Phyre 2 Results for Q46833

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Email | l.a.kelley@imperial.ac.uk
Description | Q46833
Date | Thu Jan 5 12:34:58 GMT 2012
Unique Job ID | 6858a45ffad35f08

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c1yf5L_
Top template information
PDB header:transport protein Chain: L: PDB Molecule:general secretion pathway protein l; PDBTitle: cyto-epsl: the cytoplasmic domain of epsl, an inner membrane component2 of the type ii secretion system of vibrio cholerae
Confidence and coverage
Confidence: | 99.9% | Coverage: | 43%
122 residues ( 43% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
200 residues ( 70%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | I | H | Q | Q | H | M | R | N | I | A | Q | W | L | Q | E | N | G | I | T | R | A | T | V | A | P | D | W | M | S | I | P | C | G | F | M | A | C | D | A | Q | R | V | I | C | R | I | D | E | C | R | G | W | S | A | G | L | A | L | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | P | V | M | F | R | A | Q | L | N | E | Q | D | L | P | L | S | L | T | V | V | G | I | A | P | E | K | L | S | A | W | A | G | A | D | A | E | R | L | T | V | T | A | L | P | A | I | T | T | Y | G | E | P | E | G | N | L | L | T | G | P
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? | ? | ? | ? | ? | ? |  |  |  | ? |  | ? | ? | ? | ? |  |  |  |  |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  | ? |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | W | Q | P | R | V | S | Y | R | K | Q | W | A | R | W | R | V | M | I | L | P | I | L | L | I | L | V | A | L | A | V | E | R | G | V | T | L | W | S | V | S | E | Q | V | A | Q | S | R | T | Q | A | E | E | Q | F | L | T | L | F | P | E
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | Q | K | R | I | V | N | L | R | S | Q | V | T | M | A | L | K | K | Y | R | P | Q | A | D | D | T | R | L | L | A | E | L | S | A | I | A | S | T | L | K | S | A | S | L | S | D | I | E | M | R | G | F | T | F | D | Q | K | R | Q | I | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  | ? |  | ? | ? | ? |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | .
Sequence |  | H | L | Q | L | R | A | A | N | F | A | S | F | D | K | L | R | S | V | L | A | T | D | Y | V | V | Q | Q | D | A | L | Q | K | E | G | D | A | V | S | G | G | V | T | L | R | R | K
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c1yf5L_ |

### PDB 1yf5 chain L

Region: 1 - 122
Aligned: 122
Modelled: 122
Confidence: 99.9%
Identity: 16%
PDB header:transport protein
Chain: L: PDB Molecule:general secretion pathway protein l;
PDBTitle: cyto-epsl: the cytoplasmic domain of epsl, an inner membrane component2 of the type ii secretion system of vibrio cholerae

Phyre2
2 |
| c2w7vB_ |

### PDB 2w7v chain B

Region: 202 - 286
Aligned: 82
Modelled: 85
Confidence: 99.8%
Identity: 29%
PDB header:transport protein
Chain: B: PDB Molecule:general secretion pathway protein l;
PDBTitle: periplasmic domain of epsl from vibrio parahaemolyticus

Phyre2
3 |
| d2bh1a1 |

### PDB 2bh1 chain A domain 1

Region: 35 - 122
Aligned: 88
Modelled: 88
Confidence: 99.6%
Identity: 15%
Fold: Ribonuclease H-like motif
Superfamily: Actin-like ATPase domain
Family: Cyto-EpsL domain

Phyre2
4 |
| d1uv7a_ |

### PDB 1uv7 chain A

Region: 228 - 285
Aligned: 56
Modelled: 58
Confidence: 78.8%
Identity: 11%
Fold: RRF/tRNA synthetase additional domain-like
Superfamily: General secretion pathway protein M, EpsM
Family: General secretion pathway protein M, EpsM

Phyre2
5 |
| c1uv7A_ |

### PDB 1uv7 chain A

Region: 228 - 285
Aligned: 56
Modelled: 58
Confidence: 78.8%
Identity: 11%
PDB header:transport
Chain: A: PDB Molecule:general secretion pathway protein m;
PDBTitle: periplasmic domain of epsm from vibrio cholerae

Phyre2
6 |
| c2l3mA_ |

### PDB 2l3m chain A

Region: 212 - 266
Aligned: 50
Modelled: 55
Confidence: 33.8%
Identity: 20%
PDB header:metal binding protein
Chain: A: PDB Molecule:copper-ion-binding protein;
PDBTitle: solution structure of the putative copper-ion-binding protein from2 bacillus anthracis str. ames

Phyre2
7 |
| d1p6ta2 |

### PDB 1p6t chain A domain 2

Region: 212 - 276
Aligned: 60
Modelled: 65
Confidence: 29.6%
Identity: 12%
Fold: Ferredoxin-like
Superfamily: HMA, heavy metal-associated domain
Family: HMA, heavy metal-associated domain

Phyre2
8 |
| d2aw0a_ |

### PDB 2aw0 chain A

Region: 212 - 267
Aligned: 51
Modelled: 56
Confidence: 27.1%
Identity: 10%
Fold: Ferredoxin-like
Superfamily: HMA, heavy metal-associated domain
Family: HMA, heavy metal-associated domain

Phyre2
9 |
| d1cpza_ |

### PDB 1cpz chain A

Region: 212 - 267
Aligned: 51
Modelled: 56
Confidence: 21.5%
Identity: 12%
Fold: Ferredoxin-like
Superfamily: HMA, heavy metal-associated domain
Family: HMA, heavy metal-associated domain

Phyre2
10 |
| d1s6ua_ |

### PDB 1s6u chain A

Region: 228 - 273
Aligned: 45
Modelled: 46
Confidence: 20.9%
Identity: 4%
Fold: Ferredoxin-like
Superfamily: HMA, heavy metal-associated domain
Family: HMA, heavy metal-associated domain

Phyre2
11 |
| d1sb6a_ |

### PDB 1sb6 chain A

Region: 212 - 266
Aligned: 47
Modelled: 55
Confidence: 20.5%
Identity: 13%
Fold: Ferredoxin-like
Superfamily: HMA, heavy metal-associated domain
Family: HMA, heavy metal-associated domain

Phyre2
12 |
| c2kt2A_ |

### PDB 2kt2 chain A

Region: 228 - 270
Aligned: 41
Modelled: 43
Confidence: 17.9%
Identity: 15%
PDB header:oxidoreductase
Chain: A: PDB Molecule:mercuric reductase;
PDBTitle: structure of nmera, the n-terminal hma domain of tn501 mercuric2 reductase

Phyre2
13 |
| c2jpiA_ |

### PDB 2jpi chain A

Region: 232 - 263
Aligned: 32
Modelled: 32
Confidence: 17.3%
Identity: 13%
PDB header:structural genomics
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: chemical shift assignments of pa4090 from pseudomonas2 aeruginosa

Phyre2
14 |
| d1p6ta1 |

### PDB 1p6t chain A domain 1

Region: 212 - 265
Aligned: 49
Modelled: 54
Confidence: 17.1%
Identity: 10%
Fold: Ferredoxin-like
Superfamily: HMA, heavy metal-associated domain
Family: HMA, heavy metal-associated domain

Phyre2
15 |
| d2qifa1 |

### PDB 2qif chain A domain 1

Region: 212 - 265
Aligned: 49
Modelled: 54
Confidence: 16.0%
Identity: 12%
Fold: Ferredoxin-like
Superfamily: HMA, heavy metal-associated domain
Family: HMA, heavy metal-associated domain

Phyre2
16 |
| d1f44a1 |

### PDB 1f44 chain A domain 1

Region: 4 - 30
Aligned: 27
Modelled: 27
Confidence: 14.5%
Identity: 19%
Fold: SAM domain-like
Superfamily: lambda integrase-like, N-terminal domain
Family: lambda integrase-like, N-terminal domain

Phyre2
17 |
| c2k2pA_ |

### PDB 2k2p chain A

Region: 212 - 266
Aligned: 47
Modelled: 55
Confidence: 14.4%
Identity: 6%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein atu1203;
PDBTitle: solution nmr structure of protein atu1203 from agrobacterium2 tumefaciens. northeast structural genomics consortium (nesg) target3 att10, ontario center for structural proteomics target atc1183

Phyre2
18 |
| c3dxsX_ |

### PDB 3dxs chain X

Region: 212 - 267
Aligned: 51
Modelled: 56
Confidence: 13.7%
Identity: 4%
PDB header:hydrolase
Chain: X: PDB Molecule:copper-transporting atpase ran1;
PDBTitle: crystal structure of a copper binding domain from hma7, a p-2 type atpase

Phyre2
19 |
| d1mwza_ |

### PDB 1mwz chain A

Region: 228 - 272
Aligned: 42
Modelled: 45
Confidence: 13.5%
Identity: 10%
Fold: Ferredoxin-like
Superfamily: HMA, heavy metal-associated domain
Family: HMA, heavy metal-associated domain

Phyre2
20 |
| d1j5ya2 |

### PDB 1j5y chain A domain 2

Region: 243 - 267
Aligned: 25
Modelled: 25
Confidence: 13.2%
Identity: 8%
Fold: HPr-like
Superfamily: Putative transcriptional regulator TM1602, C-terminal domain
Family: Putative transcriptional regulator TM1602, C-terminal domain

Phyre2
21 |
22 |
23 |
24 |
25 |
26 |
27 |
28 |
29 |
30 |
31 |
32 |
33 |
34 |
35 |
36 |
37 |
38 |
39 |
40 |
41 |
42 |
43 |
44 |
45 |
46 |
47 |
48 |
49 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c1yf5L_ |
|  | 99.9 | 16 | PDB header:transport protein Chain: L: PDB Molecule:general secretion pathway protein l; PDBTitle: cyto-epsl: the cytoplasmic domain of epsl, an inner membrane component2 of the type ii secretion system of vibrio cholerae
2 | c2w7vB_ |
|  | 99.8 | 29 | PDB header:transport protein Chain: B: PDB Molecule:general secretion pathway protein l; PDBTitle: periplasmic domain of epsl from vibrio parahaemolyticus
3 | d2bh1a1 |
|  | 99.6 | 15 | Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Cyto-EpsL domain
4 | d1uv7a_ |
|  | 78.8 | 11 | Fold:RRF/tRNA synthetase additional domain-like Superfamily:General secretion pathway protein M, EpsM Family:General secretion pathway protein M, EpsM
5 | c1uv7A_ |
|  | 78.8 | 11 | PDB header:transport Chain: A: PDB Molecule:general secretion pathway protein m; PDBTitle: periplasmic domain of epsm from vibrio cholerae
6 | c2l3mA_ |
|  | 33.8 | 20 | PDB header:metal binding protein Chain: A: PDB Molecule:copper-ion-binding protein; PDBTitle: solution structure of the putative copper-ion-binding protein from2 bacillus anthracis str. ames
7 | d1p6ta2 |
|  | 29.6 | 12 | Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain
8 | d2aw0a_ |
|  | 27.1 | 10 | Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain
9 | d1cpza_ |
|  | 21.5 | 12 | Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain
10 | d1s6ua_ |
|  | 20.9 | 4 | Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain
11 | d1sb6a_ |
|  | 20.5 | 13 | Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain
12 | c2kt2A_ |
|  | 17.9 | 15 | PDB header:oxidoreductase Chain: A: PDB Molecule:mercuric reductase; PDBTitle: structure of nmera, the n-terminal hma domain of tn501 mercuric2 reductase
13 | c2jpiA_ |
|  | 17.3 | 13 | PDB header:structural genomics Chain: A: PDB Molecule:hypothetical protein; PDBTitle: chemical shift assignments of pa4090 from pseudomonas2 aeruginosa
14 | d1p6ta1 |
|  | 17.1 | 10 | Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain
15 | d2qifa1 |
|  | 16.0 | 12 | Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain
16 | d1f44a1 |
|  | 14.5 | 19 | Fold:SAM domain-like Superfamily:lambda integrase-like, N-terminal domain Family:lambda integrase-like, N-terminal domain
17 | c2k2pA_ |
|  | 14.4 | 6 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu1203; PDBTitle: solution nmr structure of protein atu1203 from agrobacterium2 tumefaciens. northeast structural genomics consortium (nesg) target3 att10, ontario center for structural proteomics target atc1183
18 | c3dxsX_ |
|  | 13.7 | 4 | PDB header:hydrolase Chain: X: PDB Molecule:copper-transporting atpase ran1; PDBTitle: crystal structure of a copper binding domain from hma7, a p-2 type atpase
19 | d1mwza_ |
|  | 13.5 | 10 | Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain
20 | d1j5ya2 |
|  | 13.2 | 8 | Fold:HPr-like Superfamily:Putative transcriptional regulator TM1602, C-terminal domain Family:Putative transcriptional regulator TM1602, C-terminal domain
21 | c1yg0A_ |
| not modelled | 12.9 | 14 | PDB header:metal transport Chain: A: PDB Molecule:cop associated protein; PDBTitle: solution structure of apo-copp from helicobacter pylori
22 | c2x29A_ |
| not modelled | 11.9 | 22 | PDB header:cell adhesion Chain: A: PDB Molecule:tumor necrosis factor ligand superfamily member PDBTitle: crystal structure of human4-1bb ligand ectodomain
23 | d1kvja_ |
| not modelled | 11.5 | 4 | Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain
24 | c3hd7A_ |
| not modelled | 11.1 | 12 | PDB header:exocytosis Chain: A: PDB Molecule:vesicle-associated membrane protein 2; PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1
25 | d2ggpb1 |
| not modelled | 10.7 | 3 | Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain
26 | c2gcfA_ |
| not modelled | 9.8 | 5 | PDB header:hydrolase Chain: A: PDB Molecule:cation-transporting atpase pacs; PDBTitle: solution structure of the n-terminal domain of the coppper(i) atpase2 pacs in its apo form
27 | c3ibwA_ |
| not modelled | 9.6 | 17 | PDB header:transferase Chain: A: PDB Molecule:gtp pyrophosphokinase; PDBTitle: crystal structure of the act domain from gtp2 pyrophosphokinase of chlorobium tepidum. northeast3 structural genomics consortium target ctr148a
28 | c2rrlA_ |
| not modelled | 9.4 | 16 | PDB header:protein transport Chain: A: PDB Molecule:flagellar hook-length control protein; PDBTitle: solution structure of the c-terminal domain of the flik
29 | d1je3a_ |
| not modelled | 9.2 | 15 | Fold:IF3-like Superfamily:SirA-like Family:SirA-like
30 | c2kyzA_ |
| not modelled | 9.1 | 15 | PDB header:metal binding protein Chain: A: PDB Molecule:heavy metal binding protein; PDBTitle: nmr structure of heavy metal binding protein tm0320 from thermotoga2 maritima
31 | d2vzsa2 |
| not modelled | 9.0 | 15 | Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain
32 | c2ofhX_ |
| not modelled | 9.0 | 11 | PDB header:hydrolase, membrane protein Chain: X: PDB Molecule:zinc-transporting atpase; PDBTitle: solution structure of the n-terminal domain of the zinc(ii) atpase2 ziaa in its apo form
33 | c2yciX_ |
| not modelled | 8.8 | 16 | PDB header:transferase Chain: X: PDB Molecule:5-methyltetrahydrofolate corrinoid/iron sulfur protein PDBTitle: methyltransferase native
34 | d1osda_ |
| not modelled | 8.3 | 12 | Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain
35 | c2l3wA_ |
| not modelled | 7.7 | 7 | PDB header:photosynthesis Chain: A: PDB Molecule:phycobilisome rod linker polypeptide; PDBTitle: solution nmr structure of the pbs linker domain of phycobilisome rod2 linker polypeptide from synechococcus elongatus, northeast structural3 genomics consortium target snr168a
36 | c3h0dB_ |
| not modelled | 7.5 | 25 | PDB header:transcription/dna Chain: B: PDB Molecule:ctsr; PDBTitle: crystal structure of ctsr in complex with a 26bp dna duplex
37 | d1afia_ |
| not modelled | 7.3 | 15 | Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain
38 | c3k13A_ |
| not modelled | 7.2 | 9 | PDB header:transferase Chain: A: PDB Molecule:5-methyltetrahydrofolate-homocysteine methyltransferase; PDBTitle: structure of the pterin-binding domain metr of 5-2 methyltetrahydrofolate-homocysteine methyltransferase from3 bacteroides thetaiotaomicron
39 | c1yjrA_ |
| not modelled | 7.1 | 3 | PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the apo form of the sixth soluble2 domain a69p mutant of menkes protein
40 | c3fryB_ |
| not modelled | 7.1 | 14 | PDB header:hydrolase Chain: B: PDB Molecule:probable copper-exporting p-type atpase a; PDBTitle: crystal structure of the copa c-terminal metal binding domain
41 | c3nklA_ |
| not modelled | 6.9 | 14 | PDB header:oxidoreductase/lyase Chain: A: PDB Molecule:udp-d-quinovosamine 4-dehydrogenase; PDBTitle: crystal structure of udp-d-quinovosamine 4-dehydrogenase from vibrio2 fischeri
42 | c2rjzA_ |
| not modelled | 6.9 | 13 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:pilo protein; PDBTitle: crystal structure of the type 4 fimbrial biogenesis protein pilo from2 pseudomonas aeruginosa
43 | c2ldiA_ |
| not modelled | 6.5 | 11 | PDB header:hydrolase Chain: A: PDB Molecule:zinc-transporting atpase; PDBTitle: nmr solution structure of ziaan sub mutant
44 | c2ropA_ |
| not modelled | 6.5 | 14 | PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 2; PDBTitle: solution structure of domains 3 and 4 of human atp7b
45 | c2ychA_ |
| not modelled | 6.5 | 10 | PDB header:cell cycle Chain: A: PDB Molecule:competence protein pilm; PDBTitle: pilm-piln type iv pilus biogenesis complex
46 | d1q8la_ |
| not modelled | 6.2 | 5 | Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain
47 | c1y3kA_ |
| not modelled | 5.8 | 8 | PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the apo form of the fifth domain of2 menkes protein
48 | c2k42B_ |
| not modelled | 5.4 | 30 | PDB header:signaling protein Chain: B: PDB Molecule:espfu; PDBTitle: solution structure of the gtpase binding domain of wasp in2 complex with espfu, an ehec effector
49 | d1t1ea2 |
| not modelled | 5.1 | 10 | Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Subtilase propeptides/inhibitors

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0