16/01/2012 03:47:25 : INFO  : Run start: Mon Jan 16 03:47:24 GMT 2012
16/01/2012 03:47:27 : INFO  : Initialised job
16/01/2012 03:47:28 : INFO  : Renaming log file 'phyre2_20120116_034724.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/6858a45ffad35f08/phyre_20120116_034724.log'
16/01/2012 03:47:29 : INFO  : Initialised job:
Sequence
>batch____
MIHQQHMRNIAQWLQENGITRATVAPDWMSIPCGFMACDAQRVICRIDECRGWSAGLALA
PVMFRAQLNEQDLPLSLTVVGIAPEKLSAWAGADAERLTVTALPAITTYGEPEGNLLTGP
WQPRVSYRKQWARWRVMILPILLILVALAVERGVTLWSVSEQVAQSRTQAEEQFLTLFPE
QKRIVNLRSQVTMALKKYRPQADDTRLLAELSAIASTLKSASLSDIEMRGFTFDQKRQIL
HLQLRAANFASFDKLRSVLATDYVVQQDALQKEGDAVSGGVTLRRK

16/01/2012 03:47:30 : INFO  : Checked sequence
16/01/2012 03:47:31 : INFO  : Finding homologues with PSI-BLAST
16/01/2012 03:47:32 : INFO  : PSI-BLAST 3 iterations
16/01/2012 03:48:37 : INFO  : PSI-BLAST 5 iterations
16/01/2012 03:49:42 : INFO  : Finished PSI-BLAST
16/01/2012 03:49:43 : INFO  : Running Buildali to generate a3m file
16/01/2012 03:53:16 : INFO  : Converting to HMM
16/01/2012 03:53:17 : INFO  : Calibrating HMM
16/01/2012 03:53:27 : INFO  : Searching HMM database
16/01/2012 03:59:29 : INFO  : Finished buildali
16/01/2012 03:59:30 : INFO  : Predicting secondary structure
16/01/2012 03:59:33 : INFO  : Predicted secondary structure (PSI-Pred)
16/01/2012 03:59:34 : INFO  : Predicting Disordered regions
16/01/2012 03:59:35 : INFO  : Predicted Disorder (Disopred)
16/01/2012 03:59:36 : INFO  : Running memsat_svm check
16/01/2012 04:01:01 : INFO  : Globular protein
16/01/2012 04:01:01 : INFO  : Predicted Transmembrane (memsat_svm) ID '6858a45ffad35f08'
16/01/2012 04:01:02 : INFO  : Initialising fold library search
16/01/2012 04:01:03 : INFO  : Initialised search input
16/01/2012 04:01:04 : INFO  : Building Ensemble models
16/01/2012 04:01:06 : INFO  : Building hh.c1yf5L_.model.1.pdb
16/01/2012 04:01:12 : INFO  : Building hh.c2w7vB_.model.2.pdb
16/01/2012 04:01:17 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/6858a45ffad35f08/hh.c2w7vB_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/6858a45ffad35f08/c2w7vB_.2.pdb
16/01/2012 04:01:19 : INFO  : Building c1yf5L_.1.pdb
16/01/2012 04:01:25 : INFO  : Building c2w7vB_.2.pdb
16/01/2012 04:01:32 : INFO  : Building d2bh1a1.3.pdb
16/01/2012 04:01:40 : INFO  : Building d1uv7a_.4.pdb
16/01/2012 04:01:49 : INFO  : Building c1uv7A_.5.pdb
16/01/2012 04:01:56 : INFO  : Building c2l3mA_.6.pdb
16/01/2012 04:02:04 : INFO  : Building d1p6ta2.7.pdb
16/01/2012 04:02:10 : INFO  : Building d2aw0a_.8.pdb
16/01/2012 04:02:21 : INFO  : Building d1cpza_.9.pdb
16/01/2012 04:02:27 : INFO  : Building d1s6ua_.10.pdb
16/01/2012 04:02:33 : INFO  : Building d1sb6a_.11.pdb
16/01/2012 04:02:39 : INFO  : Building c2kt2A_.12.pdb
16/01/2012 04:02:46 : INFO  : Building c2jpiA_.13.pdb
16/01/2012 04:02:54 : INFO  : Building d1p6ta1.14.pdb
16/01/2012 04:03:01 : INFO  : Building d2qifa1.15.pdb
16/01/2012 04:03:08 : INFO  : Building d1f44a1.16.pdb
16/01/2012 04:03:15 : INFO  : Building c2k2pA_.17.pdb
16/01/2012 04:03:22 : INFO  : Building c3dxsX_.18.pdb
16/01/2012 04:03:31 : INFO  : Building d1mwza_.19.pdb
16/01/2012 04:03:39 : INFO  : Building d1j5ya2.20.pdb
16/01/2012 04:04:07 : INFO  : Finished HH model building
16/01/2012 04:04:08 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
16/01/2012 04:05:13 : INFO  : html domain output complete ID '6858a45ffad35f08'
16/01/2012 04:18:02 : INFO  : Run end  : Mon Jan 16 04:18:01 GMT 2012
