Phyre 2 alignment of P0C960 with c2goiC_

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Job Description | P0C960
Confidence | 94.99% | Date | Thu Jan 5 11:30:08 GMT 2012
Rank | 23 | Aligned Residues | 40
% Identity | 30% | Template | c2goiC_
PDB info | PDB header:cell adhesion, sugar binding protein | Chain: C: PDB Molecule:sperm lysozyme-like protein 1; | PDBTitle: crystal structure of mouse sperm c-type lysozyme-like2 protein 1
Resolution | 2.30 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 43 | . | . | . | . | . | . | 50 | . | . | . |  |  |  |  |  |  |  | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . |  |  |  |  | . | . | . | . | . | 80 | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |
Query Sequence |  | S | Q | K | A | G | A | A | W | G | V | D | . | . | . | . | . | . | . | P | Q | L | I | T | A | I | I | A | I | E | S | G | G | N | P | N | A | V | S | K | . | . | . | . | S | N | A | I | G | L | M | Q | L
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | L | A | K | E | M | H | D | F | G | L | D | G | Y | R | G | Y | N | L | A | D | W | V | C | . | L | A | Y | Y | T | S | G | F | N | T | N | A | V | D | H | E | A | D | G | S | T | N | N | G | I | F | Q | I
Template Known Secondary structure |  |  |  |  |  |  |  |  | T | T |  | T | T | G | G | G |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  | T | T | B | T | T |  |  |  |  |  | T | T | S |  |  |  |  | T | T | T | T |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . |  | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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