Phyre 2 alignment of Q46833 with c3h0dB_

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Job Description | Q46833
Confidence | 7.52% | Date | Thu Jan 5 12:34:58 GMT 2012
Rank | 36 | Aligned Residues | 20
% Identity | 25% | Template | c3h0dB_
PDB info | PDB header:transcription/dna | Chain: B: PDB Molecule:ctsr; | PDBTitle: crystal structure of ctsr in complex with a 26bp dna duplex
Resolution | 2.40 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | A | T | D | Y | V | V | Q | Q | D | A | L | Q | K | E | G | D | A | V | S | G | G | V | T | L | R | R
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  | . | . |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  | . | . |  |  |  |  |  |  |
Template Sequence |  | E | R | G | Y | I | V | E | . | . | . | . | S | K | R | G | G | G | . | . | G | Y | I | R | I | X | K
Template Known Secondary structure |  | T | T | T |  |  |  |  | . | . | . | . |  |  |  | S | T | T | . | . |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  | . | . |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 53 | . | . | . | . | . | . |  |  |  |  | 60 | . | . | . | . | . |  |  | . | . | . | . | 70 | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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