLADTALKTA 791 PDG + + +F GL ++F T R+GL DTA+KTA Sbjct: 807 SRVPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTA 866 Query: 792 NSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT-AEDVLK 850 +GY+ RRLV +DL D + I GGD +P + VL Sbjct: 867 ETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLD 926 Query: 851 PGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIIN 910 A P L + L E+ + + + C F + + ++ Sbjct: 927 NIKAVFPCPSEPALSKNELILTTESIMKKSE---FLCCQDSFLQEIKKFIKGVSEK---- 979 Query: 911 KGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSS 970 +T G E + + Sbjct: 980 --------------------IKKTRDKYGINDNGTTEP--------RVLYQLDRITPTQV 1011 Query: 971 GKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITE 1030 K + T R+ ++ E G + L E + + P+IT Sbjct: 1012 EKFLETCRDKYMRAQMEPGSAVGALCTQMNITLGVP-----RIKEIINASKAISTPIIT- 1065 Query: 1031 VSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLI 1090 + D D + + E T L + + E D +K+ + + + Sbjct: 1066 --AQLDKDDDADYARLVKGRIEKTLLGE--ISEYIEEVFLPDDCFILVKLSLERIRLLRL 1121 Query: 1091 PGTDMPAQYFLPGKAIVQLEDGVQISSGD-TLARIPQESGGTKDITGGLPRVADLFEARR 1149 +Y + + ++++ G G+ + P+E+ + + V + Sbjct: 1122 EVNAETVRYSICT-SKLRVKPGDVAVHGEAVVCVTPRENSKSS-----MYYVLQFLKEDL 1175 Query: 1150 PKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDV 1209 PK V + R ++ +++ + L +G Sbjct: 1176 PK-----------VVVQGIPEVSRAVIHIDEQSGKEKYKLLVEGDNLRAVMATHGVKGTR 1224 Query: 1210 ISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNA 1269 + +++ + G+ A I+NE+Q G+ I+ +H+ ++ M Sbjct: 1225 TT--SNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMT-------- 1274 Query: 1270 GSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLA--TESFISAASFQE 1327 Y ++LGIT+ LA ES + ASF++ Sbjct: 1275 --------------------------------YKGEVLGITRFGLAKMKESVLMLASFEK 1302 Query: 1328 TTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRR 1372 T L +AA G++D + G+ E +I+G + GTG + R Sbjct: 1303 TADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKADR 1347 >UniRef50_P41556 DNA-directed RNA polymerase subunit A' n=22 Tax=Archaea RepID=RPOA1_METVS Length = 889 Score = 671 bits (1730), Expect = 0.0, Method: Composition-based stats. Identities = 220/888 (24%), Positives = 359/888 (40%), Gaps = 92/888 (10%) Query: 14 TEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCG 73 +E I L SP+ IR+ S ++ +T + + P GL R+ Sbjct: 7 PKEIGDITFGLLSPEQIRTMSVAKIVTADTYDDDGY-PIDGGLMDTRL------------ 53 Query: 74 KYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLL----D 129 + G++C+ C V GHIEL+ HI F K + + + Sbjct: 54 ---GVIDPGLVCKSCSGRVGTCP---GHFGHIELSKSVIHIGFAKDIYKLLKAVCPHCGK 107 Query: 130 MPLRDIERVLYFESYVVIE--GGMTNLERQQILTEEQYLDALEEFGD-EFDAKMGAEAIQ 186 + + +I+R Y E + +E GG +L E G+ ++D K Sbjct: 108 VTVTEIKRDEYLEKMLKLEEDGGDPWTLSDDLLKEAAKSSVCPSCGEVKYDIKYDKPTTY 167 Query: 187 ALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLP 246 L + +++L + +K+ L +PE+M+LTVLPV P Sbjct: 168 HQLDG--------KSQKQLTSSEVREILEKIPNEDCKLLGINSRVARPEYMVLTVLPVPP 219 Query: 247 PDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDAL 306 +RP + L+ G + DL +I N RL+ ++ AP++I+ + +LQ ++ Sbjct: 220 VTVRPSITLESGERSEDDLTHKLVDIIRINQRLEENINGGAPNLIIEDLWDLLQYHINTY 279 Query: 307 LDNGRRG-RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQ 365 DN G + RPL++LA +KGK+GRFR NL GKRV++S R+VI+ P L +++ Sbjct: 280 FDNEAPGIPPARHRSGRPLRTLAQRLKGKEGRFRHNLAGKRVNFSARTVISPDPRLSINE 339 Query: 366 CGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDI-------------- 411 G+P+ +A EL P + + I+ V+ + Sbjct: 340 VGIPELIAKELTVPEKVTPYNIERIRKLIENGSDKHPGVNYVIKKVKTKDGKEEEYKIKI 399 Query: 412 ------------------LDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLV 453 + VL NR P+LHR+ I A + ++ + + + V Sbjct: 400 TDTNKKMWVENIVDGMVVERHLGDGDVVLYNRQPSLHRMSIMAHKVKVLPYRTFRHNLCV 459 Query: 454 CAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYM 513 C YNADFDGD+M VHVP + EA+ EA LM+ +I+SP G PII D V G Y + Sbjct: 460 CPPYNADFDGDEMNVHVPQSEEARAEAETLMLVEKHIISPRYGGPIIGAIHDFVSGAYVL 519 Query: 514 TRDCVNAKGEGMVLTGPKEAERLYRSGL----ASLHARVKVRITEYEKDANGELVAKTSL 569 T +L L ++ + K N + AK Sbjct: 520 TSSNFIKDEALTLLKSSGFGSELGEPDFVENGIEYYSGKSLFSKTLPKGLNLQYKAKVCK 579 Query: 570 KDTTVGR----AILWMIVPKG-LPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQI 624 K R ++I+ G L ++++ +LNT + G + F D Sbjct: 580 KCVQCKREECENDAFVIIRNGRLVQGVIDKNGFGAETGVVLNTIVKDFGSEDARTFLDSA 639 Query: 625 MYTGFAYAARSGASVGIDDMVIP----EKKHEIISEAEAEVAEIQEQFQSGLVT------ 674 G + GIDD IP ++ +++ +AE++V EI E+++ G + Sbjct: 640 TKMSVKSMMLRGFTTGIDDEDIPSEAIQEIQDLLDKAESDVQEIVERYEGGTLDPLPGRG 699 Query: 675 -AGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGS 733 R ++ I A D K L E + + S +I MMA S + S Sbjct: 700 IEESREAYIMQILGKARDDTGKVAEKYLSKENHAALMARTGARGSLLNITMMAASVGQQS 759 Query: 734 AAQIRQLAGMRGLMAKPDGS-----IIETPITANFREGLNVLQYFISTHGARKGLADTAL 788 R G RG G + + +++GL +YF G R+GL D A+ Sbjct: 760 VRGGRVFRGYRGRTLPHFGEGSLDAKSHGFVRSCYKKGLAPTEYFFHAMGGREGLVDQAV 819 Query: 789 KTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLR 836 +TA SGY+ RRLV+ QD+ D ++ G D+ +P + Sbjct: 820 RTAQSGYMQRRLVNALQDIKAEYDGTVRDSRGIIVQFNYGEDLVDPSK 867 >UniRef50_O27125 DNA-directed RNA polymerase subunit A' n=5 Tax=Archaea RepID=RPOA1_METTH Length = 870 Score = 667 bits (1722), Expect = 0.0, Method: Composition-based stats. Identities = 229/920 (24%), Positives = 378/920 (41%), Gaps = 148/920 (16%) Query: 14 TEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCG 73 ++ I L SP+ IR S ++ P+T + + P +GL R+ Sbjct: 5 LKKISQINFGLMSPEDIRKMSVTQIVTPDTYDEDGY-PIENGLMDPRLGVIDPSLR---- 59 Query: 74 KYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLR 133 C CG + + G I LA P H+ F ++ +L R Sbjct: 60 -----------CRTCGAKGGECP---GHFGSINLARPVIHVGFADTIHK----ILRSTCR 101 Query: 134 DIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMD 193 RVL E+ + RQ+IL + ++L E + AEA + + Sbjct: 102 KCGRVLLTETEI-------EEYRQRILDAMEKEESLTPIIKE----IYAEARRDKCPHCE 150 Query: 194 LEQECEQLRE---------ELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPV 244 EQE +L + +L + + ++++ L+ +PEWM+LTVLPV Sbjct: 151 EEQEEIKLDKPVSIVEGDYKLTPSEVRERLERISDDDALILGVNPEVARPEWMVLTVLPV 210 Query: 245 LPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVD 304 P +RP + L+ G + DL ++ N RLK ++ AP +IV + +LQ V Sbjct: 211 PPVTVRPSITLETGERSEDDLTHKLVDILRINQRLKENMEAGAPQLIVEDLWELLQYHVT 270 Query: 305 ALLDNGRRG-RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRL 363 DN G + RPLK+LA +KGK+GRFR NL GKRV++S R+VI+ P + + Sbjct: 271 TYFDNEASGVPPARHRSGRPLKTLAQRLKGKEGRFRSNLSGKRVNFSARTVISPDPNISI 330 Query: 364 HQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVV--------------- 408 ++ G+P+ +A E+ P + + + I+ + V+ Sbjct: 331 NEVGVPEIIAREVTVPVYVTEWNIDRMREYIENGPDVHPGANYVIRPDGRKIRIYNETKE 390 Query: 409 ---------WDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNA 459 + + + VL NR P+LHR+ + A + ++ K +L+ VC YNA Sbjct: 391 VVLENLKPGYIVERHLKDGDIVLFNRQPSLHRMSMMAHQVRVLPYKTFRLNLCVCPPYNA 450 Query: 460 DFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVN 519 DFDGD+M +HV T E++ EA+ LM +ILSP G PII D + G Y +TR Sbjct: 451 DFDGDEMNMHVFQTEESRAEAKTLMRVQEHILSPRFGGPIIGGIHDHISGAYLLTR---- 506 Query: 520 AKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKD--TTVGRA 577 + V + K + L ++GL +R +D G+ + L D V RA Sbjct: 507 ---KSAVFSEEKVFQILKKAGLPLPDSR--------GRDWTGKEIFSMVLPDDLNMVYRA 555 Query: 578 ILW-----------------MIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIF 620 + +I L ++++ K+L+ + G F Sbjct: 556 EVCRKCEECLEMECENDAYVVIENGQLISGVIDEKAYGAFAGKILDHIVKEYGTDAAREF 615 Query: 621 ADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIIS----EAEAEVAEIQEQFQSGLVTAG 676 D A +G + +D IPE+ E I AEA V ++ E +++G + Sbjct: 616 LDSATKLAIAGIMHAGFTTSTNDEEIPEEARERIEAHLRNAEARVDQLIEAYENGELEPL 675 Query: 677 ER-------YNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSG 729 K++ + A D+ + + N +MA +G Sbjct: 676 PGRSLEETLEMKIMQVLGEARDKSGEIAESYFDMDE--------------NHAVIMALTG 721 Query: 730 ARGSAAQIRQLAGMRGLMAKPDGSI--------------------IETPITANFREGLNV 769 ARGS + Q+ G + G I + ++++EGL+ Sbjct: 722 ARGSMLNLTQITACVGQQSVRGGRISRGYDNRTLPHFKKGELGAKSRGFVHSSYKEGLDP 781 Query: 770 LQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGG 829 +++F G R+GL DTA++TA SGY+ RRLV+ QDL V E+ ++ G Sbjct: 782 IEFFFHAMGGREGLVDTAIRTAQSGYMQRRLVNALQDLTVDENGRVVDNRGVIIQNRFGE 841 Query: 830 DVKEPLRDRVLGRVTAEDVL 849 D +P + G++ D L Sbjct: 842 DGVDPAKSD-YGKIVDLDKL 860 >UniRef50_P11512 DNA-directed RNA polymerase subunit A' n=23 Tax=Thermoprotei RepID=RPOA1_SULAC Length = 880 Score = 666 bits (1718), Expect = 0.0, Method: Composition-based stats. Identities = 220/909 (24%), Positives = 363/909 (39%), Gaps = 108/909 (11%) Query: 17 FDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYK 76 +K + SP+ IR S + E + P G+ ++ Sbjct: 6 IRGVKFGVLSPNEIRQMSVTAIITSEVYDED-GTPIEGGVMDPKL--------------- 49 Query: 77 RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL-------PSRIGLLLD 129 + G C CG + GHIEL P HI ++K + R G + Sbjct: 50 GVIEPGQKCPVCGNTLAGCP---GHFGHIELIKPVIHIGYVKHIYDFLRSTCWRCGRI-K 105 Query: 130 MPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALL 189 + +D+ER Y Y I+ + R+ + +Y+ + E + L Sbjct: 106 IKEQDLER--YKRIYNAIKLRWPSAARRLV----EYIKKISIKNLECPHCGEKQFKIKLE 159 Query: 190 KSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDL 249 K + +E +L+ + + +++ L + ++PEWMILTVLPV P + Sbjct: 160 KPYNFNEERNGSIVKLSPSEIRDRLERIPDSDVELLGYDPKSSRPEWMILTVLPVPPITI 219 Query: 250 RPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDN 309 RP + ++ G A DL +I N RLK ++ AP +I+ + +LQ V DN Sbjct: 220 RPSITIESGIRAEDDLTHKLVDIIRLNERLKESIEAGAPQLIIEDLWDLLQYHVATYFDN 279 Query: 310 GRRGRAI-TGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGL 368 G + RPL++LA +KGK+GRFR NL GKRVD+S R+VI+ P L + + G+ Sbjct: 280 EIPGLPPAKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFSARTVISPDPNLSIDEVGI 339 Query: 369 PKKMALELFKPFIYGKLELRGLATTI------KAAKKMVEREEAVVWD------------ 410 P +A L P + + + I V + + D Sbjct: 340 PYTIARMLTVPERVTNINIERIRQYIINGPDKWPGANYVIKPDGRRIDLRYVKDRKELAS 399 Query: 411 -------ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDG 463 + ++ VL NR P+LHR+ + A + ++ G+ +L+ L C YNADFDG Sbjct: 400 SITAGYVVERHLVDGDVVLFNRQPSLHRISMMAHKVRVLPGRTFRLNLLDCPPYNADFDG 459 Query: 464 DQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKG 522 D+M +HVP + EA EAR LM+ NI++P G PII QD + G Y ++ + + Sbjct: 460 DEMNLHVPQSEEAIAEARELMLVHKNIITPRYGGPIIGGGQDYISGAYLLSVKTTLLTVE 519 Query: 523 EGMVLTGPKEAERLYRSGLA----SLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAI 578 E + G + + +V KD N A S I Sbjct: 520 EVATILGVTDFVGELGEPAILAPKPYYTGKQVISLFLPKDFNFHGPANISKGPRACKDEI 579 Query: 579 L----WMIVPKGLPYSIVNQALGKKAIS-----KMLNTCYRILGLKPTVIFADQIMYTGF 629 ++++ GL ++ KKAI ML+ R G + D + Sbjct: 580 CPHDSFIVIKNGL---LLEGVFDKKAIGNQQPESMLHWSIREYGTEYGKWLMDNVFKMFI 636 Query: 630 AYAARSGASVGIDDMVIPEKKHE----IISEAEAEVAEIQEQFQSGLVTAGERYNKVIDI 685 + G ++ ++D+ IP++ I E ++V E +F G + Sbjct: 637 RFLEMRGFTMTLEDITIPDEAQNEITTKIKEGYSQVDEYIRKFNEGQLEPIPGR------ 690 Query: 686 WAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRG 745 + + ++D L + + + FN++Y+MA +GARGS I Q+ + G Sbjct: 691 --TIEESLESYILDTLDKLRKVAGEIATKYLDPFNNVYIMAITGARGSELNITQMTALLG 748 Query: 746 LMAKPDGSI--------------------IETPITANFREGLNVLQYFISTHGARKGLAD 785 + I + +F GL+ + F G R+GL D Sbjct: 749 QQSVRGERIRRGYRERTLSLFKYGDIAPEARGFVKNSFMRGLSPYEMFFHAAGGREGLVD 808 Query: 786 TALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTA 845 TA+KT+ SGY+ RRL++ DL + D + V+ G D P+ V Sbjct: 809 TAVKTSQSGYMQRRLINALSDLRIEYDGTVRSLYGDIVQVVYGDDAVHPMYSAHSKSVNV 868 Query: 846 EDVLKPGTA 854 V++ Sbjct: 869 NRVIERVIG 877 >UniRef50_A9CTJ8 DNA-directed RNA polymerase n=1 Tax=Enterocytozoon bieneusi H348 RepID=A9CTJ8_ENTBH Length = 1541 Score = 665 bits (1716), Expect = 0.0, Method: Composition-based stats. Identities = 287/1449 (19%), Positives = 530/1449 (36%), Gaps = 210/1449 (14%) Query: 15 EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74 ++ I L SP+ I+ S V PETI P+ +GL R+ K++ Sbjct: 7 KKIIGINFGLFSPEEIKKTSVVHVIHPETI--ENGVPKENGLIDLRMGTTEKNF------ 58 Query: 75 YKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRD 134 +C+ C + GHIEL P HI ++ ++I LL+ Sbjct: 59 ---------LCQTCNENMFDC---VGHFGHIELCKPMFHIGYI----TKIKKLLECICFY 102 Query: 135 IERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKS--M 192 ++ F+ T E IL + + D+ E G+ K+G Q ++K M Sbjct: 103 CSKIKDFKLLKEKTKNYTLEEAWNILKTKTFCDSENEKGE----KIGCCNKQPIIKKEGM 158 Query: 193 DLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQS---GNKPEWMILTVLPVLPPDL 249 +L + +E + K + K+I E ++PE M++TVL V PP + Sbjct: 159 NLIAFMKGNDDEGKVILNGEKVCNIFKKIDASELKFIGFNVNSRPENMLITVLLVTPPSV 218 Query: 250 RPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDN 309 RP + L G + DL Y ++ N LK+ AP+ I+R+ +++LQ + L++N Sbjct: 219 RPSI-LTDGLRSEDDLTHKYADIVKSNACLKKYEQDGAPNHIIRDYEQLLQFHLSTLINN 277 Query: 310 GRRGRAI-TGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGL 368 G+ I + RP+KS++ +KGK+GR R NL+GKRVD+S RSVIT P + L + G+ Sbjct: 278 EISGQPIAMQKSGRPIKSISARLKGKEGRIRGNLMGKRVDFSARSVITPDPAIELDEVGV 337 Query: 369 PKKMALELFKPFIYGKLELRGLATTI------KAAKKMVEREEAVVWD------------ 410 P +A+ P + + L + V R + D Sbjct: 338 PLHIAMIQTFPEKVNSININTLQKMVNNGPTEYPGANYVIRNDGQRIDLKYSRFDLKLEK 397 Query: 411 ---ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMA 467 + ++ VL NR P+LH++ + ++ K +L+ V + YNADFDGD+M Sbjct: 398 GFIVERHMLDNDIVLFNRQPSLHKMSMMGHRAKIMNNKTFRLNLSVTSPYNADFDGDEMN 457 Query: 468 VHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMV 526 +H+P + + E L + NI+SP + +P+I QD ++G+ T ++ K E M Sbjct: 458 LHMPQSYNTKSELINLASVSRNIISPQSNKPVIGIVQDTLVGVRLFTLKNTFFNKRETMN 517 Query: 527 LTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKG 586 L + + + + I +G + + +I Sbjct: 518 LLFTLDTLEEKVMEIINNPILI---IHNKISLWSGLQIFSAVFPNKFNFNYKGVVIKNSN 574 Query: 587 LPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAAR-SGASVGIDDMV 645 L +++ +++ G F + + + + ++GI D + Sbjct: 575 LITGTLSKITCGATHGGLIHVICNDYGCLEATKFINNVQRLINHFMFHINSFTIGIGDTI 634 Query: 646 IPEKKHE----IISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNL 701 I + E I+ A V E+ + G + + N ++KA Sbjct: 635 INPEIIEDCKSNIANAIHNVDELINMAKLGKLEKLPGLTIENTFESKVNLILNKAR---- 690 Query: 702 QTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAK-----PDGS--- 753 + + N++ M SG++GS I Q+ G P G Sbjct: 691 ---------DYKGEITLCNNMNAMILSGSKGSKINIAQMTSCVGQQNVEGKRIPFGFEKR 741 Query: 754 ------------IIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLV 801 I I+ ++ G+ +++ G R+GL DTA+KTA +GY+ RRLV Sbjct: 742 TLPHFQKFDYSAISRGFISNSYLTGMTPQEFYFHAMGGREGLIDTAIKTAETGYIQRRLV 801 Query: 802 DVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRN 861 +D VV D + + G D G++ + +L T D Sbjct: 802 KAMEDAVVRSDSSVRNGFGKIYQFAYGEDGFN-------GKILEKIILNKPTKDEFYIDI 854 Query: 862 TLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGH-IINKGEAIGVIAA 920 + + + +++ + D + + Y L + + +++ G + + Sbjct: 855 NDITNTLRNNKSFIPREVIEL---LKTDVEIQKLNNEYYNYLEQNYSLLDNGMYVTPVNI 911 Query: 921 QSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNT 980 Q I + + + ++K + V +N L +++ Sbjct: 912 QRI---LLNKKLNNRIKCNLSPYIIYDEIEKLKTNNLLWNYYVSYSLNPKKLLQTQTKSN 968 Query: 981 ELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPV----------ITE 1030 +++++ + +V ++ + V GE +T + + Sbjct: 969 FMEIVNTIKIKLKEAQVEPNEMVGTLAAQSV--GEPATQMTLNTFHLAGVASTITMGVPR 1026 Query: 1031 VSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGND-VL 1089 ++ + T I + Q + S + + E ++ L + D D +L Sbjct: 1027 LNEIINTTKNIKTPLMIVQLQKNDLQSCKNLRNKIEYSSLKDLYESFLLLYDPIITDTIL 1086 Query: 1090 IPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARR 1149 ++ YF I + I E I GL + + E + Sbjct: 1087 DEDKELVENYFEMPDEIDLDKCSSF--------CIRFELNKYHVIGRGL-DLEYIIEKIK 1137 Query: 1150 PKEPAIL-AEISGIVSFGKETKGKRRLVITPVDGSDP----YEEMIPKWRQLNVFEGERV 1204 ++L I I S + K R+ + D Y E++ K +++ E + Sbjct: 1138 LNIKSMLDIGIHIIYSLPTDEKLILRIRLILNDKIKENLKFYNELVDKLLNIHIQGLEGI 1197 Query: 1205 ERGDVI----------SDG------------------PEAPHDILRLRGVHAVTRYIVNE 1236 ++ +I +DG +I GV A+ I+ E Sbjct: 1198 KKAYLIHNKDDTWTLQTDGINYQTILSFPNVDGSHTTSNDLFEIYETLGVEALRETIMTE 1257 Query: 1237 VQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANG 1296 + V G +N +H+ ++ M Sbjct: 1258 LTMVIENNGSYVNSRHLSLLSDVMT----------------------------------- 1282 Query: 1297 KVGATYSRDLLGITKASLATE---SFISAASFQETTRVLTEAAVAGKRDELRGLKENVIV 1353 GIT+ + E S + ASF+ET +L EAA + + G+ EN+++ Sbjct: 1283 ---VCGYPS--GITRHGVNREIKASALKRASFEETVDILLEAAATAEENPAHGITENIMM 1337 Query: 1354 GRLIPAGTG 1362 G+L P GTG Sbjct: 1338 GQLAPLGTG 1346 >UniRef50_Q8SRM3 DNA-directed RNA polymerase n=2 Tax=Apansporoblastina RepID=Q8SRM3_ENCCU Length = 1349 Score = 665 bits (1716), Expect = 0.0, Method: Composition-based stats. Identities = 295/1485 (19%), Positives = 517/1485 (34%), Gaps = 329/1485 (22%) Query: 16 EFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKY 75 I +L SP I S E+ + + T P +G R+ Sbjct: 46 RIRRISFSLLSPQEISDLSVHEISSKDLYDISTRAPLPNGPLDLRL-------------- 91 Query: 76 KRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDI 135 + ++ C CG + G + L P ++ +K+ S + L + Sbjct: 92 -GVGNKKDKCATCGEGLATCI---GHFGEVRLVLPVFNVGLIKNTISTLNCL----CKSC 143 Query: 136 ERVLYFESYVVIE---------GGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAE--A 184 +L E + G T L ++I+ E + ++ F F + Sbjct: 144 GSILLNEKKKIYFKKKLRESSGGNDTKLILRRIVAECKKVNVC--FVCSFRNGQIKKTFG 201 Query: 185 IQALLKSMDLEQECEQLR------------EELNETNSETKRKKLTKRIKLLEAFVQSGN 232 + + + DLE+ + EE+N + + + L F++S Sbjct: 202 FRIVHEVEDLEKRKKDRGSKGSDGVHSSCCEEINPLVALNVFNMMKEDDYELLGFLES-- 259 Query: 233 KPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIV 292 P +I+ + V P +RP V +D D+ +++ N L+ ++ P ++ Sbjct: 260 -PSRLIIQNVIVPPSCIRPSVSMDDEGTNEDDITIKISEIVHTNKVLREGIEKGNPLNLI 318 Query: 293 RNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGR 352 + LQ L+++ I G P++ + +KGK GRFR NL GKRVD+SGR Sbjct: 319 NEDWDHLQLQCALLINSELPQIGIPGQ---PVRGIVQRLKGKNGRFRCNLSGKRVDFSGR 375 Query: 353 SVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWD-- 410 +VI+ P L + + G+P++MA L +L R L + + VV + Sbjct: 376 TVISPDPNLSIEEVGIPERMAKILTISERVTRLNRRKLQALVLNGPENYPGANYVVGEKF 435 Query: 411 ------------------ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPL 452 + ++ VL NR P+LHR+ I + + + K ++ + Sbjct: 436 KRFLMYGKRDIELKYGEVVERHLMDGDMVLFNRQPSLHRMSIMSHKVRVHRNKTLRFNEC 495 Query: 453 VCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYY 512 VC YNADFDGD+M VHVP T +A+ EA LM +NNI++P +GEPI+ +QD + GLY Sbjct: 496 VCTPYNADFDGDEMNVHVPQTEKARAEASVLMSVSNNIVTPRHGEPIVAATQDFITGLYL 555 Query: 513 MT-RDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKD 571 +T +D + L + VK I + + G+ + + +KD Sbjct: 556 ITGKDTFFDRERFGQLVSY----------FSEARVGVKPAIRKPVELFTGKQLIEVLIKD 605 Query: 572 TTVGRAILW----------------------------MIVPKGLPYSIVNQALGKKAISK 603 + I+ + +++++ + Sbjct: 606 SFTASIERNAVTGNMAVSLVGKNRSFKTHDDPNDGSVAILDNSYYFGRLDKSIVGGENKR 665 Query: 604 --MLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDM----VIPEKKHEIISEA 657 ++ ++ V + I Y +G S+G+DD+ ++ +KK ++ Sbjct: 666 DSLIYAIMKV-SSMAAVRAMNSITKLCSRYLGETGFSIGLDDVQPGPILRQKKEMVVRRG 724 Query: 658 EAEVAEIQEQFQSGLVTAGERYNKVI-DIWAAANDRVSKAMMDNLQTETVINRDGQEEKQ 716 AE ++ E I I + + L Sbjct: 725 YAECESKILEYSKKPEANEEMLEMEISSILNRIREECGSICIKELGIR------------ 772 Query: 717 VSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSI--------------------IE 756 NS +M G++GS + Q+ G I + Sbjct: 773 ---NSPNIMQACGSKGSKINVSQMVACVGQQIVSGTRIPNGMDERCLPHFKRGSRTPESK 829 Query: 757 TPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGT 816 + +F +GL ++F R+GL DTA+KTA +GY+ RRL+ +DL + D Sbjct: 830 GFVLNSFFDGLTSPEFFFHAVSGREGLVDTAVKTAETGYMQRRLMKALEDLSIQYDGSVR 889 Query: 817 HEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADIL--VPRNTLLHEQWCD---- 870 + + + G D +P + E V + L + + L+ W D Sbjct: 890 NSNMEVVQFAYGEDQIDPAMSEGDESINLEQVFLRAKSSFLHSLGPSPDLYSSWLDEHGT 949 Query: 871 -----LLEENSVDAVKV--RSVVSCDTDFGVCAH----CYGRDLAR-------------- 905 L + R V F H C+G R Sbjct: 950 IDILRRLTPKGYPFEHIANRRFVGSLLRFMESKHEDKFCFGGTFYRYFLSKDFIETFFSM 1009 Query: 906 ------GHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIK 959 I+ G +G IA QSIGEPGTQ+T++TFH G AS + Sbjct: 1010 VSQKMMNLIVEPGTTVGAIAGQSIGEPGTQMTLKTFHFAGVASMNIT-----------LG 1058 Query: 960 LSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVAN 1019 + +K ++N+ + N EL Sbjct: 1059 VPRLKEIINAVCNISTPIINAELD------------------------------------ 1082 Query: 1020 WDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALK 1079 DPH + + G + D ++ LT + S + R R L Sbjct: 1083 -DPHDLFRTEVIKGRL------DRISLKDVCSSLTEVISKDEIFLDIRVDLESLSRLKLN 1135 Query: 1080 IVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLP 1139 + D + L+ D ++ + D Sbjct: 1136 L-DIHKIEKLLNNHDQVR----------------VVNEN----TLRVSIKKITD------ 1168 Query: 1140 RVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVF 1199 F +R K+ + +I G R++I G Y +I LNV Sbjct: 1169 --QSYFNLQRIKKKLLNTKICG-------APQVNRVIINSSRG--LYSLVIEGRGLLNVI 1217 Query: 1200 EGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQ 1259 + V+ I+ + ++ + G+ A I++E++ G+KI+ +HI ++ Sbjct: 1218 NIDGVKA---INTTSNSITEVEEVLGIEAARAQIIHEIEYTISNHGIKIDPRHIMLLADT 1274 Query: 1260 MLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLA--TE 1317 M Y ++ GIT+ ++ + Sbjct: 1275 MT----------------------------------------YRGEVFGITRFGISKMSR 1294 Query: 1318 SFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362 S + ASF++T+ L EAAV K DE+ G+ E++I+G I GTG Sbjct: 1295 STLMLASFEQTSDYLFEAAVQSKSDEICGVSESIILGIPICIGTG 1339 >UniRef50_C5YGY9 DNA-directed RNA polymerase n=716 Tax=Eukaryota RepID=C5YGY9_SORBI Length = 1857 Score = 663 bits (1711), Expect = 0.0, Method: Composition-based stats. Identities = 212/947 (22%), Positives = 368/947 (38%), Gaps = 178/947 (18%) Query: 6 KFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPV 65 +F + + + + ++ + SPD IR S +++ ET+ KP+ GL R+ Sbjct: 4 RFPYSPAEVAKVELVQFGILSPDEIRQMSVVQIEHAETM--ERGKPKPGGLSDPRLGTI- 60 Query: 66 KDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIG 125 R + CE C + + GH+ELA P HI F+K++ S + Sbjct: 61 --------------DRKIKCETCMAGMAECP---GHFGHLELAKPMFHIGFIKTVLSIMR 103 Query: 126 LLL--DMPLRDIERVLYFESYVVIEGGMTNLER-------QQILTEEQYLDALEEFGDEF 176 + + E F+ + I L+R +++ LD E+ DE Sbjct: 104 CVCFNCSKILADEDETKFKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQEQDTDEP 163 Query: 177 DAK---MGAEAIQALLKSMDLEQECEQLREE----------------LNETNSETKRKKL 217 K GA+ + M + E + +++ L+ K++ Sbjct: 164 VKKRGGCGAQQPNITVDGMKMVAEFKAPKKKSDDQDQLPEPVERKQILSAERVLNVLKRI 223 Query: 218 TKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNN 277 + LL +P+WMIL VLPV PP +RP V +D + DL +I N Sbjct: 224 SDEDCLLLGLNPKYARPDWMILQVLPVPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNE 283 Query: 278 RLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRA-ITGSNKRPLKSLADMIKGKQG 336 L+R AP I+ ++LQ + DN G+ T + RP+KS+ +K K+G Sbjct: 284 NLRRQERNGAPAHIITEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEG 343 Query: 337 RFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI-- 394 R R NL+GKRVD+S R+VIT P + + + G+P +AL L P + L + Sbjct: 344 RIRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEY 403 Query: 395 -------KAAKKMVEREEAVVWD-----------------ILDEVIREHPVLLNRAPTLH 430 K K + RE+ D + + VL NR P+LH Sbjct: 404 GPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLH 463 Query: 431 RLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNI 490 ++ I ++ +L+ V + YNADFDGD+M +HVP + E + E LMM I Sbjct: 464 KMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCI 523 Query: 491 LSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKV 550 +SP + P++ QD +LG +T+ + + V + Sbjct: 524 VSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKD------------------------VFM 559 Query: 551 RITEYEKDANGELVAKTSLKDT--TVGRAILWMIVPKGLP-------------------- 588 I + +D +G++ A LK G+ + +I+PK + Sbjct: 560 NILMWWQDFDGKIPAPAILKPRPIWTGKQVFNLIIPKQINLIRFSAWHSEEEKGFITPGD 619 Query: 589 -------YSIVNQALGKKAI----SKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGA 637 +++ L KK++ +++ + +G F + + ++G Sbjct: 620 TMVRIEKGELLSGTLCKKSLGTGTGSLIHIIWEEVGPDAARKFLGHTQWLVNYWLLQNGF 679 Query: 638 SVGIDDMVIPEKKHEIIS----EAEAEVAEIQEQFQSGLVTAGE-------RYNKVIDIW 686 S+GI D + + I+ +A+ EV E+ ++ + A N+V + Sbjct: 680 SIGIGDTIADASTMQTINDTICKAKDEVKELIKKAHEKQLEAEPGRTMMESFENRVNQVL 739 Query: 687 AAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGL 746 A D + +L N++ M +G++GS I Q+ G Sbjct: 740 NKARDDAGSSAQKSLSES---------------NNLKAMVTAGSKGSFINISQMTACVGQ 784 Query: 747 M--------------------AKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADT 786 G + ++ GL ++F G R+GL DT Sbjct: 785 QNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDT 844 Query: 787 ALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKE 833 A+KT+ +GY+ RRLV +D++V D + + + G D + Sbjct: 845 AVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 891 Score = 149 bits (376), Expect = 8e-34, Method: Composition-based stats. Identities = 99/504 (19%), Positives = 182/504 (36%), Gaps = 97/504 (19%) Query: 886 VSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAA 945 ++ + V R L ++ GE IG +AAQSIGEP TQ+T+ TFH G +++ Sbjct: 1055 LTKEAFEWVIGEIESRFL--QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNV 1112 Query: 946 AESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAK 1005 + + ++ ++N + K+ S + LK E + KE K A+ Sbjct: 1113 T-----------LGVPRLREIINVAKKIKTPSLSVYLK--PEVNQKKELAKNVQCALEYT 1159 Query: 1006 GDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDM----IDGQTITRQTDELTGLSSLVV 1061 E + DP + + + +M ID I+ + ++V Sbjct: 1160 TLRSVTHATEIWYDPDPLGTIIEEDAEFVQSYYEMPDEDIDPDKISPWLLRIELNREMMV 1219 Query: 1062 LDSAERTAGGKDLRPALK-----IVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQIS 1116 + I + D LI + P I + + Sbjct: 1220 DKKLSMADIADKINREFDDDLSCIFNDDNADKLILRIRITND-EAPKGEI-----QDESA 1273 Query: 1117 SGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLV 1176 D + + + T+ G+P + +F KE G V+ + +G + Sbjct: 1274 EDDVFLKKIEGNMLTEMALRGIPDINKVF----IKE--------GKVNTFYQDEGFK--- 1318 Query: 1177 ITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNE 1236 ++ + L V E V+ S+ +++ + G+ AV R +++E Sbjct: 1319 -----AANEWMLDTEGVNLLAVMCHEDVDATRTTSNHLI---EVIEVLGIEAVRRSLLDE 1370 Query: 1237 VQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANG 1296 ++ V G +N +H+ ++ M Sbjct: 1371 LRVVISFDGSYVNYRHLAILCDTMT----------------------------------- 1395 Query: 1297 KVGATYSRDLLGITKASLATE--SFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVG 1354 Y L+ IT+ + + SF+ET +L +AAV + D LRG+ EN+++G Sbjct: 1396 -----YRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDHLRGVTENIMLG 1450 Query: 1355 RLIPAGTG--YAYHQDRMRRRAAG 1376 +L P GTG Y D+M ++A Sbjct: 1451 QLAPIGTGGCALYLNDQMLQQAIE 1474 >UniRef50_P24928 DNA-directed RNA polymerase II subunit RPB1 n=93 Tax=Eukaryota RepID=RPB1_HUMAN Length = 1970 Score = 657 bits (1696), Expect = 0.0, Method: Composition-based stats. Identities = 225/1007 (22%), Positives = 371/1007 (36%), Gaps = 183/1007 (18%) Query: 10 AQTKTEEFDAIKIALASPDMIRSWSFGE--VKKPETINYRTFKPERDGLFCARIFGPVKD 67 + ++ + SPD ++ S E +K PET +P+ GL R Sbjct: 11 SACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETT--EGGRPKLGGLMDPR------- 61 Query: 68 YECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFL-------KSL 120 + + R C+ C +T+ GHIELA P H+ FL + + Sbjct: 62 --------QGVIERTGRCQTCAGNMTECP---GHFGHIELAKPVFHVGFLVKTMKVLRCV 110 Query: 121 PSRIGLLL----------------DMPLRDIERVL-YFESYVVIEGGMTNLERQQILTEE 163 LL P + + V + + EGG + + E Sbjct: 111 CFFCSKLLVDSNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPE 170 Query: 164 QYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETN---SETKRKKLTKR 220 D +E G G + ++L E + + E+ E S + ++ KR Sbjct: 171 GDEDLTKEKGH---GGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKR 227 Query: 221 IKLLEAFV----QSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRN 276 I E FV +PEWMI+TVLPV P +RP V + G DL ++ N Sbjct: 228 ISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKIN 287 Query: 277 NRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRA-ITGSNKRPLKSLADMIKGKQ 335 N+L+R A ++ + ++LQ V ++DN G + RPLKSL +KGK+ Sbjct: 288 NQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKE 347 Query: 336 GRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIK 395 GR R NL+GKRVD+S R+VIT P L + Q G+P+ +A + I + L ++ Sbjct: 348 GRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVR 407 Query: 396 AAK------KMVEREEAVVWD-----------------ILDEVIREHPVLLNRAPTLHRL 432 K + R+ D + + V+ NR PTLH++ Sbjct: 408 RGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKM 467 Query: 433 GIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILS 492 + ++ +L+ V YNADFDGD+M +H+P +LE + E + L M I++ Sbjct: 468 SMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVT 527 Query: 493 PANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVL------------------TGPKEA 533 P + P++ QD + + T RD +GE M L P Sbjct: 528 PQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWT 587 Query: 534 ERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVN 593 + S + H + + D + S DT V ++ L I+ Sbjct: 588 GKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKV------VVENGELIMGILC 641 Query: 594 QALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEK---- 649 + + +++ Y +G T +F I + G ++GI D + K Sbjct: 642 KKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQD 701 Query: 650 KHEIISEAEAEVAEIQEQFQSGLVTAGE-------RYNKVIDIWAAANDRVSKAMMDNLQ 702 I +A+ +V E+ E+ + + N+V I A D+ + +L Sbjct: 702 IQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLS 761 Query: 703 TETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM--------------- 747 +N+ M SGA+GS I Q+ + G Sbjct: 762 E---------------YNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRT 806 Query: 748 -----AKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVD 802 G + ++ GL ++F G R+GL DTA+KTA +GY+ RRL+ Sbjct: 807 LPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIK 866 Query: 803 VAQDLVVTEDDCGTHEGIMMTPVIEGGDVK--------------------------EPLR 836 + ++V D + + + G D + Sbjct: 867 SMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTN 926 Query: 837 DRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVR 883 +R L R ED++K V N + + E D +R Sbjct: 927 ERALRRTLQEDLVKD------VLSNAHIQNELEREFERMREDREVLR 967 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 93/495 (18%), Positives = 175/495 (35%), Gaps = 96/495 (19%) Query: 902 DLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLS 961 I + GE +G +AAQS+GEP TQ+T+ TFH G +++ + + Sbjct: 1074 SKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVT-----------LGVP 1122 Query: 962 NVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWD 1021 +K ++N S K S + L+ + R E K L +V + +D Sbjct: 1123 RLKELINISKKPKTPSLT--VFLLGQSARDAERAK-DILCRLEHTTLRKVTANTAI-YYD 1178 Query: 1022 PHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPAL--- 1078 P+ V D D S +L D + + Sbjct: 1179 PNP-------QSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQI 1231 Query: 1079 --KIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIP-------QESG 1129 KI G+D+ D A+ + I+ ++ + + ++ ES Sbjct: 1232 AEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESN 1291 Query: 1130 GTKDIT-GGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEE 1188 D+T G+ +++ ++ +T K++++IT +E Sbjct: 1292 MLTDMTLQGIEQISKVY------------------MHLPQTDNKKKIIITEDGEFKALQE 1333 Query: 1189 MIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKI 1248 I + +++ + D + +I + G+ AV + + E+ V G + Sbjct: 1334 WILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYV 1393 Query: 1249 NDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLG 1308 N +H+ ++ M L+ Sbjct: 1394 NYRHLALLCDTMT----------------------------------------CRGHLMA 1413 Query: 1309 ITKASLATE--SFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG-YAY 1365 IT+ + + + SF+ET VL EAA G+ D ++G+ EN+++G+L PAGTG + Sbjct: 1414 ITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDL 1473 Query: 1366 HQDRMRRRAAGEAPA 1380 D + + E P Sbjct: 1474 LLDAEKCKYGMEIPT 1488 >UniRef50_P04052 DNA-directed RNA polymerase II subunit RPB1 n=1391 Tax=cellular organisms RepID=RPB1_DROME Length = 1887 Score = 657 bits (1695), Expect = 0.0, Method: Composition-based stats. Identities = 203/929 (21%), Positives = 363/929 (39%), Gaps = 153/929 (16%) Query: 10 AQTKTEEFDAIKIALASPDMIRSWSFGE--VKKPETINYRTFKPERDGLFCARIFGPVKD 67 ++ + ++ + SPD IR S E V+ ET+ +P+ GL R Sbjct: 7 SKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETM--EGGRPKLGGLMDPR------- 57 Query: 68 YECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWF-------LKSL 120 + + R C+ C +T+ GHI+LA P HI F L+ + Sbjct: 58 --------QGVIDRTSRCQTCAGNMTECP---GHFGHIDLAKPVFHIGFITKTIKILRCV 106 Query: 121 PSRIGLLL----DMPLRDI---------ERVLYFESYVVIEGGMTNLERQQILTEEQYLD 167 +L + +++I +R+ Y + E + E Q D Sbjct: 107 CFYCSKMLVSPHNPKIKEIVMKSRGQPRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPD 166 Query: 168 ALEEFGDEFDAKMGAEAIQALLKS--MDLEQECEQLREELNETN---SETKRKKLTKRIK 222 ++ G G Q ++ +DL E + E+ E S + ++ K I Sbjct: 167 PNKKPGHG-----GCGHYQPSIRRTGLDLTAEWKHQNEDSQEKKIVVSAERVWEILKHIT 221 Query: 223 LLEAFV----QSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNR 278 E F+ +P+WMI+TVLPV P +RP V + G DL +I NN Sbjct: 222 DEECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNE 281 Query: 279 LKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRA-ITGSNKRPLKSLADMIKGKQGR 337 L++ A +++ +MLQ V L+DN G + +PLK++ +KGK+GR Sbjct: 282 LRKNEASGAAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGR 341 Query: 338 FRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAA 397 R NL+GKRVD+S R+VIT P LR+ Q G+P+ +A L P + + + ++ Sbjct: 342 IRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRG 401 Query: 398 K------KMVEREEAVVWD-----------------ILDEVIREHPVLLNRAPTLHRLGI 434 K + R+ D + + + V+ NR PTLH++ + Sbjct: 402 NSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSM 461 Query: 435 QAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPA 494 ++ +++ + YNADFDGD+M +HVP ++E + E + ++ I++P Sbjct: 462 MGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQ 521 Query: 495 NGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMV-----------------LTGPKE---AE 534 +P++ QD + + MT+ V E ++ + P+ + Sbjct: 522 ANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNLLMFLPTWDAKMPQPCILKPRPLWTGK 581 Query: 535 RLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQ 594 +++ + ++ T +++ G S DT V M+ L I+ + Sbjct: 582 QIFSLIIPGNVNMIRTHSTHPDEEDEGPY-KWISPGDTKV------MVEHGELIMGILCK 634 Query: 595 ALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPE----KK 650 + +L+ C+ LG F I + G S+GI D + + Sbjct: 635 KSLGTSAGSLLHICFLELGHDIAGRFYGNIQTVINNWLLFEGHSIGIGDTIADPQTYNEI 694 Query: 651 HEIISEAEAEVAEIQEQFQSGLVTAGE-------RYNKVIDIWAAANDRVSKAMMDNLQT 703 + I +A+ +V + ++ + + NKV I A D+ + +L Sbjct: 695 QQAIKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARDKTGGSAKKSLTE 754 Query: 704 ETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM---------------- 747 +N++ M SG++GS I Q+ G Sbjct: 755 ---------------YNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTL 799 Query: 748 ----AKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDV 803 G + ++ GL +++ G R+GL DTA+KTA +GY+ RRL+ Sbjct: 800 PHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKA 859 Query: 804 AQDLVVTEDDCGTHEGIMMTPVIEGGDVK 832 + ++V D + + + G D Sbjct: 860 MESVMVNYDGTVRNSVGQLIQLRYGEDGL 888 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 92/487 (18%), Positives = 167/487 (34%), Gaps = 86/487 (17%) Query: 904 ARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNV 963 + N GE +G +AAQS+GEP TQ+T+ TFH G +S+ + + + Sbjct: 1068 FQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVT-----------LGVPRL 1116 Query: 964 KSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPH 1023 K ++N S K S L K + L +V + Sbjct: 1117 KEIINISKKPKAPSLTVFLTGGAARDAEKAKNVLC---RLEHTTLRKVTANTAIYYDPDP 1173 Query: 1024 TMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDA 1083 VI+E FV + TR L ++ + + + + Sbjct: 1174 QRTVISEDQEFVNVYYEMPDFDPTR-ISPWLLRIELDRKRMTDKKLTMEQIAEKINVGF- 1231 Query: 1084 QGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIP-------QESGGTKDIT- 1135 G D+ D A + I+ E+ + + ++ E+ D+T Sbjct: 1232 -GEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTL 1290 Query: 1136 GGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQ 1195 G+ + ++ +T K+R+VIT E + + Sbjct: 1291 QGIEAIGKVY------------------MHLPQTDSKKRIVITETGEFKAIGEWLLETDG 1332 Query: 1196 LNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEV 1255 ++ + D I +I ++ G+ AV + + E+ V + G+ +N +H+ + Sbjct: 1333 TSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLAL 1392 Query: 1256 IVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLA 1315 + M K L+ IT+ + Sbjct: 1393 LCDVMTAKGH----------------------------------------LMAITRHGIN 1412 Query: 1316 TE--SFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG-YAYHQDRMRR 1372 + + SF+ET VL +AA + D +RG+ EN+I+G+L GTG + D + Sbjct: 1413 RQDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKC 1472 Query: 1373 RAAGEAP 1379 R E P Sbjct: 1473 RFGIEIP 1479 >UniRef50_O96452 DNA-directed RNA polymerase n=3 Tax=Eukaryota RepID=O96452_ANTLO Length = 1553 Score = 657 bits (1694), Expect = 0.0, Method: Composition-based stats. Identities = 219/877 (24%), Positives = 360/877 (41%), Gaps = 108/877 (12%) Query: 15 EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74 + AI+ L SP+ IR+ S ++ PET+ P+ GL R+ +DY Sbjct: 9 KRVKAIQFGLFSPEEIRASSVALIRYPETL--ENGVPKESGLIDLRMGTTERDY------ 60 Query: 75 YKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRD 134 +C C + V GHIEL P H+ F+ SRI +L Sbjct: 61 ---------LCATCNQD---NYVCAGHFGHIELVKPMFHVGFI----SRIKKVL------ 98 Query: 135 IERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDL 194 E V ++ S V I T + ++ + L+ + Q ++K L Sbjct: 99 -ECVCFYCSKVRINKNKTTITKES----KHKLNFIWGICKNKMVCEDCNNRQPVIKKEGL 153 Query: 195 EQECEQLREE-------LNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPP 247 EE LN KK+ F ++PE+MIL+VL V PP Sbjct: 154 SLFAYMKGEENNEGKVMLNGERVYNIFKKINNEDLEFLGFNIKYSRPEYMILSVLLVAPP 213 Query: 248 DLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALL 307 +RP + ++G DL Y +I N LK+ + AP I+R+ ++++Q V L+ Sbjct: 214 AVRPSIVMEGTLRGEDDLTYKYSDIIKSNQNLKKYEEEGAPAHIIRDYEQLVQFHVATLI 273 Query: 308 DNGRRGRA-ITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQC 366 DN G+ N RPLK+++ +KGK+GR R NL+GKRVD+S RSVIT P + L + Sbjct: 274 DNEISGQPQALQKNGRPLKAISARLKGKEGRLRGNLMGKRVDFSARSVITADPNISLEEL 333 Query: 367 GLPKKMALELFKPFIYGKLELRGLATTI------KAAKKMVEREEAVVWD---------- 410 G+P K+A+ P L L + + R + D Sbjct: 334 GVPMKVAMIHTFPERVTSFNLNKLRKLVSNGPNKYPGANYLIRRDGQRIDLNFSRGDVIL 393 Query: 411 -----ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQ 465 + ++ VL NR P+LH++ + A + +++G +L+ A YNADFDGD+ Sbjct: 394 EEGYVVERHMLNGDLVLFNRQPSLHKMSMMAHKVKVMDGLTFRLNLSATAPYNADFDGDE 453 Query: 466 MAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGM 525 M +H+P + ++ E LM+ + +I+SP + +P++ QD +LG+ +T V K E Sbjct: 454 MNLHMPQSYNSKAELSELMLVSKHIISPQSNKPVMGIIQDTLLGVCRLTSKGVFIKRE-- 511 Query: 526 VLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPK 585 + +Y S L + A +K I + G+ + +L R +I+ Sbjct: 512 -----EFCNLVYASNLVA-RANIKPAIARPKILYTGKQLFSLTLPKLNFFR-DKVVIMDG 564 Query: 586 GLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAAR-SGASVGIDDM 644 L ++ + A +++ G + F D + Y S SVGI D Sbjct: 565 VLLNGVICKKSVGTAQGSLIHIIANDYGHEEITRFIDSLQKLISTYLTLISTFSVGIGDT 624 Query: 645 VIPEKKHEIIS----EAEAEVAEIQ-EQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMD 699 + + IS +A+AEV ++ + + G + N + + N ++KA Sbjct: 625 ISSPETMAHISRAIGDAKAEVKQLIYDSRRRGSLEKLPGMNLQETLESKINLALNKA--- 681 Query: 700 NLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM------------ 747 I+ E N + M +G++GS I Q+ G Sbjct: 682 -----RDISGTRAVESLNHLNGLKQMLKAGSKGSYINISQITSCVGQQNIESKRIPFGFR 736 Query: 748 --------AKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRR 799 G +T ++ GLN ++F G R+GL DTA KTA +GY+ RR Sbjct: 737 QRTLPHFVKNDYGPESRGFVTNSYLSGLNPEEFFFHAMGGREGLIDTACKTAETGYIQRR 796 Query: 800 LVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLR 836 +V +D + D + + G D + Sbjct: 797 IVKAMEDARIEYDGSVRGSS-TVYQFMYGEDNFDSTY 832 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 82/467 (17%), Positives = 157/467 (33%), Gaps = 116/467 (24%) Query: 908 IINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVV 967 II+ E +G +AAQSIGEP TQ+T+ TFH G A +A + + +K ++ Sbjct: 1020 IISTNEMVGTLAAQSIGEPATQMTLNTFHYAGVA-QAITQG-----------VPRLKEII 1067 Query: 968 NSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPV 1027 N + + S + G + + VA+ + Sbjct: 1068 NVAKNIRTPSH-----------------------KIYLKPGSTIEQAKKVASEIEYINIE 1104 Query: 1028 ITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGND 1087 + + + +D I D + + L P L + D Sbjct: 1105 MVCSEIKIIYDPKVDTTIINEDRD-----FVEAYFEFPDEYVSLDTLNPWL-LRLVVARD 1158 Query: 1088 VLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITG-----GLPRVA 1142 LI + + I ++ + +++ G+ Sbjct: 1159 RLISNN---LDFEFIAQKIKKVFHQD--------IFLLHSDANAEELVIRIRVLGMSANE 1207 Query: 1143 DLFEARRPKEPAILAEISGIVSFGKETK-GKRRLVITPVDGSDPYEEMIPKWRQLNVFEG 1201 + + RR + + GI + + +R I DG + + ++ + N Sbjct: 1208 EFY--RRLLNTILGIHLKGITNIRRIYLLREREEWILQTDGKNLKQLLLVEDILAN---- 1261 Query: 1202 ERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQML 1261 +V D++ ++ + G+ AV I+ E+++V +G +N +H+ ++ M Sbjct: 1262 -KVYCNDLL--------EVYEVLGIEAVRECILRELRNVIEAEGSYVNFRHLYLLCDVMT 1312 Query: 1262 RKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATE--SF 1319 K L GIT+ Sbjct: 1313 LK-----------------------------------------GLRGITRHGANRAATGA 1331 Query: 1320 ISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYH 1366 + SF+ET +L EA+ +R+ RG+ EN+++G+L P GTG Sbjct: 1332 LKRCSFEETVEILLEASCFAERNYCRGVTENIMLGQLAPIGTGNTIC 1378 >UniRef50_UPI0001C41F18 DNA-directed RNA polymerase subunit A'' RpoA1 n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41F18 Length = 926 Score = 656 bits (1692), Expect = 0.0, Method: Composition-based stats. Identities = 224/939 (23%), Positives = 379/939 (40%), Gaps = 138/939 (14%) Query: 25 ASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVI 84 SPD IR S + +P+T + + P +GL +R+ + + Sbjct: 1 MSPDQIREMSVVNITRPDTYDEDGY-PIENGLMDSRL---------------GVIDPSLK 44 Query: 85 CEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLY---- 140 C CG + + + G I+LA P H+ F + +L + RVL Sbjct: 45 CRTCGEKGGECQ---GHFGMIDLARPVIHVGFGDDIHK----ILRSTCNECGRVLLDEEE 97 Query: 141 -FESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEA----IQALLKSMDLE 195 E + E + L +E Y + + GAE I + +++ Sbjct: 98 IEEYTEKLNELQEAGESTEDLIKEVYKICKAKKAKDVCPHCGAEQEDIKIVKPIGIIEVR 157 Query: 196 QECEQLREELNETNS--------------ETKRKKLTKRIKLLEAFVQSGNKPEWMILTV 241 +E ++ E L + N K +++ + +PEWM+LTV Sbjct: 158 KEYDENGELLTDANGNPVTTDYDLTASEVREKLERIPDEDAYVLGVNPEVARPEWMVLTV 217 Query: 242 LPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQE 301 LPV P +RP + LD G + DL ++ N RL +D AP +IV + ++LQ Sbjct: 218 LPVPPVTVRPSITLDTGERSEDDLTHKLVDILRINQRLIENMDAGAPQLIVEDLWQLLQY 277 Query: 302 AVDALLDNGRRG-RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360 V DN G + RPLK+LA +KGK+GRFR NL GKRV++S R+VI+ P Sbjct: 278 HVTTYFDNEASGVPPARHRSGRPLKTLAQRLKGKEGRFRSNLSGKRVNFSARTVISPDPN 337 Query: 361 LRLHQCGLPKKMALELFKPFIYGKLELRGLATTI------KAAKKMVEREEAVVWD---- 410 + +++ G+P+ +A E+ P + + L I V + + D Sbjct: 338 ISINEVGVPEMIAKEVTVPTYVNEWNIEDLREAILNGPDAHPGANYVRKYNDRIKDYNKV 397 Query: 411 -------------------ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHP 451 ++ + VL NR P+LHR+ + A E ++ K +L+ Sbjct: 398 RVLDSNKETVAEMLTCGDIVMRHLKDGDIVLFNRQPSLHRMSMMAHEVRVLPYKTFRLNL 457 Query: 452 LVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLY 511 VC YNADFDGD+M +HV T E++ EA++LM +ILSP G PII D + G Y Sbjct: 458 CVCPPYNADFDGDEMNMHVFQTDESRAEAKSLMRVQEHILSPRFGGPIIGAIHDHISGAY 517 Query: 512 YMTRDCVNAKG--------EGMVLTGPKEA-------ERLYRSGLASLHARVKVRITEYE 556 +TRD + +L P + E+ Y+ + + ++K + ++ Sbjct: 518 LLTRDGFTVPEDDAFQMIRKSHLLKCPYDEYLKRDLDEKEYKQQIKEYNEKLKRKHRDWT 577 Query: 557 KDANGELVAKTSLKDTT--------------VGRAILWMIVPKG-LPYSIVNQALGKKAI 601 L+ ++L ++++ G L + +++A Sbjct: 578 GKELFSLLLPSTLNMNYRAEICRKCEECMAEACEYDSYVVIKDGQLTHGAIDEAAYGSFS 637 Query: 602 SKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEII----SEA 657 K+L+ + G F D+ ++G + +D IPE+ E+I A Sbjct: 638 GKILDNIVKEYGPAYAKEFLDRSTDLAICGIMKTGITTSTNDEEIPEEAIEVIDAHLDNA 697 Query: 658 EAEVAEIQEQFQSGLVTAGER-------YNKVIDIWAAANDRVSKAMMDNLQTETVINRD 710 E +V ++ E ++ G + +++ + A D L D Sbjct: 698 EQKVDKLIETYEMGELQPLPGRSAEETLEMRIVQVLGEARDAAGDIAAGYLTMGKQSPDD 757 Query: 711 GQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIE-------------- 756 + N +MA +GAR S + Q+ G + G I Sbjct: 758 SYDHVMAVENHSVVMAKTGARASMLNLAQITACVGQQSVRGGRITRGYLARPLPHFRKHE 817 Query: 757 ------TPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVT 810 + ++++EGL+ +++F G R+GL DTA++TA SGY+ RRLV+ +DL V Sbjct: 818 LGARAKGFVHSSYKEGLDPVEFFFHAMGGREGLVDTAIRTAQSGYMQRRLVNALEDLNVR 877 Query: 811 EDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVL 849 D T + + G D +P + G+V D L Sbjct: 878 SDGLVTDNKNQVIQTVFGEDGIDPAKSD-FGKVANLDKL 915 >UniRef50_A8IRZ2 DNA-directed RNA polymerase n=3 Tax=Eukaryota RepID=A8IRZ2_CHLRE Length = 1789 Score = 655 bits (1690), Expect = 0.0, Method: Composition-based stats. Identities = 214/941 (22%), Positives = 356/941 (37%), Gaps = 155/941 (16%) Query: 1 MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60 M + +F + + AI+ ++ P I+++S E+ ET Y KP+ GL R Sbjct: 1 MASVDRFPFSSAPVRQVKAIQFSVWDPAEIKAYSVAEIVTSET--YEKGKPKLGGLSDPR 58 Query: 61 IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120 + RG IC G + GHI LA P HI F+K++ Sbjct: 59 M---------------GTMDRGGICTTDGANANDSP---GYFGHIALARPVYHIGFIKTV 100 Query: 121 PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQ----YLDALEEFGDEF 176 +R + V Y S ++++ +++ + Y L + G + Sbjct: 101 -----------VRVLRCVSYHTSRLLVDKDDPKYAYGLRISDSEKRLRYFVHLCQ-GKKM 148 Query: 177 DAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKK---------LTKRIKLLE-- 225 D G L + + E +L+ + + +RK+ + KRI + Sbjct: 149 DEATGNPQPSYRLDGLKIMAEFPKLKGDEEQEQDNVERKQELTAARALEIMKRIPAEDCR 208 Query: 226 --AFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLL 283 F +P+WMI+ +PV PP +RP V +D DL ++ NN +K+ Sbjct: 209 ALGFDCRFTRPDWMIIQNMPVPPPPVRPSVMMDSSSRCEDDLTHKLAEILRTNNAIKKQD 268 Query: 284 DLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAI-TGSNKRPLKSLADMIKGKQGRFRQNL 342 P ++ + LQ + DN G + RP+KS+++ +KGK GR R NL Sbjct: 269 ATGTPQHVIAEQIMALQYHITTYFDNSSPGIPKSNQKSGRPIKSISERLKGKSGRIRGNL 328 Query: 343 LGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAA----- 397 +GKRVD+S R+VIT P + + + G+P +AL L P + L + Sbjct: 329 MGKRVDFSARTVITGDPNIGIDELGVPWSIALNLTFPETVTPFNIEKLQKLVDNGPNPPP 388 Query: 398 ----KKMVEREEAVV------------------------------------WDILDEVIR 417 K + RE+ + +I Sbjct: 389 GETGAKHIIREDGRRVSLAVVKGDADRRLEPGDKVGGKGTQMTADGGGVARCCVERHLIN 448 Query: 418 EHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQ 477 VL NR P+LH++ + ++ +L+ V YNADFDGD+M +HV T E + Sbjct: 449 GDLVLFNRQPSLHKMSMMGHRVRILPYSTFRLNLSVTTPYNADFDGDEMNMHVAQTHETR 508 Query: 478 LEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLY 537 E LMM NI+SP +P++ QD +LG MT+ + + + + Sbjct: 509 AEMANLMMVPRNIVSPQANKPVMGIVQDALLGTRMMTKRDIFIEKDNFM---NCVMGIED 565 Query: 538 RSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWM-----------IVPKG 586 G + A +K R K V +LK+ + + I Sbjct: 566 WDGTVPMPAVLKPRPLWTGKQIFSMFVPDVNLKNKSAWYKDADVPDMSVDDAQVLIRQGE 625 Query: 587 LPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVI 646 L + + +++ + G F + + T + G S+GI D V Sbjct: 626 LLTGALCKKTVGNGAGGLVHLTWLEHGPHAARGFINNVQRTVNYWVLNHGMSIGIGDTVA 685 Query: 647 PEKK----HEIISEAEAEVAEIQEQFQSGLVTA-------GERYNKVIDIWAAANDRVSK 695 K +EII EA+ +V E+ E++Q + A +V I D K Sbjct: 686 DAKTMAKVNEIIEEAKRKVKEVVEKYQQNALEAQPGRTIHESFEAQVNQILNKCRDDAGK 745 Query: 696 AMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM-------- 747 A ++ N+I M +G++GS I Q+ G G Sbjct: 746 AAYMSVDLS---------------NNIIKMVTAGSKGSNINISQMMGCVGQQNVEGKRIP 790 Query: 748 ------------AKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGY 795 G + ++ GL ++F G R+GL DTA+KTA++GY Sbjct: 791 FGFQNRTLPHFNKDDLGPEARGFVGNSYLRGLTPQEFFFHAMGGREGLIDTAVKTASTGY 850 Query: 796 LTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLR 836 + RRLV +D+VV + + + G D + +R Sbjct: 851 IQRRLVKAMEDMVVRYGGTVRNSQGDVVQFLYGEDGMDAVR 891 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 90/461 (19%), Positives = 172/461 (37%), Gaps = 83/461 (18%) Query: 912 GEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSG 971 GE +G +AAQS+GEP TQ+T+ TFH G +++ ++ ++ K++ + Sbjct: 1077 GECVGTVAAQSLGEPTTQMTLNTFHFAGVSAKNVTLGVPRLTEL----INLAKNIKTPTL 1132 Query: 972 KLVITSRNTELKLIDEFGRTKESY----KVPYGAVLAKGDGEQVAGGETVANWDPHTMPV 1027 + + E K + ++K Y V + + +TV D + Sbjct: 1133 TVHLLPGLRENKDAAKEIQSKLEYTCFKNVVKTTEIWYDPVDPANANQTVIGEDEEMLSS 1192 Query: 1028 ITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGND 1087 +++G D+ ++ L + A G + D + Sbjct: 1193 YYDLAGD---EDLAVLPRLSHW------LLRFELNRGAMLDKGLTLGAVQKALQDEWEDF 1243 Query: 1088 VLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLA-RIPQESGGTKDI-TGGLPRVADLF 1145 + + D A+ + +V+ E+ + S D + + SG D+ G+P + +F Sbjct: 1244 INVLVNDDNAEKLIMRIRVVKTEEASKDESADPTEDTMLKLSGAIMDVRLHGVPNIRKVF 1303 Query: 1146 EARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVE 1205 I AE + K K I +G + Q+ FEG V+ Sbjct: 1304 ---------IRAENQHVYDKEKGAFRKYEEWILDTEGIN--------LEQVLAFEG--VD 1344 Query: 1206 RGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKAT 1265 +S+ ++L + G+ A + EV++V + G +N +H+ +V M K Sbjct: 1345 SRRTMSNSII---EVLEVLGIEAARAALFKEVRNVIQFDGSYVNYRHLACLVDIMTCKGC 1401 Query: 1266 IVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATES--FISAA 1323 L+ IT+ + ++ Sbjct: 1402 ----------------------------------------LMAITRHGINRNGNGPMTQC 1421 Query: 1324 SFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 SF+ET +L AA+ G+RD+L G+ +N+++G + P GTG Sbjct: 1422 SFEETVDILYRAAMFGERDKLMGVSDNIMMGNMCPLGTGSF 1462 >UniRef50_A4S3M0 DNA-directed RNA polymerase n=34 Tax=Eukaryota RepID=A4S3M0_OSTLU Length = 1646 Score = 653 bits (1685), Expect = 0.0, Method: Composition-based stats. Identities = 212/924 (22%), Positives = 355/924 (38%), Gaps = 147/924 (15%) Query: 1 MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60 M +F + + +A++ + SPD IR S ++ ET Y +P+R GL R Sbjct: 1 MSVHDRFPHSTAELCRVNAVQFGVLSPDEIRKMSVCAIETSET--YEKGRPKRGGLSDPR 58 Query: 61 IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120 + RG +CE G + QT GH+ELA P H F+ Sbjct: 59 M---------------GTMDRGAVCETDGCDSVQTP---GYFGHLELAKPVYHHGFI--- 97 Query: 121 PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAK- 179 ++ LR + V Y S +++ + Q++ + + L++ D K Sbjct: 98 --------NVVLRILRCVGYSSSQLLLHKDEDP-KFAQLMRIKNPKNRLKKLTDACKTKS 148 Query: 180 ----MGAEAIQALLKSMDLEQECEQLREELNETNSETKR-----------KKLTKRIKLL 224 G Q L+ M + E + EEL E K K ++ Sbjct: 149 VCPYTGTAQPQYRLEGMKITAEFKHRDEELLPEGGERKVIVTAERALQILKAISDEDCRA 208 Query: 225 EAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLD 284 +P+W IL V+PV PP +RP V D + DL ++ N L+R Sbjct: 209 LGLDPEHARPDWFILQVMPVPPPPVRPSVSFDASTRSEDDLTVKLMEIVRTNKNLERQEQ 268 Query: 285 LAAPDIIVRNEKRMLQEAVDALLDNGRRGRA-ITGSNKRPLKSLADMIKGKQGRFRQNLL 343 AP ++ +LQ + +DN G + R +KS+++ +KGK GR R NL+ Sbjct: 269 NGAPQHVILEFTELLQYHIMTFMDNTVAGMPRALTRSGRSIKSISERLKGKAGRIRGNLM 328 Query: 344 GKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAA------ 397 GKRVD+S R+VIT P L L + G+P +AL + P + L ++ Sbjct: 329 GKRVDFSARTVITPDPNLMLDELGVPWSIALNMTYPETVTPYNIDRLQRLVENGPHPPPG 388 Query: 398 --------------------KKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAF 437 KK E+ + + ++ VL NR P+LH++ I Sbjct: 389 ETGARYIIREDGQRLDLRFLKKSSEKRLEYGYKVERHMVNGDVVLFNRQPSLHKMSIMGH 448 Query: 438 EPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGE 497 ++ +L+ V YNADFDGD+M +H+P + E + E + LMM I+SP + Sbjct: 449 RVRIMPYSTFRLNLSVTPPYNADFDGDEMNMHLPQSYETRAEVKELMMVPKMIVSPQANK 508 Query: 498 PIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARV-KVRITEYE 556 P++ QD +LG +T+ K+ L +V K I + + Sbjct: 509 PVMAIVQDTLLGCRLITKRDTFIT---------KDVFMNIIMWLEDWDGKVPKPAILKPQ 559 Query: 557 KDANGELVAKTSLKDTTVGRAILWMIVPKGLPY------------SIVNQALGKKAISK- 603 G+ V L + R W + + ++ L KK + Sbjct: 560 PLWTGKQVFSMMLPKVNLLRTSAWAKDSDDMAFSVDDTGVRIEQGELLTGTLCKKTMGSG 619 Query: 604 ---MLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEK----KHEIISE 656 +++ + G Q + G +VGI D + ++ + I++ Sbjct: 620 GGGLIHVTWEEWGPIAARGLISQTQTLVNYWVLHHGFTVGIADTIADDETMFSINNTITK 679 Query: 657 AEAEVAEIQE-------QFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINR 709 A+A+V E+ + + Q G+ KV I A D + ++L Sbjct: 680 AKADVKEVIKLAQNNELELQPGMTMQQSFEQKVNQILNKARDNAGNSAQNSL-------- 731 Query: 710 DGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM--------------------AK 749 + N++ MM +G++GS I Q+ G Sbjct: 732 -------MDTNNVKMMVTAGSKGSFLNISQMIACVGQQNVEGKRIPYGFKGRTLPHFSKD 784 Query: 750 PDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVV 809 G + ++ GL ++F G R+GL DTA+KT+ +GY+ RRLV +D+VV Sbjct: 785 DFGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDVVV 844 Query: 810 TEDDCGTHEGIMMTPVIEGGDVKE 833 D + + + G D + Sbjct: 845 KYDGTVRNSVGDVIQFLYGEDGMD 868 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 80/485 (16%), Positives = 163/485 (33%), Gaps = 90/485 (18%) Query: 902 DLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLS 961 + + G+ IG +AAQSIGEP TQ+T+ TFH G +++ + + Sbjct: 1047 SRFKMALAPPGDGIGTVAAQSIGEPATQMTLNTFHFAGVSAKNVT-----------LGVP 1095 Query: 962 NVKSVVNSSGKLVITSRNTELKLIDEFGRTKESY---KVPYGAVLAKGDGEQVAGGETVA 1018 +K ++N + + S LK RT+ + Y + + +V Sbjct: 1096 RLKEIINIAKSIKTPSLTIALKPELAGDRTRAKDCQASLEYTTLHSVAAVTEVHYDP--- 1152 Query: 1019 NWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPAL 1078 DP + + + +M D + L ++ D+ Sbjct: 1153 --DPTDTVIEEDREFVRAYYEMPDEDVDPSRMSPWLLRIELNREMMVDKKLLMADVAER- 1209 Query: 1079 KIVDAQGNDVLIPGTDMPAQYFLPGKAIVQ---LEDGVQISSGDTLARIPQESGGTKDIT 1135 I + D+ D ++ + I+ ++ + + + + + Sbjct: 1210 -INEDFAGDLSCIFNDDNSEKLVLRIRIMNPEGVKYEDASTEDEVFLKRLETQMLSNLAL 1268 Query: 1136 GGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQ 1195 G+P + +F R K+ AI ++ + + + V + Sbjct: 1269 RGIPDIKKVF-IREAKQNAINSKTELFEKTTEWMLDTEGVNLLEVMAHPDVDFTRTTSNH 1327 Query: 1196 LNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEV 1255 L +++++ G+ AV ++ E++ V G +N +H+ + Sbjct: 1328 LI---------------------EVIQVLGIEAVRNTLLRELRGVIEFDGSYVNYRHLAI 1366 Query: 1256 IVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLA 1315 +V M Y L+ IT+ + Sbjct: 1367 LVEVMT----------------------------------------YRGHLMSITRHGIN 1386 Query: 1316 --TESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG-YAYH-QDRMR 1371 + SF+ET +L EA+ +RD + G EN+++G+ P GTG + H D + Sbjct: 1387 RVETGPLMRCSFEETVDILMEASAFSERDNMTGPSENIMLGQFCPIGTGEFKLHLNDELL 1446 Query: 1372 RRAAG 1376 + A Sbjct: 1447 QDAVE 1451 >UniRef50_D2VMG0 RNA polymerase II largest subunit n=1 Tax=Naegleria gruberi RepID=D2VMG0_NAEGR Length = 1650 Score = 651 bits (1679), Expect = 0.0, Method: Composition-based stats. Identities = 218/951 (22%), Positives = 369/951 (38%), Gaps = 130/951 (13%) Query: 7 FLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVK 66 F + D I+ + +P ++ S E+ ET P+ GL R+ Sbjct: 5 FTYSPVDLSSIDRIQFGILNPHVVEKMSACEIIHAET--EEKGLPKEGGLMDLRM----- 57 Query: 67 DYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGL 126 + + C CG V++ GH+ + PT +I FLK+ I Sbjct: 58 ----------GTVNSALSCMTCGCGVSECP---GHFGHVNI-HPTFNILFLKT----IVK 99 Query: 127 LLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQ 186 +L R+L+ + + +++ E L +++ D G IQ Sbjct: 100 ILKCTCVHCSRLLFNRNTPEFKRIQQIANKRKRFNELMKLKPMDKCM--IDDYTGCGGIQ 157 Query: 187 ALLKSMDL-----EQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTV 241 + L ++++E+ + K+++ + L F + PEWMILT Sbjct: 158 PKISKNQLSITQIFPNSNEIKQEIKAESVLQIFKRISTQDLELLGFDSINSNPEWMILTC 217 Query: 242 LPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQE 301 LPV PP +RP V A DL +I N +++L +P + + ++LQ Sbjct: 218 LPVPPPHVRPSVMHGLNDKAEDDLTHKLADIIKSNATIQKLSKSGSPQHYLDDMIKILQY 277 Query: 302 AVDALLDNGRRGRAI-TGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360 ++N G + T N R LKSL +KGK+GR R NL+GKRVD+S R+VIT P Sbjct: 278 HCATYMNNEISGVPMSTTKNGRMLKSLRQRLKGKEGRVRGNLMGKRVDFSARTVITPDPT 337 Query: 361 LRLHQCGLPKKMALELFKPFIYGKLELRGLATTI------KAAKKMVEREEAVVWD---- 410 + + Q G+P+ +A + P + + K V R++ D Sbjct: 338 IEIDQVGVPRTIARNMTVPEKVTPFNFERMNELVMNGPETYPGAKYVLRDDGTRIDLKFL 397 Query: 411 ---------------ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCA 455 I + VL NR P+LH++ + ++ +L+ V Sbjct: 398 SDRSTDQVQLQYGYTIERHLQDGDVVLFNRQPSLHKMSMMGHRVKVMPYSTFRLNLSVVT 457 Query: 456 AYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTR 515 YNADFDGD+M +H+P +L+ + E LMM NI++P + P+I QD +L TR Sbjct: 458 PYNADFDGDEMNLHLPQSLQTKTELLELMMVPKNIITPQSHRPLIALVQDTLLAGSKCTR 517 Query: 516 DCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKT-------- 567 V + + M+ +G + A +K + K L+ Sbjct: 518 RDVYIEKDVMM---NCLMYLQDFNGQLPVPAILKPKPLWTGKQLFSLLLPSIDYYGISST 574 Query: 568 --------SLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAI----SKMLNTCYRILGLK 615 D + +I+ G ++ L KK++ +++ G + Sbjct: 575 HDDEVGDLKHLDDHLPEFDTGIIISNG---ELLTGILDKKSLGSSHGSLIHIIVNDKGTQ 631 Query: 616 PTVIFADQIMYTGFAYAARSGASVGIDDMVIP----EKKHEIISEAEAEVAEIQEQFQSG 671 F Q + + + G SVGI D + +K EII+ AE EV +I +Q +G Sbjct: 632 EGKKFLGQCQHVLNYWLLQHGFSVGIGDTIADGETVKKIEEIINNAEREVKKIVKQAHNG 691 Query: 672 LVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGAR 731 LVTA +++ L ++ NSI M SG++ Sbjct: 692 LVTAEPGR--------TVEQSFERSINSTLNAAREDAGMHVKKSLKDSNSIKSMVTSGSK 743 Query: 732 GSAAQIRQLAGMRGLM--------------------AKPDGSIIETPITANFREGLNVLQ 771 GS I Q+ G G + ++ GL + Sbjct: 744 GSYLNISQIIACVGQQNVEGKRVPFGFKNRTLPHFSTDDHGPESRGFVANSYLRGLTPQE 803 Query: 772 YFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDV 831 +F T G R+GL DTA+KTA +GY+ RRLV +D+ V D + + G D Sbjct: 804 FFFHTMGGREGLIDTAVKTAETGYIQRRLVKAMEDVKVNYDGTVRDASGNIIQFLYGEDG 863 Query: 832 KEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHE--QWCDLLEENSVDAV 880 +P++ L+ + ++L + + E +W LE++++ Sbjct: 864 MDPIK------------LESQSFEMLSLSDEIFEEKYKWSTKLEDHNIPES 902 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 84/460 (18%), Positives = 170/460 (36%), Gaps = 79/460 (17%) Query: 906 GHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKS 965 ++ GE +G IAAQSIGEP TQ+T+ TFH G +S+ ++K +L +V Sbjct: 1048 NGLVQPGEMVGCIAAQSIGEPATQMTLNTFHNAGVSSKNVTLGVPRLK-----ELLDVSR 1102 Query: 966 VVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTM 1025 + + G + + + ++ E + G + + + D Sbjct: 1103 NIKTPGLTIYLKNDNDCEIAKMVKEELEYSNL----------GSITRSTQIIYDPDIFNS 1152 Query: 1026 PVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQG 1085 + ++ +M++ +TI + + S VLD + + A I Sbjct: 1153 VIESD---QFFIREMLEEKTID--PNTFSPWSLRFVLDREMMSEHLNMSQIANIIKQEFQ 1207 Query: 1086 NDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA-DL 1144 ND+ +D ++ + I+++ + + S + + I L R+ ++ Sbjct: 1208 NDISCFYSDDNSEELI---LIIRIRNSEKSKS-----ETEDDEEDSSMIVEFLKRLESNM 1259 Query: 1145 FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV 1204 K L ++ F ++ + + V+ + L+V +V Sbjct: 1260 LSQLSLKGHNNLKKV-----FYRKDENIKFFSNKGVEKKTRWSLETEGCDLLSVMSHPQV 1314 Query: 1205 ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 1264 + + +S+ ++ ++ G+ A ++ E++ V G +N +H+ ++ M + Sbjct: 1315 DFRNTLSN---DVIEVEKVLGIEACRNLLMKELRKVIEFDGSYVNYRHLAILCDVMTQGG 1371 Query: 1265 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLA--TESFISA 1322 I +T+ LA + Sbjct: 1372 VIT----------------------------------------AVTRHGLARSDNGPLMR 1391 Query: 1323 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362 SF++T VL EAA D L+G+ NV+VG+L P GTG Sbjct: 1392 CSFEQTVEVLVEAAQFSDVDTLKGVSANVMVGKLAPIGTG 1431 >UniRef50_D2VNK8 RNA polymerase II n=2 Tax=Naegleria gruberi RepID=D2VNK8_NAEGR Length = 1757 Score = 649 bits (1675), Expect = 0.0, Method: Composition-based stats. Identities = 207/903 (22%), Positives = 345/903 (38%), Gaps = 138/903 (15%) Query: 33 WSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEV 92 S EV ET KP+ GL R+ G + + + C CG Sbjct: 1 MSVCEVLHAET--QEKGKPKESGLMDLRM-GTIDHH--------------LSCLTCGGNA 43 Query: 93 TQTKVRRERMGHIELASPTAHIWFLKSLPS-------RIGLLL-DMPLRDIERVLYFESY 144 T+ GH+ + P ++ F+ ++ G LL D ++ F + Sbjct: 44 TECP---GHFGHVRI-HPVFNVLFINTVVKVLQSVCIHCGKLLADKSSLQFKKASKFVNR 99 Query: 145 VVIEGGMTNLERQQIL-----TEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECE 199 M +L R+ +E + F + G +Q + L+ E Sbjct: 100 RKRFKEMIDLCRKDKCIIETGNKENEQNQEANIDPTFQPRNGCGGLQPKISRDGLKIFAE 159 Query: 200 QLREELNETNSE--------TKRKKLTKRIKL----LEAFVQSGNKPEWMILTVLPVLPP 247 ++ E E + ++ KRI L F + +PEWMILT LP+ PP Sbjct: 160 YKKDTSAEAKQELTKQELTAERALQIFKRIPAEDLELLGFDKDNARPEWMILTCLPIPPP 219 Query: 248 DLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALL 307 +RP V + DL +I N +++ P + RMLQ + Sbjct: 220 QVRPSVHHGSADRSEDDLTHKLADIIKANAAIQKNEKSGTPLHQMEEMVRMLQYHCATYV 279 Query: 308 DNGRRGRAI-TGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQC 366 +N G T + RPLKS+ +KGK+GR R NL+GKRVD+S R+VIT P + + Q Sbjct: 280 NNEYPGVPTATTKSGRPLKSIRQRLKGKEGRVRGNLMGKRVDFSARTVITADPNIDIDQV 339 Query: 367 GLPKKMALELFKPFIYGKLELRGLATTI------KAAKKMVEREEAVVWD---------- 410 G+P+ +A + P I L + K V RE+ D Sbjct: 340 GVPRTVASNMTVPEIVTPFNFERLNELVTNGPLTYPGAKYVIREDGTRIDLRFASGKAND 399 Query: 411 ---------ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADF 461 + + +L NR P+LH++ + ++ +++ V YNADF Sbjct: 400 QIQLEYGYKVERHLQDGDVILFNRQPSLHKMSMMGHRIKVMPYSTFRMNLSVTTPYNADF 459 Query: 462 DGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAK 521 DGD+M +HVP +L+ + E LMM NI++P + P+I QD +L +TR V Sbjct: 460 DGDEMNLHVPQSLQTKAELLELMMVPRNIITPQSNRPVIALVQDTLLAASKLTRRDVFIA 519 Query: 522 GEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDT-------TV 574 + M+ + G + A +K + K L+ K +L++T T Sbjct: 520 KDLMM---NCLMHLIDFDGKLPVPAILKPKPLWTGKQLFTFLLPKVNLENTSSTHEDLTD 576 Query: 575 GRAILWMIVPKGLPYSIVN------QALGKKAI----SKMLNTCYRILGLKPTVIFADQI 624 + L +P+ +++ L KK++ +++ G+ F Q Sbjct: 577 KKDHLDHDIPEFDTKVLIDRGELVSGVLDKKSLGSSHGSLIHIIVNEKGVNEGKKFLGQC 636 Query: 625 MYTGFAYAARSGASVGIDDMV----IPEKKHEIISEAEAEVAEIQEQFQSGLVTAG---- 676 + G S+GI D + E+ E I +AE +V I + Q G + A Sbjct: 637 QRVINHWLINRGFSIGIGDTIADKATMEQIEETIRKAEKDVKLIVKDAQEGKLRAEAGRT 696 Query: 677 ---ERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGS 733 N+V + A + +L+ + N+I M +G++GS Sbjct: 697 IQQSFENQVNKVLNKAREDAGNKAKKSLKDD---------------NNIKSMVTAGSKGS 741 Query: 734 AAQIRQLAGMRGLM--------------------AKPDGSIIETPITANFREGLNVLQYF 773 I Q+ G G + ++ GL ++F Sbjct: 742 YINISQIIACVGQQNVEGKRIPYGFRNRTLPHFAQDDHGPESRGFVANSYLRGLTPQEFF 801 Query: 774 ISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKE 833 T G R+GL DTA+KT+ +GY+ RRL+ +D++V D + + G D + Sbjct: 802 FHTMGGREGLIDTAVKTSETGYIQRRLIKAMEDIMVKYDGTVRDAQGNVVQFLYGEDGMD 861 Query: 834 PLR 836 + Sbjct: 862 AHK 864 Score = 152 bits (385), Expect = 7e-35, Method: Composition-based stats. Identities = 103/512 (20%), Positives = 174/512 (33%), Gaps = 70/512 (13%) Query: 901 RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL 960 R + GE +G +AAQSIGEP TQ+T+ TFH G +S+ ++K +L Sbjct: 1059 RMRFHNCLAQPGEMVGSVAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLK-----EL 1113 Query: 961 SNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANW 1020 NV + + G + N + ++ KE + Y + V ++ + Sbjct: 1114 LNVAKNIKTPGLTIYL-NNEYIGDFEKAKMVKEDLE--YTTL------GHVTAATSIV-Y 1163 Query: 1021 DPH-TMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALK 1079 DP VI E F+ T + L S LD + + A K Sbjct: 1164 DPEPANSVIEEDREFIEELLEELKDTAVLDSTTLNPWSLRFELDKMMMSDTLTMAQVAKK 1223 Query: 1080 IVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDT-LARIPQE----SGGTKDI 1134 I + ND+ +D A + +V++ + D +A+ P + +DI Sbjct: 1224 IQEEFQNDITCFYSDDNADKLI---LVVRIHKDDKEKEKDAQVAKDPSDEVLRKLEEEDI 1280 Query: 1135 TGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWR 1194 E+ E A+ F +E K+ + V + Sbjct: 1281 ENSTVEFLRRLESNMLNELALKGYKDLKKVFLREENDKKVFSSSGVATVKQWVLDTEGCN 1340 Query: 1195 QLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIE 1254 L V V D ++IL + G+ A ++ E++ V G +N +H+ Sbjct: 1341 LLAVLSHPYV---DHTITTSNDVNEILDVLGIEACRNALMREMRKVIEFDGSYVNYRHLA 1397 Query: 1255 VIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASL 1314 ++ M L+ IT+ + Sbjct: 1398 ILCDVMTH----------------------------------------RGGLMAITRHGI 1417 Query: 1315 ATE--SFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG-YAYHQDRMR 1371 + SF+ET +L EAA D L+G+ NV+VG+L P GTG + + D Sbjct: 1418 NRSDTGPLMRCSFEETVEILIEAATFADTDTLKGVSANVMVGQLAPIGTGCFGLYLDEEL 1477 Query: 1372 RRAAGEAPAAPQVTAEDASASLAELLNAGLGG 1403 + A + + SL G Sbjct: 1478 LKQAVAVKPSFVTETKSMYGSLGATTPYHTSG 1509 >UniRef50_Q9MUS6 DNA-directed RNA polymerase subunit beta' n=2 Tax=Viridiplantae RepID=RPOC1_MESVI Length = 668 Score = 647 bits (1668), Expect = 0.0, Method: Composition-based stats. Identities = 316/601 (52%), Positives = 419/601 (69%), Gaps = 62/601 (10%) Query: 11 QTKTEEFDAIKIALASPDMIRSWS---------FGEVKKPETINYRTFKPERDGLFCARI 61 K F+ I+I LASP+ I W GEV + ETINYRT KPE DGLFC RI Sbjct: 3 PKKLVHFEYIQINLASPERILQWGQRTLSNGEIVGEVTRSETINYRTLKPEMDGLFCERI 62 Query: 62 FGPVKDYECLCGKYKRLKHRG-----VICEKCGVEVTQTKVRRERMGHIELASPTAHIWF 116 FGPVKD+EC CG+YKR+++ ++CE+CGVEV ++ VRR RMGHI+LASP H+W+ Sbjct: 63 FGPVKDWECHCGRYKRVRYNKNSEISIVCERCGVEVIESGVRRHRMGHIKLASPVTHVWY 122 Query: 117 LKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQY-------LDAL 169 LK +PS I ++L MP +D+E ++Y+ + ++ Q LTE ++ LD L Sbjct: 123 LKGIPSYISVILGMPRKDVENIVYYNN----NDSISFKNISQFLTENRFFSNSTDILDDL 178 Query: 170 EEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNS------------------- 210 ++ + G EAI +LK+ DL+ +++RE+L E + Sbjct: 179 LNIKEKEEEISGGEAIYKMLKNFDLKATAQKIREDLAENEAAWTQSSFFNGEDSDWVLDE 238 Query: 211 -----------------ETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLV 253 KR KL KR++++ F+ +G KPEWM+L++LPVLPP+LRP+V Sbjct: 239 NQWNKKNQDWQIEEERRNKKRNKLIKRLRIINHFIATGAKPEWMVLSILPVLPPELRPMV 298 Query: 254 PLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRG 313 LDGGRFATSDLNDLYRRVINRNNRL +L ++ AP+I+VR+EKRMLQE+VDAL+DNG+RG Sbjct: 299 QLDGGRFATSDLNDLYRRVINRNNRLAKLNNMLAPEIVVRSEKRMLQESVDALIDNGKRG 358 Query: 314 RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMA 373 +A+ G+NK PLKSL+D+IKGKQGRFRQNLLGKRVDYSGRSVI VGP L+LHQCGLPK+MA Sbjct: 359 KALVGNNKIPLKSLSDIIKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKLHQCGLPKEMA 418 Query: 374 LELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLG 433 +ELF+PF+ L GLA IK AKK+++ + ++W+IL++VI+ HPVLLNRAPTLHRLG Sbjct: 419 IELFQPFVIHTLINEGLANNIKGAKKIIQNSDPILWEILNQVIQGHPVLLNRAPTLHRLG 478 Query: 434 IQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSP 493 IQAFEP+L+EG+AIQLHPLVC A+NADFDGDQMAVH+PL+LEAQ EAR LM++++N+LSP Sbjct: 479 IQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHIPLSLEAQTEARLLMLASSNLLSP 538 Query: 494 ANGEPIIVPSQDVVLGLYYMTRDCVNAKG-EGMVLTGPKEAERLYRSGLASLHARVKVRI 552 A G PII PSQD+VLG YY+T + + +G + + ++ Y +LH V VR Sbjct: 539 ATGLPIISPSQDMVLGCYYLTTEDIRLRGTKSHYFSSLEQVIMAYDQKKINLHTIVWVRF 598 Query: 553 T 553 + Sbjct: 599 S 599 >UniRef50_Q8SSC4 DNA-directed RNA polymerase II subunit RPB1 n=17 Tax=Eukaryota RepID=RPB1_ENCCU Length = 1599 Score = 644 bits (1660), Expect = 0.0, Method: Composition-based stats. Identities = 203/902 (22%), Positives = 353/902 (39%), Gaps = 124/902 (13%) Query: 15 EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74 ++ +I+ L SPD +R+ S + PE + P+ GL R+ + Y Sbjct: 8 KQIKSIQFGLFSPDEVRNGSVALIVHPEVM--EGGVPKTGGLIDLRMGTTDRMY------ 59 Query: 75 YKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRD 134 +C+ CG + GHIEL P H+ ++ + + Sbjct: 60 ---------LCQSCGGDNFSCP---GHFGHIELTKPMFHVGYISKI-----------KKV 96 Query: 135 IERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFD-AKMGAEAIQALLKSMD 193 +E V ++ S + I + + E G+ D + G Q ++K Sbjct: 97 LECVCFYCSKIKIPRKGIKSTLSNVWGMSKGRSVCE--GEVLDNGRSGCGNKQPVIKREG 154 Query: 194 LE-------QECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLP 246 L +E + + LN + KK++ + F ++PEWMILTVL V P Sbjct: 155 LTLVAFMKGEESNEGKVMLNGERVYSIFKKISDEDSVYMGFDLKYSRPEWMILTVLLVPP 214 Query: 247 PDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDAL 306 P +RP + ++G DL +I N LK+ AP IVR+ +++LQ V Sbjct: 215 PAVRPSIVMEGSLRGEDDLTHKLADIIKSNGYLKKYEQEGAPGHIVRDYEQLLQFHVATF 274 Query: 307 LDNGRRGRA-ITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQ 365 +DN G + RPLKSL+ +KGK+GR R NL+GKRVD+S R+VIT P + L + Sbjct: 275 IDNDIGGLPQALQKSGRPLKSLSARLKGKEGRIRGNLMGKRVDFSARTVITPDPNISLEE 334 Query: 366 CGLPKKMALELFKPFIYGKLELRGLATTIK------AAKKMVEREEAVVWD--------- 410 G+P ++A P + L ++ V R + D Sbjct: 335 VGVPLEIAKIHTFPEKVTSFNIDRLEKLVRAGPNEHPGANYVLRSDGQKIDLNFNRSDIR 394 Query: 411 ------ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGD 464 + + VL NR P+LH++ + A ++ K +L+ V + YNADFDGD Sbjct: 395 LEEGYVVERHMQSGDVVLFNRQPSLHKMSMMAHYARVMGNKTFRLNLSVTSPYNADFDGD 454 Query: 465 QMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGE 523 +M +H+P + ++ E L + + I+SP + +P++ QD + GL T RD + E Sbjct: 455 EMNLHMPQSYTSKAELEELALVSRQIISPQSNKPVMGIVQDTLTGLRLFTLRDTFLNERE 514 Query: 524 GMVLTGP-----------KEAERLYRSGLASLHARV--KVRITEYEKDANGELVAKTSLK 570 M L + R G ++ K I + + G+ V L Sbjct: 515 VMSLLYAVNLEFCDIPLGDAVQTGLRKGKDYDIMKILRKPAIAKPMRLWTGKQVLSFVLP 574 Query: 571 DTTV-------------GRAILWMIVPKG-LPYSIVNQALGKKAISKMLNTCYRILGLKP 616 + +I+ G + ++++ +++ + G K Sbjct: 575 NLNYIGLSSEHDDDDKENIGDTRVIIQDGYIHSGVIDKKAAGATQGGLVHIIFNDFGPKR 634 Query: 617 TVIFADQIMYTGFAYAA-RSGASVGIDDMVIPEKKHEI----ISEAEAEVAEIQEQFQSG 671 F D + A+ S+GI D + K ++ I +A+ EV+ + E + Sbjct: 635 AAQFFDGVQRMINAFMTGIHTFSMGIGDTIADPKTVKVVESAIRKAKEEVSALIENARQN 694 Query: 672 LVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGAR 731 + + + L ++ + N++ M +G++ Sbjct: 695 RLERLPGM--------TMKESFESHLNLVLNRARDVSGTSAQRSLSENNNMKTMVLAGSK 746 Query: 732 GSAAQIRQLAGMRGLMAKPDGSI--------------------IETPITANFREGLNVLQ 771 GS I Q+ G I + ++ GL+ + Sbjct: 747 GSFINISQVTACVGQQNVEGKRIPFGFSHRTLPHFVKDDYTGKSRGFVENSYLTGLDPEE 806 Query: 772 YFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDV 831 +F G R+GL DTA+KTA +GY+ RRLV +D +V +D+ ++ + G D Sbjct: 807 FFFHAMGGREGLIDTAIKTAETGYIQRRLVKALEDAIVRQDESVRSGNGLVYQIKYGEDG 866 Query: 832 KE 833 + Sbjct: 867 FD 868 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 80/458 (17%), Positives = 150/458 (32%), Gaps = 102/458 (22%) Query: 909 INKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVN 968 I E +G +AAQS+GEP TQ+T+ TFH+ G AS + +K + N Sbjct: 1043 ITPNEMVGTLAAQSVGEPATQMTLNTFHLAGVASTVTM------------GVPRLKEIFN 1090 Query: 969 SSGKLVITSRNTELKLIDEFGRTKESYKVPYGAV--LAKGDGEQVAGGETVANWDPHTMP 1026 + L + + ++ L E G++ E+ K + L D + Sbjct: 1091 VTKNL--KTPSMKIYLDREHGKSIEAAKTIQNEIECLTVKD---------LC-------- 1131 Query: 1027 VITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGN 1086 + + + I G I+ D + D +R + G Sbjct: 1132 ----LFSEIYYDPEITGTEISDDKDFVEAYFEFPDEDVDFSCLSPFLMRLVVDRAKLVGR 1187 Query: 1087 DVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFE 1146 + + M + L G A V D ++ + R+ + + + L Sbjct: 1188 GINLEYVAMFIRKELGGGAHVICSDENAVN---MVVRVRTTKSEDESLNFYTTALNSLLR 1244 Query: 1147 ARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVER 1206 + K +++ I+ + + V Sbjct: 1245 LQ-----------------LGGYKNVKKVYISEDKDRKEWYLQTDGICLSQILGNPAVNS 1287 Query: 1207 GDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATI 1266 IS+ +I G+ A I+ E+ V G +N +H+ ++ M + Sbjct: 1288 RLTISNDLV---EIAETLGIEAARESILRELTIVIDGNGSYVNYRHMSLLADVMTMRGY- 1343 Query: 1267 VNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLAT--ESFISAAS 1324 L GIT+ + + +S Sbjct: 1344 ---------------------------------------LCGITRHGVNKVGAGALKRSS 1364 Query: 1325 FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362 F+ET +L +AA+ +++ RG+ EN+++G+L P GTG Sbjct: 1365 FEETVEILLDAALVSEKNICRGITENIMMGQLAPMGTG 1402 >UniRef50_P35084 DNA-directed RNA polymerase II subunit rpb1 n=10 Tax=cellular organisms RepID=RPB1_DICDI Length = 1727 Score = 641 bits (1654), Expect = 0.0, Method: Composition-based stats. Identities = 230/1004 (22%), Positives = 380/1004 (37%), Gaps = 142/1004 (14%) Query: 7 FLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVK 66 F + + + ++ + SPD IR+ S V+ PET Y KP+ GL + K Sbjct: 5 FPPSSAELRKVKRVQFGILSPDEIRNMSVARVEHPET--YENGKPKAGGLLDPAMGTIDK 62 Query: 67 DYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWF-------LKS 119 C+ C + + GHIELA P HI F L+ Sbjct: 63 TQR---------------CQTCSGTMAECP---GHFGHIELAKPVFHIGFIDTVLKILRC 104 Query: 120 LPSRIGLLL-DMPLRDIERVLYFESYVVIEGGMTNLERQQ----ILTEEQYLDALEEFGD 174 + LL D + L + + + + + I EE+ L + + Sbjct: 105 VCYHCSKLLTDTNEHSFRQALKIRNQKHRLNAVVDCCKNKKVCAIGGEEEEEHDLSKTDE 164 Query: 175 EFD------------AKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIK 222 E D K+ E ++ +++ D+ E + + L+ K++ Sbjct: 165 ELDKPVKHGGCGNVLPKITKEDLKIIVEFKDVTDESIEKKSVLSAERVLNILKRIKDEDS 224 Query: 223 LLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL 282 + +WMI TVLPV PP +RP + +D DL ++ N L+R Sbjct: 225 RAMGINPDWARADWMIATVLPVPPPPVRPSIMMDTSTRGEDDLTHKLADIVKANRELQRQ 284 Query: 283 LDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRA-ITGSNKRPLKSLADMIKGKQGRFRQN 341 AP I+ + LQ V +DN G + RPLKS+ +KGK+GR R N Sbjct: 285 EKNGAPAHIIAEATQFLQFHVATYVDNEIPGLPQAQQRSGRPLKSIRQRLKGKEGRIRGN 344 Query: 342 LLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIK------ 395 L+GKRVD+S R+VIT P L + Q G+P+ +AL L P + + I+ Sbjct: 345 LMGKRVDFSARTVITADPNLSIDQVGVPRSIALNLTYPETVTPFNIDKMRELIRNGPSEH 404 Query: 396 AAKKMVEREEAVVWD-----------------ILDEVIREHPVLLNRAPTLHRLGIQAFE 438 K + RE+ +D + + V+ NR P+LH++ + Sbjct: 405 PGAKYIIREDGTRFDLRFVKKVSDTHLECGYKVERHINDGDVVIFNRQPSLHKMSMMGHR 464 Query: 439 PVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEP 498 ++ +L+ V + YNADFDGD+M +HVP TLE + E +MM I+SP + P Sbjct: 465 IKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTLETRAEVIEIMMVPRQIVSPQSNRP 524 Query: 499 IIVPSQDVVLGLYYMT-RDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEK 557 ++ QD +LG T RDC K M + + G A +K + K Sbjct: 525 VMGIVQDTLLGSRLFTKRDCFMEKDLVMNILMWLPS----WDGKVPPPAILKPKQLWTGK 580 Query: 558 DANGELVAKTSL----------KDTTVGRAILWMIVPKG-LPYSIVNQALGKKAISKMLN 606 ++ +L + +I+ +G L I+ + A +++ Sbjct: 581 QLFSLIIPDINLIRFTSTHNDKEPNECSAGDTRVIIERGELLAGILCKRSLGAANGSIIH 640 Query: 607 TCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMV----IPEKKHEIISEAEAEVA 662 G +F DQ + G ++GI D + K IS A+ +V Sbjct: 641 VVMNEHGHDTCRLFIDQTQTVVNHWLINRGFTMGIGDTIADSATMAKVTLTISSAKNQVK 700 Query: 663 EIQ-----EQF--QSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEK 715 E+ +QF Q G KV + A D + D+L + Sbjct: 701 ELIIKAQNKQFECQPGKSVIETFEQKVNQVLNKARDTAGSSAQDSLSED----------- 749 Query: 716 QVSFNSIYMMADSGARGSAAQIRQLAGMRGLM--------------------AKPDGSII 755 N++ M +G++GS I Q+ G G Sbjct: 750 ----NNLKAMVTAGSKGSFINISQMMACVGQQNVEGKRIPFGFQSRTLPHFTKDDYGPES 805 Query: 756 ETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCG 815 + ++ GL ++F G R+GL DTA+KT+ +GY+ RRLV +D+ + D Sbjct: 806 RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDVSIKYDATV 865 Query: 816 THEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCD----- 870 + + G D + + + + + K T + R+ + + D Sbjct: 866 RNSLGDVIQFAYGEDGIDGCF---VENQSIDSLRKDNTELERMYRHQVDKPDYGDGWMDP 922 Query: 871 LLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEA 914 L+ E+ + R + + + R L R II GEA Sbjct: 923 LVIEHVRNDSLTRDTLEKEFE----RIKSDRSLLRNEIIPSGEA 962 Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats. Identities = 113/619 (18%), Positives = 215/619 (34%), Gaps = 99/619 (15%) Query: 798 RRLVDVAQDLVVTEDDCGTHEGIM-MTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADI 856 RRL++ AQ L D + V+E + L+ T +D Sbjct: 971 RRLINNAQKLF--NIDIRRVSDLNPAVVVLEIEKLVARLKIIATADTTEDDENFNRAWAE 1028 Query: 857 LVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIG 916 + T+L + + R ++ VC + L + + GE +G Sbjct: 1029 VYFNATMLFSILVRSTFASKRVLTEFR--LTEKAFLWVCGEIESKFL--QALAHPGEMVG 1084 Query: 917 VIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVIT 976 +AAQSIGEP TQ+T+ TFH G +S+ + + +K ++N + ++ Sbjct: 1085 ALAAQSIGEPATQMTLNTFHYAGVSSKNVT-----------LGVPRLKEIINIAKQVKTP 1133 Query: 977 SRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVR 1036 S LK R + K+ + + E + DP + + Sbjct: 1134 SLTIYLK--PHMARDMDRAKIVKSQLEYTTLANVTSATEIYYDPDPQNTIISEDAEFVNS 1191 Query: 1037 FTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMP 1096 + ++ D + L ++ D+ +V G + +D Sbjct: 1192 YFELPDEEIDVHSMSPWLLRIELDRGMVTDKKLTMADITQ--CVVRDFGLSLNCIFSDDN 1249 Query: 1097 AQYFLPGKAIVQLED--GVQISSGDTLARIPQESGGTKDITGGLPRVADLF---EARRPK 1151 A+ + +V+ ++ G D R + + ++ + G+ + +F + + PK Sbjct: 1250 AEKLILRIRMVESQETKGTDNDDDDQFLRRIESNMLSEMVLRGIKGIKKVFMRTDDKIPK 1309 Query: 1152 EPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEM-IPKWRQLNVFEGERVERGDVI 1210 + E G G R I DG E M P + V Sbjct: 1310 ----VTENGGF--------GVREEWILDTDGVSLLEVMSHPDVDHTRTTSNDIV------ 1351 Query: 1211 SDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAG 1270 +I+++ G+ AV ++ E++ V G +N +H+ ++ M Sbjct: 1352 --------EIIQVLGIEAVRNALLKELRAVISFDGSYVNYRHLAILADVMT--------- 1394 Query: 1271 SSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLA--TESFISAASFQET 1328 Y L+ IT+ + + SF+ET Sbjct: 1395 -------------------------------YRGHLMAITRHGINRVETGPLMRCSFEET 1423 Query: 1329 TRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG---YAYHQDRMRRRAAGEAPAAPQVT 1385 +L +AA+ + D+++G+ EN+I+G+L P GTG +QD ++ + P V+ Sbjct: 1424 VEILMDAAMFSETDDVKGVTENIILGQLPPLGTGSFEVFLNQDMIKNAHSIALPEPSNVS 1483 Query: 1386 AEDASASLAELLNAGLGGS 1404 D S + G G + Sbjct: 1484 YPDTPGSQTPSYSYGDGST 1502 >UniRef50_B6AG69 DNA-directed RNA polymerase n=1 Tax=Cryptosporidium muris RN66 RepID=B6AG69_9CRYT Length = 1927 Score = 641 bits (1653), Expect = 0.0, Method: Composition-based stats. Identities = 205/946 (21%), Positives = 361/946 (38%), Gaps = 155/946 (16%) Query: 8 LKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKD 67 + + ++ +I+ + SPD+IR +S EV + Y KP+ GL + G + D Sbjct: 10 PFSNKELKKIYSIEFGVLSPDLIRRYSVLEVTISDL--YENGKPKSGGLNDP-LMGTI-D 65 Query: 68 YECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLL 127 Y V+CE C +++ HIEL P HI F+ + Sbjct: 66 YH-------------VLCETCHMDIKTCP---GHFAHIELGKPMFHIGFVSVV------- 102 Query: 128 LDMPLRDIERVLYFESYVVIEGGMTNLER-QQILTEEQYLDALEEFGDEFDAKM------ 180 L+ + V + S + I+ + Q+ L L E + + Sbjct: 103 ----LKILRCVCFACSKLFIDPMDPKFKVIQKTRNPHLRLQRLVEISKTYSRCVISSDGS 158 Query: 181 GAEAIQALLKS-------------MDLEQECEQLREELNETNSETKRKKLTKRIKLLEAF 227 G +Q + +++ E R L+ K++T L F Sbjct: 159 GCGFVQPQISKDGYNLYIRQHEESRNMDDESTDSRRMLSAEEVLNIFKRITDEDMKLLGF 218 Query: 228 VQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAA 287 P W + T+LP+ PP +RP V G + DL ++++ N LKR + L + Sbjct: 219 DPKRCNPCWFVTTILPIPPPAVRPYVQF-GSDRSEDDLTLKLQQIVKLNENLKRQIRLGS 277 Query: 288 PDIIVRNEKRMLQEAVDALLDNGRRGRAITGS-NKRPLKSLADMIKGKQGRFRQNLLGKR 346 PD I+ +LQ + L++N G + + + RP+KSL +KGK GR R NL+GKR Sbjct: 278 PDHILNEMIAVLQYHLVTLVNNDLPGLPQSRTRSNRPIKSLRARLKGKDGRIRGNLMGKR 337 Query: 347 VDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI-------KAAKK 399 VD+S R+VIT P L + Q G+P +A+ L P I + L + A Sbjct: 338 VDFSARTVITGDPNLSVDQVGVPYSIAMTLTYPEIVTPYNIEELKELVERGPYEWPGATS 397 Query: 400 MVEREEAVV-------------------WDILDEVIREHPVLLNRAPTLHRLGIQAFEPV 440 +V+ + + W + + + VL NR P+LH++ I Sbjct: 398 IVQDDGTKIDLRFCNRSNNNANCVLQYGWKVERHMKNDDLVLFNRQPSLHKMSIMGHRVK 457 Query: 441 LIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPII 500 ++ +L+ V + YNADFDGD+M +H+ + E + E + LMM I+SP P+I Sbjct: 458 ILPYSTFRLNLSVTSPYNADFDGDEMNLHLAQSYETRSEIKHLMMVPKQIVSPQGNRPVI 517 Query: 501 VPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEY----- 555 QD +LGL+ +TR + + Y +G+ A ++ + Sbjct: 518 GIVQDSLLGLFLLTRKSTFLTKDRFLQLLLCIP---YWNGIIPPPAILRPQPLWTGKQII 574 Query: 556 ----------------------------------EKDANGELVAKTSLKDTTVGRAILWM 581 K N + +T + + + + Sbjct: 575 TVLLTFTTDLGEPIELNLMRDGSIVNIRSSNTSGNKSENKDEAKETIINNPWISEYDNQV 634 Query: 582 IVPKGLP-YSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVG 640 ++ +G I+ + + + +++ + +G + T +F + G +VG Sbjct: 635 LIQQGEHICGIITKKIAGSSSGSLIHILWNEIGPEKTGLFLTYTQMVVNTWLLEHGFTVG 694 Query: 641 IDDM----VIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKA 696 D+ EK + ++ V +I + Q G + + V A N ++ A Sbjct: 695 CQDIQPLNFTLEKIMTSLENSKLHVQQIIRRAQKGQLDCQPGKSLVESFEAQVNQELNSA 754 Query: 697 MMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM--------- 747 + E S N++ M G++GS I Q+ G Sbjct: 755 -------REMSGIIATENLDPSKNNMIAMVQCGSKGSTINISQIMACVGQQNVEGKRIPF 807 Query: 748 -----------AKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYL 796 G ++ ++ GL + F G R+G+ DTA KT+ +GY+ Sbjct: 808 GFRDRSLPHFLKYDYGPESRGFVSNSYLSGLTPQEVFFHAMGGREGIIDTACKTSETGYI 867 Query: 797 TRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVK--EPLRDRVL 840 RRL+ +D +V D + + + G D E + D+V+ Sbjct: 868 QRRLIKAMEDCMVQYDRTVRNCCGDIIQFLYGEDGMAGEFIEDQVI 913 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 103/594 (17%), Positives = 194/594 (32%), Gaps = 107/594 (18%) Query: 799 RLVDVAQDLVVTE---DDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRV--TAEDVLKPGT 853 R++ +AQ DD G E +T + + + + L ++ P T Sbjct: 995 RIIQMAQQKFPRYNVDDDSGRFEWGPVTIIKQVEGLLDKLLLWKNMSTKDNLDNPKLPPT 1054 Query: 854 ADIL---VPRN--TLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHI 908 D + V +N TLL L + + + + G H + R LA Sbjct: 1055 FDNIIAEVQKNATTLLGIHIRSALASKKILEIDRLGPTAFEWVIGEIQHQFYRSLAHS-- 1112 Query: 909 INKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVN 968 GE +G IAAQSIGEP TQ+T+ TFH G S+ + + ++ ++N Sbjct: 1113 ---GEMVGTIAAQSIGEPATQMTLNTFHFAGVGSKNVT-----------LGVPRLRELIN 1158 Query: 969 SSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVI 1028 + + + L+ + + +L E + + ++ Sbjct: 1159 VAKNVRTPTLTIYLENSIANDQEHAKDVL---TLLEHTTLENITTMAHILYDPKFDETIV 1215 Query: 1029 TEVSGFVR-FTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGND 1087 +V + + D I + L ++ K++ + + + Sbjct: 1216 EADKQWVSDYYEFPDDVDIKSRLGTWLLRIQLNSKLVTDKKLSMKEIGDKILMEFSNDEL 1275 Query: 1088 VLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEA 1147 I D + L +++++ +SG + D Sbjct: 1276 DCIWTDDNSDELVL----RLRIKNLEPTNSGTQ-DTVMNSEFQIDD------------GH 1318 Query: 1148 RRPKEPAILAEISGIVSFGKETKGKRRLV----ITPVDGSDPYEEMIPKWRQLNVFEGER 1203 +P P ++ E + E + L I V + Q V + + Sbjct: 1319 YQPPTPPVVEEHKFLEKLMTECLSQITLRGISNIKKVYMKEEQVTRYDILSQKIVRDNQW 1378 Query: 1204 V--------------ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKIN 1249 V E D ++ + G+ AV R ++ E++ V G +N Sbjct: 1379 VLDTDGCNLEAVLCHEAIDSTRTISNDITEVFSVLGIEAVRRALLKELRTVISFDGSYVN 1438 Query: 1250 DKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGI 1309 +H+ ++ M + L+ I Sbjct: 1439 YRHLALLCDNMTQ----------------------------------------KGHLMSI 1458 Query: 1310 TKASLAT--ESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGT 1361 T+ + + SF+ET +L +AA+ G+ D L G+ ENV+VG+L P GT Sbjct: 1459 TRHGMNRVDRGPLQKCSFEETVEILMDAAMFGETDYLNGVSENVMVGQLSPYGT 1512 >UniRef50_A2DEX5 DNA-directed RNA polymerase n=1 Tax=Trichomonas vaginalis RepID=A2DEX5_TRIVA Length = 1657 Score = 634 bits (1635), Expect = e-180, Method: Composition-based stats. Identities = 278/1481 (18%), Positives = 500/1481 (33%), Gaps = 300/1481 (20%) Query: 28 DMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEK 87 IR S V + E R KP+ G R+ + IC+ Sbjct: 4 QEIRKLSTVFVHENELYEPRDLKPKVGGTLDLRLGA---------------ASKNQICQT 48 Query: 88 CGVEVTQTKVRRERMGHIELASPTAHIWF-------LKSLPSRIGLLLDMPLRDIERVLY 140 CG G +EL P +I F LK + +L R+ Sbjct: 49 CGQPQENCP---GHFGSLELVLPVYNIGFYPAILHCLKCICKTCSNILLPNEEINSRLKK 105 Query: 141 FESYVVIEGGMTNLERQQILTEEQYLDALEEFG-----------------------DEFD 177 F S + ++ E + + G D+ Sbjct: 106 FYSKPPQTVSAKIDRVKALMKECEKVTICPHCGAINGPVKKTKTTLIITHNVGQKNDKLR 165 Query: 178 AKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWM 237 ++ + +K D ++ + + +++ + K + R L S + P M Sbjct: 166 EPFLSKFSKLDIKGDDYKKYLDNICDDITPLRALQLFKAIPTRQIPLLLSGFSVSSPADM 225 Query: 238 ILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKR 297 I+T + + P +RP V G DL ++ N+ +++ +++ Sbjct: 226 IITSIVIPPNCIRPAVIAAGEGTNQDDLTVRLVDSVHFNDEIRKSIEVGRQASSTMELWS 285 Query: 298 MLQEAVDALLDNGRR-GRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIT 356 LQ+ V++ +++ A T +P+ + +KGKQGRFR NL GKRV+YSGR+VI+ Sbjct: 286 SLQQNVNSSINSEAADTAAKTKKKNKPVIGVIQRLKGKQGRFRTNLSGKRVNYSGRTVIS 345 Query: 357 VGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVW------- 409 P + + Q +P MA L P K + L +K ++ Sbjct: 346 PDPNVNVDQVVIPVSMAKILTFPTRVTKFNKKDLMRYVKNGPDKYPGANNIIKADTGFKL 405 Query: 410 ------------------DILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHP 451 + ++ VL NR P+LHR+ I F ++E ++ + Sbjct: 406 SLAYGNKEQRAQELREGDIVERHLLDNDTVLFNRQPSLHRISIMGFRAKVMEWCTMRFNE 465 Query: 452 LVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLY 511 VCA +NADFDGD+M VH+P TLEA +AR LM N+ SP GE I+ P+QD + G + Sbjct: 466 SVCAPFNADFDGDEMNVHLPQTLEAAADARYLMNVLYNLFSPRAGEMIVAPTQDFLSGAF 525 Query: 512 YMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVR-----------ITEYEKDAN 560 +TR V + + L A VK + K + Sbjct: 526 ILTRKNVFLDYSHFTFLISQIFDNLEEVD-IPPPAIVKPYQLWTGKQVVSLMIAPNKKTD 584 Query: 561 GELVAKTSLKDTTVGRAILW-----MIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLK 615 + K+ T + + + + ++ ++L + R K Sbjct: 585 LHFTHQVGNKEYTGNKEMCKKDGYVSFLDNYMVSGVLEKSLIGGGPKSLWAIMARDHSPK 644 Query: 616 PTVIFADQIMYTGFAYAARSGASVGIDDMVIPEK----KHEIISEAEAEVAEIQEQFQSG 671 + +I Y G S+GI D+ E K+ IS+ + + ++ SG Sbjct: 645 FAAVCMQRIAKMSCRYLMNRGFSIGIMDVRPDENLTNNKNAQISKTYQDCYDKIAEYDSG 704 Query: 672 LVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGAR 731 + A K+ + A N ++S+ + + N+ +MA SGA+ Sbjct: 705 KLEAAPGMTKLATLEAFLNGQLSELRNKIGKM--------CMAELSPINTPLVMAKSGAK 756 Query: 732 GSAAQIRQLAGMRGLMAKPDGSIIE--------------------TPITANFREGLNVLQ 771 GS I Q+ G + II+ I ++F GL Sbjct: 757 GSDINICQMMACLGQQSVGGKRIIDDFIDRSIPHFKHGSKDPISKGFIASSFYTGLTPSD 816 Query: 772 YFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDV 831 +F T G R+GL D A+KTA +GY+ RRL+ +DLV+ D + G D Sbjct: 817 FFFHTMGGREGLVDAAVKTAQTGYMQRRLMKSLEDLVIAYDQTVRMSDGTIVQFTYGDDG 876 Query: 832 K---------------------------EPLRDRVLGR----VTAEDVLKPGTADILVPR 860 EPL D++ R D+ + LV Sbjct: 877 LDPLNLETTYFPVDLNRVSQEYLFKFSQEPLMDQIEARERIETLFNDIREEQQGRGLVRV 936 Query: 861 NTLLHEQWCDLLEENSVDAVK---------------VRSVVSCDTDFGVCAHCYGRDLAR 905 L ++ +++ +K +R+ + F + Sbjct: 937 PEFLIDRLKKYIDDLLEKYIKANDQYIGEDLSMDSYIRATIPFTKSFLEEFVKFCMHRCE 996 Query: 906 GHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKS 965 + G +G +A QSIGEP TQ+T+R+FH G AS + + ++ Sbjct: 997 KSMAEPGMTVGAVAGQSIGEPATQMTLRSFHFAGVASMNVT-----------LGVPRIEE 1045 Query: 966 VVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTM 1025 V+N+ ++ L R + + ++ G + G+ ++ + Sbjct: 1046 VMNAVSEIKTPIITANLL----SQRDEIAARIVKGIIDRVTLGQVCKH----IEYNQNEK 1097 Query: 1026 PVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQG 1085 ++ +D + I +T + + + P + + D Sbjct: 1098 SCYIDIE--------LDAEIIREAKLNITSETVRRSIVNT----------PKIGVKDENT 1139 Query: 1086 NDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLF 1145 ++GD R+ + K + Sbjct: 1140 A-----------------------------NNGDYNVRVFMQGANPK----AFSFIMQQL 1166 Query: 1146 EARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVE 1205 + P +++ + G+ + ++ + L V ++ Sbjct: 1167 MLKLP--DVVVSGVPGVERVHVGKENG------------CFKLFVEGNPFLKVLNTPGID 1212 Query: 1206 RGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKAT 1265 +S+ +L GV A I++E+ +V + + I+ +H+ ++ M + Sbjct: 1213 PKRTVSNHVLDVEKVL---GVEAARSVIISEITNVMKNYSLNIDRRHLMLLSDLMTIRGK 1269 Query: 1266 IVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESF--ISAA 1323 + LG+T+ LA S + A Sbjct: 1270 V----------------------------------------LGVTRHGLAKTSVSSLKLA 1289 Query: 1324 SFQETTRVLTEAAVAGKRDEL-RGLKENVIVGRLIPAGTGY 1363 SF+ T L AA DE+ G+ +VI+G P G+G Sbjct: 1290 SFETTQEHLFNAAFHN-VDEVANGVSASVILGNFAPIGSGM 1329 >UniRef50_P04050 DNA-directed RNA polymerase II subunit RPB1 n=210 Tax=Eukaryota RepID=RPB1_YEAST Length = 1733 Score = 631 bits (1628), Expect = e-179, Method: Composition-based stats. Identities = 204/910 (22%), Positives = 364/910 (40%), Gaps = 126/910 (13%) Query: 9 KAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDY 68 + ++ L SP+ +R+ S +++ PET++ + + GL R+ Sbjct: 6 YSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSI---- 61 Query: 69 ECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRI---- 124 R + C+ C + + GHI+LA P H+ F+ + Sbjct: 62 -----------DRNLKCQTCQEGMNECP---GHFGHIDLAKPVFHVGFIAKIKKVCECVC 107 Query: 125 ----GLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKM 180 LLLD + + L + + L + +++ E E+ + ++ Sbjct: 108 MHCGKLLLDEHNELMRQALAIKDSKKRFAAIWTLCKTKMVCETDVPS--EDDPTQLVSRG 165 Query: 181 GAEAIQALLKSMDLEQECEQLREELNETNSETKRK--------KLTKRIKLLE----AFV 228 G Q ++ L+ ++ E + + + K I + + F Sbjct: 166 GCGNTQPTIRKDGLKLVGSWKKDRATGDADEPELRVLSTEEILNIFKHISVKDFTSLGFN 225 Query: 229 QSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAP 288 + ++PEWMILT LPV PP +RP + + + DL ++ N L+ L AP Sbjct: 226 EVFSRPEWMILTCLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAP 285 Query: 289 DIIVRNEKRMLQEAVDALLDNGRRGRA-ITGSNKRPLKSLADMIKGKQGRFRQNLLGKRV 347 + + +LQ V +DN G+ + RP+KS+ +KGK+GR R NL+GKRV Sbjct: 286 HHAIEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRV 345 Query: 348 DYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKA-------AKKM 400 D+S R+VI+ P L L Q G+PK +A L P + + L ++ AK + Sbjct: 346 DFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYV 405 Query: 401 VEREEAVV----------------WDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEG 444 + + W + ++ PVL NR P+LH++ + A +I Sbjct: 406 IRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPY 465 Query: 445 KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQ 504 +L+ V + YNADFDGD+M +HVP + E + E L I+SP + +P + Q Sbjct: 466 STFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQ 525 Query: 505 DVVLGLYYMT-RDCVNAKGE--GMVLTGPKEAERLYRSGLASLHARVKVRITEYEKD--- 558 D + G+ +T RD + M+ P G+ A +K + K Sbjct: 526 DTLCGIRKLTLRDTFIELDQVLNMLYWVPD------WDGVIPTPAIIKPKPLWSGKQILS 579 Query: 559 ---ANGELVAKTSLKDTTVGRAILWM-IVPKGLPYSIVNQALGKKAISKMLNTCYRILGL 614 NG + + T + M I+ + + +V + + +++ R G Sbjct: 580 VAIPNGIHLQRFDEGTTLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGP 639 Query: 615 KPTVIFADQIMYTGFAYAARSGASVGIDDMV----IPEKKHEIISEAEAEVAEIQEQFQS 670 + I + +G S GI D + + E I+EA+ +V ++ ++ Q+ Sbjct: 640 QVCAKLFGNIQKVVNFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQA 699 Query: 671 GLVTA-------GERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIY 723 L+TA + V+ A D+ + NL+ N++ Sbjct: 700 NLLTAKHGMTLRESFEDNVVRFLNEARDKAGRLAEVNLK---------------DLNNVK 744 Query: 724 MMADSGARGSAAQIRQLAGMRGLMAKPDGSI--------------------IETPITANF 763 M +G++GS I Q++ G + I + + ++ Sbjct: 745 QMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSY 804 Query: 764 REGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMT 823 GL ++F G R+GL DTA+KTA +GY+ RRLV +D++V D+ + + Sbjct: 805 LRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVI 864 Query: 824 PVIEGGDVKE 833 I G D + Sbjct: 865 QFIYGEDGMD 874 Score = 137 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 95/529 (17%), Positives = 186/529 (35%), Gaps = 106/529 (20%) Query: 856 ILVPRNTLLHE---QWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLAR------G 906 +L +N ++ L + R V+ ++ + + L+ Sbjct: 999 VLRGKNEIIQNAQRDAVTLFCCLLRSRLATRRVL---QEYRLTKQAFDWVLSNIEAQFLR 1055 Query: 907 HIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSV 966 +++ GE +GV+AAQSIGEP TQ+T+ TFH G AS+ + +K + Sbjct: 1056 SVVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSG-----------VPRLKEI 1104 Query: 967 VNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMP 1026 +N + + S L+ +E K+ A+ E + DP + Sbjct: 1105 LNVAKNMKTPSLTVYLE--PGHAADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRST- 1161 Query: 1027 VITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVL--DSAERTAGGKDL---RPALKIV 1081 VI E ++ + + ++ S +L + KDL + +I Sbjct: 1162 VIPEDEEIIQL----HFSLLDEEAEQSFDQQSPWLLRLELDRAAMNDKDLTMGQVGERIK 1217 Query: 1082 DAQGNDVLIPGTDMPAQYFLPGKAIVQLE--DGVQISSGDTLARIPQESGGTKDIT-GGL 1138 ND+ + ++ + + +V+ + D + D + + E+ ++IT G+ Sbjct: 1218 QTFKNDLFVIWSEDNDEKLIIRCRVVRPKSLDAETEAEEDHMLK-KIENTMLENITLRGV 1276 Query: 1139 PRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEM-IPKWRQLN 1197 + + ++ + V K + DG + E M +P Sbjct: 1277 ENIERV----------VMMKYDRKVPSPTGEYVKEPEWVLETDGVNLSEVMTVPGIDPTR 1326 Query: 1198 VFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIV 1257 ++ + DI+ + G+ A + EV +V G +N +H+ ++V Sbjct: 1327 IYTNSFI--------------DIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLV 1372 Query: 1258 RQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATE 1317 M + L +T+ Sbjct: 1373 DVMTTQ----------------------------------------GGLTSVTRHGFNRS 1392 Query: 1318 --SFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 + SF+ET +L EA + + D+ RG+ ENVI+G++ P GTG Sbjct: 1393 NTGALMRCSFEETVEILFEAGASAELDDCRGVSENVILGQMAPIGTGAF 1441 >UniRef50_Q5CUJ2 DNA-directed RNA polymerase (Fragment) n=6 Tax=Eukaryota RepID=Q5CUJ2_CRYPV Length = 1902 Score = 630 bits (1626), Expect = e-178, Method: Composition-based stats. Identities = 194/949 (20%), Positives = 358/949 (37%), Gaps = 157/949 (16%) Query: 5 LKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGP 64 L + + + +I+ + SP++IR +S E+K + Y +P+ GL + Sbjct: 14 LNSPFSSKELKRVFSIEFGVLSPELIRKYSVLEIKVSDI--YENGRPKSGGLNDPLLGTT 71 Query: 65 VKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRI 124 DY ++CE C +++ HIEL P HI F+ ++ Sbjct: 72 --DYH-------------ILCETCHMDIKTCP---GHFAHIELGKPMFHIGFITTV---- 109 Query: 125 GLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGD---------E 175 L+ + V Y S + ++ +QI + L++ + Sbjct: 110 -------LKLLRCVCYACSKLFVDTLDPKF--KQIKRIKNPRLRLKKILEMRSSSSRCII 160 Query: 176 FDAKMGAEAIQALLKSMD--------------LEQECEQLREELNETNSETKRKKLTKRI 221 G +Q ++ E + L T K+++ Sbjct: 161 SSDGSGCGFVQPTYSKEGYNLYINQNQDENRIIDDESVDSKRLLAAEEVLTIFKRISHDD 220 Query: 222 KLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKR 281 + F P W I TV+P+ PP +RP V G + DL +++I N LK+ Sbjct: 221 MKILGFDPVKCNPSWFINTVIPIPPPAVRPYVQF-GSDRSEDDLTLKLQQIIKLNENLKK 279 Query: 282 LLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGS-NKRPLKSLADMIKGKQGRFRQ 340 + + +P+ I+ +LQ + L++N G + + + RP+KSL +KGK GR R Sbjct: 280 QIRIGSPEHIISEMSTVLQYHLITLINNDLPGLPQSRTRSNRPIKSLRARLKGKDGRIRG 339 Query: 341 NLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI------ 394 NL+GKRVD+S R+VIT P L + Q G+P +A+ L P + + L + Sbjct: 340 NLMGKRVDFSARTVITGDPNLAVDQVGVPYSIAMTLTYPEVVTPYNIEELKELVQRGPHE 399 Query: 395 KAAKKMVEREEAVV-------------------WDILDEVIREHPVLLNRAPTLHRLGIQ 435 + +E+ W + + + VL NR P+LH++ I Sbjct: 400 WPGATSIIQEDGTKVDLRFSNTSNNSNNILQYGWKVERHMKNDDLVLFNRQPSLHKMSIM 459 Query: 436 AFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPAN 495 ++ +L+ V + YNADFDGD+M +H+ + E + E + LMM I+SP Sbjct: 460 GHRVKILPYSTFRLNLSVTSPYNADFDGDEMNLHLAQSHETRSEIKNLMMVPRQIVSPQG 519 Query: 496 GEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEY 555 +P+I QD +LG++ +TR + + Y +G A ++ + Sbjct: 520 NKPVIGIVQDSLLGIFLLTRKSTFLTRDKFLQLLLCIP---YWNGNIPPPAILRPQPLWT 576 Query: 556 EK-------------------------------------DANGELVAKTSLKDTTVGRAI 578 K + + + + + + + Sbjct: 577 GKQIITVLLAFTTDLGEPIELNLMRDGSIVSIKQSNNSSNTDKDDSKEAIVNNPWISELD 636 Query: 579 LWMIVPKGLP-YSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGA 637 +I+ KG ++ + + + +++ + +G + T +F + G Sbjct: 637 NQVIIQKGEHICGVLTKKIAGSSSGSLIHILWNEIGPEKTGLFLTYTQMVVNTWLLEHGF 696 Query: 638 SVGIDDM----VIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRV 693 +VG D+ EK + ++ +V +I + Q G + + + A N + Sbjct: 697 TVGCQDIQPQNYTLEKIMNSLEGSKLQVQQIIRRAQKGKLDCQPGKSLIESFEAQVNQEL 756 Query: 694 SKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM------ 747 + A + E S N+I M G++GS I Q+ G Sbjct: 757 NSA-------RELSGTIATENLDSSKNNIVAMVQCGSKGSTINISQIMACVGQQNVEGKR 809 Query: 748 --------------AKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANS 793 G ++ ++ GL + F G R+G+ DTA KT+ + Sbjct: 810 IPFGFRDRSLPHFLKYDYGPESRGFVSNSYLSGLTPQEVFFHAMGGREGIIDTACKTSET 869 Query: 794 GYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVK--EPLRDRVL 840 GY+ RRL+ +D +V D + + + G D E + D+V+ Sbjct: 870 GYIQRRLIKAMEDCMVQYDRTVRNSNGDIIQFLYGEDGMAGEFIEDQVI 918 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 97/528 (18%), Positives = 186/528 (35%), Gaps = 87/528 (16%) Query: 848 VLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGH 907 V A++ TLL L + V + + G H + R LA Sbjct: 1057 VFDSIIAEVQKNATTLLGIHIRSSLASKKILEVDRLGPTAFEWILGEIEHQFYRSLAHS- 1115 Query: 908 IINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVV 967 GE +G IAAQSIGEP TQ+T+ TFH G S+ + + ++ ++ Sbjct: 1116 ----GEMVGTIAAQSIGEPATQMTLNTFHFAGVGSKNVT-----------LGVPRLRELI 1160 Query: 968 NSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVAN--WDPHTM 1025 N + + + L+ + + VL + + T+A+ +DP Sbjct: 1161 NVAKNVRTPTLTVYLESGIANDQEQAK------DVLTLLEHTMLQNITTIAHILYDPEQD 1214 Query: 1026 PVITEVSG--FVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDA 1083 I E + + D IT + L ++ K++ + +++ Sbjct: 1215 KTIVEADKSWVSDYYEFPDDADITSRLGTWLLRIQLNNKLVTDKKLSMKEIGDKI-LMEF 1273 Query: 1084 QGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVAD 1143 +++ TD + + I +E I D + + + IT G+ Sbjct: 1274 SKDELDCIWTDDNSDELVLRLRIKNIEPTNNIR--DNIHSSEENDSISPSITSGV----- 1326 Query: 1144 LFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDG--SDPYEEMIPKWRQLNVFEG 1201 E + E ++ E ++ K+ + ++M+ + + +G Sbjct: 1327 --EEHKFLEK-LMTECLSQITLRGINNIKKVYMKEEQVSRYDSVSQKMVRDNQWVLDTDG 1383 Query: 1202 ERVERG------DVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEV 1255 +E D ++ + G+ AV R ++ E++ V G +N +H+ + Sbjct: 1384 CNLEAVLCHTAIDSTRTISNDITEVFSVLGIEAVRRALLRELRTVISFDGSYVNYRHLAL 1443 Query: 1256 IVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLA 1315 + M + L+ IT+ + Sbjct: 1444 LCDNMTQ----------------------------------------KGHLMSITRHGIN 1463 Query: 1316 T--ESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGT 1361 + + SF+ET VL +AA+ G+ D L G+ ENV++G+L P GT Sbjct: 1464 RVDKGPLQKCSFEETVEVLMDAAMFGETDYLNGVSENVMLGQLAPYGT 1511 >UniRef50_A9VCM2 DNA-directed RNA polymerase n=3 Tax=Fungi/Metazoa group RepID=A9VCM2_MONBE Length = 1414 Score = 628 bits (1619), Expect = e-178, Method: Composition-based stats. Identities = 303/1551 (19%), Positives = 515/1551 (33%), Gaps = 369/1551 (23%) Query: 8 LKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKD 67 + ++ I+ L ++ S V E T P+R FGP+ Sbjct: 6 YRDDQTPKKISHIQFGLMDHYEMQRLSEVRVYSKEFY---TGLPDRK----PAPFGPLD- 57 Query: 68 YECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLL 127 + + + C C + + GHIEL P H+ F K+ S Sbjct: 58 ------RRLGAFDKSLDCATCSQNL---RKCEGHFGHIELELPVFHVGFFKATLS----C 104 Query: 128 LDMPLRDIERVLYFES------YVVIEGGMTNLERQQILTE------------------- 162 L + RV+ + + + R I+ E Sbjct: 105 LQRICKSCSRVMLSHKQATVFLRRLQDPNLERGPRAAIIKEVGDQCRKNAASCPHCSACN 164 Query: 163 ----EQYLDALEEFGDEFDAKMGA--EAIQAL-------LKSMDLEQECEQLREELNETN 209 L + F K EA L +K + + +++++ELN Sbjct: 165 GVVKRPKNSVLRIVHERFTKKNNRLREAHHQLFQEAASEVKDLSASLKADKVQDELNPLR 224 Query: 210 SETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLY 269 + + + + L +PE +ILT L V P G L Sbjct: 225 ALQLLRAVPDQDCPLLDMDPFCGRPEKLILTNLIVPP---------GGSGSNEDPLTTGL 275 Query: 270 RRVINRNNRLKRLLDLAAPDII-VRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLA 328 KR+ D I + LQ V + G K+ + Sbjct: 276 A--------AKRVEDAGGQKIERIMQTWEALQVHVALYFNGDLPGLPKDLKPKKAPRGFY 327 Query: 329 DMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELR 388 +KGKQGRFR NL GKRV+YSGR+VI+ P + + +P + L P + ++ Sbjct: 328 QRLKGKQGRFRGNLSGKRVNYSGRTVISPDPNASIDEVCVPYHVCKILTYPEMVNDYNIQ 387 Query: 389 GLATTIKAA------------------------KKMVEREEAVVWDILD-EVIREHPVLL 423 L ++ + E DI+ +I L Sbjct: 388 RLRAAVENGPDNYPGAVLLEKSRDKRTYDLAHCNRQKSARELAKGDIVRRHLIDGDYALF 447 Query: 424 NRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARAL 483 NR P+LHR+ I + + + VC YNADFDGD+M +HVP T EA+ EA L Sbjct: 448 NRQPSLHRMSIMCHRVKARPWRTFRFNECVCKPYNADFDGDEMNLHVPQTEEAKAEAALL 507 Query: 484 MMSTNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGM----------------- 525 + +T+N+ +P NGEP+I QD + G + ++ +D K + M Sbjct: 508 LRTTHNLCTPCNGEPLIAACQDFITGCFLISQKDTFFTKAKVMQMVCAFSDGSLKISLPV 567 Query: 526 --------VLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLK---DTTV 574 + TG + + R H +V +TE K + K D T+ Sbjct: 568 PAIVKPVAMWTGKQVFSMMMRPSKDDPH---QVDLTEKNKSFDKNYEKSEVKKLGRDLTI 624 Query: 575 GRAILW------MIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTG 628 G L +I L +++A ++ S + R + V ++ Sbjct: 625 GERSLCPEDGFVIIRSSRLLCGFLDKANVGESKSTIFYRLLRDYSAQAAVDGMLRMTKLT 684 Query: 629 FAYAARSGASVGIDDMVIP----EKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVID 684 Y G S+G++D+ P ++K +I A + + +++SG + Sbjct: 685 TRYLMERGFSIGLEDVTPPQELTDEKAVLIKTAFDKCSGYIAEYKSGRIECQPG------ 738 Query: 685 IWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMR 744 +A + + + +L + +N+ +MA G++GS + Q+ + Sbjct: 739 --QSAEETLESFIRKDLNQVREEAGSLCRKVLSPYNAPKIMAKCGSKGSPINMAQMIALV 796 Query: 745 GLM-----AKPDGS---------------IIETPITANFREGLNVLQYFISTHGARKGLA 784 G P+G + + + +F GL ++F T R+GL Sbjct: 797 GQQILNGSRVPNGFEDRPLPHFRRFAKVPMAKGFVANSFYTGLTPAEFFFHTMSGREGLV 856 Query: 785 DTALKTANSGYLTRRLVDVAQ------DLVVTE----------------------DDCGT 816 DTA+KTA +GY+ RRL+ + D V DDC Sbjct: 857 DTAVKTAETGYMQRRLMKALEDLVVHYDTTVRNSSGHMIQFCYGDDGLDPQGMETDDCAV 916 Query: 817 HEGIMMTPVIEGGD-----------VKEPLRDRVLGRVTAEDVLKPGTA---DILVPRNT 862 + V+ + +L D P D+ + Sbjct: 917 DLEHLFVHVLASDRDGPPPVTLQPAAVISTFESILKEQDLRDYDHPYCPLGLDVSADKEH 976 Query: 863 LLHEQWCDLLEENSVDAVKVRSVV--------------------------SCDTDFGVCA 896 Q LE+ + ++R + + + Sbjct: 977 FFLNQLRVFLEKRAQQLAEIRQRIGLAPALEAPAEDDPAKRHLVNNLMSVTREDMRIFVE 1036 Query: 897 HCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKG 956 + R ++ G A+G I AQSIGEPGTQ+T++TFH G A+ Sbjct: 1037 KALFK--FRRTVVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVAAMNVT---------- 1084 Query: 957 SIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGET 1016 + + +K ++N++ + +T + +ES+ A L T Sbjct: 1085 -LGVPRIKEIINAAKNI-----STPVITAKLENDREESFARQVKARLETL---------T 1129 Query: 1017 VANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRP 1076 + H V E G+VR ++ + I R+ E+T ++DS + K Sbjct: 1130 LGEVADHFDVVCNEDGGYVRVK--LNLKVIQRKHLEVTMN---TIIDSIAASRLTKIKHE 1184 Query: 1077 ALKI-VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDIT 1135 L + V + + A + + + I Sbjct: 1185 HLSVMSSEVFQAVPVCDSKTVANRVHALRHLANVLPNCVI-------------------- 1224 Query: 1136 GGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQ 1195 GLP + A+ P E I G T + G +I Sbjct: 1225 TGLPGIRRAIIAKDPNEGTFSIAIDG----------------TDLKGVMATPGVI----- 1263 Query: 1196 LNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEV 1255 G V+ V+ ++ + G+ A I+++VQ V G+ IN +H + Sbjct: 1264 -----GTTVDCNHVM--------ELEQTLGIEAARSIIMDQVQYVMSNYGIHINPRHTML 1310 Query: 1256 IVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLA 1315 + M K GE +LGIT+ +A Sbjct: 1311 MSDLMTFK-------------GE---------------------------VLGITRFGIA 1330 Query: 1316 --TESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 ES ASF++TT L +AA+ G D + G+ E +I+G + GTG Sbjct: 1331 KMKESVFMLASFEKTTDHLFDAALRGTTDSVDGVSECIILGVPMRIGTGLF 1381 >UniRef50_UPI00017927B1 PREDICTED: similar to AGAP004703-PA n=1 Tax=Acyrthosiphon pisum RepID=UPI00017927B1 Length = 1355 Score = 624 bits (1610), Expect = e-177, Method: Composition-based stats. Identities = 231/1107 (20%), Positives = 410/1107 (37%), Gaps = 164/1107 (14%) Query: 4 LLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETI----NYRTFKPERDGLFCA 59 + + + + I + +P I+ S + N + P G+ Sbjct: 2 VKEQYRDTDGSRIISKISFTVDNPQDIQRKSHLCINTRNLYAINNNNASRTPHPYGVLDH 61 Query: 60 RIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKS 119 ++ + + C C + +G I+L P H+ F S Sbjct: 62 KL---------------GVNQKDATCMTCNKGLNDCP---GHLGFIDLQLPVFHVGFFSS 103 Query: 120 LPSRIGLLLDMP------LRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEE-- 171 + + + + P L + +R+ ++ + +T R+++ E + Sbjct: 104 VITILQTICKNPFCAKVLLNEEDRMFFYTK--LRNKNLTYTMRKKVFKEVHAKAKKVQIC 161 Query: 172 -------------------FGDEFDAKMGAEAIQALLKSMDLEQECEQLREEL-NETNSE 211 + K G EA AL + +E E +R L NE + Sbjct: 162 PFCSDIVGQVKKNGILKISYDRYRYKKPGTEAESALNDVVKYNKEVESMRNYLFNENLNP 221 Query: 212 TKRKKLTKRIK----LLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDG-GRFATSDLN 266 + +L I +L + P W+++T + V P +RP D DL Sbjct: 222 QEVLRLLLSIPYEDIILLGMNPEVSNPGWLLMTRMLVPPNCIRPSAVSDIRSGTNEDDLT 281 Query: 267 DLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKS 326 V+ N+ + + A ++ + LQ +++ G + T K+ + Sbjct: 282 LKLSEVLFINDVIVKHKQSGAKPQLLHEDWEYLQLHCALYINSDLSGVSRTMMPKKIARG 341 Query: 327 LADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLE 386 +KGK GRFR NL GKRVD++ RSVI+ P LR+ + G+P +MA L P Sbjct: 342 CVQRLKGKHGRFRGNLSGKRVDFTARSVISPDPNLRIEEVGVPVRMAKILTYPQKVCPAN 401 Query: 387 LR------------------------GLATTIKAAKKMVEREEAVVWDILDEVI-REHPV 421 + L ++ + ++ + DI++ + V Sbjct: 402 IELMRKLVMNGPEIHPGANFVELQGSKLKKYLRFGNRPAIAKDLKIGDIVERHLSDGDIV 461 Query: 422 LLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEAR 481 L NR P+LHRL I ++E ++ + VC YNADFDGD+M +H+P T EA+ EA Sbjct: 462 LFNRQPSLHRLSIMCHRAKVLEHNTLRFNECVCTPYNADFDGDEMNLHLPQTEEARAEAA 521 Query: 482 ALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGL 541 LM++ +N+++P NG+ +I +QD + G Y +T + L Sbjct: 522 LLMINKSNLVTPRNGDILIAATQDFITGAYLLTHKNTFLN----QRDSSRLIGWLMSGDD 577 Query: 542 ASLH-ARVKVRITEYEKDANGELVAKTSLK----------------------DTTVGRAI 578 ++ + I + K G+ + ++ + + Sbjct: 578 INIDLTLPRPAILKPHKLWTGKQILSIIMRPSKKCLVKANLRCKGKSYTRDEEFCFKDSY 637 Query: 579 LWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGAS 638 +++ + L ++ LG + S + G ++ + G S Sbjct: 638 VYIKNSELLAGTMDKATLGSGSKSNIFYVLLADWGSDVCCKVMWRLTRLTSYFLMLRGFS 697 Query: 639 VGIDDMV----IPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVS 694 +GI D+ + + K+E++ A E S + N ++ + Sbjct: 698 IGIGDVTPSDDLLQSKNELVINGNALCEENIRLRNSKELKCQPGCNM--------DETLE 749 Query: 695 KAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMA-----K 749 ++ L + N +MA SG++GS I Q+ G A Sbjct: 750 ANILKQLSGIRDSVGKACLLELHFTNGPLVMALSGSKGSNINISQMIACVGQQALSGHRV 809 Query: 750 PDGSIIE---------------TPITANFREGLNVLQYFISTHGARKGLADTALKTANSG 794 PDG + +F GL ++F T G R+GL DTA+KTA +G Sbjct: 810 PDGFESRSLPHFKRFSKTPEAKGFVENSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETG 869 Query: 795 YLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLG-RVTAEDVLKPGT 853 Y+ RRLV +DL V D+ + + GGD +P G V + V T Sbjct: 870 YMQRRLVKSLEDLCVHYDNTVRNAFGDVIQFEFGGDSLDPTYTEGDGVPVDFKRVYFNVT 929 Query: 854 ADILVPRNTLLHEQWCDLLEEN-SVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKG 912 A+ T +L ++ +++ K++ + S C + +A +I G Sbjct: 930 ANYPC---TDESNNMAELRKKWLNLEVSKIQRITSTQL-IKFYVTCLTKYMA--AVIEPG 983 Query: 913 EAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGK 972 +G IAAQSIGEPGTQ+T++TFH G AS + + +K ++NSS Sbjct: 984 TPVGAIAAQSIGEPGTQMTLKTFHFAGVASMNITQG-----------VPRIKEIINSSKN 1032 Query: 973 LVITSRNTELKLIDEFGRTKESYKVPY 999 + L E + KE ++ Sbjct: 1033 ISTPIITAYL----ENDKDKEFARIVK 1055 Score = 89.4 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 43/212 (20%), Positives = 79/212 (37%), Gaps = 44/212 (20%) Query: 1155 ILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGP 1214 I ++ V + R ++ D + +++ + L G + Sbjct: 1145 IYSQNLQKVVIKGISAVSRAVIHEEDDNGEIRYKLLVEGDNLREVMATPGVIGKRCT--S 1202 Query: 1215 EAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDF 1274 + G+ A I++E+ V G+ I+ +H +I M + Sbjct: 1203 NNTFQVWNALGIEASRATIISEIDSVMGNHGISIDPRHPMLIADLMTSR----------- 1251 Query: 1275 LEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLAT--ESFISAASFQETTRVL 1332 GE LLGIT+ L+ ES ++ ASF++T+ L Sbjct: 1252 --GE---------------------------LLGITRFGLSKMKESVLNLASFEKTSDHL 1282 Query: 1333 TEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 +AA G+ D + G+ E++I+G I GTG+ Sbjct: 1283 FDAAYYGQTDTINGVSESIIMGIPINLGTGFF 1314 >UniRef50_B6KEC6 DNA-directed RNA polymerase n=5 Tax=Eukaryota RepID=B6KEC6_TOXGO Length = 1892 Score = 622 bits (1604), Expect = e-176, Method: Composition-based stats. Identities = 211/1014 (20%), Positives = 363/1014 (35%), Gaps = 181/1014 (17%) Query: 13 KTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLC 72 + D ++ + S + +R S EV E Y P+ +GL R+ DY Sbjct: 15 PLKRVDQLQFGVFSSEQLRKMSVCEVTTSEL--YEHGMPKANGLNDLRLG--TLDYR--- 67 Query: 73 GKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFL-------KSLPSRIG 125 C C ++V GH+ L P H FL + + G Sbjct: 68 ----------QQCRTCNMDVKNCP---GHFGHLNLVKPVYHYGFLGAVLRVLRCVCYACG 114 Query: 126 LLL--------------DMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEE 171 LL P R ++ VL + G L + Sbjct: 115 KLLVDRRDPKMQHILKIRSPSRRLKHVLDACAGRKRCEGYLPLPADGMPVP--------- 165 Query: 172 FGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKL--------TKRIKL 223 +E + G + + ++ REE +E +E R+ +RI Sbjct: 166 LAEEGEGGCGCVQPRYFKEGPNIMVLFPDNREEGDEDVTEDIRRIFAAEEAYAVLRRISE 225 Query: 224 ----LEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRL 279 + F P IL+ LP+ P +RP V G + DL ++ N L Sbjct: 226 EDLKMMGFDPERAHPASFILSTLPIPPLAVRPSVQY-GSARSEDDLTLKLVDIVKTNLSL 284 Query: 280 KRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAI-TGSNKRPLKSLADMIKGKQGRF 338 KR D + P +++ +LQ V L DN G + T K+P+KS+ +KGK+GR Sbjct: 285 KRQGD-SVPGAVLQEMVMLLQYHVTTLFDNDIPGMPVATTRGKKPIKSIRARLKGKEGRL 343 Query: 339 RQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIK--- 395 R NL+GKRVD+S R+VIT P L + G+PK +A+ L P L + L +K Sbjct: 344 RGNLMGKRVDFSARTVITGDPMLPIDTVGVPKSIAMTLTYPEFVTPLNIGQLRQLVKTGP 403 Query: 396 ---AAKKMVEREEAVVWD-----------------ILDEVIREHPVLLNRAPTLHRLGIQ 435 K V R++ +D + + VL NR P+LH++ I Sbjct: 404 FDWPGAKYVIRDDGSRFDLRHAKKGGEVVLEVGYRVERHMRDGDFVLFNRQPSLHKMSIM 463 Query: 436 AFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPAN 495 + ++ +L+ V + YNADFDGD+M +H+ + E + E + LM I+SP Sbjct: 464 GHQVKILPYSTFRLNLSVTSPYNADFDGDEMNLHLAQSEETRAEIKHLMKVPKQIVSPQG 523 Query: 496 GEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEY 555 +P++ QD +L + TR + MV + Y SG+ I Sbjct: 524 NKPVMGIVQDSLLAVSKFTRRDTFL-TKPMVYNLLLQIP--YWSGVVP-----PPAILHP 575 Query: 556 EKDANGELVAKTSL------------------------------KDTTVGRAILWMIVPK 585 G+ + L ++ + +I+ + Sbjct: 576 VPLWTGKQLFSLLLFFDSSVSGGNTKTRINMQRDVGAGLVDRKKENLFLSERDERVIIRQ 635 Query: 586 G-LPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDM 644 G L + + + A +++ + G + T F + + G +VG D+ Sbjct: 636 GELLAGKICKKIVGSASGSLIHLLWLEAGPERTKDFLSTLQKLTNYWLLHQGFTVGCKDI 695 Query: 645 VIPEKKHE----IISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDN 700 + E+ +E I+ +A+ EV ++ G + + + + + Sbjct: 696 IANEETNEKVRDILDQAKKEVDKLIRLAHRGRLESQPG--------KSLRESFEARVNKE 747 Query: 701 LQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSI------ 754 L + + E N+I M +G++GS I Q+ G I Sbjct: 748 LNSARERSGKVAAESLDESNNIMAMVLAGSKGSTINISQIMACVGQQNVEGKRIPFGFNE 807 Query: 755 --------------IETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRL 800 + ++ GL + F G R+G+ DTA KT+ +GY+ RRL Sbjct: 808 RSLPHFHKFDYSPQSRGFVENSYLSGLEPHELFFHAMGGREGIIDTACKTSETGYIQRRL 867 Query: 801 VDVAQDLVVTEDDCGTHEGIMMTPVIEGGDV------------KEPLRDRVLGRVTAEDV 848 + +D++V D + + + G D L + L R+ DV Sbjct: 868 MKAMEDVMVYYDRTVRNSICEVLQFLYGEDGMSGEFVEDQTVELMTLDNEKLKRLYRHDV 927 Query: 849 LKPGTADILVP---RNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCY 899 + + RN +L + E +A++ + +C H + Sbjct: 928 DQESYGKGWLSDELRNEILTDYELQQPLEEEFEAIR-------EDKNRLCRHIF 974 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 77/465 (16%), Positives = 161/465 (34%), Gaps = 73/465 (15%) Query: 904 ARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNV 963 + + GE +G IAAQSIGEP TQ+T+ TFH G S+ ++K ++ Sbjct: 1083 FHRALAHAGECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKEL----INVA 1138 Query: 964 KSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAG-GETVANWDP 1022 K V S + E+ + E + +++ L ++V + + + DP Sbjct: 1139 KQVKTPS---LTVYLQDEIAMDQERAKDVQTH-------LEHTTLDRVTVVSQVIYDPDP 1188 Query: 1023 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD 1082 + + + + D + + ++ K++ + + Sbjct: 1189 TDTIIPQDRQWVRDYYEFPDDDELPSNLGRWLLRIQMASKVMIDKKLTMKEIGEKIY-AE 1247 Query: 1083 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA 1142 ++ TD ++++ Q G+ + + D L ++ Sbjct: 1248 FPNEELDCIWTDDN-----SDDLVLRIRLKQQPGEGEDEDKDEDDVAEAGD--RFLQKLM 1300 Query: 1143 -DLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEG 1201 + ++++ + R + + + + N+ + Sbjct: 1301 VQCLAGITLRGITNISKVY-------MREEARTIYNNQLGKFERTNNWVLDTDGCNLEDV 1353 Query: 1202 ERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQML 1261 + D +I + G+ AV R ++ E++ V G +N +H+ ++ M Sbjct: 1354 LPIPMVDDTRTTSNDMTEIFHVLGIEAVRRALLRELRAVISFDGSYVNYRHLAILCDTMT 1413 Query: 1262 RKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLAT--ESF 1319 + L+ IT+ + + Sbjct: 1414 Q----------------------------------------KGYLMSITRHGINRIDKGP 1433 Query: 1320 ISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 + SF+ET +L EAAV + D LRG+ EN+++G+L P GTGY Sbjct: 1434 LMKCSFEETVEILMEAAVFAEADHLRGVTENIMMGQLCPLGTGYF 1478 >UniRef50_B8BQ02 DNA-directed RNA polymerase n=1 Tax=Thalassiosira pseudonana CCMP1335 RepID=B8BQ02_THAPS Length = 1627 Score = 620 bits (1598), Expect = e-175, Method: Composition-based stats. Identities = 209/911 (22%), Positives = 363/911 (39%), Gaps = 134/911 (14%) Query: 6 KFLKAQTKTEEFDAIKIALASPDMIRSWSFGE------------VKKPETINYRTFKPER 53 F + + ++ + +P+ +R +S + V + ET Y + +P Sbjct: 23 NFGHSSARLRRIKKLQFGIINPEELRQYSVTQAITVNGRKIPAGVTRYET--YMSGQPVY 80 Query: 54 DGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAH 113 G+ R+ G + D K GHIELA P H Sbjct: 81 GGVNDPRL-GDLHD----------------------------KSDPGYFGHIELARPVYH 111 Query: 114 IWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLER-QQILTEEQYLDALEEF 172 F+ D+ L+ + V + S + +E +R +QI ++ LDA+ Sbjct: 112 QGFI-----------DVTLKALRCVCFHCSRITMEDTEYKFQRARQIRNRKRRLDAMHAL 160 Query: 173 GDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQ--- 229 Q + L E E E S +K+ K ++ F + Sbjct: 161 IRPKKKCDHCNGYQPKYTKVGLHVEIEYADEMERVPGSSGDKKQFMSAQKAVDIFKKMRD 220 Query: 230 ----------SGNKPEWMILTVLPVLPPDLRPLVPLDGG-RFATSDLNDLYRRVINRNNR 278 + +PEWM ++V+PV P +RP V + GG + + DL ++ N Sbjct: 221 DEVKALGLDVTWARPEWMCVSVMPVPPLHVRPSVVMGGGAQSSEDDLTHQLVNIVKSNIA 280 Query: 279 LKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRA-ITGSNKRPLKSLADMIKGKQGR 337 LK + P+IIV ++ LQ V A ++N RG IT + RPLK+LA +K K+GR Sbjct: 281 LKTAIQNGEPNIIVEQFEQALQHNVAAFVNNEMRGMPQITQRSGRPLKTLAQRLKAKEGR 340 Query: 338 FRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI--- 394 R NL+GKRVD+S R+VIT P L +HQ G+P+ +A+ L P ++ L+ + Sbjct: 341 IRGNLMGKRVDFSARTVITADPNLGIHQVGVPRSVAMNLTVPTRVTPFNIQELSALVANG 400 Query: 395 ---KAAKKMVEREEAVV-----------------WDILDEVIREHPVLLNRAPTLHRLGI 434 K + R + + W + + VL NR P+LH++ I Sbjct: 401 PTEHPGAKHIIRSDGLRIDLRYVKNKSDLLLANGWIVERHLRDGDIVLFNRQPSLHKMSI 460 Query: 435 QAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPA 494 +++ +L+ + YNADFDGD+M +HVP +L A+ EA +M S I+S Sbjct: 461 MGHMAKVLDWSTFRLNLSCTSPYNADFDGDEMNLHVPQSLPARAEAELMMHSPRVIVSGQ 520 Query: 495 NGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMV--------LTGPKEAERLYRSGLASLHA 546 + P++ QD +L + MT+ V K + M+ G +YR Sbjct: 521 SNRPVMGIVQDSLLAVQKMTKRDVFVKKDLMMNILMWVEDWDGRIPPPAIYRPEELWTGK 580 Query: 547 RVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLN 606 ++ + + + + G+ +T L ++ L +++ + +++ Sbjct: 581 QI-MSMILPKINLTGKANNGGPGPNTFNAYDNLVRVMEGELIEGTIDKKTIGSGMGGLIH 639 Query: 607 TCYRILGLKPTVIFADQIMYTGFAYAARSGASVG----IDDMVIPEKKHEIISEAEAEVA 662 T + +G + T F +Q + +S S+G I D E+ I++A+ +V Sbjct: 640 TAWLDVGHEDTARFMNQTQVVTNYWVLQSSFSIGVCDTIADFATMEQIASTINKAKLQVL 699 Query: 663 EIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSI 722 ++ Q Q G + +I+ + ++V D+ + D NS+ Sbjct: 700 DLVRQGQRGELETQPG-RTMIESFEQFVNKVLNTARDHAGKSAQASLD-------ETNSV 751 Query: 723 YMMADSGARGSAAQIRQLAGMRGLM--------------------AKPDGSIIETPITAN 762 M +G++GS I Q+ G G + + Sbjct: 752 KAMVTAGSKGSFINISQIIACVGQQNVEGNRIPYGFKRRTLPHFSKDDLGPESRGFVENS 811 Query: 763 FREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMM 822 + GL ++F G R+GL DTA KTA +GY+ RRLV + ++ D G + Sbjct: 812 YLSGLTPQEFFFHAMGGREGLIDTACKTAETGYIQRRLVKAMETVMARYDGTLRTSGGQI 871 Query: 823 TPVIEGGDVKE 833 + G D + Sbjct: 872 VQFLYGEDGMD 882 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 82/470 (17%), Positives = 168/470 (35%), Gaps = 79/470 (16%) Query: 904 ARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNV 963 ++ GE GV+AAQSIGEP TQ+T+ TFH G +++ + + + Sbjct: 1072 FHHAKVSPGEMAGVLAAQSIGEPATQMTLNTFHYAGVSAKNVT-----------LGVPRL 1120 Query: 964 KSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPH 1023 K ++N + + + + L + + K+ + + + E + DP Sbjct: 1121 KEIINVAK--TVKTPGLTIYLQNHVSGDADVAKLVHSMIEYTVLTDLTKLTEIYYDPDPV 1178 Query: 1024 TMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDA 1083 V + + +M + + + + + K A +I + Sbjct: 1179 NTIVAKDREFVKEYYEMGEETEEDLRRLSPW-VLRIELNQVVMVDKKIKMNEIAAEIANE 1237 Query: 1084 QGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQIS----SGDTLARIPQESGGTKDITGGLP 1139 G+D+ + +D A + I + D + G+ + G +D Sbjct: 1238 YGSDLNVLVSDDNADDLVAR--IRIVNDLPMVQGMDEDGNPIMTDDDVELGQED------ 1289 Query: 1140 RVADLFEARRPKEPAILAEISGI--VSFGKETKGKRRLVITPVDGSDPYEEMIPKW---R 1194 D+F R K ++ G+ V G ++ V G +E + + Sbjct: 1290 ---DVFLKRLEKNMLHTLKLRGVDDVKKVFMRGGAKKTVWDDEKGFGITDEWVLETDGTN 1346 Query: 1195 QLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIE 1254 ++V + V+ IS+ ++ + G+ V I++E+++V G +N +H+ Sbjct: 1347 LMSVLGIDYVDATRTISNDIV---EVFMVLGIEGVRAAILSELRNVISFDGSYVNYRHLA 1403 Query: 1255 VIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASL 1314 +V M L+ + + + Sbjct: 1404 CLVDVMTM----------------------------------------HGHLMAVDRHGI 1423 Query: 1315 A--TESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362 + SF+ET +L +AA + + LRG+ EN+++G+L GTG Sbjct: 1424 NRVESGPLLRCSFEETVDMLNDAACFAEEEVLRGVTENIMMGQLARVGTG 1473 >UniRef50_P09846 DNA-directed RNA polymerase subunit A' n=4 Tax=Methanobacteriaceae RepID=RPOA1_METTW Length = 865 Score = 618 bits (1594), Expect = e-175, Method: Composition-based stats. Identities = 213/912 (23%), Positives = 373/912 (40%), Gaps = 137/912 (15%) Query: 14 TEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCG 73 ++ I L SP+ IR S ++ P+T + + P + L R+ Sbjct: 5 LKKISQINFGLMSPEDIRKMSVAQIVTPDTYDEDGY-PIENELMDPRL------------ 51 Query: 74 KYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLR 133 + + C CG + + G I LA P H+ F ++ + + R Sbjct: 52 ---GVIGSSLRCRSCGAKGGECP---GHFGSINLARPVIHVGFADTIHKILSSI----CR 101 Query: 134 DIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMD 193 R+L E+ + RQ+IL + ++L E + AEA + + Sbjct: 102 KCSRILLTETEI-------QDYRQRILEAMEREESLTPIIKE----IYAEARRDRCPHCE 150 Query: 194 LEQECEQLRE---------ELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPV 244 EQE +L + +L + + +++T LL +PEWM+LTVLPV Sbjct: 151 EEQEEIKLDKPVSIVEGDYKLTPSEVRERLERITDNDSLLLGVNPEVARPEWMVLTVLPV 210 Query: 245 LPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVD 304 P +RP + L+ G + DL ++ N RLK ++ AP +IV + +LQ V Sbjct: 211 PPVTVRPSITLETGERSEDDLTHKLVDILRINQRLKENMEAGAPQLIVEDLWELLQYHVT 270 Query: 305 ALLDNGRRG-RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRL 363 DN G + RPLK+LA +KGK+GRFR NL GKRV++S R+V++ P + + Sbjct: 271 TYFDNEASGVPPARHRSGRPLKTLAQRLKGKEGRFRSNLSGKRVNFSARTVVSPDPNVSV 330 Query: 364 HQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVV--------------- 408 ++ G+P+ +A E+ P + + + I+ + V+ Sbjct: 331 NEVGVPELIAKEVTVPVYVTEWNIDRMKEHIENGPDVHPGANYVIRPDGRKIRAYNETKD 390 Query: 409 ---------WDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNA 459 + + + VL NR P+LHR+ + A E ++ K +L+ VC YNA Sbjct: 391 VVLENLKPGYIVERHLKDGDIVLFNRQPSLHRMSMMAHEVRVLPYKTFRLNLCVCPPYNA 450 Query: 460 DFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLY-YMTRDCV 518 DFDGD+M +HV T E++ EA+ LM ++ILSP +D+ G+Y ++++ Sbjct: 451 DFDGDEMNMHVFQTEESRAEAKTLMRVQDHILSPRF--------RDLSSGVYTTISQEHT 502 Query: 519 NAKGEGMVL-----TGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTT 573 +++G+ + P+E ++ D N +A+ K Sbjct: 503 SSQGKRLFSVRSRPPDPQEGRAPPPDREGREWTVKEIFSMVLPDDLNMVYLAEICRKCDE 562 Query: 574 V----GRAILWMIVPKG-LPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTG 628 ++++ G L ++++ K+L+ + G F D Sbjct: 563 CLEMDWENDAYVVIENGQLITGVIDEKAYGAFAGKILDQIVKEYGSDAAKEFLDSATKLA 622 Query: 629 FAYAARSGASVGIDDMVIPEKKHEIIS----EAEAEVAEIQEQFQSGLVTAGER------ 678 A +G + +D IPE+ E I AEA V ++ E +++G + Sbjct: 623 IAGIMHAGFTTSTNDEEIPEEAKERIEAHLRNAEARVDQLIEAYENGELEPLPGRSLEET 682 Query: 679 -YNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQI 737 K++ + A D+ + + N +MA +GARG+ + Sbjct: 683 LEMKIMQVLGEAKDKSGEIAESYFDMDE--------------NHAVIMALTGARGAMLNL 728 Query: 738 RQLAGMRGLMAKPDGSI--------------------IETPITANFREGLNVLQYFISTH 777 Q+ G + G I + ++++E +L++ Sbjct: 729 TQITACVGQQSVHGGRITRGYDNRTLPHFKKGELGAKSRGFVHSSYKEDSILLEF----M 784 Query: 778 GARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRD 837 G R+GL DTA++TA SGY+ RRLV+ QDL V E+ ++ G D +P + Sbjct: 785 GGREGLVDTAIRTAQSGYMQRRLVNALQDLTVDENGRVVDNRGVIIQTRFGEDGVDPAKS 844 Query: 838 RVLGRVTAEDVL 849 G++ D L Sbjct: 845 D-YGKIVDLDKL 855 >UniRef50_D0NAG7 DNA-directed RNA polymerase n=1 Tax=Phytophthora infestans T30-4 RepID=D0NAG7_PHYIN Length = 1534 Score = 615 bits (1587), Expect = e-174, Method: Composition-based stats. Identities = 195/943 (20%), Positives = 358/943 (37%), Gaps = 135/943 (14%) Query: 4 LLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFG 63 + + + + + + L S + S V+ + +T +P+ +G+ R+ Sbjct: 17 VKQLVLENDRPAKISHLNFGLLSDVDMMRMSELRVQSKDLFKVQTREPQGNGVLDKRL-- 74 Query: 64 PVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSR 123 + ++ CE C +++ G+I+L P HI + K+ Sbjct: 75 -------------GVSNKKDTCETCHLKLADC---VGHFGYIKLELPVFHIGYFKA---- 114 Query: 124 IGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAE 183 I +L + RVL + + + +L + + + Sbjct: 115 ITEILQNICKCCSRVLLPPTERELFLRRMRDPKADVLRLVGLRKKIATLCKKTVKCPHCD 174 Query: 184 AIQALLKSM-----DLEQECEQLR-------------------------------EELNE 207 AI ++ + L E + + E+L+ Sbjct: 175 AINGTVRKITSTTLKLVHEKYRAKATHDLRNVFVAQFAEAQANNPEIGAHLPKAQEDLSP 234 Query: 208 TNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGR-FATSDLN 266 + K++ + L G +PE ++L + V P +RP V +DGG D+ Sbjct: 235 LVVQQLFKEIPDQDCELLWVDADGGRPEKLLLNSVLVPPVCIRPSVAMDGGTGSNEDDIT 294 Query: 267 DLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKS 326 + ++ N L+ L A +V + LQ V L++ G K ++ Sbjct: 295 VKLQEIVQVNFALRAALQKGASLKMVMEDWDFLQIQVAQLMNGDTPGLVKPPGAKTGIRG 354 Query: 327 LADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLE 386 L +KGKQGRFR NL GKRVD+SGR+VI+ P LR+ Q G+P+ +A + P + Sbjct: 355 LCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDQVGVPEHVAKTMTYPEKVTRYN 414 Query: 387 LRGLATT------IKAAKKMVE------------------REEAVVWDILDEVIR-EHPV 421 + L + ++ +E + DI++ + V Sbjct: 415 IEKLRKCVVNGPHVHPGANVIRIEGQKFTKNLLYGDRASLADELKIGDIVERHMEDGDIV 474 Query: 422 LLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEAR 481 L NR P+LH++ I + ++ + + + VC+ YNADFDGD+M +H+P T EA+ EA Sbjct: 475 LFNRQPSLHKMSIMSHRVKVMPWRTFRFNECVCSPYNADFDGDEMNMHLPQTEEARTEAI 534 Query: 482 ALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGM-----VLTGPKEAERL 536 LM N+++P NGEP++ +QD + Y +T+ + E +++ E L Sbjct: 535 TLMGVEQNLITPRNGEPLVAATQDFLTASYLLTQKNIFFNREQFCQVISIMSDANEHIEL 594 Query: 537 YRSGL---ASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPY---- 589 + L +V + +A +++A LK+ M G Sbjct: 595 PPPAIVLPVRLWTGKQVISLLVKPNAQTKVLANLELKERNYTSNKF-MCWKDGYVCFRNS 653 Query: 590 SIVNQALGKKAIS-----KMLNTCYRILGLKPTVIFADQIMYTGFAYAARS-GASVGIDD 643 ++ LGKK + + R G +++ + G S+GIDD Sbjct: 654 ELICGNLGKKTLGDGSKQGLFYVLIRDHGSHEAARCMNRLAKLCARWLGNFKGFSIGIDD 713 Query: 644 MV----IPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMD 699 + + ++K +++ E+++ G ++ N + + + N + K Sbjct: 714 VTPSEELSKEKQKLLQAGYDAANNSIEEYRRGKLSLKPGCNAIQSLESELNGLLGKLRET 773 Query: 700 NLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMA-----KPDGSI 754 N+ +MA+ G++GSA I Q+ G + P+G + Sbjct: 774 --------AGAECMRTLPFHNNPRIMAECGSKGSALNISQMMACVGQQSVGGKRVPEGFV 825 Query: 755 ---------------IETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRR 799 + + +F GL ++F T G R+GL DTA+KTA +GY+ RR Sbjct: 826 NRTLPHFLPHALHASAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMARR 885 Query: 800 LVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGR 842 L+ +DL D + + G D P R Sbjct: 886 LMKALEDLSCQYDQTVRNSEGSVVQFTYGDDGLNPAYMEGDDR 928 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 93/458 (20%), Positives = 161/458 (35%), Gaps = 107/458 (23%) Query: 909 INKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVN 968 + GEA+G + AQSI EPGTQ+T++TFH G AS + + +K ++N Sbjct: 1161 MEPGEAVGAVGAQSISEPGTQMTLKTFHFAGVASMNVT-----------LGVPRLKEIIN 1209 Query: 969 SSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVI 1028 +S K++ T T + + S ++ G + T+ H V Sbjct: 1210 AS-KIISTPIITAALVCKTD---ERSARIVKGRI----------EKTTLGEIAVHIKEVF 1255 Query: 1029 TEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDV 1088 Q +LT + L + +A I++A G Sbjct: 1256 AR------------DQAYLSVKLDLTAIEQLHLNITARSVRNS--------ILNAVGVGP 1295 Query: 1089 LIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEAR 1148 + Q+ L + ++ LA + + T G Sbjct: 1296 RAVLRLLKEQHVL-----LNARCPDKLR---LLAPPNYKGAKGE--TRGAYFALQ----- 1340 Query: 1149 RPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGD 1208 A+ AE+ G++ G T + + V S + + + E + D Sbjct: 1341 -----ALKAELPGVIVQGIPTVNRAVINYEEVQDSSAAKSLHLLVEGYGLAEVMGIPGVD 1395 Query: 1209 VISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVN 1268 + ++ + G+ A I +EV + G+ I+ +H+ ++ M K Sbjct: 1396 GLHTTSNHIIEVEKTLGIEAARELISSEVNYIMSAYGIGIDRRHLMLLSDIMTFK----- 1450 Query: 1269 AGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLAT--ESFISAASFQ 1326 GE +LGIT+ +A ES + ASF+ Sbjct: 1451 --------GE---------------------------VLGITRFGIAKMKESVLMLASFE 1475 Query: 1327 ETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 +TT L +AAV + D + G+ E +I+G IP GTG Sbjct: 1476 KTTDHLFDAAVHSRTDAIVGVSECIIMGIPIPLGTGIF 1513 >UniRef50_Q9TL05 DNA-directed RNA polymerase subunit beta' n=1 Tax=Nephroselmis olivacea RepID=RPOC1_NEPOL Length = 863 Score = 614 bits (1584), Expect = e-174, Method: Composition-based stats. Identities = 302/689 (43%), Positives = 404/689 (58%), Gaps = 91/689 (13%) Query: 13 KTEEFDAIKIALASPDMIRSW---------SFGEVKKPETINYRTFKPERDGLFCARIFG 63 T + +K+ +ASP IRSW G + K ETINYRT+KPE DGLFC R FG Sbjct: 93 STRDLRFLKLRIASPTRIRSWGTHKLPNGKQVGRITKAETINYRTYKPEMDGLFCERAFG 152 Query: 64 PVKDYECLCGKYKRLKHRGV------ICEKCGVEVTQTKVRRERMGHIELASPTAHIWFL 117 PVKD+EC CG+ K + +C CGVE+ +K+RR RMG+IEL P HIW+L Sbjct: 153 PVKDWECHCGRTKGQERNKDGIPIPRVCTHCGVELRDSKIRRHRMGYIELVYPVVHIWYL 212 Query: 118 KSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGM--------------------TNLERQ 157 KS+PS +G+LLD P R++E + Y +Y + M E Sbjct: 213 KSIPSYLGVLLDKPRRELEAITYCTNYASSQDSMAFSASLLFPTTGSFRQSKDSMKWEYL 272 Query: 158 QILTEEQYL-------DALEEFGDEFDAK----------------MGAEAIQALLKSMDL 194 E YL AL +G +GA+AI L++++L Sbjct: 273 NWFHIETYLGLKEATNSALVHYGKRIQDSPIEVGLPLSEDPRQFSIGAQAIACQLRALNL 332 Query: 195 EQECEQLREELN------------ETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVL 242 L +L E +R KL +R++L+ F+Q+ +PEWM++ L Sbjct: 333 RSVSRLLSRDLYIIDARETRFGALEEEEMKRRSKLIRRLQLIHYFMQTKAQPEWMVIKAL 392 Query: 243 PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEA 302 PVLPPDLRP+V L+GGRFAT+DLNDLYRRV+NRNNR +L + AP+ ++R+EKR+LQEA Sbjct: 393 PVLPPDLRPIVQLEGGRFATTDLNDLYRRVLNRNNRFMKLHKMVAPETLIRSEKRLLQEA 452 Query: 303 VDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLR 362 VD L DNG+RG+ + S+ RPLKSLAD +KGKQGRFRQNLLGKRVDYSGRSVI VGP LR Sbjct: 453 VDGLFDNGKRGKPVLNSSNRPLKSLADALKGKQGRFRQNLLGKRVDYSGRSVIVVGPKLR 512 Query: 363 LHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVERE-----------EAVVWDI 411 LHQCGLPK+MALELF+P + L R +A I+ AKK++ +AVVWD Sbjct: 513 LHQCGLPKEMALELFQPLVIRLLLKRKVAPNIRYAKKLMHHAVARGPENPTIIDAVVWDT 572 Query: 412 LDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVP 471 L V+ +P+LLNRAPTLHRLGIQAFEPVLI G+AIQLHPLVC +NADFDGDQM VH+P Sbjct: 573 LAAVVEGYPILLNRAPTLHRLGIQAFEPVLINGRAIQLHPLVCTGFNADFDGDQMGVHIP 632 Query: 472 LTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKG-EGMVLTGP 530 L+ EA+ EA+ LM++++N+LSPA G+PI+VPSQD+VLG YY+T + + EG+ +G Sbjct: 633 LSAEARAEAKLLMLASHNLLSPATGQPIVVPSQDMVLGWYYLTTENPWIESTEGLYFSGL 692 Query: 531 KEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPK----- 585 + E Y G LH+ + VR + + G+ L+ W I + Sbjct: 693 SDVEHAYHQGQIHLHSIIWVRWGGESEGSLGDEFEDNPLEIRIDANGHSWHIYSQYQLRY 752 Query: 586 ----GLPYSIVNQALGKKAISKMLNTCYR 610 L + G+ +++++ Sbjct: 753 DDEGDLISQFIRTTTGRVVFNQLVHRHIE 781 >UniRef50_Q9HM79 DNA-directed RNA polymerase subunit A' n=16 Tax=Euryarchaeota RepID=RPOA1_HALSA Length = 971 Score = 614 bits (1583), Expect = e-173, Method: Composition-based stats. Identities = 230/957 (24%), Positives = 357/957 (37%), Gaps = 181/957 (18%) Query: 14 TEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCG 73 +E I L P+ R S +V +T + F P GL R+ Sbjct: 7 PKEIGEISFGLMDPEEYRDMSATKVITADTYDDDGF-PIDMGLMDPRL------------ 53 Query: 74 KYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWF-------LKSLPSRIGL 126 + G+ C+ CG GHIELA+P H+ F L+ Sbjct: 54 ---GVIDPGLECKTCGQRSGGCN---GHFGHIELAAPVIHVGFSKLIRRLLRGTCRECAS 107 Query: 127 LL------------------------------------DMPLRDIERVLYFESYVVIEGG 150 LL V Y V E Sbjct: 108 LLLTEEEKDEYRENLDRTRSLRQDVSDVMTAAIREARKKDHCPHCGEVQYD---VKHEKP 164 Query: 151 MTNLERQQIL---TEEQYLDALEEFGDEFDAKMG----AEAIQALLKSMD--LEQECEQL 201 T E QQ+L E+ +++ DE DA + AE + ++ L E Sbjct: 165 TTYYEVQQVLASDYSERIAASMQPDEDEDDAGVSPQELAEQTDIDISRINEILSGEFRPR 224 Query: 202 REE-------------------LNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVL 242 RE+ L ++ + + ++PEWMILTVL Sbjct: 225 REDREAIETAIGADLTTEDMNKLMPSDIRDWFEDIPGEDLEALGVNSDRSRPEWMILTVL 284 Query: 243 PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEA 302 PV P RP + LD G+ + DL +I N R + AP +I+ + +LQ Sbjct: 285 PVPPVTARPSITLDNGQRSEDDLTHKLVDIIRINQRFMENREAGAPQLIIEDLWELLQYH 344 Query: 303 VDALLDNGRRGRAI-TGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYL 361 V +DN G + RPLK+L+ +KGK+GRFR +L GKRV++S R+VI+ P L Sbjct: 345 VTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPDPTL 404 Query: 362 RLHQCGLPKKMALELFKPFIYGKLELRGLATTIK------AAKKMVEREEAVV------- 408 L++ G+P ++A E+ + + + L ++ V R + Sbjct: 405 SLNEVGVPDRVATEMTQTMVVNEQNLERARRYVRNGPEGHPGANYVTRPDGRRVRVTEKV 464 Query: 409 -----------WDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAY 457 W++ +I ++ NR P+LHR+ I A E V++ K +L+ +VC Y Sbjct: 465 CEELAERVEPGWEVQRHLIDGDIIIFNRQPSLHRMSIMAHEVVVMPYKTFRLNTVVCPPY 524 Query: 458 NADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDC 517 NADFDGD+M +H EA+ EAR LM ILSP GE II QD + G Y +T D Sbjct: 525 NADFDGDEMNMHALQNEEARAEARVLMRVQEQILSPRFGENIIGAIQDHISGTYLLTNDN 584 Query: 518 VNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKD------ 571 +A L R + ++ G + L D Sbjct: 585 PRFNE--------TQASDLLRQTRIDELPAAAGTDEDGDQYWTGHQIFSELLPDDLSLEF 636 Query: 572 -TTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFA 630 T G + +I L + + S++++T ++ G IF +++ Sbjct: 637 TGTTGDTV--VIEDGQLLEGTIADDEVGEYGSEIVDTITKVHGNTRARIFINEVASLAMR 694 Query: 631 YAARSGASVGIDDMVIPEKKHEIISE----AEAEVAEIQEQFQSGLVTAGER-------Y 679 G S+GIDD + + E I E A V E+ E +++G + + Sbjct: 695 SIMHFGFSIGIDDETVSTEARERIDEAIQSAYDRVQELIETYENGDLESLPGRTVDETLE 754 Query: 680 NKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQ 739 K++ A D +N + N +MA+SGARGS + Q Sbjct: 755 MKIMQTLGKARDSAGDVAEENFDED---------------NPAVVMANSGARGSMLNLTQ 799 Query: 740 LAGMRGLMAKPDGSI--------------------IETPITANFREGLNVLQYFISTHGA 779 +AG G A I + ++ GL ++F G Sbjct: 800 MAGCVGQQAVRGERINRGYEDRTLSHFAPNDLSSEAHGFVENSYTSGLTPKEFFFHAMGG 859 Query: 780 RKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLR 836 R+GL DTA++T+ SGYL RRL++ +L D + G D P++ Sbjct: 860 REGLVDTAVRTSKSGYLQRRLINALSELETQYDGTVRDTSDTIVQFEFGEDGTSPVQ 916 >UniRef50_C4VAM1 DNA-directed RNA polymerase n=1 Tax=Nosema ceranae BRL01 RepID=C4VAM1_NOSCE Length = 1612 Score = 610 bits (1573), Expect = e-172, Method: Composition-based stats. Identities = 197/948 (20%), Positives = 355/948 (37%), Gaps = 117/948 (12%) Query: 15 EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74 + +I+ L SP+ IR S +V PET+ P+ GL ++ Sbjct: 8 KRITSIQFGLFSPEEIRKASVVQVIHPETM--ENGFPKPGGLIDLKMGTT---------- 55 Query: 75 YKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRD 134 R +C C + GHIEL P H+ ++ + + Sbjct: 56 -----ERAFLCSSCEKDNFSCP---GHFGHIELTKPMFHVGYMSKI-----------KKI 96 Query: 135 IERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDL 194 +E V Y+ S + I+ + + + E E G Q ++K + Sbjct: 97 LECVCYYCSKIKIDKKHLKKDLNFVWNSCKTKSVCEGELTE-AGFSGCGNKQPVIKKEGM 155 Query: 195 EQECEQLREE-------LNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPP 247 EE LN KK++ F +KP+W+++TVL V PP Sbjct: 156 GLVAFMKGEEDSDGKVILNGERVHNILKKISDEDSTYLGFDTKYSKPDWLVITVLLVPPP 215 Query: 248 DLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALL 307 +RP + ++G A DL ++ N LK+ AP ++R+ +++LQ + ++ Sbjct: 216 SVRPSIVMEGMLRAEDDLTHKLADIVKANTYLKKYELEGAPGHVIRDYEQLLQFHIATMI 275 Query: 308 DNGRRGRA-ITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQC 366 DN G+ + RP+KS++ +KGK+GR R NL+GKRVD+S RSVIT + L + Sbjct: 276 DNDLSGQPQALQKSGRPIKSISARLKGKEGRVRGNLMGKRVDFSARSVITPDANISLEEV 335 Query: 367 GLPKKMALELFKPFIYGKLELRGLATTI------KAAKKMVEREEAVVWD---------- 410 G+P ++A P + L + V R + D Sbjct: 336 GVPLEIAKIHTFPETITPYNIERLTRLVSNGPNEYPGANYVIRSDGQRIDLNFNRGDIKL 395 Query: 411 -----ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQ 465 + + VL NR P+LH++ + ++EGK +L+ + YNADFDGD+ Sbjct: 396 EEGYIVERHMQNGDVVLFNRQPSLHKMSMMGHFVRVMEGKTFRLNLSCTSPYNADFDGDE 455 Query: 466 MAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEG 524 M +H+P + + E L + + +LSP + P++ QD + L T RD K E Sbjct: 456 MNLHMPQSYNTKAELEELCLVSKQVLSPQSNRPVMGIVQDSLTSLRLFTLRDTFFDKRET 515 Query: 525 MVLTGPKEAERLYRSGLASLHARVKVRITEY------EKDANGELVAKTSLKDTTVG--- 575 M L + +H + + Y +K G+ + L + Sbjct: 516 MQLLYSINLSKYENFNNEDMHKTSIMDLLNYPTISYPKKLWTGKQIFSYILPNIVYSAVS 575 Query: 576 -----------RAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQI 624 + + +I L I+++ +++ K F D Sbjct: 576 NEHDENDLENLKDTVVIIRNGELLSGIIDKKSVGTTQGGLIHIIANDFSHKRITSFFDDT 635 Query: 625 MYTGFAYAAR-SGASVGIDDMVIPEKK----HEIISEAEAEVAEIQEQFQSGLVTAGERY 679 + + S+GI D + ++ I A+ +V ++ E+ Q + Sbjct: 636 QKIMNKFITFINAFSIGIGDAIANKETMVQVQSSIENAKYQVEKLIERAQRNKLERLPGM 695 Query: 680 NKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQ 739 + + N ++K I+ + N++ M +G++GS I Q Sbjct: 696 SMKESFESQVNYILNK--------PRDISGTSASKSLNFCNNMRTMVLAGSKGSFINISQ 747 Query: 740 LAGMRGLMAKPDGSI--------------------IETPITANFREGLNVLQYFISTHGA 779 + G I + ++ +GL +++ G Sbjct: 748 VTACLGQQNVEGKRIPFGFNYRSLPHFSKGDYSGKSRGFVENSYVKGLAPEEFYFHAMGG 807 Query: 780 RKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRV 839 R+GL DTA+KTA +GY+ RRLV +D V D + G D + Sbjct: 808 REGLIDTAIKTAETGYIQRRLVKAMEDATVGLDRSVRGANGFIYQYEYGEDGFDATYLE- 866 Query: 840 LGRVTAEDVLKPGTADILVPRNTLL-HEQWCDLLEENSVDAVKVRSVV 886 + ++ + D+ N + E + + + V ++++ V+ Sbjct: 867 MQKIKLTNFKDLHFVDMFADENYAIKKENVTEQIYKLLVTDLELQKVL 914 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 74/465 (15%), Positives = 145/465 (31%), Gaps = 106/465 (22%) Query: 905 RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVK 964 II E +G +AAQS+GEP TQ+T+ TFH+ G ++ + +K Sbjct: 1016 NKSIIAPSEMVGTLAAQSVGEPATQMTLNTFHLAGVSANITM------------GVPRLK 1063 Query: 965 SVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT 1024 ++N + + L+ PY L Sbjct: 1064 EIINVAKNIKTPCMKIYLQE-------------PYNKTL--------------------- 1089 Query: 1025 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ 1084 + ++ G + ++D+ + + +L+ D + L + Sbjct: 1090 -EMAKKIQGDIEYSDIKSICEFSEIFYDPVVEDTLIEEDKDFVKSYFDFPDENLDFLQMP 1148 Query: 1085 GNDV-LIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVAD 1143 + +I L ++ ++ ++ Sbjct: 1149 KYIIRIIVDRSKLVSRGLKMDDLIACVHKAFPKKFHIISSDENAR-----------KLII 1197 Query: 1144 LFEARRPKEPAI---LAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE 1200 F P++ I + +++ K + V D + L Sbjct: 1198 RFRCITPEDNNIDIYNVYYNKVINLKITGYNKIKKVYITEDKEQKNWFLQTDGVCLREIM 1257 Query: 1201 GERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM 1260 G +++ +I+ + G+ A I+ E+ V G +N +HI ++ M Sbjct: 1258 SHPDICGHLVTSNDIN--EIVEVLGIEAARETILQELTLVIDGNGSYVNHRHISLLADVM 1315 Query: 1261 LRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESF- 1319 K L GIT+ + F Sbjct: 1316 TMKGY----------------------------------------LTGITRHGVNKVGFG 1335 Query: 1320 -ISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGY 1363 + ASF+ET +L +AA A + + +G+ EN+++G+L P GTG Sbjct: 1336 ALKRASFEETVDILLDAAYAAENNVTKGITENIMMGQLAPLGTGI 1380 >UniRef50_Q86AQ5 DNA-directed RNA polymerase III subunit rpc1 n=8 Tax=Eukaryota RepID=RPC1_DICDI Length = 1450 Score = 607 bits (1566), Expect = e-172, Method: Composition-based stats. Identities = 196/930 (21%), Positives = 362/930 (38%), Gaps = 132/930 (14%) Query: 4 LLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFG 63 +++ LK ++ I+ L S D I S ++ E + KP G+ ++ Sbjct: 1 MIELLKEDDAPKKIGHIQFGLLSEDDIVRLSHVQIVNRELFDLVKRKPTPYGVLDNKLGT 60 Query: 64 PVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSR 123 + +C CG+ + G+I+L P HI +LK++ + Sbjct: 61 S---------------DKQAMCTTCGLSIVDC---VGHFGYIKLQLPVFHIGYLKNIMNI 102 Query: 124 IGLLLDMPLRDIERVLYFESYV------VIEGGMTNLERQQILTEEQYLDALEEFG--DE 175 + ++ + + Y+ ++ ++I E + + G + Sbjct: 103 LQMICKSCSTILLNEEKKQYYLRKMRNKKMDNLQRKSLLKKIFLECRKTKECLKCGSTNG 162 Query: 176 FDAKMGA------------EAIQA--------LLKSMDLEQECEQLREELNETNSETKRK 215 K GA E++Q + + +++ ++ +++LN + K Sbjct: 163 MIKKSGAFKIIHEKYKGKTESLQDYYALYDDAIKYNPEMKSHIKKAQDDLNPLVALNLFK 222 Query: 216 KLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGR-FATSDLNDLYRRVIN 274 K++ + + +PE +ILT + V P +RP VP+DGG DL +++ Sbjct: 223 KISYQDIEIMNMDPVIGRPERLILTYMLVPPVSIRPSVPMDGGSGTNEDDLTMKLSEILH 282 Query: 275 RNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGK 334 N ++ +D A I + LQ + +++ G + + ++ L+ +KGK Sbjct: 283 INEHIRSNVDRAEMSAI-MEDWDYLQASCAIYINSDVPGLPLQMKPTKAVRGLSQRLKGK 341 Query: 335 QGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI 394 GRFR NL GKRVD+SGR+VI+ P L + + +P+ +AL + P + L + Sbjct: 342 TGRFRGNLSGKRVDFSGRTVISPDPNLNIDEVAVPQLIALTMTYPERVTDYNIERLQKYV 401 Query: 395 -----------------------KAAKKMVEREEAVVWDILD-EVIREHPVLLNRAPTLH 430 K + E + DI++ +I +L NR P+LH Sbjct: 402 INGPDRHPGANYIIYADGVKKWLKFGNREKFAAELKIGDIVERHIIDGDIMLFNRQPSLH 461 Query: 431 RLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNI 490 +L I + + ++ + ++ + VC YNADFDGD+M +H+P T EA+ EA LM TNN+ Sbjct: 462 KLSIMSHKARVMPWRTLRFNECVCTPYNADFDGDEMNIHLPQTEEARAEATILMGVTNNL 521 Query: 491 LSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKV 550 ++P NGEP++ +QD + Y ++R + L + + Sbjct: 522 ITPRNGEPLVAATQDFLTASYLISRRDAFYERYRFALMCT------HFADANEHIDLPPP 575 Query: 551 RITEYEKDANGELVAKTSLKDTTVGRAILW------------MIVPKGLPYSIVN----- 593 I + + G+ + + L+ + + + PK N Sbjct: 576 AILKPVELWTGKQIFEVLLRPSVKSHVLCNFETRSRTYSKNLYMCPKDGYVYFRNSELMC 635 Query: 594 QALGKKAIS-----KMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMV--- 645 ++ K I + + R ++ + G S+GI D+ Sbjct: 636 GSIDKSIIGGGNKNSLFHILMRDFSPTIAANCMTRLAKLCARFLGDQGFSIGIPDIKPAE 695 Query: 646 -IPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTE 704 + KK EII A + A + ++SG + + A N +S+ D Sbjct: 696 DLDRKKREIIETAYKKCAVFLKDYESGSLQLSSGCSMEQTFEAKMNQTLSQIRDDC---- 751 Query: 705 TVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM-----AKPDGSI----- 754 ++NS +M G++GS I Q+ G P+G Sbjct: 752 ----GKLCVNDLPNYNSPLIMGLCGSKGSNINIAQMICCVGQQIVNGTRIPNGFTNRTTP 807 Query: 755 ----------IETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVA 804 + ++ +F G+ ++F T G R+GL DTA+KTA +GY+ RRL+ Sbjct: 808 HFKHFAKNPKSKGFVSNSFYTGMIPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLMKAL 867 Query: 805 QDLVVTEDDCGTHEGIMMTPVIEGGDVKEP 834 +DL D + I G D +P Sbjct: 868 EDLSTHYDYTVRDSIGGIVQFIYGDDGLDP 897 Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats. Identities = 91/504 (18%), Positives = 171/504 (33%), Gaps = 134/504 (26%) Query: 863 LLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQS 922 LL E++ + E+ V+ + + + +C Y R I G A+G I AQS Sbjct: 1059 LLGERFAN---EHVVNQIHRITKTQIELFLDICLDKYSR-----ARIEPGTAVGAIGAQS 1110 Query: 923 IGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTEL 982 IGEPGTQ+T++TFH G AS + + +K ++N++ + L Sbjct: 1111 IGEPGTQMTLKTFHFAGVASMNVT-----------LGVPRIKEIINAAKNISTPIITASL 1159 Query: 983 KLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMID 1042 S ++ G + T+ + H V+ ++ ID Sbjct: 1160 N----CDYDIRSARIVAGRI----------EKTTLGHVATHIKEVVKRAGCYLSIK--ID 1203 Query: 1043 GQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLP 1102 + E+ + + + + G L+P + ++P Sbjct: 1204 KNFVDSLQLEI----NSKTISQSIASTKGLKLKPEQITTNGDYKLRIVPP---------- 1249 Query: 1103 GKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGI 1162 I G ++ I G+P V Sbjct: 1250 ----------ANIREGSLYYLQFLKNNLPAVIVKGIPTV--------------------- 1278 Query: 1163 VSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILR 1222 R+VI+ VD +++ + L +G + + Sbjct: 1279 ----------NRVVISKVDEKQERYQLLVEGYDLRAVMATPGIKGTHTTSNHIM--ECEN 1326 Query: 1223 LRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEY 1282 G+ I++E+ + G+ I+ +H+ ++ M Sbjct: 1327 TLGIETARNTIMSEIDMIMTSHGMSIDIRHVMLLADLM---------------------- 1364 Query: 1283 SRVKIANRELEANGKVGATYSRDLLGITKASLAT--ESFISAASFQETTRVLTEAAVAGK 1340 ++ ++LGIT+ +A ES + ASF++TT L +AAV + Sbjct: 1365 ------------------SFKGEILGITRFGIAKMKESVLMLASFEKTTDHLFDAAVHHR 1406 Query: 1341 RDELRGLKENVIVGRLIPAGTGYA 1364 +D++ G+ E +I+G +IP GTG Sbjct: 1407 QDDIVGVSECIIMGVVIPLGTGLF 1430 >UniRef50_B7G2E6 DNA-directed RNA polymerase n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7G2E6_PHATR Length = 1281 Score = 606 bits (1563), Expect = e-171, Method: Composition-based stats. Identities = 226/1046 (21%), Positives = 373/1046 (35%), Gaps = 183/1046 (17%) Query: 50 KPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELAS 109 KP G R+ + + C C ++ G+I LA Sbjct: 5 KPAHGGCLDPRL---------------GVSDKVSACATCKRKLVDCA---GHFGYIRLAL 46 Query: 110 PTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDAL 169 P HI FL+ LL + RVL ES + L++ + Sbjct: 47 PVFHIGFLRHTLH----LLQCVCKTCSRVLMPESDRQKHLSRMRSPKTDALSKAALFKKV 102 Query: 170 EEFGDEFDAKMGAEA----------------IQALLKSMDLEQECEQL------------ 201 E + + K + E E ++L Sbjct: 103 VEKCKKVRVCPHCGGHNGTVKKITGVPTLKIVHERYKGRNAEDELDELIANLEVSLKMNK 162 Query: 202 ------------REELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDL 249 E+L T + ++ + +PE +IL + V P + Sbjct: 163 DVGTAISGSSLPYEDLLPTRALEIFTHISDDDCEVLWIDPLIGRPETLILQSILVPPVPI 222 Query: 250 RPLVPLD-GGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLD 308 RP V +D GG DL + +I+ N L+ L + E LQ V ++ Sbjct: 223 RPSVAMDVGGGSNEDDLTVKLQEIIDVNVALELALMKGPQTRTIMEEWDFLQVQVAQYIN 282 Query: 309 NGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGL 368 G +P++ L +KGKQGRFR NL GKRVD+S R+VI+ P LR+ Q G+ Sbjct: 283 GEMPGLQRP-IGSKPMRGLCQRLKGKQGRFRGNLSGKRVDFSARTVISPDPNLRVDQVGV 341 Query: 369 PKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVV-------------------- 408 P+++A + P + + L ++ + + Sbjct: 342 PERVAKTMTYPERVSRYNIEKLRQRVRNGPDVHPGANLIRMKDGSFVKSLSFGDRELVAK 401 Query: 409 ----WDILDEVIREH-PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDG 463 D+++ + + VL NR P+LH++ I A ++E K + + VCA YNADFDG Sbjct: 402 NLRYGDVVERHMEDDDVVLFNRQPSLHKVSIMAHRAKVMEWKTFRFNTCVCAPYNADFDG 461 Query: 464 DQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKG 522 D+M +H+P T EA+ EA LM +N+ +P NGEP++ SQD + Y +T RD + Sbjct: 462 DEMNMHLPQTEEARTEASLLMGVKHNLTTPRNGEPLVAASQDFLSASYMLTQRDRFFTRE 521 Query: 523 EGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDT---------- 572 + L Y S + I + G+ V L+ Sbjct: 522 QFCQLVS-------YYSDASEDIDIPFPTILRPVELWTGKQVFGMMLRPNRKSSVLVSFE 574 Query: 573 ----------TVGRAILWMIVPKGLPYSIVNQALGKKAIS-----KMLNTCYRILGLKPT 617 + W+ +V+ + KK+I +L R G+ Sbjct: 575 NKEKNYTTNKYFCKNDGWVAFRN---SELVSGNIAKKSIGDGSKSGLLYILLRDCGVHEA 631 Query: 618 VIFADQIMYTGFAYA-ARSGASVGIDDMV----IPEKKHEIISEAEAEVAEIQEQFQSGL 672 D+ + G S+GI D+ + + KH I+SE + + + G Sbjct: 632 ASCMDRWAKFCSRFMGGHRGLSIGISDVTPSARLRDIKHGILSEGYKK-ERLITPMKQGR 690 Query: 673 VTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARG 732 + + + + + + L + N+ +MA+ G++G Sbjct: 691 LELRPGCDLLQ--------SLEEILNGILGRLRESAGQEAMKALPWTNTPRIMAECGSKG 742 Query: 733 SAAQIRQLAGMRGLMAK--------------PDGSI------IETPITANFREGLNVLQY 772 S I Q+ G A P + + +F GL ++ Sbjct: 743 SPLNISQMISCVGQQAVGGMRIQDGFVNRCLPHFEYHSLIPSAKGFVANSFYTGLTATEF 802 Query: 773 FISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVK 832 F G R+GL DTA+KTA +GY+ RRL+ +DL + D + + G D Sbjct: 803 FFHAMGGREGLVDTAVKTAETGYMARRLMKALEDLSLQYDSSVRNSENTVVQFTYGDDGL 862 Query: 833 EPLRDRVLGRVTAEDVLKPG--------TADIL--VPRNTLLHEQWCD-----LLEENSV 877 P R + L+ T D L +T + ++ + LL V Sbjct: 863 NPNMMENNDRPVDFERLRLHISQTTPCPTEDCLSAAALSTTVEKKLAEPRFQALLPTGRV 922 Query: 878 DAVKVRSVVSCDTDFGVCAHCYGR---------DLARGHIINKGEAIGVIAAQSIGEPGT 928 ++R + + + D + GEA+G I AQSI EPGT Sbjct: 923 FMQEIRDFFNSLAENQNSRMTETQLELLLTEALDKCMLAYVEPGEAVGAIGAQSISEPGT 982 Query: 929 QLTMRTFHIGGAASRAAAESSIQVKN 954 Q+T++TFH G +S ++K Sbjct: 983 QMTLKTFHFSGISSMNVTLGVPRLKE 1008 Score = 89.4 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 42/147 (28%) Query: 1219 DILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGE 1278 ++ + GV A I E+ ++ G+ I+ +H+ ++ M K GE Sbjct: 1166 EVEDVLGVEAARTQISAEIDNIMSAYGIGIDQRHLLLLSDVMTFK-------------GE 1212 Query: 1279 QVEYSRVKIANRELEANGKVGATYSRDLLGITKASLAT--ESFISAASFQETTRVLTEAA 1336 +LGIT+ ++ ES + ASF++TT L +AA Sbjct: 1213 ---------------------------VLGITRFGVSKMRESVLMLASFEKTTDHLFDAA 1245 Query: 1337 VAGKRDELRGLKENVIVGRLIPAGTGY 1363 V G+ D + G+ E +I+G +P GTG Sbjct: 1246 VHGRTDTIVGVSECIIMGMEVPVGTGL 1272 >UniRef50_B0WFY1 DNA-directed RNA polymerase n=5 Tax=Diptera RepID=B0WFY1_CULQU Length = 1303 Score = 605 bits (1559), Expect = e-171, Method: Composition-based stats. Identities = 267/1464 (18%), Positives = 480/1464 (32%), Gaps = 273/1464 (18%) Query: 14 TEEFDAIKIALASPDMIRSWSFGEVKKPETINYR-TFKPERDGLFCARIFGPVKDYECLC 72 ++ + + S ++I+ S V N P G+ R+ Sbjct: 12 IKKISHVSFGIDSAELIQQESHLHVVAKNLYNQDANRTPVSYGVLDRRM----------- 60 Query: 73 GKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPL 132 + + C+ C + G+I LA P H+ ++ + +L Sbjct: 61 ----GVSQKDATCDTCKKGLNDC---VGHFGYINLALPVFHVGHFRATIT----ILQSIC 109 Query: 133 RDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEF--DAKMGAE------- 183 + RV+ E L ++ + + + G Sbjct: 110 KICSRVMLKEDEKKQFSARLTNPNLSYLAKKSIHSQVLKKAKKNTKCPCCGCLNGPVKKG 169 Query: 184 -----------------------AIQALLKSMDLEQECEQ------LREELNETNSETKR 214 A+ +L +++ +E Q L +ELN Sbjct: 170 AGLMKIVHEPFRGKKATDPLVTSALDEMLGAIEGNRELSQTVGPSSLIKELNPLEVLDLF 229 Query: 215 KKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLD-GGRFATSDLNDLYRRVI 273 K + K L + P +I+T + V P +RP V + DL ++ Sbjct: 230 KNIPKSDIPLLGMTSPESNPADLIVTRVFVPPVCIRPSVVSEVKAGTTEDDLTMKQSEIL 289 Query: 274 NRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKG 333 ++ + + + +++ + LQ ++ G ++ K+P + + +KG Sbjct: 290 LISDVITKHMMSGGKIELIQEDWDYLQLHCALYFNSELSGIPLSLMPKKPTRGIVQRLKG 349 Query: 334 KQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATT 393 KQGRFR NL GKRVD+S R+VI+ P L +HQ G+P ++A L P + + Sbjct: 350 KQGRFRGNLSGKRVDFSARTVISPDPNLMIHQVGVPDRVAKILTFPERVNTANINRMRQL 409 Query: 394 IKAA-----------------KKMVE--REEAVVWD------ILDEVIREHPVLLNRAPT 428 IK KK + + V D + ++ VL NR P+ Sbjct: 410 IKNGTEKHPGANYVQQKGSAFKKYLAYGNRDKVAQDLKCGDIVERHLMDGDVVLFNRQPS 469 Query: 429 LHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTN 488 LH+L I + + + + C YNADFDGD+M +H+P T EA+ EA LM + + Sbjct: 470 LHKLSIMCHVAKVQPQRTFRFNECACTPYNADFDGDEMNLHLPQTEEARAEALVLMGNKS 529 Query: 489 NILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVLTGPKEAERLYRSGLASLHAR 547 N+++P NGE +I +QD + G Y +T +D + + M L A L Sbjct: 530 NLVTPRNGELLIAATQDFITGGYLLTQKDQFLTREQVMQLA----ACMLSGPDANMEIDL 585 Query: 548 VKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNT 607 K I + K G+ + LK +V L N GK I K+L Sbjct: 586 PKPAIIKPRKLWTGKQIFSLILKPN------RHSVVNANLSTKGRNYTTGK-DIRKLL-- 636 Query: 608 CYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQ 667 E+K +++ + E + Sbjct: 637 ----------------------------------------EEKQKLLENGYSRCDEYIAE 656 Query: 668 FQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMAD 727 + G + A + M+ L + + + NS +MA Sbjct: 657 MKKGTLQCQPGC--------TAEQTLEAVMLKELSSIRELAAKACFRELHPTNSALIMAQ 708 Query: 728 SGARGSAAQIRQLAGMRGLMA-----KPDGS---------------IIETPITANFREGL 767 SG++GS I Q+ G A P+G + +F GL Sbjct: 709 SGSKGSNINISQMIACVGQQAINGKRVPNGFEDRALPHFEKFSKIPAARGFVQNSFYSGL 768 Query: 768 NVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIE 827 ++F T R+GL DTA+KTA +GYL RRLV +DLVV D + + Sbjct: 769 TPTEFFFHTMAGREGLVDTAVKTAETGYLQRRLVKCLEDLVVQYDGTVRNAIGEVVEFTY 828 Query: 828 GGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVS 887 G D +P+ V + + ++ R+ + E ++ Sbjct: 829 GADGLDPVFMEVKNKPVDIERQFMHVRNMFPCRDEA--PLRGAEILETGDKILQTAEFDG 886 Query: 888 CDTDF-GVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQ-------LTMRTFHIGG 939 C DF C + R H + + + E T + +R + Sbjct: 887 CRADFRKECLEFLKKFGERLHSVQSRYNTDAKVSLEV-ERTTPGQLKKFLMQVRDKYNKA 945 Query: 940 AASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPY 999 A ++ ++ G + +G + ++++ TK Sbjct: 946 ITEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIVEIINATKAI----- 1000 Query: 1000 GAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSL 1059 + P+IT + ++ + E T L Sbjct: 1001 ------------------------STPIIT---AEIADNTSMEFARKVKARIEKTTLGE- 1032 Query: 1060 VVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGD 1119 + E D +K+ + + + +Y + + ++ V++ Sbjct: 1033 -ISSYIEEVYKSDDCFLLIKLDLDRIRVLGLEVNAETIRYSICTSKLKLKQENVEVYGPS 1091 Query: 1120 TLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITP 1179 + P + + + L R+ L+ I +V G + + + Sbjct: 1092 LIIIRPDPTKHSHALNAELQRL--------------LSAIPNVVVAGLPQVSRAVIAVDD 1137 Query: 1180 VDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQD 1239 G Y+ + + +V V S+ ++ G+ A I+NE+ D Sbjct: 1138 AHGPPTYKLCVEGYGLRDVMATYGVVGARTKSN---NILEVYVTLGIEAARTTIMNEITD 1194 Query: 1240 VYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVG 1299 V G+ ++ +HI ++ QM + + Sbjct: 1195 VMEGHGMSVDHRHIMLLASQMTSRGEV--------------------------------- 1221 Query: 1300 ATYSRDLLGITKASLAT--ESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLI 1357 LGIT+ LA ES + ASF++T L +AA G+ D + G+ E +I+G Sbjct: 1222 -------LGITRHGLAKMRESVFNLASFEKTADHLFDAAYYGQTDSIDGVSERIILGMPA 1274 Query: 1358 PAGTGYAYHQDRMRRRAAGEAPAA 1381 GTG E Sbjct: 1275 AIGTGLFKLIHNHTETKLDEMVEP 1298 >UniRef50_B9PZ91 DNA-directed RNA polymerase n=3 Tax=Toxoplasma gondii RepID=B9PZ91_TOXGO Length = 1747 Score = 601 bits (1550), Expect = e-170, Method: Composition-based stats. Identities = 193/906 (21%), Positives = 345/906 (38%), Gaps = 121/906 (13%) Query: 17 FDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYK 76 DA++ + S + I +S E+ E T P G+ R+ GP K Sbjct: 113 VDAVQFDVLSGEEISRYSEVEIHNREIYVNMTNTPHPYGVLDLRL-GPNKS--------- 162 Query: 77 RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIE 136 C+ CG + Q G+++L +P H+ + K + + + ++ Sbjct: 163 -----DSRCQTCGHTLLQCT---GHWGYMDLQAPVYHVGYFKYVLQILYCICKTCAALLQ 214 Query: 137 RVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSM---D 193 E ++ + + L ++ ++A ++ F+ A Q +LK + Sbjct: 215 PPEQKEKLLLRIRRHQSDPIVKRLLFKRTVEACKKVSKCFE----CGAPQGVLKRVVKPS 270 Query: 194 LEQECEQLREE---------LNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPV 244 L+Q + + + K L +RI+ E + PE ++L+ L V Sbjct: 271 LDQFMKIRHVVKSKEGRAMTVEDDLDPLYVKNLLERIRPSECEILDIVSPEKLLLSRLLV 330 Query: 245 LPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVD 304 P +RP V + DL + + NN L+ + LQ Sbjct: 331 PPSCIRPSVTIGEQGTTEDDLTCVLSDIAELNNVLQSHVQAGFHTNQFLGIWEFLQLQCT 390 Query: 305 ALLDNGRRGRAITGSNK---RPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYL 361 L++ + ++K +P + + +KGK+GRFR NL GKRVD+SGR+VI+ P Sbjct: 391 RLINADAPAVSQLLASKNISKPGRGICQRLKGKEGRFRGNLSGKRVDFSGRTVISPDPNA 450 Query: 362 RLHQCGLPKKMALELFKPFIYGKLELRGLATTI------KAAKKMVER------------ 403 +++ +P+ +A L P ++ + L + V + Sbjct: 451 NVYEVVVPEWVAKRLTFPERVNRVNIEVLRAAVLKGCSDWPGACYVNKVDGSKCSLRYAN 510 Query: 404 -----EEAVVWDILDEVI-REHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAY 457 E + D+++ + VL NR P+LHR+ I A ++ + + + VC+ Y Sbjct: 511 RRQVAENLQIGDVVERHLCNGDVVLFNRQPSLHRMSIMAHRARVMPWRTFRFNECVCSPY 570 Query: 458 NADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDC 517 NADFDGD+M +H+P T EA+ EA LM NN+++P NGEP+I +QD + Y +T Sbjct: 571 NADFDGDEMNLHLPQTHEARAEALYLMGVVNNLVTPKNGEPLIAATQDFLSSSYMLTHKD 630 Query: 518 VNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITE--------YEKDANGELVAKTSL 569 V + L + L R L V + + N ++ L Sbjct: 631 VFLTRDQFCLICSYFTDGLSRVDLPPPTILKPVELWTGKQVISVLLRPNRNSFVMVNFQL 690 Query: 570 KDTTV-------------GRAILWMIVPKGLPYSIVNQALGKKAIS----KMLNTCYRIL 612 K+ + ++I +V +GKK + + R Sbjct: 691 KEREFSAARIPPGEAPFMCPSDAYVIFR---HSELVAGCIGKKVLGDAKFGLFFHLIRDN 747 Query: 613 GLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEK----KHEIISEAEAEVAEIQEQF 668 +I + A G ++GIDD+ K +I++ VA+ + + Sbjct: 748 SPAQAAACMGRIAKLSARWFANRGMTIGIDDVTPSPTLLAAKKDILNHGYNLVAQEIQMY 807 Query: 669 QSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADS 728 + G + + K+++D+L+ E + N +M +S Sbjct: 808 KKGALQPHPGC-----TLEQTLEVRVKSILDDLRNEAGKACNRVLH---PLNKPLIMFNS 859 Query: 729 GARGSAAQIRQLAGMRGLMAKPDGSI--------------------IETPITANFREGLN 768 GA+G+ I Q+ G I + ++F GL Sbjct: 860 GAKGALINIAQMIACVGQQNVSGQRIQNGFVSRTLPHFPLNCRDAKSRGFVASSFYSGLQ 919 Query: 769 VLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEG 828 ++F T R+GL DTA+KTA +GY+ RRL+ +DL + D+ + + G Sbjct: 920 PDEFFFHTMSGREGLVDTAVKTAETGYMQRRLMKALEDLSIRYDNSVRTSDGQIVQFVYG 979 Query: 829 GDVKEP 834 D P Sbjct: 980 DDGLNP 985 Score = 139 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 80/470 (17%), Positives = 160/470 (34%), Gaps = 120/470 (25%) Query: 897 HCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKG 956 C R + I GEA+G + AQSIGEPGTQ+T++TFH G AS Sbjct: 1366 RCSWRKYVKA-ISEAGEAVGAMGAQSIGEPGTQMTLKTFHFAGVASMNVT---------- 1414 Query: 957 SIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGET 1016 + + +K ++N++ K+ T + ++ +Y V + ++ Sbjct: 1415 -LGVPRIKEIINAAQKI-----QTPIIVVPLVNDEDYNYAV------MVKN--RIEK-TL 1459 Query: 1017 VANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRP 1076 ++ + V ++ +D TI + + +++ V D+ R +R Sbjct: 1460 LSECCSYIKEVYAPDGAWLVVK--LDQHTIRKLFLD---INANTVKDAILRQTAVNKVR- 1513 Query: 1077 ALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITG 1136 N V I +P + L + G KD+ Sbjct: 1514 ------ITKNSVEIINE--WKVRVMPPGGNQIFFQLQALK----LGLLNIVLCGHKDVKR 1561 Query: 1137 GLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQL 1196 G+ + + + + K+ + G + V G+ + + + Sbjct: 1562 GVIKCEQVEQPDKTKKTVYGLAVEGY-------------GLRDVMGTQGVKALQATSNHV 1608 Query: 1197 NVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVI 1256 ++ ++ G+ A I++E++ + I+ +H+ ++ Sbjct: 1609 M---------------------EVAQILGIEAARAVIISEIRKCMDAYSMDIDCRHMTLL 1647 Query: 1257 VRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLAT 1316 M + ++LGI + + Sbjct: 1648 GDVMT----------------------------------------FRGEVLGINRFGIQK 1667 Query: 1317 --ESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 S + ASF+ET L EAAV + D ++G+ E +I+G+ + GTG Sbjct: 1668 MRASTLMLASFEETNEHLFEAAVHHRADPVKGVSECIIMGKQVSLGTGSF 1717 >UniRef50_B1L739 DNA-directed RNA polymerase n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L739_KORCO Length = 1324 Score = 593 bits (1530), Expect = e-167, Method: Composition-based stats. Identities = 237/1111 (21%), Positives = 434/1111 (39%), Gaps = 152/1111 (13%) Query: 8 LKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKD 67 + + D + L SP R F E+ +P + P + G+ R+ G + Sbjct: 9 PEEEILPYRLDKVIFGLISPADARKIGFIEITEPTAYD-EGGLPVQGGVLDPRL-GTINP 66 Query: 68 YECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLL 127 + C CG G IELA P HI ++K RI + Sbjct: 67 RQ--------------RCPVCGNLPKNCP---GHFGRIELAMPVIHIGYVK----RIKDV 105 Query: 128 LDMPLRDIERVLYFESYV--VIEGGMTNLERQ--QILTEEQYLDALEEFGDEFDAKMGAE 183 L+ +VL + +IE +++ +E + ++ Sbjct: 106 LNTVCHKCGKVLLPQERRSQLIERAHEYARDNPEKVVDDELVREVRDQVKVYAKKHKKCP 165 Query: 184 AIQALLKSMDLEQECEQLREE-----LNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMI 238 A + ++LE+ + + +E L +K++ LL F +PEW + Sbjct: 166 HCGAPVHRVELEEVYKFIVKEPEPRRLWPNEIRDILEKISDDDSLLIGFDPKKARPEWAV 225 Query: 239 LTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRM 298 LTVL V P RP + L+ G + DL + ++ N +L + AP +V +E Sbjct: 226 LTVLLVPPLTARPSIYLETGERSEDDLTHILVEILKANRKLNNSKKVGAPVSMVESEWDH 285 Query: 299 LQEAVDALLDNGRRGRAITGSNK--RPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIT 356 LQ V +N G + RPLKSL + GK+GR R+NL+GKRV++S R+VI+ Sbjct: 286 LQYWVSVFFNNATAGMPVAMQKGTRRPLKSLFQRLSGKEGRLRKNLIGKRVNFSARTVIS 345 Query: 357 VGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAK------------------ 398 P + + + G+P ++A+ L P + + + + Sbjct: 346 PDPMIDIDEVGVPVEIAMVLTVPEYVNENNIEKMKELVMRGPDEYPGANAIRKGGVTPIS 405 Query: 399 -KMVER----------EEAVVWDILD-EVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKA 446 K+++R E+ DI++ ++ V+ NR P+LH+L + ++ G Sbjct: 406 LKILQRKGKDALREAAEQLEPGDIVERHLMDGDYVIFNRQPSLHKLSMLGHRVKVLPGAT 465 Query: 447 IQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDV 506 +LHP VC YNADFDGD+M +HVP L+ +E R LM N+LSP G II QD Sbjct: 466 FRLHPAVCVPYNADFDGDEMNLHVPQILDGSVEVRELMGVKYNMLSPRTGGSIIGARQDF 525 Query: 507 VLGLYYMT-RDCVNAKGEGMVLTGPKEAERLYRSGL---ASLHARVKVRITEYEKDANGE 562 + LY +T +D + K E + +L + L ++ KD N E Sbjct: 526 ITALYMITKKDALFDKNEATRILSRAGITQLPEPAIKRPKRLWTGKQLISMLLPKDLNFE 585 Query: 563 LVAKTSLKDTTVGRA----ILWMIVPKG-LPYSIVNQALGKKAISK---MLNTCYRILGL 614 +AK+++K + ++++ +G L +++ + + +++ R G Sbjct: 586 GIAKSAVKASECKDPSCLGDGYVLIREGKLLSGVLDDNIVGTLVKGRLTLIDVLIRDYGE 645 Query: 615 KPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEV-AEIQEQFQSGLV 673 + F ++++ G + +++IPE+ I E + + E+ +S + Sbjct: 646 DVAIEFLNKLLKIASKEVLLYGITNSPKELMIPEEAKREIEEIYSNMKEEVTRLIRSRPI 705 Query: 674 TAGER-YNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQV--SFNSIYMMADSGA 730 T Y ++ + ++ + + +++ +MA +GA Sbjct: 706 TRKITIYRTKEELLRIMREEQMLEFDIVQTMDSFWGKVSSVISKYIDPKSNVSIMAKTGA 765 Query: 731 RGSAAQIRQLAGMRGLM------------AKPDGSIIE----------------TPITAN 762 RGS A + Q+ G G +P + + + Sbjct: 766 RGSMANLAQIVGQVGQQKVKTRIGFVLTSGRPRKGYKDRVLSYFQRGDLSPEARGFVKNS 825 Query: 763 FREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMM 822 + GLN ++ +R+ L D +T +SGY RR+ + +D+ V+ D+ + Sbjct: 826 YVSGLNPAEFIFHAMSSRESLIDKGRRTEDSGYFYRRVANSLKDVYVSYDETVRDSMGHI 885 Query: 823 TPVIEGGDVKEPLR---------DRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLE 873 GGD +P + +R++ + E+ + + D + LL E L Sbjct: 886 IQFKFGGDGYDPTKLFRNEPVNLERIIRKYVKEERKRGVSKDKI---EELLKEANLPLSL 942 Query: 874 ENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMR 933 +++ + + G + A+ + IG+I+AQSI EP TQ+ +R Sbjct: 943 ADAIHGA---RPKESELKEIIAELKEGFERAK---VEVLTPIGLISAQSIAEPTTQMVLR 996 Query: 934 TFHIGG------------------AASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVI 975 TFH G AS + I +K K +SN++ ++ + +L + Sbjct: 997 TFHAPGLLAMDVTHGVERFKELVFYASTSTPTMKIYLKQKCQEDISNLRKILRNLKELRV 1056 Query: 976 TSRNTELKL--------IDEFGRTKESYKVP 998 E + I R E+ +P Sbjct: 1057 RDLIEEYAIDNFNYRLTIKPDKRALENNMIP 1087 Score = 59.7 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 37/188 (19%), Positives = 70/188 (37%), Gaps = 35/188 (18%) Query: 1175 LVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIV 1234 + DG Y V V+ I++ +I R+ G+ A I Sbjct: 1153 VETVETDGRKEYIIRTSGSNLAAVLSMSCVDIARTITN---DCKEIERVLGIEAARNCIF 1209 Query: 1235 NEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEA 1294 NE+ + QG++++ ++I ++ M TI L+A Sbjct: 1210 NELASILEEQGLEVDRRYISLVADIMTYSGTIEAI---------------------RLQA 1248 Query: 1295 NGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVG 1354 G +S ++ +S +F+ TT V+ A G+ +++ G + +I+G Sbjct: 1249 AGVSSGFFS-----------EMKTPLSKMAFEWTTHVILNTARRGEVNKILGPLDALIMG 1297 Query: 1355 RLIPAGTG 1362 + P GTG Sbjct: 1298 QTPPIGTG 1305 >UniRef50_Q6CB20 DNA-directed RNA polymerase n=1 Tax=Yarrowia lipolytica RepID=Q6CB20_YARLI Length = 1483 Score = 593 bits (1530), Expect = e-167, Method: Composition-based stats. Identities = 200/992 (20%), Positives = 358/992 (36%), Gaps = 161/992 (16%) Query: 5 LKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETIN-YRTFKPERDGLFCARIFG 63 LK + I+ SP I S EV + + + P G R+ Sbjct: 9 LKDRFSSDPPRVIGGIEFGALSPQEILKLSEVEVATRDLYDLQKGRAPMEYGALDPRM-- 66 Query: 64 PVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSR 123 + C+ C + GH++LA P HI + K+ S Sbjct: 67 -------------GVSSNMSKCKTCAEPLATCP---GHFGHVKLALPCFHIGYFKATIS- 109 Query: 124 IGLLLDMPLRDIERVLYFES------YVVIEGGMTNLERQQILTEEQYLDALEEFGDEFD 177 +L +D R+L + + G+ NL R QIL + + + Sbjct: 110 ---ILQNVCKDCARILLSDEDRRKFLTELRRPGIDNLRRMQILKKVNEQCKKQRRCVHCN 166 Query: 178 A-----------KMGAEAIQALLKSM-------------------DLEQECEQLREELNE 207 + K+ + + + K + D+E+ ++ ++LN Sbjct: 167 SINGVVKKAGPLKIIHDKFRHVGKKIPEEKTEFDNSFNTAKESIPDVERLQKKAMDDLNP 226 Query: 208 TNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLND 267 +++ L +PE I +P P +RP V + DL Sbjct: 227 LKVFNLFREILPMDCELLGMDPGKGRPETYIWRYMPAPPVCIRPSV-MQDSASNEDDLTV 285 Query: 268 LYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSL 327 ++ + ++ L + + +LQ AV +++ ++K P+++L Sbjct: 286 KLTEIVWTSAIIEAGLKQGMAVASLMEQWELLQLAVAVYINSDTPQGPGQSASK-PIRAL 344 Query: 328 ADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLEL 387 +KGKQGRFR NL GKRVD+SGR+VI+ P LR+ Q +P ++A L P + Sbjct: 345 TQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDQVAVPDRVAKILTYPERVTSHNI 404 Query: 388 RGLATTI-------KAAKKMVER-----------------EEAVVWDILDEVIR-EHPVL 422 L + A + ++ E + D+++ + VL Sbjct: 405 EKLRNLVITGPSQHPGANYLFKKGESLRRNLRFGDRAKIAERLEIGDVVERHLEDGDVVL 464 Query: 423 LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARA 482 NR P+LHRL I A + + +L+ VC YNADFDGD+M +HVP T EA+ EA Sbjct: 465 FNRQPSLHRLSILAHFAQIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARTEAMC 524 Query: 483 LMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCV------------NAKGEGMVLTGP 530 LM +N+++P +GEPII +QD + G + +++ M P Sbjct: 525 LMGVKHNLVTPRSGEPIIAATQDFITGSFLISKKDYMIDRRTFCQLLAMMSDGDMQFDIP 584 Query: 531 KEAER---LYRSGLASLHARV------KVRITEYEKDANGELVAKTSLKDTTVGRAILWM 581 A + +G + KV I K+ + + +D + L + Sbjct: 585 PPAIQKPVQLWTGKQVFSLLIRPNKSSKVIINLDAKNKTFQPPPQGYPRDMSPNDGFLVI 644 Query: 582 IVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGI 641 + + ++ LG + + R G +++ + G S+GI Sbjct: 645 RNSQVMCGAMDKATLGDGKKDSVFYSILRDYGPDEAAGAMNRMAKLCARWLGGRGFSIGI 704 Query: 642 DDMV----IPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYN-------KVIDIWAAAN 690 D+ + K ++ +A A+ E+ E G + K+ + + Sbjct: 705 SDVTPGAELSSTKEILVEQAYAKCDELIEALAQGKLEPQPGCTPAQTLEAKIGGLLSKVR 764 Query: 691 DRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM--- 747 + V + + L+ N+ +MA G++GS + Q+ + G Sbjct: 765 EEVGEVCIKELEKS---------------NAPLIMATCGSKGSTLNVSQMVAVVGQQIIS 809 Query: 748 --AKPDGS---------------IIETPITANFREGLNVLQYFISTHGARKGLADTALKT 790 P+G + + +F GL+ ++ R+GL DTA+KT Sbjct: 810 GKRVPNGFQDRSLPHFRKFSVTPPSKGFVRNSFYSGLDPPEFLFHAISGREGLVDTAVKT 869 Query: 791 ANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLK 850 A +GY++RRL+ +DL D + GGD +P R Sbjct: 870 AETGYMSRRLMKSLEDLSARYDSTVRTSSNGVVQFRYGGDGLDPFDMEGDAR-------- 921 Query: 851 PGTADILVPRNTLLHEQWCDLLEENSVDAVKV 882 P + + + E +++ V Sbjct: 922 PVDFNRTWTHCEYISSKLGIEPEAETINVSSV 953 Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 87/472 (18%), Positives = 163/472 (34%), Gaps = 109/472 (23%) Query: 895 CAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKN 954 C Y + + G A+G I AQSIGEPGTQ+T++TFH G AS Sbjct: 1085 CLRKY-----QKAQVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVT-------- 1131 Query: 955 KGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGG 1014 + + +K ++N+S + T + ++ ++ G + G+ Sbjct: 1132 ---LGVPRIKEIINASKAISTPIITT----VLNNETELQAARIVKGRIEKTLLGDIAHYI 1184 Query: 1015 ETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDL 1074 + ++ ++ V + + ID + D+ + ++ + G+ Sbjct: 1185 QDEYSYAKASVRVRIDF-------NTIDHLLLEIDMDQ---IREAIIKAPKLKLKPGQ-- 1232 Query: 1075 RPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDI 1134 + I + + V I + G + DG G + Sbjct: 1233 ---VSIEEEKYIRVDIESDAVKKN----GSTTIIDTDGEIFEEG------------VESD 1273 Query: 1135 TGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWR 1194 T R L K + G R VI + + +E ++ + Sbjct: 1274 TAMFLRTQHL------KRVLPNVVVKGFTDI-------SRAVINIREKDNTHELLVEGYG 1320 Query: 1195 QLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIE 1254 +V V ++ ++L G+ A I++E+ G+ ++ +HI Sbjct: 1321 LRHVMTTSGVIGTQTSTNHVLEVKEVL---GIEAARASIIHEIDYTMSKHGMSVDPRHIT 1377 Query: 1255 VIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASL 1314 ++ M Y D+LGIT+ L Sbjct: 1378 LLGDVMT----------------------------------------YKGDVLGITRFGL 1397 Query: 1315 AT--ESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 A +S + ASF++TT L +AA K D++ G+ E +I+G+ + GTG Sbjct: 1398 AKMRDSVLQLASFEKTTDHLFDAAFYMKTDDVEGVSECIILGQGMSIGTGAF 1449 >UniRef50_P04051 DNA-directed RNA polymerase III subunit RPC1 n=14 Tax=Dikarya RepID=RPC1_YEAST Length = 1460 Score = 593 bits (1529), Expect = e-167, Method: Composition-based stats. Identities = 204/959 (21%), Positives = 357/959 (37%), Gaps = 161/959 (16%) Query: 5 LKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFK-PERDGLFCARIFG 63 +K + + ++ + S I + S EV + + + P+ +G ++ Sbjct: 1 MKEVVVSETPKRIKGLEFSALSAADIVAQSEVEVSTRDLFDLEKDRAPKANGALDPKMGV 60 Query: 64 PVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSR 123 EC C + GH++LA P HI + K+ Sbjct: 61 SSSSLECA---------------TCHGNLASC---HGHFGHLKLALPVFHIGYFKATIQ- 101 Query: 124 IGLLLDMPLRDIERVLYFES------YVVIEGGMTNLERQQILTEEQYLDALEEFGDEFD 177 +L ++ +L E+ + + G+ NL R IL + + Sbjct: 102 ---ILQGICKNCSAILLSETDKRQFLHELRRPGVDNLRRMGILKKILDQCKKQRRCLHCG 158 Query: 178 AKMG------------------------------------AEAIQALLKSMDLEQECEQL 201 A G E + L + +LE+ ++ Sbjct: 159 ALNGVVKKAAAGAGSAALKIIHDTFRWVGKKSAPEKDIWVGEWKEVLAHNPELERYVKRC 218 Query: 202 REELNETNSETKRKKLTKRIKLLEAFVQS--GNKPEWMILTVLPVLPPDLRPLVPL-DGG 258 ++LN + K++ L + +PE I LP P +RP V + D Sbjct: 219 MDDLNPLKTLNLFKQIKSADCELLGIDATVPSGRPETYIWRYLPAPPVCIRPSVMMQDSP 278 Query: 259 RFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNG------RR 312 DL ++ ++ +K LD + LQ V +++ Sbjct: 279 ASNEDDLTVKLTEIVWTSSLIKAGLDKGISINNMMEHWDYLQLTVAMYINSDSVNPAMLP 338 Query: 313 GRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKM 372 G + G +P++ +KGKQGRFR NL GKRVD+SGR+VI+ P L + + +P ++ Sbjct: 339 GSSNGGGKVKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRV 398 Query: 373 ALELFKPFIYGKLELRGLATTI-------KAAKKMVEREE-----------------AVV 408 A L P + L I A +++R E + Sbjct: 399 AKVLTYPEKVTRYNRHKLQELIVNGPNVHPGANYLLKRNEDARRNLRYGDRMKLAKNLQI 458 Query: 409 WDILDEVIR-EHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMA 467 D+++ + VL NR P+LHRL I + + + +L+ VC YNADFDGD+M Sbjct: 459 GDVVERHLEDGDVVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMN 518 Query: 468 VHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKG---- 522 +HVP T EA+ EA LM NN+L+P +GEPII +QD + G Y ++ +D + Sbjct: 519 LHVPQTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRATLTQ 578 Query: 523 ---------EGMVLTGPKEAERLY-RSGLASLHARVKVRITEYE------KDANGELVAK 566 E + P + Y +G +K K+ Sbjct: 579 LLSMMSDGIEHFDIPPPAIMKPYYLWTGKQVFSLLIKPNHNSPVVINLDAKNKVFVPPKS 638 Query: 567 TSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAIS-----KMLNTCYRILGLKPTVIFA 621 SL + + ++I+ I++ + K + + T R G + Sbjct: 639 KSLP-NEMSQNDGFVIIR---GSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAM 694 Query: 622 DQIMYTGFAYAARSGASVGIDDMV----IPEKKHEIISEAEAEVAEIQEQFQSGLVTAGE 677 +++ + G S+GI+D+ + +KK E++ A + E+ F G + Sbjct: 695 NRMAKLCARFLGNRGFSIGINDVTPADDLKQKKEELVEIAYHKCDELITLFNKGELETQP 754 Query: 678 RYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQI 737 N+ + A +SK + D + ++N+ +MA G++GS + Sbjct: 755 GCNEEQTLEAKIGGLLSKVREE--------VGDVCINELDNWNAPLIMATCGSKGSTLNV 806 Query: 738 RQLAGMRGLM-----AKPDGS---------------IIETPITANFREGLNVLQYFISTH 777 Q+ + G PDG + + +F GL+ ++ Sbjct: 807 SQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQSKGFVRNSFFSGLSPPEFLFHAI 866 Query: 778 GARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLR 836 R+GL DTA+KTA +GY++RRL+ +DL D+ + GGD +PL Sbjct: 867 SGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSANGIVQFTYGGDGLDPLE 925 Score = 139 bits (350), Expect = 8e-31, Method: Composition-based stats. Identities = 113/579 (19%), Positives = 193/579 (33%), Gaps = 138/579 (23%) Query: 804 AQDLVVTEDDCG-------THEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTA-- 854 ++ +V D+ G ++ + D LR+ + G+ TA L+ Sbjct: 970 LEERLVRYDNSGCLVKREDLNKAEYVDQYDAERDFYHSLREYINGKATALANLRKSRGML 1029 Query: 855 ---DILVPRNTLLHEQW-CDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIIN 910 + + + SV + S S + Y R + Sbjct: 1030 GLLEPPAKELQGIDPDETVPDNVKTSVSQLYRISEKSVRKFLEIALFKY-----RKARLE 1084 Query: 911 KGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSS 970 G AIG I AQSIGEPGTQ+T++TFH G AS + + +K ++N+S Sbjct: 1085 PGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVT-----------LGVPRIKEIINAS 1133 Query: 971 GKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITE 1030 + N L + + +V G +V +++ + V + Sbjct: 1134 KVISTPIINAVLV----NDNDERAARVVKG---------RVEK-TLLSDVAFYVQDVYKD 1179 Query: 1031 VSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLI 1090 F++ ID TI + ELT + + R + K Q +DV I Sbjct: 1180 NLSFIQVR--IDLGTIDKLQLELT---IEDIAVAITRASKLK----------IQASDVNI 1224 Query: 1091 PGTDMPAQYFLPGK--AIVQLEDGVQISSGDTLARIPQESGGTKDIT-GGLPRVADLFEA 1147 G D A P A + S D R+ Q D+ GLP ++ Sbjct: 1225 IGKDRIAINVFPEGYKAKSISTSAKEPSENDVFYRMQQLRRALPDVVVKGLPDISR---- 1280 Query: 1148 RRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERG 1207 I G E G R ++ T G Sbjct: 1281 -----AVINIRDDGKRELLVEGYGLRDVMCTDG------------------------VIG 1311 Query: 1208 DVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIV 1267 + ++ + G+ A I+ E+ G+ ++ +HI+++ M Sbjct: 1312 SRTTTNHVL--EVFSVLGIEAARYSIIREINYTMSNHGMSVDPRHIQLLGDVMT------ 1363 Query: 1268 NAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLAT--ESFISAASF 1325 Y ++LGIT+ L+ +S + ASF Sbjct: 1364 ----------------------------------YKGEVLGITRFGLSKMRDSVLQLASF 1389 Query: 1326 QETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 ++TT L +AA K+D + G+ E +I+G+ + GTG Sbjct: 1390 EKTTDHLFDAAFYMKKDAVEGVSECIILGQTMSIGTGSF 1428 >UniRef50_D1H4X6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Vitis vinifera RepID=D1H4X6_VITVI Length = 1819 Score = 590 bits (1521), Expect = e-166, Method: Composition-based stats. Identities = 233/1121 (20%), Positives = 419/1121 (37%), Gaps = 169/1121 (15%) Query: 1 MKDLLKFLKAQT----KTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGL 56 MKD ++F K + ++I+ AL S I + +V + + KP +GL Sbjct: 1 MKDGIQFTKEPYIEDVGPRKIESIRFALFSESEISKAAEVQVWRGVYYD-ANRKPIENGL 59 Query: 57 FCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWF 116 R+ GP ++ C C G++ LA P ++ + Sbjct: 60 LDPRM-GPA--------------NKNGTCATCLGNFRDCP---GHCGYLTLALPVYNVGY 101 Query: 117 LKSLPSRIGLLLD------------------MPLRDIERVLYFESYVVIEGGMTNLERQQ 158 L ++ + + M + +E + E I T + + Sbjct: 102 LSTIVDILKCICKSCSRVLLDEKASKDYLKKMRSQKMEALKKAELMKKIVQKCTAMASSK 161 Query: 159 ILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLR------------EELN 206 + + + + +G ++ + LE+ + + LN Sbjct: 162 KAVKCSRCGYMNGIVKKAVSVLGIIHDRSKIADGSLEECSSAISHTKESKASFSVVDILN 221 Query: 207 ETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGG-RFATSDL 265 + K++ L + +PE ++LT + V P +RP V +DGG + +D+ Sbjct: 222 PVKVLSLFKRMMDEDCDLLNLAE---RPEKLVLTNIGVPPIAIRPSVFMDGGTQSNENDV 278 Query: 266 NDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLK 325 + +R+I N L + L LQ V +++ RG + RPL Sbjct: 279 TERLKRIIQANASLHQELQDTGSTSKCLAGWDYLQIEVAQYINSDVRGVPLAMQAARPLS 338 Query: 326 SLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKL 385 +KGKQGRFR NL GKRV+Y+GR+VI+ P L++ + +P MA L P Sbjct: 339 GFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPILMAKILSYPERVSHH 398 Query: 386 ELRGLATTI------KAAKKMVEREEAVV------------------WDILDEVIREHPV 421 + L I K++ + + + + + V Sbjct: 399 NIEKLRQCILNGPFKYPGAKLIRYPDGSMRSLMFSGRKRFADELKYGYIVERHLEDGDVV 458 Query: 422 LLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEAR 481 L NR P+LHR+ I ++ + ++ + VC YNADFDGD+M +HVP T EA+ EA Sbjct: 459 LFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAL 518 Query: 482 ALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGL 541 LM NN+ +P NGE ++ +QD + + +TR L Y Sbjct: 519 MLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCS------YMGDG 572 Query: 542 ASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPY------------ 589 L I + + G+ + L+ R L + V + Sbjct: 573 MDLVDLPTPAIIKAMELWTGKQLFNVLLRPHANVRVYLNLTVMEKTYNKRRGKETMCPSD 632 Query: 590 --------SIVNQALGKKAIS-----KMLNTCYRILGLKPTVIFADQIMYTGFAYAARSG 636 +++ LGK + + + R +++ + G Sbjct: 633 GFVYFRNSELISGQLGKATLGNGNKDGLFSVLLRDYNAHAAAACMNRLAKLSARWIGNHG 692 Query: 637 ASVGIDDM----VIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDR 692 S+GIDD+ ++ ++K + I E E+ +Q+ G + N + A Sbjct: 693 FSIGIDDVQPGGLLNDQKSKRIEEGYENCHELIQQYNKGKLKLQPGCNAAQTLEAEITGV 752 Query: 693 VSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAK--- 749 ++K + E+ NS +M+ G++GS I Q+ G + Sbjct: 753 LNKIRET--------TANVCMEELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGR 804 Query: 750 --PDGSI---------------IETPITANFREGLNVLQYFISTHGARKGLADTALKTAN 792 PDG I + + ++F GL ++F T G R+GL DTA+KTA+ Sbjct: 805 RAPDGFIDRTLPHFPRKSKTPDAKGFVASSFYTGLTATEFFFHTMGGREGLVDTAVKTAD 864 Query: 793 SGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLR-DRVLGRVTAED-VLK 850 +GY++RRL+ +DL + D+ + + + G D +P R + G + + Sbjct: 865 TGYMSRRLMKALEDLSIQYDETVRNANGSIVQFLYGDDGMDPARMEGKDGFPLNFNRLFL 924 Query: 851 PGTADILVPRNTLLH----EQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARG 906 A N L E+ L+E++ S C F + + + Sbjct: 925 KVKATCPAGENASLSALQIEETVKRLKEHNT------SAEGCSDAFKTNLSGFLEE-CKE 977 Query: 907 HIINKGEAIGVIAAQSIGEPGTQLTMR-TFHIGGAASR-----AAAESSIQVKNKGSIKL 960 N EA+G + + +GE + + +I G S+ S +QVK GSI+ Sbjct: 978 KFKNTREALG-LHGEHVGEENLDIQEKFAKNISGITSKQLQHVNTDHSHLQVKLAGSIRT 1036 Query: 961 SNV----KSVVNSSGKLVITSRNTELKLIDEFGRTKESYKV 997 +++ K G+ ++ + E+ L + E+ +V Sbjct: 1037 NDLLNYRKKCRIQEGQAILQDKKKEI-LQARYQSITENLRV 1076 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 86/486 (17%), Positives = 163/486 (33%), Gaps = 129/486 (26%) Query: 902 DLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLS 961 + I G AIG I A SIGEPGTQ+T++TFH G AS + + Sbjct: 1461 SRYQLKRIEAGTAIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVT-----------LGVP 1509 Query: 962 NVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWD 1021 +K ++N + ++ L E ++ ++ G + G+ + V Sbjct: 1510 RIKEIINGAKRISTPIITAAL----ECNNNVKTARMVKGRIERTTLGQVAKSIKIVLTSR 1565 Query: 1022 PHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIV 1081 + V ++ G ID +V +S R K + +K++ Sbjct: 1566 LALIAVALDMEGIQASQLSIDSN---------------IVRESILRNRRIKLKQQHIKVL 1610 Query: 1082 DAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRV 1141 DA +V G ++ + Sbjct: 1611 DAGKLEVHPQG----------DRSTIH--------------------------------- 1627 Query: 1142 ADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEG 1201 FE K + GI + + + D Y ++ V Sbjct: 1628 ---FELHALKNLLPTVVVKGIETVER--------AVINKDNKVKYNLLVEGTGLQTVMGT 1676 Query: 1202 ERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQML 1261 E V + S+ ++ + G+ A + I+NE+Q G+ I+ +H+ ++ M Sbjct: 1677 EGVIGRETTSNHII---EVQQTLGIEAARKCIINEIQYTMASHGMSIDIRHMMLLADLMT 1733 Query: 1262 RKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLAT--ESF 1319 + ++LGIT+ + +S Sbjct: 1734 ----------------------------------------FRGEVLGITRFGIQKMDKSV 1753 Query: 1320 ISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAP 1379 + ASF++T L A+V+G+ D++ G+ E +I+G + GTG + R+++ Sbjct: 1754 LMLASFEKTADHLFNASVSGRDDKIEGVSECIIMGIPMQLGTGILKVRQRLQQVPELSYG 1813 Query: 1380 AAPQVT 1385 P ++ Sbjct: 1814 LDPIIS 1819 >UniRef50_C5DJG5 DNA-directed RNA polymerase n=3 Tax=Saccharomycetales RepID=C5DJG5_LACTC Length = 1460 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 194/956 (20%), Positives = 356/956 (37%), Gaps = 158/956 (16%) Query: 5 LKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTF-KPERDGLFCARIFG 63 +K + + ++ + S I + S E+ + + KP+ G R+ Sbjct: 1 MKEVVVDIAPKRIKGLEFSALSASDIVAQSKVEISTRDLFDLENGRKPKSGGALDTRM-- 58 Query: 64 PVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSR 123 + C C + GHI+L+ P H+ + K+ Sbjct: 59 -------------GVSSSQAECSTCHGNLASC---HGHFGHIKLSLPVFHVGYFKATIQV 102 Query: 124 IGLLLDMPLRDIERVLYFESYV--VIEGGMTNLERQQILTEEQYLDALEEFG-------- 173 + + + ++ + G+ NL R IL + + Sbjct: 103 LQSICKTCAALLLSEEDKHQFLSELRRPGIDNLRRMGILKKVVDQCKKQRRCLRCGSLNG 162 Query: 174 --DEFDAKMGAEAIQALLK--------------------------SMDLEQECEQLREEL 205 + A G+ +++ L + +LE+ ++ ++L Sbjct: 163 VVKKAAAGSGSASLKILHDTFRWVGKKSAPEKDKWVGDWKTVLAHNPELERYVKKCMDDL 222 Query: 206 NETNSETKRKKLTKRIKLLEAFVQS--GNKPEWMILTVLPVLPPDLRPLVPL-DGGRFAT 262 N + K++ L + +PE I LP P +RP V + D Sbjct: 223 NPLKTLNLFKQVAPEDCELLGIDSTVKSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNE 282 Query: 263 SDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAI-----T 317 DL ++ ++ +K L+ + + LQ AV +++ A+ T Sbjct: 283 DDLTVKLTEIVWTSSLIKAGLEKGISINNMMEQWDYLQLAVAMYINSDSVNPAMMPGGST 342 Query: 318 GSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELF 377 G +P++ +KGKQGRFR NL GKRVD+SGR+V++ P L + + +P ++A L Sbjct: 343 GGKTKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVVSPDPNLSIDEVAVPDRVAKVLT 402 Query: 378 KPFIYGKLELRGLAT------------------------TIKAAKKMVEREEAVVWDILD 413 P + + + L ++ +M D+++ Sbjct: 403 YPEMVTRYNKQKLQQLVINGPNEHPGANYLLKKDEEARRNLRYGDRMKLARNLQYGDVVE 462 Query: 414 EVIR-EHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPL 472 + VL NR P+LHRL I + + + +L+ VC YNADFDGD+M +HVP Sbjct: 463 RHLEDGDVVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQ 522 Query: 473 TLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVLTGPK 531 T EA+ EA LM NN+L+P +GEPII +QD + G Y ++ +D ++ E + L Sbjct: 523 TEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFSRAEFVQLLSMM 582 Query: 532 EAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWM-------IVP 584 L I + G+ V ++ ++ + I P Sbjct: 583 SDGNL-------QFDIPPPSIMKPYYMWTGKQVFSLLIRPNKESPVVINLDAKNKVYIPP 635 Query: 585 KGLP----------------YSIVNQALGKKAIS-----KMLNTCYRILGLKPTVIFADQ 623 K I++ + K + + T R G + ++ Sbjct: 636 KDKSLPNEMSINDGYVVIRGSKILSGVMDKSVLGDGKKHSVFYTILRDFGPQEAAFAMNR 695 Query: 624 IMYTGFAYAARSGASVGIDDMV----IPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERY 679 + + G S+GI+D+ + KK ++ +A A+ + + F G + Sbjct: 696 MAKLCARFLGNRGFSIGINDVTPGFELKNKKEIMVEDAYAKCDALIDLFNKGKLETQPGC 755 Query: 680 NKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQ 739 N+ + A +SK + + ++ + NS +MA+ G++GS + Q Sbjct: 756 NEEQTLEAKIGGLLSKVREE--------VGEVCIKELDNLNSCLIMANCGSKGSTLNVSQ 807 Query: 740 LAGMRGLM-----AKPDGS---------------IIETPITANFREGLNVLQYFISTHGA 779 + + G PDG + + +F GL+ ++ Sbjct: 808 MVAVVGQQIISGNRVPDGFQDRSLPHFLKNSKTPQSKGFVRNSFFSGLSPPEFLFHAISG 867 Query: 780 RKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPL 835 R+GL DTA+KTA +GY++RRL+ +DL D+ + GGD +P+ Sbjct: 868 REGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTIRTSSNGIVQFTYGGDGLDPI 923 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 89/462 (19%), Positives = 162/462 (35%), Gaps = 114/462 (24%) Query: 905 RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVK 964 + G A+G + A SIGEPGTQ+T++TFH G AS + + +K Sbjct: 1078 HKAKVEPGTAVGAVGAHSIGEPGTQMTLKTFHFAGVASMNVT-----------LGVPRIK 1126 Query: 965 SVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT 1024 ++N+S + N L + + +V G + +++ + Sbjct: 1127 EIINASKVISTPIINAVLV----NNNDERAARVVKGRI----------EKTLLSDVAFYI 1172 Query: 1025 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ 1084 V + F++ +D TI + ELT Sbjct: 1173 QDVYKDNMSFLQVK--VDLGTIEKLQLELTV----------------------------- 1201 Query: 1085 GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL 1144 D+ + T + +D V I+ +A++ S K+ P +L Sbjct: 1202 -EDIAVAITRAAKLKIAASDVSIMGKDKVNINVYPEMAKLKSISTSAKE-----PVENEL 1255 Query: 1145 FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV 1204 F + A+ GIV K R VI D E ++ + V + V Sbjct: 1256 FYRMQHLRRAL----PGIV--VKGLPDIARAVINIKDDGS-RELLVEGYGLREVMTTDGV 1308 Query: 1205 ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 1264 ++ ++ + G+ A IV E+ G+ ++ +H++++ M Sbjct: 1309 IGMKTKTN---HILEVFSVLGIEAARTSIVGEIDYTMSNHGMSVDPRHVQLLGDVMT--- 1362 Query: 1265 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLAT--ESFISA 1322 Y ++LGIT+ L+ +S + Sbjct: 1363 -------------------------------------YKGEILGITRFGLSKMRDSVLQL 1385 Query: 1323 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 ASF++TT L +AA K+D + G+ E +I+G+ + GTG Sbjct: 1386 ASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTMSIGTGAF 1427 >UniRef50_B3RW43 DNA-directed RNA polymerase n=1 Tax=Trichoplax adhaerens RepID=B3RW43_TRIAD Length = 941 Score = 587 bits (1512), Expect = e-165, Method: Composition-based stats. Identities = 212/1008 (21%), Positives = 364/1008 (36%), Gaps = 155/1008 (15%) Query: 14 TEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFK-PERDGLFCARIFGPVKDYECLC 72 ++ + L S + ++ + V T + P G+ R+ Sbjct: 12 AKKLSHVTFGLFSSNDVQRQAHIRVVSKNLYGEDTQRSPVSYGVLDRRMGTS-------- 63 Query: 73 GKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPL 132 + CE C + G+++LA P H F K+ + +L Sbjct: 64 -------SKNKSCETCRKGLADC---VGHYGYLDLALPVFHCGFYKATIT----ILQCIC 109 Query: 133 RDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAI------- 185 + RVL + + R + + + + E + AI Sbjct: 110 KKCSRVLLSPADYDQNLQIATRTRLGLQSRKALQKKVHEKCRKMAVCPSCGAINGIVKKA 169 Query: 186 ------------------------QALL-----KSMDLEQECEQLREE-LNETNSETKRK 215 Q LL + DLE +E LN Sbjct: 170 GSFKIIHEKHRLNKKLSSIAISQTQDLLQDAVESNKDLENFVASKSQEILNPLLVLKLFS 229 Query: 216 KLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGR-FATSDLNDLYRRVIN 274 ++ LL + +PE +I+ L V P +RP V D DL +I Sbjct: 230 GMSDEDCLLVGMKPNNGRPEDLIIERLLVPPLCIRPSVMTDSQMGSNEDDLTMKLTEIIL 289 Query: 275 RNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGK 334 ++ + R A I+ LQ V +++ G RP++ +KGK Sbjct: 290 ISDYINRSRQNGAKIQILMELWDNLQIHVSLYINSETSGLPYGSQPNRPIRGFCQRLKGK 349 Query: 335 QGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI 394 GRFR NL GKRVDYS R+VI+ P LR+ + +P +A+ L P + +R L I Sbjct: 350 SGRFRGNLSGKRVDYSTRTVISPDPNLRIDEVAIPYPVAMTLTYPQKVCRANIRFLKKLI 409 Query: 395 KAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVC 454 V+ + +R++ NR L + ++ + + + VC Sbjct: 410 LNGADKHPGANFVMEE--KTKLRKYLKYGNRGKIAKDL-----KAKIMPNRTFRFNECVC 462 Query: 455 AAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT 514 +NADFDGD+M +H+P T EA+ EA LM S +N+++P +GEP+I QD + G Y +T Sbjct: 463 TPFNADFDGDEMNIHLPQTEEARAEALVLMQSKSNMVTPRSGEPLIAAIQDFITGAYLLT 522 Query: 515 RDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTV 574 + V + + S L S A ++ + + + Sbjct: 523 QKD--------VFLDRAKVSQFCSSMLDSRTASTEIDLP---------VPSIIKPVQLWT 565 Query: 575 GRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAAR 634 G+ ++ ++ +L+ + + D+ G + Sbjct: 566 GKQVISALLSPLDVVFAFCV---------LLDVVFH--NGEHICGVLDK-STLGSGSRSN 613 Query: 635 SGASVGIDD----MVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAAN 690 G S+GI D + + K E++ + + + F+ G + + A+ Sbjct: 614 RGFSIGISDVTPEINVINGKRELVKNGYDKCDQHIQDFKDGRLHNQPGF--------TAD 665 Query: 691 DRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAK- 749 + + ++ L ++ N+ MA G++GS I Q+ G A Sbjct: 666 ETLEAVILRELSVIREDAGKICLKELHPSNAPLTMALCGSKGSNINISQMISCVGQQAVS 725 Query: 750 ----PDGS---------------IIETPITANFREGLNVLQYFISTHGARKGLADTALKT 790 P+G + + +F GL ++F T R+GL DTA+KT Sbjct: 726 GRRIPNGFENRALPYFDRDSKVPAAKGFVENSFYSGLEPTEFFFHTMAGREGLVDTAVKT 785 Query: 791 ANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPL----------RDRVL 840 A +GYL RRL+ +DL + D + + G D +P + +L Sbjct: 786 AETGYLQRRLIKSLEDLAIRYDTTVRNSVGGIVQFKYGHDGLDPSLMESKDQPIDYNHLL 845 Query: 841 GRVTAEDVLKPGTADILV---PRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAH 897 + A + + P+N +L+ + + + + SC Sbjct: 846 YHIKAVSYFLRNYINRIASKQPQNRKYGPH-TPILDHHITEIQLKQFIQSCGNK------ 898 Query: 898 CYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAA 945 Y R I G A+G IAAQSIGEPGTQ+T++TFH G A+ Sbjct: 899 -YVR-----AKIEPGTAVGAIAAQSIGEPGTQMTLKTFHFAGVAAMNI 940 >UniRef50_C5KZ53 DNA-directed RNA polymerase n=4 Tax=Perkinsus marinus ATCC 50983 RepID=C5KZ53_9ALVE Length = 1719 Score = 585 bits (1507), Expect = e-165, Method: Composition-based stats. Identities = 271/1402 (19%), Positives = 484/1402 (34%), Gaps = 275/1402 (19%) Query: 25 ASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVI 84 S + I + EV + T K G R+ +R Sbjct: 1 MSGEEISKYGEVEVLNQGYFDPMTHKQLALGCHDPRLGA---------------MNRMSD 45 Query: 85 CEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESY 144 C+ CG + G I+L P H+ + + + LLL + RVL Sbjct: 46 CQTCGKNFRECP---GHFGSIKLVLPVFHVGYFR----HVQLLLSAICKRCGRVLLAPEK 98 Query: 145 VVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKS-----MDLEQE-- 197 + T + + ++ L + + +A +K M L E Sbjct: 99 RSVWLNRTRKATKDVQQQKGVFRKLVDTCKKVRQCPYCDAYNGAVKKGTRGYMTLVHELP 158 Query: 198 --------------------------CEQLREELNETNSETKRKKLTKRIKLLEAFVQSG 231 + E+L + K+ + + Sbjct: 159 KDQAKVEYQQQYSDAVNNNPEIGNHLSKVAYEDLTPLHLLPLLAKMPPSDQEMLKLPP-- 216 Query: 232 NKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDII 291 +PE +++T +PV P +RP V + DL+ ++ NN +K L Sbjct: 217 -QPERLVVTHVPVSPVCIRPSVQIGDAGTQEDDLSVQTSDIVATNNNIKATLSRGGTLKQ 275 Query: 292 VRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSG 351 V + + L V ++++ G A +P++S+ +KGK+GRFR NL GKRV++SG Sbjct: 276 VAEQWQWLSAQVALMMNSEATGLAAAAPTTKPIRSICSRLKGKEGRFRGNLSGKRVNFSG 335 Query: 352 RSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELR----------------------- 388 R+VI+ P L + + +P+ A++L P + + + Sbjct: 336 RTVISPDPNLEVTEVIIPQYSAMKLTFPEVVCRTNIDMLRDRVIRGTEGHPGAHIIRLKS 395 Query: 389 GLATTIKAAKKMVERE---EAVVWDILDEVIR-EHPVLLNRAPTLHRLGIQAFEPVLIEG 444 G + KK + E + D+++ ++ VL NR P+LH++ I A ++ Sbjct: 396 GGVKNLAFIKKQIREELAADLQYGDVVERHLQDGDVVLFNRQPSLHKMSIMAHRAKVMPW 455 Query: 445 KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQ 504 + + + VC+ YNADFDGD+M VH+P T EA+ EA ALM NN+++ NGEPI+ +Q Sbjct: 456 RTFRFNECVCSPYNADFDGDEMNVHLPQTQEARAEALALMGVQNNLITSKNGEPIVAATQ 515 Query: 505 DVVLGLYYMT-RDCVNAKGE----GMVLTGPKEAERL----------YRSGLASLHARVK 549 D + + +T RD K + M E L +G + ++ Sbjct: 516 DFLTSAWLLTQRDTFLTKDKIANIAMYFGKAAETLELPPPTIMKPIQLWTGKQLISLMLR 575 Query: 550 VRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAIS----KML 605 S D R ++I ++ LGKK + + Sbjct: 576 PSHKSTVLVNLEMAEKNYSHGDPYFCRNDGYVIF---YNSELIAGNLGKKILGGSKPGLT 632 Query: 606 NTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEK----KHEIISEAEAEV 661 R ++ + G S GIDD+ + K E ++E A V Sbjct: 633 FVLIRDNSPAVAAACLGRLSKLSARWLGTRGMSFGIDDVTASPEIEAFKKEQVAEKYAYV 692 Query: 662 AEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNS 721 E E+++ G + N + A N + K + D E+ FN Sbjct: 693 DEKIEEYRKGKLPLKPGCNAEQTLEAVINGELGKIRN--------VVGDRLEKVLPRFNK 744 Query: 722 IYMMADSGARGSAAQIRQLAGMRGLMAKPDGSI--------------------IETPITA 761 +MA G++GS + Q+ G I + Sbjct: 745 PRIMAQCGSKGSPINLSQMIVCLGQQNVGGQRIQNGFVNRTLPHFKKFSKTPQSRGFVED 804 Query: 762 NFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIM 821 +F GLN +YF T G R+GL DTA+KTA +GY+ R+L+ +DL + D Sbjct: 805 SFFSGLNPFEYFFHTMGGREGLVDTAVKTAETGYMQRKLIKALEDLGLKYDMTVRTSDGT 864 Query: 822 MTPVIEGGDVKEPLRDRVLGRVTAED---------VLKPGTADILVPRNTL--LHEQWCD 870 + + G D P + + V K T ++ + + L + Sbjct: 865 VVQFVFGDDGLNPAMMEGKSKPLNFEHTMNHVQHVVEKHHTREVALLPSEYRALTNELIQ 924 Query: 871 LLEENSVDAVKVRSVVSCDTDFGVCAHCYGR-DLARGHIINKGEAI-------------- 915 +++ + S+ + + G + G + Sbjct: 925 QVDQEVKSICPLTSLDTSRFTGDLTEFIGGMASEMEKERVKVGLPVDDRVRDDPRESTLC 984 Query: 916 ----GVIAAQ--------------SIGEPG---------------TQLTMRTFHIGGAAS 942 + AQ ++ EPG TQ+T++TFH G AS Sbjct: 985 DLSCALTEAQLRSFMTTCARKYRRALMEPGEAVGATSAQSIGEPATQMTLKTFHFAGVAS 1044 Query: 943 RAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAV 1002 + + +K ++N++ + + +L E +V A Sbjct: 1045 MNVT-----------LGVPRIKEIINAAKHISTPIISCKL----------EQDRVEAAAF 1083 Query: 1003 LAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVL 1062 + K ++ G+ + + + + E SG V + G+T+ R +LT L Sbjct: 1084 MVKSKIQRTLLGD-ICEY----IKQVYEPSG-VYLIVKLCGETLRRMQLDLTMDELKEAL 1137 Query: 1063 DSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLA 1122 + GG +RP I P A+ S G TL Sbjct: 1138 CAKGALPGGLKIRPE-----------CIESRGKLKLAIRPAGAVD--------SRGRTLP 1178 Query: 1123 RIPQESGGTKDITGGLPRVADL-FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVD 1181 P L FE + + A + G+ K R+V+ + Sbjct: 1179 ----------------PNPETLWFEVQALRNALPQAPVKGL-------KQCSRVVVNKEE 1215 Query: 1182 GSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPH--DILRLRGVHAVTRYIVNEVQD 1239 D ++ I + + V+++ + H ++ + G+ A + I++E+ Sbjct: 1216 AKDGSKDTIYSLLVEGYGLQDVMGIEGVVAEKSVSNHVLEVQSVLGIEAARKSIMSEIDV 1275 Query: 1240 VYRLQGVKINDKHIEVIVRQML 1261 + + G+ ++ +HI QML Sbjct: 1276 IMKHFGMSVDYRHI-----QML 1292 >UniRef50_A7AP17 DNA-directed RNA polymerase n=1 Tax=Babesia bovis RepID=A7AP17_BABBO Length = 1541 Score = 585 bits (1507), Expect = e-165, Method: Composition-based stats. Identities = 198/929 (21%), Positives = 352/929 (37%), Gaps = 144/929 (15%) Query: 2 KDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARI 61 + + +K+ + ++ + ++I S ++ K E + +P G+ ++ Sbjct: 77 SNKKELVKSSVTRCTIEGVQFDVMGSEVISRISELQIMKRELYDNSNNEPLPLGVLDLKL 136 Query: 62 FGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLP 121 G +C CG ++ Q GHI+L P HI F K Sbjct: 137 ---------------GSNRGGSLCHTCGKDLKQC---VGHWGHIQLQMPVFHIGFFKYTI 178 Query: 122 SRIGLLLD------MPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDE 175 + + +P ++R L + + + L +QI+ E + + Sbjct: 179 QILYCICKRCAFLLLPENTVKRFLEAHRRRMDDPLLRPLLFKQIMQECRKITKCPR---- 234 Query: 176 FDAKMGAEAIQALLK-----SMDLEQECEQLR----EELNETNSETKRKKLTKRIKLLEA 226 +A+ G I+ ++K M L + + E + K+L + I A Sbjct: 235 CEARQGV--IRRIVKPVMDQFMKLRHVIKYKEGGKLHSIEEDLNPLVVKQLFESIDPTHA 292 Query: 227 FVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLA 286 + + PE +++ L V P +RP V ++G DL ++ ++ NN K + Sbjct: 293 KILNVVSPEKLLINNLAVPPSCIRPSVTIEGQGTTEDDLTCIFSDIVELNNGWKNQIRNG 352 Query: 287 APDIIVRNEKRMLQEAVDALLDNGRRGRA---ITGSNKRPLKSLADMIKGKQGRFRQNLL 343 + + LQ L++ + ++ + +P + + +KGK+GRFR NL Sbjct: 353 SQISQFILSWQCLQLQCTRLINAEAPAVSQLLVSRNISKPGRGVCQRLKGKEGRFRGNLS 412 Query: 344 GKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLEL---------------- 387 GKRVD+S R+VI+ P + + + +P+ +A++L P + Sbjct: 413 GKRVDFSARTVISPDPNVGVDEVVVPEWIAMKLTFPEEVTDSNISIMKKAVLNGVSIWPG 472 Query: 388 -------RGLATTIKAAKKMVEREEAVVWDI-LDEVIREHPVLLNRAPTLHRLGIQAFEP 439 G +++ A + V D+ L + VL NR P+LHR+ I A Sbjct: 473 ATYVKKQNGGKCSLQYANPKYMSDNLTVGDVVLRHLWNGDVVLFNRQPSLHRMSIMAHRV 532 Query: 440 VLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPI 499 ++ G + + VC YNADFDGD+M +H+P T EA+ EA LM +N+ +P NGEP+ Sbjct: 533 RVMPGSTFRFNECVCQPYNADFDGDEMNLHLPQTYEAKAEALHLMSVLHNLTTPRNGEPL 592 Query: 500 IVPSQDVVLGLYYMT-RDCVNAKGEG-------------MVLTGPKEA-ERLYRSGLASL 544 I QD + Y +T +D + E + L P + +G Sbjct: 593 IAAVQDFLCASYLLTSKDRFLTRAEFCQACCHFTDAASQVDLPPPAIIYPVMLWTGKQVF 652 Query: 545 HA--------RVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQAL 596 +A +V V E++ V K + G I +V+ AL Sbjct: 653 NALLRPNRRCKVVVNFECKEREFQDPPVGKNACMCPKDGYVIFH-------NSELVSGAL 705 Query: 597 GKKAISKMLNTCYRIL----GLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEK--- 649 GKKA+ + + L ++ + A G ++G+DD+ + Sbjct: 706 GKKALGASKDGLFYQLLTRNNRYIAAECMLRVSKLTSRWLAGFGMTIGLDDVRPGPELLH 765 Query: 650 -KHEIISEAEAEVAEIQEQFQ-----SGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQT 703 K E+++E A+V F G +V + + KA NL+ Sbjct: 766 HKQELLNEGYAKVTAAINNFDTLQALPGCTREETLELQVKRVLDELRNEAGKACNSNLRA 825 Query: 704 ETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSI--------- 754 + N +M +SGA+G+ I Q+ + G I Sbjct: 826 D---------------NKPLIMFNSGAKGALINIAQMVALVGQQNVSGQRIENGFIGRTL 870 Query: 755 -----------IETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDV 803 + +F GL ++F T R+GL DTA+KT+ +GY+ RRL+ Sbjct: 871 PHFDIGCMDAKSRGFVANSFFSGLGPEEFFFHTMSGREGLIDTAVKTSETGYMQRRLMKA 930 Query: 804 AQDLVVTEDDCGTHEGIMMTPVIEGGDVK 832 + L V D + + G D Sbjct: 931 LEVLAVCYDHTVRTTDGHVVQFLYGDDGL 959 Score = 85.9 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 61/146 (41%), Gaps = 38/146 (26%) Query: 1219 DILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGE 1278 ++ ++ G+ A I++E+Q + I+ ++++++ M GE Sbjct: 1423 EVAKVLGIEAARSVIISEIQKCMDAYSIDIDQRYMKLLGDVMT-------------FRGE 1469 Query: 1279 QVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVA 1338 + +R GI K S + ASF+ET L EAAV Sbjct: 1470 VIGINRF----------------------GIQK---MRASTLMLASFEETNEHLFEAAVH 1504 Query: 1339 GKRDELRGLKENVIVGRLIPAGTGYA 1364 RD ++G+ E +I+G+ +P GTG Sbjct: 1505 RLRDPIKGVSECIIMGKQVPLGTGAF 1530 Score = 77.4 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 46/185 (24%), Positives = 77/185 (41%), Gaps = 13/185 (7%) Query: 873 EENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTM 932 E ++ VK + +S F C + I GEAIG + AQSIGEPGTQ+T+ Sbjct: 1161 IEFRLNMVKCQHRLSVRQIFEFVRCC--WKDYQRAICVPGEAIGALGAQSIGEPGTQMTL 1218 Query: 933 RTFHIGGAASRAAAESSIQVKNK----GSIKLSNVK-SVVNSSG---KLVITSRNTELKL 984 +TFH G AS ++K +I+ ++ ++N+ L++ +R + L Sbjct: 1219 KTFHFAGVASMNVTLGVPRIKEIINASSTIQTPIIEVPLINNKDFEYALMVKARIEKTTL 1278 Query: 985 IDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPH-TMPVITEVSGFVRFTDMIDG 1043 KE + P GA L E + + + D +I + S +F Sbjct: 1279 GQVCSDIKEIFG-PTGAQLRVTLNENLIK-KLLLQIDAFKVREIILDNSVMTKFKLGKHA 1336 Query: 1044 QTITR 1048 ++ Sbjct: 1337 ISVVN 1341 >UniRef50_B3PM77 DNA-directed RNA polymerase subunit beta' n=2 Tax=Mycoplasma RepID=RPOC_MYCA5 Length = 1464 Score = 581 bits (1498), Expect = e-164, Method: Composition-based stats. Identities = 295/683 (43%), Positives = 413/683 (60%), Gaps = 91/683 (13%) Query: 9 KAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDY 68 A +++ I +ALA+PD + SWS GEV KPETINY+++KPER GLF IFGP+ DY Sbjct: 7 YATLDSDKIAKISLALATPDDVESWSHGEVTKPETINYKSYKPERGGLFDEIIFGPMIDY 66 Query: 69 EC-LCG-KYKRLKH-----RGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLP 121 C +CG KYK++ + +C++ VE+ RR MGHI+L SP H WF K Sbjct: 67 RCPICGHKYKKINEGSFCSKTELCKQEKVEILPKISRRNHMGHIKLNSPVVHFWFFKVDH 126 Query: 122 SRIGLLLDMPLR-----------DIERVLYFESYVVIEGGMTNLERQQILTEEQ-----Y 165 S I LLD+ + D+E ++Y++S++V+E G + ++ + Y Sbjct: 127 SIIFKLLDLTVAGRPNTEPVRRIDLENLIYYKSHIVLESGGIKALPKNLIIDINVAAVIY 186 Query: 166 LDALEEFGDEFDAKM--------------------------------------------- 180 DALEE F+ Sbjct: 187 KDALEELITRFEPGTEDYEDIRETLDNLIEKASSKIGQDYGIDFYELNEVIEHYSEAKIG 246 Query: 181 -GAEAIQALLKSMDLEQECEQLREELNETNSE-------------TKRKKLTKRIKLLEA 226 GA+AI+ LLK++DL++E E + ++ + N E R+KL KR++++ A Sbjct: 247 TGAQAIEYLLKNLDLQKEKELVSAKIKKINDEEIMSGAKIASTSRQTREKLYKRLQVINA 306 Query: 227 FVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLA 286 F++S +P M++ LPV+P DLRPL+ LDGGR +TSD+N+LYRRVI RNNRLK+ + Sbjct: 307 FIESKQEPTSMLIYNLPVIPADLRPLIQLDGGRHSTSDINELYRRVIIRNNRLKQWQEKD 366 Query: 287 APDIIVRNEKRMLQEAVDALLDNGRR-GRAITGSNKRPLKSLADMIKGKQGRFRQNLLGK 345 AP ++++NE RM+QEAVDAL+DN RR + + RP KS++D + GK+GRFRQNLLGK Sbjct: 367 APTLVIQNELRMIQEAVDALIDNARRSPNPVLSKDNRPFKSISDALTGKKGRFRQNLLGK 426 Query: 346 RVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREE 405 RVDYSGRSVI VGP L++HQCG+P++MA +LF+P+I +L + +ATTIK AKKM+E + Sbjct: 427 RVDYSGRSVIVVGPNLKMHQCGIPREMAAKLFEPWIIHRLIEKEVATTIKNAKKMLEDQN 486 Query: 406 AVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQ 465 V+W + EVI+ VLLNRAPTLHRL IQAFEPVL+ GKAI+LHPLVC +NADFDGDQ Sbjct: 487 PVIWPHIAEVIKGRLVLLNRAPTLHRLSIQAFEPVLVRGKAIRLHPLVCTPFNADFDGDQ 546 Query: 466 MAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGM 525 MAVHVP++ A LE+R LM++ NIL +GEPII PSQD++LG+YY+T + A GEG Sbjct: 547 MAVHVPISERALLESRELMLANKNILGTKDGEPIINPSQDMILGIYYLTIEEPGALGEGR 606 Query: 526 VLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKD-----TTVGRAILW 580 + + R Y + SLHARV + I E+ N ++ A S + +TVG+ I Sbjct: 607 IFDNYEHMIRAYEAKKVSLHARVALPI---EEVKNSKIKAFASRESQRYIISTVGKFIFN 663 Query: 581 MIVPKGLPYSIVNQALGKKAISK 603 I PK P+ N+ ++ + Sbjct: 664 NIFPKSFPFIFDNKVTEATSLEQ 686 Score = 340 bits (871), Expect = 3e-91, Method: Composition-based stats. Identities = 146/448 (32%), Positives = 230/448 (51%), Gaps = 42/448 (9%) Query: 600 AISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEA 659 +++L+ + D I GF Y++ SG + I D++ +KK E I+E +A Sbjct: 809 EKAEILDDVWFRY-TNMVASILDDIKDLGFKYSSLSGITFAISDILETDKKPEYIAEGDA 867 Query: 660 EVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSF 719 +A++++ + GL++ +RY+ I W +V + ++ Sbjct: 868 YIAQLKQYYNDGLISDDDRYSLTIKKWTDIKAKVQGELQQIIKEN-------------PR 914 Query: 720 NSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSI-------------IETPITANFREG 766 N I M +SGARG+ + QLAGMRGLMA S +E P+ ++F EG Sbjct: 915 NPIITMINSGARGNISNYVQLAGMRGLMANNTKSTRADVKNERVVRSTVEIPVKSSFIEG 974 Query: 767 LNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVI 826 L +++ STHG RKG DTAL TA SGYLTRRLVDVAQ++VV +++CG+ G ++ ++ Sbjct: 975 LTAFEFYSSTHGTRKGATDTALNTAKSGYLTRRLVDVAQNIVVRKENCGSDYGHIVRDIV 1034 Query: 827 E--GGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRS 884 + G + PL++R++GR + ++ T L RNTL+ ++ + + V V++RS Sbjct: 1035 DTKNGQIIVPLKERIIGRYANKPIIGEKTKQELAKRNTLITDKLAQKIIDEGVKEVEIRS 1094 Query: 885 VVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRA 944 V+ C+T GVC C+G+DLA ++N GEA+G+IAAQSIGEPGTQLTMR FH GG A Sbjct: 1095 VLGCNTKNGVCKMCFGKDLATNRVVNIGEAVGIIAAQSIGEPGTQLTMRVFHTGGVAGAE 1154 Query: 945 AAESS----IQVKNKGSIKLSNVKSVVNSSGKLVI-----TSRNTELKLIDEFGRTKESY 995 I++ + + G++V + N+ L I KE+ Sbjct: 1155 DITGGFPRLIELIDAHEQPWGRPAVISPYEGEIVEDLVEDKNVNSHLLTIKVVNSKKETV 1214 Query: 996 K----VPYGAVLAKGDGEQVAGGETVAN 1019 V L G+ V G+ ++ Sbjct: 1215 NKKVHVYTTKKLRVKVGDHVKVGQKLSE 1242 Score = 245 bits (626), Expect = 7e-63, Method: Composition-based stats. Identities = 102/372 (27%), Positives = 170/372 (45%), Gaps = 19/372 (5%) Query: 1005 KGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDS 1064 D G+ + +P+ + G +I +T T ++ + Sbjct: 1030 VRDIVDTKNGQII-------VPLKERIIGRYANKPIIGEKTKQELAKRNTLITDKLAQKI 1082 Query: 1065 AERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDTLAR 1123 + ++R L G + G D+ + V + I G L Sbjct: 1083 IDEGVKEVEIRSVLGCNTKNGVCKMCFGKDLATNRVVNIGEAVGIIAAQSIGEPGTQLTM 1142 Query: 1124 IPQESGGT---KDITGGLPRVADLFEARRPK--EPAILAEISG-IVSFGKETKGKRRLVI 1177 +GG +DITGG PR+ +L +A PA+++ G IV E K ++ Sbjct: 1143 RVFHTGGVAGAEDITGGFPRLIELIDAHEQPWGRPAVISPYEGEIVEDLVEDKNVNSHLL 1202 Query: 1178 TPVDGSDPYEEM-----IPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRY 1232 T + E + + ++L V G+ V+ G +S+GP ++L L V Y Sbjct: 1203 TIKVVNSKKETVNKKVHVYTTKKLRVKVGDHVKVGQKLSEGPVIVKELLELTDTITVQNY 1262 Query: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANREL 1292 ++ E+Q +YR+QG+ I+DK+IE+I+RQM+ K I + G S F G V+ + N L Sbjct: 1263 LLKEIQKIYRIQGIAISDKYIEIIIRQMMSKIVIHDPGDSKFFAGAIVDIFDYQEENATL 1322 Query: 1293 EANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVI 1352 + K A + G + L ++SF++AAS+QET+++L AA++ + D L GLKEN+I Sbjct: 1323 LSQRKRPAFGKVVIKGAKQVPLLSDSFLAAASYQETSKILVHAAISSRSDSLSGLKENII 1382 Query: 1353 VGRLIPAGTGYA 1364 VG+ IPAGT Sbjct: 1383 VGKKIPAGTALY 1394 >UniRef50_Q1ACN5 DNA-directed RNA polymerase subunit beta' n=2 Tax=Streptophytina RepID=RPOC1_CHAVU Length = 666 Score = 580 bits (1495), Expect = e-163, Method: Composition-based stats. Identities = 263/549 (47%), Positives = 365/549 (66%), Gaps = 47/549 (8%) Query: 13 KTEEFDAIKIALASPDMIRSWS---------FGEVKKPETINYRTFKPERDGLFCARIFG 63 + + ++I LASP IR W+ GEVK+P T++YR KPE+DGLFC +IFG Sbjct: 3 HQKGYQFLQIGLASPKQIRKWAERILPNGDVVGEVKEPHTLHYRNQKPEKDGLFCEKIFG 62 Query: 64 PVKDYECLCGKYKRLKHRG---VICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120 P+K C CGKY+R+ +G C+KC VE T ++VRR RMG+I L P AH+W+LKS Sbjct: 63 PIKSGRCACGKYERIPEQGEGKKFCKKCWVEFTYSRVRRYRMGYISLGCPVAHVWYLKST 122 Query: 121 PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALE---------- 170 PS I LL L+DIE + Y+ + G + +L ++Y Sbjct: 123 PSHIANLLGQKLKDIESLAYYNHCL----GNPSTNYPTLLFIKKYFQYSSLAWLLHILLC 178 Query: 171 -------EFGDEFDAKMGAEAIQALLKSMDLEQECEQLR------------EELNETNSE 211 E ++ + G +AI+ LL +DL+ ++ R +E ++ Sbjct: 179 FFSFKGFEALEDREIATGGDAIKRLLSELDLQNTIDESRKACEELAYFDPLDEKEAQKAQ 238 Query: 212 TKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRR 271 ++++L +RIK+ F ++ KP+WM+L+ +PVLPPDLRP++ L+ G ATSDLNDLYR+ Sbjct: 239 REKERLVRRIKIASYFQETKIKPQWMVLSTIPVLPPDLRPMIHLNDGPLATSDLNDLYRK 298 Query: 272 VINRNNRLKRLLDL--AAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLAD 329 V+ RN L L AP ++ ++KR++QEAVDAL+DNG G + SN RP KSL+D Sbjct: 299 VLYRNKTLWELRQGIWPAPHSLMISQKRLVQEAVDALIDNGLGGPPMRDSNNRPYKSLSD 358 Query: 330 MIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRG 389 +I GKQGRFRQNLLGKRVDYSGRSVI VGP+L+++QCGLPK MA+ELF+PF+ + + Sbjct: 359 VISGKQGRFRQNLLGKRVDYSGRSVIVVGPHLKIYQCGLPKNMAIELFQPFLIHYMINKK 418 Query: 390 LATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQL 449 LA+ ++ AK +++ + +VW IL EVI++HPVLLNRAPTLHRLGIQAF+P+L+EGKAI L Sbjct: 419 LASNLRVAKSIIQSKHPIVWFILKEVIKKHPVLLNRAPTLHRLGIQAFQPILVEGKAILL 478 Query: 450 HPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLG 509 HPLVCA +NADFDGDQMAVHVPL+ E+Q EAR +M+S N+LSPA G+PI +PSQD++LG Sbjct: 479 HPLVCAGFNADFDGDQMAVHVPLSPESQKEARLIMISNRNLLSPATGDPITLPSQDMLLG 538 Query: 510 LYYMTRDCV 518 LY +T + + Sbjct: 539 LYMLTLEDL 547 >UniRef50_Q4U940 DNA-directed RNA polymerase n=2 Tax=Theileria RepID=Q4U940_THEAN Length = 1648 Score = 579 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 196/1004 (19%), Positives = 360/1004 (35%), Gaps = 137/1004 (13%) Query: 17 FDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYK 76 D+++ + + I S E++ + + KP G +R+ C Sbjct: 87 IDSLQFDVMASSDISRASEIEIEHKQLYLINSRKPCLYGPLDSRLG-------CFLMVIT 139 Query: 77 RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIE 136 ++ ICE CG + GHI+LA P HI F K + + + Sbjct: 140 GCNNKDAICETCGKGYNEC---VGHWGHIKLALPVFHIGFFKYTIQILYCICKKCSSLLL 196 Query: 137 RVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLK-----S 191 + + + + + L + + ++ + I+ ++K Sbjct: 197 SEESIKKFYELHKKAQDDPVLKPLIFKNIVQDCKKISKCPRCQSPQGVIKKIVKPIIDQF 256 Query: 192 MDLEQECEQLR----EELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPP 247 M L+ + + + E + K L + I + + V + PE +I++ LP P Sbjct: 257 MKLKHIVKYKESGKMKTVEEELNPLVVKHLFENIDPVHSKVLNIVHPEKLIISNLPAPPN 316 Query: 248 DLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALL 307 +RP V + DL ++ ++ NN+LK + A +++Q + Sbjct: 317 CIRPSVSVGEEGTTEDDLTCIFSDIVESNNQLKSYIKNGAQTNSFIVHWQIIQYQCTRFI 376 Query: 308 DNGRRGRA---ITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH 364 ++ A ++ +P + + +KGK+GRFR NL GKRVD+S R+VI+ P + + Sbjct: 377 NSDSPALAQLLLSRRVSKPGRGIFQRLKGKEGRFRGNLSGKRVDFSARTVISPDPNVGID 436 Query: 365 QCGLPKKMALELFKPFIYGKLELRGLATTI-----------------------KAAKKMV 401 + +P+ +A L P K + L I + A Sbjct: 437 EVVVPEWIARRLTFPERVTKYNIHVLKKAILNGVSVWPGASYVNKLDGSKCSLRFANPKH 496 Query: 402 EREEAVVWDILDEVI-REHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNAD 460 E V DI++ + V+ NR P+LHRL I ++ G + + VC YNAD Sbjct: 497 MSENLQVGDIVERHLWNGDIVIFNRQPSLHRLSIMCHRARVMSGSTFRFNECVCLPYNAD 556 Query: 461 FDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVN 519 FDGD+M +H+P T EA+ EA L+ N+ +P NGEP+I P QD + Y +T +D Sbjct: 557 FDGDEMNLHLPQTYEARAEALHLLSVLKNLTTPRNGEPLIAPVQDFLCASYLLTSKDMFL 616 Query: 520 AKGEGMV-------------LTGPKEAERL-YRSGLASLHARVKVR-------------- 551 + E L P + +G +K Sbjct: 617 NRSEFSQVISYFTDGTIQVDLPPPSIIHPVTLWTGKQVFSVLIKPNNKSKVMVNIRVRER 676 Query: 552 ----ITEYEKDANG--------------------ELVAKTSLKDTTVGRAILWMIVPKGL 587 +Y K+ N + V+ L D +I L Sbjct: 677 EYTDPNQYYKNLNKDNLEGGKVENTKSQTSSNDVKPVSFMKLDDCMCPSDGYVVIYKSEL 736 Query: 588 PYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMV-- 645 + + + K + ++ + + G ++G+DD+ Sbjct: 737 MCGSLGVRSLGASKGGLFYELMLKNSPKISSECMLRVSKLSSRWLSEFGMTIGLDDVTPS 796 Query: 646 --IPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQT 703 + +KK +++ + + V E FQ G + +++ K+++D L+ Sbjct: 797 KELIDKKKQLLLDGYSRVDEAISNFQFLQPYPGCTREQTLELQ-------VKSILDELRN 849 Query: 704 ETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSI--------- 754 E+ N +M +SGA+G+ I Q+ G I Sbjct: 850 ES---GKICTSLLNPDNKPLIMFNSGAKGALINIAQMVACVGQQNVSGQRIQNGFIGRTL 906 Query: 755 -----------IETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDV 803 + +F GL ++F T R+GL DTA+KT+ +GY+ RRL+ V Sbjct: 907 PHFTMGCKDAKSRGFVANSFFTGLEPEEFFFHTMSGREGLIDTAVKTSETGYMQRRLMKV 966 Query: 804 AQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVL--GRVTAEDV--LKPGTADILVP 859 +DL V D + + G D L + + + + + P ++ Sbjct: 967 MEDLSVCYDYSVRTSDGQIVQFLYGDDGLSSLSKSCFTNLKSSLDHIKHINPINKQLIFT 1026 Query: 860 RNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDL 903 + + + + S K++ + C L Sbjct: 1027 SSHIDPTHLDNQEQGPSKRRNKLKRSGTNTNKERKCTQDSKWIL 1070 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 87/466 (18%), Positives = 164/466 (35%), Gaps = 106/466 (22%) Query: 899 YGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSI 958 Y + + GEAIG + +QSIGEP TQ+T++TFH G AS + Sbjct: 1283 YSWKDYQKSLCEPGEAIGALGSQSIGEPATQMTLKTFHFAGVASMNVT-----------L 1331 Query: 959 KLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVA 1018 + ++ ++N++ + +I+ K SY+ L ++ T+ Sbjct: 1332 GVPRIQEIINATSLIATP-------IIEVPLEDKTSYEFA----LKVK--SKIEK-TTLG 1377 Query: 1019 NWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPAL 1078 + + T + + FT ++ I + E+ L++ D + Sbjct: 1378 QICLNIKQLYTPQNSKLLFT--LNRNLIEQLHLEINSNKFLIIPDFYTHHIYTYL---DI 1432 Query: 1079 KIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGL 1138 I V IP + S G I L Sbjct: 1433 IIETGSFGKVKIPKNSVY-------------------------------SIGDWQICIEL 1461 Query: 1139 PRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNV 1198 P F ++ A+++ ++ +V G ++ + + Y+ + + V Sbjct: 1462 PSNQQHF----FQQNALISGLTQLVVAGYKSIKRAVIKRESTPQGPNYQIAVEGYGLQEV 1517 Query: 1199 FEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVR 1258 V V S+ ++ ++ G+ A I++E+Q + I+ ++++++ Sbjct: 1518 MGSYGVMSSAVKSN---HVSEVAKVLGIEAARSVIISEIQKCMDAYSIDIDCRYMKLLGD 1574 Query: 1259 QMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATES 1318 M GE V +R GI K S Sbjct: 1575 VMT-------------FRGEVVGINRF----------------------GIQK---MRSS 1596 Query: 1319 FISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 + ASF+ET L EAA+ +RD ++G+ E +I+G+ I GTG Sbjct: 1597 ALMLASFEETNDHLLEAALHHRRDPIKGVSECIIMGKPISLGTGSF 1642 >UniRef50_Q5CWY0 DNA-directed RNA polymerase n=3 Tax=Cryptosporidium RepID=Q5CWY0_CRYPV Length = 1871 Score = 577 bits (1486), Expect = e-162, Method: Composition-based stats. Identities = 195/904 (21%), Positives = 338/904 (37%), Gaps = 111/904 (12%) Query: 13 KTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLC 72 K +A++ + D I + EV E T P + G+ +R+ D + Sbjct: 33 KRRNIEAVEFSAMGKDEIARSAHMEVLHREIYRPMTNIPLQGGVLDSRLGAHRADAQ--- 89 Query: 73 GKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPL 132 C CG + G+I+L P H+ + K + +L Sbjct: 90 ------------CSSCGGTLKTC---GGHWGYIDLQQPVFHVGYFK----HLYGVLCCIC 130 Query: 133 RDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKS- 191 + L + L E + + Q L+ Sbjct: 131 KSCGAFLLKGEEKRQHLARLKQSYSIAHSYRLQFRKLVERCKKVKTCPRCMSQQGQLRRT 190 Query: 192 --------MDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLP 243 M L + +E E + + L +R+ + + KP ++++ LP Sbjct: 191 IRPTLDQFMKLTHTIKVDGKEYVEDLTPIFVQTLLERVPYQDLDILETFKPGNLLISRLP 250 Query: 244 VLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAV 303 V P +RP V + DL + + + NN +K + + LQ Sbjct: 251 VPPNCIRPSVTMGESGSNEDDLTVILSEITDLNNIIKSQMKSGFQTFQLLGNWEFLQLQC 310 Query: 304 DALLDNGRRGRAITGSNK---RPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360 L++ G ++K + + + +KGK+GRFR NL GKRVD+SGR+VI+ P Sbjct: 311 TRLINADAPGVNQLLASKNIPKAGRGVCQRLKGKEGRFRGNLSGKRVDFSGRTVISPDPN 370 Query: 361 LRLHQCGLPKKMALELFKPFIYGKLELRGLATTI-----------------------KAA 397 + + + +P +A +L P + + L + + A Sbjct: 371 IEVDEVVVPMIIAKKLTYPERVNAINIDSLREAVLNGHDIWPGACYVYKSNGSKSSLRYA 430 Query: 398 KKMVEREEAVVWDILDEVIR-EHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAA 456 + V E + DI++ ++ VL NR P+LHRL I + + V++ + + + CA Sbjct: 431 NRRVVSERLEIGDIVERHMKTGDIVLFNRQPSLHRLSIMSHKVVVMPWRTFRFNECACAP 490 Query: 457 YNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-R 515 YNADFDGD+M +H+P A+ E++ LM NN+++P NGEP+I +QD +LG+Y +T R Sbjct: 491 YNADFDGDEMNLHLPQNELARSESKHLMGLMNNLVTPRNGEPLIAATQDFLLGMYVLTGR 550 Query: 516 DCVNAKGEG-------------MVLTGP---KEAERLYRSG----LASLHARVKVRITEY 555 D + + M L P K E + ++ K RI Sbjct: 551 DIFLTRDQFSQYCCHFSNGQIPMELPPPTILKPVELWTGKQVFNMILRPNSNEKERIDVS 610 Query: 556 EKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLK 615 + + +K+ LKD + + + L +I + LG + + K Sbjct: 611 FELKERDYDSKSDLKDLCPNEGYVVVRHSELLAGAIGKKVLGGGSKEGLFFYILLENNAK 670 Query: 616 PTVIFADQIMYTGFAYAARSGASVGIDDMVIPEK----KHEIISEAEAEVAEIQEQFQSG 671 + +I Y A G ++GIDD+ + K ++ + V + ++ G Sbjct: 671 KSSECMGRISRFVSRYLANKGMTIGIDDVTPNAELLVAKKNLLEDGYQRVQDEINSYEKG 730 Query: 672 LVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGAR 731 +T + + K ++D+++ E N +M SGA+ Sbjct: 731 KLTPHPGLS-----LEDTLELKVKKILDDIRNE---AGKASHISLPPSNKPLLMYLSGAK 782 Query: 732 GSAAQIRQLAGMRGLMAKPDGSI--------------------IETPITANFREGLNVLQ 771 G I Q+ G I + +F GL + Sbjct: 783 GQLINIAQMVACVGQQNVAGQRIQNGFTNRTLPHFKMNCVDGRSRGFVGNSFFSGLQPDE 842 Query: 772 YFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDV 831 +F T R+GL DTA+KTA +GY+ RRLV +DL + D + I G D Sbjct: 843 FFFHTMSGREGLVDTAVKTAETGYMQRRLVKALEDLCIKYDQTVRTSDGQIIQFIYGDDG 902 Query: 832 KEPL 835 P+ Sbjct: 903 LNPM 906 Score = 191 bits (484), Expect = 3e-46, Method: Composition-based stats. Identities = 106/469 (22%), Positives = 195/469 (41%), Gaps = 97/469 (20%) Query: 901 RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL 960 I GEA+G IAAQSIGEPGTQ+T++TFH G AS + + Sbjct: 1450 WSKYMKAITEPGEAVGAIAAQSIGEPGTQMTLKTFHFAGVASMNVT-----------LGV 1498 Query: 961 SNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANW 1020 +K ++N++ K++ +L+ +F ++ G+++ E V+ E + + Sbjct: 1499 PRIKEIINAATKILTPIIEAKLENDSDFNYA----QIVKGSIVKTLLNEVVSDIEEL--Y 1552 Query: 1021 DPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKI 1080 P+ + + ++ + I G + +++ V DS + G + LK+ Sbjct: 1553 SPNGVFININLN-----EETIKGHYLD--------INAYTVRDSI--VSHGPISKIKLKL 1597 Query: 1081 VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPR 1140 D I D+ L G I Q+ +G +G + G+ Sbjct: 1598 ED-------IQVLDLWKLSILIGGGISQIGSSSNNING---------TGNVNTLNTGIGN 1641 Query: 1141 VADL-FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVF 1199 ++ F+ + K+ +SGI G +R VI D DP Sbjct: 1642 TMNVYFQTQLLKKGLQNVVVSGI-------PGIKRSVIRQDDKEDPI------------- 1681 Query: 1200 EGERVERGDVISDGPEAPHDILRLRGVHAV--TRYIVNEVQDVYRLQGVKINDKHIEVIV 1257 GE+ + + +G + +L+L G++ + T + N V +V + G++ K VI+ Sbjct: 1682 TGEKRKCYSLAVEG----YGLLKLMGINGIIGTTTVSNHVMEVREVLGIEAARK---VII 1734 Query: 1258 RQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLAT- 1316 +++ ++A S D ++ +++ + T+ D+LGI++ + Sbjct: 1735 QEVQ---KCMDAYSMD------IDLRHIQLLADIM--------TFRGDVLGISRFGIQKM 1777 Query: 1317 -ESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 S + ASF+ET L EAA + D + G+ E VI+G+ I GTG Sbjct: 1778 RTSTLMLASFEETNEHLFEAAFQNRVDPVFGVSECVIMGKPIKIGTGSF 1826 >UniRef50_C4M5C2 DNA-directed RNA polymerase n=4 Tax=Entamoeba RepID=C4M5C2_ENTHI Length = 1636 Score = 575 bits (1483), Expect = e-162, Method: Composition-based stats. Identities = 189/900 (21%), Positives = 350/900 (38%), Gaps = 109/900 (12%) Query: 13 KTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLC 72 +T+ IK L S + IR ++ + +++ KP GL R+ GP Sbjct: 7 ETKRVKQIKFTLLSSEQIRKMGVCKITESTSVSSD-GKPVLGGLADPRM-GP-------- 56 Query: 73 GKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPL 132 +G C+ C T+ G+IEL P + ++K + + + + Sbjct: 57 ------FEKGEECQTCRGTRTECP---GHFGYIELTQPVYNAIYMKYILHVLKCVCPI-C 106 Query: 133 RDIERVLYFESYVVIEGGMTNLERQQILTEEQYLD--ALEEFGDEFDAK----------- 179 + I + G L+ + Y L E + D Sbjct: 107 KRIYCHGDERVKNIKSTGEERLKEIYEFIHKNYKACGVLSEKKKDHDKHQNNEEEEEQNP 166 Query: 180 MGAEAIQALLKSMDLEQECEQLREELNETNSETKRK-----KLTKRIKL----LEAFVQS 230 + L + E + E R+ +TN E K + K + + F Sbjct: 167 CNGPIVDYELPKLKSENKLEIRRKNGIKTNEENDFKPRDALAIFKDMTDEDVRVLGFDPI 226 Query: 231 GNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDI 290 P++MI T++PV PP +RP + +G + + DL LY VI N RLK + + Sbjct: 227 DCHPKFMIFTLIPVPPPCVRPSIVSEGAKESKDDLTVLYENVITANERLKE-ENQKCEGV 285 Query: 291 IVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYS 350 K M + + A + T K+ KS+ + + KQGR R NL+GKRVD+S Sbjct: 286 SEYYNKLMELQTICAKISMKNVKLPETMLRKKNFKSIEERLSSKQGRLRLNLMGKRVDFS 345 Query: 351 GRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI------KAAKKMVERE 404 R+VI+ P L + + G+P +A L P + + L + M+ER+ Sbjct: 346 ARTVISPDPNLSMDEVGVPTGVAKILTFPEVVTQHNKEKLQKLVSAGMNDYPGAFMLERK 405 Query: 405 EAVVWD-------------ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHP 451 + + ++ V+ NR P+LHR+ + + ++ +++ Sbjct: 406 NGQTYRLNGSEKIIDIGDTVHRYIMNGDYVIFNRQPSLHRMSMMGHKVRVLPFSTFRMNL 465 Query: 452 LVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLY 511 YNADFDGD+M +HVP TLEA+ E LM++ I++P + PI+ QD G Y Sbjct: 466 CDTTPYNADFDGDEMNLHVPQTLEARAEVATLMLTPTQIITPQDNGPIMGIVQDTQCGSY 525 Query: 512 YMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKD 571 +T+ E +V + + G + A +K K +++ + Sbjct: 526 LITKRETFI--EQLVFYNILQCLDNFD-GTVPIPAILKPIPKWTGKQVFTQILPTINFHR 582 Query: 572 TTVG------------RAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVI 619 + ++++ L S+ N++ K S ++ T ++ G++ T + Sbjct: 583 GNWSIKELLKNGPAVADSDVYILDGVHLVGSLRNKSEFGKNRSGIIQTIFKDKGMEATKV 642 Query: 620 FADQIMYTGFAYAARSGASVGIDDMVIPEKKHEII----SEAEAEVAEIQEQFQSGLVTA 675 F ++ T ++ G +VG+ D+V+P+ H+ I +++ E + + Sbjct: 643 FFNKTQATVNSWILTRGFTVGVGDIVVPQSVHDSIRANVEKSKKEAVKFLSHQHDDEIK- 701 Query: 676 GERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAA 735 + + + + L+ + N++ M DSG++GS Sbjct: 702 -------VQAGNTMFENLESELGSLLEKLKNECDSITTKSLKKDNNLLAMVDSGSKGSTT 754 Query: 736 QIRQLAGMRGLMAKPD--------------------GSIIETPITANFREGLNVLQYFIS 775 I Q+ G + G + + ++ GL+ ++F Sbjct: 755 NILQMVAFVGKQEINNLRIPFGFYKRTLPHYWKEDYGFVSRGFVENSYVMGLSPQEFFFH 814 Query: 776 THGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPL 835 R+G+ DTA+KT+++GY+ R++V +D+ D M + GGD + L Sbjct: 815 AMAGRQGIIDTAVKTSDTGYIQRKMVKCMEDVQCKYDRTVRRSSGDMVEFMYGGDGVDAL 874 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 85/473 (17%), Positives = 164/473 (34%), Gaps = 76/473 (16%) Query: 901 RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL 960 +++ IN GE +G IAAQSIG P TQ+T+ TFH G +S + E ++K +L Sbjct: 1065 KNIYERSFINPGEMVGSIAAQSIGAPATQMTLNTFHHAGISSASVTEGVPRLK-----EL 1119 Query: 961 SNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANW 1020 NV + V + +T ++D ++ +PY + D ++ +AN Sbjct: 1120 LNVSKTPKTPSMNVYLTNDTRESMVDLDKELNKT--IPYTKLKDLIDNVEIWFDPDIAN- 1176 Query: 1021 DPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKI 1080 VI E F+ D I+ + I + + + +V + + G D I Sbjct: 1177 -----SVIEEDREFIN--DFIEVEEIKPE--DYCKWTIRLVFGYNKMVSMGVDSDS--DI 1225 Query: 1081 VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPR 1140 + + ++ +P+ V++ ++ G E +T + + Sbjct: 1226 LRVKIKELFKDALVIPSDSNNIVNGTVKIVVHIRFRVGSI-----SECSNIDHLTDEVDK 1280 Query: 1141 VADLFEARRPK-----EPAILAEISGIVSFGKETKGKRRLVITPVDG----SDPYEEMIP 1191 + + K +++ I GI K K +V+ P + Sbjct: 1281 SVEAVAYYKSKLDELLRTVVISGIEGITKVIIPQKPKNAIVVDPETKMLRDQLQWVVFTE 1340 Query: 1192 KWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDK 1251 + E + V+ +++ ++ G+ A + E+ G +N + Sbjct: 1341 GSNMAGLAECDNVDFYKTVTN---NVYETFLYLGIEAGRTQLEAELIKTLS--GSYVNFR 1395 Query: 1252 HIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITK 1311 H+ ++ M I G Sbjct: 1396 HLALMADVMTFTGRIQPFNRMGLSRG---------------------------------- 1421 Query: 1312 ASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 I+ ASF++T AA + D L G+ +N+++G+ AGTG Sbjct: 1422 ----RAGVITRASFEQTLEQFRRAAAFSESDILNGISQNILMGQRTVAGTGAF 1470 >UniRef50_C5LSN9 DNA-directed RNA polymerase n=7 Tax=Perkinsus marinus ATCC 50983 RepID=C5LSN9_9ALVE Length = 1667 Score = 575 bits (1483), Expect = e-162, Method: Composition-based stats. Identities = 205/942 (21%), Positives = 362/942 (38%), Gaps = 155/942 (16%) Query: 5 LKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGP 64 L + + ++ +++ + SP + S +P R GL R+ G Sbjct: 7 LNEPYSSAELKKVASVEFGILSPQQTIAQS---------------EPVRGGLSDPRL-GS 50 Query: 65 VKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL---- 120 V CE CG+++ GH+ELA P H FLK+ Sbjct: 51 VDPR--------------TPCETCGMKMRDCP---GHFGHLELAKPMYHGGFLKTTLKAL 93 Query: 121 ---PSRIGLLL-DMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEF 176 LL D I+RVL ++ M+ + + + + + ++++ + G + Sbjct: 94 RCVCYYCSKLLADPNDLVIKRVLRVKNPKTRLQAMSVICKSRKVCDSGGMESVMKSGGKQ 153 Query: 177 DA----------------------------KMGAEAIQALLKSMDLEQECEQLREELNET 208 G ++ M + E NE Sbjct: 154 QDEDIDDEDVAHTGTLVHPSTTSLVVLNMLGCGYAQPSYTVQGMQIIVSFPSSANEENED 213 Query: 209 -----NSETKR-------KKLTKRIK----LLEAFVQSGNKPEWMILTVLPVLPPDLRPL 252 +TKR + RI + F ++P W+ILTV+PV PP +RP Sbjct: 214 GVVVDQGDTKRPLSAETAYNILSRISVPDMIAMGFTPGRSEPSWLILTVVPVPPPPVRPS 273 Query: 253 VPLDGGR-FATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGR 311 V GG A DL + ++ N LKR L+ A IV +LQ + L DN Sbjct: 274 VAFGGGTDRAEDDLTLKLQDIVKVNQMLKRQLETGAGSHIVNEIAALLQWHLYTLQDNNI 333 Query: 312 RGRAITGS-NKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPK 370 G + +K+ +KS+ +KGK+GR R NL+GKRVD+S R+VIT P + + Q G+PK Sbjct: 334 PGMPEAQTKSKKAIKSIRSRLKGKEGRIRGNLMGKRVDFSARTVITGDPNIDIDQVGVPK 393 Query: 371 KMALELFKPFIYGKLELRGLA-------TTIKAAKKMVEREEAVV--------------- 408 +A+ L L + T+ AK+++ + + + Sbjct: 394 SIAMNLTFAERVTPLNYAKMRELVMRGPTSWPGAKRIIRDDNSCIDLRFTKQAQDIVLRY 453 Query: 409 -WDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMA 467 W + + V+ NR P+LH++ + ++ +L+ V + YNADFDGD+M Sbjct: 454 GWRVERHMQDNDLVIFNRQPSLHKMSMMGHRAKILPFSTFRLNLSVTSPYNADFDGDEMN 513 Query: 468 VHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVL 527 +H+ + E + E R +MM ++SP P++ QD +L +T+ + + + Sbjct: 514 MHLAQSHETRAEIRNIMMVPRQVVSPQGNRPVMGIVQDSLLASTLLTKRDTFIEKDMCMQ 573 Query: 528 TGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLK------------DTTVG 575 + G + +K R K L+ K SL+ D Sbjct: 574 LLMWLLPASWDGGNMPMPCILKPRPLWSGKQLFSMLLPKISLQKDAGIASKNRGDDPWFS 633 Query: 576 RAILWMIVPKG-LPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAAR 634 R+ +I+ +G + ++ + + +++ + G + T F I + Sbjct: 634 RSDCRVIIQEGEIMSGVICKKTVGASSGGLIHITWLDYGPERTKQFIGGIQRLVNFWLLH 693 Query: 635 SGASVGIDDMVIPE----KKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAAN 690 G +VG D+V + K + +++A+ +V ++ Q G + A + A N Sbjct: 694 HGFTVGCADIVANDGTMQKVADTLAQAKRDVRKLVLDAQRGRLEAQPGKSLQQSFEARVN 753 Query: 691 DRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM--- 747 R+++A D+ + N+I M DSG++G+ I Q+ G Sbjct: 754 QRLNQAREDS--------GRLAADSLDDKNNIIAMVDSGSKGNPINIAQIIACVGQQNVE 805 Query: 748 -----------------AKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKT 790 G + ++ GL ++F G R+G+ DTA KT Sbjct: 806 GKRIPTGFRDRTLPHFTKDDFGPESRGFVENSYLAGLTPQEFFFHAMGGREGIIDTACKT 865 Query: 791 ANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVK 832 A +GY+ RRL+ + + V D +E + + G D Sbjct: 866 AETGYIQRRLIKSMESIKVRYDGSVRNEMDEVVQFLYGEDGM 907 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 87/470 (18%), Positives = 169/470 (35%), Gaps = 78/470 (16%) Query: 904 ARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNV 963 ++ GE++G IAAQSIGEP TQ+T+ TFH G S+ + + + Sbjct: 1092 FEKSLVAAGESVGTIAAQSIGEPATQMTLNTFHFAGVGSKNVT-----------LGVPRL 1140 Query: 964 KSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPH 1023 K ++N + L + + + L ++ K + G+ + + + + D Sbjct: 1141 KEIINVAKNL--KTPSMTVYLHPDYASDDAKAKQVQSELEHTSLGKITSYTQILFDPDVR 1198 Query: 1024 TMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSA--ERTAGGKDLRPAL--- 1078 T + + +++ + D + S VL K L Sbjct: 1199 TSILEED-------RQLVEEYYELPEDDFDSSRCSPWVLRIKLDNSVMIDKKLSTRFVGQ 1251 Query: 1079 KIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGL 1138 KIV+ G DV +D ++ + +++ + V S D G Sbjct: 1252 KIVEDYGGDVQCIVSDDNSENLIVRIRLLRDTEVVLSLSLLLYNDRVFNRPRRTDYDG-- 1309 Query: 1139 PRVADLFEARRPKEPAILAE-----ISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKW 1193 + F + E ++L++ I G+ + + + V E + Sbjct: 1310 ---EEDFRLLKKVEGSLLSDLTLKGIPGVTKCYMRQDNRVQYS-SDVGTFARSREWVLDT 1365 Query: 1194 RQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHI 1253 N+ + +E D +IL + G+ A + ++NE++ V G +N +H+ Sbjct: 1366 DGCNLEQVLTMEAVDSTRTFSNDIVEILNVLGIEACRKALLNELRQVISFDGSYVNYRHM 1425 Query: 1254 EVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKAS 1313 V+ M +K L+ IT+ Sbjct: 1426 SVLCDTMCQKGH----------------------------------------LMSITRHG 1445 Query: 1314 LA--TESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGT 1361 + + +SF+E +L +AA + D +RG+ EN+++G+L P GT Sbjct: 1446 INRVERGPLMRSSFEEMVEMLMDAACYAETDHMRGVSENIMLGQLAPIGT 1495 >UniRef50_Q9AVW8 DNA-directed RNA polymerase n=2 Tax=Cryptophyta RepID=Q9AVW8_GUITH Length = 1473 Score = 575 bits (1482), Expect = e-162, Method: Composition-based stats. Identities = 191/892 (21%), Positives = 345/892 (38%), Gaps = 109/892 (12%) Query: 13 KTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLC 72 + + I+ + SPD I S +V T + P+ GL R+ K++ C Sbjct: 4 EEKLIKLIQFGILSPDEILKLSVVQVDSDMTFEHN--LPKLGGLLDQRMGTVDKEFFCTT 61 Query: 73 GKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPL 132 ++ GHI L P H F+ + + + Sbjct: 62 ------------------DMGSFLESPGYFGHISLNRPVFHEGFMDYVLRILRCIDHTTS 103 Query: 133 RDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLK-- 190 + I + + + NL ++ + + L A ++F+ + E I+ + Sbjct: 104 KLI--INENSQKIKNVLKIKNLSQRLNIISKLCLTACNLKKNKFNNFLKDEIIEKRISIQ 161 Query: 191 ------------SMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMI 238 D E R ++ K+T ++P+WMI Sbjct: 162 PKYSRDGWCIVAKFDSRITSEPTR-LVSAERIHEIFVKITDEACEKLGLNPKLSRPDWMI 220 Query: 239 LTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRM 298 +TVLPV PP +RP V + A DL +I N L++ + P ++ + + Sbjct: 221 ITVLPVPPPTIRPSVKFETLLRAEDDLTYKLGDIIRTNKILRKAIFSCLPSQLINEQINL 280 Query: 299 LQEAVDALLDNGRRGRAIT-GSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITV 357 LQ + + ++N A + + RP+KS+ ++GK+GR R NL+GKRVD+S R+VIT Sbjct: 281 LQYHIGSYMNNSVPSLAKSLQKSGRPIKSIKQRLQGKEGRLRGNLMGKRVDFSARTVITP 340 Query: 358 GPYLRLHQCGLPKKMALELFKPFIYGKLELRGLA-------TTIKAAKKMVEREEAVV-- 408 P ++L + G+P +A+ L P I + + AK ++ + + Sbjct: 341 DPNIKLDELGVPLSIAMNLTFPEIVTSFNIEYMKFLLYNGPYKHPGAKYLIRNDNNRIDL 400 Query: 409 --------------WDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVC 454 + + + VL NR P+LH++ + +++ +L+ Sbjct: 401 RYVKYLSNINLENGYCVERHLQNGDLVLFNRQPSLHKMSMMGHIVKVMKFSTFRLNLSAT 460 Query: 455 AAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT 514 + YNADFDGD+M +H P +E++ E + L+M +N I+SP +PI+ QD +LG +T Sbjct: 461 SPYNADFDGDEMNLHFPQNVESKSELKNLLMVSNCIVSPQGNKPIMGIVQDSLLGSMLIT 520 Query: 515 -RDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTT 573 + +K E M E L L A K RI K ++ +L T Sbjct: 521 EKGNFLSKYEIMAYLNLIEGYSL----NIPLPAIYKPRILWTGKQLISTIIPCINLSRTC 576 Query: 574 VGRAI-----------LWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFAD 622 + +I L ++++ +++ ++ +G F Sbjct: 577 ISHPEHEKAYVTSGDTRVIIFQGQLLSGMIDKRTIGATSGGLIHVIWKDIGPSACSYFIS 636 Query: 623 QIMYTGFAYAARSGASVGIDDMVIPEKKHE----IISEAEAEVAEIQEQFQSGLVTAGER 678 + +G SVGI D + + + II A+ V + ++ S Sbjct: 637 NFQIIVNNWLQLNGFSVGIGDCIPTKMVKKDVSLIIKTAKLFVKKSIKRLLSKKFNG--F 694 Query: 679 YNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIR 738 +NK +N + + L + ++ S+N++ M SG++GS I Sbjct: 695 FNK------DSNYNLENHLNKVLNNARDMAGSSAQKCLTSYNNLKKMIFSGSKGSLINIS 748 Query: 739 QLAGMRGLMAKPDGSI--------------------IETPITANFREGLNVLQYFISTHG 778 Q+ G I + ++ EGL ++F + G Sbjct: 749 QIVACVGQQNVEGKRIPFGFRKRSLPHYHYKNFEPETRGFVVNSYIEGLFPDEFFFHSMG 808 Query: 779 ARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGD 830 R+GL DTA+KT+ +GY+ RRL +D+VV D + + + G D Sbjct: 809 GREGLIDTAIKTSETGYIQRRLSKSMEDIVVEYDFSVRNNQQEIISFLYGED 860 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 90/545 (16%), Positives = 177/545 (32%), Gaps = 117/545 (21%) Query: 861 NTLLHEQWCDLLEENSVDAVKVRSVVSCD---TDFGVCAHCYGRDLA------RGHIINK 911 N + + +N + A+ +RS +S T F + H + R +I Sbjct: 995 NQKKSDNKQLINRDNFLLAIYIRSSLSLKIIYTKFNLNQHALNWIVNEICLSIRKSLIQP 1054 Query: 912 GEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKN----------------- 954 GE +G I+AQSIG+P TQ+T+ TFH G +++ ++K Sbjct: 1055 GEMVGTISAQSIGQPATQMTLNTFHFAGVSAKNVTLGVPRLKEIIDIQKNIKSPSLTIFL 1114 Query: 955 --KGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVA 1012 K S VK + S + + + ++I + + + + + ++ Sbjct: 1115 HKKCSNDPRKVKKIQESIESVRLNRISNYFEIIYDPD---FFFSISKCNRILVKNYMEIP 1171 Query: 1013 GGET----VANWDPHTMPVITEVSGFVRFTDMIDGQT---------ITRQTDELTGLSSL 1059 + ++W + E F++ I + +DE +G Sbjct: 1172 DEDINFLQASSWILKLKLLTEEFVEKGLFSNYIIETIKKKIKPIPFLIIASDENSGSIEF 1231 Query: 1060 VVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGD 1119 +V + KI + + + LE Sbjct: 1232 LVRFIWPEFINNYNSE---KIEKLFSRSNANTFFEYIKRANQKVSENLFLEPNYFKKIKH 1288 Query: 1120 TLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITP 1179 + G++ +T PR D+ E P + L F ET+G + Sbjct: 1289 YFYNYNLKPYGSQKLTKLYPRRIDIIEP-EPNQSGKLKNN---FEFVLETEGVDLRFVMN 1344 Query: 1180 VDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQD 1239 +G D R D++ + L++ G+ A + ++ E+++ Sbjct: 1345 YNGID----------------YSRCTTNDLL--------ESLKVLGIEATRKILIQELRN 1380 Query: 1240 VYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVG 1299 + G +N +H+ +V Sbjct: 1381 LISFDGSYVNYRHLCTLVD----------------------------------------L 1400 Query: 1300 ATYSRDLLGITKASLAT--ESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLI 1357 T+ L+ I + + I+ ++F+ET + E+AV G D LRG+ ++ G + Sbjct: 1401 ITFRGSLMSINRHGINKCNSGPIAKSTFEETVDIFYESAVFGLNDNLRGVSAQIMTGMVP 1460 Query: 1358 PAGTG 1362 GTG Sbjct: 1461 KIGTG 1465 >UniRef50_C4QF52 DNA-directed RNA polymerase n=2 Tax=Schistosoma mansoni RepID=C4QF52_SCHMA Length = 1342 Score = 575 bits (1482), Expect = e-162, Method: Composition-based stats. Identities = 229/1123 (20%), Positives = 397/1123 (35%), Gaps = 218/1123 (19%) Query: 6 KFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYR--TFKPERDGLFCARIFG 63 K + IK L S ++ S +V K + GL R+ Sbjct: 3 SLYKPPDLPRIVENIKFQLCSEGDLKRLSHVQVLKCLLYAEGQSNRRALDYGLLDPRLGA 62 Query: 64 PVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSR 123 +D +C CG++ G+ +L +P H+ + Sbjct: 63 NKRD---------------ELCATCGLDYQTCI---GHWGYFDLPTPIYHVGYT----WH 100 Query: 124 IGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGA- 182 I +L + RVL E + + ++Q A+ + Sbjct: 101 IVKILQTICKTCSRVLLPEQQRARFSISCSNPSLDYVHKKQLRKAIHKLSSRVHVCPFCS 160 Query: 183 ----------------------------EAIQALLKSMDLEQECEQLREELNETNSETKR 214 E + K + + + + E K Sbjct: 161 ALNGVVTKGTSLSYVVHDIFRHAKAKVDEYVNEFAKVITENTDLAPVVRKGLEIIRPGKA 220 Query: 215 KKLTKRIK------LLEAFV-QSGNKPEWMILTVLPVLPPDLRPLVPLD-GGRFATSDLN 266 +L +I LL F Q P +I+ +PV P +RP V + DL Sbjct: 221 LQLFSKIPEEDLPLLLMPFDSQWTTHPRNLIVQRVPVCPSAIRPSVVSEVRSGTNEDDLT 280 Query: 267 DLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKS 326 +Y+ ++ + ++ D+ D I L L+++ + G +K ++ Sbjct: 281 QMYQWILAQAATIEE--DIGEADQIACL--DNLHAEFARLINSQQSGLPPVQDHKF-MRG 335 Query: 327 LADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLE 386 L + GK GRFR +LLGKR +++ R+VI+ P +R+ + +P A L P Sbjct: 336 LLQRLAGKHGRFRGSLLGKRTNFTARTVISPDPNMRIDEVCIPVHCAKLLTYPERVTDFN 395 Query: 387 LRGLATTIKAA-------------------------------KKMVEREEA--------V 407 L L + + K+ + E A Sbjct: 396 LNFLRSLVLNGPNNYPGAMFVSYKLRGERKRQAEASGNSDVVKRFLASERAREDVAKYLQ 455 Query: 408 VWDILD-EVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQM 466 DI++ ++ + VL NR P+LHR+ IQAF V+ + + +P C +NADFDGD+M Sbjct: 456 SGDIVERHLLDDDIVLFNRQPSLHRVSIQAFRAVVKPFRTFRFNPCCCTPFNADFDGDEM 515 Query: 467 AVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMV 526 +H+P T A+ EA+ LM+S NI+SP NGEP+I P QD++ + +T V + Sbjct: 516 NIHLPQTEAARAEAKHLMLSLKNIVSPKNGEPLISPIQDLITATHLLTLKDVFLNRDQAC 575 Query: 527 LTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVP-- 584 A+ L + L L + K I G+ + L + + VP Sbjct: 576 TLA---AQLLAGNHLGRLLSLPKPAILWPVALWTGKQIFGLILSPHPSTGIKVNLRVPTK 632 Query: 585 ----------------------KGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFAD 622 + L + + LG + S + T R G + Sbjct: 633 SMYSSKGQEMCPNDGFVLIQNSELLAGCVDKKLLGGGSKSSIFYTLLRDYGREACADAMW 692 Query: 623 QIMYTGFAYAARSGASVGIDDMV----IPEKKHEIISEAEAEVAEIQEQFQSGLVTAGER 678 ++ + A G S+G+ +++ + K +IS A + Q+Q + Sbjct: 693 RLGRIALFFLAHRGFSIGLGEVMPSSDLVASKTALISRGFATCDDYINQYQMNTLVCNPG 752 Query: 679 YNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIR 738 + + + + +SK + + + NS +MA SG++GS I Sbjct: 753 CSMEDTLESNISQELSKIRDE--------AGAACKRQLHPSNSPLVMAQSGSKGSFLNIS 804 Query: 739 QLAGMRGLM-----------------AKPDGSI---IETPITANFREGLNVLQYFISTHG 778 Q+ G P GS + + +F GL+ ++F Sbjct: 805 QMIACVGQQVIGGKRVPDVINGRSLVHFPPGSRTPEAKGFVGNSFYSGLSPSEFFFHAMS 864 Query: 779 ARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDR 838 R+GL DTA+KTA++GY+ RRLV +DL V DD + G D +PL Sbjct: 865 GREGLTDTAVKTADTGYMQRRLVKFLEDLAVAYDDTVRDSRGDIIQFRYGSDGLDPLEME 924 Query: 839 V-----------------------LGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEEN 875 +G ++AE++ + L + C ++E Sbjct: 925 TDTFPVNFVKEMEHIRTSYDCPHEVG-MSAEELELAVEVVFQLDAFRHLDSRLCSAIKEF 983 Query: 876 SVDAV--KVRSVVSCDTDFGVCAHCYGRDLARGH----------------------IINK 911 ++V ++R H G +L + +I Sbjct: 984 IHNSVCPRIRKW-----QEWCTEHANGSNLINQNERLTRTQLRIFLTHVKEKYEKALIEP 1038 Query: 912 GEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKN 954 G A+G + QS+GEP TQ+T++TFH G AS + +++ Sbjct: 1039 GTAVGALCGQSVGEPATQMTLKTFHFAGVASMNITQGVPRMRE 1081 Score = 57.0 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 51/143 (35%), Gaps = 11/143 (7%) Query: 1169 TKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVI------SDGPEAPHDILR 1222 K +++ + G K + EG R+ I ++ + Sbjct: 1194 VKLVEDVIVKGIPGVSRVVIQQDKGEHIIFVEGARLREVMCIPGVVAERTRSNNILEVEQ 1253 Query: 1223 LRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRK-----ATIVNAGSSDFLEG 1277 + GV A R +++E+ V GV++N +H+ ++ M K IV+ +L Sbjct: 1254 VLGVEAARRVVIDELLAVMEGHGVEVNVRHVMLLADVMTNKWSTMDQCIVDDKIEMYLPY 1313 Query: 1278 EQVEYSRVKIANRELEANGKVGA 1300 + E ++ I N K Sbjct: 1314 DVNENKKLTIENAAKNDKNKRLI 1336 >UniRef50_A8N128 DNA-directed RNA polymerase n=59 Tax=Dikarya RepID=A8N128_COPC7 Length = 1642 Score = 574 bits (1480), Expect = e-162, Method: Composition-based stats. Identities = 195/874 (22%), Positives = 349/874 (39%), Gaps = 98/874 (11%) Query: 6 KFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPV 65 +F + + ++ + SP+ I++ S +++ PE ++ T KP+ GL R+ Sbjct: 5 QFAFSAAPVRKVKEVQFGILSPEEIKAVSVVKIEYPEVMDETTHKPKLQGLMDPRMGTID 64 Query: 66 KDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPT-----AHIWFLKSL 120 ++++ C+ CG + + GHIELA PT I +++ Sbjct: 65 RNFK---------------CQTCGEGMAECP---GHFGHIELARPTDPAFAEKIRHIRNP 106 Query: 121 PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKM 180 R+ ++ D + ++ + E E + +E + Sbjct: 107 KQRMAVVWD----------HCKTKTICEADEPREEGAEGDGDE---------PKKGHGGC 147 Query: 181 GAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSG--------- 231 G + Q + + + + ++ +++ +E S K+L ++L F + Sbjct: 148 GHQQPQIRKEGLKMFVQYKKSKDDDDEMKSLQPDKRLITPSEILTVFKKISDHDLHLLGL 207 Query: 232 ----NKPEWMILTVLPVLPPDLRPLVPLDGGR-FATSDLNDLYRRVINRNNRLKRLLDLA 286 +PEWMILTVLPV PP +RP + +DGG + DL +I ++ +KR + Sbjct: 208 SDEYARPEWMILTVLPVPPPPVRPSIAVDGGTMRSEDDLTYKLGDIIKASSNVKRCEEEG 267 Query: 287 APDIIVRNEKRMLQ---EAVDALLDNGRRGRA-ITGSNKRPLKSLADMIKGKQGRFRQNL 342 P I+ +++LQ V +DN G + RP+K++ +KGK+GR R NL Sbjct: 268 VPAHIISEFEQLLQASIFHVATYMDNDFAGIPQALQKSGRPVKAIRARLKGKEGRLRGNL 327 Query: 343 LGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVE 402 +GKRVD+S R+VIT P L L + G+PK +A+ L P + L ++ Sbjct: 328 MGKRVDFSARTVITGDPNLELDEVGVPKSIAMNLTYPERVTPYNIAYLQELVRNGPTTYP 387 Query: 403 REEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFD 462 VV D + + RA +LG E L +G YNADFD Sbjct: 388 GARYVVRDTGERI---DLRYNKRADAFLQLG-WIVERHLKDGDT--------PPYNADFD 435 Query: 463 GDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKG 522 GD+M +HVP + E + E + I+SP +P++ QD + G+ T Sbjct: 436 GDEMNMHVPQSEETRAELSQIAWVPRQIVSPQANKPVMGIVQDTLCGIRKFTLRDTFLDW 495 Query: 523 EGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMI 582 + E G+ A +K + K + + + Sbjct: 496 NHVQNILLWVPE---WDGVVPTPAILKPKPLWTGKQILSLTIPRGINIQRASENKSSNPV 552 Query: 583 VPKGL---PYSIVNQALGKK----AISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARS 635 G+ + + KK + +++ +R G + T + + + Sbjct: 553 FDDGMLIENGEFIYGIVDKKIVGASAGGLVHVVFREKGPEATKQLFTGLQMIVNFWLFHN 612 Query: 636 GASVGIDDMV----IPEKKHEIISEAEAEVAEIQEQFQS-------GLVTAGERYNKVID 684 G S+GI D + E + I+E++A+VA++ E G+ ++V Sbjct: 613 GFSIGIGDTIADARTMEFITKNIAESKAKVAQVIEDANMDRLKTKPGMTLRESFESEVEG 672 Query: 685 IWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMR 744 I A D + +L+ + + + + SF +I M+ + S R G R Sbjct: 673 ILNKARDSSGQYAQKHLKEDNNVKQMVVAGSKGSFINISQMSVCVGQQSVEGRRIPFGFR 732 Query: 745 G----LMAKPDGSI-IETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRR 799 K D S + ++ GL ++F R+GL DTA+KTA +GY+ RR Sbjct: 733 HRTLPHFTKDDFSPEARGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRR 792 Query: 800 LVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKE 833 LV +D++V D + + + G D + Sbjct: 793 LVKALEDVMVCYDGTVRNSLGDLIQFVYGEDGMD 826 Score = 146 bits (368), Expect = 7e-33, Method: Composition-based stats. Identities = 89/473 (18%), Positives = 174/473 (36%), Gaps = 92/473 (19%) Query: 904 ARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNV 963 I + GE G +AAQSIGEP TQ+T+ TFH G +S+ + + + Sbjct: 1007 FNQSIAHPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVT-----------LGVPRL 1055 Query: 964 KSVVNSSGKLVITSRNT----ELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVAN 1019 K ++N + + S E+ + E + + ++ + ++ ++ Sbjct: 1056 KEIINVATNIKTPSLTIHLQPEIAVAPELAKNVQQ-ELAFTSLKTVTSAVEIW------- 1107 Query: 1020 WDPH-TMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLR-PA 1077 +DP+ T +I E FV I + I R + + +VLD ++ + A Sbjct: 1108 YDPNPTTTIIEEDEVFVESFFAIPDEEIERNLHKQSPWLLRLVLDRSKMLDRKLTMHYVA 1167 Query: 1078 LKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQIS----SGDTLARIPQESGGTKD 1133 +I + +D+ + ++ ++ + ++ D D R + + Sbjct: 1168 SRIAECFKSDLFVIWSEDNSETLVIRCRVLSSGDKDDPEEVGLEEDIFLRQLENTMLNSV 1227 Query: 1134 ITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKW 1193 G+ + +F + LA G + K + I DG++ Sbjct: 1228 TLRGVRGINRVFLTAS--DRVTLAP-DGSIKTEKGAE-----WILETDGTNLK------- 1272 Query: 1194 RQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHI 1253 V + V+ S+ +I + GV A ++ E+++V G +N +H+ Sbjct: 1273 ---GVMCLDGVDSTRTYSNNCV---EIFTVLGVEAARAALMKEIRNVIEFDGSYVNYRHL 1326 Query: 1254 EVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKAS 1313 ++ M + T L+ IT+ Sbjct: 1327 GLLCDVMTHRGT----------------------------------------LMPITRHG 1346 Query: 1314 LATE--SFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 + + SF+ET +L EAA G++D+ G+ ENV+ G++ P GTG Sbjct: 1347 INRADTGALMRCSFEETVEILMEAAAVGEKDDCHGIAENVMFGQMAPMGTGAF 1399 >UniRef50_C7DHC4 DNA-directed RNA polymerase n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DHC4_9EURY Length = 844 Score = 570 bits (1468), Expect = e-160, Method: Composition-based stats. Identities = 225/894 (25%), Positives = 363/894 (40%), Gaps = 125/894 (13%) Query: 13 KTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLC 72 + E + IK SP+MI+ S ++ P+T N + P GL R+ Sbjct: 2 QAETIEYIKFTSISPEMIKKMSVAKLIVPDTYNEDGY-PIDGGLVDQRL----------- 49 Query: 73 GKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPL 132 + G+ C+ CG + K GH+EL P H F KS I +L Sbjct: 50 ----GVIDPGLKCKTCG---GRAKSCTGHFGHLELIRPVIHPEFAKS----IYFMLQSTC 98 Query: 133 RDIERVLYFESYVV-IEGGMTNLERQQILTEEQYLDALEEFGDEFDA------KMGAEAI 185 R+L E + + M +L E+ ++ G A Sbjct: 99 ESCHRILLGEDQISEAKEAMKSLVVSDSEDEQHEIEKNAVLGGVLKKLKTVKKCPHCGAP 158 Query: 186 QALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVL 245 + LK ++ +T + +PEW +LT L V Sbjct: 159 KRKLKFER-PTFFYLEGNKMKPDEIRDWLSGITDEDLKMFNMDAKAARPEWFVLTALLVP 217 Query: 246 PPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDA 305 P ++RP + L+ G + DL ++ N RL++ +D AP II+ + +LQ V Sbjct: 218 PVNVRPSITLESGERSEDDLTHKLVEIMRINQRLEQDIDAGAPQIIIDDLWELLQYHVTT 277 Query: 306 LLDNGRRGRAI-TGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH 364 +N G + + RPLK++A +KGK+GR R NL GKRV++S R+VI+ L ++ Sbjct: 278 YFNNETPGVPVARHRSTRPLKTIAQRLKGKEGRLRYNLSGKRVNFSARTVISSDSSLTVN 337 Query: 365 QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEA------VVWD-------- 410 Q G+P KMA L P K + AAKK +E +E + D Sbjct: 338 QVGIPIKMAENLTVPVYVTKWNID-------AAKKFLENKEYPTVVNVITKDGMRKRVSD 390 Query: 411 ---------------ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCA 455 + ++I VL NR PTLHRL I A ++ GK ++LH + Sbjct: 391 LNREELLKEVEPGYVLERQLIDNDIVLFNRQPTLHRLSIMAHRVKVLPGKTLRLHVSIAY 450 Query: 456 AYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTR 515 YNADFDGD+M +HVP TLEAQ EAR LM +LSP +G+PII +D + G+Y +T+ Sbjct: 451 PYNADFDGDEMNLHVPQTLEAQAEARYLMQPKYLVLSPRDGQPIIFSEEDEIAGIYLLTK 510 Query: 516 DCVNAKGEGM--------VLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKT 567 D E + PK SG A + I K + G++V Sbjct: 511 DNAYFSKEESCRMLSNVGIYELPKAERDGSYSGKAIFSMLLPKGINFESKASRGKVV--- 567 Query: 568 SLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYT 627 I ++ +G+ ++ + K +K++ + G + T F ++ Sbjct: 568 ----------IKNGVLEEGI----IDDKIIGKEGAKLIRKLFVDYGPEVTEQFILRVNKL 613 Query: 628 GFAYAARSGASVGIDD----MVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVI 683 A G ++ + D + +K EII +AE + E+ + ++ G + Y K Sbjct: 614 ALRVAYLHGLTISVKDYYNSEQVNREKAEIIKDAETKAYELMKSYKDGKLEPLPGYTKKQ 673 Query: 684 DIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGM 743 + ++S+A + + + N+ Y+MA GARG+ + Q++ Sbjct: 674 TLEMLLQAQLSQARNTASKALSKV--------LDEKNNAYLMASIGARGNILNMVQMSMF 725 Query: 744 RGLMAKPDGSIIE--------------------TPITANFREGLNVLQYFISTHGARKGL 783 G + G +T+ F +G+ Q F+ G+R Sbjct: 726 LGQQSVRGGRPTRGYSGRVLPYFKKNDKNPEAKGFVTSCFFDGMEPRQMFMHAMGSRDSA 785 Query: 784 ADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRD 837 +L TA SGY+ RRL++ QD V +D + + GGD +P + Sbjct: 786 MTKSLVTAVSGYMQRRLINAMQDFYVDKDLSVRDASGALIQTLYGGDGVDPTME 839 >UniRef50_Q8TXI8 DNA-directed RNA polymerase n=1 Tax=Methanopyrus kandleri RepID=Q8TXI8_METKA Length = 953 Score = 570 bits (1468), Expect = e-160, Method: Composition-based stats. Identities = 225/962 (23%), Positives = 367/962 (38%), Gaps = 167/962 (17%) Query: 4 LLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFG 63 L++ + Q + I + PD IR S EV PET + + P G+ R+ Sbjct: 3 LMEEPRVQDPPKYVKRILFGILPPDKIRKMSKVEVTSPETYDEDGY-PIEGGVMDTRM-- 59 Query: 64 PVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSR 123 + G+ C CG + GHIELA P H + + R Sbjct: 60 -------------GVIDPGLRCRTCGQPAGRCP---GHFGHIELARPVLHPRYAE----R 99 Query: 124 IGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAE 183 I +L + RV + E + + R+ E D + + Sbjct: 100 IKDVLRATCPECGRV------KLPEDEIESYLREVREGIRPVKSVAAEVIDRAEKRESCP 153 Query: 184 AIQALLKSMDLEQECEQLREE--LNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTV 241 A + + ++ + ++ L + +K+ + F +PEW +LTV Sbjct: 154 HCGAESRKITYQKPTTIMMDDERLWPVDIRAWLEKIPDEDVEILGFHPERARPEWAVLTV 213 Query: 242 LPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQE 301 LPV P +RP + L+ G A DL ++ N RLK L+ AP+ I+ ++ +LQ Sbjct: 214 LPVPPVTMRPSIILETGERAEDDLTHKLVDIVRVNLRLKESLEAGAPEPIIEDQWDLLQY 273 Query: 302 AVDALLDNGRRGRAI--TGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP 359 V +DN G + + +PLK + +KGK+GRFRQNL GKRV++S RSVIT P Sbjct: 274 HVTTYIDNEIGGVPVARHRTGGKPLKGIVQRLKGKEGRFRQNLAGKRVNFSARSVITPDP 333 Query: 360 YLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI-------KAAKKMVEREEAVVWD-- 410 L G+P+ +A EL P + + L + A +V+R+ + + Sbjct: 334 ELDPFTLGVPEAIAKELTVPERVTEWNIDRLRKLVLNGPNKHPGANYVVKRDGSRIRITD 393 Query: 411 ---------------ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVC- 454 + ++ PV+ NR PTLH F ++ GK +L P C Sbjct: 394 ENKEKLAEDLEPGDVVERHLMDGDPVMFNRQPTLHIQSELGFRVRVMPGKTFRL-PAACY 452 Query: 455 --AAYNADFDGDQMAVHVPLTLEAQLEARALMMS-TNNILSPANGEPII--VPSQDVVLG 509 +NADFDGD+M +HVP + EA+ E R LM ++ P NG + P + ++G Sbjct: 453 MGVGFNADFDGDEMNLHVPQSEEARAEVRELMGCYVYHLWPPKNGHEDVRNSPIHEAIVG 512 Query: 510 LYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSL 569 ++ ++R + + +L K+ + L K R E+ E V Sbjct: 513 IHLLSRAWIPLREAYQLLEEVKKEGDWFEPTEVKLKPEAKYRRGFEEEIHELEFVCGQPR 572 Query: 570 --KDTTVGRAILWMIVPKGLPYSIV-------NQALGK---------------KAISKML 605 + GR +L + +P L + ++ GK K + ++ Sbjct: 573 EGEPLVTGRQLLSVFLPDWLDRVELENAVCPDDEEHGKVVIEKGRIVRGFLDEKTVHGIM 632 Query: 606 NTCYRIL---------------GLKPTVIFADQIMYTGFAYAARSGASVGID---DMV-- 645 + T+ D+I G + R G ++GID D+ Sbjct: 633 TEIVHRYAAREVARGESYPWFKAAETTLRAMDKIGRLGLRFVTRYGFTLGIDEFEDIYER 692 Query: 646 -----------IPEKKHEIISEAEAEVAEIQEQ--FQSGLVTAGERYNKVIDIWAAANDR 692 +K EII E + E++E + GE + I+ Sbjct: 693 FRDEVERLCDEAAKKAKEIIERGERRLQELEEHETCNRSRIERGEMLERNIE-------- 744 Query: 693 VSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAK--- 749 +M L V ++ + FN Y+M +SGARGS I ++A + G A Sbjct: 745 --SEVMAILNQPRVETERLLKKHRDLFNPAYIMPESGARGSITNIARMALIGGQQAVMGE 802 Query: 750 --------------------------PDGSIIETP-------ITANFREGLNVLQYFIST 776 P P + + F EGL++++YF+ Sbjct: 803 RPHRAKHNTEHIMEKIVNYSYTDRVTPHFEKSLIPGVKEGGFVRSGFFEGLDMVEYFLHA 862 Query: 777 HGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLR 836 R+GL D +TA+SGYL RR V A DL+V + + G D +P + Sbjct: 863 MSGREGLIDKGFRTADSGYLHRRYVTTALDLIVDSGGRVRDSANNVIQLTYGEDGVDPAK 922 Query: 837 DR 838 Sbjct: 923 KW 924 >UniRef50_Q9BMP2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Stylonychia mytilus RepID=Q9BMP2_STYMT Length = 1678 Score = 568 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 179/860 (20%), Positives = 338/860 (39%), Gaps = 99/860 (11%) Query: 105 IELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQ 164 IELA P H LL+ + + ++ S ++ + ++ + + Sbjct: 1 IELARPVYHAG-----------LLEFIRKVLRCCCFYCSRLLADKNKLEEIKRLKSSSAK 49 Query: 165 --YLDALEEFGDEFDAKM-GAEAIQALLKSMDLEQECEQL----------REELNETNSE 211 + L + E D + G Q + L + E ++ L + Sbjct: 50 LARVLKLSDGVKECDPQQNGCGHRQPKFQKTGLRIQVEYFDEQYDPGKDRKQILQADEAL 109 Query: 212 TKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRR 271 +++T L F ++PE MI+ L V PP +RP V + + DL Y++ Sbjct: 110 RVLERITDEDCELMGFNPRISRPENMIIKNLAVAPPPVRPSVSMSNTMRSEDDLTYCYQK 169 Query: 272 VINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITG-SNKRPLKSLADM 330 ++ N L+ ++ A + + LQ V ++DN +G+ + +PLK++ Sbjct: 170 ILQTNITLQNQINRGANMTTINELRTNLQYYVATVMDNEIQGQPTQKHKSGKPLKAIRAR 229 Query: 331 IKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGL 390 ++GK+GR R NL+GKRVD+S R+VIT P L+L Q G+P+++AL L P + + Sbjct: 230 LRGKEGRLRGNLMGKRVDFSARTVITPDPNLQLDQLGVPQQIALNLTVPETVTNENIDEM 289 Query: 391 AT------TIKAAKKMVEREEAVVWD-----------------ILDEVIREHPVLLNRAP 427 I K + R + D + + V+ NR P Sbjct: 290 RKLIERGPNIWPGAKYIIRHDDRQIDLSQMRNRSEATIHPGFKVERHLRDNDYVIFNRQP 349 Query: 428 TLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMST 487 +LH++ + ++ +L+ V YNADFDGD+M +HVP + E E + +M Sbjct: 350 SLHKMSLMGHRVKVLPFSTFRLNLSVTTPYNADFDGDEMNMHVPQSYETMAEIKEIMAVP 409 Query: 488 NNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVLTGPKEAERLYRSGLASLHA 546 N I+SP + +P++ QD +LG+ T +D K M L + Y + Sbjct: 410 NQIVSPQSNKPVMGIVQDSLLGVMLFTLKDTFIEKELVMQLLMWAK----YEDDKFPMPT 465 Query: 547 RVKVRITEYEKDANGELVAKTSLKDTTVGRAILW--------MIVPKGLPYSIVNQALGK 598 +K R K ++ +L+ + ++W +I L + + Sbjct: 466 ILKPRPLWTGKQIFSLIIPDINLQKVGEKKGLIWDSAGDLNILIRKGELICGNLTKGTIG 525 Query: 599 KAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEA- 657 + M++ ++ G F + ++G +VG+ D++ ++ + I ++ Sbjct: 526 SSSGGMIHIIWKEKGPYCCRDFLSNTQLIINNWLHQNGFTVGVQDIIAKKEIVQKIRDSM 585 Query: 658 ---EAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEE 714 + +V +IQ++ Q G + + + + A+ N ++KA D + Sbjct: 586 TKFKRDVTKIQQKAQLGKLKSQPGKSMMESFEASVNQCLNKARDDC--------GNMALA 637 Query: 715 KQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM--------------------AKPDGSI 754 S+N + M +G++GS I Q+ G G Sbjct: 638 DLSSWNRLKAMVYAGSKGSNLNISQIMACVGQQNVEGKRIPFGFYKRSLPHFSKDDFGPE 697 Query: 755 IETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDC 814 + + + GL ++F G R+GL DTA+KTA +GY+ RRL+ +D++V D Sbjct: 698 SKGFVENCYLNGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKALEDVMVKYDGT 757 Query: 815 GTHEGIMMTPVIEGGDVK--EPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLL 872 + + G D E + D + + ++ L + + + Sbjct: 758 VRTSKEQIIQFLYGEDGMAGEHIEDLTINLLKMKNTDVQNKCKFLHKPKPNMSDNELEQH 817 Query: 873 EENSVDAVK----VRSVVSC 888 +D +R C Sbjct: 818 LSKFMDREYAERIIRDPEIC 837 Score = 152 bits (384), Expect = 9e-35, Method: Composition-based stats. Identities = 95/492 (19%), Positives = 180/492 (36%), Gaps = 90/492 (18%) Query: 901 RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL 960 + ++N GE +G I AQS+GEP TQ+T+ TFH G +++ ++K + Sbjct: 966 KSRFDQALVNPGEMVGSIGAQSMGEPATQMTLNTFHFAGVSAKNVTLGVPRLKE----II 1021 Query: 961 SNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANW 1020 + K++ S K+ + ++ + DE T ++ + + V + Sbjct: 1022 NVAKNIKTPSMKIFLKDKDKQ----DERIATIIGGRIEHTTLCHV-----VKSSAIYYDP 1072 Query: 1021 DPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKI 1080 DP V + + ++ +T R+T L KDL ++++ Sbjct: 1073 DPERTIVREDEELIRLYNEVRLFETERRRTSPWVLRFELD-----NDKVQFKDL--SMQL 1125 Query: 1081 VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPR 1140 ++ + ND+ D+ K +++L I + + G +D Sbjct: 1126 IEQKINDIFRDQIDVVKSDENAEKLVLRLRVND-IEDDEEDRTVCMYLKGFQD------- 1177 Query: 1141 VADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE 1200 +LF K +++++ + E E +++ E Sbjct: 1178 --ELFNDLALKGLHEISKVTFT-KYNDEIFDVETGECKQDKECWLIETDGVALQKVLGLE 1234 Query: 1201 GERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM 1260 G ++ +ILR+ G+ AV ++NE++ V G+ +N +H+ + M Sbjct: 1235 GINYKK-----TVSNDIIEILRVLGIEAVRMSLINELRFVLSSYGIYVNYRHLSTLCDVM 1289 Query: 1261 LRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLAT--ES 1318 ++ L IT+ + S Sbjct: 1290 TQR----------------------------------------GILTAITRHGINRVDSS 1309 Query: 1319 FISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEA 1378 + SF+ET +L EAAV + D L+G+ EN+I+G+L P GTG E Sbjct: 1310 PLRKCSFEETVEILLEAAVFAETDPLKGITENIIMGQLAPFGTGCF------------EI 1357 Query: 1379 PAAPQVTAEDAS 1390 PQV E+A Sbjct: 1358 TIDPQVLQENAQ 1369 >UniRef50_O77165 DNA-directed RNA polymerase (Fragment) n=3 Tax=cellular organisms RepID=O77165_9EUKA Length = 1690 Score = 567 bits (1461), Expect = e-159, Method: Composition-based stats. Identities = 181/814 (22%), Positives = 320/814 (39%), Gaps = 90/814 (11%) Query: 98 RRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLER- 156 GH+ LA H+ +++++ + + M + + + G L Sbjct: 1 CPGHFGHVTLAKAVYHLAYIRTVCRVLQCVC-MNCSRLLVDRKISASTRLRNGAVRLNEV 59 Query: 157 -QQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDL---EQECEQLREELNETNSET 212 + L + + + + + G A Q L + L + EL E Sbjct: 60 SKMCLQYKTCGECAVKTENAQVTRTGCGARQPLWRVSKLSITRVPRDSSGGELPEVQDSE 119 Query: 213 KRKKLTKRI----KLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDL 268 + ++ K I +L +PEWM++T+LPV P +RP + A DL Sbjct: 120 EVVRILKNISDEDCVLIGLNPRFARPEWMMITLLPVPPMTVRPSIAFGSVGRAEDDLTKQ 179 Query: 269 YRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLA 328 ++ N ++++L A I +++ +LQ V DN + RP+KSL+ Sbjct: 180 LSTIVKNNAQIRKLKLDGAAPINIQDTLDVLQINVACFFDNSVPSLEKAKNGNRPIKSLS 239 Query: 329 DMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELR 388 + ++GK+GR R L+GKRVD+S RSVIT P L L++ G+P+ +A L P + L + Sbjct: 240 ERLRGKEGRVRGQLMGKRVDFSARSVITPDPTLALNELGVPRTVASNLTVPEMVSPLNIH 299 Query: 389 GLATTIK------AAKKMVEREEAVV--------------WDILDEVIREHPVLLNRAPT 428 LA ++ K V R++ + I ++ V+ NR P+ Sbjct: 300 RLAALVRNGPGTYPGAKYVIRDDGARIALTSRGDMPIVPGYIIERHLMDGDHVVFNRQPS 359 Query: 429 LHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTN 488 LH++ + + ++ + +L+ V YNADFDGD+M +HVP +LEA E + LM Sbjct: 360 LHKMSMMGHQVRVLPYSSFRLNLSVTTPYNADFDGDEMNMHVPNSLEAISEVKNLMAVPF 419 Query: 489 NILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARV 548 I++P P + QD +LG ++R + M+ Y A + Sbjct: 420 QIVTPQKNSPCMGVVQDSLLGCSLISRRDTFLTEDVMMNLAL---VISYDPDKIPQPAIL 476 Query: 549 KVRITEYEKDANGELVAKTSLKDTTVG-----------------------RAILWMIVPK 585 + + K A L+ K G + + K Sbjct: 477 RPKPLWTGKQAFSMLLPKDLSYKGKCGFYFNAEQSVSREVAAAQEEYMNSLLDSVVRIKK 536 Query: 586 GLPYSIV--NQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDD 643 G ++ V N+A+GK +++ ++ G F ++ AY G SVG +D Sbjct: 537 GQLHTGVITNKAVGKSGQGSIIHILWKDQGPMAARDFLSRVQLLTNAYILTRGFSVGTED 596 Query: 644 MVIPEKKHEI----ISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMD 699 + + I A+ V + ++G + + V A N + A+ + Sbjct: 597 TLADPDTLQAVKAEIEGAKRNVKIHIDDARAGRLKVQAGRSLVESFEAKTNKSLQDALSN 656 Query: 700 NLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSI----- 754 + N+ +M +SG++GS I Q+ GM G I Sbjct: 657 AGKK--------SLSSLKYDNNFKLMIESGSKGSEMNICQITGMVGQQNVEGKRIAFGFQ 708 Query: 755 ---------------IETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRR 799 + ++ GL+ ++F G R+GL DTA+KT+ SGY+ R+ Sbjct: 709 RRTLPHFRKDDYEPEARGFVENSYVSGLSPQEFFFHMMGGREGLIDTAVKTSESGYIQRK 768 Query: 800 LVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKE 833 L+ +D+ V D + M+ G D + Sbjct: 769 LMKSMEDISVKYDTTVRNAAGMILQFAYGEDGID 802 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 88/498 (17%), Positives = 179/498 (35%), Gaps = 98/498 (19%) Query: 891 DFGVCAHCYG------RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRA 944 + C+G R+ ++ GE +G IAAQS GEP TQ+T+ TFH G ++ Sbjct: 973 KHHITLDCWGYIIGEVREKFGRALVAPGEMVGAIAAQSFGEPTTQMTLNTFHSAGVGTKN 1032 Query: 945 AAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEF-GRTKESYKVPYGAVL 1003 + + +K ++N + + + + N + + D F + + KVP L Sbjct: 1033 VT-----------LGVPRLKELINVN--MALRTPNISIFVQDPFCNSEENATKVP----L 1075 Query: 1004 AKGD---GEQVAGGETVANWDPHTMPVITEVSGFVRF----TDMIDGQTITRQTDELTGL 1056 + V+ E + +DP M V+ +++G F T + + + + Sbjct: 1076 HIKHTTVRDLVSRAEII--YDP--MYVVDQMTGEAYFDCTRTVVPEDEFFVQDNYMQADR 1131 Query: 1057 SSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQIS 1116 + + ++ ++ + V+ + + A++ + I + D ++ Sbjct: 1132 LNYQTHSYSSFVLRVMLDTKVMQQMELKEESVV---SIVKAEFEDAVEIISTVND---LN 1185 Query: 1117 SGDTLARIPQESG----------GTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFG 1166 R+ +E G D + + + + Sbjct: 1186 KPRMRIRLVRERAEAEAAVDEDRGEDDRLRDMEEIIMGLHVHGIRGMTKVMVDDSRTEKW 1245 Query: 1167 KETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGV 1226 + +G + + ++ P + V V+ ++ +D+L GV Sbjct: 1246 VDERGALQTRRFWPLDGEVKKDTAPPLLDVMVHPA--VDPYRTTTNSITVINDVL---GV 1300 Query: 1227 HAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVK 1286 A ++ E++DV G IN +H+ ++V M Sbjct: 1301 EAARAALLKELRDVLGFDGSYINIRHLLMLVDVMT------------------------- 1335 Query: 1287 IANRELEANGKVGATYSRDLLGITKASLAT--ESFISAASFQETTRVLTEAAVAGKRDEL 1344 + L+ IT+ + + ASF+ET VL +AA DEL Sbjct: 1336 ---------------FRGYLMSITRFGMNRTDNGILMRASFEETVDVLQDAAQFAGHDEL 1380 Query: 1345 RGLKENVIVGRLIPAGTG 1362 RG+ +N+++G++ P GTG Sbjct: 1381 RGVSDNIMLGQVAPVGTG 1398 >UniRef50_Q4A5S8 DNA-directed RNA polymerase subunit beta' n=3 Tax=Bacteria RepID=RPOC_MYCS5 Length = 1492 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 295/800 (36%), Positives = 449/800 (56%), Gaps = 97/800 (12%) Query: 5 LKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGP 64 + ++ ++ I ++LA+ + + SWS G V KPETINY+T+KPE+DGLF IFGP Sbjct: 1 MSNTFSKNNVKKIKQISLSLATNEDVLSWSNGVVSKPETINYKTYKPEKDGLFDEIIFGP 60 Query: 65 VKDYECLCG--KYKR-----LKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFL 117 V D++C KYK+ + R CEK ++ RR RMGHI L +P H WF Sbjct: 61 VTDFKCPICFTKYKKSDENTICKRTTSCEKIQPKILPKISRRSRMGHIALNNPVVHFWFF 120 Query: 118 KSLPSRIGLLLDMPL---------RDIERVLYFESYVVIE-GGMTNLERQQILTEE---- 163 K S I LL + + D+E+++Y++S++V+E GG+ +L++ I+ Sbjct: 121 KINHSTISKLLGLKVAGSNKPVTKSDLEKIIYYKSHIVLETGGLKSLQKNTIIDINDAAD 180 Query: 164 -----------------------------------------------QYLDALEEFGDEF 176 +Y + +EE+ Sbjct: 181 IYAGALEEILEFNKDNKDGYEEILDTLNDLKEYAASKTGQDYGIDFYEYNEIIEEYSQA- 239 Query: 177 DAKMGAEAIQALLKSMDLEQECEQLREELNETNSETK----------RKKLTKRIKLLEA 226 G++AI+ LLK++DLE+E +++++E++ N + K R KL KR+ ++++ Sbjct: 240 KIGTGSKAIEYLLKNIDLEKESKEIQDEIDTINDQNKYEISSSEALKRNKLYKRLAIIKS 299 Query: 227 FVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLA 286 F++SG KPE +++ LPV+P DLRPLV LDGGR +TSD+N+LYRR+I RNNRL++ + Sbjct: 300 FLKSGQKPENLLIYNLPVIPADLRPLVQLDGGRHSTSDINELYRRIIIRNNRLEKWYESD 359 Query: 287 APDIIVRNEKRMLQEAVDALLDNGRR-GRAITGSNKRPLKSLADMIKGKQGRFRQNLLGK 345 AP +I +NE RMLQEAVDAL+DN R+ +T + P KS++D + GK+GRFRQNLLGK Sbjct: 360 APVLIKQNEFRMLQEAVDALIDNSRKKPGPVTSKDGHPFKSISDALVGKKGRFRQNLLGK 419 Query: 346 RVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKL-ELRGLATTIKAAKKMVERE 404 RVDYSGRSVI VGP+L+++Q G+P+ MA +LF+P+I ++ + ++KAAKK+V+ Sbjct: 420 RVDYSGRSVIVVGPHLKMYQVGIPRDMAAKLFEPWIINRIMKEEEGINSVKAAKKLVDSL 479 Query: 405 EAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGD 464 ++W +++V+ PVLLNRAPTLHRL IQAF+PVLI GKAI++HPLV A+NADFDGD Sbjct: 480 NPIIWPYVEQVLENRPVLLNRAPTLHRLSIQAFQPVLIRGKAIKIHPLVTTAFNADFDGD 539 Query: 465 QMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEG 524 QMAVHVP++ A EA+ LM+++ NIL P +GEPII PSQD++LGLYY+T + N K EG Sbjct: 540 QMAVHVPISKAAVREAQELMLASKNILGPKDGEPIINPSQDIILGLYYLTIEKANQKNEG 599 Query: 525 MVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVP 584 E Y + +L RV + ++ +K + +TVG+ IL P Sbjct: 600 KFYPSFNEMMLAYENKYINLATRVVLPVSALKKIS-ILQKTDAPYIYSTVGKFILNNAFP 658 Query: 585 KGLPYSIVNQALGKKAISKMLNTC---YRILGLKPTVIFADQ-IMYTGFAYAARSGASVG 640 + + GK+ K+ +T ++ LK + ++ I F Y A + Sbjct: 659 RDFDFVF-----GKRVTEKLTSTNEHGEEVVSLKTKIDTSEHDIKRYVFNYGDNFTAKIK 713 Query: 641 IDDMVIPEKKHEI------ISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVS 694 D+ +P K EI I E + I++ Q + + + ++ + D Sbjct: 714 EADVNLPLNKKEIAKIVRNIYEKYVPIVNIEDISQVINKIDKTQLDNLHELCSELKDFNG 773 Query: 695 KAMMDNLQTETVINRDGQEE 714 + DN ++ R +EE Sbjct: 774 NKLEDNRIHLELLVRLIKEE 793 Score = 349 bits (895), Expect = 6e-94, Method: Composition-based stats. Identities = 146/453 (32%), Positives = 221/453 (48%), Gaps = 47/453 (10%) Query: 599 KAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAE 658 K +K+L + D I GF ++ +SG ++ ++D+V + E I +AE Sbjct: 818 KHYTKLLERVWFRY-SNYVSTVLDVIKDLGFKFSTKSGITISMNDIVTSKTTKERIKKAE 876 Query: 659 AEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVS 718 E +++ F+ G +T ERY I W+ + + K + + + Sbjct: 877 EETEALKDYFKKGYLTDDERYTLTIKKWSDVKESIEKELKKVVDSNLD------------ 924 Query: 719 FNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDG-------------SIIETPITANFRE 765 N ++MM SGARG+ + QLAGMRGLM SI+E P+ ++F + Sbjct: 925 -NPLFMMLSSGARGTYSNFTQLAGMRGLMNNNTKILKADAENDRVVRSIVEIPVKSSFLD 983 Query: 766 GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPV 825 GL +++ STHGARKGL DTAL TA SGYLTRRLV+VAQ +V+ E+DCG+ G ++ + Sbjct: 984 GLTAYEFYSSTHGARKGLTDTALNTAKSGYLTRRLVEVAQGVVIREEDCGSDYGFVVKDI 1043 Query: 826 IEG--GDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVR 883 + + E L++R+ GR TA + ++V + L+ + + + V++R Sbjct: 1044 KDTKTNTIIESLQERIEGRFTAVPIYDQN-GKLIVKESELITPEIASEIVAKGITKVEIR 1102 Query: 884 SVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASR 943 SV+SC T G+C CYG+DLA I+N GEA+GVIAAQSIGEPGTQLTMRTFH GG A Sbjct: 1103 SVLSCHTRNGLCKKCYGKDLATNRIVNIGEAVGVIAAQSIGEPGTQLTMRTFHTGGVAGG 1162 Query: 944 AAAESSI--------------QVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLID--- 986 + S VK + K S + + Sbjct: 1163 EDITGGFGRLIELIDAYDQPWGTPAEISRHYGKVKKIETQKNKKGKESGQFNISVEYFDE 1222 Query: 987 EFGRTKESYKVPYGAVLAKGDGEQVAGGETVAN 1019 + + Y V L G++V G+ ++ Sbjct: 1223 DGNKQTHQYLVKSSQRLRVKQGDEVVAGQKLSE 1255 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 98/343 (28%), Positives = 168/343 (48%), Gaps = 19/343 (5%) Query: 1042 DGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFL 1101 +G+ I ++++ +T + ++ ++R L G G D+ + Sbjct: 1072 NGKLIVKESELITPEIASEIVAKG---ITKVEIRSVLSCHTRNGLCKKCYGKDLATNRIV 1128 Query: 1102 PGKAIVQLEDGVQI-SSGDTLARIPQESGGT---KDITGGLPRVADLFEARRPK--EPAI 1155 V + I G L +GG +DITGG R+ +L +A PA Sbjct: 1129 NIGEAVGVIAAQSIGEPGTQLTMRTFHTGGVAGGEDITGGFGRLIELIDAYDQPWGTPAE 1188 Query: 1156 LAEISGIVSFGKETKGKR-------RLVITPVD---GSDPYEEMIPKWRQLNVFEGERVE 1205 ++ G V + K K+ + + D ++ ++ ++L V +G+ V Sbjct: 1189 ISRHYGKVKKIETQKNKKGKESGQFNISVEYFDEDGNKQTHQYLVKSSQRLRVKQGDEVV 1248 Query: 1206 RGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKAT 1265 G +S+GP +++L AV YI+ EVQ +YRLQG+ I DK+IE+I+RQML K + Sbjct: 1249 AGQKLSEGPIVLNELLESVDTRAVQNYILKEVQKLYRLQGIAIADKYIEIIIRQMLSKIS 1308 Query: 1266 IVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASF 1325 I++ G S F G V+ + N L + GK A + G + L ++S+++AAS+ Sbjct: 1309 IIDPGDSSFYSGSLVDAFVYQKENGILLSQGKKPAYGVVKIKGAKQTPLLSDSWLAAASY 1368 Query: 1326 QETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD 1368 QET ++L +A++A + D L GLKEN+I+G IPAGT + ++ Sbjct: 1369 QETAKILVDASIAKRTDNLEGLKENIIIGYKIPAGTNSNFEEN 1411 >UniRef50_Q8SS15 DNA-directed RNA polymerase n=2 Tax=Apansporoblastina RepID=Q8SS15_ENCCU Length = 1395 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 291/1486 (19%), Positives = 536/1486 (36%), Gaps = 249/1486 (16%) Query: 18 DAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKR 77 I S + I S EV P + + P R GL+ R+ GP+ Sbjct: 8 KNISFGSYSDEEIERNSCMEVVVPGCFD-KFGHPIRGGLYDLRM-GPL------------ 53 Query: 78 LKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLL----DMPLR 133 C+ C + GHI+L+ + F SL S + + Sbjct: 54 --DLSSNCKTCNLSFLNCP---GHFGHIKLSRIVLNPMFFDSLFSIVRCYCFQCKHFRIT 108 Query: 134 DIERVLYFESYVVIEGGMT--NLERQQILTEEQYLDAL--------------------EE 171 + +R++ F + ++ G +L+R +++EE+ L + +E Sbjct: 109 NYDRLILFCKFSLLLNGEEAEDLDRLYMVSEEEELYKIVSERIENAKKNRSEPLMESHQE 168 Query: 172 FGDEF----------------DAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRK 215 F + K+ A +LK + E ++ ++L + + R+ Sbjct: 169 VVHRFLQNAGSRRKCVRCGHSNPKIVKGAKMKVLKDLRKGNEKDEDGKDLEFLSPDAVRE 228 Query: 216 KLTKRIKLLEAFVQS---GNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRV 272 + ++S P ++ LPV+P RP++ LDG + A + + Sbjct: 229 LMDDLFSNEADLIESIFFRRDPGMFFISNLPVIPNRFRPMIVLDGKK-AENFQTLYLNDI 287 Query: 273 INRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIK 332 + + + + L LQ A+ + DN + P +++ Sbjct: 288 LRVSVLVTKDLS----------YWPELQAAILSSFDNKNISKWSRTRMVPP--GHKQILE 335 Query: 333 GKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLAT 392 K G FR+N++GKRV+++ R+VI+ P L + G+P A L P + L Sbjct: 336 RKDGLFRRNIMGKRVNFAARTVISPDPNLETREIGIPLVFAEALTFPERAASFNVDRLKK 395 Query: 393 TIKAAKKM-------------------VEREEAVVWDILD-------EVIREHPVLLNRA 426 + E+ A+ +LD ++ VL+NR Sbjct: 396 AVVNGPTYPGSLYLQDGDVMLSLAHMPDEKRYALANQLLDGKKVVWRHLVDGDVVLMNRQ 455 Query: 427 PTLHRLGIQAFEPVLI-EGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMM 485 PTLHR I A + ++ + + +++H C +YNADFDGD+M VH P ++ E+R ++M Sbjct: 456 PTLHRPSIMAHKCRVLRKERTLRMHYANCKSYNADFDGDEMNVHFPQNYASEAESRHIVM 515 Query: 486 STNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVLTGPKEAERLYRSGLASL 544 + +N L P NG+PI QD ++ + +T +D ++ + L +GL+ Sbjct: 516 NDSNYLVPTNGKPIRGLVQDHIVIVTVLTMKDSFFSEEDYFTLVN---------AGLSDR 566 Query: 545 HARV-KVRITEYEKDANGELVAKTSLKDT--------------TVGRAILWMIVPKGLPY 589 + + I + + +G V T LK+ R + + Sbjct: 567 RIVLDRPCIVKPARLYSGRQVISTILKNLGLVVNIEIETNVPKNAWREHSEERILRIREG 626 Query: 590 SIVNQALGKKAIS----KMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMV 645 +IV L K ++ +++ C I G + I + G Y G ++GIDD++ Sbjct: 627 NIVTGILDKNSLGPTFKSLIHACGEIKGFATSNDLLTYIGWVGNRYLLMYGFTIGIDDLL 686 Query: 646 IPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTET 705 + ++ + E + ++ Q V A + D A + + M Sbjct: 687 LDKEADKKRREVVRVKDQEAKELQRRYVEANPDFYLYADKKAYLDSVMRTEMNSVTSEIV 746 Query: 706 VINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMA--------KPDGSIIE- 756 ++ +K N++ ++ +G++GS + Q++G G G + Sbjct: 747 KVSVPSGLQKSFPENNMELIIATGSKGSIVNLSQISGALGQQELEGQRVPIMASGKTLPC 806 Query: 757 -----------TPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQ 805 I F G+++ QYF R+GL DTA+KTANSGYL R L+ + Sbjct: 807 FAALDPSPSSGGYIYHRFLTGIDLPQYFFHCMAGREGLIDTAIKTANSGYLQRCLIKHME 866 Query: 806 DLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVL--GRVTAEDVLKPGTADILVPRNTL 863 + V D G + + G D + + L +VL G + +V + Sbjct: 867 EAKVEYDMSVRI-GKRVIQFMYGEDGLDCTKSSYLDDAEFFKRNVLLFGKSASIVSKLED 925 Query: 864 LHEQWCDLLEENSVDAV--KVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQ 921 ++ + L +D + ++R + D +C+ + + GE++GVIAAQ Sbjct: 926 RYKDFLSLKFRKQIDLLDDELRRFL---ADRYICS-----------LADPGESVGVIAAQ 971 Query: 922 SIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSR--- 978 S+GEP TQ+T+ TFH+ G ++ +++ I ++ KS+ + I R Sbjct: 972 SVGEPSTQMTLNTFHLAGVGAKNVTLGVPRLR---EILITASKSIRTPLITVPIKRRVSF 1028 Query: 979 ---NTELKL-----IDEFGRTKESYKV--PYGAVLAKG---DGEQVAGGETVANWDPHTM 1025 ++ + FG T+E V + + D GE + Sbjct: 1029 DITECLRRVTLKDCVKRFGVTEEIVMVSGVFQKKVKIMFELDNFVDLAGEVLD--RKFLK 1086 Query: 1026 PVITEVSGFVRFT---DMIDGQTIT-RQTDELTGLSSLVVLDSAERTAGGKDLRPALKIV 1081 + ++ G + M + ++ DE DS + + D + + Sbjct: 1087 LLGNKMKGLAKAKYTLGMSEAPKDDCKEVDENKENEGEDESDSDKESDPEGD---NVCLE 1143 Query: 1082 DAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRV 1141 G + D Y Q +D + ++S +T + Sbjct: 1144 ATTGENGDKDSEDHSTSYLEATDETDQTDDSGNTEEEEDFMNFAKKSKNV--LTFEILYP 1201 Query: 1142 ADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEG 1201 + E +IL I +E KG + ++ + R + V G Sbjct: 1202 SGFNEMISSVVESILPTI-----VVREVKGMEKASVSGSQLFVKSSSIYSLTRMIEVSPG 1256 Query: 1202 ERVERGDVISDGPEAPHDILRL---RGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVR 1258 + D++ +DI + GV A I+NEV V+ + G+ I+ +H+ +I Sbjct: 1257 VYEDLLDILDIYNAESNDIYDVYLTLGVEAARHAIINEVVKVFDVYGISIDIRHLLLIAD 1316 Query: 1259 QMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATES 1318 M RK G L A +S Sbjct: 1317 YMTRK--------------------------------GSYSPFSRHGLG-------ADDS 1337 Query: 1319 FISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 I SF+ AA D+L ++ VG + GTG Sbjct: 1338 PIQRISFESCYSNFKTAATFHLEDKLSNPSASLTVGNPVRCGTGCF 1383 >UniRef50_Q74M69 DNA-directed RNA polymerase n=1 Tax=Nanoarchaeum equitans RepID=Q74M69_NANEQ Length = 870 Score = 563 bits (1452), Expect = e-158, Method: Composition-based stats. Identities = 208/907 (22%), Positives = 360/907 (39%), Gaps = 109/907 (12%) Query: 13 KTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLC 72 + ++ I + P++IR S EVK PE + R P +G R+ Sbjct: 2 EIKKLGLIDLRPLDPEVIRKLSVVEVKIPEPYD-RDGLPIENGPMDPRM----------- 49 Query: 73 GKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPL 132 + G+ C+ CG + + G IELA P H+ FL + I LL Sbjct: 50 ----GVIDPGLRCKTCGGKYGEC---LGHFGRIELARPVYHVKFL----NEIKRLLQYTC 98 Query: 133 RDIERVL----YFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQAL 188 R + E ++ N + L+ + + + A Sbjct: 99 PKCGRAIIPQKLKEQFLKKINEYINEGKYDELSNFIQSTVIPKINEYRKKHKKCPYCNAE 158 Query: 189 LKSMDLEQECE-QLREELNETNSETK-----RKKLTKRIKLLEA--FVQSGNKPEWMILT 240 LK + E+ ++E++ + K ++ ++I +A F +PEW++LT Sbjct: 159 LKEIKFEKPWYFYIKEKIGDKEEWVKLTPLDVRQWLEKIPDEDAKLFGIINGRPEWLVLT 218 Query: 241 VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ 300 V+ V P RP + L+ G + DL ++ NNR++ LL AP+ I+ MLQ Sbjct: 219 VILVPPVTARPSIILETGERSEDDLTHKIADIVRINNRIEELLSYGAPEPILEENWEMLQ 278 Query: 301 EAVDALLDNGRRGRA-ITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP 359 V DN + RPLK L IKGK+GR R+NL GKRV++S R VI+V P Sbjct: 279 YHVATYFDNELPNVPKARHRSGRPLKGLLQRIKGKEGRLRRNLAGKRVNFSARGVISVDP 338 Query: 360 YLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAA------------------KKMV 401 + + + G+P+++A EL P I + L L + K M Sbjct: 339 RIDIDEVGVPEQVAKELTFPEIVTEWNLDWLKQKVLNGPESLDGANYVIDPNGRRFKIME 398 Query: 402 EREEAVV------WDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCA 455 E +E + W + +I L NR P+LH++ + V++ GK +L+P Sbjct: 399 ENKEELAERLEPGWVVERHIINGDYALFNRQPSLHKMSMMGHRSVILPGKTFRLNPATTT 458 Query: 456 AYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT- 514 YNADFDGD+M H+ E + E L +I++P G II ++D++ GLY ++ Sbjct: 459 PYNADFDGDEMNYHLVQNYEGKTEIEFLANVREHIVTPRYGLAIIGATEDIITGLYLLSL 518 Query: 515 RDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTV 574 +D + K ++ + + A+ + R K+ L+ + Sbjct: 519 KDKIPFKDAIQLIEYNCKYFGKDKILKLVEKAKKEGRDYLTGKEVFSALLPDDLDFEIKT 578 Query: 575 GRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAAR 634 +I L ++++ + K++ + G + T + + Y R Sbjct: 579 KNGEF-VIKNGILLKGVIDKEIVGVEKGKLIRELFERYGPEFTFKWLSDVTRLSVNYLTR 637 Query: 635 SGASVGIDDMVIPEKKHE----IISEAEAEVAEIQEQFQSGLVTAGER-------YNKVI 683 ++ D+ IP++ E II +A+ EV + E+++ G + +++ Sbjct: 638 EQLTISFSDIDIPKEVKEQIRKIIEKAKKEVDNLIERYKKGEIKPLPGRTIEETLEIEIL 697 Query: 684 DIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGM 743 + A D V + + ++ ++A SGARG + Q+ G+ Sbjct: 698 KVLNKARDEVGEVIEKHVD---------------PTKGTMILAKSGARGKLLNLIQVVGL 742 Query: 744 RGLMAKPDGSIIE--------------------TPITANFREGLNVLQYFISTHGARKGL 783 G + + E + F +GL+ +++F + L Sbjct: 743 VGQQSISGRRMEEGYKDRVLPHFKKGDKSAKARGFVEHGFADGLDPIEFFFHAASGKDAL 802 Query: 784 ADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRV 843 DT L+T SGYL RRLV V +DL V D + I G D + G++ Sbjct: 803 MDTTLRTPKSGYLYRRLVSVLRDLYVENDRTVRDTFGNIYQFIWGEDGIAVQKSEG-GKL 861 Query: 844 TAEDVLK 850 E + K Sbjct: 862 NVEKIFK 868 >UniRef50_B2ADZ3 DNA-directed RNA polymerase n=4 Tax=Dikarya RepID=B2ADZ3_PODAN Length = 1521 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 178/954 (18%), Positives = 322/954 (33%), Gaps = 152/954 (15%) Query: 14 TEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFK-PERDGLFCARIFGPVKDYECLC 72 + F A+K + S I + EV + + P + G R+ G Sbjct: 23 PKRFKALKFGIQSTQDILNQGVLEVSDNLLYDVENNRAPFKHGPLDPRLQGT-------- 74 Query: 73 GKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPL 132 C C ++ GH++L P HI +LK I L Sbjct: 75 ----SSPKPDAKCHTCHQDLMGCP---GHFGHVKLPLPVFHIGYLK----YIQATLQNIC 123 Query: 133 RDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSM 192 + R+L E+ + L + E + +Q ++ + Sbjct: 124 KSCSRILLTNEERRRFLRSLRREQDN-MARTAVLKRINEQCRKVRNCYHCGDLQGTIRKL 182 Query: 193 ------------------------------------------DLEQECEQLREELNETNS 210 +L + + ++++ Sbjct: 183 SCMKLVHDKFVAYNKSTAQKKVAPESKIEFDASFESAKAHFAELGKHTRRAMDDMHPLKV 242 Query: 211 ETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYR 270 K++ L + +PE + LP P +RP V + D+ Sbjct: 243 LNLFKEINSVDCELLGLDPAEGRPEMFLWRYLPAPPLCIRPSVAQESAS-NEDDITTKLA 301 Query: 271 RVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADM 330 ++ + L+ + AP + + LQ V +++ G + + + Sbjct: 302 EIVIYSAHLREAMLKGAPLPSLMEQWEFLQLQVGMYVNSDVPGL-VQQGFGKVTRGFCQR 360 Query: 331 IKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGL 390 +KGKQGRFR NL GKRVD+SGR+VI+ P L + Q +P+++A L P ++ L Sbjct: 361 LKGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIEQVAVPERVAKNLTYPERVHANNIQKL 420 Query: 391 ATTIKAAK----------------------------KMVER--EEAVVWDILDEVIRE-H 419 ++ ++E+ + + D+++ + + Sbjct: 421 KACVRNGPTEYPGALQITKNQGEENEMKFLLKHMKPHILEKNADNLRIGDVVERHLEDND 480 Query: 420 PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLE 479 VL NR P+LH+L I + + + +L+ VC+ YNADFDGD+M +HVP T EA+ E Sbjct: 481 IVLFNRQPSLHKLSIMSHYAKIRPWRTFRLNECVCSPYNADFDGDEMNLHVPQTEEARAE 540 Query: 480 ARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVLTGPKEAERLYR 538 A LM NN+ +P NGEPII +QD + Y ++ +D + + + Sbjct: 541 AINLMGVKNNLCTPKNGEPIIAATQDFITAAYLLSGKDRFYDRSSFTYIC--TQMLLGDT 598 Query: 539 SGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKG------------ 586 A +K + K ++ V + KG Sbjct: 599 YLELPPPAILKPKALWTGKQIFNVMMRPNKESPVLVNLDAKNKVYNKGNLQPPDMDIDDS 658 Query: 587 ----LPYSIVNQALGKKAIS-----KMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGA 637 ++ + K + + R G +++ G Sbjct: 659 FLVVRNSEVICGRMDKSTVGEGKKNSVFYVILRDYGADYAAATMNRLAKLCARSLTLRGF 718 Query: 638 SVGIDDM----VIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRV 693 S+G+ D+ + E K ++ +A Q ++G + + + + + Sbjct: 719 SIGVGDVFPSQALTEHKLMLLEKATTVCDGFISQAENGTLEKAPGCDMKETLETKLSGTL 778 Query: 694 SKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM------ 747 S E N+ +MA SG++GS + Q+ G Sbjct: 779 SAVRQ--------AAGSYCTENLSRNNAPLIMAKSGSKGSEINVAQMIACVGQQIIGGKR 830 Query: 748 --------AKPDGS------IIETPITANFREGLNVLQYFISTHGARKGLADTALKTANS 793 P + + +F GL+ ++ R+GL DTA+KTA + Sbjct: 831 VADGFQNRTLPHFEKGDKRAAAKGFVKNSFYTGLHPTEFLFHAISGREGLVDTAVKTAET 890 Query: 794 GYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAED 847 GY++RRL+ +DL DD + G D +P+ R D Sbjct: 891 GYMSRRLMKSLEDLSTQYDDTVRTSEGGIVQFQYGADRLDPVDMEGDARPVNFD 944 Score = 136 bits (342), Expect = 6e-30, Method: Composition-based stats. Identities = 106/595 (17%), Positives = 198/595 (33%), Gaps = 125/595 (21%) Query: 782 GLADTALKTA--NSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRV 839 GL D ++T+ + Y+ V E D + I K + Sbjct: 995 GLTDEQIRTSTDRAAYMA-----------VDEHDAAREYLNSVQTYITQRATKLARIRKS 1043 Query: 840 LG---RVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCA 896 +G V +D+ + + + + D + + VS + Sbjct: 1044 VGLDPGVLEDDLAMQAAVNRVNKGGSEMDIDLDDEARAKGQKHADLTAKVSEASLRKFIE 1103 Query: 897 HCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKG 956 C + + + G A+G + AQSIGEPGTQ+T++TFH G A + + Sbjct: 1104 LCLEK--YKKAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQG-------- 1153 Query: 957 SIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKE-SYKVPYGAVLAKGDGEQVAGGE 1015 + +K ++N+S + L+ + + +++ + D Sbjct: 1154 ---VPRIKEIINASKTISTPVITCVLENTKDVSAARAVKHRIEKTYIKDILD-------- 1202 Query: 1016 TVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGK-DL 1074 + V + + DG + E G+++ + D+ + K + Sbjct: 1203 -------YVDDVWLQDVAKIVLRLEKDGL----ENLEQIGITTTDIADAIVKAKKLKLKI 1251 Query: 1075 RPALKIVDAQGNDVLIPGT--DMPAQYFLPGKAIVQLEDGVQI-SSGDTLARIPQESGGT 1131 P V+ +VL+ T D A + LE G+ + + GD Sbjct: 1252 EPEDLKVNKNVIEVLVHNTWQDATAARKAARQRAAALEKGLTVANPGD---------ESA 1302 Query: 1132 KDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIP 1191 D F+ R +L E+ R +I + + ++ Sbjct: 1303 AD-----------FQLRVNFLKRMLPEVP-----IAGHPETTRAIINVDSKTSAHTVLVE 1346 Query: 1192 KWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDK 1251 + E V +++ D+L G+ A I E+Q V + I+ + Sbjct: 1347 GYGLRACMTTEGVVGTKCLTNSVMECRDVL---GIEAARTTIAFEIQQVMGD--MNIDPR 1401 Query: 1252 HIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITK 1311 H+E++ M Y D+LGIT+ Sbjct: 1402 HMELLADVMT----------------------------------------YKGDILGITR 1421 Query: 1312 ASLAT--ESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 LA +S + ASF++T L +AA K D + G+ E +I+G+ + GTG Sbjct: 1422 FGLAKMRDSVLQLASFEKTPDHLFDAAAGMKTDRILGVSECIIMGQTMSIGTGSF 1476 >UniRef50_Q0P3M5 DNA-directed RNA polymerase subunit beta' n=1 Tax=Ostreococcus tauri RepID=RPOC1_OSTTA Length = 740 Score = 561 bits (1445), Expect = e-158, Method: Composition-based stats. Identities = 286/712 (40%), Positives = 387/712 (54%), Gaps = 121/712 (16%) Query: 16 EFDAIKIALASPDMIRSWS---------FGEVKKPETINYRTFKPERDGLFCARIFGPVK 66 + +++ LASP I+ WS GE+ K +TINYRTFKPER GLFC RIFG Sbjct: 2 SIEYVQLQLASPSEIKRWSQRILPTGEVVGEISKADTINYRTFKPERGGLFCERIFGSTS 61 Query: 67 DYECLCGKYKRLK-------------HRGV----------ICEKCGVEVTQTKVRRERMG 103 + EC CGK KR K R +C CGVE T +KVRR RMG Sbjct: 62 NGECSCGKTKRRKLIVPVNFNRLTLQKRNAELEATQAIIEVCPSCGVEPTNSKVRRYRMG 121 Query: 104 HIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEE 163 I L P AH+W+ ++ P+ + LL+M ++I+ ++F++Y + G N + + Sbjct: 122 CISLKKPVAHMWYFRNSPNVLAALLNMRSQEIDETIHFQTYTPSKYGTQNYCLHGGV--Q 179 Query: 164 QYLDALEEFGDEFDAKM---------------------------GAEAIQALLKSMDLEQ 196 Y++ E F + G EA+Q LL +DL Sbjct: 180 WYVNHWEPMHPYFAGDIDVSMDKAASWNSKSTFMPSQIKTIENCGGEALQELLTRLDLVF 239 Query: 197 ECEQLREELNET-----------NSETKRKKLTK---------------------RIKLL 224 L +L T KR+K K R++ + Sbjct: 240 LQRMLSRKLKNTIEKKKLAAKSLRKRHKRRKTAKLLGRTDQKNYGITIKVREYSRRLEFI 299 Query: 225 EAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLL- 283 + + G +PEWMIL++ PVLPPDLRP++ + GRFATSDLNDLYRR+I R R ++ L Sbjct: 300 RSLARKGLRPEWMILSIFPVLPPDLRPMIQMSSGRFATSDLNDLYRRLIYRKIRFEKFLT 359 Query: 284 ---DLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQ 340 + PD+++R++ +LQEA D+++DNGR + N++P KSL +I+GK GRFRQ Sbjct: 360 LFDEEFLPDLLIRHDLCLLQEAADSIIDNGRLDKPAQRPNRKPFKSLTSIIEGKHGRFRQ 419 Query: 341 NLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKM 400 NLLGKRVDYSGRSVI VGP LRLHQCGLP++MALELF+PF+ L I+AAK + Sbjct: 420 NLLGKRVDYSGRSVIVVGPKLRLHQCGLPREMALELFQPFVIRALLEESGVKNIRAAKNL 479 Query: 401 VEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNAD 460 ++R +VWDILD V+ HPVLLNRAPTLHRLGIQAFEP+L+ G+AIQLHPLVC A+NAD Sbjct: 480 LQRRSQMVWDILDTVVLGHPVLLNRAPTLHRLGIQAFEPILLSGRAIQLHPLVCPAFNAD 539 Query: 461 FDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT--RDCV 518 FDGDQMAVHVPL LEAQ EAR LM++T+N LSPA GEP I+PSQD++LG YY+T + V Sbjct: 540 FDGDQMAVHVPLGLEAQAEARLLMLATHNWLSPATGEPSILPSQDMILGFYYLTTLKPTV 599 Query: 519 NAKG---------------EGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGEL 563 + K + + Y + LH + +R + Y + N E Sbjct: 600 SLKRPVEQPMAVRGRNLIQSNSIFNNFESVLHAYETSKVDLHEIIWLRWSSYIQTTNSEP 659 Query: 564 VAKTSLKDTTVGRAILWMIV-------PKGLPYSIVNQALGKKAISKMLNTC 608 + T K V ++ P S+ ++ +ISK+ N Sbjct: 660 LQITVNKTGHVTTVYDSFVMQSGATNGPDNSMLSVQMKSRDTSSISKVYNCL 711 >UniRef50_Q27095 DNA-directed RNA polymerase n=2 Tax=Trichomonas vaginalis RepID=Q27095_TRIVA Length = 1661 Score = 561 bits (1445), Expect = e-158, Method: Composition-based stats. Identities = 193/923 (20%), Positives = 348/923 (37%), Gaps = 150/923 (16%) Query: 17 FDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYK 76 +I L P+ I + E+ + + ++ + + GL R+ ++ Sbjct: 14 VGSIDFGLFDPEKIEMFGACEITENQMMDKGEYV--KGGLSDLRMGTQTRER-------- 63 Query: 77 RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIE 136 +C+ CG G+I LA P H+ FL LL M Sbjct: 64 -------LCDTCGRNQEDCP---GHFGYIRLAEPFFHVGFL----PHCYKLLQMVCHKCG 109 Query: 137 RVL--YFE---SYVVIEGGMTNLERQQILTEEQYLDAL-----------------EEFGD 174 RVL Y + Y+V N + E F + Sbjct: 110 RVLCSYSDPEIQYIVTHYKGKNRFLKLFEKIASKSGKCQHSPDLKNPNEPDVCLDERFWE 169 Query: 175 EFDAKMGAEAIQALLKS--------------MDLEQECEQLREELNETNSETKRKKLTKR 220 + +E ++ + L+ + + L+ + ++ + Sbjct: 170 LVNGDSHSEHVRVKKPCNAAVPAIEQGKDFLIKLKDVSKTEEDYLSAEVVLRIFENISDQ 229 Query: 221 IKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRF-ATSDLNDLYRRVINRNNRL 279 L F + P+WMIL +LPV P +RP V G + D+ +I N RL Sbjct: 230 DVRLLGFNPKRSHPKWMILKILPVPPLAVRPQVVSPGQSAPSQDDITHKLSDIIICNKRL 289 Query: 280 KRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRG--RAITGSNKRPLKSLADMIKGKQGR 337 + ++ D ++ + +LQ + + N + RA+T S RPLK ++ +KGK+G Sbjct: 290 RAQRSESSTDTAMKETRTLLQYHITTYMINDKPSIERAVTKSG-RPLKVISQRLKGKEGH 348 Query: 338 FRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAA 397 R +L GKR DYS RSVI+ + + Q G+P+++A L P + + L + + Sbjct: 349 LRGHLSGKRDDYSARSVISPDTSISIDQVGVPEQLAKILTFPEVVTPTNQKWLESIVMKG 408 Query: 398 KKMVEREEAVVWD-----------------------ILDEVIREHPVLLNRAPTLHRLGI 434 + V+ D + + + V+ NR P+LH++ + Sbjct: 409 HDDLGGANFVINDHGTRTDLSCCTDLSTITLSPGYIVERHLRDDDIVIFNRQPSLHKMSM 468 Query: 435 QAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPA 494 +++ G+ +L+P YNADFDGD+M +HVP + A+ E R +M I+SP Sbjct: 469 MGHRALIMSGRTFRLNPCDTTPYNADFDGDEMNLHVPQSQTARTEVRHIMAVPKQIISPQ 528 Query: 495 NGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGM------------VLTGPK--EAERLYRS 539 +P+I QD +LG ++ RD + + M +L P + +L+ Sbjct: 529 ANKPVIGLVQDALLGCRLLSKRDTFLTRNQVMNLMMWLPTTKDTILPPPCILKPVQLWSG 588 Query: 540 GLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKK 599 K+ Y +DAN + ++ A +I+ G +++ LGKK Sbjct: 589 KQVFSLFLPKISHNSYSQDAN-------KMDQNSIPLADRHVIIRDG---NLLAGILGKK 638 Query: 600 AI----SKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEK-----K 650 + +++ F +Q + G S+G+ D V+P+ K Sbjct: 639 TVARSEGSLIHVVINSYNTNIAKDFLNQTQLIVNNWLEHRGFSIGLIDCVVPDFVLQEVK 698 Query: 651 HEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRD 710 HE I + E++V + Q G + + + N+ ++ + + Sbjct: 699 HE-IDDVESKVQATIIKAQDGQLERMPGMSYMQSFETEVNNLTNEILSKTYKVIN----- 752 Query: 711 GQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAK--------------PD----- 751 K NS+ M +G++G+ + Q+ G+ G P Sbjct: 753 ---AKIRGDNSLSEMLSAGSKGADTNMSQIIGVVGQQNMEGKRVKFGFNGRTLPHFQKHE 809 Query: 752 -GSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVT 810 G + ++ GL ++ G R G+ DTA KT+++GY+ RRLV + V Sbjct: 810 YGLVERGFCKNSYIAGLTPPEFLFHAMGGRTGIIDTACKTSDTGYIQRRLVKSMESHHVA 869 Query: 811 EDDCGTHEGIMMTPVIEGGDVKE 833 D + + I GGD + Sbjct: 870 YDGTVRNSQNEIVQFIYGGDGLD 892 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 80/465 (17%), Positives = 153/465 (32%), Gaps = 79/465 (16%) Query: 901 RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL 960 +D I+ GE +G IA QSIGEP TQ+T+ TFH G ++ + + Sbjct: 1070 KDRFYRSIVAPGEMVGTIAGQSIGEPSTQMTLNTFHFAGISAHDVT-----------LGV 1118 Query: 961 SNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANW 1020 + ++N + I + + ++ + + +E K V A++ Sbjct: 1119 PRLNELMNLAKH--IRTPSVTVEFERDVAKDEEIVKA-------------VRAQIESASF 1163 Query: 1021 DPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKI 1080 + E+ + D +TI T + + +DL P + Sbjct: 1164 KKF--VIKAEI-----YYDPNPEETIIE---PDTKWINTRIRYGGVEDRELQDLAPWVLR 1213 Query: 1081 VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPR 1140 + + + +++ + + K D + GD ARI + KD Sbjct: 1214 FEINREE--MIASNIESISDIVQKIKGMYGDKFFVI-GDDDARIIRMQARLKDEQAEFAM 1270 Query: 1141 VADLFEARRPK--EPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNV 1198 + + L I GI + ++ + G D + Sbjct: 1271 DVKFLRETEQQMYKSFTLKGIPGISRVKINSAAEKMFLNPETHGFDKEKVSCLYTEGTAF 1330 Query: 1199 FEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVR 1258 E ++ D + + + + G+ A + E+ + G +N +H++++ Sbjct: 1331 REILSLDHVDTVHTITNDIYQVCDVLGIEAARHSLSYEMMLIMEKAGAALNRRHLDLLAD 1390 Query: 1259 QMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATES 1318 M + G SR GI K Sbjct: 1391 TMTQ-------------YGVLYPVSR----------------------HGINKTP---TG 1412 Query: 1319 FISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGY 1363 + AS++ T V +AAV + D +R + N+I G+ AGTG Sbjct: 1413 TLMRASYEMTNDVFFDAAVFSEIDYMRDVSSNIIAGKPSRAGTGI 1457 >UniRef50_Q9BHZ7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Loma acerinae RepID=Q9BHZ7_9MICR Length = 894 Score = 560 bits (1444), Expect = e-157, Method: Composition-based stats. Identities = 201/913 (22%), Positives = 371/913 (40%), Gaps = 102/913 (11%) Query: 103 GHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTE 162 GH++L P H+ ++ ++I +L+ R+ ++ I+ M+++ + E Sbjct: 1 GHMDLVKPVFHVGYM----NKIKKVLETVCFYCSRLKGYDVSNSIDAEMSHVVETIVSEE 56 Query: 163 EQYLDA----------LEEFGDEFDAKMGAEAIQALLKSMDLE-------QECEQLREEL 205 ++ A M ++ Q L+K L +E + + L Sbjct: 57 KKENLKNKKKIKSLNFWWSLCKAKTACMHCQSKQPLIKRDGLSLTAFIKGEESTEGKVIL 116 Query: 206 NETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDL 265 N + K+++ + F + ++PEWMI++VL V +RP V L+G DL Sbjct: 117 NGEKVSSIFKRISTEENEMLGFDEKYSRPEWMIISVLNVHAMSVRPSVVLEGTLRGEDDL 176 Query: 266 NDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAIT-GSNKRPL 324 ++ N L++ AP I+R+ + +LQ V L+DN G + + RPL Sbjct: 177 THKLSDIVKCNKNLEKHEKEGAPGHIIRDYENLLQYHVATLMDNSIPGLPQSLQKSGRPL 236 Query: 325 KSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGK 384 KS++ +KGK+GR R NL+GKRVD+S RSVI+ L L + G+P ++A P Sbjct: 237 KSISARLKGKEGRMRGNLMGKRVDFSARSVISPDSNLSLDEVGVPIQIAKIHTFPEKVTS 296 Query: 385 LELRGLATTI------KAAKKMVEREEAVVWDILDEVIREHPVLLNR-----------AP 427 ++ L I V RE + + +++ R + + R Sbjct: 297 FNIQKLQKLIDNGPNKYPGANFVTRETSEIDLRYNKISRTNNRMHRRATHDSEISYSLQT 356 Query: 428 TLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMST 487 L + + A +P + G+ +L+ V YNADFDGD+M +H+P + + E L+ Sbjct: 357 LLCIMSMMAHKPRFMPGRTFRLNLSVTTPYNADFDGDEMNLHMPQSYNTRAELEYLVKVK 416 Query: 488 NNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHAR 547 +N++S +P++ QD ++G+ MT D + + + + L L + Sbjct: 417 HNVVSCQGNKPVMGIVQDSLVGVKIMTGDSIFFDLFNLNKLFFQIDFPDSNTLLMKLAYK 476 Query: 548 VKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNT 607 + I +K G+ V L + R + ++ L + +++ + + +++ Sbjct: 477 ERPAILRPKKLFTGKQVFSFLLPEINYHRGDV-LVKKGILLHGSIDKKIVGTSQGSLIHV 535 Query: 608 -CYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIP----EKKHEIISEAEAEVA 662 C + F + + A+ G S+GI+D V EK E I +A+ + Sbjct: 536 LCLENY---EILHFFNSLQLIVHAFLLMHGFSMGIEDAVTDTYTIEKITESIQKAKLDAF 592 Query: 663 EIQEQFQSGLVTAGERYN-------KVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEK 715 + E+ + G + N ++ I A D + D+ E K Sbjct: 593 YLIEECRKGQMKKLPGMNFRETFESRITQILNKARDTSGRYTSDSFAPE--------YRK 644 Query: 716 QVSFNSIYMMADSGARGSAAQIRQLAGMRG------------------LMAKPDGSI-IE 756 FN+I MM ++G++GS I Q+ G K D Sbjct: 645 GKPFNNILMMVEAGSKGSLINISQIIACVGPQNVEGHRIGFSAQRTLPHFHKDDNRPESR 704 Query: 757 TPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGT 816 + ++ GL +++ G R+GL DTA+KTA +GY+ RRL+ ++ ++ D Sbjct: 705 GFVENSYLSGLRPDEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMENCKISFDGSVR 764 Query: 817 HEGIMMTPVIEGGDVKEPLR-------DRVLGRVTAEDVLKPGTADILVPRNTL-LHEQW 868 E + G D + + D D L +T + + Sbjct: 765 SEQ-EIISFNYGDDGFDAAKIERVRVCDSTFYLPFNFDRLINDKGSSPAKISTDSVKTKL 823 Query: 869 CDLLEENSVDAVKVRSV---------VSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIA 919 + L++ + + V V +S + + + R + E +G +A Sbjct: 824 INELKQFTSNLVIKAYVTENTPRLQRLSLNELTELIQK--VKSRYRAALCPMNEMVGTLA 881 Query: 920 AQSIGEPGTQLTM 932 +QSIGEP TQ+T+ Sbjct: 882 SQSIGEPATQMTL 894 >UniRef50_P56763 DNA-directed RNA polymerase subunit beta' n=180 Tax=Embryophyta RepID=RPOC1_ARATH Length = 680 Score = 560 bits (1443), Expect = e-157, Method: Composition-based stats. Identities = 252/602 (41%), Positives = 360/602 (59%), Gaps = 66/602 (10%) Query: 16 EFDAIKIALASPDMIRSWS---------FGEVKKPETINYRTFKPERDGLFCARIFGPVK 66 + ++I L SP I +W+ GEV KP T +Y+T KPE+DGLFC RIFGP+K Sbjct: 6 KHQQLRIGLVSPQQISAWATKIIPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIK 65 Query: 67 DYECLCGKYKRL---KHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSR 123 C CG Y+ + K CE+CGVE +++RR +MG+I+L P H+W+LK LPS Sbjct: 66 SGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLKRLPSY 125 Query: 124 IGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFG---------- 173 I LLD PL+++E ++Y + + ++ +Y ++ Sbjct: 126 IANLLDKPLKELEGLVYCD-FSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGF 184 Query: 174 ---DEFDAKMGAEAIQALLKSMDLE-------QECEQLREELNETNSETKRK------KL 217 + GA AI+ L +DL E +QL EE N RK L Sbjct: 185 DIFRNREISTGAGAIREQLADLDLRIIIENSLVEWKQLGEEGPTGNEWEDRKIVRRKDFL 244 Query: 218 TKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNN 277 +R++L + F+++ +PEWM+L +LPVLPP+LRP++ ++GG+ +SD+N+LYRRVI RNN Sbjct: 245 VRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIEGGKLMSSDINELYRRVIYRNN 304 Query: 278 RLKRLL--DLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQ 335 L LL + P +V +++++QEAVD LLDNG RG+ + + + KS +D+I+GK+ Sbjct: 305 TLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKE 364 Query: 336 GRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIK 395 GRFR+ LLGKRVDYSGRSVI VGP L LH+CGLP+++A+ELF+ F+ L + LA+ I Sbjct: 365 GRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIG 424 Query: 396 AAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCA 455 AK + ++ +VW+IL EV++ HPVLLNRAPTLHRLGIQ+F+P+L+EG+ I LHPLVC Sbjct: 425 VAKSQIREKKPIVWEILQEVMQGHPVLLNRAPTLHRLGIQSFQPILVEGRTICLHPLVCK 484 Query: 456 AYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTR 515 +NADFDGDQMAVHVPL+LEAQ EAR LM S N+LSPA G+PI VP+QD+++GLY +T Sbjct: 485 GFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTS 544 Query: 516 -------------------------DCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKV 550 + + +A YR +L + + + Sbjct: 545 GTRRGICANRYNPCNRKNYQNERIYETNYKYTKEPFFCNSYDAIGAYRQKKINLDSPLWL 604 Query: 551 RI 552 R Sbjct: 605 RW 606 >UniRef50_C4XEN7 DNA-directed RNA polymerase n=2 Tax=Mycoplasma RepID=C4XEN7_MYCFE Length = 1506 Score = 558 bits (1438), Expect = e-157, Method: Composition-based stats. Identities = 283/682 (41%), Positives = 397/682 (58%), Gaps = 92/682 (13%) Query: 12 TKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYEC- 70 K E + I ++LA+ D + WS GEV KPETINY+++KPERDGLF IFGP D +C Sbjct: 26 NKDREIEKITLSLATKDDVLQWSNGEVTKPETINYKSYKPERDGLFDELIFGPTTDNKCP 85 Query: 71 LCGKYKRLKHRGV------ICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRI 124 +CG + G +CEK + RR RMGHI L +P H WF K S I Sbjct: 86 VCGTKYKRSDEGTQCSKTPLCEKSKATILAKISRRSRMGHIHLQNPVVHFWFFKIDHSII 145 Query: 125 GLLLDM---------PLRDIERVLYFESYVVIE-GGMTNLERQQILTEEQ---------- 164 LL + D+E+++Y++S++V+E GG+ L++ I+ + Sbjct: 146 SKLLGLRVAKSSKTVSKTDLEKLIYYKSHIVLESGGIKALQKNAIIDIAEAAVIYRDALL 205 Query: 165 -----------------------------------------YLDALEEFGDEFDAKMGAE 183 Y + + E+ D G++ Sbjct: 206 EIRSKYSEESEEYEIINESLEELESYATSKMGKDYGIDFYEYNEIIHEYSDAI-ISTGSK 264 Query: 184 AIQALLKSMDLEQECEQLREELNETNSETK-----------RKKLTKRIKLLEAFVQSGN 232 AI+ LL+ +DL++E + + +E+ + N K R KL KR+ ++ AF+ SG Sbjct: 265 AIEYLLEHVDLQKEAQLIEDEIKKINRSIKDKNHTGTRGQERSKLYKRLAVINAFINSGQ 324 Query: 233 KPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIV 292 P+ M++ LPV+P DLRPLV LDGGR +TSD+N+LYRR+I RNNRLK+ + AP +I Sbjct: 325 DPKSMLIYDLPVIPADLRPLVQLDGGRHSTSDINELYRRIIIRNNRLKKWEETDAPMLIK 384 Query: 293 RNEKRMLQEAVDALLDN-GRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSG 351 +NE RM+QEAVD+L+DN ++ +T + RPLKS++D + GK+GRFRQNLLGKRVDYSG Sbjct: 385 QNEYRMIQEAVDSLIDNARKKPNPVTSKDSRPLKSISDALTGKKGRFRQNLLGKRVDYSG 444 Query: 352 RSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLEL-RGLATTIKAAKKMVEREEAVVWD 410 RSVI VGP L++HQ G+P++MA +LF+P+I +L +IKA KK VE + ++W Sbjct: 445 RSVIVVGPELKMHQVGIPREMAAKLFEPWIIKELIKGDNQINSIKAGKKAVENLDPIIWP 504 Query: 411 ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHV 470 +++ I+ PVLLNRAPTLHRL IQA+EPVLI GKAI+LHPL C +NADFDGDQMAVHV Sbjct: 505 YVEKAIQGRPVLLNRAPTLHRLSIQAYEPVLIRGKAIKLHPLSCTPFNADFDGDQMAVHV 564 Query: 471 PLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAK--GEGMVLT 528 P++ EA EA+ LM+++ NIL P +GEPII P QD++LGLYY+T++ + K GEG Sbjct: 565 PISDEAVREAKELMLASRNILGPKDGEPIINPGQDIILGLYYLTQEATDDKVIGEGRYFG 624 Query: 529 GPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLP 588 E Y + L SLHARV + I+E K + +TVG+ I I P Sbjct: 625 SYDEMMTAYENKLVSLHARVVLPISEINKRV-IPADGQDRYIVSTVGKFIFNSIFPDSFE 683 Query: 589 YSI-------VNQALGKKAISK 603 + + + GKK IS+ Sbjct: 684 FIFGKYVERNIKEVDGKKVISE 705 Score = 345 bits (884), Expect = 9e-93, Method: Composition-based stats. Identities = 145/449 (32%), Positives = 221/449 (49%), Gaps = 46/449 (10%) Query: 603 KMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVA 662 KML + D++ G+ Y+ SG ++ I D+ + I E + + Sbjct: 840 KMLERVWFRY-TNFVADVLDKLKALGYHYSTISGTTISISDVTTLPSTKDKIKEGDKYIE 898 Query: 663 EIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSI 722 ++++ F+ GL+T ERY I WA D + K + + +T+ N + Sbjct: 899 QLRDYFEQGLLTDDERYALTIQKWAEIKDSIEKDLKEVTKTD-------------PDNPL 945 Query: 723 YMMADSGARGSAAQIRQLAGMRGLMAKPDG-------------SIIETPITANFREGLNV 769 +MM SGARG+++ QLAGMRGLM S +E P+ ++F +GL Sbjct: 946 FMMFTSGARGNSSNFVQLAGMRGLMNNNTKILKADAENERVVRSTVEIPVKSSFLDGLTA 1005 Query: 770 LQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEG- 828 +++ STHGARKGL DTAL TA SGYLTRRLVDVAQ +V+ EDDCGT G + +++ Sbjct: 1006 YEFYSSTHGARKGLTDTALNTAKSGYLTRRLVDVAQGIVLREDDCGTDYGFEVKDILDTK 1065 Query: 829 -GDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVS 887 + E L +R+ GR + + P T ++++ + L+ Q + + + + +V++RSV+S Sbjct: 1066 TNTIIESLGERIEGRFSNVPIYHPRTKEMILDADQLITPQIAEEIVKAGIKSVEIRSVLS 1125 Query: 888 CDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAE 947 C T GVC CYG+DLA ++N GEA+GV+AAQSIGEPGTQLTMRTFH GG A Sbjct: 1126 CYTKNGVCKKCYGKDLALNRVVNIGEAVGVVAAQSIGEPGTQLTMRTFHTGGVAGVEDIT 1185 Query: 948 SSIQVK------------NKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTK--- 992 I K K + + + + E+ + Sbjct: 1186 GGFGRLMELIDAYDSPWGKPAVIAEHYGKITKIEDKKDTLGNASDYQAITLEYEDEEGNT 1245 Query: 993 --ESYKVPYGAVLAKGDGEQVAGGETVAN 1019 + Y L G++V G+ + Sbjct: 1246 QSKIYAARKDRRLRVKKGDKVIPGQKIVE 1274 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 97/355 (27%), Positives = 167/355 (47%), Gaps = 16/355 (4%) Query: 1029 TEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDV 1088 + G + +T D ++ + + + ++R L G Sbjct: 1075 ERIEGRFSNVPIYHPRTKEMILDADQLITPQIAEEIVKAGIKSVEIRSVLSCYTKNGVCK 1134 Query: 1089 LIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDTLARIPQES---GGTKDITGGLPRVADL 1144 G D+ + V + I G L + G +DITGG R+ +L Sbjct: 1135 KCYGKDLALNRVVNIGEAVGVVAAQSIGEPGTQLTMRTFHTGGVAGVEDITGGFGRLMEL 1194 Query: 1145 FEARRPK--EPAILAEISGIVSFGKETKG-------KRRLVITPVDGSDPYEEMI---PK 1192 +A +PA++AE G ++ ++ K + + + D + I K Sbjct: 1195 IDAYDSPWGKPAVIAEHYGKITKIEDKKDTLGNASDYQAITLEYEDEEGNTQSKIYAARK 1254 Query: 1193 WRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKH 1252 R+L V +G++V G I +GP +++L++ +V Y++ EVQ +YRLQG+ I+DK+ Sbjct: 1255 DRRLRVKKGDKVIPGQKIVEGPIILNELLKVADTRSVQNYLLKEVQRLYRLQGITISDKY 1314 Query: 1253 IEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKA 1312 IE+I+RQML K I + G S F G V+ + + L + GK + G + Sbjct: 1315 IEIIIRQMLSKIVITDPGDSKFFSGNLVDIFAYQRESARLISQGKKPPFGEVKIKGAKQT 1374 Query: 1313 SLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQ 1367 L ++SF++AAS+QET ++L A++A + D+L GLKEN+I+G IPAGT + + Sbjct: 1375 PLLSDSFLAAASYQETPKILVNASIAAQSDKLEGLKENIILGHKIPAGTNCNFEE 1429 >UniRef50_B6AIF4 DNA-directed RNA polymerase n=1 Tax=Cryptosporidium muris RN66 RepID=B6AIF4_9CRYT Length = 1803 Score = 557 bits (1436), Expect = e-157, Method: Composition-based stats. Identities = 187/909 (20%), Positives = 344/909 (37%), Gaps = 106/909 (11%) Query: 5 LKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGP 64 + + ++ + +A++ ++ S D I + EV E T P G+ ++ Sbjct: 26 KQIVSPESLRRQIEAVEFSVMSSDQIACSAHMEVIHREIYKPLTTTPMSGGVLDLKLGAH 85 Query: 65 VKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRI 124 D + C CG + G+I+L P H+ + K L + Sbjct: 86 RADAQ---------------CSSCGGNLRTC---GGHWGYIQLQQPVFHVGYFKHLYGVL 127 Query: 125 GLLLDM----PLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKM 180 L LR E+ Y + + + + + Q + + +A+ Sbjct: 128 CCLCKSCGAFLLRGNEKKFYL-NRLKQSYSLAHAYKLQ-FRKLIDRCKKVKICSNCNAQQ 185 Query: 181 GAEA--IQALLKS-MDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWM 237 G I+ L M L + + E + + L +++ + + KP+ + Sbjct: 186 GQLRRLIRPTLDQFMKLTHVVKSESHDYIEDLTPLFVQTLLQKVPYEDLDILEMFKPDRL 245 Query: 238 ILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKR 297 +L+ LPV P +RP V + DL + + + NN +K + + + Sbjct: 246 LLSRLPVPPNCIRPSVTMGEAGSNEDDLTVILSEITDLNNMIKSQMKSGFQTLQLLGNWE 305 Query: 298 MLQEAVDALLDNGRRGRAITGSNK---RPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSV 354 LQ L++ G ++K + + + +KGK+GRFR NL GKRVD+SGR+V Sbjct: 306 FLQLQCTRLINAEAPGVNQLLASKNIPKAGRGICQRLKGKEGRFRGNLSGKRVDFSGRTV 365 Query: 355 ITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI-------------------- 394 I+ P + + + +P +A + P + L + Sbjct: 366 ISPDPNVAVDEVVVPVVIARIMTYPERVNSHNIERLRDAVLNGHNIWPGACYVYKTNGSK 425 Query: 395 ---KAAKKMVEREEAVVWDILD-EVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLH 450 + A + + E + D+++ +I VL NR P+LHRL I + V++ + + + Sbjct: 426 SSLRYANRRIVSERLEIGDVVERHMITGDSVLFNRQPSLHRLSIMSHRVVVMPWRTFRFN 485 Query: 451 PLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGL 510 CA YNADFDGD+M +H+P A+ EA+ LM +N+++P NGEP++ +QD +LG+ Sbjct: 486 ECACAPYNADFDGDEMNLHMPQNELARAEAKYLMGLVHNLVTPRNGEPLVAATQDFLLGI 545 Query: 511 YYMTRDCVNAKGEGM----------VLTGPKEAERLYRSGLASLHARVKVRITEYEKDAN 560 Y +T V + + + + +V + Sbjct: 546 YLLTSRDVFLTRDQFSQYCCYFTDGCIPVELPPPSILKPIELWTGKQVFNVLIRPNPSER 605 Query: 561 GELVAKTSLKDTTVG-RAILWMIVPKG-----LPYSIVNQALGKKAIS----KMLNTCYR 610 ++ LK+ + L + P ++ A+GKK + + R Sbjct: 606 QHIIVNFELKERDYDTKLDLKDLCPNEGFVIVRHSELLAGAVGKKVLGGSKEGLFFHILR 665 Query: 611 ILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPE----KKHEIISEAEAEVAEIQE 666 + + ++ Y A+ G ++GIDD+ E K +++ + ++ E Sbjct: 666 ENSNEKSAEVMGRVARFVSRYLAQKGMTIGIDDVTPNEGLLSAKSKLLEDGYRKIQEEIT 725 Query: 667 QFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMA 726 F+ G + + K ++D ++ + N +M Sbjct: 726 TFELGKMIPHPGC-----TLEDTLEVKVKKILDEIRND---AGKASYSSLPFSNKPLLMY 777 Query: 727 DSGARGSAAQIRQLAGMRGLM--------------AKPDGSI------IETPITANFREG 766 SGA+G I Q+ G P I + +F G Sbjct: 778 LSGAKGQLINIAQMVACVGQQNVAGQRIQNGFTQRTLPHFKINCVDGRSRGFVANSFFSG 837 Query: 767 LNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVI 826 L ++F T R+GL DTA+KTA +GY+ RRL+ +DL V D + I Sbjct: 838 LQPDEFFFHTMSGREGLVDTAVKTAETGYMQRRLIKALEDLCVKYDQTVRSSDGQIIEFI 897 Query: 827 EGGDVKEPL 835 G D P+ Sbjct: 898 YGDDGLNPM 906 Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 92/536 (17%), Positives = 176/536 (32%), Gaps = 100/536 (18%) Query: 836 RDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRS----VVSCDTD 891 +D +L +D+ + ++ ++ H + ++ RS ++ Sbjct: 1332 QDSLLYNQQKQDLSHCVVNNSILLNSSESHPIYKSDKNCHTTKLKSCRSNIEYTITVRHL 1391 Query: 892 FGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQ 951 + + C+ + + I+ G+A+G IAAQSIGEPGTQ+T++TFH G AS Sbjct: 1392 YEFISLCWLKYM--KAIVQPGDAVGAIAAQSIGEPGTQMTLKTFHFAGVASMNVT----- 1444 Query: 952 VKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQV 1011 + + +K ++N++ K++ LK Sbjct: 1445 ------LGVPRIKEIINAATKILTPIIQAPLK---------------------------- 1470 Query: 1012 AGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGG 1071 +P V G + + + T + G+ + L Sbjct: 1471 ---------NPWDYKCAQMVKGKIVKYLLREVCTHIEEVYSPQGVCLNIYLCEKTIQNLY 1521 Query: 1072 KDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGT 1131 D+ + + + + + + I G + + Sbjct: 1522 LDINAYTVRDSIYSHGQICKLRLKEGDIQIINQWTLAVYPPDTIEKGSRSGSTSSNNNLS 1581 Query: 1132 KDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIP 1191 G + LF+ + K +SGI + ++ V+ P G ++ + Sbjct: 1582 LTSGSGPSSLNVLFQLKILKRGLQNVIVSGISGIRRSVI-RQDEVVDPNTGKKRHKYSLA 1640 Query: 1192 -KWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKIND 1250 + L+ G G IS + + G+ A I EV + I+ Sbjct: 1641 VEGYGLSALMGISGLIG--ISTVSNHIIETKEVLGIEAARSVIAQEVLKCMDAYSMDIDL 1698 Query: 1251 KHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGIT 1310 +HI+++ M + D+LGI+ Sbjct: 1699 RHIQLLADVMT----------------------------------------FRGDVLGIS 1718 Query: 1311 KASLAT--ESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 + + S + ASF+ET L EAA + D + G+ E VI+G+ I GTG Sbjct: 1719 RFGIQKMRTSTLMLASFEETNEHLFEAAFQNRIDPVDGVSECVIMGKPIKIGTGAF 1774 >UniRef50_Q9BHM4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pleistophora sp. LS RepID=Q9BHM4_9MICR Length = 897 Score = 557 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 182/783 (23%), Positives = 322/783 (41%), Gaps = 98/783 (12%) Query: 103 GHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTE 162 GHIEL P HI ++ + + +E V ++ S I+ G +N Sbjct: 1 GHIELCKPVFHIGYIGRI-----------KKILESVCFYCSR--IKNGDSNTRSLNSAWS 47 Query: 163 EQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIK 222 + +L D+ G++ + M++ ++ R L+ ++T Sbjct: 48 KNKSKSL------CDSGCGSKQPHFKREGMNIFTTIDENRVVLSGEKVAEIFARITDGDC 101 Query: 223 LLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL 282 F P ++++ + V+PP RP + L+G A DL +I N L++ Sbjct: 102 KALGFDSVNAHPSSLLISSVLVVPPACRPSISLEGFLRAEDDLTHKLSDIIKSNKTLRKN 161 Query: 283 LDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRA-ITGSNKRPLKSLADMIKGKQGRFRQN 341 AP ++R +++LQ V+ +D G+ + RP+KS++ IKGK+GR R N Sbjct: 162 EAEGAPAHVIREYEQLLQFHVNTYMDTEIAGQPQALQKSGRPIKSISSRIKGKEGRIRGN 221 Query: 342 LLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMV 401 L+GKRVD+S RSVIT P + L + G+P+++A+ P + L+ +K Sbjct: 222 LMGKRVDFSARSVITAEPNIDLDELGVPREIAVIETFPEKVNSYNIIRLSELVKRGPAQY 281 Query: 402 EREEAVV--------------------WDILDEVIREHPVLLNRAPTLHRLGIQAFEPVL 441 V+ W + ++ VL NR P+LH++ + + Sbjct: 282 PGANYVIRGDGMKIDLRFTRSVELQIGWTVERHMVDGDYVLFNRQPSLHKMSMMCHRVRV 341 Query: 442 IEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIV 501 +EGK+ +L+ V YNADFDGD+M +H+P + +E R L +ILSP + +PI+ Sbjct: 342 MEGKSFRLNLSVTTPYNADFDGDEMNLHMPQSYITAVELRRLTHVPLHILSPQSNKPIMG 401 Query: 502 PSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANG 561 QD ++G+Y M+ G+ + + +Y + ++ I E+ G Sbjct: 402 IVQDTLVGVYIMS-------GDSIFIEESTTHNLMYT---VDIDSKCTPAILRPERIYTG 451 Query: 562 ELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFA 621 + + L T + IV L +V++ + + +++ Y G K + F Sbjct: 452 KQLFSMVLPPTLIYCTDNIKIVDGVLIKGVVSKKVVGSVRNSLIHILYLDYGAKVALSFF 511 Query: 622 DQIMYTGFAYAARSGASVGIDDMV----IPEKKHEIISEAEAEVAEI-------QEQFQS 670 + I A+ + G S GI D + K +E + +A V + + + + Sbjct: 512 NNIQRVVTAFLSSYGFSCGIGDTIADFDTSMKINEELKDAVDSVNGLLLEGRDRKLRRRP 571 Query: 671 GLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGA 730 GL + V+ I A D +L ++ N++ M +G+ Sbjct: 572 GLSLRETFESSVMQILNKARDTSGTVAQKSLSSD---------------NNLRTMVLAGS 616 Query: 731 RGSAAQIRQLAGMRGLMAKPDGSI----------------------IETPITANFREGLN 768 +GS I Q+ G I + ++ GLN Sbjct: 617 KGSFINISQVTACVGQQTVEGRRIACGYYYHKRTLPHFSRDDLSPRARGFVVNSYLSGLN 676 Query: 769 VLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEG 828 +++ G R+GL DTA KTA +GY+ RRL+ ++L V D GI+ +G Sbjct: 677 PDEFYFHAMGGREGLIDTACKTAETGYMQRRLIKAMENLRVEYDGNVGDGGIVRFGYGDG 736 Query: 829 GDV 831 D Sbjct: 737 NDG 739 Score = 46.2 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 12/91 (13%) Query: 842 RVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGR 901 R +++LK DI++ R LL+ L + + ++ + C + Sbjct: 819 RALIKNMLKYLDMDIIIHR-VLLNNILLSLKSGDGISEEGLKYIQ-CILLKKI------- 869 Query: 902 DLARGHIINKGEAIGVIAAQSIGEPGTQLTM 932 + IN E +G +AAQSIGEP TQ+T+ Sbjct: 870 ---KKARINPMEMVGTLAAQSIGEPATQMTL 897 >UniRef50_A4GYP9 DNA-directed RNA polymerase subunit beta' n=15 Tax=Magnoliophyta RepID=RPOC1_POPTR Length = 689 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 249/540 (46%), Positives = 347/540 (64%), Gaps = 41/540 (7%) Query: 16 EFDAIKIALASPDMIRSWS---------FGEVKKPETINYRTFKPERDGLFCARIFGPVK 66 + ++I SP I +W+ GEV KP T +Y+T KPE+DGLFC RIFGP+K Sbjct: 13 KHQQLRIGSVSPQQISAWTNKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIK 72 Query: 67 DYECLCGKYKRL---KHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSR 123 C CG Y+ + K CE+CGVE +++RR +MG+I+LA P H+W+LK LPS Sbjct: 73 SGICACGNYRVIGDEKEEPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSY 132 Query: 124 IGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFG---------- 173 I LLD PL+ +E ++Y + + ++ +Y ++ Sbjct: 133 IANLLDKPLKQLEGLVYCD-FSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGF 191 Query: 174 ---DEFDAKMGAEAIQALLKSMDLE-------QECEQLREELNETNSETKRK------KL 217 + GA AI+ LL +DL E ++L EE N RK L Sbjct: 192 DTFRNREISTGAGAIRELLADLDLRIILDYSSLEWKELGEEGPTGNEWEDRKVGRRKDFL 251 Query: 218 TKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNN 277 +R++L + F+++ +PEWM+L +LPVLPP+LRP++ +DGG+ +SD+N+LYRRVI RNN Sbjct: 252 VRRVELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNN 311 Query: 278 RLKRLL--DLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQ 335 L LL + P +V +++++QEAVD LLDNG RG+ + + + KS +D+I+GK+ Sbjct: 312 TLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKE 371 Query: 336 GRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIK 395 GRFR+ +LGKRVDYSGRSVI VGP L LH+CGLP+++A+ELF+ F+ L + LA+ I Sbjct: 372 GRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIG 431 Query: 396 AAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCA 455 AK + +E +VW IL EV+R HP+LLNRAPTLHRLGIQAF+P+L+EG+AI LHPLV Sbjct: 432 VAKSKIREKEPIVWGILQEVMRGHPILLNRAPTLHRLGIQAFQPILVEGRAICLHPLVRK 491 Query: 456 AYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTR 515 +NADFDGDQMAVHVPL+LEAQ EAR LM S N+LSPA G+PI VP+QD+++GLY +T Sbjct: 492 GFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTS 551 >UniRef50_Q3SE61 DNA-directed RNA polymerase n=2 Tax=Paramecium tetraurelia RepID=Q3SE61_PARTE Length = 1751 Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 199/961 (20%), Positives = 386/961 (40%), Gaps = 122/961 (12%) Query: 7 FLKAQTKTEEFDAIKIALASPDMIRSWSF-GEVKKPETINYRTFKPERDGLFCARIFGPV 65 F + + ++ L S ++I+ W+ E+K+ +T N P+++GL R+ Sbjct: 8 FTYSTAPIAKVRRVEFGLMSHELIKEWTGDIEIKELQT-NELDGTPKQNGLNDLRM---- 62 Query: 66 KDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIG 125 + C+ CG +TK + G IEL P H+ FL+ + + Sbjct: 63 -----------GVNTNAQKCKTCG----ETKYCQGHFGRIELNKPVYHVGFLQIVKKVLK 107 Query: 126 LLLDM--PLRDIERVLYFESYVVIEGGMTNLERQQILTE----------EQYLDALEEFG 173 + LR + ++S+ + N +R + + ++ + Sbjct: 108 CICHSCGKLRQPQSEDAWQSFQKAKEHRLNRKRLNEIVKLLGRIEKCETSKHKQEENQGN 167 Query: 174 DEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNK 233 D+F + IQA+ + ++ ++ +EL KK+ ++ F + ++ Sbjct: 168 DDFCGEKIPTRIQAINGQIKIQYNTKEAAKELTAERCLEIFKKIRDEDAIILGFTKD-SR 226 Query: 234 PEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVR 293 P +I+ L V+PP +RP + ++ R A +Y+ ++ +NN + A VR Sbjct: 227 PRDLIIKFLLVMPPQVRPAIEMNPARIAQDQYTQIYKSILQKNNEIANCSSDAER---VR 283 Query: 294 NEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRS 353 +++E V ++D+ + G+ I + +PLKS+ +KGK+GRFRQNL+GKRVD+ RS Sbjct: 284 LAPELMRE-VAKIIDSEKAGK-IKMKSTQPLKSIRARLKGKEGRFRQNLMGKRVDFCARS 341 Query: 354 VITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAK--------------- 398 VI+ L + + G+P+ +A +L P + L + K K Sbjct: 342 VISPDANLGMDELGVPQIVADQLTIPEEVTEYNLERVIQLAKTNKIKYVIVPITDPRSKQ 401 Query: 399 --------KMVEREEAVVWDILDEVI------REHPVLLNRAPTLHRLGIQAFEPVLIEG 444 + E+ + I VI VL NR PTLHR+ + ++ Sbjct: 402 RKFQALYFDFTDTEDQIRQKINQGVIVERCLQDGDFVLFNRQPTLHRMSMMGHRVRILPY 461 Query: 445 KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQ 504 +L+ VC YNADFDGD+M +HVP + E E + L I++P + +P++ Q Sbjct: 462 STFRLNLSVCTPYNADFDGDEMNMHVPQSYETIAELKYLAHVPRQIVTPKSNQPVMGIVQ 521 Query: 505 DVVLGLYYMT-RDCVNAKGEGM-------VLTGPKEAERLYRSGLASLHARVKVRITEYE 556 D +LG T RD + + M TG + + ++ + + + Sbjct: 522 DSLLGCCLFTQRDTFLTRDQVMHLMMWNEQFTGELPMPAILKPQELWTGKQI-MSMIIPQ 580 Query: 557 KDANGELVAKTSLKDTTVGRAILWMIVPKG-LPYSIVNQALGKKAISKMLNTCYRILGLK 615 + + L+ + + +G L I N+ L + +++ C+ LG + Sbjct: 581 SINTERGIREDDLRKPNWNADDKSLCIQRGSLVSGIFNKELVGQGAGSVVHLCWLDLGAE 640 Query: 616 PTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQF------- 668 T+ F + +VG D+ +++E E E E++ Sbjct: 641 KTLEFMTSCQRIVNNWLIMHSFTVGCQDIAP---HINLVAETEKRSKEQDEEYIKLLQIF 697 Query: 669 QSGLVTAGERYNK----VIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 724 RY++ ++D + + + M + IN E N +Y Sbjct: 698 LDAKKIQDNRYHQKGKRIMDSFEYSFN------MKLNKVRDDINSKVTETIDQIRNCMYK 751 Query: 725 MADSGARGSAAQIRQLAGMRGLMAKPDGSI--------------------IETPITANFR 764 M + ++G A+ + Q+ + G I + +NF Sbjct: 752 MIWAKSKGEASNLAQITSLVGQQNLESKRIQFGFAYRTLPHFSKFDYGPEARGFVASNFF 811 Query: 765 EGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTP 824 +GL ++F T G R GL DTA+KT+ +GY+ R+L+ +D+ V D + Sbjct: 812 KGLKPTEFFFHTMGGRDGLIDTAVKTSRTGYIQRKLIKAVEDVFVRYDSSCRDSVGAVYQ 871 Query: 825 VIEGGDVK--EPLRDRVLGRVTAEDVLKPGTADILVPR--NTLLHEQWCDLLEENSVDAV 880 G D E + + + V + +++ + + + +++ ++L E+ + + Sbjct: 872 FHYGEDKMAAEFIEHQEIKCVNLSNAQLEEKYELIKEQWFGSEIRQKYQNILTEDVIKDI 931 Query: 881 K 881 + Sbjct: 932 E 932 Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats. Identities = 104/510 (20%), Positives = 192/510 (37%), Gaps = 102/510 (20%) Query: 905 RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGA------------------ASRAAA 946 + + + GEA+G IAAQS+GEP TQ+T+ TFH G AS+ Sbjct: 1070 KKSMAHPGEAVGAIAAQSLGEPTTQMTLNTFHKSGVTGDKNVTLGVPRLQELLDASKKTK 1129 Query: 947 ESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVP-YGAVLAK 1005 S+ + ++ + ++ + K + + L + +S V G +L + Sbjct: 1130 TPSLTIYFDPPLEYAELELKDDKDKKSYLKTEQ--LVHPHKQDDFTQSMLVQMQGRILGQ 1187 Query: 1006 GDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITR-------QTDELTGLSS 1058 G+ + E DP+ ITE FTD I Q + D LS+ Sbjct: 1188 TFGQYIIKSEIYYQSDPNNPLHITEDQ-EDNFTDGIFDQDEAKYKWILFLHMDHQKILSN 1246 Query: 1059 LVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTD----MPAQYFL---------PGKA 1105 L D + +K + N ++ P + + +YF P + Sbjct: 1247 LETWDKIRDSIPKILDETQVKFGISSQNTIVDPDSMNHKYIQIKYFHDYADQKKFKPERG 1306 Query: 1106 IVQLED----------GVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAI 1155 +D + + T+ + +E+ + GG+ ++ + ++ K+ I Sbjct: 1307 KGNFDDEIAFDEENKTKTYVDTPYTILKRLEETIRGYSL-GGISKITRILHSQIEKQFYI 1365 Query: 1156 LAEISGIVSFGK-ETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGP 1214 + G + + KGK +++ ++ N+ E R+E D Sbjct: 1366 NNKTGGFLKQANVDGKGKWKIIEKYLETEGT-----------NLKEILRLEHVDQRRTTT 1414 Query: 1215 EAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDF 1274 + ++I ++ G+ A +V E + ++ G+ IN +H+ ++ M + Sbjct: 1415 DDVYEISQVLGIEAARAALVGETRKIFNHYGIYINYRHLYLLYDWMTHR----------- 1463 Query: 1275 LEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTE 1334 R+ NR GI + S + +SF+ET +L + Sbjct: 1464 --------GRLTAVNRN----------------GINRIP--EVSVLRKSSFEETVEILYD 1497 Query: 1335 AAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 AAV + D +RGL EN+I G+L P GTG Sbjct: 1498 AAVFSEIDHMRGLSENIIFGQLCPHGTGCF 1527 >UniRef50_P17545 DNA-directed RNA polymerase II subunit RPB1-B n=68 Tax=Trypanosomatidae RepID=RPB1B_TRYBB Length = 1766 Score = 553 bits (1426), Expect = e-155, Method: Composition-based stats. Identities = 184/912 (20%), Positives = 340/912 (37%), Gaps = 126/912 (13%) Query: 7 FLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVK 66 +Q + + + ++ + I+S++ V+ ++ + + C ++ P+ Sbjct: 7 LPVSQMELHKVNEVQFEIFKERQIKSYAVCLVEHAKSYANAADQSGEASMIC--VWVPLT 64 Query: 67 DYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFL-------KS 119 CE C + + G+IELA P +I K Sbjct: 65 S--------------NSACETCHRKHPECP---GHFGYIELAEPVFNIGVFDLVLLVLKC 107 Query: 120 LPSRIG-LLLDMPLRDIERVLYFESYV--VIEGGMTNLERQQILTEEQYLDALEEFGDE- 175 + G LLL+ +D+ + L + + + + + ++ T + ++ F Sbjct: 108 VCKTCGALLLNTREQDVHKKLQHMTGLNRLRQVAKMAEAKCRVSTSTEDDMGIDGFDSAP 167 Query: 176 FDAKM--------GAEAIQALLKS-------MDLEQECEQLREELNETNSETKRKKLTKR 220 F+ G A Q + + ++ E+ E + +++ Sbjct: 168 FNGGSGMGPGATRGCGASQPRVSRFYGIYPTLVIKAVHEEQDAEWHADKVRQVLDRVSDD 227 Query: 221 IKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLK 280 L F P ++LTVLPV PP +RP + GG + +L ++ RNN+L+ Sbjct: 228 DARLMGFDPQRCHPRDLVLTVLPVPPPQVRPAISF-GGLRSDDELTHQIMSIVKRNNQLR 286 Query: 281 RLLDLAAPDIIVRNEKRMLQEAVDALLDNGRR-GRAITGSNKRPLKSLADMIKGKQGRFR 339 R + I R + +LQE V +N + ++ + LKSL + +KGK GR R Sbjct: 287 RDKESDVQAAIDR-SRALLQEHVATYFNNASTYYKPTKVNDTKKLKSLTERLKGKYGRLR 345 Query: 340 QNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGL----ATTIK 395 NL+GKRVD+S R+VIT P + + + G+P +A+ L P + + L T+ Sbjct: 346 GNLMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTINKKRLTEFARRTVY 405 Query: 396 AAKKMVEREEAVVWD-----------------ILDEVIREHPVLLNRAPTLHRLGIQAFE 438 + + + + VI VL NR PTLHR+ + Sbjct: 406 PSANYIHHPNGTITKLALLRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLHRMSMMGHR 465 Query: 439 PVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEP 498 ++ +L+ YNADFDGD+M +HVP +L + E +MM N +SP P Sbjct: 466 VRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAP 525 Query: 499 IIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKD 558 + QD +LG Y +T + + + A +K R K Sbjct: 526 CMGIVQDSLLGSYRLTDKDTFLDKYFV-----QSVALWLDLWQLPIPAILKPRPLWTGKQ 580 Query: 559 ANGELVAKTSLKDTTVGRAIL------WMIVPKGLPYSIVNQALGKKAISKMLNTCYRIL 612 ++ + + T R MI L + +++ A +++ + Sbjct: 581 VFSLILPEVNHPATPQDRPPFPHNDSVVMIRRGQLLCGPITKSIVGAAPGSLIHVIFNEH 640 Query: 613 GLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIP----EKKHEIISEAEAEVAEI---- 664 G F + + + G SVG+ D V + ++++ + V +I Sbjct: 641 GSDEVARFINGVQRVTTFFLLNFGFSVGVQDTVADSDTLRQMNDVLVKTRRNVEKIGAAA 700 Query: 665 ---QEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNS 721 ++G+ V + +K + N++ NS Sbjct: 701 NNRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKALSNVRRT---------------NS 745 Query: 722 IYMMADSGARGSAAQIRQLAGMRGL--------------------MAKPDGSIIETPITA 761 +M ++G++G+ I Q+A G M G Sbjct: 746 FKVMIEAGSKGTDLNICQIAVFVGQQNVAGSRIPFGFRRRTLPHFMLDDYGETSRGMANR 805 Query: 762 NFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIM 821 + EGL ++F T R+GL DTA+KT+++GYL R+L+ +D+ D + Sbjct: 806 GYVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQRKLIKALEDVHAAYDGTVRNANDE 865 Query: 822 MTPVIEGGDVKE 833 + + G D + Sbjct: 866 LIQFMYGEDGLD 877 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 93/522 (17%), Positives = 168/522 (32%), Gaps = 100/522 (19%) Query: 901 RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIK- 959 R + GE IG IAAQS GEP TQ+T+ TFH G +S+ ++ ++ Sbjct: 1071 RTKYHQSLTTPGENIGAIAAQSCGEPATQMTLNTFHNAGISSKNVTLGVPRLLELLNVSR 1130 Query: 960 -----------LSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDG 1008 N+ + T + R + Y + Sbjct: 1131 NQKHASMTVSLFPPYDEKRNAQKAQHLIEYCTLESITR---RIQFIYDPDPRHTV----- 1182 Query: 1009 EQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDG----QTITRQTDELTGLSSLVVLDS 1064 V + + + M E +R +++ G + D +T + L + D Sbjct: 1183 --VEADRDILELEWNVMD---ESDAELRIQEVVAGSPWVVRLELDVDMVTDKA-LDMKDV 1236 Query: 1065 AERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARI 1124 + + + I N+V M ++Y +I +L + A + Sbjct: 1237 KQAILRVDE---SYIIETGMANNVRQRTIRMRSRYNEGADSIPKL-------KREIPALL 1286 Query: 1125 PQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSD 1184 + G+P V K+ V ++ DG+ Sbjct: 1287 ARVHLR------GIPGVRRAL----LKDTTEFT-----VDQATGKMSGNKIWAIDTDGTA 1331 Query: 1185 PYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQ 1244 I V E + V + + P ++ L G+ A ++ E+++ Y Sbjct: 1332 LRRAFIG-----VVGEDGKNIINAVKTSSNKVP-EVCSLLGIEAARSKMLTELREAYLAY 1385 Query: 1245 GVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSR 1304 G+ IN +H ++V + +G + A Sbjct: 1386 GLNINYRHYTILVD--------------------------------TICQHGYLMAVSRS 1413 Query: 1305 DLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 GI ++ T + SF+ET +VL AA G+ D +RG+ N+++G GTG Sbjct: 1414 ---GINRS--DTSGPLMRCSFEETVKVLMAAASFGECDPVRGVSANLVLGNQARVGTGLF 1468 Query: 1365 --YHQDRMRRRAAGEAPAAPQVTAEDASASLAELLNAGLGGS 1404 ++A +A A + SL L + S Sbjct: 1469 DLVLNMAALQQAVPQAEAVAPGKDVNVYHSLGSTLQQNIQSS 1510 >UniRef50_C7BEK7 DNA-directed RNA polymerase n=2 Tax=Chlorophyta RepID=C7BEK7_PEDMN Length = 712 Score = 553 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 257/636 (40%), Positives = 355/636 (55%), Gaps = 100/636 (15%) Query: 17 FDAIKIALASPDMIRSWS---------FGEVKKPETINYRTFKPERDGLFCARIFGPVKD 67 +++++++ASP+ IR W+ G+V +T+NY+T KPE GLFC IFGP+ D Sbjct: 13 IESLRLSIASPERIRRWAERTLPSGKIVGQVLNSQTLNYKTLKPELGGLFCETIFGPIYD 72 Query: 68 YECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLL 127 + C CGK R C CGVE T +++RR R+G+I LASP AH+W+ K PS + L Sbjct: 73 FRCACGKAPMKDFR--YCPDCGVEFTSSRIRRYRLGYISLASPVAHVWYFKGSPSYVAHL 130 Query: 128 LDMPLRDI--------------------------------------------ERVLYFES 143 + + R + +++ Y Sbjct: 131 IGLKKRTVSALLYCTQTITGEFEARFNLFNSDQLNSNSELVAKTNFFPPPAFKKLTYLFP 190 Query: 144 YVVIEGGMTNLERQQI---------------LTEEQYLDALEEFGDEFDAK--MGAEAIQ 186 Y E+ + + Y + LE D G+E ++ Sbjct: 191 YYCFRNTYAWTEQTDLQQFLSYMSGTISNEDVLIPAYQNLLEINKDSLREMSWTGSEPVK 250 Query: 187 ALLKSMDLEQECEQLREELNETNSETK-----------------------RKKLTKRIKL 223 L +DL + LR L E R ++ +RIK+ Sbjct: 251 RFLTQLDLNRLELVLRRYLPILQEEIDVLEPSYASLSIEQLLHLRYLLTARARILRRIKI 310 Query: 224 LEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLL 283 + F +S KPEWM+L++LPVLPPDLRP++ + + A SDLN LY++V+ RN R+ R Sbjct: 311 VRNFRKSKAKPEWMLLSILPVLPPDLRPIIEMGKNQVAVSDLNKLYQKVLFRNQRVIRHK 370 Query: 284 DLAA---PDIIVRNEKRMLQEAVDALLDNGRRG-RAITGSNKRPLKSLADMIKGKQGRFR 339 + + +R +R+LQE+VDALL+NGR G IT N RPLKSL+DM+KGK+GRFR Sbjct: 371 RIGSSLNKSNEMRYAQRLLQESVDALLENGRGGSEPITAPNGRPLKSLSDMLKGKKGRFR 430 Query: 340 QNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKK 399 QNLLGKRVDYSGRSVI VGP L+LH+CGLP++MALELF+PF+ +L + T+ AKK Sbjct: 431 QNLLGKRVDYSGRSVIVVGPSLKLHECGLPREMALELFQPFLIRRLIRTKIVRTVLGAKK 490 Query: 400 MVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNA 459 ++ ++ ++W IL VI HP+LLNRAPTLHRLGIQAF+P LI G+AI LHPLVCAA+NA Sbjct: 491 LIAFQDPIIWQILQNVIENHPILLNRAPTLHRLGIQAFQPKLILGRAILLHPLVCAAFNA 550 Query: 460 DFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDC-V 518 DFDGDQMAVHVPL+L+A+ EA LM S NN+LSPA G+PI+ PSQD+VLG YY+T + Sbjct: 551 DFDGDQMAVHVPLSLQARAEAFKLMWSRNNLLSPATGQPILGPSQDMVLGCYYLTTENQK 610 Query: 519 NAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITE 554 N + E Y +H V V+ ++ Sbjct: 611 NLSSNASLFYSFDEVLDAYYQKTLPIHTYVWVKCSD 646 >UniRef50_A9CTM9 DNA-directed RNA polymerase n=1 Tax=Enterocytozoon bieneusi H348 RepID=A9CTM9_ENTBH Length = 1174 Score = 552 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 228/1007 (22%), Positives = 370/1007 (36%), Gaps = 182/1007 (18%) Query: 14 TEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCG 73 T++ D IK L S I + + E+K + T KP G ++ + Sbjct: 4 TKKIDRIKFMLLSDSNINNLALTEIKHKTIHDIETRKPFSGGPLDLKLGVSTTE------ 57 Query: 74 KYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLR 133 CE C + G I L P HI K + + +L+ + Sbjct: 58 ---------TKCETCNQGLQDCP---GHWGKISLILPVFHIALFKEIIN----ILNSICK 101 Query: 134 DIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMD 193 +L + + + ++I ++ E ++ KS D Sbjct: 102 KCSSLLIKNKHDIKSKVNIVDQCKKIKQCYNCNSFNGIVKKSNGFRIFHEFRKSNSKSKD 161 Query: 194 LEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLV 253 +E +ELN L K IK + S P +++ L V P +RP V Sbjct: 162 MEDNKLFC-DELNPLTVYN----LFKNIKETDLLFLSCKNPCNLLIKTLLVPPCCIRPSV 216 Query: 254 PLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRG 313 +D F DL +IN NN ++ + A I + + LQ + +++ Sbjct: 217 DMDQDGFNEDDLTVKLSEIINCNNLIEENIKKGASLITLNEDWDYLQLQIALYINSDLPS 276 Query: 314 RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMA 373 IT ++ +KS+ +KGKQGRFR NL GKRVD+SGR+VI+ P L + Q G+PK++A Sbjct: 277 IHITNNDN--IKSIIHRLKGKQGRFRMNLSGKRVDFSGRTVISPNPNLSIEQIGVPKEIA 334 Query: 374 LELFKPFIYGKLELRGLA-------TTIKAAKKMVERE---------------------- 404 LE+ P L I A ++ E Sbjct: 335 LEMTIPEKVTVFNKEELQILVNNGPNCIDGANYIIRNEVRNNETRTFKIFLKFAKNPKVR 394 Query: 405 EAVVWDILDEVI-REHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDG 463 E V DI++ I VL NR P+LHR+ I A L + + Q + VC YNADFDG Sbjct: 395 ELKVGDIVERHIKDGDIVLFNRQPSLHRMSIMAHRVKLHDNRTFQFNESVCNPYNADFDG 454 Query: 464 DQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKG 522 D+M +H+P T AQ EA LM NI + N EP+I P+QD + G+Y +T ++ + K Sbjct: 455 DEMNIHLPQTKAAQAEAIELMSIKKNICTIKNNEPLISPTQDFITGMYLLTNKNKILTKT 514 Query: 523 EGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMI 582 E L G + + + + + T K G+ + L T+ Sbjct: 515 EFYKLIGHIH----HGKRIIIEPSIIIYKSTTVIKLFTGKQIVDYMLHSVTINLKTKNRN 570 Query: 583 VPKGLPYSI--VNQALGKKAIS------KMLNTCYRILGLKPTVIFADQIMYTGFAYAAR 634 + + + + K I ++ ++ + F + I Y Sbjct: 571 KEDVIIKNSKLIQGTIDKSIIGAENKNSSLIYQLFKQ-SKVECIKFINNISKISIRYIME 629 Query: 635 SGASVGIDDMVI----PEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAAN 690 G S+G+DD+ + K++++ + I ++ G K + Sbjct: 630 YGFSIGLDDIYLSNDLNRSKNKLVLNI---INTINKECNDG---TNRSELKKTSLLNKIR 683 Query: 691 DRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKP 750 + ++ L N+ +MA+ G++GS I Q+ G Sbjct: 684 EDCGTMCLNTLNKN---------------NAAVVMAECGSKGSKINISQMITCVGQQIVS 728 Query: 751 -----------------------DGSIIETPITANFREGLNVLQYFISTHGARKGLADTA 787 D I + +F GL ++F R+GL DTA Sbjct: 729 GMRIQNGMYDKTIPHMKNIPNILDDVIYRGFVYNSFFTGLKAYEFFFHAISGREGLVDTA 788 Query: 788 LKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAED 847 +KTA++GY+ RRL+ ++L + D+ + ++ + ED Sbjct: 789 VKTADTGYMQRRLMKALENLSIKYDNTVRNNNNE-----------------IIQFLYGED 831 Query: 848 VLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGH 907 P + + D Sbjct: 832 GKDPLYDETI--------------------------------------------DATIKK 847 Query: 908 IINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKN 954 I G A+G IAAQSIGEPGTQ+T++TFH G AS ++K Sbjct: 848 FIEPGTAVGAIAAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKE 894 Score = 88.6 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 79/222 (35%), Gaps = 51/222 (22%) Query: 1145 FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV 1204 F + K + +ISG+ ++ I + + E + Sbjct: 997 FNIFKIKNTLLNTQISGL-------TNTNKVFIKETNKDYELLISSSFGDLPYILGTEFI 1049 Query: 1205 ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 1264 I++ +I G+ A I+NE++ G++IN +H+ ++ M K Sbjct: 1050 NPYTTITN---NILEIESTLGIEAARESIINEIEYTIGTHGIQINCRHLMLLADTMTIKG 1106 Query: 1265 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLAT-ESFISAA 1323 + LGIT+ + S + A Sbjct: 1107 HV----------------------------------------LGITRFGMKYFNSTLMLA 1126 Query: 1324 SFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAY 1365 SF++T+ L +AA+ + D + G+ +++I+G+ I GTG Sbjct: 1127 SFEQTSDFLFQAAIEEREDIVSGVSDSIILGKNISIGTGDNI 1168 >UniRef50_Q32RG1 DNA-directed RNA polymerase subunit beta' n=2 Tax=Streptophyta RepID=RPOC1_ZYGCR Length = 715 Score = 552 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 254/573 (44%), Positives = 343/573 (59%), Gaps = 72/573 (12%) Query: 13 KTEEFDAIKIALASPDMIRSWS---------FGEVKKPETINYRTFKPERDGLFCARIFG 63 + I+I LASP+ IRSW+ G V KP TI+Y+T KPE+DGLFC R+FG Sbjct: 3 PEDHLQYIRIGLASPEQIRSWAERRLPNGELIGRVSKPYTIHYQTHKPEKDGLFCERVFG 62 Query: 64 PVKDYECLCGKYKRL---KHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120 P+K C CGKY+ K CEKCGVE T+ +VRR RMG+I+L P H+W+LK+ Sbjct: 63 PIKSGVCACGKYQGTISTKDSPKYCEKCGVEFTEARVRRHRMGYIDLQCPVTHVWYLKNR 122 Query: 121 PSRIGLLLDMPLRDIERVLYFESYVVIE-GGMTNLERQQILTEEQYLDALEEFGDE---- 175 PS I LL+ PL+DIE ++Y++S++ L R + Y D + D+ Sbjct: 123 PSVIARLLNQPLQDIESLVYYDSFLARPVTNEPTLIRLLPTQSKLYKDRSQSTFDKPLEL 182 Query: 176 --------------FDAK-----------MGAEAIQALLKSMDLEQECEQLREELN---- 206 F K GA+ I LL ++L R + Sbjct: 183 FLFDEPWQSALSNFFSPKWFHLIQIREMLTGADVIHKLLSGLNLTNAMFHARNQWKHLAK 242 Query: 207 -------------------------ETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTV 241 + + + ++ + +RI L+ +QS +PEWM+L Sbjct: 243 KAPESQSEVIEAQGPVPQAEEEKQRDQSIQQQKDAVLRRITLIRDLLQSQTQPEWMVLRT 302 Query: 242 LPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQE 301 LPVLPPDLRP++ L G+ SDLN+LYRRV+ RN + + + P I +K++LQ+ Sbjct: 303 LPVLPPDLRPILELKDGQLIRSDLNELYRRVLYRNQLICQF-SVEDPFCISMMQKKLLQQ 361 Query: 302 AVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYL 361 A+D+LL NG G I N RP KSL+D+IKGK+GRFR+NLLGKRVDYSGRSVI VGPYL Sbjct: 362 AIDSLLANGAGGNIIRDRNMRPYKSLSDIIKGKKGRFRENLLGKRVDYSGRSVIVVGPYL 421 Query: 362 RLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPV 421 L+QCGLP++MA+ELF+PF+ L + A +AAK M++R +VW IL ++ +H V Sbjct: 422 SLYQCGLPREMAIELFQPFVIRGLIINHFARNPRAAKSMIQRRHPIVWKILKMIVDDHLV 481 Query: 422 LLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEAR 481 +LNRAPTLHRLG+QAF+PVL+ +AI LHPLVC +NADFDGDQMAVHVPL+LEAQ EA Sbjct: 482 ILNRAPTLHRLGVQAFQPVLVRERAIHLHPLVCTGFNADFDGDQMAVHVPLSLEAQAEAH 541 Query: 482 ALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT 514 LM N+LSP G+ I+VP+QD++LGLY +T Sbjct: 542 LLMSPYFNLLSPGTGDAIVVPTQDMLLGLYALT 574 >UniRef50_Q4SF83 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tetraodon nigroviridis RepID=Q4SF83_TETNG Length = 1745 Score = 551 bits (1419), Expect = e-155, Method: Composition-based stats. Identities = 189/922 (20%), Positives = 331/922 (35%), Gaps = 201/922 (21%) Query: 178 AKMGAEAIQALLKSMDLE--QECEQLREE-------LNETNSETKRKKLTKRIKLLEAFV 228 G Q ++ LE E + + E+ L+ K+++ ++ Sbjct: 1 GHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDMILGMD 60 Query: 229 QSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAP 288 +PEWMI+TVLPV P +RP V + G DL ++ NN+L+R A Sbjct: 61 PKFARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAA 120 Query: 289 DIIVRNEKRMLQEAVDALLDNGRRGRA-ITGSNKRPLKSLADMIKGKQGRFRQNLLGKRV 347 ++ + ++LQ V ++DN G + RPLKS+ +KGK+GR R NL+GKRV Sbjct: 121 AHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRV 180 Query: 348 DYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAV 407 D+S R+VIT P L++ Q G+P+ +A + P I + L ++ + + Sbjct: 181 DFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYI 240 Query: 408 VWDILDEVI--------------------------REHPVLLNRAPTLHRLGIQAFEPVL 441 + D D + V+ NR PTLH++ + + Sbjct: 241 IRDNGDRIDLRFHPKPSDLHLQIGYKASSKALHMCDGDIVIFNRQPTLHKMSMMGHRVRI 300 Query: 442 IEGKAIQLHP--------------------------------------------LVCAAY 457 + +L+ V Y Sbjct: 301 LPWSTFRLNLRYRLKQGRADAKAQGKPLIEFPVCRINALAQSSRYCMYFPDFCFSVTTPY 360 Query: 458 NADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-RD 516 NADFDGD+M +H+P +LE + E + L M I++P + P++ QD + + T RD Sbjct: 361 NADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRD 420 Query: 517 CVNAKGEGMVL---------TGPKEAE---RLYRSG------LASLHARVKVRITEYEKD 558 +GE M L P+ A R +G + H V + + D Sbjct: 421 VFLDRGEVMNLLMFLSTWDGKMPQPAILKPRALWTGKQIFSLIIPGHINVIRTHSTHPDD 480 Query: 559 ANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTV 618 + S DT V ++ L I+ + + +++ Y +G T Sbjct: 481 EDSGPYKHISPGDTKV------IVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITR 534 Query: 619 IFADQIMYTGFAYAARSGASVGIDDMVIPEK----KHEIISEAEAEVAEIQEQFQSGLVT 674 +F I + G S+GI D + K I +A+ +V E+ E+ + + Sbjct: 535 LFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHNNELE 594 Query: 675 AGE-------RYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMAD 727 N+V I A D+ + +L +N+ M Sbjct: 595 PTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSE---------------YNNFKSMVV 639 Query: 728 SGARGSAAQIRQLAGMRGLM--------------------AKPDGSIIETPITANFREGL 767 +G++GS I Q+ + G G + ++ GL Sbjct: 640 AGSKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGL 699 Query: 768 NVLQYFISTHGARKGLADTALKTANSG------YLTRRLVDVAQDLVVTEDDCGTHEGIM 821 ++F G R+GL DTA+KTA +G Y+ RRL+ + ++V D + Sbjct: 700 TPTEFFFHAMGGREGLIDTAVKTAETGKFVCRRYIQRRLIKSMESVMVKYDGTVRNSINQ 759 Query: 822 MTPVIEGGDVK--------------------------EPLRDRVLGRVTAEDVLKPGTAD 855 + + G D + +R L R EDV+K Sbjct: 760 VVQLRYGEDGLAGENVEFQNLATLKPSHRAFEKKFKFDCTNERALRRTLQEDVVKD---- 815 Query: 856 ILVPRNTLLHEQWCDLLEENSVDAVKVRSV---------VSCDTDFGV--CAHCYGRDLA 904 V N + E+ D +R++ + C+ + + + Sbjct: 816 --VMTNAHVQSSLEREFEKMKEDREILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINTR 873 Query: 905 RGHIINKGEAI-GVIAAQSIGE 925 ++ + G++++ S+ E Sbjct: 874 TPTDLSPLRVVEGILSSVSLNE 895 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 90/497 (18%), Positives = 174/497 (35%), Gaps = 100/497 (20%) Query: 904 ARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNV 963 I + GE +G +AAQS+GEP TQ+T+ TFH G +++ + + + Sbjct: 985 FNQSIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVT-----------LGVPRL 1033 Query: 964 KSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPH 1023 K ++N S + S + L+ + R E + + + Sbjct: 1034 KELINISKRPKTPSLT--VFLLGQAARDAER------------------AKDILCRLEHT 1073 Query: 1024 TMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERT-AGGKDLRPALKIVD 1082 T+ +T + + D T+ + E V E + P L ++ Sbjct: 1074 TLRKVT--ANTAIYYDPNPQNTVVEEDQE-------WVNVYYEMPDFDVTRISPWLLRIE 1124 Query: 1083 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIP-------QESGGTKDIT 1135 + TD A I+ ++ + + ++ ES D+T Sbjct: 1125 LDRKHMTDSQTDHGADCREDQCRIMNSDEYKFQEDEEVVDKMDDDVFLRCIESNMLTDMT 1184 Query: 1136 -GGLPRVADLFE--ARRPKEPAILAEISGIVS----FGKETKGKRRLVITPVDGSDPYEE 1188 G+ +++ ++ + + I+ G + ET G + + DP Sbjct: 1185 LQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRT 1244 Query: 1189 MIPKWRQL-NVFEGERVERG-DVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGV 1246 ++ V + G + DG P ++ G+ AV + + E+ V G Sbjct: 1245 TSNDIVEIFTVIQSLSCLIGLRELFDGDRVPSSGFQVLGIEAVRKALERELYHVISFDGS 1304 Query: 1247 KINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDL 1306 +N +H+ ++ M L Sbjct: 1305 YVNYRHLALLCDTMT----------------------------------------CRGHL 1324 Query: 1307 LGITKASLATE--SFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG-Y 1363 + IT+ + + + SF+ET VL EA+ G+ D ++G+ EN+++G+L PAGTG + Sbjct: 1325 MAITRHGINRQDTGPLMKCSFEETVDVLMEASSHGECDPMKGVSENIMLGQLAPAGTGCF 1384 Query: 1364 AYHQDRMRRRAAGEAPA 1380 D + + E P Sbjct: 1385 DLLLDAEKCKYGMEIPT 1401 >UniRef50_UPI00006CF1E9 RNA polymerase Rpb1, domain 2 family protein n=1 Tax=Tetrahymena thermophila RepID=UPI00006CF1E9 Length = 1759 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 201/946 (21%), Positives = 362/946 (38%), Gaps = 151/946 (15%) Query: 5 LKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLF-CARIFG 63 K+ +Q +T + + + ++ S I SW E+K N+ E +G R+ Sbjct: 6 QKYAYSQMETAKVNGVHFSILSEKEIESWCVCEIK-----NFENGNKEDEGFINDKRLGT 60 Query: 64 PVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL--- 120 KD C+ C Q G+I L P HI F+ ++ Sbjct: 61 TSKD----------------ACKTCN----QKNECPGHFGYINLRRPIYHINFINTVKQI 100 Query: 121 ----PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEF 176 + G + + P++ E S LE I ++ L+ L + + Sbjct: 101 LLCVCHKCGAVREPPIKRNES-GKPASKTEFAKLEKYLEVMNISQPKRRLNELYKILGKQ 159 Query: 177 DAKMGAEAIQAL------LKSMDLE-QECEQLREELNETNSETKRKKLTKRIKLLEAFVQ 229 + L +K ++L+ E + ++ + S + ++ K+I+ ++ Sbjct: 160 SKCQNDKCNSYLFVKVSVVKFLNLKVAEKQSDKDAIEYDLSAEQALEILKKIRYADSKKL 219 Query: 230 ---SGNK--------PEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNR 278 G + P +ILT L V PP +RP + + +L Y V+ N + Sbjct: 220 LAYKGQRKHDDDFLQPTNLILTKLLVPPPQVRPSIEMSSNMTCQDELTKCYEEVLKLNAQ 279 Query: 279 LKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRF 338 +K D R +Q V ++DN + + +KS + +KGK+GRF Sbjct: 280 IKDNSDN-------RKLVEQIQSVVARMMDNDKPRLEALKIKSKVVKSFSQRLKGKEGRF 332 Query: 339 RQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAK 398 RQNL+GKRVD+S RSVI+ L L + G+P+ +A L P I + + + K K Sbjct: 333 RQNLMGKRVDFSARSVISPDANLWLDELGVPRSIADSLTVPEIVNQQNINRIRELWKQGK 392 Query: 399 K---MVEREEAVVWDILDEVI------------------------------------REH 419 M E +++ D +I Sbjct: 393 IKSIMKPNREKQIYEAYDAIICSGDRQADDNFDMHVNDDYSYCSQIKIGVIIERALQNGD 452 Query: 420 PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLE 479 VL NR P+LH++ + ++ +L+ V YNADFDGD+M +HVP + E ++E Sbjct: 453 YVLFNRQPSLHKMSMMGHRVRILPYSTFRLNLSVTTPYNADFDGDEMNMHVPQSYETRVE 512 Query: 480 ARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVLTGPKEAERLYR 538 + I++P +P++ QD +LG+ T RD + + M L Sbjct: 513 LGYICHVPRQIVTPKANKPVMGLVQDSLLGVAMFTLRDKFLTREQVMNL------VMWID 566 Query: 539 SGLASLHARVKVRITEYEKDANGELVAKTSLK--------------DTTVGRAILWMIVP 584 + L I + E G+ + + D + + + Sbjct: 567 NWEGDLPM---PAILKPEPLWTGKQIMSLVIPEQMTMTRFKGDKEDDKWFHKQDESIYIY 623 Query: 585 KG-LPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDD 643 KG L +N+A+ +++ + +G + T F + + G ++ D Sbjct: 624 KGELIQGYMNKAIVGDGPGGLVHLIWLDIGHEETKNFMTRCQRVVNNWLIMFGHTISCAD 683 Query: 644 MVIPEK----KHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMD 699 +V EK +I +A + +I+ FQ +K + + ++++ Sbjct: 684 IVPSEKCSEEIEKIRKKAFEKYDKIELDFQDAAYIDQNNMHKAGKKIFDSFEVQVNSILN 743 Query: 700 NLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM------------ 747 L+ E+ + +E + +N M SG++G A + Q+ G+ G Sbjct: 744 ELRQES--EKKAEETIKFKYNQFNKMVWSGSKGKATNLAQVMGLVGQQNIEGARIRNGFS 801 Query: 748 --------AKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRR 799 +G I + NF GL ++F T G R+GL+DTA+KT+ +GY+ R+ Sbjct: 802 RRTLPHFCKDDNGIIARGFVVNNFYIGLKPYEFFFHTMGGREGLSDTAVKTSRTGYIQRK 861 Query: 800 LVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVK--EPLRDRVLGRV 843 LV +D++V D M+ G D E + + +G V Sbjct: 862 LVKALEDVIVRYDGTVRDSQGMIIQTCYGEDSLAGEFIETQKIGEV 907 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 97/525 (18%), Positives = 185/525 (35%), Gaps = 96/525 (18%) Query: 869 CDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGT 928 + + +R +S + + + D + I + GE IG I+AQS+GEP T Sbjct: 1071 AHIRLHLGSKKIVLRHKLSMEVFDKLTKEIF--DKFKKAISHPGETIGAISAQSVGEPTT 1128 Query: 929 QLTMRTFHIGGAASRAAAESSIQVKNK----GSIKLSNVK-------------------- 964 Q+T+ TFH G + R +++ ++K + Sbjct: 1129 QMTLNTFHFAGVSDRNVTLGVPRLQEILDASKNVKTPEMTVFFENGLRKKIFRKDMMSNY 1188 Query: 965 ---SVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAK-GDGEQVAGGETVANW 1020 S ++V R L+L E SY + ++ K D E + + + Sbjct: 1189 DAESFKREYDEIVSQERQEILRLKQEIEYQTISYYINQTRIVYKSKDDEDFQQQDNIFDD 1248 Query: 1021 DPHTMPVITEVSGFVRFTDMIDGQTITRQTD-ELTGLSSLVVLDSAERTAGGKDLRPALK 1079 D + D+ D + D + T + + +L++ R + Sbjct: 1249 DNISD-------------DLEDPIVLIIYFDTQKTTIDTFELLNAKIRKIADDSKKWGNL 1295 Query: 1080 IVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLP 1139 IV+ + + ++ Q Q+++ +L + ES GG+ Sbjct: 1296 IVEKK----QFEKGQIHVKFDSTQLGQGQQNPDSQMNAYSSL--LLFESEFKDAYIGGIQ 1349 Query: 1140 RVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVF 1199 ++ ++ ++ KE E I K +E I N+ Sbjct: 1350 KIQKVYPTQK-KEFRPWVENECICEAPKPGAA--------FFTERKPQEHIFNTSGSNLK 1400 Query: 1200 EGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQ 1259 E +V++ D +I+ + G+ A R IVN+++ V G+ IN +H+ ++ Sbjct: 1401 EVLKVDKVDATRTYSNDIQEIITILGIEAGRRSIVNQIRVVIEPYGIYINYRHLAILAEW 1460 Query: 1260 MLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESF 1319 M + + NR GI + S Sbjct: 1461 MTVRGRLTP-------------------INRN----------------GINRIP--GLSC 1483 Query: 1320 ISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 + +SF+ET +L AA+ ++D+L+G+ EN+I G+ GTG Sbjct: 1484 LRKSSFEETVDILNTAAIFFEKDDLKGVTENIIFGQNCDIGTGCF 1528 >UniRef50_Q3SE62 DNA-directed RNA polymerase n=3 Tax=Paramecium tetraurelia RepID=Q3SE62_PARTE Length = 1368 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 199/1083 (18%), Positives = 394/1083 (36%), Gaps = 167/1083 (15%) Query: 15 EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74 + ++ ++ SP + + ++ + + + T K G R+ ++D Sbjct: 10 RKIGGLQYSILSPQDAINLAEVKIFRDKNYDKMTGKNIEHGPLDLRMGQSLRD------- 62 Query: 75 YKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRD 134 C C T G+I L P H+ F + ++ Sbjct: 63 --------TQCSSC----TLLNECPGHFGYIPLQLPIYHLGFFTHV-----------VKC 99 Query: 135 IERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEF-----------GDEFDAKMGAE 183 ++ + Y V + N Q+++ Q + ++ E Sbjct: 100 LKCLCYKCGQVRLTPDEINQLTQKMVHCIQTRSYNAQLKVFKKVLKKCRSNKQCPHCYCE 159 Query: 184 AIQALLKSMDLEQECEQLRE-ELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVL 242 I K + L ++N + + + K+ + L N ++ +++ Sbjct: 160 QIGEAKKLAKGDAGKIILDTMDINALYAWNQFSNIPKQHQFLFCINPFLNDLSDLLTSII 219 Query: 243 PVLPPDLRPLVPLDGGRFA-TSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQE 301 P P ++RP L A DL + ++ N+ L++ + + + + + Q Sbjct: 220 PAPPNNIRPSKMLSNTTKADEDDLTMKLKTILYHNDLLQKQIKEGKDGMSILKTQFLTQA 279 Query: 302 AVDALLDNGRRGRAITGS--NKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP 359 ++ S K ++ + +KGK+GR R NL GKR +++ RSVI+ P Sbjct: 280 HYFHYFNSETPRLPQFSSKDGKVDIRGIYQRLKGKRGRLRGNLSGKRAEFTARSVISPDP 339 Query: 360 YLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMV------------------ 401 L + Q +P+ +A L P L ++ + ++ + Sbjct: 340 NLAIDQVTIPQHIACILTVPETVTALNIKKMRDYVQNGPSIYPGAKFVKLGGVNYNLQFA 399 Query: 402 EREEAVVWDILDEVIREH-----PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAA 456 R + +V+ H V+ NR P+LHR+ + AF + + ++ + VC Sbjct: 400 RRAHLAYKLKIGDVVDRHLLSEDIVIFNRQPSLHRISMMAFRARVDKWHTLRFNECVCTP 459 Query: 457 YNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-R 515 +NADFDGD+M +H+P T EA+ EA LM N+ + +GE ++ QD + + +T + Sbjct: 460 FNADFDGDEMNIHLPQTYEARSEALILMDVKKNLKTIKSGESLVCLLQDFLTTAWLITNK 519 Query: 516 DCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVG 575 D ++ + M A + L A I + ++ G+ V L Sbjct: 520 DVFYSREQFMQFC----AAFSDSNEQIDLPA---PTILKPKQLWTGKQVINALLVPNRKT 572 Query: 576 RAILWMIVPKG---------------------LPYSIVNQALGKKAIS----KMLNTCYR 610 R +L + + +V +GKK + + R Sbjct: 573 RLVLNLEAKESNAFKGKLDYLWMDPGDGYVVFDKCELVCGNIGKKVLGASKLGLFYALIR 632 Query: 611 ILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQS 670 + + + + G ++GI D++ P+ E I ++ + + +Q Sbjct: 633 DNSTQIAASVMQRFAKLSSRWISHYGMTIGIGDVMAPKSLIEQIHQSTEQSYLQCKHYQR 692 Query: 671 GLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGA 730 L+ A + A N +S E V ++ ++ K S N + +M GA Sbjct: 693 SLIDADPGLTVEQTLEAKVNKTLSDV------REQVGSKCQEQLK--SDNKVLIMYLCGA 744 Query: 731 RGSAAQIRQLAGMRGLMA-----KPDGSI-----------------------IETPITAN 762 +GS + Q+ G G P+G + + + Sbjct: 745 KGSNVNVAQMIGCVGQQVISGKRVPEGFTGRTLPHFKDCGDRYPNLDILHPKAKGFVKNS 804 Query: 763 FREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGI-M 821 F G++ ++++ R+GL DTA+KTA +GY+ RRLV + +DL + D Sbjct: 805 FYTGMDAIEFYFHNMAGREGLTDTAVKTATTGYMQRRLVKMLEDLHIAYDLTVRSCDTKE 864 Query: 822 MTPVIEGGDVKEPLR----------DRVLGR---VTAEDVLKPGTADILVPRNTL---LH 865 + G D +PL +L V ++ + +L+ + L + Sbjct: 865 IVQFRYGEDGLDPLAVEDANEVIKLQNLLTNSFTVLRKNQILLNKEHMLIKLDELFMIIE 924 Query: 866 EQWCDLLE--ENSVDAVKVRSVVSCDTDFGVCAHCY-------GRDLARGHIINKGEAIG 916 E+ LE E + + K R + + + ++ G ++G Sbjct: 925 ERHKKFLENYEATYEKEKKRVQALFKSTNQQVSEKQLQWFIRSWMERFLTMVMAPGTSVG 984 Query: 917 VIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVIT 976 I +QSIGEP TQ+T++TFH G A + + ++ ++ K + + + Sbjct: 985 PITSQSIGEPATQMTLKTFHSAGVAGMSITQGVPRLNE----IINASKEIKTPQINVKLI 1040 Query: 977 SRN 979 +R Sbjct: 1041 NRQ 1043 Score = 79.4 bits (194), Expect = 9e-13, Method: Composition-based stats. Identities = 36/148 (24%), Positives = 57/148 (38%), Gaps = 42/148 (28%) Query: 1219 DILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGE 1278 +I G+ A + IVNEV + + I+ +HI ++ M K I Sbjct: 1235 EIQSALGIEAARQSIVNEVYTTMQSHSISIDIRHILLLAELMTFKGRI------------ 1282 Query: 1279 QVEYSRVKIANRELEANGKVGATYSRDLLGITKASLA--TESFISAASFQETTRVLTEAA 1336 LG T+ + S + ASF++T V AA Sbjct: 1283 ----------------------------LGFTRQGIDQLKNSALMLASFEKTMDVFFNAA 1314 Query: 1337 VAGKRDELRGLKENVIVGRLIPAGTGYA 1364 + GK+D + G + VI+G+ +P GTG Sbjct: 1315 IQGKQDSMNGASQRVIIGQNVPQGTGMF 1342 >UniRef50_A1YIC5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Chytriomyces hyalinus RepID=A1YIC5_9FUNG Length = 960 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 184/820 (22%), Positives = 323/820 (39%), Gaps = 121/820 (14%) Query: 104 HIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEE 163 HI L P +I ++K++ + +E V + + + ++ G + R+ + ++ Sbjct: 1 HILLNCPMYNIGYIKTV-----------KKILECVCHRCARLRLQPG-DHKYRKLTMIKD 48 Query: 164 QYLDALEEFGDEFDAKM-GAEAIQALLKSMDLEQECEQLREE-------LNETNSETKRK 215 ++ A E ++ + E ++ +E +Q + + L +++ + Sbjct: 49 KFKYAWESCKNKVVCEYPDCETQLLPIRRHGIELFFDQKKVDNKLPRVPLYADQAKSILE 108 Query: 216 KLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLD--GGRFATSDLNDLYRRVI 273 K+T L ++PEWMI TV+PV PP +RP V +D G DL + +I Sbjct: 109 KITDETCRLLGLNPDSSRPEWMIFTVIPVPPPCMRPSVHIDVANGGKGEDDLTHMLTNII 168 Query: 274 NRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAIT-GSNKRPLKSLADMIK 332 NN L + K LQ + +DN G R +KSL+ +K Sbjct: 169 RYNNLLGKNESSKTA----IEYKEQLQIHITTYIDNEVSGVPPALQKGGRMIKSLSARLK 224 Query: 333 GKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLAT 392 GK+GR R +L+GKRVD+S R+VIT P++ + + G+P +A L P L + Sbjct: 225 GKEGRIRGHLMGKRVDFSARTVITGDPHISIEEVGVPLSVAKTLTFPERVTSYNLDRMQA 284 Query: 393 TIKAAK-----KMVEREEAVVWD---------------ILDEVIREHPVLLNRAPTLHRL 432 + AK + V E D + ++ VL NR P+LH++ Sbjct: 285 LVNNAKNYPGARYVINERGRRIDLEVAKTTPLIEIGDIVERHMVTGDTVLFNRQPSLHKM 344 Query: 433 GIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILS 492 + A ++ + +L+ VCA YNADFDGD+M +H+P + E E + L M ++ ++S Sbjct: 345 SMMAHIVRVMPYSSFRLNVNVCAPYNADFDGDEMNLHMPQSYETVAELQTLSMVSSLLVS 404 Query: 493 PANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGM-----------VLTGP---KEAERLYR 538 P + +P+ QD + G+ +T E M V+ P K Sbjct: 405 PQSNKPVNGLVQDALCGIRKLTMRDTFVNFEDMMDLVMCLKEFPVIPPPAIFKPIPLWTG 464 Query: 539 SGLASL-------------HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPK 585 + SL HA + KD N K + + +++ Sbjct: 465 KQIISLCLPDIDLTGNTLTHADHEDIFRSTTKDLNETCTRKAESEFYSATPTDSRVLIQS 524 Query: 586 GLPYS-IVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDM 644 G+ + + + +++ Y G + F D A+ SG SVGI D Sbjct: 525 GIIVHGYLCKKTVGASSGGIVHIIYNDHGPRAACDFIDNSSRIVNAWLTNSGFSVGIGDA 584 Query: 645 VIPEKKHEIISEAEA----EVAEIQEQFQSGLVTAG-------ERYNKVIDIWAAANDRV 693 ++ E H + S +V + E + + + + N+++ + A A D Sbjct: 585 LVSEITHAVFSSTIDTQLHKVQKTIESYHANELKPEGNFDCEQTKENQIVGLLAKARDSA 644 Query: 694 SKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGS 753 K + N++ M ++G++GS I Q++ G Sbjct: 645 GKTTL---------------ISGHPDNNLKQMVEAGSKGSVLNICQVSACVGQQMVEGKR 689 Query: 754 I--------------------IETPITANFREGLNVLQYFISTHGARKGLADTALKTANS 793 I + +F +GL + F G R+GL DTA+KTA + Sbjct: 690 IPFGFKDRTLPHFTKYDHSPAARGFVRNSFVKGLTPSELFFHAMGGREGLIDTAIKTAET 749 Query: 794 GYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKE 833 GY+ RRLV +D+ V D + + G D + Sbjct: 750 GYIQRRLVKALEDITVKSDGTVRNSRDDIIQFYYGEDGFD 789 >UniRef50_Q4A7B0 DNA-directed RNA polymerase subunit beta' n=5 Tax=Mycoplasma RepID=RPOC_MYCH7 Length = 1412 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 286/679 (42%), Positives = 386/679 (56%), Gaps = 86/679 (12%) Query: 1 MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60 M + A+ I +ALA+P+ + WS GEV +PETINY+TFKPER GLF Sbjct: 1 MNTKVSRQYAKISENSIQKISLALATPEDVLEWSRGEVHRPETINYKTFKPERGGLFDEL 60 Query: 61 IFGPVKDYEC-LCGKYKRLKHRGVIC---EKC---GVEVTQTKVRRERMGHIELASPTAH 113 IFGP+ DY+C +CG+ R + +C ++C G + RR MGHI L +P H Sbjct: 61 IFGPLVDYKCSVCGRKYRKSNENQLCIATKECKIRGSRILSKMARRYSMGHIALNAPILH 120 Query: 114 IWFLKSLPSRIGLLLDMPLRD-------------IERVLYFESYVVIE-GGMTNLERQQI 159 WF K S I LL + + + IE ++Y++S++V+E GG+ +LE+ +I Sbjct: 121 FWFFKIDHSIIAKLLGLKVFEGNSKVPTTITKTAIENLIYYKSHIVLETGGLKSLEQNKI 180 Query: 160 LTEEQ----YLDAL-------------------------------------------EEF 172 + + Y +AL E Sbjct: 181 IDISEAGLIYKNALIEIIEFYPPGSEEHNALAESISELADVTSSKIGREYGVDYYELNEI 240 Query: 173 GDEFD---AKMGAEAIQALLKSMDLEQECEQLREELNETNSE-----------TKRKKLT 218 +EF GA AI+ LL +DL E + EL + KR KL Sbjct: 241 IEEFSSARIATGALAIEYLLDKIDLRAEKAAVEAELAGVQKQIYKNKKIILKNQKRDKLY 300 Query: 219 KRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNR 278 KR++++ AF+ SG P+ MI+ LPV+P DLRPLV LDG R +TSD N+LYRR+I RNNR Sbjct: 301 KRLQVINAFINSGQDPKMMIIRNLPVIPADLRPLVQLDGSRHSTSDCNELYRRIIIRNNR 360 Query: 279 LKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRG-RAITGSNKRPLKSLADMIKGKQGR 337 LKR AP II++NE RMLQEAVDAL+DN ++ +T RPLKS++D + GK+GR Sbjct: 361 LKRWKAAHAPVIIIQNEMRMLQEAVDALIDNQKKSTNQVTTKEGRPLKSISDALTGKKGR 420 Query: 338 FRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAA 397 FRQNLLGKRVDYSGRSVI VGP L++HQ GLP+KMA LF+P+I L +IK A Sbjct: 421 FRQNLLGKRVDYSGRSVIVVGPKLKMHQAGLPRKMAAVLFEPWIIRNLIQEKKVGSIKMA 480 Query: 398 KKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAY 457 +KM+E E ++W + +VI+ P++LNRAPTLHRL IQAFEPVL+ KAIQLHPLV A + Sbjct: 481 RKMIEEENPIIWPHVAKVIQNKPIILNRAPTLHRLSIQAFEPVLVRAKAIQLHPLVTAGF 540 Query: 458 NADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDC 517 NADFDGDQMAVH+P++ EA E + LM + NIL P +GEPI+ PSQD+VLGLYY++++ Sbjct: 541 NADFDGDQMAVHIPISPEAIRETQELMFADKNILGPKDGEPIVNPSQDMVLGLYYLSQEK 600 Query: 518 VNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRA 577 AKGEG + + + Y LHARV + +E+ +TVG+ Sbjct: 601 AGAKGEGSFFSTYEAMLKAYEFRSVELHARV---VLPFEQVKPFIAKTMRGHLISTVGKF 657 Query: 578 ILWMIVPKGLPYSIVNQAL 596 IL I P P+ + Sbjct: 658 ILNNIFPANFPFIFDDNVD 676 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 149/539 (27%), Positives = 239/539 (44%), Gaps = 59/539 (10%) Query: 512 YMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKD 571 + ++ + + + + LY ++ V + ++ + Sbjct: 729 LLAKEDIATVIDQLDFGNYQNCVLLYEKLRDYKKQKLPVPHLSKLSEFTIFEYSQLYKQL 788 Query: 572 TTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAY 631 G + ++ +++L + D+I GF Y Sbjct: 789 QQNGPVESYRVLEDH-------------EKAELLEKIWFKYNNMVCS-ILDKIKDLGFHY 834 Query: 632 AARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAAND 691 + SG S+ I D+ + KKHE I E E + ++ + GL+T ERY I W + Sbjct: 835 STLSGTSIAISDIKMAPKKHEFIKEGENYINKLNTFYAKGLITDDERYVLAIAKWTQIKN 894 Query: 692 RVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPD 751 + + + +++ + NS+ MM SGARG+ + QLAGMRGLMA Sbjct: 895 DIQEDLNQSIKDDNQ-------------NSLVMMMKSGARGNISNFVQLAGMRGLMANNV 941 Query: 752 G-------------SIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTR 798 SI+E P+ ++F EGL +++ STHGARKGL DTAL TA SGYLTR Sbjct: 942 KALKVDAENERVVRSIVEVPVKSSFLEGLTSFEFYSSTHGARKGLTDTALNTAKSGYLTR 1001 Query: 799 RLVDVAQDLVVTEDDCGTHEGIMMTPVIEG--GDVKEPLRDRVLGRVTAEDVLKPGTADI 856 RLVDVAQ++VV +DC + G ++ +I+ + PL +R+ GR +DV Sbjct: 1002 RLVDVAQNIVVVAEDCFSDFGFVVKDIIDTKTNTIIVPLLERIEGRFLNKDVYD-SRGIK 1060 Query: 857 LVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIG 916 L T++ Q + + V++RS++SC VC CYG+DLA +++ GEA+G Sbjct: 1061 LASAGTMVDLQTAKKIVAAGIKKVEIRSILSCHIKNSVCKKCYGKDLATNRLVSIGEAVG 1120 Query: 917 VIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNK----------GSIKLSNVKSV 966 +IAAQSIGEPGTQLTMRTFH GG A+ + K+S + Sbjct: 1121 IIAAQSIGEPGTQLTMRTFHTGGVANVEDITGGFTRLIELIDSHEHPWGKPAKISPYYGI 1180 Query: 967 VNSSGKLVITSRNTELKLI------DEFGRTKESYKVPYGAVLAKGDGEQVAGGETVAN 1019 + L + + LI + + + ++ L G++V G+ + Sbjct: 1181 ITKISDLAEKNAANKGFLITIEYKTSKNEKAEHIIRIEQSQKLRVKVGDKVIPGQKLVE 1239 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 94/370 (25%), Positives = 168/370 (45%), Gaps = 16/370 (4%) Query: 1011 VAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAG 1070 V + +P++ + G D+ D + I + T + Sbjct: 1024 VVKDIIDTKTNTIIVPLLERIEGRFLNKDVYDSRGI-KLASAGTMVDLQTAKKIVAAGIK 1082 Query: 1071 GKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDTLARIPQES- 1128 ++R L G D+ + V + I G L + Sbjct: 1083 KVEIRSILSCHIKNSVCKKCYGKDLATNRLVSIGEAVGIIAAQSIGEPGTQLTMRTFHTG 1142 Query: 1129 --GGTKDITGGLPRVADLFEARRPK--EPAILAEISGIVS----FGKETKGKRRLVITPV 1180 +DITGG R+ +L ++ +PA ++ GI++ ++ + +IT Sbjct: 1143 GVANVEDITGGFTRLIELIDSHEHPWGKPAKISPYYGIITKISDLAEKNAANKGFLITIE 1202 Query: 1181 DGSDPYEE-----MIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVN 1235 + E+ I + ++L V G++V G + +GP ++L + + Y++ Sbjct: 1203 YKTSKNEKAEHIIRIEQSQKLRVKVGDKVIPGQKLVEGPIILKELLAVSDARTLQNYLLK 1262 Query: 1236 EVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEAN 1295 E+Q +YR+QG+ I+DK+IE+I+RQML K I+ G S+F G V+ S + N +L + Sbjct: 1263 EIQRIYRMQGISISDKYIEIIIRQMLSKVQIIENGDSNFFIGSIVDISDYQEVNGQLISQ 1322 Query: 1296 GKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGR 1355 K A + + G + L + SF++AAS+QET+++L + ++ + D+L GLKEN+IVG Sbjct: 1323 NKNPAFGNVIVKGAKQIPLLSNSFLAAASYQETSKILVHSVISSQIDKLEGLKENIIVGH 1382 Query: 1356 LIPAGTGYAY 1365 IPAGT Y Sbjct: 1383 KIPAGTNSNY 1392 >UniRef50_UPI000179161A PREDICTED: similar to DNA-directed RNA polymerase I largest subunit n=1 Tax=Acyrthosiphon pisum RepID=UPI000179161A Length = 1606 Score = 536 bits (1382), Expect = e-150, Method: Composition-based stats. Identities = 297/1650 (18%), Positives = 542/1650 (32%), Gaps = 344/1650 (20%) Query: 7 FLKAQTKTEEFDAI--KIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGP 64 F + F I + S + ++ S + + +P + GL+ +R+ Sbjct: 2 FYHDFYNVDPFKPISMEFNTFSSEEVKKLSVARIDSLISFT-PLGEPVQGGLYDSRLGSI 60 Query: 65 VKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWF-------L 117 GK C C + + GHIEL P + F L Sbjct: 61 ----HMSSGK----------CSTCNQ---NSVLCSGHFGHIELPCPVINPIFTTAVIHIL 103 Query: 118 KSLPSRIGLLL-----------DMPLRDIERVLY-FESYVVIEGGMTNLERQQILTEEQ- 164 K +L + L D ++ + E I G + ER+ + E + Sbjct: 104 KISCLSCYCVLLPRESTILLAAQLKLLDNGQLTHAHELATEINGLCEDDERKLSVDELET 163 Query: 165 ----------------YLDALEEFGDEFDA--------KMGAEAIQALLKSMD------- 193 Y+ +E F A + G + L ++ Sbjct: 164 FISLYLKERLQENNGSYVKCADEIRQTFIAETINQVARRTGCMHCKQPLSTISKSFSTIT 223 Query: 194 -----LEQECEQLREELNETNSETKRKKL-TKRIKLLEAFVQ--SGNKPEW----MILTV 241 ++ ++++E L + ++L K + A + +G K E+ +T Sbjct: 224 ISQASKSKKEKKIKEYLFPADIREHMRQLWVKEKHFISALLPVLAGLKIEYPTDVCFMTE 283 Query: 242 LPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL------------------- 282 + V P +LRP + + G + S N Y+ ++ ++ + Sbjct: 284 ILVTPSNLRPNLMVKG-KLVESPRNSTYKSILREAKVIQYIWLLQDQKEGQEISSEITEL 342 Query: 283 ---LDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFR 339 V+ LQ VDALLD R+ ++ P L +++ K G R Sbjct: 343 VNDSQGKDSIEKVQIGMHNLQMCVDALLDGNL-FRSYNNKDQAPRIGLKQLLEKKSGIIR 401 Query: 340 QNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGL------ATT 393 QN++GKRVDY RSVIT PYL + G+P + A +L P +GL Sbjct: 402 QNMMGKRVDYFARSVITPDPYLDTDEIGIPVEFAKKLTYPVAVTDWNNKGLHGVVLNGPN 461 Query: 394 IKAAKKMVEREEAVVW----------------------------DILDEVIREHPVLLNR 425 M+E + +V + VI +L+NR Sbjct: 462 HYPGANMIETDAGIVKWLSATNKSRREALSKTLFYKGPNSRGPQIVHRHVIDGDMMLVNR 521 Query: 426 APTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 484 P+LH+ I A +++G K ++LH C AYNADFDGD+M H+P + A+ EA+ + Sbjct: 522 QPSLHKPSIMAHRVKVLKGEKTLRLHYANCKAYNADFDGDEMNAHLPQSELAKCEAKEIA 581 Query: 485 MSTNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVL---------------T 528 + L P +G P+ QD ++ MT R + E M Sbjct: 582 SAVYQYLVPRDGTPLSGLIQDHIISSVRMTVRGHFFTRREYMHFVYQALSSFDRAIKTVP 641 Query: 529 GPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAI---------- 578 + SG + + + +T + L++K+ L+ Sbjct: 642 PAIIKPVMLWSGKQIISTLI-INLTPLNQKTYINLMSKSKLEQKCWRNPNNYEYPDLLSE 700 Query: 579 LWMIVPKG-LPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGA 637 IV G L I+++ + +++ Y + G K + Y Sbjct: 701 FNFIVRNGNLLSGILDKNHIGASTYSLVHCFYELYGGKYSAQLLSAFSKLFTVYLQCDAF 760 Query: 638 SVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAM 697 ++G++D+++ EK + A I E +G + A E A N +++++ Sbjct: 761 TLGVEDILVTEKADHLRQTA------IDESKTAGTLAAQESLGIEYMGEDAMNIKLAESY 814 Query: 698 MDNLQTETVINRDGQEEKQ------------------VSFNSIYMMADSGARGSAAQIRQ 739 + +++R+ ++ Q N++ +M SGA+GS Q Sbjct: 815 SKSSHFPVLVDRNYKKHLQPFTNKITRACIPKGLLQPFPNNNLQLMVQSGAKGSTVNTIQ 874 Query: 740 LAGMRGLM--------------AKPDGSIIET------PITANFREGLNVLQYFISTHGA 779 ++ G + P +T I + F G+ ++F Sbjct: 875 ISCCLGQIELEGKRPPMMISGRTLPSFPPFDTLPKAGGFIGSRFMTGIQPQEFFFHCMAG 934 Query: 780 RKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRV 839 R+GL DTA+KT+ SGYL R LV + L+V D + + G D E + Sbjct: 935 REGLIDTAVKTSRSGYLQRCLVKHLESLIVNYDMTVRDSNGSIVQYLYGEDGLEVTKSSF 994 Query: 840 L---------GRVTA----------------EDVLKPGTADILVPRNTLLHEQWCDLLEE 874 G V + +D L+ + +++ +N ++ ++ Sbjct: 995 FKEKQFDFLAGNVNSFKALKKIRNDECYKELDDKLEEIKSAMIIKKNISRQSEFLSWCKQ 1054 Query: 875 NSVDAVKVRSVVS---CDTDFGVCAHCY--GRDLARGHIIN------------------- 910 S K + C D +C Y D+ + + +N Sbjct: 1055 TSKVKNKKHPKIKNGRCVQDIKICNKWYEINEDVKKSNGLNDNDKQIAKESIRLKAMAAT 1114 Query: 911 --KGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNK------------G 956 GE +G IAAQS+GEP TQ+T+ TFH G +++ Sbjct: 1115 AAAGEPVGCIAAQSVGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMMATKTIKTPSM 1174 Query: 957 SIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKES---------------YKVP--- 998 I ++V N + L LK + + +E + +P Sbjct: 1175 EIPFFQSENVKNEADFLRKLMTKISLKDVLSKVQVREKVMLNPIRRMCYDLTLHLLPHRC 1234 Query: 999 YGAVLAKGDGEQVAGGETVANWDPHTMPV---ITEVSGFVRFTDMIDGQTITRQ------ 1049 Y + + + + M V SG + + I R+ Sbjct: 1235 YESTTHVTPKAVMRFIKNSFSESLKKMFVKNLSKNFSGELISEQTKNAIKINREKNNDND 1294 Query: 1050 TDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLP------- 1102 D L S + + + A D P Sbjct: 1295 EDALLDESEPQETKAKNQVDSDSESEAGEFDSAAMKRKAQTEEYDYEKDEDDPMSDEEAE 1354 Query: 1103 -GKAIVQLEDGVQISSGDTLAR-------IPQESGGTKDITGGLPRVADLFEARRPKEPA 1154 + +D I S + I E +D + + + K+P Sbjct: 1355 INDKQSECDDSPNIESQPIKIKHNTSDNEINIEDDNIEDFVNNKDYSQIVIDVKCGKKPY 1414 Query: 1155 ILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQ-LNVFEGERVERGDVISDG 1213 A I VS E K + IP + + E +++ ++G Sbjct: 1415 TFANIQ--VSIPLEYKRIDLTGLIKDLMGRVIIHEIPGINRAILTEEDDKIILK---TEG 1469 Query: 1214 PEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD 1273 ++ R + + N++Q + G++ ++ VI++++ + Sbjct: 1470 SRGVAELFRFANILDLNSLYCNDIQMMLNTYGIEAANR---VIIKEVKNVFKV------- 1519 Query: 1274 FLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLT 1333 G V+ + + + +GK A + G S + SF+ T L Sbjct: 1520 --YGINVDTRHLSLIADYMTYDGKYKALNRVGMNG-------CPSPLQQMSFESTLNYLK 1570 Query: 1334 EAAVAGKRDELRGLKENVIVGRLIPAGTGY 1363 ++ V G +D L +I+G+ G+G Sbjct: 1571 KSTVRGLKDNLVSPSSTLIIGQQAQIGSGL 1600 >UniRef50_B7T2U0 DNA-directed RNA polymerase n=68 Tax=Magnoliophyta RepID=B7T2U0_9ROSI Length = 707 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 247/632 (39%), Positives = 346/632 (54%), Gaps = 91/632 (14%) Query: 13 KTEEFDAIKIALASPDMIRSWS---------FGEVKKPETINYRTFKPERDGLFCARIFG 63 + ++I L SP I +W+ GEV + + I+ T KP+ GL C RIFG Sbjct: 3 DQSKHQQLRIGLVSPQQISAWANKTLPNGTIVGEVTEIDPIDLETNKPKVGGLLCERIFG 62 Query: 64 PVKDYECLCGKYKRL-----KHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLK 118 P+K C CG + K + C CGVE +++RR +MG+I+LA P H+W+L+ Sbjct: 63 PIKSGVCACGISGKFGDPNEKRKRTFCGDCGVEFANSRIRRYQMGYIKLACPVTHVWYLR 122 Query: 119 SLPSRIGLLLDMPLRDIERVLY--FESYVVIEGGMTNLERQQILTEEQYLDALEEFG--- 173 LPS I +LD PL+++E ++Y F I T L + + E + + Sbjct: 123 RLPSYIANILDKPLKELENLVYCNFAFARPITKKPTLLRLRGLFKYETPPEPWHWYASIP 182 Query: 174 -----------DEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETK--------- 213 + GA AI+ L +DL E E E +E K Sbjct: 183 PFLSPQGWHTLRNRELSTGASAIREQLGDLDLRVIIESSLAEWKELEAEWKELEAEWKEL 242 Query: 214 ---------------------RKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPL 252 ++ L +R+ L + F+++ +PEWM+L++LPVLPP LRP Sbjct: 243 EEEGLPGDPWQERTIQKIERRKRFLVRRMGLAKHFIRTSVEPEWMVLSLLPVLPPGLRPA 302 Query: 253 VPLDGG---RFATSDLNDLYRRVINRNN-RLKRLLDLAAPDIIVRNEKRMLQEAVDALLD 308 SD+N LY RV++RN LK + P+ ++ +++ +LQEAVD LLD Sbjct: 303 AVHREELALSRRGSDINTLYGRVLSRNKEVLKFIRTPFTPEDVIMSQQILLQEAVDTLLD 362 Query: 309 NGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGL 368 NG RG+ I R KS +D+IKGK+GRFR+ LLGKRVDYSGRSVI VGP L LHQCGL Sbjct: 363 NGVRGQPIRDGQNRVYKSFSDVIKGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHQCGL 422 Query: 369 PKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPT 428 P+++A+ELF+PF+ L + LA I AAK + +E +VW+IL EVI+ HPVLLNRAPT Sbjct: 423 PREIAIELFQPFLIRSLIQQNLAPNIGAAKSQIREKERIVWEILREVIQGHPVLLNRAPT 482 Query: 429 LHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTN 488 LHRLGIQAF+P+L++G+AI LHPLVC +NADFDGDQMAVHVPL+LEAQ EAR LM S Sbjct: 483 LHRLGIQAFQPILVQGRAIYLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHM 542 Query: 489 NILSPANGEPIIVPSQDVVLGLYYMT---------------------------RDCVNAK 521 N+L+P+ G+PI VP+QD+++GLY +T + + K Sbjct: 543 NLLAPSIGDPICVPTQDMLIGLYILTSGNRRGLCVNRYNLWNHRKGQTERVGHKKARDRK 602 Query: 522 GEGMVLTGPKEAERLYRSGLASLHARVKVRIT 553 G+ + +A YR L + + +R Sbjct: 603 GKEPLFYNSYDAIGAYRQKRIRLDSPLWLRWR 634 >UniRef50_P23581 DNA-directed RNA polymerase subunit beta'' n=2 Tax=Euglena RepID=RPOC2_EUGGR Length = 830 Score = 530 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 236/844 (27%), Positives = 384/844 (45%), Gaps = 88/844 (10%) Query: 588 PYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIP 647 N+ K I +++ G T D++ GF YA +G S+G+ D+ IP Sbjct: 5 NIVCFNRVFDKNEIRNLISWFLSNYGSIRTKELLDKMKNFGFTYATTTGLSLGLGDLKIP 64 Query: 648 EKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVI 707 K ++ +E + + + ++++G++ ++ DIW N+ + K ++NL+ Sbjct: 65 SSKANLVKSSEKILFKTRNRYKNGMINFINVLDEERDIWNVVNENLKKESINNLRQSDF- 123 Query: 708 NRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGL 767 N +Y M SGARGS Q++QL GMRGLM+ G++I PI NF+EGL Sbjct: 124 -----------LNPLYSMTLSGARGSITQVKQLIGMRGLMSDSQGNVIPFPIKTNFKEGL 172 Query: 768 NVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIE 827 N+ +YF+S +GARKGL DTALKTAN+GYLTRR++ AQ+L+V DC T + + Sbjct: 173 NITEYFVSCYGARKGLIDTALKTANAGYLTRRMIYTAQNLIVKRSDCFTKYNTCVLLQNQ 232 Query: 828 GGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVS 887 + + L+++++GRV A+ ++ T DILV + + V +R+ + Sbjct: 233 DKEELKFLKEKLIGRVLAKTIVNAKTGDILVSAGQDICNYTFKKIINFP--EVYIRTPFN 290 Query: 888 CDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAE 947 C G+C CYG +LA G ++ GE +G++AAQSIGEPGTQLTMRTFH GG S A E Sbjct: 291 CVLMEGICQICYGWNLACGKMVELGECVGILAAQSIGEPGTQLTMRTFHTGGVFSAKAKE 350 Query: 948 SSIQVKNKGSIKL---SNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLA 1004 I G I + ++ V N + + + +I E +K +P +L Sbjct: 351 -VITSPLNGKIWYDLNTGLRRVYNKFKEKAFLTLQEKKIVIYENDVSKSIMFLPSSTLLY 409 Query: 1005 KGDGEQVAGGETVANWDPHT-----------MPVITEVSGFVRFTDMIDGQ--------- 1044 G ++ + + V ++SG + F + Q Sbjct: 410 VKPGRKIFDKQIIGESVNSNLKNDVFGIEEIRDVKAKISGQIFFPQINSKQFGKIFWIIS 469 Query: 1045 ----TITRQTDELTGLSSLV---------VLDSAERTAGGKDLRPA----LKIVDAQGND 1087 + T LT S V K+L P L I N Sbjct: 470 SIIMSFTSLFFHLTKKFSFKNKLICPTTNVHKKELFVNRKKELFPRKFGKLFINIRNVNS 529 Query: 1088 VLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTK---DITGGLPRVADL 1144 ++ + + I+ +D V + + + + L Sbjct: 530 LVDKSKVLKKRSSHIITCILD-QDKVIMLRNLKKQKRIFGNFKIGCFLKTGQIISNFKLL 588 Query: 1145 FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQ--------- 1195 ++ +E + ++ F R+ P + + R+ Sbjct: 589 HSSQIIQERKEFSIFRKVMPFSTNDDTLMRIEDKPFIRKNQLLYRVNFVREKTYDIVQGL 648 Query: 1196 LNVFEGERVERGDVISDGPEAPHDIL----------------RLRGVHAVTRYIVNEVQD 1239 V + + + PHDIL + + +Y+++ VQ Sbjct: 649 PKVEKLLEARMTSSLKEIINNPHDILTESFFTFLDDYENLVAARKSFEVIQKYLIDGVQT 708 Query: 1240 VYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVG 1299 VY+ QGVKI DKHIE+IV+Q+ K + N G S F+ G+ ++ + V++ N+ L + Sbjct: 709 VYKSQGVKIADKHIELIVKQITSKVIVTNPGDSSFMVGDFLDLNLVEVLNKRLVNS---- 764 Query: 1300 ATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPA 1359 Y ++G+T+ SL+++SFI+ ASFQETTRVLT+AA+ G+ D L GLKEN+++G +IPA Sbjct: 765 IVYEPIIMGLTRFSLSSQSFIAQASFQETTRVLTKAALQGRADWLSGLKENLVLGNIIPA 824 Query: 1360 GTGY 1363 GTG+ Sbjct: 825 GTGF 828 >UniRef50_P08968 DNA-directed RNA polymerase III subunit RPC1 n=8 Tax=Trypanosomatidae RepID=RPC1_TRYBB Length = 1530 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 204/931 (21%), Positives = 348/931 (37%), Gaps = 157/931 (16%) Query: 16 EFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKY 75 E A+ L S + + S L C R+ G VK+Y + Sbjct: 26 EISALHYGLLSRNDVHRLSV--------------------LPCRRVVGDVKEY-GVNDAR 64 Query: 76 KRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFL-------KSLPSRIGLLL 128 + R ICE CG + GHI+L +P H+ F +++ R +L Sbjct: 65 LGVCDRLSICETCG---LNSIECVGHPGHIDLEAPVFHLGFFTTVLRICRTICKRCSHVL 121 Query: 129 -----------------------DMPLRDIERVLYFESYVVIEGGMTNLERQ----QILT 161 M ++ I+ Y + GG+ + R+ +++ Sbjct: 122 LDDTEIDYYKRRLSSSSLEPLQRTMLIKTIQTDAYKTRVCLKCGGLNGVVRRVRPMRLVH 181 Query: 162 EEQYLDALEEFGDEFDAKMGAEA-IQALLKSMDLEQECEQLREELNETNSETKRKKLTKR 220 E+ +++ G + +A ++ + EC RE +++ + ++L Sbjct: 182 EKYHVEPRRGEGPRENPGGFFDAELRTACAYNKVVGEC---REFVHDFLDPVRVRQLFLA 238 Query: 221 IKLLEAFVQS---GNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNN 277 + E + G P +++T L V P +RP DL Y ++ + Sbjct: 239 VPPGEVILLGLAPGVSPTDLLMTTLLVPPVPVRPRGCAGTTTVRDDDLTAQYNDILVSTD 298 Query: 278 RLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGR 337 ++ D + MLQ LLD+ G LKS A +K K GR Sbjct: 299 TMQ---DGSLDATRYTETWEMLQMRAARLLDSSLPGFP-PNVRTSDLKSYAQRLKSKHGR 354 Query: 338 FRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAA 397 FR NL GKRVDYSGRSVI+ P L + + +P +A L P K + ++ Sbjct: 355 FRCNLSGKRVDYSGRSVISPDPNLDVDELAVPLHVARVLTYPQRVFKANHELMRRLVRNG 414 Query: 398 -----------------KKMVEREE--------AVVWDILD-EVIREHPVLLNRAPTLHR 431 KK ++ E V DI++ V+ VL NR P+LHR Sbjct: 415 PHVHPGATTVYLAQEGSKKSLKNERDRHRLAARLAVGDIVERHVMNGDLVLFNRQPSLHR 474 Query: 432 LGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNIL 491 + + A ++ + + + CA YNADFDGD+M VH T +A+ EA LM + NI+ Sbjct: 475 VSMMAHRARVLPFRTFRFNECCCAPYNADFDGDEMNVHFVQTEKARAEALQLMSTARNII 534 Query: 492 SPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKV 550 S NGEPII +QD + Y +T RD +GE + + G + Sbjct: 535 SAKNGEPIIACTQDFLAAAYLVTSRDVFFDRGEFSQMVS-------HWLGPVTQFRLPIP 587 Query: 551 RITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKG------------------LPYSIV 592 I + + G+ + + ++ + +L P L + Sbjct: 588 AILKPVELWTGKQLFELIVRPSPEVDVLLSFEAPTKFYTRKGKHDCAEEGYVAFLDSCFI 647 Query: 593 NQALGKKAIS-----KMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMV-- 645 + L KK + + + I G T +I Y G S+G+ D+ Sbjct: 648 SGRLDKKLLGGGAKDGLFARLHTIAGGGYTARVMSRIAQFTSRYLTNYGFSLGLGDVAPT 707 Query: 646 --IPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQT 703 + ++K +++ + + + ++G + + A N +SK Sbjct: 708 PELNKQKAAVLARSVEVCDGLIKSAKTGRMIPLPGLTVKQSLEARLNTELSKV------- 760 Query: 704 ETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIE------- 756 + + N+ +M SG++GSA I Q+ G I++ Sbjct: 761 RDECGTAAVQTLSIHNNTPLIMVQSGSKGSALNIAQMMACVGQQTVSGKRILDAFQDRSL 820 Query: 757 -------------TPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDV 803 + +F GL+ ++F T R+GL DTA+KTA +GY+ RRL+ Sbjct: 821 PHFHRFEEAPAARGFVANSFYSGLSPTEFFFHTMAGREGLVDTAVKTAETGYIYRRLMKA 880 Query: 804 AQDLVVTEDDCGTHEGIMMTPVIEGGDVKEP 834 ++L V D + + + G D +P Sbjct: 881 MENLSVRYDGTVRNTKGDVIQLRFGEDGLDP 911 Score = 77.1 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 60/142 (42%), Gaps = 42/142 (29%) Query: 1222 RLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVE 1281 R+ G+ A R IV+E+Q++ + + I+ +H+ ++ M ++ Sbjct: 1377 RVLGIEAARRVIVDEIQNILKAYSLSIDVRHVYLLADLMTQR------------------ 1418 Query: 1282 YSRVKIANRELEANGKVGATYSRDLLGITKASLATESF--ISAASFQETTRVLTEAAVAG 1339 +LGIT+ + +F ++ ASF+ TT L AA Sbjct: 1419 ----------------------GVVLGITRYGIQKMNFNVLTMASFERTTDHLYNAAATQ 1456 Query: 1340 KRDELRGLKENVIVGRLIPAGT 1361 + D + +++IVG+ +P GT Sbjct: 1457 RVDRDLSVSDSIIVGKPVPLGT 1478 Score = 73.2 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 5/57 (8%) Query: 895 CAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQ 951 CA Y R G G IAAQS+GEP TQ+T+RTFH G AS + + + Sbjct: 1130 CASKYLR-----KACEPGTPCGAIAAQSVGEPSTQMTLRTFHFAGVASMSITQGVPR 1181 >UniRef50_C6HPI8 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus H143 RepID=C6HPI8_AJECH Length = 1333 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 273/1476 (18%), Positives = 496/1476 (33%), Gaps = 282/1476 (19%) Query: 3 DLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIF 62 DL K + IK + S I S + EV + + + Sbjct: 10 DLGKAQVVDRVPKVIKEIKFGVLSTQDIVSQAVVEVSDRKLFDLDNDRAVA-------PH 62 Query: 63 GPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL-- 120 GP+ + + C+ CG + + HI L T FL+ L Sbjct: 63 GPLDGRM-------GISSKSGTCDTCGGALQEC-------SHI-LLPETERRAFLRELRR 107 Query: 121 -----PSRIGLLLDMPLR-DIERVLYFESYVVIEGGMTNLERQQILTEE----QYLDALE 170 R+ + + R R Y + V +I E+ +++ Sbjct: 108 PGIDNLRRMQIAKKINERCRKTRTCYKCNAVNGVVKKAGTSALKITHEKFRAFNASTSVK 167 Query: 171 EFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQS 230 + +A + D+++ ++ ++L+ + ++ L + Sbjct: 168 KIPPPSKVVFDKSFEEAKKSNPDIDKHFKKAHDDLHPLRVLRLFRSVSNEDCELLSLNPE 227 Query: 231 GNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDI 290 +PE + +P P +RP V DL +I N LK L AP Sbjct: 228 EARPEVFLWQYVPAPPVCIRPSVG-QEAASTEDDLTAKLGDIIQSNINLKNALIKGAPVQ 286 Query: 291 IVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYS 350 + +Q + +++ G K P++ +KGKQGRFR NL GKRVD+S Sbjct: 287 TIIECWDYMQLQLAVYINSDVPGLQKADFGK-PIRGFCQRLKGKQGRFRGNLSGKRVDFS 345 Query: 351 GRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKK----------- 399 GR+VI+ P LR+++ +P+ +A+ + P + L I+ K Sbjct: 346 GRTVISPDPNLRVNEVAVPQLVAMNMTYPEQVTRYNKEKLRQRIRNGTKTWPGANYVLKK 405 Query: 400 -------------MVEREEAVVWDILDEVIR-EHPVLLNRAPTLHRLGIQAFEPVLIEGK 445 + E DI++ I VL NR P+LH+L I + + + Sbjct: 406 SQNFKMNLKFGNPNLVANELEEGDIVERHIEDGDIVLFNRQPSLHKLSILSHFAKVRPHR 465 Query: 446 AIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQD 505 +L+ VC YNADFDGD+M +HVP T EA+ EA LM NN+ +P NGEPII QD Sbjct: 466 TFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGEPIISAIQD 525 Query: 506 VVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVA 565 + Y ++ V + LY +L + + + G+ V Sbjct: 526 FITAAYLLSSKDVFYDRKTFT------HICLYMLESDTLFDLPPPSVLKPQILWTGKQVF 579 Query: 566 KTSLKDTTVGRAILWM-------IVPKGLPY--------------SIVNQALGKKAIS-- 602 ++ ++ + PKG P I+ + K I Sbjct: 580 NVLMRPNKQSPVLINLDAACREFKAPKGTPRDLDANDGWLCIRNSEIMCGVMDKSTIGSG 639 Query: 603 ---KMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDM----VIPEKKHEIIS 655 + R G +++ + G S+GI D+ + E+KH I+ Sbjct: 640 KKDSVFYVMLRDFGPDVASEGMNRLSRLSARWLTNLGFSIGITDVYPGEKLLEEKHHIVE 699 Query: 656 EAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEK 715 A A+ E+ + F++G + ++ + + A + +SK + + Sbjct: 700 HAYAQCDEVIQLFKNGKLEKAPGCDEQMTMENAISGLLSKVRQQ--------AGEICIAE 751 Query: 716 QVSFNSIYMMADSG---------------ARGSAAQIRQLAGMRGLMAKPDGSIIETPIT 760 +NS +MA SG R S++ I Q ++ Sbjct: 752 LSRWNSPLIMATSGLMKSLEDLSTRYDDTVRNSSSNIVQF-----QYGDDKLDPVD---- 802 Query: 761 ANFREG-LNVLQY---FISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGT 816 EG + + F T ++ G L ++ + Q+L+ E Sbjct: 803 ---MEGRAKPVHFDRTFTHAEV-------TTFDNSDKGLLPDEIITLCQNLLAPERAKLA 852 Query: 817 HEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENS 876 ++ + + +A D L+ + L Sbjct: 853 RFDLLGKKLEYNDRSDHGIDQL----ESARDFLQSIEDYVCAKAEKLRSIDSGTKQRGKG 908 Query: 877 VDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFH 936 V S + + C Y R + G A+G + AQSIGEPGTQ+T++TFH Sbjct: 909 VIHTAKVSTRALTSFITACLTKYKR-----AQVEPGHAVGAVGAQSIGEPGTQMTLKTFH 963 Query: 937 IGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYK 996 G A + + + +K ++N+S ++ EL + + + Sbjct: 964 FAGVAGMSITQG-----------VPRIKEIINASKEISTPVITCELV----NKQDLRAAQ 1008 Query: 997 VPYGAV--LAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDM-IDGQTITRQTDEL 1053 + G V D + + +G + ++ ID TI EL Sbjct: 1009 IVKGRVEKTFVRD---------------IIYYIEEDWTGNEAYINIKIDFSTIQNLQLEL 1053 Query: 1054 TGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGV 1113 T L+ + +R D+ + F + + + Sbjct: 1054 TLQDILMAIKKHKRFKSA----------------------DLKFRSF---GSHIHIFVDQ 1088 Query: 1114 QISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKR 1173 Q T++ G L + K ++ G Sbjct: 1089 Q--------TTRTALSKTEEAATGADPYIRL---KHLKRLIPNIQVIGH-------PQCA 1130 Query: 1174 RLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYI 1233 R +I + + ++ + + + + ++ + + G+ A I Sbjct: 1131 RAIIRTDETNTTNTLLVEGYGLRDCMTTDGINGHHTRTN---NIMETRAVLGIEAARTTI 1187 Query: 1234 VNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELE 1293 V E+ +V + + I+ +H++++ M K + Sbjct: 1188 VEEIGEVMKD--MAIDPRHMQLLADVMTYKGEV--------------------------- 1218 Query: 1294 ANGKVGATYSRDLLGITKASLAT--ESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 LGIT+ LA +S + ASF++T L +A AG+ D + G+ E + Sbjct: 1219 -------------LGITRFGLAKMRDSVLQLASFEKTADHLFDAGGAGRTDLIEGVSECI 1265 Query: 1352 IVGRLIPAGTG-------YAYHQDRMRRRAAGEAPA 1380 IVG+ + GTG +++ ++ RR A Sbjct: 1266 IVGKSVSLGTGAMEVVRALNFYEGQIGRRKTTFEDA 1301 >UniRef50_A7J587 DNA-directed RNA polymerase (Fragment) n=10 Tax=Leotiomyceta RepID=A7J587_9LECA Length = 1002 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 177/870 (20%), Positives = 308/870 (35%), Gaps = 164/870 (18%) Query: 110 PTAHIWF-------LKSLPSRIGLLL-DMPLRDIERVLYFESYVVIEGGMTNLERQQILT 161 P H+ L+++ G +L D L F + L + +++ Sbjct: 1 PVFHVGLMTKIKKLLETVCHNCGKILVDESNPAFADALRFRDPKRRFDAIWRLCKPKLVC 60 Query: 162 EE---QYLDALEEFGDEFDAKMGAEAIQA--LLKSMDLEQECEQLR-EELNETNSETKR- 214 E D +++ + G +Q + M L + + +E NE K+ Sbjct: 61 ETAAVTEDDNMDKTKEPKHDHGGCGNVQPEVRREGMKLNGTWKPQKGDEENEGQQPEKKP 120 Query: 215 ------KKLTKRIKLLE----AFVQSGNKPEWMILTV-----------LPVLPPDLRPLV 253 + + I E +PEWMI+TV + V Sbjct: 121 ITPQMALNIFRHISNDEIRKMGLSSDYARPEWMIITVLPVPPPPVRPSI---------SV 171 Query: 254 PLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRG 313 G DL +I + ++ +P +V + +++LQ V +DN G Sbjct: 172 DGGNGMRGEDDLTYKLGDIIRASGNVRTCEAEGSPAHVVADFEQLLQFHVATYMDNDIAG 231 Query: 314 RA-ITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKM 372 + + RP+KS+ +KGK+GR R NL+GKRVD+S R+VIT P L L + G+P+ + Sbjct: 232 QPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSI 291 Query: 373 ALELFKPFIYGKLELRGLATTIK------AAKKMVEREEAVV-----------------W 409 A L P ++ L +K K V R+ W Sbjct: 292 ARTLTYPETVTPYNIQKLHQLVKNGPNDHPGAKYVIRDTGERIDLRHHKRAGEISLQYGW 351 Query: 410 DILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVH 469 + +I + NR H+ + ++ +L+ V + YNADFDGD+M +H Sbjct: 352 KVERHIIDGDYIXFNRHHAXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLH 411 Query: 470 VPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTG 529 VP + E + E L M NI+SP P++ QD + G+Y + R V E + Sbjct: 412 VPQSEETRAEINQLCMVPLNIVSPQRNGPLMGTVQDTLCGIYKICRRDVFLNKEQV---- 467 Query: 530 PKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLK--DTTVGRAILWMIVPKG- 586 + I + D +G L LK G+ I+ +++P G Sbjct: 468 --------------------MNILLWVPDWDGVLPQPAILKPRPKWTGKQIISLVIPPGL 507 Query: 587 ------------------------LPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFAD 622 L Y + N+ +++ + G + + F + Sbjct: 508 NLTRSSSEGFSPLNDDGLFVSGGELMYGLFNKKSVGATSGGIIHIIFNEKGPEAAMNFFN 567 Query: 623 QIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEA----EAEVAEIQEQFQSGLVTAGER 678 + +G S+GI D + + I A + +VAEI + Sbjct: 568 GAQTVVNYWLLHNGFSIGIGDTIPDRNTIQRIENAVNQQKEDVAEITRSATENDLEPLPG 627 Query: 679 YNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIR 738 N + + L EE N+ MA SG++GS I Sbjct: 628 MN--------VRETFESKVSKALNKARDDAGTVTEEGLKDLNNATQMARSGSKGSTINIS 679 Query: 739 QLAGMRGLMAKPDGSI--------------------IETPITANFREGLNVLQYFISTHG 778 Q+ + G + I + ++ GL ++F Sbjct: 680 QMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMA 739 Query: 779 ARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDR 838 R+GL DTA+KTA +GY+ RRLV +D++ D + + + G D + + Sbjct: 740 GREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDGVH-- 797 Query: 839 VLGRVTAEDVLKPGTADILVPRNTLLHEQW 868 ++P DI+ + +++ Sbjct: 798 ----------IEPQRVDIITCSDQQFEKKF 817 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%) Query: 883 RSVVSCDTDFGVCAHCYGR--DLARGHIINKGEAIGVIAAQSIGEPGTQLT 931 R V+ C + H G +N GE +GV+AAQSIGEP TQ+T Sbjct: 952 RLVMECSLNKLAFQHVLGEIESRFCRAAVNPGEMVGVLAAQSIGEPATQMT 1002 >UniRef50_Q86H36 DNA-directed RNA polymerase I subunit rpa1 n=1 Tax=Dictyostelium discoideum RepID=RPA1_DICDI Length = 1615 Score = 516 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 226/1313 (17%), Positives = 455/1313 (34%), Gaps = 221/1313 (16%) Query: 235 EWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAA-PDIIVR 293 + + + V PV P RP ++G R + N Y+ ++ N +++ +D + Sbjct: 334 DSLFMRVFPVTPARYRPPNFVNG-RRSEHPQNSHYKGMVKSNKMIRQSIDAGEGKAKFLV 392 Query: 294 NEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRS 353 N LQ V+ + DN + + + +++ K+G FR++++GKRV+Y+ R+ Sbjct: 393 NSVCDLQMHVNNMYDNSKS----NSNTNEVANGIKQILEKKEGLFRKHMMGKRVNYAART 448 Query: 354 VITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI------KAAKKMVEREEA- 406 VI+ L ++ G+P+ A L P LA + +E E Sbjct: 449 VISPDISLETNEMGVPQYFAKTLTFPQPVTSFNYNQLAQAVINGPEQYPGANFIEDENGH 508 Query: 407 -----------------------------VVWDILDEVIREHPVLLNRAPTLHRLGIQAF 437 V + ++ VL NR PTLH+ GI Sbjct: 509 LINLSKESQEKRIALSKTLLTSHPHAPRGVNKKVYRHLLSGDYVLANRQPTLHKPGIMGH 568 Query: 438 EPVLI--EGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPAN 495 ++ K +++H C+ YNADFDGD+M +H P +L A E R + + L P N Sbjct: 569 RVKVLGKNEKTLRMHYSNCSTYNADFDGDEMNIHFPQSLLASAEIREICANNYQYLVPRN 628 Query: 496 GEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITE 554 G P+ QD +L +T RD + K + + + I + Sbjct: 629 GAPLRGLIQDHILTGVLLTKRDTLFTKADFQAILYAS----CWSVNTKHPIVTPPPCILK 684 Query: 555 YEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSI----------------------- 591 +G+ + +L T+GRA L + P +P + Sbjct: 685 PVPLWSGKQLISAALNQLTIGRAPLNLEAPSKIPTKMWGTKGLEITRDSHVIIRQNEMVA 744 Query: 592 --VNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEK 649 +++ + +++TCY + + Y G + G+DD+++ K Sbjct: 745 GILDKGHFGASSYGLVHTCYELYDPDVAGSLLTLLGRMFTNYLQSRGFTCGVDDLLMKNK 804 Query: 650 ----KHEIISEAEAEVAEIQEQF----QSGLVTAGERYNKVIDIWAAA---NDRVSKAMM 698 + E + +A E + +F + A + ++K + + + K + Sbjct: 805 EEKFRVETLKKANEEGYTVAAKFADLSKYDEQKARDFFSKALQSEREVARLDGLLKKGLN 864 Query: 699 DNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM----------- 747 G ++K N+ +M SGA+GS Q++ + G Sbjct: 865 QYTSKVIDTLIPGGQQKPFPKNNFSLMTVSGAKGSVVNFSQVSCLLGQQELEGKRVPRMV 924 Query: 748 ---AKPDGSIIE------TPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTR 798 P + + F G+ YF R+GL DTA+KT+ SGYL R Sbjct: 925 SGKTLPSFQAYDASARAGGFVMDRFLTGVRPQDYFFHCMAGREGLIDTAVKTSRSGYLQR 984 Query: 799 RLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTA------------- 845 L+ + L V D+ + G D E + L + Sbjct: 985 CLIKHLEGLSVQYDNTVRESDGSVIQFNYGEDSLEIGKTPYLTKFPIIAENYELFKSQFP 1044 Query: 846 -EDVLKPGTADILVPRNTLL----------------------HEQWCDLLEENSVDAVKV 882 E +++ +V N + E + + L + +++ Sbjct: 1045 MEQLIEQLKNQEVVEYNRSIKTQPELDPVMSKFNPSSDLGCVSESFMNQL-NHYIESNPQ 1103 Query: 883 RSVVSCDTDFGVCAHCYGRDL----ARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIG 938 + + + G R+L +++ GE++G++ AQSIGEP TQ+T+ TFH+ Sbjct: 1104 KLIKTTSNRDGKINEKDFRNLMYLYYSRSMVSPGESVGLLCAQSIGEPSTQMTLNTFHLA 1163 Query: 939 GAASRAAAESSIQVKN-----KGSIKLSNVKSVVNSSGKLVITSRNTE------------ 981 G +++ ++ +N S V T + + Sbjct: 1164 GRGEANVTLGIPRLRELIMTATTKPITPLMEFQINDSTNKVETEKMAKYLEILKLSDIIK 1223 Query: 982 -LKLIDEFGRTKESYKVPYG---------AVLAKGDGEQVAGGETVANWDPHTMPVIT-- 1029 + + + F T +Y + ++ + + + ++ + Sbjct: 1224 DITVQEYFQDTNRNYDIEIEFIPTLQQVLSLHRIKEKQL---NKLFGEFNKVIKRQVKSQ 1280 Query: 1030 ----------EVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLD--SAERTAGGKDLRPA 1077 + VR +D+++ ++T D+ D ++++ ++ + Sbjct: 1281 GKLKVNNGDIGLGSKVRGSDLVEDDSLTINDDDAPANDDTTNNDENTSQQQPSSQNKKSK 1340 Query: 1078 LKIVDAQGNDVLIPGTDMPAQ---YFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDI 1134 K++ + V + Q Y + + + S + + +I Sbjct: 1341 SKVITQDDDSVAAKSKNKKKQNVNYEDGEEEAEEKDSDEGESEAEESDDKSDVDSDSDEI 1400 Query: 1135 TGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWR 1194 + + E+ + +++ +S ++K L I + S + Sbjct: 1401 SNSRSSNSFSDESIEFDQK----KLTFTISVASDSKKVLMLGIVETEASKFVLKSCKGIT 1456 Query: 1195 QLNVFEGER--VERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKH 1252 + V E + + S+G +I LR + N++ + + GV+ Sbjct: 1457 RCFVNEKQVGGKTHYSIQSEG-VNLSEIFELRDKLKIDEIYTNDIYAILQKYGVEA---- 1511 Query: 1253 IEVIVRQ-MLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITK 1311 RQ + + + V A G V+ + + + G A +GI Sbjct: 1512 ----CRQAVTSEISNVFAA-----YGISVDKRHLILLGDYMTFEGGYRALNR---IGIE- 1558 Query: 1312 ASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 S SF+ T L++A++ G D + +++G+++ GTG Sbjct: 1559 ---NNTSPFQKMSFETTFSFLSKASLMGDYDTVTSPSSRIVLGQIVKNGTGSF 1608 Score = 58.6 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 41/132 (31%), Gaps = 23/132 (17%) Query: 5 LKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGP 64 + ++ EE ++ + D +R S ++ + E+ + P GL + GP Sbjct: 1 MSMSQSALIKEEISSVSFQFYTSDDVRKLSVKQIVEIESFDMLGG-PVPGGLHDPAL-GP 58 Query: 65 VKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRI 124 E C C ++ + GHIELA P + I Sbjct: 59 TGPAE--------------RCATCSLDFIECP---GHFGHIELAIPCYNP----VSFQTI 97 Query: 125 GLLLDMPLRDIE 136 LL Sbjct: 98 FKLLKNKCFHCH 109 >UniRef50_Q6C1S4 DNA-directed RNA polymerase n=2 Tax=Saccharomycetales RepID=Q6C1S4_YARLI Length = 1628 Score = 511 bits (1317), Expect = e-143, Method: Composition-based stats. Identities = 243/1216 (19%), Positives = 432/1216 (35%), Gaps = 269/1216 (22%) Query: 16 EFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKY 75 E + L SP+ I S ++ P T + P GL+ ++ +++ C Sbjct: 12 EITRVDFGLYSPEEILQLSVTQITNPTTFD-ALGNPISGGLYDPKLGAFLRNNCATCNLD 70 Query: 76 KRLKHR------------------------GVICEKCG--------VEVTQTKVRRERMG 103 R C CG V K+R + G Sbjct: 71 NRFCQGHPGHIELPMPVYNPLFFTQLWVLLRAACRFCGHFRTSKAEVHKIYCKLRLLQYG 130 Query: 104 HIELASPTAHIW-FLK----------SLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMT 152 + A+ +I F+K + S ++D + E+ + ++ G+T Sbjct: 131 LVGAAAEIDNIKSFMKESDDDVVQDDASASVDAAVMDRQSKFTEKTIAEA----LKEGVT 186 Query: 153 NLERQQILTE-EQYLDALEEFGDEFDAK-------MGAEAIQALLKSMDLEQECEQLREE 204 + Q T E+ + +F AK M + A + S E + +E+ Sbjct: 187 TPQGVQTATVLEERKFVIRDFYKLLVAKSQCAQCGMHSPAYRKDGISKIFEMPLSENKEK 246 Query: 205 LNETNSETKRKKLTKRIKLLEAF---------------------------------VQSG 231 +N++ R + R + + V Sbjct: 247 VNQSKGLRARNMIRDRSDPINEYPLPKAGANGRYLLSSEVRNILVTLFEHEQQLMSVLFR 306 Query: 232 NKP---------EWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLK-- 280 N+P + L + V R L G S N L +V++ +++ Sbjct: 307 NRPNFDSQSISGDMFFLKNIVVPATRFR-LPAARGEEVVESTTNTLLVKVLSTGMKIRDL 365 Query: 281 -------RLLDLAAPDIIV-----RNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLA 328 RL + P+ V N LQ V+ +D+ + + + P+ + Sbjct: 366 NGTIAKMRLEKIGLPERKVTFAALMNAFVELQNDVNGFIDSTKGNQ---KTGSVPVPGIK 422 Query: 329 DMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELR 388 ++ K+G FR+N++GKRV+Y+ RSVI+ P + ++ G+P A++L P + Sbjct: 423 QTLEKKEGLFRKNMMGKRVNYAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTPYNVA 482 Query: 389 GLATTIKAAK--------------KMV-------EREEAVVWDIL--------------- 412 L+ + KM+ E+ A +L Sbjct: 483 ELSRAVINGPDVWPGAIQIQTEDGKMISLEGMTLEQRTATANQLLTPSANASGFTNKKVF 542 Query: 413 DEVIREHPVLLNRAPTLHRLGIQAFEPVLIE-GKAIQLHPLVCAAYNADFDGDQMAVHVP 471 + VL+NR PTLH+ + ++ K ++LH AYNADFDGD+M +H P Sbjct: 543 RHIRNNDVVLMNRQPTLHKASMMGHRVRVLPKEKTLRLHYANTGAYNADFDGDEMNMHFP 602 Query: 472 LTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVL-TG 529 A+ EA L + + L+P +G+P+ QD + +T +D + E L G Sbjct: 603 QNENARAEALLLANTDSQYLTPTSGKPLRGLIQDHISAGVLLTSKDTFFTRQEYQQLIYG 662 Query: 530 PKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKD-TTVGRAILW-------- 580 E + + + +H V + + G+ V T LK+ T +GR L Sbjct: 663 CLRPEDGHTADVGRIHT-VPPAVIKPVPLWTGKQVITTVLKNITPIGRPGLNLNAKNKVK 721 Query: 581 ------------MIVPKG-LPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYT 627 +I G L I++++ A ++++ + I G + Sbjct: 722 NEYWGEGSTENSVIFQNGELVCGILDKSQYGAADYGLVHSIHEIYGAHIAGKLLSVLGRL 781 Query: 628 GFAYAARSGASVGIDDMVIPEK-----------KHEIISEAEAEVAEIQEQFQSGLVTAG 676 Y G + G+DD+ + + ++ +A AEV + E Sbjct: 782 FTRYVMNIGLTCGMDDLWLTAEGNNWRTTTLEGAKDVGVKAAAEVTNLPEDTDPEDPELL 841 Query: 677 ERYNKVIDIWAA--ANDRVSKAMMDNLQTETVIN-RDGQEEKQVSFNSIYMMADSGARGS 733 +R +++ D +S++ ++ + T V K+ N++ MA SGA+GS Sbjct: 842 KRLEEILRDDNKLGILDAISQSKVNAVTTSVVSQCIPNGTMKRFPQNAMQRMALSGAKGS 901 Query: 734 AAQIRQLAGMRGLMAK--------------PDGSIIET------PITANFREGLNVLQYF 773 + Q+ G A P ET + + F G+ +Y+ Sbjct: 902 NVNVSQIMCGLGQQALEGRRVPVMVSGKTLPAFKPFETDAIAGGFVASRFFSGIRPQEYY 961 Query: 774 ISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKE 833 R+GL DTA+KT+ SGYL R L+ + + T D+ + + GGD + Sbjct: 962 FHCMAGREGLIDTAVKTSRSGYLQRCLIKQLEGVHSTYDNTVRDSDGALIQFMYGGDSVD 1021 Query: 834 PLRDRVL--------------------GRVTAED-------------VLKPGTADILVPR 860 +++ L G V D K T+D +P Sbjct: 1022 VIKESHLQQFDFCVENFQAMVHKHQPGGNVDNLDTDTAIEYAKKAKKKAKKATSDAELPE 1081 Query: 861 NTL-----------LHEQWCDLLEENSVDAVKVRSV-----VSCDTDFGVCAHCYGRDLA 904 T+ + E++ + LE V S D GV + R L Sbjct: 1082 PTISLYNPAKYLGSVSEEFSNSLEAYIASRPDVFPPKKSGKKSTYADQGVTEKKF-RSLM 1140 Query: 905 RGH----IINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL 960 + +N GEA+G+IA+QSIGEP TQ+T+ TFH G + +++ I + Sbjct: 1141 QLKYMQSTVNPGEALGIIASQSIGEPSTQMTLNTFHFAGHGAANVTLGIPRMR---EIIM 1197 Query: 961 SNVKSVVNSSGKLVIT 976 + KS++ L + Sbjct: 1198 TASKSIMTPQMSLPVL 1213 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 43/180 (23%), Positives = 71/180 (39%), Gaps = 45/180 (25%) Query: 1191 PKWRQL---NVFEGERVERGDVISDGPEAPHDI---LRLRGVHAVTRYIVNEVQDVYRLQ 1244 PK R+L V E E+G+ I +DI L+ GV A +V E+ +V++ Sbjct: 1476 PKDRKLTTEGVNFREMWEQGEFIDVNAIYSNDIYAVLKTYGVEAARNTMVQEINNVFKTY 1535 Query: 1245 GVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSR 1304 + +N +H+E+I M R EG + ++R Sbjct: 1536 AITVNLRHLELIADMMTR-------------EGTYLAFNR-------------------- 1562 Query: 1305 DLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 +G+ + S S++ T LT+A + G D L +++GRL GTG Sbjct: 1563 --MGVD----SNTSPFLKMSYETTCGFLTKAVLDGGCDALESPSARIVIGRLSGVGTGSF 1616 >UniRef50_Q22M85 DNA-directed RNA polymerase n=1 Tax=Tetrahymena thermophila SB210 RepID=Q22M85_TETTH Length = 1418 Score = 511 bits (1316), Expect = e-143, Method: Composition-based stats. Identities = 269/1462 (18%), Positives = 509/1462 (34%), Gaps = 210/1462 (14%) Query: 33 WSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKY---KRLKHRGVICEKCG 89 S + +P N T P G R+ +++ C + IC+ CG Sbjct: 1 MSEVCLDEPSFYNQTTRAPLNRGPLDLRMGPSMRENNLKCQTCFFGDVINILQCICKSCG 60 Query: 90 VEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEG 149 + ++ M R+ +D + LY + + Sbjct: 61 KVLLDEDEKKNSM-------------------KRMQKAIDDKNYQLRADLYVKMRKECKK 101 Query: 150 GMTNLERQ------------QILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQE 197 G R ++ T + D + D D + + Q L+ + + Sbjct: 102 GANQKCRSCGYKNGPLKKMPKMPTTISFSDQTKLEQDFRDIRESEDIFQENLRKILESKN 161 Query: 198 CEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDG 257 +++ E LN + +K+T LL F N P +ILT + P +RP V Sbjct: 162 MKEMIEILNPLETYKIFRKITCDEILL--FNIQQNHPCDLILTHIIAPPACIRPTVKEGE 219 Query: 258 GRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAIT 317 DL R ++RN R+ ++++ I + E +LQ + L+ Sbjct: 220 SNVRHDDLTVKIRDFLDRNKRIAQMIEDGEDLIKINQEWFLLQCSHAHYLNAETPNLPFK 279 Query: 318 GS---NKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMAL 374 K+ +++LA +KGK+GRFR NL GKR +++GR+VI+ P + + +P+ MA Sbjct: 280 MDKDFGKKDIRALAQRLKGKKGRFRGNLSGKRSNFTGRTVISPDPNIPIDNVVVPEYMAK 339 Query: 375 ELFKPFIYGKLELRGLATTIKAA------------------------KKMVEREEAVVWD 410 L P + + L + + + +E + D Sbjct: 340 ILTFPEQVNAINIERLKKLVINGPEKYPGAHYIIAKDTEDKFNLSIDNRRKKADELKIGD 399 Query: 411 ILDEVIREH-PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVH 469 I++ I+ +L NR P+LHR+ I AF+ + + I+ + CA +NADFDGD+M +H Sbjct: 400 IVERHIQNGEILLFNRQPSLHRISIMAFKANIQKWNTIRFNECCCAPFNADFDGDEMNIH 459 Query: 470 VPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTG 529 VP T+EA+ EA+ L+ N++SP NGE D + Y +T + Sbjct: 460 VPQTIEARAEAQYLLDVKQNLISPKNGE-------DFLTTAYLITHKDMFFDRAAFCQCC 512 Query: 530 PKEAERLYRSGLASLHARVKVRITEY------------EKDANGELVAKTSLKDTTVGRA 577 ++ + R L + V + Y ++ G+ + L+ Sbjct: 513 TYFSDGIERIDLPPPAIILPVGMKYYLLNIFQSQIYQQKEMWTGKQIIDVILRPNRFSNI 572 Query: 578 ILWMIVPKG--------------------LPYSIVNQALGKKAISK-----MLNTCYRIL 612 I+ +I+ + ++ LGK + + R Sbjct: 573 IVNLILKEKCYDTKQDRGVMCPTDGYVVFQSSELMCGNLGKTTLGSGNKNGLFYRLSRDN 632 Query: 613 GLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGL 672 + + G ++GI D+ ++I + + E + + FQS L Sbjct: 633 SQYMAASVMSRFAKLSARWITNYGMTIGISDVTPSPSLNKINEKKKDEAIDSCK-FQS-L 690 Query: 673 VTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARG 732 + + + V + L ++ N +MA G++G Sbjct: 691 IFTNSIGKLDMQTVSDRKKLVEAEISKTLNQVREDIGSNCNKQLPPTNGPLIMATCGSKG 750 Query: 733 SAAQIRQLAGMRGLM-----AKPDGSIIET-----------------PITANFREGLNVL 770 SA + Q+ G G P+G T + +F GL+ Sbjct: 751 SATNLSQMIGCVGQQIIGGRRVPNGFTGRTLPHFEKDEIFPHPEAMGFVRNSFFTGLSAP 810 Query: 771 QYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEG-IMMTPVIEGG 829 ++F T R+ L DTA+KTA++G RLV + +DL V D + GG Sbjct: 811 EFFFHTMAGRESLVDTAVKTADTG----RLVKMLEDLSVNYDLTIRTCDKKELVQFRYGG 866 Query: 830 DVKEPL--RDRVLGRVTAEDV-----LKPGTADILVPRNTLLHEQWCDLLEENSVDAVKV 882 D P ++V + D+ A I R L+ + + K+ Sbjct: 867 DGICPWMSEEKVTDKSIPIDLETMLKYVKSIAPINYKREQSLYPYQIYQICLEELKRTKM 926 Query: 883 RSVVSCDTDFGVCAHCYGRDLARGHI-INKGEAIGVIAAQSIGEPGTQLTMRTFHIG-GA 940 + + + Y R+ + +I Q + EP + F Sbjct: 927 DYIPE-LSLEPMQNSSYNREFDQDYIQQQLNSTDNKFDVQLVKEP-----LEYFKDSVSL 980 Query: 941 ASRAAAESSIQVK-----NKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESY 995 + + ++V+ G I+ + + ++ + IT R + F E Y Sbjct: 981 FIKQICQKIMKVRTQLGLTPGDIESPDNATSIHVDNTIHITKRQ----INYFFKTLWERY 1036 Query: 996 KVPYGAVLAKGDGEQVAG-GETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELT 1054 + GE V G T + M + + V ++ G ++ + Sbjct: 1037 P-----QMLVEPGEAVGAVGATSISEPATQMTLKSFHFAGVASMNITQGVPRMKEIIDAA 1091 Query: 1055 GLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQ 1114 S ++D + I L ++ + + P + +E + Sbjct: 1092 KKISTPIIDVKLLPQFQSE-HSYRSIRLQIEKTYLGEISNFYQEVYSPKDCHLYIEYNKK 1150 Query: 1115 ISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVS-FGKETKGKR 1173 L + I G+ + A+ KE I+A + G + Sbjct: 1151 KLEQFRLYGLEIPLSS---IKKGILEI-----AKDIKEDQIIAVKDQDLKPVGIKINPGN 1202 Query: 1174 RLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDI-LRLRGVHAVT-- 1230 + +++++P + + +RV G + + L + G Sbjct: 1203 DVKKNVFFKIQNWKKILPGAVVSGMKDVKRVSISKDKKKGDKNEYKFDLFVEGNSFKQVL 1262 Query: 1231 --------RYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEY 1282 + ++ +V ++ GV+ K I+ ++ + S V+ Sbjct: 1263 QLDEVDFANTLSVDIFEVLQILGVEAARK---TIINEITKTIK-----SHSL----NVDR 1310 Query: 1283 SRVKIANRELEANGKVGATYSRDLLGITKASLAT--ESFISAASFQETTRVLTEAAVAGK 1340 + + L + G+ L G T+ + + +S + ASF++TT +L AA+ G+ Sbjct: 1311 RHLILVADVLTSKGR--------LHGSTRQGINSMKDSTLMLASFEKTTEILYNAALQGR 1362 Query: 1341 RDELRGLKENVIVGRLIPAGTG 1362 +D L G+ E +I+G+ IP GTG Sbjct: 1363 KDTLEGVSERIIIGQNIPMGTG 1384 >UniRef50_Q9BHM2 DNA-directed RNA polymerase (Fragment) n=6 Tax=Pleistophoridae RepID=Q9BHM2_9MICR Length = 1117 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 181/912 (19%), Positives = 329/912 (36%), Gaps = 175/912 (19%) Query: 103 GHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVV---------------- 146 GH+EL P H+ ++ ++I LL++ R+ F+ + + Sbjct: 1 GHMELTRPVFHVGYM----NKIKKLLEIVCFYCSRIKSFDMFKIVGVNVNGVNDVNDVGG 56 Query: 147 --------------------------IEGGMTNLERQQILTEEQYLDALEEFGDEFDAKM 180 + ++ ++ L+ + Sbjct: 57 VNGVNVSGVNDVNDAVDKNDKNNAVDKNNAVDVNDKNTATRTKKGLNFFWNLCKGKTMCI 116 Query: 181 GAEAIQALLKSMDLEQECEQLREE-------LNETNSETKRKKLTKRIKLLEAFVQSGNK 233 ++ Q L+K L E+ LN T K++ + L+ F ++ Sbjct: 117 HCQSKQPLIKRDGLSLIAFIKGEDNSEGKVILNCEKVHTIFKRICEDECLVLGFDGRFSR 176 Query: 234 PEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVR 293 PEWM+++VL V PP +RP V L+G DL ++ N L + AP I+R Sbjct: 177 PEWMVISVLNVSPPAVRPSVVLEGMLRGEDDLTHKLADIVKANTNLAKYEREGAPGHIIR 236 Query: 294 NEKRMLQEAVDALLDNGRRGRAIT-GSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGR 352 + + +LQ V L+DN G + + RPLKS++ +KGK+GR R NL+GKRVD+S R Sbjct: 237 DYESLLQYHVATLMDNNIAGLPQSLQKSGRPLKSISARLKGKEGRVRGNLMGKRVDFSAR 296 Query: 353 SVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI------KAAKKMVEREEA 406 SVI+ + L + G+P+ +A P L + V RE+ Sbjct: 297 SVISPDSNISLVEVGVPEAIAKIHTFPERVTGFNKERLERMVRNGPNRWPGANFVTREDE 356 Query: 407 VVWD---------------ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHP 451 + + VL NR PTLH++ + A +++GK +L+ Sbjct: 357 QKIGLRFNRNSVLLTEGCVVERHMADNDIVLFNRQPTLHKMSMMAHRARIMKGKTFRLNL 416 Query: 452 LVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLY 511 V YNADFDGD+M +++P + + E L + N++S +P++ QD ++G+ Sbjct: 417 SVTTPYNADFDGDEMNLNMPQSFNTRAELENLCIVAKNVVSCQGNKPVMGIVQDSLVGVR 476 Query: 512 YMT-RDCVNAKGEGMVL-----------------------------------------TG 529 MT +D + E M L Sbjct: 477 KMTGQDVFIERYEAMHLIFRISGNTCNTSMSTCSMGTCSMGRGGMGSMGMSGSTCMGGNT 536 Query: 530 PKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPY 589 + + VR K + A + G + ++P+ Sbjct: 537 SNTPTTRTTRTTTNATNDLSVRSGRSGKRGDSFRPAILRPRKIYTGAQMFSFVLPRITYR 596 Query: 590 SI---------VNQALGKKAISKMLNTCYRILGLK--PTVIFADQIMYTGFAYAARSGAS 638 + + KK + + +L L+ V F D + ++ + G + Sbjct: 597 RDAVLIKHGILIKGRIDKKIVGTSQGSLVHVLVLEGLDVVAFFDNLQRVVCSFLLQVGFT 656 Query: 639 VGIDDMVIPEKKHEI----ISEAEAEVAEIQEQFQSGLVT-------AGERYNKVIDIWA 687 +GI D V E ++ I E++ EV + + G + ++ Sbjct: 657 MGIGDTVADEATMKMVVRSIKESKEEVNRLIRVAREGRLKKMPGMGLRETFEARISQTLN 716 Query: 688 AANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM 747 A D K ++L+ E N++ MM +G++GS I Q+ G Sbjct: 717 KARDVSGKNASESLEAE---------------NNVRMMVMAGSKGSLINISQVTACVGQQ 761 Query: 748 -------------------AKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTAL 788 + + + ++ L ++F G R+GL DTA+ Sbjct: 762 NVEGHRISFSNQRTLPHFHKDDNRAESRGFVENSYLSSLRADEFFFHAMGGREGLIDTAV 821 Query: 789 KTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDV 848 KTA +GY+ RRL+ ++ + D + + + G D + + + + +D Sbjct: 822 KTAETGYIQRRLIKCMENCQIAFDGSVRNSS-DLITFLYGDDGFDASQIERV-EIGGKDF 879 Query: 849 LKPGTADILVPR 860 P + + Sbjct: 880 YLPFCFSRVYEK 891 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 3/57 (5%) Query: 876 SVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTM 932 + K+R + + +C+ G ++N GE +G +A+QSIGEP TQ+T+ Sbjct: 1064 KLQERKMR-QLELKSLISLCSLIKGA--YHRSLVNVGEMVGTLASQSIGEPATQMTL 1117 >UniRef50_A9UY22 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monosiga brevicollis RepID=A9UY22_MONBE Length = 1592 Score = 508 bits (1308), Expect = e-142, Method: Composition-based stats. Identities = 235/1352 (17%), Positives = 447/1352 (33%), Gaps = 299/1352 (22%) Query: 235 EWMILTVLPVLPPDLRPLVPLDGGRFATSD---LNDLYRRVINRNNRLKRLLDLAAPDII 291 E L VLPV P RP + G F S L + + V + K + ++ Sbjct: 303 ESFFLRVLPVPPNRFRPPSLMGGQTFENSQTITLGAIIKDVDQLRDIFKMRMSEEDGNVA 362 Query: 292 VRN---------EKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNL 342 + LQ V+ L+D+ G + + +++ K+G FR ++ Sbjct: 363 EYERKRVENLNRAWQQLQSHVNILIDSSLAGGRAALDVQ---PGIRQLLERKEGLFRMHM 419 Query: 343 LGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI------KA 396 +GKRV+Y+ R+VI+ P + ++ G+P A L P + L + Sbjct: 420 MGKRVNYAARTVISPDPMIGTNEVGVPDCFATRLTYPQPVTPWNVNYLRQCVLNGPDVHP 479 Query: 397 AKKMVEREEAVV-----------------------------WDILDEVIREHPVLLNRAP 427 V E+ V ++ + VL+NR P Sbjct: 480 GATHVMDEDGHVTVLSRELSKRVPIADQLLTPSPKARSDRPKIVMRHIKNGDWVLMNRQP 539 Query: 428 TLHRLGIQAFEPVLIEG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMS 486 +LH+ I A + ++ G + ++LH C +YNADFDGD+M +H P + A+ EA + + Sbjct: 540 SLHKSSIMAHQVRVLTGERTMRLHYSNCKSYNADFDGDEMNLHFPQSEFARAEASEIASN 599 Query: 487 TNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVLTGPKEAERLYRSGLASLH 545 + A G+P+ QD V+ M +D + L + Sbjct: 600 NFQYIGLA-GDPLRGLIQDHVIAAVKMCCKDSFYDRHHYQTFVYSA----LKDEYKGTRI 654 Query: 546 ARVKVRITEYEKDANGELVAKTSLKDTTVGRAILW------------------------- 580 V + + ++ G+ + T LK+ T+ + + Sbjct: 655 VTVPPAMIKPQRLWTGKQIITTILKNLTLNQTGMNLYGKAKIKNAWSANDKGGLEGESTV 714 Query: 581 MIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVG 640 ++ L I+++A + +++ Y + G + F + + G ++ Sbjct: 715 IVRNCELLCGILDKAQVGNSTYGIVHAVYEVYGGRTAGEFLSALGRVWTMWLKMHGHTLC 774 Query: 641 IDDMVIPEK----KHEIISEAEAEVAEIQEQF--------------QSGLVTAGERYNKV 682 IDD+++ + + EI+ ++ E + + +K Sbjct: 775 IDDLILRPEFDAARREILDDSTTHGHEAAANYVKQDDWRDDDLLKSNLQTILRDPGESKG 834 Query: 683 ID--IWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQL 740 +D + AAN SK + + K N+ ++ SGA+GS Q+ Sbjct: 835 LDSAMSGAANKIQSKVIEKTM--------PHGLIKPFPHNNFQLIVQSGAKGSNVNATQI 886 Query: 741 AGMRGLM--------------AKPDGSIIE------TPITANFREGLNVLQYFISTHGAR 780 + M G P + IT F GL +YF R Sbjct: 887 SCMLGQQMLEGRRVPVMSSGKTLPSFPAFDASLRAGGLITDRFLTGLRPQEYFFHCMAGR 946 Query: 781 KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVL 840 +GL DTA+KT+ SGYL R L+ +D+ V D + G D + + L Sbjct: 947 EGLVDTAVKTSRSGYLQRCLIKHLEDIKVHYDLTVRDSDGSVVQFRYGEDALDVTKTNSL 1006 Query: 841 GRVTAEDVLKPGTADILVPRN-TLLHEQWCDLLEENSV----------DAVKVRSVVSCD 889 T D + +L N L + + + + V + + D Sbjct: 1007 ---TNFDFMALNYPALLSRYNVEALGDAFPGKVRQAGKMQQEAIAQPAKHDPVLATLRPD 1063 Query: 890 TDFG-VCAHCYGR-------------DLARG----------------HIINKGEAIGVIA 919 T FG V + Y + DL++G + GE +G++A Sbjct: 1064 THFGCVSENFYKKLQGYLTKDPARLADLSKGLDAKRFEQLMYLISCRAVAEPGEPVGILA 1123 Query: 920 AQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRN 979 AQSIGEP TQ+T+ TFH G + + ++ +V ++ K Sbjct: 1124 AQSIGEPSTQMTLNTFHFAGRGDVNVT-----------LGIPRLREIVMTASKAA----K 1168 Query: 980 TELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTD 1039 T + ++ ++ A V + + + H+ + R Sbjct: 1169 TPIMIVPLRLSVP---QIQERARSLAARLAPVRLSDVLDRVEVHSKLAASRDGDRFRSYR 1225 Query: 1040 MIDGQTITRQTDELTGLSSLVV---LDSAERTAGGKDLRPALKIV--------------- 1081 + + +E+ G+ + L++ K ++ Sbjct: 1226 IRLSLIDKEEYEEVFGIGRKELFKALENKVVARLFKMGHRSIVTSSSDKIIAQGDGDDAE 1285 Query: 1082 --DAQGNDVLIPGTDMPAQYFLPGKAIVQL-----------EDGVQISSGDTLARIPQES 1128 D +G D + G + D + + D + Sbjct: 1286 AHDQEGGDDADGADVEANREIGEGDGTLAAPRQDEDQNAGDSDDDEAFANDVDMEADEGH 1345 Query: 1129 GGTKDI----TGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGK------------ 1172 G D+ + +A + ARR ++A I + ++KG+ Sbjct: 1346 GSDNDLEHATDQQVAELAKIAAARRKHRERVIALSPAIADYDYDSKGRWLEVELAVPASM 1405 Query: 1173 -------------RRLVITPVDGSDPYEEMIPKWRQLNVFE---GERVERGDVISDGPE- 1215 +++++ G +P+ L V E + +++ Sbjct: 1406 QKMLFVTILENSAKKIMLRETKGIKSCRVHVPEPDTLQVEGLNIYELWQHAELLELNSLK 1465 Query: 1216 --APHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD 1273 + + GV A R I+ E+ V+ + G+ +N +H+ ++ M Sbjct: 1466 CNDVNAMFETYGVEAGQRSIIRELSAVFDVYGIAVNHRHLSLVADYM------------- 1512 Query: 1274 FLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASL-ATESFISAASFQETTRVL 1332 EG+ G+ + S+ ++ SF+ TT L Sbjct: 1513 AFEGDY---------------------------RGMNRISMRSSTDPFLKMSFESTTDFL 1545 Query: 1333 TEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 + + G D L+ +++G + GTG Sbjct: 1546 RASTLRGDHDTLQSNSSRLVLGAVTAGGTGVC 1577 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 36/122 (29%), Gaps = 23/122 (18%) Query: 16 EFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKY 75 + + + R S + + + P GL+ + GPV + E Sbjct: 1 QVRGVSFGMFDDATTRRLSVKGISHADGFD-ELNNPMIGGLYDPAL-GPVDNSE------ 52 Query: 76 KRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDI 135 C C + T MGHIEL H F ++ LL R Sbjct: 53 --------RCTTCHLLGTHCP---GHMGHIELPVHVYHPLFF----QQLYQLLRAKCRLC 97 Query: 136 ER 137 + Sbjct: 98 HK 99 >UniRef50_P22705 DNA-directed RNA polymerase subunit beta' n=8 Tax=Cyanobacteria RepID=RPOC2_ANASP Length = 1355 Score = 505 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 206/642 (32%), Positives = 329/642 (51%), Gaps = 78/642 (12%) Query: 593 NQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHE 652 N+ + K + +++ + G T + AD++ GF YA R+G S+ +DD+++P K Sbjct: 10 NRVVDKGQLRNLISWAFTHYGTARTAVMADKLKDLGFRYATRAGVSISVDDLMVPPSKRS 69 Query: 653 IISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQ 712 ++ AE E+ + ++Q G +T ER+ KVID W ++ + ++ + + Sbjct: 70 LLEAAEEEIRATEVRYQRGEITEVERFQKVIDTWNGTSEALKDEVVTHFKQTN------- 122 Query: 713 EEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQY 772 NS+YMMA SGARG+ +Q+RQL GMRGLMA P G II+ PI NFREGL V +Y Sbjct: 123 -----PLNSVYMMAFSGARGNISQVRQLVGMRGLMADPQGEIIDLPIKTNFREGLTVTEY 177 Query: 773 FISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVK 832 IS++GARKGL DTAL+TA+SGYLTRRLVDV+QD+++ E DCGT GI + P+ EG Sbjct: 178 IISSYGARKGLVDTALRTADSGYLTRRLVDVSQDVIIREIDCGTTRGIPVRPMTEGSKTL 237 Query: 833 EPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDF 892 L R+LGRV EDV+ P T +++ PRNT + + +E+ V V VRS ++C+ Sbjct: 238 IKLSTRLLGRVVGEDVIHPKTKEVIAPRNTPISDDLAKEIEKAGVAEVVVRSPLTCEAAR 297 Query: 893 GVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQV 952 VC HCYG LA +++ GEA+G+IAAQSIGEPGTQLTMRTFH GG + A+ ++ Sbjct: 298 SVCQHCYGWSLAHAKMVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTGEVAQ-QVRS 356 Query: 953 KNKGSIKLS---NVKSVVNSSGKLVITSRNTELKLID------EFGRTKESYKVPYGAVL 1003 K G+IKL ++ G+ + + + +++ E +E + V G+ + Sbjct: 357 KMDGTIKLPRKLRTRTHRTRHGEDALFVESNGIMILEPRKEGSETPAPQEIH-VTQGSTI 415 Query: 1004 AKGDGEQVAGGETVANW-----------DPHTMPVITEVSGFVRFTDMIDGQTITRQTDE 1052 DG+QV G+ +A + V ++++G V+F +++ Q RQ + Sbjct: 416 YIVDGQQVKKGQLLAEVALGGRTTRTNTEKAVKDVASDLAGEVKFAEVVPEQKTDRQGNT 475 Query: 1053 LTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDG 1112 T A+G + I ++ Y LP A + +++G Sbjct: 476 TT--------------------------TAARGGLIWILSGEV---YNLPPGAELVVKNG 506 Query: 1113 VQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGK 1172 ++ + LA I GG+ R+ + + +E I+ + Sbjct: 507 DRVETNGVLAET-----KLTTIHGGVVRLPEATPGKSTREIEIIT--------ASVVLDQ 553 Query: 1173 RRLVITPVDGSDPYEEMIPKWRQLNVFE--GERVERGDVISD 1212 + + G + Y + N+ G +V+ G V+++ Sbjct: 554 ATVTVQSSQGRNNYLITTGNNQVFNLRATPGTKVQNGQVVAE 595 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 145/408 (35%), Positives = 200/408 (49%), Gaps = 46/408 (11%) Query: 1001 AVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFT----DMIDGQTITRQTDELT-G 1055 L DG+ + G VA ++++ G VR + + + R +D T Sbjct: 860 TSLEVKDGDTIVPGSVVAR-----TQILSKEGGIVRGVQKGSEAVRRCLVLRHSDMATLN 914 Query: 1056 LSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTD--------------------M 1095 +S+ + + + G +L P + + G V + Sbjct: 915 ISAKPKVKAGDLIVAGTELAPGI-FAEESGQIVGVKNAGESTTTQDAALSTQNYAVTIRA 973 Query: 1096 PAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAI 1155 Y + A++Q+EDG + GD L + E T DI GLPR+ +L EAR+PKE I Sbjct: 974 GRPYRVSPGAVLQIEDGDLVQRGDNLVLLVFERAKTGDIIQGLPRIEELLEARKPKEACI 1033 Query: 1156 LAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPE 1215 LA+ G V + + + + + L + +G V G +SDGP Sbjct: 1034 LAKRGGEVKVVYGDGDEAIAIKVIESNGVVTDYPLGPGQNLAMPDGSVVPAGQPLSDGPS 1093 Query: 1216 APHDILRLRG---------------VHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM 1260 PH+IL + + V ++VNEVQ VY+ QG+ I DKHIEVIVRQM Sbjct: 1094 NPHEILEVFFSLGSEDGVYACASHALQKVQTFLVNEVQMVYQSQGIDIADKHIEVIVRQM 1153 Query: 1261 LRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFI 1320 K I + G + L GE VE +V+ N + G A Y+ LLGITKASL T+SFI Sbjct: 1154 TNKVRIDDGGDTTMLPGELVELRQVEQVNEAMAITGGARAQYTPVLLGITKASLNTDSFI 1213 Query: 1321 SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD 1368 SAASFQETTRVLTEAA+ GK D LRGLKENVI+GRLIPAGTGY + + Sbjct: 1214 SAASFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLIPAGTGYNTYDE 1261 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 55/274 (20%), Positives = 94/274 (34%), Gaps = 43/274 (15%) Query: 938 GGAASRAAAESSIQ---VKNKGSIKLSNV--KSVVNSSGKLVITSRNTELKLIDEFGRTK 992 GG +R E +++ G +K + V + + G T+ L I Sbjct: 435 GGRTTRTNTEKAVKDVASDLAGEVKFAEVVPEQKTDRQGNTTTTAARGGLIWILSG---- 490 Query: 993 ESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDE 1052 E Y +P GA L +G++V +A T+ G VR + G++ E Sbjct: 491 EVYNLPPGAELVVKNGDRVETNGVLAETKLTTIH-----GGVVRLPEATPGKSTR----E 541 Query: 1053 LTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPA-------------QY 1099 + +++ VVLD A T R I + T +Y Sbjct: 542 IEIITASVVLDQATVTVQSSQGRNNYLITTGNNQVFNLRATPGTKVQNGQVVAELIDDRY 601 Query: 1100 FLPGKAIVQ-----------LEDGVQISSGDTLARIPQESGGTK-DITGGLPRVADLFEA 1147 ++ + G ++ G TL IP+E+ DI+ L EA Sbjct: 602 RTTTGGFLKFAGVEVQKKGKAKLGYEVVQGGTLLWIPEETHEVNKDISLLLVEDGQYVEA 661 Query: 1148 RRPKEPAILAEISGIVSFGKETKGKRRLVITPVD 1181 I + SG+V ++ R +V+ P + Sbjct: 662 GTEVVKDIFCQNSGVVEVTQKNDILREVVVKPGE 695 >UniRef50_A9BK83 DNA-directed RNA polymerase n=1 Tax=Cryptophyta RepID=A9BK83_9CRYP Length = 1323 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 228/1106 (20%), Positives = 395/1106 (35%), Gaps = 208/1106 (18%) Query: 7 FLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVK 66 + + + ++ + AS S S ++ + + +P + GL + + Sbjct: 2 ESYRKNFSNQLTGLEFSNASFFKNLSISQIQITNKFLYSNFSSQPCQGGLLDSTLGA--- 58 Query: 67 DYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGL 126 ++ IC+ C + G+I+L P +I +LK+ I L Sbjct: 59 -------------NKKNICKSCKKNQSYCS---GHFGYIKLFLPVLNIGYLKA----IQL 98 Query: 127 LLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEA-- 184 +L M + RVL + + + E Q LD L E E Sbjct: 99 ILSMICKSCSRVLVHPGKR-RNYFFKVIRKIKKKGEGQKLDYLSEISQECRQIDYCPFCW 157 Query: 185 -----IQAL-----LKSMDLEQECEQLR------------EELNETNSETKRKKLTKRIK 222 I+ + ++ + + + L+ +K+++ Sbjct: 158 SKNGSIRKFGTLGFVHDFKFQKNKKNFQNFNCSASLVFTEKILDPLGIFKIFQKISREDW 217 Query: 223 LLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL 282 L F P +IL LPV P +RP V + DL + N +LK Sbjct: 218 ELLDFDSIETHPTHLILYYLPVPPLGVRPTVFISETMTNEDDLTMKLTEIQFLNIQLKIN 277 Query: 283 LDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNL 342 P + +++ +LQ L++ S K+ KSL + +KGK GRFR NL Sbjct: 278 FQTGIPFLAIKDTWSILQIECGKYLNSEAFNL---ESGKQKFKSLFNRLKGKNGRFRGNL 334 Query: 343 LGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI-------- 394 GKRV++SGR+VI+ P L L+ GLP +A +L P K + L T+ Sbjct: 335 SGKRVNFSGRTVISPDPNLPLNFLGLPIILATKLTFPERVNKFNIERLQRTVLRGATRFP 394 Query: 395 --------KAAKKMVE-----REEAVV---WDILDEVIREHPVLLNRAPTLHRLGIQAFE 438 K KK +E +E + + I + +L NR P+LHR+ I A Sbjct: 395 GANFLIDLKNNKKHIENLSKKKEHLEIKSGYKIERHLKNNDIILFNRQPSLHRISIMAHR 454 Query: 439 PVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEP 498 +I GK ++++ +C YNADFDGD+M +H+P T +A+ E+ +L+ NI SP GE Sbjct: 455 TKIISGKTLKINECICKPYNADFDGDEMNIHIPQTQKARAESISLLNLVKNINSPGTGES 514 Query: 499 IIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKD 558 +I +QD + + +T + + + L G + + + + Sbjct: 515 MIAATQDFLSASFVLTSKNQFFSHDQI-----GKILHLLELGNIEKENFI-PALLKPFQM 568 Query: 559 ANGELVAKTSLKDTTVGRAILWMIVPKGLPY-SIVNQALGKKAISKML-----NTCYRI- 611 G+ + + + + N +LGKK S L ++ Sbjct: 569 WTGKQIFSLIVFSKKKKDKNKKKNFQGSIFHLMEKNYSLGKKQCSPFLCPFDGWILFKNR 628 Query: 612 -------------LGLK--------------PTVIFADQIMYTGFAYAARSGASVGIDDM 644 G K + +I ++ + G S GI+ + Sbjct: 629 NLLAGQLGKSSLGFGNKFSIFSSFSIFNSNNFILNCLLKISKMTSSWFSDFGFSFGIESI 688 Query: 645 VIP----EKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVID-IWAAANDRVSKAMMD 699 +KK+ ++ +Q ++ I I+ + K++ Sbjct: 689 TPDKNQLKKKNILVRNCYNLCNSFIKQNSKQKKKKEKQSESSIQKIFCFLREDFGKSLF- 747 Query: 700 NLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIE--- 756 + S NS +M +G++GS + Q++ G + I + Sbjct: 748 -------------VFNKFSENSGKIMTSAGSKGSKNNLSQMSLCLGQQSIGGERIKKGFL 794 Query: 757 -------------------TPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLT 797 I +F +GLN + +F + R+GL DTA+KTA +GYL Sbjct: 795 KRILPHFYYSKMGCNPSQNGFIQRSFLQGLNSVDFFFHSIAGREGLVDTAIKTAETGYLQ 854 Query: 798 RRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADIL 857 RRL+ +D+V+ D + G D + PG IL Sbjct: 855 RRLMKTLEDVVIFYDYSARTSDGRLIQPKFG-----------------LDCINPGKVSIL 897 Query: 858 VPRNTLLHEQ-----WCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHI---- 908 N + W S +RS D D + RDLA G + Sbjct: 898 FGLNNSYRKVENFHFWKKNNLNFSERETFLRSFSFGDMD-SIPFFFKIRDLAYGLLNFKN 956 Query: 909 -------------------------INKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASR 943 + G ++G +AAQSIGEPGTQ+T++TFH G + Sbjct: 957 QKKKIFFFDIEKNMKKILENCSKLKMEPGSSVGALAAQSIGEPGTQMTLQTFHHAGISDL 1016 Query: 944 AAAESSIQVKNKGSIKLSNVKSVVNS 969 + ++ + + +V+ Sbjct: 1017 NITQGVPRINEIMNASKKILSPIVSF 1042 Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 42/146 (28%) Query: 1220 ILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQ 1279 IL G+ A + I+ E+Q +++L + IN KH ++ M Sbjct: 1211 ILETFGIEASRKAIIIEIQKIFQLHNISINKKHFFLLAEIMT------------------ 1252 Query: 1280 VEYSRVKIANRELEANGKVGATYSRDLLGITKASLAT--ESFISAASFQETTRVLTEAAV 1337 + +LGIT+ ++ E+ + ASF++T L AA+ Sbjct: 1253 ----------------------FQGKILGITRYGISKMKENILVLASFEKTIETLFNAAL 1290 Query: 1338 AGKRDELRGLKENVIVGRLIPAGTGY 1363 +D++ G+ E++I+GR P GTG Sbjct: 1291 KTSKDKILGVSESIILGRKPPNGTGL 1316 >UniRef50_Q2GP10 DNA-directed RNA polymerase n=1 Tax=Chaetomium globosum RepID=Q2GP10_CHAGB Length = 1475 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 208/1127 (18%), Positives = 382/1127 (33%), Gaps = 213/1127 (18%) Query: 15 EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74 ++++ + + IRS S ++ T + P GL+ + G D Sbjct: 9 SSLESVEFTFLTAEEIRSISVKRIENDSTFD-NLLNPIPGGLYDPAL-GSWGD------- 59 Query: 75 YKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRD 134 +C C + Q GHIEL P H F+ D R Sbjct: 60 --------ALCLTCNLNQAQCP---GHPGHIELPVPVYHPVFM-----------DQAYRL 97 Query: 135 IERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDL 194 + + + + + L + F E ++ L S Sbjct: 98 LRAQCVYCHRFRLPRHEIHKYTCMFRVVQVGLIHEAHMIESFSVSDLGEQLRNLTLSDVP 157 Query: 195 EQECEQLREELNETNS------ETKRKKLTK--RIKLLEAFVQ-----SGNKP---EWMI 238 E ++ EE + ET +++ + R+K+ Q +KP + Sbjct: 158 NPEQDEAEEEGGNLHDGTMRARETYVRQVLRDHRLKVNIGRHQERQARGNSKPLSADMFF 217 Query: 239 LTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRN---NRLKRLLDLAAPD------ 289 ++ L V P RP + + + + N LY+ ++ ++ R + + Sbjct: 218 VSTLLVPPNRYRPEARMGDSQISEAQQNSLYKLILRSASLVAQISREISGQTKEDMMDES 277 Query: 290 ------IIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLL 343 + LQ+AV++L+D + + KR + + ++ K+G FR+N++ Sbjct: 278 RRTRDMSSLYQAWTELQDAVNSLIDRDKNPVQGAAA-KRNEEGIKQKLEKKEGLFRKNMM 336 Query: 344 GKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI------KAA 397 GKRV+++ RSVI+ P + ++ G+P A +L P + L + Sbjct: 337 GKRVNFAARSVISPDPNIETNEIGVPPVFARKLTYPEPVTSHNFKDLQQAVINGVDKWPG 396 Query: 398 KKMVEREEAVV-------------------------------WDILDEVIREHPVLLNRA 426 +E E + + + VL+NR Sbjct: 397 AAAIENENGQIVNLRAKSLEDRVSLANQLLAPTGNNFSGQRNKKVHRHLTNGDVVLMNRQ 456 Query: 427 PTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMM 485 PTLH+ I ++ G K I++H C YNADFDGD+M +H PLT EA L Sbjct: 457 PTLHKPSIMGHRVRVLPGEKTIRMHYANCNTYNADFDGDEMNMHFPLTEVRGAEALQLSD 516 Query: 486 STNNILSPANGEPIIVPSQ---DVV-LGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGL 541 + + +S G P+ D + L + + G+ ++ T K G Sbjct: 517 TDHQYISGTAGTPLRESGHITGDKIELVPPAIIKPAPRWTGKQVITTILKNIRPA-DCGD 575 Query: 542 ASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAI 601 ++ KV+ + +D+ V M I++++ + Sbjct: 576 LWMNGSAKVKSRSWGEDSEEGQV----------------MFRDGEFISGILDKSQLGPSD 619 Query: 602 SKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEK----KHEIISEA 657 ++ + + G I Y A + G+DD+ + + + E I A Sbjct: 620 GGFVHAVHEVYGPSVAGKLLSSIGRLLTRYLAMVAFTCGMDDLRMTPQGEKDRKETIKAA 679 Query: 658 EAEVAEIQEQF-----------QSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETV 706 E+ ++ L+ E ++ S+ T Sbjct: 680 VNIGIEVAAKYVSLGEQKPTKDDPLLLERLEEVHRDDKKQEGLELLTSQECAKLSTEITR 739 Query: 707 INRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM--------------AKPDG 752 + EKQ N + M SGA+GS ++ G P Sbjct: 740 LCLPAGLEKQFPKNHMQSMTTSGAKGSPVNANLISCNLGQQVLEGRRVPVMVSGKTLPSF 799 Query: 753 SIIET------PITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQD 806 +T I F G+ +Y+ R+GL DTA+KT+ SGYL R L+ + Sbjct: 800 KPYDTDVRAGGYIVNRFLTGIRPQEYYFHHMAGREGLIDTAVKTSRSGYLQRCLIKGMEG 859 Query: 807 LVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLL-- 864 L V+ D + + G D + + + L E VL+ + + R Sbjct: 860 LRVSYDSSVRDSDGTVVQFLFGEDGIDIGKQKYLNDF--EFVLRNLDSQLPQIRYHESGT 917 Query: 865 -----HEQWCDLLEENSVDAVKVRSVVSCDTD--------FGVCAHCY------------ 899 H ++++ + R+ + + F Y Sbjct: 918 QALFEHRDEIMKRMKSAIRSSSTRNPLDPVSSEVDPTAFAFATSEKFYSKMMDYVKTNKD 977 Query: 900 -------GRDLARGH-----------------IINKGEAIGVIAAQSIGEPGTQLTMRTF 935 G D +G ++ GEA+G++A QS+GEP TQ+T+ TF Sbjct: 978 GLIKEKKGSDSQKGQIARKTAEKILAAKYIRSLVEPGEAVGIVAGQSVGEPSTQMTLNTF 1037 Query: 936 HIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTEL 982 H+ G +++ +++ I ++ + S LV+ +EL Sbjct: 1038 HLAGHSAKNVTLGIPRLR---EILMTASSKISTPSMTLVLNEELSEL 1081 Score = 49.7 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 53/137 (38%), Gaps = 8/137 (5%) Query: 1138 LPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLN 1197 +P++ L + + +++ +I I + E K ++ + + Sbjct: 1316 IPKILMLSLVQEAVKKSVIQQIHRIGNAAFEPKKRKDEATGEERIVEMLVHTDGANLRAM 1375 Query: 1198 VFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIV 1257 G+ + + ++ +L + GV A IV E+ V+ G+ ++ +H+ +I Sbjct: 1376 QQYGDYINPNRISTN---DIAQVLEVYGVEACRSNIVAELSGVFAGHGIAVDPRHLNLIA 1432 Query: 1258 RQMLRKATIVNAGSSDF 1274 M R N G S F Sbjct: 1433 DYMTR-----NGGFSAF 1444 >UniRef50_Q110H3 DNA-directed RNA polymerase subunit beta' n=5 Tax=Cyanobacteria RepID=RPOC2_TRIEI Length = 1415 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 200/589 (33%), Positives = 311/589 (52%), Gaps = 68/589 (11%) Query: 591 IVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKK 650 N+ + K + K+++ + G T A+++ GF YA ++G S+ +DD+ +P K Sbjct: 3 FYNRVINKGQLKKLISWSFNNYGTAITAQMANKLKDLGFRYATKAGVSISVDDLQVPPSK 62 Query: 651 HEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRD 710 +++ EAE E+ E++ G +T ER+ KVID W + ++ + ++ N ++ Sbjct: 63 RQLLDEAEQEIRNTTERYTKGKITEVERFQKVIDTWNSTSENLKNEVVRNFRSTD----- 117 Query: 711 GQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVL 770 NS+YMMA SGARG+ +Q+RQL GMRGLMA P G II+ PI NFREGL V Sbjct: 118 -------PLNSVYMMAFSGARGNISQVRQLVGMRGLMADPQGEIIDLPIKTNFREGLTVT 170 Query: 771 QYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGD 830 +Y IS++GARKGL DTAL+TA+SGYLTRRLVDV+QD++V E DCGT G+M+T + +G Sbjct: 171 EYIISSYGARKGLVDTALRTADSGYLTRRLVDVSQDVIVREADCGTKRGVMVTSMKDGDR 230 Query: 831 VKEPLRDRVLGRVTAEDVLKPGTADIL------VPRNTLLHEQWCDLLEENSVDAVKVRS 884 V P++DR+LGRV A+DV P T +I+ +N +L E + + V+ V VRS Sbjct: 231 VLIPVKDRLLGRVLADDVKDPKTGEIVTQGHIQAVKNQVLTEDLAKAIGKAGVENVFVRS 290 Query: 885 VVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRA 944 ++C++ VC CYG LA GH+++ GEAIG+IAAQSIGEPGTQLTMRTFH GG + Sbjct: 291 PLTCESPRSVCQTCYGWSLAHGHMVDMGEAIGIIAAQSIGEPGTQLTMRTFHTGGVFTGE 350 Query: 945 AAESSIQVKNKGSIKLS---NVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGA 1001 A + G +K +S G + + N +I KE+ + G+ Sbjct: 351 VARQFV-ASFGGVVKYPSNVRTRSFRTRHGDEAMIAENNFDMIILGVDGRKETIPIAQGS 409 Query: 1002 VLAKGDGEQVAGGETVANW----------DPHTMPVITEVSGFVRFTDMIDGQTITRQTD 1051 +L + +QV+ G +A + T V ++++G ++F ++ + + +Q Sbjct: 410 ILMVQNNQQVSAGIVLAEVPKVGQVRKTTEKVTKEVASDLAGELKFAQLVQEEKVDKQG- 468 Query: 1052 ELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLED 1111 +I G ++ G Y LP A +++ Sbjct: 469 ------------------------TTTRIAQRGGLIWILEG----EVYNLPPGAEAMVKN 500 Query: 1112 GVQISSGDTLARIPQESGGTKDITGGLPRVAD--LFEARRPKEPAILAE 1158 G +I+ LA + GG+ R++ L+ + E +LA+ Sbjct: 501 GTRININSVLAETKLVTEH-----GGVIRISSSPLYSPEKQNETNVLAQ 544 Score = 330 bits (846), Expect = 3e-88, Method: Composition-based stats. Identities = 142/409 (34%), Positives = 205/409 (50%), Gaps = 42/409 (10%) Query: 1000 GAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRF----TDMIDGQTITRQTD--EL 1053 L DG+ + G V+ ++++ SG VR ++ I I R+ D ++ Sbjct: 890 STRLLVKDGDVIEAGGVVSR-----TQILSKKSGEVRGIREGSEAIRRILIVREADLVKI 944 Query: 1054 TGLSSLVVLDSAERTAGGKDLRPALKIVDA------------QGNDVLIPGTDMPAQYFL 1101 + V++ + G ++ P + I + G+ Y + Sbjct: 945 PVNTLPSVVE-GDLLVAGTEIAPGIVIPRSGLVSKVEETVLNDGSKGYQVILRKGRPYRV 1003 Query: 1102 PGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISG 1161 A++ DG + GD L + E T DI GLPR+ +L EAR+PKE IL + G Sbjct: 1004 STGAVLLTMDGDLVQRGDILVLLVFERTKTGDIIQGLPRIEELLEARKPKESCILVKYPG 1063 Query: 1162 IVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDIL 1221 V++ + + + + V +G+ V G+ ++DGP+ PH+IL Sbjct: 1064 QAQVNVNDDNVEVSVVSSD--GTITDYPLGHGQNVIVADGQNVNVGEALTDGPQNPHEIL 1121 Query: 1222 R----------------LRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKAT 1265 LR A R++VN+VQ VY+ QG+ I+DKHIEVIVRQM K Sbjct: 1122 ETFFNYYREHESAYEACLRSFEACQRFLVNQVQAVYQSQGIDISDKHIEVIVRQMTAKVR 1181 Query: 1266 IVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASF 1325 I + G + L GE +E +V+ N + G A Y+ LLGITKASL T+SFISAASF Sbjct: 1182 IDDGGDTTMLPGELIELRQVEQVNEAMSITGGATAQYTPMLLGITKASLNTDSFISAASF 1241 Query: 1326 QETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRA 1374 QETTRVLTEAA+ GK D LRGLKENVI+GRLIPAGTG+ ++D + Sbjct: 1242 QETTRVLTEAAIEGKSDWLRGLKENVIIGRLIPAGTGFNAYEDALSAEI 1290 >UniRef50_Q98RN1 DNA-directed RNA polymerase n=1 Tax=Guillardia theta RepID=Q98RN1_GUITH Length = 1289 Score = 494 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 213/1034 (20%), Positives = 377/1034 (36%), Gaps = 137/1034 (13%) Query: 17 FDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYK 76 I+ + S + I +S ++ + L ++ Sbjct: 6 IHEIEFKIFSREEISGYSTIQLTNSNIFLKDKNTSQEGSLLDEKLG-------------- 51 Query: 77 RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIE 136 R IC C + + GH+ L+ P ++ F+K+ I +L M + Sbjct: 52 --NIRNQICSFCKDKFKFCQ---GHYGHLRLSMPVLNLGFIKT----IQCILQMVCKRCS 102 Query: 137 RVLYFESYVVIEGGM--TNLERQQILTEEQYLDALEEFG--DEFDAKMGAEAIQALLKSM 192 +L S I ++ ++ Y + LE+ + + + ++ Sbjct: 103 SLLLRSSKEKIHFSFLLGKNSNNKVEKKKIYFNILEKCKSHRKCPNCEFSNGKIRKISNL 162 Query: 193 DLEQECEQLREELNETNSETKRKKLTKRIKLLE----AFVQSGNKPEWMILTVLPVLPPD 248 + + + E+NE K ++ +I + G + E +I +P+ P Sbjct: 163 AFLHDIDNSKNEINEILGPLKIFQIFSKINAEDLELIGVNDYGFRIENLIFFFIPIPPSI 222 Query: 249 LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLD 308 +RP + +D DL + N N +LK L+ ++ LQ D Sbjct: 223 IRPSIRIDTYTTNEDDLTIKLASIQNTNKKLKYELEQNMNYNRIKELWTFLQIECYQYFD 282 Query: 309 NGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGL 368 + + + +KGK GRFR L+GKRVD+S R+VI+ P L L Q G+ Sbjct: 283 SDF----FQKKFNLKFQGVFQRLKGKNGRFRGTLIGKRVDFSARTVISPDPNLFLSQIGI 338 Query: 369 PKKMALELFKPFIYGKLELRGLATTIKAAKK-------MVEREEAVVW------------ 409 P + L P L I ++ R+ ++ Sbjct: 339 PIIICKNLSFPEKLNFYNYERLKRCILRGNDRYPGVVSVITRDNKKIFLNKSNKKNMMFF 398 Query: 410 -----DILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGD 464 I +++ +L NR P+LHRL I A + + K +L+ VC YNADFDGD Sbjct: 399 SKIGNSIQRHLVKNDIILFNRQPSLHRLSIMAHRIRIFKEKTFRLNHCVCKPYNADFDGD 458 Query: 465 QMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEG 524 +M +HVP + ++ EA L+ S NN +P NGE +I SQD + + +T + E Sbjct: 459 EMNLHVPQSETSRTEAITLLNSYNNFYTPRNGEILIACSQDFLSYSFILTSRNIFFNKEE 518 Query: 525 MVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAK--TSLKDTTVGRAILWMI 582 + E L+ + L A +K +I K E++ + + Sbjct: 519 VTGLISGEVSDLFNNILP---AILKPKILWTGKQIFSEILFFDKNYYHLNLIKKQKTNYQ 575 Query: 583 VPKGLPYSIVNQAL----------------------GKKAI--SKMLNTCYRILGLKPTV 618 + + N GK ++ ++ Sbjct: 576 IREKFTSRQFNTCSPFVCPIEGWTIIKNNLILSGRLGKTSLGTGNKMSLFSFSRNNNSAS 635 Query: 619 IFADQIMYTGF---AYAARSGASVGIDDM----VIPEKKHEIISEAEAEVAEIQEQFQSG 671 + I+ + + G S I+++ VI +KK +IIS+A+ + + Sbjct: 636 EILNSILKISILNQNWFSNYGFSFSINNVKPSKVICKKKEQIISKAK----NVHQSLNYK 691 Query: 672 LVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGAR 731 + V+D + + + ++ +L R K + NS +M SG++ Sbjct: 692 KKITNKNSLMVLDTFEEKLNIILNSVKGDLG------RICVTTKNIDNNSASIMVASGSK 745 Query: 732 GSAAQIRQLAGMRGLMAKPDGSIIETP----------------------ITANFREGLNV 769 GS + Q+ G I+ I +F GL+ Sbjct: 746 GSQLNLVQMMLTLGQQMISAKRILNGFSYRILPSQSFKKENMLFNEKGLIENSFYSGLDS 805 Query: 770 LQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGG 829 ++F + R+GL DTA+KTA GYL RRLV +D+ + D + GG Sbjct: 806 KEFFFHSMAGREGLIDTAVKTAEIGYLQRRLVKSLEDISIMNDSTVRDSFGRIYQFTFGG 865 Query: 830 DVKEPLRDRVLGRVTAEDV---LKPGTADILVPRN------TLLHEQWCDLLEENSVDAV 880 D P + + D LK T + L+ + N ++ Sbjct: 866 DNVNPENFSKFYSINSFDFSLKLKKSTDNYLLYVFLRAHFLRFFDSLTFSINLRNKINFE 925 Query: 881 KVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGA 940 K+ ++ S F + Y + + II+ G +G I+AQS+GEPGTQ+T++TFH G Sbjct: 926 KILNIKSNFGYFEILIKKYFQTF-KLVIIDPGTGVGCISAQSLGEPGTQMTLQTFHSAGT 984 Query: 941 ASRAAAESSIQVKN 954 S+ ++ Sbjct: 985 GSQNITSGIPRINE 998 Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 55/150 (36%), Gaps = 42/150 (28%) Query: 1216 APHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFL 1275 + I G+ A IV E+ + ++ G+ +++H+ ++ M Sbjct: 1179 NINSIYNFLGIEASRELIVLEITNTFKSHGIFSDNRHVYLLADYMT-------------- 1224 Query: 1276 EGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASL--ATESFISAASFQETTRVLT 1333 ++ ++GI + L ES ASF++T L Sbjct: 1225 --------------------------FNGFIIGINREGLTCNKESVFLLASFEKTMENLF 1258 Query: 1334 EAAVAGKRDELRGLKENVIVGRLIPAGTGY 1363 A++ + + G+ + +I G IP GTG Sbjct: 1259 NASLNHTKSKYIGVSDAIIFGNSIPIGTGL 1288 >UniRef50_A5K7T9 DNA-directed RNA polymerase n=1 Tax=Plasmodium vivax RepID=A5K7T9_PLAVI Length = 1946 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 180/952 (18%), Positives = 333/952 (34%), Gaps = 169/952 (17%) Query: 16 EFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKY 75 E ++K + + I S ++ E T P G+ ++ Sbjct: 56 EIKSLKFGIMDKEEIIKCSEVKILNREMYKNNTGIPYPYGVLDLKLGA------------ 103 Query: 76 KRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIG---LLLDMPL 132 +CE C G+IEL P H+ + K + + + L Sbjct: 104 ---HKSNSLCETCHRNFMNCS---GHFGYIELNYPLFHVGYYKYIIYILYCICKVCSHIL 157 Query: 133 RDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLK-- 190 E++ ++ + +R ++ L++ ++ + I+ ++K Sbjct: 158 LTNEKLEFYTNLKRRTVEDKFFKRHIF---KKILNSCKKVTKCYRCGYPQGVIKKIIKPS 214 Query: 191 ---SMDLEQECEQLRE----ELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLP 243 M L+ + + + L K + + + PE +++T L Sbjct: 215 LDQFMKLKHVIKTKENGKMVIKEDDLNSLYVLNLFKNMNPYHVKLLNVESPEKLLITALL 274 Query: 244 VLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAV 303 V P +RP V +D A DL + + NN + LQ + Sbjct: 275 VPPNTIRPSVVIDEHGTAEDDLTCILSEITQLNNTINNQCSNGYQTNQFLGNVEFLQLQI 334 Query: 304 DALLDNGRRGRA---ITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360 +++ + T + +P + + +KGK+GRFR NL GKRVD+S R+VI+ P Sbjct: 335 TRFINSDSPAVSQLLATQNISKPGRGICQRLKGKEGRFRCNLSGKRVDFSSRTVISPDPN 394 Query: 361 LRLHQCGLPKKMALELFKPFIYGKLE-------LRGLATTIKAAKKMVER---------E 404 + + + +P+ +A+ L P + +R +T A ++++ Sbjct: 395 ISIDEVVVPESIAMRLTYPEKVNRYNMAKLKRLIRNGTSTWPGANYVIKKACGQGGASPR 454 Query: 405 EAVVWDILDEVIREHP--VLLNRA----------PTLHRLGIQ---------------AF 437 + D++ + HP VLL A P ++++ ++ Sbjct: 455 GDSLIDVVKRYV-GHPSGVLLPTAASVGDPRRGNPAINKISLKYANKRLVVENLQVGDVV 513 Query: 438 EPVLIEGKAIQLH--------------------------PLVCAAYNADFDGDQMAVHVP 471 E L++G + + VC+ YNADFDGD+M +HVP Sbjct: 514 ERHLVDGDIVLFNRQPSLHRMSIMCHKARVMKYKTFRFNECVCSPYNADFDGDEMNLHVP 573 Query: 472 LTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPK 531 T EA+ EA LM NN+++P NGE II +QD + Y +T + L Sbjct: 574 QTEEARAEALYLMNVKNNLITPKNGEVIIALTQDFLSASYVITNKDTFLDRDSFCLLCS- 632 Query: 532 EAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPK------ 585 Y S I + ++ G+ + +K T I+ + + Sbjct: 633 -----YFSDAKVNIDLPVPAILKPKELWTGKQLISVLIKPNTKENTIINFEIKEREYSTK 687 Query: 586 --GLPYSIVN-------------QALGKKAISK----MLNTCYRILGLKPTVIFADQIMY 626 L + +N +LGKK + + + ++ Sbjct: 688 NGDLKHMCLNDSYVCFYKSELICGSLGKKVLGSSKYGLFYYLIHHNSSYVALKIMNRFSK 747 Query: 627 TGFAYAARSGASVGIDDM----VIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKV 682 Y + G ++GIDD+ + +KK +++ +V + + Sbjct: 748 LTSRYFSNKGMTIGIDDVTPSDTLLQKKKDLLQAGYEKVNREIALYNEKKMQIQPGC--- 804 Query: 683 IDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAG 742 + K ++D+L+ + + N +M +SGA+G+ I Q+ Sbjct: 805 --TLEETLEIKVKNILDDLRND---AGKTCNQYLDHLNKPLIMFNSGAKGALINIAQMIA 859 Query: 743 MRGLMAKPDGSI--------------------IETPITANFREGLNVLQYFISTHGARKG 782 G I + +F GLN ++F T R+G Sbjct: 860 CVGQQNVTGQRIQNGFINRTLPHFNFHCKDSESRGFVQNSFYTGLNPTEFFFHTMSGREG 919 Query: 783 LADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEP 834 L DTA+KTA +GY+ RRL+ +DL + D + I G D P Sbjct: 920 LVDTAVKTAETGYMQRRLMKALEDLSIHYDFSVRSCDKQIVQFIYGDDALNP 971 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 109/518 (21%), Positives = 193/518 (37%), Gaps = 74/518 (14%) Query: 906 GHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKS 965 +I G+A+G I+AQSIGEPGTQ+T++TFH G AS + + +K Sbjct: 1445 KYISAPGDAVGSISAQSIGEPGTQMTLKTFHFAGVASMNVT-----------LGVPRIKE 1493 Query: 966 VVNSSGKLVITSRNTELKLIDEFG-------------------RTKESYKVPYGAVLAKG 1006 ++N+S + N L++ D + KE Y G L+ Sbjct: 1494 IINASSTIQTPILNIPLQVKDSYNFALMMKSKLEKTTVRDICLYIKEDYTA-RGIFLSVK 1552 Query: 1007 DGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLD--S 1064 EQ+ N + +T+ I + + + + + D SL + Sbjct: 1553 FNEQLIHN-LFLNINAYTIRDI--IMRQSHISKIKINKILVEVVDAYKLHMSLKNDEFLF 1609 Query: 1065 AERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQ--LEDGVQISSGDTLA 1122 + A K L L D +I ++ + G + L Sbjct: 1610 FQMEALKKGLLDLLIHGDKDIKRCIIKKEEVEVTDGEASGGEESGGVVSGELVQPSGELV 1669 Query: 1123 RIPQESGG-TKDITG-------GLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRR 1174 + E + ++ G ++ + EA + +++ E + Sbjct: 1670 QPSGELVQPSGELVQTTAKEGAGEAKLRSIMEAFDVQMKQEMSKGEIPPGAEGEDEPVVH 1729 Query: 1175 LVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIV 1234 L +D + + I + R + +R G++ S G + + + + +V Sbjct: 1730 LDTINIDALNFEKININQIRHEKIDHYDR--DGNLYSGGNGPECEEKKKKKKKIIYSILV 1787 Query: 1235 --NEVQDVYRLQGVKINDKHIE----VIVRQML----RKATIVNAGSSDFLEGEQVEYSR 1284 N + V L+GV KHI + V Q+L + TI+N VE Sbjct: 1788 EGNSLNYVLGLEGVDF--KHIISNHVINVFQVLGIEAARVTIINEIKK------CVEAYS 1839 Query: 1285 VKIANRELEANGKVGATYSRDLLGITKASLATE--SFISAASFQETTRVLTEAAVAGKRD 1342 + I R + + A ++ D+LGI + + S + ASF+ET L ++ RD Sbjct: 1840 IDIDIRHIMLLADIMA-FTGDILGINRFGIQKARHSTLMLASFEETNEHLFVSSFFKNRD 1898 Query: 1343 ELRGLKENVIVGRLIPAGTG-----YAYHQDRMRRRAA 1375 E+ + E++IVG+ IP GTG Y Y +R R+ Sbjct: 1899 EINNISESIIVGKNIPIGTGAFQLLYDYKFNREERKLT 1936 >UniRef50_Q3LWE3 DNA-directed RNA polymerase n=1 Tax=Bigelowiella natans RepID=Q3LWE3_BIGNA Length = 1510 Score = 493 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 189/915 (20%), Positives = 363/915 (39%), Gaps = 138/915 (15%) Query: 3 DLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETIN-YRTFKPERDGLFCARI 61 D ++ K++ K ++ AI + + D I+ +S ET++ RT + L ++ Sbjct: 2 DFKRYTKSKAKIKKPIAIVYGILNSDEIKRYSIHCFNNKETLDISRTLE----NLDIPKM 57 Query: 62 FGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLP 121 C ++ K GHIEL P + + Sbjct: 58 GTIENTSICP------------------LDSNTGKDCPGYFGHIELFLPVFNCNY----- 94 Query: 122 SRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLE---------RQQILTEEQYLDALEEF 172 L + L+ ++ V Y+ S ++IE TN++ R I+++E + Sbjct: 95 ------LGLILKILKSVNYYTSALLIEKTRTNIQELLKHNISDRISIISKEADRVKTDLL 148 Query: 173 GDEFDAKMGA-EAIQ-----ALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEA 226 +F + + + IQ L ++ +L + + K ++K + Sbjct: 149 SGDFLPEYESLKGIQIWMRFPLCVKQGKFNPNILVKRKLFPEQAYSILKNISKFDCNILG 208 Query: 227 FVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLA 286 F ++P W+IL LP+ P ++RP + DL +I N+RL+R + Sbjct: 209 FDFKNSRPNWLILYNLPIPPINIRPYSKKNLFIKYEDDLTYKLHDIIKANDRLQRSKNSR 268 Query: 287 APDIIVRNEKRMLQEAVDALLDNGRRGRAI-TGSNKRPLKSLADMIKGKQGRFRQNLLGK 345 ++ N + +L + DN + T + +P+KS++ +KGK GRFR+NL+GK Sbjct: 269 KSSELLENYRELLSYHIFTYFDNSSTKVKLSTHVSGKPIKSISQRLKGKFGRFRRNLVGK 328 Query: 346 RVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKA------AKK 399 RVD++GR+VIT Y+ L + G+P +A +L P + K + L+ I + A Sbjct: 329 RVDFTGRTVITGDSYIHLEELGIPMLIAKKLTLPEVVNKFNIDRLSYIIDSTGNELKANY 388 Query: 400 MVEREEAVV----------------WDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIE 443 +++ V+ + I + V+LNR P+LH++ + + Sbjct: 389 IIKGYNKVIDLRYKSSNSIILLKYGFIIERHIQSGDIVILNRQPSLHKMSMMGHRVKIFP 448 Query: 444 GKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPS 503 +L+ V YNADFDGD+M +H+P + + E+ +M NNI+SP +P+I Sbjct: 449 KLTFRLNLSVTTPYNADFDGDEMNIHIPQSELTRSESTFIMNVINNIMSPQANKPVIGLV 508 Query: 504 QDVVLGLYYM-TRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGE 562 QD + Y + +RD E L + + + I + K G+ Sbjct: 509 QDTLSTCYTLSSRDSFLNSLEKDYLKNNYK------------NFSTQPSIIKPLKKWTGK 556 Query: 563 LVAKTSLKDTTV---------------GRAILWMIVPKG-LPYSIVNQALGKKAISKMLN 606 + + L T M + G + + N+ + + ++ Sbjct: 557 QLLSSFLPHLTFLHRESRKTFHFEDSNNYNDSSMYIQDGKIMMGLFNKKTIGASYNSIIQ 616 Query: 607 TCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEA------- 659 + F D T ++G +V + D+ + +K I + Sbjct: 617 NIWLEYDHFSCRNFIDLCQTTARHTNIKNGFTVSLWDVFLEKKLFNIFYNIKKFYIHNWI 676 Query: 660 EVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSF 719 ++ E ++Q + + ++N + I + + + + NL N++ Sbjct: 677 KLMETKKQIKMTQIKNF-KFNTITKINNLSTTKKYFSSLINLFLNLTHNQN--------- 726 Query: 720 NSIYMMADSGARGSAAQIRQLAGMRGLMAKP--------DGSII------------ETPI 759 N++ +M +SG++GS + Q+ G+ G + G + I Sbjct: 727 NNMNIMLNSGSKGSLINLIQIVGLLGKQSSIKINNMNHFHGRLFCHNIIGHIPIESTGFI 786 Query: 760 TANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEG 819 +NF GLN +YF R+G+ DT++KTA +GY+ R+ ++L+ D + Sbjct: 787 LSNFFYGLNPHEYFCHAISGREGIIDTSIKTAETGYIQRKFSKSMENLICYYDGTVRNSS 846 Query: 820 IMMTPVIEGGDVKEP 834 + + G D +P Sbjct: 847 QSIIQFLYGEDGLDP 861 Score = 96.7 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 76/544 (13%), Positives = 167/544 (30%), Gaps = 78/544 (14%) Query: 834 PLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSV-VSCDTDF 892 L LG++ L T N +++ L+ +N ++S+ ++ Sbjct: 968 NLLSIYLGKLYNSLSLSRKTCYFKALFNKIINPSIV-LIIKNIFTVKLIKSLKINLFQLK 1026 Query: 893 GVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQV 952 + + + GE +GVI AQSIGEP TQ+T+ TFH G A + + Sbjct: 1027 WIFKQ--IENKYNKSLTTPGECVGVIGAQSIGEPTTQMTLNTFHYAGIAEKDVTTGVPRF 1084 Query: 953 KNKGSIKLSNVKSVVNSSGKLVITSRNTELK--LIDEFGRTKESYKVPYGAVLAKGDGEQ 1010 + K+ + + + E +I TK + V +L D + Sbjct: 1085 NELINA-TKKPKTKCSYLSLIHNSKLEIESTDFIISRLEETKLEFFVEKLYLLKVFDSQY 1143 Query: 1011 VAGGETVANWDPHT-MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTA 1069 + +++ ++ + ++ + E + +++ Sbjct: 1144 -TRIDFISSILKNSLESINPSSKSDQNPRWILKLIISRWRLFEKKISIVKLFKKLSDKLK 1202 Query: 1070 GGKDLRPALKIVDAQGNDV-LIPGTDMPAQYFL------PGKAIVQLEDGVQISSGDTLA 1122 ++ + D + ++ +I + A Y + P K +++ ++ + Sbjct: 1203 NYGNI--QISFADKKFIEIAIIISNTLFAPYSIKLLDVDPKKKTPHIKERCKLGVRKSKF 1260 Query: 1123 RIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDG 1182 E ++ + + + D+ R + + ++ G Sbjct: 1261 LYILEKFKSEILNIPILGIPDIVHCRVSNKVRTFINN-----LNYDLNSLENFILLDCIG 1315 Query: 1183 SDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYR 1242 + + + W ++ V G+ A + E++ + Sbjct: 1316 INLVKTLTHPWIDSSLTYCNDVNC-------------FYDNFGIEAARLLFIKELKKILE 1362 Query: 1243 LQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATY 1302 IN HI + T Sbjct: 1363 FDNSYINQHHISCLADYSTN--------------------------------------TG 1384 Query: 1303 SRDLLGITKASLATESF--ISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAG 1360 I + L +S + SF+ET + L +A+V K D + E +I G+ G Sbjct: 1385 RP--NAINRYGLKVQSLSTLQECSFEETMKTLLKASVETKVDRFSSITETIIFGKESNFG 1442 Query: 1361 TGYA 1364 TG++ Sbjct: 1443 TGFS 1446 >UniRef50_Q4A369 DNA-directed RNA polymerase n=2 Tax=dsDNA viruses, no RNA stage RepID=Q4A369_EHV86 Length = 1468 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 288/1565 (18%), Positives = 501/1565 (32%), Gaps = 316/1565 (20%) Query: 11 QTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYEC 70 T + + ++ D IR + V E Y P +G+ + Sbjct: 8 STNAKVVKKVNFSVYGSDAIRQNAVTRVN--EIALYTRGIPTHNGVNSLAM--------- 56 Query: 71 LCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDM 130 R + C C + + G I L P ++ D Sbjct: 57 ------GSSDRRIRCTTCNELMQKCP---GHNGEIRLPLPVYQALYI-----------DH 96 Query: 131 PLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLK 190 L+ + V +F S + + ++ ++ + + I+ Sbjct: 97 TLKVLRSVCFFCSEICLTDEDKVALMEKYTDDKTRFNHTYAIARTRKKCPHCKGIRPSYV 156 Query: 191 S---------MDLEQECEQLREELNETNSETKRKKLTKRIKLLEA--FVQSGNKPEWMIL 239 +D E E+ +E + + + IK +A F G P +I Sbjct: 157 RGPLGIKTEWVDKSFESEEEQEYAMQKFTPALAYSILDNIKDTDATNFFGKGLHPRDLIA 216 Query: 240 TVLPVLPPDLRPLVPLDGGRFA--TSDLNDLYRRVINRNNRLK----RLLDLAAPDII-- 291 T + V PP +RP + G D+ + + R N L+ + D P + Sbjct: 217 TSVLVPPPIIRPAISTAEGSRTKGQDDITLRLQEINRRGNELRLCMNKQEDSGLPTFLCD 276 Query: 292 -----------------------------VRNEKRMLQEAVDALLDNG--RRGRAITGSN 320 + + LQ V L++ R G + +N Sbjct: 277 ANKVLPQKTDTITYTVVDRLLNVDALTPDLIDRWNRLQADVFGLVNPAAIRGGMPASMAN 336 Query: 321 KR----PLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALEL 376 K + D I+GK GRFR L+GKRV++SGRSVIT + + Q G+P ++A+ L Sbjct: 337 NNRNSANGKYIIDRIRGKNGRFRNCLMGKRVNFSGRSVITPDSTIDVDQLGVPYELAMIL 396 Query: 377 FKPFIYGKLELRGLATTIKAAKKMVEREEAVV-----------------------WDILD 413 P + L T I + ++V+ W + Sbjct: 397 TVPEKVTPSNIADLRTRILNGPTELIGAQSVINTEGDLISLKSCKNRADIVLRIGWIVER 456 Query: 414 EVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLT 473 + V+ NR PTLHR+G VL +GK +L+ VCA YNADFDGD+M +HV + Sbjct: 457 HLKNGDWVIFNRQPTLHRMGFNGHRVVLTKGKTFRLNLSVCAVYNADFDGDEMNIHVCQS 516 Query: 474 LEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEA 533 A E LM NI+S N +P QD ++G + MT V M+ Sbjct: 517 ACATSEVSTLMAINRNIISAQNNKPCFGIVQDSLVGAWLMTDPSVFLTRADMLRFRIYV- 575 Query: 534 ERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDT-----------TVGRAILWMI 582 + I++ ++ G + T T +I Sbjct: 576 ----KFANNGTTMLPPPAISKPKELWTGSQLISFVFPYTLMYQRGSISGITSYDTKDLLI 631 Query: 583 VPKGLPYSIVNQALGKKAISKMLNTCYRILG-LKPTVIFADQIMYTGFAYAA-RSGASVG 640 + + ++++ + + + G K V F + + ++ S+G Sbjct: 632 QNGQILFGRLSKSTLGATAGAISDIIHHEHGGPKKAVEFLSDVQRVVNQWLLYKNSFSIG 691 Query: 641 IDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDN 700 D V E+ H + E + + L + + K + A +S +M Sbjct: 692 ASDCVTNEQSHNEVVE---CIKSAVNNSKMILTSKVPKSLKEM-AEGATTRILSDVIMKT 747 Query: 701 LQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIET--- 757 + NSI +G++GS I Q+ G G I+ Sbjct: 748 ATI--------IKNNAPPDNSIITCVTAGSKGSPLNIAQVCGQVGQQIVGGARILNGTSG 799 Query: 758 ------------------PITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRR 799 I +F GL ++F S R+GL DTA+KTANSGY+ R Sbjct: 800 RTLPCFKHGEHATVNANGYIQNSFMLGLQPTEFFFSAMSGREGLVDTAVKTANSGYIQRC 859 Query: 800 LVDV--------------AQDLVVTE------DDCGTHEGIMMTPVIEGGDVKE----PL 835 LV AQ +VV D C I + P++ + + PL Sbjct: 860 LVKASEDNMCNYDGTIRNAQGMVVQFKYADNFDPCKVER-IKVEPLLMTPEEIKRNAGPL 918 Query: 836 RDRVLG--RVTAEDVLKPGTAD----ILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCD 889 V+ R A+ VL +L+P N + + + + S+++ Sbjct: 919 EYDVIMSLRENAQKVLSQSNKPLMDVVLLPINISRMFESATWNNDVPHEFDE-ESLLTAV 977 Query: 890 T--------DFGVCA-------------------------HCYGRDLARGHIINKGEAIG 916 + VC C + ++ G+A+G Sbjct: 978 SEVVHEIVKKHPVCKYVVPLYIQWCMRIGNIPEHLNVKAFLCEVKHRCLSSVVAGGDAVG 1037 Query: 917 VIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVIT 976 AA SIGEP TQ+T+ +FH G + +K V+ S +L Sbjct: 1038 NTAALSIGEPSTQMTLNSFHTAGTGHAGVTMG-----------IPRLKEVMGYSKQLRTP 1086 Query: 977 SRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQV--AGGETVANWDPHTMPVITEVSGF 1034 E S K+ + + V + + P Sbjct: 1087 QTTLEFSDKTPEELKAISAKLTRLTLSHVTENMNVVLEPSDVIDESYPED---------- 1136 Query: 1035 VRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTD 1094 V+F +D +D + VL+ + +L PA + I TD Sbjct: 1137 VKFALKMDTYFAPDLSDPS---MHVGVLELNKHLLNDYNLTPAKIAPIIKSLACNIIDTD 1193 Query: 1095 MPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPA 1154 + Y + ++ V+I D P+ + G K Sbjct: 1194 VHVSY----SEVNTIDWWVRIRILDVSKHFPEVISNKEMCERGTVLRFVKLLCHEIKLGG 1249 Query: 1155 IL-AEISGIVSFGKETKGKRRL--VITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVIS 1211 E S + S + K + VI IP V + Sbjct: 1250 FNGIEASAVDSIERWNGEKNEIVNVIQTRSTILHRAYAIPGVDWTKVMTND--------- 1300 Query: 1212 DGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGS 1271 H+++ G+ A I NE+ G I+ +HIE+ M + + Sbjct: 1301 -----IHNVVNTLGIEAALTMIFNELHSTLTADGSYIDPRHIELTASTMTLRGYV----- 1350 Query: 1272 SDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLA--TESFISAASFQETT 1329 + + + L ++ +SF+ET+ Sbjct: 1351 -----------------------------------MPLNRHGLNNIKTGPLTRSSFEETS 1375 Query: 1330 RVLTEAAVAGKRDELRG-LKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQVTAED 1388 VL +AA+ + +++ G + ++++G+L GTG R+ + + ++ Sbjct: 1376 EVLKDAAIFAESEDVSGSVSASIMMGQLSAIGTG--RFDVRIPKPESISVKETSRIIKTK 1433 Query: 1389 ASASL 1393 +A+L Sbjct: 1434 GTATL 1438 >UniRef50_Q8LLJ6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ochromonas danica RepID=Q8LLJ6_OCHDN Length = 1064 Score = 492 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 185/874 (21%), Positives = 314/874 (35%), Gaps = 166/874 (18%) Query: 97 VRRERMGHIELASPTAHIWF-------LKSLPSRIGLLL--DMPLRDIERVLYFESYVVI 147 GHIEL H F L+ + LL + +D E + + Sbjct: 1 ECPGHFGHIELHRAVFHCGFIDEVVRILRCVCFHCSRLLLDEKIPKDREVMQITDPETRF 60 Query: 148 EGGMTNLERQQILTEEQYLDALEEFGDEFDAK-----------MGAEA------------ 184 R + E + + F DE + GA+A Sbjct: 61 RKIHDRCNRTMVKCEVADSEQMTRFLDEANPDASEARNFIDDIFGADAFQSTQASSSSHN 120 Query: 185 --------IQALLKSMDLEQECEQLRE------------ELNETNSETKRKKLTKRIKLL 224 +Q K L E EL+ T + +K++ + Sbjct: 121 SKRPPCGNVQPKFKREGLTIRITFSSEDSDAPTLGPRQRELSATEAYEVLRKISDEDVEM 180 Query: 225 EAFVQSGNKPEWMILTVLPVLPPDLRPLVP-------------LDGGRFATSDLNDLYRR 271 F ++P+WM +V +G + DL Sbjct: 181 LGFNPKYSRPDWM--------------VVTVLPVPPPHVRPTVTEGDVQSQDDLTYQLTN 226 Query: 272 VINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRA-ITGSNKRPLKSLADM 330 ++ N LK + +I++ ++ LQ V+AL DN R +T RPLK++ Sbjct: 227 IVKTNLILKDTIMKGGSKLIIQEYEKALQAHVNALFDNERDDNPRVTQKTGRPLKTVRQR 286 Query: 331 IKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFI-YGKLELRG 389 +KGK+GR R NL+GKRVD+S R+VIT P L + Q G+P+ +L + + Sbjct: 287 LKGKEGRLRGNLMGKRVDFSARTVITADPNLSIDQVGVPRLYCFDLDCSCNSDNHINIDE 346 Query: 390 LATTI------KAAKKMVEREEAVV-----------------WDILDEVIREHPVLLNRA 426 L + + + R + V W + + + VL NR Sbjct: 347 LRDMVARGPLEWPGARYIVRADGVRIDLRKVRSSNDVQLEYGWTVERHLRDDDIVLFNRQ 406 Query: 427 PTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMS 486 P+LH++ +++ +L+ V YNADFDGD+M +HVP +L A+ +A+ LMM Sbjct: 407 PSLHKMSTMGHRAKVLDWSTFRLNLSVTTPYNADFDGDEMNLHVPQSLTARADAQELMMV 466 Query: 487 TNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHA 546 NI++P + ++ QD +LG+ MT+ V E ++ T G A Sbjct: 467 PRNIVTPQSNRNVMGIVQDALLGVTRMTKRDVFVDKEVVMNTM---VWLPTWDGNIPAPA 523 Query: 547 RVKVRITEYEKDANGELVAKTSLK--------DTTVGRAILW-----MIVPKGLPYSIVN 593 +K + K + K + + D V + +I L IV+ Sbjct: 524 ILKPKPLWTGKQLFSMICPKINYRGRSKNHVEDKNVTDPFNYLDSEVLIHSGNLLQGIVD 583 Query: 594 QALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEI 653 + + + +++ C+ G + T F +QI + + SVG+ D V Sbjct: 584 KNIVGASGGSIVHICWLSKGWEETRDFMNQIQAVVNYWMVNTSYSVGVSDTVADATTINA 643 Query: 654 IS----EAEAEVAEIQEQFQSGLVT-------AGERYNKVIDIWAAANDRVSKAMMDNLQ 702 I EA+ +V I + Q G + + ++ A V KA +L+ Sbjct: 644 IQSTLNEAKEKVKAIMTKAQEGSLKMMPGKPLMESFEMXINEVLNDARSTVGKAAQRSLK 703 Query: 703 TETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSI-------- 754 N+I +G++GS I Q+ G I Sbjct: 704 ER---------------NAIKGTVMAGSKGSELNISQIIACVGQQNVQGKRIAYGFNQRT 748 Query: 755 ------------IETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVD 802 + ++ GL+ ++F G R+G DTA+KTA +GY+ RRLV Sbjct: 749 LPHFAKDDLGMESRGFVENSYLRGLSPQEFFFHAMGGREGCIDTAVKTAETGYIQRRLVK 808 Query: 803 VAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLR 836 + ++ D + + + G D + R Sbjct: 809 AMETVMAQYDTTLRNSRGCVIQFLYGEDGMDAQR 842 Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 16/28 (57%), Positives = 21/28 (75%) Query: 904 ARGHIINKGEAIGVIAAQSIGEPGTQLT 931 R +++ GE GV+AAQSIGEP TQ+T Sbjct: 1037 FRASVVHPGEMAGVLAAQSIGEPATQMT 1064 >UniRef50_P15398 DNA-directed RNA polymerase I subunit rpa1 n=2 Tax=Schizosaccharomyces RepID=RPA1_SCHPO Length = 1689 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 168/922 (18%), Positives = 341/922 (36%), Gaps = 189/922 (20%) Query: 207 ETNSETKRKKLTKRIKLLEAFVQSGNKP---EWMILTVLPVLPPDLRPLVPLDGGRFATS 263 E + +R + + + L + KP + L + V P RP + G + Sbjct: 327 EVRNHLRRLFVKENVVLSRLYAHKRGKPASADMFFLQNIAVPPTRFRPASKM-GDEVHEN 385 Query: 264 DLNDLYRRVINRNNRLKRLLDLAA----PDIIVRNEKR------------MLQEAVDALL 307 N+L R++ + ++ L + PD E+R LQ V++L+ Sbjct: 386 IQNELLTRILQSSIQIASLSKDSTVEVNPDEKEGLERRSRAFELLINAFVQLQHDVNSLI 445 Query: 308 DNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCG 367 D+ R + S P + +++ K+G FR++++GKRV+Y+ RSVI+ P + ++ G Sbjct: 446 DSNRNPSSGGQSRTVP-PGIKQILEKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIG 504 Query: 368 LPKKMALELFKPFIYGKLELRGLATTI------KAAKKMVEREEAVV------------- 408 +P A +L P + + ++ E+ + Sbjct: 505 VPPVFATKLTYPEPVTLYNFNEMRNAVINGPHKWPGASHIQNEDGTLISLMPLTIEQRTA 564 Query: 409 --------------------------WDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLI 442 + V ++LNR PTLH+ + A + ++ Sbjct: 565 LANQLLTPQSNLISSPYSYSRLINTNKKVYRHVRNGDMLILNRQPTLHKPSMMAHKARIL 624 Query: 443 EG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIV 501 G K I++H C +YNADFDGD+M +H P + A+ EA+ + + + L P +G+P+ Sbjct: 625 PGEKTIRMHYANCNSYNADFDGDEMNMHFPQSTNARSEAQFIANTDSQYLVPTSGDPLRG 684 Query: 502 PSQDVV-LGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVK---VRITEYEK 557 QD V +G++ +D + E L + + ++ R+K I Sbjct: 685 LIQDHVVMGVWLTCKDTFYTRDEYQQLLF-----QALKPDETGMYGRIKTLPPAIQRPGI 739 Query: 558 DANGELVAKTSLKDTTVGRAIL---------------------WMIVPKG-LPYSIVNQA 595 G+ + + L + ++ G L I++++ Sbjct: 740 YWTGKQIISSVLLNLKPSDRPGLNLKSKAKVPGKYWSPDSEEGSVLFDDGELLCGILDKS 799 Query: 596 LGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEK----KH 651 + ++++ + + G + AYA G + +DD+ + E+ + Sbjct: 800 SFGASAFGLVHSVHELYGPDIAGRLLSVLSRLFTAYAQMRGFTCRMDDLRLDEQGDNWRR 859 Query: 652 EIISEAEAEVAEIQEQF-----------QSGLVTAGERYNKVIDIWAAANDRVSKAMMDN 700 +++ ++ E ++ + + R ++ + AA + + Sbjct: 860 QLLENGKSFGLEAASEYVGLSTDSPIALLNANLEEVYRDDEKLQGLDAAMKGKMNGLTSS 919 Query: 701 LQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM------------- 747 + + + + + +N + M SGA+GS + Q++ + G Sbjct: 920 IINKCIPD---GLLTKFPYNHMQTMTVSGAKGSNVNVSQISCLLGQQELEGRRVPLMVSG 976 Query: 748 -AKPDGSIIET------PITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRL 800 + P ET I + F G+ +Y+ R+GL DTA+KT+ SGYL R L Sbjct: 977 KSLPSFVPYETSAKSGGFIASRFLTGIAPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCL 1036 Query: 801 VDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDR--------------VLGRVTAE 846 + + L V D + G D + + + ++ + + Sbjct: 1037 MKHLEGLCVQYDHTVRDSDGSIVQFHYGEDSLDVTKQKHLTQFEFSAKNYKSLIQKYKVK 1096 Query: 847 DVL-----------------KPGTADILVPRN-----------------TLLHEQWCDLL 872 VL KP D ++ + ++ D L Sbjct: 1097 SVLSAVDSETASSYAKKALKKPYKYDPVLDKYPPSRYLGSVSEKFQRAVDEYTQKNPDKL 1156 Query: 873 EENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTM 932 + ++ S+++ + Y + +++ GE++GV+A+QSIGEP TQ+T+ Sbjct: 1157 IASKKESKLDDSLLNESKFKALMQLRY-----QQSLVDPGESVGVLASQSIGEPSTQMTL 1211 Query: 933 RTFHIGGAASRAAAESSIQVKN 954 TFH G ++ +++ Sbjct: 1212 NTFHFAGFGAKNVTLGIPRLRE 1233 Score = 68.6 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 48/214 (22%), Positives = 76/214 (35%), Gaps = 53/214 (24%) Query: 1153 PAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE--GERVERGDVI 1210 ++ EI GI + P D ++I + L + D+ Sbjct: 1515 ETVIHEIPGITRCFSKP---------PDSALDTVPKVITEGVNLKAIWEFYNEISMNDIY 1565 Query: 1211 SDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAG 1270 ++ ILR+ GV A IV+EV V+ + G+ ++ +H+ +I M G Sbjct: 1566 TN---DIAAILRIYGVEAARNAIVHEVSSVFGVYGIAVDPRHLSLIADYMTF-----EGG 1617 Query: 1271 SSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTR 1330 F NR +GI S + SF+ T Sbjct: 1618 YKAF--------------NR----------------MGIE----YNTSPFAKMSFETTCH 1643 Query: 1331 VLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 LTEAA+ G D+L ++VGR+ GTG Sbjct: 1644 FLTEAALRGDVDDLSNPSSRLVVGRVGNFGTGSF 1677 Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 49/141 (34%), Gaps = 23/141 (16%) Query: 14 TEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCG 73 + E ++K + D + S ++ P ++ P GL Y+ G Sbjct: 8 SSEIKSVKFGIYDVDDVEKISVKQIVNPVLLDNLNH-PTNGGL-----------YDLALG 55 Query: 74 KYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRI-GLLLDMPL 132 Y + +C C ++ + GHI L P H F + + + L Sbjct: 56 PYL----KNSVCATCHLD---ERYCPGHFGHIVLPIPAYHPLFFSQMYNLLRSTCLYCHH 108 Query: 133 RDIERV---LYFESYVVIEGG 150 + +V L+F +++ G Sbjct: 109 FKLSKVKVHLFFCRLKLLDYG 129 >UniRef50_C1EFA8 DNA-directed RNA polymerase (Fragment) n=2 Tax=Micromonas RepID=C1EFA8_9CHLO Length = 1616 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 179/848 (21%), Positives = 283/848 (33%), Gaps = 134/848 (15%) Query: 228 VQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAA 287 + + + P + + V P LRP + F N +I N L L Sbjct: 323 IVNRSDPARFFMQTVLVTPCKLRPPSRMGDMMF-EHPQNTHLNAIIQANLTLAELFRKPP 381 Query: 288 PDIIVRN--------EKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFR 339 LQ V+ L+D+ R G G + ++ KQG FR Sbjct: 382 TVPEPPEVRAQRAVRAWLTLQSGVNKLIDSSREGGEAGGP------GIRQQLEKKQGLFR 435 Query: 340 QNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLE---LRGLATT--- 393 N++GKRV+Y+ RSVI PYLR + G+P A +L P + +R L Sbjct: 436 MNMMGKRVNYAARSVIMPDPYLRTSEIGVPPVFAKKLTFPEHVTEHNVDLMRKLVENGPE 495 Query: 394 IKAAKKMVEREEAVV--------------------------------WDILDEVIREHPV 421 I +E E V + + + Sbjct: 496 IHPGANAIEDERGRVIHLDRFTAEKRAAIAKTLLAAPAPVSGSRPLAKKVYRHLRDGDVL 555 Query: 422 LLNRAPTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480 L+NR PTLH+ GI A ++ G + I++H C YNADFDGD+M +H P A+ EA Sbjct: 556 LVNRQPTLHKPGIMAHTAKVLPGQRTIRMHYANCKTYNADFDGDEMNLHFPQDHLARAEA 615 Query: 481 RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGM------VLTGPKEAE 534 ++ + P +G P+ QD V+ +T+ E M L + + Sbjct: 616 YEIVRADQQYTVPTDGSPLRGLIQDHVVAGVLLTKRDTFLDREEMRQALYSALVDYADED 675 Query: 535 RLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWM----IVPKGL--- 587 + S I + G+ V L T GR + M VP Sbjct: 676 KGGGSARGHSITVPPPAIVHPRELWTGKQVISAVLDHITHGRPDMTMSHGCKVPANYWGG 735 Query: 588 -----------PYSIVNQALGKKAIS--KMLNTCYRILGLKPTVIFADQIMYTGFAYAAR 634 + + K +++ + G + + + Sbjct: 736 ENSGEGEFILRKNYVCCGIVDKNTFGNKGLVHAVAELHGRVLAGDLLSVLSRLLTVWLQK 795 Query: 635 SGASVGIDDMVIPEKKH------------------EIISEAEAEVAEIQEQFQ-SGLVTA 675 G + G+DD+++ + +EA+ V + Q Q + + Sbjct: 796 WGMTCGLDDLILTPEAEVGRAEELAKAAAACRSAAATFAEADENVPDAALQQQIAARLAE 855 Query: 676 GERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAA 735 E ++D+ R S A+ +K N + +M SGA+GS Sbjct: 856 REGAEAILDM------RSSGALNKITSAAVTKCLPHGTKKPFPKNCLSLMTQSGAKGSMV 909 Query: 736 QIRQLAGMRGLM--------------AKPDGSIIE------TPITANFREGLNVLQYFIS 775 Q+A G P + I F GL +YF Sbjct: 910 NFSQIAACLGQQELEGRRVPRMISGKTLPCFQPFDLSQRAGGYIEDRFFSGLRPQEYFFH 969 Query: 776 THGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPL 835 R+GL DTA+KTA SGYL R ++ + L V D + G D + Sbjct: 970 CMAGREGLVDTAVKTARSGYLQRCMIKNLETLRVHYDHTVRDCDGSVVQFQYGEDGADVT 1029 Query: 836 RDRV--LGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSV----VSCD 889 + + A++ + + SV V R S Sbjct: 1030 KSSYASDFQFLADNAELVKANLREAEAGRAEGKGASIKADLKSVKGVVERKPPEKKQSLV 1089 Query: 890 TDFGVCAHCYGRDLAR---GHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAA 946 GV + R + + GEA+G IA QS+GEP TQ+T+ TFH G Sbjct: 1090 AQAGVTREEFKRLMNYRYLNQLAAPGEAVGCIAGQSVGEPSTQMTLNTFHFAGRGEANVT 1149 Query: 947 ESSIQVKN 954 +++ Sbjct: 1150 LGIPRLRE 1157 Score = 57.4 bits (137), Expect = 4e-06, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 56/150 (37%), Gaps = 41/150 (27%) Query: 1216 APHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFL 1275 + +L+ GV A + +V EV++V+ + G+ ++ +H+ +I M+++ Sbjct: 1505 DVYAMLQTYGVEAARQTLVQEVRNVFGVYGIGVDARHLTLIADFMMQQG----------- 1553 Query: 1276 EGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATE-SFISAASFQETTRVLTE 1334 Y ++A + T S S++ L + Sbjct: 1554 -------------------------NYRP----CSRAGIETSPSPFLKMSYETAAAFLVD 1584 Query: 1335 AAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 A + G D L +++GR+ GTG Sbjct: 1585 ATMKGAEDTLESPSSRIVMGRVPDLGTGSF 1614 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 53/175 (30%), Gaps = 29/175 (16%) Query: 17 FDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYK 76 + + + R S + P + P +DGL+ + GP+ Sbjct: 1 IVSTSFSFYDAEEARRISVKRISNPVLFDALN-NPVQDGLYDPAL-GPI----------- 47 Query: 77 RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIE 136 + C C + GHIELA P + ++ + + Sbjct: 48 ---DKKGSCATCRLSAMHCP---GHFGHIELAVPVYNPLTFGTVVRLLRGMC-------- 93 Query: 137 RVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKS 191 L+ + + + R+ L L+A E +K EAI L + Sbjct: 94 --LHCHRFKMGADRVAAYSRKMQLIRAGDLNAAAEISTVGVSKQVREAIAELEED 146 >UniRef50_Q7T6X5 DNA-directed RNA polymerase subunit 1 n=1 Tax=Acanthamoeba polyphaga mimivirus RepID=RPO1_MIMIV Length = 1495 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 193/970 (19%), Positives = 357/970 (36%), Gaps = 144/970 (14%) Query: 14 TEEFDAIKIALASPDMIRSWSF----GEVKKPETINYRTFKPERDGLFCARIFGPVKDYE 69 E + I+ + S + I S + + ET N +P + G+ R+ E Sbjct: 15 IETVERIEFCINSNESIIRHSAIVDPNGITEAETFNSNNNEPVQGGVIDKRLGVTESHLE 74 Query: 70 CLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLD 129 C CG + GHI+ P H+ +L + +L Sbjct: 75 ---------------CSTCGETALRCP---GHFGHIKFVEPVFHMGYL----IYLKHILS 112 Query: 130 MPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEA--IQA 187 ++L +++ I + N + +Q E + + + + G A I Sbjct: 113 CICIRCNKLLVYKNEKEIAALIKNKQGKQRFAEIRSICKKVTHCQKENYGCGTPAHKISI 172 Query: 188 LLKSMDLEQECEQLR----------------EELNETNSETKRKKLTKRIKLLEAFVQSG 231 ++ ++ E ++ + L K ++ ++ F + Sbjct: 173 DKRNGNIFLLAEPVKRTDEYDETGETRKRPQQILTPQLCYDILKSVSDEDCIIMGFDPAK 232 Query: 232 NKPEWMILTVLPVLPPDLRPLVPLD--GGRFATSDLNDLYRRVINRNNRLKRLLDLAA-- 287 ++PE MI+ PV P +RP + + DL +I N LK + Sbjct: 233 SRPEDMIILNFPVPPVQVRPSIRAEILSSPTMDDDLTHKLIDIIKSNENLKNTKGDGSLI 292 Query: 288 PDIIVRNEKRMLQEAVDALLDNGRRGRAITGS-NKRPLKSLADMIKGKQGRFRQNLLGKR 346 + ++ +LQ V N G A + NK+ KS+++ ++GK+GR R NL+GKR Sbjct: 293 KYTSINDDFMLLQLHVATFFANDMAGLARSQQKNKKVTKSMSERLRGKEGRIRGNLMGKR 352 Query: 347 VDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEA 406 VD S R+VIT P + L++ G+P +A L I + + L +K K++ Sbjct: 353 VDMSARTVITSDPNIALNEVGVPLIIAKNLTFDEIVTEHNIEYLTQLVKNGKRVYPGANF 412 Query: 407 VVWDILD-----------------------------EVIREHPVLLNRAPTLHRLGIQAF 437 V+ ++D ++I V+ NR P+LH+L + Sbjct: 413 VIKHVIDAEGNESGHIYHLKYVDKPISLKPGDIVKRQLIDGDIVIFNRQPSLHKLSMMGH 472 Query: 438 EPVLIEGK---AIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPA 494 + +I +++ V YNADFDGD+M +HVP +++ E + ++ +SPA Sbjct: 473 KCHVIPDNNLLTFRVNVSVTDPYNADFDGDEMNLHVPQSIQTATEILLIANASRRFVSPA 532 Query: 495 NGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITE 554 I QD ++G Y T + + S L S ++ I + Sbjct: 533 TSNIAIKAKQDTLMGSYVQTEPDMEIDWRDAM------------SILMSTSVKLDNDIPK 580 Query: 555 YEKDANGELVAKTSLKD--TTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRIL 612 Y ++ +G+ + + + R K + + LGK IS +L + Sbjct: 581 Y-QNVSGKFLYSQIIPEGLNITKRKNDKEFQLKIKNGELTDGTLGKSEISSILQRIWFQY 639 Query: 613 GLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEK----KHEIISEAEAEVAEIQEQF 668 G K T F D + R G +V I D VI EK +++I E ++ Sbjct: 640 GSKETQEFIDDAQRMILQFLMRYGYTVSIKDTVIGEKVNQYIYDLIETKRKETLAFITEY 699 Query: 669 QSG--LVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMA 726 + ++T K+ + + D + +M N + I++ Sbjct: 700 DNDPYVMTKDAFEIKLQENLKSVQDEIKNTVMRNFDKNS---------------GIFIAI 744 Query: 727 DSGARGSAAQIRQLAGMRGLM--------------------AKPDGSIIETPITANFREG 766 SG+ G Q+AG G + D + +F EG Sbjct: 745 SSGSSGEPMNAGQIAGCIGQVIVEGKRIQIRFNGRTLPMFPKFDDSAFSRGFCRNSFIEG 804 Query: 767 LNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVI 826 L ++F R+G+ +TA+KTA++GY+ R+LV + +D+ D + + + Sbjct: 805 LGPFEFFFQVMAGREGIINTAIKTADTGYIQRKLVKMLEDIKQEYDGTVRNANGKLISCV 864 Query: 827 EGGDVK--EPLRDRVLGRVTAEDVLKPGTADILVPRNT---LLHEQWCDLLEENSVDAVK 881 G + E D+ + ++A D D + + L+ D ++ Sbjct: 865 YGDNGINTENQVDQKIDLISAND--NKVRNDYVYTEDEIKYLIKNHKTDKRYTTDLNNSL 922 Query: 882 VRSVVSCDTD 891 R ++S Sbjct: 923 YRKLISMRDQ 932 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 80/490 (16%), Positives = 158/490 (32%), Gaps = 76/490 (15%) Query: 909 INKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVN 968 + GE +G +AAQSIGEP TQ +++FH G + + ++VK L K++ Sbjct: 1058 VEGGEMVGFVAAQSIGEPVTQTNLKSFHKSGTG-KTVSGGLVRVKEL----LGISKNIKT 1112 Query: 969 SSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVI 1028 ++++ + K+ + Y L + V + + + +P + + Sbjct: 1113 PITEIILEEKYKNDKITASRIASYLKY-----TTLR----DVVEKADVIYDPEPFSKDGL 1163 Query: 1029 TEVSGFVRFTDMIDGQT---ITRQTDELTGLSSLVVLDSAERTAGGKDLRPAL-KIVDAQ 1084 + G D G+T + L ER +++ + + + Sbjct: 1164 MKKDGVDNIFDQEQGKTGCQTDIKNLPWVLRIMLSKEKMIERNINMLEIKTSFCRNWGTR 1223 Query: 1085 GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL 1144 D + AIV D Q+ + + + ++ + + Sbjct: 1224 NEDKTSKKEFNKVIDKITQCAIVTNYDNSQV----PIVHVRFD-ANNYNLNTLIQFQEMV 1278 Query: 1145 FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV 1204 + K + + E + I+ V+ ++ + +N+ E ++ Sbjct: 1279 INTYKIKGISNITESNNIIEESYVDFDDEGNVV-------KKKQYVIIAEGINLSEMSQI 1331 Query: 1205 ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 1264 D++ I + GV A + E G N +HIE++ + Sbjct: 1332 NGIDLLRTKCNDIVTIYEMYGVEAARTAFIKEFTAAIESSGGFSNYQHIEILADAITH-- 1389 Query: 1265 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLAT--ESFISA 1322 L+ + + S Sbjct: 1390 --------------------------------------MGGLIPVNRHGANKLDTDPFSR 1411 Query: 1323 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA----YHQDRMRRRAAGEA 1378 ASF++T L AAV G+ D +R + ++VG LI GTG H+ + E Sbjct: 1412 ASFEKTVEQLLAAAVFGESDHMRSVSARIMVGALINGGTGCFDLLLDHKKIQQSLVESEE 1471 Query: 1379 PAAPQVTAED 1388 AP V + Sbjct: 1472 VVAPVVPIKK 1481 >UniRef50_Q9SVY0 DNA-directed RNA polymerase n=2 Tax=rosids RepID=Q9SVY0_ARATH Length = 1670 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 203/1062 (19%), Positives = 374/1062 (35%), Gaps = 179/1062 (16%) Query: 195 EQECEQLREELNETNSETKRKKLTKRIKLLEAFV----QSGNKP---EWMILTVLPVLPP 247 E E + +L + K L + +F+ QSG++ L + V P Sbjct: 292 EFEEHNSKRDLLPSEVRNILKHLWQNEHEFCSFIGDLWQSGSEKIDYSMFFLESVLVPPT 351 Query: 248 DLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALL 307 RP G +VI NN L V R LQE+V+ L Sbjct: 352 KFRPP-TTGGDSVMEHPQTVGLNKVIESNNILGNACTNKLDQSKVIFRWRNLQESVNVLF 410 Query: 308 DNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCG 367 D + T ++R + +++ K+G FRQ ++GKRV+++ RSVI+ PY+ ++ G Sbjct: 411 D----SKTATVQSQRDSSGICQLLEKKEGLFRQKMMGKRVNHACRSVISPDPYIAVNDIG 466 Query: 368 LPKKMALELFKPFIYGKLELRGLATTIKAAKKMV-------------------EREEAVV 408 +P AL+L P + L I + + A+ Sbjct: 467 IPPCFALKLTYPERVTPWNVEKLREAIINGPDIHPGATHYSDKSSTMKLPSTEKARRAIA 526 Query: 409 WDIL-----------------------DEVIREHPVLLNRAPTLHRLGIQAFEPVLIEG- 444 +L + VL+NR PTLH+ + A + +++G Sbjct: 527 RKLLSSRGATTELGKTCDINFEGKTVHRHMRDGDIVLVNRQPTLHKPSLMAHKVRVLKGE 586 Query: 445 KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQ 504 K ++LH C+ YNADFDGD+M VH P ++ EA ++ + N P+NGEP+ Q Sbjct: 587 KTLRLHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYARPSNGEPLRALIQ 646 Query: 505 DVVLGLYYMTRDCVNAKGEG----MVLTGPKEAERLYRSGLASLHARV----------KV 550 D ++ +T+ + + +G + SG + V Sbjct: 647 DHIVSSVLLTKRDTFLDKDHFNQLLFSSGVTDMVLSTFSGRSGKKVMVSASDAELLTVTP 706 Query: 551 RITEYEKDANGELVAKTSLKDTTVG----------------------------------- 575 I + G+ V L T G Sbjct: 707 AILKPVPLWTGKQVITAVLNQITKGHPPFTVEKATKLPVDFFKCRSREVKPNSGDLTKKK 766 Query: 576 ------RAILWMIVPKGLPYSIVNQALGKKAI--SKMLNTCYRILGLKPTVIFADQIMYT 627 + L V + K +++T + + G Sbjct: 767 EIDESWKQNLNEDKLHIRKNEFVCGVIDKAQFADYGLVHTVHELYGSNAAGNLLSVFSRL 826 Query: 628 GFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGL--------VTAGERY 679 + G + G+DD++I + E ++ E + E+ + + Sbjct: 827 FTVFLQTHGFTCGVDDLIILKDMDEERTKQLQECENVGERVLRKTFGIDVDVQIDPQDMR 886 Query: 680 NKVIDIWAA----ANDRVSKAMMDNL---QTETVINRDGQEE--KQVSFNSIYMMADSGA 730 +++ I A + +++++ L ++ V+N + K N I +M SGA Sbjct: 887 SRIERILYEDGESALASLDRSIVNYLNQCSSKGVMNDLLSDGLLKTPGRNCISLMTISGA 946 Query: 731 RGSAAQIRQLAGMRGLM--------AKPDGSIIE------------TPITANFREGLNVL 770 +GS +Q++ G G + I+ F GL Sbjct: 947 KGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFISDRFLSGLRPQ 1006 Query: 771 QYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGD 830 +Y+ R+GL DTA+KT+ SGYL R L+ + L V D + G D Sbjct: 1007 EYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVNYDCTVRDADGSIIQFQYGED 1066 Query: 831 VKEPLRDRVLGR-----VTAEDVLKPGTADILVPRNTLLHEQWCDLLE--ENSVDAVKVR 883 + R + + + + VL+ + D+L ++ + + L + E V+A+ + Sbjct: 1067 GVDVHRSSFIEKFKELTINQDMVLQKCSEDMLSGASSYISDLPISLKKGAEKFVEAMPMN 1126 Query: 884 SVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASR 943 ++ + + GE +GV+AAQS+GEP TQ+T+ TFH+ G Sbjct: 1127 ERIASKFVRQEELLKLVKSKFFASLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEM 1186 Query: 944 AAAESSIQVKNKGSIKLSNVKSVV---------NSSGKLVITSRNTELKLIDEFGRTKES 994 +++ +N+K+ + IT R ++ + + ++ E Sbjct: 1187 NVTLGIPRLQEILMTAAANIKTPIMTCPLLKGKTKEDANDITDRLRKIT-VADIIKSMEL 1245 Query: 995 YKVPYGAVLAKGDGEQ--VAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDE 1052 VPY + E + + + P P T+++ + + + + + D Sbjct: 1246 SVVPY----TVYENEVCSIHK-LKINLYKPEHYPKHTDIT-EEDWEETMRAVFLRKLEDA 1299 Query: 1053 LTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTD 1094 + + + +L R G + + ND + G Sbjct: 1300 I--ETHMKMLH---RIRGIHNDVTGPIAGNETDNDDSVSGKQ 1336 Score = 63.2 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 57/158 (36%), Gaps = 38/158 (24%) Query: 1214 PEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD 1273 + HD+L + GV A I+ E+ V++ G+ ++ +H+ +I M Sbjct: 1550 SNSIHDMLNIFGVEAARETIIREINHVFKSYGISVSIRHLNLIADYMT------------ 1597 Query: 1274 FLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLT 1333 + G + + GI + S +F+ T+ + Sbjct: 1598 -------------------FSGGYRPMS---RMGGIA----ESTSPFCRMTFETATKFIV 1631 Query: 1334 EAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMR 1371 +AA G++D L + +G +GTG R+ Sbjct: 1632 QAATYGEKDTLETPSARICLGLPALSGTGCFDLMQRVE 1669 Score = 56.6 bits (135), Expect = 7e-06, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 19/98 (19%) Query: 17 FDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYK 76 ++++ + + +R SF +V P ++ P GL+ ++ GP D + Sbjct: 27 VESVRFSFMTEQDVRKHSFLKVTSP-ILHDNVGNPFPGGLYDLKL-GPKDDKQA------ 78 Query: 77 RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHI 114 C CG GHIEL P H Sbjct: 79 --------CNSCGQLKLACP---GHCGHIELVFPIYHP 105 >UniRef50_P10964 DNA-directed RNA polymerase I subunit RPA1 n=24 Tax=Saccharomycetales RepID=RPA1_YEAST Length = 1664 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 233/1341 (17%), Positives = 475/1341 (35%), Gaps = 250/1341 (18%) Query: 235 EWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL---LDLAAPDII 291 + + VL V P R L S N L +V+ + ++ L L D + Sbjct: 353 DSFFMDVLVVPPTRFRLPSKLGEEVHENSQ-NQLLSKVLTTSLLIRDLNDDLSKLQKDKV 411 Query: 292 VRNEKRML-----------QEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQ 340 ++R++ Q V+A +D+ + S K P+ + ++ K+G FR+ Sbjct: 412 SLEDRRVIFSRLMNAFVTIQNDVNAFIDSTKAQG--RTSGKVPIPGVKQALEKKEGLFRK 469 Query: 341 NLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKM 400 +++GKRV+Y+ RSVI+ P + ++ G+P A++L P + L + Sbjct: 470 HMMGKRVNYAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTAYNIAELRQAVINGPDK 529 Query: 401 ---------------------VEREEAVVWDIL----------------DEVIREHPVLL 423 VE+ +A+ +L + VL+ Sbjct: 530 WPGATQIQNEDGSLVSLIGMSVEQRKALANQLLTPSSNVSTHTLNKKVYRHIKNRDVVLM 589 Query: 424 NRAPTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARA 482 NR PTLH+ + + ++ K ++LH AYNADFDGD+M +H P A+ EA Sbjct: 590 NRQPTLHKASMMGHKVRVLPNEKTLRLHYANTGAYNADFDGDEMNMHFPQNENARAEALN 649 Query: 483 LMMSTNNILSPANGEPIIVPSQDVVL-GLYYMTRDCVNAKGEGMVLT----GPKEAERLY 537 L + + L+P +G P+ QD + G++ ++D + + P++ Sbjct: 650 LANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQQYIYGCIRPEDGHTTR 709 Query: 538 RSGLASLHARVKVRITEYEKD--------------ANGELVAKTSLKDTTVGRAIL-WMI 582 + K K L++K +K+ G+ L + Sbjct: 710 SKIVTLPPTIFKPYPLWTGKQIITTVLLNVTPPDMPGINLISKNKIKNEYWGKGSLENEV 769 Query: 583 VPKG--LPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVG 640 + K L I++++ + ++++ + + G + + Y + + G Sbjct: 770 LFKDGALLCGILDKSQYGASKYGIVHSLHEVYGPEVAAKVLSVLGRLFTNYITATAFTCG 829 Query: 641 IDDMVIPEK----KHEIIS-------EAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAA- 688 +DD+ + + + +I+ EA AEV + + + +R +++ Sbjct: 830 MDDLRLTAEGNKWRTDILKTSVDTGREAAAEVTNLDKDTPADDPELLKRLQEILRDNNKS 889 Query: 689 -ANDRVSKAMMDNLQTETVIN-RDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGL 746 D V+ + ++ + ++ V K+ NS+ MA SGA+GS + Q+ + G Sbjct: 890 GILDAVTSSKVNAITSQVVSKCVPDGTMKKFPCNSMQAMALSGAKGSNVNVSQIMCLLGQ 949 Query: 747 MAK--------------PDGSIIET------PITANFREGLNVLQYFISTHGARKGLADT 786 A P ET + F G+ +Y+ R+GL DT Sbjct: 950 QALEGRRVPVMVSGKTLPSFKPYETDAMAGGYVKGRFYSGIKPQEYYFHCMAGREGLIDT 1009 Query: 787 ALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDR-------- 838 A+KT+ SGYL R L + + V+ D+ + + GGD + ++ Sbjct: 1010 AVKTSRSGYLQRCLTKQLEGVHVSYDNSIRDADGTLVQFMYGGDAIDITKESHMTQFEFC 1069 Query: 839 ------VLGRVTAEDVL-------------------KPGTADILVPRNTLLHEQWCDLLE 873 +L + ++ K + + ++ Sbjct: 1070 LDNYYALLKKYNPSALIEHLDVESALKYSKKTLKYRKKHSKEPHYKQSVKYDPVLAKYNP 1129 Query: 874 ENSVDAV------KVRSVVS-----CDTDFGVCAHCYGRDLAR----GHIINKGEAIGVI 918 + +V K+ S + + GV + R L + +IN GEA+G+I Sbjct: 1130 AKYLGSVSENFQDKLESFLDKNSKLFKSSDGVNEKKF-RALMQLKYMRSLINPGEAVGII 1188 Query: 919 AAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSR 978 A+QS+GEP TQ+T+ TFH G + + + ++ +V ++ + T + Sbjct: 1189 ASQSVGEPSTQMTLNTFHFAGHGAANVT-----------LGIPRLREIVMTASAAIKTPQ 1237 Query: 979 NTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFT 1038 T D +++ VL ++V ET + +RF Sbjct: 1238 MTLPIWNDVSDEQADTFCKSISKVLLSEVIDKVIVTETTGTSNTAGGNAARSYVIHMRFF 1297 Query: 1039 DMID-GQTITRQTDELTGLSSLVVLD----------SAERTAGGKDL---RPALK----- 1079 D + + +EL + S + ++ G D+ P L+ Sbjct: 1298 DNNEYSEEYDVSKEELQNVISNQFIHLLEAAIVKEIKKQKRTTGPDIGVAVPRLQTDVAN 1357 Query: 1080 -------IVDAQGNDVLIPGTDMPAQYFLPGKAIVQL---------EDGVQISSGDTLAR 1123 + + + T Y P + ++ E+G+ Sbjct: 1358 SSSNSKRLEEDNDEEQSHKKTKQAVSYDEPDEDEIETMREAEKSSDEEGIDSDKESDSDS 1417 Query: 1124 IPQESGGTKDITGGLPRV-ADLFEARRPKEPAILAEISGIVSFGKETKGKR--------- 1173 ++ + I + ++ + +R ++ AI++ I + + + + Sbjct: 1418 EDEDVDMNEQINKSIVEANNNMNKVQRDRQSAIISHHRFITKYNFDDESGKWCEFKLELA 1477 Query: 1174 ----RLVITPVDGSDPYEEMIPKWRQL------NVFEGERVERGDVISDGPEAPHDILRL 1223 +L++ + + +I + + G+RV ++++G + Sbjct: 1478 ADTEKLLMVNIVEEICRKSIIRQIPHIDRCVHPEPENGKRV----LVTEG-VNFQAMWDQ 1532 Query: 1224 RGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYS 1283 V N+V V + GV+ I + + + I V + Sbjct: 1533 EAFIDVDGITSNDVAAVLKTYGVEAARNTIVNEINNVFSRYAIS------------VSFR 1580 Query: 1284 RVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDE 1343 + + + G A + + + S S++ T + LT+A + +R++ Sbjct: 1581 HLDLIADMMTRQGTYLAFNRQGM-------ETSTSSFMKMSYETTCQFLTKAVLDNEREQ 1633 Query: 1344 LRGLKENVIVGRLIPAGTGYA 1364 L ++VG+L GTG Sbjct: 1634 LDSPSARIVVGKLNNVGTGSF 1654 Score = 68.2 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 68/203 (33%), Gaps = 27/203 (13%) Query: 15 EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74 E ++ + + IR+ S ++ P ++ P GL+ + +++ Sbjct: 9 SEITSVDFGILTAKEIRNLSAKQITNPTVLD-NLGHPVSGGLYDLALGAFLRN------- 60 Query: 75 YKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRI-GLLLDMPLR 133 +C CG++ GHIEL P + F L + L Sbjct: 61 ---------LCSTCGLDEKFCP---GHQGHIELPVPCYNPLFFNQLYIYLRASCLFCHHF 108 Query: 134 DIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMD 193 ++ V + L + ++ E LD + EAI+ MD Sbjct: 109 RLKSVEVHRYACKLR-----LLQYGLIDESYKLDEITLGSLNSSMYTDDEAIEDNEDEMD 163 Query: 194 LEQECEQLREELNETNSETKRKK 216 E +Q ++ + +E K K+ Sbjct: 164 GEG-SKQSKDISSTLLNELKSKR 185 >UniRef50_A4SAV6 DNA-directed RNA polymerase n=2 Tax=Ostreococcus RepID=A4SAV6_OSTLU Length = 1663 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 186/889 (20%), Positives = 301/889 (33%), Gaps = 184/889 (20%) Query: 229 QSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAP 288 + + P + L V P RP + G N +I N L L Sbjct: 326 ERRSDPARFFIQTLLVAPSKFRPPSKM-GDMIFDHPQNTALTTIIQANLSLAELFRTPPT 384 Query: 289 DIIVRN--------EKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQ 340 LQ V+ L+D + + + ++ K+G FR Sbjct: 385 VPEPPEVRAGRAVRAWLALQSGVNRLIDATKADT----QEAKQAIGIRQQLEKKEGLFRM 440 Query: 341 NLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATT------I 394 N++GKRV+++ RSVI+ PYL + G+P A +L P + + + T I Sbjct: 441 NMMGKRVNFAARSVISPDPYLGTSEIGVPPVFAKKLTFPELVTPHNVDLMRTLVENGPEI 500 Query: 395 KAAKKMVEREEAVVWD-----------------------------------ILDEVIREH 419 +E E V + + Sbjct: 501 HPGANAIEDERGRVIHLDKFTAEKRAAIAKTLLATTAAGSADGPARPLAKTVYRHLRDGD 560 Query: 420 PVLLNRAPTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQL 478 +L+NR PTLH+ GI A ++ G + +++H C+ +NADFDGD++ +H P + Sbjct: 561 VMLVNRQPTLHKPGILAHTARVLPGQRVVRMHYSNCSTFNADFDGDEINLHFPQDHLGRA 620 Query: 479 EARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVLTGPKEAERLY 537 EA +M P +G+P+ QD + ++ RD + E +L Sbjct: 621 EAYEIMHGDRQFTVPTDGKPLRGLIQDHICSGLLLSMRDSFFDRSEFT---------QLL 671 Query: 538 RSGLASL----HARVKVRITEYEKD---ANGELVAKTSLKDTTVGRAILWMIVPKGLPYS 590 SGL H ++ V K G+ V L T GR L P +P + Sbjct: 672 YSGLVDYCGDEHGKIDVPAPALLKPKALWTGKQVIAAVLSHITRGRPPLTFSAPCKIPAT 731 Query: 591 IV------------------NQALGKKAISK--MLNTCYRILGLKPTVIFADQIMYTGFA 630 + + K K +++ + G Sbjct: 732 FFGGEDSGEDRLIIRRNYFCSGVVDKNMFGKYGLVHAVAELHGRSTAGALLSIFSRLFTN 791 Query: 631 YAARSGASVGIDDMVIP-----------EKKHEIISEAEAEVAEIQEQFQSGLVTAGERY 679 + + G + GIDD+++ K E+ A A+VAE + ++TA Sbjct: 792 FLQKHGFTCGIDDLILTADAEKDRVVELNKADEMCKTATADVAEASGKSDEEVMTAIAAK 851 Query: 680 NKVIDIWAAANDRVSKAMMDNLQTETVIN-RDGQEEKQVSFNSIYMMADSGARGSAAQIR 738 W A D + ++ + + TV +K S N + +M SGA+GS Sbjct: 852 LLENPEWGAQLDMKASGALNKVTSATVKKCLPFGTKKPFSKNCLSIMTISGAKGSLVNFS 911 Query: 739 QLAGMRGLMA--------KPDGSIIETP------------ITANFREGLNVLQYFISTHG 778 Q+A G P G + + I F GL+ +YF Sbjct: 912 QIAAALGQQELEGRRVPRMPSGKTLPSFEPFDISSRANGYIACRFFSGLDPAEYFFHCMA 971 Query: 779 ARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDR 838 R+GL DTA+KTA SGYL R LV + + V D + G D + R Sbjct: 972 GREGLVDTAVKTARSGYLQRCLVKNLESMRVHYDFTVRDSDGSIVQFQYGEDCVDVTRSG 1031 Query: 839 VLGRVTAEDVLKPGTADILVPRNT-------LLHEQWCDLLEENSVDAVKVRSVVSCDTD 891 L + ++++ N L+++ +LE C + Sbjct: 1032 YLEKFE----FLAENPELILLNNEAAISMLPKLNKKKVSVLETIGRKEEL---PRFCMEN 1084 Query: 892 F----GVCAHCYGRDLAR------------------------------------------ 905 F GV +G +L Sbjct: 1085 FGDQLGVLPEKFGDELKTFIDSRPKGYWAEEKGKKNESSLAAKSGLTAEEFAMLMNMRYL 1144 Query: 906 GHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKN 954 ++ GEA+GVIAAQS+GEP TQ+T+ TFH G +++ Sbjct: 1145 TYVAPPGEAVGVIAAQSVGEPSTQMTLNTFHFAGRGEANVTLGIPRLRE 1193 Score = 71.7 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 51/223 (22%), Positives = 90/223 (40%), Gaps = 43/223 (19%) Query: 1156 LAEISGIVSFGKETKG-KRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVI---S 1211 +A+ + + +ET G K+ V+ D DP + + G D+I S Sbjct: 1465 IAQEVAVKTIIRETPGIKQTFVVGKTDDEDPTGSQPLSIQTDGINFGAAWANSDLIEVNS 1524 Query: 1212 DGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGS 1271 + DI++ GV A +V+EVQ V+ + G+ ++ +H+ +I M ++ Sbjct: 1525 MKSNSVWDIMQTFGVEAGRSTLVSEVQAVFGVYGIGVDTRHLSLIGDFMTQQ-------- 1576 Query: 1272 SDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRV 1331 GE + NR GI K++ S S++ T Sbjct: 1577 -----GE------YRPCNRS----------------GIEKST----SPFLKMSYETATAF 1605 Query: 1332 LTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRA 1374 LT+A + G+ D+L ++VGR + GTG + + R A Sbjct: 1606 LTDATIRGETDDLSSPSSRIVVGRTVDLGTGSFSLKHDIVRAA 1648 Score = 49.7 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 37/131 (28%), Gaps = 23/131 (17%) Query: 15 EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74 +E + + + +R S + P + DGL+ + C+ K Sbjct: 22 KEIASASFSFYDAEDVRKISVKRITNPVLFD-GLNNAVADGLYDPALGPTDSKTTCVTCK 80 Query: 75 YKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRD 134 + G +C GH+EL P + ++ LL Sbjct: 81 FP-----GGMCA-------------GHFGHLELVVPVYNPLTFGTV----VRLLKTTCFH 118 Query: 135 IERVLYFESYV 145 + S V Sbjct: 119 CHKFRLHASRV 129 >UniRef50_B5VU95 DNA-directed RNA polymerase n=3 Tax=Cyanobacteria RepID=B5VU95_SPIMA Length = 1361 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 199/612 (32%), Positives = 311/612 (50%), Gaps = 71/612 (11%) Query: 593 NQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHE 652 N+ + K + K++ + G T AD++ GF YA R+G S+ +DD+ IP+ K + Sbjct: 10 NRVIDKGQLKKLMTWAFMNHGSAVTAQVADELKDLGFKYATRAGVSISVDDLQIPQSKKD 69 Query: 653 IISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQ 712 ++ +AE E+ + ++ G +T ER+ KVID W ++ + ++ N ++ Sbjct: 70 LLEDAEEEIRRTERRYTKGEITEVERFQKVIDTWNGTSEALKDEVVRNFRSTN------- 122 Query: 713 EEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQY 772 NS+YMMA SGARG+ +Q+RQL GMRGLMA P G II+ PI NFREGL V +Y Sbjct: 123 -----PLNSVYMMAFSGARGNISQVRQLVGMRGLMADPQGEIIDQPIKTNFREGLTVTEY 177 Query: 773 FISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVK 832 IS++GARKGL DTAL+TA+SGYLTRRLVDV+QD+++ E DCGT GI + + +G + Sbjct: 178 IISSYGARKGLVDTALRTADSGYLTRRLVDVSQDVILREIDCGTERGITLGDMTDGDRIL 237 Query: 833 EPLRDRVLGRVTAEDVLKPGTADIL------VPRNTLLHEQWCDLLEENSVDAVKVRSVV 886 PL+DR++GRV EDV P T +I+ RN ++ + + V V VRS + Sbjct: 238 IPLKDRLMGRVLGEDVKNPETGEIISFGEIRAVRNQVVCDDLASAICNAGVKKVFVRSPL 297 Query: 887 SCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAA 946 +C+ + VC HCYG LA +++ GEAIG+IAAQSIGEPGTQLTMRTFH GG + AA Sbjct: 298 TCEANRSVCRHCYGWSLAHAEMVDLGEAIGIIAAQSIGEPGTQLTMRTFHTGGVFTAEAA 357 Query: 947 ESSIQVKNKGSIKLS---NVKSVVNSSGKL-VITSRNTELKLIDEFGRTKESYKVPYGAV 1002 ++ G++K +++ G + N L + + G + + G+ Sbjct: 358 -GFLRAPFDGTVKFPKTLRLRAFRTRHGDDSFLAESNGYLTVEGKDG--NKRINISQGST 414 Query: 1003 LAKGDGEQVAGGETVANW-----------DPHTMPVITEVSGFVRFTDMIDGQTITRQTD 1051 + DG+ V + + + T V T+++G V+F D++ + + RQ + Sbjct: 415 VVVHDGQAVNADQVLVEIMAGGRTARKTTEKATKDVATDLAGEVKFADVVPEEKLDRQGN 474 Query: 1052 ELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLED 1111 +I G ++ G Y LP A +++ Sbjct: 475 -------------------------MTRIAQRGGLLWVLAG----EVYNLPPGAEPVVKN 505 Query: 1112 GVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKG 1171 G ++ G LA+ ++ GG+ R+ D + P A G+++ + Sbjct: 506 GDRVEPGSVLAQTKLQTEH-----GGIVRITDDND-IDPATVATETLADGMITTSSGEEN 559 Query: 1172 KRRLVITPVDGS 1183 I + S Sbjct: 560 ALPREIEIITAS 571 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 150/444 (33%), Positives = 212/444 (47%), Gaps = 40/444 (9%) Query: 983 KLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMID 1042 L+ +S + L DG+++ G V + V G +++ Sbjct: 856 SLVIRRDIIADSTQGSTRTRLLVHDGQEIEPGAVVTRTEILGKDGGV-VGGIRSGAEILR 914 Query: 1043 GQTITRQTDELTGL---SSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTD----- 1094 I R TD +T + + ++ P +K+ G V I D Sbjct: 915 RCLIVRDTDMMTIQLPDGVTPTVKVGQLVVEDSEIAPGVKL-SQSGQVVAINQDDSETSI 973 Query: 1095 ---MPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPK 1151 + Y + A++ L DG + GD L + E T DI GLPR+ +L EAR+PK Sbjct: 974 VLRIGRPYRVSSGAVLHLSDGDLVQRGDNLVLLVFERPKTGDIIQGLPRIEELLEARKPK 1033 Query: 1152 EPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVIS 1211 E ILA+ G + VI G E + + + V +G+ V+ G ++ Sbjct: 1034 EACILAKQPGTAQLEVFDDLVQLRVIES--GGAATEYPLTPGQTVIVSDGQTVDVGQPLT 1091 Query: 1212 DGPEAPHDILRL-----------------RGVHAVTRYIVNEVQDVYRLQGVKINDKHIE 1254 DGP PH+IL + + ++VNEVQ VY+ QG+ I+DKHIE Sbjct: 1092 DGPANPHEILEVFFNYYLEQDGMVYEAALKSFQKCQIFLVNEVQSVYQSQGIDISDKHIE 1151 Query: 1255 VIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASL 1314 VIVRQM K I + G + L GE E +V+ N + G A Y+ LLGITKASL Sbjct: 1152 VIVRQMTSKVRIDDGGDTTTLPGELTELRQVEQVNEAMFITGGAPARYTPVLLGITKASL 1211 Query: 1315 ATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRA 1374 T+SFISAASFQETTRVLTEAA+ GK D LRGLKENVI+GRLIPAG+G+ ++D + Sbjct: 1212 NTDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLIPAGSGFNAYEDPVL--- 1268 Query: 1375 AGEAPAAPQVTAEDASASLAELLN 1398 A V E+ + L + +N Sbjct: 1269 -----AEESVMDEEPYSYLEDDVN 1287 >UniRef50_P23580 DNA-directed RNA polymerase subunit beta' n=2 Tax=Euglena RepID=RPOC1_EUGGR Length = 586 Score = 482 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 227/605 (37%), Positives = 331/605 (54%), Gaps = 51/605 (8%) Query: 18 DAIKIALASPDMIRSWS---------FGEVKKPETINYRTFKPERDGLFCARIFGPVKDY 68 D ++I +ASP + SW+ G + + +++ T KP GL C RIFG K Sbjct: 3 DYVRIKIASPQQVLSWTERSLPDGRLIGRLTNFDMLHFETKKPVFGGLLCERIFGSTKTN 62 Query: 69 ECLCGKYKRLKHRGV------ICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPS 122 +C CGKYK++ +G +C C VE+ RR RMG+I+L P H W+LKS P Sbjct: 63 QCFCGKYKKMFQKGYANNFVLVCANCFVEINNCNRRRFRMGYIDLVFPLIHTWYLKSRPC 122 Query: 123 RIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGA 182 + ++L +++I+++ + +SY+ I G GA Sbjct: 123 YLAIMLGKKVKNIKKMCFMDSYIKIRNND---------------------GQTVGILTGA 161 Query: 183 EAIQALLKSMDLEQECEQLR------EELNETNSETK---RKKLTKRIKLLEAFVQSGNK 233 EAI + L +DLE E L E+L E N E RKK RIKL+ AF+Q+ K Sbjct: 162 EAIYSRLSKIDLESLIEFLYKRLVGIEKLKEYNFEKYLWLRKKFINRIKLVNAFIQTNTK 221 Query: 234 PEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVR 293 P W+++ LPVLPPD+RP+V L G +DLN LY +I NN++ +L P+ + Sbjct: 222 PIWIMIHFLPVLPPDIRPVVKLQDGTVIMTDLNFLYIDIIYGNNKIIKLRKFLLPEEFML 281 Query: 294 NEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRS 353 NEKR LQ VDA ++N N + LKS+ + +KGK+GRFR+NLLGK VDYSGRS Sbjct: 282 NEKRSLQVKVDAFINNENISENPYEQNDKKLKSITEGLKGKKGRFRENLLGKTVDYSGRS 341 Query: 354 VITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILD 413 VI V P L LH+CG+P +ALELF P + L + I+ AK+ + V +L+ Sbjct: 342 VIVVEPKLLLHECGMPLDIALELFHPILIKMLIRFKFSVGIREAKRHIYNASNFVIPVLE 401 Query: 414 EVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLT 473 +V+ + +LLNRAPTLHRLGIQ+F+P + KAI LHPLVC+A+NADFDGDQM +H+PL+ Sbjct: 402 KVLNSYFILLNRAPTLHRLGIQSFQPKVTFEKAILLHPLVCSAFNADFDGDQMGIHIPLS 461 Query: 474 LEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAK---GEGMVLTGP 530 L++ EAR++++S NN + PANG P I+PSQD+VLG YY+T + N + Sbjct: 462 LKSLAEARSMLISINNCVLPANGLPSILPSQDMVLGCYYVTLENCNLDFILTNLKIYANI 521 Query: 531 KEAERLYRSGLASLHARVKV---RITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGL 587 ++ + Y G + V + + K++ + K +K R + I + Sbjct: 522 EKVKSAYHKGEILIQTFVWLICQKFPNILKNSKIRIKKKRMVKKLVFFRTTIGRIFFDDM 581 Query: 588 PYSIV 592 + Sbjct: 582 IKEFL 586 >UniRef50_Q5KIF6 DNA-directed RNA polymerase n=5 Tax=Dikarya RepID=Q5KIF6_CRYNE Length = 1727 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 174/900 (19%), Positives = 327/900 (36%), Gaps = 183/900 (20%) Query: 235 EWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL------------ 282 + + V+PV P RP + F S N L V++ R+++L Sbjct: 390 DMFFMEVVPVTPTRFRPAARMGDELFENSQ-NSLLTAVLSTCQRIQKLNQDLINQAKAER 448 Query: 283 ----LDLAAPDIIVRNEKRML------QEAVDALLDNGRRGRAITGSNKRPLKSLADMIK 332 LD A R + +L Q V++ +D+ + A+ K P + +++ Sbjct: 449 GEHVLDAVAKAQGGRTFELLLEALIKLQHDVNSFVDSTKNP-AVMRQGKLPPPGVKQLLE 507 Query: 333 GKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLAT 392 K+G FR++++GKRV+Y+ RSVI+ + ++ G+P A +L P + + L Sbjct: 508 KKEGLFRKHMMGKRVNYAARSVISPDINIETNEIGIPPVFAKKLTYPEPVTQQNVAELRQ 567 Query: 393 TIKAAKK------MVEREE---------------------------------------AV 407 + K +V+ E+ A Sbjct: 568 LVINGPKIHPGAALVQNEDGTQISLDKLTLDQRISLANQLLTPQGSEDNIGAASIGPAAK 627 Query: 408 VWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAYNADFDGDQM 466 + + V+LNR PTLH+ + ++ G K I++H C +YNADFDGD+M Sbjct: 628 NKKVYRHIRDGDIVILNRQPTLHKPSMMCHRVKVLLGEKTIRMHYANCNSYNADFDGDEM 687 Query: 467 AVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVL-GLYYMTRDCVNAKGEGM 525 +H P A+ EA+ + + N L P +G P+ QD V+ G++ + + + Sbjct: 688 NIHFPQNEVARAEAQMIANTDNQYLVPTSGGPLRGLIQDHVVAGVWMCNKSSFFTREQYF 747 Query: 526 VLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRA-------- 577 L +G + + + I + + G+ + T L + T A Sbjct: 748 QLIYGALRTENNYTGRSRIIT-LPPAIFKPKPLWTGKQIMSTILTNLTPSNAKGLNLTSR 806 Query: 578 -------------------ILWMIVPKG-LPYSIVNQALGKKAISKMLNTCYRILGLKPT 617 +I G L +++++ + ++++ + + G Sbjct: 807 NKVQNKLWRRDDSSDPAMSEENVIFLDGHLVCGVLDKSQYGASGYGLVHSVHELYGPYIA 866 Query: 618 VIFADQIMYTGFAYAARSGASVGIDDMVIPEK----KHEIISEAEAEVAEIQEQF----Q 669 + Y S +DD+++ + + +I+ +A + A ++ + Sbjct: 867 NRLLGVLSRLLTKYLQHDAFSCRMDDLILTAEGEKIRKDILDKASGDGAIAAMKYVGLPE 926 Query: 670 SGLVT-AGERYNKVIDIWAAANDR-----VSKAMMDNL-QTETVINRDGQEE---KQVSF 719 + N I + D + M +T + IN D + + Sbjct: 927 GSKIEDPDTAKNLAIRLEEILRDDHLMAGLDAVMQSAFNKTTSKINNDVLPDHLVRPFPD 986 Query: 720 NSIYMMADSGARGSAAQIRQLAGMRGLMAK--------------PDGSIIET------PI 759 N++ MM SGA+GS Q++ + G A P +T + Sbjct: 987 NNMQMMTISGAKGSKVNASQISTLLGQQALEGRRVPTMVSGKTLPSFKAFDTSARAGGYV 1046 Query: 760 TANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEG 819 F G+ +Y+ R+GL DTA+KT+ SGYL R L+ + + V D Sbjct: 1047 ANRFLTGIRPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGVKVHYDHTVRDSD 1106 Query: 820 IMMTPVIEGGDVKEPLRDRVLGR--------VTAEDVLKPGTADILVPRNTLLHEQWCDL 871 + + G D + + L + ++ + ++PG V L H + Sbjct: 1107 SSVLQFLYGEDSLDVTKQTHLNKFDFAAANHLSLLNKVRPGDIAGKVSDEALSHMKKALK 1166 Query: 872 LEENSV----DAVKVRSVVSCDTDFGVCAHCYGRD------------------------- 902 V + R + S + + Y D Sbjct: 1167 KPHKHVPALSEYSPSRYIGSMSEAYAKKLNNYIEDNKLGYITKKGESKASPYTSERVPEK 1226 Query: 903 ----LARGH----IINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKN 954 LAR ++ GEA+G++A+Q +GEP TQ+T+ TFH+ G + +++ Sbjct: 1227 EFLGLARARYMRSLVEPGEAVGLLASQGVGEPSTQMTLNTFHLAGHGAANVTLGIPRLRE 1286 Score = 73.6 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 80/221 (36%), Gaps = 40/221 (18%) Query: 1145 FEARRPKEPAI-LAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGER 1203 F A PK + + E + S E + R + D + +I + L Sbjct: 1538 FPASAPKLLLVDIIERTCRASVVHEIENIGRCMKIFSDKGEFTRSLITEGSNLRGMWALA 1597 Query: 1204 VERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRK 1263 E D+ + IL+ GV A R I++EV V+ G+ ++ +H+ +I M Sbjct: 1598 DELVDLDRLSSNDIYAILQTFGVEAARRAIIDEVSSVFGAYGIAVDYRHLTIIADYMTH- 1656 Query: 1264 ATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAA 1323 G F NR GI+ A S + A Sbjct: 1657 ----AGGFRPF--------------NRT----------------GIS----AKSSPLLKA 1678 Query: 1324 SFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 SF+ T L+EA + G D+L +++G+ +GTG Sbjct: 1679 SFETTVAFLSEATLHGDFDDLTSPAAKIVMGKPSASGTGAF 1719 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 62/175 (35%), Gaps = 30/175 (17%) Query: 28 DMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEK 87 D I++ S +V P ++ P R GL+ ++ GP+ + +CE Sbjct: 22 DDIKAISVKKVDNPILLDNLNL-PTRGGLYDPKL-GPMGSRD--------------LCET 65 Query: 88 CGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLL----DMPLRDIERVLYFES 143 C + GHIEL +P H F+ + + + +I Y Sbjct: 66 CHLSYFACP---GHFGHIELPTPVYHPLFMNQCYHLLRGVCLYCHHFKMPEIVATSYVAR 122 Query: 144 YVVIEGG-------MTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKS 191 +++ G + L I ++ D E+ E D M A A Q + + Sbjct: 123 LRLLDAGLLTESHEVAALFDNAIGKSSRHRDTDEDEDAEGDVDMDAPAPQTIESA 177 >UniRef50_Q9MUS7 DNA-directed RNA polymerase subunit beta'' n=2 Tax=Eukaryota RepID=RPOC2_MESVI Length = 1223 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 202/730 (27%), Positives = 333/730 (45%), Gaps = 81/730 (11%) Query: 585 KGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDM 644 + N+ + K I +++ G T D++ GF +A ++G S+ IDD+ Sbjct: 16 NSMKLFFCNRIMNKGEIRRIIAWFLFNHGTSRTAHMVDRLKILGFYHATKAGISLSIDDL 75 Query: 645 VIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTE 704 IP K ++ +AE E+A+ Q+ + G +TA ER+ KVID W + ++ + ++ + Sbjct: 76 SIPPTKKWLLEDAEQEIAKTQKNYSIGKITAVERFQKVIDTWHSTSETLKNEVVQYFEQT 135 Query: 705 TVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFR 764 N +YMMA SGARG+ +Q+ QL GMRGLM+ P G II+ PI +NFR Sbjct: 136 N------------PLNPVYMMAFSGARGNLSQVSQLVGMRGLMSDPQGQIIDLPIRSNFR 183 Query: 765 EGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTP 824 EGL V +Y IS +GARKGL DTAL+TA+SGYLTRRLVDVAQD+++ E DCGT GI++ P Sbjct: 184 EGLTVTEYVISCYGARKGLVDTALRTADSGYLTRRLVDVAQDMIIRETDCGTKSGILLGP 243 Query: 825 VIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRS 884 V + V L++R++GRV AE++ P + +N + D + E + VRS Sbjct: 244 VKDEQKVVFSLQERLIGRVLAENIYSPKQKQYIAKKNQDISASLSDKICEIKRTNILVRS 303 Query: 885 VVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRA 944 ++C + VC CYG LA G++++ GEA+G+IAAQSIGEPGTQLTMRTFH GG + Sbjct: 304 PLTCKSIRSVCQLCYGWSLAHGNLVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTGN 363 Query: 945 AAESSIQVKNKGSIKLSNVKSV--VNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAV 1002 A+ I+ G I S ++ G++ + +++ + + + + + +VP + Sbjct: 364 IAK-QIRSSIDGKIIYSLTNTIPMRTRHGEIALITQSN-INICIQGKNKEFNIEVPINTI 421 Query: 1003 LAKGDGEQVAGGETVANWDP---------HTMPVITEVSGFVRFTDMIDGQTITRQTDEL 1053 L +G V + +A + V ++ SG + F +++ + + ++ Sbjct: 422 LLVNNGSMVRAKQLIAEVSAPVNAQSVEIASKYVASDFSGEIHFENLLLQEKKSAYGHKM 481 Query: 1054 TGLSSL-------------------VVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTD 1094 ++ D+A+ G + I G I T Sbjct: 482 NRAGQYGGLLWILSGQVYKFSLDVPLMFDTADYIHNGSCMAEHNIISQYGG----ILQTS 537 Query: 1095 MPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGG----TKDITGGLPRVADLFEARRP 1150 + + + + L+ I T D+ + Sbjct: 538 ENNLTIDNSNSYLYVLNSSMTIINAYLSHIKNARSEAYILTDDLNQKF--FMQVESNNVI 595 Query: 1151 KEPAILAEI---------SGIVSFGKETKGKRRLVITPVD----------GSDPYEEMIP 1191 K I+A+ GI+ + E + ++T + + Sbjct: 596 KNNQIIAKFVTKTYLTNTGGILKYSSEIEVDEYDIVTQSYPVRKGGIIMWIPEETHLINK 655 Query: 1192 KWRQLNVFEGERVERG-DVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYR----LQGV 1246 L V + E VE G +I D + ++ + + R +V + +YR Q Sbjct: 656 DASLLMVRDCEYVEAGTQIIKDLICHSSGLAQVSQTNDILREVVIKPGKIYRPIDFSQ-- 713 Query: 1247 KINDKHIEVI 1256 + DKH +I Sbjct: 714 -VLDKHQTLI 722 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 126/382 (32%), Positives = 179/382 (46%), Gaps = 61/382 (15%) Query: 1001 AVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQ----TITRQTDELT-- 1054 L + + G +A + +I + G VR ++ + I + D++T Sbjct: 857 TRLVRKFNNYIIPGTILAKTE-----IIAKDHGEVRQSNKNFEEQKSFLIMNEHDQMTLF 911 Query: 1055 GLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQ----YFLPGKAIVQLE 1110 ++ + GK++ P + + G + + + + Y + +A++ ++ Sbjct: 912 VKNAYEFFQLGDLVHKGKEIVPGI-LAPQSGQVIQLQANRVTLRLARPYLVSSEAVLYVD 970 Query: 1111 DGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETK 1170 DG + SGDTL + E T DI GLPR+ +L EARR K K Sbjct: 971 DGDFVKSGDTLVMLIFEQSKTGDIVQGLPRIEELLEARRTKG-------------LKPLP 1017 Query: 1171 GKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVT 1230 ++ + I K + + + Sbjct: 1018 NNLHDLLQSFFDEATEKYGIQKAAK----------------------------KSFEKLQ 1049 Query: 1231 RYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANR 1290 ++VNEVQ VY+ QGV I+DKHIEVIVRQM K I G + L GE +E R++ NR Sbjct: 1050 LFLVNEVQSVYKAQGVHISDKHIEVIVRQMTSKVMIEEGGDTTLLPGELIELHRIENMNR 1109 Query: 1291 ELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKEN 1350 + V A Y +LGITKASL TESFISAASFQETTRVLT+AA+ GK D LRGLKEN Sbjct: 1110 NVS----VHAKYKPIVLGITKASLNTESFISAASFQETTRVLTKAAIEGKTDWLRGLKEN 1165 Query: 1351 VIVGRLIPAGTGYAYHQDRMRR 1372 VI+GRLIPAGTG+ H R Sbjct: 1166 VIIGRLIPAGTGFNVHDKMYSR 1187 >UniRef50_B0CXW7 DNA-directed RNA polymerase n=1 Tax=Laccaria bicolor S238N-H82 RepID=B0CXW7_LACBS Length = 1711 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 180/905 (19%), Positives = 319/905 (35%), Gaps = 192/905 (21%) Query: 235 EWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL-LDLAAPDIIVR 293 + L V+PV P RP L F N+L +V+N + R++ L LDL A Sbjct: 370 DMFFLEVIPVAPTRFRPPAKLGEVLF-EHPQNELLSKVLNTSYRMRDLSLDLRAASQKTG 428 Query: 294 NEKR---------------MLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRF 338 N LQ V++ +D+ + + S K P + ++ K+G F Sbjct: 429 NVDEGARKTLMSALLDRLVQLQVDVNSFMDSSKNPAPVRQS-KLPPAGVKQGLEKKEGLF 487 Query: 339 RQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI---- 394 R++++GKRV+Y+ RSVI+ + ++ G+P A +L P L + Sbjct: 488 RKHMMGKRVNYAARSVISPDVNIEPNEIGIPPVFARKLTFPEPVTPANFHELRQRVITGP 547 Query: 395 --KAAKKMVEREE-----------------------------------------AVVWDI 411 +VE E+ A+ + Sbjct: 548 HGYPGATLVEYEDGHQQSLDKLTVEQRTAIANQLLTPQEGDRGSGRRGLYTRTTAMNKKV 607 Query: 412 LDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAYNADFDGD-QMAVH 469 + ++LNR PTLH+ + A + ++ G K I++H C +YN +F QM +H Sbjct: 608 YRHLRDGDILILNRQPTLHKPSMMAHKARVLTGEKTIRMHYANCNSYNGEFMAILQMNIH 667 Query: 470 VPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVL-GLYYMTRDCVNAKGEGMVLT 528 P A+ EA + + N L P +G P+ QD V+ G++ +D + E L Sbjct: 668 FPQNHVARAEAMMIANTDNQYLVPTSGNPLRGLIQDHVVAGVWMTCQDAFFTREEYCQLL 727 Query: 529 GPKEAERLYRSGLASLHARV---KVRITEYEKDANGELVAKTSLKDTTV----------- 574 R S AR+ I + + G+ + T LK+ T Sbjct: 728 -----YGALRPEEESRGARLVTLPPTIWKPKPMWTGKQIISTVLKNITPKPFEGLSLNAK 782 Query: 575 -----------GRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQ 623 + + + L ++++A ++++ Y + G Sbjct: 783 TKVPGYLWGADSKEDQVVFMDGELLCGVLDKAAFGATDYGLVHSVYELYGADVAGRLLGV 842 Query: 624 IMYTGFAYAARSGASVGIDDMVIPE----KKHEIISEAEAEVAE-IQEQFQSGLVTAG-E 677 + + + +DD+++ K++++I E E E F S T E Sbjct: 843 LSRLFTKFLQHRAFTCRMDDLILTPEGDGKRNDLIKRGENLGTEGAIENFPSLSSTPKLE 902 Query: 678 RYNKVIDIWAAAN---------DRVSKAMMDNLQTE-TVINRDGQEEKQVSFNSIYMMAD 727 ++ + D K + L + + I ++ FN + M Sbjct: 903 IAAELTTLLEDVLRDDNKMAGLDVTVKTKLSKLTSSISDICLPNGLLRKFPFNHMQTMTL 962 Query: 728 SGARGSAAQIRQLAGMRGLM--------------AKPDGSIIET------PITANFREGL 767 SGA+GSA RQ++ G P ET + + F G+ Sbjct: 963 SGAKGSAVNARQISCALGQQELEGRRVPVMVSGKTLPSFKAFETKAIAGGYVVSRFLTGI 1022 Query: 768 NVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIE 827 +++ R+GL DTA+KT+ SGYL R L+ + + V D + Sbjct: 1023 KPQEFYFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGIRVHYDHTVRGSDNSIYQFAY 1082 Query: 828 GGDVKEPLRDRVL---GRVTAEDV-----LKPGTADILVPRNTLL---------HEQWCD 870 GGD + R + L G + + ++P +V +T + D Sbjct: 1083 GGDGLDVTRQKHLYQFGFIVQNQISLARHIRPADIQNVVDESTAISYMKKVLKRSPDRPD 1142 Query: 871 LLEENSVDAV--------KVRSVVSCDTDFGVCAHCYGRD-----LARGH---------- 907 + D R + S F + Y + LA Sbjct: 1143 KNKPAKRDKYDPALSLYSPSRYLGSTSEQFAIAVDNYVKTNPHNLLAEKEDEVRFKSRTP 1202 Query: 908 ------------------IINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESS 949 +++ GEA+G++A+Q +GEP TQ+T+ TFH G + Sbjct: 1203 PLHPRNFRLLMNVKYMKSLVDPGEAVGLLASQGVGEPSTQMTLNTFHFAGHGAANVTLGI 1262 Query: 950 IQVKN 954 +++ Sbjct: 1263 PRLRE 1267 Score = 69.7 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 19/115 (16%) Query: 10 AQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYE 69 A + + + + IR S ++ P ++ +P GL+ + GP Sbjct: 4 AHSLPSTVAGVSFSFLTSQDIRRISVKQIVNPVLLD-DLNRPNIGGLYDPSL-GP----- 56 Query: 70 CLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRI 124 R IC C + GHIEL +P H F+ ++ + + Sbjct: 57 ---------SDRSDICATCHLTYFTCP---GHFGHIELPAPVFHPLFMTNMYNLL 99 Score = 67.4 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 81/227 (35%), Gaps = 46/227 (20%) Query: 1138 LPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLN 1197 +P++ + R I+ EI GI + K+ + +GS+ + Sbjct: 1524 MPKLLFVGIVERTCRATIVREIPGITECFQAKDEKKGDITLTTNGSN-----FRGMWEFA 1578 Query: 1198 VFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIV 1257 V E + D I + IL+ GV I+ E+ ++ ++++ +H+E+I Sbjct: 1579 VSSDESILEDDEIY--SNDIYAILKTYGVEMARAAILREMGGIFGAYNIQVDRRHLELIA 1636 Query: 1258 RQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATE 1317 M + G F + G + + Sbjct: 1637 DYMTF-----DGGYKPF---------------------NRKGISTNP------------- 1657 Query: 1318 SFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 S + AS++ T L++A + G D+L N+++GR GTG Sbjct: 1658 SPLLKASYETTGAFLSDATLYGDFDDLSTPSGNIVLGRPNCTGTGVF 1704 >UniRef50_Q0U0A2 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria nodorum RepID=Q0U0A2_PHANO Length = 1691 Score = 471 bits (1213), Expect = e-131, Method: Composition-based stats. Identities = 176/853 (20%), Positives = 304/853 (35%), Gaps = 150/853 (17%) Query: 235 EWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDII--- 291 + + V P R L G A S N LY+ ++N + ++++ + Sbjct: 366 DMFFTEAVVVPPNRYR-LEDKTGDSIAESPKNSLYKGILNACDAMRQISNEMKGQENEAG 424 Query: 292 --------VRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLL 343 ++ + LQ AV+AL+D + + +++ K+G FR+N++ Sbjct: 425 YRRRNFDDLQTQWVNLQGAVNALIDKEANPTQGRAAITNA-DGIKQVLEKKEGLFRKNMM 483 Query: 344 GKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAA------ 397 GKRV+++ RSVI+ P + ++ G+P A++L P L + Sbjct: 484 GKRVNFAARSVISPDPNIETNEIGVPPVFAIKLTYPEPVTNHNFYDLKEAVLNGPDKWPG 543 Query: 398 ---------------KKMVEREEAVVWDIL----------------DEVIREHPVLLNRA 426 KK E A+ +L + V++NR Sbjct: 544 AVAIENESGQVIALRKKNYEERLALANQLLAPSNSYGNGSKNKKVHRHLNNGDVVIMNRQ 603 Query: 427 PTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMM 485 PTLH+ + A ++ G K I++H C YNADFDGD+M +H P A+ EA + Sbjct: 604 PTLHKPSMMAHRARVLPGEKTIRMHYANCNTYNADFDGDEMNMHFPQNELARAEAMTVAD 663 Query: 486 STNNILSPANGEPIIVPSQDVV-LGLYYMTRDCVNAKGEGMVL--TGPKEAERLYRSGLA 542 + + LS G+P+ QD + +G++ +D + E L + + + SG Sbjct: 664 TDHQYLSATAGKPLRGLIQDHISMGVWITNKDTFFTREEYHQLLYSCLRPEDGHTTSGRL 723 Query: 543 SLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAIS 602 V I + G+ + T LK+ Y + L A Sbjct: 724 ET---VDPAIWKPVPLWTGKQIFTTVLKNVKPAE------------YQDLTMTLLGPAGG 768 Query: 603 KMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEK----KHEIISEAE 658 +N Y G I S G++D+++ E+ + E +S+A+ Sbjct: 769 GFINGVYEAYGETIAGRVLSIIGRLLTKLLHMRAFSCGVEDLILTEEGDRARIEELSKAQ 828 Query: 659 AEVAEIQEQF--------QSGLVTAGERYNKVIDIWAAAN--DRVSKAMMDNLQTE-TVI 707 ++ ++ R V+ D ++ + T Sbjct: 829 TSGFKVATEYVTLDASKIDPMNPELRRRMEDVLRDDEKQRGLDMLTTTANSQISAAVTTA 888 Query: 708 NRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM--------------AKPDGS 753 GQ K N + M SGA+GS Q++ G P Sbjct: 889 CLPGQLIKPFPKNQMQAMTGSGAKGSLVNANQISCNLGQQVLEGRRVPVMVSGKTLPCFK 948 Query: 754 IIET------PITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDL 807 ET I F G+ +Y+ R+GL DTA+KT+ SGYL R ++ + L Sbjct: 949 PFETSVRAGGYIVNRFLTGIRPQEYYFHMMAGREGLIDTAVKTSRSGYLQRCIIKGMEGL 1008 Query: 808 VVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLG--RVTAEDVLKPGT--------ADIL 857 V D M + G D + + + L + AE+ L + Sbjct: 1009 HVEYDTSVRDSDGSMVQFLYGEDGLDITKQKYLNDFKFQAENFLSLAQTLQTQAAFGRVW 1068 Query: 858 VPRNTLLHEQWCDLLEENSVDAV--------KVRSVVSCDTDFGVCAHCY---------- 899 P T +++ + + ++ R S F Y Sbjct: 1069 SPEATEHNKKASKKARKGDITSMDPALALYEPSRHSGSTSEKFYQAKREYTEKNPDKLLK 1128 Query: 900 -------GRDLARG-----------HIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAA 941 G L + ++ GEA+GV+A QSIGEP TQ+T+ TFH+ G A Sbjct: 1129 HKKKDPEGEILKKSFEQMLDLKYLRSLVEPGEAVGVVAGQSIGEPSTQMTLNTFHLAGHA 1188 Query: 942 SRAAAESSIQVKN 954 ++ +++ Sbjct: 1189 AKNVTLGIPRLRE 1201 Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 45/214 (21%), Positives = 70/214 (32%), Gaps = 57/214 (26%) Query: 1154 AILAEISGIVS--FGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVIS 1211 A + I GI S + KG+ +IT E +F + V Sbjct: 1496 ATIHVIPGITSAMYSAAAKGEEAAIITAGSNLLAMREYSHIIDVNRIFTNDIVG------ 1549 Query: 1212 DGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGS 1271 +L+L GV A IV E+ V+ G+ ++ +H+ +I M + G Sbjct: 1550 --------MLQLYGVEACRATIVREMHAVFSGHGISVDLRHLNLIADTMTK-----GGGF 1596 Query: 1272 SDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATE-SFISAASFQETTR 1330 + F + L T S S SF+ T Sbjct: 1597 TPF-----------------------------------NRIGLKTNVSPFSKMSFETTVG 1621 Query: 1331 VLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 L +A + D+L ++VGRL GTG Sbjct: 1622 FLKDAVLERDWDDLSNPSARIVVGRLGKLGTGAF 1655 Score = 59.0 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 49/160 (30%), Gaps = 23/160 (14%) Query: 9 KAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDY 68 Q + +++ S +R+ S + P T + P GL A + + + Sbjct: 3 THQPTSSAIQSVEFGFLSTQDVRTLSVKRITNPTTFD-SLLHPVAGGLHDAALGAFLDNP 61 Query: 69 ECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLL 128 C CG +T GHIEL P ++ FL ++ LL Sbjct: 62 ----------------CSTCG--LTTFMGCPGHCGHIELPVPVYNLTFL----DQLLRLL 99 Query: 129 DMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDA 168 ++ V L R ++ E L Sbjct: 100 RGKCVYCHQLKLARVTVNEFVSRLRLIRCGLVQEANELHE 139 >UniRef50_D1I9R9 DNA-directed RNA polymerase (Fragment) n=2 Tax=Vitis vinifera RepID=D1I9R9_VITVI Length = 1669 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 194/1012 (19%), Positives = 344/1012 (33%), Gaps = 191/1012 (18%) Query: 122 SRIGLLLDMPLRDIERVLYFESYVVIEGGMTNL---------ERQQILTEEQYLDALEEF 172 S + L + RD + +S V + R ++ + L Sbjct: 190 SVMDNFLKLKHRDCKN-CKAKSPQVTKPTFGWFHMAGLSDAQTRANVIRGSKLERPLNGV 248 Query: 173 GDEFDAKMGA--EAIQ----ALLKSMDLEQECEQLREE------LNETNSETKRKKLTKR 220 + A + IQ L+ + E ++++ L + ++L + Sbjct: 249 DTDETHSSIAPTDGIQDTVTKRLERKGAQAPIEFIKQKSFFSGPLLPSEVRDIMERLWEN 308 Query: 221 IKLLEAFV---------QSGNKP--EWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLY 269 L +F+ SGNK L + V P RP L Sbjct: 309 EAELCSFISDILQERLGASGNKAGYSMFFLETILVPPIKFRPPSK-GQISVMEHPQTVLL 367 Query: 270 RRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPL-KSLA 328 +V+ N L + + + LQ++++ L D G+ G +R + Sbjct: 368 GKVLQANIALGNAHANNSERSKIISRWMDLQQSINVLFD----GKTAAGQGQRDTGSGIC 423 Query: 329 DMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELR 388 +++ K+G FRQ ++GKRV+++ RSVI+ PYL +++ G+P AL L P + Sbjct: 424 QLLEKKEGVFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVV 483 Query: 389 GLATTIKAA----------------------KKM-------VEREEAVVWD--------- 410 L I KKM + VV Sbjct: 484 KLRDAIINGPEIHPGATHYVDKLSTVKLAVNKKMRISISRKLPSSRGVVAQPGRSSDNEF 543 Query: 411 ----ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAYNADFDGDQ 465 + + VL+NR PTLH+ I A +++G K +++H C+ YNADFDGD+ Sbjct: 544 EGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDE 603 Query: 466 MAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGM 525 M VH P ++ EA ++ + N + P+ G+PI QD ++ +T+ E Sbjct: 604 MNVHFPQDEISRAEAYNIVNANNQYIVPSRGDPIRGLIQDHIVSAVLLTKKDTFLTREQY 663 Query: 526 VLTGPKEAERLYRSGLASLHAR-------------VKVRITEYEKDANGELVAKTSLKDT 572 + + I + E +G+ V L Sbjct: 664 NQLLYSSGLSSGSGSFIGKPGKKVSVLDSEDEMQPLLPAIWKPEPLWSGKQVITAVLNHI 723 Query: 573 TVGRAILW----MIVPKGLPYSIVNQALGKK----------------------------- 599 T GR +P+ S +++ K Sbjct: 724 TRGRKPFTTEKDGKIPREYFGSEIDEKKSGKGKDPGSDRRKEKRIEKKHGEYKLLIHKNE 783 Query: 600 -----------AISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPE 648 +++ + G I + + G + G+DD++I Sbjct: 784 LVRGVIDKAQFDKYGLVHMVQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDDLLISP 843 Query: 649 K-----KHEIISEAEAEVAEIQEQF---QSGLVTAGERYNKVIDI-----WAAAN--DRV 693 K E+ ++E + +F G + + +V I AA DR+ Sbjct: 844 NYDIARKIEL-DKSENIGELVHCKFIGSNHGKIDPVKLQVEVEKIILSNGEAAITRLDRM 902 Query: 694 SKAMMDNLQTETVINRDGQ-EEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM----- 747 K ++ L ++ + + K N + +M +GA+GS Q++ G Sbjct: 903 MKNELNELTSKVNKDLLLKGLVKPFPKNCLSLMTTTGAKGSTVNFSQISSFLGQQDLEGK 962 Query: 748 ---AKPDGSIIE------------TPITANFREGLNVLQYFISTHGARKGLADTALKTAN 792 G + I+ F GL+ +Y+ R+GL DTA+KT+ Sbjct: 963 RVPRMVSGKTLPCFPPWDCAARAGGFISDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSR 1022 Query: 793 SGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVL---------GRV 843 SGYL R L+ + L V D + G D + + + V Sbjct: 1023 SGYLQRCLIKNLECLKVCYDYTVRDSDGSIVQFNYGDDGVDVHQTSFITEFEALAVNEEV 1082 Query: 844 TAEDVLKPGTAD-ILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRD 902 E + G + + L ++ +E + ++ + Y Sbjct: 1083 VCEKFGQDGKFNGYIQKLPKELRKKTKKFIEGFMEERQDFDNMKKQKDFVNLVKQKYISS 1142 Query: 903 LARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKN 954 LA+ GE +GV+AAQS+GEP TQ+T+ TFH+ G +++ Sbjct: 1143 LAQ-----PGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEVNVTLGIPRLQE 1189 Score = 63.6 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 53/338 (15%), Positives = 108/338 (31%), Gaps = 61/338 (18%) Query: 1032 SGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIP 1091 +G D+++ + + +E G+S DS + K + Sbjct: 1380 AGLTEEIDLVEDE-VEISNNEEVGISDPKDEDSKVPSKSKSSKNKKAKTEAKRKKRFRAI 1438 Query: 1092 GTDMPAQYFLPGKAIVQLEDGVQISSGDTL-ARIPQESGGTKDI-TGGLPRVADLFEARR 1149 D + K + L A+I Q++ I + G + + + + Sbjct: 1439 KKDFDRAILVKAKGTYFEVHFRFTNEPHILLAQIAQKAANKVYIRSSGKIDLCQVIDCNK 1498 Query: 1150 PKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDV 1209 ++ +G++ K + + ++ +P + V + D Sbjct: 1499 ----------DQVIYYGRDPKKRENI-------PGEEKKKLPALQTAGVDFTAFWKMQDE 1541 Query: 1210 I---SDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATI 1266 + H +L GV A I+ EV +V+ GVK+N +H+ +I M Sbjct: 1542 LDVRYVYSNNVHAMLNTFGVEAARATIIKEVFNVFNAYGVKVNIRHLSLIADFMT----- 1596 Query: 1267 VNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQ 1326 ++G R + +G + + S S +F+ Sbjct: 1597 -HSGGY-----------------RPMNRHGGIA---------------ESVSPFSKMTFE 1623 Query: 1327 ETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 ++ + EAA G D L + +G + GTG Sbjct: 1624 TASKFIVEAASHGMTDNLESASARICLGLPVKMGTGCF 1661 Score = 50.5 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 19/99 (19%) Query: 14 TEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCG 73 TE +A+K + + + +R +SF ++ P ++ +P GL+ + Sbjct: 9 TEFVEAVKFSFFTDEEVRKYSFKKITSPLMLD-SVQRPVPGGLYDPALGSI--------- 58 Query: 74 KYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTA 112 C+ CG GHI+L S Sbjct: 59 ------DENTPCQSCGQRSFYCP---GHCGHIDLVSSVY 88 >UniRef50_B2VT60 DNA-directed RNA polymerase n=7 Tax=Leotiomyceta RepID=B2VT60_PYRTR Length = 1790 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 173/880 (19%), Positives = 300/880 (34%), Gaps = 168/880 (19%) Query: 234 PEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL--LDLAAPDII 291 P+ + V P RP G S N Y+ +I + ++ P+ Sbjct: 369 PDMFFTQAIIVPPNKYRPEDGT-GETITESPKNKPYKSIIEACETINQISHEMRGRPNET 427 Query: 292 VRNEKRM---------LQEAVDALLDNGRRGRAITG-SNKRPLKSLADMIKGKQGRFRQN 341 ++ LQ V+AL+D + G + + ++ K+G FR+N Sbjct: 428 GYRQRNFDDMQTQFVNLQGVVNALIDCD--ANPVQGRAGAVNTDGIKQALEKKEGLFRKN 485 Query: 342 LLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAA---- 397 ++GKRV+++ RSVI+ P + ++ G+P A +L P L + Sbjct: 486 MMGKRVNFAARSVISPDPNIETNEIGVPPVFAKKLTYPEPVTNHNFYDLKEAVLNGPDKW 545 Query: 398 -----------------KKMVEREEAVVWDIL----------------DEVIREHPVLLN 424 KK + A+ +L + V++N Sbjct: 546 PGAHAIENEFGQIIALRKKTYDERLALANQLLAPTNSYSNGARNKKVHRHLNNGDVVIMN 605 Query: 425 RAPTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARAL 483 R PTLH+ + A ++ G K I++H C YNADFDGD+M +H P A+ EA + Sbjct: 606 RQPTLHKPSMMAHRARVLPGEKTIRMHYANCNTYNADFDGDEMNMHFPQNELARAEAMTI 665 Query: 484 MMSTNNILSPANGEPIIVPSQDVV-LGLYYMTRDCVNAKGEGMVL--TGPKEAERLYRSG 540 + + LS G+P+ QD + +G+ +D + E L + + E SG Sbjct: 666 ADTDHQYLSATAGKPLRGLIQDHISMGVSISNKDTFFTREEYHQLLYSSLRPEEGHTTSG 725 Query: 541 LASLHARVKVRITEYEKDANGELVAKTSLKD---------TTVGRAILW----------- 580 V + + G+ + T LK+ T ++ Sbjct: 726 RLET---VSPAVLKPRPMWTGKQIITTILKNIKPAEYQGLTLTSKSSTNGKLWGVHSEEQ 782 Query: 581 -MIVPKGLPYSIVNQALGKKAIS----KMLNTCYRILGLKPTVIFADQIMYTGFAYAARS 635 +IV G +++ + K I ++N Y G I Sbjct: 783 IVIVKDG---HLLSGIMDKGQIGPAAGGLINGIYEAYGETIAGRALSIIGRLLTKMLHMR 839 Query: 636 GASVGIDDMVIPEK----KHEIISEAEAEVAEIQEQF--------QSGLVTAGERYNKVI 683 S G++D+++ E+ + E + +AE EI ++ R V+ Sbjct: 840 AFSCGVEDLILTEEGDRARLEELRKAEKLGFEIASKYVTLDAEKIDPTNPELRRRLEAVL 899 Query: 684 DIWAAAN--DRVSKAMMDNLQTETVIN-RDGQEEKQVSFNSIYMMADSGARGSAAQIRQL 740 + D ++ + + + K+ N + M SGA+GS Q+ Sbjct: 900 RDDTKQHGLDLLTNTANSKISSAVTAAVLPDKLIKKFPKNQMQAMTGSGAKGSMVNANQI 959 Query: 741 AGMRGLM--------------AKPDGSIIET------PITANFREGLNVLQYFISTHGAR 780 + G P ET I F G+ +Y+ R Sbjct: 960 SCNLGQQVLEGRRVPVMISGKTLPCFKPFETSVRAGGYIVNRFLTGIRPQEYYFHMMAGR 1019 Query: 781 KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVL 840 +GL DTA+KT+ SGYL R ++ + L V D M + G D + + + L Sbjct: 1020 EGLIDTAVKTSRSGYLQRCIIKGMEGLRVEYDTSVRDADGTMVQFLYGEDGLDTTKQKYL 1079 Query: 841 G-----------------------RVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSV 877 RV + + ++ R + Sbjct: 1080 NDFKFQAQNFYSLAQTLHTAEAYPRVASAEAVEHNKKAAKKARKGDVTSMDPATAVYTPS 1139 Query: 878 DAVKVRSVVSCDTDFGVC------------AHCYGRDLAR-----------GHIINKGEA 914 S + C G L R ++ GEA Sbjct: 1140 RHSGSTSELFLQAKREYCDTNPDKLLKLKKQDPEGEILKRTFEQMLDLKYLRSLVEPGEA 1199 Query: 915 IGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKN 954 +GV+A QSIGEP TQ+T+ TFH+ G +++ +++ Sbjct: 1200 VGVVAGQSIGEPSTQMTLNTFHLAGHSAKNVTLGIPRLRE 1239 Score = 61.3 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 55/164 (33%), Gaps = 42/164 (25%) Query: 1201 GERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM 1260 G ++ +++ +LR+ GV A IV E+ +V+ G+ ++ +H+ +I Sbjct: 1577 GHIIDVNRTLTN---DIAAMLRIYGVEAGRATIVREMHNVFSGHGISVDHRHLNLIAD-- 1631 Query: 1261 LRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFI 1320 + G L G S Sbjct: 1632 ------------------------------TMTKGGGFTPFSRIGLKG-------NVSPF 1654 Query: 1321 SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 SF+ T L +A + DEL+ ++VGRL GTG Sbjct: 1655 MKMSFETTVGFLKDAVLERDWDELKNPSARIVVGRLGGIGTGAF 1698 Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 19/109 (17%) Query: 9 KAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDY 68 Q + + ++ + I++ S + P T + P GL + + + Sbjct: 3 THQPTSSAINGVEFGFLTTKDIKALSVKRISIPTTFDSINH-PVPGGLHDPALGAFLDNP 61 Query: 69 ECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFL 117 C CG +T GHIEL P H+ F+ Sbjct: 62 ----------------CATCG--LTTFLGCPGHCGHIELPVPVYHLTFM 92 >UniRef50_Q0D0E1 DNA-directed RNA polymerase n=23 Tax=Leotiomyceta RepID=Q0D0E1_ASPTN Length = 1691 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 181/906 (19%), Positives = 331/906 (36%), Gaps = 174/906 (19%) Query: 235 EWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRN---NRLKRLLDLAAPDII 291 + + + V P RP G + N +++ N++ + D I Sbjct: 377 DMFFIKSILVPPNKYRPAAIQGAGEIMEAQQNTPLTQILKNCDIINQISKERQNGGSDSI 436 Query: 292 --VRNEKRML------QEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLL 343 VR+ + +L Q+ V+ L+D R G + + +++ K+G FR+N++ Sbjct: 437 TRVRDYRDLLHAIVQLQDTVNGLIDRDRSGLSGAAVAGA-ANGIKQILEKKEGLFRKNMM 495 Query: 344 GKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKM--- 400 GKRV+++ RSVI+ P + ++ G+P A +L P + + Sbjct: 496 GKRVNFAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTNHNFWEMKQAVINGPDKYPG 555 Query: 401 ---VEREEAVV-------------------------------WDILDEVIREHPVLLNRA 426 +E E V + + VL+NR Sbjct: 556 AAAIENELGQVTNLKFKSLDERTALANQLLAPSNWRMKGSRNKKVYRHLTTGDVVLMNRQ 615 Query: 427 PTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMM 485 PTLH+ I + ++ + I++H C YNADFDGD+M +H P A+ EA L Sbjct: 616 PTLHKPSIMGHKARVLSNERVIRMHYANCNTYNADFDGDEMNMHFPQNELARAEAMMLAD 675 Query: 486 STNNILSPANGEPIIVPSQDVV-LGLYYMTRDCVNAKGEGM-VLTGPKEAERLYRSGLAS 543 + + L +G+P+ QD + +G ++ RD + + +L E + ++ Sbjct: 676 ADHQYLVATSGKPLRGLIQDHISMGTWFTCRDSFFDEEDYHELLYSCLRPENAHT--ISD 733 Query: 544 LHARVKVRITEYEKDANGELVAKTSLKDTTV---------------------GRAILWMI 582 V + + ++ G+ + T LK+ G +I Sbjct: 734 RIQLVGPTVIKPKRLWTGKQIITTILKNIMPSERAGLNLKSKSSTPGDRWGKGNEEGDVI 793 Query: 583 VPKGLPYSIVNQALGKKAI----SKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGAS 638 G ++ L KK I ++++ + I G + + + Sbjct: 794 FKDG---EMLCGILDKKQIGPTAGGLIDSIHEIYGHTIAGKLIGILGRLLTRFLNMRAFT 850 Query: 639 VGIDDMVIPEK----KHEIISEAEAEVAEIQEQFQSGLVTAGE--------RYNKVIDIW 686 GIDD+ + ++ + E +S+A E+ ++ + T R +V+ Sbjct: 851 CGIDDLRLTKEGDRVRKEKLSQAPKIGREVALKYVTLDQTTVPDLDAELRRRMEEVLRDD 910 Query: 687 AAAN--DRVSKAMMDNLQTE-TVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGM 743 + D V+ + L TE T G K +N + M SGA+GS+ ++ Sbjct: 911 EKQSGLDSVTNSQTAKLSTEITKACLPGGLVKPFPWNQMQSMTISGAKGSSVNANLISCN 970 Query: 744 RGLM--------------AKPDGSIIET------PITANFREGLNVLQYFISTHGARKGL 783 G P +T ++ F G+ +Y+ R+GL Sbjct: 971 LGQQVLEGRRVPVMISGKTLPSFRAFDTNPMAGGYVSGRFLTGIKPQEYYFHAMAGREGL 1030 Query: 784 ADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTH-EGIMMTPVIEGGDVKEPLRDRVLGR 842 DTA+KT+ SGYL R L+ + L D + + G D + + L R Sbjct: 1031 IDTAVKTSRSGYLQRCLIKGMEGLRAEYDTSVREASDGSIIQFLYGEDGLDITKQVQLKR 1090 Query: 843 VTAEDVLKPGTADILVPRN--TLLHEQWCDLLEENSVDAV-KVRSVVSCDTDFGVCAHC- 898 D L I+ N + H + + DA+ KVR D V AH Sbjct: 1091 ---FDFLASNHKSIMSQVNLRSDYHNLEKEEVANWHKDAMKKVRKSGKVDAMDPVLAHYH 1147 Query: 899 --------------------------YGRDLARG--------------------HIINKG 912 Y +D +G +++ G Sbjct: 1148 PGGNLGSVSEAFSQALKKYEDENKDGYLKDKKKGVDGFLSKKAFDTLMNMKYLKSVVDPG 1207 Query: 913 EAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGK 972 EA+G++A+QSIGEP TQ+T+ TFH+ G +++ +++ I ++ +++ + Sbjct: 1208 EAVGIVASQSIGEPSTQMTLNTFHLAGHSAKNVTLGIPRLR---EIVMTASANIMTPTMT 1264 Query: 973 LVITSR 978 LV+ Sbjct: 1265 LVLNEE 1270 Score = 59.7 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 57/169 (33%), Gaps = 40/169 (23%) Query: 1196 LNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEV 1255 L + + + + + + H +L+ GV A IV E+ DV+ + ++++H+ + Sbjct: 1556 LAMRDYQDIIKPHSLYTNSI--HHMLQFYGVEAARASIVREMSDVFEGHSISVDNRHLNL 1613 Query: 1256 IVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLA 1315 I M +G A L+ Sbjct: 1614 IGDVMT--------------------------------QSGGFRAFNRNGLV------KD 1635 Query: 1316 TESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 S + SF+ T L EA + D LR ++VGR GTG Sbjct: 1636 GTSPFAKMSFETTVGFLKEAVIERDFDNLRSPSSRIVVGRPGIVGTGAF 1684 >UniRef50_B0XG16 DNA-directed RNA polymerase n=3 Tax=Diptera RepID=B0XG16_CULQU Length = 1692 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 192/1054 (18%), Positives = 353/1054 (33%), Gaps = 230/1054 (21%) Query: 20 IKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLK 79 ++ A+ S + I+ S ++ P + + GL+ A + GP Sbjct: 16 LQFAVFSDEDIKRMSVTKIVTPRSFD-DLGNSIPGGLYDAAM-GPSG------------- 60 Query: 80 HRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDM--------P 131 R +C C ++ Q + GHIE+ P + +F+K++ + + + + P Sbjct: 61 -RSEVCATCVKDMAQCE---GHFGHIEICLPVFNPFFIKTVYNLLRISCNACHRLQMSDP 116 Query: 132 LRDI-----------------------------------ERVLYFESYV----------- 145 L+++ E V Y+ + Sbjct: 117 LKELLQLQLQLVDAGYIVEAEELEMFKAKVCANPTEPLPEAVAYYSELLMNHPYNKLANT 176 Query: 146 ---------VIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKS----- 191 ++ + + R+ ++ ++ + + M ++A + Sbjct: 177 KNSEAIRTSIVNSTLRDCVRKICISCKEAIQKVRVSNKRLVFSMTRAEMRAFYEKQGKTE 236 Query: 192 MDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQ-------SGNKP-EWMILTVLP 243 + E+ ++ L E ++ R+ KLL + P + + V+P Sbjct: 237 IPDEKTKATVKVVLAEEAQKSFRELYANDGKLLTLLFPIMATSSATMRHPVDLFFMNVIP 296 Query: 244 VLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLL--------DLAAPDIIVRN- 294 V PP +RP+ ++G + R ++ N L+ +L L A D+ ++ Sbjct: 297 VQPPLVRPVRRVEGQEILEHPQTTILRNILMANAVLRSILVMSTKDDEALGAMDVEMKKV 356 Query: 295 ---------------EKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFR 339 LQ VD LD G L +I+ K+G R Sbjct: 357 YESAKGGTGLEKLYLAWIDLQNFVDQSLDINMSQEKQKGRGC----GLKQIIEKKEGLVR 412 Query: 340 QNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI----- 394 +++GKRV+Y+ R+VIT P + + + G+P A L P + L + Sbjct: 413 MHMMGKRVNYAARTVITPDPNIGVDEIGIPITFAKRLTYPVPVTPWNVAELRKMVINGPD 472 Query: 395 -KAAKKMVEREEAVV-----------------------------WDILDEVIREHPVLLN 424 MVE V + ++ +LLN Sbjct: 473 GYPGANMVEDSNGQVSRISGHNATHRESMAKTLLTPHSSNQQGVKIVHRHLLSGDVLLLN 532 Query: 425 RAPTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARAL 483 R PTLHR I A + ++ G K +LH C +YNADFDGD+M H P + A+ EA L Sbjct: 533 RQPTLHRPSIMAHKAKILPGEKIFRLHYSNCKSYNADFDGDEMNAHFPQSELARSEAYNL 592 Query: 484 MMSTNNILSPANGEPIIVPSQDVVLGLYYM-TRDCVNAKGEGMVL--------------T 528 + + L P +G P+ QD ++ + R + + L Sbjct: 593 VAVPHQYLVPKDGTPLGGLIQDHIVSAVKLFIRGKFFNRDDYQQLVFQALSNHRGDIELL 652 Query: 529 GPKEAERL-YRSGLASLHARVKVRITEYEKDAN--GELVAKTSLKDTTVGRAILWMIVP- 584 P + SG + VK I N G T R P Sbjct: 653 PPTILKPARLWSGKQIISTIVKNIIPRGMPHINMIGTSKLGNKHWQTAPPRPWTAGGTPL 712 Query: 585 --------------KGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFA 630 L I+++ +++ Y + G + + + Sbjct: 713 TGNQMSESEVFIRNGELLVGILDKNHFGATPYGLIHCMYELYGGNCSTLLLSSLSRLFTY 772 Query: 631 YAARSGASVGIDDMVIPEKKHEIISEAEAEVAEI-----------QEQFQSGLVTA--GE 677 Y G ++G+ D+++ ++ + ++ E +I ++ A E Sbjct: 773 YLQWEGFTLGVRDILVQKQADKKRTKIIQECRKIGHSAAAAALDLPPDVSPEVLNAKMEE 832 Query: 678 RYNKVIDIWAAANDRVSKAMMDNLQTE-TVINRDGQEEKQVSFNSIYMMADSGARGSAAQ 736 Y K + A DR K+ +D + + N++ +M SGA+GS Sbjct: 833 AYAKD-PKFRAILDRQYKSALDPFNNQINEACIPDGLISKFPDNNLQLMVQSGAKGSTVN 891 Query: 737 IRQLAGMRGLM--------------AKPDGSIIET------PITANFREGLNVLQYFIST 776 Q++ + G + + P + ET I F G+ +F Sbjct: 892 TMQISCLLGQIELEGKRPPLMISGKSLPSFASFETSPKSGGFIDGRFMTGIQPQDFFFHC 951 Query: 777 HGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLR 836 R+GL DTA+KT+ SGYL R LV + L V D + + G D + + Sbjct: 952 MAGREGLIDTAVKTSRSGYLQRCLVKHLEGLNVNYDMTVRDSDNSVVQFMYGEDGMDISK 1011 Query: 837 DRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCD 870 + + L I+ P + ++ + Sbjct: 1012 AQFIETSKQLRFLDLNRDAIVRP---EITKKLVN 1042 Score = 68.2 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 3/89 (3%) Query: 906 GHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKS 965 G + GE +G++AAQSIGEP TQ+T+ TFH G +++ I + ++ Sbjct: 1180 GALAAPGEPVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLR---EILMLASRN 1236 Query: 966 VVNSSGKLVITSRNTELKLIDEFGRTKES 994 + S ++ + KL R + + Sbjct: 1237 IKTPSMEIPFKPHKSAKKLEAIAERMRRT 1265 Score = 68.2 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 62/158 (39%), Gaps = 39/158 (24%) Query: 1214 PEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD 1273 + + + G+ A +R IV EVQ+V+++ G++IN +H+ ++ M Sbjct: 1573 SNDIYAVAQTYGIEAASRVIVKEVQNVFKVYGIEINPRHLLLVADYMTA----------- 1621 Query: 1274 FLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLT 1333 +G SR K A S + SF+ + + L Sbjct: 1622 --DGTFKSLSR--------------------------KGMEANVSPLQQISFESSIQFLK 1653 Query: 1334 EAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMR 1371 A + G D L ++VG+L +GTG ++++ Sbjct: 1654 AATLKGNGDHLDSPSSRLMVGKLCKSGTGSFGLYNQIK 1691 >UniRef50_O78483 DNA-directed RNA polymerase subunit beta'' n=2 Tax=Pyrenomonadales RepID=RPOC2_GUITH Length = 1286 Score = 460 bits (1184), Expect = e-127, Method: Composition-based stats. Identities = 207/701 (29%), Positives = 343/701 (48%), Gaps = 54/701 (7%) Query: 580 WMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASV 639 ++ VP ++ N+ + KK + K++ + G AD+I GF YA ++G S+ Sbjct: 5 YLFVPPKPKFT--NKVIDKKELKKLMAWAFSNYGTGRASFMADKIKDLGFHYATKAGLSL 62 Query: 640 GIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMD 699 ++D+ +P K +++ +A E+ + ++ ++ G +T ER+ KVID W ++++ ++ Sbjct: 63 SVEDLRVPPIKRDLLLQANREIQQTEQLYERGEITTIERFQKVIDTWNNTSEQLKDEVIK 122 Query: 700 NLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPI 759 + N IY+MA SGARG+ +Q+RQL GMRGLMA P G II+ PI Sbjct: 123 YFKQND------------PLNPIYIMAFSGARGNISQVRQLVGMRGLMADPQGQIIDLPI 170 Query: 760 TANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEG 819 +NFREGL V +Y IS++GARKGL DTAL+TA+SGYLTRRLVDVAQD+++ E DCGT G Sbjct: 171 KSNFREGLTVTEYLISSYGARKGLVDTALRTADSGYLTRRLVDVAQDIIIREIDCGTQRG 230 Query: 820 IMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDA 879 I++ +++ + L++R++GRV E + P A ++ N L + + + + + Sbjct: 231 IVLRDMVDNNQILVSLKNRLIGRVLFETLYLPNDASVIGHINQDLDHDITNSIIKCGIKS 290 Query: 880 VKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGG 939 V VRS ++C+ VC CYG +LA G +++ GEA+G+IAAQSIGEPGTQLTMRTFH GG Sbjct: 291 VIVRSPLTCEAPRSVCQFCYGWNLAHGSLVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGG 350 Query: 940 AASRAAAESSIQVKNKGSIKLS---NVKSVVNSSGKL-VITSRNTELKLIDEFGRTKESY 995 + AE I+ G I+ ++ + G VI N +L ++++ G K Sbjct: 351 VFTGELAE-QIRAPFNGIIRYPKNLKIRIIRTRHGNEGVILDENYKLNILNQRG-EKTRL 408 Query: 996 KVPYGAVLAKGDGEQVAGGETVAN--------WDPHTMPVITEVSGFVRFTDMIDGQTIT 1047 + G L D E+ G+ + + T ++TE SG V +T++ I Sbjct: 409 EFKQGTTLFISDNEEFKKGQIIGETKSRSTLVTEKATRDLVTETSGEVIYTNLNIENKID 468 Query: 1048 RQTDE--LTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKA 1105 RQ + +T L+ + + + LKI D D +I ++Y Sbjct: 469 RQGNSTLITNKGGLLWILKGDVYNIPYNTDIQLKIGDKIAKDTIISTFKTISEY----NG 524 Query: 1106 IVQLEDGVQISSGDTLARIPQESG-----GTKDITGGLPRVADLFEARRPKEPAILAEIS 1160 IV+L + + L D+ P + + +L Sbjct: 525 IVRLNE--KNEEIQILTDFISLENAEIEYNELDVNIECPINLRFEDGKILN---LLCVPG 579 Query: 1161 GIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDI 1220 ++ + G + + ++ +G + +VI PE H+I Sbjct: 580 NKITNSQVIGEYIEDNYKTTTGGIIKYKNYAELKKEKNKKGYEINDNEVIYWIPEETHEI 639 Query: 1221 LRLRGVHAVT-RYIVNE----VQDVYRLQGVKINDKHIEVI 1256 + + + ++N ++DVY L N ++E+I Sbjct: 640 NKDLSLLLIKNNTLINSGTEIIKDVYCL-----NSGYVEII 675 Score = 329 bits (844), Expect = 5e-88, Method: Composition-based stats. Identities = 147/499 (29%), Positives = 232/499 (46%), Gaps = 48/499 (9%) Query: 940 AASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVP- 998 +R+ + ++K+ + L +VN + S + E I+ + K + + Sbjct: 764 VVNRSLYKDGEKIKSVYGLDLVKTYLIVNFNSNKPYASADIEFAPIENSTKYKLNLTITE 823 Query: 999 --------YGAV--------LAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMID 1042 +GA+ L DG+++ + +A ++ G ++ + Sbjct: 824 SIQLNYDIFGAINNEDVKTSLVIKDGQRIKKEDLIAE-----THLVARNKGILKNILISS 878 Query: 1043 GQTITRQTDELTGLSSLVVLDSAERTAGGK-----DLRPALKIVDAQGNDVLIPGTDMPA 1097 T + ++ + + G D I G I ++ Sbjct: 879 QSTKKLLIMREEDTFRVPTNNATIQVSRGDLVKYGDQLAGSVIASESGQVFEITKNEIIL 938 Query: 1098 Q----YFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEP 1153 + Y + AI+Q++D + DTLA + E T DI GLPR+ ++ EAR+PKEP Sbjct: 939 RKAYPYLVSAGAILQIKDHELVQRNDTLAILVFERSKTGDIVQGLPRIEEILEARKPKEP 998 Query: 1154 AILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDG 1213 L++ G ++ + + DG + +I ++L + GE V + ++DG Sbjct: 999 CKLSQKPGKINTTNSNDETEVIQLIDTDGY-TTDYIINNNQKLIISNGENVLLAEPLTDG 1057 Query: 1214 PEAPHDILRL----------------RGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIV 1257 PH++L L + V Y+V+EVQ VY+ Q V I+DKHIEVIV Sbjct: 1058 APNPHEMLNLYFNFYTSIITLYESAKLSLQKVQTYLVDEVQKVYQSQNVDISDKHIEVIV 1117 Query: 1258 RQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATE 1317 RQM K + + G + L GE VE +++ N + V ATY LLGITKASL T+ Sbjct: 1118 RQMTSKVKVEDGGDTTLLPGELVELQQIENINEAMMLTKGVPATYCPILLGITKASLNTD 1177 Query: 1318 SFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGE 1377 SFISAASFQETTRVLTEAA+ GK D LRGLKENVI+GRLIPAGTG+ + ++ + + + Sbjct: 1178 SFISAASFQETTRVLTEAAIEGKADWLRGLKENVIIGRLIPAGTGFNAYNEQHKSSKSMK 1237 Query: 1378 APAAPQVTAEDASASLAEL 1396 P +S + + Sbjct: 1238 LTGIPDTYYLSSSLEVEDS 1256 >UniRef50_A2C6T1 DNA-directed RNA polymerase subunit beta' n=46 Tax=cellular organisms RepID=RPOC2_PROM3 Length = 1374 Score = 458 bits (1178), Expect = e-127, Method: Composition-based stats. Identities = 189/548 (34%), Positives = 294/548 (53%), Gaps = 62/548 (11%) Query: 588 PYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIP 647 P N+ + KKA+ +++ Y+ G T AD + GF YA ++ S+ ++D+ +P Sbjct: 44 PPQFRNRVVDKKALKQLVAWAYKTHGTAVTASMADNLKDLGFRYATQAAVSISVEDLKVP 103 Query: 648 EKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVI 707 E K +++ +AEA++ +E ++ G +T ER+ KVID W N+R+ A+ N Sbjct: 104 EAKQDLLCQAEAQITATEECYRLGEITEVERHTKVIDTWTETNERLVDAVKKNFNQND-- 161 Query: 708 NRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGL 767 NS++MMA+SGARG+ +Q+RQL GMRGLMA P G II+ PI NFREGL Sbjct: 162 ----------PLNSVWMMANSGARGNMSQVRQLVGMRGLMANPQGEIIDLPIRTNFREGL 211 Query: 768 NVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIE 827 V +Y IS++GARKGL DTAL+TA+SGYLTRRLVDVAQD++V EDDCGT GI + V + Sbjct: 212 TVTEYVISSYGARKGLVDTALRTADSGYLTRRLVDVAQDVIVREDDCGTTRGI-IVKVED 270 Query: 828 GGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVS 887 GG R++GR+TA+ V+ +IL RNT + E+ ++ V VRS ++ Sbjct: 271 GGFG-----SRLVGRLTADQVVN-VDGEILAERNTEIDPPLSKRFEKAAITEVMVRSPLT 324 Query: 888 CDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAE 947 C+ + VC CYG LA + + GEA+G+IAAQSIGEPGTQLTMRTFH GG ++ A Sbjct: 325 CEANRSVCRKCYGWALAHNELADLGEAVGIIAAQSIGEPGTQLTMRTFHTGGVST--AET 382 Query: 948 SSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKL---IDEFGRTK-ESYKVPYGAVL 1003 ++ G+++ V + ++ +E+ + G+ + + + G++L Sbjct: 383 GVVRSTVAGTVEFGPKARVRGYRTPHGLEAQQSEVDFTLTVKPSGKGRAQRIDITTGSLL 442 Query: 1004 AKGDGEQVAGGETVA---------NWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELT 1054 DG+++ TV + + T VI +++G VR+ +I + + Sbjct: 443 FVSDGQEIEADVTVVQIASVAVKKSVEKATKDVICDLAGQVRYEQVIQPREV-------- 494 Query: 1055 GLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQ 1114 KD + + + + + + D+ Y LP A ++ V+ Sbjct: 495 -----------------KDRQGNITLKAQRLGRLWVLAGDV---YNLPPNAEPVVQGNVK 534 Query: 1115 ISSGDTLA 1122 + G LA Sbjct: 535 VERGQVLA 542 Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats. Identities = 164/491 (33%), Positives = 245/491 (49%), Gaps = 53/491 (10%) Query: 928 TQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDE 987 TQL + TF + ++ K++ +LVI E L+ Sbjct: 826 TQLILETFDTTPQMTVDVEA----------VRDKRAKTIERL--RLVIL----ESILVRR 869 Query: 988 FGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTIT 1047 + S+ + L DG+ V + VA T ++ + G + +G + Sbjct: 870 DTISDSSHGSTH-TELQIEDGQSVKASDVVA-----TTQILCKQEGIAQLPVPQEGDPVR 923 Query: 1048 R---QTDELTGLSSLV---VLDSAERTAGGKDL---RPALKIVDAQGNDVLIPGTDMPAQ 1098 R + DE T + ++ +R G L P+ + + + + Sbjct: 924 RLIVERDEDTITVTTKGSPLVGVGQRLVDGDSLAKDEPSSCCGEVEEVEGKAITLRLGRP 983 Query: 1099 YFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAE 1158 Y + +++ + DG + GD LA + E T DI GLPR+ +L EARRP+E A+L + Sbjct: 984 YMVSPDSVLHVRDGDLVQRGDGLALLVFERQKTGDIVQGLPRIEELLEARRPRESAVLCK 1043 Query: 1159 ISGIVSFGKETKGKRRLVITPVDGSDPY-EEMIPKWRQLNVFEGERVERGDVISDGPEAP 1217 G V K+ + + +T ++ D E I R + V G++V G++++DGP P Sbjct: 1044 KPGTVEI-KQGEDDESITVTVIEADDAIGEYPILLGRNVMVSNGQQVHAGELLTDGPINP 1102 Query: 1218 HDILR-----LRG-----------VHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQML 1261 H++L LRG + + +V EVQ+VY+ QGV I+DKHIEVIVRQM Sbjct: 1103 HELLDCFFEDLRGRKPLMDAAQEAIAKLQHRLVTEVQNVYKSQGVSIDDKHIEVIVRQMT 1162 Query: 1262 RKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFIS 1321 K I +AG + L GE +E +V+ N+ + G + ++ LLGITKASL T+SFIS Sbjct: 1163 SKVRIEDAGDTTLLPGELIELRQVEDTNQAMAITGGAPSEFTPVLLGITKASLNTDSFIS 1222 Query: 1322 AASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAA 1381 AASFQETTRVLTEAA+ GK D LRGLKENVI+GRLIPAGTG++ Q+ +R EA Sbjct: 1223 AASFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLIPAGTGFSGFQEELR----AEAGPH 1278 Query: 1382 PQVTAEDASAS 1392 P + AED + Sbjct: 1279 PDILAEDPAGY 1289 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 59/284 (20%), Positives = 103/284 (36%), Gaps = 41/284 (14%) Query: 956 GSIKLSNV---KSVVNSSGKLVITSRN-TELKLIDEFGRTKESYKVPYGAVLAKGDGEQV 1011 G ++ V + V + G + + ++ L ++ Y +P A +V Sbjct: 481 GQVRYEQVIQPREVKDRQGNITLKAQRLGRLWVLAGD-----VYNLPPNAEPVVQGNVKV 535 Query: 1012 AGGETVANWDPHTMPVITEVSGFVRFTDMI-DGQTITRQTDELTGL-----------SSL 1059 G+ +A +E G VR D I D + + T +T L Sbjct: 536 ERGQVLAE-----ASQASEFGGEVRLRDSIGDSREVQIVTTSMTMKDFKLLGESTHSGEL 590 Query: 1060 VVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQ------YFLPGKAIV---QLE 1110 L++ E T + P KI G V D F PG AI + Sbjct: 591 WHLEAKEGTRYRLNTIPGSKI--GNGEVVAELADDRFRTQTGGLVRFAPGLAIKKARSAK 648 Query: 1111 DGVQISSGDTLARIPQES-GGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKET 1169 +G +++ G TL IPQE+ KDI+ + EA I ++ +GIV+ ++ Sbjct: 649 NGFEVNKGGTLLWIPQETHEINKDISLLMIEDGQWIEAGTEVVKDIFSQTAGIVTVTQKN 708 Query: 1170 KGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDG 1213 R +++ E + + +G+ V G+ I+ G Sbjct: 709 DILREIIVRSGSFHLCAETKALERFR---GDGQIVNPGETIAKG 749 >UniRef50_UPI0001924CE1 PREDICTED: similar to DNA-directed RNA polymerase II largest subunit (RNA polymerase II subunit 1) (B220) n=1 Tax=Hydra magnipapillata RepID=UPI0001924CE1 Length = 1416 Score = 458 bits (1177), Expect = e-126, Method: Composition-based stats. Identities = 170/888 (19%), Positives = 309/888 (34%), Gaps = 141/888 (15%) Query: 14 TEEFDAIKIALASPDMIRSWSFGE----VKKPETINYRTFKPERDGLFCARIFGPVKDYE 69 + I+ + S IR+ S V+ P+ + + +P+R GL R+ G Sbjct: 13 IKPIKEIEFDILSNHEIRAMSSLADTHGVEFPDLYDKQ--EPKRGGLIDQRMGG------ 64 Query: 70 CLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLD 129 IC C ++ HI+LA P +I + + L S I Sbjct: 65 ----------QGNNICATCQLDGKYCD---GHPAHIDLAEPVFNILYYQYLTSIIECF-- 109 Query: 130 MPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALL 189 +L + ++ + + E + LDA ++ G Sbjct: 110 --CLGCSHLLVSKETDKLKQALKATSAITVYAETETLDADDKGG---------------- 151 Query: 190 KSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDL 249 + ++ R L ++ + S ++P MI + V P + Sbjct: 152 ------ADKKKQRIILTPEIISEMLDNISDEDCRIIGMDPSRSRPSDMIHKIFHVPPVHV 205 Query: 250 RPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIV--RNEKRMLQEAVDALL 307 RP + GG L +I N R+ + + + ++ +LQ Sbjct: 206 RPSLRNTGGLSVEDCLTHKLADIIKANTRINKQKETNNENSNKYSKDHAHLLQYHCATYY 265 Query: 308 DNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCG 367 D K L D KGK GR R N+ GKR +++ R+VIT + +Q G Sbjct: 266 DPNIISVPKADGKGTQFKPLVDRYKGKPGRIRGNIQGKRGNFNARTVITPDQTIASNQIG 325 Query: 368 LPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAV-------------------- 407 +P K+A+ + P + L ++ V Sbjct: 326 VPIKIAMNVTFPEFVTEYNYDRLTQLVRNGPDKYPGANFVYKTSNMQTTNKQLYLKPIKE 385 Query: 408 -----VWDILDEVIR-EHPVLLNRAPTLHRLGIQAFEPVLIEGK---AIQLHPLVCAAYN 458 DI++ ++ VL+NR PTLH+ + V+I + +L V Y Sbjct: 386 TVVLQYGDIVERHLQDGDVVLVNRQPTLHKQSMMGHRIVVIHDESLLTFRLSLSVTTPYA 445 Query: 459 ADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCV 518 ADFDGD+M +H+P +++ Q+E + I+ PA I QD +LG Y +T D Sbjct: 446 ADFDGDEMNIHIPQSIQTQIELEEITDVKKQIIMPAKSVTIYGLVQDGLLGTYNLTDDRT 505 Query: 519 NAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAI 578 ++A + ++ E K+ G + + R Sbjct: 506 KINW--------RDAMNIMSYTTFDDFSK-----FEKNKEYTGSELFSMIVPPRVTMRIG 552 Query: 579 LWMIVPKGLPYSIVNQA-LGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGA 637 I L VN + +G K + +L+ + G T+ F D + +G Sbjct: 553 EVDIKNGDLVRGRVNNSVIGAKKKNNLLHYIWDEYGEDATINFIDNCQKLSDNFNLWNGF 612 Query: 638 SVGIDDMVIPEK--------KHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAA 689 +V D +P K ++I++ ++ I+ G + +K+ + Sbjct: 613 TVSAKDSQVPLKTKIEIEKYIEDVINKVNIDITNIEN--NPGYMNVENFESKIREDINVV 670 Query: 690 NDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMR----- 744 D VSK + ++ + N+ +M SG++G + Q+ G Sbjct: 671 RDDVSKIALGSVGKD---------------NNFNVMMTSGSKGGLNNLGQMIGCVGFQDF 715 Query: 745 --GLMAK-------------PDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALK 789 GLM K D + +F +GL+ ++ T R L T +K Sbjct: 716 EGGLMPKMYNDRTLCYFHEHDDRAKSRGLCYNSFMDGLSYSEFCYHTKACRAALITTVVK 775 Query: 790 TANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRD 837 T+++GY R+L +D+++ D + + GG+ + Sbjct: 776 TSDAGYANRKLGKTMEDVMIKYDGTARIANNQIIQLNYGGNSNDTTMQ 823 Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 50/252 (19%), Positives = 89/252 (35%), Gaps = 45/252 (17%) Query: 1158 EISGIVSFGKETKGKRRLVITPVDGSDPY--EEMIPKWRQLNVFEGERVERGDVISDGPE 1215 ++ GI S + + I DG+ EE + +N+ + + D+ Sbjct: 1185 KLKGIDSINRINAVSKERYIDAADGNSMKIGEEYVIYTAGVNLNDIRYITGIDLYRTYSN 1244 Query: 1216 APHDILRLRGVHAVTRYIVNEVQDVYRLQG-VKINDKHIEVIVRQMLRKATIVNAGSSDF 1274 + L+ G+ I+ E Y G IN +HI ++V M Sbjct: 1245 DIIETLKTFGIEFARNRILTEFLKAYENAGNTGINPQHISILVDIM-------------C 1291 Query: 1275 LEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTE 1334 G + R G+ KA++ ++ ASF+++ VLT Sbjct: 1292 YGGTVISADR----------------------HGMMKANID---PLTKASFEKSIDVLTS 1326 Query: 1335 AAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQVTAEDASASLA 1394 AAV G D ++G+ + +G + GTGY + + E + + Sbjct: 1327 AAVFGDIDRMQGVSSRIYIGSVFKGGTGYC----ELVLDTQMIQNSEYVEKTEMSESGYV 1382 Query: 1395 ELLNAGLGGSDN 1406 + GLG S+N Sbjct: 1383 GAADKGLGTSNN 1394 Score = 50.9 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 5/98 (5%) Query: 868 WCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPG 927 D L V+ S D+ C+ +I+ GE +G+IAA ++GE Sbjct: 972 LYDALSPKIVNEKHKISKEIFDSIIDEIKTCF-----NDNIVEPGEMVGIIAAGALGEAV 1026 Query: 928 TQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKS 965 TQ T+ TFH G AS + + N+ N K+ Sbjct: 1027 TQTTISTFHHSGIASLTHSTVGVPRINELIGATKNPKT 1064 >UniRef50_A5BD07 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera RepID=A5BD07_VITVI Length = 1350 Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats. Identities = 173/885 (19%), Positives = 301/885 (34%), Gaps = 176/885 (19%) Query: 235 EWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRN 294 L + V P RP L +V+ N L + + + Sbjct: 453 SMFFLETILVPPIKFRPPSK-GQISVMEHPQTVLLGKVLQANIALGNAHANNSERSKIIS 511 Query: 295 EKRMLQEAVDALLDNGRRGRAITGSNKRPL-KSLADMIKGKQGRFRQNLLGKRVDYSGRS 353 LQ++++ L D G+ G +R + +++ K+G FRQ ++GKRV+++ RS Sbjct: 512 RWMDLQQSINVLFD----GKTAAGQGQRDTGSGICQLLEKKEGVFRQKMMGKRVNFACRS 567 Query: 354 VITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAA---------------- 397 VI+ PYL +++ G+P AL L P + L I Sbjct: 568 VISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVVKLRDAIINGPEIHPGATHYVDKLST 627 Query: 398 ------KKM-------VEREEAVVWD-------------ILDEVIREHPVLLNRAPTLHR 431 KKM + VV + + VL+NR PTLH+ Sbjct: 628 VKLAVNKKMRISISRKLPSSRGVVAQPGRSSDNEFEGKIVYRHLQDGDIVLVNRQPTLHK 687 Query: 432 LGIQAFEPVLIEG-KAIQLHPLVC------------------AAYNADFDGDQMAVHVPL 472 I A +++G K +++H C + YNADFDGD+M VH P Sbjct: 688 PSIMAHVVRVLKGEKTLRMHYANCRVESEHISMLDLDDCSDSSTYNADFDGDEMNVHFPQ 747 Query: 473 TLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKE 532 ++ EA ++ + N + P+ G+PI QD ++ +T+ E Sbjct: 748 DEISRAEAYNIVNANNQYIVPSRGDPIRGLIQDHIVSAVLLTKKDTFLTREQYNQLLYSS 807 Query: 533 AERLYRSGLASLHAR-------------VKVRITEYEKDANGELVAKTSLKDTTVGRAIL 579 + + I + E +G+ V L T GR Sbjct: 808 GLSSGSGSFIGKPGKKVSVLDSEDEMQPLLPAIWKPEPLWSGKQVITAVLNHITRGRKPF 867 Query: 580 W----MIVPKGLPYSIVNQALGKK------------------------------------ 599 +P+ S +++ K Sbjct: 868 TTEKDGKIPREYFGSEIDEKKSGKGKDPGSDRRKEKRIEKKHGEYKLLIHKNELVRGVID 927 Query: 600 ----AISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEK-----K 650 +++ + G I + + G + G+DD++I K Sbjct: 928 KAQFDKYGLVHMVQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDDLLISPNYDIARK 987 Query: 651 HEIISEAEAEVAEIQEQF---QSGLVTAGERYNKVIDI-----WAAAN--DRVSKAMMDN 700 E+ ++E + +F G + + +V I AA DR+ K ++ Sbjct: 988 IEL-DKSENIGELVHCKFIGSNHGKIDPVKLQVEVEKIILSNGEAAITRLDRMMKNELNE 1046 Query: 701 LQTETVINRDGQ-EEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM--------AKPD 751 L ++ + + K N + +M +GA+GS Q++ G Sbjct: 1047 LTSKVNKDLLLKGLVKPFPKNCLSLMTTTGAKGSTVNFSQISSFLGQQDLEGKRVPRMVS 1106 Query: 752 GSIIE------------TPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRR 799 G + I+ F GL+ +Y+ R+GL DTA+KT+ SGYL R Sbjct: 1107 GKTLPCFPPWDCAARAGGFISDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRC 1166 Query: 800 LVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVL---------GRVTAEDVLK 850 L+ + L V D + G D + + + V E + Sbjct: 1167 LIKNLECLKVCYDYTVRDSDGSIVQFNYGDDGVDVHQTSFITEFEALAVNQEVVCEKFGQ 1226 Query: 851 PGTAD-ILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHII 909 G + + L ++ +E + ++ + Y LA+ Sbjct: 1227 DGKFNGYIQKLPKELRKKTKKFIEGFMEERQDFDNMKKQKDFVNLVKQKYISSLAQ---- 1282 Query: 910 NKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKN 954 GE +GV+AAQS+GEP TQ+T+ TFH+ G +++ Sbjct: 1283 -PGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEVNVTLGIPRLQE 1326 >UniRef50_D0MYP8 DNA-directed RNA polymerase n=1 Tax=Phytophthora infestans T30-4 RepID=D0MYP8_PHYIN Length = 1811 Score = 456 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 163/749 (21%), Positives = 277/749 (36%), Gaps = 145/749 (19%) Query: 230 SGNKPE---WMILTVLPVLPPDLRPLVPLDGGRFATSDLNDL-----YRRVINRNNRLKR 281 SG KP+ L V+PV P RP V + +F + + L Y I +++ KR Sbjct: 335 SGRKPDGWRKFFLNVIPVAPSRFRPPVFMGDKQFEHAQNSHLSKIMTYSESIVQSDYYKR 394 Query: 282 LLDLAAPDIIVRNE-----------KRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADM 330 + + E LQ AV+ L+D+ + + + + Sbjct: 395 QAATTSDEDDAEKEEQVNLSRKLALWTELQNAVNLLVDSSKA-----KPGTDVAQGIKQV 449 Query: 331 IKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGL 390 I+ K+G FR++++GKRV+Y+ RSVI+ PY+ Q G+P + A L P + + Sbjct: 450 IEKKEGLFRKHMMGKRVNYAARSVISPDPYISTSQIGVPLRFAKTLTYPQPVTPWNVEEM 509 Query: 391 ATTI------KAAKKMVEREEAVVWD---------------------------------I 411 + VE E + D + Sbjct: 510 RQLVINGPDVHPGSNFVESENGRLIDLSKRTPHQREAISKTLLTRSASAQGTSKNRVKRV 569 Query: 412 LDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEG---KAIQLHPLVCAAYNADFDGDQMAV 468 + VL+NR PTLH+ I A ++ + I++H C +NADFDGD+M + Sbjct: 570 WRHLKTGDVVLMNRQPTLHKPSIMAHTARVLTNPKMQTIRMHYANCNTFNADFDGDEMNM 629 Query: 469 HVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVV-LGLYYMTRDCVNAKGEGMVL 527 H P A+ EA + + N + P +G P+ QD V G+ RD K M L Sbjct: 630 HFPQNELARSEAYNIASNDNQYIVPTDGSPLRGLIQDHVDSGVKLTQRDTFLNKDMYMQL 689 Query: 528 TGPKEAERLYRSGLASLHAR-VKVRITEYEKDANGELVAKTSLKDTTVGRAILW------ 580 A SG+ H V I + E G+ V + LK T G L Sbjct: 690 LYNAWASME-DSGVEKAHIETVPPAILKPEPLWTGKQVITSVLKLLTKGLPPLNLDSKAK 748 Query: 581 --------------MIVPKG-LPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIM 625 +I G L +++++ ++ M++ CY + G + F + Sbjct: 749 IKGDLYGSANNEHVVIFRDGELLQGVLDKSQFGASMYGMVHACYEVYGARIAADFLSALG 808 Query: 626 YTGFAYAARSGASVGIDDMVIP----EKKHEIISEAEAEVAEIQEQFQSGLVT------A 675 Y +G + ++D+ + +++ +++ ++E E +F +GL A Sbjct: 809 RLFTCYLQFAGHTCAMEDLTLNIAAEKRRQKLVKDSEVMGEEAYAEF-AGLTELLEKKRA 867 Query: 676 GERYNKVIDIWAAANDRVSKAMMDNLQTETV------------------------INRDG 711 GE+ K + ++ M L Sbjct: 868 GEKAGKKRRMNEEERAQIRDRMRTLLSGPDADYNAKALDAHMMGCVHGSNSDIIKTCLPS 927 Query: 712 QEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM--------------AKPDGSIIE- 756 + K N+ +M +GA+GS Q++ G + P + Sbjct: 928 GQSKAFPKNNFSLMVLTGAKGSMVNHSQISCGLGQQALEGRRVPILCSGRSLPSFEPFDP 987 Query: 757 -----TPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTE 811 +T F GL +Y+ R+GL DTA+KT+ SGYL R L+ +DL V Sbjct: 988 APRAGGYVTDRFLTGLRPQEYYHHCMAGREGLVDTAVKTSRSGYLQRCLIKHLEDLNVGY 1047 Query: 812 DDCGTHEGIMMTPVIEGGDVKEPLRDRVL 840 D + + + G D +P++ +L Sbjct: 1048 DHTVRNSDGGVIQFLYGEDGIDPVQSAML 1076 Score = 63.2 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 28/49 (57%) Query: 906 GHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKN 954 + GE +G++AAQ IGEP TQ+T+ TFH+ G + +++ Sbjct: 1312 RSMCAPGENVGILAAQGIGEPSTQMTLNTFHLAGHGAANVTLGIPRLRE 1360 Score = 58.6 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 57/149 (38%), Gaps = 39/149 (26%) Query: 1216 APHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFL 1275 + +L+ GV A I ++ +V+ + G+ ++ +H+ ++ M + Sbjct: 1694 DIYQVLQTYGVEAARASISKQIMEVFGVYGISVDPRHLSLLADYMTAQ------------ 1741 Query: 1276 EGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEA 1335 G + +R +G+ S + +F+ + + L++A Sbjct: 1742 -GGYMPLNR----------------------MGMN----NKGSSLQQITFETSMKFLSQA 1774 Query: 1336 AVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 A+ G D+L +++G+ GTG Sbjct: 1775 ALGGLVDKLESPSARIVLGQPPRVGTGSF 1803 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 54/169 (31%), Gaps = 29/169 (17%) Query: 15 EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74 E + S IR S ++ + + P GL+ + GPV Sbjct: 12 HEVAEVAFGFYSDAEIRDLSVKQLTSRLSFDSLN-NPVVGGLYDPAL-GPV--------- 60 Query: 75 YKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRD 134 +IC C + +GHIEL P + P G +L++ R Sbjct: 61 -----DFNMICPTCHQTQKECP---GHLGHIELPVPVYN-------PVLFGQMLNLLKRK 105 Query: 135 IERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAE 183 + V + + +L + + + + G+ + + G E Sbjct: 106 C---FTCHKFRVASARSRVVRVKILLLDNGFDNEAGQLGELLEQRNGVE 151 >UniRef50_A8J568 DNA-directed RNA polymerase (Fragment) n=1 Tax=Chlamydomonas reinhardtii RepID=A8J568_CHLRE Length = 1515 Score = 456 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 186/893 (20%), Positives = 314/893 (35%), Gaps = 181/893 (20%) Query: 236 WMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL------------- 282 L LPV P RP + G N + ++IN + L Sbjct: 468 MFFLRCLPVAPNKFRPPSKV-GDELYEHAHNVILAKIINSSLELSSGPRAVDAAARTQGG 526 Query: 283 -----LDLAAPDIIVR-NEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQG 336 AA D+ R LQ V AL+D+ +K + + ++ K+G Sbjct: 527 TGADPAQAAAMDLSRRVATWLALQNHVCALMDST----TAEDLDKSGAQGIRQQLEKKEG 582 Query: 337 RFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLA----- 391 FR+N++GKRV+++ RSVI+ PY+ + G+P A L P + L Sbjct: 583 LFRKNMMGKRVNFAARSVISPDPYIGAGEIGVPPYFAKRLSFPERVTPFNVERLRAAVIA 642 Query: 392 -----------------TTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGI 434 I+ +ER +AV ++ +L NR PTLH+ G+ Sbjct: 643 GAHQHPGAVAVEDVTTGRMIQLGNLPLERRQAVAKQLMSSTADGDLMLTNRQPTLHKPGL 702 Query: 435 QAFEPVLIEG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSP 493 A +++G + I++H C+ +NADFDGD++ +H+P + E ++ + + P Sbjct: 703 MAHRARVLKGERTIRMHYANCSTFNADFDGDEINLHLPQDQLGRSEGYVIVHADQQYIVP 762 Query: 494 ANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRIT 553 +G+PI QD V+ +T+ G T + + +Y + + + ++T Sbjct: 763 TDGKPIRGLIQDHVVAATLITKR-------GTYFTADEYRQLVYIACTPWATGKARPKVT 815 Query: 554 ------------------EYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSI---- 591 + + +G+ V T + T G L +P S Sbjct: 816 VTAAGSSFDIDLEPPCTLKPRQLWSGKQVVSTVISFFTRGLPPLSFSAGGKVPASYWGAG 875 Query: 592 -------------VNQALGKKAISK--MLNTCYRILGLKPTVIFADQIMYTGFAYAARSG 636 V + K A K +++ + G Y G Sbjct: 876 SGEDEMQFHRGALVRGVVDKNAFGKYGLVHAVQELYGNTTAGKLLSAFSRLFTYYLQWHG 935 Query: 637 ASVGIDDMVIPE-------------KKHEIISEAEAEVAEIQEQFQ----SGLV------ 673 + G+DD+++ + + + +E V + ++ + GL Sbjct: 936 FTCGMDDLLLVPGSEARRAALLATAEARAVQASSELLVDKDKKGAKGSAGEGLPAELLAD 995 Query: 674 -----------------TAGERYNKVIDIWAAANDRVSKAMMDNLQTETV-INRDGQEEK 715 GERY D A+D M L +E + + G + K Sbjct: 996 PASHARQLLHYEIKVSAELGERYRTNRDT-GKAHDMKGSGAMHALSSEVIKVCLPGGQAK 1054 Query: 716 QVSFNSIYMMADSGARGSAAQIRQLAGMRGLM--------------------AKPDGSII 755 N + +M +GA+GS Q++ + G G Sbjct: 1055 AFPQNCLSLMTITGAKGSLVNFSQISCLLGQQELEGRRPPRMASGKTLPCFRPYDGGGRS 1114 Query: 756 ETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCG 815 I F GL +Y+ R+GL DTA+KT+ SGYL R LV + L V D Sbjct: 1115 NGFIGDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLESLRVHYDGTV 1174 Query: 816 THE-GIMMTPVIEGGDVKEPL---RDRVLG-------RVTAEDVLKPGTADILVPRNTLL 864 + G D + + R G R + A + + L Sbjct: 1175 RDNCDASIVQFAYGEDGLDVMSVSYMRQFGFLARNADRFSQLAFADALRAYVAANPDGAL 1234 Query: 865 HEQWCDLLEENSVDAVKVRSVVSCDTDFG------------VCAHCYGRDLARGHIINKG 912 Q ++ D K + +V+ G + Y R LA G Sbjct: 1235 QAQDAGAKKDGKKDRKKDKELVAAGGRHGGKGSVDGPLFGQLMMLKYMRSLA-----AAG 1289 Query: 913 EAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKS 965 EA+GV+AAQS+GEP TQ+T+ TFH+ G +++ +K+ Sbjct: 1290 EAVGVLAAQSVGEPSTQMTLNTFHMAGRGEANVTLGIPRLREILMTAAPRIKT 1342 Score = 58.6 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 41/142 (28%), Gaps = 35/142 (24%) Query: 8 LKAQTKTEEFDAIKIALASPD------------MIRSWSFGEVKKPETINYRTFKPERDG 55 + T++ A++ S D +R S + P + P +DG Sbjct: 5 PAKEVTTKQVAAVRFGFYSEDEHYAKQSHAVRLQVRKLSVVNITCPLIFD-DAKVPVKDG 63 Query: 56 LFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIW 115 L+ R+ GP +KCG + G IEL P + Sbjct: 64 LYDPRM-GPTDSR-----------------DKCGTCLLSHDRCPGHFGRIELPVPVYNPL 105 Query: 116 FLKSLPSRIGLLLDMPLRDIER 137 K + LL R Sbjct: 106 VFK----VMYKLLRCTCLHCHR 123 >UniRef50_A6NYC6 DNA-directed RNA polymerase n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NYC6_9BACE Length = 1101 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 228/921 (24%), Positives = 383/921 (41%), Gaps = 114/921 (12%) Query: 103 GHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYF--------ESYVVIEGG---- 150 G+I L+ P + + S + +L+ E ++ + Y+ ++ Sbjct: 61 GYIHLSKPVVNFAIAQPNASLLMKILNADKAMTEEIVNLRTCYNEQLDCYMAVDDVESAD 120 Query: 151 ---MTNLERQQILTE--------EQYLDALEEFGDEFDAKMGAEAIQALLKS-------- 191 ++ + E E LD + ++ E+ E +A Sbjct: 121 GVLWGAEIFKKWIDEFDVEEGVRECLLDVMAKYCKEYKVTGIGEFRRAASGGYLAAGDWR 180 Query: 192 --MDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDL 249 D ++ E L + +T +K +L+ I L + MI+ + V+P + Sbjct: 181 FFPDDDETYENLATYIGKTVFRSKNSRLSFLINLQGHKDRLYA----MIMEYISVVPLGM 236 Query: 250 RPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDN 309 RP + L+ Y VI+ N LK ++ + R E L D Sbjct: 237 RPDIA-----NRHDQLSCAYDDVISANKNLKMVMSG-------MFDARTFTERYKKLSDA 284 Query: 310 GRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLP 369 R S+K KS+ D + GK G R+ +LGKRVDYSGRSVIT+ P+L + LP Sbjct: 285 VYRLLVSPKSSKSSRKSVLDKLTGKHGHIREKMLGKRVDYSGRSVITIDPFLSIRNVKLP 344 Query: 370 KKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTL 429 + MA +LF+ I + + I K+ + I+D++ PV++ R PTL Sbjct: 345 RDMAPKLFRSHILSSMNNPNPSDWIGMDKRDKCNSKIAASGIIDDI----PVVIGRQPTL 400 Query: 430 HRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNN 489 H+ ++AF+ L ++I+++PL +NADFDGDQM V VP++ A E R LM N Sbjct: 401 HKPSMRAFKAKLTNERSIRINPLCVTGFNADFDGDQMWVRVPVSEGAVQEVRDLMSIEQN 460 Query: 490 ILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVK 549 I P NGE ++P Q+++ GL TR +G + ++ L+ + RV+ Sbjct: 461 IYYPKNGECSVMPRQEIIYGLNVCTRAD---MAKGSSIKTYQDHRSLFD---DLFYQRVR 514 Query: 550 VRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCY 609 V T GR +PK + + + + K IS + Sbjct: 515 VSDTVTLGGYTD-----------CAGRVAFAACLPKAVFEQMGVKEITSKTISGYVEAML 563 Query: 610 RILGLKPTVIFADQIMYTGFAYAARSGASVGIDD--MVIPEKKHEIISEAEAEVAEIQEQ 667 L + + D ++ GF ++ + D + E E+ E+ E+ Sbjct: 564 E-LSIDSAIDGIDMMVELGFKVGYLYPPTLNLLDDEDITYADDMEAFHESMREITEL--- 619 Query: 668 FQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMAD 727 ++ G + Y+ D N ++ +D ++ + +A+ Sbjct: 620 YERG-LEEESAYDATYD--------------KNFRSIETKVKDTIFDRVGKESGFVRLAE 664 Query: 728 SGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTA 787 SGARGS + + Q+ G +G + K + I ++ E L L++F++ +G R+GL + + Sbjct: 665 SGARGSKSNMVQMYGYKGRIQKSSSESFKAVIEHSYTEQLTPLEHFVTAYGGRQGLINKS 724 Query: 788 LKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTP------VIEGGDVKEPLRDRVLG 841 L TA++GY R++ V+T DDCGT EGI + + + G V E + G Sbjct: 725 LNTADTGYAMRKMWHATSPYVITCDDCGTTEGIEIKKSDIAMFLQDSGGVDEIFCKIITG 784 Query: 842 RVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGR 901 R A N + ++ L +N+ +RS +SC C CYG Sbjct: 785 RYQA-------------GTNIYIDKRMASELCKNNASVT-IRSPISCKDP--CCKKCYGD 828 Query: 902 DLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLS 961 D + + G +G IAA SIGEPGTQL+M +F GG AS+ SS K + I+ Sbjct: 829 DPSTHRLAAIGLPVGFIAAHSIGEPGTQLSMDSFKKGGIASKGGVTSSF-AKLEAYIECK 887 Query: 962 NVKSVVNSSGKLVITSRNTEL 982 N+ N I + E+ Sbjct: 888 NLADNKNFGTYDPIAWESGEV 908 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 47/280 (16%), Positives = 94/280 (33%), Gaps = 28/280 (10%) Query: 1101 LPGKAIVQLEDGVQISSGDTLARIPQESGGTKD---ITGGLPRVADLFEARRPKEP---- 1153 LP I G G L+ + GG +T ++ E + + Sbjct: 840 LPVGFIAAHSIGE---PGTQLSMDSFKKGGIASKGGVTSSFAKLEAYIECKNLADNKNFG 896 Query: 1154 --AILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVIS 1211 +A SG V G +++ I + P + +G +ERGD Sbjct: 897 TYDPIAWESGEVHETFYPDGSKKVTIGDSRIAKRLPAEAPLRKVAVKGQGLCMERGDY-- 954 Query: 1212 DGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGS 1271 +++L + Y+++ + +Y+ + +IN KH EV+ M + Sbjct: 955 ----DINELLMHTDLRTAQLYLIHTLYHIYKDE-CEINMKHFEVLAAAMTLHMVVSTD-R 1008 Query: 1272 SDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRV 1331 D G+ + + + Y L + + + +S + Sbjct: 1009 KDLYVGQFHDSIQ-------MHKGSLDNTLYLSTLKSVKEIQTSRTHALSRVIMESVKSG 1061 Query: 1332 LTEAAVAGKRDELRGLKENVIVGRLIPA-GTGYAYHQDRM 1370 L+ + + G D L +++G+ I GTG + +M Sbjct: 1062 LSSSLLLGLEDPLEYPLNRIVMGQEIYCGGTGEFLEERKM 1101 >UniRef50_B3S2I6 DNA-directed RNA polymerase n=1 Tax=Trichoplax adhaerens RepID=B3S2I6_TRIAD Length = 1724 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 189/1050 (18%), Positives = 364/1050 (34%), Gaps = 227/1050 (21%) Query: 4 LLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFG 63 + + + A++ + + + IR S ++ T + R GL + Sbjct: 1 MANWSNNTVPIKRPLAVRFSTYTSEDIRKLSVKQITNVHTFD-RLMNANHGGLCDPALGP 59 Query: 64 PVKDYEC-LCGK------------------YKRLKHRGVI------CEKCG--------V 90 C CG+ Y L + ++ C +C + Sbjct: 60 IETLSPCSTCGQIMDYCPGHFGHIDLHLPVYHPLFFKHMLMLLKGMCFQCHHLHGTPAAL 119 Query: 91 EVTQTKVRRERMGHI-------ELASPTAHIW-------FLKSLPSRIGLLLDMPLRDIE 136 + +++ G + ++A A+ F + I + + Sbjct: 120 NLFVCQLKLLEYGLLTKCYELPDIADAVANTLSSSEDMSFQQIQKGIIHAINAEVQHALA 179 Query: 137 RVLYFESYVVIE--GGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAI--------- 185 + + + + ++++ + + + + + G I Sbjct: 180 NIPLQDKKNTSKWTYSKNVTQCRKLILHQFFHYCISHGSKKCNRCKGPPHIIRAQHHAKV 239 Query: 186 --QALLKSMD------LEQECEQLREE-LNETNSETKRKKLTKRIKLLEAFV-------Q 229 + +KS+D +E E R++ ++ ++L K K + V Sbjct: 240 FYKQRVKSIDQGKNTEMESEYSLARQKYMHPIEVRYHLRQLWKNEKRILTLVFGTFNKLT 299 Query: 230 SGNKPEW---MILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDL- 285 S + L V+PV P RP+ L RF S +++ N ++ L+D Sbjct: 300 SNRRIANENSFFLDVIPVPPTRFRPVSTLGDSRF-ESPQTTNLNKILEDNVVVEDLIDNL 358 Query: 286 -----------------------------AAPDIIVRNEKRMLQEAVDALLDNGRRGRAI 316 + P + N LQ V+ +D+ + Sbjct: 359 KQEENKNVNDHDVKVKSYYFGGRSIKIAGSTPTARLHNAWLRLQTHVNCFVDSDLDKLS- 417 Query: 317 TGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALEL 376 S+K P + +++ K+G R++++GKRV+++ RSVI+ + + G+P+ A +L Sbjct: 418 --SDKAP--GIKQILEKKEGLLRKHMMGKRVNFAARSVISPDLSINCDEVGVPEVFATKL 473 Query: 377 FKPFIYGKLELRGLATTI------KAAKKMVEREEAVVWDI------------------- 411 +R L + ++E E+ + I Sbjct: 474 TYCQPVTPFNVRQLRNAVINGPNKHPGATLIEFEDGNIKKISQHSFNQRQALAKQLLTPN 533 Query: 412 ----------LDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAYNAD 460 ++ VL+NR PTLHR I A + ++ G K ++LH C YNAD Sbjct: 534 TSHVGQCKKVHRHLVDGDVVLMNRQPTLHRPSIMAHKVRVLPGEKTLRLHYANCKCYNAD 593 Query: 461 FDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQD-VVLGLYYMTRDCVN 519 FDGD+M +HVP + ++ EA + + L P +G+PI QD +V + M R + Sbjct: 594 FDGDEMNMHVPQSELSRAEAYTIASTKYQYLLPKDGKPISGLIQDHMVSSVKLMIRGRMF 653 Query: 520 AKGEGM---------------VLTGPKEAERLYRSGLASLHARV---------KVRITEY 555 K + +L R SG L + + + Sbjct: 654 TKEQYFQLIYFALTDKDGPIHLLPPCIIKPRQLWSGKQVLSTLLLNILPKNSTPLNMLGK 713 Query: 556 EKDANGELVAKTSLKDTTVGRAILWMIVPK--------GLPYSIVNQALGKKAISKMLNT 607 K A+ V K + + + I+ + L I+++A +++ Sbjct: 714 SKIADKSWVNTRMKKKSRYYKPLYDEILSESQVVIRQGELLCGILDKAHFGATSYGLVHC 773 Query: 608 CYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQ 667 CY + G + F + + +G ++GI+D+++ + + + + A Sbjct: 774 CYELYGGDTSTTFLSSVSKLLTKFLQMNGFTLGIEDILVRQDADNLRQQFIKDCA----- 828 Query: 668 FQSGLVTAGERYN-----KVIDIWAAANDRVSKAMMDNLQTETVINRD------------ 710 SG A E +N V + + A+ + +K ++ L++ N D Sbjct: 829 -SSGNKIAKEAFNVNSKSLVQEKFCQAHLK-NKDLLAELESHMKRNTDHFTNEINKACTG 886 Query: 711 GQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM--------------AKPDGSIIE 756 K N++ +M SGA+GS Q++ + G + + P + + Sbjct: 887 AGLLKLFPENNLQLMVQSGAKGSTVNCMQISCLLGQIELEGKRPPLMISGRSLPSFTPYD 946 Query: 757 T------PITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVT 810 T + F GL +YF R+GL DTA+KT+ SGYL R LV + LVV Sbjct: 947 TSPRAGGFVDNRFLSGLRPQEYFFHCMAGREGLVDTAVKTSRSGYLQRCLVKHLEGLVVQ 1006 Query: 811 EDDCGTHEGIMMTPVIEGGDVKEPLRDRVL 840 D + G D + + L Sbjct: 1007 YDLTVRDTDGSVIQFQYGEDSVDVTNTQFL 1036 Score = 71.3 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 908 IINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVV 967 ++ G +G++AAQSIGEP TQ+T+ TFH G +++ + N+K+ Sbjct: 1222 LVEPGCPVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVGSPNIKT-- 1279 Query: 968 NSSGKLVITSRN 979 +VI +N Sbjct: 1280 --PSMIVILKKN 1289 Score = 67.4 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 56/147 (38%), Gaps = 39/147 (26%) Query: 1218 HDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEG 1277 H + G+ A R I+ E+++V+R+ G+ +N +H+ +I M EG Sbjct: 1608 HAMASTYGIEAAYRAIIKEIENVFRVYGIDVNYRHLSLIADYMT-------------YEG 1654 Query: 1278 EQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAV 1337 +R LG+ + S SF+ T L EA Sbjct: 1655 SYRPLNR----------------------LGMA----SCSSPFQKMSFETTVHFLREATA 1688 Query: 1338 AGKRDELRGLKENVIVGRLIPAGTGYA 1364 G+ D L+ ++ GR++ GTG Sbjct: 1689 HGEIDVLKSPSSRLVTGRVVNGGTGCF 1715 >UniRef50_A5DCV3 DNA-directed RNA polymerase II subunit RPB1 (Fragments) n=110 Tax=Eukaryota RepID=RPB1_PICGU Length = 1579 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 146/641 (22%), Positives = 261/641 (40%), Gaps = 88/641 (13%) Query: 6 KFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPV 65 +F + ++ L SP+ +R+ S +++ PET++ T +P GL R+ Sbjct: 4 QFPHSSAPLRSVKEVQFGLLSPEEVRAISVAKIEYPETMDQATKRPREGGLNDPRLGSID 63 Query: 66 KDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRI- 124 ++++ C+ CG ++ + GHIELA P HI F+ + Sbjct: 64 RNFK---------------CQTCGEDMAECP---GHFGHIELAKPVFHIGFIAKIKKVCE 105 Query: 125 -------GLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGD-EF 176 LLLD + + + + NL + +++ E L E + + Sbjct: 106 CVCMHCGKLLLDESNPAMAQAIRIRDPKKRFNAVWNLCKGKMICEADVLQDDGEGNEPKR 165 Query: 177 DAKMGAEAIQALLKSMDL------------EQECEQLREELNETNSETKRKKLTKRIKLL 224 ++ G Q +++ L ++ + R L + K + + Sbjct: 166 TSRGGCGHTQPVVRKDGLKLWGTWKQNKNYDETEQPERRLLTPSEILNVFKHINSEDCVR 225 Query: 225 EAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLD 284 F + +PEWM++TVLPV PP +RP + + DL VI N ++RL Sbjct: 226 LGFNEDYARPEWMLITVLPVPPPPVRPSIAFNDTARGEDDLTFKLADVIKANINVQRLEL 285 Query: 285 LAAPDIIVRNEKRMLQEAVDALLDNGRRGRA-ITGSNKRPLKSLADMIKGKQGRFRQNLL 343 +P ++ + +LQ V +DN G+ RP+KS+ +KGK+GR R NL+ Sbjct: 286 DGSPQHVISEFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLM 345 Query: 344 GKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIK------AA 397 GKRVD+S R+VI+ P L L Q G+P +A L P I + L ++ Sbjct: 346 GKRVDFSARTVISGDPNLDLDQVGVPISIARTLTYPEIVTPYNIHRLTEYVRNGPNEHPG 405 Query: 398 KKMVEREEAVV-----------------WDILDEVIREHPVLLNRAPTLHRLGIQAFEPV 440 K V R+ W + ++ + PVL NR P+LH++ + Sbjct: 406 AKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMCHRVK 465 Query: 441 LIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPII 500 ++ +L+ V + YNADFDGD+M +HVP + E + E + I+SP + +P++ Sbjct: 466 VMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSEICAVPLQIVSPQSNKPVM 525 Query: 501 VPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDAN 560 QD + G+ MT + + + + + + + D + Sbjct: 526 GIVQDTLCGVRKMTLRDIFIEYDQV------------------------MNMLYWIPDWD 561 Query: 561 GELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAI 601 G ++ +LKD + ++ A + I Sbjct: 562 G-VIPPMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQQI 601 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 62/162 (38%), Gaps = 20/162 (12%) Query: 695 KAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSI 754 +M+ L + N++ M SG++GS I Q++ G I Sbjct: 548 DQVMNMLYWIPDWDGVIPPMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVEGKRI 607 Query: 755 --------------------IETPITANFREGLNVLQYFISTHGARKGLADTALKTANSG 794 + + ++ GL ++F R+GL DTA+KTA +G Sbjct: 608 PFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETG 667 Query: 795 YLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLR 836 Y+ RRLV +D++V D + + + G D + + Sbjct: 668 YIQRRLVKALEDIMVHYDGTTRNSLGDIIQFVYGEDGVDGTQ 709 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 93/470 (19%), Positives = 168/470 (35%), Gaps = 89/470 (18%) Query: 904 ARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNV 963 + +++ GE +GVIAAQSIGEP TQ+T+ TFH G +S+ ++K ++ NV Sbjct: 886 FQKSLVHPGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLK-----EILNV 940 Query: 964 KSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVA-NWDP 1022 + + V ++ + E KV A + + V + + DP Sbjct: 941 AKNIKTPALTVYLEKDIAADI--------EKAKVVQSA-IEHTTLKNVTASTEIFYDPDP 991 Query: 1023 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD 1082 + + + + + D + + L L + + + A KI Sbjct: 992 RSTVLEEDYDTVEAYFAIPDEKVEESIEKQSPWLLRLELDRAKMLDKQLTMAQVAEKISQ 1051 Query: 1083 AQGNDVLIPGTDMPAQYFLPGKAIVQ----LEDGVQISSGDTLARIPQESGGTKDI--TG 1136 G D+ + +D A + +V+ L++ V L RI + + Sbjct: 1052 NFGEDLFVIWSDDTADKLIIRCRVVRDPKSLDEDVDAEEDQILKRIEAHMLESISLRGIQ 1111 Query: 1137 GLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQL 1196 G+ RV + + L + +G G+E + DG + Sbjct: 1112 GITRVFMM------QHKLSLPDETGEFKQGQE-------WVLETDG-------------V 1145 Query: 1197 NVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVI 1256 N+ + V D +IL + G+ A + E+ +V G +N +H+ ++ Sbjct: 1146 NLADVMAVPGVDAKRTYSNNFIEILSVLGIEATRSALFKEILNVIAFDGSYVNYRHMALL 1205 Query: 1257 VRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLAT 1316 V M L+ IT+ + Sbjct: 1206 VDVMT----------------------------------------ARGHLMAITRHGINR 1225 Query: 1317 E--SFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 + SF+ET +L EA A + D+ G+ ENV++G+L P GTG Sbjct: 1226 ADTGALMRCSFEETVEILLEAGAAAELDDCHGISENVVLGQLAPLGTGAF 1275 >UniRef50_Q4PB85 DNA-directed RNA polymerase n=3 Tax=Basidiomycota RepID=Q4PB85_USTMA Length = 1795 Score = 453 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 180/965 (18%), Positives = 337/965 (34%), Gaps = 230/965 (23%) Query: 229 QSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLL----- 283 +G + ++VL V P RP + F S N+L V+ ++ + Sbjct: 382 PNGASADSFFVSVLAVPPTRFRPASIMGDMTFENSQ-NELLTNVLKTTFSIRDQITELTR 440 Query: 284 ---DLAAPDI-------------------------IVRNEKRMLQEAVDALLDNGRRGRA 315 P++ V N LQ V++ +D + Sbjct: 441 LVSKKDFPELGPDASEADYRAAEAQLIKGREDTRRKVLNSMMQLQVDVNSFIDASKNPMP 500 Query: 316 ITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALE 375 + + P + ++ K+G FR++++GKRV+++ RSVI+ + ++ G+P A + Sbjct: 501 LRQ-GQLPPPGVKQGLEKKEGLFRKHMMGKRVNFAARSVISPDVNIETNEIGVPPVFARK 559 Query: 376 LFKPFIYGKLELRGLATTIKAA---------------------KKMVEREEAVVWD---- 410 L P ++ + + K VE A+ Sbjct: 560 LTYPEPVTVHNVQLMRQLVINGPFKYPGAVAIRSEDGTETQLDKLSVEERTALANQLLTP 619 Query: 411 ---------------------------ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIE 443 +L + +LLNR PTLHR + A + ++ Sbjct: 620 QEHSSKQARGTFAGLGSSTRTPIANKQVLRHLRDGDILLLNRQPTLHRPSMMAHKARVLV 679 Query: 444 G-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVP 502 G K I++H C +YNADFDGD+M +H P + A+ E + + N L+P +G P+ Sbjct: 680 GEKTIRMHYANCNSYNADFDGDEMNMHFPQSQAARAECYYVANTDNQYLTPTSGNPLRGL 739 Query: 503 SQDVVL-GLYYMTRDCVNAKGEGM-VLTGPKEAERLYRSGLASLHARVKVRITEYEKDAN 560 QD V+ G++ +++ + + E +L G E Y G V + + E Sbjct: 740 IQDHVVAGVWMTSKNTLYTRAEYQQMLYGALRPEGKYTGG--GRVLTVPPALLKPEPLWT 797 Query: 561 GELVAKTSLKDTTVGRAILW-----------------------MIVPKGLPYSIVNQALG 597 G+ V T L + +A +I L ++++A Sbjct: 798 GKQVISTVLLNLKPAKADGLNLTSKAKVAGRMWGKDHASEEKVIIEDGELLQGVLDKAAF 857 Query: 598 KKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHE----I 653 + +++ + I G + + + + S +DD+++ ++ E Sbjct: 858 GASSFGLVHAIFEIYGSETAGKLLSILSRLFTKFLQTNAFSCRMDDLLLSKEGDEWRRTT 917 Query: 654 ISEAEAEVAEIQEQFQSGLVTAGER-----YNKVIDIWAAANDRVSKAMMD--------N 700 + A+ + + + GL E+ N I + D A++D Sbjct: 918 LDAAKNQGKGVAMK-TVGLEGEDEKNPDTDRNLRIRLEEVLRDDDKLAVLDGEMMNSSNA 976 Query: 701 LQTETVIN-RDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM------------ 747 L ++ + + K+ N++ MM SGA+GSA + Q++ + G Sbjct: 977 LTSKIIESCLPAGLYKKFPENNMQMMTGSGAKGSAVNVSQISCLLGQQALEGRRVPLMVS 1036 Query: 748 --AKPDGSIIET------PITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRR 799 + P ET ++ F G+ +YF R+GL DTA+KT+ SGYL R Sbjct: 1037 GKSLPSFRPFETSARAGGFVSGRFLTGIRPQEYFFHCMAGREGLIDTAVKTSRSGYLQRC 1096 Query: 800 LVDVAQDLVVT------------------EDDCGTHEGIMMTPVIEGGDVKEPLRDRV-- 839 L+ + + + ED T + + E R Sbjct: 1097 LIKHLEGVHIQYDNTVRNADGSVLQFNYGEDALDTTKSKYIGQFDFTAANFENYNKRYDP 1156 Query: 840 --LGRVTAEDVLKPGTADILVPRNTL---------------LHEQWCDLLEENSVD---- 878 LG V ++ L + + E++ +E Sbjct: 1157 KQLGEVVEAELAAEHMKKALKKPHKYDPVLSVYLPSTHFGSMSEKYAKEIEAYIEKNPSK 1216 Query: 879 ------------------------AVKVR---SVVSCDTDFGVCAHCYGRDLARGHIINK 911 K+R + + +C Y R L ++ Sbjct: 1217 LLADKKKKSKKRKSEASAPDEATAVEKLRFAKEKLGVEAFRAMCKVLYHRGL-----VDP 1271 Query: 912 GEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSG 971 GEA+G++AAQ +GEP TQ+T+ TFH G + +++ I ++ + + Sbjct: 1272 GEAVGLLAAQGVGEPSTQMTLNTFHFAGHGAANVTLGIPRLR---EIVMTASQHIKTPIM 1328 Query: 972 KLVIT 976 +L + Sbjct: 1329 RLPVL 1333 Score = 71.7 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 51/145 (35%), Gaps = 29/145 (20%) Query: 14 TEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCG 73 T + + + + IR S ++ P ++ T P GL+ + GP++ Sbjct: 8 TSTISSASFSFLTAEDIRRISVKQIINPVLLD-TTNHPNAGGLYDPAL-GPMRP------ 59 Query: 74 KYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL----------PSR 123 IC C + GHIEL SP H F+ ++ R Sbjct: 60 --------NDICSTCH---LNSYQCPGHFGHIELPSPVFHPLFMGNMFNLLRGTCFYCHR 108 Query: 124 IGLLLDMPLRDIERVLYFESYVVIE 148 L L + + I R+ E +V + Sbjct: 109 FRLPLVVLTKVIGRLRLLEYGLVDD 133 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 39/143 (27%) Query: 1220 ILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQ 1279 +L GV A IV E++ ++ G+ ++ +H+ +I G F Sbjct: 1676 VLHTYGVEAARAAIVAEMRGIFDTYGIAVSPRHLFLIADYQTA-----AGGFRPF----- 1725 Query: 1280 VEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAG 1339 NR GI+++S S + ASF+ T + +A+ G Sbjct: 1726 ---------NRS----------------GISESS----STLLKASFEMTMAFIGGSALHG 1756 Query: 1340 KRDELRGLKENVIVGRLIPAGTG 1362 + D L+ ++VGR + +GTG Sbjct: 1757 EVDMLKTPSSKLVVGRPVNSGTG 1779 >UniRef50_Q19VA0 DNA-directed RNA polymerase subunit beta'' n=2 Tax=Streptophyta RepID=RPOC2_CHLAT Length = 1396 Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 163/473 (34%), Positives = 248/473 (52%), Gaps = 28/473 (5%) Query: 587 LPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVI 646 + N+ + K I + + G T +++ GF +A ++G S+ +DD+ I Sbjct: 1 MNLFFCNRTIEKGEIRRFIAWFIFHHGTARTTQMVERLKVLGFRHATKAGVSLSVDDLKI 60 Query: 647 PEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETV 706 P K ++ +AE E+ + Q+Q G +TA ER+ KVID W + ++ + ++ + Sbjct: 61 PPSKRWLLEDAEEEIQFTERQYQKGKITAVERFQKVIDTWHSTSETLKDEVVQHFLQTD- 119 Query: 707 INRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREG 766 + N +YMMA SGARG+ +Q+RQL GMRGLM+ P G II+ PI +NFREG Sbjct: 120 -----------TLNPVYMMAFSGARGNISQVRQLVGMRGLMSDPQGQIIDLPIRSNFREG 168 Query: 767 LNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVI 826 L V +Y IS +GARKGL DTAL+TA+SGYLTRRLVDVAQ +++ E DCGT GI + P+ Sbjct: 169 LTVTEYVISCYGARKGLVDTALRTADSGYLTRRLVDVAQHVIIRETDCGTLSGISLMPMK 228 Query: 827 EGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVV 886 + + L +R++GRV AE + + RN + + + + VRS + Sbjct: 229 DQDKIIFSLEERLIGRVLAESIYSIQEKKYVARRNQDISANLATQIVRVKKNNIFVRSPL 288 Query: 887 SCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAA 946 +C + VC CYG LA G +++ GEA+G+IAAQSIGEPGTQLTMRTFH GG + A Sbjct: 289 TCKANRSVCQLCYGWSLAHGSLVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTGNVA 348 Query: 947 ESSIQVKNKGSIKLS-----NVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGA 1001 + I+ G + + + G+ + + LI K+P Sbjct: 349 K-QIRSPIDGIVHFPTILQNQMTTTRTRHGEEALLTNIDVEILIQTNAEKSVQLKLPQYT 407 Query: 1002 VLAKGDGEQVAGGETVANWDPHT----------MPVITEVSGFVRFTDMIDGQ 1044 VL DG+ V + +A V +++ G V F +++ + Sbjct: 408 VLFIKDGQFVRSKQLIAEVSSKNKKLQSVEIASKYVTSDLYGEVYFDNLVLQE 460 Score = 268 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 126/376 (33%), Positives = 183/376 (48%), Gaps = 61/376 (16%) Query: 1002 VLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVV 1061 L +G+ V +++A VI + SG VR ++ + + + +L + Sbjct: 1018 RLLAKNGQYVVPEDSIA-----IKEVIGKYSGEVRQSEKASEEERSFLIMNESDHITLSL 1072 Query: 1062 LDSAERTAGGKDLR------PALKIVDAQGNDVLIPGTDMPAQ----YFLPGKAIVQLED 1111 DS++ G L P +++ G + + + + Y + +A++ + Sbjct: 1073 KDSSKNLKLGDLLHKEDFIAPGVRLPQ-SGQIIQLQSDQVTIRIARPYLVSSEAVLHVNH 1131 Query: 1112 GVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKG 1171 G + SGDTL + E T DI GLPR+ +L EARR K L Sbjct: 1132 GDLVKSGDTLVMLIFEQAKTGDIVQGLPRIEELLEARRTKGLKPL--------------- 1176 Query: 1172 KRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTR 1231 P + D E + + R+ G + + + Sbjct: 1177 -------PNNLHDRLESLFFQCRK---KYGNHRAA----------------RKSLEEIQL 1210 Query: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRE 1291 ++VNE+Q VY+ QGV I+DKHIEVIVRQM K I G + L GE +E R++ N+ Sbjct: 1211 FLVNEIQSVYKSQGVSISDKHIEVIVRQMTSKVVIEEGGDTTLLPGELIELHRIENINKN 1270 Query: 1292 LEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 + + A Y +LGITKASL TESFISAASFQETTRVLT+AA+ GK D L+GLKENV Sbjct: 1271 VS----IHAQYKPVVLGITKASLNTESFISAASFQETTRVLTKAAIEGKTDWLKGLKENV 1326 Query: 1352 IVGRLIPAGTGYAYHQ 1367 I+GRLIPAGTG+ H+ Sbjct: 1327 IIGRLIPAGTGFNEHE 1342 >UniRef50_A0DJB3 DNA-directed RNA polymerase n=1 Tax=Paramecium tetraurelia RepID=A0DJB3_PARTE Length = 1696 Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 224/1294 (17%), Positives = 448/1294 (34%), Gaps = 259/1294 (20%) Query: 273 INRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIK 332 + +++ +K L + + LQ+ V L+++ R R + +++ Sbjct: 450 LKQSDHMKNNLKKIIRLDTIMQKWLELQDCVVGLVNSER----AQNKQNRETPGVKQLLE 505 Query: 333 GKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLAT 392 KQG FR ++GKRV+++ RSVI+ P L ++ G+P +A +L P L + +A Sbjct: 506 RKQGLFRMKMMGKRVNFACRSVISPDPLLSTNEVGVPTVLARKLIIPENVNSLNQQYVAD 565 Query: 393 TIKA-------------AKKMV------EREEAVVWDI---LDEVIREH-----PVLLNR 425 I KK+ ++ A+V ++ ++V+ H +L NR Sbjct: 566 LIMNGPVYPGALYFQEDGKKIALEYLTPQQRMAIVRELGSGENKVVWRHLRTGDVMLFNR 625 Query: 426 APTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 484 P+LH+ I ++ + I+ H C +YNADFDGD+M +H ++ + E + Sbjct: 626 QPSLHKPSIMGHIVRVLPNEQTIRFHYANCKSYNADFDGDEMNLHFIQSMIGRAEGYNIA 685 Query: 485 MSTNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVL---------------- 527 ++ +S NG+P+ QD+++ ++T RD K + M L Sbjct: 686 LNDYQYISQTNGKPLRELMQDMIVSSVFLTLRDTFLTKQQYMQLIYTAIWSLFEKNSQKI 745 Query: 528 -----TGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTV----GRAI 578 K + L S ++ V + Y+ D L +K L + I Sbjct: 746 ELLQPAILKPKQLWTGKQLISNIIKIIVGLNGYDPDIGLNLESKCKLSSKELPGMASDDI 805 Query: 579 LWMIVPKGLPYSIVNQAL-GKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGA 637 +I L IV++ G A M++ + + G K T AY G Sbjct: 806 QVLIKDNELLLGIVDKNQVGSGADYGMMHAFHELYGPKMTGQLLTGFARLFAAYLQYHGF 865 Query: 638 SVGIDDMVIPEKK--------HEIISEAEAEVAEI------------------------- 664 + G+DD+++ E E + + + AE Sbjct: 866 TCGMDDLIVDELHDEKRRVLIEENLKKGVRQAAEYCGYNSQIPESINLFNRSNFVFENGQ 925 Query: 665 -----------QEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQE 713 Q+ + A + + A D+ K M + +E V + G Sbjct: 926 YNHPKYLQDVHYLQYDHQIYEALRQKILIEKHQEEALDQEYKKAMTKVTSEIVGSTLGGL 985 Query: 714 EKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM--------------AKPDGSIIE--- 756 +K N MM +GA+GS Q++ + G + P + Sbjct: 986 QKLFPLNLFSMMTMTGAKGSNVNHSQVSALLGQQELEGRRVPLMPTGRSLPSFLPYDPNP 1045 Query: 757 ---TPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDD 813 + F GL ++F R+GL DTA+KT+ SGYL R L+ + L+V D Sbjct: 1046 RAGGYVADRFLTGLRPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLIVQYDL 1105 Query: 814 CGTHEGIMMTPVIEGGDVKEPLRDRVLGR--VTAEDV---------------LKPGTADI 856 + + G D + + + L + A++ K Sbjct: 1106 TVRDNDGSLIQLFYGEDGIDTTKTKYLEKFSFLAQNNQHYKQLYRVQEMKQHFKTLDGAS 1165 Query: 857 LVPRNTLLHEQWCDLLEENSVDAVKVRSVVS-------CDTDFGVCAHCYGRDLAR---- 905 + N L + + + ++KV+S ++ + ++ + LA Sbjct: 1166 VELENDTLMNAF-NPSQNLGAVSMKVQSTMNEYLQKCQNELQQKKISNKQFKSLANIRYL 1224 Query: 906 GHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKS 965 +++ GEA+G +AAQSIGEP TQ+T+ TFH+ G + +++ I ++ K Sbjct: 1225 RALMHPGEAVGCVAAQSIGEPSTQMTLNTFHLAGHGEKNVTLGIPRLR---EILMTATKK 1281 Query: 966 VVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTM 1025 + L + N E K K+ + L + +V + + + + Sbjct: 1282 QKTPTMSLQFLNANIEKS--QADRYAKRMSKLVF---LELVNNIKVREYKRLTE---NGI 1333 Query: 1026 PVITEVSGFVRFTDM-------------IDGQTITRQTDE-----LTGLSSLVVLDSAER 1067 P+ + + G + D+ I I + + L + + ++ R Sbjct: 1334 PLHSLLRGVIYEIDVELEDLNQIKYVFGISEDQIKNKVNHVFIPLLLKIIQAELNKNSSR 1393 Query: 1068 TAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQE 1127 + + + + +L ++ + + + ++ Sbjct: 1394 CVEKTSFLKTKENEAKKQRKGSDDEEEDDEDQQEEQDDLSELNQDEEVLN--IINQTFEQ 1451 Query: 1128 SGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLV----------- 1176 S DI + + + + PK+ + + ++ + +++L+ Sbjct: 1452 SAQQYDIFEESHQQQESQKKQTPKKEQQQTPQTTQHKYLEKAEVQKQLIKVVIKLPLNSK 1511 Query: 1177 ------ITPVDGSDPYEEMIPKWRQLNVFEGE-----------------RVERGDVISDG 1213 + S+ I + + + + ++ D I+ Sbjct: 1512 KMLMTNVVKKTLSNTVINEIKGINKAKIIKNDKSGGASFMIYTEGVNLNKIRNFDFINLN 1571 Query: 1214 PEAPHDILRLR---GVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAG 1270 +DI+ + G+ A I+ E+ V+ GV ++ +H+ +I M I Sbjct: 1572 NIDCNDIVAIMNAFGIEAARNAIIKEILAVFGAYGVAVDYRHLYLIADYMTFGGQI---- 1627 Query: 1271 SSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTR 1330 + NR +F+ +T+ Sbjct: 1628 ---------------RAMNRIYMDFNTAP--------------------FGKMTFETSTQ 1652 Query: 1331 VLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 LT A + + D L +++GR+ G+ Sbjct: 1653 FLTNACLNRETDTFNNLSSQLVIGRVPKVGSNLC 1686 Score = 67.8 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 54/330 (16%), Positives = 107/330 (32%), Gaps = 76/330 (23%) Query: 14 TEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCG 73 T+ ++ + IR S E+ P+ + + P R GL+ + Sbjct: 21 TKRIQSVHFGYYTAKEIREMSVKEISNPKAFD-KLNHPIRGGLYDPALG----------- 68 Query: 74 KYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLL----- 128 + RG C CG E +GHIEL P + + + L S + Sbjct: 69 --VQPHERGTRCVTCGQENMDCT---GHVGHIELLLPVYNPYLVNQLMSLMRSKCYYCHK 123 Query: 129 -------------DMPLRDIERVLYFESYVVI--------EGGMTNLERQQILTEEQYLD 167 + L + R++ + Y + + R+Q +T Sbjct: 124 LRITKDRKKFYKNNFKLLRLGRLIEMKKYQKLYMTKLRLNKQTKNAENRKQSITATDTSR 183 Query: 168 ALEEFGDEFDAKMGAE---AIQALLKSMDLEQECEQLREELNETNSET-------KRKKL 217 + D KM + A Q L D++Q+ +++ + L ++ + + Sbjct: 184 KGSDHRKGSDNKMQCDQETAPQEFLDIEDVKQQIQEILDILQVKKHQSEYIDGIHQTSHI 243 Query: 218 TKRIKLL-EAFVQSGNKPEWMILTVLPVLP--PDLRPLVPLDGGRFATSDLNDLYRRVIN 274 + +K+L + F + NK P + P V +G R++ Sbjct: 244 LQELKILTKQFFKDINKKC----------PHCNKVSPNVRKEGVMKKE-------ARILK 286 Query: 275 RNNRLKRLLDLAAPDIIVRNEKRMLQEAVD 304 R N K + II + + + ++ Sbjct: 287 RTNNNKDRIRRK---IITQIQWKFQSIYIN 313 >UniRef50_B8M0T3 DNA-directed RNA polymerase n=3 Tax=Eurotiomycetidae RepID=B8M0T3_TALSN Length = 1689 Score = 448 bits (1152), Expect = e-124, Method: Composition-based stats. Identities = 170/912 (18%), Positives = 318/912 (34%), Gaps = 192/912 (21%) Query: 217 LTKRIKLLEAFVQS-----GNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRR 271 L ++ K + V S P+ + + + V P RP GG+ + N + + Sbjct: 330 LFEKEKEILNLVYSSRLGFKISPDMLFVRNILVPPNRFRPPAQ-QGGQIMEAQQNTPFTQ 388 Query: 272 VINRNNRLKRLL----DLAAPDIIVRNEKRMLQ------EAVDALLDNGRRGRAITGSNK 321 ++ + + + +R + +LQ E V+ L+D+ R + + Sbjct: 389 ILKTCDLINMISHSRQTAETEGTRMREYRDLLQAIVTLQEQVNTLIDSDRGPGGMAAA-- 446 Query: 322 RPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFI 381 R + +++ K+G FR+N++GKRV+Y+ RSVI+ P L H+ G+P A +L P Sbjct: 447 RQANGVKQLLEKKEGLFRKNMMGKRVNYAARSVISPDPSLETHEVGVPMVFAKKLTFPEP 506 Query: 382 YGKLELRGLATTI------KAAKKMVEREEAVV--------------------------- 408 L + +E E V Sbjct: 507 VTSFNFHELREAVINGPDKYPGASAIENESGQVVNLKFKTLDERTALANQLLAPSHAKMK 566 Query: 409 ----WDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAYNADFDG 463 + + V++NR PTLH+ + ++ + ++L +YNAD+DG Sbjct: 567 GNRNKKVYRHLTTGDYVIMNRQPTLHKPSMMGHRARVLPNERVLRLPYPNTNSYNADYDG 626 Query: 464 DQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVV-LGLYYMTRDCVNAKG 522 D+M +H P A+ E + + +S +G+P+ QD + + + +RD + Sbjct: 627 DEMNMHFPQNTIARAELSMITDADRQYISSTDGKPLRGLIQDHITVSTFLTSRDTFFEED 686 Query: 523 EGMVL----TGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKD------- 571 E L P+ A + A ++ R + G+ V T LK+ Sbjct: 687 EYQQLLYSCLRPENANTVTDRIQLVEPAFIRPR-----RLWTGKQVISTVLKNIMPPNRR 741 Query: 572 --------TTVGRAIL------WMIVPKG-LPYSIVNQALGKKAISKMLNTCYRILGLKP 616 +T G +I G L I+++ + ++ + I G Sbjct: 742 GLNLQGKSSTPGERWGKDNEEDSVIFKDGELLCGILDKKQIGASGGGFIDAIHEIYGNAI 801 Query: 617 TVIFADQIMYTGFAYAARSGASVGIDDMVIPE----KKHEIISEAEAEVAEIQEQF---- 668 + + S GI+D+ + K+ +I+ +A + ++ Sbjct: 802 AGSLLSILGRLLTRFLNMRAFSCGIEDLRLTPEGDRKRVDILEKAATLGRNVSLKYVTLD 861 Query: 669 -QSGLVTAGERYNKVIDIW-----AAANDRVSKAMMDNLQTETVIN-RDGQEEKQVSFNS 721 E ++ D+ + D V + L ++ + KQ +N Sbjct: 862 QNPAADQDAELRRRLEDVLRDDQKQSGLDSVYNSQTRKLTSDIAASCLPHGLIKQFPWNQ 921 Query: 722 IYMMADSGARGSAAQIRQLAGMRGLM--------------AKPDGSIIET------PITA 761 + +M +GA+GS+ ++ G P ET + Sbjct: 922 MQLMTTTGAKGSSVNANLISCNLGQQVLEGRRVPVMVSGKTLPSYRAFETHPQAGGYVCG 981 Query: 762 NFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTH--EG 819 F G+ +Y+ T R+GL DTA+KTA SGYL R L+ + + V D G Sbjct: 982 RFLTGIKPQEYYFHTMAGREGLIDTAVKTAKSGYLQRCLIKGMEAVKVEYDSSVRDTANG 1041 Query: 820 IMMTPVIEGGDVKEPLRD------------------------------------------ 837 + I G D + + Sbjct: 1042 GSVIQFIYGEDGLDVGKQVHLQNFSFLANNYVSTMAQLNMTQDFHALEKPEVLQWHKDAM 1101 Query: 838 ---RVLGRVTAED----VLKPG--------TADILVPRNTLLHEQWCDLLEENSVDAVKV 882 R GR+ A+D V +PG + + + + ++ + Sbjct: 1102 KQVRKTGRLDAKDPTLAVYQPGGHYGSVSEAFSLALKKYEERNPDKLLKDKKAGITGA-- 1159 Query: 883 RSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAAS 942 +S V Y +I+ G+A+G++A QSIG TQ+T+ TFH+ G ++ Sbjct: 1160 ---LSKKAFESVMHMKYL-----NSVIDPGDAVGIVAGQSIGSQTTQMTLNTFHLAGHSA 1211 Query: 943 RAAAESSIQVKN 954 R +++ Sbjct: 1212 RNVTLGVPRLRE 1223 Score = 60.9 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 56/157 (35%), Gaps = 38/157 (24%) Query: 1208 DVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIV 1267 + + + HD+L GV A I+ E+ DV+ + ++++H+ +I M Sbjct: 1564 NPHTIRTNSIHDMLIFYGVEAARSTIIREMSDVFSGHSITVDNRHLNLIGDVMTH----- 1618 Query: 1268 NAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQE 1327 + G + + + S S +SF+ Sbjct: 1619 SGGFKSYSRNGLI---------------------------------KESNSPFSKSSFET 1645 Query: 1328 TTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 + + +A + D+L+ ++VGRL GTG Sbjct: 1646 SVGFMRDAVLERDFDDLKSPSSRIVVGRLGNVGTGAF 1682 Score = 47.0 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 37/116 (31%), Gaps = 20/116 (17%) Query: 14 TEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCG 73 E A+ ++ S + I+ S + +++ P + L+ + G D+ C Sbjct: 9 ASELAAVDFSVYSSEDIKKISVKRIFNTPSLD-SLHNPIPNSLYDPAL-GAWGDHVCTTC 66 Query: 74 KYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLD 129 + + GHIEL P ++ F + + D Sbjct: 67 R------------------ASSWSCPGHPGHIELPVPIWNVTFFDQMYRLLRAKCD 104 >UniRef50_O95602 DNA-directed RNA polymerase I subunit RPA1 n=40 Tax=Deuterostomia RepID=RPA1_HUMAN Length = 1720 Score = 448 bits (1151), Expect = e-123, Method: Composition-based stats. Identities = 217/1149 (18%), Positives = 378/1149 (32%), Gaps = 260/1149 (22%) Query: 15 EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74 I + S + ++ S + P ++ P +GL+ + C Sbjct: 10 RRLQGISFGMYSAEELKKLSVKSITNPRYLD-SLGNPSANGLYDLALGPADSKEVCSTCV 68 Query: 75 YKRLKHRGVI-------------------------CEKCGVE--------VTQTKVRRER 101 G + C C + + ++R Sbjct: 69 QDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLE 128 Query: 102 MGHIELASPTAHIW--FLKSLPSRIG-----------------LLLDMPLRDIERVLYFE 142 +G ++ I FL+ P LL ++ V + Sbjct: 129 VGALQAVYELERILNRFLEENPDPSASEIREELEQYTTEIVQNNLLGSQGAHVKNVCESK 188 Query: 143 SYVVI-----EGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQE 197 S ++ + + + F A + A Q + + +E+ Sbjct: 189 SKLIALFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEA 248 Query: 198 CEQLREELNETNSETKRKKLTKRIKLLEAFVQSGN---------KPEWMILTVLPVLPPD 248 R L T++ L K ++ SG P L L V P Sbjct: 249 QIGKRGYLTPTSAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSR 308 Query: 249 LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIV---------------- 292 RP+ L F T+ + V+ +++LL L A + + Sbjct: 309 YRPVSRLGDQMF-TNGQTVNLQAVMKDVVLIRKLLALMAQEQKLPEEVATPTTDEEKDSL 367 Query: 293 --------------------RNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIK 332 N LQ V+ + D+ + +K P + +++ Sbjct: 368 IAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMM---DKYP--GIRQILE 422 Query: 333 GKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLAT 392 K+G FR++++GKRVDY+ RSVI Y+ ++ G+P A +L P ++ L Sbjct: 423 KKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQ 482 Query: 393 ------TIKAAKKMVEREE---------------AVVWDIL----------------DEV 415 + MV E+ AV +L V Sbjct: 483 AVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATGAPKPQGTKIVCRHV 542 Query: 416 IREHPVLLNRAPTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTL 474 +LLNR PTLHR IQA ++ K ++LH C AYNADFDGD+M H P + Sbjct: 543 KNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSE 602 Query: 475 EAQLEARALMMSTNNILSPANGEPIIVPSQD-VVLGLYYMTRDCVNAKGEGMVLTGPKEA 533 + EA L + L P +G+P+ QD +V G TR C + M Sbjct: 603 LGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYM-------- 654 Query: 534 ERLYRSGLASLHARVK---VRITEYEKDANGELVAKTSL--------------------- 569 E +YR GL RVK I + G+ V T L Sbjct: 655 ELVYR-GLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKAKITG 713 Query: 570 ----KDTTVGRAILW--------MIVPKG-LPYSIVNQALGKKAISKMLNTCYRILGLKP 616 K+T +I+ +G L ++++A + +++ CY I G + Sbjct: 714 KAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGET 773 Query: 617 TVIFADQIMYTGFAYAAR-SGASVGIDDMVIPEK----KHEIISEAE------------- 658 + + AY G ++G++D+++ K + II E+ Sbjct: 774 SGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPQAVRAALNL 833 Query: 659 ---AEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEK 715 A E++ ++Q + +R +ID+ + + + + Sbjct: 834 PEAASYDEVRGKWQDAHLGKDQRDFNMIDL------KFKEEVNHYSNEINKACMPFGLHR 887 Query: 716 QVSFNSIYMMADSGARGSAAQIRQLAGMRGLM--------------AKPDGSIIE----- 756 Q NS+ MM SGA+GS Q++ + G + + P E Sbjct: 888 QFPENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRA 947 Query: 757 -TPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCG 815 +T F G+ ++F R+GL DTA+KT+ SGYL R ++ + LVV D Sbjct: 948 GGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTV 1007 Query: 816 THEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLL--HEQWCDLLE 873 + + G D + + + L+P L ++ + ++L Sbjct: 1008 RDSDGSVVQFLYGEDGLDIPKTQ---------FLQPKQFPFLASNYEVIMKSQHLHEVLS 1058 Query: 874 ENSVDAV--KVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIG----EPG 927 R++ + G L+ I EA+ + +S PG Sbjct: 1059 RADPKKALHHFRAIKKWQSKHPNTLLRRGAFLSYSQKIQ--EAVKALKLESENRNGRSPG 1116 Query: 928 TQLTMRTFH 936 TQ +R ++ Sbjct: 1117 TQEMLRMWY 1125 Score = 71.7 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 69/164 (42%), Gaps = 15/164 (9%) Query: 847 DVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARG 906 D+ ++ + ++W + +S +S D + + R L Sbjct: 1153 DIYFASVSETFETKVDDYSQEWA-----AQTEKSYEKSELSLDRLRTLLQLKWQRSL--- 1204 Query: 907 HIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSV 966 GEA+G++AAQSIGEP TQ+T+ TFH G +++ + +N+K+ Sbjct: 1205 --CEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTP 1262 Query: 967 VNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQ 1010 + + + NT+ L K+ +V G VL K D ++ Sbjct: 1263 M-----MSVPVLNTKKALKRVKSLKKQLTRVCLGEVLQKIDVQE 1301 Score = 60.1 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 41/204 (20%), Positives = 79/204 (38%), Gaps = 40/204 (19%) Query: 1169 TKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEG-ERVERGDVISDGPEAPHDILRLRGVH 1227 TKG R ++ + +E++ +N+ E + E D+ H I G+ Sbjct: 1556 TKGITRCLLNETTNNKNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIHAIANTYGIE 1615 Query: 1228 AVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKI 1287 A R I E++DV+ + G+ ++ +H+ ++ M EG +R Sbjct: 1616 AALRVIEKEIKDVFAVYGIAVDPRHLSLVADYM-------------CFEGVYKPLNRF-- 1660 Query: 1288 ANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGL 1347 GI + S + +F+ + + L +A + G DELR Sbjct: 1661 --------------------GIR----SNSSPLQQMTFETSFQFLKQATMLGSHDELRSP 1696 Query: 1348 KENVIVGRLIPAGTGYAYHQDRMR 1371 ++VG+++ GTG + +R Sbjct: 1697 SACLVVGKVVRGGTGLFELKQPLR 1720 >UniRef50_D2A5Z9 DNA-directed RNA polymerase n=1 Tax=Tribolium castaneum RepID=D2A5Z9_TRICA Length = 1619 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 202/1060 (19%), Positives = 366/1060 (34%), Gaps = 209/1060 (19%) Query: 13 KTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLC 72 K FD++ ++ + + I+ ++ P T++ P GL+ + GP+ + C Sbjct: 13 KHLSFDSVVFSMFTKEEIKKLCITKICTPLTLD-PLGHPLSGGLYDKSL-GPMTEKSEPC 70 Query: 73 GKYKRLKHR---------------------------GVICEKC-------GVEVTQT-KV 97 G ++ + + C C V+ + T ++ Sbjct: 71 GTCRKNLYFCPGHFGYIELPLPVVNPIFYRMIGTILRMACLSCFRFQIPEHVKYSITLQI 130 Query: 98 RRERMG----HIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVL------YFESYVVI 147 R G +E+A+ A + + I + +P+R E + YV+ Sbjct: 131 RLLNCGLVTEAVEIANSIALLILVHESLENIPEDVVLPIRKYETLAQEMQEKLNGEYVLT 190 Query: 148 EGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLR----- 202 + T R Q + E E M E +Q L + L ++ + Sbjct: 191 KN--TETLRNQFVNEMLREVKARETCMHCKHSM--EKVQVLRNKIILSKKRNVAKGSTEV 246 Query: 203 ---------EELNETNSETKRKKLTKRIKLLEAFVQS------GNKPEWMI-LTVLPVLP 246 + + S T + + K K L + + G P + V+PV+P Sbjct: 247 LGKVKAFEAKYVTPDESRTYMRNIWKEEKELMREIIAVLGGVEGEHPTDVFYWDVIPVIP 306 Query: 247 PDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLL----------------------- 283 P++RP V + R + + LY+ +I+ N L RL+ Sbjct: 307 PNMRP-VNIVNSRVSEHPTSQLYKNIIH-NTILLRLIIQVVKNKGDLGSLPPEAKGAYNV 364 Query: 284 -DLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNL 342 ++P + LQ VD+L+D A + L +I+ K G R ++ Sbjct: 365 SKGSSPIEKLNLAWESLQSEVDSLIDTTYIRNA-------NVAGLKQIIEKKTGIIRMHM 417 Query: 343 LGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI------KA 396 +GKRV++S R+VIT P L + + G+P+ A L P + L I Sbjct: 418 MGKRVNFSARTVITPDPNLNIDEIGIPEVFAKHLTYPVPVTSWNVEELRKMIMNGPDVHP 477 Query: 397 AKKMVEREEAVVWDI------------------------------LDEVIREHPVLLNRA 426 MVE E+ + I + +LLNR Sbjct: 478 GAVMVEYEDGTIKRINTNNTTQQESILKRLLTPDKIVGFRGVKRVHRHLCNGDVLLLNRQ 537 Query: 427 PTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMM 485 PTLH+ I A +++G K +LH C AYNADFDGD+M H P A+ EA L+ Sbjct: 538 PTLHKPSIMAHTARVLKGEKTFRLHYANCKAYNADFDGDEMNAHFPQNELARSEAYNLVN 597 Query: 486 STNNILSPANGEPIIVPSQDVVLGLYYMT----------------RDCVNAKGEGMVLTG 529 N L P +G P+ QD ++ ++ + N G+ ++L Sbjct: 598 VCNQYLVPKDGTPLSGLIQDHMIAGVKLSLRGRFFNEVDYKHFVFQALANKTGKIILLPP 657 Query: 530 PKEAERLYRSGL-----------------ASLHARVKVRITEYEKDANGELVAKTSLKDT 572 SG +L A K+ ++ + S Sbjct: 658 AIIKPCQLWSGKQILSTVFINIIPEGHERINLTASAKISAKAWQTAPPRKWKGGGSRFVN 717 Query: 573 TVGRAILWMIVPKG-LPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAY 631 + +++ G L ++++ +++ Y + G + + Sbjct: 718 PNTMSEAEVVIRGGELLVGVLDKTHYGATPYGLVHCMYELYGGVYATGLLSALAKLFTRF 777 Query: 632 AARSGASVGIDDMVIPEK----KHEIISEAEAEVAEIQEQFQS-------GLVTAGERYN 680 + G ++G+ D++ EK + +II A ++ + R N Sbjct: 778 LQKEGFTLGVHDILTVEKADQRRRQIIEGARKIGLDVITTALDMPRDSPIEEIVDKIREN 837 Query: 681 KVID-IWAAANDRVSKAMMDNLQTE-TVINRDGQEEKQVSFNSIYMMADSGARGSAAQIR 738 V + W A DR K +D+ + + N++ +M SGA+G+ Sbjct: 838 SVKNPKWRATVDRQYKTALDSFTNDINKTCLPAGLVLKFPENNLQLMVQSGAKGTTVNTM 897 Query: 739 QLAGMRGLM--------------AKPDGSIIE------TPITANFREGLNVLQYFISTHG 778 Q++ + G + + P I E I F G+ ++F Sbjct: 898 QISCLLGQIELEGKRPPVMISGKSLPSFPIFEFAPRAGGFIDGRFMTGIQPQEFFFHCMA 957 Query: 779 ARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDR 838 R+GL DTA+KT+ SGYL R L+ + L V D + + G D + + + Sbjct: 958 GREGLIDTAVKTSRSGYLQRCLIKHLEGLTVGYDLTVRDSDKCVIQFLYGEDGMDISKLQ 1017 Query: 839 VLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVD 878 L + I +L ++ ++ + Sbjct: 1018 FLNSKQLVFLADNSKGMIDKKALKMLKDEHQKSVKAHKQQ 1057 Score = 82.5 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 82/499 (16%), Positives = 147/499 (29%), Gaps = 78/499 (15%) Query: 904 ARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNV 963 A + GE +G++AAQSIGEP TQ+T+ TFH G +++ I + Sbjct: 1167 AMRSLCAPGEPVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLR---EILMMAS 1223 Query: 964 KSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGD-GEQVAGGETVANWDP 1022 K++ S ++ + ++ + + D E+V N +P Sbjct: 1224 KNIKTPSMEIPFLPVENLEEKAEDLRKML--------TRVVVADVLEKVDV-TVELNVEP 1274 Query: 1023 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD 1082 T +RF + + + +L R G+ K+ Sbjct: 1275 VRQHRYT-----LRFQ-FLPRKYYKNDFY----VGPKYILKHMTRKFFGEMFTAIRKLSK 1324 Query: 1083 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA 1142 N V++ D + + D +E T+D G + Sbjct: 1325 VTSNLVMM---DEEKRQKASNDDEEETNDADANED-----SSDEEPEDTEDAKTG-NKFK 1375 Query: 1143 DLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE 1202 + + + P+E K + + Y Sbjct: 1376 QIHDDQEPEESEREDSGDEDTETAPPVDDKTNEAVV-----ESYNFAQNYIYDTKKHHWC 1430 Query: 1203 RVERGDVISDGPEAPHDILR----------LRGVHAVTRYIVNEVQDVYRLQGVKI---- 1248 + G + ILR + Y+ N+V R G+ I Sbjct: 1431 EITFGLPLEFKKLDLTAILRDVAAKSVLWETPNIKRAITYMKNDVL-TLRTDGINILEMS 1489 Query: 1249 -------------NDKHIEV----IVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRE 1291 ND H I M K + + G +V+ + + Sbjct: 1490 KYHALLDLNRLNCNDIHKMAETYGIEAAM--KIIVKEVQDVFNVYGIKVDPRHLSLIADY 1547 Query: 1292 LEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 + NG K ++ S + +F+ + L A + GKRD L + Sbjct: 1548 MTFNGTFEPLSR-------KGMESSASPLQQMTFESSLTFLRNATIGGKRDNLTNPSSCL 1600 Query: 1352 IVGRLIPAGTGYAYHQDRM 1370 +VG+ GTG +M Sbjct: 1601 MVGKPCVTGTGCFEVLHKM 1619 >UniRef50_B9ZVN9 DNA-directed RNA polymerase n=24 Tax=Eumetazoa RepID=B9ZVN9_HUMAN Length = 1659 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 217/1149 (18%), Positives = 378/1149 (32%), Gaps = 260/1149 (22%) Query: 15 EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74 I + S + ++ S + P ++ P +GL+ + C Sbjct: 10 RRLQGISFGMYSAEELKKLSVKSITNPRYLD-SLGNPSANGLYDLALGPADSKEVCSTCV 68 Query: 75 YKRLKHRGVI-------------------------CEKCGVE--------VTQTKVRRER 101 G + C C + + ++R Sbjct: 69 QDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLE 128 Query: 102 MGHIELASPTAHIW--FLKSLPSRIG-----------------LLLDMPLRDIERVLYFE 142 +G ++ I FL+ P LL ++ V + Sbjct: 129 VGALQAVYELERILNRFLEENPDPSASEIREELEQYTTEIVQNNLLGSQGAHVKNVCESK 188 Query: 143 SYVVI-----EGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQE 197 S ++ + + + F A + A Q + + +E+ Sbjct: 189 SKLIALFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEA 248 Query: 198 CEQLREELNETNSETKRKKLTKRIKLLEAFVQSGN---------KPEWMILTVLPVLPPD 248 R L T++ L K ++ SG P L L V P Sbjct: 249 QIGKRGYLTPTSAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSR 308 Query: 249 LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIV---------------- 292 RP+ L F T+ + V+ +++LL L A + + Sbjct: 309 YRPVSRLGDQMF-TNGQTVNLQAVMKDVVLIRKLLALMAQEQKLPEEVATPTTDEEKDSL 367 Query: 293 --------------------RNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIK 332 N LQ V+ + D+ + +K P + +++ Sbjct: 368 IAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMM---DKYP--GIRQILE 422 Query: 333 GKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLAT 392 K+G FR++++GKRVDY+ RSVI Y+ ++ G+P A +L P ++ L Sbjct: 423 KKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQ 482 Query: 393 ------TIKAAKKMVEREE---------------AVVWDIL----------------DEV 415 + MV E+ AV +L V Sbjct: 483 AVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATGAPKPQGTKIVCRHV 542 Query: 416 IREHPVLLNRAPTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTL 474 +LLNR PTLHR IQA ++ K ++LH C AYNADFDGD+M H P + Sbjct: 543 KNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSE 602 Query: 475 EAQLEARALMMSTNNILSPANGEPIIVPSQD-VVLGLYYMTRDCVNAKGEGMVLTGPKEA 533 + EA L + L P +G+P+ QD +V G TR C + M Sbjct: 603 LGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYM-------- 654 Query: 534 ERLYRSGLASLHARVK---VRITEYEKDANGELVAKTSL--------------------- 569 E +YR GL RVK I + G+ V T L Sbjct: 655 ELVYR-GLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKAKITG 713 Query: 570 ----KDTTVGRAILW--------MIVPKG-LPYSIVNQALGKKAISKMLNTCYRILGLKP 616 K+T +I+ +G L ++++A + +++ CY I G + Sbjct: 714 KAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGET 773 Query: 617 TVIFADQIMYTGFAYAAR-SGASVGIDDMVIPEK----KHEIISEAE------------- 658 + + AY G ++G++D+++ K + II E+ Sbjct: 774 SGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPQAVRAALNL 833 Query: 659 ---AEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEK 715 A E++ ++Q + +R +ID+ + + + + Sbjct: 834 PEAASYDEVRGKWQDAHLGKDQRDFNMIDL------KFKEEVNHYSNEINKACMPFGLHR 887 Query: 716 QVSFNSIYMMADSGARGSAAQIRQLAGMRGLM--------------AKPDGSIIE----- 756 Q NS+ MM SGA+GS Q++ + G + + P E Sbjct: 888 QFPENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRA 947 Query: 757 -TPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCG 815 +T F G+ ++F R+GL DTA+KT+ SGYL R ++ + LVV D Sbjct: 948 GGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTV 1007 Query: 816 THEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLL--HEQWCDLLE 873 + + G D + + + L+P L ++ + ++L Sbjct: 1008 RDSDGSVVQFLYGEDGLDIPKTQ---------FLQPKQFPFLASNYEVIMKSQHLHEVLS 1058 Query: 874 ENSVDAV--KVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIG----EPG 927 R++ + G L+ I EA+ + +S PG Sbjct: 1059 RADPKKALHHFRAIKKWQSKHPNTLLRRGAFLSYSQKIQ--EAVKALKLESENRNGRSPG 1116 Query: 928 TQLTMRTFH 936 TQ +R ++ Sbjct: 1117 TQEMLRMWY 1125 Score = 71.7 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 69/164 (42%), Gaps = 15/164 (9%) Query: 847 DVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARG 906 D+ ++ + ++W + +S +S D + + R L Sbjct: 1153 DIYFASVSETFETKVDDYSQEWA-----AQTEKSYEKSELSLDRLRTLLQLKWQRSL--- 1204 Query: 907 HIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSV 966 GEA+G++AAQSIGEP TQ+T+ TFH G +++ + +N+K+ Sbjct: 1205 --CEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTP 1262 Query: 967 VNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQ 1010 + + + NT+ L K+ +V G VL K D ++ Sbjct: 1263 M-----MSVPVLNTKKALKRVKSLKKQLTRVCLGEVLQKIDVQE 1301 Score = 60.1 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 41/204 (20%), Positives = 79/204 (38%), Gaps = 40/204 (19%) Query: 1169 TKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEG-ERVERGDVISDGPEAPHDILRLRGVH 1227 TKG R ++ + +E++ +N+ E + E D+ H I G+ Sbjct: 1495 TKGITRCLLNETTNNKNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIHAIANTYGIE 1554 Query: 1228 AVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKI 1287 A R I E++DV+ + G+ ++ +H+ ++ M EG +R Sbjct: 1555 AALRVIEKEIKDVFAVYGIAVDPRHLSLVADYM-------------CFEGVYKPLNRF-- 1599 Query: 1288 ANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGL 1347 GI + S + +F+ + + L +A + G DELR Sbjct: 1600 --------------------GIR----SNSSPLQQMTFETSFQFLKQATMLGSHDELRSP 1635 Query: 1348 KENVIVGRLIPAGTGYAYHQDRMR 1371 ++VG+++ GTG + +R Sbjct: 1636 SACLVVGKVVRGGTGLFELKQPLR 1659 >UniRef50_P48120 DNA-directed RNA polymerase subunit beta'' n=1 Tax=Cyanophora paradoxa RepID=RPOC2_CYAPA Length = 1265 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 182/551 (33%), Positives = 284/551 (51%), Gaps = 64/551 (11%) Query: 591 IVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKK 650 NQ +GKK + ++ + G T +Q+ GF YA ++G S+ ++D++IP K Sbjct: 12 FFNQTIGKKEVKNVIAWAFTSYGAARTAYLVEQLKDLGFHYATKAGISLSVEDLLIPPLK 71 Query: 651 HEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRD 710 ++ AE E+ ++ G +T ER+ KVIDIW ++ + ++D ++ Sbjct: 72 DSLLQTAENEIKATLNRYLLGEITEVERFQKVIDIWHRTSETLKDEVVDYFKSTD----- 126 Query: 711 GQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVL 770 NS+YMM+ SGARG+ +Q+ QL GMRGLMA P G II+ PI +NF+EGL Sbjct: 127 -------PLNSLYMMSFSGARGNLSQVHQLVGMRGLMADPQGEIIDFPIRSNFKEGLTTT 179 Query: 771 QYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGD 830 +Y IS++GARKG+ DTAL+TA+SGYLTRRLVD+AQ++++ E DC T G+++T + E G Sbjct: 180 EYLISSYGARKGVVDTALRTADSGYLTRRLVDIAQEVIIREIDCETPRGVILTALKENGK 239 Query: 831 VKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDT 890 + L+DR++GRV ++ P T ++ +N + D + + + V +RS ++C Sbjct: 240 ILISLKDRLVGRVLLHNLYHPKTHSLIAQKNESISVLLADDIIKAGLKEVWIRSPLTCKA 299 Query: 891 DFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSI 950 VC +CYG +LA G ++ GEA+G+IAAQSIGEPGTQLTMRTFH GG + A+ I Sbjct: 300 TRSVCQYCYGWNLAHGRLVELGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTAEVAK-QI 358 Query: 951 QVKNKGSIKLS---NVKSVVNSSGKLVI-TSRNTELKLIDEFGRTKESYKVPYGAVLAKG 1006 G I + + G N +L+L E G+ + S+ + G+++ Sbjct: 359 TAPFPGRIYYPLNTTFREIRTRYGDNAWWVENNAKLRLEGENGK-RVSFNLTQGSIIRIK 417 Query: 1007 DGEQVAGGETVANW-----------DPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTG 1055 D V + +A + T + T+++G V F ++ + DE G Sbjct: 418 DQSWVETNDLLAEIASTAPNTRRAKEKTTRELRTDIAGEVYFQNL--------EIDEAGG 469 Query: 1056 LSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI 1115 VD G + I G ++ Y L V L++G I Sbjct: 470 Q------------------------VDTAGGSIWILGGNV---YNLSSNFDVILKNGDFI 502 Query: 1116 SSGDTLARIPQ 1126 +G LAR Sbjct: 503 LNGSILARTQF 513 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 137/447 (30%), Positives = 218/447 (48%), Gaps = 46/447 (10%) Query: 958 IKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETV 1017 IK + + S NS + + K F T + + + V GE + Sbjct: 790 IKTNFIPSSQNSFELEFLIIESILPKNDKYFDSTVLESLAKAQTKILVKNNQLVKKGELI 849 Query: 1018 ANWDPHTMPVITEVSGFVRFTD------------MIDGQTITRQTDELTGLSSLVVLDSA 1065 A + +I+ G +R+ + + Q +T LT L + + + Sbjct: 850 AQIE-----IISINQGEIRWIGDNTAKQIRRLLLITEKQIVTIPIQNLTKLKNKNL-NLG 903 Query: 1066 ERTAGGKDLRPALKIVDAQGNDVLIPGT----DMPAQYFLPGKAIVQLEDGVQISSGDTL 1121 G+++ +KI + G + I T + Y + +AI+++ G + SG++L Sbjct: 904 NFIRAGEEIEETIKIPN-SGQIIEITSTYIRLRISRPYLISARAIIRVLTGDLVQSGESL 962 Query: 1122 ARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVD 1181 A + E T DI GLPR+ +L EAR+PK+ +L+ G L I +D Sbjct: 963 ALLVFERAKTGDIIQGLPRIEELLEARKPKDNCVLSTHPGFTQLY--YSETIELKIKSLD 1020 Query: 1182 GSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRL------------------ 1223 + E+ P V + +E G +S+G + H+IL + Sbjct: 1021 KINTLLELQP-GVFPTVTNNQFIEAGAPLSEGDISVHEILEIFFNLYFKNRVNCLSLADA 1079 Query: 1224 --RGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVE 1281 + + +++V+EVQ VY+ QG+ I+DKHIE+I++QM K I G + L E +E Sbjct: 1080 IHLSLQKIQQFLVSEVQSVYQSQGIDISDKHIEIIIKQMTNKVKIEEGGDTTLLPNELIE 1139 Query: 1282 YSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKR 1341 + +++ N + + A+Y+ LLGITK+SL T+SFISAASFQETTRVL +AAV GK Sbjct: 1140 FQQIEKMNEKFSTSNGQLASYTPILLGITKSSLNTQSFISAASFQETTRVLAKAAVEGKI 1199 Query: 1342 DELRGLKENVIVGRLIPAGTGYAYHQD 1368 D+LRGLKENVI+G LIPAGTG++ + D Sbjct: 1200 DQLRGLKENVIIGNLIPAGTGFSAYND 1226 >UniRef50_P49467 DNA-directed RNA polymerase subunit beta' n=4 Tax=Bacillariophyta RepID=RPOC1_ODOSI Length = 843 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 213/430 (49%), Positives = 293/430 (68%), Gaps = 5/430 (1%) Query: 127 LLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEE-QYLDALEEFGDEFDAKMGAEAI 185 L P ++ Y ++ T L ++ +E + LD ++E + Sbjct: 355 LKPEPKPKLQNRRYNTPKYLLRMTPTYLIGAVLIKKELEDLDIIKEIQRTRKFIVIC--- 411 Query: 186 QALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVL 245 +L + + + R + KRI++LE + +G+ P WMILT+LPV+ Sbjct: 412 SKILHKEKPIYHFLRWFRKWELQRAYKLRDQAIKRIRILENLLATGSNPAWMILTILPVI 471 Query: 246 PPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDA 305 PP LRP++ L+GGRFATSDLN+LYRR+I RNNRL RLL++ AP +I+RNEKRMLQEAVD Sbjct: 472 PPALRPMIQLEGGRFATSDLNELYRRIITRNNRLLRLLEIDAPQLIIRNEKRMLQEAVDT 531 Query: 306 LLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQ 365 L+DNG+RG+ +N RPLKSL+D+IKGK GRFRQNLLGKRVDYSGRSVI VGP LRL++ Sbjct: 532 LIDNGKRGKIALSANNRPLKSLSDIIKGKHGRFRQNLLGKRVDYSGRSVIVVGPSLRLNE 591 Query: 366 CGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNR 425 CGLP +MALELF+PF+ ++ +GLA+ +K A+ ++E+ EA++ +L++V+ HP+ LNR Sbjct: 592 CGLPYEMALELFQPFLIREMINQGLASNMKIARNLIEQNEAIIDPVLEKVLSNHPIFLNR 651 Query: 426 APTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMM 485 APTLHRLGIQAFEP+L++G+AI+LHPLVC+A+NADFDGDQMAVH+PL+LE+Q E LM+ Sbjct: 652 APTLHRLGIQAFEPILVQGRAIKLHPLVCSAFNADFDGDQMAVHIPLSLESQSECYMLML 711 Query: 486 STNNILSPANGEPIIVPSQDVVLGLYYMTRDCV-NAKGEGMVLTGPKEAERLYRSGLASL 544 + N LSPANGEPII+PSQD+VLG YY+T + G ++ Y L Sbjct: 712 APYNFLSPANGEPIILPSQDMVLGCYYLTVSNIKGLLGSNQYFASLEDVLLAYNQDKIEL 771 Query: 545 HARVKVRITE 554 H + +R T+ Sbjct: 772 HTAIWIRYTD 781 Score = 176 bits (446), Expect = 6e-42, Method: Composition-based stats. Identities = 84/240 (35%), Positives = 130/240 (54%), Gaps = 13/240 (5%) Query: 15 EEFDAIKIALASPDMIRSWSF---------GEVKKPETINYRTFKPERDGLFCARIFGPV 65 +EFD I I LASP I WS+ GEV+K ETINYRTFKPE DGLFC RIFGP Sbjct: 6 KEFDYINIKLASPLRILQWSYRRLPNGQFIGEVQKSETINYRTFKPEMDGLFCERIFGPS 65 Query: 66 KDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIG 125 + +EC CGKYK +++ G+ICE+CGVE+T+++VRR RMGHI L P AH+W+ S P+ + Sbjct: 66 RSFECACGKYKLIRYEGLICERCGVELTESRVRRHRMGHINLIYPVAHVWYTNSRPNYMA 125 Query: 126 LLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLD-ALEEFGDEFDAKMGAEA 184 LLL++ + ++ G+ + + IL + + D +++E+ A Sbjct: 126 LLLEVEQCEKNLNTSWQILRFSLPGIYDQVLRPILLSDHWPDSSIDEYLKTICKDFSTIA 185 Query: 185 IQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPE--WMILTVL 242 +++ + Q E+ + K + + + I+ ++ + +P I L Sbjct: 186 LESSNIWAKKSKAWYQKIFEIYQELLYAKIETIYQFIEFIDNIDLTK-QPTSVNFIFDYL 244 >UniRef50_Q83066 DNA-directed RNA polymerase n=3 Tax=Lymphocystivirus RepID=Q83066_FLDV Length = 1199 Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats. Identities = 207/1027 (20%), Positives = 357/1027 (34%), Gaps = 218/1027 (21%) Query: 16 EFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKY 75 + + +L+S D+I S E+ N K E+ ++ + G Sbjct: 2 DLTSFNFSLSSDDIILKNSVTEI------NKCCLKQEKQSIYDPYLGGIEG--------- 46 Query: 76 KRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDI 135 +C C + GHI LA P Sbjct: 47 --------LCPTC---TKDSYQCPGHFGHINLAIPIL----------------------- 72 Query: 136 ERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLE 195 + Y E+ +++ N + + + + + ++G L + L+ Sbjct: 73 --IFYKEAVNILKKHCLNCGLNTLSSPCENCSVVHPSIKLTENEIG-------LSKIQLK 123 Query: 196 QECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPL 255 +++ E K K + ++I + P +ILT PVLPP RP PL Sbjct: 124 H-----KDKKIELLEPDKIKLIFEKITA-----PAHIHPTNLILTKFPVLPPCCRPQTPL 173 Query: 256 DGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRA 315 DL+ +++ NN+LK D L+ + +DN + G+A Sbjct: 174 -----VDDDLSVFLSQIVKLNNKLKLNYCPQVAD--------QLRLKILCYVDNSK-GKA 219 Query: 316 ITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALE 375 +N + + + + + K G RQN++GKR + + RSV+ L+L + +P ++A Sbjct: 220 THNTNHKAMTGIKERLSKKTGILRQNMMGKRRNQTARSVVGPDTTLKLDEVAIPYEIANN 279 Query: 376 LFKPFIYGKLELR-----GLATTIKAA----------------------------KKMVE 402 L P + +A IKA + MV Sbjct: 280 LTIPIKITPFNYKLISSYKIAAVIKANGAKYCIPTDRQKYVLIHGDSIACSKNGQEFMVT 339 Query: 403 REEAVVWDILDEVI---------------------REHPVLLNRAPTLHRLGIQAFEPVL 441 AVV D + + PV+LNR PTLHR + + V Sbjct: 340 DCNAVVPDNFEPIKKLVPFPLPTIEIGDTIERFLEDGDPVILNRQPTLHRNSMLGMKIVK 399 Query: 442 IEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIV 501 GK I+++ V +N DFDGD+ +++P + EA+ E LM I+S + I Sbjct: 400 KLGKTIRVNLAVTHGFNMDFDGDEGNLYLPQSEEARFEVAELMNPKKLIISNKYPQAEIF 459 Query: 502 PSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANG 561 P QD VLG Y MT+ P + Y L +L K ++ Sbjct: 460 PVQDAVLGAYLMTK-------------YPNMTQEEYFDCLTALDLFYKP----VKQYTTI 502 Query: 562 ELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFA 621 L+ D + L ++ I+ L K + ++ + V F Sbjct: 503 NLIKLLLPNDFCLDLTSLTIV-----NGQIITGFLTGKTLKIIVQYLALEYPCEQVVYFI 557 Query: 622 DQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNK 681 DQI + SVGI D V E + E I + + + A + YN+ Sbjct: 558 DQIQSLTNKWLLNHPFSVGIKDCV----------ELKCETHTIIKNY---YIKANKAYNE 604 Query: 682 VIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLA 741 + + + + T+ + K N+ +MA++G++G + Q+ Sbjct: 605 APFFYKETAVGIVLNSVKDAATKII--------KTDENNAFVVMANAGSKGDCFNLVQIG 656 Query: 742 GMRGLM----AKPDGSI----------------------IETPITANFREGLNVLQYFIS 775 G+ G +P +++ F GLN + F Sbjct: 657 GLLGQQYVNGQRPGYETDDDRKTLACYPRIVTDLIDKYESRGFVSSCFINGLNPRECFFH 716 Query: 776 THGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPL 835 R+G+ +T+ T +GY RR+V + +++++ D + I G P Sbjct: 717 AKSGREGMINTSQTTGVTGYAERRMVKLTENIIIAYDGSVRDAKNNIVQFIYGNHGMNPA 776 Query: 836 RDRVLG-----RVTAEDVLKPGTADILVPR-NTLLHEQWCDLLEENSVDA--VKVRSVVS 887 + G + A + T + +P N +L + L E + R+ + Sbjct: 777 KCFKTGIPLCFKRLAYKLNLNYTGPLTIPNYNNILELIFFKQLPEPIQEYVLQFHRNNIK 836 Query: 888 CDTDFGVCAHCYGRDLARGH-----IINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAAS 942 + C II+ GEA+G+I AQ+IG TQ T+ TFH G S Sbjct: 837 AGAVLIPKSACQIWTETVRKAYVAAIIDPGEAVGIICAQAIGAKQTQQTLNTFHKAGTLS 896 Query: 943 RAAAESS 949 A Sbjct: 897 EAGHRQF 903 Score = 64.0 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 49/213 (23%), Positives = 86/213 (40%), Gaps = 37/213 (17%) Query: 1154 AILAEISGIVSFGKETKGKRRLVITPVDGSDPYE-EMIPKWRQLNVFEGERVERGDVISD 1212 +IL S K K +L I PV G Y+ IP + + E V +G + Sbjct: 1005 SILLSWSTHCCIDKIFKDVLKLKIGPVQGVTGYDLYPIPHTKPI---EYAIVTKGSNLQK 1061 Query: 1213 GPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSS 1272 PH I ++V D+Y+ G+ K + R+M++ Sbjct: 1062 LLSHPHI--------KTEGAICDDVWDIYKTLGLAAVRKRL----REMIKTCV------- 1102 Query: 1273 DFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATE--SFISAASFQETTR 1330 GE++ +++ ++ GK + I + ++ T +S A+F+E+ Sbjct: 1103 ----GEEIYPEHIQLLVDQMTYKGKP--------MPIDRYTMRTHQVGPLSRAAFEESLD 1150 Query: 1331 VLTEAAVAGKRDELRGLKENVIVGRLIPAGTGY 1363 +L +AV G+ D L G+ VI G+ GTG+ Sbjct: 1151 ILVNSAVIGETDTLNGVSACVIAGKKTFIGTGF 1183 >UniRef50_A8QBY2 DNA-directed RNA polymerase n=1 Tax=Malassezia globosa CBS 7966 RepID=A8QBY2_MALGO Length = 1673 Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 173/1109 (15%), Positives = 356/1109 (32%), Gaps = 237/1109 (21%) Query: 167 DALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEA 226 + G+E D++ E L ++ L +E + + ++L + + Sbjct: 225 QTIRAAGNEPDSESTIETAITLKEARKLSKEAGDHTRVVPASECRANLRRLFANESEICS 284 Query: 227 FVQSGNKP----------EWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINR- 275 + G P + L V+ V P RP + F + N+L +++N Sbjct: 285 LI-FGRHPMFGSTPAPSADVFFLEVICVTPTRFRPASVMGDQTF-ENPQNELLTKILNTA 342 Query: 276 ------NNRLK-RLLDLAAPDIIVRNEKR------------------------MLQEAVD 304 N R + P + NE++ LQ +V+ Sbjct: 343 FFVRDCNERAQVYQTKANYPVLDEMNEQQAITAQKQWEMDRRAAMDQLLSAIMQLQVSVN 402 Query: 305 ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLH 364 +D+ + + + ++ K+G FR++++GKRV+++ RSVI+ + + Sbjct: 403 CYMDSSKNPAPQRQ-GQAATPGVKQGLEKKEGLFRKHMMGKRVNFAARSVISPDVNIETN 461 Query: 365 QCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVW--------------- 409 + G+P A L P + + + AV Sbjct: 462 EIGVPPVFAKRLTYPEPVTVHNYELMRQLVINGPDVYPGAHAVRGEDGTDTLLKNLSVEE 521 Query: 410 -------------------------------------DILDEVIREHPVLLNRAPTLHRL 432 +L + +++NR PTLH+ Sbjct: 522 RTALANQLLTPQGQTSRQARGTFGGIGGTLRTPVINKQVLRHLRTGDILVMNRQPTLHKP 581 Query: 433 GIQAFEPVLIEG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNIL 491 + A +++G + I++H C +YNADFDGD+M +H P + A+ E + + N L Sbjct: 582 SMMAHRARVLQGERTIRMHYANCNSYNADFDGDEMNMHFPQSQMARAECYNIANTDNQYL 641 Query: 492 SPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKV 550 P +G P+ QD V+G +MT ++ + + E Y G + Sbjct: 642 VPTSGNPLRGLIQDHVVGGVWMTCKNTLYTRDEYQQFIFGAIRPETYGQG--GRIRTLPP 699 Query: 551 RITEYEKDANGELVAKTSLKDTTV-----------------------GRAILWMIVPKGL 587 I + + G+ V T L + T + ++ L Sbjct: 700 AILKPKPRWTGKQVISTILCNVTPPHAQGLNMDAKARVGAKYWGEQHKEEEMVVVRDGEL 759 Query: 588 PYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIP 647 +++++ + +++ Y I G + + + S +DD+V+ Sbjct: 760 LTGVLDKSQIGASAYGLVHAVYEIYGAESAGRLLSIFSRLFTMWLQHNAFSCRMDDLVLS 819 Query: 648 EKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVI 707 + + + A + V G+ +K + R+ + + D+ + + Sbjct: 820 SEGDATRQKILKDGATHGLEAALNNVGLGDGDSKAPETHRNLRVRLEEVLRDDNKLAALD 879 Query: 708 NRDGQEEKQ-----------------VSFNSIYMMADSGARGSAAQIRQLAGMRGLMAK- 749 + N++ MMA SGA+GSA + ++ + G A Sbjct: 880 AAMMSASNKLTSSVISSCIPSGLWRVFPENNMQMMAVSGAKGSAVNVSSISCLLGPQALE 939 Query: 750 -------------PDGSIIET------PITANFREGLNVLQYFISTHGARKGLADTALKT 790 P ET + F G+ +Y+ R+GL DTA+KT Sbjct: 940 GRRVPVMVSGKTLPSFKAFETAARAGGFVAGRFLTGIAPQEYYFHCMAGREGLIDTAVKT 999 Query: 791 ANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGR----VTAE 846 + SGYL R L+ + + V D + + G D + + + L R + Sbjct: 1000 SRSGYLQRCLIKHLEGISVQYDQTVRNSDGFVLQFHYGEDSLDVSKSKYLDRFDFTIQNF 1059 Query: 847 DVLKPGTADILVPRNTLLH--EQWCDLLEENSVDAVKVRSVVS----------------- 887 + + + + + + + V SV S Sbjct: 1060 ESYRRRYNPVQLESTMEVEKAPDYMKRALKKPYKYAPVMSVYSPARHFGSMSETFAQKVE 1119 Query: 888 ---CDTDFGVCAHCYGRDLARGHIINKGEA----------IGVIAAQSIGEPG------- 927 + A + G + V+ + + EPG Sbjct: 1120 DYVSKNPRALLARKKKDSASEGVPMQLAHPKLSTEAFRAMTKVLYHRGLVEPGENVGLLA 1179 Query: 928 --------TQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITS-- 977 TQ+T+ TFH G + +++ I ++ K + +L I Sbjct: 1180 AQGIGEPSTQMTLNTFHFAGHGAANVTLGIPRLR---EIVMTASKDIKTPVMRLPILDGV 1236 Query: 978 RNTELKLIDEFGRTKESYKVPYGAVL-------AKGDG-----------EQVAGGETVAN 1019 N ++++ + G ++ A + +G + E Sbjct: 1237 TNEQMRIFCKDGSRLVLSQIIEEATVTERMMPKTPANGYQRQKLYTVRLQFYPADEVKQE 1296 Query: 1020 WDPHTMPVITEVSGFVRFTDMIDGQTITR 1048 ++ T +++ + F +++ + + Sbjct: 1297 YNASTEHILSGL--EATFVPLVEREIVRE 1323 Score = 55.9 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 39/145 (26%) Query: 1220 ILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQ 1279 +L GV A IV+E++ ++ G+ ++ +H+ +I + F G+ Sbjct: 1558 LLYCYGVEAARAAIVSELKGIFDTYGIGVSMRHMFLIAD-----------YQTAF--GDF 1604 Query: 1280 VEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAG 1339 +SR G+ A S + ASF+ T L+ A++ Sbjct: 1605 RPFSR----------------------GGLADAP----SPLLKASFEMTMAFLSGASLFQ 1638 Query: 1340 KRDELRGLKENVIVGRLIPAGTGYA 1364 + D+L N++VGR + +GTG Sbjct: 1639 EMDDLTSPSSNIVVGRPVRSGTGAT 1663 Score = 42.8 bits (99), Expect = 0.096, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 39/126 (30%), Gaps = 7/126 (5%) Query: 97 VRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLER 156 GHIEL +P H F+ S LL + + +L Sbjct: 5 ECPGHFGHIELPAPVFHPLFMNHAYS----LLRGTCLYCHHFKISKMALAKYTAQFHLLE 60 Query: 157 QQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKK 216 ++ E + + + G G + ++ + + E L + N+ Sbjct: 61 YGLVDEAERIANEQFRGP---HSAGVDVVEEGANEDGDDDDDEPLAQLQNDNQPAETVDD 117 Query: 217 LTKRIK 222 +RI+ Sbjct: 118 FIRRIR 123 >UniRef50_P91875 DNA-directed RNA polymerase I subunit RPA1 n=11 Tax=Drosophila RepID=RPA1_DROME Length = 1642 Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats. Identities = 181/1052 (17%), Positives = 349/1052 (33%), Gaps = 199/1052 (18%) Query: 20 IKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARI--FGPVKDYECLCGKYKR 77 ++ A+ + IR S +V T + GL+ R+ +G D C K + Sbjct: 16 LEFAVFTDQEIRKLSVVKVITGITFD-ALGHAIPGGLYDIRMGSYGRCMDPCGTCLKLQD 74 Query: 78 LK-HRG----------------------VICEKCGVEVTQTKVRRERMGHIELASPTAHI 114 H G + C C + I L Sbjct: 75 CPGHMGHIELGTPVYNPFFIKFVQRLLCIFCLHCYKLQMKDHECE----IIMLQLRLIDA 130 Query: 115 WFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQ---------- 164 ++ ++ ++ E ++ ++ ++ + + + E+ Sbjct: 131 GYIIEAQELELFKSEIVCQNTENLVAIKNGDMVHPHIAAMYKLLEKNEKNSSNSTKTSCS 190 Query: 165 -----YLDALEEFGDEFDAKMGAE-AIQALLKSMDLEQECEQLREEL---------NETN 209 AL+ G + + ++ + + + ++E + N+ Sbjct: 191 LRTAITHSALQRLGKKCRHCNKSMRFVRYMHRRLVFYVTLADIKERVGTGAETGGQNKVI 250 Query: 210 SETKRKKLTKRI-----KLLEAFV-----------QSGNKP-EWMILTVLPVLPPDLRPL 252 + ++ ++I +LL+ V Q P + + LPV PP RPL Sbjct: 251 FADECRRYLRQIYANYPELLKLLVPVLGLSNTDLTQGDRSPVDLFFMDTLPVTPPRARPL 310 Query: 253 VPLDGGRFATSDLNDLYRRVINRNNRLK---------------------RLLDLAAPDII 291 + G + D+Y +I N+ L + L Sbjct: 311 N-MVGDMLKGNPQTDIYINIIENNHVLNVVLKYMKGGQEKLTEEAKAAYQTLKGETAHEK 369 Query: 292 VRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSG 351 + LQ +VD LLD +G + L +I+ K G R +++GKRV+Y+ Sbjct: 370 LYTAWLALQMSVDVLLDVNMSREMKSG------EGLKQIIEKKSGLIRSHMMGKRVNYAA 423 Query: 352 RSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKA--------------- 396 R+VIT P + + + G+P A +L P + + L + Sbjct: 424 RTVITPDPNINVDEIGIPDIFAKKLSYPVPVTEWNVTELRKMVMNGPDVHPGANYIQDKN 483 Query: 397 -----------------AKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEP 439 AK ++ + + + V+ +LLNR P+LH+ I + Sbjct: 484 GFTTYIPADNASKRESLAKLLLSNPKDGIKIVHRHVLNGDVLLLNRQPSLHKPSIMGHKA 543 Query: 440 VLIEG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEP 498 ++ G K +LH C AYNADFDGD+M H P + A+ EA L+ +N L P +G P Sbjct: 544 RILHGEKTFRLHYSNCKAYNADFDGDEMNAHYPQSEVARAEAYNLVNVASNYLVPKDGTP 603 Query: 499 IIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEK- 557 + QD V+ ++ E + +L + +K + K Sbjct: 604 LGGLIQDHVISGVKLSIRGRFFNREDYQQLVFQGLSQLKKDIKLLPPTILKPAVLWSGKQ 663 Query: 558 -----------------DANGELVAKTSLKDTTVGRAILWMIVPKG-------------- 586 + + + + R + P+G Sbjct: 664 ILSTIIINIIPEGYERINLDSFAKIAGKNWNVSRPRPPICGTNPEGNDLSESQVQIRNGE 723 Query: 587 LPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVI 646 L ++++ +++ Y + G + + + G ++G+ D+++ Sbjct: 724 LLVGVLDKQQYGATTYGLIHCMYELYGGDVSTLLLTAFTKVFTFFLQLEGFTLGVKDILV 783 Query: 647 PEKKHEIISEAEAEVAEIQEQFQSG--LVTAGERYNKVIDIWAAAN----------DRVS 694 + + E + + + ++++++ AA DR Sbjct: 784 TDVADRKRRKIIRECRNVGNSAVAAALELEDEPPHDELVEKMEAAYVKDSKFRVLLDRKY 843 Query: 695 KAMMDNLQTE-TVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM------ 747 K+++D + + N++ +M SGA+GS Q++ + G + Sbjct: 844 KSLLDGYTNDINSTCLPRGLITKFPSNNLQLMVLSGAKGSMVNTMQISCLLGQIELEGKR 903 Query: 748 --------AKPDGSIIET------PITANFREGLNVLQYFISTHGARKGLADTALKTANS 793 + P + ET I F G+ +F R+GL DTA+KT+ S Sbjct: 904 PPLMISGKSLPSFTSFETSPKSGGFIDGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRS 963 Query: 794 GYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGT 853 GYL R L+ + L V D + + G D + L+ + D L Sbjct: 964 GYLQRCLIKHLEGLSVHYDLTVRDSDNSVVQFLYGEDGLDILKSKFFNDKFCADFLTQNA 1023 Query: 854 ADILVPRNTLLHEQWCDLLEENSVDAVKVRSV 885 IL P L + + L + +RS Sbjct: 1024 TAILRPAQLQLMKDE-EQLAKVQRHEKHIRSW 1054 Score = 67.8 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 33/60 (55%) Query: 906 GHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKS 965 + GE +G+IAAQSIGEP TQ+T+ TFH G +++ + SN+K+ Sbjct: 1169 KSLAAPGEPVGLIAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMLASSNIKT 1228 Score = 64.3 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 82/221 (37%), Gaps = 51/221 (23%) Query: 1148 RRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEE----MIPKWRQLNVFEGER 1203 ++P +I+ E++G + KR ++ D + + ++ + + R Sbjct: 1462 QKPDLTSIIRELAGKSVVHQVQHIKRAIIYKGNDDDQLLKTDGINIGEMFQHNKILDLNR 1521 Query: 1204 VERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRK 1263 + D+ H I R G+ A ++ IV EV +V+++ G+ ++ +H+ +I M Sbjct: 1522 LYSNDI--------HAIARTYGIEAASQVIVKEVSNVFKVYGITVDRRHLSLIADYMT-- 1571 Query: 1264 ATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAA 1323 +G SR K + S + Sbjct: 1572 -----------FDGTFQPLSR--------------------------KGMEHSSSPLQQM 1594 Query: 1324 SFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 SF+ + + L AA G+ DEL ++VG + GTG Sbjct: 1595 SFESSLQFLKSAAGFGRADELSSPSSRLMVGLPVRNGTGAF 1635 >UniRef50_C4M3E6 DNA-directed RNA polymerase n=2 Tax=Entamoeba RepID=C4M3E6_ENTHI Length = 1570 Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats. Identities = 172/873 (19%), Positives = 311/873 (35%), Gaps = 169/873 (19%) Query: 236 WMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNE 295 + VLP+ P R L G + + YR +I +N LK + A D + Sbjct: 314 MFFVEVLPIPPSRFRQLNKF-GDLISDHPQSIYYRTIIESSNALKVRREGTALDYPEKYF 372 Query: 296 KRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVI 355 +Q+A + L+ G I S+ +++ K+G FR N++GKRV+Y+ R+VI Sbjct: 373 IDQMQKAYNLLILTGNADEGI---------SMKSILEHKKGLFRNNMMGKRVNYAARTVI 423 Query: 356 TVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAA------------------ 397 + P+L + G+P A+ L + + + Sbjct: 424 SPDPFLPTNTIGMPLPFAMRLTIAVPVNERNYEEMKQAVINGPQVWPGALYIENEWGHKI 483 Query: 398 ------------KKMVEREEAVVWD---------ILDEVIREHPVLLNRAPTLHRLGIQA 436 K+ E E +V D + VI VL NR PTLH+ GI Sbjct: 484 VLLDDSNPYNKTKRQGEAERLLVIDPKAPRSFKTVFRHVIDNDMVLSNRQPTLHKPGIMG 543 Query: 437 FEPVLIE-GKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPAN 495 +++ K I++H C +NADFDGD+M +H+P ++EA+ E + +S + P N Sbjct: 544 HYVKVLKIEKTIRMHYANCNTFNADFDGDEMNLHLPQSMEARSEVMNIALSDEQYVVPKN 603 Query: 496 GEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKV-RIT 553 G+P+ QD V+ + +T RD K E + R+ + I Sbjct: 604 GQPLRGLIQDHVISSFMLTKRDTFFTKEEYCQI-----VYTALYGIYEQYSIRIPMPAIL 658 Query: 554 EYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVN-------------------- 593 + G+ V L + + + + +N Sbjct: 659 KPIPKWTGKQVVTAILMHISTNHCTINFEGKCKVSTNEINRGGYQTKKERKLMKQKDEFT 718 Query: 594 --------------------QALGKKAIS----KMLNTCYRILGLKPTVIFADQIMYTGF 629 L K I +++ Y + K + + + Sbjct: 719 EKWSGANDSLCIIKDSQMLTGTLDKNQIGASNQSLIHAIYELYNGKVSGMCLTLLSRLLT 778 Query: 630 AYAARSGASVGIDDMVIPE-----------KKHEIISEAEAEVAEIQEQFQSGLVTAGER 678 Y R G + +DD ++ K +E+ A A+ +++ + + A Sbjct: 779 TYLQRIGHTCSLDDCMLKPEFDNKRTEMLNKTNELARTAIAKHFKLEGHSKYDIDLALAN 838 Query: 679 YNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIR 738 + + +D V + + + + +NS+ +M +GA+GS Sbjct: 839 ARRRPQLSKELDDAVKTEVNECTSNVIKECIPYGQLRAFPWNSLALMTTTGAKGSKVNHS 898 Query: 739 QLAGMRGLM--------------AKPDGSIIET------PITANFREGLNVLQYFISTHG 778 Q+ + G P +T I + F G+ ++F Sbjct: 899 QITCLLGQQELEGRRVPVMATGKTLPSFPRYDTSARAGGFIASRFLTGVPPQEFFFHCMA 958 Query: 779 ARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDR 838 R+GL DTA+KTA+SGYL R ++ + + L V D + + G D + ++ Sbjct: 959 GREGLIDTAVKTASSGYLQRCVIKMLESLHVEYDYSVRESDGSIIEFMYGDDGIDVMKSG 1018 Query: 839 VLGRV-----TAEDVLKPGTADILVPRNTLLHEQWCDLLEE---NSVDAVKVRSVVSCDT 890 L + + ++ ++ + + C L ++ + V+S+ S Sbjct: 1019 FLNNIDFWANNYDALVSKYETKAILSKFKKGFSRACKLQKKCLRHPEKYEPVQSIYSPSN 1078 Query: 891 DFGVCAHCYGRDL-----------------------------ARGHIINKGEAIGVIAAQ 921 + + Y + + +IN GE +GV+A Q Sbjct: 1079 NLAAVSEKYYKLINDYIKEDKRGEFKSGKLDPETFKVMMMLKYNKSLINPGEPVGVLAGQ 1138 Query: 922 SIGEPGTQLTMRTFHIGGAASRAAAESSIQVKN 954 SIGEP TQ+T+ TFH+ G ++K Sbjct: 1139 SIGEPSTQMTLNTFHLAGRGDVNVTLGMPRIKE 1171 Score = 56.3 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 81/235 (34%), Gaps = 55/235 (23%) Query: 1130 GTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEM 1189 D + V + E IL E IV +K K I Y Sbjct: 1382 NVNDKVSMVSVVEKVIE------KIILYECPHIVRGIPLSKKKEGRTI-------YYVMT 1428 Query: 1190 IPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKIN 1249 + + G V+ V ++ + +L + GV A +++E+ V++ G+ ++ Sbjct: 1429 EGVNFRAALQFGNLVDVDTVETN---DVYAVLNMYGVEAARTVLIHEIDSVFKAYGIDVD 1485 Query: 1250 DKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGI 1309 +H+ ++ M EGE +R G+ Sbjct: 1486 PRHLNLVADYMT-------------YEGEYKSLNR----------------------SGM 1510 Query: 1310 TKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 S + +F+ + L + V+G++D LR +V++G+ + GTG Sbjct: 1511 DHNP----SPFTKITFETSLGFLAKTCVSGQKDNLRSPSGSVVMGKNMVFGTGAF 1561 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 42/237 (17%), Positives = 71/237 (29%), Gaps = 44/237 (18%) Query: 1 MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60 M + Q E + S D IR S E+ K + + + E +GL+ Sbjct: 1 MSSVELRKTFQESPVEITSTGFDFYSADEIRHMSVKEITKGTSFDLLGNQ-ELEGLYDPA 59 Query: 61 IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHI------ 114 + + + IC CG+ GH EL P Sbjct: 60 L---------------GVFGKNTICPTCGLTEEGCP---GHFGHFELEEPMYQPLLLTEL 101 Query: 115 -WFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFG 173 L+S+ + L + + FE + ++ ++ E QY+ Sbjct: 102 LKLLRSICMKCHSLKASKQVILGAAIEFE-RLAKNDIEGAMDIHGLVKEAQYIQRK---- 156 Query: 174 DEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKK-----LTKRIKLLE 225 A A + LK +E E E + E+ KK + K I + Sbjct: 157 --------ANASRGKLKREQIEDEENLTVEREVDKELESIFKKECGKGIKKDISFIH 205 >UniRef50_B7S4C1 DNA-directed RNA polymerase n=2 Tax=Bacillariophyta RepID=B7S4C1_PHATR Length = 1674 Score = 441 bits (1134), Expect = e-122, Method: Composition-based stats. Identities = 175/872 (20%), Positives = 314/872 (36%), Gaps = 161/872 (18%) Query: 237 MILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEK 296 L +PV P RP + L+G S ++I N ++ A+ + + Sbjct: 364 FFLQAVPVPPSRFRPAMYLNGMAVEHSQ-TSYLSQMIRFNESIRESF-AASDEPRAYSGW 421 Query: 297 RMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIT 356 LQ AV+ +D+ + A + P + +++ K+G FR+N++GKRVDY+ RSVI+ Sbjct: 422 IDLQTAVNCFMDSAKDPSATPTNLVAP--GIKQILERKEGLFRKNMMGKRVDYACRSVIS 479 Query: 357 VGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLA--------------------TTIKA 396 PY+ ++ GLP+ A L P L ++ + + Sbjct: 480 PDPYIGTNEIGLPRYFATVLTYPTPVTDLNVKEMRALVERGPHNYPGARWVELQGKRVDL 539 Query: 397 AKKMVEREEAVVWDIL-------------DEVIREHPVLLNRAPTLHRLGIQAFEPVLIE 443 K ++ EA+ +L ++ VL+NR PTLH+ GI A ++ Sbjct: 540 GKMNTQKREAIAAQLLTYLKRGGMPAIVGRQLRDGDYVLMNRQPTLHKPGIMAHRVRILH 599 Query: 444 G---KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPII 500 K I++H C YNADFDGD+M H P + A+ EA+ + + + P +G P+ Sbjct: 600 NPTQKTIRMHYANCNTYNADFDGDEMNCHFPQSDLARAEAQYIARTDLQYIVPTDGTPLR 659 Query: 501 VPSQDVVLGLYYMT-RDCVNAKGEGMVLTGPK----EAERLYRSGLASLHARVKVRITEY 555 QD V+G +T RD K E L + + RSG + V + Sbjct: 660 GLIQDHVVGGVKLTKRDTFFFKWEVQQLLFAALASLKGLEIIRSG--TNIELVPPALVRP 717 Query: 556 EKDANGELVAKTSL----------------------------KDTTVG---RAILWMIVP 584 + G+ V L DT G L +I+ Sbjct: 718 RELWTGKQVITIILNHLRKGSDRDSEKMSNLPGLSTSRKSKTPDTAFGAEQEEHLVLILD 777 Query: 585 KGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAA-RSGASVGIDD 643 L ++++A +++ Y G + + + AY +G S ++D Sbjct: 778 GELLRGVLDKAAFGATDFSLVHAVYEAYGPEKAGLLLNMFGRLFTAYIQYFAGHSCRMED 837 Query: 644 MVIPE----KKHEIISEAEAEVAEIQEQFQSGLV-TAGERYNKVIDIWAAANDRVSKAMM 698 +++ + ++ ++ A + + A K+ + + + A + Sbjct: 838 LILTSASDISRRMLVQKSYNIGARAAKAWADSEGGKAASTAAKIGQLLSGTEGSTNFAAL 897 Query: 699 DNLQTETVINRDGQEEKQ---------VSFNSIYMMADSGARGSAAQIRQLAGMRGLMAK 749 D + K+ +N+ +M +GA+GS Q+ G A Sbjct: 898 DGFMQSQLNPLSSAIVKKCLPDGLAVPFPYNTFGLMTTTGAKGSIVNQSQVTCALGQQAL 957 Query: 750 --------------PDGSIIE------TPITANFREGLNVLQYFISTHGARKGLADTALK 789 P + + + F G+ +Y+ R+GL DTA+K Sbjct: 958 EGRRVPRLSSGRTLPSFAPYDPNPRADGFVMDRFLTGIRPQEYYFHCMAGREGLVDTAVK 1017 Query: 790 TANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVL 849 T+ SGYL R L+ ++L + D + + + G D +P + L Sbjct: 1018 TSRSGYLQRCLMKHLEELKICYDYTVRNAEGSVVQFLYGEDGLDPTKASYLDCSEKSFEY 1077 Query: 850 KPGTADILVPRNTLLH-----------------EQWCDLL-EENSVDAVKVRSVVSCDTD 891 + L +NT L E +L+ + + + R + + Sbjct: 1078 IARNKESLERQNTALPFSSIALAAADATRHVELENNQNLIAVADPILSTPARGHLLGSSG 1137 Query: 892 FGVCAHCYG------------RDLARGHI--INKGEAIGVIAAQSI---GE--------- 925 V G R L + ++ + G IG + S+ GE Sbjct: 1138 ACVSERVAGATHNALNDPEMMRVLKQINVSDADLGVLIGAKYSSSVCAPGEAVGSIAAQS 1197 Query: 926 ---PGTQLTMRTFHIGGAASRAAAESSIQVKN 954 P TQ+T+ TFH+ G A +++ Sbjct: 1198 VGEPSTQMTLNTFHLAG-AGANVTLGIPRLRE 1228 Score = 71.7 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 18/107 (16%) Query: 8 LKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKD 67 K+ + + ++ + D +R+ S E+ + + T P +GL+ R+ GP+KD Sbjct: 10 PKSAIVRRQIEKVQFGFYNDDDVRARSVVEITSSQAFD-PTNSPLPNGLYDVRL-GPLKD 67 Query: 68 YECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHI 114 E C C + + GHIELA P H Sbjct: 68 SE-------------PPCPTCALRASHCP---GHFGHIELAVPVYHP 98 Score = 59.7 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 65/166 (39%), Gaps = 42/166 (25%) Query: 1199 FEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVR 1258 ++ E V+ ++S+ I GV A IV +++ V+ G++++ +H+ +I Sbjct: 1546 YKLECVDHNKLLSN---DIWAIRCAYGVEAARSSIVQQIRGVFGAYGIEVDPRHLSLIAD 1602 Query: 1259 QMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATES 1318 M + G K NR +G+ T S Sbjct: 1603 YMTF-----DGG--------------YKAMNR----------------IGME----ETSS 1623 Query: 1319 FISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 + SF+ T L +AA+ DE++ N++VGR I GTG Sbjct: 1624 TLLQMSFETTLHFLRQAALVEDMDEMQSPSANIVVGRPIRHGTGAF 1669 >UniRef50_Q9TL04 DNA-directed RNA polymerase subunit beta'' n=1 Tax=Nephroselmis olivacea RepID=RPOC2_NEPOL Length = 1463 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 190/582 (32%), Positives = 285/582 (48%), Gaps = 45/582 (7%) Query: 588 PYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIP 647 P N+ K I +++ GL TV + + GF YA R+G S+GI+D+ IP Sbjct: 25 PPIFFNRTADKGMIKRLIAWFLVHYGLADTVSMIEDLKQVGFQYATRAGISLGIEDLRIP 84 Query: 648 EKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVI 707 K ++ EA E+ ++ ++Q G V+ ER+ KVID W ++ + +++N Sbjct: 85 PTKPRLLQEAHREINRMEFRYQQGYVSLVERFQKVIDTWNGTSELLKDDVVENFLATD-- 142 Query: 708 NRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGL 767 N +YMMA SGARG+ +Q+RQL GMRGLM+ P G II+ PI +NFREGL Sbjct: 143 ----------PLNPVYMMAFSGARGNLSQVRQLVGMRGLMSNPQGEIIDLPIRSNFREGL 192 Query: 768 NVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIE 827 V +Y IS +GARKGL DTAL+TANSGYLTRRLVDVAQD+V+ C +++ Sbjct: 193 TVTEYIISCYGARKGLVDTALRTANSGYLTRRLVDVAQDIVIRMTSCSPSAYPLISFTKS 252 Query: 828 GGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVS 887 G +V PL +R+LGRV A +++ +T + ++ L + + VRSV+ Sbjct: 253 GKEVVYPLEERLLGRVLAIGAFNQE-GELISGPDTAISQEIAVQLMDCDPKEILVRSVLL 311 Query: 888 CDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAE 947 C + G+C CYG +L G I++ GEA+G+IAAQSIGEPGTQLTMRTFH GG + Sbjct: 312 CKSKRGLCRLCYGWNLGTGTIVSIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFAGGV-T 370 Query: 948 SSIQVKNKGSIKLSN---VKSVVNSSGKL-VITSRNTELKLIDEFGRTKESYKVPYGAVL 1003 + I+ + G + K V G+ ++ S E+ E +T + + G VL Sbjct: 371 NEIRAPHAGLVHYPRPIHPKWVRTRHGQFGILISEKIEIIFEHESKKTIQVFDA--GTVL 428 Query: 1004 AKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLD 1063 +GE+V + + H T V+G+ +DG+ + EL Sbjct: 429 TIHEGEKVHTNQLIGEIPAHG----TLVTGWRSLKSGVDGE-VRFDELELLKQRPRSDRT 483 Query: 1064 SAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLAR 1123 S R + L I+ N +P + G ++ ++ Sbjct: 484 SPVRLDPRVCNKAHLWILQGHVNTFEMPIQ-------------LVANIGDKVEKDSIVST 530 Query: 1124 IPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSF 1165 TK + R+ ++ +R KE I+ G V F Sbjct: 531 -------TKQVVSEEGRIIYRYDEKRGKEQTIITHAFGSVQF 565 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 89/273 (32%), Positives = 131/273 (47%), Gaps = 45/273 (16%) Query: 1094 DMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEP 1153 + Y + ++ + + + + LA + T DI GLP++ ++ EARR K Sbjct: 1119 RIGQPYRVGWQSRLMVTRDQIVKAEKVLAHLLYFKTKTGDIVQGLPKIEEILEARRKKGN 1178 Query: 1154 AILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDG 1213 I+ ++ + ++ Q N+ EG + + Sbjct: 1179 EII--------------------------RSNLQDFVQQFYQDNLDEGFSRKYASTRT-- 1210 Query: 1214 PEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD 1273 + A+ I+ VQ VYR QGV+I+DKH+E+I +M + + A + Sbjct: 1211 ------------MRAMQVLILRRVQLVYRSQGVQISDKHLEIISLRMTSRVLVEKAYGTG 1258 Query: 1274 FLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLT 1333 L GE +E R + N G+ Y +LGITKASL T+ FIS+ASFQETTRVLT Sbjct: 1259 ILPGEIIEKRRADMLN-----QGRTRIRYCPIVLGITKASLTTKGFISSASFQETTRVLT 1313 Query: 1334 EAAVAGKRDELRGLKENVIVGRLIPAGTGYAYH 1366 +A + GK D L GLKENVI+GRLIPAG G H Sbjct: 1314 QAVLQGKSDWLLGLKENVILGRLIPAGVGIYGH 1346 >UniRef50_Q6B8R6 DNA-directed RNA polymerase subunit beta'' n=3 Tax=Rhodophyta RepID=RPOC2_GRATL Length = 1228 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 183/550 (33%), Positives = 290/550 (52%), Gaps = 42/550 (7%) Query: 584 PKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDD 643 K + +N+ + K + +++ +R G+ AD + GF YA ++G S+ ++D Sbjct: 4 DKSIEPFFLNKVVDKSQLRQLIIWAFRNYGIARASNMADTLKDLGFLYATKAGISLSLED 63 Query: 644 MVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQT 703 + IP K+ ++ + + +++ G +TA ER+ KVID W +A+D + K ++ Sbjct: 64 LRIPPAKNNLLKTTIDLINDTDTKYRKGEITAVERFQKVIDTWNSASDTLKKQVIKYFTE 123 Query: 704 ETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANF 763 + NSIYMMA SGAR + +Q+RQL GMRGLMA P G II+ PI++NF Sbjct: 124 KD------------PLNSIYMMAFSGARANISQVRQLVGMRGLMADPQGQIIDLPISSNF 171 Query: 764 REGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMT 823 REGL + YFIS++GARKGL DTAL+TA+SGYLTRRLVDVAQD+++ E DC T +GI++ Sbjct: 172 REGLTITDYFISSYGARKGLVDTALRTADSGYLTRRLVDVAQDVIIREADCNTSKGIVLE 231 Query: 824 PVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVR 883 +I+ L ++GRV AED+ P + ++ NT + + + + +V VR Sbjct: 232 SMIDNRKTLVSLHQALIGRVLAEDLFNPAGSKLVAKLNTEISPDLANEIISLGISSVLVR 291 Query: 884 SVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASR 943 S ++C++ VC CYG +LA G I++ GEA+G+IAAQSIGEPGTQLTMRTFH GG + Sbjct: 292 SPITCESIKSVCQSCYGWNLAHGRIVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTG 351 Query: 944 AAAESSI-----QVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVP 998 A++ I QV+ +I LS+ ++ LV ++ +LKL+ +F + + S + Sbjct: 352 ELAQTVISSSDCQVEYPSNIILSDTRTRHGDHAFLV--EKDIKLKLL-DFNKKQTSLSLV 408 Query: 999 YGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSS 1058 G++L E + G+ +A + P + +ITE + D + Sbjct: 409 KGSLLFVKHLEYITSGQVIAEY-PISNRLITEKAQKAVLADFSGSIYLM----------D 457 Query: 1059 LVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSG 1118 L V + K++ I G+ I P + + + I Sbjct: 458 LSVSNIQSEQQTFKNVIKGGVIWILAGHVFSI-----------PYNTQLIISENDFIDEN 506 Query: 1119 DTLARIPQES 1128 + + S Sbjct: 507 HLIGKTEFVS 516 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 110/383 (28%), Positives = 158/383 (41%), Gaps = 58/383 (15%) Query: 1000 GAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSL 1059 L + + + G VA + + + G V Sbjct: 851 RTRLLVTNNQYIKSGTVVAQTELF-----SSLEGQVVSIQKNKSSNPRILLITSLDTKVF 905 Query: 1060 VVLDSAERTAGGKDLR------PALKIVDAQGNDVLIPGTDMPAQ----YFLPGKAIVQL 1109 + ++ DL I G + I + + Y + + + + Sbjct: 906 SINNNQNIKVNINDLIYAGDEIATNIISYISGQVISIRDNQITVRLGQPYLISEGSFLHV 965 Query: 1110 EDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKET 1169 + I G+ +A + E T D IV Sbjct: 966 NNQALIQRGENIATLIFERVKTGD----------------------------IVQGLPRI 997 Query: 1170 KGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAV 1229 + +P+ + K+RQ V +G + D + + Sbjct: 998 EEILEARKKSDSFFNPHVVLDSKFRQ-------YVNQGLNLYDAT--------RLSLLIL 1042 Query: 1230 TRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIAN 1289 Y+V E+Q VY+ QGV+I DKHIEVIVRQM K I N G +D L GE +E ++++ N Sbjct: 1043 QLYLVKELQLVYQSQGVEIADKHIEVIVRQMTSKVKIENGGDTDHLPGEIIELQKIEMLN 1102 Query: 1290 RELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKE 1349 + L K A Y LLGITKASL TESFISAASFQETT+VLT+AA++ K D LRGLKE Sbjct: 1103 KALRLASKEEALYYPILLGITKASLNTESFISAASFQETTKVLTDAAISCKLDWLRGLKE 1162 Query: 1350 NVIVGRLIPAGTGYAYHQDRMRR 1372 NVI+GRLIPAGTG+ + + Sbjct: 1163 NVIIGRLIPAGTGFNIYNNMQLN 1185 >UniRef50_D2VD58 DNA-directed RNA polymerase subunit A n=1 Tax=Naegleria gruberi RepID=D2VD58_NAEGR Length = 1755 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 176/953 (18%), Positives = 322/953 (33%), Gaps = 190/953 (19%) Query: 184 AIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLP 243 A+ +L MD+ E E L + + + + + + + I L +F N P M + Sbjct: 366 ALNEVLFKMDINNEEEHLFDLIAGSIQDNRIRYMDSYI--LHSFFD--NSPALMFTKKVL 421 Query: 244 VLPPDLRPLVPL------DGGRFAT---SDLNDLYRRVINRNNRLKRLLDLAAPDIIVRN 294 V+P RP+ PL +G T +D++ Y V+ +L + +R+ Sbjct: 422 VMPVRFRPISPLHIAAKEEGKTMVTYVKTDIDIHYINVLKT-KKLYEDIQAKLGTSTIRS 480 Query: 295 EK------RMLQEAVDALLDNGRRGRAITGS------------NKRPLKSLADMIKGKQG 336 + R LQ ++ +LD+ + + + + ++ K G Sbjct: 481 DNTAIAVLRALQCYINDMLDSTSNTSSGSNRFYSSLLKKKKTSTTTLNRGMKQLMDKKAG 540 Query: 337 RFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKA 396 RQ+++GKRV+YS R+VI + ++ P A ++ + + + Sbjct: 541 LVRQSMMGKRVNYSARTVILPDVAIACNEVSFPAMFAKKMTFMETVTNFNINKMRELVIN 600 Query: 397 AKKMVEREEAVVWD---------------------------------------------- 410 K +V Sbjct: 601 GAKQYPGANQIVKSGKTQSDVSSSTAVAPYTRPPLSIQLNVVKSKKQRVAMANQLQVGDV 660 Query: 411 ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLI-EGKAIQLHPLVCAAYNADFDGDQMAVH 469 + + +L+NR P+LHR I A +I + ++LH C ++NADFDGD+M H Sbjct: 661 VYRHLQDGDMLLMNRQPSLHRPSILAHRARVIANQRVMRLHYASCKSFNADFDGDEMNAH 720 Query: 470 VPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVLT 528 AQ EAR LM + + +P +GEP+ QD V +T +D ++ + + Sbjct: 721 FVQNPIAQSEARQLMDAQLSFCTPTSGEPLRGLIQDHVSSAVLLTMKDNFLSREDYQEIL 780 Query: 529 GPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWM------- 581 + + + + +K K L+ + K+T G + + Sbjct: 781 LSANIFDVNEVIRSEIPSILKPTPLWTGKQVITSLLKHVAKKNTPAGAPVFGVNLDCKTK 840 Query: 582 ----------------IVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIM 625 I L I +++ + +L+ G + + + Sbjct: 841 VKGTVWGAHNEEGMVIIRDNELLTGIFDKSQVGSSKYGILHAFDECYGNNASNMLISCLS 900 Query: 626 YTGFAYAARSGASVGIDDMVIPEKKH----EIISEAEAEVAEIQEQF------------- 668 Y S GIDD ++ + E + + + Sbjct: 901 RMLTFYLHYFAISCGIDDCLLSKSAEANRIETLKNSNEACHHATASYCGLPKKKDASQYD 960 Query: 669 ----------QSGLVTAGERYNKVID--IWAAANDRVSKAMMDNLQTETVINRDGQEEKQ 716 T ++ ++I+ I + V K++ + + K Sbjct: 961 HDKVKEFLAKHMLNPTVSKQTGEIINEKIVRKLDSTVKKSINKFTTKAINDSIPMGQYKA 1020 Query: 717 VSFNSIYMMADSGARGSAAQIRQLAGMRGLM---------------------AKPDGSII 755 +N + +M ++GA+GS Q+A GL + +I Sbjct: 1021 FPYNMLSLMTETGAKGSMVNSSQIAVCLGLQEFEGKRVNVQVKSGKTLPSFDSFDSNNIA 1080 Query: 756 ETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCG 815 + + F G+ ++F R GL DTA+KTA SGYL R L+ +DL V D Sbjct: 1081 NGYVASRFLTGIKPQEFFFHCMAGRDGLIDTAVKTARSGYLQRCLIKHLEDLSVQYDGTV 1140 Query: 816 THEGIMMTPVIEGGDVKEPLR--------------DRVLGRVTAEDVL------------ 849 + + GGD +P++ D + R E + Sbjct: 1141 RNGNKTVVQFSYGGDHIDPIKTGYMTQFDFMRMNQDLLSQRYNEESAIQYTKDVKEWQEK 1200 Query: 850 -KPGTADILVPRNTLLHEQW---------CDLLEENSVDAVKVRSVVSCDTDFGVCAHCY 899 K T+ I + + W D + ++A K ++ F Sbjct: 1201 TKNATSTIYKNDFVQIEDPWNYLGGVSDAYDKKLKKYIEATKTTTLSDTKKKFDPERIKT 1260 Query: 900 GRDLAR-GHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQ 951 L ++N + +G+IA QSIGEP TQ+T+ TFH G + Sbjct: 1261 LAHLKYLRSLVNASDPVGIIAGQSIGEPSTQMTLNTFHFAGLDMAHVTVGIPR 1313 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 37/203 (18%), Positives = 73/203 (35%), Gaps = 27/203 (13%) Query: 18 DAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKR 77 +++ S + I S EV T + P R L+ ++ D Sbjct: 7 KSLQFKFYSDEDIEKLSVLEVDNAIT-HDEFQIPVRGSLYDPKMGLRDNDGPMA------ 59 Query: 78 LKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLD------MP 131 CE CG+ T GHI + P ++ LK+ +++ L Sbjct: 60 ------RCETCGLVNTFCP---GHFGHISIPQPVFNVL-LKTDVTQVMNLCCPFCEKLHI 109 Query: 132 LRDIERVLYFESYVVIEG----GMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQA 187 ++ + +LY ++ G M ++ + + + EE E +A+ G + + Sbjct: 110 PKEEKTILYLVLRLLDCGLPSEAMELNDKPLMFLRKYGNEQEEEPMSEEEAEEGKKKKKK 169 Query: 188 LLKSMDLEQECEQLREELNETNS 210 K +DLE E + ++ + S Sbjct: 170 KKKKLDLETEHYRFEDDYQKLVS 192 >UniRef50_UPI0001926746 PREDICTED: similar to polymerase (RNA) I polypeptide A, 194kDa, partial n=1 Tax=Hydra magnipapillata RepID=UPI0001926746 Length = 1620 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 202/1037 (19%), Positives = 362/1037 (34%), Gaps = 239/1037 (23%) Query: 15 EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74 + ++ + + IR + ++ PET + P + GL+ + GP Sbjct: 4 QRIYSVYFTAHNAEEIRKLAIKKIDNPETFDLLRH-PNKGGLYDLAL-GP---------- 51 Query: 75 YKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRI--GLL----- 127 + IC+ C + + G+IEL P H F K + S + Sbjct: 52 ----NEKDDICDTCSLGHIKCP---GHFGYIELPLPVYHPMFFKLMISILRGSCFNFKEC 104 Query: 128 --LDMPLRDIERV----LYFESYVVIEGGMTNLERQQILTEEQYL--------------- 166 M RDI LYF S + + + E + Sbjct: 105 PHCTMIKRDIRSEYNIRLYFSSASQKSIQKAIHDLKNLKPEIKPSKIEDNFPDEEDEEEQ 164 Query: 167 --------DALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLT 218 D + + K G +I + ++ E + L E + + KK Sbjct: 165 NNDDFDEDDYCPKLQNRKKNKSGNSSIVKENFKENEDRYNEYKKLGLEEYITPEEVKKHL 224 Query: 219 KRI-----KLLEAFVQSGNKP---------EWMILTVLPVLPPDLRPLVPLDGGRFATSD 264 + +L A S N P E L V+ V P RP+ D +F + Sbjct: 225 IELWNTEYSVLNALFGSFNSPSCQSRQTSPEMFFLDVIAVPPSKFRPMSYRDEKKF-ENP 283 Query: 265 LNDLYRRVINRN-------NRLK-----------------------RLLDLAAPDIIVRN 294 + +++ NRLK +++ ++ ++N Sbjct: 284 ETENMCKILWNCKFIHELLNRLKLPTDDKPYVPVAFVSTSVSQSKRKVIPGSSHKEQLQN 343 Query: 295 EKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSV 354 LQ +V+ L+DN + + + + +++ K+G FR+N++GKRV+++ RSV Sbjct: 344 AWEELQSSVNTLMDNTLNKL-----DNKNIPGIRQLLEKKEGLFRKNMMGKRVNFACRSV 398 Query: 355 ITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI------KAAKKMVEREEAVV 408 I+ P++ + + G+P A +L L L + MVE E+ Sbjct: 399 ISPDPFINMDEVGIPLVFAKKLTYVQPVTTWNLSKLKQMVINGPNKWPGATMVEYEDGRK 458 Query: 409 ------------------------------------WDILDEVIREHPVLLNRAPTLHRL 432 + +I +LLNR PTLHR Sbjct: 459 TILSDDEYERRAVAKQLLSSSHENNLKIGRTKNYQSKKVYRHLIDGDVLLLNRQPTLHRP 518 Query: 433 GIQAFEPVLI-EGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNIL 491 I A + ++ + +++H C +YNADFDGD+M H P + EA L+ + N L Sbjct: 519 SIMAHKAKVLTNERTLRMHYANCKSYNADFDGDEMNAHFPQNELGRSEAYNLVSTHYNYL 578 Query: 492 SPANGEPIIVPSQDVVL-GLYYMTRDCVNAKGEGMVL------TGPKEAERL-------- 536 SP +G+P+ QD ++ G++ +RD + E L P + + L Sbjct: 579 SPKDGKPLAGLIQDHIVSGVWMTSRDKFFKRDEYQQLIFNALIDSPNKIKTLPPCIIKPV 638 Query: 537 -YRSGLASLHARVKVRITEYEKDANG-----ELVAKTSLKDTTV-GRAILWMIVPKG--- 586 SG + + I + N +L KD V G + + +G Sbjct: 639 PLWSGKQIFSSVLLNIIPDGLIPLNMTGNKAKLTDSNWAKDNKVLGCSDKDPFLTEGQVI 698 Query: 587 -----LPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGI 641 L I+++ +++ Y + G K + + + AY +G S+GI Sbjct: 699 IRGGELMTGILDKTQYGSTQFGLVHCVYELYGGKISGLLLSVLARLFTAYLQHTGFSLGI 758 Query: 642 DDMVIPE----KKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAAN------- 690 +D+++ K+ EII E + E + V ++ + + N Sbjct: 759 EDILVFPKSDAKRKEIIDEGKRCGDESAMEAL--NVKERDQLEECLQKAHFTNKGVELAQ 816 Query: 691 -DRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMA- 748 D K D + + K+ N++ +M SGA+GSA Q++ + G + Sbjct: 817 LDLSMKTRTDKITNKINSECINGLLKKFPENALQLMVQSGAKGSAVNCTQISCLLGQIEL 876 Query: 749 ---KPDGSIIETPITANFREGLNVLQYFISTHGAR------------------------- 780 +P +I + P+ + LN + R Sbjct: 877 EGRRPPLTISDWPVLS---PDLNSNENVWGILAKRVYGKQFSNVNELKKAIVHVWKNISL 933 Query: 781 ---------------KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPV 825 +GL DTA+KT+ SGYL R L+ + L V D + Sbjct: 934 ADVRKHLESAPNQLFEGLVDTAVKTSRSGYLQRCLIKHLEALRVEYDMTVRDGDGSVIQF 993 Query: 826 IEGGDVKEPLRDRVLGR 842 + G D + L+++ L + Sbjct: 994 LYGDDGIDVLQNQFLKK 1010 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 55/117 (47%), Gaps = 11/117 (9%) Query: 861 NTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAA 920 + + +L +N+ + + S + Y + L +++ GEA+G++A+ Sbjct: 1173 DEYIRLNPDSILSDNNEENERKISPETFRPFM------YAKYL--RSVVHPGEAVGLLAS 1224 Query: 921 QSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITS 977 QSIGEP TQ+T+ TFH G + +++ I ++ +++ +++ + Sbjct: 1225 QSIGEPSTQMTLNTFHFAGQSDMNVTLGIPRLR---EILMTASENIQTPQMDILVCT 1278 >UniRef50_Q6E6G2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Antonospora locustae RepID=Q6E6G2_ANTLO Length = 1089 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 196/1050 (18%), Positives = 354/1050 (33%), Gaps = 191/1050 (18%) Query: 19 AIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRL 78 ++ + I + S EV P + + P +GL+ R+ GP+K Sbjct: 6 SVSFTTYTASEILAISCVEVSVPASFD-SLGHPLPNGLYDERM-GPLK------------ 51 Query: 79 KHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERV 138 IC C + + GHI L + P L+ ER Sbjct: 52 --MDGICRTCNLGYFECP---GHFGHIMLPDVMIN-------PMHFDLIFKKVASTCER- 98 Query: 139 LYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQEC 198 + E + G F Sbjct: 99 ----CFSKAEKKCGRCSFRMPKFS-------RSCGKVFRNGC------------------ 129 Query: 199 EQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGG 258 + +L ++ + L V+PV+P LRP+ DG Sbjct: 130 ------------------FMRPCDILITLQKACMDADQYFLRVVPVVPNRLRPINHCDG- 170 Query: 259 RFATSDLNDLYRRVINRNNRLKR---------LLDLAAPDIIVRN--------------E 295 R N ++I +K ++ P+ R E Sbjct: 171 RVFEDSQNIFLTKIIKCALAVKENVAASENIDIMQEKRPNGSEREPYEGLNGAELPCSKE 230 Query: 296 KRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVI 355 L +V+ D+ +IT + + +++ K+G FR+ ++GKRV+Y+ RSVI Sbjct: 231 FNDLISSVNEYYDSS----SITYAKGHTPNGIKQLLERKEGLFRKYIMGKRVNYAARSVI 286 Query: 356 TVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKM--------------- 400 + P L + GLP A +L P L + K Sbjct: 287 SPDPNLETREIGLPLVFAKKLTFPENVTPFNHDRLRRAVINGPKYPGAALLKSGDVVTNL 346 Query: 401 ----VEREEAVVWDIL--DEVIREHP-----VLLNRAPTLHRLGIQAFEPVLIEG-KAIQ 448 E+ ++ +L + + H +L+NR PTLH+ I A++ +++G K ++ Sbjct: 347 LHVPEEKRVSLANQLLIGRKTVYRHLNKTDFLLVNRQPTLHKPSIMAYKVRILQGEKTLR 406 Query: 449 LHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVL 508 LH C ++NADFDGD+M VH ++ EAR L ++ N NG PI QD ++ Sbjct: 407 LHYANCNSHNADFDGDEMNVHAMQCYISKSEARYLALNDYNYKVATNGNPIRGLVQDHIV 466 Query: 509 GLYYMTRDCVNAK--GEGMVLTGP--------KEAERLYRSGLASLHARVKVRITEYEKD 558 +T + G VL P ++A + SG+ K I Sbjct: 467 MSAVLTMKDYFLRPSEYGNVLQIPLLSKEAHHEKAAPVCSSGVLKRIIVPKPAIRRPVTL 526 Query: 559 ANGELV--------------AKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAIS-- 602 G+ V +TS +++ G ++ L K + Sbjct: 527 YTGKQVVTALLQSLRLPISMRRTSRLKLCGHPEESTVVIKNG---EMLTGVLDKNNLGPA 583 Query: 603 --KMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEK----KHEIISE 656 +++ C + G + G ++ ++D+++ EK + I E Sbjct: 584 EKGLIHQCGEVFGDNVYNDLLTAVSQVINKLLVMDGYTLRMEDLLLSEKGEAGRKAAILE 643 Query: 657 AEAEVAEIQEQFQSGLVT--AGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQ-E 713 + ++ + A R + W A D + + M + +E V + Sbjct: 644 GRMHIDSAIRRYLEENLEHGATGRPRHLDKSWVACLDSLVRNSMCEVASEVVAKSMHKGM 703 Query: 714 EKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMA--------KPDGSIIE--------- 756 + +N + ++ +GA+GS Q++ M G DG + Sbjct: 704 LRNFPYNHLILIVQTGAKGSLVNASQISAMLGQQELEGRRVPLMVDGRTLPVLSETTAES 763 Query: 757 -TPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCG 815 I F +G+ + Y+ R+GL DTA+K A+ G + + + + V D Sbjct: 764 GGLIFERFLDGIGICAYYFHCMAGREGLVDTAVKPADQG-ICSDVYQHLEGVKVEYDGTV 822 Query: 816 THEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEEN 875 + G + G D +P + +G + + LK A+ L R+ L Sbjct: 823 RNNGNAIVSFRYGEDGLDPTK---VGMLKDAEFLKNNYAE-LARRHAEERNSTVKLKGSV 878 Query: 876 SVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTF 935 + + R G+ +G++A QS+GEP TQ+T+ TF Sbjct: 879 AYGHMDERHREYIGLQHVDLETLSEWRRVLAE-AQPGDPVGIVAGQSLGEPSTQMTLNTF 937 Query: 936 HIGGAASRAAAESSIQVKNKGSIKLSNVKS 965 H G ++ ++ + N+++ Sbjct: 938 HHAGVGAKNMTLGIPRLVEILMVASKNIRT 967 >UniRef50_Q1ACN4 DNA-directed RNA polymerase subunit beta'' n=1 Tax=Chara vulgaris RepID=RPOC2_CHAVU Length = 1412 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 159/500 (31%), Positives = 264/500 (52%), Gaps = 37/500 (7%) Query: 591 IVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKK 650 NQ + K I +++ G T D++ GF Y ++G S+GIDD++I K Sbjct: 9 FYNQIVDKGTIKQLIGRLVAHFGSTYTSHILDKLKELGFEYGTKTGISLGIDDLLITPSK 68 Query: 651 HEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRD 710 +I +AE + + SG + A E+ ++I+ W ++ + + M N + Sbjct: 69 KWLIQDAEQQAQASDSHYNSGNLHAVEKLRQLIETWHTTSEYLKQEMNPNFRITD----- 123 Query: 711 GQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVL 770 FN ++MMA SGARG+ +Q+ QL GMRGLM+ P G II+ PI +NFREGL++ Sbjct: 124 -------PFNPVHMMAFSGARGTTSQVHQLVGMRGLMSDPHGQIIDLPIQSNFREGLSLA 176 Query: 771 QYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIE--G 828 +Y IS +GARKG+ DTA++T++SGYLTRRLVDVAQ +VV + DC TH+ I + P +E Sbjct: 177 EYIISCYGARKGVVDTAIRTSDSGYLTRRLVDVAQHIVVRKTDCKTHKCISIQPFLEEWK 236 Query: 829 GDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSC 888 ++ ++ +++GR+ A+ VLK + RN + L ++ VRS ++C Sbjct: 237 MNIHLYVQQKLIGRILADYVLKDN--RCIASRNQDISFDLAIRLLSFKFQSIWVRSPLTC 294 Query: 889 DTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAES 948 ++ +C CYG + ++I GEA+G+IAAQSIGEPGTQLT+RTFH GG + A+ Sbjct: 295 ESTRWICQMCYGWSIGYRNLIEVGEAVGIIAAQSIGEPGTQLTLRTFHTGGVFTGDIAQ- 353 Query: 949 SIQVKNKGSIKLSN--VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYK--VPYGAVLA 1004 I+ G I+L+N ++S+ N G+ + I + K++Y+ +P ++L Sbjct: 354 QIRSPLNGIIQLNNSKIRSIRNRYGQPAFVCLDN----IHIKVKGKDTYQSIIPTESLLF 409 Query: 1005 KGDGEQVAGGETVANW--------DPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGL 1056 + ++V + +A + + +E++G V +++ Q Sbjct: 410 VKNNQKVQAKQVIAEIRSTIRQSKEEVNKNINSELAGEVFWSN---KYYFKEQNLHDLQK 466 Query: 1057 SSLVV-LDSAERTAGGKDLR 1075 ++ V + R D + Sbjct: 467 NNFFVKNNHNFRNCPTSDSQ 486 Score = 229 bits (585), Expect = 4e-58, Method: Composition-based stats. Identities = 106/270 (39%), Positives = 131/270 (48%), Gaps = 41/270 (15%) Query: 1094 DMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEP 1153 + Y AIV +G I GDTL + E DI GLP++ L EARR Sbjct: 1114 RIGKPYLATRGAIVHPRNGETIREGDTLMTLIYERLKAGDIIQGLPKIEQLLEARR---- 1169 Query: 1154 AILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDG 1213 + E+I L+ E G ++ G Sbjct: 1170 ------------------------------ENVVELIVNRYFLDCTNLLTEELGMLL--G 1197 Query: 1214 PEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD 1273 + +V E+Q VYR QGV I DKHIE+IVRQM K I+ G +D Sbjct: 1198 SLWGFQFSAWASMERSKLDLVFEIQQVYRSQGVYICDKHIEIIVRQMTSKIIILGDGMTD 1257 Query: 1274 -FLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVL 1332 FL GE VE R + NR + K Y L+GIT+ASL T SFIS ASFQETTRVL Sbjct: 1258 GFLPGELVEIPRARKTNRAM----KSIMFYKPILVGITRASLNTRSFISEASFQETTRVL 1313 Query: 1333 TEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362 T+AA+ G+ D L+GLKENVI+GRLIPAGTG Sbjct: 1314 TKAAIKGRTDWLKGLKENVILGRLIPAGTG 1343 >UniRef50_B2X2C1 DNA-directed RNA polymerase n=1 Tax=Chlamydomonas moewusii RepID=B2X2C1_CHLMO Length = 903 Score = 435 bits (1118), Expect = e-120, Method: Composition-based stats. Identities = 164/434 (37%), Positives = 246/434 (56%), Gaps = 19/434 (4%) Query: 590 SIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEK 649 NQ K + + + G TV +++ GF YA ++G S+G++D+ IP K Sbjct: 100 CFWNQTFDKGRLKNFVLWFFLKYGEHKTVRLVEELKTIGFQYATKAGISLGVEDLKIPPK 159 Query: 650 KHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINR 709 K +I EAE QF+ G +T ER+ ++ID W ++++ +++N + V Sbjct: 160 KAALIYEAEKLSLSTIRQFKRGEITEVERFQRLIDTWHRTSEQLKIEVIENFEGTDV--- 216 Query: 710 DGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNV 769 N +YMMA SGARG+ +Q+RQL GMRGLM+ P G II+ PI +NFREGL + Sbjct: 217 ---------LNPVYMMAFSGARGNISQVRQLVGMRGLMSNPQGQIIDFPIRSNFREGLTL 267 Query: 770 LQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGG 829 +Y IS++GARKG+ DTAL+TAN+GYLTRRLVDVAQ ++++ DCGT GI + + EG Sbjct: 268 TEYIISSYGARKGIVDTALRTANAGYLTRRLVDVAQHVIISTTDCGTTRGIFLNDMKEGN 327 Query: 830 DVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCD 889 L++R++GRV A DV + +N + L+ ++ + VRS ++C Sbjct: 328 KTIYSLQNRLVGRVLARDVYNNQNIK-IASKNMEISGDLAILIAQHH-KKIFVRSPLTCQ 385 Query: 890 TDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESS 949 T+ VC CYG LA+G++++ GEA+G++AAQSIGEPGTQLTMRTFH GG S + Sbjct: 386 TNKLVCQLCYGWSLAQGNLVSIGEAVGIVAAQSIGEPGTQLTMRTFHTGGVFSGNVS-DQ 444 Query: 950 IQVKNKGSIKLSNV---KSVVNSSGKLVITSRNTELKLIDEFGRTKES-YKVPYGAVLAK 1005 I+ G + +N K + GK+ +++ + F +TK S ++ G V K Sbjct: 445 IKAPFDGFVVYNNPIAGKLIRTPEGKIAFLTKDEGSFSVYRFSKTKRSGDRIDQGTVSTK 504 Query: 1006 GDGEQVAGGETVAN 1019 G +V N Sbjct: 505 AGGFDPRKATSVPN 518 >UniRef50_A2T322 DNA-directed RNA polymerase subunit beta'' n=3 Tax=Moniliformopses RepID=RPOC2_ANGEV Length = 1414 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 163/614 (26%), Positives = 275/614 (44%), Gaps = 44/614 (7%) Query: 591 IVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKK 650 N+ + + AI ++ G+ T DQI GF A + S+GIDD++ K Sbjct: 9 FYNKMMDRTAIKHLIRRLISHFGITFTANILDQIKTLGFHQATNASISLGIDDLLTAPLK 68 Query: 651 HEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRD 710 +I +AE + ++ + G V + E+ ++I+ W A ++ + + M N + Sbjct: 69 SWLIQDAEKQGYSSEQHHRYGSVHSVEKLRQLIETWYATSEYLKQEMNPNFRMTD----- 123 Query: 711 GQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVL 770 N ++MM+ SGARGS +Q+ QL GMRGLM+ P G II+ PI NFREGL++ Sbjct: 124 -------PLNPVHMMSFSGARGSISQVHQLVGMRGLMSDPQGQIIDLPIQNNFREGLSLT 176 Query: 771 QYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGD 830 +Y IS +GARKG+ DTA++T+++GYLTRRLV+V Q +VV + DCGT GI++ +G Sbjct: 177 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRKKDCGTLRGILLNSNRDGRR 236 Query: 831 VKEPL-RDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCD 889 +P + R++GRV A+++ + RN + + L + V + +RS ++C Sbjct: 237 SIQPFSQQRLIGRVLADNLY--VNMRCIATRNQDISNELARRLVISQVRQIYIRSPLTCK 294 Query: 890 TDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESS 949 + F +C CYG +L H++ GEA+G+IA QSIGEPGTQLT+RTFH GG + AE Sbjct: 295 SMFCICQLCYGWNLTYNHLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGDIAE-H 353 Query: 950 IQVKNKGSIKLSN--VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGD 1007 I+ G IK V + G ++ L + E ++ VP ++L + Sbjct: 354 IRTPFNGIIKFDEDLVYATRTRHGHPAWLCQDN-LPVSIESKEKIHNFIVPAQSLLLVQN 412 Query: 1008 GEQVAGGETVANWDPH--------TMPVITEVSGFVRFTDMID--GQTITRQTDELTGLS 1057 + V + + P+ + + G + + + + I + Sbjct: 413 NQYVGSKQVIGQIRTTKSPLKERVKKPIYSNLDGELHWDTTVRHLSEHIHNNIHRVVKSG 472 Query: 1058 SLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPG--------TDMPAQYFLPGKAIVQL 1109 + +L L I + + + Sbjct: 473 HIWILSGKLHNLSKTSLFFYQNQDKIHVQSPSITNYKSLPNSSEKDTKRDLDFIDSNIAK 532 Query: 1110 EDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKET 1169 ++ + G + ++I + +I + +L RR +L G V Sbjct: 533 KESQTSNFGFSFSKITPNPSDSTNILSNI----ELKRNRRKNRVILLL---GRVKSRYRK 585 Query: 1170 KGKRRLVITPVDGS 1183 K V+ + Sbjct: 586 KSYSSFVLDIPNNG 599 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 99/285 (34%), Positives = 132/285 (46%), Gaps = 47/285 (16%) Query: 1093 TDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKE 1152 + Y A V G + GDTL + E + DI GLP+V L EAR Sbjct: 1124 IRLSKPYLATKGATVHSNYGDILKEGDTLITLIYERLRSGDIIQGLPKVEQLLEARSINS 1183 Query: 1153 PAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISD 1212 ++ E + F RLV Sbjct: 1184 VSLDLEKN----FLFWNNTMIRLV------------------------------------ 1203 Query: 1213 GPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSS 1272 G H + + ++VN+VQ VYR QGV+I+DKHIE+IVRQM K + G + Sbjct: 1204 GNFWSHFLGVKTSIEQCQLFLVNKVQKVYRSQGVQISDKHIEIIVRQMTSKVITLEDGMA 1263 Query: 1273 D-FLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRV 1331 + F GE +E SR + NR L K ++ +LG+TKASL T SFIS ASFQETTRV Sbjct: 1264 NVFSPGELIELSRAQRMNRAL----KESISHKPIVLGMTKASLNTTSFISEASFQETTRV 1319 Query: 1332 LTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA--YHQDRMRRRA 1374 L AA+ G+ D L+GLKENV+ G ++P GTG Q + +R Sbjct: 1320 LARAALQGRIDWLKGLKENVVPGSVVPTGTGSREVICQIDIEKRK 1364 >UniRef50_P60290 DNA-directed RNA polymerase subunit beta'' n=2 Tax=Physcomitrella patens RepID=RPOC2_PHYPA Length = 1330 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 146/462 (31%), Positives = 242/462 (52%), Gaps = 30/462 (6%) Query: 591 IVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKK 650 N+ + + AI ++++ G+ T DQ+ GF A ++ S+GIDD++ K Sbjct: 3 FYNKVMDRTAIKQLISRLITHFGITYTTYILDQLKTVGFKQATQAAISLGIDDLLTAPSK 62 Query: 651 HEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRD 710 +I +AE + ++ ++ G V A E+ ++I+ W A ++ + + M N + Sbjct: 63 SWLIQDAEQQGYISEKHYRYGNVHAVEKLRQLIETWYATSEYLKQEMNPNFRMTD----- 117 Query: 711 GQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVL 770 N ++MM+ SGARGS +Q+ QL GMRGLM+ P G II+ PI +NFREGL++ Sbjct: 118 -------PLNPVHMMSFSGARGSTSQVHQLVGMRGLMSDPQGQIIDLPIQSNFREGLSLT 170 Query: 771 QYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGD 830 +Y IS +GARKG+ DTA++T+++GYLTRRLV+V Q +VV + DCGT E I +TP+ Sbjct: 171 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRKVDCGTSENIFVTPLQNNYK 230 Query: 831 VKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDT 890 ++++GR+ A+++ + RN + L + +RS + C + Sbjct: 231 K----NNKLIGRILADNIYI--NGRCIAIRNQDITTNLVISLINFQRKGIFIRSPLICKS 284 Query: 891 DFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSI 950 +C CYG L G++I GEA+G+IA QSIGEPGTQLT+RTFH GG + AE I Sbjct: 285 MLWICQLCYGWSLTHGNLIELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGDIAE-HI 343 Query: 951 QVKNKGSIKL--SNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDG 1008 + G I+ ++V G N L ++ + + + +P ++L Sbjct: 344 RTPFNGIIQFDTNSVYPTRTRHGHPAWICNNN-LSVVIKSKKKLHNLVIPTQSLLLVQSN 402 Query: 1009 EQVAGGETVANWDPHTMP--------VITEVSGFVRFTDMID 1042 + V + +A T P + + +SG + ++ + Sbjct: 403 QYVESKQVIAEVRAKTSPFKEKVQKYIYSNLSGEMHWSSKVQ 444 Score = 236 bits (601), Expect = 6e-60, Method: Composition-based stats. Identities = 103/277 (37%), Positives = 131/277 (47%), Gaps = 45/277 (16%) Query: 1087 DVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFE 1146 D L + Y G AI+ G + GD L + E + DI GLP+V L E Sbjct: 1046 DDLSLVIRLAKPYLATGGAIIHNNYGEIVKEGDILITLIYERLKSGDIIQGLPKVEQLLE 1105 Query: 1147 ARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVER 1206 AR +I E FG+ K G + Sbjct: 1106 ARLTNPVSINLEK----GFGEWNKDMTNF--------------------FGSLWGYFLSA 1141 Query: 1207 GDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATI 1266 + +VN++Q VYR QGV I+DKHIE+IVRQM K Sbjct: 1142 Q----------------ISMEQSQVNLVNQIQKVYRSQGVNISDKHIEIIVRQMTSKVFT 1185 Query: 1267 VNAGSSD-FLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASF 1325 + G ++ FL GE +E++R K NR LE Y LLGITKASL T+SFIS ASF Sbjct: 1186 LEDGMTNGFLPGELIEFARAKRMNRALEEV----IPYKPVLLGITKASLNTQSFISEASF 1241 Query: 1326 QETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362 QETTRVL +AA+ G+ D L+GLKENVI+G +IP GTG Sbjct: 1242 QETTRVLAKAALRGRIDWLKGLKENVILGGIIPTGTG 1278 >UniRef50_UPI000186D8C3 DNA-directed RNA polymerase I largest subunit, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186D8C3 Length = 1659 Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 167/833 (20%), Positives = 315/833 (37%), Gaps = 136/833 (16%) Query: 122 SRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQ--ILTEEQYLDALEEFGDEFDAK 179 S L L I++++ +S + + + Q I++ ++ ++F D Sbjct: 180 SIESLRLKFLNEFIKQIILPKSCTHCKNPFKRIIKFQNKIISSITKVEIAKKFKDVPQNA 239 Query: 180 MGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMIL 239 + Q + ++ E LR+ E+ K L + + + + + Sbjct: 240 FNKGSKQET-TFITPKESRETLRKIWEES------KDLVEELMPILKNSNLSYPTDLFFM 292 Query: 240 TVLPVLPPDLRPLVPLDGGRFATSDLNDL------YRRVINRNNRLKRLLDLAAPDIIVR 293 V+ V PP RP+ + T D N Y I L++L Sbjct: 293 DVILVTPPKARPVEFANVKAVDTGDYNSFPPEYKVYIDGIRGATVLEKL----------H 342 Query: 294 NEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRS 353 LQ +D LLD+ A S K+ + L +++ K+G R +++GKRV+++ R+ Sbjct: 343 ECWLQLQNDIDTLLDSS----AARISLKKGISGLKQVLEKKEGVLRMHMMGKRVNFAART 398 Query: 354 VITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI------KAAKKMVEREEA- 406 VIT P L + + G+P+ A +L P + L + ++E E Sbjct: 399 VITPDPNLNIQEIGVPEYFAKKLTYPVGVNFFNVEELRKMVQNGPDVYPGATLIENENGS 458 Query: 407 --------------------------------VVWDILDEVIREHPVLLNRAPTLHRLGI 434 + ++ VLLNR PTLHR I Sbjct: 459 LIKLTGGEENRKKRIGISKLLLKSIEGDPTSFKTKKVHRHLLNGDIVLLNRQPTLHRPSI 518 Query: 435 QAFEPVLIEG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSP 493 A +++ K +LH C AYNADFDGD+M +H+P T ++ E ++ N+ L P Sbjct: 519 MAHIVKILKNEKTFRLHYSNCKAYNADFDGDEMNLHLPQTELSRSEGYNIVNVANHYLVP 578 Query: 494 ANGEPIIVPSQDVVLGLYYMTRDC---------------VNAKGEGMVLTGPK--EAERL 536 +G P+ QD ++ +T ++ K ++L P + ++L Sbjct: 579 KDGTPLGGLIQDHIVSTVRLTMKNQMFEKEDYHQLVYQGLSHKNGNIILLPPCIVKPKKL 638 Query: 537 Y----------------RSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILW 580 + L S + K+ + +E + + + K + Sbjct: 639 WSGKQIISTILINIIPKDKDLISFNGNAKISVKLWETGSPRKWMCGEEFKSDNE-MSESS 697 Query: 581 MIVPKG-LPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASV 639 +I+ KG L ++++ + + Y + G + + F + I A+ +G ++ Sbjct: 698 IILRKGILVTGVLDKQHFGATPFGLTHCLYELYGGECSSKFLNSIGRLSTAFLQMTGFTL 757 Query: 640 GIDDMVI----PEKKHEIISEAEAEVAEIQ------EQFQSGLVTAGER-YNKVIDIWAA 688 G++D+++ + + +II + EI E+ + L ER Y K ++ Sbjct: 758 GVEDILVKAKADKSRKKIIEKLRKCGDEIAAKALGLEEIPNDLYERLEREYFKNRTMFKG 817 Query: 689 ANDRVSKAMMDNLQTE-TVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM 747 D+ K +++ E + + N++ +M SGA+GS Q++ + G + Sbjct: 818 KLDQEYKVKLNSFTNEINKVCLPKGLISRFPENNLQLMVTSGAKGSTVNTMQISCLLGQI 877 Query: 748 --------------AKPDGSIIET------PITANFREGLNVLQYFISTHGARKGLADTA 787 + P +T I F G++ ++F R+GL DTA Sbjct: 878 ELEGKRPPFMISGKSLPSYKAFDTQPCAGGYIDNRFMTGISPQEFFFHCMAGREGLIDTA 937 Query: 788 LKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVL 840 +KT+ SGYL R L+ + + + D + I GGD E + Sbjct: 938 VKTSRSGYLQRCLIKHLEGVSIGYDGTVRDHDGTVIQFIYGGDGLEVQKSTFF 990 Score = 67.8 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 13/124 (10%) Query: 849 LKPGTADILVPRNTL---LHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLAR 905 L P T+ RN + E+ L+++ +S + Y L + Sbjct: 1097 LDPVTSK--YNRNHDFGVITEKLETLIKDYLDAKCSNQSKKEKKKVKNMVEAKYMLSLCQ 1154 Query: 906 GHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKS 965 GE +G++AAQSIGEP TQ+T+ TFH G +++ I ++ KS Sbjct: 1155 -----PGEPVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLR---EILMTASKS 1206 Query: 966 VVNS 969 + Sbjct: 1207 IKTP 1210 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 42/219 (19%), Positives = 78/219 (35%), Gaps = 26/219 (11%) Query: 16 EFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKY 75 E + I + + I + S E+K N P +DGL+ + GP + C Sbjct: 7 EINKIIFGIFNASDIYNLSVVEIKTSICFNALDH-PLKDGLYDL-VMGPSGMLKESCLTC 64 Query: 76 KRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDI 135 ++ I CG GHI L P + F K + + LL + Sbjct: 65 RQ-----TIRNCCG-----------HFGHINLPLPVINPLFHKEVLT----LLKLSCSYC 104 Query: 136 ERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLE 195 ++ + + L + E + L+ E D+ +A ++K + Sbjct: 105 YKLAIPPNLRNLFIYQMKLLDHGKMAEAEDLETKALNLKEMDSN---DAQNYVVKE-NYS 160 Query: 196 QECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKP 234 + ++L + N N + R + R+K L F++ P Sbjct: 161 EYLKELELDSNPVNIPSSRSIESLRLKFLNEFIKQIILP 199 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 23/151 (15%), Positives = 54/151 (35%), Gaps = 39/151 (25%) Query: 1214 PEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD 1273 + ++ G+ A R IV E+ DV+ + G+ ++ +H+ ++ M + + Sbjct: 1540 SNDVNKVVETLGIEAGVRIIVKELNDVFGVYGITVDHRHLLLVADYMTNQG--------N 1591 Query: 1274 FLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLT 1333 + ++ + + S + SF+ +T L Sbjct: 1592 YSPFNRIGLAD-------------------------------SSSPLQQMSFERSTGFLK 1620 Query: 1334 EAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 ++ V + D + ++ GR +GTG Sbjct: 1621 KSLVRNQEDFMNSPSARIMAGRFCKSGTGCF 1651 >UniRef50_P14248 DNA-directed RNA polymerase II subunit RPB1 n=48 Tax=Eukaryota RepID=RPB1_PLAFD Length = 2452 Score = 431 bits (1109), Expect = e-119, Method: Composition-based stats. Identities = 165/720 (22%), Positives = 279/720 (38%), Gaps = 114/720 (15%) Query: 5 LKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGP 64 L + + + +++ + P++I+ S E+ + Y+ P GL R+ Sbjct: 5 LNIPYSACELKRVKRLELGVLDPEIIKKISVCEIVNVDI--YKDGFPREGGLNDIRMG-- 60 Query: 65 VKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWF-------L 117 DY LCG C + V GHIELA P H F L Sbjct: 61 TIDYRTLCG-------------TCNMNVKYCP---GHFGHIELAKPMYHYGFMNVVLNVL 104 Query: 118 KSLPSRIGLLLD----MPLRDIERV----------------LYFESYVVIEGGMT----- 152 + + G LL ++ IE++ + + V E G+ Sbjct: 105 RCVCYHCGRLLCNVNSSKVKYIEKIKVNSLRLRKLAELCLGIRACDHSVEEEGLNINDNS 164 Query: 153 ------------NLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDL------ 194 N+ +Q +L + Y + E E D G + + ++ Sbjct: 165 LNNFYNNDLSNLNMNQQMLLNKSNYTNIFEMVSKE-DVDCGCVQPKYSREGPNMYIQFLH 223 Query: 195 --EQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPL 252 E++ ++ + +L+ + KK+ K + F P +ILT +P+ PP RP Sbjct: 224 SSEEDIDESKRKLSAEEALEILKKIRKEEMSILGFNSDRCVPASLILTCIPIPPPCARPY 283 Query: 253 VPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRR 312 V G + + DL ++ N +LKR D A ++++ +LQ + L DN Sbjct: 284 VQY-GNQRSEDDLTLKLLDIVKTNIQLKRQTDRGAKSHVLQDLCSLLQFHITTLFDNDIP 342 Query: 313 GRAI-TGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKK 371 G I T +K+P+K++ +KGK+GR R NL+GKRVD+S R+VIT P L + G+PK Sbjct: 343 GMPIATTRSKKPIKAIRTRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLNIDYIGVPKS 402 Query: 372 MALELFKPFIYGKLELRGLATTI------KAAKKMVEREEAVVWD--------------- 410 +A+ L L L + K + R+ +D Sbjct: 403 VAMTLTFCETVTPLNYDNLKKLVERGPYEWPGAKYIIRDNGTKYDLRHVRRNSEKELEYG 462 Query: 411 --ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAV 468 + + E +L NR P+LH++ I + ++ +L+ V + YNADFDGD+M + Sbjct: 463 YKVERHMTDEDYILFNRQPSLHKMSIMGHKAKILPYSTFRLNLSVTSPYNADFDGDEMNL 522 Query: 469 HVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVL 527 H+ + E + E + LM+ I+SP +P++ QD +L + T RD K E M L Sbjct: 523 HLAQSHETRSEIKHLMIVQRQIVSPQGNKPVMGIVQDSLLAIRKFTRRDNFLTKEEVMSL 582 Query: 528 TGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGL 587 Y + + A +K R G+ + L+ + Sbjct: 583 LIWIP----YWNHVIPTPAIIKPRAL-----WTGKQIFSMLLQFDDMNIEDDKNDTANNK 633 Query: 588 PYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYA----ARSGASVGIDD 643 VN + K + +NT T D + G AY+ + + I D Sbjct: 634 VGRDVNTNVNKDSSK--MNTSGNYYYGNSTNDNTDDYLEKGNAYSRSGNNHPNSPLSIGD 691 Score = 187 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 54/293 (18%), Positives = 112/293 (38%), Gaps = 34/293 (11%) Query: 581 MIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVG 640 +I L I+ + + +++ + +G T F + + G +V Sbjct: 766 IIKNNELLSGIICKRTVGSSSGSLIHVLWHEMGPDKTKDFLSALQKVTNNWLEYVGFTVS 825 Query: 641 IDDMVIPEKK----HEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKA 696 D++ K EI+ ++++EV+++ E+ Q G + + N+ ++ A Sbjct: 826 CSDIIASNKVLGKVREILDKSKSEVSKLVEKAQKGELECQPGKSLYESFETRVNNELNCA 885 Query: 697 MMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSI-- 754 + E N+I+ M SG++GS I Q+ G I Sbjct: 886 RE--------MAGKVASESLDERNNIFSMVASGSKGSIINISQIISCVGQQNVEGKRIPF 937 Query: 755 ------------------IETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYL 796 ++ ++ GL + F G R+G+ DTA KT+ +GY+ Sbjct: 938 GFNHRSLPHFIKFDYGPESRGFVSNSYLSGLTPQEVFFHAMGGREGIIDTACKTSETGYI 997 Query: 797 TRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVK--EPLRDRVLGRVTAED 847 RRL+ +D++V D + + + G D E + D+++ + ++ Sbjct: 998 QRRLIKAMEDVMVQYDRTVRNSYGDIIQFLYGEDGMAGEYIEDQIIDLMKLDN 1050 Score = 91.7 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 59/153 (38%), Gaps = 42/153 (27%) Query: 1214 PEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD 1273 +I + G+ AV R ++ E++ V +N +H+ ++ M +K Sbjct: 1939 SNDIVEIFEVLGIEAVRRALLKELRTVISFDSSYVNYRHLSILCDVMTQKGY-------- 1990 Query: 1274 FLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLAT--ESFISAASFQETTRV 1331 L+ IT+ + + + SF+ET + Sbjct: 1991 --------------------------------LMSITRHGINRVDKGPLIKCSFEETVEI 2018 Query: 1332 LTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 L EAA + D LRG+ EN+++G+L GTG Sbjct: 2019 LLEAAAFAQVDNLRGITENIMLGQLCKIGTGSF 2051 Score = 69.4 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 4/71 (5%) Query: 903 LARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSN 962 + + + GE +G +AAQSIGEP TQ+T+ TFH G S+ ++K ++ Sbjct: 1393 IFYKSLCHPGECVGALAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKEL----INI 1448 Query: 963 VKSVVNSSGKL 973 VK+V S + Sbjct: 1449 VKNVKTPSTTI 1459 >UniRef50_P60289 DNA-directed RNA polymerase subunit beta'' n=22 Tax=Spermatophyta RepID=RPOC2_AMBTC Length = 1373 Score = 431 bits (1109), Expect = e-119, Method: Composition-based stats. Identities = 152/495 (30%), Positives = 246/495 (49%), Gaps = 28/495 (5%) Query: 581 MIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVG 640 +++ + N+A+ A+ ++++ G+ T DQ+ GF A + S+G Sbjct: 3 VLMAERADLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFRQATLTSISLG 62 Query: 641 IDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDN 700 IDD++ K ++ +AE + +++ G V A E+ + I+IW A ++ + + M N Sbjct: 63 IDDLLTTPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPN 122 Query: 701 LQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIT 760 + FN +Y+M+ SGARG+A+Q+ QL GMRGLM+ P G +I+ PI Sbjct: 123 FRMTD------------PFNPVYIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQ 170 Query: 761 ANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGI 820 +N REGL++ +Y IS +GARKG+ DTA++T+++GYLTRRLV+V Q +VV DCGT GI Sbjct: 171 SNLREGLSLTEYTISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGI 230 Query: 821 MMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAV 880 ++P G + ++GRV A DV + RN + + + + Sbjct: 231 SVSPRNGVGVTERIFIQTLIGRVLANDVYM--GLRCIATRNQDIGIGLVNRFITSRAQPI 288 Query: 881 KVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGA 940 +RS +C + +C CYGR G+++ GEA+G+IA QSIGEPGTQLT+RTFH GG Sbjct: 289 YIRSPFTCRSTSWICQLCYGRSTTHGNLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGV 348 Query: 941 ASRAAAESSIQVKNKGSIKLSN--VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVP 998 + AE ++ + G IK + V G + +L + E +P Sbjct: 349 FTGGIAE-HVRAPSNGKIKFNEDLVHPTRTRHGHPAFLC-HIDLHVTIESQDIIHKVNIP 406 Query: 999 YGAVLAKGDGEQVAGGETVANWDPHT--------MPVITEVSGFVRF-TDMIDGQTITRQ 1049 + L + + V + +A T + ++ G + + TD+ T Sbjct: 407 PKSFLLVQNDQYVESEQVIAEIRAGTSTLKERVQKHIYSDSEGEMHWSTDVYHTPEYTHG 466 Query: 1050 TDELT-GLSSLVVLD 1063 L S L VL Sbjct: 467 NVHLLPKTSHLWVLS 481 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 92/288 (31%), Positives = 128/288 (44%), Gaps = 47/288 (16%) Query: 1093 TDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKE 1152 + + A V G + GDTL E + DIT GLP+V + E R Sbjct: 1094 IRLAKYHLATRGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDS 1153 Query: 1153 PAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISD 1212 ++ E K +G + P+E I Sbjct: 1154 ISMNLE--------KRVEGWNERI--TGFLGIPWEFFISAQ------------------- 1184 Query: 1213 GPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSS 1272 + +VN++Q VYR QGV+I+++HIE IVRQ+ K + G S Sbjct: 1185 -----------LTIVQSRISLVNKIQKVYRSQGVQIHNRHIETIVRQITSKVLVSEDGMS 1233 Query: 1273 D-FLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRV 1331 + F E + R + R LE + Y LLGIT+ASL T+SFIS ASFQETTRV Sbjct: 1234 NVFSPRELIGLLRAERIGRALEDD----ICYRAILLGITRASLNTQSFISEASFQETTRV 1289 Query: 1332 LTEAAVAGKRDELRGLKENVIVGRLIPAGTGY--AYHQDRMRRRAAGE 1377 L +AA+ + D L+GLKENV++G +IP GTG+ H R + E Sbjct: 1290 LAKAALRSRIDWLKGLKENVVLGGMIPVGTGFKGFVHHSREHNNISLE 1337 >UniRef50_Q20EX3 DNA-directed RNA polymerase subunit beta'' n=1 Tax=Oltmannsiellopsis viridis RepID=RPOC2_OLTVI Length = 1859 Score = 431 bits (1109), Expect = e-119, Method: Composition-based stats. Identities = 179/545 (32%), Positives = 273/545 (50%), Gaps = 52/545 (9%) Query: 588 PYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIP 647 N+ K ++ C G + TV +Q+ G+ A +G S+GIDD+ IP Sbjct: 72 RPVFFNRCFDKGRFKSLILWCILNFGEQKTVELVEQLKDIGYHQATLAGVSLGIDDLKIP 131 Query: 648 EKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVI 707 K ++++EA+ E I ++ G VT+ E++ ++ID W ++ + ++ + + Sbjct: 132 NSKAQLVAEAQLENQLILQEDLRGNVTSIEKFQRLIDTWHLTSETLKDNVIKAFRNTDI- 190 Query: 708 NRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGL 767 N +YMMA SGARG+ +Q+RQL GMRGLMA P G II PI +NFREGL Sbjct: 191 -----------LNPVYMMAFSGARGNVSQVRQLVGMRGLMADPQGQIINFPIQSNFREGL 239 Query: 768 NVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIE 827 + +Y IS +GARKG+ DTAL+TA SGYLTRRLVDVAQ ++V + DC T GI++ + Sbjct: 240 TLTEYVISCYGARKGVVDTALRTATSGYLTRRLVDVAQHVIVYQFDCQTTRGILLNTIKV 299 Query: 828 GGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVS 887 G L+ R++GRV+AED+ T V RN + + + +N + V VRS ++ Sbjct: 300 GNTTSISLQKRLVGRVSAEDIYNSKTNTKEVSRNQEITPILAEQISQNH-NQVLVRSALT 358 Query: 888 CDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAE 947 C GVC CYG LA+G +++ GEA+GV+AAQSIGEPGTQLTMRTFH GG S E Sbjct: 359 CQAKHGVCQLCYGWSLAQGSLVSLGEAVGVVAAQSIGEPGTQLTMRTFHTGGVFSGDVME 418 Query: 948 SSIQVKNKGSIKLS---NVKSVVNSSGKLVITSR-NTELKL-----------------ID 986 IQ + G ++ + S GK+ + EL L + Sbjct: 419 -QIQAPHNGIVEFQTALQGTLIRTSHGKIAFLTYTKGELTLKNTTKAQRGLNHHLSSSLT 477 Query: 987 EFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWD---------PHTMPVITEVSGFVRF 1037 + + P +L +GE V + +A + + V E++G V F Sbjct: 478 QTVVGETKIIFPSYTILYVRNGEAVKHKQFIAEYSSLVGENQSIKSSQKVNAEMTGEVFF 537 Query: 1038 TDMIDGQTITRQTDELTGLSSLV-------VLDSAERTAGGKDLRPALKIVDAQ-GNDVL 1089 ++ + ++++ V ++ + + +P +I A N VL Sbjct: 538 ENVFLRVESSEESEKTYRSFKFSDIWILSCVTNTLKFKSNFSLTKPGDRINTATVINQVL 597 Query: 1090 IPGTD 1094 + TD Sbjct: 598 LKKTD 602 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 123/477 (25%), Positives = 190/477 (39%), Gaps = 78/477 (16%) Query: 937 IGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYK 996 G A ++ + ++ V N+ +I +G + TS+ T L + + + Sbjct: 1440 FKGVAPHSSEKLNVPVFNQTNIFGLADSDASVKAGAVFETSKYTGEILKSIESKQQRLFN 1499 Query: 997 VPYGAV---LAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDEL 1053 P G V L +G+ + P ++ + + D Q + Sbjct: 1500 TPLGVVEKGLQLQNGQT-HLSQLETKTIPSSLSPDSTQISPTQRVLTSDDQKTFNVLGKK 1558 Query: 1054 TGLSSLVVLDSAERTAGGKDL---RPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLE 1110 + + + K + P L I + + + + ++ Sbjct: 1559 PLVKVGDFVRYGDFLTCDKKISVSEPGLVIKITSSKITI----RIAKPVLVSSGGVFHVQ 1614 Query: 1111 DGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETK 1170 G I L + T DI G+P++ +LFEAR ISG + Sbjct: 1615 HGDFIEENAPLVTLTYTRLKTGDIVQGIPKIEELFEAR----------ISGTLH------ 1658 Query: 1171 GKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVT 1230 +L I + + + L + Sbjct: 1659 --NQLAIIFENYKQKFSSAYAARKSL------------------------------ERIQ 1686 Query: 1231 RYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANR 1290 + IV V +VY+ QGV I DKH+E+IVRQM K I+ +G S L GE V V+ AN+ Sbjct: 1687 QIIVENVLNVYQSQGVTIADKHVEIIVRQMTSKVRILESGRSGLLRGELVTLESVENANK 1746 Query: 1291 ELEANGKVGATYSRDLLGITKASLATE-SFISAASFQETTRVLTEAAVAGKRDELRGLKE 1349 + A Y+ L+GITKA+L + SFISAASFQETTR+L+ AA+ K D LRGLKE Sbjct: 1747 SIH---GQKAEYAPVLVGITKAALDIDKSFISAASFQETTRILSRAAIERKTDFLRGLKE 1803 Query: 1350 NVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQVTAEDASASLAELLNAGLGGSDN 1406 NVI+G+LIPAGTG++ +P P S + +L+N L SDN Sbjct: 1804 NVILGQLIPAGTGFS----------VSFSPEDPN-----HSKKVVKLVNQYLFSSDN 1845 >UniRef50_P06274 DNA-directed RNA polymerase subunit beta'' n=9 Tax=Embryophyta RepID=RPOC2_MARPO Length = 1386 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 160/635 (25%), Positives = 282/635 (44%), Gaps = 59/635 (9%) Query: 591 IVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKK 650 N+ + + AI ++++ G+ T DQ+ GF A S+GIDD++ K Sbjct: 9 FYNKVMDRTAIKQLISRLIAHFGITYTTHILDQLKTLGFQQATFGAISLGIDDLLTAPSK 68 Query: 651 HEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRD 710 +I +AE ++ G + A E+ ++I+ W A ++ + + M N + Sbjct: 69 SWLIEDAEQYGNLSEKHHNYGSLHAVEKLRQLIETWYATSEYLKQEMNPNFRITD----- 123 Query: 711 GQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVL 770 N ++MM+ SGARGS +Q+ QL GMRGLM+ P G II+ PI +NFREGL++ Sbjct: 124 -------PLNPVHMMSFSGARGSTSQVHQLVGMRGLMSDPQGQIIDLPIQSNFREGLSLT 176 Query: 771 QYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGD 830 +Y IS +GARKG+ DTA++T+++GYLTRRLV+V Q +VV + DCGT GI + + E Sbjct: 177 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRKVDCGTLYGINVNNLSE--- 233 Query: 831 VKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDT 890 K + +++GRV AE++ + PRN + + L + +RS ++C + Sbjct: 234 KKNNFQQKLIGRVIAENIYIDH--RCIAPRNQDIGALLANRLITLKTKQIFLRSPLTCKS 291 Query: 891 DFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSI 950 +C CYG L+ G++I GEA+G+IA QSIGEPGTQLT+RTFH GG + AE + Sbjct: 292 MNWICQLCYGWSLSHGNLIEMGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGDIAE-HV 350 Query: 951 QVKNKGSIKLSN--VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDG 1008 + G I+ + V G +T L L+ + + +P ++L + Sbjct: 351 RTPFNGIIEFNENFVYPTRTRHGHPAWMC-HTNLFLVIKSKNKVHNLTIPPKSLLLVQNN 409 Query: 1009 EQVAGGETVANWDPHTMP--------VITEVSGFVRFTDMIDGQTITRQTDELTGLSSLV 1060 + V + +A T P + + + G + ++ T R E + + Sbjct: 410 QYVESKQVIAEIRAKTSPFKEKVQKYIYSNLEGEMHWS------TKVRHASEYIHSNIHL 463 Query: 1061 VLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDT 1120 +L + + + ND+ + + P + + + + Sbjct: 464 ILKTCHIWILSGNFH-------KKNNDLSVLFYKNQDKIDFPISLTKEKNEFSFVKNKTQ 516 Query: 1121 LARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPV 1180 L F + + I ++++ + ++ Sbjct: 517 LNLFLFH-----------------FYLYKKNKIFIKSQLTNNILNKINNSKNYNFILQEY 559 Query: 1181 DGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPE 1215 + K + L ++++ V+ + Sbjct: 560 NIKKKKNFYFLKNKNLTCPLFLKIKKNGVLKNNEI 594 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 104/296 (35%), Positives = 141/296 (47%), Gaps = 48/296 (16%) Query: 1068 TAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQE 1127 + K P+ +I+ N +I + Y G A + G I GDTL + E Sbjct: 1072 ISKYKTSYPSGQIISININYFII---RLAKPYLATGGATIHNNYGEFIKEGDTLITLIYE 1128 Query: 1128 SGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYE 1187 + DI GLP+V L EAR +I E F + + Sbjct: 1129 RLKSGDIIQGLPKVEQLLEARPINSVSINLEN----GFEDWNNDMIKFIGN--------- 1175 Query: 1188 EMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVK 1247 G + + G +V+++Q VY+ QGV+ Sbjct: 1176 -----------LWGFFLSTKISMEQGQIN----------------LVDQIQKVYQSQGVQ 1208 Query: 1248 INDKHIEVIVRQMLRKATIVNAGSSD-FLEGEQVEYSRVKIANRELEANGKVGATYSRDL 1306 I++KHIE+IVRQM K + G ++ FL GE +E+SR + NR LE Y L Sbjct: 1209 ISNKHIEIIVRQMTSKVITLEDGMTNVFLPGELIEFSRTQKMNRALEE----AVPYKPIL 1264 Query: 1307 LGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362 LGITKASL T+SFIS ASFQETTRVL +AA+ G+ D L+GLKENVI+G L+PAGTG Sbjct: 1265 LGITKASLNTQSFISEASFQETTRVLAKAALKGRIDWLKGLKENVILGGLVPAGTG 1320 >UniRef50_C4Q0S7 DNA-directed RNA polymerase n=1 Tax=Schistosoma mansoni RepID=C4Q0S7_SCHMA Length = 1784 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 179/995 (17%), Positives = 325/995 (32%), Gaps = 233/995 (23%) Query: 237 MILTVLPVLPPDLR-PLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNE 295 + + + P R P G +Y R++ R L +++ V N Sbjct: 311 FFMDNVLLSPSLCRWPRHV--GNLVYEHPETAVYVRIVKRAQCLHNIVEFIRQHNEVSNS 368 Query: 296 KR-------------------------------MLQEAVDALLDNGRRGRAI-------T 317 +LQ AV+ + D + Sbjct: 369 VDVNKPVEPKSTTSNGDLIDDAQSDGALKLATVLLQAAVNGIYDMNMAITPLGLESRNGI 428 Query: 318 GSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELF 377 SN L L ++ K+G FR +++GKRV+++ RSVI+ P L + + G+P A L Sbjct: 429 SSNSVRLPGLRQRLERKEGLFRMHMMGKRVNFACRSVISPDPNLSVTEVGVPLFFAFRLT 488 Query: 378 KPFIYGKLELRGLATTIKAA---------------------------------------K 398 P K L L + K Sbjct: 489 FPTPVTKFNLVHLRQLVMNGPNNYPGATSIQFSNGVITMLPQNDTPQAKKKREMLALRLK 548 Query: 399 KMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIE---GKAIQLHPLVCA 455 ++ ++ + + ++ +++NR PTLHR +QA +I+ K ++LH C Sbjct: 549 PLISGKDNIPIVVNRHLLDGDMLIMNRQPTLHRPSMQAHRVRIIKCVGAKTLRLHYSNCK 608 Query: 456 AYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT- 514 AYNADFDGD+M H + A+ E L + L P +G P+ QD V+ +T Sbjct: 609 AYNADFDGDEMNGHFVQSYAAKAELETLASVPHQYLVPKDGTPLAGLIQDHVIAAVKLTM 668 Query: 515 RDCVNAKGEGMVL----TGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLK 570 RD + + L P A S +K I + G+ V T L Sbjct: 669 RDRFFEHADYLDLVYHALRPLFAINSQTSSGPPSIITIKPAICWPKCLWTGKQVISTLLI 728 Query: 571 DTTVG--------------RAILWMIVPKG----------------LPYSIVNQALGKKA 600 + T +A LW V G L +++++ + Sbjct: 729 NLTPTGLLPLNATLIGRRTKAELWSGVAPGGPTPLSDVDLVICDGYLASGMLDKSHIGSS 788 Query: 601 ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISE---- 656 + +++ Y G + + I + ++G+ D+++ + E Sbjct: 789 STGLIHCVYEAYGPESASCLLNGISLLANRFLKFIAFTMGLKDILLSHRADEERQRRFSN 848 Query: 657 --------------------AEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKA 696 E+ V + Q Q T ++ + A DR+ +A Sbjct: 849 LKDLGLCAFADTFSLKPDELTESNVKRLYRQAQFPSSTDQSSLKRLAQLDMAIKDRLKRA 908 Query: 697 MMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM--------- 747 + G N++ +M GA+G +Q++ G + Sbjct: 909 QDAVCDSAI----PGGLYVGFPENNLQLMVHVGAKGGMVNAQQMSVALGQIELEGRRVPL 964 Query: 748 -----AKPDGSIIE------TPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYL 796 P + TA F L + F + R GL DTA+KT+ SGYL Sbjct: 965 MLSGKTLPSFPPYDVRPRAGGMCTARFLTSLPAQELFFHSMAGRDGLVDTAVKTSRSGYL 1024 Query: 797 TRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRD---RVLGRVTAEDVLKPGT 853 R + +DL ++ D G + G D + + + +G D + Sbjct: 1025 QRSAIKHLEDLSISYDGTVRDSGSNIIQFRYGDDGVDVCQAGFLQPIGLHFFADNINLMK 1084 Query: 854 ADILVPRNTLLHEQWCDLLEENSVD-------------------AVKVRSVVSCDTDFGV 894 + + + L E+N + R ++ + G Sbjct: 1085 IRWHSDKINTDNPAYAHLFEKNILPKPIQMMADQVGVKRQGILHKTVSRHKLAKLFNIGK 1144 Query: 895 CAHCYGRDLARGHIIN-----------------------------------KGEAIGVIA 919 AH + + ++ G+ +G++A Sbjct: 1145 MAHKALKIMETEQQVSGKDKIMNEIIPEPPCAAAAELRDLCLAKIINAQAPPGDPVGLLA 1204 Query: 920 AQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVI---- 975 AQS+GEP TQ+T+ TFH G +++ I +S ++ ++ I Sbjct: 1205 AQSVGEPSTQMTLNTFHFAGRGEMNVTLGIPRLR---EILMSGSSNISTPCMEVPIWPTK 1261 Query: 976 TSRNTELKLIDEFGRTK--ESYKVPYGAVL-AKGD 1007 ++ ++ +F + K E+ ++P G + D Sbjct: 1262 EAQQLSEQIAKKFYKLKLSETLQLPIGQKVNYVSD 1296 Score = 59.0 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 45/157 (28%), Gaps = 21/157 (13%) Query: 12 TKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECL 71 + ++ S D +R S +V + T + GL FG + Sbjct: 4 ANVGQIVGLRYGFYSSDEVRRLSVRKVTNDLAFDKFTGRGVDGGLHDVN-FGVIG----- 57 Query: 72 CGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMP 131 C CG++ T GHIE + P + + L + Sbjct: 58 ---------YSETCAHCGMDFTDCP---GHCGHIEFSKPVFNPFMFDVLYKIVKSFC-FG 104 Query: 132 LRDIERVLYFES--YVVIEGGMTNLERQQILTEEQYL 166 + Y S Y++ + + L ++ Sbjct: 105 CFRLYSAEYLASALYLLGAPVGKLPGKLKTLEIKELE 141 >UniRef50_B9VH97 DNA-directed RNA polymerase n=1 Tax=Syntrichia ruralis RepID=B9VH97_TORRU Length = 1358 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 147/458 (32%), Positives = 243/458 (53%), Gaps = 27/458 (5%) Query: 591 IVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKK 650 N+ + + AI ++++ G+ T DQ+ GF A ++ S+GIDD++ K Sbjct: 9 FYNKVIDRTAIKQLISRLIAHFGITYTTHILDQLKSIGFKQATQAAISLGIDDLLTAPSK 68 Query: 651 HEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRD 710 +I +AE + ++ ++ G V A E+ ++I+ W A ++ + + M N + Sbjct: 69 GWLIQDAEQQGYTSEKHYRYGNVHAVEKLRQLIETWYATSEYLKQEMNPNFRMTD----- 123 Query: 711 GQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVL 770 N ++MM+ SGARGS +Q+ QL GMRGLM+ P G II+ PI +NFREGL++ Sbjct: 124 -------PLNPVHMMSFSGARGSTSQVHQLVGMRGLMSDPQGQIIDLPIQSNFREGLSLT 176 Query: 771 QYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGD 830 +Y IS +GARKG+ DTA++T+++GYLTRRLV+V Q +VV + DCGT +GI P+ + Sbjct: 177 EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRKVDCGTSQGIFAVPLRDYSK 236 Query: 831 VKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDT 890 K + +++GR+ AE++ + RN + L + +RS ++C + Sbjct: 237 -KSNHQQKLIGRILAENIY--VNKRCIATRNQDITTTLVMSLRTIKKKPIFIRSPLTCKS 293 Query: 891 DFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSI 950 +C CYG L G++I GEA+G+IA QSIGEPGTQLT+RTFH GG + AE + Sbjct: 294 MIWICQLCYGWSLTHGNLIELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVYTGDIAE-HV 352 Query: 951 QVKNKGSIKLS--NVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDG 1008 + G I+ + +V G S N L +I + + + +P ++L Sbjct: 353 RTPFNGIIQFNIDSVYPTRTRHGHPAWISNNN-LPVIIKSKKKLHNLVIPPQSLLLVQTN 411 Query: 1009 EQVAGGETVANWDPHTMP--------VITEVSGFVRFT 1038 + V + +A P + + +SG + ++ Sbjct: 412 QYVESKQIIAEVRAKISPFKEKVQKYIYSNLSGEMHWS 449 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 98/271 (36%), Positives = 129/271 (47%), Gaps = 45/271 (16%) Query: 1093 TDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKE 1152 + Y A + G + GDTL + E + DI GLP+V L EAR Sbjct: 1074 IRLAKPYLATDGATIHNNYGEIVKEGDTLITLVYERLKSGDIIQGLPKVEQLLEARPINS 1133 Query: 1153 PAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISD 1212 +I E G + K+ G + Sbjct: 1134 VSIHLE-KGFEDWNKDMTNF-----------------------FGSLWGYFLSA------ 1163 Query: 1213 GPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSS 1272 + +V+++Q VYR QGV+I+DKHIE+IVRQM K + G + Sbjct: 1164 ----------RISMEQSQLNLVDQIQKVYRSQGVQISDKHIEIIVRQMTSKVITLEDGMT 1213 Query: 1273 D-FLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRV 1331 + FL GE +E+ R K NR LE Y LLGITKASL T+SFIS ASFQETTRV Sbjct: 1214 NGFLPGELIEFLRAKRMNRALEEV----IPYKPVLLGITKASLNTQSFISEASFQETTRV 1269 Query: 1332 LTEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362 L +AA+ G+ D L+GLKENVI+G ++PAGTG Sbjct: 1270 LAKAALRGRIDWLKGLKENVILGGIVPAGTG 1300 >UniRef50_B7P2L8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ixodes scapularis RepID=B7P2L8_IXOSC Length = 1640 Score = 428 bits (1100), Expect = e-118, Method: Composition-based stats. Identities = 151/762 (19%), Positives = 275/762 (36%), Gaps = 173/762 (22%) Query: 229 QSGNKP-EWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAA 287 S P + L L V P RP+ + G R +V+ + + +L L Sbjct: 286 DSQKHPVDMFFLEALVVPPTRFRPMNFMHG-RKYEHPQTVSLSKVLQCCDAARAVLKLME 344 Query: 288 PDI---------------------------------IVRNEKRMLQEAVDALLDNGRRGR 314 + + LQ AV+ ++D+ Sbjct: 345 RNQDSESSEDTMEMQRLQVCTFRQVVDKLPGKDLSSKLHVAWNNLQVAVNVVVDSELD-- 402 Query: 315 AITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMAL 374 S+ + + +++ K+G FR++++GKRV+Y+ RSVI+ PY+ + + G+P A Sbjct: 403 --RLSSNKATPGIKQILEKKEGLFRKHMMGKRVNYAARSVISPDPYIGVDEIGVPMVFAT 460 Query: 375 ELFKPFIYGKLELRGLAT------TIKAAKKMVE---------------REEAVVWDIL- 412 L P + L + +VE R EA+ ++ Sbjct: 461 RLSYPEPVTDRNVSELRKAVINGPNVYPGALLVEHGDGTVTRLDPTNRVRREAIAKQLMT 520 Query: 413 ----------------DEVIREHPVLLNRAPTLHRLGIQAFEPVLIEG-KAIQLHPLVCA 455 + +LLNR PTLH+ I A + ++ G K ++LH C Sbjct: 521 PSDSFKNTLARCKTVHRHLRTGDMLLLNRQPTLHKPSIMAHQARVLPGEKTLRLHYANCK 580 Query: 456 AYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTR 515 YNADFDGD+M H P + A+ EA + L P +G P+ QD V+ +T Sbjct: 581 CYNADFDGDEMNAHFPQSELARAEASQVATVNRQYLVPKDGTPLSGLIQDHVIAGSLLT- 639 Query: 516 DCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKV---RITEYEKDANGELVAKTSLKD- 571 ++ +L L + + +KV I + E G+ V T L + Sbjct: 640 -------MQGRFFNREDYNQLVYGALTFVPSSIKVLPPAIQKPETLWTGKQVLSTVLINC 692 Query: 572 --------TTVGRAIL-----------------------WMIVPKGLPYSIVNQALGKKA 600 T G+A + +I L ++++A Sbjct: 693 IPRNKPAPTVEGKAKIPAKAWLRPGSEANEAEAQMSEGQVVIRDGELLCGVLDKAHYGPT 752 Query: 601 ISKMLNTCYRILGLKPTVIFADQIMYTGFAYA-ARSGASVGIDDMVI----PEKKHEIIS 655 +++ CY + G + + + G ++GI+D+++ +K+ +I+ Sbjct: 753 QFGLVHVCYELYGGAISSLVLTAFARLFTHFLQTHVGFTLGIEDILVTLKADKKRKKIMK 812 Query: 656 EAEAEVA----------------EIQEQFQSGLVTAGERYNKVIDIW-AAANDRVSKAMM 698 A E ++ E + ++ +RY K +D + D V+ + Sbjct: 813 MARKEGDGAAKKALGIEEDIAPEDLMESLRGAHLSRNDRYLKQLDASMKSVTDDVNNQIN 872 Query: 699 DNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM----------- 747 + ++ K+ N++ +M SGA+G Q++ + G + Sbjct: 873 KACIPDGLL-------KKFPENNLQLMVQSGAKGGMVNCMQISCLLGQIELEGRRVPLML 925 Query: 748 ---AKPDGSIIET------PITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTR 798 P +T + F G+ ++F R+GL DTA+KT+ SGYL R Sbjct: 926 SGRTLPSFLPYDTSPRAGGFVDGRFLTGIRPQEFFFHCMAGREGLVDTAVKTSRSGYLQR 985 Query: 799 RLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVL 840 L+ + L+V D G D + L+ ++L Sbjct: 986 CLIKHLEGLMVGYDQTVRDSDGS---FQYGEDGLDVLKMQML 1024 Score = 71.3 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 2/67 (2%) Query: 899 YGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSI 958 Y R+L I + GE +G++AAQSIGEP TQ+T+ TFH G +++ + Sbjct: 1204 YLRNL--RSICDPGEPVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRMREILMV 1261 Query: 959 KLSNVKS 965 +N+ + Sbjct: 1262 ASANIAT 1268 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 42/129 (32%), Gaps = 23/129 (17%) Query: 11 QTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYEC 70 + D + + S D + S V ET + P + GL + + GP Sbjct: 5 KIPYRSVDGVSFNVFSTDELLRLSVLSVTCSETFDI-VGHPTKGGLHDS-LLGP------ 56 Query: 71 LCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDM 130 R +C CG+ +GHI L T + F ++ + LL Sbjct: 57 --------SDRDEVCATCGLGFVACP---GHIGHISLPLLTFNPLFFRT----LYQLLRG 101 Query: 131 PLRDIERVL 139 R+L Sbjct: 102 SCFGCARLL 110 >UniRef50_P41606 DNA-directed RNA polymerase subunit beta'' n=45 Tax=Pinaceae RepID=RPOC2_PINTH Length = 1224 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 149/461 (32%), Positives = 238/461 (51%), Gaps = 29/461 (6%) Query: 591 IVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKK 650 N+ + K AI K+++ G+ T DQ+ +GF A + S+GIDD++ K Sbjct: 22 FYNKVMDKTAIKKLISRLIDHFGMTYTSHILDQLKTSGFQQATDTAISLGIDDLLTAPSK 81 Query: 651 HEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRD 710 ++ +AE + + ++Q G V A E+ + I+IW A ++ + K M N Sbjct: 82 GWLVQDAEQQGSVSEKQNHYGNVHAVEKLRQSIEIWYATSEYLRKEMNPNFSMTD----- 136 Query: 711 GQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVL 770 N +++M+ SGARGS +Q+ QL GMRGLM+ P G II+ PI N REGL++ Sbjct: 137 -------PLNPVHVMSFSGARGSTSQVHQLVGMRGLMSDPQGQIIDLPIRRNLREGLSLT 189 Query: 771 QYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGD 830 +Y IS +GARKG+ DTA++TA++GYLTRRLV+V Q +VV DCGT +GI ++P+ Sbjct: 190 EYIISCYGARKGVVDTAVRTADAGYLTRRLVEVVQHIVVRRTDCGTIQGIFVSPIRGRER 249 Query: 831 VKEPLRDR---VLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVS 887 + + R ++GRV A+DV + RN + + L + +R+ + Sbjct: 250 DRNEIVVRTQILIGRVLADDVYINR--RCIATRNQDIGVGLANQLINLRTQPIYIRTPFT 307 Query: 888 CDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAE 947 C + +C CYGR H+I GEA+G+IA QSIGEPGTQLT+RTFH GG + AE Sbjct: 308 CKSISRICQLCYGRSTTHSHLIELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGDIAE 367 Query: 948 SSIQVKNKGSIKLSN--VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAK 1005 I+ G I+ + V +G N L + + ++ +P ++L Sbjct: 368 -HIRAPFNGKIEFNENLVYPTRTRNGHPAYLCHNN-LSITIDGQDQVQNLTIPPQSLLLV 425 Query: 1006 GDGEQVAGGETVANWDPHTMP--------VITEVSGFVRFT 1038 + + V + +A T + +++ G + ++ Sbjct: 426 QNDQYVESEQLIAEVRARTSSFKEKVRKNIYSDLEGEMHWS 466 Score = 224 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 100/277 (36%), Positives = 127/277 (45%), Gaps = 45/277 (16%) Query: 1097 AQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAIL 1156 Y KA V G + GDTL + E + DI GLP+V L EAR Sbjct: 945 KPYLATRKATVHSHYGKILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEAR-------- 996 Query: 1157 AEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEA 1216 I+ R L G + Sbjct: 997 ----------------LNNSISMNLKESFENWTGDMTRFLGSLWGLFISA---------- 1030 Query: 1217 PHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FL 1275 + ++VN++Q VYR QGV+I DKHIEVIVRQM K I G+++ F Sbjct: 1031 ------RITMEQSQIHLVNQIQKVYRSQGVRIGDKHIEVIVRQMTSKVLISEDGTANVFS 1084 Query: 1276 EGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEA 1335 GE + SR + +R LE Y LLGIT+ASL T+SFIS ASFQET RVL +A Sbjct: 1085 PGELIVLSRAQRMDRALEE----AIYYQTMLLGITRASLNTQSFISEASFQETARVLAKA 1140 Query: 1336 AVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRR 1372 A+ G+ D L+GLKENVI+G +IPAGTG H+ R Sbjct: 1141 ALQGRIDWLKGLKENVILGGMIPAGTGQHIHRSGKRN 1177 >UniRef50_A2GJD3 DNA-directed RNA polymerase (Fragment) n=3 Tax=Trichomonas vaginalis RepID=A2GJD3_TRIVA Length = 1004 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 161/738 (21%), Positives = 268/738 (36%), Gaps = 134/738 (18%) Query: 343 LGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAA----- 397 +GKRV++S RSVI PY+ + G+P A L P L+ I Sbjct: 1 MGKRVNFSARSVIAPDPYVATDEVGVPAVFAKTLSYPERVRDYNKERLSKAILNGADNYP 60 Query: 398 ----------------------------KKMVEREEAVVWDILDEVIREHPVLLNRAPTL 429 K E + W + I VL+NR PTL Sbjct: 61 GANLIIDPYGQTFQLKGMKESLRQSYASKIFAESDGDFPWTVGRHAINGDYVLINRQPTL 120 Query: 430 HRLGIQAFEPVLIE-GKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTN 488 HR+ I A ++ + I++H CA++NADFDGD++ +H+P A+ EA L +S+ Sbjct: 121 HRVSILAMRVKVLPKQRTIRMHYSNCASFNADFDGDEINLHLPQNELARAEANILSLSSR 180 Query: 489 NILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVLTGPKEAERLYRSGLASLHAR 547 + ++P G PI QD V +T ++ K + L + + Sbjct: 181 HYITPTAGNPIRGLIQDHVDAGALLTMKNNFLTKTQYQEL-----VFTAFGGEINHKLEM 235 Query: 548 VKVRITEYEKDANGELVAKTSLKDTT-----------------------VGRAILWMIVP 584 + I + + G+ V T + + T V Sbjct: 236 LPPAIIKPTQLWTGKQVISTIIINLTKNLSDQMMDLTSNSKISSILCYGCKEETTVRFVD 295 Query: 585 KGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDM 644 L I+++A + M++T Y + G F + + G S GI DM Sbjct: 296 GHLCTGIIDKAQFGASKFGMVHTIYELYGSDMASRFLTMLTRLFTYFMQCHGFSCGIADM 355 Query: 645 VIPEK----KHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVID-IWAAANDRVSKAMMD 699 ++ K + ++ E + + F T +Y + D +W D+ K D Sbjct: 356 IVNHKGEGMREKMKEETDKVAIKTANDFVEEFGTKETQYMNLKDRLWDLIKDKDMKERYD 415 Query: 700 NLQTETVIN---------RDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAK- 749 ++ + K N + MM SGA+GS Q++ + G + Sbjct: 416 HMIMGNLNKAASDTLNAIFPANITKPFPQNHLTMMTSSGAKGSVVNATQISCLLGQQSLE 475 Query: 750 -------------PDGSIIE------TPITANFREGLNVLQYFISTHGARKGLADTALKT 790 P ++ +++ F GL +Y+ G R+GL DTA+KT Sbjct: 476 GKRVPLMRSGKALPSFEFMDMSPQSGGFVSSRFLTGLTPEEYYFHAMGGREGLTDTAVKT 535 Query: 791 ANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLK 850 AN+GYL R ++ + L + D + + G D +P++++ + T D + Sbjct: 536 ANTGYLQRCIIKNIEGLRASYDGTVRDADDTIVQFLYGEDGIDPMQNKYI---TKFDFML 592 Query: 851 PGTADILVPRN-TLLHEQWCDLLEENSVDAVKV-------------RSVVSCDTDFGVCA 896 N + E+ L + +D KV R V S F Sbjct: 593 KNIDSYSQKLNIEKVGEKANCDLAQKVIDGEKVNENSLVQATYHPHRYVGSISQSFENAL 652 Query: 897 HCYGRDLARG--------------------HIINKGEAIGVIAAQSIGEPGTQLTMRTFH 936 + Y DL + I GE +GVIAA++IGEP TQ+T+ TFH Sbjct: 653 NKYCDDLKKKGTDEDTIKNLRAVAVFNYFSSQIQPGEVVGVIAAEAIGEPATQMTLNTFH 712 Query: 937 IGGAASRAAAESSIQVKN 954 + G +++ Sbjct: 713 LAGYGGTNVTLGIPRLRE 730 >UniRef50_C7BEK6 DNA-directed RNA polymerase n=1 Tax=Pedinomonas minor RepID=C7BEK6_PEDMN Length = 1240 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 174/466 (37%), Positives = 251/466 (53%), Gaps = 35/466 (7%) Query: 591 IVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKK 650 N+ K + +++ R G T+ +++ GF +A ++G S+ IDD+ IP++K Sbjct: 7 FFNRCFDKSKLKGLISWSLRNYGEAVTLDLVEKLKEVGFLWATKAGISLSIDDLKIPKEK 66 Query: 651 HEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRD 710 ++ +AE +QF SG +T ER ++ID W ++ + + ++ N + Sbjct: 67 GALLLDAEDVATRASQQFLSGNLTTVERLQQLIDGWHRTSENLKQEVVTNFRRTD----- 121 Query: 711 GQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVL 770 N +YMMA SGARG+ +Q+RQL GMRGLMA P G II+ PI +NFREGL + Sbjct: 122 -------PLNPVYMMAFSGARGNISQVRQLVGMRGLMADPQGRIIDFPIRSNFREGLTLT 174 Query: 771 QYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGD 830 +Y IS +GARKG+ DTAL+TA SGYLTRRLVDVAQ +VV+ DC T +GI +T + +G Sbjct: 175 EYVISCYGARKGIVDTALRTATSGYLTRRLVDVAQHVVVSLYDCETEQGIPLTSLKQGTK 234 Query: 831 VKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDT 890 PL +R+LGRV AE+V PG + PRNT + E L + + + VRS + C + Sbjct: 235 TLLPLSERILGRVLAEEV--PG----IAPRNTCISEYLSYKLSQAK-ETLLVRSPLLCKS 287 Query: 891 DFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSI 950 GVC CYG LA +++ GEA+G+IAAQSIGEPGTQLTMRTFH GG S + Sbjct: 288 RNGVCQLCYGWSLAHNELVSIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFSGEI-IDQV 346 Query: 951 QVKNKGSIKLSNV---KSVVNSSGKLVITSRNTELKLIDEFGRTKESYKV--PYGAVLAK 1005 Q GS+ V S GK+ +R I + +E ++ P ++L Sbjct: 347 QAPISGSVSFPKPLKGSLVRTSYGKIGFLTREAGTLTIHSGEKHEERKELSFPLQSILFV 406 Query: 1006 GDGEQVAGGETVANWD----------PHTMPVITEVSGFVRFTDMI 1041 ++V E + + V G V F D+I Sbjct: 407 RQAQKVEAAEILLEYASAATDQDQGIQANHLVTAPEKGEVFFEDVI 452 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 105/339 (30%), Positives = 146/339 (43%), Gaps = 59/339 (17%) Query: 1034 FVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKI-----VDAQGNDV 1088 F D + ++ LTG+ R+ G +RP +I V G + Sbjct: 923 FKFLKKDKDSKMLSINESHLTGVFVPTTQSVGSRSFLGSLIRPGTEILPKLTVSESGQIL 982 Query: 1089 LIPGTDMPAQYFLP----GKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL 1144 I + + +P KA + G I G L + + T DI G+PR+ L Sbjct: 983 SIRKNTILVRKAVPILFSSKANFHVFHGDFIDKGLPLITLTYKRLTTGDIVQGIPRIEQL 1042 Query: 1145 FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV 1204 FEAR+ + + K + RL Sbjct: 1043 FEARQTTTVL----HEQLHELFETYKTRMRL----------------------------- 1069 Query: 1205 ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 1264 D+ + + R +++ +Q VY+ QGV I+DKH+EVIVRQM Sbjct: 1070 --------------DLAARKSFQKIQRILIDSIQRVYQSQGVTISDKHLEVIVRQMTSTV 1115 Query: 1265 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS 1324 I+ G + L GE ++ N ++ A Y LLGITKASL TESFISAAS Sbjct: 1116 RILEGGRTRLLRGELKSIDWIEKINLGIDIQK---AEYEPILLGITKASLETESFISAAS 1172 Query: 1325 FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGY 1363 FQETTR L+ AA+ G+ D LRGLKENVI+G +PAGTG Sbjct: 1173 FQETTRTLSRAAIEGRTDFLRGLKENVILGHRVPAGTGA 1211 >UniRef50_Q5YF58 DNA-directed RNA polymerase n=6 Tax=Iridoviridae RepID=Q5YF58_ISKNV Length = 1168 Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 198/995 (19%), Positives = 352/995 (35%), Gaps = 178/995 (17%) Query: 16 EFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKY 75 + + + D + + S E+ K K E L+ ++ GP Sbjct: 2 DIGRFVFGMYTADDVLNTSVVEITKAA------LKQEPGALYDPKL-GPFM------LPS 48 Query: 76 KRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTA-H----IWFLKSLPSRIGL---- 126 C C + GHIELA H + FL+ + G Sbjct: 49 DDEPVYDQRCVTC-----DSVTCPGHFGHIELAQDVILHYKECVAFLRVICHSCGAHVPG 103 Query: 127 ------LLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKM 180 L +P + I+ + V+ G + + I+TE+ Sbjct: 104 TRFESALRRLPPQHIQCQVCGLYQPVVRCGSSVTDPAYIVTEDY---------------C 148 Query: 181 GAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT 240 GA + + E R +T + ++ P +I+ Sbjct: 149 GASHVH---------SDVEYARSVFQRVTPQT--------LAIVG---PKLTHPLNLIMK 188 Query: 241 VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ 300 VLP RP + GG DL L ++ RN +L +P+ + + + + Sbjct: 189 RFMVLPSCCRPPNKV-GGSMVHDDLTLLISYIVKRNL---KLAAATSPEQRILYYQAL-K 243 Query: 301 EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360 + +DN + GRA+ ++ + L + + I K G R NL+GKR +Y+ RSV+ Sbjct: 244 GDILCYMDNSK-GRAVHVTSNKSLMGIKECITKKGGLLRHNLMGKRRNYTARSVVGPEST 302 Query: 361 LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAK-KMVEREEAVVWDILDE----- 414 L L Q G+P ++A L K + + K + + V ++ Sbjct: 303 LALDQVGVPPQVADTLTIEEPVTKYNIEHVRQMRATGHLKALYDVDGQVRHVVRCGLTLH 362 Query: 415 --VIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPL 472 + V+LNR PTLHR + ++ G I+++ V +N DFDGD+ +++P Sbjct: 363 RSLRDGDVVVLNRQPTLHRNSMLGMRVKVLPGNTIRVNLAVTHGFNMDFDGDEGNLYLPR 422 Query: 473 TLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKE 532 +L A+ E LM NILS + ++ QD VL LY M+ + + E ++ Sbjct: 423 SLSARAEVATLMSPYTNILSDCSKGVEVLLVQDTVLALYMMSM-WPHTRLEQQFVSMCCM 481 Query: 533 AERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIV 592 A +Y H R+ G+L + T R + IV + Sbjct: 482 AVGVY-------HHRICTA---------GDLFRLMVPEGFTWRR---YGIVFVNGHLADN 522 Query: 593 NQALGKKAISKMLNTCYRIL----GLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPE 648 + + K+A+S N+ R + G K F D + + + S+G+DDMV+P Sbjct: 523 SGPVTKRALSGGYNSIIRTMALHRGQKAAGRFIDCAQFVAREWLSWFPFSMGLDDMVVPG 582 Query: 649 KKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVIN 708 ++ TA Y + + +A D + + T++ Sbjct: 583 ARN----------------------TAEAXYRHHMMLMESARDEIEVVSILESIKNTLMA 620 Query: 709 RDGQEEKQVSFNSIYMMADSGARGSAAQIRQLA---------GMR-------GLMAKPDG 752 + +M +G++G A I Q++ GMR G + P Sbjct: 621 IPLAPT------CMSVMTSAGSKGDAFNIMQISMLLGQQYVDGMRVQREIDYGYRSLPHY 674 Query: 753 SIIE-----------TPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLV 801 +E + ++F +GLN + F R+G+ T+ T +GY RR+V Sbjct: 675 KPVEVHSVEAKYESRGFVRSSFMDGLNPREAFFHAKCGREGMISTSQMTGVTGYAERRMV 734 Query: 802 DVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADIL---- 857 ++DL + D + ++ GG +P+ G + + L Sbjct: 735 KFSEDLRIANDLSVRDANGNIVQLLYGGHGMDPMMCWQDGCPVNFERMAMQIDQSLDICM 794 Query: 858 ------VPRNTLLHEQWCDLLEENSVDAVKVR--SVVSCDTDFGVCAHCYGR-----DLA 904 + E+ + D+V R ++ C+ D Sbjct: 795 MIPMDMAQAAQSVCERLAPIFPPLVRDSVMERHARIIKQGAAQFPCSDADRWAQEVYDAY 854 Query: 905 RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGG 939 + G +G++ AQ+ G TQ T+ FH G Sbjct: 855 VRALCVPGSPVGIVCAQAFGARQTQSTLNIFHKAG 889 Score = 50.9 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 59/150 (39%), Gaps = 25/150 (16%) Query: 1219 DILRLRGVHAVT--RYIVNEVQDVYRLQGVKINDKHIEVIVRQML-RKATIVNAGSSDFL 1275 +L GV V N V DVY +G+ I K R + + Sbjct: 1035 TLLYALGVQGVDVDNTACNNVWDVYEAKGL-IAAK------RFLTHSMVECL-------- 1079 Query: 1276 EGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEA 1335 G+ V + +++ + +G A + IS A+F+E+ +L + Sbjct: 1080 -GDDVHMAHIRVLVDRMTFSGLPTAVDRYTMRSC------ETGPISKATFEESLDILVSS 1132 Query: 1336 AVAGKRDELRGLKENVIVGRLIPAGTGYAY 1365 AV G+RD G+ ++ G+++P GTG Sbjct: 1133 AVRGERDNNTGVGACLVAGKMLPLGTGSCR 1162 >UniRef50_P56764 DNA-directed RNA polymerase subunit beta'' n=192 Tax=Magnoliophyta RepID=RPOC2_ARATH Length = 1376 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 150/478 (31%), Positives = 240/478 (50%), Gaps = 30/478 (6%) Query: 590 SIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEK 649 N+ + AI ++++ G+ T DQ+ GF A + S+GIDD++ Sbjct: 8 VFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGIDDLLTIPS 67 Query: 650 KHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINR 709 K ++ +AE + +++ G V A E+ + I+IW A ++ + + M N + Sbjct: 68 KGWLVQDAEQQSWILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTD---- 123 Query: 710 DGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNV 769 FN ++MM+ SGARG+A+Q+ QL GMRGLM+ P G +I+ PI +N REGL++ Sbjct: 124 --------PFNPVHMMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSL 175 Query: 770 LQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGG 829 +Y IS +GARKG+ DTA++T+++GYLTRRLV+V Q +VV DCGT GI ++P + Sbjct: 176 TEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNKNR 235 Query: 830 DVKE-PLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSC 888 + E ++GRV A+D+ + + RN L + L ++ +R+ +C Sbjct: 236 MMSERIFIQTLIGRVLADDIYI--GSRCVAFRNQDLGIGLVNRLITFGTQSISIRTPFTC 293 Query: 889 DTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAES 948 + +C CYGR G ++ GEA+G+IA QSIGEPGTQLT+RTFH GG + AE Sbjct: 294 RSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAE- 352 Query: 949 SIQVKNKGSIKLSN--VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKG 1006 ++ G IK + V G +L +I E S +P + L Sbjct: 353 HVRAPYNGKIKFNEDLVHPTRTRHGHPAFLCY-IDLSVIIESEDIIHSVTIPPKSFLLVQ 411 Query: 1007 DGEQVAGGETVANWDPHTM----------PVITEVSGFVRF-TDMIDGQTITRQTDEL 1053 + + V + +A T + ++ G + + TD+ T L Sbjct: 412 NDQYVESEQVIAEIREGTYTFHFKERVRKYIYSDSEGEMHWSTDVSHAPEFTYSNVHL 469 Score = 222 bits (566), Expect = 7e-56, Method: Composition-based stats. Identities = 113/426 (26%), Positives = 171/426 (40%), Gaps = 57/426 (13%) Query: 940 AASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPY 999 +++ ++++ S L + N L + + N ++ LI F Y Sbjct: 955 VINQSIKKNTLITIKNSSGPLGTATPISNFYSFLPLLTYN-QISLIKYFQLDNLKY---- 1009 Query: 1000 GAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSL 1059 + K + + + N DP++ V+ F +T + L Sbjct: 1010 --IFQKINSYLIDENGIILNLDPYSNVVLNPFKLNWYFLHQNYHHNYCEETSTIISLGQF 1067 Query: 1060 VVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGD 1119 + P LK Y A V + GD Sbjct: 1068 FCENV-----CIAKKEPHLKSGQVLIVQRDSAVIRSAKPYLATPGAKVHGHYSEILYEGD 1122 Query: 1120 TLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITP 1179 TL E + DIT GLP+V + E R ++ E K KG + + Sbjct: 1123 TLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISLNLE--------KRIKGWNKCITRI 1174 Query: 1180 VDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQD 1239 L + G + G ++ + +VN++Q Sbjct: 1175 ----------------LGIPWGFLI--GAELT--------------IVQSRISLVNKIQK 1202 Query: 1240 VYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLEGEQVEYSRVKIANRELEANGKV 1298 VYR QGV+I+++HIE+IVRQ+ K + G S+ FL GE + R + R LE Sbjct: 1203 VYRSQGVQIHNRHIEIIVRQITSKVLVSEEGMSNVFLPGELIGLLRAERTGRALEE---- 1258 Query: 1299 GATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIP 1358 Y LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV++G +IP Sbjct: 1259 AICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGVIP 1318 Query: 1359 AGTGYA 1364 AGTG+ Sbjct: 1319 AGTGFN 1324 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A4SHV0 DNA-directed RNA polymerase subunit beta' n=23 T... 1482 0.0 UniRef50_Q492C0 DNA-directed RNA polymerase subunit beta' n=74 T... 1458 0.0 UniRef50_A1ALT5 DNA-directed RNA polymerase subunit beta' n=2 Ta... 1408 0.0 UniRef50_A0L5W7 DNA-directed RNA polymerase subunit beta' n=4 Ta... 1406 0.0 UniRef50_Q2N5Q5 DNA-directed RNA polymerase subunit beta' n=126 ... 1375 0.0 UniRef50_B2UQY1 DNA-directed RNA polymerase subunit beta' n=5 Ta... 1339 0.0 UniRef50_Q7URW4 DNA-directed RNA polymerase subunit beta' n=8 Ta... 1324 0.0 UniRef50_C1A6N8 DNA-directed RNA polymerase n=2 Tax=Bacteria Rep... 1317 0.0 UniRef50_UPI00016C3582 DNA-directed RNA polymerase beta chain n=... 1284 0.0 UniRef50_Q2S1Q6 DNA-directed RNA polymerase subunit beta' n=62 T... 1272 0.0 UniRef50_C8PSU9 DNA-directed RNA polymerase n=2 Tax=Spirochaetac... 1271 0.0 UniRef50_Q5GRY9 DNA-directed RNA polymerase subunit beta' n=1189... 1270 0.0 UniRef50_D2QMP3 DNA-directed RNA polymerase, beta' subunit n=4 T... 1267 0.0 UniRef50_B2KEN0 DNA-directed RNA polymerase subunit beta' n=1 Ta... 1267 0.0 UniRef50_Q3KM48 DNA-directed RNA polymerase subunit beta' n=63 T... 1259 0.0 UniRef50_B0SAG0 DNA-directed RNA polymerase subunit beta' n=33 T... 1254 0.0 UniRef50_Q8RHI7 DNA-directed RNA polymerase subunit beta' n=22 T... 1243 0.0 UniRef50_C9RQN4 DNA-directed RNA polymerase n=1 Tax=Fibrobacter ... 1234 0.0 UniRef50_Q3ATP4 DNA-directed RNA polymerase subunit beta' n=12 T... 1234 0.0 UniRef50_B0VGC0 DNA-directed RNA polymerase n=2 Tax=Bacteria Rep... 1186 0.0 UniRef50_A3EVS7 DNA-directed RNA polymerase n=9 Tax=Bacteria Rep... 1179 0.0 UniRef50_B2V7L9 DNA-directed RNA polymerase subunit beta' n=11 T... 1134 0.0 UniRef50_C0QQL7 DNA-directed RNA polymerase n=7 Tax=Bacteria Rep... 1120 0.0 UniRef50_D1BP71 DNA-directed RNA polymerase n=10 Tax=Veillonella... 1118 0.0 UniRef50_B1GZ76 DNA-directed RNA polymerase subunit beta' n=2 Ta... 1108 0.0 UniRef50_A5D5I3 DNA-directed RNA polymerase subunit beta' n=11 T... 1103 0.0 UniRef50_C9RPE5 DNA-directed RNA polymerase n=1 Tax=Fibrobacter ... 1076 0.0 UniRef50_A5N4P0 DNA-directed RNA polymerase subunit beta' n=5 Ta... 1056 0.0 UniRef50_A8Z5T2 DNA-directed RNA polymerase subunit beta' n=30 T... 1049 0.0 UniRef50_A9KJL3 DNA-directed RNA polymerase subunit beta' n=170 ... 1032 0.0 UniRef50_B0S2E5 DNA-directed RNA polymerase subunit beta' n=47 T... 1022 0.0 UniRef50_A8YXJ9 DNA-directed RNA polymerase subunit beta' n=25 T... 1020 0.0 UniRef50_Q04E86 DNA-directed RNA polymerase subunit beta' n=228 ... 1017 0.0 UniRef50_C7GZQ7 DNA-directed RNA polymerase n=2 Tax=Clostridiale... 1007 0.0 UniRef50_UPI0001C379E7 DNA-directed RNA polymerase subunit beta'... 999 0.0 UniRef50_B2UUV9 DNA-directed RNA polymerase subunit beta' n=5926... 978 0.0 UniRef50_A8R9Q5 DNA-directed RNA polymerase n=3 Tax=Bacteria Rep... 955 0.0 UniRef50_A9NEL8 DNA-directed RNA polymerase subunit beta' n=9 Ta... 927 0.0 UniRef50_Q8KTP7 DNA-directed RNA polymerase n=1 Tax=Candidatus T... 921 0.0 UniRef50_Q3ZX00 DNA-directed RNA polymerase subunit beta' n=5 Ta... 918 0.0 UniRef50_UPI00016BFCAD DNA-directed RNA polymerase, beta'''' sub... 909 0.0 UniRef50_C9M941 DNA-directed RNA polymerase n=1 Tax=Jonquetella ... 891 0.0 UniRef50_D1C2J9 DNA-directed RNA polymerase n=1 Tax=Sphaerobacte... 885 0.0 UniRef50_C4ZB95 DNA-directed RNA polymerase n=5 Tax=Firmicutes R... 879 0.0 UniRef50_D1B5Y2 DNA-directed RNA polymerase n=1 Tax=Thermanaerov... 877 0.0 UniRef50_O14802 DNA-directed RNA polymerase III subunit RPC1 n=3... 876 0.0 UniRef50_B9KZZ3 DNA-directed RNA polymerase n=2 Tax=Bacteria Rep... 876 0.0 UniRef50_P35084 DNA-directed RNA polymerase II subunit rpb1 n=10... 858 0.0 UniRef50_Q2ST47 DNA-directed RNA polymerase subunit beta' n=5 Ta... 855 0.0 UniRef50_A5USR6 DNA-directed RNA polymerase subunit beta' n=5 Ta... 854 0.0 UniRef50_B6K857 DNA-directed RNA polymerase n=9 Tax=Eukaryota Re... 846 0.0 UniRef50_B8C4M1 DNA-directed RNA polymerase n=1 Tax=Thalassiosir... 844 0.0 UniRef50_B7Z6H4 DNA-directed RNA polymerase n=21 Tax=Coelomata R... 837 0.0 UniRef50_D1Y777 DNA-directed RNA polymerase n=1 Tax=Pyramidobact... 836 0.0 UniRef50_C5YGY9 DNA-directed RNA polymerase n=716 Tax=Eukaryota ... 835 0.0 UniRef50_C1TLI9 DNA-directed RNA polymerase n=1 Tax=Dethiosulfov... 833 0.0 UniRef50_Q05FH9 DNA-directed RNA polymerase subunit beta' n=17 T... 828 0.0 UniRef50_A4FPP2 DNA-directed RNA polymerase subunit beta' n=54 T... 826 0.0 UniRef50_D2V0G9 Predicted protein n=1 Tax=Naegleria gruberi RepI... 826 0.0 UniRef50_O94666 DNA-directed RNA polymerase III subunit rpc1 n=5... 822 0.0 UniRef50_A8LC63 DNA-directed RNA polymerase subunit beta' n=26 T... 822 0.0 UniRef50_A4S3M0 DNA-directed RNA polymerase n=34 Tax=Eukaryota R... 821 0.0 UniRef50_B0EG66 DNA-directed RNA polymerase n=2 Tax=Entamoeba Re... 811 0.0 UniRef50_A9B6J1 DNA-directed RNA polymerase subunit beta' n=3 Ta... 810 0.0 UniRef50_Q7X881 DNA-directed RNA polymerase n=6 Tax=Magnoliophyt... 810 0.0 UniRef50_UPI00017927B1 PREDICTED: similar to AGAP004703-PA n=1 T... 809 0.0 UniRef50_Q0U9K8 DNA-directed RNA polymerase n=242 Tax=root RepID... 808 0.0 UniRef50_UPI0001C30E3D DNA-directed RNA polymerase, beta'''' sub... 808 0.0 UniRef50_P47582 DNA-directed RNA polymerase subunit beta' n=6 Ta... 808 0.0 UniRef50_C5SEJ2 DNA-directed RNA polymerase n=6 Tax=Proteobacter... 807 0.0 UniRef50_Q1AU23 DNA-directed RNA polymerase subunit beta' n=11 T... 805 0.0 UniRef50_B9GIK9 DNA-directed RNA polymerase n=2 Tax=Magnoliophyt... 801 0.0 UniRef50_P04050 DNA-directed RNA polymerase II subunit RPB1 n=21... 800 0.0 UniRef50_A8IRZ2 DNA-directed RNA polymerase n=3 Tax=Eukaryota Re... 799 0.0 UniRef50_B3DTE1 DNA-directed RNA polymerase subunit beta' n=50 T... 799 0.0 UniRef50_D1HEN1 DNA-directed RNA polymerase (Fragment) n=1 Tax=V... 797 0.0 UniRef50_C6UN03 DNA-directed RNA polymerase n=1 Tax=Candidatus H... 797 0.0 UniRef50_A7HNY1 DNA-directed RNA polymerase subunit beta' n=5 Ta... 797 0.0 UniRef50_B0WFY1 DNA-directed RNA polymerase n=5 Tax=Diptera RepI... 797 0.0 UniRef50_D2VMG0 RNA polymerase II largest subunit n=1 Tax=Naegle... 796 0.0 UniRef50_O21238 DNA-directed RNA polymerase n=3 Tax=Eukaryota Re... 795 0.0 UniRef50_B7G2E6 DNA-directed RNA polymerase n=1 Tax=Phaeodactylu... 794 0.0 UniRef50_C8W807 DNA-directed RNA polymerase n=6 Tax=Actinobacter... 794 0.0 UniRef50_Q9LVH0 DNA-directed RNA polymerase n=7 Tax=Eukaryota Re... 793 0.0 UniRef50_P24928 DNA-directed RNA polymerase II subunit RPB1 n=93... 790 0.0 UniRef50_P04052 DNA-directed RNA polymerase II subunit RPB1 n=13... 790 0.0 UniRef50_C5CGD8 DNA-directed RNA polymerase n=1 Tax=Kosmotoga ol... 787 0.0 UniRef50_D2VNK8 RNA polymerase II n=2 Tax=Naegleria gruberi RepI... 785 0.0 UniRef50_Q6CB20 DNA-directed RNA polymerase n=1 Tax=Yarrowia lip... 784 0.0 UniRef50_O96452 DNA-directed RNA polymerase n=3 Tax=Eukaryota Re... 783 0.0 UniRef50_A4E9H2 DNA-directed RNA polymerase n=1 Tax=Collinsella ... 780 0.0 UniRef50_Q8SSC4 DNA-directed RNA polymerase II subunit RPB1 n=17... 778 0.0 UniRef50_B6KEC6 DNA-directed RNA polymerase n=5 Tax=Eukaryota Re... 775 0.0 UniRef50_P04051 DNA-directed RNA polymerase III subunit RPC1 n=1... 773 0.0 UniRef50_C5DJG5 DNA-directed RNA polymerase n=3 Tax=Saccharomyce... 771 0.0 UniRef50_B6AG69 DNA-directed RNA polymerase n=1 Tax=Cryptosporid... 768 0.0 UniRef50_C4LL70 DNA-directed RNA polymerase subunit beta' n=65 T... 768 0.0 UniRef50_A2DEX5 DNA-directed RNA polymerase n=1 Tax=Trichomonas ... 767 0.0 UniRef50_Q9AXN0 DNA-directed RNA polymerase n=4 Tax=Rhodophyta R... 765 0.0 UniRef50_Q2W2I2 DNA-directed RNA polymerase subunit beta' n=10 T... 762 0.0 UniRef50_C4VAM1 DNA-directed RNA polymerase n=1 Tax=Nosema ceran... 762 0.0 UniRef50_B1L934 DNA-directed RNA polymerase subunit beta' n=8 Ta... 760 0.0 UniRef50_Q5CUJ2 DNA-directed RNA polymerase (Fragment) n=6 Tax=E... 757 0.0 UniRef50_A9VCM2 DNA-directed RNA polymerase n=3 Tax=Fungi/Metazo... 755 0.0 UniRef50_A9BF32 DNA-directed RNA polymerase subunit beta' n=1 Ta... 750 0.0 UniRef50_Q1J0P7 DNA-directed RNA polymerase subunit beta' n=11 T... 750 0.0 UniRef50_B8BQ02 DNA-directed RNA polymerase n=1 Tax=Thalassiosir... 744 0.0 UniRef50_D0NAG7 DNA-directed RNA polymerase n=1 Tax=Phytophthora... 744 0.0 UniRef50_A9CTJ8 DNA-directed RNA polymerase n=1 Tax=Enterocytozo... 742 0.0 UniRef50_A8N128 DNA-directed RNA polymerase n=59 Tax=Dikarya Rep... 742 0.0 UniRef50_B2ADZ3 DNA-directed RNA polymerase n=4 Tax=Dikarya RepI... 740 0.0 UniRef50_Q84KP6 DNA-directed RNA polymerase n=6 Tax=Eukaryota Re... 732 0.0 UniRef50_Q9BMP2 DNA-directed RNA polymerase (Fragment) n=1 Tax=S... 731 0.0 UniRef50_C5LSN9 DNA-directed RNA polymerase n=7 Tax=Perkinsus ma... 720 0.0 UniRef50_C5KZ53 DNA-directed RNA polymerase n=4 Tax=Perkinsus ma... 720 0.0 UniRef50_Q8SRM3 DNA-directed RNA polymerase n=2 Tax=Apansporobla... 716 0.0 UniRef50_Q3SE62 DNA-directed RNA polymerase n=3 Tax=Paramecium t... 715 0.0 UniRef50_C4QF52 DNA-directed RNA polymerase n=2 Tax=Schistosoma ... 713 0.0 UniRef50_Q4SF83 DNA-directed RNA polymerase (Fragment) n=1 Tax=T... 705 0.0 UniRef50_B5Y993 DNA-directed RNA polymerase n=1 Tax=Coprothermob... 702 0.0 UniRef50_P17545 DNA-directed RNA polymerase II subunit RPB1-B n=... 701 0.0 UniRef50_C4XEN7 DNA-directed RNA polymerase n=2 Tax=Mycoplasma R... 700 0.0 UniRef50_C7P941 DNA-directed RNA polymerase n=26 Tax=root RepID=... 696 0.0 UniRef50_Q8SS15 DNA-directed RNA polymerase n=2 Tax=Apansporobla... 696 0.0 UniRef50_Q27095 DNA-directed RNA polymerase n=2 Tax=Trichomonas ... 695 0.0 UniRef50_P11512 DNA-directed RNA polymerase subunit A' n=23 Tax=... 694 0.0 UniRef50_Q6C1S4 DNA-directed RNA polymerase n=2 Tax=Saccharomyce... 692 0.0 UniRef50_O27125 DNA-directed RNA polymerase subunit A' n=5 Tax=A... 691 0.0 UniRef50_C4M5C2 DNA-directed RNA polymerase n=4 Tax=Entamoeba Re... 691 0.0 UniRef50_P41556 DNA-directed RNA polymerase subunit A' n=22 Tax=... 689 0.0 UniRef50_C6HPI8 DNA-directed RNA polymerase n=1 Tax=Ajellomyces ... 687 0.0 UniRef50_D1H4X6 DNA-directed RNA polymerase (Fragment) n=1 Tax=V... 687 0.0 UniRef50_B9PZ91 DNA-directed RNA polymerase n=3 Tax=Toxoplasma g... 682 0.0 UniRef50_A5DCV3 DNA-directed RNA polymerase II subunit RPB1 (Fra... 681 0.0 UniRef50_Q9AVW8 DNA-directed RNA polymerase n=2 Tax=Cryptophyta ... 669 0.0 UniRef50_UPI0001C41F18 DNA-directed RNA polymerase subunit A'' R... 666 0.0 UniRef50_UPI000179161A PREDICTED: similar to DNA-directed RNA po... 666 0.0 UniRef50_B1AIH6 DNA-directed RNA polymerase subunit beta' n=15 T... 661 0.0 UniRef50_B3RW43 DNA-directed RNA polymerase n=1 Tax=Trichoplax a... 658 0.0 UniRef50_P15398 DNA-directed RNA polymerase I subunit rpa1 n=2 T... 658 0.0 UniRef50_Q4U940 DNA-directed RNA polymerase n=2 Tax=Theileria Re... 658 0.0 UniRef50_Q9HM79 DNA-directed RNA polymerase subunit A' n=16 Tax=... 650 0.0 UniRef50_A7AP17 DNA-directed RNA polymerase n=1 Tax=Babesia bovi... 649 0.0 UniRef50_Q3M5C9 DNA-directed RNA polymerase subunit gamma n=11 T... 649 0.0 UniRef50_D0EVW4 DNA-directed RNA polymerase n=1 Tax=Bryopsis hyp... 647 0.0 UniRef50_A9UY22 DNA-directed RNA polymerase (Fragment) n=1 Tax=M... 646 0.0 UniRef50_Q9SVY0 DNA-directed RNA polymerase n=2 Tax=rosids RepID... 646 0.0 UniRef50_B1L739 DNA-directed RNA polymerase n=1 Tax=Candidatus K... 640 0.0 UniRef50_Q5CWY0 DNA-directed RNA polymerase n=3 Tax=Cryptosporid... 639 0.0 UniRef50_Q110H2 DNA-directed RNA polymerase subunit gamma n=543 ... 638 0.0 UniRef50_A8QBY2 DNA-directed RNA polymerase n=1 Tax=Malassezia g... 638 0.0 UniRef50_P09846 DNA-directed RNA polymerase subunit A' n=4 Tax=M... 637 0.0 UniRef50_O77165 DNA-directed RNA polymerase (Fragment) n=3 Tax=c... 636 e-180 UniRef50_Q86H36 DNA-directed RNA polymerase I subunit rpa1 n=1 T... 631 e-179 UniRef50_P10964 DNA-directed RNA polymerase I subunit RPA1 n=24 ... 627 e-178 UniRef50_D1I9R9 DNA-directed RNA polymerase (Fragment) n=2 Tax=V... 624 e-177 UniRef50_A7BVC2 DNA-directed RNA polymerase n=1 Tax=Beggiatoa sp... 622 e-176 UniRef50_A5K7T9 DNA-directed RNA polymerase n=1 Tax=Plasmodium v... 622 e-176 UniRef50_Q5KIF6 DNA-directed RNA polymerase n=5 Tax=Dikarya RepI... 621 e-176 UniRef50_Q7T6X5 DNA-directed RNA polymerase subunit 1 n=1 Tax=Ac... 621 e-176 UniRef50_Q2GP10 DNA-directed RNA polymerase n=1 Tax=Chaetomium g... 620 e-176 UniRef50_D2A5Z9 DNA-directed RNA polymerase n=1 Tax=Tribolium ca... 620 e-175 UniRef50_B6AIF4 DNA-directed RNA polymerase n=1 Tax=Cryptosporid... 619 e-175 UniRef50_B0CXW7 DNA-directed RNA polymerase n=1 Tax=Laccaria bic... 618 e-175 UniRef50_Q0D0E1 DNA-directed RNA polymerase n=23 Tax=Leotiomycet... 614 e-174 UniRef50_Q8TXI8 DNA-directed RNA polymerase n=1 Tax=Methanopyrus... 610 e-172 UniRef50_Q0U0A2 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeri... 609 e-172 UniRef50_Q74M69 DNA-directed RNA polymerase n=1 Tax=Nanoarchaeum... 606 e-171 UniRef50_UPI00006CF1E9 RNA polymerase Rpb1, domain 2 family prot... 606 e-171 UniRef50_C7DHC4 DNA-directed RNA polymerase n=1 Tax=Candidatus M... 604 e-170 UniRef50_Q3SE61 DNA-directed RNA polymerase n=2 Tax=Paramecium t... 602 e-170 UniRef50_Q98RN1 DNA-directed RNA polymerase n=1 Tax=Guillardia t... 602 e-170 UniRef50_Q9BHM4 DNA-directed RNA polymerase (Fragment) n=1 Tax=P... 601 e-170 UniRef50_C4M3E6 DNA-directed RNA polymerase n=2 Tax=Entamoeba Re... 599 e-169 UniRef50_Q9BHZ7 DNA-directed RNA polymerase (Fragment) n=1 Tax=L... 598 e-169 UniRef50_A1YIC5 DNA-directed RNA polymerase (Fragment) n=1 Tax=C... 596 e-168 UniRef50_B7S4C1 DNA-directed RNA polymerase n=2 Tax=Bacillarioph... 596 e-168 UniRef50_Q4A369 DNA-directed RNA polymerase n=2 Tax=dsDNA viruse... 591 e-167 UniRef50_P08968 DNA-directed RNA polymerase III subunit RPC1 n=8... 584 e-165 UniRef50_A7J587 DNA-directed RNA polymerase (Fragment) n=10 Tax=... 581 e-164 UniRef50_C1EFA8 DNA-directed RNA polymerase (Fragment) n=2 Tax=M... 575 e-162 UniRef50_O95602 DNA-directed RNA polymerase I subunit RPA1 n=40 ... 571 e-161 UniRef50_A9CTM9 DNA-directed RNA polymerase n=1 Tax=Enterocytozo... 571 e-160 UniRef50_B9ZVN9 DNA-directed RNA polymerase n=24 Tax=Eumetazoa R... 570 e-160 UniRef50_Q9MUS6 DNA-directed RNA polymerase subunit beta' n=2 Ta... 569 e-160 UniRef50_Q8LLJ6 DNA-directed RNA polymerase (Fragment) n=1 Tax=O... 564 e-159 UniRef50_A8Q5K0 DNA-directed RNA polymerase n=2 Tax=Eukaryota Re... 564 e-159 UniRef50_Q4PB85 DNA-directed RNA polymerase n=3 Tax=Basidiomycot... 561 e-158 UniRef50_A9BK83 DNA-directed RNA polymerase n=1 Tax=Cryptophyta ... 559 e-157 UniRef50_Q6E6G2 DNA-directed RNA polymerase (Fragment) n=1 Tax=A... 558 e-157 UniRef50_B3S2I6 DNA-directed RNA polymerase n=1 Tax=Trichoplax a... 556 e-156 UniRef50_P91875 DNA-directed RNA polymerase I subunit RPA1 n=11 ... 556 e-156 UniRef50_A5BD07 DNA-directed RNA polymerase n=1 Tax=Vitis vinife... 556 e-156 UniRef50_A4SAV6 DNA-directed RNA polymerase n=2 Tax=Ostreococcus... 553 e-155 UniRef50_B7P2L8 DNA-directed RNA polymerase (Fragment) n=1 Tax=I... 552 e-155 UniRef50_UPI0000E46841 PREDICTED: similar to RNA polymerase I la... 551 e-155 UniRef50_Q3LWE3 DNA-directed RNA polymerase n=1 Tax=Bigelowiella... 550 e-154 UniRef50_Q9TL05 DNA-directed RNA polymerase subunit beta' n=1 Ta... 549 e-154 UniRef50_B2VT60 DNA-directed RNA polymerase n=7 Tax=Leotiomyceta... 541 e-152 UniRef50_A0DJB3 DNA-directed RNA polymerase n=1 Tax=Paramecium t... 538 e-151 UniRef50_D0MYP8 DNA-directed RNA polymerase n=1 Tax=Phytophthora... 534 e-149 UniRef50_B0XG16 DNA-directed RNA polymerase n=3 Tax=Diptera RepI... 532 e-149 UniRef50_A8J568 DNA-directed RNA polymerase (Fragment) n=1 Tax=C... 527 e-148 UniRef50_UPI0001926746 PREDICTED: similar to polymerase (RNA) I ... 527 e-147 UniRef50_D2VD58 DNA-directed RNA polymerase subunit A n=1 Tax=Na... 526 e-147 UniRef50_B8M0T3 DNA-directed RNA polymerase n=3 Tax=Eurotiomycet... 525 e-147 UniRef50_B3PM77 DNA-directed RNA polymerase subunit beta' n=2 Ta... 520 e-145 UniRef50_Q1ACN5 DNA-directed RNA polymerase subunit beta' n=2 Ta... 517 e-144 UniRef50_C4Q0S7 DNA-directed RNA polymerase n=1 Tax=Schistosoma ... 515 e-144 UniRef50_P56763 DNA-directed RNA polymerase subunit beta' n=180 ... 512 e-143 UniRef50_C3ZBW5 DNA-directed RNA polymerase n=1 Tax=Branchiostom... 510 e-142 UniRef50_Q0P3M5 DNA-directed RNA polymerase subunit beta' n=1 Ta... 507 e-141 UniRef50_A4GYP9 DNA-directed RNA polymerase subunit beta' n=15 T... 505 e-141 UniRef50_B7XHV6 DNA-directed RNA polymerase n=2 Tax=Enterocytozo... 500 e-139 UniRef50_A6R8S3 DNA-directed RNA polymerase n=1 Tax=Ajellomyces ... 497 e-138 UniRef50_Q4A5S8 DNA-directed RNA polymerase subunit beta' n=3 Ta... 497 e-138 UniRef50_Q5YF58 DNA-directed RNA polymerase n=6 Tax=Iridoviridae... 497 e-138 UniRef50_Q32RG1 DNA-directed RNA polymerase subunit beta' n=2 Ta... 496 e-138 UniRef50_UPI000180C7E3 PREDICTED: similar to RNA polymerase I la... 495 e-138 UniRef50_B7T2U0 DNA-directed RNA polymerase n=68 Tax=Magnoliophy... 495 e-138 UniRef50_UPI000186D8C3 DNA-directed RNA polymerase I largest sub... 491 e-137 UniRef50_P25202 DNA-directed RNA polymerase III subunit RPC1 n=3... 486 e-135 UniRef50_Q4A7B0 DNA-directed RNA polymerase subunit beta' n=5 Ta... 482 e-134 UniRef50_A9BKN5 DNA-directed RNA polymerase n=1 Tax=Cryptophyta ... 482 e-134 UniRef50_O17628 DNA-directed RNA polymerase n=3 Tax=Caenorhabdit... 480 e-133 UniRef50_C7BEK7 DNA-directed RNA polymerase n=2 Tax=Chlorophyta ... 478 e-133 UniRef50_A2GJD3 DNA-directed RNA polymerase (Fragment) n=3 Tax=T... 476 e-132 UniRef50_C5LXY1 DNA-directed RNA polymerase n=6 Tax=Perkinsus ma... 474 e-131 UniRef50_Q83066 DNA-directed RNA polymerase n=3 Tax=Lymphocystiv... 472 e-131 UniRef50_A8XYH3 DNA-directed RNA polymerase n=1 Tax=Caenorhabdit... 472 e-131 UniRef50_P23581 DNA-directed RNA polymerase subunit beta'' n=2 T... 470 e-130 UniRef50_P14248 DNA-directed RNA polymerase II subunit RPB1 n=48... 460 e-127 UniRef50_B3L428 DNA-directed RNA polymerase n=27 Tax=Eukaryota R... 458 e-127 UniRef50_Q06VN9 DNA-directed RNA polymerase n=1 Tax=Trichoplusia... 453 e-125 UniRef50_B9F2S6 DNA-directed RNA polymerase n=3 Tax=Poaceae RepI... 443 e-122 UniRef50_P16355 DNA-directed RNA polymerase I subunit RPA1 n=4 T... 434 e-119 UniRef50_P22705 DNA-directed RNA polymerase subunit beta' n=8 Ta... 433 e-119 UniRef50_Q9AW39 DNA-directed RNA polymerase n=1 Tax=Guillardia t... 426 e-117 UniRef50_P23580 DNA-directed RNA polymerase subunit beta' n=2 Ta... 426 e-117 UniRef50_Q4D133 DNA-directed RNA polymerase n=4 Tax=Trypanosoma ... 422 e-116 UniRef50_Q196X0 Probable DNA-directed RNA polymerase II subunit ... 419 e-115 UniRef50_Q110H3 DNA-directed RNA polymerase subunit beta' n=5 Ta... 419 e-115 UniRef50_P49467 DNA-directed RNA polymerase subunit beta' n=4 Ta... 416 e-114 UniRef50_B5VU95 DNA-directed RNA polymerase n=3 Tax=Cyanobacteri... 415 e-114 UniRef50_Q9MUS7 DNA-directed RNA polymerase subunit beta'' n=2 T... 413 e-113 UniRef50_A9SIX8 DNA-directed RNA polymerase n=1 Tax=Physcomitrel... 409 e-112 UniRef50_D1J3G9 DNA-directed RNA polymerase (Fragment) n=2 Tax=V... 408 e-111 UniRef50_Q9BHJ4 DNA-directed RNA polymerase (Fragment) n=2 Tax=T... 404 e-110 UniRef50_Q58445 Mja rpoA1 intein n=2 Tax=Methanocaldococcus RepI... 403 e-110 UniRef50_O78483 DNA-directed RNA polymerase subunit beta'' n=2 T... 403 e-110 Sequences not found previously or not previously below threshold: >UniRef50_A4SHV0 DNA-directed RNA polymerase subunit beta' n=23 Tax=Proteobacteria RepID=RPOC_AERS4 Length = 1434 Score = 1482 bits (3835), Expect = 0.0, Method: Composition-based stats. Identities = 1167/1435 (81%), Positives = 1276/1435 (88%), Gaps = 29/1435 (2%) Query: 1 MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60 MKDLLKFLKAQTKTEEFD+IKI LASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR Sbjct: 1 MKDLLKFLKAQTKTEEFDSIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60 Query: 61 IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120 IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL Sbjct: 61 IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120 Query: 121 PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKM 180 PSRIGLLLDM LRDIERVLYFESYVVIE GMTNLER Q+L+EE YLDALEE+GDEFDAKM Sbjct: 121 PSRIGLLLDMTLRDIERVLYFESYVVIEPGMTNLERSQMLSEENYLDALEEWGDEFDAKM 180 Query: 181 GAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT 240 GAEAI ALL+++DLE E + +REEL++TNSETKRKK TKR+KL+EAF+QSGNKPEWMI+T Sbjct: 181 GAEAILALLRAIDLEGEVKTMREELDQTNSETKRKKTTKRLKLMEAFLQSGNKPEWMIMT 240 Query: 241 VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ 300 VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ Sbjct: 241 VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ 300 Query: 301 EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360 E+VDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP Sbjct: 301 ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT 360 Query: 361 LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP 420 LRLHQCGLPKKMALELFKPFIYGKLE RGLATTIKAAKKMVEREEAVVWDILDEVIREHP Sbjct: 361 LRLHQCGLPKKMALELFKPFIYGKLESRGLATTIKAAKKMVEREEAVVWDILDEVIREHP 420 Query: 421 VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480 VLLNRAPTLHRLGIQAFEP LIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA Sbjct: 421 VLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480 Query: 481 RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSG 540 RALMMSTNNILSPA+GEPIIVPSQDVVLGLYYMTR +NAKGEGMVL GPKEAE++YR+G Sbjct: 481 RALMMSTNNILSPASGEPIIVPSQDVVLGLYYMTRARINAKGEGMVLAGPKEAEKVYRAG 540 Query: 541 LASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIV-------- 592 LA LHARVKVRITEY + A+ LV +T LK+TTVGRAIL +I+PKG+ Y+++ Sbjct: 541 LADLHARVKVRITEYLRQADDSLVERTELKNTTVGRAILSLILPKGMEYALIDEPKVLTA 600 Query: 593 ------------------NQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAAR 634 N+ALGKK IS++LNTCYR GLK TVIFADQ+MYTGF YAA Sbjct: 601 AEQADLDANPQNWIKSVSNKALGKKLISRLLNTCYRKQGLKDTVIFADQLMYTGFHYAAL 660 Query: 635 SGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVS 694 SGASVGIDDMVIP+ K +II+ AEAEVAEIQ+QF SGLVTAGERYNKVIDIWA+AN+RVS Sbjct: 661 SGASVGIDDMVIPDAKKDIIAAAEAEVAEIQDQFLSGLVTAGERYNKVIDIWASANERVS 720 Query: 695 KAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSI 754 KAMM+NL E +N G+EE+Q SFNSI+MMADSGARGSAAQIRQLAGMRGLMAKPDGSI Sbjct: 721 KAMMENLSKERDVNSLGEEEEQASFNSIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSI 780 Query: 755 IETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDC 814 IETPI ANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQD+V+TEDDC Sbjct: 781 IETPIVANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDMVITEDDC 840 Query: 815 GTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADIL-VPRNTLLHEQWCDLLE 873 GT EG+ MTP+IEGGDV EPLR+RVLGRV A+DV+KPGT D + V RNTLL EQ CDLLE Sbjct: 841 GTVEGLWMTPLIEGGDVVEPLRERVLGRVVADDVIKPGTEDEILVARNTLLDEQLCDLLE 900 Query: 874 ENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMR 933 NSVD VKVRS ++C+TDFG CAHCYGRDLARGH++NKGEA+GVIAAQSIGEPGTQLTMR Sbjct: 901 RNSVDRVKVRSAITCETDFGNCAHCYGRDLARGHLVNKGEAVGVIAAQSIGEPGTQLTMR 960 Query: 934 TFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKE 993 TFHIGGAASRAAAESSIQVKN GSIKL N K V NS KLVITSR+TEL ++D+ GRTKE Sbjct: 961 TFHIGGAASRAAAESSIQVKNTGSIKLQNAKFVHNSDDKLVITSRSTELTIMDDMGRTKE 1020 Query: 994 SYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDEL 1053 S+K+PYG+VL DG+ V+ G+TVANWDPHT P+ITEV+G ++F MIDG TITRQTDEL Sbjct: 1021 SHKLPYGSVLEVKDGQAVSAGDTVANWDPHTHPIITEVAGRLQFEHMIDGVTITRQTDEL 1080 Query: 1054 TGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGV 1113 TGLSS+VVLD ER + GK++RP +K+VD G DV+IPGTD+ AQYFLPGKAIV LEDG Sbjct: 1081 TGLSSIVVLDVNERPSAGKEMRPTVKLVDQNGKDVMIPGTDVAAQYFLPGKAIVNLEDGA 1140 Query: 1114 QISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKR 1173 + GD +ARIPQES GTKDITGGLPRVADLFEAR+PKEPAILAEISG +SFGKETKGKR Sbjct: 1141 NVGVGDAVARIPQESSGTKDITGGLPRVADLFEARQPKEPAILAEISGTISFGKETKGKR 1200 Query: 1174 RLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYI 1233 RLVITP DG D YEEMIPKWR LNVFEGE+VE+G+V++DGPE+ HDILRLRG+ V YI Sbjct: 1201 RLVITPTDGGDVYEEMIPKWRNLNVFEGEKVEKGEVLADGPESAHDILRLRGISPVANYI 1260 Query: 1234 VNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELE 1293 NEVQDVYRLQGVKINDKHIEVIVRQMLRK I++AG +D +EGEQVE +RVKIANR+L Sbjct: 1261 ANEVQDVYRLQGVKINDKHIEVIVRQMLRKCEILSAGDTDLIEGEQVEVARVKIANRKLV 1320 Query: 1294 ANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIV 1353 A GK AT+ L+GITKASL+TESFISAASFQETTRVLTEAAV GKRDELRGLKENVIV Sbjct: 1321 AEGKTPATFRHILMGITKASLSTESFISAASFQETTRVLTEAAVGGKRDELRGLKENVIV 1380 Query: 1354 GRLIPAGTGYAYHQDRMRR-RAAGEAPAAPQVTAEDASASLAELLNAGLGGSDNE 1407 GRLIPAGTG+AYH R+ + AA A PQVTA++A +LA+LLNA G D E Sbjct: 1381 GRLIPAGTGFAYHHARINQRAAAARAVGVPQVTADEAQQNLADLLNAS-GSFDEE 1434 >UniRef50_Q492C0 DNA-directed RNA polymerase subunit beta' n=74 Tax=Bacteria RepID=RPOC_BLOPB Length = 1416 Score = 1458 bits (3773), Expect = 0.0, Method: Composition-based stats. Identities = 1160/1413 (82%), Positives = 1282/1413 (90%), Gaps = 13/1413 (0%) Query: 1 MKDLLKFLKAQ-TKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCA 59 MKDLL+F K Q T+ EEF+AIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCA Sbjct: 1 MKDLLRFFKIQHTQIEEFNAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCA 60 Query: 60 RIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKS 119 RIFGP+KDYECLCGKYKRLKHRGV+CEKCGVEVTQ+KVRRERMGHIELASPTAHIWFLKS Sbjct: 61 RIFGPIKDYECLCGKYKRLKHRGVVCEKCGVEVTQSKVRRERMGHIELASPTAHIWFLKS 120 Query: 120 LPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAK 179 LPSRIGLLLDMPLRDIERVLYFESYVV+E GMT+LE +Q+LTEE+YLDALEEFGDEF+AK Sbjct: 121 LPSRIGLLLDMPLRDIERVLYFESYVVVESGMTSLECRQVLTEEEYLDALEEFGDEFEAK 180 Query: 180 MGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMIL 239 MGAEAIQ LL++ +L+ ECE LRE L +++SETKRKK+TKRIKL+EAF+ S NKPEWM+L Sbjct: 181 MGAEAIQILLRNTNLKNECEYLREILEDSHSETKRKKITKRIKLIEAFIYSENKPEWMVL 240 Query: 240 TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRML 299 VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAP+IIVRNEKRML Sbjct: 241 NVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPEIIVRNEKRML 300 Query: 300 QEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP 359 QEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP Sbjct: 301 QEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP 360 Query: 360 YLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREH 419 YL+LHQCGLPKKMALELFKPFIYGKLEL+G A+TIKAAKKMV+REEAVVWDILD VIREH Sbjct: 361 YLKLHQCGLPKKMALELFKPFIYGKLELQGFASTIKAAKKMVDREEAVVWDILDNVIREH 420 Query: 420 PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLE 479 PV+LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLE Sbjct: 421 PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLE 480 Query: 480 ARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRS 539 ARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTR+ NAKGEGMVLTGPKEAE LYR Sbjct: 481 ARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRERSNAKGEGMVLTGPKEAECLYRL 540 Query: 540 GLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKK 599 GLA LHAR+K+RITEYE D NGE KT+L ++T+GR+ILWMIVPKGLP+ +VNQ LGKK Sbjct: 541 GLADLHARIKIRITEYEYDKNGEWSKKTNLVNSTIGRSILWMIVPKGLPFILVNQVLGKK 600 Query: 600 AISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEA 659 AIS MLN CYR+LG+K TVI ADQIMYTGFAYAARSGASVGIDDM+IP KK +II EAE+ Sbjct: 601 AISTMLNNCYRLLGMKATVILADQIMYTGFAYAARSGASVGIDDMMIPSKKADIIDEAES 660 Query: 660 EVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSF 719 EV EIQEQFQ+GLVTAGERYNKVIDIWAAAN+RV++AMMDNL TETV+NR+GQ E Q SF Sbjct: 661 EVVEIQEQFQTGLVTAGERYNKVIDIWAAANERVAQAMMDNLATETVMNRNGQLENQASF 720 Query: 720 NSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA 779 N+I+MMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA Sbjct: 721 NNIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA 780 Query: 780 RKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRV 839 RKGLADTALKTANSGYLTRRLVDVAQDLV+T+DDC T GI+M+PVIEGGDVKEPLR+RV Sbjct: 781 RKGLADTALKTANSGYLTRRLVDVAQDLVITQDDCDTFSGIVMSPVIEGGDVKEPLRERV 840 Query: 840 LGRVTAED---VLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCA 896 LGRV AED + +L+ RNTLL E WCD+L+E+S+D VKVRSVV+CDTDFGVC+ Sbjct: 841 LGRVLAEDILESNADTDSKVLIVRNTLLDEYWCDVLDEHSIDTVKVRSVVTCDTDFGVCS 900 Query: 897 HCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKG 956 CYGRDLARG I+NKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASR+A ESSIQ+KN G Sbjct: 901 KCYGRDLARGQIVNKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRSALESSIQIKNTG 960 Query: 957 SIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGET 1016 ++ L N+KSV+N GKLV+ SRNTELK+ID+F RTKESYKVPYGAV+ K + E+V GE Sbjct: 961 TVCLKNIKSVINGEGKLVVISRNTELKIIDQFSRTKESYKVPYGAVITKKNEEKVIHGEI 1020 Query: 1017 VANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRP 1076 VA WDPHTMPVI EVSGF++F D+IDGQ+I +QTDELTGL+S+VVLD++ER + KDLRP Sbjct: 1021 VAYWDPHTMPVIAEVSGFIQFIDLIDGQSIVKQTDELTGLTSIVVLDTSERVSSAKDLRP 1080 Query: 1077 ALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITG 1136 LKIVD G D+ IPGTD+P QYFLPG+++VQL DG +I GD LAR+P ES GTKDITG Sbjct: 1081 TLKIVDINGYDIFIPGTDVPVQYFLPGRSVVQLVDGSRIICGDILARLPHESSGTKDITG 1140 Query: 1137 GLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQL 1196 GLPRVADLFEARRPKE AILAEISG +SFGKETKGKRRL+I+P++ D YEEMIPKWR L Sbjct: 1141 GLPRVADLFEARRPKESAILAEISGTISFGKETKGKRRLMISPIEDGDVYEEMIPKWRHL 1200 Query: 1197 NVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVI 1256 NVFEGE V+RGD+ISDGPE+PHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVI Sbjct: 1201 NVFEGEYVDRGDIISDGPESPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVI 1260 Query: 1257 VRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLAT 1316 VRQMLRKAT++ +GSSDFL GEQVEYSR+KIANR+LE GKV ++ R+LLGITKASLAT Sbjct: 1261 VRQMLRKATVIRSGSSDFLVGEQVEYSRIKIANRKLENEGKVKISFIRNLLGITKASLAT 1320 Query: 1317 ESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAG 1376 ESFISAASFQETTRVLTE++VAGKRDELRGLKENVIVGRLIPAGTGY+YHQ+R+ R Sbjct: 1321 ESFISAASFQETTRVLTESSVAGKRDELRGLKENVIVGRLIPAGTGYSYHQERVHHRHFS 1380 Query: 1377 EAPA---------APQVTAEDASASLAELLNAG 1400 + Q+TA++ASA+L ELLNA Sbjct: 1381 NKKETEKSVITNISSQITADEASANLTELLNAT 1413 >UniRef50_A1ALT5 DNA-directed RNA polymerase subunit beta' n=2 Tax=Bacteria RepID=RPOC_PELPD Length = 1409 Score = 1408 bits (3643), Expect = 0.0, Method: Composition-based stats. Identities = 843/1416 (59%), Positives = 1057/1416 (74%), Gaps = 39/1416 (2%) Query: 1 MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60 M+D F F AI+I+++SP+ IR S GEVKKPETINYRTFKPERDGLFCA+ Sbjct: 1 MEDYFSFFDKPKDPLHFSAIRISVSSPEKIRERSHGEVKKPETINYRTFKPERDGLFCAK 60 Query: 61 IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120 IFGP KDYEC CGKYKR+KHRG+ICEKCGVEV +KVRRER+GHI+LA+P AHIWFLKSL Sbjct: 61 IFGPTKDYECNCGKYKRMKHRGIICEKCGVEVIPSKVRRERLGHIDLATPVAHIWFLKSL 120 Query: 121 PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFG-DEFDAK 179 PSRIG LLD+ L+D+E+VLYFE++V+ + + L+ ++++E+++L A +E+G D F Sbjct: 121 PSRIGNLLDITLKDLEKVLYFEAFVISDPKNSPLQFCEVMSEDKFLKAQQEYGYDAFSGG 180 Query: 180 MGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMIL 239 MGAEAI+ LK++DL++ QLR E+ E+ SE KRKK KR+K+LEAF SGNKPEWMIL Sbjct: 181 MGAEAIRECLKAIDLDELSGQLRTEMMESTSEAKRKKTAKRLKVLEAFKSSGNKPEWMIL 240 Query: 240 TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRML 299 +PVLPP+LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL++L AP++I+RNEKRML Sbjct: 241 ECIPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLVELQAPEVIIRNEKRML 300 Query: 300 QEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP 359 QEAVDAL DNGRRGRAI G NKRPLKSL+DM+KGK GRFRQNLLGKRVDYSGRSVI VGP Sbjct: 301 QEAVDALFDNGRRGRAIAGPNKRPLKSLSDMLKGKSGRFRQNLLGKRVDYSGRSVIVVGP 360 Query: 360 YLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREH 419 L+LHQCGLPKKMALELFKPFIY KLE RG TTIK+AKKMVE+E VWD+L+EVIREH Sbjct: 361 ELKLHQCGLPKKMALELFKPFIYNKLEERGYVTTIKSAKKMVEKERPEVWDVLEEVIREH 420 Query: 420 PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLE 479 PV+LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVC A+NADFDGDQMAVH+PL++E+Q+E Sbjct: 421 PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHLPLSVESQVE 480 Query: 480 ARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNA------------------- 520 AR LMMSTNNILSPA+G+PIIVPSQD+VLG YYMTRD Sbjct: 481 ARVLMMSTNNILSPAHGKPIIVPSQDMVLGAYYMTRDRRFERVIDETTGKEKIDAESGLP 540 Query: 521 -----KGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVG 575 KG G V +GP E + +G + A VKVR+ D K + DTTVG Sbjct: 541 IYRKVKGTGKVFSGPDEVRIAFDAGEVDMQATVKVRMKNLVSD------EKPQMIDTTVG 594 Query: 576 RAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARS 635 R IL I+P +P+S VN+ + KK +S +++TCYR+ K TVI AD++ GF YA + Sbjct: 595 RVILKEILPDSVPFSAVNKVMNKKELSNLVDTCYRMADNKETVILADKLKDIGFRYANLA 654 Query: 636 GASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSK 695 G S+ +DDMVIPE K EI+++AE EV EIQ Q+ GL+T GERYNKVIDIWA A + ++K Sbjct: 655 GISICLDDMVIPEGKTEILTKAEDEVKEIQNQYTEGLITDGERYNKVIDIWAKATEDIAK 714 Query: 696 AMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSII 755 M+DNL E ++ SFN+I+MMADSGARGS QIRQLAGMRGLMAKP G II Sbjct: 715 EMLDNLSKEKFFVEGVGVSEEASFNAIHMMADSGARGSHQQIRQLAGMRGLMAKPSGEII 774 Query: 756 ETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCG 815 ETPITANFREGL VLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQD ++ E+DCG Sbjct: 775 ETPITANFREGLTVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDAIIAEEDCG 834 Query: 816 THEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEEN 875 T +G++++ + EGG+V E + DR+LGRV +D+L P T D+LV N + E +E+ Sbjct: 835 TLDGLVVSSLTEGGEVIEHIGDRILGRVALDDILDPITGDVLVAANEDIDENLVKRIEDA 894 Query: 876 SVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTF 935 ++ VK+RSV++C + G+C+ CYGRDLARGH +N GEA+GVIAAQSIGEPGTQLTMRTF Sbjct: 895 GLEKVKIRSVLTCQSRRGICSKCYGRDLARGHSVNMGEAVGVIAAQSIGEPGTQLTMRTF 954 Query: 936 HIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESY 995 HIGG ASR A ++S++ + G +K N+ +V+N+ G ++ +RN E+ ++DE GR +E Y Sbjct: 955 HIGGTASRRAEQTSLESRTDGILKFINLNTVINAEGHHIVMNRNGEIAVVDETGREREKY 1014 Query: 996 KVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTG 1055 V YGA + G V G +A WDP+TMP++TE SG V+F D+++G T+ Q DE+TG Sbjct: 1015 LVLYGAKIKIAPGGAVTQGGILAEWDPYTMPILTEFSGKVKFGDIVEGVTMEEQLDEVTG 1074 Query: 1056 LSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI 1115 LS V+++S + RP + I G D T +YFLP A + ++D I Sbjct: 1075 LSRKVIIESKDSDK-----RPRIAIK-GMGGDSADAVTGTIGRYFLPVGANITVQDDSVI 1128 Query: 1116 SSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRL 1175 S+GD +A+IP+E+ TKDITGGLPRVA+LFEAR+PK+ A+++EI G VS+GK+ KGKR++ Sbjct: 1129 SAGDIIAKIPRETTKTKDITGGLPRVAELFEARKPKDFAVISEIDGRVSYGKDAKGKRKV 1188 Query: 1176 VITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVN 1235 ++TP G +P E +IPK + ++V EG+ V G+ + DG PHDILR+ GV + +Y+V+ Sbjct: 1189 IVTPEMG-EPKEYLIPKGKHISVHEGDHVRAGEPLMDGSSNPHDILRVLGVKELAKYLVD 1247 Query: 1236 EVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEAN 1295 EVQ+VYRLQGVKINDKHIEVIVRQMLR+ I + G + L +QVE + N+++ Sbjct: 1248 EVQEVYRLQGVKINDKHIEVIVRQMLRRVRIKDVGDTSLLVDDQVERWVFETENQKVMNE 1307 Query: 1296 GKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGR 1355 GK A LLGITKASL+TESFISAASFQETT+VLT+AA+ GK D LRGLKENVI+GR Sbjct: 1308 GKRPAIAEPLLLGITKASLSTESFISAASFQETTKVLTQAAIEGKVDYLRGLKENVIMGR 1367 Query: 1356 LIPAGTGYAYHQDRMRRRAAGEAPAAPQVTAEDASA 1391 LIPAGTG + +++ +R P A +ED Sbjct: 1368 LIPAGTGLSSYRN-IRMLTEASEPVAQAAESEDVPD 1402 >UniRef50_A0L5W7 DNA-directed RNA polymerase subunit beta' n=4 Tax=cellular organisms RepID=RPOC_MAGSM Length = 1412 Score = 1406 bits (3639), Expect = 0.0, Method: Composition-based stats. Identities = 837/1402 (59%), Positives = 1066/1402 (76%), Gaps = 25/1402 (1%) Query: 2 KDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARI 61 + + K + FD I+I++ASP+ IRSWSFGEVKKPETINYRTFKPERDGLFCA+I Sbjct: 20 QSVFKLFSRPMLGQSFDGIRISIASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAKI 79 Query: 62 FGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLP 121 FGPVKDYECLCGKYKRLKHRGV+CEKCGVEV Q+KVRRERMGHIELA+P AHIWFLKSLP Sbjct: 80 FGPVKDYECLCGKYKRLKHRGVVCEKCGVEVIQSKVRRERMGHIELAAPVAHIWFLKSLP 139 Query: 122 SRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMG 181 SRIGLLLDM L+D+ERVLYFE++VV+E GMT ++R ++LTE++Y +EEFGDEF A +G Sbjct: 140 SRIGLLLDMTLKDLERVLYFENFVVLESGMTPMKRGELLTEDRYYQLIEEFGDEFRAGIG 199 Query: 182 AEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTV 241 AEAI+ +L + + +E QLR+EL +T+SE +RKK+ KR+ LEAF S N PEWMIL V Sbjct: 200 AEAIREMLVDLKIPEEINQLRDELRDTSSEARRKKIVKRLHTLEAFQDSKNSPEWMILEV 259 Query: 242 LPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQE 301 +PV+PP+LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL +L APDII+RNEKRMLQE Sbjct: 260 IPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLFELKAPDIIIRNEKRMLQE 319 Query: 302 AVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYL 361 +VDAL DNGRRGR ITG+NKRPLKSL++M+KGKQGRFR NLLGKRVDYSGRSVI VGP L Sbjct: 320 SVDALFDNGRRGRVITGTNKRPLKSLSEMLKGKQGRFRLNLLGKRVDYSGRSVIVVGPEL 379 Query: 362 RLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPV 421 +LH+CGLPKKMALELFKPFIY +LE RGLATTIKAAK+MVE+E+ VWDIL+EVIREHPV Sbjct: 380 KLHECGLPKKMALELFKPFIYNRLEERGLATTIKAAKRMVEKEKGEVWDILEEVIREHPV 439 Query: 422 LLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEAR 481 +LNRAPTLHRLGIQAFEP L+EGKAIQLHPLVC A+NADFDGDQMAVHVPL++EAQ+EAR Sbjct: 440 MLNRAPTLHRLGIQAFEPKLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSIEAQIEAR 499 Query: 482 ALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGL 541 LMMSTNNILSPANG+PIIVP+QD++LGLYYMT + N GEGM+ + E ++ + +G+ Sbjct: 500 VLMMSTNNILSPANGKPIIVPTQDIILGLYYMTSERANVAGEGMIFSNTMEVKQAFDAGV 559 Query: 542 ASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAI 601 A+LHA ++ R TTVGR +L ++P+ + + +N+ + KK + Sbjct: 560 ANLHASIQCRFR-------------GKRVHTTVGRMLLADMLPERIDFQAINKLITKKEV 606 Query: 602 SKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEV 661 +K+++ YR+ G K TVIF D++M GFA+A R+G S G DDMVIPE K +++ A+ +V Sbjct: 607 TKLIDHTYRMCGTKDTVIFTDRLMAMGFAFACRAGISFGKDDMVIPEAKRKLVDAAQEKV 666 Query: 662 AEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNS 721 EI++Q+ GL+T GE+YNKV+DIW+ +RV+ MM + T+TV+N+DG+ +Q SFNS Sbjct: 667 KEIEKQYTDGLITEGEKYNKVVDIWSHCTERVADEMMGTISTDTVLNKDGEMVEQPSFNS 726 Query: 722 IYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARK 781 I+MMA+SGARGSAAQ+RQLAGMRGLMAKP G I+ETPITANFREGL VLQYFISTHGARK Sbjct: 727 IFMMANSGARGSAAQMRQLAGMRGLMAKPSGEIMETPITANFREGLTVLQYFISTHGARK 786 Query: 782 GLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLG 841 GLADTALKTANSGYLTRRLVDVAQD +V E+DCGT GI + ++EG DV E L DR+LG Sbjct: 787 GLADTALKTANSGYLTRRLVDVAQDCIVREEDCGTSIGITVAALVEGNDVVETLGDRLLG 846 Query: 842 RVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGR 901 R D+ P T ++LV T++ E + +E ++VD+V +RS ++C+T GVC CYGR Sbjct: 847 RTPVSDIKDPITDELLVKAGTIMDEDIVEKIENSNVDSVLIRSPLTCETTRGVCVTCYGR 906 Query: 902 DLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLS 961 DLARG + GEA+GVIAAQSIGEPGTQLTMRTFHIGG ASR A +S + + G +K Sbjct: 907 DLARGTRVTVGEAVGVIAAQSIGEPGTQLTMRTFHIGGTASRQAEQSHQETTHGGVLKFH 966 Query: 962 NVKSVVNSSGKLVITSRNTELKLID--------EFGRTKESYKVPYGAVLAKGDGEQVAG 1013 ++ +V + +G+ V+ SRN+E+ L + E GR +E Y++PYGA ++ G V Sbjct: 967 DLITVQDRAGRYVVLSRNSEVSLHEAVEHEGQVEAGRERERYRIPYGARISSAPGSVVEK 1026 Query: 1014 GETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKD 1073 G T A WDP MP+ITEV G V+F D++DG ++ D+ TGL S V + +++ D Sbjct: 1027 GTTFAEWDPFAMPIITEVEGIVKFGDLVDGVSLRENMDDTTGLISKEVTEWKGQSSKKGD 1086 Query: 1074 LRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKD 1133 +RP + + D N+ L+ +Y+LP A++ + +G + GD +A++ ++S +D Sbjct: 1087 MRPRITLKDVNSNETLMMPNGSECRYYLPVGAVIVVNEGDHVHGGDIIAKVLRQSTKNRD 1146 Query: 1134 ITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKW 1193 ITGGLPRV +LFEAR+PKE + +AE G+V++GK+ KGKRRLV+TP D +P E ++PK Sbjct: 1147 ITGGLPRVVELFEARKPKEHSFIAENEGMVTYGKDLKGKRRLVVTP-DSGEPMEYLLPKG 1205 Query: 1194 RQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHI 1253 +QL V EG+ V +G+ + +G P DIL++ G+ + R++VNE+Q+VYRLQGV+INDKHI Sbjct: 1206 KQLAVNEGDWVRKGEPLMEGSPVPQDILKVLGLEELCRFMVNEIQEVYRLQGVRINDKHI 1265 Query: 1254 EVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKAS 1313 EVIVRQML+K I + G + F+ GEQVE + N + + G AT + LLGITKAS Sbjct: 1266 EVIVRQMLQKVQITDPGDTMFVSGEQVEKDDYLLENVKTDKRGGRVATCTPLLLGITKAS 1325 Query: 1314 LATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRM--- 1370 L+T SFISAASFQETTRVLTEAA++G+ D L GLKENVIVGRLIPAGTG Q + Sbjct: 1326 LSTPSFISAASFQETTRVLTEAAISGRVDTLNGLKENVIVGRLIPAGTGNILSQLKKMGS 1385 Query: 1371 RRRAAGEAPAAPQVTAEDASAS 1392 + Q A+ AS+S Sbjct: 1386 LTKGEKSTQGGEQHVAKVASSS 1407 >UniRef50_Q2N5Q5 DNA-directed RNA polymerase subunit beta' n=126 Tax=Bacteria RepID=RPOC_ERYLH Length = 1438 Score = 1375 bits (3558), Expect = 0.0, Method: Composition-based stats. Identities = 810/1393 (58%), Positives = 1023/1393 (73%), Gaps = 29/1393 (2%) Query: 1 MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60 M +L KF K E FD I+I +ASP+ IRSWSFGE+KKPETINYRTFKPERDGLFCAR Sbjct: 1 MNELTKFTNQLAKPETFDQIQIGIASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR 60 Query: 61 IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120 IFGPVKDYECLCGKYKR+K++GV+CEKCGVEVT TKVRRERMGHIELA+P AHIWFLKSL Sbjct: 61 IFGPVKDYECLCGKYKRMKYKGVVCEKCGVEVTVTKVRRERMGHIELAAPVAHIWFLKSL 120 Query: 121 PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFG-DEFDAK 179 PSRIGLLLDM L+ +ERVLYFE Y+V E G+T LE+ Q+LTE++ L+A +E+G D F A Sbjct: 121 PSRIGLLLDMQLKQLERVLYFEHYIVTEPGLTPLEKFQLLTEDELLEAQDEYGEDAFSAG 180 Query: 180 MGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMIL 239 +GAEA++ +L +DLEQE E L EEL T S+ K K+ KR+K++E+F++SGN+PEWMIL Sbjct: 181 IGAEAVKFMLMDLDLEQEKEDLLEELATTKSKLKPAKIIKRLKVVESFIESGNRPEWMIL 240 Query: 240 TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRML 299 V+PV+PP+LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL++L APDIIVRNEKRML Sbjct: 241 EVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRML 300 Query: 300 QEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP 359 QE+VDAL DNGRRGR ITG+NKRPLKSL+DM+KGKQGRFRQNLLGKRVDYSGRSVI GP Sbjct: 301 QESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP 360 Query: 360 YLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREH 419 L+LHQCGLPKKMALELFKPFIY +L+ +GL+ T+K AKK VE+E VWDILDEVIREH Sbjct: 361 ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH 420 Query: 420 PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLE 479 PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVC+A+NADFDGDQMAVHVPL+LEAQLE Sbjct: 421 PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE 480 Query: 480 ARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMV------------L 527 AR LMMSTNNILSPANG+PIIVPSQD+VLGLYY++ + E + Sbjct: 481 ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSMERQEKTPEYIEEKDGTKIEKLPRF 540 Query: 528 TGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPK-- 585 E + + +LH R+ R+ A+ + + TT GR ++ +PK Sbjct: 541 ADMAEVHQALETKSVTLHTRIIARV----PQADEDGKPEMKRFVTTPGRMLIGECLPKNH 596 Query: 586 GLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMV 645 +PY IVN+ L KK I +++ YR G K TV+FAD IM GF +A ++G S G DDM+ Sbjct: 597 KVPYDIVNRLLTKKEIGDVIDQVYRHTGQKDTVLFADAIMVLGFRHAFKAGISFGKDDMI 656 Query: 646 IPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTET 705 IP+ K +I + + +VA+ ++Q+Q GL+T E+YNKVID W+ D+V++AMMD ++++ Sbjct: 657 IPDSKEGMIEDTKKQVADYEQQYQDGLITQQEKYNKVIDAWSRCGDQVAEAMMDEIKSQK 716 Query: 706 VINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFRE 765 + K+ NSIYMM+ SGARGS AQ++QLAGMRGLMAKP G IIE PI +NF+E Sbjct: 717 FDK----DGKESEINSIYMMSHSGARGSPAQMKQLAGMRGLMAKPSGEIIENPIISNFKE 772 Query: 766 GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPV 825 GL VL+YF STHGARKGLADTALKTANSGYLTRRLVDV+QD V+ E+DC T + M + Sbjct: 773 GLTVLEYFNSTHGARKGLADTALKTANSGYLTRRLVDVSQDCVIVEEDCKTDNALEMRAI 832 Query: 826 IEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSV 885 ++GG V L +R+LGR +D++ T +++V TLL E +EE V ++RS Sbjct: 833 VQGGSVIASLGERILGRTLVDDLVNAKTDEVIVKAGTLLDEPMVKAIEEAEVQVARIRSP 892 Query: 886 VSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAA 945 + C+ D GVCA CYGRDLARG +N GEA+GVIAAQSIGEPGTQLTMRTFHIGGAA Sbjct: 893 LVCEADQGVCATCYGRDLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNE 952 Query: 946 AESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAK 1005 S ++ + G ++ ++ ++ + G+++ +RN EL +ID GR +E +KVPYG VL Sbjct: 953 T-SHLESISDGKVEYRDMPTITDKKGRILSLARNGELAVIDAEGREREIHKVPYGTVLMH 1011 Query: 1006 GDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSA 1065 DG +V G+ +A WDP ++P+ITE SG V++ D+I+G T+ QTD+ TG++ VV ++ Sbjct: 1012 KDGAKVKEGDRLAEWDPFSLPIITEQSGVVKYQDLIEGTTLEEQTDDATGIAQRVVTENR 1071 Query: 1066 ERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIP 1125 K+ + ++G +Y L + + DG + +GD LAR Sbjct: 1072 ATGRKKKEDLRPRLTLLSEGQS---EDETEAQRYLLAPGTTLSVTDGQTVEAGDILARAS 1128 Query: 1126 QESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDP 1185 +E+ T+DITGGLPRVA+LFEAR PK+ A++A+ISG + F +E K KR++ I P +G + Sbjct: 1129 REAAKTRDITGGLPRVAELFEARVPKDNAVIAKISGKIEFVREYKAKRKIAIVPEEG-EA 1187 Query: 1186 YEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQG 1245 + +IPK + ++V EG+ V++GD + G PHDIL + GV A+ Y+ E+Q+VYRLQG Sbjct: 1188 VDYLIPKTKVIDVQEGDFVKKGDTLISGSPNPHDILDVLGVEALAEYLCTEIQEVYRLQG 1247 Query: 1246 VKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRD 1305 VKINDKHIEVIVRQML+K I + G + L GEQV+ + AN +L GK AT + Sbjct: 1248 VKINDKHIEVIVRQMLQKVEITDGGDTVLLPGEQVDRDEMDEANAKL-GRGKKPATGNPV 1306 Query: 1306 LLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAY 1365 LLGITKASL T SFISAASFQETTRVLT+A+V GK+D L GLKENVIVGRLIPAGTG Sbjct: 1307 LLGITKASLQTRSFISAASFQETTRVLTQASVEGKKDTLIGLKENVIVGRLIPAGTGAGM 1366 Query: 1366 HQDRMRRRAAGEA 1378 ++ R+ A A Sbjct: 1367 NRMRVTASARDAA 1379 >UniRef50_B2UQY1 DNA-directed RNA polymerase subunit beta' n=5 Tax=Verrucomicrobia RepID=RPOC_AKKM8 Length = 1398 Score = 1339 bits (3465), Expect = 0.0, Method: Composition-based stats. Identities = 712/1408 (50%), Positives = 967/1408 (68%), Gaps = 36/1408 (2%) Query: 11 QTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYEC 70 K FD + I +A PD IRSWSFGEV PETINYRTFKPE+ GLFC RIFGP +D EC Sbjct: 14 SDKPRTFDQVAITVADPDTIRSWSFGEVVNPETINYRTFKPEKGGLFCERIFGPTRDMEC 73 Query: 71 LCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDM 130 CGKYKR+KH+G+ C++CGVEVT +VRRERMGHIELA P +HIWF K +PSRIGL+LDM Sbjct: 74 ACGKYKRIKHKGITCDRCGVEVTNARVRRERMGHIELAVPVSHIWFYKCMPSRIGLMLDM 133 Query: 131 PLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFG-DEFDAKMGAEAIQALL 189 R +ERV+Y+E Y+V++ G T LE+ ILTEE++ +A +E+G D F+A MGAEAIQ +L Sbjct: 134 TARHLERVIYYEDYIVVDPGSTPLEKGAILTEEEFRNAEDEYGYDSFEAGMGAEAIQKML 193 Query: 190 KSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDL 249 ++DL L+E+L+ TNS+ ++K+ KR+KL + F+QS +PEWMIL VLPV+PPDL Sbjct: 194 AAIDLPTLVADLQEQLDNTNSKQNKRKIAKRLKLAQGFLQSNTRPEWMILNVLPVIPPDL 253 Query: 250 RPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDN 309 RPLVPL+GGRFATSDLNDLYRRVINRNNRLK LL L P++I+RNEKRMLQEAVDAL DN Sbjct: 254 RPLVPLEGGRFATSDLNDLYRRVINRNNRLKTLLSLKTPEVIIRNEKRMLQEAVDALFDN 313 Query: 310 GRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLP 369 GR GRA+TG+ RPLKSL+DM+KGK GRFRQNLLGKRVDYSGRSVI +GP L+L+QCGLP Sbjct: 314 GRHGRAVTGAGNRPLKSLSDMLKGKGGRFRQNLLGKRVDYSGRSVIVIGPELKLNQCGLP 373 Query: 370 KKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTL 429 KKMAL LF+PFI +L+ G T+++AKK+++R+ VWDIL+EV + HPV+LNRAPTL Sbjct: 374 KKMALILFEPFIIHRLKELGYVHTVRSAKKLIDRKTPEVWDILEEVTKGHPVMLNRAPTL 433 Query: 430 HRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNN 489 HRL IQAFEPVLIEG AI+LHPLVC AYNADFDGDQMAVHVPL++EAQ+EAR LM++ NN Sbjct: 434 HRLSIQAFEPVLIEGSAIRLHPLVCNAYNADFDGDQMAVHVPLSVEAQMEARQLMLAPNN 493 Query: 490 ILSPANGEPIIVPSQDVVLGLYYMT-------RDCVNAKGEGMVLTGPKEAERLYRSGLA 542 I SPA+G+PI P+QD++LG Y++T ++ + + E E + Sbjct: 494 IFSPASGKPIATPTQDIILGAYFLTHTRAAEVQNNQDNHHHLPLFESIDEVEYAIAARKI 553 Query: 543 SLHARVKVRITEYEKDANGELVAKTSLKD--TTVGRAILWMIVPKGLPYSIVNQALGKKA 600 H +++ +Y K + + + K TT GR I P+ L +N+ +GKK Sbjct: 554 GYHDWIRLHNPDYGKKPSEVVYGDVTKKVIITTAGRVRFNEIWPREL--GYINRNVGKKQ 611 Query: 601 ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAE 660 + ++ CY+ +G + TV D + GF A RSG S+GI DMV+P +K I +A AE Sbjct: 612 MGDIIWRCYQTVGKERTVQTLDALKNLGFKEATRSGCSIGIVDMVVPSQKKTEIEKAYAE 671 Query: 661 VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFN 720 + ++ Q+++G++T GERY KV+DIW D + A+ L+ + Sbjct: 672 LDKVTRQYKNGIITDGERYQKVVDIWTQTTDVIQAALYRKLEHNEGSKM---------AS 722 Query: 721 SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR 780 ++MM DSGARG+ AQI+QL+GMRGLMAKP G IIE PITANFREGL+VL+YFISTHGAR Sbjct: 723 PLFMMVDSGARGNKAQIKQLSGMRGLMAKPSGEIIERPITANFREGLSVLEYFISTHGAR 782 Query: 781 KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVL 840 KGLADTALKTA+SGY+TR+LVDVAQD++V +DCGT GI + + +G + L R+ Sbjct: 783 KGLADTALKTADSGYMTRKLVDVAQDVIVHAEDCGTSNGITVHAIYDGDEEVASLSSRIY 842 Query: 841 GRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYG 900 GR + E ++ P + +++V N L++E+ + LE+ ++ +K+RSV++C+ G CA CYG Sbjct: 843 GRTSCERIVDPVSGEVIVDINDLINEKQAEQLEKIGIERLKIRSVLTCELKKGCCAKCYG 902 Query: 901 RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL 960 +LA G + GEA+G+IAAQSIGEPGTQLTMRTFH+GG A+ A + ++ KN G + Sbjct: 903 LNLATGQEVKIGEAVGIIAAQSIGEPGTQLTMRTFHVGGTATTAFKQPIVKAKNDGRVIY 962 Query: 961 -SNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVAN 1019 ++++V N+ G V+ ++N +++ +E GR ESY+ G +L +G + ET+A Sbjct: 963 TEDLRTVENADGNFVVLNKNCSVRIENEQGRELESYQPVIGTILYVPNGGTIKKDETLAT 1022 Query: 1020 WDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALK 1079 WDP+ +PVI E G V F DMI G T++++TD TG SSLVV++ ++L P + Sbjct: 1023 WDPYNVPVIAEKGGIVEFKDMIVGITVSKETDRETGASSLVVMEHK------QELHPQVV 1076 Query: 1080 IVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLP 1139 I DA+ +VL A + +P A + ++DG IS+G +A+ P++ TKDITGGLP Sbjct: 1077 IRDAKTREVL-------AHHAIPAGANLTVKDGETISAGTMVAKTPRKVAKTKDITGGLP 1129 Query: 1140 RVADLFEARRPKEPAILAEISGIVSFGKETKGK-RRLVITPVDGSDPYEEMIPKWRQLNV 1198 RVA+LFEAR+PK+ +A + GIV + + ++++ + + ++P + + V Sbjct: 1130 RVAELFEARKPKDACTIARVEGIVRLSSKNTSRGKKVITIETPTGELVDHLVPMNKHVIV 1189 Query: 1199 FEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVR 1258 E + V GD +++GP +P +IL + G + ++VNEVQ+VYRLQGV+INDKH+E+IVR Sbjct: 1190 HEDDHVHLGDQLTEGPVSPEEILDVCGKERLQEHLVNEVQEVYRLQGVEINDKHVEIIVR 1249 Query: 1259 QMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATES 1318 QMLRK I G+++FL G+QV+ + N + A G A LLGITKASL TES Sbjct: 1250 QMLRKVVITEPGNTEFLWGDQVDKTTFDRINEQTVAQGGQPAAAKPVLLGITKASLETES 1309 Query: 1319 FISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEA 1378 FISAASFQ+TTRVLTEA+ GK D L G KENVI+G LIPAGTG++ + A G Sbjct: 1310 FISAASFQDTTRVLTEASTLGKTDTLEGFKENVIMGHLIPAGTGFSRYSKIEVEPAEGAE 1369 Query: 1379 PAAPQVTAEDASASLAELLNAGLGGSDN 1406 A E+A+ ++LN + + Sbjct: 1370 EIAAASEEEEAAELAEDMLNDTINFDNE 1397 >UniRef50_Q7URW4 DNA-directed RNA polymerase subunit beta' n=8 Tax=Bacteria RepID=RPOC_RHOBA Length = 1429 Score = 1324 bits (3426), Expect = 0.0, Method: Composition-based stats. Identities = 697/1440 (48%), Positives = 968/1440 (67%), Gaps = 66/1440 (4%) Query: 7 FLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVK 66 + ++ +++I+LA P I++WSFGEVKKPETINYRT++PE+DGLFC RIFGP K Sbjct: 5 ETSNYDRINDYASVRISLARPQDIKAWSFGEVKKPETINYRTYRPEKDGLFCERIFGPEK 64 Query: 67 DYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGL 126 D+EC CGKY+ +K++G+IC++CGV+VT ++VRR+RMGHIELA+P HIWF K++PSR+G Sbjct: 65 DWECACGKYRGMKYKGMICDRCGVKVTHSRVRRKRMGHIELAAPVVHIWFFKAMPSRLGN 124 Query: 127 LLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGD-EFDAKMGAEAI 185 LL M +E+V+YF+ YVV + T+LE Q+LTEE+Y A +++G F A MGAEA+ Sbjct: 125 LLAMKTSSLEKVIYFQDYVVTDPKDTDLEMLQLLTEEEYRAARQQYGSGSFQADMGAEAV 184 Query: 186 QALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVL 245 + LL +DL +QLR +L ET S+ K+K L R+K++E+ S N+PEWM+L V+PV+ Sbjct: 185 RDLLNKLDLVTLSDQLRVDLAETGSKQKKKDLINRLKIVESIRDSDNRPEWMVLDVIPVI 244 Query: 246 PPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDA 305 PPDLRPLV LD G FATSDLNDLYRR+INRNNRL++L+DL AP++I+RNEKRMLQ++VDA Sbjct: 245 PPDLRPLVLLDSGNFATSDLNDLYRRIINRNNRLRKLVDLNAPEVIIRNEKRMLQQSVDA 304 Query: 306 LLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQ 365 L DN R R + GS+ RPLKSL DMIKGKQGRFR+NLLGKRVDYS RSVI VGP L+LHQ Sbjct: 305 LFDNNRCKRPVLGSSNRPLKSLTDMIKGKQGRFRENLLGKRVDYSARSVIVVGPRLKLHQ 364 Query: 366 CGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNR 425 CGLPKK+ALEL++PFI +L+ G A TIK+AKKM+ER++ VWDIL++VI HPVLLNR Sbjct: 365 CGLPKKIALELYQPFIIRRLKELGHADTIKSAKKMLERKDEEVWDILEQVITNHPVLLNR 424 Query: 426 APTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMM 485 APTLHR+GIQAFEP L+EG AI LHPLVC +NADFDGDQMAVH+PL++EAQ+EA LMM Sbjct: 425 APTLHRMGIQAFEPTLVEGNAIHLHPLVCKGFNADFDGDQMAVHLPLSIEAQVEAHTLMM 484 Query: 486 STNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLH 545 STNN+ +P+NG+PI+ PSQD+V+G Y+MT + + KGEGM + +E + G+ LH Sbjct: 485 STNNVFAPSNGKPIMSPSQDIVMGCYFMTVEMPDQKGEGMTFSTYEEVDYALAQGIVGLH 544 Query: 546 ARVKVRITEYEKDANGELVAK-TSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM 604 R+K+R+ +Y+K + + ++ DTT GR ++P G+ N+A+ ++K Sbjct: 545 TRIKLRLPKYQKLKTDDESGEYGAIIDTTPGRVRFNEMLPVGM--DFYNRAMRSGDLAKS 602 Query: 605 LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEI 664 ++ CY+ LG K T+ D +M TGF + RSG S DD+V P+ K + I EAE EV + Sbjct: 603 ISDCYQRLGRKATIHLLDDMMQTGFRESTRSGLSFATDDLVTPDTKLQFIKEAEKEVMKH 662 Query: 665 QEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 724 ++ + GL+T ERYN+V+D W A + ++ MM ++ + N +++ Sbjct: 663 KKAYDRGLMTGKERYNQVLDAWTHAREAITADMMSAMENDIRPGGWYI-------NPVFL 715 Query: 725 MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA 784 M+ SGARG QIRQLAGMRGLMAKP G IIETPI ANFREGL+VL+YF STHGARKGLA Sbjct: 716 MSHSGARGGIEQIRQLAGMRGLMAKPTGEIIETPIKANFREGLSVLEYFSSTHGARKGLA 775 Query: 785 DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT 844 DTALKTA+SGYLTR+L DVAQ++VVT DCGT +GI V G V+ L + + GRV+ Sbjct: 776 DTALKTADSGYLTRKLADVAQNVVVTMHDCGTTQGITKGVVYRGEKVEVSLAESINGRVS 835 Query: 845 AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA 904 + ++ P T +++V N ++ + +E ++ ++VR+ +SCD GVC CYG D++ Sbjct: 836 LKSIVNPVTDEVIVEANQMITPEIARNIEAMGLEKIQVRTPMSCDAPLGVCRCCYGMDMS 895 Query: 905 RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVK 964 G ++ +G A+G+IAAQSIGEPGTQLTMRTFHIGG+ S+ ES I+ G ++L+ +K Sbjct: 896 TGSMVEEGMAVGIIAAQSIGEPGTQLTMRTFHIGGSVSKQVEESDIKTSRDGEVRLTRMK 955 Query: 965 SVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT 1024 +V N+ G+ ++ +RN ++ L+D+ GR ESY +P GA+L +G++V G+ + W+P++ Sbjct: 956 AVTNAEGRDIVLTRNGQIMLVDDRGREVESYDIPTGAMLMVKEGDKVTAGQVLCEWNPYS 1015 Query: 1025 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ 1084 +P+++EV+G +RF D+++G+T+ E +G + + ++D DL P L I D Sbjct: 1016 IPILSEVTGKIRFEDVVEGETMRLDR-EASGNTRMTIIDHK------GDLHPQLVIEDET 1068 Query: 1085 GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL 1144 G + AQY P +A + +++G ++ G LA +P+E+GG DITGGLPRV ++ Sbjct: 1069 GR-------PLHAQYL-PERATISVKEGEEVIPGKVLAEMPRETGGVSDITGGLPRVTEI 1120 Query: 1145 FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV 1204 FEAR+PK+PA++AE+ G V E K +R +I + E ++P + V G+ V Sbjct: 1121 FEARKPKDPAVIAEVDGEVEILSERKRGKRTIIVRSESGIEREHLVPHGKHFLVHTGDIV 1180 Query: 1205 ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 1264 + G + DG PHDILR+ G AV +Y+++E+Q VYR Q V+INDKH E+I+ +MLRK Sbjct: 1181 KAGQALVDGALVPHDILRVTGEEAVQQYLLHEIQQVYRSQRVEINDKHGEIIIARMLRKV 1240 Query: 1265 TIVNAGSSDFLEGEQVEYSRVKIANREL-------------------------------- 1292 I NAG ++ L G ++ + AN++L Sbjct: 1241 KIENAGDTNLLPGSVMDRFHFRKANQDLQKCIKIANPGDTDYTEGTIVPKEAFEQTNAEV 1300 Query: 1293 EANGKVGATYSR--------DLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDEL 1344 EA G A R LLGITKA++ + SFISAASFQETT+VLTEAA+AGK D+L Sbjct: 1301 EAMGGTPAKGKRCKSATASTQLLGITKAAVQSNSFISAASFQETTKVLTEAALAGKVDKL 1360 Query: 1345 RGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQVTAEDASASLAELLNAGLGGS 1404 GLKENVI+G LIPAGTG+ Q+ Q S L G S Sbjct: 1361 VGLKENVILGHLIPAGTGFRIFQESEVNYRREALEELSQAPVSALEESFPLLGGDGEPAS 1420 >UniRef50_C1A6N8 DNA-directed RNA polymerase n=2 Tax=Bacteria RepID=C1A6N8_GEMAT Length = 1436 Score = 1317 bits (3407), Expect = 0.0, Method: Composition-based stats. Identities = 743/1458 (50%), Positives = 979/1458 (67%), Gaps = 98/1458 (6%) Query: 1 MKDLLKFLKAQTKTEEFDAIKIALASPDMIRS------------------WSFGEVKKPE 42 M D + + FD + + +AS + IR WS+GEV KPE Sbjct: 1 MIDFRS--SREARASAFDYMSVRIASAEEIRGPKDPKERERLEMAGLRTWWSWGEVTKPE 58 Query: 43 TINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERM 102 TINYR+FKPE+DGLFC RIFGPVKD+EC CGKYKR+++RGVIC++CGVEVT +KVRRERM Sbjct: 59 TINYRSFKPEKDGLFCERIFGPVKDWECHCGKYKRIRYRGVICDRCGVEVTLSKVRRERM 118 Query: 103 GHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTE 162 GHIELA P AHIWF K+LPS +G LLD+ LRD+E+V+Y+ +Y+VIE G + +Q+L E Sbjct: 119 GHIELAVPVAHIWFFKTLPSPMGNLLDVTLRDLEKVIYYSNYIVIEPGNQEVRERQLLDE 178 Query: 163 EQYLDALEEFGDE----FDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLT 218 ++YL ++ E F +GA A++ LLK +D+++ E LR + S+ ++K++ Sbjct: 179 DEYLTLRQKAKAEGDAAFQCDIGAPAVRELLKRLDIDKVAETLRGSVVGETSQHRKKQML 238 Query: 219 KRIKLLEAFVQSG------NKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRV 272 KR+K+++AF SG N+PEWMIL V+PV+PPDLRPLVPLDGGRFATSDLNDLYRRV Sbjct: 239 KRLKIVDAFRTSGEGGEIRNRPEWMILDVIPVIPPDLRPLVPLDGGRFATSDLNDLYRRV 298 Query: 273 INRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIK 332 INRNNRL++L+ AP++I+RNEKRMLQEAVDAL DNGRR +AI G KRPLKSL+DM+K Sbjct: 299 INRNNRLQKLISHRAPEVILRNEKRMLQEAVDALFDNGRRSKAIRGRGKRPLKSLSDMLK 358 Query: 333 GKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLAT 392 GKQGRFRQNLLGKRVDYSGRSVI VGP L+LHQCGLPK MALELFKPFI KL G A Sbjct: 359 GKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPKMMALELFKPFIIHKLVESGEAE 418 Query: 393 TIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPL 452 T+K AKK+VERE A+V+++L+ +I++HPVLLNRAPTLHRLGIQAFEPVL+EGKAI++HPL Sbjct: 419 TVKRAKKIVERENAMVYEVLEGIIKDHPVLLNRAPTLHRLGIQAFEPVLVEGKAIRIHPL 478 Query: 453 VCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYY 512 VCAA+NADFDGDQMAVHVPL+ EAQ+E+R LM+S+NNIL P++G P+ PSQD+VLG Y Sbjct: 479 VCAAFNADFDGDQMAVHVPLSFEAQIESRVLMLSSNNILKPSDGRPVAEPSQDIVLGCYV 538 Query: 513 MTRD----CVNAKGEGMV-----LTGPKEAERLYRSGLASLHARVKVRITEYEKDANGEL 563 T+ +AK E V T E E +G A+ + ++ Sbjct: 539 ATKAPTDFDKHAKDEAWVRKLPTFTDTAEVEIAIANGRATYQSPIR---------WLDRR 589 Query: 564 VAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQ 623 + TT GR + +IVPKGLP +N+ + KKA+ +++ YR GL TV D+ Sbjct: 590 EETPTWVTTTTGRVLFDVIVPKGLP--FLNKDMKKKALGELVFESYRNAGLAETVALLDR 647 Query: 624 IMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVI 683 + GF A R G S+GI+D+ IP++K ++ EA V Q + +G +T GERYNKVI Sbjct: 648 LKEFGFRNATRGGVSIGIEDLHIPKEKQTLLQEASERVERFQRAYATGNITNGERYNKVI 707 Query: 684 DIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGM 743 D W AN V+ AM+ ++ E Q FN ++MM DSG+RGS QIRQLAGM Sbjct: 708 DTWTHANTDVADAMVKTMR-----------ESQGGFNPVFMMYDSGSRGSRDQIRQLAGM 756 Query: 744 RGLMAKPD-------GSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYL 796 RGLMAKP G IIE PI +NFREGL+VL+YF STHGARKGLADTALKTA++GYL Sbjct: 757 RGLMAKPQKKLTGGIGEIIENPIKSNFREGLSVLEYFSSTHGARKGLADTALKTADAGYL 816 Query: 797 TRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKP----- 851 TRRLVDVAQD+ + E+DCGT GI + + EG DV EPL +R++G V AEDV+ P Sbjct: 817 TRRLVDVAQDMTIAEEDCGTILGIDTSALKEGEDVIEPLAERLVGNVAAEDVIDPLERDE 876 Query: 852 -GTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIIN 910 G +LV TL+ E+ +EE ++ VK+RSV++C+ G+C CYGR+LA +++ Sbjct: 877 AGRPRLLVEAGTLISEEMAQSIEEAGIETVKIRSVLTCEAKRGLCRMCYGRNLATMQMVD 936 Query: 911 KGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLS-NVKSVVNS 969 GEA+G+IAAQSIGEPGTQLT+RTFH+GG ASR A +++ + K G I+ + +V+N Sbjct: 937 LGEAVGIIAAQSIGEPGTQLTLRTFHVGGTASRIAEQTARKTKKAGVIEFGDRLFTVINK 996 Query: 970 SGKLVITSRNTELKLI---DEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMP 1026 G+ V+TS EL + D+ + +VP GA L DG+ V +TV WDP++ P Sbjct: 997 EGQKVVTSYEGELVIKTSADKNASIEARLQVPLGAYLMVEDGQVVKKDDTVFTWDPYSNP 1056 Query: 1027 VITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGN 1086 +I +V G VRF D+++ ++++ + DELTGL VV++ E K L P ++I G Sbjct: 1057 IIADVDGTVRFVDLVEDESLSEELDELTGLRQRVVIEDRE-----KKLHPHIEIWQESGG 1111 Query: 1087 DVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFE 1146 + LP A++ ++DG I++G LA++ +E+ T+DITGGLPRVA+LFE Sbjct: 1112 -----KEKRVRDFILPVGAVITIDDGGHIAAGTILAKVSREAYKTRDITGGLPRVAELFE 1166 Query: 1147 ARRPKEPAILAEISGIVSFGKETKGKRRLVITP----------VDGSDPYEEMIPKWRQL 1196 ARRPK+PA ++EI G V FG+ +GKR + + P D ++ +P + L Sbjct: 1167 ARRPKDPATISEIDGFVRFGEIKRGKREVFVRPATVDKGLWTADDTAEEQTYEVPSGKHL 1226 Query: 1197 NVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVI 1256 V EG+RV GD IS+GP PHDILR++G AV Y++NEVQ+VYRLQGVKINDKHI VI Sbjct: 1227 RVHEGDRVRAGDRISEGPVNPHDILRIKGPRAVQEYLLNEVQEVYRLQGVKINDKHIGVI 1286 Query: 1257 VRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLAT 1316 V+QML+K + ++G ++ LEGE V+ S + N + + AT LLGITKASL T Sbjct: 1287 VKQMLQKVRVADSGDTELLEGEHVDRSEFRDVNDDAKKRKIRPATAEPLLLGITKASLTT 1346 Query: 1317 ESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAG 1376 +SF+SAASFQETTRVLT+AA+ G RD+L GLKEN+I+G LIPAGTG + D Sbjct: 1347 QSFVSAASFQETTRVLTDAAIRGSRDDLLGLKENIIIGHLIPAGTGLYRYHDVQVDSETL 1406 Query: 1377 EAPAAPQVTAEDASASLA 1394 P E SL Sbjct: 1407 PEPEPMPEALEPNFDSLP 1424 >UniRef50_UPI00016C3582 DNA-directed RNA polymerase beta chain n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3582 Length = 1463 Score = 1284 bits (3321), Expect = 0.0, Method: Composition-based stats. Identities = 704/1466 (48%), Positives = 937/1466 (63%), Gaps = 93/1466 (6%) Query: 6 KFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPV 65 + + +F A++I+LASP I SWS GEVKKPETINYRT++PE+DGLFC +IFGP Sbjct: 15 SEGTSYERINDFGAVRISLASPQDIHSWSHGEVKKPETINYRTYRPEKDGLFCEKIFGPE 74 Query: 66 KDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIG 125 KD+EC CGKY+ +K++G+IC++CGV+V ++VRR+RMGHIELA+ HIWF K++PSR+G Sbjct: 75 KDWECSCGKYRGMKYKGMICDRCGVKVAHSRVRRKRMGHIELAAQVVHIWFFKAMPSRLG 134 Query: 126 LLLDMPLRDIERVLYFESYVVIEGGM---TNLERQQILTEEQYLDALEEFGDEFDAKMGA 182 LLDM +E+++YF+ YVVI G T L+ +++L EE+Y + E GD F+ MGA Sbjct: 135 TLLDMKTTALEKIIYFQDYVVINPGDPEVTKLKERELLDEEKYKEKRAELGDAFEVDMGA 194 Query: 183 EAIQALLKSMDLEQECEQLREELN------ETNSETKRKKLTKRIKLLEAFVQSGNKPEW 236 EAI+ LL++++L ++LRE LN E S+ + K+L KR+K +EA S NK EW Sbjct: 195 EAIRKLLENLNLVDLSKELRERLNKEVARGEKKSKQREKELVKRLKTVEALRDSSNKCEW 254 Query: 237 MILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEK 296 M+L +PV+PPDLRPLV LD G FATSDLNDLYRR+INRNNRLK+L+DL AP++I+RNEK Sbjct: 255 MVLECIPVIPPDLRPLVLLDSGNFATSDLNDLYRRIINRNNRLKKLVDLNAPEVIIRNEK 314 Query: 297 RMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIT 356 RMLQ++VDAL DN R R + GS+ RPLKSL DMIKGKQGRFR+NLLGKRVDYS RSVI Sbjct: 315 RMLQQSVDALFDNNRCKRPVLGSSNRPLKSLTDMIKGKQGRFRENLLGKRVDYSARSVIV 374 Query: 357 VGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVI 416 VGP L+LHQCGLPKK+ALELF+PFI +L+ A TIK+AKKM+ER++ VVWDIL+EV Sbjct: 375 VGPELKLHQCGLPKKIALELFQPFIIRRLKELNHADTIKSAKKMLERKDDVVWDILEEVT 434 Query: 417 REHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEA 476 R HPV+LNRAPTLHR+GIQAFEPVLIEG AI++HPLVC +NADFDGDQMAVH+PL++EA Sbjct: 435 RSHPVMLNRAPTLHRMGIQAFEPVLIEGNAIRIHPLVCKGFNADFDGDQMAVHLPLSIEA 494 Query: 477 QLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAK-----GEGMVLTGPK 531 Q+EA LMMSTNNI SPANG PII PSQD+V+G YY+T N G+GMV P Sbjct: 495 QVEATVLMMSTNNIFSPANGNPIITPSQDIVMGCYYLTASRGNEDEAVEAGDGMVFHSPV 554 Query: 532 EAERLYRSGLASLHARVKVRITEYEKDA------------NGELVAKTSLKDTTVGRAIL 579 E R + HA+++VR+ +K L TTVGR I Sbjct: 555 ELFRAHAESKLGYHAKIRVRLPIEKKVISEIKDEKGNPRAEELPRKANGLVRTTVGRVIF 614 Query: 580 WMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASV 639 I+ + + L K +S+++ CY++LG + T+ D++ TGF +A RSG S Sbjct: 615 NDILHPKMA--FYDLPLSSKHLSRIIADCYQVLGRRETIALLDRMKETGFRHATRSGLSF 672 Query: 640 GIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMD 699 D+ PE K ++ E + EV +++ F G++T ERYNKVID+W A D ++K MM Sbjct: 673 AASDLRTPENKEGVLKEKDKEVDKVRRNFDRGIITETERYNKVIDLWMEARDLITKRMMT 732 Query: 700 NLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPI 759 +L+ + ++ + N IY+MA SGARG QIRQLAGMRGLMAKP G+IIETPI Sbjct: 733 DLRDDRRKDQVTG-REVPYLNPIYLMAHSGARGGIEQIRQLAGMRGLMAKPSGAIIETPI 791 Query: 760 TANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEG 819 +NFREGL VL+YF STHGARKGLADTALKTA+SGYLTR+L DVAQ++V+T DCGT +G Sbjct: 792 KSNFREGLTVLEYFSSTHGARKGLADTALKTADSGYLTRKLADVAQNVVITMHDCGTTQG 851 Query: 820 IMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDA 879 I + +G +V L D + GRV+ ++ P T ++++ N ++ LE+ +D Sbjct: 852 ISKGVMYKGDEVDRSLSDAIRGRVSRSEIAHPTTGEVILAENEMITPGKAKELEKLGIDK 911 Query: 880 VKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGG 939 + VRS ++C GVC CYG DLA G I+ G A+G+IAAQSIGEPGTQLTMRTFHIGG Sbjct: 912 ILVRSPMTCQAPLGVCRLCYGMDLATGSIVEDGMAVGIIAAQSIGEPGTQLTMRTFHIGG 971 Query: 940 AA--SRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKV 997 AA ++ + K G ++L + VVN G+ + + T LI E Y V Sbjct: 972 AAQSRGNVGDNEHKAKKGGIVQLERITVVVNDQGQSIALAPRTGEVLILRGKDIAERYGV 1031 Query: 998 PYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLS 1057 P+GA L +G++V G + WDPH++P+I E SG VRF D+I+G+T+ R+TD TG+ Sbjct: 1032 PHGAELLVAEGQEVQQGTGLVKWDPHSVPLIAEDSGTVRFKDIIEGKTVRRETDRATGVE 1091 Query: 1058 SLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISS 1117 +++ DL P + I +G D + Y++ +A +Q+ +G ++S+ Sbjct: 1092 RFTIMEHK------GDLHPQIVIETGRGKDDRV--------YYIHERANLQVVNGQKVSA 1137 Query: 1118 GDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLV- 1176 G LA+ P+E T+DITGGLPRV +LFEARRP+ PA++AE+ G V K +R++ Sbjct: 1138 GALLAKTPREVSQTQDITGGLPRVTELFEARRPRNPAVMAEVPGRVRIDPTRKRGKRIIE 1197 Query: 1177 -ITPVDG----SDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTR 1231 I + + E ++P + V +GE V GD + GP PHDIL++RG V Sbjct: 1198 VIKETEDGKSLGEAREHLVPASAHIRVHQGEYVTEGDPLVHGPLVPHDILKIRGEQEVQE 1257 Query: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRE 1291 Y+V EVQ VYR Q V I+DKHIE+IV QMLRK + G + L G ++ + NR Sbjct: 1258 YLVREVQSVYRSQRVDIDDKHIEIIVAQMLRKVKVTLTGDTGLLPGVVMDKFAFQEVNRR 1317 Query: 1292 LEANGKV------------------------------------------GATYSRDLLGI 1309 L A+ LLGI Sbjct: 1318 LTDECVRVVNKGDTELVEGKVYSREAFEEERAAIEKDKKKKQPTFVVPEPASCEVQLLGI 1377 Query: 1310 TKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDR 1369 TKA++ ++SFISAASFQETT+VLTEAA+A K D L GLKENVI+G LIPAGTG+ HQ+ Sbjct: 1378 TKAAVQSDSFISAASFQETTKVLTEAALASKVDYLVGLKENVILGHLIPAGTGFKTHQEA 1437 Query: 1370 MRRRAAGEAPAAPQVTAEDASASLAE 1395 + A E A A Sbjct: 1438 EVKVNVPGAAGRAAPVEEVAPDVTAG 1463 >UniRef50_Q2S1Q6 DNA-directed RNA polymerase subunit beta' n=62 Tax=root RepID=RPOC_SALRD Length = 1448 Score = 1272 bits (3292), Expect = 0.0, Method: Composition-based stats. Identities = 700/1475 (47%), Positives = 971/1475 (65%), Gaps = 111/1475 (7%) Query: 5 LKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGP 64 + + ++ +FD+I I+LASP+ I S+GEV KPETINYR+FKPE GLFC +IFGP Sbjct: 1 MPYGNSKEIETDFDSITISLASPEDILERSYGEVMKPETINYRSFKPEMGGLFCEKIFGP 60 Query: 65 VKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRI 124 VKDYEC CGKYKR++++G+IC++CGVEVT+ VRRERMGHI L+ P HIW+ K+LP++I Sbjct: 61 VKDYECHCGKYKRIRYKGIICDRCGVEVTRKAVRRERMGHISLSVPVVHIWYFKTLPNKI 120 Query: 125 GLLLDMPLRDIERVLYFESYVVIEGGMTNL---ERQQILTEEQYLDALEEFGD------- 174 G LL + +D+E+V+Y+E+Y+VI+ G E Q+LTEE+Y + L + D Sbjct: 121 GHLLGLKSKDLEKVIYYENYIVIQPGTAERLGVEENQLLTEEEYYEILYQIRDDNNRLQD 180 Query: 175 ----EFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQS 230 +F AK+G EA++ +L+ ++L++ ++LR ++ S+ ++ K KR+ ++EAF ++ Sbjct: 181 DNEEKFIAKIGGEAVETMLERLELDKLAQELRYQVRTETSQQRKSKALKRLDVVEAFREA 240 Query: 231 G----NKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLA 286 NKPEWM++ V+PV+PP+LRPLVPLDGGRFATSDLNDLYRRVI RNNRLKRL+D+ Sbjct: 241 NEDGTNKPEWMVMRVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIDIK 300 Query: 287 APDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKR 346 AP++I+RNEKRMLQEAVD+L DN R+ ++ GS+ RPLKSL+DM+KGKQGRFRQNLLGKR Sbjct: 301 APEVILRNEKRMLQEAVDSLFDNSRKSNSVRGSSNRPLKSLSDMLKGKQGRFRQNLLGKR 360 Query: 347 VDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEA 406 VDYSGRSVI GP+L LHQCGLPK+MA+ELFKPFI +L RG+ T+K+AKK V+++ Sbjct: 361 VDYSGRSVIVSGPHLELHQCGLPKEMAVELFKPFIIRRLIERGIVKTVKSAKKYVDKKTE 420 Query: 407 VVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQM 466 VWDIL++VI+ PVLLNRAPTLHRLGIQAF+PVL E KAI++HPLVC AYNADFDGDQM Sbjct: 421 DVWDILEKVIQGRPVLLNRAPTLHRLGIQAFQPVLTENKAIEIHPLVCPAYNADFDGDQM 480 Query: 467 AVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMV 526 AVHVPL+ EA LE+ LM+S++N+ SPA+G P+ VPSQD++LGLYY+T+ N KGEGM Sbjct: 481 AVHVPLSHEACLESMVLMLSSHNVRSPADGGPLAVPSQDMILGLYYITKAKSNQKGEGMR 540 Query: 527 LTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKG 586 +E + + +LHA++++R + + DTTVGR I +P Sbjct: 541 FANVQEVRQAFDQDQVALHAKIQLRDPD----------GSGEMIDTTVGRVIFNETLPDT 590 Query: 587 LPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVI 646 L VN+ L K + ++ + G + T F D I GF + SG + + D++I Sbjct: 591 L--DYVNEVLSTKNVRPVIARVLKQTGFEETADFLDAIKDMGFRRSTTSGMTFSLSDIII 648 Query: 647 PEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETV 706 P++K E+I EA V E ++ + G +T ERYN+VID+W N++VS+ + D L+ Sbjct: 649 PDEKEELIEEANETVEEAEQNYSMGFITDNERYNQVIDVWTKTNNKVSEVLFDALK---- 704 Query: 707 INRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDG---------SIIET 757 E + FN I+ MADSGARGS QIRQL GMRGLMAKP I+E Sbjct: 705 -------EHKEGFNPIFTMADSGARGSQEQIRQLGGMRGLMAKPQKNIGEGGGGGEILEN 757 Query: 758 PITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTH 817 PI +NF+EGL V +YFISTHG+RKGLADTALKTA++GYLTRRLVDV+Q + VTE DCGT Sbjct: 758 PILSNFKEGLTVQEYFISTHGSRKGLADTALKTADAGYLTRRLVDVSQSVTVTEHDCGTL 817 Query: 818 EGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSV 877 GI + + + +V PL DR+ GRV+ DV P T +++V N L+ ++ D + + S+ Sbjct: 818 RGINVGALKDNEEVVAPLSDRITGRVSVRDVYDPHTDELIVEANELITDEIADDIAQTSI 877 Query: 878 DAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHI 937 + +++RSV++C+ + GVC CYG++LA G ++ GE++GV+AAQSIGEPGTQLT+RTFH Sbjct: 878 EEIEIRSVLTCEAERGVCTLCYGQNLATGRMVEVGESVGVVAAQSIGEPGTQLTLRTFHT 937 Query: 938 GGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSG---KLVITSRNTELKLIDEFGRTKE- 993 GG A+R ES+IQ K G+++ N+++V K V+ SR E++++D G +E Sbjct: 938 GGTATREVGESTIQAKFAGTLEFENLRTVTYEDTDGPKEVVLSRQGEVRIMDTDGDRREL 997 Query: 994 -SYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDE 1052 SY VPYGA L +GE V G+ +A+WDP+ ++TE +G VRF D+I+ T +TDE Sbjct: 998 TSYVVPYGAELLVDEGEDVEDGDVLASWDPYNSLILTEANGTVRFEDIIEDTTYREETDE 1057 Query: 1053 LTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDG 1112 TG V+++S ERT L PA+ + G +Y +P A +Q+++G Sbjct: 1058 QTGHKEKVIVESRERT-----LTPAVIVETEDGE---------QREYNMPVDARIQVDEG 1103 Query: 1113 VQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGK 1172 ++ +G TLA++P+++ T DITGGLPRV +LFEAR P EPA+++EI GIVSFG + +G Sbjct: 1104 DEVQAGQTLAKMPRQAAQTSDITGGLPRVEELFEARTPDEPAVVSEIDGIVSFGDQKRGS 1163 Query: 1173 RRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRY 1232 + +++T DG M+ + + V EG+ VE GD + DG APHDIL ++G AV + Sbjct: 1164 QEVIVTSRDGDMEKSYMVSLSKHMLVHEGDYVEAGDRLCDGQIAPHDILSIKGPRAVQEH 1223 Query: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLE---------------- 1276 ++NEVQ+VYRLQGV I+DKH EV++RQM+++ I G ++FLE Sbjct: 1224 LLNEVQEVYRLQGVDIDDKHFEVVIRQMMKRVKITEPGDTNFLEEDQVDRQKMASINDDL 1283 Query: 1277 ----------------GEQVEYSRVKIANRELEANGK--------VGATYSRDLLGITKA 1312 GE + R++ N EL+ K A LLGITKA Sbjct: 1284 YDKFVVKDPSDANVEIGEVIGRRRLRELNSELKREDKPEIEVREARPAVGEPLLLGITKA 1343 Query: 1313 SLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRR 1372 SLAT+S ISAASFQETT+VLT +A+ + D L GLKENV+ G IPAGTG ++D + Sbjct: 1344 SLATDSMISAASFQETTKVLTNSAIRSRTDPLEGLKENVVAGHSIPAGTGQREYRD-LVV 1402 Query: 1373 RAAGEAPAAPQVTAEDASASLAELLNAGLGGSDNE 1407 + E D + + AG G E Sbjct: 1403 GSKSELEELQAAIGGDGESPSGDGA-AGDGAPSEE 1436 >UniRef50_C8PSU9 DNA-directed RNA polymerase n=2 Tax=Spirochaetaceae RepID=C8PSU9_9SPIO Length = 1444 Score = 1271 bits (3288), Expect = 0.0, Method: Composition-based stats. Identities = 703/1410 (49%), Positives = 939/1410 (66%), Gaps = 91/1410 (6%) Query: 13 KTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLC 72 ++FD I I LASP+ IR+WS+GEVKKPETINYRT +PERDGLFC RIFG K++EC C Sbjct: 3 DIQDFDNIMIKLASPEAIRAWSYGEVKKPETINYRTLRPERDGLFCERIFGTTKEWECYC 62 Query: 73 GKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPL 132 GK+K ++++GVIC++CGVEVT KVRRERMGHIELA+P +HIW+ +S+PSR+GLLLD+P+ Sbjct: 63 GKFKSIRYKGVICDRCGVEVTHFKVRRERMGHIELAAPVSHIWYYRSVPSRMGLLLDLPV 122 Query: 133 RDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSM 192 + VLY+E Y+VIE G T+L++ Q+L E++Y DA E +G F A MGAEA++ LL ++ Sbjct: 123 AALRSVLYYEKYIVIEPGGTDLKKNQLLNEDEYRDAQERYGGAFTANMGAEAVKTLLSNL 182 Query: 193 DLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPL 252 +L++ QLR ++ E +++ K+L KRI+++E F S NKPEWMIL V+PV+PPDLRP+ Sbjct: 183 NLDELAAQLRMKMIEKGAKSD-KRLLKRIEIVEHFRTSNNKPEWMILDVIPVIPPDLRPM 241 Query: 253 VPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRR 312 V LDGGRFATSDLNDLYRRVI+RN+RL RL+ L APDII+RNEKRMLQEAVDAL DN +R Sbjct: 242 VQLDGGRFATSDLNDLYRRVIHRNSRLTRLMSLKAPDIIIRNEKRMLQEAVDALFDNSKR 301 Query: 313 GRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKM 372 R I GS+ RPLKS++D++KGKQGRFRQNLLGKRVDYSGRSVI VGP L+L QCGLP KM Sbjct: 302 KRVIKGSSNRPLKSISDLLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLWQCGLPTKM 361 Query: 373 ALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRL 432 ALELFKPFI KL + + + IK AK MVE+E A V+ +LDEVI EHPV+LNRAPTLHRL Sbjct: 362 ALELFKPFIMKKLVQKEIVSNIKKAKLMVEQEAAPVFAVLDEVISEHPVMLNRAPTLHRL 421 Query: 433 GIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILS 492 GIQAFEPVL+EGKAI+LHPLVC +NADFDGDQMA+HVPLT AQ+E LM+S+ N+L Sbjct: 422 GIQAFEPVLVEGKAIKLHPLVCKPFNADFDGDQMAIHVPLTQAAQMECWTLMLSSRNLLD 481 Query: 493 PANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGM-VLTGPKEAERLYRSGLASLHARVKVR 551 PANG+ I+ PSQD+VLGLYY+T+ G+ + + E +G +K+ Sbjct: 482 PANGKTIVYPSQDMVLGLYYLTKQRPLKDGQHVRRYSSVSEVMMAAEAGSIGWQELLKIN 541 Query: 552 ITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRI 611 E +TT GR +P+G+P VN AL K I K++ T YR Sbjct: 542 YRGEE-------------VETTPGRLAFNEEMPEGVP--FVNIALDDKQIRKLIETVYRT 586 Query: 612 LGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSG 671 G TV D++ G+ YA GA++ +DD++IP++K +++ +A EV I Q++ G Sbjct: 587 KGTWVTVQMLDKLKSVGYYYATFFGATLSMDDIIIPKEKSDMLEKANNEVLSIYNQYRGG 646 Query: 672 LVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGAR 731 +T ERYN+V+++W+ N+ ++ MMD L + Q FN+IYMMA SGAR Sbjct: 647 HITQEERYNRVVEVWSKTNEELTTIMMDTLAKD-----------QDGFNTIYMMATSGAR 695 Query: 732 GSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTA 791 GS QIRQLAGMRGLMAKP G IIE PI +NF+EGLNV+++FIST+GARKGLADTALKTA Sbjct: 696 GSRNQIRQLAGMRGLMAKPSGDIIELPIRSNFKEGLNVIEFFISTNGARKGLADTALKTA 755 Query: 792 NSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKP 851 ++GYLTRRLVD+AQD+VV E+DCGT GI + V G +V E L +R++G+ T E V P Sbjct: 756 DAGYLTRRLVDIAQDVVVNEEDCGTINGIEYSAVKSGDEVIESLSERIVGKYTLERVEHP 815 Query: 852 GTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINK 911 + ++L+ N + ++ +EE V VK+R+V++C++ GVC CYGR+LAR I+ Sbjct: 816 ISHELLIDVNEYITDEIAAKIEEAGVQTVKLRTVLTCESKHGVCVKCYGRNLARNKIVEI 875 Query: 912 GEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSG 971 GEA+G+IAAQSIG+PGTQLTMRTFH+GG AS E+ I K IK S+ G Sbjct: 876 GEAVGIIAAQSIGQPGTQLTMRTFHVGGTASSTTEENHITFKYPVIIKDILGTSIKLDDG 935 Query: 972 KLVITSRNTELKLIDEFGRT---------------------------------------- 991 L+ T R T L T Sbjct: 936 NLLFTRRGTLLFEKVLKEYTLAAGDSVVVETGVRILRDDVLYTAADGTVVKSPLNAFAYL 995 Query: 992 ----------KESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMI 1041 ++ ++ G+ + G+ V +A +DP+ P++ E GFVRF D+I Sbjct: 996 NGSTLYLTAPEQKTEIRNGSTVVIKKGDYVPATSIIATFDPYNEPILAEQDGFVRFEDII 1055 Query: 1042 DGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFL 1101 G T+ + ++ TG+ V L+P + I D GN + Y+L Sbjct: 1056 PGSTLEEEVNDETGV----VERHISELKSDMTLQPRVFISDESGNALGF--------YYL 1103 Query: 1102 PGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISG 1161 P A + +E+ QI +G +A++P+ + T+DITGGLPRV++LFEARRPK PA+LA+++G Sbjct: 1104 PDGAQLMVEEDTQIKAGTVIAKLPKAAARTQDITGGLPRVSELFEARRPKAPAVLAQVAG 1163 Query: 1162 IVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDIL 1221 VSF KGKR +++ G D Y+ ++P ++L V +G+ VE G+ + DG PHDIL Sbjct: 1164 TVSFKGLLKGKRIVIVKDHYGKD-YKHLVPMSKRLLVRDGDTVEAGERLCDGNLDPHDIL 1222 Query: 1222 RLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVE 1281 + G +A+ Y++NE++DVYR+QGV INDKHI VIVRQMLRK +V+ G + F+ G+QV+ Sbjct: 1223 AILGENALQNYLMNEIRDVYRMQGVSINDKHIGVIVRQMLRKIEVVSVGDTRFIYGQQVD 1282 Query: 1282 YSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKR 1341 N+ + A G A GITKA+L +SFISAASFQETT+VLT AA+AGK Sbjct: 1283 KYHFHAENKRVTAEGGQPAIARPMFQGITKAALNIDSFISAASFQETTKVLTNAAIAGKV 1342 Query: 1342 DELRGLKENVIVGRLIPAGTGYAYHQDRMR 1371 DELRGLKENV++G LIPAGTG ++ Sbjct: 1343 DELRGLKENVVIGHLIPAGTGMPQYRSVKL 1372 >UniRef50_Q5GRY9 DNA-directed RNA polymerase subunit beta' n=1189 Tax=cellular organisms RepID=RPOBC_WOLTR Length = 2839 Score = 1270 bits (3285), Expect = 0.0, Method: Composition-based stats. Identities = 733/1378 (53%), Positives = 961/1378 (69%), Gaps = 23/1378 (1%) Query: 2 KDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARI 61 +++ + + FD I I++ASP+ I+S S+GEVK T NYRTFK E+ GLFC +I Sbjct: 1433 NVVIEDISHTNIAQSFDKIGISIASPENIKSMSYGEVKDVSTANYRTFKVEKGGLFCPKI 1492 Query: 62 FGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLP 121 FGPV D ECLCGKYK+ +HRG ICEKCGVEVT +KVRRERMGHIELASP AHIWFLKSLP Sbjct: 1493 FGPVNDDECLCGKYKKRRHRGRICEKCGVEVTSSKVRRERMGHIELASPVAHIWFLKSLP 1552 Query: 122 SRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFG-DEFDAKM 180 SRIG LLDM LRDIE +LY ++Y+VI+ ++ E+ +I++E+ Y +A +++G D F A Sbjct: 1553 SRIGALLDMSLRDIENILYSDNYIVIDPLVSPFEKGEIISEKIYNEAKDDYGIDSFVAMQ 1612 Query: 181 GAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT 240 G EAI+ LL +DL Q + LR EL SE +RKK+ KR++++E F++SGN+PEWMILT Sbjct: 1613 GVEAIRELLTCLDLHQIRKDLRLELESVASEIRRKKIIKRLRIIENFIKSGNRPEWMILT 1672 Query: 241 VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ 300 +P+LPPDLRPLV L+ GR A SDLN YR +INRNNRL++LL L P+I++RNEKRMLQ Sbjct: 1673 TIPILPPDLRPLVSLESGRPAVSDLNHHYRTIINRNNRLRKLLSLNPPEIMIRNEKRMLQ 1732 Query: 301 EAVDALLDNGRRGRAITGSNKRPLK-SLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP 359 EAVD+L DN RR + K S++DM+KGKQGRFRQNLLGKRVDYSGRSVI VGP Sbjct: 1733 EAVDSLFDNSRRNALTNKAGAIGYKKSISDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP 1792 Query: 360 YLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREH 419 L+L+QCGLPK+MALELFKPF+Y KL+L G+A TIK A K++ E+ VWD+L+EVI+EH Sbjct: 1793 ALKLNQCGLPKRMALELFKPFVYSKLKLYGMAPTIKFASKLIRAEKPEVWDMLEEVIKEH 1852 Query: 420 PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLE 479 PVLLNRAPTLHRLGIQAFEP+LIEGKAIQLHPLVC A+NADFDGDQMAVHVP++LEAQLE Sbjct: 1853 PVLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCTAFNADFDGDQMAVHVPISLEAQLE 1912 Query: 480 ARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKG--EGMVLTGPKEAERLY 537 AR LMMSTNN+LSP+NG PIIVPS+D++LG+YY+T K + L E E Sbjct: 1913 ARVLMMSTNNVLSPSNGRPIIVPSKDIILGIYYLTLQEQTDKEGDDLPFLGTFGEVEHSL 1972 Query: 538 RSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPK--GLPYSIVNQA 595 G +H+ +K RI + N E TT GR ILW I PK L + +VNQ Sbjct: 1973 SDGTLHIHSSIKYRI----EYTNSEGETCYKTIRTTPGRLILWQIFPKHENLNFDLVNQV 2028 Query: 596 LGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIIS 655 L K ++ +++ YR G TV F+D++M GF YA SG S D+VIPE K E + Sbjct: 2029 LTVKEVTSIVDLIYRNCGQSATVEFSDRLMVLGFEYATFSGISFSRCDLVIPETKAEHVD 2088 Query: 656 EAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEK 715 A E+ + Q+Q GL+T ERYNKVID W+ D ++ M+ ++ ++ Sbjct: 2089 HARGEIKKFSMQYQDGLITRSERYNKVIDEWSKCTDMIANDMLKSIS---------VYDR 2139 Query: 716 QVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFIS 775 +NS+YMM +SGARGS +Q++QLAGMRGLM KP G IIETPI +NFREGLNV +YF S Sbjct: 2140 NSKYNSVYMMVNSGARGSTSQMKQLAGMRGLMTKPSGEIIETPIISNFREGLNVFEYFNS 2199 Query: 776 THGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPL 835 THGARKGLADTALKTANSGYLTRRLVDV+Q+ +VT+ DC T G+++ +EGG + L Sbjct: 2200 THGARKGLADTALKTANSGYLTRRLVDVSQNCIVTKHDCKTKNGLVVRATVEGGTIVASL 2259 Query: 836 RDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVC 895 VLGR A D+ P T ++LV L+ E + +DAVK+RS ++C+ GVC Sbjct: 2260 ESVVLGRTAANDIYNPVTKELLVKAGELIDEDKVKQINIAGLDAVKIRSPLTCEVSPGVC 2319 Query: 896 AHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNK 955 + CYGRDLA G I++ GEA+GVIAAQS+GEPGTQLTMRTFHIGG +R S+I Sbjct: 2320 SLCYGRDLATGKIVSIGEAVGVIAAQSVGEPGTQLTMRTFHIGGVMTRGVESSNIIASIN 2379 Query: 956 GSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGE 1015 IKLSN +++ +G + SR+ E+ LID G K + +PYGA L +G+ V G+ Sbjct: 2380 AKIKLSNSNIIIDKNGDKIAISRSCEVVLIDSLGSEKLRHSIPYGAKLCVDEGKSVKIGD 2439 Query: 1016 TVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLR 1075 +A WDP+T+P+ITE +G V + D+ DG +IT DE TG+SS VV D +GG +LR Sbjct: 2440 KIAEWDPYTLPIITEKTGTVLYQDLKDGVSITEVMDESTGISSKVVKDWKLY-SGGANLR 2498 Query: 1076 PALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDIT 1135 P + ++D G + + + + A YF+P A++ ++DG ++ +GD + R P+ES T+DIT Sbjct: 2499 PRIVLLDDNGKVMTLA-SGIEACYFIPIGAVLNVQDGQKVHAGDVITRTPRESVKTRDIT 2557 Query: 1136 GGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITP--VDGSDPYEEMIPKW 1193 GGLPRV +LFEARRP+E AI++EI G V F ++ + +R V+ + P E ++ + Sbjct: 2558 GGLPRVIELFEARRPREHAIVSEIDGHVVFSEKDRRGKRSVLIKPLNEQISPIEYLVSRS 2617 Query: 1194 RQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHI 1253 + + V EG+ V +GD++ DG HDILR+ G+ A+ Y+++E+Q VYRLQGV+I++KH+ Sbjct: 2618 KHVIVNEGDFVRKGDLLMDGDPDLHDILRVLGLEALAHYMISEIQQVYRLQGVRIDNKHL 2677 Query: 1254 EVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKAS 1313 EVI++QML+K I + G + +L GE ++ V N + +GK A Y L GIT+AS Sbjct: 2678 EVILKQMLQKVEITDPGDTMYLVGESIDKLEVDKGNDVMSNSGKRPACYLPILQGITRAS 2737 Query: 1314 LATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMR 1371 L T+SFISAASFQETT+VLTEAA GK D L GLKENVIVGRLIPAGTG + R Sbjct: 2738 LETKSFISAASFQETTKVLTEAAFCGKEDPLSGLKENVIVGRLIPAGTGLIMSKVRAL 2795 >UniRef50_D2QMP3 DNA-directed RNA polymerase, beta' subunit n=4 Tax=Bacteria RepID=D2QMP3_9SPHI Length = 1449 Score = 1267 bits (3279), Expect = 0.0, Method: Composition-based stats. Identities = 693/1449 (47%), Positives = 961/1449 (66%), Gaps = 97/1449 (6%) Query: 5 LKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGP 64 + F K + +F ++ I+LASP+ I S+GEV +PETINYRT+KPE GLFC RIFGP Sbjct: 1 MSFKKNKKLNSDFASVTISLASPESILESSYGEVTQPETINYRTYKPEMGGLFCERIFGP 60 Query: 65 VKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRI 124 VKD+EC CGKYKR++++G+IC++CGVEVT+ KVRRERMGHIEL P AHIW+ +SLP++I Sbjct: 61 VKDWECHCGKYKRIRYKGIICDRCGVEVTEKKVRRERMGHIELVVPVAHIWYFRSLPNKI 120 Query: 125 GLLLDMPLRDIERVLYFESYVVIEGGMTN---LERQQILTEEQYLDALEEFG-------- 173 G LL + + +++V+Y+E YVV++ G+ + + LTE++YLD +++ Sbjct: 121 GYLLGLSTKKLDQVIYYERYVVVQPGVKAEDGINQLDFLTEDEYLDIIDKLPSSNQHLDD 180 Query: 174 ---DEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQS 230 ++F AKMGAEA++ LL ++L++ LR S+ ++ + KR+K++EAF ++ Sbjct: 181 KDPNKFIAKMGAEALEMLLSRVELDELSYSLRHAAATDTSQQRKAEALKRLKVVEAFREA 240 Query: 231 G----NKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLA 286 N+PEWM++ ++PV+PP+LRPLVPLDGGRFATSDLNDLYRRVI RNNRLKRL+++ Sbjct: 241 NGRIENRPEWMVIKMVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIK 300 Query: 287 APDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKR 346 AP++I+RNEKRMLQEAVD+L DN R+ A+ R LKSL+DM+KGKQGRFRQNLLGKR Sbjct: 301 APEVILRNEKRMLQEAVDSLFDNSRKVNAVRSEGNRALKSLSDMLKGKQGRFRQNLLGKR 360 Query: 347 VDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEA 406 VDYSGRSVI VGP L+LH+CGLPK MA ELFKPF+ KL RG+ T+K+AKK+V+R++ Sbjct: 361 VDYSGRSVIVVGPELKLHECGLPKDMAAELFKPFVIRKLIERGIVKTVKSAKKIVDRKDP 420 Query: 407 VVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQM 466 V+WDIL+ V++ HPVLLNRAPTLHRLGIQAF+P LIEGKAIQLHPLVC A+NADFDGDQM Sbjct: 421 VIWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDGDQM 480 Query: 467 AVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNA-----K 521 AVHVPL EA LEA LM++++NIL+PANG PI VPSQD+VLGLYY+T+ + Sbjct: 481 AVHVPLGQEAVLEASLLMLASHNILNPANGAPITVPSQDMVLGLYYVTKGRKSTPEYPIP 540 Query: 522 GEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWM 581 GEGM G +E G S HA +K +D NG+LV K DT GR + Sbjct: 541 GEGMTFYGTEEVVIGINEGKISKHANIK--CRVKVRDENGQLVYKVI--DTVAGRLLFNQ 596 Query: 582 IVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGI 641 VP+ + +N+ L KK + +++ ++I G T F D+I GF A R G S+G+ Sbjct: 597 AVPEEV--GYINELLTKKKLQQIIALIFKISGGARTAQFLDEIKELGFQMAFRGGLSIGL 654 Query: 642 DDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNL 701 D++IPE K ++ EA+AEV + + + GL+T ERYN+VIDIW N R+++ +M L Sbjct: 655 SDVMIPEAKQGLVEEAKAEVQAVWDNYLMGLITENERYNQVIDIWTRVNSRLTETLMKQL 714 Query: 702 QTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPD-------GSI 754 + + Q FNSIYMM SGARGS QIRQL GMRGLMAKP G I Sbjct: 715 EAD-----------QGGFNSIYMMMHSGARGSREQIRQLGGMRGLMAKPQKNLQGSVGEI 763 Query: 755 IETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDC 814 IE PI +NF+EGL+VL+YFISTHGARKGLADTALKTA++GYLTRRL DVAQD++++EDDC Sbjct: 764 IENPILSNFKEGLDVLEYFISTHGARKGLADTALKTADAGYLTRRLHDVAQDVIISEDDC 823 Query: 815 GTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEE 874 GT G+ ++ + + D+ EPL +R+LGR T D+ P T +++V L+ E+ ++E Sbjct: 824 GTLRGLQVSALKDNEDIVEPLSERILGRTTVHDIYDPLTKELIVASGELVTEEVAAHIDE 883 Query: 875 NSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRT 934 S++ V++RSV++C++ GVCA CYGR+LA G +++ GEA+GVIA+QSIGEPGTQLT+RT Sbjct: 884 TSIETVEIRSVLTCESRQGVCAKCYGRNLASGRMVDIGEAVGVIASQSIGEPGTQLTLRT 943 Query: 935 FHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSG----KLVITSRNTELKLIDEFGR 990 FH+GG AS A ++SI+ K G I+ +++V + + ++ R+ E+++++ R Sbjct: 944 FHVGGTASNIAVDASIKAKFDGLIEFEEMRTVQSEDNEGNAQTIVMGRSGEVRIVNPNDR 1003 Query: 991 T--KESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITR 1048 + S VPYGA L DG+ V G+ + WDP+ +++E++G + F + DG T Sbjct: 1004 SVVLISNNVPYGAFLRVKDGDMVKKGDDICAWDPYNAVILSELTGTLNFDAIEDGITYRE 1063 Query: 1049 QTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQ 1108 + DE TG V+++S ++ + + G + Y LP + + Sbjct: 1064 EFDEQTGFQEKVIIESRDKAKNPAIIVQGTTTLTLH--LPDNDGGPLQKSYNLPVGSRLV 1121 Query: 1109 LEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKE 1168 +++G +I +G LA+IP+ G T+DITGGLPRV +LFEAR P PA+++EI G+V++G Sbjct: 1122 VKEGQKIKAGQPLAKIPRNVGKTRDITGGLPRVTELFEARNPSNPAVVSEIDGVVTYGAI 1181 Query: 1169 TKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHA 1228 +G R + I DG + ++P + + V + + V G +SDG P DIL ++G A Sbjct: 1182 KRGNREIFIESRDG-TKKKYLVPLSKFILVQDNDFVRAGAPLSDGAITPSDILAIKGPTA 1240 Query: 1229 VTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIA 1288 V Y+VNE+Q+VYRLQGVKINDKHIE IVRQM++K I+++G ++FLEG+ V+ + Sbjct: 1241 VQEYLVNEIQEVYRLQGVKINDKHIEAIVRQMMQKVEIIDSGDTNFLEGQVVDKWAFREE 1300 Query: 1289 NRELEANGKV-----------------------------------------GATYSRDLL 1307 N ++ V A L+ Sbjct: 1301 NDKVLDAKVVMDAGDSPNVKPGQIVTSRQLRDENSSLKRRDQALVTVRDAMAAVSQPTLM 1360 Query: 1308 GITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQ 1367 GIT++SL T+SFISAASFQETT+VL+EA++ GKRD L GLKENVIVG LIPAGTG +Q Sbjct: 1361 GITQSSLGTDSFISAASFQETTKVLSEASIRGKRDVLDGLKENVIVGHLIPAGTGLRRYQ 1420 Query: 1368 DRMRRRAAG 1376 + Sbjct: 1421 SAIVGSKEE 1429 >UniRef50_B2KEN0 DNA-directed RNA polymerase subunit beta' n=1 Tax=Elusimicrobium minutum Pei191 RepID=RPOC_ELUMP Length = 1385 Score = 1267 bits (3278), Expect = 0.0, Method: Composition-based stats. Identities = 718/1392 (51%), Positives = 954/1392 (68%), Gaps = 49/1392 (3%) Query: 1 MKDLLKFLKAQTKTE--EFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFC 58 M + K K +FDAIK+ +ASP+ I +WS GEVKKPETINYRT KPERDGLFC Sbjct: 1 MSEKTKKTKRLDDLNFFDFDAIKLGIASPEQIMAWSHGEVKKPETINYRTLKPERDGLFC 60 Query: 59 ARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLK 118 RIFGP KDYEC CGKY+ +K++G+ C++CGVE+T+ KVRRERMGH+ELA P AH+WFL+ Sbjct: 61 ERIFGPTKDYECSCGKYRWVKYKGMQCDRCGVEITEAKVRRERMGHLELAVPVAHVWFLR 120 Query: 119 SLPSRIGLLLDMPLRDIERVLYFESYVVIEG------GMTNLERQQILTEEQYLDALEEF 172 PSRIG++LDM + D+ERV+Y+ SYVV+E G T+ ++ ++LT+ Q +A ++ Sbjct: 121 KNPSRIGIMLDMRITDLERVVYYASYVVVEDCIDSVTGRTDYKKGELLTDVQVREARKKH 180 Query: 173 GDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGN 232 G +GA A++ LL +D ++E L +L ET SE +R KL +RIK +E F SGN Sbjct: 181 GSRLKVDIGAPAVKKLLSDIDFDKEIPTLHVQLAETQSELERTKLIRRIKTMEEFKASGN 240 Query: 233 KPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIV 292 +PEWMIL+VLPV+PPDLRPLVPLDGGRFA SDLNDLYRR+INRNNRLK + L AP++++ Sbjct: 241 RPEWMILSVLPVIPPDLRPLVPLDGGRFAASDLNDLYRRIINRNNRLKHIESLRAPEVMI 300 Query: 293 RNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGR 352 NEKR+LQEAVDAL++NG RG+ G+ RPLKSL+D+IKGK GRFRQNLLGKRVDYSGR Sbjct: 301 YNEKRLLQEAVDALIENGARGKFFIGAGGRPLKSLSDVIKGKHGRFRQNLLGKRVDYSGR 360 Query: 353 SVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDIL 412 SVI VGP L+LHQCGLPK MALELFKPFI G+L + T KAAKKM+ER +WDIL Sbjct: 361 SVIVVGPSLKLHQCGLPKLMALELFKPFIIGELMKKEGVTL-KAAKKMLERVRPEIWDIL 419 Query: 413 DEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPL 472 ++V + HPV+LNRAPTLHRLGIQAFEPVLIEGKAIQLHPL CAA+NADFDGDQMAVHVPL Sbjct: 420 EQVTKNHPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLTCAAFNADFDGDQMAVHVPL 479 Query: 473 TLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKE 532 +LEAQLEAR LM++TNNILSPA+G PI PS D+V+G+ ++T+ +N GEG V +E Sbjct: 480 SLEAQLEARTLMLATNNILSPASGRPIAAPSHDIVMGISFLTKVKLNDFGEGAVFGSMEE 539 Query: 533 AERLYRSGLASLHARVKVR----ITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLP 588 A Y G SLHAR+KVR I E + T TTVG+ I +P+G P Sbjct: 540 ALMAYAYGKVSLHARIKVRGITAIKEDGMNEKDLKNVNTWKDYTTVGKIIFNNNLPEGWP 599 Query: 589 YSIVNQALGKKAISKMLNTCYR--ILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVI 646 VN A+GKK ++ +++ CY+ G TV D+IM G+ YA RSG S+ I DM++ Sbjct: 600 --YVNGAVGKKELAAIIDECYKSKKYGKYETVQLLDRIMKLGYNYATRSGLSISIADMIV 657 Query: 647 PEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETV 706 P K + I A+ + EIQ Q ++G++T GERYNKVIDIW D V+ ++ Sbjct: 658 PAAKQKYIDAAKKRIKEIQGQAEAGIITEGERYNKVIDIWTRVTDDVAVEQFKEMKKFEE 717 Query: 707 INRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPD-------GSIIETPI 759 G+ ++ FNS+++MADSGARGS Q+RQLAGMRGLMAKP G IIE+PI Sbjct: 718 APYSGEGQR---FNSVFLMADSGARGSRQQVRQLAGMRGLMAKPQKKLTGGQGEIIESPI 774 Query: 760 TANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEG 819 T+NFREGL+VL+YFISTHG RKGL+DTALKTA +GYLTRRL+DVA +LVV E+DCGT G Sbjct: 775 TSNFREGLSVLEYFISTHGGRKGLSDTALKTAEAGYLTRRLIDVAHNLVVMEEDCGTTNG 834 Query: 820 IMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTA-------DILVPRNTLLHEQWCDLL 872 ++++ ++ G +V EP+ +R+LGR + EDV+ ++ + + L+ Sbjct: 835 VVVSSLMSGEEVVEPIEERILGRTSLEDVIVKIKKADGKEEEKTIIKEGDSITLEQSKLV 894 Query: 873 EENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTM 932 ++ V +++RSV++C++ GVC CYG L G+I N G+++G+IAAQSIGEPGTQLT+ Sbjct: 895 KKYGVQNLRIRSVLTCESKNGVCGKCYGVSLVSGNISNVGDSVGIIAAQSIGEPGTQLTL 954 Query: 933 RTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTK 992 RTFHIGGAASR ++S + G + ++K + N + SRN + + G K Sbjct: 955 RTFHIGGAASRMLSQSQAVAELGGKVTFKDIKVITNRFDNKICISRNGAIFVEAANGTIK 1014 Query: 993 ESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDE 1052 E YK+ YGA L D V G +A WDPH++PV++E G R TD+ +G T+ + ++ Sbjct: 1015 E-YKIQYGATLHIADKVTVEKGTLMAEWDPHSIPVLSETEGTARLTDVSEGITLQEERNK 1073 Query: 1053 LTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDG 1112 +TG+ + S P + I G V +P LP I+ +E+G Sbjct: 1074 VTGVIERKITASRMGKKN-----PRIVIEGKGGKKVSLP---------LPVDTILLVENG 1119 Query: 1113 VQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGK 1172 + +GD LA+I + SGGTKDIT GLPR+A+LFEAR+P+ AI++E +G+VS KG Sbjct: 1120 EDVLAGDILAKIAKASGGTKDITSGLPRIAELFEARKPRNAAIMSEFAGVVSLETSPKGL 1179 Query: 1173 RRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRY 1232 +V+ + + +P+ + L V+EG+ V G+ ++DG PHD+LR++G+ V + Sbjct: 1180 VEIVVRSEETGQVKQYAVPQGKHLVVYEGDHVGVGEALTDGAIDPHDVLRVKGIKEVQEF 1239 Query: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANREL 1292 ++N +Q+VYRLQGV IND+HIEVIVRQML IV+AG + L+GE V + + N + Sbjct: 1240 LLNAIQEVYRLQGVTINDRHIEVIVRQMLGNVKIVDAGDTPLLKGEIVSRATLLKHNAQA 1299 Query: 1293 EANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVI 1352 E GK A LLGI+KASLA++SFISAASFQETT+VLT+AA+ G+ D L+GLKENVI Sbjct: 1300 EKEGKKIAVGDPILLGISKASLASDSFISAASFQETTKVLTDAAITGQVDTLQGLKENVI 1359 Query: 1353 VGRLIPAGTGYA 1364 VG LIPAGTG + Sbjct: 1360 VGHLIPAGTGIS 1371 >UniRef50_Q3KM48 DNA-directed RNA polymerase subunit beta' n=63 Tax=Bacteria RepID=RPOC_CHLTA Length = 1396 Score = 1259 bits (3258), Expect = 0.0, Method: Composition-based stats. Identities = 685/1402 (48%), Positives = 936/1402 (66%), Gaps = 60/1402 (4%) Query: 17 FDAIKIALASPDMIR-SWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKY 75 FD ++I +AS IR WS GE+KKPETINYRTFKPE+ GLFC +IFGP KD+EC CGKY Sbjct: 18 FDKLEIGIASDVTIRDKWSCGEIKKPETINYRTFKPEKGGLFCEKIFGPTKDWECYCGKY 77 Query: 76 KRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDI 135 K++KH+G++C++CGVEVT +KVRRERM HIELA P HIWF K+ PSRIG +L M D+ Sbjct: 78 KKIKHKGIVCDRCGVEVTLSKVRRERMAHIELAVPIVHIWFFKTTPSRIGNVLGMTASDL 137 Query: 136 ERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDE-FDAKMGAEAIQALLKSMDL 194 ERV+Y+E YVVI+ G T+L ++Q+L + +Y + +E++G + F AKMG EA+ LLKS DL Sbjct: 138 ERVIYYEEYVVIDPGNTDLVKKQLLNDAKYREVVEKWGKDAFVAKMGGEAVYDLLKSEDL 197 Query: 195 EQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVP 254 E +L+E L +T S+ R KL KR+K++E FV S N+PEWM+L +PV+PPDLRPLVP Sbjct: 198 ESLLGELKERLRKTKSQQARMKLAKRLKIVEGFVSSSNRPEWMVLKNIPVVPPDLRPLVP 257 Query: 255 LDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGR 314 LDGGRFATSDLNDLYRRVINRNNRLK +L L P++IVRNEKRMLQEAVDAL DNGR G Sbjct: 258 LDGGRFATSDLNDLYRRVINRNNRLKAILRLKTPEVIVRNEKRMLQEAVDALFDNGRHGH 317 Query: 315 AITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMAL 374 + G+ RPLKSL++M+KGK GRFRQNLLGKRVDYSGRSVI VGP L+ +QCGLPK+MAL Sbjct: 318 PVMGAGNRPLKSLSEMLKGKNGRFRQNLLGKRVDYSGRSVIIVGPELKFNQCGLPKEMAL 377 Query: 375 ELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGI 434 ELF+PFI +L+ +G TI++AKKM++R VWD+L+E+I+ HPVLLNRAPTLHRLGI Sbjct: 378 ELFEPFIIKRLKDQGSVYTIRSAKKMIQRGAPEVWDVLEEIIKGHPVLLNRAPTLHRLGI 437 Query: 435 QAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPA 494 QAFEPVLIEGKAI++HPLVCAA+NADFDGDQMAVHVPL++EAQLEA+ LMM+ +NI P+ Sbjct: 438 QAFEPVLIEGKAIRVHPLVCAAFNADFDGDQMAVHVPLSIEAQLEAKVLMMAPDNIFLPS 497 Query: 495 NGEPIIVPSQDVVLGLYYMTRDCVNAKGEG----MVLTGPKEAERLYRSGLASLHARVKV 550 +G+P+ PS+D+ LG+YY+ D E E R +G +K Sbjct: 498 SGKPVATPSKDMTLGIYYLMADPTYFPEEHGGKTKAFKDEVEVLRALNAGGF----ILKD 553 Query: 551 RITEYEKDANGELVA---------KTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAI 601 I +D G + + +TT GR IVPK L N ++ K I Sbjct: 554 EICGSRRDETGRGIHIHEKIKVRIDGQIIETTPGRVFFNTIVPKEL--GFQNYSMPSKRI 611 Query: 602 SKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEV 661 S+++ CY+ +GL+ TV F D + GF + ++ S+G+ D+ IPE K EI+ +A +V Sbjct: 612 SELILQCYKKVGLEATVRFLDDLKELGFVQSTKAAISMGLKDVKIPEIKKEILKDAYDKV 671 Query: 662 AEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNS 721 A +++Q++ G++T GER++K I IW +D +S A+ ++ +T N Sbjct: 672 AVVKKQYEDGIITDGERHSKTISIWTEVSDLLSNALYSEIKKQTNSK----------HNP 721 Query: 722 IYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARK 781 +++M DSGARG+ +Q++QL +RGLMAKP+G+IIE+PIT+NFREGL VL+Y IS+HGARK Sbjct: 722 LFLMIDSGARGNKSQLKQLGALRGLMAKPNGAIIESPITSNFREGLTVLEYSISSHGARK 781 Query: 782 GLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLG 841 GLADTALKTA+SGYLTRRLVDVAQD+++TE DCGT I ++ + +G + PL+DRV G Sbjct: 782 GLADTALKTADSGYLTRRLVDVAQDVIITERDCGTLNHIEVSTIRQGSEELLPLKDRVYG 841 Query: 842 RVTAEDVLKPGTA-DILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYG 900 R +E++ +PG ++L +L + +++ +++VK+RS ++C++ GVCA CYG Sbjct: 842 RTVSENIYQPGDKSNVLAYAGDVLTSAQAEAIDDAGIESVKIRSTLTCESRRGVCAKCYG 901 Query: 901 RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL 960 +LA G +I GEA+G+IAAQSIGEPGTQLTMRTFH+GG A+ ++ I + G + Sbjct: 902 LNLANGRLIGLGEAVGIIAAQSIGEPGTQLTMRTFHLGGIAATSSTP-EIVAECDGILVY 960 Query: 961 SNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYK---------------VPYGAVLAK 1005 +++ VV+ G ++ ++ L L+ + GR+ YK V GA + Sbjct: 961 LDLRVVVDQEGNNLVLNKMGALHLVQDEGRSLSEYKKLLSTKSIESLATFPVELGAKILV 1020 Query: 1006 GDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSA 1065 DG VA G+ +A + H +P+I + GFV + D+++G + + T++ TGL L+V Sbjct: 1021 NDGAAVAAGQRIAEVELHNIPIICDKPGFVHYEDLVEGVSTEKVTNKNTGLVELIVKQHR 1080 Query: 1066 ERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIP 1125 + + + G Y +P AI+ +E+G +I+ G LAR+P Sbjct: 1081 GELHPQIAIYADANMKELVG------------TYAIPSGAIISVEEGQRIAPGMLLARLP 1128 Query: 1126 QESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDP 1185 + + TKDITGGLPRVA+L EAR+P++ A +A+I G+V F K KR LV+ Sbjct: 1129 RGAIKTKDITGGLPRVAELVEARKPEDAADIAKIDGVVDFKGIQKNKRILVVRDEITGME 1188 Query: 1186 YEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQG 1245 E +I + L V G+ V +G ++DG PH+IL + GV + +Y+VNEVQ+VYRLQG Sbjct: 1189 EEHLISLTKHLIVQRGDSVIKGQQLTDGLVVPHEILEICGVRELQKYLVNEVQEVYRLQG 1248 Query: 1246 VKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRD 1305 V INDKH+E+IVRQML+K I + G + L GE V+ NR E +G A Sbjct: 1249 VDINDKHVEIIVRQMLQKVRITDPGDTTLLFGEDVDKKEFYEENRRTEEDGGKPAQAVPV 1308 Query: 1306 LLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAY 1365 LLGITKASL TESFISAASFQ+TTRVLT+AA + K D L G KENVI+G +IP GTG+ Sbjct: 1309 LLGITKASLGTESFISAASFQDTTRVLTDAACSSKTDYLLGFKENVIMGHMIPGGTGFDT 1368 Query: 1366 HQDRMRRRAAGEAPAAPQVTAE 1387 H+ + + +E Sbjct: 1369 HKRIKQHLEKEQEDLVFDFDSE 1390 >UniRef50_B0SAG0 DNA-directed RNA polymerase subunit beta' n=33 Tax=Bacteria RepID=RPOC_LEPBA Length = 1433 Score = 1254 bits (3244), Expect = 0.0, Method: Composition-based stats. Identities = 681/1414 (48%), Positives = 920/1414 (65%), Gaps = 101/1414 (7%) Query: 13 KTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLC 72 F++I I LASP+ I+ WSFGEVKKPETINYRT KPERDGLFC +IFG KD+EC C Sbjct: 3 NYNSFESITIRLASPERIKEWSFGEVKKPETINYRTLKPERDGLFCEKIFGTTKDWECYC 62 Query: 73 GKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPL 132 GK+K ++++GV+C+KCGVEVT +KVRRERMGHIELA+P +HIW+ +S+PSR+GLLLDM + Sbjct: 63 GKFKSIRYKGVVCDKCGVEVTHSKVRRERMGHIELAAPVSHIWYYRSVPSRMGLLLDMTI 122 Query: 133 RDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSM 192 ++ VLYFE YV+I+ + R +++ E++Y + L+E+GD+F A +G +AI+ LL + Sbjct: 123 NQLKSVLYFEKYVIIDPADSGRNRGELIDEDEYHNYLDEYGDKFIAGIGGDAIKELLARI 182 Query: 193 DLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPL 252 D++ E +R+++ + N + K++ KR+++LEAF SGN+PEWM+L V+PV+PP+LRP+ Sbjct: 183 DVDAEARVIRQKIQDKNKISD-KRIFKRLEVLEAFRDSGNRPEWMVLDVVPVIPPELRPM 241 Query: 253 VPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRR 312 V L+GGRFATSDLNDLYRRVINRNNRLKRLL L AP+IIVRNEKRMLQEAV AL DN RR Sbjct: 242 VQLEGGRFATSDLNDLYRRVINRNNRLKRLLALKAPEIIVRNEKRMLQEAVGALFDNSRR 301 Query: 313 GRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKM 372 R + G RPLKS++DM+KGKQGRFRQNLLGKRVDYSGRSVI VGP L+ HQ GLPKKM Sbjct: 302 KRTVKGKGNRPLKSISDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKYHQMGLPKKM 361 Query: 373 ALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRL 432 ALELFKPFI +L LA IK+AKK +E E+ V+D+L+ V++EHPVLLNRAPTLHRL Sbjct: 362 ALELFKPFIMKRLVDLELAPNIKSAKKKIEAEDKEVFDVLETVVKEHPVLLNRAPTLHRL 421 Query: 433 GIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILS 492 GIQAF PVL+EGKAI+LHPLVC A+NADFDGDQMA+HVPL +AQLE LM+S +NIL+ Sbjct: 422 GIQAFLPVLVEGKAIKLHPLVCHAFNADFDGDQMAIHVPLAPKAQLETWMLMLSPHNILN 481 Query: 493 PANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRI 552 PANG+PI P+QD+VLG+YY+T + +AKGEG TG +E + + +++ V Sbjct: 482 PANGQPICGPTQDIVLGIYYLTSEVKDAKGEGKFFTGLEEVMYAIETKTVEIRSKISV-- 539 Query: 553 TEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRIL 612 + + + +TT GR I ++PKG +N+ LG K +K++ Y Sbjct: 540 -----------LHEGKIIETTPGRLIFNQVMPKGY--VYINRTLGDKETNKIIADVYEKF 586 Query: 613 GLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGL 672 G TV+ D+I G+ YA ++ IDD+ + +K ++++A EV + +++ G+ Sbjct: 587 GPGITVVMLDEIKRLGYRYATVFAPTISIDDIRVSPQKEGLVNDANKEVEKADMEYRKGI 646 Query: 673 VTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARG 732 +T ER KVI+IW NDR+++ M L+ + FN +Y+MA SGARG Sbjct: 647 ITNEERRKKVIEIWTKTNDRITEGMFKELEKDQAG-----------FNPVYVMAASGARG 695 Query: 733 SAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTAN 792 S QIRQLAGMRGLMAKP G IIE I +NFREGL VL++FISTHGARKGLADTALKTA+ Sbjct: 696 SKQQIRQLAGMRGLMAKPSGEIIELAIRSNFREGLGVLEFFISTHGARKGLADTALKTAD 755 Query: 793 SGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPG 852 +GYLTRRLVD++QD++V+EDDCGT I + V EG +V L DRV GR TAED++ P Sbjct: 756 AGYLTRRLVDISQDVIVSEDDCGTKANITLGIVKEGENVIVSLADRVFGRYTAEDLVDPV 815 Query: 853 TADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKG 912 T ++ P++TL+ +E D +KVRS ++C + G+C CYG D+AR G Sbjct: 816 TEKVVFPKDTLITRALGQQIENLGYDKIKVRSPLTCRSRHGICTKCYGMDMARLVPAEIG 875 Query: 913 EAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGK 972 EA+G IAAQSIG+PGTQLTMRTFH+GGAAS E +V + +K N + V N++G Sbjct: 876 EAVGTIAAQSIGQPGTQLTMRTFHVGGAASATIQEKEHKVPFRSLVKSINGRLVTNANGS 935 Query: 973 LVITSRNTEL--KLIDEFGRTKES------------------------------------ 994 V R T + +LI EF S Sbjct: 936 KVFARRGTIIVNRLIQEFNTESLSSVRIVDGQRLEKGEVFASQVGESIEQRITSDQAGTV 995 Query: 995 ---------------YKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTD 1039 V G +L +G+ V + +A +DP+ ++E +G + + D Sbjct: 996 SLIGTTLRILGDDIVIPVKIGTILKSEEGQIVEENKALAEFDPYNEVAVSETAGTIVWED 1055 Query: 1040 MIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQY 1099 + G+ + R D T L V++ + K IV + G Y Sbjct: 1056 LEIGKNVRRDVDPKTSNIILKVVEQKKDRLVPK------VIVGSDG-------------Y 1096 Query: 1100 FLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEI 1159 +P A++Q ++G ++ GD + +IP + T+DITGGLPRV +LFEARRPK+ LAEI Sbjct: 1097 SVPVDALLQFQNGDKVREGDVIFKIPSVAEKTRDITGGLPRVDELFEARRPKDACTLAEI 1156 Query: 1160 SGIVSFGKETKGKRRLVITPVDG--SDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAP 1217 G + E ++R++ D + + IP +Q+ V +G+ V+RGD + +G P Sbjct: 1157 DGKIEDKGEIVKEKRILYILPDSPEQEKVKVAIPIGKQIRVRQGDFVKRGDQLDEGNFDP 1216 Query: 1218 HDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEG 1277 HDIL ++G A+ Y+V+EVQ+VYRLQGV INDKHIEV+VR MLRK I ++G + F+ Sbjct: 1217 HDILAIKGPSALHEYLVSEVQEVYRLQGVHINDKHIEVVVRSMLRKVIITDSGDTSFVNQ 1276 Query: 1278 EQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAV 1337 +QV+ N +E G A + LLG+TKASL TES+ SAASFQETT+VLT+AA+ Sbjct: 1277 QQVDKFLFDEENDRVEQEGGSPAQGTPVLLGLTKASLNTESYFSAASFQETTKVLTDAAI 1336 Query: 1338 AGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMR 1371 GK D L GLKENVI+G +IPAGTG ++D Sbjct: 1337 KGKTDNLMGLKENVIIGHMIPAGTGMKKYRDIEV 1370 >UniRef50_Q8RHI7 DNA-directed RNA polymerase subunit beta' n=22 Tax=Bacteria RepID=RPOC_FUSNN Length = 1319 Score = 1243 bits (3215), Expect = 0.0, Method: Composition-based stats. Identities = 658/1371 (47%), Positives = 917/1371 (66%), Gaps = 58/1371 (4%) Query: 14 TEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCG 73 F+ I+I LASP+ I WS GEV KPETINYRT PERDGLFC IFGP KD+EC CG Sbjct: 3 IRNFEKIRIKLASPEKILEWSHGEVTKPETINYRTLNPERDGLFCEIIFGPTKDWECSCG 62 Query: 74 KYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLR 133 KYKR++++G++CEKCGVEVT+ KVRRERMGHI LASP +HIW+ K P+++ L++ + + Sbjct: 63 KYKRMRYKGLVCEKCGVEVTRAKVRRERMGHITLASPVSHIWYSKGSPNKMSLIIGISSK 122 Query: 134 DIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMD 193 ++E VLYF Y+V + +E +ILTE++Y + +G++F+A MGA+ I LL ++D Sbjct: 123 ELESVLYFARYIVTSSQESTVEVGKILTEKEYKLLKQLYGNKFEAYMGADGILKLLTAID 182 Query: 194 LEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLV 253 LE+ ++L EL E NS KRKKL KR+K++ F+ SGN+PEWMILT +PV+P +LRP+V Sbjct: 183 LEKLRDELENELAEANSAQKRKKLVKRLKIVRDFIASGNRPEWMILTNVPVIPAELRPMV 242 Query: 254 PLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRG 313 LDGGRFATSDLNDLYRRVINRNNRLK+LL++ AP+I+V+NEKRMLQEAVDAL+DNGRRG Sbjct: 243 QLDGGRFATSDLNDLYRRVINRNNRLKKLLEIRAPEIVVKNEKRMLQEAVDALIDNGRRG 302 Query: 314 RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMA 373 + + N R LKSL+DM+KGKQGRFRQNLLGKRVDYS RSVI VGP L+++QCG+PKKMA Sbjct: 303 KPVVAQNNRELKSLSDMLKGKQGRFRQNLLGKRVDYSARSVIVVGPSLKMNQCGIPKKMA 362 Query: 374 LELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLG 433 LEL+KPFI +L R LA IK AKK+VE + VW ++++VI +HPVLLNRAPTLHRL Sbjct: 363 LELYKPFIMRELVRRELANNIKMAKKLVEESDDKVWAVIEDVIADHPVLLNRAPTLHRLS 422 Query: 434 IQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSP 493 IQAF+PVLIEGKAI+LHPLVC+A+NADFDGDQMAVH+ L+ E+ +EA+ LM + NNI+SP Sbjct: 423 IQAFQPVLIEGKAIRLHPLVCSAFNADFDGDQMAVHLTLSPESMMEAKLLMFAPNNIISP 482 Query: 494 ANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRIT 553 ++GEPI VPSQD+V+G +YMT++ KGEG + + ++ Y++ HA +KVR+ Sbjct: 483 SSGEPIAVPSQDMVMGCFYMTKERPGEKGEGKLFSNIEQVITAYQNDKVGTHALIKVRMN 542 Query: 554 EYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILG 613 L +TT GR + I+P+ + GKK I ++ + Y G Sbjct: 543 -------------GELIETTPGRVLFNEILPEIDRNYH--KTYGKKEIKSLIKSLYEAHG 587 Query: 614 LKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLV 673 T +++ G+ Y +G SVGI+D+ +P KK ++++A+ EVA+I + ++SG + Sbjct: 588 FTETAELINRVKNFGYHYGTFAGVSVGIEDLEVPPKKKSLLNQADKEVAQIDKDYKSGKI 647 Query: 674 TAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGS 733 ERY K I++W+ + V+ AMM NL FN +YMMA SGARG+ Sbjct: 648 INEERYRKTIEVWSRTTEAVTDAMMKNL---------------DEFNPVYMMATSGARGN 692 Query: 734 AAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANS 793 +Q+RQLAGMRG MA G IE PI ANFREGL VL++F+S+HGARKGLADTAL+TA+S Sbjct: 693 VSQMRQLAGMRGNMADTQGRTIEVPIKANFREGLTVLEFFMSSHGARKGLADTALRTADS 752 Query: 794 GYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVI-EGGDVKEPLRDRVLGRVTAEDVLKPG 852 GYLTRRLVD++ +++V E+DC THEGI + ++ G + E L +R+ GRV AED++ Sbjct: 753 GYLTRRLVDISHEVIVNEEDCHTHEGIEVEALVGANGKIIEKLSERINGRVLAEDLVHK- 811 Query: 853 TADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKG 912 + RNT++H+ D +EE + VK+RS ++C + GVC CYG DL+ + I G Sbjct: 812 -GKKIAKRNTMIHKDLLDKIEELGIKKVKIRSPLTCALEKGVCQKCYGMDLSNYNEILLG 870 Query: 913 EAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGK 972 EA+GV+AAQSIGEPGTQLTMRTFH GG A A +S + +N G + ++K++ +G+ Sbjct: 871 EAVGVVAAQSIGEPGTQLTMRTFHTGGVAGAATVVNSKKAENDGEVSFRDIKTI-EINGE 929 Query: 973 LVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVS 1032 V+ S+ ++ + D ++V G+V+ +G++V G+ + +DP+ +P+I+ Sbjct: 930 DVVVSQGGKIIIADNE------HEVDSGSVIRVTEGQKVKEGDVLVTFDPYHIPIISSHD 983 Query: 1033 GFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPG 1092 G V++ T DE + +V+ S + + +L Sbjct: 984 GKVQYR----HFTPKNIRDEKYDVHEYLVVRSVDSVDSEPRVH------------ILDKK 1027 Query: 1093 TDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKE 1152 + A Y +P A + + DG ++ GD +A+I + GTKDITGGLPRV +LFEAR PK Sbjct: 1028 NEKLATYNIPYGAYMMVRDGAKVKKGDIIAKIIKLGEGTKDITGGLPRVQELFEARNPKG 1087 Query: 1153 PAILAEISGIVSFGKETKGKRRLVITP--VDGSDPYEEMIPKWRQLNVFEGERVERGDVI 1210 A LAEI G + K + R+V + + E +IP +L V +G +++ GD I Sbjct: 1088 KATLAEIDGRIEILTTKKKQMRVVNVRSLENPEEFKEYLIPMGERLVVTDGLKIKAGDKI 1147 Query: 1211 SDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAG 1270 ++G +P+D+L ++G+ A ++I+ VQ VYR QGV +NDKHIE+IV+QM RK I+++G Sbjct: 1148 TEGAISPYDVLNIKGLVAAEQFILESVQQVYRDQGVTVNDKHIEIIVKQMFRKVRIIDSG 1207 Query: 1271 SSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTR 1330 +S FLE E +E V + N++LE GK Y + GITKA++ T SFISAASFQETT+ Sbjct: 1208 ASLFLEDEVIEKRVVDLENKKLEEQGKALIKYEPVIQGITKAAVNTGSFISAASFQETTK 1267 Query: 1331 VLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAA 1381 VL+ AA+ GK D L GLKENVI+G+ IPAGTG+ ++ R + P Sbjct: 1268 VLSNAAIEGKVDYLEGLKENVILGKKIPAGTGFNKYKSIKVRYNTDDKPEE 1318 >UniRef50_C9RQN4 DNA-directed RNA polymerase n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQN4_FIBSS Length = 1478 Score = 1234 bits (3193), Expect = 0.0, Method: Composition-based stats. Identities = 695/1507 (46%), Positives = 935/1507 (62%), Gaps = 143/1507 (9%) Query: 10 AQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYE 69 A+ TE+F I I LASPD+IR WS+GEV KPETINYR+FKPE+DGLFC +IFGPVK++E Sbjct: 2 AEEMTEQFGDISIHLASPDLIRYWSYGEVTKPETINYRSFKPEKDGLFCEKIFGPVKNWE 61 Query: 70 CLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTA----------------- 112 C CGK+KR++++GVIC++CGVEVT +KVRRERMGHIELA P Sbjct: 62 CNCGKFKRIRYKGVICDRCGVEVTHSKVRRERMGHIELAIPLTHTWFVRNQPCVIGALLN 121 Query: 113 -------HIWFL------------------------------------KSLPSRIGLLLD 129 HI + K S I LLD Sbjct: 122 LNTKDLDHIIYYEKYVVIDPGTTDLEPNSLIDEAQYQDLVAEGREFEAKMGASAIKQLLD 181 Query: 130 -MPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGA------ 182 + L + L ++ + + ++ + E +E F + A Sbjct: 182 RVDLTKLSEELRLQATSKSKTKQDDAVKRLKVVEAFKKSQMESFRSYYKNPDPARDASKA 241 Query: 183 --EAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT 240 + + + ++ E + L + E + K + N+P WMIL Sbjct: 242 WLKGLAEAVAEFKVDYEAKHSDFVLADAYEEFRHKYPNEA-------RLLANQPSWMILD 294 Query: 241 VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ 300 VLPV+PPDLRPLVPL+GGRFATSDLN+LYRRVINRNNRLK+L+D+ AP++I+ NEKRMLQ Sbjct: 295 VLPVIPPDLRPLVPLEGGRFATSDLNELYRRVINRNNRLKKLIDIRAPNVILCNEKRMLQ 354 Query: 301 EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360 EAVD L D+GRR + RPLKSLA+++KGKQGRFR NLLGKRVDYSGRSVI VGP Sbjct: 355 EAVDQLFDSGRR--TARAGSARPLKSLAELLKGKQGRFRMNLLGKRVDYSGRSVIVVGPE 412 Query: 361 LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP 420 LR+HQCGLPK+MALEL+KPFI +LE G+ T+K+AKK V+ E VWDIL+++I +HP Sbjct: 413 LRMHQCGLPKRMALELYKPFIIQRLEEEGIVYTLKSAKKYVDAERPEVWDILEQIIEDHP 472 Query: 421 VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480 V+LNRAPTLHRLGIQAF P LIEG AI+LHPLVC A+NADFDGDQMA H+PL+ E QLE Sbjct: 473 VMLNRAPTLHRLGIQAFYPKLIEGNAIRLHPLVCTAFNADFDGDQMACHLPLSFETQLEC 532 Query: 481 RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSG 540 R LM+S+NNIL PA+G+PI VP QD+VLGLYY+T+ N KGEGM P EA R Y + Sbjct: 533 RVLMLSSNNILHPASGQPIAVPGQDIVLGLYYLTKPRPNRKGEGMHFYDPAEAVRAYEND 592 Query: 541 LASLHARV--------KVRITEYEKDAN------------------GELVAKTSLKD--- 571 + L+A V K+ + EKD GE + +LK+ Sbjct: 593 VVDLNANVYLKLPAGRKIYMGALEKDCTCIREMADDNGNLEVQVKAGEKIKFLTLKEDNV 652 Query: 572 --TTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGF 629 TTVGR I VP L N+ GKK I+K ++ YR G + TV + D + G+ Sbjct: 653 IKTTVGRIIFNEFVPNAL--GYANETFGKKVIAKSIDDLYRRTGNRVTVDYLDDLKANGY 710 Query: 630 AYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAA 689 +A R+G+SV I +MVIP++K E++ +A +V++I+ ++ G++T GERYN+ ID+W+ Sbjct: 711 KWATRAGSSVAIAEMVIPKEKQEMLDKAAEQVSKIRALYEDGVITDGERYNQTIDVWSKT 770 Query: 690 NDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAK 749 V+ D L + FN +YMMADSGARGS QI+QL+GMRGLM K Sbjct: 771 TSDVAAKQWDLLSHDR-----------DGFNPVYMMADSGARGSREQIKQLSGMRGLMQK 819 Query: 750 P-----DGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVA 804 P +IE PI + FREGLNV++YFIS+HGARKGLADTALKTA++GYLTRRLVDV Sbjct: 820 PIKQLGGQEVIENPIKSCFREGLNVMEYFISSHGARKGLADTALKTADAGYLTRRLVDVG 879 Query: 805 QDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLL 864 QDLV+TE DCGT GI ++ +G D PL +R+LGR +D+ P T +++V L+ Sbjct: 880 QDLVITEPDCGTTNGIEVSAFKDGDDTVIPLEERLLGRAPVDDIKHPVTGEVIVKAGELV 939 Query: 865 HEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIG 924 E+ + ++ +K+RSV++CD+ GVCA CYGR LA G ++ GEA+GV+AAQSIG Sbjct: 940 TERDLPKISATGLEHIKMRSVLTCDSKTGVCAKCYGRMLASGRPVDLGEAVGVLAAQSIG 999 Query: 925 EPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKL 984 EPGTQLT+RTFHIGGA+SR ES + G I+L V++V + G+ V+ SR EL + Sbjct: 1000 EPGTQLTLRTFHIGGASSRLTVESDKKATVDGHIELEQVETV-DHEGQKVVVSRMGELVI 1058 Query: 985 IDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQ 1044 D G K Y++PYGA+L + V GE++ WDP+ P+IT VSG + F+++I+ + Sbjct: 1059 FDTTGINKGRYQIPYGAILHVENNATVKKGESMFEWDPYNSPIITNVSGTIAFSNLIENR 1118 Query: 1045 TITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGK 1104 T + DE+T + + +V+ + G LRP + I D +G V + LP Sbjct: 1119 TYRIERDEMTDVETWIVISDKQH--GKNQLRPVIVINDDRGEKVGH--------FMLPDG 1168 Query: 1105 AIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVS 1164 AI+ + G +++SG +A++P+ +G T+DITGGLPRVA+LFEAR PK A +A + G+V Sbjct: 1169 AILAVHQGDRVTSGQVIAKLPRAAGKTRDITGGLPRVAELFEARVPKNKAFIAPVDGLVK 1228 Query: 1165 FGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLR 1224 +G E + + ++I +DG + + ++P+ L V +G+RV G IS+G PHDIL + Sbjct: 1229 YGNEVRNNQEVIIQQMDG-NEVKVLVPRGIHLAVNDGDRVRAGQKISEGSVDPHDILDVL 1287 Query: 1225 GVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSR 1284 G V R++VNE+Q VYRLQGV I DKHIE IVRQM+RK I + G S+FL GE++ R Sbjct: 1288 GPEDVQRHLVNEIQAVYRLQGVAIADKHIECIVRQMMRKVRITDPGESEFLPGEEISKIR 1347 Query: 1285 VKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDEL 1344 ++ N L A GK A Y LLGITKASLAT+SFISAASFQET ++LT A++ G D L Sbjct: 1348 LRTENERLRALGKDEAKYQPMLLGITKASLATDSFISAASFQETQKILTRASIEGCVDPL 1407 Query: 1345 RGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQVTAEDASASLA----ELLNAG 1400 GLKENVI+GRLIP GTG + ++ A + +V + A ++ + Sbjct: 1408 MGLKENVIMGRLIPCGTGARHLRNVQVIDADADEMEERRVQSAPAENYETGTGIQMQDNE 1467 Query: 1401 LGGSDNE 1407 +G SD E Sbjct: 1468 IGASDEE 1474 >UniRef50_Q3ATP4 DNA-directed RNA polymerase subunit beta' n=12 Tax=Chlorobiaceae RepID=RPOC_CHLCH Length = 1502 Score = 1234 bits (3192), Expect = 0.0, Method: Composition-based stats. Identities = 665/1506 (44%), Positives = 934/1506 (62%), Gaps = 146/1506 (9%) Query: 16 EFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKY 75 +F IK ++ASP+ I + S GEV KPETINYRTFKPERDGL C +IFGP KD+EC CGKY Sbjct: 13 DFSRIKFSIASPESILAHSRGEVLKPETINYRTFKPERDGLMCEKIFGPTKDWECYCGKY 72 Query: 76 KRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDI 135 KR++++G+IC++CGVEVT VRRERMGHI LA P H WF +S+PS+IG LLD+ +++ Sbjct: 73 KRVRYKGIICDRCGVEVTTKSVRRERMGHISLAVPVVHTWFFRSVPSKIGALLDLSTKEL 132 Query: 136 ERVLYFESYVVIEGGMTN----LERQQILTEEQYLDALEEFGD----------EFDAKMG 181 ER++Y+E YVVI G +++ LTEEQY + E+ D +F AKMG Sbjct: 133 ERIIYYEVYVVINPGEPGEKQGIKKLDRLTEEQYFQIITEYEDNQDLDDHDPNKFVAKMG 192 Query: 182 AEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQS----------- 230 EAI LLK++DL++ LR L E+NSE KR KR+K++E+F +S Sbjct: 193 GEAIHMLLKNIDLDETAVHLRTVLRESNSEQKRTDALKRLKVVESFRKSYEPHKKSRKKP 252 Query: 231 ----------------GNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVIN 274 GNKPE+M++ V+PV+PP+LRPLVPL+GGRFATSDLNDLYRRVI Sbjct: 253 NALFAEDDMPEPYVYEGNKPEYMVMEVIPVIPPELRPLVPLEGGRFATSDLNDLYRRVII 312 Query: 275 RNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAI-TGSNKRPLKSLADMIKG 333 RNNRLK+L+D+ AP++I+RNEKRMLQEAVDAL DN R+ A+ TG + RPLKSL+D +KG Sbjct: 313 RNNRLKKLIDIRAPEVILRNEKRMLQEAVDALFDNSRKANAVKTGESNRPLKSLSDALKG 372 Query: 334 KQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATT 393 KQGRFRQNLLGKRVDYSGRSVI VGP L+LH+CGLPK MA+ELF+PF+ +L RG+A + Sbjct: 373 KQGRFRQNLLGKRVDYSGRSVIVVGPELKLHECGLPKSMAIELFQPFVIRRLVDRGIAKS 432 Query: 394 IKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLV 453 +K+AKK+++R++ VVWD+L++VI PV+LNRAPTLHRLGIQAF+P L+EGKAIQ+HPLV Sbjct: 433 VKSAKKLIDRKDPVVWDVLEKVIDGRPVMLNRAPTLHRLGIQAFQPHLVEGKAIQIHPLV 492 Query: 454 CAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYM 513 C A+NADFDGDQMAVH+PL+ EAQLEA LM+S +N++ P +G+P+ VPSQD+VLG+YY+ Sbjct: 493 CTAFNADFDGDQMAVHIPLSQEAQLEASLLMLSAHNLILPQSGKPVTVPSQDMVLGMYYL 552 Query: 514 TRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVK--------------------VRIT 553 T+ GEG + +E Y L LHA++ V T Sbjct: 553 TKSRGGEMGEGRIFYSAEEVRIAYNEQLVGLHAQIFMRYDGQVDQKFDAIRVMETFVEPT 612 Query: 554 EYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILG 613 + + + + + TTVGR I VP+ + +N+ + KK +++ +G Sbjct: 613 SEKAAWLRKQLDEKRMVLTTVGRVIFNQHVPESI--GFINRVIDKKVAKELIGRLSSEVG 670 Query: 614 LKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLV 673 T F D I GF YA + G SVG+ D ++PE K + I A+ + ++ +++ G + Sbjct: 671 NVETAKFLDNIKEVGFHYAMKGGLSVGLSDAIVPETKAKHIKNAQRDSTKVVKEYNRGTL 730 Query: 674 TAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGS 733 T ERYN+++D+W ++ V++ L+ + FN +YMM DSGARGS Sbjct: 731 TDNERYNQIVDVWQKTSNIVAEESYQKLKRDREG-----------FNPLYMMLDSGARGS 779 Query: 734 AAQIRQLAGMRGLMAKPD-------GSIIETPITANFREGLNVLQYFISTHGARKGLADT 786 Q+RQL GMRGL+A+P G IIE PI +N +EGL VL+YFISTHGARKGL+DT Sbjct: 780 REQVRQLTGMRGLIARPQKSMSGQPGEIIENPIISNLKEGLTVLEYFISTHGARKGLSDT 839 Query: 787 ALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEP-LRDRVLGRVTA 845 +LKTA++GYLTRRL DVAQD++VT DDCGT G+ + IE + R+++ GRV A Sbjct: 840 SLKTADAGYLTRRLHDVAQDVIVTIDDCGTTRGLYVHRNIEEETSGQIKFREKIKGRVAA 899 Query: 846 EDVLKPGTADILVPRNTLLHEQWCDLLEEN-SVDAVKVRSVVSCDTDFGVCAHCYGRDLA 904 D++ T ++LV ++ E+ D ++E V+ ++RSV++C++ G+C+ CYG +L+ Sbjct: 900 RDIVDTVTGNVLVQAGEIITEELADSIQETAGVEEAEIRSVLTCESKVGICSKCYGTNLS 959 Query: 905 RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVK 964 ++ GEA+GVIAAQSIGEPGTQLT+RTFH GGAA +E+ + G ++ +VK Sbjct: 960 VHQLVEIGEAVGVIAAQSIGEPGTQLTLRTFHQGGAAQGGISETETKAFCDGQVQFEDVK 1019 Query: 965 SVVNSSGK--------LVITSRNTELKLID-EFGRTKESYKVPYGAVLAKGDGEQVAGGE 1015 +V +++ ++ +N ++ +ID E G+ + Y +P+GA LA DG V + Sbjct: 1020 TVAHTAMNEDGMEDVRTIVIQKNGKINIIDSESGKLLKRYMLPHGAHLACEDGVLVKKDQ 1079 Query: 1016 TVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLR 1075 + +P++ +I E+ G ++F D+ G T + D TG S +++ + + Sbjct: 1080 VLFRSEPNSTQIIAELPGTIKFADIEKGVTYKEEVDPQTGFSQHTIINWRTKLRATETRE 1139 Query: 1076 PALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTK-DI 1134 P L I+D G + Y +P K+ + +EDG ++ GD LA++P+ DI Sbjct: 1140 PRLLILDENGE--------VRKTYPVPIKSNLYVEDGQKVLPGDILAKVPRNLDRVGGDI 1191 Query: 1135 TGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWR 1194 T GLP+V +LFEAR P +PAI++EI G VSFG + + + + + G + + + Sbjct: 1192 TAGLPKVTELFEARIPTDPAIVSEIDGYVSFGAQRRSSKEIKVKNDFGEEKVYY-VQVGK 1250 Query: 1195 QLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQ-GVKINDKHI 1253 + EG+ V+ GD ++DG +P DILR++G +AV +Y+VNE+Q VY++ GV+INDKH+ Sbjct: 1251 HVLANEGDEVKAGDPLTDGAVSPQDILRIQGPNAVQQYLVNEIQKVYQINAGVEINDKHL 1310 Query: 1254 EVIVRQMLRKATIVNAGSSDFLEGEQVE-------------------------------- 1281 EVIVRQML+K I G +D L G+ ++ Sbjct: 1311 EVIVRQMLQKVRIEEPGDTDLLPGDLIDRSAFIEANRAISEKVRISERGDAPARIQENQL 1370 Query: 1282 --YSRVKIANRELEANGKVGATYSR--------DLLGITKASLATESFISAASFQETTRV 1331 + NREL N K Y LLGIT A+L TES ISAASFQETT+V Sbjct: 1371 HKLRDITKLNRELRKNSKKMVAYEPALQATSHPVLLGITSAALQTESVISAASFQETTKV 1430 Query: 1332 LTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQVTAEDASA 1391 LT+AAVAGK D L GLKENVIVG+LIPAGTG ++ A Sbjct: 1431 LTDAAVAGKVDYLVGLKENVIVGKLIPAGTGLKKYKTIKLVGEESAPAPVVVEAVVSHEA 1490 Query: 1392 SLAELL 1397 + ++ Sbjct: 1491 EASPMV 1496 >UniRef50_B0VGC0 DNA-directed RNA polymerase n=2 Tax=Bacteria RepID=B0VGC0_9BACT Length = 1509 Score = 1186 bits (3067), Expect = 0.0, Method: Composition-based stats. Identities = 658/1521 (43%), Positives = 921/1521 (60%), Gaps = 149/1521 (9%) Query: 2 KDLLKFLKAQTKTEEFDAIKIALASPDMIRS-WSFGEVKKPETINYRTFKPERDGLFCAR 60 + +LK K + K E+DA++I +ASP+ IR+ WS GEV KP+T+NYRT KPE+DGLFC R Sbjct: 15 EKMLKESKHEIKPNEYDAVRIKIASPETIRNDWSHGEVTKPDTLNYRTLKPEKDGLFCER 74 Query: 61 IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120 IFGP +DYEC CGKYK+ + +G +C++CGV VT ++VRR RMGHI+LA P AHIWF+KS Sbjct: 75 IFGPERDYECACGKYKKKRFQGTVCDRCGVLVTTSRVRRTRMGHIDLAVPIAHIWFVKSA 134 Query: 121 PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKM 180 PS+IG LLDM ++D+ERVLY+ES++VI+ G + E+ ++L ++Y + ++ D F A M Sbjct: 135 PSKIGTLLDMTVKDLERVLYYESFIVIDPGDSPFEKMELLEVDEYYEIKDKVADNFLALM 194 Query: 181 GAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT 240 G EAI+ LLK ++L+ E LR L S +++KL ++K+++AF++SGN+PE MIL Sbjct: 195 GGEAIRELLKRINLKNEALDLRTRLKFEESALRKQKLINKLKIVDAFIKSGNRPEDMILE 254 Query: 241 VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ 300 LPVLPP LRPLVPL+GGRFAT+D NDLYRRVI RNNRLK LL++ AP++I+RNEKRMLQ Sbjct: 255 ALPVLPPTLRPLVPLEGGRFATADFNDLYRRVITRNNRLKALLEIRAPEVILRNEKRMLQ 314 Query: 301 EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360 EAVDAL+DNGR+ R + G RPLKSL D +KGKQGRFRQNLLGKRVDYSGRSVITVGP Sbjct: 315 EAVDALIDNGRKARPVRGRGNRPLKSLTDQLKGKQGRFRQNLLGKRVDYSGRSVITVGPE 374 Query: 361 LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP 420 L+L+QCGLPK+MA+ELFKP++ KL+ G +K AKK++E+++ +W IL+EVI+++P Sbjct: 375 LKLYQCGLPKEMAVELFKPYLIEKLQKIGEVDKVKNAKKLIEKKQPEIWSILEEVIKDYP 434 Query: 421 VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480 VLLNRAPTLHRLGIQAF PVL + KAIQLHP+VC +NADFDGDQM V++PL++E+Q+EA Sbjct: 435 VLLNRAPTLHRLGIQAFMPVLTDNKAIQLHPMVCVPFNADFDGDQMGVYIPLSIESQIEA 494 Query: 481 RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVN---AKGEGMVLTGPKEAERLY 537 R LM+ST N+L PANG + +QD+VLG YY+T + + GP E Y Sbjct: 495 RVLMLSTRNLLLPANGRLAMAANQDIVLGCYYLTMEETPPPVEIEKLRHFYGPDEVIAAY 554 Query: 538 RSGLASLHAR-VKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQAL 596 + ++ V + L ++ TTVGR I I+P + N Sbjct: 555 EAEEQFCSSKGETVYERNLDLHTWIRLKLESEYIVTTVGRVIFNQIMPPEV--GFQNIVF 612 Query: 597 GKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISE 656 K ++ + C+ +G T DQI GF YA R+G + DD+V+P++K EII++ Sbjct: 613 DKGKLNDLAMLCFDAVGQWRTAQILDQIKELGFHYATRAGVTFSFDDIVVPKRKDEIIAQ 672 Query: 657 AEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQ 716 A+ EV +I + Q G +T ER+ +V+D W RV+ MM+ L Sbjct: 673 ADQEVKKITDLHQKGGITENERFGRVVDQWKKTTVRVTDEMMEELSKTRNG--------- 723 Query: 717 VSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDG-------SIIETPITANFREGLNV 769 NSIYMM SGARGS QI+QL GMRGLM KP +IETPI +NF+EGL V Sbjct: 724 --LNSIYMMYKSGARGSKDQIKQLGGMRGLMDKPTKIGSTGGADVIETPIKSNFKEGLTV 781 Query: 770 LQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGG 829 L+YF+STHGARKGLADTALKTA++GYLTRRLVDVAQ+ ++T +DCGT G+ MT + EG Sbjct: 782 LEYFVSTHGARKGLADTALKTADAGYLTRRLVDVAQNAIITIEDCGTTRGVNMTALKEGN 841 Query: 830 DVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCD 889 ++ + L +R+ GR +D++ P T ILV + + ++ + + +V VRS+++C+ Sbjct: 842 EIVQTLAERIQGRTAVDDIVSPITGRILVSAGEEISNKMARTIQNHGLISVHVRSILTCE 901 Query: 890 TDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESS 949 + G+CA CYGR+LA G+ +G+IAAQSIGEPGTQLT+RTFHIGGAAS A + Sbjct: 902 AEKGICAKCYGRNLATQKPATIGDPVGIIAAQSIGEPGTQLTLRTFHIGGAASTATELAE 961 Query: 950 IQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTK--ESYKVPYGAVLAKGD 1007 + + G +K + +V+N+ +L+ S ++ ++DE K E +KV Y A + D Sbjct: 962 VVASHDGIVKFDRMNTVINTENQLISVSYLGKILIVDENDENKVLEEFKVEYAATVHVQD 1021 Query: 1008 GEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAER 1067 G++VA + +WD P+I+ G + + + I T + +++T L +++S +R Sbjct: 1022 GQKVAKDTKLLSWDQFNNPLISTAKGVLHYENFIKDITYKEEYNDITMARELTIIESKDR 1081 Query: 1068 TAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQE 1127 +P +IV G LIP LP IV++EDG + GD L + + Sbjct: 1082 RK-----QPQFRIVGEDGTVRLIP---------LPTGLIVRVEDGSFVHIGDILGQTSRM 1127 Query: 1128 SGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDG----- 1182 + +DITGGLPRV DLFEAR PK+ A +++I GIV+ G K R + +TP +G Sbjct: 1128 TIKQRDITGGLPRVQDLFEARVPKDKAKISDIDGIVTIGGLKKTGRDIFVTPPNGLFAPC 1187 Query: 1183 -----------------------------------SDPYEEMI--------------PKW 1193 + +++I PK Sbjct: 1188 DGKVVVLYDEDKNQYIAVLPDKAVYSENDGKVSIIEENRKKIIQVAKRNQNPVQYPVPKG 1247 Query: 1194 RQLNVFEGERVERGDVIS----------DGPEAPHDILRLRGVHAVTRYIVNEVQDVY-- 1241 Q+ V EGE V++G + + D + + A +YI+ + + Sbjct: 1248 LQILVKEGESVKKGTPLCGKLYAVPPEQESIVEIGDNVTMHQPLAGRKYIIPSGKRIIVH 1307 Query: 1242 -----------------------------------------RLQGVKINDKHIEVIVRQM 1260 R QGVKI+DKH+ VI+RQM Sbjct: 1308 QGDYVESGDALSDGPLDPHDMLVKGVIEAQILILNEIQEIYRKQGVKIDDKHVSVIIRQM 1367 Query: 1261 LRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFI 1320 +K I ++GS+ FL+G+ V+ V+ NRE GK A + + LLGITK SL TES++ Sbjct: 1368 FKKVRITDSGSTSFLQGDIVDKVLVEKENREAIEFGKTPAQFEQLLLGITKTSLLTESWL 1427 Query: 1321 SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPA 1380 SAASFQETT+VLT+AA+ G+ D L GLKE++I+G IP GTG + + M ++A E Sbjct: 1428 SAASFQETTKVLTKAAIEGRVDHLEGLKESIIIGHRIPVGTGTKLY-NNMLKKAVNEGKT 1486 Query: 1381 APQVTAEDASASLAELLNAGL 1401 Q+ E A S E L Sbjct: 1487 VAQIIDEFAHRSKEEESGDYL 1507 >UniRef50_A3EVS7 DNA-directed RNA polymerase n=9 Tax=Bacteria RepID=A3EVS7_9BACT Length = 1585 Score = 1179 bits (3049), Expect = 0.0, Method: Composition-based stats. Identities = 697/1262 (55%), Positives = 903/1262 (71%), Gaps = 41/1262 (3%) Query: 145 VVIEGGMTNLERQQILTEEQYLDALEEFGD-EFDAKMGAEAIQALLKSMDLEQECEQLRE 203 + E + +R + +++E++ EF ++GAEAI+ LLK+++LE+ ++ Sbjct: 350 KMREDLELDFKRHRPISKEEFERYKREFPRSNMKGEIGAEAIRTLLKNLNLEELATEMHA 409 Query: 204 -ELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFAT 262 L+ S +KK++KR+K++EAF +SGN+PEWMIL V+PVLPPDLRPLVPLDGGRFAT Sbjct: 410 LMLDPAVSSASKKKISKRLKIVEAFRKSGNRPEWMILDVIPVLPPDLRPLVPLDGGRFAT 469 Query: 263 SDLNDLYRRVINRNNRLKRLLDLAAPD--IIVRNEKRMLQEAVDALLDNGRRGRAITGSN 320 SDLNDLYRRVINRNNRLKRLLD+++P +I+ NE RMLQEAVDAL DNGRRGR I G+N Sbjct: 470 SDLNDLYRRVINRNNRLKRLLDVSSPTPQLIIHNEIRMLQEAVDALFDNGRRGRVIRGAN 529 Query: 321 KRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPF 380 +RPLKSL+DM+KGKQGRFRQNLLGKRVDYSGRSVI +GP L+L+QCGLPKKMALELFKPF Sbjct: 530 RRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVIGPELKLNQCGLPKKMALELFKPF 589 Query: 381 IYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPV 440 I+ KLE RGL + IK AKK VE+E+ VVWDILDEVI+EHPVLLNRAPTLHRLGIQAF+PV Sbjct: 590 IFQKLEARGLVSNIKTAKKKVEKEDPVVWDILDEVIQEHPVLLNRAPTLHRLGIQAFDPV 649 Query: 441 LIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPII 500 L+EGKAI+LHPLVCAA+NADFDGDQMAVHVPL++EAQLEAR LMMS NNILSPANG+PI+ Sbjct: 650 LVEGKAIRLHPLVCAAFNADFDGDQMAVHVPLSVEAQLEARVLMMSINNILSPANGKPIM 709 Query: 501 VPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDAN 560 VP+QD+VLG YY++++ +KGEG + +E Y +G+ HAR++VR+T+ Sbjct: 710 VPTQDMVLGCYYLSKERKGSKGEGFSFSSAEEVRIAYDAGVVEPHARIRVRMTD------ 763 Query: 561 GELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIF 620 + +TTVGR + I+P G+ + VN+ L KK ++ +++ C+R G + TV F Sbjct: 764 --ASGQVKTHETTVGRVLFSGILPSGIRFEEVNKELTKKVLTNLIDQCFRKSGRQETVGF 821 Query: 621 ADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYN 680 D+I GF +A RSG S+ I DM IP+ K E I +A EV EI+ Q+ GL+TAGERYN Sbjct: 822 LDRIKQIGFEFATRSGISIAIGDMRIPKNKSEAIEKANLEVLEIENQYNEGLITAGERYN 881 Query: 681 KVIDIWAAANDRVSKAMMDNLQTETVINRDGQE----EKQVSFNSIYMMADSGARGSAAQ 736 KVID WA + V+ MM L+ E + ++G E V FNSIYMMADSGARGSA Q Sbjct: 882 KVIDKWAQVTELVADEMMKELKAEELAVQNGTAVSEGETPVRFNSIYMMADSGARGSAQQ 941 Query: 737 IRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYL 796 IRQL GMRGLMAKP G IIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYL Sbjct: 942 IRQLGGMRGLMAKPSGEIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYL 1001 Query: 797 TRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVL------K 850 TRRLVDVAQD+++TE+DCGT GI +T ++EGG+ EPL +R+LGRV AED+ + Sbjct: 1002 TRRLVDVAQDVIITEEDCGTLNGIEVTALVEGGETIEPLEERILGRVAAEDIFVTVLKGQ 1061 Query: 851 PGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIIN 910 +I+V ++E+ + ++E+ +D +K+RSV++C T GVCA CYGRDL+ G + Sbjct: 1062 ERITEIVVGAGEEINEEKIERIKESGLDLIKIRSVLTCQTRRGVCAACYGRDLSSGKRVE 1121 Query: 911 KGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSS 970 GEAIG+IAAQSIGEPGTQLTMRTFHIGG A + A +S + K G ++ N+ +V N Sbjct: 1122 LGEAIGIIAAQSIGEPGTQLTMRTFHIGGTA-QVAKQSIHEAKRDGKVRYDNLTTVRNKE 1180 Query: 971 GKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITE 1030 G + S+N +L ++ GR KE Y + YGA + DG++V+ G + WDP + P++TE Sbjct: 1181 GANIAMSKNGKLVIVGLDGREKERYSIVYGARVLLEDGKEVSIGSKLVEWDPFSTPILTE 1240 Query: 1031 VSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLI 1090 SG V F D+ D T+ + DE +GL S V++D+ +++RP ++I +A Sbjct: 1241 ASGQVVFRDIQDRVTMREEIDEASGLKSRVIIDN-----AKQNMRPRIEIREA------- 1288 Query: 1091 PGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRP 1150 G+ +Y LP A + +E+ +S+GD +A+IP+ES TKDITGGLPRVA+LFEAR+P Sbjct: 1289 -GSKNRKEYPLPIGAHILVEEKENVSTGDVIAKIPRESTKTKDITGGLPRVAELFEARKP 1347 Query: 1151 KEPAILAEISGIVSFGKETKGK-RRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDV 1209 KE A++ EI GIV F +G+ R+++ + + E IPK + ++V E + VE G+ Sbjct: 1348 KEQAVITEIEGIVEFKDGRQGRSNRVILVKNEQGEEKEYTIPKGKHVSVHENDWVEAGEP 1407 Query: 1210 ISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNA 1269 + DG PHDIL + G + Y+VNEVQ+VYRLQGV INDKHIEVIVRQMLRK I + Sbjct: 1408 LMDGSVNPHDILNVLGPQDLMTYLVNEVQEVYRLQGVSINDKHIEVIVRQMLRKVRIDDP 1467 Query: 1270 GSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETT 1329 G +DFL G QV+ + N ++ GK+ A LLGITKA+L+TESFISAASFQETT Sbjct: 1468 GDTDFLVGSQVDRGIFEEVNDQIVQLGKLPAKGGSMLLGITKAALSTESFISAASFQETT 1527 Query: 1330 RVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQVTAEDA 1389 RVLTEAA+ GK D L GLKENVIVGRLIPAGTG+ + A GE + Q ++ Sbjct: 1528 RVLTEAAINGKTDALVGLKENVIVGRLIPAGTGFPKFRM----TAVGEVESESQKELSES 1583 Query: 1390 SA 1391 + Sbjct: 1584 GS 1585 Score = 176 bits (447), Expect = 4e-42, Method: Composition-based stats. Identities = 105/142 (73%), Positives = 124/142 (87%) Query: 11 QTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYEC 70 ++ F A+KI LAS + IRSWSFGEVKKPETINYR+FKPERDGLFCA+IFGPVKD+EC Sbjct: 51 DSEVMSFSALKIMLASSEKIRSWSFGEVKKPETINYRSFKPERDGLFCAKIFGPVKDWEC 110 Query: 71 LCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDM 130 CGKYKR+KHRGVIC+KCGVEV Q+KVRRERMGHIELA+P AHIWFLK LPSRIG LLDM Sbjct: 111 NCGKYKRMKHRGVICDKCGVEVIQSKVRRERMGHIELAAPVAHIWFLKGLPSRIGNLLDM 170 Query: 131 PLRDIERVLYFESYVVIEGGMT 152 ++D++++LYFESYV+ + G Sbjct: 171 TIKDLDQILYFESYVITDLGDI 192 >UniRef50_B2V7L9 DNA-directed RNA polymerase subunit beta' n=11 Tax=Bacteria RepID=RPOC_SULSY Length = 1579 Score = 1134 bits (2933), Expect = 0.0, Method: Composition-based stats. Identities = 631/1433 (44%), Positives = 883/1433 (61%), Gaps = 121/1433 (8%) Query: 18 DAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKR 77 +K+ + S D R E E Y + + ARI + K Sbjct: 169 KYVKLHVVSEDEFRER-EYEYSNAEKYEYGMGAEKVKDVL-ARIDLEILAKRL---KKDL 223 Query: 78 LKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIER 137 + G + + R IE+A + + ++I+ Sbjct: 224 HGYAGTF-DDLNLSYKMNYPRLYNKAIIEIARKFSEVGLRFGDIEP-------TEKEIDV 275 Query: 138 VLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMD---- 193 ++ Y+VI+ ++L+ QI+ E ++ + A G EA++ L K+ Sbjct: 276 IISQGYYIVIDPASSDLKFGQIINPEN----VDSLPEGVIALTGVEALEKLYKAYREKVK 331 Query: 194 ----LEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDL 249 E E +R + + ++ + KK+ +R++L+E F++S NKPEWMIL VLPV+PPDL Sbjct: 332 EIPIFEVIKESVRNVILKEGTDARLKKIIRRLRLVEGFIESENKPEWMILEVLPVIPPDL 391 Query: 250 RPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDN 309 RPL+ LDGGRFA+SDLNDLYRRVINRNNRLKRL+DL AP+II+RNEKRMLQEAVDAL+DN Sbjct: 392 RPLIALDGGRFASSDLNDLYRRVINRNNRLKRLIDLDAPEIIIRNEKRMLQEAVDALIDN 451 Query: 310 GRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLP 369 GRRGR +T N RPLKSL+D ++GK+GRFRQNLLGKRVDYSGRSVI VGP L++H+CGLP Sbjct: 452 GRRGRMVTQ-NNRPLKSLSDSLRGKEGRFRQNLLGKRVDYSGRSVIVVGPELQMHECGLP 510 Query: 370 KKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTL 429 K+MALELFKPFIY +LE +G AT+IK+AKK+VE + V++ L+EV+++HPVLLNRAPTL Sbjct: 511 KQMALELFKPFIYRRLEEKGYATSIKSAKKLVEEKVPEVYECLEEVVKQHPVLLNRAPTL 570 Query: 430 HRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNN 489 HR+ +QAFEP L+EGKAI+LHPLVC +NADFDGDQMAVHVPL++EAQLE+ LM+ST N Sbjct: 571 HRMSVQAFEPKLVEGKAIKLHPLVCPPFNADFDGDQMAVHVPLSVEAQLESYILMLSTQN 630 Query: 490 ILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVK 549 ILSPA+G+P+ +PSQD++LG++YMT++ NAKGEG + P+EA Y G L A++K Sbjct: 631 ILSPAHGKPVTMPSQDIILGVHYMTQELPNAKGEGKIFGSPEEAVTAYELGTIDLLAKIK 690 Query: 550 VRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCY 609 VRI + +TT GR I I+P+G VN+ L KK ISK+++ Y Sbjct: 691 VRIN-------------GKIVETTAGRIIFNQILPEGYK--FVNEVLDKKKISKLISDIY 735 Query: 610 RILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQ 669 G + D+I GF +A ++ S+ + D+V+P+KK +I+ +A E + +Q+ Sbjct: 736 EKYGNEIAAQTLDKIKEIGFRFATKAAVSISVADLVVPKKKAKILEKAIKEAETVWKQYV 795 Query: 670 SGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSG 729 G++T GER+NK+IDIW+ A + V+K M + ++ + + ++ FN +YMMA SG Sbjct: 796 DGIITKGERHNKIIDIWSQATNEVAKEMFNEIEKSERV--ENGKKYPGYFNPVYMMASSG 853 Query: 730 ARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALK 789 ARGS QIRQLAGMRGLMAK G IETPI +NFREGL+V++YFIST+GARKGLADTALK Sbjct: 854 ARGSRDQIRQLAGMRGLMAKHSGEFIETPIMSNFREGLSVVEYFISTYGARKGLADTALK 913 Query: 790 TANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVL 849 TA +GYLTRRL DVAQD+++T +DCGT +GI ++ +IE G++ P +DR++GR TAEDV Sbjct: 914 TAVAGYLTRRLADVAQDVIITGEDCGTLKGITVSSIIESGEIVVPFKDRIIGRYTAEDVY 973 Query: 850 KPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHII 909 P T ++L+ N + E+ D E+ ++ VK+RSV++C+ GVCA CYGRDLA+ ++ Sbjct: 974 DPYTGELLISANEEITEEVVDKFEKAGIEKVKIRSVLTCEMPHGVCAKCYGRDLAQRKLV 1033 Query: 910 NKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNS 969 + GEA+G+IAAQSIGEPGTQLTMRTFHIGGAA+ ++ + + G++KL NVK VV+ Sbjct: 1034 DIGEAVGIIAAQSIGEPGTQLTMRTFHIGGAATAKEVQTQHKATHDGTVKLQNVKFVVDK 1093 Query: 970 SGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVIT 1029 G+ +I +R +K++D+ G+T E + PYGAVL DG++V G +A W+P + P+I Sbjct: 1094 KGRKLIINREGSIKILDKEGKTIERFPAPYGAVLYVEDGQEVKEGTILAEWEPFSDPIIA 1153 Query: 1030 EVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGND-- 1087 E G V D+I T+ + D +TG + + + R + P L I GN+ Sbjct: 1154 EKGGEVELRDVILDVTLKEERDNITGKTIYTI--TFLRPKDAQLHTPRLVIKGEDGNEYV 1211 Query: 1088 --------VLIPGTDMPA-----------QYFLPGKAIVQLEDGVQISSGDTLARIPQES 1128 +LIP ++ + +Q++ G ++S GD +A+IP+E Sbjct: 1212 YDLPVNTILLIPKENLEEVWDKCFACSEAEKTDIHHKYLQVKKGFKVSEGDVVAKIPKEK 1271 Query: 1129 GGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRL------------- 1175 +DI GGLPRV +L EAR PK AI+ EI GIV ++ K + Sbjct: 1272 AKVRDIVGGLPRVEELLEAREPKNKAIITEIDGIVKIYEDAKEITLINPKEGKTETYKVP 1331 Query: 1176 ------------------------VITPVDG------------------SDPYEEMIPKW 1193 ++ DG + +PK Sbjct: 1332 DTTFVIVKNGSFVKAGQSLVDDGSIVAEFDGMVRLKSEGSRIVVFNKETGQQKDYKVPKG 1391 Query: 1194 RQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHI 1253 + + V + V+ GD ++DG PHDILR+ G+ + ++V E Q VYRLQGV+INDKH Sbjct: 1392 KFIIVKDNSVVKAGDPLTDGTPNPHDILRVMGIEELAAFLVKEAQIVYRLQGVEINDKHF 1451 Query: 1254 EVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKAS 1313 EVI+RQ+LRK IV+ G S FL E V+ ++ ++ + G L+GITKA+ Sbjct: 1452 EVIIRQILRKVKIVDPGDSRFLLNEIVDKLDLEEEINKVISEGGRPPKAEPVLVGITKAA 1511 Query: 1314 LATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYH 1366 L T S+ISAASFQETTRVL +AAV GK D L+GLKENVI+G +IPAGTG + Sbjct: 1512 LTTRSWISAASFQETTRVLADAAVEGKVDPLKGLKENVIIGGIIPAGTGIKEY 1564 Score = 192 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 116/223 (52%), Positives = 161/223 (72%), Gaps = 23/223 (10%) Query: 7 FLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVK 66 K + +T FDAI+++LASP++IRSWS GEVKKPET+NYRT KPE+DGLF ARIFGP+K Sbjct: 2 EAKERKETVRFDAIRLSLASPEIIRSWSHGEVKKPETLNYRTLKPEKDGLFDARIFGPIK 61 Query: 67 DYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGL 126 DYECLCGKYK+ K+ G IC++CGVEVT++ VRRER GHIELASP HIW+LKS PS+IG Sbjct: 62 DYECLCGKYKKRKYEGTICDRCGVEVTRSDVRRERFGHIELASPVVHIWYLKSTPSKIGS 121 Query: 127 LLDMPLRDIERVLYFESYVVI---------------------EGGMTNLERQQILTEEQY 165 LLD+ RDIERV+YFESY+VI EGG+T + +++E+++ Sbjct: 122 LLDLTSRDIERVVYFESYLVIEHPTEEEEEAFEKDPKSLPLMEGGLTKYVKLHVVSEDEF 181 Query: 166 LDALEEFG--DEFDAKMGAEAIQALLKSMDLEQECEQLREELN 206 + E+ ++++ MGAE ++ +L +DLE ++L+++L+ Sbjct: 182 REREYEYSNAEKYEYGMGAEKVKDVLARIDLEILAKRLKKDLH 224 >UniRef50_C0QQL7 DNA-directed RNA polymerase n=7 Tax=Bacteria RepID=C0QQL7_PERMH Length = 1586 Score = 1120 bits (2896), Expect = 0.0, Method: Composition-based stats. Identities = 637/1453 (43%), Positives = 884/1453 (60%), Gaps = 131/1453 (9%) Query: 18 DAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVK--DYECLCGK- 74 +K+ + S + R E Y + G+ ++ + D E K Sbjct: 170 KYVKLFVKSEEEFR----------EAYEYEHSEKYEYGMGAEKVKDILSRLDLEAYAHKL 219 Query: 75 YKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRD 134 K +K V ++ G E T+ R + E+A A + F R G ++ ++ Sbjct: 220 RKEMKSYAVGYDELGPEFKNTQERLYKKVISEIARRLAEVGF------RFGEVVPTD-KE 272 Query: 135 IERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDE-FDAKMGAEAIQALLKSMD 193 I+ + E +VVI+ T L + Q++ E+ EE G+E F+ G A++ L + Sbjct: 273 IDAIFTKEYFVVIDPKDTELLKGQLIHREEVERLREELGEEAFEVDSGPGALEKLYRDYR 332 Query: 194 --------LEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVL 245 + E +R+ + + +E K KKL +R++L+E F++SGN+PEWMIL V+PV+ Sbjct: 333 DKNPDIPVFDIIKESVRQTILKEVAEQKLKKLVRRLRLIEGFIKSGNRPEWMILDVIPVI 392 Query: 246 PPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDA 305 PPDLRPL+PLDGGRFATSDLNDLYRRVINRNNRLKRL++L AP+II+RNEKRMLQEAVD Sbjct: 393 PPDLRPLIPLDGGRFATSDLNDLYRRVINRNNRLKRLIELDAPEIIIRNEKRMLQEAVDT 452 Query: 306 LLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQ 365 L+DNGRRGR +T N RPLKSL+D ++GKQGRFRQNLLGKRVDYSGRSVI VGP L++H+ Sbjct: 453 LIDNGRRGRIVTQ-NNRPLKSLSDSLRGKQGRFRQNLLGKRVDYSGRSVIVVGPDLQMHE 511 Query: 366 CGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNR 425 CGLPK MALELFKPFIY +LE +G AT+IK AKKMVE + VW+ L+EV+++HPVLLNR Sbjct: 512 CGLPKIMALELFKPFIYRRLEEKGYATSIKNAKKMVEEKAPEVWECLEEVVKQHPVLLNR 571 Query: 426 APTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMM 485 APTLHR+ +QAFEP L+EGKAI+LHPLVC +NADFDGDQMAVHVPL++EAQ+E+ LM+ Sbjct: 572 APTLHRMSVQAFEPKLVEGKAIKLHPLVCPPFNADFDGDQMAVHVPLSVEAQIESYILML 631 Query: 486 STNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLH 545 ST NILSPA+G+PI +PSQD++LG +YMT+ AKGEG EA Y G L Sbjct: 632 STQNILSPAHGKPITMPSQDIILGAHYMTQAIEGAKGEGKYFADEDEAILAYELGKVDLL 691 Query: 546 ARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKML 605 A++KV + +TTVGR I + P+G +N+ + KK ISK++ Sbjct: 692 AKIKV-------------KKDGKVVETTVGRLIFNKVFPEGYR--FINETVDKKKISKII 736 Query: 606 NTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQ 665 + Y G + V D++ GF YAAR+G S+ IDD+V+P KK EI+ +AE E + Sbjct: 737 SEIYDQFGNEIAVDTLDRLKALGFEYAARAGISIAIDDLVVPSKKWEIVRKAEKEAERVW 796 Query: 666 EQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMM 725 +Q+ G++T GER+NKVIDIW+ + V+K M D ++ + + +E +FN IYMM Sbjct: 797 QQYVDGIITKGERHNKVIDIWSQTTNEVTKMMFDEIENSKRV--ENGKEYPGTFNPIYMM 854 Query: 726 ADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLAD 785 A SGARG+ QIRQLAGMRGLMAK G IETPI +NFREGL V++YFIST+GARKGLAD Sbjct: 855 ALSGARGNRDQIRQLAGMRGLMAKHSGEFIETPIRSNFREGLTVVEYFISTYGARKGLAD 914 Query: 786 TALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTA 845 TALKTA +GYLTRRLVDVAQD+V+T +DCGT G++++ VIEGG++ PL++R+LGR A Sbjct: 915 TALKTAVAGYLTRRLVDVAQDVVITNEDCGTLNGLVVSAVIEGGEIVVPLKERILGRYAA 974 Query: 846 EDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLAR 905 ED+ P T +++V + E+ +E ++ VK+RSV++C+ GVCA CYGRDL++ Sbjct: 975 EDIYDPYTEELIVSAGEEIDEEKAQEIENAGIEEVKIRSVLTCEQKRGVCAKCYGRDLSQ 1034 Query: 906 GHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKS 965 +++ GEA+G+IAAQSIGEPGTQLTMRTFHIGGAA+ A ++ + +G +KL NVK+ Sbjct: 1035 KKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHIGGAATAKAVQTKHEASVEGKVKLLNVKT 1094 Query: 966 VVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTM 1025 V + GK+++ +R+ +K++DE G+ KE + VPYG VL DG+ V G+T+ WDP ++ Sbjct: 1095 VTDKEGKVLVINRDGAIKIVDEEGKIKERFPVPYGGVLKVKDGQDVKPGDTLVEWDPFSI 1154 Query: 1026 PVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQG 1085 P+I E SG + D+I T+ + D +TG + + + S R P + I G Sbjct: 1155 PIIAEKSGTLELRDIILDVTLREERDNITGKTIMDI--SFMRPKDAVLHTPRMIIKGDDG 1212 Query: 1086 N----DVLIPGTDMPAQYFLPGK-----------------AIVQLEDGVQISSGDTLARI 1124 D+ + M ++ L K ++++ G +++ GD +A+I Sbjct: 1213 KEYAYDLPVNTILMLSRDQLETKWDKCPACSEAEKADVYHNYLEVKAGFKVNEGDIIAKI 1272 Query: 1125 PQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSD 1184 P+E+ +DI GGLPRV +L EAR PK AI++EI GIV ++ +++ Sbjct: 1273 PKETAKVRDIVGGLPRVEELLEAREPKNRAIVSEIDGIVRIYEDADD---IIVYNPITGQ 1329 Query: 1185 PYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHD----------------------ILR 1222 +PK + V G+ V+ G ++D + + R Sbjct: 1330 SETYDVPKDALVIVKNGQHVQEGQHLTDDGSVKAEFEGIVRLKSKGVKVIVFNKETGLQR 1389 Query: 1223 LRGVHAVTRYIVNEVQDV------------------------------------YRLQGV 1246 + IV + + V YRLQGV Sbjct: 1390 EYSIAKGKFIIVKDGETVKAGDPLTDGTPNPHDILKIMGPEELAKFLVKEVQMVYRLQGV 1449 Query: 1247 KINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDL 1306 INDKH EVI+RQ+LRK IV+ G S FL E V+ ++ + + G L Sbjct: 1450 DINDKHFEVIIRQILRKVKIVDPGDSRFLLNEIVDRIDLEEEIQRIAEEGGKPPKAEPVL 1509 Query: 1307 LGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYH 1366 +GITKASL+T S+ISAASFQETTRVL +AAV GK D+L GLKENVI+G ++PAGTG + Sbjct: 1510 VGITKASLSTRSWISAASFQETTRVLADAAVEGKEDKLEGLKENVIIGNIVPAGTGIKQY 1569 Query: 1367 QDRMRRRAAGEAP 1379 + E Sbjct: 1570 AEVEAILPREEIE 1582 Score = 179 bits (453), Expect = 8e-43, Method: Composition-based stats. Identities = 112/213 (52%), Positives = 152/213 (71%), Gaps = 22/213 (10%) Query: 17 FDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYK 76 F++I++ LASP+ IR WS GEVKKPET+NYRT KPE+DGLFCA+IFGPVKDYECLCGKYK Sbjct: 13 FESIRLTLASPERIREWSHGEVKKPETLNYRTLKPEKDGLFCAKIFGPVKDYECLCGKYK 72 Query: 77 RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIE 136 + K+ G IC++CGVEVT++ VRRER GHIELASP AHIW+LKS PS+IG LL + RDIE Sbjct: 73 KKKYEGTICDRCGVEVTRSDVRRERFGHIELASPVAHIWYLKSTPSKIGNLLGLTSRDIE 132 Query: 137 RVLYFESYVVI---------------------EGGMTNLERQQILTEEQYLDALE-EFGD 174 RV+YFESY+++ +G +T + + +EE++ +A E E + Sbjct: 133 RVIYFESYLIVEHPDEEEEEAFENDPNTIPLMDGALTKYVKLFVKSEEEFREAYEYEHSE 192 Query: 175 EFDAKMGAEAIQALLKSMDLEQECEQLREELNE 207 +++ MGAE ++ +L +DLE +LR+E+ Sbjct: 193 KYEYGMGAEKVKDILSRLDLEAYAHKLRKEMKS 225 >UniRef50_D1BP71 DNA-directed RNA polymerase n=10 Tax=Veillonellaceae RepID=D1BP71_VEIPT Length = 1400 Score = 1118 bits (2892), Expect = 0.0, Method: Composition-based stats. Identities = 624/1456 (42%), Positives = 843/1456 (57%), Gaps = 138/1456 (9%) Query: 13 KTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLC 72 EFD+++I LASP+ I SWS GEVKKPETINYRT KPERDGLFC RIFGP KD+EC C Sbjct: 3 DVNEFDSMRIGLASPEQILSWSHGEVKKPETINYRTLKPERDGLFCERIFGPTKDWECHC 62 Query: 73 GKYKRLKHRGVICEKCGVEVTQTK---VRRE-------------------RMGHIELASP 110 GKYKR++H+GV+C+KCGVEVT+ K R RMG I SP Sbjct: 63 GKYKRIRHKGVVCDKCGVEVTRAKVRRERMGHIQLATPVSHIWYFKGIPSRMGLILDISP 122 Query: 111 --TAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESY---------------VVIEGGMTN 153 + + S + R + F Y VVIE Sbjct: 123 RSLERVLYFASYIVVDPAGTPLTKRQLLSEQEFREYEAQFNEDGYTIGGKSVVIETVAQR 182 Query: 154 LERQQILTEEQYLDA----------LEEFGDEFDA--------------------KMGAE 183 ER I+ E Q + + E E++ MGAE Sbjct: 183 NERLAIVREAQRKERYNAALRDDATIPEADKEYEELTREERYELGAAEEVLFACIDMGAE 242 Query: 184 AIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLP 243 A++ALL +DLE +LREELN T S ++ + +R++++EAF QSGN+PEWMI+ ++P Sbjct: 243 AVKALLSELDLEALNAELREELN-TASGQRKIRAVRRLEVVEAFRQSGNRPEWMIMDIVP 301 Query: 244 VLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAV 303 V+PP+LRP+V LDGGRFATSDLNDLYRRVINRNNRLKRLLDL APDIIVRNEKRMLQEAV Sbjct: 302 VIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEAV 361 Query: 304 DALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRL 363 DAL+DNGRRGR +TG RPLKSL+DM+KGKQGRFRQNLLGKRVDYSGRSVI VGP L++ Sbjct: 362 DALIDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKM 421 Query: 364 HQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLL 423 HQCGLPK+MALELFKPF+ +L RG A+ IKAAK+ VER VW+ L+EVI+EHPVLL Sbjct: 422 HQCGLPKEMALELFKPFVMKRLVERGQASNIKAAKRQVERIGPGVWESLEEVIKEHPVLL 481 Query: 424 NRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARAL 483 NRAPTLHRLGIQAFEP+L EG+AI+LHPLVC A+NADFDGDQMA H+PL++EAQ EAR L Sbjct: 482 NRAPTLHRLGIQAFEPILWEGRAIKLHPLVCTAFNADFDGDQMACHLPLSVEAQAEARTL 541 Query: 484 MMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLAS 543 M+S++NILS +G+P+ VPSQD++LG YY+T N + + E Y S + Sbjct: 542 MLSSHNILSTKDGKPVAVPSQDMILGTYYLTVVRENTRDKAKTFATYDEVMLAYESHIIG 601 Query: 544 LHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISK 603 L + +R+ ++ + L LW + + + + KK + K Sbjct: 602 LQDILYIRLPDHGRVETTAG----RLIFNNALFPELWQYEKREDGTYSLGKVMDKKTVGK 657 Query: 604 MLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAE 663 +++ C+++ G + T D+I G+++A R+G +V I D+ +PE K ++ AE EV + Sbjct: 658 LVDQCFQLFGNEKTAELLDRIKSLGYSFARRAGMTVAIADIKVPEVKTSLLDTAEQEVEK 717 Query: 664 IQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIY 723 + ++ GL+T ERY K I +W A + V+ AMMDN+ + + FN +Y Sbjct: 718 VSRMYRRGLITEEERYRKTIQLWTKATEDVTDAMMDNMACD-----------KDGFNPVY 766 Query: 724 MMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGL 783 MMA SGARG+ QIRQLAGMRGLMA P G II+ PI ANF+EGL VL YF S+HGARKGL Sbjct: 767 MMAISGARGNKQQIRQLAGMRGLMADPSGRIIDLPIKANFKEGLTVLDYFTSSHGARKGL 826 Query: 784 ADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEG-----GDVKEPLRDR 838 ADTAL+TA+SGYLTRRLVDV+QD++V EDDC GI + E L+D+ Sbjct: 827 ADTALRTADSGYLTRRLVDVSQDVIVREDDCDV-VGIDLVRERARLATSPRQALELLKDK 885 Query: 839 VLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHC 898 ++GRV +DV+ T +++VP T+L EQ + E V ++ +R Sbjct: 886 LIGRVLDKDVVNAETGELVVPAETILDEQCLADIAEAGVTSIALRG----------AHLG 935 Query: 899 YGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSI 958 D+ +++ +I +S + + T++ + ++ ++ + ++G Sbjct: 936 SDSDINHTNLVQ-----KIILGES--DDSIRATLKETMVQNMLNKDTVQAIV--DSEGVE 986 Query: 959 KLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVA 1018 + + ++ S E+++ R E + + +V + Sbjct: 987 IFPADTRLTEEGIEAILNSDVKEVQV-----RNNEIHGI------------EVEA---IV 1026 Query: 1019 NWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPAL 1078 P+ + G + ++++ +T L G + + D + +R L Sbjct: 1027 EGTGVIEPLKDRIVGRIAAEELVNKET-GEVIVPLNGEITEALADEVVKHYETVKIRSVL 1085 Query: 1079 KIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDTLARIPQESGGT--KDIT 1135 G G D+ + V + I G L +GG DIT Sbjct: 1086 TCRSPYGVCRKCYGRDLGTGNQVQVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDIT 1145 Query: 1136 GGLPRVADLFEARRPKEPAILAEISGIVSF--GKETKGKRRLVITPVDGSDPYEEMIPKW 1193 GLPRV +LFEAR+PK AI+AE G V + KG + IT DG + + +IP Sbjct: 1146 QGLPRVEELFEARKPKRNAIIAENEGTVRVVPNEGKKGTNTIFITGEDGIE-LDYLIPYG 1204 Query: 1194 RQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHI 1253 ++ V +G+ V G +++G PHDI+R+ G A RY+V EVQ VY+ QGV+INDKHI Sbjct: 1205 SRIIVKDGDVVSLGARLTEGSINPHDIMRVMGTEATQRYLVYEVQKVYKSQGVEINDKHI 1264 Query: 1254 EVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKAS 1313 EVIVRQML K I AG +D L G+ V+ + NR L NG+ AT R LLGITKA+ Sbjct: 1265 EVIVRQMLHKVKIETAGDADMLPGDMVDVNTFDEENRRLTLNGRENATGKRTLLGITKAA 1324 Query: 1314 LATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRR 1373 LAT+SF+SAASFQETTRVLT+AA+ GK D L GLKENVI+G+LIPAGTG + ++ + Sbjct: 1325 LATDSFLSAASFQETTRVLTDAAIKGKIDPLLGLKENVIIGKLIPAGTGMSRYRKIEVVK 1384 Query: 1374 AAGE-APAAPQVTAED 1388 E +V +ED Sbjct: 1385 NTPEIIDITEEVMSED 1400 >UniRef50_B1GZ76 DNA-directed RNA polymerase subunit beta' n=2 Tax=Bacteria RepID=RPOC_UNCTG Length = 1593 Score = 1108 bits (2864), Expect = 0.0, Method: Composition-based stats. Identities = 607/1267 (47%), Positives = 837/1267 (66%), Gaps = 56/1267 (4%) Query: 135 IERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDL 194 R+ ++ + + + +L E + FGD +GAEA+++LL+ ++L Sbjct: 324 CLRIEILKNKIPFIENFSRSDSFVLLEESDINNIQNGFGDSLKVNIGAEAVRSLLEEINL 383 Query: 195 EQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVP 254 + E + + E+ +T S+ +R +L ++++++E F+ S +PEWMILTVLPV+PPDLRPLV Sbjct: 384 DDEMKNIYAEIKKTKSDAERARLLRKLRVVEGFLNSQTRPEWMILTVLPVIPPDLRPLVA 443 Query: 255 LDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGR 314 LDGGRFATSDLNDLYRR+INRNNRL+ + L AP +++ NEKR+LQEAVDAL+DN R R Sbjct: 444 LDGGRFATSDLNDLYRRIINRNNRLRHIEQLKAPIVMINNEKRLLQEAVDALIDNDSRMR 503 Query: 315 AITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMAL 374 +TG+ R LKSL+D +KGK+GRFRQNLLGKRVDYSGRSVI VGP LRL+QCG+PK+MAL Sbjct: 504 PVTGAGNRILKSLSDTLKGKRGRFRQNLLGKRVDYSGRSVIVVGPNLRLNQCGIPKEMAL 563 Query: 375 ELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGI 434 ELFKPFI +L + T+++AK+M+ER + VW+IL++V + HPVLLNRAPTLHRLGI Sbjct: 564 ELFKPFIVKELIKQE-NITLRSAKRMLERGDLKVWNILEKVTQSHPVLLNRAPTLHRLGI 622 Query: 435 QAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPA 494 QAFEPVL+EGK+IQLHPL C+A+NADFDGDQMAVH+P++LEAQLEAR LMM+T NILSPA Sbjct: 623 QAFEPVLVEGKSIQLHPLTCSAFNADFDGDQMAVHLPISLEAQLEARVLMMATRNILSPA 682 Query: 495 NGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKV---- 550 +G PI VPSQD+VLG Y+T++ GEG V + EA Y++ L AR+KV Sbjct: 683 SGRPIAVPSQDMVLGNCYLTKEKYGVVGEGKVFSSVSEAISAYQAEKVDLQARIKVAGIT 742 Query: 551 RITEYEKDANGELVAKTSLKD------------TTVGRAILWMIVPKG----LPYSIVNQ 594 I + + + E T K+ TTVGR I +PK N+ Sbjct: 743 SIRDKNLNNDDEQPDVTKWKNCKSEDDTEIINYTTVGRIIFNEQLPKNDDGSYALEYQNK 802 Query: 595 ALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEII 654 ++ KK + +++ CY+ LG T + D+I G+ YA +G S+ ID+M +P +K +++ Sbjct: 803 SMTKKELVALVDRCYKELGQFKTTVLLDEIKRIGYKYATLAGISISIDEMKVPTEKEKMV 862 Query: 655 SEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEE 714 EA+ +++EI++Q + GL+T ERYN++IDIW D +S M D ++ E + Sbjct: 863 REAKTKISEIEKQAKLGLITESERYNRIIDIWTRVTDEISDIMFDEMRKEETKAYKPGQN 922 Query: 715 KQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPD-------GSIIETPITANFREGL 767 + FNSI+MMADSG+RGS Q+RQLAGMRGLMAKP G IIETPI +NFREGL Sbjct: 923 R---FNSIFMMADSGSRGSRQQVRQLAGMRGLMAKPQKKLTGGIGEIIETPIISNFREGL 979 Query: 768 NVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIE 827 VL+YFISTHG RKGLADTALKTA +GYLTRRLVDVA D+VV E+DCGT G+ + + Sbjct: 980 TVLEYFISTHGGRKGLADTALKTAEAGYLTRRLVDVAHDVVVREEDCGTVNGVFIGTLRC 1039 Query: 828 GGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVS 887 G ++ E + +RV+GR ++V+ D+++ R L+ + + L E +D + +RSV++ Sbjct: 1040 GDEIIEKIDERVVGRTALDNVVDIVHDDLIIKRGELITPKKAEKLVEAGIDKIGIRSVLT 1099 Query: 888 CDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAE 947 C++ GVCA CYG + A G + GEA+G++AAQSIGEPGTQLT+RTFHIGGAASR Sbjct: 1100 CESGHGVCAKCYGVNPATGEQVEMGEAVGILAAQSIGEPGTQLTLRTFHIGGAASRVVQR 1159 Query: 948 SSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGD 1007 S + +N G++ N+K++ N G+ ++ SRN EL + K+ Y++PYGAV+ D Sbjct: 1160 SEVYAENNGTVNYYNLKTIQNKDGETIVLSRNAELVYTEYPVYRKQIYQIPYGAVIKIYD 1219 Query: 1008 GEQVA----------GGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLS 1057 G+ V +A WDPH+ P+I+E G V F D+ DG T+ R+ ++TG Sbjct: 1220 GQTVEIRVNPITGMKKDILIAKWDPHSKPIISEFDGTVNFVDVKDGVTLQREKSKITGQI 1279 Query: 1058 SLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISS 1117 V+++ + P + + G+ V +Y LP + + D ++ S Sbjct: 1280 ERVIIEHSSDRRS-----PRIVVKKDDGSVV---------EYPLPVDTTLVVRDKDRVKS 1325 Query: 1118 GDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVS-FGKETKGKRRLV 1176 GD LA+IPQE TKDITGGLPRVA+LFE RRP+ A+++EI GIV G KG ++ Sbjct: 1326 GDILAKIPQEISRTKDITGGLPRVAELFEGRRPRNVAVVSEIDGIVHLVGPTVKGNVKVE 1385 Query: 1177 ITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNE 1236 + + ++ R L V+EG+RV+ G+ +SDG PHDIL+++G V Y+VNE Sbjct: 1386 VENPETKMKKSYLVRAGRHLVVYEGDRVKEGEALSDGAINPHDILKVKGPKEVQEYLVNE 1445 Query: 1237 VQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANG 1296 +Q VYRLQGV INDKHIE+IVRQML I ++G S +L GE V + +I + ++ Sbjct: 1446 IQQVYRLQGVSINDKHIEIIVRQMLSNVRITDSGDSHYLNGEIVSRYKYEIDRKAIKGKK 1505 Query: 1297 KVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRL 1356 LLGITKASL+++SFISAASFQETTR+LTEAAV+G+ D L+GLKENV +GRL Sbjct: 1506 GKAPIAHSILLGITKASLSSDSFISAASFQETTRILTEAAVSGQVDYLKGLKENVSIGRL 1565 Query: 1357 IPAGTGY 1363 IPAGTG Sbjct: 1566 IPAGTGL 1572 Score = 170 bits (430), Expect = 3e-40, Method: Composition-based stats. Identities = 101/203 (49%), Positives = 144/203 (70%), Gaps = 2/203 (0%) Query: 17 FDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYK 76 FDA+++++ASPD I++WS+GEVKKPETINYRTFKPERDGLFC RIFGP KD+EC CGKYK Sbjct: 21 FDAVRVSVASPDQIKTWSYGEVKKPETINYRTFKPERDGLFCNRIFGPTKDWECHCGKYK 80 Query: 77 RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIE 136 +K++G IC++CGVEVT++KVRRER GHI LA P AH+WFLK PSR+G+LL+M + D+E Sbjct: 81 YIKYKGTICDRCGVEVTESKVRRERFGHINLAVPVAHLWFLKKPPSRVGILLNMKISDLE 140 Query: 137 RVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQ 196 +V+Y+ Y+V+ G + + + L E+F + F + ++ K++ Sbjct: 141 KVIYYAKYIVM-GDLKDRSGISFFARKGMLMGGEDF-NLFKYGINNPIVKEEFKNIFDGI 198 Query: 197 ECEQLREELNETNSETKRKKLTK 219 CE+++ + N T + + K L K Sbjct: 199 VCEEIKLDSNLTKALKQLKVLVK 221 >UniRef50_A5D5I3 DNA-directed RNA polymerase subunit beta' n=11 Tax=Clostridia RepID=RPOC_PELTS Length = 1170 Score = 1103 bits (2852), Expect = 0.0, Method: Composition-based stats. Identities = 587/1099 (53%), Positives = 757/1099 (68%), Gaps = 39/1099 (3%) Query: 13 KTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLC 72 FD I+I LASPD IR+WS GEVKKPETINYRT KPERDGLFC RIFGP +D+EC C Sbjct: 3 DLNNFDRIRIGLASPDQIRAWSSGEVKKPETINYRTLKPERDGLFCERIFGPTRDWECHC 62 Query: 73 GKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPL 132 GKYKR++++GV+C++CGVEVT++KVRRER+GHIELA+P +HIW+ K +PSR+GLLLDM Sbjct: 63 GKYKRVRYKGVVCDRCGVEVTRSKVRRERLGHIELAAPVSHIWYFKGIPSRMGLLLDMSP 122 Query: 133 RDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSM 192 R +E+VLYF SY+V + G T L ++Q+LTE +Y D E +G+ F A MGAEAI+ LL+ + Sbjct: 123 RALEKVLYFVSYIVTDPGDTGLIKKQLLTETEYRDCRERYGNAFKASMGAEAIKKLLEEI 182 Query: 193 DLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPL 252 +LE+ +LR+EL E + K + + +R++++EAF +SGN+PEWMIL V+PV+ P+LRP+ Sbjct: 183 NLEELARELRQELKEVTGQRKIRAI-RRLEVVEAFRKSGNRPEWMILEVIPVISPELRPM 241 Query: 253 VPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRR 312 V LDGGRFATSDLNDLYRRVINRNNRLKRLLDL APDIIVRNEKRMLQEAVDAL+DNGRR Sbjct: 242 VQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEAVDALIDNGRR 301 Query: 313 GRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKM 372 GR +TG RPLKSL+DM+KGKQGRFRQNLLGKRVDYSGRSVI VGP L LHQCGLPK+M Sbjct: 302 GRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELHLHQCGLPKEM 361 Query: 373 ALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRL 432 ALELFKPF+ +L G A IK+AK+MVER VW++L+EVI+EHPVLLNRAPTLHRL Sbjct: 362 ALELFKPFVMKRLVNDGYAHNIKSAKRMVERVRPEVWEVLEEVIKEHPVLLNRAPTLHRL 421 Query: 433 GIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILS 492 GIQAFEPVL+EG+AIQ+HP+VC AYNADFDGDQMAVHVPL+ EAQ EAR LM+S+NNIL+ Sbjct: 422 GIQAFEPVLVEGRAIQIHPMVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLSSNNILN 481 Query: 493 PANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRI 552 P +G P+ +P+QD+VLG+YY+T + GEG P+EA Y + SLHA VKVR+ Sbjct: 482 PKDGRPVAIPTQDMVLGIYYLTVEKQGVPGEGKAFKDPEEAVMAYYNNAVSLHAAVKVRM 541 Query: 553 TEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRIL 612 + +TTVGR I ++P+ L NQ + KK +SK+++ CYR L Sbjct: 542 PGMGR------------IETTVGRIIFNEVIPREL--GYYNQVIDKKVLSKIVDDCYRKL 587 Query: 613 GLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGL 672 G T D I GF +A R+G ++GI D+ IP +K EI+ EAE +V ++++Q++ GL Sbjct: 588 GFSATSKLLDGIKKLGFTFATRAGVTIGIQDITIPARKKEILKEAEQQVEKVEQQYRRGL 647 Query: 673 VTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARG 732 +T ERY KVI IW A V+ A+++ L FN +YMMA+SGARG Sbjct: 648 ITEEERYRKVIGIWNDATKEVTDALIETL---------------DKFNPVYMMANSGARG 692 Query: 733 SAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTAN 792 + QIRQLAGMRGLMA P G II+ PI ANFREGL VL+YFISTHGARKGLADTAL+TA+ Sbjct: 693 NIQQIRQLAGMRGLMADPSGRIIDLPIKANFREGLTVLEYFISTHGARKGLADTALRTAD 752 Query: 793 SGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPG 852 SGYLTRRLVDVAQD++V E DCGT +GI +T + +G +V E L DR++GRV EDV P Sbjct: 753 SGYLTRRLVDVAQDVIVREVDCGTGQGIEVTEIKDGNEVIEKLEDRIIGRVALEDVKHPE 812 Query: 853 TADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKG 912 T +IL + E + + VK+RSV++C T +GVC CYGR+LA G ++ G Sbjct: 813 TGEILAFAGEEITESEAAKIVAAGIKKVKIRSVLTCRTRYGVCIKCYGRNLATGRQVDIG 872 Query: 913 EAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGK 972 EA+G+IAAQSIGEPGTQLTMRTFH GG A + +V+ + ++++ + Sbjct: 873 EAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVEELFEARRPKGQAIIAEADG 932 Query: 973 LVITSR---NTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVAN--WDPHTMPV 1027 V E+++ E G TK Y+VPYGA L DG++V G+ + +PH + Sbjct: 933 TVEVREVKGRREIEVTAEDG-TKSVYQVPYGARLKVRDGDRVYAGDELTEGSVNPHDLLK 991 Query: 1028 ITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGND 1087 I V G + + Q ++ V++ R + + G Sbjct: 992 IKGVQGVQIYLLQEVQRVYRLQGVDINDKHIEVMIRQMLRKVKVDEPGDTDLLP---GGL 1048 Query: 1088 VLIPGTDMPAQYFLPGKAI 1106 + I + + Sbjct: 1049 IDIFEFEDENRRIKNLGGE 1067 Score = 304 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 142/365 (38%), Positives = 199/365 (54%), Gaps = 6/365 (1%) Query: 1007 DGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAE 1066 G+ + E + + + + + G V D+ +T ++ Sbjct: 776 TGQGIEVTE-IKDGNEVIEKLEDRIIGRVALEDVKHPETGEILAFAGEEITESEAAKIVA 834 Query: 1067 RTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDTLARIP 1125 +R L G + G ++ + V + I G L Sbjct: 835 AGIKKVKIRSVLTCRTRYGVCIKCYGRNLATGRQVDIGEAVGIIAAQSIGEPGTQLTMRT 894 Query: 1126 QESGGT--KDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGS 1183 +GG DIT GLPRV +LFEARRPK AI+AE G V +E KG+R + +T DG+ Sbjct: 895 FHTGGVAGDDITQGLPRVEELFEARRPKGQAIIAEADGTVEV-REVKGRREIEVTAEDGT 953 Query: 1184 DPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRL 1243 +P +L V +G+RV GD +++G PHD+L+++GV V Y++ EVQ VYRL Sbjct: 954 KSV-YQVPYGARLKVRDGDRVYAGDELTEGSVNPHDLLKIKGVQGVQIYLLQEVQRVYRL 1012 Query: 1244 QGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYS 1303 QGV INDKHIEV++RQMLRK + G +D L G ++ + NR ++ G AT Sbjct: 1013 QGVDINDKHIEVMIRQMLRKVKVDEPGDTDLLPGGLIDIFEFEDENRRIKNLGGEPATAK 1072 Query: 1304 RDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGY 1363 LLGITKASLAT+SF+SAASFQETTRVLTEAA+ GK D L GLKENVI+G+L+PAGTG Sbjct: 1073 PVLLGITKASLATDSFLSAASFQETTRVLTEAAIKGKLDLLLGLKENVIIGKLVPAGTGM 1132 Query: 1364 AYHQD 1368 + +++ Sbjct: 1133 SRYRN 1137 >UniRef50_C9RPE5 DNA-directed RNA polymerase n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RPE5_FIBSS Length = 1432 Score = 1076 bits (2781), Expect = 0.0, Method: Composition-based stats. Identities = 572/1276 (44%), Positives = 796/1276 (62%), Gaps = 78/1276 (6%) Query: 154 LERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETK 213 + Q+ + Y + E K+ + + + ++ E + L + E + Sbjct: 212 FRKSQMESFRTYYNNPEAAQKRDRDKIWLKGLAEAVAEFKVDYEAKHSDFVLADAYEEFR 271 Query: 214 RKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVI 273 K T+ N+P WMIL V+PVLPPDLRPLVPL+GGRFATSDLN+LYRRVI Sbjct: 272 HKYPTEA-------RLFANQPSWMILDVIPVLPPDLRPLVPLEGGRFATSDLNELYRRVI 324 Query: 274 NRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKG 333 NRNNRLK+L+D+ P++I+ NEKRMLQEAVD L D+ RR + + RPLKSLA+++KG Sbjct: 325 NRNNRLKKLIDIRTPNVILCNEKRMLQEAVDQLFDSDRR--TVRAGSARPLKSLAELLKG 382 Query: 334 KQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATT 393 KQGRFR NLLGKRVDYSGRSVI V P LRL QCGLPK+MALEL+KPFI +LE G+ T Sbjct: 383 KQGRFRMNLLGKRVDYSGRSVIVVDPELRLDQCGLPKRMALELYKPFIIQRLEEEGIVYT 442 Query: 394 IKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLV 453 K+AKK V+ VWDIL+++I +HPV+LNRAPTLHRLGIQAF P LIEG AI LHPLV Sbjct: 443 HKSAKKYVDANRPEVWDILEQIIEDHPVMLNRAPTLHRLGIQAFYPKLIEGNAIHLHPLV 502 Query: 454 CAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYM 513 C A+N DFDGDQMAVH+PL+ EAQLE R LM+S+NNIL P++G+PI VP QD+VLGLYY+ Sbjct: 503 CPAFNTDFDGDQMAVHLPLSFEAQLECRVLMLSSNNILHPSSGQPITVPKQDMVLGLYYL 562 Query: 514 TRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKD-- 571 T+ N KGEGM P EA Y +G L+A + +++ +K G + L++ Sbjct: 563 TKPRPNRKGEGMHFYAPAEAISAYENGAVDLNANIYLKLKAGQKIYKGSVEKDIILEEDC 622 Query: 572 ---TTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTG 628 TTVGR I IVP L +N+ L K+ I+ ++ Y G + TV + + + G Sbjct: 623 IIKTTVGRIIFNDIVPPAL--GYINETLNKEFITNSIDNLYHRAGNRVTVDYLNNLKAIG 680 Query: 629 FAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAA 688 F +A ++G S+ + D++IP++K E+++ A E+ +I+ ++ G++T GERYN+ ID+W+ Sbjct: 681 FKWATKAGTSIAVADILIPKEKQELLNAATKEIRKIRALYEDGVITDGERYNQTIDVWSK 740 Query: 689 ANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMA 748 V+ D+L + FN +YMMADSGARG+ I+QLA MRGL Sbjct: 741 TTSNVAAKQWDSLSHDRNG-----------FNPLYMMADSGARGNREYIKQLAAMRGLTQ 789 Query: 749 KP-----DGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDV 803 KP +IE PI + +REGLN ++YFIS+HGARKGLADTALKTA++GYLTRRLVDV Sbjct: 790 KPIKQLGGQEVIENPIKSCYREGLNEMEYFISSHGARKGLADTALKTADAGYLTRRLVDV 849 Query: 804 AQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTL 863 DLV+TE DCGT GI ++ + +G D PL +R+LGR +D+ P T +++V L Sbjct: 850 GLDLVITEKDCGTANGIEVSALKDGDDTVIPLEERLLGRAPVDDIKHPVTGEVIVKAGEL 909 Query: 864 LHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSI 923 ++E+ + + +++RSV++C++ GVCA CYGR L+ G ++ GEA+GV+AA SI Sbjct: 910 VNERDLPKISAAGFEHIRMRSVLTCESRNGVCAKCYGRMLSSGRPVDLGEAVGVLAAHSI 969 Query: 924 GEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELK 983 GEPGT+LT+RTFHIGG S E+ + G IKL ++++ + G+ ++ SR EL Sbjct: 970 GEPGTRLTLRTFHIGGVHSPLTVENCKKAIVDGRIKLEQIETIEHE-GQKIVVSRMGELV 1028 Query: 984 LIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDG 1043 + D G K Y++PYG+++ G+ V G+ + WDP+ P+IT V+G V F +M+D Sbjct: 1029 IFDNTGINKGRYQIPYGSIMHVGNNAIVKKGDCMFEWDPYNSPIITNVAGNVVFFNMVDK 1088 Query: 1044 QTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPG 1103 Q G L PA+ I D +G V + LP Sbjct: 1089 Q------------------------HGKNKLHPAIIINDDRGEKVGY--------FMLPD 1116 Query: 1104 KAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIV 1163 AI ++ G +++SG +A++P+ +G T+DITGGLPR+A++FEAR P+ A +A + G+V Sbjct: 1117 GAIPAVKQGDKVASGQVIAKLPRAAGKTRDITGGLPRIAEIFEARVPRNKAFIAPVDGLV 1176 Query: 1164 SFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRL 1223 +G E + + +VI ++G + + +P L V EG+RV G IS+G PHDIL + Sbjct: 1177 KYGNEVRNYQEIVIQQMNGYE-MKMFVPLGIHLIVNEGDRVRAGQKISEGCVDPHDILDI 1235 Query: 1224 RGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYS 1283 G ++VNEVQ VYRLQGV I DKHIE +VRQM+RK I ++G SDFL GE++ Sbjct: 1236 LGPEQAELHLVNEVQAVYRLQGVAIADKHIECVVRQMMRKVRITDSGDSDFLPGEEITKD 1295 Query: 1284 RVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDE 1343 ++ N L A GK ATY LLGITKASLAT+SFISAASFQET ++LT A++ G+ D Sbjct: 1296 SLRTENDRLIALGKAIATYQPMLLGITKASLATDSFISAASFQETQKILTRASIEGRVDP 1355 Query: 1344 LRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAP-----------QVTAEDASAS 1392 L GLKENVI+GRLIP GTG + +D + +E++ S Sbjct: 1356 LMGLKENVIIGRLIPCGTGARHLRDAQVIDVDADEMEERSRYLNAVSSFVNAVSENSETS 1415 Query: 1393 LA-ELLNAGLGGSDNE 1407 ++ + + S+ E Sbjct: 1416 TQIQMQDNEIDTSNEE 1431 Score = 202 bits (513), Expect = 9e-50, Method: Composition-based stats. Identities = 115/214 (53%), Positives = 163/214 (76%), Gaps = 2/214 (0%) Query: 19 AIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRL 78 I I LASP+ IR WS+GEV KPETINYR+FKPE+DGLFC +IFGP+K++EC CGKYKR+ Sbjct: 6 GISIHLASPEQIRFWSYGEVTKPETINYRSFKPEKDGLFCEKIFGPIKNWECNCGKYKRI 65 Query: 79 KHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERV 138 +++GV+C++CGVEVT +KVRRERMGHIEL AH WF+++ P IG LL++ +D++ + Sbjct: 66 RYKGVVCDRCGVEVTHSKVRRERMGHIELVCSLAHTWFVRNQPCVIGALLNLNTKDLDHI 125 Query: 139 LYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQEC 198 +Y+E YVVI+ G TNLE+ ++ EE+ + ++E G EF AKMGA AI+ LL S+DL + Sbjct: 126 IYYEKYVVIDPGTTNLEKNSLIDEEEKQNLIDE-GREFVAKMGAAAIKQLLDSLDLTKLS 184 Query: 199 EQLREELNETNSETKRKKLTKRIKLLEAFVQSGN 232 E+LR + + S+TK+ + R+K++EAF +S Sbjct: 185 EELRLQAT-SKSKTKQDEAVNRLKVVEAFRKSQM 217 >UniRef50_A5N4P0 DNA-directed RNA polymerase subunit beta' n=5 Tax=Bacteria RepID=RPOC_CLOK5 Length = 1174 Score = 1056 bits (2729), Expect = 0.0, Method: Composition-based stats. Identities = 563/1117 (50%), Positives = 771/1117 (69%), Gaps = 47/1117 (4%) Query: 13 KTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLC 72 + FDA++I LAS + IR WS GEVKKPETINYRT KPERDGLFC RIFGP KD+EC C Sbjct: 3 ELNNFDALQIGLASTEKIREWSRGEVKKPETINYRTLKPERDGLFCERIFGPQKDWECHC 62 Query: 73 GKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPL 132 GKYKR++++G++C++CGVEVT+ KVRRERMGHIELA+P +HIW+ K +PSR+GL+LDM Sbjct: 63 GKYKRIRYKGIVCDRCGVEVTKAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDMSP 122 Query: 133 RDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGD-EFDAKMGAEAIQALLKS 191 R +E+VLYF SYVV++ T L ++Q+LTE++Y +A++++G+ F A MGAE+++ LL+ Sbjct: 123 RALEKVLYFASYVVLDPKETQLLKKQLLTEKEYREAVDKYGEQNFVASMGAESVKKLLEE 182 Query: 192 MDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRP 251 +DLEQ L+E+L + K+ ++ +R++++E+F +SGN+PEWM++ V+PV+PPDLRP Sbjct: 183 IDLEQLSLVLKEDLKNSTG-QKKIRIIRRLEVVESFRKSGNRPEWMVIDVIPVIPPDLRP 241 Query: 252 LVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGR 311 +V LDGGRFATSDLNDLYRRVINRNNRLK+LLDL APDIIVRNEKRMLQEAVDAL+DNGR Sbjct: 242 MVQLDGGRFATSDLNDLYRRVINRNNRLKKLLDLGAPDIIVRNEKRMLQEAVDALIDNGR 301 Query: 312 RGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKK 371 RGR +TG RPLKSL+DM+KGKQGRFRQNLLGKRVDYSGRSVI VGP L+++QCGLPK+ Sbjct: 302 RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKMYQCGLPKE 361 Query: 372 MALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHR 431 MALELFKPF+ KL RGLA IK+AK+MVER +A VWD+L+EVI +HPVLLNRAPTLHR Sbjct: 362 MALELFKPFVMKKLVERGLAHNIKSAKRMVERVQAQVWDVLEEVISDHPVLLNRAPTLHR 421 Query: 432 LGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNIL 491 LGIQAF+PVL+EG+AI+LHPL C AYNADFDGDQMAVHVPL++EAQ EAR LM++ +NIL Sbjct: 422 LGIQAFQPVLVEGRAIKLHPLSCTAYNADFDGDQMAVHVPLSVEAQSEARFLMLAAHNIL 481 Query: 492 SPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVR 551 P++G+P++VP+QD+VLG YY+T + AKGEG + P E Y+ ++A++KV+ Sbjct: 482 KPSDGKPVVVPTQDMVLGSYYLTVEREGAKGEGRYFSFPDEVIMAYQLKQIDINAKIKVK 541 Query: 552 ITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSI-----------VNQALGKKA 600 +T K +G+ ++ D T G+ I VP+ L + ++ + KK Sbjct: 542 MT---KIIDGKYISGII--DATAGKIIFNECVPQDLGFIDRSKPGNEFKLEIDFLVAKKN 596 Query: 601 ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAE 660 + K++N CY G T I D+I G+ Y+ SG +V DM +PE K ++SE++A Sbjct: 597 LGKIINKCYMKHGATKTSIMLDKIKARGYHYSTISGITVSTSDMEVPEAKKRLLSESDAA 656 Query: 661 VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFN 720 V +I++ ++ G ++ ERY +VI+ W + V+ +M+NL FN Sbjct: 657 VDKIEKMYRRGFISEDERYQRVIERWTKTTEDVADELMNNL---------------DKFN 701 Query: 721 SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR 780 I+MMADSGARGS +QI+QLAGMRGLMA P G IIE PI A+FREGL+VL+YFISTHGAR Sbjct: 702 PIFMMADSGARGSKSQIKQLAGMRGLMANPSGKIIELPIRASFREGLDVLEYFISTHGAR 761 Query: 781 KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVL 840 KG ADTALKTA+SGYLTRRLVDV+QD++V E+DCGT+EG ++ + EG +V E L +R+ Sbjct: 762 KGNADTALKTADSGYLTRRLVDVSQDVIVREEDCGTYEGYDVSEIKEGNEVIESLSERLT 821 Query: 841 GRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYG 900 GR +AED++ P I+VP+N+ + + D +E + + VK+RSV +C + GVC+ CYG Sbjct: 822 GRYSAEDIIDPNNHQIIVPKNSYMDSKLADRIEASGIKKVKIRSVFTCKSRHGVCSKCYG 881 Query: 901 RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL 960 ++A I+ GE++G+IAAQSIGEPGTQLTMRTFH GG A + +V+ + Sbjct: 882 MNMATAQKIDIGESVGIIAAQSIGEPGTQLTMRTFHTGGVAGSDITQGLPRVEELFEARK 941 Query: 961 SNVKSVVNSSGKLVITSRNTELK--LIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVA 1018 ++V+ V + + + + +Y +P+G+ + +G+ ++ G+ V Sbjct: 942 PKGLAIVSEVSGTVKMEETKKKRSVSVITDNGEEVTYDIPFGSRIKVSNGDLISAGDEVT 1001 Query: 1019 N--WDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRP 1076 +PH + I V G + + Q ++ VV+ R Sbjct: 1002 EGSVNPHDILRIKGVQGVKNYLLSEVQKVYRLQGVDINDKHLEVVIRQMTRKIKI----- 1056 Query: 1077 ALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGV 1113 + G+ L+PGT + F A V+ G Sbjct: 1057 -----EESGDTELLPGTMIDIFDFEEENARVEASGGS 1088 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 136/366 (37%), Positives = 190/366 (51%), Gaps = 5/366 (1%) Query: 1017 VANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRP 1076 + + + ++G D+ID + + + S + +R Sbjct: 806 IKEGNEVIESLSERLTGRYSAEDIIDPNNHQIIVPKNSYMDSKLADRIEASGIKKVKIRS 865 Query: 1077 ALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDTLARIPQESGGT--KD 1133 G G +M + V + I G L +GG D Sbjct: 866 VFTCKSRHGVCSKCYGMNMATAQKIDIGESVGIIAAQSIGEPGTQLTMRTFHTGGVAGSD 925 Query: 1134 ITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKW 1193 IT GLPRV +LFEAR+PK AI++E+SG V + K + VIT D + IP Sbjct: 926 ITQGLPRVEELFEARKPKGLAIVSEVSGTVKMEETKKKRSVSVIT--DNGEEVTYDIPFG 983 Query: 1194 RQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHI 1253 ++ V G+ + GD +++G PHDILR++GV V Y+++EVQ VYRLQGV INDKH+ Sbjct: 984 SRIKVSNGDLISAGDEVTEGSVNPHDILRIKGVQGVKNYLLSEVQKVYRLQGVDINDKHL 1043 Query: 1254 EVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKAS 1313 EV++RQM RK I +G ++ L G ++ + N +EA+G A LLGITKA+ Sbjct: 1044 EVVIRQMTRKIKIEESGDTELLPGTMIDIFDFEEENARVEASGGSAAQGRVALLGITKAA 1103 Query: 1314 LATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRR 1373 LATESF+SAASFQETTRVLT+AA+ GK D L GLKENVI+G+LIPAGTG ++ Sbjct: 1104 LATESFLSAASFQETTRVLTDAAIKGKIDPLLGLKENVIIGKLIPAGTGMTRYRSIKINT 1163 Query: 1374 AAGEAP 1379 Sbjct: 1164 ENEVQE 1169 >UniRef50_A8Z5T2 DNA-directed RNA polymerase subunit beta' n=30 Tax=Bacteroidetes RepID=RPOC_SULMW Length = 1464 Score = 1049 bits (2713), Expect = 0.0, Method: Composition-based stats. Identities = 614/1466 (41%), Positives = 886/1466 (60%), Gaps = 169/1466 (11%) Query: 19 AIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKR- 77 I + ++SP+ I S+GE+ KPETINYRT KPER+GLFC +IFGP+KDYEC CGKYK+ Sbjct: 15 KISLRISSPEEILKDSYGEIIKPETINYRTNKPERNGLFCEKIFGPIKDYECFCGKYKKK 74 Query: 78 --------------LKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSR 123 LK +G+ C +CGVE+T+ VRR RMGHI L P HIW +S P++ Sbjct: 75 LYKEIIRLRQLNKELKVKGLFCNRCGVEITKNTVRRTRMGHINLVVPIVHIWGFRSTPNK 134 Query: 124 IGLLLDMPLRDIERVLYFESYVVIEGGMTN------LERQQILTEEQYLDALEEFG---- 173 IG +L + + ++ ++Y+E YVVI+ G+ N +++ +LTEE+Y L + Sbjct: 135 IGSILGLSSQQLDMIIYYERYVVIQPGIANSYNNLSIKKLDLLTEEEYTYILNKIPIGNK 194 Query: 174 -------DEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEA 226 ++F AKMGAE ++ LL +DLE L++E+ S+ ++ +L KR+ ++E Sbjct: 195 YLYDNDPNKFIAKMGAECLEELLIRVDLEVLLSDLKKEIKNEESKQRKIELFKRLNVVEC 254 Query: 227 FV---QSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLL 283 F+ + GNK E +IL VLPV+PP+LRPLVPLDGG +A+SDLND YRR++ RNNRLKRL+ Sbjct: 255 FIEGKKKGNKIESIILKVLPVIPPELRPLVPLDGGGYASSDLNDFYRRILIRNNRLKRLI 314 Query: 284 DLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLL 343 ++AP+II+RNEKRMLQEAVD+LLDN ++ A+ + RPLKSL+D +KGKQGRFRQNLL Sbjct: 315 HISAPEIILRNEKRMLQEAVDSLLDNSKKILAVKSESNRPLKSLSDSLKGKQGRFRQNLL 374 Query: 344 GKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVER 403 GKRVDYS RSVI VGP L+LH+CGLPK++A E++KPF+ KL R + T+K+AKK++ + Sbjct: 375 GKRVDYSARSVIVVGPKLKLHECGLPKEIAAEIYKPFLIRKLLERKIVRTVKSAKKLISK 434 Query: 404 EEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDG 463 ++ ++WDIL +++ HPVLLNRAPTLHRLGIQ+F+P LIEGKAI LHPLVC+A+NADFDG Sbjct: 435 KDPIIWDILKYLLKGHPVLLNRAPTLHRLGIQSFQPKLIEGKAILLHPLVCSAFNADFDG 494 Query: 464 DQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNA--- 520 DQMAVH+PL+ EA LEA+ LM+++ NIL+PANG PI VPSQD+VLGLYYMT++ + Sbjct: 495 DQMAVHLPLSNEAILEAKLLMLASQNILNPANGYPITVPSQDMVLGLYYMTKELKSTYES 554 Query: 521 --KGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAI 578 KGEGM + +E E Y + + +HA +KV++ E + + + TTVGR + Sbjct: 555 KIKGEGMCFSSLEEVEIAYNNKVVEIHAIIKVKVKILE-----NIGLISKIIKTTVGRVL 609 Query: 579 LWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGAS 638 ++VP + +N+ L K++ K++N + T F D+I G+ +A + G S Sbjct: 610 FNIVVPPKV--GYINKLLTNKSLRKIINYILYNTNIPTTAKFLDKIKDLGYYHAFKGGLS 667 Query: 639 VGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMM 698 ++D+ IP++K ++ A +V+ +++ + GL+T ERYN++IDIW N +++ ++ Sbjct: 668 FNLNDISIPKEKKSLVKRAIEKVSLVKDNYNLGLITNNERYNQIIDIWTNTNVSLTEKVI 727 Query: 699 DNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDG------ 752 + ++ + FNS+YMM DSGAR S QIRQL+GMRGLMAKP Sbjct: 728 NYMRK-----------SKQGFNSVYMMLDSGARSSKEQIRQLSGMRGLMAKPQKTSSLGS 776 Query: 753 SIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTED 812 IIE PI +NF EGL++L+YFISTHGARKGLADTALKTA++GYLTRRLVD AQD+++ ED Sbjct: 777 EIIENPILSNFLEGLSILEYFISTHGARKGLADTALKTADAGYLTRRLVDSAQDVIIQED 836 Query: 813 DCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLL 872 DC T GI ++ V + + E L RVLGR+ ++ P ++L+ + ++ E+ +L+ Sbjct: 837 DCKTLLGIKISAVKKKEKIIETLSSRVLGRIALNNIYDPTNNNVLIKSSQMIDEKNINLI 896 Query: 873 EENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTM 932 E+ S+D ++VRS ++C + G+C CYGR+LA G +I KGEAIGVIAAQSIGEPGTQLT+ Sbjct: 897 EKASIDTIEVRSPLTCKSKTGICRKCYGRNLANGLMIQKGEAIGVIAAQSIGEPGTQLTL 956 Query: 933 RTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRT- 991 RTFH+GG A S I+ K G I+ +++ V N ++ SR++E++L++ Sbjct: 957 RTFHVGGTAGNIYEYSKIKAKYDGIIEYEDIQVVKN-----LVISRSSEIRLLNNHKDKV 1011 Query: 992 -KESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQT 1050 K+PYGA L + + V + + +WDP+ +I E +G +R++++ + Sbjct: 1012 ILMKKKIPYGAKLYVSNKQLVKKNDIICSWDPYNAVIIAEFTGKIRYSNI--------ER 1063 Query: 1051 DELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLE 1110 DE TG + + P LKIV+ + + Y +P A + + Sbjct: 1064 DEQTGFKVISERKT-----------PTLKIVNKKNEIL--------KSYNIPVGAHLVVN 1104 Query: 1111 DGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARR--------------------- 1149 DG I+ G L +IP + + DITGGLPR+++LFEAR Sbjct: 1105 DGDIINEGSILIKIPIKDLKSGDITGGLPRLSELFEARNDDDDDDYYDSDYYDYYDYSDD 1164 Query: 1150 ---------PKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE 1200 E + + + + Sbjct: 1165 DDDYDDYDDYYYNYDDDENDNDNDYDYDYDYDYDYDSDSHNSYSHNSYSPSSNDNYDYDY 1224 Query: 1201 GERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM 1260 + G + ++IL ++G+ A + ++NE+Q+VYR QGVKINDKH EVIVRQM Sbjct: 1225 DSDSDYDSDYDYGDISLNEILDIKGLRAAQKKLINEIQEVYRSQGVKINDKHFEVIVRQM 1284 Query: 1261 LRKATIVNAGSSDFLE---------------------------------GEQVEYSRVKI 1287 +K I+ +G + FLE G+ V + +K Sbjct: 1285 TQKVEIIKSGDTSFLEGNIEYTDVFLEENKRILNMKFIEESGDSKKFFKGQLVNFHELKK 1344 Query: 1288 ANRELEANGKVGATYS--------RDLLGITKASLATESFISAASFQETTRVLTEAAVAG 1339 N L+ + K + + GITKA+L T+SF+SAASFQETT+VL EAA++ Sbjct: 1345 ENYLLKLSNKNKILFRDVITAISKPIIQGITKAALQTKSFLSAASFQETTKVLYEAAISN 1404 Query: 1340 KRDELRGLKENVIVGRLIPAGTGYAY 1365 K D L GLKENVI+G IPAGTG Sbjct: 1405 KTDYLNGLKENVILGNKIPAGTGLKK 1430 >UniRef50_A9KJL3 DNA-directed RNA polymerase subunit beta' n=170 Tax=Bacteria RepID=RPOC_CLOPH Length = 1255 Score = 1032 bits (2668), Expect = 0.0, Method: Composition-based stats. Identities = 571/1189 (48%), Positives = 767/1189 (64%), Gaps = 55/1189 (4%) Query: 6 KFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPV 65 + + K +DAIKI LASP+ IR WS GEV+KPETINYRT KPE+DGLFC +IFGP Sbjct: 4 EMINESVKDITYDAIKIGLASPEKIREWSRGEVRKPETINYRTLKPEKDGLFCEKIFGPN 63 Query: 66 KDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIG 125 KD+EC CGKYK+++++GV+C++CGVEVT+ VRRERMGHIELA+P +HIW+ K +PSR+G Sbjct: 64 KDWECHCGKYKKIRYKGVVCDRCGVEVTKASVRRERMGHIELAAPVSHIWYFKGIPSRMG 123 Query: 126 LLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAI 185 L+LD+ R +E+VLYF SY+V++ G T+L+ +Q+L E+++ +A +++GD F MGAEAI Sbjct: 124 LILDLSPRTLEKVLYFASYIVLDKGTTDLQYKQVLNEKEFREAYDKYGDRFRVGMGAEAI 183 Query: 186 QALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVL 245 LL+++DLE+E + L+ L E+ KR ++ KR++++EAF +SGNKPEWMI+TV+PV+ Sbjct: 184 MELLEAIDLEKESKDLKRGLKESTG-QKRARIIKRLEVVEAFRESGNKPEWMIMTVVPVI 242 Query: 246 PPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDA 305 PPDLRP+V LDGGRFATSD+NDLYRR+INRNNRLKRLL+L APDIIVRNEKRMLQEAVDA Sbjct: 243 PPDLRPMVQLDGGRFATSDMNDLYRRIINRNNRLKRLLELGAPDIIVRNEKRMLQEAVDA 302 Query: 306 LLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQ 365 L+DNGRRGR +TG RPLKSL+DM+KGKQGRFRQNLLGKRVDYSGRSVI VGP L+++Q Sbjct: 303 LIDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKIYQ 362 Query: 366 CGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNR 425 CGLPK+MA+ELFKPF+ +L +G A IK+AKKMVER + VWDIL+EVIREHPV+LNR Sbjct: 363 CGLPKEMAIELFKPFVMKELVAKGTAHNIKSAKKMVERLQPEVWDILEEVIREHPVMLNR 422 Query: 426 APTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMM 485 APTLHRLGIQAFEPVL+EGKAI+LHPLVC A+NADFDGDQMAVH+PL++EAQ E R L++ Sbjct: 423 APTLHRLGIQAFEPVLVEGKAIKLHPLVCTAFNADFDGDQMAVHLPLSVEAQAECRFLLL 482 Query: 486 STNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLH 545 S NN+L P++G P+ VPSQD+VLG+YY+T GEG EA Y +G+ SLH Sbjct: 483 SPNNLLKPSDGGPVAVPSQDMVLGIYYLTLQKPGDIGEGKYFKSVNEAILAYENGVISLH 542 Query: 546 ARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMI-----------VPKGLPYSIVNQ 594 A +KVR T N E V ++ ++TVGR I I P+ ++ Sbjct: 543 AMIKVRRTGL----NAEGVEESRTIESTVGRFIFNEIISQDLGFVDRSKPENFLALEIDF 598 Query: 595 ALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEII 654 GKK + K+L C G T D I G+ Y+ R+ +V I DM +PE K +II Sbjct: 599 HTGKKQLKKILEKCINTRGATQTAETLDAIKSLGYKYSTRAAMTVSISDMTVPEAKKDII 658 Query: 655 SEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEE 714 AE +V +I + + GL+T ERY VI+ W A+D ++K ++ L Sbjct: 659 ERAEKQVEDIAKNHRRGLMTEEERYKAVIETWKEADDEITKELLSGL------------- 705 Query: 715 KQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFI 774 +N+I+MMADSGARGS QI+QLAGMRGLMA G IE PI ANFREGL+VL+YFI Sbjct: 706 --DKYNNIFMMADSGARGSDKQIKQLAGMRGLMADTSGKTIELPIKANFREGLDVLEYFI 763 Query: 775 STHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDC--GTHE--GIMMTPVIEGGD 830 S HGARKGL+DTAL+TA+SGYLTRRLVDV+QDL++ E DC GT E G+ + ++G + Sbjct: 764 SAHGARKGLSDTALRTADSGYLTRRLVDVSQDLIIREVDCGEGTDEIPGMEIKAFMDGKE 823 Query: 831 VKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLL-----EENSVDAVKVRSV 885 V E L DR++GR E + +++V +N ++ + + E+ +K+R+V Sbjct: 824 VIEGLEDRIIGRYACETIYD-DNGELIVKKNHIITPKRAARIVASKAFEDPNATIKIRTV 882 Query: 886 VSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAA 945 +SC + GVCA CYG ++A G + GEA+G+IAAQSIGEPGTQLTMRTFH GG A Sbjct: 883 LSCKSHIGVCAKCYGANMATGEAVQVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDI 942 Query: 946 AESSIQVKNKGSIKLSNVKSVVNSSGKLVIT---SRNTELKLIDEFGRTKES--YKVPYG 1000 + +V+ + +++ G V + E+ + T ES Y +PYG Sbjct: 943 TQGLPRVEELFEARKPKGLAIIAEFGGTVTIKDTKKKREVIVTRTSNDTLESKAYLIPYG 1002 Query: 1001 AVLAKGDGEQVAGGETVAN--WDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSS 1058 + + D + + G+ + +PH + I V + + Q E+ Sbjct: 1003 SRIKVMDEQVIEAGDELTEGSVNPHDILKIKGVRAVQDYMIQEVQRVYRLQGVEINDKHI 1062 Query: 1059 LVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSG 1118 V++ + G V I + + ++ +G Q+ G Sbjct: 1063 EVIVRQM---LKKVRVENNGDAEFLPGTMVDILEYNDVNESLAAKG--LEQAEGKQVMLG 1117 Query: 1119 DTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGK 1167 T A + S + +V L EA + L + V GK Sbjct: 1118 ITKASLATNSFLSAASFQETTKV--LTEAAIKGKIDPLIGLKENVIIGK 1164 Score = 302 bits (772), Expect = 8e-80, Method: Composition-based stats. Identities = 147/392 (37%), Positives = 205/392 (52%), Gaps = 12/392 (3%) Query: 984 LIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDG 1043 +I E + + ++P + A DG++V G +I + + D + Sbjct: 797 IIREVDCGEGTDEIPGMEIKAFMDGKEVIEG--------LEDRIIGRYACETIYDDNGEL 848 Query: 1044 QTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPG 1103 + +V + E +R L G G +M + Sbjct: 849 IVKKNHIITPKRAARIVASKAFEDPNATIKIRTVLSCKSHIGVCAKCYGANMATGEAVQV 908 Query: 1104 KAIVQLEDGVQI-SSGDTLARIPQESGGT--KDITGGLPRVADLFEARRPKEPAILAEIS 1160 V + I G L +GG DIT GLPRV +LFEAR+PK AI+AE Sbjct: 909 GEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVEELFEARKPKGLAIIAEFG 968 Query: 1161 GIVSFGKETKGKRRLVI-TPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHD 1219 G V+ K + +V T D + +IP ++ V + + +E GD +++G PHD Sbjct: 969 GTVTIKDTKKKREVIVTRTSNDTLESKAYLIPYGSRIKVMDEQVIEAGDELTEGSVNPHD 1028 Query: 1220 ILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQ 1279 IL+++GV AV Y++ EVQ VYRLQGV+INDKHIEVIVRQML+K + N G ++FL G Sbjct: 1029 ILKIKGVRAVQDYMIQEVQRVYRLQGVEINDKHIEVIVRQMLKKVRVENNGDAEFLPGTM 1088 Query: 1280 VEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAG 1339 V+ N L A G A + +LGITKASLAT SF+SAASFQETT+VLTEAA+ G Sbjct: 1089 VDILEYNDVNESLAAKGLEQAEGKQVMLGITKASLATNSFLSAASFQETTKVLTEAAIKG 1148 Query: 1340 KRDELRGLKENVIVGRLIPAGTGYAYHQDRMR 1371 K D L GLKENVI+G+LIPAGTG ++++ Sbjct: 1149 KIDPLIGLKENVIIGKLIPAGTGMKHYRNVKL 1180 >UniRef50_B0S2E5 DNA-directed RNA polymerase subunit beta' n=47 Tax=Clostridia RepID=RPOC_FINM2 Length = 1202 Score = 1022 bits (2643), Expect = 0.0, Method: Composition-based stats. Identities = 541/1107 (48%), Positives = 736/1107 (66%), Gaps = 40/1107 (3%) Query: 15 EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74 F+A+KI LASPD IR WS+GEVKKPETINYRT KPE++GLFC +IFGP KDYEC CGK Sbjct: 5 NTFEAMKIGLASPDKIRQWSWGEVKKPETINYRTLKPEKEGLFCEKIFGPTKDYECNCGK 64 Query: 75 YKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRD 134 YKR++++G++CEKCGVEVT++KVRRERMGHIELA+P +HIW+ K +PSR+GLLLDM R Sbjct: 65 YKRIRYKGIVCEKCGVEVTKSKVRRERMGHIELATPVSHIWYFKGIPSRMGLLLDMSPRA 124 Query: 135 IERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDE--FDAKMGAEAIQALLKSM 192 +E+VLYF S+VVI+ G T+L +Q+LTE++Y + +++ ++ F AKMGAEAI+ LL+ + Sbjct: 125 LEKVLYFASFVVIDPGKTDLYEKQLLTEQEYEEYCDKYEEDVDFRAKMGAEAIKELLQKI 184 Query: 193 DLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPL 252 DL++E + L E + + K ++ +R++++EAF++S N P WMI+ V+PV+PPD+RP+ Sbjct: 185 DLQEEYKNLTETFEGSTGQKKV-RILRRLEVVEAFIESKNDPSWMIMDVIPVIPPDIRPM 243 Query: 253 VPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRR 312 V L+GGRFATSDLNDLYRRVINRNNRLKRLLD+ +P+IIVRNEKRMLQEAVDAL+DNGRR Sbjct: 244 VQLEGGRFATSDLNDLYRRVINRNNRLKRLLDIGSPEIIVRNEKRMLQEAVDALIDNGRR 303 Query: 313 GRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKM 372 G+ +TG RPLKSL+DM+KGK GRFRQNLLGKRVDYSGRSVI +GP L+ +QCGLPKKM Sbjct: 304 GKPVTGPGNRPLKSLSDMLKGKSGRFRQNLLGKRVDYSGRSVIVIGPNLKFYQCGLPKKM 363 Query: 373 ALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRL 432 ALELFKPF+ +L R ++ +K AKK+VERE VWD+L+++I +HPVLLNRAPTLHRL Sbjct: 364 ALELFKPFVIRELVKREISHNVKNAKKLVERENDKVWDVLEDIIVDHPVLLNRAPTLHRL 423 Query: 433 GIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILS 492 GIQAFEP+L+EGKAI+LHPLVC AYNADFDGDQMAVH+PL+ EAQ EAR LM+STNNIL+ Sbjct: 424 GIQAFEPILVEGKAIKLHPLVCTAYNADFDGDQMAVHLPLSPEAQAEARLLMLSTNNILA 483 Query: 493 PANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRI 552 P +G+PI PSQD+VLG +YMT KGEG++ E Y +L VKVR Sbjct: 484 PKDGKPITTPSQDMVLGSFYMTTRKEGQKGEGLIFKDIDEMMLAYAMHYVTLQTIVKVRR 543 Query: 553 TEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQA---------LGKKAISK 603 D ++V ++TVGR I +P+ L N+ + KK +SK Sbjct: 544 NSVNNDGTSKIV------ESTVGRFIFNEGIPQDLGMVNRNEDPYSLEVDLQVDKKMLSK 597 Query: 604 MLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAE 663 +++ +R G T D I G+ Y+ ++ + D+ IP+ K II +AE + Sbjct: 598 IIDLTFRRYGNIRTAELLDYIKSMGYKYSTIGALTISMGDITIPDSKKGIIEQAEQRIDM 657 Query: 664 IQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIY 723 +Q+ + G +T ERY KVI+IW V++A+M NL + N++ Sbjct: 658 VQDIYLQGDITNEERYKKVIEIWEQCIKDVTRALMTNL---------------PADNNLN 702 Query: 724 MMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGL 783 +MA SGARGS QIRQL GMRGLM+ G+ IE PIT+NFREGL+V ++FISTHG+RKGL Sbjct: 703 IMAVSGARGSENQIRQLGGMRGLMSDTAGNTIEIPITSNFREGLSVQEFFISTHGSRKGL 762 Query: 784 ADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRV 843 +DTAL+TA+SGYLTRRLVDV+QD+++TEDDCGT E I+ + +G E L+ R++GR Sbjct: 763 SDTALRTADSGYLTRRLVDVSQDVIITEDDCGTDEYIVAKEIKDGNRQVEDLKSRIIGRY 822 Query: 844 TAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDL 903 ED+L T +I+V +N +++E + +E + VKVRSV+ C GVCA CYGR+L Sbjct: 823 AFEDILDLDTGEIIVHKNDMINEAIAERIESKGIKEVKVRSVLGCKMKHGVCAKCYGRNL 882 Query: 904 ARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNV 963 A G +N GEA+G+IAAQSIGEPGTQLTMRTFH GG A +V+ + Sbjct: 883 ATGKPVNIGEAVGIIAAQSIGEPGTQLTMRTFHSGGIAGVGITSGLPRVEELFEARKPKG 942 Query: 964 KSVVNSSGKLVITSRNTEL--KLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVAN-- 1019 + + V N + ++ ++ Y++PYGA + +G+ V GE + Sbjct: 943 LAYITEIEGTVKIQENKKRNDVIVTSEDGEEQVYQIPYGAHIRVNEGDHVEKGEPLTEGS 1002 Query: 1020 WDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALK 1079 +P + + G + + Q ++ +++ ++ + Sbjct: 1003 INPQDILRVNGAEGVRDYIIREVQKVYRLQGVDIDDKHIEIIIRQMMSKIKVEESGDSGF 1062 Query: 1080 IVDAQGNDVLIPGTDMPAQYFLPGKAI 1106 + G+ V M + + Sbjct: 1063 L---SGSVVDARDFKMTNEQLIKEGKT 1086 Score = 306 bits (783), Expect = 5e-81, Method: Composition-based stats. Identities = 150/387 (38%), Positives = 207/387 (53%), Gaps = 8/387 (2%) Query: 1009 EQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERT 1068 E + E + + + + + + G F D++D T + ++ + + Sbjct: 797 EYIVAKE-IKDGNRQVEDLKSRIIGRYAFEDILDLDTGEIIVHKNDMINEAIAERIESKG 855 Query: 1069 AGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDTLARIPQE 1127 +R L G G ++ + V + I G L Sbjct: 856 IKEVKVRSVLGCKMKHGVCAKCYGRNLATGKPVNIGEAVGIIAAQSIGEPGTQLTMRTFH 915 Query: 1128 SGGTKD--ITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDP 1185 SGG IT GLPRV +LFEAR+PK A + EI G V +E K + +++T DG + Sbjct: 916 SGGIAGVGITSGLPRVEELFEARKPKGLAYITEIEGTVKI-QENKKRNDVIVTSEDGEEQ 974 Query: 1186 YEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQG 1245 IP + V EG+ VE+G+ +++G P DILR+ G V YI+ EVQ VYRLQG Sbjct: 975 V-YQIPYGAHIRVNEGDHVEKGEPLTEGSINPQDILRVNGAEGVRDYIIREVQKVYRLQG 1033 Query: 1246 VKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRD 1305 V I+DKHIE+I+RQM+ K + +G S FL G V+ K+ N +L GK AT + Sbjct: 1034 VDIDDKHIEIIIRQMMSKIKVEESGDSGFLSGSVVDARDFKMTNEQLIKEGKTPATGTHS 1093 Query: 1306 LLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAY 1365 L+GITKASLATESF+SAASFQETTRVLTE ++ GK D L GLKENVI+G+LIPAGTG A Sbjct: 1094 LMGITKASLATESFLSAASFQETTRVLTETSIKGKVDHLIGLKENVIIGKLIPAGTGIAK 1153 Query: 1366 HQDRMRRRAAGEAPAAPQVTAEDASAS 1392 + DR+ G+A + AE A AS Sbjct: 1154 Y-DRIEVDYDGKAE-DDMIEAEKAQAS 1178 >UniRef50_A8YXJ9 DNA-directed RNA polymerase subunit beta' n=25 Tax=Firmicutes RepID=RPOC_LACH4 Length = 1217 Score = 1020 bits (2638), Expect = 0.0, Method: Composition-based stats. Identities = 512/1136 (45%), Positives = 727/1136 (63%), Gaps = 61/1136 (5%) Query: 12 TKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECL 71 +F++++I LASP+ IRSWS+GEVKKPETINYRT KPE+DGLF RIFGP KD+ C Sbjct: 2 IDVNKFESMQIGLASPNKIRSWSYGEVKKPETINYRTLKPEKDGLFDERIFGPTKDWSCA 61 Query: 72 CGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMP 131 CGKYK +++RG++C++CGVEVT +KVRRERMGHIELA+P HIW+ K +PSR+GL+LD+ Sbjct: 62 CGKYKGVRYRGIVCDRCGVEVTSSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLVLDIS 121 Query: 132 LRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKS 191 + +E V+YF +Y+VI+ G T+LE +Q+LTE +Y + ++G+ F+AKMGAEAI+ LLK Sbjct: 122 PKLLEEVIYFAAYIVIDPGDTDLEPKQLLTEAEYREQKAKYGNRFEAKMGAEAIRELLKK 181 Query: 192 MDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRP 251 +DL++E + L++EL +T + KR + +R+ +L+ F SGNKPEWM++ +PV+PPDLRP Sbjct: 182 VDLDKEVKDLKKEL-QTATGQKRTRAIRRLDILDTFKNSGNKPEWMVMDAVPVIPPDLRP 240 Query: 252 LVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGR 311 +V L+GGRFATSDLNDLYRRVINRNNRLKRLLDL AP+IIV+NEKRMLQEAVDAL+DNGR Sbjct: 241 MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPNIIVQNEKRMLQEAVDALIDNGR 300 Query: 312 RGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKK 371 RGR + G RPLKSL+ M+KGKQGRFRQNLLGKRVDYSGRSVI V P L+ +QCG+P+ Sbjct: 301 RGRPVVGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVSPKLKFYQCGVPRP 360 Query: 372 MALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHR 431 MALELFKPF+ +L RG+A+ IK AK+ ++ E+ +WD+L++VI+E PVLLNRAPTLHR Sbjct: 361 MALELFKPFVMHELVKRGIASNIKNAKRKIDSEDDDIWDVLEDVIKERPVLLNRAPTLHR 420 Query: 432 LGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNIL 491 L IQAFEPVL+ GK+I+LHPL C AYNADFDGDQMA+HVPL+ EA E+R LM++ ++IL Sbjct: 421 LSIQAFEPVLVPGKSIRLHPLACEAYNADFDGDQMAIHVPLSDEAVAESRLLMLAAHHIL 480 Query: 492 SPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVR 551 +P +G+PI+ PSQD+VLG Y++T+ +GEGM+ + P EA Y +G H + + Sbjct: 481 APKDGKPIVTPSQDIVLGNYWLTQAERGREGEGMIFSSPAEATVAYENGDIHYHTIIGMS 540 Query: 552 ITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPY---------------------- 589 K + TT G+ + + P Y Sbjct: 541 ADAMPKKPWPQGHEHGIFI-TTYGKLVFNQLFPDDYFYINEPTEENLNNPLDAKYFLGEG 599 Query: 590 ------------SIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGA 637 ++ +S + T Y+ ++ T + D + G+ + SG Sbjct: 600 QDIHDKIDEVGDDLIATPFKSSFLSDSIATIYKYYKVQRTSEYLDDLKKLGYTSSTTSGI 659 Query: 638 SVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAM 697 ++G++D+ + K E +++A +V + +QF+ GL+T ER+++VI IW A D + + Sbjct: 660 TIGMNDVPEIKDKDEKVAKARKQVDIVSKQFRRGLITEQERHDRVISIWNACKDEIQNEI 719 Query: 698 MDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIET 757 + N I +MADSGARG+ + QLAGMRGLMA P+G + E Sbjct: 720 ---------------AQIHSPRNPISIMADSGARGNISNFTQLAGMRGLMATPNGGLFEI 764 Query: 758 PITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTH 817 P+T+NF+EGL+VL+ F+STHGARKG+ DTALKTA SGYLTRRLVDVAQD+++ +DDCGT Sbjct: 765 PVTSNFKEGLSVLELFMSTHGARKGMTDTALKTAQSGYLTRRLVDVAQDVIIRDDDCGTD 824 Query: 818 EGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSV 877 GI ++ ++EG ++ EPL DR++GR TAE V P T + +V R+ ++ E + + V Sbjct: 825 RGITVSAIMEGDEMIEPLFDRLVGRFTAETVKDPKTGEAIVGRDVMMDENMAHKICDAGV 884 Query: 878 DAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHI 937 VK+RS+++CDT GVC CYG +LA G + GEA+G +AAQSIGEPGTQLT+RTFH Sbjct: 885 THVKIRSILTCDTPHGVCRKCYGMNLATGEEVEVGEAVGTVAAQSIGEPGTQLTLRTFHN 944 Query: 938 GGAAS-RAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTE----LKLIDEFGRTK 992 GG A + +V+ + ++ ++ ++ + + ++ + Sbjct: 945 GGVAGAEDITQGLPRVQELFEARNPKGRATISEVDGVIDSIQENPADHTREITVKGKIDT 1004 Query: 993 ESYKVPYGAVLAKGDGEQVAGGE--TVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQT 1050 SY VPY A +A +G+ V G+ T+ + DP + +T+ ++ + Q Sbjct: 1005 RSYSVPYTASVAVSEGDYVHRGDKLTLGSVDPKELIQVTDTLTTEKYILAEVQKAYRMQG 1064 Query: 1051 DELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAI 1106 ++ V+ + D + G + I + + I Sbjct: 1065 VDIADKHVEVLTRQMLQKVRVLDPGETDILP---GEVMDIGQFRDRNKEVIISGGI 1117 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 120/372 (32%), Positives = 184/372 (49%), Gaps = 4/372 (1%) Query: 1017 VANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRP 1076 + D P+ + G + D +T + + + +R Sbjct: 832 IMEGDEMIEPLFDRLVGRFTAETVKDPKTGEAIVGRDVMMDENMAHKICDAGVTHVKIRS 891 Query: 1077 ALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDTLARIPQESGGT---K 1132 L G G ++ + V I G L +GG + Sbjct: 892 ILTCDTPHGVCRKCYGMNLATGEEVEVGEAVGTVAAQSIGEPGTQLTLRTFHNGGVAGAE 951 Query: 1133 DITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPK 1192 DIT GLPRV +LFEAR PK A ++E+ G++ +E IT D +P Sbjct: 952 DITQGLPRVQELFEARNPKGRATISEVDGVIDSIQENPADHTREITVKGKIDTRSYSVPY 1011 Query: 1193 WRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKH 1252 + V EG+ V RGD ++ G P +++++ +YI+ EVQ YR+QGV I DKH Sbjct: 1012 TASVAVSEGDYVHRGDKLTLGSVDPKELIQVTDTLTTEKYILAEVQKAYRMQGVDIADKH 1071 Query: 1253 IEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKA 1312 +EV+ RQML+K +++ G +D L GE ++ + + N+E+ +G + AT +LGITKA Sbjct: 1072 VEVLTRQMLQKVRVLDPGETDILPGEVMDIGQFRDRNKEVIISGGIPATAQSVILGITKA 1131 Query: 1313 SLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRR 1372 +L T SF+SAASFQETTRVLT+A++ GK D L GLKENVI+G++IPAGTG +++ Sbjct: 1132 ALETNSFLSAASFQETTRVLTDASIRGKNDPLLGLKENVIIGKIIPAGTGMPVYRNMEPE 1191 Query: 1373 RAAGEAPAAPQV 1384 + + + Sbjct: 1192 ADVKKPDSVYSI 1203 >UniRef50_Q04E86 DNA-directed RNA polymerase subunit beta' n=228 Tax=cellular organisms RepID=RPOC_OENOB Length = 1233 Score = 1017 bits (2629), Expect = 0.0, Method: Composition-based stats. Identities = 524/1101 (47%), Positives = 724/1101 (65%), Gaps = 58/1101 (5%) Query: 12 TKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECL 71 +F++++I LASP IR WS+GEVKKPETINYRT K ERDGLF RIFGP+KDYEC Sbjct: 3 IDVNKFESMQIGLASPAKIREWSYGEVKKPETINYRTLKAERDGLFDERIFGPIKDYECA 62 Query: 72 CGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMP 131 CGKYKR++++G++C++CGVEVT +KVRRERMGHIELA+P HIW+ K +PSR+GL+LDM Sbjct: 63 CGKYKRIRYKGIVCDRCGVEVTSSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLILDMS 122 Query: 132 LRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFG-DEFDAKMGAEAIQALLK 190 R +E ++YF SYVVI G T LE++Q++TE +Y +++G D FDAKMGAEAI+ LL Sbjct: 123 PRSLEEIIYFASYVVINPGNTPLEKKQLITEAEYRQYQDQYGTDTFDAKMGAEAIKELLA 182 Query: 191 SMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLR 250 +DLE++ ++L+ EL + KR + +R+ ++EAF+QSGNKPEWM++ V+PV+PPDLR Sbjct: 183 EVDLEKQAKELKNELKDATG-QKRTRAVRRLDIVEAFIQSGNKPEWMVMDVVPVIPPDLR 241 Query: 251 PLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNG 310 P+V L+GGRFATSDLNDLYRRVINRNNRLKRLLDL AP IIV+NEKRMLQEAVDAL+DNG Sbjct: 242 PMVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPGIIVQNEKRMLQEAVDALIDNG 301 Query: 311 RRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPK 370 RRGR ++G RPLKSL+ ++KGKQGRFRQNLLGKRVDYSGRSVI VGP+L+++Q GLP+ Sbjct: 302 RRGRPVSGPGNRPLKSLSHLLKGKQGRFRQNLLGKRVDYSGRSVIDVGPFLKMNQMGLPR 361 Query: 371 KMALELFKPFIYGKLEL----RGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRA 426 +MA+ELFKPFIY +L G A +++A+ +VER E VV D+L+EV++EHPVLLNRA Sbjct: 362 QMAVELFKPFIYNRLIELGTENGGANNLRSARCLVERHEDVVQDVLEEVVKEHPVLLNRA 421 Query: 427 PTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMS 486 PTLHRLGIQAFEPVL+ GKA++LHPLV AYNADFDGDQMA+HVPL+ EAQ EAR LM++ Sbjct: 422 PTLHRLGIQAFEPVLVSGKAMRLHPLVTTAYNADFDGDQMAIHVPLSDEAQAEARLLMLA 481 Query: 487 TNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHA 546 ++IL+P +G+PI+ PSQD+ +G YY+T + KGEGM+ + E + ++ LH Sbjct: 482 ASHILAPKDGKPIVAPSQDMTIGNYYLTTEEAGIKGEGMIFSSADEVKMALQNHEVELHT 541 Query: 547 RVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPY----------------- 589 R+ + + ++K + + TTVG+ I I+P PY Sbjct: 542 RIGIAASSFDKAKPFTDHQRARIMVTTVGKVIFNEILPDDFPYINEPKSENFNGIDDRFF 601 Query: 590 -------------SIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSG 636 +N +S ++ Y + T + D + G+ + RSG Sbjct: 602 LDPGTDIVGWFKNESLNGPFKSGFLSDIIAQIYARYQVTRTSVLLDDMKDLGYDISTRSG 661 Query: 637 ASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKA 696 +V + D+ +K E++ EA +VA+I +QF+ GL+T ERY +V W+ A D++ Sbjct: 662 LTVAMSDVTELPEKGEVLKEAHEKVAKITKQFRRGLLTDDERYIQVTQTWSDAQDKIKSM 721 Query: 697 MMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIE 756 ++ + S N I+MM+DSGARG+ + QLAGMRGLMA P+G +IE Sbjct: 722 LIASF---------------DSKNPIFMMSDSGARGNISNFVQLAGMRGLMAAPNGKVIE 766 Query: 757 TPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGT 816 P+TANFREGL+VL+ FISTHGARKG+ DTALKTANSGYLTRRLVDVAQ+++V E+DCGT Sbjct: 767 LPVTANFREGLSVLEMFISTHGARKGMTDTALKTANSGYLTRRLVDVAQEVIVREEDCGT 826 Query: 817 HEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENS 876 G+ ++ +++G +V EPL DR+LGR + V+ P T +++ +N ++ E D + + Sbjct: 827 DRGLDVSAIMDGNEVIEPLYDRILGRYAMKPVIDPKTGEVIAKKNQMIDEHVADQIIDAG 886 Query: 877 VDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFH 936 + V +RS+ +C T+ GVC CYGR++A G I+ GEA+G +AAQSIGEPGTQLTMRTFH Sbjct: 887 IQTVTIRSIFTCRTEHGVCVKCYGRNMATGDIVEVGEAVGTVAAQSIGEPGTQLTMRTFH 946 Query: 937 IGGAA-SRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTE----LKLIDEFGRT 991 GG A S + +V+ + ++ ++ V + + E Sbjct: 947 TGGVALSEDITQGLPRVQEIFEARNPKGRAEISEVTGKVTSIEENPADRTKTVTIEGETD 1006 Query: 992 KESYKVPYGAVLAKGDGEQVAGGETVAN--WDPHTMPVITEVSGFVRFTDMIDGQTITRQ 1049 Y +P A L +G+++ E + DP + ++ + + Q Sbjct: 1007 TREYVLPISARLRVAEGDEIHRSEAINEGPLDPKELIKVSSTLKTENYMLAEVQKVYRMQ 1066 Query: 1050 TDELTGLSSLVVLDSAERTAG 1070 + V++ R Sbjct: 1067 GVGIADKHVEVMVRQMLRKVR 1087 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 136/394 (34%), Positives = 201/394 (51%), Gaps = 11/394 (2%) Query: 1017 VANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRP 1076 + + + P+ + G +ID +T + + V + +R Sbjct: 835 IMDGNEVIEPLYDRILGRYAMKPVIDPKTGEVIAKKNQMIDEHVADQIIDAGIQTVTIRS 894 Query: 1077 ALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDTLARIPQESGG---TK 1132 G V G +M + V I G L +GG ++ Sbjct: 895 IFTCRTEHGVCVKCYGRNMATGDIVEVGEAVGTVAAQSIGEPGTQLTMRTFHTGGVALSE 954 Query: 1133 DITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPK 1192 DIT GLPRV ++FEAR PK A ++E++G V+ +E R +T +D E ++P Sbjct: 955 DITQGLPRVQEIFEARNPKGRAEISEVTGKVTSIEENPADRTKTVTIEGETDTREYVLPI 1014 Query: 1193 WRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKH 1252 +L V EG+ + R + I++GP P +++++ Y++ EVQ VYR+QGV I DKH Sbjct: 1015 SARLRVAEGDEIHRSEAINEGPLDPKELIKVSSTLKTENYMLAEVQKVYRMQGVGIADKH 1074 Query: 1253 IEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKA 1312 +EV+VRQMLRK +++ G +D L GE ++ + + AN + +G+ AT LLGITKA Sbjct: 1075 VEVMVRQMLRKVRVMDPGQTDLLPGELLDIADFRRANAKTILSGQTAATSRPVLLGITKA 1134 Query: 1313 SLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRR 1372 SL T SF+SAASFQETTRVLT+AA+ GK D L GLKENVI+G++IPAGTG A ++ Sbjct: 1135 SLETNSFLSAASFQETTRVLTDAAIRGKNDPLVGLKENVIIGKVIPAGTGVAEYRHIK-- 1192 Query: 1373 RAAGEAPAAPQVTAEDAS--ASLAELLNAGLGGS 1404 E AAP E L + + S Sbjct: 1193 ---DEVVAAPVEPLEKIPTLDELQKAFDKEPASS 1223 >UniRef50_C7GZQ7 DNA-directed RNA polymerase n=2 Tax=Clostridiales RepID=C7GZQ7_9FIRM Length = 1240 Score = 1007 bits (2603), Expect = 0.0, Method: Composition-based stats. Identities = 552/1089 (50%), Positives = 739/1089 (67%), Gaps = 47/1089 (4%) Query: 4 LLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFG 63 + +F K + +EF+++++ LAS + I WS GEV KPETINYRT KPE+DGLFC +IFG Sbjct: 1 MPRFEKEKETVKEFESLRVGLASKEKILEWSRGEVTKPETINYRTLKPEKDGLFCEKIFG 60 Query: 64 PVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSR 123 P KD+EC CGK+K+ +HRG++C+KCGVEVT+ VRRERMGHI+LA P +HIW+ K +PSR Sbjct: 61 PAKDFECSCGKFKKREHRGIVCDKCGVEVTKKDVRRERMGHIKLAGPVSHIWYFKGVPSR 120 Query: 124 IGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALE-----EFGDEFDA 178 + LLLD+P +++E+VLYF SYVV+E G + L + ++ EE++ A E + +F A Sbjct: 121 MSLLLDIPPKNLEKVLYFASYVVLEPGDSGLNYKDVIGEEEFRAASETATGSKSKKKFRA 180 Query: 179 KMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMI 238 +MGA AIQ LL+ +D E+ ++++ E+ E S K KL +R+++ EAF SGNKPEWMI Sbjct: 181 EMGAAAIQELLRDVDPEKIVKEIKGEI-EGTSGQKHTKLARRLEVAEAFRSSGNKPEWMI 239 Query: 239 LTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRM 298 L V+PV+PPDLRP+V LDGGRFATSDLNDLYRRVINRNNRL + +D+ AP II RNE+RM Sbjct: 240 LDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLSKFIDMGAPAIIQRNERRM 299 Query: 299 LQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVG 358 LQEAVD+L+DNGRRG+A++GS RPLKSL+DM+KGKQGRFRQNLLGKRVDYSGRSVI VG Sbjct: 300 LQEAVDSLIDNGRRGKAVSGSGGRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVG 359 Query: 359 PYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIRE 418 P L+ +QCGLPK MALELFK FI KL GLA IK+AKKMVE + VWD+L++VI+E Sbjct: 360 PELKFYQCGLPKMMALELFKTFIMKKLTEEGLAINIKSAKKMVEEYDDAVWDVLEDVIKE 419 Query: 419 HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQL 478 HPV+LNRAPTLHRLGIQAFEPVL+EGKAI+LHPLVC A+NADFDGDQMAVH+PL+LEAQ Sbjct: 420 HPVMLNRAPTLHRLGIQAFEPVLVEGKAIKLHPLVCTAFNADFDGDQMAVHLPLSLEAQA 479 Query: 479 EARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT------RDCVNAKGEGMVLTGPKE 532 EAR LM+STNNIL+P +G PI VP+QD++LG Y++T RD KG+G + +E Sbjct: 480 EARFLMLSTNNILAPKDGSPITVPTQDMILGSYFLTHGGIESRDTEAEKGDGKCFSDHEE 539 Query: 533 AERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYS-- 590 Y G+ +HA+VKVR + D +G+LV ++TVGR IL +P+ L + Sbjct: 540 MLMAYMEGIVGIHAKVKVRRHLNKDDKSGKLV------ESTVGRFILNEKIPQDLGFVNR 593 Query: 591 -------IVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDD 643 V+ K + ++++ CY+ G T I D I GF Y+ ++ I D Sbjct: 594 EEDPYALEVDFLCAKDKLREIIDKCYKKHGNTKTAIMLDYIKEMGFRYSTLGAITISISD 653 Query: 644 MVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQT 703 M IPE K II AE EVA+ E F++GL + ERY KVI+IW A + V+ A+MD+L T Sbjct: 654 MEIPEAKKTIIDAAEDEVAKCDEAFENGLYSKEERYGKVINIWDKATNDVADALMDSLGT 713 Query: 704 ETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANF 763 N++Y+MA SGARGS QIRQ+ GMRGLMA G IE PI ANF Sbjct: 714 ---------------LNNLYIMAHSGARGSKNQIRQIGGMRGLMANATGKTIEIPIKANF 758 Query: 764 REGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMT 823 REGL+VL+YFIST+GARKGLADTAL+TA+SGYLTRRLVDV+ +++VTE+DC T EG+ + Sbjct: 759 REGLSVLEYFISTNGARKGLADTALRTADSGYLTRRLVDVSHNVIVTEEDCNTDEGVYVE 818 Query: 824 PVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVR 883 EG V EPL R+ GR AED+L +I+ +N + + +E+ ++ VK+R Sbjct: 819 AFTEGKQVIEPLAQRITGRTAAEDILD-SDGNIITAKNDEISDDDAKRIEKLGIERVKIR 877 Query: 884 SVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASR 943 SV++C+ GVCA CYGR+LA G +N+GEA+G++AAQSIGEPGTQLTMRTFH GG A Sbjct: 878 SVMTCECKSGVCAKCYGRNLATGEEVNRGEAVGIMAAQSIGEPGTQLTMRTFHTGGVAGS 937 Query: 944 AAAESSIQVKNKGSIKLSN-VKSVVNSSGKLVITSRNTELKL-IDEFGRTKESYKVPYGA 1001 + +V + + + + GK+ R + K + G ++ Y++PYGA Sbjct: 938 DITQGLPRVVELFEARQPKGLAEICRADGKVTDILRQGDGKFEVIVSGEEEQRYEIPYGA 997 Query: 1002 VLAKGDGEQVAGGETVANWDPHTMPVITE--VSGFVRFTDMIDGQTITRQTDELTGLSSL 1059 L+ ++V G+ + + ++ V+G + + +Q ++ Sbjct: 998 RLSVKKDDEVKAGQNITEGPLYPEDILEHVGVTGVYDYLVKEVQKVYKQQGVDINDKHIE 1057 Query: 1060 VVLDSAERT 1068 V++ Sbjct: 1058 VIVSKMLSK 1066 Score = 280 bits (715), Expect = 4e-73, Method: Composition-based stats. Identities = 141/411 (34%), Positives = 197/411 (47%), Gaps = 16/411 (3%) Query: 1005 KGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQ--TITRQTDELTGLSSLVVL 1062 +G V P+ ++G D++D IT + DE++ + + Sbjct: 811 TDEGVYVEA---FTEGKQVIEPLAQRITGRTAAEDILDSDGNIITAKNDEISDDDAKRIE 867 Query: 1063 DSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDTL 1121 +R + G G ++ + V + I G L Sbjct: 868 KLGIERVK---IRSVMTCECKSGVCAKCYGRNLATGEEVNRGEAVGIMAAQSIGEPGTQL 924 Query: 1122 ARIPQESGGT--KDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITP 1179 +GG DIT GLPRV +LFEAR+PK A + G V+ + VI Sbjct: 925 TMRTFHTGGVAGSDITQGLPRVVELFEARQPKGLAEICRADGKVTDILRQGDGKFEVIVS 984 Query: 1180 VDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQD 1239 G + IP +L+V + + V+ G I++GP P DIL GV V Y+V EVQ Sbjct: 985 --GEEEQRYEIPYGARLSVKKDDEVKAGQNITEGPLYPEDILEHVGVTGVYDYLVKEVQK 1042 Query: 1240 VYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVG 1299 VY+ QGV INDKHIEVIV +ML KA ++ AG ++ + G S + AN++ + GK Sbjct: 1043 VYKQQGVDINDKHIEVIVSKMLSKARVITAGDTNLMPGGLYALSEINNANKKAKEEGKKA 1102 Query: 1300 ATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPA 1359 AT R LLGITKASL T+SF+SAASFQETTR+LT+AA GK+D L+GLKENVIVG+L+PA Sbjct: 1103 ATSKRVLLGITKASLETDSFLSAASFQETTRMLTDAATKGKKDRLKGLKENVIVGKLVPA 1162 Query: 1360 GTGYAYHQDRMRRRAAGEAPAAPQVT---AEDASASLAELLNAGLGGSDNE 1407 GTG +++ E D +A + D E Sbjct: 1163 GTGMKRYKNIGLDYGVNEVFMEAYEEHKRKLDEEKESLYSFDANIKMEDEE 1213 >UniRef50_UPI0001C379E7 DNA-directed RNA polymerase subunit beta'''' n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C379E7 Length = 1237 Score = 999 bits (2583), Expect = 0.0, Method: Composition-based stats. Identities = 556/1277 (43%), Positives = 785/1277 (61%), Gaps = 116/1277 (9%) Query: 12 TKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECL 71 + F++IKI LASP+ IRSWS+G V++PETINYRT KPERDGLFC RIFGP KD+EC Sbjct: 1 MEFTTFESIKIGLASPEQIRSWSYGVVERPETINYRTQKPERDGLFCERIFGPTKDWECH 60 Query: 72 CGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMP 131 CGK+K+++ +G +C++CGVEVT+ +VRRERMGHIELA+P +HIW+ K PSRIG +L++ Sbjct: 61 CGKFKKIRFKGKVCDRCGVEVTRARVRRERMGHIELAAPVSHIWYFKGTPSRIGQVLEVS 120 Query: 132 LRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKS 191 + +E VLYF Y+V + G T L ++Q+L+E++YL LE++GD+F A+MGAEAI+ LL Sbjct: 121 QKRLEEVLYFTKYIVTDPGNTELLKKQLLSEKEYLSYLEKYGDDFKAEMGAEAIRKLLNE 180 Query: 192 MDL----------------------------------------------------EQECE 199 D E + Sbjct: 181 YDPARYDTHKQRLIEMGKVSLGGKKITCFNKPTECDCEECRKFAELEGIDWRNNLEIVAD 240 Query: 200 QLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGR 259 L+ EL + K+ KL KR++++EAF SGNKPEWMIL+V+PV+PPD+RP++ LDGGR Sbjct: 241 DLKAELEGLPAGQKKVKLLKRLQIIEAFRLSGNKPEWMILSVVPVIPPDIRPMIMLDGGR 300 Query: 260 FATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGS 319 +ATSDLNDLYRRVINRNNRLKR+L+L APDIIVRNEKRMLQEAVDAL+DN GR +TG Sbjct: 301 YATSDLNDLYRRVINRNNRLKRMLELDAPDIIVRNEKRMLQEAVDALIDN---GRPVTGP 357 Query: 320 NKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKP 379 + R LKSL+DM+KGKQGRFRQNLLGKRVDYSGRSVI VGP L+++QCGLPK+MALELFKP Sbjct: 358 SNRALKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKMYQCGLPKEMALELFKP 417 Query: 380 FIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEP 439 F+ +L + IK+A+K+++R + VWD L++VI++HPV+LNRAPTLHRLGIQAFEP Sbjct: 418 FVLKRLVDKKAIANIKSARKLIDRADNKVWDALEDVIKDHPVMLNRAPTLHRLGIQAFEP 477 Query: 440 VLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPI 499 +L+EG+AI+LHPLVC+A+NADFDGDQMAVH+PL+ EAQ EAR LM++ NN+L P++G+P+ Sbjct: 478 ILVEGRAIKLHPLVCSAFNADFDGDQMAVHLPLSAEAQAEARFLMLAANNLLKPSDGKPV 537 Query: 500 IVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDA 559 VPSQD+VLG YY+T GEG V E Y SLHA +KV+IT KD Sbjct: 538 AVPSQDMVLGSYYLTMAKPGEPGEGKVFRDVNEVLMAYNEHDVSLHANIKVKIT---KDI 594 Query: 560 NGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQA-----------LGKKAISKMLNTC 608 + V+K D TVGR I +P+ L Y + +GKK +S ++ C Sbjct: 595 GDKKVSKII--DATVGRLIFNENIPQNLGYVDRTNSDKQFDLEVAFLVGKKQLSDIIERC 652 Query: 609 YRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQF 668 +I G T D+I G+ Y+ R+ +V + D IP +K I++EA+AEV +I ++ Sbjct: 653 IKIHGTTTTSEVLDRIKALGYKYSTRAALTVAVCDATIPPQKKAILAEADAEVEQITNEY 712 Query: 669 QSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADS 728 + G ++A E+ K+I +W D V+K + +N +N I+MMADS Sbjct: 713 EYGYISAQEKTKKIIALWTNTTDEVTKKLKENF---------------DRYNPIWMMADS 757 Query: 729 GARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTAL 788 GARGS +QIRQLAGMRGL+A G++IE PI AN+REGLN+L+YFI++ GARKGLADTAL Sbjct: 758 GARGSISQIRQLAGMRGLIANTSGTVIEIPIRANYREGLNILEYFIASRGARKGLADTAL 817 Query: 789 KTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDV 848 +TA+SGYLTRRLVDV+QD+++ E+DCGT +GI + + G +V EP +R++GR AED+ Sbjct: 818 RTADSGYLTRRLVDVSQDVIIREEDCGTTDGIEVFEIRNGNEVVEPFDERLVGRFLAEDL 877 Query: 849 LKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHI 908 T ++++ RN L+ + + + V+ +K+RSV++C GVCA CYG +LA +I Sbjct: 878 RDEATGELIMSRNKLITDADAKKILDAGVEEIKIRSVLTCRAKTGVCAKCYGANLAFNNI 937 Query: 909 INKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAAS---RAAAESSIQVKNKGSIKLSNVKS 965 ++ GEA+GVIAAQSIGEPGTQLTMRTFH GG AS + +V+ + + Sbjct: 938 VSVGEAVGVIAAQSIGEPGTQLTMRTFHTGGVASADAEDITQGLPRVEELFESRRPKGAA 997 Query: 966 VVNS-SGKLVITSRN--TELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDP 1022 +++ SGK+ I T + + ++ E+Y +PY + +GE++ G + + Sbjct: 998 ILSRISGKIHIEEIKTTTNIIVTNDETGESENYMIPYNLKIRVQEGEEIEKGTRLTEGNI 1057 Query: 1023 HTMPVITEV--SGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKI 1080 + ++ + + + Q ++ V++ R Sbjct: 1058 YPADILNILGTKAVQNYIINEVQKVYRLQGVDINDKHIEVIVRQMLRKVK---------- 1107 Query: 1081 VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPR 1140 V+ G+ L+PGT + ++ +Q +I +G+ ++ Q S + IT Sbjct: 1108 VEESGSSYLLPGTLVDSKKIDEINEELQ----ARIDAGEYDVQLVQISPVLQGITKASSN 1163 Query: 1141 VADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE 1200 A +E + I G + VI ++IP + + Sbjct: 1164 SDSFMSAASFQETTKALTDAAISGKSDRLLGLKENVIIG--------KLIPAGTGMECYR 1215 Query: 1201 GERVERGDVISDGPEAP 1217 V + + ++ AP Sbjct: 1216 NVEVVKNEGYTEHQAAP 1232 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 139/375 (37%), Positives = 191/375 (50%), Gaps = 13/375 (3%) Query: 1017 VANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRP 1076 + N + P + G D+ D T ++ + +R Sbjct: 854 IRNGNEVVEPFDERLVGRFLAEDLRDEATGELIMSRNKLITDADAKKILDAGVEEIKIRS 913 Query: 1077 ALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDTLARIPQESGGT---- 1131 L G G ++ + V + I G L +GG Sbjct: 914 VLTCRAKTGVCAKCYGANLAFNNIVSVGEAVGVIAAQSIGEPGTQLTMRTFHTGGVASAD 973 Query: 1132 -KDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMI 1190 +DIT GLPRV +LFE+RRPK AIL+ ISG + +E K +++T + + MI Sbjct: 974 AEDITQGLPRVEELFESRRPKGAAILSRISGKIHI-EEIKTTTNIIVTNDETGESENYMI 1032 Query: 1191 PKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKIND 1250 P ++ V EGE +E+G +++G P DIL + G AV YI+NEVQ VYRLQGV IND Sbjct: 1033 PYNLKIRVQEGEEIEKGTRLTEGNIYPADILNILGTKAVQNYIINEVQKVYRLQGVDIND 1092 Query: 1251 KHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEAN------GKVGATYSR 1304 KHIEVIVRQMLRK + +GSS L G V+ ++ N EL+A S Sbjct: 1093 KHIEVIVRQMLRKVKVEESGSSYLLPGTLVDSKKIDEINEELQARIDAGEYDVQLVQISP 1152 Query: 1305 DLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 L GITKAS ++SF+SAASFQETT+ LT+AA++GK D L GLKENVI+G+LIPAGTG Sbjct: 1153 VLQGITKASSNSDSFMSAASFQETTKALTDAAISGKSDRLLGLKENVIIGKLIPAGTGME 1212 Query: 1365 YHQDRMRRRAAGEAP 1379 +++ + G Sbjct: 1213 CYRNVEVVKNEGYTE 1227 >UniRef50_B2UUV9 DNA-directed RNA polymerase subunit beta' n=5926 Tax=root RepID=RPOBC_HELPS Length = 2890 Score = 978 bits (2529), Expect = 0.0, Method: Composition-based stats. Identities = 570/1326 (42%), Positives = 804/1326 (60%), Gaps = 104/1326 (7%) Query: 9 KAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDY 68 K + ++F + ++ LASP+ I SWS+GEVKKPETINYRT KPERDGLFC +IFGP KDY Sbjct: 1388 KEDDRPKDFSSFQLTLASPEKIHSWSYGEVKKPETINYRTLKPERDGLFCMKIFGPTKDY 1447 Query: 69 ECLCGKYKRLKHRGV-ICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLL 127 ECLCGKYK+ + + + CEKCGV +T +KVRR RMGHIELA+P AHIW++ SLPSRIG L Sbjct: 1448 ECLCGKYKKPRFKDIGTCEKCGVAITHSKVRRFRMGHIELATPVAHIWYVNSLPSRIGTL 1507 Query: 128 LDMPLRDIERVLYFESYVVIEGGMTNLE--------RQQILTEEQYLDALEEFGDE-FDA 178 L + ++D+ERVLY+E+Y+V E G + + IL EEQY + + D F A Sbjct: 1508 LGVKMKDLERVLYYEAYIVKEPGEAAYDNEGTKLVMKYDILNEEQYQNISRRYEDRGFVA 1567 Query: 179 KMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMI 238 +MG EAI+ LL+ +DL + L+EE+ +TNS+ K+KKL KR+K++E+F+ SGN+PEWM+ Sbjct: 1568 QMGGEAIKDLLEEIDLITLLQSLKEEVKDTNSDAKKKKLIKRLKVVESFLNSGNRPEWMM 1627 Query: 239 LTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRM 298 LTVLPVLPPDLRPLV LDGG+FA SD+N+LYRRVINRN RLKRL++L AP+IIVRNEKRM Sbjct: 1628 LTVLPVLPPDLRPLVALDGGKFAVSDVNELYRRVINRNQRLKRLMELGAPEIIVRNEKRM 1687 Query: 299 LQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVG 358 LQEAVD L DNGR A+ G+NKRPLKSL+++IKGKQGRFRQNLLGKRVD+SGRSVI VG Sbjct: 1688 LQEAVDVLFDNGRSTNAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSGRSVIVVG 1747 Query: 359 PYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIRE 418 P L++ +CGLPK MALELFKP + KLE RG ATT+K AK+M+E++ VW+ L E+ Sbjct: 1748 PNLKMDECGLPKNMALELFKPHLLSKLEERGYATTLKQAKRMIEQKSNEVWECLQEITEG 1807 Query: 419 HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQL 478 +PVLLNRAPTLH+ IQAF P LI+GKAIQLHPLVC+A+NADFDGDQMAVHVPL+ EA Sbjct: 1808 YPVLLNRAPTLHKQSIQAFHPKLIDGKAIQLHPLVCSAFNADFDGDQMAVHVPLSQEAIA 1867 Query: 479 EARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYR 538 E + LM+S+ NIL PA+G+ +++PSQD+VLGLYY++ + KGE + + E Sbjct: 1868 ECKVLMLSSMNILLPASGKAVVIPSQDMVLGLYYLSLEKSGVKGEHKLFSSVNEIITAID 1927 Query: 539 SGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGK 598 + +HA+++V + + ++ T+ GR I+ I+P +P + N+ + K Sbjct: 1928 TKELDIHAKIRV-------------LDQGNIIATSAGRMIIKSILPDFIPTDLWNRPMKK 1974 Query: 599 KAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAE 658 K I +++ +++ G+ T F D + GF YA ++G S+ ++D++ P+ K +++ +A+ Sbjct: 1975 KDIGVLVDYVHKVGGIGITATFLDNLKTLGFRYATKAGISISMEDIITPKDKQKMVEKAK 2034 Query: 659 AEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVS 718 EV +IQ+Q+ GL+T ERYNK+ID W ND++SK MM + + Sbjct: 2035 VEVKKIQQQYDQGLLTDQERYNKIIDTWTEVNDKMSKEMMSTIAQDKEG----------- 2083 Query: 719 FNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHG 778 FNSIYMMADSGARGSAAQIRQL+ MRGLM KPDGSIIETPI +NF+EGLNVL+YF STHG Sbjct: 2084 FNSIYMMADSGARGSAAQIRQLSAMRGLMTKPDGSIIETPIISNFKEGLNVLEYFNSTHG 2143 Query: 779 ARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDR 838 ARKGLADTALKTAN+GYLTR+L+DV+Q++ V DDCGTHEGI +T + G ++ EPL +R Sbjct: 2144 ARKGLADTALKTANAGYLTRKLIDVSQNVKVVSDDCGTHEGIEITDIAVGSELIEPLEER 2203 Query: 839 VLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHC 898 + GRV EDV+ P T +IL+ +TL+ E+ + E + ++ +R+ V+C GVCA C Sbjct: 2204 IFGRVLLEDVIDPITNEILLYADTLIDEEGAKKVVEAGIKSITIRTPVTCKAPKGVCAKC 2263 Query: 899 YGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSI 958 YG +L G + GEA+GV+AAQSIGEPGTQLT+RTFH+GG ASR+ E I +G + Sbjct: 2264 YGLNLGEGKMSYPGEAVGVVAAQSIGEPGTQLTLRTFHVGGTASRSQDEREIVASKEGFV 2323 Query: 959 KLSNVKSVVNSSGKLVITSRNT------ELKLIDEFGRTKESYKVPYGAVLAKGDGE--- 1009 + N+++ N GK +I +R E K+ F V V++ +G+ Sbjct: 2324 RFYNLRTYTNKEGKSIIANRRNASILVVEPKIKAPFDGELRIETVYEEVVVSVKNGDQEA 2383 Query: 1010 ----------------------------------QVAGGETVANWDPHTMPVITEVSGFV 1035 +V G ++A+ V + Sbjct: 2384 KFVLRRSDIVKPSELAGVGGKIEGKVYLPYASGHKVHKGGSIADIIQEGWNVPNRIPYAS 2443 Query: 1036 RFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDM 1095 + + G VL++ + + + Sbjct: 2444 ELLVKDNDPIAQDVYAKEKGAIKYYVLEANHLERTHGIKKGDIVSEKGLFAVIADDNGRE 2503 Query: 1096 PAQYFLPGKAIVQLEDGVQISSGDTLAR------------IPQESGGTKDITGGLPRVAD 1143 A++++ + + ++D ++ + +++ P + D G + V Sbjct: 2504 AARHYIARGSEILIDDNSEVGANSVISKPTTNTFKTIATWDPYNTPIIADFKGKVGFVDI 2563 Query: 1144 LFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGER 1203 + ++ + +V G + + + + + + +G Sbjct: 2564 IAGVTVAEKEDENTGTTSLVVNDYIPSGYKPSLFLEGINGEEVRYFLEPKTSIAISDGVS 2623 Query: 1204 VERGDVI-------------SDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKIND 1250 VE+ +V+ + G ++ R I++EV + G I + Sbjct: 2624 VEQAEVLAKIPKATVKSRDITGGLPRVSELFEARKPKPKDVAILSEVDGIVSF-GKPIRN 2682 Query: 1251 K-HIEV 1255 K HI V Sbjct: 2683 KEHIIV 2688 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 164/437 (37%), Positives = 250/437 (57%), Gaps = 28/437 (6%) Query: 956 GSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGG- 1014 ++ ++++ +++ + + D+ GR + + G+ + D +V Sbjct: 2468 YVLEANHLERTHGIKKGDIVSEKGLFAVIADDNGREAARHYIARGSEILIDDNSEVGANS 2527 Query: 1015 ----------ETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDS 1064 +T+A WDP+ P+I + G V F D+I G T+ + DE TG +SLVV D Sbjct: 2528 VISKPTTNTFKTIATWDPYNTPIIADFKGKVGFVDIIAGVTVAEKEDENTGTTSLVVNDY 2587 Query: 1065 AERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARI 1124 +P+L + G +V +YFL K + + DGV + + LA+I Sbjct: 2588 I-----PSGYKPSLFLEGINGEEV---------RYFLEPKTSIAISDGVSVEQAEVLAKI 2633 Query: 1125 PQESGGTKDITGGLPRVADLFEARRPK--EPAILAEISGIVSFGKETKGKRRLVITPVDG 1182 P+ + ++DITGGLPRV++LFEAR+PK + AIL+E+ GIVSFGK + K +++T DG Sbjct: 2634 PKATVKSRDITGGLPRVSELFEARKPKPKDVAILSEVDGIVSFGKPIRNKEHIIVTSKDG 2693 Query: 1183 SDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYR 1242 P + + K +Q+ V E V G+ ++DG + HDILR+ G + +YIV+EVQ VYR Sbjct: 2694 R-PMDYFVDKGKQILVHADEFVHAGEAMTDGVVSSHDILRISGEKELYKYIVSEVQQVYR 2752 Query: 1243 LQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATY 1302 QGV I DKHIE+IV QMLR+ I+++G S F+EG+ V K N + A A Sbjct: 2753 RQGVSIADKHIEIIVSQMLRQVRILDSGDSKFIEGDLVSKKLFKEENARVIALKGEPAIA 2812 Query: 1303 SRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362 LLGIT+A++ ++S ISAASFQETT+VLTEA++A K+D L LKENV++GR+IP GTG Sbjct: 2813 EPVLLGITRAAIGSDSIISAASFQETTKVLTEASIAMKKDFLEDLKENVVLGRMIPVGTG 2872 Query: 1363 YAYHQDRMRRRAAGEAP 1379 ++ + R + Sbjct: 2873 MYKNKKIVLRTLEDDPK 2889 >UniRef50_A8R9Q5 DNA-directed RNA polymerase n=3 Tax=Bacteria RepID=A8R9Q5_9FIRM Length = 1286 Score = 955 bits (2469), Expect = 0.0, Method: Composition-based stats. Identities = 478/1133 (42%), Positives = 680/1133 (60%), Gaps = 94/1133 (8%) Query: 14 TEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCG 73 F +I++ LASP+ I WS GEVKKPETINYR+ KPERDGLFC RIFGP KD+EC CG Sbjct: 3 VNNFASIQVGLASPERIHEWSHGEVKKPETINYRSQKPERDGLFCERIFGPSKDWECYCG 62 Query: 74 KYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLR 133 KYK+++++GV+C++CGVE+T++ VRRERMGHIELA+P AHIW+L+ +PSR+ LLLD+ + Sbjct: 63 KYKKVRYKGVVCDRCGVEITKSSVRRERMGHIELAAPVAHIWYLRGIPSRMALLLDVTPK 122 Query: 134 DIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFG-DEFDAKMGAEAIQALLKSM 192 +E V+YF S++V + T LE +Q+L+E +Y + + +G F AK GAEA LL+ + Sbjct: 123 QLEEVIYFVSWIVTDPKDTKLEYKQVLSEREYRENVAIYGPGSFTAKTGAEAALTLLEEV 182 Query: 193 DLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPL 252 DLE E +++ L KRKKL KR+ +EAF S NKPEWMI+T +PV+PPDLRP+ Sbjct: 183 DLEAEFTKIQAALEGAQG-EKRKKLIKRLDTVEAFRHSDNKPEWMIMTAIPVIPPDLRPM 241 Query: 253 VPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRR 312 + LDGGRFATSDLNDLYRRVI RNNRLK+LL+L P IIV+NEKRMLQEAVDAL+DNGRR Sbjct: 242 LQLDGGRFATSDLNDLYRRVITRNNRLKKLLELGTPAIIVQNEKRMLQEAVDALIDNGRR 301 Query: 313 GRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKM 372 + ITG+ R LKSL+ +KGKQGRFRQNLLGKRVD+SGRSVI VGP L+++QCGLP++M Sbjct: 302 SKPITGAGGRALKSLSHSLKGKQGRFRQNLLGKRVDFSGRSVIAVGPDLKMYQCGLPREM 361 Query: 373 ALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRL 432 A++LFKPF+ ++ R +A+ K A+K+++R+++ +WDI++ VI +PVL+NRAPTLHRL Sbjct: 362 AIQLFKPFVINEIVNREIASNPKTAEKLIDRQDSRIWDIVESVIDGYPVLMNRAPTLHRL 421 Query: 433 GIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILS 492 GIQAF+P L+EG+A++LHPLVC A+NADFDGDQMAVHVPL+ EA+ EA +M+ +NNIL Sbjct: 422 GIQAFKPKLVEGRAMRLHPLVCTAFNADFDGDQMAVHVPLSEEARAEALVMMLGSNNILG 481 Query: 493 PANGEPIIVPSQDVVLGLYYMTRDCV-------------------------NAKGEGMVL 527 P +G+PI+ P QD+V+G +Y+T + EG V Sbjct: 482 PKDGKPIVTPGQDMVMGNFYLTMEETAEEFHQEADRYMAVDCPKEAASWNRYGDNEGHVY 541 Query: 528 TGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGL 587 E Y + LH+RV + K + E + TTVG+ I + P+ Sbjct: 542 GSINEVLMAYETNQIHLHSRVAIPARALHKTSFSEA-QQNKYLLTTVGKIIFNNMFPEDF 600 Query: 588 PYSI------------------------------VNQALGKKAISKMLNTCYRILGLKPT 617 P+ + A KK + K++ ++ + T Sbjct: 601 PFLNEVSNENFSATPDKYFLEMGKDVKEAIRNLPITPAFKKKDLGKIIGEIFKRYSTEKT 660 Query: 618 VIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGE 677 D+I GF Y+ +G +V + D+ + K E + + + E++ G +T E Sbjct: 661 SEILDEIKDMGFRYSTVAGVTVSLADIEVAPHKDEHVEYGKEKAEELKRLRNKGKLTMQE 720 Query: 678 RYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQI 737 + +WA D +++ ++ +L N I MMA SGARG+ + Sbjct: 721 WERHLNKLWADVKDDIAEELLGSL---------------PRKNPINMMARSGARGNTSNF 765 Query: 738 RQLAGMRGLMAKPDGS----------IIETPITANFREGLNVLQYFISTHGARKGLADTA 787 QLAGMRGLMAKP S IIE PI + FREGLNV ++FISTHG RKGL DTA Sbjct: 766 TQLAGMRGLMAKPSQSKSAKGEYVPSIIEVPIYSCFREGLNVSEFFISTHGVRKGLTDTA 825 Query: 788 LKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPV--IEGGDVKEPLRDRVLGRVTA 845 LKTA SGYLTRRLVDVAQD+++ +DDCGT +G + + + + E L DR++GR + Sbjct: 826 LKTAESGYLTRRLVDVAQDVIIKQDDCGTDKGYWVEAIVDRKTNTIIESLYDRLVGRYSK 885 Query: 846 EDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLAR 905 ++V+ P T ++++ + + E +E++ ++ + +RS +C + +G+C CYGR++A Sbjct: 886 QEVVNPKTGELIIESDEFITEAIAKKIEDSGIEGMYIRSAFTCKSIYGICKKCYGRNMAT 945 Query: 906 GHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAAS---RAAAESSIQVKNKGSIKLSN 962 G + GEA+G++AAQSIGEPGTQLTMRTFH GG AS + +V+ + Sbjct: 946 GKDVEVGEAVGIMAAQSIGEPGTQLTMRTFHTGGVASADGGDITQGLPRVEELFEARCPK 1005 Query: 963 VKSVVNSSGKLVITSRNT----ELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVA 1018 +V+ + E+ + ++ + G V G+ + Sbjct: 1006 GVAVLAQISGEITAIEQVETGYEVTVSNDKESIVHKVTLAQAIRPWMKIGANVEAGDKIT 1065 Query: 1019 N--WDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTA 1069 DP + + V + + Q E++ V++ R Sbjct: 1066 EGPVDPKELLKVAGVRQVQNYILKEVKKVYQSQGIEISDKHIEVMIRQMLRKV 1118 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 124/368 (33%), Positives = 195/368 (52%), Gaps = 8/368 (2%) Query: 1021 DPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKI 1080 + + + G ++++ +T + ++ + + G +R A Sbjct: 869 NTIIESLYDRLVGRYSKQEVVNPKTGELIIESDEFITEAIAKKIEDSGIEGMYIRSAFTC 928 Query: 1081 VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDTLARIPQESGGT-----KDI 1134 G G +M + V + I G L +GG DI Sbjct: 929 KSIYGICKKCYGRNMATGKDVEVGEAVGIMAAQSIGEPGTQLTMRTFHTGGVASADGGDI 988 Query: 1135 TGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWR 1194 T GLPRV +LFEAR PK A+LA+ISG ++ ++ + + ++ S ++ + + Sbjct: 989 TQGLPRVEELFEARCPKGVAVLAQISGEITAIEQVETGYEVTVSNDKESIVHKVTLAQAI 1048 Query: 1195 QLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIE 1254 + + G VE GD I++GP P ++L++ GV V YI+ EV+ VY+ QG++I+DKHIE Sbjct: 1049 RPWMKIGANVEAGDKITEGPVDPKELLKVAGVRQVQNYILKEVKKVYQSQGIEISDKHIE 1108 Query: 1255 VIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASL 1314 V++RQMLRK ++ + G QV + + NR+ +GK AT+ LLGI+KAS+ Sbjct: 1109 VMIRQMLRKVVVLEGNDTHLNAGVQVSLTEITKINRQALLSGKTPATFKPVLLGISKASV 1168 Query: 1315 ATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGY--AYHQDRMRR 1372 T+SF+SAASFQETT+VLT+AA+ GK+D L GLKENVI+G++IPAGTG + + + Sbjct: 1169 ETDSFLSAASFQETTKVLTDAAIKGKKDYLIGLKENVIIGKMIPAGTGVGESRPMNAIVE 1228 Query: 1373 RAAGEAPA 1380 A E A Sbjct: 1229 AKANELKA 1236 >UniRef50_A9NEL8 DNA-directed RNA polymerase subunit beta' n=9 Tax=Bacteria RepID=RPOC_ACHLI Length = 1375 Score = 927 bits (2395), Expect = 0.0, Method: Composition-based stats. Identities = 478/1125 (42%), Positives = 687/1125 (61%), Gaps = 76/1125 (6%) Query: 1 MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60 + +++ ++ ++ F K+ LASPD IR+WS+GEV ETINYRT KPE GLF R Sbjct: 150 VNKIIQPIRKTYGSKAFTHFKVRLASPDEIRNWSYGEVINHETINYRTSKPEPGGLFDER 209 Query: 61 IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120 IFGP +DY+C CGK + + ++G IC KCG+E+T++KVRRERMGHI L +P H W+LK+ Sbjct: 210 IFGPTRDYQCACGKKQTV-NKGQICPKCGIEITESKVRRERMGHINLEAPVVHTWYLKNS 268 Query: 121 PSRIGLLLDMPLRDIERVLYFESYVVIEGG-MTNLERQQILTEEQYLDALEEFGDEFDAK 179 PSR+ +LL + + +E V+Y SY+V + G T L ++QIL+E+ Y +EE+G F A Sbjct: 269 PSRLAILLGIKAKQLEEVVYHASYIVTDPGQNTPLAKKQILSEQDYSLLVEEYGSRFTAL 328 Query: 180 MGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMIL 239 GAEA++ LL+ +DL++E + LR+ L T+S+ KR ++ KR+ ++EAF QS NKPEWM++ Sbjct: 329 TGAEAVKKLLQDLDLDKEVKNLRKRLK-TSSKQKRDRIIKRLDVVEAFNQSDNKPEWMVM 387 Query: 240 TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRML 299 V+PV+PPDLRP+VPLDGGRFAT+DLNDLYRR++NRNNRLK+ + AP +I +NEKRML Sbjct: 388 DVIPVIPPDLRPMVPLDGGRFATTDLNDLYRRILNRNNRLKKQKEQMAPRLITKNEKRML 447 Query: 300 QEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP 359 QEAVDAL DN +RG+ R LKSL+D+++GKQGRFRQNLLGKRVDYSGRSVI VGP Sbjct: 448 QEAVDALFDNAKRGKKAAVERNRHLKSLSDLLRGKQGRFRQNLLGKRVDYSGRSVIIVGP 507 Query: 360 YLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREH 419 L ++QCG+P++MA+ LFKPFI +L+L A K A ER + W L++V+REH Sbjct: 508 DLEMYQCGIPREMAITLFKPFILRELQLTHGAEK-KNANAKYERRDDDTWRALEKVVREH 566 Query: 420 PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLE 479 PVLLNRAPTLHRLGIQAFE LI+GKAI+LHPLV A+NADFDGDQMAVH+PL+ EAQ E Sbjct: 567 PVLLNRAPTLHRLGIQAFEVKLIDGKAIRLHPLVTPAFNADFDGDQMAVHLPLSPEAQAE 626 Query: 480 ARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-----------------RDCVNAKG 522 AR LM+++NNIL+P +G+P++ PSQD+VLG YY+T + + Sbjct: 627 ARLLMLASNNILNPRDGKPVVTPSQDMVLGNYYLTIEESKDRNFGDDLERTKKHQEKHRH 686 Query: 523 EGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMI 582 EG + E + Y + SLH R+ ++ + + K TT+G+ I I Sbjct: 687 EGKFFSSIDEVKIAYENKDISLHTRIIIKPESVK--DTFTVEQKNMYLVTTLGKIIFNEI 744 Query: 583 VPKGLPYS----------------IVNQ---------------ALGKKAISKMLNTCYRI 611 +P+ PY + + K+ +S ++ +++ Sbjct: 745 LPETFPYVNEPTMSNLSEKTPDIYFIKKGVNPKDALKHIPTPEPFKKRFLSMVIAQVFKL 804 Query: 612 LGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSG 671 + T D++ GF Y+ +G ++ D+ + KK E++ E E+ EI+E F+ G Sbjct: 805 FHISETSRMLDKLKDLGFKYSTVAGITISYADINVYSKKKEMVEATEEEINEIEEWFEDG 864 Query: 672 LVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGAR 731 L+T ER VID W + + +M + N+I+MM+DSGAR Sbjct: 865 LLTDSERRKLVIDKWTNVKNEIQSGIMKEFDKD---------------NNIFMMSDSGAR 909 Query: 732 GSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTA 791 G+ + QL GMRGLM+ P G IE P+ ++FREGL V ++FISTHGARKG DTALKTA Sbjct: 910 GNVSNFTQLVGMRGLMSNPKGETIEVPVQSSFREGLTVSEFFISTHGARKGSTDTALKTA 969 Query: 792 NSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIE-GGDVKEPLRDRVLGRVTAEDVLK 850 SGYLTRRLVDV+QD+++ EDDCG+ G+ + + + G PL DR+ GR A D++ Sbjct: 970 ESGYLTRRLVDVSQDVIIVEDDCGSSHGVYVEAIKDESGKEIVPLYDRIYGRFAAHDIIS 1029 Query: 851 PGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIIN 910 P T ++ V RN L+ E+ + ++ + V++RS+++C + G+CA YG +LA + Sbjct: 1030 PKTGEVFVKRNELITEEIGLAIVKSGMQKVEIRSIMTCTSSHGICAKDYGINLATNQFVE 1089 Query: 911 KGEAIGVIAAQSIGEPGTQLTMRTFHIGGA-ASRAAAESSIQVKNKGSIKLSNVKSVVNS 969 GEAIGV+AAQSIGEPGTQLTMRTFH GG A + +++ + K+ ++ Sbjct: 1090 VGEAIGVVAAQSIGEPGTQLTMRTFHTGGVAAGADITQGLPRIQELFEARNPKGKATISE 1149 Query: 970 SGKLV--ITSRNTELKL-IDEFGRTKESYKVPYGAVLAKGDGEQVAGGETV--ANWDPHT 1024 V I+ R + + I + T+ Y + G+ V G+ + + +P Sbjct: 1150 VEGKVKDISRRGGSISITITDTQGTEYKYTLDPNIEALVKKGQDVVAGQKLSSGSINPKE 1209 Query: 1025 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTA 1069 + +T+V + + Q E++ V++ R Sbjct: 1210 LLRVTDVKTASNYILEEVQKVYRAQGVEISDKHVEVIIRQMLRRI 1254 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 125/380 (32%), Positives = 191/380 (50%), Gaps = 12/380 (3%) Query: 1008 GEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAER 1067 G V + +P+ + G D+I +T ++ + L + Sbjct: 997 GVYVEAIKD--ESGKEIVPLYDRIYGRFAAHDIISPKTGEVFVKRNELITEEIGLAIVKS 1054 Query: 1068 TAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDTLARIPQ 1126 ++R + + G G ++ F+ + + I G L Sbjct: 1055 GMQKVEIRSIMTCTSSHGICAKDYGINLATNQFVEVGEAIGVVAAQSIGEPGTQLTMRTF 1114 Query: 1127 ESGGTK---DITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGS 1183 +GG DIT GLPR+ +LFEAR PK A ++E+ G V G + IT G+ Sbjct: 1115 HTGGVAAGADITQGLPRIQELFEARNPKGKATISEVEGKVKDISRRGGSISITITDTQGT 1174 Query: 1184 DPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRL 1243 + Y+ + + V +G+ V G +S G P ++LR+ V + YI+ EVQ VYR Sbjct: 1175 E-YKYTLDPNIEALVKKGQDVVAGQKLSSGSINPKELLRVTDVKTASNYILEEVQKVYRA 1233 Query: 1244 QGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYS 1303 QGV+I+DKH+EVI+RQMLR+ ++ G ++ L G +V K N+E+ N A Sbjct: 1234 QGVEISDKHVEVIIRQMLRRIMVIIEGDTNILPGTEVSIDEFKRENKEVLKNRGRLAVGR 1293 Query: 1304 RDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG- 1362 LLGIT+ASL ++SF+SAASFQETTR+LT+AA+ K+DEL GLKENVI+G LIPAGTG Sbjct: 1294 PILLGITRASLRSDSFLSAASFQETTRILTDAAIRSKKDELHGLKENVIIGGLIPAGTGI 1353 Query: 1363 ----YAYHQDRMRRRAAGEA 1378 + ++ ++ + Sbjct: 1354 LQEKFFHYDQPEDKKPIYDD 1373 >UniRef50_Q8KTP7 DNA-directed RNA polymerase n=1 Tax=Candidatus Tremblaya princeps RepID=Q8KTP7_TREPR Length = 1319 Score = 921 bits (2379), Expect = 0.0, Method: Composition-based stats. Identities = 537/1393 (38%), Positives = 746/1393 (53%), Gaps = 124/1393 (8%) Query: 17 FDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYK 76 FD +K+ +ASP IRSWS GEV T+N R+ PE GLFC IFGP +EC CG+Y Sbjct: 20 FDRVKVCMASPLQIRSWSHGEVLTAATVNQRSMIPEAHGLFCTEIFGPAMCHECKCGRYA 79 Query: 77 RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIE 136 +H G+ICE CGVE+ + RR RMGHIELASP H WF + +G +L +P ++ Sbjct: 80 GEQHSGIICECCGVEIAPSYARRLRMGHIELASPVMHAWFSRPSSPHVGTILGLPHSEVV 139 Query: 137 RVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQ 196 RV ++ ++ G T L R +T + A A G + ++ LL S+ +E+ Sbjct: 140 RVARLQARLIRPPGAT-LCRDLTMTSMEDSIARTVGMQHGLAYSGCDGLRRLLASISMER 198 Query: 197 ECEQLREEL-NETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPL 255 E + + ++++R + R+++L + ++ +PEWMILTV+PVLP LRP++ Sbjct: 199 EVHDTTARIASPRVTDSQRGSMICRLRMLSSLLEFDARPEWMILTVIPVLPAGLRPMIRS 258 Query: 256 DGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRA 315 G A+SDLNDLYR VIN NNRL+RL+ L AP IV E +LQ +VD L+D R Sbjct: 259 AGRDAASSDLNDLYRGVINCNNRLRRLIALRAPQSIVAAEHDLLQRSVDDLMDGTARQGN 318 Query: 316 ITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALE 375 RP +SL++ ++GK GRFRQ++LGKRVDYSGRSVI VGP L +HQCG+P MALE Sbjct: 319 AREH-CRP-RSLSEALRGKTGRFRQHMLGKRVDYSGRSVIVVGPDLGMHQCGIPICMALE 376 Query: 376 LFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQ 435 LF+PF+ G L G+A +A+ V L IR HPVLLNRAPTLHRL +Q Sbjct: 377 LFRPFVAGALIRGGMAAQRASAE--VSAGSTAAVAALRHAIRHHPVLLNRAPTLHRLSVQ 434 Query: 436 AFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPAN 495 AF P L+EG AI+L+PLVCA +NADFDGDQMAVHVPL++EA EAR L++ NN+L PA+ Sbjct: 435 AFYPTLVEGLAIRLNPLVCAPFNADFDGDQMAVHVPLSVEAATEARMLLLPCNNLLLPAS 494 Query: 496 GEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEY 555 G P P+QD+VLG+YY+T L A SG + H+R + E Sbjct: 495 GYPASAPTQDMVLGIYYLTCGP--EDDYHGELGRADRAALKMESGWSRSHSRAMGVVRES 552 Query: 556 EKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLK 615 + G + L +TTVGRA+L +P G P+ VN+ + K + +++N + Sbjct: 553 LRH-RGSYSEFSVLHNTTVGRALLSHALPAGTPFHRVNRTISKGVLVEVMNEAAQRCLPL 611 Query: 616 PTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTA 675 A+ +M GF A R+G S+ IDDM P +K I+ A + + SG++T Sbjct: 612 CLKGMAESLMVAGFNAATRAGISLCIDDMCAPVRKVVTIAGAWRISSLLHRSHNSGVLTG 671 Query: 676 GERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAA 735 + +W ++ VS + L + + N++++M+ SG+RGS Sbjct: 672 TRLDHATTRLWQETSELVSDMLALELARQ-------GSTTLAATNAVHLMSASGSRGSTE 724 Query: 736 QIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGY 795 Q++QL+GMRGLM +PDG+I+ TP+T++FREGLN ++Y +S HGARKGLADTAL+TA+SGY Sbjct: 725 QVKQLSGMRGLMVRPDGTILGTPVTSSFREGLNAVEYAMSAHGARKGLADTALRTADSGY 784 Query: 796 LTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTAD 855 LTRRLVD + D+++TE DCGT G+ + + +GR TA V D Sbjct: 785 LTRRLVDASHDVIITELDCGTCAGVTVGRPKLNSTAVDRALAWCIGRYTASSVQSDA-GD 843 Query: 856 ILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAI 915 +L PRNT + + SV + +RS + CD+ GVCA CYG+DL +N G A+ Sbjct: 844 VLYPRNTSITRDVLEDSLLRSVAGLNIRSPLHCDSQNGVCAMCYGQDLCTLSRVNMGAAV 903 Query: 916 GVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVI 975 GV+AAQSIGEPGTQLTMRTFHIGG AS + + + G ++ S V V Sbjct: 904 GVVAAQSIGEPGTQLTMRTFHIGGIASSRSHD--VMACQPGVVRYSPCTHSVTPHRVRVA 961 Query: 976 TSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFV 1035 +S N +++ D G +ES+ +P+G++L G+ VA GE + +WD T PVI + Sbjct: 962 SSHNGSVQIHDGRGCARESHAIPHGSILHHASGDIVAAGEVLLSWDAVTTPVIAQHD--- 1018 Query: 1036 RFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDM 1095 + +++ + G + Sbjct: 1019 ---------------------------------SLATKCAEGIRLKRSDGRCCTV----- 1040 Query: 1096 PAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAI 1155 L A V + + G +A P + G DITGGL R+A LFEAR + Sbjct: 1041 ----MLSAGAEVAIGATQYVRRGQVIATEPAHAEGNTDITGGLARIASLFEARHAQ---- 1092 Query: 1156 LAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPE 1215 R+ N + G Sbjct: 1093 --------------------------------------RRHNEHDNSCWLHG-------- 1106 Query: 1216 APHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFL 1275 +LR G A+ + + ++VQ + QGV++N+KH+E+I RQMLR +VN G S F Sbjct: 1107 ----LLRSNGPTALLQRLQDDVQSILEPQGVRVNNKHLEIIARQMLRCVRVVNPGDSAFH 1162 Query: 1276 EGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEA 1335 EGE V S AN L + A Y LLGITK++L+TESFISAASFQ+TT+V+ A Sbjct: 1163 EGEHVARSEAARANAGLRLQNRRTAAYEHTLLGITKSALSTESFISAASFQDTTKVIATA 1222 Query: 1336 AVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRR------RAAGEAPAAPQVTAEDA 1389 A G+RD LRGLKENVIVGR+IPAGTG+ YH R AGE Q Sbjct: 1223 AACGRRDFLRGLKENVIVGRMIPAGTGFVYHAHRRLNADAEPASKAGEEEVRSQEQEPST 1282 Query: 1390 SASLAELLNAGLG 1402 G Sbjct: 1283 QGMPPASRGVHEG 1295 >UniRef50_Q3ZX00 DNA-directed RNA polymerase subunit beta' n=5 Tax=Dehalococcoides RepID=RPOC_DEHSC Length = 1295 Score = 918 bits (2372), Expect = 0.0, Method: Composition-based stats. Identities = 498/1220 (40%), Positives = 715/1220 (58%), Gaps = 135/1220 (11%) Query: 12 TKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECL 71 + +FDAI+I+LASPD IRSWS+GEV KPETINYRT KPERDGLFC RIFGP+KD+EC Sbjct: 2 NEVNDFDAIRISLASPDQIRSWSYGEVTKPETINYRTLKPERDGLFCERIFGPIKDFECA 61 Query: 72 CGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMP 131 CGKYKR++++G+IC+KCGVE+ + KVRRERMGHIELA P HIWF + +PSR+GLLL++ Sbjct: 62 CGKYKRIRYKGIICDKCGVEIARAKVRRERMGHIELACPVGHIWFTRGIPSRVGLLLNLS 121 Query: 132 LRDIERVLYFESYVVIEGGMTNLER------------------------QQILTEEQYLD 167 R +ER++Y+ +++ E+ Q+ E+ ++ Sbjct: 122 TRSLERIIYYSHFIITAVNDDAREKAIKDLEVISSQRVADKGSEVDTRVAQMEAEDATVE 181 Query: 168 ALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLT--------- 218 A+ + +F + E ++ ++ + + + Q L E +++ + Sbjct: 182 AINQIRRDFSTE--REQMEEDIQLLIDQLKDLQKGNLLTENQYYELKQRFSNVFEASMGA 239 Query: 219 KRIKLLEAFVQSGNKPEWMI--------------------------------LTVLPVLP 246 + + L +++ + +I ++ VLP Sbjct: 240 EALLKLLSYIDMDKERSKLIQETRSTSGQRRKKAGKQLQLVEAFRRSSNKPEWMIMTVLP 299 Query: 247 ---PDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAV 303 PDLRP+V LDGGRFATSDLNDLYRRVINRNNRL+ L+++ AP+II+RNEKRMLQEAV Sbjct: 300 VLPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLQHLMEIGAPEIIIRNEKRMLQEAV 359 Query: 304 DALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRL 363 D+L+DNGRRG+++ + KSL+D+++GKQGRFRQNLLGKRVDYSGRSVI VGP L+L Sbjct: 360 DSLIDNGRRGKSVAVNGDHKAKSLSDLLRGKQGRFRQNLLGKRVDYSGRSVIVVGPSLKL 419 Query: 364 HQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLL 423 QCGLP++MALELFKPF+ +L GLA IK+A+++VER V+DIL+EV+++ PVLL Sbjct: 420 SQCGLPRRMALELFKPFVMHRLVRDGLAPNIKSARRLVERARPEVYDILEEVVKDRPVLL 479 Query: 424 NRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARAL 483 NRAPTLHRL IQAFEPVLI+G A++LHPLVC+A+NADFDGDQMAVHVPL+ A EAR Sbjct: 480 NRAPTLHRLSIQAFEPVLIDGSALRLHPLVCSAFNADFDGDQMAVHVPLSKAAVKEARET 539 Query: 484 MMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLAS 543 M+S +N++ P++GEP++ PS D+V G YY+T AKGEG + +EA+R Y G+ Sbjct: 540 MLSIHNMMLPSSGEPVVSPSLDMVFGCYYLTTTRPGAKGEGKIFGDFEEAKRYYEMGIID 599 Query: 544 LHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISK 603 L A +KVR K ++ +TT GR I ++PK + N + K AI K Sbjct: 600 LRAIIKVRD------------GKGNMLETTTGRIIFNDVLPKAV--EFQNMDIPKSAIKK 645 Query: 604 MLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAE 663 ++ CY+IL + + D+I GF +A SG S+ + D+ +P +K ++++ A+ A Sbjct: 646 IIGRCYKILSSQDMAVMLDKIKELGFKFATSSGISIAMSDISVPREKTKLVAAADERTAI 705 Query: 664 IQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIY 723 + QF GL+T ERYN +I+ W DR++ A+ + S+Y Sbjct: 706 AEGQFARGLITEDERYNSIIETWMETTDRITDAIQAGFDKQG---------------SVY 750 Query: 724 MMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGL 783 MMA+SGA+G+ +QIRQ+AG+RGLM P G II+ PI ++ REGL L+YFISTHGARKGL Sbjct: 751 MMANSGAKGNISQIRQMAGLRGLMTNPSGRIIDFPIKSSLREGLTALEYFISTHGARKGL 810 Query: 784 ADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRV 843 ADTAL+T+ SGYLTRRL+DV QD+++ ++DCGT G + E G + PL DR+LGR Sbjct: 811 ADTALRTSGSGYLTRRLIDVTQDVIILQEDCGTANGTWIIEPKEKG-MLPPLVDRILGRW 869 Query: 844 TAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDL 903 TA +V+ P T +I+V N + E + E + V VRS ++C++ G+C CYGRDL Sbjct: 870 TAHNVVHPQTGEIIVDNNEEIDEIKAKAIGEAGITEVFVRSPLTCESTHGMCRRCYGRDL 929 Query: 904 ARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNV 963 R +++ A+G+IAAQSIGEPGTQLT+RTFH GG +V+ + V Sbjct: 930 GRVRLVDMNTAVGIIAAQSIGEPGTQLTLRTFHTGGVVGVDITTGLPRVEELFEARPPKV 989 Query: 964 KSVVNSSGKLVITSRNTELKLIDEFGRT--KESYKVPYGAVLAKGDGEQVAGGETVANWD 1021 +S+++ +V N + I ++ Y++P G + V G +A+ + Sbjct: 990 QSIISEIDGVVEVIENENGRHIRIASDEVYQDEYELPSGWKTQVQSRQWVDSGMVLASPE 1049 Query: 1022 PHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIV 1081 + G + D + R E+T +L+ + +E + A++I Sbjct: 1050 ---------LEGKSKAVVQSDQNVVARVAGEVTVEGNLITIKYSESEEREYTIPAAMQIK 1100 Query: 1082 DAQGNDV-----------------LIPGTDMPAQYFLPGKAIVQLEDGVQISSGDT---- 1120 G+ + I G D +Y + V GV I+ Sbjct: 1101 VKTGDTIRAGQQLTDGSINPQDILSILGRDAVQKYLVEEVQKVYYSQGVHINDKHIEVIA 1160 Query: 1121 ---LARIPQESGGTKDITGG 1137 L ++ +S G D+ G Sbjct: 1161 RQMLIKVRIDSSGDTDLVPG 1180 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 124/416 (29%), Positives = 184/416 (44%), Gaps = 35/416 (8%) Query: 947 ESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKG 1006 I V N I K++ + V + L G + Y G V Sbjct: 879 TGEIIVDNNEEIDEIKAKAIGEAGITEVFVR--SPLTCESTHGMCRRCYGRDLGRVRLVD 936 Query: 1007 DGEQV--AGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDS 1064 V +++ G V + + ++ + Sbjct: 937 MNTAVGIIAAQSIGEPGTQLTLRTFHTGGVVGVDITTGLPRVEELFEARPPKVQSIISEI 996 Query: 1065 AERTAGGKDLRPALKIVDAQGNDVLIPGTDMPA-QYFLPGKAIVQLEDGVQISSGDTLAR 1123 I + G + I ++ +Y LP Q++ + SG LA Sbjct: 997 DGVV---------EVIENENGRHIRIASDEVYQDEYELPSGWKTQVQSRQWVDSGMVLAS 1047 Query: 1124 IPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGS 1183 P+ G +K + + ++A ++G V+ L+ S Sbjct: 1048 -PELEGKSKAVVQS--------------DQNVVARVAGEVTVEG------NLITIKYSES 1086 Query: 1184 DPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRL 1243 + E IP Q+ V G+ + G ++DG P DIL + G AV +Y+V EVQ VY Sbjct: 1087 EEREYTIPAAMQIKVKTGDTIRAGQQLTDGSINPQDILSILGRDAVQKYLVEEVQKVYYS 1146 Query: 1244 QGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYS 1303 QGV INDKHIEVI RQML K I ++G +D + GE V+ R + N ++ A G AT Sbjct: 1147 QGVHINDKHIEVIARQMLIKVRIDSSGDTDLVPGELVDKFRYEDINAKVLAEGGEPATAH 1206 Query: 1304 RDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPA 1359 L+GIT+ASL+TES+++AASFQETTRVLT+AA+ G+ D+L GLKENVI+G+LIPA Sbjct: 1207 TVLMGITRASLSTESWLAAASFQETTRVLTDAAIYGRVDKLSGLKENVIIGKLIPA 1262 >UniRef50_UPI00016BFCAD DNA-directed RNA polymerase, beta'''' subunit n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016BFCAD Length = 1244 Score = 909 bits (2348), Expect = 0.0, Method: Composition-based stats. Identities = 518/1218 (42%), Positives = 721/1218 (59%), Gaps = 87/1218 (7%) Query: 17 FDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYK 76 F+ IKI LASPD IR WS GEVKKPETINYRT +PER+GLFC +IFGP KD+EC CGKYK Sbjct: 9 FENIKIGLASPDKIRQWSRGEVKKPETINYRTQRPEREGLFCEKIFGPSKDWECHCGKYK 68 Query: 77 RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIE 136 R++++GVIC++CGVE+T+ KVRRERMGHIELA+P +HIW+ K +PS++GL+LD+ R +E Sbjct: 69 RIRYKGVICDRCGVEITRAKVRRERMGHIELAAPVSHIWYFKGIPSKMGLILDIAPRILE 128 Query: 137 RVLYFESYVVIEGGMTNLER-----QQILTEEQYLDALEEFGDE---------FDAKMGA 182 ++LYF SY++ +R +Q+LTE+++ + + DE F A+MGA Sbjct: 129 KILYFASYIITYVSSEYEKREGISYKQVLTEKEFQEVDRRYNDEARERDGTVAFVAEMGA 188 Query: 183 EAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVL 242 EAI+ LL+ +DLE+E E L+ +L + KR ++ KR++++E+F +G+KPEWMIL V+ Sbjct: 189 EAIKKLLQDIDLEKESETLKTQLVDATG-QKRIRIIKRLEVIESFRLAGSKPEWMILDVI 247 Query: 243 PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEA 302 PVLPPDLRP++ LDGGRFATSDLNDLYRRVINRNNRLKRL+DL AP+IIVRNEKRMLQEA Sbjct: 248 PVLPPDLRPMIQLDGGRFATSDLNDLYRRVINRNNRLKRLVDLGAPNIIVRNEKRMLQEA 307 Query: 303 VDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLR 362 VDAL+DNGRRGR +TG RPLKSL+DM+KGK GRFRQNLLGKRVDYSGRSVI VGPYL+ Sbjct: 308 VDALIDNGRRGRPVTGPGNRPLKSLSDMLKGKSGRFRQNLLGKRVDYSGRSVIVVGPYLK 367 Query: 363 LHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVL 422 ++QCGLPK+MA+ELFKPF+ KL G+A IK AK M+E + +WD+L+EVI+EHPV+ Sbjct: 368 IYQCGLPKEMAIELFKPFVMKKLVSDGIAQNIKNAKNMIESLKTEIWDVLEEVIKEHPVM 427 Query: 423 LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARA 482 LNRAPTLHRLGIQAFEP L+EG+A++LHPLVCAAYNADFDGDQMAVHVPL++EAQ E R Sbjct: 428 LNRAPTLHRLGIQAFEPTLVEGRALKLHPLVCAAYNADFDGDQMAVHVPLSVEAQTECRF 487 Query: 483 LMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLA 542 L+++ NN+L P++G P+ VPSQD+VLG+YY+T D +GEG EA + Sbjct: 488 LLLAPNNLLKPSDGAPVAVPSQDMVLGMYYLTLDRAGEEGEGRYFKDENEAILAXETKEI 547 Query: 543 SLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWM-----------IVPKGLPYSI 591 SLHA++KVR T + T + DTTVGR I P+ Sbjct: 548 SLHAKIKVRRT-----VEFNGQSLTGMTDTTVGRIFFNEAIPQDLGFVKRISPESALKYE 602 Query: 592 VNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKH 651 ++ +GKK + +++ G T I D I GF ++ R +V + DMVIPE+K Sbjct: 603 IDFLVGKKQLGQIIKKSINTHGATKTAILLDSIKDLGFKFSTRGALTVSVSDMVIPERKK 662 Query: 652 EIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDG 711 E ++EAE V ++ F+ GL+T ERYNKVI W AAND++++A++ L Sbjct: 663 EFLAEAEKSVDQVTRLFRRGLMTDEERYNKVIQSWNAANDKITEALLSGLGR-------- 714 Query: 712 QEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQ 771 +N+I+MMADSGARGS QI+QLAGMRGLMA P G IIE PI ANFREGL VL+ Sbjct: 715 -------YNNIFMMADSGARGSNNQIKQLAGMRGLMASPSGRIIELPIKANFREGLTVLE 767 Query: 772 YFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDV 831 YFIS HGARKGLADTALKTA+SGYLTRRLVDV+QD+++ E DC + Sbjct: 768 YFISAHGARKGLADTALKTADSGYLTRRLVDVSQDVIIRELDCNHPIEKTVR-------- 819 Query: 832 KEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTD 891 + D ++G+ A DV+ T +++ ++ + +L+ +++ Sbjct: 820 ITKITDELIGKKLAADVINMTTEEVVAEAGEVITAELFSILKARVPGVKEIKFWQKPKIP 879 Query: 892 FGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQ 951 V + + G AA+ I P T + Sbjct: 880 GMVVSAFKEGTEMIEPLXE--RITGRFAAEDIYNPET--------------GELIIEEDK 923 Query: 952 VKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQV 1011 + + + + + ++ ++T + +G S G + G+ + Sbjct: 924 MITPHLAEYIDSLGITAVRIRTALSCKSTIGVCVKCYGANMSS-----GNQVRIGESVGI 978 Query: 1012 AGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGG 1071 +++ + + T +G + D+ G + E L ++ Sbjct: 979 IAAQSIGEP-GTQLTMRTFHTGGIAGDDITQGLPRIEELFEARKPKGLAIITEFAGEVAI 1037 Query: 1072 KDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGT 1131 ++ + + T Y +P + ++++DG I +GD L Sbjct: 1038 ------IESKKKREISITNADTGEMKSYLIPYGSRIKVKDGDYIEAGDELTEGSINPHDI 1091 Query: 1132 KDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIP 1191 I G+ V D KE + + G+ K + R ++ V + + + Sbjct: 1092 LKI-KGIRGVQD----YMLKEVQRVYRLQGVDINDKHVEVIVRQMMKKVKIEENGDTTLL 1146 Query: 1192 KWRQLNVFEGERVERGDV 1209 ++V E E++ + Sbjct: 1147 PGSLVDVLEYEKINEVTI 1164 Score = 317 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 139/348 (39%), Positives = 192/348 (55%), Gaps = 4/348 (1%) Query: 1024 TMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDA 1083 P+ ++G D+ + +T +E ++ + +R AL Sbjct: 893 IEPLXERITGRFAAEDIYNPETGELIIEEDKMITPHLAEYIDSLGITAVRIRTALSCKST 952 Query: 1084 QGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDTLARIPQESGGT--KDITGGLPR 1140 G V G +M + + V + I G L +GG DIT GLPR Sbjct: 953 IGVCVKCYGANMSSGNQVRIGESVGIIAAQSIGEPGTQLTMRTFHTGGIAGDDITQGLPR 1012 Query: 1141 VADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE 1200 + +LFEAR+PK AI+ E +G V+ E+K KR + IT D + +IP ++ V + Sbjct: 1013 IEELFEARKPKGLAIITEFAGEVAII-ESKKKREISITNADTGEMKSYLIPYGSRIKVKD 1071 Query: 1201 GERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM 1260 G+ +E GD +++G PHDIL+++G+ V Y++ EVQ VYRLQGV INDKH+EVIVRQM Sbjct: 1072 GDYIEAGDELTEGSINPHDILKIKGIRGVQDYMLKEVQRVYRLQGVDINDKHVEVIVRQM 1131 Query: 1261 LRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFI 1320 ++K I G + L G V+ + N G A LLGITKASLATESF+ Sbjct: 1132 MKKVKIEENGDTTLLPGSLVDVLEYEKINEVTIEEGGTPADGKPTLLGITKASLATESFL 1191 Query: 1321 SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD 1368 SAASFQETTRVLT+AA+ GK D L GLKENVI+G+LIPAGTG ++ Sbjct: 1192 SAASFQETTRVLTDAAIKGKVDPLIGLKENVIIGKLIPAGTGMDRYRK 1239 >UniRef50_C9M941 DNA-directed RNA polymerase n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M941_9BACT Length = 1684 Score = 891 bits (2302), Expect = 0.0, Method: Composition-based stats. Identities = 498/1437 (34%), Positives = 748/1437 (52%), Gaps = 173/1437 (12%) Query: 106 ELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQY 165 ++ S T H F P R + V+ Y+VI G + +++ + Sbjct: 278 DVVSATEHDLFCGKYPGRF------TSQKESVVVEDACYLVISSGDSPFAEGEVIVGCEQ 331 Query: 166 LDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLE 225 + +F A GAE ++ +LK +D + ++LREEL+E KR+K+ KR++++E Sbjct: 332 R-ICSRYDKKFKANYGAEGVREILKGIDTDHLAQELREELSEAKG-QKRRKIVKRLQVVE 389 Query: 226 AFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDL 285 F + G +PE M+L VLPV+PPDLRP+V LDGGRFATSDLNDLYRRVINRNNRL RL D Sbjct: 390 EFRRGGCRPESMVLDVLPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLLRLKDT 449 Query: 286 AAPDIIVRNEKRMLQEAVDALLDN---GRRGRAITGSNKRPLKSLADMIKGKQGRFRQNL 342 AP ++ NEKRMLQEAVD+L+DN + G+ + G+ RPLKSL D+++GK+GRFRQNL Sbjct: 450 RAPQLMQHNEKRMLQEAVDSLIDNNRQSKNGKVVLGAGNRPLKSLTDLLRGKKGRFRQNL 509 Query: 343 LGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVE 402 LGKRVDYSGRSVI +GP+L+LHQCGLPK+MALELFKPF+ KL RG+AT +K KK++E Sbjct: 510 LGKRVDYSGRSVIAIGPFLKLHQCGLPKRMALELFKPFVVQKLVERGIATNVKNGKKLIE 569 Query: 403 R-EEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADF 461 R + +WDIL+E+I++HPVLLNRAPTLHRLGIQAFEP+L+EG+AI+LHP+ CAA+NADF Sbjct: 570 RAKNDAIWDILEEIIKDHPVLLNRAPTLHRLGIQAFEPILMEGQAIRLHPMACAAFNADF 629 Query: 462 DGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAK 521 DGDQMAVHVPL++EAQ EAR LM+S+NN+LSPA+G+PI+ P+QD++LGLY++T Sbjct: 630 DGDQMAVHVPLSIEAQTEARMLMLSSNNLLSPASGKPIVSPTQDILLGLYHITNMIEGKP 689 Query: 522 GEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDA----NGELVAKTSLKDTTVGRA 577 G+ + +++R+ +R E + L TT GR Sbjct: 690 GQDHYFRDMDSVMAALDHEIVHVNSRIYLRWDESWHLLLSGGDKFLDDGRKWLITTPGRI 749 Query: 578 ILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGA 637 + ++PK L VN +GKK +S++L+ + ++G V D I G+ +A SG Sbjct: 750 LFNQLLPKALR--FVNIQMGKKDLSRLLDIAFDLVGHNDLVNMLDSIKNLGYHWAGVSGI 807 Query: 638 SVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAM 697 S + +VIP++K +++ E++ +EI+E++ G++T E ++ +W+ A ++ A+ Sbjct: 808 SFQMQAIVIPKEKAKVVDESQKVDSEIREEYDMGILTEDEYLDQKEKLWSGAAKKIGDAI 867 Query: 698 MDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIET 757 ++ + N I MM DSGARGS AQ+ Q+AG+RG+MA P G II+ Sbjct: 868 LEQM---------------DRNNPIRMMIDSGARGSRAQLAQMAGIRGVMADPTGRIIDY 912 Query: 758 PITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTH 817 PIT NFREG+N+L+YFISTHGARKGLADTAL+TA SGYLTRRLVDVAQD++V E+DC T+ Sbjct: 913 PITTNFREGMNMLEYFISTHGARKGLADTALRTAKSGYLTRRLVDVAQDIIVLEEDCHTN 972 Query: 818 EGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSV 877 +G+ + P+I+ G + PL DRV GR + EDV +V +N L+ L++ Sbjct: 973 KGVKIEPLIKDGKIVIPLSDRVTGRTSLEDVDDENG--RVVTKNELITRAQAKRLDDMGR 1030 Query: 878 DAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHI 937 D + VRS ++C++ G+C CYG DL+ + GEA+G++AAQSIGEPGTQLTMRTFH Sbjct: 1031 DHLWVRSPMTCESPNGICRKCYGVDLSARRTVGIGEAVGIVAAQSIGEPGTQLTMRTFHT 1090 Query: 938 GGAASR-AAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRN--TELKLIDE------F 988 GG + + +++ + +V+ +V+ R + K+I E Sbjct: 1091 GGVRTGEDITQGLPRIEQLFEARRPKKVAVLAGLNGVVLEIRELGGKRKVIIEGTAPGSD 1150 Query: 989 GRTKESYKVPYGAVLAKGDGEQVAGGETVAN--WDPHTMPVITEVSGFVRF--------- 1037 +E+Y VP L +G+ V + + DP + + + ++ Sbjct: 1151 VVRRETYTVPGAQALRVTEGQTVTAQTELTDGYIDPQQLLEVMGLEAVQKYLVDSIQEVY 1210 Query: 1038 -------------------------------------TDMIDGQTITRQTDELTGLSSLV 1060 + + ++ +E+ + Sbjct: 1211 ESQGVSINNKHIEVILRKVAPINRVKITDEGDTSFVAGEFAWTSDVEKEIEEIKASNEKN 1270 Query: 1061 VLDSAERTAGGKDLRPALKIV-------------DAQGNDVLIPGTDMPAQYFLPGKAIV 1107 + ++ E G K + + VL PG + YF + + Sbjct: 1271 LTEAVESLKGKKLSDRGGALKGLLPDGAFDKPVTEDVLRKVLAPGGAVTELYFTDEEGPL 1330 Query: 1108 QLEDGVQISSGDTLARIPQESGGTKD----------------ITGGLPRVADLFEARRPK 1151 ++ G + E+ D IT G P + + Sbjct: 1331 RVVVGEAAFRKEMRGMELVEAVTKGDKVVPADEPLTVAQLSVITQGAPVPHMFRSVEKLR 1390 Query: 1152 EPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVIS 1211 + ++ V K ++T P + + + D++ Sbjct: 1391 KQQDEGYVAEAVIAESGVLAKADQLLTEDLIEQIRRSSAPSVKIWK--TVDTISVRDLLQ 1448 Query: 1212 DGPEAPHDILRLR------------GVHAVTRYIVNEVQDVYRLQGVKIND-----KHIE 1254 + +L+ VH V +V + + ++QG+ D + E Sbjct: 1449 ERLINRIWGRQLKLAIGADGQALSGSVHMVDGSVVKGIVEG-QIQGLVFADDSNTSRETE 1507 Query: 1255 V---IVRQMLRKATIVN----AGSSDFLEGEQVEYSRVKIANRE---------------- 1291 + + + K + + G+ G+++ ++ Sbjct: 1508 LTEALSSVVSGKVLLEDVKNSDGTVALQAGQEIGKKQLAKIVAADPTILTVRPVLDQTET 1567 Query: 1292 --------LEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDE 1343 ++G + + G+TKA+LAT+SF+SAASFQ+T ++L AAV + D Sbjct: 1568 VQLISRVSFVRRLRLGPQWRPFIHGVTKAALATDSFLSAASFQQTAQILAGAAVRNQVDH 1627 Query: 1344 LRGLKENVIVGRLIPAGTGYAYHQD-RMRRRAAGEAPAAPQVTAEDASASLAELLNA 1399 L GLKENVI+G LIPAGTG Q + RR + P A TA A S E + Sbjct: 1628 LMGLKENVIIGHLIPAGTGIERFQSVSVERRKGSDEPVAVGETACAAEDSCGETTDV 1684 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 90/194 (46%), Positives = 117/194 (60%), Gaps = 16/194 (8%) Query: 15 EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74 E +++ L D IR S+GEVKKPETINYRT KPERDGLFC RIFGP K YEC CGK Sbjct: 4 REIVGVRVKLGDADEIRKLSYGEVKKPETINYRTLKPERDGLFCERIFGPTKSYECACGK 63 Query: 75 YK--RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPL 132 YK K +GV+C+ CGVEVT VRRERMGHIELA+P H+W+L+ PSR+ LLL P Sbjct: 64 YKKSGPKFQGVVCDHCGVEVTDKSVRRERMGHIELAAPVVHLWYLRGTPSRLSLLLGTPT 123 Query: 133 RDIERVLYFESYVVIEGGM---------TNLERQQILTEEQYLDALEEFGDEFDAKMGAE 183 +D+E+V+YF + E + ++++E + L + +F AE Sbjct: 124 KDLEKVIYFAANRRREEAYLVVIEGKYPEVAPKGRVISESE-RRCLSHYDRKFR----AE 178 Query: 184 AIQALLKSMDLEQE 197 LL D++ E Sbjct: 179 VAYRLLTVDDIDLE 192 >UniRef50_D1C2J9 DNA-directed RNA polymerase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C2J9_SPHTD Length = 1479 Score = 885 bits (2286), Expect = 0.0, Method: Composition-based stats. Identities = 485/1003 (48%), Positives = 644/1003 (64%), Gaps = 48/1003 (4%) Query: 150 GMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETN 209 +++L+ Q+LTE QY +A+E F A MGAEA+ ++ MDL++ +LR+E++ + Sbjct: 331 AISDLKPLQVLTETQYREAMELAPGVFKAGMGAEAVYEVVSKMDLDKLSAELRQEIH-SV 389 Query: 210 SETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLY 269 S +RKK KR++++EA +SGN+PEWMI TVLPV+PPDLRP+V LDGGRFATSDLNDLY Sbjct: 390 SGQRRKKAAKRLRVVEALRKSGNRPEWMIFTVLPVIPPDLRPMVQLDGGRFATSDLNDLY 449 Query: 270 RRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLAD 329 RRVINRNNRLKRLL+L APDIIVRNEKRMLQEAVDAL+DNGRRGR ++GS K LKSL+D Sbjct: 450 RRVINRNNRLKRLLELGAPDIIVRNEKRMLQEAVDALIDNGRRGRVVSGSGKHKLKSLSD 509 Query: 330 MIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRG 389 M+KGKQGRFRQNLLGKRVDYSGRSVI VGP L+LHQCGLPK+MALELFKPF+ KL +G Sbjct: 510 MLKGKQGRFRQNLLGKRVDYSGRSVIVVGPDLKLHQCGLPKRMALELFKPFVMQKLVAQG 569 Query: 390 LATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQL 449 A IKAAK++VER + VWD+L++VI ++ VLLNRAPTLHRLGIQAFE LIEG AIQL Sbjct: 570 YAHNIKAAKRLVERVDPHVWDVLEQVIADYLVLLNRAPTLHRLGIQAFEVKLIEGSAIQL 629 Query: 450 HPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLG 509 HPLVCAA+NADFDGDQMAVHVPL+ AQ EAR M+ST N+L P++G+P+I P+QD+VLG Sbjct: 630 HPLVCAAFNADFDGDQMAVHVPLSAAAQQEARERMLSTRNLLDPSDGDPVITPTQDIVLG 689 Query: 510 LYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSL 569 YYMT A+GEG V GP E E YR+G+ L A++KVR+ + L Sbjct: 690 CYYMTLPRPGARGEGKVFAGPHEVELAYRTGVVDLQAQIKVRLELNG--------SGPQL 741 Query: 570 KDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGF 629 DTTVGR +L ++P L N+ + +KA+ +++ CYR LG + T AD I GF Sbjct: 742 VDTTVGRVLLNEVIPDEL--GFWNETMDRKALRRLVAACYRELGPEVTAEMADNIKTIGF 799 Query: 630 AYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAA 689 YA + G ++G+ D+ IPE K II+ A+A+V E++ Q++ GL+T ER+ +V++IW A Sbjct: 800 NYATKGGLTIGLTDVHIPESKEAIIAAADAKVEEVERQYRRGLITDAERHREVVNIWNDA 859 Query: 690 NDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAK 749 D ++KA+ L N++YMM+ SGA+G+ QI Q+AGMRGLM Sbjct: 860 RDELAKAVEAGLGVN---------------NALYMMSTSGAKGNINQISQMAGMRGLMLD 904 Query: 750 PDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVV 809 P G II+ PI +NFREGL+VL+YFISTHGARKGLADTAL+TA+SGYLTRRLVDVAQD++V Sbjct: 905 PGGKIIDLPIRSNFREGLSVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVAQDVIV 964 Query: 810 TEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWC 869 T DDCGT EG+ + ++ E R++GR+ A+ V+ P T +ILV RN + E Sbjct: 965 TVDDCGTEEGMRIE--VDSMPDTESFIGRIVGRMAAQPVVDPNTGEILVERNGEITEAIA 1022 Query: 870 DLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQ 929 L V V VR+ + C+ + GVC +CYGR+LA G +++ GEA+G+IAAQSIGEPGTQ Sbjct: 1023 RDLVARGVPRVDVRTPMQCEAEHGVCRYCYGRNLASGQLVDLGEAVGIIAAQSIGEPGTQ 1082 Query: 930 LTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKL--VITSRNTELKLIDE 987 LTMRTFH GG A +V+ + K+++ + ++ + L+ Sbjct: 1083 LTMRTFHTGGVAGEDITTGLPRVEELFEAREPKGKAILAEHDGVVHIVEDESGRRILLSR 1142 Query: 988 FGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDP--HTMPVITEVSGFVRFTDMIDGQT 1045 + +P G + DGE VA G+ +A+ PV+ + G V Sbjct: 1143 EEIVTDVMALPEGYQVLVADGETVAVGQVLASPPEGVEGDPVVASMDGVVFLDGQEFV-- 1200 Query: 1046 ITRQTDELTGLSSLVVLDSAE-RTAGGKDLRPALKIVDAQ---GNDVLIPGTDMPAQYFL 1101 E T + V SA R G + ++ D + G +Y + Sbjct: 1201 ---LRHEETQTTEYQVPASAHIRVNDGDTVTTGTQLTDGNLDPQQILQTMGRAAVQRYLV 1257 Query: 1102 PGKAIVQLEDGV-------QISSGDTLARIPQESGGTKDITGG 1137 V GV ++ L ++ E G D+ G Sbjct: 1258 DEVQKVYKSQGVVTNDKHIEVIVRQMLRKVAVEDPGDTDLLVG 1300 Score = 243 bits (619), Expect = 5e-62, Method: Composition-based stats. Identities = 150/520 (28%), Positives = 224/520 (43%), Gaps = 67/520 (12%) Query: 895 CAHCYGRDLARGHIIN----KGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSI 950 C G + + + G +G +AAQ + +P T I Sbjct: 969 CGTEEGMRIEVDSMPDTESFIGRIVGRMAAQPVVDPNT-------------------GEI 1009 Query: 951 QVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQ 1010 V+ G I + + +V + + T ++ E G + Y + GE Sbjct: 1010 LVERNGEITEAIARDLV--ARGVPRVDVRTPMQCEAEHGVCRYCYGRNLASGQLVDLGEA 1067 Query: 1011 V--AGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERT 1068 V +++ + + T +G V D+ G + E + + Sbjct: 1068 VGIIAAQSIGEP-GTQLTMRTFHTGGVAGEDITTGLPRVEELFEA--------REPKGKA 1118 Query: 1069 AGGKDLRPALKIVDAQGNDVLIPGTDMPAQYF-LPGKAIVQLEDGVQISSGDTLARIPQE 1127 + + D G +L+ ++ LP V + DG ++ G LA P+ Sbjct: 1119 ILAEHDGVVHIVEDESGRRILLSREEIVTDVMALPEGYQVLVADGETVAVGQVLASPPEG 1178 Query: 1128 SGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYE 1187 G ++A + G+V + + + + E Sbjct: 1179 VEGD----------------------PVVASMDGVVFLDGQE------FVLRHEETQTTE 1210 Query: 1188 EMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVK 1247 +P + V +G+ V G ++DG P IL+ G AV RY+V+EVQ VY+ QGV Sbjct: 1211 YQVPASAHIRVNDGDTVTTGTQLTDGNLDPQQILQTMGRAAVQRYLVDEVQKVYKSQGVV 1270 Query: 1248 INDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLL 1307 NDKHIEVIVRQMLRK + + G +D L GE ++ N E+ A G AT + LL Sbjct: 1271 TNDKHIEVIVRQMLRKVAVEDPGDTDLLVGELIDRFTFNRINEEIIAEGGEPATAQQVLL 1330 Query: 1308 GITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQ 1367 GITKASLATESF+SAASFQETTRVLTEAA+ GK D LRGLKENVI+G+LIPAG+G+ + Sbjct: 1331 GITKASLATESFLSAASFQETTRVLTEAAIHGKVDYLRGLKENVIIGKLIPAGSGFWARK 1390 Query: 1368 DRMRRRAAGEAP--AAPQVTAEDASASLAELLNAGLGGSD 1405 + A + AA Q S+ E+ G + Sbjct: 1391 RKAEGLTAHDEASLAAMQEEQLRQPTSIEEVKEQLEGQAS 1430 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 101/175 (57%), Positives = 125/175 (71%) Query: 6 KFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPV 65 + +FDAI+I+LASP+ IRSWS GEV KPETINYRT +PE GLFC RIFGP Sbjct: 11 RDSHQGLDVNDFDAIRISLASPEAIRSWSHGEVTKPETINYRTLRPEHGGLFCERIFGPT 70 Query: 66 KDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIG 125 +D+EC CGKYKR++H G IC+KCGVEVT++KVRRERMGHIELA+P AHIW++K PSR+G Sbjct: 71 RDFECYCGKYKRVRHAGTICDKCGVEVTRSKVRRERMGHIELAAPVAHIWYVKGTPSRLG 130 Query: 126 LLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKM 180 LLLD+ R++ERVLYF SY+V E E E+ L E E +A+ Sbjct: 131 LLLDISPRNLERVLYFASYLVTEVDEEKREALIREIYEELEAELAELDRELEART 185 >UniRef50_C4ZB95 DNA-directed RNA polymerase n=5 Tax=Firmicutes RepID=C4ZB95_EUBR3 Length = 1282 Score = 879 bits (2272), Expect = 0.0, Method: Composition-based stats. Identities = 499/1151 (43%), Positives = 690/1151 (59%), Gaps = 95/1151 (8%) Query: 1 MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60 M + Q +FDAI+I LASP+ IR WS GEVKKPETINYRT KPE+DGLFC + Sbjct: 1 MPETNNIENNQA--MQFDAIQIGLASPEKIREWSHGEVKKPETINYRTLKPEKDGLFCEK 58 Query: 61 IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120 IFGP KD+EC CGKYK+++++GV+C++CGVE+T++ VRRERMGHIELA+P +HIW+ K + Sbjct: 59 IFGPTKDWECHCGKYKKIRYKGVVCDRCGVEITKSSVRRERMGHIELAAPVSHIWYFKGI 118 Query: 121 PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDE-FDAK 179 PSR+GL+LD+ R +ERVLYF SY+V++ G T L +QIL E +Y +A + +G F Sbjct: 119 PSRMGLILDLSPRVLERVLYFASYIVLDPGETKLAYKQILNESEYQEACDTYGRSAFRVG 178 Query: 180 MGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMIL 239 MGAE+I+ LL ++DLE++ +L+ EL KR ++ KR++++EAF +SGNKPEWMI+ Sbjct: 179 MGAESIRELLAAIDLEKDSAELKAELENATG-QKRARIIKRLEVVEAFRESGNKPEWMIM 237 Query: 240 TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRML 299 TV+PV+PPDLRP+V LDGGRFATSDLNDLYRR+INRNNRL+RLLDL APDIIVRNEKRML Sbjct: 238 TVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRIINRNNRLRRLLDLGAPDIIVRNEKRML 297 Query: 300 QEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP 359 QEAVDAL+DNGRRGR +TG R LKSL+DM+KGK GRFRQNLLGKRVDYSGRSVI V P Sbjct: 298 QEAVDALIDNGRRGRPVTGPGNRALKSLSDMLKGKGGRFRQNLLGKRVDYSGRSVICVEP 357 Query: 360 YLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREH 419 L+++QCGLPK+MA+ELFKPF+ +L G A IK+AKKMVER + VWD+L++VI+EH Sbjct: 358 KLKIYQCGLPKEMAIELFKPFVMKELAANGTAHNIKSAKKMVERLQPEVWDVLEDVIKEH 417 Query: 420 PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLE 479 PV+LNRAPTLHRLGIQAFEP+L+EGKAI+LHPLVC A+NADFDGDQMAVH+PLT EAQ E Sbjct: 418 PVMLNRAPTLHRLGIQAFEPILVEGKAIKLHPLVCTAFNADFDGDQMAVHLPLTAEAQAE 477 Query: 480 ARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGE----------GMVLTG 529 R +++S NN+L P++G + VPSQD++LG+YY+T + + V Sbjct: 478 CRFMLLSPNNLLKPSDGGLVAVPSQDMILGVYYLTMRKLADYKDDPKMVAQVSSDTVYND 537 Query: 530 PKEAERLYRSGLASLHARVKVRITEYEKDANG----ELVAKTSLKDTTVGRAILWMIVPK 585 E +L + A + + + +D L L G L M+ + Sbjct: 538 VDELRKLTTPDENTGKAELGLYDLIWFEDVTDGNRRVLCRPIDLLGRYYGSVNLAMLAYE 597 Query: 586 GLPYSIVN--------QALGKKAISKM----LNTCYRILGLKPTVIFADQ---------- 623 ++ + +S + + + F D+ Sbjct: 598 NKEITLHQNIFVHRTVKLADGTEVSGFTETTVGLLIFNENIPQDLGFIDRSKAENALKFE 657 Query: 624 ---------IMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSG--- 671 I GA+ E++ +A + Q Sbjct: 658 VEFHVGKKQIKQILEKVINTHGAT----------TTAEVLDNVKAMGYKYSTQAAMTVSI 707 Query: 672 -LVTAGERYNKVIDIWAAANDRVS--------------KAMMDNLQTETVINRDGQEEKQ 716 +T + ++I D+++ K +++ + Sbjct: 708 SDMTVPPQKPQMIADAQDTVDKITRQYKRGLITDEERYKEVIETWKDTDDALTKALLTGL 767 Query: 717 VSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFIST 776 +N+I+MMADSGARGS QI+QLAGMRGLMA G IE PI + FREGL+VL+YF+S Sbjct: 768 DKYNNIFMMADSGARGSDKQIKQLAGMRGLMADTTGRTIELPIKSCFREGLDVLEYFMSA 827 Query: 777 HGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDC--GTHE---GIMMTPVIEGGDV 831 HGARKGL+DTAL+TA+SGYLTRRLVDV+Q ++V E DC GT G+++ +EG + Sbjct: 828 HGARKGLSDTALRTADSGYLTRRLVDVSQHMIVRETDCCAGTGREIPGMVVKAFMEGREE 887 Query: 832 KEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDA-------VKVRS 884 E L++R+ GR + + +++V N ++ + + VD VK+R+ Sbjct: 888 IESLQERITGRFSCNTICDK-DGNVIVKANHMITPKRAAKVMAEGVDENGNPITQVKIRT 946 Query: 885 VVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRA 944 V++C + GVCA CYG +LA G + GEAIG+IAAQSIGEPGTQLTMRTFH GG A Sbjct: 947 VLTCRSHMGVCAKCYGSNLATGQAVQVGEAIGIIAAQSIGEPGTQLTMRTFHTGGVAGGD 1006 Query: 945 AAESSIQVKNKGSIKLSNVKSVVNSSGKLVIT---SRNTELKLIDEFGRTKESYKVPYGA 1001 + +V+ + +++ G + E+ + + ++Y +PYG+ Sbjct: 1007 ITQGLPRVEEIFEARKPKGLAIITEFGGTATIKDTKKKREVIVTNNETGETKAYLIPYGS 1066 Query: 1002 VLAKGDGEQVAGGETVAN--WDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSL 1059 + DG+++ G+ + +PH + I V + + Q E+ Sbjct: 1067 RIKVVDGQELEAGDELTEGSVNPHDILKIKGVRAVQDYMLREVQRVYRLQGVEINDKHVE 1126 Query: 1060 VVLDSAERTAG 1070 V++ + Sbjct: 1127 VIVRQCLQKIR 1137 Score = 300 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 134/313 (42%), Positives = 184/313 (58%), Gaps = 4/313 (1%) Query: 1062 LDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDT 1120 +D +R L G G+++ + + + I G Sbjct: 932 VDENGNPITQVKIRTVLTCRSHMGVCAKCYGSNLATGQAVQVGEAIGIIAAQSIGEPGTQ 991 Query: 1121 LARIPQESGGT--KDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVIT 1178 L +GG DIT GLPRV ++FEAR+PK AI+ E G + K+TK KR +++T Sbjct: 992 LTMRTFHTGGVAGGDITQGLPRVEEIFEARKPKGLAIITEFGGTATI-KDTKKKREVIVT 1050 Query: 1179 PVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQ 1238 + + +IP ++ V +G+ +E GD +++G PHDIL+++GV AV Y++ EVQ Sbjct: 1051 NNETGETKAYLIPYGSRIKVVDGQELEAGDELTEGSVNPHDILKIKGVRAVQDYMLREVQ 1110 Query: 1239 DVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKV 1298 VYRLQGV+INDKH+EVIVRQ L+K + G SD L G V+ N +LE GK Sbjct: 1111 RVYRLQGVEINDKHVEVIVRQCLQKIRVEEPGDSDLLPGSMVDALDFLELNEKLEEEGKE 1170 Query: 1299 GATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIP 1358 A S+ LLGITKASLAT SF+SAASFQETT+VLTEAA+ GK D L G+KENVI+G+LIP Sbjct: 1171 LAVGSQVLLGITKASLATNSFLSAASFQETTKVLTEAAIKGKVDPLIGMKENVIIGKLIP 1230 Query: 1359 AGTGYAYHQDRMR 1371 AGTG +++ Sbjct: 1231 AGTGMKIYRNIKL 1243 >UniRef50_D1B5Y2 DNA-directed RNA polymerase n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B5Y2_THEAS Length = 1651 Score = 877 bits (2266), Expect = 0.0, Method: Composition-based stats. Identities = 452/1133 (39%), Positives = 663/1133 (58%), Gaps = 54/1133 (4%) Query: 139 LYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQEC 198 L ++VIE G + ER I+TE + + F A +GAE + LLK +DL+ Sbjct: 294 LEDPCHIVIEKGESPFERGDIITESE-EYLCSRYDKSFMAGIGAEGVLELLKRIDLDDLA 352 Query: 199 EQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGG 258 LREE+ E+ S K++KL KR++++E F +S ++PEWMIL+VLPV+PPDLRP+V LDGG Sbjct: 353 TSLREEIAES-SGQKKRKLVKRLQVVEDFRKSDSRPEWMILSVLPVIPPDLRPMVQLDGG 411 Query: 259 RFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITG 318 RFATSDLNDLYR+VINRNNRLK+L++L AP+II+RNEKRMLQE+VDAL+DNGRRG+ + G Sbjct: 412 RFATSDLNDLYRKVINRNNRLKKLMELRAPEIIIRNEKRMLQESVDALIDNGRRGKPVPG 471 Query: 319 SNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFK 378 + RPLKSL D+++GK+GRFRQNLLGKRVDYSGRSVI +GP L+++QCGLPK+MALELFK Sbjct: 472 AGGRPLKSLTDLLRGKKGRFRQNLLGKRVDYSGRSVIVIGPNLKIYQCGLPKQMALELFK 531 Query: 379 PFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFE 438 PF+ KL RGLA +K A++++ER + VW IL+E+I++HPVLLNRAPTLHRLGIQAFE Sbjct: 532 PFVVHKLVERGLAANVKNARRLIERGKDEVWAILEEIIKDHPVLLNRAPTLHRLGIQAFE 591 Query: 439 PVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEP 498 PVLIEGKAI+LHPLVC A+NADFDGDQMAVHVPL+LEAQ EAR LM+S+NN+LSP++G+P Sbjct: 592 PVLIEGKAIRLHPLVCTAFNADFDGDQMAVHVPLSLEAQAEARILMLSSNNLLSPSSGKP 651 Query: 499 IIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKD 558 I+ P+QD++LG+YY+T + KG+GM ++ G+ ++ARV VR Sbjct: 652 IVTPTQDIILGVYYLTGMKPDLKGDGMYFRDEEDVLSALDHGVVHVNARVYVRNRPEWGL 711 Query: 559 ANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTV 618 + + +T+ GR + +P+ L +N+ LGKK +L+ Y ++G V Sbjct: 712 GEDKWL------ETSPGRVVFNCAMPEKLR--FINRQLGKKDFGALLDRAYDLVGQAAMV 763 Query: 619 IFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGER 678 D I G+ ++ +SG S+GI D+++P +K I+ E E+ Q+ G++T E Sbjct: 764 EMLDGIKQLGYKWSTKSGISLGIGDVIVPPQKESIVRETMVHEEELSAQYDMGILTEDEY 823 Query: 679 YNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIR 738 + +W+ A + ++DN+ + N + +M DSGARGS +Q+ Sbjct: 824 MRQKDALWSEAVKNIVDKIVDNMDVD---------------NPLRIMVDSGARGSKSQVA 868 Query: 739 QLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTR 798 Q+AG+RGLMA P G II+ PI +NFR+GLN+L+YFISTHGARKGL+DTA++TA SGYLTR Sbjct: 869 QMAGIRGLMADPSGKIIDYPIVSNFRDGLNMLEYFISTHGARKGLSDTAMRTAKSGYLTR 928 Query: 799 RLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILV 858 RLVDVAQDL++TE+DCGT G+ M P+ + V PL +RV GRV DV+ LV Sbjct: 929 RLVDVAQDLIITEEDCGTDRGVEMRPLKQESKVVIPLSERVAGRVALRDVIL-SDGTCLV 987 Query: 859 PRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVI 918 + ++ L+ V++V VRS ++C G+C CYG+DLA H + GEA+GV+ Sbjct: 988 RAGQEIDQETAKALDRAGVESVWVRSPLTCALRHGICRTCYGKDLATRHRVAIGEAVGVV 1047 Query: 919 AAQSIGEPGTQLTMRTFHIGGA---ASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVI 975 AAQSIGEPGTQLTMRTFH GG + +++ ++ +++ +V+ Sbjct: 1048 AAQSIGEPGTQLTMRTFHTGGVRQFTGEDITQGLPRIEQLFEVRKPKKAALIAEHDGVVV 1107 Query: 976 TSRNTELKLI-------DEFGRTKESYKVPYGAVLA--KGDGEQVAGGETVAN--WDPHT 1024 R E K ++ G + Y +P L +G + G+ + DP Sbjct: 1108 ERREGEGKKKLVVAVPREDGGEDRVVYTLPASQNLLPGVEEGAPIHRGQVLTEGYIDPQQ 1167 Query: 1025 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ 1084 + + + R+ Q + V+L + + Sbjct: 1168 LLEVEGLEAVQRYILDGIQDVYRSQGVSINDKHIEVILRKVAPVNRVRVIEE-------- 1219 Query: 1085 GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLA-RIPQESGGTKDITGGLPRVAD 1143 G+ + G + + + ++ + L + +++ G+ D T G+ R + Sbjct: 1220 GDSSFVAGELVWKEDLEAESRRISEQNARFLEEASFLCGAVVKDAVGSLDGT-GITRDEE 1278 Query: 1144 LFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGER 1203 L K +L+ G + + VI E + L V +G Sbjct: 1279 L---TMDKLGRLLSPGVGASELICQDREGLLRVIVGEASFKRELEGLELLSDLPVADGCV 1335 Query: 1204 VERGDVISDGPEA-PHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEV 1255 + G ++ + + + + + + V +VY + V ++ + + + Sbjct: 1336 ISAGSRLTASDASRIVAMGPQPLLVKDLKAMEDMVGEVYLAEDVTVDGRVLSL 1388 Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 104/391 (26%), Positives = 170/391 (43%), Gaps = 39/391 (9%) Query: 1017 VANWDPHTMPVITEVSGFVRFTDMIDGQ--TITRQTDELTGLSSLVVLDSAERTAGGKDL 1074 + +P+ V+G V D+I + R E+ ++ + + + + Sbjct: 955 LKQESKVVIPLSERVAGRVALRDVILSDGTCLVRAGQEIDQETAKALDRAGVESV---WV 1011 Query: 1075 RPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDTLARIPQESGGT-- 1131 R L G G D+ ++ + V + I G L +GG Sbjct: 1012 RSPLTCALRHGICRTCYGKDLATRHRVAIGEAVGVVAAQSIGEPGTQLTMRTFHTGGVRQ 1071 Query: 1132 ---KDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVI---TPVDGSDP 1185 +DIT GLPR+ LFE R+PK+ A++AE G+V +E +GK++LV+ G D Sbjct: 1072 FTGEDITQGLPRIEQLFEVRKPKKAALIAEHDGVVVERREGEGKKKLVVAVPREDGGEDR 1131 Query: 1186 YEEMIPKWRQL--NVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRL 1243 +P + L V EG + RG V+++G P +L + G+ AV RYI++ +QDVYR Sbjct: 1132 VVYTLPASQNLLPGVEEGAPIHRGQVLTEGYIDPQQLLEVEGLEAVQRYILDGIQDVYRS 1191 Query: 1244 QGVKINDKHIEVIVRQM--LRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGAT 1301 QGV INDKHIEVI+R++ + + ++ G S F+ GE V ++ +R + Sbjct: 1192 QGVSINDKHIEVILRKVAPVNRVRVIEEGDSSFVAGELVWKEDLEAESRRISEQNAR--- 1248 Query: 1302 YSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGT 1361 L SF+ A ++ L + RDE + + +GRL+ G Sbjct: 1249 -----------FLEEASFLCGAVVKDAVGSLDGTGIT--RDEELTMDK---LGRLLSPGV 1292 Query: 1362 GYA--YHQDRMRRRAAGEAPAAPQVTAEDAS 1390 G + QDR A+ + E Sbjct: 1293 GASELICQDREGLLRVIVGEASFKRELEGLE 1323 Score = 166 bits (420), Expect = 6e-39, Method: Composition-based stats. Identities = 87/174 (50%), Positives = 118/174 (67%), Gaps = 10/174 (5%) Query: 15 EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74 +E +++ L+SP+ IR+ S GEVKKPETINYRT +PE+DGLFC RIFGP + +EC CGK Sbjct: 4 KEIVGVRVKLSSPERIRAISCGEVKKPETINYRTLRPEKDGLFCERIFGPTRSFECACGK 63 Query: 75 YKRL--KHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPL 132 YKR K +GV+C++CGVEVT +VRRERMGHIELA+P HIW+L+ +PSR+ LL+ Sbjct: 64 YKRSGPKFKGVVCDRCGVEVTDNRVRRERMGHIELAAPVVHIWYLRGIPSRLSLLIGTST 123 Query: 133 RDIERVLYF--------ESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDA 178 +D+ERV+YF VV+EG T+L R+ + + +F A Sbjct: 124 KDLERVVYFAPNRRREAAYKVVVEGRRTDLVRRGDVISASEERIHRFYDSKFKA 177 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 58/201 (28%), Positives = 91/201 (45%), Gaps = 19/201 (9%) Query: 1203 RVERGDVISDGPEAPHDI--LRLRGVHAVTRYIVNE-------VQDVYRLQGVKINDKHI 1253 +E + I G ++ + V + ++ E ++ V + G + Sbjct: 1456 SMEIAEGIRSGEVEAIELDGNNVVSRERVLKALLTEKVYGKVLLEPVRDVDGNVVVPSGR 1515 Query: 1254 EVIVRQMLRKATIVNAGSSDFLE----GEQVEYSRVKIANRELEANGKVGATYSRDLLGI 1309 EV Q++ + G GE ++ + T+ L GI Sbjct: 1516 EV-SHQVMDQIVAACPGEMVVRPILAQGE--HRRLIQRI--SFVRRLRELPTWKPVLHGI 1570 Query: 1310 TKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD- 1368 TKA+LAT+SF+SAASFQ+T +VL AAV G+ D L GLKENVI+G LIP+GTG ++ Sbjct: 1571 TKAALATDSFLSAASFQQTAQVLASAAVRGEVDNLLGLKENVIIGLLIPSGTGIDKYRKV 1630 Query: 1369 RMRRRAAGEAPAAPQVTAEDA 1389 ++ GE + + E A Sbjct: 1631 QVVEPRTGEGGSDLFESGESA 1651 >UniRef50_O14802 DNA-directed RNA polymerase III subunit RPC1 n=30 Tax=Eumetazoa RepID=RPC1_HUMAN Length = 1390 Score = 876 bits (2263), Expect = 0.0, Method: Composition-based stats. Identities = 269/1522 (17%), Positives = 500/1522 (32%), Gaps = 306/1522 (20%) Query: 4 LLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFK-PERDGLFCARIF 62 + + + ++ I + SP+ +R + +V + P G+ R+ Sbjct: 2 VKEQFRETDVAKKISHICFGMKSPEEMRQQAHIQVVSKNLYSQDNQHAPLLYGVLDHRMG 61 Query: 63 GPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPS 122 KD CE CG + G+I+L P H+ + +++ Sbjct: 62 TSEKDRP---------------CETCGKNLADC---LGHYGYIDLELPCFHVGYFRAVIG 103 Query: 123 RIGLLLDMPLRDIERVLYFESYV--VIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKM 180 + ++ + + ++ + G+T L+++ + + + A Sbjct: 104 ILQMICKTCCHIMLSQEEKKQFLDYLKRPGLTYLQKRGLKKKISDKCRKKNICHHCGAFN 163 Query: 181 G--------------------------AEAIQALLKSMDLEQECEQL----REELNETNS 210 G + +Q+ +++ +E E L +E LN Sbjct: 164 GTVKKCGLLKIIHEKYKTNKKVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQENLNPLVV 223 Query: 211 ETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGR-FATSDLNDLY 269 K++ L KP +ILT L V P +RP V D DL Sbjct: 224 LNLFKRIPAEDVPLLLMNPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKL 283 Query: 270 RRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLAD 329 +I N+ +K+ A ++ + LQ +++ G + + K+ + Sbjct: 284 TEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQ 343 Query: 330 MIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRG 389 +KGKQGRFR NL GKRVD+SGR+VI+ P LR+ + +P +A L P K + Sbjct: 344 RLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINF 403 Query: 390 LATT------IKAAKKMVEREEAVVWD-------------------ILDEVIREHPVLLN 424 L + +++ + + +I VL N Sbjct: 404 LRKLVQNGPEVHPGANFIQQRHTQMKRFLKYGNREKMAQELKYGDIVERHLIDGDVVLFN 463 Query: 425 RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 484 R P+LH+L I A + + + + VC YNADFDGD+M +H+P T EA+ EA LM Sbjct: 464 RQPSLHKLSIMAHLARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLM 523 Query: 485 MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL 544 + N+++P NGEP+I QD + G Y +T L Sbjct: 524 GTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRL 583 Query: 545 HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYS-------------- 590 I + G+ + L+ + + Sbjct: 584 P---PPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKGEDLCANDSYVTI 640 Query: 591 ----IVNQALGKKAISK-----MLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGI 641 +++ ++ K + + R G ++ Y + G S+GI Sbjct: 641 QNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGI 700 Query: 642 DDMV----IPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAM 697 D+ + + K+E+++ + E E +G + A + + + Sbjct: 701 GDVTPGQGLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGC--------TAEETLEALI 752 Query: 698 MDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMA-----KPDG 752 + L + NS MA G++GS I Q+ G A PDG Sbjct: 753 LKELSVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDG 812 Query: 753 SI---------------IETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLT 797 + + +F GL ++F T R+GL DTA+KTA +GY+ Sbjct: 813 FENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQ 872 Query: 798 RRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEP----------------------- 834 RRLV +DL D + I GGD +P Sbjct: 873 RRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIKAVF 932 Query: 835 --------------LRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAV 880 L + + + + + + E+ ++ ++ Sbjct: 933 PCPSEPALSKNELILTTESIMKKSEFLCCQDSFLQEIKKFIKGVSEKIKKTRDKYGINDN 992 Query: 881 KVRSVVSCDTDFGVC------AHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRT 934 + RD + G A+G + AQSIGEPGTQ+T++T Sbjct: 993 GTTEPRVLYQLDRITPTQVEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKT 1052 Query: 935 FHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKES 994 FH G AS + +K ++N+S + +L + + Sbjct: 1053 FHFAGVASMNITLGVPR-----------IKEIINASKAISTPIITAQL----DKDDDADY 1097 Query: 995 YKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELT 1054 ++ G + + + V F+ Sbjct: 1098 ARLVKGRI----------EKTLLGEISEYIEEVFLPDDCFIL------------------ 1129 Query: 1055 GLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQ 1114 +K+ + + + +Y + + ++++ G Sbjct: 1130 -----------------------VKLSLERIRLLRLEVNAETVRYSICT-SKLRVKPGDV 1165 Query: 1115 ISSGD-TLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKR 1173 G+ + P+E+ + + V + PK V + R Sbjct: 1166 AVHGEAVVCVTPRENSKSS-----MYYVLQFLKEDLPK-----------VVVQGIPEVSR 1209 Query: 1174 RLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYI 1233 ++ +++ + L +G + +++ + G+ A I Sbjct: 1210 AVIHIDEQSGKEKYKLLVEGDNLRAVMATHGVKGTRTT--SNNTYEVEKTLGIEAARTTI 1267 Query: 1234 VNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELE 1293 +NE+Q G+ I+ +H+ ++ M Sbjct: 1268 INEIQYTMVNHGMSIDRRHVMLLSDLMT-------------------------------- 1295 Query: 1294 ANGKVGATYSRDLLGITKASLA--TESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 Y ++LGIT+ LA ES + ASF++T L +AA G++D + G+ E + Sbjct: 1296 --------YKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECI 1347 Query: 1352 IVGRLIPAGTGYAYHQDRMRRR 1373 I+G + GTG + R Sbjct: 1348 IMGIPMNIGTGLFKLLHKADRD 1369 >UniRef50_B9KZZ3 DNA-directed RNA polymerase n=2 Tax=Bacteria RepID=B9KZZ3_THERP Length = 1459 Score = 876 bits (2262), Expect = 0.0, Method: Composition-based stats. Identities = 486/1002 (48%), Positives = 645/1002 (64%), Gaps = 53/1002 (5%) Query: 157 QQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKK 216 Q+LTE+QY D + F+AKMGAEA+ ++ SMDL+Q QLR E+ + ++K+ Sbjct: 335 LQVLTEQQYRDLADLAPGVFEAKMGAEAVYEVVSSMDLDQLSAQLRAEMAQATG-QRQKR 393 Query: 217 LTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRN 276 + KR++L+EA +SGN+PEWM+LTVLPV+PPDLRP+V LDGGRFATSDLNDLYRRVINRN Sbjct: 394 IAKRLRLVEALRKSGNRPEWMLLTVLPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRN 453 Query: 277 NRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQG 336 NRLKRLL+L APDII+RNEKRMLQEAVDAL+DNGRRGR ++G++K LKSL+DM+KGKQG Sbjct: 454 NRLKRLLELGAPDIIIRNEKRMLQEAVDALIDNGRRGRVVSGTSKHKLKSLSDMLKGKQG 513 Query: 337 RFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKA 396 RFRQNLLGKRVDYSGRSVI VGP L+LHQCGLPK+MALELFKPF+ +L + G A IKA Sbjct: 514 RFRQNLLGKRVDYSGRSVIVVGPDLKLHQCGLPKRMALELFKPFVMQRLVVHGHAHNIKA 573 Query: 397 AKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAA 456 AK++VER + VWD+L+EV + + VLLNRAPTLHRLGIQAFE LIEG AIQLHPLVCAA Sbjct: 574 AKRLVERMDPRVWDVLEEVTQNYLVLLNRAPTLHRLGIQAFEVKLIEGSAIQLHPLVCAA 633 Query: 457 YNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRD 516 +NADFDGDQMAVHVPL+ AQ EAR M+ST N+L P++GEP+I P+ D+VLG Y MT Sbjct: 634 FNADFDGDQMAVHVPLSAAAQREARERMLSTRNLLDPSDGEPVIAPTLDIVLGCYAMTLP 693 Query: 517 CVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGR 576 NA+G G + +E Y+SG L A ++VR+ + L +TTVGR Sbjct: 694 DPNARGAGKIFADRQEVVLAYQSGAVDLQAPIRVRMEIDGQ--------GEQLVETTVGR 745 Query: 577 AILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSG 636 + I+PK L N+ + +KA+ +++ TCY LG + T AD+I GF YA +SG Sbjct: 746 VLFNEILPKEL--GFWNELMDRKALRRLIATCYTRLGAEETARLADRIKDLGFHYATKSG 803 Query: 637 ASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKA 696 ++G+ D+ IP +K EII+ AE VAE++ Q++ GL+T ER+ +V+ IW A D +++ Sbjct: 804 ITIGVTDVHIPAEKAEIIARAEQRVAEVERQYRRGLITDAERHREVVSIWNEARDELAQV 863 Query: 697 MMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIE 756 + +L NS+YMM+ SGA+G+ QI Q+AGMRGLM P G IIE Sbjct: 864 VERSL---------------GEQNSLYMMSKSGAKGNINQISQMAGMRGLMLDPKGQIIE 908 Query: 757 TPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGT 816 PI +NFREGL+VL+YFISTHGARKGLADTAL+TA+SGYLTRRLVDVAQD++VT DDCGT Sbjct: 909 LPIRSNFREGLSVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVAQDVIVTIDDCGT 968 Query: 817 HEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLL---- 872 +G+ + +E +E DR+LGRV A D++ P T +LV RN + E + Sbjct: 969 EDGMWVR--LEDVPDRETFADRILGRVAARDLIDPATGTVLVRRNEEITESIVADIVASL 1026 Query: 873 ----EENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGT 928 + + AV +R+ + C D+GVC CYGR+LA I+ GEA+G+IAAQSIGEPGT Sbjct: 1027 DRSEPAHRITAVMIRTPLYCTADYGVCRLCYGRNLATRQIVELGEAVGIIAAQSIGEPGT 1086 Query: 929 QLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRN--TELKLID 986 QLTMRTFH GG A +V+ + K+V+ +V + +++ Sbjct: 1087 QLTMRTFHTGGVAGEDITTGLPRVEELFEAREPKGKAVLAKIDGVVQVVEDEFGRKVIVE 1146 Query: 987 EFGRTKESYKVPYGAVLAKGDGEQVAGGETVANW-DPHTMPVITEVSGFVRFT---DMID 1042 + E+++VP G VL G G+ V G+ +A + P++ + G V +I Sbjct: 1147 DARLETETHRVPEGFVLLVGTGDMVTAGQVLARPAEGEGEPIVATMDGEVFVDGDELIIR 1206 Query: 1043 GQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLP 1102 + R+ LT + L+V + ER G+ L + N + G D +Y L Sbjct: 1207 REEQRREEYPLTATAHLLVSN-GERVKAGQQLTDGNVSPEELLNTL---GRDAVQRYILD 1262 Query: 1103 GKAIVQLEDGVQ-------ISSGDTLARIPQESGGTKDITGG 1137 V GV I L ++ G D+ G Sbjct: 1263 EVQKVYKSQGVITNDRHIEIIIRQMLRKVAVTDPGDTDLLVG 1304 Score = 240 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 144/495 (29%), Positives = 220/495 (44%), Gaps = 65/495 (13%) Query: 915 IGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLV 974 +G +AA+ + +P T + + ES + + + Sbjct: 990 LGRVAARDLIDPATGTVLV------RRNEEITESIVADIVASLDRSEPAHRIT------A 1037 Query: 975 ITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQV--AGGETVANWDPHTMPVITEVS 1032 + R T L ++G + Y GE V +++ + + T + Sbjct: 1038 VMIR-TPLYCTADYGVCRLCYGRNLATRQIVELGEAVGIIAAQSIGEP-GTQLTMRTFHT 1095 Query: 1033 GFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPG 1092 G V D+ G + E + + K + D G V++ Sbjct: 1096 GGVAGEDITTGLPRVEELFEA--------REPKGKAVLAKIDGVVQVVEDEFGRKVIVED 1147 Query: 1093 TDMPAQ-YFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPK 1151 + + + +P ++ + G +++G LAR + G Sbjct: 1148 ARLETETHRVPEGFVLLVGTGDMVTAGQVLARPAEGEG---------------------- 1185 Query: 1152 EPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVIS 1211 I+A + G V + +I + E + L V GERV+ G ++ Sbjct: 1186 -EPIVATMDGEVFVDGDE------LIIRREEQRREEYPLTATAHLLVSNGERVKAGQQLT 1238 Query: 1212 DGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGS 1271 DG +P ++L G AV RYI++EVQ VY+ QGV ND+HIE+I+RQMLRK + + G Sbjct: 1239 DGNVSPEELLNTLGRDAVQRYILDEVQKVYKSQGVITNDRHIEIIIRQMLRKVAVTDPGD 1298 Query: 1272 SDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRV 1331 +D L GE ++ +++ N E+ A G V AT + LLGITKASLATES++SAASFQETTRV Sbjct: 1299 TDLLVGEMLDRAQLLRINEEVIAQGGVPATAQQVLLGITKASLATESWLSAASFQETTRV 1358 Query: 1332 LTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQVTAEDASA 1391 LTEAA+ GK D LRGLKENVI+G+LIPAG+G+ + R + A Sbjct: 1359 LTEAAIQGKVDYLRGLKENVIIGKLIPAGSGFWERKQRRE-----------AALSALDEA 1407 Query: 1392 SLAELLNAGLGGSDN 1406 +LA L GLG S Sbjct: 1408 TLAGLAAVGLGPSGE 1422 Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 105/234 (44%), Positives = 140/234 (59%), Gaps = 8/234 (3%) Query: 1 MKDL--LKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFC 58 M + + + F+AI+I LASP+ IRSWS+GEV KPETINYRT KPE GLFC Sbjct: 1 MSTVARQRETRKSIDVNHFEAIRIGLASPEAIRSWSYGEVTKPETINYRTLKPEHGGLFC 60 Query: 59 ARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLK 118 RIFGP KD+EC CGKYKR ++ G IC+KCGVEVT++KVRRERMGHIELA+P AHIW++K Sbjct: 61 ERIFGPTKDFECYCGKYKRQRYAGTICDKCGVEVTRSKVRRERMGHIELAAPVAHIWYVK 120 Query: 119 SLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGD---- 174 PSR+GLLLD+ R++ERVLYF SY+V + ++ L+E Sbjct: 121 GTPSRLGLLLDITPRNLERVLYFASYLVTRVDEAKRQELIENIRQELQAELDELDRQLEA 180 Query: 175 EFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKK--LTKRIKLLEA 226 + A+ + L E + RE + +R+ L +R++ Sbjct: 181 KRRELEEAQGTELLALRDRREALEREARERVVSEVERVRRQAAGLRERLQEALG 234 >UniRef50_P35084 DNA-directed RNA polymerase II subunit rpb1 n=10 Tax=cellular organisms RepID=RPB1_DICDI Length = 1727 Score = 858 bits (2215), Expect = 0.0, Method: Composition-based stats. Identities = 285/1573 (18%), Positives = 526/1573 (33%), Gaps = 250/1573 (15%) Query: 7 FLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVK 66 F + + + ++ + SPD IR+ S V+ PET KP+ GL + Sbjct: 5 FPPSSAELRKVKRVQFGILSPDEIRNMSVARVEHPETY--ENGKPKAGGLLDPAMGTI-- 60 Query: 67 DYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGL 126 + C+ C + + GHIELA P HI F+ ++ + Sbjct: 61 -------------DKTQRCQTCSGTMAECP---GHFGHIELAKPVFHIGFIDTVLKILRC 104 Query: 127 LLDMPLRDI--------ERVLYFESYVVIEGGMTNLERQQILT-------EEQYLDALEE 171 + + + + L + + + + + + EE L +E Sbjct: 105 VCYHCSKLLTDTNEHSFRQALKIRNQKHRLNAVVDCCKNKKVCAIGGEEEEEHDLSKTDE 164 Query: 172 FGDEFDAKMGA---------EAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIK 222 D+ G E ++ +++ D+ E + + L+ K++ Sbjct: 165 ELDKPVKHGGCGNVLPKITKEDLKIIVEFKDVTDESIEKKSVLSAERVLNILKRIKDEDS 224 Query: 223 LLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL 282 + +WMI TVLPV PP +RP + +D DL ++ N L+R Sbjct: 225 RAMGINPDWARADWMIATVLPVPPPPVRPSIMMDTSTRGEDDLTHKLADIVKANRELQRQ 284 Query: 283 LDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAI-TGSNKRPLKSLADMIKGKQGRFRQN 341 AP I+ + LQ V +DN G + RPLKS+ +KGK+GR R N Sbjct: 285 EKNGAPAHIIAEATQFLQFHVATYVDNEIPGLPQAQQRSGRPLKSIRQRLKGKEGRIRGN 344 Query: 342 LLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAA---- 397 L+GKRVD+S R+VIT P L + Q G+P+ +AL L P + + I+ Sbjct: 345 LMGKRVDFSARTVITADPNLSIDQVGVPRSIALNLTYPETVTPFNIDKMRELIRNGPSEH 404 Query: 398 --KKMVEREEAVVWD-----------------ILDEVIREHPVLLNRAPTLHRLGIQAFE 438 K + RE+ +D + + V+ NR P+LH++ + Sbjct: 405 PGAKYIIREDGTRFDLRFVKKVSDTHLECGYKVERHINDGDVVIFNRQPSLHKMSMMGHR 464 Query: 439 PVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEP 498 ++ +L+ V + YNADFDGD+M +HVP TLE + E +MM I+SP + P Sbjct: 465 IKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTLETRAEVIEIMMVPRQIVSPQSNRP 524 Query: 499 IIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKD 558 ++ QD +LG T+ + + L G A +K + K Sbjct: 525 VMGIVQDTLLGSRLFTKRDCFMEKD---LVMNILMWLPSWDGKVPPPAILKPKQLWTGKQ 581 Query: 559 ANGELVAKTSLKDTTVGRAI-----------LWMIVPKGLPYSIVNQALGKKAISKMLNT 607 ++ +L T +I L I+ + A +++ Sbjct: 582 LFSLIIPDINLIRFTSTHNDKEPNECSAGDTRVIIERGELLAGILCKRSLGAANGSIIHV 641 Query: 608 CYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHE----IISEAEAEVAE 663 G +F DQ + G ++GI D + IS A+ +V E Sbjct: 642 VMNEHGHDTCRLFIDQTQTVVNHWLINRGFTMGIGDTIADSATMAKVTLTISSAKNQVKE 701 Query: 664 IQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIY 723 + + Q+ + + + + L ++ N++ Sbjct: 702 LIIKAQNKQFECQPG--------KSVIETFEQKVNQVLNKARDTAGSSAQDSLSEDNNLK 753 Query: 724 MMADSGARGSAAQIRQLAGMRGLM--------------------AKPDGSIIETPITANF 763 M +G++GS I Q+ G G + ++ Sbjct: 754 AMVTAGSKGSFINISQMMACVGQQNVEGKRIPFGFQSRTLPHFTKDDYGPESRGFVENSY 813 Query: 764 REGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMT 823 GL ++F G R+GL DTA+KT+ +GY+ RRLV +D+ + D + + Sbjct: 814 LRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDVSIKYDATVRNSLGDVI 873 Query: 824 PVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEE-NSVDAVKV 882 G D + + + + + K T + R+ + + D + ++ V+ Sbjct: 874 QFAYGEDGIDGC---FVENQSIDSLRKDNTELERMYRHQVDKPDYGDGWMDPLVIEHVRN 930 Query: 883 RSVVSCDTDFGVCAHCYGRDLARGHIINKGE---AIGVIAAQSIGEPGTQLTMRTFHIGG 939 S+ + R L R II GE + V + I + + Sbjct: 931 DSLTRDTLEKEFERIKSDRSLLRNEIIPSGEANWPLPVNLRRLINNAQKLFNIDIRRVSD 990 Query: 940 AASRAAAESSIQV---------------KNKGSIKLSNVKSVVNSSGKLVITSRNTELKL 984 ++ + + V +++ S ++ Sbjct: 991 LNPAVVVLEIEKLVARLKIIATADTTEDDENFNRAWAEVYFNATMLFSILVRSTFASKRV 1050 Query: 985 IDEFGRTKESYKVPYGAVL------AKGDGEQV--AGGETVANWDPHTMPVITEVSGFVR 1036 + EF T++++ G + GE V +++ +G Sbjct: 1051 LTEFRLTEKAFLWVCGEIESKFLQALAHPGEMVGALAAQSIGEPATQMTLNTFHYAGVSS 1110 Query: 1037 FTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMP 1096 + + + + + + + R + + + + Sbjct: 1111 KNVTLGVPRLKEIINIAKQVKTPSLTIYLKPHMARDMDRAKIVKSQLEYTTLANVTSATE 1170 Query: 1097 AQYFLPGKAIVQLEDGVQISSGDTL---------------------ARIPQESGGTKDIT 1135 Y + + ED ++S L + + DIT Sbjct: 1171 IYYDPDPQNTIISEDAEFVNSYFELPDEEIDVHSMSPWLLRIELDRGMVTDKKLTMADIT 1230 Query: 1136 GGLPRV--------------------ADLFEARRPKE-------------------PAIL 1156 + R + E++ K +L Sbjct: 1231 QCVVRDFGLSLNCIFSDDNAEKLILRIRMVESQETKGTDNDDDDQFLRRIESNMLSEMVL 1290 Query: 1157 AEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEA 1216 I GI T K +T G EE I +++ E D Sbjct: 1291 RGIKGIKKVFMRTDDKIP-KVTENGGFGVREEWILDTDGVSLLEVMSHPDVDHTRTTSND 1349 Query: 1217 PHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLE 1276 +I+++ G+ AV ++ E++ V G +N +H+ ++ M Sbjct: 1350 IVEIIQVLGIEAVRNALLKELRAVISFDGSYVNYRHLAILADVMT--------------- 1394 Query: 1277 GEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLAT--ESFISAASFQETTRVLTE 1334 Y L+ IT+ + + SF+ET +L + Sbjct: 1395 -------------------------YRGHLMAITRHGINRVETGPLMRCSFEETVEILMD 1429 Query: 1335 AAVAGKRDELRGLKENVIVGRLIPAGTGYAYH---QDRMRRRAAGEAPAAPQVTAEDASA 1391 AA+ + D+++G+ EN+I+G+L P GTG QD ++ + P V+ D Sbjct: 1430 AAMFSETDDVKGVTENIILGQLPPLGTGSFEVFLNQDMIKNAHSIALPEPSNVSYPDTPG 1489 Query: 1392 SLAELLNAGLGGS 1404 S + G G + Sbjct: 1490 SQTPSYSYGDGST 1502 >UniRef50_Q2ST47 DNA-directed RNA polymerase subunit beta' n=5 Tax=Mollicutes RepID=RPOC_MYCCT Length = 1255 Score = 855 bits (2208), Expect = 0.0, Method: Composition-based stats. Identities = 460/1199 (38%), Positives = 674/1199 (56%), Gaps = 112/1199 (9%) Query: 12 TKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECL 71 AIKI LA+PD IRSWS GEV KPETINY+T K E+DGLF RIFGP K+YEC+ Sbjct: 2 ENLNRKKAIKIELANPDTIRSWSHGEVLKPETINYKTLKAEKDGLFDERIFGPTKNYECV 61 Query: 72 CGKYKRLK--HRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLD 129 CG+YK+ ++G CEKCGVE+T++ VRRERMGHIEL P HIW LK P RI +LD Sbjct: 62 CGRYKKANPMNKGKKCEKCGVELTESIVRRERMGHIELEEPVTHIWMLKVAPYRIAAILD 121 Query: 130 MPLRDIERVLYFESYVVIEGGMT-----------------------NLERQQILTEEQYL 166 + +++E V+YF S++V+E G L ++ + Sbjct: 122 LKAKELEEVVYFVSHIVLEQGNQSHFLEKEVLDLGSSRITKTREKLQLSILDVIDQINDP 181 Query: 167 DALE---------------------------EFGDEFDAKMGAEAIQALLKSMDLEQECE 199 + + +GA A++ LL+ +DL +E E Sbjct: 182 EHRDTKKANRLLEELKNTSIPFSIDEATSLISKYTNAKFGIGARAVEYLLEKVDLTKEIE 241 Query: 200 QLREEL-NETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGG 258 ++ +L N + +R KL KR++ ++ +S +PEWM++ V+PV+PPD+RP++ LDGG Sbjct: 242 AIKIQLENSKKTPNERTKLLKRLETFDSLKRSKQRPEWMVMRVIPVIPPDIRPIIQLDGG 301 Query: 259 RFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITG 318 RF TS++NDLYRR+I RN RLK++ ++ AP IIV NEKRMLQEAVDAL DN R+ + + G Sbjct: 302 RFTTSEINDLYRRIIIRNERLKKVKEMGAPSIIVNNEKRMLQEAVDALFDNERKPKPVQG 361 Query: 319 SNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFK 378 NKRPLKSL ++KGKQGRFRQNLLGKRVDYS RSVI +GP L+++Q GLP++MA+ LFK Sbjct: 362 KNKRPLKSLTSVLKGKQGRFRQNLLGKRVDYSARSVIAIGPDLKMYQAGLPREMAITLFK 421 Query: 379 PFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFE 438 PF+ L+ A +K A+KM+ + + VW+ L++VI++ PVLLNRAPTLHRLGIQAFE Sbjct: 422 PFVIQWLQDHEYAENVKIAEKMLLQNDPKVWEALEQVIKDRPVLLNRAPTLHRLGIQAFE 481 Query: 439 PVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEP 498 P L++GKAI+LHPLV A+NADFDGDQMAVHVP+T EA E+RALM+ ++ IL P +G+ Sbjct: 482 PKLVKGKAIRLHPLVTTAFNADFDGDQMAVHVPITKEAVAESRALMLGSSAILGPKDGKA 541 Query: 499 IIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKD 558 I+ P QD++LG YY+T + NAKG+GM+ + EA Y SG L++ + + ++ ++ Sbjct: 542 IVTPGQDIILGNYYLTTEEKNAKGQGMIFSSLDEAFMAYNSGQIHLNSLIGIALSALPEE 601 Query: 559 ANG-ELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALG-------------------- 597 + S TTVG+ I P+ N Sbjct: 602 KFSDKNQRLNSYLLTTVGKLYFNQIFDDNFPWINSNNIWNAKEAVKEFIYDFSQDIDKVI 661 Query: 598 ----------KKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIP 647 KK +S ++ + G + T D++ GF+++ +SG ++ D+V Sbjct: 662 ENVQVQQPIKKKELSLIIERYFETHGARKTAEMLDKMKDLGFSFSTKSGTTISAGDVVAF 721 Query: 648 EKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVI 707 K++ EA+ +V +I + + G++T E+ ++ID+W+ D++ + L+ + Sbjct: 722 THKYDEFKEADQKVEQITDFYNMGMLTNSEKKRRIIDVWSEVKDKIQNELATVLRKDVK- 780 Query: 708 NRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGL 767 N I++M DSGARG+ + QL GMRGLM G I E PI ++FREGL Sbjct: 781 ------------NPIFVMVDSGARGNVSNFTQLVGMRGLMNDTKGDIKEIPIKSSFREGL 828 Query: 768 NVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIE 827 V +YF+STHGARKG+AD ALKTA+SGYLTRRLVDV+Q++VV +DC +G ++ +I+ Sbjct: 829 TVSEYFVSTHGARKGMADIALKTADSGYLTRRLVDVSQEIVVVNEDCEPTKGFEVSAIID 888 Query: 828 G--GDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSV 885 +V PL+DR++GR T ED+ +++ NTL+ + + + + + +V +RSV Sbjct: 889 TKHDNVIVPLKDRLVGRFTFEDIYD-DDKNLVASANTLIDKNIAEKIIMSGISSVIIRSV 947 Query: 886 VSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASR-A 944 ++CD GVC CYG +LA ++N GE +GVIAAQSIGEPGTQLTMR FH GG A Sbjct: 948 LTCDNKRGVCQKCYGLNLATASVVNIGEPVGVIAAQSIGEPGTQLTMRNFHTGGVAGNVD 1007 Query: 945 AAESSIQVKNKGSIKLSNVK-SVVNSSGKLV--ITSRNTELKL-IDEFGRTKESYKVPYG 1000 + ++K + ++++ +V I N + I + YK + Sbjct: 1008 ITQGLPRIKELLDVTTPKGAVAIISEVDGVVSEIEDYNGVFVINIVTENEEVKKYKTEFN 1067 Query: 1001 AVLAKGDGEQVAGGETVAN--WDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSS 1058 +VL G V G+ + D H + + + + Q E++ Sbjct: 1068 SVLRVEQGSSVMAGQKLTEGAIDLHQLLEFGGIQDVQNYILKEVQKVYRLQGIEISDKYI 1127 Query: 1059 LVVLDSAERTAGGK-----DLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDG 1112 +++ DL P I +V+ + L I ++ Sbjct: 1128 EIIIKQMLNKVKITDSGDSDLLPGEIITIQNYKEVVQDCIVKSIRPPLSKAQIFGIKKA 1186 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 113/389 (29%), Positives = 173/389 (44%), Gaps = 12/389 (3%) Query: 985 IDEFGRTKESYKVPYGAVLAKGDGEQVAGG-ETVANWDPHTMPVITEVS----GFVRFTD 1039 + G ++ + + G E A D VI + G F D Sbjct: 851 TADSGYLTRRLVDVSQEIVVVNEDCEPTKGFEVSAIIDTKHDNVIVPLKDRLVGRFTFED 910 Query: 1040 MIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQY 1099 + D T + + +R L + +G G ++ Sbjct: 911 IYDDDK-NLVASANTLIDKNIAEKIIMSGISSVIIRSVLTCDNKRGVCQKCYGLNLATAS 969 Query: 1100 FLPGKAIVQLEDGVQI-SSGDTLARIPQESGGTK---DITGGLPRVADLFEARRPKE-PA 1154 + V + I G L +GG DIT GLPR+ +L + PK A Sbjct: 970 VVNIGEPVGVIAAQSIGEPGTQLTMRNFHTGGVAGNVDITQGLPRIKELLDVTTPKGAVA 1029 Query: 1155 ILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGP 1214 I++E+ G+VS ++ G + I + + + L V +G V G +++G Sbjct: 1030 IISEVDGVVSEIEDYNGVFVINIV-TENEEVKKYKTEFNSVLRVEQGSSVMAGQKLTEGA 1088 Query: 1215 EAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDF 1274 H +L G+ V YI+ EVQ VYRLQG++I+DK+IE+I++QML K I ++G SD Sbjct: 1089 IDLHQLLEFGGIQDVQNYILKEVQKVYRLQGIEISDKYIEIIIKQMLNKVKITDSGDSDL 1148 Query: 1275 LEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTE 1334 L GE + K ++ + GI KA L + S++S+ASFQ+T RVLT Sbjct: 1149 LPGEIITIQNYKEVVQDCIVKSIRPPLSKAQIFGIKKAPLESSSWLSSASFQDTARVLTR 1208 Query: 1335 AAVAGKRDELRGLKENVIVGRLIPAGTGY 1363 A + GK D+L GLKEN+++G LIPAGTG Sbjct: 1209 AIIKGKEDKLEGLKENIMLGNLIPAGTGL 1237 >UniRef50_A5USR6 DNA-directed RNA polymerase subunit beta' n=5 Tax=Chloroflexaceae RepID=RPOC_ROSS1 Length = 1504 Score = 854 bits (2206), Expect = 0.0, Method: Composition-based stats. Identities = 481/1162 (41%), Positives = 674/1162 (58%), Gaps = 91/1162 (7%) Query: 142 ESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALL-KSMDLEQECEQ 200 + +++ ++IL+E++Y E F A MGA A++ ++ +++DL++ E+ Sbjct: 308 REEKERLEQIDSIKLKRILSEQEYRALREIAPGVFRADMGAGAVRDMIVRTIDLDKLAEE 367 Query: 201 LREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRF 260 L+ E+ T +RKK TKR++++EAF +SGN+PEWMILTVLPV+PPDLRP+V LDGGRF Sbjct: 368 LQNEVYTTQG-QRRKKATKRLRVVEAFRKSGNRPEWMILTVLPVIPPDLRPMVQLDGGRF 426 Query: 261 ATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSN 320 ATSDLNDLYRRVINRNNRLKRL++L AP+IIVRNEKRMLQEAVDAL+DNGRRGRA++G Sbjct: 427 ATSDLNDLYRRVINRNNRLKRLMELNAPEIIVRNEKRMLQEAVDALIDNGRRGRAVSGKG 486 Query: 321 KRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPF 380 K LKSL+DM+KGKQGRFRQNLLGKRVDYSGRSVI VGP L+LHQCGLPKKMALELFKPF Sbjct: 487 KHRLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPDLKLHQCGLPKKMALELFKPF 546 Query: 381 IYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPV 440 + +L +G A IK+AK++VER VWD+L+EVI+++ VLLNRAP+LHRL IQAFE Sbjct: 547 VMRRLVEKGFAHNIKSAKRIVERVRPEVWDVLEEVIKDYLVLLNRAPSLHRLSIQAFEAK 606 Query: 441 LIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPII 500 LIEG AIQLHPLVCAA+NADFDGDQMAVHVPL+ +AQ EAR M+S N+LSPA G+PII Sbjct: 607 LIEGSAIQLHPLVCAAFNADFDGDQMAVHVPLSRKAQEEARMRMLSKYNLLSPATGDPII 666 Query: 501 VPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDAN 560 PSQD+VLG YY+T AKG G + EA Y GL + A + VR+T + Sbjct: 667 TPSQDIVLGCYYLTMVKDGAKGSGKMFASIDEALLAYDKGLIDIQAPIFVRMTGTVYGES 726 Query: 561 GELVAKTS---------LKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRI 611 V S L +TT+GR I + + L N+ + KK + +++ CY+ Sbjct: 727 DRPVRMLSPDENGAPRMLLETTIGRIIFNNELLEPLR--FRNRLIAKKGLREIIADCYKY 784 Query: 612 L------------------------------GLKPTVIFADQIMYTGFAYAARSGASVGI 641 G + T AD+I GF YA R G ++G+ Sbjct: 785 YTNLNNLTEADLDTIRAMYGDRPRDDLARYFGSEMTASQADRIKTLGFRYATRGGMTIGV 844 Query: 642 DDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNL 701 DD+ IP KK +I++EAE V E++ QF+ GL+T ERY ++++IW A + ++A+ +L Sbjct: 845 DDIEIPPKKQDILAEAEKRVTEVERQFRRGLITEEERYREIVEIWQNATKQTTEAVKQHL 904 Query: 702 QTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITA 761 F + MM +S ARG+ Q+ Q+AGMRGLM+ P G IIE PI + Sbjct: 905 N---------------PFGPVAMMVNSAARGNINQLSQMAGMRGLMSDPTGRIIELPIKS 949 Query: 762 NFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIM 821 NFREGL+VL+YF+STHG RKGLADTAL+TA++GYLTRRL+DVAQD +VT DDCGT EG+ Sbjct: 950 NFREGLSVLEYFVSTHGGRKGLADTALRTADAGYLTRRLIDVAQDNIVTIDDCGTDEGLW 1009 Query: 822 MTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVK 881 + + +V + R+LGR+ A ++ P T +IL RN + E +E ++DAV Sbjct: 1010 IYR-ADDREVLQDFEQRILGRLLAAPLVDPRTGEILANRNDEIDEALVRKCKELAIDAVY 1068 Query: 882 VRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAA 941 VRS ++C D+G+C CYGR+LA G +++ GEA+G+IAAQSIGEPGTQLT+RTFH GG A Sbjct: 1069 VRSPLACKADYGICRMCYGRNLATGKLVDIGEAVGIIAAQSIGEPGTQLTLRTFHTGGVA 1128 Query: 942 S-RAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTK--ESYKVP 998 S + +V+ + K+++ +V R E++ I + +++P Sbjct: 1129 SADDITQGLPRVQEIFEARTPKGKAILAEIDGIVELVREDEVRKIRVVATELYTDDHELP 1188 Query: 999 YGAVLAKGDGEQVAGGETVANW---DPHTMPVITEVSGFVR-----FTDMIDGQTITRQT 1050 DG QV G+ +A D + P++ ++G VR + + + + + Sbjct: 1189 PHYEPVVADGAQVNEGDVLAQSNRADLNGEPIVARIAGVVRIGAGQISVINEEREVREVV 1248 Query: 1051 DELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLE 1110 T + + ++ R G+ L + + G + +Y + V Sbjct: 1249 APHTARLAPGI-ENGARVVAGQHLTEG---SADPQELLALQGREAVQRYLVNEAQKVYRS 1304 Query: 1111 DGVQISSGDT-------LARIPQESGGTKDITGGLPRVADLFEARRP--KEPAILAEISG 1161 GV I+ L R+ E G D G +L ++ K I+++ Sbjct: 1305 QGVDINDKHIEVIVRQMLRRVRIEEPGDTDYLPG-----ELIDSTEFVRKNAEIISQGGE 1359 Query: 1162 IVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDIL 1221 + G + +T +V+ + + I Sbjct: 1360 PATASTMLLGITKASLTTDSFLAAASFQETTRVLTEAAITGKVDYLRGLKENVVIGKLIP 1419 Query: 1222 RLRGVHAVTRY---IVNEVQDV 1240 G+ + I+ E+ +V Sbjct: 1420 AGTGIEKRRQLAEEIIGELANV 1441 Score = 242 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 128/398 (32%), Positives = 182/398 (45%), Gaps = 36/398 (9%) Query: 1000 GAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSL 1059 G ++ G+ + +++ G D+ G ++ E Sbjct: 1093 GKLVDIGEAVGIIAAQSIGEPGTQLTLRTFHTGGVASADDITQGLPRVQEIFEARTPKGK 1152 Query: 1060 VVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGD 1119 +L + L D ++ + LP + DG Q++ GD Sbjct: 1153 AILAEIDGIVE-------LVREDEVRKIRVVATELYTDDHELPPHYEPVVADGAQVNEGD 1205 Query: 1120 TLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITP 1179 LA+ D+ G I+A I+G+V G + Sbjct: 1206 VLAQ-----SNRADLNG----------------EPIVARIAGVVRIGAGQ------ISVI 1238 Query: 1180 VDGSDPYEEMIPKWRQL--NVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEV 1237 + + E + P +L + G RV G +++G P ++L L+G AV RY+VNE Sbjct: 1239 NEEREVREVVAPHTARLAPGIENGARVVAGQHLTEGSADPQELLALQGREAVQRYLVNEA 1298 Query: 1238 QDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGK 1297 Q VYR QGV INDKHIEVIVRQMLR+ I G +D+L GE ++ + N E+ + G Sbjct: 1299 QKVYRSQGVDINDKHIEVIVRQMLRRVRIEEPGDTDYLPGELIDSTEFVRKNAEIISQGG 1358 Query: 1298 VGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLI 1357 AT S LLGITKASL T+SF++AASFQETTRVLTEAA+ GK D LRGLKENV++G+LI Sbjct: 1359 EPATASTMLLGITKASLTTDSFLAAASFQETTRVLTEAAITGKVDYLRGLKENVVIGKLI 1418 Query: 1358 PAGTGYAYHQDRMRRRAAGEAPAAPQVTAEDASASLAE 1395 PAGTG + A AP + + Sbjct: 1419 PAGTGIEKRRQLAEEIIGELANVAPATSTAVVEQERPD 1456 Score = 193 bits (490), Expect = 4e-47, Method: Composition-based stats. Identities = 102/210 (48%), Positives = 140/210 (66%), Gaps = 5/210 (2%) Query: 13 KTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLC 72 + +F AI+I+LASP+ I SWS GEV KPETINYRT KPERDGLFC RIFGP KD+EC C Sbjct: 3 EINDFSAIRISLASPEDILSWSHGEVTKPETINYRTLKPERDGLFCERIFGPTKDWECYC 62 Query: 73 GKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPL 132 GKYKR++++GV+C+KCGVEVT++KVRRERMGHI LASP +HIWF+K PSR+GLLLD+ Sbjct: 63 GKYKRVRYKGVVCDKCGVEVTRSKVRRERMGHISLASPVSHIWFVKGTPSRLGLLLDISP 122 Query: 133 RDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSM 192 R++ERVLYF SY+++ + + + +Y + E E ++K L + Sbjct: 123 RNLERVLYFASYMIVHVDEELKAQAREALQAEYREKRERIQQEAESKQI-----ELSTQL 177 Query: 193 DLEQECEQLREELNETNSETKRKKLTKRIK 222 + + + + E + ++L I Sbjct: 178 TQDLGGMESAQITTQRRIEEEYRRLRDEIS 207 >UniRef50_B6K857 DNA-directed RNA polymerase n=9 Tax=Eukaryota RepID=B6K857_SCHJY Length = 1406 Score = 846 bits (2186), Expect = 0.0, Method: Composition-based stats. Identities = 277/1553 (17%), Positives = 503/1553 (32%), Gaps = 321/1553 (20%) Query: 5 LKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGP 64 +K + ++ L+ P + EV + KP G R+ Sbjct: 1 MKEPVDDQVPKRIRHLQFCLSGPKEFVKDAVVEVSTRDLYTMTERKPVEHGALDRRMGTT 60 Query: 65 VKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRI 124 R +C CG V GH+ LA P +I + K+ + + Sbjct: 61 ---------------DRNAVCATCGEGVADCI---GHFGHVRLALPVFNIGYFKTTLTIL 102 Query: 125 GLLLDMPLRDIERVLYFESYVV--IEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMG- 181 + + ++++ + G+ NL R QI + G Sbjct: 103 QNICKDCATVLVSQREKQNFLKELRKPGIDNLRRTQICKRLNDACKKVRVCPYCNKTQGV 162 Query: 182 ----------------------------AEAIQALLKSMDLEQECEQLREELNETNSETK 213 QAL DL + ++LN Sbjct: 163 VKKAGPLKIIHERFRFNRKMQEEGGEFRQSFDQALKAMPDLRPHLHKAHDDLNPLRVLNL 222 Query: 214 RKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVI 273 K++T L +PE ++ +P P +RP V +G D+ ++ Sbjct: 223 FKQITPMDCELLGMDPEKGRPENLLWQYMPAPPVTIRPTVAQEGATT-EDDITIKLTEIV 281 Query: 274 NRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKG 333 ++ ++ L+ P + + LQ +V +++ G +P + +KG Sbjct: 282 WTSSLIRAALNKGTPINSLMEQWEFLQLSVALYINSELPGLRPPDMPSKPTRGFCQRLKG 341 Query: 334 KQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATT 393 KQGRFR NL GKRVD+SGR+VI+ P L++ Q +P ++A L P + L T Sbjct: 342 KQGRFRGNLSGKRVDFSGRTVISPDPNLQIDQVAVPLRIAKILTYPEKVTDQNIDALRTR 401 Query: 394 IKAAKKMVEREEAVVWD-------------------------ILDEVIREHPVLLNRAPT 428 + + VV + + VL NR P+ Sbjct: 402 VTNGPDVHPGANYVVDRDTGIKRFLRFGNRKRIAEELHVGDTVERHLQDNDVVLFNRQPS 461 Query: 429 LHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTN 488 LH+L I A + + ++ + VC YNADFDGD+M +HVP T EA+ EA LM N Sbjct: 462 LHKLSIMAHLVKVRPWRTLRFNECVCGPYNADFDGDEMNLHVPQTEEARTEALELMGIKN 521 Query: 489 NILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARV 548 N+++P NGEPII +QD + Y ++ + A + Sbjct: 522 NLVTPRNGEPIIAATQDFITASYLLSLKDCFLDRKTFCNLC-CFMVDASVHIDIPPPAIL 580 Query: 549 KVRITEYEKDANGEL-------------------VAKTSLKDTTVGRAILW-MIVPKGLP 588 K R K G L +AK + + +I L Sbjct: 581 KPRCLWTGKQLFGVLMRPNHLSPVMVNLAANTRSIAKGKCSPPEMCPNDGYLLIQNSELL 640 Query: 589 YSIVNQALGKKAIS-KMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMV-- 645 +V++++ + R G +++ Y G S+GI+D+ Sbjct: 641 AGVVDKSIVGDGKKNSLFYVILRDYGPIEAAATMNRLAKLCARYLGNRGFSIGINDVQPG 700 Query: 646 --IPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQT 703 + K ++ +A + ++ Q+ G + N+ + + + +SK D Sbjct: 701 QRLYHTKEALVEKAYSVSDDLIMQYAKGTLECQPGMNQEATLESKISSTLSKVRDD---- 756 Query: 704 ETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSI--------- 754 + ++ S N+ +MA G++GS + Q+ G + Sbjct: 757 ----VGETCMKELGSRNAPLIMATCGSKGSKINVSQMVACVGQQIISGKRVPDGFQDRSL 812 Query: 755 -----------IETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDV 803 + ++ +F GL ++ R+GL DTA+KTA +GY++RRL+ Sbjct: 813 PHFRKNSKHPLAKGFVSNSFYTGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKS 872 Query: 804 AQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVL-------------- 849 +DL D + G D +P G A + Sbjct: 873 LEDLTSAYDGTVRSSNSSIVQFTYGDDGLDPTYLEGDGTPVAFERCWSHSSNITYNEDDS 932 Query: 850 ---------------------KPGTADILVPRNTLLHEQWCDLLEENSVDAV-------- 880 T + + T + E+ L + + Sbjct: 933 GLLPYKIIEETESILSSRKFTANCTENFIESVRTFVIERLAKKLAQVRANRQLAPKLERP 992 Query: 881 --------------------KVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAA 920 V +V+ + + + G A+G + A Sbjct: 993 SEDDFDDFENDDFAPLAARKSVDNVLRVSKKQLYTFLQFCWEKYMKAKVEPGTAVGAVGA 1052 Query: 921 QSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNT 980 SIGEPGTQ+T++TFH G A++ + + +K ++N++ + Sbjct: 1053 HSIGEPGTQMTLKTFHFAGVAAQTT------------LGVPRIKEIINAAKTISTPIIYG 1100 Query: 981 ELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDM 1040 L + S +V G + E+ + +++ + P T +S V F Sbjct: 1101 ALV----NDQDVRSARVVKGRI------EKTYLKDVISSLEEIFGPTNTYISVHVNF--- 1147 Query: 1041 IDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYF 1100 TI + +LT + + K + + N++ + T Sbjct: 1148 ---DTIRKLQLDLTL---ADIASAIWTAPKLKIPMQQVTVH-DSANEIRVHVTPDTK--- 1197 Query: 1101 LPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEIS 1160 +S + + G+P+ + AI+ + Sbjct: 1198 ------------DFENSSVYYRLQTYKRALPNVVVSGIPKTSR----------AIILQEG 1235 Query: 1161 GIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDI 1220 E G R ++ T ++ Sbjct: 1236 EKKQLVVEGYGLREVMNTEGIVGSK--------------------------TFTNHVMEM 1269 Query: 1221 LRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQV 1280 + G+ A + I+ E+ R G+ ++ +HI ++ M K + Sbjct: 1270 NAVLGIEAARQSIIYEIDSTMRNHGLTVDPRHIMLLGDVMTCKGEV-------------- 1315 Query: 1281 EYSRVKIANRELEANGKVGATYSRDLLGITKASLA--TESFISAASFQETTRVLTEAAVA 1338 LGIT+ +A +S +S ASF++TT L +AA Sbjct: 1316 --------------------------LGITRFGVAKMKDSVLSLASFEKTTDHLFDAAAR 1349 Query: 1339 GKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQVTAEDASA 1391 +D + G+ E +++G+L P GT ++ R P+ D Sbjct: 1350 FAKDSIEGISECIVLGKLAPIGTNVF----QLIRTTEESHDQEPKKLLFDNPT 1398 >UniRef50_B8C4M1 DNA-directed RNA polymerase n=1 Tax=Thalassiosira pseudonana RepID=B8C4M1_THAPS Length = 1422 Score = 844 bits (2181), Expect = 0.0, Method: Composition-based stats. Identities = 292/1525 (19%), Positives = 510/1525 (33%), Gaps = 299/1525 (19%) Query: 7 FLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVK 66 +A ++ ++ L SP ++ + +V + P R+G+ R+ Sbjct: 28 LPEANPTPKQISHLQFGLLSPSDMQRLAEFQVTSRDLFTMPQRLPARNGVLDPRLG---- 83 Query: 67 DYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGL 126 + + C C +++ G+I LA P HI +LK Sbjct: 84 -----------VSDKVSTCATCKLKLADC---AGHFGYIRLALPVFHIGYLKHTL----N 125 Query: 127 LLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGA---- 182 LL + RVL ++ + R +L + + + + Sbjct: 126 LLQCICKSCSRVLLTDAERKMLLKKMRNPRTDVLGKASVFKKVLDKCKKAHQCPYCHKPN 185 Query: 183 ------------EAIQALLKSMDLEQECEQLR---------------------EELNETN 209 + I K +E E E L E+L T Sbjct: 186 GTVKKVHGAPTLKIIHERYKGRHMEDEVEDLLQSLQGAMITNLEINHALRVAVEDLLPTR 245 Query: 210 SETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLD-GGRFATSDLNDL 268 K +T + +PE +IL + V P +RP V +D GG DL Sbjct: 246 VLELFKGMTDDDCEVLWVAPWIGRPENLILEHILVPPVPIRPSVAMDVGGGSNEDDLTVK 305 Query: 269 YRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLA 328 VIN N L+ + + +LQ V ++ G +P++ L Sbjct: 306 LLEVINVNVALELNMTRNPQTKTIMEGWDVLQSQVAQYINGDMPGL-KKEMGHKPIRGLC 364 Query: 329 DMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELR 388 +KGKQGRFR NL GKRVD+S R+VI+ P LR+ Q G+P +A + P + + Sbjct: 365 QRLKGKQGRFRGNLSGKRVDFSARTVISPDPNLRVDQVGVPVHVAKIMTYPETVSRYNIE 424 Query: 389 GLATTIKAAKKMVEREEAV-------------------------VWD-ILDEVIREHPVL 422 L + + + + D + + VL Sbjct: 425 KLRQRVLNGPDVHPGANLIRPGGENSFVKSLAYADRERAAQTLRIGDIVERHMEDGDVVL 484 Query: 423 LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARA 482 NR P+LH+L I + + ++ + + + VCA YNADFDGD+M +H+P T EA++EA Sbjct: 485 FNRQPSLHKLSIMSHQVKVMPWRTFRFNICVCAPYNADFDGDEMNMHLPQTEEARIEANM 544 Query: 483 LMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLA 542 LM +N+ +P NGEP++ SQD + Y +T+ E M + Sbjct: 545 LMGVHHNLATPRNGEPLVACSQDFLSAAYLITQRDQFFSRE-MFCSLVSYFGLAEEQIDV 603 Query: 543 SLHARVKVRITEYEKD--------------------ANGELVAKTSLKDTTVGRAILWMI 582 L A +K K LK + Sbjct: 604 PLPAILKPVPLWTGKQVFTCIVKPNKQTTALVNFEMKEKNYDTNKKLKHFCPNDGWVAFR 663 Query: 583 VPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYA-ARSGASVGI 641 + + +I + +G + + +L R G F D+ Y G S+GI Sbjct: 664 NSELISGNIAKKTIGDGSKTGLLYVLLRDCGSAEAARFMDRFSKLCSRYFGMHRGFSIGI 723 Query: 642 DDM----VIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAM 697 D+ + + K++I+S + E +++ G + + + + + + Sbjct: 724 SDVSPSAKLKKMKYDILSTGYKKAEEAIKKYDEGTLELRPGCDLLQS--------LEEIL 775 Query: 698 MDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSI--- 754 L + N+ +MA+ G++GS I Q+ G A I Sbjct: 776 NGILGKLREAAGQEAMKALPWSNTPRIMAECGSKGSPLNISQMMACVGQQAVGGMRIQDG 835 Query: 755 -----------------IETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLT 797 + + +F GL ++ T G R+GL DTA+KTA +GY+ Sbjct: 836 FVNRTLPHFTYHSLTPPAKGFVANSFYSGLTATEFIFHTMGGREGLVDTAVKTAETGYMA 895 Query: 798 RRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADIL 857 RRL+ +DL + D+ + + G D P + R D L + I Sbjct: 896 RRLMKALEDLSLRYDNSVRNSENTVVQFTYGDDSLNPEKMENNDRPVEFDRLHLHISQIF 955 Query: 858 VPRNT---------------LLHEQWCDLLEENSVDAVKVRSVV------------SCDT 890 + + E++ LL + ++ S +C Sbjct: 956 PCVDEPNLLKEQLQEKIEHCISEERFQCLLPKGKKFLAEIISFFEGIVELQDTIIGTCTN 1015 Query: 891 DFGVCAHCYGR----------------DLARGHIINKGEAIGVIAAQSIGEPGTQLTMRT 934 + + ++ GEA+G I AQSI EPGTQ+T++T Sbjct: 1016 VEHIKQRIWNSCRFTETQVNEFLKTALSKYTKAMVEPGEAVGAIGAQSISEPGTQMTLKT 1075 Query: 935 FHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKES 994 FH G +S + +K ++N+S + +L K Sbjct: 1076 FHFAGVSSMNVTLGVPR-----------LKEIINASKNISTPIITAKLV----QDDNKVG 1120 Query: 995 YKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELT 1054 ++ + T+ + V + SG + ++D I + + Sbjct: 1121 ARIVKAGI----------EKTTLGEISIYVKEVYS--SGDCYLSILLDMDAIRQLRLNID 1168 Query: 1055 GLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQ 1114 +S + R RP + + ++ G+ + F+P K Sbjct: 1169 AVSVRRCILKGVR----GQTRPPILRSLTDKHVLVKKGSKSKLRVFVPDKG--------- 1215 Query: 1115 ISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRR 1174 + + + I G+ V R Sbjct: 1216 -ETPTYFLMQALKVALPRVIVQGISTVN------------------------------RA 1244 Query: 1175 LVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIV 1234 ++ G ++ + L G G + ++ + GV A I Sbjct: 1245 VINEENKGGKTQYHLLVEGYGLAEVMGSPGVDGRHTTT--NHIIEVEQTLGVEAARTSIS 1302 Query: 1235 NEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEA 1294 +E+ + G+ I+ +H+ ++ M K + Sbjct: 1303 SEISYIMNAYGIGIDSRHLLLLSDVMTFKGEV---------------------------- 1334 Query: 1295 NGKVGATYSRDLLGITKASLAT--ESFISAASFQETTRVLTEAAVAGKRDELRGLKENVI 1352 LGIT+ +A ES + ASF++TT L +AAV G+ D + G+ E +I Sbjct: 1335 ------------LGITRFGVAKMRESVLMLASFEKTTDHLLDAAVHGRTDAIDGVSECII 1382 Query: 1353 VGRLIPAGTGYAYHQDRMRRRAAGE 1377 +G IP GTG R R + E Sbjct: 1383 MGIPIPIGTGLFKLLKRATRASKPE 1407 >UniRef50_B7Z6H4 DNA-directed RNA polymerase n=21 Tax=Coelomata RepID=B7Z6H4_HUMAN Length = 1369 Score = 837 bits (2162), Expect = 0.0, Method: Composition-based stats. Identities = 264/1479 (17%), Positives = 493/1479 (33%), Gaps = 241/1479 (16%) Query: 4 LLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFK-PERDGLFCARIF 62 + + + ++ I + SP+ +R + +V + P G+ R+ Sbjct: 2 VKEQFRETDVAKKISHICFGMKSPEEMRQQAHIQVVSKNLYSQDNQHAPLLYGVLDHRMG 61 Query: 63 GPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPS 122 KD CE CG + G+I+L P H+ + +++ Sbjct: 62 TSEKDRP---------------CETCGKNLADC---LGHYGYIDLELPCFHVGYFRAVIG 103 Query: 123 RIGLLLDMPLRDIERVLYFESYV--VIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKM 180 + ++ + + ++ + G+T L+++ + + + A Sbjct: 104 ILQMICKTCCHIMLSQEEKKQFLDYLKRPGLTYLQKRGLKKKISDKCRKKNICHHCGAFN 163 Query: 181 G--------------------------AEAIQALLKSMDLEQECEQL----REELNETNS 210 G + +Q+ +++ +E E L +E LN Sbjct: 164 GTVKKCGLLKIIHEKYKTNKKVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQENLNPLVV 223 Query: 211 ETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGR-FATSDLNDLY 269 K++ L KP +ILT L V P +RP V D DL Sbjct: 224 LNLFKRIPAEDVPLLLMNPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKL 283 Query: 270 RRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLAD 329 +I N+ +K+ A ++ + LQ +++ G + + K+ + Sbjct: 284 TEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQ 343 Query: 330 MIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRG 389 +KGKQGRFR NL GKRVD+SGR+VI+ P LR+ + +P +A L P K + Sbjct: 344 RLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINF 403 Query: 390 LATTI------KAAKKMVEREEAVVWD-------------------ILDEVIREHPVLLN 424 L + +++ + + +I VL N Sbjct: 404 LRKLVQNGPEVHPGANFIQQRHTQMKRFLKYGNREKMAQELKYGDIVERHLIDGDVVLFN 463 Query: 425 RAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 484 R P+LH+L I A + + + + VC YNADFDGD+M +H+P T EA+ EA LM Sbjct: 464 RQPSLHKLSIMAHLARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLM 523 Query: 485 MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL 544 + N+++P NGEP+I QD + G Y +T L Sbjct: 524 GTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRL 583 Query: 545 HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYS-------------- 590 I + G+ + L+ + + Sbjct: 584 P---PPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKGEDLCANDSYVTI 640 Query: 591 ----IVNQALGKKAISK-----MLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGI 641 +++ ++ K + + R G ++ Y + G S+GI Sbjct: 641 QNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGI 700 Query: 642 DDMV----IPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAM 697 D+ + + K+E+++ + E E +G + A + + + Sbjct: 701 GDVTPGQGLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGC--------TAEETLEALI 752 Query: 698 MDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMA-----KPDG 752 + L + NS MA G++GS I Q+ G A PDG Sbjct: 753 LKELSVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDG 812 Query: 753 SI---------------IETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLT 797 + + +F GL ++F T R+GL DTA+KTA +GY+ Sbjct: 813 FENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQ 872 Query: 798 RRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADIL 857 RRLV +DL D + I GGD +P + + Sbjct: 873 RRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIKAVF 932 Query: 858 VPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGV 917 + + +L S+ ++F C + +++ + Sbjct: 933 PCPSEPALSKNELILTTESIMK---------KSEFLCCQDSFLQEIKK-----------F 972 Query: 918 IAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITS 977 I S + +T G E + + + K + T Sbjct: 973 IKGVS------EKIKKTRDKYGINDNGTTEPRVLYQLD--------RITPTQVEKFLETC 1018 Query: 978 RNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRF 1037 R+ ++ E G + L E + + P+IT + Sbjct: 1019 RDKYMRAQMEPGSAVGALCTQMNITLGVP-----RIKEIINASKAISTPIIT---AQLDK 1070 Query: 1038 TDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPA 1097 D D + + E T L + + E D +K+ + + + Sbjct: 1071 DDDADYARLVKGRIEKTLLGE--ISEYIEEVFLPDDCFILVKLSLERIRLLRLEVNAETV 1128 Query: 1098 QYFLPGKAIVQLEDGVQISSGD-TLARIPQESGGTKDITGGLPRVADLFEARRPKEPAIL 1156 +Y + + ++++ G G+ + P+E+ + + V + PK Sbjct: 1129 RYSICT-SKLRVKPGDVAVHGEAVVCVTPRENSKSS-----MYYVLQFLKEDLPK----- 1177 Query: 1157 AEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEA 1216 V + R ++ +++ + L +G + Sbjct: 1178 ------VVVQGIPEVSRAVIHIDEQSGKEKYKLLVEGDNLRAVMATHGVKGTRTT--SNN 1229 Query: 1217 PHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLE 1276 +++ + G+ A I+NE+Q G+ I+ +H+ ++ M Sbjct: 1230 TYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMT--------------- 1274 Query: 1277 GEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLAT--ESFISAASFQETTRVLTE 1334 Y ++LGIT+ LA ES + ASF++T L + Sbjct: 1275 -------------------------YKGEVLGITRFGLAKMKESVLMLASFEKTADHLFD 1309 Query: 1335 AAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRR 1373 AA G++D + G+ E +I+G + GTG + R Sbjct: 1310 AAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKADRD 1348 >UniRef50_D1Y777 DNA-directed RNA polymerase n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y777_9BACT Length = 1710 Score = 836 bits (2160), Expect = 0.0, Method: Composition-based stats. Identities = 429/1095 (39%), Positives = 635/1095 (57%), Gaps = 51/1095 (4%) Query: 106 ELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQY 165 ++ S + H F + P R L+ V+ Y+VI+ G + I+ E + Sbjct: 298 QILSQSEHTLFQEKYPHRFTSQLESV------VVEDPCYLVIDEGESPFSESDIIIEREQ 351 Query: 166 LDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLE 225 + +F A +GAE ++ L +M+L ++LREEL+ET KR+K+ KR++++E Sbjct: 352 Y-LCSAYDPKFKAGIGAEGVREKLCAMNLNHLVQELREELSETTG-QKRRKIVKRLQVVE 409 Query: 226 AFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDL 285 F + P+ M+L VLPV+PPDLRP+V LDGGRFATSDLNDLYRRVINRNNRL +L +L Sbjct: 410 DFRKGDCAPQSMVLEVLPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLSKLKEL 469 Query: 286 AAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGK 345 AP+II+RNEKRMLQE+VDAL+DNGR G+A+ G+ RPLKSL D+++GK+GRFRQNLLGK Sbjct: 470 KAPEIIIRNEKRMLQESVDALIDNGRMGKAVLGAGNRPLKSLTDLLRGKKGRFRQNLLGK 529 Query: 346 RVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREE 405 RVDYSGRSVI +GP+LRL+QCGLPK+MALELFKPF+ K+ +G+AT +K K+M+ER Sbjct: 530 RVDYSGRSVIAIGPFLRLYQCGLPKQMALELFKPFVIQKMVEKGIATNVKNGKRMIERGN 589 Query: 406 AVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQ 465 +W IL+E+I++HPV+LNRAPTLHRLGIQAFEP+L+EGKAI+LHP+ C A+NADFDGDQ Sbjct: 590 EEIWGILEEIIKDHPVMLNRAPTLHRLGIQAFEPILMEGKAIRLHPMACTAFNADFDGDQ 649 Query: 466 MAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGM 525 MAVHVPL++EAQ EAR LM++ NN+LSPA+G+PI+ P+QD++LG+YY+T KGE Sbjct: 650 MAVHVPLSIEAQTEARMLMLAANNLLSPASGKPIVSPTQDILLGVYYITNMVSGLKGENT 709 Query: 526 VLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKT--------SLKDTTVGRA 577 + G ++ R+ +R K + + + T+ GRA Sbjct: 710 YYDSLDDVMTALDHGAVHVNTRIYLRWDPEWKPLTKKGMEDSDFLDPKTRKWLITSPGRA 769 Query: 578 ILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGA 637 + + + L VN +GKK +S ML+ Y L V D I G+ +A SG Sbjct: 770 LFNLHLNPRLR--FVNFQMGKKDLSAMLDKAYDYLSHIEMVDTLDSIKNLGYHWACLSGL 827 Query: 638 SVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAM 697 S + +VIP +K ++++E+ I++Q++ G++T E + ++W+ A ++ ++ Sbjct: 828 SFQMQAIVIPPEKQQLVNESLDVDGRIRDQYEMGILTEDEYLRQKEELWSGAAGKIGDSI 887 Query: 698 MDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIET 757 MD++ N I MM +SGARGS Q+ Q+AG+RGLMA P G II+ Sbjct: 888 MDHMAVT---------------NPIRMMVESGARGSRGQLAQMAGIRGLMADPTGRIIDY 932 Query: 758 PITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTH 817 PIT NFREG+N+L+YFISTHGARKGLADTAL+TA SGYLTRRLVDVAQD++V E+DC T Sbjct: 933 PITTNFREGMNMLEYFISTHGARKGLADTALRTAKSGYLTRRLVDVAQDIIVLEEDCHTS 992 Query: 818 EGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSV 877 +GI + P+ G V PL +R+ GR + ED+ P + + +V +N L+ + EN Sbjct: 993 KGIKIEPMKSDGKVVIPLSERIAGRTSLEDIDHPVSGERIVSKNELISPDKAVEI-ENIR 1051 Query: 878 DAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHI 937 + + VRS +SC++ +G+C CYG DL+ ++N GEA+GV+AAQSIGEPGTQLTMRTFH Sbjct: 1052 EHIWVRSPLSCESPYGICRKCYGVDLSSRKMVNIGEAVGVVAAQSIGEPGTQLTMRTFHT 1111 Query: 938 GG--AASRAAAESSIQVKNKGSIKLSN----VKSVVNSSGKLVITSRNTELKLIDEFGRT 991 GG + + +++ + + + ++ ++ + + Sbjct: 1112 GGVRISGEDITQGLPRIEQLFEARRPKKVSYLAGLNGKVAEVRELEGKRKVIIEGTPNDS 1171 Query: 992 ----KESYKVPYGAVLAKGDGEQVAGGETVAN--WDPHTMPVITEVSGFVRFTDMIDGQT 1045 K +Y +P + +G++V + + DP + + ++ + Sbjct: 1172 DVVQKVTYSIPASQSILVEEGDEVKSDTLITDGYIDPQQLLEVEGQEAVQKYLVDSIQEV 1231 Query: 1046 ITRQTDELTGLSSLVVLDSAERTAGGKDLRPA----LKIVDAQGNDVLIPGTDMPAQYFL 1101 Q + V+L + + + +DV ++ A+ Sbjct: 1232 YRSQGVSINNKHIEVILRKVAPINRLRVIDEGDTSLVAGDLVWASDVQKEIDELTAENER 1291 Query: 1102 PGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISG 1161 + V+ G + + P+ + K + P V +L +A P L + Sbjct: 1292 NLEEAVKALSGKIFLGQEGVHPTPEITSRQKTVID-RPLVEELLKAGTPMTKLHLLDGDC 1350 Query: 1162 IVSFGKETKGKRRLV 1176 + R + Sbjct: 1351 PLDVIVGEASFRARL 1365 Score = 192 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 84/328 (25%), Positives = 147/328 (44%), Gaps = 15/328 (4%) Query: 985 IDEFGRTKESYKVPYGAVLAKGDGEQVAGGETV---ANWDPHTMPVITEVSGFVRFTDMI 1041 + G ++ + + G + + +P+ ++G D+ Sbjct: 965 TAKSGYLTRRLVDVAQDIIVLEEDCHTSKGIKIEPMKSDGKVVIPLSERIAGRTSLEDID 1024 Query: 1042 DGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFL 1101 + R + +S ++ E +R L G G D+ ++ + Sbjct: 1025 HPVSGERIVSKNELISPDKAVEI-ENIREHIWVRSPLSCESPYGICRKCYGVDLSSRKMV 1083 Query: 1102 PGKAIVQLEDGVQI-SSGDTLARIPQESGGT----KDITGGLPRVADLFEARRPKEPAIL 1156 V + I G L +GG +DIT GLPR+ LFEARRPK+ + L Sbjct: 1084 NIGEAVGVVAAQSIGEPGTQLTMRTFHTGGVRISGEDITQGLPRIEQLFEARRPKKVSYL 1143 Query: 1157 AEISGIVSFGKETKGKRRLVIT----PVDGSDPYEEMIPKWRQLNVFEGERVERGDVISD 1212 A ++G V+ +E +GKR+++I D IP + + V EG+ V+ +I+D Sbjct: 1144 AGLNGKVAEVRELEGKRKVIIEGTPNDSDVVQKVTYSIPASQSILVEEGDEVKSDTLITD 1203 Query: 1213 GPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM--LRKATIVNAG 1270 G P +L + G AV +Y+V+ +Q+VYR QGV IN+KHIEVI+R++ + + +++ G Sbjct: 1204 GYIDPQQLLEVEGQEAVQKYLVDSIQEVYRSQGVSINNKHIEVILRKVAPINRLRVIDEG 1263 Query: 1271 SSDFLEGEQVEYSRVKIANRELEANGKV 1298 + + G+ V S V+ EL A + Sbjct: 1264 DTSLVAGDLVWASDVQKEIDELTAENER 1291 Score = 174 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 91/174 (52%), Positives = 116/174 (66%), Gaps = 10/174 (5%) Query: 15 EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74 +E I++ LA+PD IR S GEVKKPETINYRT +PERDGLFC RIFGP K YEC CGK Sbjct: 3 KEIVGIRLRLATPDQIRELSHGEVKKPETINYRTLRPERDGLFCERIFGPTKSYECACGK 62 Query: 75 YK--RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPL 132 YK K +GV+C++CGVEVT +VRRERMGHIELA+P HIW+L+ +PSR+ LLL P Sbjct: 63 YKKSGPKFKGVVCDRCGVEVTDNRVRRERMGHIELAAPVVHIWYLRGIPSRLSLLLGTPT 122 Query: 133 RDIERVLYF--------ESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDA 178 + +ERV+YF +VIEG +L + + E + + +F A Sbjct: 123 KMLERVVYFAPLRKREAAYKIVIEGKRPDLAAKDDVISESEMRVHAHYDPKFKA 176 Score = 94.6 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 41/71 (57%), Positives = 51/71 (71%) Query: 1297 KVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRL 1356 +V + + GITKA+LATESF+SAASFQ+T ++L AAV + D L GLKENVI+G L Sbjct: 1605 RVPPLCKKFIHGITKAALATESFLSAASFQQTAQILAGAAVRSQVDHLMGLKENVIIGHL 1664 Query: 1357 IPAGTGYAYHQ 1367 IPAGTG Q Sbjct: 1665 IPAGTGIERFQ 1675 >UniRef50_C5YGY9 DNA-directed RNA polymerase n=716 Tax=Eukaryota RepID=C5YGY9_SORBI Length = 1857 Score = 835 bits (2157), Expect = 0.0, Method: Composition-based stats. Identities = 282/1569 (17%), Positives = 532/1569 (33%), Gaps = 257/1569 (16%) Query: 6 KFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPV 65 +F + + + + ++ + SPD IR S +++ ET+ KP+ GL R+ Sbjct: 4 RFPYSPAEVAKVELVQFGILSPDEIRQMSVVQIEHAETM--ERGKPKPGGLSDPRLGTI- 60 Query: 66 KDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIG 125 R + CE C + + GH+ELA P HI F+K++ S + Sbjct: 61 --------------DRKIKCETCMAGMAECP---GHFGHLELAKPMFHIGFIKTVLSIMR 103 Query: 126 LLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGD----------- 174 + + + + ++ ++I + D Sbjct: 104 CVCFNCSKILADEDETKFKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQEQDTDEP 163 Query: 175 -EFDAKMGAEAIQALLKSMDLEQECE----------------QLREELNETNSETKRKKL 217 + GA+ + M + E + + ++ L+ K++ Sbjct: 164 VKKRGGCGAQQPNITVDGMKMVAEFKAPKKKSDDQDQLPEPVERKQILSAERVLNVLKRI 223 Query: 218 TKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNN 277 + LL +P+WMIL VLPV PP +RP V +D + DL +I N Sbjct: 224 SDEDCLLLGLNPKYARPDWMILQVLPVPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNE 283 Query: 278 RLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRA-ITGSNKRPLKSLADMIKGKQG 336 L+R AP I+ ++LQ + DN G+ T + RP+KS+ +K K+G Sbjct: 284 NLRRQERNGAPAHIITEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEG 343 Query: 337 RFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI-- 394 R R NL+GKRVD+S R+VIT P + + + G+P +AL L P + L + Sbjct: 344 RIRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEY 403 Query: 395 -------KAAKKMVEREEAVV-----------------WDILDEVIREHPVLLNRAPTLH 430 K K + RE+ + + + VL NR P+LH Sbjct: 404 GPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLH 463 Query: 431 RLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNI 490 ++ I ++ +L+ V + YNADFDGD+M +HVP + E + E LMM I Sbjct: 464 KMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCI 523 Query: 491 LSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKV 550 +SP + P++ QD +LG +T+ + + + + G A +K Sbjct: 524 VSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWQD---FDGKIPAPAILKP 580 Query: 551 RITEYEKDANGELVAK-TSLKDTTVGRAI-----------LWMIVPKGLPYSIVNQALGK 598 R K ++ K +L + + + I L + + Sbjct: 581 RPIWTGKQVFNLIIPKQINLIRFSAWHSEEEKGFITPGDTMVRIEKGELLSGTLCKKSLG 640 Query: 599 KAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIIS--- 655 +++ + +G F + + ++G S+GI D + + I+ Sbjct: 641 TGTGSLIHIIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMQTINDTI 700 Query: 656 -EAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEE 714 +A+ EV E+ ++ + A + N ++KA D ++ Sbjct: 701 CKAKDEVKELIKKAHEKQLEAEPGRTMMESFENRVNQVLNKARDD--------AGSSAQK 752 Query: 715 KQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM--------------------AKPDGSI 754 N++ M +G++GS I Q+ G G Sbjct: 753 SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPE 812 Query: 755 IETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDC 814 + ++ GL ++F G R+GL DTA+KT+ +GY+ RRLV +D++V D Sbjct: 813 SRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGT 872 Query: 815 GTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEE 874 + + + G D D V D LK + L ++ Sbjct: 873 VRNSLGDVIQFLYGEDGM----DAVWIESQKLDSLKMKKPEFDNLFRYELDDENWRPNYM 928 Query: 875 NSVDAVKVRSVVSCDTDFGVCAHCYGRDLAR--GHIINKGE---AIGVIAAQSIGEPGTQ 929 ++++ F D + I G+ + V + I Sbjct: 929 LPEHVDDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIWNAQKT 988 Query: 930 LTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSG------KLVITSRNTELK 983 + E+ +++ + + + + + +++ S + Sbjct: 989 FRIDFRRPSDMHPMEIVEAVDKLQERLKVVPGDDPMSIEAQKNATLFFNILLRSTFASKR 1048 Query: 984 LIDEFGRTKESYKVPYGAVL------AKGDGEQV--AGGETVANWDPHTMPVITEVSGFV 1035 ++ E+ TKE+++ G + GE + +++ +G Sbjct: 1049 VLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVS 1108 Query: 1036 RFTDMIDGQTITRQTDELTGLSSLVVLDS-AERTAGGKDLRPALKIVDAQ---------- 1084 + + + + + + K+L ++ Sbjct: 1109 AKNVTLGVPRLREIINVAKKIKTPSLSVYLKPEVNQKKELAKNVQCALEYTTLRSVTHAT 1168 Query: 1085 ---------GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQE-----SGG 1130 G + + + Y +P + I D +IS + +E Sbjct: 1169 EIWYDPDPLGTIIEEDAEFVQSYYEMPDEDI----DPDKISPWLLRIELNREMMVDKKLS 1224 Query: 1131 TKDITGGLPR---------------VADLFEARRPKEPAI--------------LAEISG 1161 DI + R + R + A L +I G Sbjct: 1225 MADIADKINREFDDDLSCIFNDDNADKLILRIRITNDEAPKGEIQDESAEDDVFLKKIEG 1284 Query: 1162 ---IVSFGKETKGKRRLVITP--------VDGSDPYEEMIPKWRQLNVFEGERVERGDVI 1210 + ++ I +G E + +N+ E D Sbjct: 1285 NMLTEMALRGIPDINKVFIKEGKVNTFYQDEGFKAANEWMLDTEGVNLLAVMCHEDVDAT 1344 Query: 1211 SDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAG 1270 +++ + G+ AV R +++E++ V G +N +H+ ++ M Sbjct: 1345 RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMT--------- 1395 Query: 1271 SSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLAT--ESFISAASFQET 1328 Y L+ IT+ + + SF+ET Sbjct: 1396 -------------------------------YRGHLMAITRHGINRNDTGPLMRCSFEET 1424 Query: 1329 TRVLTEAAVAGKRDELRGLKENVIVGRLIPAGT-GYAYHQDRMRRRAAGEAPAAPQVTAE 1387 +L +AAV + D LRG+ EN+++G+L P GT G A + + + A E V Sbjct: 1425 VDILLDAAVYAESDHLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVEGL 1484 Query: 1388 DASASLAEL 1396 D + A Sbjct: 1485 DFGMTPARS 1493 >UniRef50_C1TLI9 DNA-directed RNA polymerase n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TLI9_9BACT Length = 1180 Score = 833 bits (2152), Expect = 0.0, Method: Composition-based stats. Identities = 408/875 (46%), Positives = 574/875 (65%), Gaps = 33/875 (3%) Query: 138 VLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQE 197 V+ ++VI G + + ++ + + + +F A +GAE ++ +L ++D++ Sbjct: 305 VVEDPCFLVINGSESPFDDGDVILDREQY-LCSHYDKKFRAGIGAEGVREMLDTLDMDHL 363 Query: 198 CEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDG 257 +QLREEL+ET S KR+KL KR++++E F + P+ M+L VLPV+PPDLRP+V LDG Sbjct: 364 AQQLREELSET-SGQKRRKLVKRLQVVEDFRKGDCNPQSMVLEVLPVIPPDLRPMVQLDG 422 Query: 258 GRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAIT 317 GRFATSDLNDLYRRVINRNNRL++L +L AP+IIVRNEKRMLQE+VDAL+DNGR G+A+ Sbjct: 423 GRFATSDLNDLYRRVINRNNRLRKLQELRAPEIIVRNEKRMLQESVDALIDNGRMGKAVL 482 Query: 318 GSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELF 377 G+ RPLKSL+D+++GK+GRFRQNLLGKRVDYSGRSVIT+GP L+++QCGLPK+MALELF Sbjct: 483 GAGNRPLKSLSDLLRGKKGRFRQNLLGKRVDYSGRSVITIGPNLKIYQCGLPKQMALELF 542 Query: 378 KPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAF 437 KPF+ KL G+A +K+ K+M+ER + +W IL+E+I++HPV+LNRAPTLHRLGIQAF Sbjct: 543 KPFVIQKLVDLGIAPNVKSGKRMIERGKEEIWAILEEIIKDHPVMLNRAPTLHRLGIQAF 602 Query: 438 EPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGE 497 EPVL+EGKAI+LHPLVC A+NADFDGDQMAVHVPL++EAQ EAR LM+S NNILSPA+G+ Sbjct: 603 EPVLMEGKAIRLHPLVCTAFNADFDGDQMAVHVPLSVEAQAEARMLMLSANNILSPASGK 662 Query: 498 PIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEK 557 PI+ PSQD++LG+YY+T GEG + G+ ++AR+++R Sbjct: 663 PIVAPSQDIILGIYYLTNLREGMTGEGKYFDSFDDVLTALDHGIVHVNARIRMRWNHEWG 722 Query: 558 DANGELVAK--------TSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCY 609 + ++ +T+ GR + +PK L ++ LGKK +S++L+ Y Sbjct: 723 NWKDKVDQWGVSFLDESGKWFETSPGRVLFNSYLPKKLR--FLDGQLGKKDLSRLLDLGY 780 Query: 610 RILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQ 669 + + V D I G+ +A SG S + D+VIP++K +++S + E EI+ Q+ Sbjct: 781 NEVSRQEMVEMLDSIKGLGYHWATLSGISFCVTDVVIPKEKEDVVSTSLVEDDEIRNQYD 840 Query: 670 SGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSG 729 G+++ E + +W+ A V A+++++ + N + MM DSG Sbjct: 841 MGVLSEDEYLLQKETLWSKAAADVGNAILNHMGHD---------------NPVRMMVDSG 885 Query: 730 ARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALK 789 ARGS Q+ Q+AG+RGLMA P G II+ PIT NFREG+N+L+YFISTHGARKGLADTAL+ Sbjct: 886 ARGSRGQLAQMAGIRGLMADPTGRIIDYPITTNFREGMNMLEYFISTHGARKGLADTALR 945 Query: 790 TANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVL 849 TA SGYLTRRLVDV+QD+++TEDDCGT +G+ + P+ G P+ +R+ GR + DV Sbjct: 946 TAKSGYLTRRLVDVSQDVIITEDDCGTEKGVKIEPLESDGKTVIPISERIAGRTSLNDVN 1005 Query: 850 KPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHII 909 P T D++V ++ ++ + VRS ++C T G+C CYG DLA ++ Sbjct: 1006 DPETGDLIVGAGEIITPDLASRIDSCGFKEIWVRSPMTCTTRHGICQKCYGVDLATRSVV 1065 Query: 910 NKGEAIGVIAAQSIGEPGTQLTMRTFHIGG--AASRAAAESSIQVKNKGSIKLSNVKSVV 967 + GEA+GV+AAQSIGEPGTQLTMRTFH GG + +++ + SV+ Sbjct: 1066 DIGEAVGVVAAQSIGEPGTQLTMRTFHTGGVRITGEDITQGLPRIEQLFEARRPKKVSVL 1125 Query: 968 NSSGKLVITSRNTE----LKLIDEFGRTKESYKVP 998 VI R E + + T P Sbjct: 1126 AGVDGKVIEIREMEGKRKVIITPRSPGTNRRSPTP 1160 Score = 167 bits (422), Expect = 3e-39, Method: Composition-based stats. Identities = 85/175 (48%), Positives = 110/175 (62%), Gaps = 12/175 (6%) Query: 15 EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74 E +++ LASP IR S GEVKKPETINYRT +PE+DGLFC RIFGP K +EC CGK Sbjct: 4 REIVGVRVRLASPGEIRGLSTGEVKKPETINYRTLRPEKDGLFCERIFGPTKSFECACGK 63 Query: 75 YK--RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPL 132 YK K +GVIC++CGVEVT +VRRERMGHIELA+P HIW+L+ +PSR+ LLL Sbjct: 64 YKKSGPKFKGVICDRCGVEVTDNRVRRERMGHIELAAPVVHIWYLRGIPSRLSLLLGTAT 123 Query: 133 RDIERVLYFESYVVIEGGMTN---------LERQQILTEEQYLDALEEFGDEFDA 178 + +E+V+YF E +R I++E + + +F A Sbjct: 124 KMLEKVVYFAPIRKREPAFKVVIEGKRSDLAKRGDIVSESEVRLHCH-YDPKFKA 177 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 44/188 (23%), Positives = 74/188 (39%), Gaps = 5/188 (2%) Query: 1013 GGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGK 1072 E + + +P+ ++G D+ D +T ++ + Sbjct: 977 KIEPLESDGKTVIPISERIAGRTSLNDVNDPETGDLIVGAGEIITPDLASRIDSCGFKEI 1036 Query: 1073 DLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDTLARIPQESGGT 1131 +R + G G D+ + + V + I G L +GG Sbjct: 1037 WVRSPMTCTTRHGICQKCYGVDLATRSVVDIGEAVGVVAAQSIGEPGTQLTMRTFHTGGV 1096 Query: 1132 ----KDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYE 1187 +DIT GLPR+ LFEARRPK+ ++LA + G V +E +GKR+++ITP Sbjct: 1097 RITGEDITQGLPRIEQLFEARRPKKVSVLAGVDGKVIEIREMEGKRKVIITPRSPGTNRR 1156 Query: 1188 EMIPKWRQ 1195 P R+ Sbjct: 1157 SPTPSLRR 1164 >UniRef50_Q05FH9 DNA-directed RNA polymerase subunit beta' n=17 Tax=Candidatus Carsonella ruddii RepID=RPOC_CARRP Length = 1292 Score = 828 bits (2139), Expect = 0.0, Method: Composition-based stats. Identities = 458/1351 (33%), Positives = 718/1351 (53%), Gaps = 89/1351 (6%) Query: 17 FDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYK 76 F + I +AS I SWSFGEV IN++ KPE +GLFC +IF D+E C K K Sbjct: 6 FKKVSIKMASSSKILSWSFGEVTHSNFINFKNLKPEPNGLFCLKIF---SDFELCCLKKK 62 Query: 77 RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIE 136 C + ++GHI+L P HIW++KS S I +L++ + +E Sbjct: 63 ------CFCHNDKFLNLKKAHTGYKVGHIKLFYPAVHIWYIKSSHSNISNILNLSYKILE 116 Query: 137 RVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQ 196 +++ F+ VVI+ +++ + ++ + + GA+A++ LL +L Sbjct: 117 KIINFKLKVVIKSYDIKIKKFNLFIFDK------KIKNIIFTLSGAKALKKLLSDRELFI 170 Query: 197 ECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLD 256 +C L+ ++ + NS +K + K I + F SGNKP WM+L +PVLPP +RPL+ L Sbjct: 171 DCLILKIKIKKCNSFSKLFSILKHINKILIFYYSGNKPSWMVLKKIPVLPPRMRPLIALS 230 Query: 257 GGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAI 316 +FA+SD+N+LY+ V+ RN +LK++ P ++ NE+ LQE++ AL DN + I Sbjct: 231 EKKFASSDINELYKIVLERNYKLKKMTTYLDPKQLLINERISLQESIYALFDNEKLINPI 290 Query: 317 TGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALEL 376 S+KR LKS + +IKGK GRFRQNLLGKRVD+SGR+VITV P L L++C +P +ALEL Sbjct: 291 LTSSKRVLKSFSSLIKGKYGRFRQNLLGKRVDFSGRTVITVEPNLFLYECKIPIYIALEL 350 Query: 377 FKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQA 436 FKP +Y +L+ + + TTI ++ + + +L ++ + ++LNRAPTLHR+ Q+ Sbjct: 351 FKPILYYELKKKKIITTISFIDDYYKKNKKQIILLLKNKVKSYFIMLNRAPTLHRMNFQS 410 Query: 437 FEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANG 496 F+ +L E K I++HPLVC YNADFDGDQMA+H+PLT A++E+ L++S NNI+SP+NG Sbjct: 411 FKILLTEDKTIKIHPLVCLCYNADFDGDQMAIHLPLTNNAKVESNYLLLSINNIISPSNG 470 Query: 497 EPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYE 556 II+P+QD+++G+YY T + K + + L + + + +K + Sbjct: 471 NAIIIPTQDIIMGIYYFT---FDFKNKSISLNDINDIINFFEFNNYNFQINIKFNNKKK- 526 Query: 557 KDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKP 616 +TT+GR I+ + K Y +N KK ++ ++ + L Sbjct: 527 -------------INTTLGRIIINYLFFKNFDY-FLNIVFKKKILTYLIKYLFDFNQLSK 572 Query: 617 TVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAG 676 +I +++ GF + SG ++ D++ E++ F V Sbjct: 573 IIIILEKLKKIGFLISTYSGITISYFDLI-----------------EVKNTFLINKVVFK 615 Query: 677 ERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQ 736 +YN I + + + + + + N++++M DSG+RGS Q Sbjct: 616 LKYNNNIF-------SIVELLNNFFVKIIIKKIQINKTGLKKTNNLFIMLDSGSRGSMLQ 668 Query: 737 IRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYL 796 I+QL RG +K +G II+ PI N + GLN+ YFIST GARKGL DT+LKTANSGYL Sbjct: 669 IKQLIAFRGFFSKSNGDIIKDPIFDNLKNGLNMKNYFISTFGARKGLTDTSLKTANSGYL 728 Query: 797 TRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADI 856 TR+L+DV+ DLV+ + DC T GI + + L + GR+ V I Sbjct: 729 TRKLIDVSHDLVIYKIDCKTKTGIKI--FLNSYFTLVELYKNLYGRLLLFSVSLK--NKI 784 Query: 857 LVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIG 916 L+ NTL+ + LL + ++ + VRSV+ C ++ GVC CYG DL+ I+ G ++G Sbjct: 785 LLKENTLIDNKVLFLLIKKKINTIFVRSVLFCISNRGVCCFCYGIDLSTNKIVLIGVSVG 844 Query: 917 VIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVIT 976 +I+AQSIGEPGTQLTMRTFH GG AS ++ + N G +K K V+N G+++I Sbjct: 845 IISAQSIGEPGTQLTMRTFHTGGVASYFFYSDNLIISNSGFVKFKKCKCVINKFGEVIIV 904 Query: 977 SRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVR 1036 S E + E YK YG + +G + + N++ + + +E G+V Sbjct: 905 SLYGEFMIF--NKIILEKYKFYYGTKIKFRNGFLIKKNTKLINFNDNNFYIYSENIGYVY 962 Query: 1037 FTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMP 1096 F E + + + D+ K+ + + I + Sbjct: 963 FKK------------ENNIVKNYCLEDNKFYYKTLKNFK------------ITIINKSIK 998 Query: 1097 AQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAIL 1156 YF+P + + I G+ +A++ + I GGLPR+++LFEAR PK A+L Sbjct: 999 KNYFIPKNFNIVVYCYDYIFPGEIIAKLVSVTILKSSIIGGLPRLSELFEARIPKLKALL 1058 Query: 1157 AEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEA 1216 +EI G+ ++ E + R+L + G+ V+ GD++SDG Sbjct: 1059 SEIDGVCKIKFSHLNY--IITIISKFGFYKEYTLSCLRKLYINNGDYVKIGDILSDGKPD 1116 Query: 1217 PHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLE 1276 ++I+ L ++ + Y VNE+ +Y Q + +N KHIE+I++QM +K I+ +G S + Sbjct: 1117 LNEIINLISINYLLSYFVNEINSIYFPQNIYVNCKHIELILKQMTKKVKIIFSGESSCQQ 1176 Query: 1277 GEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAA 1336 G+ + N N + + Y R + GITK SL + SF SAASFQET ++L +A Sbjct: 1177 GDILFLEDAINENFSTLVNSRRLSYYKRIVTGITKTSLESLSFFSAASFQETNKILVNSA 1236 Query: 1337 VAGKRDELRGLKENVIVGRLIPAGTGYAYHQ 1367 + + D L GLKENV+VGRLIPAGTG + Sbjct: 1237 IKNRTDYLLGLKENVLVGRLIPAGTGLIKYF 1267 >UniRef50_A4FPP2 DNA-directed RNA polymerase subunit beta' n=54 Tax=Bacteria RepID=RPOC_SACEN Length = 1303 Score = 826 bits (2133), Expect = 0.0, Method: Composition-based stats. Identities = 453/1002 (45%), Positives = 606/1002 (60%), Gaps = 53/1002 (5%) Query: 155 ERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKR 214 RQ I E Y + + FG+ F MGAE+IQALL+ D+ E +QLRE + + K Sbjct: 231 PRQLIADELLYRELYDRFGEYFTGGMGAESIQALLQDFDINAEADQLRETIRSGKGQKKL 290 Query: 215 KKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVIN 274 + L KR+K++ AF +GN P M+L +PV+PPDLRP+V LDGGRFATSDLNDLYRRVIN Sbjct: 291 RAL-KRLKVVAAFQATGNNPSGMVLNCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVIN 349 Query: 275 RNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGK 334 RNNRLKRL+DL AP+IIV NEKRMLQE+VDAL DNGRRGR +TG RPLKSL+D++KGK Sbjct: 350 RNNRLKRLIDLGAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGK 409 Query: 335 QGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI 394 QGRFRQNLLGKRVDYSGRSVI VGP L+LHQCGLPK+MA+ELFKPF+ +L A I Sbjct: 410 QGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKEMAVELFKPFVMKRLVDLNHAQNI 469 Query: 395 KAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVC 454 K+AK+MVER+ VWD+L+EVI EHPVLLNRAPTLHRLGIQAFEP L+EGKAIQLHPLVC Sbjct: 470 KSAKRMVERQRPQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVC 529 Query: 455 AAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT 514 A+NADFDGDQMAVH+PL+ EAQ EAR LM+S+NNILSPA+G P+ +P D+V GLY++T Sbjct: 530 EAFNADFDGDQMAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYHLT 589 Query: 515 RDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKD----ANGELVAKTSLK 570 R AKGEG + EA + G L A+VK+R+ + + + L Sbjct: 590 RQLDGAKGEGQSFSSVGEAIMAFDRGGLDLQAKVKIRVRDLVPNAEQRPEDWEPGQPWLA 649 Query: 571 DTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFA 630 +TT+GR ++P+ P VN L KK + ++N + D++ GF Sbjct: 650 ETTLGRVWFNELLPEDYP--FVNDLLPKKRQAAIVNDLAERYPMVTVAQTLDKLKDAGFH 707 Query: 631 YAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAAN 690 +A RSG +V I D+V+P K EI+ EA+ +++++++ G ++ ER +++ +W AA Sbjct: 708 WATRSGVTVSISDVVVPPNKTEILDGYEAKADQVEKRYRRGALSYQERNAELVKVWTAAK 767 Query: 691 DRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKP 750 D V++AM N NSI M+ SGA G+ Q+ QLAGMRGL++ P Sbjct: 768 DEVAEAMEANF---------------PEDNSISMIVKSGAAGNMTQVVQLAGMRGLVSNP 812 Query: 751 DGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVT 810 G I PI ANFREGL+VL+YFIS HGARKGLADTAL+TA+SGYLTRRLVDV+QD++V Sbjct: 813 KGEYIPRPIKANFREGLSVLEYFISNHGARKGLADTALRTADSGYLTRRLVDVSQDVIVR 872 Query: 811 EDDCGTHEGIM--MTPVIEGGDVKE--PLRDRVLGRVTAEDVLKPGTADILVPRNTLLHE 866 E DCGT GI + + G + + V R TAEDV ++++ R + L + Sbjct: 873 ETDCGTERGIRMPIAEKLPDGKLLRDAHVETSVYARTTAEDVTD-SDGNVVLARGSDLGD 931 Query: 867 QWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEP 926 + L V VKVRSV++C++ GVCA CYGR +A G +++ GEA+G++AAQSIGEP Sbjct: 932 PAIEKLLAAGVTKVKVRSVLTCESGVGVCAVCYGRSMATGKLVDVGEAVGIVAAQSIGEP 991 Query: 927 GTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVK-SVVNSSGKLVITSRNT--ELK 983 GTQLTMRTFH GG A +V+ ++ K + ++ G++ + + ++ Sbjct: 992 GTQLTMRTFHQGGVAGDDITTGLPRVQELFEARVPKGKAPIADAPGRIRMEDNDRYWKIT 1051 Query: 984 LIDEFGRTKESY-KVPYGAVL----------AKGDGEQVAGGETVAN--WDPHTMPVITE 1030 +I + G + Y K+ L DG+ V G+ + DPH + + Sbjct: 1052 IIPDDGSEEIVYDKLSKRQRLAAISVDGTERQITDGDHVDVGQQLLEGAVDPHEVLRVMG 1111 Query: 1031 VSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLI 1090 + Q + V++ R I+ G + Sbjct: 1112 PREAQLHLVREVQEVYRSQGVGIHDKHVEVIVRQMLRRV----------IIIDSGATEFL 1161 Query: 1091 PGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTK 1132 PG+ + F V E G S L I + S T+ Sbjct: 1162 PGSPVERSQFEGENRRVVAEGGDPASGRPVLMGITKASLATE 1203 Score = 316 bits (809), Expect = 4e-84, Method: Composition-based stats. Identities = 127/364 (34%), Positives = 187/364 (51%), Gaps = 13/364 (3%) Query: 1054 TGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGV 1113 + L + +R L G + G M + V + Sbjct: 927 SDLGDPAIEKLLAAGVTKVKVRSVLTCESGVGVCAVCYGRSMATGKLVDVGEAVGIVAAQ 986 Query: 1114 QI-SSGDTLARIPQESGGT--KDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETK 1170 I G L GG DIT GLPRV +LFEAR PK A +A+ G + + Sbjct: 987 SIGEPGTQLTMRTFHQGGVAGDDITTGLPRVQELFEARVPKGKAPIADAPGRIRMEDNDR 1046 Query: 1171 GKRRLVITPVDGSDPYEEMIPKWRQLN----------VFEGERVERGDVISDGPEAPHDI 1220 + +I + + + K ++L + +G+ V+ G + +G PH++ Sbjct: 1047 YWKITIIPDDGSEEIVYDKLSKRQRLAAISVDGTERQITDGDHVDVGQQLLEGAVDPHEV 1106 Query: 1221 LRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQV 1280 LR+ G ++V EVQ+VYR QGV I+DKH+EVIVRQMLR+ I+++G+++FL G V Sbjct: 1107 LRVMGPREAQLHLVREVQEVYRSQGVGIHDKHVEVIVRQMLRRVIIIDSGATEFLPGSPV 1166 Query: 1281 EYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGK 1340 E S+ + NR + A G A+ L+GITKASLATES++SAASFQETTR+LT AA+ G Sbjct: 1167 ERSQFEGENRRVVAEGGDPASGRPVLMGITKASLATESWLSAASFQETTRILTNAAIEGA 1226 Query: 1341 RDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQVTAEDASASLAELLNAG 1400 D+L GLKENVI+G+LIPAGTG +++ + AA + + D ++ G Sbjct: 1227 SDKLVGLKENVIIGKLIPAGTGINRYRNIQVQPTEEARAAAYAIPSYDDGYYTPDVFGTG 1286 Query: 1401 LGGS 1404 G + Sbjct: 1287 TGAA 1290 Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats. Identities = 110/291 (37%), Positives = 165/291 (56%), Gaps = 10/291 (3%) Query: 17 FDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYK 76 FD ++I LA+ D IR WS+GEVKKPETINYRT KPE+DGLFC +IFGP +D+EC CGKYK Sbjct: 7 FDELRIGLATADDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWECYCGKYK 66 Query: 77 RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIE 136 R++ +G+ICE+CGVEVT+ KVRRERMGHIELA+ HIW+ K +PSR+G LLD+ +D+E Sbjct: 67 RVRFKGIICERCGVEVTRAKVRRERMGHIELAASVTHIWYFKGVPSRLGYLLDLAPKDLE 126 Query: 137 RVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEA--IQALLKSMDL 194 +++YF +YV+ + E + ++ D+ DA + A A ++A L ++ Sbjct: 127 KIIYFAAYVITSVNTEMRHNEMSTLEAEIGVERKQIADQRDADLEARAQKLEADLAELEQ 186 Query: 195 EQECEQLREELNETNSETKRKKLTKRIKLLEAFVQ-----SGNKPEWMILTVLPVLPPDL 249 E +R ++ E R+ + + L+ + + +P +I L Sbjct: 187 EGAKSDVRRKVKEGGEREMRQLRDRAQRELDKLDEIWETFTKLEPRQLIADELLYRELYD 246 Query: 250 RPLVPLDGGRFATSDLNDLYR--RVINRNNRLKRLLDLAAPDIIVRNEKRM 298 R GG A S L + + ++L+ + +R KR+ Sbjct: 247 RFGEYFTGGMGAESIQ-ALLQDFDINAEADQLRETIRSGKGQKKLRALKRL 296 >UniRef50_D2V0G9 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2V0G9_NAEGR Length = 1426 Score = 826 bits (2132), Expect = 0.0, Method: Composition-based stats. Identities = 272/1518 (17%), Positives = 496/1518 (32%), Gaps = 306/1518 (20%) Query: 14 TEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCG 73 + IK ++ +P+ IR S ++ + G R+ Sbjct: 26 PKRISQIKFSVFTPEDIRRMSTVQIYNQHYYTPDK-RGFPHGPLDPRLGT---------- 74 Query: 74 KYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLR 133 + ICE CG+ V G+++L P HI F+ ++ + + R Sbjct: 75 -----GTKKDICETCGLGVADCI---GHYGYVKLELPVFHIGFISNVVEVLQRICKDCSR 126 Query: 134 DIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMD 193 + +S+ + ++++ L ++ + E + ++ + ++ Sbjct: 127 VLLSDSEIQSFRNKFKRPMDNQQKKALYKK-----VGELCKKCSQCPHCGSLNGKVTKLN 181 Query: 194 LEQECEQL-----------------------------------------REELNETNSET 212 + + ++++N Sbjct: 182 AIKIVHEKYKVASTRKGKDDIDQQSREFQSEFGLAVQLNPEIEPFLGEAQDDINPIRCLR 241 Query: 213 KRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRV 272 K ++ + +PE ILT + V P +RP V DGG DL +++ Sbjct: 242 LFKNISDTDVEVLNMNPKVVRPENFILTHILVPPLVIRPTVNTDGGT-NEDDLTAQMKKI 300 Query: 273 INRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIK 332 I N L+ ++ A + LQ +++ R + K+ K+L +K Sbjct: 301 IETNIILRESVEQGAIVQNFMEKWDTLQLETALYINSDTRNIPSFVTKKKVSKTLCQRLK 360 Query: 333 GKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLAT 392 GK GRFR NL GKR +++GR+VI+ P L ++Q +P+ +A L P + + + L + Sbjct: 361 GKHGRFRGNLSGKRANFTGRTVISPDPNLEINQVAIPELVAKVLTYPEVVNRTNKKLLQS 420 Query: 393 TIKAAKKMVEREEAVVWD-------------------------ILDEVIREHPVLLNRAP 427 I ++ V+ + V+ L NR P Sbjct: 421 LILNGPEVHPGANFVIKSDGIRKNLAFAKDKMEVAKNLKFGDIVERHVMNGDYALFNRQP 480 Query: 428 TLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMST 487 +LHRL I ++ + + + CA YNADFDGD+M VH+P T EA+ EA LM Sbjct: 481 SLHRLSIMCHRVKVLPYRTFRFNVCDCAPYNADFDGDEMNVHIPQTEEAKAEAGMLMDIL 540 Query: 488 NNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHAR 547 N+++P NG+P+I +QD + + MTR + + Sbjct: 541 KNLITPKNGDPVISCNQDFLTAAWKMTRKNTFFDRAEFCMLCSY-MGIEDKKIDLPPPTI 599 Query: 548 VKVRITEYEKDANGELVA---------------KTSLKDTTVGRAILWMIVPKG-LPYSI 591 +K K LV K LKD T+ ++ L Sbjct: 600 LKPIELWTGKQLFSLLVKPNNNTNVFVNFETKAKNYLKDETMCPNDGYVCFRNSYLICGN 659 Query: 592 VNQALGK-KAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMV----I 646 +++ + + S + R +G ++ + G S+GIDD++ + Sbjct: 660 LDKKILGDGSKSSLFYVLIRTVGPAYAAACMARVARVASRWLMNYGFSIGIDDVMPSAQL 719 Query: 647 PEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETV 706 EKK I+SE A E + ++ G + N + A N L Sbjct: 720 TEKKKMILSEGYAVCDEYIKLYKDGKLEPQPGCNMEQTLEAKLN--------RELSEIRG 771 Query: 707 INRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSII----------- 755 ++ N+ M+ G++GS I Q+ G I Sbjct: 772 RAGSMCLDELHWLNAPLTMSVCGSKGSVINISQMIACVGQQTVGGTRIANGFMNRTLPHF 831 Query: 756 ---------ETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQD 806 + ++ +F GL ++F T G R+G+ DTA+KTA +GY+ RRL+ +D Sbjct: 832 PMFARDPAAKGFVSNSFFTGLTPTEFFFHTMGGREGIVDTAVKTAETGYMQRRLMKALED 891 Query: 807 LVVTEDDCGTHEGIMMTPVIEGGDVKEP--LRDRVLGRVTAEDVLKPGTADILV------ 858 L V D + G D +P + GR + +I + Sbjct: 892 LFVAYDGSVRSADNTVIQFKYGDDGMDPHRMESEESGRPLNFTFVMMHEKNINLPTKDEK 951 Query: 859 -----------------PRNTLLHEQWCDLLEENSVDAVK-------------------- 881 + + +++ D L + + + Sbjct: 952 ALTPDEIRQKLDSFLKEKESNIFSDKFIDELSTFTNNYIFKLENLLKGVAAANSIRDENE 1011 Query: 882 -------VRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRT 934 V + R + GE +G IA QSIGEP TQ+T++T Sbjct: 1012 NNAWEKVVHYIEKITDRQLTSFFRACRSKYFRALAEPGEPVGGIAGQSIGEPTTQMTLKT 1071 Query: 935 FHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELK--LIDEFGRTK 992 FH G AS + +K +++++ + L L + + Sbjct: 1072 FHFAGVASMNVTLGVPR-----------IKEIIDATKNISTPIITAYLDTPLTATKKQKE 1120 Query: 993 ESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDE 1052 + +V G + G+ V V G + Sbjct: 1121 MAARVVKGRIEKTTLGQVVNYIREVY----------------------NLGICYIEIDLD 1158 Query: 1053 LTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDG 1112 + +S+L + + E P +K + K V++ Sbjct: 1159 VKQISALQLDITPETVKNSILYSPLMKFEKGKEKSKDKTKLSDEPNLVQIQKGKVRVYPP 1218 Query: 1113 VQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGK 1172 + + I G+P A++ E G V Sbjct: 1219 SVDRDRMYFNIQKLKRYLPEVIVAGIP----------TTNRAVINEEKGNVYL------- 1261 Query: 1173 RRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRY 1232 ++ L V V + +I + G+ + + Sbjct: 1262 ----------------LVEGTDLLAVMGTPGVLAK---TTKTNNIIEISQTLGIESARQL 1302 Query: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANREL 1292 I++E++ G+ I+ +HI+++ M K Sbjct: 1303 IMDEIKYTTGSYGMNIDTRHIKLLADIMTFK----------------------------- 1333 Query: 1293 EANGKVGATYSRDLLGITKASLAT--ESFISAASFQETTRVLTEAAVAGKRDELRGLKEN 1350 D+ GI + + +S + ASF++TT L EAA + D++ G+ E Sbjct: 1334 -----------GDIFGIQRHGIIKIRDSVLKMASFEQTTDHLFEAASHTRVDDVNGVSEC 1382 Query: 1351 VIVGRLIPAGTGYAYHQD 1368 +I+G IP GTG Sbjct: 1383 IIMGVPIPIGTGLFRLLQ 1400 >UniRef50_O94666 DNA-directed RNA polymerase III subunit rpc1 n=5 Tax=Eukaryota RepID=RPC1_SCHPO Length = 1405 Score = 822 bits (2124), Expect = 0.0, Method: Composition-based stats. Identities = 272/1554 (17%), Positives = 509/1554 (32%), Gaps = 324/1554 (20%) Query: 5 LKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGP 64 +K + ++ + P+ EV + + P G + Sbjct: 1 MKDPIDDQIPKRIKHLQFGINGPEEFVKDGTVEVSRRDLYTMTDRSPAEHGALDLHMGTS 60 Query: 65 VKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRI 124 ++ + C CG + G+++LA P HI + K+ + + Sbjct: 61 ---------------NKQINCATCGESMADC---MGHFGYVKLALPVFHIGYFKATLTIL 102 Query: 125 GLLLDMPLRDIERVLYFESYVV--IEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMG- 181 + + ++ G+ NL R QI + DA G Sbjct: 103 QNICKDCSSVLLSDQEKRQFLKDLRRPGIDNLRRSQICKRINDHCKKMRRCSKCDAMQGV 162 Query: 182 ----------AEAIQALLKSMDLEQECEQ------------------LREELNETNSETK 213 E + + KS D E+ ++LN Sbjct: 163 VKKAGPLKIIHERFRYVRKSQDDEENFRHSFDEALKTIPELKMHLSKAHDDLNPLKVLNL 222 Query: 214 RKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVI 273 K++T L +PE ++ +P P +RP V +G DL +I Sbjct: 223 FKQITPVDCELLGMDPEHGRPENLLWRYVPAPPVCIRPSVAQEGATT-EDDLTVKITEII 281 Query: 274 NRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKG 333 ++ ++ L P + + +Q ++ +++ G + +P++ +KG Sbjct: 282 WTSSLIRAALSKGTPISNLMEQWEFMQLSIAMYINSEMPGLRPSDMPSKPIRGFCQRLKG 341 Query: 334 KQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATT 393 KQGRFR NL GKRVD+SGR+VI+ P LR+ Q +P ++A L P + L Sbjct: 342 KQGRFRGNLSGKRVDFSGRTVISPDPNLRIDQVAVPYRIAKILTFPERVTTQNKKHLQDC 401 Query: 394 IKAAKKMVER------------------------EEAVVWD-ILDEVIREHPVLLNRAPT 428 I+ + ++ + D + + VL NR P+ Sbjct: 402 IRNGPDVHPGANYVIDRESGFKRFLRFGNRNRIADDLKIGDIVERHLHDNDVVLFNRQPS 461 Query: 429 LHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTN 488 LH+L I A + + ++ + VC YNADFDGD+M +HVP T EA+ EA LM N Sbjct: 462 LHKLSIMAHLVKVRPWRTLRFNECVCGPYNADFDGDEMNLHVPQTEEAKTEALELMGIKN 521 Query: 489 NILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARV 548 N++SP NGEPII +QD + Y ++ + + A + Sbjct: 522 NLVSPRNGEPIIAATQDFITAAYLLSLKDTFLDRKSIS-NICCYMMDASTHIDLPPPAII 580 Query: 549 KVRITEYEKDANGELVAKTSL-------------------KDTTVGRAILW-MIVPKGLP 588 K R K L+ K + + MI + Sbjct: 581 KPRCLWTGKQVFTVLMKPNRFSKVLVNLDAKTRSFSRIKSKTPEMCPKDGYLMIRNSEII 640 Query: 589 YSIVNQALGKKAIS-KMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMV-- 645 +V++++ + R G ++ + G S+GI+D+ Sbjct: 641 AGVVDKSVVGDGKKDSLFYVILRDYGALEAAEAITRLSKMCARFLGNRGFSIGIEDVQPG 700 Query: 646 --IPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQT 703 + +K ++++A A + Q+ G++ ++ + A + +SK D Sbjct: 701 KSLSSQKEILVNKAYATSDDFIMQYAKGILECQPGMDQEATLEAKISSTLSKVRDD---- 756 Query: 704 ETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSI--------- 754 + ++ NS +MA G++GS + Q+ G + Sbjct: 757 ----VGEICMDELGPANSPLIMATCGSKGSKINVSQMVACVGQQIISGKRVPDGFQDRSL 812 Query: 755 -----------IETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDV 803 + ++ +F GL ++ R+GL DTA+KTA +GY++RRL+ Sbjct: 813 PHFHKNSKHPLAKGFVSNSFYSGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKS 872 Query: 804 AQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDR------------------------- 838 +DL D + + G D +P Sbjct: 873 LEDLSSAYDGTVRSSNSDVVQFVYGDDGLDPTYMEGDGQAVEFKRTWIHSVNLNYDRHDS 932 Query: 839 ---------VLGRVTAEDVLK-PGTADILVPRNTLLHEQWCDLLEE-------------- 874 + R + D + T + E L Sbjct: 933 AMLPYEIIDYVNRALDDPKFLTNCNRDFIETIRTFVIENIAKYLASVRERRDLAPMLEEP 992 Query: 875 --------NSVDAVKVRSVVSCDTDFGVCAHC------YGRDLARGHIINKGEAIGVIAA 920 + V S + V + + G A+G I A Sbjct: 993 DMDDLDDMEGDEFAPVAKRKSVENIIRVTEKQLRSFVDRCWEKYMRAKVEPGTAVGAIGA 1052 Query: 921 QSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNT 980 QSIGEPGTQ+T++TFH G A++ + + +K ++N++ + Sbjct: 1053 QSIGEPGTQMTLKTFHFAGVAAQTT------------LGVPRIKEIINAAKTISTPIITG 1100 Query: 981 ELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDM 1040 +L R + S +V G + E+ + + + PV T +S V F Sbjct: 1101 QLI----NDRDERSARVVKGRI------EKTYLKDVTSYIEEVYGPVTTYLSIQVNF--- 1147 Query: 1041 IDGQTITRQTDELTGL-SSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQY 1099 TI++ ++T + + ++ + + + + + + Y Sbjct: 1148 ---DTISKLQLDITLADIAAAIWNTPKLKIPSQQVTVNNTLQQIHVHTSSDGKSSETEVY 1204 Query: 1100 FLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEI 1159 + + + G+P + +++ + Sbjct: 1205 Y---------------------RLQTYKRVLPDVVVAGIPTI----------NRSVINQE 1233 Query: 1160 SGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHD 1219 SG + E G + ++ T + Sbjct: 1234 SGKIELFMEGTGLQAVMNTEGIVGTK--------------------------TSTNHVME 1267 Query: 1220 ILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQ 1279 + + G+ A I++E+ G+ ++ +HI ++ M K + Sbjct: 1268 MKDVLGIEAARYSIISEIGYTMAKHGLTVDPRHIMLLGDVMTCKGEV------------- 1314 Query: 1280 VEYSRVKIANRELEANGKVGATYSRDLLGITKASLA--TESFISAASFQETTRVLTEAAV 1337 LGIT+ +A +S ++ ASF++TT L AA Sbjct: 1315 ---------------------------LGITRFGVAKMKDSVLALASFEKTTDHLFNAAA 1347 Query: 1338 AGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQVTAEDASA 1391 +D + G+ E +++G+L P GT ++ RR E P+ D + Sbjct: 1348 RFAKDSIEGISECIVLGKLAPIGTNVF----QLIRRTEEEEEQKPKELLFDTPS 1397 >UniRef50_A8LC63 DNA-directed RNA polymerase subunit beta' n=26 Tax=Bacteria RepID=RPOC_FRASN Length = 1296 Score = 822 bits (2122), Expect = 0.0, Method: Composition-based stats. Identities = 446/986 (45%), Positives = 595/986 (60%), Gaps = 43/986 (4%) Query: 161 TEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKR 220 E + + + FG F+ MGAEA+Q L DL E E LRE + + K + L KR Sbjct: 237 DELLFRELRDRFGQYFEGGMGAEALQHRLADFDLAAEAESLRETIRSGKGQKKARAL-KR 295 Query: 221 IKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLK 280 +K++ AF+ + N P M+L +PV+PPDLRP+V LDGGRFATSDLNDLYRRVINRNNRLK Sbjct: 296 LKVVSAFLNTRNSPMGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLK 355 Query: 281 RLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQ 340 RLLDL AP+IIV NEKRMLQEAVDAL DNGRRGR +TG RPLKSL+DM+KGKQGRFRQ Sbjct: 356 RLLDLGAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQ 415 Query: 341 NLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKM 400 NLLGKRVDYSGRSVI VGP L+LHQCGLPK+MALELFKPF+ +L A IK+AK+M Sbjct: 416 NLLGKRVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRM 475 Query: 401 VEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNAD 460 VER VVWD+L+EVI EHPVLLNRAPTLHRLGIQAFEP L+EGKAIQ+HPLVC A+NAD Sbjct: 476 VERARPVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNAD 535 Query: 461 FDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNA 520 FDGDQMAVH+PL+ EAQ EAR LM+S+NNILSPA+G P+ +PS D+V G+++++R A Sbjct: 536 FDGDQMAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPSLDMVTGVFHLSRVSEGA 595 Query: 521 KGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANG-----ELVAKTSLKDTTVG 575 GEG + EA+ + + L AR++VR+ E A L +TT G Sbjct: 596 IGEGRFFSSVAEAQMAFDAREIHLQARIQVRLRESTPPAEWAPPADWLPGDPFTLETTFG 655 Query: 576 RAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARS 635 R +L +P+G P +N L KKA + ++N D + GF +A RS Sbjct: 656 RCLLNEALPEGYP--FINAQLNKKAQAAIVNDLAERYPKIQVAATLDALKSAGFYWATRS 713 Query: 636 GASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSK 695 G +V I+D+V P K +I+ E E +++QF G ++ ER ++++ IW A +++++ Sbjct: 714 GVTVAIEDVVAPPNKAQILDEYEQRAERVEKQFGRGFLSDEERRSELVQIWTEATNKIAE 773 Query: 696 AMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSII 755 AM N N +Y + +SGA G+ QIRQLAGMRGL++ P G II Sbjct: 774 AMEANF---------------PETNPVYTLVNSGAAGNMMQIRQLAGMRGLVSNPKGEII 818 Query: 756 ETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCG 815 PI ANFREGL V++YFISTHGARKGLADTAL+TA+SGYLTRRLVDV+QD++V E+DCG Sbjct: 819 PRPIKANFREGLTVVEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREEDCG 878 Query: 816 THEGIMMTPVIEGGDVK----EPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDL 871 T GI+ +G D R A D + +++VP + Sbjct: 879 TERGILTRIARKGPDGVLVRDRYAETSAYARSLASDAVD-AQGEVVVPAGADAGDVVIGQ 937 Query: 872 LEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLT 931 + E +++V+VRS ++C++ GVCAHCYGR LA G +++ GEA+G++AAQSIGEPGTQLT Sbjct: 938 IIEAGIESVRVRSALTCESRMGVCAHCYGRSLATGKLVDVGEAVGIVAAQSIGEPGTQLT 997 Query: 932 MRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSG---KLVITSRNTELKLIDEF 988 MRTFH GG A + +V + K+ ++ K+ T + ++ ++ + Sbjct: 998 MRTFHSGGVAGDDITQGLPRVVELFEARSPKGKAPISEVTGRVKIEETEKTFKVVIVPDD 1057 Query: 989 GRTKESYKVPYGAVLAKGDGEQVAGGETVAN--WDPHTMPVITEVSGFVRFTDMIDGQTI 1046 G + +Y V + L +GE+V G + + DPH + I + Sbjct: 1058 GSEEIAYPVSRRSRLRVREGERVEVGAQLIDGAVDPHEVLRILGPRQVQLHLVDQVQEVY 1117 Query: 1047 TRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAI 1106 Q + +++ + V G L+PG + F Sbjct: 1118 RSQGVSIHDKHIEIIIRQMLKRVN----------VLESGETTLLPGELVERARFEGENRR 1167 Query: 1107 VQLEDGVQISSGDTLARIPQESGGTK 1132 V G S+ L I + S T+ Sbjct: 1168 VVEIGGQPASARPVLMGITKASLATE 1193 Score = 315 bits (806), Expect = 9e-84, Method: Composition-based stats. Identities = 139/354 (39%), Positives = 195/354 (55%), Gaps = 5/354 (1%) Query: 1055 GLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQ 1114 +V+ E +R AL G G + + V + Sbjct: 929 DAGDVVIGQIIEAGIESVRVRSALTCESRMGVCAHCYGRSLATGKLVDVGEAVGIVAAQS 988 Query: 1115 I-SSGDTLARIPQESGGT--KDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKG 1171 I G L SGG DIT GLPRV +LFEAR PK A ++E++G V + K Sbjct: 989 IGEPGTQLTMRTFHSGGVAGDDITQGLPRVVELFEARSPKGKAPISEVTGRVKIEETEKT 1048 Query: 1172 KRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTR 1231 + +VI P DGS+ + + +L V EGERVE G + DG PH++LR+ G V Sbjct: 1049 FK-VVIVPDDGSEEIAYPVSRRSRLRVREGERVEVGAQLIDGAVDPHEVLRILGPRQVQL 1107 Query: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRE 1291 ++V++VQ+VYR QGV I+DKHIE+I+RQML++ ++ +G + L GE VE +R + NR Sbjct: 1108 HLVDQVQEVYRSQGVSIHDKHIEIIIRQMLKRVNVLESGETTLLPGELVERARFEGENRR 1167 Query: 1292 LEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 + G A+ L+GITKASLATES++SAASFQETTRVLT+AA+ + D L GLKENV Sbjct: 1168 VVEIGGQPASARPVLMGITKASLATESWLSAASFQETTRVLTDAAINARSDSLVGLKENV 1227 Query: 1352 IVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQVTAEDASASLA-ELLNAGLGGS 1404 I+G+LIPAGTG + +++ A V+ + AS+ AG G + Sbjct: 1228 IIGKLIPAGTGISRYRNIRVEPTDEARAAMYSVSGYEDGASVEYGAFGAGSGQA 1281 Score = 189 bits (479), Expect = 9e-46, Method: Composition-based stats. Identities = 96/223 (43%), Positives = 146/223 (65%), Gaps = 2/223 (0%) Query: 17 FDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYK 76 FD ++I LA+ D IR WSFGEVKKPETINYRT KPE+DGLFC +IFGP +D+EC CGKYK Sbjct: 7 FDELRIGLATADDIRQWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWECYCGKYK 66 Query: 77 RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIE 136 R++ +G+ICE+CGVEVT+ KVRRERMGHIELA+P HIW+ K +PSR+G LLD+ +D+E Sbjct: 67 RVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDLAPKDLE 126 Query: 137 RVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEA--IQALLKSMDL 194 +V+YF +Y++ + + + R E + ++ D+ +A + ++ L ++ Sbjct: 127 KVIYFAAYMITKVDIDSRHRDLPTLEARIGVEKQQLEDKKNADVETRQRKLEEDLAQLEA 186 Query: 195 EQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWM 237 E R ++ E+ R+ + + ++ + ++ + M Sbjct: 187 EGAKGDARRKVRESAEREMRQIRDRSQRKIDDLDRVFDRFKNM 229 >UniRef50_A4S3M0 DNA-directed RNA polymerase n=34 Tax=Eukaryota RepID=A4S3M0_OSTLU Length = 1646 Score = 821 bits (2121), Expect = 0.0, Method: Composition-based stats. Identities = 280/1578 (17%), Positives = 511/1578 (32%), Gaps = 272/1578 (17%) Query: 1 MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60 M +F + + +A++ + SPD IR S ++ ET +P+R GL R Sbjct: 1 MSVHDRFPHSTAELCRVNAVQFGVLSPDEIRKMSVCAIETSETY--EKGRPKRGGLSDPR 58 Query: 61 IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120 + RG +CE G + QT GH+ELA P H F+ + Sbjct: 59 MGT---------------MDRGAVCETDGCDSVQTP---GYFGHLELAKPVYHHGFINVV 100 Query: 121 PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKM 180 + V Y S +++ + Q++ + + L++ D K Sbjct: 101 LRILRC-----------VGYSSSQLLLHKDEDP-KFAQLMRIKNPKNRLKKLTDACKTKS 148 Query: 181 GAE-----AIQALLKSMDLEQECEQLREELNET-----------NSETKRKKLTKRIKLL 224 Q L+ M + E + EEL + K ++ Sbjct: 149 VCPYTGTAQPQYRLEGMKITAEFKHRDEELLPEGGERKVIVTAERALQILKAISDEDCRA 208 Query: 225 EAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLD 284 +P+W IL V+PV PP +RP V D + DL ++ N L+R Sbjct: 209 LGLDPEHARPDWFILQVMPVPPPPVRPSVSFDASTRSEDDLTVKLMEIVRTNKNLERQEQ 268 Query: 285 LAAPDIIVRNEKRMLQEAVDALLDNGRRGRA-ITGSNKRPLKSLADMIKGKQGRFRQNLL 343 AP ++ +LQ + +DN G + R +KS+++ +KGK GR R NL+ Sbjct: 269 NGAPQHVILEFTELLQYHIMTFMDNTVAGMPRALTRSGRSIKSISERLKGKAGRIRGNLM 328 Query: 344 GKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAA------ 397 GKRVD+S R+VIT P L L + G+P +AL + P + L ++ Sbjct: 329 GKRVDFSARTVITPDPNLMLDELGVPWSIALNMTYPETVTPYNIDRLQRLVENGPHPPPG 388 Query: 398 ---KKMVEREEAVV-----------------WDILDEVIREHPVLLNRAPTLHRLGIQAF 437 + + RE+ + + ++ VL NR P+LH++ I Sbjct: 389 ETGARYIIREDGQRLDLRFLKKSSEKRLEYGYKVERHMVNGDVVLFNRQPSLHKMSIMGH 448 Query: 438 EPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGE 497 ++ +L+ V YNADFDGD+M +H+P + E + E + LMM I+SP + Sbjct: 449 RVRIMPYSTFRLNLSVTPPYNADFDGDEMNMHLPQSYETRAEVKELMMVPKMIVSPQANK 508 Query: 498 PIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEK 557 P++ QD +LG +T+ + + G A +K + K Sbjct: 509 PVMAIVQDTLLGCRLITKRDTFITKDVFM---NIIMWLEDWDGKVPKPAILKPQPLWTGK 565 Query: 558 DANGELVAKTSLKDTTVG-----------RAILWMIVPKGLPYSIVNQALGKKAISKMLN 606 ++ K +L T+ I L + + +++ Sbjct: 566 QVFSMMLPKVNLLRTSAWAKDSDDMAFSVDDTGVRIEQGELLTGTLCKKTMGSGGGGLIH 625 Query: 607 TCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEK----KHEIISEAEAEVA 662 + G Q + G +VGI D + ++ + I++A+A+V Sbjct: 626 VTWEEWGPIAARGLISQTQTLVNYWVLHHGFTVGIADTIADDETMFSINNTITKAKADVK 685 Query: 663 EIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSI 722 E+ + Q+ + N ++KA + + + + N++ Sbjct: 686 EVIKLAQNNELELQPGMTMQQSFEQKVNQILNKARDN--------AGNSAQNSLMDTNNV 737 Query: 723 YMMADSGARGSAAQIRQLAGMRGLM--------------------AKPDGSIIETPITAN 762 MM +G++GS I Q+ G G + + Sbjct: 738 KMMVTAGSKGSFLNISQMIACVGQQNVEGKRIPYGFKGRTLPHFSKDDFGPESRGFVENS 797 Query: 763 FREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMM 822 + GL ++F G R+GL DTA+KT+ +GY+ RRLV +D+VV D + + Sbjct: 798 YLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDVVVKYDGTVRNSVGDV 857 Query: 823 TPVIEGGDVKEPLR------DRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENS 876 + G D + D + V D+ N L E+ L Sbjct: 858 IQFLYGEDGMDATMIESQSIDTLRFSVKEFAAKFHIDPDVPGFNNGWLSEEQASELA--- 914 Query: 877 VDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFH 936 KVR ++ + D R + + + + ++ Sbjct: 915 -HTAKVREILDAEWDRLQRDRVELRTICPTGDPHVHLPVNMK----------RILWNAQK 963 Query: 937 IGGAASRAAAESSIQVKNKGS---IKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKE 993 G + E ++V + L + V + V RN + Sbjct: 964 QYGLYRPDSGEEEVKVTHIIESVAELLPKLIVVPGTDPLSVEAQRNGTMLFFAHVRANLA 1023 Query: 994 SYKVPYGAVLA---------------------KGDGEQVAGGETVANWDPHTMPVITEVS 1032 + +V L GDG +++ + Sbjct: 1024 AKRVLKEHKLTRAGFDWVIGEIESRFKMALAPPGDGIGTVAAQSIGEPATQMTLNTFHFA 1083 Query: 1033 GFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPG 1092 G + + + + + + + + G R + + Sbjct: 1084 GVSAKNVTLGVPRLKEIINIAKSIKTPSLTIALKPELAGDRTRAKDCQASLEYTTLHSVA 1143 Query: 1093 TDMPAQYFLPGKAIVQLEDGVQISS------GDTLARIPQESGGTKDITGGLPRVADLFE 1146 Y V ED + + D ++ + L Sbjct: 1144 AVTEVHYDPDPTDTVIEEDREFVRAYYEMPDEDVDPSRMSPWLLRIELNREMMVDKKLLM 1203 Query: 1147 ARRPKEPAILAEISGIVSFGKETKGKRRLV----------ITPVDGSDPYEEM------- 1189 A I + +G +S +LV + D S E Sbjct: 1204 A--DVAERINEDFAGDLSCIFNDDNSEKLVLRIRIMNPEGVKYEDASTEDEVFLKRLETQ 1261 Query: 1190 ---------IPKWRQLNVFEGERVERGDVI------------SDGPE------------- 1215 IP +++ + E ++ ++G Sbjct: 1262 MLSNLALRGIPDIKKVFIREAKQNAINSKTELFEKTTEWMLDTEGVNLLEVMAHPDVDFT 1321 Query: 1216 -----APHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAG 1270 +++++ G+ AV ++ E++ V G +N +H+ ++V M Sbjct: 1322 RTTSNHLIEVIQVLGIEAVRNTLLRELRGVIEFDGSYVNYRHLAILVEVMT--------- 1372 Query: 1271 SSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLAT--ESFISAASFQET 1328 Y L+ IT+ + + SF+ET Sbjct: 1373 -------------------------------YRGHLMSITRHGINRVETGPLMRCSFEET 1401 Query: 1329 TRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAY-HQDRMRRRAAGEAPAAPQVTAE 1387 +L EA+ +RD + G EN+++G+ P GTG H + + A E + Sbjct: 1402 VDILMEASAFSERDNMTGPSENIMLGQFCPIGTGEFKLHLNDELLQDAVELELFGDGSRT 1461 Query: 1388 DASASLAELLNAGLGGSD 1405 + G G Sbjct: 1462 PGHGGMMTPGRDGTPGWG 1479 >UniRef50_B0EG66 DNA-directed RNA polymerase n=2 Tax=Entamoeba RepID=B0EG66_ENTDI Length = 1379 Score = 811 bits (2094), Expect = 0.0, Method: Composition-based stats. Identities = 283/1506 (18%), Positives = 510/1506 (33%), Gaps = 310/1506 (20%) Query: 2 KDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARI 61 K+ ++F+ + + I+ + S + + S EV + T KP +G+ R+ Sbjct: 19 KENIEFVGPSERPGKVCDIQFTMFSQEEMNRESEFEVTEHFLFQPNTRKPNPNGVLDRRL 78 Query: 62 FGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLP 121 + +CE CG + + I L P HI F + + Sbjct: 79 G---------------VCDSLSVCETCGKRIEECS---GHFAVINLELPVFHIGFFRPII 120 Query: 122 SRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMG 181 + + R + + Y+ M N + + + + +++ Sbjct: 121 QVLQCVCKNCNRILLTNEERDFYLRR---MRNKKTDTVARTYLVRALITQCRKHYNSCPH 177 Query: 182 AEAIQALLKS----------------------------------MDLEQECEQLREELNE 207 AI +K D+ + +E+L+ Sbjct: 178 CNAINGSIKKYGNLRLVHDKYHRDATITEMNEFYDGFEESIKLDKDINAFVDNAQEDLDP 237 Query: 208 TNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGR-FATSDLN 266 + + L + F PE MILT +PV P +RP V +DGG DL Sbjct: 238 RKVLSIFRSLIREDIETMDFDPDNAPPENMILTSVPVPPIAIRPSVAMDGGNASNEDDLT 297 Query: 267 DLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKS 326 + ++ N+R+K ++ A + L AV +++ G +PL+S Sbjct: 298 TQLKEIMECNDRIKEMIKRGASPYQYYDSWDQLTIAVSMFINSDLPGC---DDKGKPLRS 354 Query: 327 LADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLE 386 + +KGK GRFR NLLGKRVD+SGR+VI+ P L + Q G+PK MA++L P K Sbjct: 355 ICQRLKGKHGRFRGNLLGKRVDFSGRTVISPDPNLDIEQIGVPKLMAIKLTYPERVTKHN 414 Query: 387 LRGLATTIKAAKKMVEREEAVVW---------------------------DILDEVIREH 419 + L + + +++ + + Sbjct: 415 IDKLRQLVINGSNIYPGCNSIIGGTDGLRRSMCIKLEMREKFAKDLKIGDIVERHLEDND 474 Query: 420 PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLE 479 VL NR P+LHR+ I + ++ + ++ + VC YNADFDGD+M +HVP T EA+ E Sbjct: 475 IVLFNRQPSLHRISIMCHKAKILPWRTLRFNECVCTPYNADFDGDEMNLHVPQTEEARAE 534 Query: 480 ARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRS 539 LM S N+ +P G+ II +QD + Y +T + E M+ Sbjct: 535 CLMLMHSAKNLQTPRTGQMIIAETQDFLTTSYLLTSKDFVIEEEDMMQ-WACWFHNAGTE 593 Query: 540 GLASLHARVKVRITEYEKDANGELVAKTSLKDTT---------VGRAILWMIVPKGLPY- 589 A +K + K G + + + WM V G Sbjct: 594 IDLPTPAYLKPKKLWTGKQLYGLALKPNKHEGVNISLDVPSKLYSKEGKWMCVKDGWICF 653 Query: 590 ---SIVNQALGKKAIS-----KMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGI 641 ++ + K I + + R G + I + G S+GI Sbjct: 654 KNSQLLCGQIEKSIIGSGNKTGLFHLILRDYGTLESAKIMAHISRFCARFLGDYGFSIGI 713 Query: 642 DDMV----IPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAM 697 D+ + + K E++SE + + E ++SG + + + + + Sbjct: 714 SDVTPSADLTQMKEELVSEGYKKCDQFIEDYKSGK--------QEVQAGSTPEQTLEALL 765 Query: 698 MDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIET 757 + L E+ S NS +MA SG++GS I Q+ G G + + Sbjct: 766 NNELSEIRERAGKRCIEELKSDNSPLVMALSGSKGSVINISQMIACVGQQTVNGGRVSDG 825 Query: 758 PI--------------------TANFREGLNVLQYFISTHGARKGLADTALKTANSGYLT 797 I +F GLN ++F T G R+GL D+A+KTA +GY+ Sbjct: 826 FISRSLPHFALHSRTPQAKGFVKNSFFTGLNATEFFFHTMGGREGLVDSAVKTAETGYMQ 885 Query: 798 RRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADIL 857 RRL+ +DL V D + + G D +PL+ + + Sbjct: 886 RRLMKALEDLHVHYDGTVRSASLTVIEFKYGDDGLDPLKVESDKYPINLESVLSNLQQNQ 945 Query: 858 VPRNTLLHEQWCDLLEENSVDAVKVRS--------------------------------- 884 P + + + D + K+ S Sbjct: 946 KPDDEYITPENFDKEYNAIISQTKIVSELWKQQLETFLKEKKEEMIEIYNRYDQENAQHG 1005 Query: 885 -----VVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGG 939 + + +C R + G +G +A QS+GEP TQ+ ++TFH G Sbjct: 1006 LCGITIQTLKEFISICQKKGLRSVC-----EAGTPVGALAGQSMGEPSTQMVLKTFHFAG 1060 Query: 940 AASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPY 999 AS A + +K ++N+S K+ +L + S ++ Sbjct: 1061 VASMNIALGVPR-----------IKEIINASKKIQTPIVTAKLV----NSQDLTSARIVK 1105 Query: 1000 GAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSL 1059 G + + V ++ +D +TI + E T Sbjct: 1106 GRI----------EATRLKEIAKSIKIVFKPAEAYISVK--LDFETIKQLELECTIEKVQ 1153 Query: 1060 VVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGD 1119 VL + + +++ + + ++ Sbjct: 1154 DVLLNYRGLKLKDN-----QVIIRNKQKLRVYVDKASTSLLFALNSL------------- 1195 Query: 1120 TLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITP 1179 + + I G+ A++ + G+ E +++ TP Sbjct: 1196 -------RNQLLEVIVCGIENT----------GRAVINKNKGLFELLVEGSELLKVMGTP 1238 Query: 1180 VDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQD 1239 + + ++ G+ A I++E+++ Sbjct: 1239 GVIGEETT--------------------------SNHIAVVEKVLGIEAARSTIISEIKN 1272 Query: 1240 VYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVG 1299 V G+ I+ +H+ ++ M K I Sbjct: 1273 VMDAYGLSIDVRHLLLLSDLMTFKGVI--------------------------------- 1299 Query: 1300 ATYSRDLLGITKASLA--TESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLI 1357 LGIT+ ++ +S + ASF+ T L +AAV ++DE++G+ E++IVG + Sbjct: 1300 -------LGITRYGISKMKDSVFTFASFERTNDHLFDAAVHSRKDEIKGVSESIIVGNQV 1352 Query: 1358 PAGTGY 1363 GTG Sbjct: 1353 GLGTGL 1358 >UniRef50_A9B6J1 DNA-directed RNA polymerase subunit beta' n=3 Tax=Bacteria RepID=RPOC_HERA2 Length = 1543 Score = 810 bits (2092), Expect = 0.0, Method: Composition-based stats. Identities = 450/1090 (41%), Positives = 627/1090 (57%), Gaps = 105/1090 (9%) Query: 140 YFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECE 199 + + +++ +I++E +Y + F A MGA A++ ++ +DL++ Sbjct: 308 LNKEEKDKLDRLDDIQLHRIISENEYRILRDLAPYTFKADMGAGAVRDIVSMVDLDELSN 367 Query: 200 QLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGR 259 Q++ E+ + S +RKK TKR++++EAF +SGN+PEWMI+TVLPV+PPDLRP+V LDGGR Sbjct: 368 QMQAEVQSS-SGQRRKKATKRLRVVEAFRKSGNRPEWMIMTVLPVIPPDLRPMVQLDGGR 426 Query: 260 FATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGS 319 FATSDLNDLYRRVINRNNRLKRL++L AP+IIVRNEKRMLQEAVDAL+DNGRRGR ++G Sbjct: 427 FATSDLNDLYRRVINRNNRLKRLMELNAPEIIVRNEKRMLQEAVDALIDNGRRGRPVSGK 486 Query: 320 NKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKP 379 K LKSL+DM+KGKQGRFRQNLLGKRVDYSGRSVI VGP L+LHQCGLPKKMALELFKP Sbjct: 487 GKHRLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPTLQLHQCGLPKKMALELFKP 546 Query: 380 FIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEP 439 F+ +L +G A IK+AK+ VER VWD+L+EVI+++ VLLNRAP+LHRL IQAFE Sbjct: 547 FVMRRLVDKGFAHNIKSAKRFVERVRPEVWDVLEEVIKDYLVLLNRAPSLHRLSIQAFEA 606 Query: 440 VLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPI 499 LIEG AIQLHPLVCAA+NADFDGDQMAVHVPL+ +AQ EAR M+ST N+LSPA G+PI Sbjct: 607 KLIEGSAIQLHPLVCAAFNADFDGDQMAVHVPLSRKAQEEARRRMISTYNLLSPATGDPI 666 Query: 500 IVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEY---- 555 I PSQD+VLG +Y+T+ AKG G EA Y +G+ + A V + I +Y Sbjct: 667 ITPSQDIVLGCFYLTQVRPGAKGGGKRFGSIDEALLAYTNGVVHIQAPVWIVIEDYILPG 726 Query: 556 -----EKDANGELVAKTSLKDTTVGRAILWM-----------IVPKGLPYSIVNQALGKK 599 ++ + + V L +T+VGR I P N +GK Sbjct: 727 SDLREKELPSLDGVTPRVLIETSVGRIIFNNALRYQGEPKAGENGYRSPLHYRNFLVGKS 786 Query: 600 AISKMLNTCYRILGL-------------------------------KPTVIFADQIMYTG 628 + ++ CYR + T AD+I G Sbjct: 787 GLKALIADCYRFHSQRENIIADVYQELIERFGPETSEESLLRFYASERTARLADRIKALG 846 Query: 629 FAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAA 688 F +A G + D+ +P+ K I+ E +V +I++ + GL+T ERY +V+ W Sbjct: 847 FKHATLGGMTFSASDVEVPDTKDAIVQETYKKVQDIEKMQRRGLITDDERYREVVTAWLD 906 Query: 689 ANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMA 748 A +++ + +L F + MM+ SGARG+ QIRQ+AGMRGL Sbjct: 907 ATNQIKVEVQRSLN---------------PFGPVSMMSTSGARGNVEQIRQMAGMRGLTT 951 Query: 749 KPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLV 808 P G IIE PITANFREGL+V++YFISTHG RKGLADTAL+TA++GYLTRRLVDVAQD++ Sbjct: 952 DPTGRIIELPITANFREGLSVIEYFISTHGGRKGLADTALRTADAGYLTRRLVDVAQDVI 1011 Query: 809 VTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQW 868 VT +DCGT EG+ + D+ + DR++GRVT V P T +++ ++ + E Sbjct: 1012 VTIEDCGTTEGMWIRV---SRDILASVEDRIVGRVTVAPVTNPVTGEVIFDTDSEILEDD 1068 Query: 869 CDLLEENSVDA---------VKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIA 919 + + VRSV++C+ D+G+C CYGR+LA G ++ GEA+G+IA Sbjct: 1069 GKHIANVLKSLDKEAQAEFGIYVRSVLTCNADYGICRKCYGRNLATGKMVEIGEAVGIIA 1128 Query: 920 AQSIGEPGTQLTMRTFHIGGAASR-AAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSR 978 AQSIGEPGTQLT+RTFH GG A+ + +V+ ++ K+V+ V R Sbjct: 1129 AQSIGEPGTQLTLRTFHTGGVATDTDITQGLPRVQEIFEARIPKGKAVLAQIAGRVQIVR 1188 Query: 979 NTE----LKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTM---PVITEV 1031 E L+++ E T E +P + +G+ V G +A + P++ + Sbjct: 1189 EEEGIRRLRIVSEEVYTDEQM-LPKDYRVVVKNGDAVEIGNLLAESNVDGDGRAPLVAGL 1247 Query: 1032 SGFVRFTD--MIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVL 1089 +G V D ++ + +E+ ++ + + + G+ + + Sbjct: 1248 AGNVYVDDDRLVIQAKDIEEHEEVIAHAARLRVKDGDLVQVGQQMTEG---SSDPQEMLQ 1304 Query: 1090 IPGTDMPAQYFLPGKAIVQLEDGVQISSGDT-------LARIPQESGGTKDITGGLPRVA 1142 + G + +Y V GV I+ L R+ E G ++ G Sbjct: 1305 LRGREAVQEYLTNEAQKVYRSQGVGINDKHIEVIVRQMLRRVRIEEPGDTELLPG----- 1359 Query: 1143 DLFEARRPKE 1152 +L E Sbjct: 1360 ELVELHELNR 1369 Score = 274 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 141/452 (31%), Positives = 199/452 (44%), Gaps = 71/452 (15%) Query: 1015 ETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVL--DSAERTAGGK 1072 + +A+ + + +T T + T + ++ + V+ D + G Sbjct: 1030 DILASVEDRIVGRVTVAPVTNPVTGEVIFDTDSEILEDDGKHIANVLKSLDKEAQAEFGI 1089 Query: 1073 DLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDTLARIPQESGGT 1131 +R L G G ++ + V + I G L +GG Sbjct: 1090 YVRSVLTCNADYGICRKCYGRNLATGKMVEIGEAVGIIAAQSIGEPGTQLTLRTFHTGGV 1149 Query: 1132 K---DITGGLPRVADLFEARRPKE----------PAILAEISGIVSFGKETKGKR----- 1173 DIT GLPRV ++FEAR PK I+ E GI ++ Sbjct: 1150 ATDTDITQGLPRVQEIFEARIPKGKAVLAQIAGRVQIVREEEGIRRLRIVSEEVYTDEQM 1209 Query: 1174 ----------------------------------------------RLVITPVDGSDPYE 1187 ++ + +E Sbjct: 1210 LPKDYRVVVKNGDAVEIGNLLAESNVDGDGRAPLVAGLAGNVYVDDDRLVIQAKDIEEHE 1269 Query: 1188 EMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVK 1247 E+I +L V +G+ V+ G +++G P ++L+LRG AV Y+ NE Q VYR QGV Sbjct: 1270 EVIAHAARLRVKDGDLVQVGQQMTEGSSDPQEMLQLRGREAVQEYLTNEAQKVYRSQGVG 1329 Query: 1248 INDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLL 1307 INDKHIEVIVRQMLR+ I G ++ L GE VE + N + + G A LL Sbjct: 1330 INDKHIEVIVRQMLRRVRIEEPGDTELLPGELVELHELNRINASIVSQGGDPALAVPVLL 1389 Query: 1308 GITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQ 1367 GITKASL+T+SF+SAASFQETTRVLTEAAV GK D LRGLKENV++G+LIPAGTG Sbjct: 1390 GITKASLSTDSFLSAASFQETTRVLTEAAVNGKIDYLRGLKENVVIGKLIPAGTGM---- 1445 Query: 1368 DRMRRRAAGEAPAAPQVTAEDASASLAELLNA 1399 ++ R+ A A Q+T+ A + A Sbjct: 1446 EQRRKLAEEAALRVAQITSTPADREVPAATPA 1477 Score = 189 bits (479), Expect = 8e-46, Method: Composition-based stats. Identities = 93/174 (53%), Positives = 132/174 (75%) Query: 13 KTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLC 72 + EF+AI+I+LASP+ I SWS GEV KPETINYRT +PERDGLFC +IFGP +D+EC C Sbjct: 3 EINEFNAIRISLASPEDILSWSHGEVTKPETINYRTLRPERDGLFCEKIFGPTRDWECYC 62 Query: 73 GKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPL 132 GKYKR++++G++C+KCGVEVT++KVRR+RMGHI+LASP +HIWF+K PSR+GLLLD+ Sbjct: 63 GKYKRVRYKGIVCDKCGVEVTRSKVRRDRMGHIKLASPVSHIWFVKGTPSRLGLLLDISP 122 Query: 133 RDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQ 186 R++ERVLYF SY++ + L + + + ++ ++ + G +A + Sbjct: 123 RNLERVLYFASYIITDVDDLALGNVREQMKTDFGVRRKDLEEKIIEQRGEKATR 176 >UniRef50_Q7X881 DNA-directed RNA polymerase n=6 Tax=Magnoliophyta RepID=Q7X881_ORYSJ Length = 1383 Score = 810 bits (2092), Expect = 0.0, Method: Composition-based stats. Identities = 286/1529 (18%), Positives = 506/1529 (33%), Gaps = 309/1529 (20%) Query: 4 LLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFG 63 + T +I+ ++ S + +R + +V N+ KP +GL R+ Sbjct: 11 TKEPFIEDVGTRRIKSIRFSMFSGNEVRQSAEVQVWNSRIYNHEM-KPVPNGLLDTRMGA 69 Query: 64 PVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSR 123 K E C C + G+++LA P ++ F + Sbjct: 70 ANKLGE---------------CSTCHGSFAECP---GHFGYLKLALPVFNVGFFNCILDV 111 Query: 124 IGLLLDMPLRDI--ERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDE-FDAKM 180 + + R + E+ + L++ I+ + + L F + Sbjct: 112 LKCICKSCSRVLLMEKDRLEFLKKMRNPKADPLQKSAIMKKVRDKCKLSRCPWCGFINGV 171 Query: 181 GAEAIQALLKSMDLEQECEQLREELNETNSETK-------------------RKKLTKRI 221 + L+ D + + EEL + S K K++T Sbjct: 172 AKKGRAGLIILHDCSKTLDGSTEELRDALSHKKEKLSISAVRMLDPAIVLSLFKRMTDED 231 Query: 222 KLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRF-ATSDLNDLYRRVINRNNRLK 280 L G++PE +I+T + V P +RP V + GGR + + + + N N+ LK Sbjct: 232 CELLNL---GDRPEKLIVTEIAVPPVPIRPSVFVAGGRMSNEDSITVILKSIANTNSILK 288 Query: 281 RLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQ 340 L + + + LQ V +++ + + L +KGK GRFR Sbjct: 289 ENLQTGGQFMKCFDCWQHLQLQVVEYINSDAPSLPESQH-----RGLVQRLKGKTGRFRG 343 Query: 341 NLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKM 400 NL GKR +Y+GR+VI+ P LR+ + +P MA L P + L I+ Sbjct: 344 NLSGKRTEYTGRTVISPDPNLRITEVAIPILMARVLTYPERVSYYNIEKLRQCIRNGPHK 403 Query: 401 VEREEAVV------------------------WDILDEVIREHPVLLNRAPTLHRLGIQA 436 ++ + + VL NR P+LHR+ I + Sbjct: 404 HPGANFIIQPDGTKLHLKYCDRRIAARDLKYGCVVERHLEDGDIVLFNRQPSLHRMSIMS 463 Query: 437 FEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANG 496 ++ + ++ + VC YNADFDGD+M +HVP T EA+ EA LM NN+ +P NG Sbjct: 464 HRARIMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNG 523 Query: 497 EPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYE 556 E ++ +QD + + +TR L + A +K Sbjct: 524 EILVASTQDFLTSSFLVTRKDNFYDRSSFSLLCSY-LGDAMENIDLPTPALIKPIELWTG 582 Query: 557 KDANGELVAKTSLKDTTVGRAILWMI--------------VPKGLPYSIVN-----QALG 597 K LV + + + I P N +G Sbjct: 583 KQLFSVLVRPNACTKVFLNLTVKEKIYKTPKGSTLEPEAMCPNDGFVYFRNSELLSGQVG 642 Query: 598 KKAIS-----KMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMV----IPE 648 K + M +T R +++ + G S+G+DD+ + + Sbjct: 643 KATLGNGNKDGMFSTLVRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEHLNQ 702 Query: 649 KKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVIN 708 +K I + ++ + G + N A + +++ L Sbjct: 703 EKKMKIDGGYKDCHDLIASYSKGALRLQPGCN--------AAQTLEQSITRVLNEIREEA 754 Query: 709 RDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAK-----PDGSI--------- 754 NS +M+ G++GS I Q+ G + P+G I Sbjct: 755 GKVCMNTLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRTLPHFPI 814 Query: 755 ------IETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLV 808 + + +F GL ++F T G R+GL DTA+KTA +GY++RRL+ +DL Sbjct: 815 NSKTPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLS 874 Query: 809 VTEDDCGTHEGIMMTPVIEGGDVKEPLRDR-VLGRVTAEDV-LKPGTADILVPRNTLLHE 866 V D + + + G D +P + G+ D A L Sbjct: 875 VFYDQTVRNASGGIVQFLYGDDGMDPAKMEGKDGKPLNLDQLFMKVMATCPQRGQNTLSP 934 Query: 867 QWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRD------------------------ 902 + + + S C F + D Sbjct: 935 GEILQILNDKLSEHDASSDDGCSEKFKQLLTYFLEDRIKLLKSTRRALLLDEDHVGERHS 994 Query: 903 ---------------------------LARGHIINKGEAIGVIAAQSIGEPGTQLTMRTF 935 I G +IG I AQSIGEPGTQ+T++TF Sbjct: 995 SFEESIAANISGISVKQLQVFLDTCLSRYHLKKIEAGASIGAIGAQSIGEPGTQMTLKTF 1054 Query: 936 HIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESY 995 H G AS + +K ++N++ K+ EL + S Sbjct: 1055 HFAGVASMNVTLGVPR-----------IKEIINAAKKISTPIITAELL----SEKDVLSA 1099 Query: 996 KVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTG 1055 ++ G++ GE + V + V ++ Sbjct: 1100 RIVKGSMEKAVLGEVAEAIKIVLKSSQPNLVV----------------------KLDMQR 1137 Query: 1056 LSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI 1115 + +L + SA+ P +K+ + K+ +++ Sbjct: 1138 IEALHMGISADSVQLSILNHPKIKLKSEHVRVI--------------DKSKLRIYPAGID 1183 Query: 1116 SSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRL 1175 S +S K I G+P V A+++E Sbjct: 1184 KSKLLYELHHLKSMLPKVIVKGIPTVER----------AVISE----------------- 1216 Query: 1176 VITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVN 1235 T + Y+ ++ L V V D + ++ R G+ A R I++ Sbjct: 1217 --TGEENDKRYKLLVEGTNLLAVMGTPGV---DAMKTKSNHIMEVNRTLGIEAARRSIID 1271 Query: 1236 EVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEAN 1295 E+Q + G+ I+ +H+ ++ M Sbjct: 1272 EIQYTMKSHGMNIDSRHMMLLADLMT---------------------------------- 1297 Query: 1296 GKVGATYSRDLLGITKASLA--TESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIV 1353 Y ++LGIT+ +A S + ASF++T L A+ +G+ D++ G+ E +I+ Sbjct: 1298 ------YKGEILGITRYGIAKMKSSVLMLASFEKTAEHLFNASYSGREDQIEGVSECIIM 1351 Query: 1354 GRLIPAGTGYAYHQDRMRRRAAGEAPAAP 1382 G + GTG + R+ + P Sbjct: 1352 GIPMQLGTGILKVRQRLDHLPEFKYQPDP 1380 >UniRef50_UPI00017927B1 PREDICTED: similar to AGAP004703-PA n=1 Tax=Acyrthosiphon pisum RepID=UPI00017927B1 Length = 1355 Score = 809 bits (2089), Expect = 0.0, Method: Composition-based stats. Identities = 277/1473 (18%), Positives = 493/1473 (33%), Gaps = 268/1473 (18%) Query: 4 LLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETI----NYRTFKPERDGLFCA 59 + + + + I + +P I+ S + N + P G+ Sbjct: 2 VKEQYRDTDGSRIISKISFTVDNPQDIQRKSHLCINTRNLYAINNNNASRTPHPYGVLDH 61 Query: 60 RIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKS 119 ++ + + C C + +G I+L P H+ F S Sbjct: 62 KLG---------------VNQKDATCMTCNKGLNDCP---GHLGFIDLQLPVFHVGFFSS 103 Query: 120 LPSRIGLLLDMP----LRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDE 175 + + + + P + E F + +T R+++ E + Sbjct: 104 VITILQTICKNPFCAKVLLNEEDRMFFYTKLRNKNLTYTMRKKVFKEVHAKAKKVQICPF 163 Query: 176 FD---------------------AKMGAEAIQALLKSMDLEQECEQLR-----EELNETN 209 K G EA AL + +E E +R E LN Sbjct: 164 CSDIVGQVKKNGILKISYDRYRYKKPGTEAESALNDVVKYNKEVESMRNYLFNENLNPQE 223 Query: 210 SETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLD-GGRFATSDLNDL 268 + +L + P W+++T + V P +RP D DL Sbjct: 224 VLRLLLSIPYEDIILLGMNPEVSNPGWLLMTRMLVPPNCIRPSAVSDIRSGTNEDDLTLK 283 Query: 269 YRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLA 328 V+ N+ + + A ++ + LQ +++ G + T K+ + Sbjct: 284 LSEVLFINDVIVKHKQSGAKPQLLHEDWEYLQLHCALYINSDLSGVSRTMMPKKIARGCV 343 Query: 329 DMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELR 388 +KGK GRFR NL GKRVD++ RSVI+ P LR+ + G+P +MA L P + Sbjct: 344 QRLKGKHGRFRGNLSGKRVDFTARSVISPDPNLRIEEVGVPVRMAKILTYPQKVCPANIE 403 Query: 389 GLATTIKAA-----------------KKMVE-------REEAVVWD-ILDEVIREHPVLL 423 + + KK + ++ + D + + VL Sbjct: 404 LMRKLVMNGPEIHPGANFVELQGSKLKKYLRFGNRPAIAKDLKIGDIVERHLSDGDIVLF 463 Query: 424 NRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARAL 483 NR P+LHRL I ++E ++ + VC YNADFDGD+M +H+P T EA+ EA L Sbjct: 464 NRQPSLHRLSIMCHRAKVLEHNTLRFNECVCTPYNADFDGDEMNLHLPQTEEARAEAALL 523 Query: 484 MMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLAS 543 M++ +N+++P NG+ +I +QD + G Y +T + L + Sbjct: 524 MINKSNLVTPRNGDILIAATQDFITGAYLLTHKNTFLN----QRDSSRLIGWLMSGDDIN 579 Query: 544 LH-ARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPY------------- 589 + + I + K G+ + ++ + + Sbjct: 580 IDLTLPRPAILKPHKLWTGKQILSIIMRPSKKCLVKANLRCKGKSYTRDEEFCFKDSYVY 639 Query: 590 ----SIVNQALGKKAISK-----MLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVG 640 ++ + K + + G ++ + G S+G Sbjct: 640 IKNSELLAGTMDKATLGSGSKSNIFYVLLADWGSDVCCKVMWRLTRLTSYFLMLRGFSIG 699 Query: 641 IDDMVIPE----KKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKA 696 I D+ + K+E++ A E S + N ++ + Sbjct: 700 IGDVTPSDDLLQSKNELVINGNALCEENIRLRNSKELKCQPGCNM--------DETLEAN 751 Query: 697 MMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMA-----KPD 751 ++ L + N +MA SG++GS I Q+ G A PD Sbjct: 752 ILKQLSGIRDSVGKACLLELHFTNGPLVMALSGSKGSNINISQMIACVGQQALSGHRVPD 811 Query: 752 GSIIE---------------TPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYL 796 G + +F GL ++F T G R+GL DTA+KTA +GY+ Sbjct: 812 GFESRSLPHFKRFSKTPEAKGFVENSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYM 871 Query: 797 TRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLG-RVTAEDVLKPGTAD 855 RRLV +DL V D+ + + GGD +P G V + V TA+ Sbjct: 872 QRRLVKSLEDLCVHYDNTVRNAFGDVIQFEFGGDSLDPTYTEGDGVPVDFKRVYFNVTAN 931 Query: 856 ILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAI 915 + + V ++ + + C Y +I G + Sbjct: 932 YPCTDESNNMAELRKKWLNLEVSKIQRITSTQLIKFYVTCLTKY-----MAAVIEPGTPV 986 Query: 916 GVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVI 975 G IAAQSIGEPGTQ+T++TFH G AS + + +K ++NSS + Sbjct: 987 GAIAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPR-----------IKEIINSSKNIST 1035 Query: 976 TSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFV 1035 L E + KE ++ + T+ V+ + Sbjct: 1036 PIITAYL----ENDKDKEFARIVKARIEQ----------TTLTEVCSFIDVVLDSAECY- 1080 Query: 1036 RFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDM 1095 ++ + R ++ + DS T + I + + Sbjct: 1081 ----LLIHIDMNRIKLLQLEVTIETIRDSILSTPRIGIKANQVNIDNESCVSIS------ 1130 Query: 1096 PAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAI 1155 LP K L + + I K + G+ V+ A+ Sbjct: 1131 -----LPSKGTQSLNNWINI----------YSQNLQKVVIKGISAVSR----------AV 1165 Query: 1156 LAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPE 1215 + E + + +L++ + + ++ +V Sbjct: 1166 IHEED------DNGEIRYKLLVEGDNLREVMATPGVIGKRCTSNNTFQV----------- 1208 Query: 1216 APHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFL 1275 G+ A I++E+ V G+ I+ +H +I M Sbjct: 1209 -----WNALGIEASRATIISEIDSVMGNHGISIDPRHPMLIADLMTS------------- 1250 Query: 1276 EGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLA--TESFISAASFQETTRVLT 1333 +LLGIT+ L+ ES ++ ASF++T+ L Sbjct: 1251 ---------------------------RGELLGITRFGLSKMKESVLNLASFEKTSDHLF 1283 Query: 1334 EAAVAGKRDELRGLKENVIVGRLIPAGTGYAYH 1366 +AA G+ D + G+ E++I+G I GTG+ Sbjct: 1284 DAAYYGQTDTINGVSESIIMGIPINLGTGFFKL 1316 >UniRef50_Q0U9K8 DNA-directed RNA polymerase n=242 Tax=root RepID=Q0U9K8_PHANO Length = 1720 Score = 808 bits (2087), Expect = 0.0, Method: Composition-based stats. Identities = 275/1544 (17%), Positives = 518/1544 (33%), Gaps = 269/1544 (17%) Query: 8 LKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKD 67 ++++ I+ L SP+ I++ S ++ PET++ KP GL R+ + Sbjct: 7 VQSKCPLRTIKEIQFGLLSPEEIKAMSVCQIMFPETMDESNTKPREHGLNDPRLGTIDRM 66 Query: 68 YECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSR---I 124 Y C C ++ +V GHIELA+P H++ + + I Sbjct: 67 YS---------------CATCKEDI---QVCPGHFGHIELATPVFHVFMVLTALGFVVKI 108 Query: 125 GLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEA 184 +L+ + + ++ + + ++ + + + G E Sbjct: 109 KKILETVCHNCGLITADYNHPDWANAIRTKDAKKRFDKIW---RMSRTKKNCEQDTGEED 165 Query: 185 IQAL-------LKSMDLEQECEQ---------------------LREELNETNSETKRKK 216 + + + + ++ +E L ++ K Sbjct: 166 PKKAPKIPHGGCGNTNPDTIRKEGVKLTATYKPKKGEDSDGQGDRKEVLTPQHALNVFKL 225 Query: 217 LTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDG---GRFATSDLNDLYRRVI 273 L+ L +PEWMI+TVLPV PP +RP + +DG G DL +I Sbjct: 226 LSDNTLALLGLNADYARPEWMIMTVLPVPPPPVRPSISVDGTGQGMRGEDDLTYKLGDII 285 Query: 274 NRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAI-TGSNKRPLKSLADMIK 332 N R++ + AP I+ + ++Q V +DN G + RPLK++ +K Sbjct: 286 RANQRVQECISEGAPQHILNEFEALVQYHVATYMDNDANGIPPSNQKSGRPLKTIRGRLK 345 Query: 333 GKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLAT 392 GK+GR R NL+GKRVD+S R+VIT P L L Q G+P+ +A L P + K + L + Sbjct: 346 GKEGRLRGNLMGKRVDFSARTVITGDPNLSLDQVGVPRSIARTLTYPEVVTKFNISKLTS 405 Query: 393 TIKAAKKMVEREEAVV-----------------------WDILDEVIREHPVLLNRAPTL 429 ++ V+ W + + + ++ NR P+L Sbjct: 406 LVRNGPNQHPGANYVIKSDGVRLDLKHNKNLDDLRLQYGWKVERHIDDDDVIIFNRQPSL 465 Query: 430 HRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNN 489 H+ + ++ +++ V + YNADFDGD+M +HVP + E + E + L M Sbjct: 466 HKESMMGHRVKVMPYSTFRMNLSVTSPYNADFDGDEMNLHVPQSDETRAEIQNLCMVPKQ 525 Query: 490 ILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVK 549 I+SP +P++ QD +LG+Y M+R E ++ + G+ A +K Sbjct: 526 IVSPQKNQPLMGIVQDTLLGVYKMSRRDNFLPIEQVMCIMMWVPD---WDGIVPEPAILK 582 Query: 550 VRITEYEKDANGELVAK----------TSLKDTTVGRAILWMIVPKGLPYSIVNQALGKK 599 R K K + + +I L V + + Sbjct: 583 PRPLWTGKQIISMAFPKEVNIWRSDGDSKPSPWNDFQDKSLLIKGGELLLGSVTKKIVGA 642 Query: 600 AISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEII----S 655 +++ + L V F + + G S+GI D V + I + Sbjct: 643 TAGGVIHIIFNELSSGEAVKFFNSCQRIVNWWLLHHGFSLGIGDTVPDPETAAKIASEVA 702 Query: 656 EAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEK 715 +A+A+V EI + + + L + Sbjct: 703 KAKAKVEEIVLEATRDELEPLPGM--------TIRGTFESKVQKYLNEGREGGGTAAQNS 754 Query: 716 QVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSI--------------------I 755 FN++ SG++GS I Q+ + G A I Sbjct: 755 LKDFNNVVQTVISGSKGSTVNISQMVSLVGQQAVEGQRIPFGFKYRTLPHFTKDDYSPES 814 Query: 756 ETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCG 815 + ++ GL ++F R+GL DTA+KTA +GY+ RRLV +D++V D Sbjct: 815 RGFVENSYLRGLTPAEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTV 874 Query: 816 THEGIMMTPVIEGGDVKE--PLRDRVLGRVTAEDVLKPGTAD--------------ILVP 859 + + I G D + + ++ + +T + L Sbjct: 875 RNSLGDIIEFIYGEDGLDGGFIENQKIDMITLSEAKFEKVFKVDVLGTDAPQIPTSKLAG 934 Query: 860 RNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEA-IGVI 918 N + + D +K+ + + L +I + G+ Sbjct: 935 ANEFQGDVDIQRHLDEEFDQIKIDREYLRTVIGQDDSQQFQLPLNIARMIESAQMRFGIK 994 Query: 919 AAQSIGE-PGTQL--TMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVI 975 Q++ + T++ +R R S++ + + + ++V+ Sbjct: 995 KGQNVSDLHPTEVVCQVRDLLDSLVVIRGNDPLSVEAQASATYLFKCHLRSRLAFKRVVV 1054 Query: 976 TSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQ--VAGGETVANWDPHTMPVITEVSG 1033 ++ L G ++ + A GE V +++ +G Sbjct: 1055 EESLSKKALDYILGELQDRFL-----KAAVAPGEMVGVLAAQSIGEPATQMTLNTFHFAG 1109 Query: 1034 FVR----------------FTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPA 1077 ++ + RQTD+ G VL S + L + Sbjct: 1110 VSSKNVTLGVPRLKEILNIAANIKTPSMLVRQTDKNAGQQEAKVLRSRIELTTLRSLTQS 1169 Query: 1078 LKIVDAQGN--DVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDIT 1135 +++ ++ DM YF+ + +E + + R+ + D Sbjct: 1170 VELYYDPEIQATLVESDQDMVESYFIVPEENEVIESQSK-----WVLRVILDRKKLLDKN 1224 Query: 1136 GGLPRV----------------------ADLFEAR------------------------- 1148 G+ V + R Sbjct: 1225 IGISEVAGTIKREFSPNLAVIFSDENADEQVMRVRFIWDGNLKQDDEDEDERDERWMRKL 1284 Query: 1149 --RPKEPAILAEISGIVSFGKETKG----KRRLVITPVDGSDPYEEMIPKWRQLNVFEGE 1202 + +L + G+ + +E + ++ E Sbjct: 1285 ETHLLDGVVLRGLKGVERAFIREDNVVVMNEDRSLVLSKSDPRCKEWVLDTTGTSLAEVL 1344 Query: 1203 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR 1262 VE D + +IL + G+ A +++E+ V G +N +H+ ++V M + Sbjct: 1345 AVEGVDGTKTYSNSFIEILGVLGIEAARAGLLHELGMVLSFDGSYVNHRHMALLVDIMTQ 1404 Query: 1263 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLAT--ESFI 1320 L+ IT+ + + Sbjct: 1405 ----------------------------------------RGMLMAITRHGINRNDTGAL 1424 Query: 1321 SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 SF+ET +L EAA G+ D+ RG+ EN+++G+L P GTG Sbjct: 1425 MRCSFEETVEILLEAAGFGELDDCRGVSENIMLGQLAPMGTGEF 1468 >UniRef50_UPI0001C30E3D DNA-directed RNA polymerase, beta'''' subunit n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C30E3D Length = 1355 Score = 808 bits (2086), Expect = 0.0, Method: Composition-based stats. Identities = 452/988 (45%), Positives = 593/988 (60%), Gaps = 68/988 (6%) Query: 172 FGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSG 231 FG+ F MGAE+++ LL+ +DL+ E E+L+ EL +T K+ + KR+K++ AF+QSG Sbjct: 280 FGEYFRGGMGAESVRDLLEQVDLDAEREELQ-ELVKTAKGQKQSRSVKRLKVVSAFIQSG 338 Query: 232 NKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDII 291 N+PE MIL +PV+PP+LRP+V LDGGRFATSDLNDLYRRVINRNNRLKRLLDL AP+II Sbjct: 339 NRPEMMILEAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPEII 398 Query: 292 VRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSG 351 V NEKRMLQEAVDAL DNGRRGR +TG RPLKSL+DM+KGKQGRFRQNLLGKRVDYSG Sbjct: 399 VNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSG 458 Query: 352 RSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDI 411 RSVI GP L+LHQCGLPK MALELFKPFI +L R A IKAAKKMV+ VWD+ Sbjct: 459 RSVIVSGPSLKLHQCGLPKLMALELFKPFIMARLVERKAAQNIKAAKKMVDSMIPEVWDV 518 Query: 412 LDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVP 471 L+EVI EHPVLLNRAPTLHRLGIQAFEP+L+EGKAIQ+HPLVC A+NADFDGDQMAVH+P Sbjct: 519 LEEVIHEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQVHPLVCHAFNADFDGDQMAVHLP 578 Query: 472 LTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT---RDCVNAK------- 521 L+ EAQ EAR LM+S NNILSPA+G P+ P+QD++LG YY+T AK Sbjct: 579 LSAEAQAEARILMLSANNILSPAHGAPLATPTQDMILGAYYLTYGPEADELAKVDPARAA 638 Query: 522 GEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWM 581 V +EAE Y G+ LH + R + TTVGR I Sbjct: 639 KRPHVYRTAQEAEWSYEHGVTRLHDLAEFRPAG----------RQGGHILTTVGRIIYND 688 Query: 582 IVPKGLP-----------YSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFA 630 + + + Y VN+++ K+ ++ ++ + G D GF Sbjct: 689 KIERAIRETLGADYDPASYEFVNRSMKKRDTTQFVDDLVQAYGAATISQVLDAFKDLGFR 748 Query: 631 YAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAAN 690 YA ++G +V +D+VIP +K EI+ + E EVAEIQ+Q+ GL+T ER + V+D W AA Sbjct: 749 YATQAGITVSKNDVVIPPEKGEILGKYEGEVAEIQDQYDMGLITEEERKDAVVDRWNAAT 808 Query: 691 DRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKP 750 D V++AM + N I+MMA+SGARGS QIRQLAGMRGLMA P Sbjct: 809 DEVAEAMEQHFNE---------------LNPIFMMANSGARGSFKQIRQLAGMRGLMANP 853 Query: 751 DGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVT 810 G IIE P+ ANF EGL+V++YF STHGARKGLADTAL+TA+SGYLTRRLVDVAQD+++ Sbjct: 854 KGEIIERPVKANFMEGLDVIEYFTSTHGARKGLADTALRTADSGYLTRRLVDVAQDVIIR 913 Query: 811 EDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCD 870 ++DCG + + + GG+ D V+GRV A D+ P + ++ + + Sbjct: 914 QEDCGAEQYVELDLYKAGGEP----NDNVVGRVAALDLG-PRKSVVVERGIEMSRADFAA 968 Query: 871 LLEENSVD--AVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGT 928 LLE D + VRSV+ C+ GVC CYGR +A G+ G+A+G+IAAQSIGEPGT Sbjct: 969 LLEAYGEDNVKIPVRSVLKCEAPTGVCQACYGRAMATGNTAQIGDAVGIIAAQSIGEPGT 1028 Query: 929 QLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTE--LKLID 986 QLTMRTFH GG A +V + + + G +V + +I Sbjct: 1029 QLTMRTFHTGGVAGADITHGLPRVVELFEARKPKGLAKIAEVGGVVEIEETDKALTVVIT 1088 Query: 987 EFGRTKESYKVPYGAVLAKGDGEQVAGGETVAN--WDPHTMPVITEVSGFVRFTDMIDGQ 1044 + G + + P L G++V G+ + PH + I + + + Sbjct: 1089 DDGGDEHRHTFPRRTRLHVERGDKVEPGKQLNEGSLYPHELLAIRGRTETELYLVKEVQE 1148 Query: 1045 TITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGK 1104 Q ++ +++ + VD +G+ L+PG + + Sbjct: 1149 VYKSQGVDINDKHIELIVRQMLKKVR----------VDQKGDTDLLPGVFVDRHDYARIN 1198 Query: 1105 AIVQLEDGVQISSGDTLARIPQESGGTK 1132 +V G + + + I + S T Sbjct: 1199 QVVIDNGGEPAQAEEIILGITKASLNTD 1226 Score = 306 bits (782), Expect = 6e-81, Method: Composition-based stats. Identities = 135/363 (37%), Positives = 186/363 (51%), Gaps = 6/363 (1%) Query: 1045 TITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGK 1104 + + E++ +L++ +R LK G G M Sbjct: 953 VVVERGIEMSRADFAALLEAYGEDNVKIPVRSVLKCEAPTGVCQACYGRAMATGNTAQIG 1012 Query: 1105 AIVQLEDGVQI-SSGDTLARIPQESGGTK--DITGGLPRVADLFEARRPKEPAILAEISG 1161 V + I G L +GG DIT GLPRV +LFEAR+PK A +AE+ G Sbjct: 1013 DAVGIIAAQSIGEPGTQLTMRTFHTGGVAGADITHGLPRVVELFEARKPKGLAKIAEVGG 1072 Query: 1162 IVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDIL 1221 +V + K V+ DG D + P+ +L+V G++VE G +++G PH++L Sbjct: 1073 VVEIEETDKALT--VVITDDGGDEHRHTFPRRTRLHVERGDKVEPGKQLNEGSLYPHELL 1130 Query: 1222 RLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVE 1281 +RG Y+V EVQ+VY+ QGV INDKHIE+IVRQML+K + G +D L G V+ Sbjct: 1131 AIRGRTETELYLVKEVQEVYKSQGVDINDKHIELIVRQMLKKVRVDQKGDTDLLPGVFVD 1190 Query: 1282 YSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKR 1341 N+ + NG A +LGITKASL T+SF+SAASFQETT+VLT+AA+ GK Sbjct: 1191 RHDYARINQVVIDNGGEPAQAEEIILGITKASLNTDSFLSAASFQETTKVLTDAALEGKI 1250 Query: 1342 DELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQVTAEDASASLAELLNAGL 1401 D L GLKENVI+G+LIPA TG ++ R+ A P LA L Sbjct: 1251 DRLNGLKENVIIGKLIPAATGLKRYR-RIEIEPAEPLPRGMDDVGLLDHDELAAELGLTD 1309 Query: 1402 GGS 1404 G + Sbjct: 1310 GEA 1312 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 103/239 (43%), Positives = 146/239 (61%), Gaps = 14/239 (5%) Query: 12 TKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECL 71 FDAI+I LAS IRSWS GEV KPETINYRT KPE+DGLFC RIFGP KD+EC Sbjct: 2 IDINNFDAIEIGLASSKQIRSWSSGEVTKPETINYRTLKPEKDGLFCERIFGPTKDWECY 61 Query: 72 CGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMP 131 CGKYKR++++G++CE+CGVEVT++KVRRERMGHI+LA+P +HIWF K +PSRIG LLDM Sbjct: 62 CGKYKRVRYKGIVCERCGVEVTRSKVRRERMGHIDLAAPVSHIWFFKGVPSRIGYLLDMA 121 Query: 132 LRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAK------------ 179 +++E+VLYF + +V ER +++ L+ + E + + Sbjct: 122 PKELEKVLYFAASIVTWIDDEARERDLDSLQDEVNKVLDSYAAEKEERLLELRESLERRV 181 Query: 180 MGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMI 238 E+ + + D ++ + + S+ +R+KL + ++ F + E I Sbjct: 182 SFLESGRQSNQFNDEDEMWAEALDVNVARLSDEEREKLLRELR--RTFQADMDDTEAYI 238 >UniRef50_P47582 DNA-directed RNA polymerase subunit beta' n=6 Tax=Mycoplasma RepID=RPOC_MYCGE Length = 1292 Score = 808 bits (2086), Expect = 0.0, Method: Composition-based stats. Identities = 443/1185 (37%), Positives = 652/1185 (55%), Gaps = 136/1185 (11%) Query: 1 MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60 M + + + AIK+++AS D I +WS GEV K ETINY++ KPE GLF Sbjct: 1 MTTTRRNKRNNKLYKNIKAIKLSIASNDTILNWSEGEVTKAETINYKSLKPEPGGLFDEA 60 Query: 61 IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120 IFGPVKDYEC CGK+K++K+RGV C++CGV VT++ VRRERMGHI L SP AHIW K L Sbjct: 61 IFGPVKDYECACGKFKKIKYRGVRCDRCGVWVTESIVRRERMGHIALVSPVAHIWMSKEL 120 Query: 121 PSR--IGLLLDMPLRDIERVLYFESYVVIEGGMTN------------------------- 153 PS I L+L++ +++E+VLYF +Y+V++ G Sbjct: 121 PSPSKISLVLNISYKEVEQVLYFVNYIVLDTGKIKDDKIMPFKFKEVLDLTGKGSLSTRQ 180 Query: 154 ---------------------LERQQILTEEQYLDALE----------EFGDEFDAKMGA 182 + +I E +L + F +GA Sbjct: 181 KMRRVIGYIFRNLIKSKSSEDYRKGKIFYESLKNSSLPFSLNDAFNYIKKYTGFRVGIGA 240 Query: 183 EAIQALLKSMDLEQECEQLREELNETNSET----KRKKLTKRIKLLEAFVQSGNKPEWMI 238 EAI LL +DL E +L + L + ++ K KK+ ++++ + F S P+ MI Sbjct: 241 EAILELLNKIDLNLEFSRLNDALRKAKKDSVEDAKVKKILRQLETISWFRNSKLHPKNMI 300 Query: 239 LTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAA-PDIIVRNEKR 297 L +PV+PPD+RP++ LDG +F TSD+N+ YRRVI RN+RL+R+L+ P I+V NEKR Sbjct: 301 LHTVPVIPPDIRPIIQLDGAKFTTSDINNFYRRVIIRNDRLRRILEDGTVPSIVVNNEKR 360 Query: 298 MLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITV 357 +LQE+VDAL DN R + +KR LKSL D +KGKQG FR NLLGKRVDYSGRSVI V Sbjct: 361 LLQESVDALFDNSSRHKPSLSKDKRSLKSLTDRLKGKQGLFRHNLLGKRVDYSGRSVIVV 420 Query: 358 GPYLRLHQCGLPKKMALELFKPFIYGKLE---------LRGLATTIKAAKKMVEREEAVV 408 GP L++++ G+P M L+LFKPFI L +R +A +I+ A+ M++ ++ ++ Sbjct: 421 GPELKMYEVGIPALMILKLFKPFIIHGLINKFDENGNEIRPIAASIRQAEDMIKNQDDLI 480 Query: 409 WDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAV 468 W I+ +VI++ PVLLNRAPTLHRLGIQAFEP +++GKAI+LHPLV A+NADFDGDQMAV Sbjct: 481 WGIVYDVIKDRPVLLNRAPTLHRLGIQAFEPRIVDGKAIRLHPLVTTAFNADFDGDQMAV 540 Query: 469 HVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLT 528 HVPL+ A EARA+++++ +IL +G PI+ P+QD+VLG YY+T + GEG++ + Sbjct: 541 HVPLSENAVNEARAVLLASKHILGLKDGRPIVTPTQDMVLGNYYLTTERKGQLGEGIIFS 600 Query: 529 GPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLP 588 EA Y S LHA V + K + A TTVG+ I ++ +P Sbjct: 601 TVYEARAAYESQKVHLHAIVGIS----TKAFPNKKFACQGTLITTVGKIIFNDVLGNNVP 656 Query: 589 Y-----------------------------SIVNQALGKKAISKMLNTCYRILGLKPTVI 619 Y + A KK ISK+++ Y +L K Sbjct: 657 YINDGEFDENACPEKFIVKQGEDVRQSILKHQIIPAFSKKVISKLIDLLYLLLEFKDLPK 716 Query: 620 FADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERY 679 D I GF Y+ S +V + D+ K A+ +V + ++ + GL+T ERY Sbjct: 717 TLDNIKALGFKYSTFSSTTVSVFDIPKYTNKQNYFDSADQQVLKYKQFYNKGLLTDDERY 776 Query: 680 NKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQ 739 +V+ +W ++VS + + ++ E Q NSI +MADSGARG+ + Q Sbjct: 777 KRVVKLWNNVKEKVSDEIQNLIKQE-----------QYRDNSIVVMADSGARGNISNFTQ 825 Query: 740 LAGMRGLMAKPD-----------GSIIETPITANFREGLNVLQYFISTHGARKGLADTAL 788 L GMRGLM+K IE PI +F EGL + +YF S++GARKG+ DTA+ Sbjct: 826 LFGMRGLMSKSFNYERNNQSKIIKDTIEVPIKHSFFEGLTINEYFNSSYGARKGMTDTAM 885 Query: 789 KTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDV--KEPLRDRVLGRVTAE 846 KTA SGY+TR+LVD +L++ DDCGT +GI++ ++E E L DR++ R + Sbjct: 886 KTAKSGYMTRKLVDATHELIINHDDCGTRKGIVVEAIVETKTKSLIESLFDRIVNRYSIT 945 Query: 847 DVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARG 906 ++ P T +V N+L+ Q + S+ V VRSV+ C+ + G+C +C+G DL+ G Sbjct: 946 PIVDPETQKTIVEANSLITTQLAKQICATSIKEVLVRSVIYCERENGICQYCFGIDLSTG 1005 Query: 907 HIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAA-SRAAAESSIQVKNKGSIKLSN--V 963 ++ G A+GVIAAQSIGEPGTQLTMRTFH GG + A+ ++K + Sbjct: 1006 KLVELGTAVGVIAAQSIGEPGTQLTMRTFHTGGVSTENNLAQGFERLKQIFEVVTPKDFE 1065 Query: 964 KSVVNSSGKLV--ITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVAN-- 1019 K+V++ V IT+ +++ + + Y +P+ A + G+QV+ G + Sbjct: 1066 KAVISEVKGTVKSITTVQNAQEVVIKSNVDERIYTIPFSAQIRVHVGDQVSPGSKITEGS 1125 Query: 1020 WDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDS 1064 D + I + ++ + + Q ++ +++ Sbjct: 1126 VDIKQLLRIAGIQRVRQYMIVEIQKVYRIQGIDIADKYVEIIIRQ 1170 Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats. Identities = 100/387 (25%), Positives = 173/387 (44%), Gaps = 21/387 (5%) Query: 983 KLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMID 1042 +LI + A++ + + + T ++D Sbjct: 903 ELIINHDDCGTRKGIVVEAIVETKTKSLIES-------------LFDRIVNRYSITPIVD 949 Query: 1043 GQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLP 1102 +T + + +++ + + +R + G G D+ + Sbjct: 950 PETQKTIVEANSLITTQLAKQICATSIKEVLVRSVIYCERENGICQYCFGIDLSTGKLVE 1009 Query: 1103 GKAIVQLEDGVQI-SSGDTLARIPQESGGTK---DITGGLPRVADLFEARRPK--EPAIL 1156 V + I G L +GG ++ G R+ +FE PK E A++ Sbjct: 1010 LGTAVGVIAAQSIGEPGTQLTMRTFHTGGVSTENNLAQGFERLKQIFEVVTPKDFEKAVI 1069 Query: 1157 AEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEA 1216 +E+ G V + + +VI D IP Q+ V G++V G I++G Sbjct: 1070 SEVKGTVKSITTVQNAQEVVIKS--NVDERIYTIPFSAQIRVHVGDQVSPGSKITEGSVD 1127 Query: 1217 PHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLE 1276 +LR+ G+ V +Y++ E+Q VYR+QG+ I DK++E+I+RQ+ + +AG+S+ Sbjct: 1128 IKQLLRIAGIQRVRQYMIVEIQKVYRIQGIDIADKYVEIIIRQLTNLLQVTDAGNSNLFV 1187 Query: 1277 GEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAA 1336 G+ V + N+ L GK+ + GI +A+ + SF+SAASFQ+T ++LT+AA Sbjct: 1188 GQLVHSHYLNELNKSLLLAGKMPVIAINQVFGIDEAASKSNSFLSAASFQDTKKILTDAA 1247 Query: 1337 VAGKRDELRGLKENVIVGRLIPAGTGY 1363 V + D L GLKENVI+G IPAGTG+ Sbjct: 1248 VKNQVDYLLGLKENVIIGGKIPAGTGF 1274 >UniRef50_C5SEJ2 DNA-directed RNA polymerase n=6 Tax=Proteobacteria RepID=C5SEJ2_CHRVI Length = 1506 Score = 807 bits (2085), Expect = 0.0, Method: Composition-based stats. Identities = 541/724 (74%), Positives = 618/724 (85%), Gaps = 8/724 (1%) Query: 1 MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60 MKDLLK +K Q + EFDAIKI LASP+MIRSWS+GEVKKPETINYRTFKPERDGLFCA+ Sbjct: 1 MKDLLKIIKQQGQALEFDAIKIGLASPEMIRSWSYGEVKKPETINYRTFKPERDGLFCAK 60 Query: 61 IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120 IFGP+ DYEC+CGKYKRLKHRGV+CEKCGVEVT KVRRERMGHI+LASP AHIWFLKSL Sbjct: 61 IFGPITDYECICGKYKRLKHRGVVCEKCGVEVTLAKVRRERMGHIDLASPVAHIWFLKSL 120 Query: 121 PSRIGLLLDMPLRDIERVLYFESYVVIEGGMT-NLERQQILTEEQYLDALEEFGDEFDAK 179 PSRIGLLLDM LRDIER+LYFES+VVI+ GM +LER Q+L +EQYLD LE GDEFDA+ Sbjct: 121 PSRIGLLLDMTLRDIERILYFESFVVIDPGMIVDLERGQLLNDEQYLDVLEANGDEFDAR 180 Query: 180 MGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMIL 239 MGAEAI LL+S+D+ E ++REE+ TNSETK KKL KR+KL+E+ + SGN+PEWMIL Sbjct: 181 MGAEAIYELLRSIDMAAEIRRMREEIESTNSETKIKKLAKRLKLMESLLASGNRPEWMIL 240 Query: 240 TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRML 299 TVLPVLPP+LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDL APDIIVRNEKRML Sbjct: 241 TVLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLIAPDIIVRNEKRML 300 Query: 300 QEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP 359 QE+VDALLDNGRRGRAITG+NKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVI VGP Sbjct: 301 QESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGP 360 Query: 360 YLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREH 419 L+LHQCGLPK+MALELFKPFI+ KL+ RGLA TIKAAKKMVER VWDIL+EVIREH Sbjct: 361 TLKLHQCGLPKRMALELFKPFIFSKLQFRGLAATIKAAKKMVERGTPEVWDILEEVIREH 420 Query: 420 PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLE 479 PV+LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVC A+NADFDGDQMAVHVPL+LEAQLE Sbjct: 421 PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE 480 Query: 480 ARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRS 539 ARALMM++NNILSPANGEPIIVPSQDVVLGLYYMTR+ + AKGEG + + EA R Y + Sbjct: 481 ARALMMASNNILSPANGEPIIVPSQDVVLGLYYMTRERIGAKGEGALFSNIDEARRAYET 540 Query: 540 GLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKK 599 G A LHAR VR+ E K +G L +TSLK+TTVGRA+++ IVP+GLP+ +V++ LGKK Sbjct: 541 GHADLHARCTVRLREVIKHKDGSLTERTSLKETTVGRAMVFAIVPEGLPFELVDRPLGKK 600 Query: 600 AISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPE-------KKHE 652 IS ++NTCYR LGLK TV+FADQ+MY GF A R+G S+G+DDM +P K Sbjct: 601 QISMLINTCYRRLGLKDTVVFADQVMYLGFRMATRAGVSIGLDDMEVPRDDQDAKMDKGA 660 Query: 653 IISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQ 712 +++ AE EV EIQ+Q+ SGLVT GERYNKV+DIW+ ND+V+KAMM L T+ G Sbjct: 661 LLAAAELEVQEIQQQYASGLVTNGERYNKVVDIWSRTNDQVAKAMMSKLGTDLAKTDPGF 720 Query: 713 EEKQ 716 E ++ Sbjct: 721 EAER 724 Score = 681 bits (1756), Expect = 0.0, Method: Composition-based stats. Identities = 456/686 (66%), Positives = 536/686 (78%), Gaps = 3/686 (0%) Query: 714 EKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYF 773 KQ SFNSIYMMA+SGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNV+QYF Sbjct: 821 RKQDSFNSIYMMANSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVIQYF 880 Query: 774 ISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKE 833 ISTHGARKGLADTALKTANSGYLTRRLVDVAQD+VV E+DCGT +G++M PVIEGGDV E Sbjct: 881 ISTHGARKGLADTALKTANSGYLTRRLVDVAQDMVVLEEDCGTDQGLLMAPVIEGGDVVE 940 Query: 834 PLRDRVLGRVTAEDVLKP--GTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTD 891 PLRDR+LGRVTA DV +P +++ TLL E W + E+ +D V+VRS ++C++ Sbjct: 941 PLRDRILGRVTAVDVYRPGVDNPELICKAGTLLDEGWVERFEDVGIDQVRVRSPITCESR 1000 Query: 892 FGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQ 951 GVCA CYGRDLARGH +N GEA+GVIAAQSIGEPGTQLTMRTFHIGGAASRAAA SSI+ Sbjct: 1001 LGVCAQCYGRDLARGHRVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVSSIE 1060 Query: 952 VKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQV 1011 +KN GS +L N+K+V + SG LV SR+ EL ++DE G KE YKVPYGA L GDG+ V Sbjct: 1061 IKNGGSARLHNIKTVQHHSGNLVAVSRSGELTVVDERGMEKERYKVPYGATLRVGDGDAV 1120 Query: 1012 AGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGG 1071 G+ VA WDPHT PV+TEV+G + F D I+G T+ QTD++TGLSSLVV+D +R A G Sbjct: 1121 KPGDVVATWDPHTHPVVTEVAGRLEFEDFIEGVTVQAQTDDVTGLSSLVVIDPKQRPAAG 1180 Query: 1072 KDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGT 1131 KDLRP +K++D GN++ I GTD+PA+Y L AIV + +G + GD LARIPQES T Sbjct: 1181 KDLRPMVKLLDENGNELNIAGTDLPARYALSSGAIVSVANGANVGVGDILARIPQESSKT 1240 Query: 1132 KDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIP 1191 +DITGGLPRVADLFEAR+PKEPA+LAE SG + FGK+TKGK+RL+IT DG + EE+IP Sbjct: 1241 RDITGGLPRVADLFEARKPKEPALLAEASGTIGFGKDTKGKQRLIITKDDG-ETVEELIP 1299 Query: 1192 KWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDK 1251 KWR +NVFEGERVERG+VI+DG A HDILRL+GV A+ Y+V E+QDVYRLQGVKINDK Sbjct: 1300 KWRHVNVFEGERVERGEVIADGELASHDILRLKGVTALAEYLVKEIQDVYRLQGVKINDK 1359 Query: 1252 HIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITK 1311 HIEVIVRQMLRK + G + L GEQVE++ + N+ A GK A Y LLGITK Sbjct: 1360 HIEVIVRQMLRKVEVTAPGDTRLLRGEQVEHALLIDENKRAMAEGKQPALYEPLLLGITK 1419 Query: 1312 ASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMR 1371 ASLATESFISAASFQETTRVLTEAAV G D L GLKENVIVGRLIPAGTG +YHQ+R R Sbjct: 1420 ASLATESFISAASFQETTRVLTEAAVRGSTDRLVGLKENVIVGRLIPAGTGLSYHQERRR 1479 Query: 1372 RRAAGEAPAAPQVTAEDASASLAELL 1397 +R + + + E Sbjct: 1480 QRVLDSGKVEMATEDLEQALNTPEAA 1505 >UniRef50_Q1AU23 DNA-directed RNA polymerase subunit beta' n=11 Tax=Bacteria RepID=RPOC_RUBXD Length = 1295 Score = 805 bits (2079), Expect = 0.0, Method: Composition-based stats. Identities = 444/961 (46%), Positives = 579/961 (60%), Gaps = 66/961 (6%) Query: 144 YVVIEGGMTNLERQQILTEEQYLDALEEFGDE------FDAKMGAEAIQALLKSMDLEQE 197 E T RQ + EE + + + FGDE F MGAEAI+ L++ +DLE+E Sbjct: 241 RRAWEEFQTLEPRQIVDDEELFREMKDRFGDEYGYGVYFRGGMGAEAIRDLIRQVDLEKE 300 Query: 198 CEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDG 257 +LR+ + E+ KR+K KR+K+++AF SGNKPEWMIL +PVLPPDLRP+V LDG Sbjct: 301 ARELRQVVGESRG-QKRQKAIKRLKVVDAFRTSGNKPEWMILDAIPVLPPDLRPMVQLDG 359 Query: 258 GRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAIT 317 GRFATSDLNDLYRRVINRNNRLKRLLDL APD+IV NEKRMLQEAVDAL DNGRRGRA+T Sbjct: 360 GRFATSDLNDLYRRVINRNNRLKRLLDLGAPDVIVNNEKRMLQEAVDALFDNGRRGRAVT 419 Query: 318 GSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELF 377 G+ RPLKSL+DM+KGKQGRFRQNLLGKRVDYSGRSVI VGP L +HQCGLP+ MA+ELF Sbjct: 420 GAGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPQLEMHQCGLPRLMAVELF 479 Query: 378 KPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAF 437 KPF+ L R LA I++AK+MVER VWD+L++VI+EHPVLLNRAPTLHRLGIQAF Sbjct: 480 KPFVMKVLVDRALAPNIRSAKQMVERLRPEVWDVLEDVIKEHPVLLNRAPTLHRLGIQAF 539 Query: 438 EPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGE 497 EPVL+EGKAIQ+HPLVCAA+NADFDGDQMAVHVPL+ EAQ EAR LM+ST NIL PA+G Sbjct: 540 EPVLVEGKAIQIHPLVCAAFNADFDGDQMAVHVPLSPEAQAEARILMLSTQNILKPADGF 599 Query: 498 PIIVPSQDVVLGLYYMTR--DCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEY 555 P+ VPSQD+VLGLYY+T + + +L EA+ YR G LH +V +R Sbjct: 600 PVAVPSQDMVLGLYYITYAGEDFEEREPKALLASYAEADNAYREGSLRLHDKVILR---- 655 Query: 556 EKDANGELVAKTSLKDTTVGRAILWMIVPKGLP-----------YSIVNQALGKKAISKM 604 + +TT+GR + + + L Y VN L K I ++ Sbjct: 656 ---------REGERIETTLGRVLFNESIERTLRGYLGDAYNPAAYRFVNHELKKGEIKQL 706 Query: 605 LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEI 664 + + D + + GF A +G S+G +D+V+PE+K EI+ + E V E+ Sbjct: 707 VQQYVERYPTELVSQLLDTLKHVGFHTATLAGISIGKNDIVVPEQKREILEKYEKLVEEV 766 Query: 665 QEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 724 +EQ+++G ++ ER +VI +W A + V +AM NL N IYM Sbjct: 767 EEQWEAGFISDEERAERVIGLWTQAKNEVEEAMKANL---------------WKLNPIYM 811 Query: 725 MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLA 784 MA+SGARGS +QI QLAGMRGLM G II+ P+ +NF EGL VL+YF STHGARKG A Sbjct: 812 MANSGARGSYSQITQLAGMRGLMTNAKGEIIDEPVKSNFMEGLTVLEYFTSTHGARKGQA 871 Query: 785 DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT 844 DTAL+TA+SGYLTRRLVDVAQD+V+ E+DCGT I + + D + D V R Sbjct: 872 DTALRTADSGYLTRRLVDVAQDVVIREEDCGTDGYIEL--PLYLEDGQGDPNDSVAARYL 929 Query: 845 AEDVLKPGTADILVPRNTLLHEQWCDLLEEN--SVDAVKVRSVVSCDTDFGVCAHCYGRD 902 A D++ P T +++ T + + E V VR+ C+ GVC CYGR Sbjct: 930 ARDLVNPETGEVVAEAGTDITRPLFEAWLEELPRETKVPVRTPTKCENPHGVCQKCYGRS 989 Query: 903 LARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAAS-RAAAESSIQVKNKGSIKLS 961 LA ++ GEA+G+IAAQSIGEPGTQLTMRTFH GG + +V + Sbjct: 990 LATNRPVDVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVSGVEDITAGLPRVVELFEARHP 1049 Query: 962 NVKSVVNSSGKLVITSRNTELKLID-----EFGRTKESYKVPYGAV-LAKGDGEQVAGGE 1015 ++V++ +V +L+ G Y+V + DG ++ Sbjct: 1050 KGEAVISDIDGIVSLEETDSERLVRVVVTAPDGSEAREYRVERQLLRPEIVDGAEIRANT 1109 Query: 1016 TVANWDPHTMPVITEV-------SGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERT 1068 + + ++ + R+ + Q ++ +++ R Sbjct: 1110 PITEGSLYPHQILENDLRYGRGTTATERYLVDEVQKVYRAQGVDIHDKHIEIIVRQMLRK 1169 Query: 1069 A 1069 Sbjct: 1170 V 1170 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 131/351 (37%), Positives = 185/351 (52%), Gaps = 13/351 (3%) Query: 1031 VSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDS--AERTAGGKDLRPALKIVDAQGNDV 1088 V+ D+++ +T + T ++ + +R K + G Sbjct: 924 VAARYLARDLVNPETGEVVAEAGTDITRPLFEAWLEELPRETKVPVRTPTKCENPHGVCQ 983 Query: 1089 LIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDTLARIPQESGGT---KDITGGLPRVADL 1144 G + + V + I G L +GG +DIT GLPRV +L Sbjct: 984 KCYGRSLATNRPVDVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVSGVEDITAGLPRVVEL 1043 Query: 1145 FEARRPKEPAILAEISGIVSFGK-ETKGKRRLVITPVDGSDPYEEMIP-KWRQLNVFEGE 1202 FEAR PK A++++I GIVS + +++ R+V+T DGS+ E + + + + +G Sbjct: 1044 FEARHPKGEAVISDIDGIVSLEETDSERLVRVVVTAPDGSEAREYRVERQLLRPEIVDGA 1103 Query: 1203 RVERGDVISDGPEAPHDILRL-----RGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIV 1257 + I++G PH IL RG A RY+V+EVQ VYR QGV I+DKHIE+IV Sbjct: 1104 EIRANTPITEGSLYPHQILENDLRYGRGTTATERYLVDEVQKVYRAQGVDIHDKHIEIIV 1163 Query: 1258 RQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATE 1317 RQMLRK + G + FL + + V N +E G A + L+GITKASLATE Sbjct: 1164 RQMLRKVLVEEPGDTRFLPEQVADRFSVLAENERVEEEGGRPAEFHTILMGITKASLATE 1223 Query: 1318 SFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD 1368 SF+SAASFQET RVLT+AA+ GK D L GLKENVI+G+LIPA TG ++ Sbjct: 1224 SFLSAASFQETARVLTDAAIEGKVDNLTGLKENVIIGKLIPAATGLPKYRR 1274 Score = 185 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 93/178 (52%), Positives = 126/178 (70%), Gaps = 4/178 (2%) Query: 5 LKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGP 64 ++ L+ + I I LAS D IR WS GEV KPETINYRT +PE+DGLF RIFGP Sbjct: 1 MQALERDIDINRLEKISIGLASADEIREWSRGEVTKPETINYRTLRPEKDGLFDERIFGP 60 Query: 65 VKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRI 124 KD+EC CGKYKR++ +G+ICE+CGVEVT+ +VRR+RMGHIELA+P AH+WF+K +PSR+ Sbjct: 61 TKDWECYCGKYKRIRFKGIICERCGVEVTRARVRRDRMGHIELAAPVAHVWFVKGVPSRM 120 Query: 125 GLLLDMPLRDIERVLYFESYVV----IEGGMTNLERQQILTEEQYLDALEEFGDEFDA 178 G LLD+ +D++RVLYF S +V EG +++R + EE+ ++ +E A Sbjct: 121 GYLLDISPKDLDRVLYFASSIVTWVDREGRANDIDRLRQQVEEEIRQIEQDRDEEITA 178 >UniRef50_B9GIK9 DNA-directed RNA polymerase n=2 Tax=Magnoliophyta RepID=B9GIK9_POPTR Length = 1394 Score = 801 bits (2068), Expect = 0.0, Method: Composition-based stats. Identities = 281/1540 (18%), Positives = 509/1540 (33%), Gaps = 328/1540 (21%) Query: 3 DLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIF 62 + +I+ + S I S +V + + K GL R+ Sbjct: 10 YTKQPYIEDVGPRRIKSIQFSTMSGSDILKASECQVHLGQYYD-ANKKAIVGGLLDTRMG 68 Query: 63 GPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPS 122 P ++ C+ CG T G++ L P ++ +L ++ Sbjct: 69 AP---------------NKHGTCQTCGGSFTDCP---GHFGYLNLVLPVYNVGYLSTILD 110 Query: 123 RIGLLLDMPLRDIERVLYFESYVVI--EGGMTNLERQQILTE-----------EQYLDAL 169 + + R + +SY+ L++ +++ E + Sbjct: 111 ILKCICKSCSRVLVDEKLRKSYLKRMRNPRTEPLKKNELMKEIVKKCSSMASSKAVKCLR 170 Query: 170 EEFGDEFDAKMGA-------------EAIQALLKSMDLEQECEQ----LREELNETNSET 212 + + K G+ ++ ++ +E LN + Sbjct: 171 CGYMNGMVKKAGSVVGIIHDRSKLIDGYLEECKSAIGHTREARAPIGLATYILNPVRVLS 230 Query: 213 KRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRV 272 +++ + L +PE +I+T + V P +RP V +G + +D+ + +++ Sbjct: 231 LFQRMVEEDCELLYL---QGRPEKLIITTIAVPPISIRPSVFTEGSQSNENDITERLKQI 287 Query: 273 INRNNRLK-RLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMI 331 I N +L+ LL+ I LQ V +++ R + RPL + Sbjct: 288 IQFNAKLRLELLEGRRTGIKYLIGWDELQAVVTLYINSDVR-IPLDMQVGRPLSGFVQRL 346 Query: 332 KGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLA 391 GKQGRFRQNL GKRV+++GR+VI+ P L++ + +P MA L P + L Sbjct: 347 TGKQGRFRQNLAGKRVEFTGRTVISPDPNLKITEVAIPIHMARILTYPERVTHHNIEKLR 406 Query: 392 TTIKAAKKMVEREEAVVWD------------------------ILDEVIREHPVLLNRAP 427 + V + + + VL NR P Sbjct: 407 QCVNNGSYKYPGARMVTYPDGSSKMLTGNYRKRIAEELKSGCIVHRHLEDGDVVLFNRQP 466 Query: 428 TLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMST 487 +LHR+ I ++ + ++ + VC YNADFDGD+M +HVP T EA+ EA LM Sbjct: 467 SLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAFLLMGVQ 526 Query: 488 NNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHAR 547 NN+ +P NGE ++ +QD + + +TR L Y + L Sbjct: 527 NNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCS------YMNDGMDLVDL 580 Query: 548 VKVRITEYEKDANGELVAKTSLKDTTVGRAILWMI--------------------VPKGL 587 + + + G+ + L+ R + +I P Sbjct: 581 PTPSVLKPIELWTGKQLFSVLLRPHANVRVYVNLILKEKNYSRPNKEHKKERETMCPNDG 640 Query: 588 PYSIVN-----QALGKKAIS-----KMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGA 637 N LGK + + + R +++ + G Sbjct: 641 YVYFRNSELISGQLGKATLGNGNKDGLYSILLRDYNAYAAATCMNRLAKLSARWIGNHGF 700 Query: 638 SVGIDDM----VIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRV 693 S+GIDD+ + ++K + IS ++ + G + + + +R+ Sbjct: 701 SIGIDDVQPGKKLIDEKGKTISNGYRHCNKLIADYNGGRLALKSGCDATQTLETEITERL 760 Query: 694 SKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAK---- 749 +K D ++ NS +M+ G++GS I Q+ G + Sbjct: 761 NK--------LREEAGDVCMKELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGSR 812 Query: 750 -PDGSI---------------IETPITANFREGLNVLQYFISTHGARKGLADTALKTANS 793 PDG I + + +F GL+ ++F T G R+GL DTA+KTA++ Sbjct: 813 APDGFIDRSLPHFPRKSKTPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADT 872 Query: 794 GYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLR-----------DRVLGR 842 GY+ RRL +DL V D+ G + + G D +P DR+ + Sbjct: 873 GYMARRLSKGLEDLCVQYDNTVQDAGGGIVQFLYGDDGLDPAIMEGKAGVPLNFDRLFMK 932 Query: 843 VTA------EDVLKPGTADILVPRNTLLHEQWCDLLEENSVDA----------------- 879 V A ++ L P +V L H D + S Sbjct: 933 VKATCGAEEDEYLSPSDISNIVQSLLLKHNGTLDGICSESFRKSLSSFLGDQAKRLECLM 992 Query: 880 -----VKVRSVVSCDTDFGVC-----------------------AHCYGRDLARGHIINK 911 V+V + + G+ D I Sbjct: 993 KLVDGVEVENFENIKNVEGLTGISKNTEKIAQKVSGITEKQLEVFLKTCLDRYVWKRIEP 1052 Query: 912 GEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSG 971 G AIG I AQSIGEPGTQ+T++TFH G AS + + +K ++N + Sbjct: 1053 GTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPR-----------IKEIINGAK 1101 Query: 972 KLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEV 1031 ++ + + E + ++ G + G+ VA + +T Sbjct: 1102 RISTPI----ITVELEHNSNVNAARIIKGRIQKTVLGQ-VAKSIKIVMTSRSASVKVTLD 1156 Query: 1032 SGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIP 1091 +R + I R+ T + G ++ P N + Sbjct: 1157 MKTIREAQLSLDANIVRELILETPKIKRKLQRINVLEDGKLEVFPG-----GDRNKLHFE 1211 Query: 1092 GTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPK 1151 + ++ + G+ V + A++ Sbjct: 1212 LHSL-------------------------------KNMLPAVVVKGIKTVERVVIAQKKL 1240 Query: 1152 EPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVIS 1211 + A G Y + V E V+ Sbjct: 1241 DDAEN-----------------------DQGGPKYNMFVEGMGLQAVMGTEGVDGRK--- 1274 Query: 1212 DGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGS 1271 ++ G+ A + I++E++ G+ I+ +H+ ++ M Sbjct: 1275 TKSNHIIEVQETLGIEAARKCIIDEIKGTMESHGMSIDIRHMMLLADVMTS--------- 1325 Query: 1272 SDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLAT--ESFISAASFQETT 1329 +LGIT+ + +S + ASF++T+ Sbjct: 1326 -------------------------------RGVVLGITRFGIQKMDKSVLMLASFEKTS 1354 Query: 1330 RVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDR 1369 L A+V GK D++ G+ E +I+G + GTG Q R Sbjct: 1355 DHLFNASVKGKDDKIEGVSECIIMGIPVAIGTGVLKIQQR 1394 >UniRef50_P04050 DNA-directed RNA polymerase II subunit RPB1 n=210 Tax=Eukaryota RepID=RPB1_YEAST Length = 1733 Score = 800 bits (2066), Expect = 0.0, Method: Composition-based stats. Identities = 279/1562 (17%), Positives = 527/1562 (33%), Gaps = 237/1562 (15%) Query: 4 LLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFG 63 ++ + ++ L SP+ +R+ S +++ PET++ + + GL R+ Sbjct: 1 MVGQQYSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGS 60 Query: 64 PVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWF------- 116 R + C+ C + + GHI+LA P H+ F Sbjct: 61 I---------------DRNLKCQTCQEGMNECP---GHFGHIDLAKPVFHVGFIAKIKKV 102 Query: 117 LKSLPSRIGLLL-DMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDE 175 + + G LL D + + L + + L + +++ E + + Sbjct: 103 CECVCMHCGKLLLDEHNELMRQALAIKDSKKRFAAIWTLCKTKMVCETDVPSEDD--PTQ 160 Query: 176 FDAKMGAEAIQALLKSMDLEQECEQLRE------------ELNETNSETKRKKLTKRIKL 223 ++ G Q ++ L+ ++ L+ K ++ + Sbjct: 161 LVSRGGCGNTQPTIRKDGLKLVGSWKKDRATGDADEPELRVLSTEEILNIFKHISVKDFT 220 Query: 224 LEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLL 283 F + ++PEWMILT LPV PP +RP + + + DL ++ N L+ L Sbjct: 221 SLGFNEVFSRPEWMILTCLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLE 280 Query: 284 DLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAIT-GSNKRPLKSLADMIKGKQGRFRQNL 342 AP + + +LQ V +DN G+ + RP+KS+ +KGK+GR R NL Sbjct: 281 HNGAPHHAIEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNL 340 Query: 343 LGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAA----- 397 +GKRVD+S R+VI+ P L L Q G+PK +A L P + + L ++ Sbjct: 341 MGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHP 400 Query: 398 -KKMVEREEAVV-----------------WDILDEVIREHPVLLNRAPTLHRLGIQAFEP 439 K V R+ W + ++ PVL NR P+LH++ + A Sbjct: 401 GAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRV 460 Query: 440 VLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPI 499 +I +L+ V + YNADFDGD+M +HVP + E + E L I+SP + +P Sbjct: 461 KVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPC 520 Query: 500 IVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDA 559 + QD + G+ +T + + VL G+ A +K + K Sbjct: 521 MGIVQDTLCGIRKLTLRDTFIELD-QVLNMLYWVPD--WDGVIPTPAIIKPKPLWSGKQI 577 Query: 560 NGELVAKTSLKD-----TTVGRAILW--MIVPKGLPYSIVNQALGKKAISKMLNTCYRIL 612 + TT+ +I+ + + +V + + +++ R Sbjct: 578 LSVAIPNGIHLQRFDEGTTLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREK 637 Query: 613 GLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIP----EKKHEIISEAEAEVAEIQEQF 668 G + I + +G S GI D + + E I+EA+ +V ++ ++ Sbjct: 638 GPQVCAKLFGNIQKVVNFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEA 697 Query: 669 QSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADS 728 Q+ L+TA + ++ L E N++ M + Sbjct: 698 QANLLTAKHGM--------TLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMA 749 Query: 729 GARGSAAQIRQLAGMRGLMAKPDGSI--------------------IETPITANFREGLN 768 G++GS I Q++ G + I + + ++ GL Sbjct: 750 GSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLT 809 Query: 769 VLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEG 828 ++F G R+GL DTA+KTA +GY+ RRLV +D++V D+ + + I G Sbjct: 810 PQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYG 869 Query: 829 GDVKE--PLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVV 886 D + + + L + D + + + + +K++ ++ Sbjct: 870 EDGMDAAHIEKQSLDTIGGSDAAFEKRYRVDLLNTDHTLDPSLLESGSEILGDLKLQVLL 929 Query: 887 SCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHI-----GGAA 941 + V + R++ N + + Q +TFHI Sbjct: 930 DEEYKQLVKDRKFLREVFVDGEANWPLPVNI-------RRIIQNAQQTFHIDHTKPSDLT 982 Query: 942 SRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVIT------SRNTELKLIDEFGRTKESY 995 + ++ + + + N+ V SR +++ E+ TK+++ Sbjct: 983 IKDIVLGVKDLQENLLVLRGKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAF 1042 Query: 996 KVPYGAVL------AKGDGEQ--VAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTIT 1047 + GE V +++ +G + Sbjct: 1043 DWVLSNIEAQFLRSVVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLK 1102 Query: 1048 RQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIV 1107 + + + + E + L + + Y ++ V Sbjct: 1103 EILNVAKNMKTPSLTVYLEPGHAADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTV 1162 Query: 1108 QLEDGVQI--------SSGDTLA----------RIPQESGGTKDITGGL--PRVADLF-- 1145 ED I + + + + KD+T G R+ F Sbjct: 1163 IPEDEEIIQLHFSLLDEEAEQSFDQQSPWLLRLELDRAAMNDKDLTMGQVGERIKQTFKN 1222 Query: 1146 ---------------------------------EARRPKE----PAILAEISGIVSFGKE 1168 E K+ + G+ + + Sbjct: 1223 DLFVIWSEDNDEKLIIRCRVVRPKSLDAETEAEEDHMLKKIENTMLENITLRGVENIERV 1282 Query: 1169 TKGKRRLVITPVDGSDPYE-EMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVH 1227 K + G E E + + +N+ E V D + DI+ + G+ Sbjct: 1283 VMMKYDRKVPSPTGEYVKEPEWVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIE 1342 Query: 1228 AVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKI 1287 A + EV +V G +N +H+ ++V M + Sbjct: 1343 AGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQ------------------------ 1378 Query: 1288 ANRELEANGKVGATYSRDLLGITKASLAT--ESFISAASFQETTRVLTEAAVAGKRDELR 1345 L +T+ + SF+ET +L EA + + D+ R Sbjct: 1379 ----------------GGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCR 1422 Query: 1346 GLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQVTAEDASASLAELLNAGLGGSD 1405 G+ ENVI+G++ P GTG P ED + G + Sbjct: 1423 GVSENVILGQMAPIGTGAFDVMIDEE-SLVKYMPEQKITEIEDGQDGGVTPYSNESGLVN 1481 Query: 1406 NE 1407 + Sbjct: 1482 AD 1483 >UniRef50_A8IRZ2 DNA-directed RNA polymerase n=3 Tax=Eukaryota RepID=A8IRZ2_CHLRE Length = 1789 Score = 799 bits (2064), Expect = 0.0, Method: Composition-based stats. Identities = 288/1561 (18%), Positives = 506/1561 (32%), Gaps = 290/1561 (18%) Query: 1 MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60 M + +F + + AI+ ++ P I+++S E+ ET KP+ GL R Sbjct: 1 MASVDRFPFSSAPVRQVKAIQFSVWDPAEIKAYSVAEIVTSETY--EKGKPKLGGLSDPR 58 Query: 61 IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120 + RG IC G + GHI LA P HI F+K++ Sbjct: 59 MGT---------------MDRGGICTTDGANANDSP---GYFGHIALARPVYHIGFIKTV 100 Query: 121 PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLER-QQILTEEQYLDALEEFG--DEFD 177 + V Y S ++++ +I E+ L + D Sbjct: 101 VRVLRC-----------VSYHTSRLLVDKDDPKYAYGLRISDSEKRLRYFVHLCQGKKMD 149 Query: 178 AKMGAEAIQALLKSMDLEQECEQLR-------------EELNETNSETKRKKLTKRIKLL 224 G L + + E +L+ +EL + K++ Sbjct: 150 EATGNPQPSYRLDGLKIMAEFPKLKGDEEQEQDNVERKQELTAARALEIMKRIPAEDCRA 209 Query: 225 EAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLD 284 F +P+WMI+ +PV PP +RP V +D DL ++ NN +K+ Sbjct: 210 LGFDCRFTRPDWMIIQNMPVPPPPVRPSVMMDSSSRCEDDLTHKLAEILRTNNAIKKQDA 269 Query: 285 LAAPDIIVRNEKRMLQEAVDALLDNGRRGRAI-TGSNKRPLKSLADMIKGKQGRFRQNLL 343 P ++ + LQ + DN G + RP+KS+++ +KGK GR R NL+ Sbjct: 270 TGTPQHVIAEQIMALQYHITTYFDNSSPGIPKSNQKSGRPIKSISERLKGKSGRIRGNLM 329 Query: 344 GKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKA------- 396 GKRVD+S R+VIT P + + + G+P +AL L P + L + Sbjct: 330 GKRVDFSARTVITGDPNIGIDELGVPWSIALNLTFPETVTPFNIEKLQKLVDNGPNPPPG 389 Query: 397 --AKKMVEREEAV------------------------------------VWDILDEVIRE 418 K + RE+ + +I Sbjct: 390 ETGAKHIIREDGRRVSLAVVKGDADRRLEPGDKVGGKGTQMTADGGGVARCCVERHLING 449 Query: 419 HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQL 478 VL NR P+LH++ + ++ +L+ V YNADFDGD+M +HV T E + Sbjct: 450 DLVLFNRQPSLHKMSMMGHRVRILPYSTFRLNLSVTTPYNADFDGDEMNMHVAQTHETRA 509 Query: 479 EARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYR 538 E LMM NI+SP +P++ QD +LG MT+ + + + + Sbjct: 510 EMANLMMVPRNIVSPQANKPVMGIVQDALLGTRMMTKRDIFIEKDNFM---NCVMGIEDW 566 Query: 539 SGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAIL-----------WMIVPKGL 587 G + A +K R K V +LK+ + +I L Sbjct: 567 DGTVPMPAVLKPRPLWTGKQIFSMFVPDVNLKNKSAWYKDADVPDMSVDDAQVLIRQGEL 626 Query: 588 PYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIP 647 + + +++ + G F + + T + G S+GI D V Sbjct: 627 LTGALCKKTVGNGAGGLVHLTWLEHGPHAARGFINNVQRTVNYWVLNHGMSIGIGDTVAD 686 Query: 648 EKKH----EIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQT 703 K EII EA+ +V E+ E++Q + A ++ + L Sbjct: 687 AKTMAKVNEIIEEAKRKVKEVVEKYQQNALEAQPG--------RTIHESFEAQVNQILNK 738 Query: 704 ETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSI--------- 754 N+I M +G++GS I Q+ G G I Sbjct: 739 CRDDAGKAAYMSVDLSNNIIKMVTAGSKGSNINISQMMGCVGQQNVEGKRIPFGFQNRTL 798 Query: 755 -----------IETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDV 803 + ++ GL ++F G R+GL DTA+KTA++GY+ RRLV Sbjct: 799 PHFNKDDLGPEARGFVGNSYLRGLTPQEFFFHAMGGREGLIDTAVKTASTGYIQRRLVKA 858 Query: 804 AQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTL 863 +D+VV + + + G D + + R+ G++ P D R Sbjct: 859 MEDMVVRYGGTVRNSQGDVVQFLYGEDGMDAV--RIEGQMFEYLKWDPAKLDK-AYRIDT 915 Query: 864 LHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGE---AIGVIAA 920 + D L +A++ V + + R ++ G+ I + A Sbjct: 916 TRDMPPDWLSAEEYEALRTDPAVEQAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLA 975 Query: 921 QSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNT 980 + I T+ + H G E +V+ + V+ S G V RN Sbjct: 976 RLIWNAQTKFNCKP-HRPGWTGLQVKEVITKVRELCE----RLVVVIGSDGLSVEAQRNA 1030 Query: 981 ELKLIDEFGRTKESYKVPYGAVLAKGDGEQ---------------------VAGGETVAN 1019 + S +V L + +++ Sbjct: 1031 TIMFHSLVRMHLASKRVMSEYKLNNKALDWLLGELETRFFLAQAHAGECVGTVAAQSLGE 1090 Query: 1020 WDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALK 1079 +G + +T + + + + Sbjct: 1091 PTTQMTLNTFHFAGVSAKNVTLGVPRLTELINLAKNIKTPTLTVHLLPGLRENKDAAKEI 1150 Query: 1080 IVDAQGNDVLIPGTDMPAQY--FLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGG 1137 + Y P A + I + + + G +D+ Sbjct: 1151 QSKLEYTCFKNVVKTTEIWYDPVDPANANQTV-----IGEDEEMLSSYYDLAGDEDL-AV 1204 Query: 1138 LPRVADLFEARRPKEPAILAE------------------ISGIVSFGKETKGKRRLVITP 1179 LPR++ A+L + I+ +V+ K R+ + Sbjct: 1205 LPRLSHWLLRFELNRGAMLDKGLTLGAVQKALQDEWEDFINVLVNDDNAEKLIMRIRVVK 1264 Query: 1180 VDG---------------------SDPYEEMIPKWRQLNVF-EGERVERGDV-------- 1209 + D +P R++ + E + V + Sbjct: 1265 TEEASKDESADPTEDTMLKLSGAIMDVRLHGVPNIRKVFIRAENQHVYDKEKGAFRKYEE 1324 Query: 1210 --ISDGPEAPHDILRLRG-------------------VHAVTRYIVNEVQDVYRLQGVKI 1248 + +L G + A + EV++V + G + Sbjct: 1325 WILDTEGINLEQVLAFEGVDSRRTMSNSIIEVLEVLGIEAARAALFKEVRNVIQFDGSYV 1384 Query: 1249 NDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLG 1308 N +H+ +V M K L+ Sbjct: 1385 NYRHLACLVDIMTCKGC----------------------------------------LMA 1404 Query: 1309 ITKASLAT--ESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYH 1366 IT+ + ++ SF+ET +L AA+ G+RD+L G+ +N+++G + P GTG Sbjct: 1405 ITRHGINRNGNGPMTQCSFEETVDILYRAAMFGERDKLMGVSDNIMMGNMCPLGTGSFDL 1464 Query: 1367 Q 1367 Sbjct: 1465 L 1465 >UniRef50_B3DTE1 DNA-directed RNA polymerase subunit beta' n=50 Tax=Actinobacteridae RepID=RPOC_BIFLD Length = 1345 Score = 799 bits (2062), Expect = 0.0, Method: Composition-based stats. Identities = 421/973 (43%), Positives = 579/973 (59%), Gaps = 66/973 (6%) Query: 141 FESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQ 200 F+ + ++ G + + + + + +GD FD MGAEAI+ L+S+DLE ++ Sbjct: 224 FDKFKKLKPGD------MVDDVDLWREMQDRYGDYFDGCMGAEAIKKRLQSLDLETISKE 277 Query: 201 LREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRF 260 LREE+ + SE ++ K KR+K++ AF+ +GNKPE M+L V+PV+PPDLRP+V LDGGRF Sbjct: 278 LREEIKDA-SEQRKTKALKRLKVVNAFLTTGNKPEAMVLDVIPVIPPDLRPMVQLDGGRF 336 Query: 261 ATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSN 320 ATSDLNDLYRRVINRNNRLKRL++L AP+I++ NEKRMLQEAVD+L DNGRRGR +TG++ Sbjct: 337 ATSDLNDLYRRVINRNNRLKRLIELGAPEIMLNNEKRMLQEAVDSLFDNGRRGRPVTGAS 396 Query: 321 KRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPF 380 RPLKSL+DM+KGKQGRFRQNLLGKRVDYSGRSVI VGP LR+HQCGLPK MALELFKPF Sbjct: 397 NRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPSLRMHQCGLPKPMALELFKPF 456 Query: 381 IYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPV 440 + +L A +K+AK++V+R +A VW +L+EVI EHPVLLNRAPTLHRLGIQAFEP+ Sbjct: 457 VIKRLVDLNYAQNMKSAKRLVDRGDAEVWGVLEEVISEHPVLLNRAPTLHRLGIQAFEPI 516 Query: 441 LIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPII 500 L+EGKAI L PL CAA+NADFDGDQMAVH+PL+ EAQ EAR+LMM+++NIL PA+G + Sbjct: 517 LVEGKAIHLPPLACAAFNADFDGDQMAVHLPLSAEAQAEARSLMMASDNILKPADGHTVT 576 Query: 501 VPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITE---YEK 557 +PSQD++LGLYY++ KG+G V + +EAE + A+V +R+ E K Sbjct: 577 MPSQDMILGLYYLSTVLEGVKGQGRVFSSLEEAEMALDRHEIDMQAKVLIRLPESFVLPK 636 Query: 558 DA-------------------NGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGK 598 + T L T+ GR + +P P VN+ + K Sbjct: 637 NWEPGEVKVLDPREGEDEVVKEERFHDGTVLFATSYGRILFNETLPTDYP--FVNEQVAK 694 Query: 599 KAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAE 658 +SK+++ + D + GF A SG S D+ P ++ E I+E E Sbjct: 695 GRLSKIVDDIAMRYSTQQVAATLDALKDLGFTRAPWSGVSFAFSDVNEPPERDEKIAEYE 754 Query: 659 AEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVS 718 A+ ++ ++ GL+T R ++ID+W VSK + + Sbjct: 755 AKADKVNANYEMGLLTEEARRQELIDLWTECTAEVSKEVEEKF---------------DP 799 Query: 719 FNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHG 778 +++ ++ SGARG+ QI Q+AGMRGL+A P G II P+ +N+R+GL+VL+YFIS HG Sbjct: 800 TSNLAIIVQSGARGNMMQINQIAGMRGLVANPKGEIIPRPVKSNYRDGLSVLEYFISQHG 859 Query: 779 ARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDR 838 ARKGLADTAL+TA SGYLTRRLVDV+QD++V E+DCGT G+ + D L Sbjct: 860 ARKGLADTALRTAESGYLTRRLVDVSQDVIVREEDCGTKAGLPIRVAERDNDGNLVLVKA 919 Query: 839 VLG----RVTAEDVLKPGTADI-LVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFG 893 G R+ A DV+ P L R+ L + L + V+ VK RSV++C++ G Sbjct: 920 ADGGPYSRLLAADVIDPADGQTVLYKRDDALSMDVLNDLVAHGVEEVKCRSVLTCESKRG 979 Query: 894 VCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASR-AAAESSIQV 952 VCA CYG LA +++ GE +G++AAQSIGEPGTQLT+R+FH GG A+ + +V Sbjct: 980 VCAKCYGWSLATNKLVDVGETVGIVAAQSIGEPGTQLTLRSFHSGGVAAASDITQGLPRV 1039 Query: 953 KNKGSIKLSN-----------VKSVVNSSGKLVITSRNTELKLIDEFGRTKES-YKVPYG 1000 + +K V N G+ +I + + + E G K Y+V Sbjct: 1040 TELFEARTPKGEAPITEFAGSIKIVENDRGRQIILTPDADSGAPKEDGVIKPITYQVSKR 1099 Query: 1001 AVLAKGDGEQVAGGETVAN--WDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSS 1058 L DG+ + G + DP + I Q ++ Sbjct: 1100 VPLKVADGDHIKVGTQLVEGSVDPKKILTILGKRAAQVNIVEEVHTVYRSQGVDIHDKHI 1159 Query: 1059 LVVLDSAERTAGG 1071 V++ R Sbjct: 1160 EVIVHQMTRRVTI 1172 Score = 302 bits (772), Expect = 7e-80, Method: Composition-based stats. Identities = 128/336 (38%), Positives = 175/336 (52%), Gaps = 12/336 (3%) Query: 1060 VVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI-SSG 1118 V+ D R L +G G + + V + I G Sbjct: 954 VLNDLVAHGVEEVKCRSVLTCESKRGVCAKCYGWSLATNKLVDVGETVGIVAAQSIGEPG 1013 Query: 1119 DTLARIPQESGGT---KDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRL 1175 L SGG DIT GLPRV +LFEAR PK A + E +G + + +G++ + Sbjct: 1014 TQLTLRSFHSGGVAAASDITQGLPRVTELFEARTPKGEAPITEFAGSIKIVENDRGRQII 1073 Query: 1176 VITPVDGSDPYE--------EMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVH 1227 + D P E + K L V +G+ ++ G + +G P IL + G Sbjct: 1074 LTPDADSGAPKEDGVIKPITYQVSKRVPLKVADGDHIKVGTQLVEGSVDPKKILTILGKR 1133 Query: 1228 AVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKI 1287 A IV EV VYR QGV I+DKHIEVIV QM R+ TI+++G +D L GE V+ +R + Sbjct: 1134 AAQVNIVEEVHTVYRSQGVDIHDKHIEVIVHQMTRRVTIIDSGDTDLLPGELVDNARFRE 1193 Query: 1288 ANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGL 1347 NR + NG A L+GITKASLAT+S++SAASFQETTRVLTEAA++ K D+L+GL Sbjct: 1194 INRNIVKNGGRPAVGRPALMGITKASLATDSWLSAASFQETTRVLTEAALSEKVDDLKGL 1253 Query: 1348 KENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQ 1383 KENVI+G+LIPAGTG A +++ + Sbjct: 1254 KENVIIGKLIPAGTGLARYRNAVVEPDKAIRDTIYP 1289 Score = 186 bits (471), Expect = 7e-45, Method: Composition-based stats. Identities = 98/192 (51%), Positives = 132/192 (68%), Gaps = 16/192 (8%) Query: 13 KTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLC 72 FD I+I LA+ D IR WS GEVKKPETINYRT KPE+DGLF +IFGP +D+EC C Sbjct: 3 DVNAFDKIRIGLATADDIRGWSHGEVKKPETINYRTLKPEKDGLFGEQIFGPTRDWECAC 62 Query: 73 GKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPL 132 GKYKR++ +G++CE+CGVEVT+++VRRERMGHIELA+P HIWF K +PSR+G LL++ Sbjct: 63 GKYKRVRFKGIVCERCGVEVTRSRVRRERMGHIELAAPVTHIWFFKGVPSRLGYLLNVTP 122 Query: 133 RDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSM 192 +D+ERV+YF SY+V E + E++ + L DEFD++ I+ L + Sbjct: 123 KDLERVIYFASYMVTE-----------VNEDERHNDLPGLQDEFDSE-----IKRLEQRR 166 Query: 193 DLEQECEQLREE 204 D + E + E Sbjct: 167 DSDIEARAKKVE 178 >UniRef50_D1HEN1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Vitis vinifera RepID=D1HEN1_VITVI Length = 1565 Score = 797 bits (2059), Expect = 0.0, Method: Composition-based stats. Identities = 256/1279 (20%), Positives = 451/1279 (35%), Gaps = 202/1279 (15%) Query: 5 LKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGP 64 ++F + + + ++ + SPD IR S +++ ET KP+ GL R+ Sbjct: 3 MRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSET--TERGKPKPGGLSDPRLGTI 60 Query: 65 VKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRI 124 R + CE C + + GH+ELA P HI F+K++ S + Sbjct: 61 ---------------DRKMKCETCTANMAECP---GHFGHLELAKPMFHIGFMKTVLSIM 102 Query: 125 GLLL------------------------DMPLRDIERVLYFES------YVVIEGGMTNL 154 + +M + L + Sbjct: 103 RCVCFNCSKILADELTENVKWISKSKFANMKSLKLGHSLLHCKSEDHKFKQAQKIRNPKN 162 Query: 155 ERQQILTEEQYLDALE-------------EFGDEFDAKMGAEAIQALLKSMDLEQECE-- 199 ++IL + E E + GA+ + ++ M + E + Sbjct: 163 RLKKILDACKNKSKCEGGDEIETQALDSDEPVKKSRGGCGAQQPKLTIEGMKMIAEYKIQ 222 Query: 200 --------------QLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVL 245 + +++L+ K+++ +L +P+WMIL VLP+ Sbjct: 223 RKKNDDPEQLPEPVERKQQLSAERVLNVLKRISDEDCILLGLNPKYARPDWMILQVLPIP 282 Query: 246 PPDLRPLVPLDGGRFAT------------------SDLNDLYRRVINRNNRLKRLLDLAA 287 PP +RP V +D + DL +I N L+R A Sbjct: 283 PPPVRPSVMMDTSSRSEASLSVLVNDRLKLSMWLWDDLTHQLAMIIRHNENLRRQERNGA 342 Query: 288 PDIIVRNEKRMLQEAVDALLDNGRRGRA-ITGSNKRPLKSLADMIKGKQGRFRQNLLGKR 346 P I+ ++LQ V DN G+ T + RP+KS+ +K K+GR R NL+GKR Sbjct: 343 PAHIISEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKR 402 Query: 347 VDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI---------KAA 397 VD+S R+VIT P + + + G+P +AL L P + L + K Sbjct: 403 VDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTG 462 Query: 398 KKMVEREEAVV-----------------WDILDEVIREHPVLLNRAPTLHRLGIQAFEPV 440 K + RE+ + + + VL NR P+LH++ I Sbjct: 463 AKYIIREDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIK 522 Query: 441 LIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPII 500 ++ +L+ V + YNADFDGD+M +HVP + E + E LMM I+SP + P++ Sbjct: 523 IMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVM 582 Query: 501 VPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDAN 560 QD +LG +T+ + + + + G A +K R K Sbjct: 583 GIVQDTLLGCRKITKRDTFIEKDVFMNILMWWED---FDGKIPAPAILKPRPLWTGKQVF 639 Query: 561 GELVAK-TSLKDTTVGRAIL-----------WMIVPKGLPYSIVNQALGKKAISKMLNTC 608 ++ K +L T+ + I L + + + +++ Sbjct: 640 NLIIPKQINLLRTSAWHSESETGFITPGDTQVRIEKGELLAGTLCKKTLGTSTGSLIHVI 699 Query: 609 YRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIP----EKKHEIISEAEAEVAEI 664 + +G F + + ++G S+GI D + EK +E IS+A+ EV E+ Sbjct: 700 WEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKEL 759 Query: 665 QEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 724 Q + A + N ++KA D ++ N++ Sbjct: 760 IRAAQERQLEAEPGRTMMESFENRVNQVLNKARDD--------AGSSAQKSLSESNNLKA 811 Query: 725 MADSGARGSAAQIRQLAGMRGLM--------------------AKPDGSIIETPITANFR 764 M +G++GS I Q+ G G + ++ Sbjct: 812 MVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYL 871 Query: 765 EGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTP 824 GL ++F G R+GL DTA+KT+ +GY+ RRLV +D++V D + + Sbjct: 872 RGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQ 931 Query: 825 VIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRS 884 + G D D V D LK + + ++ + + Sbjct: 932 FLYGEDGM----DAVWIETQKLDSLKMKKGEFDRVFKYEIDDE------NWNPSYMLPEH 981 Query: 885 VVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRA 944 + + ++ GE IG +AAQSIGEP TQ+T+ TFH G +++ Sbjct: 982 RLIWNAQKTFKERLKIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKN 1041 Query: 945 AAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLA 1004 + ++ ++N + K+ S + LK + +TKE K A+ Sbjct: 1042 VTLGVPR-----------LREIINVAKKIKTPSLSVYLK--PDVSKTKERAKNVQCALEY 1088 Query: 1005 KGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDS 1064 E ++ W + D + + I + L ++ Sbjct: 1089 TTLRSVTQATEKISPWLLRIELNREMMLQDESAEDDVFLKKIEKVEWMLDTEGVNLLAVM 1148 Query: 1065 AERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGD--TLA 1122 + I + + G + + L +V DG ++ L Sbjct: 1149 CHEDVDARRTTSNHLI-----EVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILC 1203 Query: 1123 RIPQESGGTKDITG-GLPR 1140 G IT G+ R Sbjct: 1204 DTMTYRGHLMAITRHGINR 1222 Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 73/449 (16%), Positives = 143/449 (31%), Gaps = 98/449 (21%) Query: 984 LIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDG 1043 + + E V Y + G+ + + + T+ ++ Sbjct: 903 IQRRLVKAMEDIMVKYDGTVRNSLGDVIQF--LYGEDGMDAVWIETQKLDSLKMKKGEFD 960 Query: 1044 QTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPG 1103 + + D+ S ++ + K + LKI + Sbjct: 961 RVFKYEIDDENWNPSYMLPEHRLIWNAQKTFKERLKIESRFLQS------------LVAP 1008 Query: 1104 KAIVQLEDGVQISS---GDTLARIPQESGGTKDITGGLPRVADLFE-ARRPKEPAILAEI 1159 ++ I TL K++T G+PR+ ++ A++ K P++ + Sbjct: 1009 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1068 Query: 1160 SGIVSFGKETKGK---------RRLVITPVDGSDPYEEMIPKWRQLNV-----------F 1199 VS KE R V + P+ I R++ + Sbjct: 1069 KPDVSKTKERAKNVQCALEYTTLRSVTQATEKISPWLLRIELNREMMLQDESAEDDVFLK 1128 Query: 1200 EGERVE-----------------RGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYR 1242 + E+VE D +++ + G+ AV R +++E++ V Sbjct: 1129 KIEKVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVIS 1188 Query: 1243 LQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATY 1302 G +N +H+ ++ M Y Sbjct: 1189 FDGSYVNYRHLAILCDTMT----------------------------------------Y 1208 Query: 1303 SRDLLGITKASLAT--ESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAG 1360 L+ IT+ + + SF+ET +L +AAV + D LRG+ EN+++G+L P G Sbjct: 1209 RGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDFLRGVTENIMLGQLAPIG 1268 Query: 1361 TG-YAYHQDRMRRRAAGEAPAAPQVTAED 1388 TG A + + + A E + D Sbjct: 1269 TGDCALYLNDQMLQHAIELQLPSYMEGLD 1297 >UniRef50_C6UN03 DNA-directed RNA polymerase n=1 Tax=Candidatus Hodgkinia cicadicola Dsem RepID=C6UN03_HODCD Length = 1376 Score = 797 bits (2058), Expect = 0.0, Method: Composition-based stats. Identities = 453/1365 (33%), Positives = 682/1365 (49%), Gaps = 69/1365 (5%) Query: 17 FDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYK 76 ++ ++LASP+ + SWS+GE++ + ++ T KP GLFC +IFG + ECLC + Sbjct: 34 VRSVSLSLASPETVLSWSYGEIEHASSYDFATGKPVEGGLFCPKIFGSSNEGECLCD--E 91 Query: 77 RLKHRGVICEKCGVEVT-QTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDI 135 ++C CGVE+ + R R HI+LA+P H WF S + LL P + Sbjct: 92 PTADDEMVCAVCGVEMAVGWRCARSRFAHIDLAAPVVHAWFHGSALPILVLLTGQPTATL 151 Query: 136 ERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLE 195 +++ +++VV L QI+ + A G A++ LL E Sbjct: 152 LKLISCDAHVVRS-TTGGLIEGQIVDTDALRKAWSASSWR-QLVSGGLAVRDLLAKCRPE 209 Query: 196 QECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPL 255 ++ + KL K+++L+E FV S KP W L VLPVLP LRP+V L Sbjct: 210 -LVKRALALELAAAPPSAAAKLRKKLQLIEGFVASKAKPTWAALEVLPVLPASLRPMVML 268 Query: 256 DGGRFATSDLNDLYRRVINRNNRLKRLLD-LAAPDIIVRNEK----RMLQEAVDALLDNG 310 R A+SDLN+LY R+++ N + + D L D + +E R LQ +VDAL+DN Sbjct: 269 QADRCASSDLNELYSRIVSANRVVAAMYDALWRGDHVACDEVLDGLRALQRSVDALIDNT 328 Query: 311 RRGRA---ITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCG 367 R + TG + LKSL +++KGK+GRFRQ LLG+RVDYSGRSVI GP L+L++CG Sbjct: 329 SRSASEVRPTGRSSVALKSLTELLKGKRGRFRQTLLGRRVDYSGRSVIAPGPELKLYECG 388 Query: 368 LPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAP 427 LP+ MA ELFKPF+ KL L + K + + L EV PV+LNRAP Sbjct: 389 LPRAMAAELFKPFVRAKLMLTCGVRSASKLKLLTASRPELEARALCEVAEFWPVVLNRAP 448 Query: 428 TLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMST 487 TLH+L +QAF L + K I+LHPLVCA +NADFDGDQMAVHVPL+ EA+ EA ALM+ST Sbjct: 449 TLHKLSMQAFRARLTDSKVIRLHPLVCAGFNADFDGDQMAVHVPLSYEARAEALALMLST 508 Query: 488 NNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHAR 547 N+L PA+G IVP+QD+VLGLYYMT V AK + + + LH R Sbjct: 509 RNVLHPAHGMLAIVPTQDMVLGLYYMTV--VAAKRADVRFASYADVNAALMARAVGLHTR 566 Query: 548 VKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPK--GLPYSIVNQALGKKAISKML 605 V + A + ++T GR ++ +VP+ G Y+ AL K I K+ Sbjct: 567 V---------EFCASTDAGQVVIESTPGRLLVNELVPQACGFLYTTSMPALSKSEIIKLT 617 Query: 606 NTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQ 665 + G + V+F +++M GF +A SG S+ D+ K + A VA + Sbjct: 618 EDVLEVCGKREAVVFCEELMLLGFKHATLSGTSLACADLKACGYKQRALQSARRAVARLA 677 Query: 666 EQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMM 725 +G A R +WA A +V A+ ++ + S+ +M Sbjct: 678 PGA-AGFPNARRRRLAFAKVWADAVQKVHAAVDLDVARRDEL-----------QTSVQVM 725 Query: 726 ADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLAD 785 SGARG+ AQ+RQL G RG + G+ P+ A++R+GL+ ++F ST AR+GL D Sbjct: 726 LASGARGTPAQLRQLVGARGEVVGFGGTPCLMPVLASYRDGLSTAEFFYSTFAARRGLVD 785 Query: 786 TALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTA 845 T LKTA+SGYLTRRL++VA++ VTE DCG EG+ + + + ++LGR+ A Sbjct: 786 TVLKTASSGYLTRRLIEVAREYTVTELDCGEGEGLDV----DVTTDLARAKHKLLGRLVA 841 Query: 846 EDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLAR 905 + V++ + +L N ++ + LL +V++RS ++C + GVCA CYG +L+ Sbjct: 842 KRVVE--SGRLLADVNEIITRRCVGLLAGAGCASVRIRSPLTCLAESGVCAACYGVNLST 899 Query: 906 GHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGG----AASRAAAESSIQVKNKGSIKLS 961 G + GEA+GV+AAQSIGEPGTQLT+RTFH G S A + + G I + Sbjct: 900 GKMAKLGEAVGVLAAQSIGEPGTQLTLRTFHGAGQAERVQSAQANAAHVVAACDGVISIQ 959 Query: 962 NVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWD 1021 N+ V +G +V+ + ++ E E + GA + DGE+V G + Sbjct: 960 NLACVRTLAGDVVVAGSRAVISVVSERAPPAE-HVACRGARVLVADGERVHRGRVLCVLY 1018 Query: 1022 PHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIV 1081 ++ G + ++ G RQ D TGL+ + SA+ +R Sbjct: 1019 ATDERYVSLAFGSLHLEGVLCGVNAKRQLDAETGLTRFDLTASAQDGRQRVSVRSGFC-- 1076 Query: 1082 DAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITG--GLP 1139 + + + + G +S D + ++ I GL Sbjct: 1077 ------------GVAYELSSKLFSSLLAGAGAAVSVFDQVFSRQRQRPRPASIAQLEGLS 1124 Query: 1140 RVADLFEARR-PKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNV 1198 +++ LF+ + + A +G + G V+ P + + R+ Sbjct: 1125 KLSKLFDNQAGDVAVGMTAPEAGWLRAGDSAPDGCVCVMDPDE--PAKWPAVCYVRRPLH 1182 Query: 1199 FEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVR 1258 R+ERGD I+ G L G V++VQ ++ QGV +N KHIEV++R Sbjct: 1183 AACVRLERGDAIAPGDVDMSAFASLHGFDRFANLFVDKVQQLFDYQGVSLNSKHIEVVLR 1242 Query: 1259 QMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATES 1318 QM A + AGS+ GE V + + N A G V AT R ++ + A S Sbjct: 1243 QMTDTAVVTGAGSTALKPGEVVAWRLLAETNALALAGGGVAATGLRRVVSVADACANHAS 1302 Query: 1319 FISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGY 1363 +S+ SF + L E ++G + + +K+++I+GRL P GTG+ Sbjct: 1303 LLSSISFYGAVKTLAELVISGGKHSVSAIKDHIIMGRLAPVGTGF 1347 >UniRef50_A7HNY1 DNA-directed RNA polymerase subunit beta' n=5 Tax=Bacteria RepID=RPOC_FERNB Length = 1650 Score = 797 bits (2058), Expect = 0.0, Method: Composition-based stats. Identities = 444/1228 (36%), Positives = 644/1228 (52%), Gaps = 134/1228 (10%) Query: 151 MTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNE-TN 209 T +++ Q++T++ Y + + +A+ GA AI+ LL+ +DLE ++ EL + Sbjct: 433 ETGIKKGQVITQQDYEAYSRIYPGKIEAETGAMAIKKLLEKIDLEVMKAEIEAELKKIPK 492 Query: 210 SETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLY 269 S + KKL K++K+++ + S KPEWM+L LPV+PP++RP++ +DGGRFAT+DLNDLY Sbjct: 493 SSVRAKKLLKKMKIVKDLIDSQTKPEWMVLEALPVVPPEIRPMIQIDGGRFATTDLNDLY 552 Query: 270 RRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLAD 329 RRVI RNNRLK+LL++ AP++IVRNEKRMLQEAVD L+ NG+ G+A N R LKSL D Sbjct: 553 RRVIMRNNRLKKLLEMNAPEVIVRNEKRMLQEAVDNLIFNGKIGKAYVDRNGRQLKSLTD 612 Query: 330 MIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKL---- 385 +I+GK+GRFR+NLLGKRVDYSGR+VI VGP+L++H+CGLPKKMALELF+PF+ +L Sbjct: 613 LIRGKKGRFRRNLLGKRVDYSGRAVIVVGPHLKIHECGLPKKMALELFEPFVIAELSKEE 672 Query: 386 ELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGK 445 T +K +K ++RE+ W+ L++VI+ VLLNRAPTLHR+ IQAFEP LIEG Sbjct: 673 NTEAPQTKVKKYRKELQREDPKAWEKLEKVIQGRVVLLNRAPTLHRMSIQAFEPKLIEGN 732 Query: 446 AIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQD 505 AIQLHPLVC +NADFDGDQMAVH+PL+ AQ EAR LM+S NI+SPA+G+PI +P +D Sbjct: 733 AIQLHPLVCPPFNADFDGDQMAVHLPLSPAAQAEARLLMLSRYNIISPAHGKPISMPGKD 792 Query: 506 VVLGLYYMTRDCVNAKG-----EGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDAN 560 +V G+YY+T N P+EAE Y G LH + ++I + Sbjct: 793 IVAGVYYLTMVDKNYDKIEPENIKWKFANPEEAELAYEFGFIKLHEPIIIKIND------ 846 Query: 561 GELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIF 620 TT GR I I+P+ L N+ GK I ++ ++ G+ T Sbjct: 847 -------KAIKTTFGRVIFNSILPEELR--DYNKTFGKNGIKDVVYKTFKTHGIDRTADL 897 Query: 621 ADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYN 680 D I GF YA SG ++ + D +I KK+EII+ A ++ I++ + GL++ E+Y Sbjct: 898 LDSIKDLGFHYATISGLTISLKDFMISPKKNEIITNAMKKIEYIEKLYDDGLLSDEEKYK 957 Query: 681 KVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQL 740 + I IW + V + L FN +Y+M DSGARG+ Q++QL Sbjct: 958 ETIKIWTETTNLVQEETYRYLGEN-------------PFNPVYIMVDSGARGNKDQLKQL 1004 Query: 741 AGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRL 800 +GMRGLMA P G IE PI +NFREGL+VL++FISTHGARKG ADTAL+T+++GYLTRRL Sbjct: 1005 SGMRGLMADPSGRTIEIPIISNFREGLSVLEFFISTHGARKGSADTALRTSSAGYLTRRL 1064 Query: 801 VDVAQDLVVTEDDCGTHEGIMMTPVIEGGD-VKEPLRDRVLGRVTAEDVLKPGTADILVP 859 VDV Q +VVTE DCGTHEG+ T + + V E + D + GRV A+D+ +PGT +ILV Sbjct: 1065 VDVVQSVVVTEPDCGTHEGVRATLLKSSDNFVVEKIEDFIFGRVLAKDIYEPGTGNILVN 1124 Query: 860 RNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIA 919 NT ++ + + + + DL+ G+I + Sbjct: 1125 PNTNKSYTRDTVILDEDAKFLSNYKKRVNVVEESIL------DLSVGNIPE----VYAEL 1174 Query: 920 AQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRN 979 A+ I P G V+ + NVK I Sbjct: 1175 AEDIDTPS-----------GLIPSETEIDWDVVRKLRDAGIKNVK-----IKLYPIVGSV 1218 Query: 980 TELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTD 1039 +++ + R K+ V + D Sbjct: 1219 ISEEIVWDKDRKKQIA---------------VEEEQV----------------------D 1241 Query: 1040 MIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQY 1099 + + + + + +R L G G D+ Sbjct: 1242 VALAKLLEENNID------------SVYVRPEIYVRSVLTCESEHGVCAKCYGLDLSNHK 1289 Query: 1100 FLPGKAIVQLEDGVQI-SSGDTLARIPQESGG---TKDITGGLPRVADLFEARRPKE--P 1153 + V + I G L +GG T DIT GLPRV +LFEAR+ + Sbjct: 1290 VVTVGESVGIIAAQSIGEPGTQLTMRTFHTGGIATTADITQGLPRVEELFEARKKTKDPE 1349 Query: 1154 AILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDG 1213 I +++ G V + K+ + + +E +P ++NV G++V G ++ G Sbjct: 1350 GIFSKVKGTVVDISNDEPKK--IYIQDELGGIHEYEVPSRVRVNVTVGQKVLPGQSLTSG 1407 Query: 1214 PEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD 1273 IL G Y++ E++ VY QGV I+DKH E+I+RQML KA ++++G ++ Sbjct: 1408 SLKVRKILEELGPEETATYLLKEIKRVYVQQGVDIHDKHFELIIRQMLNKAEVIDSGDTE 1467 Query: 1274 FLEGEQVEYSRVKIANRELEANGKVGATYSRDLLG--ITKASL--ATESFI--SAASFQE 1327 FL G+ V S + NRE+ + ++G + K + + I AA +E Sbjct: 1468 FLPGDLVPISLLNKVNREIMEGNAKVEMNRKKIIGRELAKHIIVKNEDGEIVELAAEGEE 1527 Query: 1328 TTRVLTEAAVAGKRDELRGLKENVIVGR 1355 T L E + G+KE VI+ Sbjct: 1528 VTEELLEKLIE------YGIKEVVIMNH 1549 Score = 176 bits (446), Expect = 5e-42, Method: Composition-based stats. Identities = 92/236 (38%), Positives = 135/236 (57%), Gaps = 9/236 (3%) Query: 10 AQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYE 69 + + + ++ + +ASP++IR+WS GEVKK ETINYRTFKPERDGLFC RIFGPVKDYE Sbjct: 2 SSSFKRKIASVNVRVASPEVIRNWSNGEVKKAETINYRTFKPERDGLFCERIFGPVKDYE 61 Query: 70 CLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLD 129 C CGKY K+ G +CEKCGV+V RR R GHIELA+P H+W+LK+ PS I LLD Sbjct: 62 CACGKYSGKKYEGTVCEKCGVKVESKDARRRRFGHIELAAPVTHVWYLKNSPSVIATLLD 121 Query: 130 MPLRDIERVLYFESY-------VVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGA 182 M ++DIE ++YF S +V + T + IL + +Y +++ E Sbjct: 122 MTVKDIETIVYFGSRRVNERVVIVTDPKNTPFIKGSILNQTEYEIYAQKWDFEVSPAYIV 181 Query: 183 EAIQ-ALLKSMDLEQECEQLREELNETNSETKRKKLTK-RIKLLEAFVQSGNKPEW 236 + + L+ +D E + + + K +++ +K+ V + + Sbjct: 182 KEPRSPLVSDIDGEVHIKHEKTHTDRELYWIVVKNISRTELKVYTGMVLNFKDNDQ 237 Score = 158 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 116/559 (20%), Positives = 193/559 (34%), Gaps = 99/559 (17%) Query: 916 GVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVI 975 G + A+ I EPGT + +++ ++ + + K V ++ Sbjct: 1106 GRVLAKDIYEPGT----GNILVNPNTNKSYTRDTVILDEDAKFLSNYKKRVNVVEESILD 1161 Query: 976 TSRNTELKLIDEFGRTKE--SYKVPYGAVLAKGDGEQVAG--GETVANWDPHTMPVITEV 1031 S ++ E + S +P + D + V + N P++ V Sbjct: 1162 LSVGNIPEVYAELAEDIDTPSGLIPSETEI---DWDVVRKLRDAGIKNVKIKLYPIVGSV 1218 Query: 1032 SGFVRFTDMIDGQTI---TRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDV 1088 D + I Q D + +R L G Sbjct: 1219 ISEEIVWDKDRKKQIAVEEEQVDVALAKLLEENNIDSVYVRPEIYVRSVLTCESEHGVCA 1278 Query: 1089 LIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDTLARIPQESGG---TKDITGGLPRVADL 1144 G D+ + V + I G L +GG T DIT GLPRV +L Sbjct: 1279 KCYGLDLSNHKVVTVGESVGIIAAQSIGEPGTQLTMRTFHTGGIATTADITQGLPRVEEL 1338 Query: 1145 FEARRPKE--PAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE 1202 FEAR+ + I +++ G V + K+ + + +E +P ++NV G+ Sbjct: 1339 FEARKKTKDPEGIFSKVKGTVVDISNDEPKK--IYIQDELGGIHEYEVPSRVRVNVTVGQ 1396 Query: 1203 RVERGDVISDGPEA---------PHDILRLRGVHAVTRY--------------------- 1232 +V G ++ G P + Y Sbjct: 1397 KVLPGQSLTSGSLKVRKILEELGPEETATYLLKEIKRVYVQQGVDIHDKHFELIIRQMLN 1456 Query: 1233 ---------------------IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATI-VNAG 1270 ++N+V K+ ++I R++ + + G Sbjct: 1457 KAEVIDSGDTEFLPGDLVPISLLNKVNREIMEGNAKVEMNRKKIIGRELAKHIIVKNEDG 1516 Query: 1271 SSDFL--EGEQVEYSRVKIANRE----------------LEANGKVGATYSRDLLGITKA 1312 L EGE+V ++ + K Y R LL IT+A Sbjct: 1517 EIVELAAEGEEVTEELLEKLIEYGIKEVVIMNHDKEKEVYQILPKETVKYRRRLLRITQA 1576 Query: 1313 SLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRR 1372 SL E ++SAASFQ+T +VLT+AA+ G D L+GLKENVIVG+LIPAGTG+ Sbjct: 1577 SLEYEGWLSAASFQQTQQVLTDAAIKGAVDYLKGLKENVIVGQLIPAGTGFDIF------ 1630 Query: 1373 RAAGEAPAAPQVTAEDASA 1391 ++ + P++ E+ Sbjct: 1631 -SSVQYEETPRLAKEEKEK 1648 >UniRef50_B0WFY1 DNA-directed RNA polymerase n=5 Tax=Diptera RepID=B0WFY1_CULQU Length = 1303 Score = 797 bits (2057), Expect = 0.0, Method: Composition-based stats. Identities = 268/1497 (17%), Positives = 487/1497 (32%), Gaps = 321/1497 (21%) Query: 5 LKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFK-PERDGLFCARIFG 63 + + ++ + + S ++I+ S V N + P G+ R+ Sbjct: 3 KEQFREADVIKKISHVSFGIDSAELIQQESHLHVVAKNLYNQDANRTPVSYGVLDRRMGV 62 Query: 64 PVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSR 123 KD C+ C + G+I LA P H+ ++ + Sbjct: 63 SQKD---------------ATCDTCKKGLNDC---VGHFGYINLALPVFHVGHFRATITI 104 Query: 124 IGLLLDMPLRDIERVLYFESY--VVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMG 181 + + + R + + + + + ++ L ++ I ++ G Sbjct: 105 LQSICKICSRVMLKEDEKKQFSARLTNPNLSYLAKKSIHSQVLKKAKKNTKCPCCGCLNG 164 Query: 182 --------------------------AEAIQALLKSMDLEQECEQ------LREELNETN 209 A+ +L +++ +E Q L +ELN Sbjct: 165 PVKKGAGLMKIVHEPFRGKKATDPLVTSALDEMLGAIEGNRELSQTVGPSSLIKELNPLE 224 Query: 210 SETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGG-RFATSDLNDL 268 K + K L + P +I+T + V P +RP V + DL Sbjct: 225 VLDLFKNIPKSDIPLLGMTSPESNPADLIVTRVFVPPVCIRPSVVSEVKAGTTEDDLTMK 284 Query: 269 YRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLA 328 ++ ++ + + + +++ + LQ ++ G ++ K+P + + Sbjct: 285 QSEILLISDVITKHMMSGGKIELIQEDWDYLQLHCALYFNSELSGIPLSLMPKKPTRGIV 344 Query: 329 DMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELR 388 +KGKQGRFR NL GKRVD+S R+VI+ P L +HQ G+P ++A L P + Sbjct: 345 QRLKGKQGRFRGNLSGKRVDFSARTVISPDPNLMIHQVGVPDRVAKILTFPERVNTANIN 404 Query: 389 GLATTIKAA-----------------KKMVE--REEAVVWD------ILDEVIREHPVLL 423 + IK KK + + V D + ++ VL Sbjct: 405 RMRQLIKNGTEKHPGANYVQQKGSAFKKYLAYGNRDKVAQDLKCGDIVERHLMDGDVVLF 464 Query: 424 NRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARAL 483 NR P+LH+L I + + + + C YNADFDGD+M +H+P T EA+ EA L Sbjct: 465 NRQPSLHKLSIMCHVAKVQPQRTFRFNECACTPYNADFDGDEMNLHLPQTEEARAEALVL 524 Query: 484 MMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLAS 543 M + +N+++P NGE +I +QD + G Y +T+ E ++ + Sbjct: 525 MGNKSNLVTPRNGELLIAATQDFITGGYLLTQKDQFLTREQVMQLAACMLSGPDANMEID 584 Query: 544 LHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISK 603 L K I + K G+ + LK + K I K Sbjct: 585 LP---KPAIIKPRKLWTGKQIFSLILKPNRHSVVNANLSTKGRNY-------TTGKDIRK 634 Query: 604 MLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAE 663 +L E+K +++ + E Sbjct: 635 LL------------------------------------------EEKQKLLENGYSRCDE 652 Query: 664 IQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIY 723 + + G + A + M+ L + + + NS Sbjct: 653 YIAEMKKGTLQCQPGC--------TAEQTLEAVMLKELSSIRELAAKACFRELHPTNSAL 704 Query: 724 MMADSGARGSAAQIRQLAGMRGLMAKPDGSI--------------------IETPITANF 763 +MA SG++GS I Q+ G A + + +F Sbjct: 705 IMAQSGSKGSNINISQMIACVGQQAINGKRVPNGFEDRALPHFEKFSKIPAARGFVQNSF 764 Query: 764 REGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMT 823 GL ++F T R+GL DTA+KTA +GYL RRLV +DLVV D + + Sbjct: 765 YSGLTPTEFFFHTMAGREGLVDTAVKTAETGYLQRRLVKCLEDLVVQYDGTVRNAIGEVV 824 Query: 824 PVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNT--------------------- 862 G D +P+ V + + ++ R+ Sbjct: 825 EFTYGADGLDPVFMEVKNKPVDIERQFMHVRNMFPCRDEAPLRGAEILETGDKILQTAEF 884 Query: 863 -----LLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHC-----------YGRDLARG 906 ++ + L++ V+S + D + RD Sbjct: 885 DGCRADFRKECLEFLKKFGERLHSVQSRYNTDAKVSLEVERTTPGQLKKFLMQVRDKYNK 944 Query: 907 HIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSV 966 I G A+G +AAQSIGEPGTQ+T++TFH G AS + ++ + + + Sbjct: 945 AITEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIVEIINATKAISTPI 1004 Query: 967 VNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMP 1026 + + NT ++ + E T+ + Sbjct: 1005 IT-----AEIADNTSMEFARKVKARIEK--------------------TTLGEISSYIEE 1039 Query: 1027 VITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGN 1086 V F+ +K+ + Sbjct: 1040 VYKSDDCFLL-----------------------------------------IKLDLDRIR 1058 Query: 1087 DVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFE 1146 + + +Y + + ++ V++ + P + + + L R Sbjct: 1059 VLGLEVNAETIRYSICTSKLKLKQENVEVYGPSLIIIRPDPTKHSHALNAELQR------ 1112 Query: 1147 ARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVER 1206 +L+ I +V G + + + G Y+ + + +V V Sbjct: 1113 --------LLSAIPNVVVAGLPQVSRAVIAVDDAHGPPTYKLCVEGYGLRDVMATYGVVG 1164 Query: 1207 GDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATI 1266 ++ G+ A I+NE+ DV G+ ++ +HI ++ QM + + Sbjct: 1165 A---RTKSNNILEVYVTLGIEAARTTIMNEITDVMEGHGMSVDHRHIMLLASQMTSRGEV 1221 Query: 1267 VNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLAT--ESFISAAS 1324 LGIT+ LA ES + AS Sbjct: 1222 ----------------------------------------LGITRHGLAKMRESVFNLAS 1241 Query: 1325 FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAA 1381 F++T L +AA G+ D + G+ E +I+G GTG E Sbjct: 1242 FEKTADHLFDAAYYGQTDSIDGVSERIILGMPAAIGTGLFKLIHNHTETKLDEMVEP 1298 >UniRef50_D2VMG0 RNA polymerase II largest subunit n=1 Tax=Naegleria gruberi RepID=D2VMG0_NAEGR Length = 1650 Score = 796 bits (2055), Expect = 0.0, Method: Composition-based stats. Identities = 280/1529 (18%), Positives = 513/1529 (33%), Gaps = 229/1529 (14%) Query: 7 FLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVK 66 F + D I+ + +P ++ S E+ ET P+ GL R+ Sbjct: 5 FTYSPVDLSSIDRIQFGILNPHVVEKMSACEIIHAET--EEKGLPKEGGLMDLRMGT--- 59 Query: 67 DYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGL 126 + + C CG V++ GH+ + PT +I FLK++ Sbjct: 60 ------------VNSALSCMTCGCGVSECP---GHFGHVNIH-PTFNILFLKTIV----K 99 Query: 127 LLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQ 186 +L R+L+ + + +++ E L +++ D G IQ Sbjct: 100 ILKCTCVHCSRLLFNRNTPEFKRIQQIANKRKRFNELMKLKPMDKCM--IDDYTGCGGIQ 157 Query: 187 ALLKSMD-----LEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTV 241 + + ++++E+ + K+++ + L F + PEWMILT Sbjct: 158 PKISKNQLSITQIFPNSNEIKQEIKAESVLQIFKRISTQDLELLGFDSINSNPEWMILTC 217 Query: 242 LPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQE 301 LPV PP +RP V A DL +I N +++L +P + + ++LQ Sbjct: 218 LPVPPPHVRPSVMHGLNDKAEDDLTHKLADIIKSNATIQKLSKSGSPQHYLDDMIKILQY 277 Query: 302 AVDALLDNGRRGRAI-TGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360 ++N G + T N R LKSL +KGK+GR R NL+GKRVD+S R+VIT P Sbjct: 278 HCATYMNNEISGVPMSTTKNGRMLKSLRQRLKGKEGRVRGNLMGKRVDFSARTVITPDPT 337 Query: 361 LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAA------KKMVEREEAVVWD---- 410 + + Q G+P+ +A + P + + K V R++ D Sbjct: 338 IEIDQVGVPRTIARNMTVPEKVTPFNFERMNELVMNGPETYPGAKYVLRDDGTRIDLKFL 397 Query: 411 ---------------ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCA 455 I + VL NR P+LH++ + ++ +L+ V Sbjct: 398 SDRSTDQVQLQYGYTIERHLQDGDVVLFNRQPSLHKMSMMGHRVKVMPYSTFRLNLSVVT 457 Query: 456 AYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTR 515 YNADFDGD+M +H+P +L+ + E LMM NI++P + P+I QD +L TR Sbjct: 458 PYNADFDGDEMNLHLPQSLQTKTELLELMMVPKNIITPQSHRPLIALVQDTLLAGSKCTR 517 Query: 516 DCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVG 575 V + + M+ +G + A +K + K L+ + Sbjct: 518 RDVYIEKDVMM---NCLMYLQDFNGQLPVPAILKPKPLWTGKQLFSLLLPSIDYYGISST 574 Query: 576 RAILW-----------------MIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTV 618 +I L I+++ + +++ G + Sbjct: 575 HDDEVGDLKHLDDHLPEFDTGIIISNGELLTGILDKKSLGSSHGSLIHIIVNDKGTQEGK 634 Query: 619 IFADQIMYTGFAYAARSGASVGIDDMVIP----EKKHEIISEAEAEVAEIQEQFQSGLVT 674 F Q + + + G SVGI D + +K EII+ AE EV +I +Q +GLVT Sbjct: 635 KFLGQCQHVLNYWLLQHGFSVGIGDTIADGETVKKIEEIINNAEREVKKIVKQAHNGLVT 694 Query: 675 AGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSA 734 A +++ L ++ NSI M SG++GS Sbjct: 695 AEPG--------RTVEQSFERSINSTLNAAREDAGMHVKKSLKDSNSIKSMVTSGSKGSY 746 Query: 735 AQIRQLAGMRGLM--------------------AKPDGSIIETPITANFREGLNVLQYFI 774 I Q+ G G + ++ GL ++F Sbjct: 747 LNISQIIACVGQQNVEGKRVPFGFKNRTLPHFSTDDHGPESRGFVANSYLRGLTPQEFFF 806 Query: 775 STHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEP 834 T G R+GL DTA+KTA +GY+ RRLV +D+ V D + + G D +P Sbjct: 807 HTMGGREGLIDTAVKTAETGYIQRRLVKAMEDVKVNYDGTVRDASGNIIQFLYGEDGMDP 866 Query: 835 LR--DRVLGRVTAEDVLKPGTADILVPRN---------TLLHEQWCDLLEENSVDAVKVR 883 ++ + ++ D + + + + L + + + K++ Sbjct: 867 IKLESQSFEMLSLSDEIFEEKYKWSTKLEDHNIPESDLNEISLDFANYLMKLNDEYKKLQ 926 Query: 884 SVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASR 943 D + + + ++ + + + + ++ + Sbjct: 927 EYRHLVRDE-ILQSVDSKIVFPVNLSRLIKRVQREYGRKHSTFNNSSDLNPLYVIKKVNS 985 Query: 944 AAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKV--PYGA 1001 E I + + +++ S L + + + R Y + Sbjct: 986 TCEELLIIKGKDKLSEEAQRNAILLFSIFLKFSLASKVVMNELNLTRESLEYLLGEVKYT 1045 Query: 1002 VL--AKGDGEQV--AGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTD------ 1051 L GE V +++ +G + + D Sbjct: 1046 FLNGLVQPGEMVGCIAAQSIGEPATQMTLNTFHNAGVSSKNVTLGVPRLKELLDVSRNIK 1105 Query: 1052 ----------ELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFL 1101 + + +V + E + G R I D + +I + L Sbjct: 1106 TPGLTIYLKNDNDCEIAKMVKEELEYSNLGSITRSTQIIYDPDIFNSVIESDQFFIREML 1165 Query: 1102 PGKAI--------------------VQLEDGVQISSGDTLARIPQESGGTKDITGGLPRV 1141 K I L + + + D + L + Sbjct: 1166 EEKTIDPNTFSPWSLRFVLDREMMSEHLNMSQIANIIKQEFQNDISCFYSDDNSEELILI 1225 Query: 1142 ADLFEARRPKEPAILAEISG--IVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVF 1199 + + + K E IV F K + ++ ++ + K + F Sbjct: 1226 IRIRNSEKSKSETEDDEEDSSMIVEFLKRLESNMLSQLSLKGHNNLKKVFYRKDENIKFF 1285 Query: 1200 EGERVERG---------------------DVISDGPEAPHDILRLRGVHAVTRYIVNEVQ 1238 + VE+ D + ++ ++ G+ A ++ E++ Sbjct: 1286 SNKGVEKKTRWSLETEGCDLLSVMSHPQVDFRNTLSNDVIEVEKVLGIEACRNLLMKELR 1345 Query: 1239 DVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKV 1298 V G +N +H+ ++ M + I Sbjct: 1346 KVIEFDGSYVNYRHLAILCDVMTQGGVIT------------------------------- 1374 Query: 1299 GATYSRDLLGITKASLAT--ESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRL 1356 +T+ LA + SF++T VL EAA D L+G+ NV+VG+L Sbjct: 1375 ---------AVTRHGLARSDNGPLMRCSFEQTVEVLVEAAQFSDVDTLKGVSANVMVGKL 1425 Query: 1357 IPAGTGYAYHQDRMRRRAAGEAPAAPQVT 1385 P GTG + P + + Sbjct: 1426 APIGTGTFDLVLDEQLLKETIQPTFMKAS 1454 >UniRef50_O21238 DNA-directed RNA polymerase n=3 Tax=Eukaryota RepID=O21238_RECAM Length = 1384 Score = 795 bits (2052), Expect = 0.0, Method: Composition-based stats. Identities = 437/1406 (31%), Positives = 708/1406 (50%), Gaps = 127/1406 (9%) Query: 19 AIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRL 78 IK++L P+ I S GEV +T+N +T++PE GLFC +IF +C Sbjct: 33 EIKLSLFDPEQILKKSSGEVCTSKTLNSKTYEPEDGGLFCNKIFKTNSKNNYICNVCSYR 92 Query: 79 KHRGVICEKCG--VEVTQTKVRRERMGHIELASPTAHIWFLKS-LPSRIGLLLDMPLRDI 135 + + C +CG ++ ++ ++ MGHIEL SP H W L++ + R+ + L+ +I Sbjct: 93 QSKPYRCLRCGSNTKLDKSNIQNLSMGHIELISPIPHPWLLRTKIIHRLAVGLN----NI 148 Query: 136 ERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLE 195 + ++ + +Q+ + Y + ++F K Sbjct: 149 YDYKEIDKILLTDPETIYNYFEQMDLLDVYFNLRNYLINDFIIK---------------- 192 Query: 196 QECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPL 255 + + + K+I+++ ++ +PEW L +PVL P RPL+ L Sbjct: 193 --KNKKNINNINIDKNIIYYAIKKKIRIITTLIRLKQRPEWFFLKRIPVLSPTYRPLMKL 250 Query: 256 DGGRFATSDLNDLYRRVINRNNRLKRL-------------------LDLAAPDIIVRNEK 296 D F SD+N LY+ +I RNN LK L +D D + K Sbjct: 251 DDKLFVASDINFLYQNIIERNNILKELLKRYSLEKIDRISSLFTEIIDEVKKDNPIIKGK 310 Query: 297 RMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIT 356 LQ+AV L+D+ IT N KSL + GK+GRFR+++LGKR+++SGR+VIT Sbjct: 311 INLQKAVTTLMDSSFIKGIITFKN----KSLIKRLSGKKGRFRKDILGKRINFSGRTVIT 366 Query: 357 VGPYLRLHQCGLPKKMALELFKPFIYGKLELRGL--ATTIKAAKKMVEREE--------A 406 GP L L+QCGLP ++ LELFKPFI K+ + T++K K + ++ Sbjct: 367 SGPRLHLNQCGLPIELVLELFKPFIILKMRDLNICSQTSLKNLKTYDDFKQILFNKFTIN 426 Query: 407 VVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQM 466 +V+ +++ +I +HPVLLNRAPTLHR+ IQ F P+LI KAIQLHPLVC+++NADFDGD M Sbjct: 427 LVFKLINSIISKHPVLLNRAPTLHRMNIQTFSPLLIYTKAIQLHPLVCSSFNADFDGDTM 486 Query: 467 AVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMV 526 A+++P TL +Q+E+R LMMS+ NI+SP+ EPII P+QD+V GLYY T + GEG + Sbjct: 487 AIYIPHTLRSQIESRVLMMSSTNIISPSTQEPIISPTQDIVFGLYYATVMYQGSIGEGRL 546 Query: 527 LTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKG 586 E + LH+ + + K ++ TT GR +L+ ++ + Sbjct: 547 YGDVNEIKNAINFLELDLHSPI------------SFKLDKDNVVLTTSGRILLYYLLLEF 594 Query: 587 LPYSI--VNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDM 644 + VN+ KK I ++ + L T DQIM GF YA ++G S+ +D+ Sbjct: 595 VNIDFKYVNKVFDKKEIVSLIKMISNLNNLNKTSFILDQIMSFGFYYAYKAGISLHKNDI 654 Query: 645 VIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTE 704 P K + + + +V + + F G+++ E+ ++++ W+ + ++ ++ ++ Sbjct: 655 NTPNLKELFVYKTKKKVEDDLKNFSRGIISIDEKSKRLLNEWSKCSSILANQILKDVIYT 714 Query: 705 TVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFR 764 +SIYM+ +SGARGS Q+RQL G+RGLM KP G I+E PI +NF+ Sbjct: 715 V----------PNRKSSIYMLINSGARGSMVQMRQLCGIRGLMIKPSGDILEIPIISNFK 764 Query: 765 EGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTP 824 EGL+V+ YF STHGARKG+ DT+LKTA SGYLTR+L A+DL +TE DCGT +GI+ Sbjct: 765 EGLSVVDYFNSTHGARKGVIDTSLKTAASGYLTRKLFYAAKDLFITEIDCGTRKGIIFGN 824 Query: 825 VIEGGD--VKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKV 882 + D + ++GR+ ++ P T +ILV + ++ +L+ + ++ V Sbjct: 825 LKYQRDGYKIDSFYKNIVGRILVRNIKNPYTGEILVKKGLIVTNLVLNLIIKFGIEFVVT 884 Query: 883 RSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAAS 942 RS ++C+T G+C CYG I++ E+IG+IAAQSIGEPGTQLTMRTFH GG Sbjct: 885 RSPMTCETRNGICRKCYGSIGNNNEIVSLEESIGIIAAQSIGEPGTQLTMRTFHQGGTVL 944 Query: 943 RAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITS-RNTELKLIDEFGRTKESYKVPYGA 1001 R A E+ + + + N K V + I RN+++ L D SYK+PYGA Sbjct: 945 RGANENRLYSSYNARVLIYNRKVVKGINSITKINIHRNSKILLFDLNYSLLISYKIPYGA 1004 Query: 1002 VLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVV 1061 L DG ++ G + +++ +T+P+++ G V F + + + D ++G+ Sbjct: 1005 TLYVDDGSIISKGTLLFDYNSYTIPILSNYKGNVFFQEKNQKISSVKVRDSMSGI----- 1059 Query: 1062 LDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTL 1121 ++ + + + + + ++ + + + GD + Sbjct: 1060 ------------VKSNFNLGINNFKRWFLVNNSLKIENINMSQDLLNIMENSIVKKGDVI 1107 Query: 1122 ARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVD 1181 RI + +DITGGL +++ LFE + + ++ + G + F E + ++ Sbjct: 1108 GRINISNKIVQDITGGLSKISKLFECIQ-NQSCLITPVEGYIKFNYEPSVSKFVLYVLTK 1166 Query: 1182 GSDPYEEM------IPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVN 1235 +++ + + L V + + V +GD++S G +I + +++ Sbjct: 1167 DEKTKKDLLVRIGTVHELDNLFVRQNDYVYQGDLLSSGIVPIREIAEKIEFESSFYHLLE 1226 Query: 1236 EVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAG-SSDFLEGEQVEYSRVKIAN----- 1289 ++Q Y GV IN KHIEVI+ QM K T ++ D E + N Sbjct: 1227 QIQSTYFENGVTINQKHIEVIISQMFFKITCMDLYLDKDHFINETKTSEIKEKINIKYKP 1286 Query: 1290 ------------RELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAV 1337 L G + L GI++ + SF+S+ASFQ+T++VLTEAA+ Sbjct: 1287 TRFNKDFFCHQSIRLLVMGLLPIKGKISLGGISQIGVLGGSFLSSASFQKTSKVLTEAAL 1346 Query: 1338 AGKRDELRGLKENVIVGRLIPAGTGY 1363 D L G + N+ G L+P GTG Sbjct: 1347 WKGFDPLIGAQPNLFFGSLMPIGTGL 1372 >UniRef50_B7G2E6 DNA-directed RNA polymerase n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7G2E6_PHATR Length = 1281 Score = 794 bits (2051), Expect = 0.0, Method: Composition-based stats. Identities = 275/1451 (18%), Positives = 473/1451 (32%), Gaps = 316/1451 (21%) Query: 48 TFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIEL 107 + KP G R+ + + C C ++ G+I L Sbjct: 3 SRKPAHGGCLDPRLG---------------VSDKVSACATCKRKLVDC---AGHFGYIRL 44 Query: 108 ASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLD 167 A P HI FL+ LL + RVL ES + L++ Sbjct: 45 ALPVFHIGFLRHTLH----LLQCVCKTCSRVLMPESDRQKHLSRMRSPKTDALSKAALFK 100 Query: 168 ALEEFGDEFDAKMGAEA----------------IQALLKSMDLEQECEQL---------- 201 + E + + K + E E ++L Sbjct: 101 KVVEKCKKVRVCPHCGGHNGTVKKITGVPTLKIVHERYKGRNAEDELDELIANLEVSLKM 160 Query: 202 --------------REELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPP 247 E+L T + ++ + +PE +IL + V P Sbjct: 161 NKDVGTAISGSSLPYEDLLPTRALEIFTHISDDDCEVLWIDPLIGRPETLILQSILVPPV 220 Query: 248 DLRPLVPLD-GGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDAL 306 +RP V +D GG DL + +I+ N L+ L + E LQ V Sbjct: 221 PIRPSVAMDVGGGSNEDDLTVKLQEIIDVNVALELALMKGPQTRTIMEEWDFLQVQVAQY 280 Query: 307 LDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQC 366 ++ G +P++ L +KGKQGRFR NL GKRVD+S R+VI+ P LR+ Q Sbjct: 281 INGEMPGL-QRPIGSKPMRGLCQRLKGKQGRFRGNLSGKRVDFSARTVISPDPNLRVDQV 339 Query: 367 GLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWD---------------- 410 G+P+++A + P + + L ++ + + Sbjct: 340 GVPERVAKTMTYPERVSRYNIEKLRQRVRNGPDVHPGANLIRMKDGSFVKSLSFGDRELV 399 Query: 411 ---------ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADF 461 + + + VL NR P+LH++ I A ++E K + + VCA YNADF Sbjct: 400 AKNLRYGDVVERHMEDDDVVLFNRQPSLHKVSIMAHRAKVMEWKTFRFNTCVCAPYNADF 459 Query: 462 DGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNA 520 DGD+M +H+P T EA+ EA LM +N+ +P NGEP++ SQD + Y +T RD Sbjct: 460 DGDEMNMHLPQTEEARTEASLLMGVKHNLTTPRNGEPLVAASQDFLSASYMLTQRDRFFT 519 Query: 521 KGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTS------------ 568 + + L ++ K G ++ Sbjct: 520 REQFCQLVSYY--SDASEDIDIPFPTILRPVELWTGKQVFGMMLRPNRKSSVLVSFENKE 577 Query: 569 LKDTTVGRAILWMIVPKGLPYSIVNQALGKKAIS-----KMLNTCYRILGLKPTVIFADQ 623 TT +V+ + KK+I +L R G+ D+ Sbjct: 578 KNYTTNKYFCKNDGWVAFRNSELVSGNIAKKSIGDGSKSGLLYILLRDCGVHEAASCMDR 637 Query: 624 IMYTGFAYA-ARSGASVGIDDMVIPEK----KHEIISEAEAEVAEIQEQFQSGLVTAGER 678 + G S+GI D+ + KH I+SE + + + G + Sbjct: 638 WAKFCSRFMGGHRGLSIGISDVTPSARLRDIKHGILSEGYKK-ERLITPMKQGRLELRPG 696 Query: 679 YNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIR 738 + + + + + L + N+ +MA+ G++GS I Sbjct: 697 CDLLQS--------LEEILNGILGRLRESAGQEAMKALPWTNTPRIMAECGSKGSPLNIS 748 Query: 739 QLAGMRGLMAKPDGSI--------------------IETPITANFREGLNVLQYFISTHG 778 Q+ G A I + + +F GL ++F G Sbjct: 749 QMISCVGQQAVGGMRIQDGFVNRCLPHFEYHSLIPSAKGFVANSFYTGLTATEFFFHAMG 808 Query: 779 ARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDR 838 R+GL DTA+KTA +GY+ RRL+ +DL + D + + G D P Sbjct: 809 GREGLVDTAVKTAETGYMARRLMKALEDLSLQYDSSVRNSENTVVQFTYGDDGLNPNMME 868 Query: 839 VLGRVTAEDVLKPGTADILVPRNTL---------------LHEQWCDLLEENSVDAVKVR 883 R + L+ + ++ LL V ++R Sbjct: 869 NNDRPVDFERLRLHISQTTPCPTEDCLSAAALSTTVEKKLAEPRFQALLPTGRVFMQEIR 928 Query: 884 SVVSCDTDFGVCAHCYGR---------DLARGHIINKGEAIGVIAAQSIGEPGTQLTMRT 934 + + + D + GEA+G I AQSI EPGTQ+T++T Sbjct: 929 DFFNSLAENQNSRMTETQLELLLTEALDKCMLAYVEPGEAVGAIGAQSISEPGTQMTLKT 988 Query: 935 FHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKES 994 FH G +S + +K ++N++ + +L E K + Sbjct: 989 FHFSGISSMNVTLGVPR-----------LKEIINAAKLISTPIITAKL----ECDNNKVA 1033 Query: 995 YKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELT 1054 ++ V T+ + V S ++ +D Sbjct: 1034 ARIVK----------AVIEKTTLGEVSKYMKEVYAPGSCYISVELDMDA----------- 1072 Query: 1055 GLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQ 1114 I + ++I+ G+ Sbjct: 1073 -----------------------------------IEQLKLNVDVHSVRRSILYGTKGIA 1097 Query: 1115 ISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRR 1174 ++G + + + I G+P VA Sbjct: 1098 KNAGMQMLK----AALPNVIVQGIPTVAR------------------------------A 1123 Query: 1175 LVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIV 1234 ++ P ++ + L G G + ++ + GV A I Sbjct: 1124 VINESNQSGTPTYNLLMEGYGLQDVMGSPGIDGLHTTT--NHVLEVEDVLGVEAARTQIS 1181 Query: 1235 NEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEA 1294 E+ ++ G+ I+ +H+ ++ M K + Sbjct: 1182 AEIDNIMSAYGIGIDQRHLLLLSDVMTFKGEV---------------------------- 1213 Query: 1295 NGKVGATYSRDLLGITKASLAT--ESFISAASFQETTRVLTEAAVAGKRDELRGLKENVI 1352 LGIT+ ++ ES + ASF++TT L +AAV G+ D + G+ E +I Sbjct: 1214 ------------LGITRFGVSKMRESVLMLASFEKTTDHLFDAAVHGRTDTIVGVSECII 1261 Query: 1353 VGRLIPAGTGY 1363 +G +P GTG Sbjct: 1262 MGMEVPVGTGL 1272 >UniRef50_C8W807 DNA-directed RNA polymerase n=6 Tax=Actinobacteria (class) RepID=C8W807_ATOPD Length = 1475 Score = 794 bits (2051), Expect = 0.0, Method: Composition-based stats. Identities = 433/964 (44%), Positives = 575/964 (59%), Gaps = 57/964 (5%) Query: 144 YVVIEGGMTNLERQQILTEEQYLDALEEF-GDEFDAKMGAEAIQALLKSMDLEQECEQLR 202 LE ++++++E L+ + G F MGAEA++ LL ++DLE+E ++LR Sbjct: 216 RREAFEKFMQLETRELISDEGLFSELKRYYGIYFKGGMGAEAVRDLLSNIDLEKEAKELR 275 Query: 203 EEL-NETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFA 261 + NE + KR+K KR+++++AF++ GN P MIL V+PV+PPDLRP+V LDGGRFA Sbjct: 276 AIIANEDAQKQKREKAIKRLEIVDAFLKGGNDPANMILDVVPVIPPDLRPMVQLDGGRFA 335 Query: 262 TSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNK 321 SDLNDLYRRVINRNNRLKRLLDL AP IIV NEKRMLQE+VDAL DNGRRGR +TG Sbjct: 336 ASDLNDLYRRVINRNNRLKRLLDLEAPSIIVNNEKRMLQESVDALFDNGRRGRPVTGRGG 395 Query: 322 RPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFI 381 RPLKSLA+ +KGKQGRFRQNLLGKRVDYSGRSVI V P+L+LHQCGLP MALELFKPF+ Sbjct: 396 RPLKSLAEALKGKQGRFRQNLLGKRVDYSGRSVIVVDPHLKLHQCGLPSAMALELFKPFV 455 Query: 382 YGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVL 441 +L IK AK+ ++R VVWDILDEVI++ VLLNRAPTLHRL IQAFEPVL Sbjct: 456 MRRLVELRKVENIKGAKRAIDRGTPVVWDILDEVIQDRLVLLNRAPTLHRLSIQAFEPVL 515 Query: 442 IEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIV 501 IEGKAI LHPLVCA +NADFDGDQM+VHVPL+ +AQ EAR LM+S+NN+ SPA+G+ + V Sbjct: 516 IEGKAIHLHPLVCAPFNADFDGDQMSVHVPLSTQAQTEARILMLSSNNLRSPASGKVLTV 575 Query: 502 PSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGL-ASLHARVKVR--------- 551 PSQD+V G+YY+T + A + + ++A + L A+V VR Sbjct: 576 PSQDMVFGVYYLTSEKTGADAKTLTFASFEDALLAIEANRDLDLQAKVVVRVSTKDANVA 635 Query: 552 ---------ITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAIS 602 +T + + + T +TTVGR I +N + K I Sbjct: 636 DSGRAIFRVMTGRGQYEDLNVTEGTKRFETTVGRIIFNRQCLPEDYP-YINYKMVKSDIG 694 Query: 603 KMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVA 662 ++N C + D I TGF YA +G +V + D VIPE K +++ EA+ V Sbjct: 695 ILVNDCCDRYPMADVEPILDNIKKTGFHYATLAGLTVSVWDAVIPEHKPQLLQEAQDRVD 754 Query: 663 EIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSI 722 +I E ++ G ++ ER+ +V++ W D + M+ + N I Sbjct: 755 QINEYYEDGFLSERERHVEVVNAWTECTDLLGSEMLAGFAED---------------NPI 799 Query: 723 YMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKG 782 YMMADSGARGS Q+RQLAGMRGLMA G I+ PI ANFREGL L+YFIST+GARKG Sbjct: 800 YMMADSGARGSKTQLRQLAGMRGLMADMSGETIDLPIKANFREGLEPLEYFISTYGARKG 859 Query: 783 LADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGR 842 L DTA T++SGYLTRRLVDVAQD++V E+DCGT E + + G + ++GR Sbjct: 860 LVDTASHTSDSGYLTRRLVDVAQDVIVREEDCGTDEAVTYPLIKPGQTSVD---TDLIGR 916 Query: 843 VTAEDVLKPGTADILVPRNTLL-HEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGR 901 T EDV P T ++L+P + +Q + L E+ + V++R++++C + +GVC CYG Sbjct: 917 CTLEDVCDPNTGEVLIPAGGYVESKQDLERLVEHGLTKVQLRALLTCKSKYGVCQKCYGW 976 Query: 902 DLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAAS-RAAAESSI-------QVK 953 DL+ +N G A+G+IAAQSIGEPGTQLTMRT H GG A + V Sbjct: 977 DLSTRRPVNIGTAVGIIAAQSIGEPGTQLTMRTIHSGGVAGADDITQGLPTVARMFDVVG 1036 Query: 954 NKGSIKLSNVKSVVNSSGKLVITSRNTE--LKLIDEFGRTK--ESYKVPYGAVLA--KGD 1007 N L + SG L IT TE L+++D ++ E ++VP D Sbjct: 1037 NVNEKILGREADLAPVSGVLHITPETTEYLLRIVDADDASRVIEEWRVPASVRFMPGIED 1096 Query: 1008 GEQVAGGETVAN--WDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSA 1065 G V G+ + + + +T++ + T Q EL V+ Sbjct: 1097 GVVVRAGDQITRGFVNFRMLRRLTDIESTMHTFVESVKDVYTSQGVELNDKHIEVIARQM 1156 Query: 1066 ERTA 1069 R Sbjct: 1157 LRRV 1160 Score = 239 bits (608), Expect = 8e-61, Method: Composition-based stats. Identities = 154/692 (22%), Positives = 241/692 (34%), Gaps = 59/692 (8%) Query: 748 AKPDGSIIETPITANFREGLNVLQYF--ISTHGARKGLADTALKTANSGYLTRRLVDVAQ 805 A +I E LNV + T R + + + Y+ ++V Sbjct: 635 ADSGRAIFRVMTGRGQYEDLNVTEGTKRFETTVGR-IIFNRQCLPEDYPYINYKMVKSDI 693 Query: 806 DLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGR-VTAEDVLKPGTADILVPRNTL- 863 ++V D C + + P+++ + G V+ D + P L+ Sbjct: 694 GILV-NDCCDRYPMADVEPILDNIKKTGFHYATLAGLTVSVWDAVIPEHKPQLLQEAQDR 752 Query: 864 ---LHEQWCDLLEENSVDAVKVRSVVS-CDTDFGVCAHCYGRDLARGHIINKGEAIGVIA 919 ++E + D V+V + + C G + +++ A G Sbjct: 753 VDQINEYYEDGFLSERERHVEVVNAWTECTDLLGSEMLAGFAEDNPIYMMADSGARGSK- 811 Query: 920 AQSIGEPGTQLTMRTFHIGGAASR-AAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSR 978 TQL G A N + + + Sbjct: 812 --------TQLRQLAGMRGLMADMSGETIDLPIKANFREGLEPLEYFISTYGARKGLV-- 861 Query: 979 NTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFT 1038 + G ++ V + + T P+I V T Sbjct: 862 -DTASHTSDSGYLTRR-------LVDVAQDVIVREEDC-GTDEAVTYPLIKPGQTSVD-T 911 Query: 1039 DMIDGQTITRQTDELTGL----------SSLVVLDSAERTAGGKDLRPALKIVDAQGNDV 1088 D+I T+ D TG S + E LR L G Sbjct: 912 DLIGRCTLEDVCDPNTGEVLIPAGGYVESKQDLERLVEHGLTKVQLRALLTCKSKYGVCQ 971 Query: 1089 LIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDTLARIPQESGGT---KDITGGLPRVADL 1144 G D+ + + V + I G L SGG DIT GLP VA + Sbjct: 972 KCYGWDLSTRRPVNIGTAVGIIAAQSIGEPGTQLTMRTIHSGGVAGADDITQGLPTVARM 1031 Query: 1145 FEA------RRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEM-IPKWRQL- 1196 F+ + A LA +SG++ ET ++ D S EE +P + Sbjct: 1032 FDVVGNVNEKILGREADLAPVSGVLHITPETTEYLLRIVDADDASRVIEEWRVPASVRFM 1091 Query: 1197 -NVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEV 1255 + +G V GD I+ G + RL + + V V+DVY QGV++NDKHIEV Sbjct: 1092 PGIEDGVVVRAGDQITRGFVNFRMLRRLTDIESTMHTFVESVKDVYTSQGVELNDKHIEV 1151 Query: 1256 IVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLA 1315 I RQMLR+ + N G S +L G+ V+ + + G +LG K + + Sbjct: 1152 IARQMLRRVQVTNPGDSSYLLGQYVDRYVFAETVQNIALAGGTPPEAEPAILGTLKVASS 1211 Query: 1316 TESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAA 1375 +S++S+ASF T VLT AA+ G D L LK NVIVG+ IPAGTG + + D Sbjct: 1212 IDSWLSSASFIRTAGVLTSAAIEGDVDHLLDLKSNVIVGKQIPAGTGLSAYNDVELTYHG 1271 Query: 1376 GEAPAAPQVTAEDASASLAELLNAGLGGSDNE 1407 + A+ SL + A L + + Sbjct: 1272 TKIDGPTSSLAK----SLPDWAPAELKDIEEQ 1299 Score = 175 bits (444), Expect = 8e-42, Method: Composition-based stats. Identities = 89/133 (66%), Positives = 110/133 (82%), Gaps = 1/133 (0%) Query: 16 EFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKY 75 EFDAIKI+LAS D IR WS+GEVKKPETINYRT KPE+DGLFC +IFGPV+D+EC CGKY Sbjct: 8 EFDAIKISLASADDIRGWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPVRDWECACGKY 67 Query: 76 KRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSR-IGLLLDMPLRD 134 K ++ +G+ CE+CGVEVT KVRR+RMGHIELA+P +HIW+ KS S + LLD+ +D Sbjct: 68 KGIRFKGITCERCGVEVTTAKVRRDRMGHIELAAPVSHIWYFKSPTSFPLARLLDIKSKD 127 Query: 135 IERVLYFESYVVI 147 +E+VLYF SYV+ Sbjct: 128 LEKVLYFASYVIT 140 >UniRef50_Q9LVH0 DNA-directed RNA polymerase n=7 Tax=Eukaryota RepID=Q9LVH0_ARATH Length = 1383 Score = 793 bits (2048), Expect = 0.0, Method: Composition-based stats. Identities = 277/1523 (18%), Positives = 497/1523 (32%), Gaps = 290/1523 (19%) Query: 4 LLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFG 63 K + +I ++ S + + +V ++ +FKP +GL R+ Sbjct: 10 TKKPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVWNIGLYDH-SFKPYENGLLDPRMGP 68 Query: 64 PVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSR 123 P ++ IC C G+++L P ++ + + Sbjct: 69 P---------------NKKSICTTCEGNFQNCP---GHYGYLKLDLPVYNVGYFNFILDI 110 Query: 124 IGLLLDMPLRDI--ERVLYFESYVVIEGGMTNLER---------------QQILTEEQYL 166 + + + E++ + M L++ Q + + Sbjct: 111 LKCICKRCSNMLLDEKLYEDHLRKMRNPRMEPLKKTELAKAVVKKCSTMASQRIITCKKC 170 Query: 167 DALEEFGDEF-----------DAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRK 215 L + +K+ I ++ ++ L Sbjct: 171 GYLNGMVKKIAAQFGIGISHDRSKIHGGEIDECKSAISHTKQSTAAINPLTYVLDPNLVL 230 Query: 216 KLTKRIKLLEA-FVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVIN 274 L KR+ + + +PE +I+T + V P +RP V + G + +DL +++I Sbjct: 231 GLFKRMSDKDCELLYIAYRPENLIITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIIL 290 Query: 275 RNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGK 334 N L ++L +Q V +++ RG + PL + +KGK Sbjct: 291 GNASLHKILSQPTSSPKNMQVWDTVQIEVARYINSEVRG-CQNQPEEHPLSGILQRLKGK 349 Query: 335 QGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI 394 GRFR NL GKRV+++GR+VI+ P L++ + G+P MA L P + + L + Sbjct: 350 GGRFRANLSGKRVEFTGRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCV 409 Query: 395 KAAKKMVEREEAVVWD------------------------ILDEVIREHPVLLNRAPTLH 430 + V + + + VL NR P+LH Sbjct: 410 RNGPNKYPGARNVRYPDGSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQPSLH 469 Query: 431 RLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNI 490 R+ I ++ + ++ + VC YNADFDGD+M +HVP T EA+ EA LM NN+ Sbjct: 470 RMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNL 529 Query: 491 LSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKV 550 +P NGE ++ +QD + + +TR L S +K Sbjct: 530 CTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLICSY-MGDGMDSIDLPTPTILKP 588 Query: 551 RITEYEKDANGELVAKT-----------SLKDTTVGRAIL------WMIVPKGLPYSIVN 593 K L+ K+ G +++ Sbjct: 589 IELWTGKQIFSVLLRPNASIRVYVTLNVKEKNFKKGEHGFDETMCINDGWVYFRNSELIS 648 Query: 594 QALGKKAIS-----KMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMV--- 645 LGK + + + R + +++ + G S+GIDD+ Sbjct: 649 GQLGKATLGNGNKDGLYSILLRDYNSHAAAVCMNRLAKLSARWIGIHGFSIGIDDVQPGE 708 Query: 646 -IPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTE 704 + +++ + I + E+F G + + + L T Sbjct: 709 ELSKERKDSIQFGYDQCHRKIEEFNRGNLQLKAGL--------DGAKSLEAEITGILNTI 760 Query: 705 TVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAK-----PDGSI----- 754 NS +M+ G++GS I Q+ G PDG I Sbjct: 761 REATGKACMSGLHWRNSPLIMSQCGSKGSPINISQMVACVGQQTVNGHRAPDGFIDRSLP 820 Query: 755 ----------IETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVA 804 + + +F GL ++F T G R+GL DTA+KTA++GY++RRL+ Sbjct: 821 HFPRMSKSPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKAL 880 Query: 805 QDLVVTEDDCGTHEGIMMTPVIEGGDVKEP-LRDRVLGRVTAEDVLK---PGTADILVPR 860 +DL+V D+ + + G D +P L + G + L T Sbjct: 881 EDLLVHYDNTVRNASGCILQFTYGDDGMDPALMEGKDGAPLNFNRLFLKVQATCPPRSHH 940 Query: 861 NTLLHEQWCDLLEENSVDAVK--------VRSVVSCDTDFGVCA---------------- 896 L E+ EE V K V+S+ + GV + Sbjct: 941 TYLSSEELSQKFEEELVRHDKSRVCTDAFVKSLREFVSLLGVKSASPPQVLYKASGQKYE 1000 Query: 897 ------------HCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRA 944 R I G AIG I AQSIGEPGTQ+T++TFH G AS Sbjct: 1001 ILPLIYINMQVFVKICVFRYREKKIEAGTAIGTIGAQSIGEPGTQMTLKTFHFAGVASMN 1060 Query: 945 AAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLA 1004 + + + ++N+S + + EL E S + G + Sbjct: 1061 ITQGVPR-----------INEIINASKNISTPVISAEL----ENPLELTSARWVKGRIEK 1105 Query: 1005 KGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDS 1064 G+ E + ++ +I +D + I +T S Sbjct: 1106 TTLGQVAESIEVLMTSTSASVRII------------LDNKIIEEACLSITPWSV------ 1147 Query: 1065 AERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARI 1124 + +I + ++ +A L + + Sbjct: 1148 ------KNSILKTPRIKLNDNDIRVLDTGLDITPVVDKSRAHFNLHNLKNVLPN------ 1195 Query: 1125 PQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSD 1184 I G+ V V ++ +++ DG Sbjct: 1196 --------IIVNGIKTVER-------------------VVVAEDMDKSKQI-----DGKT 1223 Query: 1185 PYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQ 1244 ++ + L V + + ++ + G+ A I++E+ V Sbjct: 1224 KWKLFVEGTNLLAVMGTPGING---RTTTSNNVVEVSKTLGIEAARTTIIDEIGTVMGNH 1280 Query: 1245 GVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSR 1304 G+ I+ +H+ ++ M Y Sbjct: 1281 GMSIDIRHMMLLADVMT----------------------------------------YRG 1300 Query: 1305 DLLGITKASLAT--ESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362 ++LGI + + +S + ASF+ T L AA +GK D + G+ E VI+G + GTG Sbjct: 1301 EVLGIQRTGIQKMDKSVLMQASFERTGDHLFSAAASGKVDNIEGVTECVIMGIPMKLGTG 1360 Query: 1363 YAYHQDRMRRRAAGEAPAAPQVT 1385 R + P ++ Sbjct: 1361 ILKVLQRTDDLPKLKYGPDPIIS 1383 >UniRef50_P24928 DNA-directed RNA polymerase II subunit RPB1 n=93 Tax=Eukaryota RepID=RPB1_HUMAN Length = 1970 Score = 790 bits (2041), Expect = 0.0, Method: Composition-based stats. Identities = 272/1538 (17%), Positives = 486/1538 (31%), Gaps = 205/1538 (13%) Query: 10 AQTKTEEFDAIKIALASPDMIRSWSFGE--VKKPETINYRTFKPERDGLFCARIFGPVKD 67 + ++ + SPD ++ S E +K PET +P+ GL R Sbjct: 11 SACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPET--TEGGRPKLGGLMDPR------- 61 Query: 68 YECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLL 127 + + R C+ C +T+ GHIELA P H+ FL + + Sbjct: 62 --------QGVIERTGRCQTCAGNMTECP---GHFGHIELAKPVFHVGFLVKTMKVLRCV 110 Query: 128 LDMPLRDIE-----RVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEF------ 176 + + ++ + + + + + EE ++F Sbjct: 111 CFFCSKLLVDSNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPE 170 Query: 177 --------DAKMGAEAIQALLKSMDLEQECE---------QLREELNETNSETKRKKLTK 219 G Q ++ LE E + + L+ K+++ Sbjct: 171 GDEDLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISD 230 Query: 220 RIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRL 279 + +PEWMI+TVLPV P +RP V + G DL ++ NN+L Sbjct: 231 EECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQL 290 Query: 280 KRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAIT-GSNKRPLKSLADMIKGKQGRF 338 +R A ++ + ++LQ V ++DN G + RPLKSL +KGK+GR Sbjct: 291 RRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRV 350 Query: 339 RQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIK--- 395 R NL+GKRVD+S R+VIT P L + Q G+P+ +A + I + L ++ Sbjct: 351 RGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGN 410 Query: 396 ---AAKKMVEREEAVVWD-----------------ILDEVIREHPVLLNRAPTLHRLGIQ 435 K + R+ D + + V+ NR PTLH++ + Sbjct: 411 SQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMM 470 Query: 436 AFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPAN 495 ++ +L+ V YNADFDGD+M +H+P +LE + E + L M I++P + Sbjct: 471 GHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQS 530 Query: 496 GEPIIVPSQDVVLGLYYMTRDCVNA-KGEGMVLTGPKEAERLYRSGLASLHARVKVRITE 554 P++ QD + + T+ V +GE M L G A +K R Sbjct: 531 NRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMF----LSTWDGKVPQPAILKPRPLW 586 Query: 555 YEKDANGELVAKTSLKDTTVGRAI----------------LWMIVPKGLPYSIVNQALGK 598 K ++ T ++ L I+ + Sbjct: 587 TGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLG 646 Query: 599 KAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEK----KHEII 654 + +++ Y +G T +F I + G ++GI D + K I Sbjct: 647 TSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTI 706 Query: 655 SEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEE 714 +A+ +V E+ E+ + + + L ++ Sbjct: 707 KKAKQDVIEVIEKAHNNELEPTPG--------NTLRQTFENQVNRILNDARDKTGSSAQK 758 Query: 715 KQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM--------------------AKPDGSI 754 +N+ M SGA+GS I Q+ + G G Sbjct: 759 SLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPE 818 Query: 755 IETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDC 814 + ++ GL ++F G R+GL DTA+KTA +GY+ RRL+ + ++V D Sbjct: 819 SRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDAT 878 Query: 815 GTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEE 874 + + + G D LKP + Sbjct: 879 VRNSINQVVQLRYGEDGLAGESVE----FQNLATLKPSNKAFEKKFRFDYTNERALRRTL 934 Query: 875 NSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRT 934 V S + D +I V+ ++ ++ Sbjct: 935 QEDLVKDVLSNAHIQNELEREFERMREDREVLRVIFPTGDSKVVLPCNL----LRMIWNA 990 Query: 935 FHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKL-------VITSRNTELKLIDE 987 I R ++ +G +LS +VN L N L+ Sbjct: 991 QKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLC 1050 Query: 988 FGRTKESYKVPYGA------VLAKGDGEQVA---------GGETVANWDPHTMPVITEVS 1032 R E +++ A + + +A +++ + Sbjct: 1051 SRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYA 1110 Query: 1033 GFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPG 1092 G + + + + + + L + D+L Sbjct: 1111 GVSAKNVTLGVPRLKELIN---------ISKKPKTPSLTVFLLGQSARDAERAKDILCRL 1161 Query: 1093 TDMPAQYFLPGKAIVQL-EDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPK 1151 + AI + + D D+ P + + R+ Sbjct: 1162 EHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHM 1221 Query: 1152 EPAILAEISGIVSFGKETKGKRRLVITPVDGSDPY-EEMIPKWRQLNVFEGERVERGD-- 1208 L + + I + + E E V Sbjct: 1222 TDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDD 1281 Query: 1209 --VISDGPEAPHDILRLRGVHAV-------------TRYIVNE------VQD-VYRLQGV 1246 + + L+G+ + + I+ E +Q+ + GV Sbjct: 1282 DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGV 1341 Query: 1247 KINDKHIEVIVRQMLRKATIVNAGSSDF--------LEGEQVEYSRVK--IANRELEANG 1296 + E V + + + + LE E N A Sbjct: 1342 SLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALL 1401 Query: 1297 KVGATYSRDLLGITKASLAT--ESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVG 1354 T L+ IT+ + + SF+ET VL EAA G+ D ++G+ EN+++G Sbjct: 1402 CDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLG 1461 Query: 1355 RLIPAGTGYA-YHQDRMRRRAAGEAPAAPQVTAEDASA 1391 +L PAGTG D + + E P Sbjct: 1462 QLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPT 1499 >UniRef50_P04052 DNA-directed RNA polymerase II subunit RPB1 n=1391 Tax=cellular organisms RepID=RPB1_DROME Length = 1887 Score = 790 bits (2039), Expect = 0.0, Method: Composition-based stats. Identities = 269/1548 (17%), Positives = 511/1548 (33%), Gaps = 253/1548 (16%) Query: 10 AQTKTEEFDAIKIALASPDMIRSWSFGE--VKKPETINYRTFKPERDGLFCARIFGPVKD 67 ++ + ++ + SPD IR S E V+ ET+ +P+ GL R Sbjct: 7 SKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETM--EGGRPKLGGLMDPR------- 57 Query: 68 YECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLL 127 + + R C+ C +T+ GHI+LA P HI F+ + + Sbjct: 58 --------QGVIDRTSRCQTCAGNMTECP---GHFGHIDLAKPVFHIGFITKTIKILRCV 106 Query: 128 LDMPLRDIERVLYFE-SYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFD--------- 177 + + + +V++ +R + + + E G++ D Sbjct: 107 CFYCSKMLVSPHNPKIKEIVMKSRGQPRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPD 166 Query: 178 -----AKMGAEAIQALLKS--MDLEQECEQLREELNETN-------SETKRKKLTKRIKL 223 G Q ++ +DL E + E+ E K +T Sbjct: 167 PNKKPGHGGCGHYQPSIRRTGLDLTAEWKHQNEDSQEKKIVVSAERVWEILKHITDEECF 226 Query: 224 LEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLL 283 + +P+WMI+TVLPV P +RP V + G DL +I NN L++ Sbjct: 227 ILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNE 286 Query: 284 DLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAIT-GSNKRPLKSLADMIKGKQGRFRQNL 342 A +++ +MLQ V L+DN G + +PLK++ +KGK+GR R NL Sbjct: 287 ASGAAAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNL 346 Query: 343 LGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIK------A 396 +GKRVD+S R+VIT P LR+ Q G+P+ +A L P + + + ++ Sbjct: 347 MGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYP 406 Query: 397 AKKMVEREEAVVWD-----------------ILDEVIREHPVLLNRAPTLHRLGIQAFEP 439 K + R+ D + + + V+ NR PTLH++ + Sbjct: 407 GAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRV 466 Query: 440 VLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPI 499 ++ +++ + YNADFDGD+M +HVP ++E + E + ++ I++P +P+ Sbjct: 467 KVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPV 526 Query: 500 IVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDA 559 + QD + + MT+ V E ++ +K R K Sbjct: 527 MGIVQDTLTAVRKMTKRDVFITREQVMNLLM---FLPTWDAKMPQPCILKPRPLWTGKQI 583 Query: 560 NGELVAKTSLKDTTVGRAI----------------LWMIVPKGLPYSIVNQALGKKAISK 603 ++ T M+ L I+ + + Sbjct: 584 FSLIIPGNVNMIRTHSTHPDEEDEGPYKWISPGDTKVMVEHGELIMGILCKKSLGTSAGS 643 Query: 604 MLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPE----KKHEIISEAEA 659 +L+ C+ LG F I + G S+GI D + + + I +A+ Sbjct: 644 LLHICFLELGHDIAGRFYGNIQTVINNWLLFEGHSIGIGDTIADPQTYNEIQQAIKKAKD 703 Query: 660 EVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSF 719 +V + ++ + + + L ++ + Sbjct: 704 DVINVIQKAHNMELEPTPG--------NTLRQTFENKVNRILNDARDKTGGSAKKSLTEY 755 Query: 720 NSIYMMADSGARGSAAQIRQLAGMRGLM--------------------AKPDGSIIETPI 759 N++ M SG++GS I Q+ G G + Sbjct: 756 NNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFV 815 Query: 760 TANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEG 819 ++ GL +++ G R+GL DTA+KTA +GY+ RRL+ + ++V D + Sbjct: 816 ENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV 875 Query: 820 IMMTPVIEGGD--VKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSV 877 + + G D E + + + V + L+ + + D + + Sbjct: 876 GQLIQLRYGEDGLCGELVEFQNMPTVKLSNKSFEKRFKFDWSNERLMKKVFTDDVIKEMT 935 Query: 878 DAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTM---RT 934 D+ + + + D V R + + ++ + Sbjct: 936 DSSEAIQELEAEWDRLVSDRDSLRQIFPNGESKVVLPCNLQ----------RMIWNVQKI 985 Query: 935 FHIGGAASRA-----AAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFG 989 FHI + + + I N + + + + ++ Sbjct: 986 FHINKRLPTDLSPIRVIKGVKTLLERCVIVTGNDR-ISKQANENATLLFQCLIRSTLCTK 1044 Query: 990 RTKESYKVPYGAVLAK-------------GDGEQV--AGGETVANWDPHTMPVITEVSGF 1034 E +++ A GE V +++ +G Sbjct: 1045 YVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGV 1104 Query: 1035 VRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTD 1094 + + + + + + L + +VL Sbjct: 1105 SSKNVTLGVPRLKEIIN---------ISKKPKAPSLTVFLTGGAARDAEKAKNVLCRLEH 1155 Query: 1095 MPAQYFLPGKAIVQLEDGVQ--ISSGDTLARIPQE--SGGTKDITGGLPRVADLFEARRP 1150 + AI D + IS + E I+ L R+ +L R Sbjct: 1156 TTLRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFDPTRISPWLLRI-ELDRKRMT 1214 Query: 1151 KEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVI 1210 + + +I+ ++ G I D +D I + E D + Sbjct: 1215 DKKLTMEQIAEKINVGFGEDLNC---IFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKM 1271 Query: 1211 SDG------PEAPHDILRLRGVHAV------------TRYIV------------------ 1234 D + L+G+ A+ + IV Sbjct: 1272 EDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWLLETD 1331 Query: 1235 --------------------NEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDF 1274 N++ +++++ G++ K +E + +L+ Sbjct: 1332 GTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQ------------ 1379 Query: 1275 LEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLAT--ESFISAASFQETTRVL 1332 G V Y + + + A G L+ IT+ + + SF+ET VL Sbjct: 1380 FYGLYVNYRHLALLCDVMTAKGH--------LMAITRHGINRQDTGALMRCSFEETVDVL 1431 Query: 1333 TEAAVAGKRDELRGLKENVIVGRLIPAGTGYA-YHQDRMRRRAAGEAP 1379 +AA + D +RG+ EN+I+G+L GTG D + R E P Sbjct: 1432 MDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIP 1479 >UniRef50_C5CGD8 DNA-directed RNA polymerase n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CGD8_KOSOT Length = 1560 Score = 787 bits (2033), Expect = 0.0, Method: Composition-based stats. Identities = 435/1201 (36%), Positives = 616/1201 (51%), Gaps = 143/1201 (11%) Query: 150 GMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNE-T 208 T L+ I+ E +Y E + + + GA AIQ LL+S+DLE+ Q+ EL Sbjct: 298 KETGLKVGDIIIENEYDAYKEIYPGKIECDYGALAIQKLLRSLDLEELKIQIEHELKGIP 357 Query: 209 NSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDL 268 S + KL +R+K ++ F++SGNKPEW++L LPV+PP+LRP++ ++GGRFAT+DLNDL Sbjct: 358 KSSARALKLLRRLKFVKDFLKSGNKPEWIVLEALPVIPPELRPMIQIEGGRFATTDLNDL 417 Query: 269 YRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLA 328 YRRVINRNNRL +LL + APDIIVRNEKRMLQEAVD+L+ NGR G+A+T + RPLKSL Sbjct: 418 YRRVINRNNRLAKLLSIGAPDIIVRNEKRMLQEAVDSLIYNGRVGKAVTDKSGRPLKSLT 477 Query: 329 DMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLEL- 387 D++KGK+GRFR+NLLGKRVDYSGR+VI VGP L++H+CG+PK+MA+ELFKPF+ GKL Sbjct: 478 DLVKGKKGRFRRNLLGKRVDYSGRAVIVVGPDLKIHECGIPKRMAMELFKPFVLGKLLHG 537 Query: 388 -RGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKA 446 T K K ++E+E W++L++VI+ HPVLLNRAPTLHR+ IQAF P L+EG A Sbjct: 538 SESSKTARKLKKTIIEKEMPEAWEVLEDVIKGHPVLLNRAPTLHRISIQAFIPRLVEGNA 597 Query: 447 IQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDV 506 IQLHPLVCA +NADFDGDQMAVHVPL+ AQ EA+ LM+S N++SPANG+PI +P +D+ Sbjct: 598 IQLHPLVCAPFNADFDGDQMAVHVPLSAAAQAEAKFLMLSRYNVISPANGKPISMPGKDI 657 Query: 507 VLGLYYMTRDCVNAK---------------------------------GEGMVLTGPKEA 533 ++G+YY+T K + EA Sbjct: 658 IVGVYYLTTVDHEYKVFEEKLNKYQEELKSQGIDGVELRRRVREKALEKINWKFSSEAEA 717 Query: 534 ERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVN 593 Y G+ LH + V++ E + D TTVGR I I+P+ L + Sbjct: 718 LLAYDIGIIKLHEPILVKLDENKGDLTL----------TTVGRIIFNAILPEDLK--DYS 765 Query: 594 QALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEI 653 GKKAI ++ C++ G+ T D +M GF YA SG ++ I D+VI +K +I Sbjct: 766 TTFGKKAIKNLIYRCFQEYGIDRTADLLDDMMRLGFHYATISGLTISIRDIVIYPEKDKI 825 Query: 654 ISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQE 713 I EA +V +I++ ++ G + +R ++I IW + + + D + Sbjct: 826 IEEARKKVDKIEDLYRKGFLNELDRSQEIIKIWEKTTEELMRKTFDEFKK---------- 875 Query: 714 EKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYF 773 FN ++MM DSGARG+ Q++QLAGMRGLMA P G IE PI +NFR+GL L++F Sbjct: 876 ---YPFNPVFMMVDSGARGNIDQLKQLAGMRGLMADPSGKTIEVPIISNFRDGLTELEFF 932 Query: 774 ISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKE 833 STHGARKG ADTAL+T+ +GYLTRRLVDVAQ + +T DCGT GI ++ E Sbjct: 933 TSTHGARKGSADTALRTSFAGYLTRRLVDVAQGVTITTPDCGTSNGIEAFEMMADDVTIE 992 Query: 834 PLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFG 893 L D + GRV AEDV+ P T ++L +N + +++ DA V S Sbjct: 993 KLEDFIFGRVLAEDVIDPETNEVL--KNPVSGKEYIRDTMIRDEDAKFVASFRKTIPVKK 1050 Query: 894 VCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVK 953 G+ E + + + + GTQLT H ++ Sbjct: 1051 TEKVNLNEVGHFGYYAELAEDVEIGDKE--FKAGTQLTSDILH------------ELKTL 1096 Query: 954 NKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAG 1013 G + L +V +N + + + + V Sbjct: 1097 EVGEVMLDIYPAVGKVYVGPKFRDKNGTVLVKYQEKIDV------------VTAKKLVDN 1144 Query: 1014 GETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKD 1073 G T P + +T D + S Sbjct: 1145 GFTSVEVRPV----------------IKIRSVLTCDADHGVCAMCYGMDLSNHEIVN--- 1185 Query: 1074 LRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDTLARIPQESGGT- 1131 V + I G L +GG Sbjct: 1186 -----------------------------VGEAVGIVAAQSIGEPGTQLTMRTFHTGGIA 1216 Query: 1132 --KDITGGLPRVADLFEARRPKE--PAILAEISGIVSFGKETKGKRRLVITPVDGSDPYE 1187 DIT GLPR +LFEAR+ + A+ AE GIV + R+ + E Sbjct: 1217 TGADITRGLPRAEELFEARKKLKDPEALFAEEEGIVKDIATDEKGRKKIYIETLEGKIKE 1276 Query: 1188 EMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVK 1247 + + V G++V +G+ ++ G P ++ GV Y++ E + VY QGV+ Sbjct: 1277 HDLSTVIKPRVEVGDKVLKGESLTTGTIRPRKLMEKLGVIPTAMYLLMETKRVYAEQGVE 1336 Query: 1248 INDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLL 1307 I+DKH E+I+RQML +V+ GS+D+L G+ + VK NRE+ + K ++ Sbjct: 1337 IHDKHFELIIRQMLSMVEVVDPGSTDYLPGDLLSLQDVKKINREILEDNKKVEENREYVI 1396 Query: 1308 G 1308 G Sbjct: 1397 G 1397 Score = 166 bits (420), Expect = 6e-39, Method: Composition-based stats. Identities = 82/135 (60%), Positives = 103/135 (76%) Query: 15 EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74 + ++I +ASP+ IRSWS GEVKKPETINYRTFKPERDGLFC +IFGP KDYEC CGK Sbjct: 8 RKISTVQIKIASPERIRSWSSGEVKKPETINYRTFKPERDGLFCEKIFGPTKDYECACGK 67 Query: 75 YKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRD 134 YK K+ G ICE+CGV V + RR R+GHIELA+P H+W+LKS PS + LL++P +D Sbjct: 68 YKGKKYEGTICERCGVRVESKEARRRRIGHIELAAPVVHVWYLKSAPSILASLLNIPSKD 127 Query: 135 IERVLYFESYVVIEG 149 +E ++Y+ S VIE Sbjct: 128 LENIIYYGSKRVIEK 142 Score = 42.9 bits (99), Expect = 0.090, Method: Composition-based stats. Identities = 24/154 (15%), Positives = 52/154 (33%), Gaps = 9/154 (5%) Query: 953 KNKGSIKLSNVKSVVNSSGKLVI------TSRNTELKLIDEFGRTKESYKVPYGAVLAKG 1006 + I+ + GK+ I T R +I+ + Y + G ++ Sbjct: 177 EQGYKIRSPRGPVIAEIDGKVKIENGTGNTERELNWIIIEGENGITKKYPIFEGGLIYVQ 236 Query: 1007 DGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAE 1066 DG++V G+T+A+ V++ + + +TD + ++V E Sbjct: 237 DGDEVRQGDTLADRFLFEDEVLS--EKEFKIFEEYYPGKFESETDTESDRPIVIVTKIDE 294 Query: 1067 RTAGGKDLRPA-LKIVDAQGNDVLIPGTDMPAQY 1099 + L+ + I + I + Y Sbjct: 295 DVSKETGLKVGDIIIENEYDAYKEIYPGKIECDY 328 >UniRef50_D2VNK8 RNA polymerase II n=2 Tax=Naegleria gruberi RepID=D2VNK8_NAEGR Length = 1757 Score = 785 bits (2027), Expect = 0.0, Method: Composition-based stats. Identities = 276/1543 (17%), Positives = 497/1543 (32%), Gaps = 206/1543 (13%) Query: 33 WSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEV 92 S EV ET KP+ GL R+ C CG Sbjct: 1 MSVCEVLHAET--QEKGKPKESGLMDLRMGTIDHHLS---------------CLTCGGNA 43 Query: 93 TQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLL--------DMPLRDIERVLYFESY 144 T+ GH+ + P ++ F+ ++ + + D ++ F + Sbjct: 44 TECP---GHFGHVRIH-PVFNVLFINTVVKVLQSVCIHCGKLLADKSSLQFKKASKFVNR 99 Query: 145 VVIEGGMTNLERQQIL-----TEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECE 199 M +L R+ +E + F + G +Q + L+ E Sbjct: 100 RKRFKEMIDLCRKDKCIIETGNKENEQNQEANIDPTFQPRNGCGGLQPKISRDGLKIFAE 159 Query: 200 QLRE------------ELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPP 247 ++ EL + K++ L F + +PEWMILT LP+ PP Sbjct: 160 YKKDTSAEAKQELTKQELTAERALQIFKRIPAEDLELLGFDKDNARPEWMILTCLPIPPP 219 Query: 248 DLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALL 307 +RP V + DL +I N +++ P + RMLQ + Sbjct: 220 QVRPSVHHGSADRSEDDLTHKLADIIKANAAIQKNEKSGTPLHQMEEMVRMLQYHCATYV 279 Query: 308 DNGRRGRA-ITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQC 366 +N G T + RPLKS+ +KGK+GR R NL+GKRVD+S R+VIT P + + Q Sbjct: 280 NNEYPGVPTATTKSGRPLKSIRQRLKGKEGRVRGNLMGKRVDFSARTVITADPNIDIDQV 339 Query: 367 GLPKKMALELFKPFIYGKLELRGLATTI------KAAKKMVEREEAVVWD---------- 410 G+P+ +A + P I L + K V RE+ D Sbjct: 340 GVPRTVASNMTVPEIVTPFNFERLNELVTNGPLTYPGAKYVIREDGTRIDLRFASGKAND 399 Query: 411 ---------ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADF 461 + + +L NR P+LH++ + ++ +++ V YNADF Sbjct: 400 QIQLEYGYKVERHLQDGDVILFNRQPSLHKMSMMGHRIKVMPYSTFRMNLSVTTPYNADF 459 Query: 462 DGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAK 521 DGD+M +HVP +L+ + E LMM NI++P + P+I QD +L +TR V Sbjct: 460 DGDEMNLHVPQSLQTKAELLELMMVPRNIITPQSNRPVIALVQDTLLAASKLTRRDVFIA 519 Query: 522 GEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAIL-- 579 + M+ + G + A +K + K L+ K +L++T+ L Sbjct: 520 KDLMM---NCLMHLIDFDGKLPVPAILKPKPLWTGKQLFTFLLPKVNLENTSSTHEDLTD 576 Query: 580 ---------------WMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQI 624 +I L ++++ + +++ G+ F Q Sbjct: 577 KKDHLDHDIPEFDTKVLIDRGELVSGVLDKKSLGSSHGSLIHIIVNEKGVNEGKKFLGQC 636 Query: 625 MYTGFAYAARSGASVGIDDMVIP----EKKHEIISEAEAEVAEIQEQFQSGLVTAGERYN 680 + G S+GI D + E+ E I +AE +V I + Q G + A Sbjct: 637 QRVINHWLINRGFSIGIGDTIADKATMEQIEETIRKAEKDVKLIVKDAQEGKLRAEAG-- 694 Query: 681 KVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQL 740 + L + ++ N+I M +G++GS I Q+ Sbjct: 695 ------RTIQQSFENQVNKVLNKAREDAGNKAKKSLKDDNNIKSMVTAGSKGSYINISQI 748 Query: 741 AGMRGLMA--------------------KPDGSIIETPITANFREGLNVLQYFISTHGAR 780 G G + ++ GL ++F T G R Sbjct: 749 IACVGQQNVEGKRIPYGFRNRTLPHFAQDDHGPESRGFVANSYLRGLTPQEFFFHTMGGR 808 Query: 781 KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLR--DR 838 +GL DTA+KT+ +GY+ RRL+ +D++V D + + G D + + + Sbjct: 809 EGLIDTAVKTSETGYIQRRLIKAMEDIMVKYDGTVRDAQGNVVQFLYGEDGMDAHKVESQ 868 Query: 839 VLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHC 898 + + D ++ + + S +S + Sbjct: 869 SIDIMNLSDAKFQDKYWYNSLGSSPSFTNPTESSVSMPSGGILKESFISTKVYDEILKDP 928 Query: 899 YGRDLARGHIINKGEAIGVIAAQSIG---EPGTQLTMRTFHIGGAASRAAAESSIQVKNK 955 I I E + + I A + K Sbjct: 929 ATYLSKVREEYKTLMEDRHILRTEIFPNAENKIVMPVNLKRIIKNAQKEYGIHPSIGKPS 988 Query: 956 GSIKLSNVKSVVNSSGKLVITSRNTELK---------LIDEFGRTKESYKVPYGAVLAKG 1006 + ++ + LV+ EL L F R+ S KV + Sbjct: 989 DMNPIYVIEKIKKLCDDLVVIKGTDELSTEAQTNATLLFSMFLRSTFSSKVVLKELCLTQ 1048 Query: 1007 D--------------------GEQV--AGGETVANWDPHTMPVITEVSGFVRFTDMIDGQ 1044 + GE V +++ +G + Sbjct: 1049 EAFDFLVGEIRMRFHNCLAQPGEMVGSVAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVP 1108 Query: 1045 TITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGK 1104 + + + + + G + + D + + Y Sbjct: 1109 RLKELLNVAKNIKTPGLTIYLNNEYIGDFEKAKMVKEDLEYTTLGHVTAATSIVYDPEPA 1168 Query: 1105 AIVQLEDGVQISSGDTLAR----IPQESGGTKDITGGLPRVAD---LFEARRPKEPAILA 1157 V ED I + + + + L ++ L A+ K+ Sbjct: 1169 NSVIEEDREFIEELLEELKDTAVLDSTTLNPWSLRFELDKMMMSDTLTMAQVAKKIQEEF 1228 Query: 1158 EISGIVSFGKETKGKRRLVITPVDGSDPYEEMI-----PKWRQLNVFEGERVE--RGDVI 1210 + + + K LV+ E+ P L E E +E + + Sbjct: 1229 QNDITCFYSDDNADKLILVVRIHKDDKEKEKDAQVAKDPSDEVLRKLEEEDIENSTVEFL 1288 Query: 1211 SDGPEAPHDILRLRGVHAVTRYIVNEV--QDVYRLQGVK------INDKHIEVIVRQMLR 1262 + L L+G + + + E + V+ GV ++ + ++ +L Sbjct: 1289 RRLESNMLNELALKGYKDLKKVFLREENDKKVFSSSGVATVKQWVLDTEGCNLLA--VLS 1346 Query: 1263 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATY-------------------S 1303 + + ++ E ++ ++ L + + Sbjct: 1347 HPYVDHTITTSNDVNEILDVLGIEACRNALMREMRKVIEFDGSYVNYRHLAILCDVMTHR 1406 Query: 1304 RDLLGITKASLAT--ESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGT 1361 L+ IT+ + + SF+ET +L EAA D L+G+ NV+VG+L P GT Sbjct: 1407 GGLMAITRHGINRSDTGPLMRCSFEETVEILIEAATFADTDTLKGVSANVMVGQLAPIGT 1466 Query: 1362 GYA-YHQDRMRRRAAGEAPAAPQVTAEDASASLAELLNAGLGG 1403 G + D + A + + SL G Sbjct: 1467 GCFGLYLDEELLKQAVAVKPSFVTETKSMYGSLGATTPYHTSG 1509 >UniRef50_Q6CB20 DNA-directed RNA polymerase n=1 Tax=Yarrowia lipolytica RepID=Q6CB20_YARLI Length = 1483 Score = 784 bits (2025), Expect = 0.0, Method: Composition-based stats. Identities = 256/1543 (16%), Positives = 492/1543 (31%), Gaps = 251/1543 (16%) Query: 5 LKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFK-PERDGLFCARIFG 63 LK + I+ SP I S EV + + + + P G R+ Sbjct: 9 LKDRFSSDPPRVIGGIEFGALSPQEILKLSEVEVATRDLYDLQKGRAPMEYGALDPRMG- 67 Query: 64 PVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSR 123 + C+ C + GH++LA P HI + K+ S Sbjct: 68 --------------VSSNMSKCKTCAEPLATCP---GHFGHVKLALPCFHIGYFKATISI 110 Query: 124 IGLLLDMPLRDIERVLYFESYV--VIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMG 181 + + R + ++ + G+ NL R QIL + + ++ G Sbjct: 111 LQNVCKDCARILLSDEDRRKFLTELRRPGIDNLRRMQILKKVNEQCKKQRRCVHCNSING 170 Query: 182 ----AEAIQALLKS--------------------------MDLEQECEQLREELNETNSE 211 A ++ + D+E+ ++ ++LN Sbjct: 171 VVKKAGPLKIIHDKFRHVGKKIPEEKTEFDNSFNTAKESIPDVERLQKKAMDDLNPLKVF 230 Query: 212 TKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRR 271 +++ L +PE I +P P +RP V D DL Sbjct: 231 NLFREILPMDCELLGMDPGKGRPETYIWRYMPAPPVCIRPSVMQDSAS-NEDDLTVKLTE 289 Query: 272 VINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMI 331 ++ + ++ L + + +LQ AV +++ ++ +P+++L + Sbjct: 290 IVWTSAIIEAGLKQGMAVASLMEQWELLQLAVAVYINSDTPQGPGQSAS-KPIRALTQRL 348 Query: 332 KGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLA 391 KGKQGRFR NL GKRVD+SGR+VI+ P LR+ Q +P ++A L P + L Sbjct: 349 KGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDQVAVPDRVAKILTYPERVTSHNIEKLR 408 Query: 392 TTI------KAAKKMVER------------------EEAVVWDI-LDEVIREHPVLLNRA 426 + + + E + D+ + VL NR Sbjct: 409 NLVITGPSQHPGANYLFKKGESLRRNLRFGDRAKIAERLEIGDVVERHLEDGDVVLFNRQ 468 Query: 427 PTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMS 486 P+LHRL I A + + +L+ VC YNADFDGD+M +HVP T EA+ EA LM Sbjct: 469 PSLHRLSILAHFAQIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARTEAMCLMGV 528 Query: 487 TNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHA 546 +N+++P +GEPII +QD + G + +++ S Sbjct: 529 KHNLVTPRSGEPIIAATQDFITGSFLISKKDYMIDRRTFCQL------LAMMSDGDMQFD 582 Query: 547 RVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPY----------------- 589 I + + G+ V ++ + I+ + Sbjct: 583 IPPPAIQKPVQLWTGKQVFSLLIRPNKSSKVIINLDAKNKTFQPPPQGYPRDMSPNDGFL 642 Query: 590 -----SIVNQALGKKAIS-----KMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASV 639 ++ A+ K + + + R G +++ + G S+ Sbjct: 643 VIRNSQVMCGAMDKATLGDGKKDSVFYSILRDYGPDEAAGAMNRMAKLCARWLGGRGFSI 702 Query: 640 GIDDMV----IPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSK 695 GI D+ + K ++ +A A+ E+ E G + + A +SK Sbjct: 703 GISDVTPGAELSSTKEILVEQAYAKCDELIEALAQGKLEPQPGCTPAQTLEAKIGGLLSK 762 Query: 696 AMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGS-- 753 + + ++ N+ +MA G++GS + Q+ + G Sbjct: 763 VREE--------VGEVCIKELEKSNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGKRVP 814 Query: 754 ------------------IIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGY 795 + + +F GL+ ++ R+GL DTA+KTA +GY Sbjct: 815 NGFQDRSLPHFRKFSVTPPSKGFVRNSFYSGLDPPEFLFHAISGREGLVDTAVKTAETGY 874 Query: 796 LTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTAD 855 ++RRL+ +DL D + GGD +P R P + Sbjct: 875 MSRRLMKSLEDLSARYDSTVRTSSNGVVQFRYGGDGLDPFDMEGDAR--------PVDFN 926 Query: 856 ILVPRNTLLHEQWCDLLEENSVDAVKV-RSVVSCDTDFGVCAHCYGRDLARGHIINKGEA 914 + + E +++ V + + V + ++ Sbjct: 927 RTWTHCEYISSKLGIEPEAETINVSSVPDTPLKPFEIMAVVEEQIFALEQKLQRMDNSGN 986 Query: 915 IGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNK------------GSIKLSN 962 + +A ++ + + + I K + G ++ + Sbjct: 987 MLSVATKAARDRASAEKYVDEVDPRRDFLQSIRGFIYTKAEELATVRESRGLMGLLEKPD 1046 Query: 963 VKSVVNSSG-----KLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAG--GE 1015 K VI + N ++ T + G V + Sbjct: 1047 GDEYDGQDFDLFAPKAVIRAVNQVCRISHRMVDTFLQACLRKYQKAQVEPGTAVGAIGAQ 1106 Query: 1016 TVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVL------------- 1062 ++ +G + I + +S+ ++ Sbjct: 1107 SIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKAISTPIITTVLNNETELQAAR 1166 Query: 1063 ---------------DSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIV 1107 + ++I + +L+ + + + Sbjct: 1167 IVKGRIEKTLLGDIAHYIQDEYSYAKASVRVRIDFNTIDHLLLEIDMDQIREAIIKAPKL 1226 Query: 1108 QLEDGVQISSGDTLARIPQES--GGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSF 1165 +L+ G + R+ ES T + ++FE + A+ + Sbjct: 1227 KLKPGQVSIEEEKYIRVDIESDAVKKNGSTTIIDTDGEIFEEGVESDTAMFLRTQHLKRV 1286 Query: 1166 GKET-----KGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDI 1220 R VI + + +E ++ + +V V ++ Sbjct: 1287 LPNVVVKGFTDISRAVINIREKDNTHELLVEGYGLRHVMTTSGVIGTQ---TSTNHVLEV 1343 Query: 1221 LRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQV 1280 + G+ A I++E+ G+ ++ +HI ++ M Sbjct: 1344 KEVLGIEAARASIIHEIDYTMSKHGMSVDPRHITLLGDVMT------------------- 1384 Query: 1281 EYSRVKIANRELEANGKVGATYSRDLLGITKASLAT--ESFISAASFQETTRVLTEAAVA 1338 Y D+LGIT+ LA +S + ASF++TT L +AA Sbjct: 1385 ---------------------YKGDVLGITRFGLAKMRDSVLQLASFEKTTDHLFDAAFY 1423 Query: 1339 GKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAA 1381 K D++ G+ E +I+G+ + GTG + P Sbjct: 1424 MKTDDVEGVSECIILGQGMSIGTGAFKVLQPLALDKVKIGPKP 1466 >UniRef50_O96452 DNA-directed RNA polymerase n=3 Tax=Eukaryota RepID=O96452_ANTLO Length = 1553 Score = 783 bits (2022), Expect = 0.0, Method: Composition-based stats. Identities = 286/1496 (19%), Positives = 527/1496 (35%), Gaps = 223/1496 (14%) Query: 15 EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74 + AI+ L SP+ IR+ S ++ PET+ P+ GL R+ +DY Sbjct: 9 KRVKAIQFGLFSPEEIRASSVALIRYPETL--ENGVPKESGLIDLRMGTTERDY------ 60 Query: 75 YKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRD 134 +C C V GHIEL P H+ F SRI +L+ Sbjct: 61 ---------LCATCNQ---DNYVCAGHFGHIELVKPMFHVGF----ISRIKKVLECVCFY 104 Query: 135 IERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDL 194 +V ++ I + L+ + Q ++K L Sbjct: 105 CSKVRINKNKTTITK-----------ESKHKLNFIWGICKNKMVCEDCNNRQPVIKKEGL 153 Query: 195 E-------QECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPP 247 +E + + LN KK+ F ++PE+MIL+VL V PP Sbjct: 154 SLFAYMKGEENNEGKVMLNGERVYNIFKKINNEDLEFLGFNIKYSRPEYMILSVLLVAPP 213 Query: 248 DLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALL 307 +RP + ++G DL Y +I N LK+ + AP I+R+ ++++Q V L+ Sbjct: 214 AVRPSIVMEGTLRGEDDLTYKYSDIIKSNQNLKKYEEEGAPAHIIRDYEQLVQFHVATLI 273 Query: 308 DNGRRGRAIT-GSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQC 366 DN G+ N RPLK+++ +KGK+GR R NL+GKRVD+S RSVIT P + L + Sbjct: 274 DNEISGQPQALQKNGRPLKAISARLKGKEGRLRGNLMGKRVDFSARSVITADPNISLEEL 333 Query: 367 GLPKKMALELFKPFIYGKLELRGLATTI------KAAKKMVEREEAVVWD---------- 410 G+P K+A+ P L L + + R + D Sbjct: 334 GVPMKVAMIHTFPERVTSFNLNKLRKLVSNGPNKYPGANYLIRRDGQRIDLNFSRGDVIL 393 Query: 411 -----ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQ 465 + ++ VL NR P+LH++ + A + +++G +L+ A YNADFDGD+ Sbjct: 394 EEGYVVERHMLNGDLVLFNRQPSLHKMSMMAHKVKVMDGLTFRLNLSATAPYNADFDGDE 453 Query: 466 MAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGM 525 M +H+P + ++ E LM+ + +I+SP + +P++ QD +LG+ +T V K E Sbjct: 454 MNLHMPQSYNSKAELSELMLVSKHIISPQSNKPVMGIIQDTLLGVCRLTSKGVFIKREEF 513 Query: 526 VLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPK 585 +Y S L + A +K I + G+ + +L R +I+ Sbjct: 514 C-------NLVYASNLVAR-ANIKPAIARPKILYTGKQLFSLTLPKLNFFR-DKVVIMDG 564 Query: 586 GLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAAR-SGASVGIDDM 644 L ++ + A +++ G + F D + Y S SVGI D Sbjct: 565 VLLNGVICKKSVGTAQGSLIHIIANDYGHEEITRFIDSLQKLISTYLTLISTFSVGIGDT 624 Query: 645 VIPEKKHEIIS----EAEAEVAEIQ-EQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMD 699 + + IS +A+AEV ++ + + G + N + + N ++KA Sbjct: 625 ISSPETMAHISRAIGDAKAEVKQLIYDSRRRGSLEKLPGMNLQETLESKINLALNKA--- 681 Query: 700 NLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM------------ 747 I+ E N + M +G++GS I Q+ G Sbjct: 682 -----RDISGTRAVESLNHLNGLKQMLKAGSKGSYINISQITSCVGQQNIESKRIPFGFR 736 Query: 748 --------AKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRR 799 G +T ++ GLN ++F G R+GL DTA KTA +GY+ RR Sbjct: 737 QRTLPHFVKNDYGPESRGFVTNSYLSGLNPEEFFFHAMGGREGLIDTACKTAETGYIQRR 796 Query: 800 LVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVP 859 +V +D + D + + G D + + + Sbjct: 797 IVKAMEDARIEYDGSVRGSS-TVYQFMYGEDNFDSTYLETQAFPVESRCSEIKLSVCSFK 855 Query: 860 RNTLLHEQWCDLLEENSVDAVKVRSVVSCD-------TDFGVCAHCYGRDLARGHIINKG 912 + +L L+ ++ + +C F + ++ Sbjct: 856 LHGMLENDSA--LQAIMEKEDRIFEMDACKYGGRDYTLPFNIARLVATAQRDYKVKVSDV 913 Query: 913 EAIGVI-AAQSIGEPGTQ---LTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVN 968 + V+ +S+ + +Q + + + + E + + + N + Sbjct: 914 DPYAVVRLKESLLDFVSQYYCMQKKMYMHEKSPKTTLCEQHKETEVNSINVVDNALQSTS 973 Query: 969 SS----------------GKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVA 1012 + K VI R + L + K+ + +++ + Sbjct: 974 PNISEDSFVHAFIRSCLRIKKVINYRISTLGVEWIANEIKKKFV---RGIISTNEMVGTL 1030 Query: 1013 GGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGK 1072 +++ +G + + G ++ + + Sbjct: 1031 AAQSIGEPATQMTLNTFHYAGVAQA--ITQGVPRLKEIINVAKNIRTPSHKIYLKPGSTI 1088 Query: 1073 DLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTL----------- 1121 + + N + + +++ Y + ED + + Sbjct: 1089 EQAKKVASEIEYIN-IEMVCSEIKIIYDPKVDTTIINEDRDFVEAYFEFPDEYVSLDTLN 1147 Query: 1122 ----------ARIPQESGGTKDITGGLPRV--ADLFEARR---PKEPAILAEISGIVSFG 1166 R+ + + I + +V D+F +E I + G+ + Sbjct: 1148 PWLLRLVVARDRLISNNLDFEFIAQKIKKVFHQDIFLLHSDANAEELVIRIRVLGMSANE 1207 Query: 1167 KETKGKRRLVITPVDGSD----------PYEEMIPKWRQLNVFEGERVERGDVISDGPEA 1216 + + ++ EE I + N+ + VE Sbjct: 1208 EFYRRLLNTILGIHLKGITNIRRIYLLREREEWILQTDGKNLKQLLLVEDILANKVYCND 1267 Query: 1217 PHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLE 1276 ++ + G+ AV I+ E+++V +G +N +H+ ++ M K Sbjct: 1268 LLEVYEVLGIEAVRECILRELRNVIEAEGSYVNFRHLYLLCDVMTLKG------------ 1315 Query: 1277 GEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLAT--ESFISAASFQETTRVLTE 1334 L GIT+ + SF+ET +L E Sbjct: 1316 -----------------------------LRGITRHGANRAATGALKRCSFEETVEILLE 1346 Query: 1335 AAVAGKRDELRGLKENVIVGRLIPAGTGYAYH-QDRMRRRAAGEAPAAPQVTAEDA 1389 A+ +R+ RG+ EN+++G+L P GTG D+ R+ + E A Sbjct: 1347 ASCFAERNYCRGVTENIMLGQLAPIGTGNTICILDKKALRSVIPVAKSFDFLGEVA 1402 >UniRef50_A4E9H2 DNA-directed RNA polymerase n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9H2_9ACTN Length = 1373 Score = 780 bits (2014), Expect = 0.0, Method: Composition-based stats. Identities = 422/992 (42%), Positives = 569/992 (57%), Gaps = 60/992 (6%) Query: 134 DIERVLYFESYVVIE--GGMTNLERQQILTEEQYLDALEEFGD-EFDAKMGAEAIQALLK 190 DIE E + + L + ++++E + + F MGAEA++ LL Sbjct: 86 DIEEECKDEKQLRTDAFNAFMKLSERDLISDEPLFREMTRYYSMYFKGGMGAEAVRDLLA 145 Query: 191 SMDLEQECEQLREELNETNSE-TKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDL 249 ++DL E E+L+ + + +S+ KR+K KR+++++AF++ GN P MIL V+PV+PPDL Sbjct: 146 AIDLPSEAEKLKAIIADEDSQKQKREKAVKRLEVVDAFLKGGNSPANMILDVIPVIPPDL 205 Query: 250 RPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDN 309 RP+V LDGGRFA SDLNDLYRRVINRNNRLKRLLDL AP IIV NEKRMLQE+VDAL DN Sbjct: 206 RPMVQLDGGRFAASDLNDLYRRVINRNNRLKRLLDLDAPAIIVNNEKRMLQESVDALFDN 265 Query: 310 GRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLP 369 GRRGR ++G RPLKSLA+ +KGKQGRFRQNLLGKRVDYSGRSVI P L LHQCGLP Sbjct: 266 GRRGRPVSGRGGRPLKSLAEALKGKQGRFRQNLLGKRVDYSGRSVIVTDPKLLLHQCGLP 325 Query: 370 KKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTL 429 K MALELFKPF+ +L G IK AK+ ++R VWDIL+EVI VLLNRAPTL Sbjct: 326 KTMALELFKPFVMKRLVELGKVENIKGAKRAIDRGATFVWDILEEVIDGRVVLLNRAPTL 385 Query: 430 HRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNN 489 HRL IQAFEPVL+EGKAI LHPLVC+ +NADFDGDQM+VHVPL+ +AQ EAR LM+S NN Sbjct: 386 HRLSIQAFEPVLVEGKAIHLHPLVCSPFNADFDGDQMSVHVPLSSQAQAEARVLMLSANN 445 Query: 490 ILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSG-LASLHARV 548 + SPA+G+P+ +PSQD+++G+YY+T+ GE V +A Y + A++ Sbjct: 446 LRSPASGKPVNIPSQDMIIGVYYLTQVRDGLPGENHVFASFDDALHAYDCRSEVDMQAKI 505 Query: 549 KVRI------------TEYEKDANGELVA--------KTSLKDTTVGRAILWMIVPKGLP 588 +VR+ T + NG+ KT+ +T++GR I Sbjct: 506 QVRVSAADANVINEDGTRIFRVKNGKNEFVDYDVTGNKTARFETSIGRIIFNRQCLPE-D 564 Query: 589 YSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPE 648 Y +N + K ++K++ C D I Y+GF YA R+G ++ + D +IP Sbjct: 565 YEFMNYKMVKGDVAKLVADCCDRYPEAKVGPILDAIKYSGFHYATRAGLTISVWDALIPA 624 Query: 649 KKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVIN 708 +K E++ A+A V +I E F+ G + ER+ +V++ W A D+V+ M+D Sbjct: 625 EKQELLDRAQANVDQINEYFEEGFINETERHIEVVNEWTACTDKVAALMLDMF------- 677 Query: 709 RDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLN 768 N +YMMADSGARGS Q+RQL GMRGLMA G I+ PI ANFREGL Sbjct: 678 --------DEENPLYMMADSGARGSKTQLRQLGGMRGLMADMSGETIDLPIKANFREGLL 729 Query: 769 VLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEG 828 L+YFIST+GARKGL DTA T++SGYLTRRLVDVAQD++V E+DCGTHEG+ +I G Sbjct: 730 PLEYFISTYGARKGLVDTASHTSDSGYLTRRLVDVAQDVIVREEDCGTHEGVTYNLIIPG 789 Query: 829 GDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSC 888 L ++GR EDV+ P + + + + + VK+R++++C Sbjct: 790 TTD---LNTDLVGRCFIEDVVAPDGTVLFEQDGYIEKVADIQKMVDAGLKKVKLRALLTC 846 Query: 889 DTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAAS-RAAAE 947 + +GVC CYG DL+ + G A+G+IAAQSIGEPGTQLTMRT H GG A + Sbjct: 847 RSKYGVCQKCYGWDLSTRRPVAIGTAVGIIAAQSIGEPGTQLTMRTIHSGGVAGVDDITQ 906 Query: 948 SSIQVKNKGSI-------KLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESY----K 996 V I L + SG L I +E L + Sbjct: 907 GLPTVSRMFDIVGNVNEKILGREAELAPYSGHLSIKPEKSEYVLTLTDSEDHTRVLDERR 966 Query: 997 VPYGAVLA--KGDGEQVAGGETVAN--WDPHTMPVITEVSGFVRFTDMIDGQTITRQTDE 1052 VP DG +V G+ + + + +T++ + T Q + Sbjct: 967 VPASVRFMPEIEDGCEVRAGDQITKGFVNFRNLRKLTDIESTMHTFVESVKDVYTSQGVD 1026 Query: 1053 LTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ 1084 L V+ R + + ++ Sbjct: 1027 LNDKHIEVLARQMLRRVQITNPGDSKYLLGQY 1058 Score = 245 bits (625), Expect = 9e-63, Method: Composition-based stats. Identities = 118/480 (24%), Positives = 175/480 (36%), Gaps = 22/480 (4%) Query: 944 AAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVL 1003 N L + + + + G V+ Sbjct: 713 GETIDLPIKANFREGLLPLEYFISTYGARKGLV---DTASHTSDSGYLTRRLVDVAQDVI 769 Query: 1004 AKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLD 1063 + + G T P T + T++ G D++ + + Sbjct: 770 VREEDCGTHEGVTYNLIIPGTTDLNTDLVGRCFIEDVVAPDGTVLFEQDGYIEKVADIQK 829 Query: 1064 SAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDTLA 1122 + LR L G G D+ + + V + I G L Sbjct: 830 MVDAGLKKVKLRALLTCRSKYGVCQKCYGWDLSTRRPVAIGTAVGIIAAQSIGEPGTQLT 889 Query: 1123 RIPQESGGT---KDITGGLPRVADLFE------ARRPKEPAILAEISGIVSFGKETKGKR 1173 SGG DIT GLP V+ +F+ + A LA SG +S E K Sbjct: 890 MRTIHSGGVAGVDDITQGLPTVSRMFDIVGNVNEKILGREAELAPYSGHLSIKPE---KS 946 Query: 1174 RLVITPVDGSDPYEEM----IPKWRQLN--VFEGERVERGDVISDGPEAPHDILRLRGVH 1227 V+T D D + +P + + +G V GD I+ G ++ +L + Sbjct: 947 EYVLTLTDSEDHTRVLDERRVPASVRFMPEIEDGCEVRAGDQITKGFVNFRNLRKLTDIE 1006 Query: 1228 AVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKI 1287 + V V+DVY QGV +NDKHIEV+ RQMLR+ I N G S +L G+ V+ Sbjct: 1007 STMHTFVESVKDVYTSQGVDLNDKHIEVLARQMLRRVQITNPGDSKYLLGQYVDRYEFAD 1066 Query: 1288 ANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGL 1347 + G +LG K + +S++S+ASF T VLTEAA+ GK D L L Sbjct: 1067 EVERVARLGGQAPVAEPVILGTLKVASNIDSWLSSASFIRTAGVLTEAAIEGKVDHLLDL 1126 Query: 1348 KENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQVTAEDASASLAELLNAGLGGSDNE 1407 K NVIVG+ IPAGTG + + + A + SL E L D + Sbjct: 1127 KSNVIVGKKIPAGTGLKPYANAKLTYRTADGYVDIDGPASPNAKSLPEWAPVELKDLDEQ 1186 >UniRef50_Q8SSC4 DNA-directed RNA polymerase II subunit RPB1 n=17 Tax=Eukaryota RepID=RPB1_ENCCU Length = 1599 Score = 778 bits (2008), Expect = 0.0, Method: Composition-based stats. Identities = 275/1482 (18%), Positives = 521/1482 (35%), Gaps = 221/1482 (14%) Query: 15 EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74 ++ +I+ L SPD +R+ S + PE + P+ GL R+ + Y Sbjct: 8 KQIKSIQFGLFSPDEVRNGSVALIVHPEVM--EGGVPKTGGLIDLRMGTTDRMY------ 59 Query: 75 YKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRD 134 +C+ CG + GHIEL P H+ + S+I +L+ Sbjct: 60 ---------LCQSCGGDNFSCP---GHFGHIELTKPMFHVGY----ISKIKKVLECVCFY 103 Query: 135 IERVLYFESYVV-IEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMD 193 ++ + + + + + + E + LD + E + L+ M Sbjct: 104 CSKIKIPRKGIKSTLSNVWGMSKGRSVCEGEVLDNGRSGCGNKQPVIKREGL-TLVAFMK 162 Query: 194 LEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLV 253 E E + + LN + KK++ + F ++PEWMILTVL V PP +RP + Sbjct: 163 GE-ESNEGKVMLNGERVYSIFKKISDEDSVYMGFDLKYSRPEWMILTVLLVPPPAVRPSI 221 Query: 254 PLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRG 313 ++G DL +I N LK+ AP IVR+ +++LQ V +DN G Sbjct: 222 VMEGSLRGEDDLTHKLADIIKSNGYLKKYEQEGAPGHIVRDYEQLLQFHVATFIDNDIGG 281 Query: 314 RAIT-GSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKM 372 + RPLKSL+ +KGK+GR R NL+GKRVD+S R+VIT P + L + G+P ++ Sbjct: 282 LPQALQKSGRPLKSLSARLKGKEGRIRGNLMGKRVDFSARTVITPDPNISLEEVGVPLEI 341 Query: 373 ALELFKPFIYGKLELRGLATTIK------AAKKMVEREEAVVWD---------------I 411 A P + L ++ V R + D + Sbjct: 342 AKIHTFPEKVTSFNIDRLEKLVRAGPNEHPGANYVLRSDGQKIDLNFNRSDIRLEEGYVV 401 Query: 412 LDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVP 471 + VL NR P+LH++ + A ++ K +L+ V + YNADFDGD+M +H+P Sbjct: 402 ERHMQSGDVVLFNRQPSLHKMSMMAHYARVMGNKTFRLNLSVTSPYNADFDGDEMNLHMP 461 Query: 472 LTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVLTGP 530 + ++ E L + + I+SP + +P++ QD + GL T RD + E M L Sbjct: 462 QSYTSKAELEELALVSRQIISPQSNKPVMGIVQDTLTGLRLFTLRDTFLNEREVMSLLYA 521 Query: 531 -----------KEAERLYRSGLASLHARV--KVRITEYEKDANGELVAKTSLKDTTV--- 574 + R G ++ K I + + G+ V L + Sbjct: 522 VNLEFCDIPLGDAVQTGLRKGKDYDIMKILRKPAIAKPMRLWTGKQVLSFVLPNLNYIGL 581 Query: 575 -----------GRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQ 623 +I + ++++ +++ + G K F D Sbjct: 582 SSEHDDDDKENIGDTRVIIQDGYIHSGVIDKKAAGATQGGLVHIIFNDFGPKRAAQFFDG 641 Query: 624 IMYTGFAYAA-RSGASVGIDDMVIPEKKHEI----ISEAEAEVAEIQEQFQSGLVTAGER 678 + A+ S+GI D + K ++ I +A+ EV+ + E + + Sbjct: 642 VQRMINAFMTGIHTFSMGIGDTIADPKTVKVVESAIRKAKEEVSALIENARQNRLERLPG 701 Query: 679 YNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIR 738 + + L ++ + N++ M +G++GS I Sbjct: 702 M--------TMKESFESHLNLVLNRARDVSGTSAQRSLSENNNMKTMVLAGSKGSFINIS 753 Query: 739 QLAGMRGLMAKPDGSI--------------------IETPITANFREGLNVLQYFISTHG 778 Q+ G I + ++ GL+ ++F G Sbjct: 754 QVTACVGQQNVEGKRIPFGFSHRTLPHFVKDDYTGKSRGFVENSYLTGLDPEEFFFHAMG 813 Query: 779 ARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDR 838 R+GL DTA+KTA +GY+ RRLV +D +V +D+ ++ + G D + Sbjct: 814 GREGLIDTAIKTAETGYIQRRLVKALEDAIVRQDESVRSGNGLVYQIKYGEDGFDATFLE 873 Query: 839 V----LGRVTAEDVLKPGTADILVPRNTLLHEQWCDLL-------------EENSVDAVK 881 + T + + L ++ + E+ +L E V + Sbjct: 874 SQKVDVKNFTKRYYIDMFGTEELEIKHGQVSEEVYGMLSSDVDLQKLLDQEYEWLVGEIF 933 Query: 882 VRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIG-GA 940 + + + RD+ + +++ ++A RTFH+ G Sbjct: 934 EGPPILSVGEVDIERDYKVRDIYQSAVMSPCNFTRILAT----------AKRTFHLSTGD 983 Query: 941 ASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELK---LIDEFGRTKESYKV 997 S + + + L+ + S ++++ R +++ K+ Sbjct: 984 VSPYYILEAHKHLTTSNRILNVLIRTNLSVKRVLLEHRLNTEAFNWVVEVIDAKILKAKI 1043 Query: 998 PYGAVLAKGDGEQV-AGGET----------VANWDPHTMPVITEVSGFVRFTDMIDGQTI 1046 ++ + V VA+ +P + E+ + + Sbjct: 1044 TPNEMVGTLAAQSVGEPATQMTLNTFHLAGVASTVTMGVPRLKEIFNVTKNLKTPSMKIY 1103 Query: 1047 TRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD--AQGNDVLIPGTDMPAQYFLPGK 1104 + + ++ + + E + D G ++ + A + P + Sbjct: 1104 LDREHGKSIEAAKTIQNEIECLTVKDLCLFSEIYYDPEITGTEISDDKDFVEAYFEFPDE 1163 Query: 1105 AI-----------VQLEDGVQISSG---DTLARIPQES--GGTKDITGGLPRVADLFEAR 1148 + + ++ + G + +A ++ GG I V + R Sbjct: 1164 DVDFSCLSPFLMRLVVDRAKLVGRGINLEYVAMFIRKELGGGAHVICSDENAVNMVVRVR 1223 Query: 1149 RPK------EPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE 1202 K A S + K +++ I+ + + Sbjct: 1224 TTKSEDESLNFYTTALNSLLRLQLGGYKNVKKVYISEDKDRKEWYLQTDGICLSQILGNP 1283 Query: 1203 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR 1262 V I +I G+ A I+ E+ V G +N +H+ ++ M Sbjct: 1284 AVNSRLTI---SNDLVEIAETLGIEAARESILRELTIVIDGNGSYVNYRHMSLLADVMTM 1340 Query: 1263 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLAT--ESFI 1320 L GIT+ + + Sbjct: 1341 ----------------------------------------RGYLCGITRHGVNKVGAGAL 1360 Query: 1321 SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362 +SF+ET +L +AA+ +++ RG+ EN+++G+L P GTG Sbjct: 1361 KRSSFEETVEILLDAALVSEKNICRGITENIMMGQLAPMGTG 1402 >UniRef50_B6KEC6 DNA-directed RNA polymerase n=5 Tax=Eukaryota RepID=B6KEC6_TOXGO Length = 1892 Score = 775 bits (2001), Expect = 0.0, Method: Composition-based stats. Identities = 259/1523 (17%), Positives = 491/1523 (32%), Gaps = 214/1523 (14%) Query: 13 KTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLC 72 + D ++ + S + +R S EV E P+ +GL R+ Sbjct: 15 PLKRVDQLQFGVFSSEQLRKMSVCEVTTSELY--EHGMPKANGLNDLRLGT--------- 63 Query: 73 GKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPL 132 C C ++V GH+ L P H FL ++ + + Sbjct: 64 ------LDYRQQCRTCNMDVKNCP---GHFGHLNLVKPVYHYGFLGAVLRVLRCVCYACG 114 Query: 133 RDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEF------------GDEFDAKM 180 + + + +++ + + +L E + +E + Sbjct: 115 KLLVDRRDPKMQHILKIRSPSRRLKHVLDACAGRKRCEGYLPLPADGMPVPLAEEGEGGC 174 Query: 181 GAEAIQALLKSMDLEQECEQLREELNETNSETKRK------------KLTKRIKLLEAFV 228 G + + ++ REE +E +E R+ ++++ + F Sbjct: 175 GCVQPRYFKEGPNIMVLFPDNREEGDEDVTEDIRRIFAAEEAYAVLRRISEEDLKMMGFD 234 Query: 229 QSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAP 288 P IL+ LP+ P +RP V G + DL ++ N LKR D + P Sbjct: 235 PERAHPASFILSTLPIPPLAVRPSVQY-GSARSEDDLTLKLVDIVKTNLSLKRQGD-SVP 292 Query: 289 DIIVRNEKRMLQEAVDALLDNGRRGRAI-TGSNKRPLKSLADMIKGKQGRFRQNLLGKRV 347 +++ +LQ V L DN G + T K+P+KS+ +KGK+GR R NL+GKRV Sbjct: 293 GAVLQEMVMLLQYHVTTLFDNDIPGMPVATTRGKKPIKSIRARLKGKEGRLRGNLMGKRV 352 Query: 348 DYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIK------AAKKMV 401 D+S R+VIT P L + G+PK +A+ L P L + L +K K V Sbjct: 353 DFSARTVITGDPMLPIDTVGVPKSIAMTLTYPEFVTPLNIGQLRQLVKTGPFDWPGAKYV 412 Query: 402 EREEAVVWD-----------------ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEG 444 R++ +D + + VL NR P+LH++ I + ++ Sbjct: 413 IRDDGSRFDLRHAKKGGEVVLEVGYRVERHMRDGDFVLFNRQPSLHKMSIMGHQVKILPY 472 Query: 445 KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQ 504 +L+ V + YNADFDGD+M +H+ + E + E + LM I+SP +P++ Q Sbjct: 473 STFRLNLSVTSPYNADFDGDEMNLHLAQSEETRAEIKHLMKVPKQIVSPQGNKPVMGIVQ 532 Query: 505 DVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELV 564 D +L + TR + MV + Y SG+ A + K L+ Sbjct: 533 DSLLAVSKFTRRDTFL-TKPMVYNLLLQIP--YWSGVVPPPAILHPVPLWTGKQLFSLLL 589 Query: 565 AKTSLKDTTVGRAILWM--------------------------IVPKGLPYSIVNQALGK 598 S + + M I L + + + Sbjct: 590 FFDSSVSGGNTKTRINMQRDVGAGLVDRKKENLFLSERDERVIIRQGELLAGKICKKIVG 649 Query: 599 KAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHE----II 654 A +++ + G + T F + + G +VG D++ E+ +E I+ Sbjct: 650 SASGSLIHLLWLEAGPERTKDFLSTLQKLTNYWLLHQGFTVGCKDIIANEETNEKVRDIL 709 Query: 655 SEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEE 714 +A+ EV ++ G + + + + + L + + E Sbjct: 710 DQAKKEVDKLIRLAHRGRLESQPG--------KSLRESFEARVNKELNSARERSGKVAAE 761 Query: 715 KQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSI-------------------- 754 N+I M +G++GS I Q+ G I Sbjct: 762 SLDESNNIMAMVLAGSKGSTINISQIMACVGQQNVEGKRIPFGFNERSLPHFHKFDYSPQ 821 Query: 755 IETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDC 814 + ++ GL + F G R+G+ DTA KT+ +GY+ RRL+ +D++V D Sbjct: 822 SRGFVENSYLSGLEPHELFFHAMGGREGIIDTACKTSETGYIQRRLMKAMEDVMVYYDRT 881 Query: 815 GTHEGIMMTPVIEGGD------------VKEPLRDRVLGRVTAEDVLKPGTADILVP--- 859 + + + G D L + L R+ DV + + Sbjct: 882 VRNSICEVLQFLYGEDGMSGEFVEDQTVELMTLDNEKLKRLYRHDVDQESYGKGWLSDEL 941 Query: 860 RNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIA 919 RN +L + E +A++ C F + ++ +A Sbjct: 942 RNEILTDYELQQPLEEEFEAIREDKNRLCRHIFKDGETKQHIPINILRLLEFAKAQFPSG 1001 Query: 920 AQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRN 979 S + ++ + ++ + V+ K + + Sbjct: 1002 DSSRKQSPIEIARKV-----NELLNEKLVVVKQTTNADAISAEVQENATIFMKAHLRTVL 1056 Query: 980 TELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGG--------ETVANWDPHTMPVITEV 1031 +L++ ++ + G V G +++ Sbjct: 1057 NSRRLLERECIGPKALQWLLGEVERHFHRALAHAGECVGAIAAQSIGEPATQMTLNTFHF 1116 Query: 1032 SGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIP 1091 +G + + + V + + L+ + + + DV Sbjct: 1117 AGVGSKNVTLGVPRLKELIN---------VAKQVKTPSLTVYLQDEIAMDQERAKDVQTH 1167 Query: 1092 GTDMPAQYFLPGKAIVQL-EDGVQISSGDTLARIPQESGGTKDITGG-----LPRVADLF 1145 ++ + I D D L R+ Sbjct: 1168 LEHTTLDRVTVVSQVIYDPDPTDTIIPQDRQWVRDYYEFPDDDELPSNLGRWLLRIQMAS 1227 Query: 1146 EARRPKEPA------------ILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKW 1193 + K+ E+ I + R+ + G E+ Sbjct: 1228 KVMIDKKLTMKEIGEKIYAEFPNEELDCIWTDDNSDDLVLRIRLKQQPGEGEDEDKDEDD 1287 Query: 1194 RQLNVFEGERVERGDVISDGPEA-PHDILRLRGVHAVTRYIVNEVQD-------VYRLQG 1245 + ++ +I ++ N++ V G Sbjct: 1288 VAEAGDRFLQKLMVQCLAGITLRGITNISKVYMREEARTIYNNQLGKFERTNNWVLDTDG 1347 Query: 1246 VKINDKHIEVIVRQMLRKATIVNAGSSDFL--EGEQVEYSRVKIANRELEANGKVGATYS 1303 + D V+ M+ + ++ G + + R + + Y Sbjct: 1348 CNLED----VLPIPMVDDTRTTSNDMTEIFHVLGIEAVRRALLRELRAVISFDGSYVNYR 1403 Query: 1304 ------------RDLLGITKASLAT--ESFISAASFQETTRVLTEAAVAGKRDELRGLKE 1349 L+ IT+ + + + SF+ET +L EAAV + D LRG+ E Sbjct: 1404 HLAILCDTMTQKGYLMSITRHGINRIDKGPLMKCSFEETVEILMEAAVFAEADHLRGVTE 1463 Query: 1350 NVIVGRLIPAGTGYAYHQDRMRR 1372 N+++G+L P GTGY + Sbjct: 1464 NIMMGQLCPLGTGYFDVLIDEEK 1486 >UniRef50_P04051 DNA-directed RNA polymerase III subunit RPC1 n=14 Tax=Dikarya RepID=RPC1_YEAST Length = 1460 Score = 773 bits (1995), Expect = 0.0, Method: Composition-based stats. Identities = 273/1514 (18%), Positives = 504/1514 (33%), Gaps = 238/1514 (15%) Query: 5 LKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFK-PERDGLFCARIFG 63 +K + + ++ + S I + S EV + + + P+ +G ++ Sbjct: 1 MKEVVVSETPKRIKGLEFSALSAADIVAQSEVEVSTRDLFDLEKDRAPKANGALDPKMGV 60 Query: 64 PVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSR 123 E C C + GH++LA P HI + K+ Sbjct: 61 SSSSLE---------------CATCHGNLASCH---GHFGHLKLALPVFHIGYFKATIQI 102 Query: 124 IGLLLDMPLRDIERVLYFESYV--VIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMG 181 + + + ++ + G+ NL R IL + + A G Sbjct: 103 LQGICKNCSAILLSETDKRQFLHELRRPGVDNLRRMGILKKILDQCKKQRRCLHCGALNG 162 Query: 182 ------------------------------------AEAIQALLKSMDLEQECEQLREEL 205 E + L + +LE+ ++ ++L Sbjct: 163 VVKKAAAGAGSAALKIIHDTFRWVGKKSAPEKDIWVGEWKEVLAHNPELERYVKRCMDDL 222 Query: 206 NETNSETKRKKLTKRIKLLEAFVQS--GNKPEWMILTVLPVLPPDLRPLVPL-DGGRFAT 262 N + K++ L + +PE I LP P +RP V + D Sbjct: 223 NPLKTLNLFKQIKSADCELLGIDATVPSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNE 282 Query: 263 SDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGR------RGRAI 316 DL ++ ++ +K LD + LQ V +++ G + Sbjct: 283 DDLTVKLTEIVWTSSLIKAGLDKGISINNMMEHWDYLQLTVAMYINSDSVNPAMLPGSSN 342 Query: 317 TGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALEL 376 G +P++ +KGKQGRFR NL GKRVD+SGR+VI+ P L + + +P ++A L Sbjct: 343 GGGKVKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVL 402 Query: 377 FKPFIYGKLELRGLATTIKAAKKMVER------------------------EEAVVWDI- 411 P + L I + + + D+ Sbjct: 403 TYPEKVTRYNRHKLQELIVNGPNVHPGANYLLKRNEDARRNLRYGDRMKLAKNLQIGDVV 462 Query: 412 LDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVP 471 + VL NR P+LHRL I + + + +L+ VC YNADFDGD+M +HVP Sbjct: 463 ERHLEDGDVVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVP 522 Query: 472 LTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKG--------- 522 T EA+ EA LM NN+L+P +GEPII +QD + G Y ++ Sbjct: 523 QTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRATLTQLLSM 582 Query: 523 -----EGMVLTGPKEAERLY-RSGLASLHARVKVRITEYE------KDANGELVAKTSLK 570 E + P + Y +G +K K+ SL Sbjct: 583 MSDGIEHFDIPPPAIMKPYYLWTGKQVFSLLIKPNHNSPVVINLDAKNKVFVPPKSKSLP 642 Query: 571 DTTVGRAILWMIVPKGLPYSIVNQALGKKAIS-KMLNTCYRILGLKPTVIFADQIMYTGF 629 + +I + ++++++ + T R G + +++ Sbjct: 643 NEMSQNDGFVIIRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMAKLCA 702 Query: 630 AYAARSGASVGIDDMV----IPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDI 685 + G S+GI+D+ + +KK E++ A + E+ F G + N+ + Sbjct: 703 RFLGNRGFSIGINDVTPADDLKQKKEELVEIAYHKCDELITLFNKGELETQPGCNEEQTL 762 Query: 686 WAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRG 745 A +SK + D + ++N+ +MA G++GS + Q+ + G Sbjct: 763 EAKIGGLLSKVREE--------VGDVCINELDNWNAPLIMATCGSKGSTLNVSQMVAVVG 814 Query: 746 LM-----AKPDGS---------------IIETPITANFREGLNVLQYFISTHGARKGLAD 785 PDG + + +F GL+ ++ R+GL D Sbjct: 815 QQIISGNRVPDGFQDRSLPHFPKNSKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVD 874 Query: 786 TALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTA 845 TA+KTA +GY++RRL+ +DL D+ + GGD +PL G Sbjct: 875 TAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSANGIVQFTYGGDGLDPLEME--GNAQP 932 Query: 846 EDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLAR 905 + + + N + E + + + D C DL + Sbjct: 933 VNFNRSWDHAYNITFNNQDKGLLPYAIMETANEILGPLEERLVRYDNSGCLVKR-EDLNK 991 Query: 906 GHIINKGEAIGVIAA---QSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSN 962 +++ +A + I T L G +Q + N Sbjct: 992 AEYVDQYDAERDFYHSLREYINGKATALANLRKSRGMLGLLEPPAKELQGIDPDETVPDN 1051 Query: 963 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQV-AGGET----- 1016 VK+ V+ ++ S L++ ++ G + + + G Sbjct: 1052 VKTSVSQLYRISEKSVRKFLEIAL---FKYRKARLEPGTAIGAIGAQSIGEPGTQMTLKT 1108 Query: 1017 -----------------VANWDPHTMPVITEVSGFVRFTD-MIDGQTITRQTDELTGLSS 1058 + + + T + V D + + E T LS Sbjct: 1109 FHFAGVASMNVTLGVPRIKEIINASKVISTPIINAVLVNDNDERAARVVKGRVEKTLLSD 1168 Query: 1059 LVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSG 1118 + ++ + + + + D+ K +Q D I Sbjct: 1169 VAFYVQDVYKDNLSFIQVRIDLGTIDKLQLELTIEDIAVAITRASKLKIQASDVNIIGKD 1228 Query: 1119 DTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKET-----KGKR 1173 + E K I+ A+ P E + + + + Sbjct: 1229 RIAINVFPEGYKAKSISTS---------AKEPSENDVFYRMQQLRRALPDVVVKGLPDIS 1279 Query: 1174 RLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYI 1233 R VI D E ++ + +V + V ++ ++ + G+ A I Sbjct: 1280 RAVINIRDDGKR-ELLVEGYGLRDVMCTDGVIGSRTTTN---HVLEVFSVLGIEAARYSI 1335 Query: 1234 VNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELE 1293 + E+ G+ ++ +HI+++ M Sbjct: 1336 IREINYTMSNHGMSVDPRHIQLLGDVMT-------------------------------- 1363 Query: 1294 ANGKVGATYSRDLLGITKASLAT--ESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 Y ++LGIT+ L+ +S + ASF++TT L +AA K+D + G+ E + Sbjct: 1364 --------YKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECI 1415 Query: 1352 IVGRLIPAGTGYAY 1365 I+G+ + GTG Sbjct: 1416 ILGQTMSIGTGSFK 1429 >UniRef50_C5DJG5 DNA-directed RNA polymerase n=3 Tax=Saccharomycetales RepID=C5DJG5_LACTC Length = 1460 Score = 771 bits (1990), Expect = 0.0, Method: Composition-based stats. Identities = 276/1522 (18%), Positives = 519/1522 (34%), Gaps = 255/1522 (16%) Query: 5 LKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTF-KPERDGLFCARIFG 63 +K + + ++ + S I + S E+ + + KP+ G R+ Sbjct: 1 MKEVVVDIAPKRIKGLEFSALSASDIVAQSKVEISTRDLFDLENGRKPKSGGALDTRMGV 60 Query: 64 PVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSR 123 E C C + GHI+L+ P H+ + K+ Sbjct: 61 SSSQAE---------------CSTCHGNLASCH---GHFGHIKLSLPVFHVGYFKATIQV 102 Query: 124 IGLLLDMPLRDIERVLYFESYV--VIEGGMTNLERQQILTEEQYLDALEEFG-------- 173 + + + ++ + G+ NL R IL + + Sbjct: 103 LQSICKTCAALLLSEEDKHQFLSELRRPGIDNLRRMGILKKVVDQCKKQRRCLRCGSLNG 162 Query: 174 --DEFDAKMGAEAIQALLKSMDL--------------------------EQECEQLREEL 205 + A G+ +++ L + E+ ++ ++L Sbjct: 163 VVKKAAAGSGSASLKILHDTFRWVGKKSAPEKDKWVGDWKTVLAHNPELERYVKKCMDDL 222 Query: 206 NETNSETKRKKLTKRIKLLEAFVQ--SGNKPEWMILTVLPVLPPDLRPLVPL-DGGRFAT 262 N + K++ L +PE I LP P +RP V + D Sbjct: 223 NPLKTLNLFKQVAPEDCELLGIDSTVKSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNE 282 Query: 263 SDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAI-----T 317 DL ++ ++ +K L+ + + LQ AV +++ A+ T Sbjct: 283 DDLTVKLTEIVWTSSLIKAGLEKGISINNMMEQWDYLQLAVAMYINSDSVNPAMMPGGST 342 Query: 318 GSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELF 377 G +P++ +KGKQGRFR NL GKRVD+SGR+V++ P L + + +P ++A L Sbjct: 343 GGKTKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVVSPDPNLSIDEVAVPDRVAKVLT 402 Query: 378 KPFIYGKLELRGLATTIKAAKKMVEREEAVVWD-------------------------IL 412 P + + + L + ++ + Sbjct: 403 YPEMVTRYNKQKLQQLVINGPNEHPGANYLLKKDEEARRNLRYGDRMKLARNLQYGDVVE 462 Query: 413 DEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPL 472 + VL NR P+LHRL I + + + +L+ VC YNADFDGD+M +HVP Sbjct: 463 RHLEDGDVVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQ 522 Query: 473 TLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVLTGPK 531 T EA+ EA LM NN+L+P +GEPII +QD + G Y ++ +D ++ E + L Sbjct: 523 TEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFSRAEFVQLLSMM 582 Query: 532 EAERLYRSGLASLHARVKVRITEYEKDANGELVAKTS----------------------L 569 L + +K K L+ L Sbjct: 583 SDGNLQFD--IPPPSIMKPYYMWTGKQVFSLLIRPNKESPVVINLDAKNKVYIPPKDKSL 640 Query: 570 KDTTVGRAILWMIVPKGLPYSIVNQALGKKAIS-KMLNTCYRILGLKPTVIFADQIMYTG 628 + +I + ++++++ + T R G + +++ Sbjct: 641 PNEMSINDGYVVIRGSKILSGVMDKSVLGDGKKHSVFYTILRDFGPQEAAFAMNRMAKLC 700 Query: 629 FAYAARSGASVGIDDMV----IPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVID 684 + G S+GI+D+ + KK ++ +A A+ + + F G + N+ Sbjct: 701 ARFLGNRGFSIGINDVTPGFELKNKKEIMVEDAYAKCDALIDLFNKGKLETQPGCNEEQT 760 Query: 685 IWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMR 744 + A +SK + + ++ + NS +MA+ G++GS + Q+ + Sbjct: 761 LEAKIGGLLSKVREE--------VGEVCIKELDNLNSCLIMANCGSKGSTLNVSQMVAVV 812 Query: 745 GLM-----AKPDGS---------------IIETPITANFREGLNVLQYFISTHGARKGLA 784 G PDG + + +F GL+ ++ R+GL Sbjct: 813 GQQIISGNRVPDGFQDRSLPHFLKNSKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLV 872 Query: 785 DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVT 844 DTA+KTA +GY++RRL+ +DL D+ + GGD +P+ G Sbjct: 873 DTAVKTAETGYMSRRLMKSLEDLSCQYDNTIRTSSNGIVQFTYGGDGLDPIDME--GNAQ 930 Query: 845 AEDVLKPGTADILVPRNTLLHEQWCDLLEE------NSVDAVKVRS--------VVSCDT 890 + + V N + + + ++ VR D Sbjct: 931 PVNFSRSWEHANNVTFNHVDKPLLPYQIMQQTNGVLKPLEEKLVRYDNLGNELDPSLQDR 990 Query: 891 DFGVCAHCYGRDLA---RGHIINKGEAIGVIAA-----QSIGEPGTQLTMRTFHIGGAAS 942 + R+ R ++ K + I A + + EP +L G AS Sbjct: 991 VEYIDQDDAERNFYKSLRDYMYEKASHLANIRAHKGLKEFLDEPAAELQAMDLDEGAPAS 1050 Query: 943 ---------RAAAESSIQVKNKGSIKLSNVK----SVVNSSGKLVITSRNTELKLIDEFG 989 + +++ ++ K K + V + G I T++ L Sbjct: 1051 ALASVDQLCKISSKLVLKFLEIAIFKYHKAKVEPGTAVGAVGAHSIGEPGTQMTLKTFHF 1110 Query: 990 RTKESYKVPYG--AVLAKGDGEQVAGGETVAN--WDPHTMPVITEVSGFVRFTDMIDGQT 1045 S V G + + +V + + + V G + T + D Sbjct: 1111 AGVASMNVTLGVPRIKEIINASKVISTPIINAVLVNNNDERAARVVKGRIEKTLLSDVAF 1170 Query: 1046 ITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKA 1105 + + V +D +L D+ + T Sbjct: 1171 YIQDVYKDNMSFLQVKVDLGTIEKLQLELTV---------EDIAVAITRAAKLKIAASDV 1221 Query: 1106 IVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSF 1165 + +D V I+ +A++ S K+ P +LF + A+ GIV Sbjct: 1222 SIMGKDKVNINVYPEMAKLKSISTSAKE-----PVENELFYRMQHLRRAL----PGIVVK 1272 Query: 1166 GKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRG 1225 G + + I E ++ + V + V + ++ + G Sbjct: 1273 GLPDIARAVINIKDDGS---RELLVEGYGLREVMTTDGVIG---MKTKTNHILEVFSVLG 1326 Query: 1226 VHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRV 1285 + A IV E+ G+ ++ +H++++ M Sbjct: 1327 IEAARTSIVGEIDYTMSNHGMSVDPRHVQLLGDVMT------------------------ 1362 Query: 1286 KIANRELEANGKVGATYSRDLLGITKASLAT--ESFISAASFQETTRVLTEAAVAGKRDE 1343 Y ++LGIT+ L+ +S + ASF++TT L +AA K+D Sbjct: 1363 ----------------YKGEILGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDA 1406 Query: 1344 LRGLKENVIVGRLIPAGTGYAY 1365 + G+ E +I+G+ + GTG Sbjct: 1407 VEGVSECIILGQTMSIGTGAFK 1428 >UniRef50_B6AG69 DNA-directed RNA polymerase n=1 Tax=Cryptosporidium muris RN66 RepID=B6AG69_9CRYT Length = 1927 Score = 768 bits (1983), Expect = 0.0, Method: Composition-based stats. Identities = 277/1560 (17%), Positives = 513/1560 (32%), Gaps = 245/1560 (15%) Query: 5 LKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGP 64 L + + ++ +I+ + SPD+IR +S EV + KP+ GL + Sbjct: 7 LNNPFSNKELKKIYSIEFGVLSPDLIRRYSVLEVTISDLY--ENGKPKSGGLNDPLMGTI 64 Query: 65 VKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRI 124 V+CE C +++ HIEL P HI F+ + + Sbjct: 65 ---------------DYHVLCETCHMDIKTCP---GHFAHIELGKPMFHIGFVSVVLKIL 106 Query: 125 GLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEA 184 + + + + V+ + +L Q+++ + D G Sbjct: 107 RCVCFACSKLFIDPMDPKFKVIQKTRNPHLRLQRLVEISKTYSRCVISSD----GSGCGF 162 Query: 185 IQALLKSM-------------DLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSG 231 +Q + +++ E R L+ K++T L F Sbjct: 163 VQPQISKDGYNLYIRQHEESRNMDDESTDSRRMLSAEEVLNIFKRITDEDMKLLGFDPKR 222 Query: 232 NKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDII 291 P W + T+LP+ PP +RP V R + DL ++++ N LKR + L +PD I Sbjct: 223 CNPCWFVTTILPIPPPAVRPYVQFGSDR-SEDDLTLKLQQIVKLNENLKRQIRLGSPDHI 281 Query: 292 VRNEKRMLQEAVDALLDNGRRGRAI-TGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYS 350 + +LQ + L++N G + RP+KSL +KGK GR R NL+GKRVD+S Sbjct: 282 LNEMIAVLQYHLVTLVNNDLPGLPQSRTRSNRPIKSLRARLKGKDGRIRGNLMGKRVDFS 341 Query: 351 GRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI------KAAKKMVERE 404 R+VIT P L + Q G+P +A+ L P I + L + + ++ Sbjct: 342 ARTVITGDPNLSVDQVGVPYSIAMTLTYPEIVTPYNIEELKELVERGPYEWPGATSIVQD 401 Query: 405 EAVV--------------------WDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEG 444 + W + + + VL NR P+LH++ I ++ Sbjct: 402 DGTKIDLRFCNRSNNNANCVLQYGWKVERHMKNDDLVLFNRQPSLHKMSIMGHRVKILPY 461 Query: 445 KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQ 504 +L+ V + YNADFDGD+M +H+ + E + E + LMM I+SP P+I Q Sbjct: 462 STFRLNLSVTSPYNADFDGDEMNLHLAQSYETRSEIKHLMMVPKQIVSPQGNRPVIGIVQ 521 Query: 505 DVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKD------ 558 D +LGL+ +TR + + Y +G+ A ++ + K Sbjct: 522 DSLLGLFLLTRKSTFLTKDRFLQLLLCIP---YWNGIIPPPAILRPQPLWTGKQIITVLL 578 Query: 559 --------------------------------ANGELVAKTSLKDTTVGRAILW--MIVP 584 + + AK ++ + +I Sbjct: 579 TFTTDLGEPIELNLMRDGSIVNIRSSNTSGNKSENKDEAKETIINNPWISEYDNQVLIQQ 638 Query: 585 KGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDM 644 I+ + + + +++ + +G + T +F + G +VG D+ Sbjct: 639 GEHICGIITKKIAGSSSGSLIHILWNEIGPEKTGLFLTYTQMVVNTWLLEHGFTVGCQDI 698 Query: 645 V----IPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDN 700 EK + ++ V +I + Q G + + V + + Sbjct: 699 QPLNFTLEKIMTSLENSKLHVQQIIRRAQKGQLDCQPGKSLV--------ESFEAQVNQE 750 Query: 701 LQTETVINRDGQEEKQVSF-NSIYMMADSGARGSAAQIRQLAGMRGLM------------ 747 L + ++ E N++ M G++GS I Q+ G Sbjct: 751 LNSAREMSGIIATENLDPSKNNMIAMVQCGSKGSTINISQIMACVGQQNVEGKRIPFGFR 810 Query: 748 --------AKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRR 799 G ++ ++ GL + F G R+G+ DTA KT+ +GY+ RR Sbjct: 811 DRSLPHFLKYDYGPESRGFVSNSYLSGLTPQEVFFHAMGGREGIIDTACKTSETGYIQRR 870 Query: 800 LVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVK--EPLRDRVLGRVTAEDVLKPGTADIL 857 L+ +D +V D + + + G D E + D+V+ + + + Sbjct: 871 LIKAMEDCMVQYDRTVRNCCGDIIQFLYGEDGMAGEFIEDQVIELLQMDPSVFQHKYR-- 928 Query: 858 VPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYG---RDLARGHIINKGEA 914 + + H +W + S + +K + + R+L I GE Sbjct: 929 ---HNMEHPRWGSNWQGVSSNTIKNLQFDLESQNILNTEYKQLVLDRELLGQDIFPDGET 985 Query: 915 IGVIAAQSIGEPGTQLTMRTFHIGGAASR--------AAAESSIQVKNKGSIKLSNVKS- 965 + +IG Q+ + F ++ + N+ + Sbjct: 986 RQHLPI-NIG-RIIQMAQQKFPRYNVDDDSGRFEWGPVTIIKQVEGLLDKLLLWKNMSTK 1043 Query: 966 --------------VVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAK------ 1005 ++ K T ++ + E ++ A Sbjct: 1044 DNLDNPKLPPTFDNIIAEVQKNATTLLGIHIRSALASKKILEIDRLGPTAFEWVIGEIQH 1103 Query: 1006 -------GDGEQV--AGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGL 1056 GE V +++ +G + + + + Sbjct: 1104 QFYRSLAHSGEMVGTIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLRELINVAKNV 1163 Query: 1057 SSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQIS 1116 + + E + + + + T Y + D +S Sbjct: 1164 RTPTLTIYLENSIANDQEHAKDVLTLLEHTTLENITTMAHILYDPKFDETIVEADKQWVS 1223 Query: 1117 S--------------GDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGI 1162 G L RI S D + + D + E+ I Sbjct: 1224 DYYEFPDDVDIKSRLGTWLLRIQLNSKLVTDKKLSMKEIGD-----KILMEFSNDELDCI 1278 Query: 1163 VSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGER-------VERGDVISDGPE 1215 + + RL I ++ ++ + + + +G VE + Sbjct: 1279 WTDDNSDELVLRLRIKNLEPTNSGTQDTVMNSEFQIDDGHYQPPTPPVVEEHKFLEKLMT 1338 Query: 1216 APHDILRLRGV----------HAVTRY------IVNEVQDVYRLQGVKI----------N 1249 + LRG+ VTRY IV + Q V G + + Sbjct: 1339 ECLSQITLRGISNIKKVYMKEEQVTRYDILSQKIVRDNQWVLDTDGCNLEAVLCHEAIDS 1398 Query: 1250 DKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGI 1309 + I + ++ I + E V N A T L+ I Sbjct: 1399 TRTISNDITEVFSVLGIEAVRRALLKELRTVISFDGSYVNYRHLALLCDNMTQKGHLMSI 1458 Query: 1310 TKASLAT--ESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQ 1367 T+ + + SF+ET +L +AA+ G+ D L G+ ENV+VG+L P GT Sbjct: 1459 TRHGMNRVDRGPLQKCSFEETVEILMDAAMFGETDYLNGVSENVMVGQLSPYGTACFDLL 1518 >UniRef50_C4LL70 DNA-directed RNA polymerase subunit beta' n=65 Tax=Actinobacteridae RepID=RPOC_CORK4 Length = 1332 Score = 768 bits (1982), Expect = 0.0, Method: Composition-based stats. Identities = 412/960 (42%), Positives = 570/960 (59%), Gaps = 69/960 (7%) Query: 155 ERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKR 214 +Q I+ E Y + ++ + D F MGAEAIQ L+K+ DLE E E+L E + + + + Sbjct: 231 PKQMIVDETIYSELVDRYEDYFTGGMGAEAIQTLIKNFDLEAEAEKLSEVIRDGKGQKQV 290 Query: 215 KKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVIN 274 + L KR++++ AF++SGN P M+L +PV+PP+LRP+V LDGGRFATSDLNDLYRRVIN Sbjct: 291 RAL-KRLRVVAAFLRSGNDPAAMVLDAIPVIPPELRPMVQLDGGRFATSDLNDLYRRVIN 349 Query: 275 RNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGK 334 RNNRLKR++DL AP+IIV NEKRMLQE+VDAL DNGRRGR +TG RPLKSL+D++KGK Sbjct: 350 RNNRLKRMIDLGAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGK 409 Query: 335 QGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI 394 QGRFRQNLLGKRVDYSGRSVI VGP L+LHQCGLPK MALELFKPF+ +L + A I Sbjct: 410 QGRFRQNLLGKRVDYSGRSVIIVGPQLKLHQCGLPKLMALELFKPFVMKRLVEKSYAQNI 469 Query: 395 KAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVC 454 ++AK+MVER+ VWD+L+E I EHPV+LNRAPTLHRLGIQAFEPVL+EGKAIQLHPL C Sbjct: 470 RSAKRMVERQRPEVWDVLEEAIAEHPVMLNRAPTLHRLGIQAFEPVLVEGKAIQLHPLAC 529 Query: 455 AAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT 514 A+NADFDGDQMAVH+PL+ EAQ EAR LM+++NNILSPA+G+P+ +P D+V GLY++T Sbjct: 530 EAFNADFDGDQMAVHLPLSAEAQAEARVLMLASNNILSPASGKPLAMPRLDMVTGLYFLT 589 Query: 515 RDCVNAK--GEGMV------------LTGPKEAERLYRSGLASLHARVKVRITEYEKD-- 558 + + GEG + EA G+ L A ++VRI+ Sbjct: 590 LEKSEDQLGGEGAYHEADENGPKRGTYSSFAEALMARDRGVLGLQAPIEVRISHLRPPED 649 Query: 559 ------ANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRIL 612 +G + TT+GR + ++P Y VN + KKA + ++N Sbjct: 650 IEAELFPDGWQRGQKWTAHTTLGRIMFNELLP--WNYPFVNGVMAKKAQAVIINDLAARY 707 Query: 613 GLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGL 672 + D++ GF +A RS ++ +DD+++ K EI+ E + A I+++ G Sbjct: 708 PMITVAQTVDKMKDAGFYWATRSCVTISMDDVLVLPNKEEILQRYEKQAATIEKKLARGK 767 Query: 673 VTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARG 732 + ERY ++D+W D V +++ N I M+ SGA G Sbjct: 768 INNEERYRSLVDLWKECTDFVGESVEKIY---------------PDDNPIPMIVKSGAAG 812 Query: 733 SAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTAN 792 + QI LAGM+G++ G I PI +FREGL+VL+YF ++HG+RKGLADTAL+TA+ Sbjct: 813 NMRQIWTLAGMKGMVTNSRGDYITRPIKTSFREGLSVLEYFNNSHGSRKGLADTALRTAD 872 Query: 793 SGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGD----------VKEPLRDRVLGR 842 SGYLTRRLVDVAQD++V EDDCGT +G+ + D E L ++GR Sbjct: 873 SGYLTRRLVDVAQDVIVREDDCGTRKGLEVDVAKPVLDAEGNETGEFTRAEFLETALIGR 932 Query: 843 VTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRD 902 A+D + D++ R + + + V VR+V+ C+T GVCA CYGR Sbjct: 933 YLAKDAV-NDNGDVIYERGAFVGDAEAKKMVAEGVRTATVRTVMMCETATGVCATCYGRS 991 Query: 903 LARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLS- 961 +A G ++ GEA+G++AAQSIGEPGTQLTMRTFH G +V+ ++ Sbjct: 992 MATGQKVDIGEAVGIVAAQSIGEPGTQLTMRTFH-QGGVGGDITGGLPRVQELFEARVPK 1050 Query: 962 NVKSVVNSSGKLV-----------ITSRNTELKLIDEFGRTKESYKV---PYGAVLAKGD 1007 N + ++ G + IT N E +++ E ++ V P G Sbjct: 1051 NQAPIASTEGTIKLEDDGNFYTLTITPDNGEDEVVYEKLSKRQGLAVTQEPGGFEHQLRT 1110 Query: 1008 GEQVAGGETV--ANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSA 1065 G+ V G+ + DPH + + V+G + + Q + +++ Sbjct: 1111 GDHVVTGQPLLRGAPDPHEVLRVEGVTGVQKHLIEQVQKVYRDQGVAIHDKHIEIIVRQM 1170 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 123/359 (34%), Positives = 180/359 (50%), Gaps = 20/359 (5%) Query: 1062 LDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDT 1120 +R + A G G M + V + I G Sbjct: 959 KKMVAEGVRTATVRTVMMCETATGVCATCYGRSMATGQKVDIGEAVGIVAAQSIGEPGTQ 1018 Query: 1121 LARIPQESGGTKDITGG-LPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITP 1179 L GG G LPRV +LFEAR PK A +A G + ++ L ITP Sbjct: 1019 LTMRTFHQGGVGGDITGGLPRVQELFEARVPKNQAPIASTEGTIKL-EDDGNFYTLTITP 1077 Query: 1180 VDGSDPYEEMI------------PKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVH 1227 +G D P + + G+ V G + G PH++LR+ GV Sbjct: 1078 DNGEDEVVYEKLSKRQGLAVTQEPGGFEHQLRTGDHVVTGQPLLRGAPDPHEVLRVEGVT 1137 Query: 1228 AVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKI 1287 V ++++ +VQ VYR QGV I+DKHIE+IVRQMLR+ T+V++GS++ L G ++ + + Sbjct: 1138 GVQKHLIEQVQKVYRDQGVAIHDKHIEIIVRQMLRRLTVVDSGSTELLPGSLIDRNEARA 1197 Query: 1288 ANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGL 1347 N+ + NG GA + ++++GITKASLATES++SAASFQETTRVLT+AA+ + D+L GL Sbjct: 1198 INKAVATNGGEGAAFRQEIMGITKASLATESWLSAASFQETTRVLTDAAINKRSDKLIGL 1257 Query: 1348 KENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQVTAEDASASLAELLNAGLGGSDN 1406 KENVI+G+LIPAGTG + +++ + E + A + S + G Sbjct: 1258 KENVIIGKLIPAGTGISRYRN-----ISVEPTEEARAQAFSMNTSYGDGFYGEDGAYGE 1311 >UniRef50_A2DEX5 DNA-directed RNA polymerase n=1 Tax=Trichomonas vaginalis RepID=A2DEX5_TRIVA Length = 1657 Score = 767 bits (1981), Expect = 0.0, Method: Composition-based stats. Identities = 277/1523 (18%), Positives = 494/1523 (32%), Gaps = 299/1523 (19%) Query: 25 ASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVI 84 IR S V + E R KP+ G R+ + I Sbjct: 1 MDTQEIRKLSTVFVHENELYEPRDLKPKVGGTLDLRLGA---------------ASKNQI 45 Query: 85 CEKCGVEVTQTKVRRERMGHIELASPTAHIWFL-------KSLPSRIGLLLDMPLRDIER 137 C+ CG G +EL P +I F K + +L R Sbjct: 46 CQTCGQPQENCP---GHFGSLELVLPVYNIGFYPAILHCLKCICKTCSNILLPNEEINSR 102 Query: 138 VLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFG-----------------------D 174 + F S + ++ E + + G D Sbjct: 103 LKKFYSKPPQTVSAKIDRVKALMKECEKVTICPHCGAINGPVKKTKTTLIITHNVGQKND 162 Query: 175 EFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKP 234 + ++ + +K D ++ + + +++ + K + R L S + P Sbjct: 163 KLREPFLSKFSKLDIKGDDYKKYLDNICDDITPLRALQLFKAIPTRQIPLLLSGFSVSSP 222 Query: 235 EWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRN 294 MI+T + + P +RP V G DL ++ N+ +++ +++ Sbjct: 223 ADMIITSIVIPPNCIRPAVIAAGEGTNQDDLTVRLVDSVHFNDEIRKSIEVGRQASSTME 282 Query: 295 EKRMLQEAVDALLDNGR-RGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRS 353 LQ+ V++ +++ A T +P+ + +KGKQGRFR NL GKRV+YSGR+ Sbjct: 283 LWSSLQQNVNSSINSEAADTAAKTKKKNKPVIGVIQRLKGKQGRFRTNLSGKRVNYSGRT 342 Query: 354 VITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVW---- 409 VI+ P + + Q +P MA L P K + L +K ++ Sbjct: 343 VISPDPNVNVDQVVIPVSMAKILTFPTRVTKFNKKDLMRYVKNGPDKYPGANNIIKADTG 402 Query: 410 ---------------------DILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQ 448 + ++ VL NR P+LHR+ I F ++E ++ Sbjct: 403 FKLSLAYGNKEQRAQELREGDIVERHLLDNDTVLFNRQPSLHRISIMGFRAKVMEWCTMR 462 Query: 449 LHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVL 508 + VCA +NADFDGD+M VH+P TLEA +AR LM N+ SP GE I+ P+QD + Sbjct: 463 FNESVCAPFNADFDGDEMNVHLPQTLEAAADARYLMNVLYNLFSPRAGEMIVAPTQDFLS 522 Query: 509 GLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTS 568 G + +TR V + + L A VK K ++A Sbjct: 523 GAFILTRKNVFLDYSHFTFLISQIFDNLEEVD-IPPPAIVKPYQLWTGKQVVSLMIAPNK 581 Query: 569 LKDTTVGRAILW-------MIVPKGLPYSIVN---------QALGKKAISKMLNTCYRIL 612 D + + K S ++ ++L + R Sbjct: 582 KTDLHFTHQVGNKEYTGNKEMCKKDGYVSFLDNYMVSGVLEKSLIGGGPKSLWAIMARDH 641 Query: 613 GLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPE----KKHEIISEAEAEVAEIQEQF 668 K + +I Y G S+GI D+ E K+ IS+ + + ++ Sbjct: 642 SPKFAAVCMQRIAKMSCRYLMNRGFSIGIMDVRPDENLTNNKNAQISKTYQDCYDKIAEY 701 Query: 669 QSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADS 728 SG + A K+ + A N ++S+ + N+ +MA S Sbjct: 702 DSGKLEAAPGMTKLATLEAFLNGQLSELRNK--------IGKMCMAELSPINTPLVMAKS 753 Query: 729 GARGSAAQIRQLAGMRGLMAKPDGSIIE--------------------TPITANFREGLN 768 GA+GS I Q+ G + II+ I ++F GL Sbjct: 754 GAKGSDINICQMMACLGQQSVGGKRIIDDFIDRSIPHFKHGSKDPISKGFIASSFYTGLT 813 Query: 769 VLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEG 828 +F T G R+GL D A+KTA +GY+ RRL+ +DLV+ D + G Sbjct: 814 PSDFFFHTMGGREGLVDAAVKTAQTGYMQRRLMKSLEDLVIAYDQTVRMSDGTIVQFTYG 873 Query: 829 GDVKEPLR--------------DRVLGRVTAE-----------------DVLKPGTADIL 857 D +PL L + + E D+ + L Sbjct: 874 DDGLDPLNLETTYFPVDLNRVSQEYLFKFSQEPLMDQIEARERIETLFNDIREEQQGRGL 933 Query: 858 VPRNTLLHEQWCDLLEENSVDAVK---------------VRSVVSCDTDFGVCAHCYGRD 902 V L ++ +++ +K +R+ + F + Sbjct: 934 VRVPEFLIDRLKKYIDDLLEKYIKANDQYIGEDLSMDSYIRATIPFTKSFLEEFVKFCMH 993 Query: 903 LARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSN 962 + G +G +A QSIGEP TQ+T+R+FH G AS + Sbjct: 994 RCEKSMAEPGMTVGAVAGQSIGEPATQMTLRSFHFAGVASMNVTLGVPR----------- 1042 Query: 963 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDP 1022 ++ V+N+ ++ L R + + ++ G + G+ Sbjct: 1043 IEEVMNAVSEIKTPIITANLL----SQRDEIAARIVKGIIDRVTLGQVCK---------- 1088 Query: 1023 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD 1082 + + I + D Sbjct: 1089 -----------HIEYNQNEKSCYIDIELD------------------------------A 1107 Query: 1083 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA 1142 + + T + + + ++D ++GD R+ + K + Sbjct: 1108 EIIREAKLNITSETVRRSIVNTPKIGVKDENTANNGDYNVRVFMQGANPK----AFSFIM 1163 Query: 1143 DLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE 1202 + P +++ + G+ + ++ + L V Sbjct: 1164 QQLMLKLPD--VVVSGVPGVERVHVGKENG------------CFKLFVEGNPFLKVLNTP 1209 Query: 1203 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR 1262 ++ + D+ ++ GV A I++E+ +V + + I+ +H+ ++ M Sbjct: 1210 GIDPKRTV---SNHVLDVEKVLGVEAARSVIISEITNVMKNYSLNIDRRHLMLLSDLMTI 1266 Query: 1263 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESF--I 1320 + + LG+T+ LA S + Sbjct: 1267 RGKV----------------------------------------LGVTRHGLAKTSVSSL 1286 Query: 1321 SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGY-AYHQDRMRRRAAGEAP 1379 ASF+ T L AA + G+ +VI+G P G+G + P Sbjct: 1287 KLASFETTQEHLFNAAFHNVDEVANGVSASVILGNFAPIGSGMIDVLVSDELLKRTSLTP 1346 Query: 1380 AAPQVTAEDASASLAELLNAGLG 1402 + L G Sbjct: 1347 RCHLIEDYINPMFLTAPYATNDG 1369 >UniRef50_Q9AXN0 DNA-directed RNA polymerase n=4 Tax=Rhodophyta RepID=Q9AXN0_9RHOD Length = 1746 Score = 765 bits (1975), Expect = 0.0, Method: Composition-based stats. Identities = 245/1383 (17%), Positives = 489/1383 (35%), Gaps = 198/1383 (14%) Query: 1 MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60 M + FL + + ++ A++ + SPD IR S E+K KP+ +GL R Sbjct: 1 MSFVKDFLYSSAEVKKVKAVQFGVLSPDEIRRMSVCEIKFETAF--EMGKPKTEGLMDPR 58 Query: 61 IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120 + +D C+ C + GHIEL P +I F Sbjct: 59 LGAIGRDLP---------------CKTCHCDEKNCP---GHFGHIELVKPMFNIGFFGMT 100 Query: 121 PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTN--LERQQILTEEQYLDALEE---FGDE 175 + + +F S ++I+ E +++L + ++ L++ + Sbjct: 101 LRVLRCVC-----------FFCSKLLIDPRDPKADFEVKKVLRIKNRINRLKKVQNLCSK 149 Query: 176 FDAKMGA--EAIQALLKSMDLEQECE-------QLREELNETNSETKRKKLTKRIKLLEA 226 E + + + E + + ++ ++ + K ++ + Sbjct: 150 VKICKHCSNEQPKFAKEGLQFRAEFKGSADDTMEKKQIVSAEKVLSIFKHISDDDIEIMG 209 Query: 227 FVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLA 286 ++PEW ILT+ PV PP +RP V +D DL ++ NN L+ + Sbjct: 210 LSPQHSRPEWFILTLFPVPPPHIRPSVMMDASMRGEDDLTYKLGDIVRNNNALREMERTG 269 Query: 287 APDIIVRNEKRMLQEAVDALLDNGRRGRA-ITGSNKRPLKSLADMIKGKQGRFRQNLLGK 345 AP + + +LQ + +++N G + RP+KS++ +KGK+GR R NL+GK Sbjct: 270 APAHRLNEQIHVLQAHIITIMNNDLPGMPRAHQKSGRPIKSISQRLKGKEGRVRGNLMGK 329 Query: 346 RVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAA------KK 399 RVD+SGR+VI+ P LRL Q G+P+ +A+ L P + + + + K Sbjct: 330 RVDFSGRTVISPDPNLRLDQVGVPQTIAMNLTYPEVVTPFNVEKMRRLVMNGPNEYPGAK 389 Query: 400 MVEREEAVV-----------------WDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLI 442 +ER + ++ ++ V+ NR P+LH++ I ++ Sbjct: 390 YIERLDGSKVNLAFVKNRSDIHLNNGEKVIRHLLDGDYVIFNRQPSLHKMSIMGHRVKVM 449 Query: 443 EGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVP 502 + +L+ + YNADFDGD+M +HVP + +A+ E LMM I+SP +P++ Sbjct: 450 RYSSFRLNLSCTSPYNADFDGDEMNLHVPQSPQARAEVMQLMMVPRCIVSPQGNKPVMGI 509 Query: 503 SQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGE 562 QD ++G T+ + + ++ G+ A +K R K Sbjct: 510 VQDTLVGTMLFTQRDTFMEKDLVMNLLLHFRG---WDGVIPPPAILKPRQLWTGKQLFSM 566 Query: 563 LVAKTSLKDTTVGRAI---------LWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILG 613 ++ +L + +I L V++ A + +++ ++ G Sbjct: 567 ILPDVNLVRFSNTHDDDDIENAGDTKVLISRGELLSGTVDKRTVGSAANSLVHVTWKEHG 626 Query: 614 LKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKH----EIISEAEAEVAEIQEQFQ 669 + I + + G S+GI D + E+ EII++A+ EV + + Q Sbjct: 627 PEGACDLISNIQTLVNHWLLQRGFSIGIGDTIADEQTRFNVIEIINKAKEEVKRLVRKAQ 686 Query: 670 SGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSG 729 G + + + L + ++ + N+I M ++G Sbjct: 687 EGELQLLPG--------KTMMESFETGVNKVLNGARDKSGSDAQKSLLKTNNIKRMVNAG 738 Query: 730 ARGSAAQIRQLAGMRGLMAKPDGSI--------------------IETPITANFREGLNV 769 ++GS I Q+ G I + ++ GL Sbjct: 739 SKGSFINISQICACVGQQNVEGKRISYGFRRRTLPHFVLDDLGPESRGFVENSYLRGLTA 798 Query: 770 LQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGG 829 ++F G R+GL DTA+KT+ +GY+ RRL+ +D++V D + ++ + G Sbjct: 799 TEFFFHAMGGREGLIDTAVKTSETGYIQRRLIKALEDVMVKYDGTVRNSTGLIVQFLYGE 858 Query: 830 DVKE--PLRDRVLGRVTAEDVLKPGTAD-ILVPRNTLLHEQWCDLLEENSVDAVKVRSVV 886 D + + D+ L ++ D T + + E L + +D V+ + Sbjct: 859 DGMDGAMVEDQNLRTLSMNDAKLEQTFHLDPFDLDFGIGENRRSYLAQEVIDDVRNDPQL 918 Query: 887 SCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAA 946 + RD + II E+ +A +I +L + + + Sbjct: 919 IKALEDEFAQIKLDRDRLQREIIRSRESKWPLAV-NID----RLIWNVKTLFNIRQDSVS 973 Query: 947 ESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKG 1006 + + + KG ++ SR + L P ++ Sbjct: 974 DLNPRDILKGVQ---------------ILLSRCNVVAL-------------PPKSIKLLD 1005 Query: 1007 DGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAE 1066 +G+ G+ VA D +++ V T + +I + + + + + Sbjct: 1006 EGD----GDQVAEVDTNSVSRQLAVEAQENATLL---WSIHIRAFLASKVI---LKEYRL 1055 Query: 1067 RTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISS---GDTLAR 1123 L ++ P ++ I TL Sbjct: 1056 DKKAFMHLLGEIENRFLHAKC--------------PPGEMIGAVAPQSIGEPATQMTLNT 1101 Query: 1124 IPQESGGTKDITGGLPRVADLFE-ARRPKEPAILAEISGIV-----SFGKETKGKRRLVI 1177 K++T G+PR+ ++ A+ K P++ + G + + + Sbjct: 1102 FHFAGVSAKNVTLGVPRLKEIINVAKHCKTPSLTVYLRGEAARDAERAKQVQAELQHTTL 1161 Query: 1178 TPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEV 1237 V S + + E V + D + ++ + + E+ Sbjct: 1162 NHVTQSTEIYYDPNPQDTVIEADQELVRSYYELPDDENSSANLSPWL----LRLNLSKEM 1217 Query: 1238 QDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGK 1297 D+ + + + K G + + E + + V + + Sbjct: 1218 MT----------DRKLSM--NHVKNKIHHDLGGDVNVMASEDNDANLVLRIRIAAQKEPE 1265 Query: 1298 VGA 1300 A Sbjct: 1266 KMA 1268 Score = 202 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 87/511 (17%), Positives = 170/511 (33%), Gaps = 82/511 (16%) Query: 902 DLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLS 961 + GE IG +A QSIGEP TQ+T+ TFH G +++ + Sbjct: 1069 NRFLHAKCPPGEMIGAVAPQSIGEPATQMTLNTFHFAGVSAKNVTLGVPR---------- 1118 Query: 962 NVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWD 1021 +K ++N + S L+ E R E K + E + + Sbjct: 1119 -LKEIINVAKHCKTPSLTVYLR--GEAARDAERAKQVQAELQHTTLNHVTQSTEIYYDPN 1175 Query: 1022 PHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIV 1081 P + + + ++ D + + L + KI Sbjct: 1176 PQDTVIEADQELVRSYYELPDDENSSANLSPWLLR--LNLSKEMMTDRKLSMNHVKNKIH 1233 Query: 1082 DAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRV 1141 G DV + ++ + I ++ +++ G+ A+ +E Sbjct: 1234 HDLGGDVNVMASEDNDANLVLRIRIAAQKEPEKMAEGEEHAQEEEEDE------------ 1281 Query: 1142 ADLFEARRPKEPAILAEIS-GIVSFGKETKGKRRLVITPV---DGSDPYEEMIPKWRQLN 1197 LF R E ++L+E++ G V K+ + I P G +E + N Sbjct: 1282 -CLF--LRKVEGSLLSEMNLGGVPDIKKVYMREADRIVPDPRTGGLSVEKEWVLDTDGTN 1338 Query: 1198 VFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIV 1257 + + D ++ G+ V ++NE++ V G +N +H+ ++ Sbjct: 1339 LLAVMSHKDVDYTRTVSNDVVEMFVTLGIEGVRAALLNEIRGVISFDGAYVNYRHLAILA 1398 Query: 1258 RQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLAT- 1316 M ++ IT+ + Sbjct: 1399 DIMT----------------------------------------CRGHIMSITRHGINRV 1418 Query: 1317 -ESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYH---QDRMRR 1372 + SF+ET +L EAA+ G+ D+++G+ EN+++G++ P GTG + ++ Sbjct: 1419 ETGALMRCSFEETADILLEAAMYGEVDDMKGVAENIMLGQMAPVGTGEFGLLLNEKALKN 1478 Query: 1373 RAAGEAPAAPQ---VTAEDASASLAELLNAG 1400 E A + + +AG Sbjct: 1479 LITAEEDARTPRAGLMSPAHGFDTPRAFDAG 1509 >UniRef50_Q2W2I2 DNA-directed RNA polymerase subunit beta' n=10 Tax=Bacteria RepID=RPOC_MAGSA Length = 1496 Score = 762 bits (1968), Expect = 0.0, Method: Composition-based stats. Identities = 432/878 (49%), Positives = 588/878 (66%), Gaps = 27/878 (3%) Query: 526 VLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPK 585 V E E +LH +++ R + E T + DTT GR +L +I+PK Sbjct: 631 VFVNMAEIEEALTEKTITLHTKIRARFDTV----DSEGTPVTQIVDTTPGRMMLSVILPK 686 Query: 586 GLPYSI--VNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDD 643 +N+ L KK I +++ YR G K TVIFAD++M G++ A ++G S G DD Sbjct: 687 NKNVPFSLINRLLTKKEIQNVIDVVYRHCGQKETVIFADRVMGLGYSNAFKAGISFGKDD 746 Query: 644 MVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQT 703 +VIP +K ++ E E + E ++Q+Q GL+T GE+YNKV+D W+ D V+ AMM + + Sbjct: 747 LVIPPEKETLVGETEEKAKEYEQQYQDGLITQGEKYNKVVDAWSKCTDDVADAMMKQISS 806 Query: 704 ETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANF 763 + NSIYMMA SGARGSAAQ++QLAGMRGLMAKP G IIETPI +NF Sbjct: 807 LVPGKQI---------NSIYMMAHSGARGSAAQMKQLAGMRGLMAKPSGEIIETPIISNF 857 Query: 764 REGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMT 823 +EGL VL+YF STHGARKGLADTALKTANSGYLTRRLVDVAQD ++ E+DCGT G+ ++ Sbjct: 858 KEGLTVLEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDAIICEEDCGTTNGLTVS 917 Query: 824 PVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVR 883 PVIEGG+V L +R+LGR A D++ P T +++V ++ E +L++ ++ V +R Sbjct: 918 PVIEGGEVIASLAERILGRSAARDIVNPLTGEVIVKAAQMIQETEVELIDAAGIETVVIR 977 Query: 884 SVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASR 943 SV++CD++ GVC CYGRDLARG +N GEA+GVIAAQSIGEPGTQLTMRTFHIGGAA R Sbjct: 978 SVLTCDSEEGVCGSCYGRDLARGTRVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQR 1037 Query: 944 AAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVL 1003 A +SSI+ G++++ N VVNSSG ++ SRN E+ L+D R + ++VPYGA L Sbjct: 1038 GAEQSSIEATFDGTVQVINRNVVVNSSGASIVMSRNCEVALLDINNRERARHRVPYGAKL 1097 Query: 1004 AKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLD 1063 + ++V G +A WDP+T+P+ITE +G + D+ +G ++ DE TG++S VV+D Sbjct: 1098 LVDEAQKVTKGTKLAEWDPYTLPIITERAGVAHYVDLTEGLSMREVVDEATGIASKVVVD 1157 Query: 1064 SAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLAR 1123 ++ G LRP + + D +G ++L+ + A+YF+ AI+ +E+ ++++GD LAR Sbjct: 1158 WKQQPRGAD-LRPRVTLRDEKGEELLLA-NGLEARYFMSVDAILSVENNTKVNAGDVLAR 1215 Query: 1124 IPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGS 1183 IP+ES T+DITGGLPRVA+LFEAR+PK+ AI+++ G V FGK+ K KRR+++ P +G Sbjct: 1216 IPRESSKTRDITGGLPRVAELFEARKPKDHAIISDCDGRVEFGKDYKSKRRILVVPEEG- 1274 Query: 1184 DPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRL 1243 D E +IPK + ++V EG+ V RGD + DG PHDIL++ GV A+ +Y++NE+Q+VYRL Sbjct: 1275 DAIEYLIPKGKHISVQEGDYVRRGDPLMDGNPVPHDILKVLGVEALAQYLINEIQEVYRL 1334 Query: 1244 QGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYS 1303 QGVKINDKHIEVIVRQML+K I + G + L GEQV+ I N + A+ + Sbjct: 1335 QGVKINDKHIEVIVRQMLQKVEITDPGDTTLLVGEQVDRVEFDIENSKAIREQGRPASGT 1394 Query: 1304 RDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGY 1363 L GITKASL T SFISAASFQETTRVLTEAAV+GK D L+GLKENVIVGRLIPAGTG Sbjct: 1395 PVLQGITKASLQTHSFISAASFQETTRVLTEAAVSGKVDSLQGLKENVIVGRLIPAGTGA 1454 Query: 1364 AYHQDR---------MRRRAAGEAPAAPQVTAEDASAS 1392 ++ R M+ E PA P V A + Sbjct: 1455 VMNRLRAIAAKRDKDMQVEGESEVPAIPPVAEGSAPEA 1492 Score = 670 bits (1728), Expect = 0.0, Method: Composition-based stats. Identities = 416/579 (71%), Positives = 486/579 (83%), Gaps = 1/579 (0%) Query: 1 MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60 M +L+K + T+ FD I+I++ASP+ IRSWS+GE+KKPETINYRTFKPERDGLFCAR Sbjct: 1 MNELMKIFGQVSGTQSFDQIRISIASPERIRSWSYGEIKKPETINYRTFKPERDGLFCAR 60 Query: 61 IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120 IFGP+KDYECLCGKYKR+K+RG+ICEKCGVEVT KVRRERMGHIELASP AHIWFLKSL Sbjct: 61 IFGPIKDYECLCGKYKRMKYRGIICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL 120 Query: 121 PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFG-DEFDAK 179 PSRIGLL DM L+D+ER+LYFE+YVV+E G+T L+ +++LTEEQY+ A++E+G D F AK Sbjct: 121 PSRIGLLCDMTLKDLERILYFENYVVVEPGLTPLKIRELLTEEQYMRAVDEYGEDAFTAK 180 Query: 180 MGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMIL 239 +GAEAI+ +L +DLE E QL+ +L ET SE KRKKL KR+KL+EAF++SG++PEWMIL Sbjct: 181 IGAEAIRDMLTVIDLETEKAQLKVDLKETTSEAKRKKLVKRMKLVEAFMESGSRPEWMIL 240 Query: 240 TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRML 299 V+PV+PP+LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL++L AP+IIVRNEKRML Sbjct: 241 EVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPEIIVRNEKRML 300 Query: 300 QEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP 359 QEAVDAL DNGRRGRAITG+NKRPLKSL+DM+KGKQGRFRQNLLGKRVDYSGRSVI VGP Sbjct: 301 QEAVDALFDNGRRGRAITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP 360 Query: 360 YLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREH 419 L+LHQCGLPKKMALELFKPF+Y KLEL G+ATTIKAAK+MVE+E VWDIL+EVIREH Sbjct: 361 ELKLHQCGLPKKMALELFKPFVYSKLELYGMATTIKAAKRMVEKERPEVWDILEEVIREH 420 Query: 420 PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLE 479 PV+LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVC A+NADFDGDQMAVHVPL+LEAQLE Sbjct: 421 PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE 480 Query: 480 ARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRS 539 AR LMMSTNNILSPANG+PIIVPSQD+VLG+YY+T + G+ + + E + + Sbjct: 481 ARVLMMSTNNILSPANGKPIIVPSQDIVLGIYYITMERDEVPGQVLKIRSMDELKGAIAN 540 Query: 540 GLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAI 578 + KD + L S T R Sbjct: 541 NAILFYCPTDPNTKIDTKDLDTLLDRLASRNVTAHRRVN 579 >UniRef50_C4VAM1 DNA-directed RNA polymerase n=1 Tax=Nosema ceranae BRL01 RepID=C4VAM1_NOSCE Length = 1612 Score = 762 bits (1967), Expect = 0.0, Method: Composition-based stats. Identities = 262/1473 (17%), Positives = 505/1473 (34%), Gaps = 212/1473 (14%) Query: 9 KAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDY 68 + + +I+ L SP+ IR S +V PET+ P+ GL ++ + + Sbjct: 2 FDEIVKKRITSIQFGLFSPEEIRKASVVQVIHPETM--ENGFPKPGGLIDLKMGTTERAF 59 Query: 69 ECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLL 128 +C C + GHIEL P H+ ++ + Sbjct: 60 ---------------LCSSCEKDNFSCP---GHFGHIELTKPMFHVGYMSKI-------- 93 Query: 129 DMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQAL 188 + +E V Y+ S + I+ + + + E E G Q + Sbjct: 94 ---KKILECVCYYCSKIKIDKKHLKKDLNFVWNSCKTKSVCEGELTEA-GFSGCGNKQPV 149 Query: 189 LKSMDLEQECEQLREE-------LNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTV 241 +K + EE LN KK++ F +KP+W+++TV Sbjct: 150 IKKEGMGLVAFMKGEEDSDGKVILNGERVHNILKKISDEDSTYLGFDTKYSKPDWLVITV 209 Query: 242 LPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQE 301 L V PP +RP + ++G A DL ++ N LK+ AP ++R+ +++LQ Sbjct: 210 LLVPPPSVRPSIVMEGMLRAEDDLTHKLADIVKANTYLKKYELEGAPGHVIRDYEQLLQF 269 Query: 302 AVDALLDNGRRGRAIT-GSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360 + ++DN G+ + RP+KS++ +KGK+GR R NL+GKRVD+S RSVIT Sbjct: 270 HIATMIDNDLSGQPQALQKSGRPIKSISARLKGKEGRVRGNLMGKRVDFSARSVITPDAN 329 Query: 361 LRLHQCGLPKKMALELFKPFIYGKLELRGLATTI------KAAKKMVEREEAVVWD---- 410 + L + G+P ++A P + L + V R + D Sbjct: 330 ISLEEVGVPLEIAKIHTFPETITPYNIERLTRLVSNGPNEYPGANYVIRSDGQRIDLNFN 389 Query: 411 -----------ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNA 459 + + VL NR P+LH++ + ++EGK +L+ + YNA Sbjct: 390 RGDIKLEEGYIVERHMQNGDVVLFNRQPSLHKMSMMGHFVRVMEGKTFRLNLSCTSPYNA 449 Query: 460 DFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-RDCV 518 DFDGD+M +H+P + + E L + + +LSP + P++ QD + L T RD Sbjct: 450 DFDGDEMNLHMPQSYNTKAELEELCLVSKQVLSPQSNRPVMGIVQDSLTSLRLFTLRDTF 509 Query: 519 NAKGEGMVLTGPKEAERLYRSGLASLHARVK------VRITEYEKDANGELVAKTSLKDT 572 K E M L + +H I+ +K G+ + L + Sbjct: 510 FDKRETMQLLYSINLSKYENFNNEDMHKTSIMDLLNYPTISYPKKLWTGKQIFSYILPNI 569 Query: 573 TVG--------------RAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTV 618 + + +I L I+++ +++ K Sbjct: 570 VYSAVSNEHDENDLENLKDTVVIIRNGELLSGIIDKKSVGTTQGGLIHIIANDFSHKRIT 629 Query: 619 IFADQIMYTGFAYAA-RSGASVGIDDMVIPEKKH----EIISEAEAEVAEIQEQFQSGLV 673 F D + + S+GI D + ++ I A+ +V ++ E+ Q + Sbjct: 630 SFFDDTQKIMNKFITFINAFSIGIGDAIANKETMVQVQSSIENAKYQVEKLIERAQRNKL 689 Query: 674 TAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGS 733 + + N L I+ + N++ M +G++GS Sbjct: 690 ERLPGMSMKESFESQVNYI--------LNKPRDISGTSASKSLNFCNNMRTMVLAGSKGS 741 Query: 734 AAQIRQLAGMRGLMAKPDGSI--------------------IETPITANFREGLNVLQYF 773 I Q+ G I + ++ +GL +++ Sbjct: 742 FINISQVTACLGQQNVEGKRIPFGFNYRSLPHFSKGDYSGKSRGFVENSYVKGLAPEEFY 801 Query: 774 ISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKE 833 G R+GL DTA+KTA +GY+ RRLV +D V D + G D + Sbjct: 802 FHAMGGREGLIDTAIKTAETGYIQRRLVKAMEDATVGLDRSVRGANGFIYQYEYGEDGFD 861 Query: 834 PLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWC-DLLEENSVDAVKVRSVVSCD--- 889 + ++ + D+ N + ++ + + + V ++++ V+ + Sbjct: 862 ATYLE-MQKIKLTNFKDLHFVDMFADENYAIKKENVTEQIYKLLVTDLELQKVLYDEYDW 920 Query: 890 --------TDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAA 941 + + + C + + I G ++ I +L+ F+ Sbjct: 921 LYKNALKYENQNIASPCNFKRIIDTAIFKFNCEKGDVSPYYILSSLQKLSESLFNRNLLL 980 Query: 942 S--RAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLI-------------D 986 S ++ N+ + L K +++ + V S +++ Sbjct: 981 KLLVKINLSVKRILNEYKLSLEAFKWIIDEIKRKVNKSIIAPSEMVGTLAAQSVGEPATQ 1040 Query: 987 EFGRTKESYKVPYGAVLAK---GDGEQVAGGET-------VANWDPHTMPVITEVSGFVR 1036 T V + + VA + T+ + ++ G + Sbjct: 1041 MTLNTFHLAGVSANITMGVPRLKEIINVAKNIKTPCMKIYLQEPYNKTLEMAKKIQGDIE 1100 Query: 1037 FTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPAL-KIVDAQGNDVLIPGTDM 1095 ++D+ + + +L+ D + L + + +I Sbjct: 1101 YSDIKSICEFSEIFYDPVVEDTLIEEDKDFVKSYFDFPDENLDFLQMPKYIIRIIVDRSK 1160 Query: 1096 PAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAI 1155 L ++ ++ ++ F P++ I Sbjct: 1161 LVSRGLKMDDLIACVHKAFPKKFHIISSDENAR-----------KLIIRFRCITPEDNNI 1209 Query: 1156 ---LAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISD 1212 + +++ K + V D + L G +++ Sbjct: 1210 DIYNVYYNKVINLKITGYNKIKKVYITEDKEQKNWFLQTDGVCLREIMSHPDICGHLVT- 1268 Query: 1213 GPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSS 1272 ++I+ + G+ A I+ E+ V G +N +HI ++ M K Sbjct: 1269 -SNDINEIVEVLGIEAARETILQELTLVIDGNGSYVNHRHISLLADVMTMK--------- 1318 Query: 1273 DFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESF--ISAASFQETTR 1330 L GIT+ + F + ASF+ET Sbjct: 1319 -------------------------------GYLTGITRHGVNKVGFGALKRASFEETVD 1347 Query: 1331 VLTEAAVAGKRDELRGLKENVIVGRLIPAGTGY 1363 +L +AA A + + +G+ EN+++G+L P GTG Sbjct: 1348 ILLDAAYAAENNVTKGITENIMMGQLAPLGTGI 1380 >UniRef50_B1L934 DNA-directed RNA polymerase subunit beta' n=8 Tax=Bacteria RepID=RPOC_THESQ Length = 1690 Score = 760 bits (1963), Expect = 0.0, Method: Composition-based stats. Identities = 435/1301 (33%), Positives = 652/1301 (50%), Gaps = 145/1301 (11%) Query: 150 GMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETN 209 T L+ I+TE +Y L+ + ++ A GA+AI+ LL+++DLE ++ EL + Sbjct: 433 KETGLKVGDIVTENEYEAYLQIYPEKIVADAGAQAIKKLLQNLDLEALQAEIEAELKKLP 492 Query: 210 SET-KRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDL 268 S + K KL +R+K+++ F++SGNKPEWM+L V+PV+PPDLRP++ ++GGRFAT+DLN+L Sbjct: 493 SSSSKAIKLRRRLKMVKDFLKSGNKPEWMVLEVVPVIPPDLRPMIQIEGGRFATTDLNEL 552 Query: 269 YRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAIT-------GSNK 321 YRR+INRNNRLK+LL+L AP+II+RNEKRMLQEAVDAL+ NG N Sbjct: 553 YRRLINRNNRLKKLLELGAPEIILRNEKRMLQEAVDALIHNGSDSEGKRSRRAVLKDRNG 612 Query: 322 RPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFI 381 RPLKSL D++KGK+GRFR+NLLGKRVDYSGR+VI VGP L++HQCG+PKKMA+ELFKPF+ Sbjct: 613 RPLKSLTDLLKGKKGRFRRNLLGKRVDYSGRAVIVVGPNLKIHQCGIPKKMAMELFKPFV 672 Query: 382 YGKLELRGL--ATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEP 439 KL G T K K ++E+E W++L+EVI+ VLLNRAPTLHR+ IQAFEP Sbjct: 673 LAKLLGEGSSSKTMRKVKKAIIEKEMPEAWEVLEEVIKGSVVLLNRAPTLHRMSIQAFEP 732 Query: 440 VLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPI 499 L+EG AIQLHP+VC +NADFDGDQMAVHVPL+ AQ EAR LM+S NI+SPA+G+PI Sbjct: 733 KLVEGNAIQLHPVVCPPFNADFDGDQMAVHVPLSAAAQAEARFLMLSRYNIISPAHGKPI 792 Query: 500 IVPSQDVVLGLYYMT-----RDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITE 554 +P+QD+++G YY+T D + + + P+EA Y G LH + +++ Sbjct: 793 SLPTQDIIIGSYYLTTVGKEFDSLKEEDVKWKFSSPEEAMLAYHLGFIKLHTPILIKVVI 852 Query: 555 YEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGL 614 ++ + TT+GR I I+P+ L N+ KK I+ ++ ++ G+ Sbjct: 853 NGEEKRIK---------TTLGRVIFNGILPEDLR--DYNRIFDKKQINALVYETFKRHGI 901 Query: 615 KPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVT 674 D I GF YA SG ++ + D+ IP ++ EI+ + +V I+E ++ G +T Sbjct: 902 DRAADLLDDIKDIGFHYATVSGLTLSLKDLKIPPERDEILRKTWEKVRIIEENYEKGFLT 961 Query: 675 AGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSA 734 +R +++I +W + + ++K L + FN IYMM +SGARG+ Sbjct: 962 EEQRKSEIIRLWMSVTEEITKLTSKTLAED-------------PFNPIYMMVNSGARGNI 1008 Query: 735 AQIRQLAGMRGL-------------------MAKPDGSIIETPITANFREGLNVLQYFIS 775 Q++QLAG+RGL A + + P+ N REG+++LQ+FIS Sbjct: 1009 DQVKQLAGIRGLMIKAYDPRSREIKSKIFKGQAIHEALTFDYPVDKNLREGVDILQFFIS 1068 Query: 776 THGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPL 835 T+GARKG DTA+ T+ +GYLTRRLVDVAQ + V+E DCGTHEGI +I+ G V E + Sbjct: 1069 TYGARKGQVDTAMNTSFAGYLTRRLVDVAQSVTVSEPDCGTHEGIRAMDLIKEGTVVEKM 1128 Query: 836 RDRVLGRVTAEDVLKPGTADIL--------VPRNTLLHEQWCDLLEENSVDAVKVRSVVS 887 + + GRV A DVL P T ++L RNT+L + + L VR Sbjct: 1129 NEFLFGRVLARDVLDPETKEVLKNPETGKEYTRNTMLTDDDANFLASYKKMVDVVRYEEI 1188 Query: 888 CDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIG--------- 938 T+ + E +G E GT+LT Sbjct: 1189 DITELSLPNMY----------AEIAEPVGE------YEEGTELTWDVVKAAKNEGKYRIK 1232 Query: 939 ----GAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTEL------KLIDEF 988 AE KG +L + V+N ++ E ++ Sbjct: 1233 VKVYPVVGTVYAEEEPLYDKKGERQLLVYQEVINEIVAKMLEENGIEKVPVRPDIIVRSP 1292 Query: 989 GRTKESYKVPYG---------AVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTD 1039 + Y V ++ G+ + +++ V G + +D Sbjct: 1293 LTCESEYGVCAACYGMDLSNHKIVNVGEAVGIVAAQSIGEPGTQLTMRTFHVGGVMGASD 1352 Query: 1040 MIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQY 1099 ++ G T +T E + L VD D+ + Y Sbjct: 1353 IVSGLTTVEKTFEPYAFLREEKSGGKKEIRKYYGSEAILCEVDGFVKDIATDESGRTVIY 1412 Query: 1100 F-----------LPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEAR 1148 +P +A V++E G ++ G+TL ++ + + + Sbjct: 1413 IEDYAGNIHAYKVPKRAKVRVEKGQKVLRGETLTSGAIVWWKLLELESEKGVMTAMNLLK 1472 Query: 1149 RPKEPAI---LAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVE 1205 K + ++ + ++ P D ++++P + Sbjct: 1473 IIKNAYVQQGVSIHDKHFEIIFKQMLSMATIVDPGDSDYLPDQLVPLV--------DIKR 1524 Query: 1206 RGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKAT 1265 I +G + + + + I+ E ++ + V++ K EV + Sbjct: 1525 FNREILEGNAKVEENRKWVIGKTLAKRIIAETEE---GELVELAQKGDEVTEELLK---K 1578 Query: 1266 IVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASF 1325 I+ AG + ++ + K Y R LL + KA+L ++SAA+F Sbjct: 1579 IIEAGIKE------IDVFEKDKVV-TYQILPKEPIKYKRRLLSLKKAALNYPGWLSAAAF 1631 Query: 1326 QETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYH 1366 +ET VLT AA+ GK D L GLKENVIVG+LIPAGTG Sbjct: 1632 EETAWVLTAAAIEGKVDPLIGLKENVIVGQLIPAGTGLDVF 1672 Score = 180 bits (455), Expect = 5e-43, Method: Composition-based stats. Identities = 93/219 (42%), Positives = 135/219 (61%), Gaps = 8/219 (3%) Query: 15 EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74 + AI+I +ASP++IRSWS GEVKKPETINYRTFKPERDGLFC RIFGPVKDYEC CGK Sbjct: 8 RKIKAIQIKIASPEVIRSWSGGEVKKPETINYRTFKPERDGLFCERIFGPVKDYECACGK 67 Query: 75 YKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRD 134 YK K+ G +CE+CGV V + RR+RMGHIELA+P HIW+L+S+PS +G LL+M D Sbjct: 68 YKGKKYEGTVCERCGVRVESREARRKRMGHIELAAPAVHIWYLESIPSVLGTLLNMSTSD 127 Query: 135 IERVLYFES-------YVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQ- 186 +E ++Y+ S ++V + T + ++ E +Y +++ + + + + Sbjct: 128 LENIIYYGSRRVIERVFIVTDPKDTPFSQGDVIYETEYRIYRKKWDFDVEQAFVVKNPKS 187 Query: 187 ALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLE 225 +L +D E + + + K +T+ + Sbjct: 188 PVLSDIDGEVTLKTEKSITGREITWIIVKNITRATHTVL 226 Score = 52.6 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 40/273 (14%), Positives = 86/273 (31%), Gaps = 60/273 (21%) Query: 953 KNKGSIKLSNVKSVVNSSGKLVITSRNT----ELKLIDEFGRTKESYKVPYGAVLAKGDG 1008 + +K + + G++ + + + E+ I T+ ++ V G +L DG Sbjct: 177 EQAFVVKNPKSPVLSDIDGEVTLKTEKSITGREITWIIVKNITRATHTVLPGMILVVKDG 236 Query: 1009 EQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERT 1068 ++V G+ + + PV G V ++ + T+ T Sbjct: 237 QEVEKGQDLTK-EMTIDPVYAPFDGHVEIDELSNTITLKPLT------------------ 277 Query: 1069 AGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQES 1128 D P + +P A + + +G ++ GD + Sbjct: 278 ----------------------TSKDQPVVFTVPYGAKILVSNGQKVKKGDQITTSTSLP 315 Query: 1129 GGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEE 1188 I+G + R I A G + VI + + Sbjct: 316 SVKSSISGTV---------RFGSNLNIRALEDGNFEVLSTGEVYVEQVI------EERKY 360 Query: 1189 MIPKWRQLNVFEGERVERGDVISDGPEAPHDIL 1221 + + + V G++V++GD ++D + L Sbjct: 361 PVFEGALVYVNNGDQVKKGDHLADRFLFEEEYL 393 >UniRef50_Q5CUJ2 DNA-directed RNA polymerase (Fragment) n=6 Tax=Eukaryota RepID=Q5CUJ2_CRYPV Length = 1902 Score = 757 bits (1953), Expect = 0.0, Method: Composition-based stats. Identities = 265/1541 (17%), Positives = 508/1541 (32%), Gaps = 215/1541 (13%) Query: 5 LKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGP 64 L + + + +I+ + SP++IR +S E+K + +P+ GL + Sbjct: 14 LNSPFSSKELKRVFSIEFGVLSPELIRKYSVLEIKVSDIY--ENGRPKSGGLNDPLLGTT 71 Query: 65 VKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRI 124 ++CE C +++ HIEL P HI F+ ++ + Sbjct: 72 ---------------DYHILCETCHMDIKTCP---GHFAHIELGKPMFHIGFITTVLKLL 113 Query: 125 GLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEA 184 + + L + + L ++IL D G Sbjct: 114 RCVCYACSKLFVDTLDPKFKQIKRIKNPRLRLKKILEMRSSSSRCIISSD----GSGCGF 169 Query: 185 IQALLKSMDLEQECEQLREE--------------LNETNSETKRKKLTKRIKLLEAFVQS 230 +Q Q ++E L T K+++ + F Sbjct: 170 VQPTYSKEGYNLYINQNQDENRIIDDESVDSKRLLAAEEVLTIFKRISHDDMKILGFDPV 229 Query: 231 GNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDI 290 P W I TV+P+ PP +RP V R + DL +++I N LK+ + + +P+ Sbjct: 230 KCNPSWFINTVIPIPPPAVRPYVQFGSDR-SEDDLTLKLQQIIKLNENLKKQIRIGSPEH 288 Query: 291 IVRNEKRMLQEAVDALLDNGRRGRAI-TGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDY 349 I+ +LQ + L++N G + RP+KSL +KGK GR R NL+GKRVD+ Sbjct: 289 IISEMSTVLQYHLITLINNDLPGLPQSRTRSNRPIKSLRARLKGKDGRIRGNLMGKRVDF 348 Query: 350 SGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI------KAAKKMVER 403 S R+VIT P L + Q G+P +A+ L P + + L + + + Sbjct: 349 SARTVITGDPNLAVDQVGVPYSIAMTLTYPEVVTPYNIEELKELVQRGPHEWPGATSIIQ 408 Query: 404 EEAVV-------------------WDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEG 444 E+ W + + + VL NR P+LH++ I ++ Sbjct: 409 EDGTKVDLRFSNTSNNSNNILQYGWKVERHMKNDDLVLFNRQPSLHKMSIMGHRVKILPY 468 Query: 445 KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQ 504 +L+ V + YNADFDGD+M +H+ + E + E + LMM I+SP +P+I Q Sbjct: 469 STFRLNLSVTSPYNADFDGDEMNLHLAQSHETRSEIKNLMMVPRQIVSPQGNKPVIGIVQ 528 Query: 505 DVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELV 564 D +LG++ +TR + + Y +G A ++ + K L+ Sbjct: 529 DSLLGIFLLTRKSTFLTRDKFLQLLLCIP---YWNGNIPPPAILRPQPLWTGKQIITVLL 585 Query: 565 AKT-------------------------------------SLKDTTVGRAILWMIVPKGL 587 A T + + + +I+ KG Sbjct: 586 AFTTDLGEPIELNLMRDGSIVSIKQSNNSSNTDKDDSKEAIVNNPWISELDNQVIIQKGE 645 Query: 588 P-YSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDM-- 644 ++ + + + +++ + +G + T +F + G +VG D+ Sbjct: 646 HICGVLTKKIAGSSSGSLIHILWNEIGPEKTGLFLTYTQMVVNTWLLEHGFTVGCQDIQP 705 Query: 645 --VIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQ 702 EK + ++ +V +I + Q G + + + A N ++ A Sbjct: 706 QNYTLEKIMNSLEGSKLQVQQIIRRAQKGKLDCQPGKSLIESFEAQVNQELNSAR----- 760 Query: 703 TETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM--------------- 747 + E S N+I M G++GS I Q+ G Sbjct: 761 --ELSGTIATENLDSSKNNIVAMVQCGSKGSTINISQIMACVGQQNVEGKRIPFGFRDRS 818 Query: 748 -----AKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVD 802 G ++ ++ GL + F G R+G+ DTA KT+ +GY+ RRL+ Sbjct: 819 LPHFLKYDYGPESRGFVSNSYLSGLTPQEVFFHAMGGREGIIDTACKTSETGYIQRRLIK 878 Query: 803 VAQDLVVTEDDCGTHEGIMMTPVIEGGDVK--EPLRDRVLGRVTAE----------DVLK 850 +D +V D + + + G D E + D+V+ + E ++ Sbjct: 879 AMEDCMVQYDRTVRNSNGDIIQFLYGEDGMAGEFIEDQVIELLQMEAAVFQHKYRHNLEH 938 Query: 851 PGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARG--HI 908 P L + LE ++ + + +V+ G G +I Sbjct: 939 PRWGSSWAGVQPSLIKNLQFDLESQNILNSEYKQLVTDREQLGKDIFPDGETRQHLPINI 998 Query: 909 INKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAAS------------RAAAESSIQVKNKG 956 + Q + + + +I + + Sbjct: 999 NRIIQMAQQKFPQRVSDTSSSKDWGPVYIIKKVESLLDKLLLWKNVGIINDEGNKSNFVF 1058 Query: 957 SIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLA------KGDGEQ 1010 ++ V+ + + I S K+++ +++ G + GE Sbjct: 1059 DSIIAEVQKNATTLLGIHIRSSLASKKILEVDRLGPTAFEWILGEIEHQFYRSLAHSGEM 1118 Query: 1011 V--AGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERT 1068 V +++ +G + + + + + + E Sbjct: 1119 VGTIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLRELINVAKNVRTPTLTVYLESG 1178 Query: 1069 AGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISS----------- 1117 + + + + T Y + D +S Sbjct: 1179 IANDQEQAKDVLTLLEHTMLQNITTIAHILYDPEQDKTIVEADKSWVSDYYEFPDDADIT 1238 Query: 1118 ---GDTLARIPQESGGTKD-----------ITGGLPRVADLFEARRPKEPAILAEISGIV 1163 G L RI + D I + + + + + + Sbjct: 1239 SRLGTWLLRIQLNNKLVTDKKLSMKEIGDKILMEFSKDE--LDCIWTDDNSDELVLRLRI 1296 Query: 1164 SFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVIS-DGPEAPHDIL- 1221 + T R + + + + + E E I+ G + Sbjct: 1297 KNIEPTNNIRDNIHSSEENDSISPSITSGVEEHKFLEKLMTECLSQITLRGINNIKKVYM 1356 Query: 1222 ---RLRGVHAVTRYIVNEVQDVYRLQGVKI----------NDKHIEVIVRQMLRKATIVN 1268 ++ +V++ +V + Q V G + + + I + ++ I Sbjct: 1357 KEEQVSRYDSVSQKMVRDNQWVLDTDGCNLEAVLCHTAIDSTRTISNDITEVFSVLGIEA 1416 Query: 1269 AGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLAT--ESFISAASFQ 1326 + E V N A T L+ IT+ + + + SF+ Sbjct: 1417 VRRALLRELRTVISFDGSYVNYRHLALLCDNMTQKGHLMSITRHGINRVDKGPLQKCSFE 1476 Query: 1327 ETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQ 1367 ET VL +AA+ G+ D L G+ ENV++G+L P GT Sbjct: 1477 ETVEVLMDAAMFGETDYLNGVSENVMLGQLAPYGTACFDVL 1517 >UniRef50_A9VCM2 DNA-directed RNA polymerase n=3 Tax=Fungi/Metazoa group RepID=A9VCM2_MONBE Length = 1414 Score = 755 bits (1949), Expect = 0.0, Method: Composition-based stats. Identities = 278/1561 (17%), Positives = 495/1561 (31%), Gaps = 357/1561 (22%) Query: 5 LKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETIN-YRTFKPERDGLFCARIFG 63 + + ++ I+ L ++ S V E KP G R+ Sbjct: 3 KQQYRDDQTPKKISHIQFGLMDHYEMQRLSEVRVYSKEFYTGLPDRKPAPFGPLDRRLGA 62 Query: 64 PVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSR 123 + + C C + + GHIEL P H+ F K+ S Sbjct: 63 ---------------FDKSLDCATCSQNLRKC---EGHFGHIELELPVFHVGFFKATLSC 104 Query: 124 IGLLLDMPLRDIERVLYFESYVVI--EGGMTNLERQQILTEEQYLDALEEF-GDEFDAKM 180 + + R + ++ + + R I+ E A Sbjct: 105 LQRICKSCSRVMLSHKQATVFLRRLQDPNLERGPRAAIIKEVGDQCRKNAASCPHCSACN 164 Query: 181 G------------------------AEAIQAL-------LKSMDLEQECEQLREELNETN 209 G EA L +K + + +++++ELN Sbjct: 165 GVVKRPKNSVLRIVHERFTKKNNRLREAHHQLFQEAASEVKDLSASLKADKVQDELNPLR 224 Query: 210 SETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLY 269 + + + + L +PE +ILT L V P G L Sbjct: 225 ALQLLRAVPDQDCPLLDMDPFCGRPEKLILTNLIVPP---------GGSGSNEDPLTTGL 275 Query: 270 RRVINRNNRLKRLLDLAAPDII-VRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLA 328 KR+ D I + LQ V + G K+ + Sbjct: 276 A--------AKRVEDAGGQKIERIMQTWEALQVHVALYFNGDLPGLPKDLKPKKAPRGFY 327 Query: 329 DMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELR 388 +KGKQGRFR NL GKRV+YSGR+VI+ P + + +P + L P + ++ Sbjct: 328 QRLKGKQGRFRGNLSGKRVNYSGRTVISPDPNASIDEVCVPYHVCKILTYPEMVNDYNIQ 387 Query: 389 GLATTIKAAKKMVE-------REEAVVWD------------------ILDEVIREHPVLL 423 L ++ + +D + +I L Sbjct: 388 RLRAAVENGPDNYPGAVLLEKSRDKRTYDLAHCNRQKSARELAKGDIVRRHLIDGDYALF 447 Query: 424 NRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARAL 483 NR P+LHR+ I + + + VC YNADFDGD+M +HVP T EA+ EA L Sbjct: 448 NRQPSLHRMSIMCHRVKARPWRTFRFNECVCKPYNADFDGDEMNLHVPQTEEAKAEAALL 507 Query: 484 MMSTNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVLTGPKEAERLYRSGLA 542 + +T+N+ +P NGEP+I QD + G + ++ +D K + M + L S Sbjct: 508 LRTTHNLCTPCNGEPLIAACQDFITGCFLISQKDTFFTKAKVMQMVCAFSDGSLKIS--L 565 Query: 543 SLHARVKVRITEYEKDANGELVAKTSLKD------------------------------- 571 + A VK K ++ + Sbjct: 566 PVPAIVKPVAMWTGKQVFSMMMRPSKDDPHQVDLTEKNKSFDKNYEKSEVKKLGRDLTIG 625 Query: 572 --TTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGF 629 + +I L +++A ++ S + R + V ++ Sbjct: 626 ERSLCPEDGFVIIRSSRLLCGFLDKANVGESKSTIFYRLLRDYSAQAAVDGMLRMTKLTT 685 Query: 630 AYAARSGASVGIDDMVIP----EKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDI 685 Y G S+G++D+ P ++K +I A + + +++SG + Sbjct: 686 RYLMERGFSIGLEDVTPPQELTDEKAVLIKTAFDKCSGYIAEYKSGRIECQPG------- 738 Query: 686 WAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRG 745 +A + + + +L + +N+ +MA G++GS + Q+ + G Sbjct: 739 -QSAEETLESFIRKDLNQVREEAGSLCRKVLSPYNAPKIMAKCGSKGSPINMAQMIALVG 797 Query: 746 LMAKPDGS--------------------IIETPITANFREGLNVLQYFISTHGARKGLAD 785 + + + +F GL ++F T R+GL D Sbjct: 798 QQILNGSRVPNGFEDRPLPHFRRFAKVPMAKGFVANSFYTGLTPAEFFFHTMSGREGLVD 857 Query: 786 TALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEP----------L 835 TA+KTA +GY+ RRL+ +DLVV D + M G D +P Sbjct: 858 TAVKTAETGYMQRRLMKALEDLVVHYDTTVRNSSGHMIQFCYGDDGLDPQGMETDDCAVD 917 Query: 836 RDRVLGRVTAEDVLKPG-----------TADILVPRNTLLHEQWCD---------LLEEN 875 + + V A D P T + ++ L E Sbjct: 918 LEHLFVHVLASDRDGPPPVTLQPAAVISTFESILKEQDLRDYDHPYCPLGLDVSADKEHF 977 Query: 876 SVDAVKVRSVVSCDTDFGVCAHCYG---------RDLARGHIINKGEAIGVIA------- 919 ++ ++V + D A+ H++N ++ Sbjct: 978 FLNQLRVFLEKRAQQLAEIRQRIGLAPALEAPAEDDPAKRHLVNNLMSVTREDMRIFVEK 1037 Query: 920 -----AQSIGEPG---------------TQLTMRTFHIGGAASRAAAESSIQVKNKGSIK 959 +++ EPG TQ+T++TFH G A+ + Sbjct: 1038 ALFKFRRTVVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVAAMNVTLGVPR-------- 1089 Query: 960 LSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVAN 1019 +K ++N++ + +L+ +ES+ A L T+ Sbjct: 1090 ---IKEIINAAKNISTPVITAKLE-----NDREESFARQVKARLETL---------TLGE 1132 Query: 1020 WDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALK 1079 H V E G+VR ++ + I R+ E+T + ++DS + K L Sbjct: 1133 VADHFDVVCNEDGGYVRVK--LNLKVIQRKHLEVTMNT---IIDSIAASRLTKIKHEHLS 1187 Query: 1080 I-VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGL 1138 + V + + A + + + I GL Sbjct: 1188 VMSSEVFQAVPVCDSKTVANRVHALRHLANVLPNCVI--------------------TGL 1227 Query: 1139 PRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNV 1198 P + A+ P E G S + + ++ TP Sbjct: 1228 PGIRRAIIAKDPNE--------GTFSIAIDGTDLKGVMATPGVIG--------------- 1264 Query: 1199 FEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVR 1258 + ++ + G+ A I+++VQ V G+ IN +H ++ Sbjct: 1265 -----------TTVDCNHVMELEQTLGIEAARSIIMDQVQYVMSNYGIHINPRHTMLMSD 1313 Query: 1259 QMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLA--T 1316 M K + LGIT+ +A Sbjct: 1314 LMTFKGEV----------------------------------------LGITRFGIAKMK 1333 Query: 1317 ESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAG 1376 ES ASF++TT L +AA+ G D + G+ E +I+G + GTG + Sbjct: 1334 ESVFMLASFEKTTDHLFDAALRGTTDSVDGVSECIILGVPMRIGTGLFKLLHETKVEEQP 1393 Query: 1377 E 1377 + Sbjct: 1394 K 1394 >UniRef50_A9BF32 DNA-directed RNA polymerase subunit beta' n=1 Tax=Petrotoga mobilis SJ95 RepID=RPOC_PETMO Length = 1643 Score = 750 bits (1936), Expect = 0.0, Method: Composition-based stats. Identities = 437/1336 (32%), Positives = 652/1336 (48%), Gaps = 110/1336 (8%) Query: 129 DMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGD------------EF 176 ++ +++ + F +G E L E D + + D +F Sbjct: 337 NVIDKELVSEIEFPEKKFEKGTKITQEVLNELQEFGVKDLVAKEEDGTEKIFQINRYEKF 396 Query: 177 DAKMGAEAIQALLKSMDLEQECEQLREELNET-NSETKRKKLTKRIKLLEAFVQSGNKPE 235 + GAEAIQ LL +DLE +L EL + K K+ +R+KL++ F++SGN+PE Sbjct: 397 EYGYGAEAIQKLLTKIDLEVLKARLESELEKLDRKSQKSVKILRRLKLVKDFIKSGNQPE 456 Query: 236 WMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNE 295 W+I ++PV+PPDLRPL+ +DGGRFA +DLNDLYR+VINRNNRL++LL++ AP+IIVRNE Sbjct: 457 WLITNIIPVIPPDLRPLIQIDGGRFAATDLNDLYRKVINRNNRLRKLLEMEAPEIIVRNE 516 Query: 296 KRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVI 355 KR+LQ+AVD+L NGR G+ +T N+RPL+SL D++KGK+GRFR+NLLGKRVDYSGR+VI Sbjct: 517 KRILQQAVDSLFYNGRVGKPMTDRNRRPLRSLTDLLKGKKGRFRRNLLGKRVDYSGRAVI 576 Query: 356 TVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGL---ATTIKAAKKMVEREEAVVWDIL 412 VGP L++H+CGLPKKMALELFKPF+ +L + K K ++E+E W++L Sbjct: 577 AVGPDLKIHECGLPKKMALELFKPFVLAELLRDSNVASKSARKFKKTIIEKEMPEAWEVL 636 Query: 413 DEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPL 472 +EVI+ HPVLLNRAPTLHR+ IQAF P LIEG AI+LHPLVC +NADFDGDQMA+H+PL Sbjct: 637 EEVIKGHPVLLNRAPTLHRVSIQAFIPKLIEGNAIRLHPLVCPPFNADFDGDQMAIHIPL 696 Query: 473 TLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT--RDCVNAKGEG------ 524 + AQ E++ LM+S NI+SPANG+P+ +P +D++ G YY+T D + Sbjct: 697 SNIAQAESKFLMLSRYNIISPANGKPLSMPGKDIIAGAYYLTMHEDEKFKNLKVPTKVSE 756 Query: 525 --------MVLTGPKEAERLYRSGLASLHAR-------VKVRITEYEKDANGELVAKTSL 569 + + EA Y + + + S+ Sbjct: 757 LGKNGYVKHIFSEDLEATYAYEYLKIVDSDIYLQDGKLIWKKSDLPLHEPVAFRYKDGSI 816 Query: 570 KDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGF 629 TT+G+ I VP+ L Q + KK + +++ + G+ T D I GF Sbjct: 817 LKTTIGKIIFNEEVPEDLR--DYTQKMDKKNLKELIFNTFEKHGIDRTADLLDSIKDFGF 874 Query: 630 AYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAA 689 YA SG ++ I D+++ K+ E+I E++ EV I+ ++ G +T ERY ++I IW +A Sbjct: 875 HYATLSGLTISIRDVLVSPKREELIEESKGEVLRIESLYEEGYLTDNERYKEIIKIWESA 934 Query: 690 NDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAK 749 +V++ + +FN I+MM +SGARG+ Q++QLAGMRGLMA Sbjct: 935 TAKVTEETAKTYRK-------------YTFNPIWMMIESGARGNIDQLKQLAGMRGLMAD 981 Query: 750 PDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVV 809 P G IIE PIT+NF+ GL+ L++F STHG+RKG ADTAL+T+ +GYLTRRLVDVAQ + + Sbjct: 982 PSGKIIEVPITSNFKNGLSELEFFTSTHGSRKGSADTALRTSTAGYLTRRLVDVAQSITI 1041 Query: 810 TEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTL------ 863 TE+DCGT +GI + E L D + GRV A+DVL P T +++ Sbjct: 1042 TEEDCGTDKGIEARELWADDSKIENLSDFLFGRVLAKDVLDPETKEVIFNPQADKKYERG 1101 Query: 864 -LHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGH-----IINKGEAIGV 917 + ++ N V + V + + Y L +I KGE I Sbjct: 1102 IILKEKDAQFLANYVKEIPVSKEKTIK-IEDMPKDSYLESLEDVQVEGKVLIKKGEEITE 1160 Query: 918 IAAQSIGEPGTQ------LTMRTFHIGGAASRAAAESSIQVKNKGSIKLS-NVKSVVNSS 970 A + G Q T + G + + K ++ V V+ Sbjct: 1161 EAIEEAFLHGIQKLDVKEYTAVDYVYSGEDLKVEIDGKTVTLLKYQERIDLKVSKVLEKH 1220 Query: 971 GKLVITSR-----NTELKLIDEFGRTKESYKVPYGAVLAKGDGEQV--AGGETVANWDPH 1023 G +T R + L E G + Y + GE V +++ Sbjct: 1221 GIKTVTVRPSIFIRSPLTCESENGLCAKCYGMDLSNYKLVNRGEAVGIIAAQSIGEPGTQ 1280 Query: 1024 TMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDA 1083 G +D+ G + E + + ++ + + + Sbjct: 1281 LTMRTFHTGGIATTSDITQGLPRAEELFEARKKTKGPEGEFSKTKGIVRAIERDTENKRG 1340 Query: 1084 QGNDVLIPGTD-MPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA 1142 + ++I +D Y + +E+G ++ +G L + G P Sbjct: 1341 RRLKIIIENSDGELESYEADYRTKAVVEEGDKVLAGQRLTTGNIKPRNILKELGVGPLAN 1400 Query: 1143 DLF-EARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVF-- 1199 L E ++ + + +I D +++ + + Sbjct: 1401 YLLSEIKKIYAEQGVDIHDKHFEIIIRQMINKVEIIDGGDTDFMPGDLVSYGKVQKINEE 1460 Query: 1200 ---------EGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKIND 1250 E + G ++ P + + E+ + Q ++ N Sbjct: 1461 ILEENSYITENRELVVGKKLAKRVIIPAEDEEEEEDKIFEQG--TEITEEILNQIIETNI 1518 Query: 1251 KHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGIT 1310 K IEV K G + + +++ N K Y R LL IT Sbjct: 1519 KEIEVYEEY---KEITTEEGKT-----------HLVGTSKKYLINPKDTIKYERRLLRIT 1564 Query: 1311 KASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRM 1370 KASL E ++SAASFQ+T ++LTEAA+ GK D L+GLKENVIVG+ IPAGTG + D+ Sbjct: 1565 KASLEREGWLSAASFQQTVQILTEAAIEGKVDRLKGLKENVIVGQPIPAGTGLKLYADQN 1624 Query: 1371 RRRAAGEAPAAPQVTA 1386 E A Sbjct: 1625 YEVVQPEKEAEAAQEK 1640 Score = 156 bits (393), Expect = 7e-36, Method: Composition-based stats. Identities = 76/147 (51%), Positives = 104/147 (70%) Query: 9 KAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDY 68 + + IKI +ASP I S GEVKKPET+N+RT KPE+DGLFC +IFGPVKDY Sbjct: 3 NVSSFQRKIAKIKIGIASPQSILEASNGEVKKPETLNHRTGKPEKDGLFCEKIFGPVKDY 62 Query: 69 ECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLL 128 EC CGKYK K+ G +CE+CGV+V + RR ++GHIELA+P +HIW+LKS PS + ++L Sbjct: 63 ECACGKYKGKKYEGTVCERCGVKVESKEARRRKIGHIELATPISHIWYLKSSPSILSIIL 122 Query: 129 DMPLRDIERVLYFESYVVIEGGMTNLE 155 ++ ++D+E ++Y+ S VIE L Sbjct: 123 NIGVKDLENIIYYGSKRVIERAYLTLP 149 >UniRef50_Q1J0P7 DNA-directed RNA polymerase subunit beta' n=11 Tax=Bacteria RepID=RPOC_DEIGD Length = 1537 Score = 750 bits (1936), Expect = 0.0, Method: Composition-based stats. Identities = 411/976 (42%), Positives = 573/976 (58%), Gaps = 66/976 (6%) Query: 175 EFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKP 234 +F+AKMGAEA++ LL +DL+Q +L E++ + NS KR K KR++++ AF +SGN P Sbjct: 458 DFEAKMGAEAVKELLDDLDLDQLEAELSEQMKD-NSRHKRAKARKRLEVVRAFKRSGNHP 516 Query: 235 EWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRN 294 WMIL +PV+PPDLRP+V +DGGRFATSDLNDLYRR+INRNNRLK+L+ APD+I+RN Sbjct: 517 SWMILETVPVMPPDLRPMVQVDGGRFATSDLNDLYRRLINRNNRLKKLIGQGAPDMIIRN 576 Query: 295 EKRMLQEAVDALLDNGRRGRAITGSN-KRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRS 353 EKRMLQEAVDAL+DNGRRG +T R L+SL D++ GKQGRFRQNLLGKRVDYSGRS Sbjct: 577 EKRMLQEAVDALIDNGRRGSPVTNPGSDRSLRSLTDLLGGKQGRFRQNLLGKRVDYSGRS 636 Query: 354 VITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAV---VWD 410 VI VGP L+LHQCG+PK+MALELFKPF++ LE +G T IK A+KM+ER VWD Sbjct: 637 VIVVGPQLKLHQCGVPKRMALELFKPFLFKVLEEKGEVTNIKQARKMLERYRDTRDSVWD 696 Query: 411 ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHV 470 L+EVI + VLLNRAPTLHRLGIQAFEPVL+EG++IQLHPLVC A+NADFDGDQMA+HV Sbjct: 697 ALEEVIEDKVVLLNRAPTLHRLGIQAFEPVLVEGQSIQLHPLVCEAFNADFDGDQMAIHV 756 Query: 471 PLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGP 530 PL+ +AQ EAR M+S +N+LSPANGEP + PS+D++LG++ +T+ + G G Sbjct: 757 PLSAQAQAEARIQMLSAHNLLSPANGEPNVKPSRDIILGIFTLTQLRKDNLGAGSEFANE 816 Query: 531 KEAERLYRSGLASLHARVKVRITEYEK------------------------DANGELVAK 566 ++A + G +L+ ++V E + + Sbjct: 817 QDALKALDEGRVALNTPIRVNGVETSPGRLKYVFSSPDEAIMAVDRGEIDYQDHVRIRLN 876 Query: 567 TSLKDTTVGRAILWMIVPKGL--------PYSIVNQALGKKAISKMLNTCYRILGLKPTV 618 ++ +T+ GR + +V + L ++ A K ++ M+ CY+ LG++ T Sbjct: 877 GTVYETSAGRVMFRRLVQEALGAQGHLVDTLVNLDTAYEKDSLKDMVMACYKELGIEATA 936 Query: 619 IFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGER 678 D + +GF + SG ++GIDD+V+P K E+++EA+ ++A I++ ++ G +T ER Sbjct: 937 GLLDALKDSGFKLSTISGITIGIDDIVLPPNKRELLAEADEKLAAIEQNYEFGFMTDEER 996 Query: 679 YNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIR 738 Y +V+ +W D V A+ +N + FN +++M+ SGARG+ QIR Sbjct: 997 YKQVVQLWNDTTDEVKNAVFENFS------------RNYPFNPLWIMSQSGARGNPQQIR 1044 Query: 739 QLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTR 798 QLAGMRGLMA+PDGS IE PI A+FREGL VL+YFISTHGARKG ADTAL+TA+SGYLTR Sbjct: 1045 QLAGMRGLMARPDGSTIEVPIRASFREGLTVLEYFISTHGARKGGADTALRTADSGYLTR 1104 Query: 799 RLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDR--------VLGRVTAEDVLK 850 +LVDVA ++VV + DCGT + P+ + R R + GR DV Sbjct: 1105 KLVDVAHEVVVRDVDCGTT-DYTVMPLGTTDERTGEWRTRKGSEIETAIYGRTLTADVEL 1163 Query: 851 PGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIIN 910 I + L + + ++ V VR+ ++C GVC CYG DL++ ++ Sbjct: 1164 SDGRVIPAGQMLSLEDVKAITRDAKAIGEVFVRTPLNCRVRAGVCQKCYGYDLSQAKPVS 1223 Query: 911 KGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRA-AAESSIQVKNKGSIKLSNVKSVVNS 969 GEA+GV+AA+SIGEPGTQLTMRTFH GG A +V + ++VV Sbjct: 1224 LGEAVGVVAAESIGEPGTQLTMRTFHTGGVAGGGDITMGLPRVIELFEARKPKTQAVVAD 1283 Query: 970 SGKLVITSRNTELKLIDEFGRT-----KESYKVPYGAVLAKGDGEQVAGGETV--ANWDP 1022 +V E L+ K K+ L DG+ V G+ + +P Sbjct: 1284 RDGVVRIEEEEERYLVRIEAEDEAFSSKTPMKISKSLRLIVRDGDHVEAGQPLTRGAINP 1343 Query: 1023 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD 1082 H + + + R+ + Q ++ V++ R D + Sbjct: 1344 HDLLLYKDTDAAQRYLVEEVQRVYRSQGVKVHDKHIEVIVRQMLRYVEITDGGDTDLLEG 1403 Query: 1083 AQGNDVLIPGTDMPAQ 1098 + + Sbjct: 1404 QTVERWEVDQANDALP 1419 Score = 284 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 136/378 (35%), Positives = 186/378 (49%), Gaps = 7/378 (1%) Query: 1018 ANWDP-HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRP 1076 W + T + G D+ ++ L + + + G +R Sbjct: 1138 GEWRTRKGSEIETAIYGRTLTADVELSDGRVIPAGQMLSLEDVKAITRDAKAIGEVFVRT 1197 Query: 1077 ALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDTLARIPQESGGT---K 1132 L G G D+ + V + I G L +GG Sbjct: 1198 PLNCRVRAGVCQKCYGYDLSQAKPVSLGEAVGVVAAESIGEPGTQLTMRTFHTGGVAGGG 1257 Query: 1133 DITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSD-PYEEMIP 1191 DIT GLPRV +LFEAR+PK A++A+ G+V +E + + + I Sbjct: 1258 DITMGLPRVIELFEARKPKTQAVVADRDGVVRIEEEEERYLVRIEAEDEAFSSKTPMKIS 1317 Query: 1192 KWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDK 1251 K +L V +G+ VE G ++ G PHD+L + A RY+V EVQ VYR QGVK++DK Sbjct: 1318 KSLRLIVRDGDHVEAGQPLTRGAINPHDLLLYKDTDAAQRYLVEEVQRVYRSQGVKVHDK 1377 Query: 1252 HIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITK 1311 HIEVIVRQMLR I + G +D LEG+ VE V AN L GK A++ LLGITK Sbjct: 1378 HIEVIVRQMLRYVEITDGGDTDLLEGQTVERWEVDQANDAL-PEGKTPASWKPVLLGITK 1436 Query: 1312 ASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMR 1371 +SL T+S++SAASFQ TT VLTEA++ G+ DEL GLKENVI+G+LIPAGTG ++ Sbjct: 1437 SSLTTKSWLSAASFQHTTHVLTEASMRGQVDELIGLKENVILGKLIPAGTGLTTVREMQV 1496 Query: 1372 RRAAGEAPAAPQVTAEDA 1389 + DA Sbjct: 1497 ADERTLEKYGQTSVSTDA 1514 Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats. Identities = 93/175 (53%), Positives = 126/175 (72%), Gaps = 5/175 (2%) Query: 15 EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74 ++F ++IA+ASP IR WSFGEV+KPETINYRT KPER+GLF RIFGP+KDYEC CGK Sbjct: 2 KDFSKVRIAIASPAKIREWSFGEVEKPETINYRTLKPEREGLFDERIFGPIKDYECACGK 61 Query: 75 YKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRD 134 YKR ++ G +CE+CGVEVT +KVRR RMGHI+LA+P AHIW++K PS+IG LLD+ Sbjct: 62 YKRQRYEGKVCERCGVEVTSSKVRRYRMGHIDLATPAAHIWYVKDTPSKIGTLLDLSAAQ 121 Query: 135 IERVLYFESYVVIEGGMT-----NLERQQILTEEQYLDALEEFGDEFDAKMGAEA 184 +E+VLYF S++V + L R ++L++++Y + + + G EA Sbjct: 122 LEKVLYFSSFLVTDPRNAQKDGRPLRRGELLSDDEYRELRFGRQETYTLPSGTEA 176 >UniRef50_B8BQ02 DNA-directed RNA polymerase n=1 Tax=Thalassiosira pseudonana CCMP1335 RepID=B8BQ02_THAPS Length = 1627 Score = 744 bits (1920), Expect = 0.0, Method: Composition-based stats. Identities = 276/1528 (18%), Positives = 523/1528 (34%), Gaps = 248/1528 (16%) Query: 6 KFLKAQTKTEEFDAIKIALASPDMIRSWSFGE------------VKKPETINYRTFKPER 53 F + + ++ + +P+ +R +S + V + ET + +P Sbjct: 23 NFGHSSARLRRIKKLQFGIINPEELRQYSVTQAITVNGRKIPAGVTRYETY--MSGQPVY 80 Query: 54 DGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAH 113 G+ R+ K GHIELA P H Sbjct: 81 GGVNDPRLGD-----------------------------LHDKSDPGYFGHIELARPVYH 111 Query: 114 IWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLER-QQILTEEQYLDALEEF 172 F+ D+ L+ + V + S + +E +R +QI ++ LDA+ Sbjct: 112 QGFI-----------DVTLKALRCVCFHCSRITMEDTEYKFQRARQIRNRKRRLDAMHAL 160 Query: 173 GDEFDAKMGAEAIQALLKSMDLEQECEQ-------------LREELNETNSETKRKKLTK 219 Q + L E E ++ ++ + KK+ Sbjct: 161 IRPKKKCDHCNGYQPKYTKVGLHVEIEYADEMERVPGSSGDKKQFMSAQKAVDIFKKMRD 220 Query: 220 RIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGG-RFATSDLNDLYRRVINRNNR 278 + +PEWM ++V+PV P +RP V + GG + + DL ++ N Sbjct: 221 DEVKALGLDVTWARPEWMCVSVMPVPPLHVRPSVVMGGGAQSSEDDLTHQLVNIVKSNIA 280 Query: 279 LKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRA-ITGSNKRPLKSLADMIKGKQGR 337 LK + P+IIV ++ LQ V A ++N RG IT + RPLK+LA +K K+GR Sbjct: 281 LKTAIQNGEPNIIVEQFEQALQHNVAAFVNNEMRGMPQITQRSGRPLKTLAQRLKAKEGR 340 Query: 338 FRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI--- 394 R NL+GKRVD+S R+VIT P L +HQ G+P+ +A+ L P ++ L+ + Sbjct: 341 IRGNLMGKRVDFSARTVITADPNLGIHQVGVPRSVAMNLTVPTRVTPFNIQELSALVANG 400 Query: 395 ---KAAKKMVEREEAVV-----------------WDILDEVIREHPVLLNRAPTLHRLGI 434 K + R + + W + + VL NR P+LH++ I Sbjct: 401 PTEHPGAKHIIRSDGLRIDLRYVKNKSDLLLANGWIVERHLRDGDIVLFNRQPSLHKMSI 460 Query: 435 QAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPA 494 +++ +L+ + YNADFDGD+M +HVP +L A+ EA +M S I+S Sbjct: 461 MGHMAKVLDWSTFRLNLSCTSPYNADFDGDEMNLHVPQSLPARAEAELMMHSPRVIVSGQ 520 Query: 495 NGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITE 554 + P++ QD +L + MT+ V K + M+ + G A + Sbjct: 521 SNRPVMGIVQDSLLAVQKMTKRDVFVKKDLMMNILMWVED---WDGRIPPPAIYRPEELW 577 Query: 555 YEKDANGELVAKTSL----------KDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKM 604 K ++ K +L +T L ++ L +++ + + Sbjct: 578 TGKQIMSMILPKINLTGKANNGGPGPNTFNAYDNLVRVMEGELIEGTIDKKTIGSGMGGL 637 Query: 605 LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVG----IDDMVIPEKKHEIISEAEAE 660 ++T + +G + T F +Q + +S S+G I D E+ I++A+ + Sbjct: 638 IHTAWLDVGHEDTARFMNQTQVVTNYWVLQSSFSIGVCDTIADFATMEQIASTINKAKLQ 697 Query: 661 VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFN 720 V ++ Q Q G + + + + + L T + N Sbjct: 698 VLDLVRQGQRGELETQPGRTMI--------ESFEQFVNKVLNTARDHAGKSAQASLDETN 749 Query: 721 SIYMMADSGARGSAAQIRQLAGMRGLM--------------------AKPDGSIIETPIT 760 S+ M +G++GS I Q+ G G + Sbjct: 750 SVKAMVTAGSKGSFINISQIIACVGQQNVEGNRIPYGFKRRTLPHFSKDDLGPESRGFVE 809 Query: 761 ANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGI 820 ++ GL ++F G R+GL DTA KTA +GY+ RRLV + ++ D G Sbjct: 810 NSYLSGLTPQEFFFHAMGGREGLIDTACKTAETGYIQRRLVKAMETVMARYDGTLRTSGG 869 Query: 821 MMTPVIEGGDVKEPL-------------RDRVLGRVTA--EDVLKPGTADILVPRNTLLH 865 + + G D + + + R +D + + Sbjct: 870 QIVQFLYGEDGMDAVWIERQSFDSLTLNKREFDERYLLHSDDPDFGYDDQNIPFLEAEVI 929 Query: 866 EQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGE 925 E E + ++ + + R+ R +N V I Sbjct: 930 EDCRHNPEVQQMLDREMEVLKEDQAMLRIIM--ANREAGRESDVNSYAPGNVKRV--IQN 985 Query: 926 PGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSN------VKSVVNSSGKLVITSRN 979 Q + + E + + + + + ++ + +++I S Sbjct: 986 ALRQFQIDKGLPSNLHPKDVIEKIEAMLRRLVVVVGDDLLSVEAQNNATTLYRILIRSYL 1045 Query: 980 TELKLIDEFGRTKESYKVPYGAVL------AKGDGEQ--VAGGETVANWDPHTMPVITEV 1031 +++ E+ ++ + G + GE V +++ Sbjct: 1046 ASKRVLREYRLSEAALIWVLGEIEARFHHAKVSPGEMAGVLAAQSIGEPATQMTLNTFHY 1105 Query: 1032 SGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIP 1091 +G + + + + + + + G L + + Sbjct: 1106 AGVSAKNVTLGVPRLKEIINVAKTVKTPGLTIYLQNHVSGDADVAKLVHSMIEYTVLTDL 1165 Query: 1092 GTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQE---SGGTKDITGGLPRVADLFEAR 1148 Y + +D + + +E + L +V + + Sbjct: 1166 TKLTEIYYDPDPVNTIVAKDREFVKEYYEMGEETEEDLRRLSPWVLRIELNQVVMV--DK 1223 Query: 1149 RPKEPAILAEI------SGIVSFGKETKGKRRLVITPVDG-------------------- 1182 + K I AEI V + I V+ Sbjct: 1224 KIKMNEIAAEIANEYGSDLNVLVSDDNADDLVARIRIVNDLPMVQGMDEDGNPIMTDDDV 1283 Query: 1183 ----------SDPYEEMIPKWRQLNVFEGERV-------------ERGDVISDGPE---A 1216 + M+ + V + ++V E+G I+D Sbjct: 1284 ELGQEDDVFLKRLEKNMLHTLKLRGVDDVKKVFMRGGAKKTVWDDEKGFGITDEWVLETD 1343 Query: 1217 PHDILRLRGVHAVT--RYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDF 1274 +++ + G+ V R I N++ +V+ + G++ I +R ++ Sbjct: 1344 GTNLMSVLGIDYVDATRTISNDIVEVFMVLGIEGVRAAILSELRNVIS------------ 1391 Query: 1275 LEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTE 1334 +G V Y + + +G + A GI + + SF+ET +L + Sbjct: 1392 FDGSYVNYRHLACLVDVMTMHGHLMAVDRH---GINRV---ESGPLLRCSFEETVDMLND 1445 Query: 1335 AAVAGKRDELRGLKENVIVGRLIPAGTG 1362 AA + + LRG+ EN+++G+L GTG Sbjct: 1446 AACFAEEEVLRGVTENIMMGQLARVGTG 1473 >UniRef50_D0NAG7 DNA-directed RNA polymerase n=1 Tax=Phytophthora infestans T30-4 RepID=D0NAG7_PHYIN Length = 1534 Score = 744 bits (1919), Expect = 0.0, Method: Composition-based stats. Identities = 271/1572 (17%), Positives = 510/1572 (32%), Gaps = 264/1572 (16%) Query: 4 LLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFG 63 + + + + + + L S + S V+ + +T +P+ +G+ R+ Sbjct: 17 VKQLVLENDRPAKISHLNFGLLSDVDMMRMSELRVQSKDLFKVQTREPQGNGVLDKRLG- 75 Query: 64 PVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSR 123 + ++ CE C +++ G+I+L P HI + K++ Sbjct: 76 --------------VSNKKDTCETCHLKLADC---VGHFGYIKLELPVFHIGYFKAITEI 118 Query: 124 IGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAE 183 + + RVL + + + +L + + + Sbjct: 119 LQNICKC----CSRVLLPPTERELFLRRMRDPKADVLRLVGLRKKIATLCKKTVKCPHCD 174 Query: 184 AIQALLKSMDLE------------------------------------QECEQLREELNE 207 AI ++ + + +E+L+ Sbjct: 175 AINGTVRKITSTTLKLVHEKYRAKATHDLRNVFVAQFAEAQANNPEIGAHLPKAQEDLSP 234 Query: 208 TNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGR-FATSDLN 266 + K++ + L G +PE ++L + V P +RP V +DGG D+ Sbjct: 235 LVVQQLFKEIPDQDCELLWVDADGGRPEKLLLNSVLVPPVCIRPSVAMDGGTGSNEDDIT 294 Query: 267 DLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKS 326 + ++ N L+ L A +V + LQ V L++ G K ++ Sbjct: 295 VKLQEIVQVNFALRAALQKGASLKMVMEDWDFLQIQVAQLMNGDTPGLVKPPGAKTGIRG 354 Query: 327 LADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLE 386 L +KGKQGRFR NL GKRVD+SGR+VI+ P LR+ Q G+P+ +A + P + Sbjct: 355 LCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDQVGVPEHVAKTMTYPEKVTRYN 414 Query: 387 LRGLATTIKAAKKMVEREEAVVWD-------------------------ILDEVIREHPV 421 + L + + + + + + V Sbjct: 415 IEKLRKCVVNGPHVHPGANVIRIEGQKFTKNLLYGDRASLADELKIGDIVERHMEDGDIV 474 Query: 422 LLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEAR 481 L NR P+LH++ I + ++ + + + VC+ YNADFDGD+M +H+P T EA+ EA Sbjct: 475 LFNRQPSLHKMSIMSHRVKVMPWRTFRFNECVCSPYNADFDGDEMNMHLPQTEEARTEAI 534 Query: 482 ALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGL 541 LM N+++P NGEP++ +QD + Y +T+ + E Sbjct: 535 TLMGVEQNLITPRNGEPLVAATQDFLTASYLLTQKNIFFNREQFCQV-ISIMSDANEHIE 593 Query: 542 ASLHARVKVRITEYEK---------DANGELVAKTSLKDTTVGRAILWMIVPKGLPY--- 589 A V K +A +++A LK+ M G Sbjct: 594 LPPPAIVLPVRLWTGKQVISLLVKPNAQTKVLANLELKERNYTSNKF-MCWKDGYVCFRN 652 Query: 590 -SIVNQALGKKAIS-----KMLNTCYRILGLKPTVIFADQIMYTGFAYAARS-GASVGID 642 ++ LGKK + + R G +++ + G S+GID Sbjct: 653 SELICGNLGKKTLGDGSKQGLFYVLIRDHGSHEAARCMNRLAKLCARWLGNFKGFSIGID 712 Query: 643 DMV----IPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMM 698 D+ + ++K +++ E+++ G ++ N + + + N + K Sbjct: 713 DVTPSEELSKEKQKLLQAGYDAANNSIEEYRRGKLSLKPGCNAIQSLESELNGLLGK--- 769 Query: 699 DNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSI---- 754 N+ +MA+ G++GSA I Q+ G + + Sbjct: 770 -----LRETAGAECMRTLPFHNNPRIMAECGSKGSALNISQMMACVGQQSVGGKRVPEGF 824 Query: 755 ----------------IETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTR 798 + + +F GL ++F T G R+GL DTA+KTA +GY+ R Sbjct: 825 VNRTLPHFLPHALHASAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMAR 884 Query: 799 RLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILV 858 RL+ +DL D + + G D P R L + L Sbjct: 885 RLMKALEDLSCQYDQTVRNSEGSVVQFTYGDDGLNPAYMEGDDRPVDFHRLLEHIRNTLP 944 Query: 859 PRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVI 918 HE L E +V R +I E +G + Sbjct: 945 D-----HESPALLPFELRRLGKQVVQRSQFQAILP---------TGRKFLIEIEEFLGSV 990 Query: 919 AAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSR 978 A++ G S + K + + SV+ + + T++ Sbjct: 991 ASE---------IAANRTSCGIESMDTEVKTYASKLEKAFDDDEAASVLKTKTQTGDTNK 1041 Query: 979 NTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFT 1038 ++++ E P+G + G ++ D + G + Sbjct: 1042 EKKIQI----STKLEKLTKPHGRRRLAKPEDS-DGDTEDSDGDLGLDVATYKQKGLDKVG 1096 Query: 1039 DMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQ 1098 +T + + D + L + + Sbjct: 1097 LPEWERTRFKTAKSRAEWTKRAAEDGTKEKEEAAWLLSHNVCRITTKQVEKLLEISLYKY 1156 Query: 1099 Y---FLPGKAIVQLEDGVQISSGDTLARIPQESGGTK--DITGGLPRVADLFEARRPKEP 1153 PG+A+ + G + G ++T G+PR+ ++ A + Sbjct: 1157 NRAGMEPGEAVGAVGAQSISEPGTQMTLKTFHFAGVASMNVTLGVPRLKEIINASKIIST 1216 Query: 1154 AILA--------EISGIV---SFGKETKGKRRLVITPVDGSDP----YEEMIPKWRQLNV 1198 I+ E S + K T G+ + I V D + + QL++ Sbjct: 1217 PIITAALVCKTDERSARIVKGRIEKTTLGEIAVHIKEVFARDQAYLSVKLDLTAIEQLHL 1276 Query: 1199 FEGERVERGDVISDGPEAPHDILRLR-------------------------------GVH 1227 R R +++ P +LRL G + Sbjct: 1277 NITARSVRNSILNAVGVGPRAVLRLLKEQHVLLNARCPDKLRLLAPPNYKGAKGETRGAY 1336 Query: 1228 AVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR------KATIVNAGSSDFLEGEQVE 1281 + + E+ V +QG+ ++ + + G ++ + V+ Sbjct: 1337 FALQALKAELPGVI-VQGIPTVNRAVINYEEVQDSSAAKSLHLLVEGYGLAEVMGIPGVD 1395 Query: 1282 YSRVKIANRELEANGKVGATYSRDL-------------LGITKASLATESFISA------ 1322 N +E +G +R+L +GI + L S I Sbjct: 1396 GLHTTS-NHIIEVEKTLGIEAARELISSEVNYIMSAYGIGIDRRHLMLLSDIMTFKGEVL 1454 Query: 1323 -------ASFQETTRVLTEAAVAGKRDEL------------RGLKENVIVGRLIPAGTGY 1363 A +E+ +L A+ D L G+ E +I+G IP GTG Sbjct: 1455 GITRFGIAKMKESVLML--ASFEKTTDHLFDAAVHSRTDAIVGVSECIIMGIPIPLGTGI 1512 Query: 1364 AYHQDRMRRRAA 1375 ++ + Sbjct: 1513 FKLLRQVDKPRV 1524 >UniRef50_A9CTJ8 DNA-directed RNA polymerase n=1 Tax=Enterocytozoon bieneusi H348 RepID=A9CTJ8_ENTBH Length = 1541 Score = 742 bits (1915), Expect = 0.0, Method: Composition-based stats. Identities = 275/1443 (19%), Positives = 515/1443 (35%), Gaps = 198/1443 (13%) Query: 15 EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74 ++ I L SP+ I+ S V PETI P+ +GL R+ K++ Sbjct: 7 KKIIGINFGLFSPEEIKKTSVVHVIHPETI--ENGVPKENGLIDLRMGTTEKNF------ 58 Query: 75 YKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRD 134 +C+ C + GHIEL P HI + ++I LL+ Sbjct: 59 ---------LCQTCNENMFDC---VGHFGHIELCKPMFHIGY----ITKIKKLLECICFY 102 Query: 135 IERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMD- 193 ++ F+ T E IL + + D+ E G++ I+ ++ Sbjct: 103 CSKIKDFKLLKEKTKNYTLEEAWNILKTKTFCDSENEKGEKIGCCNKQPIIKKEGMNLIA 162 Query: 194 -LEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPL 252 ++ ++ + LN KK+ F ++PE M++TVL V PP +RP Sbjct: 163 FMKGNDDEGKVILNGEKVCNIFKKIDASELKFIGFN-VNSRPENMLITVLLVTPPSVRPS 221 Query: 253 VPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRR 312 + DG + DL Y ++ N LK+ AP+ I+R+ +++LQ + L++N Sbjct: 222 ILTDG-LRSEDDLTHKYADIVKSNACLKKYEQDGAPNHIIRDYEQLLQFHLSTLINNEIS 280 Query: 313 GRAIT-GSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKK 371 G+ I + RP+KS++ +KGK+GR R NL+GKRVD+S RSVIT P + L + G+P Sbjct: 281 GQPIAMQKSGRPIKSISARLKGKEGRIRGNLMGKRVDFSARSVITPDPAIELDEVGVPLH 340 Query: 372 MALELFKPFIYGKLELRGLATTI------KAAKKMVEREEAVVWD--------------- 410 +A+ P + + L + V R + D Sbjct: 341 IAMIQTFPEKVNSININTLQKMVNNGPTEYPGANYVIRNDGQRIDLKYSRFDLKLEKGFI 400 Query: 411 ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHV 470 + ++ VL NR P+LH++ + ++ K +L+ V + YNADFDGD+M +H+ Sbjct: 401 VERHMLDNDIVLFNRQPSLHKMSMMGHRAKIMNNKTFRLNLSVTSPYNADFDGDEMNLHM 460 Query: 471 PLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVLTG 529 P + + E L + NI+SP + +P+I QD ++G+ T ++ K E M L Sbjct: 461 PQSYNTKSELINLASVSRNIISPQSNKPVIGIVQDTLVGVRLFTLKNTFFNKRETMNLLF 520 Query: 530 PKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPY 589 + + + + I +G + + +I L Sbjct: 521 TLDTLEEKVMEIINNPILI---IHNKISLWSGLQIFSAVFPNKFNFNYKGVVIKNSNLIT 577 Query: 590 SIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAAR-SGASVGIDDMVIPE 648 +++ +++ G F + + + + ++GI D +I Sbjct: 578 GTLSKITCGATHGGLIHVICNDYGCLEATKFINNVQRLINHFMFHINSFTIGIGDTIINP 637 Query: 649 KKHE----IISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTE 704 + E I+ A V E+ + G + + N ++KA Sbjct: 638 EIIEDCKSNIANAIHNVDELINMAKLGKLEKLPGLTIENTFESKVNLILNKARD------ 691 Query: 705 TVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGS----------- 753 + + N++ M SG++GS I Q+ G Sbjct: 692 -------YKGEITLCNNMNAMILSGSKGSKINIAQMTSCVGQQNVEGKRIPFGFEKRTLP 744 Query: 754 ---------IIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVA 804 I I+ ++ G+ +++ G R+GL DTA+KTA +GY+ RRLV Sbjct: 745 HFQKFDYSAISRGFISNSYLTGMTPQEFYFHAMGGREGLIDTAIKTAETGYIQRRLVKAM 804 Query: 805 QDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLL 864 +D VV D + + G D G++ + +L T D + Sbjct: 805 EDAVVRSDSSVRNGFGKIYQFAYGEDGFN-------GKILEKIILNKPTKDEFYIDINDI 857 Query: 865 HEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIG 924 + ++ + + + + + Y +++ G + + Q I Sbjct: 858 TNTLRN--NKSFIPREVIELLKTDVEIQKLNNEYYNYLEQNYSLLDNGMYVTPVNIQRI- 914 Query: 925 EPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKL 984 + + + ++K + V +N L +++ +++ Sbjct: 915 --LLNKKLNNRIKCNLSPYIIYDEIEKLKTNNLLWNYYVSYSLNPKKLLQTQTKSNFMEI 972 Query: 985 IDEFGRTKESYKVPYGAVLAKGDGEQVAGGET--------VANWDPHTMPVITEVSGFVR 1036 ++ + +V ++ + V T +A + ++ + Sbjct: 973 VNTIKIKLKEAQVEPNEMVGTLAAQSVGEPATQMTLNTFHLAGVASTITMGVPRLNEIIN 1032 Query: 1037 FTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGND-VLIPGTDM 1095 T I + Q + S + + E ++ L + D D +L ++ Sbjct: 1033 TTKNIKTPLMIVQLQKNDLQSCKNLRNKIEYSSLKDLYESFLLLYDPIITDTILDEDKEL 1092 Query: 1096 PAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAI 1155 YF I + I E I GL + + E + ++ Sbjct: 1093 VENYFEMPDEIDLDKCSSF--------CIRFELNKYHVIGRGL-DLEYIIEKIKLNIKSM 1143 Query: 1156 L-AEISGIVSFGKETKGKRRLVITPVDGSDP----YEEMIPKWRQLNVFEGERVERGDVI 1210 L I I S + K R+ + D Y E++ K +++ E +++ +I Sbjct: 1144 LDIGIHIIYSLPTDEKLILRIRLILNDKIKENLKFYNELVDKLLNIHIQGLEGIKKAYLI 1203 Query: 1211 SDG----------------------------PEAPHDILRLRGVHAVTRYIVNEVQDVYR 1242 + +I GV A+ I+ E+ V Sbjct: 1204 HNKDDTWTLQTDGINYQTILSFPNVDGSHTTSNDLFEIYETLGVEALRETIMTELTMVIE 1263 Query: 1243 LQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATY 1302 G +N +H+ ++ M Sbjct: 1264 NNGSYVNSRHLSLLSDVMTVC--------------------------------------- 1284 Query: 1303 SRDLLGITKASLATE---SFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPA 1359 GIT+ + E S + ASF+ET +L EAA + + G+ EN+++G+L P Sbjct: 1285 -GYPSGITRHGVNREIKASALKRASFEETVDILLEAAATAEENPAHGITENIMMGQLAPL 1343 Query: 1360 GTG 1362 GTG Sbjct: 1344 GTG 1346 >UniRef50_A8N128 DNA-directed RNA polymerase n=59 Tax=Dikarya RepID=A8N128_COPC7 Length = 1642 Score = 742 bits (1914), Expect = 0.0, Method: Composition-based stats. Identities = 254/1494 (17%), Positives = 502/1494 (33%), Gaps = 232/1494 (15%) Query: 5 LKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGP 64 +F + + ++ + SP+ I++ S +++ PE ++ T KP+ GL R+ Sbjct: 4 HQFAFSAAPVRKVKEVQFGILSPEEIKAVSVVKIEYPEVMDETTHKPKLQGLMDPRMGTI 63 Query: 65 VKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRI 124 ++++ C+ CG + + GHIELA PT F + + Sbjct: 64 DRNFK---------------CQTCGEGMAECP---GHFGHIELARPT-DPAFAEKIRHI- 103 Query: 125 GLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEA 184 P + + V I E+ + + + G + Sbjct: 104 ----RNPKQRMAVVWDHCKTKTICEADEPR--------EEGAEGDGDEPKKGHGGCGHQQ 151 Query: 185 IQALLKSMDLEQECEQLREELNETNSET-------------KRKKLTKRIKLLEAFVQSG 231 Q + + + + ++ +++ +E S KK++ L Sbjct: 152 PQIRKEGLKMFVQYKKSKDDDDEMKSLQPDKRLITPSEILTVFKKISDHDLHLLGLSDEY 211 Query: 232 NKPEWMILTVLPVLPPDLRPLVPLDGGR-FATSDLNDLYRRVINRNNRLKRLLDLAAPDI 290 +PEWMILTVLPV PP +RP + +DGG + DL +I ++ +KR + P Sbjct: 212 ARPEWMILTVLPVPPPPVRPSIAVDGGTMRSEDDLTYKLGDIIKASSNVKRCEEEGVPAH 271 Query: 291 IVRNEKRMLQE---AVDALLDNGRRGRAIT-GSNKRPLKSLADMIKGKQGRFRQNLLGKR 346 I+ +++LQ V +DN G + RP+K++ +KGK+GR R NL+GKR Sbjct: 272 IISEFEQLLQASIFHVATYMDNDFAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKR 331 Query: 347 VDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEA 406 VD+S R+VIT P L L + G+PK +A+ L P + L ++ Sbjct: 332 VDFSARTVITGDPNLELDEVGVPKSIAMNLTYPERVTPYNIAYLQELVRNGPTTYPGARY 391 Query: 407 VVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQM 466 VV D + + RA +LG E L +G YNADFDGD+M Sbjct: 392 VVRDTGERI---DLRYNKRADAFLQLG-WIVERHLKDGDT--------PPYNADFDGDEM 439 Query: 467 AVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMV 526 +HVP + E + E + I+SP +P++ QD + G+ T + Sbjct: 440 NMHVPQSEETRAELSQIAWVPRQIVSPQANKPVMGIVQDTLCGIRKFTLRDTFLDWNHVQ 499 Query: 527 LTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILW------ 580 E G+ A +K + K + + Sbjct: 500 NILLWVPE---WDGVVPTPAILKPKPLWTGKQILSLTIPRGINIQRASENKSSNPVFDDG 556 Query: 581 -MIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASV 639 +I Y IV++ + + +++ +R G + T + + +G S+ Sbjct: 557 MLIENGEFIYGIVDKKIVGASAGGLVHVVFREKGPEATKQLFTGLQMIVNFWLFHNGFSI 616 Query: 640 GIDDMVIPEKKHEI----ISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSK 695 GI D + + E I+E++A+VA++ E + + Sbjct: 617 GIGDTIADARTMEFITKNIAESKAKVAQVIEDANMDRLKTKPGM--------TLRESFES 668 Query: 696 AMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSI- 754 + L + ++ N++ M +G++GS I Q++ G + I Sbjct: 669 EVEGILNKARDSSGQYAQKHLKEDNNVKQMVVAGSKGSFINISQMSVCVGQQSVEGRRIP 728 Query: 755 -------------------IETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGY 795 + ++ GL ++F R+GL DTA+KTA +GY Sbjct: 729 FGFRHRTLPHFTKDDFSPEARGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGY 788 Query: 796 LTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKE---PLRDRVLGRVTAEDVLKPG 852 + RRLV +D++V D + + + G D + + + ++ Sbjct: 789 IQRRLVKALEDVMVCYDGTVRNSLGDLIQFVYGEDGMDAAFIEKQNIETFALSDKEFDHR 848 Query: 853 TADILVPRNTLLHEQWCDL-LEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINK 911 ++ E + ++++S++ R ++ Sbjct: 849 YRVDVMDPAGGFTENALQVGIDDSSLELQSKLDEEYARLVEDRRLLRNFIFPRRSANVDF 908 Query: 912 GEAIGVIAAQSIGEPGTQL-TMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSS 970 + + Q + + +Q+ + +S ++ + I + + Sbjct: 909 YLPVNL---QRLVQNASQIFHIDRRKPSDLDPAYIVDSIHELGKRLVIVRGDDPLSKEAQ 965 Query: 971 GKLVITSRN------TELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGG--------ET 1016 + R K+I++ T+E+++ G + K + G ++ Sbjct: 966 DNSTLLFRMHLRATFAARKVIEQMRLTREAFEWILGEIETKFNQSIAHPGEMCGTLAAQS 1025 Query: 1017 VANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRP 1076 + +G + + + T + + + + Sbjct: 1026 IGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATNIKTPSLTIHLQPEIAVAPELA 1085 Query: 1077 ALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISS----------------GDT 1120 + + + + Y + ED V + S Sbjct: 1086 KNVQQELAFTSLKTVTSAVEIWYDPNPTTTIIEEDEVFVESFFAIPDEEIERNLHKQSPW 1145 Query: 1121 LARIPQESGGTKDITGGLPRV-ADLFEARRPKEPAILAEI-------------SGIVSFG 1166 L R+ + D + V + + E + I +E SG Sbjct: 1146 LLRLVLDRSKMLDRKLTMHYVASRIAECFKSDLFVIWSEDNSETLVIRCRVLSSGDKDDP 1205 Query: 1167 KETKGKRRLVITPVDGSDPYEEMIPKWRQLN----------------------------V 1198 +E + + + ++ + + R +N Sbjct: 1206 EEVGLEEDIFLRQLENTMLNSVTLRGVRGINRVFLTASDRVTLAPDGSIKTEKGAEWILE 1265 Query: 1199 FEGERVERGDVI------SDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKH 1252 +G ++ + +I + GV A ++ E+++V G +N +H Sbjct: 1266 TDGTNLKGVMCLDGVDSTRTYSNNCVEIFTVLGVEAARAALMKEIRNVIEFDGSYVNYRH 1325 Query: 1253 IEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKA 1312 + ++ M L+ IT+ Sbjct: 1326 LGLLCDVMTH----------------------------------------RGTLMPITRH 1345 Query: 1313 SLAT--ESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 + + SF+ET +L EAA G++D+ G+ ENV+ G++ P GTG Sbjct: 1346 GINRADTGALMRCSFEETVEILMEAAAVGEKDDCHGIAENVMFGQMAPMGTGAF 1399 >UniRef50_B2ADZ3 DNA-directed RNA polymerase n=4 Tax=Dikarya RepID=B2ADZ3_PODAN Length = 1521 Score = 740 bits (1911), Expect = 0.0, Method: Composition-based stats. Identities = 244/1548 (15%), Positives = 456/1548 (29%), Gaps = 255/1548 (16%) Query: 2 KDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFK-PERDGLFCAR 60 + K L + F A+K + S I + EV + + P + G R Sbjct: 11 SENRKTLVKDQLPKRFKALKFGIQSTQDILNQGVLEVSDNLLYDVENNRAPFKHGPLDPR 70 Query: 61 IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120 + G C C ++ GH++L P HI +LK + Sbjct: 71 LQGTSS------------PKPDAKCHTCHQDLMGCP---GHFGHVKLPLPVFHIGYLKYI 115 Query: 121 PSRIGLLLDMPLR---------------------------------DIERVLYFESYVVI 147 + + + R +V + Sbjct: 116 QATLQNICKSCSRILLTNEERRRFLRSLRREQDNMARTAVLKRINEQCRKVRNCYHCGDL 175 Query: 148 EGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQEC----EQLRE 203 +G + L +++ ++ + + E + + E + + Sbjct: 176 QGTIRKLSCMKLVHDKFVAYNKSTAQKKVAPESKIEFDASFESAKAHFAELGKHTRRAMD 235 Query: 204 ELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATS 263 +++ K++ L + +PE + LP P +RP V + Sbjct: 236 DMHPLKVLNLFKEINSVDCELLGLDPAEGRPEMFLWRYLPAPPLCIRPSVAQESAS-NED 294 Query: 264 DLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRP 323 D+ ++ + L+ + AP + + LQ V +++ G + + Sbjct: 295 DITTKLAEIVIYSAHLREAMLKGAPLPSLMEQWEFLQLQVGMYVNSDVPGL-VQQGFGKV 353 Query: 324 LKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYG 383 + +KGKQGRFR NL GKRVD+SGR+VI+ P L + Q +P+++A L P Sbjct: 354 TRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIEQVAVPERVAKNLTYPERVH 413 Query: 384 KLELRGLATTIKAAKKMVER------------------------------EEAVVWDI-L 412 ++ L ++ + + D+ Sbjct: 414 ANNIQKLKACVRNGPTEYPGALQITKNQGEENEMKFLLKHMKPHILEKNADNLRIGDVVE 473 Query: 413 DEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPL 472 + VL NR P+LH+L I + + + +L+ VC+ YNADFDGD+M +HVP Sbjct: 474 RHLEDNDIVLFNRQPSLHKLSIMSHYAKIRPWRTFRLNECVCSPYNADFDGDEMNLHVPQ 533 Query: 473 TLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKE 532 T EA+ EA LM NN+ +P NGEPII +QD + Y ++ + Sbjct: 534 TEEARAEAINLMGVKNNLCTPKNGEPIIAATQDFITAAYLLSGKDRFYDRSSFTYICTQ- 592 Query: 533 AERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKG------ 586 A +K + K ++ V + KG Sbjct: 593 MLLGDTYLELPPPAILKPKALWTGKQIFNVMMRPNKESPVLVNLDAKNKVYNKGNLQPPD 652 Query: 587 ----------LPYSIVNQALGKKAIS-----KMLNTCYRILGLKPTVIFADQIMYTGFAY 631 ++ + K + + R G +++ Sbjct: 653 MDIDDSFLVVRNSEVICGRMDKSTVGEGKKNSVFYVILRDYGADYAAATMNRLAKLCARS 712 Query: 632 AARSGASVGIDDMV----IPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWA 687 G S+G+ D+ + E K ++ +A Q ++G + + + Sbjct: 713 LTLRGFSIGVGDVFPSQALTEHKLMLLEKATTVCDGFISQAENGTLEKAPGCDMKETLET 772 Query: 688 AANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM 747 + L E N+ +MA SG++GS + Q+ G Sbjct: 773 KLS--------GTLSAVRQAAGSYCTENLSRNNAPLIMAKSGSKGSEINVAQMIACVGQQ 824 Query: 748 AKPDGSIIE--------------------TPITANFREGLNVLQYFISTHGARKGLADTA 787 + + + +F GL+ ++ R+GL DTA Sbjct: 825 IIGGKRVADGFQNRTLPHFEKGDKRAAAKGFVKNSFYTGLHPTEFLFHAISGREGLVDTA 884 Query: 788 LKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAED 847 +KTA +GY++RRL+ +DL DD + G D +P+ R D Sbjct: 885 VKTAETGYMSRRLMKSLEDLSTQYDDTVRTSEGGIVQFQYGADRLDPVDMEGDARPVNFD 944 Query: 848 V-LKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARG 906 L L + +D + V V + Sbjct: 945 RTWNHSQTITWNNSEKGLLPSEIQKLTKELLDRQRALYVRRDMLTGEVITGLTDEQIRTS 1004 Query: 907 HIINKGEAIGVIAA-----QSIGEPGTQ---LTMRTFHIGGAASRAAAESSIQVKNKGSI 958 A+ A S+ TQ R G + + Sbjct: 1005 TDRAAYMAVDEHDAAREYLNSVQTYITQRATKLARIRKSVGLDPGVLEDDLAMQAAVNRV 1064 Query: 959 KLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESY---KVPYGAVLAKGDGEQVAG-- 1013 + ++ + + + + + G V Sbjct: 1065 NKGGSEMDIDLDDEARAKGQKHADLTAKVSEASLRKFIELCLEKYKKAQVEPGHAVGAVG 1124 Query: 1014 GETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAG--- 1070 +++ +G + I + +S+ V+ E T Sbjct: 1125 AQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKTISTPVITCVLENTKDVSA 1184 Query: 1071 -------------GKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISS 1117 L + +++ + + + Sbjct: 1185 ARAVKHRIEKTYIKDILDYVDDVWLQDVAKIVLRLEKDGLENLEQIGITTTDIADAIVKA 1244 Query: 1118 GDTLARIPQESGGTKD---------------------------ITGGL----PRVADL-- 1144 +I E + GL P Sbjct: 1245 KKLKLKIEPEDLKVNKNVIEVLVHNTWQDATAARKAARQRAAALEKGLTVANPGDESAAD 1304 Query: 1145 FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV 1204 F+ R +L E+ R +I + + ++ + E V Sbjct: 1305 FQLRVNFLKRMLPEVP-----IAGHPETTRAIINVDSKTSAHTVLVEGYGLRACMTTEGV 1359 Query: 1205 ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 1264 +++ + + + G+ A I E+Q V + I+ +H+E++ M Sbjct: 1360 VGTKCLTN---SVMECRDVLGIEAARTTIAFEIQQVMGD--MNIDPRHMELLADVMT--- 1411 Query: 1265 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLAT--ESFISA 1322 Y D+LGIT+ LA +S + Sbjct: 1412 -------------------------------------YKGDILGITRFGLAKMRDSVLQL 1434 Query: 1323 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRM 1370 ASF++T L +AA K D + G+ E +I+G+ + GTG R+ Sbjct: 1435 ASFEKTPDHLFDAAAGMKTDRILGVSECIIMGQTMSIGTGSFQVVRRL 1482 >UniRef50_Q84KP6 DNA-directed RNA polymerase n=6 Tax=Eukaryota RepID=Q84KP6_CYAME Length = 1819 Score = 732 bits (1889), Expect = 0.0, Method: Composition-based stats. Identities = 199/918 (21%), Positives = 345/918 (37%), Gaps = 118/918 (12%) Query: 3 DLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIF 62 D + + + A++ L SPD +R S V+ P+ G+ R+ Sbjct: 2 DYDLQTFSSAELKAVGAVQFGLLSPDELRRLSVVRVEYDVAF--ERGVPKAGGVLDPRLG 59 Query: 63 GPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFL----- 117 +++ C C GHIEL P ++ L Sbjct: 60 AIDRNFP---------------CATCEGSSIDCP---GHFGHIELVKPVFNVLMLSTVLK 101 Query: 118 --KSLPSRIGLLL--------------DMPLRDIERVLYFESYVVIEGGMTNLERQQILT 161 + + LL P++ + V + + GG + +Q++ Sbjct: 102 TLRCVCYYCSRLLVDGSDSRMLRAARIKDPVKRFQAVFQLCNGTRVCGGGADSSEEQLML 161 Query: 162 EEQYLDALEEFGDEFDAKMG------AEAIQALLKSMDLEQECEQLREELNETNSETKRK 215 L+A E G + + ++ L + D E + ++EL + + Sbjct: 162 PAAVLEARERIGKPREGCGNLQPHVTRDGLRILAEFPDAEAFAAERKQELAAERVQQIFR 221 Query: 216 KLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINR 275 + L F ++PEWM+L+VLPV PP +RP + +D DL +I Sbjct: 222 HIRDEDLELLGFHPRFSRPEWMVLSVLPVPPPHVRPSIQMDAVSRGEDDLTFKLGDIIKA 281 Query: 276 NNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRA-ITGSNKRPLKSLADMIKGK 334 NN L+RL AP ++R + +LQ V ++N G T + RPLKS+A +KGK Sbjct: 282 NNALQRLEAEGAPAHVIREQYVLLQFHVATFMNNDLPGMPRATLRSGRPLKSIAQRLKGK 341 Query: 335 QGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI 394 +GR R NL+GKRV++S R+VIT P L L + G+P+ +A+ L P + + L + Sbjct: 342 EGRVRNNLMGKRVNFSARTVITADPQLALDEVGVPRSVAMTLTYPEVVTPYNIDRLWEAV 401 Query: 395 KAAKK------MVEREEAVVWD-----------------ILDEVIREHPVLLNRAPTLHR 431 + V R + + ++ VL NR P+LHR Sbjct: 402 RNGPNAYPGALFVIRNDGKRIALQFVRRSADIVLEPGCVVERHLLNGDLVLFNRQPSLHR 461 Query: 432 LGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNIL 491 + I ++ +++ + YNADFDGD+M +HVP + E + E + LM NI+ Sbjct: 462 MSIMGHRVRILPYSTFRMNLSATSPYNADFDGDEMNLHVPQSEEVRAEIKELMAVPKNIV 521 Query: 492 SPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVR 551 SP P++ QD +LG T + + + + G A +K R Sbjct: 522 SPQANRPVMGIVQDSLLGCMLFTLRDTFLEEDTVFNLLL---HLPHFDGRIPAPAILKPR 578 Query: 552 ITEYEKDANGELVAKTS-LKDTTVGRAI-----------LWMIVPKGLPYSIVNQALGKK 599 K L+ L+ + G +I L IV++ Sbjct: 579 PLWTGKQIFSLLLPDGVNLERLSNGHPDHERTIMTPSDTRVLIQNGELITGIVDKRTVGS 638 Query: 600 AISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEK----KHEIIS 655 + +++ ++ G + T I + ++G S+GI D + + I Sbjct: 639 SAGSLIHVTWKESGPERTSQLISDIQLLINYWLMQNGMSIGIGDCIADAHTMAAINRTIQ 698 Query: 656 EAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEK 715 EA+ EV ++ Q G + + + L + +E Sbjct: 699 EAKDEVRQLIRLAQEGRLERQPG--------KTMLESFEACVNRVLNSARDKAGGFAQES 750 Query: 716 QVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSI--------------------I 755 + N+I M +G++GS + Q+ G I Sbjct: 751 LLPSNNIKRMVSAGSKGSFINVSQIVACVGQQNVEGKRIPYGFRRRTLPHFVVDDLSPEA 810 Query: 756 ETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCG 815 + ++ GL + F G R+GL DTA+KTA +GY+ RRL+ +D+ + D Sbjct: 811 RGFVENSYLRGLTPEEVFFHAMGGREGLIDTAVKTAETGYIQRRLMKAMEDIRIEYDGTV 870 Query: 816 THEGIMMTPVIEGGDVKE 833 + + + G D + Sbjct: 871 RNSLGDVMQFLYGDDAAD 888 Score = 193 bits (489), Expect = 5e-47, Method: Composition-based stats. Identities = 102/606 (16%), Positives = 188/606 (31%), Gaps = 96/606 (15%) Query: 799 RLVDVAQDLV-VTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADIL 857 RL+ + + + D T + +I+G V +L R + + Sbjct: 976 RLIQNCRSIFGIQHD---TLSDLHPRQIIQGVRV-------LLQRCVVVPGDDELSREAQ 1025 Query: 858 VPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGV 917 L L V + + + G + R A GE +G Sbjct: 1026 RNAVLLFAAHVRAELATKRVLQIHRLNSKAFAWLLGEIETRFVRARAT-----PGEMVGA 1080 Query: 918 IAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITS 977 +AAQS+GEP TQ+T+ TFH G +++ + +K ++N + + S Sbjct: 1081 VAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPR-----------LKELINVARQAKTPS 1129 Query: 978 RNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRF 1037 + + + G+ KE + + + V + DP V + + Sbjct: 1130 ----VTVYLKSGKDKELANIVQSELEQCRLRDVVESSAIYFDPDPANTVVEADREWVRDY 1185 Query: 1038 TDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPA 1097 D+ D + L ++ D+ L+ G D+ + +D A Sbjct: 1186 FDLPDEMDRPERLSPWLLRIVLSTEMMIDKRLRLSDVARRLR--AEFGGDLSVVYSDDNA 1243 Query: 1098 QYFLPGKAIVQLED-----GVQISSGDTLARIPQESGGTKDITGG------------LPR 1140 + + + E GV I G D+T G + Sbjct: 1244 EQLVMHIRMAGDEYEKGALGVPILGESERLDDTLNLLGPGDMTAGGNQSLEALDSGTVEE 1303 Query: 1141 VADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSD-----PYEEMIPKWRQ 1195 D+F R ++ GI K + + V+ + + Sbjct: 1304 QDDVFLKRIELALLEDMQLKGIPGIRKVFLRQTQRVLFDPEAGSFRSAPEWVLDTEGTAL 1363 Query: 1196 LNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEV 1255 L V V+ I ++L++ G+ A + + NE+ V G + +H+ + Sbjct: 1364 LAVLSHPDVDARRTI---SNEITEVLQVLGIEAARQALYNEMYAVLSFDGSSVGYRHLAL 1420 Query: 1256 IVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLA 1315 +V M + G + SR GI + Sbjct: 1421 LVEVMTCR-------------GMLIPVSRF----------------------GINRL--- 1442 Query: 1316 TESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAA 1375 + +F+ET +L AA G RD G+ + VI+G+ GTG Sbjct: 1443 ETGPLMRCTFEETVEILATAATFGVRDACEGVSQAVILGQRAKVGTGAFSLTLDESVLNQ 1502 Query: 1376 GEAPAA 1381 E + Sbjct: 1503 AETETS 1508 >UniRef50_Q9BMP2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Stylonychia mytilus RepID=Q9BMP2_STYMT Length = 1678 Score = 731 bits (1886), Expect = 0.0, Method: Composition-based stats. Identities = 250/1408 (17%), Positives = 488/1408 (34%), Gaps = 201/1408 (14%) Query: 105 IELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLER-QQILTEE 163 IELA P H L+ + + R + E ++ L R ++ Sbjct: 1 IELARPVYHAGLLEFIRKVLRCCCFYCSRLLADKNKLEEIKRLKSSSAKLARVLKLSDGV 60 Query: 164 QYLDALEEFGDEFDAKMGAEAIQALLKSMDLE-QECEQLREELNETNSETKRKKLTKRIK 222 + D + K ++ ++ D + + ++ L + +++T Sbjct: 61 KECDPQQNGCGHRQPKFQKTGLRIQVEYFDEQYDPGKDRKQILQADEALRVLERITDEDC 120 Query: 223 LLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL 282 L F ++PE MI+ L V PP +RP V + + DL Y++++ N L+ Sbjct: 121 ELMGFNPRISRPENMIIKNLAVAPPPVRPSVSMSNTMRSEDDLTYCYQKILQTNITLQNQ 180 Query: 283 LDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAIT-GSNKRPLKSLADMIKGKQGRFRQN 341 ++ A + + LQ V ++DN +G+ + +PLK++ ++GK+GR R N Sbjct: 181 INRGANMTTINELRTNLQYYVATVMDNEIQGQPTQKHKSGKPLKAIRARLRGKEGRLRGN 240 Query: 342 LLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLAT------TIK 395 L+GKRVD+S R+VIT P L+L Q G+P+++AL L P + + I Sbjct: 241 LMGKRVDFSARTVITPDPNLQLDQLGVPQQIALNLTVPETVTNENIDEMRKLIERGPNIW 300 Query: 396 AAKKMVEREEAVVWD-----------------ILDEVIREHPVLLNRAPTLHRLGIQAFE 438 K + R + D + + V+ NR P+LH++ + Sbjct: 301 PGAKYIIRHDDRQIDLSQMRNRSEATIHPGFKVERHLRDNDYVIFNRQPSLHKMSLMGHR 360 Query: 439 PVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEP 498 ++ +L+ V YNADFDGD+M +HVP + E E + +M N I+SP + +P Sbjct: 361 VKVLPFSTFRLNLSVTTPYNADFDGDEMNMHVPQSYETMAEIKEIMAVPNQIVSPQSNKP 420 Query: 499 IIVPSQDVVLGLYYMTRDCVNAKGE-GMVLTGPKEAERLYRSGLASLHARVKVRITEYEK 557 ++ QD +LG+ T + E M L + Y + +K R K Sbjct: 421 VMGIVQDSLLGVMLFTLKDTFIEKELVMQLLMWAK----YEDDKFPMPTILKPRPLWTGK 476 Query: 558 DANGELVAKTSLKDTTVGRAILW--------MIVPKGLPYSIVNQALGKKAISKMLNTCY 609 ++ +L+ + ++W +I L + + + M++ + Sbjct: 477 QIFSLIIPDINLQKVGEKKGLIWDSAGDLNILIRKGELICGNLTKGTIGSSSGGMIHIIW 536 Query: 610 RILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEA----EAEVAEIQ 665 + G F + ++G +VG+ D++ ++ + I ++ + +V +IQ Sbjct: 537 KEKGPYCCRDFLSNTQLIINNWLHQNGFTVGVQDIIAKKEIVQKIRDSMTKFKRDVTKIQ 596 Query: 666 EQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMM 725 ++ Q G + + + + + ++ L + S+N + M Sbjct: 597 QKAQLGKLKSQPGKSMM--------ESFEASVNQCLNKARDDCGNMALADLSSWNRLKAM 648 Query: 726 ADSGARGSAAQIRQLAGMRGLM--------------------AKPDGSIIETPITANFRE 765 +G++GS I Q+ G G + + + Sbjct: 649 VYAGSKGSNLNISQIMACVGQQNVEGKRIPFGFYKRSLPHFSKDDFGPESKGFVENCYLN 708 Query: 766 GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPV 825 GL ++F G R+GL DTA+KTA +GY+ RRL+ +D++V D + Sbjct: 709 GLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKALEDVMVKYDGTVRTSKEQIIQF 768 Query: 826 IEGGDVK--EPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVK-- 881 + G D E + D + + ++ L + + + +D Sbjct: 769 LYGEDGMAGEHIEDLTINLLKMKNTDVQNKCKFLHKPKPNMSDNELEQHLSKFMDREYAE 828 Query: 882 --VRSVVSC----DTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTF 935 +R C + + + V + I Q ++R Sbjct: 829 RIIRDPEICLQLENEYKQIIQDRDDLRFTILKSQEDAVHLAVNVPRIIWNAKEQFSIRPN 888 Query: 936 HIGGAASRAA-----AESSIQVKNKGSIKLSNVKSVVNSSG-----KLVITSRNTELKLI 985 G + + + +S K+ + S +I Sbjct: 889 QKSNLEPTYVLSRLQNLMDDLAPIPGVMIHKDPLILEANSDSTWLFKIYLRSLLNSKAVI 948 Query: 986 DEFGRTKESYKVPYGAVL------AKGDGEQVAG--GETVANWDPHTMPVITEVSGFVRF 1037 + +K+++ G + GE V +++ +G V Sbjct: 949 QQERLSKDAFNWILGEIKSRFDQALVNPGEMVGSIGAQSMGEPATQMTLNTFHFAG-VSA 1007 Query: 1038 TDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPA 1097 ++ G ++ + + + +D R A I + L A Sbjct: 1008 KNVTLGVPRLKEIINVAKNIKTPSMKIFLKDKDKQDERIATIIGGRIEHTTLCHVVKSSA 1067 Query: 1098 QYFLP-GKAIVQLEDGVQISSGDTLARIPQESGGTK----------DITGGLPRVADLFE 1146 Y+ P + + ED I + + E T D L E Sbjct: 1068 IYYDPDPERTIVREDEELIRLYNEVRLFETERRRTSPWVLRFELDNDKVQFKDLSMQLIE 1127 Query: 1147 AR------------RPKEPAILAEISGIVSFGKETKGKRRL------------------- 1175 + + E A + V+ ++ + R + Sbjct: 1128 QKINDIFRDQIDVVKSDENAEKLVLRLRVNDIEDDEEDRTVCMYLKGFQDELFNDLALKG 1187 Query: 1176 --------------VITPVDGSDPYEE---MIPKWRQLNVFEGERVERGDVISDGPEAPH 1218 I V+ + ++ + + + + + +E + Sbjct: 1188 LHEISKVTFTKYNDEIFDVETGECKQDKECWLIETDGVALQKVLGLEGINYKKTVSNDII 1247 Query: 1219 DILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGE 1278 +ILR+ G+ AV ++NE++ V G+ +N +H+ + M + Sbjct: 1248 EILRVLGIEAVRMSLINELRFVLSSYGIYVNYRHLSTLCDVMTQ---------------- 1291 Query: 1279 QVEYSRVKIANRELEANGKVGATYSRDLLGITKASLAT--ESFISAASFQETTRVLTEAA 1336 L IT+ + S + SF+ET +L EAA Sbjct: 1292 ------------------------RGILTAITRHGINRVDSSPLRKCSFEETVEILLEAA 1327 Query: 1337 VAGKRDELRGLKENVIVGRLIPAGTGYA 1364 V + D L+G+ EN+I+G+L P GTG Sbjct: 1328 VFAETDPLKGITENIIMGQLAPFGTGCF 1355 >UniRef50_C5LSN9 DNA-directed RNA polymerase n=7 Tax=Perkinsus marinus ATCC 50983 RepID=C5LSN9_9ALVE Length = 1667 Score = 720 bits (1859), Expect = 0.0, Method: Composition-based stats. Identities = 262/1602 (16%), Positives = 524/1602 (32%), Gaps = 268/1602 (16%) Query: 5 LKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGP 64 L + + ++ +++ + SP + S P R GL R+ Sbjct: 7 LNEPYSSAELKKVASVEFGILSPQQTIAQSE---------------PVRGGLSDPRLG-- 49 Query: 65 VKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRI 124 CE CG+++ GH+ELA P H FLK+ + Sbjct: 50 -------------SVDPRTPCETCGMKMRDCP---GHFGHLELAKPMYHGGFLKTTLKAL 93 Query: 125 GLLLDMPLRDI--------ERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEF 176 + + + +RVL ++ M+ + + + + + ++++ + G + Sbjct: 94 RCVCYYCSKLLADPNDLVIKRVLRVKNPKTRLQAMSVICKSRKVCDSGGMESVMKSGGKQ 153 Query: 177 D--------------------------AKMGAEAIQALLKSMDLEQECE----------- 199 +G Q ++ Sbjct: 154 QDEDIDDEDVAHTGTLVHPSTTSLVVLNMLGCGYAQPSYTVQGMQIIVSFPSSANEENED 213 Query: 200 -------QLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPL 252 + L+ + +++ + F ++P W+ILTV+PV PP +RP Sbjct: 214 GVVVDQGDTKRPLSAETAYNILSRISVPDMIAMGFTPGRSEPSWLILTVVPVPPPPVRPS 273 Query: 253 VPLDGGR-FATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGR 311 V GG A DL + ++ N LKR L+ A IV +LQ + L DN Sbjct: 274 VAFGGGTDRAEDDLTLKLQDIVKVNQMLKRQLETGAGSHIVNEIAALLQWHLYTLQDNNI 333 Query: 312 RGRAITG-SNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPK 370 G +K+ +KS+ +KGK+GR R NL+GKRVD+S R+VIT P + + Q G+PK Sbjct: 334 PGMPEAQTKSKKAIKSIRSRLKGKEGRIRGNLMGKRVDFSARTVITGDPNIDIDQVGVPK 393 Query: 371 KMALELFKPFIYGKLELRGLATTIKAA-------KKMVEREEAVV--------------- 408 +A+ L L + + K+++ + + + Sbjct: 394 SIAMNLTFAERVTPLNYAKMRELVMRGPTSWPGAKRIIRDDNSCIDLRFTKQAQDIVLRY 453 Query: 409 -WDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMA 467 W + + V+ NR P+LH++ + ++ +L+ V + YNADFDGD+M Sbjct: 454 GWRVERHMQDNDLVIFNRQPSLHKMSMMGHRAKILPFSTFRLNLSVTSPYNADFDGDEMN 513 Query: 468 VHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVL 527 +H+ + E + E R +MM ++SP P++ QD +L +T+ + + + Sbjct: 514 MHLAQSHETRAEIRNIMMVPRQVVSPQGNRPVMGIVQDSLLASTLLTKRDTFIEKDMCMQ 573 Query: 528 TGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSL------------KDTTVG 575 + G + +K R K L+ K SL D Sbjct: 574 LLMWLLPASWDGGNMPMPCILKPRPLWSGKQLFSMLLPKISLQKDAGIASKNRGDDPWFS 633 Query: 576 RAILWMIVPKG-LPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAAR 634 R+ +I+ +G + ++ + + +++ + G + T F I + Sbjct: 634 RSDCRVIIQEGEIMSGVICKKTVGASSGGLIHITWLDYGPERTKQFIGGIQRLVNFWLLH 693 Query: 635 SGASVGIDDMVIPE----KKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAAN 690 G +VG D+V + K + +++A+ +V ++ Q G + A + A N Sbjct: 694 HGFTVGCADIVANDGTMQKVADTLAQAKRDVRKLVLDAQRGRLEAQPGKSLQQSFEARVN 753 Query: 691 DRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM--- 747 R+++A D+ + N+I M DSG++G+ I Q+ G Sbjct: 754 QRLNQAREDS--------GRLAADSLDDKNNIIAMVDSGSKGNPINIAQIIACVGQQNVE 805 Query: 748 -----------------AKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKT 790 G + ++ GL ++F G R+G+ DTA KT Sbjct: 806 GKRIPTGFRDRTLPHFTKDDFGPESRGFVENSYLAGLTPQEFFFHAMGGREGIIDTACKT 865 Query: 791 ANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGD------------VKEPLRDR 838 A +GY+ RRL+ + + V D +E + + G D + Sbjct: 866 AETGYIQRRLIKSMESIKVRYDGSVRNEMDEVVQFLYGEDGMTAEYIEDQDIELMKISHE 925 Query: 839 VLGRVTAEDVLKPGTADILVPRNTLLH------------EQWCDLLEENSVDAVKVRSVV 886 L + D L P + + ++ + L+E Sbjct: 926 RLAAIAKHDYLNPDYGRGWIKDEKVRSNIRMNHEVQAVLDREFENLKEMKRLLCTKVYKD 985 Query: 887 SCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAA 946 D + + Q + + + R I G Sbjct: 986 GESRQHIPINVRRLIDQCHYLFPAEEDPDVFYPPQEVVQKVEETLDRLRVIRGLTDDQVL 1045 Query: 947 ESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKG 1006 ++ ++ L +S KL+ R + + G ++ ++ Sbjct: 1046 GWE--AQHNATVVLQAHLRYHLASRKLLERDRLGQRAVDWLLGEVEQRFE-----KSLVA 1098 Query: 1007 DGEQV--AGGETVANWDPHTMPVITEVSGF-------------------VRFTDMIDGQT 1045 GE V +++ +G Sbjct: 1099 AGESVGTIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKEIINVAKNLKTPSMTVY 1158 Query: 1046 ITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKA 1105 + + V + + G + +L + +Y+ + Sbjct: 1159 LHPDYASDDAKAKQVQSELEHTSLGKITSYTQILFDPDVRTSILEEDRQLVEEYYELPED 1218 Query: 1106 ----------IVQLEDGVQISSGDTLARIPQESGGTKDITGG-------------LPRVA 1142 +++++ + L+ +D G + R+ Sbjct: 1219 DFDSSRCSPWVLRIKLDNSVMIDKKLSTRFVGQKIVEDYGGDVQCIVSDDNSENLIVRIR 1278 Query: 1143 DLFEARRPKEPAILAEISGI------VSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQL 1196 L + ++L + + E + + SD + IP + Sbjct: 1279 LLRDTEVVLSLSLLLYNDRVFNRPRRTDYDGEEDFRLLKKVEGSLLSDLTLKGIPGVTKC 1338 Query: 1197 NVFEGERV----ERGDVISDG----PEAPHDILRLRGVHAVT--RYIVNEVQDVYRLQGV 1246 + + RV + G ++ ++ + AV R N++ ++ + G+ Sbjct: 1339 YMRQDNRVQYSSDVGTFARSREWVLDTDGCNLEQVLTMEAVDSTRTFSNDIVEILNVLGI 1398 Query: 1247 KINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDL 1306 + K + +RQ++ +G V Y + + + G L Sbjct: 1399 EACRKALLNELRQVIS------------FDGSYVNYRHMSVLCDTMCQKGH--------L 1438 Query: 1307 LGITKASLAT--ESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 + IT+ + + +SF+E +L +AA + D +RG+ EN+++G+L P GT Sbjct: 1439 MSITRHGINRVERGPLMRSSFEEMVEMLMDAACYAETDHMRGVSENIMLGQLAPIGTAEC 1498 Query: 1365 YHQDRMRRRAAGEAPAAPQVTAEDASASLAELLNAGLGGSDN 1406 + +A + G + Sbjct: 1499 ELLIDTDKLVDARPVLPEDDLVLREAAKDTGDMAVGDSTPRD 1540 >UniRef50_C5KZ53 DNA-directed RNA polymerase n=4 Tax=Perkinsus marinus ATCC 50983 RepID=C5KZ53_9ALVE Length = 1719 Score = 720 bits (1857), Expect = 0.0, Method: Composition-based stats. Identities = 254/1394 (18%), Positives = 460/1394 (32%), Gaps = 260/1394 (18%) Query: 25 ASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVI 84 S + I + EV + T K G R+ +R Sbjct: 1 MSGEEISKYGEVEVLNQGYFDPMTHKQLALGCHDPRLGA---------------MNRMSD 45 Query: 85 CEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESY 144 C+ CG + G I+L P H+ + + + LLL + RVL Sbjct: 46 CQTCGKNFRECP---GHFGSIKLVLPVFHVGYFRHV----QLLLSAICKRCGRVLLAPEK 98 Query: 145 VVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDL---------- 194 + T + + ++ L + + +A +K Sbjct: 99 RSVWLNRTRKATKDVQQQKGVFRKLVDTCKKVRQCPYCDAYNGAVKKGTRGYMTLVHELP 158 Query: 195 -----------------------EQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSG 231 + E+L + K+ + + Sbjct: 159 KDQAKVEYQQQYSDAVNNNPEIGNHLSKVAYEDLTPLHLLPLLAKMPPSDQEMLKLPP-- 216 Query: 232 NKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDII 291 +PE +++T +PV P +RP V + DL+ ++ NN +K L Sbjct: 217 -QPERLVVTHVPVSPVCIRPSVQIGDAGTQEDDLSVQTSDIVATNNNIKATLSRGGTLKQ 275 Query: 292 VRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSG 351 V + + L V ++++ G A +P++S+ +KGK+GRFR NL GKRV++SG Sbjct: 276 VAEQWQWLSAQVALMMNSEATGLAAAAPTTKPIRSICSRLKGKEGRFRGNLSGKRVNFSG 335 Query: 352 RSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAA-------------- 397 R+VI+ P L + + +P+ A++L P + + + L + Sbjct: 336 RTVISPDPNLEVTEVIIPQYSAMKLTFPEVVCRTNIDMLRDRVIRGTEGHPGAHIIRLKS 395 Query: 398 ---------KKMVERE---EAVVWD-ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEG 444 KK + E + D + + VL NR P+LH++ I A ++ Sbjct: 396 GGVKNLAFIKKQIREELAADLQYGDVVERHLQDGDVVLFNRQPSLHKMSIMAHRAKVMPW 455 Query: 445 KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQ 504 + + + VC+ YNADFDGD+M VH+P T EA+ EA ALM NN+++ NGEPI+ +Q Sbjct: 456 RTFRFNECVCSPYNADFDGDEMNVHLPQTQEARAEALALMGVQNNLITSKNGEPIVAATQ 515 Query: 505 DVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANG--- 561 D + + +T+ + + + + +K K Sbjct: 516 DFLTSAWLLTQRDTFLTKDKIANIAMY-FGKAAETLELPPPTIMKPIQLWTGKQLISLML 574 Query: 562 -------------ELVAKTSLKDTTVGRAILWMI-VPKGLPYSIVNQALGKKAISKMLNT 607 S D R ++I L + + + + + Sbjct: 575 RPSHKSTVLVNLEMAEKNYSHGDPYFCRNDGYVIFYNSELIAGNLGKKILGGSKPGLTFV 634 Query: 608 CYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEK----KHEIISEAEAEVAE 663 R ++ + G S GIDD+ + K E ++E A V E Sbjct: 635 LIRDNSPAVAAACLGRLSKLSARWLGTRGMSFGIDDVTASPEIEAFKKEQVAEKYAYVDE 694 Query: 664 IQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIY 723 E+++ G + N A + + L + D E+ FN Sbjct: 695 KIEEYRKGKLPLKPGCN--------AEQTLEAVINGELGKIRNVVGDRLEKVLPRFNKPR 746 Query: 724 MMADSGARGSAAQIRQLAGMRGLMAKPDGSI--------------------IETPITANF 763 +MA G++GS + Q+ G I + +F Sbjct: 747 IMAQCGSKGSPINLSQMIVCLGQQNVGGQRIQNGFVNRTLPHFKKFSKTPQSRGFVEDSF 806 Query: 764 REGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMT 823 GLN +YF T G R+GL DTA+KTA +GY+ R+L+ +DL + D + Sbjct: 807 FSGLNPFEYFFHTMGGREGLVDTAVKTAETGYMQRKLIKALEDLGLKYDMTVRTSDGTVV 866 Query: 824 PVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNT-----------LLHEQWCDLL 872 + G D P + + ++ +T L + + Sbjct: 867 QFVFGDDGLNPAMMEGKSKPLNFEHTMNHVQHVVEKHHTREVALLPSEYRALTNELIQQV 926 Query: 873 EENSVDAVKVRSVVSCDTDFGVCAHCYGR------------------------------- 901 ++ + S+ + + G Sbjct: 927 DQEVKSICPLTSLDTSRFTGDLTEFIGGMASEMEKERVKVGLPVDDRVRDDPRESTLCDL 986 Query: 902 -----------------DLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRA 944 R ++ GEA+G +AQSIGEP TQ+T++TFH G AS Sbjct: 987 SCALTEAQLRSFMTTCARKYRRALMEPGEAVGATSAQSIGEPATQMTLKTFHFAGVASMN 1046 Query: 945 AAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLA 1004 + +K ++N++ + + +L E +V A + Sbjct: 1047 VTLGVPR-----------IKEIINAAKHISTPIISCKL----------EQDRVEAAAFMV 1085 Query: 1005 KGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDS 1064 K ++ + + + V V + G+T+ R +LT + + Sbjct: 1086 KSKIQR----TLLGDICEYIKQVYEPSG--VYLIVKLCGETLRRMQLDLT------MDEL 1133 Query: 1065 AERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARI 1124 E L LKI I P A+ S G TL Sbjct: 1134 KEALCAKGALPGGLKIRPE-----CIESRGKLKLAIRPAGAVD--------SRGRTLPPN 1180 Query: 1125 PQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSD 1184 P+ FE + + A + G+ + K Sbjct: 1181 PETLW---------------FEVQALRNALPQAPVKGLKQCSRVVVNKEEA--KDGSKDT 1223 Query: 1185 PYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQ 1244 Y ++ + +V E V + ++ + G+ A + I++E+ + + Sbjct: 1224 IYSLLVEGYGLQDVMGIEGVVAEKSV---SNHVLEVQSVLGIEAARKSIMSEIDVIMKHF 1280 Query: 1245 GVKINDKHIEVIVR 1258 G+ ++ +HI+++ Sbjct: 1281 GMSVDYRHIQMLGD 1294 >UniRef50_Q8SRM3 DNA-directed RNA polymerase n=2 Tax=Apansporoblastina RepID=Q8SRM3_ENCCU Length = 1349 Score = 716 bits (1847), Expect = 0.0, Method: Composition-based stats. Identities = 257/1463 (17%), Positives = 487/1463 (33%), Gaps = 253/1463 (17%) Query: 1 MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60 ++ ++K ++ I +L SP I S E+ + + T P +G R Sbjct: 31 LQPMIKKVEEDEIDIRIRRISFSLLSPQEISDLSVHEISSKDLYDISTRAPLPNGPLDLR 90 Query: 61 IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120 + + ++ C CG + G + L P ++ +K+ Sbjct: 91 LG---------------VGNKKDKCATCGEGLATCI---GHFGEVRLVLPVFNVGLIKNT 132 Query: 121 PSRIGLLLDMPLRDIERVLYFESYVVIE-----GGMTNLERQQILTEEQYLDALEEFGDE 175 S + L + + G T L ++I+ E + ++ Sbjct: 133 ISTLNCLCKSCGSILLNEKKKIYFKKKLRESSGGNDTKLILRRIVAECKKVNVCFVCSFR 192 Query: 176 FDAKMGAEAIQALLKSMDLEQECEQLR------------EELNETNSETKRKKLTKRIKL 223 + + + DLE+ + EE+N + + + Sbjct: 193 NGQIKKTFGFRIVHEVEDLEKRKKDRGSKGSDGVHSSCCEEINPLVALNVFNMMKEDDYE 252 Query: 224 LEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLL 283 L F++S ++ +I+ + V P +RP V +D D+ +++ N L+ + Sbjct: 253 LLGFLESPSR---LIIQNVIVPPSCIRPSVSMDDEGTNEDDITIKISEIVHTNKVLREGI 309 Query: 284 DLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLL 343 + P ++ + LQ L+++ I G P++ + +KGK GRFR NL Sbjct: 310 EKGNPLNLINEDWDHLQLQCALLINSELPQIGIPGQ---PVRGIVQRLKGKNGRFRCNLS 366 Query: 344 GKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVER 403 GKRVD+SGR+VI+ P L + + G+P++MA L +L R L + + Sbjct: 367 GKRVDFSGRTVISPDPNLSIEEVGIPERMAKILTISERVTRLNRRKLQALVLNGPENYPG 426 Query: 404 EEAVVWD--------------------ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIE 443 VV + + ++ VL NR P+LHR+ I + + + Sbjct: 427 ANYVVGEKFKRFLMYGKRDIELKYGEVVERHLMDGDMVLFNRQPSLHRMSIMSHKVRVHR 486 Query: 444 GKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPS 503 K ++ + VC YNADFDGD+M VHVP T +A+ EA LM +NNI++P +GEPI+ + Sbjct: 487 NKTLRFNECVCTPYNADFDGDEMNVHVPQTEKARAEASVLMSVSNNIVTPRHGEPIVAAT 546 Query: 504 QDVVLGLYYMT-RDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGE 562 QD + GLY +T +D + L + + A K K Sbjct: 547 QDFITGLYLITGKDTFFDRERFGQLVSYFS-----EARVGVKPAIRKPVELFTGKQLIEV 601 Query: 563 LVAKTSLKDTTVGRAILWM-----------------------IVPKGLPYSIVNQALGKK 599 L+ + M I+ + +++++ Sbjct: 602 LIKDSFTASIERNAVTGNMAVSLVGKNRSFKTHDDPNDGSVAILDNSYYFGRLDKSIVGG 661 Query: 600 AIS--KMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDM----VIPEKKHEI 653 ++ ++ V + I Y +G S+G+DD+ ++ +KK + Sbjct: 662 ENKRDSLIYAIMKV-SSMAAVRAMNSITKLCSRYLGETGFSIGLDDVQPGPILRQKKEMV 720 Query: 654 ISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQE 713 + AE ++ E I L Sbjct: 721 VRRGYAECESKILEYSKKPEANEEMLEMEIS--------------SILNRIREECGSICI 766 Query: 714 EKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSI------------------- 754 ++ NS +M G++GS + Q+ G I Sbjct: 767 KELGIRNSPNIMQACGSKGSKINVSQMVACVGQQIVSGTRIPNGMDERCLPHFKRGSRTP 826 Query: 755 -IETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDD 813 + + +F +GL ++F R+GL DTA+KTA +GY+ RRL+ +DL + D Sbjct: 827 ESKGFVLNSFFDGLTSPEFFFHAVSGREGLVDTAVKTAETGYMQRRLMKALEDLSIQYDG 886 Query: 814 CGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADIL-----------VPRNT 862 + + + G D +P + E V + L + Sbjct: 887 SVRNSNMEVVQFAYGEDQIDPAMSEGDESINLEQVFLRAKSSFLHSLGPSPDLYSSWLDE 946 Query: 863 LLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQS 922 L + + + + G G ++ Sbjct: 947 HGTIDILRRLTPKGYPFEHIANRRFVGSLLRFMESKHEDKFCFG-----GTFYRYFLSKD 1001 Query: 923 IGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTEL 982 E + + + +I ++ G + +G + Sbjct: 1002 FIETFFSMVSQ-KMMNLIVEPGTTVGAIAGQSIGEPGTQMTLKTFHFAGVASMNITLGVP 1060 Query: 983 KLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMID 1042 +L + A L DPH + + G + Sbjct: 1061 RLKEIINAVCNISTPIINAEL----------------DDPHDLFRTEVIKGRLD------ 1098 Query: 1043 GQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLP 1102 +S V S ++ +++ + + + + L Sbjct: 1099 ------------RISLKDVCSSLTEVISKDEIFLDIRVDLESLSRLKLNLDIHKIEKLLN 1146 Query: 1103 GKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGI 1162 V++ ++ I + + + F +R K+ + +I G Sbjct: 1147 NHDQVRV-----VNENTLRVSIKKITDQSY------------FNLQRIKKKLLNTKICG- 1188 Query: 1163 VSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILR 1222 R++I G Y +I LNV + V+ I+ + ++ Sbjct: 1189 ------APQVNRVIINSSRG--LYSLVIEGRGLLNVINIDGVKA---INTTSNSITEVEE 1237 Query: 1223 LRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEY 1282 + G+ A I++E++ G+KI+ +HI ++ M Sbjct: 1238 VLGIEAARAQIIHEIEYTISNHGIKIDPRHIMLLADTMT--------------------- 1276 Query: 1283 SRVKIANRELEANGKVGATYSRDLLGITKASLAT--ESFISAASFQETTRVLTEAAVAGK 1340 Y ++ GIT+ ++ S + ASF++T+ L EAAV K Sbjct: 1277 -------------------YRGEVFGITRFGISKMSRSTLMLASFEQTSDYLFEAAVQSK 1317 Query: 1341 RDELRGLKENVIVGRLIPAGTGY 1363 DE+ G+ E++I+G I GTG Sbjct: 1318 SDEICGVSESIILGIPICIGTGS 1340 >UniRef50_Q3SE62 DNA-directed RNA polymerase n=3 Tax=Paramecium tetraurelia RepID=Q3SE62_PARTE Length = 1368 Score = 715 bits (1844), Expect = 0.0, Method: Composition-based stats. Identities = 243/1480 (16%), Positives = 488/1480 (32%), Gaps = 239/1480 (16%) Query: 15 EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74 + ++ ++ SP + + ++ + + + T K G R+ ++D +C Sbjct: 10 RKIGGLQYSILSPQDAINLAEVKIFRDKNYDKMTGKNIEHGPLDLRMGQSLRDTQCSSCT 69 Query: 75 YKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMP--L 132 G+I L P H+ F + + L + Sbjct: 70 LLN-------------------ECPGHFGYIPLQLPIYHLGFFTHVVKCLKCLCYKCGQV 110 Query: 133 RDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSM 192 R + + ++ T Q+ ++ L ++ E I K Sbjct: 111 RLTPDEINQLTQKMVHCIQTRSYNAQLKVFKKVLKKCR--SNKQCPHCYCEQIGEAKKLA 168 Query: 193 DLEQECEQLRE-ELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRP 251 + L ++N + + + K+ + L N ++ +++P P ++RP Sbjct: 169 KGDAGKIILDTMDINALYAWNQFSNIPKQHQFLFCINPFLNDLSDLLTSIIPAPPNNIRP 228 Query: 252 LVPLDGGRFA-TSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNG 310 L A DL + ++ N+ L++ + + + + + Q ++ Sbjct: 229 SKMLSNTTKADEDDLTMKLKTILYHNDLLQKQIKEGKDGMSILKTQFLTQAHYFHYFNSE 288 Query: 311 RRGRAI--TGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGL 368 + K ++ + +KGK+GR R NL GKR +++ RSVI+ P L + Q + Sbjct: 289 TPRLPQFSSKDGKVDIRGIYQRLKGKRGRLRGNLSGKRAEFTARSVISPDPNLAIDQVTI 348 Query: 369 PKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREE----------------------A 406 P+ +A L P L ++ + ++ + + Sbjct: 349 PQHIACILTVPETVTALNIKKMRDYVQNGPSIYPGAKFVKLGGVNYNLQFARRAHLAYKL 408 Query: 407 VVWDIL-DEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQ 465 + D++ ++ E V+ NR P+LHR+ + AF + + ++ + VC +NADFDGD+ Sbjct: 409 KIGDVVDRHLLSEDIVIFNRQPSLHRISMMAFRARVDKWHTLRFNECVCTPFNADFDGDE 468 Query: 466 MAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVN-AKGEG 524 M +H+P T EA+ EA LM N+ + +GE ++ QD + + +T V ++ + Sbjct: 469 MNIHLPQTYEARSEALILMDVKKNLKTIKSGESLVCLLQDFLTTAWLITNKDVFYSREQF 528 Query: 525 MVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILW---- 580 M A + L A I + ++ G+ V L R +L Sbjct: 529 MQFC----AAFSDSNEQIDLPA---PTILKPKQLWTGKQVINALLVPNRKTRLVLNLEAK 581 Query: 581 ---------------------MIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVI 619 + L + + + + + R + Sbjct: 582 ESNAFKGKLDYLWMDPGDGYVVFDKCELVCGNIGKKVLGASKLGLFYALIRDNSTQIAAS 641 Query: 620 FADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERY 679 + + + G ++GI D++ P+ E I ++ + + +Q L+ A Sbjct: 642 VMQRFAKLSSRWISHYGMTIGIGDVMAPKSLIEQIHQSTEQSYLQCKHYQRSLIDADPGL 701 Query: 680 NKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQ 739 + + L +E+ S N + +M GA+GS + Q Sbjct: 702 --------TVEQTLEAKVNKTLSDVREQVGSKCQEQLKSDNKVLIMYLCGAKGSNVNVAQ 753 Query: 740 LAGMRGLMAKPDGSI----------------------------IETPITANFREGLNVLQ 771 + G G + + + +F G++ ++ Sbjct: 754 MIGCVGQQVISGKRVPEGFTGRTLPHFKDCGDRYPNLDILHPKAKGFVKNSFYTGMDAIE 813 Query: 772 YFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEG-IMMTPVIEGGD 830 ++ R+GL DTA+KTA +GY+ RRLV + +DL + D + G D Sbjct: 814 FYFHNMAGREGLTDTAVKTATTGYMQRRLVKMLEDLHIAYDLTVRSCDTKEIVQFRYGED 873 Query: 831 VKEPLR----------DRVLGR---VTAEDVLKPGTADILVPRNT---LLHEQWCDLLEE 874 +PL +L V ++ + +L+ + ++ E+ LE Sbjct: 874 GLDPLAVEDANEVIKLQNLLTNSFTVLRKNQILLNKEHMLIKLDELFMIIEERHKKFLEN 933 Query: 875 NS--VDAVKVRSVVSCDTDFGVCAHCY-------GRDLARGHIINKGEAIGVIAAQSIGE 925 + K R + + + ++ G ++G I +QSIGE Sbjct: 934 YEATYEKEKKRVQALFKSTNQQVSEKQLQWFIRSWMERFLTMVMAPGTSVGPITSQSIGE 993 Query: 926 PGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLI 985 P TQ+T++TFH G A + + + + ++N+S ++ N +L Sbjct: 994 PATQMTLKTFHSAGVAGMSITQGVPR-----------LNEIINASKEIKTPQINVKLINR 1042 Query: 986 DEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQT 1045 K + G+ + Sbjct: 1043 QVMDHAK----------------QFAKSGDPQYEY--------------------AHRAV 1066 Query: 1046 ITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKA 1105 I + + ++ A D + ++ P Sbjct: 1067 IHSAQQAQDVNIQIEQTKLMQILKKMDEIYTADNCYIELELDCHCL-ARLKLEFVTPKYV 1125 Query: 1106 IVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSF 1165 + +++S D + K + LF + + + I G + Sbjct: 1126 CALILKELKLSPDDVKYDLKIIRITVKKSSKKKQSENLLFLIKELQRKLLRLHIYGCANI 1185 Query: 1166 GKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRG 1225 + V D + E + E R++ D +I G Sbjct: 1186 KQTVIQ----VTDKDDKENVKGEARLFASGIGFKEILRLDNIDWKRTVSNHIMEIQSALG 1241 Query: 1226 VHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRV 1285 + A + IVNEV + + I+ +HI ++ M K I Sbjct: 1242 IEAARQSIVNEVYTTMQSHSISIDIRHILLLAELMTFKGRI------------------- 1282 Query: 1286 KIANRELEANGKVGATYSRDLLGITKASLA--TESFISAASFQETTRVLTEAAVAGKRDE 1343 LG T+ + S + ASF++T V AA+ GK+D Sbjct: 1283 ---------------------LGFTRQGIDQLKNSALMLASFEKTMDVFFNAAIQGKQDS 1321 Query: 1344 LRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQ 1383 + G + VI+G+ +P GTG ++ E+ Q Sbjct: 1322 MNGASQRVIIGQNVPQGTGMFDLMFPVKENTILESTINQQ 1361 >UniRef50_C4QF52 DNA-directed RNA polymerase n=2 Tax=Schistosoma mansoni RepID=C4QF52_SCHMA Length = 1342 Score = 713 bits (1839), Expect = 0.0, Method: Composition-based stats. Identities = 251/1475 (17%), Positives = 456/1475 (30%), Gaps = 313/1475 (21%) Query: 4 LLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETIN--YRTFKPERDGLFCARI 61 + K + IK L S ++ S +V K + GL R+ Sbjct: 1 MPSLYKPPDLPRIVENIKFQLCSEGDLKRLSHVQVLKCLLYAEGQSNRRALDYGLLDPRL 60 Query: 62 FGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLP 121 R +C CG++ G+ +L +P H+ + Sbjct: 61 GA---------------NKRDELCATCGLDYQTCI---GHWGYFDLPTPIYHVGYT---- 98 Query: 122 SRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMG 181 I +L + RVL E + + ++Q A+ + Sbjct: 99 WHIVKILQTICKTCSRVLLPEQQRARFSISCSNPSLDYVHKKQLRKAIHKLSSRVHVCPF 158 Query: 182 AEAIQALLKS--------MDLEQECEQLREE-------------------------LNET 208 A+ ++ D+ + + +E + Sbjct: 159 CSALNGVVTKGTSLSYVVHDIFRHAKAKVDEYVNEFAKVITENTDLAPVVRKGLEIIRPG 218 Query: 209 NSETKRKKLTKRIKLLEAF---VQSGNKPEWMILTVLPVLPPDLRPLVPLDGGR-FATSD 264 + K+ + L Q P +I+ +PV P +RP V + D Sbjct: 219 KALQLFSKIPEEDLPLLLMPFDSQWTTHPRNLIVQRVPVCPSAIRPSVVSEVRSGTNEDD 278 Query: 265 LNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPL 324 L +Y+ ++ + ++ D+ D I L L+++ + G + + + Sbjct: 279 LTQMYQWILAQAATIEE--DIGEADQIACL--DNLHAEFARLINSQQSGLPPVQDH-KFM 333 Query: 325 KSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGK 384 + L + GK GRFR +LLGKR +++ R+VI+ P +R+ + +P A L P Sbjct: 334 RGLLQRLAGKHGRFRGSLLGKRTNFTARTVISPDPNMRIDEVCIPVHCAKLLTYPERVTD 393 Query: 385 LELRGLATTIKAAKKMVEREEAVVWD---------------------------------- 410 L L + + V + Sbjct: 394 FNLNFLRSLVLNGPNNYPGAMFVSYKLRGERKRQAEASGNSDVVKRFLASERAREDVAKY 453 Query: 411 ------ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGD 464 + ++ + VL NR P+LHR+ IQAF V+ + + +P C +NADFDGD Sbjct: 454 LQSGDIVERHLLDDDIVLFNRQPSLHRVSIQAFRAVVKPFRTFRFNPCCCTPFNADFDGD 513 Query: 465 QMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEG 524 +M +H+P T A+ EA+ LM+S NI+SP NGEP+I P QD++ + +T V + Sbjct: 514 EMNIHLPQTEAARAEAKHLMLSLKNIVSPKNGEPLISPIQDLITATHLLTLKDVFLNRDQ 573 Query: 525 MVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDT------------ 572 A+ L + L L + K I G+ + L Sbjct: 574 ---ACTLAAQLLAGNHLGRLLSLPKPAILWPVALWTGKQIFGLILSPHPSTGIKVNLRVP 630 Query: 573 -----------TVGRAILWMIVPKGLPYSIVNQA-LGKKAISKMLNTCYRILGLKPTVIF 620 +I L V++ LG + S + T R G + Sbjct: 631 TKSMYSSKGQEMCPNDGFVLIQNSELLAGCVDKKLLGGGSKSSIFYTLLRDYGREACADA 690 Query: 621 ADQIMYTGFAYAARSGASVGIDDMVIPE----KKHEIISEAEAEVAEIQEQFQSGLVTAG 676 ++ + A G S+G+ +++ K +IS A + Q+Q + Sbjct: 691 MWRLGRIALFFLAHRGFSIGLGEVMPSSDLVASKTALISRGFATCDDYINQYQMNTLVCN 750 Query: 677 ERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQ 736 + D + + L + + NS +MA SG++GS Sbjct: 751 PGCSME--------DTLESNISQELSKIRDEAGAACKRQLHPSNSPLVMAQSGSKGSFLN 802 Query: 737 IRQLAGMRGLMAKPDGS--------------------IIETPITANFREGLNVLQYFIST 776 I Q+ G + + +F GL+ ++F Sbjct: 803 ISQMIACVGQQVIGGKRVPDVINGRSLVHFPPGSRTPEAKGFVGNSFYSGLSPSEFFFHA 862 Query: 777 HGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLR 836 R+GL DTA+KTA++GY+ RRLV +DL V DD + G D +PL Sbjct: 863 MSGREGLTDTAVKTADTGYMQRRLVKFLEDLAVAYDDTVRDSRGDIIQFRYGSDGLDPLE 922 Query: 837 DRVLGRVTAEDVLKPGTADILVPRNT----------------------LLHEQWCDLLEE 874 + L + C ++E Sbjct: 923 METDTFPVNFVKEMEHIRTSYDCPHEVGMSAEELELAVEVVFQLDAFRHLDSRLCSAIKE 982 Query: 875 NSVDAVKVRSVVSCDTDFGVCAHCYGRDL----------------------ARGHIINKG 912 ++V H G +L +I G Sbjct: 983 FIHNSVC---PRIRKWQEWCTEHANGSNLINQNERLTRTQLRIFLTHVKEKYEKALIEPG 1039 Query: 913 EAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGK 972 A+G + QS+GEP TQ+T++TFH G AS + ++ + +VN++ + Sbjct: 1040 TAVGALCGQSVGEPATQMTLKTFHFAGVASMNITQGVPRM-----------REIVNAAAR 1088 Query: 973 LVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVS 1032 + LI S + L+ +A+ +T Sbjct: 1089 IKTP-------LICVTLTDPFSASLARQVKLSIEP-------TRLADISLSLSQCLTPEY 1134 Query: 1033 GFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPG 1092 +V T + + + + + + N + Sbjct: 1135 VYVAIKLDKKRMDRRGITTPQVATAIQTTKLKKTKLSRVTYSKDYIFVYPVDLNALETVV 1194 Query: 1093 TDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKE 1152 + I G+P V+ + Sbjct: 1195 KLVE-----------------------------------DVIVKGIPGVSRV-------- 1211 Query: 1153 PAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISD 1212 ++ + G E R ++ P ++ Sbjct: 1212 --VIQQDKGEHIIFVEGARLREVMCIPGVVAERTR------------------------- 1244 Query: 1213 GPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRK-----ATIV 1267 ++ ++ GV A R +++E+ V GV++N +H+ ++ M K IV Sbjct: 1245 -SNNILEVEQVLGVEAARRVVIDELLAVMEGHGVEVNVRHVMLLADVMTNKWSTMDQCIV 1303 Query: 1268 NAGSSDFLEGEQVEYSRVKIANRELEANGKVGATY 1302 + +L + E ++ I N K Sbjct: 1304 DDKIEMYLPYDVNENKKLTIENAAKNDKNKRLILN 1338 >UniRef50_Q4SF83 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tetraodon nigroviridis RepID=Q4SF83_TETNG Length = 1745 Score = 705 bits (1820), Expect = 0.0, Method: Composition-based stats. Identities = 251/1456 (17%), Positives = 466/1456 (32%), Gaps = 300/1456 (20%) Query: 179 KMGAEAIQALLKSMDLEQECEQLREE-------LNETNSETKRKKLTKRIKLLEAFVQSG 231 G + ++L E + + E+ L+ K+++ ++ Sbjct: 4 GCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDMILGMDPKF 63 Query: 232 NKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDII 291 +PEWMI+TVLPV P +RP V + G DL ++ NN+L+R A + Sbjct: 64 ARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV 123 Query: 292 VRNEKRMLQEAVDALLDNGRRGRAIT-GSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYS 350 + + ++LQ V ++DN G + RPLKS+ +KGK+GR R NL+GKRVD+S Sbjct: 124 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFS 183 Query: 351 GRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIK------AAKKMVERE 404 R+VIT P L++ Q G+P+ +A + P I + L ++ K + R+ Sbjct: 184 ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD 243 Query: 405 EAVVWDI--------------------LDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEG 444 D+ + V+ NR PTLH++ + ++ Sbjct: 244 NGDRIDLRFHPKPSDLHLQIGYKASSKALHMCDGDIVIFNRQPTLHKMSMMGHRVRILPW 303 Query: 445 KAIQLHP--------------------------------------------LVCAAYNAD 460 +L+ V YNAD Sbjct: 304 STFRLNLRYRLKQGRADAKAQGKPLIEFPVCRINALAQSSRYCMYFPDFCFSVTTPYNAD 363 Query: 461 FDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNA 520 FDGD+M +H+P +LE + E + L M I++P + P++ QD + + T+ V Sbjct: 364 FDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFL 423 Query: 521 -KGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAI- 578 +GE M L G A +K R K ++ T Sbjct: 424 DRGEVMNLLMF----LSTWDGKMPQPAILKPRALWTGKQIFSLIIPGHINVIRTHSTHPD 479 Query: 579 ---------------LWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQ 623 ++ L I+ + + +++ Y +G T +F Sbjct: 480 DEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSN 539 Query: 624 IMYTGFAYAARSGASVGIDDMVIPEK----KHEIISEAEAEVAEIQEQFQSGLVTAGERY 679 I + G S+GI D + K I +A+ +V E+ E+ + + Sbjct: 540 IQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHNNELEPTPG- 598 Query: 680 NKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQ 739 + L ++ +N+ M +G++GS I Q Sbjct: 599 -------NTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQ 651 Query: 740 LAGMRGLM--------------------AKPDGSIIETPITANFREGLNVLQYFISTHGA 779 + + G G + ++ GL ++F G Sbjct: 652 VIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGG 711 Query: 780 RKGLADTALKTANSG------YLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVK- 832 R+GL DTA+KTA +G Y+ RRL+ + ++V D + + + G D Sbjct: 712 REGLIDTAVKTAETGKFVCRRYIQRRLIKSMESVMVKYDGTVRNSINQVVQLRYGEDGLA 771 Query: 833 -------------------------EPLRDRVLGRVTAEDVLKPGTAD-----ILVPRNT 862 + +R L R EDV+K + L Sbjct: 772 GENVEFQNLATLKPSHRAFEKKFKFDCTNERALRRTLQEDVVKDVMTNAHVQSSLEREFE 831 Query: 863 LLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAI-GVIAAQ 921 + E L KV + + + ++ + G++++ Sbjct: 832 KMKEDREILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINTRTPTDLSPLRVVEGILSSV 891 Query: 922 SIGE-----PGTQLTMRTF----HIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGK 972 S+ E P T H+ G + + + N + Sbjct: 892 SLNEICCSPPFTLNISIADIQFEHVFGLSGTHELSKKLVIVNGDDPLSRQAQQNATLLFN 951 Query: 973 LVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGD------GEQV--AGGETVANWDPHT 1024 + + S ++ +EF + E++ G + K + GE V +++ Sbjct: 952 IHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAHPGEMVGALAAQSLGEPATQM 1011 Query: 1025 MPVITEVSGF---------------------------------VRFTDMIDGQTITRQTD 1051 +G D + I + + Sbjct: 1012 TLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFLLGQAARDAERAKDILCRLE 1071 Query: 1052 ELTGLS----------------------SLVVLDSAERTAGGKDLRPALKIVDAQGNDVL 1089 T V + + P L ++ + Sbjct: 1072 HTTLRKVTANTAIYYDPNPQNTVVEEDQEWVNVYYEMPDFDVTRISPWLLRIELDRKHMT 1131 Query: 1090 IPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIP-------QESGGTKDIT-GGLPRV 1141 TD A I+ ++ + + ++ ES D+T G+ ++ Sbjct: 1132 DSQTDHGADCREDQCRIMNSDEYKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQI 1191 Query: 1142 ADLFE--ARRPKEPAILAEISGIVS----FGKETKGKRRLVITPVDGSDPYEEMIPKWRQ 1195 + ++ + + I+ G + ET G + + DP + Sbjct: 1192 SKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVE 1251 Query: 1196 LN--VFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHI 1253 + + + + DG P ++ G+ AV + + E+ V G +N +H+ Sbjct: 1252 IFTVIQSLSCLIGLRELFDGDRVPSSGFQVLGIEAVRKALERELYHVISFDGSYVNYRHL 1311 Query: 1254 EVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKAS 1313 ++ M L+ IT+ Sbjct: 1312 ALLCDTMT----------------------------------------CRGHLMAITRHG 1331 Query: 1314 LAT--ESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA-YHQDRM 1370 + + SF+ET VL EA+ G+ D ++G+ EN+++G+L PAGTG D Sbjct: 1332 INRQDTGPLMKCSFEETVDVLMEASSHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAE 1391 Query: 1371 RRRAAGEAPAAPQVTA 1386 + + E P + Sbjct: 1392 KCKYGMEIPTNIPGIS 1407 >UniRef50_B5Y993 DNA-directed RNA polymerase n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y993_COPPD Length = 2037 Score = 702 bits (1812), Expect = 0.0, Method: Composition-based stats. Identities = 363/1000 (36%), Positives = 517/1000 (51%), Gaps = 107/1000 (10%) Query: 177 DAKMGAEAIQALLKS----MDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGN 232 G EAI+ LL+ L+ + L E+L E S K++KLTKR++++ F++S Sbjct: 690 KTLTGGEAIKELLEKNYSPDKLQDWVDYLVEQLEEA-SGQKKQKLTKRLQVVNGFLRSKT 748 Query: 233 KPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIV 292 P WM+L VLPVLPPDLRPL+ R +SDLN+LYRR+INRN RLKRL + APD+I+ Sbjct: 749 NPSWMVLEVLPVLPPDLRPLIFDKNERAKSSDLNELYRRIINRNLRLKRLREQKAPDLII 808 Query: 293 RNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGR 352 RNE R+LQEAV+AL+DN R+ + + S R LKSL D + GKQGRFRQNLLGKRVDYSGR Sbjct: 809 RNEMRLLQEAVEALIDNSRKDKPVKDSRGRQLKSLTDKLSGKQGRFRQNLLGKRVDYSGR 868 Query: 353 SVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDIL 412 SVI +GP L+L+Q G+P+ MA ELFKP + G+L+ R +A+T K AKKM+E + +W +L Sbjct: 869 SVIVIGPDLKLNQTGIPRIMAAELFKPMLIGELQRREIASTAKQAKKMIESYDPRIWPVL 928 Query: 413 DEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPL 472 ++++ + VLLNRAPTLHR IQAFEPVL++ KAI + P++C +NADFDGDQMAVHVPL Sbjct: 929 ADIVKGYYVLLNRAPTLHRPSIQAFEPVLVDSKAISVPPMICPPFNADFDGDQMAVHVPL 988 Query: 473 TLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVN-AKGEGMVLTGPK 531 + +A EAR LM S NILSPA+GEP+ P+QD+V+G Y++T D KG+G + Sbjct: 989 SNQALAEARFLMSSHLNILSPAHGEPLAAPTQDLVIGPYFLTADIEGDFKGDGTIFYSAH 1048 Query: 532 EAERLYRSGLASLHARVKVRITEYEK---DANGELVAKTSLKDTTVGRAILWMIVPKGLP 588 E E LHA + + + T +TTVGR I + + L Sbjct: 1049 EVEMALEDKKVDLHAHIWYVPLLKGDGSVQGTSQGIDTTKKGNTTVGRVIFNHFINQRLA 1108 Query: 589 YS------IVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGID 642 + N + KK + +N LGL ++ D I GF YA SG ++ Sbjct: 1109 ENGLQALPFANDTMTKKVLYSYINDAIDRLGLSDSIYVLDAIKELGFKYATFSGLTISAL 1168 Query: 643 DMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQ 702 D+ + K +++ EA ++ I++++ G +T ERY K+++IW +RV+ ++ D + Sbjct: 1169 DLSVVPSKDKLVEEAREKIERIEQEYNFGRLTVEERYEKIVNIWRDVVERVTDSLTDYFK 1228 Query: 703 TETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITAN 762 +YMM SGARG+ Q+RQL G+RGLMA P G IIE PI + Sbjct: 1229 ETD---------------HLYMMFTSGARGNKDQVRQLVGLRGLMADPTGKIIEYPIIDS 1273 Query: 763 FREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMM 822 EGL + +YF+STHGARKG ADTALKTA++GYLTRRLVDV Q + +TEDD + Sbjct: 1274 LLEGLTIQEYFVSTHGARKGQADTALKTADAGYLTRRLVDVVQSVTITEDD------HSV 1327 Query: 823 TPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKV 882 V G E + ++GR EDV PG + +V R ++ + L+ E ++ + Sbjct: 1328 VSV--GPKTFENVAAALVGRFAEEDVTLPGFDEPVVRRGQVIGVEEAQLIAEAGIEIL-- 1383 Query: 883 RSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAAS 942 RDL + + + F G + Sbjct: 1384 ----------------VRRDLEMVRVSDLLDP------------------DNFVYGLNHT 1409 Query: 943 RAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAV 1002 ++ G L V S + +L + E G Sbjct: 1410 NFVLPGEMR---IGDEILPKGTKVTPSLAYKLKELGVEDLVVKREEG------------- 1453 Query: 1003 LAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQT---ITRQTDELTGLSSL 1059 L D E G +A + + + G D++D T I R E+T + Sbjct: 1454 LLVRDLEA-TDGSVIAE-------LGSRIWGRFAAEDIVDPNTGEVIVRAGQEITAQDAQ 1505 Query: 1060 VVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI-SSG 1118 + + + + + G V G D+ + + V + I G Sbjct: 1506 RIDRAD---VKSVRIHSPITCLSEDGVCVTCYGRDLSRRRLVEKGESVGVVAAQSIGEPG 1562 Query: 1119 DTLARIPQESGGT--KDITGGLPRVADLFEARRPKEPAIL 1156 L +GG +DITGGLPRV +LFEAR+ + Sbjct: 1563 TQLTLRTFHTGGVAGEDITGGLPRVEELFEARKKNALTDI 1602 Score = 285 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 168/659 (25%), Positives = 276/659 (41%), Gaps = 60/659 (9%) Query: 753 SIIETPITANFREGLNVLQYFI-STHGARKGLADTALK-TANSGYLTRRLVDVAQDLVVT 810 + + NF GLN + + + K T + Y + L +DLVV Sbjct: 1392 RVSDLLDPDNFVYGLNHTNFVLPGEMRIGDEILPKGTKVTPSLAYKLKEL--GVEDLVVK 1449 Query: 811 EDDCGTHEGIMMTPVI-EGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWC 869 EG+++ + G V L R+ GR AED++ P T +++V + Q Sbjct: 1450 -----REEGLLVRDLEATDGSVIAELGSRIWGRFAAEDIVDPNTGEVIVRAGQEITAQDA 1504 Query: 870 DLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQ 929 ++ V +V++ S ++C ++ GVC CYGRDL+R ++ KGE++GV+AAQSIGEPGTQ Sbjct: 1505 QRIDRADVKSVRIHSPITCLSEDGVCVTCYGRDLSRRRLVEKGESVGVVAAQSIGEPGTQ 1564 Query: 930 LTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFG 989 LT+RTFH GG A +V+ + N + ++ + D Sbjct: 1565 LTLRTFHTGGVAGEDITGGLPRVEELFEARKKNALT-------DIVLPLQDFFAVFDGAE 1617 Query: 990 RTKESYKVPYGAVLAKGDGEQVAGGET--VANWDPHTMPVITEVSGF------------- 1034 + E Y V G+ + V + + D S F Sbjct: 1618 QKIERY-VSNAMESFVGELDNVLKAHLNEIEDPDAAKNLKKVVRSWFSDMSDLLNEKLLQ 1676 Query: 1035 -------------VRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIV 1081 + T + + + +L + L + + Sbjct: 1677 MRHELMQGYDWNGLNLTSLNRANEMMEELYQLLERKAGEFERIFMDALHAASLEEHVGSL 1736 Query: 1082 DAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRV 1141 + L + + + G I D + + G Sbjct: 1737 SGHFREKLDNVQNTLRTELSIVPWYIAVAAG--IKGDDPAELKNFYASYVDSLHVGDVDF 1794 Query: 1142 ADLFEARRPKEPAIL---AEISGIV--SFGKETKGKRRLVITPVDGSDPYEEMIP--KWR 1194 A +A+RP + L A + G+V +F G+ I V D + + + R Sbjct: 1795 AFDIDAKRPTKKGKLVAMAPMDGVVHETFTVTEHGQELFTIIVVKQGDSFGAFVTNAESR 1854 Query: 1195 QLNVFEGE----RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKIND 1250 +L + + + G + +LR G +A Y++ E++ VY Q V+IND Sbjct: 1855 KLRIRPDDMGTKYLFPGYRLVFDSIEASLLLRAFGKNAAADYLIGEIKSVYASQKVEIND 1914 Query: 1251 KHIEVIVRQMLRKATIVNAGSS-DFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGI 1309 KH E+++RQM K I +G S + L G+ VE++ + R GK + +G+ Sbjct: 1915 KHFEIVLRQMFSKVVIDESGDSVEMLPGDVVEWTDYEQEVRYWTLQGKKAPRGRQLCMGV 1974 Query: 1310 TKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD 1368 TK S +++S+++AASFQET +VL +AA+AGK D+L+GLKENVI+ R IPAGTG +D Sbjct: 1975 TKVSKSSKSWLAAASFQETPQVLVDAAIAGKVDKLKGLKENVIIARRIPAGTGIYKEED 2033 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 84/149 (56%), Positives = 112/149 (75%) Query: 16 EFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKY 75 +FDA+++ LASPD IR+ S GEVKK ET+NYRT +PE DGLFC RIFGP +DYEC CGKY Sbjct: 2 DFDALRVRLASPDEIRAMSHGEVKKSETVNYRTNRPEPDGLFCERIFGPTRDYECACGKY 61 Query: 76 KRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDI 135 K K+ G +CE+CGVEVT++ VRRERMGHIEL +P H WF ++ SR+G ++DM +D+ Sbjct: 62 KGRKYEGQVCERCGVEVTRSSVRRERMGHIELGTPIVHPWFFRNAQSRLGFMVDMKQKDL 121 Query: 136 ERVLYFESYVVIEGGMTNLERQQILTEEQ 164 ERV+Y+ S + + G L R ++T E+ Sbjct: 122 ERVIYYTSNLATDTGPDILPRLTVMTSEK 150 >UniRef50_P17545 DNA-directed RNA polymerase II subunit RPB1-B n=68 Tax=Trypanosomatidae RepID=RPB1B_TRYBB Length = 1766 Score = 701 bits (1808), Expect = 0.0, Method: Composition-based stats. Identities = 258/1554 (16%), Positives = 502/1554 (32%), Gaps = 194/1554 (12%) Query: 1 MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60 M +Q + + + ++ + I+S++ V+ ++ + + C Sbjct: 1 MSGGAALPVSQMELHKVNEVQFEIFKERQIKSYAVCLVEHAKSYANAADQSGEASMIC-- 58 Query: 61 IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120 ++ P+ CE C + G+IELA P +I + Sbjct: 59 VWVPLTS--------------NSACETCHRKH---PECPGHFGYIELAEPVFNIGVFDLV 101 Query: 121 PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDAL------EEFGD 174 + + + + + ++ +Q+ + + + D Sbjct: 102 LLVLKCVCKTCGALLLNTREQDVHKKLQHMTGLNRLRQVAKMAEAKCRVSTSTEDDMGID 161 Query: 175 EFDAKM-------------GAEAIQALLKSMD-------LEQECEQLREELNETNSETKR 214 FD+ G A Q + ++ E+ E + Sbjct: 162 GFDSAPFNGGSGMGPGATRGCGASQPRVSRFYGIYPTLVIKAVHEEQDAEWHADKVRQVL 221 Query: 215 KKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVIN 274 +++ L F P ++LTVLPV PP +RP + GG + +L ++ Sbjct: 222 DRVSDDDARLMGFDPQRCHPRDLVLTVLPVPPPQVRPAISF-GGLRSDDELTHQIMSIVK 280 Query: 275 RNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRG-RAITGSNKRPLKSLADMIKG 333 RNN+L+R + I R + +LQE V +N + ++ + LKSL + +KG Sbjct: 281 RNNQLRRDKESDVQAAIDR-SRALLQEHVATYFNNASTYYKPTKVNDTKKLKSLTERLKG 339 Query: 334 KQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGL--- 390 K GR R NL+GKRVD+S R+VIT P + + + G+P +A+ L P + + L Sbjct: 340 KYGRLRGNLMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTINKKRLTEF 399 Query: 391 -ATTIKAAKKMVEREEAVVWD-----------------ILDEVIREHPVLLNRAPTLHRL 432 T+ + + + + VI VL NR PTLHR+ Sbjct: 400 ARRTVYPSANYIHHPNGTITKLALLRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLHRM 459 Query: 433 GIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILS 492 + ++ +L+ YNADFDGD+M +HVP +L + E +MM N +S Sbjct: 460 SMMGHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVS 519 Query: 493 PANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRI 552 P P + QD +LG Y +T + + A +K R Sbjct: 520 PNKSAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQ-----SVALWLDLWQLPIPAILKPRP 574 Query: 553 TEYEKDANGELVAKTSLKDTTVGRAIL------WMIVPKGLPYSIVNQALGKKAISKMLN 606 K ++ + + T R MI L + +++ A +++ Sbjct: 575 LWTGKQVFSLILPEVNHPATPQDRPPFPHNDSVVMIRRGQLLCGPITKSIVGAAPGSLIH 634 Query: 607 TCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIP----EKKHEIISEAEAEVA 662 + G F + + + G SVG+ D V + ++++ + V Sbjct: 635 VIFNEHGSDEVARFINGVQRVTTFFLLNFGFSVGVQDTVADSDTLRQMNDVLVKTRRNVE 694 Query: 663 EIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSI 722 +I + + + A N L NS Sbjct: 695 KIGAAANNRTLNRKAGMTLLQSFEADVN--------SALNKCREEAAKKALSNVRRTNSF 746 Query: 723 YMMADSGARGSAAQIRQLAGMRGLMA--------------------KPDGSIIETPITAN 762 +M ++G++G+ I Q+A G G Sbjct: 747 KVMIEAGSKGTDLNICQIAVFVGQQNVAGSRIPFGFRRRTLPHFMLDDYGETSRGMANRG 806 Query: 763 FREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMM 822 + EGL ++F T R+GL DTA+KT+++GYL R+L+ +D+ D + + Sbjct: 807 YVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQRKLIKALEDVHAAYDGTVRNANDEL 866 Query: 823 TPVIEGGDVKEPLR---DRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDA 879 + G D + R ++ +D T + + + V Sbjct: 867 IQFMYGEDGLDGARIEGGQLFPLPFRDDKEMEDTYKYEYDVDGTFSGKVGGNYMDPHVRK 926 Query: 880 VKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIA------AQSIGEPGTQLTMR 933 + + +++ + + + I + + R Sbjct: 927 MLRADPQNVRKLQEEYEQLTADREWSRKMLDLEDRDKLKLNLPVNPGRLIQNARSTMGKR 986 Query: 934 TFHIGGAASRAAAESSIQVKNKGSIKLSNVKS-----VVNSSGKLVITSR----NTELKL 984 + + + + +++ + + N+ + I S N L+ Sbjct: 987 S-QVSNLSPITIIDHVRKLQEDLMKLFPSYHRGGDGYIRNTLSRERIESALTLFNVHLRQ 1045 Query: 985 IDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQ 1044 + R + YK+ A + +++ + + + G ++ Sbjct: 1046 LLASKRVLKEYKLNDRAFEYLLKEIRTKYHQSLTTPGENIGAIAAQSCGEPATQMTLNTF 1105 Query: 1045 TITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGK 1104 + + L +L+ + K + + +Y Sbjct: 1106 HNAGISSKNVTLGVPRLLELLNVSRNQKHASMTVSLFPPYDEKRNAQKAQHLIEYCTLES 1165 Query: 1105 AIVQLEDGVQISSGDTLAR-------IPQESGGTKDITGGLPRVADLFEARRPKEPAILA 1157 ++ I D I + D + R+ ++ A P + Sbjct: 1166 ITRRI---QFIYDPDPRHTVVEADRDILELEWNVMDESDAELRIQEVV-AGSPWVVRLEL 1221 Query: 1158 EISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERG-DVISDGPEA 1216 ++ + + K ++ ++ + M RQ + R G D I Sbjct: 1222 DVDMVTDKALDMKDVKQAILRVDESYIIETGMANNVRQRTIRMRSRYNEGADSIPKLKRE 1281 Query: 1217 PHDILRL---RGVHAVTRYIVNEV------QDVYRLQGVKI------------------- 1248 +L RG+ V R ++ + Q ++ G KI Sbjct: 1282 IPALLARVHLRGIPGVRRALLKDTTEFTVDQATGKMSGNKIWAIDTDGTALRRAFIGVVG 1341 Query: 1249 -NDKHIEVIVRQMLRKA---------------TIVNAGSSDFLEGEQVEYSRVKIANREL 1292 + K+I V+ K + + G + Y I + Sbjct: 1342 EDGKNIINAVKTSSNKVPEVCSLLGIEAARSKMLTELREAYLAYGLNINYRHYTILVDTI 1401 Query: 1293 EANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVI 1352 +G + A GI ++ T + SF+ET +VL AA G+ D +RG+ N++ Sbjct: 1402 CQHGYLMAVSRS---GINRS--DTSGPLMRCSFEETVKVLMAAASFGECDPVRGVSANLV 1456 Query: 1353 VGRLIPAGTGYAYHQDRM--RRRAAGEAPAAPQVTAEDASASLAELLNAGLGGS 1404 +G GTG M ++A +A A + SL L + S Sbjct: 1457 LGNQARVGTGLFDLVLNMAALQQAVPQAEAVAPGKDVNVYHSLGSTLQQNIQSS 1510 >UniRef50_C4XEN7 DNA-directed RNA polymerase n=2 Tax=Mycoplasma RepID=C4XEN7_MYCFE Length = 1506 Score = 700 bits (1807), Expect = 0.0, Method: Composition-based stats. Identities = 424/1481 (28%), Positives = 664/1481 (44%), Gaps = 179/1481 (12%) Query: 1 MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60 M + + K E + I ++LA+ D + WS GEV KPETINY+++KPERDGLF Sbjct: 16 MSNFID-KNKLNKDREIEKITLSLATKDDVLQWSNGEVTKPETINYKSYKPERDGLFDEL 74 Query: 61 IFGPVKDYECL-CGKYKRLKHRGVICEK---C---GVEVTQTKVRRERMGHIELASPTAH 113 IFGP D +C CG + G C K C + RR RMGHI L +P H Sbjct: 75 IFGPTTDNKCPVCGTKYKRSDEGTQCSKTPLCEKSKATILAKISRRSRMGHIHLQNPVVH 134 Query: 114 IWFLKSLPSRIGLLLDM---------PLRDIERVLYFESYVVIE-GGMTNLERQQILTEE 163 WF K S I LL + D+E+++Y++S++V+E GG+ L++ I+ Sbjct: 135 FWFFKIDHSIISKLLGLRVAKSSKTVSKTDLEKLIYYKSHIVLESGGIKALQKNAIIDIA 194 Query: 164 Q---------------------------------------------------YLDALEEF 172 + Y + + E+ Sbjct: 195 EAAVIYRDALLEIRSKYSEESEEYEIINESLEELESYATSKMGKDYGIDFYEYNEIIHEY 254 Query: 173 GDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETK-----------RKKLTKRI 221 D G++AI+ LL+ +DL++E + + +E+ + N K R KL KR+ Sbjct: 255 SDAI-ISTGSKAIEYLLEHVDLQKEAQLIEDEIKKINRSIKDKNHTGTRGQERSKLYKRL 313 Query: 222 KLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKR 281 ++ AF+ SG P+ M++ LPV+P DLRPLV LDGGR +TSD+N+LYRR+I RNNRLK+ Sbjct: 314 AVINAFINSGQDPKSMLIYDLPVIPADLRPLVQLDGGRHSTSDINELYRRIIIRNNRLKK 373 Query: 282 LLDLAAPDIIVRNEKRMLQEAVDALLDN-GRRGRAITGSNKRPLKSLADMIKGKQGRFRQ 340 + AP +I +NE RM+QEAVD+L+DN ++ +T + RPLKS++D + GK+GRFRQ Sbjct: 374 WEETDAPMLIKQNEYRMIQEAVDSLIDNARKKPNPVTSKDSRPLKSISDALTGKKGRFRQ 433 Query: 341 NLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLEL-RGLATTIKAAKK 399 NLLGKRVDYSGRSVI VGP L++HQ G+P++MA +LF+P+I +L +IKA KK Sbjct: 434 NLLGKRVDYSGRSVIVVGPELKMHQVGIPREMAAKLFEPWIIKELIKGDNQINSIKAGKK 493 Query: 400 MVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNA 459 VE + ++W +++ I+ PVLLNRAPTLHRL IQA+EPVLI GKAI+LHPL C +NA Sbjct: 494 AVENLDPIIWPYVEKAIQGRPVLLNRAPTLHRLSIQAYEPVLIRGKAIKLHPLSCTPFNA 553 Query: 460 DFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVN 519 DFDGDQMAVHVP++ EA EA+ LM+++ NIL P +GEPII P QD++LGLYY+T++ + Sbjct: 554 DFDGDQMAVHVPISDEAVREAKELMLASRNILGPKDGEPIINPGQDIILGLYYLTQEATD 613 Query: 520 AK--GEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRA 577 K GEG E Y + L SLHARV + I+E K + +TVG+ Sbjct: 614 DKVIGEGRYFGSYDEMMTAYENKLVSLHARVVLPISEINKRV-IPADGQDRYIVSTVGKF 672 Query: 578 ILWMIVPKGLPYSI-------VNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFA 630 I I P + + + GKK IS+ G K +Q+ Sbjct: 673 IFNSIFPDSFEFIFGKYVERNIKEVDGKKVISE--KEVLHTSGDK------NQLKNYLLP 724 Query: 631 YAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERY--NKVIDIWAA 688 Y + + +P K +I + A ++ I+ Sbjct: 725 YGMNFPEIIKNMPLNLPLGKKDIAKIVRRIFDRYVAIVTMEDLAAIISDLNSETINNLFD 784 Query: 689 ANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMA 748 + + + N +++ + +M + ++ Q G R ++ Sbjct: 785 NCANLVDYNKNTIPVWHTENLVRIIKEEYEKINEELMIE------YRKVDQEIGWR--VS 836 Query: 749 KPDGSIIE-TPITANF----REGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDV 803 + NF + L L Y ST T + ++ Sbjct: 837 DYTKMLERVWFRYTNFVADVLDKLKALGYHYSTISG------TTISISD----------- 879 Query: 804 AQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTL 863 T + EG E LRD + +D T Sbjct: 880 -----------VTTLPSTKDKIKEGDKYIEQLRDYFEQGLLTDDERYALTIQKWAEIKDS 928 Query: 864 LHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSI 923 + + ++ + + + + + + G + ++ A + Sbjct: 929 IEKDLKEVTKTDPDNPLFMMFTSGARGNSSNFVQLAGMRGLMNN------NTKILKADAE 982 Query: 924 GEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELK 983 E + T+ A + L++ SG L + Sbjct: 983 NERVVRSTVEIPVKSSFLDGLTAYEFYSSTHGARKGLTDTALNTAKSGYLTRRLVDVAQG 1042 Query: 984 LIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDG 1043 ++ Y +L + + + G + Sbjct: 1043 IVLREDDCGTDYGFEVKDILDTKTNTIIES-------------LGERIEGRFSNVPIYHP 1089 Query: 1044 QTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPG 1103 +T D ++ + + + ++R L G G D+ + Sbjct: 1090 RTKEMILDADQLITPQIAEEIVKAGIKSVEIRSVLSCYTKNGVCKKCYGKDLALNRVVNI 1149 Query: 1104 KAIVQLEDGVQI-SSGDTLARIPQESG---GTKDITGGLPRVADLFEARRPK--EPAILA 1157 V + I G L +G G +DITGG R+ +L +A +PA++A Sbjct: 1150 GEAVGVVAAQSIGEPGTQLTMRTFHTGGVAGVEDITGGFGRLMELIDAYDSPWGKPAVIA 1209 Query: 1158 EISGIVSFGKETK-------GKRRLVITPVDGSDPYEEMI---PKWRQLNVFEGERVERG 1207 E G ++ ++ K + + + D + I K R+L V +G++V G Sbjct: 1210 EHYGKITKIEDKKDTLGNASDYQAITLEYEDEEGNTQSKIYAARKDRRLRVKKGDKVIPG 1269 Query: 1208 DVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIV 1267 I +GP +++L++ +V Y++ EVQ +YRLQG+ I+DK+IE+I+RQML K I Sbjct: 1270 QKIVEGPIILNELLKVADTRSVQNYLLKEVQRLYRLQGITISDKYIEIIIRQMLSKIVIT 1329 Query: 1268 NAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQE 1327 + G S F G V+ + + L + GK + G + L ++SF++AAS+QE Sbjct: 1330 DPGDSKFFSGNLVDIFAYQRESARLISQGKKPPFGEVKIKGAKQTPLLSDSFLAAASYQE 1389 Query: 1328 TTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD 1368 T ++L A++A + D+L GLKEN+I+G IPAGT + + Sbjct: 1390 TPKILVNASIAAQSDKLEGLKENIILGHKIPAGTNCNFEEK 1430 >UniRef50_C7P941 DNA-directed RNA polymerase n=26 Tax=root RepID=C7P941_METFA Length = 891 Score = 696 bits (1796), Expect = 0.0, Method: Composition-based stats. Identities = 220/920 (23%), Positives = 372/920 (40%), Gaps = 106/920 (11%) Query: 9 KAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDY 68 + +E I L SPD IR S ++ P+T + + P GL R+ Sbjct: 4 EKYEIPKEIGEIMFGLLSPDYIRQMSVAKIVTPDTYDEDGY-PIDGGLMDTRLG------ 56 Query: 69 ECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLL 128 + G++C+ CG + + GHIELA P HI F K++ +L Sbjct: 57 ---------VIDPGLVCKTCGGRIGECP---GHFGHIELAKPVIHIGFAKTIY----KIL 100 Query: 129 DMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQAL 188 RV S + + +E+ + ++ + EE E + Sbjct: 101 KAVCPHCGRVAI--SETKRKEILEKMEKLERDGGNKW-EVCEEVYKEASKVTICPHCGEI 157 Query: 189 LKSMDLEQECEQLREE------LNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVL 242 + E+ R + L ++ +K+ +L +PEWM+LTVL Sbjct: 158 KYDIKFEKPTTYYRIDGNEEKTLTPSDVREILEKIPDEDCILLGLNPEVARPEWMVLTVL 217 Query: 243 PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEA 302 PV P +RP + L+ G + DL +I NNRL+ ++ AP++I+ + +LQ Sbjct: 218 PVPPVTVRPSITLETGERSEDDLTHKLVDIIRINNRLEENIEGGAPNLIIEDLWNLLQYH 277 Query: 303 VDALLDNGRRGRAIT-GSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYL 361 V+ DN G + RPLK+LA +KGK+GRFR NL GKRV++S R+VI+ P L Sbjct: 278 VNTYFDNEAPGIPPAKHRSGRPLKTLAQRLKGKEGRFRYNLAGKRVNFSSRTVISPDPCL 337 Query: 362 RLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWD----------- 410 +++ G+P+ +A EL P K + + ++ + V+ Sbjct: 338 SINEVGVPEIVAKELTVPEKVTKYNIERIRQLLRNGSEKHPGVNYVIRKMIGRDGVEQEY 397 Query: 411 ---------------------ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQL 449 + ++ VL NR P+LHR+ I A ++ + + Sbjct: 398 KVKITESNKDFWAENIKEGDIVERHLMDGDIVLYNRQPSLHRMSIMAHRVRVLPYRTFRH 457 Query: 450 HPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLG 509 + VC YNADFDGD+M +HVP + EA+ EA ALM+ +ILSP G PII D + G Sbjct: 458 NLCVCPPYNADFDGDEMNLHVPQSEEARAEAEALMLVEKHILSPRFGGPIIGAIHDFISG 517 Query: 510 LYYMTRDCVNAKGEGMVLTGPKEAERLYRSGL----ASLHARVKVRITEYEKDANGELVA 565 Y +T ++L + L+ L++ K+ K N A Sbjct: 518 AYLLTSSYFTKDEATLILRSGGIKDELWEPDKVENGVPLYSGKKIFSKALPKGLNLRYKA 577 Query: 566 KTSLKDTTVGRAIL-----WMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIF 620 K K + +I L ++++ +L+T + G + F Sbjct: 578 KICRKCDECKKEECPYDAYVVIKDGELIKGVIDKNGYGAEAGLILHTIVKEFGPEAGRKF 637 Query: 621 ADQIMYTGFAYAARSGASVGIDDMVIPE----KKHEIISEAEAEVAEIQEQFQSGLVTAG 676 D G + GIDD +PE + ++++EAE +V EI E+++ G + Sbjct: 638 LDSATKMAIRAVMLRGFTTGIDDEDLPEEALKEIEKVLNEAEEKVKEIIEKYERGELELL 697 Query: 677 ERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQ 736 + + + + L+ + E+ N +MA +GARG+ Sbjct: 698 PGLDLE--------ESREAYINNVLREARDKAGEIAEKYLGLDNHAVIMAVTGARGNILN 749 Query: 737 IRQLAGMRGLMAKPDGSIIE--------------------TPITANFREGLNVLQYFIST 776 + Q+A G + I + +++++GL+ ++F Sbjct: 750 LTQMAACLGQQSVRGRRIFRGYRGRVLPHFEKGSLDAKSHGFVRSSYKKGLSPTEFFFHA 809 Query: 777 HGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLR 836 G R+GL D A++TA SGY+ RRL++ QDL D +M + G D +P+ Sbjct: 810 MGGREGLVDQAVRTAQSGYMQRRLINALQDLKTEFDGTVRDSRGVMIQFMYGEDGVDPML 869 Query: 837 DRVLGRVTAEDVLKPGTADI 856 V + ++ Sbjct: 870 ADRGKSVNIDRIIDKVKMKY 889 >UniRef50_Q8SS15 DNA-directed RNA polymerase n=2 Tax=Apansporoblastina RepID=Q8SS15_ENCCU Length = 1395 Score = 696 bits (1795), Expect = 0.0, Method: Composition-based stats. Identities = 262/1479 (17%), Positives = 494/1479 (33%), Gaps = 221/1479 (14%) Query: 18 DAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKR 77 I S + I S EV P + + P R GL+ R+ Sbjct: 8 KNISFGSYSDEEIERNSCMEVVVPGCFD-KFGHPIRGGLYDLRMGP-------------- 52 Query: 78 LKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLL----DMPLR 133 C+ C + GHI+L+ + F SL S + + Sbjct: 53 -LDLSSNCKTCNLSFLNCP---GHFGHIKLSRIVLNPMFFDSLFSIVRCYCFQCKHFRIT 108 Query: 134 DIERVLYFESYVVIEGGMT--NLERQQILTEEQYLDAL--------------------EE 171 + +R++ F + ++ G +L+R +++EE+ L + +E Sbjct: 109 NYDRLILFCKFSLLLNGEEAEDLDRLYMVSEEEELYKIVSERIENAKKNRSEPLMESHQE 168 Query: 172 FGDEF-------DAKMGAEAIQALLKSMDLEQECEQLR------------EELNETNSET 212 F + + + + LR E L+ Sbjct: 169 VVHRFLQNAGSRRKCVRCGHSNPKIVKGAKMKVLKDLRKGNEKDEDGKDLEFLSPDAVRE 228 Query: 213 KRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRV 272 L L + P ++ LPV+P RP++ LDG + A + + Sbjct: 229 LMDDLFSNEADLIESIFFRRDPGMFFISNLPVIPNRFRPMIVLDGKK-AENFQTLYLNDI 287 Query: 273 INRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIK 332 + + + + L LQ A+ + DN + P +++ Sbjct: 288 LRVSVLVTKDLS----------YWPELQAAILSSFDNKNISKWSRTRMVPP--GHKQILE 335 Query: 333 GKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLAT 392 K G FR+N++GKRV+++ R+VI+ P L + G+P A L P + L Sbjct: 336 RKDGLFRRNIMGKRVNFAARTVISPDPNLETREIGIPLVFAEALTFPERAASFNVDRLKK 395 Query: 393 TIKAAKKMVEREEAVVWDIL--------------------------DEVIREHPVLLNRA 426 + D++ ++ VL+NR Sbjct: 396 AVVNGPTYPGSLYLQDGDVMLSLAHMPDEKRYALANQLLDGKKVVWRHLVDGDVVLMNRQ 455 Query: 427 PTLHRLGIQAFEPVLI-EGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMM 485 PTLHR I A + ++ + + +++H C +YNADFDGD+M VH P ++ E+R ++M Sbjct: 456 PTLHRPSIMAHKCRVLRKERTLRMHYANCKSYNADFDGDEMNVHFPQNYASEAESRHIVM 515 Query: 486 STNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVLTG------------PKE 532 + +N L P NG+PI QD ++ + +T +D ++ + L P Sbjct: 516 NDSNYLVPTNGKPIRGLVQDHIVIVTVLTMKDSFFSEEDYFTLVNAGLSDRRIVLDRPCI 575 Query: 533 AERL-YRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSI 591 + SG + +K + + + + I + I Sbjct: 576 VKPARLYSGRQVISTILKNLGLVVNIEIETNVPKNAWREH---SEERILRIREGNIVTGI 632 Query: 592 VNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKH 651 +++ +++ C I G + I + G Y G ++GIDD+++ ++ Sbjct: 633 LDKNSLGPTFKSLIHACGEIKGFATSNDLLTYIGWVGNRYLLMYGFTIGIDDLLLDKEAD 692 Query: 652 EIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDG 711 + E + ++ Q V A + D A + + M ++ Sbjct: 693 KKRREVVRVKDQEAKELQRRYVEANPDFYLYADKKAYLDSVMRTEMNSVTSEIVKVSVPS 752 Query: 712 QEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSI----------------- 754 +K N++ ++ +G++GS + Q++G G + Sbjct: 753 GLQKSFPENNMELIIATGSKGSIVNLSQISGALGQQELEGQRVPIMASGKTLPCFAALDP 812 Query: 755 ---IETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTE 811 I F G+++ QYF R+GL DTA+KTANSGYL R L+ ++ V Sbjct: 813 SPSSGGYIYHRFLTGIDLPQYFFHCMAGREGLIDTAIKTANSGYLQRCLIKHMEEAKVEY 872 Query: 812 DDCGTHEGIMMTPVIEGGDVKEPLRDRVLG--RVTAEDVLKPGTADILVPRNTLLHEQWC 869 D G + + G D + + L +VL G + +V + ++ + Sbjct: 873 DMSVRI-GKRVIQFMYGEDGLDCTKSSYLDDAEFFKRNVLLFGKSASIVSKLEDRYKDFL 931 Query: 870 DLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQ 929 L +D + + D +C + + GE++GVIAAQS+GEP TQ Sbjct: 932 SLKFRKQIDLLD-DELRRFLADRYIC-----------SLADPGESVGVIAAQSVGEPSTQ 979 Query: 930 LTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKS------VVNSSGKLVITS--RNTE 981 +T+ TFH+ G ++ +++ ++++ + + R T Sbjct: 980 MTLNTFHLAGVGAKNVTLGVPRLREILITASKSIRTPLITVPIKRRVSFDITECLRRVTL 1039 Query: 982 LKLIDEFGRTKESYKVPYGAVLAKG-----DGEQVAGGETVANWDPHTMPVITEVSGFVR 1036 + FG T+E V D GE + + ++ G + Sbjct: 1040 KDCVKRFGVTEEIVMVSGVFQKKVKIMFELDNFVDLAGEVL--DRKFLKLLGNKMKGLAK 1097 Query: 1037 FTDMIDGQTITRQ-TDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDM 1095 + + E+ D ++ + + G + D Sbjct: 1098 AKYTLGMSEAPKDDCKEVDENKENEGEDESDSDKESDPEGDNVCLEATTGENGDKDSEDH 1157 Query: 1096 PAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAI 1155 Y Q +D + ++S +T + + E +I Sbjct: 1158 STSYLEATDETDQTDDSGNTEEEEDFMNFAKKSKNV--LTFEILYPSGFNEMISSVVESI 1215 Query: 1156 LAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEG---ERVERGDVISD 1212 L I +E KG + ++ + R + V G + ++ D+ + Sbjct: 1216 LPTI-----VVREVKGMEKASVSGSQLFVKSSSIYSLTRMIEVSPGVYEDLLDILDIYNA 1270 Query: 1213 GPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSS 1272 +D+ GV A I+NEV V+ + G+ I+ + Sbjct: 1271 ESNDIYDVYLTLGVEAARHAIINEVVKVFDVYGISIDIR--------------------- 1309 Query: 1273 DFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVL 1332 + + + G L A +S I SF+ Sbjct: 1310 -----------HLLLIADYMTRKGSYSPFSRHGLG-------ADDSPIQRISFESCYSNF 1351 Query: 1333 TEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMR 1371 AA D+L ++ VG + GTG + Sbjct: 1352 KTAATFHLEDKLSNPSASLTVGNPVRCGTGCFDLIHNID 1390 >UniRef50_Q27095 DNA-directed RNA polymerase n=2 Tax=Trichomonas vaginalis RepID=Q27095_TRIVA Length = 1661 Score = 695 bits (1792), Expect = 0.0, Method: Composition-based stats. Identities = 245/1548 (15%), Positives = 479/1548 (30%), Gaps = 260/1548 (16%) Query: 1 MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60 M ++ + ++ +I L P+ I + E+ + + ++ + + GL R Sbjct: 1 MANVRQ---NAIESCLVGSIDFGLFDPEKIEMFGACEITENQMMDK--GEYVKGGLSDLR 55 Query: 61 IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120 + ++ +C+ CG G+I LA P H+ F Sbjct: 56 MGTQTRER---------------LCDTCGRNQEDCP---GHFGYIRLAEPFFHVGF---- 93 Query: 121 PSRIGLLLDMPLRDIERVLYFES-----YVVIEGGMTNLERQQILTEEQYLDAL------ 169 LL M RVL S Y+V N + Sbjct: 94 LPHCYKLLQMVCHKCGRVLCSYSDPEIQYIVTHYKGKNRFLKLFEKIASKSGKCQHSPDL 153 Query: 170 -----------EEFGDEFDAKMGAEAIQALLKS--------------MDLEQECEQLREE 204 E F + + +E ++ + L+ + + Sbjct: 154 KNPNEPDVCLDERFWELVNGDSHSEHVRVKKPCNAAVPAIEQGKDFLIKLKDVSKTEEDY 213 Query: 205 LNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRF-ATS 263 L+ + ++ + L F + P+WMIL +LPV P +RP V G + Sbjct: 214 LSAEVVLRIFENISDQDVRLLGFNPKRSHPKWMILKILPVPPLAVRPQVVSPGQSAPSQD 273 Query: 264 DLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAIT-GSNKR 322 D+ +I N RL+ ++ D ++ + +LQ + + N + + R Sbjct: 274 DITHKLSDIIICNKRLRAQRSESSTDTAMKETRTLLQYHITTYMINDKPSIERAVTKSGR 333 Query: 323 PLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIY 382 PLK ++ +KGK+G R +L GKR DYS RSVI+ + + Q G+P+++A L P + Sbjct: 334 PLKVISQRLKGKEGHLRGHLSGKRDDYSARSVISPDTSISIDQVGVPEQLAKILTFPEVV 393 Query: 383 GKLELRGLATTIKAAKKMVEREEAVVWD-----------------------ILDEVIREH 419 + L + + + V+ D + + + Sbjct: 394 TPTNQKWLESIVMKGHDDLGGANFVINDHGTRTDLSCCTDLSTITLSPGYIVERHLRDDD 453 Query: 420 PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLE 479 V+ NR P+LH++ + +++ G+ +L+P YNADFDGD+M +HVP + A+ E Sbjct: 454 IVIFNRQPSLHKMSMMGHRALIMSGRTFRLNPCDTTPYNADFDGDEMNLHVPQSQTARTE 513 Query: 480 ARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRS 539 R +M I+SP +P+I QD +LG +++ ++ Sbjct: 514 VRHIMAVPKQIISPQANKPVIGLVQDALLGCRLLSKRDTFLTRNQVMNLMMWLPTTKDT- 572 Query: 540 GLASLHARVKVRITEYEKDANGELVAKTSLKDTTV--GRAILW---------MIVPKGLP 588 + +K K + K S + + +I L Sbjct: 573 -ILPPPCILKPVQLWSGKQVFSLFLPKISHNSYSQDANKMDQNSIPLADRHVIIRDGNLL 631 Query: 589 YSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPE 648 I+ + ++ +++ F +Q + G S+G+ D V+P+ Sbjct: 632 AGILGKKTVARSEGSLIHVVINSYNTNIAKDFLNQTQLIVNNWLEHRGFSIGLIDCVVPD 691 Query: 649 ----KKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTE 704 + I + E++V + Q G + + + N+ ++ + + Sbjct: 692 FVLQEVKHEIDDVESKVQATIIKAQDGQLERMPGMSYMQSFETEVNNLTNEILSKTYKVI 751 Query: 705 TVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGS----------- 753 K NS+ M +G++G+ + Q+ G+ G Sbjct: 752 N--------AKIRGDNSLSEMLSAGSKGADTNMSQIIGVVGQQNMEGKRVKFGFNGRTLP 803 Query: 754 ---------IIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVA 804 + ++ GL ++ G R G+ DTA KT+++GY+ RRLV Sbjct: 804 HFQKHEYGLVERGFCKNSYIAGLTPPEFLFHAMGGRTGIIDTACKTSDTGYIQRRLVKSM 863 Query: 805 QDLVVTEDDCGTHEGIMMTPVIEGGDVKEP--LRDRVLGRVTAEDVLKPG-----TADIL 857 + V D + + I GGD + L + L VT D T D Sbjct: 864 ESHHVAYDGTVRNSQNEIVQFIYGGDGLDATGLETQRLALVTLNDEDFMKKYHLATEDPT 923 Query: 858 VPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGV 917 + + + L+ + D + + + ++ A + Sbjct: 924 FGQVEMDDFVLDEFLKTPNKDKFLKEEENRLREYREILQKEIFPNGSNTVVVPVNIARII 983 Query: 918 IAAQ---SIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSV-------- 966 ++Q I ++ + I + N + + Sbjct: 984 ESSQRQFDINVHVSKSDLNPLDIISRVDECVNSLIVVKGNDNISRTEQENATLLLRIMLY 1043 Query: 967 -VNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQV--AGGETVANWDPH 1023 S+ + + R E G K+ + GE V G+++ Sbjct: 1044 SHLSAKQCIFEYRLNEQAFKYILGSIKDRF-----YRSIVAPGEMVGTIAGQSIGEPSTQ 1098 Query: 1024 TMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDA 1083 +G + + + + + V ER + Sbjct: 1099 MTLNTFHFAGISAHDVTLGVPRLNELMNLAKHIRTPSVTVEFERDVAKDEEIVKAVRAQI 1158 Query: 1084 QGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQIS-----------SGDTLA---------- 1122 + Y + + D I+ LA Sbjct: 1159 ESASFKKFVIKAEIYYDPNPEETIIEPDTKWINTRIRYGGVEDRELQDLAPWVLRFEINR 1218 Query: 1123 --RIPQESGGTKDITGGL---------------PRVADLFEARRPKEPAILA-------- 1157 I DI + R+ + +AR E A A Sbjct: 1219 EEMIASNIESISDIVQKIKGMYGDKFFVIGDDDARIIRM-QARLKDEQAEFAMDVKFLRE 1277 Query: 1158 ------------EISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVE 1205 I GI + ++ + G D + E ++ Sbjct: 1278 TEQQMYKSFTLKGIPGISRVKINSAAEKMFLNPETHGFDKEKVSCLYTEGTAFREILSLD 1337 Query: 1206 RGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKAT 1265 D + + + + G+ A + E+ + G +N +H++++ M + Sbjct: 1338 HVDTVHTITNDIYQVCDVLGIEAARHSLSYEMMLIMEKAGAALNRRHLDLLADTMTQY-- 1395 Query: 1266 IVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLAT--ESFISAA 1323 L +++ + + A Sbjct: 1396 --------------------------------------GVLYPVSRHGINKTPTGTLMRA 1417 Query: 1324 SFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMR 1371 S++ T V +AAV + D +R + N+I G+ AGTG Sbjct: 1418 SYEMTNDVFFDAAVFSEIDYMRDVSSNIIAGKPSRAGTGIVEVLINED 1465 >UniRef50_P11512 DNA-directed RNA polymerase subunit A' n=23 Tax=Thermoprotei RepID=RPOA1_SULAC Length = 880 Score = 694 bits (1790), Expect = 0.0, Method: Composition-based stats. Identities = 214/893 (23%), Positives = 352/893 (39%), Gaps = 106/893 (11%) Query: 15 EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74 + +K + SP+ IR S + E + P G+ ++ Sbjct: 4 KIIRGVKFGVLSPNEIRQMSVTAIITSEVYD-EDGTPIEGGVMDPKLG------------ 50 Query: 75 YKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRD 134 + G C CG + GHIEL P HI ++K + L Sbjct: 51 ---VIEPGQKCPVCGNTLAGCP---GHFGHIELIKPVIHIGYVKHIYD----FLRSTCWR 100 Query: 135 IERVLYFESYVVIEGGMTNLERQQILTEEQYL-DALEEFGDEFDAKMGAEAIQ---ALLK 190 R+ E + + N + + + + L + +++ + Q L K Sbjct: 101 CGRIKIKEQDLERYKRIYNAIKLRWPSAARRLVEYIKKISIKNLECPHCGEKQFKIKLEK 160 Query: 191 SMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLR 250 + +E +L+ + + +++ L + ++PEWMILTVLPV P +R Sbjct: 161 PYNFNEERNGSIVKLSPSEIRDRLERIPDSDVELLGYDPKSSRPEWMILTVLPVPPITIR 220 Query: 251 PLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNG 310 P + ++ G A DL +I N RLK ++ AP +I+ + +LQ V DN Sbjct: 221 PSITIESGIRAEDDLTHKLVDIIRLNERLKESIEAGAPQLIIEDLWDLLQYHVATYFDNE 280 Query: 311 RRGRAIT-GSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLP 369 G + RPL++LA +KGK+GRFR NL GKRVD+S R+VI+ P L + + G+P Sbjct: 281 IPGLPPAKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFSARTVISPDPNLSIDEVGIP 340 Query: 370 KKMALELFKPFIYGKLELRGLATTI------KAAKKMVEREEAVVWD------------- 410 +A L P + + + I V + + D Sbjct: 341 YTIARMLTVPERVTNINIERIRQYIINGPDKWPGANYVIKPDGRRIDLRYVKDRKELASS 400 Query: 411 ------ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGD 464 + ++ VL NR P+LHR+ + A + ++ G+ +L+ L C YNADFDGD Sbjct: 401 ITAGYVVERHLVDGDVVLFNRQPSLHRISMMAHKVRVLPGRTFRLNLLDCPPYNADFDGD 460 Query: 465 QMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGE 523 +M +HVP + EA EAR LM+ NI++P G PII QD + G Y ++ + + E Sbjct: 461 EMNLHVPQSEEAIAEARELMLVHKNIITPRYGGPIIGGGQDYISGAYLLSVKTTLLTVEE 520 Query: 524 GMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKD-----TTVGRAI 578 + G + G A + + K + K + RA Sbjct: 521 VATILGVTDFV-----GELGEPAILAPKPYYTGKQVISLFLPKDFNFHGPANISKGPRAC 575 Query: 579 LWMIVPKGLPYSIVN-----QALGKKAIS-----KMLNTCYRILGLKPTVIFADQIMYTG 628 I P I N KKAI ML+ R G + D + Sbjct: 576 KDEICPHDSFIVIKNGLLLEGVFDKKAIGNQQPESMLHWSIREYGTEYGKWLMDNVFKMF 635 Query: 629 FAYAARSGASVGIDDMVIPEKKHE----IISEAEAEVAEIQEQFQSGLVTAGERYNKVID 684 + G ++ ++D+ IP++ I E ++V E +F G + Sbjct: 636 IRFLEMRGFTMTLEDITIPDEAQNEITTKIKEGYSQVDEYIRKFNEGQLEPIPG------ 689 Query: 685 IWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMR 744 + + ++D L + + + FN++Y+MA +GARGS I Q+ + Sbjct: 690 --RTIEESLESYILDTLDKLRKVAGEIATKYLDPFNNVYIMAITGARGSELNITQMTALL 747 Query: 745 GLMAKPDGSI--------------------IETPITANFREGLNVLQYFISTHGARKGLA 784 G + I + +F GL+ + F G R+GL Sbjct: 748 GQQSVRGERIRRGYRERTLSLFKYGDIAPEARGFVKNSFMRGLSPYEMFFHAAGGREGLV 807 Query: 785 DTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRD 837 DTA+KT+ SGY+ RRL++ DL + D + V+ G D P+ Sbjct: 808 DTAVKTSQSGYMQRRLINALSDLRIEYDGTVRSLYGDIVQVVYGDDAVHPMYS 860 >UniRef50_Q6C1S4 DNA-directed RNA polymerase n=2 Tax=Saccharomycetales RepID=Q6C1S4_YARLI Length = 1628 Score = 692 bits (1785), Expect = 0.0, Method: Composition-based stats. Identities = 262/1677 (15%), Positives = 508/1677 (30%), Gaps = 354/1677 (21%) Query: 5 LKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGP 64 + A+ E + L SP+ I S ++ P T + P GL+ ++ Sbjct: 1 MNMDIAKPVGAEITRVDFGLYSPEEILQLSVTQITNPTTFD-ALGNPISGGLYDPKLGAF 59 Query: 65 VKDYECLCGKYKRLKHR------------------------GVICEKCG--------VEV 92 +++ C R C CG V Sbjct: 60 LRNNCATCNLDNRFCQGHPGHIELPMPVYNPLFFTQLWVLLRAACRFCGHFRTSKAEVHK 119 Query: 93 TQTKVRRERMGHIELASPTAHIW-FLKSL----------PSRIGLLLDMPLRDIER---- 137 K+R + G + A+ +I F+K S ++D + E+ Sbjct: 120 IYCKLRLLQYGLVGAAAEIDNIKSFMKESDDDVVQDDASASVDAAVMDRQSKFTEKTIAE 179 Query: 138 -VLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQ 196 + + T LE ++ + + Y + + M + A + S E Sbjct: 180 ALKEGVTTPQGVQTATVLEERKFVIRDFYKLLVAK-SQCAQCGMHSPAYRKDGISKIFEM 238 Query: 197 ECEQLREELNETNSETKRKKLTKRIKLLE------------------------------- 225 + +E++N++ R + R + Sbjct: 239 PLSENKEKVNQSKGLRARNMIRDRSDPINEYPLPKAGANGRYLLSSEVRNILVTLFEHEQ 298 Query: 226 -----------AFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVIN 274 F + L + V R G S N L +V++ Sbjct: 299 QLMSVLFRNRPNFDSQSISGDMFFLKNIVVPATRFRLP-AARGEEVVESTTNTLLVKVLS 357 Query: 275 RNNRLK---------RLLDLAAPDIIV-----RNEKRMLQEAVDALLDNGRRGRAITGSN 320 +++ RL + P+ V N LQ V+ +D+ + + Sbjct: 358 TGMKIRDLNGTIAKMRLEKIGLPERKVTFAALMNAFVELQNDVNGFIDST---KGNQKTG 414 Query: 321 KRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPF 380 P+ + ++ K+G FR+N++GKRV+Y+ RSVI+ P + ++ G+P A++L P Sbjct: 415 SVPVPGIKQTLEKKEGLFRKNMMGKRVNYAARSVISPDPNIETNEIGVPPVFAVKLTYPE 474 Query: 381 IYGKLELRGLATTI------KAAKKMVEREEAVV-------------------------- 408 + L+ + ++ E+ + Sbjct: 475 PVTPYNVAELSRAVINGPDVWPGAIQIQTEDGKMISLEGMTLEQRTATANQLLTPSANAS 534 Query: 409 ----WDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIE-GKAIQLHPLVCAAYNADFDG 463 + + VL+NR PTLH+ + ++ K ++LH AYNADFDG Sbjct: 535 GFTNKKVFRHIRNNDVVLMNRQPTLHKASMMGHRVRVLPKEKTLRLHYANTGAYNADFDG 594 Query: 464 DQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKG 522 D+M +H P A+ EA L + + L+P +G+P+ QD + +T +D + Sbjct: 595 DEMNMHFPQNENARAEALLLANTDSQYLTPTSGKPLRGLIQDHISAGVLLTSKDTFFTRQ 654 Query: 523 EGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTV-GRAILWM 581 E L + V + + G+ V T LK+ T GR L + Sbjct: 655 EYQQLIYGCLRPEDGHTADVGRIHTVPPAVIKPVPLWTGKQVITTVLKNITPIGRPGLNL 714 Query: 582 ---------------------IVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIF 620 L I++++ A ++++ + I G Sbjct: 715 NAKNKVKNEYWGEGSTENSVIFQNGELVCGILDKSQYGAADYGLVHSIHEIYGAHIAGKL 774 Query: 621 ADQIMYTGFAYAARSGASVGIDDMVIPEK-----------KHEIISEAEAEVAEIQEQFQ 669 + Y G + G+DD+ + + ++ +A AEV + E Sbjct: 775 LSVLGRLFTRYVMNIGLTCGMDDLWLTAEGNNWRTTTLEGAKDVGVKAAAEVTNLPEDTD 834 Query: 670 SGLVTAGERYNKVIDIWAA--ANDRVSKAMMDNLQ-TETVINRDGQEEKQVSFNSIYMMA 726 +R +++ D +S++ ++ + + K+ N++ MA Sbjct: 835 PEDPELLKRLEEILRDDNKLGILDAISQSKVNAVTTSVVSQCIPNGTMKRFPQNAMQRMA 894 Query: 727 DSGARGSAAQIRQLAGMRGLM--------------AKPDGSIIE------TPITANFREG 766 SGA+GS + Q+ G P E + + F G Sbjct: 895 LSGAKGSNVNVSQIMCGLGQQALEGRRVPVMVSGKTLPAFKPFETDAIAGGFVASRFFSG 954 Query: 767 LNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVI 826 + +Y+ R+GL DTA+KT+ SGYL R L+ + + T D+ + + Sbjct: 955 IRPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLIKQLEGVHSTYDNTVRDSDGALIQFM 1014 Query: 827 EGGDVKEPLRDRVLGR--VTAEDVLKPGTADI---------------------------- 856 GGD + +++ L + E+ Sbjct: 1015 YGGDSVDVIKESHLQQFDFCVENFQAMVHKHQPGGNVDNLDTDTAIEYAKKAKKKAKKAT 1074 Query: 857 --------------LVPRNTLLHEQWCDLLEENSVDAVKVRSV-----VSCDTDFGVCAH 897 + E++ + LE V S D GV Sbjct: 1075 SDAELPEPTISLYNPAKYLGSVSEEFSNSLEAYIASRPDVFPPKKSGKKSTYADQGVTEK 1134 Query: 898 CYGRDLARGHI---INKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKN 954 + + ++ +N GEA+G+IA+QSIGEP TQ+T+ TFH G + +++ Sbjct: 1135 KFRSLMQLKYMQSTVNPGEALGIIASQSIGEPSTQMTLNTFHFAGHGAANVTLGIPRMRE 1194 Query: 955 KGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGG 1014 I ++ KS++ L + ++ + + + + + + Sbjct: 1195 ---IIMTASKSIMTPQMSLPVLPDVSDAEAETFCRSVQRVVLSEFVDYIEVTEKTRAETM 1251 Query: 1015 ETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDL 1074 A + D+ R V+ K++ Sbjct: 1252 TQGAARSFDVKMQFYTAKEYEEEYDVSPDMLKKRIALHYLNRIEKAVVKELRDQRVSKEV 1311 Query: 1075 RPALKIVDAQ-------------------GNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI 1115 A+ V D + Sbjct: 1312 DGAITEVKETRSKAPSKASDEADDEDDDEDEDEAKEKRSTKQSVSYDEGEEEHKTAKDAV 1371 Query: 1116 S-------------SGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAE---- 1158 G+ + + + D+ + + + Sbjct: 1372 EGDSDSDSDSDSDSEGENVMSDT-DDSDVEMADDEEEGEDDILSRYKTIKSFKFDKQGEW 1430 Query: 1159 ISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDG----- 1213 + + +TK + I IP + + + + + ++G Sbjct: 1431 CTFTIMLPGDTKKLLMVNILEDLCRSQVVREIPNIGRCIFPKADSPKDRKLTTEGVNFRE 1490 Query: 1214 --------------PEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQ 1259 + +L+ GV A +V E+ +V++ + +N +H+E+I Sbjct: 1491 MWEQGEFIDVNAIYSNDIYAVLKTYGVEAARNTMVQEINNVFKTYAITVNLRHLELIADM 1550 Query: 1260 MLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESF 1319 M R G A +G+ + S Sbjct: 1551 MTR--------------------------------EGTYLAFNR---MGVD----SNTSP 1571 Query: 1320 ISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAG 1376 S++ T LT+A + G D L +++GRL GTG + + Sbjct: 1572 FLKMSYETTCGFLTKAVLDGGCDALESPSARIVIGRLSGVGTGSFDVKAPIIEEPEE 1628 >UniRef50_O27125 DNA-directed RNA polymerase subunit A' n=5 Tax=Archaea RepID=RPOA1_METTH Length = 870 Score = 691 bits (1784), Expect = 0.0, Method: Composition-based stats. Identities = 221/902 (24%), Positives = 363/902 (40%), Gaps = 114/902 (12%) Query: 14 TEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCG 73 ++ I L SP+ IR S ++ P+T + + P +GL R+ Sbjct: 5 LKKISQINFGLMSPEDIRKMSVTQIVTPDTYDEDGY-PIENGLMDPRLG----------- 52 Query: 74 KYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLR 133 + + C CG + + G I LA P H+ F ++ +L R Sbjct: 53 ----VIDPSLRCRTCGAKGGECP---GHFGSINLARPVIHVGFADTIH----KILRSTCR 101 Query: 134 DIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDE------FDAKMGAEAIQA 187 RVL E+ + RQ+IL + ++L E D E Q Sbjct: 102 KCGRVLLTETEIE-------EYRQRILDAMEKEESLTPIIKEIYAEARRDKCPHCEEEQE 154 Query: 188 LLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPP 247 +K E + L + + ++++ L+ +PEWM+LTVLPV P Sbjct: 155 EIKLDKPVSIVEGDYK-LTPSEVRERLERISDDDALILGVNPEVARPEWMVLTVLPVPPV 213 Query: 248 DLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALL 307 +RP + L+ G + DL ++ N RLK ++ AP +IV + +LQ V Sbjct: 214 TVRPSITLETGERSEDDLTHKLVDILRINQRLKENMEAGAPQLIVEDLWELLQYHVTTYF 273 Query: 308 DNGRRGRAI-TGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQC 366 DN G + RPLK+LA +KGK+GRFR NL GKRV++S R+VI+ P + +++ Sbjct: 274 DNEASGVPPARHRSGRPLKTLAQRLKGKEGRFRSNLSGKRVNFSARTVISPDPNISINEV 333 Query: 367 GLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVV------------------ 408 G+P+ +A E+ P + + + I+ + V+ Sbjct: 334 GVPEIIAREVTVPVYVTEWNIDRMREYIENGPDVHPGANYVIRPDGRKIRIYNETKEVVL 393 Query: 409 ------WDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFD 462 + + + VL NR P+LHR+ + A + ++ K +L+ VC YNADFD Sbjct: 394 ENLKPGYIVERHLKDGDIVLFNRQPSLHRMSMMAHQVRVLPYKTFRLNLCVCPPYNADFD 453 Query: 463 GDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKG 522 GD+M +HV T E++ EA+ LM +ILSP G PII D + G Y +TR Sbjct: 454 GDEMNMHVFQTEESRAEAKTLMRVQEHILSPRFGGPIIGGIHDHISGAYLLTRKSAVFSE 513 Query: 523 EGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLK-----DTTVGRA 577 E V K+A ++ D N A+ K + Sbjct: 514 E-KVFQILKKAGLPLPDSRGRDWTGKEIFSMVLPDDLNMVYRAEVCRKCEECLEMECEND 572 Query: 578 ILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGA 637 +I L ++++ K+L+ + G F D A +G Sbjct: 573 AYVVIENGQLISGVIDEKAYGAFAGKILDHIVKEYGTDAAREFLDSATKLAIAGIMHAGF 632 Query: 638 SVGIDDMVIPEKKHEIIS----EAEAEVAEIQEQFQSGLVTAGER-------YNKVIDIW 686 + +D IPE+ E I AEA V ++ E +++G + K++ + Sbjct: 633 TTSTNDEEIPEEARERIEAHLRNAEARVDQLIEAYENGELEPLPGRSLEETLEMKIMQVL 692 Query: 687 AAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGL 746 A D+ + + N +MA +GARGS + Q+ G Sbjct: 693 GEARDKSGEIAESYFDMDE--------------NHAVIMALTGARGSMLNLTQITACVGQ 738 Query: 747 MAKPDGSI--------------------IETPITANFREGLNVLQYFISTHGARKGLADT 786 + G I + ++++EGL+ +++F G R+GL DT Sbjct: 739 QSVRGGRISRGYDNRTLPHFKKGELGAKSRGFVHSSYKEGLDPIEFFFHAMGGREGLVDT 798 Query: 787 ALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAE 846 A++TA SGY+ RRLV+ QDL V E+ ++ G D +P + G++ Sbjct: 799 AIRTAQSGYMQRRLVNALQDLTVDENGRVVDNRGVIIQNRFGEDGVDPAKSDY-GKIVDL 857 Query: 847 DV 848 D Sbjct: 858 DK 859 >UniRef50_C4M5C2 DNA-directed RNA polymerase n=4 Tax=Entamoeba RepID=C4M5C2_ENTHI Length = 1636 Score = 691 bits (1782), Expect = 0.0, Method: Composition-based stats. Identities = 262/1553 (16%), Positives = 517/1553 (33%), Gaps = 216/1553 (13%) Query: 11 QTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYEC 70 +T+ IK L S + IR ++ + +++ KP GL R+ Sbjct: 5 NMETKRVKQIKFTLLSSEQIRKMGVCKITESTSVSSD-GKPVLGGLADPRMGP------- 56 Query: 71 LCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDM 130 +G C+ C T+ G+IEL P + ++K + +L Sbjct: 57 --------FEKGEECQTCRGTRTECP---GHFGYIELTQPVYNAIYMKYILH----VLKC 101 Query: 131 PLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDAL------EEFGDEFDAK----- 179 +R+ V T ER + + E + + E+ D + Sbjct: 102 VCPICKRIYCHGDERVKNIKSTGEERLKEIYEFIHKNYKACGVLSEKKKDHDKHQNNEEE 161 Query: 180 -----MGAEAIQALLKSMDLEQECEQLRE---------ELNETNSETKRKKLTKRIKLLE 225 + L + E + E R+ + ++ K +T + Sbjct: 162 EEQNPCNGPIVDYELPKLKSENKLEIRRKNGIKTNEENDFKPRDALAIFKDMTDEDVRVL 221 Query: 226 AFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDL 285 F P++MI T++PV PP +RP + +G + + DL LY VI N RLK + Sbjct: 222 GFDPIDCHPKFMIFTLIPVPPPCVRPSIVSEGAKESKDDLTVLYENVITANERLKE-ENQ 280 Query: 286 AAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGK 345 + K M + + A + T K+ KS+ + + KQGR R NL+GK Sbjct: 281 KCEGVSEYYNKLMELQTICAKISMKNVKLPETMLRKKNFKSIEERLSSKQGRLRLNLMGK 340 Query: 346 RVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI------KAAKK 399 RVD+S R+VI+ P L + + G+P +A L P + + L + Sbjct: 341 RVDFSARTVISPDPNLSMDEVGVPTGVAKILTFPEVVTQHNKEKLQKLVSAGMNDYPGAF 400 Query: 400 MVEREEAVVWD-------------ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKA 446 M+ER+ + + ++ V+ NR P+LHR+ + + ++ Sbjct: 401 MLERKNGQTYRLNGSEKIIDIGDTVHRYIMNGDYVIFNRQPSLHRMSMMGHKVRVLPFST 460 Query: 447 IQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDV 506 +++ YNADFDGD+M +HVP TLEA+ E LM++ I++P + PI+ QD Sbjct: 461 FRMNLCDTTPYNADFDGDEMNLHVPQTLEARAEVATLMLTPTQIITPQDNGPIMGIVQDT 520 Query: 507 VLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAK 566 G Y +T+ E +V + + G + A +K K +++ Sbjct: 521 QCGSYLITKRETFI--EQLVFYNILQCLDNFD-GTVPIPAILKPIPKWTGKQVFTQILPT 577 Query: 567 TSLKDTTVG------------RAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGL 614 + + ++++ L S+ N++ K S ++ T ++ G+ Sbjct: 578 INFHRGNWSIKELLKNGPAVADSDVYILDGVHLVGSLRNKSEFGKNRSGIIQTIFKDKGM 637 Query: 615 KPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVT 674 + T +F ++ T ++ G +VG+ D+V+P+ H+ I + + +F ++ Sbjct: 638 EATKVFFNKTQATVNSWILTRGFTVGVGDIVVPQSVHDSIRANVEKSKKEAVKF----LS 693 Query: 675 AGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSA 734 + + + + L+ + N++ M DSG++GS Sbjct: 694 HQHDDEIKVQAGNTMFENLESELGSLLEKLKNECDSITTKSLKKDNNLLAMVDSGSKGST 753 Query: 735 AQIRQLAGMRGLMAK--------------------PDGSIIETPITANFREGLNVLQYFI 774 I Q+ G G + + ++ GL+ ++F Sbjct: 754 TNILQMVAFVGKQEINNLRIPFGFYKRTLPHYWKEDYGFVSRGFVENSYVMGLSPQEFFF 813 Query: 775 STHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEP 834 R+G+ DTA+KT+++GY+ R++V +D+ D M + GGD + Sbjct: 814 HAMAGRQGIIDTAVKTSDTGYIQRKMVKCMEDVQCKYDRTVRRSSGDMVEFMYGGDGVDA 873 Query: 835 LR--------------DRVLGRVTAEDVLKPGTADIL----VPRNTLLHEQWCDLLEENS 876 L D G + D K + LL E + L + Sbjct: 874 LMCETQKYIYCNDSKPDNFEGSINDYDTFKMNELYKWDLNDEKLSELLDEDIYNKLFSDE 933 Query: 877 VDAVKVRSVVSCDTDFGVCAHCYGRDLA------RGHIINKGEAIGVIAAQSIGEPGTQ- 929 + + + R L + + VIAA+ + P +Q Sbjct: 934 YQTLFDNEFQRILDERAELYQPWRRSLDLKPCDIHIVVNFARQIDNVIAARYL--PKSQR 991 Query: 930 -----------LTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSR 978 + + + + + SS + +I Sbjct: 992 SNLDPKYVIERENALIKELSSIGAVKNDKFDEERFKDALGSFGKLLHCTLSSKQCLIQHH 1051 Query: 979 NTELKLIDEFGRTKESYKVPYGAVLAKGDGEQV--AGGETVANWDPHTMPVITEVSGFVR 1036 ++ D R K Y+ GE V +++ +G Sbjct: 1052 LSKESFDDLMDRIKNIYE-----RSFINPGEMVGSIAAQSIGAPATQMTLNTFHHAGISS 1106 Query: 1037 FTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMP 1096 + + + + + + ++ L D Sbjct: 1107 ASVTEGVPRLKELLNVSKTPKTPSMNVYLTNDTRESMVDLDKELNKTIPYTKLKDLIDNV 1166 Query: 1097 AQYFLPGKAIVQLED-----GVQISSGDTL----------------ARIPQESGGTKDIT 1135 +F P A +E+ I + + DI Sbjct: 1167 EIWFDPDIANSVIEEDREFINDFIEVEEIKPEDYCKWTIRLVFGYNKMVSMGVDSDSDIL 1226 Query: 1136 GGLPRVADLFEARRPKEPAIL-AEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWR 1194 ++ +LF K+ ++ ++ + IV+ + R + + + + + Sbjct: 1227 R--VKIKELF-----KDALVIPSDSNNIVNGTVKIVVHIRFRVGSISECSNIDHLTDEVD 1279 Query: 1195 QLNVFEGERVERGDVI--SDGPEAPHDILRLRGVHAVTRYIV---------NEVQDVYRL 1243 + + D + + I ++ IV +++Q V Sbjct: 1280 KSVEAVAYYKSKLDELLRTVVISGIEGITKVIIPQKPKNAIVVDPETKMLRDQLQWVVFT 1339 Query: 1244 QGVKIN----------DKHIEVIVRQMLRKATIVNAGSSDF-------LEGEQVEYSRVK 1286 +G + K + V + AG + L G V + + Sbjct: 1340 EGSNMAGLAECDNVDFYKTVTNNV-YETFLYLGIEAGRTQLEAELIKTLSGSYVNFRHLA 1398 Query: 1287 IANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRG 1346 + + G++ +G+++ I+ ASF++T AA + D L G Sbjct: 1399 LMADVMTFTGRIQPFNR---MGLSRG---RAGVITRASFEQTLEQFRRAAAFSESDILNG 1452 Query: 1347 LKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQVTAEDASASLAELLNA 1399 + +N+++G+ AGTG + A E + + + Sbjct: 1453 ISQNILMGQRTVAGTGAFTVLLDIDSLKASNIDENSFSEEEADKKAFIDGFDV 1505 >UniRef50_P41556 DNA-directed RNA polymerase subunit A' n=22 Tax=Archaea RepID=RPOA1_METVS Length = 889 Score = 689 bits (1778), Expect = 0.0, Method: Composition-based stats. Identities = 211/898 (23%), Positives = 353/898 (39%), Gaps = 112/898 (12%) Query: 14 TEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCG 73 +E I L SP+ IR+ S ++ +T + + P GL R+ Sbjct: 7 PKEIGDITFGLLSPEQIRTMSVAKIVTADTYDDDGY-PIDGGLMDTRLG----------- 54 Query: 74 KYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLL----D 129 + G++C+ C V GHIEL+ HI F K + + + Sbjct: 55 ----VIDPGLVCKSCSGRVGTCP---GHFGHIELSKSVIHIGFAKDIYKLLKAVCPHCGK 107 Query: 130 MPLRDIERVLYFESYVVI--EGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQA 187 + + +I+R Y E + + +GG +L E + ++ Sbjct: 108 VTVTEIKRDEYLEKMLKLEEDGGDPWTLSDDLLKEAA----------KSSVCPSCGEVKY 157 Query: 188 LLKSMDLEQECE---QLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPV 244 +K + + +++L + +K+ L +PE+M+LTVLPV Sbjct: 158 DIKYDKPTTYHQLDGKSQKQLTSSEVREILEKIPNEDCKLLGINSRVARPEYMVLTVLPV 217 Query: 245 LPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVD 304 P +RP + L+ G + DL +I N RL+ ++ AP++I+ + +LQ ++ Sbjct: 218 PPVTVRPSITLESGERSEDDLTHKLVDIIRINQRLEENINGGAPNLIIEDLWDLLQYHIN 277 Query: 305 ALLDNGRRGRAI-TGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRL 363 DN G + RPL++LA +KGK+GRFR NL GKRV++S R+VI+ P L + Sbjct: 278 TYFDNEAPGIPPARHRSGRPLRTLAQRLKGKEGRFRHNLAGKRVNFSARTVISPDPRLSI 337 Query: 364 HQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDI------------ 411 ++ G+P+ +A EL P + + I+ V+ + Sbjct: 338 NEVGIPELIAKELTVPEKVTPYNIERIRKLIENGSDKHPGVNYVIKKVKTKDGKEEEYKI 397 Query: 412 --------------------LDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHP 451 + VL NR P+LHR+ I A + ++ + + + Sbjct: 398 KITDTNKKMWVENIVDGMVVERHLGDGDVVLYNRQPSLHRMSIMAHKVKVLPYRTFRHNL 457 Query: 452 LVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLY 511 VC YNADFDGD+M VHVP + EA+ EA LM+ +I+SP G PII D V G Y Sbjct: 458 CVCPPYNADFDGDEMNVHVPQSEEARAEAETLMLVEKHIISPRYGGPIIGAIHDFVSGAY 517 Query: 512 YMTRDCVNAKGEGMVLTGPKEAERLYRSGL----ASLHARVKVRITEYEKDANGELVAKT 567 +T +L L ++ + K N + AK Sbjct: 518 VLTSSNFIKDEALTLLKSSGFGSELGEPDFVENGIEYYSGKSLFSKTLPKGLNLQYKAKV 577 Query: 568 SLKDTTVGRAI-----LWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFAD 622 K R +I L ++++ +LNT + G + F D Sbjct: 578 CKKCVQCKREECENDAFVIIRNGRLVQGVIDKNGFGAETGVVLNTIVKDFGSEDARTFLD 637 Query: 623 QIMYTGFAYAARSGASVGIDDMVIP----EKKHEIISEAEAEVAEIQEQFQSGLVTAGER 678 G + GIDD IP ++ +++ +AE++V EI E+++ G + Sbjct: 638 SATKMSVKSMMLRGFTTGIDDEDIPSEAIQEIQDLLDKAESDVQEIVERYEGGTLDPLPG 697 Query: 679 YNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIR 738 + +M L E+ N +MA +GARGS I Sbjct: 698 RG--------IEESREAYIMQILGKARDDTGKVAEKYLSKENHAALMARTGARGSLLNIT 749 Query: 739 QLAGMRGLMAKPDGSIIE--------------------TPITANFREGLNVLQYFISTHG 778 +A G + G + + + +++GL +YF G Sbjct: 750 MMAASVGQQSVRGGRVFRGYRGRTLPHFGEGSLDAKSHGFVRSCYKKGLAPTEYFFHAMG 809 Query: 779 ARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLR 836 R+GL D A++TA SGY+ RRLV+ QD+ D ++ G D+ +P + Sbjct: 810 GREGLVDQAVRTAQSGYMQRRLVNALQDIKAEYDGTVRDSRGIIVQFNYGEDLVDPSK 867 >UniRef50_C6HPI8 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus H143 RepID=C6HPI8_AJECH Length = 1333 Score = 687 bits (1772), Expect = 0.0, Method: Composition-based stats. Identities = 260/1476 (17%), Positives = 488/1476 (33%), Gaps = 282/1476 (19%) Query: 3 DLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPE-RDGLFCARI 61 DL K + IK + S I S + EV + + + G R+ Sbjct: 10 DLGKAQVVDRVPKVIKEIKFGVLSTQDIVSQAVVEVSDRKLFDLDNDRAVAPHGPLDGRM 69 Query: 62 FGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLP 121 + + C+ CG + + HI L T FL+ L Sbjct: 70 G---------------ISSKSGTCDTCGGALQECS-------HILLP-ETERRAFLRELR 106 Query: 122 SR---------IGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEE----QYLDA 168 I ++ R R Y + V +I E+ + Sbjct: 107 RPGIDNLRRMQIAKKINERCRKT-RTCYKCNAVNGVVKKAGTSALKITHEKFRAFNASTS 165 Query: 169 LEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFV 228 +++ +A + D+++ ++ ++L+ + ++ L + Sbjct: 166 VKKIPPPSKVVFDKSFEEAKKSNPDIDKHFKKAHDDLHPLRVLRLFRSVSNEDCELLSLN 225 Query: 229 QSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAP 288 +PE + +P P +RP V + DL +I N LK L AP Sbjct: 226 PEEARPEVFLWQYVPAPPVCIRPSVGQEAAST-EDDLTAKLGDIIQSNINLKNALIKGAP 284 Query: 289 DIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVD 348 + +Q + +++ G +P++ +KGKQGRFR NL GKRVD Sbjct: 285 VQTIIECWDYMQLQLAVYINSDVPGLQKAD-FGKPIRGFCQRLKGKQGRFRGNLSGKRVD 343 Query: 349 YSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAA----------- 397 +SGR+VI+ P LR+++ +P+ +A+ + P + L I+ Sbjct: 344 FSGRTVISPDPNLRVNEVAVPQLVAMNMTYPEQVTRYNKEKLRQRIRNGTKTWPGANYVL 403 Query: 398 --------------KKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIE 443 +V E + + VL NR P+LH+L I + + Sbjct: 404 KKSQNFKMNLKFGNPNLVANELEEGDIVERHIEDGDIVLFNRQPSLHKLSILSHFAKVRP 463 Query: 444 GKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPS 503 + +L+ VC YNADFDGD+M +HVP T EA+ EA LM NN+ +P NGEPII Sbjct: 464 HRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGEPIISAI 523 Query: 504 QDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGEL 563 QD + Y ++ V + LY +L + + + G+ Sbjct: 524 QDFITAAYLLSSKDVFYDRKTFT------HICLYMLESDTLFDLPPPSVLKPQILWTGKQ 577 Query: 564 VAKTSLKDTTVGRAILWM-------------------------IVPKGLPYSIVNQALGK 598 V ++ ++ + I + +++++ Sbjct: 578 VFNVLMRPNKQSPVLINLDAACREFKAPKGTPRDLDANDGWLCIRNSEIMCGVMDKSTIG 637 Query: 599 KAIS-KMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDM----VIPEKKHEI 653 + R G +++ + G S+GI D+ + E+KH I Sbjct: 638 SGKKDSVFYVMLRDFGPDVASEGMNRLSRLSARWLTNLGFSIGITDVYPGEKLLEEKHHI 697 Query: 654 ISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQE 713 + A A+ E+ + F++G + ++ + + A + +SK + Sbjct: 698 VEHAYAQCDEVIQLFKNGKLEKAPGCDEQMTMENAISGLLSKVRQQ--------AGEICI 749 Query: 714 EKQVSFNSIYMMADSG---------------ARGSAAQIRQLAGMRGLMAKPDGSIIETP 758 + +NS +MA SG R S++ I Q ++ Sbjct: 750 AELSRWNSPLIMATSGLMKSLEDLSTRYDDTVRNSSSNIVQF-----QYGDDKLDPVD-- 802 Query: 759 ITANFREG-LNVLQY---FISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDC 814 EG + + F T ++ G L ++ + Q+L+ E Sbjct: 803 -----MEGRAKPVHFDRTFTHAEV-------TTFDNSDKGLLPDEIITLCQNLLAPERAK 850 Query: 815 GTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEE 874 ++ + + +A D L+ + L Sbjct: 851 LARFDLLGKKLEYNDRSDHGIDQLE----SARDFLQSIEDYVCAKAEKLRSIDSGTKQRG 906 Query: 875 NSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRT 934 V S + + C Y R + G A+G + AQSIGEPGTQ+T++T Sbjct: 907 KGVIHTAKVSTRALTSFITACLTKYKR-----AQVEPGHAVGAVGAQSIGEPGTQMTLKT 961 Query: 935 FHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKES 994 FH G A + + + +K ++N+S ++ EL + + Sbjct: 962 FHFAGVAGMSITQGVPR-----------IKEIINASKEISTPVITCELV----NKQDLRA 1006 Query: 995 YKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDM-IDGQTITRQTDEL 1053 ++ G V + + + + +G + ++ ID TI EL Sbjct: 1007 AQIVKGRVEKTFVRDII-------------YYIEEDWTGNEAYINIKIDFSTIQNLQLEL 1053 Query: 1054 TGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGV 1113 T L+ + +R + G+ + I + L Sbjct: 1054 TLQDILMAIKKHKRFKSADLKFRSF------GSHIHIFVDQQTTRTALSKTEEAATGADP 1107 Query: 1114 QISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKR 1173 I + K ++ G Sbjct: 1108 YIR------------------------------LKHLKRLIPNIQVIGHPQCA------- 1130 Query: 1174 RLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYI 1233 R +I + + ++ + + + + ++ + + G+ A I Sbjct: 1131 RAIIRTDETNTTNTLLVEGYGLRDCMTTDGINGHHTRTN---NIMETRAVLGIEAARTTI 1187 Query: 1234 VNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELE 1293 V E+ +V + + I+ +H++++ M Sbjct: 1188 VEEIGEVMKD--MAIDPRHMQLLADVMT-------------------------------- 1213 Query: 1294 ANGKVGATYSRDLLGITKASLAT--ESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 Y ++LGIT+ LA +S + ASF++T L +A AG+ D + G+ E + Sbjct: 1214 --------YKGEVLGITRFGLAKMRDSVLQLASFEKTADHLFDAGGAGRTDLIEGVSECI 1265 Query: 1352 IVGRLIPAGTG-------YAYHQDRMRRRAAGEAPA 1380 IVG+ + GTG +++ ++ RR A Sbjct: 1266 IVGKSVSLGTGAMEVVRALNFYEGQIGRRKTTFEDA 1301 >UniRef50_D1H4X6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Vitis vinifera RepID=D1H4X6_VITVI Length = 1819 Score = 687 bits (1772), Expect = 0.0, Method: Composition-based stats. Identities = 230/1178 (19%), Positives = 411/1178 (34%), Gaps = 183/1178 (15%) Query: 1 MKDLLKFLKA----QTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGL 56 MKD ++F K + ++I+ AL S I + +V + + KP +GL Sbjct: 1 MKDGIQFTKEPYIEDVGPRKIESIRFALFSESEISKAAEVQVWRGVYYD-ANRKPIENGL 59 Query: 57 FCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWF 116 R+ ++ C C G++ LA P ++ + Sbjct: 60 LDPRMGP---------------ANKNGTCATCLGNFRDCP---GHCGYLTLALPVYNVGY 101 Query: 117 LKSLPSRIGLLLDMPLRDIERVLYFESYVV--IEGGMTNLERQQILTEEQYLDALEEFGD 174 L ++ + + R + + Y+ M L++ +++ + Sbjct: 102 LSTIVDILKCICKSCSRVLLDEKASKDYLKKMRSQKMEALKKAELMKKIVQKCTAMASSK 161 Query: 175 EFDAKMGAE-------------------------AIQALLKSMDLEQECE---QLREELN 206 + +++ ++ +E + + + LN Sbjct: 162 KAVKCSRCGYMNGIVKKAVSVLGIIHDRSKIADGSLEECSSAISHTKESKASFSVVDILN 221 Query: 207 ETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGG-RFATSDL 265 + K++ L +PE ++LT + V P +RP V +DGG + +D+ Sbjct: 222 PVKVLSLFKRMMDEDCDLLNL---AERPEKLVLTNIGVPPIAIRPSVFMDGGTQSNENDV 278 Query: 266 NDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLK 325 + +R+I N L + L LQ V +++ RG + RPL Sbjct: 279 TERLKRIIQANASLHQELQDTGSTSKCLAGWDYLQIEVAQYINSDVRGVPLAMQAARPLS 338 Query: 326 SLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKL 385 +KGKQGRFR NL GKRV+Y+GR+VI+ P L++ + +P MA L P Sbjct: 339 GFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPILMAKILSYPERVSHH 398 Query: 386 ELRGLATTIKAAKKMVEREEAVVWD------------------------ILDEVIREHPV 421 + L I + + + + + V Sbjct: 399 NIEKLRQCILNGPFKYPGAKLIRYPDGSMRSLMFSGRKRFADELKYGYIVERHLEDGDVV 458 Query: 422 LLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEAR 481 L NR P+LHR+ I ++ + ++ + VC YNADFDGD+M +HVP T EA+ EA Sbjct: 459 LFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAL 518 Query: 482 ALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGL 541 LM NN+ +P NGE ++ +QD + + +TR L Y Sbjct: 519 MLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCS------YMGDG 572 Query: 542 ASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWM---------------IVPKG 586 L I + + G+ + L+ R L + + P Sbjct: 573 MDLVDLPTPAIIKAMELWTGKQLFNVLLRPHANVRVYLNLTVMEKTYNKRRGKETMCPSD 632 Query: 587 LPYSIVN-----QALGKKAIS-----KMLNTCYRILGLKPTVIFADQIMYTGFAYAARSG 636 N LGK + + + R +++ + G Sbjct: 633 GFVYFRNSELISGQLGKATLGNGNKDGLFSVLLRDYNAHAAAACMNRLAKLSARWIGNHG 692 Query: 637 ASVGIDDM----VIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDR 692 S+GIDD+ ++ ++K + I E E+ +Q+ G + N A Sbjct: 693 FSIGIDDVQPGGLLNDQKSKRIEEGYENCHELIQQYNKGKLKLQPGCN--------AAQT 744 Query: 693 VSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAK--- 749 + + L + E+ NS +M+ G++GS I Q+ G + Sbjct: 745 LEAEITGVLNKIRETTANVCMEELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGR 804 Query: 750 --PDGSI---------------IETPITANFREGLNVLQYFISTHGARKGLADTALKTAN 792 PDG I + + ++F GL ++F T G R+GL DTA+KTA+ Sbjct: 805 RAPDGFIDRTLPHFPRKSKTPDAKGFVASSFYTGLTATEFFFHTMGGREGLVDTAVKTAD 864 Query: 793 SGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPG 852 +GY++RRL+ +DL + D+ + + + G D +P R Sbjct: 865 TGYMSRRLMKALEDLSIQYDETVRNANGSIVQFLYGDDGMDPARMEGKDGFPLNFNRLFL 924 Query: 853 TADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKG 912 P + E S C F + + N Sbjct: 925 KVKATCPAGENASLSALQIEETVKRLKEHNTSAEGCSDAFK-TNLSGFLEECKEKFKNTR 983 Query: 913 EAIGVIAAQSIGEPGTQLTMR-TFHIGGAASR-----AAAESSIQVKNKGSIKLSNV--- 963 EA+G + + +GE + + +I G S+ S +QVK GSI+ +++ Sbjct: 984 EALG-LHGEHVGEENLDIQEKFAKNISGITSKQLQHVNTDHSHLQVKLAGSIRTNDLLNY 1042 Query: 964 -KSVVNSSGKLVITSRNTELKLIDEFGRTKESYKV------------------------- 997 K G+ ++ + E+ L + E+ +V Sbjct: 1043 RKKCRIQEGQAILQDKKKEI-LQARYQSITENLRVVSVMASQRGSCWFGVESKSFEILME 1101 Query: 998 -PYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGF 1034 G L G +V + ++ P V++ G Sbjct: 1102 QVKGRWLHVVVGVEVFEIQLWWDFAPWFFTVVSMGKGK 1139 Score = 168 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 87/545 (15%), Positives = 166/545 (30%), Gaps = 138/545 (25%) Query: 852 GTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGR---------D 902 + + L + + K+ + T+ R Sbjct: 1402 HKFHAIGLKIQTLESRSNGEICHRQRVKEKINYQLVDMTNDVEEQSSRKRLGVFLDTCIS 1461 Query: 903 LARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSN 962 + I G AIG I A SIGEPGTQ+T++TFH G AS + Sbjct: 1462 RYQLKRIEAGTAIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPR----------- 1510 Query: 963 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDP 1022 +K ++N + ++ L E ++ ++ G + G+ + V Sbjct: 1511 IKEIINGAKRISTPIITAAL----ECNNNVKTARMVKGRIERTTLGQVAKSIKIVLTSRL 1566 Query: 1023 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD 1082 + V ++ G + S +V +S R K + +K++D Sbjct: 1567 ALIAVALDMEGIQA---------------SQLSIDSNIVRESILRNRRIKLKQQHIKVLD 1611 Query: 1083 AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVA 1142 A +V G R Sbjct: 1612 AGKLEVHPQGD----------------------------------------------RST 1625 Query: 1143 DLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGE 1202 FE K + GI + + + D Y ++ V E Sbjct: 1626 IHFELHALKNLLPTVVVKGIETVER--------AVINKDNKVKYNLLVEGTGLQTVMGTE 1677 Query: 1203 RVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR 1262 V + ++ + G+ A + I+NE+Q G+ I Sbjct: 1678 GVIGRETT---SNHIIEVQQTLGIEAARKCIINEIQYTMASHGMSI-------------- 1720 Query: 1263 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLAT--ESFI 1320 + + + + + ++LGIT+ + +S + Sbjct: 1721 ------------------DIRHMMLLADLMT--------FRGEVLGITRFGIQKMDKSVL 1754 Query: 1321 SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPA 1380 ASF++T L A+V+G+ D++ G+ E +I+G + GTG + R+++ Sbjct: 1755 MLASFEKTADHLFNASVSGRDDKIEGVSECIIMGIPMQLGTGILKVRQRLQQVPELSYGL 1814 Query: 1381 APQVT 1385 P ++ Sbjct: 1815 DPIIS 1819 >UniRef50_B9PZ91 DNA-directed RNA polymerase n=3 Tax=Toxoplasma gondii RepID=B9PZ91_TOXGO Length = 1747 Score = 682 bits (1759), Expect = 0.0, Method: Composition-based stats. Identities = 183/909 (20%), Positives = 336/909 (36%), Gaps = 119/909 (13%) Query: 17 FDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYK 76 DA++ + S + I +S E+ E T P G+ R+ D Sbjct: 113 VDAVQFDVLSGEEISRYSEVEIHNREIYVNMTNTPHPYGVLDLRLGPNKSDSR------- 165 Query: 77 RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIE 136 C+ CG + Q G+++L +P H+ + K + + + ++ Sbjct: 166 --------CQTCGHTLLQCT---GHWGYMDLQAPVYHVGYFKYVLQILYCICKTCAALLQ 214 Query: 137 RVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLK------ 190 E ++ + + L ++ ++A ++ F+ ++ ++K Sbjct: 215 PPEQKEKLLLRIRRHQSDPIVKRLLFKRTVEACKKVSKCFECGAPQGVLKRVVKPSLDQF 274 Query: 191 -SMDLEQECEQLREE-LNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPD 248 + + ++ R + + K L +RI+ E + PE ++L+ L V P Sbjct: 275 MKIRHVVKSKEGRAMTVEDDLDPLYVKNLLERIRPSECEILDIVSPEKLLLSRLLVPPSC 334 Query: 249 LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLD 308 +RP V + DL + + NN L+ + LQ L++ Sbjct: 335 IRPSVTIGEQGTTEDDLTCVLSDIAELNNVLQSHVQAGFHTNQFLGIWEFLQLQCTRLIN 394 Query: 309 NGRRGRAITGSNK---RPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQ 365 + ++K +P + + +KGK+GRFR NL GKRVD+SGR+VI+ P +++ Sbjct: 395 ADAPAVSQLLASKNISKPGRGICQRLKGKEGRFRGNLSGKRVDFSGRTVISPDPNANVYE 454 Query: 366 CGLPKKMALELFKPFIYGKLELRGLATTI------KAAKKMVER---------------- 403 +P+ +A L P ++ + L + V + Sbjct: 455 VVVPEWVAKRLTFPERVNRVNIEVLRAAVLKGCSDWPGACYVNKVDGSKCSLRYANRRQV 514 Query: 404 -EEAVVWDI-LDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADF 461 E + D+ + VL NR P+LHR+ I A ++ + + + VC+ YNADF Sbjct: 515 AENLQIGDVVERHLCNGDVVLFNRQPSLHRMSIMAHRARVMPWRTFRFNECVCSPYNADF 574 Query: 462 DGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAK 521 DGD+M +H+P T EA+ EA LM NN+++P NGEP+I +QD + Y +T V Sbjct: 575 DGDEMNLHLPQTHEARAEALYLMGVVNNLVTPKNGEPLIAATQDFLSSSYMLTHKDVFLT 634 Query: 522 GEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWM 581 + L Y + S I + + G+ V L+ ++ Sbjct: 635 RDQFCLICS------YFTDGLSRVDLPPPTILKPVELWTGKQVISVLLRPNRNSFVMVNF 688 Query: 582 IVPK----------------------------GLPYSIVNQALGKKAISKMLNTCYRILG 613 + + L + + + A + R Sbjct: 689 QLKEREFSAARIPPGEAPFMCPSDAYVIFRHSELVAGCIGKKVLGDAKFGLFFHLIRDNS 748 Query: 614 LKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPE----KKHEIISEAEAEVAEIQEQFQ 669 +I + A G ++GIDD+ K +I++ VA+ + ++ Sbjct: 749 PAQAAACMGRIAKLSARWFANRGMTIGIDDVTPSPTLLAAKKDILNHGYNLVAQEIQMYK 808 Query: 670 SGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSG 729 G + + K+++D+L+ E N +M +SG Sbjct: 809 KGALQPHPGC-----TLEQTLEVRVKSILDDLRNE---AGKACNRVLHPLNKPLIMFNSG 860 Query: 730 ARGSAAQIRQLAGMRGLMAKPDGSI--------------------IETPITANFREGLNV 769 A+G+ I Q+ G I + ++F GL Sbjct: 861 AKGALINIAQMIACVGQQNVSGQRIQNGFVSRTLPHFPLNCRDAKSRGFVASSFYSGLQP 920 Query: 770 LQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGG 829 ++F T R+GL DTA+KTA +GY+ RRL+ +DL + D+ + + G Sbjct: 921 DEFFFHTMSGREGLVDTAVKTAETGYMQRRLMKALEDLSIRYDNSVRTSDGQIVQFVYGD 980 Query: 830 DVKEPLRDR 838 D P Sbjct: 981 DGLNPAMME 989 Score = 180 bits (455), Expect = 4e-43, Method: Composition-based stats. Identities = 69/469 (14%), Positives = 147/469 (31%), Gaps = 119/469 (25%) Query: 901 RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL 960 I GEA+G + AQSIGEPGTQ+T++TFH G AS + Sbjct: 1369 WRKYVKAISEAGEAVGAMGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPR--------- 1419 Query: 961 SNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANW 1020 +K ++N++ K+ T + ++ +Y V + ++ Sbjct: 1420 --IKEIINAAQKI-----QTPIIVVPLVNDEDYNYAV------MVKNR---IEKTLLSEC 1463 Query: 1021 DPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKI 1080 + V ++ +D TI + ++ + + + + +++I Sbjct: 1464 CSYIKEVYAPDGAWLVVK--LDQHTIRKLFLDINANTVKDAILRQTAVNKVRITKNSVEI 1521 Query: 1081 VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPR 1140 ++ +P Sbjct: 1522 INE------------WKVRVMPPGGN---------------------------------- 1535 Query: 1141 VADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE 1200 F+ + K + + G + ++ Y + + +V Sbjct: 1536 -QIFFQLQALKLGLLNIVLCGHKDVKRGVIKCEQVEQPDKTKKTVYGLAVEGYGLRDVMG 1594 Query: 1201 GERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM 1260 + V+ ++ ++ G+ A I++E++ + I+ +H+ ++ M Sbjct: 1595 TQGVKALQAT---SNHVMEVAQILGIEAARAVIISEIRKCMDAYSMDIDCRHMTLLGDVM 1651 Query: 1261 LRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLAT--ES 1318 + ++LGI + + S Sbjct: 1652 T----------------------------------------FRGEVLGINRFGIQKMRAS 1671 Query: 1319 FISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQ 1367 + ASF+ET L EAAV + D ++G+ E +I+G+ + GTG Sbjct: 1672 TLMLASFEETNEHLFEAAVHHRADPVKGVSECIIMGKQVSLGTGSFDLL 1720 >UniRef50_A5DCV3 DNA-directed RNA polymerase II subunit RPB1 (Fragments) n=110 Tax=Eukaryota RepID=RPB1_PICGU Length = 1579 Score = 681 bits (1756), Expect = 0.0, Method: Composition-based stats. Identities = 268/1437 (18%), Positives = 501/1437 (34%), Gaps = 243/1437 (16%) Query: 6 KFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPV 65 +F + ++ L SP+ +R+ S +++ PET++ T +P GL R+ Sbjct: 4 QFPHSSAPLRSVKEVQFGLLSPEEVRAISVAKIEYPETMDQATKRPREGGLNDPRLGSID 63 Query: 66 KDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWF-------LK 118 ++++ C+ CG ++ + GHIELA P HI F + Sbjct: 64 RNFK---------------CQTCGEDMAECP---GHFGHIELAKPVFHIGFIAKIKKVCE 105 Query: 119 SLPSRIGLLL-DMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGD-EF 176 + G LL D + + + + NL + +++ E L E + + Sbjct: 106 CVCMHCGKLLLDESNPAMAQAIRIRDPKKRFNAVWNLCKGKMICEADVLQDDGEGNEPKR 165 Query: 177 DAKMGAEAIQALLKS------------MDLEQECEQLREELNETNSETKRKKLTKRIKLL 224 ++ G Q +++ + ++ + R L + K + + Sbjct: 166 TSRGGCGHTQPVVRKDGLKLWGTWKQNKNYDETEQPERRLLTPSEILNVFKHINSEDCVR 225 Query: 225 EAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLD 284 F + +PEWM++TVLPV PP +RP + + DL VI N ++RL Sbjct: 226 LGFNEDYARPEWMLITVLPVPPPPVRPSIAFNDTARGEDDLTFKLADVIKANINVQRLEL 285 Query: 285 LAAPDIIVRNEKRMLQEAVDALLDNGRRGRAIT-GSNKRPLKSLADMIKGKQGRFRQNLL 343 +P ++ + +LQ V +DN G+ RP+KS+ +KGK+GR R NL+ Sbjct: 286 DGSPQHVISEFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLM 345 Query: 344 GKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVER 403 GKRVD+S R+VI+ P L L Q G+P +A L P I + L ++ Sbjct: 346 GKRVDFSARTVISGDPNLDLDQVGVPISIARTLTYPEIVTPYNIHRLTEYVRNGPNEHPG 405 Query: 404 EEAVV-----------------------WDILDEVIREHPVLLNRAPTLHRLGIQAFEPV 440 + V+ W + ++ + PVL NR P+LH++ + Sbjct: 406 AKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMCHRVK 465 Query: 441 LIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPII 500 ++ +L+ V + YNADFDGD+M +HVP + E + E + I+SP + +P++ Sbjct: 466 VMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSEICAVPLQIVSPQSNKPVM 525 Query: 501 VPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDAN 560 QD + G+ MT + + + ++ + + D + Sbjct: 526 GIVQDTLCGVRKMTLRDIFIEYDQVM------------------------NMLYWIPDWD 561 Query: 561 GELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIF 620 G ++ +LKD + ++ A + I + G + F Sbjct: 562 G-VIPPMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQQI---------VEGKRIPFGF 611 Query: 621 ADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYN 680 AD+ + + D PE K ++ + G +T E + Sbjct: 612 ADR---------SLPHFT---KDDYSPESKG-----------FVENSYLRG-LTPQEFFF 647 Query: 681 KVIDIWAAANDRVSKAMMDNLQTETVINR---DGQEEKQVSFNSIYMMADSGARGSAAQI 737 + D K ++ + NS+ + Sbjct: 648 HAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFVYGEDGVDG 707 Query: 738 RQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLT 797 Q+ + + +R L + I R L ++ + L Sbjct: 708 TQVES----QSVDVIPGTDESFERRYRVDLLDPEKCI-----RDSLLESGKEVRGDVNLQ 758 Query: 798 RRLVDVAQDLVVTEDD----CGTHEGIMMTPVIEGGDVKEPLRDRVL--GRVTAEDVLKP 851 R L + + L C T+ P+ ++ GR A D+ Sbjct: 759 RVLDEEYEQLCNDRRYLREVCFTNGDYT-WPLPVNLRRIIQNAQQLFHGGRHKASDLRLE 817 Query: 852 GTADILVPRNTLL------------HEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCY 899 + + L ++ LL + V + V + F + + Sbjct: 818 EIVEGVKELCKKLLVLRGDSPLVKESQENATLLFQCLVRSRLATRRVIEE--FRLNRMSF 875 Query: 900 GRDL------ARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVK 953 + + +++ GE +GVIAAQSIGEP TQ+T+ TFH G +S+ + Sbjct: 876 EWAMGEIETQFQKSLVHPGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPR-- 933 Query: 954 NKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAG 1013 +K ++N + + + L+ + E KV A+ A Sbjct: 934 ---------LKEILNVAKNIKTPALTVYLE--KDIAADIEKAKVVQSAIEHTTLKNVTAS 982 Query: 1014 GETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKD 1073 E + DP + + + + + D + + L L + + Sbjct: 983 TEIFYDPDPRSTVLEEDYDTVEAYFAIPDEKVEESIEKQSPWLLRLELDRAKMLDKQLTM 1042 Query: 1074 LRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQ----LEDGVQISSGDTLARIPQESG 1129 + A KI G D+ + +D A + +V+ L++ V L RI Sbjct: 1043 AQVAEKISQNFGEDLFVIWSDDTADKLIIRCRVVRDPKSLDEDVDAEEDQILKRIEAHML 1102 Query: 1130 GTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEM 1189 + + G+ + +F + + + +E Sbjct: 1103 ESISL-RGIQGITRVFMMQH-----------------------KLSLPDETGEFKQGQEW 1138 Query: 1190 IPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKIN 1249 + + +N+ + V D +IL + G+ A + E+ +V G +N Sbjct: 1139 VLETDGVNLADVMAVPGVDAKRTYSNNFIEILSVLGIEATRSALFKEILNVIAFDGSYVN 1198 Query: 1250 DKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGI 1309 +H+ ++V M L+ I Sbjct: 1199 YRHMALLVDVMT----------------------------------------ARGHLMAI 1218 Query: 1310 TKASLAT--ESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 T+ + + SF+ET +L EA A + D+ G+ ENV++G+L P GTG Sbjct: 1219 TRHGINRADTGALMRCSFEETVEILLEAGAAAELDDCHGISENVVLGQLAPLGTGAF 1275 >UniRef50_Q9AVW8 DNA-directed RNA polymerase n=2 Tax=Cryptophyta RepID=Q9AVW8_GUITH Length = 1473 Score = 669 bits (1726), Expect = 0.0, Method: Composition-based stats. Identities = 264/1511 (17%), Positives = 503/1511 (33%), Gaps = 210/1511 (13%) Query: 13 KTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLC 72 + + I+ + SPD I S +V T P+ GL R+ K++ Sbjct: 4 EEKLIKLIQFGILSPDEILKLSVVQVDSDMTF--EHNLPKLGGLLDQRMGTVDKEF---- 57 Query: 73 GKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPL 132 C ++ GHI L P H F+ + + + Sbjct: 58 -----------FCTTDMGSFLESP---GYFGHISLNRPVFHEGFMDYVLRILRCIDHTTS 103 Query: 133 RDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAE------AIQ 186 + I + + + NL ++ + + L A ++F+ + E +IQ Sbjct: 104 KLI--INENSQKIKNVLKIKNLSQRLNIISKLCLTACNLKKNKFNNFLKDEIIEKRISIQ 161 Query: 187 ALLKSMDLEQECE-------QLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMIL 239 + + ++ K+T ++P+WMI+ Sbjct: 162 PKYSRDGWCIVAKFDSRITSEPTRLVSAERIHEIFVKITDEACEKLGLNPKLSRPDWMII 221 Query: 240 TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRML 299 TVLPV PP +RP V + A DL +I N L++ + P ++ + +L Sbjct: 222 TVLPVPPPTIRPSVKFETLLRAEDDLTYKLGDIIRTNKILRKAIFSCLPSQLINEQINLL 281 Query: 300 QEAVDALLDNGRRGRAIT-GSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVG 358 Q + + ++N A + + RP+KS+ ++GK+GR R NL+GKRVD+S R+VIT Sbjct: 282 QYHIGSYMNNSVPSLAKSLQKSGRPIKSIKQRLQGKEGRLRGNLMGKRVDFSARTVITPD 341 Query: 359 PYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAA-------KKMVEREEAVV--- 408 P ++L + G+P +A+ L P I + + + K ++ + + Sbjct: 342 PNIKLDELGVPLSIAMNLTFPEIVTSFNIEYMKFLLYNGPYKHPGAKYLIRNDNNRIDLR 401 Query: 409 -------------WDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCA 455 + + + VL NR P+LH++ + +++ +L+ + Sbjct: 402 YVKYLSNINLENGYCVERHLQNGDLVLFNRQPSLHKMSMMGHIVKVMKFSTFRLNLSATS 461 Query: 456 AYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT- 514 YNADFDGD+M +H P +E++ E + L+M +N I+SP +PI+ QD +LG +T Sbjct: 462 PYNADFDGDEMNLHFPQNVESKSELKNLLMVSNCIVSPQGNKPIMGIVQDSLLGSMLITE 521 Query: 515 RDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTV 574 + +K E M E L L A K RI K ++ +L T + Sbjct: 522 KGNFLSKYEIMAYLNLIEGYSL----NIPLPAIYKPRILWTGKQLISTIIPCINLSRTCI 577 Query: 575 GRAI-----------LWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQ 623 +I L ++++ +++ ++ +G F Sbjct: 578 SHPEHEKAYVTSGDTRVIIFQGQLLSGMIDKRTIGATSGGLIHVIWKDIGPSACSYFISN 637 Query: 624 IMYTGFAYAARSGASVGIDDMVIPEKKHE----IISEAEAEVAEIQEQFQSGLVTAGERY 679 + +G SVGI D + + + II A+ V + ++ S Sbjct: 638 FQIIVNNWLQLNGFSVGIGDCIPTKMVKKDVSLIIKTAKLFVKKSIKRLLSKKFNGF--- 694 Query: 680 NKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQ 739 +N + + L + ++ S+N++ M SG++GS I Q Sbjct: 695 -----FNKDSNYNLENHLNKVLNNARDMAGSSAQKCLTSYNNLKKMIFSGSKGSLINISQ 749 Query: 740 LAGMRGLMAKPDGSI--------------------IETPITANFREGLNVLQYFISTHGA 779 + G I + ++ EGL ++F + G Sbjct: 750 IVACVGQQNVEGKRIPFGFRKRSLPHYHYKNFEPETRGFVVNSYIEGLFPDEFFFHSMGG 809 Query: 780 RKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPL---- 835 R+GL DTA+KT+ +GY+ RRL +D+VV D + + + G D + + Sbjct: 810 REGLIDTAIKTSETGYIQRRLSKSMEDIVVEYDFSVRNNQQEIISFLYGEDCFDAVYLEN 869 Query: 836 RDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVC 895 + LG+++ ++ P L + L S ++ + Sbjct: 870 QKIFLGKMSDIEMNMVYKVTQSSPCFGLAIDSSLLFLSNKSYNSKIANIEYNQLLKDREF 929 Query: 896 AHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNK 955 D +I +++ S+ + + S++ Sbjct: 930 LRKLMLDQNDINIPLPVNLDRIVSKASV-------LFKNHKNSSLINFKETIRSLKFLRN 982 Query: 956 GSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYG--------------- 1000 ++L N K N N + L+ + R+ S K+ Y Sbjct: 983 YFLELINFKISFNQKKSDNKQLINRDNFLLAIYIRSSLSLKIIYTKFNLNQHALNWIVNE 1042 Query: 1001 -----AVLAKGDGEQV--AGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDEL 1053 GE V +++ +G + + D Sbjct: 1043 ICLSIRKSLIQPGEMVGTISAQSIGQPATQMTLNTFHFAGVSAKNVTLGVPRLKEIIDIQ 1102 Query: 1054 TGLSSLVV-----LDSAERTAGGKDLRPALKIVDAQGN--------------DVLIPGTD 1094 + S + + K ++ +++ V + Sbjct: 1103 KNIKSPSLTIFLHKKCSNDPRKVKKIQESIESVRLNRISNYFEIIYDPDFFFSISKCNRI 1162 Query: 1095 MPAQY-FLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVAD-----LFEAR 1148 + Y +P + I L+ I L E G + + L A Sbjct: 1163 LVKNYMEIPDEDINFLQASSWILKLKLLTEEFVEKGLFSNYIIETIKKKIKPIPFLIIAS 1222 Query: 1149 RPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERG- 1207 +I + I ++ + K V E +E Sbjct: 1223 DENSGSIEFLVRFIWPEFINNYNSEKIEKLFSRSNANTFFEYIKRANQKVSENLFLEPNY 1282 Query: 1208 -----DVISDGPEAPHDILRLRGVHAVTRYIV-----------NEVQDVYRLQGVK---- 1247 + P+ +L ++ I+ N + V +GV Sbjct: 1283 FKKIKHYFYNYNLKPYGSQKLTKLYPRRIDIIEPEPNQSGKLKNNFEFVLETEGVDLRFV 1342 Query: 1248 -----INDKH---------IEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELE 1293 I+ ++V+ + RK I + +G V Y + Sbjct: 1343 MNYNGIDYSRCTTNDLLESLKVLGIEATRKILIQELRNLISFDGSYVNYRHLCTLVD--- 1399 Query: 1294 ANGKVGATYSRDLLGITKASLAT--ESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 T+ L+ I + + I+ ++F+ET + E+AV G D LRG+ + Sbjct: 1400 -----LITFRGSLMSINRHGINKCNSGPIAKSTFEETVDIFYESAVFGLNDNLRGVSAQI 1454 Query: 1352 IVGRLIPAGTG 1362 + G + GTG Sbjct: 1455 MTGMVPKIGTG 1465 >UniRef50_UPI0001C41F18 DNA-directed RNA polymerase subunit A'' RpoA1 n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41F18 Length = 926 Score = 666 bits (1718), Expect = 0.0, Method: Composition-based stats. Identities = 220/938 (23%), Positives = 366/938 (39%), Gaps = 138/938 (14%) Query: 25 ASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVI 84 SPD IR S + +P+T + + P +GL +R+ + + Sbjct: 1 MSPDQIREMSVVNITRPDTYDEDGY-PIENGLMDSRLG---------------VIDPSLK 44 Query: 85 CEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESY 144 C CG + + + G I+LA P H+ F + +L + RVL E Sbjct: 45 CRTCGEKGGECQ---GHFGMIDLARPVIHVGFGDDIH----KILRSTCNECGRVLLDEEE 97 Query: 145 VVIEGGMTNLERQQILTEEQYLDALEEFGDEFDA---KMGAEAIQALLKSMDLEQECEQL 201 + N ++ + E + + + A A Q +K + E Sbjct: 98 IEEYTEKLNELQEAGESTEDLIKEVYKICKAKKAKDVCPHCGAEQEDIKIVKPIGIIEVR 157 Query: 202 RE--------------------ELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTV 241 +E +L + K +++ + +PEWM+LTV Sbjct: 158 KEYDENGELLTDANGNPVTTDYDLTASEVREKLERIPDEDAYVLGVNPEVARPEWMVLTV 217 Query: 242 LPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQE 301 LPV P +RP + LD G + DL ++ N RL +D AP +IV + ++LQ Sbjct: 218 LPVPPVTVRPSITLDTGERSEDDLTHKLVDILRINQRLIENMDAGAPQLIVEDLWQLLQY 277 Query: 302 AVDALLDNGRRGRAI-TGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360 V DN G + RPLK+LA +KGK+GRFR NL GKRV++S R+VI+ P Sbjct: 278 HVTTYFDNEASGVPPARHRSGRPLKTLAQRLKGKEGRFRSNLSGKRVNFSARTVISPDPN 337 Query: 361 LRLHQCGLPKKMALELFKPFIYGKLELRGLATTI------KAAKKMVEREEAVVWD---- 410 + +++ G+P+ +A E+ P + + L I V + + D Sbjct: 338 ISINEVGVPEMIAKEVTVPTYVNEWNIEDLREAILNGPDAHPGANYVRKYNDRIKDYNKV 397 Query: 411 -------------------ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHP 451 ++ + VL NR P+LHR+ + A E ++ K +L+ Sbjct: 398 RVLDSNKETVAEMLTCGDIVMRHLKDGDIVLFNRQPSLHRMSMMAHEVRVLPYKTFRLNL 457 Query: 452 LVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLY 511 VC YNADFDGD+M +HV T E++ EA++LM +ILSP G PII D + G Y Sbjct: 458 CVCPPYNADFDGDEMNMHVFQTDESRAEAKSLMRVQEHILSPRFGGPIIGAIHDHISGAY 517 Query: 512 YMTRDCVNAKGEG--------MVLTGPKEAERLYRSGLASLHARVKVRITEYE---KDAN 560 +TRD + +L P + ++K + + +D Sbjct: 518 LLTRDGFTVPEDDAFQMIRKSHLLKCPYDEYLKRDLDEKEYKQQIKEYNEKLKRKHRDWT 577 Query: 561 GELVAKTSLKDT-------------------TVGRAILWMIVPKGLPYSIVNQALGKKAI 601 G+ + L T +I L + +++A Sbjct: 578 GKELFSLLLPSTLNMNYRAEICRKCEECMAEACEYDSYVVIKDGQLTHGAIDEAAYGSFS 637 Query: 602 SKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEII----SEA 657 K+L+ + G F D+ ++G + +D IPE+ E+I A Sbjct: 638 GKILDNIVKEYGPAYAKEFLDRSTDLAICGIMKTGITTSTNDEEIPEEAIEVIDAHLDNA 697 Query: 658 EAEVAEIQEQFQSGLVTAGER-------YNKVIDIWAAANDRVSKAMMDNLQTETVINRD 710 E +V ++ E ++ G + +++ + A D L D Sbjct: 698 EQKVDKLIETYEMGELQPLPGRSAEETLEMRIVQVLGEARDAAGDIAAGYLTMGKQSPDD 757 Query: 711 GQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIE-------------- 756 + N +MA +GAR S + Q+ G + G I Sbjct: 758 SYDHVMAVENHSVVMAKTGARASMLNLAQITACVGQQSVRGGRITRGYLARPLPHFRKHE 817 Query: 757 ------TPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVT 810 + ++++EGL+ +++F G R+GL DTA++TA SGY+ RRLV+ +DL V Sbjct: 818 LGARAKGFVHSSYKEGLDPVEFFFHAMGGREGLVDTAIRTAQSGYMQRRLVNALEDLNVR 877 Query: 811 EDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDV 848 D T + + G D +P + G+V D Sbjct: 878 SDGLVTDNKNQVIQTVFGEDGIDPAKSD-FGKVANLDK 914 >UniRef50_UPI000179161A PREDICTED: similar to DNA-directed RNA polymerase I largest subunit n=1 Tax=Acyrthosiphon pisum RepID=UPI000179161A Length = 1606 Score = 666 bits (1718), Expect = 0.0, Method: Composition-based stats. Identities = 281/1670 (16%), Positives = 507/1670 (30%), Gaps = 376/1670 (22%) Query: 7 FLKAQTKTEEFDAI--KIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGP 64 F + F I + S + ++ S + + +P + GL+ +R+ Sbjct: 2 FYHDFYNVDPFKPISMEFNTFSSEEVKKLSVARIDSLISFTP-LGEPVQGGLYDSRLG-- 58 Query: 65 VKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRI 124 + C C GHIEL P + F ++ Sbjct: 59 ------------SIHMSSGKCSTCNQNSVLCS---GHFGHIELPCPVINPIFTTAVIH-- 101 Query: 125 GLLLDMPLRDIERVLY-----------------------FESYVVIEGGMTNLERQQILT 161 +L + VL E I G + ER+ + Sbjct: 102 --ILKISCLSCYCVLLPRESTILLAAQLKLLDNGQLTHAHELATEINGLCEDDERKLSVD 159 Query: 162 EEQ-----------------YLDALEEFGDEFDA--------KMGAEAIQALLKSMD--- 193 E + Y+ +E F A + G + L ++ Sbjct: 160 ELETFISLYLKERLQENNGSYVKCADEIRQTFIAETINQVARRTGCMHCKQPLSTISKSF 219 Query: 194 ---------LEQECEQLREELNETNSETKRKKLTKRIK-------LLEAFVQSGNKPEWM 237 ++ ++++E L + ++L + K + A ++ + Sbjct: 220 STITISQASKSKKEKKIKEYLFPADIREHMRQLWVKEKHFISALLPVLAGLKIEYPTDVC 279 Query: 238 ILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL--------------- 282 +T + V P +LRP + + G S N Y+ ++ ++ + Sbjct: 280 FMTEILVTPSNLRPNLMVKGK-LVESPRNSTYKSILREAKVIQYIWLLQDQKEGQEISSE 338 Query: 283 -------LDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQ 335 V+ LQ VDALLD R+ ++ P L +++ K Sbjct: 339 ITELVNDSQGKDSIEKVQIGMHNLQMCVDALLDGNL-FRSYNNKDQAPRIGLKQLLEKKS 397 Query: 336 GRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLA---- 391 G RQN++GKRVDY RSVIT PYL + G+P + A +L P +GL Sbjct: 398 GIIRQNMMGKRVDYFARSVITPDPYLDTDEIGIPVEFAKKLTYPVAVTDWNNKGLHGVVL 457 Query: 392 --TTIKAAKKMVEREEAVVW----------------------------DILDEVIREHPV 421 M+E + +V + VI + Sbjct: 458 NGPNHYPGANMIETDAGIVKWLSATNKSRREALSKTLFYKGPNSRGPQIVHRHVIDGDMM 517 Query: 422 LLNRAPTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480 L+NR P+LH+ I A +++G K ++LH C AYNADFDGD+M H+P + A+ EA Sbjct: 518 LVNRQPSLHKPSIMAHRVKVLKGEKTLRLHYANCKAYNADFDGDEMNAHLPQSELAKCEA 577 Query: 481 RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVLTGPKEAERLYRS 539 + + + L P +G P+ QD ++ MT R + E M + R+ Sbjct: 578 KEIASAVYQYLVPRDGTPLSGLIQDHIISSVRMTVRGHFFTRREYMHFV-YQALSSFDRA 636 Query: 540 GLASLHARVKVRITEYEKDANGELV---------------AKTSLKDTTVGRA------- 577 A +K + K L+ +K+ L+ Sbjct: 637 IKTVPPAIIKPVMLWSGKQIISTLIINLTPLNQKTYINLMSKSKLEQKCWRNPNNYEYPD 696 Query: 578 ---ILWMIVPKG-LPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAA 633 IV G L I+++ + +++ Y + G K + Y Sbjct: 697 LLSEFNFIVRNGNLLSGILDKNHIGASTYSLVHCFYELYGGKYSAQLLSAFSKLFTVYLQ 756 Query: 634 RSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQF------------QSGLVTAGERYNK 681 ++G++D+++ EK + A E + + E Y+K Sbjct: 757 CDAFTLGVEDILVTEKADHLRQTAIDESKTAGTLAAQESLGIEYMGEDAMNIKLAESYSK 816 Query: 682 VIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLA 741 + K + T + N++ +M SGA+GS Q++ Sbjct: 817 SSHFPVLVDRNYKKHLQPFTNKITRACIPKGLLQPFPNNNLQLMVQSGAKGSTVNTIQIS 876 Query: 742 GMRGLM--------------AKPDGSIIE------TPITANFREGLNVLQYFISTHGARK 781 G + P + I + F G+ ++F R+ Sbjct: 877 CCLGQIELEGKRPPMMISGRTLPSFPPFDTLPKAGGFIGSRFMTGIQPQEFFFHCMAGRE 936 Query: 782 GLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVL- 840 GL DTA+KT+ SGYL R LV + L+V D + + G D E + Sbjct: 937 GLIDTAVKTSRSGYLQRCLVKHLESLIVNYDMTVRDSNGSIVQYLYGEDGLEVTKSSFFK 996 Query: 841 --------GRVT----------------AEDVLKPGTADILVPRNTLLHEQWCDLLEENS 876 G V +D L+ + +++ +N ++ ++ S Sbjct: 997 EKQFDFLAGNVNSFKALKKIRNDECYKELDDKLEEIKSAMIIKKNISRQSEFLSWCKQTS 1056 Query: 877 VDAVKVRSVVS---CDTDFGVCAHCYGRDLARGH-----------------------IIN 910 K + C D +C Y + Sbjct: 1057 KVKNKKHPKIKNGRCVQDIKICNKWYEINEDVKKSNGLNDNDKQIAKESIRLKAMAATAA 1116 Query: 911 KGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKS----- 965 GE +G IAAQS+GEP TQ+T+ TFH G +++ + +K+ Sbjct: 1117 AGEPVGCIAAQSVGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMMATKTIKTPSMEI 1176 Query: 966 -------VVNSSGKLVITSRNTELKLIDEFGRTKESYKV------------------PYG 1000 V N + L LK + + +E + Y Sbjct: 1177 PFFQSENVKNEADFLRKLMTKISLKDVLSKVQVREKVMLNPIRRMCYDLTLHLLPHRCYE 1236 Query: 1001 AVLAKGDGEQVAGGETVANWDPHTMPVIT---------EVSGFVRFTDMIDGQTITRQTD 1051 + + + + M V + + D Sbjct: 1237 STTHVTPKAVMRFIKNSFSESLKKMFVKNLSKNFSGELISEQTKNAIKINREKNNDNDED 1296 Query: 1052 ELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLP-GKAIVQLE 1110 L S + + + A D P ++ Sbjct: 1297 ALLDESEPQETKAKNQVDSDSESEAGEFDSAAMKRKAQTEEYDYEKDEDDPMSDEEAEIN 1356 Query: 1111 DGV--------------QISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAIL 1156 D +I + I E +D + + + K+P Sbjct: 1357 DKQSECDDSPNIESQPIKIKHNTSDNEINIEDDNIEDFVNNKDYSQIVIDVKCGKKPYTF 1416 Query: 1157 AEI-------------SGIVS------FGKETKGKRRLVITPVDGSDPYEEMIPKWRQLN 1197 A I +G++ E G R ++T D + + Sbjct: 1417 ANIQVSIPLEYKRIDLTGLIKDLMGRVIIHEIPGINRAILTEEDDKIILKTEGSRGVAEL 1476 Query: 1198 VFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIV 1257 ++ + + +L G+ A R I+ EV++V+++ G+ ++ +H+ +I Sbjct: 1477 FRFANILDLNSLYCN---DIQMMLNTYGIEAANRVIIKEVKNVFKVYGINVDTRHLSLIA 1533 Query: 1258 RQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATE 1317 M +GK A + G Sbjct: 1534 DYMT--------------------------------YDGKYKALNRVGMNG-------CP 1554 Query: 1318 SFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQ 1367 S + SF+ T L ++ V G +D L +I+G+ G+G Sbjct: 1555 SPLQQMSFESTLNYLKKSTVRGLKDNLVSPSSTLIIGQQAQIGSGLVKLL 1604 >UniRef50_B1AIH6 DNA-directed RNA polymerase subunit beta' n=15 Tax=Ureaplasma RepID=RPOC_UREP2 Length = 1305 Score = 661 bits (1705), Expect = 0.0, Method: Composition-based stats. Identities = 358/1062 (33%), Positives = 565/1062 (53%), Gaps = 97/1062 (9%) Query: 129 DMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQAL 188 D + E ++ Y + L+ I + + A E +GAEAI+ L Sbjct: 185 DELNHEREALIQDFDYRLAVTYDQMLKDSNIPFSVKDVMAFIEKHTGVRFGIGAEAIREL 244 Query: 189 LKSMDLEQECEQLREELNETNS--ETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLP 246 L+ ++LE+E E++++ + + + + K K+L +R++ + SG+KPEWM++T +PV P Sbjct: 245 LEKLNLEEEHEKIKQAIQNSPNAYDQKTKRLLRRLECVRWIKDSGSKPEWMVMTRIPVTP 304 Query: 247 PDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDAL 306 + RP++ LDGGRF TSD N+ YR++I RN RLK++ AP+I++ NEKR+LQEAVD+L Sbjct: 305 SETRPIISLDGGRFTTSDTNNFYRKIIIRNERLKQMQATDAPEILLDNEKRLLQEAVDSL 364 Query: 307 LDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQC 366 DN R + + G +KRPLKSL++ +KGKQG FRQNLLGKRVDYSGRSVI VGP L++++ Sbjct: 365 FDNNSRKKPVVGKDKRPLKSLSNHLKGKQGLFRQNLLGKRVDYSGRSVIVVGPELKMYEV 424 Query: 367 GLPKKMALELFKPFIYGKLELRG---------LATTIKAAKKMVEREEAVVWDILDEVIR 417 G+P M L+LF+P+I +L + + IK A++ + ++ +W ++++VI+ Sbjct: 425 GIPALMILKLFRPYIISELIRKRDELGNEIQPICANIKLAEQKILAQDNEIWPVVEKVIK 484 Query: 418 EHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQ 477 + PV+LNRAPTLHRLGIQAFEP +++GKAI+LHPLV A+NADFDGDQMAVH+PL+ EA Sbjct: 485 QRPVILNRAPTLHRLGIQAFEPKMVDGKAIRLHPLVTTAFNADFDGDQMAVHIPLSKEAV 544 Query: 478 LEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMV----------- 526 EAR++++++ +IL P +G+PII P+QD++LG+YY+T++ E M+ Sbjct: 545 AEARSILLASWHILGPKDGKPIITPTQDMILGIYYLTKEKFPQVIEEMMAKDPTQARVEF 604 Query: 527 ------LTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILW 580 + EA R Y+ ++ + + K N + +K + TTVG+ I Sbjct: 605 INNFHIFSTQDEAIRAYKLKTIRINDVIGI----TTKAFNNKTFSKEGILVTTVGKIIFN 660 Query: 581 MIVP----------------------------KGLPYSIVNQALGKKAISKMLNTCYRIL 612 P L + + L KK +S +++ Y++ Sbjct: 661 QAFPVNFPYINDVKNLYGENQFEIIGMHESILDYLKAYNLKEPLTKKTLSTVIDYLYKVS 720 Query: 613 GLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGL 672 ++ D+I GF Y+ S S+ D+ ++K+E E + V++++E + G Sbjct: 721 EIEVVPQTMDKIKALGFKYSMISATSISAFDIPSYDQKYEYFKETDELVSKLREFYLDGK 780 Query: 673 VTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARG 732 +T ERY KV+ W+ D+V+ + + + N I +MA SGARG Sbjct: 781 LTDDERYTKVVQAWSQTKDKVTHDIEKLINSNE-----------YKDNPIVIMAKSGARG 829 Query: 733 SAAQIRQLAGMRGLMAKPD-----------GSIIETPITANFREGLNVLQYFISTHGARK 781 + + QLAGMRGLM+K IE PI +F EGL+V +YF S+ GARK Sbjct: 830 NTSNFTQLAGMRGLMSKSYNYDQKNNNGVIKDTIEIPIKHSFIEGLSVSEYFNSSFGARK 889 Query: 782 GLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDV--KEPLRDRV 839 G+ DTA+KTA SGY+TR+LVD Q +V+ + DCGT EGI++ + D E L+DR+ Sbjct: 890 GMTDTAMKTAKSGYMTRKLVDSTQAVVIKDHDCGTKEGIIVREIRNTKDNTSIESLKDRI 949 Query: 840 LGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCY 899 +GR + + +++ + L+ + ++++ + + V+VRS + C + +GVC C+ Sbjct: 950 VGRYSINTIYD-TKNKLIIESDKLITSEIANIIQNSGIREVEVRSPLHCASLYGVCQKCF 1008 Query: 900 GRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASR-AAAESSIQVK--NKG 956 G DL+ +I G AIGVIAAQSIGEPGTQLTMRTFH GG A + ++K Sbjct: 1009 GLDLSTNKLIETGTAIGVIAAQSIGEPGTQLTMRTFHTGGVAGDTNITQGFERIKQLFDC 1068 Query: 957 SIKLSNVKSVVNSSGKLVITSR-----NTELKLIDEFGRTKESYKVPYGAVLAKGDGEQV 1011 N K+V++ V N +I +Y AVL G+++ Sbjct: 1069 IQPQENEKAVISQVKGTVERIEKDSNTNGYNVVIKYNKDNYVNYPTRSNAVLRVKTGDEI 1128 Query: 1012 AGGETVAN--WDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTA 1069 G+ + D + + + + + Q E++ V++ Sbjct: 1129 IAGQKITEGSIDVNDLLKYAGIENVRHYIIKEVQKVYRMQGIEISDKYIEVIISQLTNKI 1188 Query: 1070 GGKDLRPALKIVDA--QGNDVLIPGTDMPAQYFLPGKAIVQL 1109 + + V N+ +M P AI Q+ Sbjct: 1189 TITNPGDSGLFVGETISINEFTEVAQNMLVNKKKPPSAINQV 1230 Score = 239 bits (609), Expect = 7e-61, Method: Composition-based stats. Identities = 99/362 (27%), Positives = 166/362 (45%), Gaps = 8/362 (2%) Query: 1017 VANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERT-AGGKDLR 1075 + N +T + R++ T + E L + + + + + ++R Sbjct: 933 IRNTKDNTSIESLKDRIVGRYSINTIYDTKNKLIIESDKLITSEIANIIQNSGIREVEVR 992 Query: 1076 PALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDTLARIPQESGGTK-- 1132 L G G D+ + + + I G L +GG Sbjct: 993 SPLHCASLYGVCQKCFGLDLSTNKLIETGTAIGVIAAQSIGEPGTQLTMRTFHTGGVAGD 1052 Query: 1133 -DITGGLPRVADLFEARRP--KEPAILAEISGIVS-FGKETKGKRRLVITPVDGSDPYEE 1188 +IT G R+ LF+ +P E A+++++ G V K++ V+ + + Sbjct: 1053 TNITQGFERIKQLFDCIQPQENEKAVISQVKGTVERIEKDSNTNGYNVVIKYNKDNYVNY 1112 Query: 1189 MIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKI 1248 L V G+ + G I++G +D+L+ G+ V YI+ EVQ VYR+QG++I Sbjct: 1113 PTRSNAVLRVKTGDEIIAGQKITEGSIDVNDLLKYAGIENVRHYIIKEVQKVYRMQGIEI 1172 Query: 1249 NDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLG 1308 +DK+IEVI+ Q+ K TI N G S GE + + + + N K + + G Sbjct: 1173 SDKYIEVIISQLTNKITITNPGDSGLFVGETISINEFTEVAQNMLVNKKKPPSAINQVFG 1232 Query: 1309 ITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD 1368 + A + SF+SAASFQ+T ++LT+AA ++D L GLKENVI+G LIPAGTG ++ Sbjct: 1233 LDHAPSKSGSFLSAASFQDTKKILTDAAARSQKDMLIGLKENVILGNLIPAGTGLKDVEE 1292 Query: 1369 RM 1370 + Sbjct: 1293 VI 1294 Score = 168 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 89/226 (39%), Positives = 139/226 (61%), Gaps = 9/226 (3%) Query: 15 EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74 + ++ I++ASP+ I +WS GE+ KPETINY++ KPE +GLF IFGP KDYEC CGK Sbjct: 4 KGIKSLTISIASPEQILNWSKGEITKPETINYKSLKPEPNGLFDESIFGPSKDYECYCGK 63 Query: 75 YKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSR--IGLLLDMPL 132 Y+++KH+G ICE+C VE+T++ VRRERMGHIELA+P AHIWF K LPS I LLLD+ Sbjct: 64 YRKVKHKGKICERCHVEITESIVRRERMGHIELAAPVAHIWFTKELPSPSKISLLLDITY 123 Query: 133 RDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDA---LEEFGDEFDAKMGAEAIQALL 189 +++++V+YF +Y+V++ G + + I +++ LD + IQ + Sbjct: 124 KEVDQVVYFVNYIVLDEGNNVYDGKSIFNKKEVLDLTSPKNSIRSRNKLRRTLRNIQERI 183 Query: 190 KS-MDLEQECEQLREELNETNSETKRKK---LTKRIKLLEAFVQSG 231 + ++ E+E + + + K + +K + AF++ Sbjct: 184 EDELNHEREALIQDFDYRLAVTYDQMLKDSNIPFSVKDVMAFIEKH 229 >UniRef50_B3RW43 DNA-directed RNA polymerase n=1 Tax=Trichoplax adhaerens RepID=B3RW43_TRIAD Length = 941 Score = 658 bits (1697), Expect = 0.0, Method: Composition-based stats. Identities = 202/1007 (20%), Positives = 348/1007 (34%), Gaps = 133/1007 (13%) Query: 4 LLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFK-PERDGLFCARIF 62 + + K ++ + L S + ++ + V T + P G+ R+ Sbjct: 2 VKEQFKDLDVAKKLSHVTFGLFSSNDVQRQAHIRVVSKNLYGEDTQRSPVSYGVLDRRMG 61 Query: 63 GPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPS 122 + CE C + G+++LA P H F K+ + Sbjct: 62 TS---------------SKNKSCETCRKGLADC---VGHYGYLDLALPVFHCGFYKATIT 103 Query: 123 RIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGA 182 + + + RVL + + R + + + + E + Sbjct: 104 ILQCIC----KKCSRVLLSPADYDQNLQIATRTRLGLQSRKALQKKVHEKCRKMAVCPSC 159 Query: 183 EAIQALLKSMDLEQECEQL-------------------------------------REEL 205 AI ++K + + +E L Sbjct: 160 GAINGIVKKAGSFKIIHEKHRLNKKLSSIAISQTQDLLQDAVESNKDLENFVASKSQEIL 219 Query: 206 NETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGR-FATSD 264 N ++ LL + +PE +I+ L V P +RP V D D Sbjct: 220 NPLLVLKLFSGMSDEDCLLVGMKPNNGRPEDLIIERLLVPPLCIRPSVMTDSQMGSNEDD 279 Query: 265 LNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPL 324 L +I ++ + R A I+ LQ V +++ G RP+ Sbjct: 280 LTMKLTEIILISDYINRSRQNGAKIQILMELWDNLQIHVSLYINSETSGLPYGSQPNRPI 339 Query: 325 KSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGK 384 + +KGK GRFR NL GKRVDYS R+VI+ P LR+ + +P +A+ L P + Sbjct: 340 RGFCQRLKGKSGRFRGNLSGKRVDYSTRTVISPDPNLRIDEVAIPYPVAMTLTYPQKVCR 399 Query: 385 LELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEG 444 +R L I V+ + +R++ NR L + ++ Sbjct: 400 ANIRFLKKLILNGADKHPGANFVMEE--KTKLRKYLKYGNRGKIAKDL-----KAKIMPN 452 Query: 445 KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQ 504 + + + VC +NADFDGD+M +H+P T EA+ EA LM S +N+++P +GEP+I Q Sbjct: 453 RTFRFNECVCTPFNADFDGDEMNIHLPQTEEARAEALVLMQSKSNMVTPRSGEPLIAAIQ 512 Query: 505 DVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELV 564 D + G Y +T+ V + + S L I + + G+ V Sbjct: 513 DFITGAYLLTQKDVFLDRAKVSQFCSSMLDSRTASTEIDLPV---PSIIKPVQLWTGKQV 569 Query: 565 AKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQI 624 L V A ++ + L K Sbjct: 570 ISALLSPLDVVFAFCVLLDVVFHNGEHICGVLDKST------------------------ 605 Query: 625 MYTGFAYAARSGASVGIDDMV----IPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYN 680 G + G S+GI D+ + K E++ + + + F+ G + + Sbjct: 606 --LGSGSRSNRGFSIGISDVTPEINVINGKRELVKNGYDKCDQHIQDFKDGRLHNQPGF- 662 Query: 681 KVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQL 740 A++ + ++ L ++ N+ MA G++GS I Q+ Sbjct: 663 -------TADETLEAVILRELSVIREDAGKICLKELHPSNAPLTMALCGSKGSNINISQM 715 Query: 741 AGMRGLMAKPDGSI--------------------IETPITANFREGLNVLQYFISTHGAR 780 G A I + + +F GL ++F T R Sbjct: 716 ISCVGQQAVSGRRIPNGFENRALPYFDRDSKVPAAKGFVENSFYSGLEPTEFFFHTMAGR 775 Query: 781 KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVL 840 +GL DTA+KTA +GYL RRL+ +DL + D + + G D +P Sbjct: 776 EGLVDTAVKTAETGYLQRRLIKSLEDLAIRYDTTVRNSVGGIVQFKYGHDGLDPSLMESK 835 Query: 841 GRVTAEDVLKPGTADILVPRNTLLHEQWCD--LLEENSVDAVKVRSVVSCDTDFGVCAHC 898 + + L + ++ + + ++ C Sbjct: 836 DQPIDYNHLLYHIKAVSYFLRNYINRIASKQPQNRKYGPHTPILDHHITEIQLKQFIQSC 895 Query: 899 YGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAA 945 + I G A+G IAAQSIGEPGTQ+T++TFH G A+ Sbjct: 896 G--NKYVRAKIEPGTAVGAIAAQSIGEPGTQMTLKTFHFAGVAAMNI 940 >UniRef50_P15398 DNA-directed RNA polymerase I subunit rpa1 n=2 Tax=Schizosaccharomyces RepID=RPA1_SCHPO Length = 1689 Score = 658 bits (1697), Expect = 0.0, Method: Composition-based stats. Identities = 235/1485 (15%), Positives = 472/1485 (31%), Gaps = 301/1485 (20%) Query: 131 PLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLK 190 + + + E I + ++ +E Y + + + Sbjct: 249 IPLSGKNLQFMEQTGKIRSDVLRDTSKKHHEDEGYDGDSDSSNESEVEGIDLFEEDPNPL 308 Query: 191 SMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNK-----PEWMILTVLPVL 245 + + + T ++L + ++ + + + + + L + V Sbjct: 309 KNKSKSPIAHGAKYMTSTEVRNHLRRLFVKENVVLSRLYAHKRGKPASADMFFLQNIAVP 368 Query: 246 PPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAA----------------PD 289 P RP + G + N+L R++ + ++ L + Sbjct: 369 PTRFRPASKM-GDEVHENIQNELLTRILQSSIQIASLSKDSTVEVNPDEKEGLERRSRAF 427 Query: 290 IIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDY 349 ++ N LQ V++L+D+ R + S P + +++ K+G FR++++GKRV+Y Sbjct: 428 ELLINAFVQLQHDVNSLIDSNRNPSSGGQSRTVP-PGIKQILEKKEGLFRKHMMGKRVNY 486 Query: 350 SGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI------KAAKKMVER 403 + RSVI+ P + ++ G+P A +L P + + ++ Sbjct: 487 AARSVISPDPNIETNEIGVPPVFATKLTYPEPVTLYNFNEMRNAVINGPHKWPGASHIQN 546 Query: 404 EEAVV---------------------------------------WDILDEVIREHPVLLN 424 E+ + + V ++LN Sbjct: 547 EDGTLISLMPLTIEQRTALANQLLTPQSNLISSPYSYSRLINTNKKVYRHVRNGDMLILN 606 Query: 425 RAPTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARAL 483 R PTLH+ + A + ++ G K I++H C +YNADFDGD+M +H P + A+ EA+ + Sbjct: 607 RQPTLHKPSMMAHKARILPGEKTIRMHYANCNSYNADFDGDEMNMHFPQSTNARSEAQFI 666 Query: 484 MMSTNNILSPANGEPIIVPSQDVV-LGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLA 542 + + L P +G+P+ QD V +G++ +D + E L +A + +G+ Sbjct: 667 ANTDSQYLVPTSGDPLRGLIQDHVVMGVWLTCKDTFYTRDEYQQLLF--QALKPDETGMY 724 Query: 543 SLHARVKVRITEYEKDANGELVAKTSLKDTTVG-RAILWM-------------------- 581 + I G+ + + L + R L + Sbjct: 725 GRIKTLPPAIQRPGIYWTGKQIISSVLLNLKPSDRPGLNLKSKAKVPGKYWSPDSEEGSV 784 Query: 582 -IVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVG 640 L I++++ + ++++ + + G + AYA G + Sbjct: 785 LFDDGELLCGILDKSSFGASAFGLVHSVHELYGPDIAGRLLSVLSRLFTAYAQMRGFTCR 844 Query: 641 IDDMVIPEK----KHEIISEAEAEVAEIQEQF-----------QSGLVTAGERYNKVIDI 685 +DD+ + E+ + +++ ++ E ++ + + R ++ + Sbjct: 845 MDDLRLDEQGDNWRRQLLENGKSFGLEAASEYVGLSTDSPIALLNANLEEVYRDDEKLQG 904 Query: 686 WAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRG 745 AA + M + + +N + M SGA+GS + Q++ + G Sbjct: 905 LDAA---MKGKMNGLTSSIINKCIPDGLLTKFPYNHMQTMTVSGAKGSNVNVSQISCLLG 961 Query: 746 LM--------------AKPDGSIIE------TPITANFREGLNVLQYFISTHGARKGLAD 785 + P E I + F G+ +Y+ R+GL D Sbjct: 962 QQELEGRRVPLMVSGKSLPSFVPYETSAKSGGFIASRFLTGIAPQEYYFHCMAGREGLID 1021 Query: 786 TALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVL--GRV 843 TA+KT+ SGYL R L+ + L V D + G D + + + L Sbjct: 1022 TAVKTSRSGYLQRCLMKHLEGLCVQYDHTVRDSDGSIVQFHYGEDSLDVTKQKHLTQFEF 1081 Query: 844 TAEDVLKPGTADILVPRNTLLHEQ----WCDLLEENSVDAVKVRSVVSCDTDFGVCAHCY 899 +A++ + + + + + + V G + + Sbjct: 1082 SAKNYKSLIQKYKVKSVLSAVDSETASSYAKKALKKPYKYDPVLDKYPPSRYLGSVSEKF 1141 Query: 900 GRD-------------------------------------LARGHIINKGEAIGVIAAQS 922 R + +++ GE++GV+A+QS Sbjct: 1142 QRAVDEYTQKNPDKLIASKKESKLDDSLLNESKFKALMQLRYQQSLVDPGESVGVLASQS 1201 Query: 923 IGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTEL 982 IGEP TQ+T+ TFH G ++ +++ +N+++ N + Sbjct: 1202 IGEPSTQMTLNTFHFAGFGAKNVTLGIPRLREIIMTASANIQTPTM------TLRLNDGV 1255 Query: 983 KLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDM-- 1040 KE K+ V+ + + G+ T + ++ + D Sbjct: 1256 SDKRASAFCKEVNKLVLSEVVRQVRVTEKISGQGSDEQSK-TYAIRLDLYSRDEYQDEYG 1314 Query: 1041 IDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYF 1100 + + I ++ S + + V G + A Sbjct: 1315 VLQEEIESTFSNRFLKILNRIIKSYLAKSKQRKSGGKDDTVPEVGQALKPLEDIDEAPIE 1374 Query: 1101 LPGKAIVQLEDGVQISSGDTLARI---PQESGGTKDIT-----GGLPRVADLF------- 1145 + ++ ED + E D G +V D+ Sbjct: 1375 GRAQEALEDEDNDATNEKMVSRSKQHASYEGPDEADKVALRQLKGSNKVEDVNMDEEEDE 1434 Query: 1146 -----EARRPKEPAILAEISGIVSFGKETK-----------GKRRLVITPVDGSDPYEEM 1189 E+ + L E VS + + + L V+G E+ Sbjct: 1435 GFKSDESVSDFKERKLLEKQNTVSISERRELQLKTAKEILSNCKHLDFDYVNGEWATVEL 1494 Query: 1190 IPKWRQLNVFEGERVERG----------------------------DVISDG-------- 1213 + + VE+ VI++G Sbjct: 1495 VFPINTEKLLMVSLVEKACSETVIHEIPGITRCFSKPPDSALDTVPKVITEGVNLKAIWE 1554 Query: 1214 -----------PEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR 1262 ILR+ GV A IV+EV V+ + G+ ++ +H+ +I M Sbjct: 1555 FYNEISMNDIYTNDIAAILRIYGVEAARNAIVHEVSSVFGVYGIAVDPRHLSLIADYMTF 1614 Query: 1263 KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISA 1322 G A +GI S + Sbjct: 1615 --------------------------------EGGYKAFNR---MGIEY----NTSPFAK 1635 Query: 1323 ASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQ 1367 SF+ T LTEAA+ G D+L ++VGR+ GTG Sbjct: 1636 MSFETTCHFLTEAALRGDVDDLSNPSSRLVVGRVGNFGTGSFDIF 1680 Score = 97.6 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 27/174 (15%), Positives = 52/174 (29%), Gaps = 23/174 (13%) Query: 10 AQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYE 69 AQ + E ++K + D + S ++ P ++ P GL+ + + Sbjct: 4 AQPVSSEIKSVKFGIYDVDDVEKISVKQIVNPVLLDN-LNHPTNGGLYDLALGPYL---- 58 Query: 70 CLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLD 129 + +C C ++ GHI L P H F S++ LL Sbjct: 59 -----------KNSVCATCHLDERYCP---GHFGHIVLPIPAYHPLFF----SQMYNLLR 100 Query: 130 MPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAE 183 + V + L +L E + ++ + G Sbjct: 101 STCLYCHHFKLSKVKVHLFFCRLKLLDYGLLNESEMVENVSLTEAIIKNSNGTP 154 >UniRef50_Q4U940 DNA-directed RNA polymerase n=2 Tax=Theileria RepID=Q4U940_THEAN Length = 1648 Score = 658 bits (1696), Expect = 0.0, Method: Composition-based stats. Identities = 234/1383 (16%), Positives = 442/1383 (31%), Gaps = 186/1383 (13%) Query: 5 LKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGP 64 +++ T D+++ + + I S E++ + + KP G +R+ Sbjct: 75 KEYVLPSTNKTIIDSLQFDVMASSDISRASEIEIEHKQLYLINSRKPCLYGPLDSRLG-- 132 Query: 65 VKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRI 124 C ++ ICE CG + GHI+LA P HI F K + Sbjct: 133 -----CFLMVITGCNNKDAICETCGKGYNEC---VGHWGHIKLALPVFHIGFFKYTIQIL 184 Query: 125 GLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEA 184 + + + + + + + L + + ++ + Sbjct: 185 YCICKKCSSLLLSEESIKKFYELHKKAQDDPVLKPLIFKNIVQDCKKISKCPRCQSPQGV 244 Query: 185 IQALLKSM-DLEQECEQLREE--------LNETNSETKRKKLTKRIKLLEAFVQSGNKPE 235 I+ ++K + D + + + + + E + K L + I + + V + PE Sbjct: 245 IKKIVKPIIDQFMKLKHIVKYKESGKMKTVEEELNPLVVKHLFENIDPVHSKVLNIVHPE 304 Query: 236 WMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNE 295 +I++ LP P +RP V + DL ++ ++ NN+LK + A Sbjct: 305 KLIISNLPAPPNCIRPSVSVGEEGTTEDDLTCIFSDIVESNNQLKSYIKNGAQTNSFIVH 364 Query: 296 KRMLQEAVDALLDNGRRGRAI---TGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGR 352 +++Q +++ A + +P + + +KGK+GRFR NL GKRVD+S R Sbjct: 365 WQIIQYQCTRFINSDSPALAQLLLSRRVSKPGRGIFQRLKGKEGRFRGNLSGKRVDFSAR 424 Query: 353 SVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAA--------------- 397 +VI+ P + + + +P+ +A L P K + L I Sbjct: 425 TVISPDPNVGIDEVVVPEWIARRLTFPERVTKYNIHVLKKAILNGVSVWPGASYVNKLDG 484 Query: 398 --------KKMVEREEAVVWD-ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQ 448 E V D + + V+ NR P+LHRL I ++ G + Sbjct: 485 SKCSLRFANPKHMSENLQVGDIVERHLWNGDIVIFNRQPSLHRLSIMCHRARVMSGSTFR 544 Query: 449 LHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVL 508 + VC YNADFDGD+M +H+P T EA+ EA L+ N+ +P NGEP+I P QD + Sbjct: 545 FNECVCLPYNADFDGDEMNLHLPQTYEARAEALHLLSVLKNLTTPRNGEPLIAPVQDFLC 604 Query: 509 GLYYMTRDCVNAKGEGMVL---------------TGPKEAERLYRSGLASLHARVKVR-- 551 Y +T + +G +K Sbjct: 605 ASYLLTSKDMFLNRSEFSQVISYFTDGTIQVDLPPPSIIHPVTLWTGKQVFSVLIKPNNK 664 Query: 552 ----------------ITEYEKDANG--------------------ELVAKTSLKDTTVG 575 +Y K+ N + V+ L D Sbjct: 665 SKVMVNIRVREREYTDPNQYYKNLNKDNLEGGKVENTKSQTSSNDVKPVSFMKLDDCMCP 724 Query: 576 RAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARS 635 +I L + + + K + ++ + + Sbjct: 725 SDGYVVIYKSELMCGSLGVRSLGASKGGLFYELMLKNSPKISSECMLRVSKLSSRWLSEF 784 Query: 636 GASVGIDDMVIPE----KKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAAND 691 G ++G+DD+ + KK +++ + + V E FQ + + + Sbjct: 785 GMTIGLDDVTPSKELIDKKKQLLLDGYSRVDEAISNFQ--FLQPYPGCTRE-----QTLE 837 Query: 692 RVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPD 751 K+++D L+ E+ N +M +SGA+G+ I Q+ G Sbjct: 838 LQVKSILDELRNES---GKICTSLLNPDNKPLIMFNSGAKGALINIAQMVACVGQQNVSG 894 Query: 752 GSI--------------------IETPITANFREGLNVLQYFISTHGARKGLADTALKTA 791 I + +F GL ++F T R+GL DTA+KT+ Sbjct: 895 QRIQNGFIGRTLPHFTMGCKDAKSRGFVANSFFTGLEPEEFFFHTMSGREGLIDTAVKTS 954 Query: 792 NSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAE----D 847 +GY+ RRL+ V +DL V D + + G D L + + Sbjct: 955 ETGYMQRRLMKVMEDLSVCYDYSVRTSDGQIVQFLYGDDGLSSLSKSCFTNLKSSLDHIK 1014 Query: 848 VLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGH 907 + P ++ + + + + S K++ + C L + Sbjct: 1015 HINPINKQLIFTSSHIDPTHLDNQEQGPSKRRNKLKRSGTNTNKERKCTQDSKWILPPKN 1074 Query: 908 IINKGEAIGVI--AAQSIGEPGTQLTMRT-----FHIGGAASRAAAESSIQVKN---KGS 957 + E + + + + + Q+ + + A + K S Sbjct: 1075 VEELLEKVDSLLMDKEFVSKLPPQIKNKVASYIHWIKPTETDCEACPEKDRRKFLERLDS 1134 Query: 958 IKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVL-AKGDGEQVAGGET 1016 + S KSV ++ + E ++ + + + + Sbjct: 1135 RQFSRAKSVDDNIINTFKNHIVAYFSVYVENSYSRRNVPLFPCEIEAWTKFLQP-----L 1189 Query: 1017 VANWDPHTMPVITEVSGFVRFT-------DMIDGQTITRQTDELTGLSSLVVLDSAERTA 1069 + P T+ + VS + G TI R E + +LV+ E+ Sbjct: 1190 LVELLPPTIYNHSCVSQVSDYPYSYGIGSVYEFGNTIERVLMEHSEKIALVLDKKYEQVF 1249 Query: 1070 GGKDLRPALKIVD-------------AQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQIS 1116 + I + D PG+AI L Sbjct: 1250 ESINTESQTVIERFKLVNTVNRISLEQMFEFIRYSWKDYQKSLCEPGEAIGALGSQSIGE 1309 Query: 1117 SGDTLARIPQESGGTK--DITGGLPRVADLFEARRPKEPAILAE-----------ISGIV 1163 + G ++T G+PR+ ++ A I+ + Sbjct: 1310 PATQMTLKTFHFAGVASMNVTLGVPRIQEIINATSLIATPIIEVPLEDKTSYEFALKVKS 1369 Query: 1164 SFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRL 1223 K T G+ L I + + + R L + + H I Sbjct: 1370 KIEKTTLGQICLNIKQLYTPQNSKLLFTLNRNLIEQLHLEINSNKFLIIPDFYTHHIYTY 1429 Query: 1224 RGV 1226 + Sbjct: 1430 LDI 1432 Score = 175 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 93/525 (17%), Positives = 179/525 (34%), Gaps = 108/525 (20%) Query: 840 LGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCY 899 + RV E A +L + + E + V +V + Y Sbjct: 1226 IERVLME--HSEKIALVLDKKYEQVFESINTESQTVIERFKLVNTVNRISLEQMFEFIRY 1283 Query: 900 GRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIK 959 + + GEAIG + +QSIGEP TQ+T++TFH G AS + Sbjct: 1284 SWKDYQKSLCEPGEAIGALGSQSIGEPATQMTLKTFHFAGVASMNVTLGVPR-------- 1335 Query: 960 LSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVAN 1019 ++ ++N++ + +I+ K SY+ L T+ Sbjct: 1336 ---IQEIINATSLIATP-------IIEVPLEDKTSYEF----ALKVKSK---IEKTTLGQ 1378 Query: 1020 WDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALK 1079 + + T + + FT ++ I + E+ L++ D + L Sbjct: 1379 ICLNIKQLYTPQNSKLLFT--LNRNLIEQLHLEINSNKFLIIPDFYTH-----HIYTYLD 1431 Query: 1080 IVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLP 1139 I+ G+ + +P ++ + D I LP Sbjct: 1432 IIIETGSFGKVK---------IPKNSVYSIGDWQ--------------------ICIELP 1462 Query: 1140 RVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVF 1199 F ++ A+++ ++ +V G ++ + + Y+ + + V Sbjct: 1463 SNQQHF----FQQNALISGLTQLVVAGYKSIKRAVIKRESTPQGPNYQIAVEGYGLQEVM 1518 Query: 1200 EGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQ 1259 V V ++ ++ G+ A I++E+Q + I+ ++++++ Sbjct: 1519 GSYGVMSSAV---KSNHVSEVAKVLGIEAARSVIISEIQKCMDAYSIDIDCRYMKLLGDV 1575 Query: 1260 MLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESF 1319 M GE V +R GI K S Sbjct: 1576 MT-------------FRGEVVGINRF----------------------GIQK---MRSSA 1597 Query: 1320 ISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 + ASF+ET L EAA+ +RD ++G+ E +I+G+ I GTG Sbjct: 1598 LMLASFEETNDHLLEAALHHRRDPIKGVSECIIMGKPISLGTGSF 1642 >UniRef50_Q9HM79 DNA-directed RNA polymerase subunit A' n=16 Tax=Euryarchaeota RepID=RPOA1_HALSA Length = 971 Score = 650 bits (1677), Expect = 0.0, Method: Composition-based stats. Identities = 222/947 (23%), Positives = 346/947 (36%), Gaps = 161/947 (17%) Query: 14 TEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCG 73 +E I L P+ R S +V +T + P GL R+ Sbjct: 7 PKEIGEISFGLMDPEEYRDMSATKVITADTYD-DDGFPIDMGLMDPRLG----------- 54 Query: 74 KYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLK-------SLPSRIGL 126 + G+ C+ CG GHIELA+P H+ F K Sbjct: 55 ----VIDPGLECKTCGQRSGGCN---GHFGHIELAAPVIHVGFSKLIRRLLRGTCRECAS 107 Query: 127 LL------------------------------------DMPLRDIERVLYFESYVVIEGG 150 LL V Y + E Sbjct: 108 LLLTEEEKDEYRENLDRTRSLRQDVSDVMTAAIREARKKDHCPHCGEVQYDVKH---EKP 164 Query: 151 MTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQ---------ECEQL 201 T E QQ+L + + D + Q L + D++ E Sbjct: 165 TTYYEVQQVLASDYSERIAASMQPDEDEDDAGVSPQELAEQTDIDISRINEILSGEFRPR 224 Query: 202 REE-------------------LNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVL 242 RE+ L ++ + + ++PEWMILTVL Sbjct: 225 REDREAIETAIGADLTTEDMNKLMPSDIRDWFEDIPGEDLEALGVNSDRSRPEWMILTVL 284 Query: 243 PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEA 302 PV P RP + LD G+ + DL +I N R + AP +I+ + +LQ Sbjct: 285 PVPPVTARPSITLDNGQRSEDDLTHKLVDIIRINQRFMENREAGAPQLIIEDLWELLQYH 344 Query: 303 VDALLDNGRRGRAI-TGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYL 361 V +DN G + RPLK+L+ +KGK+GRFR +L GKRV++S R+VI+ P L Sbjct: 345 VTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPDPTL 404 Query: 362 RLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAA------KKMVEREEAVV------- 408 L++ G+P ++A E+ + + + L ++ V R + Sbjct: 405 SLNEVGVPDRVATEMTQTMVVNEQNLERARRYVRNGPEGHPGANYVTRPDGRRVRVTEKV 464 Query: 409 -----------WDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAY 457 W++ +I ++ NR P+LHR+ I A E V++ K +L+ +VC Y Sbjct: 465 CEELAERVEPGWEVQRHLIDGDIIIFNRQPSLHRMSIMAHEVVVMPYKTFRLNTVVCPPY 524 Query: 458 NADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDC 517 NADFDGD+M +H EA+ EAR LM ILSP GE II QD + G Y +T D Sbjct: 525 NADFDGDEMNMHALQNEEARAEARVLMRVQEQILSPRFGENIIGAIQDHISGTYLLTNDN 584 Query: 518 VNAKG----EGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTT 573 + + T E + EL+ + T Sbjct: 585 PRFNETQASDLLRQTRIDELPAAAGTDEDG-------DQYWTGHQIFSELLPDDLSLEFT 637 Query: 574 VGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAA 633 +I L + + S++++T ++ G IF +++ Sbjct: 638 GTTGDTVVIEDGQLLEGTIADDEVGEYGSEIVDTITKVHGNTRARIFINEVASLAMRSIM 697 Query: 634 RSGASVGIDDMVIP----EKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAA 689 G S+GIDD + E+ E I A V E+ E +++G + + Sbjct: 698 HFGFSIGIDDETVSTEARERIDEAIQSAYDRVQELIETYENGDLESLPG--------RTV 749 Query: 690 NDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAK 749 ++ + +M L D EE N +MA+SGARGS + Q+AG G A Sbjct: 750 DETLEMKIMQTLGKARDSAGDVAEENFDEDNPAVVMANSGARGSMLNLTQMAGCVGQQAV 809 Query: 750 PDGSIIE--------------------TPITANFREGLNVLQYFISTHGARKGLADTALK 789 I + ++ GL ++F G R+GL DTA++ Sbjct: 810 RGERINRGYEDRTLSHFAPNDLSSEAHGFVENSYTSGLTPKEFFFHAMGGREGLVDTAVR 869 Query: 790 TANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLR 836 T+ SGYL RRL++ +L D + G D P++ Sbjct: 870 TSKSGYLQRRLINALSELETQYDGTVRDTSDTIVQFEFGEDGTSPVQ 916 >UniRef50_A7AP17 DNA-directed RNA polymerase n=1 Tax=Babesia bovis RepID=A7AP17_BABBO Length = 1541 Score = 649 bits (1674), Expect = 0.0, Method: Composition-based stats. Identities = 173/912 (18%), Positives = 323/912 (35%), Gaps = 110/912 (12%) Query: 2 KDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARI 61 + + +K+ + ++ + ++I S ++ K E + +P G+ ++ Sbjct: 77 SNKKELVKSSVTRCTIEGVQFDVMGSEVISRISELQIMKRELYDNSNNEPLPLGVLDLKL 136 Query: 62 FGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLP 121 G +C CG ++ Q GHI+L P HI F K Sbjct: 137 G---------------SNRGGSLCHTCGKDLKQC---VGHWGHIQLQMPVFHIGFFKYTI 178 Query: 122 SRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMG 181 + + + + ++ + + L +Q + + + Sbjct: 179 QILYCICKRCAFLLLPENTVKRFLEAHRRRMDDPLLRPLLFKQIMQECRKITKCPRCEAR 238 Query: 182 AEAIQALLKS-MDLEQECEQLREE--------LNETNSETKRKKLTKRIKLLEAFVQSGN 232 I+ ++K MD + + + + E + K+L + I A + + Sbjct: 239 QGVIRRIVKPVMDQFMKLRHVIKYKEGGKLHSIEEDLNPLVVKQLFESIDPTHAKILNVV 298 Query: 233 KPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIV 292 PE +++ L V P +RP V ++G DL ++ ++ NN K + + Sbjct: 299 SPEKLLINNLAVPPSCIRPSVTIEGQGTTEDDLTCIFSDIVELNNGWKNQIRNGSQISQF 358 Query: 293 RNEKRMLQEAVDALLDNGRRGRAI---TGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDY 349 + LQ L++ + + + +P + + +KGK+GRFR NL GKRVD+ Sbjct: 359 ILSWQCLQLQCTRLINAEAPAVSQLLVSRNISKPGRGVCQRLKGKEGRFRGNLSGKRVDF 418 Query: 350 SGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAA------------ 397 S R+VI+ P + + + +P+ +A++L P + + + Sbjct: 419 SARTVISPDPNVGVDEVVVPEWIAMKLTFPEEVTDSNISIMKKAVLNGVSIWPGATYVKK 478 Query: 398 -----------KKMVEREEAVVWDI-LDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGK 445 + V D+ L + VL NR P+LHR+ I A ++ G Sbjct: 479 QNGGKCSLQYANPKYMSDNLTVGDVVLRHLWNGDVVLFNRQPSLHRMSIMAHRVRVMPGS 538 Query: 446 AIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQD 505 + + VC YNADFDGD+M +H+P T EA+ EA LM +N+ +P NGEP+I QD Sbjct: 539 TFRFNECVCQPYNADFDGDEMNLHLPQTYEAKAEALHLMSVLHNLTTPRNGEPLIAAVQD 598 Query: 506 VVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVA 565 + Y +T A + + K L+ Sbjct: 599 FLCASYLLTSKDRFLTRAEFCQAC-CHFTDAASQVDLPPPAIIYPVMLWTGKQVFNALLR 657 Query: 566 KTSL--------------------KDTTVGRAILWMI-VPKGLPYSIVNQALGKKAISKM 604 K+ + ++I L + + + + Sbjct: 658 PNRRCKVVVNFECKEREFQDPPVGKNACMCPKDGYVIFHNSELVSGALGKKALGASKDGL 717 Query: 605 LNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEK----KHEIISEAEAE 660 ++ + A G ++G+DD+ + K E+++E A+ Sbjct: 718 FYQLLTRNNRYIAAECMLRVSKLTSRWLAGFGMTIGLDDVRPGPELLHHKQELLNEGYAK 777 Query: 661 VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFN 720 V F + A + + K ++D L+ E + N Sbjct: 778 VTAAINNFD--TLQALPGCTRE-----ETLELQVKRVLDELRNE---AGKACNSNLRADN 827 Query: 721 SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSI--------------------IETPIT 760 +M +SGA+G+ I Q+ + G I + Sbjct: 828 KPLIMFNSGAKGALINIAQMVALVGQQNVSGQRIENGFIGRTLPHFDIGCMDAKSRGFVA 887 Query: 761 ANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGI 820 +F GL ++F T R+GL DTA+KT+ +GY+ RRL+ + L V D Sbjct: 888 NSFFSGLGPEEFFFHTMSGREGLIDTAVKTSETGYMQRRLMKALEVLAVCYDHTVRTTDG 947 Query: 821 MMTPVIEGGDVK 832 + + G D Sbjct: 948 HVVQFLYGDDGL 959 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 50/371 (13%), Positives = 110/371 (29%), Gaps = 62/371 (16%) Query: 1015 ETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDL 1074 +++ +G + I + + + + ++ KD Sbjct: 1207 QSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASSTIQTPIIE---VPLINNKDF 1263 Query: 1075 RPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQE------- 1127 AL + L + F P A +++ + L + Sbjct: 1264 EYALMVKARIEKTTLGQVCSDIKEIFGPTGAQLRVTLNENLIKKLLLQIDAFKVREIILD 1323 Query: 1128 -----SGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKE----TKGKRRLVIT 1178 + L + + + IV+ + K +R VI Sbjct: 1324 NSVMTKFKLGKHAISVVNKYQLNIDLATSQHQFFQQHALIVTLLQIMVAGGKSIKRAVIK 1383 Query: 1179 PVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQ 1238 +D + + + E ++ ++ G+ A I++E+Q Sbjct: 1384 KETDADGFRYQL-AVEGYGLQEVIGAAGVKSTGVKSNHVLEVAKVLGIEAARSVIISEIQ 1442 Query: 1239 DVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKV 1298 + I+ ++++++ M Sbjct: 1443 KCMDAYSIDIDQRYMKLLGDVMT------------------------------------- 1465 Query: 1299 GATYSRDLLGITKASLAT--ESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRL 1356 + +++GI + + S + ASF+ET L EAAV RD ++G+ E +I+G+ Sbjct: 1466 ---FRGEVIGINRFGIQKMRASTLMLASFEETNEHLFEAAVHRLRDPIKGVSECIIMGKQ 1522 Query: 1357 IPAGTGYAYHQ 1367 +P GTG Sbjct: 1523 VPLGTGAFDVL 1533 Score = 86.1 bits (211), Expect = 9e-15, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 79/231 (34%), Gaps = 12/231 (5%) Query: 874 ENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMR 933 E ++ VK + +S F C + I GEAIG + AQSIGEPGTQ+T++ Sbjct: 1162 EFRLNMVKCQHRLSVRQIFEFVRCC--WKDYQRAICVPGEAIGALGAQSIGEPGTQMTLK 1219 Query: 934 TFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVV--------NSSGKLVITSRNTELKLI 985 TFH G AS ++K + + ++ + L++ +R + L Sbjct: 1220 TFHFAGVASMNVTLGVPRIKEIINASSTIQTPIIEVPLINNKDFEYALMVKARIEKTTLG 1279 Query: 986 DEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQT 1045 KE + P GA L E + + D + I + + + Sbjct: 1280 QVCSDIKEIFG-PTGAQLRVTLNENLIKK-LLLQIDAFKVREIILDNSVMTKFKLGKHAI 1337 Query: 1046 ITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMP 1096 +L + ++ A L + +I Sbjct: 1338 SVVNKYQLNIDLATSQHQFFQQHALIVTLLQIMVAGGKSIKRAVIKKETDA 1388 >UniRef50_Q3M5C9 DNA-directed RNA polymerase subunit gamma n=11 Tax=cellular organisms RepID=RPOC1_ANAVT Length = 625 Score = 649 bits (1674), Expect = 0.0, Method: Composition-based stats. Identities = 342/559 (61%), Positives = 434/559 (77%), Gaps = 18/559 (3%) Query: 11 QTKTEEFDAIKIALASPDMIRSWS---------FGEVKKPETINYRTFKPERDGLFCARI 61 +T +FD +KI LASP+ IR W GEV KPETINYRT KPE DGLFC RI Sbjct: 3 PAQTNQFDYVKIGLASPERIRQWGERTLPNGQVVGEVTKPETINYRTLKPEMDGLFCERI 62 Query: 62 FGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLP 121 FGP KD+EC CGKYKR++HRG++CE+CGVEVT+++VRR RMG+I+LA+P AH+W+LK +P Sbjct: 63 FGPAKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGYIKLAAPVAHVWYLKGIP 122 Query: 122 SRIGLLLDMPLRDIERVLYFESYVVIEGGM-TNLERQQILTEEQYLDALEEFGDE----- 175 S I +LLDMPLRD+E+++YF SYVV+ G L +Q+L+E+Q+L+ ++ E Sbjct: 123 SYISILLDMPLRDVEQIVYFNSYVVLSPGNAETLTYKQLLSEDQWLEIEDQIYSEDSQLQ 182 Query: 176 -FDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKP 234 + +GAEA+ LL ++LEQE E LREE+ KR KL KR+++++ F+ +G+KP Sbjct: 183 GVEVGIGAEALLRLLADINLEQEAESLREEIGSAKG-QKRAKLIKRLRVIDNFIATGSKP 241 Query: 235 EWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRN 294 EWM++TV+PV+PPDLRP+V LDGGRFATSDLNDLYRRVINRNNRL RL ++ AP+IIVRN Sbjct: 242 EWMVMTVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVRN 301 Query: 295 EKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSV 354 EKRMLQEAVDAL+DNGRRGR + G+N RPLKSL+D+I+GKQGRFRQNLLGKRVDYSGRSV Sbjct: 302 EKRMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRSV 361 Query: 355 ITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDE 414 I VGP L++HQCGLP++MA+ELF+PF+ +L G+ IKAAKK++ R + VWD+L+E Sbjct: 362 IVVGPKLKIHQCGLPREMAIELFQPFVINRLIRSGMVNNIKAAKKLISRNDPSVWDVLEE 421 Query: 415 VIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTL 474 VI HPV+LNRAPTLHRLGIQAFEP+L+EG+AIQLHPLVC A+NADFDGDQMAVHVPL+L Sbjct: 422 VIEGHPVMLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLSL 481 Query: 475 EAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVN-AKGEGMVLTGPKEA 533 E+Q EAR LM+++NNILSPA G PII PSQD+VLG YY+T + KG G + Sbjct: 482 ESQAEARLLMLASNNILSPATGRPIITPSQDMVLGAYYLTAENPGATKGAGKYFASLDDV 541 Query: 534 ERLYRSGLASLHARVKVRI 552 ++ LHA + VR Sbjct: 542 IMAFQQEQIDLHAYIYVRF 560 >UniRef50_D0EVW4 DNA-directed RNA polymerase n=1 Tax=Bryopsis hypnoides RepID=D0EVW4_9CHLO Length = 920 Score = 647 bits (1669), Expect = 0.0, Method: Composition-based stats. Identities = 325/828 (39%), Positives = 491/828 (59%), Gaps = 88/828 (10%) Query: 195 EQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVP 254 E++ L E N + ++ +L +R+K++ F Q+ NKP WMIL++LPVLPPDLRP++ Sbjct: 100 ERQIRILLIENNVNSHFFEKIRLLQRLKIIRCFRQTKNKPAWMILSILPVLPPDLRPILQ 159 Query: 255 LDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDII--VRNEKRMLQEAVDALLDNGRR 312 L+ + A SDLN LY++V+ RN RL+RLL+ + ++ +R+LQE+VDAL++NG+ Sbjct: 160 LNNDQIAISDLNKLYQKVLFRNRRLQRLLNDLYIQNVDEMQYAQRLLQESVDALIENGKS 219 Query: 313 GR-AITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKK 371 G SN RPLKSL+DM+KGK+GRFRQNLLGKRVDYSGRSVI VG L+L++CGLPK+ Sbjct: 220 GNQPAQTSNNRPLKSLSDMLKGKKGRFRQNLLGKRVDYSGRSVIIVGSNLQLYECGLPKE 279 Query: 372 MALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHR 431 MA+ELF+PF+ +L +R A TI AKK++++ A++W IL EV++ HP+LLNRAPTLHR Sbjct: 280 MAIELFQPFLLRRLIIRKKAKTILGAKKLIQQSNAIIWPILKEVLQSHPILLNRAPTLHR 339 Query: 432 LGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNIL 491 L IQAF+P LIEG+AI LHPLVC+++NADFDGDQMAVH+PL+ E++ EA L+ S NN + Sbjct: 340 LSIQAFQPKLIEGRAILLHPLVCSSFNADFDGDQMAVHIPLSFESRAEAWKLLWSLNNFI 399 Query: 492 SPANGEPIIVPSQDVVLGLYYMTRDCVNAKGE-----------------GMVLTGPKEAE 534 SPA G+PI++PSQD+VLG Y+T E + E + Sbjct: 400 SPATGQPILLPSQDMVLGSSYLTLKNSKTFQEIYYQLNTQKSFDRNLILKIQQLSFYEIK 459 Query: 535 RLYRSGLA----SLHARVKVRI----------------------------TEYEKDANGE 562 +++ H + +K + + Sbjct: 460 QIFNKTQVETIQHYHQSFWIIWNQHFETDCKTQKLLEMKLNRFGVFQKIYPNLQKSFSSK 519 Query: 563 LVAKTSLKDTTVGRAILWMI----------------------VPKGLPYSIVNQALGKKA 600 + TT+GR + + K ++ KK Sbjct: 520 NKQQNQKILTTIGRILFYFWLNPASFKKLNAAEYYFMLLEKQSRKAHMDYFFDRCFEKKR 579 Query: 601 ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAE 660 + ++L Y I G K T+ + + GF Y+ +SG S+G++D+ + KK ++ + +E E Sbjct: 580 LKQLLIWFYHIEGEKNTLKLLENLKQLGFFYSTKSGLSIGLEDLQLNLKKSQLYNLSEFE 639 Query: 661 VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFN 720 + +I+ +Q +T E ++++++IWA N+++ +++N Q + N Sbjct: 640 IQQIELHYQKSNLTKLEYFHQLVEIWAKTNEKLKYQIINNFQLKNQ------------LN 687 Query: 721 SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR 780 +++MA SGARG+ +Q+RQL GMRGLM+ P G I++ PI +NFREGL + +Y IS +GAR Sbjct: 688 PLFLMAFSGARGNISQVRQLVGMRGLMSDPTGQILDFPIRSNFREGLTLTEYIISCYGAR 747 Query: 781 KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVL 840 KG+ DTAL+TA SGYLTRRLVDVAQ +++ + DC I + ++ G + L+ R+L Sbjct: 748 KGIVDTALRTATSGYLTRRLVDVAQHVIIEKQDCKNFYPIWVGNLLSGKKILLSLKQRLL 807 Query: 841 GRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYG 900 GR+ + + + + + +N+ + L + + + +RS ++C + +C +CYG Sbjct: 808 GRILGKQIEIQQSKN-IFFKNSEITVLMAAHL-ASEFNKIPIRSPLTCISPKSICQYCYG 865 Query: 901 RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAES 948 +LA I++ GEA+GV+AAQSIGEPGTQLTMRTFH GG S E Sbjct: 866 WNLAMESIVSLGEAVGVLAAQSIGEPGTQLTMRTFHTGGVFSGDLIEQ 913 >UniRef50_A9UY22 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monosiga brevicollis RepID=A9UY22_MONBE Length = 1592 Score = 646 bits (1666), Expect = 0.0, Method: Composition-based stats. Identities = 223/1361 (16%), Positives = 436/1361 (32%), Gaps = 297/1361 (21%) Query: 234 PEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDI--- 290 E L VLPV P RP + G F + +I ++L+ + + + Sbjct: 302 YESFFLRVLPVPPNRFRPPSLMGGQTF-ENSQTITLGAIIKDVDQLRDIFKMRMSEEDGN 360 Query: 291 ----------IVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQ 340 + + LQ V+ L+D+ G + + +++ K+G FR Sbjct: 361 VAEYERKRVENLNRAWQQLQSHVNILIDSSLAGGRAALDVQ---PGIRQLLERKEGLFRM 417 Query: 341 NLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI------ 394 +++GKRV+Y+ R+VI+ P + ++ G+P A L P + L + Sbjct: 418 HMMGKRVNYAARTVISPDPMIGTNEVGVPDCFATRLTYPQPVTPWNVNYLRQCVLNGPDV 477 Query: 395 KAAKKMVEREEAVV-----------------------------WDILDEVIREHPVLLNR 425 V E+ V ++ + VL+NR Sbjct: 478 HPGATHVMDEDGHVTVLSRELSKRVPIADQLLTPSPKARSDRPKIVMRHIKNGDWVLMNR 537 Query: 426 APTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 484 P+LH+ I A + ++ G + ++LH C +YNADFDGD+M +H P + A+ EA + Sbjct: 538 QPSLHKSSIMAHQVRVLTGERTMRLHYSNCKSYNADFDGDEMNLHFPQSEFARAEASEIA 597 Query: 485 MSTNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVLTGPKEAERLYRSGLAS 543 + + A G+P+ QD V+ M +D + L + Sbjct: 598 SNNFQYIGLA-GDPLRGLIQDHVIAAVKMCCKDSFYDRHHYQTFVYSA----LKDEYKGT 652 Query: 544 LHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWM---------------------- 581 V + + ++ G+ + T LK+ T+ + + + Sbjct: 653 RIVTVPPAMIKPQRLWTGKQIITTILKNLTLNQTGMNLYGKAKIKNAWSANDKGGLEGES 712 Query: 582 ---IVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGAS 638 + L I+++A + +++ Y + G + F + + G + Sbjct: 713 TVIVRNCELLCGILDKAQVGNSTYGIVHAVYEVYGGRTAGEFLSALGRVWTMWLKMHGHT 772 Query: 639 VGIDDMVIPEK----KHEIISEAEAEVAEIQEQF--------------QSGLVTAGERYN 680 + IDD+++ + + EI+ ++ E + + + Sbjct: 773 LCIDDLILRPEFDAARREILDDSTTHGHEAAANYVKQDDWRDDDLLKSNLQTILRDPGES 832 Query: 681 KVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQL 740 K +D +S A K N+ ++ SGA+GS Q+ Sbjct: 833 KGLDS------AMSGAANKIQSKVIEKTMPHGLIKPFPHNNFQLIVQSGAKGSNVNATQI 886 Query: 741 AGMRGLM--------------AKPDGSIIE------TPITANFREGLNVLQYFISTHGAR 780 + M G P + IT F GL +YF R Sbjct: 887 SCMLGQQMLEGRRVPVMSSGKTLPSFPAFDASLRAGGLITDRFLTGLRPQEYFFHCMAGR 946 Query: 781 KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVL 840 +GL DTA+KT+ SGYL R L+ +D+ V D + G D + + L Sbjct: 947 EGLVDTAVKTSRSGYLQRCLIKHLEDIKVHYDLTVRDSDGSVVQFRYGEDALDVTKTNSL 1006 Query: 841 GRVTAEDVLKPGTADILVPRN-TLLHEQWCDLLEENSV----------DAVKVRSVVSCD 889 T D + +L N L + + + + V + + D Sbjct: 1007 ---TNFDFMALNYPALLSRYNVEALGDAFPGKVRQAGKMQQEAIAQPAKHDPVLATLRPD 1063 Query: 890 TDFGVCAHCYGRDLA------------------------------RGHIINKGEAIGVIA 919 T FG + + + L + GE +G++A Sbjct: 1064 THFGCVSENFYKKLQGYLTKDPARLADLSKGLDAKRFEQLMYLISCRAVAEPGEPVGILA 1123 Query: 920 AQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRN 979 AQSIGEP TQ+T+ TFH G +++ K+ Sbjct: 1124 AQSIGEPSTQMTLNTFHFAGRGDVNVTLGIPRLREIVMTASKAAKT-------------- 1169 Query: 980 TELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTD 1039 + ++ ++ A V + + + H+ + R Sbjct: 1170 -PIMIVPLRLSVP---QIQERARSLAARLAPVRLSDVLDRVEVHSKLAASRDGDRFRSYR 1225 Query: 1040 MIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLI--------- 1090 + + +E+ G+ + + E + + + + +D +I Sbjct: 1226 IRLSLIDKEEYEEVFGIGRKELFKALENKVVARLFKMGHRSIVTSSSDKIIAQGDGDDAE 1285 Query: 1091 ----------PGTDMPAQYFLPGKA------------IVQLEDGVQISSGDTLARIPQES 1128 G D+ A + D + + D + Sbjct: 1286 AHDQEGGDDADGADVEANREIGEGDGTLAAPRQDEDQNAGDSDDDEAFANDVDMEADEGH 1345 Query: 1129 GGTKDIT----GGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGK------------ 1172 G D+ + +A + ARR ++A I + ++KG+ Sbjct: 1346 GSDNDLEHATDQQVAELAKIAAARRKHRERVIALSPAIADYDYDSKGRWLEVELAVPASM 1405 Query: 1173 -------------RRLVITPVDGSDPYEEMIPKWRQLNVFE---GERVERGDVISDGP-- 1214 +++++ G +P+ L V E + +++ Sbjct: 1406 QKMLFVTILENSAKKIMLRETKGIKSCRVHVPEPDTLQVEGLNIYELWQHAELLELNSLK 1465 Query: 1215 -EAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD 1273 + + GV A R I+ E+ V+ + G+ +N +H+ ++ M Sbjct: 1466 CNDVNAMFETYGVEAGQRSIIRELSAVFDVYGIAVNHRHLSLVADYM------------- 1512 Query: 1274 FLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASL-ATESFISAASFQETTRVL 1332 + D G+ + S+ ++ SF+ TT L Sbjct: 1513 ---------------------------AFEGDYRGMNRISMRSSTDPFLKMSFESTTDFL 1545 Query: 1333 TEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRR 1373 + + G D L+ +++G + GTG + + Sbjct: 1546 RASTLRGDHDTLQSNSSRLVLGAVTAGGTGVCSVVQPLVKE 1586 Score = 87.2 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 31/122 (25%), Gaps = 23/122 (18%) Query: 16 EFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKY 75 + + + R S + + + P GL+ + Sbjct: 1 QVRGVSFGMFDDATTRRLSVKGISHADGFD-ELNNPMIGGLYDPALGP------------ 47 Query: 76 KRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDI 135 C C + T MGHIEL H F + + LL R Sbjct: 48 ---VDNSERCTTCHLLGTHCP---GHMGHIELPVHVYHPLFFQQ----LYQLLRAKCRLC 97 Query: 136 ER 137 + Sbjct: 98 HK 99 >UniRef50_Q9SVY0 DNA-directed RNA polymerase n=2 Tax=rosids RepID=Q9SVY0_ARATH Length = 1670 Score = 646 bits (1666), Expect = 0.0, Method: Composition-based stats. Identities = 232/1492 (15%), Positives = 461/1492 (30%), Gaps = 263/1492 (17%) Query: 116 FLKSLPSRIGLLLDMPLRDIERVLY----FESYVVIEGGMTNLERQQILTEEQYLDALEE 171 F++ +E+ ++ + + G + ++ ++ + Sbjct: 205 FMRLSSKSCSR-CKGINPKLEKPMFGWVRMRAMKDSDVGANVIRGLKLKKSTSSVENPDG 263 Query: 172 FGDE-----FDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEA 226 F D + + G + + + E E + +L + K L + + Sbjct: 264 FDDSGIDALSEVEDGDKETREKSTEVAAEFEEHNSKRDLLPSEVRNILKHLWQNEHEFCS 323 Query: 227 FV-------QSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRL 279 F+ L + V P RP G +VI NN L Sbjct: 324 FIGDLWQSGSEKIDYSMFFLESVLVPPTKFRPP-TTGGDSVMEHPQTVGLNKVIESNNIL 382 Query: 280 KRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFR 339 V R LQE+V+ L D+ + T ++R + +++ K+G FR Sbjct: 383 GNACTNKLDQSKVIFRWRNLQESVNVLFDS----KTATVQSQRDSSGICQLLEKKEGLFR 438 Query: 340 QNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKK 399 Q ++GKRV+++ RSVI+ PY+ ++ G+P AL+L P + L I Sbjct: 439 QKMMGKRVNHACRSVISPDPYIAVNDIGIPPCFALKLTYPERVTPWNVEKLREAIINGPD 498 Query: 400 MVERE------------------------------------------EAVVWDILDEVIR 417 + + + Sbjct: 499 IHPGATHYSDKSSTMKLPSTEKARRAIARKLLSSRGATTELGKTCDINFEGKTVHRHMRD 558 Query: 418 EHPVLLNRAPTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEA 476 VL+NR PTLH+ + A + +++G K ++LH C+ YNADFDGD+M VH P + Sbjct: 559 GDIVLVNRQPTLHKPSLMAHKVRVLKGEKTLRLHYANCSTYNADFDGDEMNVHFPQDEIS 618 Query: 477 QLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPK----E 532 + EA ++ + N P+NGEP+ QD ++ +T+ + + Sbjct: 619 RAEAYNIVNANNQYARPSNGEPLRALIQDHIVSSVLLTKRDTFLDKDHFNQLLFSSGVTD 678 Query: 533 AERLYRSGLASLHARVK----------VRITEYEKDANGELVAKTSLKDTTVGRAIL--- 579 SG + V I + G+ V L T G Sbjct: 679 MVLSTFSGRSGKKVMVSASDAELLTVTPAILKPVPLWTGKQVITAVLNQITKGHPPFTVE 738 Query: 580 --------------------------------------WMIVPKGLPYSIVNQALGKKAI 601 V + K Sbjct: 739 KATKLPVDFFKCRSREVKPNSGDLTKKKEIDESWKQNLNEDKLHIRKNEFVCGVIDKAQF 798 Query: 602 --SKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEA 659 +++T + + G + G + G+DD++I + E ++ Sbjct: 799 ADYGLVHTVHELYGSNAAGNLLSVFSRLFTVFLQTHGFTCGVDDLIILKDMDEERTKQLQ 858 Query: 660 EVAEIQEQFQSG--------LVTAGERYNKVIDIWAA----ANDRVSKAMMDNLQT---- 703 E + E+ + + +++ I A + +++++ L Sbjct: 859 ECENVGERVLRKTFGIDVDVQIDPQDMRSRIERILYEDGESALASLDRSIVNYLNQCSSK 918 Query: 704 -ETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIE------ 756 K N I +M SGA+GS +Q++ G + Sbjct: 919 GVMNDLLSDGLLKTPGRNCISLMTISGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKT 978 Query: 757 --------------TPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVD 802 I+ F GL +Y+ R+GL DTA+KT+ SGYL R L+ Sbjct: 979 LPCFHPWDWSPRAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMK 1038 Query: 803 VAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGR-----VTAEDVLKPGTADIL 857 + L V D + G D + R + + + + VL+ + D+L Sbjct: 1039 NLESLKVNYDCTVRDADGSIIQFQYGEDGVDVHRSSFIEKFKELTINQDMVLQKCSEDML 1098 Query: 858 VPRNTLLHEQWC--DLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAI 915 ++ + + E V+A+ + ++ + + GE + Sbjct: 1099 SGASSYISDLPISLKKGAEKFVEAMPMNERIASKFVRQEELLKLVKSKFFASLAQPGEPV 1158 Query: 916 GVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKS---------- 965 GV+AAQS+GEP TQ+T+ TFH+ G +++ +N+K+ Sbjct: 1159 GVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAAANIKTPIMTCPLLKG 1218 Query: 966 --------VVNSSGKLVI--TSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGE 1015 + + K+ + ++ EL ++ E + + E Sbjct: 1219 KTKEDANDITDRLRKITVADIIKSMELSVVPYTVYENEVCSIHKLKINLYKP-EHYPKHT 1277 Query: 1016 TVANWDPHTMPVITEVSGFVRFTD--MIDGQTITRQTDELTGLSSLVVLDSAERTAGGKD 1073 + D + + M I +++TG + D+ + +G ++ Sbjct: 1278 DITEEDWEETMRAVFLRKLEDAIETHMKMLHRIRGIHNDVTGPIAGNETDNDDSVSGKQN 1337 Query: 1074 LRPALKI--------------VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDG--VQISS 1117 + + + +I +ED + Sbjct: 1338 EDDGDDDGEGTEVDDLGSDAQKQKKQETDEMDYEENSEDETNEPSSISGVEDPEMDSENE 1397 Query: 1118 GDTLARIP-----QESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGK 1172 +++ +ES + G+ V + ++++ + + A+ + E + Sbjct: 1398 DTEVSKEDTPEPQEESMEPQKEVKGVKNVKE--QSKKKRRKFVRAKSDRHIFVKGEGEKF 1455 Query: 1173 RRL----------------------VITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVI 1210 V G + ++ G+ + I Sbjct: 1456 EVHFKFATDDPHILLAQIAQQTAQKVYIQNSGKIERCTVANCGDPQVIYHGDNPKERREI 1515 Query: 1211 SD-----------GPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQ 1259 S+ + + V N + D+ + GV+ E I+R+ Sbjct: 1516 SNDEKKASPALHASGVDFPALWEFQDKLDVRYLYSNSIHDMLNIFGVEAAR---ETIIRE 1572 Query: 1260 MLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESF 1319 + G V + + + +G + GI + S Sbjct: 1573 INHVFK---------SYGISVSIRHLNLIADYMTFSGGYRPMSR--MGGIA----ESTSP 1617 Query: 1320 ISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMR 1371 +F+ T+ + +AA G++D L + +G +GTG R+ Sbjct: 1618 FCRMTFETATKFIVQAATYGEKDTLETPSARICLGLPALSGTGCFDLMQRVE 1669 Score = 79.1 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 31/98 (31%), Gaps = 19/98 (19%) Query: 17 FDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYK 76 ++++ + + +R SF +V P + P GL+ ++ Sbjct: 27 VESVRFSFMTEQDVRKHSFLKVTSPILHDN-VGNPFPGGLYDLKLGP------------- 72 Query: 77 RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHI 114 K C CG GHIEL P H Sbjct: 73 --KDDKQACNSCGQLKLACP---GHCGHIELVFPIYHP 105 >UniRef50_B1L739 DNA-directed RNA polymerase n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L739_KORCO Length = 1324 Score = 640 bits (1651), Expect = 0.0, Method: Composition-based stats. Identities = 223/1190 (18%), Positives = 417/1190 (35%), Gaps = 128/1190 (10%) Query: 8 LKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKD 67 + + D + L SP R F E+ +P + P + G+ R+ Sbjct: 9 PEEEILPYRLDKVIFGLISPADARKIGFIEITEPTAYD-EGGLPVQGGVLDPRLGTI--- 64 Query: 68 YECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLL 127 + C CG G IELA P HI ++K + + + Sbjct: 65 ------------NPRQRCPVCGNLPKNCP---GHFGRIELAMPVIHIGYVKRIKDVLNTV 109 Query: 128 LDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQA 187 + + + ++++ +E + ++ A Sbjct: 110 CHKCGKVLLPQERRSQLIERAHEYARDNPEKVVDDELVREVRDQVKVYAKKHKKCPHCGA 169 Query: 188 LLKSMDLEQECEQLREE-----LNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVL 242 + ++LE+ + + +E L +K++ LL F +PEW +LTVL Sbjct: 170 PVHRVELEEVYKFIVKEPEPRRLWPNEIRDILEKISDDDSLLIGFDPKKARPEWAVLTVL 229 Query: 243 PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEA 302 V P RP + L+ G + DL + ++ N +L + AP +V +E LQ Sbjct: 230 LVPPLTARPSIYLETGERSEDDLTHILVEILKANRKLNNSKKVGAPVSMVESEWDHLQYW 289 Query: 303 VDALLDNGRRGRAITGSNK--RPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360 V +N G + RPLKSL + GK+GR R+NL+GKRV++S R+VI+ P Sbjct: 290 VSVFFNNATAGMPVAMQKGTRRPLKSLFQRLSGKEGRLRKNLIGKRVNFSARTVISPDPM 349 Query: 361 LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVW----------- 409 + + + G+P ++A+ L P + + + + A+ Sbjct: 350 IDIDEVGVPVEIAMVLTVPEYVNENNIEKMKELVMRGPDEYPGANAIRKGGVTPISLKIL 409 Query: 410 -------------------DILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLH 450 + ++ V+ NR P+LH+L + ++ G +LH Sbjct: 410 QRKGKDALREAAEQLEPGDIVERHLMDGDYVIFNRQPSLHKLSMLGHRVKVLPGATFRLH 469 Query: 451 PLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGL 510 P VC YNADFDGD+M +HVP L+ +E R LM N+LSP G II QD + L Sbjct: 470 PAVCVPYNADFDGDEMNLHVPQILDGSVEVRELMGVKYNMLSPRTGGSIIGARQDFITAL 529 Query: 511 YYMTRDC-VNAKGEGMVLTGPKEAERLYRSGLAS---LHARVKVRITEYEKDANGELVAK 566 Y +T+ + K E + +L + L ++ KD N E +AK Sbjct: 530 YMITKKDALFDKNEATRILSRAGITQLPEPAIKRPKRLWTGKQLISMLLPKDLNFEGIAK 589 Query: 567 TSLKDTTVGRAIL-----WMIVPKGLPYSIVNQALGKKAISK---MLNTCYRILGLKPTV 618 +++K + +I L +++ + + +++ R G + Sbjct: 590 SAVKASECKDPSCLGDGYVLIREGKLLSGVLDDNIVGTLVKGRLTLIDVLIRDYGEDVAI 649 Query: 619 IFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAE----AEVAEIQEQFQSGLVT 674 F ++++ G + +++IPE+ I E EV + Sbjct: 650 EFLNKLLKIASKEVLLYGITNSPKELMIPEEAKREIEEIYSNMKEEVTRLIRSRPITRKI 709 Query: 675 AGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSA 734 R + + + ++ + + + +++ +MA +GARGS Sbjct: 710 TIYRTKEELLRIMREEQMLEFDIVQTMDSFWGKVSSVISKYIDPKSNVSIMAKTGARGSM 769 Query: 735 AQIRQLAGMRGLMAK----------------------------PDGSIIETPITANFREG 766 A + Q+ G G + ++ G Sbjct: 770 ANLAQIVGQVGQQKVKTRIGFVLTSGRPRKGYKDRVLSYFQRGDLSPEARGFVKNSYVSG 829 Query: 767 LNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVI 826 LN ++ +R+ L D +T +SGY RR+ + +D+ V+ D+ + Sbjct: 830 LNPAEFIFHAMSSRESLIDKGRRTEDSGYFYRRVANSLKDVYVSYDETVRDSMGHIIQFK 889 Query: 827 EGGDVKEPLR---------DRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSV 877 GGD +P + +R++ + E+ + + D + L + Sbjct: 890 FGGDGYDPTKLFRNEPVNLERIIRKYVKEERKRGVSKDKIEELLKE------ANLPLSLA 943 Query: 878 DAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHI 937 DA+ + + G + IG+I+AQSI EP TQ+ +RTFH Sbjct: 944 DAIHGARPKESELKEIIAELKEG---FERAKVEVLTPIGLISAQSIAEPTTQMVLRTFHA 1000 Query: 938 GGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKV 997 G + + K ++ ++ + + K++ + + Sbjct: 1001 PGLLAMDVTHGVERFKELVFYASTSTPTMKIYLKQKCQEDISNLRKILRNLKELRVRDLI 1060 Query: 998 PYGAV------LAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTD 1051 A+ L ++ + + + G ++ D + I + Sbjct: 1061 EEYAIDNFNYRLTIKPDKRALENNMIPM-ERFLNIIRATAKGMKGEVELEDDRIIVDLYE 1119 Query: 1052 ELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFL 1101 L L S K + I A V G +Y + Sbjct: 1120 AAERDKPLQTLRSWSYRILDKPVSGVRGIKRAWVETVETDGR---KEYII 1166 >UniRef50_Q5CWY0 DNA-directed RNA polymerase n=3 Tax=Cryptosporidium RepID=Q5CWY0_CRYPV Length = 1871 Score = 639 bits (1648), Expect = 0.0, Method: Composition-based stats. Identities = 201/1003 (20%), Positives = 347/1003 (34%), Gaps = 131/1003 (13%) Query: 13 KTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLC 72 K +A++ + D I + EV E T P + G+ +R+ D + Sbjct: 33 KRRNIEAVEFSAMGKDEIARSAHMEVLHREIYRPMTNIPLQGGVLDSRLGAHRADAQ--- 89 Query: 73 GKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPL 132 C CG + G+I+L P H+ + K + +L Sbjct: 90 ------------CSSCGGTLKTC---GGHWGYIDLQQPVFHVGYFK----HLYGVLCCIC 130 Query: 133 RDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKS- 191 + L + L E + + Q L+ Sbjct: 131 KSCGAFLLKGEEKRQHLARLKQSYSIAHSYRLQFRKLVERCKKVKTCPRCMSQQGQLRRT 190 Query: 192 --------MDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLP 243 M L + +E E + + L +R+ + + KP ++++ LP Sbjct: 191 IRPTLDQFMKLTHTIKVDGKEYVEDLTPIFVQTLLERVPYQDLDILETFKPGNLLISRLP 250 Query: 244 VLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAV 303 V P +RP V + DL + + + NN +K + + LQ Sbjct: 251 VPPNCIRPSVTMGESGSNEDDLTVILSEITDLNNIIKSQMKSGFQTFQLLGNWEFLQLQC 310 Query: 304 DALLDNGRRGRAITGSNK---RPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360 L++ G ++K + + + +KGK+GRFR NL GKRVD+SGR+VI+ P Sbjct: 311 TRLINADAPGVNQLLASKNIPKAGRGVCQRLKGKEGRFRGNLSGKRVDFSGRTVISPDPN 370 Query: 361 LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAA----------------------- 397 + + + +P +A +L P + + L + Sbjct: 371 IEVDEVVVPMIIAKKLTYPERVNAINIDSLREAVLNGHDIWPGACYVYKSNGSKSSLRYA 430 Query: 398 KKMVEREEAVVWD-ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAA 456 + V E + D + + VL NR P+LHRL I + + V++ + + + CA Sbjct: 431 NRRVVSERLEIGDIVERHMKTGDIVLFNRQPSLHRLSIMSHKVVVMPWRTFRFNECACAP 490 Query: 457 YNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRD 516 YNADFDGD+M +H+P A+ E++ LM NN+++P NGEP+I +QD +LG+Y +T Sbjct: 491 YNADFDGDEMNLHLPQNELARSESKHLMGLMNNLVTPRNGEPLIAATQDFLLGMYVLTGR 550 Query: 517 CVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTS-------- 568 + + +K K ++ S Sbjct: 551 DIFLTRDQFSQYC-CHFSNGQIPMELPPPTILKPVELWTGKQVFNMILRPNSNEKERIDV 609 Query: 569 --------------LKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGL 614 LKD + + + L +I + LG + + Sbjct: 610 SFELKERDYDSKSDLKDLCPNEGYVVVRHSELLAGAIGKKVLGGGSKEGLFFYILLENNA 669 Query: 615 KPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEK----KHEIISEAEAEVAEIQEQFQS 670 K + +I Y A G ++GIDD+ + K ++ + V + ++ Sbjct: 670 KKSSECMGRISRFVSRYLANKGMTIGIDDVTPNAELLVAKKNLLEDGYQRVQDEINSYEK 729 Query: 671 GLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGA 730 G +T + D + + L N +M SGA Sbjct: 730 GKLTPHPGLSLE--------DTLELKVKKILDDIRNEAGKASHISLPPSNKPLLMYLSGA 781 Query: 731 RGSAAQIRQLAGMRGLMAKPDGSI--------------------IETPITANFREGLNVL 770 +G I Q+ G I + +F GL Sbjct: 782 KGQLINIAQMVACVGQQNVAGQRIQNGFTNRTLPHFKMNCVDGRSRGFVGNSFFSGLQPD 841 Query: 771 QYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGD 830 ++F T R+GL DTA+KTA +GY+ RRLV +DL + D + I G D Sbjct: 842 EFFFHTMSGREGLVDTAVKTAETGYMQRRLVKALEDLCIKYDQTVRTSDGQIIQFIYGDD 901 Query: 831 VKEP-LRDRVLGRVTAEDVLKPGTADILVPRN-TLLHEQWCDLLEE-------------- 874 P L + L V + K + V N L + + LE Sbjct: 902 GLNPMLMEEKLELVNFGKLFKHIYSQTKVHSNFYFLFNNYLNFLENQPLKNDLNISENPK 961 Query: 875 --NSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAI 915 NS + + S SCD++ + R++ R ++ + Sbjct: 962 PSNSKRSKRKSSTNSCDSNSTMEETKNDRNIHRFKLLPPSNEV 1004 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 90/473 (19%), Positives = 164/473 (34%), Gaps = 99/473 (20%) Query: 898 CYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGS 957 I GEA+G IAAQSIGEPGTQ+T++TFH G AS + Sbjct: 1447 KASWSKYMKAITEPGEAVGAIAAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPR------ 1500 Query: 958 IKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETV 1017 +K ++N++ K++ +L+ +F ++ G+++ E V+ E + Sbjct: 1501 -----IKEIINAATKILTPIIEAKLENDSDFNY----AQIVKGSIVKTLLNEVVSDIEEL 1551 Query: 1018 ANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPA 1077 + + G I +E T + +++ P Sbjct: 1552 YSPN---------------------GVFININLNEETIKGHYLDINAYTVRDSIVSHGP- 1589 Query: 1078 LKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGG 1137 I + I D+ L G I Q+ +G G + G Sbjct: 1590 --ISKIKLKLEDIQVLDLWKLSILIGGGISQIGSSSNNINGT---------GNVNTLNTG 1638 Query: 1138 LPRVADL-FEARRPKE---PAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKW 1193 + ++ F+ + K+ +++ I GI K + + Y + + Sbjct: 1639 IGNTMNVYFQTQLLKKGLQNVVVSGIPGIKRSVIRQDDKEDPIT--GEKRKCYSLAVEGY 1696 Query: 1194 RQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHI 1253 L + + + ++ + G+ A + I+ EVQ + I+ +HI Sbjct: 1697 GLLKLMGINGIIG---TTTVSNHVMEVREVLGIEAARKVIIQEVQKCMDAYSMDIDLRHI 1753 Query: 1254 EVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKAS 1313 +++ M + D+LGI++ Sbjct: 1754 QLLADIMT----------------------------------------FRGDVLGISRFG 1773 Query: 1314 LAT--ESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 + S + ASF+ET L EAA + D + G+ E VI+G+ I GTG Sbjct: 1774 IQKMRTSTLMLASFEETNEHLFEAAFQNRVDPVFGVSECVIMGKPIKIGTGSF 1826 >UniRef50_Q110H2 DNA-directed RNA polymerase subunit gamma n=543 Tax=cellular organisms RepID=RPOC1_TRIEI Length = 672 Score = 638 bits (1646), Expect = 0.0, Method: Composition-based stats. Identities = 343/625 (54%), Positives = 449/625 (71%), Gaps = 26/625 (4%) Query: 16 EFDAIKIALASPDMIRSWS---------FGEVKKPETINYRTFKPERDGLFCARIFGPVK 66 FD +KI LASPD IR W GEV KPETINYRT KPE DGLFC RIFGP K Sbjct: 7 RFDYVKIGLASPDRIRGWGERTLPNGTVVGEVTKPETINYRTLKPEMDGLFCERIFGPAK 66 Query: 67 DYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGL 126 D+EC CGKYKR++HRG++CE+CGVEVT+++VRR RMGHI+LA+P H+W+LK +PS + + Sbjct: 67 DWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGHIKLAAPVTHVWYLKGIPSYMAI 126 Query: 127 LLDMPLRDIERVLYFESYVVIEGG-MTNLERQQILTEEQYLDALEEFGDE------FDAK 179 LLDMPLRD+E+++YF +YVV+E G +L +Q+L+E+ +L+ ++ E D Sbjct: 127 LLDMPLRDVEQIVYFNAYVVLEPGNHESLSYKQLLSEDVWLEIEDQIYSEDSEIVGVDVG 186 Query: 180 MGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMIL 239 +GAEA+Q LL ++DLE E E+LREE+ + KR KL KR+++++ F+ +G++PEWM+L Sbjct: 187 IGAEALQVLLANLDLEVEAEKLREEIANSKG-QKRAKLIKRLRVIDNFIATGSRPEWMVL 245 Query: 240 TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRML 299 +PV+PPDLRP+V LDGGRFATSDLNDLYRRVINRNNRL RL ++ AP+II+RNEKRML Sbjct: 246 DAIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIIRNEKRML 305 Query: 300 QEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP 359 QEAVDAL+DNGRRGR + G+N RPLKSL+D+I+GKQGRFRQNLLGKRVDYSGRSVI VGP Sbjct: 306 QEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRSVIVVGP 365 Query: 360 YLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREH 419 L ++QCGLP++MA+ELF+PF+ +L +GL IKAAKK++++ + VWD+L+EVI H Sbjct: 366 KLAINQCGLPREMAIELFQPFVIHRLIRQGLVNNIKAAKKLIQKGDPNVWDVLEEVIDGH 425 Query: 420 PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLE 479 PV+LNRAPTLHRLGIQAFEP+L+EG+AIQLHPLVC A+NADFDGDQMAVHVPL+LE+Q E Sbjct: 426 PVMLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLSLESQAE 485 Query: 480 ARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKG-EGMVLTGPKEAERLYR 538 AR LM+++NN+LSPA G PII PSQD+VLG YY+T + +G + + P + Y+ Sbjct: 486 ARLLMLASNNVLSPATGRPIITPSQDMVLGCYYLTAENHKLQGSKALYFANPDDVILAYQ 545 Query: 539 SGLASLHAR--------VKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYS 590 LH V++ + E+ L T + ++P L Sbjct: 546 QDKIDLHTYVYLRLAPDVEIETDKPEEIPPDIQQISDELVVHTYWMPLDSKVLPNTLGEL 605 Query: 591 IVNQALGKKAISKMLNTCYRILGLK 615 Q + K N + Sbjct: 606 KSEQKCENGDLVKAYNLYRIHYSQE 630 >UniRef50_A8QBY2 DNA-directed RNA polymerase n=1 Tax=Malassezia globosa CBS 7966 RepID=A8QBY2_MALGO Length = 1673 Score = 638 bits (1644), Expect = 0.0, Method: Composition-based stats. Identities = 229/1484 (15%), Positives = 444/1484 (29%), Gaps = 333/1484 (22%) Query: 167 DALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEA 226 + G+E D++ E L ++ L +E + + ++L + + Sbjct: 225 QTIRAAGNEPDSESTIETAITLKEARKLSKEAGDHTRVVPASECRANLRRLFANESEICS 284 Query: 227 FVQSGNKP---------EWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINR-- 275 + + + L V+ V P RP + F + N+L +++N Sbjct: 285 LIFGRHPMFGSTPAPSADVFFLEVICVTPTRFRPASVMGDQTF-ENPQNELLTKILNTAF 343 Query: 276 -----NNRLK-RLLDLAAPDIIVRNEKR------------------------MLQEAVDA 305 N R + P + NE++ LQ +V+ Sbjct: 344 FVRDCNERAQVYQTKANYPVLDEMNEQQAITAQKQWEMDRRAAMDQLLSAIMQLQVSVNC 403 Query: 306 LLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQ 365 +D+ + + + ++ K+G FR++++GKRV+++ RSVI+ + ++ Sbjct: 404 YMDSSKNPAPQRQ-GQAATPGVKQGLEKKEGLFRKHMMGKRVNFAARSVISPDVNIETNE 462 Query: 366 CGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWD--------------- 410 G+P A L P + + + AV + Sbjct: 463 IGVPPVFAKRLTYPEPVTVHNYELMRQLVINGPDVYPGAHAVRGEDGTDTLLKNLSVEER 522 Query: 411 -------------------------------------ILDEVIREHPVLLNRAPTLHRLG 433 +L + +++NR PTLH+ Sbjct: 523 TALANQLLTPQGQTSRQARGTFGGIGGTLRTPVINKQVLRHLRTGDILVMNRQPTLHKPS 582 Query: 434 IQAFEPVLIEG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILS 492 + A +++G + I++H C +YNADFDGD+M +H P + A+ E + + N L Sbjct: 583 MMAHRARVLQGERTIRMHYANCNSYNADFDGDEMNMHFPQSQMARAECYNIANTDNQYLV 642 Query: 493 PANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVR 551 P +G P+ QD V+G +MT ++ + + E Y G + Sbjct: 643 PTSGNPLRGLIQDHVVGGVWMTCKNTLYTRDEYQQFIFGAIRPETYGQG--GRIRTLPPA 700 Query: 552 ITEYEKDANGELVAKTSLKDTT-----------------------VGRAILWMIVPKGLP 588 I + + G+ V T L + T + ++ L Sbjct: 701 ILKPKPRWTGKQVISTILCNVTPPHAQGLNMDAKARVGAKYWGEQHKEEEMVVVRDGELL 760 Query: 589 YSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPE 648 +++++ + +++ Y I G + + + S +DD+V+ Sbjct: 761 TGVLDKSQIGASAYGLVHAVYEIYGAESAGRLLSIFSRLFTMWLQHNAFSCRMDDLVLSS 820 Query: 649 KKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAM----------- 697 + + + A + V G+ +K + R+ + + Sbjct: 821 EGDATRQKILKDGATHGLEAALNNVGLGDGDSKAPETHRNLRVRLEEVLRDDNKLAALDA 880 Query: 698 ------MDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM---- 747 + + N++ MMA SGA+GSA + ++ + G Sbjct: 881 AMMSASNKLTSSVISSCIPSGLWRVFPENNMQMMAVSGAKGSAVNVSSISCLLGPQALEG 940 Query: 748 ----------AKPDGSIIE------TPITANFREGLNVLQYFISTHGARKGLADTALKTA 791 P E + F G+ +Y+ R+GL DTA+KT+ Sbjct: 941 RRVPVMVSGKTLPSFKAFETAARAGGFVAGRFLTGIAPQEYYFHCMAGREGLIDTAVKTS 1000 Query: 792 NSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKP 851 SGYL R L+ + + V D + + G D + + + L R Sbjct: 1001 RSGYLQRCLIKHLEGISVQYDQTVRNSDGFVLQFHYGEDSLDVSKSKYLDRFDFTIQNFE 1060 Query: 852 GTADILVPRNTLLH------EQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYG----- 900 P + + V SV S FG + + Sbjct: 1061 SYRRRYNPVQLESTMEVEKAPDYMKRALKKPYKYAPVMSVYSPARHFGSMSETFAQKVED 1120 Query: 901 ----------------------------------------RDLARGHIINKGEAIGVIAA 920 + L ++ GE +G++AA Sbjct: 1121 YVSKNPRALLARKKKDSASEGVPMQLAHPKLSTEAFRAMTKVLYHRGLVEPGENVGLLAA 1180 Query: 921 QSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKS--------------- 965 Q IGEP TQ+T+ TFH G + +++ ++K+ Sbjct: 1181 QGIGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASKDIKTPVMRLPILDGVTNEQ 1240 Query: 966 --VVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPH 1023 + G ++ S+ E + E K L + E ++ Sbjct: 1241 MRIFCKDGSRLVLSQIIEEATVTERMMPKTPANGYQRQKLYTVRLQFYPADEVKQEYNAS 1300 Query: 1024 TMPVITEVSGFVR-FTDMIDGQTITRQTDELTGLSS-----LVVLDSAERTAGGKDLRPA 1077 T +++ + + + + R + S +S + Sbjct: 1301 TEHILSGLEATFVPLVEREIVRELKRLRRDQVRQSQSIGRGETFNESMAERDADVPIYRN 1360 Query: 1078 LKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQ----------------------------L 1109 D+ D + K Sbjct: 1361 AAANDSDDEDERLSEAGDDDDDATAAKRRANAGSKVSYDDAADAEDDRAKDTTDDITRAF 1420 Query: 1110 EDGVQISSGDTLARIPQESGGTKDITGGLPRVADL------------------------- 1144 D I GD A Q+ G + I RV +L Sbjct: 1421 NDADDIEDGDEQALSAQKDVGDEAIDA---RVTELDERLQNESKFVVSFRFDSVAGAWAE 1477 Query: 1145 FEARRPK---EPAILAEISGIVS--FGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVF 1199 F+ + + ++ I + E R++I P DP + + L Sbjct: 1478 FDLQMLNSTEKMLLINVIERVCRASVVHEIPRISRIMIPPPVPGDPSVALTAEGINLPGM 1537 Query: 1200 EGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQ 1259 D+ +L GV A IV+E++ ++ G+ ++ +H+ +I Sbjct: 1538 WDFGFGVVDLDRIYSNDIGALLYCYGVEAARAAIVSELKGIFDTYGIGVSMRHMFLIADY 1597 Query: 1260 MLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESF 1319 F G + S Sbjct: 1598 QTA-----FGDFRPFSRGGLADA----------------------------------PSP 1618 Query: 1320 ISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGY 1363 + ASF+ T L+ A++ + D+L N++VGR + +GTG Sbjct: 1619 LLKASFEMTMAFLSGASLFQEMDDLTSPSSNIVVGRPVRSGTGA 1662 Score = 51.8 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 21/69 (30%), Gaps = 4/69 (5%) Query: 97 VRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLER 156 GHIEL +P H F+ S LL + + +L Sbjct: 5 ECPGHFGHIELPAPVFHPLFMNHAYS----LLRGTCLYCHHFKISKMALAKYTAQFHLLE 60 Query: 157 QQILTEEQY 165 ++ E + Sbjct: 61 YGLVDEAER 69 >UniRef50_P09846 DNA-directed RNA polymerase subunit A' n=4 Tax=Methanobacteriaceae RepID=RPOA1_METTW Length = 865 Score = 637 bits (1643), Expect = 0.0, Method: Composition-based stats. Identities = 206/903 (22%), Positives = 352/903 (38%), Gaps = 121/903 (13%) Query: 14 TEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCG 73 ++ I L SP+ IR S ++ P+T + + P + L R+ Sbjct: 5 LKKISQINFGLMSPEDIRKMSVAQIVTPDTYDEDGY-PIENELMDPRLGVIGSSLR---- 59 Query: 74 KYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLR 133 C CG + + G I LA P H+ F ++ + + R Sbjct: 60 -----------CRSCGAKGGECP---GHFGSINLARPVIHVGFADTIHKILSSICRKCSR 105 Query: 134 DIERVLYFESYV-VIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSM 192 + + Y I M E + +E Y +A D E Q + + Sbjct: 106 ILLTETEIQDYRQRILEAMEREESLTPIIKEIYAEA------RRDRCPHCEEEQEEI-KL 158 Query: 193 DLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPL 252 D + +L + + +++T LL +PEWM+LTVLPV P +RP Sbjct: 159 DKPVSIVEGDYKLTPSEVRERLERITDNDSLLLGVNPEVARPEWMVLTVLPVPPVTVRPS 218 Query: 253 VPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRR 312 + L+ G + DL ++ N RLK ++ AP +IV + +LQ V DN Sbjct: 219 ITLETGERSEDDLTHKLVDILRINQRLKENMEAGAPQLIVEDLWELLQYHVTTYFDNEAS 278 Query: 313 GRAI-TGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKK 371 G + RPLK+LA +KGK+GRFR NL GKRV++S R+V++ P + +++ G+P+ Sbjct: 279 GVPPARHRSGRPLKTLAQRLKGKEGRFRSNLSGKRVNFSARTVVSPDPNVSVNEVGVPEL 338 Query: 372 MALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVV----------------------- 408 +A E+ P + + + I+ + V+ Sbjct: 339 IAKEVTVPVYVTEWNIDRMKEHIENGPDVHPGANYVIRPDGRKIRAYNETKDVVLENLKP 398 Query: 409 -WDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMA 467 + + + VL NR P+LHR+ + A E ++ K +L+ VC YNADFDGD+M Sbjct: 399 GYIVERHLKDGDIVLFNRQPSLHRMSMMAHEVRVLPYKTFRLNLCVCPPYNADFDGDEMN 458 Query: 468 VHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVL 527 +HV T E++ EA+ LM ++ILSP +D+ G+Y + + Sbjct: 459 MHVFQTEESRAEAKTLMRVQDHILSPRF--------RDLSSGVYTTISQEHTSSQGKRLF 510 Query: 528 T------GPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLK-----DTTVGR 576 + P+E ++ D N +A+ K + Sbjct: 511 SVRSRPPDPQEGRAPPPDREGREWTVKEIFSMVLPDDLNMVYLAEICRKCDECLEMDWEN 570 Query: 577 AILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSG 636 +I L ++++ K+L+ + G F D A +G Sbjct: 571 DAYVVIENGQLITGVIDEKAYGAFAGKILDQIVKEYGSDAAKEFLDSATKLAIAGIMHAG 630 Query: 637 ASVGIDDMVIPEKKHEIIS----EAEAEVAEIQEQFQSGLVTAGER-------YNKVIDI 685 + +D IPE+ E I AEA V ++ E +++G + K++ + Sbjct: 631 FTTSTNDEEIPEEAKERIEAHLRNAEARVDQLIEAYENGELEPLPGRSLEETLEMKIMQV 690 Query: 686 WAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRG 745 A D+ + + N +MA +GARG+ + Q+ G Sbjct: 691 LGEAKDKSGEIAESYFDMDE--------------NHAVIMALTGARGAMLNLTQITACVG 736 Query: 746 LMAKPDGSI--------------------IETPITANFREGLNVLQYFISTHGARKGLAD 785 + G I + ++++E +L++ G R+GL D Sbjct: 737 QQSVHGGRITRGYDNRTLPHFKKGELGAKSRGFVHSSYKEDSILLEF----MGGREGLVD 792 Query: 786 TALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTA 845 TA++TA SGY+ RRLV+ QDL V E+ ++ G D +P + G++ Sbjct: 793 TAIRTAQSGYMQRRLVNALQDLTVDENGRVVDNRGVIIQTRFGEDGVDPAKSDY-GKIVD 851 Query: 846 EDV 848 D Sbjct: 852 LDK 854 >UniRef50_O77165 DNA-directed RNA polymerase (Fragment) n=3 Tax=cellular organisms RepID=O77165_9EUKA Length = 1690 Score = 636 bits (1639), Expect = e-180, Method: Composition-based stats. Identities = 180/813 (22%), Positives = 312/813 (38%), Gaps = 88/813 (10%) Query: 98 RRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMT-NLER 156 GH+ LA H+ +++++ + + R + S + G + N Sbjct: 1 CPGHFGHVTLAKAVYHLAYIRTVCRVLQCVCMNCSRLLVDRKISASTRLRNGAVRLNEVS 60 Query: 157 QQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMD---LEQECEQLREELNETNSET- 212 + L + + + + + G A Q L + + EL E Sbjct: 61 KMCLQYKTCGECAVKTENAQVTRTGCGARQPLWRVSKLSITRVPRDSSGGELPEVQDSEE 120 Query: 213 ---KRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLY 269 K ++ +L +PEWM++T+LPV P +RP + A DL Sbjct: 121 VVRILKNISDEDCVLIGLNPRFARPEWMMITLLPVPPMTVRPSIAFGSVGRAEDDLTKQL 180 Query: 270 RRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLAD 329 ++ N ++++L A I +++ +LQ V DN + RP+KSL++ Sbjct: 181 STIVKNNAQIRKLKLDGAAPINIQDTLDVLQINVACFFDNSVPSLEKAKNGNRPIKSLSE 240 Query: 330 MIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRG 389 ++GK+GR R L+GKRVD+S RSVIT P L L++ G+P+ +A L P + L + Sbjct: 241 RLRGKEGRVRGQLMGKRVDFSARSVITPDPTLALNELGVPRTVASNLTVPEMVSPLNIHR 300 Query: 390 LATTIKA------AKKMVEREEAVV--------------WDILDEVIREHPVLLNRAPTL 429 LA ++ K V R++ + I ++ V+ NR P+L Sbjct: 301 LAALVRNGPGTYPGAKYVIRDDGARIALTSRGDMPIVPGYIIERHLMDGDHVVFNRQPSL 360 Query: 430 HRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNN 489 H++ + + ++ + +L+ V YNADFDGD+M +HVP +LEA E + LM Sbjct: 361 HKMSMMGHQVRVLPYSSFRLNLSVTTPYNADFDGDEMNMHVPNSLEAISEVKNLMAVPFQ 420 Query: 490 ILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVK 549 I++P P + QD +LG ++R + M+ Y A ++ Sbjct: 421 IVTPQKNSPCMGVVQDSLLGCSLISRRDTFLTEDVMMNLAL---VISYDPDKIPQPAILR 477 Query: 550 VRITEYEKDANGELVAKTSLKDTTVGRAILWM------------------------IVPK 585 + K A L+ K G I Sbjct: 478 PKPLWTGKQAFSMLLPKDLSYKGKCGFYFNAEQSVSREVAAAQEEYMNSLLDSVVRIKKG 537 Query: 586 GLPYSIV-NQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDM 644 L ++ N+A+GK +++ ++ G F ++ AY G SVG +D Sbjct: 538 QLHTGVITNKAVGKSGQGSIIHILWKDQGPMAARDFLSRVQLLTNAYILTRGFSVGTEDT 597 Query: 645 VIPEKK----HEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDN 700 + I A+ V + ++G + + V A N + Sbjct: 598 LADPDTLQAVKAEIEGAKRNVKIHIDDARAGRLKVQAGRSLVESFEAKTN--------KS 649 Query: 701 LQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSI------ 754 LQ N+ +M +SG++GS I Q+ GM G I Sbjct: 650 LQDALSNAGKKSLSSLKYDNNFKLMIESGSKGSEMNICQITGMVGQQNVEGKRIAFGFQR 709 Query: 755 --------------IETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRL 800 + ++ GL+ ++F G R+GL DTA+KT+ SGY+ R+L Sbjct: 710 RTLPHFRKDDYEPEARGFVENSYVSGLSPQEFFFHMMGGREGLIDTAVKTSESGYIQRKL 769 Query: 801 VDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKE 833 + +D+ V D + M+ G D + Sbjct: 770 MKSMEDISVKYDTTVRNAAGMILQFAYGEDGID 802 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 94/603 (15%), Positives = 186/603 (30%), Gaps = 91/603 (15%) Query: 775 STHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEP 834 GAR D + G R + Q ++E T + + D+ Sbjct: 876 HATGARD---DNVFLPVHVG---RIIAKAKQHYHISET---TRSDLSPADIYTTLDLLIT 926 Query: 835 LRDRVLGRVTAE-DVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFG 893 + G AE P + T+ L + ++ G Sbjct: 927 RELNITGAAYAEGRRADPLGEEQRSTALTMFAIMLRAQLASKVMILKHHITLDCWGYIIG 986 Query: 894 VCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVK 953 +GR ++ GE +G IAAQS GEP TQ+T+ TFH G ++ ++K Sbjct: 987 EVREKFGR-----ALVAPGEMVGAIAAQSFGEPTTQMTLNTFHSAGVGTKNVTLGVPRLK 1041 Query: 954 NKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAG 1013 ++ + + + N + + D F ++E+ + + V+ Sbjct: 1042 ELINV-------------NMALRTPNISIFVQDPFCNSEENATKVPLHIKHTTVRDLVSR 1088 Query: 1014 GETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKD 1073 E + + M V+ +++G F + + + + + Sbjct: 1089 AEIIYDP----MYVVDQMTGEAYFD--CTRTVVPEDEFFVQDNYMQADRLNYQTHSYSSF 1142 Query: 1074 LRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESG---- 1129 + + L + + A+ + ++ R+ +E Sbjct: 1143 VLRVMLDTKVMQQMELKEESVVSIVKAEFEDAVEIISTVNDLNKPRMRIRLVRERAEAEA 1202 Query: 1130 ------GTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGS 1183 G D + + + + + +G + Sbjct: 1203 AVDEDRGEDDRLRDMEEIIMGLHVHGIRGMTKVMVDDSRTEKWVDERGALQTRRFWPLDG 1262 Query: 1184 DPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRL 1243 + ++ P + V D + I + GV A ++ E++DV Sbjct: 1263 EVKKDTAPPLLDVMVH-----PAVDPYRTTTNSITVINDVLGVEAARAALLKELRDVLGF 1317 Query: 1244 QGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYS 1303 G IN +H+ ++V M + Sbjct: 1318 DGSYINIRHLLMLVDVMT----------------------------------------FR 1337 Query: 1304 RDLLGITKASLATE--SFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGT 1361 L+ IT+ + + ASF+ET VL +AA DELRG+ +N+++G++ P GT Sbjct: 1338 GYLMSITRFGMNRTDNGILMRASFEETVDVLQDAAQFAGHDELRGVSDNIMLGQVAPVGT 1397 Query: 1362 GYA 1364 G Sbjct: 1398 GTF 1400 >UniRef50_Q86H36 DNA-directed RNA polymerase I subunit rpa1 n=1 Tax=Dictyostelium discoideum RepID=RPA1_DICDI Length = 1615 Score = 631 bits (1626), Expect = e-179, Method: Composition-based stats. Identities = 230/1393 (16%), Positives = 449/1393 (32%), Gaps = 263/1393 (18%) Query: 187 ALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQ----------------- 229 L + +E + KKL + K + + Sbjct: 264 KLPTNFSSVKEQTEHGTWFAPWEVLDNMKKLFENEKEILDMLLGHLVPIVTNKGGAKKNV 323 Query: 230 -----SGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLD 284 + + + + V PV P RP ++G R + N Y+ ++ N +++ +D Sbjct: 324 GRQFTKESNVDSLFMRVFPVTPARYRPPNFVNG-RRSEHPQNSHYKGMVKSNKMIRQSID 382 Query: 285 LAA-PDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLL 343 + N LQ V+ + DN + + + +++ K+G FR++++ Sbjct: 383 AGEGKAKFLVNSVCDLQMHVNNMYDNSKS----NSNTNEVANGIKQILEKKEGLFRKHMM 438 Query: 344 GKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAA------ 397 GKRV+Y+ R+VI+ L ++ G+P+ A L P LA + Sbjct: 439 GKRVNYAARTVISPDISLETNEMGVPQYFAKTLTFPQPVTSFNYNQLAQAVINGPEQYPG 498 Query: 398 KKMVEREEA------------------------------VVWDILDEVIREHPVLLNRAP 427 +E E V + ++ VL NR P Sbjct: 499 ANFIEDENGHLINLSKESQEKRIALSKTLLTSHPHAPRGVNKKVYRHLLSGDYVLANRQP 558 Query: 428 TLHRLGIQAFEPVLI--EGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMM 485 TLH+ GI ++ K +++H C+ YNADFDGD+M +H P +L A E R + Sbjct: 559 TLHKPGIMGHRVKVLGKNEKTLRMHYSNCSTYNADFDGDEMNIHFPQSLLASAEIREICA 618 Query: 486 STNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLH 545 + L P NG P+ QD +L +T+ + Sbjct: 619 NNYQYLVPRNGAPLRGLIQDHILTGVLLTKRDTLFTKADFQAILYA---SCWSVNTKHPI 675 Query: 546 ARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVP--------------------- 584 I + +G+ + +L T+GRA L + P Sbjct: 676 VTPPPCILKPVPLWSGKQLISAALNQLTIGRAPLNLEAPSKIPTKMWGTKGLEITRDSHV 735 Query: 585 ----KGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVG 640 + I+++ + +++TCY + + Y G + G Sbjct: 736 IIRQNEMVAGILDKGHFGASSYGLVHTCYELYDPDVAGSLLTLLGRMFTNYLQSRGFTCG 795 Query: 641 IDDMVIPEK----KHEIISEAEAEVAEIQEQF----QSGLVTAGERYNKVIDIWAAA--- 689 +DD+++ K + E + +A E + +F + A + ++K + Sbjct: 796 VDDLLMKNKEEKFRVETLKKANEEGYTVAAKFADLSKYDEQKARDFFSKALQSEREVARL 855 Query: 690 NDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM-- 747 + + K + G ++K N+ +M SGA+GS Q++ + G Sbjct: 856 DGLLKKGLNQYTSKVIDTLIPGGQQKPFPKNNFSLMTVSGAKGSVVNFSQVSCLLGQQEL 915 Query: 748 ------------AKPDGSIIE------TPITANFREGLNVLQYFISTHGARKGLADTALK 789 P + + F G+ YF R+GL DTA+K Sbjct: 916 EGKRVPRMVSGKTLPSFQAYDASARAGGFVMDRFLTGVRPQDYFFHCMAGREGLIDTAVK 975 Query: 790 TANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGR------- 842 T+ SGYL R L+ + L V D+ + G D E + L + Sbjct: 976 TSRSGYLQRCLIKHLEGLSVQYDNTVRESDGSVIQFNYGEDSLEIGKTPYLTKFPIIAEN 1035 Query: 843 -------VTAEDVLKPGTADILVPRNTLLH---------------------EQWCDLLEE 874 E +++ +V N + + Sbjct: 1036 YELFKSQFPMEQLIEQLKNQEVVEYNRSIKTQPELDPVMSKFNPSSDLGCVSESFMNQLN 1095 Query: 875 NSVDAVKVRSVVSCDTDFGVCAHCYGRDLAR----GHIINKGEAIGVIAAQSIGEPGTQL 930 + +++ + + + G R+L +++ GE++G++ AQSIGEP TQ+ Sbjct: 1096 HYIESNPQKLIKTTSNRDGKINEKDFRNLMYLYYSRSMVSPGESVGLLCAQSIGEPSTQM 1155 Query: 931 TMRTFHIGGAASRAAAESSIQVKNKGS-----IKLSNVKSVVNSSGKLVITSRNTE---- 981 T+ TFH+ G +++ ++ +N S V T + + Sbjct: 1156 TLNTFHLAGRGEANVTLGIPRLRELIMTATTKPITPLMEFQINDSTNKVETEKMAKYLEI 1215 Query: 982 ---------LKLIDEFGRTKESYKVPYG---------AVLAKGDGE---------QVAGG 1014 + + + F T +Y + ++ + + +V Sbjct: 1216 LKLSDIIKDITVQEYFQDTNRNYDIEIEFIPTLQQVLSLHRIKEKQLNKLFGEFNKVIKR 1275 Query: 1015 ETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDL 1074 + + + VR +D+++ ++T D+ D Sbjct: 1276 QVKSQGKLKVNNGDIGLGSKVRGSDLVEDDSLTINDDDAPANDDTTNNDENTSQQQPSSQ 1335 Query: 1075 RPALKIVDAQGNDVLI-----PGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESG 1129 K +D + Y + + + S + Sbjct: 1336 NKKSKSKVITQDDDSVAAKSKNKKKQNVNYEDGEEEAEEKDSDEGESEAEESDDKSDVDS 1395 Query: 1130 GTKDITGGLPRVADLFEARRPKEPAILAEIS-----------GIVS------FGKETKGK 1172 + +I+ + E+ + + IS GIV K KG Sbjct: 1396 DSDEISNSRSSNSFSDESIEFDQKKLTFTISVASDSKKVLMLGIVETEASKFVLKSCKGI 1455 Query: 1173 RRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISD-GPEAPHDILRLRGVHAVTR 1231 R + I + +N+ E + I + + IL+ GV A + Sbjct: 1456 TRCFVNEKQVGGKTHYSI-QSEGVNLSEIFELRDKLKIDEIYTNDIYAILQKYGVEACRQ 1514 Query: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRE 1291 + +E+ +V+ G+ ++ +H+ ++ M EG +R+ I N Sbjct: 1515 AVTSEISNVFAAYGISVDKRHLILLGDYMT-------------FEGGYRALNRIGIEN-- 1559 Query: 1292 LEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 S SF+ T L++A++ G D + + Sbjct: 1560 ------------------------NTSPFQKMSFETTFSFLSKASLMGDYDTVTSPSSRI 1595 Query: 1352 IVGRLIPAGTGYA 1364 ++G+++ GTG Sbjct: 1596 VLGQIVKNGTGSF 1608 Score = 89.5 bits (220), Expect = 7e-16, Method: Composition-based stats. Identities = 29/211 (13%), Positives = 63/211 (29%), Gaps = 24/211 (11%) Query: 5 LKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGP 64 + ++ EE ++ + D +R S ++ + E+ + P GL + Sbjct: 1 MSMSQSALIKEEISSVSFQFYTSDDVRKLSVKQIVEIESFDMLGG-PVPGGLHDPALGPT 59 Query: 65 VKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRI 124 C C ++ + GHIELA P + I Sbjct: 60 G---------------PAERCATCSLDFIECP---GHFGHIELAIPCYNP----VSFQTI 97 Query: 125 GLLLDMPLRDIERVLYFESYVVIE-GGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAE 183 LL + + + +T L + ++ + + K G Sbjct: 98 FKLLKNKCFHCHHFKHGKPIINQFIEELTLLFKGDVVKARNLRERNVLLRGYEEKKKGKS 157 Query: 184 AIQALLKSMDLEQECEQLREELNETNSETKR 214 + E + +++ + N+TN + Sbjct: 158 NEEGEEVMESDESDSDKMDTDENKTNGKIIC 188 >UniRef50_P10964 DNA-directed RNA polymerase I subunit RPA1 n=24 Tax=Saccharomycetales RepID=RPA1_YEAST Length = 1664 Score = 627 bits (1617), Expect = e-178, Method: Composition-based stats. Identities = 229/1507 (15%), Positives = 475/1507 (31%), Gaps = 298/1507 (19%) Query: 106 ELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLY---FESYVVIEGGMTNLERQQILTE 162 +L + G+ +D ++ + + RQ ++ + Sbjct: 218 KLVHEFHKKLLSRGKCDNCGMFSPKFRKDGFTKIFETALNEKQITNNRVKGFIRQDMIKK 277 Query: 163 EQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIK 222 ++ L+ + A ++ + + + T + + ++ + Sbjct: 278 QKQAKKLDGSNEA-----SANDEESFDVGRNPTTRPKTGSTYILSTEVKNILDTVFRKEQ 332 Query: 223 LLE--------AFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVIN 274 + + K + + VL V P R L G + N L +V+ Sbjct: 333 CVLQYVFHSRPNLSRKLVKADSFFMDVLVVPPTRFRLPSKL-GEEVHENSQNQLLSKVLT 391 Query: 275 RNNRLKRLLDLAAPDII--------------VRNEKRMLQEAVDALLDNGRRGRAITGSN 320 + ++ L D + + N +Q V+A +D+ + S Sbjct: 392 TSLLIRDLNDDLSKLQKDKVSLEDRRVIFSRLMNAFVTIQNDVNAFIDSTKA--QGRTSG 449 Query: 321 KRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPF 380 K P+ + ++ K+G FR++++GKRV+Y+ RSVI+ P + ++ G+P A++L P Sbjct: 450 KVPIPGVKQALEKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFAVKLTYPE 509 Query: 381 IYGKLELRGLATTI------KAAKKMVEREEA---------------------------- 406 + L + ++ E+ Sbjct: 510 PVTAYNIAELRQAVINGPDKWPGATQIQNEDGSLVSLIGMSVEQRKALANQLLTPSSNVS 569 Query: 407 ---VVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAYNADFD 462 + + + VL+NR PTLH+ + + ++ K ++LH AYNADFD Sbjct: 570 THTLNKKVYRHIKNRDVVLMNRQPTLHKASMMGHKVRVLPNEKTLRLHYANTGAYNADFD 629 Query: 463 GDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKG 522 GD+M +H P A+ EA L + + L+P +G P+ QD + ++T Sbjct: 630 GDEMNMHFPQNENARAEALNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTR 689 Query: 523 EGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTV-------- 574 E S + I + G+ + T L + T Sbjct: 690 EQYQQYIYGCIRPEDGHTTRSKIVTLPPTIFKPYPLWTGKQIITTVLLNVTPPDMPGINL 749 Query: 575 --GRAILWMIVPKG------------LPYSIVNQALGKKAISKMLNTCYRILGLKPTVIF 620 I KG L I++++ + ++++ + + G + Sbjct: 750 ISKNKIKNEYWGKGSLENEVLFKDGALLCGILDKSQYGASKYGIVHSLHEVYGPEVAAKV 809 Query: 621 ADQIMYTGFAYAARSGASVGIDDMVIPEK----KHEIIS-------EAEAEVAEIQEQFQ 669 + Y + + G+DD+ + + + +I+ EA AEV + + Sbjct: 810 LSVLGRLFTNYITATAFTCGMDDLRLTAEGNKWRTDILKTSVDTGREAAAEVTNLDKDTP 869 Query: 670 SGLVTAGERYNKVIDIWAA---ANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMA 726 + +R +++ + S + K+ NS+ MA Sbjct: 870 ADDPELLKRLQEILRDNNKSGILDAVTSSKVNAITSQVVSKCVPDGTMKKFPCNSMQAMA 929 Query: 727 DSGARGSAAQIRQLAGMRGLM--------------AKPDGSIIE------TPITANFREG 766 SGA+GS + Q+ + G P E + F G Sbjct: 930 LSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDAMAGGYVKGRFYSG 989 Query: 767 LNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVI 826 + +Y+ R+GL DTA+KT+ SGYL R L + + V+ D+ + + Sbjct: 990 IKPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSIRDADGTLVQFM 1049 Query: 827 EGGDVKEPLRDR--------------VLGRVTAE-------------------DVLKPGT 853 GGD + ++ +L + K + Sbjct: 1050 YGGDAIDITKESHMTQFEFCLDNYYALLKKYNPSALIEHLDVESALKYSKKTLKYRKKHS 1109 Query: 854 ADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRD----------- 902 + ++ + +V ++ + + Sbjct: 1110 KEPHYKQSVKYDPVLAKYNPAKYLGSVSENFQDKLESFLDKNSKLFKSSDGVNEKKFRAL 1169 Query: 903 ---LARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIK 959 +IN GEA+G+IA+QS+GEP TQ+T+ TFH G + + Sbjct: 1170 MQLKYMRSLINPGEAVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLGIPR-------- 1221 Query: 960 LSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVAN 1019 ++ +V ++ + T + T D +++ VL ++V ET Sbjct: 1222 ---LREIVMTASAAIKTPQMTLPIWNDVSDEQADTFCKSISKVLLSEVIDKVIVTETTGT 1278 Query: 1020 WDPHTMPVITEVSGFVRFTDMIDG-QTITRQTDELTGLSSLVVLD------SAERTAGGK 1072 + +RF D + + +EL + S + E + Sbjct: 1279 SNTAGGNAARSYVIHMRFFDNNEYSEEYDVSKEELQNVISNQFIHLLEAAIVKEIKKQKR 1338 Query: 1073 DLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAI-VQLEDGVQI---SSGDTLARIPQES 1128 P + + + + + + + + + +E+ Sbjct: 1339 TTGPDIGVAVPRLQTDVANSSSNSKRLEEDNDEEQSHKKTKQAVSYDEPDEDEIETMREA 1398 Query: 1129 GGTKD------------------------ITGGLPRV-ADLFEARRPKEPAILAEISGIV 1163 + D I + ++ + +R ++ AI++ I Sbjct: 1399 EKSSDEEGIDSDKESDSDSEDEDVDMNEQINKSIVEANNNMNKVQRDRQSAIISHHRFIT 1458 Query: 1164 SFGKETKGKR----------------RLVITPVDGSDPYEEMIPKWRQLNVFEGERVERG 1207 + + + + + I IP + E E +R Sbjct: 1459 KYNFDDESGKWCEFKLELAADTEKLLMVNIVEEICRKSIIRQIPHIDRCVHPEPENGKRV 1518 Query: 1208 DVISDG-------------------PEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKI 1248 ++++G +L+ GV A IVNE+ +V+ + + Sbjct: 1519 -LVTEGVNFQAMWDQEAFIDVDGITSNDVAAVLKTYGVEAARNTIVNEINNVFSRYAISV 1577 Query: 1249 NDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLG 1308 + +H+++I M R+ L Sbjct: 1578 SFRHLDLIADMMTRQ----------------------------------------GTYLA 1597 Query: 1309 ITKASLAT-ESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQ 1367 + + T S S++ T + LT+A + +R++L ++VG+L GTG Sbjct: 1598 FNRQGMETSTSSFMKMSYETTCQFLTKAVLDNEREQLDSPSARIVVGKLNNVGTGSFDVL 1657 Query: 1368 DRMRRRA 1374 ++ A Sbjct: 1658 AKVPNAA 1664 Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 64/220 (29%), Gaps = 30/220 (13%) Query: 10 AQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYE 69 ++ E ++ + + IR+ S ++ P ++ P GL+ + +++ Sbjct: 4 SKPVGSEITSVDFGILTAKEIRNLSAKQITNPTVLDN-LGHPVSGGLYDLALGAFLRN-- 60 Query: 70 CLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLD 129 +C CG++ GHIEL P + F L L Sbjct: 61 --------------LCSTCGLDEKFCP---GHQGHIELPVPCYNPLFFNQLYIY----LR 99 Query: 130 MPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALL 189 V L + ++ E LD + EAI+ Sbjct: 100 ASCLFCHHFRLKSVEVHRYACKLRLLQYGLIDESYKLDEITLGSLNSSMYTDDEAIEDNE 159 Query: 190 KSMDLE------QECEQLREELNETNSETKRKKLTKRIKL 223 MD E L EL SE + K + Sbjct: 160 DEMDGEGSKQSKDISSTLLNELKSKRSEYVDMAIAKALSD 199 >UniRef50_D1I9R9 DNA-directed RNA polymerase (Fragment) n=2 Tax=Vitis vinifera RepID=D1I9R9_VITVI Length = 1669 Score = 624 bits (1608), Expect = e-177, Method: Composition-based stats. Identities = 223/1434 (15%), Positives = 428/1434 (29%), Gaps = 255/1434 (17%) Query: 167 DALEEFGDEFDAKMGAEAIQALLKSMDLEQ------ECEQLREELNETNSETKRKKLTKR 220 D +++ + + GA+A +K E + E L E N ++ Sbjct: 261 DGIQDTVTKRLERKGAQAPIEFIKQKSFFSGPLLPSEVRDIMERLWE-NEAELCSFISDI 319 Query: 221 IKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLK 280 ++ + L + V P RP L +V+ N L Sbjct: 320 LQERLGASGNKAGYSMFFLETILVPPIKFRPPSK-GQISVMEHPQTVLLGKVLQANIALG 378 Query: 281 RLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPL-KSLADMIKGKQGRFR 339 + + + LQ++++ L D G+ G +R + +++ K+G FR Sbjct: 379 NAHANNSERSKIISRWMDLQQSINVLFD----GKTAAGQGQRDTGSGICQLLEKKEGVFR 434 Query: 340 QNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAK- 398 Q ++GKRV+++ RSVI+ PYL +++ G+P AL L P + L I Sbjct: 435 QKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVVKLRDAIINGPE 494 Query: 399 ----------------------------KMVEREEAVV-------------WDILDEVIR 417 + + VV + + Sbjct: 495 IHPGATHYVDKLSTVKLAVNKKMRISISRKLPSSRGVVAQPGRSSDNEFEGKIVYRHLQD 554 Query: 418 EHPVLLNRAPTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEA 476 VL+NR PTLH+ I A +++G K +++H C+ YNADFDGD+M VH P + Sbjct: 555 GDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEIS 614 Query: 477 QLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERL 536 + EA ++ + N + P+ G+PI QD ++ +T+ E Sbjct: 615 RAEAYNIVNANNQYIVPSRGDPIRGLIQDHIVSAVLLTKKDTFLTREQYNQLLYSSGLSS 674 Query: 537 YRSGLASLHAR-------------VKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIV 583 + + I + E +G+ V L T GR Sbjct: 675 GSGSFIGKPGKKVSVLDSEDEMQPLLPAIWKPEPLWSGKQVITAVLNHITRGRKPFTTEK 734 Query: 584 PKGLPYSIVNQALGKK-------------------------------------------- 599 +P + +K Sbjct: 735 DGKIPREYFGSEIDEKKSGKGKDPGSDRRKEKRIEKKHGEYKLLIHKNELVRGVIDKAQF 794 Query: 600 AISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEK----KHEIIS 655 +++ + G I + + G + G+DD++I + + Sbjct: 795 DKYGLVHMVQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDDLLISPNYDIARKIELD 854 Query: 656 EAEAEVAEIQEQF---QSGLVTAGERYNKVIDIW--------AAANDRVSKAMMDNLQTE 704 ++E + +F G + + +V I + + + + Sbjct: 855 KSENIGELVHCKFIGSNHGKIDPVKLQVEVEKIILSNGEAAITRLDRMMKNELNELTSKV 914 Query: 705 TVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIE-------- 756 K N + +M +GA+GS Q++ G + Sbjct: 915 NKDLLLKGLVKPFPKNCLSLMTTTGAKGSTVNFSQISSFLGQQDLEGKRVPRMVSGKTLP 974 Query: 757 ------------TPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVA 804 I+ F GL+ +Y+ R+GL DTA+KT+ SGYL R L+ Sbjct: 975 CFPPWDCAARAGGFISDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNL 1034 Query: 805 QDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLL 864 + L V D + G D + + + A V + + Sbjct: 1035 ECLKVCYDYTVRDSDGSIVQFNYGDDGVDVHQTSFITEFEALAVNEEVVCEKFGQDGKF- 1093 Query: 865 HEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLAR-------GHIINKGEAIGV 917 + L + K + +D + GE +GV Sbjct: 1094 -NGYIQKLPKELRKKTKKFIEGFMEERQDFDNMKKQKDFVNLVKQKYISSLAQPGEPVGV 1152 Query: 918 IAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNS-------- 969 +AAQS+GEP TQ+T+ TFH+ G +++ +++K+ + + Sbjct: 1153 LAAQSVGEPSTQMTLNTFHLAGRGEVNVTLGIPRLQEILMTAANDIKTPIMTCPLQMGRS 1212 Query: 970 ------------SGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETV 1017 + + + E+ ++ + ++ + + Sbjct: 1213 KDDAERLAAKLKKVTVADITESMEVSIVPFTVQDHQTCSIYKLKMKLYEPALYPPHTGIS 1272 Query: 1018 ANWDPHTM---PVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDL 1074 T+ V ++ + + + + D G Sbjct: 1273 LEDCEETLEAVFVRELEDAIQNHLLLLSKISGIKNFLPDSRSMASKETDEDASGDGLAGG 1332 Query: 1075 RPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDI 1134 G D + + + + G+ A + +E +D Sbjct: 1333 NGDEDDDGEDDGGAEDLGLDAQKRKQQASDEMDYGDSEGEPDEGEPSAGLTEEIDLVEDE 1392 Query: 1135 TG-------GL--PRVADLF---------------EARRPK---------EPAILAEISG 1161 G+ P+ D EA+R K + AIL + G Sbjct: 1393 VEISNNEEVGISDPKDEDSKVPSKSKSSKNKKAKTEAKRKKRFRAIKKDFDRAILVKAKG 1452 Query: 1162 --------------IVSFGKETKGKRRLVITPVDGSD-------PYEEMIPKWRQLNVFE 1200 I+ K ++ I D +++I R E Sbjct: 1453 TYFEVHFRFTNEPHILLAQIAQKAANKVYIRSSGKIDLCQVIDCNKDQVIYYGRDPKKRE 1512 Query: 1201 ---GERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIV 1257 GE ++ + +++ V N V + GV+ I+ Sbjct: 1513 NIPGEEKKKLPALQTAGVDFTAFWKMQDELDVRYVYSNNVHAMLNTFGVEAAR---ATII 1569 Query: 1258 RQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATE 1317 +++ G +V + + + +G GI + Sbjct: 1570 KEVFNVFNA---------YGVKVNIRHLSLIADFMTHSGGYRPMNRHG--GIA----ESV 1614 Query: 1318 SFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMR 1371 S S +F+ ++ + EAA G D L + +G + GTG ++ Sbjct: 1615 SPFSKMTFETASKFIVEAASHGMTDNLESASARICLGLPVKMGTGCFDLMQKIE 1668 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 19/96 (19%) Query: 17 FDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYK 76 +A+K + + + +R +SF ++ P ++ +P GL+ + Sbjct: 12 VEAVKFSFFTDEEVRKYSFKKITSPLMLDS-VQRPVPGGLYDPALGSI------------ 58 Query: 77 RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTA 112 C+ CG GHI+L S Sbjct: 59 ---DENTPCQSCGQRSFYCP---GHCGHIDLVSSVY 88 >UniRef50_A7BVC2 DNA-directed RNA polymerase n=1 Tax=Beggiatoa sp. PS RepID=A7BVC2_9GAMM Length = 761 Score = 622 bits (1604), Expect = e-176, Method: Composition-based stats. Identities = 350/750 (46%), Positives = 508/750 (67%), Gaps = 17/750 (2%) Query: 632 AARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAAND 691 A R+G ++ +++M+IP +K ++I+EA ++ +IQ+Q+Q L+T +RYNK+ID+W +D Sbjct: 2 ATRAGITLSMEEMIIPSEKPKLINEALTKIEDIQKQYQKALITNNQRYNKIIDLWTKTHD 61 Query: 692 RVSKAMMDNLQTE--TVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAK 749 +++ A++++L + + N++YMM D+G R + I QL+GMRGLM K Sbjct: 62 KMATAVLNHLSEKPRQTAKYRQASNHPLPENNLYMMIDAGIR-NLMSISQLSGMRGLMTK 120 Query: 750 PDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVV 809 PDGSI+E PITANFREGL+ QYFISTHG RKGLAD ALKTAN+GYLTRRLVDVAQD+++ Sbjct: 121 PDGSILEIPITANFREGLDAHQYFISTHGTRKGLADMALKTANAGYLTRRLVDVAQDVII 180 Query: 810 TEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWC 869 + +CGT +GI MT + + + + DR+ GRVTAED+ + +V TLL E+W Sbjct: 181 AKKNCGTTQGITMTALTKNDLLIKTFSDRIRGRVTAEDIYLQKSQKPVVKAGTLLDEKWI 240 Query: 870 DLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQ 929 + LE+ + +KVRS ++C ++ GVCA CYGRDLA+G +I+ GEA+GVIAAQSIGE GTQ Sbjct: 241 EKLEQWKIKQIKVRSPITCQSEHGVCALCYGRDLAQGQLIHVGEAVGVIAAQSIGEAGTQ 300 Query: 930 LTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSV---------VNSSGKLVITSRNT 980 LTMRT+ G A + I++ KG +K ++K + + ++ S+ Sbjct: 301 LTMRTYWN-GKIKHTATINHIKINAKGKVKFHHLKLIEQNATPNEKKKAKKPFIVVSQAG 359 Query: 981 ELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDM 1040 E+ ++D+ G+ +E +K+PYGA+L+ DG+QV G+ +A+WDP+ ++TEV+G++RF D+ Sbjct: 360 EISILDKAGQEQERHKIPYGAILSINDGDQVIVGQRIADWDPYNDLLVTEVTGYIRFVDI 419 Query: 1041 IDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYF 1100 ++G T+ +TD TGL+ L+V R K L+P + IVD N++ GT YF Sbjct: 420 VEGTTVHSETDPKTGLTILIVKAPKLRPTYAKKLQPQINIVDKNNNELTFAGTSKKVTYF 479 Query: 1101 LPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEIS 1160 LP I+ +++G ++++GD +A++P E +DIT GL RVADLFEAR PKEPAILA+ S Sbjct: 480 LPAHTIINIKEGAKVNAGDIIAKLPFEPPKIRDITDGLLRVADLFEARIPKEPAILAQCS 539 Query: 1161 GIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDI 1220 G VSFGKETK K R +IT +G E IPKWR +NV G++V+ G+++ +G PHDI Sbjct: 540 GTVSFGKETKTKHRFIITDEEGQQE-EHPIPKWRFINVSSGQQVDLGEMVVNGILNPHDI 598 Query: 1221 LRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQV 1280 LRL+G A+ +Y++NE+Q++Y G+KINDKH EVI+RQMLR TI++ G + F GE V Sbjct: 599 LRLKGPLALVKYLINEMQEIYSSYGIKINDKHFEVIIRQMLRTLTIIDPGDTPFFSGEHV 658 Query: 1281 EYSRVKIANRELEANG---KVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAV 1337 ++++ N+ + AT+ +LLGITK SL+TESFISAASF + RVL +A+ Sbjct: 659 TRNQLETENQRIAKQSPRFGRLATWEANLLGITKTSLSTESFISAASFMDAARVLLASAI 718 Query: 1338 AGKRDELRGLKENVIVGRLIPAGTGYAYHQ 1367 GK DELRG KENVI+GRLIPAGTG + Sbjct: 719 QGKYDELRGFKENVILGRLIPAGTGLKKKE 748 >UniRef50_A5K7T9 DNA-directed RNA polymerase n=1 Tax=Plasmodium vivax RepID=A5K7T9_PLAVI Length = 1946 Score = 622 bits (1603), Expect = e-176, Method: Composition-based stats. Identities = 176/948 (18%), Positives = 321/948 (33%), Gaps = 161/948 (16%) Query: 16 EFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKY 75 E ++K + + I S ++ E T P G+ ++ Sbjct: 56 EIKSLKFGIMDKEEIIKCSEVKILNREMYKNNTGIPYPYGVLDLKLGA------------ 103 Query: 76 KRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDI 135 +CE C G+IEL P H+ + K + + + + + Sbjct: 104 ---HKSNSLCETCHRNFMNCS---GHFGYIELNYPLFHVGYYKYIIYILYCICKVCSHIL 157 Query: 136 ERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLK----- 190 E Y ++ + + ++ L++ ++ + I+ ++K Sbjct: 158 LTNEKLEFYTNLKRRTVEDKFFKRHIFKKILNSCKKVTKCYRCGYPQGVIKKIIKPSLDQ 217 Query: 191 SMDLEQECEQLRE----ELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLP 246 M L+ + + + L K + + + PE +++T L V P Sbjct: 218 FMKLKHVIKTKENGKMVIKEDDLNSLYVLNLFKNMNPYHVKLLNVESPEKLLITALLVPP 277 Query: 247 PDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDAL 306 +RP V +D A DL + + NN + LQ + Sbjct: 278 NTIRPSVVIDEHGTAEDDLTCILSEITQLNNTINNQCSNGYQTNQFLGNVEFLQLQITRF 337 Query: 307 LDNGRRGRAI---TGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRL 363 +++ + T + +P + + +KGK+GRFR NL GKRVD+S R+VI+ P + + Sbjct: 338 INSDSPAVSQLLATQNISKPGRGICQRLKGKEGRFRCNLSGKRVDFSSRTVISPDPNISI 397 Query: 364 HQCGLPKKMALELFKPFIYGKLELRGLATTIKAA-------------------------- 397 + +P+ +A+ L P + + L I+ Sbjct: 398 DEVVVPESIAMRLTYPEKVNRYNMAKLKRLIRNGTSTWPGANYVIKKACGQGGASPRGDS 457 Query: 398 -----KKMV-----------------EREEAVVWDI----------LDEVIREHPV---- 421 K+ V R + I ++ + V Sbjct: 458 LIDVVKRYVGHPSGVLLPTAASVGDPRRGNPAINKISLKYANKRLVVENLQVGDVVERHL 517 Query: 422 ------LLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLE 475 L NR P+LHR+ I + +++ K + + VC+ YNADFDGD+M +HVP T E Sbjct: 518 VDGDIVLFNRQPSLHRMSIMCHKARVMKYKTFRFNECVCSPYNADFDGDEMNLHVPQTEE 577 Query: 476 AQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAER 535 A+ EA LM NN+++P NGE II +QD + Y +T + L Sbjct: 578 ARAEALYLMNVKNNLITPKNGEVIIALTQDFLSASYVITNKDTFLDRDSFCLLCS----- 632 Query: 536 LYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWM-------------- 581 Y S I + ++ G+ + +K T I+ Sbjct: 633 -YFSDAKVNIDLPVPAILKPKELWTGKQLISVLIKPNTKENTIINFEIKEREYSTKNGDL 691 Query: 582 -----------IVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFA 630 L + + + + + + ++ Sbjct: 692 KHMCLNDSYVCFYKSELICGSLGKKVLGSSKYGLFYYLIHHNSSYVALKIMNRFSKLTSR 751 Query: 631 YAARSGASVGIDDMVIPE----KKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIW 686 Y + G ++GIDD+ + KK +++ +V + + Sbjct: 752 YFSNKGMTIGIDDVTPSDTLLQKKKDLLQAGYEKVNREIALYNEKKMQIQPGC-----TL 806 Query: 687 AAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGL 746 + K ++D+L+ + + N +M +SGA+G+ I Q+ G Sbjct: 807 EETLEIKVKNILDDLRND---AGKTCNQYLDHLNKPLIMFNSGAKGALINIAQMIACVGQ 863 Query: 747 MAKPDGSI--------------------IETPITANFREGLNVLQYFISTHGARKGLADT 786 I + +F GLN ++F T R+GL DT Sbjct: 864 QNVTGQRIQNGFINRTLPHFNFHCKDSESRGFVQNSFYTGLNPTEFFFHTMSGREGLVDT 923 Query: 787 ALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEP 834 A+KTA +GY+ RRL+ +DL + D + I G D P Sbjct: 924 AVKTAETGYMQRRLMKALEDLSIHYDFSVRSCDKQIVQFIYGDDALNP 971 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 98/615 (15%), Positives = 193/615 (31%), Gaps = 123/615 (20%) Query: 842 RVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCA----- 896 R A ++ LV + +++ + + + + V +T C Sbjct: 1364 RTKAMNIFMKEIKKWLVVKAINVYKYFRHKKGLHLMRRSDYLNFVCPETYEPSCRYLIYD 1423 Query: 897 ------------HCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRA 944 + +I G+A+G I+AQSIGEPGTQ+T++TFH G AS Sbjct: 1424 YPFVNLKQLYLFIFFNVSKYFKYISAPGDAVGSISAQSIGEPGTQMTLKTFHFAGVASMN 1483 Query: 945 AAESSIQVKNKGSIKLSNVKSVVN--------SSGKLVITSRNTELKLIDEFGRTKESYK 996 ++K + + ++N + L++ S+ + + D KE Y Sbjct: 1484 VTLGVPRIKEIINASSTIQTPILNIPLQVKDSYNFALMMKSKLEKTTVRDICLYIKEDYT 1543 Query: 997 VPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGL 1056 G L+ EQ+ N + +T+ I + + +L Sbjct: 1544 A-RGIFLSVKFNEQLIHN-LFLNINAYTIRDIIMRQSHISKIKINKILVEVVDAYKLHMS 1601 Query: 1057 SSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIV--QLEDGVQ 1114 + A K L L D +I ++ + G Sbjct: 1602 LKNDEFLFFQMEALKKGLLDLLIHGDKDIKRCIIKKEEVEVTDGEASGGEESGGVVSGEL 1661 Query: 1115 ISSGDTLARIPQESGG-TKDITG-------GLPRVADLFEARRPKEPAILAEISGIVSFG 1166 + L + E + ++ G ++ + EA + +++ Sbjct: 1662 VQPSGELVQPSGELVQPSGELVQTTAKEGAGEAKLRSIMEAFDVQMKQEMSKGEIPPGAE 1721 Query: 1167 KETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGER---------------------VE 1205 E + L +D + + I + R + +R Sbjct: 1722 GEDEPVVHLDTINIDALNFEKININQIRHEKIDHYDRDGNLYSGGNGPECEEKKKKKKKI 1781 Query: 1206 RGDVISDG------------------PEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVK 1247 ++ +G ++ ++ G+ A I+NE++ + Sbjct: 1782 IYSILVEGNSLNYVLGLEGVDFKHIISNHVINVFQVLGIEAARVTIINEIKKCVEAYSID 1841 Query: 1248 INDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLL 1307 I+ +HI ++ M ++ D+L Sbjct: 1842 IDIRHIMLLADIM----------------------------------------AFTGDIL 1861 Query: 1308 GITKASLATE--SFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAY 1365 GI + + S + ASF+ET L ++ RDE+ + E++IVG+ IP GTG Sbjct: 1862 GINRFGIQKARHSTLMLASFEETNEHLFVSSFFKNRDEINNISESIIVGKNIPIGTGAFQ 1921 Query: 1366 H-----QDRMRRRAA 1375 +R R+ Sbjct: 1922 LLYDYKFNREERKLT 1936 >UniRef50_Q5KIF6 DNA-directed RNA polymerase n=5 Tax=Dikarya RepID=Q5KIF6_CRYNE Length = 1727 Score = 621 bits (1600), Expect = e-176, Method: Composition-based stats. Identities = 205/1358 (15%), Positives = 430/1358 (31%), Gaps = 250/1358 (18%) Query: 235 EWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL------------ 282 + + V+PV P RP + F + N L V++ R+++L Sbjct: 390 DMFFMEVVPVTPTRFRPAARMGDELF-ENSQNSLLTAVLSTCQRIQKLNQDLINQAKAER 448 Query: 283 ----------LDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIK 332 ++ LQ V++ +D+ + + K P + +++ Sbjct: 449 GEHVLDAVAKAQGGRTFELLLEALIKLQHDVNSFVDSTKNPAVMRQ-GKLPPPGVKQLLE 507 Query: 333 GKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLAT 392 K+G FR++++GKRV+Y+ RSVI+ + ++ G+P A +L P + + L Sbjct: 508 KKEGLFRKHMMGKRVNYAARSVISPDINIETNEIGIPPVFAKKLTYPEPVTQQNVAELRQ 567 Query: 393 TIKAAKK------MVEREEA---------------------------------------V 407 + K +V+ E+ Sbjct: 568 LVINGPKIHPGAALVQNEDGTQISLDKLTLDQRISLANQLLTPQGSEDNIGAASIGPAAK 627 Query: 408 VWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAYNADFDGDQM 466 + + V+LNR PTLH+ + ++ G K I++H C +YNADFDGD+M Sbjct: 628 NKKVYRHIRDGDIVILNRQPTLHKPSMMCHRVKVLLGEKTIRMHYANCNSYNADFDGDEM 687 Query: 467 AVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVL-GLYYMTRDCVNAKGEGM 525 +H P A+ EA+ + + N L P +G P+ QD V+ G++ + + + Sbjct: 688 NIHFPQNEVARAEAQMIANTDNQYLVPTSGGPLRGLIQDHVVAGVWMCNKSSFFTREQYF 747 Query: 526 VLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGR--------- 576 L +G + + + I + + G+ + T L + T Sbjct: 748 QLIYGALRTENNYTGRSRIIT-LPPAIFKPKPLWTGKQIMSTILTNLTPSNAKGLNLTSR 806 Query: 577 -------------------AILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPT 617 + + L +++++ + ++++ + + G Sbjct: 807 NKVQNKLWRRDDSSDPAMSEENVIFLDGHLVCGVLDKSQYGASGYGLVHSVHELYGPYIA 866 Query: 618 VIFADQIMYTGFAYAARSGASVGIDDMVIPEK----KHEIISEAEAEVAEIQEQFQ---- 669 + Y S +DD+++ + + +I+ +A + A ++ Sbjct: 867 NRLLGVLSRLLTKYLQHDAFSCRMDDLILTAEGEKIRKDILDKASGDGAIAAMKYVGLPE 926 Query: 670 -SGLVTAGERYNKVIDIWAAANDR---------VSKAMMDNLQTETVINRDGQEEKQVSF 719 S + N I + D + A + Sbjct: 927 GSKIEDPDTAKNLAIRLEEILRDDHLMAGLDAVMQSAFNKTTSKINNDVLPDHLVRPFPD 986 Query: 720 NSIYMMADSGARGSAAQIRQLAGMRGLM--------------AKPDGSIIE------TPI 759 N++ MM SGA+GS Q++ + G P + + Sbjct: 987 NNMQMMTISGAKGSKVNASQISTLLGQQALEGRRVPTMVSGKTLPSFKAFDTSARAGGYV 1046 Query: 760 TANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEG 819 F G+ +Y+ R+GL DTA+KT+ SGYL R L+ + + V D Sbjct: 1047 ANRFLTGIRPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGVKVHYDHTVRDSD 1106 Query: 820 IMMTPVIEGGDVKEPLRDRVLGRV---------------------TAEDVLKPGTADILV 858 + + G D + + L + D L Sbjct: 1107 SSVLQFLYGEDSLDVTKQTHLNKFDFAAANHLSLLNKVRPGDIAGKVSDEALSHMKKALK 1166 Query: 859 PRNTL---------------LHEQWCDLLEENS---------VDAVKVRSVVSCDTDFGV 894 + + E + L S + + Sbjct: 1167 KPHKHVPALSEYSPSRYIGSMSEAYAKKLNNYIEDNKLGYITKKGESKASPYTSERVPEK 1226 Query: 895 CAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKN 954 R ++ GEA+G++A+Q +GEP TQ+T+ TFH+ G + +++ Sbjct: 1227 EFLGLARARYMRSLVEPGEAVGLLASQGVGEPSTQMTLNTFHLAGHGAANVTLGIPRLRE 1286 Query: 955 KGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGG 1014 V+ +S K + L+ + E++ + E+V Sbjct: 1287 I----------VMTASSKPTTPTMKLPLR-EHISDKDIETFVKQVSRLTLSEVVERVTVT 1335 Query: 1015 ETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDL 1074 E +++ + + + + F + T E+T L K++ Sbjct: 1336 ERLSSKSSESDSRQRKYTVLLEFYPPEEYGT----EYEITSEQLHESLAWHFAPRLKKEI 1391 Query: 1075 RPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDI 1134 + ++ V G + +++ + + + + + Sbjct: 1392 QNEIRRVAKTKEQEAQVGKGRKVRVGGDEGDEEEVDREPDVRRRGRDDELDNDDEDSYQL 1451 Query: 1135 TGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYE------- 1187 +EA + + + +E + + Sbjct: 1452 KRAAQAKQHEYEADSDADSGVADLEDFVEKELEEDDEEDVEDDAAEKAKKDQKADDWAEL 1511 Query: 1188 -EMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHA-VTRYIVNEV------QD 1239 ++ K+ F+G + + P + +L + + +V+E+ Sbjct: 1512 FKLASKYATTFSFDGHSGKSAQFDLEFPASAPKLLLVDIIERTCRASVVHEIENIGRCMK 1571 Query: 1240 VYRLQGVKI--------NDKHIEVIVRQML---------------------RKATIVNAG 1270 ++ +G N + + + +++ + I++ Sbjct: 1572 IFSDKGEFTRSLITEGSNLRGMWALADELVDLDRLSSNDIYAILQTFGVEAARRAIIDEV 1631 Query: 1271 SSDF-LEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETT 1329 SS F G V+Y + I + G + A S + ASF+ T Sbjct: 1632 SSVFGAYGIAVDYRHLTIIADYMTHAGGFRPFNRTGI-------SAKSSPLLKASFETTV 1684 Query: 1330 RVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQ 1367 L+EA + G D+L +++G+ +GTG + Sbjct: 1685 AFLSEATLHGDFDDLTSPAAKIVMGKPSASGTGAFDIR 1722 Score = 86.1 bits (211), Expect = 8e-15, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 38/111 (34%), Gaps = 23/111 (20%) Query: 27 PDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICE 86 D I++ S +V P ++ P R GL+ ++ GP+ + +CE Sbjct: 21 ADDIKAISVKKVDNPILLDNLNL-PTRGGLYDPKL-GPMGSRD--------------LCE 64 Query: 87 KCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIER 137 C + GHIEL +P H F+ LL Sbjct: 65 TCHLSYFACP---GHFGHIELPTPVYHPLFMNQ----CYHLLRGVCLYCHH 108 >UniRef50_Q7T6X5 DNA-directed RNA polymerase subunit 1 n=1 Tax=Acanthamoeba polyphaga mimivirus RepID=RPO1_MIMIV Length = 1495 Score = 621 bits (1600), Expect = e-176, Method: Composition-based stats. Identities = 249/1554 (16%), Positives = 488/1554 (31%), Gaps = 269/1554 (17%) Query: 12 TKTEEFDAIKIALASPDMIRSWSFG----EVKKPETINYRTFKPERDGLFCARIFGPVKD 67 E + I+ + S + I S + + ET N +P + G+ R+ Sbjct: 13 DTIETVERIEFCINSNESIIRHSAIVDPNGITEAETFNSNNNEPVQGGVIDKRLGVTESH 72 Query: 68 YECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLL 127 E C CG + GHI+ P H+ + + + Sbjct: 73 LE---------------CSTCGETALRCP---GHFGHIKFVEPVFHMGY----LIYLKHI 110 Query: 128 LDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQA 187 L ++L +++ I + N + +Q E + + + + G A + Sbjct: 111 LSCICIRCNKLLVYKNEKEIAALIKNKQGKQRFAEIRSICKKVTHCQKENYGCGTPAHKI 170 Query: 188 LLKSMDLEQEC------------------EQLREELNETNSETKRKKLTKRIKLLEAFVQ 229 + + ++ ++ L K ++ ++ F Sbjct: 171 SIDKRNGNIFLLAEPVKRTDEYDETGETRKRPQQILTPQLCYDILKSVSDEDCIIMGFDP 230 Query: 230 SGNKPEWMILTVLPVLPPDLRPLVPLD--GGRFATSDLNDLYRRVINRNNRLKRLLDLAA 287 + ++PE MI+ PV P +RP + + DL +I N LK + Sbjct: 231 AKSRPEDMIILNFPVPPVQVRPSIRAEILSSPTMDDDLTHKLIDIIKSNENLKNTKGDGS 290 Query: 288 --PDIIVRNEKRMLQEAVDALLDNGRRGRA-ITGSNKRPLKSLADMIKGKQGRFRQNLLG 344 + ++ +LQ V N G A NK+ KS+++ ++GK+GR R NL+G Sbjct: 291 LIKYTSINDDFMLLQLHVATFFANDMAGLARSQQKNKKVTKSMSERLRGKEGRIRGNLMG 350 Query: 345 KRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVERE 404 KRVD S R+VIT P + L++ G+P +A L I + + L +K K++ Sbjct: 351 KRVDMSARTVITSDPNIALNEVGVPLIIAKNLTFDEIVTEHNIEYLTQLVKNGKRVYPGA 410 Query: 405 EAVVWDIL-----------------------------DEVIREHPVLLNRAPTLHRLGIQ 435 V+ ++ ++I V+ NR P+LH+L + Sbjct: 411 NFVIKHVIDAEGNESGHIYHLKYVDKPISLKPGDIVKRQLIDGDIVIFNRQPSLHKLSMM 470 Query: 436 AFEPVLIEGK---AIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILS 492 + +I +++ V YNADFDGD+M +HVP +++ E + ++ +S Sbjct: 471 GHKCHVIPDNNLLTFRVNVSVTDPYNADFDGDEMNLHVPQSIQTATEILLIANASRRFVS 530 Query: 493 PANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRI 552 PA I QD ++G Y T + ++A + S L + Sbjct: 531 PATSNIAIKAKQDTLMGSYVQTEPDMEIDW--------RDAMSILMSTSVKLDNDIPKYQ 582 Query: 553 TEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRIL 612 K +++ + + + G + + LGK IS +L + Sbjct: 583 NVSGKFLYSQIIPEGLNITKRKNDKEFQLKIKNG---ELTDGTLGKSEISSILQRIWFQY 639 Query: 613 GLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEK----KHEIISEAEAEVAEIQEQF 668 G K T F D + R G +V I D VI EK +++I E ++ Sbjct: 640 GSKETQEFIDDAQRMILQFLMRYGYTVSIKDTVIGEKVNQYIYDLIETKRKETLAFITEY 699 Query: 669 QSG--LVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMA 726 + ++T K+ + + D + +M N + I++ Sbjct: 700 DNDPYVMTKDAFEIKLQENLKSVQDEIKNTVMRNFDKNS---------------GIFIAI 744 Query: 727 DSGARGSAAQIRQLAGMRGLMAKPDGSI--------------------IETPITANFREG 766 SG+ G Q+AG G + I +F EG Sbjct: 745 SSGSSGEPMNAGQIAGCIGQVIVEGKRIQIRFNGRTLPMFPKFDDSAFSRGFCRNSFIEG 804 Query: 767 LNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVI 826 L ++F R+G+ +TA+KTA++GY+ R+LV + +D+ D + + + Sbjct: 805 LGPFEFFFQVMAGREGIINTAIKTADTGYIQRKLVKMLEDIKQEYDGTVRNANGKLISCV 864 Query: 827 EGG---------DVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSV 877 G D K L +V + V L+ N +++ L + Sbjct: 865 YGDNGINTENQVDQKIDLISANDNKVRNDYVYTEDEIKYLIK-NHKTDKRYTTDLNNSLY 923 Query: 878 DAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQS------IGEP--GTQ 929 + V ++ + I I + + +P + Sbjct: 924 RKLISMRDQLRRIQRLVNLTSAEFKETYKMPVDIQQFIFNIINRDVRNNNVVVDPYYVLK 983 Query: 930 LTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSS-------GKLVITSRNTEL 982 + ++ + + ++K + ++ + + + S+ Sbjct: 984 MIKDMYYGSDSKIMKYNNRTSRIKKEDEKRIKFLMKIYLYDVLAPKKCTHVYKFSKQEFD 1043 Query: 983 KLIDEFGRTKESYKVPYGAVL--------------------------AKGDGEQVAGGET 1016 +++D F +T KV G ++ G V E Sbjct: 1044 EIVDYFKKTIMLAKVEGGEMVGFVAAQSIGEPVTQTNLKSFHKSGTGKTVSGGLVRVKEL 1103 Query: 1017 VANWDPHTMPVITEVSGFVRFTDMID--------GQTITRQTDELTGLSSLVVLDSAERT 1068 + P+ + D I T R E + S + Sbjct: 1104 LGISKNIKTPITEIILEEKYKNDKITASRIASYLKYTTLRDVVEKADVIYDPEPFSKDGL 1163 Query: 1069 AGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLA----RI 1124 + + + K + + + + Sbjct: 1164 MKKDGVDNIFDQEQGKTGCQTDIKNLPWVLRIMLSKEKMIERNINMLEIKTSFCRNWGTR 1223 Query: 1125 PQESGGTKDITGGLPRVADL-----------------FEARRPKEPAIL---------AE 1158 ++ K+ + ++ F+A ++ + Sbjct: 1224 NEDKTSKKEFNKVIDKITQCAIVTNYDNSQVPIVHVRFDANNYNLNTLIQFQEMVINTYK 1283 Query: 1159 ISGIVSFGKETKGKRRLVITPVDGSD--PYEEMIPKWRQLNVFEGERVERGDVISDGPEA 1216 I GI + + + D + ++ + +N+ E ++ D++ Sbjct: 1284 IKGISNITESNNIIEESYVDFDDEGNVVKKKQYVIIAEGINLSEMSQINGIDLLRTKCND 1343 Query: 1217 PHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLE 1276 I + GV A + E G N +HIE++ + Sbjct: 1344 IVTIYEMYGVEAARTAFIKEFTAAIESSGGFSNYQHIEILADAITH-------------- 1389 Query: 1277 GEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLAT--ESFISAASFQETTRVLTE 1334 L+ + + S ASF++T L Sbjct: 1390 --------------------------MGGLIPVNRHGANKLDTDPFSRASFEKTVEQLLA 1423 Query: 1335 AAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQ---DRMRRRAAGEAPAAPQVT 1385 AAV G+ D +R + ++VG LI GTG ++++ V Sbjct: 1424 AAVFGESDHMRSVSARIMVGALINGGTGCFDLLLDHKKIQQSLVESEEVVAPVV 1477 >UniRef50_Q2GP10 DNA-directed RNA polymerase n=1 Tax=Chaetomium globosum RepID=Q2GP10_CHAGB Length = 1475 Score = 620 bits (1599), Expect = e-176, Method: Composition-based stats. Identities = 242/1518 (15%), Positives = 469/1518 (30%), Gaps = 272/1518 (17%) Query: 15 EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74 ++++ + + IRS S ++ T + P GL+ + Sbjct: 9 SSLESVEFTFLTAEEIRSISVKRIENDSTFDN-LLNPIPGGLYDPALG------------ 55 Query: 75 YKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRD 134 +C C + Q GHIEL P H F+ LL Sbjct: 56 ----SWGDALCLTCNLNQAQCP---GHPGHIELPVPVYHPVFMDQAYR----LLRAQCVY 104 Query: 135 IERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDL 194 R + M + + ++ E + F E ++ L S Sbjct: 105 CHRFRLPRHEIHKYTCMFRVVQVGLIHEA-------HMIESFSVSDLGEQLRNLTLSDVP 157 Query: 195 EQECEQLREELNETNS------ETKRKKLTKRIKLLEAFVQSGNKP----------EWMI 238 E ++ EE + ET +++ + +L + + + Sbjct: 158 NPEQDEAEEEGGNLHDGTMRARETYVRQVLRDHRLKVNIGRHQERQARGNSKPLSADMFF 217 Query: 239 LTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNN---RLKRLLDLAAPDIIVRN- 294 ++ L V P RP + + + + N LY+ ++ + ++ R + + ++ Sbjct: 218 VSTLLVPPNRYRPEARMGDSQISEAQQNSLYKLILRSASLVAQISREISGQTKEDMMDES 277 Query: 295 -----------EKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLL 343 LQ+AV++L+D + + KR + + ++ K+G FR+N++ Sbjct: 278 RRTRDMSSLYQAWTELQDAVNSLIDRDKNPVQGAAA-KRNEEGIKQKLEKKEGLFRKNMM 336 Query: 344 GKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI------KAA 397 GKRV+++ RSVI+ P + ++ G+P A +L P + L + Sbjct: 337 GKRVNFAARSVISPDPNIETNEIGVPPVFARKLTYPEPVTSHNFKDLQQAVINGVDKWPG 396 Query: 398 KKMVEREEAVV-------------------------------WDILDEVIREHPVLLNRA 426 +E E + + + VL+NR Sbjct: 397 AAAIENENGQIVNLRAKSLEDRVSLANQLLAPTGNNFSGQRNKKVHRHLTNGDVVLMNRQ 456 Query: 427 PTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMM 485 PTLH+ I ++ G K I++H C YNADFDGD+M +H PLT EA L Sbjct: 457 PTLHKPSIMGHRVRVLPGEKTIRMHYANCNTYNADFDGDEMNMHFPLTEVRGAEALQLSD 516 Query: 486 STNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLY-RSGLASL 544 + + +S G P+ R+ + G+ + L P + +G + Sbjct: 517 TDHQYISGTAGTPL---------------RESGHITGDKIELVPPAIIKPAPRWTGKQVI 561 Query: 545 HARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKG-LPYSIVNQALGKKAISK 603 +K D AK + ++ G I++++ + Sbjct: 562 TTILKNIRPADCGDLWMNGSAKVKSRSWGEDSEEGQVMFRDGEFISGILDKSQLGPSDGG 621 Query: 604 MLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEK----KHEIISEAEA 659 ++ + + G I Y A + G+DD+ + + + E I A Sbjct: 622 FVHAVHEVYGPSVAGKLLSSIGRLLTRYLAMVAFTCGMDDLRMTPQGEKDRKETIKAAVN 681 Query: 660 EVAEIQEQF-----------QSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVIN 708 E+ ++ L+ E ++ S+ T + Sbjct: 682 IGIEVAAKYVSLGEQKPTKDDPLLLERLEEVHRDDKKQEGLELLTSQECAKLSTEITRLC 741 Query: 709 RDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM--------------AKPDGSI 754 EKQ N + M SGA+GS ++ G P Sbjct: 742 LPAGLEKQFPKNHMQSMTTSGAKGSPVNANLISCNLGQQVLEGRRVPVMVSGKTLPSFKP 801 Query: 755 IE------TPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLV 808 + I F G+ +Y+ R+GL DTA+KT+ SGYL R L+ + L Sbjct: 802 YDTDVRAGGYIVNRFLTGIRPQEYYFHHMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLR 861 Query: 809 VTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRV----------TAEDVLKPGTADILV 858 V+ D + + G D + + + L + L Sbjct: 862 VSYDSSVRDSDGTVVQFLFGEDGIDIGKQKYLNDFEFVLRNLDSQLPQIRYHESGTQALF 921 Query: 859 PRNTLLHEQWCDLL----------------------EENSVDAVKVRSVVSCDTDFGVCA 896 + ++ + S G+ Sbjct: 922 EHRDEIMKRMKSAIRSSSTRNPLDPVSSEVDPTAFAFATSEKFYSKMMDYVKTNKDGLIK 981 Query: 897 HCYGRDLARG-----------------HIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGG 939 G D +G ++ GEA+G++A QS+GEP TQ+T+ TFH+ G Sbjct: 982 EKKGSDSQKGQIARKTAEKILAAKYIRSLVEPGEAVGIVAGQSVGEPSTQMTLNTFHLAG 1041 Query: 940 AASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTEL----------------- 982 +++ +++ I ++ + S LV+ +EL Sbjct: 1042 HSAKNVTLGIPRLRE---ILMTASSKISTPSMTLVLNEELSELDGEQFAKSISVLPLAHV 1098 Query: 983 ---KLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTD 1039 ++ E Y + + G+ + + + V+ V Sbjct: 1099 TKEAVVRERVGRGIGYALAKSFEIRLR---FFEAGDYASMYAINIADVLNTVERKFIPLL 1155 Query: 1040 MIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQY 1099 + + ++ + ++ V + + D + +D A+ Sbjct: 1156 SLLTRKEIKKKQKSKSAATPEVGVKSGVVETAPPASERVTTGDDEDDDDEGDDDATSAKQ 1215 Query: 1100 FLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEAR----------- 1148 V + ++ +E T D+ G R+ + EA Sbjct: 1216 RANRSEAVSYGPNDD-EDDEIQNQLQRE---TDDVEEGEERLDFVDEAYGGSPEPEDELG 1271 Query: 1149 --------RPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE 1200 R +E I ++ + F + G + T + + ++ Q V + Sbjct: 1272 DKTDEERSRSREARIKSKNEHVARFRCDEAGGEWVDFTLEFDASIPKILMLSLVQEAVKK 1331 Query: 1201 GERVERGDVISDGPEAPHD-ILRLRGVHAVTRYIVNE---VQDVYRLQGVKINDKHIEVI 1256 +++ I + P G + +V+ + G IN I Sbjct: 1332 -SVIQQIHRIGNAAFEPKKRKDEATGEERIVEMLVHTDGANLRAMQQYGDYINPNRISTN 1390 Query: 1257 VRQMLRKATIVNAGSSDFLE---------GEQVEYSRVKIANRELEANGKVGATYSRDLL 1307 + + V A S+ + G V+ + + + NG A L Sbjct: 1391 DIAQVLEVYGVEACRSNIVAELSGVFAGHGIAVDPRHLNLIADYMTRNGGFSAFNRIGLT 1450 Query: 1308 GITKASLATESFISAASF 1325 G S + S+ Sbjct: 1451 G-------NVSPFTKMSY 1461 >UniRef50_D2A5Z9 DNA-directed RNA polymerase n=1 Tax=Tribolium castaneum RepID=D2A5Z9_TRICA Length = 1619 Score = 620 bits (1599), Expect = e-175, Method: Composition-based stats. Identities = 258/1699 (15%), Positives = 491/1699 (28%), Gaps = 409/1699 (24%) Query: 1 MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60 M ++ K FD++ ++ + + I+ ++ P T++ P GL+ Sbjct: 1 MSRNIRKHDTGPKHLSFDSVVFSMFTKEEIKKLCITKICTPLTLDP-LGHPLSGGLYDKS 59 Query: 61 IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120 + + + C C + G+IEL P + F + + Sbjct: 60 LGP--------------MTEKSEPCGTCRKNLYFCP---GHFGYIELPLPVVNPIFYRMI 102 Query: 121 PSRIGLLL----------DMPLRDIERVLYFESYVVIE---------------------- 148 + + + + ++ +V E Sbjct: 103 GTILRMACLSCFRFQIPEHVKYSITLQIRLLNCGLVTEAVEIANSIALLILVHESLENIP 162 Query: 149 ---------------------GGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQA 187 G L + Q+++ + + M + Sbjct: 163 EDVVLPIRKYETLAQEMQEKLNGEYVLTKNTETLRNQFVNEMLREVKARETCMHCKHSME 222 Query: 188 LLKSMDLEQECEQLR------------------EELNETNSETKRKKLTKRIKLL----- 224 ++ + + + R + + S T + + K K L Sbjct: 223 KVQVLRNKIILSKKRNVAKGSTEVLGKVKAFEAKYVTPDESRTYMRNIWKEEKELMREII 282 Query: 225 --EAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL 282 V+ + + V+PV+PP++RP+ ++ R + + LY+ +I+ L+ + Sbjct: 283 AVLGGVEGEHPTDVFYWDVIPVIPPNMRPVNIVNS-RVSEHPTSQLYKNIIHNTILLRLI 341 Query: 283 LD-----------------------LAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGS 319 + ++P + LQ VD+L+D Sbjct: 342 IQVVKNKGDLGSLPPEAKGAYNVSKGSSPIEKLNLAWESLQSEVDSLIDTTYI------- 394 Query: 320 NKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKP 379 + L +I+ K G R +++GKRV++S R+VIT P L + + G+P+ A L P Sbjct: 395 RNANVAGLKQIIEKKTGIIRMHMMGKRVNFSARTVITPDPNLNIDEIGIPEVFAKHLTYP 454 Query: 380 FIYGKLELRGLATTIKAAKK------MVEREEAVVWD----------------------- 410 + L I MVE E+ + Sbjct: 455 VPVTSWNVEELRKMIMNGPDVHPGAVMVEYEDGTIKRINTNNTTQQESILKRLLTPDKIV 514 Query: 411 -------ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAYNADFD 462 + + +LLNR PTLH+ I A +++G K +LH C AYNADFD Sbjct: 515 GFRGVKRVHRHLCNGDVLLLNRQPTLHKPSIMAHTARVLKGEKTFRLHYANCKAYNADFD 574 Query: 463 GDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAK 521 GD+M H P A+ EA L+ N L P +G P+ QD ++ ++ R + Sbjct: 575 GDEMNAHFPQNELARSEAYNLVNVCNQYLVPKDGTPLSGLIQDHMIAGVKLSLRGRFFNE 634 Query: 522 GEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEK------------------DANGEL 563 + A + + A +K K + Sbjct: 635 VDYKHFVFQALANK-TGKIILLPPAIIKPCQLWSGKQILSTVFINIIPEGHERINLTASA 693 Query: 564 VAKTSLKDTTVGRAIL----------------WMIVPKGLPYSIVNQALGKKAISKMLNT 607 T R +I L ++++ +++ Sbjct: 694 KISAKAWQTAPPRKWKGGGSRFVNPNTMSEAEVVIRGGELLVGVLDKTHYGATPYGLVHC 753 Query: 608 CYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEK----KHEIISEAEAEVAE 663 Y + G + + + G ++G+ D++ EK + +II A + Sbjct: 754 MYELYGGVYATGLLSALAKLFTRFLQKEGFTLGVHDILTVEKADQRRRQIIEGARKIGLD 813 Query: 664 IQ-------EQFQSGLVTAGERYNKV-IDIWAAANDRVSKAMMDNLQTE-TVINRDGQEE 714 + + R N V W A DR K +D+ + Sbjct: 814 VITTALDMPRDSPIEEIVDKIRENSVKNPKWRATVDRQYKTALDSFTNDINKTCLPAGLV 873 Query: 715 KQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM--------------AKPDGSIIE---- 756 + N++ +M SGA+G+ Q++ + G + + P I E Sbjct: 874 LKFPENNLQLMVQSGAKGTTVNTMQISCLLGQIELEGKRPPVMISGKSLPSFPIFEFAPR 933 Query: 757 --TPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDC 814 I F G+ ++F R+GL DTA+KT+ SGYL R L+ + L V D Sbjct: 934 AGGFIDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLTVGYDLT 993 Query: 815 GTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEE 874 + + G D + + + L + I +L ++ ++ Sbjct: 994 VRDSDKCVIQFLYGEDGMDISKLQFLNSKQLVFLADNSKGMIDKKALKMLKDEHQKSVKA 1053 Query: 875 NSVD----------------------AVKVRSVVSCDTDFGVCAHCYGR--------DLA 904 + V + TDFG D Sbjct: 1054 HKQQLADWCEKFGHPLQRERKSPFSLFSSVVRAKTKGTDFGTKEMTKLWKKADKDIKDSF 1113 Query: 905 RGHIINKGEAIGVIAA-------------------QSIGEPGT---QLTMRTFHIGGAAS 942 R I + + I QS + T Q ++ + + Sbjct: 1114 RQQCIPCPDPVNSIYQPDHHFGSLNEKLEELMNTYQSTNKKQTKQFQNMLKLKAMRSLCA 1173 Query: 943 RAAAESSIQVKNKGSIKLSNVKSVVNSSGK-----LVITSRNTELKLIDEFGRTKESYKV 997 + ++ G + + +G+ + R E+ ++ S ++ Sbjct: 1174 PGEPVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMMASKNIKTPSMEI 1233 Query: 998 PYGAVLAKGDGEQ-----------VAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTI 1046 P+ L + E+ V + + D + V Sbjct: 1234 PF---LPVENLEEKAEDLRKMLTRVVVADVLEKVDVTVELNVEPVRQHRYTLRFQFLPRK 1290 Query: 1047 TRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAI 1106 + D G +L R G+ K+ N V++ D + Sbjct: 1291 YYKNDFYVG--PKYILKHMTRKFFGEMFTAIRKLSKVTSNLVMM---DEEKRQKASNDDE 1345 Query: 1107 VQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFG 1166 + D +E T+D G + + + + P+E Sbjct: 1346 EETNDADANEDSS-----DEEPEDTEDAKTG-NKFKQIHDDQEPEESEREDSGDEDTETA 1399 Query: 1167 KETKGKRRLVITPVDGS-DPYEEMIPKWRQLNVFEGERVERGD----------------- 1208 K + Y K + G +E Sbjct: 1400 PPVDDKTNEAVVESYNFAQNYIYDTKKHHWCEITFGLPLEFKKLDLTAILRDVAAKSVLW 1459 Query: 1209 -----------------VISDGPEAPHDILRL--------------------RGVHAVTR 1231 + ++ + G+ A + Sbjct: 1460 ETPNIKRAITYMKNDVLTLRTDGINILEMSKYHALLDLNRLNCNDIHKMAETYGIEAAMK 1519 Query: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRE 1291 IV EVQDV+ + G+K++ +H+ +I M G SR Sbjct: 1520 IIVKEVQDVFNVYGIKVDPRHLSLIADYMT-------------FNGTFEPLSR------- 1559 Query: 1292 LEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 K ++ S + +F+ + L A + GKRD L + Sbjct: 1560 -------------------KGMESSASPLQQMTFESSLTFLRNATIGGKRDNLTNPSSCL 1600 Query: 1352 IVGRLIPAGTGYAYHQDRM 1370 +VG+ GTG +M Sbjct: 1601 MVGKPCVTGTGCFEVLHKM 1619 >UniRef50_B6AIF4 DNA-directed RNA polymerase n=1 Tax=Cryptosporidium muris RN66 RepID=B6AIF4_9CRYT Length = 1803 Score = 619 bits (1596), Expect = e-175, Method: Composition-based stats. Identities = 178/960 (18%), Positives = 331/960 (34%), Gaps = 112/960 (11%) Query: 5 LKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGP 64 + + ++ + +A++ ++ S D I + EV E T P G+ ++ Sbjct: 26 KQIVSPESLRRQIEAVEFSVMSSDQIACSAHMEVIHREIYKPLTTTPMSGGVLDLKLGAH 85 Query: 65 VKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRI 124 D + C CG + G+I+L P H+ + K + Sbjct: 86 RADAQ---------------CSSCGGNLRTC---GGHWGYIQLQQPVFHVGYFK----HL 123 Query: 125 GLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEA 184 +L + L + + L + + A Sbjct: 124 YGVLCCLCKSCGAFLLRGNEKKFYLNRLKQSYSLAHAYKLQFRKLIDRCKKVKICSNCNA 183 Query: 185 IQALLKS---------MDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPE 235 Q L+ M L + + E + + L +++ + + KP+ Sbjct: 184 QQGQLRRLIRPTLDQFMKLTHVVKSESHDYIEDLTPLFVQTLLQKVPYEDLDILEMFKPD 243 Query: 236 WMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNE 295 ++L+ LPV P +RP V + DL + + + NN +K + + + Sbjct: 244 RLLLSRLPVPPNCIRPSVTMGEAGSNEDDLTVILSEITDLNNMIKSQMKSGFQTLQLLGN 303 Query: 296 KRMLQEAVDALLDNGRRGRAITGSNK---RPLKSLADMIKGKQGRFRQNLLGKRVDYSGR 352 LQ L++ G ++K + + + +KGK+GRFR NL GKRVD+SGR Sbjct: 304 WEFLQLQCTRLINAEAPGVNQLLASKNIPKAGRGICQRLKGKEGRFRGNLSGKRVDFSGR 363 Query: 353 SVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAA--------------- 397 +VI+ P + + + +P +A + P + L + Sbjct: 364 TVISPDPNVAVDEVVVPVVIARIMTYPERVNSHNIERLRDAVLNGHNIWPGACYVYKTNG 423 Query: 398 --------KKMVEREEAVVWDI-LDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQ 448 + + E + D+ +I VL NR P+LHRL I + V++ + + Sbjct: 424 SKSSLRYANRRIVSERLEIGDVVERHMITGDSVLFNRQPSLHRLSIMSHRVVVMPWRTFR 483 Query: 449 LHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVL 508 + CA YNADFDGD+M +H+P A+ EA+ LM +N+++P NGEP++ +QD +L Sbjct: 484 FNECACAPYNADFDGDEMNLHMPQNELARAEAKYLMGLVHNLVTPRNGEPLVAATQDFLL 543 Query: 509 GLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTS 568 G+Y +T V + + + +K K L+ Sbjct: 544 GIYLLTSRDVFLTRDQFSQYCCYFTDGCI-PVELPPPSILKPIELWTGKQVFNVLIRPNP 602 Query: 569 LK---------------------DTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNT 607 + ++ L V + + + + Sbjct: 603 SERQHIIVNFELKERDYDTKLDLKDLCPNEGFVIVRHSELLAGAVGKKVLGGSKEGLFFH 662 Query: 608 CYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPE----KKHEIISEAEAEVAE 663 R + + ++ Y A+ G ++GIDD+ E K +++ + ++ E Sbjct: 663 ILRENSNEKSAEVMGRVARFVSRYLAQKGMTIGIDDVTPNEGLLSAKSKLLEDGYRKIQE 722 Query: 664 IQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIY 723 F+ G + D + + L N Sbjct: 723 EITTFELGKMIPHPGC--------TLEDTLEVKVKKILDEIRNDAGKASYSSLPFSNKPL 774 Query: 724 MMADSGARGSAAQIRQLAGMRGLMAKPDGSI--------------------IETPITANF 763 +M SGA+G I Q+ G I + +F Sbjct: 775 LMYLSGAKGQLINIAQMVACVGQQNVAGQRIQNGFTQRTLPHFKINCVDGRSRGFVANSF 834 Query: 764 REGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMT 823 GL ++F T R+GL DTA+KTA +GY+ RRL+ +DL V D + Sbjct: 835 FSGLQPDEFFFHTMSGREGLVDTAVKTAETGYMQRRLIKALEDLCVKYDQTVRSSDGQII 894 Query: 824 PVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVR 883 I G D P+ ++ + L + + +++ L+ + + Sbjct: 895 EFIYGDDGLNPMSMEDKLKLVNFERLFKHVLSYVRVHSNMIYLYKSFELKGLTKYKNCIN 954 Score = 200 bits (507), Expect = 5e-49, Method: Composition-based stats. Identities = 88/535 (16%), Positives = 168/535 (31%), Gaps = 98/535 (18%) Query: 836 RDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVD----AVKVRSVVSCDTD 891 +D +L +D+ + ++ ++ H + ++ + ++ Sbjct: 1332 QDSLLYNQQKQDLSHCVVNNSILLNSSESHPIYKSDKNCHTTKLKSCRSNIEYTITVRHL 1391 Query: 892 FGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQ 951 + + C+ + I+ G+A+G IAAQSIGEPGTQ+T++TFH G AS + Sbjct: 1392 YEFISLCWLK--YMKAIVQPGDAVGAIAAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPR 1449 Query: 952 VKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQV 1011 +K ++N++ K++ LK Sbjct: 1450 -----------IKEIINAATKILTPIIQAPLK---------------------------- 1470 Query: 1012 AGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGG 1071 +P V G + + + T + G+ + L Sbjct: 1471 ---------NPWDYKCAQMVKGKIVKYLLREVCTHIEEVYSPQGVCLNIYLCEKTIQNLY 1521 Query: 1072 KDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGT 1131 D+ + + + + + + I G + + Sbjct: 1522 LDINAYTVRDSIYSHGQICKLRLKEGDIQIINQWTLAVYPPDTIEKGSRSGSTSSNNNLS 1581 Query: 1132 KDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIP 1191 G + LF+ + K +SGI + + +V + Sbjct: 1582 LTSGSGPSSLNVLFQLKILKRGLQNVIVSGISGIRRSVIRQDEVVDPNTGKKRHKYSLAV 1641 Query: 1192 KWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDK 1251 + L+ G G IS + + G+ A I EV + I+ + Sbjct: 1642 EGYGLSALMGISGLIG--ISTVSNHIIETKEVLGIEAARSVIAQEVLKCMDAYSMDIDLR 1699 Query: 1252 HIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITK 1311 HI+++ M + D+LGI++ Sbjct: 1700 HIQLLADVMT----------------------------------------FRGDVLGISR 1719 Query: 1312 ASLAT--ESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 + S + ASF+ET L EAA + D + G+ E VI+G+ I GTG Sbjct: 1720 FGIQKMRTSTLMLASFEETNEHLFEAAFQNRIDPVDGVSECVIMGKPIKIGTGAF 1774 >UniRef50_B0CXW7 DNA-directed RNA polymerase n=1 Tax=Laccaria bicolor S238N-H82 RepID=B0CXW7_LACBS Length = 1711 Score = 618 bits (1593), Expect = e-175, Method: Composition-based stats. Identities = 225/1388 (16%), Positives = 429/1388 (30%), Gaps = 299/1388 (21%) Query: 229 QSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL-LDLAA 287 S + L V+PV P RP L F N+L +V+N + R++ L LDL A Sbjct: 364 LSFASADMFFLEVIPVAPTRFRPPAKLGEVLF-EHPQNELLSKVLNTSYRMRDLSLDLRA 422 Query: 288 PDIIVRNEKR---------------MLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIK 332 N LQ V++ +D+ + + +K P + ++ Sbjct: 423 ASQKTGNVDEGARKTLMSALLDRLVQLQVDVNSFMDSSKNPAPVRQ-SKLPPAGVKQGLE 481 Query: 333 GKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLAT 392 K+G FR++++GKRV+Y+ RSVI+ + ++ G+P A +L P L Sbjct: 482 KKEGLFRKHMMGKRVNYAARSVISPDVNIEPNEIGIPPVFARKLTFPEPVTPANFHELRQ 541 Query: 393 TI------KAAKKMVEREEA---------------------------------------- 406 + +VE E+ Sbjct: 542 RVITGPHGYPGATLVEYEDGHQQSLDKLTVEQRTAIANQLLTPQEGDRGSGRRGLYTRTT 601 Query: 407 -VVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAYNADFDGD 464 + + + ++LNR PTLH+ + A + ++ G K I++H C +YN +F Sbjct: 602 AMNKKVYRHLRDGDILILNRQPTLHKPSMMAHKARVLTGEKTIRMHYANCNSYNGEFMAI 661 Query: 465 -QMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVL-GLYYMTRDCVNAKG 522 QM +H P A+ EA + + N L P +G P+ QD V+ G++ +D + Sbjct: 662 LQMNIHFPQNHVARAEAMMIANTDNQYLVPTSGNPLRGLIQDHVVAGVWMTCQDAFFTRE 721 Query: 523 EGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTV-------- 574 E L G + I + + G+ + T LK+ T Sbjct: 722 EYCQLLYGALRPEEESRGA--RLVTLPPTIWKPKPMWTGKQIISTVLKNITPKPFEGLSL 779 Query: 575 --------------GRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIF 620 + + + L ++++A ++++ Y + G Sbjct: 780 NAKTKVPGYLWGADSKEDQVVFMDGELLCGVLDKAAFGATDYGLVHSVYELYGADVAGRL 839 Query: 621 ADQIMYTGFAYAARSGASVGIDDMVIPE----KKHEIISEAEAEVAE-IQEQFQSGLVTA 675 + + + +DD+++ K++++I E E E F S T Sbjct: 840 LGVLSRLFTKFLQHRAFTCRMDDLILTPEGDGKRNDLIKRGENLGTEGAIENFPSLSSTP 899 Query: 676 G-----------ERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 724 E + + A + V + + + I ++ FN + Sbjct: 900 KLEIAAELTTLLEDVLRDDNKMAGLDVTVKTKLSKLTSSISDICLPNGLLRKFPFNHMQT 959 Query: 725 MADSGARGSAAQIRQLAGMRGLM--------------AKPDGSIIE------TPITANFR 764 M SGA+GSA RQ++ G P E + + F Sbjct: 960 MTLSGAKGSAVNARQISCALGQQELEGRRVPVMVSGKTLPSFKAFETKAIAGGYVVSRFL 1019 Query: 765 EGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTP 824 G+ +++ R+GL DTA+KT+ SGYL R L+ + + V D + Sbjct: 1020 TGIKPQEFYFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGIRVHYDHTVRGSDNSIYQ 1079 Query: 825 VIEGGDVKEPLRDRVLGRV---------------------TAEDVLKPGTADILVPRNTL 863 GGD + R + L + ++ ++ R+ Sbjct: 1080 FAYGGDGLDVTRQKHLYQFGFIVQNQISLARHIRPADIQNVVDESTAISYMKKVLKRSPD 1139 Query: 864 LHEQWCDLLEENSVDAVKVRSVV----SCDTDFGVCAHCYGRDLARGHIIN--------- 910 ++ + A+ + S S F + Y + + Sbjct: 1140 RPDKNKPAKRDKYDPALSLYSPSRYLGSTSEQFAIAVDNYVKTNPHNLLAEKEDEVRFKS 1199 Query: 911 ------------------------KGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAA 946 GEA+G++A+Q +GEP TQ+T+ TFH G + Sbjct: 1200 RTPPLHPRNFRLLMNVKYMKSLVDPGEAVGLLASQGVGEPSTQMTLNTFHFAGHGAANVT 1259 Query: 947 ESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKL-----------IDEFGRTKESY 995 +++ K+ + + I E KE Sbjct: 1260 LGIPRLREIVMTASQKPKTPSMTMKVRPDITAEDITLFCKRASRVTLAQIVENVEVKEQL 1319 Query: 996 KVPYGAV-----LAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQT 1050 +V + +V A +D ++ + T + Q ++ Sbjct: 1320 RVEGETRRTQFTIEIKFFPKVEYQ---AEYDVEPSEILAVFATKFPLTLKREMQNEMKKL 1376 Query: 1051 DELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLE 1110 D + + + D +A + + + Sbjct: 1377 DADLKSQIAELGKGKKAKSREGDDGNDGDDDEAPTKRKDDDEESEAGDGGADDEKRARQK 1436 Query: 1111 DGVQISSGDTLARIPQESGGTKDI--------------------------TGGLPRVADL 1144 D E+ +DI + R++DL Sbjct: 1437 KQQATYESDDSDVEDAEAFNDEDIEAAYAPETEAMELDAKPAKKDRAQSLKALISRMSDL 1496 Query: 1145 FEARRPKEPAI---LAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEG 1201 F+ P + + + F + + I IP + + Sbjct: 1497 FQGHLPHATSFEFDESRCVFQLEFRLDMPKLLFVGIVERTCRATIVREIPGITECFQAKD 1556 Query: 1202 ERVERGDVISDG------------------------PEAPHDILRLRGVHAVTRYIVNEV 1237 E+ + ++G + IL+ GV I+ E+ Sbjct: 1557 EKKGDITLTTNGSNFRGMWEFAVSSDESILEDDEIYSNDIYAILKTYGVEMARAAILREM 1616 Query: 1238 QDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGK 1297 ++ ++++ +H+E+I M + G F Sbjct: 1617 GGIFGAYNIQVDRRHLELIADYMTF-----DGGYKPF----------------------- 1648 Query: 1298 VGATYSRDLLGITKASLATE-SFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRL 1356 + ++T S + AS++ T L++A + G D+L N+++GR Sbjct: 1649 ------------NRKGISTNPSPLLKASYETTGAFLSDATLYGDFDDLSTPSGNIVLGRP 1696 Query: 1357 IPAGTGYA 1364 GTG Sbjct: 1697 NCTGTGVF 1704 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 43/148 (29%), Gaps = 23/148 (15%) Query: 14 TEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCG 73 + + + IR S ++ P ++ +P GL+ + Sbjct: 8 PSTVAGVSFSFLTSQDIRRISVKQIVNPVLLD-DLNRPNIGGLYDPSLGPS--------- 57 Query: 74 KYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLR 133 R IC C + GHIEL +P H F+ + + LL Sbjct: 58 ------DRSDICATCHLTYFTCP---GHFGHIELPAPVFHPLFMTN----MYNLLRGTCM 104 Query: 134 DIERVLYFESYVVIEGGMTNLERQQILT 161 R + + L + +L Sbjct: 105 FCHRFKMTRTVLWKFMAKLRLLERGLLD 132 >UniRef50_Q0D0E1 DNA-directed RNA polymerase n=23 Tax=Leotiomyceta RepID=Q0D0E1_ASPTN Length = 1691 Score = 614 bits (1584), Expect = e-174, Method: Composition-based stats. Identities = 220/1345 (16%), Positives = 436/1345 (32%), Gaps = 234/1345 (17%) Query: 229 QSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRN---NRLKRLLDL 285 +S + + + V P RP G + N +++ N++ + Sbjct: 371 ESRVSADMFFIKSILVPPNKYRPAAIQGAGEIMEAQQNTPLTQILKNCDIINQISKERQN 430 Query: 286 AAPDII--VRNEKRML------QEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGR 337 D I VR+ + +L Q+ V+ L+D R G + + +++ K+G Sbjct: 431 GGSDSITRVRDYRDLLHAIVQLQDTVNGLIDRDRSGLSGAAVAGAANG-IKQILEKKEGL 489 Query: 338 FRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAA 397 FR+N++GKRV+++ RSVI+ P + ++ G+P A +L P + + Sbjct: 490 FRKNMMGKRVNFAARSVISPDPNIETNEIGVPLVFAKKLTYPEPVTNHNFWEMKQAVING 549 Query: 398 KKM------VEREEAVV-------------------------------WDILDEVIREHP 420 +E E V + + Sbjct: 550 PDKYPGAAAIENELGQVTNLKFKSLDERTALANQLLAPSNWRMKGSRNKKVYRHLTTGDV 609 Query: 421 VLLNRAPTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLE 479 VL+NR PTLH+ I + ++ + I++H C YNADFDGD+M +H P A+ E Sbjct: 610 VLMNRQPTLHKPSIMGHKARVLSNERVIRMHYANCNTYNADFDGDEMNMHFPQNELARAE 669 Query: 480 ARALMMSTNNILSPANGEPIIVPSQDVV-LGLYYMTRDCVNAKGEGMVLTGPK-EAERLY 537 A L + + L +G+P+ QD + +G ++ RD + + L E + Sbjct: 670 AMMLADADHQYLVATSGKPLRGLIQDHISMGTWFTCRDSFFDEEDYHELLYSCLRPENAH 729 Query: 538 RSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTV---------------------GR 576 ++ V + + ++ G+ + T LK+ G Sbjct: 730 T--ISDRIQLVGPTVIKPKRLWTGKQIITTILKNIMPSERAGLNLKSKSSTPGDRWGKGN 787 Query: 577 AILWMIVPKG-LPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARS 635 +I G + I+++ ++++ + I G + + Sbjct: 788 EEGDVIFKDGEMLCGILDKKQIGPTAGGLIDSIHEIYGHTIAGKLIGILGRLLTRFLNMR 847 Query: 636 GASVGIDDMVIPEK----KHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVI--DIWAAA 689 + GIDD+ + ++ + E +S+A E+ ++ + T + + + Sbjct: 848 AFTCGIDDLRLTKEGDRVRKEKLSQAPKIGREVALKYVTLDQTTVPDLDAELRRRMEEVL 907 Query: 690 NDRVSKAMMDNLQT---------ETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQL 740 D ++ +D++ T G K +N + M SGA+GS+ + Sbjct: 908 RDDEKQSGLDSVTNSQTAKLSTEITKACLPGGLVKPFPWNQMQSMTISGAKGSSVNANLI 967 Query: 741 AGMRGLM--------------AKPDGSIIE------TPITANFREGLNVLQYFISTHGAR 780 + G P + ++ F G+ +Y+ R Sbjct: 968 SCNLGQQVLEGRRVPVMISGKTLPSFRAFDTNPMAGGYVSGRFLTGIKPQEYYFHAMAGR 1027 Query: 781 KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTH-EGIMMTPVIEGGDVKEPLRDRV 839 +GL DTA+KT+ SGYL R L+ + L D + + G D + + Sbjct: 1028 EGLIDTAVKTSRSGYLQRCLIKGMEGLRAEYDTSVREASDGSIIQFLYGEDGLDITKQVQ 1087 Query: 840 LGR--------------VTAEDVLKPGTADILVPRNTL---------------------- 863 L R V + + + Sbjct: 1088 LKRFDFLASNHKSIMSQVNLRSDYHNLEKEEVANWHKDAMKKVRKSGKVDAMDPVLAHYH 1147 Query: 864 -------LHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLAR----GHIINKG 912 + E + L++ + G + L +++ G Sbjct: 1148 PGGNLGSVSEAFSQALKKYEDENKDGYLKDKKKGVDGFLSKKAFDTLMNMKYLKSVVDPG 1207 Query: 913 EAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGK 972 EA+G++A+QSIGEP TQ+T+ TFH+ G +++ +++ I ++ +++ + Sbjct: 1208 EAVGIVASQSIGEPSTQMTLNTFHLAGHSAKNVTLGIPRLRE---IVMTASANIMTPTMT 1264 Query: 973 LVITSRNTELKLIDEFGRTKESYKVPYGAVL-AKGDGEQVAGG---ETVANWDPHTMPVI 1028 LV+ N EL K K+ V+ E+++ G + + + P Sbjct: 1265 LVL---NEELSKEHSERFAKAISKLSIAEVVDKVQIRERISSGSTKAKIYDIEVTFFPAD 1321 Query: 1029 TEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDV 1088 + + + + +L L+ + + A +I + G Sbjct: 1322 EYCAEYAIKVKDVQNTLQNKFIPKLVKLTRAELKKRQDEKALKSYSTAQPEIGVSVGTVQ 1381 Query: 1089 LIP----------------------------GTDMPAQYFLPGKAIVQLEDGVQISSGDT 1120 P Y P + +++ D Sbjct: 1382 EAPRAPEGANDPADDDDEEDEDDAKRARGAQNRSNQVSYEGPEEEEMEMVQQQDAPEDDD 1441 Query: 1121 LARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPV 1180 P++ + + + + +E I + + F + K + Sbjct: 1442 EDEAPKQQRDVEMEDASDDDSDEETKDTKLREEDIRNKFHEVTQFKFDPKKGNSCTVQLQ 1501 Query: 1181 DGSDPYEEMI----------------PKWRQLNVFEGE--RVERGDVISDGPEAPHDILR 1222 + ++ P E + + E VI++G + Sbjct: 1502 YDIATPKLLVLPLVETAARAAVIQSIPGLGNCTYVEADEAKGEPAHVITEG-VNLLAMRD 1560 Query: 1223 LRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEY 1282 + + N + + + GV+ IVR+M V G S V+ Sbjct: 1561 YQDIIKPHSLYTNSIHHMLQFYGVEAAR---ASIVREMSD----VFEGHS-----ISVDN 1608 Query: 1283 SRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRD 1342 + + + +G A L+ S + SF+ T L EA + D Sbjct: 1609 RHLNLIGDVMTQSGGFRAFNRNGLV------KDGTSPFAKMSFETTVGFLKEAVIERDFD 1662 Query: 1343 ELRGLKENVIVGRLIPAGTGYAYHQ 1367 LR ++VGR GTG Sbjct: 1663 NLRSPSSRIVVGRPGIVGTGAFDVL 1687 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 26/189 (13%), Positives = 61/189 (32%), Gaps = 18/189 (9%) Query: 1 MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60 M + + + + + + + + +++ S + T++ P GL+ Sbjct: 1 MANFARPVASS-----IAGVDFGVYTDEDVKAISVKRIHNTPTLDS-FNNPVPGGLYDPA 54 Query: 61 IF--GPVKDYECLCGKYKRLKHR---GVICEKCGVEVTQTKVRRERMGHIELASPTAHIW 115 + G + G+ +++ R + C C + GHIEL ++ Sbjct: 55 LGAWGDHVALYAIVGEGFQVRTRLLTSLSCTTCRLNAWSCT---GHSGHIELPVHVYNLT 111 Query: 116 FLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDE 175 + LL R + + L + ++ E LD + D Sbjct: 112 HFDQ----MYRLLRAQCVYCHRFQMSRTQINAYECKLRLLQYGLVDELVELDQIGSGKDT 167 Query: 176 FDAKMGAEA 184 ++ GA+ Sbjct: 168 KKSRKGADG 176 >UniRef50_Q8TXI8 DNA-directed RNA polymerase n=1 Tax=Methanopyrus kandleri RepID=Q8TXI8_METKA Length = 953 Score = 610 bits (1572), Expect = e-172, Method: Composition-based stats. Identities = 219/956 (22%), Positives = 353/956 (36%), Gaps = 147/956 (15%) Query: 3 DLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIF 62 L++ + Q + I + PD IR S EV PET + + P G+ R+ Sbjct: 2 TLMEEPRVQDPPKYVKRILFGILPPDKIRKMSKVEVTSPETYDEDGY-PIEGGVMDTRMG 60 Query: 63 GPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPS 122 + G+ C CG + GHIELA P H + + Sbjct: 61 ---------------VIDPGLRCRTCGQPAGRCP---GHFGHIELARPVLHPRYAE---- 98 Query: 123 RIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGA 182 RI +L + RV E + E D + + Sbjct: 99 RIKDVLRATCPECGRVKLPEDEIESYLREVRE------GIRPVKSVAAEVIDRAEKRESC 152 Query: 183 EAIQALLKSMDLEQECEQLREE--LNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT 240 A + + ++ + ++ L + +K+ + F +PEW +LT Sbjct: 153 PHCGAESRKITYQKPTTIMMDDERLWPVDIRAWLEKIPDEDVEILGFHPERARPEWAVLT 212 Query: 241 VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ 300 VLPV P +RP + L+ G A DL ++ N RLK L+ AP+ I+ ++ +LQ Sbjct: 213 VLPVPPVTMRPSIILETGERAEDDLTHKLVDIVRVNLRLKESLEAGAPEPIIEDQWDLLQ 272 Query: 301 EAVDALLDNGRRGRAI--TGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVG 358 V +DN G + + +PLK + +KGK+GRFRQNL GKRV++S RSVIT Sbjct: 273 YHVTTYIDNEIGGVPVARHRTGGKPLKGIVQRLKGKEGRFRQNLAGKRVNFSARSVITPD 332 Query: 359 PYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWD-------- 410 P L G+P+ +A EL P + + L + VV Sbjct: 333 PELDPFTLGVPEAIAKELTVPERVTEWNIDRLRKLVLNGPNKHPGANYVVKRDGSRIRIT 392 Query: 411 ----------------ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVC 454 + ++ PV+ NR PTLH F ++ GK +L P C Sbjct: 393 DENKEKLAEDLEPGDVVERHLMDGDPVMFNRQPTLHIQSELGFRVRVMPGKTFRL-PAAC 451 Query: 455 ---AAYNADFDGDQMAVHVPLTLEAQLEARALMMST-NNILSPANGEPII--VPSQDVVL 508 +NADFDGD+M +HVP + EA+ E R LM ++ P NG + P + ++ Sbjct: 452 YMGVGFNADFDGDEMNLHVPQSEEARAEVRELMGCYVYHLWPPKNGHEDVRNSPIHEAIV 511 Query: 509 GLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL--------------HARVKVR--I 552 G++ ++R + + +L K+ + L H V Sbjct: 512 GIHLLSRAWIPLREAYQLLEEVKKEGDWFEPTEVKLKPEAKYRRGFEEEIHELEFVCGQP 571 Query: 553 TEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYS--------IVNQALGKKAISKM 604 E E G + L D + + P + IV L +K + + Sbjct: 572 REGEPLVTGRQLLSVFLPDWLDRVELENAVCPDDEEHGKVVIEKGRIVRGFLDEKTVHGI 631 Query: 605 LNTCYRIL---------------GLKPTVIFADQIMYTGFAYAARSGASVGID---DMV- 645 + + T+ D+I G + R G ++GID D+ Sbjct: 632 MTEIVHRYAAREVARGESYPWFKAAETTLRAMDKIGRLGLRFVTRYGFTLGIDEFEDIYE 691 Query: 646 -IPEKKHEIISEAEAEVAEIQEQFQS--GLVTAGERYNKV-IDIWAAANDRVSKAMMDNL 701 ++ + EA + EI E+ + + E N+ I+ + +M L Sbjct: 692 RFRDEVERLCDEAAKKAKEIIERGERRLQELEEHETCNRSRIERGEMLERNIESEVMAIL 751 Query: 702 QTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIE----- 756 V ++ + FN Y+M +SGARGS I ++A + G A Sbjct: 752 NQPRVETERLLKKHRDLFNPAYIMPESGARGSITNIARMALIGGQQAVMGERPHRAKHNT 811 Query: 757 -------------------------------TPITANFREGLNVLQYFISTHGARKGLAD 785 + + F EGL++++YF+ R+GL D Sbjct: 812 EHIMEKIVNYSYTDRVTPHFEKSLIPGVKEGGFVRSGFFEGLDMVEYFLHAMSGREGLID 871 Query: 786 TALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLG 841 +TA+SGYL RR V A DL+V + + G D +P + L Sbjct: 872 KGFRTADSGYLHRRYVTTALDLIVDSGGRVRDSANNVIQLTYGEDGVDPAKKWGLN 927 >UniRef50_Q0U0A2 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria nodorum RepID=Q0U0A2_PHANO Length = 1691 Score = 609 bits (1570), Expect = e-172, Method: Composition-based stats. Identities = 244/1408 (17%), Positives = 435/1408 (30%), Gaps = 243/1408 (17%) Query: 196 QECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKP--------EWMILTVLPVLPP 247 + +E + L ++ + + S + + V P Sbjct: 319 DPADGAQEYMTAAEVRAAMILLFEQEADMMRLLYSPYASKSLVSVTADMFFTEAVVVPPN 378 Query: 248 DLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDII-----------VRNEK 296 R L G A S N LY+ ++N + ++++ + ++ + Sbjct: 379 RYR-LEDKTGDSIAESPKNSLYKGILNACDAMRQISNEMKGQENEAGYRRRNFDDLQTQW 437 Query: 297 RMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIT 356 LQ AV+AL+D + + +++ K+G FR+N++GKRV+++ RSVI+ Sbjct: 438 VNLQGAVNALIDKEANPTQGRAAITNA-DGIKQVLEKKEGLFRKNMMGKRVNFAARSVIS 496 Query: 357 VGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKM------VEREEAVV-- 408 P + ++ G+P A++L P L + +E E V Sbjct: 497 PDPNIETNEIGVPPVFAIKLTYPEPVTNHNFYDLKEAVLNGPDKWPGAVAIENESGQVIA 556 Query: 409 -----------------------------WDILDEVIREHPVLLNRAPTLHRLGIQAFEP 439 + + V++NR PTLH+ + A Sbjct: 557 LRKKNYEERLALANQLLAPSNSYGNGSKNKKVHRHLNNGDVVIMNRQPTLHKPSMMAHRA 616 Query: 440 VLIEG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEP 498 ++ G K I++H C YNADFDGD+M +H P A+ EA + + + LS G+P Sbjct: 617 RVLPGEKTIRMHYANCNTYNADFDGDEMNMHFPQNELARAEAMTVADTDHQYLSATAGKP 676 Query: 499 IIVPSQDVV-LGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEK 557 + QD + +G++ +D + E L + L V I + Sbjct: 677 LRGLIQDHISMGVWITNKDTFFTREEYHQLLYSCLRPEDGHTTSGRL-ETVDPAIWKPVP 735 Query: 558 DANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPT 617 G+ + T LK+ K Y + L A +N Y G Sbjct: 736 LWTGKQIFTTVLKNV------------KPAEYQDLTMTLLGPAGGGFINGVYEAYGETIA 783 Query: 618 VIFADQIMYTGFAYAARSGASVGIDDMVIPEK----KHEIISEAEAEVAEIQEQFQSGLV 673 I S G++D+++ E+ + E +S+A+ ++ ++ + Sbjct: 784 GRVLSIIGRLLTKLLHMRAFSCGVEDLILTEEGDRARIEELSKAQTSGFKVATEYVTLDA 843 Query: 674 TAGERYNKVI--DIWAAANDRVSKAMMDNLQTETV---------INRDGQEEKQVSFNSI 722 + + N + + D + +D L T GQ K N + Sbjct: 844 SKIDPMNPELRRRMEDVLRDDEKQRGLDMLTTTANSQISAAVTTACLPGQLIKPFPKNQM 903 Query: 723 YMMADSGARGSAAQIRQLAGMRGLM--------------AKPDGSIIE------TPITAN 762 M SGA+GS Q++ G P E I Sbjct: 904 QAMTGSGAKGSLVNANQISCNLGQQVLEGRRVPVMVSGKTLPCFKPFETSVRAGGYIVNR 963 Query: 763 FREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMM 822 F G+ +Y+ R+GL DTA+KT+ SGYL R ++ + L V D M Sbjct: 964 FLTGIRPQEYYFHMMAGREGLIDTAVKTSRSGYLQRCIIKGMEGLHVEYDTSVRDSDGSM 1023 Query: 823 TPVIEGGDVKEPLRDRVL-----------------------GRVTAEDVLKPGTADILVP 859 + G D + + + L GRV + + + Sbjct: 1024 VQFLYGEDGLDITKQKYLNDFKFQAENFLSLAQTLQTQAAFGRVWSPEATEHNKKASKKA 1083 Query: 860 RNTLL-------------------HEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYG 900 R + E++ E + G Sbjct: 1084 RKGDITSMDPALALYEPSRHSGSTSEKFYQAKREYTEKNPDKLLKHKKKDPEGEILKKSF 1143 Query: 901 RDL----ARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNK- 955 + ++ GEA+GV+A QSIGEP TQ+T+ TFH+ G A++ +++ Sbjct: 1144 EQMLDLKYLRSLVEPGEAVGVVAGQSIGEPSTQMTLNTFHLAGHAAKNVTLGIPRLREIV 1203 Query: 956 ----------GSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESY---KVPYGAV 1002 G + + + K + L + + ES A Sbjct: 1204 MTASAKISTPGMQLYPHKELSEEDNKKFAKSITRLPLADVLDKVTVTESTGQGTQYSQAR 1263 Query: 1003 LAKGDGEQVAGGETVANWDPHTMPVITEVSGFV--RFTDMIDGQTITRQTD--------- 1051 + K + E + V + R I + + Sbjct: 1264 IYKVRLDFYPAKEYTQEYAIKVRDVAESIEQKFCPRLQKAIRADLKKKGENTSLSTAKAS 1323 Query: 1052 ---ELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQ 1108 G S+ + + + +D D+ + Sbjct: 1324 GAVPNVGQSNRNIEQQTAQEVDDATAADKEGGPEDDDSDDGEGEGDVTHTKQRGRREDSV 1383 Query: 1109 LEDGVQISSGDTLARIPQESGGTKDIT-GGLPR---------------VADLF----EAR 1148 + + + + + D T GG P+ L EA Sbjct: 1384 GYEDPEEEEQAMNDALDRVEAPSDDETYGGSPKPSRNSTPELDSDDDDDERLLVPTDEAS 1443 Query: 1149 RPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEM----------------IPK 1192 ++ I + + + F + K IT S + + IP Sbjct: 1444 DVRKDRITGKNTDVSDFVFDDKKGAFCEITFEFSSSAAKLLMLNHVEAAASFATIHVIPG 1503 Query: 1193 WRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKH 1252 + E +I+ G + + V R N++ + +L GV+ Sbjct: 1504 ITSAMYSAAAKGEEAAIITAGS-NLLAMREYSHIIDVNRIFTNDIVGMLQLYGVEACR-- 1560 Query: 1253 IEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKA 1312 IVR+M V +G G V+ + + + G L Sbjct: 1561 -ATIVREM----HAVFSGH-----GISVDLRHLNLIADTMTKGGGFTPFNRIGLK----- 1605 Query: 1313 SLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRM-- 1370 S S SF+ T L +A + D+L ++VGRL GTG + Sbjct: 1606 --TNVSPFSKMSFETTVGFLKDAVLERDWDDLSNPSARIVVGRLGKLGTGAFDVLAPVNV 1663 Query: 1371 ---RRRAAGEAPAAPQVTAEDASASLAE 1395 + A E +D AE Sbjct: 1664 IDPLKTEADEINDVINGVEDDVEMEDAE 1691 Score = 97.6 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 33/212 (15%), Positives = 63/212 (29%), Gaps = 23/212 (10%) Query: 9 KAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDY 68 Q + +++ S +R+ S + P T + P GL A + + + Sbjct: 3 THQPTSSAIQSVEFGFLSTQDVRTLSVKRITNPTTFDS-LLHPVAGGLHDAALGAFLDNP 61 Query: 69 ECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLL 128 C CG +T GHIEL P ++ FL + LL Sbjct: 62 ----------------CSTCG--LTTFMGCPGHCGHIELPVPVYNLTFLDQ----LLRLL 99 Query: 129 DMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQAL 188 ++ V L R ++ E L + E+ Sbjct: 100 RGKCVYCHQLKLARVTVNEFVSRLRLIRCGLVQEANELHEHVNASKGKTKRTAQESDSED 159 Query: 189 LKSMDLEQECEQLREELNETNSETKRKKLTKR 220 + Q+ +++ L + ++ + K Sbjct: 160 ENDDIVSQQNNYVKKCLKKAGITSRDVRSIKE 191 >UniRef50_Q74M69 DNA-directed RNA polymerase n=1 Tax=Nanoarchaeum equitans RepID=Q74M69_NANEQ Length = 870 Score = 606 bits (1563), Expect = e-171, Method: Composition-based stats. Identities = 197/887 (22%), Positives = 341/887 (38%), Gaps = 90/887 (10%) Query: 12 TKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECL 71 + ++ I + P++IR S EVK PE + R P +G R+ Sbjct: 1 MEIKKLGLIDLRPLDPEVIRKLSVVEVKIPEPYD-RDGLPIENGPMDPRMG--------- 50 Query: 72 CGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMP 131 + G+ C+ CG + + G IELA P H+ FL + + Sbjct: 51 ------VIDPGLRCKTCGGKYGEC---LGHFGRIELARPVYHVKFLNEIKRLLQYTCPKC 101 Query: 132 LRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKS 191 R I E ++ N + L+ + + + A LK Sbjct: 102 GRAIIPQKLKEQFLKKINEYINEGKYDELSNFIQSTVIPKINEYRKKHKKCPYCNAELKE 161 Query: 192 MDLEQECEQLREE----------LNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTV 241 + E+ +E L + +K+ L + +PEW++LTV Sbjct: 162 IKFEKPWYFYIKEKIGDKEEWVKLTPLDVRQWLEKIPDEDAKLFGII--NGRPEWLVLTV 219 Query: 242 LPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQE 301 + V P RP + L+ G + DL ++ NNR++ LL AP+ I+ MLQ Sbjct: 220 ILVPPVTARPSIILETGERSEDDLTHKIADIVRINNRIEELLSYGAPEPILEENWEMLQY 279 Query: 302 AVDALLDNGRRGRAI-TGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360 V DN + RPLK L IKGK+GR R+NL GKRV++S R VI+V P Sbjct: 280 HVATYFDNELPNVPKARHRSGRPLKGLLQRIKGKEGRLRRNLAGKRVNFSARGVISVDPR 339 Query: 361 LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVV------------ 408 + + + G+P+++A EL P I + L L + + ++ V+ Sbjct: 340 IDIDEVGVPEQVAKELTFPEIVTEWNLDWLKQKVLNGPESLDGANYVIDPNGRRFKIMEE 399 Query: 409 ------------WDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAA 456 W + +I L NR P+LH++ + V++ GK +L+P Sbjct: 400 NKEELAERLEPGWVVERHIINGDYALFNRQPSLHKMSMMGHRSVILPGKTFRLNPATTTP 459 Query: 457 YNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-R 515 YNADFDGD+M H+ E + E L +I++P G II ++D++ GLY ++ + Sbjct: 460 YNADFDGDEMNYHLVQNYEGKTEIEFLANVREHIVTPRYGLAIIGATEDIITGLYLLSLK 519 Query: 516 DCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVG 575 D + K ++ + + A+ + R K+ L+ + Sbjct: 520 DKIPFKDAIQLIEYNCKYFGKDKILKLVEKAKKEGRDYLTGKEVFSALLPDDLDFEIKTK 579 Query: 576 RAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARS 635 +I L ++++ + K++ + G + T + + Y R Sbjct: 580 NGEF-VIKNGILLKGVIDKEIVGVEKGKLIRELFERYGPEFTFKWLSDVTRLSVNYLTRE 638 Query: 636 GASVGIDDMVIPEKKHE----IISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAAND 691 ++ D+ IP++ E II +A+ EV + E+++ G + + Sbjct: 639 QLTISFSDIDIPKEVKEQIRKIIEKAKKEVDNLIERYKKGEIKPLPG--------RTIEE 690 Query: 692 RVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPD 751 + ++ L + E+ ++A SGARG + Q+ G+ G + Sbjct: 691 TLEIEILKVLNKARDEVGEVIEKHVDPTKGTMILAKSGARGKLLNLIQVVGLVGQQSISG 750 Query: 752 GSI--------------------IETPITANFREGLNVLQYFISTHGARKGLADTALKTA 791 + + F +GL+ +++F + L DT L+T Sbjct: 751 RRMEEGYKDRVLPHFKKGDKSAKARGFVEHGFADGLDPIEFFFHAASGKDALMDTTLRTP 810 Query: 792 NSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDR 838 SGYL RRLV V +DL V D + I G D + Sbjct: 811 KSGYLYRRLVSVLRDLYVENDRTVRDTFGNIYQFIWGEDGIAVQKSE 857 >UniRef50_UPI00006CF1E9 RNA polymerase Rpb1, domain 2 family protein n=1 Tax=Tetrahymena thermophila RepID=UPI00006CF1E9 Length = 1759 Score = 606 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 234/1334 (17%), Positives = 445/1334 (33%), Gaps = 199/1334 (14%) Query: 2 KDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARI 61 + K+ +Q +T + + + ++ S I SW E+K E K + + R+ Sbjct: 3 QSGQKYAYSQMETAKVNGVHFSILSEKEIESWCVCEIKNFE----NGNKEDEGFINDKRL 58 Query: 62 FGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLP 121 KD C+ C + G+I L P HI F+ ++ Sbjct: 59 GTTSKD----------------ACKTCNQK----NECPGHFGYINLRRPIYHINFINTVK 98 Query: 122 SRIGLLLDMPLRDIERVLY------FESYVVIEGGMTNLERQQILTEEQYLDALEEFGDE 175 + + E + S LE I ++ L+ L + + Sbjct: 99 QILLCVCHKCGAVREPPIKRNESGKPASKTEFAKLEKYLEVMNISQPKRRLNELYKILGK 158 Query: 176 FDAKMGAEAIQALLKSMDLEQ-------ECEQLREELNETNSETKRKKLTKRIKLLEAF- 227 + L + + + E + ++ + S + ++ K+I+ ++ Sbjct: 159 QSKCQNDKCNSYLFVKVSVVKFLNLKVAEKQSDKDAIEYDLSAEQALEILKKIRYADSKK 218 Query: 228 ----------VQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNN 277 +P +ILT L V PP +RP + + +L Y V+ N Sbjct: 219 LLAYKGQRKHDDDFLQPTNLILTKLLVPPPQVRPSIEMSSNMTCQDELTKCYEEVLKLNA 278 Query: 278 RLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGR 337 ++K D R +Q V ++DN + + +KS + +KGK+GR Sbjct: 279 QIKDNSDN-------RKLVEQIQSVVARMMDNDKPRLEALKIKSKVVKSFSQRLKGKEGR 331 Query: 338 FRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAA 397 FRQNL+GKRVD+S RSVI+ L L + G+P+ +A L P I + + + K Sbjct: 332 FRQNLMGKRVDFSARSVISPDANLWLDELGVPRSIADSLTVPEIVNQQNINRIRELWKQG 391 Query: 398 KK---MVEREEAVVWD------------------------------------ILDEVIRE 418 K M E +++ I + Sbjct: 392 KIKSIMKPNREKQIYEAYDAIICSGDRQADDNFDMHVNDDYSYCSQIKIGVIIERALQNG 451 Query: 419 HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQL 478 VL NR P+LH++ + ++ +L+ V YNADFDGD+M +HVP + E ++ Sbjct: 452 DYVLFNRQPSLHKMSMMGHRVRILPYSTFRLNLSVTTPYNADFDGDEMNMHVPQSYETRV 511 Query: 479 EARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVLTGPKEAERLY 537 E + I++P +P++ QD +LG+ T RD + + M L + Sbjct: 512 ELGYICHVPRQIVTPKANKPVMGLVQDSLLGVAMFTLRDKFLTREQVMNLVMWID----N 567 Query: 538 RSGLASLHARVKVRITEYEKDANGELVAKTSLK----------DTTVGRAILWMIVPKGL 587 G + A +K K ++ + + I L Sbjct: 568 WEGDLPMPAILKPEPLWTGKQIMSLVIPEQMTMTRFKGDKEDDKWFHKQDESIYIYKGEL 627 Query: 588 PYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIP 647 +N+A+ +++ + +G + T F + + G ++ D+V Sbjct: 628 IQGYMNKAIVGDGPGGLVHLIWLDIGHEETKNFMTRCQRVVNNWLIMFGHTISCADIVPS 687 Query: 648 EK----KHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQT 703 EK +I +A + +I+ FQ +K + + ++++ L+ Sbjct: 688 EKCSEEIEKIRKKAFEKYDKIELDFQDAAYIDQNNMHKAGKKIFDSFEVQVNSILNELRQ 747 Query: 704 ETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM---------------- 747 E+ + +E + +N M SG++G A + Q+ G+ G Sbjct: 748 ESE--KKAEETIKFKYNQFNKMVWSGSKGKATNLAQVMGLVGQQNIEGARIRNGFSRRTL 805 Query: 748 ----AKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDV 803 +G I + NF GL ++F T G R+GL+DTA+KT+ +GY+ R+LV Sbjct: 806 PHFCKDDNGIIARGFVVNNFYIGLKPYEFFFHTMGGREGLSDTAVKTSRTGYIQRKLVKA 865 Query: 804 AQDLVVTEDDCGTHEGIMMTPVIEGGDVK--EPLRDRVLGRVTAEDVLKPGTADILVPRN 861 +D++V D M+ G D E + + +G V ++ + Sbjct: 866 LEDVIVRYDGTVRDSQGMIIQTCYGEDSLAGEFIETQKIGEVDYKEEDFQKEYRFVKANK 925 Query: 862 TLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQ 921 + W + ++ +S D + Sbjct: 926 ---SDDWLFQYTKLDQMENQISKEISRDVLIAIKEEF----------------------- 959 Query: 922 SIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTE 981 + M G + E + + GKL + Sbjct: 960 --------MRMINERNEGEDPKFILEQEYEELIEARNLFRKNFYFYAQEGKL-------D 1004 Query: 982 LKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMI 1041 + L GR ES K+ +T T P+ S F ++ Sbjct: 1005 INLPVNIGRMIESAKIEMS-----------QKNKTYTRDQCKTNPIQVYKSLLELFKNLD 1053 Query: 1042 DGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFL 1101 D E L + + ++++ D ++ Sbjct: 1054 DYAVKRGMEYESLALFKAHIRLHLGSKKIVLRHKLSMEVFDKLTKEIFD---KFKKAISH 1110 Query: 1102 PGKAIVQLEDGVQISSGDTLARIPQESGGTKD--ITGGLPRVADLFEARRPKEPAILAEI 1159 PG+ I + + G D +T G+PR+ ++ +A + E+ Sbjct: 1111 PGETIGAISAQSVGEPTTQMTLNTFHFAGVSDRNVTLGVPRLQEILDASK---NVKTPEM 1167 Query: 1160 SGIVSFGKETKGKRRLVITPVDGSDPYEEM--IPKWRQLNVFEGERVERGDVISDGPEAP 1217 + G K R+ +++ D E I + + ++ IS Sbjct: 1168 TVFFENGLRKKIFRKDMMSNYDAESFKREYDEIVSQERQEILRLKQEIEYQTISYYINQT 1227 Query: 1218 HDILRLRGVHAVTR 1231 + + + + Sbjct: 1228 RIVYKSKDDEDFQQ 1241 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 98/551 (17%), Positives = 189/551 (34%), Gaps = 68/551 (12%) Query: 869 CDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGT 928 + + +R +S + + + D + I + GE IG I+AQS+GEP T Sbjct: 1071 AHIRLHLGSKKIVLRHKLSMEVFDKLTKEIF--DKFKKAISHPGETIGAISAQSVGEPTT 1128 Query: 929 QLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITS--RNTELKLID 986 Q+T+ TFH G + R +++ L K+V + + R + Sbjct: 1129 QMTLNTFHFAGVSDRNVTLGVPRLQEI----LDASKNVKTPEMTVFFENGLRKKIFRKDM 1184 Query: 987 EFGRTKESYKVPYGAVLAKGDGEQVAGGETV----ANWDPHTMPVITEVSGFVRFTDMID 1042 ES+K Y ++++ E + + + ++ + ++ + F + Sbjct: 1185 MSNYDAESFKREYDEIVSQERQEILRLKQEIEYQTISYYINQTRIVYKSKDDEDFQQQDN 1244 Query: 1043 GQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLP 1102 +D+L L ++ + + +D G + + Sbjct: 1245 IFDDDNISDDLEDPIVL-IIYFDTQKTTIDTFELLNAKIRKIADDSKKWGNLIVEKKQFE 1303 Query: 1103 GKAIVQLEDGVQISSGDT---------LARIPQESGGTKDITGGLPRVADLFEARRPKEP 1153 I D Q+ G + + ES GG+ ++ ++ ++ KE Sbjct: 1304 KGQIHVKFDSTQLGQGQQNPDSQMNAYSSLLLFESEFKDAYIGGIQKIQKVYPTQK-KEF 1362 Query: 1154 AILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDG 1213 E I K +E I N+ E +V++ D Sbjct: 1363 RPWVENECICEAPKPGAA--------FFTERKPQEHIFNTSGSNLKEVLKVDKVDATRTY 1414 Query: 1214 PEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD 1273 +I+ + G+ A R IVN+++ V G+ IN +H+ ++ M + Sbjct: 1415 SNDIQEIITILGIEAGRRSIVNQIRVVIEPYGIYINYRHLAILAEWMTVRG--------- 1465 Query: 1274 FLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLT 1333 R+ NR GI + S + +SF+ET +L Sbjct: 1466 ----------RLTPINRN----------------GINRIP--GLSCLRKSSFEETVDILN 1497 Query: 1334 EAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQVTAEDASASL 1393 AA+ ++D+L+G+ EN+I G+ GTG + + + + T E S Sbjct: 1498 TAAIFFEKDDLKGVTENIIFGQNCDIGTGCFDLLVDLNKVGEFKTKRQVEQTLEMEDYSE 1557 Query: 1394 AELLNAGLGGS 1404 E S Sbjct: 1558 NESSRYENTPS 1568 >UniRef50_C7DHC4 DNA-directed RNA polymerase n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DHC4_9EURY Length = 844 Score = 604 bits (1556), Expect = e-170, Method: Composition-based stats. Identities = 213/875 (24%), Positives = 352/875 (40%), Gaps = 95/875 (10%) Query: 17 FDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYK 76 + IK SP+MI+ S ++ P+T N + P GL R+ Sbjct: 6 IEYIKFTSISPEMIKKMSVAKLIVPDTYNEDGY-PIDGGLVDQRLG-------------- 50 Query: 77 RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIE 136 + G+ C+ CG GH+EL P H F KS+ +L Sbjct: 51 -VIDPGLKCKTCGGRAKSCT---GHFGHLELIRPVIHPEFAKSIY----FMLQSTCESCH 102 Query: 137 RVLYFESYV-VIEGGMTNLERQQILTEEQYLDALEEFG------DEFDAKMGAEAIQALL 189 R+L E + + M +L E+ ++ G A + L Sbjct: 103 RILLGEDQISEAKEAMKSLVVSDSEDEQHEIEKNAVLGGVLKKLKTVKKCPHCGAPKRKL 162 Query: 190 KSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDL 249 K + ++ +T + +PEW +LT L V P ++ Sbjct: 163 KFERPTFFYLE-GNKMKPDEIRDWLSGITDEDLKMFNMDAKAARPEWFVLTALLVPPVNV 221 Query: 250 RPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDN 309 RP + L+ G + DL ++ N RL++ +D AP II+ + +LQ V +N Sbjct: 222 RPSITLESGERSEDDLTHKLVEIMRINQRLEQDIDAGAPQIIIDDLWELLQYHVTTYFNN 281 Query: 310 GRRGRAI-TGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGL 368 G + + RPLK++A +KGK+GR R NL GKRV++S R+VI+ L ++Q G+ Sbjct: 282 ETPGVPVARHRSTRPLKTIAQRLKGKEGRLRYNLSGKRVNFSARTVISSDSSLTVNQVGI 341 Query: 369 PKKMALELFKPFIYGKLELRGLATTIKAAKK----MVEREEAVVWDI------------- 411 P KMA L P K + ++ + V ++ + + Sbjct: 342 PIKMAENLTVPVYVTKWNIDAAKKFLENKEYPTVVNVITKDGMRKRVSDLNREELLKEVE 401 Query: 412 -----LDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQM 466 ++I VL NR PTLHRL I A ++ GK ++LH + YNADFDGD+M Sbjct: 402 PGYVLERQLIDNDIVLFNRQPTLHRLSIMAHRVKVLPGKTLRLHVSIAYPYNADFDGDEM 461 Query: 467 AVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMV 526 +HVP TLEAQ EAR LM +LSP +G+PII +D + G+Y +T+D Sbjct: 462 NLHVPQTLEAQAEARYLMQPKYLVLSPRDGQPIIFSEEDEIAGIYLLTKDNA-------Y 514 Query: 527 LTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKG 586 + + L G+ L + + + K L+ K ++ R + +I Sbjct: 515 FSKEESCRMLSNVGIYELP-KAERDGSYSGKAIFSMLLPKGINFESKASRGKV-VIKNGV 572 Query: 587 LPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDD--- 643 L I++ + K +K++ + G + T F ++ A G ++ + D Sbjct: 573 LEEGIIDDKIIGKEGAKLIRKLFVDYGPEVTEQFILRVNKLALRVAYLHGLTISVKDYYN 632 Query: 644 -MVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQ 702 + +K EII +AE + E+ + ++ G + Y K + + L Sbjct: 633 SEQVNREKAEIIKDAETKAYELMKSYKDGKLEPLPGYTKKQTLEM--------LLQAQLS 684 Query: 703 TETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIE------ 756 + N+ Y+MA GARG+ + Q++ G + G Sbjct: 685 QARNTASKALSKVLDEKNNAYLMASIGARGNILNMVQMSMFLGQQSVRGGRPTRGYSGRV 744 Query: 757 --------------TPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVD 802 +T+ F +G+ Q F+ G+R +L TA SGY+ RRL++ Sbjct: 745 LPYFKKNDKNPEAKGFVTSCFFDGMEPRQMFMHAMGSRDSAMTKSLVTAVSGYMQRRLIN 804 Query: 803 VAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRD 837 QD V +D + + GGD +P + Sbjct: 805 AMQDFYVDKDLSVRDASGALIQTLYGGDGVDPTME 839 >UniRef50_Q3SE61 DNA-directed RNA polymerase n=2 Tax=Paramecium tetraurelia RepID=Q3SE61_PARTE Length = 1751 Score = 602 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 233/1319 (17%), Positives = 460/1319 (34%), Gaps = 138/1319 (10%) Query: 7 FLKAQTKTEEFDAIKIALASPDMIRSW-SFGEVKKPETINYRTFKPERDGLFCARIFGPV 65 F + + ++ L S ++I+ W E+K+ +T N P+++GL R+ Sbjct: 8 FTYSTAPIAKVRRVEFGLMSHELIKEWTGDIEIKELQT-NELDGTPKQNGLNDLRMG--- 63 Query: 66 KDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIG 125 + C+ CG +TK + G IEL P H+ FL+ + + Sbjct: 64 ------------VNTNAQKCKTCG----ETKYCQGHFGRIELNKPVYHVGFLQIVKKVLK 107 Query: 126 LLLDMP--LRDIERVLYFESYVVIEGGMTNLERQQILTE----------EQYLDALEEFG 173 + LR + ++S+ + N +R + + ++ + Sbjct: 108 CICHSCGKLRQPQSEDAWQSFQKAKEHRLNRKRLNEIVKLLGRIEKCETSKHKQEENQGN 167 Query: 174 DEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNK 233 D+F + IQA+ + ++ ++ +EL KK+ ++ F + ++ Sbjct: 168 DDFCGEKIPTRIQAINGQIKIQYNTKEAAKELTAERCLEIFKKIRDEDAIILGFTKD-SR 226 Query: 234 PEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVR 293 P +I+ L V+PP +RP + ++ R A +Y+ ++ +NN + A + Sbjct: 227 PRDLIIKFLLVMPPQVRPAIEMNPARIAQDQYTQIYKSILQKNNEIANCSSDAERVRLAP 286 Query: 294 NEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRS 353 R V ++D+ + G+ I + +PLKS+ +KGK+GRFRQNL+GKRVD+ RS Sbjct: 287 ELMRE----VAKIIDSEKAGK-IKMKSTQPLKSIRARLKGKEGRFRQNLMGKRVDFCARS 341 Query: 354 VITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAK--------------- 398 VI+ L + + G+P+ +A +L P + L + K K Sbjct: 342 VISPDANLGMDELGVPQIVADQLTIPEEVTEYNLERVIQLAKTNKIKYVIVPITDPRSKQ 401 Query: 399 --------------KMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEG 444 + ++ + + VL NR PTLHR+ + ++ Sbjct: 402 RKFQALYFDFTDTEDQIRQKINQGVIVERCLQDGDFVLFNRQPTLHRMSMMGHRVRILPY 461 Query: 445 KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQ 504 +L+ VC YNADFDGD+M +HVP + E E + L I++P + +P++ Q Sbjct: 462 STFRLNLSVCTPYNADFDGDEMNMHVPQSYETIAELKYLAHVPRQIVTPKSNQPVMGIVQ 521 Query: 505 DVVLGLYYMT-RDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGEL 563 D +LG T RD + + M L E +G + A +K + K + Sbjct: 522 DSLLGCCLFTQRDTFLTRDQVMHLMMWNE----QFTGELPMPAILKPQELWTGKQIMSMI 577 Query: 564 VAKTS-----------LKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRIL 612 + ++ K I L I N+ L + +++ C+ L Sbjct: 578 IPQSINTERGIREDDLRKPNWNADDKSLCIQRGSLVSGIFNKELVGQGAGSVVHLCWLDL 637 Query: 613 GLKPTVIFADQIMYTGFAYAARSGASVGIDD----MVIPEKKHEIISEAEAEVAEIQEQF 668 G + T+ F + +VG D + + + + E + E ++ + F Sbjct: 638 GAEKTLEFMTSCQRIVNNWLIMHSFTVGCQDIAPHINLVAETEKRSKEQDEEYIKLLQIF 697 Query: 669 QSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADS 728 RY++ + + M + IN E N +Y M + Sbjct: 698 LDAKKIQDNRYHQKGKRIMDSFEYSFN--MKLNKVRDDINSKVTETIDQIRNCMYKMIWA 755 Query: 729 GARGSAAQIRQLAGMRGLMAKPDGSI--------------------IETPITANFREGLN 768 ++G A+ + Q+ + G I + +NF +GL Sbjct: 756 KSKGEASNLAQITSLVGQQNLESKRIQFGFAYRTLPHFSKFDYGPEARGFVASNFFKGLK 815 Query: 769 VLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEG 828 ++F T G R GL DTA+KT+ +GY+ R+L+ +D+ V D + G Sbjct: 816 PTEFFFHTMGGRDGLIDTAVKTSRTGYIQRKLIKAVEDVFVRYDSSCRDSVGAVYQFHYG 875 Query: 829 GDVK--EPLRDRVLGRVTAEDVLKPGTADILV--PRNTLLHEQWCDLLEENSVDAVKVRS 884 D E + + + V + +++ + + +++ ++L E+ + ++ Sbjct: 876 EDKMAAEFIEHQEIKCVNLSNAQLEEKYELIKEQWFGSEIRQKYQNILTEDVIKDIE--- 932 Query: 885 VVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRA 944 + G D + + +A P +L + + Sbjct: 933 ----EDFEGQALLKGEFDEIKKIRNELRRLFLIDSA-----PKEELFTHYYLVVNIERII 983 Query: 945 AAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLA 1004 + + + N V +L+ ++E ++ LA Sbjct: 984 STIKINKKISDREKCRLNPIYVTQQVDELIQKVDKLLSYDLEERKDCINLFRTHLKVSLA 1043 Query: 1005 KGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDS 1064 D A + + + + + + T ++ Sbjct: 1044 SKDLCCRHRLTPEAFQELISEIIYKLKKSMAHPGEAVGAIAAQSLGEPTTQMTLNTF--H 1101 Query: 1065 AERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTL-AR 1123 G K++ + + + T YF P +LE L Sbjct: 1102 KSGVTGDKNVTLGVPRLQELLDASKKTKTPSLTIYFDPPLEYAELELKDDKDKKSYLKTE 1161 Query: 1124 IPQESGGTKDITGGL-----PRVA-DLFEARRPK-EPAILAEISGIVSFGKETKGKRRLV 1176 D T + R+ F K E ++ + + ++ + Sbjct: 1162 QLVHPHKQDDFTQSMLVQMQGRILGQTFGQYIIKSEIYYQSDPNNPLHITEDQEDNFTDG 1221 Query: 1177 ITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVN 1235 I D + + + +E D I D D +++ + IV+ Sbjct: 1222 IFDQDEAKYKWILFLHMDHQKILSN--LETWDKIRDSIPKILDETQVKFGISSQNTIVD 1278 Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 107/645 (16%), Positives = 207/645 (32%), Gaps = 99/645 (15%) Query: 805 QDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLL 864 ++L E I ++ + + + + R+ + V + + L Sbjct: 967 EELFTHYYLVVNIERI-ISTIKINKKISDREKCRLNPIYVTQQVDELIQKVDKLLSYDLE 1025 Query: 865 HEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRD----LARGHIINKGEAIGVIAA 920 + C L + + C A + + + GEA+G IAA Sbjct: 1026 ERKDCINLFRTHLKVSLASKDLCCRHRLTPEAFQELISEIIYKLKKSMAHPGEAVGAIAA 1085 Query: 921 QSIGEPGTQLTMRTFHIGGA-ASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRN 979 QS+GEP TQ+T+ TFH G + +++ + + Sbjct: 1086 QSLGEPTTQMTLNTFHKSGVTGDKNVTLGVPRLQELLDASKKTKTPSLTIYFDPPLEYAE 1145 Query: 980 TELKLIDEFGRTKESYKVP----------------YGAVLAKGDGEQVAGGETVANWDPH 1023 ELK + ++ ++ G +L + G+ + E DP+ Sbjct: 1146 LELKDDKDKKSYLKTEQLVHPHKQDDFTQSMLVQMQGRILGQTFGQYIIKSEIYYQSDPN 1205 Query: 1024 TMPVITEVS------GFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPA 1077 ITE G + + D LS+L D + Sbjct: 1206 NPLHITEDQEDNFTDGIFDQDEAKYKWILFLHMDHQKILSNLETWDKIRDSIPKILDETQ 1265 Query: 1078 LKIVDAQGNDVLIPGTDMPA-------------QYFLPGKAIVQLED----------GVQ 1114 +K + N ++ P + + F P + +D Sbjct: 1266 VKFGISSQNTIVDPDSMNHKYIQIKYFHDYADQKKFKPERGKGNFDDEIAFDEENKTKTY 1325 Query: 1115 ISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRR 1174 + + T+ + +E+ + GG+ ++ + ++ K+ I + G + Sbjct: 1326 VDTPYTILKRLEETIRGYSL-GGISKITRILHSQIEKQFYINNKTGGFLKQAN------- 1377 Query: 1175 LVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIV 1234 G E + N+ E R+E D + ++I ++ G+ A +V Sbjct: 1378 ---VDGKGKWKIIEKYLETEGTNLKEILRLEHVDQRRTTTDDVYEISQVLGIEAARAALV 1434 Query: 1235 NEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEA 1294 E + ++ G+ IN +H+ ++ M + R+ NR Sbjct: 1435 GETRKIFNHYGIYINYRHLYLLYDWMTHRG-------------------RLTAVNRN--- 1472 Query: 1295 NGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVG 1354 GI + S + +SF+ET +L +AAV + D +RGL EN+I G Sbjct: 1473 -------------GINRIP--EVSVLRKSSFEETVEILYDAAVFSEIDHMRGLSENIIFG 1517 Query: 1355 RLIPAGTGYAYHQDRMRRRAAGEAPAAPQVTAEDASASLAELLNA 1399 +L P GTG + + ++ LAE Sbjct: 1518 QLCPHGTGCFELMVNAKNVKEFKLKSSHADKFTQGGEYLAEQSPY 1562 >UniRef50_Q98RN1 DNA-directed RNA polymerase n=1 Tax=Guillardia theta RepID=Q98RN1_GUITH Length = 1289 Score = 602 bits (1551), Expect = e-170, Method: Composition-based stats. Identities = 265/1446 (18%), Positives = 480/1446 (33%), Gaps = 262/1446 (18%) Query: 17 FDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYK 76 I+ + S + I +S ++ + L ++ Sbjct: 6 IHEIEFKIFSREEISGYSTIQLTNSNIFLKDKNTSQEGSLLDEKLG-------------- 51 Query: 77 RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIE 136 R IC C + + GH+ L+ P ++ F+K+ I +L M + Sbjct: 52 --NIRNQICSFCKDKFKFCQ---GHYGHLRLSMPVLNLGFIKT----IQCILQMVCKRCS 102 Query: 137 RVLYFESYVVIEGGMT--NLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSM-- 192 +L S I ++ ++ Y + LE+ E ++ + Sbjct: 103 SLLLRSSKEKIHFSFLLGKNSNNKVEKKKIYFNILEK-CKSHRKCPNCEFSNGKIRKISN 161 Query: 193 -----DLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPP 247 D++ ++ E L K+ L G + E +I +P+ P Sbjct: 162 LAFLHDIDNSKNEINEILGPLKIFQIFSKINAEDLELIGVNDYGFRIENLIFFFIPIPPS 221 Query: 248 DLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALL 307 +RP + +D DL + N N +LK L+ ++ LQ Sbjct: 222 IIRPSIRIDTYTTNEDDLTIKLASIQNTNKKLKYELEQNMNYNRIKELWTFLQIECYQYF 281 Query: 308 DNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCG 367 D+ + + +KGK GRFR L+GKRVD+S R+VI+ P L L Q G Sbjct: 282 DSDF----FQKKFNLKFQGVFQRLKGKNGRFRGTLIGKRVDFSARTVISPDPNLFLSQIG 337 Query: 368 LPKKMALELFKPFIYGKLELRGLATTIKAAKK-------MVEREEAVVW----------- 409 +P + L P L I ++ R+ ++ Sbjct: 338 IPIIICKNLSFPEKLNFYNYERLKRCILRGNDRYPGVVSVITRDNKKIFLNKSNKKNMMF 397 Query: 410 ------DILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDG 463 I +++ +L NR P+LHRL I A + + K +L+ VC YNADFDG Sbjct: 398 FSKIGNSIQRHLVKNDIILFNRQPSLHRLSIMAHRIRIFKEKTFRLNHCVCKPYNADFDG 457 Query: 464 DQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGE 523 D+M +HVP + ++ EA L+ S NN +P NGE +I SQD + + +T + E Sbjct: 458 DEMNLHVPQSETSRTEAITLLNSYNNFYTPRNGEILIACSQDFLSYSFILTSRNIFFNKE 517 Query: 524 GMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVA--KTSLKDTTVGRAILWM 581 + E L+ + L A +K +I K E++ K + + Sbjct: 518 EVTGLISGEVSDLFNNI---LPAILKPKILWTGKQIFSEILFFDKNYYHLNLIKKQKTNY 574 Query: 582 IVPKGLPYSIVN----------------------QALGKKAI--SKMLNTCYRILGLKPT 617 + + N LGK ++ ++ Sbjct: 575 QIREKFTSRQFNTCSPFVCPIEGWTIIKNNLILSGRLGKTSLGTGNKMSLFSFSRNNNSA 634 Query: 618 VIFADQIMYTGF---AYAARSGASVGIDDM----VIPEKKHEIISEAEAEVAEIQEQFQS 670 + I+ + + G S I+++ VI +KK +IIS+A+ + + Sbjct: 635 SEILNSILKISILNQNWFSNYGFSFSINNVKPSKVICKKKEQIISKAK----NVHQSLNY 690 Query: 671 GLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGA 730 + V+D + + + ++ +L R K + NS +M SG+ Sbjct: 691 KKKITNKNSLMVLDTFEEKLNIILNSVKGDL------GRICVTTKNIDNNSASIMVASGS 744 Query: 731 RGSAAQIRQLAGMRGLMAKPDGSIIETP----------------------ITANFREGLN 768 +GS + Q+ G I+ I +F GL+ Sbjct: 745 KGSQLNLVQMMLTLGQQMISAKRILNGFSYRILPSQSFKKENMLFNEKGLIENSFYSGLD 804 Query: 769 VLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEG 828 ++F + R+GL DTA+KTA GYL RRLV +D+ + D + G Sbjct: 805 SKEFFFHSMAGREGLIDTAVKTAEIGYLQRRLVKSLEDISIMNDSTVRDSFGRIYQFTFG 864 Query: 829 GDVKEPLRDRVLGRVTAEDVLKPGTADI---------LVPRNTLLHEQWCDLLEENSVDA 879 GD P + + D + N ++ Sbjct: 865 GDNVNPENFSKFYSINSFDFSLKLKKSTDNYLLYVFLRAHFLRFFDSLTFSINLRNKINF 924 Query: 880 VKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGG 939 K+ ++ S F + Y + II+ G +G I+AQS+GEPGTQ+T++TFH G Sbjct: 925 EKILNIKSNFGYFEILIKKY-FQTFKLVIIDPGTGVGCISAQSLGEPGTQMTLQTFHSAG 983 Query: 940 AASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPY 999 S+ + + ++++S + ++ EF + K K Sbjct: 984 TGSQNITSGIPR-----------INEILSNSKNTKFPLISYDINFF-EFNKKKSRLKF-- 1029 Query: 1000 GAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSL 1059 + G + E + ++ + + I ++ + T + Sbjct: 1030 -FLKKIKIGFLINSIEIFLHRGFVSVKIHFIKKIYEYLDQSKIYYFIIKKFHDNTKIIKK 1088 Query: 1060 VVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGD 1119 + ++ ++ ND I ++ + L + +I GD Sbjct: 1089 STVFICKKKKN--------VVLQFHKNDFKIDDFNLNF---------INLYNFFRIHFGD 1131 Query: 1120 TLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITP 1179 + ES LF L I Sbjct: 1132 IVLTGFYESSKI--------NCNFLF---------------------------NNLEIKI 1156 Query: 1180 VDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQD 1239 D IP ++ + I G+ A IV E+ + Sbjct: 1157 SDNRFDILLNIPGIIFRKLY--------------CNNINSIYNFLGIEASRELIVLEITN 1202 Query: 1240 VYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVG 1299 ++ G+ +++H+ ++ M Sbjct: 1203 TFKSHGIFSDNRHVYLLADYMT-------------------------------------- 1224 Query: 1300 ATYSRDLLGITKASL--ATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLI 1357 ++ ++GI + L ES ASF++T L A++ + + G+ + +I G I Sbjct: 1225 --FNGFIIGINREGLTCNKESVFLLASFEKTMENLFNASLNHTKSKYIGVSDAIIFGNSI 1282 Query: 1358 PAGTGY 1363 P GTG Sbjct: 1283 PIGTGL 1288 >UniRef50_Q9BHM4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pleistophora sp. LS RepID=Q9BHM4_9MICR Length = 897 Score = 601 bits (1549), Expect = e-170, Method: Composition-based stats. Identities = 200/934 (21%), Positives = 357/934 (38%), Gaps = 141/934 (15%) Query: 103 GHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTE 162 GHIEL P HI + RI +L+ R+ + G +N Sbjct: 1 GHIELCKPVFHIGY----IGRIKKILESVCFYCSRI---------KNGDSNTRSLNSAWS 47 Query: 163 EQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIK 222 + +L D+ G++ + M++ ++ R L+ ++T Sbjct: 48 KNKSKSL------CDSGCGSKQPHFKREGMNIFTTIDENRVVLSGEKVAEIFARITDGDC 101 Query: 223 LLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL 282 F P ++++ + V+PP RP + L+G A DL +I N L++ Sbjct: 102 KALGFDSVNAHPSSLLISSVLVVPPACRPSISLEGFLRAEDDLTHKLSDIIKSNKTLRKN 161 Query: 283 LDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAIT-GSNKRPLKSLADMIKGKQGRFRQN 341 AP ++R +++LQ V+ +D G+ + RP+KS++ IKGK+GR R N Sbjct: 162 EAEGAPAHVIREYEQLLQFHVNTYMDTEIAGQPQALQKSGRPIKSISSRIKGKEGRIRGN 221 Query: 342 LLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMV 401 L+GKRVD+S RSVIT P + L + G+P+++A+ P + L+ +K Sbjct: 222 LMGKRVDFSARSVITAEPNIDLDELGVPREIAVIETFPEKVNSYNIIRLSELVKRGPAQY 281 Query: 402 EREEAVV--------------------WDILDEVIREHPVLLNRAPTLHRLGIQAFEPVL 441 V+ W + ++ VL NR P+LH++ + + Sbjct: 282 PGANYVIRGDGMKIDLRFTRSVELQIGWTVERHMVDGDYVLFNRQPSLHKMSMMCHRVRV 341 Query: 442 IEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIV 501 +EGK+ +L+ V YNADFDGD+M +H+P + +E R L +ILSP + +PI+ Sbjct: 342 MEGKSFRLNLSVTTPYNADFDGDEMNLHMPQSYITAVELRRLTHVPLHILSPQSNKPIMG 401 Query: 502 PSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANG 561 QD ++G+Y M+ D + + + ++ I E+ G Sbjct: 402 IVQDTLVGVYIMSGDSIFIEESTTHNLMY----------TVDIDSKCTPAILRPERIYTG 451 Query: 562 ELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFA 621 + + L T + IV L +V++ + + +++ Y G K + F Sbjct: 452 KQLFSMVLPPTLIYCTDNIKIVDGVLIKGVVSKKVVGSVRNSLIHILYLDYGAKVALSFF 511 Query: 622 DQIMYTGFAYAARSGASVGIDDMV----IPEKKHEIISEAEAEVAEIQEQFQSGLVTAGE 677 + I A+ + G S GI D + K +E + +A V + + + + Sbjct: 512 NNIQRVVTAFLSSYGFSCGIGDTIADFDTSMKINEELKDAVDSVNGLLLEGRDRKLRRRP 571 Query: 678 RYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQI 737 + + ++M L + ++ S N++ M +G++GS I Sbjct: 572 GLSL--------RETFESSVMQILNKARDTSGTVAQKSLSSDNNLRTMVLAGSKGSFINI 623 Query: 738 RQLAGMRGLMAKPDGSII----------------------ETPITANFREGLNVLQYFIS 775 Q+ G I + ++ GLN +++ Sbjct: 624 SQVTACVGQQTVEGRRIACGYYYHKRTLPHFSRDDLSPRARGFVVNSYLSGLNPDEFYFH 683 Query: 776 THGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIM-------------- 821 G R+GL DTA KTA +GY+ RRL+ ++L V D GI+ Sbjct: 684 AMGGREGLIDTACKTAETGYMQRRLIKAMENLRVEYDGNVGDGGIVRFGYGDGNDGWDAN 743 Query: 822 -------------------MTPVIEGGDVKEPLRDRV-------------LGRVTAEDVL 849 + + R + + RV + + Sbjct: 744 ISGECRGVQYNPIGEYIDAYIQCKSIEEEMKCERQTLSASSTIKCTMPINIKRVLSTAMR 803 Query: 850 K---PGTADILVPRNTLLHEQWCDLLEENSVDAVKVRS--VVSCDTDFGVCA------HC 898 P I L + L+ + + + + ++S + G+ C Sbjct: 804 FDTVPANYRIFFSSKRALIKNMLKYLDMDIIIHRVLLNNILLSLKSGDGISEEGLKYIQC 863 Query: 899 YGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTM 932 + IN E +G +AAQSIGEP TQ+T+ Sbjct: 864 ILLKKIKKARINPMEMVGTLAAQSIGEPATQMTL 897 >UniRef50_C4M3E6 DNA-directed RNA polymerase n=2 Tax=Entamoeba RepID=C4M3E6_ENTHI Length = 1570 Score = 599 bits (1543), Expect = e-169, Method: Composition-based stats. Identities = 252/1628 (15%), Positives = 504/1628 (30%), Gaps = 331/1628 (20%) Query: 1 MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60 M + Q E + S D IR S E+ K + + E +GL+ Sbjct: 1 MSSVELRKTFQESPVEITSTGFDFYSADEIRHMSVKEITKGTSFDL-LGNQELEGLYDPA 59 Query: 61 IFGPVKDYECLCGKYKRLKHRG-------------------------VICEKCGVEVTQT 95 + K+ C G IC KC Sbjct: 60 LGVFGKNTICPTCGLTEEGCPGHFGHFELEEPMYQPLLLTELLKLLRSICMKCHSLKASK 119 Query: 96 KVRRE---RM---------GHIELASPTAHIWFLKSLPSRIGLLLDM------------- 130 +V G +++ +++ + L Sbjct: 120 QVILGAAIEFERLAKNDIEGAMDIHGLVKEAQYIQRKANASRGKLKREQIEDEENLTVER 179 Query: 131 -PLRDIERVLYFE---------SYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKM 180 +++E + E S++ + + + I D + K+ Sbjct: 180 EVDKELESIFKKECGKGIKKDISFIHTDTHCKAVRNELIAHMVALKDKPCPYCKTVSPKI 239 Query: 181 GAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRI--------KLLEAFVQSGN 232 + + + R E + + + K ++L S Sbjct: 240 VLNDSKTGFVFYGENTDAAKNRSEHKYETTPSYIMNILKEAWGHNEIQNEVLSRMYYSQM 299 Query: 233 KPE-----------WMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKR 281 + + VLP+ P R L G + + YR +I +N LK Sbjct: 300 RGGEKLDVIVPSYHMFFVEVLPIPPSRFRQLNKF-GDLISDHPQSIYYRTIIESSNALKV 358 Query: 282 LLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQN 341 + A D + +Q+A + L+ N S+ +++ K+G FR N Sbjct: 359 RREGTALDYPEKYFIDQMQKAYNLLI---------LTGNADEGISMKSILEHKKGLFRNN 409 Query: 342 LLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAA---- 397 ++GKRV+Y+ R+VI+ P+L + G+P A+ L + + + Sbjct: 410 MMGKRVNYAARTVISPDPFLPTNTIGMPLPFAMRLTIAVPVNERNYEEMKQAVINGPQVW 469 Query: 398 --------------------------KKMVEREEAVVWD---------ILDEVIREHPVL 422 K+ E E +V D + VI VL Sbjct: 470 PGALYIENEWGHKIVLLDDSNPYNKTKRQGEAERLLVIDPKAPRSFKTVFRHVIDNDMVL 529 Query: 423 LNRAPTLHRLGIQAFEPVLIE-GKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEAR 481 NR PTLH+ GI +++ K I++H C +NADFDGD+M +H+P ++EA+ E Sbjct: 530 SNRQPTLHKPGIMGHYVKVLKIEKTIRMHYANCNTFNADFDGDEMNLHLPQSMEARSEVM 589 Query: 482 ALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYR--S 539 + +S + P NG+P+ QD V+ + +T+ E +Y S Sbjct: 590 NIALSDEQYVVPKNGQPLRGLIQDHVISSFMLTKRDTFFTKEEYCQIVYTALYGIYEQYS 649 Query: 540 GLASLHARVKVRITEYEKDANGELVAKTSLKDTTVG------------------------ 575 + A +K K ++ S T+ Sbjct: 650 IRIPMPAILKPIPKWTGKQVVTAILMHISTNHCTINFEGKCKVSTNEINRGGYQTKKERK 709 Query: 576 ---------------RAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIF 620 L +I + +++ + +++ Y + K + + Sbjct: 710 LMKQKDEFTEKWSGANDSLCIIKDSQMLTGTLDKNQIGASNQSLIHAIYELYNGKVSGMC 769 Query: 621 ADQIMYTGFAYAARSGASVGIDDMVIPE-----------KKHEIISEAEAEVAEIQEQFQ 669 + Y R G + +DD ++ K +E+ A A+ +++ + Sbjct: 770 LTLLSRLLTTYLQRIGHTCSLDDCMLKPEFDNKRTEMLNKTNELARTAIAKHFKLEGHSK 829 Query: 670 SGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSG 729 + A + + +D V + + + + +NS+ +M +G Sbjct: 830 YDIDLALANARRRPQLSKELDDAVKTEVNECTSNVIKECIPYGQLRAFPWNSLALMTTTG 889 Query: 730 ARGSAAQIRQLAGMRGLM--------------AKPDGSIIE------TPITANFREGLNV 769 A+GS Q+ + G P + I + F G+ Sbjct: 890 AKGSKVNHSQITCLLGQQELEGRRVPVMATGKTLPSFPRYDTSARAGGFIASRFLTGVPP 949 Query: 770 LQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGG 829 ++F R+GL DTA+KTA+SGYL R ++ + + L V D + + G Sbjct: 950 QEFFFHCMAGREGLIDTAVKTASSGYLQRCVIKMLESLHVEYDYSVRESDGSIIEFMYGD 1009 Query: 830 DVKEPLRDRVLGRV-----TAEDVLKPGTADILVPRNTLLHEQWC---DLLEENSVDAVK 881 D + ++ L + + ++ ++ + + C + Sbjct: 1010 DGIDVMKSGFLNNIDFWANNYDALVSKYETKAILSKFKKGFSRACKLQKKCLRHPEKYEP 1069 Query: 882 VRSVVSCDTDFGVCAHCYGRDL-----------------------------ARGHIINKG 912 V+S+ S + + Y + + +IN G Sbjct: 1070 VQSIYSPSNNLAAVSEKYYKLINDYIKEDKRGEFKSGKLDPETFKVMMMLKYNKSLINPG 1129 Query: 913 EAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGS--------------I 958 E +GV+A QSIGEP TQ+T+ TFH+ G ++K + Sbjct: 1130 EPVGVLAGQSIGEPSTQMTLNTFHLAGRGDVNVTLGMPRIKELVMFAKKEIATPSMILYL 1189 Query: 959 KLSNVKSVVNSSGKLVITSRNTELK-------LIDEFGRTKESYKVPYGAV---LAKGDG 1008 K N K+ + L + ++ +I G+ + Y + + D Sbjct: 1190 KEPNQKNTEKLAKLLTKVTLANIIEGIKCLDSIIVHEGQRRRQYTIDLTLIDKYEEVVDF 1249 Query: 1009 EQVAGGETVANWDPHTMPV-----------ITEVSGFVRFTDMIDGQTITRQTDELTGLS 1057 + + + + + VSG + + ++ + Sbjct: 1250 NTTEITKKIKSVLMNEIAKRQQSKVGIDIDYKGVSGEEAEEKVNEESEDVQEKINKGKVI 1309 Query: 1058 SLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISS 1117 V + + +++ K + ++ + + + Sbjct: 1310 EEEVPEEEQNEMSEEEIETEEKSGSSSSSEEEEKEEKKSPLEEEKEEIKEKPNLVEKEEK 1369 Query: 1118 GDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVI 1177 G + D + V + E IL E IV +K K I Sbjct: 1370 GKKQHLVVSVLLNVNDKVSMVSVVEKVIE------KIILYECPHIVRGIPLSKKKEGRTI 1423 Query: 1178 TPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEV 1237 V + + G V+ V ++ + +L + GV A +++E+ Sbjct: 1424 YYVMTEGV-------NFRAALQFGNLVDVDTVETN---DVYAVLNMYGVEAARTVLIHEI 1473 Query: 1238 QDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGK 1297 V++ G+ ++ +H+ ++ M Sbjct: 1474 DSVFKAYGIDVDPRHLNLVADYMT------------------------------------ 1497 Query: 1298 VGATYSRDLLGITKASLATE-SFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRL 1356 Y + + ++ + S + +F+ + L + V+G++D LR +V++G+ Sbjct: 1498 ----YEGEYKSLNRSGMDHNPSPFTKITFETSLGFLAKTCVSGQKDNLRSPSGSVVMGKN 1553 Query: 1357 IPAGTGYA 1364 + GTG Sbjct: 1554 MVFGTGAF 1561 >UniRef50_Q9BHZ7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Loma acerinae RepID=Q9BHZ7_9MICR Length = 894 Score = 598 bits (1541), Expect = e-169, Method: Composition-based stats. Identities = 196/904 (21%), Positives = 365/904 (40%), Gaps = 84/904 (9%) Query: 103 GHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTN--------- 153 GH++L P H+ ++ I +L+ R+ ++ I+ M++ Sbjct: 1 GHMDLVKPVFHVGYMNK----IKKVLETVCFYCSRLKGYDVSNSIDAEMSHVVETIVSEE 56 Query: 154 -LERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLE-------QECEQLREEL 205 E + + + L+ A M ++ Q L+K L +E + + L Sbjct: 57 KKENLKNKKKIKSLNFWWSLCKAKTACMHCQSKQPLIKRDGLSLTAFIKGEESTEGKVIL 116 Query: 206 NETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDL 265 N + K+++ + F + ++PEWMI++VL V +RP V L+G DL Sbjct: 117 NGEKVSSIFKRISTEENEMLGFDEKYSRPEWMIISVLNVHAMSVRPSVVLEGTLRGEDDL 176 Query: 266 NDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAIT-GSNKRPL 324 ++ N L++ AP I+R+ + +LQ V L+DN G + + RPL Sbjct: 177 THKLSDIVKCNKNLEKHEKEGAPGHIIRDYENLLQYHVATLMDNSIPGLPQSLQKSGRPL 236 Query: 325 KSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGK 384 KS++ +KGK+GR R NL+GKRVD+S RSVI+ L L + G+P ++A P Sbjct: 237 KSISARLKGKEGRMRGNLMGKRVDFSARSVISPDSNLSLDEVGVPIQIAKIHTFPEKVTS 296 Query: 385 LELRGLATTIKAAKKMVE------REEAVVWDILDEVIREHPVLLNR-----------AP 427 ++ L I RE + + +++ R + + R Sbjct: 297 FNIQKLQKLIDNGPNKYPGANFVTRETSEIDLRYNKISRTNNRMHRRATHDSEISYSLQT 356 Query: 428 TLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMST 487 L + + A +P + G+ +L+ V YNADFDGD+M +H+P + + E L+ Sbjct: 357 LLCIMSMMAHKPRFMPGRTFRLNLSVTTPYNADFDGDEMNLHMPQSYNTRAELEYLVKVK 416 Query: 488 NNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHAR 547 +N++S +P++ QD ++G+ MT D + + + + L L + Sbjct: 417 HNVVSCQGNKPVMGIVQDSLVGVKIMTGDSIFFDLFNLNKLFFQIDFPDSNTLLMKLAYK 476 Query: 548 VKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNT 607 + I +K G+ V L + R + ++ L + +++ + + +++ Sbjct: 477 ERPAILRPKKLFTGKQVFSFLLPEINYHRGDV-LVKKGILLHGSIDKKIVGTSQGSLIHV 535 Query: 608 CYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIP----EKKHEIISEAEAEVAE 663 + F + + A+ G S+GI+D V EK E I +A+ + Sbjct: 536 LCLE--NYEILHFFNSLQLIVHAFLLMHGFSMGIEDAVTDTYTIEKITESIQKAKLDAFY 593 Query: 664 IQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIY 723 + E+ + G + N + ++KA + + + K FN+I Sbjct: 594 LIEECRKGQMKKLPGMNFRETFESRITQILNKARDTSGRYTSDSFAPEY-RKGKPFNNIL 652 Query: 724 MMADSGARGSAAQIRQLAGMRGLMAKPDGSI-------------------IETPITANFR 764 MM ++G++GS I Q+ G I + ++ Sbjct: 653 MMVEAGSKGSLINISQIIACVGPQNVEGHRIGFSAQRTLPHFHKDDNRPESRGFVENSYL 712 Query: 765 EGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTP 824 GL +++ G R+GL DTA+KTA +GY+ RRL+ ++ ++ D E + Sbjct: 713 SGLRPDEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMENCKISFDGSVRSEQ-EIIS 771 Query: 825 VIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPR---------NTLLHEQWCDLLEEN 875 G D + + + RV P D L+ + + + L++ Sbjct: 772 FNYGDDGFDAAKIERV-RVCDSTFYLPFNFDRLINDKGSSPAKISTDSVKTKLINELKQF 830 Query: 876 SVDAVKVRSVVSC-------DTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGT 928 + + V V + + R + E +G +A+QSIGEP T Sbjct: 831 TSNLVIKAYVTENTPRLQRLSLNELTELIQKVKSRYRAALCPMNEMVGTLASQSIGEPAT 890 Query: 929 QLTM 932 Q+T+ Sbjct: 891 QMTL 894 >UniRef50_A1YIC5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Chytriomyces hyalinus RepID=A1YIC5_9FUNG Length = 960 Score = 596 bits (1536), Expect = e-168, Method: Composition-based stats. Identities = 197/999 (19%), Positives = 350/999 (35%), Gaps = 123/999 (12%) Query: 104 HIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEE 163 HI L P +I ++K++ +L+ R+ ++ + E Sbjct: 1 HILLNCPMYNIGYIKTV----KKILECVCHRCARLRLQPGDHKYRKLTMIKDKFKYAWES 56 Query: 164 QYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKL 223 + E+ D + L + + + R L +++ +K+T Sbjct: 57 CKNKVVCEYPDCETQLLPIRRHGIELFFDQKKVDNKLPRVPLYADQAKSILEKITDETCR 116 Query: 224 LEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLD--GGRFATSDLNDLYRRVINRNNRLKR 281 L ++PEWMI TV+PV PP +RP V +D G DL + +I NN L + Sbjct: 117 LLGLNPDSSRPEWMIFTVIPVPPPCMRPSVHIDVANGGKGEDDLTHMLTNIIRYNNLLGK 176 Query: 282 LLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAIT-GSNKRPLKSLADMIKGKQGRFRQ 340 K LQ + +DN G R +KSL+ +KGK+GR R Sbjct: 177 NESSKTA----IEYKEQLQIHITTYIDNEVSGVPPALQKGGRMIKSLSARLKGKEGRIRG 232 Query: 341 NLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAK-- 398 +L+GKRVD+S R+VIT P++ + + G+P +A L P L + + AK Sbjct: 233 HLMGKRVDFSARTVITGDPHISIEEVGVPLSVAKTLTFPERVTSYNLDRMQALVNNAKNY 292 Query: 399 ---KMVEREEAVVWD---------------ILDEVIREHPVLLNRAPTLHRLGIQAFEPV 440 + V E D + ++ VL NR P+LH++ + A Sbjct: 293 PGARYVINERGRRIDLEVAKTTPLIEIGDIVERHMVTGDTVLFNRQPSLHKMSMMAHIVR 352 Query: 441 LIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPII 500 ++ + +L+ VCA YNADFDGD+M +H+P + E E + L M ++ ++SP + +P+ Sbjct: 353 VMPYSSFRLNVNVCAPYNADFDGDEMNLHMPQSYETVAELQTLSMVSSLLVSPQSNKPVN 412 Query: 501 VPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDAN 560 QD + G+ +T E M L + A K K Sbjct: 413 GLVQDALCGIRKLTMRDTFVNFEDM----MDLVMCLKEFPVIPPPAIFKPIPLWTGKQII 468 Query: 561 GELVAKTSLKDTTVGRAI--------------------------------LWMIVPKGLP 588 + L T+ A +I + Sbjct: 469 SLCLPDIDLTGNTLTHADHEDIFRSTTKDLNETCTRKAESEFYSATPTDSRVLIQSGIIV 528 Query: 589 YSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPE 648 + + + + +++ Y G + F D A+ SG SVGI D ++ E Sbjct: 529 HGYLCKKTVGASSGGIVHIIYNDHGPRAACDFIDNSSRIVNAWLTNSGFSVGIGDALVSE 588 Query: 649 KKHEI----ISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTE 704 H + I +V + E + + + ++ ++ L Sbjct: 589 ITHAVFSSTIDTQLHKVQKTIESYHANELKPEGNFDCEQTKENQ--------IVGLLAKA 640 Query: 705 TVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSI---------- 754 N++ M ++G++GS I Q++ G I Sbjct: 641 RDSAGKTTLISGHPDNNLKQMVEAGSKGSVLNICQVSACVGQQMVEGKRIPFGFKDRTLP 700 Query: 755 ----------IETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVA 804 + +F +GL + F G R+GL DTA+KTA +GY+ RRLV Sbjct: 701 HFTKYDHSPAARGFVRNSFVKGLTPSELFFHAMGGREGLIDTAIKTAETGYIQRRLVKAL 760 Query: 805 QDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLL 864 +D+ V D + + G D + + +L Sbjct: 761 EDITVKSDGTVRNSRDDIIQFYYGEDGFDGTA-----------------IEYQTFPTMML 803 Query: 865 HEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIG 924 E N +D+ + + V R +I+ + A G Sbjct: 804 SESELYSRYYNGIDSEYAQLKKDQELLRRVLRLAEDRWPLPLNIMRMIITVKKRAITR-G 862 Query: 925 EPGTQLTMRTFH---IGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTE 981 P T+ T S ++ +I + S + S + SS +++ + ++ Sbjct: 863 LPDTEFTAEYIFQQTKAVVNSLRPSKLNINSEYNVSALFGILVSSILSSKQVLYVHKLSK 922 Query: 982 LKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANW 1020 + KE Y + ++ G+ V +++ Sbjct: 923 CQFDYLLILIKEKY---HRGLVQAGESVGVIAAQSIGEP 958 >UniRef50_B7S4C1 DNA-directed RNA polymerase n=2 Tax=Bacillariophyta RepID=B7S4C1_PHATR Length = 1674 Score = 596 bits (1536), Expect = e-168, Method: Composition-based stats. Identities = 231/1381 (16%), Positives = 448/1381 (32%), Gaps = 236/1381 (17%) Query: 199 EQLREELNETNSETKRKKLTKRIKLLEAFVQSGNK------PEWMILTVLPVLPPDLRPL 252 ++ ++ + + K+ + L V G+ + L +PV P RP Sbjct: 320 KKSDMFMHAGEVQAQIKRTWQTDPFLLHCVFGGSSQSLQDGYQLFFLQAVPVPPSRFRPA 379 Query: 253 VPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRR 312 + L+G ++I N ++ + + + LQ AV+ +D+ + Sbjct: 380 MYLNGMAV-EHSQTSYLSQMIRFNESIRESFAA-SDEPRAYSGWIDLQTAVNCFMDSAKD 437 Query: 313 GRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKM 372 + +++ K+G FR+N++GKRVDY+ RSVI+ PY+ ++ GLP+ Sbjct: 438 --PSATPTNLVAPGIKQILERKEGLFRKNMMGKRVDYACRSVISPDPYIGTNEIGLPRYF 495 Query: 373 ALELFKPFIYGKLELRGLATTIKAAKKMVE------------------------------ 402 A L P L ++ + ++ Sbjct: 496 ATVLTYPTPVTDLNVKEMRALVERGPHNYPGARWVELQGKRVDLGKMNTQKREAIAAQLL 555 Query: 403 ---REEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEG---KAIQLHPLVCAA 456 + + + ++ VL+NR PTLH+ GI A ++ K I++H C Sbjct: 556 TYLKRGGMPAIVGRQLRDGDYVLMNRQPTLHKPGIMAHRVRILHNPTQKTIRMHYANCNT 615 Query: 457 YNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-R 515 YNADFDGD+M H P + A+ EA+ + + + P +G P+ QD V+G +T R Sbjct: 616 YNADFDGDEMNCHFPQSDLARAEAQYIARTDLQYIVPTDGTPLRGLIQDHVVGGVKLTKR 675 Query: 516 DCVNAKGEGMVLTGPK-------EAERLYRSGLASLHARVKVRITEYEKDANGELV---- 564 D K E L E R + A V+ R K ++ Sbjct: 676 DTFFFKWEVQQLLFAALASLKGLEIIRSGTNIELVPPALVRPRELWTGKQVITIILNHLR 735 Query: 565 -------------------AKTSLKDTTVG---RAILWMIVPKGLPYSIVNQALGKKAIS 602 K+ DT G L +I+ L ++++A Sbjct: 736 KGSDRDSEKMSNLPGLSTSRKSKTPDTAFGAEQEEHLVLILDGELLRGVLDKAAFGATDF 795 Query: 603 KMLNTCYRILGLKPTVIFADQIMYTGFAYAA-RSGASVGIDDMVIPE----KKHEIISEA 657 +++ Y G + + + AY +G S ++D+++ + ++ ++ Sbjct: 796 SLVHAVYEAYGPEKAGLLLNMFGRLFTAYIQYFAGHSCRMEDLILTSASDISRRMLVQKS 855 Query: 658 EAEVAEIQEQFQSGLV-TAGERYNKVIDIWAAANDRVSKAMMDNL---------QTETVI 707 A + + A K+ + + + A +D Sbjct: 856 YNIGARAAKAWADSEGGKAASTAAKIGQLLSGTEGSTNFAALDGFMQSQLNPLSSAIVKK 915 Query: 708 NRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM--------------AKPDGS 753 +N+ +M +GA+GS Q+ G P + Sbjct: 916 CLPDGLAVPFPYNTFGLMTTTGAKGSIVNQSQVTCALGQQALEGRRVPRLSSGRTLPSFA 975 Query: 754 IIE------TPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDL 807 + + F G+ +Y+ R+GL DTA+KT+ SGYL R L+ ++L Sbjct: 976 PYDPNPRADGFVMDRFLTGIRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKHLEEL 1035 Query: 808 VVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQ 867 + D + + + G D +P + L + L +NT L Sbjct: 1036 KICYDYTVRNAEGSVVQFLYGEDGLDPTKASYLDCSEKSFEYIARNKESLERQNTALPFS 1095 Query: 868 WCDLLEENSVDAVKVRSVVSCDT------------------------------------- 890 L ++ V++ + + Sbjct: 1096 SIALAAADATRHVELENNQNLIAVADPILSTPARGHLLGSSGACVSERVAGATHNALNDP 1155 Query: 891 -DFGVCAHCYGRDLARG---------HIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGA 940 V D G + GEA+G IAAQS+GEP TQ+T+ TFH+ G Sbjct: 1156 EMMRVLKQINVSDADLGVLIGAKYSSSVCAPGEAVGSIAAQSVGEPSTQMTLNTFHLAG- 1214 Query: 941 ASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYG 1000 A +++ ++K+ S + L+L +F + V Sbjct: 1215 AGANVTLGIPRLREIIMTASRDLKTPTMSVPLDDSVTEKQALRLTRDFTKLTLMELVASD 1274 Query: 1001 AVLAKGD------------------------------GEQVAGGETVANWDPHTMPV--- 1027 + + G + VA + + Sbjct: 1275 RGVTVTEKLEKADNGMWSRAYYVTIKFHPAERIKEAFGLDIHDIAKVAAKNFVPLLSQNM 1334 Query: 1028 --------ITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALK 1079 + + + I + + + + ++ + G +L + Sbjct: 1335 KKELKRAAVEGDNAVIEVQGGDSRVYIKSRDQDERDADEIEIKEAPQARNGRDELNDNDQ 1394 Query: 1080 IVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKD-ITGGL 1138 + + G +Y K + ED +T + + S + I L Sbjct: 1395 DDEEDDENAEEDG-ADAVRYSDRRKESISYEDDDDQDDAETESMTGEHSPRSDSGIVNDL 1453 Query: 1139 PRVADLFE-------ARRPKEPAILAEISGIVSF--GKETKGKRRLVITPVDGSDPYEEM 1189 + E R ++ I+ E ++ + R L++ + + Sbjct: 1454 SSNTVVREKEASDWTLRAKEDELIVHERRNVIVLQPLRIDPAARPLLMVGLVEGAAATTL 1513 Query: 1190 IPKWRQLNV-FEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKI 1248 + R ++ F RG + ++ +L V + + N++ + GV+ Sbjct: 1514 VRSKRMIDQGFVNNEEGRGRCLQTAGVNFEEMYKLECVDH-NKLLSNDIWAIRCAYGVEA 1572 Query: 1249 NDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLG 1308 ++++ V G +V+ + + + +G A + Sbjct: 1573 AR-------SSIVQQIRGVFGA-----YGIEVDPRHLSLIADYMTFDGGYKAMNRIGM-- 1618 Query: 1309 ITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD 1368 T S + SF+ T L +AA+ DE++ N++VGR I GTG Sbjct: 1619 -----EETSSTLLQMSFETTLHFLRQAALVEDMDEMQSPSANIVVGRPIRHGTGAFTVLA 1673 Query: 1369 R 1369 + Sbjct: 1674 K 1674 Score = 94.6 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 18/109 (16%) Query: 6 KFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPV 65 K+ + + ++ + D +R+ S E+ + + T P +GL+ R+ GP+ Sbjct: 8 NNPKSAIVRRQIEKVQFGFYNDDDVRARSVVEITSSQAFDP-TNSPLPNGLYDVRL-GPL 65 Query: 66 KDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHI 114 KD E C C + + GHIELA P H Sbjct: 66 KDSE-------------PPCPTCALRASHCP---GHFGHIELAVPVYHP 98 >UniRef50_Q4A369 DNA-directed RNA polymerase n=2 Tax=dsDNA viruses, no RNA stage RepID=Q4A369_EHV86 Length = 1468 Score = 591 bits (1523), Expect = e-167, Method: Composition-based stats. Identities = 255/1517 (16%), Positives = 475/1517 (31%), Gaps = 220/1517 (14%) Query: 11 QTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYEC 70 T + + ++ D IR + V E Y P +G+ + Sbjct: 8 STNAKVVKKVNFSVYGSDAIRQNAVTRVN--EIALYTRGIPTHNGVNSLAMG-------- 57 Query: 71 LCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDM 130 R + C C + + G I L P ++ D Sbjct: 58 -------SSDRRIRCTTCNELMQKCP---GHNGEIRLPLPVYQALYI-----------DH 96 Query: 131 PLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLK 190 L+ + V +F S + + ++ ++ + + I+ Sbjct: 97 TLKVLRSVCFFCSEICLTDEDKVALMEKYTDDKTRFNHTYAIARTRKKCPHCKGIRPSYV 156 Query: 191 S---------MDLEQECEQLREELNETNSETKRKKLTKRIKLLEA--FVQSGNKPEWMIL 239 +D E E+ +E + + + IK +A F G P +I Sbjct: 157 RGPLGIKTEWVDKSFESEEEQEYAMQKFTPALAYSILDNIKDTDATNFFGKGLHPRDLIA 216 Query: 240 TVLPVLPPDLRPLVPLDGGRFA--TSDLNDLYRRVINRNNRLK----RLLDLAAPDII-- 291 T + V PP +RP + G D+ + + R N L+ + D P + Sbjct: 217 TSVLVPPPIIRPAISTAEGSRTKGQDDITLRLQEINRRGNELRLCMNKQEDSGLPTFLCD 276 Query: 292 -----------------------------VRNEKRMLQEAVDALLD--NGRRGRAITGSN 320 + + LQ V L++ R G + +N Sbjct: 277 ANKVLPQKTDTITYTVVDRLLNVDALTPDLIDRWNRLQADVFGLVNPAAIRGGMPASMAN 336 Query: 321 KRP----LKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALEL 376 K + D I+GK GRFR L+GKRV++SGRSVIT + + Q G+P ++A+ L Sbjct: 337 NNRNSANGKYIIDRIRGKNGRFRNCLMGKRVNFSGRSVITPDSTIDVDQLGVPYELAMIL 396 Query: 377 FKPFIYGKLELRGLATTIKAAKKMVEREEAVV-----------------------WDILD 413 P + L T I + ++V+ W + Sbjct: 397 TVPEKVTPSNIADLRTRILNGPTELIGAQSVINTEGDLISLKSCKNRADIVLRIGWIVER 456 Query: 414 EVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLT 473 + V+ NR PTLHR+G VL +GK +L+ VCA YNADFDGD+M +HV + Sbjct: 457 HLKNGDWVIFNRQPTLHRMGFNGHRVVLTKGKTFRLNLSVCAVYNADFDGDEMNIHVCQS 516 Query: 474 LEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEA 533 A E LM NI+S N +P QD ++G + MT V M+ Sbjct: 517 ACATSEVSTLMAINRNIISAQNNKPCFGIVQDSLVGAWLMTDPSVFLTRADMLRFRIYVK 576 Query: 534 ERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKD------TTVGRAILWMIVPKGL 587 + + A K + + T + T +I + Sbjct: 577 FANNGTTMLPPPAISKPKELWTGSQLISFVFPYTLMYQRGSISGITSYDTKDLLIQNGQI 636 Query: 588 PYSIVNQALGKKAISKMLNTCYRIL-GLKPTVIFADQIMYTGFAYAA-RSGASVGIDDMV 645 + ++++ + + + G K V F + + ++ S+G D V Sbjct: 637 LFGRLSKSTLGATAGAISDIIHHEHGGPKKAVEFLSDVQRVVNQWLLYKNSFSIGASDCV 696 Query: 646 IPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTET 705 E+ H + E + + L + + K + A +S +M Sbjct: 697 TNEQSHNEVVE---CIKSAVNNSKMILTSKVPKSLKEM-AEGATTRILSDVIMK------ 746 Query: 706 VINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSI----------- 754 + NSI +G++GS I Q+ G G I Sbjct: 747 --TATIIKNNAPPDNSIITCVTAGSKGSPLNIAQVCGQVGQQIVGGARILNGTSGRTLPC 804 Query: 755 ----------IETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVA 804 I +F GL ++F S R+GL DTA+KTANSGY+ R LV + Sbjct: 805 FKHGEHATVNANGYIQNSFMLGLQPTEFFFSAMSGREGLVDTAVKTANSGYIQRCLVKAS 864 Query: 805 QDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLL 864 +D + D + M+ + +R+ + + + ++ Sbjct: 865 EDNMCNYDGTIRNAQGMVVQFKYADNFDPCKVERIKVEPLLMTPEEIKRNAGPLEYDVIM 924 Query: 865 H--EQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQS 922 E +L +++ + V + + A + A+ + + Sbjct: 925 SLRENAQKVLSQSNKPLMDVVLLPINISRMFESATWNNDVPHEFDEESLLTAVSEVVHEI 984 Query: 923 IGE-PGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVV---NSSGKLVITSR 978 + + P + + + E +K + SVV ++ G S Sbjct: 985 VKKHPVCKYVVPLYIQWCMRIGNIPEHLNVKAFLCEVKHRCLSSVVAGGDAVGNTAALSI 1044 Query: 979 NTELK-------LIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEV 1031 G + +P + + T+ + T + + Sbjct: 1045 GEPSTQMTLNSFHTAGTGHAGVTMGIPRLKEVMGYSKQLRTPQTTL-EFSDKTPEELKAI 1103 Query: 1032 SGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIP 1091 S + + E + + + + + VL Sbjct: 1104 SAKLTRLTLSHVTENMNVVLEPSDVIDESYPEDVKFALKMDTYFAPDLSDPSMHVGVLEL 1163 Query: 1092 GTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKD--ITGGLPRVADLF-EAR 1148 + Y L I + + + DT + T D + + V+ F E Sbjct: 1164 NKHLLNDYNLTPAKIAPIIKSLACNIIDTDVHVSYSEVNTIDWWVRIRILDVSKHFPEVI 1223 Query: 1149 RPKEPAILAEISGIVSF---------GKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVF 1199 KE + V + I +G + + R + Sbjct: 1224 SNKEMCERGTVLRFVKLLCHEIKLGGFNGIEASAVDSIERWNGEKNEIVNVIQTRSTILH 1283 Query: 1200 EGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQ 1259 + D H+++ G+ A I NE+ G I+ +HIE+ Sbjct: 1284 RAYAIPGVDWTKVMTNDIHNVVNTLGIEAALTMIFNELHSTLTADGSYIDPRHIELTAST 1343 Query: 1260 MLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLA--TE 1317 M + + + + + L Sbjct: 1344 MTLRGYV----------------------------------------MPLNRHGLNNIKT 1363 Query: 1318 SFISAASFQETTRVLTEAAVAGKRDELRG-LKENVIVGRLIPAGTGYAYHQDRMRRRAAG 1376 ++ +SF+ET+ VL +AA+ + +++ G + ++++G+L GTG R+ + + Sbjct: 1364 GPLTRSSFEETSEVLKDAAIFAESEDVSGSVSASIMMGQLSAIGTG--RFDVRIPKPESI 1421 Query: 1377 EAPAAPQVTAEDASASL 1393 ++ +A+L Sbjct: 1422 SVKETSRIIKTKGTATL 1438 >UniRef50_P08968 DNA-directed RNA polymerase III subunit RPC1 n=8 Tax=Trypanosomatidae RepID=RPC1_TRYBB Length = 1530 Score = 584 bits (1506), Expect = e-165, Method: Composition-based stats. Identities = 192/932 (20%), Positives = 321/932 (34%), Gaps = 155/932 (16%) Query: 14 TEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCG 73 E A+ L S + + S L C R+ G VK+Y + Sbjct: 24 PVEISALHYGLLSRNDVHRLSV--------------------LPCRRVVGDVKEY-GVND 62 Query: 74 KYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLR 133 + R ICE CG+ + GHI+L +P H+ F ++ + Sbjct: 63 ARLGVCDRLSICETCGLN---SIECVGHPGHIDLEAPVFHLGFFTTVLRICRTICKRCSH 119 Query: 134 DIERVLYFESYVVI--EGGMTNLERQQILTEEQYLDALEEFGDEF--------------- 176 + + Y + L+R ++ Q + Sbjct: 120 VLLDDTEIDYYKRRLSSSSLEPLQRTMLIKTIQTDAYKTRVCLKCGGLNGVVRRVRPMRL 179 Query: 177 ---------------DAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRI 221 G L + + + RE +++ + ++L + Sbjct: 180 VHEKYHVEPRRGEGPRENPGGFFDAELRTACAYNKVVGECREFVHDFLDPVRVRQLFLAV 239 Query: 222 K----LLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNN 277 +L G P +++T L V P +RP DL Y ++ + Sbjct: 240 PPGEVILLGLAP-GVSPTDLLMTTLLVPPVPVRPRGCAGTTTVRDDDLTAQYNDILVSTD 298 Query: 278 RLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGR 337 ++ D + MLQ LLD+ G LKS A +K K GR Sbjct: 299 TMQ---DGSLDATRYTETWEMLQMRAARLLDSSLPGFPPNVR-TSDLKSYAQRLKSKHGR 354 Query: 338 FRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAA 397 FR NL GKRVDYSGRSVI+ P L + + +P +A L P K + ++ Sbjct: 355 FRCNLSGKRVDYSGRSVISPDPNLDVDELAVPLHVARVLTYPQRVFKANHELMRRLVRNG 414 Query: 398 -----------------KKMVEREEAV--------VWD-ILDEVIREHPVLLNRAPTLHR 431 KK ++ E V D + V+ VL NR P+LHR Sbjct: 415 PHVHPGATTVYLAQEGSKKSLKNERDRHRLAARLAVGDIVERHVMNGDLVLFNRQPSLHR 474 Query: 432 LGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNIL 491 + + A ++ + + + CA YNADFDGD+M VH T +A+ EA LM + NI+ Sbjct: 475 VSMMAHRARVLPFRTFRFNECCCAPYNADFDGDEMNVHFVQTEKARAEALQLMSTARNII 534 Query: 492 SPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKV 550 S NGEPII +QD + Y +T RD +GE + + G + Sbjct: 535 SAKNGEPIIACTQDFLAAAYLVTSRDVFFDRGEFSQMVS-------HWLGPVTQFRLPIP 587 Query: 551 RITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPY------------------SIV 592 I + + G+ + + ++ + +L P + Sbjct: 588 AILKPVELWTGKQLFELIVRPSPEVDVLLSFEAPTKFYTRKGKHDCAEEGYVAFLDSCFI 647 Query: 593 NQALGKKAIS-----KMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIP 647 + L KK + + + I G T +I Y G S+G+ D+ Sbjct: 648 SGRLDKKLLGGGAKDGLFARLHTIAGGGYTARVMSRIAQFTSRYLTNYGFSLGLGDVAPT 707 Query: 648 EK----KHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQT 703 + K +++ + + + ++G + + + L Sbjct: 708 PELNKQKAAVLARSVEVCDGLIKSAKTGRMIPLPGL--------TVKQSLEARLNTELSK 759 Query: 704 ETVINRDGQEEKQVSFNS-IYMMADSGARGSAAQIRQLAGMRGLMAKPDGSI-------- 754 + N+ +M SG++GSA I Q+ G I Sbjct: 760 VRDECGTAAVQTLSIHNNTPLIMVQSGSKGSALNIAQMMACVGQQTVSGKRILDAFQDRS 819 Query: 755 ------------IETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVD 802 + +F GL+ ++F T R+GL DTA+KTA +GY+ RRL+ Sbjct: 820 LPHFHRFEEAPAARGFVANSFYSGLSPTEFFFHTMAGREGLVDTAVKTAETGYIYRRLMK 879 Query: 803 VAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEP 834 ++L V D + + + G D +P Sbjct: 880 AMENLSVRYDGTVRNTKGDVIQLRFGEDGLDP 911 Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats. Identities = 78/469 (16%), Positives = 144/469 (30%), Gaps = 119/469 (25%) Query: 902 DLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLS 961 G G IAAQS+GEP TQ+T+RTFH G AS + + ++ + + Sbjct: 1132 SKYLRKACEPGTPCGAIAAQSVGEPSTQMTLRTFHFAGVASMSITQGVPRLVEVINANRN 1191 Query: 962 NVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWD 1021 VV + L+ N ++ + + E V Sbjct: 1192 IATPVVTAPVLLMEGEEN-------HCEIFRKRARFVKAQIERVLLREVV---------- 1234 Query: 1022 PHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLV-VLDSAERTAGGKDLRPALKI 1080 + V ++ IT+ + ++ +L +A T + I Sbjct: 1235 --SEIVEVCSDTEFYLRVHLNMSVITKLHLPINAITVRQRILAAAGHTMSPLRMLNEDCI 1292 Query: 1081 VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPR 1140 + + + A++ Sbjct: 1293 EVFSLDTLAVYPHFQDARWVH--------------------------------------- 1313 Query: 1141 VADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE 1200 F RR + GI G R +I S+ E + V Sbjct: 1314 ----FSLRRILGLLPDVVVGGI-------GGINRAMI----SSNGTEVLAEGAELRAVMN 1358 Query: 1201 GERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM 1260 V+ V+ + + R+ G+ A R IV+E+Q++ + + I+ +H+ ++ M Sbjct: 1359 LWGVDSTRVVCN---HVAVVERVLGIEAARRVIVDEIQNILKAYSLSIDVRHVYLLADLM 1415 Query: 1261 LRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESF- 1319 + +LGIT+ + +F Sbjct: 1416 TQ----------------------------------------RGVVLGITRYGIQKMNFN 1435 Query: 1320 -ISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQ 1367 ++ ASF+ TT L AA + D + +++IVG+ +P GT Sbjct: 1436 VLTMASFERTTDHLYNAAATQRVDRDLSVSDSIIVGKPVPLGTTSFDLL 1484 >UniRef50_A7J587 DNA-directed RNA polymerase (Fragment) n=10 Tax=Leotiomyceta RepID=A7J587_9LECA Length = 1002 Score = 581 bits (1496), Expect = e-164, Method: Composition-based stats. Identities = 167/805 (20%), Positives = 302/805 (37%), Gaps = 92/805 (11%) Query: 110 PTAHIWFLKSLPSRIGLLLDMPLRDIERV--------LYFESYVVIEGGMTNLERQQILT 161 P H+ + + + + + + L F + L + +++ Sbjct: 1 PVFHVGLMTKIKKLLETVCHNCGKILVDESNPAFADALRFRDPKRRFDAIWRLCKPKLVC 60 Query: 162 EEQ---YLDALEEFGDEFDAKMGAEAIQALLKSMDLE--------------QECEQLREE 204 E D +++ + G +Q ++ ++ + + ++ Sbjct: 61 ETAAVTEDDNMDKTKEPKHDHGGCGNVQPEVRREGMKLNGTWKPQKGDEENEGQQPEKKP 120 Query: 205 LNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGG--RFAT 262 + + + ++ +PEWMI+TVLPV PP +RP + +DGG Sbjct: 121 ITPQMALNIFRHISNDEIRKMGLSSDYARPEWMIITVLPVPPPPVRPSISVDGGNGMRGE 180 Query: 263 SDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAIT-GSNK 321 DL +I + ++ +P +V + +++LQ V +DN G+ + Sbjct: 181 DDLTYKLGDIIRASGNVRTCEAEGSPAHVVADFEQLLQFHVATYMDNDIAGQPQALQKSG 240 Query: 322 RPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFI 381 RP+KS+ +KGK+GR R NL+GKRVD+S R+VIT P L L + G+P+ +A L P Sbjct: 241 RPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPET 300 Query: 382 YGKLELRGLATTIKAA------KKMVEREEAVV-----------------WDILDEVIRE 418 ++ L +K K V R+ W + +I Sbjct: 301 VTPYNIQKLHQLVKNGPNDHPGAKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHIIDG 360 Query: 419 HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQL 478 + NR H+ + ++ +L+ V + YNADFDGD+M +HVP + E + Sbjct: 361 DYIXFNRHHAXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRA 420 Query: 479 EARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYR 538 E L M NI+SP P++ QD + G+Y + R V E ++ + Sbjct: 421 EINQLCMVPLNIVSPQRNGPLMGTVQDTLCGIYKICRRDVFLNKEQVMNILLWVPD---W 477 Query: 539 SGLASLHARVKVRITEYEKD------ANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIV 592 G+ A +K R K G + ++S + + + L Y + Sbjct: 478 DGVLPQPAILKPRPKWTGKQIISLVIPPGLNLTRSSSEGFSPLNDDGLFVSGGELMYGLF 537 Query: 593 NQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHE 652 N+ +++ + G + + F + + +G S+GI D + + Sbjct: 538 NKKSVGATSGGIIHIIFNEKGPEAAMNFFNGAQTVVNYWLLHNGFSIGIGDTIPDRNTIQ 597 Query: 653 IISEA----EAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVIN 708 I A + +VAEI + N + + L Sbjct: 598 RIENAVNQQKEDVAEITRSATENDLEPLPGMN--------VRETFESKVSKALNKARDDA 649 Query: 709 RDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSI-------------- 754 EE N+ MA SG++GS I Q+ + G + I Sbjct: 650 GTVTEEGLKDLNNATQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTK 709 Query: 755 ------IETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLV 808 + ++ GL ++F R+GL DTA+KTA +GY+ RRLV +D++ Sbjct: 710 DDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVM 769 Query: 809 VTEDDCGTHEGIMMTPVIEGGDVKE 833 D + + + G D + Sbjct: 770 AKYDGTVRNSLGDIVQFVYGEDGLD 794 Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 5/101 (4%) Query: 831 VKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDT 890 P +L R+ + + L Q L + + ++ Sbjct: 907 EVIPQVQDLLDRLIVVRGDDDLSREGQHNATILFKAQLRSRLAFKRLVMECSLNKLAFQH 966 Query: 891 DFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLT 931 G + R +N GE +GV+AAQSIGEP TQ+T Sbjct: 967 VLGEIESRFCR-----AAVNPGEMVGVLAAQSIGEPATQMT 1002 >UniRef50_C1EFA8 DNA-directed RNA polymerase (Fragment) n=2 Tax=Micromonas RepID=C1EFA8_9CHLO Length = 1616 Score = 575 bits (1481), Expect = e-162, Method: Composition-based stats. Identities = 172/862 (19%), Positives = 283/862 (32%), Gaps = 144/862 (16%) Query: 230 SGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPD 289 + + P + + V P LRP + F N +I N L L Sbjct: 325 NRSDPARFFMQTVLVTPCKLRPPSRMGDMMF-EHPQNTHLNAIIQANLTLAELFRKPPTV 383 Query: 290 IIVRN--------EKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQN 341 LQ V+ L+D+ R G + + ++ KQG FR N Sbjct: 384 PEPPEVRAQRAVRAWLTLQSGVNKLIDSSREG------GEAGGPGIRQQLEKKQGLFRMN 437 Query: 342 LLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMV 401 ++GKRV+Y+ RSVI PYLR + G+P A +L P + + + ++ ++ Sbjct: 438 MMGKRVNYAARSVIMPDPYLRTSEIGVPPVFAKKLTFPEHVTEHNVDLMRKLVENGPEIH 497 Query: 402 EREE--------------------------------------AVVWDILDEVIREHPVLL 423 + + + +L+ Sbjct: 498 PGANAIEDERGRVIHLDRFTAEKRAAIAKTLLAAPAPVSGSRPLAKKVYRHLRDGDVLLV 557 Query: 424 NRAPTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARA 482 NR PTLH+ GI A ++ G + I++H C YNADFDGD+M +H P A+ EA Sbjct: 558 NRQPTLHKPGIMAHTAKVLPGQRTIRMHYANCKTYNADFDGDEMNLHFPQDHLARAEAYE 617 Query: 483 LMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMV------LTGPKEAERL 536 ++ + P +G P+ QD V+ +T+ E M L + ++ Sbjct: 618 IVRADQQYTVPTDGSPLRGLIQDHVVAGVLLTKRDTFLDREEMRQALYSALVDYADEDKG 677 Query: 537 YRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIV---- 592 S I + G+ V L T GR + M +P + Sbjct: 678 GGSARGHSITVPPPAIVHPRELWTGKQVISAVLDHITHGRPDMTMSHGCKVPANYWGGEN 737 Query: 593 --------------NQALGKKAIS--KMLNTCYRILGLKPTVIFADQIMYTGFAYAARSG 636 + K +++ + G + + + G Sbjct: 738 SGEGEFILRKNYVCCGIVDKNTFGNKGLVHAVAELHGRVLAGDLLSVLSRLLTVWLQKWG 797 Query: 637 ASVGIDDMVIPEKKH------------------EIISEAEAEVAEIQEQFQ-SGLVTAGE 677 + G+DD+++ + +EA+ V + Q Q + + E Sbjct: 798 MTCGLDDLILTPEAEVGRAEELAKAAAACRSAAATFAEADENVPDAALQQQIAARLAERE 857 Query: 678 RYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQI 737 ++D+ R S A+ +K N + +M SGA+GS Sbjct: 858 GAEAILDM------RSSGALNKITSAAVTKCLPHGTKKPFPKNCLSLMTQSGAKGSMVNF 911 Query: 738 RQLAGMRGLM--------------AKPDGSIIE------TPITANFREGLNVLQYFISTH 777 Q+A G P + I F GL +YF Sbjct: 912 SQIAACLGQQELEGRRVPRMISGKTLPCFQPFDLSQRAGGYIEDRFFSGLRPQEYFFHCM 971 Query: 778 GARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRD 837 R+GL DTA+KTA SGYL R ++ + L V D + G D + + Sbjct: 972 AGREGLVDTAVKTARSGYLQRCMIKNLETLRVHYDHTVRDCDGSVVQFQYGEDGADVTKS 1031 Query: 838 RVLGRVTAEDVLKPGTADILVPRN-----------TLLHEQWCDLLEENSVDAVKVRSVV 886 A D LV N + + V+ Sbjct: 1032 SY-----ASDFQFLADNAELVKANLREAEAGRAEGKGASIKADLKSVKGVVERKPPEKKQ 1086 Query: 887 SCDTDFGVCAHCYGRDLARGH---IINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASR 943 S GV + R + + + GEA+G IA QS+GEP TQ+T+ TFH G Sbjct: 1087 SLVAQAGVTREEFKRLMNYRYLNQLAAPGEAVGCIAGQSVGEPSTQMTLNTFHFAGRGEA 1146 Query: 944 AAAESSIQVKNKGSIKLSNVKS 965 +++ + + Sbjct: 1147 NVTLGIPRLRELLMAAAKKLAT 1168 Score = 96.9 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 33/228 (14%), Positives = 69/228 (30%), Gaps = 45/228 (19%) Query: 1139 PRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNV 1198 P++ L + I+ + GI K L G DP Sbjct: 1434 PQLLVLELCEKVASETIVRSVPGIDKTYVVGK----LPSDDPTGKDPLRIQTDGVNFAAA 1489 Query: 1199 FEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVR 1258 + + + ++ + +L+ GV A + +V EV++V+ + G+ ++ +H Sbjct: 1490 WANDDLVDCTKLTT--NDVYAMLQTYGVEAARQTLVQEVRNVFGVYGIGVDARH------ 1541 Query: 1259 QMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATES 1318 + + + G + + S Sbjct: 1542 --------------------------LTLIADFMMQQGNYRPCSRAGI-------ETSPS 1568 Query: 1319 FISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYH 1366 S++ L +A + G D L +++GR+ GTG Sbjct: 1569 PFLKMSYETAAAFLVDATMKGAEDTLESPSSRIVMGRVPDLGTGSFGL 1616 Score = 90.3 bits (222), Expect = 5e-16, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 50/175 (28%), Gaps = 29/175 (16%) Query: 17 FDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYK 76 + + + R S + P + P +DGL+ + Sbjct: 1 IVSTSFSFYDAEEARRISVKRISNPVLFD-ALNNPVQDGLYDPALGPI------------ 47 Query: 77 RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIE 136 + C C + GHIELA P + ++ + + Sbjct: 48 ---DKKGSCATCRLSAMHCP---GHFGHIELAVPVYNPLTFGTVVRLLRGMC-------- 93 Query: 137 RVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKS 191 L+ + + + R+ L L+A E +K EAI L + Sbjct: 94 --LHCHRFKMGADRVAAYSRKMQLIRAGDLNAAAEISTVGVSKQVREAIAELEED 146 >UniRef50_O95602 DNA-directed RNA polymerase I subunit RPA1 n=40 Tax=Deuterostomia RepID=RPA1_HUMAN Length = 1720 Score = 571 bits (1472), Expect = e-161, Method: Composition-based stats. Identities = 202/1149 (17%), Positives = 365/1149 (31%), Gaps = 244/1149 (21%) Query: 7 FLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVK 66 + I + S + ++ S + P ++ P +GL+ + Sbjct: 2 LISKNMPWRRLQGISFGMYSAEELKKLSVKSITNPRYLDS-LGNPSANGLYDLALGPADS 60 Query: 67 DYECLCGKYKRLKHRGVI-------------------------CEKCGV--------EVT 93 C G + C C + + Sbjct: 61 KEVCSTCVQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLL 120 Query: 94 QTKVRRERMGHIELASPTAHIW--FLKSLPSRIG-----------------LLLDMPLRD 134 ++R +G ++ I FL+ P LL Sbjct: 121 LCQLRVLEVGALQAVYELERILNRFLEENPDPSASEIREELEQYTTEIVQNNLLGSQGAH 180 Query: 135 IERVLYFESYV-----VIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALL 189 ++ V +S + + + + F A + A Q Sbjct: 181 VKNVCESKSKLIALFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDS 240 Query: 190 KSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGN---------KPEWMILT 240 + + +E+ R L T++ L K ++ SG P L Sbjct: 241 EPLGIEEAQIGKRGYLTPTSAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLD 300 Query: 241 VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNE----- 295 L V P RP+ L F T+ + V+ +++LL L A + + E Sbjct: 301 FLVVPPSRYRPVSRLGDQMF-TNGQTVNLQAVMKDVVLIRKLLALMAQEQKLPEEVATPT 359 Query: 296 -------------------------------KRMLQEAVDALLDNGRRGRAITGSNKRPL 324 LQ V+ + D+ + Sbjct: 360 TDEEKDSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDK-----Y 414 Query: 325 KSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGK 384 + +++ K+G FR++++GKRVDY+ RSVI Y+ ++ G+P A +L P Sbjct: 415 PGIRQILEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTP 474 Query: 385 LELRGLAT------TIKAAKKMVEREEAVV------------------------------ 408 ++ L + MV E+ Sbjct: 475 WNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATGAPKPQG 534 Query: 409 -WDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAYNADFDGDQM 466 + V +LLNR PTLHR IQA ++ K ++LH C AYNADFDGD+M Sbjct: 535 TKIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEM 594 Query: 467 AVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVL-GLYYMTRDCVNAKGEGM 525 H P + + EA L + L P +G+P+ QD ++ G TR C + M Sbjct: 595 NAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYM 654 Query: 526 VLTGPKEAERLYRSGLASLHARVKVRITEYEKDANG--------------------ELVA 565 L +++ R L S + +K K ++ Sbjct: 655 ELVYRGLTDKVGRVKLLS-PSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKAKITG 713 Query: 566 KTSLKDTTVGRAILW---------MIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKP 616 K +K+T +I L ++++A + +++ CY I G + Sbjct: 714 KAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGET 773 Query: 617 TVIFADQIMYTGFAYAARS-GASVGIDDMVIPEK----KHEIISEAEAEV---------- 661 + + AY G ++G++D+++ K + II E+ Sbjct: 774 SGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPQAVRAALNL 833 Query: 662 ------AEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEK 715 E++ ++Q + +R +ID+ + + + + Sbjct: 834 PEAASYDEVRGKWQDAHLGKDQRDFNMIDL------KFKEEVNHYSNEINKACMPFGLHR 887 Query: 716 QVSFNSIYMMADSGARGSAAQIRQLAGMRGLM--------------AKPDGSIIE----- 756 Q NS+ MM SGA+GS Q++ + G + + P E Sbjct: 888 QFPENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRA 947 Query: 757 -TPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCG 815 +T F G+ ++F R+GL DTA+KT+ SGYL R ++ + LVV D Sbjct: 948 GGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTV 1007 Query: 816 THEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHE----QWCDL 871 + + G D + + + L +P L ++ + Sbjct: 1008 RDSDGSVVQFLYGEDGLDIPKTQFL---------QPKQFPFLASNYEVIMKSQHLHEVLS 1058 Query: 872 LEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIG----EPG 927 + R++ + G L+ I EA+ + +S PG Sbjct: 1059 RADPKKALHHFRAIKKWQSKHPNTLLRRGAFLSYSQKIQ--EAVKALKLESENRNGRSPG 1116 Query: 928 TQLTMRTFH 936 TQ +R ++ Sbjct: 1117 TQEMLRMWY 1125 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 35/208 (16%), Positives = 72/208 (34%), Gaps = 40/208 (19%) Query: 1165 FGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEG-ERVERGDVISDGPEAPHDILRL 1223 TKG R ++ + +E++ +N+ E + E D+ H I Sbjct: 1552 VIYATKGITRCLLNETTNNKNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIHAIANT 1611 Query: 1224 RGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYS 1283 G+ A R I E++DV+ + G+ ++ Sbjct: 1612 YGIEAALRVIEKEIKDVFAVYGIAVDP--------------------------------R 1639 Query: 1284 RVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDE 1343 + + + G + + S + +F+ + + L +A + G DE Sbjct: 1640 HLSLVADYMCFEGVYKPLNRFGIR-------SNSSPLQQMTFETSFQFLKQATMLGSHDE 1692 Query: 1344 LRGLKENVIVGRLIPAGTGYAYHQDRMR 1371 LR ++VG+++ GTG + +R Sbjct: 1693 LRSPSACLVVGKVVRGGTGLFELKQPLR 1720 Score = 84.5 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 5/108 (4%) Query: 903 LARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSN 962 + + GEA+G++AAQSIGEP TQ+T+ TFH G +++ + +N Sbjct: 1199 KWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASAN 1258 Query: 963 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQ 1010 +K+ + S + NT+ L K+ +V G VL K D ++ Sbjct: 1259 IKTPMMS-----VPVLNTKKALKRVKSLKKQLTRVCLGEVLQKIDVQE 1301 >UniRef50_A9CTM9 DNA-directed RNA polymerase n=1 Tax=Enterocytozoon bieneusi H348 RepID=A9CTM9_ENTBH Length = 1174 Score = 571 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 188/891 (21%), Positives = 330/891 (37%), Gaps = 111/891 (12%) Query: 12 TKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECL 71 T++ D IK L S I + + E+K + T KP G ++ + Sbjct: 2 KTTKKIDRIKFMLLSDSNINNLALTEIKHKTIHDIETRKPFSGGPLDLKLGVSTTE---- 57 Query: 72 CGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMP 131 CE C + G I L P HI K + +L+ Sbjct: 58 -----------TKCETCNQGLQDCP---GHWGKISLILPVFHIALFKEII----NILNSI 99 Query: 132 LRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKS 191 + +L + + + ++I ++ E ++ KS Sbjct: 100 CKKCSSLLIKNKHDIKSKVNIVDQCKKIKQCYNCNSFNGIVKKSNGFRIFHEFRKSNSKS 159 Query: 192 MDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRP 251 D+E + +ELN K + + L S P +++ L V P +RP Sbjct: 160 KDMEDN-KLFCDELNPLTVYNLFKNIKETDLLFL----SCKNPCNLLIKTLLVPPCCIRP 214 Query: 252 LVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGR 311 V +D F DL +IN NN ++ + A I + + LQ + +++ Sbjct: 215 SVDMDQDGFNEDDLTVKLSEIINCNNLIEENIKKGASLITLNEDWDYLQLQIALYINSDL 274 Query: 312 RGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKK 371 IT ++ +KS+ +KGKQGRFR NL GKRVD+SGR+VI+ P L + Q G+PK+ Sbjct: 275 PSIHITNNDN--IKSIIHRLKGKQGRFRMNLSGKRVDFSGRTVISPNPNLSIEQIGVPKE 332 Query: 372 MALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWD--------------------- 410 +ALE+ P L + ++ ++ + Sbjct: 333 IALEMTIPEKVTVFNKEELQILVNNGPNCIDGANYIIRNEVRNNETRTFKIFLKFAKNPK 392 Query: 411 ---------ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADF 461 + + VL NR P+LHR+ I A L + + Q + VC YNADF Sbjct: 393 VRELKVGDIVERHIKDGDIVLFNRQPSLHRMSIMAHRVKLHDNRTFQFNESVCNPYNADF 452 Query: 462 DGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAK 521 DGD+M +H+P T AQ EA LM NI + N EP+I P+QD + G+Y +T Sbjct: 453 DGDEMNIHLPQTKAAQAEAIELMSIKKNICTIKNNEPLISPTQDFITGMYLLTNKNKILT 512 Query: 522 GEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILW- 580 + + + + + T K G+ + L T+ Sbjct: 513 KTEFYKL---IGHIHHGKRIIIEPSIIIYKSTTVIKLFTGKQIVDYMLHSVTINLKTKNR 569 Query: 581 -----MIVPKGLPYSIVNQALGKKAIS--KMLNTCYRILGLKPTVIFADQIMYTGFAYAA 633 +I L +++++ ++ ++ + F + I Y Sbjct: 570 NKEDVIIKNSKLIQGTIDKSIIGAENKNSSLIYQLFKQ-SKVECIKFINNISKISIRYIM 628 Query: 634 RSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRV 693 G S+G+DD+ + ++ ++ NK + ++ Sbjct: 629 EYGFSIGLDDIYLS--------------NDLNRSKNKLVLNIINTINKECNDGTNRSELK 674 Query: 694 SKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGS 753 ++++ ++ + N+ +MA+ G++GS I Q+ G Sbjct: 675 KTSLLNKIRED---CGTMCLNTLNKNNAAVVMAECGSKGSKINISQMITCVGQQIVSGMR 731 Query: 754 -----------------------IIETPITANFREGLNVLQYFISTHGARKGLADTALKT 790 I + +F GL ++F R+GL DTA+KT Sbjct: 732 IQNGMYDKTIPHMKNIPNILDDVIYRGFVYNSFFTGLKAYEFFFHAISGREGLVDTAVKT 791 Query: 791 ANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLG 841 A++GY+ RRL+ ++L + D+ + + + G D K+PL D + Sbjct: 792 ADTGYMQRRLMKALENLSIKYDNTVRNNNNEIIQFLYGEDGKDPLYDETID 842 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 60/443 (13%), Positives = 133/443 (30%), Gaps = 66/443 (14%) Query: 935 FHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLID-----EFG 989 F + +++++ + G ++ +K++ N S K T RN ++I + Sbjct: 774 FFHAISGREGLVDTAVKTADTGYMQRRLMKALENLSIKYDNTVRNNNNEIIQFLYGEDGK 833 Query: 990 RTKESYKVPYGAVLAKGDGEQV--AGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTIT 1047 + G V +++ +G + I Sbjct: 834 DPLYDETIDATIKKFIEPGTAVGAIAAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIK 893 Query: 1048 RQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIV 1107 + + +S+ ++ ++ L+ + I + Sbjct: 894 EIINATSTISTPIISVKNVNLQDAYIIKQKLEKNVLKDIIKRIDIMYTHEKNIFNMIFTC 953 Query: 1108 QLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADL-------FEARRPKEPAILAEIS 1160 I + T D+ F + K + +IS Sbjct: 954 ISPLDNNILEK-LCIKPLSSKYNTMDLFNDNNYNYYQYKFKYNGFNIFKIKNTLLNTQIS 1012 Query: 1161 GIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDI 1220 G+ ++ I + + E + I++ +I Sbjct: 1013 GLT-------NTNKVFIKETNKDYELLISSSFGDLPYILGTEFINPYTTITN---NILEI 1062 Query: 1221 LRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQV 1280 G+ A I+NE++ G++IN +H+ ++ M K + Sbjct: 1063 ESTLGIEAARESIINEIEYTIGTHGIQINCRHLMLLADTMTIKGHV-------------- 1108 Query: 1281 EYSRVKIANRELEANGKVGATYSRDLLGITKASLAT-ESFISAASFQETTRVLTEAAVAG 1339 LGIT+ + S + ASF++T+ L +AA+ Sbjct: 1109 --------------------------LGITRFGMKYFNSTLMLASFEQTSDFLFQAAIEE 1142 Query: 1340 KRDELRGLKENVIVGRLIPAGTG 1362 + D + G+ +++I+G+ I GTG Sbjct: 1143 REDIVSGVSDSIILGKNISIGTG 1165 >UniRef50_B9ZVN9 DNA-directed RNA polymerase n=24 Tax=Eumetazoa RepID=B9ZVN9_HUMAN Length = 1659 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 202/1149 (17%), Positives = 365/1149 (31%), Gaps = 244/1149 (21%) Query: 7 FLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVK 66 + I + S + ++ S + P ++ P +GL+ + Sbjct: 2 LISKNMPWRRLQGISFGMYSAEELKKLSVKSITNPRYLDS-LGNPSANGLYDLALGPADS 60 Query: 67 DYECLCGKYKRLKHRGVI-------------------------CEKCGV--------EVT 93 C G + C C + + Sbjct: 61 KEVCSTCVQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLL 120 Query: 94 QTKVRRERMGHIELASPTAHIW--FLKSLPSRIG-----------------LLLDMPLRD 134 ++R +G ++ I FL+ P LL Sbjct: 121 LCQLRVLEVGALQAVYELERILNRFLEENPDPSASEIREELEQYTTEIVQNNLLGSQGAH 180 Query: 135 IERVLYFESYV-----VIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALL 189 ++ V +S + + + + F A + A Q Sbjct: 181 VKNVCESKSKLIALFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDS 240 Query: 190 KSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGN---------KPEWMILT 240 + + +E+ R L T++ L K ++ SG P L Sbjct: 241 EPLGIEEAQIGKRGYLTPTSAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLD 300 Query: 241 VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNE----- 295 L V P RP+ L F T+ + V+ +++LL L A + + E Sbjct: 301 FLVVPPSRYRPVSRLGDQMF-TNGQTVNLQAVMKDVVLIRKLLALMAQEQKLPEEVATPT 359 Query: 296 -------------------------------KRMLQEAVDALLDNGRRGRAITGSNKRPL 324 LQ V+ + D+ + Sbjct: 360 TDEEKDSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDK-----Y 414 Query: 325 KSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGK 384 + +++ K+G FR++++GKRVDY+ RSVI Y+ ++ G+P A +L P Sbjct: 415 PGIRQILEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTP 474 Query: 385 LELRGLAT------TIKAAKKMVEREEAVV------------------------------ 408 ++ L + MV E+ Sbjct: 475 WNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATGAPKPQG 534 Query: 409 -WDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAYNADFDGDQM 466 + V +LLNR PTLHR IQA ++ K ++LH C AYNADFDGD+M Sbjct: 535 TKIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEM 594 Query: 467 AVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVL-GLYYMTRDCVNAKGEGM 525 H P + + EA L + L P +G+P+ QD ++ G TR C + M Sbjct: 595 NAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYM 654 Query: 526 VLTGPKEAERLYRSGLASLHARVKVRITEYEKDANG--------------------ELVA 565 L +++ R L S + +K K ++ Sbjct: 655 ELVYRGLTDKVGRVKLLS-PSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKAKITG 713 Query: 566 KTSLKDTTVGRAILW---------MIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKP 616 K +K+T +I L ++++A + +++ CY I G + Sbjct: 714 KAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGET 773 Query: 617 TVIFADQIMYTGFAYAARS-GASVGIDDMVIPEK----KHEIISEAEAEV---------- 661 + + AY G ++G++D+++ K + II E+ Sbjct: 774 SGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPQAVRAALNL 833 Query: 662 ------AEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEK 715 E++ ++Q + +R +ID+ + + + + Sbjct: 834 PEAASYDEVRGKWQDAHLGKDQRDFNMIDL------KFKEEVNHYSNEINKACMPFGLHR 887 Query: 716 QVSFNSIYMMADSGARGSAAQIRQLAGMRGLM--------------AKPDGSIIE----- 756 Q NS+ MM SGA+GS Q++ + G + + P E Sbjct: 888 QFPENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRA 947 Query: 757 -TPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCG 815 +T F G+ ++F R+GL DTA+KT+ SGYL R ++ + LVV D Sbjct: 948 GGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTV 1007 Query: 816 THEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHE----QWCDL 871 + + G D + + + L +P L ++ + Sbjct: 1008 RDSDGSVVQFLYGEDGLDIPKTQFL---------QPKQFPFLASNYEVIMKSQHLHEVLS 1058 Query: 872 LEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIG----EPG 927 + R++ + G L+ I EA+ + +S PG Sbjct: 1059 RADPKKALHHFRAIKKWQSKHPNTLLRRGAFLSYSQKIQ--EAVKALKLESENRNGRSPG 1116 Query: 928 TQLTMRTFH 936 TQ +R ++ Sbjct: 1117 TQEMLRMWY 1125 Score = 158 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 82/511 (16%), Positives = 167/511 (32%), Gaps = 92/511 (18%) Query: 903 LARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSN 962 + + GEA+G++AAQSIGEP TQ+T+ TFH G +++ + +N Sbjct: 1199 KWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASAN 1258 Query: 963 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDP 1022 +K+ + S + NT+ L K+ +V G VL +++ E+ + Sbjct: 1259 IKTPMMS-----VPVLNTKKALKRVKSLKKQLTRVCLGEVL-----QKIDVQESFCMEEK 1308 Query: 1023 HTMPVITEVSGFV---RFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALK 1079 + ++ + + ++++S ++ + Sbjct: 1309 QNKFQVYQLRFQFLPHAYYQQEKCLRPEDILRFMETRFFKLLMESIKKKNNKASAFRNVN 1368 Query: 1080 IVDAQGNDVLIPGTDMPAQYFLPGKAIV--QLEDGVQISSGDTLARIPQESGGTKDITGG 1137 A D+ G ++ G + D GD A + ++ Sbjct: 1369 TRRATQRDLDNAGELGRSRGEQEGDEEEEGHIVDAEA-EEGDADASDAKRKEKQEEEVDY 1427 Query: 1138 L-------------------PRVADLFEARRPKE-------PAILAEISGIVS------- 1164 R AR+ +E L +I+ +S Sbjct: 1428 ESEEEEEREGEENDDEDMQEERNPHREGARKTQEQDEEVTVKLPLMKINFDMSSLVVSLA 1487 Query: 1165 ---FGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEG-ERVERGDVISDGPEAPHDI 1220 TKG R ++ + +E++ +N+ E + E D+ H I Sbjct: 1488 HGAVIYATKGITRCLLNETTNNKNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIHAI 1547 Query: 1221 LRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQV 1280 G+ A R I E++DV+ + G+ ++ Sbjct: 1548 ANTYGIEAALRVIEKEIKDVFAVYGIAVDP------------------------------ 1577 Query: 1281 EYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGK 1340 + + + G + + S + +F+ + + L +A + G Sbjct: 1578 --RHLSLVADYMCFEGVYKPLNRFGIR-------SNSSPLQQMTFETSFQFLKQATMLGS 1628 Query: 1341 RDELRGLKENVIVGRLIPAGTGYAYHQDRMR 1371 DELR ++VG+++ GTG + +R Sbjct: 1629 HDELRSPSACLVVGKVVRGGTGLFELKQPLR 1659 >UniRef50_Q9MUS6 DNA-directed RNA polymerase subunit beta' n=2 Tax=Viridiplantae RepID=RPOC1_MESVI Length = 668 Score = 569 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 318/657 (48%), Positives = 429/657 (65%), Gaps = 56/657 (8%) Query: 11 QTKTEEFDAIKIALASPDMIRSWS---------FGEVKKPETINYRTFKPERDGLFCARI 61 K F+ I+I LASP+ I W GEV + ETINYRT KPE DGLFC RI Sbjct: 3 PKKLVHFEYIQINLASPERILQWGQRTLSNGEIVGEVTRSETINYRTLKPEMDGLFCERI 62 Query: 62 FGPVKDYECLCGKYKRLKHR-----GVICEKCGVEVTQTKVRRERMGHIELASPTAHIWF 116 FGPVKD+EC CG+YKR+++ ++CE+CGVEV ++ VRR RMGHI+LASP H+W+ Sbjct: 63 FGPVKDWECHCGRYKRVRYNKNSEISIVCERCGVEVIESGVRRHRMGHIKLASPVTHVWY 122 Query: 117 LKSLPSRIGLLLDMPLRDIERVLYFESY--VVIEGGMTNLERQQIL-TEEQYLDALEEFG 173 LK +PS I ++L MP +D+E ++Y+ + + + L + LD L Sbjct: 123 LKGIPSYISVILGMPRKDVENIVYYNNNDSISFKNISQFLTENRFFSNSTDILDDLLNIK 182 Query: 174 DEFDAKMGAEAIQALLKSMDLEQECEQLREEL---------------------------- 205 ++ + G EAI +LK+ DL+ +++RE+L Sbjct: 183 EKEEEISGGEAIYKMLKNFDLKATAQKIREDLAENEAAWTQSSFFNGEDSDWVLDENQWN 242 Query: 206 --------NETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDG 257 E KR KL KR++++ F+ +G KPEWM+L++LPVLPP+LRP+V LDG Sbjct: 243 KKNQDWQIEEERRNKKRNKLIKRLRIINHFIATGAKPEWMVLSILPVLPPELRPMVQLDG 302 Query: 258 GRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAIT 317 GRFATSDLNDLYRRVINRNNRL +L ++ AP+I+VR+EKRMLQE+VDAL+DNG+RG+A+ Sbjct: 303 GRFATSDLNDLYRRVINRNNRLAKLNNMLAPEIVVRSEKRMLQESVDALIDNGKRGKALV 362 Query: 318 GSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELF 377 G+NK PLKSL+D+IKGKQGRFRQNLLGKRVDYSGRSVI VGP L+LHQCGLPK+MA+ELF Sbjct: 363 GNNKIPLKSLSDIIKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKLHQCGLPKEMAIELF 422 Query: 378 KPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAF 437 +PF+ L GLA IK AKK+++ + ++W+IL++VI+ HPVLLNRAPTLHRLGIQAF Sbjct: 423 QPFVIHTLINEGLANNIKGAKKIIQNSDPILWEILNQVIQGHPVLLNRAPTLHRLGIQAF 482 Query: 438 EPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGE 497 EP+L+EG+AIQLHPLVC A+NADFDGDQMAVH+PL+LEAQ EAR LM++++N+LSPA G Sbjct: 483 EPILVEGRAIQLHPLVCPAFNADFDGDQMAVHIPLSLEAQTEARLLMLASSNLLSPATGL 542 Query: 498 PIIVPSQDVVLGLYYMTRDCVNAKG-EGMVLTGPKEAERLYRSGLASLHARVKVRITEYE 556 PII PSQD+VLG YY+T + + +G + + ++ Y +LH V VR + Sbjct: 543 PIISPSQDMVLGCYYLTTEDIRLRGTKSHYFSSLEQVIMAYDQKKINLHTIVWVRFSGII 602 Query: 557 KDANGELVAKTSLKDT--TVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRI 611 + D+ V + K ++++Q + + N + Sbjct: 603 DSKYIKQNPIEIRVDSLGFVSYIYKNYQMRKDFKNNLISQYIRTTPGRILFNQVIQN 659 >UniRef50_Q8LLJ6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ochromonas danica RepID=Q8LLJ6_OCHDN Length = 1064 Score = 564 bits (1454), Expect = e-159, Method: Composition-based stats. Identities = 199/1073 (18%), Positives = 379/1073 (35%), Gaps = 163/1073 (15%) Query: 97 VRRERMGHIELASPTAHIWFLKSLPSRIGLLL---------DMPLRDIERVLYFESYVVI 147 GHIEL H F+ + + + + +D E + + Sbjct: 1 ECPGHFGHIELHRAVFHCGFIDEVVRILRCVCFHCSRLLLDEKIPKDREVMQITDPETRF 60 Query: 148 EGGMTNLERQQILTEEQYLDALEEFGDE-----------FDAKMGAEAI----------- 185 R + E + + F DE D GA+A Sbjct: 61 RKIHDRCNRTMVKCEVADSEQMTRFLDEANPDASEARNFIDDIFGADAFQSTQASSSSHN 120 Query: 186 --QALLKSMDLEQECEQL-------------------REELNETNSETKRKKLTKRIKLL 224 + ++ + + E L + EL+ T + +K++ + Sbjct: 121 SKRPPCGNVQPKFKREGLTIRITFSSEDSDAPTLGPRQRELSATEAYEVLRKISDEDVEM 180 Query: 225 EAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLD 284 F ++P+WM++TVLPV P +G + DL ++ N LK + Sbjct: 181 LGFNPKYSRPDWMVVTVLPVP-PPHVRPTVTEGDVQSQDDLTYQLTNIVKTNLILKDTIM 239 Query: 285 LAAPDIIVRNEKRMLQEAVDALLDNGRRGRA-ITGSNKRPLKSLADMIKGKQGRFRQNLL 343 +I++ ++ LQ V+AL DN R +T RPLK++ +KGK+GR R NL+ Sbjct: 240 KGGSKLIIQEYEKALQAHVNALFDNERDDNPRVTQKTGRPLKTVRQRLKGKEGRLRGNLM 299 Query: 344 GKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFI-YGKLELRGLATTI------KA 396 GKRVD+S R+VIT P L + Q G+P+ +L + + L + Sbjct: 300 GKRVDFSARTVITADPNLSIDQVGVPRLYCFDLDCSCNSDNHINIDELRDMVARGPLEWP 359 Query: 397 AKKMVEREEAVV-----------------WDILDEVIREHPVLLNRAPTLHRLGIQAFEP 439 + + R + V W + + + VL NR P+LH++ Sbjct: 360 GARYIVRADGVRIDLRKVRSSNDVQLEYGWTVERHLRDDDIVLFNRQPSLHKMSTMGHRA 419 Query: 440 VLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPI 499 +++ +L+ V YNADFDGD+M +HVP +L A+ +A+ LMM NI++P + + Sbjct: 420 KVLDWSTFRLNLSVTTPYNADFDGDEMNLHVPQSLTARADAQELMMVPRNIVTPQSNRNV 479 Query: 500 IVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDA 559 + QD +LG+ MT+ V E ++ T G A +K + K Sbjct: 480 MGIVQDALLGVTRMTKRDVFVDKEVVMNTM---VWLPTWDGNIPAPAILKPKPLWTGKQL 536 Query: 560 NGELVAKTSLKDTTVGRAILW-------------MIVPKGLPYSIVNQALGKKAISKMLN 606 + K + + + +I L IV++ + + +++ Sbjct: 537 FSMICPKINYRGRSKNHVEDKNVTDPFNYLDSEVLIHSGNLLQGIVDKNIVGASGGSIVH 596 Query: 607 TCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIIS----EAEAEVA 662 C+ G + T F +QI + + SVG+ D V I EA+ +V Sbjct: 597 ICWLSKGWEETRDFMNQIQAVVNYWMVNTSYSVGVSDTVADATTINAIQSTLNEAKEKVK 656 Query: 663 EIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSI 722 I + Q G + + N+ ++ A + N+I Sbjct: 657 AIMTKAQEGSLKMMPGKPLMESFEMXINEVLNDA--------RSTVGKAAQRSLKERNAI 708 Query: 723 YMMADSGARGSAAQIRQLAGMRGLMAKPDGSI--------------------IETPITAN 762 +G++GS I Q+ G I + + Sbjct: 709 KGTVMAGSKGSELNISQIIACVGQQNVQGKRIAYGFNQRTLPHFAKDDLGMESRGFVENS 768 Query: 763 FREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMM 822 + GL+ ++F G R+G DTA+KTA +GY+ RRLV + ++ D + + Sbjct: 769 YLRGLSPQEFFFHAMGGREGCIDTAVKTAETGYIQRRLVKAMETVMAQYDTTLRNSRGCV 828 Query: 823 TPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRN-TLLHEQWCDLLEENSVDAVK 881 + G D + R+ +V + + T + + + + Sbjct: 829 IQFLYGEDGMD--AQRIEKQVFDSYTFTASKFREVYYLDVTSEYLGRLSYINTATNERAL 886 Query: 882 VRSVVSCDTDFGVCAHCYGRDLARGHII----NKGEAIGVIAAQSIGEPGT--------- 928 + + D ++ + E +G + S +P T Sbjct: 887 YMHPLVIEKCRNDPELRMLLDEEYEQLLKDRGSLREIMGCRGSGSESDPNTYLPVNIDRL 946 Query: 929 ------QLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSG-------KLVI 975 Q + R ++ ++ + + + + + ++++ Sbjct: 947 IWNAQRQFRININEPCPMHPRIVLDAVKKLCQEDLLIVRGSDPISREAQSNATLLFQILV 1006 Query: 976 TSRNTELKLIDEFGRTKESYKVPYGAVL------AKGDGEQ--VAGGETVANW 1020 S+ +++ ++ TK++ + GA++ GE V +++ Sbjct: 1007 RSKLATKRVLRDYRLTKDALEWVVGAIVSDFRASVVHPGEMAGVLAAQSIGEP 1059 Score = 45.6 bits (106), Expect = 0.015, Method: Composition-based stats. Identities = 16/30 (53%), Positives = 21/30 (70%) Query: 902 DLARGHIINKGEAIGVIAAQSIGEPGTQLT 931 R +++ GE GV+AAQSIGEP TQ+T Sbjct: 1035 SDFRASVVHPGEMAGVLAAQSIGEPATQMT 1064 >UniRef50_A8Q5K0 DNA-directed RNA polymerase n=2 Tax=Eukaryota RepID=A8Q5K0_BRUMA Length = 1687 Score = 564 bits (1453), Expect = e-159, Method: Composition-based stats. Identities = 210/1364 (15%), Positives = 414/1364 (30%), Gaps = 253/1364 (18%) Query: 217 LTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRN 276 L K + ++ + + + V P RP+ G +F + + R+++ + Sbjct: 345 LKKVFPVFDSEDDRHCPLDVLFCEAVLVPPTKYRPVRIFKGDKF-ENPQSVNLRKLLEAS 403 Query: 277 NRLKRLLDLAAPDI-------------------IVRNEKRMLQEAVDALLDNGRRGRAIT 317 ++ + + + + N +LQ+ + A+ D Sbjct: 404 ETIRAIRLALSGNNEKAVLNLVSENVLGQTMQAKMHNAYLILQQRMGAIFDQDLDKWT-- 461 Query: 318 GSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELF 377 + + + +++ KQG FR N++GKRV+++ RSVIT PYL + + G+P+ A +L Sbjct: 462 -DVRIQVPGIKQILEKKQGLFRMNMMGKRVNFACRSVITPDPYLDIDEIGIPELFAKKLT 520 Query: 378 KPFIYGKLELRGLATTIKAAKKMVEREEAVVWD--------------------------- 410 + L L IK E +++ Sbjct: 521 VTESVNAMNLVRLRKMIKNGPNFHPGYELLLFKNSGSANFIQKPGRYTQVLSVNKRNERD 580 Query: 411 -------------------ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLI-EGKAIQLH 450 +L + + VL+NR P+LH+ + ++ +A++++ Sbjct: 581 AAAKRLQPGSSSHLGYPIQVLRHLDKGDLVLMNRQPSLHKPSMMGHRARVLXSQRALRMN 640 Query: 451 PLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGL 510 C AYNADFDGD+M H AQ E + V G+ Sbjct: 641 YAPCKAYNADFDGDEMNGHFVQNRIAQTELAEI-----------------------VSGV 677 Query: 511 YYMTRDCVNAKGEGMVLTGPKEAE---------------RLYRSGLASLHARVKVRITEY 555 R K + M L AE + SG + ++ I + Sbjct: 678 LLTIRGRFFNKEDFMHLVLSAFAETTQRLVIPPPAMLKPEVLWSGKQIISTVLRNCIPLH 737 Query: 556 EKDANGELVAKTSLKDTT---VGRAILWMIVPK------GLPYSIVNQALGKKAISKMLN 606 + N AKT L M + L ++++ +++ Sbjct: 738 KPLLNIRSKAKTPLSCWKVEDHSAPKFNMSESEVVFRQAELLVGVLDKQHYGSTQYGLIH 797 Query: 607 TCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVI----PEKKHEIISEAEAEVA 662 C+ + G + + G ++G+ D++I +++ + I Sbjct: 798 CCWDLYGHQFATRILSCFSRLFTTHLQYHGFTLGVADILIRKEADKQRKKEIKALRKCGD 857 Query: 663 EIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTE-----TVINRDGQEEKQV 717 + + + A E K + A N + + + L + + K Sbjct: 858 TVVRECFNLDEDADESEIKHVMASAYCNPKGEQNYIQQLDYKMKETLNRVCMPAGLIKLF 917 Query: 718 SFNSIYMMADSGARGSAAQIRQLAGMRGLM--------------AKPDGSIIE------T 757 N++ +M SGA+G+ Q++ G + P + Sbjct: 918 PQNALQLMILSGAKGTMVNSVQISCELGQIELEGHRPPMTNAGRTLPSFRSFDTSPRAGG 977 Query: 758 PITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTH 817 + F G+N + F T R+GL DTA+KT+ SGYL R +V + LV D Sbjct: 978 FVDQRFLTGINPQELFFHTMAGREGLIDTAVKTSRSGYLQRCIVKHLEGLVAQYDSTVRD 1037 Query: 818 EGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGT-------------ADILVPRNTLL 864 + G D + + + + + D + + Sbjct: 1038 HDGSIIQFRYGEDGMDVCKSTFMDSKQFDFLADNMQVLRSRVLPVDYNEDDWDLKKCEKA 1097 Query: 865 HEQWCDLLEENSVDAVKVRS-------------VVSCDTDFGVCAHCYGRDLARGH---- 907 +++ + + KV + R Sbjct: 1098 YKKIKKWRRKYGIHKRKVYTSGYVEFSKEYRGTPKEKVQKMWFELTDEERYEYHSKAGKA 1157 Query: 908 -------IINKGEAIGV------------IAAQSIGEPGTQLTMRTFHIGGAASRAAAES 948 +N ++G I +SIGEP TQ+T+ TFH G Sbjct: 1158 CPTAVDEKMNPNRSLGALPQKLLDDIDDYICRKSIGEPSTQMTLNTFHFAGRGEMNVTLG 1217 Query: 949 SIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDG 1008 +++ +++K+ S ++ I + ++ Y + Sbjct: 1218 IPRLREILMTASNDIKT---PSTEIHIKPGTSSERIETIKRELGRIYLKELIKKFTIDER 1274 Query: 1009 EQVAGGETVANWDPHTMPVI--TEVSGFVRFTDMIDGQTITRQTDE-----LTGLSSLVV 1061 + G ET +D + + + + R+ + ++ + Sbjct: 1275 INLDGKETWRCYDLRIELLRAKERIECIRHISRHRILTEVERRFVKAIGKRISDRCREMT 1334 Query: 1062 LDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTL 1121 A + K + D + D + G I DG++I Sbjct: 1335 DHQALQHKKLKLNNLTVGTGDEKETSKPKKQDDELSSDEEDGGGIDLDADGMRILKRHLD 1394 Query: 1122 ARIPQESGGTKD-ITGGLPRVADLFEARRPKEPAILAE-------------ISGIVSFGK 1167 E + I +V D F + AE + + + Sbjct: 1395 DAAEYEGEEDEQRIVLSQQKVEDTFMEISTESEGENAETTVERDADANDSSLDAQLRSQE 1454 Query: 1168 ETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLR--- 1224 + + VIT Y+ + R V + + G ++ Sbjct: 1455 AEASRIQSVITSSPLVKDYKFDVKSNRWCTVTFQLPLSTKTKLDVGALVERELENFLVWE 1514 Query: 1225 --GVHAVTRYIVNEVQDVYR---LQGVKIN--DKHIEVI---------VRQMLRKATIVN 1268 G+ N D Y+ QG+ + KH +V+ + M I Sbjct: 1515 TPGIEKCIVRCENRGDDQYQVLATQGINVQALMKHSDVLDVNTLYSNDLNMMCNNYGIEA 1574 Query: 1269 AGSSDFL--------EGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFI 1320 G + G V + + +A + G++ A + S + Sbjct: 1575 CGRALVKEIIRVFTPYGIDVNWRHLTLAADYMTFTGRIQPFSRG-------AMSLSASPL 1627 Query: 1321 SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 +F+ T + +A + G D L +++G L+ GTG Sbjct: 1628 QRMTFETTIAFMRDALINGDDDHLMSPSSRLVIGGLLRGGTGIF 1671 Score = 91.5 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 39/237 (16%), Positives = 77/237 (32%), Gaps = 29/237 (12%) Query: 1 MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60 M D+ F + D +++ P I S + + + + P GL+ R Sbjct: 1 MADI--FGPGHEPYKILDRLQLRCYLPHEIERISVLRITETKAFD-EIGHPISGGLYDLR 57 Query: 61 IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120 + GP++ ++ CE C + T MGHI+L P + Sbjct: 58 L-GPLETFD--------------TCETCHQQGTYCP---GHMGHIQLDIPAFNPLLFGFT 99 Query: 121 PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKM 180 S L++ R+ S + + + L + + D F A+ Sbjct: 100 FS----LMNGTCVQCHRLTCNSSGLPAKLLLAQLRALDLGLVSVAQELDGFIKDHFSAES 155 Query: 181 GAEAIQ----ALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNK 233 G + L ++ +E + ++ NE K + +K +S + Sbjct: 156 GTGTLDGNAPILSDEINACKELDNFLDKFNEQVGSGIDKNRSFPVKNALELRRSLIR 212 >UniRef50_Q4PB85 DNA-directed RNA polymerase n=3 Tax=Basidiomycota RepID=Q4PB85_USTMA Length = 1795 Score = 561 bits (1446), Expect = e-158, Method: Composition-based stats. Identities = 211/1405 (15%), Positives = 439/1405 (31%), Gaps = 278/1405 (19%) Query: 229 QSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLL----- 283 +G + ++VL V P RP + F + N+L V+ ++ + Sbjct: 382 PNGASADSFFVSVLAVPPTRFRPASIMGDMTF-ENSQNELLTNVLKTTFSIRDQITELTR 440 Query: 284 ---DLAAPDI-------------------------IVRNEKRMLQEAVDALLDNGRRGRA 315 P++ V N LQ V++ +D + Sbjct: 441 LVSKKDFPELGPDASEADYRAAEAQLIKGREDTRRKVLNSMMQLQVDVNSFIDASKNPMP 500 Query: 316 ITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALE 375 + + P + ++ K+G FR++++GKRV+++ RSVI+ + ++ G+P A + Sbjct: 501 LRQ-GQLPPPGVKQGLEKKEGLFRKHMMGKRVNFAARSVISPDVNIETNEIGVPPVFARK 559 Query: 376 LFKPFIYGKLELRGLATTIKAAKKMVEREEAVV--------------------------- 408 L P ++ + + A+ Sbjct: 560 LTYPEPVTVHNVQLMRQLVINGPFKYPGAVAIRSEDGTETQLDKLSVEERTALANQLLTP 619 Query: 409 -------------------------WDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIE 443 +L + +LLNR PTLHR + A + ++ Sbjct: 620 QEHSSKQARGTFAGLGSSTRTPIANKQVLRHLRDGDILLLNRQPTLHRPSMMAHKARVLV 679 Query: 444 G-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVP 502 G K I++H C +YNADFDGD+M +H P + A+ E + + N L+P +G P+ Sbjct: 680 GEKTIRMHYANCNSYNADFDGDEMNMHFPQSQAARAECYYVANTDNQYLTPTSGNPLRGL 739 Query: 503 SQDVVL-GLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANG 561 QD V+ G++ +++ + + E + +G V + + E G Sbjct: 740 IQDHVVAGVWMTSKNTLYTRAEYQQMLYGALRPEGKYTG-GGRVLTVPPALLKPEPLWTG 798 Query: 562 ELVAKTSLKDTTVGRAIL-----------------------WMIVPKGLPYSIVNQALGK 598 + V T L + +A +I L ++++A Sbjct: 799 KQVISTVLLNLKPAKADGLNLTSKAKVAGRMWGKDHASEEKVIIEDGELLQGVLDKAAFG 858 Query: 599 KAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHE----II 654 + +++ + I G + + + + S +DD+++ ++ E + Sbjct: 859 ASSFGLVHAIFEIYGSETAGKLLSILSRLFTKFLQTNAFSCRMDDLLLSKEGDEWRRTTL 918 Query: 655 SEAEAEVAEIQEQFQ----SGLVTAGERYNKVIDIWAAANDR---------VSKAMMDNL 701 A+ + + + N I + D + + Sbjct: 919 DAAKNQGKGVAMKTVGLEGEDEKNPDTDRNLRIRLEEVLRDDDKLAVLDGEMMNSSNALT 978 Query: 702 QTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM-------------- 747 K+ N++ MM SGA+GSA + Q++ + G Sbjct: 979 SKIIESCLPAGLYKKFPENNMQMMTGSGAKGSAVNVSQISCLLGQQALEGRRVPLMVSGK 1038 Query: 748 AKPDGSIIE------TPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLV 801 + P E ++ F G+ +YF R+GL DTA+KT+ SGYL R L+ Sbjct: 1039 SLPSFRPFETSARAGGFVSGRFLTGIRPQEYFFHCMAGREGLIDTAVKTSRSGYLQRCLI 1098 Query: 802 DVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRV-----TAEDVLKPGTADI 856 + + + D+ + + G D + + + +G+ E+ K Sbjct: 1099 KHLEGVHIQYDNTVRNADGSVLQFNYGEDALDTTKSKYIGQFDFTAANFENYNKRYDPKQ 1158 Query: 857 LVP-RNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKG--- 912 L L + + V SV T FG + Y +++ N Sbjct: 1159 LGEVVEAELAAEHMKKALKKPHKYDPVLSVYLPSTHFGSMSEKYAKEIEAYIEKNPSKLL 1218 Query: 913 ------------------------------EAIGVIA----------------AQSIG-- 924 E +GV A +++G Sbjct: 1219 ADKKKKSKKRKSEASAPDEATAVEKLRFAKEKLGVEAFRAMCKVLYHRGLVDPGEAVGLL 1278 Query: 925 ------EPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKS------------- 965 EP TQ+T+ TFH G + +++ ++K+ Sbjct: 1279 AAQGVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTASQHIKTPIMRLPVLDGITA 1338 Query: 966 ----VVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWD 1021 G ++ S+ + ++ E K + E ++ Sbjct: 1339 DQIKTFCKDGSRLVLSQVIDEAIVTEKISPKSEGTGFHRQKTYTVRLNFYPADECKEEYN 1398 Query: 1022 PHTMPVITEVSGFV--RFTDMIDGQTITRQTDELTGLSS----LVVLDSAERTAGGKDLR 1075 T ++ + + I+ + ++ + ++ V D+A + Sbjct: 1399 CTTAHILHGLQETFAPNLENSINNEMRKQKREHALQAAAIGKGRVFSDNAPAGDNADEDG 1458 Query: 1076 PALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDIT 1135 V + + + A E G +++ Sbjct: 1459 ERANGVVGRSQTRSRGNEADSDDEEDASSDAGDGDADDAKRKQKSAAHASYEEGDDEEM- 1517 Query: 1136 GGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPY----EEMIP 1191 G P + EA + + + ++ + Sbjct: 1518 -GGPSTTEDIEAAFSNGGSKKRSSDVMDVDSDSESDSSEDGSINEEWAEQTCALERALQE 1576 Query: 1192 KWRQLNVFEGERVERGDVISDGPEA--PHDILRLRGVHAV-TRYIVNEVQDVYRL----- 1243 + +N F + V+ D +L + V V + +++E+ ++ R+ Sbjct: 1577 NSKYINAFRFDDVKARWAEFDLTLNTQSQKLLLINIVERVCRQSVIHEIPNIARVMKPPP 1636 Query: 1244 ----QGVK-----INDKHI----EVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANR 1290 +GV IN + + ++ L + G+ G + + + R Sbjct: 1637 KAGEEGVSLTAEGINFRDLWDFGFGVID--LDNLYTNDIGAVLHTYGVEAARAAIVAEMR 1694 Query: 1291 ELEANGKVGATYSRDLL------------GITKASL-ATESFISAASFQETTRVLTEAAV 1337 + + + L ++ + + S + ASF+ T + +A+ Sbjct: 1695 GIFDTYGIAVSPRHLFLIADYQTAAGGFRPFNRSGISESSSTLLKASFEMTMAFIGGSAL 1754 Query: 1338 AGKRDELRGLKENVIVGRLIPAGTG 1362 G+ D L+ ++VGR + +GTG Sbjct: 1755 HGEVDMLKTPSSKLVVGRPVNSGTG 1779 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 54/157 (34%), Gaps = 23/157 (14%) Query: 14 TEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCG 73 T + + + + IR S ++ P ++ T P GL+ + GP++ Sbjct: 8 TSTISSASFSFLTAEDIRRISVKQIINPVLLD-TTNHPNAGGLYDPAL-GPMR------- 58 Query: 74 KYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLR 133 IC C + + GHIEL SP H F+ + + LL Sbjct: 59 -------PNDICSTCHLN---SYQCPGHFGHIELPSPVFHPLFMGN----MFNLLRGTCF 104 Query: 134 DIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALE 170 R + G L ++ + + ++A E Sbjct: 105 YCHRFRLPLVVLTKVIGRLRLLEYGLVDDAENIEAEE 141 >UniRef50_A9BK83 DNA-directed RNA polymerase n=1 Tax=Cryptophyta RepID=A9BK83_9CRYP Length = 1323 Score = 559 bits (1439), Expect = e-157, Method: Composition-based stats. Identities = 233/1361 (17%), Positives = 451/1361 (33%), Gaps = 207/1361 (15%) Query: 7 FLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVK 66 + + + ++ + AS S S ++ + + +P + GL + + Sbjct: 2 ESYRKNFSNQLTGLEFSNASFFKNLSISQIQITNKFLYSNFSSQPCQGGLLDSTLGA--- 58 Query: 67 DYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGL 126 ++ IC+ C + G+I+L P +I +LK++ + + Sbjct: 59 -------------NKKNICKSCKKNQSYCS---GHFGYIKLFLPVLNIGYLKAIQLILSM 102 Query: 127 LLDMPLRDIERVLYFESY-------VVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAK 179 + R + +Y + +G L+ +++E F + Sbjct: 103 ICKSCSRVLVHPGKRRNYFFKVIRKIKKKGEGQKLDYLSEISQECRQIDYCPFCWSKNGS 162 Query: 180 MGAEAIQALLKSMDLEQECEQLR------------EELNETNSETKRKKLTKRIKLLEAF 227 + + ++ + + + L+ +K+++ L F Sbjct: 163 IRKFGTLGFVHDFKFQKNKKNFQNFNCSASLVFTEKILDPLGIFKIFQKISREDWELLDF 222 Query: 228 VQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAA 287 P +IL LPV P +RP V + DL + N +LK Sbjct: 223 DSIETHPTHLILYYLPVPPLGVRPTVFISETMTNEDDLTMKLTEIQFLNIQLKINFQTGI 282 Query: 288 PDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRV 347 P + +++ +LQ L++ S K+ KSL + +KGK GRFR NL GKRV Sbjct: 283 PFLAIKDTWSILQIECGKYLNSEA---FNLESGKQKFKSLFNRLKGKNGRFRGNLSGKRV 339 Query: 348 DYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI------------- 394 ++SGR+VI+ P L L+ GLP +A +L P K + L T+ Sbjct: 340 NFSGRTVISPDPNLPLNFLGLPIILATKLTFPERVNKFNIERLQRTVLRGATRFPGANFL 399 Query: 395 ---KAAKKMVER-----EEAVV---WDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIE 443 K KK +E E + + I + +L NR P+LHR+ I A +I Sbjct: 400 IDLKNNKKHIENLSKKKEHLEIKSGYKIERHLKNNDIILFNRQPSLHRISIMAHRTKIIS 459 Query: 444 GKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPS 503 GK ++++ +C YNADFDGD+M +H+P T +A+ E+ +L+ NI SP GE +I + Sbjct: 460 GKTLKINECICKPYNADFDGDEMNIHIPQTQKARAESISLLNLVKNINSPGTGESMIAAT 519 Query: 504 QDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGEL 563 QD + + +T + + + L G + + + G+ Sbjct: 520 QDFLSASFVLTSKNQFFSHDQI-----GKILHLLELGNIEK-ENFIPALLKPFQMWTGKQ 573 Query: 564 VAKTSLKDTTVGRAILWMIVPKGLPY-SIVNQALGKKAISKML-----NTCYRILG---- 613 + + + + N +LGKK S L ++ Sbjct: 574 IFSLIVFSKKKKDKNKKKNFQGSIFHLMEKNYSLGKKQCSPFLCPFDGWILFKNRNLLAG 633 Query: 614 ------------------------LKPTVIFADQIMYTGFAYAARSGASVGIDDMVIP-- 647 + +I ++ + G S GI+ + Sbjct: 634 QLGKSSLGFGNKFSIFSSFSIFNSNNFILNCLLKISKMTSSWFSDFGFSFGIESITPDKN 693 Query: 648 --EKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVID-IWAAANDRVSKAMMDNLQTE 704 +KK+ ++ +Q ++ I I+ + K+ Sbjct: 694 QLKKKNILVRNCYNLCNSFIKQNSKQKKKKEKQSESSIQKIFCFLREDFGKS-------- 745 Query: 705 TVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIE-------- 756 + S NS +M +G++GS + Q++ G + I + Sbjct: 746 ------LFVFNKFSENSGKIMTSAGSKGSKNNLSQMSLCLGQQSIGGERIKKGFLKRILP 799 Query: 757 --------------TPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVD 802 I +F +GLN + +F + R+GL DTA+KTA +GYL RRL+ Sbjct: 800 HFYYSKMGCNPSQNGFIQRSFLQGLNSVDFFFHSIAGREGLVDTAIKTAETGYLQRRLMK 859 Query: 803 VAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLG-------RVTAEDVLKPGTAD 855 +D+V+ D + G D P + +L +V K + Sbjct: 860 TLEDVVIFYDYSARTSDGRLIQPKFGLDCINPGKVSILFGLNNSYRKVENFHFWKKNNLN 919 Query: 856 ILVPRNTLLH---------------EQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYG 900 L L K+ + +C Sbjct: 920 FSERETFLRSFSFGDMDSIPFFFKIRDLAYGLLNFKNQKKKIFFFDIEKNMKKILENCS- 978 Query: 901 RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL 960 + G ++G +AAQSIGEPGTQ+T++TFH G + + ++ + Sbjct: 979 -----KLKMEPGSSVGALAAQSIGEPGTQMTLQTFHHAGISDLNITQGVPRINEIMNASK 1033 Query: 961 SNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANW 1020 + +V+ F K+++ + GE + + + + Sbjct: 1034 KILSPIVSF----------------KFFNLGKKNFFQCKLQIEKIYFGEICSKFDIIIDS 1077 Query: 1021 DPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKD--LRPAL 1078 + + + + + + + ++ G++S + P+ Sbjct: 1078 ELIFIDIFFKKN---FLKKLGLNLNFKKIVQKIGGINSFWNKSRFFYQKSRYFMRIFPSK 1134 Query: 1079 KIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGL 1138 + + + + I D IS + + Sbjct: 1135 PTEKKTFSYIELLKIIYSCKKDFSQIEICGFSDSKNIS--------FYQKFQISSVFCLN 1186 Query: 1139 PRVADLFEARRPKEPAILA-EISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPK---WR 1194 ++ D F+ +I + I I+ ++ ++I + I K + Sbjct: 1187 SKLLDAFDLLFVNLQSIYSNHILMILETFGIEASRKAIIIEIQKIFQLHNISINKKHFFL 1246 Query: 1195 QLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVN 1235 + + G + +IL L + N Sbjct: 1247 LAEIMTFQGKILGITRYGISKMKENILVLASFEKTIETLFN 1287 >UniRef50_Q6E6G2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Antonospora locustae RepID=Q6E6G2_ANTLO Length = 1089 Score = 558 bits (1437), Expect = e-157, Method: Composition-based stats. Identities = 185/1136 (16%), Positives = 356/1136 (31%), Gaps = 191/1136 (16%) Query: 18 DAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKR 77 ++ + I + S EV P + + P +GL+ R+ D Sbjct: 5 SSVSFTTYTASEILAISCVEVSVPASFDS-LGHPLPNGLYDERMGPLKMDG--------- 54 Query: 78 LKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIER 137 IC C + + GHI L + + ++ + E+ Sbjct: 55 ------ICRTCNLGYFECP---GHFGHIMLPDVMINPMHFDLIFKKVASTCERCFSKAEK 105 Query: 138 VLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQE 197 S+ + + G F Sbjct: 106 KCGRCSFRMPK-------------------FSRSCGKVFRNGC----------------- 129 Query: 198 CEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDG 257 + +L ++ + L V+PV+P LRP+ DG Sbjct: 130 -------------------FMRPCDILITLQKACMDADQYFLRVVPVVPNRLRPINHCDG 170 Query: 258 GRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRN----------------------- 294 R N ++I +K + + I++ Sbjct: 171 -RVFEDSQNIFLTKIIKCALAVKENVAASENIDIMQEKRPNGSEREPYEGLNGAELPCSK 229 Query: 295 EKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSV 354 E L +V+ D+ IT + + +++ K+G FR+ ++GKRV+Y+ RSV Sbjct: 230 EFNDLISSVNEYYDSSS----ITYAKGHTPNGIKQLLERKEGLFRKYIMGKRVNYAARSV 285 Query: 355 ITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWD---- 410 I+ P L + GLP A +L P L + K D Sbjct: 286 ISPDPNLETREIGLPLVFAKKLTFPENVTPFNHDRLRRAVINGPKYPGAALLKSGDVVTN 345 Query: 411 ----------------------ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEG-KAI 447 + + + +L+NR PTLH+ I A++ +++G K + Sbjct: 346 LLHVPEEKRVSLANQLLIGRKTVYRHLNKTDFLLVNRQPTLHKPSIMAYKVRILQGEKTL 405 Query: 448 QLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVV 507 +LH C ++NADFDGD+M VH ++ EAR L ++ N NG PI QD + Sbjct: 406 RLHYANCNSHNADFDGDEMNVHAMQCYISKSEARYLALNDYNYKVATNGNPIRGLVQDHI 465 Query: 508 LGLYYMTRDCVNAK----GEGMVLTGP------KEAERLYRSGLASLHARVKVRITEYEK 557 + +T + G + + ++A + SG+ K I Sbjct: 466 VMSAVLTMKDYFLRPSEYGNVLQIPLLSKEAHHEKAAPVCSSGVLKRIIVPKPAIRRPVT 525 Query: 558 DANGELV---------------AKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAIS 602 G+ V + LK +I + ++++ A Sbjct: 526 LYTGKQVVTALLQSLRLPISMRRTSRLKLCGHPEESTVVIKNGEMLTGVLDKNNLGPAEK 585 Query: 603 KMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEK----KHEIISEAE 658 +++ C + G + G ++ ++D+++ EK + I E Sbjct: 586 GLIHQCGEVFGDNVYNDLLTAVSQVINKLLVMDGYTLRMEDLLLSEKGEAGRKAAILEGR 645 Query: 659 AEVAEIQEQFQSGLVTAGE--RYNKVIDIWAAANDRVSKAMMDNLQTETVINRDG-QEEK 715 + ++ + G R + W A D + + M + +E V + Sbjct: 646 MHIDSAIRRYLEENLEHGATGRPRHLDKSWVACLDSLVRNSMCEVASEVVAKSMHKGMLR 705 Query: 716 QVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGS------------------IIET 757 +N + ++ +GA+GS Q++ M G Sbjct: 706 NFPYNHLILIVQTGAKGSLVNASQISAMLGQQELEGRRVPLMVDGRTLPVLSETTAESGG 765 Query: 758 PITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTH 817 I F +G+ + Y+ R+GL DTA+K A+ G + + + + V D + Sbjct: 766 LIFERFLDGIGICAYYFHCMAGREGLVDTAVKPADQG-ICSDVYQHLEGVKVEYDGTVRN 824 Query: 818 EGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSV 877 G + G D +P + +G + + L R+ L + Sbjct: 825 NGNAIVSFRYGEDGLDPTK---VG-MLKDAEFLKNNYAELARRHAEERNSTVKLKGSVAY 880 Query: 878 DAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHI 937 + R G+ +G++A QS+GEP TQ+T+ TFH Sbjct: 881 GHMDERHREYIGLQHVDLETLSEWRRVLAE-AQPGDPVGIVAGQSLGEPSTQMTLNTFHH 939 Query: 938 GGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKV 997 G ++ ++ + N+++ L + S N + Sbjct: 940 AGVGAKNMTLGIPRLVEILMVASKNIRTPY-----LTVPSENITEHFKTVNLIDCLRKLL 994 Query: 998 PYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDEL 1053 + + + E+ V + V + + + ++ + Sbjct: 995 VCESWV-IKNSERCKRLRITFEIKKEAELVKSCVEERFVYLLNKKIKKVHKEVSSV 1049 >UniRef50_B3S2I6 DNA-directed RNA polymerase n=1 Tax=Trichoplax adhaerens RepID=B3S2I6_TRIAD Length = 1724 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 174/1126 (15%), Positives = 359/1126 (31%), Gaps = 227/1126 (20%) Query: 4 LLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFG 63 + + + A++ + + + IR S ++ T + R GL + Sbjct: 1 MANWSNNTVPIKRPLAVRFSTYTSEDIRKLSVKQITNVHTFD-RLMNANHGGLCDPALGP 59 Query: 64 PVKDYECLCG-------------------KYKRLKHRGVI------CEKCG--------V 90 C Y L + ++ C +C + Sbjct: 60 IETLSPCSTCGQIMDYCPGHFGHIDLHLPVYHPLFFKHMLMLLKGMCFQCHHLHGTPAAL 119 Query: 91 EVTQTKVRRERMGHI-------ELASPTAHIW-------FLKSLPSRIGLLLDMPLRDIE 136 + +++ G + ++A A+ F + I + + Sbjct: 120 NLFVCQLKLLEYGLLTKCYELPDIADAVANTLSSSEDMSFQQIQKGIIHAINAEVQHALA 179 Query: 137 RVLYFESYVVIE--GGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAI--------- 185 + + + + ++++ + + + + + G I Sbjct: 180 NIPLQDKKNTSKWTYSKNVTQCRKLILHQFFHYCISHGSKKCNRCKGPPHIIRAQHHAKV 239 Query: 186 ------QALLKSMDLEQECEQL---REELNETNSETKRKKLTKRIKLLEAF--------- 227 +++ + + E E E ++ ++ ++L K K + Sbjct: 240 FYKQRVKSIDQGKNTEMESEYSLARQKYMHPIEVRYHLRQLWKNEKRILTLVFGTFNKLT 299 Query: 228 -VQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDL- 285 + L V+PV P RP+ L RF S +++ N ++ L+D Sbjct: 300 SNRRIANENSFFLDVIPVPPTRFRPVSTLGDSRF-ESPQTTNLNKILEDNVVVEDLIDNL 358 Query: 286 -----------------------------AAPDIIVRNEKRMLQEAVDALLDNGRRGRAI 316 + P + N LQ V+ +D+ + Sbjct: 359 KQEENKNVNDHDVKVKSYYFGGRSIKIAGSTPTARLHNAWLRLQTHVNCFVDSDLDKLSS 418 Query: 317 TGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALEL 376 + + +++ K+G R++++GKRV+++ RSVI+ + + G+P+ A +L Sbjct: 419 DKA-----PGIKQILEKKEGLLRKHMMGKRVNFAARSVISPDLSINCDEVGVPEVFATKL 473 Query: 377 FKPFIYGKLELRGLATTI------KAAKKMVEREEAVVWD-------------------- 410 +R L + ++E E+ + Sbjct: 474 TYCQPVTPFNVRQLRNAVINGPNKHPGATLIEFEDGNIKKISQHSFNQRQALAKQLLTPN 533 Query: 411 ---------ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAYNAD 460 + ++ VL+NR PTLHR I A + ++ G K ++LH C YNAD Sbjct: 534 TSHVGQCKKVHRHLVDGDVVLMNRQPTLHRPSIMAHKVRVLPGEKTLRLHYANCKCYNAD 593 Query: 461 FDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLG-LYYMTRDCVN 519 FDGD+M +HVP + ++ EA + + L P +G+PI QD ++ + M R + Sbjct: 594 FDGDEMNMHVPQSELSRAEAYTIASTKYQYLLPKDGKPISGLIQDHMVSSVKLMIRGRMF 653 Query: 520 AKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAIL 579 K + L ++ L +K R K L+ K++T + Sbjct: 654 TKEQYFQLIYFALTDKDGPIHLLP-PCIIKPRQLWSGKQVLSTLLLNILPKNSTPLNMLG 712 Query: 580 W---------------------------------MIVPKGLPYSIVNQALGKKAISKMLN 606 +I L I+++A +++ Sbjct: 713 KSKIADKSWVNTRMKKKSRYYKPLYDEILSESQVVIRQGELLCGILDKAHFGATSYGLVH 772 Query: 607 TCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEV----A 662 CY + G + F + + +G ++GI+D+++ + + + + Sbjct: 773 CCYELYGGDTSTTFLSSVSKLLTKFLQMNGFTLGIEDILVRQDADNLRQQFIKDCASSGN 832 Query: 663 EIQEQF---QSGLVTAGERYN---KVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQ 716 +I ++ S + + K D+ A + + K Sbjct: 833 KIAKEAFNVNSKSLVQEKFCQAHLKNKDLLAELESHMKRNTDHFTNEINKACTGAGLLKL 892 Query: 717 VSFNSIYMMADSGARGSAAQIRQLAGMRGLM--------------AKPDGSIIE------ 756 N++ +M SGA+GS Q++ + G + + P + + Sbjct: 893 FPENNLQLMVQSGAKGSTVNCMQISCLLGQIELEGKRPPLMISGRSLPSFTPYDTSPRAG 952 Query: 757 TPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGT 816 + F GL +YF R+GL DTA+KT+ SGYL R LV + LVV D Sbjct: 953 GFVDNRFLSGLRPQEYFFHCMAGREGLVDTAVKTSRSGYLQRCLVKHLEGLVVQYDLTVR 1012 Query: 817 HEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENS 876 + G D + + L T N + + Sbjct: 1013 DTDGSVIQFQYGEDSVDVTNTQFL-----------STVHYPFMANNYISMLDKLDF-KAV 1060 Query: 877 VDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQS 922 +++ + + + + R+L + + A Q Sbjct: 1061 MESDFINRKKAVRSYKKLAKWFQKRNLKIDDLPPLRQLYSTSAVQE 1106 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 76/551 (13%), Positives = 153/551 (27%), Gaps = 78/551 (14%) Query: 873 EENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTM 932 EN + + V CD + + R ++ G +G++AAQSIGEP TQ+T+ Sbjct: 1192 YENGIPTSRNNDYVPCDNFRKMMHLKFMR-----ALVEPGCPVGLLAAQSIGEPSTQMTL 1246 Query: 933 RTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTK 992 TFH G +++ + N+K+ + ++ + T Sbjct: 1247 NTFHFAGRGEMNVTLGIPRLREILMVGSPNIKTPSM-------------IVILKKNKDTD 1293 Query: 993 ESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDE 1052 ++ K + V + + + V F R+ + + + Sbjct: 1294 KNAKYLKKHFTRVTLSQ-VNSN-FLFMLLLYHVYVYVLTCEFQRYYSVRMNLLPYKDYKD 1351 Query: 1053 LTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDG 1112 + V+ E ++ K++ A ++ +I + V + Sbjct: 1352 EFAIKPARVIKFIEDVFILHFIKSVEKVIKASKSNKVINLNKLGRFRKF---RDVHDDAK 1408 Query: 1113 VQISSGDTLARIPQE---SGGTKDITGGLPRVADL------------------------- 1144 + + + + +V L Sbjct: 1409 EKSKESTQDEETTYDDQLTNNPNQLNHKSNKVKKLSYDDNTDDETEDSSSQSDDNDDGSE 1468 Query: 1145 FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV 1204 + + + + + +R + I + N + + Sbjct: 1469 LYSNQSQNSNEFSMHIFDCEITRNFGFCKRSNKFFHFFNLKTVSAIHQRIVANSHDVQNK 1528 Query: 1205 ERGDVISDGPEAPHDILRLRGVHA-VTRYIVNEVQDV--------------YRLQGVKIN 1249 + I+ + + + EVQ V GV + Sbjct: 1529 RWYEFTFTVRLNTCKIILEPIIEQLAKQATIREVQSVKKCYINKDKNETVTLTTDGVNLQ 1588 Query: 1250 DK-HIEVIVRQ----------MLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKV 1298 D I+ M I A + E E V N + Sbjct: 1589 DTWQFANIIDVNKLYTNEIHAMASTYGIEAAYRAIIKEIENVFRVYGIDVNYRHLSLIAD 1648 Query: 1299 GATYSRDLLGITKASLAT-ESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLI 1357 TY + + +A+ S SF+ T L EA G+ D L+ ++ GR++ Sbjct: 1649 YMTYEGSYRPLNRLGMASCSSPFQKMSFETTVHFLREATAHGEIDVLKSPSSRLVTGRVV 1708 Query: 1358 PAGTGYAYHQD 1368 GTG Sbjct: 1709 NGGTGCFDLVQ 1719 >UniRef50_P91875 DNA-directed RNA polymerase I subunit RPA1 n=11 Tax=Drosophila RepID=RPA1_DROME Length = 1642 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 173/1070 (16%), Positives = 340/1070 (31%), Gaps = 227/1070 (21%) Query: 20 IKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLK 79 ++ A+ + IR S +V T + GL+ R+ G Y R Sbjct: 16 LEFAVFTDQEIRKLSVVKVITGITFD-ALGHAIPGGLYDIRM-----------GSYGRCM 63 Query: 80 HRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLL----------- 128 C C +++ MGHIEL +P + +F+K + + + Sbjct: 64 DP---CGTC-LKLQDCP---GHMGHIELGTPVYNPFFIKFVQRLLCIFCLHCYKLQMKDH 116 Query: 129 ----------------------------DMPLRDIERVLYFESYVVIEGGMTNLERQQIL 160 ++ ++ E ++ ++ ++ + + + Sbjct: 117 ECEIIMLQLRLIDAGYIIEAQELELFKSEIVCQNTENLVAIKNGDMVHPHIAAMYKLLEK 176 Query: 161 TEEQ---------------YLDALEEFGDEFDAKMGAE-AIQALLKSMDLEQECEQLRE- 203 E+ AL+ G + + ++ + + + ++E Sbjct: 177 NEKNSSNSTKTSCSLRTAITHSALQRLGKKCRHCNKSMRFVRYMHRRLVFYVTLADIKER 236 Query: 204 ------------ELNETNSETKRKKLTKRIKLLEAFV-------------QSGNKPEWMI 238 + +++ L + + + Sbjct: 237 VGTGAETGGQNKVIFADECRRYLRQIYANYPELLKLLVPVLGLSNTDLTQGDRSPVDLFF 296 Query: 239 LTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLK------------------ 280 + LPV PP RPL + G + D+Y +I N+ L Sbjct: 297 MDTLPVTPPRARPLNMV-GDMLKGNPQTDIYINIIENNHVLNVVLKYMKGGQEKLTEEAK 355 Query: 281 ---RLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGR 337 + L + LQ +VD LLD + + L +I+ K G Sbjct: 356 AAYQTLKGETAHEKLYTAWLALQMSVDVLLDVNMSREM------KSGEGLKQIIEKKSGL 409 Query: 338 FRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAA 397 R +++GKRV+Y+ R+VIT P + + + G+P A +L P + + L + Sbjct: 410 IRSHMMGKRVNYAARTVITPDPNINVDEIGIPDIFAKKLSYPVPVTEWNVTELRKMVMNG 469 Query: 398 ------KKMVEREEAV--------------------------VWDILDEVIREHPVLLNR 425 ++ + + + V+ +LLNR Sbjct: 470 PDVHPGANYIQDKNGFTTYIPADNASKRESLAKLLLSNPKDGIKIVHRHVLNGDVLLLNR 529 Query: 426 APTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 484 P+LH+ I + ++ G K +LH C AYNADFDGD+M H P + A+ EA L+ Sbjct: 530 QPSLHKPSIMGHKARILHGEKTFRLHYSNCKAYNADFDGDEMNAHYPQSEVARAEAYNLV 589 Query: 485 MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL 544 +N L P +G P+ QD V+ ++ E + +L + Sbjct: 590 NVASNYLVPKDGTPLGGLIQDHVISGVKLSIRGRFFNREDYQQLVFQGLSQLKKDIKLLP 649 Query: 545 HARVKVRITEYEK------------------DANGELVAKTSLKDTTVGRAILWMIVPKG 586 +K + K + + + + R + P+G Sbjct: 650 PTILKPAVLWSGKQILSTIIINIIPEGYERINLDSFAKIAGKNWNVSRPRPPICGTNPEG 709 Query: 587 --------------LPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYA 632 L ++++ +++ Y + G + + + Sbjct: 710 NDLSESQVQIRNGELLVGVLDKQQYGATTYGLIHCMYELYGGDVSTLLLTAFTKVFTFFL 769 Query: 633 ARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSG--LVTAGERYNKVIDIWAAA- 689 G ++G+ D+++ + + E + + + ++++++ AA Sbjct: 770 QLEGFTLGVKDILVTDVADRKRRKIIRECRNVGNSAVAAALELEDEPPHDELVEKMEAAY 829 Query: 690 ---------NDRVSKAMMDNLQTE-TVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQ 739 DR K+++D + + N++ +M SGA+GS Q Sbjct: 830 VKDSKFRVLLDRKYKSLLDGYTNDINSTCLPRGLITKFPSNNLQLMVLSGAKGSMVNTMQ 889 Query: 740 LAGMRGLMAKPDGSI--------------------IETPITANFREGLNVLQYFISTHGA 779 ++ + G + I F G+ +F Sbjct: 890 ISCLLGQIELEGKRPPLMISGKSLPSFTSFETSPKSGGFIDGRFMTGIQPQDFFFHCMAG 949 Query: 780 RKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRV 839 R+GL DTA+KT+ SGYL R L+ + L V D + + G D + L+ + Sbjct: 950 REGLIDTAVKTSRSGYLQRCLIKHLEGLSVHYDLTVRDSDNSVVQFLYGEDGLDILKSKF 1009 Query: 840 LGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCD 889 D L IL P L + + L + +RS Sbjct: 1010 FNDKFCADFLTQNATAILRPAQLQLMKDE-EQLAKVQRHEKHIRSWEKKK 1058 Score = 139 bits (349), Expect = 9e-31, Method: Composition-based stats. Identities = 77/510 (15%), Positives = 148/510 (29%), Gaps = 72/510 (14%) Query: 901 RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL 960 R + GE +G+IAAQSIGEP TQ+T+ TFH G +++ + Sbjct: 1164 RVKTIKSLAAPGEPVGLIAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMLAS 1223 Query: 961 SNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANW 1020 SN+K+ + ++ + E ++ +V E V + Sbjct: 1224 SNIKT------------PSMDIPIKPGQQHQAEKLRINLNSVTLANLLEYVHVSTGL--- 1268 Query: 1021 DPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKI 1080 T DM E G+ ++ +T + +R LK+ Sbjct: 1269 --------TLDPERSYEYDMRFQFLPREVYKEDYGVRPKHIIKYMHQTFFKQLIRAILKV 1320 Query: 1081 VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARI-------------PQE 1127 +A ++ D + ++ + + ++ Sbjct: 1321 SNASRTTKIVVIDDKKDADKDDDNDLDNGDEVGRSKAKANDDDSSDDNDDDDATGVKLKQ 1380 Query: 1128 SGGTKDITGGLPRVADLF--EARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDP 1185 + V +L + E G + K + D Sbjct: 1381 RKTDEKDYDDPDDVEELHDANDDDDEAEDEDDEEKGQDGNDNDGDDKAVERLLSNDMVKA 1440 Query: 1186 YEEMIPKWRQLNVFEGERVERGDV-ISDGPEAPHDILRLRGVHAVTRYIVNEVQD---VY 1241 Y V V ++ + V + R I+ + D + Sbjct: 1441 YTYDKENHLWCQVKLNLSVRYQKPDLTSIIRELAGKSVVHQVQHIKRAIIYKGNDDDQLL 1500 Query: 1242 RLQGVKI-----------------NDKHIEVIVR----QMLRKATIVNAGSSDFLEGEQV 1280 + G+ I ND H I R + + + + + G V Sbjct: 1501 KTDGINIGEMFQHNKILDLNRLYSNDIH--AIARTYGIEAASQVIVKEVSNVFKVYGITV 1558 Query: 1281 EYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGK 1340 + + + + +G K + S + SF+ + + L AA G+ Sbjct: 1559 DRRHLSLIADYMTFDGTFQPLSR-------KGMEHSSSPLQQMSFESSLQFLKSAAGFGR 1611 Query: 1341 RDELRGLKENVIVGRLIPAGTGYAYHQDRM 1370 DEL ++VG + GTG ++ Sbjct: 1612 ADELSSPSSRLMVGLPVRNGTGAFELLTKI 1641 >UniRef50_A5BD07 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera RepID=A5BD07_VITVI Length = 1350 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 159/924 (17%), Positives = 291/924 (31%), Gaps = 168/924 (18%) Query: 207 ETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLN 266 N ++ ++ + L + V P RP Sbjct: 425 WENEAELCSFISDILQERLGASGNKAGYSMFFLETILVPPIKFRPPSK-GQISVMEHPQT 483 Query: 267 DLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPL-K 325 L +V+ N L + + + LQ++++ L D G+ G +R Sbjct: 484 VLLGKVLQANIALGNAHANNSERSKIISRWMDLQQSINVLFD----GKTAAGQGQRDTGS 539 Query: 326 SLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKL 385 + +++ K+G FRQ ++GKRV+++ RSVI+ PYL +++ G+P AL L P Sbjct: 540 GICQLLEKKEGVFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPW 599 Query: 386 ELRGLATTIKAAK-----------------------------KMVEREEAVV-------- 408 + L I + + VV Sbjct: 600 NVVKLRDAIINGPEIHPGATHYVDKLSTVKLAVNKKMRISISRKLPSSRGVVAQPGRSSD 659 Query: 409 -----WDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEG-KAIQLHPLVC-------- 454 + + VL+NR PTLH+ I A +++G K +++H C Sbjct: 660 NEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCRVESEHIS 719 Query: 455 ----------AAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQ 504 + YNADFDGD+M VH P ++ EA ++ + N + P+ G+PI Q Sbjct: 720 MLDLDDCSDSSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYIVPSRGDPIRGLIQ 779 Query: 505 DVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHAR-------------VKVR 551 D ++ +T+ E + + Sbjct: 780 DHIVSAVLLTKKDTFLTREQYNQLLYSSGLSSGSGSFIGKPGKKVSVLDSEDEMQPLLPA 839 Query: 552 ITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKK------------ 599 I + E +G+ V L T GR +P + +K Sbjct: 840 IWKPEPLWSGKQVITAVLNHITRGRKPFTTEKDGKIPREYFGSEIDEKKSGKGKDPGSDR 899 Query: 600 --------------------------------AISKMLNTCYRILGLKPTVIFADQIMYT 627 +++ + G I + Sbjct: 900 RKEKRIEKKHGEYKLLIHKNELVRGVIDKAQFDKYGLVHMVQELYGSNTAGILLSVLSRL 959 Query: 628 GFAYAARSGASVGIDDMVIPEK----KHEIISEAEAEVAEIQEQF---QSGLVTAGERYN 680 + G + G+DD++I + + ++E + +F G + + Sbjct: 960 FTVFLQMHGFTCGVDDLLISPNYDIARKIELDKSENIGELVHCKFIGSNHGKIDPVKLQV 1019 Query: 681 KVIDIW--------AAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARG 732 +V I + + + + K N + +M +GA+G Sbjct: 1020 EVEKIILSNGEAAITRLDRMMKNELNELTSKVNKDLLLKGLVKPFPKNCLSLMTTTGAKG 1079 Query: 733 SAAQIRQLAGMRGLMAKPDGSIIE--------------------TPITANFREGLNVLQY 772 S Q++ G + I+ F GL+ +Y Sbjct: 1080 STVNFSQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDCAARAGGFISDRFLTGLHPQEY 1139 Query: 773 FISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVK 832 + R+GL DTA+KT+ SGYL R L+ + L V D + G D Sbjct: 1140 YFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDYTVRDSDGSIVQFNYGDDGV 1199 Query: 833 EPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDF 892 + + + A V + + + L + K + Sbjct: 1200 DVHQTSFITEFEALAVNQEVVCEKFGQDGKF--NGYIQKLPKELRKKTKKFIEGFMEERQ 1257 Query: 893 GVCAHCYGRDLAR-------GHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAA 945 +D + GE +GV+AAQS+GEP TQ+T+ TFH+ G Sbjct: 1258 DFDNMKKQKDFVNLVKQKYISSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEVNV 1317 Query: 946 AESSIQVKNKGSIKLSNVKSVVNS 969 +++ +++K+ + + Sbjct: 1318 TLGIPRLQEILMTAANDIKTPIMT 1341 Score = 52.6 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Query: 17 FDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKD 67 +A+K + + + +R +SF ++ P ++ +P GL+ + ++ Sbjct: 105 VEAVKFSFFTDEEVRKYSFKKITSPLMLDS-VQRPVPGGLYDPALGSIDEN 154 >UniRef50_A4SAV6 DNA-directed RNA polymerase n=2 Tax=Ostreococcus RepID=A4SAV6_OSTLU Length = 1663 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 184/1008 (18%), Positives = 320/1008 (31%), Gaps = 178/1008 (17%) Query: 122 SRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMG 181 + I L + + E + V G + R + + + D Sbjct: 211 NLIKEFLAIQPKKCEN-CGAMNPKVSPEGHNKIFRGALPKAHHENNLAKGIDINDDMASD 269 Query: 182 AEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQ------------ 229 +E + S+D + + + K+L + + Sbjct: 270 SETM-----SVDERVQEAAKSLYITPIEARALLKRLWMYEYDFCSMIWATTPPNKCTKRG 324 Query: 230 --SGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAA 287 + P + L V P RP + G N +I N L L Sbjct: 325 EERRSDPARFFIQTLLVAPSKFRPPSKM-GDMIFDHPQNTALTTIIQANLSLAELFRTPP 383 Query: 288 PDIIVRN--------EKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFR 339 LQ V+ L+D + + + ++ K+G FR Sbjct: 384 TVPEPPEVRAGRAVRAWLALQSGVNRLIDATKADTQEA----KQAIGIRQQLEKKEGLFR 439 Query: 340 QNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKK 399 N++GKRV+++ RSVI+ PYL + G+P A +L P + + + T ++ + Sbjct: 440 MNMMGKRVNFAARSVISPDPYLGTSEIGVPPVFAKKLTFPELVTPHNVDLMRTLVENGPE 499 Query: 400 MVEREE-----------------------------------------AVVWDILDEVIRE 418 + + + + Sbjct: 500 IHPGANAIEDERGRVIHLDKFTAEKRAAIAKTLLATTAAGSADGPARPLAKTVYRHLRDG 559 Query: 419 HPVLLNRAPTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQ 477 +L+NR PTLH+ GI A ++ G + +++H C+ +NADFDGD++ +H P + Sbjct: 560 DVMLVNRQPTLHKPGILAHTARVLPGQRVVRMHYSNCSTFNADFDGDEINLHFPQDHLGR 619 Query: 478 LEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVLTGPKEAERL 536 EA +M P +G+P+ QD + ++ RD + E L + Sbjct: 620 AEAYEIMHGDRQFTVPTDGKPLRGLIQDHICSGLLLSMRDSFFDRSEFTQLLYSGLVDYC 679 Query: 537 -YRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLP------- 588 G + A + + + G+ V L T GR L P +P Sbjct: 680 GDEHGKIDVPA---PALLKPKALWTGKQVIAAVLSHITRGRPPLTFSAPCKIPATFFGGE 736 Query: 589 -----------YSIVNQALGKKAIS--KMLNTCYRILGLKPTVIFADQIMYTGFAYAARS 635 + + K +++ + G + + Sbjct: 737 DSGEDRLIIRRNYFCSGVVDKNMFGKYGLVHAVAELHGRSTAGALLSIFSRLFTNFLQKH 796 Query: 636 GASVGIDDMVIP-----------EKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVID 684 G + GIDD+++ K E+ A A+VAE + ++TA Sbjct: 797 GFTCGIDDLILTADAEKDRVVELNKADEMCKTATADVAEASGKSDEEVMTAIAAKLLENP 856 Query: 685 IWAAANDRVSKAMMDNLQT-ETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGM 743 W A D + ++ + + +K S N + +M SGA+GS Q+A Sbjct: 857 EWGAQLDMKASGALNKVTSATVKKCLPFGTKKPFSKNCLSIMTISGAKGSLVNFSQIAAA 916 Query: 744 RGLM--------------AKPDGSIIE------TPITANFREGLNVLQYFISTHGARKGL 783 G P + I F GL+ +YF R+GL Sbjct: 917 LGQQELEGRRVPRMPSGKTLPSFEPFDISSRANGYIACRFFSGLDPAEYFFHCMAGREGL 976 Query: 784 ADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGR- 842 DTA+KTA SGYL R LV + + V D + G D + R L + Sbjct: 977 VDTAVKTARSGYLQRCLVKNLESMRVHYDFTVRDSDGSIVQFQYGEDCVDVTRSGYLEKF 1036 Query: 843 -VTAEDVL--KPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCY 899 AE+ + L ++ L + + + + GV + Sbjct: 1037 EFLAENPELILLNNEAAISMLPKLNKKKVSVLETIGRKEELPRFCMENFGDQLGVLPEKF 1096 Query: 900 GRDLAR------------------------------------------GHIINKGEAIGV 917 G +L ++ GEA+GV Sbjct: 1097 GDELKTFIDSRPKGYWAEEKGKKNESSLAAKSGLTAEEFAMLMNMRYLTYVAPPGEAVGV 1156 Query: 918 IAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKS 965 IAAQS+GEP TQ+T+ TFH G +++ + + Sbjct: 1157 IAAQSVGEPSTQMTLNTFHFAGRGEANVTLGIPRLRELLMAASKKLLT 1204 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 50/240 (20%), Positives = 84/240 (35%), Gaps = 51/240 (21%) Query: 1139 PRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNV 1198 P V L A+ I+ E GI K+ V+ D DP + + Sbjct: 1458 PHVLVLEIAQEVAVKTIIRETPGI---------KQTFVVGKTDDEDPTGSQPLSIQTDGI 1508 Query: 1199 FEGERVERGDVI---SDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEV 1255 G D+I S + DI++ GV A +V+EVQ V+ + G+ ++ +H Sbjct: 1509 NFGAAWANSDLIEVNSMKSNSVWDIMQTFGVEAGRSTLVSEVQAVFGVYGIGVDTRH--- 1565 Query: 1256 IVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLA 1315 + + + G+ GI K Sbjct: 1566 -----------------------------LSLIGDFMTQQGEYRPCNRS---GIEK---- 1589 Query: 1316 TESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAA 1375 + S S++ T LT+A + G+ D+L ++VGR + GTG + + R A Sbjct: 1590 STSPFLKMSYETATAFLTDATIRGETDDLSSPSSRIVVGRTVDLGTGSFSLKHDIVRAAQ 1649 Score = 92.2 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 26/199 (13%), Positives = 53/199 (26%), Gaps = 25/199 (12%) Query: 15 EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74 +E + + + +R S + P + DGL+ + C+ K Sbjct: 22 KEIASASFSFYDAEDVRKISVKRITNPVLFD-GLNNAVADGLYDPALGPTDSKTTCVTCK 80 Query: 75 YKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRD 134 + + GH+EL P + ++ LL Sbjct: 81 FPGG------------------MCAGHFGHLELVVPVYNPLTFGTVVR----LLKTTCFH 118 Query: 135 IERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDL 194 + S V LE E L E + +M + + Sbjct: 119 CHKFRLHASRVRRF--RERLEMLMDGDMEAAEGVLPEISKKAKEEMSSVFKEVEGDGDAE 176 Query: 195 EQECEQLREELNETNSETK 213 E + + + + L + + Sbjct: 177 EMDLDNIHDVLPRLKTRGR 195 >UniRef50_B7P2L8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ixodes scapularis RepID=B7P2L8_IXOSC Length = 1640 Score = 552 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 173/1056 (16%), Positives = 329/1056 (31%), Gaps = 256/1056 (24%) Query: 9 KAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDY 68 + D + + S D + S V ET + P + GL + + +D Sbjct: 3 FDKIPYRSVDGVSFNVFSTDELLRLSVLSVTCSETFDI-VGHPTKGGLHDSLLGPSDRD- 60 Query: 69 ECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIG--- 125 +C CG+ +GHI L T + F ++L + Sbjct: 61 --------------EVCATCGLGFVACP---GHIGHISLPLLTFNPLFFRTLYQLLRGSC 103 Query: 126 ----------LLLDMPLRDIERVLY-----------------FESYVVIEGGMTNLERQQ 158 + + L ++ + Y + + L ++ Sbjct: 104 FGCARLLSPPAVCQLTLAQLQVLQYGAVGAVQELQELAAEAITDEKGKASRSVMGLALKK 163 Query: 159 ILTE------------EQYLDALEEFGDEF--DAKMG----AEAIQALLKSMDLEQECEQ 200 + E + ++ + F + MG + + M ++ Sbjct: 164 RIDERVKSIMEGRANVKNVVECRQRLIKTFVREHLMGAPRKCPHCGDVRRGMTIQNNARF 223 Query: 201 L----------------------------REELNETNSETKRKKLTKRIKLLE------- 225 + + L + + L + L Sbjct: 224 VYTGRAQGMDIPEEEEEVPVKEESVDTGAQTYLTPLEARKHLRLLWQNESPLLRHLFGAL 283 Query: 226 AFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDL 285 + + L L V P RP+ + G R +V+ + + +L L Sbjct: 284 GSDSQKHPVDMFFLEALVVPPTRFRPMNFMHG-RKYEHPQTVSLSKVLQCCDAARAVLKL 342 Query: 286 AAPDI---------------------------------IVRNEKRMLQEAVDALLDNGRR 312 + + LQ AV+ ++D+ Sbjct: 343 MERNQDSESSEDTMEMQRLQVCTFRQVVDKLPGKDLSSKLHVAWNNLQVAVNVVVDSELD 402 Query: 313 GRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKM 372 S+ + + +++ K+G FR++++GKRV+Y+ RSVI+ PY+ + + G+P Sbjct: 403 ----RLSSNKATPGIKQILEKKEGLFRKHMMGKRVNYAARSVISPDPYIGVDEIGVPMVF 458 Query: 373 ALELFKPFIYGKLELRGLATTIKAAKKMVE---------------------REEAVVWD- 410 A L P + L + + R EA+ Sbjct: 459 ATRLSYPEPVTDRNVSELRKAVINGPNVYPGALLVEHGDGTVTRLDPTNRVRREAIAKQL 518 Query: 411 ----------------ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEG-KAIQLHPLV 453 + + +LLNR PTLH+ I A + ++ G K ++LH Sbjct: 519 MTPSDSFKNTLARCKTVHRHLRTGDMLLLNRQPTLHKPSIMAHQARVLPGEKTLRLHYAN 578 Query: 454 CAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYM 513 C YNADFDGD+M H P + A+ EA + L P +G P+ QD V+ + Sbjct: 579 CKCYNADFDGDEMNAHFPQSELARAEASQVATVNRQYLVPKDGTPLSGLIQDHVIAGSLL 638 Query: 514 T-RDCVNAKGEG---------------MVLTGPKEAERLYRSGLASLHARVKVRITEYEK 557 T + + + VL + +G L + I + Sbjct: 639 TMQGRFFNREDYNQLVYGALTFVPSSIKVLPPAIQKPETLWTGKQVLSTVLINCIPRNKP 698 Query: 558 DANGELVAKTSLKDTTVGRAILW-----------MIVPKGLPYSIVNQALGKKAISKMLN 606 E AK K + +I L ++++A +++ Sbjct: 699 APTVEGKAKIPAKAWLRPGSEANEAEAQMSEGQVVIRDGELLCGVLDKAHYGPTQFGLVH 758 Query: 607 TCYRILGLKPTVIFADQIMYTGFAYAARS-GASVGIDDMVIP----EKKHEIISEAEAEV 661 CY + G + + + G ++GI+D+++ +K+ +I+ A E Sbjct: 759 VCYELYGGAISSLVLTAFARLFTHFLQTHVGFTLGIEDILVTLKADKKRKKIMKMARKEG 818 Query: 662 A----------------EIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTET 705 ++ E + ++ +RY K +D + D Sbjct: 819 DGAAKKALGIEEDIAPEDLMESLRGAHLSRNDRYLKQLDA------SMKSVTDDVNNQIN 872 Query: 706 VINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM--------------AKPD 751 K+ N++ +M SGA+G Q++ + G + P Sbjct: 873 KACIPDGLLKKFPENNLQLMVQSGAKGGMVNCMQISCLLGQIELEGRRVPLMLSGRTLPS 932 Query: 752 GSIIE------TPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQ 805 + + F G+ ++F R+GL DTA+KT+ SGYL R L+ + Sbjct: 933 FLPYDTSPRAGGFVDGRFLTGIRPQEFFFHCMAGREGLVDTAVKTSRSGYLQRCLIKHLE 992 Query: 806 DLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLG 841 L+V D G D + L+ ++L Sbjct: 993 GLMVGYDQTVRDSDGS---FQYGEDGLDVLKMQMLK 1025 Score = 76.1 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 33/64 (51%) Query: 906 GHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKS 965 I + GE +G++AAQSIGEP TQ+T+ TFH G +++ + +N+ + Sbjct: 1209 RSICDPGEPVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRMREILMVASANIAT 1268 Query: 966 VVNS 969 Sbjct: 1269 PTMD 1272 >UniRef50_UPI0000E46841 PREDICTED: similar to RNA polymerase I large subunit n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E46841 Length = 1742 Score = 551 bits (1418), Expect = e-155, Method: Composition-based stats. Identities = 177/1062 (16%), Positives = 332/1062 (31%), Gaps = 259/1062 (24%) Query: 7 FLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVK 66 + ++ D+++ + S ++ S E+ P + + P GL+ + + Sbjct: 1 MSVREIPSKRVDSVRFSTYSSQDLKQLSVKELTNPRSFD-DLGHPTLGGLYDPALGPSDR 59 Query: 67 DYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFL-------KS 119 D +C C + MGH+ L P + F Sbjct: 60 D---------------ELCGTCSLGQFHCP---GHMGHVTLPLPVFNPLFFPLVRQLLHG 101 Query: 120 LPSRIGLLL-----------DMPLRD------------------------------IERV 138 LL + D +E Sbjct: 102 SCLECNHLLAPRWTLRLVVQQLRCLDHGLLGSVGDLAELASTVISESDDGEGLADQMETT 161 Query: 139 LYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMG--AEAIQALLKSMDLEQ 196 L ++ + + EE ++ F + A G + ++ + Sbjct: 162 LKEYVDEILSKHVKEQPSEARHIEECRRHVIQSFIRQHVASRGRKCPLCKKPVREIRPHH 221 Query: 197 ECEQLREELNETNSETKRKKLT-----KRIKLLEAFVQSGNK-----------------P 234 L + ++ + + L+ K ++ L A G + Sbjct: 222 NSVILTKVISASGQGLQMVYLSPHEARKHLRNLMANDGVGLRHIFGVLDLPSKRGEDSTI 281 Query: 235 EWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDI---- 290 + L LPV+P RP+ F + +V+ + L LL + Sbjct: 282 DQFFLEALPVIPSKFRPISTAGEKTF-ENPQTGNLSKVLKDCHVLHLLLRVMRQSTSQQG 340 Query: 291 --------------------------------------IVRNEKRMLQEAVDALLDNGRR 312 ++N LQ V+ ++D+ Sbjct: 341 SQDVENGVMEIDVKLTVKDKENVDQSILSTIPGKTLPEKLQNALTQLQTHVNCVIDSDLD 400 Query: 313 GRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKM 372 + + + +++ K+G FR++++GKRV+Y+ RSVI+ PY+ + G+P+ + Sbjct: 401 KISTDKA-----PGIKQLLERKEGLFRKHMMGKRVNYAARSVISPDPYINTDEIGIPQVI 455 Query: 373 ALELFKPFIYGKLELRGLATTIKAAKK------MVEREEAV------------------- 407 A L P + L + ++E E+ Sbjct: 456 AKRLTYPQPVTDWNAQELRQMVMNGPDVHPGALLIENEDGSQVRLRADNQSQRESVAKRL 515 Query: 408 ------------VWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEG-KAIQLHPLVC 454 + + VLLNR PTLH+ GI A + ++ G K ++LH C Sbjct: 516 LTPSNINKQNTGSKKVHRHLQTGDIVLLNRQPTLHKPGIMAHKVRVLPGEKTLRLHYSAC 575 Query: 455 AAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT 514 YNADFDGD+M VH P + EA + + + L P +G P+ QD ++ MT Sbjct: 576 KTYNADFDGDEMNVHFPQNELGRAEALTIASTNHQYLVPKDGTPLGGLIQDHIISGVRMT 635 Query: 515 -RDCVNAKGEGMV---------------LTGPKEAERLYRSGLASLHARVKVRITEYEKD 558 R + E L L SG + + I E K Sbjct: 636 VRGRFFTRLEYQQLVYCSLTDKEGPVKCLPPCIRKPALLWSGKQLISTIIINTIPEGCKP 695 Query: 559 ANGELVAKTSLKDT-----------------TVGRAILWMIVPKGLPYSIVNQALGKKAI 601 + +K + K T +I L ++++ Sbjct: 696 LDFIGKSKINNKSWCKAEPRPPKAGGGALVGTDMCESEVIIREGELLSGVLDKGNYGPTP 755 Query: 602 SKMLNTCYRILGLKPTVIFADQIMYTGFAYAARS-GASVGIDDMVI----PEKKHEIISE 656 +++ Y + G + + G ++G +D+++ EK+ +I+ E Sbjct: 756 YGLVHCIYELYGGHIAGKLLSHFGRLFTTFLQQHTGFTLGPEDIIVLDKADEKRLDILEE 815 Query: 657 AEAEVAE------------------IQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMM 698 ++ +E + ++++ K ID+ + + Sbjct: 816 SKDCGSEAVAQALGVEEFTGFHASTLTKRYEIAHRKPDGSDMKEIDLQMKTKTDLYSNQV 875 Query: 699 DNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM----------- 747 + KQ N++ ++ SGA+GS Q++ + G + Sbjct: 876 SS------TCLGSGLLKQFPENNLQLVVLSGAKGSMVNCLQISCLLGQIELEGRRPPLMV 929 Query: 748 ---AKPDGSIIE------TPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTR 798 + P E + F G+ +YF R+GL DTA+KT+ SGYL R Sbjct: 930 SGRSLPSFPPYETSPRSGGYVAGRFLTGIKPQEYFFHCMAGREGLVDTAVKTSRSGYLQR 989 Query: 799 RLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVL 840 ++ + LVV D + G D + LR L Sbjct: 990 CIIKHLEGLVVNYDQTVRDSDGSIVQFQYGEDGLDILRTPFL 1031 Score = 83.4 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 30/205 (14%), Positives = 65/205 (31%), Gaps = 20/205 (9%) Query: 902 DLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLS 961 + + + GEA+G++AAQSIGEP TQ+T+ TFH G +++ + + Sbjct: 1199 SKYQRALCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMVASA 1258 Query: 962 NVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWD 1021 N+K+ + + ++ K+ ++ +V + + + D Sbjct: 1259 NIKT------------PSMTIPFLNPDISAKKIGRIC-------RQLSRVHLSQVIEDID 1299 Query: 1022 PHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIV 1081 R + + + + +L E T + L +K Sbjct: 1300 IWESYDFPTTHDHYRVYKIRLNFLPHEEYKDELNATPASILSYIEVTFLKQFL-EIVKRK 1358 Query: 1082 DAQGNDVLIPGTDMPAQYFLPGKAI 1106 + + Sbjct: 1359 MKDLKKANFASSRKSKLDLIGDGGN 1383 Score = 74.1 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 28/209 (13%), Positives = 63/209 (30%), Gaps = 19/209 (9%) Query: 1159 ISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPH 1218 + + +P + V G+ ++++G + Sbjct: 1547 CEFKFKVDLTDNKLDMASLVELVSKQATVHHVPGISRCLVS-GQGSGETKLLTEGVNLHN 1605 Query: 1219 DILRLRGVHAVTRYIVNEVQ--DVY----RLQGVKINDKHIEVIVRQMLRKATIVNAGSS 1272 ++ ++N +VY R + + K + + Sbjct: 1606 IVVDFYVDIHAHSTLMNGFMYGNVYDDPVRYEKQAVFPKLMCSNADDFSMEVR-----DV 1660 Query: 1273 DFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVL 1332 + G V+ + + + + G L + S I +F+ R L Sbjct: 1661 FSVYGITVDPRHLSLVSDYMTFEGVYRPFNRIGL-------ESNASPIQKMTFESCMRFL 1713 Query: 1333 TEAAVAGKRDELRGLKENVIVGRLIPAGT 1361 EA + G +D L+ ++VGR++ GT Sbjct: 1714 REATIQGAKDNLQSPSARLVVGRVVNGGT 1742 >UniRef50_Q3LWE3 DNA-directed RNA polymerase n=1 Tax=Bigelowiella natans RepID=Q3LWE3_BIGNA Length = 1510 Score = 550 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 241/1511 (15%), Positives = 501/1511 (33%), Gaps = 173/1511 (11%) Query: 3 DLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIF 62 D ++ K++ K ++ AI + + D I+ +S ET++ + L ++ Sbjct: 2 DFKRYTKSKAKIKKPIAIVYGILNSDEIKRYSIHCFNNKETLDISR---TLENLDIPKMG 58 Query: 63 GPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPS 122 C ++ K GHIEL P + + Sbjct: 59 TIENTSICP------------------LDSNTGKDCPGYFGHIELFLPVFNCNY------ 94 Query: 123 RIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGA 182 L + L+ ++ V Y+ S ++IE TN++ + + + D + + Sbjct: 95 -----LGLILKILKSVNYYTSALLIEKTRTNIQELLKHNISDRISIISKEADRVKTDLLS 149 Query: 183 EAIQALLKSMDLEQECEQ---------------LREELNETNSETKRKKLTKRIKLLEAF 227 +S+ Q + ++ +L + + K ++K + F Sbjct: 150 GDFLPEYESLKGIQIWMRFPLCVKQGKFNPNILVKRKLFPEQAYSILKNISKFDCNILGF 209 Query: 228 VQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAA 287 ++P W+IL LP+ P ++RP + DL +I N+RL+R + Sbjct: 210 DFKNSRPNWLILYNLPIPPINIRPYSKKNLFIKYEDDLTYKLHDIIKANDRLQRSKNSRK 269 Query: 288 PDIIVRNEKRMLQEAVDALLDNGRRG-RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKR 346 ++ N + +L + DN + T + +P+KS++ +KGK GRFR+NL+GKR Sbjct: 270 SSELLENYRELLSYHIFTYFDNSSTKVKLSTHVSGKPIKSISQRLKGKFGRFRRNLVGKR 329 Query: 347 VDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI------KAAKKM 400 VD++GR+VIT Y+ L + G+P +A +L P + K + L+ I A + Sbjct: 330 VDFTGRTVITGDSYIHLEELGIPMLIAKKLTLPEVVNKFNIDRLSYIIDSTGNELKANYI 389 Query: 401 VEREEAVV----------------WDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEG 444 ++ V+ + I + V+LNR P+LH++ + + Sbjct: 390 IKGYNKVIDLRYKSSNSIILLKYGFIIERHIQSGDIVILNRQPSLHKMSMMGHRVKIFPK 449 Query: 445 KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQ 504 +L+ V YNADFDGD+M +H+P + + E+ +M NNI+SP +P+I Q Sbjct: 450 LTFRLNLSVTTPYNADFDGDEMNIHIPQSELTRSESTFIMNVINNIMSPQANKPVIGLVQ 509 Query: 505 DVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELV 564 D + Y ++ + K+ + ++ + +K K + Sbjct: 510 DTLSTCYTLSSRDSFLN------SLEKDYLKNNYKNFSTQPSIIKPLKKWTGKQLLSSFL 563 Query: 565 AKTSLKD----TTVGRAILW-------MIVPKGLPYSIVNQALGKKAISKMLNTCYRILG 613 + T I + + N+ + + ++ + Sbjct: 564 PHLTFLHRESRKTFHFEDSNNYNDSSMYIQDGKIMMGLFNKKTIGASYNSIIQNIWLEYD 623 Query: 614 LKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLV 673 F D T ++G +V + D+ + +K I + I + Sbjct: 624 HFSCRNFIDLCQTTARHTNIKNGFTVSLWDVFLEKKLFNIFYNIKK--FYIHNWIKLMET 681 Query: 674 TAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGS 733 + ++ + +++ ++IN N++ +M +SG++GS Sbjct: 682 KKQIKMTQIKNFKFNTITKINNLSTTKKYFSSLINLFLNLTH-NQNNNMNIMLNSGSKGS 740 Query: 734 AAQIRQLAGMRGLMA-----------------KPDGSI---IETPITANFREGLNVLQYF 773 + Q+ G+ G + G I I +NF GLN +YF Sbjct: 741 LINLIQIVGLLGKQSSIKINNMNHFHGRLFCHNIIGHIPIESTGFILSNFFYGLNPHEYF 800 Query: 774 ISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKE 833 R+G+ DT++KTA +GY+ R+ ++L+ D + + + G D + Sbjct: 801 CHAISGREGIIDTSIKTAETGYIQRKFSKSMENLICYYDGTVRNSSQSIIQFLYGEDGLD 860 Query: 834 PLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCD--TD 891 P L ++T K T L L D+ N+ + + T Sbjct: 861 PT---FLEKITLSKNHKKQTNKNLQSNLKLKTYDTKDIGFSNNFSHIHFLNTNFKKYYTQ 917 Query: 892 FGVCAHCYGRDLARGHIINKGEAIGVI--------AAQSIGEPGTQLTMRTFHIGGAASR 943 + + + + +I + Q G+ T Sbjct: 918 DKILNKIIKQFTMLKRLKTCYIPVNIIRIIAHTKSSLQRYGKIQKNCTCPNLLSIYLGKL 977 Query: 944 AAAESSIQVKNKGSIKLSN-VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVP-YGA 1001 + S + + + + K + T + + I+ F ++ Sbjct: 978 YNSLSLSRKTCYFKALFNKIINPSIVLIIKNIFTVKLIKSLKINLFQLKWIFKQIENKYN 1037 Query: 1002 VLAKGDGE--QVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTD--ELTGLS 1057 GE V G +++ +G + + Sbjct: 1038 KSLTTPGECVGVIGAQSIGEPTTQMTLNTFHYAGIAEKDVTTGVPRFNELINATKKPKTK 1097 Query: 1058 SLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISS 1117 + + + ++ + + + + I + + +S Sbjct: 1098 CSYLSLIHNSKLEIESTDFIISRLEETKLEFFVEKLYLLKVFDSQYTRIDFIS-SILKNS 1156 Query: 1118 GDTLARIPQESGGTKDITGGLPRVADLFE-----ARRPKEPAILAEISGIVSFGKETKGK 1172 +++ + + I + LFE + K+ + + G + K Sbjct: 1157 LESINPSSKSDQNPRWILKLIISRWRLFEKKISIVKLFKKLSDKLKNYGNIQISFADKKF 1216 Query: 1173 RRLVITPVD-------------GSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEA--- 1216 + I + I + +L V + + + + Sbjct: 1217 IEIAIIISNTLFAPYSIKLLDVDPKKKTPHIKERCKLGVRKSKFLYILEKFKSEILNIPI 1276 Query: 1217 --PHDILRLRGVHAVTRYI------VNEVQDVYRLQGVKIN----------DKHIEVIVR 1258 DI+ R + V +I +N +++ L + IN D + Sbjct: 1277 LGIPDIVHCRVSNKVRTFINNLNYDLNSLENFILLDCIGINLVKTLTHPWIDSSLTYCND 1336 Query: 1259 QMLRKATIVNAGSSDFLEGEQVEYSRVKI--ANRELEANGKVGATYSRDLLGITKASL-- 1314 + E + N+ + +T + I + L Sbjct: 1337 VNCFYDNFGIEAARLLFIKELKKILEFDNSYINQHHISCLADYSTNTGRPNAINRYGLKV 1396 Query: 1315 ATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRA 1374 + S + SF+ET + L +A+V K D + E +I G+ GTG++ + + Sbjct: 1397 QSLSTLQECSFEETMKTLLKASVETKVDRFSSITETIIFGKESNFGTGFSNMKKTKFQEV 1456 Query: 1375 AGEAPAAPQVT 1385 + + Sbjct: 1457 QISKNSFKRSP 1467 >UniRef50_Q9TL05 DNA-directed RNA polymerase subunit beta' n=1 Tax=Nephroselmis olivacea RepID=RPOC1_NEPOL Length = 863 Score = 549 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 300/685 (43%), Positives = 400/685 (58%), Gaps = 91/685 (13%) Query: 14 TEEFDAIKIALASPDMIRSWS---------FGEVKKPETINYRTFKPERDGLFCARIFGP 64 T + +K+ +ASP IRSW G + K ETINYRT+KPE DGLFC R FGP Sbjct: 94 TRDLRFLKLRIASPTRIRSWGTHKLPNGKQVGRITKAETINYRTYKPEMDGLFCERAFGP 153 Query: 65 VKDYECLCGKYKRLKHRGV------ICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLK 118 VKD+EC CG+ K + +C CGVE+ +K+RR RMG+IEL P HIW+LK Sbjct: 154 VKDWECHCGRTKGQERNKDGIPIPRVCTHCGVELRDSKIRRHRMGYIELVYPVVHIWYLK 213 Query: 119 SLPSRIGLLLDMPLRDIERVLYFESY--------------------VVIEGGMTNLERQQ 158 S+PS +G+LLD P R++E + Y +Y E Sbjct: 214 SIPSYLGVLLDKPRRELEAITYCTNYASSQDSMAFSASLLFPTTGSFRQSKDSMKWEYLN 273 Query: 159 ILTEEQYLDALE-------EFGDEFDAK----------------MGAEAIQALLKSMDLE 195 E YL E +G +GA+AI L++++L Sbjct: 274 WFHIETYLGLKEATNSALVHYGKRIQDSPIEVGLPLSEDPRQFSIGAQAIACQLRALNLR 333 Query: 196 QECEQLREELN------------ETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLP 243 L +L E +R KL +R++L+ F+Q+ +PEWM++ LP Sbjct: 334 SVSRLLSRDLYIIDARETRFGALEEEEMKRRSKLIRRLQLIHYFMQTKAQPEWMVIKALP 393 Query: 244 VLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAV 303 VLPPDLRP+V L+GGRFAT+DLNDLYRRV+NRNNR +L + AP+ ++R+EKR+LQEAV Sbjct: 394 VLPPDLRPIVQLEGGRFATTDLNDLYRRVLNRNNRFMKLHKMVAPETLIRSEKRLLQEAV 453 Query: 304 DALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRL 363 D L DNG+RG+ + S+ RPLKSLAD +KGKQGRFRQNLLGKRVDYSGRSVI VGP LRL Sbjct: 454 DGLFDNGKRGKPVLNSSNRPLKSLADALKGKQGRFRQNLLGKRVDYSGRSVIVVGPKLRL 513 Query: 364 HQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVERE-----------EAVVWDIL 412 HQCGLPK+MALELF+P + L R +A I+ AKK++ +AVVWD L Sbjct: 514 HQCGLPKEMALELFQPLVIRLLLKRKVAPNIRYAKKLMHHAVARGPENPTIIDAVVWDTL 573 Query: 413 DEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPL 472 V+ +P+LLNRAPTLHRLGIQAFEPVLI G+AIQLHPLVC +NADFDGDQM VH+PL Sbjct: 574 AAVVEGYPILLNRAPTLHRLGIQAFEPVLINGRAIQLHPLVCTGFNADFDGDQMGVHIPL 633 Query: 473 TLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAK-GEGMVLTGPK 531 + EA+ EA+ LM++++N+LSPA G+PI+VPSQD+VLG YY+T + + EG+ +G Sbjct: 634 SAEARAEAKLLMLASHNLLSPATGQPIVVPSQDMVLGWYYLTTENPWIESTEGLYFSGLS 693 Query: 532 EAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVP------- 584 + E Y G LH+ + VR + + G+ L+ W I Sbjct: 694 DVEHAYHQGQIHLHSIIWVRWGGESEGSLGDEFEDNPLEIRIDANGHSWHIYSQYQLRYD 753 Query: 585 --KGLPYSIVNQALGKKAISKMLNT 607 L + G+ +++++ Sbjct: 754 DEGDLISQFIRTTTGRVVFNQLVHR 778 >UniRef50_B2VT60 DNA-directed RNA polymerase n=7 Tax=Leotiomyceta RepID=B2VT60_PYRTR Length = 1790 Score = 541 bits (1393), Expect = e-152, Method: Composition-based stats. Identities = 188/1053 (17%), Positives = 340/1053 (32%), Gaps = 185/1053 (17%) Query: 196 QECEQLREELNETNSETKRKKLTKRIKLLEAFVQS--------GNKPEWMILTVLPVLPP 247 +E E +E ++ + L + + + S P+ + V P Sbjct: 323 EESENAQEYVSAAEVKATMTLLFENESEMMRMLYSPYGSKSLVDVSPDMFFTQAIIVPPN 382 Query: 248 DLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL--LDLAAPDIIVRNEKRM------- 298 RP G S N Y+ +I + ++ P+ ++ Sbjct: 383 KYRPEDGT-GETITESPKNKPYKSIIEACETINQISHEMRGRPNETGYRQRNFDDMQTQF 441 Query: 299 --LQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIT 356 LQ V+AL+D + + ++ K+G FR+N++GKRV+++ RSVI+ Sbjct: 442 VNLQGVVNALIDCDANPVQGR-AGAVNTDGIKQALEKKEGLFRKNMMGKRVNFAARSVIS 500 Query: 357 VGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKM------VEREEAVV-- 408 P + ++ G+P A +L P L + +E E + Sbjct: 501 PDPNIETNEIGVPPVFAKKLTYPEPVTNHNFYDLKEAVLNGPDKWPGAHAIENEFGQIIA 560 Query: 409 -----------------------------WDILDEVIREHPVLLNRAPTLHRLGIQAFEP 439 + + V++NR PTLH+ + A Sbjct: 561 LRKKTYDERLALANQLLAPTNSYSNGARNKKVHRHLNNGDVVIMNRQPTLHKPSMMAHRA 620 Query: 440 VLIEG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEP 498 ++ G K I++H C YNADFDGD+M +H P A+ EA + + + LS G+P Sbjct: 621 RVLPGEKTIRMHYANCNTYNADFDGDEMNMHFPQNELARAEAMTIADTDHQYLSATAGKP 680 Query: 499 IIVPSQDVV-LGLYYMTRDCVNAKGEGMVL--TGPKEAERLYRSGLASLHARVKVRITEY 555 + QD + +G+ +D + E L + + E SG V + + Sbjct: 681 LRGLIQDHISMGVSISNKDTFFTREEYHQLLYSSLRPEEGHTTSGRLET---VSPAVLKP 737 Query: 556 EKDANGELVAKTSLKDTT----------------------VGRAILWMIVPKGLPYSIVN 593 G+ + T LK+ + ++ L I++ Sbjct: 738 RPMWTGKQIITTILKNIKPAEYQGLTLTSKSSTNGKLWGVHSEEQIVIVKDGHLLSGIMD 797 Query: 594 QALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEK---- 649 + A ++N Y G I S G++D+++ E+ Sbjct: 798 KGQIGPAAGGLINGIYEAYGETIAGRALSIIGRLLTKMLHMRAFSCGVEDLILTEEGDRA 857 Query: 650 KHEIISEAEAEVAEIQEQF--------QSGLVTAGERYNKVIDIWAAAN--DRVSKAMMD 699 + E + +AE EI ++ R V+ + D ++ Sbjct: 858 RLEELRKAEKLGFEIASKYVTLDAEKIDPTNPELRRRLEAVLRDDTKQHGLDLLTNTANS 917 Query: 700 NLQTETVIN-RDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM----------- 747 + + + K+ N + M SGA+GS Q++ G Sbjct: 918 KISSAVTAAVLPDKLIKKFPKNQMQAMTGSGAKGSMVNANQISCNLGQQVLEGRRVPVMI 977 Query: 748 ---AKPDGSIIE------TPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTR 798 P E I F G+ +Y+ R+GL DTA+KT+ SGYL R Sbjct: 978 SGKTLPCFKPFETSVRAGGYIVNRFLTGIRPQEYYFHMMAGREGLIDTAVKTSRSGYLQR 1037 Query: 799 RLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLG----------------- 841 ++ + L V D M + G D + + + L Sbjct: 1038 CIIKGMEGLRVEYDTSVRDADGTMVQFLYGEDGLDTTKQKYLNDFKFQAQNFYSLAQTLH 1097 Query: 842 ------RVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVC 895 RV + + ++ R + S + C Sbjct: 1098 TAEAYPRVASAEAVEHNKKAAKKARKGDVTSMDPATAVYTPSRHSGSTSELFLQAKREYC 1157 Query: 896 ------------AHCYGRDLAR-----------GHIINKGEAIGVIAAQSIGEPGTQLTM 932 G L R ++ GEA+GV+A QSIGEP TQ+T+ Sbjct: 1158 DTNPDKLLKLKKQDPEGEILKRTFEQMLDLKYLRSLVEPGEAVGVVAGQSIGEPSTQMTL 1217 Query: 933 RTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTK 992 TFH+ G +++ +++ +N+ + S+ + K Sbjct: 1218 NTFHLAGHSAKNVTLGIPRLREIVMTASANISTPSMQLYPHPELSKE------ECEKFAK 1271 Query: 993 ESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDE 1052 ++P AVL ++V ET T ++ + D T++ Sbjct: 1272 SITRLPLSAVL-----DKVTVTETFG-----TGTHYSQARSYKIRLDFYPMNEYTKE-YA 1320 Query: 1053 LTGLSSLVVLDSAERTAGGKDLRPALKIVDAQG 1085 + ++ K++R LK Sbjct: 1321 IKVRDVAESIEKKFCPRLHKEIRKDLKKKGENK 1353 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 69/230 (30%), Gaps = 52/230 (22%) Query: 1139 PRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNV 1198 P++ L A + I GI + K K + + Sbjct: 1523 PKLLMLHHVEEAANFATIHVIPGITAAQFSAKSK---------DVPENVINTEGSNLIAM 1573 Query: 1199 FE-GERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIV 1257 E G ++ +++ +LR+ GV A IV E+ +V+ G+ ++ +H+ + Sbjct: 1574 REYGHIIDVNRTLTN---DIAAMLRIYGVEAGRATIVREMHNVFSGHGISVDHRHLNL-- 1628 Query: 1258 RQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATE 1317 + G L G Sbjct: 1629 ------------------------------IADTMTKGGGFTPFSRIGLKG-------NV 1651 Query: 1318 SFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQ 1367 S SF+ T L +A + DEL+ ++VGRL GTG Sbjct: 1652 SPFMKMSFETTVGFLKDAVLERDWDELKNPSARIVVGRLGGIGTGAFDVL 1701 Score = 94.6 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 49/175 (28%), Gaps = 23/175 (13%) Query: 9 KAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDY 68 Q + + ++ + I++ S + P T + P GL + + + Sbjct: 3 THQPTSSAINGVEFGFLTTKDIKALSVKRISIPTTFDSIN-HPVPGGLHDPALGAFLDNP 61 Query: 69 ECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLL 128 C CG +T GHIEL P H+ F+ + LL Sbjct: 62 ----------------CATCG--LTTFLGCPGHCGHIELPVPVYHLTFMDQ----LLRLL 99 Query: 129 DMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAE 183 + + L R ++ E + G + A Sbjct: 100 RGTCAYCHHTKLARTTINEFVSKLRLIRCGLVQEANDMHLHITHGKGKTNDLDAP 154 >UniRef50_A0DJB3 DNA-directed RNA polymerase n=1 Tax=Paramecium tetraurelia RepID=A0DJB3_PARTE Length = 1696 Score = 538 bits (1386), Expect = e-151, Method: Composition-based stats. Identities = 207/1297 (15%), Positives = 426/1297 (32%), Gaps = 245/1297 (18%) Query: 273 INRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIK 332 + +++ +K L + + LQ+ V L+++ R R + +++ Sbjct: 450 LKQSDHMKNNLKKIIRLDTIMQKWLELQDCVVGLVNSERA----QNKQNRETPGVKQLLE 505 Query: 333 GKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLAT 392 KQG FR ++GKRV+++ RSVI+ P L ++ G+P +A +L P L + +A Sbjct: 506 RKQGLFRMKMMGKRVNFACRSVISPDPLLSTNEVGVPTVLARKLIIPENVNSLNQQYVAD 565 Query: 393 TIKAAK------------KMV-------EREEAVVWD--------ILDEVIREHPVLLNR 425 I K + ++ A+V + + + +L NR Sbjct: 566 LIMNGPVYPGALYFQEDGKKIALEYLTPQQRMAIVRELGSGENKVVWRHLRTGDVMLFNR 625 Query: 426 APTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 484 P+LH+ I ++ + I+ H C +YNADFDGD+M +H ++ + E + Sbjct: 626 QPSLHKPSIMGHIVRVLPNEQTIRFHYANCKSYNADFDGDEMNLHFIQSMIGRAEGYNIA 685 Query: 485 MSTNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVLTGPKEAERLYRSGLAS 543 ++ +S NG+P+ QD+++ ++T RD K + M L A + Sbjct: 686 LNDYQYISQTNGKPLRELMQDMIVSSVFLTLRDTFLTKQQYMQL--IYTAIWSLFEKNSQ 743 Query: 544 LHARVKVRITEYEKDANGELVAKTSLK---------------------------DTTVGR 576 ++ I + ++ G+ + +K Sbjct: 744 KIELLQPAILKPKQLWTGKQLISNIIKIIVGLNGYDPDIGLNLESKCKLSSKELPGMASD 803 Query: 577 AILWMIVPKGLPYSIVNQALGKK-AISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARS 635 I +I L IV++ A M++ + + G K T AY Sbjct: 804 DIQVLIKDNELLLGIVDKNQVGSGADYGMMHAFHELYGPKMTGQLLTGFARLFAAYLQYH 863 Query: 636 GASVGIDDMVI----PEKKHEIISEAEAEV------------------------------ 661 G + G+DD+++ EK+ +I E + Sbjct: 864 GFTCGMDDLIVDELHDEKRRVLIEENLKKGVRQAAEYCGYNSQIPESINLFNRSNFVFEN 923 Query: 662 ----------AEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDG 711 Q+ + A + + A D+ K M + +E V + G Sbjct: 924 GQYNHPKYLQDVHYLQYDHQIYEALRQKILIEKHQEEALDQEYKKAMTKVTSEIVGSTLG 983 Query: 712 QEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM--------------AKPDGSIIE- 756 +K N MM +GA+GS Q++ + G + P + Sbjct: 984 GLQKLFPLNLFSMMTMTGAKGSNVNHSQVSALLGQQELEGRRVPLMPTGRSLPSFLPYDP 1043 Query: 757 -----TPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTE 811 + F GL ++F R+GL DTA+KT+ SGYL R L+ + L+V Sbjct: 1044 NPRAGGYVADRFLTGLRPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLIVQY 1103 Query: 812 DDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADIL-------------- 857 D + + G D + + + L + + + Sbjct: 1104 DLTVRDNDGSLIQLFYGEDGIDTTKTKYLEKFSFLAQNNQHYKQLYRVQEMKQHFKTLDG 1163 Query: 858 --VPRNTLLHEQWCDLLEENSVDAVKVRSVVS-------CDTDFGVCAHCYGRDLAR--- 905 V + + ++KV+S ++ + ++ + LA Sbjct: 1164 ASVELENDTLMNAFNPSQNLGAVSMKVQSTMNEYLQKCQNELQQKKISNKQFKSLANIRY 1223 Query: 906 -GHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVK 964 +++ GEA+G +AAQSIGEP TQ+T+ TFH+ G + +++ K Sbjct: 1224 LRALMHPGEAVGCVAAQSIGEPSTQMTLNTFHLAGHGEKNVTLGIPRLREILMTATKKQK 1283 Query: 965 SVVNSSGKLVITSRNTELKLIDEFGRTKESYK-VPYGAVLAKGDGEQVAGG--------- 1014 + + L + N E D + + + + + +++ Sbjct: 1284 T---PTMSLQFLNANIEKSQADRYAKRMSKLVFLELVNNIKVREYKRLTENGIPLHSLLR 1340 Query: 1015 ETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDL 1074 + D + F D I + L + + ++ R Sbjct: 1341 GVIYEIDVELEDLNQIKYVFGISEDQIKNKVNHVFIPLLLKIIQAELNKNSSRCVEKTSF 1400 Query: 1075 RPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDI 1134 + + + + +L ++ + + + ++S DI Sbjct: 1401 LKTKENEAKKQRKGSDDEEEDDEDQQEEQDDLSELNQDEEVL--NIINQTFEQSAQQYDI 1458 Query: 1135 TGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLV-----------------I 1177 + + + + PK+ + + ++ + +++L+ + Sbjct: 1459 FEESHQQQESQKKQTPKKEQQQTPQTTQHKYLEKAEVQKQLIKVVIKLPLNSKKMLMTNV 1518 Query: 1178 TPVDGSDPYEEMIPKWRQLNVFEGE-----------------RVERGDVISDGPEAPHDI 1220 S+ I + + + + ++ D I+ +DI Sbjct: 1519 VKKTLSNTVINEIKGINKAKIIKNDKSGGASFMIYTEGVNLNKIRNFDFINLNNIDCNDI 1578 Query: 1221 LRLR---GVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEG 1277 + + G+ A I+ E+ V+ GV ++ +H+ +I M I Sbjct: 1579 VAIMNAFGIEAARNAIIKEILAVFGAYGVAVDYRHLYLIADYMTFGGQI----------- 1627 Query: 1278 EQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAV 1337 + NR + +F+ +T+ LT A + Sbjct: 1628 --------RAMNRIYMDFN--------------------TAPFGKMTFETSTQFLTNACL 1659 Query: 1338 AGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRA 1374 + D L +++GR+ G+ + Sbjct: 1660 NRETDTFNNLSSQLVIGRVPKVGSNLCDVLYQFETEE 1696 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 50/320 (15%), Positives = 98/320 (30%), Gaps = 56/320 (17%) Query: 14 TEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCG 73 T+ ++ + IR S E+ P+ + + P R GL+ + Sbjct: 21 TKRIQSVHFGYYTAKEIREMSVKEISNPKAFD-KLNHPIRGGLYDPALGV---------- 69 Query: 74 KYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLL----- 128 + RG C CG E +GHIEL P + + + L S + Sbjct: 70 ---QPHERGTRCVTCGQENMDCT---GHVGHIELLLPVYNPYLVNQLMSLMRSKCYYCHK 123 Query: 129 -------------DMPLRDIERVLYFESYVVI--------EGGMTNLERQQILTEEQYLD 167 + L + R++ + Y + + R+Q +T Sbjct: 124 LRITKDRKKFYKNNFKLLRLGRLIEMKKYQKLYMTKLRLNKQTKNAENRKQSITATDTSR 183 Query: 168 ALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAF 227 + D KM + A + +D+E +Q++E L+ + + + I Sbjct: 184 KGSDHRKGSDNKMQCDQETAPQEFLDIEDVKQQIQEILDILQVKKHQSEYIDGIHQTSHI 243 Query: 228 VQSGNKPEWMILTVLP-VLPPD--LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLD 284 +Q + P + P V +G R++ R N K + Sbjct: 244 LQELKILTKQFFKDINKKCPHCNKVSPNVRKEGVMKKE-------ARILKRTNNNKDRIR 296 Query: 285 LAAPDIIVRNEKRMLQEAVD 304 I + + ++ Sbjct: 297 RKIITQI---QWKFQSIYIN 313 >UniRef50_D0MYP8 DNA-directed RNA polymerase n=1 Tax=Phytophthora infestans T30-4 RepID=D0MYP8_PHYIN Length = 1811 Score = 534 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 210/1317 (15%), Positives = 408/1317 (30%), Gaps = 210/1317 (15%) Query: 117 LKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEF 176 +K+ G + R F + N + +T ++ Sbjct: 210 MKNKCENCGAISPAI-RQDANAKIFLKGLSARSRKVNRSKNLTVTSALDTIRGNVSDNKD 268 Query: 177 DAKMGAEAIQALLKSMDL---EQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNK 233 + G ++ L D ++ + L +++ + + + L + Sbjct: 269 ENMNGDDSESELEDDEDTYAATEDSSSRSKFLPPLEVQSQLQLMWQNEDGLMEMLYGDRN 328 Query: 234 P-------------EWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRL- 279 L V+PV P RP V + +F N +++ + + Sbjct: 329 IASGRVSGRKPDGWRKFFLNVIPVAPSRFRPPVFMGDKQF-EHAQNSHLSKIMTYSESIV 387 Query: 280 -----KRLLDLAAPDIIVRNE-----------KRMLQEAVDALLDNGRRGRAITGSNKRP 323 KR + + E LQ AV+ L+D+ + Sbjct: 388 QSDYYKRQAATTSDEDDAEKEEQVNLSRKLALWTELQNAVNLLVDSSK-----AKPGTDV 442 Query: 324 LKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYG 383 + + +I+ K+G FR++++GKRV+Y+ RSVI+ PY+ Q G+P + A L P Sbjct: 443 AQGIKQVIEKKEGLFRKHMMGKRVNYAARSVISPDPYISTSQIGVPLRFAKTLTYPQPVT 502 Query: 384 KLELRGLATTIKAAK------KMVEREEAV------------------------------ 407 + + + VE E Sbjct: 503 PWNVEEMRQLVINGPDVHPGSNFVESENGRLIDLSKRTPHQREAISKTLLTRSASAQGTS 562 Query: 408 ---VWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEG---KAIQLHPLVCAAYNADF 461 V + + VL+NR PTLH+ I A ++ + I++H C +NADF Sbjct: 563 KNRVKRVWRHLKTGDVVLMNRQPTLHKPSIMAHTARVLTNPKMQTIRMHYANCNTFNADF 622 Query: 462 DGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVV-LGLYYMTRDCVNA 520 DGD+M +H P A+ EA + + N + P +G P+ QD V G+ RD Sbjct: 623 DGDEMNMHFPQNELARSEAYNIASNDNQYIVPTDGSPLRGLIQDHVDSGVKLTQRDTFLN 682 Query: 521 KGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILW 580 K M L A + V I + E G+ V + LK T G L Sbjct: 683 KDMYMQLLYNAWASMEDSGVEKAHIETVPPAILKPEPLWTGKQVITSVLKLLTKGLPPLN 742 Query: 581 M---------------------IVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVI 619 + L +++++ ++ M++ CY + G + Sbjct: 743 LDSKAKIKGDLYGSANNEHVVIFRDGELLQGVLDKSQFGASMYGMVHACYEVYGARIAAD 802 Query: 620 FADQIMYTGFAYAARSGASVGIDDMVIP----EKKHEIISEAEAEVAEIQEQF------- 668 F + Y +G + ++D+ + +++ +++ ++E E +F Sbjct: 803 FLSALGRLFTCYLQFAGHTCAMEDLTLNIAAEKRRQKLVKDSEVMGEEAYAEFAGLTELL 862 Query: 669 --QSGLVTAGERYNKVIDIWAAANDRV------------SKAMMDNL--------QTETV 706 + AG++ + A DR+ +KA+ ++ Sbjct: 863 EKKRAGEKAGKKRRMNEEERAQIRDRMRTLLSGPDADYNAKALDAHMMGCVHGSNSDIIK 922 Query: 707 INRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM--------------AKPDG 752 + K N+ +M +GA+GS Q++ G + P Sbjct: 923 TCLPSGQSKAFPKNNFSLMVLTGAKGSMVNHSQISCGLGQQALEGRRVPILCSGRSLPSF 982 Query: 753 SIIE------TPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQD 806 + +T F GL +Y+ R+GL DTA+KT+ SGYL R L+ +D Sbjct: 983 EPFDPAPRAGGYVTDRFLTGLRPQEYYHHCMAGREGLVDTAVKTSRSGYLQRCLIKHLED 1042 Query: 807 LVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHE 866 L V D + + + G D +P++ +L K D + + Sbjct: 1043 LNVGYDHTVRNSDGGVIQFLYGEDGIDPVQSAML-------SGKDTQFDFQAMNHRSISH 1095 Query: 867 QWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEP 926 ++ + + K+ + V + ++ G + ++A + Sbjct: 1096 KYG--INAKFFEKTKLDIMKPLKLHQEVREAKENNYGSSSSLLKAG--VKIMARRL---- 1147 Query: 927 GTQLTMRTFHIGGAASRAAAESSIQ----VKNKGSIKLSNVKSVVNSSGKLVITSRNTEL 982 T G + I G ++K + + Sbjct: 1148 ---KQGETKWKRGNIELGFHAAEIVAVAGANEDGRECKYDIKYLDTGLKSFGVPRTAKFK 1204 Query: 983 KLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMID 1042 S +V ++ + V ++ H + + +R + + Sbjct: 1205 ATKPTNATRAMSGRVD---IIKVSLEDPVMQSLPLSE---HVGLISERIQDKLRNYNTRN 1258 Query: 1043 GQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLP 1102 + A +++ + V + + Sbjct: 1259 PSNCLELMKKKKKSKKSKKSKHAADDEVDREVMQSKHAVSPDA--FQLLVWVNYLRSMCA 1316 Query: 1103 GKAIVQLEDGVQISSGD---TLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEI 1159 V + I TL G ++T G+PR+ ++ K + I Sbjct: 1317 PGENVGILAAQGIGEPSTQMTLNTFHLAGHGAANVTLGIPRLREIIMTASQKMSTPMMTI 1376 Query: 1160 SGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE-------GERVERGDVISD 1212 + + R + E+I + V + G R I Sbjct: 1377 P----LRDDVESSRAQEVEQRLNQVALSELINNTNGVRVKDQFHSSENGILWVRDYQIRL 1432 Query: 1213 GPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNA 1269 +I R+ G+ A V+ G K + +I R+M + V+A Sbjct: 1433 SFFKLKEIKRVFGLSADQ---------VFNSVGRGFVGKLLTLISREMKKSGVTVSA 1480 Score = 99.2 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 29/198 (14%), Positives = 68/198 (34%), Gaps = 44/198 (22%) Query: 1176 VITPVDGSDPYEEMIPKWRQLNVFEG---ERVERGDVISDGPEAPHDILRLRGVHAVTRY 1232 +I G E+ + LN E + + + ++ + +L+ GV A Sbjct: 1653 LINQRIGEAQEEKPCVQTEGLNFQEIWGFDHILDVNNLAT--NDIYQVLQTYGVEAARAS 1710 Query: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANREL 1292 I ++ +V+ + G+ ++ +H + + + Sbjct: 1711 ISKQIMEVFGVYGISVDPRH--------------------------------LSLLADYM 1738 Query: 1293 EANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVI 1352 A G +G+ S + +F+ + + L++AA+ G D+L ++ Sbjct: 1739 TAQGGYMPLNR---MGMN----NKGSSLQQITFETSMKFLSQAALGGLVDKLESPSARIV 1791 Query: 1353 VGRLIPAGTGYAYHQDRM 1370 +G+ GTG + Sbjct: 1792 LGQPPRVGTGSFSLLQPI 1809 Score = 86.9 bits (213), Expect = 6e-15, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 59/210 (28%), Gaps = 24/210 (11%) Query: 15 EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74 E + S IR S ++ + + P GL+ + Sbjct: 12 HEVAEVAFGFYSDAEIRDLSVKQLTSRLSFDS-LNNPVVGGLYDPALGP----------- 59 Query: 75 YKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRD 134 +IC C + +GHIEL P + + LL Sbjct: 60 ----VDFNMICPTCHQTQKECP---GHLGHIELPVPVYNPVLFGQ----MLNLLKRKCFT 108 Query: 135 IERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDL 194 + + + L E L L E + + + Q +D Sbjct: 109 CHKFRVASARSRVVRVKILLLDNGFDNEAGQLGELLEQRNGVEDEPPQRTFQRQQAILD- 167 Query: 195 EQECEQLREELNETNSETKRKKLTKRIKLL 224 E E L + + TN +T+ + R+ + Sbjct: 168 EYERLALSKSITSTNGKTQLLRPLPRVAEV 197 >UniRef50_B0XG16 DNA-directed RNA polymerase n=3 Tax=Diptera RepID=B0XG16_CULQU Length = 1692 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 176/1082 (16%), Positives = 326/1082 (30%), Gaps = 194/1082 (17%) Query: 1 MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60 M + T ++ A+ S + I+ S ++ P + + GL+ A Sbjct: 1 MTIDQNLEVSLDPTN----LQFAVFSDEDIKRMSVTKIVTPRSFD-DLGNSIPGGLYDAA 55 Query: 61 IFGPVKDYECLCGKYKRLKHRGVI-------------------------CEKCGVEVTQT 95 + + C + G C C Sbjct: 56 MGPSGRSEVCATCVKDMAQCEGHFGHIEICLPVFNPFFIKTVYNLLRISCNACHRLQMSD 115 Query: 96 KVRRERM--------GHI----EL----ASPTAHIW--FLKSLPSRIGLLLDMPLRDIER 137 ++ G+I EL A A+ +++ LL++ P + Sbjct: 116 PLKELLQLQLQLVDAGYIVEAEELEMFKAKVCANPTEPLPEAVAYYSELLMNHPYNKLAN 175 Query: 138 VLYFES--YVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKS---- 191 E+ ++ + + R+ ++ ++ + + M ++A + Sbjct: 176 TKNSEAIRTSIVNSTLRDCVRKICISCKEAIQKVRVSNKRLVFSMTRAEMRAFYEKQGKT 235 Query: 192 -MDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSG--------NKPEWMILTVL 242 + E+ ++ L E ++ R+ KLL + + + V+ Sbjct: 236 EIPDEKTKATVKVVLAEEAQKSFRELYANDGKLLTLLFPIMATSSATMRHPVDLFFMNVI 295 Query: 243 PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLL------------------- 283 PV PP +RP+ ++G + R ++ N L+ +L Sbjct: 296 PVQPPLVRPVRRVEGQEILEHPQTTILRNILMANAVLRSILVMSTKDDEALGAMDVEMKK 355 Query: 284 -----DLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRF 338 + LQ VD LD G L +I+ K+G Sbjct: 356 VYESAKGGTGLEKLYLAWIDLQNFVDQSLDINMSQEKQKGRGC----GLKQIIEKKEGLV 411 Query: 339 RQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAA- 397 R +++GKRV+Y+ R+VIT P + + + G+P A L P + L + Sbjct: 412 RMHMMGKRVNYAARTVITPDPNIGVDEIGIPITFAKRLTYPVPVTPWNVAELRKMVINGP 471 Query: 398 -----KKMVEREEAVV-----------------------------WDILDEVIREHPVLL 423 MVE V + ++ +LL Sbjct: 472 DGYPGANMVEDSNGQVSRISGHNATHRESMAKTLLTPHSSNQQGVKIVHRHLLSGDVLLL 531 Query: 424 NRAPTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARA 482 NR PTLHR I A + ++ G K +LH C +YNADFDGD+M H P + A+ EA Sbjct: 532 NRQPTLHRPSIMAHKAKILPGEKIFRLHYSNCKSYNADFDGDEMNAHFPQSELARSEAYN 591 Query: 483 LMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLA 542 L+ + L P +G P+ QD ++ + + + Sbjct: 592 LVAVPHQYLVPKDGTPLGGLIQDHIVSAVKLFIRGKFFNRDDYQQLVFQALSNHRGDIEL 651 Query: 543 SLHARVKVRITEYEKDANGELVAK------------------TSLKDTTVGRAIL----- 579 +K K +V T R Sbjct: 652 LPPTILKPARLWSGKQIISTIVKNIIPRGMPHINMIGTSKLGNKHWQTAPPRPWTAGGTP 711 Query: 580 ----------WMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGF 629 I L I+++ +++ Y + G + + + Sbjct: 712 LTGNQMSESEVFIRNGELLVGILDKNHFGATPYGLIHCMYELYGGNCSTLLLSSLSRLFT 771 Query: 630 AYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSG-------------LVTAG 676 Y G ++G+ D+++ ++ + ++ E +I + Sbjct: 772 YYLQWEGFTLGVRDILVQKQADKKRTKIIQECRKIGHSAAAAALDLPPDVSPEVLNAKME 831 Query: 677 ERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQ 736 E Y K A + + A+ + N++ +M SGA+GS Sbjct: 832 EAYAKDPKFRAILDRQYKSALDPFNNQINEACIPDGLISKFPDNNLQLMVQSGAKGSTVN 891 Query: 737 IRQLAGMRGLMAKPDGSI--------------------IETPITANFREGLNVLQYFIST 776 Q++ + G + I F G+ +F Sbjct: 892 TMQISCLLGQIELEGKRPPLMISGKSLPSFASFETSPKSGGFIDGRFMTGIQPQDFFFHC 951 Query: 777 HGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLR 836 R+GL DTA+KT+ SGYL R LV + L V D + + G D + + Sbjct: 952 MAGREGLIDTAVKTSRSGYLQRCLVKHLEGLNVNYDMTVRDSDNSVVQFMYGEDGMDISK 1011 Query: 837 DRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCA 896 + + + + D +V D L E +K + V Sbjct: 1012 AQFI-ETSKQLRFLDLNRDAIVRPEITKKLVNEDDLNEQIKAHLKKVKAWNKKQGSLVQK 1070 Query: 897 HC 898 Sbjct: 1071 RK 1072 Score = 139 bits (349), Expect = 8e-31, Method: Composition-based stats. Identities = 82/603 (13%), Positives = 174/603 (28%), Gaps = 90/603 (14%) Query: 836 RDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVC 895 + + P ++ C ++ + S T + Sbjct: 1112 KKWYKMDPEVKAKFLRKHPRCPDPLFSVFRPDSCFGALTEHLEELVKNYENSQQTPQDMS 1171 Query: 896 AHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNK 955 ++ G + GE +G++AAQSIGEP TQ+T+ TFH G +++ Sbjct: 1172 QLMKIKNS--GALAAPGEPVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREI 1229 Query: 956 GSIKLSNVKSV---------VNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKG 1006 + N+K+ ++ I R E KV VL Sbjct: 1230 LMLASRNIKTPSMEIPFKPHKSAKKLEAIAERMRRTLNRVTVADVLEDIKVKSRLVLRPS 1289 Query: 1007 DG-EQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSA 1065 G + V + D + + + + + R + + + V+++ A Sbjct: 1290 RGMQHVIRFSFLP-PDAYQHDYRVGPKEILHYMSRNFFRHMFRIIFK-SAKTKNVLIEIA 1347 Query: 1066 ERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGV-QISSGDTLARI 1124 + ++ + + V DM +D + GD A Sbjct: 1348 QESSKKDAADSSGGGPEIDEQAVDSHEPDMSRLKEADDGDASSEDDEDGNANEGDADATE 1407 Query: 1125 PQESGGTKDITG----------------GLPRVADLFEARRPKEPAILAEISGIVS---- 1164 + D G P + E + K Sbjct: 1408 SRRKNKKSDDVGYESEEDDDDGEEDEMPNSPEGEENAEGQAAKGEEEGEGGEEKDEALDV 1467 Query: 1165 --FGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNV-----FEGERVERGDVISDGP--- 1214 ++ LV D Y +R + V + + ++ ++ + Sbjct: 1468 SDIQLNEDTEKMLVTKQSDMISDYTYDKEHFRWVQVSFHMPMKYKDIDFTKILREISEKC 1527 Query: 1215 --------------------------EAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKI 1248 + + + + R N++ V + G++ Sbjct: 1528 VVWEVPNIRRAITFRQNDQLHLKTDGINVFAMTKYAEILDLNRMYSNDIYAVAQTYGIEA 1587 Query: 1249 NDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLG 1308 + VIV+++ + G ++ + + + A+G + Sbjct: 1588 ASR---VIVKEVQNVFKV---------YGIEINPRHLLLVADYMTADGTFKSLSR----- 1630 Query: 1309 ITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD 1368 K A S + SF+ + + L A + G D L ++VG+L +GTG + Sbjct: 1631 --KGMEANVSPLQQISFESSIQFLKAATLKGNGDHLDSPSSRLMVGKLCKSGTGSFGLYN 1688 Query: 1369 RMR 1371 +++ Sbjct: 1689 QIK 1691 >UniRef50_A8J568 DNA-directed RNA polymerase (Fragment) n=1 Tax=Chlamydomonas reinhardtii RepID=A8J568_CHLRE Length = 1515 Score = 527 bits (1358), Expect = e-148, Method: Composition-based stats. Identities = 171/884 (19%), Positives = 293/884 (33%), Gaps = 159/884 (17%) Query: 234 PEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL----------- 282 + L LPV P RP + G N + ++IN + L Sbjct: 466 YKMFFLRCLPVAPNKFRPPSKV-GDELYEHAHNVILAKIINSSLELSSGPRAVDAAARTQ 524 Query: 283 -------LDLAAPDIIVR-NEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGK 334 AA D+ R LQ V AL+D+ +K + + ++ K Sbjct: 525 GGTGADPAQAAAMDLSRRVATWLALQNHVCALMDST----TAEDLDKSGAQGIRQQLEKK 580 Query: 335 QGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI 394 +G FR+N++GKRV+++ RSVI+ PY+ + G+P A L P + L + Sbjct: 581 EGLFRKNMMGKRVNFAARSVISPDPYIGAGEIGVPPYFAKRLSFPERVTPFNVERLRAAV 640 Query: 395 KAAK---------------KMV-------EREEAVVWDILDEVIREHPVLLNRAPTLHRL 432 A +M+ ER +AV ++ +L NR PTLH+ Sbjct: 641 IAGAHQHPGAVAVEDVTTGRMIQLGNLPLERRQAVAKQLMSSTADGDLMLTNRQPTLHKP 700 Query: 433 GIQAFEPVLIEG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNIL 491 G+ A +++G + I++H C+ +NADFDGD++ +H+P + E ++ + + Sbjct: 701 GLMAHRARVLKGERTIRMHYANCSTFNADFDGDEINLHLPQDQLGRSEGYVIVHADQQYI 760 Query: 492 SPANGEPIIVPSQDVVLGLYYMTRD-CVNAKGEGMVLTGPKEAERLYR----------SG 540 P +G+PI QD V+ +T+ E L +G Sbjct: 761 VPTDGKPIRGLIQDHVVAATLITKRGTYFTADEYRQLVYIACTPWATGKARPKVTVTAAG 820 Query: 541 LASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWM------------------- 581 + + + +G+ V T + T G L Sbjct: 821 SSFDIDLEPPCTLKPRQLWSGKQVVSTVISFFTRGLPPLSFSAGGKVPASYWGAGSGEDE 880 Query: 582 --IVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASV 639 L +V++ K +++ + G Y G + Sbjct: 881 MQFHRGALVRGVVDKNAFGK--YGLVHAVQELYGNTTAGKLLSAFSRLFTYYLQWHGFTC 938 Query: 640 GIDDMVIPE-----------------------------KK-----------HEIISEAEA 659 G+DD+++ KK E++++ + Sbjct: 939 GMDDLLLVPGSEARRAALLATAEARAVQASSELLVDKDKKGAKGSAGEGLPAELLADPAS 998 Query: 660 EVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSF 719 ++ GERY D A + + S AM + G + K Sbjct: 999 HARQLLHYEIKVSAELGERYRTNRDTGKAHDMKGSGAMHALSSEVIKVCLPGGQAKAFPQ 1058 Query: 720 NSIYMMADSGARGSAAQIRQLAGMRGLMA--------------------KPDGSIIETPI 759 N + +M +GA+GS Q++ + G G I Sbjct: 1059 NCLSLMTITGAKGSLVNFSQISCLLGQQELEGRRPPRMASGKTLPCFRPYDGGGRSNGFI 1118 Query: 760 TANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHE- 818 F GL +Y+ R+GL DTA+KT+ SGYL R LV + L V D Sbjct: 1119 GDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLESLRVHYDGTVRDNC 1178 Query: 819 GIMMTPVIEGGDVKEPL---RDRVLGRVT-AEDVLKPGTADILVPRNTLLHEQWCDLLEE 874 + G D + + R G + D + + ++ Sbjct: 1179 DASIVQFAYGEDGLDVMSVSYMRQFGFLARNADRFSQLAFADALRAYVAANPDGALQAQD 1238 Query: 875 NSVDAVKVR-------------SVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQ 921 + + G + GEA+GV+AAQ Sbjct: 1239 AGAKKDGKKDRKKDKELVAAGGRHGGKGSVDGPLFGQLMMLKYMRSLAAAGEAVGVLAAQ 1298 Query: 922 SIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKS 965 S+GEP TQ+T+ TFH+ G +++ +K+ Sbjct: 1299 SVGEPSTQMTLNTFHMAGRGEANVTLGIPRLREILMTAAPRIKT 1342 Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 41/150 (27%), Gaps = 35/150 (23%) Query: 8 LKAQTKTEEFDAIKIALASPDM------------IRSWSFGEVKKPETINYRTFKPERDG 55 + T++ A++ S D +R S + P + P +DG Sbjct: 5 PAKEVTTKQVAAVRFGFYSEDEHYAKQSHAVRLQVRKLSVVNITCPLIFD-DAKVPVKDG 63 Query: 56 LFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIW 115 L+ R+ +KCG + G IEL P + Sbjct: 64 LYDPRMGPTDSR------------------DKCGTCLLSHDRCPGHFGRIELPVPVYNPL 105 Query: 116 FLKSLPSRIGLLLDMPLRDIERVLYFESYV 145 K + LL R + V Sbjct: 106 VFK----VMYKLLRCTCLHCHRFKLSQDTV 131 >UniRef50_UPI0001926746 PREDICTED: similar to polymerase (RNA) I polypeptide A, 194kDa, partial n=1 Tax=Hydra magnipapillata RepID=UPI0001926746 Length = 1620 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 184/1089 (16%), Positives = 343/1089 (31%), Gaps = 235/1089 (21%) Query: 16 EFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKY 75 ++ + + IR + ++ PET + P + GL+ + Sbjct: 5 RIYSVYFTAHNAEEIRKLAIKKIDNPETFDL-LRHPNKGGLYDLALGP------------ 51 Query: 76 KRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRI--GLLLDMPLR 133 + IC+ C + + G+IEL P H F K + S + Sbjct: 52 ---NEKDDICDTCSLGHIKCP---GHFGYIELPLPVYHPMFFKLMISILRGSCFNFKECP 105 Query: 134 DIERV-----------LYF-----------------------ESYVVIEGGMTNLERQQI 159 + LYF S + E +Q Sbjct: 106 HCTMIKRDIRSEYNIRLYFSSASQKSIQKAIHDLKNLKPEIKPSKIEDNFPDEEDEEEQN 165 Query: 160 LTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTK 219 + D + + K G +I + ++ E + L E + + KK Sbjct: 166 NDDFDEDDYCPKLQNRKKNKSGNSSIVKENFKENEDRYNEYKKLGLEEYITPEEVKKHLI 225 Query: 220 RI---------KLLEAFVQSGNK-----PEWMILTVLPVLPPDLRPLVPLDGGRFATSDL 265 + L +F + PE L V+ V P RP+ D +F + Sbjct: 226 ELWNTEYSVLNALFGSFNSPSCQSRQTSPEMFFLDVIAVPPSKFRPMSYRDEKKF-ENPE 284 Query: 266 NDLYRRVINRN-------NRLK-----------------------RLLDLAAPDIIVRNE 295 + +++ NRLK +++ ++ ++N Sbjct: 285 TENMCKILWNCKFIHELLNRLKLPTDDKPYVPVAFVSTSVSQSKRKVIPGSSHKEQLQNA 344 Query: 296 KRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVI 355 LQ +V+ L+DN + + + + +++ K+G FR+N++GKRV+++ RSVI Sbjct: 345 WEELQSSVNTLMDNTLNKL-----DNKNIPGIRQLLEKKEGLFRKNMMGKRVNFACRSVI 399 Query: 356 TVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI------KAAKKMVEREEAVV- 408 + P++ + + G+P A +L L L + MVE E+ Sbjct: 400 SPDPFINMDEVGIPLVFAKKLTYVQPVTTWNLSKLKQMVINGPNKWPGATMVEYEDGRKT 459 Query: 409 -----------------------------------WDILDEVIREHPVLLNRAPTLHRLG 433 + +I +LLNR PTLHR Sbjct: 460 ILSDDEYERRAVAKQLLSSSHENNLKIGRTKNYQSKKVYRHLIDGDVLLLNRQPTLHRPS 519 Query: 434 IQAFEPVLIEG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILS 492 I A + ++ + +++H C +YNADFDGD+M H P + EA L+ + N LS Sbjct: 520 IMAHKAKVLTNERTLRMHYANCKSYNADFDGDEMNAHFPQNELGRSEAYNLVSTHYNYLS 579 Query: 493 PANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRI 552 P +G+P+ QD ++ +MT K + +K Sbjct: 580 PKDGKPLAGLIQDHIVSGVWMTSRDKFFKRDEYQQLIFNALIDSPNKIKTLPPCIIKPVP 639 Query: 553 TEYEKDANGELVAKTSLKDTTVGRAILW------------------------------MI 582 K ++ +I Sbjct: 640 LWSGKQIFSSVLLNIIPDGLIPLNMTGNKAKLTDSNWAKDNKVLGCSDKDPFLTEGQVII 699 Query: 583 VPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGID 642 L I+++ +++ Y + G K + + + AY +G S+GI+ Sbjct: 700 RGGELMTGILDKTQYGSTQFGLVHCVYELYGGKISGLLLSVLARLFTAYLQHTGFSLGIE 759 Query: 643 DMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAA----------NDR 692 D+++ K E E ++ + ER + A D Sbjct: 760 DILVFPKSDAKRKEIIDEGKRCGDESAMEALNVKERDQLEECLQKAHFTNKGVELAQLDL 819 Query: 693 VSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDG 752 K D + + K+ N++ +M SGA+GSA Q++ + G + Sbjct: 820 SMKTRTDKITNKINSECINGLLKKFPENALQLMVQSGAKGSAVNCTQISCLLGQIELEGR 879 Query: 753 S----IIETPITANFREGLNVLQYFISTHGAR---------------------------- 780 I + P+ + LN + R Sbjct: 880 RPPLTISDWPVLS---PDLNSNENVWGILAKRVYGKQFSNVNELKKAIVHVWKNISLADV 936 Query: 781 ------------KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEG 828 +GL DTA+KT+ SGYL R L+ + L V D + + G Sbjct: 937 RKHLESAPNQLFEGLVDTAVKTSRSGYLQRCLIKHLEALRVEYDMTVRDGDGSVIQFLYG 996 Query: 829 GDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSC 888 D + L+++ L + +++ A ++ + + + + Sbjct: 997 DDGIDVLQNQFLKKEQYTTIIQNYKAYEMLLKPLEMQKHVDLTKAMKIQKKCYRWKKHNG 1056 Query: 889 DTDFGVCAH 897 +C+H Sbjct: 1057 IPFSSLCSH 1065 Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 52/111 (46%), Gaps = 4/111 (3%) Query: 859 PRNTLLHEQWCDLLEEN-SVDAVKVRSVVSCDTDFGV---CAHCYGRDLARGHIINKGEA 914 + E++ D L+E ++ + S + + + + + +++ GEA Sbjct: 1159 CYFGSVSEKFRDELDEYIRLNPDSILSDNNEENERKISPETFRPFMYAKYLRSVVHPGEA 1218 Query: 915 IGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKS 965 +G++A+QSIGEP TQ+T+ TFH G + +++ N+++ Sbjct: 1219 VGLLASQSIGEPSTQMTLNTFHFAGQSDMNVTLGIPRLREILMTASENIQT 1269 >UniRef50_D2VD58 DNA-directed RNA polymerase subunit A n=1 Tax=Naegleria gruberi RepID=D2VD58_NAEGR Length = 1755 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 226/1460 (15%), Positives = 455/1460 (31%), Gaps = 246/1460 (16%) Query: 132 LRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKS 191 + IE+ + + E + + D + + D A+ +L Sbjct: 314 KKRIEKPFCLANNFHLMTTKILKETTSLFYNYLHTDEVVDMLDRVYYNGIETALNEVLFK 373 Query: 192 MDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRP 251 MD+ E E L + + + + + + + I L +F + P M + V+P RP Sbjct: 374 MDINNEEEHLFDLIAGSIQDNRIRYMDSYI--LHSFFDN--SPALMFTKKVLVMPVRFRP 429 Query: 252 LVPL------DGGRFAT---SDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNE------K 296 + PL +G T +D++ Y V+ +L + +R++ Sbjct: 430 ISPLHIAAKEEGKTMVTYVKTDIDIHYINVLKT-KKLYEDIQAKLGTSTIRSDNTAIAVL 488 Query: 297 RMLQEAVDALLDNGRRGRAITGS------------NKRPLKSLADMIKGKQGRFRQNLLG 344 R LQ ++ +LD+ + + + + ++ K G RQ+++G Sbjct: 489 RALQCYINDMLDSTSNTSSGSNRFYSSLLKKKKTSTTTLNRGMKQLMDKKAGLVRQSMMG 548 Query: 345 KRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVERE 404 KRV+YS R+VI + ++ P A ++ + + + K Sbjct: 549 KRVNYSARTVILPDVAIACNEVSFPAMFAKKMTFMETVTNFNINKMRELVINGAKQYPGA 608 Query: 405 EAVVWD----------------------------------------------ILDEVIRE 418 +V + + Sbjct: 609 NQIVKSGKTQSDVSSSTAVAPYTRPPLSIQLNVVKSKKQRVAMANQLQVGDVVYRHLQDG 668 Query: 419 HPVLLNRAPTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQ 477 +L+NR P+LHR I A +I + ++LH C ++NADFDGD+M H AQ Sbjct: 669 DMLLMNRQPSLHRPSILAHRARVIANQRVMRLHYASCKSFNADFDGDEMNAHFVQNPIAQ 728 Query: 478 LEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVLTGPKEAERL 536 EAR LM + + +P +GEP+ QD V +T +D ++ + + + Sbjct: 729 SEARQLMDAQLSFCTPTSGEPLRGLIQDHVSSAVLLTMKDNFLSREDYQEILLSANIFDV 788 Query: 537 YRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAIL----------------- 579 + + + +K K L+ + K+T G + Sbjct: 789 NEVIRSEIPSILKPTPLWTGKQVITSLLKHVAKKNTPAGAPVFGVNLDCKTKVKGTVWGA 848 Query: 580 ------WMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAA 633 +I L I +++ + +L+ G + + + Y Sbjct: 849 HNEEGMVIIRDNELLTGIFDKSQVGSSKYGILHAFDECYGNNASNMLISCLSRMLTFYLH 908 Query: 634 RSGASVGIDDMVIPEKKH----EIISEAEAEV-------------------------AEI 664 S GIDD ++ + E + + + Sbjct: 909 YFAISCGIDDCLLSKSAEANRIETLKNSNEACHHATASYCGLPKKKDASQYDHDKVKEFL 968 Query: 665 QEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYM 724 + + V+ I + V K++ + + K +N + + Sbjct: 969 AKHMLNPTVSKQTGEIINEKIVRKLDSTVKKSINKFTTKAINDSIPMGQYKAFPYNMLSL 1028 Query: 725 MADSGARGSAAQIRQLAGMRGLM---------------------AKPDGSIIETPITANF 763 M ++GA+GS Q+A GL + +I + + F Sbjct: 1029 MTETGAKGSMVNSSQIAVCLGLQEFEGKRVNVQVKSGKTLPSFDSFDSNNIANGYVASRF 1088 Query: 764 REGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMT 823 G+ ++F R GL DTA+KTA SGYL R L+ +DL V D + + Sbjct: 1089 LTGIKPQEFFFHCMAGRDGLIDTAVKTARSGYLQRCLIKHLEDLSVQYDGTVRNGNKTVV 1148 Query: 824 PVIEGGDVKEPLRDRV-----LGRVTAEDVLKPGTADILVPRNTLLHE------------ 866 GGD +P++ R+ + + + + + + E Sbjct: 1149 QFSYGGDHIDPIKTGYMTQFDFMRMNQDLLSQRYNEESAIQYTKDVKEWQEKTKNATSTI 1208 Query: 867 -------------------QWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLAR-G 906 D + ++A K ++ F L Sbjct: 1209 YKNDFVQIEDPWNYLGGVSDAYDKKLKKYIEATKTTTLSDTKKKFDPERIKTLAHLKYLR 1268 Query: 907 HIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSV 966 ++N + +G+IA QSIGEP TQ+T+ TFH G ++ + V + Sbjct: 1269 SLVNASDPVGIIAGQSIGEPSTQMTLNTFHFAGLDMAHVTVGIPRLVELLMRGTTRVLT- 1327 Query: 967 VNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQ-------VAGGETVAN 1019 + + + ++ + K+P+ VL D ++ V + + Sbjct: 1328 ----MNVPVKKECAQYQVEKIYQYADSISKLPFFRVLTNMDIQEQFKFSVDVKRKQISVS 1383 Query: 1020 WDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALK 1079 + D + T + L+ + Sbjct: 1384 LFFDMKDITEYYQISNDVFDKKVQTLLILLTARIVSPKKLMYSRMKAMLSKLASFGGTGA 1443 Query: 1080 IVDAQGNDVLIPGTDMPAQ--------------YFLPGKAIVQLEDGVQISSGDTLARIP 1125 + D P + A ++ V+ + S Sbjct: 1444 VADGAAPAEAEPEENKEATPMDAFMGTDTAEMMKEDSDESNVKKPKKKKKKSDSDDEDED 1503 Query: 1126 QESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFG---------KETKGKRRLV 1176 + + + + + E + + + E I +FG + + Sbjct: 1504 NDEDEEEKRSKRKKKRDEEEETQINNDEGLSGEDLFIKTFGSALGEYDEHSINAKEGVVT 1563 Query: 1177 ITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRY---- 1232 T SD + I + Q +V + ++ D I + P + + Y Sbjct: 1564 FTFTQKSDAGKVYIAEGIQ-DVLKNCFLQSVDGIENVTVVPTNDGYDLSIEGFNFYALHA 1622 Query: 1233 --IVNEVQDV--YRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIA 1288 + +E+ D+ V I + H + + + + + G +V + +++ Sbjct: 1623 LPMSHELLDLNRLVTNNVNIMNDHYGI---ESGYGLIVKDVSYVFDMYGMEVSPAHIQLI 1679 Query: 1289 NRELEANGKVGATYSRDLLGITKASL-ATESFISAASFQETTRVLTEAAVAGKRDELRGL 1347 L Y + ++ + S +SF++ + L +AAV + D + Sbjct: 1680 ADYLT--------YRGYYSSCNRFTIKNSPSTFYRSSFEQACQNLLKAAVRSETDTMVSP 1731 Query: 1348 KENVIVGRLIPAGTGYAYHQ 1367 V +G + GTG Sbjct: 1732 TARVALGTPVSVGTGSFDLL 1751 Score = 90.3 bits (222), Expect = 5e-16, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 75/216 (34%), Gaps = 28/216 (12%) Query: 18 DAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKR 77 +++ S + I S EV T + P R L+ ++ D Sbjct: 7 KSLQFKFYSDEDIEKLSVLEVDNAITHD-EFQIPVRGSLYDPKMGLRDNDGPMA------ 59 Query: 78 LKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLR---- 133 CE CG+ T GHI + P ++ + + L + Sbjct: 60 ------RCETCGLVNTFCP---GHFGHISIPQPVFNVLLKTDVTQVMNLCCPFCEKLHIP 110 Query: 134 DIERVLYFESYVVIEGGMTNL-----ERQQILTEEQYLDALEEFGDEFDAKMGAEAIQAL 188 E+ + + +++ G+ + ++ + + + EE E +A+ G + + Sbjct: 111 KEEKTILYLVLRLLDCGLPSEAMELNDKPLMFLRKYGNEQEEEPMSEEEAEEGKKKKKKK 170 Query: 189 LKSMDLEQE---CEQLREELNETNSETKRKKLTKRI 221 K +DLE E E ++L T ++++ K Sbjct: 171 KKKLDLETEHYRFEDDYQKLVSTTLGLIQQQILKYD 206 >UniRef50_B8M0T3 DNA-directed RNA polymerase n=3 Tax=Eurotiomycetidae RepID=B8M0T3_TALSN Length = 1689 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 173/1054 (16%), Positives = 334/1054 (31%), Gaps = 179/1054 (16%) Query: 217 LTKRIKLLEAFVQS-----GNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRR 271 L ++ K + V S P+ + + + V P RP GG+ + N + + Sbjct: 330 LFEKEKEILNLVYSSRLGFKISPDMLFVRNILVPPNRFRPPAQ-QGGQIMEAQQNTPFTQ 388 Query: 272 VINRNNRLKRLL----DLAAPDIIVRNEKRMLQ------EAVDALLDNGRRGRAITGSNK 321 ++ + + + +R + +LQ E V+ L+D+ R + + Sbjct: 389 ILKTCDLINMISHSRQTAETEGTRMREYRDLLQAIVTLQEQVNTLIDSDRGPGGMAAA-- 446 Query: 322 RPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFI 381 R + +++ K+G FR+N++GKRV+Y+ RSVI+ P L H+ G+P A +L P Sbjct: 447 RQANGVKQLLEKKEGLFRKNMMGKRVNYAARSVISPDPSLETHEVGVPMVFAKKLTFPEP 506 Query: 382 YGKLELRGLATTIKAAKKM------VEREEAVV--------------------------- 408 L + +E E V Sbjct: 507 VTSFNFHELREAVINGPDKYPGASAIENESGQVVNLKFKTLDERTALANQLLAPSHAKMK 566 Query: 409 ----WDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAYNADFDG 463 + + V++NR PTLH+ + ++ + ++L +YNAD+DG Sbjct: 567 GNRNKKVYRHLTTGDYVIMNRQPTLHKPSMMGHRARVLPNERVLRLPYPNTNSYNADYDG 626 Query: 464 DQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKG 522 D+M +H P A+ E + + +S +G+P+ QD + ++T RD + Sbjct: 627 DEMNMHFPQNTIARAELSMITDADRQYISSTDGKPLRGLIQDHITVSTFLTSRDTFFEED 686 Query: 523 EGMVLTG----PKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDT------ 572 E L P+ A + A ++ R K ++ + Sbjct: 687 EYQQLLYSCLRPENANTVTDRIQLVEPAFIRPRRLWTGKQVISTVLKNIMPPNRRGLNLQ 746 Query: 573 -----------TVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFA 621 + L I+++ + ++ + I G Sbjct: 747 GKSSTPGERWGKDNEEDSVIFKDGELLCGILDKKQIGASGGGFIDAIHEIYGNAIAGSLL 806 Query: 622 DQIMYTGFAYAARSGASVGIDDMVIPE----KKHEIISEAEAEVAEIQEQF-----QSGL 672 + + S GI+D+ + K+ +I+ +A + ++ Sbjct: 807 SILGRLLTRFLNMRAFSCGIEDLRLTPEGDRKRVDILEKAATLGRNVSLKYVTLDQNPAA 866 Query: 673 VTAGERYNKVIDIWAAAN-----DRVSKAMMDNLQTETVI-NRDGQEEKQVSFNSIYMMA 726 E ++ D+ D V + L ++ KQ +N + +M Sbjct: 867 DQDAELRRRLEDVLRDDQKQSGLDSVYNSQTRKLTSDIAASCLPHGLIKQFPWNQMQLMT 926 Query: 727 DSGARGSAAQIRQLAGMRGLM--------------AKPDGSIIE------TPITANFREG 766 +GA+GS+ ++ G P E + F G Sbjct: 927 TTGAKGSSVNANLISCNLGQQVLEGRRVPVMVSGKTLPSYRAFETHPQAGGYVCGRFLTG 986 Query: 767 LNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTH--EGIMMTP 824 + +Y+ T R+GL DTA+KTA SGYL R L+ + + V D G + Sbjct: 987 IKPQEYYFHTMAGREGLIDTAVKTAKSGYLQRCLIKGMEAVKVEYDSSVRDTANGGSVIQ 1046 Query: 825 VIEGGDVKEPLRD---------------------------------------------RV 839 I G D + + R Sbjct: 1047 FIYGEDGLDVGKQVHLQNFSFLANNYVSTMAQLNMTQDFHALEKPEVLQWHKDAMKQVRK 1106 Query: 840 LGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCY 899 GR+ A+D + E + L++ G + Sbjct: 1107 TGRLDAKDPTLAVY--QPGGHYGSVSEAFSLALKKYEERNPDKLLKDKKAGITGALSKKA 1164 Query: 900 GRDLAR----GHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNK 955 + +I+ G+A+G++A QSIG TQ+T+ TFH+ G ++R +++ Sbjct: 1165 FESVMHMKYLNSVIDPGDAVGIVAGQSIGSQTTQMTLNTFHLAGHSARNVTLGVPRLRE- 1223 Query: 956 GSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGD----GEQV 1011 I ++ K + + + + +E L + G+ V Sbjct: 1224 --IVMTASKKPMTPTMTVEVIEELSEKAGQSFAKGISRLSIAEVIDTLQVRESTTSGKGV 1281 Query: 1012 AGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGG 1071 + + D + + + + DE + ++ Sbjct: 1282 KAK--IYDID----MKFFDAKEYFEEYAITKRDLVRALQDEFIPKFIKKIRAELKKREDE 1335 Query: 1072 KDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKA 1105 KDL+ G + A Sbjct: 1336 KDLKGVSAAQPEIGVSIGTTEYFDGAVRETQAGG 1369 Score = 99.2 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 36/211 (17%), Positives = 73/211 (34%), Gaps = 40/211 (18%) Query: 1155 ILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIP-KWRQLNVFEGERVERGDVISDG 1213 L E + + + + + TP D I + L G + + + + Sbjct: 1511 PLVEDAARRAVIQAVQDLGSCLYTPPDKEKNEPAKIDIEGVNLKAMRGYQ-DYINPHTIR 1569 Query: 1214 PEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD 1273 + HD+L GV A I+ E+ DV+ + ++++H+ +I Sbjct: 1570 TNSIHDMLIFYGVEAARSTIIREMSDVFSGHSITVDNRHLNLIGDV-------------- 1615 Query: 1274 FLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLT 1333 + +G + L+ + S S +SF+ + + Sbjct: 1616 ------------------MTHSGGFKSYSRNGLI------KESNSPFSKSSFETSVGFMR 1651 Query: 1334 EAAVAGKRDELRGLKENVIVGRLIPAGTGYA 1364 +A + D+L+ ++VGRL GTG Sbjct: 1652 DAVLERDFDDLKSPSSRIVVGRLGNVGTGAF 1682 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 30/225 (13%), Positives = 61/225 (27%), Gaps = 42/225 (18%) Query: 15 EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74 E A+ ++ S + I+ S + +++ P + L+ + Sbjct: 10 SELAAVDFSVYSSEDIKKISVKRIFNTPSLDS-LHNPIPNSLYDPALGA----------- 57 Query: 75 YKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRD 134 +C C GHIEL P ++ F + LL Sbjct: 58 -----WGDHVCTTCRASSWSCP---GHPGHIELPVPIWNVTFFDQ----MYRLLRAKCDF 105 Query: 135 IERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGD------------------EF 176 R+ + L + ++ + +D + E+G E Sbjct: 106 CHRLRIARVEINAYACKLRLLQYGLVDQTAEIDKIGEYGQDAAVDADENGNVDPQTKMEL 165 Query: 177 DAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRI 221 K + I+ K D + + K+ K + Sbjct: 166 RNKFVRKCIREAQKQGDSGAFFGGAKNPVAAEQRRELIKEFFKEL 210 >UniRef50_B3PM77 DNA-directed RNA polymerase subunit beta' n=2 Tax=Mycoplasma RepID=RPOC_MYCA5 Length = 1464 Score = 520 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 291/682 (42%), Positives = 399/682 (58%), Gaps = 85/682 (12%) Query: 5 LKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGP 64 A +++ I +ALA+PD + SWS GEV KPETINY+++KPER GLF IFGP Sbjct: 3 KSRKYATLDSDKIAKISLALATPDDVESWSHGEVTKPETINYKSYKPERGGLFDEIIFGP 62 Query: 65 VKDYECL-CGKYKRLKHRGVICEK---CG---VEVTQTKVRRERMGHIELASPTAHIWFL 117 + DY C CG + + G C K C VE+ RR MGHI+L SP H WF Sbjct: 63 MIDYRCPICGHKYKKINEGSFCSKTELCKQEKVEILPKISRRNHMGHIKLNSPVVHFWFF 122 Query: 118 KSLPSRIGLLLDMPLR-----------DIERVLYFESYVVIEGGMTNLERQQILTEEQ-- 164 K S I LLD+ + D+E ++Y++S++V+E G + ++ + Sbjct: 123 KVDHSIIFKLLDLTVAGRPNTEPVRRIDLENLIYYKSHIVLESGGIKALPKNLIIDINVA 182 Query: 165 ---YLDALEEFGDEF--------------------------------------------- 176 Y DALEE F Sbjct: 183 AVIYKDALEELITRFEPGTEDYEDIRETLDNLIEKASSKIGQDYGIDFYELNEVIEHYSE 242 Query: 177 -DAKMGAEAIQALLKSMDLEQECEQLREELNETNSETK-------------RKKLTKRIK 222 GA+AI+ LLK++DL++E E + ++ + N E R+KL KR++ Sbjct: 243 AKIGTGAQAIEYLLKNLDLQKEKELVSAKIKKINDEEIMSGAKIASTSRQTREKLYKRLQ 302 Query: 223 LLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL 282 ++ AF++S +P M++ LPV+P DLRPL+ LDGGR +TSD+N+LYRRVI RNNRLK+ Sbjct: 303 VINAFIESKQEPTSMLIYNLPVIPADLRPLIQLDGGRHSTSDINELYRRVIIRNNRLKQW 362 Query: 283 LDLAAPDIIVRNEKRMLQEAVDALLDNGRRG-RAITGSNKRPLKSLADMIKGKQGRFRQN 341 + AP ++++NE RM+QEAVDAL+DN RR + + RP KS++D + GK+GRFRQN Sbjct: 363 QEKDAPTLVIQNELRMIQEAVDALIDNARRSPNPVLSKDNRPFKSISDALTGKKGRFRQN 422 Query: 342 LLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMV 401 LLGKRVDYSGRSVI VGP L++HQCG+P++MA +LF+P+I +L + +ATTIK AKKM+ Sbjct: 423 LLGKRVDYSGRSVIVVGPNLKMHQCGIPREMAAKLFEPWIIHRLIEKEVATTIKNAKKML 482 Query: 402 EREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADF 461 E + V+W + EVI+ VLLNRAPTLHRL IQAFEPVL+ GKAI+LHPLVC +NADF Sbjct: 483 EDQNPVIWPHIAEVIKGRLVLLNRAPTLHRLSIQAFEPVLVRGKAIRLHPLVCTPFNADF 542 Query: 462 DGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAK 521 DGDQMAVHVP++ A LE+R LM++ NIL +GEPII PSQD++LG+YY+T + A Sbjct: 543 DGDQMAVHVPISERALLESRELMLANKNILGTKDGEPIINPSQDMILGIYYLTIEEPGAL 602 Query: 522 GEGMVLTGPKEAERLYRSGLASLHARV--KVRITEYEKDANGELVAKTSLKDTTVGRAIL 579 GEG + + R Y + SLHARV + + K +TVG+ I Sbjct: 603 GEGRIFDNYEHMIRAYEAKKVSLHARVALPIEEVKNSKIKAFASRESQRYIISTVGKFIF 662 Query: 580 WMIVPKGLPYSIVNQALGKKAI 601 I PK P+ N+ ++ Sbjct: 663 NNIFPKSFPFIFDNKVTEATSL 684 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 147/500 (29%), Positives = 240/500 (48%), Gaps = 44/500 (8%) Query: 600 AISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEA 659 +++L+ + D I GF Y++ SG + I D++ +KK E I+E +A Sbjct: 809 EKAEILDDVWFRY-TNMVASILDDIKDLGFKYSSLSGITFAISDILETDKKPEYIAEGDA 867 Query: 660 EVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSF 719 +A++++ + GL++ +RY+ I W +V + ++ Sbjct: 868 YIAQLKQYYNDGLISDDDRYSLTIKKWTDIKAKVQGELQQIIKEN-------------PR 914 Query: 720 NSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSI-------------IETPITANFREG 766 N I M +SGARG+ + QLAGMRGLMA S +E P+ ++F EG Sbjct: 915 NPIITMINSGARGNISNYVQLAGMRGLMANNTKSTRADVKNERVVRSTVEIPVKSSFIEG 974 Query: 767 LNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVI 826 L +++ STHG RKG DTAL TA SGYLTRRLVDVAQ++VV +++CG+ G ++ ++ Sbjct: 975 LTAFEFYSSTHGTRKGATDTALNTAKSGYLTRRLVDVAQNIVVRKENCGSDYGHIVRDIV 1034 Query: 827 E--GGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRS 884 + G + PL++R++GR + ++ T L RNTL+ ++ + + V V++RS Sbjct: 1035 DTKNGQIIVPLKERIIGRYANKPIIGEKTKQELAKRNTLITDKLAQKIIDEGVKEVEIRS 1094 Query: 885 VVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAAS-R 943 V+ C+T GVC C+G+DLA ++N GEA+G+IAAQSIGEPGTQLTMR FH GG A Sbjct: 1095 VLGCNTKNGVCKMCFGKDLATNRVVNIGEAVGIIAAQSIGEPGTQLTMRVFHTGGVAGAE 1154 Query: 944 AAAESSIQVKNK---GSIKLSNVKSVVNSSGKLVI-----TSRNTELKLIDEFGRTKESY 995 ++ + G++V + N+ L I KE+ Sbjct: 1155 DITGGFPRLIELIDAHEQPWGRPAVISPYEGEIVEDLVEDKNVNSHLLTIKVVNSKKETV 1214 Query: 996 K----VPYGAVLAKGDGEQVAGGETVAN--WDPHTMPVITEVSGFVRFTDMIDGQTITRQ 1049 V L G+ V G+ ++ + +T+ + + Q Sbjct: 1215 NKKVHVYTTKKLRVKVGDHVKVGQKLSEGPVIVKELLELTDTITVQNYLLKEIQKIYRIQ 1274 Query: 1050 TDELTGLSSLVVLDSAERTA 1069 ++ +++ Sbjct: 1275 GIAISDKYIEIIIRQMMSKI 1294 Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 106/417 (25%), Positives = 181/417 (43%), Gaps = 21/417 (5%) Query: 1005 KGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDS 1064 D G+ + P+ + G +I +T T ++ + Sbjct: 1030 VRDIVDTKNGQIIV-------PLKERIIGRYANKPIIGEKTKQELAKRNTLITDKLAQKI 1082 Query: 1065 AERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDTLAR 1123 + ++R L G + G D+ + V + I G L Sbjct: 1083 IDEGVKEVEIRSVLGCNTKNGVCKMCFGKDLATNRVVNIGEAVGIIAAQSIGEPGTQLTM 1142 Query: 1124 IPQESGGT---KDITGGLPRVADLFEARRPK--EPAILAEISG-IVSFGKETKGKRRL-- 1175 +GG +DITGG PR+ +L +A PA+++ G IV E K Sbjct: 1143 RVFHTGGVAGAEDITGGFPRLIELIDAHEQPWGRPAVISPYEGEIVEDLVEDKNVNSHLL 1202 Query: 1176 ---VITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRY 1232 V+ + + + ++L V G+ V+ G +S+GP ++L L V Y Sbjct: 1203 TIKVVNSKKETVNKKVHVYTTKKLRVKVGDHVKVGQKLSEGPVIVKELLELTDTITVQNY 1262 Query: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANREL 1292 ++ E+Q +YR+QG+ I+DK+IE+I+RQM+ K I + G S F G V+ + N L Sbjct: 1263 LLKEIQKIYRIQGIAISDKYIEIIIRQMMSKIVIHDPGDSKFFAGAIVDIFDYQEENATL 1322 Query: 1293 EANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVI 1352 + K A + G + L ++SF++AAS+QET+++L AA++ + D L GLKEN+I Sbjct: 1323 LSQRKRPAFGKVVIKGAKQVPLLSDSFLAAASYQETSKILVHAAISSRSDSLSGLKENII 1382 Query: 1353 VGRLIPAGTGY--AYHQDRMRRRAAGEAPAAPQVTAEDASASLAELLNAGLGGSDNE 1407 VG+ IPAGT + R + + P++ D+ +L + D + Sbjct: 1383 VGKKIPAGTALYPFESHSKYDIRPSIDYFRKPELETSDSEFIPVDLESYHQELEDEQ 1439 >UniRef50_Q1ACN5 DNA-directed RNA polymerase subunit beta' n=2 Tax=Streptophytina RepID=RPOC1_CHAVU Length = 666 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 264/590 (44%), Positives = 374/590 (63%), Gaps = 56/590 (9%) Query: 20 IKIALASPDMIRSWS---------FGEVKKPETINYRTFKPERDGLFCARIFGPVKDYEC 70 ++I LASP IR W+ GEVK+P T++YR KPE+DGLFC +IFGP+K C Sbjct: 10 LQIGLASPKQIRKWAERILPNGDVVGEVKEPHTLHYRNQKPEKDGLFCEKIFGPIKSGRC 69 Query: 71 LCGKYKRLKHRGV---ICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLL 127 CGKY+R+ +G C+KC VE T ++VRR RMG+I L P AH+W+LKS PS I L Sbjct: 70 ACGKYERIPEQGEGKKFCKKCWVEFTYSRVRRYRMGYISLGCPVAHVWYLKSTPSHIANL 129 Query: 128 LDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALE--------------EFG 173 L L+DIE + Y+ ++ + I QY E Sbjct: 130 LGQKLKDIESLAYY-NHCLGNPSTNYPTLLFIKKYFQYSSLAWLLHILLCFFSFKGFEAL 188 Query: 174 DEFDAKMGAEAIQALLKSMDLEQECEQLR------------EELNETNSETKRKKLTKRI 221 ++ + G +AI+ LL +DL+ ++ R +E ++ ++++L +RI Sbjct: 189 EDREIATGGDAIKRLLSELDLQNTIDESRKACEELAYFDPLDEKEAQKAQREKERLVRRI 248 Query: 222 KLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKR 281 K+ F ++ KP+WM+L+ +PVLPPDLRP++ L+ G ATSDLNDLYR+V+ RN L Sbjct: 249 KIASYFQETKIKPQWMVLSTIPVLPPDLRPMIHLNDGPLATSDLNDLYRKVLYRNKTLWE 308 Query: 282 LLDL--AAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFR 339 L AP ++ ++KR++QEAVDAL+DNG G + SN RP KSL+D+I GKQGRFR Sbjct: 309 LRQGIWPAPHSLMISQKRLVQEAVDALIDNGLGGPPMRDSNNRPYKSLSDVISGKQGRFR 368 Query: 340 QNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKK 399 QNLLGKRVDYSGRSVI VGP+L+++QCGLPK MA+ELF+PF+ + + LA+ ++ AK Sbjct: 369 QNLLGKRVDYSGRSVIVVGPHLKIYQCGLPKNMAIELFQPFLIHYMINKKLASNLRVAKS 428 Query: 400 MVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNA 459 +++ + +VW IL EVI++HPVLLNRAPTLHRLGIQAF+P+L+EGKAI LHPLVCA +NA Sbjct: 429 IIQSKHPIVWFILKEVIKKHPVLLNRAPTLHRLGIQAFQPILVEGKAILLHPLVCAGFNA 488 Query: 460 DFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCV- 518 DFDGDQMAVHVPL+ E+Q EAR +M+S N+LSPA G+PI +PSQD++LGLY +T + + Sbjct: 489 DFDGDQMAVHVPLSPESQKEARLIMISNRNLLSPATGDPITLPSQDMLLGLYMLTLEDLQ 548 Query: 519 ----NAKGEGM----------VLTGPKEAERLYRSGLASLHARVKVRITE 554 ++ + + ++ + L+ + +++ Sbjct: 549 RNFSFSQKQCLKKHTNFNQMPSFISFEDVIKARVERKIHLYTSLWLKLKN 598 >UniRef50_C4Q0S7 DNA-directed RNA polymerase n=1 Tax=Schistosoma mansoni RepID=C4Q0S7_SCHMA Length = 1784 Score = 515 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 206/1282 (16%), Positives = 382/1282 (29%), Gaps = 254/1282 (19%) Query: 85 CEKCGVEVTQTKVRRERMG--HIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFE 142 C+ CG G HI H + + + D +L Sbjct: 164 CKLCGS---------GSWGLRHISKQQLVFHPISIVGSNRSKARMKEELEEDCSDLLEGC 214 Query: 143 SYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLR 202 + +E+ L + + + + A L +++ +Q +++ Sbjct: 215 -----KVDDQRMEQNLSLFIDMSDGSEASKAEAVYTANLSTARNMLSEAIKSQQHSKEIC 269 Query: 203 EELNETNSETKRKKLTKRIKLLEAF-------VQSGNKPEWMILTVLPVLPPDLRPLVPL 255 + L+ F + + + + + P R + Sbjct: 270 FPPEMIRVMLRCLWAHDGDLLVLLFPMLQAARLNHTFPTDVFFMDNVLLSPSLCRWPRHV 329 Query: 256 DGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKR------------------ 297 G +Y R++ R L +++ V N Sbjct: 330 -GNLVYEHPETAVYVRIVKRAQCLHNIVEFIRQHNEVSNSVDVNKPVEPKSTTSNGDLID 388 Query: 298 -------------MLQEAVDALLDNGRR-------GRAITGSNKRPLKSLADMIKGKQGR 337 +LQ AV+ + D R SN L L ++ K+G Sbjct: 389 DAQSDGALKLATVLLQAAVNGIYDMNMAITPLGLESRNGISSNSVRLPGLRQRLERKEGL 448 Query: 338 FRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAA 397 FR +++GKRV+++ RSVI+ P L + + G+P A L P K L L + Sbjct: 449 FRMHMMGKRVNFACRSVISPDPNLSVTEVGVPLFFAFRLTFPTPVTKFNLVHLRQLVMNG 508 Query: 398 ---------------------------------------KKMVEREEAVVWDILDEVIRE 418 K ++ ++ + + ++ Sbjct: 509 PNNYPGATSIQFSNGVITMLPQNDTPQAKKKREMLALRLKPLISGKDNIPIVVNRHLLDG 568 Query: 419 HPVLLNRAPTLHRLGIQAFEPVLIE---GKAIQLHPLVCAAYNADFDGDQMAVHVPLTLE 475 +++NR PTLHR +QA +I+ K ++LH C AYNADFDGD+M H + Sbjct: 569 DMLIMNRQPTLHRPSMQAHRVRIIKCVGAKTLRLHYSNCKAYNADFDGDEMNGHFVQSYA 628 Query: 476 AQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVL----TGP 530 A+ E L + L P +G P+ QD V+ +T RD + + L P Sbjct: 629 AKAELETLASVPHQYLVPKDGTPLAGLIQDHVIAAVKLTMRDRFFEHADYLDLVYHALRP 688 Query: 531 KEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTV--------------GR 576 A S +K I + G+ V T L + T + Sbjct: 689 LFAINSQTSSGPPSIITIKPAICWPKCLWTGKQVISTLLINLTPTGLLPLNATLIGRRTK 748 Query: 577 AILW----------------MIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIF 620 A LW +I L +++++ + + +++ Y G + Sbjct: 749 AELWSGVAPGGPTPLSDVDLVICDGYLASGMLDKSHIGSSSTGLIHCVYEAYGPESASCL 808 Query: 621 ADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISE------------------------ 656 + I + ++G+ D+++ + E Sbjct: 809 LNGISLLANRFLKFIAFTMGLKDILLSHRADEERQRRFSNLKDLGLCAFADTFSLKPDEL 868 Query: 657 AEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQ 716 E+ V + Q Q T ++ + A DR+ +A G Sbjct: 869 TESNVKRLYRQAQFPSSTDQSSLKRLAQLDMAIKDRLKRAQ----DAVCDSAIPGGLYVG 924 Query: 717 VSFNSIYMMADSGARGSAAQIRQLAGMRGLM--------------AKPDGSIIE------ 756 N++ +M GA+G +Q++ G + P + Sbjct: 925 FPENNLQLMVHVGAKGGMVNAQQMSVALGQIELEGRRVPLMLSGKTLPSFPPYDVRPRAG 984 Query: 757 TPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGT 816 TA F L + F + R GL DTA+KT+ SGYL R + +DL ++ D Sbjct: 985 GMCTARFLTSLPAQELFFHSMAGRDGLVDTAVKTSRSGYLQRSAIKHLEDLSISYDGTVR 1044 Query: 817 HEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQW-------- 868 G + G D + + L + + + ++ Sbjct: 1045 DSGSNIIQFRYGDDGVDVCQAGFLQPIGLHFFADNINLMKIRWHSDKINTDNPAYAHLFE 1104 Query: 869 --------------------------------------------CDLLEENSVDAVKVRS 884 + E Sbjct: 1105 KNILPKPIQMMADQVGVKRQGILHKTVSRHKLAKLFNIGKMAHKALKIMETEQQVSGKDK 1164 Query: 885 VVSCDTDFGVC-AHCYGRDLARGHIIN----KGEAIGVIAAQSIGEPGTQLTMRTFHIGG 939 +++ C A RDL IIN G+ +G++AAQS+GEP TQ+T+ TFH G Sbjct: 1165 IMNEIIPEPPCAAAAELRDLCLAKIINAQAPPGDPVGLLAAQSVGEPSTQMTLNTFHFAG 1224 Query: 940 AASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPY 999 +++ SN+ + + ++ + K+ YK+ Sbjct: 1225 RGEMNVTLGIPRLREILMSGSSNISTPCMEV--PIWPTKEAQQL---SEQIAKKFYKLKL 1279 Query: 1000 GAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSL 1059 L G++V ++ + P + +L + Sbjct: 1280 SETLQLPIGQKVNYVSDSCTFEFNLQPKSVYSDQSHVTPVRVLRFLERILFPDLAHRLNE 1339 Query: 1060 VVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGD 1119 + D + + A+ G + + I + + + D Sbjct: 1340 ELKDQGKTSLIKSFALSAMARQQQAGQNKN-SEEPAEDADIVNQPGIGRTRAQDEWNEDD 1398 Query: 1120 ----TLARIPQESGGTKDITGG 1137 R + + +DIT G Sbjct: 1399 GHEAIRRRRLEANAEEEDITCG 1420 Score = 87.6 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 22/155 (14%), Positives = 43/155 (27%), Gaps = 21/155 (13%) Query: 12 TKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECL 71 + ++ S D +R S +V + T + GL Sbjct: 4 ANVGQIVGLRYGFYSSDEVRRLSVRKVTNDLAFDKFTGRGVDGGLHD------------- 50 Query: 72 CGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMP 131 + C CG++ T GHIE + P + + L + Sbjct: 51 --VNFGVIGYSETCAHCGMDFTDCP---GHCGHIEFSKPVFNPFMFDVLYKIVKSFC-FG 104 Query: 132 LRDIERVLYFES--YVVIEGGMTNLERQQILTEEQ 164 + Y S Y++ + + L ++ Sbjct: 105 CFRLYSAEYLASALYLLGAPVGKLPGKLKTLEIKE 139 Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 28/220 (12%), Positives = 63/220 (28%), Gaps = 44/220 (20%) Query: 1152 EPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVIS 1211 ++++ + GI + + + + +E L + D+ Sbjct: 1606 NRSVVSSVPGIEKTIIDRSKPNQWMFRVEGINMIFET----SSNLFYNTXXXXQVFDLSQ 1661 Query: 1212 DGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGS 1271 + G+ A + EV V+ G+ +N +H+ Sbjct: 1662 LYTNNITVMNETYGIEAARAALQREVSGVFGHYGIHVNSRHL------------------ 1703 Query: 1272 SDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRV 1331 + + L G A ++ + S I +F+ V Sbjct: 1704 --------------SLISDYLTKFGVYHAFNR-------RSMSSHPSPIQQMTFETVANV 1742 Query: 1332 LTEAAVAGKRDELRGLKENVIVGRLIP-AGTGYAYHQDRM 1370 L + D L +++ GR++ AGT ++ Sbjct: 1743 LKHSLQNDSMDNLVSPSASLVAGRIVHYAGTNCFELLQKL 1782 >UniRef50_P56763 DNA-directed RNA polymerase subunit beta' n=180 Tax=Embryophyta RepID=RPOC1_ARATH Length = 680 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 252/630 (40%), Positives = 365/630 (57%), Gaps = 66/630 (10%) Query: 16 EFDAIKIALASPDMIRSWS---------FGEVKKPETINYRTFKPERDGLFCARIFGPVK 66 + ++I L SP I +W+ GEV KP T +Y+T KPE+DGLFC RIFGP+K Sbjct: 6 KHQQLRIGLVSPQQISAWATKIIPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIK 65 Query: 67 DYECLCGKYKRLKHRGV---ICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSR 123 C CG Y+ + CE+CGVE +++RR +MG+I+L P H+W+LK LPS Sbjct: 66 SGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLKRLPSY 125 Query: 124 IGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFG---------- 173 I LLD PL+++E ++Y + ++ +Y ++ Sbjct: 126 IANLLDKPLKELEGLVY-CDFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGF 184 Query: 174 ---DEFDAKMGAEAIQALLKSMDLE-------QECEQLREELNETNSETKRK------KL 217 + GA AI+ L +DL E +QL EE N RK L Sbjct: 185 DIFRNREISTGAGAIREQLADLDLRIIIENSLVEWKQLGEEGPTGNEWEDRKIVRRKDFL 244 Query: 218 TKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNN 277 +R++L + F+++ +PEWM+L +LPVLPP+LRP++ ++GG+ +SD+N+LYRRVI RNN Sbjct: 245 VRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIEGGKLMSSDINELYRRVIYRNN 304 Query: 278 RLKRLL--DLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQ 335 L LL + P +V +++++QEAVD LLDNG RG+ + + + KS +D+I+GK+ Sbjct: 305 TLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKE 364 Query: 336 GRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIK 395 GRFR+ LLGKRVDYSGRSVI VGP L LH+CGLP+++A+ELF+ F+ L + LA+ I Sbjct: 365 GRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIG 424 Query: 396 AAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCA 455 AK + ++ +VW+IL EV++ HPVLLNRAPTLHRLGIQ+F+P+L+EG+ I LHPLVC Sbjct: 425 VAKSQIREKKPIVWEILQEVMQGHPVLLNRAPTLHRLGIQSFQPILVEGRTICLHPLVCK 484 Query: 456 AYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTR 515 +NADFDGDQMAVHVPL+LEAQ EAR LM S N+LSPA G+PI VP+QD+++GLY +T Sbjct: 485 GFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTS 544 Query: 516 -------------------------DCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKV 550 + + +A YR +L + + + Sbjct: 545 GTRRGICANRYNPCNRKNYQNERIYETNYKYTKEPFFCNSYDAIGAYRQKKINLDSPLWL 604 Query: 551 RITEYEKDANGELVAKTSLKDTTVGRAILW 580 R ++ V ++ ++ Sbjct: 605 RWQLDQRVIASREVPIEVHYESFGNYHEIY 634 >UniRef50_C3ZBW5 DNA-directed RNA polymerase n=1 Tax=Branchiostoma floridae RepID=C3ZBW5_BRAFL Length = 1731 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 161/854 (18%), Positives = 289/854 (33%), Gaps = 157/854 (18%) Query: 140 YFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECE 199 YF+ + R + + K + + L ++ + Sbjct: 200 YFKKRGSKCVHCKSPVRNLKMQHNSRILFKGIPKRHHKRKNDDDWLADKLDVKNVITDPT 259 Query: 200 QLREELNETNSETKRKKLTKRIKLLEAFV--------QSGNKPEWMILTVLPVLPPDLRP 251 L + + L K+ L + + Q + L VLPV P RP Sbjct: 260 VESGYLTPYEARAHLRALWKKEGELLSNLFGALRLVPQGTCPIDIFFLEVLPVPPSRFRP 319 Query: 252 LVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDI--------------------- 290 + L RF + +V+ +++LL + Sbjct: 320 VSVLGDKRF-ENAQTSNLAKVLAECVVVRKLLQEMGKEEAESTKTGKVNTILLIVFGFYT 378 Query: 291 --------------IVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQG 336 V N LQ +V+ ++D+ ++K P +I+ K G Sbjct: 379 QTILDEISGTTVTEKVNNTWLRLQASVNRVVDSDLDKL---SNDKSPGIKQVLLIEKKDG 435 Query: 337 RFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKA 396 FR++++GKRVDY+ RSVI+ PY+ + + G+P A +L P +R L + Sbjct: 436 LFRKHMMGKRVDYAARSVISPDPYINMDEIGIPLVFATKLTYPQPVTTWNVRELRQAVIN 495 Query: 397 AKKMVEREEAVVWD-------------------------------------ILDEVIREH 419 + VV + + + Sbjct: 496 GPNVHPGAAFVVNENGHKTVLSVSDPTQREAIAKQLLTPSSYPGAAMGTKIVHRHIKNGD 555 Query: 420 PVLLNRAPTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQL 478 +LLNR PTLH+ I A + ++ G K ++LH C YNADFDGD+M H P + Sbjct: 556 VLLLNRQPTLHKPSIMAHKARILPGEKTLRLHYANCKTYNADFDGDEMNAHFPQNELGRA 615 Query: 479 EARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVLTGPKEAERLY 537 EA A+ + L P +G+P+ QD ++ MT R A+ E L ++ Sbjct: 616 EAYAIASTDQQYLGPKDGKPLSGLIQDHMVSGVTMTLRGRFFAREEYHQLVFSALTDKQG 675 Query: 538 RSGLASLHARVKVRITEYEKDA------------------NGELVAKTSLKDTTVGRAIL 579 L + VK RI K + + L T RA Sbjct: 676 HVRLLP-PSIVKPRILWSGKQVVSTVLLNIIPEGKAPLNMDSKAKISGKLWTTAPSRASR 734 Query: 580 WMIVP---------------KGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQI 624 + P L I+++ +++ C + G K + + Sbjct: 735 SGVRPLRDGEMCESQVIIRQGQLLCGILDKGHYGPTPYGLVHCCSELYGGKVSSRLLTCL 794 Query: 625 MYTGFAYAARS-GASVGIDDMVIPEK----KHEIISEAEAEVAEIQEQFQSGLVTAGERY 679 + G ++G++D+++ +K + EI++ A + + ++ Sbjct: 795 GRLFTTFLQNHLGFTLGVEDILLTQKADVKRREIMTAAAHCGDDAAARALGMDISVKIET 854 Query: 680 NKVIDIWAAAN-----------DRVSKAMMDNLQTE-TVINRDGQEEKQVSFNSIYMMAD 727 + + + A+ D K+ D + K N++ +M Sbjct: 855 DTLKEALQTAHFSPDDQDMKEWDMAMKSKTDQFSNDINKACTPNGLLKMFPHNNLQLMVQ 914 Query: 728 SGARGSAAQIRQLAGMRGLM--------------AKPDGSIIE------TPITANFREGL 767 SGA+GS+ Q++ + G + + P + + F G+ Sbjct: 915 SGAKGSSVNCMQISSLLGQIELEGRRPPLMPSGSSLPSFLPYDTSPRAGGFVDGRFLTGI 974 Query: 768 NVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIE 827 +YF R+GL DTA+KT+ SGYL R ++ + LV+ D + Sbjct: 975 RPQEYFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVINYDLTVRDSDGSLIQFYY 1034 Query: 828 GGDVKEPLRDRVLG 841 G D + + + LG Sbjct: 1035 GEDGLDIPKTQFLG 1048 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 37/239 (15%), Positives = 74/239 (30%), Gaps = 50/239 (20%) Query: 1133 DITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPK 1192 DI G + L E K A++ + GI Sbjct: 1543 DIVGSKFDMTSLVEREAHK--AVVHQTPGITRCFLSDSKL-------PGEEGVTRLKTEG 1593 Query: 1193 WRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKH 1252 + +F+ +RV + + H + G+ A R IV E+++V+ + G++ Sbjct: 1594 VKLQELFKYDRVFDLNKLC--SNHIHAMANTYGIEAACRIIVKEIKEVFAVYGIE----- 1646 Query: 1253 IEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKA 1312 V+ + + + G + Sbjct: 1647 ---------------------------VDPRHLSLVADYMTYEGVYKPFNRTGIQ----- 1674 Query: 1313 SLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMR 1371 + S SF+ + + L EA ++G +D+L+ ++ GR + GTG + Sbjct: 1675 --SNASPFQQMSFETSMQFLKEATISGAKDDLKSPSARLVTGRPVMGGTGCFELLQPLV 1731 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 70/214 (32%), Gaps = 27/214 (12%) Query: 11 QTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYEC 70 + ++ ++ + S + I S EV P+T + P GL+ + +D Sbjct: 5 EIPSQRLCGVQFSTYSAEEICRLSVKEVTNPQTFDN-LLHPTTGGLYDPALGPTDRD--- 60 Query: 71 LCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDM 130 +C C MGH+ L P + FL+ + +L Sbjct: 61 ------------DLCGTCAQNYLHCP---GHMGHVNLPLPVFNPLFLR----LLYQMLRG 101 Query: 131 PLRDIERVLYFESY----VVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQ 186 R++ + + + Q + + L + E + D ++ ++ Sbjct: 102 SCFYCHRLMCPKIQAQLITSQLKALDHGMVQMVEKLHEVLSGILEEEGDADDDYISQQLE 161 Query: 187 ALLKSMDLEQECEQLREELNETNSETKRKKLTKR 220 L+ + + + + N + KRK L K Sbjct: 162 EELQKAISGVDTKVTQTQQNIKTAVGKRKDLVKE 195 Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 35/67 (52%) Query: 903 LARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSN 962 ++ GEA+G++AAQSIGEP TQ+T+ TFH G +++ + +N Sbjct: 1223 KYMRSLVEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASAN 1282 Query: 963 VKSVVNS 969 +K+ Sbjct: 1283 IKTPTME 1289 >UniRef50_Q0P3M5 DNA-directed RNA polymerase subunit beta' n=1 Tax=Ostreococcus tauri RepID=RPOC1_OSTTA Length = 740 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 283/736 (38%), Positives = 387/736 (52%), Gaps = 123/736 (16%) Query: 16 EFDAIKIALASPDMIRSWS---------FGEVKKPETINYRTFKPERDGLFCARIFGPVK 66 + +++ LASP I+ WS GE+ K +TINYRTFKPER GLFC RIFG Sbjct: 2 SIEYVQLQLASPSEIKRWSQRILPTGEVVGEISKADTINYRTFKPERGGLFCERIFGSTS 61 Query: 67 DYECLCGKYKRLKHRG-----------------------VICEKCGVEVTQTKVRRERMG 103 + EC CGK KR K +C CGVE T +KVRR RMG Sbjct: 62 NGECSCGKTKRRKLIVPVNFNRLTLQKRNAELEATQAIIEVCPSCGVEPTNSKVRRYRMG 121 Query: 104 HIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEE 163 I L P AH+W+ ++ P+ + LL+M ++I+ ++F++Y + G N + + Sbjct: 122 CISLKKPVAHMWYFRNSPNVLAALLNMRSQEIDETIHFQTYTPSKYGTQNYCLHGGV--Q 179 Query: 164 QYLDALEEFGDEF---------------------------DAKMGAEAIQALLKSMDLEQ 196 Y++ E F G EA+Q LL +DL Sbjct: 180 WYVNHWEPMHPYFAGDIDVSMDKAASWNSKSTFMPSQIKTIENCGGEALQELLTRLDLVF 239 Query: 197 ECEQLREELNETNSETK--------------------------------RKKLTKRIKLL 224 L +L T + K ++ ++R++ + Sbjct: 240 LQRMLSRKLKNTIEKKKLAAKSLRKRHKRRKTAKLLGRTDQKNYGITIKVREYSRRLEFI 299 Query: 225 EAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLL- 283 + + G +PEWMIL++ PVLPPDLRP++ + GRFATSDLNDLYRR+I R R ++ L Sbjct: 300 RSLARKGLRPEWMILSIFPVLPPDLRPMIQMSSGRFATSDLNDLYRRLIYRKIRFEKFLT 359 Query: 284 ---DLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQ 340 + PD+++R++ +LQEA D+++DNGR + N++P KSL +I+GK GRFRQ Sbjct: 360 LFDEEFLPDLLIRHDLCLLQEAADSIIDNGRLDKPAQRPNRKPFKSLTSIIEGKHGRFRQ 419 Query: 341 NLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKM 400 NLLGKRVDYSGRSVI VGP LRLHQCGLP++MALELF+PF+ L I+AAK + Sbjct: 420 NLLGKRVDYSGRSVIVVGPKLRLHQCGLPREMALELFQPFVIRALLEESGVKNIRAAKNL 479 Query: 401 VEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNAD 460 ++R +VWDILD V+ HPVLLNRAPTLHRLGIQAFEP+L+ G+AIQLHPLVC A+NAD Sbjct: 480 LQRRSQMVWDILDTVVLGHPVLLNRAPTLHRLGIQAFEPILLSGRAIQLHPLVCPAFNAD 539 Query: 461 FDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT--RDCV 518 FDGDQMAVHVPL LEAQ EAR LM++T+N LSPA GEP I+PSQD++LG YY+T + V Sbjct: 540 FDGDQMAVHVPLGLEAQAEARLLMLATHNWLSPATGEPSILPSQDMILGFYYLTTLKPTV 599 Query: 519 NAKG---------------EGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGEL 563 + K + + Y + LH + +R + Y + N E Sbjct: 600 SLKRPVEQPMAVRGRNLIQSNSIFNNFESVLHAYETSKVDLHEIIWLRWSSYIQTTNSEP 659 Query: 564 VAKTSLKDTTVGRAILWMIVPKGLPYSIVN-------QALGKKAISKMLNTCYRILGLKP 616 + T K V ++ G N ++ +ISK+ N + Sbjct: 660 LQITVNKTGHVTTVYDSFVMQSGATNGPDNSMLSVQMKSRDTSSISKVYNCLTSL--NAA 717 Query: 617 TVIFADQIMYTGFAYA 632 F Sbjct: 718 AFYILTTPGRVLFNNL 733 >UniRef50_A4GYP9 DNA-directed RNA polymerase subunit beta' n=15 Tax=Magnoliophyta RepID=RPOC1_POPTR Length = 689 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 248/554 (44%), Positives = 348/554 (62%), Gaps = 41/554 (7%) Query: 4 LLKFLKAQTKTEEFDAIKIALASPDMIRSWS---------FGEVKKPETINYRTFKPERD 54 + + + + ++I SP I +W+ GEV KP T +Y+T KPE+D Sbjct: 1 MNQNFSSMIDRYKHQQLRIGSVSPQQISAWTNKILPNGEIVGEVTKPYTFHYKTNKPEKD 60 Query: 55 GLFCARIFGPVKDYECLCGKYKRLKHRGV---ICEKCGVEVTQTKVRRERMGHIELASPT 111 GLFC RIFGP+K C CG Y+ + CE+CGVE +++RR +MG+I+LA P Sbjct: 61 GLFCERIFGPIKSGICACGNYRVIGDEKEEPKFCEQCGVEFVDSRIRRYQMGYIKLACPV 120 Query: 112 AHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEE 171 H+W+LK LPS I LLD PL+ +E ++Y + ++ +Y + Sbjct: 121 THVWYLKRLPSYIANLLDKPLKQLEGLVY-CDFSFARPIAKKPTFLRLRGSFEYEIQSWK 179 Query: 172 FG-------------DEFDAKMGAEAIQALLKSMDLEQ-------ECEQLREELNETNSE 211 + + GA AI+ LL +DL E ++L EE N Sbjct: 180 YSIPLFFTTQGFDTFRNREISTGAGAIRELLADLDLRIILDYSSLEWKELGEEGPTGNEW 239 Query: 212 TKRK------KLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDL 265 RK L +R++L + F+++ +PEWM+L +LPVLPP+LRP++ +DGG+ +SD+ Sbjct: 240 EDRKVGRRKDFLVRRVELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDI 299 Query: 266 NDLYRRVINRNNRLKRLL--DLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRP 323 N+LYRRVI RNN L LL + P +V +++++QEAVD LLDNG RG+ + + + Sbjct: 300 NELYRRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKV 359 Query: 324 LKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYG 383 KS +D+I+GK+GRFR+ +LGKRVDYSGRSVI VGP L LH+CGLP+++A+ELF+ F+ Sbjct: 360 YKSFSDVIEGKEGRFRETMLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIR 419 Query: 384 KLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIE 443 L + LA+ I AK + +E +VW IL EV+R HP+LLNRAPTLHRLGIQAF+P+L+E Sbjct: 420 GLIRQHLASNIGVAKSKIREKEPIVWGILQEVMRGHPILLNRAPTLHRLGIQAFQPILVE 479 Query: 444 GKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPS 503 G+AI LHPLV +NADFDGDQMAVHVPL+LEAQ EAR LM S N+LSPA G+PI VP+ Sbjct: 480 GRAICLHPLVRKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPT 539 Query: 504 QDVVLGLYYMTRDC 517 QD+++GLY +T Sbjct: 540 QDMLMGLYVLTSGN 553 >UniRef50_B7XHV6 DNA-directed RNA polymerase n=2 Tax=Enterocytozoon bieneusi H348 RepID=B7XHV6_ENTBH Length = 1270 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 199/1438 (13%), Positives = 447/1438 (31%), Gaps = 253/1438 (17%) Query: 17 FDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYK 76 +K + I S E+ ++++ + P +G++ ++ Sbjct: 2 ISNLKFKWYTKQEILDMSEIEITVGKSLD-KFGHPIPNGMYDLKMGP------------- 47 Query: 77 RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLR--- 133 CE CG+ Q GHI + + I + + + Sbjct: 48 --CESDQQCESCGLNQLQCP---GHFGHINIQR-VLNPLVFDVTYLLIRAMCNHCNKLKL 101 Query: 134 ----------DIERVLYF------ESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFD 177 ++E +++ E+Y+ +E + + +R++ ++ + + + Sbjct: 102 TTIEKLNFYLELESCIFYNKPPTIENYIELENILLSEKRKEERDLSKHTAIINSWLKKSQ 161 Query: 178 AKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLL----------EAF 227 ++ ++ + Q + + ++ + + + L F Sbjct: 162 LRIKCPLCNSITWKIKKGQYFQIMNDDPVDGLKLVSINNIYDELLNLYNNEKILLSKMYF 221 Query: 228 VQSGNK--PEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDL 285 + + W+ + +LPV+P RP + LN L ++N + Sbjct: 222 IDDNVENGLAWLFIDILPVIPNKFRPA-KKRNDFLYENPLNTLLSTILNFSTL------- 273 Query: 286 AAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGK 345 + LQ V DN + +++ K+G FR N++GK Sbjct: 274 ---SLTNDKYISELQYRVSLYFDNTNPSSC----------GIKQILEKKEGLFRNNIMGK 320 Query: 346 RVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVE--- 402 RV+YS RSVI+ P + + GLP A +L P K+ + + I + Sbjct: 321 RVNYSARSVISPDPCISTDEIGLPLVFANQLTFPEKINKMNIEHMRKLIINGADVYPGAN 380 Query: 403 -------------------------------REEAVVWDILDEVIREHPVLLNRAPTLHR 431 + + I VL+NR PTLH Sbjct: 381 FVKELDEDNINKIISLKHLSKSKRIDLSNLISSNLEKYVVYRHAINGDRVLVNRQPTLHI 440 Query: 432 LGIQAFEPVLIEG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNI 490 + + +++ K ++LH + C YNADFDGD++ +H+P + A E + N Sbjct: 441 GSLMGHKIKVLKDEKTLRLHYVNCKPYNADFDGDEINIHLPQSYLAMAEIDQICKVENVF 500 Query: 491 LSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKV 550 L P+ G+PI +QD ++G ++++ + K E + + S + +L ++ Sbjct: 501 LIPSTGQPIRGLAQDHIIGAAMLSQE-LFNKEEYIHIL-----HNALYSHIGTLITKI-- 552 Query: 551 RITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSI---------VNQALGKKAI 601 I + + ++V+ + + +P P ++++ + Sbjct: 553 TIFKKNIYSGKDIVSSILINLNLNINQVFTSKIPNLPPIVFENGIMKSGVLDKSTIGPTL 612 Query: 602 SKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEV 661 + +++ I G K + + Y G ++G DD+++ + ++ + Sbjct: 613 NSLIHAVQAIYGCKMSDLLLTAFGRMVNVYLLLKGFTLGYDDLLLNDFGESLLEKELVHR 672 Query: 662 AEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNS 721 + + + + + + K N Sbjct: 673 DNGTSTLHTKDINIL--LRETNETLSKLQQMLCNI----------------TYKTSFNNH 714 Query: 722 IYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARK 781 + + SG++G+ + Q++ G + P+ G ++ + Sbjct: 715 MLSIILSGSKGNLVNLSQISICLGQQELEGKKV---PVQ---ISGKSLPTF--------- 759 Query: 782 GLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLG 841 D L+ G++ R + C ++ + L Sbjct: 760 TAMDYKLRLEAGGFVYNRFLTGLTP-HSLYFHCMAGREGLV------DTAIKTANSGYLQ 812 Query: 842 RVTAE--DVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCY 899 R A+ + + D + ++ D Sbjct: 813 RCMAKHLEGVIKCYDDTIRNGQRIISFVSSDK---------------------------- 844 Query: 900 GRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIK 959 G+++G++AAQSIGEP TQ+T+ TFH+ G S+ +++ + Sbjct: 845 ---------YQYGDSVGILAAQSIGEPSTQMTLNTFHLAGVGSQNVTLGIPRLREIIMVA 895 Query: 960 LSNVKS--VVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETV 1017 ++K+ +V + ++ + I KV V + + + Sbjct: 896 SKSIKTPMIVMELPNTIDKTKIVDSFRIISIYDVINEIKVEESFVKSSVSDQYEKQIKLS 955 Query: 1018 ANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPA 1077 + + + + + + + + + + ++ + S R D Sbjct: 956 LMCNDINDKLFQYIKAVLNKSLIKNIDKLLKHRNRQNDINDENISISVNRDNENYDSSTT 1015 Query: 1078 LKIVDAQGNDVLIPGTDMPAQYF----LPGKAIVQLEDGVQISSGDTLARIPQESGGTKD 1133 D+ N+ I + + + ++ I + T Sbjct: 1016 ENEDDSNTNNFTINSISDSELKNTCCDDSDGDENSYDANSNVKNDESYNNINCYT-KTNR 1074 Query: 1134 ITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKW 1193 + L ++ F + + + K +I+ + + Sbjct: 1075 LVFILHYPSN-FNHNILNLVETILQNLFVKEISDF---KSYNMISIDNSKSKLILEGNNF 1130 Query: 1194 RQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHI 1253 L + + + I G+ A I+NE++ V+ + G+ I+++H+ Sbjct: 1131 TSLYSTKAICMNPEIFYHATSNDIYAIFLHLGIEACRITIINEIKAVFDIYGIIISEEHL 1190 Query: 1254 EVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKAS 1313 E+I M T F N Sbjct: 1191 ELIADYMCHNGTYQPFNRYTF------------NMN------------------------ 1214 Query: 1314 LATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMR 1371 +S I SF+ + + EA +D++ N+ VG I GTG + Sbjct: 1215 ---DSIIQKMSFESCFKNIKEAVTFQLKDKISVPSANITVGNKIQNGTGLFELLYNID 1269 >UniRef50_A6R8S3 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus NAm1 RepID=A6R8S3_AJECN Length = 1573 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 212/1347 (15%), Positives = 414/1347 (30%), Gaps = 282/1347 (20%) Query: 202 REELNETNSETKRKKLTKRIKLLEAFVQSGNK---------PEWMILTVLPVLPPDLRPL 252 ++ + + L ++ + + V P+ + + V P RP+ Sbjct: 324 QQFMPSPEVYAALRLLFEKEQEVLDLVYDSRPKSKHRPRVTPDMFFIKNILVPPNKYRPI 383 Query: 253 VPLDGGRFATSDLNDLYRRVINRNNRL-----KRLLDLAAPDIIVRNEKRMLQE------ 301 + N + R++ +++ +R D +R+ + +LQ Sbjct: 384 AATGSNDIIEAQQNISFTRIMKLCDQINQISRERQGDSTESVTRLRDYRDLLQAIVQLQD 443 Query: 302 AVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYL 361 AV++L+D R + + ++ K G FR+N++GKRV+++ RSVI+ P + Sbjct: 444 AVNSLIDRDRNPNQGVAGIQNE-DGIKQRLEKKDGLFRKNMMGKRVNFAARSVISPDPNI 502 Query: 362 RLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPV 421 ++ G+P A +L P W++ + VI V Sbjct: 503 ETNEIGVPLVFAKKLTYPEPVTNHNY---------------------WELKNAVINGPDV 541 Query: 422 LLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEAR 481 G A E +++ V L ++Q E Sbjct: 542 Y---------PGAAAVE-------------------------NEIGQVVSLKFKSQEERL 567 Query: 482 ALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEA-ERLYRSG 540 A+ N +LSP+N + S+ ++ + + + ++L P R +G Sbjct: 568 AIA---NMLLSPSNFKMKRSRSKKLLYNC--LRPENSLTVTDKILLMKPAILRPRKLWTG 622 Query: 541 LASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKG-LPYSIVNQALGKK 599 + + E N ++TS G +I G L I++ A Sbjct: 623 KQVISTIMMNITPERFYGLNLTGKSRTSGDRWGEGSEEGQVIFRDGELLCGILDSAQLGP 682 Query: 600 AISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEK----KHEIIS 655 + ++++ + I G + + + GIDD+ + +K + + + Sbjct: 683 SPGGLIHSVHEIYGHVVAGKLLGVLGRLLTKFLHMRAFTCGIDDLRLTKKGNEDRRKKLQ 742 Query: 656 EAEAEVAEIQEQFQSGLVTAGERYNKVID--IWAAANDRVSKAMMDNL---------QTE 704 EAE + ++ + T E + + A D +A +D + Sbjct: 743 EAEHIGRHVALKYVTLDQTKFEDEEAELKRRLEDALRDDEKQAGLDAVLNSQAADISSDI 802 Query: 705 TVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM--------------AKP 750 T EK +N + M SGA+GS ++ G P Sbjct: 803 TAACLPVGLEKPFPWNQMQTMTTSGAKGSVVNANLISCNLGQQVLEGRRVPVMISGKTLP 862 Query: 751 DGSIIE------TPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVA 804 + ++ F G+ +Y+ R+GL DTA+KT+ SGYL R L+ Sbjct: 863 SFRPFDTNLMASGFVSGRFLTGIKPQEYYFHAMAGREGLIDTAVKTSRSGYLQRCLIKGM 922 Query: 805 QDLVVTEDDCGT-HEGIMMTPVIEGGDVKEPLRDRVLGR--VTAEDVLKPGTADILVPRN 861 + L D+ + + G D E + + L A + Sbjct: 923 EGLKAEYDNSVRETADGSVMQFLYGEDGLEITKQKHLQDFPFLAHNFWSVVEELNGSDEF 982 Query: 862 TLLHEQWCDLLEENSVDAVKVRSVVSC--------------------------------- 888 + +++ + + C Sbjct: 983 NRVKSDKAGDWNRHAIKKYRKTGKLDCVDPALSLFPPGSCYGSTSETFAMALKLYQKENP 1042 Query: 889 --------DTDFGVCAHCYGRDLARGHI---INKGEAIGVIAAQSIGEPGTQLTMRTFHI 937 + G+ + R + ++ + GE++G++A QSIGEP TQ+T+ TFH+ Sbjct: 1043 DQILKEKGKVEKGISKKDFARVMNLKYMRSVVEPGESVGIVAGQSIGEPSTQMTLNTFHL 1102 Query: 938 GGAASRAAAESSIQVKNKGSIKLSNV----------KSVVNSSGKL--VITSRNTELKLI 985 G +++ +++ + + K + G++ S+ T +++ Sbjct: 1103 AGHSAKNVTLGIPRLREIVMTASNQILTPTMTGVLRKELTEKDGRIFAKAISKLTIAEVV 1162 Query: 986 DE---------------------------FGRTKESYKVPYGAVLAKGDGEQVAGGETVA 1018 D E Y + +L + V + Sbjct: 1163 DTLRVHERVSSGSSHGMAKIYDLEIDFFPPEEYTEEYAIQIEDILKTLQHKFVPRLIKLT 1222 Query: 1019 NWDPHTMPVITEVSGFVRFTDMIDGQT-----ITRQTDELTGLSSLVVLDSAERTAGGKD 1073 + +S F I T TR+ + D E K Sbjct: 1223 RAELKKRTDEKSLSAFSAAQPDIGTSTGVVEEPTRRFGHEARDADADDDDDEEDQDDAKR 1282 Query: 1074 LRPALKIV-------DAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIP- 1125 + G + +I G D + G ++ D + Sbjct: 1283 AMSHMNRSNQVSYEAPDDGEEDIIRGQDSQEPDSDSDEETDGNHHGEHAATEDVDMQDTD 1342 Query: 1126 --------QESGGTKD-ITGGLPRVADL-FEARRPKE---------------PAILAEIS 1160 Q+S ++D ITG + F ++ K L E + Sbjct: 1343 TGSDSEKLQKSKQSEDTITGKYAEITKFKFSLKKGKSCHIQLRYDISTPKLLLLPLVEDA 1402 Query: 1161 GIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDI 1220 S + KG D +P + L + E + + S + D+ Sbjct: 1403 ARTSVIQFIKGLGACSYIEGDRENPAHIVTDGVNLLAMREYQ--DFVYPHSLYTNSIADM 1460 Query: 1221 LRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQV 1280 L + GV A I+ E+ V+ + ++++H+ +I M Sbjct: 1461 LVMYGVEAARACIIREMAAVFDGHSISVDNRHLNLIGDVMTH------------------ 1502 Query: 1281 EYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGK 1340 G A L+ + S SF+ T L +A + Sbjct: 1503 --------------AGSFRAFNRMGLV------KDSTSPFMKMSFETTVGFLRDAVLERD 1542 Query: 1341 RDELRGLKENVIVGRLIPAGTGYAYHQ 1367 D L G +++GR+ GTG Sbjct: 1543 CDNLNGPSSRIVMGRVGTVGTGAFDVL 1569 Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 23/157 (14%), Positives = 48/157 (30%), Gaps = 24/157 (15%) Query: 14 TEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCG 73 + + + + S + I++ S + T++ P GL+ + Sbjct: 9 SSSIEGVDFRVLSNEEIKTISVKLIYNTPTLDS-LNNPVPGGLYDPALGA---------- 57 Query: 74 KYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLR 133 IC C + GHIEL ++ F + LL Sbjct: 58 ------WGDHICTTCRLNSWSCN---GHAGHIELPVHVYNVTFFDQ----LFRLLRAQCV 104 Query: 134 DIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALE 170 R + ++ L + ++ E +D++E Sbjct: 105 YCHRFRMSRADIMSYTCKLRLLQYGLVEEAAAIDSME 141 >UniRef50_Q4A5S8 DNA-directed RNA polymerase subunit beta' n=3 Tax=Bacteria RepID=RPOC_MYCS5 Length = 1492 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 285/788 (36%), Positives = 432/788 (54%), Gaps = 101/788 (12%) Query: 5 LKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGP 64 + ++ ++ I ++LA+ + + SWS G V KPETINY+T+KPE+DGLF IFGP Sbjct: 1 MSNTFSKNNVKKIKQISLSLATNEDVLSWSNGVVSKPETINYKTYKPEKDGLFDEIIFGP 60 Query: 65 VKDYECL-CGKYKRLKHRGVICEK---CGV---EVTQTKVRRERMGHIELASPTAHIWFL 117 V D++C C + IC++ C ++ RR RMGHI L +P H WF Sbjct: 61 VTDFKCPICFTKYKKSDENTICKRTTSCEKIQPKILPKISRRSRMGHIALNNPVVHFWFF 120 Query: 118 KSLPSRIGLLLDMP---------LRDIERVLYFESYVVIE-GGMTNLERQQILTEE---- 163 K S I LL + D+E+++Y++S++V+E GG+ +L++ I+ Sbjct: 121 KINHSTISKLLGLKVAGSNKPVTKSDLEKIIYYKSHIVLETGGLKSLQKNTIIDINDAAD 180 Query: 164 -----------------------------------------------QYLDALEEFGDEF 176 +Y + +EE+ Sbjct: 181 IYAGALEEILEFNKDNKDGYEEILDTLNDLKEYAASKTGQDYGIDFYEYNEIIEEYSQA- 239 Query: 177 DAKMGAEAIQALLKSMDLEQECEQLREELNETNSETK----------RKKLTKRIKLLEA 226 G++AI+ LLK++DLE+E +++++E++ N + K R KL KR+ ++++ Sbjct: 240 KIGTGSKAIEYLLKNIDLEKESKEIQDEIDTINDQNKYEISSSEALKRNKLYKRLAIIKS 299 Query: 227 FVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLA 286 F++SG KPE +++ LPV+P DLRPLV LDGGR +TSD+N+LYRR+I RNNRL++ + Sbjct: 300 FLKSGQKPENLLIYNLPVIPADLRPLVQLDGGRHSTSDINELYRRIIIRNNRLEKWYESD 359 Query: 287 APDIIVRNEKRMLQEAVDALLDNGRRG-RAITGSNKRPLKSLADMIKGKQGRFRQNLLGK 345 AP +I +NE RMLQEAVDAL+DN R+ +T + P KS++D + GK+GRFRQNLLGK Sbjct: 360 APVLIKQNEFRMLQEAVDALIDNSRKKPGPVTSKDGHPFKSISDALVGKKGRFRQNLLGK 419 Query: 346 RVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKL-ELRGLATTIKAAKKMVERE 404 RVDYSGRSVI VGP+L+++Q G+P+ MA +LF+P+I ++ + ++KAAKK+V+ Sbjct: 420 RVDYSGRSVIVVGPHLKMYQVGIPRDMAAKLFEPWIINRIMKEEEGINSVKAAKKLVDSL 479 Query: 405 EAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGD 464 ++W +++V+ PVLLNRAPTLHRL IQAF+PVLI GKAI++HPLV A+NADFDGD Sbjct: 480 NPIIWPYVEQVLENRPVLLNRAPTLHRLSIQAFQPVLIRGKAIKIHPLVTTAFNADFDGD 539 Query: 465 QMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEG 524 QMAVHVP++ A EA+ LM+++ NIL P +GEPII PSQD++LGLYY+T + N K EG Sbjct: 540 QMAVHVPISKAAVREAQELMLASKNILGPKDGEPIINPSQDIILGLYYLTIEKANQKNEG 599 Query: 525 MVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVP 584 E Y + +L RV + ++ +K + +TVG+ IL P Sbjct: 600 KFYPSFNEMMLAYENKYINLATRVVLPVSALKKIS-ILQKTDAPYIYSTVGKFILNNAFP 658 Query: 585 KGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFA------DQIMYTGFAYAARSGAS 638 + + + K + G + + I F Y A Sbjct: 659 RDFDFVFGKRVTEKLTSTN-------EHGEEVVSLKTKIDTSEHDIKRYVFNYGDNFTAK 711 Query: 639 VGIDDMVIPEKKHEI------ISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDR 692 + D+ +P K EI I E + I++ Q + + + ++ + D Sbjct: 712 IKEADVNLPLNKKEIAKIVRNIYEKYVPIVNIEDISQVINKIDKTQLDNLHELCSELKDF 771 Query: 693 VSKAMMDN 700 + DN Sbjct: 772 NGNKLEDN 779 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 149/521 (28%), Positives = 234/521 (44%), Gaps = 49/521 (9%) Query: 585 KGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDM 644 K ++ K +K+L + D I GF ++ +SG ++ ++D+ Sbjct: 804 KDEESIFNHKYWELKHYTKLLERVWFRYS-NYVSTVLDVIKDLGFKFSTKSGITISMNDI 862 Query: 645 VIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTE 704 V + E I +AE E +++ F+ G +T ERY I W+ + + K + + + Sbjct: 863 VTSKTTKERIKKAEEETEALKDYFKKGYLTDDERYTLTIKKWSDVKESIEKELKKVVDSN 922 Query: 705 TVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDG------------ 752 N ++MM SGARG+ + QLAGMRGLM Sbjct: 923 L-------------DNPLFMMLSSGARGTYSNFTQLAGMRGLMNNNTKILKADAENDRVV 969 Query: 753 -SIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTE 811 SI+E P+ ++F +GL +++ STHGARKGL DTAL TA SGYLTRRLV+VAQ +V+ E Sbjct: 970 RSIVEIPVKSSFLDGLTAYEFYSSTHGARKGLTDTALNTAKSGYLTRRLVEVAQGVVIRE 1029 Query: 812 DDCGTHEGIMMTPVIE--GGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWC 869 +DCG+ G ++ + + + E L++R+ GR TA + ++V + L+ + Sbjct: 1030 EDCGSDYGFVVKDIKDTKTNTIIESLQERIEGRFTAVPIYDQ-NGKLIVKESELITPEIA 1088 Query: 870 DLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQ 929 + + V++RSV+SC T G+C CYG+DLA I+N GEA+GVIAAQSIGEPGTQ Sbjct: 1089 SEIVAKGITKVEIRSVLSCHTRNGLCKKCYGKDLATNRIVNIGEAVGVIAAQSIGEPGTQ 1148 Query: 930 LTMRTFHIGGAASRAAAESSIQV--------------KNKGSIKLSNVKSVVNSSGKLVI 975 LTMRTFH GG A + S VK + K Sbjct: 1149 LTMRTFHTGGVAGGEDITGGFGRLIELIDAYDQPWGTPAEISRHYGKVKKIETQKNKKGK 1208 Query: 976 TSRNTELKLID---EFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVS 1032 S + + + + Y V L G++V G+ ++ ++ V Sbjct: 1209 ESGQFNISVEYFDEDGNKQTHQYLVKSSQRLRVKQGDEVVAGQKLSEGPIVLNELLESVD 1268 Query: 1033 --GFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGG 1071 + + Q + +++ Sbjct: 1269 TRAVQNYILKEVQKLYRLQGIAIADKYIEIIIRQMLSKISI 1309 Score = 227 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 98/367 (26%), Positives = 164/367 (44%), Gaps = 19/367 (5%) Query: 1021 DPHTMPVITEVSGFVRFTDMIDGQTITRQTD---ELTGLSSLVVLDSAERTAGGKDLRPA 1077 D T +I + + E ++ + + + ++R Sbjct: 1045 DTKTNTIIESLQERIEGRFTAVPIYDQNGKLIVKESELITPEIASEIVAKGITKVEIRSV 1104 Query: 1078 LKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDTLARIPQESGGT---KD 1133 L G G D+ + V + I G L +GG +D Sbjct: 1105 LSCHTRNGLCKKCYGKDLATNRIVNIGEAVGVIAAQSIGEPGTQLTMRTFHTGGVAGGED 1164 Query: 1134 ITGGLPRVADLFEARRPK--EPAILAEISGIVSFGKETKGKR----------RLVITPVD 1181 ITGG R+ +L +A PA ++ G V + K K+ Sbjct: 1165 ITGGFGRLIELIDAYDQPWGTPAEISRHYGKVKKIETQKNKKGKESGQFNISVEYFDEDG 1224 Query: 1182 GSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVY 1241 ++ ++ ++L V +G+ V G +S+GP +++L AV YI+ EVQ +Y Sbjct: 1225 NKQTHQYLVKSSQRLRVKQGDEVVAGQKLSEGPIVLNELLESVDTRAVQNYILKEVQKLY 1284 Query: 1242 RLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGAT 1301 RLQG+ I DK+IE+I+RQML K +I++ G S F G V+ + N L + GK A Sbjct: 1285 RLQGIAIADKYIEIIIRQMLSKISIIDPGDSSFYSGSLVDAFVYQKENGILLSQGKKPAY 1344 Query: 1302 YSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGT 1361 + G + L ++S+++AAS+QET ++L +A++A + D L GLKEN+I+G IPAGT Sbjct: 1345 GVVKIKGAKQTPLLSDSWLAAASYQETAKILVDASIAKRTDNLEGLKENIIIGYKIPAGT 1404 Query: 1362 GYAYHQD 1368 + ++ Sbjct: 1405 NSNFEEN 1411 >UniRef50_Q5YF58 DNA-directed RNA polymerase n=6 Tax=Iridoviridae RepID=Q5YF58_ISKNV Length = 1168 Score = 497 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 174/977 (17%), Positives = 330/977 (33%), Gaps = 142/977 (14%) Query: 16 EFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKY 75 + + + D + + S E+ K K E L+ ++ + Sbjct: 2 DIGRFVFGMYTADDVLNTSVVEITKAAL------KQEPGALYDPKLGPFML-------PS 48 Query: 76 KRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDI 135 C C + GHIELA I K + + ++ + Sbjct: 49 DDEPVYDQRCVTC-----DSVTCPGHFGHIELAQDV--ILHYKECVAFLRVICHSCGAHV 101 Query: 136 ERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLE 195 + + + + + + + + + E Sbjct: 102 PGTRFESALRRLPPQHIQCQVCGL----------------YQPVVRCGSSVTDPAYIVTE 145 Query: 196 QECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPL 255 C + + + +++T + + P +I+ VLP RP + Sbjct: 146 DYCGASHVHSDVEYARSVFQRVTPQTLAIVG--PKLTHPLNLIMKRFMVLPSCCRPPNKV 203 Query: 256 DGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRA 315 GG DL L ++ RN +L +P+ + + L+ + +DN + GRA Sbjct: 204 -GGSMVHDDLTLLISYIVKRNL---KLAAATSPEQRILYY-QALKGDILCYMDNSK-GRA 257 Query: 316 ITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALE 375 + ++ + L + + I K G R NL+GKR +Y+ RSV+ L L Q G+P ++A Sbjct: 258 VHVTSNKSLMGIKECITKKGGLLRHNLMGKRRNYTARSVVGPESTLALDQVGVPPQVADT 317 Query: 376 LFKPFIYGKLELRGLATTIKAAK-KMVEREEAVVWDILD-------EVIREHPVLLNRAP 427 L K + + K + + V ++ + V+LNR P Sbjct: 318 LTIEEPVTKYNIEHVRQMRATGHLKALYDVDGQVRHVVRCGLTLHRSLRDGDVVVLNRQP 377 Query: 428 TLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMST 487 TLHR + ++ G I+++ V +N DFDGD+ +++P +L A+ E LM Sbjct: 378 TLHRNSMLGMRVKVLPGNTIRVNLAVTHGFNMDFDGDEGNLYLPRSLSARAEVATLMSPY 437 Query: 488 NNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHAR 547 NILS + ++ QD VL LY M+ + + E ++ A +Y H R Sbjct: 438 TNILSDCSKGVEVLLVQDTVLALYMMS-MWPHTRLEQQFVSMCCMAVGVY-------HHR 489 Query: 548 VKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPK-GLPYSIVNQALGKKAISKMLN 606 + G+L + T R + + V + + ++ Sbjct: 490 ICTA---------GDLFRLMVPEGFTWRRYGIVFVNGHLADNSGPVTKRALSGGYNSIIR 540 Query: 607 TCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQE 666 T G K F D + + + S+G+DDMV+P ++ Sbjct: 541 TMALHRGQKAAGRFIDCAQFVAREWLSWFPFSMGLDDMVVPGARN--------------- 585 Query: 667 QFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMA 726 TA Y + + +A D + + T++ + +M Sbjct: 586 -------TAEAXYRHHMMLMESARDEIEVVSILESIKNTLMAIPLAPT------CMSVMT 632 Query: 727 DSGARGSAAQIRQLAGMRGLMAKPDGS---------------------------IIETPI 759 +G++G A I Q++ + G + Sbjct: 633 SAGSKGDAFNIMQISMLLGQQYVDGMRVQREIDYGYRSLPHYKPVEVHSVEAKYESRGFV 692 Query: 760 TANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEG 819 ++F +GLN + F R+G+ T+ T +GY RR+V ++DL + D Sbjct: 693 RSSFMDGLNPREAFFHAKCGREGMISTSQMTGVTGYAERRMVKFSEDLRIANDLSVRDAN 752 Query: 820 IMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADIL----------VPRNTLLHEQWC 869 + ++ GG +P+ G + + L + E+ Sbjct: 753 GNIVQLLYGGHGMDPMMCWQDGCPVNFERMAMQIDQSLDICMMIPMDMAQAAQSVCERLA 812 Query: 870 DLLEENSVDAV--KVRSVVSCDTDFGVCAHCYGR-----DLARGHIINKGEAIGVIAAQS 922 + D+V + ++ C+ D + G +G++ AQ+ Sbjct: 813 PIFPPLVRDSVMERHARIIKQGAAQFPCSDADRWAQEVYDAYVRALCVPGSPVGIVCAQA 872 Query: 923 IGEPGTQLTMRTFHIGG 939 G TQ T+ FH G Sbjct: 873 FGARQTQSTLNIFHKAG 889 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 33/151 (21%), Positives = 57/151 (37%), Gaps = 29/151 (19%) Query: 1220 ILRLRGVH--AVTRYIVNEVQDVYRLQGVKINDK---HIEVIVRQMLRKATIVNAGSSDF 1274 +L GV V N V DVY +G+ + H V Sbjct: 1036 LLYALGVQGVDVDNTACNNVWDVYEAKGLIAAKRFLTHSMVEC----------------- 1078 Query: 1275 LEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTE 1334 G+ V + +++ + +G A + IS A+F+E+ +L Sbjct: 1079 -LGDDVHMAHIRVLVDRMTFSGLPTAVDRYTMRSC------ETGPISKATFEESLDILVS 1131 Query: 1335 AAVAGKRDELRGLKENVIVGRLIPAGTGYAY 1365 +AV G+RD G+ ++ G+++P GTG Sbjct: 1132 SAVRGERDNNTGVGACLVAGKMLPLGTGSCR 1162 >UniRef50_Q32RG1 DNA-directed RNA polymerase subunit beta' n=2 Tax=Streptophyta RepID=RPOC1_ZYGCR Length = 715 Score = 496 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 258/678 (38%), Positives = 361/678 (53%), Gaps = 92/678 (13%) Query: 12 TKTEEFDAIKIALASPDMIRSWSF---------GEVKKPETINYRTFKPERDGLFCARIF 62 + I+I LASP+ IRSW+ G V KP TI+Y+T KPE+DGLFC R+F Sbjct: 2 IPEDHLQYIRIGLASPEQIRSWAERRLPNGELIGRVSKPYTIHYQTHKPEKDGLFCERVF 61 Query: 63 GPVKDYECLCGKYKRL---KHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKS 119 GP+K C CGKY+ K CEKCGVE T+ +VRR RMG+I+L P H+W+LK+ Sbjct: 62 GPIKSGVCACGKYQGTISTKDSPKYCEKCGVEFTEARVRRHRMGYIDLQCPVTHVWYLKN 121 Query: 120 LPSRIGLLLDMPLRDIERVLYFESYVVIEG-GMTNLERQQILTEEQYLDALEEFGDE--- 175 PS I LL+ PL+DIE ++Y++S++ L R + Y D + D+ Sbjct: 122 RPSVIARLLNQPLQDIESLVYYDSFLARPVTNEPTLIRLLPTQSKLYKDRSQSTFDKPLE 181 Query: 176 --------------------------FDAKMGAEAIQALLKSMDLEQECEQLREELN--- 206 + GA+ I LL ++L R + Sbjct: 182 LFLFDEPWQSALSNFFSPKWFHLIQIREMLTGADVIHKLLSGLNLTNAMFHARNQWKHLA 241 Query: 207 --------------------------ETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT 240 + + + ++ + +RI L+ +QS +PEWM+L Sbjct: 242 KKAPESQSEVIEAQGPVPQAEEEKQRDQSIQQQKDAVLRRITLIRDLLQSQTQPEWMVLR 301 Query: 241 VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ 300 LPVLPPDLRP++ L G+ SDLN+LYRRV+ RN + + + P I +K++LQ Sbjct: 302 TLPVLPPDLRPILELKDGQLIRSDLNELYRRVLYRNQLICQF-SVEDPFCISMMQKKLLQ 360 Query: 301 EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360 +A+D+LL NG G I N RP KSL+D+IKGK+GRFR+NLLGKRVDYSGRSVI VGPY Sbjct: 361 QAIDSLLANGAGGNIIRDRNMRPYKSLSDIIKGKKGRFRENLLGKRVDYSGRSVIVVGPY 420 Query: 361 LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP 420 L L+QCGLP++MA+ELF+PF+ L + A +AAK M++R +VW IL ++ +H Sbjct: 421 LSLYQCGLPREMAIELFQPFVIRGLIINHFARNPRAAKSMIQRRHPIVWKILKMIVDDHL 480 Query: 421 VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480 V+LNRAPTLHRLG+QAF+PVL+ +AI LHPLVC +NADFDGDQMAVHVPL+LEAQ EA Sbjct: 481 VILNRAPTLHRLGVQAFQPVLVRERAIHLHPLVCTGFNADFDGDQMAVHVPLSLEAQAEA 540 Query: 481 RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVN--------------------A 520 LM N+LSP G+ I+VP+QD++LGLY +T Sbjct: 541 HLLMSPYFNLLSPGTGDAIVVPTQDMLLGLYALTLGATLGIYSNINTYKYQSDVSFTQKT 600 Query: 521 KGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILW 580 + + + +A Y G+ + + + N L Sbjct: 601 DSKIITFSNFSDALTAYHQGIITSDLPIWLYCRPEIAVMNNSQGDCPVEAQYQPKGIYLN 660 Query: 581 MIVPKGLPYSIVNQALGK 598 + + + + + K Sbjct: 661 VYEHSQIRTDKLGKTVQK 678 >UniRef50_UPI000180C7E3 PREDICTED: similar to RNA polymerase I large subunit n=1 Tax=Ciona intestinalis RepID=UPI000180C7E3 Length = 1547 Score = 495 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 180/1086 (16%), Positives = 337/1086 (31%), Gaps = 184/1086 (16%) Query: 217 LTKRIKLLEAF-VQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINR 275 ++ + K F +Q + + + L+ LPV RP+ ++G +F S Y +V+ Sbjct: 91 ISDKEKNDGDFTIQPCSAVDVLFLSALPVPASRFRPIGCVNGRQF-ESPQTTAYSKVLMD 149 Query: 276 NNRLKRLLDLAAPDII-------------------------------------------V 292 L+ L+ + + Sbjct: 150 CVILRALIKRLSEANKENIEDEMEEEEEDVTKMGKLKLKMSSKKMDVISSIPGKTLPQKL 209 Query: 293 RNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGR 352 N LQ+ V++LLD+ + +++ K G FR++++GKRV+Y+ R Sbjct: 210 ENAWLRLQQHVNSLLDSDLDRLTSADDKT---PGIKQLLEKKDGLFRKHMMGKRVNYAAR 266 Query: 353 SVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWD-- 410 SVI+ PY+ ++ GLP A++L P + L + VV D Sbjct: 267 SVISPDPYIATNEIGLPMVFAVKLTYPCPVTPWNTKMLRQAVINGPMKHPGATHVVADGR 326 Query: 411 -------------------------------------ILDEVIREHPVLLNRAPTLHRLG 433 +L + +LLNR PTLH+ Sbjct: 327 TVLLSATDQSQREAVAKQLTATDTHGSKHEVFNKPKLVLRHIQTGDVMLLNRQPTLHKGS 386 Query: 434 IQAFEPVLIEG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILS 492 I A ++ G K ++LH C +YNADFDGD+M H P + + EA LM + LS Sbjct: 387 IMAHRVRVLPGEKTLRLHYANCKSYNADFDGDEMNAHFPQSELCRSEAYQLMSTDAQYLS 446 Query: 493 PANGEPIIVPSQDVVL-GLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVR 551 +G+P+ QD ++ G+ R + E LT Y+ L K Sbjct: 447 GKDGKPLSCLIQDHMVAGVNMCIRGRFFTQEEYQQLTYEALMHLPYKVKLI------KPA 500 Query: 552 ITEYEKDANGELVAKTSLKDTTVGRAIL-------------------------------- 579 + + +K +G+ + T + T L Sbjct: 501 LIKPKKLWSGKQIFSTIFLNITPNGLPLINLTGKSKIGPKNWQKEPARNAKVAPIHGVDM 560 Query: 580 ----WMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARS 635 +I L I+++A +++ Y I + + + A+ R Sbjct: 561 CESQVIIRNGELLCGILDKAHYGATEHGLVHAMYEIYSGEISGRLLTCLARLFTAFLQRY 620 Query: 636 -GASVGIDDMVI----PEKKHEIISEAEAEVAEIQEQFQSGLVTAGERY----------- 679 G ++G++D+++ + + ++I + + ++ + + E Sbjct: 621 RGFTLGVEDILVRDWANKGRTDVIQDTKDNGMQVVAKTLNVKKKNEEDITDALWDAHVAT 680 Query: 680 ----NKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAA 735 NK D AA + + G K N++ +M SGA+G A Sbjct: 681 KIIVNKTEDKLAAVDHAMKAVCNGANDQIAKWCTGGGLLKTFPQNNLQLMVISGAKGGAV 740 Query: 736 QIRQLAGMRGLMAK--------------PDGSIIE------TPITANFREGLNVLQYFIS 775 Q++ + G + P + I+ F G+ +YF Sbjct: 741 NCMQISCLLGQIELEGRRPPLMPSGRSAPSFMPYDTTIRAGGFISQRFLTGIRPQEYFYH 800 Query: 776 THGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPL 835 R+GL DTA+KT+ SGYL R L+ + L+++ D + + G D + Sbjct: 801 CMAGREGLVDTAVKTSRSGYLQRCLIKHLEGLLLSYDMTVRDSDGGVVQFLYGEDGIDIN 860 Query: 836 RDRVLGRVTAEDVLKPGT--ADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFG 893 + L + + V+ A + + K++ Sbjct: 861 KTSYLSQKQYDFVVDNYEAIAKQIPSLERAESAPCVRSIARKWAKYEKMKHKRDKRLRKH 920 Query: 894 VCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVK 953 L G + A E + A Sbjct: 921 PDEKRTSAFLNFSKQSESGSQSVIKQAWMGMEVEEKAKFEDKSSKLILPDAVISQYRPDL 980 Query: 954 NKGSIKLSNVKSVVNSSGKLVI---TSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQ 1010 GSI + + K + + + + R + K+ Y L GE Sbjct: 981 YFGSISDNFYNEMSKYVKKNPLNLPEEEDNKKSRVPSLNRLQTLLKMRYQRSL-CQPGES 1039 Query: 1011 V--AGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERT 1068 V +++ +G + + + + Sbjct: 1040 VGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASRHIKTPQITVPVMD 1099 Query: 1069 AGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQES 1128 G K + K + ++ + + + G G + + E Sbjct: 1100 HGQKRAKRLCKELTKVLLTQVLHKFTLDERLVVGGGE-----HGDRYRRCVITIHLLPER 1154 Query: 1129 GGTKDI 1134 KD+ Sbjct: 1155 QFAKDL 1160 Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 80/640 (12%), Positives = 182/640 (28%), Gaps = 137/640 (21%) Query: 822 MTPVIEGGDVKEP--LRDRVLGRVTAEDVLKPGTAD-ILVPRNTLLHEQWCDLLEENSVD 878 + G +V+E D+ + + V+ D + + + +++N ++ Sbjct: 944 IKQAWMGMEVEEKAKFEDKSSKLILPDAVISQYRPDLYFGSISDNFYNEMSKYVKKNPLN 1003 Query: 879 AVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIG 938 + + + + GE++G++AAQSIGEP TQ+T+ TFH Sbjct: 1004 LPEEEDNKKSRVPSLNRLQTLLKMRYQRSLCQPGESVGLLAAQSIGEPSTQMTLNTFHFA 1063 Query: 939 GAASRAAAESSIQVKNKGS-----IKLSNVKSVVNSSGKLVITSRNTEL----------- 982 G +++ IK + V G+ EL Sbjct: 1064 GRGEMNVTLGIPRLREILMVASRHIKTPQITVPVMDHGQKRAKRLCKELTKVLLTQVLHK 1123 Query: 983 -----KLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRF 1037 +L+ G + Y+ + + + + D + + + F Sbjct: 1124 FTLDERLVVGGGEHGDRYRRCVITIHLLPERQF--AKDLALTRDTVLRHIESNFFRVLLF 1181 Query: 1038 TDMIDGQTITRQTDELTGLSSLVV---------------------LDSAERTAGGKDLRP 1076 + + + + L+ + Sbjct: 1182 QIQKQLKKRESEVLLIDQRVAKDTARRAKAGDDNEPEAETFVDDTLEEMPDSRDKNKNTE 1241 Query: 1077 ALKIVDAQGNDVLIPGTDMPAQY------FLPGKAIVQLEDGVQISSGDTLARIPQESGG 1130 +I + G D + + + + E+ + + E+ Sbjct: 1242 DDEIDEEAGFDDGDATAEQQRRKKREDVDYEEQDDELPDENDDTVLVDQDDTTVVDETPM 1301 Query: 1131 TKDI-------TGGLPRVADLFEARRPKE-----------------------------PA 1154 + I T + V R K + Sbjct: 1302 DEQIDTEDEQATEQIDDVTAAIRVRAVKNLGHGSISIEDYEFDTNASGWCKVTLLMPLTS 1361 Query: 1155 ILAEISGIVSF------GKETKGKRRLVITPVDGS-DPYEEMIPKWRQLNVFEGERVERG 1207 + ++ +V F ++ G R ++ P G + + +FE E + Sbjct: 1362 VHVDVVSLVRFAASTSPVRQVAGISRCILVPAQGDTNAVNLVTEGINFYKIFENENILEV 1421 Query: 1208 DVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIV 1267 + + H + ++ G+ A R +V E+ +V+ + G++ Sbjct: 1422 NKLYSNCV--HSVAQMYGIEAARRVVVKEIANVFAVYGIE-------------------- 1459 Query: 1268 NAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQE 1327 V+ + + + G + + S + SF+ Sbjct: 1460 ------------VDQRHLNLIGDYMCYEGVYKPFNRMAI-------ESCVSPLQQMSFET 1500 Query: 1328 TTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQ 1367 T + L AA+ G +D L+ ++ G+++ GTG Sbjct: 1501 TMKFLNSAALYGLQDRLQSPSARIVTGQVVKGGTGNFSLL 1540 >UniRef50_B7T2U0 DNA-directed RNA polymerase n=68 Tax=Magnoliophyta RepID=B7T2U0_9ROSI Length = 707 Score = 495 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 253/709 (35%), Positives = 365/709 (51%), Gaps = 94/709 (13%) Query: 12 TKTEEFDAIKIALASPDMIRSWS---------FGEVKKPETINYRTFKPERDGLFCARIF 62 + ++I L SP I +W+ GEV + + I+ T KP+ GL C RIF Sbjct: 2 IDQSKHQQLRIGLVSPQQISAWANKTLPNGTIVGEVTEIDPIDLETNKPKVGGLLCERIF 61 Query: 63 GPVKDYECLCGKYKRLKH-----RGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFL 117 GP+K C CG + + C CGVE +++RR +MG+I+LA P H+W+L Sbjct: 62 GPIKSGVCACGISGKFGDPNEKRKRTFCGDCGVEFANSRIRRYQMGYIKLACPVTHVWYL 121 Query: 118 KSLPSRIGLLLDMPLRDIERVLYFESY--VVIEGGMTNLERQQILTEEQYLDALEEFG-- 173 + LPS I +LD PL+++E ++Y I T L + + E + + Sbjct: 122 RRLPSYIANILDKPLKELENLVYCNFAFARPITKKPTLLRLRGLFKYETPPEPWHWYASI 181 Query: 174 ------------DEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETK-------- 213 + GA AI+ L +DL E E E +E K Sbjct: 182 PPFLSPQGWHTLRNRELSTGASAIREQLGDLDLRVIIESSLAEWKELEAEWKELEAEWKE 241 Query: 214 ----------------------RKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRP 251 ++ L +R+ L + F+++ +PEWM+L++LPVLPP LRP Sbjct: 242 LEEEGLPGDPWQERTIQKIERRKRFLVRRMGLAKHFIRTSVEPEWMVLSLLPVLPPGLRP 301 Query: 252 LVPLDGG---RFATSDLNDLYRRVINRN-NRLKRLLDLAAPDIIVRNEKRMLQEAVDALL 307 SD+N LY RV++RN LK + P+ ++ +++ +LQEAVD LL Sbjct: 302 AAVHREELALSRRGSDINTLYGRVLSRNKEVLKFIRTPFTPEDVIMSQQILLQEAVDTLL 361 Query: 308 DNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCG 367 DNG RG+ I R KS +D+IKGK+GRFR+ LLGKRVDYSGRSVI VGP L LHQCG Sbjct: 362 DNGVRGQPIRDGQNRVYKSFSDVIKGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHQCG 421 Query: 368 LPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAP 427 LP+++A+ELF+PF+ L + LA I AAK + +E +VW+IL EVI+ HPVLLNRAP Sbjct: 422 LPREIAIELFQPFLIRSLIQQNLAPNIGAAKSQIREKERIVWEILREVIQGHPVLLNRAP 481 Query: 428 TLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMST 487 TLHRLGIQAF+P+L++G+AI LHPLVC +NADFDGDQMAVHVPL+LEAQ EAR LM S Sbjct: 482 TLHRLGIQAFQPILVQGRAIYLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSH 541 Query: 488 NNILSPANGEPIIVPSQDVVLGLYYMT---------------------------RDCVNA 520 N+L+P+ G+PI VP+QD+++GLY +T + + Sbjct: 542 MNLLAPSIGDPICVPTQDMLIGLYILTSGNRRGLCVNRYNLWNHRKGQTERVGHKKARDR 601 Query: 521 KGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILW 580 KG+ + +A YR L + + +R + + +++ Sbjct: 602 KGKEPLFYNSYDAIGAYRQKRIRLDSPLWLRWRLDQGLVVSRGLPVEVHYESSGTH---H 658 Query: 581 MIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGF 629 I L + +A+ + I L + ++ + QI G Sbjct: 659 QIYGHFLIVRSLKKAILCRYIRTTLGHLFFSREIEEAIQGFSQISSYGT 707 >UniRef50_UPI000186D8C3 DNA-directed RNA polymerase I largest subunit, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186D8C3 Length = 1659 Score = 491 bits (1264), Expect = e-137, Method: Composition-based stats. Identities = 194/1209 (16%), Positives = 377/1209 (31%), Gaps = 185/1209 (15%) Query: 113 HIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLER--QQILTEEQYLDALE 170 + + S S L L I++++ +S + + + +I++ ++ + Sbjct: 171 NPVNIPSSRSIESLRLKFLNEFIKQIILPKSCTHCKNPFKRIIKFQNKIISSITKVEIAK 230 Query: 171 EFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQS 230 +F D + Q ++ RE L + K L + + + Sbjct: 231 KFKDVPQNAFNKGSKQE-----TTFITPKESRETLR--KIWEESKDLVEELMPILKNSNL 283 Query: 231 GNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDL------YRRVINRNNRLKRLLD 284 + + V+ V PP RP+ + T D N Y I L++L Sbjct: 284 SYPTDLFFMDVILVTPPKARPVEFANVKAVDTGDYNSFPPEYKVYIDGIRGATVLEKL-- 341 Query: 285 LAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLG 344 LQ +D LLD+ ++ K+ + L +++ K+G R +++G Sbjct: 342 --------HECWLQLQNDIDTLLDSSAARISL----KKGISGLKQVLEKKEGVLRMHMMG 389 Query: 345 KRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAA------K 398 KRV+++ R+VIT P L + + G+P+ A +L P + L ++ Sbjct: 390 KRVNFAARTVITPDPNLNIQEIGVPEYFAKKLTYPVGVNFFNVEELRKMVQNGPDVYPGA 449 Query: 399 KMVEREEA---------------------------------VVWDILDEVIREHPVLLNR 425 ++E E + ++ VLLNR Sbjct: 450 TLIENENGSLIKLTGGEENRKKRIGISKLLLKSIEGDPTSFKTKKVHRHLLNGDIVLLNR 509 Query: 426 APTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALM 484 PTLHR I A +++ K +LH C AYNADFDGD+M +H+P T ++ E ++ Sbjct: 510 QPTLHRPSIMAHIVKILKNEKTFRLHYSNCKAYNADFDGDEMNLHLPQTELSRSEGYNIV 569 Query: 485 MSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASL 544 N+ L P +G P+ QD ++ +T + E + + + Sbjct: 570 NVANHYLVPKDGTPLGGLIQDHIVSTVRLTMKNQMFEKEDYHQLVYQGLSHKNGNIILLP 629 Query: 545 HARVKVRITEYEKD------------------ANGELVAKTSLKDTTVGRAILW------ 580 VK + K NG L +T R + Sbjct: 630 PCIVKPKKLWSGKQIISTILINIIPKDKDLISFNGNAKISVKLWETGSPRKWMCGEEFKS 689 Query: 581 ---------MIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAY 631 ++ L ++++ + + Y + G + + F + I A+ Sbjct: 690 DNEMSESSIILRKGILVTGVLDKQHFGATPFGLTHCLYELYGGECSSKFLNSIGRLSTAF 749 Query: 632 AARSGASVGIDDMVI----PEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWA 687 +G ++G++D+++ + + +II + EI + + Y ++ + Sbjct: 750 LQMTGFTLGVEDILVKAKADKSRKKIIEKLRKCGDEIAAKALGLEEIPNDLYERLEREYF 809 Query: 688 AAN-------DRVSKAMMDNLQTE-TVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQ 739 D+ K +++ E + + N++ +M SGA+GS Q Sbjct: 810 KNRTMFKGKLDQEYKVKLNSFTNEINKVCLPKGLISRFPENNLQLMVTSGAKGSTVNTMQ 869 Query: 740 LAGMRGLMAKPDGSI--------------------IETPITANFREGLNVLQYFISTHGA 779 ++ + G + I F G++ ++F Sbjct: 870 ISCLLGQIELEGKRPPFMISGKSLPSYKAFDTQPCAGGYIDNRFMTGISPQEFFFHCMAG 929 Query: 780 RKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRV 839 R+GL DTA+KT+ SGYL R L+ + + + D + I GGD E + Sbjct: 930 REGLIDTAVKTSRSGYLQRCLIKHLEGVSIGYDGTVRDHDGTVIQFIYGGDGLEVQKSTF 989 Query: 840 LGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVK--VRSVVSCDTDFGVCAH 897 E + A + L E + V + F + Sbjct: 990 FKPTHMEFLHNNLNAVVKKSVIESLKADVPYKKIEAYREEVMAGINLSKKVLAPFTSFSQ 1049 Query: 898 CYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGS 957 D+ + + G A + A + K Sbjct: 1050 SIKNDIRNKYFTKLDKRTGRTKA---------------YSKMLKKWNALADEDKQLYKQE 1094 Query: 958 IKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKES----------YKVPYGAVL-AKG 1006 ++L V S N + + + E + D + V +L Sbjct: 1095 VRLDPVTSKYNRNHDFGVITEKLETLIKDYLDAKCSNQSKKEKKKVKNMVEAKYMLSLCQ 1154 Query: 1007 DGEQV--AGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDS 1064 GE V +++ +G + + + +D Sbjct: 1155 PGEPVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMTASKSIKTPYVDV 1214 Query: 1065 AERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISS-----GD 1119 + K + GN + + + + + V Sbjct: 1215 PLKKKSEKK-------MLKNGNKLKKIFQRVT---LADVLETITVHEKVIFKPSPLFTYT 1264 Query: 1120 TLARIPQESGGTKDITGG----LPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRL 1175 + S D L V F KE L++ G E+K ++ + Sbjct: 1265 IRFKFLPHSFYKDDYLIKPKDVLEYVEKPFLILLCKEIRKLSKKFG--DIIFESKEEKMI 1322 Query: 1176 VITPVDGSD 1184 + D Sbjct: 1323 SKEDEEKDD 1331 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 70/565 (12%), Positives = 162/565 (28%), Gaps = 90/565 (15%) Query: 864 LHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSI 923 + E+ L+++ +S + Y + GE +G++AAQSI Sbjct: 1113 ITEKLETLIKDYLDAKCSNQSKKEKKKVKNMVEAKY-----MLSLCQPGEPVGLLAAQSI 1167 Query: 924 GEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL----------------------- 960 GEP TQ+T+ TFH G +++ Sbjct: 1168 GEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMTASKSIKTPYVDVPLKKKSEKKMLKN 1227 Query: 961 -SNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAV--LAKGDGEQVAGGETV 1017 + +K + + T + + +Y + + + D + + + Sbjct: 1228 GNKLKKIFQRVTLADVLETITVHEKVIFKPSPLFTYTIRFKFLPHSFYKDDYLIKPKDVL 1287 Query: 1018 ANWDP-------HTMPVITEVSGFVRFT--DMIDGQTITRQTDELTGLSSLVVLDSAERT 1068 + + +++ G + F + + D+ + S V + R Sbjct: 1288 EYVEKPFLILLCKEIRKLSKKFGDIIFESKEEKMISKEDEEKDDADNVDSAGVNFNKYRG 1347 Query: 1069 AGGKDLRPALKIV-------DAQGNDVLIPGTDMPAQYFLPGKAIVQLED---GVQISSG 1118 G + + + + + + D + S Sbjct: 1348 FGENHESSDEEEELDDDDATKEKVRNRHCENQEYDEPEESEEEKSDEENDTLYQDEPSEY 1407 Query: 1119 DTLARIPQESGGTKDITGGLPRV----ADL--FEARR---PKEPAILAEISGIVSFGKET 1169 + E G + + +P + +L E R+ ++ + V + Sbjct: 1408 EEETERRVELGEEESESRDIPEINLTSEELKNVENRKNFVLNTFPMIKKYDFDVVKEEWC 1467 Query: 1170 KGKRRL----------VITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHD 1219 + + I V IP R+ V++ E + ++ Sbjct: 1468 EMVVGIPLTLNKIDFSTILKVICGKSVLYQIPNVRRAFVYKNPSGEL--HLKTEGVNFNE 1525 Query: 1220 ILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQ 1279 + + + + R N+V V G++ + + + G Sbjct: 1526 MFKFYKMIDINRLYSNDVNKVVETLGIEAGVR------------IIVKELNDVFGVYGIT 1573 Query: 1280 VEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAG 1339 V++ + + + G L + S + SF+ +T L ++ V Sbjct: 1574 VDHRHLLLVADYMTNQGNYSPFNRIGL-------ADSSSPLQQMSFERSTGFLKKSLVRN 1626 Query: 1340 KRDELRGLKENVIVGRLIPAGTGYA 1364 + D + ++ GR +GTG Sbjct: 1627 QEDFMNSPSARIMAGRFCKSGTGCF 1651 Score = 86.1 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 37/215 (17%), Positives = 69/215 (32%), Gaps = 26/215 (12%) Query: 16 EFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKY 75 E + I + + I + S E+K N P +DGL+ + E Sbjct: 7 EINKIIFGIFNASDIYNLSVVEIKTSICFN-ALDHPLKDGLYDLVMGPSGMLKE------ 59 Query: 76 KRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDI 135 C C + GHI L P + F K + + LL + Sbjct: 60 --------SCLTCRQTIRNC---CGHFGHINLPLPVINPLFHKEVLT----LLKLSCSYC 104 Query: 136 ERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLE 195 ++ + + L + E + L+ E D + Q + + Sbjct: 105 YKLAIPPNLRNLFIYQMKLLDHGKMAEAEDLETKALNLKEMD----SNDAQNYVVKENYS 160 Query: 196 QECEQLREELNETNSETKRKKLTKRIKLLEAFVQS 230 + ++L + N N + R + R+K L F++ Sbjct: 161 EYLKELELDSNPVNIPSSRSIESLRLKFLNEFIKQ 195 >UniRef50_P25202 DNA-directed RNA polymerase III subunit RPC1 n=3 Tax=Giardia intestinalis RepID=RPC1_GIALA Length = 1741 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 194/1113 (17%), Positives = 351/1113 (31%), Gaps = 231/1113 (20%) Query: 384 KLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIE 443 KL L + ++ + + ++ +L NR P+LHR+ I F V+ E Sbjct: 646 KLNTVSLLQKDRRGRQAIANSLRPNDIVYRHLLPNDTLLFNRQPSLHRMSIMQFNAVIHE 705 Query: 444 GKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPS 503 + +P+VC+ +NADFDGD+M + EA+ EA LM S NI+SP +GE +I + Sbjct: 706 NRTFSFNPVVCSPFNADFDGDEMNIFYMQGQEARAEAGILMGSHENIISPRHGECMIGLT 765 Query: 504 QDVVLGLYYMTRDCVNAKGEGMV---------LTGPKEAERLYRSG-------------- 540 QD + G+Y ++ + + LY G Sbjct: 766 QDFLTGIYLLSGKGIFMTRQEYCQHVSYGCDGFGDATYGVSLYNYGREFIKSIHDRRGTE 825 Query: 541 -----LASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVN-- 593 + + I + +G+ V +K + + + Sbjct: 826 EDTVGFVKVPCLSQPCIVYPRQLYSGKQVLSVLMKGNDFDSVNINLEHGDKTYKKDSDRR 885 Query: 594 ----------------------QALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAY 631 + + + + + G + + Sbjct: 886 ALSVNDDYIIIQNSEHLVGRLTKTFLASSKNCIFYFLVQNYGPVSAARIMLRFAKVAARF 945 Query: 632 AARSGASVGIDDMVIPE----KKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWA 687 G ++GIDD++ + KK I+ E + E ++SG + A + Sbjct: 946 LMNYGFTIGIDDVMPSQRVLGKKEVIVQEGYEKAQEKIRDYESGKLEAIPG--------S 997 Query: 688 AANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM 747 + + + L ++ N +M+ G++GS I Q+ + G Sbjct: 998 TVQETLEATLNQILSNVRESCAQIALKELHFTNKPLIMSLCGSKGSPINIAQMIIILGQQ 1057 Query: 748 AKPDGSIIE--------------------TPITANFREGLNVLQYFISTHGARKGLADTA 787 + + I +F GL ++ R G+ D+A Sbjct: 1058 SFGGSRAPDDFYTRSTPYFYHYSKEPNAKGFILNSFYTGLLPFEFLAHARAGRDGVIDSA 1117 Query: 788 LKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDR--------- 838 KTA++GYL RRLV +DL V+ D + + G D +P++ Sbjct: 1118 CKTADTGYLQRRLVKCLEDLSVSYDFTVRNSKKSVVQFRFGHDGFDPIKLEVGTGQCFDL 1177 Query: 839 -----------------------VLGRVTAEDVLKPGTADILVPRNTLL------HEQWC 869 +L R AE L + L + Sbjct: 1178 DTLLRHIILLNRSQDLAEGAFPVLLDRYKAEAELDVLLNKDFYGQEACLIERSNVTSYFQ 1237 Query: 870 DLLEENSVDAVKVRSVVSCDTDFGVCA--------HCYGRDLARGHI---INKGEAIGVI 918 + + + V+ + R + R +I + G G + Sbjct: 1238 QSILPKLTTNTHIATTVAPALAASFLQTTLTKKDIDDFLRQVRRKYIRLNLEPGSPCGAV 1297 Query: 919 AAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSR 978 AAQS+GEP TQ+T+++FH G AS + + +K +V+ K+ Sbjct: 1298 AAQSVGEPSTQMTLKSFHHAGLASMNITQGVPR-----------LKEIVDGVVKISTPIT 1346 Query: 979 NTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFT 1038 EL + V E A V + R Sbjct: 1347 TVELHV-------------------------DVDKEELAAT-------VTEKYLEKARMM 1374 Query: 1039 DMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQ 1098 I T G S +++ ++ ++ +KI+ G +I + A Sbjct: 1375 KNIIECTY-------LGQISASIIECYSQSVCHIEVNLDMKIIADMGLAGIITVETVVAS 1427 Query: 1099 YFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAE 1158 KA + G SSG + +T R LF+ + K + Sbjct: 1428 ILHNDKAKKLV--GQDQSSGSVSIH-SATRFSVRPLTQ--SRDDLLFDIQSLKLLLPMIP 1482 Query: 1159 ISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPH 1218 +SGI + + + + S P + + + V D Sbjct: 1483 VSGISTCSRAVINEYKEFCQGATSSAPLTKYNLLVEGIGLQNILNVSGIDFTRTLSNNIV 1542 Query: 1219 DILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGE 1278 ++ G+ A I NE++ G+ ++ +HI ++ M Sbjct: 1543 EVANTLGIEAAVATISNEIKACMDSHGMAVDMRHIRLLADIMC----------------- 1585 Query: 1279 QVEYSRVKIANRELEANGKVGATYSRDLLGITKASLAT---ESFISAASFQETTRVLTEA 1335 + +LG T+ L +S I ASF++T L A Sbjct: 1586 -----------------------FRGRVLGFTRFGLTKMKADSVIMLASFEKTGEHLFNA 1622 Query: 1336 AVAGKRDELRGLKENVIVGRLIPAGTGYAYHQD 1368 A+ K DE G+ E++I+G+ + GTG Sbjct: 1623 ALGNKVDEANGVTESIILGKPMSMGTGSFSLLQ 1655 Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats. Identities = 93/541 (17%), Positives = 171/541 (31%), Gaps = 108/541 (19%) Query: 2 KDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARI 61 ++ + + + + + ++ S + + S ++ P + P +G+ R+ Sbjct: 12 SEIPQPVTEHRFPKRVEKLVFSVLSSNALMKLSEVQITTPILYEH-YPSPATNGVLDKRL 70 Query: 62 FGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRE---------RMGHIE------ 106 L + C CG + G I Sbjct: 71 G---------------LSDKVGKCATCGKDTKMCIGHFGTISLALPVFHPGLINDARTML 115 Query: 107 -----------------LASPTAHIWFLKSLPSRIGL---------LLDMPLRDIERVLY 140 L + F ++ P ++ Sbjct: 116 SIVCPFCSRVKISEADRLKYKVLNHKFSLAIVKEAQEQAKKQVNCPFCHAPSTICKKSQG 175 Query: 141 FESYVVIEGGMTNLERQ-QILTEEQYLDALEEFGDEFDAK----MGAEAIQALLKSMD-- 193 F + + ++ ++ ++ ++E + A I + D Sbjct: 176 FRVLREMHYEERATKILADVIKHQKDIEKIQELDQRLRNHVVDPIQALHILQKVPECDYP 235 Query: 194 -----LEQECEQLREELNETNSETKRKKLTKRIKLLEA------FVQSGN---------- 232 + ++ ++ + +L R F+ Sbjct: 236 YLGIPWQSRNVYASQQTPDSIASNDASQLFSRGSSKLLARTASRFIAQHQGISDRATRLT 295 Query: 233 ------KPEWMILTVLPVLPPDLRPLVPLD-GGRFATSDLNDLYRRVINRNNRLKRLLDL 285 +P+ +ILT +PV P LRP V G +L R++ N++LK + Sbjct: 296 SHAFLTRPQDVILTHIPVPPSCLRPSVQSGSGAGTTEDNLTSHLVRILTINDKLKEAMVS 355 Query: 286 AA-PDIIVRNEKRMLQEAVDALLDNGRRG-----RAITGSNKRPLKSLADMIKGKQGRFR 339 A V + L V L G + T S + + D +KGK GRFR Sbjct: 356 GAVATSKVYAKWDQLNMDVSLLYIGKIPGGVQPVKNKTDSGTKEGTGIIDRLKGKAGRFR 415 Query: 340 QNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKK 399 NL GKRV++SGR+VI+ PYL + Q +P+ +A L P I +R L I K Sbjct: 416 SNLSGKRVNFSGRTVISPNPYLSMQQVAIPRLIAQNLTFPEIVTSRNIRFLRELILNGKT 475 Query: 400 MVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNA 459 ++L + + N P L RLGI + +E KA++L +N Sbjct: 476 Y-----PGANEVL---LLNDTIRYN--PALKRLGIDVKQSRDMEAKAMELVSRCVDTFNL 525 Query: 460 D 460 + Sbjct: 526 N 526 >UniRef50_Q4A7B0 DNA-directed RNA polymerase subunit beta' n=5 Tax=Mycoplasma RepID=RPOC_MYCH7 Length = 1412 Score = 482 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 283/678 (41%), Positives = 382/678 (56%), Gaps = 86/678 (12%) Query: 1 MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60 M + A+ I +ALA+P+ + WS GEV +PETINY+TFKPER GLF Sbjct: 1 MNTKVSRQYAKISENSIQKISLALATPEDVLEWSRGEVHRPETINYKTFKPERGGLFDEL 60 Query: 61 IFGPVKDYECL-CGKYKRLKHRGVIC---EKC---GVEVTQTKVRRERMGHIELASPTAH 113 IFGP+ DY+C CG+ R + +C ++C G + RR MGHI L +P H Sbjct: 61 IFGPLVDYKCSVCGRKYRKSNENQLCIATKECKIRGSRILSKMARRYSMGHIALNAPILH 120 Query: 114 IWFLKSLPSRIGLLLDMPLRD-------------IERVLYFESYVVIE-GGMTNLERQQI 159 WF K S I LL + + + IE ++Y++S++V+E GG+ +LE+ +I Sbjct: 121 FWFFKIDHSIIAKLLGLKVFEGNSKVPTTITKTAIENLIYYKSHIVLETGGLKSLEQNKI 180 Query: 160 LTEEQ-----------------------------------------------YLDALEEF 172 + + L E Sbjct: 181 IDISEAGLIYKNALIEIIEFYPPGSEEHNALAESISELADVTSSKIGREYGVDYYELNEI 240 Query: 173 GDEF---DAKMGAEAIQALLKSMDLEQEC-----------EQLREELNETNSETKRKKLT 218 +EF GA AI+ LL +DL E +Q+ + KR KL Sbjct: 241 IEEFSSARIATGALAIEYLLDKIDLRAEKAAVEAELAGVQKQIYKNKKIILKNQKRDKLY 300 Query: 219 KRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNR 278 KR++++ AF+ SG P+ MI+ LPV+P DLRPLV LDG R +TSD N+LYRR+I RNNR Sbjct: 301 KRLQVINAFINSGQDPKMMIIRNLPVIPADLRPLVQLDGSRHSTSDCNELYRRIIIRNNR 360 Query: 279 LKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRG-RAITGSNKRPLKSLADMIKGKQGR 337 LKR AP II++NE RMLQEAVDAL+DN ++ +T RPLKS++D + GK+GR Sbjct: 361 LKRWKAAHAPVIIIQNEMRMLQEAVDALIDNQKKSTNQVTTKEGRPLKSISDALTGKKGR 420 Query: 338 FRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAA 397 FRQNLLGKRVDYSGRSVI VGP L++HQ GLP+KMA LF+P+I L +IK A Sbjct: 421 FRQNLLGKRVDYSGRSVIVVGPKLKMHQAGLPRKMAAVLFEPWIIRNLIQEKKVGSIKMA 480 Query: 398 KKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAY 457 +KM+E E ++W + +VI+ P++LNRAPTLHRL IQAFEPVL+ KAIQLHPLV A + Sbjct: 481 RKMIEEENPIIWPHVAKVIQNKPIILNRAPTLHRLSIQAFEPVLVRAKAIQLHPLVTAGF 540 Query: 458 NADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDC 517 NADFDGDQMAVH+P++ EA E + LM + NIL P +GEPI+ PSQD+VLGLYY++++ Sbjct: 541 NADFDGDQMAVHIPISPEAIRETQELMFADKNILGPKDGEPIVNPSQDMVLGLYYLSQEK 600 Query: 518 VNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRA 577 AKGEG + + + Y LHARV + +E+ +TVG+ Sbjct: 601 AGAKGEGSFFSTYEAMLKAYEFRSVELHARV---VLPFEQVKPFIAKTMRGHLISTVGKF 657 Query: 578 ILWMIVPKGLPYSIVNQA 595 IL I P P+ + Sbjct: 658 ILNNIFPANFPFIFDDNV 675 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 155/611 (25%), Positives = 257/611 (42%), Gaps = 52/611 (8%) Query: 529 GPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLP 588 G + ++ +Y+K + + L + T+ + Sbjct: 734 DIATVIDQLDFGNYQNCVLLYEKLRDYKKQK-LPVPHLSKLSEFTIFEYSQLYKQLQQNG 792 Query: 589 YSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPE 648 + L +++L + D+I GF Y+ SG S+ I D+ + Sbjct: 793 PVESYRVLEDHEKAELLEKIWFKYNNMVCS-ILDKIKDLGFHYSTLSGTSIAISDIKMAP 851 Query: 649 KKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVIN 708 KKHE I E E + ++ + GL+T ERY I W + + + + +++ + Sbjct: 852 KKHEFIKEGENYINKLNTFYAKGLITDDERYVLAIAKWTQIKNDIQEDLNQSIKDDN--- 908 Query: 709 RDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDG-------------SII 755 NS+ MM SGARG+ + QLAGMRGLMA SI+ Sbjct: 909 ----------QNSLVMMMKSGARGNISNFVQLAGMRGLMANNVKALKVDAENERVVRSIV 958 Query: 756 ETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCG 815 E P+ ++F EGL +++ STHGARKGL DTAL TA SGYLTRRLVDVAQ++VV +DC Sbjct: 959 EVPVKSSFLEGLTSFEFYSSTHGARKGLTDTALNTAKSGYLTRRLVDVAQNIVVVAEDCF 1018 Query: 816 THEGIMMTPVIE--GGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLE 873 + G ++ +I+ + PL +R+ GR +DV L T++ Q + Sbjct: 1019 SDFGFVVKDIIDTKTNTIIVPLLERIEGRFLNKDVYDSRGIK-LASAGTMVDLQTAKKIV 1077 Query: 874 ENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMR 933 + V++RS++SC VC CYG+DLA +++ GEA+G+IAAQSIGEPGTQLTMR Sbjct: 1078 AAGIKKVEIRSILSCHIKNSVCKKCYGKDLATNRLVSIGEAVGIIAAQSIGEPGTQLTMR 1137 Query: 934 TFHIGGAAS-RAAAESSIQVKNKGS---------IKLSNVKSVVNSSGKLVITSRNTELK 983 TFH GG A+ ++ K+S ++ L + + Sbjct: 1138 TFHTGGVANVEDITGGFTRLIELIDSHEHPWGKPAKISPYYGIITKISDLAEKNAANKGF 1197 Query: 984 LI------DEFGRTKESYKVPYGAVLAKGDGEQVAGGETVAN--WDPHTMPVITEVSGFV 1035 LI + + + ++ L G++V G+ + + +++ Sbjct: 1198 LITIEYKTSKNEKAEHIIRIEQSQKLRVKVGDKVIPGQKLVEGPIILKELLAVSDARTLQ 1257 Query: 1036 RFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDM 1095 + + Q ++ +++ + + + G+ V I Sbjct: 1258 NYLLKEIQRIYRMQGISISDKYIEIIIRQMLSKVQIIENGDSNFFI---GSIVDISDYQE 1314 Query: 1096 PAQYFLPGKAI 1106 + Sbjct: 1315 VNGQLISQNKN 1325 Score = 222 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 96/371 (25%), Positives = 170/371 (45%), Gaps = 16/371 (4%) Query: 1010 QVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTA 1069 V + +P++ + G D+ D + I + T + Sbjct: 1023 FVVKDIIDTKTNTIIVPLLERIEGRFLNKDVYDSRGI-KLASAGTMVDLQTAKKIVAAGI 1081 Query: 1070 GGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQI-SSGDTLARIPQES 1128 ++R L G D+ + V + I G L + Sbjct: 1082 KKVEIRSILSCHIKNSVCKKCYGKDLATNRLVSIGEAVGIIAAQSIGEPGTQLTMRTFHT 1141 Query: 1129 GGT---KDITGGLPRVADLFEARRPK--EPAILAEISGIVSFG----KETKGKRRLVITP 1179 GG +DITGG R+ +L ++ +PA ++ GI++ ++ + +IT Sbjct: 1142 GGVANVEDITGGFTRLIELIDSHEHPWGKPAKISPYYGIITKISDLAEKNAANKGFLITI 1201 Query: 1180 VDGSDPYEE-----MIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIV 1234 + E+ I + ++L V G++V G + +GP ++L + + Y++ Sbjct: 1202 EYKTSKNEKAEHIIRIEQSQKLRVKVGDKVIPGQKLVEGPIILKELLAVSDARTLQNYLL 1261 Query: 1235 NEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEA 1294 E+Q +YR+QG+ I+DK+IE+I+RQML K I+ G S+F G V+ S + N +L + Sbjct: 1262 KEIQRIYRMQGISISDKYIEIIIRQMLSKVQIIENGDSNFFIGSIVDISDYQEVNGQLIS 1321 Query: 1295 NGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVG 1354 K A + + G + L + SF++AAS+QET+++L + ++ + D+L GLKEN+IVG Sbjct: 1322 QNKNPAFGNVIVKGAKQIPLLSNSFLAAASYQETSKILVHSVISSQIDKLEGLKENIIVG 1381 Query: 1355 RLIPAGTGYAY 1365 IPAGT Y Sbjct: 1382 HKIPAGTNSNY 1392 >UniRef50_A9BKN5 DNA-directed RNA polymerase n=1 Tax=Cryptophyta RepID=A9BKN5_9CRYP Length = 1496 Score = 482 bits (1239), Expect = e-134, Method: Composition-based stats. Identities = 200/1360 (14%), Positives = 430/1360 (31%), Gaps = 231/1360 (16%) Query: 139 LYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQEC 198 + + Y IE + ++++ ++ + L+ E E + D E+E Sbjct: 238 IILKCYFEIEKKIRLFKKEKKISRKNALNFCE------------EKFFEIFSKEDYEKEI 285 Query: 199 EQLREELNETNSETKRKKLTKRIKLLEAF---VQSGNKPEWMILTVLPVLPPDLRPLVPL 255 ++ + + N + K + I Q N E ++ L V P RP+ Sbjct: 286 KEFQIKKNIDDLWRYEKDFCELIWGSLGNSKRFQKENNSEIFFISTLLVPPTRFRPVYIS 345 Query: 256 DGG----RFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGR 311 G + T+ N + +++ N +L L+ + ++ + ++ Sbjct: 346 KMGKKKTQTKTNPQNFYFLKILKINQQL--LMTIGFKKKKKEEWSKIFFQYEKTIISMFD 403 Query: 312 RGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKK 371 + + ++ K G FR ++GKRV +S R++IT P+L + G+PK Sbjct: 404 NSIYPSEKQSILPSGIKQQLEKKFGIFRMYIMGKRVCHSARTIITPDPFLLSFEVGIPKN 463 Query: 372 MALELFKPFIYGKLELRGLATTIKA-------AKKMVER--------------------- 403 A +L + KK + + Sbjct: 464 FAFKLTSFPPVNFFNFPKKKQKLDKRWIESLFGKKFLIKPSEKFPNFFKLFKICQKYQEC 523 Query: 404 ---EEAVVWDILDE---VIREHPVLLNRAPTLHRLGIQAFEPVLIE-GKAIQLHPLVCAA 456 + + I + + VLLNR P+LHR + + +I K I++H C + Sbjct: 524 FFQKNPKKYGISRSETMISEKDFVLLNRQPSLHRASLMSHSIKIIPRNKCIKIHYSNCNS 583 Query: 457 YNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRD 516 YNADFDGD+M +H A+ E+ L + ++ P + QD ++ ++T+ Sbjct: 584 YNADFDGDEMNMHFSQNDLARSESLVLSSAFHHSKIPTQKTIMRSLIQDSIIASVFLTKK 643 Query: 517 CVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEY-------------EKDANGEL 563 + + + +K +I +K+ L Sbjct: 644 DTFFSQNNLFQILGFLEKPKKSFENLFFPSILKPKILWTGKQLIFILSTLFFKKNWLISL 703 Query: 564 VAKTSLKDTTVGRAILW-MIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFAD 622 +++ L G +I L I++ + K +L+ I G + +F Sbjct: 704 ESRSKLTKLFYGLDETKILIRKGELLRGILDASQIGKNKHGLLHAFNEIYGNYVSDLFLS 763 Query: 623 QIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGE-RYNK 681 + G SVGI+++++ +K + + + + + ++ N Sbjct: 764 CFGKISIFFQRYHGFSVGIEELILKKKIDYNRLKTFRKEKLLFKIYLKKTLSKNGLFLNL 823 Query: 682 VIDIWAAANDRVS-------------------KAMMDNLQTETVINRDGQ-EEKQVSFNS 721 N + + ++ + + + N +K N Sbjct: 824 YDQKKNRLNLQFKILAFFCTLNPLFESFIRSLRIILGVISSNILENLIIGGLQKAPQING 883 Query: 722 IYMMADSGARGSAAQIRQLAGMRGLMAK--------------PDGSIIE------TPITA 761 M +SGA+G++ I Q+ G P + I Sbjct: 884 FSKMTNSGAKGTSLNIFQICSSLGQTELEGEFFHFGPGGKNLPTFPPFDLSARANGFIFQ 943 Query: 762 NFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIM 821 F G+ +YF R+GL DT++KT+ SGY+ R LV + L V+ D Sbjct: 944 RFLTGIPQPEYFFHCMAGREGLLDTSIKTSQSGYVQRSLVKHLESLKVSYDKTVRFSNGS 1003 Query: 822 MTPVIEG-------GDVKEPLRDRVLGRVTAEDVLKP--------------------GTA 854 ++ +I G E + P T Sbjct: 1004 ISQLIYSKNGTYSCGFDFEYFLPWFFQNFQKKRDFNPKNFQFCISSKSKKIKRRKKSPTK 1063 Query: 855 DILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEA 914 N L+ + + V + V D F + + L +++ G+ Sbjct: 1064 KFFTINNRFLNLKNLFEFRKIVDRFVLSKRVSFFDKMFFSEEKKFLK-LFFSNLVEPGDP 1122 Query: 915 IGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLV 974 +G+IA+QSIGEP TQ+T+ TFH G +++ I L+ + N + + Sbjct: 1123 VGIIASQSIGEPCTQMTLNTFHFAGKLVSKNNLGIPRLRE---ILLTASQFPKNPTMSVY 1179 Query: 975 ITSRNTELKLIDEFGRTKESY-----KVPYGAVLAKGDGEQVAGGETVANWDPHTMPVIT 1029 + R + + + + V + + +A+ + + Sbjct: 1180 FKKNLSSSIYTFMEKRLRPIFFYDLIETIHSFVEKIKNNNFINFRIRLASKNFFKHQLGL 1239 Query: 1030 EVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVL 1089 ++ ++ M + + E + + + + + Sbjct: 1240 QLPFLLKKIKMYFKKIYLKFFKEKFISLNRRKTEIFFFRKPETLYDLWKENIFEKSKTAY 1299 Query: 1090 IPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARR 1149 + + + L I + ++ + + + +P + + F + Sbjct: 1300 LKVKKIQIKKKLFEYKIKKKKEEIFELFKEKMIGFNY-------CLRDIPMIKNGFIDYK 1352 Query: 1150 PKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDV 1209 K + G+ F G+ V+ + Sbjct: 1353 KK----IIHTDGVNFFFFW------------------------------KNGDLVDLKKI 1378 Query: 1210 ISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNA 1269 ++ + ++ G+ A +V E+ ++++Q + IN H+++I + R Sbjct: 1379 FTN---DIYALMNRYGIEAARETLVRELNTIFQIQSILINYHHLDLISDYITR------- 1428 Query: 1270 GSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETT 1329 + ++ + ES + +++ Sbjct: 1429 ---------------------------------LGNFRPFSRKGICEESPLQKITYETAL 1455 Query: 1330 RVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDR 1369 L ++ + D L ++ +G++ GTG R Sbjct: 1456 EFLINFSLNKQIDFLDSASGSISLGKICKMGTGTFDIISR 1495 Score = 65.3 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 16/113 (14%), Positives = 30/113 (26%), Gaps = 19/113 (16%) Query: 19 AIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRL 78 AI + S I S E+ P + + GL R+ + Sbjct: 19 AISFSFYSKKEIHHLSLVEIICPIFFDKK-GFSILGGLCDLRMG---------------V 62 Query: 79 KHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMP 131 + +C C GH++L P + + + + Sbjct: 63 TSKKDVCVSCRGNYLTCP---GHFGHVDLIIPIKNPMLKNLFVNILKAKCNYC 112 >UniRef50_O17628 DNA-directed RNA polymerase n=3 Tax=Caenorhabditis RepID=O17628_CAEEL Length = 1737 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 165/1034 (15%), Positives = 317/1034 (30%), Gaps = 155/1034 (14%) Query: 205 LNETNSETKRKKLTKRIKLLEAFVQSG-----------NKPEWMILTVLPVLPPDLRPLV 253 + L K L + + + L + V P RP+ Sbjct: 310 WRGAEVREHFRMLFKNDGKLLLKLFPMLVDELNGEDMICPLDGLFLERILVPPKKFRPIR 369 Query: 254 PLDGGRFATSDLNDLYRRVIN---------------RNNRLKRLL----DLAAPDIIVRN 294 G + R+V+ + +LK L+ + + + Sbjct: 370 MFKGAQ-YEDPQTLNLRKVLEATETISAISLIMKGDTSAQLKELIANRVRGKTINAQMHD 428 Query: 295 EKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSV 354 LQ +A+ D ++ + + +++ KQG FR +++GKRV+++ RSV Sbjct: 429 AYLQLQLRANAIFDQDLNKG-----DRDSIAGIKQILEKKQGLFRMHMMGKRVNFACRSV 483 Query: 355 ITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVW----- 409 IT PYL + + G+P A +L + + ++ V Sbjct: 484 ITPDPYLDIDEIGIPDIFAKKLTFTEPVNAFNVNEMKGLLRQGPHQHPGANFFVEPSGKK 543 Query: 410 --------------------------------DILDEVIREHPVLLNRAPTLHRLGIQAF 437 +L + +++NR P+LH+ I Sbjct: 544 TMLGDKPEEKKRRMQMAKTLNAATTENLRQTPKVLRHMKNGDMIMMNRQPSLHKPSILGH 603 Query: 438 EPVLIEG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANG 496 ++ G +A++++ C AYNADFDGD+M H+ + AQ E R + +N L P + Sbjct: 604 RARVLTGQRALRMNYAPCKAYNADFDGDEMNGHLVQSHIAQTEVREIANVGSNFLVPKDA 663 Query: 497 EPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVLTGPKEA---------------ERLYRSG 540 P++ QD V+ ++ RD K + M L A + +G Sbjct: 664 TPLLGLIQDHVVSGVLLSVRDRFLNKEDFMHLVLASFAQYSKRIEIPPPTILYPKRLWTG 723 Query: 541 LASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAIL---------WMIVPKGLPYSI 591 + VK I + + N + AKT L V + L + Sbjct: 724 KQVITTIVKNCIPDGKPLINLDGKAKTPLSCWIVPGFDAPQFDMSESHVVFRQGELLVGV 783 Query: 592 VNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKH 651 +++A + + + + G + V Y G ++G+ D+++ + Sbjct: 784 LDKAHFGATQFGLAHCAFELYGHRCGVQLLSCFSRLFTTYLQFHGFTLGVADILVVKDAD 843 Query: 652 EIISEAEAEVAEIQEQFQS------GLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTE- 704 EA E I Q T E + + + + M + + Sbjct: 844 GKRKEAVMESRTIGNQVVKTAFGLPDTATPAEIKRTLAATYCNPRGQGTDVKMLDFGMKQ 903 Query: 705 ---------TVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM-------- 747 T + N++ +M SGA+GSA Q++G G + Sbjct: 904 GIAKYNDAITKSCVPTGLLRLFPQNALQLMIQSGAKGSAVNAIQISGCLGQIELEGKRMA 963 Query: 748 ------AKPDGSIIE------TPITANFREGLNVLQYFISTHGARKGLADTALKTANSGY 795 P + I F G+N + F T R+GL DTA+KT+ SGY Sbjct: 964 VTIAGRTLPSFRCFDPSPRAGGYIDQRFLTGMNPQELFFHTMAGREGLIDTAVKTSRSGY 1023 Query: 796 LTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTAD 855 L R ++ + + V D + G D + + L + T + A Sbjct: 1024 LQRCIIKHLEGIRVHYDSTVRDHDGSVIQFRYGEDGMDTTKATFLNKKTMPFLEDNLEAV 1083 Query: 856 ILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAI 915 L + + + + E V+ + G+ + A Sbjct: 1084 TLASKPEGVTDADFGIKETEKRYKKIVKWKKKAE--------KSGKSGTKKSY---FSAF 1132 Query: 916 GVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVK-------NKGSIKLSNVKSVVN 968 +A+ IG ++ F + A + + KL + + Sbjct: 1133 TNFSAEHIGMEKKRILAMWFELSLEEREQYARGIPKKCPEAVDERFNPTCKLGALPEKML 1192 Query: 969 SSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQV--AGGETVANWDPHTMP 1026 + T R ++ + + G GE V +++ Sbjct: 1193 DEIEGFCTRRVKKVDDEEPPKEVLKRTLYWKGMRSLADPGENVGLLAAQSIGEPSTQMTL 1252 Query: 1027 VITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGN 1086 +G + + + + A +D ++K + Sbjct: 1253 NTFHFAGRGEMNVTLGIPRLREILMTASKSIATPSASIAVIAGTSRDRIDSIKRELDRVY 1312 Query: 1087 DVLIPGTDMPAQYF 1100 + + Sbjct: 1313 LKQLLKNFSLEEKI 1326 Score = 99.2 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 47/319 (14%), Positives = 100/319 (31%), Gaps = 63/319 (19%) Query: 1066 ERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIP 1125 + + L D +L+ + + + L D + + +P Sbjct: 1468 MDSDSEDVKKEGLDGEDQTTEPLLVNSSRIQSVQRLSENISSYTYDVKSNKWCEVVFELP 1527 Query: 1126 QESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGK--ETKGKRRLVITPVDGS 1183 + D++ + + +LF I+ + GI + E K + + I G Sbjct: 1528 LRNKTKMDVSSIVEKEVELF---------IVHQTPGIERCVETTEQKNGKEMTILQTQGV 1578 Query: 1184 DPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRL 1243 + + ++ +V + V + IL GV A ++ I E+ +V+ + Sbjct: 1579 N----LAAFFKHADVLDVNSV--------YSNDLNLILENYGVEACSKAITTEMNNVFAV 1626 Query: 1244 QGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYS 1303 G++ V + + + G++ Sbjct: 1627 YGIE--------------------------------VSKRHLSLTADYMTFTGQIQPFNR 1654 Query: 1304 RDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGY 1363 A ++ S + +F+ T L EA + G+ D + +++G L GTG Sbjct: 1655 G-------AMSSSSSPLQKMTFETTMAFLREALLHGEEDNVNSPSARLVMGALPRGGTGS 1707 Query: 1364 A-YHQDRMRRRAAGEAPAA 1381 D + E AA Sbjct: 1708 FDLLLDTKMQSEREEHEAA 1726 Score = 85.7 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 49/168 (29%), Gaps = 23/168 (13%) Query: 9 KAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDY 68 + +F K+ P I S ++ + +T + P GL+ + GP + Sbjct: 7 NGEEPYMQFSNFKLRSYFPHEIDKLSVLKITQTKTFD-EVGHPIAGGLYDPIL-GPDNTF 64 Query: 69 ECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLL 128 + +C C MGHI+LA P + + LL Sbjct: 65 D--------------MCMTCNQYERHCP---GHMGHIQLAVPVFNPLLFQFTY----NLL 103 Query: 129 DMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEF 176 R+ V + L ++ E D D+ Sbjct: 104 KGSCVHCHRLTCKGDGVNARMLLAQLRCFELGVEHVAFDLESILRDKI 151 >UniRef50_C7BEK7 DNA-directed RNA polymerase n=2 Tax=Chlorophyta RepID=C7BEK7_PEDMN Length = 712 Score = 478 bits (1230), Expect = e-133, Method: Composition-based stats. Identities = 254/639 (39%), Positives = 348/639 (54%), Gaps = 100/639 (15%) Query: 17 FDAIKIALASPDMIRSWS---------FGEVKKPETINYRTFKPERDGLFCARIFGPVKD 67 +++++++ASP+ IR W+ G+V +T+NY+T KPE GLFC IFGP+ D Sbjct: 13 IESLRLSIASPERIRRWAERTLPSGKIVGQVLNSQTLNYKTLKPELGGLFCETIFGPIYD 72 Query: 68 YECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIEL-------------ASPTAH- 113 + C CGK R C CGVE T +++RR R+G+I L S AH Sbjct: 73 FRCACGKAPMKDFR--YCPDCGVEFTSSRIRRYRLGYISLASPVAHVWYFKGSPSYVAHL 130 Query: 114 IWFLKSLPSRIGLLLD------------------------------MPLRDIERVLYFES 143 I K S + P +++ Y Sbjct: 131 IGLKKRTVSALLYCTQTITGEFEARFNLFNSDQLNSNSELVAKTNFFPPPAFKKLTYLFP 190 Query: 144 YVVIEGGMTNLERQQI---------------LTEEQYLDALEEFGDEFDAK--MGAEAIQ 186 Y E+ + + Y + LE D G+E ++ Sbjct: 191 YYCFRNTYAWTEQTDLQQFLSYMSGTISNEDVLIPAYQNLLEINKDSLREMSWTGSEPVK 250 Query: 187 ALLKSMDLEQECEQLREELNETNSE-----------------------TKRKKLTKRIKL 223 L +DL + LR L E T R ++ +RIK+ Sbjct: 251 RFLTQLDLNRLELVLRRYLPILQEEIDVLEPSYASLSIEQLLHLRYLLTARARILRRIKI 310 Query: 224 LEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLL 283 + F +S KPEWM+L++LPVLPPDLRP++ + + A SDLN LY++V+ RN R+ R Sbjct: 311 VRNFRKSKAKPEWMLLSILPVLPPDLRPIIEMGKNQVAVSDLNKLYQKVLFRNQRVIRHK 370 Query: 284 DLAAP---DIIVRNEKRMLQEAVDALLDNGRRG-RAITGSNKRPLKSLADMIKGKQGRFR 339 + + +R +R+LQE+VDALL+NGR G IT N RPLKSL+DM+KGK+GRFR Sbjct: 371 RIGSSLNKSNEMRYAQRLLQESVDALLENGRGGSEPITAPNGRPLKSLSDMLKGKKGRFR 430 Query: 340 QNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKK 399 QNLLGKRVDYSGRSVI VGP L+LH+CGLP++MALELF+PF+ +L + T+ AKK Sbjct: 431 QNLLGKRVDYSGRSVIVVGPSLKLHECGLPREMALELFQPFLIRRLIRTKIVRTVLGAKK 490 Query: 400 MVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNA 459 ++ ++ ++W IL VI HP+LLNRAPTLHRLGIQAF+P LI G+AI LHPLVCAA+NA Sbjct: 491 LIAFQDPIIWQILQNVIENHPILLNRAPTLHRLGIQAFQPKLILGRAILLHPLVCAAFNA 550 Query: 460 DFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDC-V 518 DFDGDQMAVHVPL+L+A+ EA LM S NN+LSPA G+PI+ PSQD+VLG YY+T + Sbjct: 551 DFDGDQMAVHVPLSLQARAEAFKLMWSRNNLLSPATGQPILGPSQDMVLGCYYLTTENQK 610 Query: 519 NAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEK 557 N + E Y +H V V+ ++ + Sbjct: 611 NLSSNASLFYSFDEVLDAYYQKTLPIHTYVWVKCSDSIE 649 >UniRef50_A2GJD3 DNA-directed RNA polymerase (Fragment) n=3 Tax=Trichomonas vaginalis RepID=A2GJD3_TRIVA Length = 1004 Score = 476 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 153/871 (17%), Positives = 286/871 (32%), Gaps = 127/871 (14%) Query: 343 LGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVE 402 +GKRV++S RSVI PY+ + G+P A L P L+ I Sbjct: 1 MGKRVNFSARSVIAPDPYVATDEVGVPAVFAKTLSYPERVRDYNKERLSKAILNGADNYP 60 Query: 403 REEAVV---------------------------------WDILDEVIREHPVLLNRAPTL 429 ++ W + I VL+NR PTL Sbjct: 61 GANLIIDPYGQTFQLKGMKESLRQSYASKIFAESDGDFPWTVGRHAINGDYVLINRQPTL 120 Query: 430 HRLGIQAFEPVLIE-GKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTN 488 HR+ I A ++ + I++H CA++NADFDGD++ +H+P A+ EA L +S+ Sbjct: 121 HRVSILAMRVKVLPKQRTIRMHYSNCASFNADFDGDEINLHLPQNELARAEANILSLSSR 180 Query: 489 NILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVLTGPKEAERLYRSGLASLHAR 547 + ++P G PI QD V +T ++ K + L + A Sbjct: 181 HYITPTAGNPIRGLIQDHVDAGALLTMKNNFLTKTQYQELVFTAFGGEINHKLEMLPPAI 240 Query: 548 VKVRITEYEKDANGELVAK------------------TSLKDTTVGRAILWMIVPKGLPY 589 +K K ++ +S+ V L Sbjct: 241 IKPTQLWTGKQVISTIIINLTKNLSDQMMDLTSNSKISSILCYGCKEETTVRFVDGHLCT 300 Query: 590 SIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEK 649 I+++A + M++T Y + G F + + G S GI DM++ K Sbjct: 301 GIIDKAQFGASKFGMVHTIYELYGSDMASRFLTMLTRLFTYFMQCHGFSCGIADMIVNHK 360 Query: 650 KHEIISEAEAEVAEIQEQFQSGLVTAG-----ERYNKVIDIWAAANDRVSKAMMDNLQTE 704 + + + E ++ + + V + N +W D+ K D++ Sbjct: 361 GEGMREKMKEETDKVAIKTANDFVEEFGTKETQYMNLKDRLWDLIKDKDMKERYDHMIMG 420 Query: 705 T---------VINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAK------ 749 K N + MM SGA+GS Q++ + G + Sbjct: 421 NLNKAASDTLNAIFPANITKPFPQNHLTMMTSSGAKGSVVNATQISCLLGQQSLEGKRVP 480 Query: 750 --------PDGSIIE------TPITANFREGLNVLQYFISTHGARKGLADTALKTANSGY 795 P ++ +++ F GL +Y+ G R+GL DTA+KTAN+GY Sbjct: 481 LMRSGKALPSFEFMDMSPQSGGFVSSRFLTGLTPEEYYFHAMGGREGLTDTAVKTANTGY 540 Query: 796 LTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGR------------- 842 L R ++ + L + D + + G D +P++++ + + Sbjct: 541 LQRCIIKNIEGLRASYDGTVRDADDTIVQFLYGEDGIDPMQNKYITKFDFMLKNIDSYSQ 600 Query: 843 ---VTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCY 899 + V ++E + V S + C Sbjct: 601 KLNIEKVGEKANCDLAQKVIDGEKVNENSLVQATYHPHRYVGSISQSFENALNKYCDDLK 660 Query: 900 GRDLAR---------------GHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRA 944 + I GE +GVIAA++IGEP TQ+T+ TFH+ G Sbjct: 661 KKGTDEDTIKNLRAVAVFNYFSSQIQPGEVVGVIAAEAIGEPATQMTLNTFHLAGYGGTN 720 Query: 945 AAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTEL------KLIDEFGRTKESYKVP 998 +++ + + + + + + ++ + + + + Sbjct: 721 VTLGIPRLREILIVATRTPATPMMFLSLSMDDEKKCQEFLTEFKRIPLKDVVEQFTVRES 780 Query: 999 YGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSS 1058 A+ ++ + P P + + I ++ + + Sbjct: 781 MNAISEVRLERKIEVTIKLI---PDNFPQGKNFNFAIDSIRSHFATQIKKKLNSILRQKG 837 Query: 1059 LVVLDSAERTAGGKDLRPALKIVDAQGNDVL 1089 + + A + + + G D Sbjct: 838 DHIREIASDETATAEQVRDMTKEEEMGADRS 868 >UniRef50_C5LXY1 DNA-directed RNA polymerase n=6 Tax=Perkinsus marinus ATCC 50983 RepID=C5LXY1_9ALVE Length = 1775 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 161/874 (18%), Positives = 278/874 (31%), Gaps = 187/874 (21%) Query: 178 AKMGAEAIQALLKSMDLEQECEQLREE-----LNETNSETKRKKLTKRIKLLEAFVQS-- 230 +A L + + +LR + + T KL + + F+ Sbjct: 252 VCPNCKAKSELFRVDGYNKIFRKLRGKAAEKFVTPTYVRNLLHKLWCEEREILEFLFPAS 311 Query: 231 -GNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDL---NDLYRRVINRNNRLKRLLD-- 284 G + + + V P LRPL L + ++ N LK+LL+ Sbjct: 312 VGRGEDIFFMQNIVVPPNKLRPLRFGGDSDDNQGFLPASTVCLKNILESNLLLKQLLETD 371 Query: 285 --------------LAAPDIIVRNEKRM---------------------LQEAVDALLDN 309 A P++I ++ M LQ V+ LD+ Sbjct: 372 QEAVENPNDREKAGDALPNLISDEDETMKPVDNTPQRGPMTTLGTALIDLQNNVNNYLDS 431 Query: 310 GRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLP 369 + G+A NK + +++ KQG FR ++GKRV+Y+ RSVI+ L +Q GLP Sbjct: 432 AKSGKA---QNKVVAFGVRQLLERKQGLFRMKMMGKRVNYAARSVISPDVSLETNQIGLP 488 Query: 370 KKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWD------------------- 410 AL+L P + L ++ AVV+ Sbjct: 489 MFAALQLTVPEPVNSFNVDYLRALVENGPDKYPGAAAVVFPDGKLVSLKGRQPHQRKAIA 548 Query: 411 ---------------ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLI-EGKAIQLHPLVC 454 +L V P+L+NR PTLH+ GI A ++ + K I++H C Sbjct: 549 RSLYQSTNPDKKPRVVLRHVRDGDPLLVNRQPTLHKPGIMALFVKVLSKEKTIRMHYSNC 608 Query: 455 AAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT 514 +NADFDGD++ +H P A+ EA + + + L P +G+P+ QD V+ ++T Sbjct: 609 NTFNADFDGDEINLHCPQDSNARAEAIYIASADHQYLGPTSGKPLRGLIQDHVVSGVFLT 668 Query: 515 RDCVNAKGEGMVLTGPKEAERLYRSG----------------------------LASLHA 546 + + + Sbjct: 669 ARDHFMRKTEVQNLIYTAMRAAIEGDTSGIGSVKSRGQVTKLTTPAGVPKDFRIVMEPPV 728 Query: 547 RVKVRITEYEKD-ANGELVAKTSLKDTTVGRAILWM------------------------ 581 VK + K L + + +AI+ Sbjct: 729 IVKPQTLWTGKQVITIFLKSLIKFATHSTDKAIVNGFNHHAKAKTPGDLWGGVSDGNKEE 788 Query: 582 ----IVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGA 637 I L ++++A + + + Y + G K + + Y G Sbjct: 789 QMVTIRDTELIEGVLDKASFGATANGLTHLFYELCGPKAAGLLLTGMGRMLTLYLQYHGF 848 Query: 638 SVGIDDMVIPEKKHE----IISEAEAEVAEIQEQF------QSGLVTAGERYNKVIDIWA 687 + + D++I + E ++ +A + + + V + K I Sbjct: 849 TCAMRDLLITPEGDEARLQMLRKAREDSWNKIRDWVKENSPEEANVKTLHKLQKEIGKLY 908 Query: 688 AANDRVSKAMMDNLQTE------------TVINRDGQEEKQVSFNSIYMMADSGARGSAA 735 AA+ +V M + L+ I + N M +GA+GS Sbjct: 909 AADPKVQHPMFEELEETMLSTNRDYWGKLIDILFPKGQVSPFPDNCFSAMVSTGAKGSKV 968 Query: 736 QIRQLAGMRGLMAKPD--------------------GSIIETPITANFREGLNVLQYFIS 775 + M G G IT F G ++F Sbjct: 969 NHSMIDAMLGQQELEGHRAPRMRNQRFLPSFAQYDIGPRAGGYITDRFLTGYRPQEFFYH 1028 Query: 776 THGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPL 835 R+GL DTA+KTA SGYL R LV + + + D + + G D + Sbjct: 1029 CMAGREGLVDTAVKTARSGYLQRCLVKNLEGITINYDYTVRDTDSSIVEFLYGEDGMDVT 1088 Query: 836 RDRVLGR--VTAEDVLKPGTADILVPRNTLLHEQ 867 + L + V E+ + + + Sbjct: 1089 KVSHLEQFDVLDENSAFMAKSAAVAKEEAKMESN 1122 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 48/301 (15%), Positives = 90/301 (29%), Gaps = 53/301 (17%) Query: 1092 GTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPK 1151 G +Y + + + SG +++ G+ R + EA Sbjct: 1522 GQTTAEEYQVSK--TKNSTEVIFNKSGRLYGPKFVLRSRPLELSQGISRKILILEA---- 1575 Query: 1152 EPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVIS 1211 +A++ + + V+ P G + + L++ G D I Sbjct: 1576 ----VADLCSDLYIQQTPGITSVHVVEPRPGQSDKVTIETEGVNLDIAWGLDGIDHDRIV 1631 Query: 1212 DGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGS 1271 IL GV A IV EV V+ G+ ++ +H+ + Sbjct: 1632 T--NDIGLILDRYGVEAARAAIVQEVLRVFGHYGIGVDPRHLML---------------- 1673 Query: 1272 SDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRV 1331 + + +G + A S +F+ + Sbjct: 1674 ----------------ISDYMTHHGGFRPFSR-------RGMEAHASPWLQMTFETSVNF 1710 Query: 1332 LTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRR--RAAGEAPAAPQVTAEDA 1389 LT+A + D L+ ++IVG+ GTG + M + R + A QV Sbjct: 1711 LTKACNNAQYDTLKSPAGSIIVGKQASVGTGCFDLRMEMPKSVRGLAKDELATQVKKPKK 1770 Query: 1390 S 1390 Sbjct: 1771 E 1771 Score = 97.6 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 73/214 (34%), Gaps = 24/214 (11%) Query: 13 KTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLC 72 ++ SP I+ S E+ + P DGL+ + Sbjct: 11 PGCSIHDVQFMYMSPKEIQDISVKEITEVAAFGNLAGAPLPDGLYDPALGP--------- 61 Query: 73 GKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLL---- 128 H G +C+ CG+ V +GHI+LA+ + + +++L + + + Sbjct: 62 ------LHIGDLCKTCGLGVHDCP---GHLGHIKLATDVYNPFLIRTLYNVLRRMCTSCN 112 Query: 129 DMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQAL 188 +R Y + + +I G+ E ++ E + + A++ +A Sbjct: 113 HFRVRKAVTQRYCDRFKLILAGLEP-ESHDVVMEPCDEKTKSALERDMTSDPNADSREAF 171 Query: 189 LKSMDLEQECEQLREELNE-TNSETKRKKLTKRI 221 ++ + + + + K L K++ Sbjct: 172 VEHASYQDGSSSYVPYIMGHGEEQNRVKALVKQL 205 Score = 75.3 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 56/350 (16%), Positives = 114/350 (32%), Gaps = 33/350 (9%) Query: 791 ANSGYLTRRLVDVA-QDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVL 849 SG T+ LV + + V + G + + D ++ V+ Sbjct: 1134 PQSGRRTKELVKEVRESIRVL----LSDGGNQVDASDKLRDEEKEHIAFVVKDTHTNGGK 1189 Query: 850 KPGTADILVPR--NTLLHEQWCDLLEEN-SVDAVKVRSVVSCDTDFGVCAHCYGRDLARG 906 P +L P + E+ + L E S ++ + + V H Y R Sbjct: 1190 APPMNSMLPPWRFTGAMSEREENALTEYLSHRPEELEKKMPTEEFRDVIMHKYART---- 1245 Query: 907 HIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSV 966 + + GEA+G +AAQ +GEP TQ+T+ TFH+ G + ++ + Sbjct: 1246 -LADPGEAVGTLAAQGMGEPSTQMTLNTFHLAGHGGVNVTLGIPR-----------LREI 1293 Query: 967 VNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMP 1026 V ++ + + + E ++ +E G + + V + + P Sbjct: 1294 VQTASR-HLETPAMEFPVLGGLKVAEEL----KGKMTRVSLKDVVVATHVLESV-TAAQP 1347 Query: 1027 VITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGN 1086 + + +++D I + L+ + LD R +L+ +KI ++ Sbjct: 1348 SGETMRTYELVVELVDPVMIQKAYPSLSQTAIAHFLDHDFRDKLNSNLKKFIKISESTST 1407 Query: 1087 D---VLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKD 1133 + + E Q + R + D Sbjct: 1408 ITSRKAQQEEGAADVFNEIPEDENNAEQKDQGDESQNVTRTLAQRARATD 1457 >UniRef50_Q83066 DNA-directed RNA polymerase n=3 Tax=Lymphocystivirus RepID=Q83066_FLDV Length = 1199 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 206/1061 (19%), Positives = 351/1061 (33%), Gaps = 222/1061 (20%) Query: 16 EFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKY 75 + + +L+S D+I S E+ N K E+ ++ + G Sbjct: 2 DLTSFNFSLSSDDIILKNSVTEI------NKCCLKQEKQSIYDPYLGGIEG--------- 46 Query: 76 KRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDI 135 +C C + GHI LA P F K +L + Sbjct: 47 --------LCPTC---TKDSYQCPGHFGHINLAIPIL--IFYKEAV----NILKKHCLNC 89 Query: 136 ERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLE 195 + + E ++ +I+ + L Sbjct: 90 G----------LNTLSSPCENCSVVH---------------------PSIKLTENEIGLS 118 Query: 196 QECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPL 255 + + +++ E K K + ++I + P +ILT PVLPP RP PL Sbjct: 119 KIQLKHKDKKIELLEPDKIKLIFEKITA-----PAHIHPTNLILTKFPVLPPCCRPQTPL 173 Query: 256 DGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRA 315 DL+ +++ NN+LK L+ + +DN + G+A Sbjct: 174 -----VDDDLSVFLSQIVKLNNKLK--------LNYCPQVADQLRLKILCYVDNSK-GKA 219 Query: 316 ITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALE 375 +N + + + + + K G RQN++GKR + + RSV+ L+L + +P ++A Sbjct: 220 THNTNHKAMTGIKERLSKKTGILRQNMMGKRRNQTARSVVGPDTTLKLDEVAIPYEIANN 279 Query: 376 LFKPFIYGKLELR-----GLATTIK-AAKK---------------------------MVE 402 L P + +A IK K MV Sbjct: 280 LTIPIKITPFNYKLISSYKIAAVIKANGAKYCIPTDRQKYVLIHGDSIACSKNGQEFMVT 339 Query: 403 REEAVVWD---------------------ILDEVIREHPVLLNRAPTLHRLGIQAFEPVL 441 AVV D I + PV+LNR PTLHR + + V Sbjct: 340 DCNAVVPDNFEPIKKLVPFPLPTIEIGDTIERFLEDGDPVILNRQPTLHRNSMLGMKIVK 399 Query: 442 IEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIV 501 GK I+++ V +N DFDGD+ +++P + EA+ E LM I+S + I Sbjct: 400 KLGKTIRVNLAVTHGFNMDFDGDEGNLYLPQSEEARFEVAELMNPKKLIISNKYPQAEIF 459 Query: 502 PSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANG 561 P QD VLG Y MT+ + E + + K Sbjct: 460 PVQDAVLGAYLMTKYPNMTQEEYFDCLTALDL------------------FYKPVKQYTT 501 Query: 562 ELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFA 621 + K L + IV + + K + ++ + V F Sbjct: 502 INLIKLLLPNDFCLDLTSLTIVNGQIITGFL----TGKTLKIIVQYLALEYPCEQVVYFI 557 Query: 622 DQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNK 681 DQI + SVGI D V E + E I + + + A + YN+ Sbjct: 558 DQIQSLTNKWLLNHPFSVGIKDCV----------ELKCETHTIIKNY---YIKANKAYNE 604 Query: 682 VIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLA 741 + + + + T+ + K N+ +MA++G++G + Q+ Sbjct: 605 APFFYKETAVGIVLNSVKDAATKII--------KTDENNAFVVMANAGSKGDCFNLVQIG 656 Query: 742 GMRGLMAKPDGSI--------------------------IETPITANFREGLNVLQYFIS 775 G+ G +++ F GLN + F Sbjct: 657 GLLGQQYVNGQRPGYETDDDRKTLACYPRIVTDLIDKYESRGFVSSCFINGLNPRECFFH 716 Query: 776 THGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPL 835 R+G+ +T+ T +GY RR+V + +++++ D + I G P Sbjct: 717 AKSGREGMINTSQTTGVTGYAERRMVKLTENIIIAYDGSVRDAKNNIVQFIYGNHGMNPA 776 Query: 836 RDRVLG------RVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCD 889 + G R+ + L + N +L + L E + V + Sbjct: 777 KCFKTGIPLCFKRLAYKLNLNYTGPLTIPNYNNILELIFFKQLPEPIQEYVLQFHRNNIK 836 Query: 890 T-----DFGVCAHCYG--RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAAS 942 C R II+ GEA+G+I AQ+IG TQ T+ TFH G S Sbjct: 837 AGAVLIPKSACQIWTETVRKAYVAAIIDPGEAVGIICAQAIGAKQTQQTLNTFHKAGTLS 896 Query: 943 RAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELK 983 E+ + + K + S TE++ Sbjct: 897 ----EAGHRQFGEILSLTQKPKKRSCYLKLKNVPSNPTEIR 933 Score = 80.7 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 46/215 (21%), Positives = 80/215 (37%), Gaps = 35/215 (16%) Query: 1154 AILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDG 1213 +IL S K K +L I PV G + E V +G + Sbjct: 1005 SILLSWSTHCCIDKIFKDVLKLKIGPVQG--VTGYDLYPIPHTKPIEYAIVTKGSNLQKL 1062 Query: 1214 PEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD 1273 PH I ++V D+Y+ G+ K + R+M++ Sbjct: 1063 LSHPH--------IKTEGAICDDVWDIYKTLGLAAVRKRL----REMIKTCV-------- 1102 Query: 1274 FLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATE--SFISAASFQETTRV 1331 GE++ +++ ++ GK I + ++ T +S A+F+E+ + Sbjct: 1103 ---GEEIYPEHIQLLVDQMTYKGKPMP--------IDRYTMRTHQVGPLSRAAFEESLDI 1151 Query: 1332 LTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYH 1366 L +AV G+ D L G+ VI G+ GTG+ Sbjct: 1152 LVNSAVIGETDTLNGVSACVIAGKKTFIGTGFPKL 1186 >UniRef50_A8XYH3 DNA-directed RNA polymerase n=1 Tax=Caenorhabditis briggsae RepID=A8XYH3_CAEBR Length = 1764 Score = 472 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 170/1132 (15%), Positives = 333/1132 (29%), Gaps = 188/1132 (16%) Query: 205 LNETNSETKRKKLTKRIKLLEAFVQSG-----------NKPEWMILTVLPVLPPDLRPLV 253 + L K L + + + L + V P RP+ Sbjct: 322 WRGAEVREHFRALFKNDGKLLLKLFPMLVDELNGEDMICPLDGLFLERILVPPKKFRPIR 381 Query: 254 PLDGGRFATSDLNDLYRRVINRNNRL-------------------KRLLDLAAPDIIVRN 294 G + R+V+ + K + + + + Sbjct: 382 MFKGAQ-YEDPQTMNLRKVLEATETISAISLIMKGDNSSELIQLVKDRVRGKTINAQMHD 440 Query: 295 EKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSV 354 LQ +A+ D ++ + + +++ KQG FR +++GKRV+++ RSV Sbjct: 441 AYLQLQLRANAIFDQDLNKG-----DRDSIAGIKQILEKKQGLFRMHMMGKRVNFACRSV 495 Query: 355 ITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVW----- 409 IT PYL + + G+P A +L ++ + + V Sbjct: 496 ITPDPYLDIDEIGIPDIFAKKLTFTEPVNAFNIKEMKELLHRGPHQHPGANFFVEPSGKK 555 Query: 410 --------------------------------DILDEVIREHPVLLNRAPTLHRLGIQAF 437 +L + +++NR P+LH+ I Sbjct: 556 TMLGDKPDEVKRRKLMAKTLNAATTTSLRQTPKVLRHMRNGDMIMMNRQPSLHKPSIMGH 615 Query: 438 EPVLIEG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANG 496 ++ G +A++++ C AYNADFDGD+M H+ + AQ E R + +N L P + Sbjct: 616 RARVLTGQRALRMNYAPCKAYNADFDGDEMNGHLVQSHIAQTEVREIANVGSNFLVPKDA 675 Query: 497 EPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVLTGPKEA---------------ERLYRSG 540 P++ QD V+ +T RD K + M L A + +G Sbjct: 676 TPLLGLIQDHVVSGVLLTLRDRFLNKEDFMHLVLASFAQYSKRIEIPPPTILYPKRLWTG 735 Query: 541 LASLHARVKVRITEYEKDANGELVAKTSLKDTT---VGRAIL------WMIVPKGLPYSI 591 + VK I E + N + AKT L + + L + Sbjct: 736 KQVVSTIVKNCIPEGKPLINLDGKAKTPLSCWIVPGFKQPDFDMSESHVVFRKGELLVGV 795 Query: 592 VNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAA---------------RSG 636 +++A + + + + G + V Y G Sbjct: 796 LDKAHFGATQFGLAHCAFELYGHRCGVQLLSCFSRLFTTYLQVCFKNNNQRLHIYFQFHG 855 Query: 637 ASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQS------GLVTAGERYNKVIDIWAAAN 690 ++G+ D+++ ++ +A E I Q T E + + Sbjct: 856 FTLGVADILVVKEADGKRKDAVMESRTIGNQVVKTAFGLPDSATPAEIKRTLAATYCNPR 915 Query: 691 DRVSKAMMDNLQTE----------TVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQL 740 + + M + + T + N++ +M SGA+GSA Q+ Sbjct: 916 GQGTDVKMLDFGMKQGIAKYNDAITKACVPTGLLRLFPQNALQLMIQSGAKGSAVNAIQI 975 Query: 741 AGMRGLM--------------AKPDGSIIE------TPITANFREGLNVLQYFISTHGAR 780 +G G + P + I F G+N + F T R Sbjct: 976 SGCLGQIELEGKRMAVTVAGRTLPSFRCFDPSPRAGGYIDQRFLTGMNPQELFFHTMAGR 1035 Query: 781 KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVL 840 +GL DTA+KT+ SGYL R ++ + + V D + G D + + L Sbjct: 1036 EGLIDTAVKTSRSGYLQRCIIKHLEGIRVHYDSTVRDHDGSVIQFRYGEDGMDTTKVTFL 1095 Query: 841 GRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYG 900 + T + A L + +++ + + K+ G ++ Sbjct: 1096 NKKTMPFLEDNLEAVTLASKPEGVNDNEFG-INDTEKRYRKIMKWKKKAPKTGKKSYF-- 1152 Query: 901 RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQV-KNKGSIK 959 A +A+ G ++ F + A + + + Sbjct: 1153 ------------SAFTNFSAEHAGLDKKRILAMWFELSLEERAAYEKGIPKKCPEAVDER 1200 Query: 960 LSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQV--AGGETV 1017 + + K++ K +E + G GE V +++ Sbjct: 1201 YNPSCKLGALPEKMLDEIEGFCTKSKEEPNDILKRTLFWKGMRSLADPGENVGLLAAQSI 1260 Query: 1018 ANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPA 1077 +G + + + + + + P Sbjct: 1261 GEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMTASKSIA-----TPSASIAVIAGTPR 1315 Query: 1078 LKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGG 1137 +I + + + + + K + + E + G Sbjct: 1316 ERIDTIKRELDRVYLKQLLKNFSMEEKITLTQNQS------TRRYHLRIEILAAEKREQG 1369 Query: 1138 LPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEM 1189 AR K I+ EI K++ + + M Sbjct: 1370 ---------ARHLKRSKIMDEIEKRFILRVSHAIKKKYLDITDYQQMSHRTM 1412 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 44/306 (14%), Positives = 100/306 (32%), Gaps = 54/306 (17%) Query: 1084 QGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPR-VA 1142 D ++ + + A L D + + +P + D++ + R V+ Sbjct: 1504 DKKDPMVNSSRIQAVQRLSDNISSYTYDVKSNKWCEVVFELPLRNKTKMDVSSIVERFVS 1563 Query: 1143 DLFEARRPKEPAILAEISGIVSFGK--ETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE 1200 F + + I+ + GI + E K + +I G + + ++ +V + Sbjct: 1564 ACFSLKIEVDQFIVHQTPGIERCVETTEQKNGKETIILQTQGVN----LAAFFKHADVLD 1619 Query: 1201 GERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM 1260 V + IL GV A + I E+ +V+ + G++++ + Sbjct: 1620 VNSV--------YSNDLNLILENYGVEACAKAITTEMNNVFAVYGIEVSKR--------- 1662 Query: 1261 LRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFI 1320 + + + G++ A ++ S + Sbjct: 1663 -----------------------HLSLTADYMTFTGQIQPFNRG-------AMSSSSSPL 1692 Query: 1321 SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPA 1380 +F+ T L EA + G+ D + +++G L GTG + ++ E Sbjct: 1693 QKMTFETTMAFLREALLQGEEDNVNSPSARIVMGALPRGGTGSFDLILDTKMQSEREEDE 1752 Query: 1381 APQVTA 1386 A + Sbjct: 1753 AARAKK 1758 Score = 80.7 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 47/182 (25%), Gaps = 31/182 (17%) Query: 9 KAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDY 68 + +F K+ P I S +V + +T + P GL+ + Sbjct: 7 NGEEPYMQFSNFKLRNYFPHEIDKLSVLKVIQTKTFD-EVGHPIEGGLYDPVLGP----- 60 Query: 69 ECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSR----- 123 + C C MGHI+LA P + + + Sbjct: 61 ----------DNIRDNCRTCNQYERHCP---GHMGHIQLAVPVFNPLLFQFTYNVSFMKV 107 Query: 124 -------IGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEF 176 I LL R+ V + L ++ E D D+ Sbjct: 108 ISKSYISILQLLKGSCVHCHRLTCKGDGVNARMLLAQLRCFELGVEHVAFDLEAILRDKI 167 Query: 177 DA 178 Sbjct: 168 TN 169 >UniRef50_P23581 DNA-directed RNA polymerase subunit beta'' n=2 Tax=Euglena RepID=RPOC2_EUGGR Length = 830 Score = 470 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 231/844 (27%), Positives = 380/844 (45%), Gaps = 88/844 (10%) Query: 588 PYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIP 647 N+ K I +++ G T D++ GF YA +G S+G+ D+ IP Sbjct: 5 NIVCFNRVFDKNEIRNLISWFLSNYGSIRTKELLDKMKNFGFTYATTTGLSLGLGDLKIP 64 Query: 648 EKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVI 707 K ++ +E + + + ++++G++ ++ DIW N+ + K ++NL+ Sbjct: 65 SSKANLVKSSEKILFKTRNRYKNGMINFINVLDEERDIWNVVNENLKKESINNLRQ---- 120 Query: 708 NRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGL 767 N +Y M SGARGS Q++QL GMRGLM+ G++I PI NF+EGL Sbjct: 121 --------SDFLNPLYSMTLSGARGSITQVKQLIGMRGLMSDSQGNVIPFPIKTNFKEGL 172 Query: 768 NVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIE 827 N+ +YF+S +GARKGL DTALKTAN+GYLTRR++ AQ+L+V DC T + + Sbjct: 173 NITEYFVSCYGARKGLIDTALKTANAGYLTRRMIYTAQNLIVKRSDCFTKYNTCVLLQNQ 232 Query: 828 GGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVS 887 + + L+++++GRV A+ ++ T DILV + + V +R+ + Sbjct: 233 DKEELKFLKEKLIGRVLAKTIVNAKTGDILVSAGQDICNYTFKKIINFP--EVYIRTPFN 290 Query: 888 CDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAE 947 C G+C CYG +LA G ++ GE +G++AAQSIGEPGTQLTMRTFH GG S A+ Sbjct: 291 CVLMEGICQICYGWNLACGKMVELGECVGILAAQSIGEPGTQLTMRTFHTGGVFSAK-AK 349 Query: 948 SSIQVKNKGSIKLSN---VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLA 1004 I G I ++ V N + + + +I E +K +P +L Sbjct: 350 EVITSPLNGKIWYDLNTGLRRVYNKFKEKAFLTLQEKKIVIYENDVSKSIMFLPSSTLLY 409 Query: 1005 KGDGEQVAGGETVANWDPHTM------------------------PVITEVSGFVRFTDM 1040 G ++ + + + + ++ G + + Sbjct: 410 VKPGRKIFDKQIIGESVNSNLKNDVFGIEEIRDVKAKISGQIFFPQINSKQFGKIFWIIS 469 Query: 1041 IDGQTITRQTDELTGLSSLV---------VLDSAERTAGGKDLRPA----LKIVDAQGND 1087 + T LT S V K+L P L I N Sbjct: 470 SIIMSFTSLFFHLTKKFSFKNKLICPTTNVHKKELFVNRKKELFPRKFGKLFINIRNVNS 529 Query: 1088 VLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTK---DITGGLPRVADL 1144 ++ + + I+ +D V + + + + L Sbjct: 530 LVDKSKVLKKRSSHIITCIL-DQDKVIMLRNLKKQKRIFGNFKIGCFLKTGQIISNFKLL 588 Query: 1145 FEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWR---------Q 1195 ++ +E + ++ F R+ P + + R Sbjct: 589 HSSQIIQERKEFSIFRKVMPFSTNDDTLMRIEDKPFIRKNQLLYRVNFVREKTYDIVQGL 648 Query: 1196 LNVFEGERVERGDVISDGPEAPHDIL----------------RLRGVHAVTRYIVNEVQD 1239 V + + + PHDIL + + +Y+++ VQ Sbjct: 649 PKVEKLLEARMTSSLKEIINNPHDILTESFFTFLDDYENLVAARKSFEVIQKYLIDGVQT 708 Query: 1240 VYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVG 1299 VY+ QGVKI DKHIE+IV+Q+ K + N G S F+ G+ ++ + V++ N+ L + Sbjct: 709 VYKSQGVKIADKHIELIVKQITSKVIVTNPGDSSFMVGDFLDLNLVEVLNKRLVNS---- 764 Query: 1300 ATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPA 1359 Y ++G+T+ SL+++SFI+ ASFQETTRVLT+AA+ G+ D L GLKEN+++G +IPA Sbjct: 765 IVYEPIIMGLTRFSLSSQSFIAQASFQETTRVLTKAALQGRADWLSGLKENLVLGNIIPA 824 Query: 1360 GTGY 1363 GTG+ Sbjct: 825 GTGF 828 >UniRef50_P14248 DNA-directed RNA polymerase II subunit RPB1 n=48 Tax=Eukaryota RepID=RPB1_PLAFD Length = 2452 Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats. Identities = 157/724 (21%), Positives = 272/724 (37%), Gaps = 114/724 (15%) Query: 1 MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60 M L + + + +++ + P++I+ S E+ + + P GL R Sbjct: 1 MTVDLNIPYSACELKRVKRLELGVLDPEIIKKISVCEIVNVDIY--KDGFPREGGLNDIR 58 Query: 61 IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFL--- 117 + +C C + V GHIELA P H F+ Sbjct: 59 MGTI---------------DYRTLCGTCNMNVKYCP---GHFGHIELAKPMYHYGFMNVV 100 Query: 118 ----KSLPSRIGLLLD----MPLRDIERVLYFESYVVI---------------------- 147 + + G LL ++ IE++ + Sbjct: 101 LNVLRCVCYHCGRLLCNVNSSKVKYIEKIKVNSLRLRKLAELCLGIRACDHSVEEEGLNI 160 Query: 148 -----------EGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDL-- 194 + N+ +Q +L + Y + E E D G + + ++ Sbjct: 161 NDNSLNNFYNNDLSNLNMNQQMLLNKSNYTNIFEMVSKE-DVDCGCVQPKYSREGPNMYI 219 Query: 195 ------EQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPD 248 E++ ++ + +L+ + KK+ K + F P +ILT +P+ PP Sbjct: 220 QFLHSSEEDIDESKRKLSAEEALEILKKIRKEEMSILGFNSDRCVPASLILTCIPIPPPC 279 Query: 249 LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLD 308 RP V G + + DL ++ N +LKR D A ++++ +LQ + L D Sbjct: 280 ARPYVQY-GNQRSEDDLTLKLLDIVKTNIQLKRQTDRGAKSHVLQDLCSLLQFHITTLFD 338 Query: 309 NGRRGRAI-TGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCG 367 N G I T +K+P+K++ +KGK+GR R NL+GKRVD+S R+VIT P L + G Sbjct: 339 NDIPGMPIATTRSKKPIKAIRTRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLNIDYIG 398 Query: 368 LPKKMALELFKPFIYGKLELRGLATTI------KAAKKMVEREEAVVWD----------- 410 +PK +A+ L L L + K + R+ +D Sbjct: 399 VPKSVAMTLTFCETVTPLNYDNLKKLVERGPYEWPGAKYIIRDNGTKYDLRHVRRNSEKE 458 Query: 411 ------ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGD 464 + + E +L NR P+LH++ I + ++ +L+ V + YNADFDGD Sbjct: 459 LEYGYKVERHMTDEDYILFNRQPSLHKMSIMGHKAKILPYSTFRLNLSVTSPYNADFDGD 518 Query: 465 QMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKGE 523 +M +H+ + E + E + LM+ I+SP +P++ QD +L + T RD K E Sbjct: 519 EMNLHLAQSHETRSEIKHLMIVQRQIVSPQGNKPVMGIVQDSLLAIRKFTRRDNFLTKEE 578 Query: 524 GMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIV 583 M L Y + + A +K R G+ + L+ + Sbjct: 579 VMSLLIWIP----YWNHVIPTPAIIKPRALW-----TGKQIFSMLLQFDDMNIEDDKNDT 629 Query: 584 PKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYA----ARSGASV 639 VN + K + +NT T D + G AY+ + + Sbjct: 630 ANNKVGRDVNTNVNKDSSK--MNTSGNYYYGNSTNDNTDDYLEKGNAYSRSGNNHPNSPL 687 Query: 640 GIDD 643 I D Sbjct: 688 SIGD 691 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 57/369 (15%), Positives = 122/369 (33%), Gaps = 34/369 (9%) Query: 571 DTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFA 630 +I L I+ + + +++ + +G T F + Sbjct: 756 PYCSINDGKVIIKNNELLSGIICKRTVGSSSGSLIHVLWHEMGPDKTKDFLSALQKVTNN 815 Query: 631 YAARSGASVGIDDMVIPEKK----HEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIW 686 + G +V D++ K EI+ ++++EV+++ E+ Q G + + Sbjct: 816 WLEYVGFTVSCSDIIASNKVLGKVREILDKSKSEVSKLVEKAQKGELECQPGKSLYESFE 875 Query: 687 AAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGL 746 N + L + E N+I+ M SG++GS I Q+ G Sbjct: 876 TRVN--------NELNCAREMAGKVASESLDERNNIFSMVASGSKGSIINISQIISCVGQ 927 Query: 747 MAK--------------------PDGSIIETPITANFREGLNVLQYFISTHGARKGLADT 786 G ++ ++ GL + F G R+G+ DT Sbjct: 928 QNVEGKRIPFGFNHRSLPHFIKFDYGPESRGFVSNSYLSGLTPQEVFFHAMGGREGIIDT 987 Query: 787 ALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVK--EPLRDRVLGRVT 844 A KT+ +GY+ RRL+ +D++V D + + + G D E + D+++ + Sbjct: 988 ACKTSETGYIQRRLIKAMEDVMVQYDRTVRNSYGDIIQFLYGEDGMAGEYIEDQIIDLMK 1047 Query: 845 AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA 904 ++ + + + S + + + ++ Sbjct: 1048 LDNKEINKLYKYNFDEEPFGKDYYIGNKNDGSRNTTYIDYNKQNILNQEFEELYKCKNYL 1107 Query: 905 RGHIINKGE 913 I G+ Sbjct: 1108 CKEIFPDGD 1116 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 41/244 (16%), Positives = 79/244 (32%), Gaps = 44/244 (18%) Query: 1158 EISGIVSFGKETKGKRRLVITPVDGSDPYE--EMIPKWRQLNVFEGERVERGDVISDGPE 1215 ++ GI + K + + D + N+ + D Sbjct: 1881 KLRGIENITKVYMREESKITYDSDNGKFVRSSHWVLDTDGCNLENIFCAPQVDFKKTVSN 1940 Query: 1216 APHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFL 1275 +I + G+ AV R ++ E++ V +N +H+ ++ M +K Sbjct: 1941 DIVEIFEVLGIEAVRRALLKELRTVISFDSSYVNYRHLSILCDVMTQK------------ 1988 Query: 1276 EGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLAT--ESFISAASFQETTRVLT 1333 L+ IT+ + + + SF+ET +L Sbjct: 1989 ----------------------------GYLMSITRHGINRVDKGPLIKCSFEETVEILL 2020 Query: 1334 EAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQVTAEDASASL 1393 EAA + D LRG+ EN+++G+L GTG ++ A + Sbjct: 2021 EAAAFAQVDNLRGITENIMLGQLCKIGTGSFDIIIDNQKLNDANQNLETIQDLTSAGFTT 2080 Query: 1394 AELL 1397 + L Sbjct: 2081 PDSL 2084 Score = 89.2 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 36/196 (18%), Positives = 71/196 (36%), Gaps = 13/196 (6%) Query: 903 LARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSN 962 + + + GE +G +AAQSIGEP TQ+T+ TFH G S+ ++K +I + Sbjct: 1393 IFYKSLCHPGECVGALAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINIVKN- 1451 Query: 963 VKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDP 1022 + + +T + L D ++ K + + + + + + + Sbjct: 1452 ------------VKTPSTTIYLDDMVSNDQQKAKDILTKLEYTTLKQLTSHAQIIYDPNT 1499 Query: 1023 HTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVD 1082 T + + S F + D E L + E+ K++ + V Sbjct: 1500 TTTILEEDKSWVNEFYEFPDEDDTQYSLGEWVLRIQLTNIHVNEKKLTMKEIVYIIYSVF 1559 Query: 1083 AQGNDVLIPGTDMPAQ 1098 + +I D Sbjct: 1560 SSDELDIIYTDDNSED 1575 >UniRef50_B3L428 DNA-directed RNA polymerase n=27 Tax=Eukaryota RepID=B3L428_PLAKH Length = 2353 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 140/647 (21%), Positives = 247/647 (38%), Gaps = 103/647 (15%) Query: 1 MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60 M L + + + +++ + P++I+ E+ + + P GL R Sbjct: 1 MTVDLNVPYSACELKRVKRLELGVLDPEIIKKIGVCEIVNVDLY--KDGLPREGGLNDIR 58 Query: 61 IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFL--- 117 + +C C + V G+IELA P H F+ Sbjct: 59 MGTI---------------DYKTLCGTCNMNVKYCP---GHFGYIELAKPMYHYGFMNVV 100 Query: 118 ----KSLPSRIGLLL----DMPLRDIERVLYFESYVVI---------------------- 147 + + G LL + ++ IE++ + Sbjct: 101 LNVLRCVCYHCGRLLCNMNNSKVKYIEKIKVNSLRLKRLSDVCQGIKVCDHSSPQEEDSL 160 Query: 148 ------------EGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDL- 194 QQ+L + E ++ D G + + ++ Sbjct: 161 HLNDNAVDNFYNNNLSNLNVNQQMLLNPNSYSNIFEMVNKEDVDCGCVQPKYSREGPNMF 220 Query: 195 -------EQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPP 247 E++ ++ + +L+ + KK+ K + F P +ILT +P+ PP Sbjct: 221 IQFLHSSEEDIDESKRKLSAEEALEILKKIRKEEMPILGFDSDRCIPASLILTFIPIPPP 280 Query: 248 DLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALL 307 RP V G + + DL ++ N +LKR D A ++++ +LQ + L Sbjct: 281 CARPYVQY-GNQRSEDDLTLKLLDIVKTNIQLKRQTDRGAKSHVLQDLCALLQFHITTLF 339 Query: 308 DNGRRGRAI-TGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQC 366 DN G I T +K+P+K++ +KGK+GR R NL+GKRVD+S R+VIT P L + Sbjct: 340 DNDIPGMPIATTRSKKPIKAIRTRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLNIDYI 399 Query: 367 GLPKKMALELFKPFIYGKLELRGLATTI------KAAKKMVEREEAVVWD---------- 410 G+PK +A+ L L + + K + R+ +D Sbjct: 400 GVPKSVAMTLTFCETVTPLNYDDMKKLVERGPYEWPGAKYIIRDNGTKYDLRHVRKNSER 459 Query: 411 -------ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDG 463 + + E +L NR P+LH++ I + ++ +L+ V + YNADFDG Sbjct: 460 ELEYGYKVERHMTDEDYILFNRQPSLHKMSIMGHKAKILPYSTFRLNLAVTSPYNADFDG 519 Query: 464 DQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-RDCVNAKG 522 D+M +H+ + E + E + LM+ I+SP +P++ QD +L + T RD K Sbjct: 520 DEMNLHLAQSHETRSEIKHLMIVQKQIVSPQGNKPVMGIVQDSLLAIRKFTRRDNFLTKE 579 Query: 523 EGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSL 569 E M L Y + + A +K + K L+ L Sbjct: 580 EVMSLLIWIP----YWNHVIPTPAIMKPKALWTGKQIFSMLLQFEDL 622 Score = 215 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 53/307 (17%), Positives = 111/307 (36%), Gaps = 34/307 (11%) Query: 571 DTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFA 630 +I L I+ + + +++ + +G T F + Sbjct: 722 PYCSVNDGKVIIKNNELLCGIICKRTVGSSSGSLIHILWHEMGPDKTKDFISALQKVTNN 781 Query: 631 YAARSGASVGIDDMVIP----EKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIW 686 + G +V D++ +K +I+++++ EV++I ++ Q G + + Sbjct: 782 WLEYIGFTVSCSDIIASNKVLDKVKDILNKSKREVSKIVKKAQRGELECQPGKSLYESFE 841 Query: 687 AAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGL 746 N + L + E N+I+ M SG++GS I Q+ G Sbjct: 842 TRVN--------NELNCAREMAGKVASESLDERNNIFSMVASGSKGSIINISQIISCVGQ 893 Query: 747 MAK--------------------PDGSIIETPITANFREGLNVLQYFISTHGARKGLADT 786 G ++ ++ GL + F G R+G+ DT Sbjct: 894 QNVEGKRIPFGFNHRSLPHFIKFDYGPESRGFVSNSYLSGLTPQEVFFHAMGGREGIIDT 953 Query: 787 ALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVK--EPLRDRVLGRVT 844 A KT+ +GY+ RRL+ +D++V D + + + G D E + D+++ + Sbjct: 954 ACKTSETGYIQRRLIKAMEDVMVQYDRTVRNSYGDIIQFLYGEDGMAGEYIEDQIIDLMK 1013 Query: 845 AEDVLKP 851 ++ Sbjct: 1014 LDNKEVK 1020 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 37/243 (15%), Positives = 77/243 (31%), Gaps = 44/243 (18%) Query: 1158 EISGIVSFGKETKGKRRLVITPVDGSDPYE--EMIPKWRQLNVFEGERVERGDVISDGPE 1215 ++ GI + K + + + + N+ D Sbjct: 1755 KLRGIENITKVYMREESKITYDSNNGKFVRSSHWVLDTDGCNLEHIFCAPHVDYKKTISN 1814 Query: 1216 APHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFL 1275 +I + G+ AV R ++ E++ V +N +H+ ++ M + Sbjct: 1815 DIVEIFEVLGIEAVRRALLKELRTVISFDSSYVNYRHLSILCDVMTQ------------- 1861 Query: 1276 EGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLAT--ESFISAASFQETTRVLT 1333 L+ IT+ + + SF+ET +L Sbjct: 1862 ---------------------------RGYLMSITRHGINRVDRGPLVKCSFEETVEILL 1894 Query: 1334 EAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQVTAEDASASL 1393 EAA + D L+G+ EN+++G+L GTG ++ + + A + Sbjct: 1895 EAAAFAQVDNLKGITENIMLGQLCKIGTGVFDIIIDNQKLSDANQNLETMMDITSAGFTT 1954 Query: 1394 AEL 1396 + Sbjct: 1955 PDS 1957 Score = 88.4 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 42/274 (15%), Positives = 91/274 (33%), Gaps = 16/274 (5%) Query: 837 DRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCA 896 +R L ++ + L +N L + + +S + Sbjct: 1247 NRFLEKLVIIKQINSNDTLSLEAQNNATVLLKAHLRTYLNSKLLTQTHKISMKGIDWLLQ 1306 Query: 897 HCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKG 956 + + GE +G +AAQSIGEP TQ+T+ TFH G S+ ++K Sbjct: 1307 EIE--KNFYKSLCHPGECVGALAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELI 1364 Query: 957 SIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGET 1016 +I + + + +T + L D ++ K + + + + Sbjct: 1365 NIVKN-------------VKTPSTTIYLDDIVSNDQQKAKDILTKLEYTTLKQLTSHAQI 1411 Query: 1017 VANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRP 1076 + + + + + + + F + D E L + E+ K++ Sbjct: 1412 IYDPNTTSTILEEDKTWVDEFYEFPDEDDTQYTLGEWVLRIQLTNIHVNEKKLTMKEIVC 1471 Query: 1077 ALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLE 1110 + V + +I TD ++ + + L Sbjct: 1472 IIYSVFSSDELDIIY-TDDNSEDLILRIRVKYLN 1504 >UniRef50_Q06VN9 DNA-directed RNA polymerase n=1 Tax=Trichoplusia ni ascovirus 2c RepID=Q06VN9_TNAVC Length = 833 Score = 453 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 163/865 (18%), Positives = 283/865 (32%), Gaps = 90/865 (10%) Query: 16 EFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKY 75 E +I L S + + S EV + GP D Sbjct: 2 EISSIDFELMSDNDMEELSTYEVTRHRQ-------------------GPNNDTTGTVFDI 42 Query: 76 KRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDI 135 + C CG GHI LA P H FL + + ++ + I Sbjct: 43 RSGAQGNKPCGTCGQGAYDCP---GHFGHINLAKPIIHPLFLHQVRDIMRIICRACHKPI 99 Query: 136 ERVLYFESYVVIE---GGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSM 192 + + + + Q + + ++ + K Sbjct: 100 MTEKKVKKIISSDSVGPKRISDLVQLVDRRGIFCMHCNTVPAQYKLSAMPTTKTSKAKKK 159 Query: 193 DLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPL 252 C+ + + N E L + + P MIL V+PP R L Sbjct: 160 IHRVLCQVIGTQKKWLNDEEVATILDDIPQDCVDTILKTVHPSRMILRKWLVIPPVCRHL 219 Query: 253 VPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDN--G 310 DL L ++ NN K L +++ V + Sbjct: 220 ENGRSDIQRDDDLTVLLCDIVRLNNIAKDLTQS-------CDDRDKALADVKTKISVYCT 272 Query: 311 RRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPK 370 + N ++ + D IKGK G R NLLGKR + +GR+VI P L+L Q G P+ Sbjct: 273 NTAKVKRNDNGDMVRGIIDRIKGKHGLIRNNLLGKRSEMAGRTVIGPDPTLKLDQVGFPR 332 Query: 371 KMALELFKPFIYGKLELRGLATTI-KAA-KKMVEREEAVVWD--------ILDEVIREHP 420 MA L+ P + L+ + K + R + D I + Sbjct: 333 VMAQHLYIPEKVTESNLQWAEQMVLHNGTKPRIIRNGKMKKDCAIQCGDFICRPLQDGDI 392 Query: 421 VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480 VL+NR PTLH+ + AF L E L+ A+NADFDGD+M VP ++ A +E Sbjct: 393 VLMNRQPTLHKGSMMAFRIRLHESLTFTLNLATTKAFNADFDGDEMNCFVPQSVAASVEL 452 Query: 481 RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLT-GPKEAERLYRS 539 + L T + S + I QD + Y M+ + + + A S Sbjct: 453 QHLSTPTACLNS--GDKASICIVQDCLTAAYCMSIEDIYEHTVPRDVAFDIILASNANVS 510 Query: 540 GLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKK 599 L ++ R NG+++ + + +I L +++ Sbjct: 511 NLLEKIDYIRHRFNIPRHVFNGKMLISLAFPAMFYFQCGDLIIDDGILISGCLSKRTLGP 570 Query: 600 AISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEA 659 ++ + F D++ + A+ G +V D + E+IS Sbjct: 571 TRDSIIRKIGNDISRGAAGEFVDRLQFITTAWMTYKGFTVTAKDFL---HAGELISNIAD 627 Query: 660 EVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSF 719 + ++ + ++ I A A D + N T+ Sbjct: 628 SKMADVRHMCNTIIDENLKEYRINTILATAKDVGMNIVKKNSGTDC-------------- 673 Query: 720 NSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSII------------------------ 755 +++ +M +SG++G + Q GM G I Sbjct: 674 SNLAIMIESGSKGDYFNVGQTKGMLGQQLVNGCRIPMVINDGMRSCVHSKFSETRHDVLI 733 Query: 756 --ETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDD 813 IT F GL+ ++ R+ + +A +TA++GY TRR+ +D+++ D Sbjct: 734 KNRGFITRGFSNGLDPREWIFHCMSGRESVCSSATETADTGYTTRRVNKFGEDIIIHNDG 793 Query: 814 CGTHEGIMMTPVIEGGDVKEPLRDR 838 ++ + G +P + Sbjct: 794 VVADNNGIIYQMAYGDLGLDPEKTS 818 >UniRef50_B9F2S6 DNA-directed RNA polymerase n=3 Tax=Poaceae RepID=B9F2S6_ORYSJ Length = 2017 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 151/970 (15%), Positives = 321/970 (33%), Gaps = 145/970 (14%) Query: 5 LKFLKAQTKTEE--FDAIKIALASPDMIRSWSF--GEVKKPETINYRTFKPERDGLFCAR 60 ++ ++ E +IK++L++ D IR++S V P + Sbjct: 1 MEEDQSAIPVAEGAIKSIKLSLSTEDEIRTYSINDCPVTHPS-----------------Q 43 Query: 61 IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120 + P GK CE CG + G+IEL P H Sbjct: 44 LGNPFLGLPLETGK----------CESCGAS--ENGKCEGHFGYIELPVPIYHP----CH 87 Query: 121 PSRIGLLLDMPLRDIERVLYFESYV---------VIEGGMTNLERQQILTEEQYLDALEE 171 + + +L++ RV + + +L + + A Sbjct: 88 VTELRQILNVVCLKCLRVKKGKVKQTEGKDNTSALSCYYCRDLPALSLKEIKTADGAFRL 147 Query: 172 FGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSG 231 K E L L + KK+ + K A + Sbjct: 148 ELKMPPRKFMTEGSWNFLDKYGFHHGGTSHCRTLLPEEALNILKKIPEETKRKLA-ARGY 206 Query: 232 NKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLN-DLYRRVINRNNRLKRLLDLAAPDI 290 ++ LPV P L DG + D++ L ++V+ + ++K+ + Sbjct: 207 IAQSGYVMKYLPVPPNCLYIPEFTDGQSIMSYDISISLLKKVLQKIEQIKKSRAGSPNFE 266 Query: 291 IVRNEKRMLQEAVDALLDNGRRGRAITGSNKR-PLKSLADMIKGKQ--GRFRQNLLGKRV 347 E LQ ++ + R + KR + + + KQ + R + K Sbjct: 267 SHEVESCDLQLSIAQYIHLRGTTRGPQDNTKRFAISTDPSALSTKQWLEKMRTLFISKGS 326 Query: 348 DYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAV 407 +S RSV+T PY+ + GLP ++A + + L L + + R+ Sbjct: 327 GFSSRSVLTGDPYIGVDVIGLPSEVAKRITFEEQVTDINLNRLQEIVDKGLCLTYRDGQA 386 Query: 408 VW----------------DILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHP 451 + I ++ V LNR P+ H+ +QAF + E ++++P Sbjct: 387 TYAITVGSKGHTTLKVGQTISRRIVDGDVVFLNRPPSTHKHSLQAFRVYVHEDHTVKINP 446 Query: 452 LVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLY 511 L+CA + ADFDGD + ++ P +L A+ EA L + S +G+ + D +L L Sbjct: 447 LICAPFAADFDGDCVHIYYPQSLAAKAEALELFSVEKQLTSSHSGKVNLQLVSDSLLALK 506 Query: 512 YMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKD 571 +M+ + +K L + + + + + + +L Sbjct: 507 HMSSRTMLSKEAANQLAM------------LVTCSLPDPAVIKSKPYWTISQIVQGALPK 554 Query: 572 TTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAY 631 + ++ + +++ + + S ++ + + G + F + + Sbjct: 555 ALTSQGDKHVVRDSTIIKLDLDKESVQTSFSDLVYSTLSVKGPGEALQFLNVLQPLLMEL 614 Query: 632 AARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERY--NKVIDIWAAA 689 G SV + D +P+ ++ EA+ + + L+ R+ N+V+++ Sbjct: 615 ILLDGFSVSLQDFNVPKV---LLEEAQKNIEK------QSLILEQSRFAENQVVEMRVDN 665 Query: 690 NDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAK 749 N + K + + + + + ++ D + S +++ Q G GL Sbjct: 666 NLKDIKQQISDFVVKR--------------SHLGLLIDPKSDSSVSKVVQQLGFVGLQLY 711 Query: 750 PDGSIIE---------------------------TPITANFREGLNVLQYFISTHGARKG 782 +G + +++ GLN + + R+ Sbjct: 712 REGKFYSRRLVEDCYYTFVNKHPAVREEHSPEAYGLVRSSYFHGLNPYEELVHAISTREA 771 Query: 783 LADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTH-EGIMMTPVIEGGDVKEPLRDRV-- 839 + ++ G L + L+ + +D+V+ D + + + D + Sbjct: 772 IVRSSRGLTEPGTLFKNLMALLRDVVICYDGTVRNVCSKSIIQLNYTEDDALDFPSAIGP 831 Query: 840 ---LGRVTAEDVLKPGTADIL--VPRNTLLHEQWCDLLE------ENSVDAVKVRSVVSC 888 +G + A + P +L N E+ ++L+ + D + + C Sbjct: 832 GEPVGVLAATAISNPAYKAVLDASQSNNTSWERMKEILQTTSRYKNDMKDRKVILFLNDC 891 Query: 889 DTDFGVCAHC 898 C Sbjct: 892 SCAKKFCKEK 901 >UniRef50_P16355 DNA-directed RNA polymerase I subunit RPA1 n=4 Tax=Trypanosoma brucei RepID=RPA1_TRYBB Length = 1744 Score = 434 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 184/1073 (17%), Positives = 319/1073 (29%), Gaps = 218/1073 (20%) Query: 88 CGVEVTQTKVRRERMGHIEL-----ASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYF- 141 C E + +V + G +++ +H+ S + L+ + + Sbjct: 192 CSEEDAKARVTMAQKGTVDVRNDICNMAISHLRSFSGPCSHCTAISPTFLKRGGIIFFLF 251 Query: 142 -ESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQ 200 +S +V L +Q++ E G FD + ++ L + Sbjct: 252 RKSNLVTNIAKGFLTQQEVSEWEAVNRLHGRTGTYFDGRQMLFHMKNLFA--KEQAILGL 309 Query: 201 LREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPL---DG 257 L L E + TK K+ + + + L + V P LR + D Sbjct: 310 LYPNLGEPSVFTKTNKVV----------PASERYKLFFLDRILVPPLPLRLSSGVRVNDN 359 Query: 258 GRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAIT 317 G + ++ +++ L+A R+ Q AV N R + Sbjct: 360 GLIIPDEQTRALSDILGFVEQIECFHTLSANSTNGRSFITDAQRAV-----NESNLRNLQ 414 Query: 318 GSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELF 377 + + K+G FR N++GKRV+ + RSVI+ P++ ++ LP+ +A L Sbjct: 415 QKVDEFYAEIVNSFAKKEGLFRMNMMGKRVNQACRSVISPDPFVEPNEVLLPRPLARALS 474 Query: 378 KPFIYGKL---ELRGLATTIKAAKKMVER------------------------------- 403 P + L + + Sbjct: 475 FPEQVTCFAPARMNLLKHCVVNGPRKYPGATHIELRHANGEIRSVDLNVPEQTRRQHAAR 534 Query: 404 -----EEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAY 457 + V + ++ V+ NR PTLH+ + + ++ G K I+ H + ++ Sbjct: 535 FFAMAQSGVTLIVYRHILNGDRVIFNRQPTLHKPSMMGYRVKVLSGSKTIRFHYVNGNSF 594 Query: 458 NADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT-RD 516 NADFDGD+M VHVP ++E + E LM + N L P +G PI QD V +T RD Sbjct: 595 NADFDGDEMNVHVPQSIETRAEVETLMDANINYLVPTSGRPIRGLIQDHVAAGVLVTLRD 654 Query: 517 CVNAKGEGMVL------TGPKEAERLYRSGLASLHARVKVRITEYEK------------- 557 + L +E + + L + A + R K Sbjct: 655 KFFDHSTFVQLVYNGVGPYIQENVGITLAELIPIPAILMPRPMWTGKQLISVMVRFSSGL 714 Query: 558 ----DANGELVAKTSLKDTTVGRAILWMIVPKG-----------------------LPYS 590 D E+ +LK T+ + + +P G L Sbjct: 715 SAASDCGREIEGGITLKGTSQIQPSAFDRIPAGSCDAVRAKSGAVVDSTVMFANSELITG 774 Query: 591 IVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKK 650 + + + + Y + G T + G S+ +DDM + ++ Sbjct: 775 FMCKKQLGASNMSAPHHVYELYGPHRTGQLFAAFGRVLLLALRKEGLSLAMDDMFLVDE- 833 Query: 651 HEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRD 710 E +++ L E + + D Sbjct: 834 -------ERRCDLLRKLDDIALDVPDE------------EATAAPMIADYATKIQQEFVP 874 Query: 711 GQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLM--------------AKPDGSIIE 756 + N + +M SGA+GS Q++ G P E Sbjct: 875 QRMLVPFPKNHLLLMTISGAKGSNLNATQMSLQLGQQLFDGLRVKRMNSSKTLPSFFTNE 934 Query: 757 ------TPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVT 810 +F G+ +Y I R GL DTA+KT+ SG+L R L+ + LVV Sbjct: 935 KRARSFGFAMGSFASGIRPAEYTIHAMAGRDGLIDTAVKTSRSGHLQRCLIKGLESLVVH 994 Query: 811 EDDCGTHEGIMMTPVIEGGDVKEPLRDRVL------------------------------ 840 D + + GGD +P + L Sbjct: 995 WDRTVRDSNGSVIQFMYGGDGLDPCKASTLTAWEMMKDNVVDVSKRFGGDASESVAGAED 1054 Query: 841 -------------GRVTAEDVLKPGTADIL------VPRNTLLHEQWCDLLEENSVDAVK 881 G+ T E V L + L E C + V Sbjct: 1055 GAAAGLKEMRNEDGKPTTEAVQNAHMEQQLSTYPLPASLDKSLSEYLCKKADFPLFRKVS 1114 Query: 882 VRSVVSCDTDFGV---CAHCYGRDLARGHIINKGEAIGVIAAQSIGEP------------ 926 + + + + A GEP Sbjct: 1115 TLARWDAKQQLKERLQQRRQKWVGAFEKTLADITARRRLWALCEPGEPVGLLAAQAAGEP 1174 Query: 927 GTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRN 979 TQ+T+ TFH G+ E +++ N +VV Sbjct: 1175 STQMTLNTFHTAGSTVSHVTEGIPRLRELLIYASVNKAAVVVPVTNATEEDEK 1227 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 18/153 (11%), Positives = 41/153 (26%), Gaps = 40/153 (26%) Query: 1214 PEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD 1273 D+ G+ + + +E+ ++ ++ +H+ +I + N + Sbjct: 1616 STDIRDMGTYFGIESGYAALYDELNKLFNRY--NVDPRHLSLIADTSTHRGRWENFNFTG 1673 Query: 1274 FLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLT 1333 + + S + +F + R L Sbjct: 1674 VI--------------------------------------STSASPLFQMTFASSKRWLH 1695 Query: 1334 EAAVAGKRDELRGLKENVIVGRLIPAGTGYAYH 1366 A G D+L ++VG GT Sbjct: 1696 RAVSRGMSDDLESFSSAIMVGERPRVGTASVRL 1728 >UniRef50_P22705 DNA-directed RNA polymerase subunit beta' n=8 Tax=Cyanobacteria RepID=RPOC2_ANASP Length = 1355 Score = 433 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 204/641 (31%), Positives = 324/641 (50%), Gaps = 72/641 (11%) Query: 586 GLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMV 645 N+ + K + +++ + G T + AD++ GF YA R+G S+ +DD++ Sbjct: 3 NEKMIFRNRVVDKGQLRNLISWAFTHYGTARTAVMADKLKDLGFRYATRAGVSISVDDLM 62 Query: 646 IPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTET 705 +P K ++ AE E+ + ++Q G +T ER+ KVID W ++ + ++ + + Sbjct: 63 VPPSKRSLLEAAEEEIRATEVRYQRGEITEVERFQKVIDTWNGTSEALKDEVVTHFKQTN 122 Query: 706 VINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFRE 765 NS+YMMA SGARG+ +Q+RQL GMRGLMA P G II+ PI NFRE Sbjct: 123 ------------PLNSVYMMAFSGARGNISQVRQLVGMRGLMADPQGEIIDLPIKTNFRE 170 Query: 766 GLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPV 825 GL V +Y IS++GARKGL DTAL+TA+SGYLTRRLVDV+QD+++ E DCGT GI + P+ Sbjct: 171 GLTVTEYIISSYGARKGLVDTALRTADSGYLTRRLVDVSQDVIIREIDCGTTRGIPVRPM 230 Query: 826 IEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSV 885 EG L R+LGRV EDV+ P T +++ PRNT + + +E+ V V VRS Sbjct: 231 TEGSKTLIKLSTRLLGRVVGEDVIHPKTKEVIAPRNTPISDDLAKEIEKAGVAEVVVRSP 290 Query: 886 VSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAA 945 ++C+ VC HCYG LA +++ GEA+G+IAAQSIGEPGTQLTMRTFH GG + Sbjct: 291 LTCEAARSVCQHCYGWSLAHAKMVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTGEV 350 Query: 946 AESSIQVKNKGSIKLS---NVKSVVNSSGKLVITSRNTELKLIDEFGRTKES-----YKV 997 A+ ++ K G+IKL ++ G+ + + + +++ E+ V Sbjct: 351 AQQ-VRSKMDGTIKLPRKLRTRTHRTRHGEDALFVESNGIMILEPRKEGSETPAPQEIHV 409 Query: 998 PYGAVLAKGDGEQVAGGETVANW-----------DPHTMPVITEVSGFVRFTDMIDGQTI 1046 G+ + DG+QV G+ +A + V ++++G V+F +++ Q Sbjct: 410 TQGSTIYIVDGQQVKKGQLLAEVALGGRTTRTNTEKAVKDVASDLAGEVKFAEVVPEQKT 469 Query: 1047 TRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAI 1106 RQ + T A+G + I ++ Y LP A Sbjct: 470 DRQGNTTT--------------------------TAARGGLIWILSGEV---YNLPPGAE 500 Query: 1107 VQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILA---EISGIV 1163 + +++G ++ + LA I GG+ R+ + + +E I+ + Sbjct: 501 LVVKNGDRVETNGVLAET-----KLTTIHGGVVRLPEATPGKSTREIEIITASVVLDQAT 555 Query: 1164 SFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV 1204 + ++G+ +IT + + V G+ V Sbjct: 556 VTVQSSQGRNNYLIT---TGNNQVFNLRATPGTKVQNGQVV 593 Score = 305 bits (780), Expect = 9e-81, Method: Composition-based stats. Identities = 143/426 (33%), Positives = 191/426 (44%), Gaps = 36/426 (8%) Query: 1000 GAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSL 1059 L DG+ + G VA + V G + ++ + + R +D T S Sbjct: 859 QTSLEVKDGDTIVPGSVVARTQILSKEG-GIVRGVQKGSEAVRRCLVLRHSDMATLNISA 917 Query: 1060 VVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPA--------------------QY 1099 A + G V + Y Sbjct: 918 KPKVKAGDLIVAGTELAPGIFAEESGQIVGVKNAGESTTTQDAALSTQNYAVTIRAGRPY 977 Query: 1100 FLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEI 1159 + A++Q+EDG + GD L + E T DI GLPR+ +L EAR+PKE ILA+ Sbjct: 978 RVSPGAVLQIEDGDLVQRGDNLVLLVFERAKTGDIIQGLPRIEELLEARKPKEACILAKR 1037 Query: 1160 SGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHD 1219 G V + + + + + L + +G V G +SDGP PH+ Sbjct: 1038 GGEVKVVYGDGDEAIAIKVIESNGVVTDYPLGPGQNLAMPDGSVVPAGQPLSDGPSNPHE 1097 Query: 1220 ILRLRG---------------VHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKA 1264 IL + + V ++VNEVQ VY+ QG+ I DKHIEVIVRQM K Sbjct: 1098 ILEVFFSLGSEDGVYACASHALQKVQTFLVNEVQMVYQSQGIDIADKHIEVIVRQMTNKV 1157 Query: 1265 TIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAAS 1324 I + G + L GE VE +V+ N + G A Y+ LLGITKASL T+SFISAAS Sbjct: 1158 RIDDGGDTTMLPGELVELRQVEQVNEAMAITGGARAQYTPVLLGITKASLNTDSFISAAS 1217 Query: 1325 FQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQV 1384 FQETTRVLTEAA+ GK D LRGLKENVI+GRLIPAGTGY + + + Sbjct: 1218 FQETTRVLTEAAIEGKSDWLRGLKENVIIGRLIPAGTGYNTYDEPGMLEDYSTLETTSVL 1277 Query: 1385 TAEDAS 1390 D Sbjct: 1278 DETDDP 1283 >UniRef50_Q9AW39 DNA-directed RNA polymerase n=1 Tax=Guillardia theta RepID=Q9AW39_GUITH Length = 1434 Score = 426 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 202/1351 (14%), Positives = 415/1351 (30%), Gaps = 223/1351 (16%) Query: 124 IGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQI-LTEEQYLDALEEFGDEFDAKMGA 182 I + + +L+ ++ + +NL I E L+ + Sbjct: 200 IKEIKCHNCKTNNSLLHIKNSFQVNFKSSNLSILMIDFYLELNLNYKYDLNLNNLKYCSY 259 Query: 183 EAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVL 242 + K ++ E L N R + ++ F S + + Sbjct: 260 NNLNFNRKELNFFNFKEIFISILANDNYGNSRFINLEPFEVFLKFNTS----SIFFIDYI 315 Query: 243 PVLPPDLRP--LVPLDGGRFATSDLNDLYRRVINRNNRLKRLL-DLAAPDIIVRNEKRML 299 V P RP L G + N Y ++ N ++ L+ +K + Sbjct: 316 LVTPSRFRPEKLGTTFNGFREKNPHNFFYSLILKINQQILLLIVSENHKFNSKFMDKTIT 375 Query: 300 QEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP 359 Q +++N G K P S+ + ++ K G R N++GKRV S RSVI P Sbjct: 376 QLE--NIIENFFIGTIQLKKKKIP-NSIKNQLEKKSGLIRMNIMGKRVLNSARSVIAPDP 432 Query: 360 YLRLHQCGLPKKMALELFKPFIYGKLELRGL---------------ATTIKAAKKMVERE 404 +L+ + G+PK+ A +L+ P + + + I K+ + Sbjct: 433 FLKTFEVGVPKEFAKDLYVPESINLINILKVFLDFLKIKNFKKKKLILEILNGNKISISQ 492 Query: 405 EAVVWDI--------------------------LDEVIREHPVLLNRAPTLHRLGIQAFE 438 + ++ + L + + +LNR P+LH+ I A + Sbjct: 493 QDFLFKLKKISISYKYFKLFSLFSKNKYGFNKFLRNLKKNDISILNRQPSLHKTSIMAHK 552 Query: 439 PVLIEG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGE 497 +++ K ++LH C +YNADFDGD+M +H+P + E+ + TN P+NG Sbjct: 553 VRILKSSKCLKLHYSNCNSYNADFDGDEMNLHIPQNYLSISESLYIAYVTNQNTIPSNGL 612 Query: 498 PIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEK 557 P+ QD ++ +T+ + + + L + +K K Sbjct: 613 PLRGLIQDQIISGVLLTKKDTFFNKNCIDIFLSNVFSN-KERDILELPSIIKPNFLWTGK 671 Query: 558 DANGELVAKTSLKDTTV--------------GRAILWMIVPKGLPYSIVNQALGKKAISK 603 L K + L +++ + + Sbjct: 672 QIFSILCKTNKFKQRNFFLETKTKLPSSIIGSDENRILFRKGILLKGVIDSSQLGRNKFG 731 Query: 604 MLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAE 663 + Y G ++ + S + D + K + + ++ Sbjct: 732 FFHAFYENFGSVTGDTIMSRLSIFFSIFQVFYNHSCSLQDFFLKTKMEKKLKNIYKLYSK 791 Query: 664 IQEQFQSG------------LVTAGERYNKVIDIWAAANDRVSKAMMDNLQT-------- 703 + ++ Y ++ +N ++ LQ Sbjct: 792 LSLALIKKSFSIFGLCIDSRIIEENSFYKHILSKSLISNSNQKSVILTKLQKSYLNIIYS 851 Query: 704 -ETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDG---------- 752 E + N M G++GS + Q+ + G Sbjct: 852 LNIENFIRLGLEIINTSNGFLKMISYGSKGSNINLFQICLLLGQTELEGSCIPKTFTGKT 911 Query: 753 ----------SIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVD 802 I I F G++ YF R+GL DTA+KT+ SGY+ R ++ Sbjct: 912 LPGFLFNSLDPISNGFIPERFFTGIHPNCYFFHCMAGREGLLDTAIKTSQSGYIQRNIIK 971 Query: 803 VAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLG--RVTAEDVLKPGTADILVPR 860 ++L + D + I D + + R ++ L+ D + Sbjct: 972 HLENLKINYDFTLRMSHNKINSFIFSDDGQRITSIDFISKIRWKFQNSLRTENDDNNLFN 1031 Query: 861 NTLLHEQWCDL-LEENSVDAVKVRSVVSCDTDFG--VCAHCYGRDLARGHIINKGEAIGV 917 N L+ + + + ++ ++ S SC +FG V ++I GE+ G+ Sbjct: 1032 NMKLNSNFTKKNINFHKINFKQIISKRSCKKNFGSFVSYQNILNSNYFENLIEPGESTGI 1091 Query: 918 IAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITS 977 + Q+IGEP TQ+T+ TFH G S + ++K N + + + I + Sbjct: 1092 LCGQAIGEPCTQMTLNTFHYAGKISSHGKQGLPRLKEMLLYNSKNSTNFLVNCRLKSIIN 1151 Query: 978 RNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRF 1037 R K+ F K + V E N++ + + + + Sbjct: 1152 RKYLEKVKRNFSNYKLF--------------DLVESIELYYNYEKKRINLSLKFKIKKKK 1197 Query: 1038 TDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPA 1097 + + + + + P ++ + G+ + +M + Sbjct: 1198 VFVAQKLMENNNIFKCFTNQ----IKNFHKNVMINYKNPFKRLFNNNGDTKIFLNLNMIS 1253 Query: 1098 QYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILA 1157 + K +++ L ++ + Sbjct: 1254 LEIINKKKKFRID---------------------------LGKLFQMNFNITSNFLLSNI 1286 Query: 1158 EISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAP 1217 + + + + + + E ++++ G +E G I Sbjct: 1287 ILDYFTKRIQISGNNIEIFFSLSEFFKIDEIFTSDILKMSIIFG--IEAGREI------- 1337 Query: 1218 HDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEG 1277 + E+ ++++ QG+ I++KHI+ I M R Sbjct: 1338 ---------------LTIELMNIFKNQGIVISNKHIDTISDYMTR--------------- 1367 Query: 1278 EQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAV 1337 L + + E+ I S++ L + A+ Sbjct: 1368 -------------------------LGYLRPFNRNYMKEEAGIQEISYETALLHLKKYAL 1402 Query: 1338 AGKRDELRGLKENVIVGRLIPAGTGYAYHQD 1368 K + + + + + G GTG + Sbjct: 1403 GKKIESIECISDKIAFGLPCNIGTGLFEINN 1433 Score = 47.6 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 27/228 (11%), Positives = 56/228 (24%), Gaps = 26/228 (11%) Query: 1 MKDLLKFLKAQTKTEEFDAIKIAL-ASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCA 59 M + IK IR S E+ P I + LF Sbjct: 1 MDIFVNDFTILDVVSRPKKIKYYFNLDDKNIRKTS-AEIFSP-LIKTSDGFILKGALFDN 58 Query: 60 RIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKS 119 ++ + C+ C + GHI+L P + Sbjct: 59 KLG---------------VNSFYGNCDICKLSYINCS---GHFGHIDLLIPVPNPLTKNF 100 Query: 120 LPSRIGL---LLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQ--YLDALEEFGD 174 L + L + + R + F S + ++ + I E++ +L Sbjct: 101 LLFVLNLNCFYCKSTILEKWRTVTFNSLITVKNSTKKNRKPIIFFEKKVKFLKFKIFLKK 160 Query: 175 EFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIK 222 + + + + + + K++ Sbjct: 161 IKFNYTHNQQKKKFILFKEKNNVNINNFFIFHSMIKKQSIKEIKCHNC 208 >UniRef50_P23580 DNA-directed RNA polymerase subunit beta' n=2 Tax=Euglena RepID=RPOC1_EUGGR Length = 586 Score = 426 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 226/605 (37%), Positives = 328/605 (54%), Gaps = 56/605 (9%) Query: 18 DAIKIALASPDMIRSWSF---------GEVKKPETINYRTFKPERDGLFCARIFGPVKDY 68 D ++I +ASP + SW+ G + + +++ T KP GL C RIFG K Sbjct: 3 DYVRIKIASPQQVLSWTERSLPDGRLIGRLTNFDMLHFETKKPVFGGLLCERIFGSTKTN 62 Query: 69 ECLCGKYKRLKHRGV------ICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPS 122 +C CGKYK++ +G +C C VE+ RR RMG+I+L P H W+LKS P Sbjct: 63 QCFCGKYKKMFQKGYANNFVLVCANCFVEINNCNRRRFRMGYIDLVFPLIHTWYLKSRPC 122 Query: 123 RIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGA 182 + ++L +++I+++ + +SY+ I G GA Sbjct: 123 YLAIMLGKKVKNIKKMCFMDSYIKIRNND---------------------GQTVGILTGA 161 Query: 183 EAIQALLKSMDLEQECEQLRE---------ELNETNSETKRKKLTKRIKLLEAFVQSGNK 233 EAI + L +DLE E L + E N RKK RIKL+ AF+Q+ K Sbjct: 162 EAIYSRLSKIDLESLIEFLYKRLVGIEKLKEYNFEKYLWLRKKFINRIKLVNAFIQTNTK 221 Query: 234 PEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVR 293 P W+++ LPVLPPD+RP+V L G +DLN LY +I NN++ +L P+ + Sbjct: 222 PIWIMIHFLPVLPPDIRPVVKLQDGTVIMTDLNFLYIDIIYGNNKIIKLRKFLLPEEFML 281 Query: 294 NEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRS 353 NEKR LQ VDA ++N N + LKS+ + +KGK+GRFR+NLLGK VDYSGRS Sbjct: 282 NEKRSLQVKVDAFINNENISENPYEQNDKKLKSITEGLKGKKGRFRENLLGKTVDYSGRS 341 Query: 354 VITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILD 413 VI V P L LH+CG+P +ALELF P + L + I+ AK+ + V +L+ Sbjct: 342 VIVVEPKLLLHECGMPLDIALELFHPILIKMLIRFKFSVGIREAKRHIYNASNFVIPVLE 401 Query: 414 EVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLT 473 +V+ + +LLNRAPTLHRLGIQ+F+P + KAI LHPLVC+A+NADFDGDQM +H+PL+ Sbjct: 402 KVLNSYFILLNRAPTLHRLGIQSFQPKVTFEKAILLHPLVCSAFNADFDGDQMGIHIPLS 461 Query: 474 LEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDC---VNAKGEGMVLTGP 530 L++ EAR++++S NN + PANG P I+PSQD+VLG YY+T + + Sbjct: 462 LKSLAEARSMLISINNCVLPANGLPSILPSQDMVLGCYYVTLENCNLDFILTNLKIYANI 521 Query: 531 KEAERLYRSGLASLHARVK-VRITEYEKDANGEL-------VAKTSLKDTTVGRAILWMI 582 ++ + Y G + V + N ++ V K TT+GR + Sbjct: 522 EKVKSAYHKGEILIQTFVWLICQKFPNILKNSKIRIKKKRMVKKLVFFRTTIGRIFFDDM 581 Query: 583 VPKGL 587 + + L Sbjct: 582 IKEFL 586 >UniRef50_Q4D133 DNA-directed RNA polymerase n=4 Tax=Trypanosoma cruzi RepID=Q4D133_TRYCR Length = 1802 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 151/834 (18%), Positives = 256/834 (30%), Gaps = 149/834 (17%) Query: 119 SLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTN--LERQQILTEEQYLDALEEFGDEF 176 + S + + +F + N L + Q+ E+ + F Sbjct: 266 GVCSHCNGISPRITKRNGHFFFFFRKNSASVNVANALLTQTQLQEWEENNKLHKRTHTYF 325 Query: 177 DAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEW 236 + E ++ L + E L L E + Sbjct: 326 RNQDIREHLKQLCQRE------ELLLGMLFPHLGEPSVITPHTTPLPARDM------YKA 373 Query: 237 MILTVLPVLPPDLRPLV---PLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVR 293 + + V P LR DGG + V+ +++ L R Sbjct: 374 FFIDRILVPPLPLRISSGVQVQDGGAISPDPQTRALSSVLGFVEQIECYQVLQNNSTPDR 433 Query: 294 NEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRS 353 N QE + N R + + + K+G FR N++GKRV+ + RS Sbjct: 434 NLLSTAQE-----IANEINLRNLQVKVNEVYQEIMGTFAKKEGLFRMNMMGKRVNQACRS 488 Query: 354 VITVGPYLRLHQCGLPKKMALELFKPFIYGKL---ELRGLATTIKAAKKMVER------- 403 VI+ + ++ LP+ A L P + L + + Sbjct: 489 VISPDLMVEPNEVLLPRPFARNLSFPEQVTFYASARMNLLKRCVINGPRRYPGATHLEIR 548 Query: 404 -----------------------------EEAVVWDILDEVIREHPVLLNRAPTLHRLGI 434 + V + ++ V+ NR PTLH+ + Sbjct: 549 QTNGEIRFIELDVPEQTRRQHAARYFAMAQSGVTLIVYRHILDGDRVVFNRQPTLHKPSM 608 Query: 435 QAFEPVLIEG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSP 493 ++ ++ G K ++ H + ++NADFDGD+M +HVP +LEA++E LM + N L P Sbjct: 609 MGYQVKVLSGHKTLRFHYVNGNSFNADFDGDEMNIHVPQSLEAKVELDVLMDANLNYLVP 668 Query: 494 ANGEPIIVPSQDVVLGLYYMT-RDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVK-VR 551 +G+PI QD + +T RD + L A L + +L + Sbjct: 669 TSGKPIRGLIQDHIAAGVLLTLRDKFLEHATFVQLAYYGLAPYLRQQHEITLSELIPLPA 728 Query: 552 ITEYEKDANGELVAKTSLKDTT-VGRAILW------------------------------ 580 I G+ + ++ + VGR W Sbjct: 729 ILWPRPLWTGKQLISVVIRYVSGVGRRPDWMRINSGGASLRGVSLIHPGVYNHTIPGSDV 788 Query: 581 --------------MIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMY 626 M + L ++ + + + + + + G + Sbjct: 789 VQTVTRQTMDDDALMFMNSELLMGLMCKNQLGASSMSIAHIVHELYGPHKVGQLFGALGR 848 Query: 627 TGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIW 686 R G S+G+DDM + V E + Q + Y Sbjct: 849 ILSQSLQREGFSIGMDDMCL--------------VQEERRYRQLRQLDEAPLY------L 888 Query: 687 AAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGL 746 V +M+ G+ N + MM SGA+GS A Q+A G Sbjct: 889 PDDEAAVMTKIMEYATKLQQEFIPGRMMVPFPRNHLLMMTASGAKGSNANATQMALGLGQ 948 Query: 747 MAKPDGSIIE--------------------TPITANFREGLNVLQYFISTHGARKGLADT 786 + F G+ +Y I R GL DT Sbjct: 949 QLFDGRRVKRMNSGKTLPAFFAHERRARSFGYAIGRFTSGIRPPEYTIHAMAGRDGLIDT 1008 Query: 787 ALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVL 840 A+KT+ SG+L R L+ + LVV D + GGD +P + L Sbjct: 1009 AVKTSRSGHLQRCLIKGLESLVVHWDHSVRDSNGSIVQFTYGGDGLDPCKASTL 1062 Score = 66.4 bits (160), Expect = 8e-09, Method: Composition-based stats. Identities = 22/153 (14%), Positives = 46/153 (30%), Gaps = 40/153 (26%) Query: 1214 PEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD 1273 D+ GV + R + +E+ +++ ++ +H+ +I + T N + Sbjct: 1674 STDIRDMANWFGVESAYRTLYDELFKLFKRY--SVDHRHLTLIADAATHRGTWENFNFTG 1731 Query: 1274 FLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLT 1333 + + S + +F + R L Sbjct: 1732 VI--------------------------------------SQSASPLFQMTFASSKRWLH 1753 Query: 1334 EAAVAGKRDELRGLKENVIVGRLIPAGTGYAYH 1366 A G DEL+ + ++VG GT Sbjct: 1754 TAVSRGLSDELQSISSAIMVGERPKVGTACVKL 1786 Score = 63.7 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 28/56 (50%) Query: 902 DLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGS 957 + GE +G++AAQ+ GEP TQ+T+ TFH G+ E +++ Sbjct: 1234 SRRVKAFCDPGEPVGLLAAQAAGEPSTQMTLNTFHSAGSTVTHVTEGIPRLRELLI 1289 >UniRef50_Q196X0 Probable DNA-directed RNA polymerase II subunit RPB1 homolog n=1 Tax=Invertebrate iridescent virus 3 RepID=RPB1_IIV3 Length = 1377 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 173/1093 (15%), Positives = 358/1093 (32%), Gaps = 199/1093 (18%) Query: 383 GKLELRGLATTIKAAKKMVEREEAVVWDIL--------DEVIREHPVLLNRAPTLHRLGI 434 K L+ T I+ K + E I +++ VLLNR PTLH+ + Sbjct: 408 TKFVLQPGDTIIRNGKALKEIRYPERKQIELEVGDVIKRQLMDGDYVLLNRQPTLHKASM 467 Query: 435 QAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPA 494 AF+ V+ K ++++ + +N DFDGD+M +HVP + EA E + L ++ I+S Sbjct: 468 MAFKVVIKPVKTLKINLAITKPFNCDFDGDEMNIHVPQSYEAIAELKELSCASKCIMSVQ 527 Query: 495 NGEPIIVPSQDVVLGLYYMTRDCVNA----KGEGMVLTGPKEAERLYRSGLASLHARVKV 550 NG+P + QD ++GL++++RD + + L + + + + + + +K Sbjct: 528 NGKPNVAIVQDSLIGLWFLSRDQWFCQTLKRSQFFNLLLTIDKAQNFLTRMDQICHVLKS 587 Query: 551 RITEYEKDANGELVAKTSLKDTTVGRAILW------MIVPKGLPYS-----------IVN 593 + + G + VGR + + P Y + Sbjct: 588 KFPSKG-NWEGSGLDGDGRVSPKVGRMVFNGRGLLSFLFPYDFDYCGGDGLSIESGVFLE 646 Query: 594 QALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEI 653 L K ++ ++ Y+ G F D I + Y G ++ D + E Sbjct: 647 GTLEKNVVNTLIKYIYKDYGETVVADFVDNIQFLTNHYLVDRGFTINASDCLKNESIAPE 706 Query: 654 ISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQE 713 I + + + K + I + D+ K + L ++ Sbjct: 707 IVSLTRATFSKATTVRDVTINPFIQEQKTLAILNSCTDQCMKLSKECLSSD--------- 757 Query: 714 EKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSII------------ETPITA 761 N+ + +SG++GS I Q+ + G + I Sbjct: 758 ------NNFCVTTESGSKGSIFNICQITSLLGQQTIDGKRVYGLLHPQDNEFQDRGFIAN 811 Query: 762 NFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIM 821 +F EGL+ ++ RKG+ DTAL T+ SGY R+ V + +D+ + D Sbjct: 812 SFVEGLSPREFLHHAMAGRKGVIDTALLTSVSGYGQRQGVKLNEDIKIYPDYTVRDVNGR 871 Query: 822 MTPVIEGGDVKEPLRD-------------RVLGRVTAEDVLK---PGTADILVP------ 859 + I G +P + R++ R+ P T D + Sbjct: 872 LYQYIFGEAGYDPSQTIVVDGHQTICNVYRLVNRLNRSYDSSALRPLTEDEIEWMVDFIQ 931 Query: 860 ---RNTLLHEQWCDLLEENSVDAVKVR-SVVSCDTDFGVCAHCYGRDLARGHIINKGEAI 915 + + D + + + + +++ GE + Sbjct: 932 PRREYEYIPPDVEQRICSIRRDPIVGQLRRIQTVDALVPILKSHLEKCFYQTLMSPGECV 991 Query: 916 GVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVI 975 G+I AQS+GE TQ T+ TFH+ G+ + A + + + + N K++ K+ Sbjct: 992 GIIGAQSMGEFSTQATLNTFHVAGSTTTGAVTNCLTRFQEINNATKNPKNITC---KVYF 1048 Query: 976 TSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFV 1035 T N ++ I G+ + + Sbjct: 1049 TKGNGTIEEIRRRGKDVK----------------------------------------HI 1068 Query: 1036 RFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDM 1095 F D+++ T+ + T P + D+ Sbjct: 1069 VFRDVVEKWTV-----------EPATAEWWYATFKQLYAAPIAESGTVTKRVRFHLKRDI 1117 Query: 1096 PAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGL-PRVADLFEARRPKEPA 1154 Y + + I Q + + P + G D+ G + P + F A P Sbjct: 1118 VFAYRISPQEIKQSLESKF---DVSCIFSPFDEGLILDVFGKIEPHKLEAFVALML--PT 1172 Query: 1155 ILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGP 1214 ++ + GI + + ++ + + + ++ ++ Sbjct: 1173 YISGLEGIKAISYHKCDELKIWYIQT----------SGGTLSDFYTLDDIDVEHTTTN-- 1220 Query: 1215 EAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDF 1274 DI G+ A + + E+ ++ G ++ HI++ ++ Sbjct: 1221 -NIWDIYHTLGIEAAREFRIKELVEII---GTGVDLSHIKLRADRLT------------- 1263 Query: 1275 LEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTE 1334 ++ + +T+ ++ E S F+E + Sbjct: 1264 ---------------------------FTGTIQSLTRYTMRGEKPFSKVGFEEIMENFYK 1296 Query: 1335 AAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQVTAEDASASLA 1394 A + D+L G+ +++ G+ GT + + + + T + +++ Sbjct: 1297 TARDAEVDDLTGVSASIMCGKRAKVGTSMFDIKLNLDAILCPPSTSPLLTTEDGTTSATT 1356 Query: 1395 ELLNAGLGGSDNE 1407 + D+E Sbjct: 1357 PIAATTPEQEDDE 1369 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 82/424 (19%), Positives = 147/424 (34%), Gaps = 60/424 (14%) Query: 11 QTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYEC 70 Q + + I + SP+ I S +V + + E Sbjct: 4 QPEIADIAKISFGVLSPEEILKMSCCKVTSVKVSDK---------------------GEN 42 Query: 71 LCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDM 130 + K+ G C+ C +V + GH L P + F+ +L Sbjct: 43 IYSKFMGTIENGENCKTCDRDVWECP---GHFGHFHLEVPVVNPIFINDAC----NILRC 95 Query: 131 PLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLK 190 + + + ++ +E + + + + E+ + L Sbjct: 96 ICFNCYKFIVSVDHLKLENLVRRFQ------------DILLYVKNIKHCYNCESEKLPLS 143 Query: 191 SMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLR 250 ++ E ++ + L+ + + F + + P+ I TV P+LPP R Sbjct: 144 VVN-EIIVDEDKNPLDTRKLLRVLENVDDETVRFLGFNPTMSHPKNFIFTVFPILPPCCR 202 Query: 251 PLVPLDGGRFATSDLNDLYRRVINRNNRL-------------KRLLDLAAPDIIVRNEKR 297 P V + DL +I N L K LL + P +K Sbjct: 203 PYVMSEEN-CCDDDLTYQLIEIIKNNQYLGDEFLKKAELKRKKSLLQSSLPPTTDIKQKH 261 Query: 298 M--LQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVI 355 + L + +N ++ +A + +P+ L + I GK+G+ R NLLGKR D SGR+V+ Sbjct: 262 LTNLWFRISTYFNNSKK-KAKHAATAKPITGLKERIAGKEGQIRHNLLGKRCDQSGRTVV 320 Query: 356 TVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI--KAAKKMVEREEAVVWDILD 413 P LRL++ +PK+MA L P L + A +++ L Sbjct: 321 GPDPTLRLNELCVPKEMAEILTIPVHVTPFNRDALTQLVNSNKANFLIKAANPKRSINLK 380 Query: 414 EVIR 417 VI Sbjct: 381 NVIN 384 >UniRef50_Q110H3 DNA-directed RNA polymerase subunit beta' n=5 Tax=Cyanobacteria RepID=RPOC2_TRIEI Length = 1415 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 200/600 (33%), Positives = 313/600 (52%), Gaps = 68/600 (11%) Query: 589 YSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPE 648 N+ + K + K+++ + G T A+++ GF YA ++G S+ +DD+ +P Sbjct: 1 MIFYNRVINKGQLKKLISWSFNNYGTAITAQMANKLKDLGFRYATKAGVSISVDDLQVPP 60 Query: 649 KKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVIN 708 K +++ EAE E+ E++ G +T ER+ KVID W + ++ + ++ N ++ Sbjct: 61 SKRQLLDEAEQEIRNTTERYTKGKITEVERFQKVIDTWNSTSENLKNEVVRNFRST---- 116 Query: 709 RDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLN 768 NS+YMMA SGARG+ +Q+RQL GMRGLMA P G II+ PI NFREGL Sbjct: 117 --------DPLNSVYMMAFSGARGNISQVRQLVGMRGLMADPQGEIIDLPIKTNFREGLT 168 Query: 769 VLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEG 828 V +Y IS++GARKGL DTAL+TA+SGYLTRRLVDV+QD++V E DCGT G+M+T + +G Sbjct: 169 VTEYIISSYGARKGLVDTALRTADSGYLTRRLVDVSQDVIVREADCGTKRGVMVTSMKDG 228 Query: 829 GDVKEPLRDRVLGRVTAEDVLKPGTADIL------VPRNTLLHEQWCDLLEENSVDAVKV 882 V P++DR+LGRV A+DV P T +I+ +N +L E + + V+ V V Sbjct: 229 DRVLIPVKDRLLGRVLADDVKDPKTGEIVTQGHIQAVKNQVLTEDLAKAIGKAGVENVFV 288 Query: 883 RSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAAS 942 RS ++C++ VC CYG LA GH+++ GEAIG+IAAQSIGEPGTQLTMRTFH GG + Sbjct: 289 RSPLTCESPRSVCQTCYGWSLAHGHMVDMGEAIGIIAAQSIGEPGTQLTMRTFHTGGVFT 348 Query: 943 RAAAESSIQVKNKGSIKLS---NVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPY 999 A G +K +S G + + N +I KE+ + Sbjct: 349 GEVARQ-FVASFGGVVKYPSNVRTRSFRTRHGDEAMIAENNFDMIILGVDGRKETIPIAQ 407 Query: 1000 GAVLAKGDGEQVAGGETVANW----------DPHTMPVITEVSGFVRFTDMIDGQTITRQ 1049 G++L + +QV+ G +A + T V ++++G ++F ++ + + +Q Sbjct: 408 GSILMVQNNQQVSAGIVLAEVPKVGQVRKTTEKVTKEVASDLAGELKFAQLVQEEKVDKQ 467 Query: 1050 TDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQL 1109 +I G ++ G Y LP A + Sbjct: 468 G-------------------------TTTRIAQRGGLIWILEG----EVYNLPPGAEAMV 498 Query: 1110 EDGVQISSGDTLARIPQESGGTKDITGGLPRVAD--LFEARRPKEPAILAEISGIVSFGK 1167 ++G +I+ LA + GG+ R++ L+ + E +LA+ + + + Sbjct: 499 KNGTRININSVLAETKLVTEH-----GGVIRISSSPLYSPEKQNETNVLAQATQESTIDE 553 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 138/399 (34%), Positives = 193/399 (48%), Gaps = 30/399 (7%) Query: 1000 GAVLAKGDGEQVAGG-----ETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELT 1054 L DG+ + G + + + I E S +R ++ + + Sbjct: 890 STRLLVKDGDVIEAGGVVSRTQILSKKSGEVRGIREGSEAIRRILIVREADLVKIPVNTL 949 Query: 1055 GLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGT-------DMPAQYFLPGKAIV 1107 L A + P +V VL G+ Y + A++ Sbjct: 950 PSVVEGDLLVAGTEIAPGIVIPRSGLVSKVEETVLNDGSKGYQVILRKGRPYRVSTGAVL 1009 Query: 1108 QLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGK 1167 DG + GD L + E T DI GLPR+ +L EAR+PKE IL + G Sbjct: 1010 LTMDGDLVQRGDILVLLVFERTKTGDIIQGLPRIEELLEARKPKESCILVKYPGQAQVNV 1069 Query: 1168 ETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRL---- 1223 V++ + + + + V +G+ V G+ ++DGP+ PH+IL Sbjct: 1070 NDDNVEVSVVSSD--GTITDYPLGHGQNVIVADGQNVNVGEALTDGPQNPHEILETFFNY 1127 Query: 1224 ------------RGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGS 1271 R A R++VN+VQ VY+ QG+ I+DKHIEVIVRQM K I + G Sbjct: 1128 YREHESAYEACLRSFEACQRFLVNQVQAVYQSQGIDISDKHIEVIVRQMTAKVRIDDGGD 1187 Query: 1272 SDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRV 1331 + L GE +E +V+ N + G A Y+ LLGITKASL T+SFISAASFQETTRV Sbjct: 1188 TTMLPGELIELRQVEQVNEAMSITGGATAQYTPMLLGITKASLNTDSFISAASFQETTRV 1247 Query: 1332 LTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRM 1370 LTEAA+ GK D LRGLKENVI+GRLIPAGTG+ ++D + Sbjct: 1248 LTEAAIEGKSDWLRGLKENVIIGRLIPAGTGFNAYEDAL 1286 >UniRef50_P49467 DNA-directed RNA polymerase subunit beta' n=4 Tax=Bacillariophyta RepID=RPOC1_ODOSI Length = 843 Score = 416 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 214/445 (48%), Positives = 295/445 (66%), Gaps = 7/445 (1%) Query: 127 LLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEE-QYLDALEEFGDEFDAKMGAEAI 185 L P ++ Y ++ T L ++ +E + LD ++E + Sbjct: 355 LKPEPKPKLQNRRYNTPKYLLRMTPTYLIGAVLIKKELEDLDIIKEIQRTRKFIVIC--- 411 Query: 186 QALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVL 245 +L + + + R + KRI++LE + +G+ P WMILT+LPV+ Sbjct: 412 SKILHKEKPIYHFLRWFRKWELQRAYKLRDQAIKRIRILENLLATGSNPAWMILTILPVI 471 Query: 246 PPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDA 305 PP LRP++ L+GGRFATSDLN+LYRR+I RNNRL RLL++ AP +I+RNEKRMLQEAVD Sbjct: 472 PPALRPMIQLEGGRFATSDLNELYRRIITRNNRLLRLLEIDAPQLIIRNEKRMLQEAVDT 531 Query: 306 LLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQ 365 L+DNG+RG+ +N RPLKSL+D+IKGK GRFRQNLLGKRVDYSGRSVI VGP LRL++ Sbjct: 532 LIDNGKRGKIALSANNRPLKSLSDIIKGKHGRFRQNLLGKRVDYSGRSVIVVGPSLRLNE 591 Query: 366 CGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNR 425 CGLP +MALELF+PF+ ++ +GLA+ +K A+ ++E+ EA++ +L++V+ HP+ LNR Sbjct: 592 CGLPYEMALELFQPFLIREMINQGLASNMKIARNLIEQNEAIIDPVLEKVLSNHPIFLNR 651 Query: 426 APTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMM 485 APTLHRLGIQAFEP+L++G+AI+LHPLVC+A+NADFDGDQMAVH+PL+LE+Q E LM+ Sbjct: 652 APTLHRLGIQAFEPILVQGRAIKLHPLVCSAFNADFDGDQMAVHIPLSLESQSECYMLML 711 Query: 486 STNNILSPANGEPIIVPSQDVVLGLYYMTRDC-VNAKGEGMVLTGPKEAERLYRSGLASL 544 + N LSPANGEPII+PSQD+VLG YY+T G ++ Y L Sbjct: 712 APYNFLSPANGEPIILPSQDMVLGCYYLTVSNIKGLLGSNQYFASLEDVLLAYNQDKIEL 771 Query: 545 HARVKVRITEY--EKDANGELVAKT 567 H + +R T+ E + + Sbjct: 772 HTAIWIRYTDNYIEPLNFKKQIQLN 796 Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats. Identities = 84/241 (34%), Positives = 127/241 (52%), Gaps = 15/241 (6%) Query: 15 EEFDAIKIALASPDMIRSWS---------FGEVKKPETINYRTFKPERDGLFCARIFGPV 65 +EFD I I LASP I WS GEV+K ETINYRTFKPE DGLFC RIFGP Sbjct: 6 KEFDYINIKLASPLRILQWSYRRLPNGQFIGEVQKSETINYRTFKPEMDGLFCERIFGPS 65 Query: 66 KDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIG 125 + +EC CGKYK +++ G+ICE+CGVE+T+++VRR RMGHI L P AH+W+ S P+ + Sbjct: 66 RSFECACGKYKLIRYEGLICERCGVELTESRVRRHRMGHINLIYPVAHVWYTNSRPNYMA 125 Query: 126 LLLDMPLRDIERVLYFESYVVIE---GGMTNLERQQILTEEQYLDALEEFGDEFDAKMGA 182 LLL+ + E+ L ++ G + R +L++ +++E+ Sbjct: 126 LLLE--VEQCEKNLNTSWQILRFSLPGIYDQVLRPILLSDHWPDSSIDEYLKTICKDFST 183 Query: 183 EAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPE-WMILTV 241 A+++ + Q E+ + K + + + I+ ++ + I Sbjct: 184 IALESSNIWAKKSKAWYQKIFEIYQELLYAKIETIYQFIEFIDNIDLTKQPTSVNFIFDY 243 Query: 242 L 242 L Sbjct: 244 L 244 >UniRef50_B5VU95 DNA-directed RNA polymerase n=3 Tax=Cyanobacteria RepID=B5VU95_SPIMA Length = 1361 Score = 415 bits (1066), Expect = e-114, Method: Composition-based stats. Identities = 226/781 (28%), Positives = 352/781 (45%), Gaps = 92/781 (11%) Query: 591 IVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKK 650 N+ + K + K++ + G T AD++ GF YA R+G S+ +DD+ IP+ K Sbjct: 8 FRNRVIDKGQLKKLMTWAFMNHGSAVTAQVADELKDLGFKYATRAGVSISVDDLQIPQSK 67 Query: 651 HEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRD 710 +++ +AE E+ + ++ G +T ER+ KVID W ++ + ++ N ++ Sbjct: 68 KDLLEDAEEEIRRTERRYTKGEITEVERFQKVIDTWNGTSEALKDEVVRNFRSTN----- 122 Query: 711 GQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVL 770 NS+YMMA SGARG+ +Q+RQL GMRGLMA P G II+ PI NFREGL V Sbjct: 123 -------PLNSVYMMAFSGARGNISQVRQLVGMRGLMADPQGEIIDQPIKTNFREGLTVT 175 Query: 771 QYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGD 830 +Y IS++GARKGL DTAL+TA+SGYLTRRLVDV+QD+++ E DCGT GI + + +G Sbjct: 176 EYIISSYGARKGLVDTALRTADSGYLTRRLVDVSQDVILREIDCGTERGITLGDMTDGDR 235 Query: 831 VKEPLRDRVLGRVTAEDVLKPGTADIL------VPRNTLLHEQWCDLLEENSVDAVKVRS 884 + PL+DR++GRV EDV P T +I+ RN ++ + + V V VRS Sbjct: 236 ILIPLKDRLMGRVLGEDVKNPETGEIISFGEIRAVRNQVVCDDLASAICNAGVKKVFVRS 295 Query: 885 VVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRA 944 ++C+ + VC HCYG LA +++ GEAIG+IAAQSIGEPGTQLTMRTFH GG + Sbjct: 296 PLTCEANRSVCRHCYGWSLAHAEMVDLGEAIGIIAAQSIGEPGTQLTMRTFHTGGVFTAE 355 Query: 945 AAESSIQVKNKGSIKLS---NVKSVVNSSGKLVITSR-NTELKLIDEFGRTKESYKVPYG 1000 AA ++ G++K +++ G + N L + + G + G Sbjct: 356 AA-GFLRAPFDGTVKFPKTLRLRAFRTRHGDDSFLAESNGYLTVEGKDGNK--RINISQG 412 Query: 1001 AVLAKGDGEQVAGGETVANW-----------DPHTMPVITEVSGFVRFTDMIDGQTITRQ 1049 + + DG+ V + + + T V T+++G V+F D++ + + RQ Sbjct: 413 STVVVHDGQAVNADQVLVEIMAGGRTARKTTEKATKDVATDLAGEVKFADVVPEEKLDRQ 472 Query: 1050 TDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPG-KAIVQ 1108 + +L AG P + D + PG+ + IV+ Sbjct: 473 GNMTRIAQRGGLL---WVLAGEVYNLPPGAEPVVKNGDRVEPGSVLAQTKLQTEHGGIVR 529 Query: 1109 LEDGVQISSGDTLARIPQESGGTKDITGG------LPRVADLFEA--------------- 1147 + D I A + E+ IT LPR ++ A Sbjct: 530 ITDDNDIDP----ATVATETLADGMITTSSGEENALPREIEIITASVLLDQALVRLQSEL 585 Query: 1148 -RRPKEPAILAEISGIVSFGKETKGKRRLVITP--------VDGSDPYEEMIPKWRQLNV 1198 R + + +K + VI G + ++ Sbjct: 586 GREQYVIETNSNHRFSLKVTPGSKVENHEVIAELMDDSYRTTTGGIIKYAGVEVAKRSKG 645 Query: 1199 FEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVR 1258 +G V G + PE H++ + ++ IV + Q V EV+ Sbjct: 646 KQGYEVTSGGTLLWIPEECHEVNK-----DISLLIVEDGQYVEAG---------TEVVKD 691 Query: 1259 Q-MLRKATIVNAGSSDFLEGEQV---EYSRVKIANRELEANGKVGATYSRDLLGITKASL 1314 K I +D L V E V + +G++ + G+T L Sbjct: 692 IFCQSKGVIEVTQKNDILREIVVKPGELHLVDDPEMVMAIDGQIKNAGEEVIPGVTATEL 751 Query: 1315 A 1315 Sbjct: 752 N 752 Score = 308 bits (789), Expect = 9e-82, Method: Composition-based stats. Identities = 150/447 (33%), Positives = 212/447 (47%), Gaps = 40/447 (8%) Query: 983 KLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMID 1042 L+ +S + L DG+++ G V + V G +++ Sbjct: 856 SLVIRRDIIADSTQGSTRTRLLVHDGQEIEPGAVVTRTEILGKDG-GVVGGIRSGAEILR 914 Query: 1043 GQTITRQTDELTGLSSLVV---LDSAERTAGGKDLRPALKIVDAQGNDVLI--------P 1091 I R TD +T V + + ++ P +K+ G V I Sbjct: 915 RCLIVRDTDMMTIQLPDGVTPTVKVGQLVVEDSEIAPGVKLS-QSGQVVAINQDDSETSI 973 Query: 1092 GTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPK 1151 + Y + A++ L DG + GD L + E T DI GLPR+ +L EAR+PK Sbjct: 974 VLRIGRPYRVSSGAVLHLSDGDLVQRGDNLVLLVFERPKTGDIIQGLPRIEELLEARKPK 1033 Query: 1152 EPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVIS 1211 E ILA+ G + VI G E + + + V +G+ V+ G ++ Sbjct: 1034 EACILAKQPGTAQLEVFDDLVQLRVIES--GGAATEYPLTPGQTVIVSDGQTVDVGQPLT 1091 Query: 1212 DGPEAPHDILRL-----------------RGVHAVTRYIVNEVQDVYRLQGVKINDKHIE 1254 DGP PH+IL + + ++VNEVQ VY+ QG+ I+DKHIE Sbjct: 1092 DGPANPHEILEVFFNYYLEQDGMVYEAALKSFQKCQIFLVNEVQSVYQSQGIDISDKHIE 1151 Query: 1255 VIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASL 1314 VIVRQM K I + G + L GE E +V+ N + G A Y+ LLGITKASL Sbjct: 1152 VIVRQMTSKVRIDDGGDTTTLPGELTELRQVEQVNEAMFITGGAPARYTPVLLGITKASL 1211 Query: 1315 ATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRA 1374 T+SFISAASFQETTRVLTEAA+ GK D LRGLKENVI+GRLIPAG+G+ ++D + Sbjct: 1212 NTDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLIPAGSGFNAYEDPVL--- 1268 Query: 1375 AGEAPAAPQVTAEDASASLAELLNAGL 1401 A V E+ + L + +N Sbjct: 1269 -----AEESVMDEEPYSYLEDDVNNDD 1290 >UniRef50_Q9MUS7 DNA-directed RNA polymerase subunit beta'' n=2 Tax=Eukaryota RepID=RPOC2_MESVI Length = 1223 Score = 413 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 200/735 (27%), Positives = 334/735 (45%), Gaps = 68/735 (9%) Query: 574 VGRAILWMIVP-KGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYA 632 + + + N+ + K I +++ G T D++ GF +A Sbjct: 4 MKKIFFNQKSDLNSMKLFFCNRIMNKGEIRRIIAWFLFNHGTSRTAHMVDRLKILGFYHA 63 Query: 633 ARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDR 692 ++G S+ IDD+ IP K ++ +AE E+A+ Q+ + G +TA ER+ KVID W + ++ Sbjct: 64 TKAGISLSIDDLSIPPTKKWLLEDAEQEIAKTQKNYSIGKITAVERFQKVIDTWHSTSET 123 Query: 693 VSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDG 752 + ++ + N +YMMA SGARG+ +Q+ QL GMRGLM+ P G Sbjct: 124 LKNEVVQYFEQTN------------PLNPVYMMAFSGARGNLSQVSQLVGMRGLMSDPQG 171 Query: 753 SIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTED 812 II+ PI +NFREGL V +Y IS +GARKGL DTAL+TA+SGYLTRRLVDVAQD+++ E Sbjct: 172 QIIDLPIRSNFREGLTVTEYVISCYGARKGLVDTALRTADSGYLTRRLVDVAQDMIIRET 231 Query: 813 DCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLL 872 DCGT GI++ PV + V L++R++GRV AE++ P + +N + D + Sbjct: 232 DCGTKSGILLGPVKDEQKVVFSLQERLIGRVLAENIYSPKQKQYIAKKNQDISASLSDKI 291 Query: 873 EENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTM 932 E + VRS ++C + VC CYG LA G++++ GEA+G+IAAQSIGEPGTQLTM Sbjct: 292 CEIKRTNILVRSPLTCKSIRSVCQLCYGWSLAHGNLVDLGEAVGIIAAQSIGEPGTQLTM 351 Query: 933 RTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSV--VNSSGKLVITSRNTELKLIDEFGR 990 RTFH GG + A+ I+ G I S ++ G++ + +++ + + + Sbjct: 352 RTFHTGGVFTGNIAKQ-IRSSIDGKIIYSLTNTIPMRTRHGEIALITQSN-INICIQGKN 409 Query: 991 TKESYKVPYGAVLAKGDGEQVAGGETVAN---------WDPHTMPVITEVSGFVRFTDMI 1041 + + +VP +L +G V + +A + + V ++ SG + F +++ Sbjct: 410 KEFNIEVPINTILLVNNGSMVRAKQLIAEVSAPVNAQSVEIASKYVASDFSGEIHFENLL 469 Query: 1042 DGQTITRQTDE-------------LTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDV 1088 + + + L+G LD + + + Sbjct: 470 LQEKKSAYGHKMNRAGQYGGLLWILSGQVYKFSLDVPLMFDTADYIHNGSCMAEHNIISQ 529 Query: 1089 L--IPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGG----TKDITGGLPRVA 1142 I T + + + + L+ I T D+ Sbjct: 530 YGGILQTSENNLTIDNSNSYLYVLNSSMTIINAYLSHIKNARSEAYILTDDLNQKF--FM 587 Query: 1143 DLFEARRPKEPAILAEI---------SGIVSFGKETKGKRRLVITPVD----------GS 1183 + K I+A+ GI+ + E + ++T Sbjct: 588 QVESNNVIKNNQIIAKFVTKTYLTNTGGILKYSSEIEVDEYDIVTQSYPVRKGGIIMWIP 647 Query: 1184 DPYEEMIPKWRQLNVFEGERVERG-DVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYR 1242 + + L V + E VE G +I D + ++ + + R +V + +YR Sbjct: 648 EETHLINKDASLLMVRDCEYVEAGTQIIKDLICHSSGLAQVSQTNDILREVVIKPGKIYR 707 Query: 1243 -LQGVKINDKHIEVI 1256 + ++ DKH +I Sbjct: 708 PIDFSQVLDKHQTLI 722 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 117/377 (31%), Positives = 159/377 (42%), Gaps = 49/377 (12%) Query: 1001 AVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLV 1060 L + + G +A + F + + + + Sbjct: 857 TRLVRKFNNYIIPGTILAKTEIIAKDHGEVRQSNKNFEEQKSFLIMNEHDQMTLFVKNAY 916 Query: 1061 VLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQ----YFLPGKAIVQLEDGVQIS 1116 + G + + + + Y + +A++ ++DG + Sbjct: 917 EFFQLGDLVHKGKEIVPGILAPQSGQVIQLQANRVTLRLARPYLVSSEAVLYVDDGDFVK 976 Query: 1117 SGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLV 1176 SGDTL + E T DI GLPR+ +L EARR K L + Sbjct: 977 SGDTLVMLIFEQSKTGDIVQGLPRIEELLEARRTKGLKPL-------------PNNLHDL 1023 Query: 1177 ITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNE 1236 + + I K + + ++VNE Sbjct: 1024 LQSFFDEATEKYGIQK----------------------------AAKKSFEKLQLFLVNE 1055 Query: 1237 VQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANG 1296 VQ VY+ QGV I+DKHIEVIVRQM K I G + L GE +E R++ NR + Sbjct: 1056 VQSVYKAQGVHISDKHIEVIVRQMTSKVMIEEGGDTTLLPGELIELHRIENMNRNVS--- 1112 Query: 1297 KVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRL 1356 V A Y +LGITKASL TESFISAASFQETTRVLT+AA+ GK D LRGLKENVI+GRL Sbjct: 1113 -VHAKYKPIVLGITKASLNTESFISAASFQETTRVLTKAAIEGKTDWLRGLKENVIIGRL 1171 Query: 1357 IPAGTGYAYHQDRMRRR 1373 IPAGTG+ H R Sbjct: 1172 IPAGTGFNVHDKMYSRD 1188 >UniRef50_A9SIX8 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SIX8_PHYPA Length = 2458 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 190/1172 (16%), Positives = 355/1172 (30%), Gaps = 149/1172 (12%) Query: 194 LEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRP-- 251 E E L+ + + KK++ +PE +I+ +P+ P R Sbjct: 552 PENEEVPKSHVLSPLEALSILKKISDTAIGKLGMNGLVARPEGLIMKCVPIPPNCTRTTD 611 Query: 252 ---LVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLD 308 + RF T + + ++N R++R R+E ++LQ L Sbjct: 612 YKYVSNTTAVRFGTDRVTRTLQNLVNEIGRIQRTRTGKIMKRGQRDEVKVLQVLTAEYLR 671 Query: 309 NGR-----RGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRL 363 G+ ++ + D + + QN LGK +Y+ R+V+ P L + Sbjct: 672 EKGAPKAVPGKEPLKKDRNGRFTKQDDHRWTKDWISQNYLGKGGNYTARAVVAGDPSLAI 731 Query: 364 HQCGLPKKMALELFKPFIYGKLELRGLATTI-----------KAAKKMVEREEA------ 406 G+P ++A +L P K L + K + R E Sbjct: 732 ETIGVPLEIAQKLTVPERATKWNRSKLQEYVDRTQMLQQGSGKPGATRIVRNEEAFQVWA 791 Query: 407 ------VVWDIL-DEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNA 459 + D++ + V +NR P++H+ + A + + G + ++PLVC +NA Sbjct: 792 NSTHTVQIGDVIHRNIQDGDFVYVNRPPSVHKHSLMALKVQVHYGLVLTINPLVCPPFNA 851 Query: 460 DFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVN 519 DFDGD V +P +L+A E LM I+S G+P++ +QD +L Y +T + Sbjct: 852 DFDGDIFHVFIPQSLQAIAELEHLMAVPQQIISDHGGQPLLGLTQDTLLAAYLLTSSKLL 911 Query: 520 AKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLK-DTTVGRAI 578 GM + A + V+ + GE + +L D VG Sbjct: 912 VDKAGMDQLC-------LWALKQPPDAAI-VKSPKGGPFWTGEQIFGLTLPTDLQVGAPH 963 Query: 579 LWMIVPKGLPYSIVNQA-LGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGA 637 + + G N A +K + LG V + + A+ G Sbjct: 964 EEVFIEGGEVIRWSNGAKSLRKDSEGIAAALCVQLGPVALVNYLNTATGLLHAWLQMHGF 1023 Query: 638 SVGIDDMVIPEKKHE-------IISEAEAE-VAEIQEQFQSGLVTAGERYNKVI---DIW 686 S G+ D + + I + + + E + + +VI D Sbjct: 1024 STGLADFQVTSNSADRQKMLKSIFEDYYQKSIQESCDSVRILDAKVQAMGQEVISSPDHL 1083 Query: 687 AAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGL 746 + + +A + + N + MM SG++GS ++ Q GL Sbjct: 1084 TRNINFLEQAAQQTFRNRESEVESIVMKYAARDNGLLMMVRSGSKGSRGKLLQQIAGMGL 1143 Query: 747 MAKPDGSII---------------------ETPITANFREGLNVLQYFISTHGARKGLAD 785 ++ + + ++ +GLN + F R + Sbjct: 1144 QLYKGQHLLPFSGSRRSSMSNSSELDWWEDKGLVRSSLVDGLNPSELFNHVIADRTVILR 1203 Query: 786 TALKTANSGYLTRRLVDVAQDLVVTEDDCGTHE-GIMMTPVIEGGDVKEPLRDRVLGRVT 844 ++ G L + L+ +DL V D ++ G + GG + R R++ Sbjct: 1204 KHVEVVQPGTLFKSLMLFLRDLHVMYDGSVRNQCGKNIVQFCYGGAIGVLKRSIPKERLS 1263 Query: 845 AEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLA 904 A +V ++W + Sbjct: 1264 RSQFEVVNPATPIVTWEEDDLKRWPLSILA------------------------------ 1293 Query: 905 RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVK 964 GE +GV+AA +I +P +L + + G + K + SN+ Sbjct: 1294 -------GEPVGVLAATAISQPAYELMLDAPCLNGPFKPR--PLELVQPFKALLTFSNLA 1344 Query: 965 SVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHT 1024 + +I VLA + + +A Sbjct: 1345 QETLYPRAKSVLKPIDRTAIIRLVNCPCTQPLCLERRVLAVQAHLKKISLKAIAES---- 1400 Query: 1025 MPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQ 1084 E F R G L + + + + L+ Sbjct: 1401 --CAVEFWNMENFEVAGPSGEALRMGSPWLGHIKLSLNLMKQLQVDVELMVERLRQRF-S 1457 Query: 1085 GNDVLIPGTDMPAQYF-------LPGKAIVQLED----------GVQISSGDTLARIPQE 1127 G M +F + + +I + LA + + Sbjct: 1458 GIIKNPKKHPMGQIFFCVSYNCGISNGLCLHFSPKLPNKMQNQRNDEIYNTALLALLLKI 1517 Query: 1128 SG----GTKDIT-GGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDG 1182 G G D T G R+ + ++P+ G+ + + V+ Sbjct: 1518 RGTIISGLLDCTVKGDERIESVI--IVSEDPSRTTWHRGLTCNQELEEELVLEVVVSPTK 1575 Query: 1183 SDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYR 1242 S W + + D P + +I GV A + I + V Sbjct: 1576 SKSKR--GDAWASVKQACLPLMHMVDWNRSMPYSIQEIRHALGVEASYQMISQRLGLVLD 1633 Query: 1243 LQGVKINDKHIEVIVRQMLRKATIVNAGSSDF 1274 H++++ M S F Sbjct: 1634 KTAPHTRSVHVKLVADMMTFSGDANGFNFSGF 1665 Score = 75.7 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 39/119 (32%), Gaps = 26/119 (21%) Query: 10 AQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYE 69 +Q T + ++I LA+ I S E + +T+ L R+ P +D Sbjct: 234 SQAPTADLVGLQIGLATTSEILGHSVIESRSKDTLI---------SLVDPRLGLPAEDER 284 Query: 70 CLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLL 128 C CG T H++L P H +++ + + + Sbjct: 285 ---------------CATCGG--TNYDECTGHFAHVKLTQPIFHPNYIRCVQRVLQKIC 326 >UniRef50_D1J3G9 DNA-directed RNA polymerase (Fragment) n=2 Tax=Vitis vinifera RepID=D1J3G9_VITVI Length = 1890 Score = 408 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 166/1098 (15%), Positives = 340/1098 (30%), Gaps = 169/1098 (15%) Query: 5 LKFLKAQTKTEEFDAIKIALASPDMIRSWSF--GEVKKPETINYRTFKPERDGLFCARIF 62 ++ + E I+ LA+ I S + L + Sbjct: 1 MEEDSSTILDGEISGIRFGLATRQEICIASVSDCPISHASQ------------LTNPFLG 48 Query: 63 GPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFL----- 117 P++ + CE CG + G+IEL P H + Sbjct: 49 LPLEFGK---------------CESCGT--AEPGQCEGHFGYIELPIPIYHPGHVSELKR 91 Query: 118 -------------KSLPSRI-----------GLLLDMPLRDIERVLYF------ESYVVI 147 KS S + L D+ ++ F ++ Sbjct: 92 MLSLLCLKCLKIRKSKVSLLINYFLDRMDLHCCALTTSNLDLAALILFSPQDIRCYHMFS 151 Query: 148 EGGMTNLERQQILTEEQYLDALEE-------------FGDEFDAKMGAEAIQALLKSMDL 194 +I T++ + + E EF GA ++ + S Sbjct: 152 FAIYITHPFSRIQTDKVTNNGITEQLLAPCCQDSPQVSVREFRPTEGACFLELKIPSRSR 211 Query: 195 EQ---------ECEQLREELNETNSETKRKKLTKRIKL---LEAFVQSGNKPEWMILTVL 242 + + L+ ++ ++ +RI + + + IL L Sbjct: 212 PKDGFWDFLARYGYRYGHNLSRILLPSEVMEILRRIPEDTRKKLVRKGYFPQDGYILQYL 271 Query: 243 PVLPPDLRPLVPLDGGRFATSDLND-LYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQE 301 PV P L DG +SDL+ + ++V+ + +K + E LQ Sbjct: 272 PVPPNCLSVPDISDGVSIMSSDLSVSMLKKVLKQIEVIKGSRSGEPNFESHKIEANNLQS 331 Query: 302 AVDALLDNGRRGRAITGSNKRPLKSLA---DMIKGKQGRFRQNLLGKRVDYSGRSVITVG 358 +++ L+ + + R S K + R + K +S RSVIT Sbjct: 332 SIEQYLEVRGTAKTSRSLDTRFGSSKEPNESSTKAWLEKMRTLFIRKGSGFSSRSVITGD 391 Query: 359 PYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWD-------- 410 Y R+++ GLP ++A + ++ L + + R+ + Sbjct: 392 AYKRVNEIGLPFEIAQRITFEERVNVHNMKHLQNLVDEKLCLTYRDGLSTYSLREGSKGH 451 Query: 411 --------ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFD 462 + ++ V +NR PT H+ +QA + + ++++PL+C +ADFD Sbjct: 452 TFLRPGQVVHRRIMDGDIVFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFD 511 Query: 463 GDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKG 522 GD + + P +L A+ E L +LS +G + + D +L L + K Sbjct: 512 GDCVHLFYPQSLGAKAEVLELFSVEKQLLSSHSGNLNLQLATDSLLSLKVLFERYFLNKA 571 Query: 523 EGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMI 582 L A +K + +T+L I Sbjct: 572 AAQQLVMFVSMS-------LPRPALLK--SPCSGPCWTALQILQTALPSYFDCIGERHWI 622 Query: 583 VPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGID 642 + N+ + + +++++ + + G + F D + G SV ++ Sbjct: 623 SKSAILKVDYNRDVLQSLVNEIVTSIFSEKGPNEVLKFFDSLQPLLMENLFSEGFSVSLE 682 Query: 643 DMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQ 702 D IP + + I + +++ + L YN+++ + A + R++K + N Sbjct: 683 DFSIPSEVTQNIQKNVEDISSL-------LYNLRSMYNELLQLQAENHLRLTKVPVANFI 735 Query: 703 TETVINRDGQEEKQVSFNSI------YMMADSGARGSAAQIRQLAGMRGLMA-------- 748 + + + K S + ++ +G + GM L Sbjct: 736 LNSSALGNLIDSKSDSAINKVVQQIGFLGQQLSEKGKFYSRTLVEGMAYLFKSKYPFHGA 795 Query: 749 -KPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDL 807 P G I + F GL+ + + + R+ + ++ + G L + L+ + +D+ Sbjct: 796 DYPSGEF--GLIRSCFFHGLDPYEEMVHSISTREIIVRSSRGLSEPGTLFKNLMAILRDV 853 Query: 808 VVTEDDCGTH-EGIMMTPVIEGGDVKEPLRDRV-----LGRVTAEDVLKPGTADILVPRN 861 V+ D + + G + + +G + A + P +L Sbjct: 854 VICYDGTVRNVCSNSIIQFEYGVKARTKPQHFFPAGEPVGVLAATAMSNPAYKAVLDSSP 913 Query: 862 TLLHE--------QWCDLLEENSVDAVKVRSVVSCDTDFGVCAHC---------YGRDLA 904 + + + +D + + CD C L Sbjct: 914 SSNSSWELMKEILLCQVNFKNDLIDRRVILYLNDCDCGRKYCRENAAYLVKNQLKKASLK 973 Query: 905 RGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASR-AAAESSI-QVKNKGSIKLSN 962 + E + A EPGT L + + Q + Sbjct: 974 DTAVEFMIEYVKQHAVSGSSEPGTGLVGHIHLNKLLLQDLNVSMQEVCQKCEETINSFRK 1033 Query: 963 VKSVVNSSGKLVITSRNT 980 K+V K++++ R Sbjct: 1034 KKNVGPFFKKIILSFREC 1051 >UniRef50_Q9BHJ4 DNA-directed RNA polymerase (Fragment) n=2 Tax=Trachipleistophora RepID=Q9BHJ4_TRAHO Length = 1056 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 126/457 (27%), Positives = 196/457 (42%), Gaps = 47/457 (10%) Query: 103 GHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTE 162 GHIEL P H+ ++ I LL+ R+ ++ + Sbjct: 1 GHIELTRPVFHVGYMNK----IKKLLETVCFYCSRIKAYD-------------VHKEGVH 43 Query: 163 EQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREE-------LNETNSETKRK 215 Q L M ++ Q L+K L E+ LN T K Sbjct: 44 RQGLSYFWGLCKGKTQCMHCQSKQPLIKRDGLSLIAFIRGEDNTEGKVILNGERVHTVFK 103 Query: 216 KLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINR 275 +++ F + +PEWMI++VL V PP +RP V L+G DL ++ Sbjct: 104 RISTEECEALGFDEQYARPEWMIISVLNVPPPAVRPSVVLEGMLRGEDDLTHKLADIVKA 163 Query: 276 NNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAIT-GSNKRPLKSLADMIKGK 334 N L + AP I+R+ + +LQ V L+DN G + + RPLKSL+ +KGK Sbjct: 164 NANLAKYEREGAPGHIIRDYESLLQYHVATLMDNNIPGLPQSLQKSGRPLKSLSARLKGK 223 Query: 335 QGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTI 394 +GR R NL+GKRVD S RSVI+ + L + G+P+++A P L + Sbjct: 224 EGRVRGNLMGKRVDSSARSVISPDSNISLCEVGVPEQIARIHTFPEHVTAFNKARLEALV 283 Query: 395 KAA------KKMVEREEAVVWD---------------ILDEVIREHPVLLNRAPTLHRLG 433 + V RE+ D + + VL NR P+LH++ Sbjct: 284 RNGPNKWPGANFVTREDGQRIDLRFNRNSILLTEGCVVERHMTAGDVVLFNRQPSLHKMS 343 Query: 434 IQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSP 493 + A +++GK +L+ V + YNADFDGD+M +H+P + E + N+LS Sbjct: 344 MMAHRARVMKGKTFRLNLSVTSPYNADFDGDEMNLHMPQNHNTRAELENICGVDRNVLSC 403 Query: 494 ANGEPIIVPSQDVVLGLYYMTRDCVNAKG-EGMVLTG 529 +P++ QD ++G+ MT D V + EG L Sbjct: 404 QGNKPVMGIVQDSLVGVRKMTDDGVFIEWYEGQHLLY 440 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 62/403 (15%), Positives = 134/403 (33%), Gaps = 36/403 (8%) Query: 543 SLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAIS 602 V+ + + G+ + +L R + +I L +++ + + Sbjct: 545 PPTNTVRPAVLRPRRLFTGKQMFSCTLPCINYERGDV-LIKHGILIKGCIDKKVVGTSQG 603 Query: 603 KMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPE----KKHEIISEAE 658 +++ K V F D + Y ++G ++G+ D + E E I ++ Sbjct: 604 SLVHVLALE--NKHIVRFFDSLQRVVNGYLLQAGFTMGVGDTIADECTLRDVMEGIRASK 661 Query: 659 AEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVS 718 EV + +SG + N + + L ++ + Sbjct: 662 QEVRALIADARSGTLRRMPGMNL--------RETFESRISQALNRARDVSGSSANAGLGT 713 Query: 719 FNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSI-------------------IETPI 759 N++ MM +G++GS I Q+ G I + Sbjct: 714 ANNVRMMVMAGSKGSLINISQMTACVGQQNVEGHRIAFSNQRTLPHFHKDDDRPASRGFV 773 Query: 760 TANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEG 819 ++ GL ++F G R+GL DTA+KTA +GY+ RRL+ ++ + + E Sbjct: 774 ENSYLAGLRAHEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMENCQIAFNGSVRSER 833 Query: 820 IMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDA 879 + + G D + R + + D P + + T + N Sbjct: 834 -DVVSFLYGDDGFDGGRVERV-EICGRDYYLPFNFERVYNEFTGGVVDKGEGKVSNIDRE 891 Query: 880 VKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAAQS 922 +V ++ D + ++ ++ + + I + Sbjct: 892 DRVSNIDGEDRVSNIDGEDRVSNIDGEDRVSSIDRVSSIDGED 934 Score = 44.9 bits (104), Expect = 0.023, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 901 RDLARGHIINKGEAIGVIAAQSIGEPGTQLT 931 R+ ++ GE +G +A+QSIGE TQ+T Sbjct: 1025 REKYYRALVCPGEMVGTLASQSIGEHATQMT 1055 >UniRef50_Q58445 Mja rpoA1 intein n=2 Tax=Methanocaldococcus RepID=RPOA1_METJA Length = 1341 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 119/480 (24%), Positives = 198/480 (41%), Gaps = 65/480 (13%) Query: 14 TEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCG 73 +E I L SPD IR S ++ P+T + + P GL R+ Sbjct: 7 PKEIGEIMFGLLSPDYIRQMSVAKIVTPDTYDEDGY-PIDGGLMDTRLG----------- 54 Query: 74 KYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLR 133 + G++C+ CG + + GHIELA P HI F K++ +L Sbjct: 55 ----VIDPGLVCKTCGGRIGECP---GHFGHIELAKPVIHIGFAKTIY----KILKAVCP 103 Query: 134 DIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMD 193 RV S + + +E+ + ++ + EE E + + Sbjct: 104 HCGRVAI--SETKRKEILEKMEKLERDGGNKW-EVCEEVYKEASKVTICPHCGEIKYDIK 160 Query: 194 LEQECEQLREE------LNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPP 247 E+ R + L ++ +K+ +L +PEWM+LTVLPV P Sbjct: 161 FEKPTTYYRIDGNEEKTLTPSDVREILEKIPDEDCILLGLNPEVARPEWMVLTVLPVPPV 220 Query: 248 DLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALL 307 +RP + L+ G + DL +I NNRL+ ++ AP++I+ + +LQ V+ Sbjct: 221 TVRPSITLETGERSEDDLTHKLVDIIRINNRLEENIEGGAPNLIIEDLWNLLQYHVNTYF 280 Query: 308 DNGRRGRAIT-GSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQC 366 DN G + RPLK+LA +KGK+GRFR NL GKRV++S R+VI+ P L +++ Sbjct: 281 DNEAPGIPPAKHRSGRPLKTLAQRLKGKEGRFRYNLAGKRVNFSSRTVISPDPCLSINEV 340 Query: 367 GLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWD---------------- 410 G+P+ +A EL P K + + ++ + V+ Sbjct: 341 GVPEVVAKELTVPEKVTKYNIERIRQLLRNGSEKHPGVNYVIRKMIGRDGTEQEYKVKIT 400 Query: 411 ----------------ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVC 454 + ++ VL NR P+LHR+ I A ++ + + + VC Sbjct: 401 ESNKDFWAENIREGDIVERHLMDGDIVLYNRQPSLHRMSIMAHRVRVLPYRTFRHNLCVC 460 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 105/439 (23%), Positives = 174/439 (39%), Gaps = 50/439 (11%) Query: 453 VCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYY 512 C YNADFDGD+M +HVP + EA+ EA ALM+ +ILSP G PII D + G Y Sbjct: 911 NCPPYNADFDGDEMNLHVPQSEEARAEAEALMLVEKHILSPRFGGPIIGAIHDFISGAYL 970 Query: 513 MTRDCVNAKGEGMVLTGPKEAERLYRSGLA----SLHARVKVRITEYEKDANGELVAKTS 568 +T + ++L + L+ L++ K+ K N AK Sbjct: 971 LTSNYFTKDEATLILRSGGIKDELWEPDKVENGVPLYSGKKIFSKALPKGLNLRYKAKIC 1030 Query: 569 LKDTTVGRAIL-----WMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQ 623 K + +I L ++++ +L+T + G + F D Sbjct: 1031 RKCDVCKKEECEYDAYVVIKDGELIKGVIDKNGYGAEAGLILHTIVKEFGPEAGRKFLDS 1090 Query: 624 IMYTGFAYAARSGASVGIDDMVIPEK----KHEIISEAEAEVAEIQEQFQSGLVTAGERY 679 G + GIDD +PE+ +++ EAE +V EI E+++ G + Sbjct: 1091 ATKMAIRAVMLRGFTTGIDDEDLPEEALKEIEKVLDEAEEKVKEIIEKYERGELELLPGL 1150 Query: 680 NKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQ 739 N + + + L+ E N +MA +GARG+ + Q Sbjct: 1151 NLE--------ESREAYISNVLREARDKAGAIAERYLGLDNHAVIMAVTGARGNILNLTQ 1202 Query: 740 LAGMRGLMAKPDGSIIET--------------------PITANFREGLNVLQYFISTHGA 779 +A G + I + +++++GL+ ++F G Sbjct: 1203 MAACLGQQSVRGKRIFRGYRGRVLPHFEKGDLGARSHGFVRSSYKKGLSPTEFFFHAMGG 1262 Query: 780 RKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPL---- 835 R+GL D A++TA SGY+ RRL++ QDL D +M G D +P+ Sbjct: 1263 REGLVDQAVRTAQSGYMQRRLINALQDLKTEFDGTVRDSRGIMIQFKYGEDGIDPMLADR 1322 Query: 836 -----RDRVLGRVTAEDVL 849 DR++ +V + Sbjct: 1323 GKAVNIDRIIDKVKMKYNQ 1341 >UniRef50_O78483 DNA-directed RNA polymerase subunit beta'' n=2 Tax=Pyrenomonadales RepID=RPOC2_GUITH Length = 1286 Score = 403 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 202/700 (28%), Positives = 336/700 (48%), Gaps = 41/700 (5%) Query: 591 IVNQALGKKAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKK 650 N+ + KK + K++ + G AD+I GF YA ++G S+ ++D+ +P K Sbjct: 14 FTNKVIDKKELKKLMAWAFSNYGTGRASFMADKIKDLGFHYATKAGLSLSVEDLRVPPIK 73 Query: 651 HEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRD 710 +++ +A E+ + ++ ++ G +T ER+ KVID W ++++ ++ + Sbjct: 74 RDLLLQANREIQQTEQLYERGEITTIERFQKVIDTWNNTSEQLKDEVIKYFKQN------ 127 Query: 711 GQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVL 770 N IY+MA SGARG+ +Q+RQL GMRGLMA P G II+ PI +NFREGL V Sbjct: 128 ------DPLNPIYIMAFSGARGNISQVRQLVGMRGLMADPQGQIIDLPIKSNFREGLTVT 181 Query: 771 QYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGD 830 +Y IS++GARKGL DTAL+TA+SGYLTRRLVDVAQD+++ E DCGT GI++ +++ Sbjct: 182 EYLISSYGARKGLVDTALRTADSGYLTRRLVDVAQDIIIREIDCGTQRGIVLRDMVDNNQ 241 Query: 831 VKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDT 890 + L++R++GRV E + P A ++ N L + + + + +V VRS ++C+ Sbjct: 242 ILVSLKNRLIGRVLFETLYLPNDASVIGHINQDLDHDITNSIIKCGIKSVIVRSPLTCEA 301 Query: 891 DFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSI 950 VC CYG +LA G +++ GEA+G+IAAQSIGEPGTQLTMRTFH GG + AE I Sbjct: 302 PRSVCQFCYGWNLAHGSLVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTGELAEQ-I 360 Query: 951 QVKNKGSIKLS---NVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGD 1007 + G I+ ++ + G + I K + G L D Sbjct: 361 RAPFNGIIRYPKNLKIRIIRTRHGNEGVILDENYKLNILNQRGEKTRLEFKQGTTLFISD 420 Query: 1008 GEQVAGGETVAN--------WDPHTMPVITEVSGFVRFTDMIDGQTITRQTDE--LTGLS 1057 E+ G+ + + T ++TE SG V +T++ I RQ + +T Sbjct: 421 NEEFKKGQIIGETKSRSTLVTEKATRDLVTETSGEVIYTNLNIENKIDRQGNSTLITNKG 480 Query: 1058 SLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLED-GVQIS 1116 L+ + + + LKI D D +I ++Y IV+L + +I Sbjct: 481 GLLWILKGDVYNIPYNTDIQLKIGDKIAKDTIISTFKTISEY----NGIVRLNEKNEEIQ 536 Query: 1117 SGDTLARIP--QESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRR 1174 + + D+ P + + +L ++ + Sbjct: 537 ILTDFISLENAEIEYNELDVNIECPINLRFEDGKILN---LLCVPGNKITNSQVIGEYIE 593 Query: 1175 LVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVT-RYI 1233 G + + ++ +G + +VI PE H+I + + + + Sbjct: 594 DNYKTTTGGIIKYKNYAELKKEKNKKGYEINDNEVIYWIPEETHEINKDLSLLLIKNNTL 653 Query: 1234 VNE----VQDVYRLQGVKINDKHIEVIVRQMLRKATIVNA 1269 +N ++DVY L + + IV++++ K I+ Sbjct: 654 INSGTEIIKDVYCLNSGYVEIIQEDEIVKEVIIKPGIIYD 693 Score = 296 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 151/620 (24%), Positives = 257/620 (41%), Gaps = 34/620 (5%) Query: 808 VVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQ 867 ++ + C + + E +++ ++ D + T + + E Sbjct: 660 IIKDVYCLNSGYVEIIQ------EDEIVKEVIIKPGIIYDSSELNTKRNIGTIC-DIKEV 712 Query: 868 WCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEAIGVIAA-QSIGEP 926 E + + + +L + N + + + +S+ + Sbjct: 713 ISTSTENKQIFLDVIGEKLFLRPVESYNIKMSHINLKTKRLTNLEDILNLKVVNRSLYKD 772 Query: 927 GTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLID 986 G ++ +S + I+ + NS+ + + ++L Sbjct: 773 GEKIKSVYGLDLVKTYLIVNFNSNKPYASADIEF---APIENSTKYKLNLTITESIQLNY 829 Query: 987 EFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTI 1046 + + V L DG+++ + +A + + + Sbjct: 830 DIFGAINNEDV--KTSLVIKDGQRIKKEDLIAETHLVARNKGILKNILISSQSTKKLLIM 887 Query: 1047 TRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQ----YFLP 1102 + ++ + S D I G I ++ + Y + Sbjct: 888 REEDTFRVPTNNATIQVSRGDLVKYGDQLAGSVIASESGQVFEITKNEIILRKAYPYLVS 947 Query: 1103 GKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGI 1162 AI+Q++D + DTLA + E T DI GLPR+ ++ EAR+PKEP L++ G Sbjct: 948 AGAILQIKDHELVQRNDTLAILVFERSKTGDIVQGLPRIEEILEARKPKEPCKLSQKPGK 1007 Query: 1163 VSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILR 1222 ++ + + DG + +I ++L + GE V + ++DG PH++L Sbjct: 1008 INTTNSNDETEVIQLIDTDGY-TTDYIINNNQKLIISNGENVLLAEPLTDGAPNPHEMLN 1066 Query: 1223 L----------------RGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATI 1266 L + V Y+V+EVQ VY+ Q V I+DKHIEVIVRQM K + Sbjct: 1067 LYFNFYTSIITLYESAKLSLQKVQTYLVDEVQKVYQSQNVDISDKHIEVIVRQMTSKVKV 1126 Query: 1267 VNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQ 1326 + G + L GE VE +++ N + V ATY LLGITKASL T+SFISAASFQ Sbjct: 1127 EDGGDTTLLPGELVELQQIENINEAMMLTKGVPATYCPILLGITKASLNTDSFISAASFQ 1186 Query: 1327 ETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQVTA 1386 ETTRVLTEAA+ GK D LRGLKENVI+GRLIPAGTG+ + ++ + + + P Sbjct: 1187 ETTRVLTEAAIEGKADWLRGLKENVIIGRLIPAGTGFNAYNEQHKSSKSMKLTGIPDTYY 1246 Query: 1387 EDASASLAELLNAGLGGSDN 1406 +S + + + + +N Sbjct: 1247 LSSSLEVEDSKLSTIIEDNN 1266 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.311 0.117 0.296 Lambda K H 0.267 0.0358 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,647,637,540 Number of Sequences: 3077464 Number of extensions: 270442098 Number of successful extensions: 851764 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 1496 Number of HSP's successfully gapped in prelim test: 155 Number of HSP's that attempted gapping in prelim test: 838727 Number of HSP's gapped (non-prelim): 5477 length of query: 1407 length of database: 1,040,396,356 effective HSP length: 141 effective length of query: 1266 effective length of database: 606,473,932 effective search space: 767795997912 effective search space used: 767795997912 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 99 (42.9 bits)