Phyre 2 Results for P0C960

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Email | l.a.kelley@imperial.ac.uk
Description | P0C960
Date | Thu Jan 5 11:30:08 GMT 2012
Unique Job ID | 67b2e1c85b2cb0ac

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c2y8pA_
Top template information
PDB header:lyase Chain: A: PDB Molecule:endo-type membrane-bound lytic murein transglycosylase a; PDBTitle: crystal structure of an outer membrane-anchored endolytic2 peptidoglycan lytic transglycosylase (mlte) from3 escherichia coli
Confidence and coverage
Confidence: | 100.0% | Coverage: | 91%
185 residues ( 91% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | K | L | R | W | F | A | F | L | I | V | L | L | A | G | C | S | S | K | H | D | Y | T | N | P | P | W | N | A | K | V | P | V | Q | R | A | M | Q | W | M | P | I | S | Q | K | A | G | A | A | W | G | V | D | P | Q | L | I | T | A | I
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  | ? | ? | ? | ? | ? |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | I | A | I | E | S | G | G | N | P | N | A | V | S | K | S | N | A | I | G | L | M | Q | L | K | A | S | T | S | G | R | D | V | Y | R | R | M | G | W | S | G | E | P | T | T | S | E | L | K | N | P | E | R | N | I | S | M | G | A | A | Y
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | L | N | I | L | E | T | G | P | L | A | G | I | E | D | P | K | V | L | Q | Y | A | L | V | V | S | Y | A | N | G | A | G | A | L | L | R | T | F | S | S | D | R | K | K | A | I | S | K | I | N | D | L | D | A | D | E | F | L | E | H | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  | ? |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | .
Sequence |  | A | R | N | H | P | A | P | Q | A | P | R | Y | I | Y | K | L | E | Q | A | L | D | A | M
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c2y8pA_ |

### PDB 2y8p chain A

Region: 19 - 203
Aligned: 185
Modelled: 185
Confidence: 100.0%
Identity: 100%
PDB header:lyase
Chain: A: PDB Molecule:endo-type membrane-bound lytic murein transglycosylase a;
PDBTitle: crystal structure of an outer membrane-anchored endolytic2 peptidoglycan lytic transglycosylase (mlte) from3 escherichia coli

Phyre2
2 |
| c1slyA_ |

### PDB 1sly chain A

Region: 39 - 200
Aligned: 143
Modelled: 155
Confidence: 100.0%
Identity: 22%
PDB header:glycosyltransferase
Chain: A: PDB Molecule:70-kda soluble lytic transglycosylase;
PDBTitle: complex of the 70-kda soluble lytic transglycosylase with2 bulgecin a

Phyre2
3 |
| d1qsaa2 |

### PDB 1qsa chain A domain 2

Region: 38 - 201
Aligned: 145
Modelled: 157
Confidence: 100.0%
Identity: 21%
Fold: Lysozyme-like
Superfamily: Lysozyme-like
Family: Bacterial muramidase, catalytic domain

Phyre2
4 |
| c3mgwA_ |

### PDB 3mgw chain A

Region: 29 - 201
Aligned: 135
Modelled: 135
Confidence: 100.0%
Identity: 19%
PDB header:hydrolase
Chain: A: PDB Molecule:lysozyme g;
PDBTitle: thermodynamics and structure of a salmon cold-active goose-type2 lysozyme

Phyre2
5 |
| d1gbsa_ |

### PDB 1gbs chain A

Region: 28 - 201
Aligned: 136
Modelled: 136
Confidence: 100.0%
Identity: 21%
Fold: Lysozyme-like
Superfamily: Lysozyme-like
Family: G-type lysozyme

Phyre2
6 |
| c3gxkB_ |

### PDB 3gxk chain B

Region: 29 - 201
Aligned: 135
Modelled: 135
Confidence: 100.0%
Identity: 18%
PDB header:hydrolase
Chain: B: PDB Molecule:goose-type lysozyme 1;
PDBTitle: the crystal structure of g-type lysozyme from atlantic cod2 (gadus morhua l.) in complex with nag oligomers sheds new3 light on substrate binding and the catalytic mechanism.4 native structure to 1.9

Phyre2
7 |
| d1qusa_ |

### PDB 1qus chain A

Region: 25 - 123
Aligned: 95
Modelled: 99
Confidence: 99.1%
Identity: 24%
Fold: Lysozyme-like
Superfamily: Lysozyme-like
Family: Bacterial muramidase, catalytic domain

Phyre2
8 |
| c3bkhA_ |

### PDB 3bkh chain A

Region: 41 - 168
Aligned: 127
Modelled: 128
Confidence: 99.0%
Identity: 20%
PDB header:hydrolase
Chain: A: PDB Molecule:lytic transglycosylase;
PDBTitle: crystal structure of the bacteriophage phikz lytic2 transglycosylase, gp144

Phyre2
9 |
| c1xsfA_ |

### PDB 1xsf chain A

Region: 51 - 122
Aligned: 67
Modelled: 72
Confidence: 97.4%
Identity: 21%
PDB header:cell cycle, hydrolase
Chain: A: PDB Molecule:probable resuscitation-promoting factor rpfb;
PDBTitle: solution structure of a resuscitation promoting factor2 domain from mycobacterium tuberculosis

Phyre2
10 |
| d1xsfa1 |

### PDB 1xsf chain A domain 1

Region: 52 - 122
Aligned: 66
Modelled: 71
Confidence: 97.2%
Identity: 21%
Fold: Lysozyme-like
Superfamily: Lysozyme-like
Family: RPF-like

Phyre2
11 |
| c3eo5A_ |

### PDB 3eo5 chain A

Region: 58 - 122
Aligned: 60
Modelled: 65
Confidence: 96.6%
Identity: 22%
PDB header:cell adhesion
Chain: A: PDB Molecule:resuscitation-promoting factor rpfb;
PDBTitle: crystal structure of the resuscitation promoting factor rpfb

Phyre2
12 |
| c2fbdB_ |

### PDB 2fbd chain B

Region: 43 - 83
Aligned: 41
Modelled: 41
Confidence: 96.2%
Identity: 32%
PDB header:hydrolase
Chain: B: PDB Molecule:lysozyme 1;
PDBTitle: the crystallographic structure of the digestive lysozyme 1 from musca2 domestica at 1.90 ang.

Phyre2
13 |
| d1gd6a_ |

### PDB 1gd6 chain A

Region: 43 - 83
Aligned: 41
Modelled: 41
Confidence: 96.1%
Identity: 20%
Fold: Lysozyme-like
Superfamily: Lysozyme-like
Family: C-type lysozyme

Phyre2
14 |
| d1iiza_ |

### PDB 1iiz chain A

Region: 43 - 83
Aligned: 41
Modelled: 41
Confidence: 96.1%
Identity: 24%
Fold: Lysozyme-like
Superfamily: Lysozyme-like
Family: C-type lysozyme

Phyre2
15 |
| d1hhla_ |

### PDB 1hhl chain A

Region: 43 - 83
Aligned: 40
Modelled: 41
Confidence: 95.6%
Identity: 25%
Fold: Lysozyme-like
Superfamily: Lysozyme-like
Family: C-type lysozyme

Phyre2
16 |
| d2vb1a1 |

### PDB 2vb1 chain A domain 1

Region: 43 - 83
Aligned: 40
Modelled: 41
Confidence: 95.6%
Identity: 25%
Fold: Lysozyme-like
Superfamily: Lysozyme-like
Family: C-type lysozyme

Phyre2
17 |
| d1ghla_ |

### PDB 1ghl chain A

Region: 43 - 83
Aligned: 40
Modelled: 41
Confidence: 95.5%
Identity: 25%
Fold: Lysozyme-like
Superfamily: Lysozyme-like
Family: C-type lysozyme

Phyre2
18 |
| c3fi7A_ |

### PDB 3fi7 chain A

Region: 34 - 67
Aligned: 34
Modelled: 34
Confidence: 95.3%
Identity: 15%
PDB header:hydrolase
Chain: A: PDB Molecule:lmo1076 protein;
PDBTitle: crystal structure of the autolysin auto (lmo1076) from listeria2 monocytogenes, catalytic domain

Phyre2
19 |
| c2zycA_ |

### PDB 2zyc chain A

Region: 33 - 73
Aligned: 41
Modelled: 41
Confidence: 95.2%
Identity: 22%
PDB header:hydrolase
Chain: A: PDB Molecule:peptidoglycan hydrolase flgj;
PDBTitle: crystal structure of peptidoglycan hydrolase from2 sphingomonas sp. a1

Phyre2
20 |
| d1jsea_ |

### PDB 1jse chain A

Region: 43 - 83
Aligned: 40
Modelled: 41
Confidence: 95.1%
Identity: 23%
Fold: Lysozyme-like
Superfamily: Lysozyme-like
Family: C-type lysozyme

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c2y8pA_ |
|  | 100.0 | 100 | PDB header:lyase Chain: A: PDB Molecule:endo-type membrane-bound lytic murein transglycosylase a; PDBTitle: crystal structure of an outer membrane-anchored endolytic2 peptidoglycan lytic transglycosylase (mlte) from3 escherichia coli
2 | c1slyA_ |
|  | 100.0 | 22 | PDB header:glycosyltransferase Chain: A: PDB Molecule:70-kda soluble lytic transglycosylase; PDBTitle: complex of the 70-kda soluble lytic transglycosylase with2 bulgecin a
3 | d1qsaa2 |
|  | 100.0 | 21 | Fold:Lysozyme-like Superfamily:Lysozyme-like Family:Bacterial muramidase, catalytic domain
4 | c3mgwA_ |
|  | 100.0 | 19 | PDB header:hydrolase Chain: A: PDB Molecule:lysozyme g; PDBTitle: thermodynamics and structure of a salmon cold-active goose-type2 lysozyme
5 | d1gbsa_ |
|  | 100.0 | 21 | Fold:Lysozyme-like Superfamily:Lysozyme-like Family:G-type lysozyme
6 | c3gxkB_ |
|  | 100.0 | 18 | PDB header:hydrolase Chain: B: PDB Molecule:goose-type lysozyme 1; PDBTitle: the crystal structure of g-type lysozyme from atlantic cod2 (gadus morhua l.) in complex with nag oligomers sheds new3 light on substrate binding and the catalytic mechanism.4 native structure to 1.9
7 | d1qusa_ |
|  | 99.1 | 24 | Fold:Lysozyme-like Superfamily:Lysozyme-like Family:Bacterial muramidase, catalytic domain
8 | c3bkhA_ |
|  | 99.0 | 20 | PDB header:hydrolase Chain: A: PDB Molecule:lytic transglycosylase; PDBTitle: crystal structure of the bacteriophage phikz lytic2 transglycosylase, gp144
9 | c1xsfA_ |
|  | 97.4 | 21 | PDB header:cell cycle, hydrolase Chain: A: PDB Molecule:probable resuscitation-promoting factor rpfb; PDBTitle: solution structure of a resuscitation promoting factor2 domain from mycobacterium tuberculosis
10 | d1xsfa1 |
|  | 97.2 | 21 | Fold:Lysozyme-like Superfamily:Lysozyme-like Family:RPF-like
11 | c3eo5A_ |
|  | 96.6 | 22 | PDB header:cell adhesion Chain: A: PDB Molecule:resuscitation-promoting factor rpfb; PDBTitle: crystal structure of the resuscitation promoting factor rpfb
12 | c2fbdB_ |
|  | 96.2 | 32 | PDB header:hydrolase Chain: B: PDB Molecule:lysozyme 1; PDBTitle: the crystallographic structure of the digestive lysozyme 1 from musca2 domestica at 1.90 ang.
13 | d1gd6a_ |
|  | 96.1 | 20 | Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme
14 | d1iiza_ |
|  | 96.1 | 24 | Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme
15 | d1hhla_ |
|  | 95.6 | 25 | Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme
16 | d2vb1a1 |
|  | 95.6 | 25 | Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme
17 | d1ghla_ |
|  | 95.5 | 25 | Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme
18 | c3fi7A_ |
|  | 95.3 | 15 | PDB header:hydrolase Chain: A: PDB Molecule:lmo1076 protein; PDBTitle: crystal structure of the autolysin auto (lmo1076) from listeria2 monocytogenes, catalytic domain
19 | c2zycA_ |
|  | 95.2 | 22 | PDB header:hydrolase Chain: A: PDB Molecule:peptidoglycan hydrolase flgj; PDBTitle: crystal structure of peptidoglycan hydrolase from2 sphingomonas sp. a1
20 | d1jsea_ |
|  | 95.1 | 23 | Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme
21 | c3ct5A_ |
| not modelled | 95.1 | 17 | PDB header:hydrolase Chain: A: PDB Molecule:morphogenesis protein 1; PDBTitle: crystal and cryoem structural studies of a cell wall degrading enzyme2 in the bacteriophage phi29 tail
22 | d1lmqa_ |
| not modelled | 95.1 | 30 | Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme
23 | c2goiC_ |
| not modelled | 95.0 | 30 | PDB header:cell adhesion, sugar binding protein Chain: C: PDB Molecule:sperm lysozyme-like protein 1; PDBTitle: crystal structure of mouse sperm c-type lysozyme-like2 protein 1
24 | d1qqya_ |
| not modelled | 94.9 | 25 | Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme
25 | d1juga_ |
| not modelled | 94.8 | 28 | Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme
26 | c2z2fA_ |
| not modelled | 94.7 | 20 | PDB header:hydrolase Chain: A: PDB Molecule:lysozyme c-2; PDBTitle: x-ray crystal structure of bovine stomach lysozyme
27 | d1lsga1 |
| not modelled | 94.5 | 24 | Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme
28 | d1ivma_ |
| not modelled | 94.5 | 18 | Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme
29 | d2nwdx1 |
| not modelled | 93.8 | 23 | Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme
30 | d1f6sa_ |
| not modelled | 92.5 | 28 | Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme
31 | d2eqla_ |
| not modelled | 92.5 | 34 | Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme
32 | d1b9oa_ |
| not modelled | 92.3 | 31 | Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme
33 | d1yroa1 |
| not modelled | 91.9 | 31 | Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme
34 | d1hfxa_ |
| not modelled | 91.9 | 38 | Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme
35 | d1fkqa_ |
| not modelled | 91.3 | 28 | Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme
36 | d1alca_ |
| not modelled | 90.3 | 31 | Fold:Lysozyme-like Superfamily:Lysozyme-like Family:C-type lysozyme
37 | c3csqC_ |
| not modelled | 80.4 | 18 | PDB header:hydrolase Chain: C: PDB Molecule:morphogenesis protein 1; PDBTitle: crystal and cryoem structural studies of a cell wall2 degrading enzyme in the bacteriophage phi29 tail
38 | d1nvma1 |
| not modelled | 34.0 | 15 | Fold:RuvA C-terminal domain-like Superfamily:post-HMGL domain-like Family:DmpG/LeuA communication domain-like
39 | d1idra_ |
| not modelled | 29.8 | 16 | Fold:Globin-like Superfamily:Globin-like Family:Truncated hemoglobin
40 | d1yt3a2 |
| not modelled | 21.8 | 4 | Fold:SAM domain-like Superfamily:HRDC-like Family:RNase D C-terminal domains
41 | d2coba1 |
| not modelled | 15.0 | 17 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Psq domain
42 | c3aq8A_ |
| not modelled | 9.2 | 14 | PDB header:oxygen binding Chain: A: PDB Molecule:group 1 truncated hemoglobin; PDBTitle: crystal structure of truncated hemoglobin from tetrahymena pyriformis,2 q46e mutant, fe(iii) form
43 | c2l5qA_ |
| not modelled | 9.0 | 23 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of bvu_3817 from bacteroides vulgatus,2 northeast structural genomics consortium target bvr159
44 | d2cvza1 |
| not modelled | 8.7 | 22 | Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
45 | d1dlwa_ |
| not modelled | 8.3 | 19 | Fold:Globin-like Superfamily:Globin-like Family:Truncated hemoglobin
46 | c1mgtA_ |
| not modelled | 7.1 | 16 | PDB header:transferase Chain: A: PDB Molecule:protein (o6-methylguanine-dna methyltransferase); PDBTitle: crystal structure of o6-methylguanine-dna methyltransferase from2 hyperthermophilic archaeon pyrococcus kodakaraensis strain kod1
47 | d1a5za1 |
| not modelled | 6.7 | 13 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like
48 | d2fnoa1 |
| not modelled | 6.2 | 32 | Fold:GST C-terminal domain-like Superfamily:GST C-terminal domain-like Family:Glutathione S-transferase (GST), C-terminal domain
49 | d2fp1a1 |
| not modelled | 5.8 | 17 | Fold:Chorismate mutase II Superfamily:Chorismate mutase II Family:Secreted chorismate mutase-like
50 | d1bw6a_ |
| not modelled | 5.3 | 10 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Centromere-binding

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0