Phyre 2 alignment of Q46833 with d1jb0j_

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Job Description | Q46833
Confidence | 2.68% | Date | Thu Jan 5 12:34:58 GMT 2012
Rank | 80 | Aligned Residues | 24
% Identity | 17% | Template | d1jb0j_
SCOP info | Single transmembrane helix | Subunit IX of photosystem I reaction centre, PsaJ | Subunit IX of photosystem I reaction centre, PsaJ
Resolution | 2.50

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

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Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Query Sequence |  | I | A | Q | W | L | Q | E | N | G | I | T | R | A | T | V | A | P | D | W | M | S | I | P | C
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Template Sequence |  | W | M | T | I | T | A | G | I | L | I | E | F | N | R | F | Y | P | D | L | L | F | H | P | L
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S |  |  |  | S | S |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 18 | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | .

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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