16/01/2012 14:44:30 : INFO  : Run start: Mon Jan 16 14:44:28 GMT 2012
16/01/2012 14:44:38 : INFO  : Initialised job
16/01/2012 14:44:41 : INFO  : Renaming log file 'phyre2_20120116_144427.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/680ddef5808403e7/phyre_20120116_144427.log'
16/01/2012 14:44:43 : INFO  : Initialised job:
Sequence
>batch____
MPQSALFTGIIPPVSTIFTADGQLDKPGTAALIDDLIKAGVDGLFFLGSGGEFSQLGAEE
RKAIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQQAGADGIVVINPYYWKVSEANL
IRYFEQVADSVTLPVMLYNFPALTGQDLTPALVKTLADSRSNIIGIKDTIDSVAHLRSMI
HTVKGAHPHFTVLCGYDDHLFNTLLLGGDGAISASGNFAPQVSVNLLKAWRDGDVAKAAG
YHQTLLQIPQMYQLDTPFVNVIKEAIVLCGRPVSTHVLPPASPLDEPRKAQLKTLLQQLK
LC

16/01/2012 14:44:45 : INFO  : Checked sequence
16/01/2012 14:44:50 : INFO  : Finding homologues with PSI-BLAST
16/01/2012 14:44:52 : INFO  : PSI-BLAST 3 iterations
16/01/2012 14:46:57 : INFO  : PSI-BLAST 5 iterations
16/01/2012 14:49:03 : INFO  : Finished PSI-BLAST
16/01/2012 14:49:07 : INFO  : Running Buildali to generate a3m file
16/01/2012 15:00:12 : INFO  : Converting to HMM
16/01/2012 15:00:18 : INFO  : Calibrating HMM
16/01/2012 15:00:45 : INFO  : Searching HMM database
16/01/2012 15:06:25 : INFO  : Finished buildali
16/01/2012 15:06:29 : INFO  : Predicting secondary structure
16/01/2012 15:06:45 : INFO  : Predicted secondary structure (PSI-Pred)
16/01/2012 15:06:49 : INFO  : Predicting Disordered regions
16/01/2012 15:06:58 : INFO  : Predicted Disorder (Disopred)
16/01/2012 15:07:02 : INFO  : Running memsat_svm check
16/01/2012 15:12:54 : INFO  : Running memsat_svm full
16/01/2012 15:24:28 : INFO  : Predicted Transmembrane (memsat_svm) ID '680ddef5808403e7'
16/01/2012 15:24:31 : INFO  : Initialising fold library search
16/01/2012 15:24:38 : INFO  : Initialised search input
16/01/2012 15:24:43 : INFO  : Building Ensemble models
16/01/2012 15:24:49 : INFO  : Building hh.c2v9dB_.model.1.pdb
16/01/2012 15:25:22 : INFO  : Building hh.c3n2xB_.model.2.pdb
16/01/2012 15:25:46 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/680ddef5808403e7/hh.c3n2xB_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/680ddef5808403e7/c3n2xB_.2.pdb
16/01/2012 15:25:55 : INFO  : Building c2v9dB_.1.pdb
16/01/2012 15:26:24 : INFO  : Building c3n2xB_.2.pdb
16/01/2012 15:26:54 : INFO  : Building c3g0sA_.3.pdb
16/01/2012 15:27:23 : INFO  : Building d2a6na1.4.pdb
16/01/2012 15:27:54 : INFO  : Building c3si9B_.5.pdb
16/01/2012 15:28:23 : INFO  : Building d1xxxa1.6.pdb
16/01/2012 15:28:52 : INFO  : Building c3fluD_.7.pdb
16/01/2012 15:29:22 : INFO  : Building c3noeA_.8.pdb
16/01/2012 15:29:51 : INFO  : Building c3bi8A_.9.pdb
16/01/2012 15:30:21 : INFO  : Building d1o5ka_.10.pdb
16/01/2012 15:30:51 : INFO  : Building c2ehhE_.11.pdb
16/01/2012 15:31:22 : INFO  : Building c3pueA_.12.pdb
16/01/2012 15:31:53 : INFO  : Building c2r8wB_.13.pdb
16/01/2012 15:32:23 : INFO  : Building d1hl2a_.14.pdb
16/01/2012 15:32:53 : INFO  : Building c3eb2A_.15.pdb
16/01/2012 15:33:24 : INFO  : Building d1xkya1.16.pdb
16/01/2012 15:33:54 : INFO  : Building c2yxgD_.17.pdb
16/01/2012 15:34:22 : INFO  : Building d1f74a_.18.pdb
16/01/2012 15:34:51 : INFO  : Building c3lciA_.19.pdb
16/01/2012 15:35:20 : INFO  : Building c2rfgB_.20.pdb
16/01/2012 15:36:56 : INFO  : Finished HH model building
16/01/2012 15:37:01 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
16/01/2012 15:38:16 : INFO  : html domain output complete ID '680ddef5808403e7'
16/01/2012 16:32:16 : INFO  : Run end  : Mon Jan 16 16:32:14 GMT 2012
