BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (242 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P63202 HTH-type transcriptional regulator gadW n=57 Tax... 500 e-140 UniRef50_B7LQH4 GadW HTH-type(AraC-type) transcriptional positiv... 307 2e-82 UniRef50_P05052 HTH-type transcriptional regulator appY n=6 Tax=... 167 4e-40 UniRef50_B7M6J8 Putative AraC-type regulatory protein encoded in... 141 1e-32 UniRef50_C6UHW7 Putative AraC-type regulatory protein encoded in... 141 2e-32 UniRef50_Q83RF4 HTH-type transcriptional regulator ydeO n=59 Tax... 134 4e-30 UniRef50_A7ZH67 HTH-type transcriptional regulator YdeO n=2 Tax=... 133 6e-30 UniRef50_Q93SE2 Putative uncharacterized protein n=1 Tax=Escheri... 126 6e-28 UniRef50_C6UPG2 Putative envelope protein encoded within prophag... 124 2e-27 UniRef50_Q9EYV5 HTH-type transcriptional regulator gadX n=60 Tax... 92 1e-17 UniRef50_P41782 Transcriptional regulator hilD n=38 Tax=Salmonel... 87 5e-16 UniRef50_Q8GA53 Putative CS12 fimbrial-like upstream regulatory ... 87 6e-16 UniRef50_P33234 HTH-type transcriptional regulator adiY n=102 Ta... 87 7e-16 UniRef50_B7LQH5 HTH-type transcriptional regulator gadX for glut... 86 1e-15 UniRef50_A6AXU3 Transcriptional regulator, AraC family protein n... 85 2e-15 UniRef50_P43459 Transcriptional activator perA n=24 Tax=Escheric... 85 2e-15 UniRef50_P10805 Porin thermoregulatory protein envY n=41 Tax=Ent... 84 5e-15 UniRef50_P23774 987P fimbrial operon positive regulatory protein... 83 6e-15 UniRef50_B5R1L9 Fimbrial operon positive regulatory protein n=11... 82 1e-14 UniRef50_A7ZGX7 Transcriptional regulator, AraC family n=1 Tax=E... 82 1e-14 UniRef50_D2TIS0 Transcriptional regulator of virulence RegA n=5 ... 82 2e-14 UniRef50_B5FRI8 AraC family regulatory protein n=32 Tax=Enteroba... 81 4e-14 UniRef50_P0A2T2 Virulence regulon transcriptional activator virF... 76 1e-12 UniRef50_A7XY51 LngS n=3 Tax=Enterobacteriaceae RepID=A7XY51_ECOLX 76 1e-12 UniRef50_Q8GA34 AraC-like transcriptional regulator n=2 Tax=Esch... 76 1e-12 UniRef50_P32326 Urease operon transcriptional activator n=12 Tax... 75 2e-12 UniRef50_Q2BYZ8 Transcriptional regulator, AraC family protein n... 75 2e-12 UniRef50_A2PNS5 Transcriptional regulator, AraC family protein n... 75 2e-12 UniRef50_Q04819 ORF11 n=5 Tax=Salmonella enterica subsp. enteric... 75 2e-12 UniRef50_D0YX71 Transcriptional regulator AraC family protein n=... 75 2e-12 UniRef50_P43460 HTH-type transcriptional activator csvR n=12 Tax... 74 3e-12 UniRef50_Q8Z4A6 Transcriptional regulator sirC n=36 Tax=Salmonel... 74 4e-12 UniRef50_A4TK67 Transcriptional regulator, AraC family n=35 Tax=... 72 2e-11 UniRef50_A6B243 Transcriptional activator of virulence loci n=4 ... 72 2e-11 UniRef50_Q21KL2 Transcriptional regulator, AraC family n=5 Tax=P... 71 4e-11 UniRef50_A6T768 Bacterial regulatory protein, AraC family n=48 T... 70 7e-11 UniRef50_Q2SCQ2 AraC-type DNA-binding domain-containing protein ... 70 8e-11 UniRef50_Q7NTA1 Putative uncharacterized protein n=1 Tax=Chromob... 70 8e-11 UniRef50_A9MGM0 Putative uncharacterized protein n=1 Tax=Salmone... 69 1e-10 UniRef50_Q2S8T9 AraC-type DNA-binding domain-containing protein ... 69 1e-10 UniRef50_A6B6J4 Putative CFA/I fimbrial subunit D n=2 Tax=Vibrio... 69 2e-10 UniRef50_C5BFY6 Transcriptional regulator, AraC family protein n... 67 8e-10 UniRef50_B6BG36 Transcriptional Regulator, AraC family, putative... 65 2e-09 UniRef50_B8KKU1 Transcriptional regulator OruR n=1 Tax=gamma pro... 65 2e-09 UniRef50_C4GLE7 Putative uncharacterized protein n=1 Tax=Kingell... 64 4e-09 UniRef50_C4G6T3 Putative uncharacterized protein n=1 Tax=Abiotro... 63 7e-09 UniRef50_Q0B4N6 Transcriptional regulator, AraC family n=16 Tax=... 63 8e-09 UniRef50_B9LZS6 Transcriptional regulator, AraC family n=1 Tax=G... 63 8e-09 UniRef50_A5F384 TCP pilus virulence regulatory protein n=21 Tax=... 63 1e-08 UniRef50_C4T4E3 AraC-type DNA-binding domain-containing protein ... 62 1e-08 UniRef50_Q65QI0 AraC protein n=1 Tax=Mannheimia succiniciproduce... 62 2e-08 UniRef50_C0EGI7 Putative uncharacterized protein n=1 Tax=Clostri... 62 2e-08 UniRef50_D2YK24 Type 4 prepilin-like protein leader peptide-proc... 61 3e-08 UniRef50_B6RAA0 Transcriptional regulator, AraC family n=4 Tax=A... 61 3e-08 UniRef50_B5ZYE2 Transcriptional regulator, AraC family n=12 Tax=... 61 3e-08 UniRef50_A6WTM9 Helix-turn-helix-domain containing protein AraC ... 60 5e-08 UniRef50_B4SIX4 Transcriptional regulator, AraC family n=3 Tax=X... 60 7e-08 UniRef50_Q39HU5 Transcriptional regulator, AraC family n=1 Tax=B... 60 8e-08 UniRef50_B1XIJ2 Two-component response regulator n=2 Tax=Synecho... 59 1e-07 UniRef50_A9ACW6 AraC family transcriptional regulator n=3 Tax=Bu... 59 1e-07 UniRef50_B4X4X5 Transcriptional regulator, AraC family protein n... 59 1e-07 UniRef50_D0SJB7 Predicted protein n=1 Tax=Acinetobacter junii SH... 59 1e-07 UniRef50_B4X435 Transcriptional regulator, AraC family protein n... 59 2e-07 UniRef50_A0Z3Z2 Transcriptional regulator, AraC family protein n... 59 2e-07 UniRef50_B9K5W8 Transcriptional regulatory protein n=1 Tax=Agrob... 58 3e-07 UniRef50_A3JHC0 Transcriptional regulator, AraC family protein n... 58 3e-07 UniRef50_A0KMW4 Transcriptional regulator, AraC/XylS family n=2 ... 58 3e-07 UniRef50_Q8RSF6 Putative transcriptional regulator protein n=2 T... 58 3e-07 UniRef50_A9GN71 Tra n=1 Tax=Sorangium cellulosum 'So ce 56' RepI... 58 4e-07 UniRef50_D0KCL6 Transcriptional regulator, AraC family n=5 Tax=P... 57 6e-07 UniRef50_A4BJM9 Putative uncharacterized protein n=1 Tax=Reineke... 57 6e-07 UniRef50_D1RT58 Transcriptional regulatory protein n=1 Tax=Serra... 57 7e-07 UniRef50_A3J4H6 Two-component system sensor histidine kinase/res... 56 8e-07 UniRef50_A6GLT9 Transcriptional regulator, AraC family protein n... 56 9e-07 UniRef50_D1PKE0 Transcriptional regulator, AraC/XylS family n=1 ... 56 9e-07 UniRef50_A6Y0W0 AraC-type DNA-binding domain-containing protein ... 56 9e-07 UniRef50_UPI0001C35C05 AraC family transcriptional regulator n=1... 56 1e-06 UniRef50_A9ETR6 AraC-type DNA-binding domain-containing protein ... 56 1e-06 UniRef50_A4XTI6 Transcriptional regulator, AraC family n=6 Tax=P... 55 1e-06 UniRef50_Q1ZU86 Putative CFA/I fimbrial subunit D n=1 Tax=Photob... 55 1e-06 UniRef50_A6GMI7 Putative transcriptional regulator, AraC family ... 55 2e-06 UniRef50_A5TXQ0 Possible AraC family transcriptional regulator n... 55 2e-06 UniRef50_B6XD52 Putative uncharacterized protein n=2 Tax=Provide... 55 2e-06 UniRef50_C0VNX7 AraC family transcriptional regulator n=1 Tax=Ac... 55 2e-06 UniRef50_B7S017 Transcriptional regulator, AraC family n=1 Tax=m... 55 2e-06 UniRef50_Q2RVL5 Transcriptional regulator, AraC family n=2 Tax=A... 55 2e-06 UniRef50_A9GK63 Transcriptional regulator, AraC family n=1 Tax=S... 55 2e-06 UniRef50_A6CLV0 AraC-type DNA-binding domain-containing protein ... 55 2e-06 UniRef50_C4UFJ5 Uncharacterized HTH-type transcriptional regulat... 55 2e-06 UniRef50_UPI0001C372DF arabinogalactan endo-1,4-beta-galactosida... 55 2e-06 UniRef50_Q88C44 Transcriptional regulator, AraC family n=16 Tax=... 55 3e-06 UniRef50_UPI0000F30067 putative transcriptional regulator AraC/X... 55 3e-06 UniRef50_UPI0001851370 two component AraC family transcriptional... 55 3e-06 UniRef50_C4L2Y3 Two component transcriptional regulator, AraC fa... 55 3e-06 UniRef50_B2I0Q2 AraC-type DNA-binding domain-containing protein ... 55 3e-06 UniRef50_C5EIB6 Transcriptional regulator n=3 Tax=Clostridiales ... 54 3e-06 UniRef50_D0Z2K1 Transcriptional regulator AraC family n=1 Tax=Ph... 54 3e-06 UniRef50_C8Q2W3 Transcriptional regulator, AraC family n=1 Tax=P... 54 3e-06 UniRef50_Q9Z3Q6 Transcriptional activator rhrA n=1 Tax=Sinorhizo... 54 3e-06 UniRef50_A9F3N3 Probable transcriptional regulator n=1 Tax=Phaeo... 54 4e-06 UniRef50_A3M7C3 Putative transcriptional regulator (AraC family)... 54 4e-06 UniRef50_C1DBS2 AraC-type DNA-binding domain-containing protein ... 54 4e-06 UniRef50_UPI0001AF3354 AraC family transcriptional regulator n=1... 54 4e-06 UniRef50_A6X415 Helix-turn-helix-domain containing protein AraC ... 54 4e-06 UniRef50_C6CFN8 Transcriptional regulator, AraC family n=1 Tax=D... 54 4e-06 UniRef50_D1SRG9 Transcriptional regulator, AraC family n=1 Tax=A... 54 4e-06 UniRef50_A5VDX1 Transcriptional regulator, AraC family n=1 Tax=S... 54 4e-06 UniRef50_A1TWU6 Transcriptional regulator, AraC family n=2 Tax=M... 54 4e-06 UniRef50_A8KZG5 Transcriptional regulator, AraC family n=9 Tax=A... 54 5e-06 UniRef50_B5JUK1 AraC-type DNA-binding domain-containing protein ... 54 5e-06 UniRef50_UPI0001C37E0B transcriptional regulator, LacI family pr... 54 6e-06 UniRef50_Q5DYZ5 Transcriptional regulatory protein, AraC-like pr... 54 6e-06 UniRef50_D0BWN3 Transcriptional regulator n=1 Tax=Acinetobacter ... 54 7e-06 UniRef50_C9RT55 Two component transcriptional regulator, AraC fa... 54 7e-06 UniRef50_A7MK74 Putative uncharacterized protein n=2 Tax=Enterob... 53 7e-06 UniRef50_A8SQM8 Putative uncharacterized protein n=3 Tax=Clostri... 53 7e-06 UniRef50_Q4KDB9 Transcriptional regulator, AraC family n=1 Tax=P... 53 7e-06 UniRef50_C9Y4B2 Putative uncharacterized protein n=1 Tax=Cronoba... 53 7e-06 UniRef50_Q1QJK3 Transcriptional regulator, AraC family n=1 Tax=N... 53 8e-06 UniRef50_Q1N6M1 Probable transcriptional regulator n=1 Tax=Berma... 53 8e-06 UniRef50_B8KNS6 Transcriptional regulator, AraC family n=1 Tax=g... 53 8e-06 UniRef50_A8I129 Transcriptional regulatory protein n=1 Tax=Azorh... 53 8e-06 UniRef50_C6CVC0 Two component transcriptional regulator, AraC fa... 53 9e-06 UniRef50_B1YT91 Transcriptional regulator, AraC family n=2 Tax=B... 53 9e-06 UniRef50_C0EIY2 Putative uncharacterized protein n=1 Tax=Clostri... 53 9e-06 UniRef50_B5JTW9 Helix-turn-helix-domain containing protein, AraC... 53 1e-05 UniRef50_Q1GHD7 Transcriptional regulator, AraC family n=2 Tax=R... 53 1e-05 UniRef50_C6CT66 Two component transcriptional regulator, AraC fa... 53 1e-05 UniRef50_C3K2A2 Putative putative AraC-family regulatory protein... 53 1e-05 UniRef50_UPI0001C379B1 transcriptional regulator, AraC family pr... 53 1e-05 UniRef50_Q5DYJ4 Transcriptional regulator, AraC family n=1 Tax=V... 52 1e-05 UniRef50_A6FAQ6 Probable transcriptional regulator n=1 Tax=Morit... 52 1e-05 UniRef50_C9Z0D8 Arabinose operon regulatory protein n=2 Tax=Stre... 52 1e-05 UniRef50_C4STM8 Transcriptional regulator containing an amidase ... 52 1e-05 UniRef50_C9L8L2 Transcriptional regulator, AraC family n=2 Tax=C... 52 1e-05 UniRef50_C6JC64 Two component transcriptional regulator n=1 Tax=... 52 1e-05 UniRef50_Q2RW15 Transcriptional regulator, AraC family n=1 Tax=R... 52 1e-05 UniRef50_Q1R0K4 Transcriptional regulator, AraC family n=1 Tax=C... 52 1e-05 UniRef50_B2ICW5 Transcriptional regulator, AraC family n=1 Tax=B... 52 1e-05 UniRef50_Q03Q27 Transcriptional regulator, AraC family n=1 Tax=L... 52 1e-05 UniRef50_C5T089 Transcriptional regulator, AraC family n=1 Tax=A... 52 1e-05 UniRef50_UPI0001693CE5 response regulator receiver protein n=1 T... 52 2e-05 UniRef50_A8H057 Transcriptional regulator, AraC family n=2 Tax=S... 52 2e-05 UniRef50_D0LMC0 Transcriptional regulator, AraC family n=1 Tax=H... 52 2e-05 UniRef50_B5XWK6 Transcriptional regulator, AraC family n=5 Tax=K... 52 2e-05 UniRef50_Q65NG7 Putative uncharacterized protein n=1 Tax=Bacillu... 52 2e-05 UniRef50_Q9KFJ6 Transcriptional regulator (AraC/XylS family) n=2... 52 2e-05 UniRef50_C4V4H7 Response regulator n=1 Tax=Selenomonas flueggei ... 52 2e-05 UniRef50_C6CT05 Two component transcriptional regulator, AraC fa... 52 2e-05 UniRef50_Q0TS33 Transcriptional regulator, AraC family n=6 Tax=C... 52 2e-05 UniRef50_UPI0001C3522D two-component system, response regulator ... 52 2e-05 UniRef50_Q1LBV4 Transcriptional regulator, AraC family n=1 Tax=C... 52 2e-05 UniRef50_Q2SUV3 Transcriptional regulator, AraC family n=34 Tax=... 52 2e-05 UniRef50_C4G5Y3 Putative uncharacterized protein n=1 Tax=Abiotro... 52 2e-05 UniRef50_Q7MJE3 AraC-type DNA-binding domain-containing protein ... 52 2e-05 UniRef50_C4Z3B2 Two-component system, response regulator YesN n=... 52 2e-05 UniRef50_Q3KCK4 Putative transcriptional Regulator, AraC family ... 52 3e-05 UniRef50_Q21JI5 Transcriptional regulator, AraC family n=1 Tax=S... 51 3e-05 UniRef50_A4BBD9 Transcriptional regulator, AraC family protein n... 51 3e-05 UniRef50_B8IE97 Transcriptional regulator, AraC family n=2 Tax=M... 51 3e-05 UniRef50_A4XWL1 Transcriptional regulator, AraC family n=5 Tax=B... 51 3e-05 UniRef50_C2LMQ1 Virulence regulon transcriptional activator VirF... 51 3e-05 UniRef50_C4TV58 Transcriptional regulator containing an amidase ... 51 3e-05 UniRef50_C0X2X9 AraC family transcriptional regulator n=22 Tax=E... 51 3e-05 UniRef50_B2HXY7 AraC-type DNA-binding domain-containing protein ... 51 3e-05 UniRef50_B8FMW7 Transcriptional regulator, AraC family n=1 Tax=D... 51 3e-05 UniRef50_B7RZI3 Transcriptional regulator, AraC family n=1 Tax=m... 51 3e-05 UniRef50_UPI0001788EC5 two component transcriptional regulator, ... 51 3e-05 UniRef50_Q1GDX2 Transcriptional regulator, AraC family n=2 Tax=R... 51 3e-05 UniRef50_Q7CUB1 Transcriptional regulator, AraC family n=1 Tax=A... 51 3e-05 UniRef50_C0EDW5 Putative uncharacterized protein n=1 Tax=Clostri... 51 3e-05 UniRef50_A1WHE5 Transcriptional regulator, AraC family n=2 Tax=C... 51 3e-05 UniRef50_C6AKL4 Histidine kinase n=2 Tax=Aggregatibacter RepID=C... 51 3e-05 UniRef50_C4G4K9 Putative uncharacterized protein n=1 Tax=Abiotro... 51 3e-05 UniRef50_B5XTB5 Transcriptional regulator, AraC family n=5 Tax=K... 51 3e-05 UniRef50_D0GMR1 Transcriptional regulator, AraC family n=1 Tax=L... 51 3e-05 UniRef50_A5ZT85 Putative uncharacterized protein n=1 Tax=Ruminoc... 51 4e-05 UniRef50_UPI0001C36780 two component transcriptional regulator, ... 51 4e-05 UniRef50_UPI000178A140 two component transcriptional regulator, ... 51 4e-05 UniRef50_C6J1Q8 Two component transcriptional regulator n=1 Tax=... 51 4e-05 UniRef50_C6CXP8 Transcriptional regulator, AraC family n=1 Tax=P... 51 4e-05 UniRef50_C6CEQ2 Transcriptional regulator, AraC family n=2 Tax=D... 51 4e-05 UniRef50_A4Y0S8 Transcriptional regulator, AraC family n=1 Tax=P... 51 4e-05 UniRef50_B4X5H8 Transcriptional regulator, AraC family protein n... 51 4e-05 UniRef50_A5W7M3 Transcriptional regulator, AraC family n=3 Tax=P... 51 4e-05 UniRef50_A5VMB5 Transcriptional regulator, AraC family n=7 Tax=L... 50 5e-05 UniRef50_A3DHR0 Transcriptional regulator, AraC family n=3 Tax=C... 50 5e-05 UniRef50_C0C262 Putative uncharacterized protein n=2 Tax=Clostri... 50 5e-05 UniRef50_B5GZF8 Transcriptional regulator n=1 Tax=Streptomyces c... 50 5e-05 UniRef50_D0KWJ3 Transcriptional regulator, AraC family n=1 Tax=H... 50 5e-05 UniRef50_B2U5Z6 Transcriptional regulator, AraC family protein n... 50 5e-05 UniRef50_D1AA08 Transcriptional regulator, AraC family n=18 Tax=... 50 5e-05 UniRef50_UPI000178A084 two component transcriptional regulator, ... 50 5e-05 UniRef50_UPI0001C37D6C ggdef domain n=1 Tax=Ruminococcus flavefa... 50 5e-05 UniRef50_C4G7K2 Putative uncharacterized protein n=1 Tax=Abiotro... 50 6e-05 UniRef50_A5VW33 Transcriptional regulator, AraC family n=36 Tax=... 50 6e-05 UniRef50_A5F2L6 Transcriptional regulator, AraC/XylS family n=33... 50 6e-05 UniRef50_A9AT03 Transcriptional regulator, AraC family n=13 Tax=... 50 6e-05 UniRef50_A6TTD1 Response regulator receiver protein n=3 Tax=Firm... 50 7e-05 UniRef50_D0KWJ8 Transcriptional regulator, AraC family n=1 Tax=H... 50 7e-05 UniRef50_B2HYH2 AraC-type DNA-binding domain-containing protein ... 50 7e-05 UniRef50_A6B9M2 Transcriptional regulator, AraC/XylS family (Fra... 50 7e-05 UniRef50_C6D427 Two component transcriptional regulator, AraC fa... 50 8e-05 UniRef50_A6F6Z7 Probable transcriptional regulator n=1 Tax=Morit... 50 8e-05 UniRef50_B3EYL7 Two-component response regulator n=5 Tax=Firmicu... 50 8e-05 UniRef50_UPI0001BC2F1F 2-isopropylmalate synthase n=1 Tax=Butyri... 50 8e-05 UniRef50_C7PQL4 Transcriptional regulator, AraC family n=1 Tax=C... 50 8e-05 UniRef50_B0KIB9 Transcriptional regulator, AraC family n=17 Tax=... 50 8e-05 UniRef50_B4X0B5 Transcriptional regulator, AraC family protein n... 50 9e-05 UniRef50_A2TY79 Transcription regulator, AraC family n=1 Tax=Pol... 50 9e-05 UniRef50_D1N500 Transcriptional regulator, AraC family n=1 Tax=V... 50 1e-04 UniRef50_A6G2V5 Transcriptional Regulator, AraC family protein n... 50 1e-04 UniRef50_C2BXH0 Response regulator n=1 Tax=Listeria grayi DSM 20... 50 1e-04 UniRef50_Q2BIB0 Putative uncharacterized protein n=1 Tax=Neptuni... 49 1e-04 UniRef50_A7K218 Transcriptional regulator AraC/XylS family n=5 T... 49 1e-04 UniRef50_Q7NVM9 Probable transcriptional regulator, AraC family ... 49 1e-04 UniRef50_D1UPU4 Transcriptional regulator, AraC family n=1 Tax=B... 49 1e-04 UniRef50_C6IWZ0 Two component transcriptional regulator n=1 Tax=... 49 1e-04 UniRef50_C0VLH8 AraC family transcriptional regulator n=1 Tax=Ac... 49 1e-04 UniRef50_C7IE87 Transcriptional regulator, AraC family n=1 Tax=C... 49 1e-04 UniRef50_C0CWR9 Putative uncharacterized protein n=1 Tax=Clostri... 49 1e-04 UniRef50_B7S1R2 Transcriptional regulator, AraC family n=1 Tax=m... 49 1e-04 UniRef50_A4SN34 Transcriptional regulator, AraC family n=2 Tax=A... 49 1e-04 UniRef50_Q05587 Regulatory protein pocR n=57 Tax=Gammaproteobact... 49 1e-04 UniRef50_Q7MEL5 AraC-type DNA-binding domain-containing protein ... 49 1e-04 UniRef50_B2GEN0 Transcriptional regulator n=1 Tax=Lactobacillus ... 49 1e-04 UniRef50_C6PV52 Transcriptional regulator, AraC family n=1 Tax=C... 49 1e-04 UniRef50_C0D9A6 Putative uncharacterized protein n=1 Tax=Clostri... 49 1e-04 UniRef50_Q0VP70 Transcriptional regulator, AraC family n=2 Tax=A... 49 1e-04 UniRef50_C9PGE8 Transcriptional regulator AraC family n=1 Tax=Vi... 49 1e-04 UniRef50_B3PI13 Transcriptional regulator, AraC family domain pr... 49 1e-04 UniRef50_C6D7X2 Two component transcriptional regulator, AraC fa... 49 1e-04 UniRef50_B0K339 Response regulator receiver protein n=9 Tax=Ther... 49 1e-04 UniRef50_B4WYI1 Transcriptional regulator, AraC family protein n... 49 1e-04 UniRef50_A0P1V7 Helix-turn-helix, AraC type protein n=1 Tax=Labr... 49 1e-04 UniRef50_Q8EPK8 Transcriptional regulator (AraC/XylS family) n=1... 49 1e-04 UniRef50_Q5WCV1 AraC/XylS family transcriptional regulator n=1 T... 49 1e-04 UniRef50_C0EDG6 Putative uncharacterized protein (Fragment) n=1 ... 49 1e-04 UniRef50_A6NS86 Putative uncharacterized protein n=1 Tax=Bactero... 49 1e-04 UniRef50_C6VTG9 Transcriptional regulator, AraC family n=1 Tax=D... 49 1e-04 UniRef50_C3NW60 Transcriptional regulator AraC/XylS family n=8 T... 49 1e-04 UniRef50_C0A2N9 AraC-type DNA-binding domain-containing protein-... 49 1e-04 UniRef50_Q885H7 Transcriptional regulator, AraC family n=5 Tax=c... 49 1e-04 UniRef50_A7M665 Sensor protein n=5 Tax=Bacteroides RepID=A7M665_... 49 1e-04 UniRef50_B9L6G8 Transcriptional regulator n=1 Tax=Nautilia profu... 49 1e-04 UniRef50_C9PCW6 Putative transcriptional regulator AraC/XylS fam... 49 1e-04 UniRef50_A0KLP7 Transcriptional regulator, AraC family protein n... 49 1e-04 UniRef50_B7AP83 Putative uncharacterized protein n=1 Tax=Bactero... 49 1e-04 UniRef50_B1R1I5 Transcriptional regulator, AraC family n=2 Tax=C... 49 1e-04 UniRef50_C6CT15 Two component transcriptional regulator, AraC fa... 49 1e-04 >UniRef50_P63202 HTH-type transcriptional regulator gadW n=57 Tax=Enterobacteriaceae RepID=GADW_ECO57 Length = 242 Score = 500 bits (1287), Expect = e-140, Method: Compositional matrix adjust. Identities = 242/242 (100%), Positives = 242/242 (100%) Query: 1 MTHVCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCH 60 MTHVCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCH Sbjct: 1 MTHVCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCH 60 Query: 61 YLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMF 120 YLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMF Sbjct: 61 YLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMF 120 Query: 121 SHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCF 180 SHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCF Sbjct: 121 SHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCF 180 Query: 181 SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGT 240 SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGT Sbjct: 181 SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGT 240 Query: 241 FS 242 FS Sbjct: 241 FS 242 >UniRef50_B7LQH4 GadW HTH-type(AraC-type) transcriptional positive regulator of gadA and gadBC, in absence of gadX; repressor of gadX n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LQH4_ESCF3 Length = 245 Score = 307 bits (786), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 149/241 (61%), Positives = 189/241 (78%) Query: 1 MTHVCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCH 60 M HVCSV+L+ RS DIY+E++ +++ +S++L+++ LA R L+IDE V + Sbjct: 1 MAHVCSVVLVCRSLDIYYEKKHLNIIKDSLILMDEKLAFRIPHNCSWVRSLEIDECIVSN 60 Query: 61 YLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMF 120 YLQ+IR + G H++ RLLIN PP+PLV AIFDSF+ + +P LSNMLY SCLS+F Sbjct: 61 YLQHIRHPAQYSGKHTRHRLLINHQPPLPLVRAIFDSFDAAETLTPTLSNMLYFSCLSLF 120 Query: 121 SHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCF 180 S EL+PLLFNSI+T+SGKVER+IS D ++RWYLRD+AE++YTSESLIKKKLQDENT F Sbjct: 121 SMHDELVPLLFNSINTLSGKVERIISVDTSRRWYLRDVAEKLYTSESLIKKKLQDENTSF 180 Query: 181 SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGT 240 SKILLASRM+ A+ LLEL Q+PL IAEKCGYSSTSYFINTFRQYYGVTPHQ++ S + Sbjct: 181 SKILLASRMARAKTLLELNQMPLTVIAEKCGYSSTSYFINTFRQYYGVTPHQYSHRSAVS 240 Query: 241 F 241 F Sbjct: 241 F 241 >UniRef50_P05052 HTH-type transcriptional regulator appY n=6 Tax=Escherichia coli RepID=APPY_ECOLI Length = 249 Score = 167 bits (422), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 86/241 (35%), Positives = 145/241 (60%), Gaps = 2/241 (0%) Query: 1 MTHVCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCH 60 M +VCSV+ I +SFD+ ++ IS S+ ++ + + C R +DID+ T Sbjct: 1 MDYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLS 60 Query: 61 YLQNIR-QLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSM 119 + ++ +LP L K+ + + PP+ LV ++F+ + +S L L +S L+M Sbjct: 61 FFIDVNNELPGKFTL-DKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAM 119 Query: 120 FSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTC 179 F ++ + + +I+T + K+ +ISF+I ++W+L+DIAE +YTSESLIKK+L+DE T Sbjct: 120 FKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTS 179 Query: 180 FSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPG 239 F++IL +RM A++L+ ++ +A+KCGY+STSYFI F+ YYGVTP + + G Sbjct: 180 FTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIG 239 Query: 240 T 240 Sbjct: 240 V 240 >UniRef50_B7M6J8 Putative AraC-type regulatory protein encoded in prophage CP-933H ( transcription regulator) n=16 Tax=Escherichia RepID=B7M6J8_ECO8A Length = 250 Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 82/245 (33%), Positives = 125/245 (51%), Gaps = 17/245 (6%) Query: 1 MTHVCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCH 60 M CSVILI SFD+Y ++ + L S +L++ + D F D + Sbjct: 4 MATTCSVILILESFDVYFGKESVFLERGSSVLVDSSSRDFFLTYPERVIVADFGAEFISR 63 Query: 61 YLQ--------NIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNML 112 YL+ + R+ P L ++ D L+ + N I + Sbjct: 64 YLKANNLRDISDCREYPSYLKINFAD---------FSLIKGLISWANHCAEYIEIFDESI 114 Query: 113 YLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKK 172 +CLS FS +K+ LF + + KV+ +I D++ W L+DI+ R+Y SESL+K+K Sbjct: 115 AFTCLSAFSSEKQFGVFLFECLKSTEAKVKTIIHTDLSAPWRLKDISSRLYLSESLLKRK 174 Query: 173 LQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQ 232 L++E FSKI+L RM MA LL R P+ +A+ CGY+S SYF FR+Y+GV+P Q Sbjct: 175 LKEEGVSFSKIILDERMQMAEYLLSTRCYPISKVAKVCGYASVSYFTYVFRRYFGVSPSQ 234 Query: 233 FAQHS 237 ++Q S Sbjct: 235 YSQRS 239 >UniRef50_C6UHW7 Putative AraC-type regulatory protein encoded in prophage n=2 Tax=Escherichia coli RepID=C6UHW7_ECOBR Length = 237 Score = 141 bits (355), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 78/233 (33%), Positives = 132/233 (56%), Gaps = 1/233 (0%) Query: 1 MTHVCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCH 60 M ++CS+IL+ SF + ++ I + +L+E NL D F+ + +D++E TV Sbjct: 1 MPYICSIILVLNSFGVRIGKEDILFKKGNAVLIEYNLKDLFSSNTDHLMIVDVEEKTVND 60 Query: 61 YLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMF 120 + +N P ++ L++ + L+ + N ++ N + L+CL++ Sbjct: 61 FFKNYTLSPFSVRRFYPSYLIV-ECEDFSLLKNLVACLNCDSKTVDVVRNQISLACLAVL 119 Query: 121 SHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCF 180 S +K + LF S++++ KV+ +I DI+ W L DI+ R+Y SESL+K+KL+DE F Sbjct: 120 SSEKIVQSFLFGSLNSLGCKVKAIIHSDISASWRLCDISSRLYMSESLLKRKLKDEGLSF 179 Query: 181 SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 SK++L RM MA+RLL + +A CGY + SYF++ FR Y+GV PHQ+ Sbjct: 180 SKLILEERMMMAQRLLIYSNHTVGKVAGICGYDNASYFVSVFRGYFGVPPHQY 232 >UniRef50_Q83RF4 HTH-type transcriptional regulator ydeO n=59 Tax=Enterobacteriaceae RepID=YDEO_SHIFL Length = 253 Score = 134 bits (336), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 81/237 (34%), Positives = 132/237 (55%), Gaps = 7/237 (2%) Query: 1 MTHVCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCH 60 M+ VCSVI I +F+ + + + IL+++ + F + + +E T+ Sbjct: 1 MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFNENTIKK 60 Query: 61 YLQ--NIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLS 118 YLQ NI+ + + + L + P L+ + N N S +L SCLS Sbjct: 61 YLQCTNIQTVT----VPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLS 116 Query: 119 MFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENT 178 +F+ K I LL N + +VSGKV +++ +A W L+DI + +Y SESL+KKKL+ E T Sbjct: 117 IFAACKGFITLLTNGVLSVSGKVRNIVNMKLAHPWKLKDICDCLYISESLLKKKLKQEQT 176 Query: 179 CFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 FS+ILL +RM A+ L+ + ++ IAE+CGY+STSYFI FR+++G +P + ++ Sbjct: 177 TFSQILLDARMQHAKNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 >UniRef50_A7ZH67 HTH-type transcriptional regulator YdeO n=2 Tax=Escherichia coli RepID=A7ZH67_ECO24 Length = 240 Score = 133 bits (334), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 85/236 (36%), Positives = 131/236 (55%), Gaps = 2/236 (0%) Query: 1 MTHVCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCH 60 M VC ILI++ + + + L+ +LLL+ + D S ++++E TV + Sbjct: 7 MPGVCYFILIKKPINFQFLKDFLILNYGDVLLLKHSERDFLQSYSDKYLEIELNEDTVRN 66 Query: 61 YLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMF 120 YL + L + +L L+ ++ D+ N P + ++ S LS+F Sbjct: 67 YLSYYNHCEKQF-LETPPCILRKSFAYPDLLISMIDNINSQNHIHPDFKDAIFFSLLSVF 125 Query: 121 SHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCF 180 S L L + + T SGKV + D++K W LRD+A+ +Y SESLIKKKL ENT F Sbjct: 126 SDVANLRAFLTSGMPTFSGKVRSIFLSDVSKHWKLRDLADYLYMSESLIKKKLLLENTSF 185 Query: 181 SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 SKILL +RMS+A +LL+ + P+ ++E CG+SSTSYF+ FRQYY TP ++ +H Sbjct: 186 SKILLDTRMSLAIKLLK-QNHPIKYVSEMCGFSSTSYFVCLFRQYYECTPRKYLKH 240 >UniRef50_Q93SE2 Putative uncharacterized protein n=1 Tax=Escherichia coli RepID=Q93SE2_ECOLX Length = 245 Score = 126 bits (316), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 83/250 (33%), Positives = 133/250 (53%), Gaps = 30/250 (12%) Query: 4 VCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSP-DTRRLDIDELTVCHYL 62 VC VIL+ R F+ +K+ +LL + N++ F P + L IDE V Y+ Sbjct: 3 VCYVILVNRPFETEIAGKKLFFQKNDVLLTD-NISQSFFLRHPGNVTELRIDECIVRKYM 61 Query: 63 QNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNM----------- 111 + S DR I S V I +F+ + ++ N+ Sbjct: 62 E------------SADR--IQHSDSAVSVPFIKTTFSHIALLHNVMQNLSLQKTLPQQFS 107 Query: 112 --LYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLI 169 ++ +CLS+FS + + LLF I++V+ KV +I ++ W ++DI+ +Y SESL+ Sbjct: 108 EQMFFACLSIFSTHRGFMFLLFRCINSVALKVRYIICSSPSRAWRVKDISNSLYMSESLL 167 Query: 170 KKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVT 229 K+KLQ+E FS+ILL RM AR+L+ ++ ++ IA +CGY+ST YFI+ FR+Y+G+T Sbjct: 168 KRKLQEEKVSFSQILLDIRMHNARQLIS-SKLSVNQIAIRCGYASTPYFISVFREYFGIT 226 Query: 230 PHQFAQHSPG 239 PHQ + G Sbjct: 227 PHQMMINQSG 236 >UniRef50_C6UPG2 Putative envelope protein encoded within prophage CP-933N n=34 Tax=Escherichia coli RepID=C6UPG2_ECO5T Length = 237 Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 83/236 (35%), Positives = 126/236 (53%), Gaps = 8/236 (3%) Query: 1 MTHVCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCH 60 M VCSVI++ +I+ E+ +SL S++L K + F + DI+ V Sbjct: 1 MVVVCSVIMVCSPINIFLEKDTLSLKPGSVVLATKCIRALFLMHYGKVKIFDINHSIVSQ 60 Query: 61 YLQNIRQLPRNLGLHSKDR-LLINQSPPMP-LVTAIFDSFNESGVNSPILSNMLYLSCLS 118 YL+ +L R H D L ++ P P L A+ S SG + + L ++CLS Sbjct: 61 YLEIQHKLTRT---HLTDVPLYLSLEPNNPALAEALITSQRFSGDTTDMF---LMMACLS 114 Query: 119 MFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENT 178 +F + ++ L +S++S KV +I DI+ W L IA R++ SESL+K KL++E Sbjct: 115 LFESDERILLFLSGCLSSISAKVRAIIQTDISASWTLGAIALRLHMSESLLKIKLKNEGH 174 Query: 179 CFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFA 234 FS++LL RM +A +L R +AEKCGYSS SYFI+ F +YYG P ++ Sbjct: 175 MFSRLLLEERMRVAVNMLCSRHGYGQAVAEKCGYSSWSYFISVFHRYYGFPPDRYV 230 >UniRef50_Q9EYV5 HTH-type transcriptional regulator gadX n=60 Tax=Bacteria RepID=GADX_ECO27 Length = 274 Score = 92.4 bits (228), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 49/127 (38%), Positives = 75/127 (59%), Gaps = 1/127 (0%) Query: 112 LYLSCLSMFSHKKELIPLLFNSIS-TVSGKVERLISFDIAKRWYLRDIAERMYTSESLIK 170 L + LS+F + IPLL N + + +V +I+ +IA W L IA + S SL+K Sbjct: 117 LIFALLSVFLEDTQFIPLLLNVLQPNMRTRVCTVINNNIAHEWTLARIASELLMSPSLLK 176 Query: 171 KKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTP 230 KKL++E T +S++L RM A +L+ + + + +A CGY S SYFI FR YYG+TP Sbjct: 177 KKLREEGTSYSQLLTECRMQRALQLIVIYGVSIKRVAVSCGYHSVSYFIYVFRNYYGMTP 236 Query: 231 HQFAQHS 237 ++ + S Sbjct: 237 TEYQERS 243 >UniRef50_P41782 Transcriptional regulator hilD n=38 Tax=Salmonella enterica RepID=HILD_SALTY Length = 309 Score = 87.0 bits (214), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 40/98 (40%), Positives = 64/98 (65%) Query: 136 TVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRL 195 T+ +V +IS +++W L D+A+ ++ S S +K+KL +E T FS I L++RM+ A +L Sbjct: 206 TLKERVYNIISSSPSRQWKLTDVADHIFMSTSTLKRKLAEEGTSFSDIYLSARMNQAAKL 265 Query: 196 LELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 L + ++ +A KCGY STSYFI F++Y+ TP F Sbjct: 266 LRIGNHNVNAVALKCGYDSTSYFIQCFKKYFKTTPSTF 303 >UniRef50_Q8GA53 Putative CS12 fimbrial-like upstream regulatory protein n=3 Tax=Escherichia coli RepID=Q8GA53_ECOLX Length = 290 Score = 86.7 bits (213), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 44/108 (40%), Positives = 70/108 (64%), Gaps = 1/108 (0%) Query: 126 LIPLL-FNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKIL 184 ++PL+ F++ +T +V LI +IAK+W LR ++E SE I+KKL+ E F +++ Sbjct: 176 ILPLIYFSAATTFCNRVIELIESNIAKKWTLRLLSEEFSISEIAIRKKLEAEGVIFRELI 235 Query: 185 LASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQ 232 L RM A LL ++ + IA+K GY++ SYFI+ FRQ++G+TP Q Sbjct: 236 LEIRMKKAMTLLIAGELSVSKIADKVGYNNISYFISHFRQFFGMTPKQ 283 >UniRef50_P33234 HTH-type transcriptional regulator adiY n=102 Tax=Enterobacteriaceae RepID=ADIY_ECOLI Length = 253 Score = 86.7 bits (213), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 50/133 (37%), Positives = 77/133 (57%), Gaps = 2/133 (1%) Query: 112 LYLSCLSMFSHKKELIPLLFNSI-STVSGKVERLISFDIAKRWYLRDIAERMYTSESLIK 170 L + LS F K+ + L+ + + VS V ++I DI K W L +A + S SL+K Sbjct: 121 LLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLK 180 Query: 171 KKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTP 230 KKL+ ENT +S+I+ RM A L + + +++ CGY+STSYFI+ F+ +YG+TP Sbjct: 181 KKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP 240 Query: 231 -HQFAQHSPGTFS 242 H +QH T + Sbjct: 241 LHYVSQHRERTVA 253 >UniRef50_B7LQH5 HTH-type transcriptional regulator gadX for glutamic acid decarboylase and transporter (GadA, gad BC) (AraC/XylS family) (Modular protein) n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LQH5_ESCF3 Length = 289 Score = 85.9 bits (211), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/123 (38%), Positives = 71/123 (57%), Gaps = 1/123 (0%) Query: 112 LYLSCLSMFSHKKELIPLLFNSI-STVSGKVERLISFDIAKRWYLRDIAERMYTSESLIK 170 L L+ +S+F + IPLL + ++ +V +I+ +IA W L IA + S SL+K Sbjct: 133 LMLALMSLFLDDQNFIPLLMRILHPDITTRVCAVINSNIANDWSLTLIASELLMSPSLLK 192 Query: 171 KKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTP 230 KKLQ E T +S++L RM A +LL + A CGY S SYFI FR+++G+TP Sbjct: 193 KKLQAEQTTYSQLLTECRMQQALKLLRCDDYAVKKTAILCGYKSVSYFIAVFRKHFGITP 252 Query: 231 HQF 233 ++ Sbjct: 253 TEY 255 >UniRef50_A6AXU3 Transcriptional regulator, AraC family protein n=3 Tax=Vibrio parahaemolyticus RepID=A6AXU3_VIBPA Length = 238 Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 40/105 (38%), Positives = 65/105 (61%) Query: 133 SISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMA 192 S S++S ++ LIS D+ K W L++IA+ +Y SES +K+KL E T F+ +L A+R+ A Sbjct: 129 SYSSLSSRIRALISKDLTKPWTLKEIAKLVYMSESTVKRKLNKEGTTFTDVLQAARLDTA 188 Query: 193 RRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 ++++ + IAE CG+ SYF FR+ YG TP + + + Sbjct: 189 QKMVCNSDASVSAIAELCGFKHASYFGACFRKEYGATPLAYRKQA 233 >UniRef50_P43459 Transcriptional activator perA n=24 Tax=Escherichia coli RepID=PERA_ECO27 Length = 274 Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 83/147 (56%), Gaps = 4/147 (2%) Query: 88 MPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSIS-TVSGKVERLIS 146 + +V+ I SG N I +LYL LS F+ +++ ++ ++ S ++ +V ++I Sbjct: 119 LNIVSNIITDIKYSGNNKKIFK-ILYL--LSFFNDYNDIVNVILSASSKSIVDRVIKVIE 175 Query: 147 FDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTI 206 DI+K W L D++ M+ S+S ++K+L EN F KI+L +M A L + I Sbjct: 176 LDISKNWKLGDVSSSMFMSDSCLRKQLNKENLTFKKIMLDIKMKHASLFLRTTDKNIDEI 235 Query: 207 AEKCGYSSTSYFINTFRQYYGVTPHQF 233 + G++STSYFI F++YY TP ++ Sbjct: 236 SCLVGFNSTSYFIKVFKEYYNTTPKKY 262 >UniRef50_P10805 Porin thermoregulatory protein envY n=41 Tax=Enterobacteriaceae RepID=ENVY_ECOLI Length = 253 Score = 83.6 bits (205), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 51/124 (41%), Positives = 75/124 (60%), Gaps = 1/124 (0%) Query: 108 LSNMLYLSCLSMFSHKKELIPLLFNSI-STVSGKVERLISFDIAKRWYLRDIAERMYTSE 166 L+ L + LS F + I LL + S+V V R+I DI W LR +A + S Sbjct: 117 LTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSP 176 Query: 167 SLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYY 226 SL+KKKL++ENT +S+I+ RM A ++L + + +A+ CGYSSTSYFI+ F+ +Y Sbjct: 177 SLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFY 236 Query: 227 GVTP 230 G+TP Sbjct: 237 GLTP 240 >UniRef50_P23774 987P fimbrial operon positive regulatory protein fapR n=1 Tax=Escherichia coli RepID=FAPR_ECOLX Length = 260 Score = 83.2 bits (204), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 42/105 (40%), Positives = 68/105 (64%), Gaps = 1/105 (0%) Query: 130 LFNSIS-TVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASR 188 LF+S++ T S ++ L+ D+ ++W L DIAE M+ SE ++K+L+ E F++++L R Sbjct: 144 LFSSVAVTFSERIVTLLFSDLTRKWKLSDIAEEMHISEISVRKRLEQECLNFNQLILDVR 203 Query: 189 MSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 M+ A + + + IA GY+S SYFI TF++YYGVTP +F Sbjct: 204 MNQAAKFIIRSDHQIGMIASLVGYTSVSYFIKTFKEYYGVTPKKF 248 >UniRef50_B5R1L9 Fimbrial operon positive regulatory protein n=11 Tax=Salmonella enterica subsp. enterica RepID=B5R1L9_SALEP Length = 271 Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 48/122 (39%), Positives = 75/122 (61%), Gaps = 2/122 (1%) Query: 114 LSCL-SMFSHKKELIPLLFNSIS-TVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKK 171 ++CL S ++ ++L L S+S + S V + I DI+ +W L+ ++E++ SE I+K Sbjct: 131 IACLFSKVNNIEQLYTSLCISVSRSFSDIVRKTIDNDISTKWRLKTLSEKLNLSEVTIRK 190 Query: 172 KLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPH 231 KL++ENT F +ILL +RM A RL+ ++ ++ G SS SYFI F YYG+TP Sbjct: 191 KLENENTNFYRILLDARMQKAARLVLDSDTHINKVSYAVGMSSVSYFIKLFSDYYGLTPK 250 Query: 232 QF 233 QF Sbjct: 251 QF 252 >UniRef50_A7ZGX7 Transcriptional regulator, AraC family n=1 Tax=Escherichia coli E24377A RepID=A7ZGX7_ECO24 Length = 209 Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 50/137 (36%), Positives = 80/137 (58%), Gaps = 3/137 (2%) Query: 104 NSPILSNMLYLSCLSMFSHKKELIPLLF-NSISTVSGKVERLISFDIAKRWYLRDIAERM 162 +S +S ++YL +S ++I L+ +SI+ + KV +I D++++W L IA+ Sbjct: 74 DSSFISALIYL--ISKIKCNDKIIESLYMSSITFFTDKVRGVIEKDLSRKWTLAIIADVF 131 Query: 163 YTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTF 222 SE I+K+L+ E+T F++IL+ SRMS A LL + I+ G SS SYFI F Sbjct: 132 NVSEITIRKRLESEDTNFNQILMQSRMSKAALLLLENSYQISQISNMIGISSASYFIRIF 191 Query: 223 RQYYGVTPHQFAQHSPG 239 +++GVTP QF + G Sbjct: 192 NKHFGVTPKQFFNYFKG 208 >UniRef50_D2TIS0 Transcriptional regulator of virulence RegA n=5 Tax=Enterobacteriaceae RepID=D2TIS0_CITRO Length = 276 Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 37/100 (37%), Positives = 67/100 (67%) Query: 135 STVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARR 194 +T + K++ +I D+++ W L D+A ++ SE I+KKL+ E+ F+ ++L RM A + Sbjct: 170 TTFTEKLKVIIEADLSRSWRLVDLANILHMSEVSIRKKLEKESNNFNALVLDIRMYHAAK 229 Query: 195 LLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFA 234 L+ +++IA + GY+STSYFI F++++G+TP QF+ Sbjct: 230 LITTSDKHINSIANEVGYTSTSYFIRNFKEFFGITPKQFS 269 >UniRef50_B5FRI8 AraC family regulatory protein n=32 Tax=Enterobacteriaceae RepID=B5FRI8_SALDC Length = 291 Score = 80.9 bits (198), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 73/118 (61%), Gaps = 1/118 (0%) Query: 117 LSMFSHKKELIPLLFN-SISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD 175 LS F ++ E L S +T++ + +I DI+++W L+DI++ +Y S S +K+KL+ Sbjct: 161 LSEFIYEPEAFALFRELSQNTLAENIYNIIISDISRKWALKDISDSLYMSCSTLKRKLKQ 220 Query: 176 ENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 E+T FS++ L +RM+ A +LL + + +A CGY S SYF F++++ TP +F Sbjct: 221 EHTSFSEVYLNARMNKATKLLRNSEYNITRVAYMCGYDSASYFTCVFKKHFKTTPSEF 278 >UniRef50_P0A2T2 Virulence regulon transcriptional activator virF n=9 Tax=Enterobacteriaceae RepID=VIRF_SHIDY Length = 262 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 41/109 (37%), Positives = 64/109 (58%), Gaps = 5/109 (4%) Query: 130 LFNSIS-----TVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKIL 184 L+ SIS + S ++ +++ +I KRW L DI+ + SE ++K+L+ E F +IL Sbjct: 147 LYTSISIASSLSFSDQIRKIVEKNIEKRWRLSDISNNLNLSEIAVRKRLESEKLTFQQIL 206 Query: 185 LASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 L RM A +LL Q ++ ++ G SS SYFI F +YYG+TP +F Sbjct: 207 LDIRMHHAAKLLLNSQSYINDVSRLIGISSPSYFIRKFNEYYGITPKKF 255 >UniRef50_A7XY51 LngS n=3 Tax=Enterobacteriaceae RepID=A7XY51_ECOLX Length = 298 Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 40/120 (33%), Positives = 67/120 (55%), Gaps = 1/120 (0%) Query: 117 LSMFSHKKELIPLLFNSIS-TVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD 175 LS F H ++ S +V KV L+ + K+W L D++ ++ S S +K+KL Sbjct: 175 LSGFIHDTAFAGIISRSAKLSVKYKVYNLLYTEPDKQWKLDDVSSAIFMSASTLKRKLAT 234 Query: 176 ENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 E T FS++ + +RM++A +LL + + +A CGY S SYFI F++ + +TP F + Sbjct: 235 EGTTFSELYITARMNLASKLLRTGKYSVTNVAVLCGYDSVSYFIACFKRQFNITPSAFMK 294 >UniRef50_Q8GA34 AraC-like transcriptional regulator n=2 Tax=Escherichia coli RepID=Q8GA34_ECOLX Length = 271 Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 38/107 (35%), Positives = 63/107 (58%) Query: 126 LIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILL 185 +I L+ ++ T + K+ I + +KRW L IA+ SE ++K+L+ E T FS + L Sbjct: 158 IISLMASTAVTFTEKIRNQIENNPSKRWCLNMIADEFNISEISVRKRLESEGTSFSNLFL 217 Query: 186 ASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQ 232 RM + +LL ++ + I++ G+ STSYFI F+ Y+G+TP Q Sbjct: 218 KVRMEKSMQLLLQNELQICQISKSVGFRSTSYFIKIFKDYFGITPKQ 264 >UniRef50_P32326 Urease operon transcriptional activator n=12 Tax=Gammaproteobacteria RepID=URER_ECOLX Length = 296 Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 36/128 (28%), Positives = 70/128 (54%), Gaps = 1/128 (0%) Query: 107 ILSNMLYLSCLSMFSHKKELIPLL-FNSISTVSGKVERLISFDIAKRWYLRDIAERMYTS 165 ++ LY ++++ +++ L FN + + LI+ + K+W+L D+A+ ++T+ Sbjct: 138 LMKQSLYFILMAIYQEGIDILNLFRFNYDEPKNQAITHLITQEPQKKWHLDDVAKALFTT 197 Query: 166 ESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQY 225 S +++ L E F ++LL RM MA L + I+ +CG+ S +YF + F++ Sbjct: 198 PSTLRRHLNREGVSFRQLLLDVRMGMALNYLTFSNYSVFQISHRCGFGSNAYFCDVFKRK 257 Query: 226 YGVTPHQF 233 Y +TP QF Sbjct: 258 YNMTPSQF 265 >UniRef50_Q2BYZ8 Transcriptional regulator, AraC family protein n=6 Tax=Vibrionaceae RepID=Q2BYZ8_9GAMM Length = 293 Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 31/93 (33%), Positives = 57/93 (61%) Query: 141 VERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQ 200 + RLI+ D ++W + D+A+ ++T++S +++ L E FS++LL RM +A L Sbjct: 172 IARLITQDPQRKWSVDDMAKALFTTQSTLRRHLAKEGVSFSQLLLDVRMGLALNYLTFSN 231 Query: 201 IPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 + I+ + G+ S +YF + F++ YG+TP QF Sbjct: 232 YSISQISNRSGFGSAAYFCDAFKRKYGITPSQF 264 >UniRef50_A2PNS5 Transcriptional regulator, AraC family protein n=1 Tax=Vibrio cholerae MZO-3 RepID=A2PNS5_VIBCH Length = 267 Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 39/99 (39%), Positives = 67/99 (67%), Gaps = 3/99 (3%) Query: 134 ISTVSGKV-ERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMA 192 I +S KV E++I +RW L +A+ +Y SES +K+KL+ E+ F+++ +RMS A Sbjct: 162 IGVISRKVLEKIIECP-YERWSLSMMAKELYMSESTLKRKLKSEDQTFTELYNFARMSHA 220 Query: 193 RRLL-ELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTP 230 ++LL R I + T+AE CG++ SYF++ F++Y+G++P Sbjct: 221 KKLLLSNRDIKIATVAEMCGFNHVSYFVSCFKKYFGLSP 259 >UniRef50_Q04819 ORF11 n=5 Tax=Salmonella enterica subsp. enterica RepID=Q04819_SALTY Length = 259 Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 39/124 (31%), Positives = 73/124 (58%), Gaps = 5/124 (4%) Query: 96 DSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSIS-TVSGKVERLISFDIAKRWY 154 +S+ E+G +P L+ L +S F + P L + +++ +V +I+ ++++ W Sbjct: 105 NSYGETGPENPFLTFAL----VSAFCEQDIFFPFLKTCLKQSMADQVATVINRNVSENWT 160 Query: 155 LRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSS 214 + +A +Y S SL+KKKL++ENT +++ILL RM A L+ +++ + +A +CGYSS Sbjct: 161 IHRVAGELYVSVSLLKKKLKEENTSYTRILLECRMKKASELIVMQEGAVKKVAYQCGYSS 220 Query: 215 TSYF 218 F Sbjct: 221 VPVF 224 >UniRef50_D0YX71 Transcriptional regulator AraC family protein n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0YX71_LISDA Length = 321 Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 31/93 (33%), Positives = 56/93 (60%) Query: 141 VERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQ 200 + RLI+ D ++W + D+A+ ++T++S +++ L E FS++LL RM +A L Sbjct: 202 IARLITQDPQRKWSVDDMAKALFTTQSTLRRHLAKEGVSFSQLLLDVRMGLALNYLTFSN 261 Query: 201 IPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 + I + G+ S +YF + F++ YG+TP QF Sbjct: 262 YSISQIGHRSGFGSAAYFCDAFKRKYGITPSQF 294 >UniRef50_P43460 HTH-type transcriptional activator csvR n=12 Tax=Escherichia RepID=CSVR_ECOLX Length = 301 Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 47/131 (35%), Positives = 76/131 (58%), Gaps = 3/131 (2%) Query: 104 NSPILSNMLYLSCLSMFSHKKELIPLLF-NSISTVSGKVERLISFDIAKRWYLRDIAERM 162 +S +S ++YL +S ++I L+ +SI+ + KV +I D++++W L IA+ Sbjct: 132 DSSFISALIYL--ISKIKCNDKIIESLYMSSITFFTDKVRGVIEKDLSRKWTLAIIADVF 189 Query: 163 YTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTF 222 SE I+K+L+ E+T F++IL+ SRMS A LL + I+ G SS SYFI F Sbjct: 190 NVSEITIRKRLESEDTNFNQILMQSRMSKAALLLLENSYQISQISNMIGISSASYFIRIF 249 Query: 223 RQYYGVTPHQF 233 +++GVT F Sbjct: 250 NKHFGVTRSSF 260 >UniRef50_Q8Z4A6 Transcriptional regulator sirC n=36 Tax=Salmonella enterica RepID=SIRC_SALTI Length = 295 Score = 73.9 bits (180), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 89/178 (50%), Gaps = 18/178 (10%) Query: 70 RNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSP-ILSN------------MLYLSC 116 R L L +K + + +P ++ FDS GV P + SN ++YL Sbjct: 116 RELSLKTKPKYFF-HADLLPGMSDTFDSILH-GVACPRVCSNVSIDDHDYSYFSLMYL-- 171 Query: 117 LSMFSHKKELIPLLFNSIS-TVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD 175 +S F K L +I T KV +I D+ ++W ++A +++ S S +K+KL Sbjct: 172 ISAFVRKPGGFDFLERAIKITTKEKVYNIIISDLTRKWSQAEVAGKLFMSVSSLKRKLAA 231 Query: 176 ENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 E FSKI L +RM+ A +LL + + +A CGY + SYFI F++++ +TP F Sbjct: 232 EEVSFSKIYLDARMNQAIKLLRMGAGNISQVATMCGYDTPSYFIAIFKRHFKITPLSF 289 >UniRef50_A4TK67 Transcriptional regulator, AraC family n=35 Tax=Enterobacteriaceae RepID=A4TK67_YERPP Length = 291 Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 2/143 (1%) Query: 94 IFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRW 153 IF+S +E+ ++ L L + + + + N + +S KV R ++ D K W Sbjct: 127 IFNSISENSDIPTVIIKHRMLELLLWLAQRD--VKFILNDGNGLSEKVRRCLASDPHKIW 184 Query: 154 YLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYS 213 ++AE M SE ++++KL EN +++ RM+ A RLL+ P+ IA + GY Sbjct: 185 SASEVAEHMTMSEVVLRRKLAAENILLRDLMIDVRMTSALRLLQGTDWPISLIANQIGYE 244 Query: 214 STSYFINTFRQYYGVTPHQFAQH 236 S+S F FR+ +G P H Sbjct: 245 SSSRFAERFRKRFGFAPTAIRGH 267 >UniRef50_A6B243 Transcriptional activator of virulence loci n=4 Tax=Vibrio parahaemolyticus RepID=A6B243_VIBPA Length = 247 Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 60/99 (60%) Query: 136 TVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRL 195 ++S ++ RLIS I RW +I++ + S++ + +++ E T S ++L++RM+ A L Sbjct: 133 SISERIHRLISKQIQHRWTAEEISKNLNMSKATLMRRISQEKTTLSDLILSARMNKAAYL 192 Query: 196 LELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFA 234 L ++ P+ +A G+SS SYF F++ YG +P QF Sbjct: 193 LLKKKHPIKKVAHLTGFSSASYFCKKFKETYGNSPKQFV 231 >UniRef50_Q21KL2 Transcriptional regulator, AraC family n=5 Tax=Proteobacteria RepID=Q21KL2_SACD2 Length = 270 Score = 70.9 bits (172), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 35/95 (36%), Positives = 56/95 (58%) Query: 136 TVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRL 195 ++S KV +IS D+ W + I +++ SES I++KL E T + ++R+S Sbjct: 166 SLSAKVHAIISTDLTYDWTMDVITQKLAMSESTIRRKLTAEGTSLQAVKDSARLSFGLHQ 225 Query: 196 LELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTP 230 ++ P++ IAE+CGY S S F N F+Q +GVTP Sbjct: 226 VQSTFQPINHIAEQCGYLSQSRFTNKFKQLFGVTP 260 >UniRef50_A6T768 Bacterial regulatory protein, AraC family n=48 Tax=Enterobacteriaceae RepID=A6T768_KLEP7 Length = 262 Score = 70.1 bits (170), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 57/103 (55%) Query: 128 PLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLAS 187 PLL +S +V +LI A+ W + +A+ ++ ES ++++LQ E+ F +I+ Sbjct: 156 PLLVERQQDLSAQVRQLIMLSPAQAWSVSRVAKMLFLGESTLRRRLQQESQSFRQIVEEV 215 Query: 188 RMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTP 230 RM+ A L+ P+ IA+ GY S S F FRQ+YG+ P Sbjct: 216 RMAHALGQLQTTSRPIGEIAQNSGYQSGSRFTARFRQHYGLLP 258 >UniRef50_Q2SCQ2 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SCQ2_HAHCH Length = 276 Score = 69.7 bits (169), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 56/96 (58%) Query: 140 KVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELR 199 KV ++ + AK W L +I+ + SES ++++LQ EN F +L + R+ + L + Sbjct: 169 KVSEVLMQEPAKDWSLLEISRLLAVSESTLRRRLQSENAGFRDLLESVRLGIGLHLAQTT 228 Query: 200 QIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 +P+ IA++CGY S S F F+Q +G+TP + Q Sbjct: 229 LLPIAHIADQCGYQSQSRFTERFKQRFGMTPSELRQ 264 >UniRef50_Q7NTA1 Putative uncharacterized protein n=1 Tax=Chromobacterium violaceum RepID=Q7NTA1_CHRVO Length = 266 Score = 69.7 bits (169), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 66/242 (27%), Positives = 105/242 (43%), Gaps = 26/242 (10%) Query: 4 VCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDEL-TVCHYL 62 VC L R + H ++I L + + L A C LDI L YL Sbjct: 29 VCMPALCR----VRHGGKRIRLGDREMSAGPSQLVLLPAGCE-----LDIVNLPGPGGYL 79 Query: 63 QNIRQLPRNLGLHSKDR---LLINQSPPM--------PLVTA---IFDSFNESGVNSPIL 108 ++ LP +L +DR LL+ Q P PL +A + DS + G +P + Sbjct: 80 ADVVGLPPDLLDRFRDRHGPLLLRQRPGQELCPTMDGPLASAWTLLMDSLH--GNAAPEI 137 Query: 109 SNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESL 168 L + + PLL +++ + +L+ D A W + A R+ S Sbjct: 138 RQHHAEGVLLALALAGQAGPLLREKTDSLTQGLRQLMMLDPAAPWSVETAARRLNLGAST 197 Query: 169 IKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGV 228 ++++L +E+ F IL RM +A + ++ + + IAE GY+S S F FRQ YG+ Sbjct: 198 LRRRLAEEDAGFQAILEEVRMGLALQQVQDGRRSIAQIAEASGYASASRFAARFRQRYGL 257 Query: 229 TP 230 TP Sbjct: 258 TP 259 >UniRef50_A9MGM0 Putative uncharacterized protein n=1 Tax=Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- RepID=A9MGM0_SALAR Length = 296 Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 87/182 (47%), Gaps = 11/182 (6%) Query: 60 HYLQNIRQLPRNLGLHSKDRLLIN----QSPPMPLVTAIFDSFNESGVNSPI---LSNML 112 HY+ + PR S D ++IN Q+ L+ A+ +SF + + + Sbjct: 100 HYIYKDQNEPR--AWASNDYIIINFSHEQTKDYTLINALIESFPVTATGEILYDHVDEAK 157 Query: 113 YLSCLSMFSHKKELIPLLFNSIS--TVSGKVERLISFDIAKRWYLRDIAERMYTSESLIK 170 Y+ LS+ K + + S S T S KV LI D +K W +D+A +M S S K Sbjct: 158 YMLILSLIKQKNAALEDMILSYSSLTTSEKVASLIMSDYSKNWQSKDLAMQMNMSVSTFK 217 Query: 171 KKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTP 230 KK+ + S + +M A R L P+++IA GY+S+SYF + F++++ + P Sbjct: 218 KKMYKDTGSVSSYITKIKMIEALRQLRRTNRPINSIAISLGYTSSSYFTSVFKKHFKIFP 277 Query: 231 HQ 232 + Sbjct: 278 SE 279 >UniRef50_Q2S8T9 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2S8T9_HAHCH Length = 278 Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 37/99 (37%), Positives = 57/99 (57%) Query: 132 NSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSM 191 N + + KV LI + K+W +DIAE + SE+ +++KL E FS+IL+ RMS+ Sbjct: 166 NERADIQRKVRLLIGAEPDKKWSSQDIAESLALSEATLRRKLAKEGNAFSEILVDVRMSL 225 Query: 192 ARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTP 230 A LL+ + +IA + GY S S F F+Q +G +P Sbjct: 226 ALSLLQSTDAAIASIAYQVGYESASRFSVRFKQRFGFSP 264 >UniRef50_A6B6J4 Putative CFA/I fimbrial subunit D n=2 Tax=Vibrio parahaemolyticus RepID=A6B6J4_VIBPA Length = 241 Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 58/96 (60%) Query: 140 KVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELR 199 K+ RL+S D+ K+W L ++ + YTS+S + +KL+D T +I+ +R+ A L+ Sbjct: 134 KIYRLVSKDLKKKWSLEEVCKLTYTSKSTLNRKLKDNQTSMGQIISNARLDYATILITNT 193 Query: 200 QIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 + + I+ G++STSYF F++ +G +P Q+ + Sbjct: 194 SLSVDEISMLSGFNSTSYFCKKFKESHGFSPKQYRK 229 >UniRef50_C5BFY6 Transcriptional regulator, AraC family protein n=2 Tax=Edwardsiella RepID=C5BFY6_EDWI9 Length = 266 Score = 66.6 bits (161), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 2/152 (1%) Query: 86 PPMPLVTAIFDSFNES--GVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVER 143 P P +T ++D+ ++ +P L N L S L LL ++ ++++ Sbjct: 111 PMTPALTLLWDTMMDALRAPLAPPLLNHLAESLLLALQPSGHTALLLNERHDRLTEQIQQ 170 Query: 144 LISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPL 203 L+ D A W DIA+R++ +ES ++++L E F IL R+ A L+ P+ Sbjct: 171 LLLLDPAYAWQATDIAQRLHMAESTLRRRLNAEGKRFRDILDDVRLGQALLALQSGNTPI 230 Query: 204 HTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 IA + GY+S S F F + YG+TP Q Sbjct: 231 GDIASQSGYASPSRFTARFVRRYGLTPSALRQ 262 >UniRef50_B6BG36 Transcriptional Regulator, AraC family, putative n=1 Tax=Rhodobacterales bacterium Y4I RepID=B6BG36_9RHOB Length = 349 Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 46/82 (56%) Query: 158 IAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSY 217 IA + S ++++L+DE FS++L RM +A+R+L LH I+E+ GYS S Sbjct: 255 IAAALGMSRRTLRRRLEDEGQKFSRLLAGCRMEIAKRMLLAPGAQLHDISERLGYSEVSA 314 Query: 218 FINTFRQYYGVTPHQFAQHSPG 239 F FRQ G TP QF + G Sbjct: 315 FERAFRQREGATPSQFRKQCCG 336 >UniRef50_B8KKU1 Transcriptional regulator OruR n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KKU1_9GAMM Length = 348 Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 56/103 (54%) Query: 131 FNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMS 190 ++ +G+V RL++ + D A ++ SE ++++L +E T + +++L RM Sbjct: 234 MQAVQGFTGQVRRLLANAPGHHPSIEDAAGKLAMSERSLRRRLSEEGTTYKEVVLDFRME 293 Query: 191 MARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 +A L R++ + +A GY+ S F TF +YYG TP +F Sbjct: 294 LASSYLRGREMTIQEVAFLAGYADASNFHRTFSRYYGATPGEF 336 >UniRef50_C4GLE7 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GLE7_9NEIS Length = 264 Score = 64.3 bits (155), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 59/103 (57%), Gaps = 2/103 (1%) Query: 130 LFN--SISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLAS 187 +FN S +S ++ +LI+ D+A W + D+A+R+ SE+ ++++L +E F ++L Sbjct: 155 VFNPHSAQRLSKQIRQLIAQDMAASWQIADVAQRLGMSEATLRRRLANEGASFRELLGNI 214 Query: 188 RMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTP 230 +M A LL+ + + +A GY S + F FR ++G TP Sbjct: 215 KMMRALTLLQTSPLGVAQVAYAVGYESPARFAAKFRAHFGCTP 257 >UniRef50_C4G6T3 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G6T3_ABIDE Length = 534 Score = 63.2 bits (152), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 53/80 (66%), Gaps = 1/80 (1%) Query: 155 LRDIAERMYTSESLIKKKLQD-ENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYS 213 L +A++ + S++ I + L+ N F ++L++ RM +AR+++ + L+ IAEK GY+ Sbjct: 451 LDSVADKFHMSKTYISRILKKYTNQSFLQLLISRRMDIARKMIAEDKFKLYEIAEKVGYN 510 Query: 214 STSYFINTFRQYYGVTPHQF 233 SYFI F++ YGVTP+++ Sbjct: 511 DFSYFIQVFKKKYGVTPNEY 530 >UniRef50_Q0B4N6 Transcriptional regulator, AraC family n=16 Tax=Proteobacteria RepID=Q0B4N6_BURCM Length = 373 Score = 63.2 bits (152), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 46/79 (58%) Query: 155 LRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSS 214 L DIA M TS +K++LQ+E T F +L +R +MA LL + L +AE+ G+S Sbjct: 281 LDDIARLMNTSPRTLKRRLQEEGTTFRTLLAQARGAMAETLLGDAHLSLTEVAERLGFSD 340 Query: 215 TSYFINTFRQYYGVTPHQF 233 S F F+++YGV P + Sbjct: 341 LSSFSQAFKRWYGVPPGTY 359 >UniRef50_B9LZS6 Transcriptional regulator, AraC family n=1 Tax=Geobacter sp. FRC-32 RepID=B9LZS6_GEOSF Length = 324 Score = 63.2 bits (152), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 53/97 (54%) Query: 137 VSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLL 196 +S VE ++ D+ +W L+ +A+ + SE +++KLQDE F K+L +R+ A L Sbjct: 219 LSDSVEAIVKQDLNHKWTLKSVAQSLNMSERSMQRKLQDEGQTFRKLLNNARIRTAESYL 278 Query: 197 ELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 Q+ L I G+S S+F F++Y G P Q+ Sbjct: 279 LNSQLSLTEIGYLTGFSDYSHFSKEFKRYSGTNPSQY 315 >UniRef50_A5F384 TCP pilus virulence regulatory protein n=21 Tax=Vibrio cholerae RepID=TCPN_VIBC3 Length = 276 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 51/222 (22%), Positives = 106/222 (47%), Gaps = 21/222 (9%) Query: 25 LHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCH-YLQNIRQ------LPRNLGLHSK 77 +++ SI+LL+KN F+ S +++ +T+ ++++++ + RNL +K Sbjct: 53 INSSSIILLKKNSIQRFSLTSLSDENINVSVITISDSFIRSLKSYILGDLMIRNLYSENK 112 Query: 78 DRLLIN-QSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSIST 136 D LL N + + +++ + + F E + L ++ S KK +NSI Sbjct: 113 DLLLWNCEHNDIAVLSEVVNGFREINYSDEFLK--VFFSGFFSKVEKK------YNSIFI 164 Query: 137 VSG-----KVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSM 191 K+ L+ DI + W DI + T+ ++KK+L+ F +++ + R+S Sbjct: 165 TDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVKFRELINSIRISY 224 Query: 192 ARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 + L++ + + IA + G++S SYF F+ V P ++ Sbjct: 225 SISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEY 266 >UniRef50_C4T4E3 AraC-type DNA-binding domain-containing protein n=3 Tax=Yersinia RepID=C4T4E3_YERIN Length = 269 Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 58/105 (55%) Query: 129 LLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASR 188 LL + + +V++++ D A+ W + D+A ++ +S +++KL E+ F IL R Sbjct: 158 LLIDRRDKWAEQVQQVLLLDPARNWSVSDVARSLHIGDSTLRRKLMQEDRSFRMILEEVR 217 Query: 189 MSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 M A L+ + + IA + GY S S F + F+Q++G+TP + Sbjct: 218 MGCALHALQTTSLSIGEIAAQHGYISPSRFTSRFQQHFGLTPRRL 262 >UniRef50_Q65QI0 AraC protein n=1 Tax=Mannheimia succiniciproducens MBEL55E RepID=Q65QI0_MANSM Length = 284 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/221 (22%), Positives = 98/221 (44%), Gaps = 30/221 (13%) Query: 12 RSFDIYHE-QQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPR 70 ++FD+ + K+ + + LE+ + D+FA D V Y+Q + ++ Sbjct: 67 QTFDVLNNPDAKLGFYQAGWIALEQRVVDEFA-----------DLFGVETYVQELAKIQ- 114 Query: 71 NLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSH-KKELIPL 129 P+ + A FD ++ N +L L + + K E + Sbjct: 115 ----------------PLAPLKAHFDVVRQALENDEAPELVLKLKLFELLAWLKAEHLSF 158 Query: 130 LFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRM 189 + + + ++ ++I+ + A W IA +++ SE+ +++ LQ +T F ++L RM Sbjct: 159 VPHEKHNLLRQIRKMIASNTAFEWTAETIARQLHLSETSLRRALQKSDTTFREVLTDVRM 218 Query: 190 SMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTP 230 S A LL++ + + IA + GY S S F F+Q +G P Sbjct: 219 SRALTLLQITKWQVARIANEVGYDSPSRFTVRFKQRFGFLP 259 >UniRef50_C0EGI7 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EGI7_9CLOT Length = 239 Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 72/137 (52%), Gaps = 10/137 (7%) Query: 98 FNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRD 157 + ES + S ++S + L C+ +H+ + L+ + I+ ++ + + L + Sbjct: 95 YYESMIQSSLISLIAVLMCIHDSTHQHQGKQLMSSIITYINSNLTTVS---------LEE 145 Query: 158 IAERMYTSESLIKKKLQD-ENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTS 216 ++E+ + SES I +K+Q+ FSKIL S++ +R LE I + IA GY+ S Sbjct: 146 LSEKFHYSESYISRKIQEYTGKSFSKILQESKLEQIKRYLETSSISIENIAHLIGYNDAS 205 Query: 217 YFINTFRQYYGVTPHQF 233 Y F+++YGV+P + Sbjct: 206 YLHQVFKKHYGVSPAAY 222 >UniRef50_D2YK24 Type 4 prepilin-like protein leader peptide-processing enzyme n=1 Tax=Vibrio mimicus VM573 RepID=D2YK24_VIBMI Length = 533 Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 52/229 (22%), Positives = 107/229 (46%), Gaps = 21/229 (9%) Query: 25 LHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCH-YLQNIRQ------LPRNLGLHSK 77 +++ SI+LL+KN F+ S +++ +T+ ++++++ + RNL +K Sbjct: 53 INSSSIILLKKNSIQRFSLTSLSDENINVSVITISDSFIRSLKSYILGDLMIRNLYSENK 112 Query: 78 DRLLIN-QSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSIST 136 D LL N + + +++ + + F E + L ++ S KK +NSI Sbjct: 113 DLLLWNCEHNDIAVLSEVVNGFREINYSDEFLK--VFFSGFFSKVEKK------YNSIFI 164 Query: 137 VSG-----KVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSM 191 K+ L+ DI + W DI + T+ ++KK+L+ F +++ + R+S Sbjct: 165 TDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVKFRELINSIRISY 224 Query: 192 ARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGT 240 + L++ + + IA + G++S SYF F+ V P ++ G Sbjct: 225 SISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLLMLTGV 273 >UniRef50_B6RAA0 Transcriptional regulator, AraC family n=4 Tax=Alphaproteobacteria RepID=B6RAA0_9RHOB Length = 263 Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 49/93 (52%) Query: 140 KVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELR 199 KV LI D++ W D+A SE+ ++ L F+K+LL +R+ LL+ Sbjct: 165 KVRSLIETDLSYAWRATDVASHFAMSEATFRRWLAKSGHGFAKVLLHTRLEKGLTLLQST 224 Query: 200 QIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQ 232 P+ IA CG+++ S+F F++ +G+ P + Sbjct: 225 HEPISNIALDCGFNTPSHFSEAFKKRFGIRPKE 257 >UniRef50_B5ZYE2 Transcriptional regulator, AraC family n=12 Tax=Rhizobium RepID=B5ZYE2_RHILW Length = 284 Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 52/92 (56%) Query: 140 KVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELR 199 ++ ++I D A W L A SE+ ++++L ENT FS+IL +RM+ A L+ Sbjct: 167 RLRQMIESDPAFDWTLAHAARSFNMSEATLRRRLAAENTGFSEILSDTRMNRALGLIHTT 226 Query: 200 QIPLHTIAEKCGYSSTSYFINTFRQYYGVTPH 231 +P+ +A + GY S S F F++ +GV+P Sbjct: 227 TLPMAQVALEVGYDSPSQFSARFKERFGVSPR 258 >UniRef50_A6WTM9 Helix-turn-helix-domain containing protein AraC type n=7 Tax=Shewanella RepID=A6WTM9_SHEB8 Length = 252 Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 1/122 (0%) Query: 113 YLSCLSMFSHKKELIPLLFNSIS-TVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKK 171 YL+ L + K + L+ +V+ L+S A W +IA++++ S + +++ Sbjct: 127 YLAALLLSLPDKRSVSWLYGHTQRSVTQAALALMSVSPAAPWQQEEIADKLHMSTASLRR 186 Query: 172 KLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPH 231 KL E+T F ++L+ R+S +L+ PL +A CGY S F F+Q +G+TP Sbjct: 187 KLALEDTSFRQLLVEVRLSHGLAMLQNSGEPLLQVALACGYQSAEKFSLRFKQQFGLTPA 246 Query: 232 QF 233 + Sbjct: 247 AY 248 >UniRef50_B4SIX4 Transcriptional regulator, AraC family n=3 Tax=Xanthomonadaceae RepID=B4SIX4_STRM5 Length = 274 Score = 59.7 bits (143), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 28/102 (27%), Positives = 53/102 (51%) Query: 129 LLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASR 188 LL ++ ++ I+ + A+ W RD+ E+ S + ++++L E T ++L +R Sbjct: 170 LLLPQAPSLGEQIRDRIAAEPARDWQSRDVEEQFALSGATLRRRLAAERTSLRQLLTEAR 229 Query: 189 MSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTP 230 ++ LL +PL T+A + GY S + F F + YG+ P Sbjct: 230 LAHGMTLLYTTDLPLKTVAARAGYRSAASFSKRFAEQYGLAP 271 >UniRef50_Q39HU5 Transcriptional regulator, AraC family n=1 Tax=Burkholderia sp. 383 RepID=Q39HU5_BURS3 Length = 345 Score = 59.7 bits (143), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 50/86 (58%) Query: 155 LRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSS 214 L+DIA + TSE +K++LQ+E CF I A R + A+ L+ ++ + IA++ G+S Sbjct: 260 LKDIATLLNTSERTLKRRLQEEGACFRDISSAVRKTRAQALIAEGRLSIKEIAQELGFSD 319 Query: 215 TSYFINTFRQYYGVTPHQFAQHSPGT 240 S F ++++ GV P Q + G+ Sbjct: 320 MSSFSQAYKRWTGVAPSVSRQETAGS 345 >UniRef50_B1XIJ2 Two-component response regulator n=2 Tax=Synechococcus RepID=B1XIJ2_SYNP2 Length = 266 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 1/77 (1%) Query: 155 LRDIAERMYTSESLIKKKLQDENT-CFSKILLASRMSMARRLLELRQIPLHTIAEKCGYS 213 ++ IAE + S S + +Q E + ++A RM AR+LL+ P+H IAE CGY Sbjct: 182 IKAIAEEVGYSTSYLSNLVQKETGYTVKQWIIARRMLQARKLLKNTNKPIHKIAELCGYH 241 Query: 214 STSYFINTFRQYYGVTP 230 YF N FR+++G TP Sbjct: 242 DAGYFTNQFRRFHGKTP 258 >UniRef50_A9ACW6 AraC family transcriptional regulator n=3 Tax=Burkholderia multivorans RepID=A9ACW6_BURM1 Length = 339 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 50/86 (58%) Query: 155 LRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSS 214 L+DIA + TSE +K++LQ+E CF I A R + A+ L+ ++ + IA++ G+S Sbjct: 254 LKDIAALLNTSERTLKRRLQEEGACFRDISNAVRKARAQALVAEGRLSIKEIAQELGFSD 313 Query: 215 TSYFINTFRQYYGVTPHQFAQHSPGT 240 S F ++++ GV P Q + G+ Sbjct: 314 MSSFSQAYKRWTGVAPSMSRQRAGGS 339 >UniRef50_B4X4X5 Transcriptional regulator, AraC family protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4X4X5_9GAMM Length = 341 Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 57/99 (57%), Gaps = 2/99 (2%) Query: 136 TVSGKVERLISFDIAKRWYL--RDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMAR 193 +VS +V LI + + L ++A R++ S + ++L+ ENT ++ +R+ A+ Sbjct: 240 SVSDRVRNLIRKALVEGELLTSEEMALRLFMSSRTLNRRLEKENTHIRLLMDQARLEYAK 299 Query: 194 RLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQ 232 RLL+ +P+ T+A K GY + S F F++Y+ V+P Q Sbjct: 300 RLLQTTSLPISTVANKSGYKNPSSFSRAFKRYFDVSPGQ 338 >UniRef50_D0SJB7 Predicted protein n=1 Tax=Acinetobacter junii SH205 RepID=D0SJB7_ACIJU Length = 351 Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 47/80 (58%) Query: 158 IAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSY 217 IAER+ SE +K+ LQ + T F +I+ R + A+++L+ +Q + IA GY + Sbjct: 270 IAERLNMSERTLKRHLQAQGTTFLQIVADVRFTEAKKMLQHKQYSIQDIASIVGYEEATN 329 Query: 218 FINTFRQYYGVTPHQFAQHS 237 FI F++ +G TP Q+ + S Sbjct: 330 FIRAFKKTFGETPSQYRKRS 349 >UniRef50_B4X435 Transcriptional regulator, AraC family protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4X435_9GAMM Length = 377 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 9/122 (7%) Query: 116 CLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD 175 C + + K+ L+PL+ ++ +L+ A+ +A+ + S S +K+ L Sbjct: 264 CEELMTRKQALLPLV--------SRIRQLLGQGHAEP-NQESVAQALNMSRSTLKRHLAR 314 Query: 176 ENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 ENT F +L R A RLL L IAE+ GYS + F + FRQ+ G+TP +F + Sbjct: 315 ENTHFQAVLTNIRKENAVRLLLGTTHSLEHIAEQLGYSDQTNFSHAFRQWSGMTPGRFRK 374 Query: 236 HS 237 HS Sbjct: 375 HS 376 >UniRef50_A0Z3Z2 Transcriptional regulator, AraC family protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z3Z2_9GAMM Length = 343 Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 13/112 (11%) Query: 144 LISFDIAK--RWYLRD-----------IAERMYTSESLIKKKLQDENTCFSKILLASRMS 190 L + DIA RW L D IA+ ++ S ++++L+ ENT + +++ +RM Sbjct: 227 LRTGDIAGKVRWQLLDALDKELPSEEAIAQALHMSPRTLQRRLKAENTSYGEVVQQTRMQ 286 Query: 191 MARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGTFS 242 +A++LL I + CG+S S F F+++ G TP + P T S Sbjct: 287 LAQQLLASPDISATEVGLACGFSDASAFTRAFKRWTGTTPSDYRSGMPNTDS 338 >UniRef50_B9K5W8 Transcriptional regulatory protein n=1 Tax=Agrobacterium vitis S4 RepID=B9K5W8_AGRVS Length = 338 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 43/78 (55%) Query: 157 DIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTS 216 D+AE++ S + + ++ E T F + SR +A RLL Q P+ IA +CG+ + + Sbjct: 249 DLAEKLNLSTRSLHRHIKQEGTSFQALKDLSRQRLAERLLASTQWPIKRIARECGFDAEA 308 Query: 217 YFINTFRQYYGVTPHQFA 234 F+ F+ + G TP FA Sbjct: 309 SFVRAFKSWTGQTPRAFA 326 >UniRef50_A3JHC0 Transcriptional regulator, AraC family protein n=2 Tax=Gammaproteobacteria RepID=A3JHC0_9ALTE Length = 342 Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 43/77 (55%) Query: 155 LRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSS 214 L D+A R+ S + +KL+ E T + +L R +A L + + IAE+ GY Sbjct: 258 LDDVASRLAMSRRTLIRKLKTEGTSYQDLLDGVRQELAAWYLLETTVAVEQIAERLGYQD 317 Query: 215 TSYFINTFRQYYGVTPH 231 TS F TFR+++G+TPH Sbjct: 318 TSNFSRTFRRWFGMTPH 334 >UniRef50_A0KMW4 Transcriptional regulator, AraC/XylS family n=2 Tax=Aeromonas RepID=A0KMW4_AERHH Length = 270 Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 2/115 (1%) Query: 129 LLFNSIS-TVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLAS 187 LLF + + T+ ++ R + + L +A S + + +KL E F ++L Sbjct: 147 LLFPAHTMTLGERLARYLGVEPGADHTLEGVAPHFAMSRASMARKLAAEGRSFRQLLTQV 206 Query: 188 RMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGTFS 242 RMS A LL+ +PL T A CGY S S F F+Q +G+TP+Q+ + P + + Sbjct: 207 RMSHALTLLQQGLVPLET-ALACGYDSPSRFAARFKQEFGLTPYQYLRTCPSSLA 260 >UniRef50_Q8RSF6 Putative transcriptional regulator protein n=2 Tax=Bacteria RepID=Q8RSF6_WOLSU Length = 333 Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 23/82 (28%), Positives = 52/82 (63%) Query: 155 LRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSS 214 ++D+A+R+ + ++ +L+ E T F +++++++ +A L+ ++I + +AE+ GYS Sbjct: 249 VKDVAKRLEITPRTLQNRLKVEGTTFQELIISTKKQLACHYLKTKEINIQEVAERLGYSE 308 Query: 215 TSYFINTFRQYYGVTPHQFAQH 236 TS F F+Q+ TP +F ++ Sbjct: 309 TSAFNRAFKQWTNFTPREFRKN 330 >UniRef50_A9GN71 Tra n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GN71_SORC5 Length = 329 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 52/97 (53%), Gaps = 1/97 (1%) Query: 141 VERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQ 200 V L+ D A+ W ++A + S++ ++++L + F +L R+ +A+ LL + Sbjct: 216 VRALVRRDPARPWAAPEVARALGVSDATLRRRLGAKGVSFRALLWKERLDLAKGLLRSGR 275 Query: 201 IPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF-AQH 236 + +A CGY S S F FR+ GV+P ++ A+H Sbjct: 276 HGVLEVATACGYDSASRFAEQFRRSEGVSPSEYRARH 312 >UniRef50_D0KCL6 Transcriptional regulator, AraC family n=5 Tax=Pectobacterium RepID=D0KCL6_PECWW Length = 288 Score = 56.6 bits (135), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 50/94 (53%) Query: 137 VSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLL 196 VS ++ LIS + + W + + SE+ ++++L E T F +LL +RM A L+ Sbjct: 191 VSTQLRALISEEPERHWTAQSAGRLLAMSEATLRRRLSAEQTRFEVLLLETRMQHAMMLV 250 Query: 197 ELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTP 230 + + +AE CGY S++ F F+ +G +P Sbjct: 251 QTTSWSMQRLAEACGYKSSARFSERFKTRFGCSP 284 >UniRef50_A4BJM9 Putative uncharacterized protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BJM9_9GAMM Length = 349 Score = 56.6 bits (135), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 26/76 (34%), Positives = 46/76 (60%) Query: 158 IAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSY 217 IAE+++ S+ + ++L DE F +L +RM++A + L+ ++ L +A GYS S Sbjct: 268 IAEQLHLSKRTLHRRLHDEGVVFRDLLRETRMTLAEQYLKDGKMTLPEVALMLGYSEQSA 327 Query: 218 FINTFRQYYGVTPHQF 233 F FRQ++ V+P Q+ Sbjct: 328 FNRAFRQWFAVSPRQY 343 >UniRef50_D1RT58 Transcriptional regulatory protein n=1 Tax=Serratia odorifera 4Rx13 RepID=D1RT58_SEROD Length = 294 Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 42/78 (53%) Query: 153 WYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGY 212 W R E + SES ++++L++E F K+L+ RM L++ + + +A+ CGY Sbjct: 213 WTARSAGEALAMSESTLRRRLREEGGSFEKLLVDIRMHHGLMLIQTTRWNMAQVADACGY 272 Query: 213 SSTSYFINTFRQYYGVTP 230 S S F F Q +G+ P Sbjct: 273 KSVSRFAERFTQRFGLPP 290 >UniRef50_A3J4H6 Two-component system sensor histidine kinase/response regulator, hybrid ('one component system') n=1 Tax=Flavobacteria bacterium BAL38 RepID=A3J4H6_9FLAO Length = 254 Score = 56.2 bits (134), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 37/144 (25%), Positives = 71/144 (49%), Gaps = 10/144 (6%) Query: 103 VNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDI---- 158 +N P L L + +K+ +I + N +S + K + FD +R+I Sbjct: 106 INKPFKIQELVLKIQNFLQYKENIIKQVQNPVSKIQVKSRKNDFFDKIDDIVIRNIKTDV 165 Query: 159 -----AERMYTSESLIKKKLQD-ENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGY 212 A ++ S+S I KK++ + S + R++ A +L+E ++ + T+A +CG+ Sbjct: 166 TIEKLASEIFVSKSTIDKKIRKFKQVNVSTYIREIRLNYAIKLIESGEVNVDTLAIECGF 225 Query: 213 SSTSYFINTFRQYYGVTPHQFAQH 236 +STSYF F+ Y G++P ++ Sbjct: 226 NSTSYFSVCFKNYSGLSPKKYINQ 249 >UniRef50_A6GLT9 Transcriptional regulator, AraC family protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GLT9_9BURK Length = 329 Score = 56.2 bits (134), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 29/100 (29%), Positives = 53/100 (53%), Gaps = 1/100 (1%) Query: 134 ISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMAR 193 + V+G+V R++ + L D+A + S ++++L +E FS +L A R +A Sbjct: 226 VEGVTGQVRRILLGPMGLLSTLEDVARSLSISPRSLRRRLAEEGVSFSDLLDAERQQLAE 285 Query: 194 RLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 +LL Q+ L +A GY T+ F FR++Y +P ++ Sbjct: 286 QLLST-QMKLDEMALHLGYGDTASFTRAFRRWYNCSPGEY 324 >UniRef50_D1PKE0 Transcriptional regulator, AraC/XylS family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKE0_9FIRM Length = 324 Score = 56.2 bits (134), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 7/86 (8%) Query: 155 LRDIAERMYTS----ESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKC 210 L +AER + S +LI+ Q F ++L R+ A++LL ++P+ IAE Sbjct: 236 LSHVAERFHVSLPYLSALIR---QATGNTFKELLQQKRLDRAQQLLRTTRLPVQAIAESV 292 Query: 211 GYSSTSYFINTFRQYYGVTPHQFAQH 236 GY +TSYF +++ +G+TP ++ H Sbjct: 293 GYDTTSYFYGIYKKAFGITPKEYRDH 318 >UniRef50_A6Y0W0 AraC-type DNA-binding domain-containing protein n=10 Tax=Vibrionaceae RepID=A6Y0W0_VIBCH Length = 328 Score = 56.2 bits (134), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 58/102 (56%), Gaps = 1/102 (0%) Query: 140 KVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLEL 198 + +++ + K W + ++ ++ T+E+ K+ + NT FSK+L +RM +A +L Sbjct: 227 QAHAMMASEPEKNWSIGELCRQVGTNETSFKRGFKLLFNTTFSKLLQHTRMKIAAEVLRH 286 Query: 199 RQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGT 240 P+ IA + GY+S S+F F+Q++GV P Q+ ++ T Sbjct: 287 SDQPIIDIAYQVGYTSPSHFSKLFKQHFGVNPLQYRKNGQTT 328 >UniRef50_UPI0001C35C05 AraC family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35C05 Length = 511 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%) Query: 155 LRDIAERMYTSESLIKKKLQDENTC-FSKILLASRMSMARRLLELRQIPLHTIAEKCGYS 213 L DIAER+ + + + + E K + RM AR+LLE ++ + +A+ CGY Sbjct: 423 LEDIAERVNLAPAYLSYLFKKETGANLVKYITDYRMEQARKLLEEGELKIVLVAKACGYE 482 Query: 214 STSYFINTFRQYYGVTPHQFAQHS 237 + YF F+ YYG+TP Q+ + + Sbjct: 483 NQPYFNRLFKNYYGMTPRQYREKN 506 >UniRef50_A9ETR6 AraC-type DNA-binding domain-containing protein n=2 Tax=Rhodobacteraceae RepID=A9ETR6_9RHOB Length = 344 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 11/117 (9%) Query: 124 KELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKI 183 KEL PL+ + S V ++ +SF+ + DIA+ S S + +KL E T + ++ Sbjct: 235 KELTPLIGETSSLVQSEITSRLSFNAPTQ---DDIAKTFGMSISTLGRKLAKEGTTYKQL 291 Query: 184 LLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGT 240 L +R +A + L+ ++ L IA GYS + F N ++ + G HSPG+ Sbjct: 292 LKDTRQRLAEQYLDDPKLSLAEIAFGLGYSDQAAFTNAYKSWTG--------HSPGS 340 >UniRef50_A4XTI6 Transcriptional regulator, AraC family n=6 Tax=Pseudomonas aeruginosa group RepID=A4XTI6_PSEMY Length = 360 Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 53/97 (54%) Query: 137 VSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLL 196 V+G+V +L+ + + +A R++ S ++++L +E + F + R ++A LL Sbjct: 260 VAGRVRQLLLQTPGQMADMEQVASRLHLSSRTLRRRLIEEGSSFRALQDEVREALADELL 319 Query: 197 ELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 + L IAE+ GY S FI+ F+++ G TP ++ Sbjct: 320 AAGGLSLEEIAERLGYGELSNFIHAFKRWKGTTPGRY 356 >UniRef50_Q1ZU86 Putative CFA/I fimbrial subunit D n=1 Tax=Photobacterium angustum S14 RepID=Q1ZU86_PHOAS Length = 239 Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 52/92 (56%) Query: 144 LISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPL 203 L+S D+ ++W I E +Y S + + ++L +NT ++ R++ A LL ++P+ Sbjct: 145 LVSNDLKRKWSYDLICELLYLSPATLYRELSKKNTSLKELTNNLRLTEAATLLRGTKLPV 204 Query: 204 HTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 IA + G+ S+SYF F+Q + TP ++ + Sbjct: 205 GKIANEVGFGSSSYFGKVFKQTFNCTPVEYRK 236 >UniRef50_A6GMI7 Putative transcriptional regulator, AraC family protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GMI7_9BURK Length = 340 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 48/86 (55%) Query: 148 DIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIA 207 D++ L IA + +E ++++L DE T + +L R +MA LL + + ++ Sbjct: 244 DLSSSPSLAQIATDHFMTERTLRRRLTDEGTSYRDLLAEVRQTMAEELLSSTGLSVSEVS 303 Query: 208 EKCGYSSTSYFINTFRQYYGVTPHQF 233 + GYSS S FI+ F++++ +P QF Sbjct: 304 ARLGYSSPSAFIHAFQKWHNCSPRQF 329 >UniRef50_A5TXQ0 Possible AraC family transcriptional regulator n=3 Tax=Fusobacterium RepID=A5TXQ0_FUSNP Length = 515 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 53/97 (54%), Gaps = 6/97 (6%) Query: 146 SFDIAKRWYLRD-----IAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELR 199 S + +++Y +D +A S+S +K +++ N FS LL R+ A+ LL+ + Sbjct: 415 SINFLEKYYYKDLSLTEVANVCNMSDSYFSRKFKEKFNINFSTYLLNIRLEKAKELLKEK 474 Query: 200 QIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 + + I+E G+ +SYF +F+Q YG+ PH + + Sbjct: 475 NLNIENISEMVGFKDSSYFSKSFKQKYGIAPHYYRDN 511 >UniRef50_B6XD52 Putative uncharacterized protein n=2 Tax=Providencia RepID=B6XD52_9ENTR Length = 282 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/112 (33%), Positives = 62/112 (55%), Gaps = 2/112 (1%) Query: 117 LSMFSHKKELIPLLFNSISTVS-GKVERLISFDIAKR-WYLRDIAERMYTSESLIKKKLQ 174 LS F + P L S++ ++ KV I + K+ L IA++++ S S +K++L Sbjct: 160 LSFFLLENTFYPTLQTSMNVLTKDKVYDYIYHNSGKQNCTLELIAKQLHMSTSTLKRRLA 219 Query: 175 DENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYY 226 E+T FS I L SRM+ A L ++ +P+ IA++ GY +FI F+ +Y Sbjct: 220 SEDTNFSTISLTSRMNKAMMLSKVDNMPMPRIAQEVGYDDIPHFIQAFKNFY 271 >UniRef50_C0VNX7 AraC family transcriptional regulator n=1 Tax=Acinetobacter sp. ATCC 27244 RepID=C0VNX7_9GAMM Length = 401 Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 45/76 (59%) Query: 155 LRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSS 214 L+ +AER++ SE ++++L E T F ++ R A LL+ + + + IAE+ GY+ Sbjct: 311 LKQVAERLHLSERTLQRQLAKEQTSFQLLIAEVRRKQAEFLLKQQHLSIEQIAERLGYAD 370 Query: 215 TSYFINTFRQYYGVTP 230 S+F F+++ VTP Sbjct: 371 ISHFSRAFKKWTNVTP 386 >UniRef50_B7S017 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S017_9GAMM Length = 343 Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/104 (26%), Positives = 56/104 (53%), Gaps = 1/104 (0%) Query: 137 VSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLL 196 + G+V R+++ K + ++A + E ++++L DE+T + +++L RM +A L Sbjct: 239 IEGEVRRILANQPGKYPGIIEVARALAMGERTLRRRLADEDTTYKQVVLEFRMELAASYL 298 Query: 197 ELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ-HSPG 239 + + IA GY+ S F TF ++ G+TP+ + + H G Sbjct: 299 RGNAMSIQEIAYVTGYADPSNFHRTFNKHQGLTPNAYRRLHQAG 342 >UniRef50_Q2RVL5 Transcriptional regulator, AraC family n=2 Tax=Alphaproteobacteria RepID=Q2RVL5_RHORT Length = 351 Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/99 (27%), Positives = 53/99 (53%), Gaps = 3/99 (3%) Query: 134 ISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMAR 193 + V G+ RL++ ++ D+AE + + ++++L DE FS ++ R ++A+ Sbjct: 249 VEQVRGETRRLLTEGAP---HIEDVAEALGLARWTLQRRLADEGLSFSDVVDDLRRTLAK 305 Query: 194 RLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQ 232 R + +PL IA+ GYS S F F +++G++ Q Sbjct: 306 RYVSQPHVPLADIAQFLGYSEPSAFSRAFVRWFGISAQQ 344 >UniRef50_A9GK63 Transcriptional regulator, AraC family n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GK63_SORC5 Length = 197 Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 44/75 (58%) Query: 158 IAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSY 217 IA R+ S+ ++++++DE T F +IL +R ++AR LE +P+ I+ G+S + Sbjct: 86 IARRLGLSKRTLQRRIEDEGTSFQQILKETREALARHYLEETPLPVADISFLLGFSEPNS 145 Query: 218 FINTFRQYYGVTPHQ 232 F FR + G TP Q Sbjct: 146 FYRAFRAWTGTTPDQ 160 >UniRef50_A6CLV0 AraC-type DNA-binding domain-containing protein n=1 Tax=Bacillus sp. SG-1 RepID=A6CLV0_9BACI Length = 525 Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 1/82 (1%) Query: 155 LRDIAERMYTSESLIKKKL-QDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYS 213 L++IA+R Y S I +K QD + + L + RM A+ LL+ + ++ +A GY Sbjct: 438 LQEIADRFYLSREYISRKFKQDYDATITDYLTSIRMEKAKNLLKNPYLKIYEVAYGVGYQ 497 Query: 214 STSYFINTFRQYYGVTPHQFAQ 235 + YF F+++ GVTP+++ Q Sbjct: 498 NEKYFSKVFKKHEGVTPNEYRQ 519 >UniRef50_C4UFJ5 Uncharacterized HTH-type transcriptional regulator ybcM n=1 Tax=Yersinia ruckeri ATCC 29473 RepID=C4UFJ5_YERRU Length = 275 Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 52/107 (48%) Query: 129 LLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASR 188 L +S +TV+ + + L+ + RW R +AE+++ S S + L E F +IL R Sbjct: 151 FLDSSDNTVTARCQDLLILSPSARWSARTVAEQLHMSVSTFHRHLAAEGGSFQQILDDVR 210 Query: 189 MSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 + A ++ P+ IA GY S F + F++ Y +TP Q Sbjct: 211 LGNALNAIQTTSKPIGEIARDNGYQCPSRFTSRFQKRYQITPRALRQ 257 >UniRef50_UPI0001C372DF arabinogalactan endo-1,4-beta-galactosidase n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C372DF Length = 717 Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 1/79 (1%) Query: 159 AERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSY 217 AE MY S +K + F++ L+ +R++MA+ LL +P+ +AE CGY + Y Sbjct: 632 AESMYVSTMYFQKLYKQMFGIPFTRDLIEARIAMAKELLSETNLPVAEVAEACGYKNLPY 691 Query: 218 FINTFRQYYGVTPHQFAQH 236 FI F G TP+ F +H Sbjct: 692 FIRQFSHETGDTPNHFRKH 710 >UniRef50_Q88C44 Transcriptional regulator, AraC family n=16 Tax=cellular organisms RepID=Q88C44_PSEPK Length = 356 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/105 (27%), Positives = 55/105 (52%) Query: 129 LLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASR 188 L F G++ +L++ + L +A +M S +++ LQ + + ++L R Sbjct: 250 LEFTGRQAWLGRIRQLLAQQLDAAPGLEGLARQMNCSSRTLRRHLQALGSSYQQLLDELR 309 Query: 189 MSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 A++LL Q+P++ IAE G+S T+ F + F+++ GV P F Sbjct: 310 FERAKQLLADEQMPIYRIAETLGFSETASFRHAFQRWSGVAPSHF 354 >UniRef50_UPI0000F30067 putative transcriptional regulator AraC/XylS family protein n=1 Tax=Acinetobacter baumannii ATCC 17978 RepID=UPI0000F30067 Length = 194 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 10/120 (8%) Query: 123 KKELIPLLF----------NSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKK 172 K+EL+ L++ N ++S +V+ LIS+ ++ IA +++ S S +++K Sbjct: 67 KRELLELIYYSGYTAIAKLNMNKSLSERVQTLISYHLSTELTAEFIAAQLFMSSSTLRRK 126 Query: 173 LQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQ 232 L+ E I R+ L++ + IA +CGY S S F F+ +G+TP + Sbjct: 127 LKSEGNSIQDIRNRVRLGHGLHLIQTTNNSIGNIAFECGYQSQSRFTEQFKNLFGITPRE 186 >UniRef50_UPI0001851370 two component AraC family transcriptional regulator n=1 Tax=Bacillus coahuilensis m4-4 RepID=UPI0001851370 Length = 253 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 1/82 (1%) Query: 155 LRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYS 213 L+DIA+ Y S I +K ++ + + L+ RM A LL+ + ++ IAEK GY Sbjct: 162 LQDIADTFYISREYISRKFKEHFHLTITDYLVDLRMKKAMELLDRTNLKVYEIAEKVGYV 221 Query: 214 STSYFINTFRQYYGVTPHQFAQ 235 YF F+++ GVTP+ + Q Sbjct: 222 DDKYFRKVFKKFAGVTPNDYRQ 243 >UniRef50_C4L2Y3 Two component transcriptional regulator, AraC family n=1 Tax=Exiguobacterium sp. AT1b RepID=C4L2Y3_EXISA Length = 236 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 1/88 (1%) Query: 150 AKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAE 208 A+ L+ ++ER Y S I ++ + + S+ +L RM+ A+RLLE + ++ +A+ Sbjct: 144 AEELSLQGMSERFYLSREYISRRFKQQYGVNLSEYVLTIRMNEAKRLLETSRQRIYEVAQ 203 Query: 209 KCGYSSTSYFINTFRQYYGVTPHQFAQH 236 G+S YF F++ GVTP++F + Sbjct: 204 AVGFSDDKYFRKVFKKQVGVTPNEFREQ 231 >UniRef50_B2I0Q2 AraC-type DNA-binding domain-containing protein n=4 Tax=Acinetobacter RepID=B2I0Q2_ACIBC Length = 270 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 10/120 (8%) Query: 123 KKELIPLLF----------NSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKK 172 K+EL+ L++ N ++S +V+ LIS+ ++ IA +++ S S +++K Sbjct: 143 KRELLELIYYSGYTAIAKLNMNKSLSERVQTLISYHLSTELTAEFIAAQLFMSSSTLRRK 202 Query: 173 LQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQ 232 L+ E I R+ L++ + IA +CGY S S F F+ +G+TP + Sbjct: 203 LKSEGNSIQDIRNRVRLGHGLHLIQTTNNSIGNIAFECGYQSQSRFTEQFKNLFGITPRE 262 >UniRef50_C5EIB6 Transcriptional regulator n=3 Tax=Clostridiales RepID=C5EIB6_9FIRM Length = 320 Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 1/80 (1%) Query: 155 LRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYS 213 L+DIA R + I L E FS+ILL+ RM A LL+ + ++ IA GYS Sbjct: 239 LKDIAARFSYHPNYISTLLHRELGKSFSEILLSQRMERAVILLKGTDLTINEIALMLGYS 298 Query: 214 STSYFINTFRQYYGVTPHQF 233 ++S F FR+YYGV+P ++ Sbjct: 299 NSSNFYKAFREYYGVSPREY 318 >UniRef50_D0Z2K1 Transcriptional regulator AraC family n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z2K1_LISDA Length = 264 Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/94 (26%), Positives = 54/94 (57%) Query: 140 KVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELR 199 K+ + S D ++ + + + ++ S++ + ++L DE+T F ++L RM A LL+ + Sbjct: 164 KLTQFFSQDPSQNYTIEQVCQQFGLSKATLMRRLNDESTQFREVLAQVRMGHALSLLQEK 223 Query: 200 QIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 + +A++CGY S F F++ +G++P Q+ Sbjct: 224 SQTVLELAQQCGYQSEVRFTQRFQKQFGLSPKQY 257 >UniRef50_C8Q2W3 Transcriptional regulator, AraC family n=1 Tax=Pantoea sp. At-9b RepID=C8Q2W3_9ENTR Length = 285 Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 43/83 (51%) Query: 151 KRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKC 210 K W + + + SES ++++L+ E F ++LL RM A L++ L +A+ C Sbjct: 202 KGWTAKVAGDALAMSESTLRRRLRQEGVRFEQLLLDIRMHHALMLIQTTHWNLAQVADAC 261 Query: 211 GYSSTSYFINTFRQYYGVTPHQF 233 GY S S F FR +G +P Q Sbjct: 262 GYKSVSRFTERFRYRFGNSPAQL 284 >UniRef50_Q9Z3Q6 Transcriptional activator rhrA n=1 Tax=Sinorhizobium meliloti RepID=RHRA_RHIME Length = 314 Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 12/124 (9%) Query: 119 MFSHKKELIPLLFNSISTVS---------GKVERLISFDIAKRWY-LRDIAERMYTSESL 168 M +H +L+P+L I VS ++ + ++A + + D+AE + Sbjct: 181 MVAHFYDLLPVLAQDIGNVSPRETPHNRMASIKMRVEQNLANGSFSITDVAEAERITPRA 240 Query: 169 IKKKLQDENTCFSKILLASRMSMARRLL--ELRQIPLHTIAEKCGYSSTSYFINTFRQYY 226 I+K E T FS+ +L R+S+A+ L+ E + IA G++ SYF TFR Y Sbjct: 241 IQKFFSREGTTFSRYVLGRRLSLAKSLILAEGEATSISQIAYNVGFNDLSYFNRTFRSRY 300 Query: 227 GVTP 230 GV P Sbjct: 301 GVRP 304 >UniRef50_A9F3N3 Probable transcriptional regulator n=1 Tax=Phaeobacter gallaeciensis 2.10 RepID=A9F3N3_9RHOB Length = 350 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 4/116 (3%) Query: 118 SMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDEN 177 S H+ + P N++ V + +L R + ++ ++ S + +K++L+ EN Sbjct: 233 SRIEHELSVPPATLNTVGQVKWALGKLG----LSRGAVESVSALLHVSPATLKRRLKSEN 288 Query: 178 TCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 F I + R + +R L + L IAE+ GY + S F+Q++G++P F Sbjct: 289 ASFLDIKNSERFELVKRRLRSSDVTLSVIAEEAGYDNPSNLSKAFKQHFGLSPGAF 344 >UniRef50_A3M7C3 Putative transcriptional regulator (AraC family) n=2 Tax=Acinetobacter baumannii ATCC 17978 RepID=A3M7C3_ACIBT Length = 339 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 53/92 (57%), Gaps = 1/92 (1%) Query: 143 RLISFDIAKRWY-LRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQI 201 R + FD + ++ ++D+AE+++ +E ++++L E F +L R A++LL + Sbjct: 240 RELLFDEVEGFFKMKDVAEKLHLTERTLQRQLAKEGVTFQILLDQVRERHAKKLLNHHEY 299 Query: 202 PLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 + I+EK GYS ++F F+++ TP Q+ Sbjct: 300 SISYISEKLGYSEVTHFTRAFKRWTNQTPKQY 331 >UniRef50_C1DBS2 AraC-type DNA-binding domain-containing protein n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1DBS2_LARHH Length = 262 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 2/94 (2%) Query: 140 KVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELR 199 +V RL+ D+ +++ R+ SES +++ L DE ++ R+ A L++ Sbjct: 167 RVNRLLGTDLTL--GAAELSRRLAMSESTLRRHLADEGHSLRELREHCRLERALALVQTS 224 Query: 200 QIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 +P+ +AE CGY+S S F FR +G TP Sbjct: 225 SLPIGQVAEACGYASASRFSARFRTRFGCTPRSL 258 >UniRef50_UPI0001AF3354 AraC family transcriptional regulator n=1 Tax=Pseudomonas syringae pv. oryzae str. 1_6 RepID=UPI0001AF3354 Length = 298 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 35/54 (64%) Query: 182 KILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 + LLA R+ +AR+LL IPL IA CG++S S+F N FRQ G TP ++ Q Sbjct: 234 QYLLARRIELARQLLRHTVIPLGEIALACGFASASHFSNRFRQTVGATPGEYRQ 287 >UniRef50_A6X415 Helix-turn-helix-domain containing protein AraC type n=1 Tax=Ochrobactrum anthropi ATCC 49188 RepID=A6X415_OCHA4 Length = 339 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 54/227 (23%), Positives = 93/227 (40%), Gaps = 44/227 (19%) Query: 37 LADDFAFCSPD---------TRRLDIDELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPP 87 L D F SPD R+D L V Y +Q +N + R + PP Sbjct: 109 LPGDVVFLSPDKAYEWWLPEGGRVDCGRLPVS-YFPVSKQAVKNFLM----RPIPKAYPP 163 Query: 88 MPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFN-------------SI 134 + L+ G ++P + M+ +H ++++P++ ++ Sbjct: 164 LKLLITHGAYLLMRGAHAPGEAEMIA-------AHFRQVLPMVLEFLRDDHRKHRSGRNL 216 Query: 135 STVSGKVERLIS---FDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSM 191 S + +E +S FD+ + R + ++K Q ENT FS+ +L R+ M Sbjct: 217 SQIKAFIETGLSDATFDLGT------VTARFGVTARQVQKLFQAENTTFSRYVLERRLDM 270 Query: 192 AR-RLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 AR R+ + +IA + G+ SYF FRQ++G+TP S Sbjct: 271 ARLRVSRQNNRSISSIAYEVGFGDLSYFNRVFRQHFGMTPSAMRDQS 317 >UniRef50_C6CFN8 Transcriptional regulator, AraC family n=1 Tax=Dickeya zeae Ech1591 RepID=C6CFN8_DICZE Length = 307 Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 10/113 (8%) Query: 132 NSISTVSGKVERLISF-------DIAKRWYLRDIAERMYTSESLIKKKLQD--ENTCFSK 182 N+ + V G + +S D +K W + ++A S + + Q+ NT + Sbjct: 184 NAPAWVRGATDARLSLALQAMHGDTSKSWTVDELARMSNMSRATFARVFQEVLGNTPM-R 242 Query: 183 ILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 L RM++AR LL + IPL +AE+ GYSS F+ FR+++G P ++ Q Sbjct: 243 YLTDWRMTVARDLLRTQDIPLIEVAERVGYSSLYAFVTAFRRHHGQPPGKWRQ 295 >UniRef50_D1SRG9 Transcriptional regulator, AraC family n=1 Tax=Acidovorax avenae subsp. avenae ATCC 19860 RepID=D1SRG9_9BURK Length = 343 Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 48/79 (60%) Query: 155 LRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSS 214 L IA ++TSE +K++LQ E T F +++ S+ + A L+ ++ L +AE+ GY+ Sbjct: 258 LHHIAGLLHTSERTLKRRLQGEGTSFRQLVAQSQAASAAALVGEHRLSLTEVAERMGYAD 317 Query: 215 TSYFINTFRQYYGVTPHQF 233 S F F++++GV+P F Sbjct: 318 LSAFSQAFKRWHGVSPEGF 336 >UniRef50_A5VDX1 Transcriptional regulator, AraC family n=1 Tax=Sphingomonas wittichii RW1 RepID=A5VDX1_SPHWW Length = 331 Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 52/93 (55%) Query: 141 VERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQ 200 V RL++ L D+A R++ S ++++L D F +I+ R S+A + + + Sbjct: 227 VRRLVNTATDDAPSLSDVAARLHLSARTLRRRLADRGVSFMRIVDEERRSLALQYVMGGE 286 Query: 201 IPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 + + +IAE+ GYS ++ F + FR++ G +P + Sbjct: 287 MTVESIAERLGYSESANFRHAFRRWTGSSPRNY 319 >UniRef50_A1TWU6 Transcriptional regulator, AraC family n=2 Tax=Marinobacter RepID=A1TWU6_MARAV Length = 347 Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 43/79 (54%) Query: 155 LRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSS 214 L +A +Y SE +K++LQ+E F ++ R+ AR LL + L IA+ GY+ Sbjct: 258 LARVASTLYVSERTLKRRLQEEEASFQALVDQVRLERARDLLASTTMNLSQIADSLGYAD 317 Query: 215 TSYFINTFRQYYGVTPHQF 233 + F F+++ G++P F Sbjct: 318 AANFTRAFKRWTGLSPSHF 336 >UniRef50_A8KZG5 Transcriptional regulator, AraC family n=9 Tax=Actinomycetales RepID=A8KZG5_FRASN Length = 330 Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 7/85 (8%) Query: 153 WYLRDIAERMYTSESLIKKKLQDENTCFSKILLA----SRMSMARRLLELRQIPLHTIAE 208 W +R++ R+ S ++ ++ K LA RM+MA RLL PL +A Sbjct: 227 WTVRELGARVGLSRTVFAQRF---TALVGKPPLAYLTWWRMTMAARLLRETDSPLPAVAR 283 Query: 209 KCGYSSTSYFINTFRQYYGVTPHQF 233 +CGYSS F TF++ +GV P F Sbjct: 284 RCGYSSEFAFAKTFKREFGVPPGAF 308 >UniRef50_B5JUK1 AraC-type DNA-binding domain-containing protein n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JUK1_9GAMM Length = 332 Score = 53.5 bits (127), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 27/101 (26%), Positives = 54/101 (53%), Gaps = 1/101 (0%) Query: 136 TVSGKVERLISFDIA-KRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARR 194 + +G++ LI +DI +AE++ S ++++L++E T + ++ R +A Sbjct: 228 SYAGRIRALIGYDIECDLPAFESVAEQLGLSPQTLRRRLKEEGTSYQELKDLIRRDIALH 287 Query: 195 LLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 L Q +H IA+K G++ S F F+++ G+TP + Q Sbjct: 288 FLNKPQYSIHEIAQKVGFAEPSAFHRAFKKWVGLTPSDYRQ 328 >UniRef50_UPI0001C37E0B transcriptional regulator, LacI family protein n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37E0B Length = 746 Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 1/86 (1%) Query: 153 WYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCG 211 W + DIA S+S ++ ++ NT ++ +R+ A+RLLE + IAE+CG Sbjct: 657 WNVDDIAHEAGISKSYFQRLYRETFNTSCMDDIINARIERAKRLLENTDRQIGDIAEECG 716 Query: 212 YSSTSYFINTFRQYYGVTPHQFAQHS 237 Y+S S+F+ FRQ G+T ++ +++ Sbjct: 717 YASGSHFMRQFRQKTGLTASEYRKNA 742 >UniRef50_Q5DYZ5 Transcriptional regulatory protein, AraC-like protein n=2 Tax=Vibrio fischeri RepID=Q5DYZ5_VIBF1 Length = 261 Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 53/105 (50%) Query: 129 LLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASR 188 L S ++ K+ S D A+ + L +++ S + + ++L + T F +L R Sbjct: 151 LFSESHDSLQNKLSAYFSKDPAENYQLDEVSHAFSMSRATLIRRLNQDGTNFRTVLANVR 210 Query: 189 MSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 MS A L++ R+ +A +CGY S + F F Q +G+TP Q+ Sbjct: 211 MSHALSLMQERKQSQLDLALQCGYQSETRFSQRFHQQFGITPKQY 255 >UniRef50_D0BWN3 Transcriptional regulator n=1 Tax=Acinetobacter sp. RUH2624 RepID=D0BWN3_9GAMM Length = 263 Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 45/82 (54%) Query: 153 WYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGY 212 W + R+ S + +++KL E+T + + +R++ A LL +++P+ TIA K GY Sbjct: 180 WQSSEFEMRLGLSSATLRRKLSHEDTTLRETITHARLTYALELLYSKKLPMKTIAAKSGY 239 Query: 213 SSTSYFINTFRQYYGVTPHQFA 234 S + F + F + YGV P A Sbjct: 240 QSVAIFRDRFVERYGVDPAVLA 261 >UniRef50_C9RT55 Two component transcriptional regulator, AraC family n=4 Tax=Bacillales RepID=C9RT55_GEOSY Length = 259 Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 7/89 (7%) Query: 155 LRDIAERMYTSES----LIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKC 210 L+D+AE ++ + S L K+++Q FS+ L RM A+ LL + + IAE+C Sbjct: 173 LKDVAEHVHLNPSYFSTLFKEQMQ---LTFSEYLTRRRMQRAKELLMTTDMTVAEIAEEC 229 Query: 211 GYSSTSYFINTFRQYYGVTPHQFAQHSPG 239 GY + YFI+ F++ G TP + + G Sbjct: 230 GYRTAKYFIHLFKEMEGKTPSSYRKSQKG 258 >UniRef50_A7MK74 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=A7MK74_ENTS8 Length = 304 Score = 53.1 bits (126), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 1/85 (1%) Query: 153 WYLRDIAERMYTSESLIKKKLQDENTCFSKILLAS-RMSMARRLLELRQIPLHTIAEKCG 211 W L +A R + S + + + L RM+ A RLLE Q + +AE CG Sbjct: 216 WTLESMAARCFLSRATFARHFASRYPLTPQAWLNQVRMARAARLLEREQDAIGRVAEACG 275 Query: 212 YSSTSYFINTFRQYYGVTPHQFAQH 236 Y + + F F+ +GVTP QF Q Sbjct: 276 YLTQAAFSKAFKNAWGVTPGQFRQQ 300 >UniRef50_A8SQM8 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=A8SQM8_9FIRM Length = 523 Score = 53.1 bits (126), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%) Query: 181 SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 SK + + RM AR +LE + I CGY + SYF ++FR++YGV+P +F + Sbjct: 462 SKFIKSYRMERARDMLENSMAKIVDIGAMCGYQNVSYFCSSFREFYGVSPQKFRE 516 >UniRef50_Q4KDB9 Transcriptional regulator, AraC family n=1 Tax=Pseudomonas fluorescens Pf-5 RepID=Q4KDB9_PSEF5 Length = 363 Score = 53.1 bits (126), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 50/78 (64%) Query: 158 IAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSY 217 +A +++ S S ++++L+ ++T + ++L R + A++LL +P++ IAE G+ T+ Sbjct: 272 LARQVHCSPSTLRRRLRAQDTSYQQLLDELRYARAQQLLGQHSLPIYRIAEALGFKETAS 331 Query: 218 FINTFRQYYGVTPHQFAQ 235 F + F+++ GV P +F Q Sbjct: 332 FRHAFQRWSGVAPGRFRQ 349 >UniRef50_C9Y4B2 Putative uncharacterized protein n=1 Tax=Cronobacter turicensis RepID=C9Y4B2_CROTZ Length = 312 Score = 53.1 bits (126), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 1/85 (1%) Query: 153 WYLRDIAERMYTSESLIKKKLQDENTCFSKILLAS-RMSMARRLLELRQIPLHTIAEKCG 211 W L +A R + S S + + L RM+ A RLLE Q + +AE CG Sbjct: 224 WTLESMAARCFLSRSTFARHFASRYPLTPQGWLNQVRMARAARLLEREQRAIGRVAEACG 283 Query: 212 YSSTSYFINTFRQYYGVTPHQFAQH 236 Y + + F F+ +GVTP QF Q Sbjct: 284 YLTQAAFSKAFKSAWGVTPGQFRQQ 308 >UniRef50_Q1QJK3 Transcriptional regulator, AraC family n=1 Tax=Nitrobacter hamburgensis X14 RepID=Q1QJK3_NITHX Length = 332 Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 33/79 (41%), Positives = 43/79 (54%), Gaps = 9/79 (11%) Query: 158 IAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLH------TIAEKCG 211 IA R S ++K QDE+T FS +L+ R+ +RRLL P H +IA G Sbjct: 245 IAARHGISPRYVRKLFQDEHTTFSDFVLSLRLEWSRRLL---LSPGHATCTIASIAHASG 301 Query: 212 YSSTSYFINTFRQYYGVTP 230 +S SYF TFR+ Y VTP Sbjct: 302 FSDLSYFNRTFRRRYAVTP 320 >UniRef50_Q1N6M1 Probable transcriptional regulator n=1 Tax=Bermanella marisrubri RepID=Q1N6M1_9GAMM Length = 340 Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 45/79 (56%) Query: 155 LRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSS 214 + ++AE M S ++KL + T +S++L R +A L+ Q P+ I+E+ G+S Sbjct: 257 IEEVAEYMGMSVRSTQRKLSEFGTSYSQVLDGIRKELAMTYLKQTQNPMIFISERLGFSE 316 Query: 215 TSYFINTFRQYYGVTPHQF 233 S F F+++ GVTP QF Sbjct: 317 QSAFQRAFKRWTGVTPKQF 335 >UniRef50_B8KNS6 Transcriptional regulator, AraC family n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KNS6_9GAMM Length = 248 Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 43/77 (55%) Query: 157 DIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTS 216 DIA + S+ + ++LQ+EN F +L R S+A + L +P+ +A + G++ S Sbjct: 167 DIARELGLSKRSLYRRLQEENATFQGLLDDVRASVAIQFLSSTSLPVEEVAHRVGFADPS 226 Query: 217 YFINTFRQYYGVTPHQF 233 F FR++ GVTP + Sbjct: 227 NFRKAFRRWTGVTPRSY 243 >UniRef50_A8I129 Transcriptional regulatory protein n=1 Tax=Azorhizobium caulinodans ORS 571 RepID=A8I129_AZOC5 Length = 316 Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 13/128 (10%) Query: 121 SHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESL----------IK 170 +H ++L LF G + + + RD A R + ES+ ++ Sbjct: 184 NHLRDLAGTLFGLDDPAQGALSPAVRLAAIRYQVDRDYARRDLSVESVARLHGVTGRYVQ 243 Query: 171 KKLQDENTCFSKILLASRMSMARRLLELRQIP---LHTIAEKCGYSSTSYFINTFRQYYG 227 K E T FS+ LL R++ A LL + P + T+A + G+ SYF+ TFR YG Sbjct: 244 KLFAQEGTTFSRYLLERRLAAAHALLTSEEGPRARIATVALEAGFGDLSYFVRTFRTRYG 303 Query: 228 VTPHQFAQ 235 P ++ Sbjct: 304 APPSHISK 311 >UniRef50_C6CVC0 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CVC0_PAESJ Length = 539 Score = 53.1 bits (126), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 53/93 (56%), Gaps = 1/93 (1%) Query: 145 ISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTC-FSKILLASRMSMARRLLELRQIPL 203 I+ A+ L+DIA+ ++ S + I + + E +++ L+ RM A+ LL+ + + + Sbjct: 443 ITLHYAEDLMLQDIADHVHLSRTYISELFKKETGMNYNEYLMQVRMEKAKELLKRQTLKV 502 Query: 204 HTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 A GYS+TSYFI F+ Y G++P ++ + Sbjct: 503 ADAAALVGYSNTSYFIKLFKNYTGLSPSEYMEQ 535 >UniRef50_B1YT91 Transcriptional regulator, AraC family n=2 Tax=Burkholderiaceae RepID=B1YT91_BURA4 Length = 247 Score = 53.1 bits (126), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 43/76 (56%) Query: 157 DIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTS 216 D+A ++ S +K+KL + +S +L R+ A RLLE ++P+ IA + GY+ + Sbjct: 170 DVARELHVSARTLKRKLAEFGATYSTLLDEIRLRDALRLLEGTRLPVDEIAARVGYTDRA 229 Query: 217 YFINTFRQYYGVTPHQ 232 F F+++ GV P + Sbjct: 230 NFTRAFKRWTGVAPSE 245 >UniRef50_C0EIY2 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EIY2_9CLOT Length = 252 Score = 52.8 bits (125), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 5/94 (5%) Query: 141 VERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELR 199 V + IS D+ + IAE ++ + + + E S+ + + R++MA+ LL Sbjct: 155 VSQFISHDLTRE----QIAELVHLAPDYLSHLFKKETGVTLSEYIASQRLTMAKYLLAQT 210 Query: 200 QIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 +P+ +IA+K GYS SYF F++ YG+TP ++ Sbjct: 211 SLPVSSIADKVGYSYVSYFNRVFKKAYGMTPVEY 244 >UniRef50_B5JTW9 Helix-turn-helix-domain containing protein, AraC type n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JTW9_9GAMM Length = 350 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 2/113 (1%) Query: 123 KKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSK 182 + EL+ L N + V+G V I + L +AE+++ S +K++LQ T + + Sbjct: 235 EAELVRL--NVRNDVAGMVRLQIQDWEGRLPTLEQVAEQLHMSPRTLKRRLQTAGTSYQQ 292 Query: 183 ILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 I +SR A LE L +IAE GYS S F F+ + +TP +F Q Sbjct: 293 IKDSSRFRRAIHQLEATDSSLESIAELLGYSDASNFTKAFKSWAEMTPSEFRQ 345 >UniRef50_Q1GHD7 Transcriptional regulator, AraC family n=2 Tax=Rhodobacteraceae RepID=Q1GHD7_SILST Length = 336 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 43/82 (52%) Query: 157 DIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTS 216 D+A M SE + ++L DE F +L ++ S+A+ LL+ + + IA G+S S Sbjct: 253 DVAREMGMSERTLYRRLADEGLTFRDVLTEAQSSLAQELLKDSRSSIAEIAFLTGFSEQS 312 Query: 217 YFINTFRQYYGVTPHQFAQHSP 238 F F+++ G P QF Q P Sbjct: 313 TFSRAFKRWVGQAPAQFRQQFP 334 >UniRef50_C6CT66 Two component transcriptional regulator, AraC family n=2 Tax=Bacillales RepID=C6CT66_PAESJ Length = 262 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 1/80 (1%) Query: 155 LRDIAERMYTSESLIKKKLQDENT-CFSKILLASRMSMARRLLELRQIPLHTIAEKCGYS 213 +RDIA+ ++ + S +++ FS L R+ A+ LL ++ ++ IAEK GY Sbjct: 171 MRDIADHLHMNASYFSVLFKEQTGLTFSDYLTRRRVQRAKELLTNTRLSINEIAEKAGYQ 230 Query: 214 STSYFINTFRQYYGVTPHQF 233 + YF+ FR + GV+P Q+ Sbjct: 231 TAKYFVKVFRSHEGVSPGQY 250 >UniRef50_C3K2A2 Putative putative AraC-family regulatory protein n=1 Tax=Pseudomonas fluorescens SBW25 RepID=C3K2A2_PSEFS Length = 384 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 1/82 (1%) Query: 155 LRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSS 214 L I+E ++ S +K++L++E T F K+L R A LL+ L IAE+ G+S Sbjct: 297 LSSISELLHVSPRTLKRRLKEEGTTFRKLLADVRSRNAINLLKDGH-NLTEIAERLGFSD 355 Query: 215 TSYFINTFRQYYGVTPHQFAQH 236 S F F++++G++P QF+Q Sbjct: 356 LSSFSQAFKRWHGISPSQFSQQ 377 >UniRef50_UPI0001C379B1 transcriptional regulator, AraC family protein n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C379B1 Length = 259 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 55/96 (57%), Gaps = 3/96 (3%) Query: 140 KVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE--NTCFSKILLASRMSMARRLLE 197 K+ + I D W + DIA+++ S S ++ ++ +C + + + SRM A++LL Sbjct: 159 KLRKQIYDDPGHEWSIPDIADKLSISVSHFQRLYKNRFGVSCMNDVFM-SRMYYAKQLLM 217 Query: 198 LRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 ++P IAEKCG+++ YF +F +Y V+P ++ Sbjct: 218 NTELPAKEIAEKCGFNNYEYFSRSFTKYACVSPVKY 253 >UniRef50_Q5DYJ4 Transcriptional regulator, AraC family n=1 Tax=Vibrio fischeri ES114 RepID=Q5DYJ4_VIBF1 Length = 269 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/106 (25%), Positives = 56/106 (52%) Query: 132 NSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSM 191 N+ +V + L+ W L +++ + T+ S +++ L+ EN FSK+LL R+ + Sbjct: 156 NTKRSVKSLISELVKKSPEHSWTLITVSKELNTTPSTLRRHLKKENISFSKLLLKIRLGL 215 Query: 192 ARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 L + ++ G++S++YF + F++ Y +TP +F +S Sbjct: 216 GLNYLTFSNHSILKVSYLSGFNSSAYFCDVFKKEYHMTPSEFRINS 261 >UniRef50_A6FAQ6 Probable transcriptional regulator n=1 Tax=Moritella sp. PE36 RepID=A6FAQ6_9GAMM Length = 309 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 1/94 (1%) Query: 140 KVERLISFDIAKRWY-LRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLEL 198 +V ISF + Y L DIA M+ S+ +++KL ++NT FS +L + R +MA + L+ Sbjct: 208 RVSNAISFSLTNSVYRLEDIASSMHYSQRTLQRKLGEQNTSFSALLDSVRFNMANQYLKN 267 Query: 199 RQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQ 232 IA GY+S S F ++ ++ G+ P++ Sbjct: 268 SYYRQTDIAVLLGYNSLSAFSRSYHRWSGIYPNE 301 >UniRef50_C9Z0D8 Arabinose operon regulatory protein n=2 Tax=Streptomyces RepID=C9Z0D8_STRSW Length = 307 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 1/95 (1%) Query: 140 KVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLEL 198 + E LI+ D +R +AE + S S ++ ++L +R+ A RLLE Sbjct: 204 RAEDLIAADPGAPHTVRSLAESVALSPSRFAHLFTEQLGHSPMRVLHHARLRHAARLLEA 263 Query: 199 RQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 ++P+ +A G+ S S+F FR+ YGV P Q+ Sbjct: 264 TELPVERVAGASGFGSPSHFSRAFRERYGVPPGQY 298 >UniRef50_C4STM8 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain n=3 Tax=Yersinia RepID=C4STM8_YERFR Length = 331 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 1/84 (1%) Query: 148 DIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLA-SRMSMARRLLELRQIPLHTI 206 ++AK W + +A + SE ++ KI L RM A+ LLE Q+ + + Sbjct: 238 ELAKNWTISQMAAELALSERTFLRRFAASTGQTPKIWLQHERMHAAKELLERDQMNIVDV 297 Query: 207 AEKCGYSSTSYFINTFRQYYGVTP 230 AE CG+ + F N FRQ G+TP Sbjct: 298 AEYCGFQTVEGFRNAFRQTVGITP 321 >UniRef50_C9L8L2 Transcriptional regulator, AraC family n=2 Tax=Clostridiales RepID=C9L8L2_RUMHA Length = 191 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 1/75 (1%) Query: 158 IAERMYTSESLIKKKLQDENTC-FSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTS 216 +AE++Y S + + E ++ + A RM A+ LLE Q + IA++ G+S+ S Sbjct: 101 LAEKVYLSPGYLSYIFKQETGMNLNRFIKAFRMDKAKELLENSQKKISQIAKEVGFSNNS 160 Query: 217 YFINTFRQYYGVTPH 231 YF +FR+Y+GVTP Sbjct: 161 YFCRSFREYFGVTPE 175 >UniRef50_C6JC64 Two component transcriptional regulator n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JC64_9FIRM Length = 276 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 7/134 (5%) Query: 114 LSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWY----LRDIAERMYTSESLI 169 LS F K + + + + SG ++ +++ DIA+ + L D+AE+ + SES I Sbjct: 131 LSQKDEFGEKHDAVSQVNSLFVQSSGAIKSILT-DIAQNYEQNISLADLAEKYHFSESYI 189 Query: 170 KKKLQDENT-CFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGV 228 +K++ E F IL R+ A LL+ + + + EK G++ YF F++ +G Sbjct: 190 SRKIKKETGYTFVDILNGIRLMCAASLLKTGE-KISDVCEKTGFNDQHYFSQLFKKTFGC 248 Query: 229 TPHQFAQHSPGTFS 242 TP + S TFS Sbjct: 249 TPSNYRSESGETFS 262 >UniRef50_Q2RW15 Transcriptional regulator, AraC family n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RW15_RHORT Length = 347 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 58/104 (55%), Gaps = 4/104 (3%) Query: 139 GKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD--ENTCFSKILLASRMSMARRLL 196 G+ L+ D+ K W ++D+A + +E+ +K + +N+ ++ L RM A L Sbjct: 237 GQARELLIGDLDKTWKIKDLARHVGMNENKLKAGFRQIYDNSIYA-YLQDWRMRAASHRL 295 Query: 197 ELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ-HSPG 239 + + + +A GYS+ ++F FR+Y+GV+P ++A+ +PG Sbjct: 296 KQGEDSVTGVALSVGYSNPAHFAKVFRRYFGVSPSRYAEDGAPG 339 >UniRef50_Q1R0K4 Transcriptional regulator, AraC family n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1R0K4_CHRSD Length = 234 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 1/95 (1%) Query: 145 ISFDIAKRWYLRDIAERMYTSESLIKKKLQD-ENTCFSKILLASRMSMARRLLELRQIPL 203 + D+A W +RD A R + +E+ ++ + L A R+ A L+ ++ L Sbjct: 137 VEADLAYPWRIRDWAARCHMTEAAFARRFRHLTGVAPHAWLTARRLQRACELMRDPRLTL 196 Query: 204 HTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSP 238 IA+ CG+ +++F + FR ++ +P Q+ Q P Sbjct: 197 TEIAQACGFHDSAHFAHAFRAHHACSPRQWRQRQP 231 >UniRef50_B2ICW5 Transcriptional regulator, AraC family n=1 Tax=Beijerinckia indica subsp. indica ATCC 9039 RepID=B2ICW5_BEII9 Length = 338 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 47/76 (61%) Query: 155 LRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSS 214 ++D+A+ + + + + L++E F ++ R+++A LL+ R + + IA + GYSS Sbjct: 254 MKDVAKDLCVTPRTLHRHLEEEGVTFLELRDEVRLTLAENLLQNRNLLVKDIASRLGYSS 313 Query: 215 TSYFINTFRQYYGVTP 230 + FI+ FR++ G+TP Sbjct: 314 ATSFISAFRRWKGMTP 329 >UniRef50_Q03Q27 Transcriptional regulator, AraC family n=1 Tax=Lactobacillus brevis ATCC 367 RepID=Q03Q27_LACBA Length = 362 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 58/236 (24%), Positives = 104/236 (44%), Gaps = 46/236 (19%) Query: 37 LADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRNLGLH----------SKDRLLINQSP 86 L DDF + + ++ +LT Y + + RN+ + SK RL +++S Sbjct: 39 LKDDFVYINHSAIEDNLAQLTFSDYA--VFPVSRNIQMWGAILCESVNVSKKRLFLSRSY 96 Query: 87 PMPLVTAIFD--SFNESGVNSPILSNMLYL--SCLSMFSHKKELIPL------------- 129 L+T IFD + + V P+ S+ + + ++F + PL Sbjct: 97 LENLMTQIFDEDTLGKVSVWEPLTSDQVGQINNLHALFHPTGDTDPLQAVLAPNAVIAGH 156 Query: 130 ------LFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSES----LIKKKLQDENTC 179 F SIS +++ I I+ L ++A+R Y S S L KK L Sbjct: 157 TIDNDEAFRSISLAIDYIQKNIQRPIS----LNEVAQRAYLSPSYLSRLFKKYLH---VN 209 Query: 180 FSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 F + + ++++A+ L L P++ I+ + G++ TSYF F++ G+TP +F Q Sbjct: 210 FIEYVNNQKIALAQEKLSLTLTPINQISNQIGFTQTSYFTKIFKKKTGITPSEFRQ 265 >UniRef50_C5T089 Transcriptional regulator, AraC family n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T089_ACIDE Length = 302 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/111 (25%), Positives = 60/111 (54%), Gaps = 1/111 (0%) Query: 121 SHKKELIPLLFNSISTVSGKVERLISFDIAKR-WYLRDIAERMYTSESLIKKKLQDENTC 179 +H ++L+ + + +S +V R ++ +A L+ +A+R++ SE ++++L TC Sbjct: 184 AHAEQLLAVHVPAHENISAQVRRQLADGMANGPITLKSVAQRLHLSERSLQRRLDAAGTC 243 Query: 180 FSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTP 230 F+K++ R +A R + ++ L +A G++ S F F+ + G TP Sbjct: 244 FAKLVDEVRHELAMRYIADERLTLGEVAYLLGFAEPSPFHRAFKCWTGTTP 294 >UniRef50_UPI0001693CE5 response regulator receiver protein n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693CE5 Length = 425 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 6/99 (6%) Query: 133 SISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSM 191 ++ T+ VER I D+ L +A+R+Y + S + + + E F++ +L +M Sbjct: 327 TVKTILELVEREIDQDLT----LDTVADRLYVNASYLSRLFKQETGKTFTQHVLGRKMEQ 382 Query: 192 ARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTP 230 AR L + + A + GY SYFI FR+Y+G TP Sbjct: 383 ARMCL-MEGCQVQETAYQLGYKDVSYFIKVFRKYWGTTP 420 >UniRef50_A8H057 Transcriptional regulator, AraC family n=2 Tax=Shewanella RepID=A8H057_SHEPA Length = 344 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 3/116 (2%) Query: 125 ELIPLLFNSIST--VSGKVERLISFDIAKRWYLRD-IAERMYTSESLIKKKLQDENTCFS 181 E I F SI + S +V + IS + RD IA+ + S +++KL++E T FS Sbjct: 226 EAIQAYFQSIVSQPFSQRVSKEISIAMTLGNPDRDAIAKAFHMSSRNLQRKLREEGTSFS 285 Query: 182 KILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 + + R +A++ L Q+ + IA + G+ S F F+++YGV+P Q+ Q + Sbjct: 286 EQVEQLRKDLAQKYLATPQLSMLEIAFRLGFKDPSNFTRAFKRWYGVSPLQYRQKN 341 >UniRef50_D0LMC0 Transcriptional regulator, AraC family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LMC0_HALO1 Length = 341 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 44/79 (55%) Query: 155 LRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSS 214 L +A+ + S ++++L+D T F+ ++ R S AR L + + + IA GYS Sbjct: 252 LGTVAQAVGMSTRTLQRRLRDAGTSFAAVVEEERSSAARAYLGDQALAVSEIAYLLGYSE 311 Query: 215 TSYFINTFRQYYGVTPHQF 233 S F+ F+++ G TP+QF Sbjct: 312 ASAFVRAFKRWTGKTPNQF 330 >UniRef50_B5XWK6 Transcriptional regulator, AraC family n=5 Tax=Klebsiella RepID=B5XWK6_KLEP3 Length = 306 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 1/95 (1%) Query: 143 RLISFDIAKRWYLRDIAERMYTSESLIKKKLQD-ENTCFSKILLASRMSMARRLLELRQI 201 RL+ A+RW + D+A S S + ++ D LL RM++A + L I Sbjct: 202 RLLHQAPARRWTVNDLAADCALSRSTLFERFTDLTGMTPMGYLLGWRMTLAMQWLSETGI 261 Query: 202 PLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 + IAE+ GY S S F F +Y G++P ++A+ Sbjct: 262 SIADIAERIGYGSASAFSVAFTRYTGISPGKYARQ 296 >UniRef50_Q65NG7 Putative uncharacterized protein n=1 Tax=Bacillus licheniformis ATCC 14580 RepID=Q65NG7_BACLD Length = 400 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 70/145 (48%), Gaps = 14/145 (9%) Query: 95 FDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWY 154 F E+G ++P C + H ++ + FN IS V + + + +R + Sbjct: 259 FAKLAENGRSAP--------QC---YQHCRQQVSKAFN-ISPVVIRAKEYMQKHFTEREF 306 Query: 155 -LRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGY 212 L+ +A+ + S + + ++ E F ++L RM A LLE + +H IAE+ GY Sbjct: 307 SLKQMADALQVSSVYLSRMMKKELGVTFVQLLTEMRMDQAVHLLETTPLSIHDIAEQTGY 366 Query: 213 SSTSYFINTFRQYYGVTPHQFAQHS 237 + YF F++ GV+P+Q+ + S Sbjct: 367 DTQHYFSTVFKKTMGVSPNQYRRMS 391 >UniRef50_Q9KFJ6 Transcriptional regulator (AraC/XylS family) n=2 Tax=Bacillus RepID=Q9KFJ6_BACHD Length = 769 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 57/101 (56%), Gaps = 1/101 (0%) Query: 136 TVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARR 194 T+S ++ +I + L IAER++ + + + + E N FS+ L + R++MA++ Sbjct: 665 TISDQIIHIIQNEFDMELTLESIAERLHYNPNYLSSIFRKETNISFSEYLSSYRLAMAKK 724 Query: 195 LLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 L +P+ IAE+ Y ++ FI +F++ G+TP ++ Q Sbjct: 725 WLLETSMPIREIAERLCYGNSQNFIRSFKKKEGMTPGKYRQ 765 >UniRef50_C4V4H7 Response regulator n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V4H7_9FIRM Length = 261 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 1/114 (0%) Query: 125 ELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKL-QDENTCFSKI 183 E+ P + +GK+ R I D A+R LRDI+ SE+ ++K QD F+ Sbjct: 141 EIFPSAGAPVGKYTGKLLRRIRADYAERLSLRDISAEYGVSETYLQKCFKQDTKYTFNDF 200 Query: 184 LLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 L R+ A L ++ I + G+ YF F++Y TP QF S Sbjct: 201 LNRYRILRAAEYLRAGDGRIYEIGARVGFQDYKYFTLVFKKYMNCTPGQFRTRS 254 >UniRef50_C6CT05 Two component transcriptional regulator, AraC family n=2 Tax=Bacillales RepID=C6CT05_PAESJ Length = 397 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 34/60 (56%) Query: 174 QDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 Q+ T F +L A+RM A RLL +H IAEK GY S YF F++ G+ P+Q+ Sbjct: 334 QEMGTSFISMLTAARMKEAIRLLNETDQAIHEIAEKTGYESQHYFSTAFKKTTGLPPNQY 393 >UniRef50_Q0TS33 Transcriptional regulator, AraC family n=6 Tax=Clostridium perfringens RepID=Q0TS33_CLOP1 Length = 506 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/104 (25%), Positives = 55/104 (52%), Gaps = 1/104 (0%) Query: 135 STVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMAR 193 +++ KV ++I + + L IA+++ + + + + E + K + RM+ A+ Sbjct: 402 KSIANKVIKIIKNEYSSELSLDYIADKVNFTPTYLSYVFKKETGSNIVKYITDFRMNKAK 461 Query: 194 RLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 LE + + + + CGY + SYF F+ Y+GVTP+QF + + Sbjct: 462 EFLEEGNMKIVQVGKACGYENQSYFNRIFKNYFGVTPNQFKRKN 505 >UniRef50_UPI0001C3522D two-component system, response regulator YesN n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C3522D Length = 495 Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 1/99 (1%) Query: 138 SGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTC-FSKILLASRMSMARRLL 196 S K+ + I + + L DI+ Y S + + + E C K + R+ A +LL Sbjct: 393 SDKIRQYIYQNYTQPLSLNDISSHFYISPNYLCSVFKKETGCNLMKFINEYRLEQAAKLL 452 Query: 197 ELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 ++ ++ IAE G+S+ SYF FR YYG +P + Q Sbjct: 453 LETEMKVNKIAETVGFSNPSYFSQRFRDYYGESPENYRQ 491 >UniRef50_Q1LBV4 Transcriptional regulator, AraC family n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LBV4_RALME Length = 348 Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 51/96 (53%) Query: 142 ERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQI 201 +RLI DIA ++A M ++ ++++L E + I+ A R A RLLE ++ Sbjct: 248 KRLIQRDIAHLPAQAELAATMGLTDKALRRRLFQEGQSYRAIVDALRRDAAIRLLEQSRL 307 Query: 202 PLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 + I + G+S S F FR+ G+TP+QF + + Sbjct: 308 SVAEIGIRLGFSEPSAFHRAFRRATGLTPNQFRRQA 343 >UniRef50_Q2SUV3 Transcriptional regulator, AraC family n=34 Tax=pseudomallei group RepID=Q2SUV3_BURTA Length = 398 Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/96 (25%), Positives = 53/96 (55%) Query: 138 SGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLE 197 +G+V R ++ D A+ + +A + S ++++L DE T + ++ R ++A LL Sbjct: 299 AGRVRRHLAGDPARGPTMDVLAAELGVSVRTLRRRLADEGTDYETVVDEIREALAEALLA 358 Query: 198 LRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 + + ++E+ GYS S F FR++ ++P+++ Sbjct: 359 TTTLTVAEVSERLGYSEPSAFARAFRRWKAMSPNEY 394 >UniRef50_C4G5Y3 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G5Y3_ABIDE Length = 518 Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 17/133 (12%) Query: 117 LSMFSHKKELIPLLFNSISTV-SGK---------VERLISFDIAKRWY----LRDIAERM 162 L F H +EL L + + SGK VE ++ + + +Y LR++AE Sbjct: 380 LYKFKHIEELENYLKEMVIVICSGKENTKKKSKIVEEIVHY-VEDNYYKNISLRELAENK 438 Query: 163 YTSESLIKKKL--QDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFIN 220 Y +L Q+ FSK L+ R+ A+ LLE + + + IA + GY+ S+FI Sbjct: 439 YFMNYSYCSRLFSQETGMTFSKYLIQYRLKKAKTLLENKDMKISFIAFEVGYNDVSHFIQ 498 Query: 221 TFRQYYGVTPHQF 233 +F++ YG+TP ++ Sbjct: 499 SFKKSYGLTPEEY 511 >UniRef50_Q7MJE3 AraC-type DNA-binding domain-containing protein n=1 Tax=Vibrio vulnificus YJ016 RepID=Q7MJE3_VIBVY Length = 243 Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 52/90 (57%) Query: 144 LISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPL 203 +I+ DI K+W ++I ++ S S + + L++E I+L R+ +++LL + + Sbjct: 146 IINSDIKKKWNYKEICSLLFVSHSTLYRTLKNEGKTLKMIVLHIRIINSQKLLVNTNMSI 205 Query: 204 HTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 + I+ +CG++S SYF F+ ++P ++ Sbjct: 206 NEISNRCGFNSPSYFSRKFKDSVKMSPTEY 235 >UniRef50_C4Z3B2 Two-component system, response regulator YesN n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z3B2_EUBE2 Length = 514 Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 1/77 (1%) Query: 158 IAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTS 216 +A+ +Y + S + + E SK + RM A+ LL + + I+E+ GY + S Sbjct: 431 LADMVYLAPSYLSSLFKKETGQNLSKYIKQYRMEKAKELLTGTNMKIVNISEQVGYPNVS 490 Query: 217 YFINTFRQYYGVTPHQF 233 YF+ +FR+Y+G++P +F Sbjct: 491 YFVQSFREYFGISPQKF 507 >UniRef50_Q3KCK4 Putative transcriptional Regulator, AraC family n=1 Tax=Pseudomonas fluorescens Pf0-1 RepID=Q3KCK4_PSEPF Length = 332 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 44/81 (54%) Query: 155 LRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSS 214 LRD+AE M S +++ L+ + + F +L +R SMA R L + L +A GY+ Sbjct: 245 LRDMAEYMMISPRTLQRYLRAQGSGFQALLDQTRRSMAARYLCDSSLSLTQVAGLLGYAD 304 Query: 215 TSYFINTFRQYYGVTPHQFAQ 235 S F F ++ GV+P Q+ Q Sbjct: 305 LSAFSRAFTRWNGVSPQQWKQ 325 >UniRef50_Q21JI5 Transcriptional regulator, AraC family n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21JI5_SACD2 Length = 344 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/97 (26%), Positives = 54/97 (55%), Gaps = 1/97 (1%) Query: 138 SGKVERLISFDIAKRWYLRD-IAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLL 196 + KV ++ D++ D +A +++ S + +++KLQ++NT + ++ RM A LL Sbjct: 245 ADKVRNILKKDVSASMPSSDEVASQLHMSTTTLRRKLQNDNTSYQRLKDECRMEAAFHLL 304 Query: 197 ELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 + + IA+K G+ S F +F+++ G TP ++ Sbjct: 305 NCADLSNNEIAQKLGFDEPSAFFRSFKKWTGQTPGEY 341 >UniRef50_A4BBD9 Transcriptional regulator, AraC family protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BBD9_9GAMM Length = 341 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 1/85 (1%) Query: 153 WYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGY 212 W IAE + S + + L E F + +R+SMA LL +Q+ IAE+ G+ Sbjct: 255 WGKERIAEALGMSGRHLNRNLSREGVTFKILADQTRLSMAEDLLA-QQVSKADIAERLGF 313 Query: 213 SSTSYFINTFRQYYGVTPHQFAQHS 237 + S F F+++ G+TP +F Q Sbjct: 314 NDESAFFKAFKRWTGLTPTEFEQRG 338 >UniRef50_B8IE97 Transcriptional regulator, AraC family n=2 Tax=Methylobacterium RepID=B8IE97_METNO Length = 380 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 43/80 (53%) Query: 158 IAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSY 217 ++ R+ S ++++L+ E T F+ I MS A+RLL P+ IA + GY+ ++ Sbjct: 248 VSRRLGLSRRTLQRRLEGEGTSFAMIQRGILMSEAKRLLAACDRPIGRIALELGYADAAH 307 Query: 218 FINTFRQYYGVTPHQFAQHS 237 F F + GVTP + Q S Sbjct: 308 FSRAFLDWTGVTPRYWRQTS 327 >UniRef50_A4XWL1 Transcriptional regulator, AraC family n=5 Tax=Bacteria RepID=A4XWL1_PSEMY Length = 364 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/94 (27%), Positives = 52/94 (55%) Query: 140 KVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELR 199 ++ RL+ D L +A++++TS +++ L++E T F ++ R +A L Sbjct: 266 QIRRLLGRDCRTWPDLEQVAQQLHTSPQTLRRHLREEGTSFQELKDHLRRDLAIYHLGRD 325 Query: 200 QIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 ++ +H IAE+ G+S S F F+++ G+TP + Sbjct: 326 ELAIHDIAEQLGFSEPSAFHRAFKKWTGLTPGAY 359 >UniRef50_C2LMQ1 Virulence regulon transcriptional activator VirF n=1 Tax=Proteus mirabilis ATCC 29906 RepID=C2LMQ1_PROMI Length = 263 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 59/226 (26%), Positives = 109/226 (48%), Gaps = 26/226 (11%) Query: 7 VILIRRS--FDIYHEQQKISLHNESILLLEKNLADD----------FAFCSPDTRRLDID 54 ++LIR+ I + K + N+SI+ ++KN A D F F S + +++ Sbjct: 21 LLLIRKDCEISITKDNVKYQIDNDSIVFIKKNSALDIILGKNKMPEFIFLSHEV-MMEVL 79 Query: 55 ELTVCHYLQNIRQLPRNLGLHSKDRLLINQS--PPMPLVTAIFDSFNESGV--NSPILSN 110 ++T+ + + + Q ++KD I Q+ + + + FN+ + N LS Sbjct: 80 KITINNKKEEVTQ------DNNKDS-FIKQANHEDILFFNRLKNKFNDEVITNNKTSLSQ 132 Query: 111 MLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIK 170 +L ++ L + LI L + S KV+ +I D+ W L++I+ +++ SES ++ Sbjct: 133 ILKIAYLLLNFDIPNLI--LKSKPELTSVKVKDIIISDLQHSWSLKEISSKLFISESSLR 190 Query: 171 KKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTS 216 KKL+ E T F +L RM+ A LL + + I+ GY +TS Sbjct: 191 KKLEAEKTNFMTLLTTVRMAHAMNLLATTNLTIGQISSLSGYKNTS 236 >UniRef50_C4TV58 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain n=1 Tax=Yersinia kristensenii ATCC 33638 RepID=C4TV58_YERKR Length = 332 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 1/81 (1%) Query: 151 KRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLA-SRMSMARRLLELRQIPLHTIAEK 209 K W + +A ++ SE ++ KI L RM A+ LLE QI + IAE Sbjct: 241 KNWSINQMAAQLALSERTFLRRFYVATGQTPKIWLQHERMHRAKELLERDQINIADIAEH 300 Query: 210 CGYSSTSYFINTFRQYYGVTP 230 CG+ + F N FRQ G+TP Sbjct: 301 CGFQTIEGFRNAFRQIVGITP 321 >UniRef50_C0X2X9 AraC family transcriptional regulator n=22 Tax=Enterococcus faecalis RepID=C0X2X9_ENTFA Length = 320 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 48/82 (58%), Gaps = 1/82 (1%) Query: 155 LRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYS 213 L ++A + + + + L+D+ N F++I+LA R+ +A+ L+ + + TI E+ GY Sbjct: 228 LAEVAAKFHFHPNYLSNFLKDKTNKTFTEIVLAYRIQLAKNYLKQTDLSIQTIVERIGYQ 287 Query: 214 STSYFINTFRQYYGVTPHQFAQ 235 ++F F++ G+TP Q+ Q Sbjct: 288 DNAFFYKRFKEEMGMTPKQYRQ 309 >UniRef50_B2HXY7 AraC-type DNA-binding domain-containing protein n=10 Tax=Acinetobacter RepID=B2HXY7_ACIBC Length = 344 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 67/130 (51%), Gaps = 8/130 (6%) Query: 106 PILSNMLYLSCLSMFSHKKELIPLLFNS--ISTVSGKVERLISFDIAKRWYLRDIAERMY 163 P+L+ +L C KK++ L S + +S +++L+ + ++ +A+ M Sbjct: 208 PMLAPLLKAQC------KKDIDKLKLRSGWKAEISQVIKKLLINSQGEILKVKQVAQMMN 261 Query: 164 TSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFR 223 SE +++ L ENT FS ++ +R A+ LL+ + + +A GY+ T +F F+ Sbjct: 262 MSERSLQRYLAIENTSFSALVDLTRKQYAQDLLQNSSMSIEAVALSLGYADTPHFTRAFK 321 Query: 224 QYYGVTPHQF 233 ++ GVTP + Sbjct: 322 RWMGVTPKYY 331 >UniRef50_B8FMW7 Transcriptional regulator, AraC family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FMW7_DESAA Length = 342 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/141 (25%), Positives = 68/141 (48%), Gaps = 8/141 (5%) Query: 98 FNESGVNSPI-LSNMLYLSCLSMFSHKKEL--IPLLFNSISTVSGKVERLISFDIAKRWY 154 ++++ +N+P+ L+N L+ +H+KE + L T S ++ + I F Sbjct: 205 WDKTNLNTPLPLAN-----PLAKKAHEKECRELSLRIRKQETASSRIVQEIEFRRQGVPG 259 Query: 155 LRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSS 214 D+A M S ++++L++E T F I+ + A LL+ +P+ IA + GY Sbjct: 260 FDDLARHMNMSPRTLRRRLKEEGTSFKNIVSDVQKEKAIHLLQTTNLPIQQIALELGYED 319 Query: 215 TSYFINTFRQYYGVTPHQFAQ 235 F F+++ G TP + Q Sbjct: 320 LPNFYRAFKRWTGKTPGDYRQ 340 >UniRef50_B7RZI3 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RZI3_9GAMM Length = 340 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 3/110 (2%) Query: 129 LLFNSISTVSGKVERLISFDIAKRWYLRDI---AERMYTSESLIKKKLQDENTCFSKILL 185 LL + S V+++ +A+ Y DI AE++ + ++++L E++ + +IL+ Sbjct: 228 LLLARMKAGSNFVDKVRQIILARPGYFPDIDYVAEKLNMTSRTLRRRLTREDSSYQEILV 287 Query: 186 ASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 R +AR L +PL I+ GYS+ F N F++++G +P ++ Q Sbjct: 288 EVRYELAREYLATSTLPLEEISVLLGYSAPGNFSNAFKRWHGSSPRKYRQ 337 >UniRef50_UPI0001788EC5 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788EC5 Length = 524 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 5/114 (4%) Query: 125 ELIPLLFNSISTVSGKVERLISFDIAKRWY----LRDIAERMYTSESLIKKKLQDENT-C 179 E+ +L N ST +G++ I +I R + LRD+A R S + + ++E Sbjct: 406 EISEMLKNRKSTKNGRLVEEIIENIQARMHENITLRDMANRFSFSPNYLGVLFKEETGHN 465 Query: 180 FSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 FS ++ RM AR LL+ ++ ++ IA + GY YF F++ YG+TP ++ Sbjct: 466 FSDYVIKLRMERARDLLKTTKLKIYEIASQTGYQYLPYFSRQFKEMYGMTPLEY 519 >UniRef50_Q1GDX2 Transcriptional regulator, AraC family n=2 Tax=Ruegeria RepID=Q1GDX2_SILST Length = 386 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 1/94 (1%) Query: 141 VERLISFDIAKR-WYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELR 199 VERLI +++ L +AE + S+ + +KL E T F IL R S+A R L+ Sbjct: 281 VERLIMDGMSEGDASLAQVAESLDMSQRTLSRKLASEGTSFFAILEGVRKSLALRYLQQN 340 Query: 200 QIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 + L I+ GYSS S F + FR++Y +P + Sbjct: 341 EKSLSEISFALGYSSLSSFNDAFRRWYDQSPGSY 374 >UniRef50_Q7CUB1 Transcriptional regulator, AraC family n=1 Tax=Agrobacterium tumefaciens str. C58 RepID=Q7CUB1_AGRT5 Length = 246 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 1/109 (0%) Query: 123 KKELIPLLFNSI-STVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFS 181 ++ +PL+ + +V+ V LI + W +A + SE+ ++++L+DEN Sbjct: 126 EQGALPLMPKYVDGSVTEAVRLLIRHRLDHAWSTAAVAASLSMSEATLRRRLRDENQSLR 185 Query: 182 KILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTP 230 +LLA RM A +L R + GY+S S+F F+ +G P Sbjct: 186 ALLLAERMQAAYLILSDRDADVAEAIAATGYASRSHFSRRFQDAFGQAP 234 >UniRef50_C0EDW5 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EDW5_9CLOT Length = 326 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/177 (24%), Positives = 82/177 (46%), Gaps = 18/177 (10%) Query: 75 HSKDRLLINQSPPMPLVTAIFDSFNESGVNSPI-----LSNMLYLSCLSM---FSHKKEL 126 + D +L +P +TA+ D E N P+ L + L L+ + +SH++ L Sbjct: 157 QASDSILFRHNPESG-ITAVLDMMIEEFFNKPMGYEKALESFLALTFTRLTRSYSHQENL 215 Query: 127 IPLLFNSISTVSGKVERLISF---DIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKI 183 L K+ +I++ + A+ + + Y+ + L + Q F++I Sbjct: 216 EEL------KKQQKIMPIIAYIRENFAEATLVSTAQQFNYSEKYLSRLIKQRTGKSFNEI 269 Query: 184 LLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGT 240 + ++ AR LL +P+ IA++ GY++ SYF F++ Y TP+QF + + T Sbjct: 270 SIGYKLEYARELLLNSVLPISEIAQRVGYANVSYFFKAFKKRYMQTPYQFRKSNSAT 326 >UniRef50_A1WHE5 Transcriptional regulator, AraC family n=2 Tax=Comamonadaceae RepID=A1WHE5_VEREI Length = 337 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 43/79 (54%) Query: 155 LRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSS 214 L +A + S ++++LQ E F K+ A+R + AR+LLE + L IA+ GY+ Sbjct: 250 LGAVARALGQSPRTLQRRLQAEGAVFEKLREAARQAWARQLLEQPDLSLGHIAQLLGYAD 309 Query: 215 TSYFINTFRQYYGVTPHQF 233 S ++++GV+P Q Sbjct: 310 QSVLTRACQRWFGVSPRQL 328 >UniRef50_C6AKL4 Histidine kinase n=2 Tax=Aggregatibacter RepID=C6AKL4_AGGAN Length = 293 Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Query: 153 WYLRDIAERMYTSES-LIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCG 211 W + +AE S + I+ Q K L RM+MA LL+ Q P+ IA + G Sbjct: 209 WSMEVLAESCAMSRANFIRAFKQKTGILPGKFLTIMRMNMAGMLLKNTQKPISVIASEVG 268 Query: 212 YSSTSYFINTFRQYYGVTPHQF 233 Y S ++F F+ YYG++P ++ Sbjct: 269 YQSDTHFTKVFKSYYGISPGKY 290 >UniRef50_C4G4K9 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G4K9_ABIDE Length = 523 Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 13/151 (8%) Query: 96 DSFNESGVNSPILSNMLYLSCLSMFSH-KKELIPLLFNS------ISTVSGKVERLISFD 148 DS + + +++ LS + CL S K+ FNS S ++ KV + I + Sbjct: 373 DSIDFADISAASLSAIGEACCLEEMSECLKDAAKFYFNSKDSKSQYSQIADKVTKYIIDN 432 Query: 149 IA-KRWYLRDIAERMYTSE---SLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLH 204 + +R + IA ++Y S SL+ KK D ++ + R+ A+ LL + PL Sbjct: 433 YSDERLSISQIAGKIYLSPNYLSLLFKK--DTGKTINQFITEVRIEKAKALLRKDRTPLT 490 Query: 205 TIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 +IAEK GY +YF F++ G+TP F + Sbjct: 491 SIAEKIGYHDANYFSKAFKKETGMTPKAFRE 521 >UniRef50_B5XTB5 Transcriptional regulator, AraC family n=5 Tax=Klebsiella RepID=B5XTB5_KLEP3 Length = 301 Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 2/83 (2%) Query: 153 WYLRDIAERMYTSESLIKKKLQDENTCFSKILLAS-RMSMARRLLEL-RQIPLHTIAEKC 210 W L +A R + S + + + L+ RM++A RLL L RQ L IAE+C Sbjct: 216 WTLESMAARAFLSRATFARHFARVYHLTPQAWLSQLRMALAARLLRLERQTNLEVIAERC 275 Query: 211 GYSSTSYFINTFRQYYGVTPHQF 233 G+ S + F F+ YGVTP ++ Sbjct: 276 GFQSLASFSKRFKMRYGVTPGEW 298 >UniRef50_D0GMR1 Transcriptional regulator, AraC family n=1 Tax=Leptotrichia goodfellowii F0264 RepID=D0GMR1_9FUSO Length = 719 Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 58/103 (56%), Gaps = 5/103 (4%) Query: 134 ISTVSGKVERLISFDIAKRWYLRDIAERM---YTSESLIKKKLQDENTCFSKILLASRMS 190 I T+ +E+ ++ + K L +++E + + S++ KK+ +N F L R+ Sbjct: 611 IRTIKNSIEKYMTENYMKDISLENLSEYLGYSFKYTSILFKKIMGDN--FKNYLSLYRIK 668 Query: 191 MARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 A+ L+E ++ + +AE GY+S++ FI FR+Y GV+P ++ Sbjct: 669 KAKELMEEKEYKIKELAELVGYNSSNTFIRMFRKYEGVSPGKY 711 >UniRef50_A5ZT85 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZT85_9FIRM Length = 405 Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 1/83 (1%) Query: 155 LRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYS 213 LR +A + + S I + ++ E F L R+S A RL+E R++ ++ IAEK GYS Sbjct: 314 LRQVAHAIGCNSSYISRIMKQELGISFKDFLTRLRISQAVRLMEDRELSINQIAEKVGYS 373 Query: 214 STSYFINTFRQYYGVTPHQFAQH 236 + YF F+ G++P +F ++ Sbjct: 374 NQHYFSAAFKNCQGMSPSEFRKN 396 >UniRef50_UPI0001C36780 two component transcriptional regulator, AraC family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36780 Length = 491 Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 32/51 (62%) Query: 180 FSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTP 230 FSK LL RM A LLE + ++ +A GY+S SYFI F++Y+G TP Sbjct: 431 FSKYLLGLRMKKAEELLENGDMNINEVALMVGYTSPSYFIQNFKKYFGRTP 481 >UniRef50_UPI000178A140 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178A140 Length = 229 Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 48/80 (60%), Gaps = 1/80 (1%) Query: 155 LRDIAERMYTSESLIKKKLQD-ENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYS 213 L+D++ + + + S + +K ++ EN F++ LL RM A+ LLE + ++ IA + GY+ Sbjct: 144 LKDLSSKFHFNRSYLGQKFKNHENMSFNEYLLIQRMERAKILLEQTDLKVYEIAYEVGYT 203 Query: 214 STSYFINTFRQYYGVTPHQF 233 +F F+ Y GV+ +++ Sbjct: 204 EIDWFYKRFKSYTGVSANEY 223 >UniRef50_C6J1Q8 Two component transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J1Q8_9BACL Length = 542 Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 49/81 (60%), Gaps = 1/81 (1%) Query: 157 DIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSST 215 D+AE +Y + + + + E ++ R+S+A++LLE ++ ++ +A + GY++ Sbjct: 449 DLAEVVYLNPDYLARLFKKETGISLGSYVIQVRISVAKQLLETTKLSVYAVANQVGYANY 508 Query: 216 SYFINTFRQYYGVTPHQFAQH 236 SYF F+Q GVTP+++ ++ Sbjct: 509 SYFSKLFKQEVGVTPNEYKKN 529 >UniRef50_C6CXP8 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CXP8_PAESJ Length = 768 Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 1/87 (1%) Query: 155 LRDIAERM-YTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYS 213 L D A ++ Y + L ++ NT FS+ L A R SMA++ L P+ IA + Y+ Sbjct: 682 LEDCAAKLNYNANYLSSVFRKETNTSFSEYLAAYRFSMAKKWLRETDTPVKDIASRLCYN 741 Query: 214 STSYFINTFRQYYGVTPHQFAQHSPGT 240 + FI +FR+ G+TP Q+ + T Sbjct: 742 NPQNFIRSFRKLEGITPGQYREKHVAT 768 >UniRef50_C6CEQ2 Transcriptional regulator, AraC family n=2 Tax=Dickeya RepID=C6CEQ2_DICZE Length = 282 Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 46/93 (49%) Query: 138 SGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLE 197 S +V RL++ W +A+ + T+ S + ++L E + + +R+ A LL+ Sbjct: 185 SERVRRLVAQRPYDHWSASRVAQALSTTASTLNRRLAQEGCTITTCVRDTRLETAMVLLQ 244 Query: 198 LRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTP 230 + P+ IA GY S S F FR+ +GV P Sbjct: 245 SSERPVAAIALDVGYESHSKFTAAFRRRFGVVP 277 >UniRef50_A4Y0S8 Transcriptional regulator, AraC family n=1 Tax=Pseudomonas mendocina ymp RepID=A4Y0S8_PSEMY Length = 342 Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 42/76 (55%) Query: 158 IAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSY 217 +A ++ SE ++++L +E + ++L +R +A R L ++P IA GYS S Sbjct: 259 LARALHLSERTLQRRLAEEGCNYQQLLADTRRQLAERYLREGRLPAAEIALLLGYSEPSV 318 Query: 218 FINTFRQYYGVTPHQF 233 F FRQ+ G+ P ++ Sbjct: 319 FFRAFRQWTGLPPGEY 334 >UniRef50_B4X5H8 Transcriptional regulator, AraC family protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4X5H8_9GAMM Length = 358 Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 43/77 (55%) Query: 157 DIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTS 216 DIA + S +++KL ++ T F IL +R +A +E R + L IA G+SS + Sbjct: 274 DIASTLGMSLRNLQRKLSEQGTSFKDILEQTRRKLALEYIEQRHLTLGEIAYLVGFSSAA 333 Query: 217 YFINTFRQYYGVTPHQF 233 F F+++ GV+P +F Sbjct: 334 NFNRAFKRWTGVSPGEF 350 >UniRef50_A5W7M3 Transcriptional regulator, AraC family n=3 Tax=Pseudomonas RepID=A5W7M3_PSEP1 Length = 309 Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 3/89 (3%) Query: 155 LRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYS 213 L+ +A Y S + + L+ E FS+++L RM AR L P+ +A CG++ Sbjct: 215 LQKVAAATYLSPTYLTHWLRKEIGKTFSELVLERRMHAARNYLLNGSRPVGEVARLCGFA 274 Query: 214 STSYFINTFRQYYGVTPHQF--AQHSPGT 240 +YF FRQ +G+ P QF Q P T Sbjct: 275 DEAYFSRRFRQIHGLPPGQFRRQQRDPDT 303 >UniRef50_A5VMB5 Transcriptional regulator, AraC family n=7 Tax=Lactobacillus reuteri RepID=A5VMB5_LACRD Length = 359 Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 24/98 (24%), Positives = 55/98 (56%), Gaps = 1/98 (1%) Query: 143 RLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQI 201 + I+ ++ K L ++++R+Y S S + + ++ N F + ++++A+ L Sbjct: 169 KYINSNLEKSLTLENVSQRIYLSPSYLSRIFKNYFNDNFINYINLQKIALAQEKLIFSNT 228 Query: 202 PLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPG 239 P++ +A + G+S TSYF F+Q G+TP ++ +++ Sbjct: 229 PINKLAHQVGFSQTSYFTKIFKQKVGMTPSKYRKYNSA 266 >UniRef50_A3DHR0 Transcriptional regulator, AraC family n=3 Tax=Clostridium thermocellum RepID=A3DHR0_CLOTH Length = 310 Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 1/96 (1%) Query: 148 DIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTI 206 +I K+ L + + + + I K+ Q E NT K RM +A LL +IP+ + Sbjct: 212 NIDKKITLEHLEKTFACNRNQINKEFQKELNTTVMKYFTQMRMQLASILLRDTEIPILEV 271 Query: 207 AEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGTFS 242 A + GYS YF TF+ Y G++P ++ T S Sbjct: 272 ALRVGYSDAGYFSKTFKLYSGISPSEYRNSFYSTIS 307 >UniRef50_C0C262 Putative uncharacterized protein n=2 Tax=Clostridium hylemonae DSM 15053 RepID=C0C262_9CLOT Length = 526 Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 32/56 (57%) Query: 180 FSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 FS L R+ +AR+LLE IP+ I E CGY++ YF F++ G TP + + Sbjct: 466 FSAYLTGERIKIARKLLEDSSIPIQEIGELCGYNNPKYFSVVFKKVTGETPRGYRE 521 >UniRef50_B5GZF8 Transcriptional regulator n=1 Tax=Streptomyces clavuligerus ATCC 27064 RepID=B5GZF8_STRCL Length = 343 Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 3/71 (4%) Query: 173 LQDENTCFSKILLASRMSMARRLLEL---RQIPLHTIAEKCGYSSTSYFINTFRQYYGVT 229 L + ++ R+S+ARR+L R +P+ ++A +CG+ S S+F FR YGVT Sbjct: 248 LGRAGIGLEQWIITERLSLARRMLVSDVHRHLPIASVAARCGFLSPSHFSRRFRAAYGVT 307 Query: 230 PHQFAQHSPGT 240 P ++ GT Sbjct: 308 PREWRNGRDGT 318 >UniRef50_D0KWJ3 Transcriptional regulator, AraC family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KWJ3_HALNC Length = 326 Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 7/92 (7%) Query: 144 LISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMAR-RLLELRQ-- 200 L+ +++ RW LR R SE ++ DE + F +L R++ A RL++ RQ Sbjct: 225 LLDPELSVRWVLR----RHRISERYLRALFADEASSFGDFVLERRLARAWLRLIDPRQHS 280 Query: 201 IPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQ 232 P+ IA + G+ S+F FR+ +GV+P + Sbjct: 281 TPIGVIAAESGFGDPSWFNRAFRRRFGVSPSE 312 >UniRef50_B2U5Z6 Transcriptional regulator, AraC family protein n=9 Tax=Enterobacteriaceae RepID=B2U5Z6_ECOLX Length = 294 Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 50/100 (50%) Query: 133 SISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMA 192 S +VS K+ R++ + ++ W ++A + SES +K+++ E S + +++ A Sbjct: 188 SFVSVSEKIARIVMANYSRNWSNSELASAVLMSESSLKRRMYKEVGSISTFVHKIKLTEA 247 Query: 193 RRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQ 232 R L P+ I+ + GYSS SYF F +Y P Sbjct: 248 IRKLRRTNTPISVISSELGYSSPSYFSKVFFKYLKTYPQN 287 >UniRef50_D1AA08 Transcriptional regulator, AraC family n=18 Tax=Actinobacteria (class) RepID=D1AA08_THECD Length = 332 Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/135 (22%), Positives = 63/135 (46%), Gaps = 11/135 (8%) Query: 115 SCLSMFSHKKELIPLLFNSIS-TVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKL 173 S + F+ +++ P + +++ V G+ R++ D A+ W + +A R S + + ++ Sbjct: 183 SLRTWFTRRRDAAPAWYRALADPVVGRALRMMHQDPARPWTVAALAGRTGVSRAALARRF 242 Query: 174 QD-ENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQ 232 + L R+++A LL + + ++A + GY S F F++ GV+P Q Sbjct: 243 TELVGEPPMAYLTGWRLALAADLLREPEATVASVARRVGYGSPFAFSAAFKRVRGVSPRQ 302 Query: 233 F---------AQHSP 238 + +HSP Sbjct: 303 YRAMVTGSRDGEHSP 317 >UniRef50_UPI000178A084 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178A084 Length = 257 Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 1/80 (1%) Query: 155 LRDIAERMYTSESLIKKKLQ-DENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYS 213 L++IAERM+ + S + +K + E F++ LL RM A+ LL + ++ IA+ GY+ Sbjct: 162 LKEIAERMHFNYSYLVQKFKFHEKMTFNEYLLQQRMEKAKFLLVHTNMKIYEIADMVGYN 221 Query: 214 STSYFINTFRQYYGVTPHQF 233 +F F+ Y GV+ + F Sbjct: 222 DMDWFYKKFKSYAGVSANMF 241 >UniRef50_UPI0001C37D6C ggdef domain n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37D6C Length = 748 Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 7/87 (8%) Query: 151 KRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLAS----RMSMARRLLELRQIPLHTI 206 ++W + IA+ +Y S+S ++K + T F+K ++ R+ A+ LL + + I Sbjct: 654 EQWNISTIADSLYLSKSYLQKIYK---TYFNKSIIEELIEFRLEKAKELLTETNMTITDI 710 Query: 207 AEKCGYSSTSYFINTFRQYYGVTPHQF 233 + +CGYSS +YF+ FR GV+P ++ Sbjct: 711 SHECGYSSYNYFVRQFRHSEGVSPTEY 737 >UniRef50_C4G7K2 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G7K2_ABIDE Length = 357 Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 41/177 (23%), Positives = 77/177 (43%), Gaps = 22/177 (12%) Query: 79 RLLINQSPPMPLVTA-IFDSFNESGVNSPILSNML---YLSCLSMFSHKKELIPLLFNSI 134 RL ++ P PL+ I D + P ++++ YL +S K L Sbjct: 168 RLFVDGDSPAPLIADWIGDYLGREALIPPEAADIIVKQYLEKMSQMPDGK--ADFLLREC 225 Query: 135 STVSGKVERL----ISF-DIAKRWYLRDIAERMYTSESLIKKK-----------LQDENT 178 + + + ER+ +SF + K + LR+ ++ E+L + +D Sbjct: 226 TKLMERQERMEENAVSFTESVKEYVLRNYSDENLGVETLAAEMGFSAGYIGRIFARDVGV 285 Query: 179 CFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 + ++ +RM A+RLL + + IA +CG+S +YF FR+ G +P +F + Sbjct: 286 SLQEFIIQTRMHEAKRLLRETRDTVAVIANRCGFSDANYFSKVFRKRCGSSPKEFRE 342 >UniRef50_A5VW33 Transcriptional regulator, AraC family n=36 Tax=Brucella RepID=A5VW33_BRUO2 Length = 259 Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 28/124 (22%), Positives = 63/124 (50%), Gaps = 1/124 (0%) Query: 110 NMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLI 169 ++++ +CL+M + K++ P+L ++ ++ I ++ + + IA+++ S S + Sbjct: 121 DIMWQACLAMMAEKEKQPPVLSSANRQDCERIREFIMANLDRDLTIDLIAQKVAISASTV 180 Query: 170 KKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGV 228 +++ + T + R+ A L IP+ A GY++TS F + FR+ YG Sbjct: 181 QRRFKKHYGTTLYNFIKQQRLEAACVALSRDSIPISQAAHLAGYNNTSTFTSAFRKLYGF 240 Query: 229 TPHQ 232 +P + Sbjct: 241 SPKK 244 >UniRef50_A5F2L6 Transcriptional regulator, AraC/XylS family n=33 Tax=Vibrionaceae RepID=A5F2L6_VIBC3 Length = 262 Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 4/109 (3%) Query: 129 LLFNSI-STVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLAS 187 LLF S +++ ++ R +S + + ++ S + + + L E T F ++L Sbjct: 148 LLFPSDNASMRERLARYLSVNPGDEHNIETVSAHFAMSRATLARHLAAEGTGFREVLSEV 207 Query: 188 RMSMARRLL-ELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 RM+ A LL ELR PL +A CGY S + F F+Q Y +TP+Q+ Q Sbjct: 208 RMNYALALLQELR--PLMEVAVACGYQSLTRFSARFKQQYRLTPYQYLQ 254 >UniRef50_A9AT03 Transcriptional regulator, AraC family n=13 Tax=Burkholderia cepacia complex RepID=A9AT03_BURM1 Length = 425 Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 34/140 (24%), Positives = 70/140 (50%), Gaps = 5/140 (3%) Query: 94 IFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSIST-VSGKVERLISFDIAKR 152 +F + N G +P L+N + + L + L SI T + + + L++ D+++ Sbjct: 284 VFTAVN--GTETPRLANEVSFNAL--HGQCEALERQWAASIGTRFADRAKALMTRDLSRF 339 Query: 153 WYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGY 212 + +A+ ++ +E ++++L+ + F +L R A RLL+ + + IAE GY Sbjct: 340 KSMTSLADALHMTERTLRRRLEKDGISFQALLDDVRRDEAARLLDDPALTVAAIAEHLGY 399 Query: 213 SSTSYFINTFRQYYGVTPHQ 232 S F + +R++ G TP + Sbjct: 400 SEPRAFRHAYRRWTGRTPRE 419 >UniRef50_A6TTD1 Response regulator receiver protein n=3 Tax=Firmicutes RepID=A6TTD1_ALKMQ Length = 263 Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 1/80 (1%) Query: 155 LRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYS 213 LRD+A ++ + S + +++ N FS+ + R+ A+ LL + + IA + GY Sbjct: 174 LRDVANHVHLNSSYLSVLFKEQTNLTFSEYMTRRRLENAKNLLMSTDLTIDEIAHEVGYQ 233 Query: 214 STSYFINTFRQYYGVTPHQF 233 + YFI F+++ GVTP +F Sbjct: 234 TAKYFIKLFKEFEGVTPSRF 253 >UniRef50_D0KWJ8 Transcriptional regulator, AraC family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KWJ8_HALNC Length = 328 Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 4/89 (4%) Query: 144 LISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPL 203 L++ +++ W LR R SE ++ DE+T F++ +L R+ A L+ + Sbjct: 230 LLNPELSVGWVLR----RHRISERYLRSLFADEDTSFTRFVLERRLMRAHAALDQSGRSI 285 Query: 204 HTIAEKCGYSSTSYFINTFRQYYGVTPHQ 232 IA CG+S S+F FRQ + +TP Q Sbjct: 286 SEIAYDCGFSDLSWFNRAFRQRFDMTPSQ 314 >UniRef50_B2HYH2 AraC-type DNA-binding domain-containing protein n=16 Tax=Acinetobacter RepID=B2HYH2_ACIBC Length = 336 Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 27/106 (25%), Positives = 55/106 (51%), Gaps = 1/106 (0%) Query: 131 FNSISTVSGKVERLISFDIAKRW-YLRDIAERMYTSESLIKKKLQDENTCFSKILLASRM 189 F + ++++ ++ ++ I + L D+A +Y S ++++L E + + A R Sbjct: 226 FKNTNSLTSRIREVLKSQIGEEMPTLNDVASMLYLSPQTLRRRLAAEGKSYQGVKDALRR 285 Query: 190 SMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 A LL ++ L +A++ G+S TS F F+++ GVTP + Q Sbjct: 286 DAAIHLLLNPELTLEDVAQQVGFSETSTFHRAFKKWTGVTPGLYRQ 331 >UniRef50_A6B9M2 Transcriptional regulator, AraC/XylS family (Fragment) n=1 Tax=Vibrio parahaemolyticus AQ3810 RepID=A6B9M2_VIBPA Length = 174 Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 1/94 (1%) Query: 141 VERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELR 199 ++R I ++ + + +A R++ ES +D+ + +L R+ MAR L+E Sbjct: 76 IDRYIEQHLSHKISVAQLAGRVFLGESQFHSLFKDQMGITPHQYVLGKRIDMARELIEQG 135 Query: 200 QIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 + L IAE G+SS S F +TF + G++P Q+ Sbjct: 136 HLSLGQIAEFTGFSSQSTFTHTFTRLQGLSPSQY 169 >UniRef50_C6D427 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D427_PAESJ Length = 530 Score = 49.7 bits (117), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 1/79 (1%) Query: 158 IAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTS 216 +AE +Y + + + E ++++RM A++LL + + +A+K GY++ S Sbjct: 450 LAEIVYLHPDYLARLFKKETGVSLGTYVISARMEAAKQLLRTTNLSVFAVAKKVGYANYS 509 Query: 217 YFINTFRQYYGVTPHQFAQ 235 YF F+Q GVTP+++ Q Sbjct: 510 YFAKVFKQEAGVTPNEYKQ 528 >UniRef50_A6F6Z7 Probable transcriptional regulator n=1 Tax=Moritella sp. PE36 RepID=A6F6Z7_9GAMM Length = 354 Score = 49.7 bits (117), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 45/76 (59%) Query: 158 IAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSY 217 +A ++ SE +++KLQ E T + K+L +R+S+A++ L + + IA G+S T Sbjct: 265 VAAQLNMSERTLQRKLQQEQTSYQKLLDEARLSLAQQYLTKSKAGIDEIAIMLGFSETRS 324 Query: 218 FINTFRQYYGVTPHQF 233 F +F+ + G TP+ + Sbjct: 325 FFRSFKLWTGQTPNVY 340 >UniRef50_B3EYL7 Two-component response regulator n=5 Tax=Firmicutes RepID=B3EYL7_BACST Length = 404 Score = 49.7 bits (117), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 1/80 (1%) Query: 155 LRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYS 213 L +AE + S + + ++ E F +L RM A LL ++P+H IAE+ GY Sbjct: 314 LESVAEFLNVSPVYLSRMIKQELGISFIHLLTKIRMEKAAELLLSTELPIHEIAERVGYD 373 Query: 214 STSYFINTFRQYYGVTPHQF 233 + YF F++ GV+P+Q+ Sbjct: 374 TQHYFSTAFKKAMGVSPNQY 393 >UniRef50_UPI0001BC2F1F 2-isopropylmalate synthase n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC2F1F Length = 288 Score = 49.7 bits (117), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 1/80 (1%) Query: 155 LRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYS 213 L D+A+ + SE I + + N FSK + R+ A+ LL+ I + +A G+ Sbjct: 200 LSDLADEFHMSEKYISRYFKKHFNITFSKYVNHMRLLYAKNLLDTTNISITDVALSSGFP 259 Query: 214 STSYFINTFRQYYGVTPHQF 233 + SYFI +F++ YG TP + Sbjct: 260 NVSYFIRSFKESYGKTPFSY 279 >UniRef50_C7PQL4 Transcriptional regulator, AraC family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PQL4_CHIPD Length = 332 Score = 49.7 bits (117), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 31/54 (57%) Query: 182 KILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 K + +RM A RLL IP+ +A K GY+ YF F++ +GVTP ++ Q Sbjct: 270 KFIEDTRMQEAARLLRTTDIPIADVAYKVGYADQGYFTKVFKRVFGVTPRKYRQ 323 >UniRef50_B0KIB9 Transcriptional regulator, AraC family n=17 Tax=Proteobacteria RepID=B0KIB9_PSEPG Length = 359 Score = 49.7 bits (117), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 45/85 (52%) Query: 155 LRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSS 214 L +AE++ ++++LQ++ FS ++ R +A L+ +P+ +A GYS Sbjct: 270 LEQVAEQLRLPSWTVQRRLQEQGLSFSTLVDTVRQELATYYLQQSALPISELALLLGYSE 329 Query: 215 TSYFINTFRQYYGVTPHQFAQHSPG 239 S F FR+++ V+P Q+ Q G Sbjct: 330 ISAFSRAFRRWFDVSPKQWRQAHKG 354 >UniRef50_B4X0B5 Transcriptional regulator, AraC family protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4X0B5_9GAMM Length = 321 Score = 49.7 bits (117), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 1/82 (1%) Query: 152 RWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCG 211 RW +AE++ S + +KL +E T F + + MA + L+ + L IA+K G Sbjct: 237 RWGKEKVAEQLAMSGRHLIRKLSEEGTSFKLLRDSLLQGMAEQSLK-EGLKLFDIADKLG 295 Query: 212 YSSTSYFINTFRQYYGVTPHQF 233 +S S F F+++ G+TP QF Sbjct: 296 FSDESAFAKAFKRWTGMTPAQF 317 >UniRef50_A2TY79 Transcription regulator, AraC family n=1 Tax=Polaribacter sp. MED152 RepID=A2TY79_9FLAO Length = 343 Score = 49.7 bits (117), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 1/80 (1%) Query: 155 LRDIAERMYTSESLIKKKLQDENTC-FSKILLASRMSMARRLLELRQIPLHTIAEKCGYS 213 + +IA R + SES ++K Q C + R++ AR LLE ++ + IA + G Sbjct: 253 IEEIARRNFVSESKLQKLFQTYYKCSVNDFTRNKRLNQARILLETTRMSMAEIAHELGIR 312 Query: 214 STSYFINTFRQYYGVTPHQF 233 S SY TF++ YGVTP + Sbjct: 313 SNSYLSKTFKERYGVTPSNY 332 >UniRef50_D1N500 Transcriptional regulator, AraC family n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N500_9BACT Length = 285 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 1/96 (1%) Query: 139 GKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD-ENTCFSKILLASRMSMARRLLE 197 ++ R I+ +R L D+A ++ S S + + + FS++L RM+ ARRLL Sbjct: 181 ARIRRYIANHAHERITLDDVARELFISNSRTRHLITELTGQSFSELLDEVRMNRARRLLL 240 Query: 198 LRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 + L IA+ GY++ YF F +Y+G P ++ Sbjct: 241 SGERTLAEIADATGYANVHYFSRRFNEYFGEPPGRY 276 >UniRef50_A6G2V5 Transcriptional Regulator, AraC family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G2V5_9DELT Length = 315 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 41/79 (51%) Query: 155 LRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSS 214 L +A R+ E +++KL F +L R++ A LLE R++ + IA + GYS Sbjct: 232 LESVARRLGVGERTLQRKLARAGLGFRTLLAEQRLAWAVSLLESRELGMSEIAFRMGYSE 291 Query: 215 TSYFINTFRQYYGVTPHQF 233 S F F+++ G P ++ Sbjct: 292 QSAFTRAFKRWTGSCPTRY 310 >UniRef50_C2BXH0 Response regulator n=1 Tax=Listeria grayi DSM 20601 RepID=C2BXH0_LISGR Length = 495 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 1/89 (1%) Query: 155 LRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYS 213 L+D+A R++ + + + + E N FS+ L R+ A+ L ++ IA+K GY+ Sbjct: 404 LKDVANRLHMNTMYVGQLFKKETNKSFSQYLHQYRIKKAQNFLVDTSDTINEIADKTGYT 463 Query: 214 STSYFINTFRQYYGVTPHQFAQHSPGTFS 242 S YF +F++ G++P +F + F Sbjct: 464 SAGYFYKSFKKICGISPKEFREQYQSNFD 492 >UniRef50_Q2BIB0 Putative uncharacterized protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BIB0_9GAMM Length = 319 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 3/96 (3%) Query: 140 KVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFS--KILLASRMSMARRLLE 197 KV+ LI + W + +AE ++ SE +++ L E T FS + L +R+ +AR+LLE Sbjct: 220 KVQDLIMQAPGQDWKIAQLAEEVFLSERHLRR-LFTEATGFSVQQYLQQARVELARQLLE 278 Query: 198 LRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 L IAE+CG+++ + Q+ TP ++ Sbjct: 279 QTSFSLDAIAERCGFAAERSLRRAWEQWREGTPSRY 314 >UniRef50_A7K218 Transcriptional regulator AraC/XylS family n=5 Tax=Vibrio RepID=A7K218_VIBSE Length = 259 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 58/112 (51%), Gaps = 1/112 (0%) Query: 123 KKELIPLLFNSIST-VSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFS 181 ++ L+ LF S +T S K+ R +S L +AER S + + +KL+ E T + Sbjct: 142 ERGLLHRLFTSSNTSFSQKLSRYLSRSPGDDHPLEFVAERFAMSRATLIRKLKQEGTQYR 201 Query: 182 KILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 ++L R++ A L++ + +A+ CGY S F F+ +G+TP ++ Sbjct: 202 EVLAEVRLNHALYLMQNGSYNVALLAQLCGYQSEGRFSQRFKGKFGLTPSEY 253 >UniRef50_Q7NVM9 Probable transcriptional regulator, AraC family n=1 Tax=Chromobacterium violaceum RepID=Q7NVM9_CHRVO Length = 272 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 5/98 (5%) Query: 138 SGKVERLISFDIAKRWYL----RDIAERMYTSESLIKKKL-QDENTCFSKILLASRMSMA 192 G + R I I++ Y D+A R S + + + Q F + L +R+ +A Sbjct: 167 GGNLFRAICLYISEHLYAPLTREDVALRFSISATHLSRLFRQHLGLGFCEFLSHARLDLA 226 Query: 193 RRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTP 230 + LL Q+PL +A +CGY+ +YF F+Q + +TP Sbjct: 227 KALLRQGQLPLSRVAARCGYADVNYFHRVFKQRFAMTP 264 >UniRef50_D1UPU4 Transcriptional regulator, AraC family n=1 Tax=Burkholderia sp. CCGE1001 RepID=D1UPU4_9BURK Length = 319 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 1/96 (1%) Query: 139 GKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFS-KILLASRMSMARRLLE 197 G+ RL+ ++A+RW + D+A + S + ++ + + + L R+++A L+ Sbjct: 204 GRALRLMHGEVARRWKVEDLASAVAMSRTGFSERFRVQVGLPPLEYLTRWRLTLACSALK 263 Query: 198 LRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 PL IA + GY S + F FR+ YGV+P ++ Sbjct: 264 AGDEPLAAIARQIGYESATAFSLAFRRMYGVSPGRY 299 >UniRef50_C6IWZ0 Two component transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IWZ0_9BACL Length = 253 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 32/60 (53%) Query: 174 QDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 Q FS +L ++M MA LL + I+EK GYS+ F TF+ YYG TP +F Sbjct: 187 QKTGQNFSDYVLQTKMEMAAALLRDVSYKTYEISEKVGYSNAKNFTRTFKSYYGQTPSEF 246 >UniRef50_C0VLH8 AraC family transcriptional regulator n=1 Tax=Acinetobacter sp. ATCC 27244 RepID=C0VLH8_9GAMM Length = 334 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 43/78 (55%) Query: 155 LRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSS 214 L DI E+M SE +++KL++E T F +++ R A +LL + L IA GY++ Sbjct: 256 LTDILEKMKISERTLQRKLENEGTNFRELVDKVRCEKAIQLLNNSNLSLENIALHLGYTN 315 Query: 215 TSYFINTFRQYYGVTPHQ 232 F F+++ G TP + Sbjct: 316 AKNFSRAFKRWTGSTPRK 333 >UniRef50_C7IE87 Transcriptional regulator, AraC family n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IE87_9CLOT Length = 329 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 12/97 (12%) Query: 146 SFDIAKRWYLRDIAERMYTS---------ESLIKKKLQDENTCFSKILLASRMSMARRLL 196 + D +++Y R+I+ S L ++ + D FS + R+ AR LL Sbjct: 231 ALDYIEKYYTRNISLNNMASLCNISTSYFSKLFRRTIGDN---FSNHINRIRIKKARELL 287 Query: 197 ELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 E IP+ IA G+ + YFI F+++ GVTP +F Sbjct: 288 ETTDIPITNIALDLGFEDSGYFIKVFKKFEGVTPSKF 324 >UniRef50_C0CWR9 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CWR9_9CLOT Length = 256 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%) Query: 155 LRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYS 213 +RD+A + SES + K + E F + L RM A L+ + +P++ +AE+ GY Sbjct: 173 IRDVASYLSISESYLAKLFKVELKITFLEYLTRVRMRRAMELMRDKNMPIYEVAERVGYR 232 Query: 214 STSYFINTFRQYYGVTPHQFAQHS 237 +F TF++ GV P +F S Sbjct: 233 DYRHFSATFKKLAGVGPKEFQMRS 256 >UniRef50_B7S1R2 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S1R2_9GAMM Length = 342 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/92 (26%), Positives = 50/92 (54%), Gaps = 3/92 (3%) Query: 149 IAKRWYLRDI---AERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHT 205 +A+ Y DI A ++ S ++++L++E + F ++L R +AR L +P+ Sbjct: 248 LARPGYFPDIDALAGKIGMSARTLRRRLKNEGSTFREVLEEIRYGLAREYLANTHLPMDE 307 Query: 206 IAEKCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 I+ GY+ F + F+++ G++P + QH+ Sbjct: 308 ISLLLGYTEAGNFSHAFKRWSGLSPSLWRQHA 339 >UniRef50_A4SN34 Transcriptional regulator, AraC family n=2 Tax=Aeromonas RepID=A4SN34_AERS4 Length = 306 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 7/163 (4%) Query: 77 KDRLLINQSPPMPLV-TAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLL----F 131 +D+ I+ LV T + + G++ LS+ +++ L + H P L Sbjct: 135 EDKTFIDDPQASVLVQTQLMKLEWQHGIDRMALSHGVWMLMLHAYRHHTREAPGLPEVRG 194 Query: 132 NSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFS-KILLASRMS 190 V +V+ + D+A+ L ++A++ SE + C + LL R+ Sbjct: 195 GLAPGVIRRVQEYLQADLAEPVTLAELAQQASLSEYHFARMFGQSLGCPPHRYLLGLRLK 254 Query: 191 MARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 A++LL L +IA CG+SS ++F N FR+ +G+TP Q+ Sbjct: 255 RAKQLLAGSD-SLASIAILCGFSSQAHFGNRFREAFGITPGQW 296 >UniRef50_Q05587 Regulatory protein pocR n=57 Tax=Gammaproteobacteria RepID=POCR_SALTY Length = 303 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 1/98 (1%) Query: 140 KVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD-ENTCFSKILLASRMSMARRLLEL 198 K R I ++ L D+A +Y S K + + F+ + RM AR LL Sbjct: 196 KALRYIDAHLSDDLRLEDVASHVYLSPYYFSKLFKKYQGIGFNAWVNRQRMVSARELLCH 255 Query: 199 RQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 + +IA G+S TSYF FRQ Y VTP + Q Sbjct: 256 SDWSIASIARNLGFSQTSYFCKVFRQTYQVTPQAYRQQ 293 >UniRef50_Q7MEL5 AraC-type DNA-binding domain-containing protein n=10 Tax=Vibrio RepID=Q7MEL5_VIBVY Length = 275 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 65/127 (51%), Gaps = 8/127 (6%) Query: 112 LYLSCLSMFSHKKELIPLLFNSI--STVSGKVERLISF---DIAKRWYLRDIAERMYTSE 166 L L+ +++ K+ P L N I +T + +++I F +I + L +A+ M S Sbjct: 142 LALALMALMVEKQ---PELLNMIIRATQFSETQKIIQFIESNIEEEISLETLAKHMGMST 198 Query: 167 SLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYY 226 + +K++L E FS++L R+S A L + + TIA + G+ S ++F F+ Sbjct: 199 ATLKRRLAAEEMSFSQLLKIKRISHAATQLRVTDKSITTIAYESGFKSAAHFSTAFKAVQ 258 Query: 227 GVTPHQF 233 +TP +F Sbjct: 259 QMTPKEF 265 >UniRef50_B2GEN0 Transcriptional regulator n=1 Tax=Lactobacillus fermentum IFO 3956 RepID=B2GEN0_LACF3 Length = 278 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 32/50 (64%) Query: 188 RMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 R++ AR LLE I + +AE+CGY T+ F F++ YG++P Q+ Q + Sbjct: 223 RITKARHLLESSDISIDQVAEQCGYQRTNSFTRVFKRTYGISPRQYRQET 272 >UniRef50_C6PV52 Transcriptional regulator, AraC family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PV52_9CLOT Length = 314 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 1/79 (1%) Query: 155 LRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYS 213 L DIA I + L ++ FS +L SRM A+ LL+ + + IA+ GYS Sbjct: 235 LNDIASHFGYHPVYISRLLPEKTGKTFSALLAESRMRRAKLLLDHTDLSIEKIADMLGYS 294 Query: 214 STSYFINTFRQYYGVTPHQ 232 ++S F F++YYG +P Q Sbjct: 295 NSSNFYKAFKRYYGTSPRQ 313 >UniRef50_C0D9A6 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D9A6_9CLOT Length = 427 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 4/71 (5%) Query: 163 YTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTF 222 Y SE LI+ Q F+ ++L RM A RLL +P+ I GY SYF+ F Sbjct: 328 YVSE-LIR---QITGRSFTDLVLKLRMEEAGRLLAGSVLPISDITRLSGYQEASYFMKVF 383 Query: 223 RQYYGVTPHQF 233 ++YYG TP Q+ Sbjct: 384 KKYYGCTPTQY 394 >UniRef50_Q0VP70 Transcriptional regulator, AraC family n=2 Tax=Alcanivorax RepID=Q0VP70_ALCBS Length = 345 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 41/76 (53%) Query: 158 IAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSY 217 +AER+ + + ++L DE + K+L + R+ AR LL +P IA GYS Sbjct: 259 VAERLGMNVRTLHRRLADEQQSWQKLLDSVRLQQARHLLTTTSLPQADIAAALGYSDIRS 318 Query: 218 FINTFRQYYGVTPHQF 233 F +F+++ +TP Q+ Sbjct: 319 FQRSFKRHTTMTPGQY 334 >UniRef50_C9PGE8 Transcriptional regulator AraC family n=1 Tax=Vibrio furnissii CIP 102972 RepID=C9PGE8_VIBFU Length = 229 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 34/52 (65%) Query: 181 SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQ 232 + L +RM AR++L+ ++PL IAEK G+SS S + FR+++G TP Q Sbjct: 169 GQYLFTARMKRARQMLQDTRLPLIEIAEKVGFSSQSALTHAFRRFFGETPGQ 220 >UniRef50_B3PI13 Transcriptional regulator, AraC family domain protein n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PI13_CELJU Length = 390 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 10/109 (9%) Query: 141 VERLISFDIAKRWYLRD------IAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMAR 193 VE+L SF + + YL +A ++ S L+ + ++ F +++ + R+ A+ Sbjct: 277 VEKLQSFMESNKPYLEPHITVERLAIKLNVSPKLLSSTINNQLQMNFFELIGSYRVEEAK 336 Query: 194 RLL---ELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPG 239 R L +LR +P+H I + CG+SS S F F++ GVTP + Q G Sbjct: 337 RKLADEQLRDLPIHEIMKHCGFSSKSVFNQAFKKAVGVTPSHYRQQYLG 385 >UniRef50_C6D7X2 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D7X2_PAESJ Length = 267 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 1/83 (1%) Query: 155 LRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYS 213 L+++AER S + + ++E FS+ ++ RM A LL+ ++ ++ +A++ GY Sbjct: 184 LKEVAERFAFSPNYLGLMFKEEMGVGFSEYVITMRMERAGELLKDPKVKIYEVADQVGYR 243 Query: 214 STSYFINTFRQYYGVTPHQFAQH 236 YF F++ +G+TP F +H Sbjct: 244 YMPYFSRQFKETFGMTPIDFRRH 266 >UniRef50_B0K339 Response regulator receiver protein n=9 Tax=Thermoanaerobacterales RepID=B0K339_THEPX Length = 365 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 1/83 (1%) Query: 155 LRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYS 213 L IAE++Y + + + + E FS L A R+ A+ LL+ ++ ++ +AE GY+ Sbjct: 281 LNSIAEKLYITPNYLSTLFKSEMGVTFSDYLTACRIEKAKELLKDVKVKIYEVAEAVGYT 340 Query: 214 STSYFINTFRQYYGVTPHQFAQH 236 YF F+ G TP ++ + Sbjct: 341 DQHYFSKVFKNITGFTPKEYREK 363 >UniRef50_B4WYI1 Transcriptional regulator, AraC family protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4WYI1_9GAMM Length = 340 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 38/73 (52%) Query: 158 IAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSY 217 +A+ E +++L EN F I+ R ARR LE + + IAE GYS ++ Sbjct: 256 VAQAFGIPERTFRRQLSKENRPFQGIMDQVRKDKARRYLEDSERSVAEIAELLGYSESAA 315 Query: 218 FINTFRQYYGVTP 230 F+ F ++ GVTP Sbjct: 316 FVRAFERWTGVTP 328 >UniRef50_A0P1V7 Helix-turn-helix, AraC type protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0P1V7_9RHOB Length = 340 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 42/79 (53%) Query: 155 LRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSS 214 LR++AE + SE ++++LQ +S I+ +R +AR LL + +A GY + Sbjct: 254 LREMAEALQISERTLQRRLQHSGRSYSDIVQEARFDLARALLVDPSTRIIDVALAVGYEN 313 Query: 215 TSYFINTFRQYYGVTPHQF 233 +F FR+ GV+P F Sbjct: 314 QQHFARAFRRIAGVSPTSF 332 >UniRef50_Q8EPK8 Transcriptional regulator (AraC/XylS family) n=1 Tax=Oceanobacillus iheyensis RepID=Q8EPK8_OCEIH Length = 769 Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 56/106 (52%), Gaps = 1/106 (0%) Query: 136 TVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARR 194 T+S K+ +I + L IA R++ + + + Q E T FS+ LL R+++A++ Sbjct: 663 TISDKIIHIIQKEYDTAISLDSIAARLHYNPNYLSSIFQKEMKTTFSEYLLKYRINIAKK 722 Query: 195 LLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGT 240 L + + IA K Y+++ FI +FR+ G+TP +F + T Sbjct: 723 WLVDTDLSVKDIAIKLQYNNSQNFIRSFRKIEGITPGKFRSENKKT 768 >UniRef50_Q5WCV1 AraC/XylS family transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WCV1_BACSK Length = 293 Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 1/77 (1%) Query: 158 IAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTS 216 +A+ +Y S+S + K + E + + L A RM A LL+ +P+ I+++ G ++ S Sbjct: 206 LAQDLYLSKSYVSKVFRRETGSSITDYLTARRMKEACHLLQTTSLPIDEISQRIGLTNVS 265 Query: 217 YFINTFRQYYGVTPHQF 233 YFI F++ TPHQ+ Sbjct: 266 YFIQMFKRKTNATPHQY 282 >UniRef50_C0EDG6 Putative uncharacterized protein (Fragment) n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EDG6_9CLOT Length = 517 Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 7/80 (8%) Query: 155 LRDIAERMYTSES----LIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKC 210 L A+ +Y S S + K+KL N F+ L+ RM A++L + +++ IA K Sbjct: 425 LNKAAQSVYVSPSYLSRIFKQKL---NLSFTDYLVKLRMEEAKKLCKQKELKTAQIAAKV 481 Query: 211 GYSSTSYFINTFRQYYGVTP 230 GY SYF F++Y+G+TP Sbjct: 482 GYRDASYFTLCFKKYFGMTP 501 >UniRef50_A6NS86 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NS86_9BACE Length = 425 Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 1/83 (1%) Query: 152 RWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKC 210 R L D A + S S + ++E F+ L A R+S R +L + I ++C Sbjct: 325 RVTLEDTAGHVGLSPSYFSRVFKEEVGESFNSYLTALRISRGRAMLLDTDASIAEICDRC 384 Query: 211 GYSSTSYFINTFRQYYGVTPHQF 233 G+ SYF FR+Y GVTP +F Sbjct: 385 GFDDQSYFTKVFRKYTGVTPGRF 407 >UniRef50_C6VTG9 Transcriptional regulator, AraC family n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VTG9_DYAFD Length = 338 Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 68/130 (52%), Gaps = 7/130 (5%) Query: 107 ILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGK----VERLISFDIAKRWYLRDIAERM 162 + + + L L M H+ +P + +S+++ + V+ ++ ++ ++W L+++A R+ Sbjct: 200 VKAKTVELLLLQMEQHEHLPLPSILSSLNSAHAEQMQLVKNILDENLGQQWSLKELARRV 259 Query: 163 YTSESLIKKKLQD--ENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFIN 220 T+E +KK ++ T F L RM A+ L ++ IA++ GY ++F Sbjct: 260 GTNEFNLKKYFKEVFGETVFG-YLHQKRMETAKDELCQPGSSVNDIAQRMGYKHPTHFTA 318 Query: 221 TFRQYYGVTP 230 F++Y+G+ P Sbjct: 319 AFKKYHGILP 328 >UniRef50_C3NW60 Transcriptional regulator AraC/XylS family n=8 Tax=Bacteria RepID=C3NW60_VIBCJ Length = 271 Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/72 (31%), Positives = 41/72 (56%) Query: 165 SESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQ 224 S S + ++L+ NT F I+ RM +A+ ++E + + + ++ GY S S F N F + Sbjct: 190 SRSTLIRRLKKCNTTFKNIVRECRMDVAKEIIETKNLDIDYVSMIVGYQSKSKFSNYFFE 249 Query: 225 YYGVTPHQFAQH 236 YGVTP + + + Sbjct: 250 KYGVTPMELSGN 261 >UniRef50_C0A2N9 AraC-type DNA-binding domain-containing protein-like protein n=2 Tax=Opitutaceae bacterium TAV2 RepID=C0A2N9_9BACT Length = 354 Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%) Query: 158 IAERMYTSESLIKKKLQDENTC-FSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTS 216 +A SE + + + C F + + A R +A RLL ++ + +A CG+S ++ Sbjct: 264 VASIFRVSEDHLTRLFRTHAHCGFVEFVRAERFRLAERLLADSRLSIKEVAAACGFSLSA 323 Query: 217 YFINTFRQYYGVTPHQFAQHSPG 239 YFI FRQ +G+TP + + G Sbjct: 324 YFIKRFRQQHGLTPAAWRRQQTG 346 >UniRef50_Q885H7 Transcriptional regulator, AraC family n=5 Tax=cellular organisms RepID=Q885H7_PSESM Length = 320 Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 1/77 (1%) Query: 158 IAERMYTSESLIKKKLQD-ENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTS 216 +A+ M SE +K + + SK++ R+ AR LL PL T+A KCG + S Sbjct: 236 LADFMSMSERTFARKYSEVTGSTPSKMVEQLRLEAARHLLVTSSAPLKTVASKCGLGNES 295 Query: 217 YFINTFRQYYGVTPHQF 233 FI +F + Y VTP ++ Sbjct: 296 TFIRSFVKNYAVTPREY 312 >UniRef50_A7M665 Sensor protein n=5 Tax=Bacteroides RepID=A7M665_BACOV Length = 1360 Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 33/50 (66%) Query: 188 RMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 R+ A +LL+ Q+P+ IA + G+SS SYF FR+ +G+ P Q+A+ S Sbjct: 1307 RLKRAAQLLQGSQLPIVEIANRVGFSSPSYFSKCFREMFGMLPKQYAEES 1356 >UniRef50_B9L6G8 Transcriptional regulator n=1 Tax=Nautilia profundicola AmH RepID=B9L6G8_NAUPA Length = 351 Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 45/79 (56%) Query: 155 LRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSS 214 ++ IAE++ S S IK+KL++ENT F K+ R +A +++ + I ++ GYS Sbjct: 268 IQQIAEKLNISVSTIKRKLKNENTTFKKVTETIRKKLALSMIKDKNISYEEMSYLLGYSE 327 Query: 215 TSYFINTFRQYYGVTPHQF 233 S F F++++ +P + Sbjct: 328 YSPFFRAFKKWFKHSPSDY 346 >UniRef50_C9PCW6 Putative transcriptional regulator AraC/XylS family n=1 Tax=Vibrio furnissii CIP 102972 RepID=C9PCW6_VIBFU Length = 289 Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 12/116 (10%) Query: 130 LFNSISTVSGKVERLISFDIAK-----------RWYLRDIAERMYTSESLIKKKLQDE-N 177 L N + T SGK + + +I K L D+AE ++ SES I++ D N Sbjct: 166 LINPMVTHSGKAQSRTNSNIEKIETYLMAHFGENISLNDLAEHLFLSESSIRRLFTDHFN 225 Query: 178 TCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 F++ L R+++A +L +P++ I +K GY++ + F F+ Y V+P ++ Sbjct: 226 ESFTQRLKKIRLNVACDMLAHTDVPVNVIRDKVGYTNQANFNRQFKAYKRVSPSEY 281 >UniRef50_A0KLP7 Transcriptional regulator, AraC family protein n=2 Tax=Aeromonas RepID=A0KLP7_AERHH Length = 461 Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 42/76 (55%) Query: 155 LRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSS 214 L+++ M S + +KLQ E + FS +L +R+S A RLL PL I+++ G+SS Sbjct: 378 LKEVCAAMNVSRWTLNRKLQGEGSSFSTLLREARVSEACRLLGEGDQPLQNISDRVGFSS 437 Query: 215 TSYFINTFRQYYGVTP 230 S F F+ +TP Sbjct: 438 QSAFNRFFKANTRMTP 453 >UniRef50_B7AP83 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7AP83_9BACE Length = 278 Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 1/84 (1%) Query: 151 KRWYLRDIAERMYTSESLIKKKL-QDENTCFSKILLASRMSMARRLLELRQIPLHTIAEK 209 K+ YL D+A++ S S + KK Q F + LL R+ A RLL + IA Sbjct: 188 KQIYLDDVAKQFSISRSYLSKKFKQTTGFGFKEYLLNVRIKEACRLLLETNHSITDIAFA 247 Query: 210 CGYSSTSYFINTFRQYYGVTPHQF 233 CG++ ++YF + FR+ G++P+++ Sbjct: 248 CGFNDSNYFGDAFRRIKGISPNKY 271 >UniRef50_B1R1I5 Transcriptional regulator, AraC family n=2 Tax=Clostridium butyricum RepID=B1R1I5_CLOBU Length = 284 Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 3/81 (3%) Query: 155 LRDIAERMYTSESLIKKKLQDENTCFSKI--LLASRMSMARRLLELRQIPLHTIAEKCGY 212 L DI++ MY S I K + E T S I L+ R+ A+ LL ++P+ IA+ GY Sbjct: 199 LNDISKNMYISSVYISKTFK-EKTGESPINYLINLRLQKAKDLLLETEMPVKIIAQSVGY 257 Query: 213 SSTSYFINTFRQYYGVTPHQF 233 S YF F++YY +P+++ Sbjct: 258 SDAYYFSKLFKKYYEYSPNKY 278 >UniRef50_C6CT15 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CT15_PAESJ Length = 520 Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/156 (25%), Positives = 79/156 (50%), Gaps = 11/156 (7%) Query: 81 LINQSPP-MPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSG 139 L+ +PP + + ++ D FN + + I ++L LS + S +KE + V Sbjct: 370 LVKLTPPGVGVYQSVADFFNLTELKERI-QHLLELSMYRLASLRKE-------GGNRVIE 421 Query: 140 KVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENT-CFSKILLASRMSMARRLLEL 198 V++LI D K L +++E+++ + S + + E ++ +L RM A+ LL+ Sbjct: 422 TVKQLIQQDYDKDLELTELSEKVFLNPSYLSTLFKQETGLTITQYVLQLRMMKAKELLKK 481 Query: 199 R-QIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 R + ++ + E+ GY + YF F++ G+TP ++ Sbjct: 482 RLDLKVYEVGEQVGYPDSIYFNKVFKKMVGITPKEY 517 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P63202 HTH-type transcriptional regulator gadW n=57 Tax... 319 5e-86 UniRef50_B7LQH4 GadW HTH-type(AraC-type) transcriptional positiv... 273 3e-72 UniRef50_Q83RF4 HTH-type transcriptional regulator ydeO n=59 Tax... 219 7e-56 UniRef50_P05052 HTH-type transcriptional regulator appY n=6 Tax=... 219 9e-56 UniRef50_C6UHW7 Putative AraC-type regulatory protein encoded in... 216 5e-55 UniRef50_B7M6J8 Putative AraC-type regulatory protein encoded in... 216 6e-55 UniRef50_A7ZH67 HTH-type transcriptional regulator YdeO n=2 Tax=... 207 3e-52 UniRef50_C6UPG2 Putative envelope protein encoded within prophag... 198 9e-50 UniRef50_Q93SE2 Putative uncharacterized protein n=1 Tax=Escheri... 185 1e-45 UniRef50_Q7NTA1 Putative uncharacterized protein n=1 Tax=Chromob... 161 2e-38 UniRef50_Q9EYV5 HTH-type transcriptional regulator gadX n=60 Tax... 150 3e-35 UniRef50_B7LQH5 HTH-type transcriptional regulator gadX for glut... 148 1e-34 UniRef50_Q65QI0 AraC protein n=1 Tax=Mannheimia succiniciproduce... 148 2e-34 UniRef50_P33234 HTH-type transcriptional regulator adiY n=102 Ta... 142 1e-32 UniRef50_C5BFY6 Transcriptional regulator, AraC family protein n... 141 1e-32 UniRef50_D0YX71 Transcriptional regulator AraC family protein n=... 140 6e-32 UniRef50_Q03Q27 Transcriptional regulator, AraC family n=1 Tax=L... 138 1e-31 UniRef50_A9MGM0 Putative uncharacterized protein n=1 Tax=Salmone... 138 1e-31 UniRef50_Q2BYZ8 Transcriptional regulator, AraC family protein n... 137 3e-31 UniRef50_B8FMW7 Transcriptional regulator, AraC family n=1 Tax=D... 137 3e-31 UniRef50_C4GLE7 Putative uncharacterized protein n=1 Tax=Kingell... 135 1e-30 UniRef50_B5FRI8 AraC family regulatory protein n=32 Tax=Enteroba... 135 2e-30 UniRef50_A6AXU3 Transcriptional regulator, AraC family protein n... 134 2e-30 UniRef50_A6X415 Helix-turn-helix-domain containing protein AraC ... 134 3e-30 UniRef50_C4T4E3 AraC-type DNA-binding domain-containing protein ... 133 6e-30 UniRef50_Q2SCQ2 AraC-type DNA-binding domain-containing protein ... 133 6e-30 UniRef50_P32326 Urease operon transcriptional activator n=12 Tax... 132 1e-29 UniRef50_A0Z3Z2 Transcriptional regulator, AraC family protein n... 132 1e-29 UniRef50_B5ZYE2 Transcriptional regulator, AraC family n=12 Tax=... 132 1e-29 UniRef50_A3JHC0 Transcriptional regulator, AraC family protein n... 131 1e-29 UniRef50_A4XWL1 Transcriptional regulator, AraC family n=5 Tax=B... 131 2e-29 UniRef50_A7XY51 LngS n=3 Tax=Enterobacteriaceae RepID=A7XY51_ECOLX 130 3e-29 UniRef50_P41782 Transcriptional regulator hilD n=38 Tax=Salmonel... 130 3e-29 UniRef50_B8KKU1 Transcriptional regulator OruR n=1 Tax=gamma pro... 130 4e-29 UniRef50_B5JUK1 AraC-type DNA-binding domain-containing protein ... 130 6e-29 UniRef50_B5JTW9 Helix-turn-helix-domain containing protein, AraC... 129 7e-29 UniRef50_A6T768 Bacterial regulatory protein, AraC family n=48 T... 128 1e-28 UniRef50_A1TWU6 Transcriptional regulator, AraC family n=2 Tax=M... 128 2e-28 UniRef50_A4TK67 Transcriptional regulator, AraC family n=35 Tax=... 128 2e-28 UniRef50_Q0VN05 Transcriptional regulator, AraC family n=2 Tax=A... 128 2e-28 UniRef50_C6CUY4 Two component transcriptional regulator, AraC fa... 127 3e-28 UniRef50_Q2S8T9 AraC-type DNA-binding domain-containing protein ... 127 3e-28 UniRef50_Q0B4N6 Transcriptional regulator, AraC family n=16 Tax=... 126 5e-28 UniRef50_A7ZGX7 Transcriptional regulator, AraC family n=1 Tax=E... 126 6e-28 UniRef50_A0KMW4 Transcriptional regulator, AraC/XylS family n=2 ... 126 7e-28 UniRef50_B9LZS6 Transcriptional regulator, AraC family n=1 Tax=G... 126 8e-28 UniRef50_Q2SDH6 AraC-type DNA-binding domain-containing protein ... 126 8e-28 UniRef50_B1YT91 Transcriptional regulator, AraC family n=2 Tax=B... 126 8e-28 UniRef50_Q8Z4A6 Transcriptional regulator sirC n=36 Tax=Salmonel... 126 8e-28 UniRef50_A1HM14 Two component transcriptional regulator, AraC fa... 126 9e-28 UniRef50_A6GLT9 Transcriptional regulator, AraC family protein n... 125 1e-27 UniRef50_C0VNX7 AraC family transcriptional regulator n=1 Tax=Ac... 125 1e-27 UniRef50_B4X435 Transcriptional regulator, AraC family protein n... 125 1e-27 UniRef50_A6CLV0 AraC-type DNA-binding domain-containing protein ... 125 1e-27 UniRef50_P43459 Transcriptional activator perA n=24 Tax=Escheric... 125 2e-27 UniRef50_C6CTP9 Two component transcriptional regulator, AraC fa... 125 2e-27 UniRef50_D0Z2K1 Transcriptional regulator AraC family n=1 Tax=Ph... 124 2e-27 UniRef50_B3EYL7 Two-component response regulator n=5 Tax=Firmicu... 124 2e-27 UniRef50_B7S017 Transcriptional regulator, AraC family n=1 Tax=m... 124 3e-27 UniRef50_Q8GA34 AraC-like transcriptional regulator n=2 Tax=Esch... 124 3e-27 UniRef50_C6CVC0 Two component transcriptional regulator, AraC fa... 124 3e-27 UniRef50_Q5WK40 Two-component response regulator n=1 Tax=Bacillu... 123 4e-27 UniRef50_Q2SUV3 Transcriptional regulator, AraC family n=34 Tax=... 123 4e-27 UniRef50_Q88C44 Transcriptional regulator, AraC family n=16 Tax=... 123 4e-27 UniRef50_Q21JI5 Transcriptional regulator, AraC family n=1 Tax=S... 123 4e-27 UniRef50_A4XTI6 Transcriptional regulator, AraC family n=6 Tax=P... 123 5e-27 UniRef50_B6RAA0 Transcriptional regulator, AraC family n=4 Tax=A... 123 5e-27 UniRef50_A4Y0S8 Transcriptional regulator, AraC family n=1 Tax=P... 123 5e-27 UniRef50_A8S8Z3 Putative uncharacterized protein n=1 Tax=Faecali... 123 5e-27 UniRef50_A6NS86 Putative uncharacterized protein n=1 Tax=Bactero... 123 6e-27 UniRef50_C6CT15 Two component transcriptional regulator, AraC fa... 123 6e-27 UniRef50_B5JW86 Helix-turn-helix-domain containing protein, AraC... 123 6e-27 UniRef50_B7S1R2 Transcriptional regulator, AraC family n=1 Tax=m... 123 6e-27 UniRef50_Q9KFJ6 Transcriptional regulator (AraC/XylS family) n=2... 123 6e-27 UniRef50_C4G7K2 Putative uncharacterized protein n=1 Tax=Abiotro... 123 7e-27 UniRef50_P10805 Porin thermoregulatory protein envY n=41 Tax=Ent... 123 7e-27 UniRef50_C8WRN2 Transcriptional regulator, AraC family n=2 Tax=A... 122 9e-27 UniRef50_D0SJB7 Predicted protein n=1 Tax=Acinetobacter junii SH... 122 9e-27 UniRef50_A8H057 Transcriptional regulator, AraC family n=2 Tax=S... 122 9e-27 UniRef50_C3K2A2 Putative putative AraC-family regulatory protein... 122 1e-26 UniRef50_B4X5H8 Transcriptional regulator, AraC family protein n... 122 1e-26 UniRef50_C5T089 Transcriptional regulator, AraC family n=1 Tax=A... 122 1e-26 UniRef50_B2HYH2 AraC-type DNA-binding domain-containing protein ... 122 1e-26 UniRef50_D2YK24 Type 4 prepilin-like protein leader peptide-proc... 122 1e-26 UniRef50_D2TIS0 Transcriptional regulator of virulence RegA n=5 ... 121 1e-26 UniRef50_B2HXY7 AraC-type DNA-binding domain-containing protein ... 121 1e-26 UniRef50_B4WXJ1 Transcriptional regulator, AraC family protein n... 121 1e-26 UniRef50_B7V3C5 Probable transcriptional regulator n=7 Tax=Pseud... 121 2e-26 UniRef50_C4UFJ5 Uncharacterized HTH-type transcriptional regulat... 121 2e-26 UniRef50_B7RUG5 Transcriptional regulator, AraC family n=1 Tax=m... 121 2e-26 UniRef50_A9GN71 Tra n=1 Tax=Sorangium cellulosum 'So ce 56' RepI... 121 2e-26 UniRef50_C4G4K9 Putative uncharacterized protein n=1 Tax=Abiotro... 121 2e-26 UniRef50_B2I0Q2 AraC-type DNA-binding domain-containing protein ... 121 2e-26 UniRef50_B8HZ47 Transcriptional regulator, AraC family n=1 Tax=C... 121 2e-26 UniRef50_A6WTM9 Helix-turn-helix-domain containing protein AraC ... 121 2e-26 UniRef50_A3K790 Putative transcriptional regulator protein (AraC... 121 2e-26 UniRef50_C5EIB6 Transcriptional regulator n=3 Tax=Clostridiales ... 121 2e-26 UniRef50_A5F384 TCP pilus virulence regulatory protein n=21 Tax=... 121 3e-26 UniRef50_C4V3H9 Response regulator n=2 Tax=Selenomonas RepID=C4V... 121 3e-26 UniRef50_A1U2D8 Transcriptional regulator, AraC family n=2 Tax=M... 121 3e-26 UniRef50_Q65NG7 Putative uncharacterized protein n=1 Tax=Bacillu... 120 3e-26 UniRef50_B5JY44 Transcriptional regulator, AraC family, putative... 120 4e-26 UniRef50_C4L2Y3 Two component transcriptional regulator, AraC fa... 120 4e-26 UniRef50_UPI0001C374E0 transcriptional regulator, AraC family pr... 120 4e-26 UniRef50_Q2SUK1 Transcriptional regulator, AraC family n=37 Tax=... 120 4e-26 UniRef50_A3M7C3 Putative transcriptional regulator (AraC family)... 120 4e-26 UniRef50_B4X114 Transcriptional regulator, AraC family protein n... 120 4e-26 UniRef50_B0K339 Response regulator receiver protein n=9 Tax=Ther... 120 4e-26 UniRef50_P43460 HTH-type transcriptional activator csvR n=12 Tax... 120 4e-26 UniRef50_Q0VP70 Transcriptional regulator, AraC family n=2 Tax=A... 120 5e-26 UniRef50_C6PV52 Transcriptional regulator, AraC family n=1 Tax=C... 120 5e-26 UniRef50_A4SN34 Transcriptional regulator, AraC family n=2 Tax=A... 120 5e-26 UniRef50_Q0VLF5 Transcriptional regulator, AraC family n=2 Tax=A... 120 5e-26 UniRef50_C6J1Q8 Two component transcriptional regulator n=1 Tax=... 120 5e-26 UniRef50_UPI0001851370 two component AraC family transcriptional... 120 6e-26 UniRef50_C6CT66 Two component transcriptional regulator, AraC fa... 120 6e-26 UniRef50_C4G6T3 Putative uncharacterized protein n=1 Tax=Abiotro... 120 6e-26 UniRef50_B8KPR3 Helix-turn-helix-domain containing protein, AraC... 119 7e-26 UniRef50_A4BF80 Transcriptional regulator, AraC family protein n... 119 7e-26 UniRef50_UPI0001788EC5 two component transcriptional regulator, ... 119 7e-26 UniRef50_A1HMP5 Two component transcriptional regulator, AraC fa... 119 7e-26 UniRef50_A8ZYY6 Transcriptional regulator, AraC family n=1 Tax=D... 119 8e-26 UniRef50_UPI0001C3522D two-component system, response regulator ... 119 9e-26 UniRef50_C0EIY2 Putative uncharacterized protein n=1 Tax=Clostri... 119 1e-25 UniRef50_B4X4X5 Transcriptional regulator, AraC family protein n... 119 1e-25 UniRef50_C6J2Y7 Transcriptional regulator (Fragment) n=1 Tax=Pae... 119 1e-25 UniRef50_UPI0000F30067 putative transcriptional regulator AraC/X... 119 1e-25 UniRef50_C5CTH9 Transcriptional regulator, AraC family n=1 Tax=V... 119 1e-25 UniRef50_C6CXP8 Transcriptional regulator, AraC family n=1 Tax=P... 118 1e-25 UniRef50_A4C5C3 AraC-type DNA-binding domain-containing protein ... 118 1e-25 UniRef50_Q1GHD7 Transcriptional regulator, AraC family n=2 Tax=R... 118 1e-25 UniRef50_Q8EPK8 Transcriptional regulator (AraC/XylS family) n=1... 118 1e-25 UniRef50_Q8RSF6 Putative transcriptional regulator protein n=2 T... 118 2e-25 UniRef50_Q05587 Regulatory protein pocR n=57 Tax=Gammaproteobact... 118 2e-25 UniRef50_D0LUU5 Transcriptional regulator, AraC family n=1 Tax=H... 118 2e-25 UniRef50_C9RT55 Two component transcriptional regulator, AraC fa... 118 2e-25 UniRef50_Q3KCK4 Putative transcriptional Regulator, AraC family ... 118 2e-25 UniRef50_UPI0001C35C05 AraC family transcriptional regulator n=1... 118 2e-25 UniRef50_C6D7X2 Two component transcriptional regulator, AraC fa... 118 2e-25 UniRef50_Q5WIX4 AraC/XylS family transcriptional regulator n=1 T... 118 2e-25 UniRef50_A6GMI7 Putative transcriptional regulator, AraC family ... 118 2e-25 UniRef50_A5F2L6 Transcriptional regulator, AraC/XylS family n=33... 118 2e-25 UniRef50_A2PNS5 Transcriptional regulator, AraC family protein n... 118 2e-25 UniRef50_Q7MEL5 AraC-type DNA-binding domain-containing protein ... 117 3e-25 UniRef50_Q1YPC6 Transcriptional regulator OruR n=4 Tax=unclassif... 117 3e-25 UniRef50_Q8GA53 Putative CS12 fimbrial-like upstream regulatory ... 117 3e-25 UniRef50_C2BXH0 Response regulator n=1 Tax=Listeria grayi DSM 20... 117 3e-25 UniRef50_A1ZHS6 Transcriptional regulator, AraC family protein n... 117 3e-25 UniRef50_B8KNS6 Transcriptional regulator, AraC family n=1 Tax=g... 117 3e-25 UniRef50_B7GX20 Bacterial regulatory helix-turn-helix protein, A... 117 3e-25 UniRef50_A6Y0W0 AraC-type DNA-binding domain-containing protein ... 117 3e-25 UniRef50_P23774 987P fimbrial operon positive regulatory protein... 117 3e-25 UniRef50_B5R1L9 Fimbrial operon positive regulatory protein n=11... 117 4e-25 UniRef50_Q21KL2 Transcriptional regulator, AraC family n=5 Tax=P... 117 4e-25 UniRef50_C2LMQ1 Virulence regulon transcriptional activator VirF... 117 4e-25 UniRef50_A9U8F0 Predicted protein (Fragment) n=1 Tax=Physcomitre... 117 4e-25 Sequences not found previously or not previously below threshold: UniRef50_C6LLK3 Putative two-component response regulator n=1 Ta... 130 4e-29 UniRef50_A6GTF7 Putative transcriptional regulator n=1 Tax=Limno... 129 6e-29 UniRef50_C6D5X4 Two component transcriptional regulator, AraC fa... 128 2e-28 UniRef50_C6JEP4 Two component transcriptional regulator n=3 Tax=... 128 2e-28 UniRef50_B5JU19 Transcriptional regulator, AraC family n=1 Tax=g... 126 6e-28 UniRef50_UPI000178AA55 transcriptional regulator, AraC family n=... 126 9e-28 UniRef50_C9RVZ3 Two component transcriptional regulator, AraC fa... 125 1e-27 UniRef50_Q1N3I2 AraC-type DNA-binding domain-containing protein ... 125 2e-27 UniRef50_C0CVY3 Putative uncharacterized protein n=1 Tax=Clostri... 125 2e-27 UniRef50_C6IYS4 Response regulator n=1 Tax=Paenibacillus sp. ora... 125 2e-27 UniRef50_C5BHZ4 Helix-turn-helix-domain containing protein, AraC... 124 2e-27 UniRef50_Q2RGN4 Two component transcriptional regulator, AraC fa... 124 2e-27 UniRef50_B2HZ04 AraC-type DNA-binding domain-containing protein ... 124 3e-27 UniRef50_C9NYS3 Transcriptional regulator AraC family n=9 Tax=Vi... 124 3e-27 UniRef50_B0K3C5 Response regulator receiver protein n=4 Tax=Ther... 124 3e-27 UniRef50_A7HP74 Helix-turn-helix-domain containing protein AraC ... 124 3e-27 UniRef50_Q2SDE2 AraC-type DNA-binding domain-containing protein ... 123 3e-27 UniRef50_A1TXY8 Transcriptional regulator, AraC family n=2 Tax=M... 123 4e-27 UniRef50_Q2SNQ4 AraC-type DNA-binding domain-containing protein ... 123 6e-27 UniRef50_UPI0001788F54 two component transcriptional regulator, ... 122 8e-27 UniRef50_A4VG28 Transcriptional regulator, AraC family n=1 Tax=P... 121 2e-26 UniRef50_C9KMM6 Putative AraC-type DNA-binding domain-containing... 121 2e-26 UniRef50_C5ETL2 Two component transcriptional regulator n=1 Tax=... 121 3e-26 UniRef50_D1PMJ1 Transcriptional regulator, AraC family n=2 Tax=R... 121 3e-26 UniRef50_B9K0J1 AraC-type DNA-binding domain-containing protein ... 121 3e-26 UniRef50_B0ABU8 Putative uncharacterized protein n=1 Tax=Clostri... 120 3e-26 UniRef50_A1ZQH8 Transcriptional regulator, AraC family protein n... 120 3e-26 UniRef50_Q2SPI7 AraC-type DNA-binding domain-containing protein ... 120 3e-26 UniRef50_C6IYL2 Two component transcriptional regulator n=1 Tax=... 120 4e-26 UniRef50_B1JCK3 Transcriptional regulator, AraC family n=16 Tax=... 120 4e-26 UniRef50_C4Z204 AraC family transcriptional regulator, L-rhamnos... 120 4e-26 UniRef50_C5D8H7 Two component transcriptional regulator, AraC fa... 120 4e-26 UniRef50_A4XMI3 Two component transcriptional regulator, AraC fa... 120 4e-26 UniRef50_UPI0001788C4E two component transcriptional regulator, ... 120 5e-26 UniRef50_UPI0001745884 transcriptional regulator n=1 Tax=Verruco... 120 5e-26 UniRef50_C6LLM9 Two-component response regulator n=1 Tax=Bryante... 120 5e-26 UniRef50_A3WY00 Transcriptional regulator, AraC family protein n... 120 6e-26 UniRef50_C6IZ62 Transcriptional regulator n=1 Tax=Paenibacillus ... 120 6e-26 UniRef50_A1TY01 Transcriptional regulator, AraC family n=2 Tax=M... 120 6e-26 UniRef50_Q0VSF4 Transcriptional regulator, AraC family n=2 Tax=A... 120 6e-26 UniRef50_A8RW54 Putative uncharacterized protein n=1 Tax=Clostri... 120 6e-26 UniRef50_C6CTL6 Two component transcriptional regulator, AraC fa... 119 7e-26 UniRef50_D0S2A2 Transcriptional regulator n=1 Tax=Acinetobacter ... 119 7e-26 UniRef50_B7S369 Transcriptional regulator, AraC family n=1 Tax=m... 119 7e-26 UniRef50_UPI0001B9ECE6 two component transcriptional regulator, ... 119 7e-26 UniRef50_B7RUA5 Transcriptional regulator, AraC family n=1 Tax=m... 119 8e-26 UniRef50_C6QRS7 Two component transcriptional regulator, AraC fa... 119 8e-26 UniRef50_C6CRZ9 Two component transcriptional regulator, AraC fa... 119 9e-26 UniRef50_B0K234 Response regulator receiver protein n=8 Tax=Ther... 119 1e-25 UniRef50_A1RF43 Transcriptional regulator, AraC family n=2 Tax=S... 119 1e-25 UniRef50_A0Q2M6 Transcriptional regulatory protein n=6 Tax=Clost... 119 1e-25 UniRef50_C6CSY2 Two component transcriptional regulator, AraC fa... 119 1e-25 UniRef50_Q1N693 AraC-type DNA-binding domain-containing protein ... 119 1e-25 UniRef50_C6CWB0 Two component transcriptional regulator, AraC fa... 119 1e-25 UniRef50_UPI00017895AE two component transcriptional regulator, ... 119 1e-25 UniRef50_UPI0001789612 two component transcriptional regulator, ... 118 1e-25 UniRef50_C6D3S3 Two component transcriptional regulator, AraC fa... 118 1e-25 UniRef50_C6CVB2 Two component transcriptional regulator, AraC fa... 118 1e-25 UniRef50_B7GJK9 DNA-binding response regulator (Contains REC and... 118 1e-25 UniRef50_A8SQD4 Putative uncharacterized protein n=2 Tax=Coproco... 118 1e-25 UniRef50_Q9K9C1 Two-component response regulator n=1 Tax=Bacillu... 118 1e-25 UniRef50_A4A9K9 AraC-family transcriptional regulator n=3 Tax=un... 118 1e-25 UniRef50_C6CZ23 Two component transcriptional regulator, AraC fa... 118 1e-25 UniRef50_UPI000178921D transcriptional regulator, AraC family n=... 118 1e-25 UniRef50_C0FP55 Putative uncharacterized protein n=1 Tax=Rosebur... 118 1e-25 UniRef50_B7RX05 Transcriptional regulator, AraC family n=1 Tax=m... 118 2e-25 UniRef50_B0NDZ7 Putative uncharacterized protein n=1 Tax=Clostri... 118 2e-25 UniRef50_B5XY24 Transcriptional regulator, AraC family n=3 Tax=K... 118 2e-25 UniRef50_A8RUC8 Putative uncharacterized protein n=1 Tax=Clostri... 118 2e-25 UniRef50_A5EF29 Transcriptional regulator, AraC family n=2 Tax=P... 118 2e-25 UniRef50_Q0VMP4 Transcriptional regulator, AraC family n=2 Tax=A... 118 2e-25 UniRef50_C6D127 Two component transcriptional regulator, AraC fa... 118 2e-25 UniRef50_C5EHL9 Predicted protein n=1 Tax=Clostridiales bacteriu... 118 2e-25 UniRef50_B1YJP0 Two component transcriptional regulator, AraC fa... 118 2e-25 UniRef50_Q1N5F0 AraC-type DNA-binding domain-containing protein ... 118 2e-25 UniRef50_A7B093 Putative uncharacterized protein n=1 Tax=Ruminoc... 118 2e-25 UniRef50_UPI0001C36936 two component transcriptional regulator, ... 118 2e-25 UniRef50_A4TFK9 Transcriptional regulator, AraC family n=11 Tax=... 118 2e-25 UniRef50_C6IY72 Response regulator n=1 Tax=Paenibacillus sp. ora... 118 2e-25 UniRef50_C6IVE2 Response regulator n=1 Tax=Paenibacillus sp. ora... 117 2e-25 UniRef50_A9KQP4 Two component transcriptional regulator, AraC fa... 117 3e-25 UniRef50_C4FUN9 Putative uncharacterized protein n=1 Tax=Catonel... 117 3e-25 UniRef50_Q47ZJ7 Transcriptional regulator, araC family n=2 Tax=A... 117 3e-25 UniRef50_D0IA59 Transcriptional regulator AraC family n=1 Tax=Gr... 117 3e-25 UniRef50_C0EDX0 Putative uncharacterized protein n=1 Tax=Clostri... 117 3e-25 UniRef50_Q390J5 Transcriptional regulator, AraC family n=3 Tax=B... 117 3e-25 UniRef50_C6J2H9 Response regulator n=1 Tax=Paenibacillus sp. ora... 117 3e-25 UniRef50_UPI0001789626 transcriptional regulator, AraC family n=... 117 3e-25 UniRef50_B8I425 Two component transcriptional regulator, AraC fa... 117 3e-25 UniRef50_B9MLQ2 Two component transcriptional regulator, AraC fa... 117 3e-25 UniRef50_B6B8R5 Transcriptional regulator, AraC family n=1 Tax=R... 117 4e-25 UniRef50_A4XMG0 Two component transcriptional regulator, AraC fa... 117 4e-25 UniRef50_C7PMQ7 Transcriptional regulator, AraC family n=1 Tax=C... 117 4e-25 UniRef50_C2H3H7 Response regulator n=23 Tax=Enterococcus faecali... 117 4e-25 >UniRef50_P63202 HTH-type transcriptional regulator gadW n=57 Tax=Enterobacteriaceae RepID=GADW_ECO57 Length = 242 Score = 319 bits (818), Expect = 5e-86, Method: Composition-based stats. Identities = 242/242 (100%), Positives = 242/242 (100%) Query: 1 MTHVCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCH 60 MTHVCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCH Sbjct: 1 MTHVCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCH 60 Query: 61 YLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMF 120 YLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMF Sbjct: 61 YLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMF 120 Query: 121 SHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCF 180 SHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCF Sbjct: 121 SHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCF 180 Query: 181 SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGT 240 SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGT Sbjct: 181 SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGT 240 Query: 241 FS 242 FS Sbjct: 241 FS 242 >UniRef50_B7LQH4 GadW HTH-type(AraC-type) transcriptional positive regulator of gadA and gadBC, in absence of gadX; repressor of gadX n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LQH4_ESCF3 Length = 245 Score = 273 bits (699), Expect = 3e-72, Method: Composition-based stats. Identities = 149/241 (61%), Positives = 189/241 (78%) Query: 1 MTHVCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCH 60 M HVCSV+L+ RS DIY+E++ +++ +S++L+++ LA R L+IDE V + Sbjct: 1 MAHVCSVVLVCRSLDIYYEKKHLNIIKDSLILMDEKLAFRIPHNCSWVRSLEIDECIVSN 60 Query: 61 YLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMF 120 YLQ+IR + G H++ RLLIN PP+PLV AIFDSF+ + +P LSNMLY SCLS+F Sbjct: 61 YLQHIRHPAQYSGKHTRHRLLINHQPPLPLVRAIFDSFDAAETLTPTLSNMLYFSCLSLF 120 Query: 121 SHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCF 180 S EL+PLLFNSI+T+SGKVER+IS D ++RWYLRD+AE++YTSESLIKKKLQDENT F Sbjct: 121 SMHDELVPLLFNSINTLSGKVERIISVDTSRRWYLRDVAEKLYTSESLIKKKLQDENTSF 180 Query: 181 SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGT 240 SKILLASRM+ A+ LLEL Q+PL IAEKCGYSSTSYFINTFRQYYGVTPHQ++ S + Sbjct: 181 SKILLASRMARAKTLLELNQMPLTVIAEKCGYSSTSYFINTFRQYYGVTPHQYSHRSAVS 240 Query: 241 F 241 F Sbjct: 241 F 241 >UniRef50_Q83RF4 HTH-type transcriptional regulator ydeO n=59 Tax=Enterobacteriaceae RepID=YDEO_SHIFL Length = 253 Score = 219 bits (558), Expect = 7e-56, Method: Composition-based stats. Identities = 81/244 (33%), Positives = 131/244 (53%), Gaps = 8/244 (3%) Query: 1 MTHVCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCH 60 M+ VCSVI I +F+ + + + IL+++ + F + + +E T+ Sbjct: 1 MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFNENTIKK 60 Query: 61 YLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMF 120 YLQ + + + + L + P L+ + N N S +L SCLS+F Sbjct: 61 YLQCTN--IQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIF 118 Query: 121 SHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCF 180 + K I LL N + +VSGKV +++ +A W L+DI + +Y SESL+KKKL+ E T F Sbjct: 119 AACKGFITLLTNGVLSVSGKVRNIVNMKLAHPWKLKDICDCLYISESLLKKKLKQEQTTF 178 Query: 181 SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTP----HQFA-Q 235 S+ILL +RM A+ L+ + ++ IAE+CGY+STSYFI FR+++G +P ++ Q Sbjct: 179 SQILLDARMQHAKNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQ 237 Query: 236 HSPG 239 G Sbjct: 238 RHTG 241 >UniRef50_P05052 HTH-type transcriptional regulator appY n=6 Tax=Escherichia coli RepID=APPY_ECOLI Length = 249 Score = 219 bits (557), Expect = 9e-56, Method: Composition-based stats. Identities = 83/242 (34%), Positives = 141/242 (58%) Query: 1 MTHVCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCH 60 M +VCSV+ I +SFD+ ++ IS S+ ++ + + C R +DID+ T Sbjct: 1 MDYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLS 60 Query: 61 YLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMF 120 + ++ K+ + + PP+ LV ++F+ + +S L L +S L+MF Sbjct: 61 FFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMF 120 Query: 121 SHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCF 180 ++ + + +I+T + K+ +ISF+I ++W+L+DIAE +YTSESLIKK+L+DE T F Sbjct: 121 KKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSF 180 Query: 181 SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGT 240 ++IL +RM A++L+ ++ +A+KCGY+STSYFI F+ YYGVTP + + G Sbjct: 181 TEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGV 240 Query: 241 FS 242 Sbjct: 241 TD 242 >UniRef50_C6UHW7 Putative AraC-type regulatory protein encoded in prophage n=2 Tax=Escherichia coli RepID=C6UHW7_ECOBR Length = 237 Score = 216 bits (551), Expect = 5e-55, Method: Composition-based stats. Identities = 78/233 (33%), Positives = 132/233 (56%), Gaps = 1/233 (0%) Query: 1 MTHVCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCH 60 M ++CS+IL+ SF + ++ I + +L+E NL D F+ + +D++E TV Sbjct: 1 MPYICSIILVLNSFGVRIGKEDILFKKGNAVLIEYNLKDLFSSNTDHLMIVDVEEKTVND 60 Query: 61 YLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMF 120 + +N P ++ L++ + L+ + N ++ N + L+CL++ Sbjct: 61 FFKNYTLSPFSVRRFYPSYLIV-ECEDFSLLKNLVACLNCDSKTVDVVRNQISLACLAVL 119 Query: 121 SHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCF 180 S +K + LF S++++ KV+ +I DI+ W L DI+ R+Y SESL+K+KL+DE F Sbjct: 120 SSEKIVQSFLFGSLNSLGCKVKAIIHSDISASWRLCDISSRLYMSESLLKRKLKDEGLSF 179 Query: 181 SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 SK++L RM MA+RLL + +A CGY + SYF++ FR Y+GV PHQ+ Sbjct: 180 SKLILEERMMMAQRLLIYSNHTVGKVAGICGYDNASYFVSVFRGYFGVPPHQY 232 >UniRef50_B7M6J8 Putative AraC-type regulatory protein encoded in prophage CP-933H ( transcription regulator) n=16 Tax=Escherichia RepID=B7M6J8_ECO8A Length = 250 Score = 216 bits (550), Expect = 6e-55, Method: Composition-based stats. Identities = 81/240 (33%), Positives = 122/240 (50%), Gaps = 1/240 (0%) Query: 1 MTHVCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCH 60 M CSVILI SFD+Y ++ + L S +L++ + D F D + Sbjct: 4 MATTCSVILILESFDVYFGKESVFLERGSSVLVDSSSRDFFLTYPERVIVADFGAEFISR 63 Query: 61 YLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMF 120 YL+ + L IN L+ + N I + +CLS F Sbjct: 64 YLKANNLRDISDCREYPSYLKIN-FADFSLIKGLISWANHCAEYIEIFDESIAFTCLSAF 122 Query: 121 SHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCF 180 S +K+ LF + + KV+ +I D++ W L+DI+ R+Y SESL+K+KL++E F Sbjct: 123 SSEKQFGVFLFECLKSTEAKVKTIIHTDLSAPWRLKDISSRLYLSESLLKRKLKEEGVSF 182 Query: 181 SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGT 240 SKI+L RM MA LL R P+ +A+ CGY+S SYF FR+Y+GV+P Q++Q S + Sbjct: 183 SKIILDERMQMAEYLLSTRCYPISKVAKVCGYASVSYFTYVFRRYFGVSPSQYSQRSSES 242 >UniRef50_A7ZH67 HTH-type transcriptional regulator YdeO n=2 Tax=Escherichia coli RepID=A7ZH67_ECO24 Length = 240 Score = 207 bits (527), Expect = 3e-52, Method: Composition-based stats. Identities = 85/236 (36%), Positives = 130/236 (55%), Gaps = 2/236 (0%) Query: 1 MTHVCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCH 60 M VC ILI++ + + + L+ +LLL+ + D S ++++E TV + Sbjct: 7 MPGVCYFILIKKPINFQFLKDFLILNYGDVLLLKHSERDFLQSYSDKYLEIELNEDTVRN 66 Query: 61 YLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMF 120 YL + L + +L L+ ++ D+ N P + ++ S LS+F Sbjct: 67 YLSYYNHCEKQF-LETPPCILRKSFAYPDLLISMIDNINSQNHIHPDFKDAIFFSLLSVF 125 Query: 121 SHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCF 180 S L L + + T SGKV + D++K W LRD+A+ +Y SESLIKKKL ENT F Sbjct: 126 SDVANLRAFLTSGMPTFSGKVRSIFLSDVSKHWKLRDLADYLYMSESLIKKKLLLENTSF 185 Query: 181 SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 SKILL +RMS+A +LL+ P+ ++E CG+SSTSYF+ FRQYY TP ++ +H Sbjct: 186 SKILLDTRMSLAIKLLKQ-NHPIKYVSEMCGFSSTSYFVCLFRQYYECTPRKYLKH 240 >UniRef50_C6UPG2 Putative envelope protein encoded within prophage CP-933N n=34 Tax=Escherichia coli RepID=C6UPG2_ECO5T Length = 237 Score = 198 bits (505), Expect = 9e-50, Method: Composition-based stats. Identities = 80/237 (33%), Positives = 123/237 (51%), Gaps = 4/237 (1%) Query: 1 MTHVCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCH 60 M VCSVI++ +I+ E+ +SL S++L K + F + DI+ V Sbjct: 1 MVVVCSVIMVCSPINIFLEKDTLSLKPGSVVLATKCIRALFLMHYGKVKIFDINHSIVSQ 60 Query: 61 YLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMF 120 YL+ +L R L + + P L A+ S SG + + L ++CLS+F Sbjct: 61 YLEIQHKLTRTHLTDVPLYLSLEPNNP-ALAEALITSQRFSGDTTDMF---LMMACLSLF 116 Query: 121 SHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCF 180 + ++ L +S++S KV +I DI+ W L IA R++ SESL+K KL++E F Sbjct: 117 ESDERILLFLSGCLSSISAKVRAIIQTDISASWTLGAIALRLHMSESLLKIKLKNEGHMF 176 Query: 181 SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 S++LL RM +A +L R +AEKCGYSS SYFI+ F +YYG P ++ Sbjct: 177 SRLLLEERMRVAVNMLCSRHGYGQAVAEKCGYSSWSYFISVFHRYYGFPPDRYVSRQ 233 >UniRef50_Q93SE2 Putative uncharacterized protein n=1 Tax=Escherichia coli RepID=Q93SE2_ECOLX Length = 245 Score = 185 bits (469), Expect = 1e-45, Method: Composition-based stats. Identities = 75/236 (31%), Positives = 127/236 (53%), Gaps = 2/236 (0%) Query: 4 VCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQ 63 VC VIL+ R F+ +K+ +LL + F + L IDE V Y++ Sbjct: 3 VCYVILVNRPFETEIAGKKLFFQKNDVLLTDNISQSFFLRHPGNVTELRIDECIVRKYME 62 Query: 64 NIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHK 123 + ++ + S + + L+ + + + S ++ +CLS+FS Sbjct: 63 SADRIQHSDSAVSVP-FIKTTFSHIALLHNVMQNLSLQKTLPQQFSEQMFFACLSIFSTH 121 Query: 124 KELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKI 183 + + LLF I++V+ KV +I ++ W ++DI+ +Y SESL+K+KLQ+E FS+I Sbjct: 122 RGFMFLLFRCINSVALKVRYIICSSPSRAWRVKDISNSLYMSESLLKRKLQEEKVSFSQI 181 Query: 184 LLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPG 239 LL RM AR+L+ ++ ++ IA +CGY+ST YFI+ FR+Y+G+TPHQ + G Sbjct: 182 LLDIRMHNARQLI-SSKLSVNQIAIRCGYASTPYFISVFREYFGITPHQMMINQSG 236 >UniRef50_Q7NTA1 Putative uncharacterized protein n=1 Tax=Chromobacterium violaceum RepID=Q7NTA1_CHRVO Length = 266 Score = 161 bits (408), Expect = 2e-38, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 105/246 (42%), Gaps = 24/246 (9%) Query: 4 VCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQ 63 VC L R + H ++I L + + L A C D ++ YL Sbjct: 29 VCMPALCR----VRHGGKRIRLGDREMSAGPSQLVLLPAGCELDI----VNLPGPGGYLA 80 Query: 64 NIRQLPRNLGLHSKDR---LLINQSP--------PMPLVTA---IFDSFNESGVNSPILS 109 ++ LP +L +DR LL+ Q P PL +A + DS + G +P + Sbjct: 81 DVVGLPPDLLDRFRDRHGPLLLRQRPGQELCPTMDGPLASAWTLLMDSLH--GNAAPEIR 138 Query: 110 NMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLI 169 L + + PLL +++ + +L+ D A W + A R+ S + Sbjct: 139 QHHAEGVLLALALAGQAGPLLREKTDSLTQGLRQLMMLDPAAPWSVETAARRLNLGASTL 198 Query: 170 KKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVT 229 +++L +E+ F IL RM +A + ++ + + IAE GY+S S F FRQ YG+T Sbjct: 199 RRRLAEEDAGFQAILEEVRMGLALQQVQDGRRSIAQIAEASGYASASRFAARFRQRYGLT 258 Query: 230 PHQFAQ 235 P + Sbjct: 259 PSALRR 264 >UniRef50_Q9EYV5 HTH-type transcriptional regulator gadX n=60 Tax=Bacteria RepID=GADX_ECO27 Length = 274 Score = 150 bits (380), Expect = 3e-35, Method: Composition-based stats. Identities = 60/227 (26%), Positives = 107/227 (47%), Gaps = 15/227 (6%) Query: 17 YHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRNLGLHS 76 Y + + S + ++K + + + T+ +L +++ L H Sbjct: 28 YFNGGDLVFADASQIQVDKCVENFVL----------VSRDTLSLFLPMLKEEALKLHAHK 77 Query: 77 K-DRLLINQ-SPPMPLVTAIFDSFNESGV--NSPILSNMLYLSCLSMFSHKKELIPLLFN 132 K LL++ + +P+ + + + L + LS+F + IPLL N Sbjct: 78 KVPSLLVHHCTRDIPVFQEVAQLSQNKNLRYAEMLRKRALIFALLSVFLEDTQFIPLLLN 137 Query: 133 SIST-VSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSM 191 + + +V +I+ +IA W L IA + S SL+KKKL++E T +S++L RM Sbjct: 138 VLQPNMRTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKLREEGTSYSQLLTECRMQR 197 Query: 192 ARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSP 238 A +L+ + + + +A CGY S SYFI FR YYG+TP ++ + S Sbjct: 198 ALQLIVIYGVSIKRVAVSCGYHSVSYFIYVFRNYYGMTPTEYQERSA 244 >UniRef50_B7LQH5 HTH-type transcriptional regulator gadX for glutamic acid decarboylase and transporter (GadA, gad BC) (AraC/XylS family) (Modular protein) n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LQH5_ESCF3 Length = 289 Score = 148 bits (374), Expect = 1e-34, Method: Composition-based stats. Identities = 59/242 (24%), Positives = 111/242 (45%), Gaps = 13/242 (5%) Query: 4 VCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLD-IDELTVCHYL 62 +CS I + +++ KI++ +++ ++ + + I + T+ + Sbjct: 26 ICS---INETILTFNDGNKITIAPGNLIFVDP--RQLTITHYGELENVALITQKTISLLV 80 Query: 63 QNIRQLPRNLGLHSKDRLLI-NQSPPMPLVTAIFDSFNESGVN--SPILSNMLYLSCLSM 119 + + + I + P + + + ++S ++ + L L+ +S+ Sbjct: 81 SALNSDSLIHSYKAHNSPFIIRKCPDIAIFKYAANLSHKSDLSCAEKLRKRSLMLALMSL 140 Query: 120 FSHKKELIPLLFN-SISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENT 178 F + IPLL ++ +V +I+ +IA W L IA + S SL+KKKLQ E T Sbjct: 141 FLDDQNFIPLLMRILHPDITTRVCAVINSNIANDWSLTLIASELLMSPSLLKKKLQAEQT 200 Query: 179 CFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF---AQ 235 +S++L RM A +LL + A CGY S SYFI FR+++G+TP ++ Q Sbjct: 201 TYSQLLTECRMQQALKLLRCDDYAVKKTAILCGYKSVSYFIAVFRKHFGITPTEYQDKRQ 260 Query: 236 HS 237 H Sbjct: 261 HH 262 >UniRef50_Q65QI0 AraC protein n=1 Tax=Mannheimia succiniciproducens MBEL55E RepID=Q65QI0_MANSM Length = 284 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 50/227 (22%), Positives = 100/227 (44%), Gaps = 30/227 (13%) Query: 12 RSFDIYHE-QQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPR 70 ++FD+ + K+ + + LE+ + D+FA D V Y+Q + ++ Sbjct: 67 QTFDVLNNPDAKLGFYQAGWIALEQRVVDEFA-----------DLFGVETYVQELAKIQ- 114 Query: 71 NLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSH-KKELIPL 129 P+ + A FD ++ N +L L + + K E + Sbjct: 115 ----------------PLAPLKAHFDVVRQALENDEAPELVLKLKLFELLAWLKAEHLSF 158 Query: 130 LFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRM 189 + + + ++ ++I+ + A W IA +++ SE+ +++ LQ +T F ++L RM Sbjct: 159 VPHEKHNLLRQIRKMIASNTAFEWTAETIARQLHLSETSLRRALQKSDTTFREVLTDVRM 218 Query: 190 SMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 S A LL++ + + IA + GY S S F F+Q +G P ++ Sbjct: 219 SRALTLLQITKWQVARIANEVGYDSPSRFTVRFKQRFGFLPSDIREN 265 >UniRef50_P33234 HTH-type transcriptional regulator adiY n=102 Tax=Enterobacteriaceae RepID=ADIY_ECOLI Length = 253 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 71/247 (28%), Positives = 116/247 (46%), Gaps = 11/247 (4%) Query: 5 CSVILIRRSFDIYHEQQK-ISLHNESILLL--EKNLADDFAFCSPDTRRLDIDELTVCHY 61 C V+L + I ++ ISL + LL E N+ D + + T I + Y Sbjct: 9 CIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNN--TLVAHISHDIIKDY 66 Query: 62 L----QNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCL 117 L +++ Q+P + L +P + V A + + L + L Sbjct: 67 LRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVL 126 Query: 118 SMFSHKKELIPLLFNSIST-VSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE 176 S F K+ + L+ + VS V ++I DI K W L +A + S SL+KKKL+ E Sbjct: 127 SRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSE 186 Query: 177 NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF-AQ 235 NT +S+I+ RM A L + + +++ CGY+STSYFI+ F+ +YG+TP + +Q Sbjct: 187 NTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQ 246 Query: 236 HSPGTFS 242 H T + Sbjct: 247 HRERTVA 253 >UniRef50_C5BFY6 Transcriptional regulator, AraC family protein n=2 Tax=Edwardsiella RepID=C5BFY6_EDWI9 Length = 266 Score = 141 bits (357), Expect = 1e-32, Method: Composition-based stats. Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 2/152 (1%) Query: 86 PPMPLVTAIFDSFNES--GVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVER 143 P P +T ++D+ ++ +P L N L S L LL ++ ++++ Sbjct: 111 PMTPALTLLWDTMMDALRAPLAPPLLNHLAESLLLALQPSGHTALLLNERHDRLTEQIQQ 170 Query: 144 LISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPL 203 L+ D A W DIA+R++ +ES ++++L E F IL R+ A L+ P+ Sbjct: 171 LLLLDPAYAWQATDIAQRLHMAESTLRRRLNAEGKRFRDILDDVRLGQALLALQSGNTPI 230 Query: 204 HTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 IA + GY+S S F F + YG+TP Q Sbjct: 231 GDIASQSGYASPSRFTARFVRRYGLTPSALRQ 262 >UniRef50_D0YX71 Transcriptional regulator AraC family protein n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0YX71_LISDA Length = 321 Score = 140 bits (352), Expect = 6e-32, Method: Composition-based stats. Identities = 49/237 (20%), Positives = 106/237 (44%), Gaps = 14/237 (5%) Query: 15 DIYHEQQKISLHNESILLLEK------NLADDFAFCSPDTRRLDIDELTVCHYLQNIRQL 68 D+ Q +++ + + L++ K + + + + L + E T+ + + L Sbjct: 62 DVCINGQSVTISSNATLVIPKFSHISCTINQKDCHKNIELQLLMVGEETIAQSFKYMASL 121 Query: 69 --PRNLGLHSKDRLLINQSPPMP-----LVTAIFDSFNESGVNSPILSNMLYLSCLSMFS 121 P + +N++P + L + ++ + L+ L+ L++ Sbjct: 122 KQPNTPTANCMPVYHLNETPDVVEQNFQLFQQSLPAVADTRLEKTFLTQSLFFILLALNE 181 Query: 122 HKKELIPLL-FNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCF 180 ++ + FN + RLI+ D ++W + D+A+ ++T++S +++ L E F Sbjct: 182 AGIDVFNVYRFNYDEPKERTIARLITQDPQRKWSVDDMAKALFTTQSTLRRHLAKEGVSF 241 Query: 181 SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 S++LL RM +A L + I + G+ S +YF + F++ YG+TP QF S Sbjct: 242 SQLLLDVRMGLALNYLTFSNYSISQIGHRSGFGSAAYFCDAFKRKYGITPSQFRATS 298 >UniRef50_Q03Q27 Transcriptional regulator, AraC family n=1 Tax=Lactobacillus brevis ATCC 367 RepID=Q03Q27_LACBA Length = 362 Score = 138 bits (349), Expect = 1e-31, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 104/232 (44%), Gaps = 34/232 (14%) Query: 37 LADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRNLGLH----------SKDRLLINQSP 86 L DDF + + ++ +LT Y + + RN+ + SK RL +++S Sbjct: 39 LKDDFVYINHSAIEDNLAQLTFSDYA--VFPVSRNIQMWGAILCESVNVSKKRLFLSRSY 96 Query: 87 PMPLVTAIFD--SFNESGVNSPILSNMLYL--SCLSMFSHKKELIPLLF----------- 131 L+T IFD + + V P+ S+ + + ++F + PL Sbjct: 97 LENLMTQIFDEDTLGKVSVWEPLTSDQVGQINNLHALFHPTGDTDPLQAVLAPNAVIAGH 156 Query: 132 -----NSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILL 185 + ++S + I +I + L ++A+R Y S S + + + + F + + Sbjct: 157 TIDNDEAFRSISLAI-DYIQKNIQRPISLNEVAQRAYLSPSYLSRLFKKYLHVNFIEYVN 215 Query: 186 ASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 ++++A+ L L P++ I+ + G++ TSYF F++ G+TP +F Q + Sbjct: 216 NQKIALAQEKLSLTLTPINQISNQIGFTQTSYFTKIFKKKTGITPSEFRQRN 267 >UniRef50_A9MGM0 Putative uncharacterized protein n=1 Tax=Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- RepID=A9MGM0_SALAR Length = 296 Score = 138 bits (348), Expect = 1e-31, Method: Composition-based stats. Identities = 56/247 (22%), Positives = 105/247 (42%), Gaps = 24/247 (9%) Query: 12 RSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVC------------ 59 R F I + ++ + ++K++ + V Sbjct: 39 RPFYISFSGDILKINKGQAIFIKKSVPFSVLLNWGKMENGLVRNDIVSLKIPQQAIIEYN 98 Query: 60 -HYLQNIRQLPRNLGLHSKDRLLIN----QSPPMPLVTAIFDSFNESGVNSPILSNM--- 111 HY+ + PR S D ++IN Q+ L+ A+ +SF + + ++ Sbjct: 99 RHYIYKDQNEPR--AWASNDYIIINFSHEQTKDYTLINALIESFPVTATGEILYDHVDEA 156 Query: 112 LYLSCLSMFSHKKELIPLLFNSISTV--SGKVERLISFDIAKRWYLRDIAERMYTSESLI 169 Y+ LS+ K + + S S++ S KV LI D +K W +D+A +M S S Sbjct: 157 KYMLILSLIKQKNAALEDMILSYSSLTTSEKVASLIMSDYSKNWQSKDLAMQMNMSVSTF 216 Query: 170 KKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVT 229 KKK+ + S + +M A R L P+++IA GY+S+SYF + F++++ + Sbjct: 217 KKKMYKDTGSVSSYITKIKMIEALRQLRRTNRPINSIAISLGYTSSSYFTSVFKKHFKIF 276 Query: 230 PHQFAQH 236 P + ++ Sbjct: 277 PSEVRKN 283 >UniRef50_Q2BYZ8 Transcriptional regulator, AraC family protein n=6 Tax=Vibrionaceae RepID=Q2BYZ8_9GAMM Length = 293 Score = 137 bits (346), Expect = 3e-31, Method: Composition-based stats. Identities = 53/236 (22%), Positives = 103/236 (43%), Gaps = 13/236 (5%) Query: 15 DIYHEQQKISLHNESILLLEK------NLADDFAFCSPDTRRLDIDELTVC---HYLQNI 65 D++ I L N S ++ K ++ + + + L IDE ++ Y+ + Sbjct: 33 DVHINGHAIELKNNSTFVVPKFSHISCSINQLNNQENIELQLLMIDEESITEAFKYISAL 92 Query: 66 RQLPRNLGLHSKDRLLINQ---SPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSH 122 +Q S + L + S S + +LS L +++ Sbjct: 93 KQPTFPTASCSPVYTIPTPAIVDQNFVLFNKLLPSICGSSMEKTLLSQCLVFILMALNEA 152 Query: 123 KKELIPLL-FNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFS 181 ++ + FN + RLI+ D ++W + D+A+ ++T++S +++ L E FS Sbjct: 153 GIDVFNVYRFNYDEPKERTIARLITQDPQRKWSVDDMAKALFTTQSTLRRHLAKEGVSFS 212 Query: 182 KILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 ++LL RM +A L + I+ + G+ S +YF + F++ YG+TP QF S Sbjct: 213 QLLLDVRMGLALNYLTFSNYSISQISNRSGFGSAAYFCDAFKRKYGITPSQFRTTS 268 >UniRef50_B8FMW7 Transcriptional regulator, AraC family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FMW7_DESAA Length = 342 Score = 137 bits (345), Expect = 3e-31, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 71/158 (44%), Gaps = 6/158 (3%) Query: 82 INQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKEL--IPLLFNSISTVSG 139 I Q P + ++++ +N+P+ + L+ +H+KE + L T S Sbjct: 189 IFQCPIVFNAPRHMFVWDKTNLNTPLP----LANPLAKKAHEKECRELSLRIRKQETASS 244 Query: 140 KVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELR 199 ++ + I F D+A M S ++++L++E T F I+ + A LL+ Sbjct: 245 RIVQEIEFRRQGVPGFDDLARHMNMSPRTLRRRLKEEGTSFKNIVSDVQKEKAIHLLQTT 304 Query: 200 QIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 +P+ IA + GY F F+++ G TP + Q + Sbjct: 305 NLPIQQIALELGYEDLPNFYRAFKRWTGKTPGDYRQSN 342 >UniRef50_C4GLE7 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GLE7_9NEIS Length = 264 Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 91/226 (40%), Gaps = 28/226 (12%) Query: 12 RSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRN 71 +SFD+ +E + L+L F P LD+ + Sbjct: 67 QSFDVLNEPDAAQGYRSEWLMLGDEWVAQFFAQHPSRETLDLARVL-------------- 112 Query: 72 LGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLF 131 + D + +V + E+ + + + + +L+ Sbjct: 113 RPDAAWDEAFLR------VVQGVQTRLPETVLAARTMELLAWLAQAGAV--------FNP 158 Query: 132 NSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSM 191 +S +S ++ +LI+ D+A W + D+A+R+ SE+ ++++L +E F ++L +M Sbjct: 159 HSAQRLSKQIRQLIAQDMAASWQIADVAQRLGMSEATLRRRLANEGASFRELLGNIKMMR 218 Query: 192 ARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 A LL+ + + +A GY S + F FR ++G TP + + Sbjct: 219 ALTLLQTSPLGVAQVAYAVGYESPARFAAKFRAHFGCTPSDVRKAA 264 >UniRef50_B5FRI8 AraC family regulatory protein n=32 Tax=Enterobacteriaceae RepID=B5FRI8_SALDC Length = 291 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 52/174 (29%), Positives = 88/174 (50%), Gaps = 1/174 (0%) Query: 61 YLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMF 120 +L L + LL + V + S N+S S L LS F Sbjct: 105 FLYEHADFSDPLTKPTTKHLLAPIETGVARVFNLLHSSNKSQKLSQDKKEYLIRFLLSEF 164 Query: 121 SHKKELIPLLFN-SISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTC 179 ++ E L S +T++ + +I DI+++W L+DI++ +Y S S +K+KL+ E+T Sbjct: 165 IYEPEAFALFRELSQNTLAENIYNIIISDISRKWALKDISDSLYMSCSTLKRKLKQEHTS 224 Query: 180 FSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 FS++ L +RM+ A +LL + + +A CGY S SYF F++++ TP +F Sbjct: 225 FSEVYLNARMNKATKLLRNSEYNITRVAYMCGYDSASYFTCVFKKHFKTTPSEF 278 >UniRef50_A6AXU3 Transcriptional regulator, AraC family protein n=3 Tax=Vibrio parahaemolyticus RepID=A6AXU3_VIBPA Length = 238 Score = 134 bits (338), Expect = 2e-30, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 74/140 (52%) Query: 99 NESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDI 158 ++ L ++ + + ++ S S++S ++ LIS D+ K W L++I Sbjct: 95 GCGNRSNDELLDINSMLLYLLMHFEQSASQAETRSYSSLSSRIRALISKDLTKPWTLKEI 154 Query: 159 AERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYF 218 A+ +Y SES +K+KL E T F+ +L A+R+ A++++ + IAE CG+ SYF Sbjct: 155 AKLVYMSESTVKRKLNKEGTTFTDVLQAARLDTAQKMVCNSDASVSAIAELCGFKHASYF 214 Query: 219 INTFRQYYGVTPHQFAQHSP 238 FR+ YG TP + + + Sbjct: 215 GACFRKEYGATPLAYRKQAQ 234 >UniRef50_A6X415 Helix-turn-helix-domain containing protein AraC type n=1 Tax=Ochrobactrum anthropi ATCC 49188 RepID=A6X415_OCHA4 Length = 339 Score = 134 bits (337), Expect = 3e-30, Method: Composition-based stats. Identities = 52/241 (21%), Positives = 100/241 (41%), Gaps = 25/241 (10%) Query: 13 SFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRNL 72 I + ++L ++ L + A ++ P+ R+D L V Y +Q +N Sbjct: 96 PLRIRQSGETLNLLPGDVVFLSPDKAYEWWL--PEGGRVDCGRLPVS-YFPVSKQAVKNF 152 Query: 73 GLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFN 132 + R + PP+ L+ G ++P + M+ +H ++++P++ Sbjct: 153 LM----RPIPKAYPPLKLLITHGAYLLMRGAHAPGEAEMIA-------AHFRQVLPMVLE 201 Query: 133 SISTVSGK---------VERLISFDIAKR-WYLRDIAERMYTSESLIKKKLQDENTCFSK 182 + K ++ I ++ + L + R + ++K Q ENT FS+ Sbjct: 202 FLRDDHRKHRSGRNLSQIKAFIETGLSDATFDLGTVTARFGVTARQVQKLFQAENTTFSR 261 Query: 183 ILLASRMSMAR-RLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGTF 241 +L R+ MAR R+ + +IA + G+ SYF FRQ++G+TP S Sbjct: 262 YVLERRLDMARLRVSRQNNRSISSIAYEVGFGDLSYFNRVFRQHFGMTPSAMRDQSHAMV 321 Query: 242 S 242 S Sbjct: 322 S 322 >UniRef50_C4T4E3 AraC-type DNA-binding domain-containing protein n=3 Tax=Yersinia RepID=C4T4E3_YERIN Length = 269 Score = 133 bits (335), Expect = 6e-30, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 65/138 (47%) Query: 98 FNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRD 157 N G L + L + LL + + +V++++ D A+ W + D Sbjct: 127 LNVKGHAPDALLQHAAMGVLLALYLAGQAGVLLIDRRDKWAEQVQQVLLLDPARNWSVSD 186 Query: 158 IAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSY 217 +A ++ +S +++KL E+ F IL RM A L+ + + IA + GY S S Sbjct: 187 VARSLHIGDSTLRRKLMQEDRSFRMILEEVRMGCALHALQTTSLSIGEIAAQHGYISPSR 246 Query: 218 FINTFRQYYGVTPHQFAQ 235 F + F+Q++G+TP + + Sbjct: 247 FTSRFQQHFGLTPRRLRE 264 >UniRef50_Q2SCQ2 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SCQ2_HAHCH Length = 276 Score = 133 bits (334), Expect = 6e-30, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 93/229 (40%), Gaps = 6/229 (2%) Query: 7 VILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIR 66 +I++ R + Q +++ + +L + F V + + Sbjct: 42 LIIVLRGAKVLSLQPELACRSGEFILAPAGIELQFMNLPEGEYIA-----VVIGFCASDL 96 Query: 67 QLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKEL 126 + +D I + L + N V+ P L + + + Sbjct: 97 EAIPVSAPPDRDGAAIAR-VDRTLAEFLNQWINWIDVSPPELWALRRKELAHLLYARGYG 155 Query: 127 IPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLA 186 L S ++ KV ++ + AK W L +I+ + SES ++++LQ EN F +L + Sbjct: 156 SLLKSRSGASWRRKVSEVLMQEPAKDWSLLEISRLLAVSESTLRRRLQSENAGFRDLLES 215 Query: 187 SRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 R+ + L + +P+ IA++CGY S S F F+Q +G+TP + Q Sbjct: 216 VRLGIGLHLAQTTLLPIAHIADQCGYQSQSRFTERFKQRFGMTPSELRQ 264 >UniRef50_P32326 Urease operon transcriptional activator n=12 Tax=Gammaproteobacteria RepID=URER_ECOLX Length = 296 Score = 132 bits (332), Expect = 1e-29, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 73/139 (52%), Gaps = 1/139 (0%) Query: 100 ESGVNSPILSNMLYLSCLSMFSHKKELIPLL-FNSISTVSGKVERLISFDIAKRWYLRDI 158 + + ++ LY ++++ +++ L FN + + LI+ + K+W+L D+ Sbjct: 131 SASQEALLMKQSLYFILMAIYQEGIDILNLFRFNYDEPKNQAITHLITQEPQKKWHLDDV 190 Query: 159 AERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYF 218 A+ ++T+ S +++ L E F ++LL RM MA L + I+ +CG+ S +YF Sbjct: 191 AKALFTTPSTLRRHLNREGVSFRQLLLDVRMGMALNYLTFSNYSVFQISHRCGFGSNAYF 250 Query: 219 INTFRQYYGVTPHQFAQHS 237 + F++ Y +TP QF S Sbjct: 251 CDVFKRKYNMTPSQFRLQS 269 >UniRef50_A0Z3Z2 Transcriptional regulator, AraC family protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z3Z2_9GAMM Length = 343 Score = 132 bits (332), Expect = 1e-29, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 6/121 (4%) Query: 128 PLLFNSIST-----VSGKVERLISFDIAKRWYLRD-IAERMYTSESLIKKKLQDENTCFS 181 P+L N + + ++GKV + + K + IA+ ++ S ++++L+ ENT + Sbjct: 218 PMLDNLLKSLRTGDIAGKVRWQLLDALDKELPSEEAIAQALHMSPRTLQRRLKAENTSYG 277 Query: 182 KILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGTF 241 +++ +RM +A++LL I + CG+S S F F+++ G TP + P T Sbjct: 278 EVVQQTRMQLAQQLLASPDISATEVGLACGFSDASAFTRAFKRWTGTTPSDYRSGMPNTD 337 Query: 242 S 242 S Sbjct: 338 S 338 >UniRef50_B5ZYE2 Transcriptional regulator, AraC family n=12 Tax=Rhizobium RepID=B5ZYE2_RHILW Length = 284 Score = 132 bits (332), Expect = 1e-29, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 87/225 (38%), Gaps = 3/225 (1%) Query: 16 IYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRNLGLH 75 I + + L + LL R L V L R + Sbjct: 42 IMANDRPLRLEAGAYGLLPDYQPLTMENIPKAPRNYQTVALPVPRQLFEDA-YARMGSIA 100 Query: 76 SKDRLLINQSPPMPLVTA-IFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSI 134 R L + +P A +FD + G + + + + + + +L Sbjct: 101 VPSRPLPASASSLPEEAAVLFDYCCQPGNLARLPGAIAKARLMELVTWFALCGAVLGEGQ 160 Query: 135 ST-VSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMAR 193 S + ++ ++I D A W L A SE+ ++++L ENT FS+IL +RM+ A Sbjct: 161 SPRLEDRLRQMIESDPAFDWTLAHAARSFNMSEATLRRRLAAENTGFSEILSDTRMNRAL 220 Query: 194 RLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSP 238 L+ +P+ +A + GY S S F F++ +GV+P S Sbjct: 221 GLIHTTTLPMAQVALEVGYDSPSQFSARFKERFGVSPRHVRSGSE 265 >UniRef50_A3JHC0 Transcriptional regulator, AraC family protein n=2 Tax=Gammaproteobacteria RepID=A3JHC0_9ALTE Length = 342 Score = 131 bits (331), Expect = 1e-29, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 48/98 (48%) Query: 137 VSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLL 196 +S +V + L D+A R+ S + +KL+ E T + +L R +A L Sbjct: 240 LSQQVSNCLLNSPDGYPSLDDVASRLAMSRRTLIRKLKTEGTSYQDLLDGVRQELAAWYL 299 Query: 197 ELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFA 234 + + IAE+ GY TS F TFR+++G+TPH Sbjct: 300 LETTVAVEQIAERLGYQDTSNFSRTFRRWFGMTPHAMR 337 >UniRef50_A4XWL1 Transcriptional regulator, AraC family n=5 Tax=Bacteria RepID=A4XWL1_PSEMY Length = 364 Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 65/139 (46%), Gaps = 2/139 (1%) Query: 98 FNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRD 157 F+ + P+L + L H + + ++ ++ RL+ D L Sbjct: 226 FHARYLAMPLLQDERTLK--QFLEHSPADLLARPDGGDSLISQIRRLLGRDCRTWPDLEQ 283 Query: 158 IAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSY 217 +A++++TS +++ L++E T F ++ R +A L ++ +H IAE+ G+S S Sbjct: 284 VAQQLHTSPQTLRRHLREEGTSFQELKDHLRRDLAIYHLGRDELAIHDIAEQLGFSEPSA 343 Query: 218 FINTFRQYYGVTPHQFAQH 236 F F+++ G+TP + Sbjct: 344 FHRAFKKWTGLTPGAYRAQ 362 >UniRef50_A7XY51 LngS n=3 Tax=Enterobacteriaceae RepID=A7XY51_ECOLX Length = 298 Score = 130 bits (328), Expect = 3e-29, Method: Composition-based stats. Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 1/137 (0%) Query: 100 ESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSIS-TVSGKVERLISFDIAKRWYLRDI 158 ++ L LS F H ++ S +V KV L+ + K+W L D+ Sbjct: 158 FENEEKENIATYALLLLLSGFIHDTAFAGIISRSAKLSVKYKVYNLLYTEPDKQWKLDDV 217 Query: 159 AERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYF 218 + ++ S S +K+KL E T FS++ + +RM++A +LL + + +A CGY S SYF Sbjct: 218 SSAIFMSASTLKRKLATEGTTFSELYITARMNLASKLLRTGKYSVTNVAVLCGYDSVSYF 277 Query: 219 INTFRQYYGVTPHQFAQ 235 I F++ + +TP F + Sbjct: 278 IACFKRQFNITPSAFMK 294 >UniRef50_P41782 Transcriptional regulator hilD n=38 Tax=Salmonella enterica RepID=HILD_SALTY Length = 309 Score = 130 bits (328), Expect = 3e-29, Method: Composition-based stats. Identities = 41/107 (38%), Positives = 69/107 (64%) Query: 129 LLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASR 188 +L ++ T+ +V +IS +++W L D+A+ ++ S S +K+KL +E T FS I L++R Sbjct: 199 ILSSAQITLKERVYNIISSSPSRQWKLTDVADHIFMSTSTLKRKLAEEGTSFSDIYLSAR 258 Query: 189 MSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 M+ A +LL + ++ +A KCGY STSYFI F++Y+ TP F + Sbjct: 259 MNQAAKLLRIGNHNVNAVALKCGYDSTSYFIQCFKKYFKTTPSTFIK 305 >UniRef50_B8KKU1 Transcriptional regulator OruR n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KKU1_9GAMM Length = 348 Score = 130 bits (327), Expect = 4e-29, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 61/114 (53%), Gaps = 2/114 (1%) Query: 123 KKELIPLL--FNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCF 180 +++ LL ++ +G+V RL++ + D A ++ SE ++++L +E T + Sbjct: 224 EQQCAALLGQMQAVQGFTGQVRRLLANAPGHHPSIEDAAGKLAMSERSLRRRLSEEGTTY 283 Query: 181 SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFA 234 +++L RM +A L R++ + +A GY+ S F TF +YYG TP +F Sbjct: 284 KEVVLDFRMELASSYLRGREMTIQEVAFLAGYADASNFHRTFSRYYGATPGEFR 337 >UniRef50_C6LLK3 Putative two-component response regulator n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LLK3_9FIRM Length = 531 Score = 130 bits (327), Expect = 4e-29, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 56/132 (42%), Gaps = 1/132 (0%) Query: 109 SNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESL 168 ++ M + + ++ K + + ++ L D+++ + S Sbjct: 400 EDIRTWFLEKMMQTCCSIRDKNEDRSESLVEKARSYMQENYSREISLDDVSKEVNVSPYY 459 Query: 169 IKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYG 227 K ++E F++ L R+ A+ LLE ++ + I GY+ +YF F+++ G Sbjct: 460 FSKIFKEESGENFTEYLTNIRIGKAKELLENPELSIKEIGVMSGYTDPNYFSRIFKKHTG 519 Query: 228 VTPHQFAQHSPG 239 +TP ++ + G Sbjct: 520 ITPREYRERYYG 531 >UniRef50_B5JUK1 AraC-type DNA-binding domain-containing protein n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JUK1_9GAMM Length = 332 Score = 130 bits (326), Expect = 6e-29, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 69/164 (42%), Gaps = 11/164 (6%) Query: 85 SPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNS----------I 134 P AIF++ L L + ++ L+ L S Sbjct: 167 PPHQSAYKAIFNTELHFDQAVTQLEFPAKFLELPVAQSERTLVEFLRESPADLLARPAKD 226 Query: 135 STVSGKVERLISFDIAKRW-YLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMAR 193 + +G++ LI +DI +AE++ S ++++L++E T + ++ R +A Sbjct: 227 ESYAGRIRALIGYDIECDLPAFESVAEQLGLSPQTLRRRLKEEGTSYQELKDLIRRDIAL 286 Query: 194 RLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 L Q +H IA+K G++ S F F+++ G+TP + Q Sbjct: 287 HFLNKPQYSIHEIAQKVGFAEPSAFHRAFKKWVGLTPSDYRQTH 330 >UniRef50_A6GTF7 Putative transcriptional regulator n=1 Tax=Limnobacter sp. MED105 RepID=A6GTF7_9BURK Length = 340 Score = 129 bits (325), Expect = 6e-29, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 61/171 (35%), Gaps = 3/171 (1%) Query: 69 PRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIP 128 P + + + I Q + + + VNSP L+ L +L Sbjct: 173 PFDAPAWAHEYQRIAQHNSFG-FSQLRVVLGSTLVNSPSLAADDE--ALQRLLRDCDLQL 229 Query: 129 LLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASR 188 + T++ +V + L+ +A + +E + LQ E T F ++L R Sbjct: 230 QRLQAGGTLAQRVRMQLQQSEGHMPTLQAMAAKENLTERTFMRHLQAEGTSFQQLLDEVR 289 Query: 189 MSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPG 239 A +L + IA GY S F TF+++ G TP + Sbjct: 290 QERACWMLAHTDSTVEAIAYALGYEDASNFSRTFKRWCGQTPKDYRHQHAS 340 >UniRef50_B5JTW9 Helix-turn-helix-domain containing protein, AraC type n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JTW9_9GAMM Length = 350 Score = 129 bits (325), Expect = 7e-29, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 56/121 (46%) Query: 116 CLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD 175 +S + E + N + V+G V I + L +AE+++ S +K++LQ Sbjct: 226 LVSAAQEQMEAELVRLNVRNDVAGMVRLQIQDWEGRLPTLEQVAEQLHMSPRTLKRRLQT 285 Query: 176 ENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 T + +I +SR A LE L +IAE GYS S F F+ + +TP +F Q Sbjct: 286 AGTSYQQIKDSSRFRRAIHQLEATDSSLESIAELLGYSDASNFTKAFKSWAEMTPSEFRQ 345 Query: 236 H 236 Sbjct: 346 R 346 >UniRef50_A6T768 Bacterial regulatory protein, AraC family n=48 Tax=Enterobacteriaceae RepID=A6T768_KLEP7 Length = 262 Score = 128 bits (323), Expect = 1e-28, Method: Composition-based stats. Identities = 54/236 (22%), Positives = 90/236 (38%), Gaps = 11/236 (4%) Query: 6 SVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNI 65 S L R + + I +L + L A + + L L Sbjct: 31 SPALCR----VKRGSKVIVQGESRVLATPQQLIVLPADVELEVINQPENGLFCSDLLSLT 86 Query: 66 RQL-----PRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVN--SPILSNMLYLSCLS 118 +L R L RL +P + ++ S ++ S L + L Sbjct: 87 PELLTRFKTRYLSEPPPGRLTSLCAPVTTELAFMWQSVLQAVREGLSVALQQHQTMGLLL 146 Query: 119 MFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENT 178 PLL +S +V +LI A+ W + +A+ ++ ES ++++LQ E+ Sbjct: 147 ALYEAGYAGPLLVERQQDLSAQVRQLIMLSPAQAWSVSRVAKMLFLGESTLRRRLQQESQ 206 Query: 179 CFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFA 234 F +I+ RM+ A L+ P+ IA+ GY S S F FRQ+YG+ P Sbjct: 207 SFRQIVEEVRMAHALGQLQTTSRPIGEIAQNSGYQSGSRFTARFRQHYGLLPKHVR 262 >UniRef50_A1TWU6 Transcriptional regulator, AraC family n=2 Tax=Marinobacter RepID=A1TWU6_MARAV Length = 347 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 50/106 (47%) Query: 131 FNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMS 190 + + +V R+I L +A +Y SE +K++LQ+E F ++ R+ Sbjct: 234 LKEDAGFACRVRRVIETSHPFPPKLARVASTLYVSERTLKRRLQEEEASFQALVDQVRLE 293 Query: 191 MARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 AR LL + L IA+ GY+ + F F+++ G++P F Sbjct: 294 RARDLLASTTMNLSQIADSLGYADAANFTRAFKRWTGLSPSHFRNR 339 >UniRef50_A4TK67 Transcriptional regulator, AraC family n=35 Tax=Enterobacteriaceae RepID=A4TK67_YERPP Length = 291 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 2/145 (1%) Query: 93 AIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKR 152 IF+S +E+ ++ L L + + + + N + +S KV R ++ D K Sbjct: 126 NIFNSISENSDIPTVIIKHRMLELLLWLAQRD--VKFILNDGNGLSEKVRRCLASDPHKI 183 Query: 153 WYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGY 212 W ++AE M SE ++++KL EN +++ RM+ A RLL+ P+ IA + GY Sbjct: 184 WSASEVAEHMTMSEVVLRRKLAAENILLRDLMIDVRMTSALRLLQGTDWPISLIANQIGY 243 Query: 213 SSTSYFINTFRQYYGVTPHQFAQHS 237 S+S F FR+ +G P H Sbjct: 244 ESSSRFAERFRKRFGFAPTAIRGHH 268 >UniRef50_C6D5X4 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D5X4_PAESJ Length = 533 Score = 128 bits (321), Expect = 2e-28, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 57/121 (47%), Gaps = 4/121 (3%) Query: 115 SCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQ 174 S + ++E +P+ + + + +S ++ KR L ++A ++ + S + + Sbjct: 415 QLQSYIAAREEALPVSKRREVS---EARKYVSMNLGKRISLEEVAAHLHMNPSYFSRFFK 471 Query: 175 DE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 E F + + ++ A+ LL+ + I E GY + SYFI TF+ G+TP ++ Sbjct: 472 KETGLTFIEYVTDQKIERAKELLDQTNYYVSEICEMLGYDNQSYFIKTFKAQTGLTPTEY 531 Query: 234 A 234 Sbjct: 532 R 532 >UniRef50_Q0VN05 Transcriptional regulator, AraC family n=2 Tax=Alcanivorax RepID=Q0VN05_ALCBS Length = 342 Score = 128 bits (321), Expect = 2e-28, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 53/122 (43%) Query: 115 SCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQ 174 + ++ + E ++ ++ + A L+ +AER+ S +K+ LQ Sbjct: 220 AAIARQQCEMEFRQWRTEDEGVMARRIRSALQDHPAPLPSLQGMAERLAVSARTLKRHLQ 279 Query: 175 DENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFA 234 + ++ R ARRLL + + +A + GY+ + F F+++ G+TP + Sbjct: 280 QAGLSYRQLQDEERYQQARRLLVQSENSISEVAYRLGYNDVANFSKAFKRWSGMTPSAYR 339 Query: 235 QH 236 + Sbjct: 340 EK 341 >UniRef50_C6JEP4 Two component transcriptional regulator n=3 Tax=Clostridiales RepID=C6JEP4_9FIRM Length = 531 Score = 128 bits (321), Expect = 2e-28, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 1/103 (0%) Query: 135 STVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMAR 193 ++ + + I+ + + L D++ + S K + E F + L R+ AR Sbjct: 427 GSIIDRAKEYINENFRRDISLDDVSREVDISPYYFSKLFKQETGKNFIEYLTEIRLKNAR 486 Query: 194 RLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 LL+ ++ + I + GYS +YF F++Y GVTP +F + Sbjct: 487 ELLQDSRLSIKEICAQSGYSDPNYFSRIFKKYEGVTPSEFRER 529 >UniRef50_C6CUY4 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CUY4_PAESJ Length = 541 Score = 127 bits (319), Expect = 3e-28, Method: Composition-based stats. Identities = 38/150 (25%), Positives = 72/150 (48%), Gaps = 4/150 (2%) Query: 90 LVTAIFDSFNESGVNSPI--LSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISF 147 L I D F+ SPI + ++ + ++ S++K + +S S++ KV+ I Sbjct: 390 LSDMIGDDFHAFANGSPIHTVDDLRTWTARTIDSYRKSVNSEDKDSRSSIIRKVQEFIHN 449 Query: 148 DIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTI 206 + + L I+ +Y + S + K + E S+ LL +RM + LL ++ I Sbjct: 450 HLEQA-SLHSISTHVYLNPSYLSKIYKTETGEGISEYLLRARMEKSADLLAQTDEKIYEI 508 Query: 207 AEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 + GY SYFI F++++G+TP ++ Sbjct: 509 SVMLGYQKPSYFIQLFKKHFGITPQEYRNK 538 >UniRef50_Q2S8T9 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2S8T9_HAHCH Length = 278 Score = 127 bits (319), Expect = 3e-28, Method: Composition-based stats. Identities = 37/107 (34%), Positives = 57/107 (53%) Query: 129 LLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASR 188 N + + KV LI + K+W +DIAE + SE+ +++KL E FS+IL+ R Sbjct: 163 FRSNERADIQRKVRLLIGAEPDKKWSSQDIAESLALSEATLRRKLAKEGNAFSEILVDVR 222 Query: 189 MSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 MS+A LL+ + +IA + GY S S F F+Q +G +P Sbjct: 223 MSLALSLLQSTDAAIASIAYQVGYESASRFSVRFKQRFGFSPTAIRN 269 >UniRef50_Q0B4N6 Transcriptional regulator, AraC family n=16 Tax=Proteobacteria RepID=Q0B4N6_BURCM Length = 373 Score = 126 bits (318), Expect = 5e-28, Method: Composition-based stats. Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 9/132 (6%) Query: 104 NSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAK-RWYLRDIAERM 162 +P+ +M C+ + ++ + S V + ++ + L DIA M Sbjct: 237 ANPLTVSMCEQMCVQLVEARR--------ARVGTSEMVRQYLTATPGNVPFSLDDIARLM 288 Query: 163 YTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTF 222 TS +K++LQ+E T F +L +R +MA LL + L +AE+ G+S S F F Sbjct: 289 NTSPRTLKRRLQEEGTTFRTLLAQARGAMAETLLGDAHLSLTEVAERLGFSDLSSFSQAF 348 Query: 223 RQYYGVTPHQFA 234 +++YGV P + Sbjct: 349 KRWYGVPPGTYR 360 >UniRef50_A7ZGX7 Transcriptional regulator, AraC family n=1 Tax=Escherichia coli E24377A RepID=A7ZGX7_ECO24 Length = 209 Score = 126 bits (317), Expect = 6e-28, Method: Composition-based stats. Identities = 51/151 (33%), Positives = 84/151 (55%), Gaps = 3/151 (1%) Query: 90 LVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLF-NSISTVSGKVERLISFD 148 L+ + + +S +S ++YL +S ++I L+ +SI+ + KV +I D Sbjct: 60 LLDVLKEMKGHHNDDSSFISALIYL--ISKIKCNDKIIESLYMSSITFFTDKVRGVIEKD 117 Query: 149 IAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAE 208 ++++W L IA+ SE I+K+L+ E+T F++IL+ SRMS A LL + I+ Sbjct: 118 LSRKWTLAIIADVFNVSEITIRKRLESEDTNFNQILMQSRMSKAALLLLENSYQISQISN 177 Query: 209 KCGYSSTSYFINTFRQYYGVTPHQFAQHSPG 239 G SS SYFI F +++GVTP QF + G Sbjct: 178 MIGISSASYFIRIFNKHFGVTPKQFFNYFKG 208 >UniRef50_B5JU19 Transcriptional regulator, AraC family n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JU19_9GAMM Length = 335 Score = 126 bits (317), Expect = 6e-28, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 62/134 (46%), Gaps = 1/134 (0%) Query: 103 VNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERM 162 ++ P+L + ++ ++EL + +V R + + L ++A + Sbjct: 197 LDRPLLMANPSAAQQAVLFCERELEDYRQREEADWVRQVRRAMVKQEGGYYSLEEVAAVL 256 Query: 163 YTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTF 222 + S +K++L++ + +IL +R+ A LL+ + + T+A + GY + F F Sbjct: 257 HLSVRTLKRRLKEHGANYHRILKEARLERAVALLKEGE-TVQTVAFQLGYQDPANFTRAF 315 Query: 223 RQYYGVTPHQFAQH 236 R++ G +P + Q Sbjct: 316 RRWTGCSPSDYRQQ 329 >UniRef50_A0KMW4 Transcriptional regulator, AraC/XylS family n=2 Tax=Aeromonas RepID=A0KMW4_AERHH Length = 270 Score = 126 bits (316), Expect = 7e-28, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 87/228 (38%), Gaps = 15/228 (6%) Query: 20 QQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRNLGLHSKDR 79 +++++ S LL+ F + L + P ++ Sbjct: 43 EKRLAFDQASWLLIPAGHQLTFVNQPEQGK-------FRSRALTLLTPPPVEWLGATQAG 95 Query: 80 LLINQ----SPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSIS 135 L SP + + S + +N + +L + LLF + + Sbjct: 96 PLREPRLTVSPALAFCFELVCSMADRRLNEATQAQLL--QGFYAELQAAGGLDLLFPAHT 153 Query: 136 -TVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARR 194 T+ ++ R + + L +A S + + +KL E F ++L RMS A Sbjct: 154 MTLGERLARYLGVEPGADHTLEGVAPHFAMSRASMARKLAAEGRSFRQLLTQVRMSHALT 213 Query: 195 LLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGTFS 242 LL+ +PL A CGY S S F F+Q +G+TP+Q+ + P + + Sbjct: 214 LLQQGLVPL-ETALACGYDSPSRFAARFKQEFGLTPYQYLRTCPSSLA 260 >UniRef50_B9LZS6 Transcriptional regulator, AraC family n=1 Tax=Geobacter sp. FRC-32 RepID=B9LZS6_GEOSF Length = 324 Score = 126 bits (316), Expect = 8e-28, Method: Composition-based stats. Identities = 32/99 (32%), Positives = 54/99 (54%) Query: 137 VSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLL 196 +S VE ++ D+ +W L+ +A+ + SE +++KLQDE F K+L +R+ A L Sbjct: 219 LSDSVEAIVKQDLNHKWTLKSVAQSLNMSERSMQRKLQDEGQTFRKLLNNARIRTAESYL 278 Query: 197 ELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 Q+ L I G+S S+F F++Y G P Q+ + Sbjct: 279 LNSQLSLTEIGYLTGFSDYSHFSKEFKRYSGTNPSQYRK 317 >UniRef50_Q2SDH6 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SDH6_HAHCH Length = 351 Score = 126 bits (316), Expect = 8e-28, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 84/195 (43%), Gaps = 21/195 (10%) Query: 47 DTRRLDIDELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSP 106 ++ + + Q P G + ++ +P + +P Sbjct: 164 KEVEIEFEAPPYAQHYQQAFNCPVKFGRSRNALIFRKEALLLPSI-----------YANP 212 Query: 107 ILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDI-AKRWYLRDIAERMYTS 165 + + C +EL L+ ++++ +V+++I+ + + L + A+++ S Sbjct: 213 ATHSEIVSIC------NRELTTLV--GATSLTERVKQIITPMLQGREVGLTETAKQLGLS 264 Query: 166 ESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQY 225 E ++++L+ E F ++L +R +A L+ + + IA G+SS + F F+++ Sbjct: 265 EWTLQRRLKKEGVQFQQVLDETRKQIAETYLKATDLTIGEIAYLLGFSSPAAFHRAFKRW 324 Query: 226 YGVTPHQFA-QHSPG 239 +GV P F QH+ G Sbjct: 325 FGVNPKPFKDQHASG 339 >UniRef50_B1YT91 Transcriptional regulator, AraC family n=2 Tax=Burkholderiaceae RepID=B1YT91_BURA4 Length = 247 Score = 126 bits (316), Expect = 8e-28, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 59/133 (44%), Gaps = 8/133 (6%) Query: 102 GVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAER 161 G + + M+ C + + ++ +V L+ A + D+A Sbjct: 123 GTANAQTAQMIVQQCEAELAR--------LGYAESIVERVRNLLICGDAGYPSVDDVARE 174 Query: 162 MYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINT 221 ++ S +K+KL + +S +L R+ A RLLE ++P+ IA + GY+ + F Sbjct: 175 LHVSARTLKRKLAEFGATYSTLLDEIRLRDALRLLEGTRLPVDEIAARVGYTDRANFTRA 234 Query: 222 FRQYYGVTPHQFA 234 F+++ GV P + Sbjct: 235 FKRWTGVAPSERR 247 >UniRef50_Q8Z4A6 Transcriptional regulator sirC n=36 Tax=Salmonella enterica RepID=SIRC_SALTI Length = 295 Score = 126 bits (316), Expect = 8e-28, Method: Composition-based stats. Identities = 57/238 (23%), Positives = 100/238 (42%), Gaps = 15/238 (6%) Query: 10 IRRSFDIYHEQQKI---SLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIR 66 I F + EQ + L + + L + + S D+ + + Sbjct: 53 IENEFGEFIEQSALCLFLLEKDQTITLSMSEIEGHIDFSSLEVSYDLMQKFYKVFYSTRN 112 Query: 67 QLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNE----------SGVNSPILSNMLYLSC 116 R L L +K + + +P ++ FDS ++ S + Sbjct: 113 YNDRELSLKTKPKYFF-HADLLPGMSDTFDSILHGVACPRVCSNVSIDDHDYSYFSLMYL 171 Query: 117 LSMFSHKKELIPLLFNSIS-TVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD 175 +S F K L +I T KV +I D+ ++W ++A +++ S S +K+KL Sbjct: 172 ISAFVRKPGGFDFLERAIKITTKEKVYNIIISDLTRKWSQAEVAGKLFMSVSSLKRKLAA 231 Query: 176 ENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 E FSKI L +RM+ A +LL + + +A CGY + SYFI F++++ +TP F Sbjct: 232 EEVSFSKIYLDARMNQAIKLLRMGAGNISQVATMCGYDTPSYFIAIFKRHFKITPLSF 289 >UniRef50_UPI000178AA55 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178AA55 Length = 275 Score = 126 bits (316), Expect = 9e-28, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 82/224 (36%), Gaps = 8/224 (3%) Query: 16 IYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRNLGLH 75 + +++ ++L+ ++ S H+ + L+ Sbjct: 56 VKIGDEELYPVPGQLVLMPARTRQSYSVISGRPYL-----KYWSHFSATVGDSDVFSWLN 110 Query: 76 SKDRLLINQSPPMP-LVTAIFDSFNESGVNSPILSNMLYLSCLS-MFSHKKELIPLLFNS 133 ++ + MP L + D+ + + + + L LS +F H++ I Sbjct: 111 VPHCYDLSGNAEMPALFQQLVDAHRSDTLAARLREKSVMLDILSRVFEHQQPQIHADKME 170 Query: 134 ISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMA 192 KV++ I + + L +A ++ + K + K L RM A Sbjct: 171 DMGRLHKVQQYIKNHLHEEITLEQMAGTLHLHPNYFIKYFKRHFGITPQKYLSLKRMEQA 230 Query: 193 RRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 + +L + + IA+ G+ S +YF TFR+ G +P ++ + Sbjct: 231 KLMLRTTSLSIKEIADATGFESANYFSKTFRKEVGYSPSEYRNN 274 >UniRef50_A1HM14 Two component transcriptional regulator, AraC family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HM14_9FIRM Length = 247 Score = 126 bits (316), Expect = 9e-28, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 64/170 (37%), Gaps = 4/170 (2%) Query: 75 HSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSI 134 +D +LI + + P+ + + ++ Sbjct: 75 PRQDVILITVHDDFQFIQNAIRQGVCDYLLKPVELPAMKECLENWLQRRRREAAAAAGPE 134 Query: 135 S---TVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMS 190 + +V R ++ L D A R++ + S + + + E CF + +M Sbjct: 135 EQALSPIQQVLRYMAETPLGDINLTDAARRVHMNPSYLSQLFKQEMQVCFVDYVTDLKMK 194 Query: 191 MARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGT 240 A+RLL + + IA++ GY+ +YF N F+++ +P ++ + T Sbjct: 195 EAKRLLATTTLRISEIADRLGYADLAYFSNIFKKHTACSPSEYRKQQART 244 >UniRef50_A6GLT9 Transcriptional regulator, AraC family protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GLT9_9BURK Length = 329 Score = 125 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 56/109 (51%), Gaps = 1/109 (0%) Query: 129 LLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASR 188 L + V+G+V R++ + L D+A + S ++++L +E FS +L A R Sbjct: 221 LRQRQVEGVTGQVRRILLGPMGLLSTLEDVARSLSISPRSLRRRLAEEGVSFSDLLDAER 280 Query: 189 MSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 +A +LL Q+ L +A GY T+ F FR++Y +P ++ ++ Sbjct: 281 QQLAEQLL-STQMKLDEMALHLGYGDTASFTRAFRRWYNCSPGEYRRNQ 328 >UniRef50_C9RVZ3 Two component transcriptional regulator, AraC family n=4 Tax=Geobacillus RepID=C9RVZ3_GEOSY Length = 513 Score = 125 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 1/99 (1%) Query: 139 GKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLE 197 GK + I A+ L ++AE+ S K ++ F + R+ A+ L Sbjct: 411 GKAKDYIDRHYAEPLTLEEVAEQAGISPYYFSKLFKEHFGITFIDYVTNVRIERAKEALA 470 Query: 198 LRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 L I GY+ +YF F++ G++P ++ + Sbjct: 471 ETDQSLKEICFSVGYNDPNYFSRVFKKQTGLSPSEYRKK 509 >UniRef50_C0VNX7 AraC family transcriptional regulator n=1 Tax=Acinetobacter sp. ATCC 27244 RepID=C0VNX7_9GAMM Length = 401 Score = 125 bits (314), Expect = 1e-27, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 93/223 (41%), Gaps = 7/223 (3%) Query: 20 QQKISLHNESILLLEKNLADDFAFCSPDTRRLDID-ELTVCHYLQNIRQLPRNLGLHSKD 78 + K+ +++ L F F L V + Q + D Sbjct: 169 KPKLQVNDGKAYLYFNQPLQQFRFNRHAIIFLVFGFAQIVENLAQQRLDIRFEFQQDKPD 228 Query: 79 RL--LINQSPPMPLVTAIFDSF--NESGVNSPILSNMLYLSCLSMFSHKKELIPLLFN-- 132 + N + A D N++ ++ P+ + ++ L++ K+++ L Sbjct: 229 FYKKIFNINQLNGEFNAKNDCLILNQNVLSLPLKTADALVARLTIQQCKQDIQKLFLKRK 288 Query: 133 SISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMA 192 ++ + + V+ + + L+ +AER++ SE ++++L E T F ++ R A Sbjct: 289 NVDSAAKNVKEELYDEALGFLSLKQVAERLHLSERTLQRQLAKEQTSFQLLIAEVRRKQA 348 Query: 193 RRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 LL+ + + + IAE+ GY+ S+F F+++ VTP + + Sbjct: 349 EFLLKQQHLSIEQIAERLGYADISHFSRAFKKWTNVTPKFYRE 391 >UniRef50_B4X435 Transcriptional regulator, AraC family protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4X435_9GAMM Length = 377 Score = 125 bits (314), Expect = 1e-27, Method: Composition-based stats. Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 9/135 (6%) Query: 104 NSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMY 163 I L C + + K+ L+PL+ ++ +L+ A+ +A+ + Sbjct: 252 ADSITHQRLVNQCEELMTRKQALLPLV--------SRIRQLLGQGHAEPNQ-ESVAQALN 302 Query: 164 TSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFR 223 S S +K+ L ENT F +L R A RLL L IAE+ GYS + F + FR Sbjct: 303 MSRSTLKRHLARENTHFQAVLTNIRKENAVRLLLGTTHSLEHIAEQLGYSDQTNFSHAFR 362 Query: 224 QYYGVTPHQFAQHSP 238 Q+ G+TP +F +HS Sbjct: 363 QWSGMTPGRFRKHSQ 377 >UniRef50_A6CLV0 AraC-type DNA-binding domain-containing protein n=1 Tax=Bacillus sp. SG-1 RepID=A6CLV0_9BACI Length = 525 Score = 125 bits (314), Expect = 1e-27, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 60/119 (50%), Gaps = 5/119 (4%) Query: 122 HKKELIPLL----FNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE- 176 KEL+ +L + ++E + + + L++IA+R Y S I +K + + Sbjct: 401 EFKELVKILSDAKYQKEKNSMQRIEEYLQKNYQEDINLQEIADRFYLSREYISRKFKQDY 460 Query: 177 NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 + + L + RM A+ LL+ + ++ +A GY + YF F+++ GVTP+++ Q Sbjct: 461 DATITDYLTSIRMEKAKNLLKNPYLKIYEVAYGVGYQNEKYFSKVFKKHEGVTPNEYRQ 519 >UniRef50_P43459 Transcriptional activator perA n=24 Tax=Escherichia coli RepID=PERA_ECO27 Length = 274 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 57/227 (25%), Positives = 106/227 (46%), Gaps = 8/227 (3%) Query: 12 RSFDIYHEQQK--ISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLP 69 F I ++++ ++ + S+ L KN D D + ++ + + Sbjct: 39 NQFKIRNKKEFTEYTIESNSLFFLAKNTHWDMEIVGIDNSNPYRKIIIDDALIKLLHSIS 98 Query: 70 RNLGLHSKDRLLINQSPPMPL--VTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELI 127 + + K ++ M L V+ I SG N I L LS F+ +++ Sbjct: 99 SDDSCYVKKKIFTANLNEMQLNIVSNIITDIKYSGNNKKIFK---ILYLLSFFNDYNDIV 155 Query: 128 PLLFNSIS-TVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLA 186 ++ ++ S ++ +V ++I DI+K W L D++ M+ S+S ++K+L EN F KI+L Sbjct: 156 NVILSASSKSIVDRVIKVIELDISKNWKLGDVSSSMFMSDSCLRKQLNKENLTFKKIMLD 215 Query: 187 SRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 +M A L + I+ G++STSYFI F++YY TP ++ Sbjct: 216 IKMKHASLFLRTTDKNIDEISCLVGFNSTSYFIKVFKEYYNTTPKKY 262 >UniRef50_Q1N3I2 AraC-type DNA-binding domain-containing protein n=1 Tax=Bermanella marisrubri RepID=Q1N3I2_9GAMM Length = 338 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 60/122 (49%), Gaps = 2/122 (1%) Query: 119 MFSHKKELIPLLFNSISTVSGKVERLISFDI--AKRWYLRDIAERMYTSESLIKKKLQDE 176 + + + N+ ++++ ++ R++ ++ ++ +A ++ TS ++++L++E Sbjct: 214 LLKEAPYVFLVKPNNTTSINAQIRRILQGNMDDSELPDFETVAHKLNTSTQTLRRRLKEE 273 Query: 177 NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 NT F I R MA L I ++ IA K G++ S F F+++ G+TP + Sbjct: 274 NTSFQAIKDQVRRDMAIYYLGDPNISINEIALKVGFTEPSTFHRAFKKWTGMTPGDYRSE 333 Query: 237 SP 238 Sbjct: 334 QA 335 >UniRef50_C0CVY3 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CVY3_9CLOT Length = 529 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 54/122 (44%), Gaps = 1/122 (0%) Query: 114 LSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKL 173 ++ + + + + + + I + K L ++A + S K Sbjct: 401 QKFVAAMVELAQAVVIKNQEPDGIITRAQDYIRQNFRKDISLEEVARTVGISPYYFSKLF 460 Query: 174 QDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQ 232 ++E F++ L R+ A+RLL R++ + + GY++ +YF F+++ G+TP + Sbjct: 461 KEEAGMNFTEYLTGIRIETAKRLLSERELSIKQVCVDSGYANPNYFSRIFKKWVGITPTE 520 Query: 233 FA 234 F Sbjct: 521 FR 522 >UniRef50_C6IYS4 Response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IYS4_9BACL Length = 527 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 61/142 (42%), Gaps = 7/142 (4%) Query: 105 SPILSNMLYLSCL--SMFSHKKELIPL----LFNSISTVSGKVERLISFDIAKRWYLRDI 158 +P L + + L +F H ++ L L ++ + + + A+ L+ + Sbjct: 380 APWLQQHIGGAKLKDELFRHLHAVMSLYHGQLGEGQASHVQRAKAYMESCPAEELSLQQV 439 Query: 159 AERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSY 217 A ++ S + + + E + F + A RM A LL + + IA GY Y Sbjct: 440 AAYVHLHPSHLSELFKKETGSTFGYYVTALRMRRAMELLAVSPAKVSEIAGLTGYEDVKY 499 Query: 218 FINTFRQYYGVTPHQFAQHSPG 239 F F+++ G TP +F + +PG Sbjct: 500 FSRLFKKHTGKTPSEFREEAPG 521 >UniRef50_C6CTP9 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CTP9_PAESJ Length = 537 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 83/223 (37%), Gaps = 19/223 (8%) Query: 29 SILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPM 88 S+ + A S + ++ V +L+N R LP + +S Sbjct: 317 SLSIAAYEERFRLAVWSGKEKDIETA---VDSFLENARLLPVITQEQIELWRFEYESMLS 373 Query: 89 PLVTAIFDSFNESGVNSPILSNMLYLSC-----LSMFSHKKELIPLLF----------NS 133 + P LY+ LS+ ++EL+ L N Sbjct: 374 RWRQELAAKQGIQAGAEPSSGLPLYVLLDEQGRLSLELCRRELLNGLTAFAALTGAGGNK 433 Query: 134 ISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMA 192 ++ + R + + + L+DI+ER Y S I ++ + E L R+ A Sbjct: 434 EHSIMRDIARYMEQNYNREVTLQDISERFYLSREYISRRFKQEMGENVFDYLGRIRVEKA 493 Query: 193 RRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 + LL+ + + IAE GY YF F+++ G +P+Q+ + Sbjct: 494 KLLLQNPNLKIAQIAEMVGYDDDKYFSKVFKKFEGQSPNQYRK 536 >UniRef50_D0Z2K1 Transcriptional regulator AraC family n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z2K1_LISDA Length = 264 Score = 124 bits (312), Expect = 2e-27, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 91/221 (41%), Gaps = 9/221 (4%) Query: 20 QQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRNLGLHSKDR 79 + I H ++ LL+ + F T+ T +L L + D Sbjct: 43 GRWIRFHKKNWLLIPAHSRITFVNNPHQTQF----RSTQISFLIPPTAEMIQLSQQNADT 98 Query: 80 LLINQSPPMPLVTAIFDSFNESGVNSP-----ILSNMLYLSCLSMFSHKKELIPLLFNSI 134 + + P +V + ++ P + L + K +L L Sbjct: 99 VSNHLDSPEFIVDDEGRYLWQLLLSMPKELSQAIQQQLVNGLYQYLAEKGQLHLLYAPQE 158 Query: 135 STVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARR 194 + + K+ + S D ++ + + + ++ S++ + ++L DE+T F ++L RM A Sbjct: 159 ISWTEKLTQFFSQDPSQNYTIEQVCQQFGLSKATLMRRLNDESTQFREVLAQVRMGHALS 218 Query: 195 LLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 LL+ + + +A++CGY S F F++ +G++P Q+ + Sbjct: 219 LLQEKSQTVLELAQQCGYQSEVRFTQRFQKQFGLSPKQYQK 259 >UniRef50_C5BHZ4 Helix-turn-helix-domain containing protein, AraC type n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BHZ4_TERTT Length = 350 Score = 124 bits (312), Expect = 2e-27, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 71/157 (45%), Gaps = 3/157 (1%) Query: 82 INQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKV 141 + Q + + + +F+++ + P++ + S ++ S + + + +V Sbjct: 191 VRQESVIHDCSDVGFAFSKAVLEYPLVQDH--ESLMAFLSTAPYHLVTQDPLKLSFTERV 248 Query: 142 ERLISFDIAKRW-YLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQ 200 ++ ++ + ++E + S + ++++L E T + K+ RM +A L + Sbjct: 249 RNILKREVNRSIPSAEQLSEMLNMSVTTMRRQLSKEGTSYQKLKDECRMEVAIHYLACAE 308 Query: 201 IPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 + IAEK G+ S F +F+++ G TP ++ Q Sbjct: 309 LSNADIAEKLGFDEPSAFFRSFKKWTGQTPGEYRQQQ 345 >UniRef50_B3EYL7 Two-component response regulator n=5 Tax=Firmicutes RepID=B3EYL7_BACST Length = 404 Score = 124 bits (312), Expect = 2e-27, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 2/106 (1%) Query: 132 NSISTVSGKVERLISFDIAK-RWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRM 189 + +S + + + I ++ L +AE + S + + ++ E F +L RM Sbjct: 290 SRLSPIVRRARQYIQKHFSQSDLTLESVAEFLNVSPVYLSRMIKQELGISFIHLLTKIRM 349 Query: 190 SMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 A LL ++P+H IAE+ GY + YF F++ GV+P+Q+ + Sbjct: 350 EKAAELLLSTELPIHEIAERVGYDTQHYFSTAFKKAMGVSPNQYRR 395 >UniRef50_Q2RGN4 Two component transcriptional regulator, AraC family n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RGN4_MOOTA Length = 548 Score = 124 bits (312), Expect = 2e-27, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 1/129 (0%) Query: 108 LSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSES 167 L++M + + ++ S++ + + I + ++ L ++A ++Y S Sbjct: 409 LADMRERILERLMALVAQVAETREQRNSSLIDRASKYIEANFSQDLTLEEVARQVYLSPC 468 Query: 168 LIKKKLQD-ENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYY 226 K + + F L R+ AR LL ++P+ IA + GY YF F++ Sbjct: 469 YFSKLFKQFKGLNFIDYLTKVRLKAARELLLNTKLPVAEIATRVGYRDARYFGQVFKKQE 528 Query: 227 GVTPHQFAQ 235 G TP F + Sbjct: 529 GYTPSVFRK 537 >UniRef50_B2HZ04 AraC-type DNA-binding domain-containing protein n=17 Tax=Acinetobacter RepID=B2HZ04_ACIBC Length = 341 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 48/96 (50%) Query: 140 KVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELR 199 +V ++S + ++AE ++ S+ +K++L E T FS ++ R A LL Sbjct: 242 RVRDILSNSEQHYLSIENVAEYLHMSDRTLKRQLAAEGTSFSTLVDEVRYRHATSLLSRT 301 Query: 200 QIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 L IA++ GYS + F F+++ G +P + + Sbjct: 302 DYSLEQIADELGYSDVANFSRAFKRWSGRSPSNWRK 337 >UniRef50_B7S017 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S017_9GAMM Length = 343 Score = 124 bits (311), Expect = 3e-27, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 68/163 (41%), Gaps = 11/163 (6%) Query: 78 DRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTV 137 L + + + D + + + C ++ K + Sbjct: 190 PVLFEREHNQLSFPADLLDQPLSFANEAA--AQLCEQQCAALLGELKR--------TDGI 239 Query: 138 SGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLE 197 G+V R+++ K + ++A + E ++++L DE+T + +++L RM +A L Sbjct: 240 EGEVRRILANQPGKYPGIIEVARALAMGERTLRRRLADEDTTYKQVVLEFRMELAASYLR 299 Query: 198 LRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ-HSPG 239 + + IA GY+ S F TF ++ G+TP+ + + H G Sbjct: 300 GNAMSIQEIAYVTGYADPSNFHRTFNKHQGLTPNAYRRLHQAG 342 >UniRef50_C9NYS3 Transcriptional regulator AraC family n=9 Tax=Vibrionales RepID=C9NYS3_9VIBR Length = 349 Score = 124 bits (311), Expect = 3e-27, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 66/141 (46%), Gaps = 2/141 (1%) Query: 98 FNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRD 157 F+ S +++P+ S + + S + L + +S + K+ ++ + + Sbjct: 203 FDASQLHNPLPSANAMTLQMCLKSCDEMLAKV--SSTPNLKEKITQIFIERPGRYPSIEA 260 Query: 158 IAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSY 217 ++ + S +++ L+ E T + +IL R +A+ L + + I+E+ G+S ++ Sbjct: 261 LSSELGMSSRTLRRHLKAEQTGYQQILDHVRFHLAKYYLVSTGLNIEEISERVGFSDSAN 320 Query: 218 FINTFRQYYGVTPHQFAQHSP 238 F + FR++ G +P F + Sbjct: 321 FRHAFRKWNGCSPKAFRNQAA 341 >UniRef50_B0K3C5 Response regulator receiver protein n=4 Tax=Thermoanaerobacter RepID=B0K3C5_THEPX Length = 530 Score = 124 bits (311), Expect = 3e-27, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 57/125 (45%), Gaps = 1/125 (0%) Query: 112 LYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKK 171 + L S +L + + + +V + I+ + K L+++++ +Y + + Sbjct: 401 ITLWATSFLEEISDLFAGAKRNENNIVERVVKYINENFEKEIRLKELSQTIYLNPEYFSR 460 Query: 172 KLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTP 230 + E +++ L R+ A++ L + + IA K GY +YF F++ G++P Sbjct: 461 LFKKEVGCTYAEYLTRIRIEAAKKYLANPSLTISEIARKVGYQDANYFSKVFKKVVGISP 520 Query: 231 HQFAQ 235 +F + Sbjct: 521 SEFRK 525 >UniRef50_A7HP74 Helix-turn-helix-domain containing protein AraC type n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HP74_PARL1 Length = 354 Score = 124 bits (311), Expect = 3e-27, Method: Composition-based stats. Identities = 29/139 (20%), Positives = 62/139 (44%), Gaps = 2/139 (1%) Query: 101 SGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAE 160 S ++ P+ + + ++ + ++ L + N+ +SG V R+I L + + Sbjct: 186 SRIDQPLSAAAIPVAEMYRLQCERLLREM--NAAGGMSGNVRRMILGARGHLPALGEASR 243 Query: 161 RMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFIN 220 + SE ++++L E T + I+ R +AR L + + +A G+ + F Sbjct: 244 HLNMSERTLRRRLAAEGTSYRGIVDDVRNHLARGYLGETPLCVADVASLLGFDDVANFRR 303 Query: 221 TFRQYYGVTPHQFAQHSPG 239 F+++ G TP +F S Sbjct: 304 AFKKWNGCTPQEFRLRSGA 322 >UniRef50_Q8GA34 AraC-like transcriptional regulator n=2 Tax=Escherichia coli RepID=Q8GA34_ECOLX Length = 271 Score = 124 bits (311), Expect = 3e-27, Method: Composition-based stats. Identities = 46/137 (33%), Positives = 73/137 (53%), Gaps = 2/137 (1%) Query: 98 FNESGVNSPILSNMLYLSCL--SMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYL 155 FN+ + ML LS L M +I L+ ++ T + K+ I + +KRW L Sbjct: 128 FNKIETSKDSALKMLKLSYLISRMGIAPDIIISLMASTAVTFTEKIRNQIENNPSKRWCL 187 Query: 156 RDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSST 215 IA+ SE ++K+L+ E T FS + L RM + +LL ++ + I++ G+ ST Sbjct: 188 NMIADEFNISEISVRKRLESEGTSFSNLFLKVRMEKSMQLLLQNELQICQISKSVGFRST 247 Query: 216 SYFINTFRQYYGVTPHQ 232 SYFI F+ Y+G+TP Q Sbjct: 248 SYFIKIFKDYFGITPKQ 264 >UniRef50_C6CVC0 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CVC0_PAESJ Length = 539 Score = 124 bits (311), Expect = 3e-27, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 1/121 (0%) Query: 118 SMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE- 176 S+F + I + I+ A+ L+DIA+ ++ S + I + + E Sbjct: 416 SVFHQIMDRISARRPQYGEAVERACEYITLHYAEDLMLQDIADHVHLSRTYISELFKKET 475 Query: 177 NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 +++ L+ RM A+ LL+ + + + A GYS+TSYFI F+ Y G++P ++ + Sbjct: 476 GMNYNEYLMQVRMEKAKELLKRQTLKVADAAALVGYSNTSYFIKLFKNYTGLSPSEYMEQ 535 Query: 237 S 237 Sbjct: 536 Q 536 >UniRef50_Q2SDE2 AraC-type DNA-binding domain-containing protein n=13 Tax=Gammaproteobacteria RepID=Q2SDE2_HAHCH Length = 397 Score = 123 bits (310), Expect = 3e-27, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 68/140 (48%), Gaps = 3/140 (2%) Query: 97 SFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKR-WYL 155 F++ + P++ + L S L + +T + K+ L+ D++++ Sbjct: 252 YFHKRYLQLPVIQDEPSLKEFLKTSPADLLA--RPDDSNTYTSKIRALVGRDLSQQMPDF 309 Query: 156 RDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSST 215 IA ++ S ++++L++ENT F +I R A L R++ ++ IA K G++ Sbjct: 310 EFIASQINVSPQTLRRRLKEENTSFQEIKDNMRRDAAIYYLSRREMSINEIAFKVGFTEP 369 Query: 216 SYFINTFRQYYGVTPHQFAQ 235 S F F+++ GVTP + + Sbjct: 370 STFHRAFKKWTGVTPGDYRE 389 >UniRef50_Q5WK40 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WK40_BACSK Length = 407 Score = 123 bits (310), Expect = 4e-27, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 71/153 (46%), Gaps = 11/153 (7%) Query: 85 SPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERL 144 P+ L T++ F E G +Y S LS S L+ + + ++ +V Sbjct: 265 QAPITLTTSLPFLFWEEGPK-------IYQSFLSGTSP---LVQEVRHKKEQLAVRVYEY 314 Query: 145 ISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPL 203 + ++ L+++A+ ++ + + + K+ ++E FS + RM A LL + + Sbjct: 315 VEAHFFEQPSLQEVADHLFLNAAYLSKRFKEETGEKFSDYIHRLRMDRAVELLAETNMKV 374 Query: 204 HTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 IA+K GY SYFI F++ + +TP +F Sbjct: 375 SQIAKKLGYKDASYFIKVFKREFHMTPQEFRSR 407 >UniRef50_Q2SUV3 Transcriptional regulator, AraC family n=34 Tax=pseudomallei group RepID=Q2SUV3_BURTA Length = 398 Score = 123 bits (310), Expect = 4e-27, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 54/99 (54%) Query: 137 VSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLL 196 +G+V R ++ D A+ + +A + S ++++L DE T + ++ R ++A LL Sbjct: 298 WAGRVRRHLAGDPARGPTMDVLAAELGVSVRTLRRRLADEGTDYETVVDEIREALAEALL 357 Query: 197 ELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 + + ++E+ GYS S F FR++ ++P+++ + Sbjct: 358 ATTTLTVAEVSERLGYSEPSAFARAFRRWKAMSPNEYRR 396 >UniRef50_Q88C44 Transcriptional regulator, AraC family n=16 Tax=cellular organisms RepID=Q88C44_PSEPK Length = 356 Score = 123 bits (310), Expect = 4e-27, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 58/116 (50%) Query: 119 MFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENT 178 S + + L F G++ +L++ + L +A +M S +++ LQ + Sbjct: 240 AMSERCRRLNLEFTGRQAWLGRIRQLLAQQLDAAPGLEGLARQMNCSSRTLRRHLQALGS 299 Query: 179 CFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFA 234 + ++L R A++LL Q+P++ IAE G+S T+ F + F+++ GV P F Sbjct: 300 SYQQLLDELRFERAKQLLADEQMPIYRIAETLGFSETASFRHAFQRWSGVAPSHFR 355 >UniRef50_A1TXY8 Transcriptional regulator, AraC family n=2 Tax=Marinobacter RepID=A1TXY8_MARAV Length = 346 Score = 123 bits (310), Expect = 4e-27, Method: Composition-based stats. Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 1/110 (0%) Query: 131 FNSISTVSGKVERLISFDIA-KRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRM 189 + + S KV RLIS +A R +A + + S + +KL+ E F ++ R Sbjct: 234 LQTRRSFSRKVRRLISRQMATDRIDADTLARQCHMSRQTLYRKLKKEGMSFHDLVEQVRK 293 Query: 190 SMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPG 239 A R + Q L IA G+S S F F+++ GV P QF G Sbjct: 294 DKALRYVADDQYALGEIAFLLGFSELSAFSRAFKRWTGVAPAQFRASHQG 343 >UniRef50_Q21JI5 Transcriptional regulator, AraC family n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21JI5_SACD2 Length = 344 Score = 123 bits (310), Expect = 4e-27, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 55/104 (52%), Gaps = 1/104 (0%) Query: 132 NSISTVSGKVERLISFDIAKR-WYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMS 190 + + KV ++ D++ ++A +++ S + +++KLQ++NT + ++ RM Sbjct: 239 PAHIRFADKVRNILKKDVSASMPSSDEVASQLHMSTTTLRRKLQNDNTSYQRLKDECRME 298 Query: 191 MARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFA 234 A LL + + IA+K G+ S F +F+++ G TP ++ Sbjct: 299 AAFHLLNCADLSNNEIAQKLGFDEPSAFFRSFKKWTGQTPGEYR 342 >UniRef50_A4XTI6 Transcriptional regulator, AraC family n=6 Tax=Pseudomonas aeruginosa group RepID=A4XTI6_PSEMY Length = 360 Score = 123 bits (309), Expect = 5e-27, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 54/102 (52%) Query: 134 ISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMAR 193 V+G+V +L+ + + +A R++ S ++++L +E + F + R ++A Sbjct: 257 HQGVAGRVRQLLLQTPGQMADMEQVASRLHLSSRTLRRRLIEEGSSFRALQDEVREALAD 316 Query: 194 RLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 LL + L IAE+ GY S FI+ F+++ G TP ++ + Sbjct: 317 ELLAAGGLSLEEIAERLGYGELSNFIHAFKRWKGTTPGRYQR 358 >UniRef50_B6RAA0 Transcriptional regulator, AraC family n=4 Tax=Alphaproteobacteria RepID=B6RAA0_9RHOB Length = 263 Score = 123 bits (309), Expect = 5e-27, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 64/152 (42%), Gaps = 3/152 (1%) Query: 83 NQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVE 142 + P ++ + ++ + + L L L H + L KV Sbjct: 111 KEHKPEDVLALMKETLANTSL-PEALRQHRLLEPLIWLRHIG--VNLSKPDTDNPLSKVR 167 Query: 143 RLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIP 202 LI D++ W D+A SE+ ++ L F+K+LL +R+ LL+ P Sbjct: 168 SLIETDLSYAWRATDVASHFAMSEATFRRWLAKSGHGFAKVLLHTRLEKGLTLLQSTHEP 227 Query: 203 LHTIAEKCGYSSTSYFINTFRQYYGVTPHQFA 234 + IA CG+++ S+F F++ +G+ P + Sbjct: 228 ISNIALDCGFNTPSHFSEAFKKRFGIRPKEIR 259 >UniRef50_A4Y0S8 Transcriptional regulator, AraC family n=1 Tax=Pseudomonas mendocina ymp RepID=A4Y0S8_PSEMY Length = 342 Score = 123 bits (309), Expect = 5e-27, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 3/120 (2%) Query: 121 SHKKELIPLLFNSISTVSGKVERLISFDIAK-RWYLRDIAERMYTSESLIKKKLQDENTC 179 H + L+ L ++ ++S +V L+ +A +A ++ SE ++++L +E Sbjct: 223 QHAEALLARLPSA--SLSARVIGLLGEQLAHGEPDRAQLARALHLSERTLQRRLAEEGCN 280 Query: 180 FSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPG 239 + ++L +R +A R L ++P IA GYS S F FRQ+ G+ P ++ Sbjct: 281 YQQLLADTRRQLAERYLREGRLPAAEIALLLGYSEPSVFFRAFRQWTGLPPGEYRAQQAS 340 >UniRef50_A8S8Z3 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S8Z3_9FIRM Length = 420 Score = 123 bits (309), Expect = 5e-27, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 51/101 (50%), Gaps = 1/101 (0%) Query: 136 TVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTC-FSKILLASRMSMARR 194 V +V+ I +++R L D+A S + + + F + + +R++ A+ Sbjct: 318 QVVAQVQEYIQSHLSERLTLADVAAVFNFSPNYLSQLFGKYGDSGFVEYITETRIAAAKE 377 Query: 195 LLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 +LE + ++ IAEK GY S YF F++ G++P ++ Q Sbjct: 378 MLEQGDLKVYEIAEKLGYESAFYFSKVFKKVTGLSPREYQQ 418 >UniRef50_A6NS86 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NS86_9BACE Length = 425 Score = 123 bits (309), Expect = 6e-27, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 2/139 (1%) Query: 97 SFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLR 156 F+ES L+L+ ++ + L+ + K + + R L Sbjct: 271 CFSESDHLRTAEELALWLTRMT-DRFTDTVFSLVEVKHRDIICKAIEYLKRNCRDRVTLE 329 Query: 157 DIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSST 215 D A + S S + ++E F+ L A R+S R +L + I ++CG+ Sbjct: 330 DTAGHVGLSPSYFSRVFKEEVGESFNSYLTALRISRGRAMLLDTDASIAEICDRCGFDDQ 389 Query: 216 SYFINTFRQYYGVTPHQFA 234 SYF FR+Y GVTP +F Sbjct: 390 SYFTKVFRKYTGVTPGRFR 408 >UniRef50_C6CT15 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CT15_PAESJ Length = 520 Score = 123 bits (309), Expect = 6e-27, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 78/160 (48%), Gaps = 10/160 (6%) Query: 78 DRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTV 137 D L+ P + + ++ D FN + + + ++L LS + S +KE + V Sbjct: 368 DELVKLTPPGVGVYQSVADFFNLTEL-KERIQHLLELSMYRLASLRKE-------GGNRV 419 Query: 138 SGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLL 196 V++LI D K L +++E+++ + S + + E ++ +L RM A+ LL Sbjct: 420 IETVKQLIQQDYDKDLELTELSEKVFLNPSYLSTLFKQETGLTITQYVLQLRMMKAKELL 479 Query: 197 ELR-QIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 + R + ++ + E+ GY + YF F++ G+TP ++ Sbjct: 480 KKRLDLKVYEVGEQVGYPDSIYFNKVFKKMVGITPKEYRN 519 >UniRef50_B5JW86 Helix-turn-helix-domain containing protein, AraC type n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JW86_9GAMM Length = 320 Score = 123 bits (309), Expect = 6e-27, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 1/141 (0%) Query: 97 SFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLR 156 SF+ + P+ L +S+ + L L + + + RL+ + Sbjct: 179 SFDREVLKKPMPLANLNSYKMSVEQCEALLERLPKLNHNLATAIQRRLLMQH-GELPSQE 237 Query: 157 DIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTS 216 +AE ++ S + + LQ E T F +I+ A+RLLE ++ + IA + GYS ++ Sbjct: 238 LVAEELHMSTRTLHRLLQREGTSFREIVKEVLTVQAKRLLENSELSISQIALELGYSDSA 297 Query: 217 YFINTFRQYYGVTPHQFAQHS 237 F F++ G P F Q S Sbjct: 298 NFTRAFKKATGQAPSAFRQPS 318 >UniRef50_Q2SNQ4 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SNQ4_HAHCH Length = 365 Score = 123 bits (308), Expect = 6e-27, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 51/101 (50%), Gaps = 1/101 (0%) Query: 136 TVSGKVERLISFDIA-KRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARR 194 ++ +V L+ +A + L+ +A+ ++ SE +++ L E T F +++ R +A R Sbjct: 257 KLTQRVRSLLRQTMATEETSLQKVAQTLHLSERSLQRHLSQEGTNFRELVDEVRQEIAER 316 Query: 195 LLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 L+ + + IA G++ F F++++ +P + Q Sbjct: 317 YLKSSSMSISQIAYSLGFNDAGNFSRAFKRWFSCSPETYRQ 357 >UniRef50_B7S1R2 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S1R2_9GAMM Length = 342 Score = 123 bits (308), Expect = 6e-27, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 60/137 (43%), Gaps = 8/137 (5%) Query: 104 NSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMY 163 + P S L C + + S + +V L+ + +A ++ Sbjct: 214 SDPESSRHLQQQCQMLIAK--------MTSHGSFVDEVRLLMLARPGYFPDIDALAGKIG 265 Query: 164 TSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFR 223 S ++++L++E + F ++L R +AR L +P+ I+ GY+ F + F+ Sbjct: 266 MSARTLRRRLKNEGSTFREVLEEIRYGLAREYLANTHLPMDEISLLLGYTEAGNFSHAFK 325 Query: 224 QYYGVTPHQFAQHSPGT 240 ++ G++P + QH+ + Sbjct: 326 RWSGLSPSLWRQHADSS 342 >UniRef50_Q9KFJ6 Transcriptional regulator (AraC/XylS family) n=2 Tax=Bacillus RepID=Q9KFJ6_BACHD Length = 769 Score = 123 bits (308), Expect = 6e-27, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 60/113 (53%), Gaps = 1/113 (0%) Query: 124 KELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSK 182 + + + T+S ++ +I + L IAER++ + + + + E N FS+ Sbjct: 653 HTVAERMDSQYRTISDQIIHIIQNEFDMELTLESIAERLHYNPNYLSSIFRKETNISFSE 712 Query: 183 ILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 L + R++MA++ L +P+ IAE+ Y ++ FI +F++ G+TP ++ Q Sbjct: 713 YLSSYRLAMAKKWLLETSMPIREIAERLCYGNSQNFIRSFKKKEGMTPGKYRQ 765 >UniRef50_C4G7K2 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G7K2_ABIDE Length = 357 Score = 123 bits (308), Expect = 7e-27, Method: Composition-based stats. Identities = 37/194 (19%), Positives = 75/194 (38%), Gaps = 18/194 (9%) Query: 60 HYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTA-IFDSFNESGVNSPILSNMLYLSCLS 118 + IR+ + RL ++ P PL+ I D + P ++++ L Sbjct: 149 SFHAAIRKKDNEWLENFIVRLFVDGDSPAPLIADWIGDYLGREALIPPEAADIIVKQYLE 208 Query: 119 MFSHKK---------------ELIPLLFNSISTVSGKVERLISFDIA-KRWYLRDIAERM 162 S E + + + + V+ + + + + + +A M Sbjct: 209 KMSQMPDGKADFLLRECTKLMERQERMEENAVSFTESVKEYVLRNYSDENLGVETLAAEM 268 Query: 163 YTSESLIKKKL-QDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINT 221 S I + +D + ++ +RM A+RLL + + IA +CG+S +YF Sbjct: 269 GFSAGYIGRIFARDVGVSLQEFIIQTRMHEAKRLLRETRDTVAVIANRCGFSDANYFSKV 328 Query: 222 FRQYYGVTPHQFAQ 235 FR+ G +P +F + Sbjct: 329 FRKRCGSSPKEFRE 342 >UniRef50_P10805 Porin thermoregulatory protein envY n=41 Tax=Enterobacteriaceae RepID=ENVY_ECOLI Length = 253 Score = 123 bits (308), Expect = 7e-27, Method: Composition-based stats. Identities = 65/235 (27%), Positives = 107/235 (45%), Gaps = 6/235 (2%) Query: 5 CSVILIRRSFDIYHEQ-QKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQ 63 C VIL + ++ +L + N I+ + YL Sbjct: 9 CVVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLL 68 Query: 64 NIRQLPRNLGLHSK-DRLLINQSPPMPLVTAIFDSFNESGVNSP---ILSNMLYLSCLSM 119 + + + S+ +I P V + + ++ + P L+ L + LS Sbjct: 69 FLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSN 128 Query: 120 FSHKKELIPLLFNSI-STVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENT 178 F + I LL + S+V V R+I DI W LR +A + S SL+KKKL++ENT Sbjct: 129 FLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENT 188 Query: 179 CFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 +S+I+ RM A ++L + + +A+ CGYSSTSYFI+ F+ +YG+TP + Sbjct: 189 SYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243 >UniRef50_UPI0001788F54 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788F54 Length = 523 Score = 122 bits (307), Expect = 8e-27, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 1/122 (0%) Query: 118 SMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE- 176 + + I S++ ++ I A L +A + + + S + Sbjct: 396 AFIREAERAIGETNTSVNPNMDRLLEYIQDHYADPITLTGVARQFHFNASYLSSYFASYN 455 Query: 177 NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 FS+ L R+ A LL ++ + I+ GYS SYF F++ G++P QF + Sbjct: 456 GEGFSEYLNKIRLEKAMELLLTTELTISEISASVGYSDQSYFTKVFKKQTGISPSQFRRQ 515 Query: 237 SP 238 + Sbjct: 516 NA 517 >UniRef50_C8WRN2 Transcriptional regulator, AraC family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRN2_ALIAD Length = 274 Score = 122 bits (307), Expect = 9e-27, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 66/156 (42%), Gaps = 4/156 (2%) Query: 84 QSPPMPLVTAIFDSFNESG-VNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVE 142 + L + + + G + + +L CL+ + + P + + ++ Sbjct: 120 HENCVYLWRQLIEEYRRPGKPDEELCDYLLRALCLTFDKYGYD--PKRATPVPIAAERIR 177 Query: 143 RLISFDIAKRWYLRDIAERMYTSESLIKKKLQD-ENTCFSKILLASRMSMARRLLELRQI 201 I A+ L DIA+ + S S + ++ + L R+ MA + + Sbjct: 178 AYIERHAAEDLSLSDIADAVGLSVSRVVHIFKEAYGQTVVQYLQNVRLQMACDRMRFSNL 237 Query: 202 PLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 L IA++CG+ S SYF FRQ YG++P +F Q + Sbjct: 238 NLEEIADRCGFHSYSYFYRVFRQKYGISPREFRQRA 273 >UniRef50_D0SJB7 Predicted protein n=1 Tax=Acinetobacter junii SH205 RepID=D0SJB7_ACIJU Length = 351 Score = 122 bits (307), Expect = 9e-27, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 59/111 (53%), Gaps = 1/111 (0%) Query: 129 LLFNSISTVSGKVERLISFDIAKRW-YLRDIAERMYTSESLIKKKLQDENTCFSKILLAS 187 L+ +I + + + ++ + + L IAER+ SE +K+ LQ + T F +I+ Sbjct: 240 LVKENIRDLQKSIRSELLYNSSNGYPTLPMIAERLNMSERTLKRHLQAQGTTFLQIVADV 299 Query: 188 RMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSP 238 R + A+++L+ +Q + IA GY + FI F++ +G TP Q+ + S Sbjct: 300 RFTEAKKMLQHKQYSIQDIASIVGYEEATNFIRAFKKTFGETPSQYRKRSQ 350 >UniRef50_A8H057 Transcriptional regulator, AraC family n=2 Tax=Shewanella RepID=A8H057_SHEPA Length = 344 Score = 122 bits (307), Expect = 9e-27, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 3/118 (2%) Query: 123 KKELIPLLFNSIST--VSGKVERLISFDIAKRWYLRD-IAERMYTSESLIKKKLQDENTC 179 E I F SI + S +V + IS + RD IA+ + S +++KL++E T Sbjct: 224 NDEAIQAYFQSIVSQPFSQRVSKEISIAMTLGNPDRDAIAKAFHMSSRNLQRKLREEGTS 283 Query: 180 FSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 FS+ + R +A++ L Q+ + IA + G+ S F F+++YGV+P Q+ Q + Sbjct: 284 FSEQVEQLRKDLAQKYLATPQLSMLEIAFRLGFKDPSNFTRAFKRWYGVSPLQYRQKN 341 >UniRef50_C3K2A2 Putative putative AraC-family regulatory protein n=1 Tax=Pseudomonas fluorescens SBW25 RepID=C3K2A2_PSEFS Length = 384 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 44/210 (20%), Positives = 85/210 (40%), Gaps = 10/210 (4%) Query: 30 ILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMP 89 +L L +L + L + EL + L + + + + Sbjct: 175 VLGLAPDLREFLLTRDMSAAALLLKELGGNDF------SLSRFCLSKQPPPIPDNVKVLG 228 Query: 90 LVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFN---SISTVSGKVERLIS 146 + + N N LS L + S +++ L + + ++ V+ ++ Sbjct: 229 CAPSYAANSNSLAFNRSFLSLPLPQANAVTVSMCEQMCTQLMQRRIAHAGMTALVQHYLN 288 Query: 147 FDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTI 206 L I+E ++ S +K++L++E T F K+L R A LL+ L I Sbjct: 289 TPDNGMPDLSSISELLHVSPRTLKRRLKEEGTTFRKLLADVRSRNAINLLKDGH-NLTEI 347 Query: 207 AEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 AE+ G+S S F F++++G++P QF+Q Sbjct: 348 AERLGFSDLSSFSQAFKRWHGISPSQFSQQ 377 >UniRef50_B4X5H8 Transcriptional regulator, AraC family protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4X5H8_9GAMM Length = 358 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 67/139 (48%), Gaps = 6/139 (4%) Query: 98 FNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFN-SISTVSGKVERLISFDIA-KRWYL 155 F+ +L++ + L+ SH+K L L + ++ +V+ I +A Sbjct: 217 FDREQAAQKLLTHNMMLTQ----SHEKMLDEYLSRVDQNDLANRVKCRIQDKLALGSPTQ 272 Query: 156 RDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSST 215 DIA + S +++KL ++ T F IL +R +A +E R + L IA G+SS Sbjct: 273 ADIASTLGMSLRNLQRKLSEQGTSFKDILEQTRRKLALEYIEQRHLTLGEIAYLVGFSSA 332 Query: 216 SYFINTFRQYYGVTPHQFA 234 + F F+++ GV+P +F Sbjct: 333 ANFNRAFKRWTGVSPGEFR 351 >UniRef50_C5T089 Transcriptional regulator, AraC family n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T089_ACIDE Length = 302 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 61/116 (52%), Gaps = 1/116 (0%) Query: 121 SHKKELIPLLFNSISTVSGKVERLISFDIAK-RWYLRDIAERMYTSESLIKKKLQDENTC 179 +H ++L+ + + +S +V R ++ +A L+ +A+R++ SE ++++L TC Sbjct: 184 AHAEQLLAVHVPAHENISAQVRRQLADGMANGPITLKSVAQRLHLSERSLQRRLDAAGTC 243 Query: 180 FSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 F+K++ R +A R + ++ L +A G++ S F F+ + G TP + Sbjct: 244 FAKLVDEVRHELAMRYIADERLTLGEVAYLLGFAEPSPFHRAFKCWTGTTPAAVRR 299 >UniRef50_B2HYH2 AraC-type DNA-binding domain-containing protein n=16 Tax=Acinetobacter RepID=B2HYH2_ACIBC Length = 336 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 67/140 (47%), Gaps = 3/140 (2%) Query: 97 SFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKR-WYL 155 +F ++ PI + L + + L+ F + ++++ ++ ++ I + L Sbjct: 194 TFAADYLDLPIRQDEKTLEEFLKAAPAQLLVK--FKNTNSLTSRIREVLKSQIGEEMPTL 251 Query: 156 RDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSST 215 D+A +Y S ++++L E + + A R A LL ++ L +A++ G+S T Sbjct: 252 NDVASMLYLSPQTLRRRLAAEGKSYQGVKDALRRDAAIHLLLNPELTLEDVAQQVGFSET 311 Query: 216 SYFINTFRQYYGVTPHQFAQ 235 S F F+++ GVTP + Q Sbjct: 312 STFHRAFKKWTGVTPGLYRQ 331 >UniRef50_D2YK24 Type 4 prepilin-like protein leader peptide-processing enzyme n=1 Tax=Vibrio mimicus VM573 RepID=D2YK24_VIBMI Length = 533 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 48/220 (21%), Positives = 106/220 (48%), Gaps = 11/220 (5%) Query: 22 KISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCH-YLQNIRQ------LPRNLGL 74 +++ SI+LL+KN F+ S +++ +T+ ++++++ + RNL Sbjct: 50 SYEINSSSIILLKKNSIQRFSLTSLSDENINVSVITISDSFIRSLKSYILGDLMIRNLYS 109 Query: 75 HSKDRLLIN-QSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNS 133 +KD LL N + + +++ + + F E + L ++ S KK + + Sbjct: 110 ENKDLLLWNCEHNDIAVLSEVVNGFREINYSDEFLK--VFFSGFFSKVEKKYNSIFITDD 167 Query: 134 ISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMAR 193 + + K+ L+ DI + W DI + T+ ++KK+L+ F +++ + R+S + Sbjct: 168 LDAM-EKISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVKFRELINSIRISYSI 226 Query: 194 RLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 L++ + + IA + G++S SYF F+ V P ++ Sbjct: 227 SLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEY 266 >UniRef50_D2TIS0 Transcriptional regulator of virulence RegA n=5 Tax=Enterobacteriaceae RepID=D2TIS0_CITRO Length = 276 Score = 121 bits (305), Expect = 1e-26, Method: Composition-based stats. Identities = 63/240 (26%), Positives = 116/240 (48%), Gaps = 12/240 (5%) Query: 3 HVCSVILIR--RSFDIYHEQQKISLHNESILLLEKNLADDFAF------CSPDTRRLDID 54 + C++I +R + + Q +++ ES+ +EKN D A + +D D Sbjct: 32 YNCAIIHLRDAQLLIRTKDGQTLNIPPESLCYVEKNTVMDVALKVLGSGVPYEVYHVDSD 91 Query: 55 ELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYL 114 L + L H++ ++ T IF S V L + Sbjct: 92 VLRCICKVMEPLLLDPQRVNHTRRKIFTCAVDETD--TRIFKRLTGSNVPQHRLVYKITY 149 Query: 115 SCLSMFSHKKELI-PLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKL 173 LS + + L+ L ++ +T + K++ +I D+++ W L D+A ++ SE I+KKL Sbjct: 150 -LLSKVNDIESLVYSLSVSTDTTFTEKLKVIIEADLSRSWRLVDLANILHMSEVSIRKKL 208 Query: 174 QDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 + E+ F+ ++L RM A +L+ +++IA + GY+STSYFI F++++G+TP QF Sbjct: 209 EKESNNFNALVLDIRMYHAAKLITTSDKHINSIANEVGYTSTSYFIRNFKEFFGITPKQF 268 >UniRef50_B2HXY7 AraC-type DNA-binding domain-containing protein n=10 Tax=Acinetobacter RepID=B2HXY7_ACIBC Length = 344 Score = 121 bits (305), Expect = 1e-26, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 67/134 (50%), Gaps = 2/134 (1%) Query: 105 SPILSNMLYLSCLSMFSHKKELIPLLFNS--ISTVSGKVERLISFDIAKRWYLRDIAERM 162 P+L+ L+ L KK++ L S + +S +++L+ + ++ +A+ M Sbjct: 201 QPVLTADPMLAPLLKAQCKKDIDKLKLRSGWKAEISQVIKKLLINSQGEILKVKQVAQMM 260 Query: 163 YTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTF 222 SE +++ L ENT FS ++ +R A+ LL+ + + +A GY+ T +F F Sbjct: 261 NMSERSLQRYLAIENTSFSALVDLTRKQYAQDLLQNSSMSIEAVALSLGYADTPHFTRAF 320 Query: 223 RQYYGVTPHQFAQH 236 +++ GVTP + Sbjct: 321 KRWMGVTPKYYQTQ 334 >UniRef50_B4WXJ1 Transcriptional regulator, AraC family protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4WXJ1_9GAMM Length = 331 Score = 121 bits (305), Expect = 1e-26, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 1/112 (0%) Query: 125 ELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKIL 184 E + TVS +V L+ K L +A++++ S + +KL+ ENT F ++ Sbjct: 221 EARQEALRNRGTVSDQVLALLHQHHGKA-SLDTVADQLHMSPRTLIRKLKQENTRFQQLR 279 Query: 185 LASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 + A +LL L + +AE GY+ + F F++++G TP F + Sbjct: 280 DQTLSRRAAQLLGLPHYTVAAVAEDLGYTDVASFRRAFQRWFGTTPGSFRRE 331 >UniRef50_B7V3C5 Probable transcriptional regulator n=7 Tax=Pseudomonas aeruginosa RepID=B7V3C5_PSEA8 Length = 357 Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 51/120 (42%) Query: 115 SCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQ 174 + H + + LL + +V + + L ++A R++ S +K+ L Sbjct: 214 ALRRAREHCERELALLDAGRRDICARVRLELERQEQRFPNLEEVAARLHLSSRSLKRHLH 273 Query: 175 DENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFA 234 D T F ++L +R A RLL ++ L IA GYS + F F+++ G P Sbjct: 274 DAGTSFRQLLGQARQRQALRLLRRPEVSLQRIALYLGYSDPTNFTRAFKRWTGEPPSDTR 333 >UniRef50_C4UFJ5 Uncharacterized HTH-type transcriptional regulator ybcM n=1 Tax=Yersinia ruckeri ATCC 29473 RepID=C4UFJ5_YERRU Length = 275 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 31/107 (28%), Positives = 52/107 (48%) Query: 129 LLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASR 188 L +S +TV+ + + L+ + RW R +AE+++ S S + L E F +IL R Sbjct: 151 FLDSSDNTVTARCQDLLILSPSARWSARTVAEQLHMSVSTFHRHLAAEGGSFQQILDDVR 210 Query: 189 MSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 + A ++ P+ IA GY S F + F++ Y +TP Q Sbjct: 211 LGNALNAIQTTSKPIGEIARDNGYQCPSRFTSRFQKRYQITPRALRQ 257 >UniRef50_B7RUG5 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RUG5_9GAMM Length = 187 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 65/137 (47%), Gaps = 2/137 (1%) Query: 98 FNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRD 157 + + + P+++ L+ ++ + L + SIS G V++++ + Sbjct: 47 WYRADILEPLVTGDPELARVNDEQTQAYLDSFVVQSISR--GVVDKIVEHLPDGPPNQQQ 104 Query: 158 IAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSY 217 IA+ ++ S +++KL+DE T F +L +R+ +AR+ L + A G+S S Sbjct: 105 IAQALHVSNRTLQRKLKDEGTSFMDLLQDTRLQLARKYLSHPNRSVVETAYMLGFSEPST 164 Query: 218 FINTFRQYYGVTPHQFA 234 F F+++ GV P F Sbjct: 165 FSRAFKRWTGVAPADFR 181 >UniRef50_A9GN71 Tra n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GN71_SORC5 Length = 329 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 94/236 (39%), Gaps = 14/236 (5%) Query: 19 EQQKISLHNESILLLEKNLADDFAFCSPDTRRL----------DIDELTVCHYLQNIRQL 68 ++ ILL+ + + + R ++DE Y Q Sbjct: 80 GNTRLVAREGQILLVPQGIPLELVNEPDPERGAYRSFTIELLSEVDERLQRRYPTLCVQR 139 Query: 69 PRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIP 128 + LL + P + + + ++ G ++ ++ + L L++ +E + Sbjct: 140 GLGGFEADRPHLLRSAMPSIQALIHLVNTLLLPGAHALLIEHRLEDLILTLLLQHREQLD 199 Query: 129 LLFNSISTV----SGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKIL 184 + ST+ + V L+ D A+ W ++A + S++ ++++L + F +L Sbjct: 200 EARAASSTLALDPTLAVRALVRRDPARPWAAPEVARALGVSDATLRRRLGAKGVSFRALL 259 Query: 185 LASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGT 240 R+ +A+ LL + + +A CGY S S F FR+ GV+P ++ + Sbjct: 260 WKERLDLAKGLLRSGRHGVLEVATACGYDSASRFAEQFRRSEGVSPSEYRARHRAS 315 >UniRef50_C4G4K9 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G4K9_ABIDE Length = 523 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 70/149 (46%), Gaps = 9/149 (6%) Query: 96 DSFNESGVNSPILSNMLYLSCLSMFSHK-KELIPLLFNS------ISTVSGKVERLISFD 148 DS + + +++ LS + CL S K+ FNS S ++ KV + I + Sbjct: 373 DSIDFADISAASLSAIGEACCLEEMSECLKDAAKFYFNSKDSKSQYSQIADKVTKYIIDN 432 Query: 149 IA-KRWYLRDIAERMYTSESLIKKKLQD-ENTCFSKILLASRMSMARRLLELRQIPLHTI 206 + +R + IA ++Y S + + + ++ + R+ A+ LL + PL +I Sbjct: 433 YSDERLSISQIAGKIYLSPNYLSLLFKKDTGKTINQFITEVRIEKAKALLRKDRTPLTSI 492 Query: 207 AEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 AEK GY +YF F++ G+TP F + Sbjct: 493 AEKIGYHDANYFSKAFKKETGMTPKAFRE 521 >UniRef50_B2I0Q2 AraC-type DNA-binding domain-containing protein n=4 Tax=Acinetobacter RepID=B2I0Q2_ACIBC Length = 270 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 87/229 (37%), Gaps = 6/229 (2%) Query: 7 VILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIR 66 +I++ F + + I S + L + + D L + ++ Sbjct: 43 LIIVLSGFKELGKTENIKCVAGSFIFLANSSSIDMRNIPDQEEYF---ALLIEFDFEDFN 99 Query: 67 QLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKEL 126 LP+N G + L +A+ + S V P L + + Sbjct: 100 DLPQNTGTSQN---YVQGQLNPLLESALHQFIDFSLVAPPSAFKFRKRELLELIYYSGYT 156 Query: 127 IPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLA 186 N ++S +V+ LIS+ ++ IA +++ S S +++KL+ E I Sbjct: 157 AIAKLNMNKSLSERVQTLISYHLSTELTAEFIAAQLFMSSSTLRRKLKSEGNSIQDIRNR 216 Query: 187 SRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 R+ L++ + IA +CGY S S F F+ +G+TP + + Sbjct: 217 VRLGHGLHLIQTTNNSIGNIAFECGYQSQSRFTEQFKNLFGITPRELRK 265 >UniRef50_A4VG28 Transcriptional regulator, AraC family n=1 Tax=Pseudomonas stutzeri A1501 RepID=A4VG28_PSEU5 Length = 312 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 1/103 (0%) Query: 134 ISTVSGKVER-LISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMA 192 VS +V + +I+ + + L IAER+ S + +KL +E T F ++ R +A Sbjct: 204 HEQVSLQVRKEIIALLSSDKLGLEHIAERLNMSGRNLHRKLAEEGTSFKELQDEIRQDLA 263 Query: 193 RRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 R L + + L+ IA G+ S F F+++ G +P Q+ + Sbjct: 264 LRYLGMSGMSLNEIAFNLGFIDQSSFNRAFKRWTGGSPGQYRR 306 >UniRef50_B8HZ47 Transcriptional regulator, AraC family n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HZ47_CYAP4 Length = 333 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 52/200 (26%), Positives = 87/200 (43%), Gaps = 19/200 (9%) Query: 41 FAFCSPDTRRLDIDELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNE 100 F S LDI LQ Q P+ + + RL + PL NE Sbjct: 146 FVLLSRRLTGLDIVP------LQMGFQHPKPEDVSAYHRLFRS-----PLAFDH--PVNE 192 Query: 101 SGVNSPILSNMLYLSCLSMFS----HKKELIPLLFNSISTVSGKVERLISFDI-AKRWYL 155 +++ ++ N L + + S H +EL+ L S ++ V RL+S + L Sbjct: 193 MRLDAALIQNPLAQADPGLSSILDRHAEELLARLPQS-ESLLDSVNRLLSQALRGGDPSL 251 Query: 156 RDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSST 215 IA+++ + +++KLQ+ T + +L R ++ L QI + IA G+S T Sbjct: 252 VAIAQQLGYTPRTLQRKLQEAGTSYHSLLDEMRRELSIYYLREAQIAISEIAFLLGFSET 311 Query: 216 SYFINTFRQYYGVTPHQFAQ 235 S F FR++ GV+P F + Sbjct: 312 SAFHRAFRRWMGVSPGDFRR 331 >UniRef50_A6WTM9 Helix-turn-helix-domain containing protein AraC type n=7 Tax=Shewanella RepID=A6WTM9_SHEB8 Length = 252 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 52/242 (21%), Positives = 105/242 (43%), Gaps = 19/242 (7%) Query: 6 SVILIRRS--FDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQ 63 S + + + + H ++ + +ES+L+ + L A ++ + Y Sbjct: 16 SQVPVHQPSIIRVIHGEKSLLWQDESVLVGQGQLLLIPAGSHISF----VNRPFLGRYRA 71 Query: 64 NI----RQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILS-----NMLYL 114 LP+ + + D P+ V+ D + + S LS + YL Sbjct: 72 VQLLLPHDLPQGILSSTAD---WRDPMPVQNVSRAVDLAWNALLQSLSLSLADSVQLHYL 128 Query: 115 SCLSMFSHKKELIPLLF-NSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKL 173 + L + K + L+ ++ +V+ L+S A W +IA++++ S + +++KL Sbjct: 129 AALLLSLPDKRSVSWLYGHTQRSVTQAALALMSVSPAAPWQQEEIADKLHMSTASLRRKL 188 Query: 174 QDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 E+T F ++L+ R+S +L+ PL +A CGY S F F+Q +G+TP + Sbjct: 189 ALEDTSFRQLLVEVRLSHGLAMLQNSGEPLLQVALACGYQSAEKFSLRFKQQFGLTPAAY 248 Query: 234 AQ 235 + Sbjct: 249 RR 250 >UniRef50_C9KMM6 Putative AraC-type DNA-binding domain-containing protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KMM6_9FIRM Length = 241 Score = 121 bits (303), Expect = 2e-26, Method: Composition-based stats. Identities = 43/241 (17%), Positives = 98/241 (40%), Gaps = 13/241 (5%) Query: 2 THVCSVILIRRSFDIY-HEQQKISLHNESILLLEKNLA-DDFAFCSPDTRRLDIDELTVC 59 H+C ++L+ + IY + ++ + ++++ D+F + I + Sbjct: 5 DHLCELLLVSQGAGIYMIDGRRYTAQKGNLIIYNSRTVHDEFGGSGSNLVTYCIAIGGLR 64 Query: 60 HYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSC--- 116 I LP + L + V ++FD+ + + ++N L ++ Sbjct: 65 -----IDGLPADHLLPDGYCPVQPLRQHFAEVQSLFDAIEKEAKSHAEIANYLTMALITK 119 Query: 117 LSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE 176 L+ F ++ L T++ + I + + L DIA +T+ + + E Sbjct: 120 LAAFLREEGLQE--EQQTPTLAARARAFIDKNYKEAIRLGDIATATHTNAYYLSHLFKAE 177 Query: 177 -NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 K ++ R+ A+ LL + + IA + GY++++YF N F+ +TP ++ + Sbjct: 178 IGLSPMKYVILRRIGEAQNLLINTDMTITQIAAQVGYNNSNYFQNVFKGALDMTPGEYRR 237 Query: 236 H 236 Sbjct: 238 K 238 >UniRef50_A3K790 Putative transcriptional regulator protein (AraC family) n=1 Tax=Sagittula stellata E-37 RepID=A3K790_9RHOB Length = 341 Score = 121 bits (303), Expect = 2e-26, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 62/126 (49%), Gaps = 2/126 (1%) Query: 115 SCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQ 174 + +++ H +L+ ++I T + +V ++++ L + ++ S + + ++L+ Sbjct: 215 NLVALMQHYIQLLAQRSHAIGTWTEEVRQVLAGQPGGA-ELETVCRQLGVSPATLGRRLR 273 Query: 175 DENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFA 234 DE T F + R+ A R+L ++ + +A + GY T+ F FR G TP + Sbjct: 274 DEGTTFRDLGRRHRIERAARMLSETRLSVLEVALRAGYGETASFTRAFRDVMGPTPRNWR 333 Query: 235 QH-SPG 239 + SPG Sbjct: 334 NNPSPG 339 >UniRef50_C5EIB6 Transcriptional regulator n=3 Tax=Clostridiales RepID=C5EIB6_9FIRM Length = 320 Score = 121 bits (303), Expect = 2e-26, Method: Composition-based stats. Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 3/152 (1%) Query: 83 NQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVE 142 + L+ + + G ++ + L L+ L + + + +S ++ Sbjct: 169 DDCNIRTLLEMMVIEYAHKGEDTQDILKPLALAFLMQVARQYTFANQRPPA-DRLSDRIV 227 Query: 143 RLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQI 201 + IS + + L+DIA R + I L E FS+ILL+ RM A LL+ + Sbjct: 228 QYISEH-SDKVTLKDIAARFSYHPNYISTLLHRELGKSFSEILLSQRMERAVILLKGTDL 286 Query: 202 PLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 ++ IA GYS++S F FR+YYGV+P ++ Sbjct: 287 TINEIALMLGYSNSSNFYKAFREYYGVSPREY 318 >UniRef50_A5F384 TCP pilus virulence regulatory protein n=21 Tax=Vibrio cholerae RepID=TCPN_VIBC3 Length = 276 Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats. Identities = 48/220 (21%), Positives = 106/220 (48%), Gaps = 11/220 (5%) Query: 22 KISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCH-YLQNIRQ------LPRNLGL 74 +++ SI+LL+KN F+ S +++ +T+ ++++++ + RNL Sbjct: 50 SYEINSSSIILLKKNSIQRFSLTSLSDENINVSVITISDSFIRSLKSYILGDLMIRNLYS 109 Query: 75 HSKDRLLIN-QSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNS 133 +KD LL N + + +++ + + F E + L ++ S KK + + Sbjct: 110 ENKDLLLWNCEHNDIAVLSEVVNGFREINYSDEFLK--VFFSGFFSKVEKKYNSIFITDD 167 Query: 134 ISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMAR 193 + + K+ L+ DI + W DI + T+ ++KK+L+ F +++ + R+S + Sbjct: 168 LDAM-EKISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVKFRELINSIRISYSI 226 Query: 194 RLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 L++ + + IA + G++S SYF F+ V P ++ Sbjct: 227 SLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEY 266 >UniRef50_C4V3H9 Response regulator n=2 Tax=Selenomonas RepID=C4V3H9_9FIRM Length = 255 Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 44/92 (47%) Query: 143 RLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIP 202 R + IA+ +R++A+ + S S + K T FS L R+ A LL Sbjct: 159 RHMEEHIAEPITVREVADELGLSVSYLHKLFSRCGTSFSSYLTECRLRRAGHLLRESDAK 218 Query: 203 LHTIAEKCGYSSTSYFINTFRQYYGVTPHQFA 234 ++ +A CGY T YF F+++ G+ P ++ Sbjct: 219 VYAVAAACGYQDTRYFSKIFQKHMGMKPTEYR 250 >UniRef50_C5ETL2 Two component transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ETL2_9FIRM Length = 517 Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats. Identities = 40/213 (18%), Positives = 79/213 (37%), Gaps = 19/213 (8%) Query: 43 FCSPDTRRLDIDELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTA---IFDSFN 99 F P +DI +++ + + +D Q + A + D+ Sbjct: 305 FHFPADISMDIKNALCRGLPEDVGKSGELFIRYMEDGPYKEQEIRQAYLKAVYLLLDTIR 364 Query: 100 E-------SGVNSPILSN-MLYLSCLSMFSHKKELIPLLFNSI-------STVSGKVERL 144 E N+ +LS ++ M ++ + LL + + + Sbjct: 365 EIDGTAYTQMQNADLLSKCTEAVTLREMEQSYRDGLALLCSPRRMKEDISNYTIKRAINY 424 Query: 145 ISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPL 203 I + L ++A R+ + + E FS L R+S A+RLL+ + + Sbjct: 425 IREHYKEGISLEEVAGRLGITPEYLSTLFNREMGENFSTFLRKFRISHAKRLLKGTDMKV 484 Query: 204 HTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 + IAE+ GY+ YF F++ G++P + Q Sbjct: 485 YEIAEEVGYTDPKYFARVFKEELGISPGDYRQQ 517 >UniRef50_D1PMJ1 Transcriptional regulator, AraC family n=2 Tax=Ruminococcaceae RepID=D1PMJ1_9FIRM Length = 285 Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 63/152 (41%), Gaps = 4/152 (2%) Query: 86 PPMPLVTAIFDSFNESGVN---SPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVE 142 P + A+++ + G +++ LY+ + ++ +P + +S S Sbjct: 120 DPQAVREALYNIYLSRGPEPQCEALMTGYLYIFMAHLMKEARDAMPNVGSSSSQYVLSAI 179 Query: 143 RLISFDIAKRWYLRDIAERMYTSESLIKKKL-QDENTCFSKILLASRMSMARRLLELRQI 201 + I F+ + + DIA+ + S S + + + L R+S A LL+ + Sbjct: 180 KYIQFNYSHDISVDDIAKAVGVSRSHLYRVFMANVGQSPIDYLTNYRISEACSLLKNSNL 239 Query: 202 PLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 + IA G+ YF F++ GV P ++ Sbjct: 240 SIAEIAVSVGFFDQFYFSRVFKKVKGVPPSKY 271 >UniRef50_B9K0J1 AraC-type DNA-binding domain-containing protein n=1 Tax=Agrobacterium vitis S4 RepID=B9K0J1_AGRVS Length = 343 Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 4/120 (3%) Query: 115 SCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQ 174 L ++ + + + VER++ + R ++ +A + SE ++++L Sbjct: 222 QLLEFMAYNRA----RSREAAEIIESVERVLRQKLHSRMHISKVARALGMSERTLRRRLA 277 Query: 175 DENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFA 234 + F +L R + LL R + + IA G+S F FR++ G TP Sbjct: 278 ESGVSFQSLLDDLRKNRTLELLGNRNMSVEQIAFAVGFSDPHNFRRAFRRWTGTTPGALR 337 >UniRef50_A1U2D8 Transcriptional regulator, AraC family n=2 Tax=Marinobacter RepID=A1U2D8_MARAV Length = 343 Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 56/107 (52%), Gaps = 1/107 (0%) Query: 137 VSGKVERLISFDI-AKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRL 195 + G+VER+I+ + + L +AER+ ++ +L + T F+++L R +AR+L Sbjct: 232 IVGQVERIIAELLDSGEVTLDAVAERLGIKPRTLRTRLTEAETSFNQVLADFRYRLARQL 291 Query: 196 LELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGTFS 242 L + I G+S S F F+++ G+TP ++ + + G + Sbjct: 292 LATTDESIDEIVYLTGFSEPSTFYRAFKRWSGMTPIEYRKTAQGKDA 338 >UniRef50_B0ABU8 Putative uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0ABU8_9CLOT Length = 412 Score = 120 bits (302), Expect = 3e-26, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 57/157 (36%), Gaps = 1/157 (0%) Query: 82 INQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKV 141 I+ + + F N + ++ Y + S + + + + K Sbjct: 256 IDGGADSNTIIDLNSKFLYKISNIKNIEDLSYWVIHMLDSFTQNVFNFNESKNPVLIQKC 315 Query: 142 ERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQ 200 I+ + L IA ++ + S + E FS L R+ ++ LL+ Sbjct: 316 ISYINEHYNEDINLETIANIVHLNPSYFSSIFKKEVGVSFSNYLNKIRIEQSKLLLKNTD 375 Query: 201 IPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 + IA + G+ SYF F+ +TP Q+ Q+ Sbjct: 376 SSIVEIALEVGFEDQSYFSKVFKNLTKMTPKQYRQNG 412 >UniRef50_Q65NG7 Putative uncharacterized protein n=1 Tax=Bacillus licheniformis ATCC 14580 RepID=Q65NG7_BACLD Length = 400 Score = 120 bits (302), Expect = 3e-26, Method: Composition-based stats. Identities = 42/207 (20%), Positives = 85/207 (41%), Gaps = 20/207 (9%) Query: 33 LEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVT 92 L++ + F D D L +++ + + + ++ Sbjct: 203 LKEKVERFFINERDKAVFFDGDRLIAACLWRSVTEAEQRALAE------MIKAELQASAA 256 Query: 93 AIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKR 152 F E+G ++P + H ++ + FN IS V + + + +R Sbjct: 257 VCFAKLAENGRSAPQC-----------YQHCRQQVSKAFN-ISPVVIRAKEYMQKHFTER 304 Query: 153 -WYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKC 210 + L+ +A+ + S + + ++ E F ++L RM A LLE + +H IAE+ Sbjct: 305 EFSLKQMADALQVSSVYLSRMMKKELGVTFVQLLTEMRMDQAVHLLETTPLSIHDIAEQT 364 Query: 211 GYSSTSYFINTFRQYYGVTPHQFAQHS 237 GY + YF F++ GV+P+Q+ + S Sbjct: 365 GYDTQHYFSTVFKKTMGVSPNQYRRMS 391 >UniRef50_A1ZQH8 Transcriptional regulator, AraC family protein n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZQH8_9SPHI Length = 355 Score = 120 bits (302), Expect = 3e-26, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 121 SHKKELI--PLLFNSISTVSGKVERLI-SFDIAKRWYLRDIAERMYTSESLIKKKLQDEN 177 H ++L+ LL KV ++I + I L +A ++ + +++KL+ E Sbjct: 233 EHFEQLVKEDLLTKKPQEWVKKVRQVILNQPINHLPSLHQVAHALHLTPRSLQRKLKHEG 292 Query: 178 TCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 F I + A LL Q+ + +A GY+ S F F+++ G TP ++ Q Sbjct: 293 HTFLVIANDIQQQRAMHLLRQTQLNVSEVAYMLGYAEPSVFRRAFKRWTGKTPKEYQQSF 352 Query: 238 P 238 P Sbjct: 353 P 353 >UniRef50_Q2SPI7 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SPI7_HAHCH Length = 333 Score = 120 bits (302), Expect = 3e-26, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 1/123 (0%) Query: 116 CLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAK-RWYLRDIAERMYTSESLIKKKLQ 174 + + E + + TVS KV+ +++ +++ +AE+M S + +KL+ Sbjct: 211 LHQALTRQVEALLQKLSLRRTVSHKVKAIVAKRLSRGDIEAEKVAEKMNMSRHTLYRKLK 270 Query: 175 DENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFA 234 E F +++ R A L+ + L IA G+S S F F+++ G +P + Sbjct: 271 QEGVSFQELVEQVRKDKALDYLQKGKYSLSEIAFLLGFSELSAFSRAFKRWTGESPASYR 330 Query: 235 QHS 237 Sbjct: 331 SQQ 333 >UniRef50_B5JY44 Transcriptional regulator, AraC family, putative n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JY44_9GAMM Length = 337 Score = 120 bits (302), Expect = 4e-26, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Query: 120 FSHKKELIPLLFNSISTVSGKVERLISFDIAKRW-YLRDIAERMYTSESLIKKKLQDENT 178 F+ K +++ S S+++ +V + I I ++DIA + ++ ++++L++E T Sbjct: 217 FAEKAQVLLSRLPSDSSLAAEVVQAIESKIGYAVFSMQDIAGELNMTQRTLQRRLKEEGT 276 Query: 179 CFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 ++++ + R A L + + TIA G+S + F F+++ G++P ++ + Sbjct: 277 SYAQLRDSVRFRFAEEYLRDSSMDMATIAANLGFSEPANFYAAFKRWQGMSPGEYRKRF 335 >UniRef50_C4L2Y3 Two component transcriptional regulator, AraC family n=1 Tax=Exiguobacterium sp. AT1b RepID=C4L2Y3_EXISA Length = 236 Score = 120 bits (302), Expect = 4e-26, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 1/114 (0%) Query: 124 KELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSK 182 + L ++ S ++ I A+ L+ ++ER Y S I ++ + + S+ Sbjct: 118 RALADVVKESSEDPIAQIGTYIEQHFAEELSLQGMSERFYLSREYISRRFKQQYGVNLSE 177 Query: 183 ILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 +L RM+ A+RLLE + ++ +A+ G+S YF F++ GVTP++F + Sbjct: 178 YVLTIRMNEAKRLLETSRQRIYEVAQAVGFSDDKYFRKVFKKQVGVTPNEFREQ 231 >UniRef50_C6IYL2 Two component transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IYL2_9BACL Length = 530 Score = 120 bits (302), Expect = 4e-26, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 51/106 (48%), Gaps = 1/106 (0%) Query: 132 NSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQ-DENTCFSKILLASRMS 190 ++ ++ +I + L IAE+ + + S + + F + L RM+ Sbjct: 421 REEPSIVEAMKEMIELNYMNDLNLSQIAEQYHYNLSYLSDLFKTKTGKSFLQYLTDVRMN 480 Query: 191 MARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 A +LL+ + L IAE G+S+ SYF F++ +G++P ++ Q Sbjct: 481 KAVQLLDETPLSLSDIAELTGFSNASYFSTKFKKVFGISPSEYRQK 526 >UniRef50_B1JCK3 Transcriptional regulator, AraC family n=16 Tax=Pseudomonas RepID=B1JCK3_PSEPW Length = 353 Score = 120 bits (301), Expect = 4e-26, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 52/103 (50%), Gaps = 1/103 (0%) Query: 133 SISTVSGKVERLI-SFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSM 191 S S V+ +V +++ +A+ ++ S+ ++++LQ+E T F +L +R + Sbjct: 228 SESRVTHRVRQVLCRILPQGEPKRETLAQALHLSQRTLQRRLQEEGTSFQALLDDTRREL 287 Query: 192 ARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFA 234 A + L + L A G++ S F FR+++ VTP ++ Sbjct: 288 AEQYLAQPGMTLLETAYLLGFADPSNFYRAFRRWFDVTPSEYR 330 >UniRef50_UPI0001C374E0 transcriptional regulator, AraC family protein n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C374E0 Length = 267 Score = 120 bits (301), Expect = 4e-26, Method: Composition-based stats. Identities = 44/241 (18%), Positives = 99/241 (41%), Gaps = 12/241 (4%) Query: 7 VILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVC----HYL 62 ++ R + ++ +L+ S++L F S R D+ L + Y+ Sbjct: 26 LLFFRTPAIFTVKGKETTLNGHSVMLCSSGSLRSFRPASSKGIRYDMVVLNMNSSDKQYV 85 Query: 63 QNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSH 122 +++ +P + + D +I+ + +++ ++S S + + L +++ + Sbjct: 86 ESM-SIPFDTPIELSDDYVISA--MLRAMSSHI--MHKSLYQSEFMELSMRLILIAISEN 140 Query: 123 KKELIPLLFNSISTVSG--KVERLISFDIAKRWYLRDIAERMYTSESLIKKK-LQDENTC 179 +L P +I + + I + W +I+E M S + L Sbjct: 141 CHKLPPGKVETIPRYNELKAIRDAIYDEPMTHWSAEEISEDMGISRPYFHRLYLSAFGVT 200 Query: 180 FSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPG 239 + ++ SR+ A LL + + +AE CGY S +YF+ F+Q+ G TP ++ + + Sbjct: 201 CRQDIIESRLIYASELLRTTDMSISAVAETCGYDSDAYFMRQFKQHKGCTPSEYRRRAVS 260 Query: 240 T 240 Sbjct: 261 N 261 >UniRef50_C4Z204 AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR n=2 Tax=Clostridiales RepID=C4Z204_EUBE2 Length = 277 Score = 120 bits (301), Expect = 4e-26, Method: Composition-based stats. Identities = 33/230 (14%), Positives = 80/230 (34%), Gaps = 11/230 (4%) Query: 17 YHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRNLGLHS 76 + + ++++ + I + I+ + + Sbjct: 46 FIDHNIYKFGKGDLVIVPSGCLHR-TTYNGKGMHERIVISFRNEATEWIQNQTGKELMEN 104 Query: 77 KDRLLI------NQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLL 130 + + + + L+ + + SP + + L K + Sbjct: 105 CMKPGVVNIPEKRRDYVVALLDKLIFENDSPDELSPAFIKVGLIELLLFIIRCKNYEENV 164 Query: 131 FNSI---STVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQ-DENTCFSKILLA 186 I + + +V I A L +A++ S S + KK + F + ++ Sbjct: 165 IKEIDVDNRIIQEVATYIYEHYADNLSLEYVADKFNLSRSYLSKKFKTATGFGFKEYIIN 224 Query: 187 SRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 R+ A LL + IA +CG++ ++YF + FR+ G++PH++ ++ Sbjct: 225 VRIQNACNLLLETNKSITDIAFECGFNDSNYFGDAFRKAKGISPHKYRKN 274 >UniRef50_Q2SUK1 Transcriptional regulator, AraC family n=37 Tax=Burkholderia RepID=Q2SUK1_BURTA Length = 347 Score = 120 bits (301), Expect = 4e-26, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 2/133 (1%) Query: 103 VNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERM 162 ++ PI + + + + + + EL L ++ +V L+ L +A + Sbjct: 216 LDEPIRTANAHTAQMIVQQCEAELARL--GYAESIVERVRNLLIRGNNGYPSLDALAREL 273 Query: 163 YTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTF 222 + SE +K+KL D +S +L R+ A RLLE + + IA + GY+ + F F Sbjct: 274 HLSERTLKRKLSDYGATYSALLDEIRLRDALRLLEGTHLTVEEIAARVGYTDRANFSRAF 333 Query: 223 RQYYGVTPHQFAQ 235 R++ G +P + Sbjct: 334 RRWTGTSPSSRRR 346 >UniRef50_A3M7C3 Putative transcriptional regulator (AraC family) n=2 Tax=Acinetobacter baumannii ATCC 17978 RepID=A3M7C3_ACIBT Length = 339 Score = 120 bits (301), Expect = 4e-26, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 69/140 (49%), Gaps = 2/140 (1%) Query: 98 FNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFN--SISTVSGKVERLISFDIAKRWYL 155 F+E+ + P++ + L+ K +L L ++ V L+ ++ + + Sbjct: 194 FSENFLALPLIMADPLAARLAREQCKHDLNKLAAKRGEKHPLTALVRELLFDEVEGFFKM 253 Query: 156 RDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSST 215 +D+AE+++ +E ++++L E F +L R A++LL + + I+EK GYS Sbjct: 254 KDVAEKLHLTERTLQRQLAKEGVTFQILLDQVRERHAKKLLNHHEYSISYISEKLGYSEV 313 Query: 216 SYFINTFRQYYGVTPHQFAQ 235 ++F F+++ TP Q+ Sbjct: 314 THFTRAFKRWTNQTPKQYRN 333 >UniRef50_C5D8H7 Two component transcriptional regulator, AraC family n=3 Tax=Geobacillus RepID=C5D8H7_GEOSW Length = 515 Score = 120 bits (301), Expect = 4e-26, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 1/99 (1%) Query: 139 GKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLE 197 GK + I L ++AE + S K +D F + R++ A++ + Sbjct: 412 GKAKDYIDEHYHHPLTLEEVAEYVGISPYYFSKLFKDRFGMTFIDYVTEVRIARAKKEMA 471 Query: 198 LRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 L I GY+ +YF F+++ G++P ++ + Sbjct: 472 DPNKSLKEICFLVGYNDPNYFSRVFKKHTGMSPTEYRKK 510 >UniRef50_B4X114 Transcriptional regulator, AraC family protein n=2 Tax=Gammaproteobacteria RepID=B4X114_9GAMM Length = 358 Score = 120 bits (301), Expect = 4e-26, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 54/123 (43%) Query: 117 LSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE 176 LS + E L T+ +V L+ +AER++ + ++++LQ+ Sbjct: 234 LSQALAQCERESALMAPGDTLLRQVRELLVLGAHGYPAPEQLAERLHLTPRTLRRRLQER 293 Query: 177 NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 F +L +R +R LL + + I+E G++ + F F+ + G+TP Q+ Sbjct: 294 GQGFQSLLEEARHRDSRHLLASSDMEIQRISELLGFADPANFTRAFKGWMGMTPSQWRHQ 353 Query: 237 SPG 239 G Sbjct: 354 QAG 356 >UniRef50_B0K339 Response regulator receiver protein n=9 Tax=Thermoanaerobacterales RepID=B0K339_THEPX Length = 365 Score = 120 bits (301), Expect = 4e-26, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 71/167 (42%), Gaps = 18/167 (10%) Query: 88 MPLVTAIFDSFNESGVNSPIL-SNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVE---- 142 + LV I SF E G N+ IL +S S K++ + N I V V Sbjct: 197 LGLVAVITRSFIEIGENADILFKETDPWRQISELSTKEKFREWMRNIIEVVCEYVSLTKN 256 Query: 143 -----------RLISFDIAK-RWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRM 189 +LI + + L IAE++Y + + + + E FS L A R+ Sbjct: 257 SKNRKLIDEAIKLIQENYSDLNISLNSIAEKLYITPNYLSTLFKSEMGVTFSDYLTACRI 316 Query: 190 SMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 A+ LL+ ++ ++ +AE GY+ YF F+ G TP ++ + Sbjct: 317 EKAKELLKDVKVKIYEVAEAVGYTDQHYFSKVFKNITGFTPKEYREK 363 >UniRef50_A4XMI3 Two component transcriptional regulator, AraC family n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XMI3_CALS8 Length = 251 Score = 120 bits (301), Expect = 4e-26, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 56/116 (48%), Gaps = 1/116 (0%) Query: 121 SHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKL-QDENTC 179 ++++ L+ N V V ++ A++ L D+A ++ + + L + Sbjct: 125 NYRENEDTLIENCDGDVIKSVFDYLNKHYAQQITLNDVANYVHLHPVYLGRLLRKKVGKT 184 Query: 180 FSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 F +IL R+ A LL+ + + +AE G+S YF F++ YG+TP+++ + Sbjct: 185 FKEILTEVRLKKAISLLKNSSLKNYEVAEAVGFSDAQYFSQVFKKIYGITPNEWKK 240 >UniRef50_P43460 HTH-type transcriptional activator csvR n=12 Tax=Escherichia RepID=CSVR_ECOLX Length = 301 Score = 120 bits (301), Expect = 4e-26, Method: Composition-based stats. Identities = 48/145 (33%), Positives = 80/145 (55%), Gaps = 3/145 (2%) Query: 90 LVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLF-NSISTVSGKVERLISFD 148 L+ + + +S +S ++YL +S ++I L+ +SI+ + KV +I D Sbjct: 118 LLNVLREMMGHHNDDSSFISALIYL--ISKIKCNDKIIESLYMSSITFFTDKVRGVIEKD 175 Query: 149 IAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAE 208 ++++W L IA+ SE I+K+L+ E+T F++IL+ SRMS A LL + I+ Sbjct: 176 LSRKWTLAIIADVFNVSEITIRKRLESEDTNFNQILMQSRMSKAALLLLENSYQISQISN 235 Query: 209 KCGYSSTSYFINTFRQYYGVTPHQF 233 G SS SYFI F +++GVT F Sbjct: 236 MIGISSASYFIRIFNKHFGVTRSSF 260 >UniRef50_Q0VP70 Transcriptional regulator, AraC family n=2 Tax=Alcanivorax RepID=Q0VP70_ALCBS Length = 345 Score = 120 bits (301), Expect = 5e-26, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 2/128 (1%) Query: 114 LSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRW-YLRDIAERMYTSESLIKKK 172 L ++ +H + + L + +S +V++ I I +AER+ + + ++ Sbjct: 215 LLLSTLEAHAIQQLNQL-GVDTNLSQRVKQCIQDAIGHSLPRKETVAERLGMNVRTLHRR 273 Query: 173 LQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQ 232 L DE + K+L + R+ AR LL +P IA GYS F +F+++ +TP Q Sbjct: 274 LADEQQSWQKLLDSVRLQQARHLLTTTSLPQADIAAALGYSDIRSFQRSFKRHTTMTPGQ 333 Query: 233 FAQHSPGT 240 + T Sbjct: 334 YRNTPKDT 341 >UniRef50_C6PV52 Transcriptional regulator, AraC family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PV52_9CLOT Length = 314 Score = 120 bits (301), Expect = 5e-26, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 73/155 (47%), Gaps = 8/155 (5%) Query: 81 LINQSPPMPLVT-AIFDSFNESGVNSPILSNM-LYLSCLSMFSHKKELIPLLFNSISTVS 138 + SP L+ I + +++ + IL M + L+ + +K++ +P + +T+ Sbjct: 164 IPASSPIWQLLNVMILEYAHKTEDSQKILKPMVMSLAMYLSYEYKRQHLP----TGTTLI 219 Query: 139 GKVERLISFDIAKRWYLRDIAERMYTSESLIKKKL-QDENTCFSKILLASRMSMARRLLE 197 ++ I + L DIA I + L + FS +L SRM A+ LL+ Sbjct: 220 DRIMEYIESH-SDSVTLNDIASHFGYHPVYISRLLPEKTGKTFSALLAESRMRRAKLLLD 278 Query: 198 LRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQ 232 + + IA+ GYS++S F F++YYG +P Q Sbjct: 279 HTDLSIEKIADMLGYSNSSNFYKAFKRYYGTSPRQ 313 >UniRef50_UPI0001788C4E two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788C4E Length = 538 Score = 120 bits (300), Expect = 5e-26, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 1/114 (0%) Query: 125 ELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKI 183 ++ + + + + + + + L+ IA + + S I +K + E S Sbjct: 423 RVLTQIHSKDNHIIHDIAQYLEQHYHDEISLQQIAGKFFLSREYISRKFKQEFGVTLSDF 482 Query: 184 LLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 L R+ A+ LL QI + IAE GY YF F++ G TP+++ + Sbjct: 483 LGRIRIEKAKTLLLNPQIRIAQIAEMVGYQDEKYFSKVFKKMEGFTPNEYRKKH 536 >UniRef50_UPI0001745884 transcriptional regulator n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001745884 Length = 295 Score = 120 bits (300), Expect = 5e-26, Method: Composition-based stats. Identities = 44/250 (17%), Positives = 86/250 (34%), Gaps = 20/250 (8%) Query: 7 VILIRRSFDIYHEQQKI-SLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYL--- 62 ++L+++S I +L ++L+ NL + + + V +L Sbjct: 50 LVLVKKSQGYRIVGDNITNLSAGDLVLVGSNLPHLWHQDNTAGELEAVVVQFVADFLGRE 109 Query: 63 ---QNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSM 119 ++ + R L ++ L I + + D + P+ LS L Sbjct: 110 FAGRSDFEPVRQLMDKARRGLHITGD----VRDRVADRMSAMVGLGPLRRLAELLSILDD 165 Query: 120 FSHKKE--------LIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKK 171 +H P L +V + I + + +A S + Sbjct: 166 LAHSPGVAFLSSPGFAPQLGLGDQARVDRVMQFIHKHLCEPINRDQVAAIAALSPGAFSR 225 Query: 172 KLQ-DENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTP 230 + F L R+ A RLL + + +A CG+ + ++F F ++ GVTP Sbjct: 226 FFRSRTGRTFPAYLNELRLGRAARLLSTTDLRVVDVAADCGFRNLAHFNRLFLKWKGVTP 285 Query: 231 HQFAQHSPGT 240 +F + GT Sbjct: 286 SEFRKRLGGT 295 >UniRef50_A4SN34 Transcriptional regulator, AraC family n=2 Tax=Aeromonas RepID=A4SN34_AERS4 Length = 306 Score = 120 bits (300), Expect = 5e-26, Method: Composition-based stats. Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 7/170 (4%) Query: 77 KDRLLINQSPPMPLV-TAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSIS 135 +D+ I+ LV T + + G++ LS+ +++ L + H P L Sbjct: 135 EDKTFIDDPQASVLVQTQLMKLEWQHGIDRMALSHGVWMLMLHAYRHHTREAPGLPEVRG 194 Query: 136 TVS----GKVERLISFDIAKRWYLRDIAERMYTSESLIKKKL-QDENTCFSKILLASRMS 190 ++ +V+ + D+A+ L ++A++ SE + Q + LL R+ Sbjct: 195 GLAPGVIRRVQEYLQADLAEPVTLAELAQQASLSEYHFARMFGQSLGCPPHRYLLGLRLK 254 Query: 191 MARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGT 240 A++LL L +IA CG+SS ++F N FR+ +G+TP Q+ + Sbjct: 255 RAKQLLAGSD-SLASIAILCGFSSQAHFGNRFREAFGITPGQWRTQLSSS 303 >UniRef50_C6LLM9 Two-component response regulator n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LLM9_9FIRM Length = 516 Score = 120 bits (300), Expect = 5e-26, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 1/103 (0%) Query: 135 STVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMAR 193 S + +++R I A+ L +A+++Y S + + E ++ LL RM A+ Sbjct: 403 SRIVQEIKRYIQEHYAENINLNALADQVYLSPKYLSDLFKRETGENYTSYLLYVRMEHAK 462 Query: 194 RLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 + L + ++ +AE GY+S FI F++ GVTP ++ Sbjct: 463 KYLMQFDLKIYEVAELTGYASPKQFIRVFKKEVGVTPGEYRNQ 505 >UniRef50_Q0VLF5 Transcriptional regulator, AraC family n=2 Tax=Alcanivorax RepID=Q0VLF5_ALCBS Length = 336 Score = 120 bits (300), Expect = 5e-26, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 58/132 (43%), Gaps = 9/132 (6%) Query: 105 SPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYT 164 P L+ ML C + S ++GKV + + ++ L D+A + Sbjct: 213 DPALTRMLEQQCQQRMDTVES---------SGIAGKVRQKLLGELGLGASLNDMARDLAL 263 Query: 165 SESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQ 224 S +++KL+ E T + ++ R +A +LL + + +A Y+ F+ FR+ Sbjct: 264 STRSLRRKLEQEGTSYRDLVEEERRQLALQLLGNTTMKIEEVAAHLAYTDAGGFVRAFRR 323 Query: 225 YYGVTPHQFAQH 236 + G +P + ++ Sbjct: 324 WQGCSPSTYREN 335 >UniRef50_C6J1Q8 Two component transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J1Q8_9BACL Length = 542 Score = 120 bits (300), Expect = 5e-26, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 57/103 (55%), Gaps = 1/103 (0%) Query: 135 STVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMAR 193 +V+ ++++ I D+AE +Y + + + + E ++ R+S+A+ Sbjct: 427 KSVAEEIKQYIHAHYGDELTRNDLAEVVYLNPDYLARLFKKETGISLGSYVIQVRISVAK 486 Query: 194 RLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 +LLE ++ ++ +A + GY++ SYF F+Q GVTP+++ ++ Sbjct: 487 QLLETTKLSVYAVANQVGYANYSYFSKLFKQEVGVTPNEYKKN 529 >UniRef50_UPI0001851370 two component AraC family transcriptional regulator n=1 Tax=Bacillus coahuilensis m4-4 RepID=UPI0001851370 Length = 253 Score = 120 bits (300), Expect = 6e-26, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 1/106 (0%) Query: 132 NSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMS 190 +I+ KVE + + L+DIA+ Y S I +K ++ + + L+ RM Sbjct: 139 QTITITMRKVEEYLKEYYHEDIKLQDIADTFYISREYISRKFKEHFHLTITDYLVDLRMK 198 Query: 191 MARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 A LL+ + ++ IAEK GY YF F+++ GVTP+ + Q Sbjct: 199 KAMELLDRTNLKVYEIAEKVGYVDDKYFRKVFKKFAGVTPNDYRQK 244 >UniRef50_A3WY00 Transcriptional regulator, AraC family protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WY00_9BRAD Length = 345 Score = 120 bits (300), Expect = 6e-26, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 52/101 (51%) Query: 135 STVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARR 194 + V+G+V LI +++ + IA+ + SE ++++LQ+E T F ++ + +A + Sbjct: 238 AGVAGEVRGLILANLSMPIEFKRIAKYLNMSERSLRRRLQEEGTSFRQLADELKAQIAIK 297 Query: 195 LLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 + + + IA G+ + F + FR++ TP + + Sbjct: 298 YIRDTDLSVEEIAFALGFGDAASFRHAFRRWTNATPQDYRK 338 >UniRef50_C6IZ62 Transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IZ62_9BACL Length = 293 Score = 120 bits (300), Expect = 6e-26, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 62/156 (39%), Gaps = 1/156 (0%) Query: 80 LLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSG 139 L S P+ L I + P +++ ++ + + + Sbjct: 124 YLPEDSAPVRLARMIITDAGAGRITDPYIASSCVYQFVTELARMQVTSQKNKENWPESVK 183 Query: 140 KVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD-ENTCFSKILLASRMSMARRLLEL 198 + L+ + A+ + ++E + S+ + ++ D L R A LL Sbjct: 184 RAAELMESNYAQMISIDQLSEHVGLSKYHLIRRFSDSTGLTPGAYLTRVRTEKAMDLLRG 243 Query: 199 RQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFA 234 + + TIAE+ GYSS SYFI FR+ G+TP +F Sbjct: 244 TSLSIETIAERVGYSSGSYFIKAFRRLTGLTPGEFR 279 >UniRef50_A1TY01 Transcriptional regulator, AraC family n=2 Tax=Marinobacter RepID=A1TY01_MARAV Length = 345 Score = 120 bits (300), Expect = 6e-26, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 2/110 (1%) Query: 131 FNSISTVSGKVERLISFDIAKRW-YLRDIAERMYTSESLIKKKLQDENTCFSKILLASRM 189 + ++VS +V RL+ R L D+A++M S ++++L E F + + R Sbjct: 235 MEASASVSDRVLRLLESARDGRLPGLEDVAQQMGVSPRTLRRQLSAEGGGFHGLQESVRH 294 Query: 190 SMARRLL-ELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSP 238 AR LL + + IAE GYS S F FR++ G++P + + + Sbjct: 295 QRARELLLRHSAMSIDEIAEHLGYSDPSNFGRAFRKWEGMSPSAWRRDNQ 344 >UniRef50_C6CT66 Two component transcriptional regulator, AraC family n=2 Tax=Bacillales RepID=C6CT66_PAESJ Length = 262 Score = 120 bits (300), Expect = 6e-26, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 51/95 (53%), Gaps = 1/95 (1%) Query: 143 RLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQI 201 + + + + +RDIA+ ++ + S +++ FS L R+ A+ LL ++ Sbjct: 159 QYLEEHLHEPVTMRDIADHLHMNASYFSVLFKEQTGLTFSDYLTRRRVQRAKELLTNTRL 218 Query: 202 PLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 ++ IAEK GY + YF+ FR + GV+P Q+ ++ Sbjct: 219 SINEIAEKAGYQTAKYFVKVFRSHEGVSPGQYRKN 253 >UniRef50_Q0VSF4 Transcriptional regulator, AraC family n=2 Tax=Alcanivorax RepID=Q0VSF4_ALCBS Length = 338 Score = 120 bits (300), Expect = 6e-26, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 8/131 (6%) Query: 104 NSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMY 163 P L+ M C + K PLL G+V R+I + + ++A ++ Sbjct: 215 ADPRLARMAADQCEQEMATIKLPPPLL--------GQVRRIILGGGGRFPGVEEVAGELH 266 Query: 164 TSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFR 223 S +K+KLQ T + ++L R +A L + + IA GYS S F FR Sbjct: 267 MSSRTLKRKLQQLGTSYQEVLDGLRKGLAVEYLTQSEKTVDEIAMTLGYSDASNFARAFR 326 Query: 224 QYYGVTPHQFA 234 ++ +P + Sbjct: 327 RWTARSPSDYR 337 >UniRef50_C4G6T3 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G6T3_ABIDE Length = 534 Score = 120 bits (300), Expect = 6e-26, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 62/105 (59%), Gaps = 1/105 (0%) Query: 132 NSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD-ENTCFSKILLASRMS 190 ++ ++ ++ ++ L +A++ + S++ I + L+ N F ++L++ RM Sbjct: 428 ERYQNMAKRILDYLNEYYSEDLTLDSVADKFHMSKTYISRILKKYTNQSFLQLLISRRMD 487 Query: 191 MARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 +AR+++ + L+ IAEK GY+ SYFI F++ YGVTP+++ + Sbjct: 488 IARKMIAEDKFKLYEIAEKVGYNDFSYFIQVFKKKYGVTPNEYRR 532 >UniRef50_A8RW54 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RW54_9CLOT Length = 517 Score = 120 bits (300), Expect = 6e-26, Method: Composition-based stats. Identities = 41/175 (23%), Positives = 67/175 (38%), Gaps = 7/175 (4%) Query: 65 IRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNE--SGVNSPILSNMLYLSCLSMFSH 122 IR + L + L P L ++ D+ + N +++ L LS + Sbjct: 346 IRTAVSAILLETIRTLRTAGGKPEDLFLSVSDTITAVLNESNPALMARKLREILLSASVY 405 Query: 123 KKELIPLLFNSISTVSGKVERLISFDIAK-RWYLRDIAERMYTSESLIKKKLQDE-NTCF 180 L L NS V K + I + L D+A +Y + S E F Sbjct: 406 ISRLEKLRPNS---VVQKARKYIEENYWNPDLRLDDVAGYVYINASYFSSVFSKEMGISF 462 Query: 181 SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 L R+ A LL+ + ++ IA+ GY + S+F F++Y G P F + Sbjct: 463 GDYLTKVRIEKAMDLLKNTHMKIYEIADLVGYQNPSWFNVAFKRYTGQKPGDFRK 517 >UniRef50_B8KPR3 Helix-turn-helix-domain containing protein, AraC type n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KPR3_9GAMM Length = 363 Score = 119 bits (299), Expect = 7e-26, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 55/120 (45%) Query: 123 KKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSK 182 L+ S S+++ +V L+ + +IA ++ S+ + ++L E T + + Sbjct: 230 CNTLLEQTPRSSSSMADRVRTLMLLRPVESIGEPEIARALFVSKRTLARRLDLEGTSYRQ 289 Query: 183 ILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGTFS 242 I +ARR L + + T+A GY + F F+++ G+TP + SP +S Sbjct: 290 IRDQFLAELARRYLLEPRQTVETVAASLGYHDAAAFRKAFKRWTGMTPRNYRDASPSVYS 349 >UniRef50_C6CTL6 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CTL6_PAESJ Length = 533 Score = 119 bits (299), Expect = 7e-26, Method: Composition-based stats. Identities = 37/194 (19%), Positives = 71/194 (36%), Gaps = 11/194 (5%) Query: 58 VCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGV-NSPILSNMLYLSC 116 Y+Q +R + + + M + + S N++ N +L + Sbjct: 340 FRDYIQAVRLFVQYNRNLAITSVYGCIVYLMKEMNELGISVNKADPDNHGLLEQLSSFPT 399 Query: 117 LSMFSH--KKELIPLLFNSISTVSGK-------VERLISFDIAKRWYLRDIAERMYTSES 167 M + ++ + L + S K V I + L +A +Y + Sbjct: 400 FEMMTRFVERTVCDLRVQATERHSSKDVLQLVQVRAYIDEHYGENITLDSMASLVYMNPY 459 Query: 168 LIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYY 226 + F + L RM A RLL ++ ++ IAE+ GY + F + F++ Y Sbjct: 460 YFSSFFKKHMGENFKQYLTEVRMKHALRLLLQSELMVYEIAERVGYQNARQFSDMFKKKY 519 Query: 227 GVTPHQFAQHSPGT 240 G P ++ Q G+ Sbjct: 520 GKLPQEYKQSFKGS 533 >UniRef50_D0S2A2 Transcriptional regulator n=1 Tax=Acinetobacter calcoaceticus RUH2202 RepID=D0S2A2_ACICA Length = 339 Score = 119 bits (299), Expect = 7e-26, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 55/115 (47%), Gaps = 2/115 (1%) Query: 122 HKKELIPLLFN--SISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTC 179 +++E L S+ + S KV ++ ++ + ++A + + +++ L E Sbjct: 222 YEEECQQLWTRRSSLGSYSQKVRNILLQQPSQMPRIDEMAAHLQVNLRTLQRHLAIEGVT 281 Query: 180 FSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFA 234 + +++ R +A LL+ + + +A + GYS S F F+++ G++P F Sbjct: 282 YEQLIDDIRKDLAEDLLKTTNLTVEEVAIQLGYSEVSAFSRAFKRWKGISPRNFR 336 >UniRef50_B7S369 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S369_9GAMM Length = 357 Score = 119 bits (299), Expect = 7e-26, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 66/139 (47%), Gaps = 2/139 (1%) Query: 97 SFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDI-AKRWYL 155 SF+ + + +L + L + +I ++ S V+ ++ +++ D A+ Sbjct: 220 SFSARHLEAELLRDEPQLQEFLKLAPYHVIIEPQASTFS-VTHRIRKILGDDFRAEMPSF 278 Query: 156 RDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSST 215 ++ + S ++++L+ E T + +I +R A LL + + +AE+ G+S Sbjct: 279 EELTSLLNMSARTLRRRLEKEGTSYQRIKDNARRDAAISLLSREGLTVSEVAERVGFSDP 338 Query: 216 SYFINTFRQYYGVTPHQFA 234 S F +F+++ G++P + Sbjct: 339 SAFHRSFKKWTGLSPGSYR 357 >UniRef50_A4BF80 Transcriptional regulator, AraC family protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BF80_9GAMM Length = 359 Score = 119 bits (299), Expect = 7e-26, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 67/154 (43%), Gaps = 5/154 (3%) Query: 84 QSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKV-E 142 Q + + SF + ++ P+ S +LS L H + + L VS +V Sbjct: 194 QCELIDGADRVEVSFRKEQLDRPLPSANPHLSEL----HDRIIESYLAMLKDDVSTRVVS 249 Query: 143 RLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIP 202 +I +A+ + S +++KL D F ++L+++R +A + L IP Sbjct: 250 AIIRQLPRGNTTQDTVAKALNLSSRTLQRKLADRGLSFRELLVSTRKELALQYLRQNHIP 309 Query: 203 LHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 + + + G+S + F F+Q+ G P Q+ + Sbjct: 310 VLEVGYQLGFSEPANFSRAFKQWTGEPPGQYRER 343 >UniRef50_UPI0001788EC5 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788EC5 Length = 524 Score = 119 bits (299), Expect = 7e-26, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 5/119 (4%) Query: 125 ELIPLLFNSISTVSGKVERLISFDI----AKRWYLRDIAERMYTSESLIKKKLQDE-NTC 179 E+ +L N ST +G++ I +I + LRD+A R S + + ++E Sbjct: 406 EISEMLKNRKSTKNGRLVEEIIENIQARMHENITLRDMANRFSFSPNYLGVLFKEETGHN 465 Query: 180 FSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSP 238 FS ++ RM AR LL+ ++ ++ IA + GY YF F++ YG+TP ++ + Sbjct: 466 FSDYVIKLRMERARDLLKTTKLKIYEIASQTGYQYLPYFSRQFKEMYGMTPLEYRRKHS 524 >UniRef50_UPI0001B9ECE6 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001B9ECE6 Length = 519 Score = 119 bits (299), Expect = 7e-26, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 47/105 (44%), Gaps = 1/105 (0%) Query: 133 SISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSM 191 S ++ + I + + L+ +A+ ++ + + + + E + + + +++ Sbjct: 412 STTSPVQRAISFIHEHLGQSLSLQQVAKHVHMNPNYFSEMFKKETGQNYIEFVTQAKLRK 471 Query: 192 ARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 A LL + IA + GY YF F+++ G+TP ++ + Sbjct: 472 AMHLLRETPAKISEIANEIGYEDIKYFNRLFKKWTGLTPSEYRTN 516 >UniRef50_A1HMP5 Two component transcriptional regulator, AraC family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HMP5_9FIRM Length = 251 Score = 119 bits (299), Expect = 7e-26, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 77/167 (46%), Gaps = 7/167 (4%) Query: 75 HSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSI 134 KD +++ + A + PI ++ L + LS + K P+ I Sbjct: 73 RVKDIVIVTAHQDFAIAHAAIKIGAADLLIKPISADELN-TILSRYLPPKNTKPVYSPLI 131 Query: 135 STVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMAR 193 + KV ++ A+R L +IA ++ + S + ++ + E FS+ L+ R+ +A+ Sbjct: 132 T----KVLTILENRYAERLSLTNIAATVHVNPSYLSRRFKAEVGYSFSQYLINLRLKIAK 187 Query: 194 RLL-ELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPG 239 LL + + IAE+ G++S Y F + G+TP ++ +++P Sbjct: 188 DLLISRPDLSIAQIAEQTGFASQQYLSALFHRNTGLTPREYRKNNPA 234 >UniRef50_B7RUA5 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RUA5_9GAMM Length = 354 Score = 119 bits (299), Expect = 8e-26, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 62/140 (44%), Gaps = 1/140 (0%) Query: 98 FNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLI-SFDIAKRWYLR 156 + + PI+ + L + + + ++ T+S KVE+++ S + Sbjct: 206 ISRQLLQHPIVQSEASLREFLRLAPYPLVKRDVPGNLKTLSAKVEQILVSAGPERLPTAS 265 Query: 157 DIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTS 216 A ++ S + ++L E T F ++ R +A + + ++ + IA G+ S Sbjct: 266 GAASQLNMSPRTLHRRLTAEGTSFQQLKDDLRRELAVQYMHRDELSIDAIAAVMGFQDNS 325 Query: 217 YFINTFRQYYGVTPHQFAQH 236 F +F+++ G++P +F + Sbjct: 326 AFYRSFKKWTGISPGKFREQ 345 >UniRef50_C6QRS7 Two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y4.1MC1 RepID=C6QRS7_9BACI Length = 269 Score = 119 bits (299), Expect = 8e-26, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 1/109 (0%) Query: 135 STVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMAR 193 V I + L ++AE ++ S + K + E F + +M A+ Sbjct: 147 GKVIQSALNYIEENYQNGITLEEVAEHVHISPFYLSKLFKKELKMNFVSYVTEKKMQKAK 206 Query: 194 RLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGTFS 242 LLE +P+ IA + Y +YF F++ G+TP ++ + S S Sbjct: 207 ELLENTDLPVIHIALELNYQEPNYFSKVFKKVVGITPSEYRKRSKKGLS 255 >UniRef50_A8ZYY6 Transcriptional regulator, AraC family n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZYY6_DESOH Length = 343 Score = 119 bits (299), Expect = 8e-26, Method: Composition-based stats. Identities = 45/209 (21%), Positives = 79/209 (37%), Gaps = 11/209 (5%) Query: 38 ADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDS 97 F RR + TV Y R + + ++ R + IF+ Sbjct: 134 RFREIFDPGKYRRFIHEAHTVGFY-YICRDIMKEPLPLTEVRFAYPRPEYADEYKKIFNC 192 Query: 98 ---FNESGVNSPILSNMLYLSC-----LSMFSHKKELIPLL--FNSISTVSGKVERLISF 147 FN + L + L+ ++KE LL + ST +G+V++ + Sbjct: 193 PVIFNAKETQALFAGRYLEKALPCANVLTKNLYEKECRHLLQDLDRFSTTTGRVKQALFS 252 Query: 148 DIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIA 207 + ++A R S + ++L E T + + R A LL+ +P+ IA Sbjct: 253 YDNGFPGMAEMARRFNMSPQTLGRRLAAEGTDYKTVSRQVREKRACNLLQTSDLPIEEIA 312 Query: 208 EKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 + GYS T+ F F+ + G TP F + Sbjct: 313 ARLGYSDTANFYRAFKSWTGKTPLGFRRK 341 >UniRef50_UPI0001C3522D two-component system, response regulator YesN n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C3522D Length = 495 Score = 119 bits (298), Expect = 9e-26, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 79/224 (35%), Gaps = 22/224 (9%) Query: 14 FDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRNLG 73 I + L + L+ +L D F + H L ++ L Sbjct: 290 ISIDIVSDDLRLKDYDSLM--HHLEDLFESLKHEKT----------HSLIFVKYCFTELM 337 Query: 74 LHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNS 133 L +Q P + + + S ++ + + +K L Sbjct: 338 KEIIHYLPDDQKPD---LNKVAEKIYSSANIVELMDMTCSQAKKLLSQTQKNQGSCLK-- 392 Query: 134 ISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMA 192 S K+ + I + + L DI+ Y S + + + E K + R+ A Sbjct: 393 ----SDKIRQYIYQNYTQPLSLNDISSHFYISPNYLCSVFKKETGCNLMKFINEYRLEQA 448 Query: 193 RRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 +LL ++ ++ IAE G+S+ SYF FR YYG +P + Q Sbjct: 449 AKLLLETEMKVNKIAETVGFSNPSYFSQRFRDYYGESPENYRQK 492 >UniRef50_C6CRZ9 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CRZ9_PAESJ Length = 501 Score = 119 bits (298), Expect = 9e-26, Method: Composition-based stats. Identities = 29/192 (15%), Positives = 76/192 (39%), Gaps = 14/192 (7%) Query: 60 HYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNML-----YL 114 Y + + +L L L+IN S + ++ + F+ G ++ L + + Sbjct: 310 DYFEKVGGQAGSLQLTDGKFLVINHSLALDQISEVLGLFSHQGKSAESLLQTIDQLPGSM 369 Query: 115 SCLSMF----SHKKELIPLLFNSISTVSGKVER---LISFDI-AKRWYLRDIAERMYTSE 166 S F + + + +++ I ++ +AE ++ + Sbjct: 370 ELKSWFKAACQDFETRLDRWKQQANPYVNSIQQAIDYIEEHYLDSDLSIKQVAENIHLNP 429 Query: 167 SLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQY 225 S + + E F+ + ++ A+ LL + + I + G+ ++YF + F+++ Sbjct: 430 SYLSTLFKKETGETFTGYVNKLKLQKAQVLLRNTDMKISEICQTVGFEDSTYFSSVFKKH 489 Query: 226 YGVTPHQFAQHS 237 + ++P +F Q+ Sbjct: 490 FQISPSEFRQNH 501 >UniRef50_B0K234 Response regulator receiver protein n=8 Tax=Thermoanaerobacteraceae RepID=B0K234_THEPX Length = 537 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 86/224 (38%), Gaps = 24/224 (10%) Query: 18 HEQQKISLHNESILLLEKNLADDFAFCSPDTRRL------DIDELTVCHYLQNIRQLPRN 71 ++++ + L+ +L F + + DID++ ++ I + RN Sbjct: 318 INKERLFIDR----LMTGDLQGSFTIFNEIYEWMVFEYQEDIDKIK-AKLIEIIGVIKRN 372 Query: 72 LGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLF 131 L +++D I ++ N+ I N L + + + + Sbjct: 373 LSYYAEDENFIENRELEEILK-----INDVDKIKFIFINTLK-------NLFENIKTINK 420 Query: 132 NSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQ-DENTCFSKILLASRMS 190 + T K+ R I + K L D+A+ + S K + F L R++ Sbjct: 421 EKMDTFIAKIIRFIEDNFNKDITLDDVAKEVNMSYHYFSKFFKDQTGKNFIDYLTNLRVT 480 Query: 191 MARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFA 234 A+ LLE + + + K GYS +YF F++ G+TP ++ Sbjct: 481 KAKELLEDETVSIKEVCYKVGYSDPNYFSKIFKKATGMTPTEYR 524 >UniRef50_A1RF43 Transcriptional regulator, AraC family n=2 Tax=Shewanella RepID=A1RF43_SHESW Length = 293 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 79/238 (33%), Gaps = 24/238 (10%) Query: 3 HVCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYL 62 + C L+ S I+ + + +NL P D + T + Sbjct: 76 YRCHAGLVDFSIPIFINGNLTGFVSCGQARVAENLPL------PKIVENDKNLPTESKLI 129 Query: 63 QNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSH 122 + ++P + K L+ I +++ N I+ N S Sbjct: 130 ELYHEVPELSLMKIK--------SAAQLLNLIIENYLSKEYNLRIVKN---------VSP 172 Query: 123 KKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD-ENTCFS 181 K + I+ + + L +A + S + ++ T F+ Sbjct: 173 VKNQKLETLGRHQATMEMILNHINQNFSDNLNLEQMASKANLSMFYFSRTFKELTGTGFT 232 Query: 182 KILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPG 239 L+ RM+ A LLE + IA GY+ YF F++ + +P +F HS G Sbjct: 233 AYLINKRMTEAHCLLEQTNWSIEKIARSVGYNDVHYFSRLFKKTFNRSPSEFRNHSSG 290 >UniRef50_C0EIY2 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EIY2_9CLOT Length = 252 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 65/118 (55%), Gaps = 4/118 (3%) Query: 122 HKKELIPLLFNSIST---VSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-N 177 ++++++ L+ + S V +V+ ++S I+ IAE ++ + + + E Sbjct: 129 YQEQVLGSLYPADSQEPGVVHRVKEIVSQFISHDLTREQIAELVHLAPDYLSHLFKKETG 188 Query: 178 TCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 S+ + + R++MA+ LL +P+ +IA+K GYS SYF F++ YG+TP ++ + Sbjct: 189 VTLSEYIASQRLTMAKYLLAQTSLPVSSIADKVGYSYVSYFNRVFKKAYGMTPVEYRR 246 >UniRef50_A0Q2M6 Transcriptional regulatory protein n=6 Tax=Clostridium RepID=A0Q2M6_CLONN Length = 246 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 2/116 (1%) Query: 123 KKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFS 181 KK + N V I + L+D+A+ + S S + K + E F+ Sbjct: 130 KKRIEESNKNCTEEFQE-VVEYIDKNFKNDITLKDVADHVNFSSSYLSKLFKKEMGINFN 188 Query: 182 KILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 + + R+ A+ +L I ++ IA GY+ +YF F++ +TP ++ +S Sbjct: 189 RYITKIRIDKAKEILINSNISINEIAFSVGYNEPNYFCKVFKKIVNMTPSEYRTNS 244 >UniRef50_B4X4X5 Transcriptional regulator, AraC family protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4X4X5_9GAMM Length = 341 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 73/158 (46%), Gaps = 5/158 (3%) Query: 79 RLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVS 138 R + + P T F + S + +N + S L ++ + +VS Sbjct: 186 REIFGEVPDFGQATNCFSLSKQVLRQSLLTANRVTHSALIKTLEERLH---RYGVSESVS 242 Query: 139 GKVERLISFDI--AKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLL 196 +V LI + + ++A R++ S + ++L+ ENT ++ +R+ A+RLL Sbjct: 243 DRVRNLIRKALVEGELLTSEEMALRLFMSSRTLNRRLEKENTHIRLLMDQARLEYAKRLL 302 Query: 197 ELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFA 234 + +P+ T+A K GY + S F F++Y+ V+P Q Sbjct: 303 QTTSLPISTVANKSGYKNPSSFSRAFKRYFDVSPGQCR 340 >UniRef50_C6CSY2 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CSY2_PAESJ Length = 533 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 57/154 (37%), Gaps = 1/154 (0%) Query: 83 NQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVE 142 ++ P + + + + + Y++ LS + S ++ Sbjct: 369 SEWPAITTASPLLADQRAIDSVMTLSALHAYVAELSAAIEAHIRARASSSDASNPMSEIV 428 Query: 143 RLISFDIAKRWYLRDIAERMYTSESLIKKKLQD-ENTCFSKILLASRMSMARRLLELRQI 201 + + L D+A R + S + ++ + F + + RM A LL Sbjct: 429 AYLDGHYFEDVGLIDMATRYHMDPSYLSRQFKAATGVNFIEYVTRKRMEKACELLRESDR 488 Query: 202 PLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 + IAE GY + YF F+++ G TP +F + Sbjct: 489 KVSDIAELVGYENQRYFSQVFKKFTGQTPSEFRE 522 >UniRef50_C6J2Y7 Transcriptional regulator (Fragment) n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J2Y7_9BACL Length = 118 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 1/102 (0%) Query: 137 VSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD-ENTCFSKILLASRMSMARRL 195 + V + A+ L+ IAER + + K+ ++ F L + RM A L Sbjct: 14 IMEAVRLYLEQHYAEPIQLQMIAERFFIHPNYFSKRFKEKYGESFVDYLNSIRMKEAAAL 73 Query: 196 LELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 L + + I+E+ G+ +YF + FR++YG TP Q+ + Sbjct: 74 LGETNLKIREISERVGFEDAAYFSSVFRKWYGETPKQYRERQ 115 >UniRef50_UPI0000F30067 putative transcriptional regulator AraC/XylS family protein n=1 Tax=Acinetobacter baumannii ATCC 17978 RepID=UPI0000F30067 Length = 194 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 38/174 (21%), Positives = 71/174 (40%), Gaps = 3/174 (1%) Query: 62 LQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFS 121 ++ LP+N G + L +A+ + S V P L + Sbjct: 19 FEDFNDLPQNAGTSQN---YVQGQLNPLLESALHQFIDFSLVAPPSAFKFRKRELLELIY 75 Query: 122 HKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFS 181 + N ++S +V+ LIS+ ++ IA +++ S S +++KL+ E Sbjct: 76 YSGYTAIAKLNMNKSLSERVQTLISYHLSTELTAEFIAAQLFMSSSTLRRKLKSEGNSIQ 135 Query: 182 KILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 I R+ L++ + IA +CGY S S F F+ +G+TP + + Sbjct: 136 DIRNRVRLGHGLHLIQTTNNSIGNIAFECGYQSQSRFTEQFKNLFGITPRELRK 189 >UniRef50_Q1N693 AraC-type DNA-binding domain-containing protein n=1 Tax=Bermanella marisrubri RepID=Q1N693_9GAMM Length = 342 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 65/120 (54%), Gaps = 3/120 (2%) Query: 120 FSHKKELIPLLFNSISTVSGKVERLISFDIAK-RWYLRDIAERMYTSESLIKKKLQDENT 178 ++ +++ LF ++S KV RL+ +IA + +A+ + S + +KL+++N+ Sbjct: 224 LNYANQILSRLFKR--SISDKVRRLVEVNIADSEFDAEQVAKALNMSRQTLYRKLKNDNS 281 Query: 179 CFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSP 238 +S I+ A + A +LL+ PL IA G+S S F F+++ G++P +F + + Sbjct: 282 SYSDIVEAVKKEKAFKLLKTTSTPLTVIAYDLGFSELSAFTRAFKRWTGLSPAEFRRQNQ 341 >UniRef50_C6CWB0 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CWB0_PAESJ Length = 530 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 65/148 (43%), Gaps = 1/148 (0%) Query: 89 PLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFD 148 PL + + + P +++ + K + +V+ ++ +LI+ Sbjct: 380 PLRDQLLADHWKELSSLPTIAHYHAYALRFCRELLKAAAERDLDRHQSVAEQIMKLIAER 439 Query: 149 IAKRWYLRDIAERMYTSESLIKKKLQD-ENTCFSKILLASRMSMARRLLELRQIPLHTIA 207 + DIA+ +Y S + ++ ++ L RM+ A LL+ R + + IA Sbjct: 440 YHLPLTVEDIAKEVYLSPNYVRTIFKEKTGETILDYLTRIRMNHAAELLKDRALKVRDIA 499 Query: 208 EKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 + Y + SYF + F+++ G TP+++ + Sbjct: 500 HRVSYENVSYFCSVFQKHKGSTPNEYRK 527 >UniRef50_C5CTH9 Transcriptional regulator, AraC family n=1 Tax=Variovorax paradoxus S110 RepID=C5CTH9_VARPS Length = 313 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 13/147 (8%) Query: 98 FNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSIST-------VSGKVERLISFDIA 150 F G IL ++ L+C H+ E L ++ + +V R + +A Sbjct: 144 FGAVGAIRGILLQLMALAC-----HRHEAPLLAQAALQSGRSAGHDALQRVMRYVREHLA 198 Query: 151 KRWYLRDIAERMYTSESLIKKKLQDENT-CFSKILLASRMSMARRLLELRQIPLHTIAEK 209 + L D A S + + L+ + F++++ R+ A+ LL + IA + Sbjct: 199 EEMSLNDAAAAAMLSPNYLAHLLKKQTQRTFTELVTERRLERAKELLVTSNARIGDIARQ 258 Query: 210 CGYSSTSYFINTFRQYYGVTPHQFAQH 236 CG+ YF FR GVTP QF Sbjct: 259 CGFGDAVYFSRRFRLQSGVTPRQFRSQ 285 >UniRef50_UPI00017895AE two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017895AE Length = 353 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 7/133 (5%) Query: 114 LSCLSMFSHK-KELIPLLFNSISTVS----GKVERLISFDIA-KRWYLRDIAERMYTSES 167 L+C K KE++ L+ S + S K +R I + A + L+++A+ + S + Sbjct: 217 LACRRQTEDKVKEMLALIKGSRNLGSRHNIQKAKRFIEENYAMEDLSLQEVADSVGMSVT 276 Query: 168 LIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYY 226 + + + E N F K L+ RM AR LL ++ A + G+S +F TF++++ Sbjct: 277 YLSRTFKSETNMNFVKYLVQVRMEKARELLAESELSAQEAAYRVGFSDYVHFSKTFKKFH 336 Query: 227 GVTPHQFAQHSPG 239 G+TP + + Sbjct: 337 GLTPSAYRKQCKA 349 >UniRef50_C6CXP8 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CXP8_PAESJ Length = 768 Score = 118 bits (297), Expect = 1e-25, Method: Composition-based stats. Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 1/129 (0%) Query: 113 YLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKK 172 +L C ++ + + +S K+ LI L D A ++ + + + Sbjct: 640 WLWCKVVYPMIQIFMDRQDAQYHNISEKMIDLIHHHYDTDLSLEDCAAKLNYNANYLSSV 699 Query: 173 LQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPH 231 + E NT FS+ L A R SMA++ L P+ IA + Y++ FI +FR+ G+TP Sbjct: 700 FRKETNTSFSEYLAAYRFSMAKKWLRETDTPVKDIASRLCYNNPQNFIRSFRKLEGITPG 759 Query: 232 QFAQHSPGT 240 Q+ + T Sbjct: 760 QYREKHVAT 768 >UniRef50_UPI0001789612 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789612 Length = 405 Score = 118 bits (297), Expect = 1e-25, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 53/104 (50%), Gaps = 2/104 (1%) Query: 134 ISTVSGKVERLISFDIA-KRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSM 191 +S + + +LI A + L A+ + S + + L+ E T F ++ +R+ Sbjct: 295 LSPLVRRARQLIQEQYAVRELTLESFAQALQVSPVYLSRMLKKELGTSFITLMTQTRIQK 354 Query: 192 ARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 A +LL ++ + IAE+ GY S YF F++ GV+P+++ + Sbjct: 355 AIQLLNATELSILDIAERVGYDSQHYFSTAFKKVMGVSPNRYRK 398 >UniRef50_C6D3S3 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D3S3_PAESJ Length = 538 Score = 118 bits (297), Expect = 1e-25, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 1/105 (0%) Query: 136 TVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARR 194 +V + + I +A+ DIA +Y + + + + E S LL R+ +A Sbjct: 426 SVVEQAKTYIHQHLAEEISREDIASHVYLNPDYLTRIFKRETGMSISDYLLQQRLRIAAE 485 Query: 195 LLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPG 239 LL + + +A + GY++ S+F F++Y G+ P ++ Q Sbjct: 486 LLANTDLAVSAVASRIGYANFSHFSRIFKKYMGINPLEYRQSQES 530 >UniRef50_C6CVB2 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CVB2_PAESJ Length = 542 Score = 118 bits (297), Expect = 1e-25, Method: Composition-based stats. Identities = 41/203 (20%), Positives = 84/203 (41%), Gaps = 10/203 (4%) Query: 33 LEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVT 92 +E + F D+ E + Y ++ + +H +LL + P L Sbjct: 342 VETKIRHIFRDMLETGGEQDMSEQLIEAY--HVLAGAFSYIIHKNGKLLSSVLSPEAL-- 397 Query: 93 AIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKR 152 F+ + + ++ S + +++ L ++ ST+ V I ++AK Sbjct: 398 ---KFFHAPAYTTA--AQLMEWSIRILQGIREDADQELKDNHSTIVRAVRSFIDANLAKD 452 Query: 153 WYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCG 211 L IA+ ++ + K + E ++ + RM A LL + I+E G Sbjct: 453 VSLPAIADHVHLHPVYLSKIYKAETGEPLTEYVYRLRMEKAAFLLRTTPSKVFEISEIVG 512 Query: 212 YSSTSYFINTFRQYYGVTPHQFA 234 Y++T+YFI F++++ VTP ++ Sbjct: 513 YNNTAYFIRVFKKFFDVTPQEYR 535 >UniRef50_A4C5C3 AraC-type DNA-binding domain-containing protein n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4C5C3_9GAMM Length = 275 Score = 118 bits (297), Expect = 1e-25, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 63/149 (42%), Gaps = 3/149 (2%) Query: 91 VTAIFDSFNESGVNSP--ILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFD 148 ++A F E +P + + +F I L +S S +S ++ +I+ D Sbjct: 118 LSACLAQFVEWAHIAPPAMWAMRRKEIVHLLFQLGHSNIAGLVHSHS-LSNQIHLVIAND 176 Query: 149 IAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAE 208 + + +R SES +++KL+ E I R+ LL+ + + IA Sbjct: 177 QELDVTIESLCQRFAMSESTLRRKLKAEGITLQDIKDQVRLGQGLHLLQSTRKSIGMIAN 236 Query: 209 KCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 CGY S S F F+ +G+TP Q + Sbjct: 237 VCGYQSQSRFSERFKYRFGLTPSQLRKTQ 265 >UniRef50_B7GJK9 DNA-binding response regulator (Contains REC and AraC-type DNA-binding domain) n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GJK9_ANOFW Length = 428 Score = 118 bits (297), Expect = 1e-25, Method: Composition-based stats. Identities = 30/204 (14%), Positives = 78/204 (38%), Gaps = 1/204 (0%) Query: 33 LEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVT 92 +++ + + + I+ H + ++ L + L + R+ I V Sbjct: 219 IKQQRRCLCSLLNQRQMAIFIEAKQDEHVISFVQSLLKQLEKVLQQRVKIGIGTIQSGVD 278 Query: 93 AIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKR 152 + S+ E+ + +S+ + + E+ + +V +VE + + Sbjct: 279 GMKRSYKEASIAVRYVSSFSRVMHVDDVPLTDEVEQTTIKTGGSVIEQVEMFLQENYCYD 338 Query: 153 WYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCG 211 L ++A+ ++ + K + E F + R+ A++L+ + + + G Sbjct: 339 VTLEEVAKYVHLTPYYFSKLFKKETGQTFIDYVTHLRIEKAKQLMRDEGLTVKEACYRVG 398 Query: 212 YSSTSYFINTFRQYYGVTPHQFAQ 235 Y +YF F++ +TP ++ Q Sbjct: 399 YKDPNYFSRVFKKVTNMTPTEYRQ 422 >UniRef50_A8SQD4 Putative uncharacterized protein n=2 Tax=Coprococcus RepID=A8SQD4_9FIRM Length = 300 Score = 118 bits (297), Expect = 1e-25, Method: Composition-based stats. Identities = 43/242 (17%), Positives = 92/242 (38%), Gaps = 15/242 (6%) Query: 7 VILIRR-SFDIYHEQQKISLHNESILLLEK------NLADDFAFCSPDTRRLDIDELTVC 59 +I +R+ + + QK + + S+ + + D L+ Sbjct: 42 IIYVRKGPLTVEIDGQKFTGEDGSVFIASPGVLHMMSAPDTPVDYFTFIFPLEFISFQTK 101 Query: 60 HYLQN-----IRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYL 114 L++ +R R DR L+ +P++ + + + G + I + L Sbjct: 102 DALEDEVFFPLRNHTRGFRPEVADRKLLG--KLIPILDELVEENGKMGTHRQIQVRIRLL 159 Query: 115 SCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQ 174 + + +L L N+ + ++ I + L +++E + SE + + Sbjct: 160 QMMDLLVEYSQLEELTRNASGELEKEILLYIQDNYHDNIGLAELSEHFHLSEKYMSRLFS 219 Query: 175 DE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 + + ++ + R+ AR LLE + + IA K GY + SYFI F G +P ++ Sbjct: 220 ERFHMTLTQYVNYVRLRYARHLLESTDLSVTEIAMKSGYQNVSYFIRRFSSAMGESPLRY 279 Query: 234 AQ 235 Sbjct: 280 RN 281 >UniRef50_Q9K9C1 Two-component response regulator n=1 Tax=Bacillus halodurans RepID=Q9K9C1_BACHD Length = 510 Score = 118 bits (297), Expect = 1e-25, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 2/125 (1%) Query: 116 CLSMFSH-KKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQ 174 C F K++I + N S+ K+ I ++ L +A + + S + + Sbjct: 379 CFYQFLEVTKQIISVYSNEGSSSIQKMLAYIEEHHSEPLSLSQLANYFHFNPSYLSAYFR 438 Query: 175 DE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 + FS+ L R+ A+ L+ IP+ I GYS SYF F++ G+ P ++ Sbjct: 439 QHHDEGFSEYLNKVRIRKAKEWLKSSTIPISEIYALVGYSDHSYFCKVFKKRTGMPPSRY 498 Query: 234 AQHSP 238 + + Sbjct: 499 RRENA 503 >UniRef50_A4A9K9 AraC-family transcriptional regulator n=3 Tax=unclassified Gammaproteobacteria RepID=A4A9K9_9GAMM Length = 336 Score = 118 bits (297), Expect = 1e-25, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 63/141 (44%), Gaps = 2/141 (1%) Query: 97 SFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLR 156 SF +++P+ S+ L L + L+ L +S + + + L+ + + Sbjct: 193 SFPLELLDTPLPSSNPALRQLYE-AECARLLADLSDSAA-IGEQTRSLLRKLEGQYPKMP 250 Query: 157 DIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTS 216 +A + S +++L +E F +L R A R L R++P+ +IA + G++ S Sbjct: 251 QVATMLNMSPRTYRRRLTEEGVSFQALLDEVRAEHATRHLRERRLPIASIAYQLGFNDPS 310 Query: 217 YFINTFRQYYGVTPHQFAQHS 237 F +R++ GVTP Sbjct: 311 NFRRAYRRWTGVTPGAVRNKG 331 >UniRef50_Q1GHD7 Transcriptional regulator, AraC family n=2 Tax=Rhodobacteraceae RepID=Q1GHD7_SILST Length = 336 Score = 118 bits (297), Expect = 1e-25, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 1/106 (0%) Query: 135 STVSGKVERLISFDIAKR-WYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMAR 193 ++V + RL++ ++ D+A M SE + ++L DE F +L ++ S+A+ Sbjct: 230 TSVRAGLLRLLTPALSNGVPQAADVAREMGMSERTLYRRLADEGLTFRDVLTEAQSSLAQ 289 Query: 194 RLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPG 239 LL+ + + IA G+S S F F+++ G P QF Q P Sbjct: 290 ELLKDSRSSIAEIAFLTGFSEQSTFSRAFKRWVGQAPAQFRQQFPS 335 >UniRef50_C6CZ23 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ23_PAESJ Length = 522 Score = 118 bits (297), Expect = 1e-25, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 53/143 (37%), Gaps = 2/143 (1%) Query: 97 SFNESGVNSPILSNMLYLSCLSMFSHKKELI-PLLFNSISTVSGKVERLISFDIAKRWYL 155 + + +N + K I S + ++ I A+ L Sbjct: 378 YYYFKAIEESRNANTAAELLTAFIGEAKLCIAEKAEQSGNANMKRLLDYIHEHYAESLNL 437 Query: 156 RDIAERMYTSESLIKKKLQ-DENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSS 214 ++A+ + + S + N F L R+ A LL + + I+ GYS Sbjct: 438 TEMAKHFHFNPSYLSSYFSTHHNEGFVDYLHRVRLEKASELLRAGEASISEISGMVGYSD 497 Query: 215 TSYFINTFRQYYGVTPHQFAQHS 237 SYF F+++ G++P ++ Q + Sbjct: 498 HSYFCKVFKKHTGLSPSRYRQQN 520 >UniRef50_Q8EPK8 Transcriptional regulator (AraC/XylS family) n=1 Tax=Oceanobacillus iheyensis RepID=Q8EPK8_OCEIH Length = 769 Score = 118 bits (297), Expect = 1e-25, Method: Composition-based stats. Identities = 43/209 (20%), Positives = 93/209 (44%), Gaps = 14/209 (6%) Query: 33 LEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVT 92 ++K L + F + ++ + +L ++ +L + LG+ K+ +++ P + + Sbjct: 573 VDKGLQELFNTLFDKEFNHNQYQIFIIKFLYDLIELKQLLGVDLKN---LDERPLVHEL- 628 Query: 93 AIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKR 152 ++ S + L + + E + T+S K+ +I + Sbjct: 629 ---ENLRTSDDLQKWFKDNLIYPIIEKVEERTE------SKYKTISDKIIHIIQKEYDTA 679 Query: 153 WYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCG 211 L IA R++ + + + Q E T FS+ LL R+++A++ L + + IA K Sbjct: 680 ISLDSIAARLHYNPNYLSSIFQKEMKTTFSEYLLKYRINIAKKWLVDTDLSVKDIAIKLQ 739 Query: 212 YSSTSYFINTFRQYYGVTPHQFAQHSPGT 240 Y+++ FI +FR+ G+TP +F + T Sbjct: 740 YNNSQNFIRSFRKIEGITPGKFRSENKKT 768 >UniRef50_UPI000178921D transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178921D Length = 318 Score = 118 bits (297), Expect = 1e-25, Method: Composition-based stats. Identities = 46/238 (19%), Positives = 88/238 (36%), Gaps = 25/238 (10%) Query: 16 IYHEQQKISLHNESILLL----------EKNLADDFAFCSPDTRRLDIDELTVCHYLQNI 65 I K+ I+ + +NL D P +D+ + ++ Sbjct: 74 ILINGMKLPFRQGDIIFINSNDLHRAYETENLVMDVIMFEPSLLSIDL------KFDPDL 127 Query: 66 RQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESG-----VNSPILSNMLYLSCLSMF 120 R+LG + DR L+ + + + G + L L L+ + Sbjct: 128 MAPFRSLG--NVDRQSPVHDELARLLRRMMEEYKARGTSYMSLIRSDLIRFLSLANRHLS 185 Query: 121 SHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTC 179 S +E P+ + + V R + + W L+++++ + S S Q T Sbjct: 186 SPAQEHRPIKGRGMHALKE-VLRTMELHLDYGWTLQELSDLTHLSPSRFSALFQQAVGTS 244 Query: 180 FSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 L+ R++ A LLE + IAE CG+ + S F F+Q+ G +P + + + Sbjct: 245 PHHYLIQLRLTHAVHLLETTDQKIIEIAETCGFRNLSNFNRLFKQHVGASPSEIRERA 302 >UniRef50_C0FP55 Putative uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FP55_9FIRM Length = 279 Score = 118 bits (297), Expect = 1e-25, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 93/233 (39%), Gaps = 11/233 (4%) Query: 15 DIYHEQQKISLHNESILLLEKNLADDFAF-CSPDTRRLDIDELTVCHYLQNIRQL-PRNL 72 L +L+ ++ F + C+ +R ++ + ++ +++ Sbjct: 46 SALINHSIYHLVPGDFVLIPQSAMHRFVYDCNSTVKRYNL--FFTMDFAASLFHSDTKDI 103 Query: 73 GLHSKDRLLINQSPPM-PLVTAIFDSFNESGVNSPILSNMLYLSC----LSMFSHKKELI 127 H +++ + + T +FD+ + V S + + LS+ ++ I Sbjct: 104 LEHLFHYPVLHLTSLLQGNATRLFDTLYQETVGQDSCSQAVIPAYISLILSLLVRNRDHI 163 Query: 128 PLL-FNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD-ENTCFSKILL 185 L +S R IS + L +A+ ++ S + KK + F + L Sbjct: 164 QLQDLDSAENAIQASARYISTHFQEPVSLHMVADYVHMSPTYYSKKFKQITGVGFKEYLT 223 Query: 186 ASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSP 238 +R+ A LL + + IA +CG++ +YF + FR+ +G++P Q+ + Sbjct: 224 KTRLYEATELLTHTSLNVTEIAIRCGFNDGNYFGDAFRKEFGLSPLQYRKRQK 276 >UniRef50_Q8RSF6 Putative transcriptional regulator protein n=2 Tax=Bacteria RepID=Q8RSF6_WOLSU Length = 333 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 70/124 (56%), Gaps = 3/124 (2%) Query: 114 LSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIA-KRWYLRDIAERMYTSESLIKKK 172 ++ L F + + I L + S +V R++S I K ++D+A+R+ + ++ + Sbjct: 209 IAMLEFFKMQADRI--LDEEEESYSIRVTRILSEMIHYKAPEVKDVAKRLEITPRTLQNR 266 Query: 173 LQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQ 232 L+ E T F +++++++ +A L+ ++I + +AE+ GYS TS F F+Q+ TP + Sbjct: 267 LKVEGTTFQELIISTKKQLACHYLKTKEINIQEVAERLGYSETSAFNRAFKQWTNFTPRE 326 Query: 233 FAQH 236 F ++ Sbjct: 327 FRKN 330 >UniRef50_B7RX05 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RX05_9GAMM Length = 335 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 52/103 (50%), Gaps = 1/103 (0%) Query: 135 STVSGKVERLISFDIAKR-WYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMAR 193 + +S +V+ +I D ++ I+ + S ++++L+ E T F +I SR A+ Sbjct: 229 NNLSAQVKAMIGHDFSEGFPSFEMISSALSMSAPTLRRRLKREGTTFQQIKDDSRCEAAK 288 Query: 194 RLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 L + ++ +A + G++ S F +F+++ G TP QF Sbjct: 289 LCLNRHDLSINEVAMQMGFTDPSAFHRSFKKWTGQTPGQFRSQ 331 >UniRef50_B0NDZ7 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NDZ7_EUBSP Length = 515 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 35/224 (15%), Positives = 88/224 (39%), Gaps = 15/224 (6%) Query: 25 LHNESILLLEKNLADDFAFCSPDTRRL---------DIDELTVCHYLQNIRQLPRNLGLH 75 + + L +N D F F + RL +I +++ +I ++ Sbjct: 287 VESSEYDLTAENTFDLFEFENHLFNRLFEDAEQVLKNIFSKFKSNFVSSIETKNICFQIY 346 Query: 76 SKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSIS 135 ++ + +P + + + + +L + +F + K + + Sbjct: 347 YICYRVLKKREAIPPSSELLARIHSAPDI-----FILENTVNELFQYTKNQFNGSNGTQN 401 Query: 136 TVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARR 194 + + I ++A L IAE ++ S S + + + + ++ + +R+ A+ Sbjct: 402 RIIENTIKFIHQNLATALSLEVIAEHLHISASHLSRTFKKYCDESLTEYVNKTRIEKAKE 461 Query: 195 LLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSP 238 L+ + + IA + GY+ +YF + F++Y G +P ++ Q Sbjct: 462 YLKDSNMLTYEIANQVGYNDATYFSSIFKKYTGFSPSEYRQKYA 505 >UniRef50_B5XY24 Transcriptional regulator, AraC family n=3 Tax=Klebsiella RepID=B5XY24_KLEP3 Length = 277 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 65/145 (44%), Gaps = 6/145 (4%) Query: 97 SFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSG---KVERLISFDIAKRW 153 S NE + L+ L ++ L SH +E + L +S V+ + +++ Sbjct: 129 SLNEVSLQPDPLTARLVVAAL--LSHCREQLVGLEMRVSRSRDLFLAVQDYLEENLSLPL 186 Query: 154 YLRDIAERMYTSESLIKKKLQDEN-TCFSKILLASRMSMARRLLELRQIPLHTIAEKCGY 212 +A+R + + + + Q F++ L R+ A++LL + + IA CG+ Sbjct: 187 TRESVAKRFHITPNYLSHIFQKSGSVGFNEYLTRVRLEKAKQLLRGYDLKVKEIAHNCGF 246 Query: 213 SSTSYFINTFRQYYGVTPHQFAQHS 237 ++YF F++Y +P ++ +H Sbjct: 247 VDSNYFCRVFKRYTERSPSEYRRHC 271 >UniRef50_A8RUC8 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RUC8_9CLOT Length = 479 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 1/105 (0%) Query: 135 STVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMAR 193 S + K +I + L +AE++ + + + E + F L + RM A+ Sbjct: 373 SPLIQKALHVIDKSYKEPISLNSVAEQLNITPQYLSRLFMKEMSRSFVDYLTSYRMERAK 432 Query: 194 RLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSP 238 LL+ + ++ I + GY YF F++ GVTP+Q+ SP Sbjct: 433 SLLQDTNMKINMICVQVGYQDAKYFCTLFKKITGVTPNQYRASSP 477 >UniRef50_Q05587 Regulatory protein pocR n=57 Tax=Gammaproteobacteria RepID=POCR_SALTY Length = 303 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 45/106 (42%), Gaps = 1/106 (0%) Query: 132 NSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD-ENTCFSKILLASRMS 190 + K R I ++ L D+A +Y S K + + F+ + RM Sbjct: 188 TPHDSKMKKALRYIDAHLSDDLRLEDVASHVYLSPYYFSKLFKKYQGIGFNAWVNRQRMV 247 Query: 191 MARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 AR LL + +IA G+S TSYF FRQ Y VTP + Q Sbjct: 248 SARELLCHSDWSIASIARNLGFSQTSYFCKVFRQTYQVTPQAYRQQ 293 >UniRef50_A5EF29 Transcriptional regulator, AraC family n=2 Tax=Proteobacteria RepID=A5EF29_BRASB Length = 382 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 57/132 (43%), Gaps = 8/132 (6%) Query: 103 VNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERM 162 +P+++ + C + S ++ S ++ + ++ + + +IA + Sbjct: 230 NANPMVAKVCERFCEQVLSEQR--------PASELAESIRTILVRQPGRFATIDEIASEI 281 Query: 163 YTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTF 222 S + ++L + + I+ R ++A LE +P+ I + G+S TS F F Sbjct: 282 GMSLRTLNRRLAADGITYQSIIDDMRKTLAIEYLERTTLPVEQICARVGFSDTSNFRKAF 341 Query: 223 RQYYGVTPHQFA 234 +++ G +P F Sbjct: 342 KKWTGQSPSSFR 353 >UniRef50_D0LUU5 Transcriptional regulator, AraC family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LUU5_HALO1 Length = 343 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 66/139 (47%), Gaps = 4/139 (2%) Query: 98 FNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDI-AKRWYLR 156 F + P+LS L+ + L+P V+ +V + + + L Sbjct: 206 FRARDLARPLLSADAELA-EEFSARAARLMP--AECTLAVAEQVRLALRGALRGEVPSLA 262 Query: 157 DIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTS 216 +IA RM+ SE ++++L+ T F++++ R +ARR L ++ ++ G++ + Sbjct: 263 EIARRMHLSERTLQRQLRGNGTSFTRLVDEVRQELARRYLGGDELHAAEVSYLLGFAHPN 322 Query: 217 YFINTFRQYYGVTPHQFAQ 235 F F+++ G+TP ++ + Sbjct: 323 SFFRAFKRWTGLTPEEYRE 341 >UniRef50_Q0VMP4 Transcriptional regulator, AraC family n=2 Tax=Alcanivorax RepID=Q0VMP4_ALCBS Length = 334 Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 87/232 (37%), Gaps = 20/232 (8%) Query: 8 ILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQ 67 +LI + E ++ L ++ ++ + + + T + ++I Sbjct: 123 LLILDDSGVPEEVREYLLARDASAVMMIQEELFAGRVPLSSLEIRLPPRTAATF-ESIFG 181 Query: 68 LPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELI 127 L G MPL A +P+ + + C + + Sbjct: 182 LVPEFGRPRSQARFALGLLDMPLPQA-----------NPVTARLCEEQCHQLLVQRYR-- 228 Query: 128 PLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLAS 187 +V+ +V R + + + +A+ + + +++ LQ E T + +L Sbjct: 229 ------KGSVAAQVRRRLLQQPGRFPDMEAMAQELAITSRTLRRHLQAEGTGYRMLLDEV 282 Query: 188 RMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPG 239 R +A + L L + L I+E+ G+S + F + FR++ G +P +F + G Sbjct: 283 RQMLAEQWLTLGILSLTEISERLGFSEIANFNHAFRRWTGQSPGRFRRERQG 334 >UniRef50_C9RT55 Two component transcriptional regulator, AraC family n=4 Tax=Bacillales RepID=C9RT55_GEOSY Length = 259 Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 1/98 (1%) Query: 143 RLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQI 201 + I + L+D+AE ++ + S +++ FS+ L RM A+ LL + Sbjct: 161 QFIDQRLKDDISLKDVAEHVHLNPSYFSTLFKEQMQLTFSEYLTRRRMQRAKELLMTTDM 220 Query: 202 PLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPG 239 + IAE+CGY + YFI+ F++ G TP + + G Sbjct: 221 TVAEIAEECGYRTAKYFIHLFKEMEGKTPSSYRKSQKG 258 >UniRef50_C6D127 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D127_PAESJ Length = 534 Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 52/102 (50%), Gaps = 1/102 (0%) Query: 135 STVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMAR 193 +V K + I ++ + D+A + + + + + + E L+ ++M+ AR Sbjct: 427 DSVVQKSVQYIKENVEEDISREDVAAHVGLNPAYLSRLFKKETGQNLIDYLIETKMARAR 486 Query: 194 RLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 +LL+ + + IA++ GYS+ S+F F++ YG+ P ++ Sbjct: 487 QLLDTTGMTVSAIAQQVGYSNFSHFTKMFKKQYGINPQEYRN 528 >UniRef50_C5EHL9 Predicted protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EHL9_9FIRM Length = 254 Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 1/103 (0%) Query: 135 STVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMAR 193 + + K + + R L+D++E ++ S + + + + + + RM AR Sbjct: 151 NLLVQKAIQYVEVHYGGRITLKDMSEELHLSPNYLCELFKRHTGKNLMEYVTEYRMMKAR 210 Query: 194 RLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 L + + +AE GY YF +TF++ YG+TP ++ Sbjct: 211 NYLNHVEYKVSDVAEMVGYKEAKYFSSTFKKMYGMTPLEYRNK 253 >UniRef50_B1YJP0 Two component transcriptional regulator, AraC family n=2 Tax=Bacillales RepID=B1YJP0_EXIS2 Length = 234 Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 50/98 (51%), Gaps = 1/98 (1%) Query: 139 GKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLE 197 ++ + IS A+ L+ ++ER Y S I ++ + + S + R++ A+ LL Sbjct: 133 DQIAKYISTHYAEELTLQLMSERFYLSREYISRRFKQRFSVNLSDYIQTIRLNRAKELLG 192 Query: 198 LRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 ++ IA + GY YF F++ +G+TP++F + Sbjct: 193 ETDARIYEIALEVGYHDDKYFRKVFKKQFGMTPNEFRE 230 >UniRef50_Q1N5F0 AraC-type DNA-binding domain-containing protein n=1 Tax=Bermanella marisrubri RepID=Q1N5F0_9GAMM Length = 339 Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 10/131 (7%) Query: 117 LSMFSHKKELIPLLFNSISTVSGK---------VERLISFDIAKR-WYLRDIAERMYTSE 166 + + H +L+ +L + K V + + + + L+D+AE + S Sbjct: 199 MPLMGHSPDLLKVLTGYADLIVLKKQKNAANEVVTQFVIDSLQHKVPTLQDVAEHLGVSA 258 Query: 167 SLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYY 226 +++K + + T F I+ R A L + IA+ G+S S F F+++ Sbjct: 259 RNLQRKFKQQGTNFKTIVDDIRKEYAFTYLLQTNYKMTYIAQILGFSEQSVFQRAFKRWT 318 Query: 227 GVTPHQFAQHS 237 G+TP ++ H Sbjct: 319 GMTPGEYRIHH 329 >UniRef50_A7B093 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B093_RUMGN Length = 413 Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 74/188 (39%), Gaps = 12/188 (6%) Query: 58 VCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCL 117 + + L++++ L + LL + + D+++ V + + S CL Sbjct: 223 ISNNLRDMKNYTITL-----NTLLRKAAEQAGVHPIHIDAYSNCNV-TMLESLTSATQCL 276 Query: 118 SM-----FSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKK 172 + + + S++ KV + D++ L +A+ + + S + Sbjct: 277 RAQQTIALGYCRIVKEHQHKIHSSIIRKVVAYLETDLSADLTLNTLAQHLGVNASYLSTL 336 Query: 173 LQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPH 231 E T + + R+ A+ LL +P+ IA +CG YF F++ G+TP Sbjct: 337 FTKEMGTSLTDYVNHYRIDHAKTLLANTDVPIKDIALRCGIGDVHYFTRLFKRISGMTPK 396 Query: 232 QFAQHSPG 239 + + + G Sbjct: 397 AWRESASG 404 >UniRef50_Q3KCK4 Putative transcriptional Regulator, AraC family n=1 Tax=Pseudomonas fluorescens Pf0-1 RepID=Q3KCK4_PSEPF Length = 332 Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 49/235 (20%), Positives = 91/235 (38%), Gaps = 5/235 (2%) Query: 9 LIRRSFDIYHEQQKISLHN--ESILLLEKNLADDFAFCSPDTRR-LDIDELTVCHYLQNI 65 L+ R F I+ + + L + LLL F + I + L + Sbjct: 94 LLTRYFHIHSDGALVQLERQAGNALLLYDVTDGTFISVRQTVELAMGIASCLLRELLGHA 153 Query: 66 RQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKE 125 Q L HS + + + N + +L+ L + ++ Sbjct: 154 WQPKSLLLRHSAPANRLAYRALLGVAPRFDSPVNAWVFDESLLTTPLSTTDARYQQLARQ 213 Query: 126 LIPLLFN-SISTVSGKVERLISFDIAK-RWYLRDIAERMYTSESLIKKKLQDENTCFSKI 183 I L ++ + +++ + ++A LRD+AE M S +++ L+ + + F + Sbjct: 214 HIDELARVTLEELPSYLQKRLRNELAHGPVTLRDMAEYMMISPRTLQRYLRAQGSGFQAL 273 Query: 184 LLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSP 238 L +R SMA R L + L +A GY+ S F F ++ GV+P Q+ Q Sbjct: 274 LDQTRRSMAARYLCDSSLSLTQVAGLLGYADLSAFSRAFTRWNGVSPQQWKQRMQ 328 >UniRef50_UPI0001C35C05 AraC family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35C05 Length = 511 Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 53/102 (51%), Gaps = 1/102 (0%) Query: 137 VSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRL 195 + +++ ++ + L DIAER+ + + + + E K + RM AR+L Sbjct: 405 IVERIKNIVRDEYRNDIGLEDIAERVNLAPAYLSYLFKKETGANLVKYITDYRMEQARKL 464 Query: 196 LELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 LE ++ + +A+ CGY + YF F+ YYG+TP Q+ + + Sbjct: 465 LEEGELKIVLVAKACGYENQPYFNRLFKNYYGMTPRQYREKN 506 >UniRef50_C6D7X2 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D7X2_PAESJ Length = 267 Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 58/118 (49%), Gaps = 1/118 (0%) Query: 120 FSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NT 178 + E + + + + +V + + + L+++AER S + + ++E Sbjct: 149 YQQLPENVSVEPGKHTKLIQEVTAYMKEHLNRSLTLKEVAERFAFSPNYLGLMFKEEMGV 208 Query: 179 CFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 FS+ ++ RM A LL+ ++ ++ +A++ GY YF F++ +G+TP F +H Sbjct: 209 GFSEYVITMRMERAGELLKDPKVKIYEVADQVGYRYMPYFSRQFKETFGMTPIDFRRH 266 >UniRef50_Q5WIX4 AraC/XylS family transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WIX4_BACSK Length = 765 Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 3/104 (2%) Query: 137 VSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENT--CFSKILLASRMSMARR 194 +S K+ I + L A ++ + + + + E T FS+ L R+ A+ Sbjct: 661 LSEKMIDYIHQHYHQAVTLEQCAADLHYNANYLSSVFK-EGTAMTFSEYLAQYRLKKAKE 719 Query: 195 LLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSP 238 L P+ TIAEK GY+++ FI +F++ G+TP Q+ Q Sbjct: 720 WLAKTSEPVKTIAEKLGYNNSQNFIRSFKKMTGMTPGQYRQQKQ 763 >UniRef50_A6GMI7 Putative transcriptional regulator, AraC family protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GMI7_9BURK Length = 340 Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 7/150 (4%) Query: 91 VTAIFDSFNESGVNSPILSNMLYLSCLSMFSH-----KKELIPLLFNSIST--VSGKVER 143 + FN S + L L H + +L LL + VS + Sbjct: 180 MFGCIPQFNASVNRATFDEQWLNLPLPKANEHSARFCETQLENLLSRRMQRGGVSAWLRN 239 Query: 144 LISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPL 203 + D++ L IA + +E ++++L DE T + +L R +MA LL + + Sbjct: 240 KLLADLSSSPSLAQIATDHFMTERTLRRRLTDEGTSYRDLLAEVRQTMAEELLSSTGLSV 299 Query: 204 HTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 ++ + GYSS S FI+ F++++ +P QF Sbjct: 300 SEVSARLGYSSPSAFIHAFQKWHNCSPRQF 329 >UniRef50_A5F2L6 Transcriptional regulator, AraC/XylS family n=33 Tax=Vibrionaceae RepID=A5F2L6_VIBC3 Length = 262 Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 83/222 (37%), Gaps = 16/222 (7%) Query: 20 QQKISLHNESILLLEKNLADDFAFCSPDT----RRLDIDELTVCHYLQNIRQLPRNLGLH 75 ++ H+ L+L N F R L + E ++ Q RN Sbjct: 43 DTTLNFHSADWLMLPANQYLTFVNVPQQAQFYSRTLTLHEAPPVEWITQSSQYERNEQPR 102 Query: 76 SKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSC-LSMFSHKKELIPLLFNSI 134 + + F+ E S ++ + LLF S Sbjct: 103 VR---------VTAELAYCFELLYEMNQQSLSEETQRQFVLGFYAQLRDEKALHLLFPSD 153 Query: 135 S-TVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMAR 193 + ++ ++ R +S + + ++ S + + + L E T F ++L RM+ A Sbjct: 154 NASMRERLARYLSVNPGDEHNIETVSAHFAMSRATLARHLAAEGTGFREVLSEVRMNYAL 213 Query: 194 RLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 LL+ + PL +A CGY S + F F+Q Y +TP+Q+ Q Sbjct: 214 ALLQELR-PLMEVAVACGYQSLTRFSARFKQQYRLTPYQYLQ 254 >UniRef50_A2PNS5 Transcriptional regulator, AraC family protein n=1 Tax=Vibrio cholerae MZO-3 RepID=A2PNS5_VIBCH Length = 267 Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 55/231 (23%), Positives = 106/231 (45%), Gaps = 16/231 (6%) Query: 16 IYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHY-----LQNIRQLPR 70 I + IL++ + D + + I E+ + L + + R Sbjct: 39 ILDNDESFHSKKNEILVILPS--QRITLNCKDIKEIKIMEIRKRCFEHPCSLLSNKDYLR 96 Query: 71 NLGLHSKDRLLINQSPPMPLVTAIFDSFNESG-----VNSPILSNMLYLSCLSMFSHKKE 125 + SK + + ++FD + ++ SN+L + +F K+ Sbjct: 97 YISGLSKIHAIPATMESINQFHSLFDKMKRTDEVVCDIDIIECSNILVSLLIEVFKSCKK 156 Query: 126 LIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILL 185 + I +S KV I +RW L +A+ +Y SES +K+KL+ E+ F+++ Sbjct: 157 TQQ---SPIGVISRKVLEKIIECPYERWSLSMMAKELYMSESTLKRKLKSEDQTFTELYN 213 Query: 186 ASRMSMARR-LLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 +RMS A++ LL R I + T+AE CG++ SYF++ F++Y+G++P + + Sbjct: 214 FARMSHAKKLLLSNRDIKIATVAEMCGFNHVSYFVSCFKKYFGLSPLVYKK 264 >UniRef50_UPI0001C36936 two component transcriptional regulator, AraC family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36936 Length = 527 Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 1/108 (0%) Query: 133 SISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSM 191 S S V + I ++ L+ +AE +Y + + +++ F + L R+ M Sbjct: 411 SRSPVIDRALVYIREHYSENITLQSLAEDIYLHPVYLSRLFKEKVGQTFLEYLTHYRIEM 470 Query: 192 ARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPG 239 A+ L + ++ I + GY + YF F++ G TP F + G Sbjct: 471 AKDYLRNPNLRIYDIGQMVGYETPQYFSRVFKELTGTTPKGFREELAG 518 >UniRef50_A4TFK9 Transcriptional regulator, AraC family n=11 Tax=Actinomycetales RepID=A4TFK9_MYCGI Length = 346 Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 54/106 (50%), Gaps = 1/106 (0%) Query: 132 NSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSM 191 + ++ S KV RL+ D +R + +A+ + S S +K++L +E T F ++ + Sbjct: 241 SGATSFSKKVRRLLDEDPGQR-SCQRVADELSVSTSTLKRRLAEEGTTFRELRQSCLRES 299 Query: 192 ARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 A LL R + IA + GY + F + F+++ G +P ++ + Sbjct: 300 AMMLLITRSMSASQIATELGYGDLANFSHAFKRWTGRSPSEYRRSQ 345 >UniRef50_C6IY72 Response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IY72_9BACL Length = 413 Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 55/106 (51%), Gaps = 2/106 (1%) Query: 132 NSISTVSGKVERLISFDIAKR-WYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRM 189 N++S + + ++ + + L +A+ + TS + + + ++ E T F+ L R+ Sbjct: 297 NAVSPLVRRAKQYMLEHFSNSGLTLEAMAQALQTSPAYLSRMIKQELGTTFNSYLTQLRI 356 Query: 190 SMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 A RLL ++ + IAE+ GY + YF F++ G++P Q+ + Sbjct: 357 RRASRLLIATELTIAEIAEQVGYETQHYFSTAFKRATGLSPLQYRK 402 >UniRef50_C6IVE2 Response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IVE2_9BACL Length = 215 Score = 117 bits (294), Expect = 2e-25, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 1/95 (1%) Query: 144 LISFDIAKRWYLRDIAERMYTSESLIKKKLQDEN-TCFSKILLASRMSMARRLLELRQIP 202 I + L ++ + + S + N FS+ L R++ A+ LL +P Sbjct: 116 YIEEHYGEPLTLSSLSRHFHFNPSYLSSYFSAHNDEGFSEYLNRVRIAKAKELLRSDGLP 175 Query: 203 LHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 + I + GYS SYF F++ G++P ++ + Sbjct: 176 ISEIGSRVGYSDPSYFTKVFKKQMGLSPREYRRQQ 210 >UniRef50_Q7MEL5 AraC-type DNA-binding domain-containing protein n=10 Tax=Vibrio RepID=Q7MEL5_VIBVY Length = 275 Score = 117 bits (294), Expect = 3e-25, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 80/183 (43%), Gaps = 6/183 (3%) Query: 56 LTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNES--GVNSPILSNMLY 113 +T+ +N+ L + + S + + D E + L Sbjct: 86 ITLLQKFRNVYPLSKIPAQQTD--TFFKFSGQHKRIDQLKDMLIEEVERKQNSQAQEHLA 143 Query: 114 LSCLSMFSHKK-ELIPLLFNSIS-TVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKK 171 L+ +++ K+ EL+ ++ + + + K+ + I +I + L +A+ M S + +K+ Sbjct: 144 LALMALMVEKQPELLNMIIRATQFSETQKIIQFIESNIEEEISLETLAKHMGMSTATLKR 203 Query: 172 KLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPH 231 +L E FS++L R+S A L + + TIA + G+ S ++F F+ +TP Sbjct: 204 RLAAEEMSFSQLLKIKRISHAATQLRVTDKSITTIAYESGFKSAAHFSTAFKAVQQMTPK 263 Query: 232 QFA 234 +F Sbjct: 264 EFR 266 >UniRef50_A9KQP4 Two component transcriptional regulator, AraC family n=2 Tax=Clostridiales RepID=A9KQP4_CLOPH Length = 533 Score = 117 bits (294), Expect = 3e-25, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 2/125 (1%) Query: 112 LYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKK 171 L+ + + + SISTV K + I + K L +++ ++ S K Sbjct: 406 LWFAERIEIACRNVENKKKVTSISTV-EKAKLYIRDNYQKDLSLEEVSRQVDISPYYFSK 464 Query: 172 KLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTP 230 ++E T F L RMS+A++LL + + I GYS +YF +F++ G+TP Sbjct: 465 VFKEETGTNFIDYLTELRMSVAKQLLLESERSMKEIGIMVGYSDPNYFSRSFKKNIGITP 524 Query: 231 HQFAQ 235 ++ + Sbjct: 525 TEYKE 529 >UniRef50_C4FUN9 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FUN9_9FIRM Length = 493 Score = 117 bits (294), Expect = 3e-25, Method: Composition-based stats. Identities = 41/196 (20%), Positives = 82/196 (41%), Gaps = 16/196 (8%) Query: 47 DTRRLDIDELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSP 106 ++ +LD D + + Q P+ + + LI + S + G N P Sbjct: 293 NSIKLDADLDSFLAFCQERELAPQEVVQLTA---LIRHYFDIKSNQHTPTSLLDEGANQP 349 Query: 107 ILSNMLYLSCLSMFSHKKELIPL-----LFNSISTVSGKVERLISFDIAKRWYLRDIAER 161 L + LS H KE + L + + +V I + ++ +A+ Sbjct: 350 -----LTFALLS--QHLKESLDLGGREKRHHLYPPIVNEVLAAIYERYNENISMKSLADD 402 Query: 162 MYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFIN 220 ++ + + + + E S+ + R+++A+ LL ++ + IA K GY + +YF Sbjct: 403 LHVNVMYLGQLFKREVGMTLSRYINQYRLAIAKDLLIASKLSVAQIAVKVGYQNQAYFYR 462 Query: 221 TFRQYYGVTPHQFAQH 236 F+Q GV+P ++ QH Sbjct: 463 VFKQSEGVSPKEYRQH 478 >UniRef50_Q47ZJ7 Transcriptional regulator, araC family n=2 Tax=Alteromonadales RepID=Q47ZJ7_COLP3 Length = 317 Score = 117 bits (294), Expect = 3e-25, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 2/147 (1%) Query: 92 TAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIP-LLFNSISTVSGKVERLISFDIA 150 I + N+ L+ +L++ L+ F K E + L K+ +LI Sbjct: 166 AEIIRTNNKKNSIIDRLTEVLFIQLLNSFIEKNEHLTGFLSALKEPRLNKILQLIHQHPE 225 Query: 151 KRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEK 209 ++W L I++ + S + +++K + + RM+ A +LL+ + L IA+ Sbjct: 226 RQWTLDIISDVVGMSRATLQRKFKAAIGVSPMVYISRWRMAKAYQLLKHSNLSLEGIADV 285 Query: 210 CGYSSTSYFINTFRQYYGVTPHQFAQH 236 G+S + F+ +YG TP QF + Sbjct: 286 IGFSDARTLSHAFKDHYGDTPSQFRKK 312 >UniRef50_Q1YPC6 Transcriptional regulator OruR n=4 Tax=unclassified Gammaproteobacteria (miscellaneous) RepID=Q1YPC6_9GAMM Length = 333 Score = 117 bits (294), Expect = 3e-25, Method: Composition-based stats. Identities = 28/99 (28%), Positives = 53/99 (53%) Query: 137 VSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLL 196 VS +V +L+ ++ +A++MY SES ++++L E T F +L R +A L Sbjct: 227 VSERVVQLLLLSGSEFPTAAAVAQQMYMSESTLQRRLTREGTRFQPLLDQVRYRLALEYL 286 Query: 197 ELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 + +P IA G+++++ F +F+++ G TP Q Sbjct: 287 QGTDLPAAEIAALLGFNNSANFRRSFKRWSGTTPLHIRQ 325 >UniRef50_D0IA59 Transcriptional regulator AraC family n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0IA59_VIBHO Length = 317 Score = 117 bits (294), Expect = 3e-25, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 52/123 (42%), Gaps = 1/123 (0%) Query: 113 YLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKK 172 L+ + ++ L + ++ +V+ I K +A S + +K Sbjct: 193 KLTVTMCVQSCENMLAAL-QATDDIAAQVQAFILQSPGKFPGAEQVASHFNCSLRTLNRK 251 Query: 173 LQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQ 232 L + + K+L +R ++A R L+ + + I+ G+S + F F+++ G TP + Sbjct: 252 LSESGQTYQKVLDNTRQNLAVRYLQQTSMKIEDISTLVGFSEPANFYKAFKKWTGKTPIE 311 Query: 233 FAQ 235 + Sbjct: 312 YRN 314 >UniRef50_Q8GA53 Putative CS12 fimbrial-like upstream regulatory protein n=3 Tax=Escherichia coli RepID=Q8GA53_ECOLX Length = 290 Score = 117 bits (294), Expect = 3e-25, Method: Composition-based stats. Identities = 57/224 (25%), Positives = 99/224 (44%), Gaps = 10/224 (4%) Query: 19 EQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPR-------- 70 + +I S++++ +N+ F R L + ++++ Sbjct: 60 DNTQIRCKRNSVVIVGRNVRISFMADQLYDRILRDTVFFDHTQIITLKKILSLAYGFSKI 119 Query: 71 NLGLHSKDRLLINQSPPMPLVTAIFDSFNE--SGVNSPILSNMLYLSCLSMFSHKKELIP 128 N D I + + + I +SF S + C L Sbjct: 120 NPLDFETDSPKIRKIISIEVNDRIKNSFYNIISEDSHHNRILSFIFFCKESSVMDAILPL 179 Query: 129 LLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASR 188 + F++ +T +V LI +IAK+W LR ++E SE I+KKL+ E F +++L R Sbjct: 180 IYFSAATTFCNRVIELIESNIAKKWTLRLLSEEFSISEIAIRKKLEAEGVIFRELILEIR 239 Query: 189 MSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQ 232 M A LL ++ + IA+K GY++ SYFI+ FRQ++G+TP Q Sbjct: 240 MKKAMTLLIAGELSVSKIADKVGYNNISYFISHFRQFFGMTPKQ 283 >UniRef50_C2BXH0 Response regulator n=1 Tax=Listeria grayi DSM 20601 RepID=C2BXH0_LISGR Length = 495 Score = 117 bits (294), Expect = 3e-25, Method: Composition-based stats. Identities = 39/199 (19%), Positives = 77/199 (38%), Gaps = 5/199 (2%) Query: 47 DTRRLDIDELTVCHYLQNIRQLP--RNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVN 104 R + + + +++ N H + I+ VT F + E Sbjct: 296 SIRDFETVQAEITKIFDTLKKSEALPNYTRHIVFLIFIDLYRQFETVTEHF--YQEHAEK 353 Query: 105 SPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYT 164 I N L + + + S V +I + ++ L+D+A R++ Sbjct: 354 IAISQNFEELQLVIEETITEIRAQKGKRQYSEHVQDVLAIIHNEYDQQLNLKDVANRLHM 413 Query: 165 SESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFR 223 + + + + E N FS+ L R+ A+ L ++ IA+K GY+S YF +F+ Sbjct: 414 NTMYVGQLFKKETNKSFSQYLHQYRIKKAQNFLVDTSDTINEIADKTGYTSAGYFYKSFK 473 Query: 224 QYYGVTPHQFAQHSPGTFS 242 + G++P +F + F Sbjct: 474 KICGISPKEFREQYQSNFD 492 >UniRef50_A1ZHS6 Transcriptional regulator, AraC family protein n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZHS6_9SPHI Length = 282 Score = 117 bits (294), Expect = 3e-25, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 76/173 (43%), Gaps = 11/173 (6%) Query: 63 QNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSH 122 Q++ +LP G+ M + A F++F+E+ L ++ LS H Sbjct: 115 QSMAKLPSGTGIERY----------MGSIAACFENFDEANQELMALKLKELVTVLSATQH 164 Query: 123 KKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD-ENTCFS 181 E+ +L N S + L++ ++ L+++A+ SES +K+ + + Sbjct: 165 APEVRAVLSNLFVPTSFTFQELVAANLYTNITLQELAQLASLSESSLKRMFKKVYQDSPA 224 Query: 182 KILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFA 234 L ++ ++ LL + + I CG++ ++F F+Q YGV+P + Sbjct: 225 SYLRHQKLLRSQELLTASNLSITQITLDCGFNDVAHFSKLFKQKYGVSPSAYR 277 >UniRef50_C0EDX0 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EDX0_9CLOT Length = 360 Score = 117 bits (294), Expect = 3e-25, Method: Composition-based stats. Identities = 44/245 (17%), Positives = 94/245 (38%), Gaps = 22/245 (8%) Query: 14 FDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDI------------DELTVCHY 61 ++ H Q+++++ ++ +LL+ N DT +I + + ++ Sbjct: 113 VNVVHRQERVTVDSKHVLLMNPNSRHLPLCDELDTIAFNIMLRRSFIEETVLNLIGGNNF 172 Query: 62 LQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNML---YLSCLS 118 + + +D L + + +V I E P ML + L Sbjct: 173 VYHFFLHSIYGENEMRDYLFLPVNDE--IVGHIHSIIREHCEEKPFYEQMLVSNLILLLG 230 Query: 119 MFSHKKELIPLLFNSISTVSGKVE---RLISFDIAKRWYLRDIAERMYTSESLIKKKLQD 175 F+ ++ L + SGK+ R I A L+ +AE S++ + + ++ Sbjct: 231 EFARIQKQETDLESERLVGSGKLTDMLRYIQLHYAT-VTLQSVAEHFSYSDAYLSRLIKK 289 Query: 176 E-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFA 234 E FS+I+ R A L+ + + I++ GY + F F++ GV+P + Sbjct: 290 ETGKSFSEIVSGIRFHTACNYLKHSTLTIEKISDIVGYQNVGNFFRAFKKNCGVSPSDYR 349 Query: 235 QHSPG 239 + + Sbjct: 350 KQNQA 354 >UniRef50_B8KNS6 Transcriptional regulator, AraC family n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KNS6_9GAMM Length = 248 Score = 117 bits (294), Expect = 3e-25, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 52/103 (50%) Query: 132 NSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSM 191 + + ++ ++ I ++ DIA + S+ + ++LQ+EN F +L R S+ Sbjct: 142 EGQTRLQREIRLILLGKIRQQPVALDIARELGLSKRSLYRRLQEENATFQGLLDDVRASV 201 Query: 192 ARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFA 234 A + L +P+ +A + G++ S F FR++ GVTP + Sbjct: 202 AIQFLSSTSLPVEEVAHRVGFADPSNFRKAFRRWTGVTPRSYR 244 >UniRef50_Q390J5 Transcriptional regulator, AraC family n=3 Tax=Burkholderia RepID=Q390J5_BURS3 Length = 339 Score = 117 bits (294), Expect = 3e-25, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 47/98 (47%) Query: 135 STVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARR 194 + +ER++ D+ L +IA ++ SE ++++L D+ + ++ R A Sbjct: 237 TEFLESIERIMRRDLRHAPSLAEIAAQLCMSERTLRRRLADQGVSYQTVIDTIRRKRAFT 296 Query: 195 LLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQ 232 LL ++ + +A + G+S F F+++ G P + Sbjct: 297 LLSNPRLSIEDVAHEVGFSDAHNFRRAFKRWTGHGPRE 334 >UniRef50_C6J2H9 Response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J2H9_9BACL Length = 535 Score = 117 bits (294), Expect = 3e-25, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 2/133 (1%) Query: 105 SPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYT 164 P+ L +S+ H + + S + + I + + + + DIA+ + Sbjct: 399 EPMSLKELLSIIVSLIEHARSSLSA-KKSTELLMMSAQNYIQNHLGRDFGIEDIADYLGI 457 Query: 165 SESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFR 223 S S ++ F + L RM MA+ LL + + I GY YF F+ Sbjct: 458 SSSYFCLLFKNHFGETFVEYLTKQRMEMAKCLLRTSERSIAQIGSSIGYQERRYFTKVFQ 517 Query: 224 QYYGVTPHQFAQH 236 +Y G+TP + Q Sbjct: 518 KYTGMTPSDYRQK 530 >UniRef50_B7GX20 Bacterial regulatory helix-turn-helix protein, AraC family protein n=8 Tax=Acinetobacter RepID=B7GX20_ACIB3 Length = 356 Score = 117 bits (294), Expect = 3e-25, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 82/227 (36%), Gaps = 12/227 (5%) Query: 15 DIYHEQQKISLHNESILLLEKNLAD--DFAFCSPDTRRLDIDELTVCHYLQNIRQLPRNL 72 Y + I+ L K L +F F S T + E + + Sbjct: 134 SFYIRDDVAIFEGQDIIALGKLLPLVCEFWFSSMQTLTERVLEGPFQAKKLLLPYPAPDY 193 Query: 73 GLHSKDRLLINQSPPMPLVTAIFDSFNESGV---NSPILSNMLYLSCLSMFSHKKELIPL 129 + ++ FD +PI ++M C M + P Sbjct: 194 AEEYEKVFHCPVQFNAGVMQWHFDLKWLDVPCPNANPITADMCKSFCERMLGAAELEEPE 253 Query: 130 LFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRM 189 L + + ++ +++AER++ S+ + ++L + + ++L +R Sbjct: 254 LVKT-------IRLILLDGTGLFPSAQEMAERLHMSKRTLHRRLAGFDLTYQELLDETRR 306 Query: 190 SMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 +A L + + IAE+ G+S TS F +R + G++P+++ Sbjct: 307 RLADEYLRETTLTVDEIAERIGFSDTSNFRKAYRHWTGISPNEYRIQ 353 >UniRef50_A6Y0W0 AraC-type DNA-binding domain-containing protein n=10 Tax=Vibrionaceae RepID=A6Y0W0_VIBCH Length = 328 Score = 117 bits (294), Expect = 3e-25, Method: Composition-based stats. Identities = 47/239 (19%), Positives = 100/239 (41%), Gaps = 19/239 (7%) Query: 21 QKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTV-CHYLQNIRQLPR--------N 71 ++LH +L+ D F S ++I ++ C +L +I Q N Sbjct: 90 DPMNLHQGKSVLIFSANVFDDVFISETGSYVEIADIRFECQFLASIYQQMGDSLRANGIN 149 Query: 72 LGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLF 131 + + + ++ + ++ + + CL+ K + I Sbjct: 150 PLTEKRRFVFDTRVEMQKFISQLQVGLSKQCGTENLYAVSQAYQCLAKLLSKLDSIQCDK 209 Query: 132 NSISTVS------GKVER---LISFDIAKRWYLRDIAERMYTSESLIKKKLQD-ENTCFS 181 + S ++ + +++ + K W + ++ ++ T+E+ K+ + NT FS Sbjct: 210 KCHDSSSISNRTLNRIRQAHAMMASEPEKNWSIGELCRQVGTNETSFKRGFKLLFNTTFS 269 Query: 182 KILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGT 240 K+L +RM +A +L P+ IA + GY+S S+F F+Q++GV P Q+ ++ T Sbjct: 270 KLLQHTRMKIAAEVLRHSDQPIIDIAYQVGYTSPSHFSKLFKQHFGVNPLQYRKNGQTT 328 >UniRef50_P23774 987P fimbrial operon positive regulatory protein fapR n=1 Tax=Escherichia coli RepID=FAPR_ECOLX Length = 260 Score = 117 bits (293), Expect = 3e-25, Method: Composition-based stats. Identities = 58/238 (24%), Positives = 111/238 (46%), Gaps = 10/238 (4%) Query: 6 SVILIRRSFDIYHEQ--QKISLHNESILLLEKNLADDFAFCSPDTRRL----DIDELTVC 59 V++ ++ +IY + +++ + + + EKN++ + L D+ + Sbjct: 11 YVVIYTKNCEIYINKGNEQVYIPPRMVAIFEKNISFNIETIRKGDGVLYESFDMKHELLT 70 Query: 60 HYLQNIRQLPRNLG-LHSKDRLLINQSPPMPLVTAIFDSFNESGVN-SPILSNMLYLSCL 117 + I + ++ R + + + + D F N SP + + L+ L Sbjct: 71 SLRRVIEPSVKFAAESYTNKRSFKERIFKVKSCSIVIDLFKRLKDNGSPEFTAIYELAFL 130 Query: 118 SMFSHKKEL--IPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD 175 + I L + T S ++ L+ D+ ++W L DIAE M+ SE ++K+L+ Sbjct: 131 VSKCENPSMFAISLFSSVAVTFSERIVTLLFSDLTRKWKLSDIAEEMHISEISVRKRLEQ 190 Query: 176 ENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 E F++++L RM+ A + + + IA GY+S SYFI TF++YYGVTP +F Sbjct: 191 ECLNFNQLILDVRMNQAAKFIIRSDHQIGMIASLVGYTSVSYFIKTFKEYYGVTPKKF 248 >UniRef50_UPI0001789626 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789626 Length = 305 Score = 117 bits (293), Expect = 3e-25, Method: Composition-based stats. Identities = 38/240 (15%), Positives = 94/240 (39%), Gaps = 17/240 (7%) Query: 10 IRRSFDIYHEQ--QKISLHNESILLLEKNLADDFAF---CSPDTRRLDIDELTVCHYLQN 64 + R D+ + + L ++L+ + S ++ + + Sbjct: 49 VCR-IDVKAGDTEKSVILKKGEFMVLDAGVPHRLIVDQAASCRMLNVEFGFMESEGMAPS 107 Query: 65 IRQLPRN-----LGLHSKDRLLI--NQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCL 117 +R + L R L+ +Q P++ ++ ++ G + ++++ L++ L Sbjct: 108 LRHIVGEEEEVSFLLKRPFRYLVLADQEEVYPVLKSLVLELDQRGTDGRMMTHALFIQLL 167 Query: 118 SMFS--HKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD 175 + +++ + S + V + + ++ ++D+A + + + + Sbjct: 168 VCIARLYEERERSDMQQSDFYIKRSV-DYLHQNYDRQIQVKDVAAEVNLHPGYLHRVFRR 226 Query: 176 -ENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFA 234 ++ L RM A+ LLE IP+H I++ G S YF F++Y G TP ++ Sbjct: 227 GTGRTITEYLTTIRMEKAKMLLEQTDIPIHEISDYVGVGSRQYFHMLFKKYTGSTPVEYR 286 >UniRef50_B8I425 Two component transcriptional regulator, AraC family n=2 Tax=Clostridium RepID=B8I425_CLOCE Length = 538 Score = 117 bits (293), Expect = 3e-25, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 82/212 (38%), Gaps = 9/212 (4%) Query: 24 SLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRNLGLHSKDRLLIN 83 ++ + + L +++N + + + + L +I + ++ ++ Sbjct: 331 NIKSGNELGVKENTKLISDYLTNNNINIHYMRNFYYTTLSSINNIRISVSSVDTEKKYSE 390 Query: 84 QSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVER 143 L+ I + +NS + + ++ ++ SI + K Sbjct: 391 GEDIASLIKLIEKTDKAEELNSLLEEVAVRIA--------SKVNSFNNKSIKLILRKAID 442 Query: 144 LISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIP 202 I ++ L ++AE +Y S I + + E F L R+ A+ LL+ + Sbjct: 443 YIQEHYNEQVTLNEVAENIYVSTFYISRMFKKELGKSFVDYLNDVRIDKAKELLKDVRYK 502 Query: 203 LHTIAEKCGYSSTSYFINTFRQYYGVTPHQFA 234 + +AEK G S YF F++Y G+TP ++ Sbjct: 503 TYEVAEKVGISDPHYFSKLFKKYSGMTPSEYR 534 >UniRef50_B9MLQ2 Two component transcriptional regulator, AraC family n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MLQ2_ANATD Length = 519 Score = 117 bits (293), Expect = 3e-25, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 70/186 (37%), Gaps = 9/186 (4%) Query: 53 IDELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNML 112 I+ + + +L L L + L++ I +S E + + Sbjct: 336 IELFGENNLKYKVIKLIIMLLLETGIATSDESIDVEKLISQILNSSYEQ------IVEIF 389 Query: 113 YLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKK 172 + LS+FS K + N+ S K I+ + ++ L I+ + K Sbjct: 390 KKAVLSLFSKAKTKHEQIINNDS--INKAIEFINQNYSEEITLSQISSTFNFNPYYFSKL 447 Query: 173 LQD-ENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPH 231 + F L R+ A +LL+ + I+ G+S +YFI F+++ G+TP Sbjct: 448 FKKYTGVSFKTYLTKLRIQKACQLLKNTSKSIKEISFAVGFSDPNYFIKAFKKFTGMTPS 507 Query: 232 QFAQHS 237 F S Sbjct: 508 AFRSSS 513 >UniRef50_B5R1L9 Fimbrial operon positive regulatory protein n=11 Tax=Salmonella enterica subsp. enterica RepID=B5R1L9_SALEP Length = 271 Score = 117 bits (293), Expect = 4e-25, Method: Composition-based stats. Identities = 61/225 (27%), Positives = 105/225 (46%), Gaps = 17/225 (7%) Query: 21 QKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQN-----------IRQLP 69 ++I + +I L+EKN+ D D +T+ L + L Sbjct: 33 EEIKITRGNIALIEKNIEAVVEIEYMDDIE-SFDIITLPDELLSRVLCLFEASNCSESLS 91 Query: 70 RNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPL 129 D++ I + + +F+ + N+ + + S ++ ++L Sbjct: 92 PIRYRTFSDKVFIITDNGINGI--LFEYLKKRKNNNNDIYEIA--CLFSKVNNIEQLYTS 147 Query: 130 LFNSIS-TVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASR 188 L S+S + S V + I DI+ +W L+ ++E++ SE I+KKL++ENT F +ILL +R Sbjct: 148 LCISVSRSFSDIVRKTIDNDISTKWRLKTLSEKLNLSEVTIRKKLENENTNFYRILLDAR 207 Query: 189 MSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 M A RL+ ++ ++ G SS SYFI F YYG+TP QF Sbjct: 208 MQKAARLVLDSDTHINKVSYAVGMSSVSYFIKLFSDYYGLTPKQF 252 >UniRef50_B6B8R5 Transcriptional regulator, AraC family n=1 Tax=Rhodobacterales bacterium Y4I RepID=B6B8R5_9RHOB Length = 338 Score = 117 bits (293), Expect = 4e-25, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 2/139 (1%) Query: 98 FNESGVNSPILS-NMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRW-YL 155 F ++ P+ S + L L L F + L S ++ +VE +S ++ L Sbjct: 198 FKPEDLDLPLASGDRLLLRVLRAFGDQMLHGRGLGRKSSDLTAQVEEAVSARLSGGTASL 257 Query: 156 RDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSST 215 ++A + S + +KL T + +L R ++A R L ++PL IA GYS Sbjct: 258 ANVAADLGMSPRTLSRKLARAGTSYFTVLEELRKALAIRYLRETRLPLSEIAFLLGYSGL 317 Query: 216 SYFINTFRQYYGVTPHQFA 234 + F FR++ G +P QF Sbjct: 318 NSFSEAFRRWTGQSPGQFR 336 >UniRef50_A4XMG0 Two component transcriptional regulator, AraC family n=2 Tax=Thermoanaerobacterales RepID=A4XMG0_CALS8 Length = 529 Score = 117 bits (293), Expect = 4e-25, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 78/207 (37%), Gaps = 4/207 (1%) Query: 34 EKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQ--LPRNLGLHSKDRLLINQSPPMPLV 91 E+++ + C D + ++ Y N ++ L L+ + Sbjct: 323 ERSIINSLLLCQKDVIKDKVESFINSLYSTNTFNKWFIKSAVLALLGSLIKVCHEKCIDL 382 Query: 92 TAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAK 151 + S + ++ S LS + + I + N V + I + K Sbjct: 383 NDVVSSKIFENILKTEKKELIKASLLSFLNATVDKIEQIENKNLIVKAAIS-FIEKNYNK 441 Query: 152 RWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKC 210 L +A+ +Y + + + + E F L R+ A+ LL+ + + + +A Sbjct: 442 NITLESVAKEVYVTPAYLSILFKRELKINFVDYLHKIRIQKAQELLKNQNLKTYQVANMV 501 Query: 211 GYSSTSYFINTFRQYYGVTPHQFAQHS 237 G+S YF F++Y G+TP QF + + Sbjct: 502 GFSDEKYFSQVFKKYTGLTPSQFREAN 528 >UniRef50_Q21KL2 Transcriptional regulator, AraC family n=5 Tax=Proteobacteria RepID=Q21KL2_SACD2 Length = 270 Score = 117 bits (293), Expect = 4e-25, Method: Composition-based stats. Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 1/151 (0%) Query: 86 PPMPLVTAIFDSFNESGVNSPI-LSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERL 144 PL+ F E +P L ++ L H ++S KV + Sbjct: 115 EITPLLEGTLQQFIEWAAIAPAELWHIRRQELLQTLFHLGYTQVCSIAGAPSLSAKVHAI 174 Query: 145 ISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLH 204 IS D+ W + I +++ SES I++KL E T + ++R+S ++ P++ Sbjct: 175 ISTDLTYDWTMDVITQKLAMSESTIRRKLTAEGTSLQAVKDSARLSFGLHQVQSTFQPIN 234 Query: 205 TIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 IAE+CGY S S F N F+Q +GVTP + Sbjct: 235 HIAEQCGYLSQSRFTNKFKQLFGVTPTALRK 265 >UniRef50_C2LMQ1 Virulence regulon transcriptional activator VirF n=1 Tax=Proteus mirabilis ATCC 29906 RepID=C2LMQ1_PROMI Length = 263 Score = 117 bits (293), Expect = 4e-25, Method: Composition-based stats. Identities = 56/225 (24%), Positives = 108/225 (48%), Gaps = 24/225 (10%) Query: 7 VILIRRS--FDIYHEQQKISLHNESILLLEKNLADD----------FAFCSPDTRRLDID 54 ++LIR+ I + K + N+SI+ ++KN A D F F S + +++ Sbjct: 21 LLLIRKDCEISITKDNVKYQIDNDSIVFIKKNSALDIILGKNKMPEFIFLSHEV-MMEVL 79 Query: 55 ELTVCHYLQNIRQLPRNLGLHSKDRLLINQ-SPPMPLVTAIFDSFNESGV--NSPILSNM 111 ++T+ + + + Q ++KD + + + + FN+ + N LS + Sbjct: 80 KITINNKKEEVTQ------DNNKDSFIKQANHEDILFFNRLKNKFNDEVITNNKTSLSQI 133 Query: 112 LYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKK 171 L ++ L + LI +++V KV+ +I D+ W L++I+ +++ SES ++K Sbjct: 134 LKIAYLLLNFDIPNLILKSKPELTSV--KVKDIIISDLQHSWSLKEISSKLFISESSLRK 191 Query: 172 KLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTS 216 KL+ E T F +L RM+ A LL + + I+ GY +TS Sbjct: 192 KLEAEKTNFMTLLTTVRMAHAMNLLATTNLTIGQISSLSGYKNTS 236 >UniRef50_C7PMQ7 Transcriptional regulator, AraC family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PMQ7_CHIPD Length = 331 Score = 117 bits (293), Expect = 4e-25, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 1/103 (0%) Query: 135 STVSGKVERLISFDIAKRW-YLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMAR 193 + K+ + + + L +IA S +++KL++E + + R S+A Sbjct: 229 DSFKEKIHQYLLTNAYLGIRSLSEIAANFNVSPRTLQRKLKEEGISYQDVADEVRKSLAI 288 Query: 194 RLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 LE P+ TI+ GY+ S F F+++ G TP + ++ Sbjct: 289 HYLEEGDYPVKTISYMLGYNELSAFTRAFKRWTGKTPVSYQKN 331 >UniRef50_C2H3H7 Response regulator n=23 Tax=Enterococcus faecalis RepID=C2H3H7_ENTFA Length = 493 Score = 117 bits (293), Expect = 4e-25, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 75/165 (45%), Gaps = 11/165 (6%) Query: 82 INQSPPMPL---VTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVS 138 I++ P L I + S + + + L L+ +K P + +VS Sbjct: 332 ISRQYPTVLEENYEKIVEEIRASNNLNTLYA--LMQQVLAEVKNK----PKIKKYSESVS 385 Query: 139 GKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENT-CFSKILLASRMSMARRLLE 197 VER I + L+ +A+ ++ + S + + + E FS+ L R A++LL Sbjct: 386 QAVER-IEQGYLEELNLKTVADELHLNPSYLGQIFKKETKRSFSQYLNQVRTKHAQKLLL 444 Query: 198 LRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGTFS 242 ++ I+EK G+++T+YF F++ G+TP +F + ++ Sbjct: 445 YTDDTINEISEKVGFNNTNYFSKMFKKLNGITPKEFREQYQSNYA 489 >UniRef50_A9U8F0 Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U8F0_PHYPA Length = 244 Score = 117 bits (293), Expect = 4e-25, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 56/127 (44%), Gaps = 11/127 (8%) Query: 119 MFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRD-----------IAERMYTSES 167 S+ +EL+ +L ++ + +R SF +W L+ +A + S+ Sbjct: 19 FLSYNEELLDILTPALDRSLDEQQRNRSFPETVKWILKRSLTAGRPDIQAVARELGMSDR 78 Query: 168 LIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYG 227 ++++L +ENT F +L +R AR L + + +A GY + F FR + G Sbjct: 79 TLQRRLTEENTSFKHLLTQARHEQAREYLADPSLDIKEVAFLVGYEDQNSFYRAFRLWEG 138 Query: 228 VTPHQFA 234 TP + Sbjct: 139 NTPSHWR 145 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P63202 HTH-type transcriptional regulator gadW n=57 Tax... 234 3e-60 UniRef50_B7LQH4 GadW HTH-type(AraC-type) transcriptional positiv... 209 7e-53 UniRef50_C6UHW7 Putative AraC-type regulatory protein encoded in... 190 3e-47 UniRef50_B7M6J8 Putative AraC-type regulatory protein encoded in... 189 9e-47 UniRef50_P05052 HTH-type transcriptional regulator appY n=6 Tax=... 186 6e-46 UniRef50_Q83RF4 HTH-type transcriptional regulator ydeO n=59 Tax... 185 8e-46 UniRef50_C6UPG2 Putative envelope protein encoded within prophag... 172 7e-42 UniRef50_A7ZH67 HTH-type transcriptional regulator YdeO n=2 Tax=... 169 8e-41 UniRef50_Q93SE2 Putative uncharacterized protein n=1 Tax=Escheri... 162 1e-38 UniRef50_C6LLK3 Putative two-component response regulator n=1 Ta... 155 1e-36 UniRef50_C4Z204 AraC family transcriptional regulator, L-rhamnos... 155 2e-36 UniRef50_C9KMM6 Putative AraC-type DNA-binding domain-containing... 153 4e-36 UniRef50_Q5WL10 AraC/XylS family transcriptional regulator n=1 T... 153 4e-36 UniRef50_B7LQH5 HTH-type transcriptional regulator gadX for glut... 153 5e-36 UniRef50_A7VRD3 Putative uncharacterized protein n=1 Tax=Clostri... 152 7e-36 UniRef50_UPI0001745884 transcriptional regulator n=1 Tax=Verruco... 152 8e-36 UniRef50_C9RVZ3 Two component transcriptional regulator, AraC fa... 152 9e-36 UniRef50_UPI0001C356F7 AraC family transcriptional regulator n=1... 151 2e-35 UniRef50_B0MKI2 Putative uncharacterized protein n=1 Tax=Eubacte... 151 2e-35 UniRef50_UPI000178AA55 transcriptional regulator, AraC family n=... 151 2e-35 UniRef50_Q2RGN4 Two component transcriptional regulator, AraC fa... 148 1e-34 UniRef50_C0FP55 Putative uncharacterized protein n=1 Tax=Rosebur... 148 1e-34 UniRef50_C6JEP4 Two component transcriptional regulator n=3 Tax=... 148 1e-34 UniRef50_C0EDX0 Putative uncharacterized protein n=1 Tax=Clostri... 147 3e-34 UniRef50_C6LL87 Transcriptional regulator, AraC family n=1 Tax=B... 147 3e-34 UniRef50_A8SQD4 Putative uncharacterized protein n=2 Tax=Coproco... 146 5e-34 UniRef50_C5D8H7 Two component transcriptional regulator, AraC fa... 146 5e-34 UniRef50_A4XWL1 Transcriptional regulator, AraC family n=5 Tax=B... 146 6e-34 UniRef50_B7GJK9 DNA-binding response regulator (Contains REC and... 146 7e-34 UniRef50_A1HM14 Two component transcriptional regulator, AraC fa... 146 8e-34 UniRef50_UPI0001C3766F two-component response regulator n=2 Tax=... 146 8e-34 UniRef50_C0CVY3 Putative uncharacterized protein n=1 Tax=Clostri... 146 9e-34 UniRef50_A3DHI5 Transcriptional regulator, AraC family n=5 Tax=C... 145 9e-34 UniRef50_C0EIL7 Putative uncharacterized protein n=1 Tax=Clostri... 145 9e-34 UniRef50_C9KMJ8 Methylphosphotriester-DNA alkyltransferase n=1 T... 145 1e-33 UniRef50_C6CSY2 Two component transcriptional regulator, AraC fa... 145 1e-33 UniRef50_P33234 HTH-type transcriptional regulator adiY n=102 Ta... 145 2e-33 UniRef50_Q2SCQ2 AraC-type DNA-binding domain-containing protein ... 145 2e-33 UniRef50_C5ETL2 Two component transcriptional regulator n=1 Tax=... 145 2e-33 UniRef50_UPI0001789626 transcriptional regulator, AraC family n=... 144 2e-33 UniRef50_UPI0001789C33 transcriptional regulator, AraC family n=... 144 2e-33 UniRef50_C1I9Z9 AraC family transcriptional regulator n=1 Tax=Cl... 144 2e-33 UniRef50_D1PMJ1 Transcriptional regulator, AraC family n=2 Tax=R... 144 2e-33 UniRef50_Q9EYV5 HTH-type transcriptional regulator gadX n=60 Tax... 144 2e-33 UniRef50_D0YX71 Transcriptional regulator AraC family protein n=... 143 5e-33 UniRef50_A7VID9 Putative uncharacterized protein n=4 Tax=Clostri... 143 5e-33 UniRef50_C6JCU7 Transcriptional regulator n=3 Tax=Ruminococcus R... 143 6e-33 UniRef50_C6QRS7 Two component transcriptional regulator, AraC fa... 143 6e-33 UniRef50_D2THV7 AraC-family transcriptional regulator n=6 Tax=En... 143 6e-33 UniRef50_C6LLM9 Two-component response regulator n=1 Tax=Bryante... 143 7e-33 UniRef50_B8I425 Two component transcriptional regulator, AraC fa... 142 8e-33 UniRef50_C6LGW7 DNA-binding response regulator n=1 Tax=Bryantell... 142 8e-33 UniRef50_B7AP83 Putative uncharacterized protein n=1 Tax=Bactero... 142 8e-33 UniRef50_UPI0001788F54 two component transcriptional regulator, ... 142 8e-33 UniRef50_A4XJ07 Transcriptional regulator, AraC family n=2 Tax=C... 142 8e-33 UniRef50_A0Q2M6 Transcriptional regulatory protein n=6 Tax=Clost... 142 8e-33 UniRef50_C9LA22 Transcriptional regulator, AraC family n=2 Tax=C... 142 8e-33 UniRef50_B0K3C5 Response regulator receiver protein n=4 Tax=Ther... 142 9e-33 UniRef50_A6GTF7 Putative transcriptional regulator n=1 Tax=Limno... 142 9e-33 UniRef50_C6D5P5 Transcriptional regulator, AraC family n=1 Tax=P... 142 1e-32 UniRef50_UPI0001788C4E two component transcriptional regulator, ... 142 1e-32 UniRef50_B5YFJ6 Transcriptional regulator, putative n=2 Tax=Dict... 142 1e-32 UniRef50_C0EDY4 Putative uncharacterized protein n=1 Tax=Clostri... 142 1e-32 UniRef50_C0EGN7 Putative uncharacterized protein n=1 Tax=Clostri... 141 1e-32 UniRef50_C6J070 Two component transcriptional regulator n=1 Tax=... 141 1e-32 UniRef50_UPI0001B9ECE6 two component transcriptional regulator, ... 141 1e-32 UniRef50_Q2BDI9 Two-component response regulator n=2 Tax=Firmicu... 141 1e-32 UniRef50_C6IYL2 Two component transcriptional regulator n=1 Tax=... 141 1e-32 UniRef50_C0FTY3 Putative uncharacterized protein n=1 Tax=Rosebur... 141 1e-32 UniRef50_C6IYS4 Response regulator n=1 Tax=Paenibacillus sp. ora... 141 2e-32 UniRef50_A9KLS8 Transcriptional regulator, AraC family n=1 Tax=C... 141 2e-32 UniRef50_A6NS86 Putative uncharacterized protein n=1 Tax=Bactero... 141 2e-32 UniRef50_C0CH60 Putative uncharacterized protein n=1 Tax=Blautia... 141 2e-32 UniRef50_Q2BYZ8 Transcriptional regulator, AraC family protein n... 141 2e-32 UniRef50_B2I0Q2 AraC-type DNA-binding domain-containing protein ... 141 2e-32 UniRef50_A8RTE5 Putative uncharacterized protein n=2 Tax=Clostri... 141 2e-32 UniRef50_C6CTP9 Two component transcriptional regulator, AraC fa... 141 2e-32 UniRef50_A8RIS8 Putative uncharacterized protein n=1 Tax=Clostri... 141 2e-32 UniRef50_C6D5X4 Two component transcriptional regulator, AraC fa... 141 2e-32 UniRef50_B0ABU8 Putative uncharacterized protein n=1 Tax=Clostri... 141 2e-32 UniRef50_C4FUL3 Putative uncharacterized protein n=2 Tax=Catonel... 141 2e-32 UniRef50_C0E8H9 Putative uncharacterized protein n=1 Tax=Clostri... 141 3e-32 UniRef50_B0NDZ7 Putative uncharacterized protein n=1 Tax=Clostri... 141 3e-32 UniRef50_B3EYL7 Two-component response regulator n=5 Tax=Firmicu... 140 3e-32 UniRef50_B5XY24 Transcriptional regulator, AraC family n=3 Tax=K... 140 3e-32 UniRef50_A7AA81 Putative uncharacterized protein n=1 Tax=Parabac... 140 3e-32 UniRef50_B0MM97 Putative uncharacterized protein n=1 Tax=Eubacte... 140 4e-32 UniRef50_C6D710 Transcriptional regulator, AraC family n=1 Tax=P... 140 4e-32 UniRef50_C6CWB0 Two component transcriptional regulator, AraC fa... 140 5e-32 UniRef50_C4L9U6 Transcriptional regulator, AraC family n=1 Tax=T... 140 5e-32 UniRef50_C6CVC0 Two component transcriptional regulator, AraC fa... 140 5e-32 UniRef50_C4Z0X2 Two-component system, response regulator YesN n=... 140 5e-32 UniRef50_C7G755 Transcriptional regulator, AraC family n=1 Tax=R... 140 5e-32 UniRef50_C0EAY1 Putative uncharacterized protein n=1 Tax=Clostri... 140 5e-32 UniRef50_Q7NTA1 Putative uncharacterized protein n=1 Tax=Chromob... 140 5e-32 UniRef50_Q5WIX4 AraC/XylS family transcriptional regulator n=1 T... 140 5e-32 UniRef50_B5ZYE2 Transcriptional regulator, AraC family n=12 Tax=... 140 5e-32 UniRef50_UPI0001BC2F1F 2-isopropylmalate synthase n=1 Tax=Butyri... 140 6e-32 UniRef50_B8FMW7 Transcriptional regulator, AraC family n=1 Tax=D... 139 6e-32 UniRef50_A4XHB8 Two component transcriptional regulator, AraC fa... 139 7e-32 UniRef50_C6D3S3 Two component transcriptional regulator, AraC fa... 139 7e-32 UniRef50_B0K234 Response regulator receiver protein n=8 Tax=Ther... 139 7e-32 UniRef50_A4XFU2 Two component transcriptional regulator, AraC fa... 139 7e-32 UniRef50_Q4V1B1 MSM (Multiple sugar metabolism) operon regulator... 139 8e-32 UniRef50_UPI000178921D transcriptional regulator, AraC family n=... 139 8e-32 UniRef50_UPI0001C358FB two component transcriptional regulator, ... 139 9e-32 UniRef50_Q65QI0 AraC protein n=1 Tax=Mannheimia succiniciproduce... 139 1e-31 UniRef50_B9MLQ2 Two component transcriptional regulator, AraC fa... 139 1e-31 UniRef50_C6CVB2 Two component transcriptional regulator, AraC fa... 138 1e-31 UniRef50_C0EGI4 Putative uncharacterized protein n=1 Tax=Clostri... 138 1e-31 UniRef50_C6IY53 Two component transcriptional regulator n=1 Tax=... 138 1e-31 UniRef50_C0EDW5 Putative uncharacterized protein n=1 Tax=Clostri... 138 1e-31 UniRef50_Q0TS97 Transcriptional regulator, AraC family n=6 Tax=C... 138 1e-31 UniRef50_B5XZ22 Transcriptional regulator, AraC family n=7 Tax=E... 138 1e-31 UniRef50_A8S8Z3 Putative uncharacterized protein n=1 Tax=Faecali... 138 1e-31 UniRef50_UPI0001789612 two component transcriptional regulator, ... 138 1e-31 UniRef50_Q5WK40 Two-component response regulator n=1 Tax=Bacillu... 138 1e-31 UniRef50_C0ECN2 Putative uncharacterized protein n=1 Tax=Clostri... 138 1e-31 UniRef50_C6CT83 Two component transcriptional regulator, AraC fa... 138 2e-31 UniRef50_C6CTL6 Two component transcriptional regulator, AraC fa... 138 2e-31 UniRef50_UPI0001788C2F two component transcriptional regulator, ... 138 2e-31 UniRef50_A6AXU3 Transcriptional regulator, AraC family protein n... 138 2e-31 UniRef50_UPI0001C3678C two component transcriptional regulator, ... 138 2e-31 UniRef50_B8CZL9 Response regulator receiver protein n=1 Tax=Halo... 138 2e-31 UniRef50_A5Z7W7 Putative uncharacterized protein n=1 Tax=Eubacte... 138 2e-31 UniRef50_C6CRZ9 Two component transcriptional regulator, AraC fa... 138 2e-31 UniRef50_Q9K9C1 Two-component response regulator n=1 Tax=Bacillu... 138 2e-31 UniRef50_UPI0001BC838F helix-turn-helix- domain containing prote... 138 2e-31 UniRef50_C6D6F5 Transcriptional regulator, AraC family n=1 Tax=P... 138 2e-31 UniRef50_C6CT15 Two component transcriptional regulator, AraC fa... 137 3e-31 UniRef50_Q9K690 Two-component response regulator n=1 Tax=Bacillu... 137 3e-31 UniRef50_B5JUK1 AraC-type DNA-binding domain-containing protein ... 137 3e-31 UniRef50_A6CLV0 AraC-type DNA-binding domain-containing protein ... 137 3e-31 UniRef50_C6J0N4 Response regulator n=1 Tax=Paenibacillus sp. ora... 137 3e-31 UniRef50_A1RF43 Transcriptional regulator, AraC family n=2 Tax=S... 137 3e-31 UniRef50_C2BXH0 Response regulator n=1 Tax=Listeria grayi DSM 20... 137 4e-31 UniRef50_C6CZ56 Two component transcriptional regulator, AraC fa... 137 4e-31 UniRef50_B1BNT9 Transcriptional regulator, AraC family n=4 Tax=C... 137 4e-31 UniRef50_UPI0001C3522D two-component system, response regulator ... 136 4e-31 UniRef50_C5BHZ4 Helix-turn-helix-domain containing protein, AraC... 136 4e-31 UniRef50_C0C1J0 Putative uncharacterized protein n=1 Tax=Clostri... 136 4e-31 UniRef50_B9XAQ1 Transcriptional regulator, AraC family n=2 Tax=V... 136 4e-31 UniRef50_D0MC89 Putative AraC-type regulatory protein n=3 Tax=Vi... 136 5e-31 UniRef50_C6IZ62 Transcriptional regulator n=1 Tax=Paenibacillus ... 136 5e-31 UniRef50_A5Z9N2 Putative uncharacterized protein n=2 Tax=Clostri... 136 5e-31 UniRef50_C7H973 Methylphosphotriester-DNA alkyltransferase n=2 T... 136 5e-31 UniRef50_C5RGS5 Transcriptional regulator, AraC family n=1 Tax=C... 136 5e-31 UniRef50_C4Z7U7 LacI family transcriptional regulator n=1 Tax=Eu... 136 5e-31 UniRef50_P32677 Uncharacterized HTH-type transcriptional regulat... 136 5e-31 UniRef50_UPI0001788789 transcriptional regulator, AraC family n=... 136 5e-31 UniRef50_C3SIM7 Membrane protein n=86 Tax=Enterobacteriaceae Rep... 136 5e-31 UniRef50_C6D3K6 Transcriptional regulator, AraC family n=1 Tax=P... 136 6e-31 UniRef50_Q1ZUP8 Transcriptional regulator, AraC family protein n... 136 6e-31 UniRef50_A8RW54 Putative uncharacterized protein n=1 Tax=Clostri... 136 7e-31 UniRef50_UPI0001C36936 two component transcriptional regulator, ... 136 7e-31 UniRef50_B2HYH2 AraC-type DNA-binding domain-containing protein ... 136 7e-31 UniRef50_C6J1Q8 Two component transcriptional regulator n=1 Tax=... 136 7e-31 UniRef50_Q5E3W4 Transcriptional regulator, AraC family n=1 Tax=V... 136 7e-31 UniRef50_A8RUC8 Putative uncharacterized protein n=1 Tax=Clostri... 136 7e-31 UniRef50_Q65NG7 Putative uncharacterized protein n=1 Tax=Bacillu... 136 9e-31 UniRef50_UPI0001B9ED63 transcriptional regulator, AraC family n=... 135 9e-31 UniRef50_Q1N3I2 AraC-type DNA-binding domain-containing protein ... 135 9e-31 UniRef50_C6CZ23 Two component transcriptional regulator, AraC fa... 135 9e-31 UniRef50_C4ZAF9 2-isopropylmalate synthase n=2 Tax=Eubacterium R... 135 9e-31 UniRef50_C0EIK7 Putative uncharacterized protein n=1 Tax=Clostri... 135 9e-31 UniRef50_C6IVE2 Response regulator n=1 Tax=Paenibacillus sp. ora... 135 1e-30 UniRef50_A9KQP4 Two component transcriptional regulator, AraC fa... 135 1e-30 UniRef50_C0ERJ9 Putative uncharacterized protein n=1 Tax=Eubacte... 135 1e-30 UniRef50_C9RT55 Two component transcriptional regulator, AraC fa... 135 1e-30 UniRef50_C6CWF4 Two component transcriptional regulator, AraC fa... 135 1e-30 UniRef50_B8I1I4 Transcriptional regulator, AraC family n=2 Tax=C... 135 1e-30 UniRef50_C6J2H9 Response regulator n=1 Tax=Paenibacillus sp. ora... 135 1e-30 UniRef50_C6IY72 Response regulator n=1 Tax=Paenibacillus sp. ora... 135 1e-30 UniRef50_Q1ZVW8 Putative transcriptional regulator, AraC/XylS fa... 135 1e-30 UniRef50_A8SQN1 Putative uncharacterized protein n=2 Tax=Clostri... 135 1e-30 UniRef50_D1PME6 Transcriptional regulator, AraC family n=1 Tax=S... 135 2e-30 UniRef50_B5FRI8 AraC family regulatory protein n=32 Tax=Enteroba... 135 2e-30 UniRef50_O31522 HTH-type transcriptional regulator yesS n=2 Tax=... 135 2e-30 UniRef50_C6D174 Transcriptional regulator, AraC family n=1 Tax=P... 135 2e-30 UniRef50_C6D143 Two component transcriptional regulator, AraC fa... 135 2e-30 UniRef50_A9KRL7 Transcriptional regulator, AraC family n=1 Tax=C... 135 2e-30 UniRef50_UPI0001788EF7 two component transcriptional regulator, ... 135 2e-30 UniRef50_Q47XU2 Transcriptional regulator, AraC family n=1 Tax=C... 135 2e-30 UniRef50_A8SAS3 Putative uncharacterized protein n=1 Tax=Faecali... 135 2e-30 UniRef50_A4XMG0 Two component transcriptional regulator, AraC fa... 135 2e-30 UniRef50_C6CXU8 Two component transcriptional regulator, AraC fa... 135 2e-30 UniRef50_UPI000178A190 two component transcriptional regulator, ... 135 2e-30 UniRef50_C6CUY4 Two component transcriptional regulator, AraC fa... 134 2e-30 UniRef50_C6CT66 Two component transcriptional regulator, AraC fa... 134 2e-30 UniRef50_Q2SDE2 AraC-type DNA-binding domain-containing protein ... 134 2e-30 UniRef50_B0K339 Response regulator receiver protein n=9 Tax=Ther... 134 2e-30 UniRef50_UPI0001C362BB response regulator receiver protein n=1 T... 134 2e-30 UniRef50_C6D7X2 Two component transcriptional regulator, AraC fa... 134 2e-30 UniRef50_Q5WCV1 AraC/XylS family transcriptional regulator n=1 T... 134 2e-30 UniRef50_P32326 Urease operon transcriptional activator n=12 Tax... 134 2e-30 UniRef50_C9BAM1 Helix-turn-helix domain-containing protein n=12 ... 134 3e-30 UniRef50_UPI0001C3613B two component transcriptional regulator, ... 134 3e-30 UniRef50_B2HZ04 AraC-type DNA-binding domain-containing protein ... 134 3e-30 UniRef50_C6D8S9 Two component transcriptional regulator, AraC fa... 134 3e-30 UniRef50_C0VNX7 AraC family transcriptional regulator n=1 Tax=Ac... 134 3e-30 UniRef50_UPI0001788C94 transcriptional regulator, AraC family n=... 134 3e-30 UniRef50_A1HMP5 Two component transcriptional regulator, AraC fa... 133 4e-30 UniRef50_C7G788 Transcriptional regulator, AraC family n=2 Tax=B... 133 4e-30 UniRef50_UPI0001788EC5 two component transcriptional regulator, ... 133 5e-30 UniRef50_C6CXP8 Transcriptional regulator, AraC family n=1 Tax=P... 133 5e-30 UniRef50_C4G5N9 Putative uncharacterized protein n=1 Tax=Abiotro... 133 6e-30 Sequences not found previously or not previously below threshold: UniRef50_C6IWY8 Helix-turn-helix domain-containing protein n=1 T... 145 1e-33 UniRef50_C9KMM0 Putative AraC-type DNA-binding domain-containing... 145 1e-33 UniRef50_UPI0001C353D2 AraC family transcriptional regulator n=1... 144 2e-33 UniRef50_A8RR78 Putative uncharacterized protein n=1 Tax=Clostri... 143 4e-33 UniRef50_C6LA91 Putative transcriptional regulator n=1 Tax=Bryan... 142 8e-33 UniRef50_B5CXD1 Putative uncharacterized protein n=1 Tax=Bactero... 142 9e-33 UniRef50_B0PG61 Putative uncharacterized protein n=1 Tax=Anaerot... 142 1e-32 UniRef50_UPI0001788C0B transcriptional regulator, AraC family n=... 142 1e-32 UniRef50_A9WH32 Sensor protein n=2 Tax=Chloroflexus RepID=A9WH32... 141 2e-32 UniRef50_C6D8V3 Transcriptional regulator, AraC family n=1 Tax=P... 140 6e-32 UniRef50_C5EQL5 Transcriptional regulator n=1 Tax=Clostridiales ... 139 7e-32 UniRef50_Q9S309 Putative AraC-type Regulator n=1 Tax=Ruminococcu... 139 7e-32 UniRef50_C4ZF62 Two-component sensor response regulator n=1 Tax=... 139 9e-32 UniRef50_A8SGH8 Putative uncharacterized protein n=2 Tax=Bacteri... 139 1e-31 UniRef50_A4WEG5 Transcriptional regulator, AraC family n=5 Tax=E... 139 1e-31 UniRef50_B8FQG3 Transcriptional regulator, AraC family n=2 Tax=D... 138 2e-31 UniRef50_Q5WIZ4 Putative uncharacterized protein n=1 Tax=Bacillu... 137 2e-31 UniRef50_Q1QUA4 Transcriptional regulator, AraC family n=1 Tax=C... 137 3e-31 UniRef50_C6CWE3 Transcriptional regulator, AraC family n=1 Tax=P... 137 4e-31 UniRef50_C1PBK0 Transcriptional regulator, AraC family n=1 Tax=B... 137 4e-31 UniRef50_D1PIK0 Putative pectin acetylesterase n=1 Tax=Subdoligr... 136 4e-31 UniRef50_A3I6W7 YbbB n=2 Tax=Bacillaceae RepID=A3I6W7_9BACI 136 5e-31 UniRef50_UPI0001969E72 hypothetical protein BACCELL_04741 n=1 Ta... 136 6e-31 UniRef50_P77396 Uncharacterized HTH-type transcriptional regulat... 136 6e-31 UniRef50_C6VNM4 Transcription regulator n=3 Tax=Lactobacillus pl... 136 7e-31 UniRef50_C6D3K3 Transcriptional regulator, AraC family n=1 Tax=P... 135 9e-31 UniRef50_C0EDI6 Putative uncharacterized protein n=2 Tax=Clostri... 135 1e-30 UniRef50_C4ZGK8 Two-component response regulator n=1 Tax=Eubacte... 135 1e-30 UniRef50_B0P6G3 Putative uncharacterized protein n=1 Tax=Anaerot... 135 1e-30 UniRef50_C6JD25 Response regulator receiver protein n=1 Tax=Rumi... 135 1e-30 UniRef50_Q2BQ54 Transcriptional regulator, AraC family protein n... 135 2e-30 UniRef50_A6BIB0 Putative uncharacterized protein n=1 Tax=Dorea l... 134 2e-30 UniRef50_A0AET6 Complete genome n=16 Tax=Listeria RepID=A0AET6_L... 134 3e-30 UniRef50_C5EG90 Putative uncharacterized protein n=1 Tax=Clostri... 134 3e-30 UniRef50_B4AP12 Periplasmic binding protein n=1 Tax=Bacillus pum... 134 3e-30 UniRef50_Q03FA9 Transcriptional regulator, AraC family n=1 Tax=P... 133 4e-30 UniRef50_C7GHF4 Transcriptional regulator, AraC family n=1 Tax=R... 133 4e-30 UniRef50_UPI00017894C2 transcriptional regulator, AraC family n=... 133 4e-30 UniRef50_Q5WK82 AraC/XylS family transcriptional regulator n=1 T... 133 4e-30 UniRef50_A5ZHU6 Putative uncharacterized protein n=1 Tax=Bactero... 133 4e-30 UniRef50_C6D0B3 Transcriptional regulator, AraC family n=1 Tax=P... 133 5e-30 UniRef50_B0NUZ5 Putative uncharacterized protein n=1 Tax=Bactero... 133 5e-30 UniRef50_Q4ZTP2 Helix-turn-helix, AraC type n=23 Tax=Bacteria Re... 133 6e-30 UniRef50_C3R936 Transcriptional regulator n=2 Tax=Bacteroidales ... 133 6e-30 >UniRef50_P63202 HTH-type transcriptional regulator gadW n=57 Tax=Enterobacteriaceae RepID=GADW_ECO57 Length = 242 Score = 234 bits (596), Expect = 3e-60, Method: Composition-based stats. Identities = 242/242 (100%), Positives = 242/242 (100%) Query: 1 MTHVCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCH 60 MTHVCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCH Sbjct: 1 MTHVCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCH 60 Query: 61 YLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMF 120 YLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMF Sbjct: 61 YLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMF 120 Query: 121 SHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCF 180 SHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCF Sbjct: 121 SHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCF 180 Query: 181 SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGT 240 SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGT Sbjct: 181 SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGT 240 Query: 241 FS 242 FS Sbjct: 241 FS 242 >UniRef50_B7LQH4 GadW HTH-type(AraC-type) transcriptional positive regulator of gadA and gadBC, in absence of gadX; repressor of gadX n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LQH4_ESCF3 Length = 245 Score = 209 bits (532), Expect = 7e-53, Method: Composition-based stats. Identities = 149/241 (61%), Positives = 189/241 (78%) Query: 1 MTHVCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCH 60 M HVCSV+L+ RS DIY+E++ +++ +S++L+++ LA R L+IDE V + Sbjct: 1 MAHVCSVVLVCRSLDIYYEKKHLNIIKDSLILMDEKLAFRIPHNCSWVRSLEIDECIVSN 60 Query: 61 YLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMF 120 YLQ+IR + G H++ RLLIN PP+PLV AIFDSF+ + +P LSNMLY SCLS+F Sbjct: 61 YLQHIRHPAQYSGKHTRHRLLINHQPPLPLVRAIFDSFDAAETLTPTLSNMLYFSCLSLF 120 Query: 121 SHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCF 180 S EL+PLLFNSI+T+SGKVER+IS D ++RWYLRD+AE++YTSESLIKKKLQDENT F Sbjct: 121 SMHDELVPLLFNSINTLSGKVERIISVDTSRRWYLRDVAEKLYTSESLIKKKLQDENTSF 180 Query: 181 SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGT 240 SKILLASRM+ A+ LLEL Q+PL IAEKCGYSSTSYFINTFRQYYGVTPHQ++ S + Sbjct: 181 SKILLASRMARAKTLLELNQMPLTVIAEKCGYSSTSYFINTFRQYYGVTPHQYSHRSAVS 240 Query: 241 F 241 F Sbjct: 241 F 241 >UniRef50_C6UHW7 Putative AraC-type regulatory protein encoded in prophage n=2 Tax=Escherichia coli RepID=C6UHW7_ECOBR Length = 237 Score = 190 bits (484), Expect = 3e-47, Method: Composition-based stats. Identities = 78/238 (32%), Positives = 132/238 (55%), Gaps = 1/238 (0%) Query: 1 MTHVCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCH 60 M ++CS+IL+ SF + ++ I + +L+E NL D F+ + +D++E TV Sbjct: 1 MPYICSIILVLNSFGVRIGKEDILFKKGNAVLIEYNLKDLFSSNTDHLMIVDVEEKTVND 60 Query: 61 YLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMF 120 + +N P ++ L++ + L+ + N ++ N + L+CL++ Sbjct: 61 FFKNYTLSPFSVRRFYPSYLIV-ECEDFSLLKNLVACLNCDSKTVDVVRNQISLACLAVL 119 Query: 121 SHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCF 180 S +K + LF S++++ KV+ +I DI+ W L DI+ R+Y SESL+K+KL+DE F Sbjct: 120 SSEKIVQSFLFGSLNSLGCKVKAIIHSDISASWRLCDISSRLYMSESLLKRKLKDEGLSF 179 Query: 181 SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSP 238 SK++L RM MA+RLL + +A CGY + SYF++ FR Y+GV PHQ+ Sbjct: 180 SKLILEERMMMAQRLLIYSNHTVGKVAGICGYDNASYFVSVFRGYFGVPPHQYLSRFS 237 >UniRef50_B7M6J8 Putative AraC-type regulatory protein encoded in prophage CP-933H ( transcription regulator) n=16 Tax=Escherichia RepID=B7M6J8_ECO8A Length = 250 Score = 189 bits (480), Expect = 9e-47, Method: Composition-based stats. Identities = 81/240 (33%), Positives = 122/240 (50%), Gaps = 1/240 (0%) Query: 1 MTHVCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCH 60 M CSVILI SFD+Y ++ + L S +L++ + D F D + Sbjct: 4 MATTCSVILILESFDVYFGKESVFLERGSSVLVDSSSRDFFLTYPERVIVADFGAEFISR 63 Query: 61 YLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMF 120 YL+ + L IN L+ + N I + +CLS F Sbjct: 64 YLKANNLRDISDCREYPSYLKIN-FADFSLIKGLISWANHCAEYIEIFDESIAFTCLSAF 122 Query: 121 SHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCF 180 S +K+ LF + + KV+ +I D++ W L+DI+ R+Y SESL+K+KL++E F Sbjct: 123 SSEKQFGVFLFECLKSTEAKVKTIIHTDLSAPWRLKDISSRLYLSESLLKRKLKEEGVSF 182 Query: 181 SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGT 240 SKI+L RM MA LL R P+ +A+ CGY+S SYF FR+Y+GV+P Q++Q S + Sbjct: 183 SKIILDERMQMAEYLLSTRCYPISKVAKVCGYASVSYFTYVFRRYFGVSPSQYSQRSSES 242 >UniRef50_P05052 HTH-type transcriptional regulator appY n=6 Tax=Escherichia coli RepID=APPY_ECOLI Length = 249 Score = 186 bits (472), Expect = 6e-46, Method: Composition-based stats. Identities = 82/233 (35%), Positives = 139/233 (59%) Query: 1 MTHVCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCH 60 M +VCSV+ I +SFD+ ++ IS S+ ++ + + C R +DID+ T Sbjct: 1 MDYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLS 60 Query: 61 YLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMF 120 + ++ K+ + + PP+ LV ++F+ + +S L L +S L+MF Sbjct: 61 FFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMF 120 Query: 121 SHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCF 180 ++ + + +I+T + K+ +ISF+I ++W+L+DIAE +YTSESLIKK+L+DE T F Sbjct: 121 KKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSF 180 Query: 181 SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 ++IL +RM A++L+ ++ +A+KCGY+STSYFI F+ YYGVTP + Sbjct: 181 TEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 >UniRef50_Q83RF4 HTH-type transcriptional regulator ydeO n=59 Tax=Enterobacteriaceae RepID=YDEO_SHIFL Length = 253 Score = 185 bits (471), Expect = 8e-46, Method: Composition-based stats. Identities = 81/244 (33%), Positives = 132/244 (54%), Gaps = 8/244 (3%) Query: 1 MTHVCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCH 60 M+ VCSVI I +F+ + + + IL+++ + F + + +E T+ Sbjct: 1 MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFNENTIKK 60 Query: 61 YLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMF 120 YLQ + + + + L + P L+ + N N S +L SCLS+F Sbjct: 61 YLQCTN--IQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIF 118 Query: 121 SHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCF 180 + K I LL N + +VSGKV +++ +A W L+DI + +Y SESL+KKKL+ E T F Sbjct: 119 AACKGFITLLTNGVLSVSGKVRNIVNMKLAHPWKLKDICDCLYISESLLKKKLKQEQTTF 178 Query: 181 SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTP----HQFA-Q 235 S+ILL +RM A+ L+ + + ++ IAE+CGY+STSYFI FR+++G +P ++ Q Sbjct: 179 SQILLDARMQHAKNLIRV-EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQ 237 Query: 236 HSPG 239 G Sbjct: 238 RHTG 241 >UniRef50_C6UPG2 Putative envelope protein encoded within prophage CP-933N n=34 Tax=Escherichia coli RepID=C6UPG2_ECO5T Length = 237 Score = 172 bits (437), Expect = 7e-42, Method: Composition-based stats. Identities = 80/237 (33%), Positives = 123/237 (51%), Gaps = 4/237 (1%) Query: 1 MTHVCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCH 60 M VCSVI++ +I+ E+ +SL S++L K + F + DI+ V Sbjct: 1 MVVVCSVIMVCSPINIFLEKDTLSLKPGSVVLATKCIRALFLMHYGKVKIFDINHSIVSQ 60 Query: 61 YLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMF 120 YL+ +L R L + + P L A+ S SG + + L ++CLS+F Sbjct: 61 YLEIQHKLTRTHLTDVPLYLSLEPNNP-ALAEALITSQRFSGDTTDMF---LMMACLSLF 116 Query: 121 SHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCF 180 + ++ L +S++S KV +I DI+ W L IA R++ SESL+K KL++E F Sbjct: 117 ESDERILLFLSGCLSSISAKVRAIIQTDISASWTLGAIALRLHMSESLLKIKLKNEGHMF 176 Query: 181 SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 S++LL RM +A +L R +AEKCGYSS SYFI+ F +YYG P ++ Sbjct: 177 SRLLLEERMRVAVNMLCSRHGYGQAVAEKCGYSSWSYFISVFHRYYGFPPDRYVSRQ 233 >UniRef50_A7ZH67 HTH-type transcriptional regulator YdeO n=2 Tax=Escherichia coli RepID=A7ZH67_ECO24 Length = 240 Score = 169 bits (428), Expect = 8e-41, Method: Composition-based stats. Identities = 84/236 (35%), Positives = 129/236 (54%), Gaps = 2/236 (0%) Query: 1 MTHVCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCH 60 M VC ILI++ + + + L+ +LLL+ + D S ++++E TV + Sbjct: 7 MPGVCYFILIKKPINFQFLKDFLILNYGDVLLLKHSERDFLQSYSDKYLEIELNEDTVRN 66 Query: 61 YLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMF 120 YL + + +L L+ ++ D+ N P + ++ S LS+F Sbjct: 67 YLSYYNHCEKQFL-ETPPCILRKSFAYPDLLISMIDNINSQNHIHPDFKDAIFFSLLSVF 125 Query: 121 SHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCF 180 S L L + + T SGKV + D++K W LRD+A+ +Y SESLIKKKL ENT F Sbjct: 126 SDVANLRAFLTSGMPTFSGKVRSIFLSDVSKHWKLRDLADYLYMSESLIKKKLLLENTSF 185 Query: 181 SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 SKILL +RMS+A +LL+ P+ ++E CG+SSTSYF+ FRQYY TP ++ +H Sbjct: 186 SKILLDTRMSLAIKLLKQ-NHPIKYVSEMCGFSSTSYFVCLFRQYYECTPRKYLKH 240 >UniRef50_Q93SE2 Putative uncharacterized protein n=1 Tax=Escherichia coli RepID=Q93SE2_ECOLX Length = 245 Score = 162 bits (410), Expect = 1e-38, Method: Composition-based stats. Identities = 75/236 (31%), Positives = 127/236 (53%), Gaps = 2/236 (0%) Query: 4 VCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQ 63 VC VIL+ R F+ +K+ +LL + F + L IDE V Y++ Sbjct: 3 VCYVILVNRPFETEIAGKKLFFQKNDVLLTDNISQSFFLRHPGNVTELRIDECIVRKYME 62 Query: 64 NIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHK 123 + ++ + S + + L+ + + + S ++ +CLS+FS Sbjct: 63 SADRIQHSDSAVSVP-FIKTTFSHIALLHNVMQNLSLQKTLPQQFSEQMFFACLSIFSTH 121 Query: 124 KELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKI 183 + + LLF I++V+ KV +I ++ W ++DI+ +Y SESL+K+KLQ+E FS+I Sbjct: 122 RGFMFLLFRCINSVALKVRYIICSSPSRAWRVKDISNSLYMSESLLKRKLQEEKVSFSQI 181 Query: 184 LLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPG 239 LL RM AR+L+ ++ ++ IA +CGY+ST YFI+ FR+Y+G+TPHQ + G Sbjct: 182 LLDIRMHNARQLI-SSKLSVNQIAIRCGYASTPYFISVFREYFGITPHQMMINQSG 236 >UniRef50_C6LLK3 Putative two-component response regulator n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LLK3_9FIRM Length = 531 Score = 155 bits (391), Expect = 1e-36, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 60/143 (41%), Gaps = 1/143 (0%) Query: 98 FNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRD 157 + ++ + ++ M + + ++ K + + ++ L D Sbjct: 389 YLDTVMALEDYEDIRTWFLEKMMQTCCSIRDKNEDRSESLVEKARSYMQENYSREISLDD 448 Query: 158 IAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTS 216 +++ + S K ++E F++ L R+ A+ LLE ++ + I GY+ + Sbjct: 449 VSKEVNVSPYYFSKIFKEESGENFTEYLTNIRIGKAKELLENPELSIKEIGVMSGYTDPN 508 Query: 217 YFINTFRQYYGVTPHQFAQHSPG 239 YF F+++ G+TP ++ + G Sbjct: 509 YFSRIFKKHTGITPREYRERYYG 531 >UniRef50_C4Z204 AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR n=2 Tax=Clostridiales RepID=C4Z204_EUBE2 Length = 277 Score = 155 bits (391), Expect = 2e-36, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 78/235 (33%), Gaps = 11/235 (4%) Query: 12 RSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRN 71 + + ++++ + I + I+ Sbjct: 41 GECTSFIDHNIYKFGKGDLVIVPSGCLHRT-TYNGKGMHERIVISFRNEATEWIQNQTGK 99 Query: 72 LGLHS------KDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKE 125 + + + + + L+ + + SP + + L K Sbjct: 100 ELMENCMKPGVVNIPEKRRDYVVALLDKLIFENDSPDELSPAFIKVGLIELLLFIIRCKN 159 Query: 126 LIPLLFNS---ISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQ-DENTCFS 181 + + + +V I A L +A++ S S + KK + F Sbjct: 160 YEENVIKEIDVDNRIIQEVATYIYEHYADNLSLEYVADKFNLSRSYLSKKFKTATGFGFK 219 Query: 182 KILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 + ++ R+ A LL + IA +CG++ ++YF + FR+ G++PH++ ++ Sbjct: 220 EYIINVRIQNACNLLLETNKSITDIAFECGFNDSNYFGDAFRKAKGISPHKYRKN 274 >UniRef50_C9KMM6 Putative AraC-type DNA-binding domain-containing protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KMM6_9FIRM Length = 241 Score = 153 bits (388), Expect = 4e-36, Method: Composition-based stats. Identities = 40/238 (16%), Positives = 94/238 (39%), Gaps = 7/238 (2%) Query: 2 THVCSVILIRRSFDIY-HEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCH 60 H+C ++L+ + IY + ++ + ++++ D S + Sbjct: 5 DHLCELLLVSQGAGIYMIDGRRYTAQKGNLIIYNSRTVHDEFGGSGSNLVTYCIAIGGLR 64 Query: 61 YLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMF 120 I LP + L + V ++FD+ + + ++N L ++ ++ Sbjct: 65 ----IDGLPADHLLPDGYCPVQPLRQHFAEVQSLFDAIEKEAKSHAEIANYLTMALITKL 120 Query: 121 SHK-KELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NT 178 + +E T++ + I + + L DIA +T+ + + E Sbjct: 121 AAFLREEGLQEEQQTPTLAARARAFIDKNYKEAIRLGDIATATHTNAYYLSHLFKAEIGL 180 Query: 179 CFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 K ++ R+ A+ LL + + IA + GY++++YF N F+ +TP ++ + Sbjct: 181 SPMKYVILRRIGEAQNLLINTDMTITQIAAQVGYNNSNYFQNVFKGALDMTPGEYRRK 238 >UniRef50_Q5WL10 AraC/XylS family transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WL10_BACSK Length = 298 Score = 153 bits (388), Expect = 4e-36, Method: Composition-based stats. Identities = 33/247 (13%), Positives = 81/247 (32%), Gaps = 13/247 (5%) Query: 5 CSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELT------- 57 C +L S + ++ L I+ L+ S R +++ Sbjct: 40 CMHVL-SGSCKVETDEGSYQLKKGQIIFLDAGTRHRLIV-SERCRMFNVEFSFEQGCTAF 97 Query: 58 --VCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLS 115 + R L + + LL + + + ++ + + +L Sbjct: 98 PPFFKLCKENRALGNMVNKQASQLLLHDTDDTYQCLRRLILEVDKKSEQTDFMVQLLLSE 157 Query: 116 CLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD 175 L + E + + I + + + DIA ++ +++ + Sbjct: 158 YLIRIAELAE-AKVAEPDQQAYVKRALAYIHQNYDREVSVADIANSVHLHPGYLQRVFKA 216 Query: 176 -ENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFA 234 + L++ R++ A+ +L+ I + I G +S YF TF+++ TP ++ Sbjct: 217 FTGKSIHEFLISYRINKAKAMLKQTDISITDIPHYIGMNSQQYFSTTFKKHVKCTPSEYR 276 Query: 235 QHSPGTF 241 + Sbjct: 277 KRHQYND 283 >UniRef50_B7LQH5 HTH-type transcriptional regulator gadX for glutamic acid decarboylase and transporter (GadA, gad BC) (AraC/XylS family) (Modular protein) n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LQH5_ESCF3 Length = 289 Score = 153 bits (387), Expect = 5e-36, Method: Composition-based stats. Identities = 58/242 (23%), Positives = 111/242 (45%), Gaps = 13/242 (5%) Query: 4 VCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLD-IDELTVCHYL 62 +CS+ + +++ KI++ +++ ++ + + I + T+ + Sbjct: 26 ICSI---NETILTFNDGNKITIAPGNLIFVDP--RQLTITHYGELENVALITQKTISLLV 80 Query: 63 QNIRQLPRNLGLHSKDRLLI-NQSPPMPLVTAIFDSFNESGVN--SPILSNMLYLSCLSM 119 + + + I + P + + + ++S ++ + L L+ +S+ Sbjct: 81 SALNSDSLIHSYKAHNSPFIIRKCPDIAIFKYAANLSHKSDLSCAEKLRKRSLMLALMSL 140 Query: 120 FSHKKELIPLLFN-SISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENT 178 F + IPLL ++ +V +I+ +IA W L IA + S SL+KKKLQ E T Sbjct: 141 FLDDQNFIPLLMRILHPDITTRVCAVINSNIANDWSLTLIASELLMSPSLLKKKLQAEQT 200 Query: 179 CFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF---AQ 235 +S++L RM A +LL + A CGY S SYFI FR+++G+TP ++ Q Sbjct: 201 TYSQLLTECRMQQALKLLRCDDYAVKKTAILCGYKSVSYFIAVFRKHFGITPTEYQDKRQ 260 Query: 236 HS 237 H Sbjct: 261 HH 262 >UniRef50_A7VRD3 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VRD3_9CLOT Length = 277 Score = 152 bits (385), Expect = 7e-36, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 87/235 (37%), Gaps = 9/235 (3%) Query: 5 CSVILIRRSFDIYH-EQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQ 63 C ++ + E +K L ++++ + S L + L + + Sbjct: 43 CEILYVAGGAGEAILEGKKFRLAPGDLVVVNPGTLHE--ERSDAKAPLRLIFLAIRDF-- 98 Query: 64 NIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNM---LYLSCLSMF 120 + LP K R+L + + + E+ + L + L + Sbjct: 99 AVPGLPAGCLSQEKYRVLSCGEYRYKMDIYLRELLQETSSQIEFYQEISQGLVSALLVLV 158 Query: 121 SHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD-ENTC 179 + P ++S K++ + + L ++E +Y S+ + ++ Sbjct: 159 MRLIRINPEDEAALSQECQKIKEYLDQNFTSPITLDSLSETVYISKHYLSHLFKEQTGVS 218 Query: 180 FSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFA 234 K L + RM A LL ++P+ +++ GY + YF F++ YG++P ++ Sbjct: 219 PIKYLTSKRMEKACELLSETELPVSEVSKAVGYENPLYFSQVFKRIYGISPVKYR 273 >UniRef50_UPI0001745884 transcriptional regulator n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001745884 Length = 295 Score = 152 bits (385), Expect = 8e-36, Method: Composition-based stats. Identities = 44/251 (17%), Positives = 86/251 (34%), Gaps = 20/251 (7%) Query: 6 SVILIRRSFDIYHEQQKI-SLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYL-- 62 ++L+++S I +L ++L+ NL + + + V +L Sbjct: 49 ELVLVKKSQGYRIVGDNITNLSAGDLVLVGSNLPHLWHQDNTAGELEAVVVQFVADFLGR 108 Query: 63 ----QNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLS 118 ++ + R L ++ L I + + D + P+ LS L Sbjct: 109 EFAGRSDFEPVRQLMDKARRGLHITGD----VRDRVADRMSAMVGLGPLRRLAELLSILD 164 Query: 119 MFSHKKE--------LIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIK 170 +H P L +V + I + + +A S Sbjct: 165 DLAHSPGVAFLSSPGFAPQLGLGDQARVDRVMQFIHKHLCEPINRDQVAAIAALSPGAFS 224 Query: 171 KKLQ-DENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVT 229 + + F L R+ A RLL + + +A CG+ + ++F F ++ GVT Sbjct: 225 RFFRSRTGRTFPAYLNELRLGRAARLLSTTDLRVVDVAADCGFRNLAHFNRLFLKWKGVT 284 Query: 230 PHQFAQHSPGT 240 P +F + GT Sbjct: 285 PSEFRKRLGGT 295 >UniRef50_C9RVZ3 Two component transcriptional regulator, AraC family n=4 Tax=Geobacillus RepID=C9RVZ3_GEOSY Length = 513 Score = 152 bits (385), Expect = 9e-36, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 47/132 (35%), Gaps = 1/132 (0%) Query: 109 SNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESL 168 + + + + +L GK + I A+ L ++AE+ S Sbjct: 381 AELKRAALDELDRIAADLEVWRQQQAYGKLGKAKDYIDRHYAEPLTLEEVAEQAGISPYY 440 Query: 169 IKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYG 227 K ++ F + R+ A+ L L I GY+ +YF F++ G Sbjct: 441 FSKLFKEHFGITFIDYVTNVRIERAKEALAETDQSLKEICFSVGYNDPNYFSRVFKKQTG 500 Query: 228 VTPHQFAQHSPG 239 ++P ++ + Sbjct: 501 LSPSEYRKKVQA 512 >UniRef50_UPI0001C356F7 AraC family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C356F7 Length = 268 Score = 151 bits (382), Expect = 2e-35, Method: Composition-based stats. Identities = 39/241 (16%), Positives = 79/241 (32%), Gaps = 16/241 (6%) Query: 9 LIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQL 68 L I+ + I+ L+ + S + YL ++++L Sbjct: 30 LYSGHCKIFINHTLYYVEPGDIIFLKPGEIHRTTYHSSPVNE-RVTISFDGEYLDSMKEL 88 Query: 69 PRNLGLHSKDRLLINQSPPMPL--VTAIFDSFNESGVNS-------PILSNMLYLSCLSM 119 G + + + N +P + + + P++ + L Sbjct: 89 ---CGEENVEYIFRNSKVTVPNGNRSRVEELIRRIEYEETGQDGFSPLMKKGCFYELLVS 145 Query: 120 FSHKKELIPL--LFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD-E 176 S +E + I L ++AE + S + +K + Sbjct: 146 LSRCQEAETDHGRLEIGEETIEAAAKYIYDHYQNPITLEEVAELSHMSPAYFSRKFKAVT 205 Query: 177 NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 + + L R+ A RLL + IA++CG+ +YF + FR+ GV+P F + Sbjct: 206 GFGYKEYLTNIRIREASRLLLHSACSVTEIADRCGFGDGNYFGDAFRKAKGVSPRAFRKM 265 Query: 237 S 237 Sbjct: 266 Q 266 >UniRef50_B0MKI2 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MKI2_9FIRM Length = 284 Score = 151 bits (382), Expect = 2e-35, Method: Composition-based stats. Identities = 44/243 (18%), Positives = 77/243 (31%), Gaps = 10/243 (4%) Query: 5 CSVILIRRS-FDIYHEQQKISLHNESILLLEKNLADD---FAFCSPDTRRLDIDELTVCH 60 C +I +R F+++ + + L+ C D D+ L Sbjct: 41 CEIIYVRSGYFELFLDGHTHRIDAGCCSLIIGGSMHGGTPKDNCRYDCLVFDMAALLKSS 100 Query: 61 YLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMF 120 + + P S P A+ D+ E L L Sbjct: 101 QICTLHLQPIINHERRFITFFSADSEPAKDAKAVIDAMLEKEPGYEFTVPGRLLCMLGHI 160 Query: 121 SHKKELIPLLFNSISTVSG-----KVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD 175 ++E + S + V I + K L ++A + + + ++ Sbjct: 161 VARQEHYQSGETAASDIKKVRRFKNVISYIEQNYRKNITLEELANECGMNRNYFCRAFKE 220 Query: 176 -ENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFA 234 + L R+ A L+ L IA KCG++ SYFI F+ GVTP + Sbjct: 221 YTGKTPVEYLNYFRIESACELIASTDEKLIDIAMKCGFNDYSYFIKVFKSMKGVTPRDYC 280 Query: 235 QHS 237 + S Sbjct: 281 RRS 283 >UniRef50_UPI000178AA55 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178AA55 Length = 275 Score = 151 bits (381), Expect = 2e-35, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 84/231 (36%), Gaps = 8/231 (3%) Query: 9 LIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQL 68 ++ + +++ ++L+ ++ S H+ + Sbjct: 49 ILDGEGWVKIGDEELYPVPGQLVLMPARTRQSYSVISGRPY-----LKYWSHFSATVGDS 103 Query: 69 PRNLGLHSKDRLLINQSPPMP-LVTAIFDSFNESGVNSPILSNMLYLSCLS-MFSHKKEL 126 L+ ++ + MP L + D+ + + + + L LS +F H++ Sbjct: 104 DVFSWLNVPHCYDLSGNAEMPALFQQLVDAHRSDTLAARLREKSVMLDILSRVFEHQQPQ 163 Query: 127 IPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILL 185 I KV++ I + + L +A ++ + K + K L Sbjct: 164 IHADKMEDMGRLHKVQQYIKNHLHEEITLEQMAGTLHLHPNYFIKYFKRHFGITPQKYLS 223 Query: 186 ASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 RM A+ +L + + IA+ G+ S +YF TFR+ G +P ++ + Sbjct: 224 LKRMEQAKLMLRTTSLSIKEIADATGFESANYFSKTFRKEVGYSPSEYRNN 274 >UniRef50_Q2RGN4 Two component transcriptional regulator, AraC family n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RGN4_MOOTA Length = 548 Score = 148 bits (375), Expect = 1e-34, Method: Composition-based stats. Identities = 39/241 (16%), Positives = 86/241 (35%), Gaps = 20/241 (8%) Query: 13 SFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRNL 72 F +++ ++ +H + ++ A + + Y Q + + L Sbjct: 299 EFRLFYGGDQV-IHADDVIARPSAGQFLPAPEEQELTQAIRMGDRQAAYRQA-KNILMQL 356 Query: 73 GLHSKDRLLINQSPPMPL-----------------VTAIFDSFNESGVNSPILSNMLYLS 115 L + R I + + L V+ + + + + L++M Sbjct: 357 LLEQEKRPAILKMKLLELNTLAARAALEGGADPEAVSDLALASSTEFLTLDNLADMRERI 416 Query: 116 CLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD 175 + + ++ S++ + + I + ++ L ++A ++Y S K + Sbjct: 417 LERLMALVAQVAETREQRNSSLIDRASKYIEANFSQDLTLEEVARQVYLSPCYFSKLFKQ 476 Query: 176 E-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFA 234 F L R+ AR LL ++P+ IA + GY YF F++ G TP F Sbjct: 477 FKGLNFIDYLTKVRLKAARELLLNTKLPVAEIATRVGYRDARYFGQVFKKQEGYTPSVFR 536 Query: 235 Q 235 + Sbjct: 537 K 537 >UniRef50_C0FP55 Putative uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FP55_9FIRM Length = 279 Score = 148 bits (375), Expect = 1e-34, Method: Composition-based stats. Identities = 38/238 (15%), Positives = 90/238 (37%), Gaps = 9/238 (3%) Query: 9 LIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQL 68 L+ + L +L+ ++ F + T + + + ++ Sbjct: 40 LLSGNCSALINHSIYHLVPGDFVLIPQSAMHRFVYDCNSTVK-RYNLFFTMDFAASLFHS 98 Query: 69 -PRNLGLHSKDRLLINQSPPMP-LVTAIFDSFNESGVNSPILSN-----MLYLSCLSMFS 121 +++ H +++ + + T +FD+ + V S + L + Sbjct: 99 DTKDILEHLFHYPVLHLTSLLQGNATRLFDTLYQETVGQDSCSQAVIPAYISLILSLLVR 158 Query: 122 HKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD-ENTCF 180 ++ + +S R IS + L +A+ ++ S + KK + F Sbjct: 159 NRDHIQLQDLDSAENAIQASARYISTHFQEPVSLHMVADYVHMSPTYYSKKFKQITGVGF 218 Query: 181 SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSP 238 + L +R+ A LL + + IA +CG++ +YF + FR+ +G++P Q+ + Sbjct: 219 KEYLTKTRLYEATELLTHTSLNVTEIAIRCGFNDGNYFGDAFRKEFGLSPLQYRKRQK 276 >UniRef50_C6JEP4 Two component transcriptional regulator n=3 Tax=Clostridiales RepID=C6JEP4_9FIRM Length = 531 Score = 148 bits (375), Expect = 1e-34, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 57/142 (40%), Gaps = 1/142 (0%) Query: 96 DSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYL 155 S+ + + N+ +L ++ + + I+ + + L Sbjct: 388 RSYIRELQSCTDIENLKKWFLDKTREICTKLENSKEKEAGSIIDRAKEYINENFRRDISL 447 Query: 156 RDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSS 214 D++ + S K + E F + L R+ AR LL+ ++ + I + GYS Sbjct: 448 DDVSREVDISPYYFSKLFKQETGKNFIEYLTEIRLKNARELLQDSRLSIKEICAQSGYSD 507 Query: 215 TSYFINTFRQYYGVTPHQFAQH 236 +YF F++Y GVTP +F + Sbjct: 508 PNYFSRIFKKYEGVTPSEFRER 529 >UniRef50_C0EDX0 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EDX0_9CLOT Length = 360 Score = 147 bits (372), Expect = 3e-34, Method: Composition-based stats. Identities = 40/248 (16%), Positives = 90/248 (36%), Gaps = 22/248 (8%) Query: 14 FDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDI------------DELTVCHY 61 ++ H Q+++++ ++ +LL+ N DT +I + + ++ Sbjct: 113 VNVVHRQERVTVDSKHVLLMNPNSRHLPLCDELDTIAFNIMLRRSFIEETVLNLIGGNNF 172 Query: 62 LQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFS 121 + + +D L + + +V I E P ML + + + Sbjct: 173 VYHFFLHSIYGENEMRDYLFLPVNDE--IVGHIHSIIREHCEEKPFYEQMLVSNLILLLG 230 Query: 122 HKKELIPLLFNSIST------VSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD 175 + + S + R I A L+ +AE S++ + + ++ Sbjct: 231 EFARIQKQETDLESERLVGSGKLTDMLRYIQLHYAT-VTLQSVAEHFSYSDAYLSRLIKK 289 Query: 176 E-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFA 234 E FS+I+ R A L+ + + I++ GY + F F++ GV+P + Sbjct: 290 ETGKSFSEIVSGIRFHTACNYLKHSTLTIEKISDIVGYQNVGNFFRAFKKNCGVSPSDYR 349 Query: 235 QHSPGTFS 242 + + S Sbjct: 350 KQNQAGAS 357 >UniRef50_C6LL87 Transcriptional regulator, AraC family n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LL87_9FIRM Length = 287 Score = 147 bits (371), Expect = 3e-34, Method: Composition-based stats. Identities = 40/246 (16%), Positives = 90/246 (36%), Gaps = 11/246 (4%) Query: 7 VILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHY--LQN 64 ++ + ++ +++ L I+++ + + R + + L L Sbjct: 42 IMPTESGYSVHCGEKEYVLDEGDIIIICPGVIHELFSPPKGVRIIFLVSLAQIDLQELDL 101 Query: 65 IRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHK- 123 + + L S ++ + L+ I D + + + +L L + Sbjct: 102 VISMISPAILISPEKFPQIHAQIHRLMLEIRDEYFRNLPYTESSIYAKFLEILVLVGRCY 161 Query: 124 ----KELIPLLFNSISTVSGK---VERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE 176 + N K + I+ A+ L ++A S+ + + Sbjct: 162 AEIAQHNFEAKNNKQQEYMEKFLFICNYINEHYAEPLSLEEVASLAGFSKYHFTRLFKQY 221 Query: 177 -NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 +T F K L R++ A+ LL + + + I+ +CG+S+ S F+ FR+ G TP + + Sbjct: 222 ADTTFYKYLNQKRIAHAKHLLVDKNLSVLDISLQCGFSNLSSFLRMFRKLTGFTPTELRK 281 Query: 236 HSPGTF 241 G F Sbjct: 282 MYDGDF 287 >UniRef50_A8SQD4 Putative uncharacterized protein n=2 Tax=Coprococcus RepID=A8SQD4_9FIRM Length = 300 Score = 146 bits (369), Expect = 5e-34, Method: Composition-based stats. Identities = 40/243 (16%), Positives = 88/243 (36%), Gaps = 15/243 (6%) Query: 6 SVILIRR-SFDIYHEQQKISLHNESILLLEKNLAD-----------DFAFCSPDTRRLDI 53 +I +R+ + + QK + + S+ + + + Sbjct: 41 EIIYVRKGPLTVEIDGQKFTGEDGSVFIASPGVLHMMSAPDTPVDYFTFIFPLEFISFQT 100 Query: 54 DELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLY 113 + +R R DR L+ +P++ + + + G + I + Sbjct: 101 KDALEDEVFFPLRNHTRGFRPEVADRKLL--GKLIPILDELVEENGKMGTHRQIQVRIRL 158 Query: 114 LSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKL 173 L + + +L L N+ + ++ I + L +++E + SE + + Sbjct: 159 LQMMDLLVEYSQLEELTRNASGELEKEILLYIQDNYHDNIGLAELSEHFHLSEKYMSRLF 218 Query: 174 QDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQ 232 + + ++ + R+ AR LLE + + IA K GY + SYFI F G +P + Sbjct: 219 SERFHMTLTQYVNYVRLRYARHLLESTDLSVTEIAMKSGYQNVSYFIRRFSSAMGESPLR 278 Query: 233 FAQ 235 + Sbjct: 279 YRN 281 >UniRef50_C5D8H7 Two component transcriptional regulator, AraC family n=3 Tax=Geobacillus RepID=C5D8H7_GEOSW Length = 515 Score = 146 bits (369), Expect = 5e-34, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 48/130 (36%), Gaps = 1/130 (0%) Query: 108 LSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSES 167 L + + + + + GK + I L ++AE + S Sbjct: 381 LEELKRTATEQLQHMVHYIQAWRHQQANGKIGKAKDYIDEHYHHPLTLEEVAEYVGISPY 440 Query: 168 LIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYY 226 K +D F + R++ A++ + L I GY+ +YF F+++ Sbjct: 441 YFSKLFKDRFGMTFIDYVTEVRIARAKKEMADPNKSLKEICFLVGYNDPNYFSRVFKKHT 500 Query: 227 GVTPHQFAQH 236 G++P ++ + Sbjct: 501 GMSPTEYRKK 510 >UniRef50_A4XWL1 Transcriptional regulator, AraC family n=5 Tax=Bacteria RepID=A4XWL1_PSEMY Length = 364 Score = 146 bits (369), Expect = 6e-34, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 65/139 (46%), Gaps = 2/139 (1%) Query: 98 FNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRD 157 F+ + P+L + + H + + ++ ++ RL+ D L Sbjct: 226 FHARYLAMPLLQDER--TLKQFLEHSPADLLARPDGGDSLISQIRRLLGRDCRTWPDLEQ 283 Query: 158 IAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSY 217 +A++++TS +++ L++E T F ++ R +A L ++ +H IAE+ G+S S Sbjct: 284 VAQQLHTSPQTLRRHLREEGTSFQELKDHLRRDLAIYHLGRDELAIHDIAEQLGFSEPSA 343 Query: 218 FINTFRQYYGVTPHQFAQH 236 F F+++ G+TP + Sbjct: 344 FHRAFKKWTGLTPGAYRAQ 362 >UniRef50_B7GJK9 DNA-binding response regulator (Contains REC and AraC-type DNA-binding domain) n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GJK9_ANOFW Length = 428 Score = 146 bits (368), Expect = 7e-34, Method: Composition-based stats. Identities = 30/204 (14%), Positives = 78/204 (38%), Gaps = 1/204 (0%) Query: 33 LEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVT 92 +++ + + + I+ H + ++ L + L + R+ I V Sbjct: 219 IKQQRRCLCSLLNQRQMAIFIEAKQDEHVISFVQSLLKQLEKVLQQRVKIGIGTIQSGVD 278 Query: 93 AIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKR 152 + S+ E+ + +S+ + + E+ + +V +VE + + Sbjct: 279 GMKRSYKEASIAVRYVSSFSRVMHVDDVPLTDEVEQTTIKTGGSVIEQVEMFLQENYCYD 338 Query: 153 WYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCG 211 L ++A+ ++ + K + E F + R+ A++L+ + + + G Sbjct: 339 VTLEEVAKYVHLTPYYFSKLFKKETGQTFIDYVTHLRIEKAKQLMRDEGLTVKEACYRVG 398 Query: 212 YSSTSYFINTFRQYYGVTPHQFAQ 235 Y +YF F++ +TP ++ Q Sbjct: 399 YKDPNYFSRVFKKVTNMTPTEYRQ 422 >UniRef50_A1HM14 Two component transcriptional regulator, AraC family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HM14_9FIRM Length = 247 Score = 146 bits (368), Expect = 8e-34, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 64/172 (37%), Gaps = 4/172 (2%) Query: 73 GLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFN 132 +D +LI + + P+ + + ++ Sbjct: 73 RQPRQDVILITVHDDFQFIQNAIRQGVCDYLLKPVELPAMKECLENWLQRRRREAAAAAG 132 Query: 133 SIS---TVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASR 188 + +V R ++ L D A R++ + S + + + E CF + + Sbjct: 133 PEEQALSPIQQVLRYMAETPLGDINLTDAARRVHMNPSYLSQLFKQEMQVCFVDYVTDLK 192 Query: 189 MSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGT 240 M A+RLL + + IA++ GY+ +YF N F+++ +P ++ + T Sbjct: 193 MKEAKRLLATTTLRISEIADRLGYADLAYFSNIFKKHTACSPSEYRKQQART 244 >UniRef50_UPI0001C3766F two-component response regulator n=2 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C3766F Length = 286 Score = 146 bits (368), Expect = 8e-34, Method: Composition-based stats. Identities = 36/243 (14%), Positives = 87/243 (35%), Gaps = 12/243 (4%) Query: 7 VILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIR 66 +I + F + + L + I+++ D + + ++ Sbjct: 42 IIPLHNGFTVVSGGVEYHLSEKEIIVIPPGELHSMPAQDGRRIIFQCDNSVISE-VPSLE 100 Query: 67 QLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKEL 126 + +N+ + I D + E +P+ +Y+ +++ + +E Sbjct: 101 SILPVFSSAVHITPSLNKELYVLARKNILDIYTEYYSKAPMADVRIYMYLITILTAIREF 160 Query: 127 IPLLFNSISTVSGK----------VERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE 176 + S + + V + I+ + L +A S+ + + Sbjct: 161 QLNSADENSASAAENSDESRKFGLVTKYINQNYMYELPLEKLASIAGYSKYHFSRIFKKY 220 Query: 177 N-TCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 N + + + + R+ A RL+ +P+ +A +CG+SS + F FR+ G TP +F + Sbjct: 221 NNMSYIQYINSKRIKAAERLMADSSLPITEVAMQCGFSSLTTFNRAFRKAKGCTPTEFRK 280 Query: 236 HSP 238 Sbjct: 281 LFK 283 >UniRef50_C0CVY3 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CVY3_9CLOT Length = 529 Score = 146 bits (368), Expect = 9e-34, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 54/127 (42%), Gaps = 1/127 (0%) Query: 109 SNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESL 168 ++ + + + + + + I + K L ++A + S Sbjct: 396 EETARQKFVAAMVELAQAVVIKNQEPDGIITRAQDYIRQNFRKDISLEEVARTVGISPYY 455 Query: 169 IKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYG 227 K ++E F++ L R+ A+RLL R++ + + GY++ +YF F+++ G Sbjct: 456 FSKLFKEEAGMNFTEYLTGIRIETAKRLLSERELSIKQVCVDSGYANPNYFSRIFKKWVG 515 Query: 228 VTPHQFA 234 +TP +F Sbjct: 516 ITPTEFR 522 >UniRef50_A3DHI5 Transcriptional regulator, AraC family n=5 Tax=Clostridium RepID=A3DHI5_CLOTH Length = 302 Score = 145 bits (367), Expect = 9e-34, Method: Composition-based stats. Identities = 40/249 (16%), Positives = 82/249 (32%), Gaps = 16/249 (6%) Query: 6 SVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPD-----TRRLDIDELTVCH 60 V + R + I++++ N F S Sbjct: 50 MVYIKRGKAVFEIAGYPAEIGPNDIIIIKPNQPHKFIVKSESGCEFIVLSFKFVNRFDGQ 109 Query: 61 YLQNIRQLPRNLGLHSKDRLLI-----NQSPPMPLVTAIFDSFNESGVNSPILSNMLYLS 115 Y + + + I ++ + L+ I + S L+ +L + Sbjct: 110 YSDVSLENFLDFVSGKETGPFITLKVSQKNDIIVLLNRILKERENPDIGSEFLNYLLVME 169 Query: 116 CLSMFSHK-----KELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIK 170 + S + I I + I+ + + L+DIA ++ S S Sbjct: 170 LFVLISRALKMEWENSIKNKSPKIKELIQASVNYINNNYERDISLKDIARYVFLSTSYFT 229 Query: 171 KKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVT 229 + ++E LL R+ A+ LL+ + IA G+S+ F + F++Y +T Sbjct: 230 RAFKEEMGISPINYLLKIRVERAKELLKDTDNRISDIALSVGFSNQQRFNDIFKKYVKLT 289 Query: 230 PHQFAQHSP 238 P Q+ ++ Sbjct: 290 PLQYRKNVQ 298 >UniRef50_C0EIL7 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EIL7_9CLOT Length = 332 Score = 145 bits (367), Expect = 9e-34, Method: Composition-based stats. Identities = 43/255 (16%), Positives = 97/255 (38%), Gaps = 25/255 (9%) Query: 7 VILIRRSF-DIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDEL--------- 56 V + S +++ Q++I L+ ILLL N D +I Sbjct: 80 VYVYHGSCVNLFPNQERIVLNQGDILLLNPNALHCPYTTLEDDYIFNIVLKPKLFEKSML 139 Query: 57 -----------TVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNS 105 +Y+ + + + H+ I Q+ ++T ++ + Sbjct: 140 SLLSDNPLFSNFFVNYMYRVNKARDYMLFHTNGEKRIAQT-MENIITELYSKEMCYRRAA 198 Query: 106 PILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTS 165 ++ +CL+ ++ + + + + + ++ L+ +A+ S Sbjct: 199 EA-ELIVLFTCLARIYKEQLGLKGFDEVKNKQVTDIITYMDENFSQA-TLQSVADHFGYS 256 Query: 166 ESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQ 224 + + ++ N FS+I+ + ++ A LE IP+ IAE G++ SYF F+Q Sbjct: 257 THYLSRMIKKHTNKNFSEIIHSFKLENACTYLETTDIPMREIAELVGFNDASYFHKVFKQ 316 Query: 225 YYGVTPHQFAQHSPG 239 YG +P ++ + + Sbjct: 317 KYGQSPAEYRKQTEA 331 >UniRef50_C6IWY8 Helix-turn-helix domain-containing protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IWY8_9BACL Length = 293 Score = 145 bits (367), Expect = 1e-33, Method: Composition-based stats. Identities = 34/243 (13%), Positives = 73/243 (30%), Gaps = 14/243 (5%) Query: 9 LIRRSFDIYHEQQKISLHNESILLLEKNLADDFA-----FCSPDTRRLDIDELTVCHYLQ 63 L+ + + Q + ++L+ N+ + + ++ V L Sbjct: 41 LVSGERCYFIKDQIYRIGAGDLVLIPVNVLHKTSPSGKLSQPHERILVNFRTEVVSALLP 100 Query: 64 NIRQLPRNLGLHSKDRLLINQSPPM--PLVTAIFDSFNESGVNSPILSNMLYLSCLSMFS 121 + L L + + L+ + + +L L Sbjct: 101 GREEELEQLFAKYPVLRLSAEEQQLVQQLLARMLAEQKQQAGGYEEYCQLLLAELLLNLL 160 Query: 122 HKKELIPLLFNSIS------TVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKL-Q 174 P +V R I+ + L D+A R + S + + Sbjct: 161 RMANARPNHDGEEGGGKRPYREIAEVARYINAHYDENLSLSDLANRFHLSPYYLSHLFPR 220 Query: 175 DENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFA 234 + R+ A LL ++P+ IA + GY S ++F F++ V+P + Sbjct: 221 VTGLTLVAYINRVRIEEACALLRETELPVTEIAYRVGYQSGTHFGRVFKKAKAVSPQSYR 280 Query: 235 QHS 237 + Sbjct: 281 REQ 283 >UniRef50_C9KMJ8 Methylphosphotriester-DNA alkyltransferase n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KMJ8_9FIRM Length = 283 Score = 145 bits (366), Expect = 1e-33, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 96/238 (40%), Gaps = 11/238 (4%) Query: 6 SVILIRRS-FDIYHEQQKISLHNESILLLEKNLADDFAFCSP------DTRRLDIDELTV 58 ++ I + ++ ++ + LH + ++L+ + DF S L + L Sbjct: 45 EILFIEKGHCRMHLKEGSLQLHTDDLILVNSDTLHDFKTSSSFTAFTIHIGALHLCGLAP 104 Query: 59 CHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLS 118 H ++ L LG + L + L+ A+ +E L+ L +S + Sbjct: 105 GHLTKSEAPLVLPLGKDGRHIFLRQLLKEVKLLAALKGEDDERCEIGAALAQALVISVTA 164 Query: 119 MFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD-EN 177 + N T+ +++ I + L DIAE ++ + + +D Sbjct: 165 LAEEDAGNEE---NPSFTMGTRIKEYIDAHYLEDLKLADIAEALHINLYYLSHTFKDLTG 221 Query: 178 TCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 + + ++ R+ A+ LL + + IA +CGY++++YF + F G+ P ++ + Sbjct: 222 SSPMQYIIRRRIEEAQTLLLTTNMTITDIAMQCGYNNSNYFQSVFSNIVGMPPGKYRK 279 >UniRef50_C9KMM0 Putative AraC-type DNA-binding domain-containing protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KMM0_9FIRM Length = 248 Score = 145 bits (366), Expect = 1e-33, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 79/233 (33%), Gaps = 6/233 (2%) Query: 6 SVILIRRS-FDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQN 64 +IL+ + +L + + D D L L V + Sbjct: 9 EIILVTGGRGSFNIDTGHYLASPGDVLFFDSGILHDETTIDGD---LATSCLGVSDFQLP 65 Query: 65 IRQLPRNLGLHSKDRLLIN-QSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHK 123 R+ +G +L ++ Q + + +G +L + + Sbjct: 66 GRRANEMVGRLYAPQLSLDAQFDAVRTLFHTAVQLALAGDAPCVLDQLTCAILCKLDEEL 125 Query: 124 KELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSK 182 ++ V+ I + L+ IA + + + ++ + Sbjct: 126 ARHGQPPRPQQESLGLTVKAYIDAHYRESITLQSIAAELNFNPYYLAHAFREHIGYSPMQ 185 Query: 183 ILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 ++ R+ A+ LL + IA CGY++++YF + F++ G+TP Q+ + Sbjct: 186 YIIRRRIGEAQNLLIGTDRSITEIAFSCGYNNSNYFQSVFKRLVGMTPGQYRR 238 >UniRef50_C6CSY2 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CSY2_PAESJ Length = 533 Score = 145 bits (366), Expect = 1e-33, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 57/154 (37%), Gaps = 1/154 (0%) Query: 83 NQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVE 142 ++ P + + + + + Y++ LS + S ++ Sbjct: 369 SEWPAITTASPLLADQRAIDSVMTLSALHAYVAELSAAIEAHIRARASSSDASNPMSEIV 428 Query: 143 RLISFDIAKRWYLRDIAERMYTSESLIKKKLQD-ENTCFSKILLASRMSMARRLLELRQI 201 + + L D+A R + S + ++ + F + + RM A LL Sbjct: 429 AYLDGHYFEDVGLIDMATRYHMDPSYLSRQFKAATGVNFIEYVTRKRMEKACELLRESDR 488 Query: 202 PLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 + IAE GY + YF F+++ G TP +F + Sbjct: 489 KVSDIAELVGYENQRYFSQVFKKFTGQTPSEFRE 522 >UniRef50_P33234 HTH-type transcriptional regulator adiY n=102 Tax=Enterobacteriaceae RepID=ADIY_ECOLI Length = 253 Score = 145 bits (365), Expect = 2e-33, Method: Composition-based stats. Identities = 65/239 (27%), Positives = 106/239 (44%), Gaps = 6/239 (2%) Query: 5 CSVILIRRSFDIYHEQQK-ISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYL- 62 C V+L + I ++ ISL + LL +T I + YL Sbjct: 9 CIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLR 68 Query: 63 ---QNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSM 119 +++ Q+P + L +P + V A + + L + LS Sbjct: 69 FLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSR 128 Query: 120 FSHKKELIPLLFNSIST-VSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENT 178 F K+ + L+ + VS V ++I DI K W L +A + S SL+KKKL+ ENT Sbjct: 129 FLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENT 188 Query: 179 CFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 +S+I+ RM A L + + +++ CGY+STSYFI+ F+ +YG+TP + Sbjct: 189 SYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQH 247 >UniRef50_Q2SCQ2 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SCQ2_HAHCH Length = 276 Score = 145 bits (365), Expect = 2e-33, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 93/230 (40%), Gaps = 6/230 (2%) Query: 7 VILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIR 66 +I++ R + Q +++ + +L + F V + + Sbjct: 42 LIIVLRGAKVLSLQPELACRSGEFILAPAGIELQFMNLPEGEYI-----AVVIGFCASDL 96 Query: 67 QLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKEL 126 + +D I + L + N V+ P L + + + Sbjct: 97 EAIPVSAPPDRDGAAIARV-DRTLAEFLNQWINWIDVSPPELWALRRKELAHLLYARGYG 155 Query: 127 IPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLA 186 L S ++ KV ++ + AK W L +I+ + SES ++++LQ EN F +L + Sbjct: 156 SLLKSRSGASWRRKVSEVLMQEPAKDWSLLEISRLLAVSESTLRRRLQSENAGFRDLLES 215 Query: 187 SRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 R+ + L + +P+ IA++CGY S S F F+Q +G+TP + Q Sbjct: 216 VRLGIGLHLAQTTLLPIAHIADQCGYQSQSRFTERFKQRFGMTPSELRQT 265 >UniRef50_C5ETL2 Two component transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ETL2_9FIRM Length = 517 Score = 145 bits (365), Expect = 2e-33, Method: Composition-based stats. Identities = 40/214 (18%), Positives = 79/214 (36%), Gaps = 19/214 (8%) Query: 42 AFCSPDTRRLDIDELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTA---IFDSF 98 F P +DI +++ + + +D Q + A + D+ Sbjct: 304 EFHFPADISMDIKNALCRGLPEDVGKSGELFIRYMEDGPYKEQEIRQAYLKAVYLLLDTI 363 Query: 99 NESG-------VNSPILSN-MLYLSCLSMFSHKKELIPLLFNSI-------STVSGKVER 143 E N+ +LS ++ M ++ + LL + + + Sbjct: 364 REIDGTAYTQMQNADLLSKCTEAVTLREMEQSYRDGLALLCSPRRMKEDISNYTIKRAIN 423 Query: 144 LISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIP 202 I + L ++A R+ + + E FS L R+S A+RLL+ + Sbjct: 424 YIREHYKEGISLEEVAGRLGITPEYLSTLFNREMGENFSTFLRKFRISHAKRLLKGTDMK 483 Query: 203 LHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 ++ IAE+ GY+ YF F++ G++P + Q Sbjct: 484 VYEIAEEVGYTDPKYFARVFKEELGISPGDYRQQ 517 >UniRef50_UPI0001789626 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789626 Length = 305 Score = 144 bits (364), Expect = 2e-33, Method: Composition-based stats. Identities = 35/227 (15%), Positives = 87/227 (38%), Gaps = 12/227 (5%) Query: 20 QQKISLHNESILLLEKNLADDFAFC---SPDTRRLDIDELTVCHYLQNIRQLPRN----- 71 ++ + L ++L+ + S ++ + ++R + Sbjct: 60 EKSVILKKGEFMVLDAGVPHRLIVDQAASCRMLNVEFGFMESEGMAPSLRHIVGEEEEVS 119 Query: 72 --LGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPL 129 L + +L +Q P++ ++ ++ G + ++++ L++ L + E Sbjct: 120 FLLKRPFRYLVLADQEEVYPVLKSLVLELDQRGTDGRMMTHALFIQLLVCIARLYEERER 179 Query: 130 LFNSISTV-SGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD-ENTCFSKILLAS 187 S + + + ++ ++D+A + + + + ++ L Sbjct: 180 SDMQQSDFYIKRSVDYLHQNYDRQIQVKDVAAEVNLHPGYLHRVFRRGTGRTITEYLTTI 239 Query: 188 RMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFA 234 RM A+ LLE IP+H I++ G S YF F++Y G TP ++ Sbjct: 240 RMEKAKMLLEQTDIPIHEISDYVGVGSRQYFHMLFKKYTGSTPVEYR 286 >UniRef50_UPI0001789C33 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789C33 Length = 293 Score = 144 bits (364), Expect = 2e-33, Method: Composition-based stats. Identities = 40/234 (17%), Positives = 89/234 (38%), Gaps = 13/234 (5%) Query: 17 YHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIR-------QLP 69 Y E Q I + + ++ + F S D + + + + L+ ++ +L Sbjct: 52 YVEDQLIPIKRGDLFVIPIGTSHVFRPSSQDNQLVIYNCIFRTCLLEQLKSVICESTKLH 111 Query: 70 RNLGLHSKDRLLINQSPP----MPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKE 125 L S + + ++ +F + + G L + L+M + Sbjct: 112 SLLYGSSPSAKWLQYQDKFDKFLSIMHGMFREYLKKGPRYEFLMMGQLIQVLAMLQRYEC 171 Query: 126 LIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKIL 184 ++ + + + I+ A ++ +AER + S S ++ + F + L Sbjct: 172 DGSMVSTPTNNM-DDAIQYINDHFATNLTVQQVAERSFMSPSHFQRLFKKTTGVTFMQFL 230 Query: 185 LASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSP 238 R+ LL+ +I + A + GY +F + FR+ GVTP ++ + +P Sbjct: 231 QNIRVQRCCELLKSTEISIQEAANQVGYQDMKFFHSLFRKKTGVTPREYRRSTP 284 >UniRef50_C1I9Z9 AraC family transcriptional regulator n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I9Z9_9CLOT Length = 284 Score = 144 bits (364), Expect = 2e-33, Method: Composition-based stats. Identities = 42/239 (17%), Positives = 91/239 (38%), Gaps = 10/239 (4%) Query: 9 LIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQL 68 + S D E +K +L +L+ + F + R LT + N+++ Sbjct: 46 ITSGSVDYLIEGEKYTLKKGQVLISNPGVYHQELFEANTNCRELHIGLTNLNLFSNVKKD 105 Query: 69 PRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHK----- 123 ++G + + + I + SP + L + L + + Sbjct: 106 YIDIGNKNVLTFTKYKDEILKSCLEIVEEQKTYNQTSPFMLKSLVMKLLVLLYREINEED 165 Query: 124 ----KELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD-ENT 178 + + + + ++ + + L +++ MY S I K ++ Sbjct: 166 TTRDSKEFSFKSREKKALVESITKYLTENYTEDISLYTLSKNMYLSPVYISKIFKELMGD 225 Query: 179 CFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 L+ R+S A+ LL+ ++ + +IA+ GYS YF +++YYGV+P++ S Sbjct: 226 SPINYLIQIRLSKAKELLDDSKLSIKSIAKMVGYSDPYYFSKLYKKYYGVSPNKSRNAS 284 >UniRef50_UPI0001C353D2 AraC family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C353D2 Length = 286 Score = 144 bits (364), Expect = 2e-33, Method: Composition-based stats. Identities = 37/238 (15%), Positives = 80/238 (33%), Gaps = 9/238 (3%) Query: 7 VILIRRSFDIYHEQQKISLHNESILLLEKNLAD--DFAFCSPDTRRLDIDELTVCHYL-Q 63 + +I +F + + + ILL+ C + + L+ Y + Sbjct: 44 IHIISGTFHVTINETTRNAVPGDILLVNSGGLHGGTPYDCVYECLVFPVSLLSSQTYASE 103 Query: 64 NIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHK 123 + +L R + + + + L+ +F +S + L + + Sbjct: 104 FLNRLDRQDLILDEYFPAGDDTAIHSLLERLFALMQDSDEGGKLQCLGLLYQFMGLLLQD 163 Query: 124 KELIPLLFNSIST-----VSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD-EN 177 + + +ST + V I ++ L ++A S + Sbjct: 164 RRYTASDKSDLSTHRNIYLLKNVLNYIEAHYTEKITLHELARTAGMSSKYFCHFFSEMTG 223 Query: 178 TCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 + R+ A LL + IA CG++ SYF F++Y G++P Q+ + Sbjct: 224 RTPIDYVNYYRVERACCLLAGIGHSITDIAMLCGFNDVSYFTRAFKKYKGISPGQYLK 281 >UniRef50_D1PMJ1 Transcriptional regulator, AraC family n=2 Tax=Ruminococcaceae RepID=D1PMJ1_9FIRM Length = 285 Score = 144 bits (364), Expect = 2e-33, Method: Composition-based stats. Identities = 38/236 (16%), Positives = 82/236 (34%), Gaps = 9/236 (3%) Query: 2 THVCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHY 61 H +++ +L + L + N +A D Sbjct: 41 DHYLIHLVVAGKGVYQVGGVSHTLQEGDLFLAKPNQLITYAADETDPWEYYWVGFNGACA 100 Query: 62 LQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVN---SPILSNMLYLSCLS 118 + ++Q P + P + A+++ + G +++ LY+ Sbjct: 101 NKLVQQTPFSDLHPVHHC-----KDPQAVREALYNIYLSRGPEPQCEALMTGYLYIFMAH 155 Query: 119 MFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKL-QDEN 177 + ++ +P + +S S + I F+ + + DIA+ + S S + + + Sbjct: 156 LMKEARDAMPNVGSSSSQYVLSAIKYIQFNYSHDISVDDIAKAVGVSRSHLYRVFMANVG 215 Query: 178 TCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 L R+S A LL+ + + IA G+ YF F++ GV P ++ Sbjct: 216 QSPIDYLTNYRISEACSLLKNSNLSIAEIAVSVGFFDQFYFSRVFKKVKGVPPSKY 271 >UniRef50_Q9EYV5 HTH-type transcriptional regulator gadX n=60 Tax=Bacteria RepID=GADX_ECO27 Length = 274 Score = 144 bits (364), Expect = 2e-33, Method: Composition-based stats. Identities = 57/233 (24%), Positives = 103/233 (44%), Gaps = 8/233 (3%) Query: 11 RRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPR 70 + + + ++ + + + T+ +L +++ Sbjct: 15 HKYILTMVNGEYRYFNGGDLVFADASQIQVDKCVENFVL---VSRDTLSLFLPMLKEEAL 71 Query: 71 NLGLHSK-DRLLINQS-PPMPLVTAIFDSFNESGV--NSPILSNMLYLSCLSMFSHKKEL 126 L H K LL++ +P+ + + + L + LS+F + Sbjct: 72 KLHAHKKVPSLLVHHCTRDIPVFQEVAQLSQNKNLRYAEMLRKRALIFALLSVFLEDTQF 131 Query: 127 IPLLFNSIS-TVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILL 185 IPLL N + + +V +I+ +IA W L IA + S SL+KKKL++E T +S++L Sbjct: 132 IPLLLNVLQPNMRTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKLREEGTSYSQLLT 191 Query: 186 ASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSP 238 RM A +L+ + + + +A CGY S SYFI FR YYG+TP ++ + S Sbjct: 192 ECRMQRALQLIVIYGVSIKRVAVSCGYHSVSYFIYVFRNYYGMTPTEYQERSA 244 >UniRef50_A8RR78 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RR78_9CLOT Length = 281 Score = 143 bits (361), Expect = 4e-33, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 75/235 (31%), Gaps = 8/235 (3%) Query: 9 LIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRR---LDIDELTVCHYLQNI 65 L+ ++ Q L + ++ + + TV +L Sbjct: 46 LLSGKCKMFINQDIYYLEPGDMTIIPPLEVHKALYEPSWEAERFGIYFSRDTVTSFLSLC 105 Query: 66 RQLPRNLGLHSKDRLLINQ--SPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHK 123 + R + ++ L+ + D + I L L + Sbjct: 106 GREAFGHIFSQPKRTIPSEFRPKIEELLAQMQDEEKQGDSYCQIQLCSLLHQILVVLGRC 165 Query: 124 KELIPL--LFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD-ENTCF 180 +E + R ++ + L +A S + KK + CF Sbjct: 166 QEARREGHALEEAEEAMVRAARYMNQHYQEGVTLGQVAAFANMSPTYFSKKFKSSTGLCF 225 Query: 181 SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 + L R+ A +L + + +A CG+S +YF + FR+ GV+P ++ + Sbjct: 226 KEYLNYIRVQKASDMLRNTDLSVTGVAMACGFSDGNYFGDVFRRLTGVSPREYRK 280 >UniRef50_D0YX71 Transcriptional regulator AraC family protein n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0YX71_LISDA Length = 321 Score = 143 bits (361), Expect = 5e-33, Method: Composition-based stats. Identities = 47/241 (19%), Positives = 105/241 (43%), Gaps = 14/241 (5%) Query: 11 RRSFDIYHEQQKISLHNESILLLEK------NLADDFAFCSPDTRRLDIDELTVCHYLQN 64 D+ Q +++ + + L++ K + + + + L + E T+ + Sbjct: 58 NGDGDVCINGQSVTISSNATLVIPKFSHISCTINQKDCHKNIELQLLMVGEETIAQSFKY 117 Query: 65 IRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNES-------GVNSPILSNMLYLSCL 117 + L + + + + + +V F F +S + L+ L+ L Sbjct: 118 MASLKQPNTPTANCMPVYHLNETPDVVEQNFQLFQQSLPAVADTRLEKTFLTQSLFFILL 177 Query: 118 SMFSHKKELIPLLFNSISTVSGK-VERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE 176 ++ ++ + + + + RLI+ D ++W + D+A+ ++T++S +++ L E Sbjct: 178 ALNEAGIDVFNVYRFNYDEPKERTIARLITQDPQRKWSVDDMAKALFTTQSTLRRHLAKE 237 Query: 177 NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 FS++LL RM +A L + I + G+ S +YF + F++ YG+TP QF Sbjct: 238 GVSFSQLLLDVRMGLALNYLTFSNYSISQIGHRSGFGSAAYFCDAFKRKYGITPSQFRAT 297 Query: 237 S 237 S Sbjct: 298 S 298 >UniRef50_A7VID9 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=A7VID9_9CLOT Length = 289 Score = 143 bits (361), Expect = 5e-33, Method: Composition-based stats. Identities = 37/245 (15%), Positives = 90/245 (36%), Gaps = 14/245 (5%) Query: 6 SVILIRRSF-DIYHEQQKISLHNESILLLEKNLADDF-----------AFCSPDTRRLDI 53 +I ++ F + + ++ Sbjct: 41 EIIYVKSGFLTVNISGENYIGKPGDAFVVSPGNLHFMGSKTGTVDYFTFLFPLKYISFYT 100 Query: 54 DELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLY 113 D++ L+ + + KD + + + A S E + + I + ++ Sbjct: 101 DDILDDRLLEPLDSGRLMISPSVKDTIKELCEQLIEIYEA-KKSERELNITTQIKTKIIL 159 Query: 114 LSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKL 173 L + K ++ + + V ++ I + + L++ E+ + SE I + Sbjct: 160 LQFILEMWEKGFIVENNTSGRNIVEKEMVSYIQQNFTGKISLKEFGEQFHLSEKYISRYF 219 Query: 174 QDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQ 232 ++ + S+ + R+ A++LL+ I + A + GY + SYFI +F++ YGV+P + Sbjct: 220 KEHFHITLSQYVAYLRLEYAKQLLQDTDISVTEAAMRSGYQNISYFIRSFKKTYGVSPLK 279 Query: 233 FAQHS 237 + + Sbjct: 280 YRKKQ 284 >UniRef50_C6JCU7 Transcriptional regulator n=3 Tax=Ruminococcus RepID=C6JCU7_9FIRM Length = 282 Score = 143 bits (360), Expect = 6e-33, Method: Composition-based stats. Identities = 35/244 (14%), Positives = 80/244 (32%), Gaps = 17/244 (6%) Query: 6 SVILIRRSFDIYHEQQKISLHNESILLLEKNLADD--FAFCSPDTRRLDIDELT-----V 58 + ++ S + +++ + ++ + + C D++ Sbjct: 43 IIRILEGSLTVTLDEKSFTAVKNDVIFVHSGILHSGIPHDCVYQCIVFDMNTFLKNNPVC 102 Query: 59 CHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLS 118 Y+Q I L H D + ++ +FD+ E + + Sbjct: 103 GEYIQKILHQETMLFPHFSD----EHPQILNCISVLFDAMYEKDTGYELTVFGQFYHFFG 158 Query: 119 MFSHKKELIPLLFNSISTV-----SGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKL 173 + I + +V I + A L++++ + S + Sbjct: 159 LIFSNHYFIENPTRTRRDYKRILQLKQVLEFIEKNYANPITLQELSASVSMSPKYFCRFF 218 Query: 174 QD-ENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQ 232 + + L R+ A L + IA + G++ SYFI TF++Y G+TP + Sbjct: 219 SEMTHQTPVDYLNRQRIEEACLQLAATDDSITEIAYRNGFNDLSYFIRTFKKYKGMTPGK 278 Query: 233 FAQH 236 + + Sbjct: 279 YKRR 282 >UniRef50_C6QRS7 Two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y4.1MC1 RepID=C6QRS7_9BACI Length = 269 Score = 143 bits (360), Expect = 6e-33, Method: Composition-based stats. Identities = 37/244 (15%), Positives = 82/244 (33%), Gaps = 10/244 (4%) Query: 9 LIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSP-DTRRLDIDELTVCHYLQNIRQ 67 L+R +F + ++ K ++ +K + ++I V ++ ++ Sbjct: 12 LVREAFKVILKKMKETVVIGEASSGKKAMELFCKTQPDITFLDINIPGTDVFDLIEFMKG 71 Query: 68 LP-RNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKEL 126 + +N + L + D + + ++ + Sbjct: 72 IYHKNSIILLSGYDLFGSEILQRALEMGADEILMKPSHQEDVIALIRRYMTFNEKENDKF 131 Query: 127 IPLLFN-------SISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NT 178 +L V I + L ++AE ++ S + K + E Sbjct: 132 DSMLDGITAKNSIQDGKVIQSALNYIEENYQNGITLEEVAEHVHISPFYLSKLFKKELKM 191 Query: 179 CFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSP 238 F + +M A+ LLE +P+ IA + Y +YF F++ G+TP ++ + S Sbjct: 192 NFVSYVTEKKMQKAKELLENTDLPVIHIALELNYQEPNYFSKVFKKVVGITPSEYRKRSK 251 Query: 239 GTFS 242 S Sbjct: 252 KGLS 255 >UniRef50_D2THV7 AraC-family transcriptional regulator n=6 Tax=Enterobacteriaceae RepID=D2THV7_CITRO Length = 284 Score = 143 bits (360), Expect = 6e-33, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 81/234 (34%), Gaps = 5/234 (2%) Query: 8 ILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSP-DTRRLDIDELTVCHYLQNIR 66 I++R + E+ + L +L + A+ P L + R Sbjct: 53 IVLRGEYGNQLEKSQHRLVEGEMLFIPARAANLPISEKPVMLLSLVFAPAWFGLSFYDTR 112 Query: 67 QLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKEL 126 L + + ++TA+ + + L LS L + Sbjct: 113 SASLLRPLRRIELPHPQRGEGEAMLTAL--THLSRSPQEQAIIQPLVLSLLHLCRSVVNT 170 Query: 127 IPLLFNSISTVS-GKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENT-CFSKIL 184 P + + + + + A+ +A + + + + T F + Sbjct: 171 PPDIRRPRAEFLYHSICNWVQDNYARPLSRESVATFFNITPNHLSRLFTRHGTMSFVDYV 230 Query: 185 LASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSP 238 RM+ AR +L+ + ++ +A++CGY + YF FR+ +G+TP ++ Sbjct: 231 RWVRMAKARMILQKYHLSVNEVAQRCGYEDSDYFCRLFRRQFGLTPGEYRARFQ 284 >UniRef50_C6LLM9 Two-component response regulator n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LLM9_9FIRM Length = 516 Score = 143 bits (360), Expect = 7e-33, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 64/149 (42%), Gaps = 1/149 (0%) Query: 89 PLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFD 148 P++ I + S + +L + + +E S + +++R I Sbjct: 357 PVLDDILNEQIFSVNDCSSSEELLEKVKVILQELTREDQRTGETGSSRIVQEIKRYIQEH 416 Query: 149 IAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIA 207 A+ L +A+++Y S + + E ++ LL RM A++ L + ++ +A Sbjct: 417 YAENINLNALADQVYLSPKYLSDLFKRETGENYTSYLLYVRMEHAKKYLMQFDLKIYEVA 476 Query: 208 EKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 E GY+S FI F++ GVTP ++ Sbjct: 477 ELTGYASPKQFIRVFKKEVGVTPGEYRNQ 505 >UniRef50_B8I425 Two component transcriptional regulator, AraC family n=2 Tax=Clostridium RepID=B8I425_CLOCE Length = 538 Score = 142 bits (359), Expect = 8e-33, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 82/212 (38%), Gaps = 9/212 (4%) Query: 24 SLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRNLGLHSKDRLLIN 83 ++ + + L +++N + + + + L +I + ++ ++ Sbjct: 331 NIKSGNELGVKENTKLISDYLTNNNINIHYMRNFYYTTLSSINNIRISVSSVDTEKKYSE 390 Query: 84 QSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVER 143 L+ I + +NS + + ++ ++ SI + K Sbjct: 391 GEDIASLIKLIEKTDKAEELNSLLEEVAVRIA--------SKVNSFNNKSIKLILRKAID 442 Query: 144 LISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIP 202 I ++ L ++AE +Y S I + + E F L R+ A+ LL+ + Sbjct: 443 YIQEHYNEQVTLNEVAENIYVSTFYISRMFKKELGKSFVDYLNDVRIDKAKELLKDVRYK 502 Query: 203 LHTIAEKCGYSSTSYFINTFRQYYGVTPHQFA 234 + +AEK G S YF F++Y G+TP ++ Sbjct: 503 TYEVAEKVGISDPHYFSKLFKKYSGMTPSEYR 534 >UniRef50_C6LGW7 DNA-binding response regulator n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LGW7_9FIRM Length = 504 Score = 142 bits (359), Expect = 8e-33, Method: Composition-based stats. Identities = 36/205 (17%), Positives = 73/205 (35%), Gaps = 5/205 (2%) Query: 38 ADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDS 97 + C+ L D Y++N++ P + ++ + + Sbjct: 300 KLKVSICNGTAEELKRDAEAFMRYVRNLKCSPVYFRKAYGKMIAFMENVCSEVNPQAYRR 359 Query: 98 FNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTV----SGKVERLISFDIAKRW 153 ES + + + + F + E+I + + + I + Sbjct: 360 MQESEIEKTAATALTIKTLEDCFRREIEIILSEKDKKEDIRNYTIRRAINFIREHYRENI 419 Query: 154 YLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGY 212 L +AE + + + E F+ L R+S A+RLL+ ++ I+E+ GY Sbjct: 420 SLELLAEHLEITPEYLSTLFNKEVGINFTTFLKRFRISHAKRLLKGSSKKIYEISEEVGY 479 Query: 213 SSTSYFINTFRQYYGVTPHQFAQHS 237 YF F++ GV+P + Q S Sbjct: 480 HDPKYFNRVFKEEVGVSPGDYRQMS 504 >UniRef50_C6LA91 Putative transcriptional regulator n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LA91_9FIRM Length = 288 Score = 142 bits (359), Expect = 8e-33, Method: Composition-based stats. Identities = 41/241 (17%), Positives = 78/241 (32%), Gaps = 15/241 (6%) Query: 11 RRSFDIYHEQQKISLHNESILLLEKNLADDFAF---CSPDTRRLDIDELTVCHYLQNIRQ 67 ++ + +LH + + + D L Y Sbjct: 47 HGVLNLTVRGRSFTLHPGEFCFINSGELHEIKSGGPSLHHAIVFNPDILDFTLYDICQHS 106 Query: 68 LPR-----NLGLHSKDRLLINQSPPMPL--VTAIFDSFNESGVNSPILSNMLYLSCLSMF 120 R NL + + + M L + I ++ + + + L L +F Sbjct: 107 FIRPVTSGNLIFPTLPSVFSPEESQMILFHMQEIIRLYHTLPSCASLSIKIHILQILELF 166 Query: 121 SHK----KELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE 176 + I KV I + A L D+A+ + S + + E Sbjct: 167 FQADCFLENTISSKEKDSQNKLKKVIEYIHENYAGPISLPDLAKICFMSPNYFCHYFKQE 226 Query: 177 -NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 + R+ A ++L ++P+ +A G+ + SYFI FR+Y VTP ++ Sbjct: 227 IGKPPIAFINEYRIQKACQILTDSELPVSQVAISVGFDNFSYFIRKFREYKNVTPTEYRS 286 Query: 236 H 236 H Sbjct: 287 H 287 >UniRef50_B7AP83 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7AP83_9BACE Length = 278 Score = 142 bits (359), Expect = 8e-33, Method: Composition-based stats. Identities = 45/248 (18%), Positives = 93/248 (37%), Gaps = 13/248 (5%) Query: 2 THVCS--VILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVC 59 +H C V L +I + +++++ ++ S D R L Sbjct: 27 SHDCYELVYLFSGECNILVSHTIYRMVPGTLVIIPPGEIHKTSYGSNDKVRQQRTALRFS 86 Query: 60 ----HYLQNIRQ---LPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNML 112 +L + + NL + + L+T + S + L Sbjct: 87 IKDTDWLCSALGKDFVKDNLTAGIIEVPDKRKEYIENLITRMIYENQMPDELSMGMVKTL 146 Query: 113 YLSCLSMFSHKK---ELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLI 169 + + K + ++ ++ V + + K+ YL D+A++ S S + Sbjct: 147 FQEFMIFVLRCKLYGDTSAHEIDAQNSTIQDVATYVYNNYDKQIYLDDVAKQFSISRSYL 206 Query: 170 KKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGV 228 KK + F + LL R+ A RLL + IA CG++ ++YF + FR+ G+ Sbjct: 207 SKKFKQTTGFGFKEYLLNVRIKEACRLLLETNHSITDIAFACGFNDSNYFGDAFRRIKGI 266 Query: 229 TPHQFAQH 236 +P+++ + Sbjct: 267 SPNKYRHN 274 >UniRef50_UPI0001788F54 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788F54 Length = 523 Score = 142 bits (359), Expect = 8e-33, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 62/178 (34%), Gaps = 3/178 (1%) Query: 62 LQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFS 121 + + N + L + L A +D F + + + Sbjct: 342 IFEFKSSLGNFIFNVATTLGKMKVETGSLENAKYDYFRKIDEAR--YAGEAIAVVEAFIR 399 Query: 122 HKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCF 180 + I S++ ++ I A L +A + + + S + F Sbjct: 400 EAERAIGETNTSVNPNMDRLLEYIQDHYADPITLTGVARQFHFNASYLSSYFASYNGEGF 459 Query: 181 SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSP 238 S+ L R+ A LL ++ + I+ GYS SYF F++ G++P QF + + Sbjct: 460 SEYLNKIRLEKAMELLLTTELTISEISASVGYSDQSYFTKVFKKQTGISPSQFRRQNA 517 >UniRef50_A4XJ07 Transcriptional regulator, AraC family n=2 Tax=Clostridia RepID=A4XJ07_CALS8 Length = 283 Score = 142 bits (359), Expect = 8e-33, Method: Composition-based stats. Identities = 42/246 (17%), Positives = 97/246 (39%), Gaps = 11/246 (4%) Query: 6 SVILIRR-SFDIYHEQQKISLHNESILLLEKNLADDFA---FCSPDTRRLDIDELTVCH- 60 +I +++ + + + E +KI L +L+++ + F + + Sbjct: 35 ELIFVKKGNIEFWVEDEKIELRAGDLLIIKPHTRHKFEVVGNFKAEFIVMGFYLKPESKS 94 Query: 61 ---YLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCL 117 L+ I +L S I+ + + E+ N L + L Sbjct: 95 KIEALKEIYGFLESLENISSPFYFIHIRKRSNVFFCLESILQEAKENKKGLLLYIKSIEL 154 Query: 118 SMFSHKKELIPLLFNS--ISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQ- 174 ++ ++ + S ++ ++ I + + + DIA++++ SES I + + Sbjct: 155 FIYITREMNNLEIKKGFDYSKIAKFIKDYIDQNYMEDIKIGDIAKKLFMSESSISRLFKS 214 Query: 175 DENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFA 234 + LL+ R+ A+ L + + + IA CG+SS F + F++Y G +P + Sbjct: 215 QFGILPKEYLLSKRIEKAKEYLSVSNLKISEIAIMCGFSSLQRFNDIFKKYTGCSPTHYR 274 Query: 235 QHSPGT 240 + + G Sbjct: 275 KLTFGN 280 >UniRef50_A0Q2M6 Transcriptional regulatory protein n=6 Tax=Clostridium RepID=A0Q2M6_CLONN Length = 246 Score = 142 bits (359), Expect = 8e-33, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 62/158 (39%), Gaps = 1/158 (0%) Query: 81 LINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGK 140 L++ V + + PI + K+ I + + + Sbjct: 87 LMSVYDDFKFVQKALRIKVDDYLLKPIRPQKIVDILNEFIKDNKKRIEESNKNCTEEFQE 146 Query: 141 VERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELR 199 V I + L+D+A+ + S S + K + E F++ + R+ A+ +L Sbjct: 147 VVEYIDKNFKNDITLKDVADHVNFSSSYLSKLFKKEMGINFNRYITKIRIDKAKEILINS 206 Query: 200 QIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 I ++ IA GY+ +YF F++ +TP ++ +S Sbjct: 207 NISINEIAFSVGYNEPNYFCKVFKKIVNMTPSEYRTNS 244 >UniRef50_C9LA22 Transcriptional regulator, AraC family n=2 Tax=Clostridiales RepID=C9LA22_RUMHA Length = 277 Score = 142 bits (359), Expect = 8e-33, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 90/232 (38%), Gaps = 8/232 (3%) Query: 9 LIRRSFDIYHEQQKISLHNESILLLEKNLAD-DFAFCSPDTRRLDIDELTVCHYLQNIRQ 67 + + + E ++I + ++L+ N+ +F + + V + + ++ Sbjct: 47 VTKGTGYFQIEGKQIPVQKNDLILINPNIPHTEFGNKEQPWEYIALGIEGV-QFQYSEKE 105 Query: 68 LPRNLGLHSKDRLLINQSPPMPLVTAIFDSFN-ESGVNSPILSNMLYLSCLSMF-SHKKE 125 P +S L ++ + + I N+L L LS+ S ++E Sbjct: 106 AP---YSYSVFSLSREHREIPWYLSTLVKEIQTQQEGYQTICQNLLELILLSVARSTRQE 162 Query: 126 LIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKIL 184 + + VE+ I+ + L ++ ++ ++ + ++ L Sbjct: 163 FLSAPRQKTTRECRLVEQYINEHYHEDITLDTLSALVHINKYYLVHAFKNYKGVSPINYL 222 Query: 185 LASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 + R+ AR LLE + I E G+SS SYF TFR+ G TP+ + + Sbjct: 223 IQRRVEEARYLLESTNYSVTKIGEISGFSSQSYFSQTFRRLTGTTPNAYRKK 274 >UniRef50_B0K3C5 Response regulator receiver protein n=4 Tax=Thermoanaerobacter RepID=B0K3C5_THEPX Length = 530 Score = 142 bits (359), Expect = 9e-33, Method: Composition-based stats. Identities = 36/242 (14%), Positives = 93/242 (38%), Gaps = 22/242 (9%) Query: 15 DIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHY-LQNIRQLPRNLG 73 + + I + + L+ + ++ +L LQ ++++ + Sbjct: 285 KFFLGEGNIIKKEDIEVFLKPHFV-SLNTKRKQEEMIEFLQLGDSQKALQLLKEVVGEIL 343 Query: 74 LHSKDRLLINQSPPMPLVTAIFDSFNESG----------------VNSPILSNM---LYL 114 +K+ LL Q + ++ I + +E G + + + + L Sbjct: 344 TTTKNNLLECQINLIEIMMRIVKTISEVGMLTGEEGRVFQFCFSHLQKLMRTQNYRGITL 403 Query: 115 SCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQ 174 S +L + + + +V + I+ + K L+++++ +Y + + + Sbjct: 404 WATSFLEEISDLFAGAKRNENNIVERVVKYINENFEKEIRLKELSQTIYLNPEYFSRLFK 463 Query: 175 DE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 E +++ L R+ A++ L + + IA K GY +YF F++ G++P +F Sbjct: 464 KEVGCTYAEYLTRIRIEAAKKYLANPSLTISEIARKVGYQDANYFSKVFKKVVGISPSEF 523 Query: 234 AQ 235 + Sbjct: 524 RK 525 >UniRef50_A6GTF7 Putative transcriptional regulator n=1 Tax=Limnobacter sp. MED105 RepID=A6GTF7_9BURK Length = 340 Score = 142 bits (359), Expect = 9e-33, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 61/171 (35%), Gaps = 3/171 (1%) Query: 69 PRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIP 128 P + + + I Q + + + VNSP L+ L +L Sbjct: 173 PFDAPAWAHEYQRIAQHNSFG-FSQLRVVLGSTLVNSPSLAAD--DEALQRLLRDCDLQL 229 Query: 129 LLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASR 188 + T++ +V + L+ +A + +E + LQ E T F ++L R Sbjct: 230 QRLQAGGTLAQRVRMQLQQSEGHMPTLQAMAAKENLTERTFMRHLQAEGTSFQQLLDEVR 289 Query: 189 MSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPG 239 A +L + IA GY S F TF+++ G TP + Sbjct: 290 QERACWMLAHTDSTVEAIAYALGYEDASNFSRTFKRWCGQTPKDYRHQHAS 340 >UniRef50_B5CXD1 Putative uncharacterized protein n=1 Tax=Bacteroides plebeius DSM 17135 RepID=B5CXD1_9BACE Length = 293 Score = 142 bits (359), Expect = 9e-33, Method: Composition-based stats. Identities = 31/226 (13%), Positives = 71/226 (31%), Gaps = 4/226 (1%) Query: 16 IYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRNLGLH 75 + K ++ ++E +A + + T ++ N ++ Sbjct: 70 YNIGKGKCTVKKNDFFIIEAGTPHVYAASTSHPWSIYWIHFTGEQ--SHLFSELFNRTIY 127 Query: 76 SKDRLLINQSPPMPLVTAIFDSFNE-SGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSI 134 D + + L I + + + + L F + + + Sbjct: 128 IDDSPTARFNDRIQLFNEILVNLEMGYSIENLEYITLCLWYLLGSFRYIPQFREINKPKT 187 Query: 135 STVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKL-QDENTCFSKILLASRMSMAR 193 KV + ++ K+ L D+AE + S + + Q ++ A Sbjct: 188 QDTIQKVINYMKANLDKQLTLEDMAESVNYSPTYLSTLFTQKSGMSPINYFNQLKIQKAC 247 Query: 194 RLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPG 239 +LL+ IA + +S YF F +Y ++P ++ G Sbjct: 248 QLLDFTDKKAKEIAFELAFSDPYYFSKVFTKYMHMSPKEYRMKKKG 293 >UniRef50_C6D5P5 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D5P5_PAESJ Length = 276 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 88/232 (37%), Gaps = 13/232 (5%) Query: 15 DIYHEQQKISLHNESILLLEKNLADDF---AFCSPDTRRLDIDEL--TVCHYLQNIRQLP 69 + + + + + +H I+++ N+ + ++I E Y+ + L Sbjct: 45 EFFIKDRTLVIHEGDIVIISPNILHRTTNTETPEHERLIVNIHEKHMAAGSYVDVLHPLS 104 Query: 70 RNLGLHSKDRLLINQSPPMPLVTAIFDSFNE-----SGVNSPILSNMLYLSCLSMFSHKK 124 L K L ++ ++ + +E + +L + C S Sbjct: 105 EREYLIVK-CTLQDRLAIETMLQTMIAEMSEKKPGFELYALTLALQLLLICCRHAKSSSM 163 Query: 125 ELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD-ENTCFSKI 183 E + +S V R ++ L +AE+ Y S + + ++ F + Sbjct: 164 ETLESPSPMHERISE-VVRYMNSHYMNELSLHLLAEKFYVSPYYLSRFFKEATGFTFVEY 222 Query: 184 LLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 L + R+ A++LLE + ++ IA++ G+ S ++F F+ G P + + Sbjct: 223 LNSVRIKEAKKLLEQSSMKVNLIAKRVGFGSVTHFGRVFKSVTGYVPLHYRK 274 >UniRef50_UPI0001788C4E two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788C4E Length = 538 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 1/120 (0%) Query: 119 MFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-N 177 ++ + + + + + + + L+ IA + + S I +K + E Sbjct: 417 RLYAASRVLTQIHSKDNHIIHDIAQYLEQHYHDEISLQQIAGKFFLSREYISRKFKQEFG 476 Query: 178 TCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 S L R+ A+ LL QI + IAE GY YF F++ G TP+++ + Sbjct: 477 VTLSDFLGRIRIEKAKTLLLNPQIRIAQIAEMVGYQDEKYFSKVFKKMEGFTPNEYRKKH 536 >UniRef50_B5YFJ6 Transcriptional regulator, putative n=2 Tax=Dictyoglomus RepID=B5YFJ6_DICT6 Length = 287 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 36/242 (14%), Positives = 79/242 (32%), Gaps = 10/242 (4%) Query: 6 SVILIRRSF-DIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQN 64 ++ + R Y + + L+ L + + I Y + Sbjct: 45 EILYMERGIGKFYVDGYEYKLNEGEYLFVNSGSIHSGLEMIKRSIGYAIVFDLRLLYSEE 104 Query: 65 IRQLPRNLGLHSKDRLL-----INQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCL-S 118 L ++ +N + I + F E + L Sbjct: 105 PDYCKHEYFLPLINKRYHIPSNLNDEHIRNDICRIIEVFKEKSYGYELYIKSLLFDIFWR 164 Query: 119 MFSHKKELIPLLFNSISTV--SGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE 176 +F + E + V I+ + K L +++ ++ S+ + + ++ Sbjct: 165 VFKYYAERRNQDGRLGYKIERIKDVLNYINQNYNKNLSLDELSRQVDMSKFYLCRLFKES 224 Query: 177 -NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 + + R+ A LL + + IA +CG+ + SYFI F++Y TP +F + Sbjct: 225 LRMSPVEYINKVRVDKAMELLINTDMSVSEIAFECGFDNISYFIKVFKKYMHTTPLKFRK 284 Query: 236 HS 237 + Sbjct: 285 QN 286 >UniRef50_C0EDY4 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EDY4_9CLOT Length = 345 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 39/250 (15%), Positives = 87/250 (34%), Gaps = 18/250 (7%) Query: 6 SVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDI--DELTVCHYLQ 63 + + +F Q+I +S++LL S + +I + Sbjct: 90 MSYVYKGTFHNIIGGQQIDQPEDSLVLLSPQAKHRCFTRSSEDLVFNILIKRELIEKIFV 149 Query: 64 NIRQLPRNLGLHSKDRL-----------LINQSPPMPLVTAIFDSFNESGVNSPILSNML 112 + ++ D L + L+ +I + + + + Sbjct: 150 QMLSESESVCRFFLDSLYNVRQKQPYLFFSCDNALTELIHSIIEEYFQQQDFYQSIIQAK 209 Query: 113 YLSCLSMFSHKKELIPLLFNSIST---VSGKVERLISFDIAKRWYLRDIAERMYTSESLI 169 + S S + + ++ + ++E I + L IAE + S + Sbjct: 210 LIELFSKLSRLHQKNAEETPAETSNFQLILQIEDYIERHYST-VTLSSIAEHFNYTPSYL 268 Query: 170 KKKL-QDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGV 228 + + + N FS ++ R+ A R L +P+ + E GY+ S+F F+Q + V Sbjct: 269 SRLIQKQFNQKFSCLVQDIRLKHACRYLAHSSLPIDQVVEIVGYNDVSHFYRVFKQKHNV 328 Query: 229 TPHQFAQHSP 238 +P+Q+ + Sbjct: 329 SPNQYRKSHA 338 >UniRef50_B0PG61 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PG61_9FIRM Length = 533 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 2/129 (1%) Query: 109 SNMLYLSCLSMFSHKKELIPLLFNSIST-VSGKVERLISFDIAKRWYLRDIAERMYTSES 167 ++ ++ M S +++ T ++ I A L ++ + S S Sbjct: 402 ADDVWCCLRGMLSEAMQVLSEQKRQADTRPIRTAKQYIQEHYADPLTLEWVSNIVGFSGS 461 Query: 168 LIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYY 226 + E F + L RM+ A+ LL + + + + GYS YF +F++ Sbjct: 462 YFSSLFKKETGQNFLEYLSEVRMNRAKELLRETNLSVAEVCVRVGYSDLKYFTKSFKKAT 521 Query: 227 GVTPHQFAQ 235 G+ P +F + Sbjct: 522 GLKPGEFRK 530 >UniRef50_UPI0001788C0B transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788C0B Length = 288 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 36/242 (14%), Positives = 77/242 (31%), Gaps = 13/242 (5%) Query: 9 LIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFC---SPDTRRLDIDELTVCHY---- 61 L+ + + + + ++ +++N D L I+ Sbjct: 43 LLSGERIYFIKDRSYRVRAGDLVFVDRNAVHKTLDSGRPDHDRLVLYINPELFADLAVPP 102 Query: 62 -LQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMF 120 L + P + +V + + S L + L Sbjct: 103 ELAEGLKEPFGWDVPILRLPSPASEAVERMVGDMVNEMIHPQAGSSWLLRHRTVELLLFA 162 Query: 121 SHKKELIPLLFNSISTV----SGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE 176 + L + V + V R ++ + + L ++AE S + + + Sbjct: 163 YRSRHLGMVRSADTEPVLHPKTQAVVRYLNDNYRQALTLPEVAEAFRISPHYLSRLFKQT 222 Query: 177 -NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 FS L R+ A+RLL + IA + G+S+ S+F F++ ++P + Q Sbjct: 223 TGFTFSDYLNLLRVKEAQRLLRESDDSITDIAWRSGFSNFSHFGKMFKRTVQLSPRAYRQ 282 Query: 236 HS 237 Sbjct: 283 QY 284 >UniRef50_C0EGN7 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EGN7_9CLOT Length = 326 Score = 141 bits (357), Expect = 1e-32, Method: Composition-based stats. Identities = 37/245 (15%), Positives = 82/245 (33%), Gaps = 16/245 (6%) Query: 9 LIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDID-------------E 55 + R S + + I++ +LLL N A + +I Sbjct: 82 VYRGSCVNHFNENTITIQEGEMLLLNPNTAHCPETLTDQDCVFNIMFRQNFFQYSLDLLL 141 Query: 56 LTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLS 115 + + + + + + E ++ L + Sbjct: 142 KDNTLFSSFFMECMFQSSIARDYLFFLPGKASADTIERLIVECFEKQSCYETITQSLLVE 201 Query: 116 CLSMFSHK-KELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQ 174 + + N+ + K+ I A+ L+ ++E+ S + + + ++ Sbjct: 202 LFAYLARNSDNSFSYPKNNHERLILKIITYIQESPAE-ITLQKVSEQFQYSTAYLSRMIK 260 Query: 175 D-ENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 FS+I+ R++ A+ LE + + IA GY+ S+F F+Q G TP ++ Sbjct: 261 QYTGKNFSEIVRDCRLTKAKYYLESSSLSILDIALILGYNDVSHFYKVFKQEIGCTPTEY 320 Query: 234 AQHSP 238 +H Sbjct: 321 RKHYS 325 >UniRef50_C6J070 Two component transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J070_9BACL Length = 523 Score = 141 bits (357), Expect = 1e-32, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 63/200 (31%), Gaps = 11/200 (5%) Query: 38 ADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDS 97 D + + Y +R L L+ + P + + Sbjct: 330 QDKPEAAERFDLLFERLKGGRSDYFPRLRGDVIGLLLYLSRGVEAGDGP------ELIED 383 Query: 98 FNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRD 157 + + + + + L S S V + ++ + + Sbjct: 384 LSACEDTASLRER----ALHRLGGWIDGLRERKERSRSHVLQRALLFVNQRFKEEISMEQ 439 Query: 158 IAERMYTSESLIKKKLQ-DENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTS 216 AE + S K + FS L R+ A+RL+ R + L I + GY + Sbjct: 440 TAEYVNLSPYYFSKLFKLQTGENFSDYLTRLRIEEAKRLIAGRSLSLKEICYEVGYKDPN 499 Query: 217 YFINTFRQYYGVTPHQFAQH 236 YF F++ G+TP ++ Q Sbjct: 500 YFSRVFKKSVGITPSEYRQQ 519 >UniRef50_UPI0001B9ECE6 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001B9ECE6 Length = 519 Score = 141 bits (357), Expect = 1e-32, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 47/108 (43%), Gaps = 1/108 (0%) Query: 133 SISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSM 191 S ++ + I + + L+ +A+ ++ + + + + E + + + +++ Sbjct: 412 STTSPVQRAISFIHEHLGQSLSLQQVAKHVHMNPNYFSEMFKKETGQNYIEFVTQAKLRK 471 Query: 192 ARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPG 239 A LL + IA + GY YF F+++ G+TP ++ + Sbjct: 472 AMHLLRETPAKISEIANEIGYEDIKYFNRLFKKWTGLTPSEYRTNPES 519 >UniRef50_Q2BDI9 Two-component response regulator n=2 Tax=Firmicutes RepID=Q2BDI9_9BACI Length = 525 Score = 141 bits (357), Expect = 1e-32, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 58/165 (35%), Gaps = 7/165 (4%) Query: 80 LLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCL------SMFSHKKELIPLLFNS 133 + + LV+ + P LS+ + L + + + + Sbjct: 361 IRRSLQELFVLVSRMLYELGIDYRQVPELSDYHDSAVLFEQGKNHLLRIVRHVQAWRNSH 420 Query: 134 ISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMA 192 + K + I A+ L AE + S K +D F + R+ A Sbjct: 421 AKDMLYKAKEYIEAHYAEALTLESAAEYVDLSPFYFSKLFKDRFGMTFIDFVTDVRIRKA 480 Query: 193 RRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 + L+ + L I GY +YF F+++ G++P ++ + S Sbjct: 481 KHFLKEGSLSLKEICYSIGYKDPNYFSRVFKKHTGLSPTEYRKES 525 >UniRef50_C6IYL2 Two component transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IYL2_9BACL Length = 530 Score = 141 bits (357), Expect = 1e-32, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 1/107 (0%) Query: 131 FNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQ-DENTCFSKILLASRM 189 ++ ++ +I + L IAE+ + + S + + F + L RM Sbjct: 420 TREEPSIVEAMKEMIELNYMNDLNLSQIAEQYHYNLSYLSDLFKTKTGKSFLQYLTDVRM 479 Query: 190 SMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 + A +LL+ + L IAE G+S+ SYF F++ +G++P ++ Q Sbjct: 480 NKAVQLLDETPLSLSDIAELTGFSNASYFSTKFKKVFGISPSEYRQK 526 >UniRef50_C0FTY3 Putative uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FTY3_9FIRM Length = 250 Score = 141 bits (357), Expect = 1e-32, Method: Composition-based stats. Identities = 41/237 (17%), Positives = 85/237 (35%), Gaps = 10/237 (4%) Query: 9 LIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDI-----DELTVCHYLQ 63 IR + +K++ S+L + L SPD DI + L VC YL Sbjct: 12 YIREALKKLINWEKMNCDLVSVLEDGQELIQCIENESPDIVITDIQMPGVNGLEVCKYLY 71 Query: 64 NIRQLPR-NLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSH 122 R + + D + + + + L+ L Sbjct: 72 ETRPETQVIILTAYSDFDYAKFAIKYNACEYVLKISIMDELPEALEKATGKLTQLKKEIE 131 Query: 123 KKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQ-DENTCFS 181 K+E+ + T+ ++++ + + + L +IA+ ++ + S + + + Sbjct: 132 KEEIA---VSGQRTLLQQIDQYVEQNFKNKISLDEIADELHVNRSYLSRFYKNKTGINLF 188 Query: 182 KILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSP 238 +L R+ A+ L + + I+E G YF F++ GV+P +F + Sbjct: 189 DTILNLRIEAAKEYLLNTDMKTYEISEAIGVDDAGYFSKMFKKITGVSPKEFRKQGK 245 >UniRef50_C6IYS4 Response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IYS4_9BACL Length = 527 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 39/213 (18%), Positives = 75/213 (35%), Gaps = 8/213 (3%) Query: 28 ESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPP 87 SILL + +A + E T Y ++ + L Sbjct: 316 GSILLEQDRMALRAWTHRLADELVADPECTPESYQACLQSAAVAAHRWLERTLRALGKEG 375 Query: 88 MPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISF 147 F + + + L + L+ ++ S L ++ + + + Sbjct: 376 AAR----FAPWLQQHIGGAKLKDELFRHLHAVMSLYHG---QLGEGQASHVQRAKAYMES 428 Query: 148 DIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTI 206 A+ L+ +A ++ S + + + E + F + A RM A LL + + I Sbjct: 429 CPAEELSLQQVAAYVHLHPSHLSELFKKETGSTFGYYVTALRMRRAMELLAVSPAKVSEI 488 Query: 207 AEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPG 239 A GY YF F+++ G TP +F + +PG Sbjct: 489 AGLTGYEDVKYFSRLFKKHTGKTPSEFREEAPG 521 >UniRef50_A9KLS8 Transcriptional regulator, AraC family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KLS8_CLOPH Length = 277 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 36/243 (14%), Positives = 91/243 (37%), Gaps = 12/243 (4%) Query: 6 SVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCS---PDTRRLDIDELTVCHYL 62 L+ + + ++ ++L+E+ + S + + + + Sbjct: 31 MYYLLSGTRRFFVNDTLYNVSKGELILIEEGALHRTTYISGGSHERICITFSKSFLQPLF 90 Query: 63 QNI--------RQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYL 114 Q P S+ + D+++ +S + +L++ Sbjct: 91 QEFGEEAVLKCFSQPYVRIPQSRREYFEDLISKAHREMMYQDTYSLYLASSHVYELILFI 150 Query: 115 SCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQ 174 L+ S + ++ P + + K + I + L + A S + KK + Sbjct: 151 LRLNSISKQDDITPYDASPDDQIMEKAAKYICSNYQSPVTLEETAAYCNMSTTYFSKKFK 210 Query: 175 D-ENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 F + L++ R+ A RLL ++P+ IA G++ ++YF + F++ G++P ++ Sbjct: 211 AVTGFGFKEYLISIRIREASRLLLHTKLPITEIALLSGFNDSNYFGDVFKRMKGISPCKY 270 Query: 234 AQH 236 ++ Sbjct: 271 RKN 273 >UniRef50_A6NS86 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NS86_9BACE Length = 425 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 60/148 (40%), Gaps = 2/148 (1%) Query: 90 LVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDI 149 ++ F+ES L+L+ ++ + L+ + K + + Sbjct: 264 ILDMNSRCFSESDHLRTAEELALWLTRMTD-RFTDTVFSLVEVKHRDIICKAIEYLKRNC 322 Query: 150 AKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAE 208 R L D A + S S + ++E F+ L A R+S R +L + I + Sbjct: 323 RDRVTLEDTAGHVGLSPSYFSRVFKEEVGESFNSYLTALRISRGRAMLLDTDASIAEICD 382 Query: 209 KCGYSSTSYFINTFRQYYGVTPHQFAQH 236 +CG+ SYF FR+Y GVTP +F Sbjct: 383 RCGFDDQSYFTKVFRKYTGVTPGRFRAR 410 >UniRef50_C0CH60 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CH60_9FIRM Length = 278 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 78/237 (32%), Gaps = 8/237 (3%) Query: 7 VILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIR 66 ++ + + ++++ L + + + +L Sbjct: 45 FYVVSGEGKFLFRNETHHIKTGDLVIIPPYLEHTEQSVKGKSLEYYVIGIDKISFLAENG 104 Query: 67 QLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKEL 126 Q +QS + + S I+ L + + L Sbjct: 105 QTGIQAF-----CNFRDQSSVSDIFAQMLYEMRNDDYGSEIICQNLLEILILRIIRSQRL 159 Query: 127 IPLLFNSISTVSG--KVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKI 183 IP+ NS +++ + + +R L + + ++ + + Sbjct: 160 IPISINSERMTKECAQIKEYLDTNYTERITLDTLTSLTHMNKYYMAHSFAKYAGLSPIQY 219 Query: 184 LLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGT 240 L R+ +A LL + IA G+SS SYF +FR+YYG+TP Q+ Q + T Sbjct: 220 LNRRRLKIACTLLRDTDHSVSDIASSTGFSSQSYFTQSFRKYYGMTPLQYRQQNAET 276 >UniRef50_Q2BYZ8 Transcriptional regulator, AraC family protein n=6 Tax=Vibrionaceae RepID=Q2BYZ8_9GAMM Length = 293 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 51/236 (21%), Positives = 103/236 (43%), Gaps = 13/236 (5%) Query: 15 DIYHEQQKISLHNESILLLEK------NLADDFAFCSPDTRRLDIDELTVC---HYLQNI 65 D++ I L N S ++ K ++ + + + L IDE ++ Y+ + Sbjct: 33 DVHINGHAIELKNNSTFVVPKFSHISCSINQLNNQENIELQLLMIDEESITEAFKYISAL 92 Query: 66 RQLPRNLGLHSKDRLLINQ---SPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSH 122 +Q S + L + S S + +LS L +++ Sbjct: 93 KQPTFPTASCSPVYTIPTPAIVDQNFVLFNKLLPSICGSSMEKTLLSQCLVFILMALNEA 152 Query: 123 KKELIPLLFNSISTVSGK-VERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFS 181 ++ + + + + RLI+ D ++W + D+A+ ++T++S +++ L E FS Sbjct: 153 GIDVFNVYRFNYDEPKERTIARLITQDPQRKWSVDDMAKALFTTQSTLRRHLAKEGVSFS 212 Query: 182 KILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 ++LL RM +A L + I+ + G+ S +YF + F++ YG+TP QF S Sbjct: 213 QLLLDVRMGLALNYLTFSNYSISQISNRSGFGSAAYFCDAFKRKYGITPSQFRTTS 268 >UniRef50_B2I0Q2 AraC-type DNA-binding domain-containing protein n=4 Tax=Acinetobacter RepID=B2I0Q2_ACIBC Length = 270 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 86/230 (37%), Gaps = 6/230 (2%) Query: 7 VILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIR 66 +I++ F + + I S + L + + D + ++ Sbjct: 43 LIIVLSGFKELGKTENIKCVAGSFIFLANSSSIDMRNIPDQEEYFALLIEFD---FEDFN 99 Query: 67 QLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKEL 126 LP+N G + L +A+ + S V P L + + Sbjct: 100 DLPQNTGTSQN---YVQGQLNPLLESALHQFIDFSLVAPPSAFKFRKRELLELIYYSGYT 156 Query: 127 IPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLA 186 N ++S +V+ LIS+ ++ IA +++ S S +++KL+ E I Sbjct: 157 AIAKLNMNKSLSERVQTLISYHLSTELTAEFIAAQLFMSSSTLRRKLKSEGNSIQDIRNR 216 Query: 187 SRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 R+ L++ + IA +CGY S S F F+ +G+TP + + Sbjct: 217 VRLGHGLHLIQTTNNSIGNIAFECGYQSQSRFTEQFKNLFGITPRELRKT 266 >UniRef50_A8RTE5 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A8RTE5_9CLOT Length = 310 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 84/237 (35%), Gaps = 13/237 (5%) Query: 7 VILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDT-RRLDIDELTVCHYLQNI 65 +++ + D + ++ +L +++ N P+ L I + Y+ + Sbjct: 41 FLVLEGTLDFFINSRQYTLKPNDFVIVNPNEIHSIECPDPNITIVLQIPMKSFEGYMSDE 100 Query: 66 RQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNE-----SGVNSPILSNMLYLSCLSMF 120 ++ S+ L+ LVTA++ ++ + LYL Sbjct: 101 SRITFADKDESQKARLV------ALVTAMYRTYEKGEFGYRLKVKSQFMEFLYLIVTEFR 154 Query: 121 SHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTC 179 + + + + +V + + + K L +A R + S + ++ T Sbjct: 155 IEQIDKVRVQQKRHLDKLSQVTQYMKENYDKELSLEMVASRFGFTPSYLSHMFREYAQTG 214 Query: 180 FSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 + L+ R+ A R L + IA G++ F F++ YG P Q+ + Sbjct: 215 YRTYLMDLRVKYAMRELLNSDRYVGDIALDHGFADARAFAKAFKKRYGCLPSQYRKQ 271 >UniRef50_A9WH32 Sensor protein n=2 Tax=Chloroflexus RepID=A9WH32_CHLAA Length = 1202 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 39/196 (19%), Positives = 72/196 (36%), Gaps = 10/196 (5%) Query: 47 DTRRLDIDELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSP 106 D +++ T+ ++ ++L + R+L M L+ + G+ S Sbjct: 1015 DLMMPEMNGFTLLQMMREDQRLREIPVIVITGRML--SEEDMALLNQGVTTILSKGIFSA 1072 Query: 107 ILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSE 166 + + L E L + + K I +DIA + SE Sbjct: 1073 DETLAHLQAAL-------ERRRRLSDQAQMLVRKAMAYIHSHYTHPLTRQDIAHYVGMSE 1125 Query: 167 SLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQY 225 + + E T + L R+ AR LL + IA + G+SS+SYF FR+ Sbjct: 1126 DYLTHCFRQELGTTPVEYLNRYRVLQARHLLAESDKSITNIALEVGFSSSSYFSRVFRKE 1185 Query: 226 YGVTPHQFAQHSPGTF 241 G +P ++ + + Sbjct: 1186 VGQSPEEYRRLKQSSV 1201 >UniRef50_C6CTP9 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CTP9_PAESJ Length = 537 Score = 141 bits (355), Expect = 2e-32, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 83/223 (37%), Gaps = 19/223 (8%) Query: 29 SILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPM 88 S+ + A S + ++ V +L+N R LP + +S Sbjct: 317 SLSIAAYEERFRLAVWSGKEKDIETA---VDSFLENARLLPVITQEQIELWRFEYESMLS 373 Query: 89 PLVTAIFDSFNESGVNSPILSNMLYLSC-----LSMFSHKKELIPLLF----------NS 133 + P LY+ LS+ ++EL+ L N Sbjct: 374 RWRQELAAKQGIQAGAEPSSGLPLYVLLDEQGRLSLELCRRELLNGLTAFAALTGAGGNK 433 Query: 134 ISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMA 192 ++ + R + + + L+DI+ER Y S I ++ + E L R+ A Sbjct: 434 EHSIMRDIARYMEQNYNREVTLQDISERFYLSREYISRRFKQEMGENVFDYLGRIRVEKA 493 Query: 193 RRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 + LL+ + + IAE GY YF F+++ G +P+Q+ + Sbjct: 494 KLLLQNPNLKIAQIAEMVGYDDDKYFSKVFKKFEGQSPNQYRK 536 >UniRef50_A8RIS8 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RIS8_9CLOT Length = 285 Score = 141 bits (355), Expect = 2e-32, Method: Composition-based stats. Identities = 36/244 (14%), Positives = 81/244 (33%), Gaps = 15/244 (6%) Query: 9 LIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFC---SPDTRRLDIDELTVCHYLQNI 65 L+ + +++ + S++ +++N + S + + +D+ +L Sbjct: 40 LLEGQRYYFIDRRTYHVTGGSLVFIDRNQIHQTSQAGPGSHERILISLDQNPFSDFLAFT 99 Query: 66 RQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMF----- 120 ++ +L L + D + + +S LS Sbjct: 100 GEMSLEGFFRRNSGILNLDKEGQNLAEYLLDGAAKELHEKKPGFRHITMSKLSQLFILAQ 159 Query: 121 ------SHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQ 174 S +PL +V I K L IA Y ++ + + + Sbjct: 160 RHMSGPSSLSADLPLSTQPKHRKVDEVASYIIDHYDKALSLEIIAAHFYVNKCYLSRIFK 219 Query: 175 D-ENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 + ++ + R+ AR LL + + ++E GY + +YF F QY +P + Sbjct: 220 EASGFTVNEYINMIRIRRARELLSNTSMSITEVSESVGYETITYFERVFHQYTQTSPSGY 279 Query: 234 AQHS 237 + Sbjct: 280 RKQY 283 >UniRef50_C6D5X4 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D5X4_PAESJ Length = 533 Score = 141 bits (355), Expect = 2e-32, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 59/140 (42%), Gaps = 1/140 (0%) Query: 96 DSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYL 155 + ++ V L + + S+ L S + + +S ++ KR L Sbjct: 393 EKLHKEIVYFDSLWGLFEWFHTQLQSYIAAREEALPVSKRREVSEARKYVSMNLGKRISL 452 Query: 156 RDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSS 214 ++A ++ + S + + E F + + ++ A+ LL+ + I E GY + Sbjct: 453 EEVAAHLHMNPSYFSRFFKKETGLTFIEYVTDQKIERAKELLDQTNYYVSEICEMLGYDN 512 Query: 215 TSYFINTFRQYYGVTPHQFA 234 SYFI TF+ G+TP ++ Sbjct: 513 QSYFIKTFKAQTGLTPTEYR 532 >UniRef50_B0ABU8 Putative uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0ABU8_9CLOT Length = 412 Score = 141 bits (355), Expect = 2e-32, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 58/159 (36%), Gaps = 1/159 (0%) Query: 79 RLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVS 138 R I+ + + F N + ++ Y + S + + + + Sbjct: 253 RASIDGGADSNTIIDLNSKFLYKISNIKNIEDLSYWVIHMLDSFTQNVFNFNESKNPVLI 312 Query: 139 GKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLE 197 K I+ + L IA ++ + S + E FS L R+ ++ LL+ Sbjct: 313 QKCISYINEHYNEDINLETIANIVHLNPSYFSSIFKKEVGVSFSNYLNKIRIEQSKLLLK 372 Query: 198 LRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 + IA + G+ SYF F+ +TP Q+ Q+ Sbjct: 373 NTDSSIVEIALEVGFEDQSYFSKVFKNLTKMTPKQYRQN 411 >UniRef50_C4FUL3 Putative uncharacterized protein n=2 Tax=Catonella morbi ATCC 51271 RepID=C4FUL3_9FIRM Length = 277 Score = 141 bits (355), Expect = 2e-32, Method: Composition-based stats. Identities = 36/237 (15%), Positives = 83/237 (35%), Gaps = 10/237 (4%) Query: 6 SVILIRRSFDIYHEQQKISLHNESILLLEKNLADDF---AFCSPDTRRLDIDELTVCHYL 62 ++ R SF + I L L+ N + ++ + L +++ Sbjct: 45 YILSGRGSFLENERHEAIQLGPGQGFLMPPNTVCSYTADQDDPWTYCWIEFNGLKAANFM 104 Query: 63 QNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSH 122 + L N + + + +I + + + L LYL + Sbjct: 105 RQ-AGLNANNLIFTPHKPMI----ISSIKDTLETIIRNHSQHESFLIAQLYLLVDHLIRF 159 Query: 123 KKELIPLLFNSISTV-SGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCF 180 K N I + + I + +A+ + + + + + E + Sbjct: 160 SKHSPQQRPNEIHSFYIREAIHYIQDHYMDNPSVDQLADICHLNRNYFTRLFKQELHMTP 219 Query: 181 SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 S+ +L R++ + LL + IA++ GYS+ F + F++ G+TP ++ + Sbjct: 220 SQFILTYRINQSCELLASTNRSIRDIADQIGYSNQFNFSSAFKRVKGMTPMEWRRRY 276 >UniRef50_C0E8H9 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E8H9_9CLOT Length = 358 Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats. Identities = 39/246 (15%), Positives = 87/246 (35%), Gaps = 18/246 (7%) Query: 14 FDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDID--ELTVCHYLQNIRQLPRN 71 + + +I + S++LL +PD +I + V + L N+ + Sbjct: 111 INEFPNHDRIEIDESSLILLNPYAVHLPYTQTPDDIVFNILLRKSFVENKLVNMISDNKI 170 Query: 72 LGLHSKDRL-----------LINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMF 120 D + N L+ ++ + + + N ++ ++ Sbjct: 171 FFNFFLDSIYGNEHITNFLVFKNNQEVSNLILSLIMELCDRQLYFEQVVNSYLVALFAIL 230 Query: 121 SHKKELI---PLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDEN 177 + + + + + I ++ + L ++AE S + + ++ E Sbjct: 231 VRIHQQEFSEAMDGLAKNRTIADILSYIRYNYSH-VSLAEVAEHFNYSIGYMSRLIKQET 289 Query: 178 -TCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 FS+I+ R+ +A L+ I I E GYS TSYF F++ G +P + + Sbjct: 290 SMSFSEIVSNYRLEIACNYLKNSNISTEKITEIIGYSDTSYFYKAFKKQQGFSPIDYRKR 349 Query: 237 SPGTFS 242 + Sbjct: 350 FQKNLA 355 >UniRef50_B0NDZ7 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NDZ7_EUBSP Length = 515 Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats. Identities = 35/228 (15%), Positives = 89/228 (39%), Gaps = 8/228 (3%) Query: 14 FDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRL--DIDELTVCHYLQNIRQLPRN 71 F E + L E+ L + F D ++ +I +++ +I Sbjct: 283 FSDCVESSEYDLTAENTFDLFEFENHLFNRLFEDAEQVLKNIFSKFKSNFVSSIETKNIC 342 Query: 72 LGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLF 131 ++ ++ + +P + + + + +L + +F + K Sbjct: 343 FQIYYICYRVLKKREAIPPSSELLARIHSAPDIF-----ILENTVNELFQYTKNQFNGSN 397 Query: 132 NSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMS 190 + + + + I ++A L IAE ++ S S + + + + ++ + +R+ Sbjct: 398 GTQNRIIENTIKFIHQNLATALSLEVIAEHLHISASHLSRTFKKYCDESLTEYVNKTRIE 457 Query: 191 MARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSP 238 A+ L+ + + IA + GY+ +YF + F++Y G +P ++ Q Sbjct: 458 KAKEYLKDSNMLTYEIANQVGYNDATYFSSIFKKYTGFSPSEYRQKYA 505 >UniRef50_B3EYL7 Two-component response regulator n=5 Tax=Firmicutes RepID=B3EYL7_BACST Length = 404 Score = 140 bits (354), Expect = 3e-32, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 2/108 (1%) Query: 131 FNSISTVSGKVERLISFDIAK-RWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASR 188 + +S + + + I ++ L +AE + S + + ++ E F +L R Sbjct: 289 ESRLSPIVRRARQYIQKHFSQSDLTLESVAEFLNVSPVYLSRMIKQELGISFIHLLTKIR 348 Query: 189 MSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 M A LL ++P+H IAE+ GY + YF F++ GV+P+Q+ + Sbjct: 349 MEKAAELLLSTELPIHEIAERVGYDTQHYFSTAFKKAMGVSPNQYRRT 396 >UniRef50_B5XY24 Transcriptional regulator, AraC family n=3 Tax=Klebsiella RepID=B5XY24_KLEP3 Length = 277 Score = 140 bits (354), Expect = 3e-32, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 66/150 (44%), Gaps = 2/150 (1%) Query: 92 TAIFDSFNESGVNS-PILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIA 150 + + S NE + P+ + ++ + LS + + + + + V+ + +++ Sbjct: 124 SYLLLSLNEVSLQPDPLTARLVVAALLSHCREQLVGLEMRVSRSRDLFLAVQDYLEENLS 183 Query: 151 KRWYLRDIAERMYTSESLIKKKLQDEN-TCFSKILLASRMSMARRLLELRQIPLHTIAEK 209 +A+R + + + + Q F++ L R+ A++LL + + IA Sbjct: 184 LPLTRESVAKRFHITPNYLSHIFQKSGSVGFNEYLTRVRLEKAKQLLRGYDLKVKEIAHN 243 Query: 210 CGYSSTSYFINTFRQYYGVTPHQFAQHSPG 239 CG+ ++YF F++Y +P ++ +H Sbjct: 244 CGFVDSNYFCRVFKRYTERSPSEYRRHCRS 273 >UniRef50_A7AA81 Putative uncharacterized protein n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7AA81_9PORP Length = 287 Score = 140 bits (354), Expect = 3e-32, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 89/230 (38%), Gaps = 8/230 (3%) Query: 11 RRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELT--VCHYLQNIRQL 68 + + ++ E + IS ++++ N+ F S DT + ++ L + + Sbjct: 55 KGNCILHLENESISFSENEMMVICSNVEHTFEAGSEDTTLMQLEFLPEVFSRFNPDGHGQ 114 Query: 69 PRNLG---LHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNM--LYLSCLSMFSHK 123 ++L + S++ LI + ++ A+ NE S + +Y + L + ++ Sbjct: 115 MKDLAPVTIFSEENRLIKIVNNVRIMRAVQRIVNEMNQKSKYYQYLVVMYYAELLILIYR 174 Query: 124 KELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSK 182 L + K I + + D+A + E ++K N Sbjct: 175 YLDEAYLPICTNDSLKKAISYIRLNYQSDITISDVASQTGVGERYLRKLFSQYLNLSPLD 234 Query: 183 ILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQ 232 L R++ A LL ++ + + CG+ S YF F+Q G++P + Sbjct: 235 YLNQIRINKAIELLRNTEMSVKEVCFACGFQSPQYFSRIFKQQMGISPRE 284 >UniRef50_B0MM97 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MM97_9FIRM Length = 283 Score = 140 bits (353), Expect = 4e-32, Method: Composition-based stats. Identities = 41/253 (16%), Positives = 80/253 (31%), Gaps = 17/253 (6%) Query: 2 THVCSVI-LIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCH 60 C +I +I + ++ +L+L+ + + + Sbjct: 35 PDFCVLIYVIDGCIYVTEGDTDYEVNAGELLILKNGVHHFGKKKIQKGTKWIFVHFRISA 94 Query: 61 ------YLQNIRQLPRNLGLHSKDRLLINQSPPM-----PLVTAIFDSFNESGVNSPILS 109 + + L L + + + Sbjct: 95 DCNASPFYPDASPLGAYDATAESILTLPKFLDSVSARFEKELKTFIEYAQSDDAYKKWFI 154 Query: 110 NMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLI 169 N LS + + F++ T+S ++ R +S +I + +I +R Y S + Sbjct: 155 NQRLFLLLSSLA----VNTQGFSNNLTLSDRICRYLSDNIGVPFSSENIEKRFYLSYKYM 210 Query: 170 KKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGV 228 + E + + RM A RLL + + IA+K G+S YF FR Y G Sbjct: 211 SHLFKKEKGVTMQQYHNSVRMDEACRLLCSTLMSIGEIADKLGFSDVLYFSRCFRNYTGK 270 Query: 229 TPHQFAQHSPGTF 241 +P + + S F Sbjct: 271 SPSAYRKDSARYF 283 >UniRef50_C6D710 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D710_PAESJ Length = 289 Score = 140 bits (353), Expect = 4e-32, Method: Composition-based stats. Identities = 38/242 (15%), Positives = 89/242 (36%), Gaps = 15/242 (6%) Query: 7 VILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCS---PDTRRLDIDELTVCHYLQ 63 L + + + ++L+ N + S + L D + Sbjct: 44 FYLYSGERKFFIRDSVYQIQSGDLILVNTNDVHRTSELSQPNHERIVLHYDLPFFDGLSR 103 Query: 64 NIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSP---------ILSNMLYL 114 +L + + + +N M L A+F+S P + + +L Sbjct: 104 EETELLLSPFASAHPIIKLNLQERMHL-EALFESLLRELQECPPGYQLHVRNMATEILLF 162 Query: 115 SCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQ 174 + K L V+ + R I+ + L ++A++ + S+ + + + Sbjct: 163 TARHALKRKSLPSIELTPVQQKVTD-IIRHINQHFREPLPLDELAKQFFISKGHLSRVFK 221 Query: 175 D-ENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 + FS+ + +R+ A LL+ + I+E+CG+ + S+F F++ G++P + Sbjct: 222 EVTGFGFSQYINVTRIKEAELLLKETDWSITQISERCGFENFSHFGKVFKELSGLSPRDY 281 Query: 234 AQ 235 + Sbjct: 282 RK 283 >UniRef50_C6CWB0 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CWB0_PAESJ Length = 530 Score = 140 bits (353), Expect = 5e-32, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 64/148 (43%), Gaps = 1/148 (0%) Query: 89 PLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFD 148 PL + + + P +++ + K + +V+ ++ +LI+ Sbjct: 380 PLRDQLLADHWKELSSLPTIAHYHAYALRFCRELLKAAAERDLDRHQSVAEQIMKLIAER 439 Query: 149 IAKRWYLRDIAERMYTSESLIKKKLQ-DENTCFSKILLASRMSMARRLLELRQIPLHTIA 207 + DIA+ +Y S + ++ + L RM+ A LL+ R + + IA Sbjct: 440 YHLPLTVEDIAKEVYLSPNYVRTIFKEKTGETILDYLTRIRMNHAAELLKDRALKVRDIA 499 Query: 208 EKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 + Y + SYF + F+++ G TP+++ + Sbjct: 500 HRVSYENVSYFCSVFQKHKGSTPNEYRK 527 >UniRef50_C4L9U6 Transcriptional regulator, AraC family n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L9U6_TOLAT Length = 284 Score = 140 bits (353), Expect = 5e-32, Method: Composition-based stats. Identities = 34/214 (15%), Positives = 77/214 (35%), Gaps = 3/214 (1%) Query: 24 SLHNESILLLEKNLADDFAFCSPD-TRRLDIDELTVCHYLQNIRQLPRNLGLHSKDRLLI 82 L L + N + + L + L + Q +N K + Sbjct: 68 RLTTGQFLFVPANCWNKPVWQEDVCVLSLLFGRRQLGLSLVSWSQQQQNFIDVQKHSYPL 127 Query: 83 NQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHK-KELIPLLFNSISTVSGKV 141 + P+ + S + +P + ++ L+ + P + +V ++ Sbjct: 128 SAKSPVHSMLQALIDLQASELQTPRSLQLQLMTVLTFTQELLHQPQPEKYQRAQSVFQRI 187 Query: 142 ERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDEN-TCFSKILLASRMSMARRLLELRQ 200 + + K +A R S + + + + + F+ ++ R+ A+ +L Sbjct: 188 CIYVQENFHKAISRETVARRFNISPNHLSRLFRQQGHMNFADYMVYVRIDRAKFMLRRYP 247 Query: 201 IPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFA 234 + L IA +CG+ T+YF F++ G TP ++ Sbjct: 248 MHLEEIAHRCGFRDTNYFCRVFKKKTGRTPTEYR 281 >UniRef50_C6CVC0 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CVC0_PAESJ Length = 539 Score = 140 bits (352), Expect = 5e-32, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 1/124 (0%) Query: 118 SMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE- 176 S+F + I + I+ A+ L+DIA+ ++ S + I + + E Sbjct: 416 SVFHQIMDRISARRPQYGEAVERACEYITLHYAEDLMLQDIADHVHLSRTYISELFKKET 475 Query: 177 NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 +++ L+ RM A+ LL+ + + + A GYS+TSYFI F+ Y G++P ++ + Sbjct: 476 GMNYNEYLMQVRMEKAKELLKRQTLKVADAAALVGYSNTSYFIKLFKNYTGLSPSEYMEQ 535 Query: 237 SPGT 240 Sbjct: 536 QRSV 539 >UniRef50_C4Z0X2 Two-component system, response regulator YesN n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z0X2_EUBE2 Length = 249 Score = 140 bits (352), Expect = 5e-32, Method: Composition-based stats. Identities = 39/244 (15%), Positives = 96/244 (39%), Gaps = 15/244 (6%) Query: 9 LIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQL 68 ++ + I + + +L +I+ + N ++ E + Y++ I Q Sbjct: 1 MMHGNCTISIDNRLFTLSEGNIIFIPANSVHRTSYIGELVPERTYIEFS-KDYIETISQT 59 Query: 69 PRNLGLHSK--DRLLINQSPPMPLVTAIFDSFNESGVNSPILS--------NMLYLSCLS 118 +L + + +F + S L ++ + Sbjct: 60 LGKNWAEHNLWGHILYIEKEKREKIDFLFREIQKEYDIVDGYSDCCIRQLFQYLIINLIR 119 Query: 119 MFSHKKELIPLLFNSISTVSGKVE---RLISFDIAKRWYLRDIAERMYTSESLIKKKLQD 175 + + K++ + NS + ++ + + I+ + L+D+A + + S K + Sbjct: 120 LDRNTKDIKEFITNSDNKINQNMIIAAKYIAENFKNDITLKDVASHLNLNPSYFSSKFKA 179 Query: 176 EN-TCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFA 234 N F++ L R++ A L + L IA +CG+ +++YF +TF+ G++P +F Sbjct: 180 FNNIGFAEYLRNIRVNHAEWYLIETDLSLSDIASECGFCNSNYFGDTFKLVNGISPSEFR 239 Query: 235 QHSP 238 +++ Sbjct: 240 KNNK 243 >UniRef50_C7G755 Transcriptional regulator, AraC family n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G755_9FIRM Length = 302 Score = 140 bits (352), Expect = 5e-32, Method: Composition-based stats. Identities = 35/242 (14%), Positives = 88/242 (36%), Gaps = 12/242 (4%) Query: 6 SVILIRRSF-DIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDID-ELTVCHYLQ 63 +I ++ + + ++ + L + Sbjct: 54 EIIYVKSGLLTVSISGESYIGKAGDAFVVSPGNLHLMGSQTGTVDYFTFLFPLKYISFRT 113 Query: 64 NIRQLPRNLGLHSKDRLLIN---QSPPMPLVTAIFDSFNESGVNSP------ILSNMLYL 114 + + L + L+IN + L + D + + I + ++ L Sbjct: 114 DDMLDDKLLEPLNSGHLMINPRVKDSAKELCEQLIDIYMAENDETESKITAQIKTKIILL 173 Query: 115 SCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQ 174 + K +I + + V ++ I + + L++ E+ + SE I + + Sbjct: 174 QFILEMWKKGFVIENDTSGRNIVEKEMVSYIQQNFTGKISLKEFGEQFHLSEKYISRYFK 233 Query: 175 DE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 + + S+ + R+ A++LL+ + + A + GY + SYFI +F++ YG++P ++ Sbjct: 234 EHFHITLSQYITYLRLENAKQLLQDTDLSVTETAMQSGYQNVSYFIRSFKKAYGISPLKY 293 Query: 234 AQ 235 Sbjct: 294 RN 295 >UniRef50_C0EAY1 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EAY1_9CLOT Length = 329 Score = 140 bits (352), Expect = 5e-32, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 93/248 (37%), Gaps = 19/248 (7%) Query: 6 SVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDID--ELTVCHYLQ 63 + + + + + +LH ILLL N+ + +I + YL Sbjct: 79 MIYVYQGELENEMPANRCTLHQGDILLLNPNVWHNVYRNDEKDIAFNIAIPKELFQTYLS 138 Query: 64 NIRQLPRNLGLHSKDRLLINQSPPMPLVTA--------------IFDSFNESGVNSPILS 109 NI + + D L + L + + F++ + + Sbjct: 139 NILEDNQMFSFFFSDYLYRDPKSERYLYFQNSGDPWVREPVERMVREYFSKQPNWNSMTL 198 Query: 110 NML--YLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSES 167 L S LS ++ I N + + ++ ++ + L +AE + S Sbjct: 199 ACLIALFSQLSRTHQEESKIAAYENDRNRIVYEMVAYVNAH-MQDVTLNQMAEHLKYSPG 257 Query: 168 LIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYG 227 + K L+ FS++LL RM+ A LE +P+ I E+ GY++ +F FRQ + Sbjct: 258 HLSKLLRKSGKNFSQLLLECRMNKAGYYLEHTNLPISEIIERIGYTNEFHFYKLFRQSFH 317 Query: 228 VTPHQFAQ 235 TP ++ + Sbjct: 318 TTPTEYRK 325 >UniRef50_Q7NTA1 Putative uncharacterized protein n=1 Tax=Chromobacterium violaceum RepID=Q7NTA1_CHRVO Length = 266 Score = 140 bits (352), Expect = 5e-32, Method: Composition-based stats. Identities = 54/239 (22%), Positives = 93/239 (38%), Gaps = 7/239 (2%) Query: 1 MTHVCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCH 60 M +C V I +++S ++LL D L Sbjct: 31 MPALCRVR--HGGKRIRLGDREMSAGPSQLVLLPAGCELDIVNLPGPGGYLADVVGLPPD 88 Query: 61 YLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTA---IFDSFNESGVNSPILSNMLYLSCL 117 L R L L + + + PL +A + DS + G +P + L Sbjct: 89 LLDRFRDRHGPLLLRQRPGQELCPTMDGPLASAWTLLMDSLH--GNAAPEIRQHHAEGVL 146 Query: 118 SMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDEN 177 + + PLL +++ + +L+ D A W + A R+ S ++++L +E+ Sbjct: 147 LALALAGQAGPLLREKTDSLTQGLRQLMMLDPAAPWSVETAARRLNLGASTLRRRLAEED 206 Query: 178 TCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 F IL RM +A + ++ + + IAE GY+S S F FRQ YG+TP + Sbjct: 207 AGFQAILEEVRMGLALQQVQDGRRSIAQIAEASGYASASRFAARFRQRYGLTPSALRRT 265 >UniRef50_Q5WIX4 AraC/XylS family transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WIX4_BACSK Length = 765 Score = 140 bits (352), Expect = 5e-32, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 73/201 (36%), Gaps = 11/201 (5%) Query: 39 DDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSF 98 A S L ++ L + QL + GL +L+ + + Sbjct: 573 HLLAEVSEGAHHLGEVRVSFMRLLNRMLQLYQQSGLRHDQGVLLPEGTLYQECL----TI 628 Query: 99 NESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDI 158 + L LS F E + +S K+ I + L Sbjct: 629 PSQEQMKNWFVSRLIDPLLSAFKQVSE------SQFQHLSEKMIDYIHQHYHQAVTLEQC 682 Query: 159 AERMYTSESLIKKKLQD-ENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSY 217 A ++ + + + ++ FS+ L R+ A+ L P+ TIAEK GY+++ Sbjct: 683 AADLHYNANYLSSVFKEGTAMTFSEYLAQYRLKKAKEWLAKTSEPVKTIAEKLGYNNSQN 742 Query: 218 FINTFRQYYGVTPHQFAQHSP 238 FI +F++ G+TP Q+ Q Sbjct: 743 FIRSFKKMTGMTPGQYRQQKQ 763 >UniRef50_B5ZYE2 Transcriptional regulator, AraC family n=12 Tax=Rhizobium RepID=B5ZYE2_RHILW Length = 284 Score = 140 bits (352), Expect = 5e-32, Method: Composition-based stats. Identities = 46/220 (20%), Positives = 81/220 (36%), Gaps = 1/220 (0%) Query: 16 IYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRNLGLH 75 I + + L + LL R L V L Sbjct: 42 IMANDRPLRLEAGAYGLLPDYQPLTMENIPKAPRNYQTVALPVPRQLFEDAYARMGSIAV 101 Query: 76 SKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSIS 135 L + S +FD + G + + + + + + +L S Sbjct: 102 PSRPLPASASSLPEEAAVLFDYCCQPGNLARLPGAIAKARLMELVTWFALCGAVLGEGQS 161 Query: 136 -TVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARR 194 + ++ ++I D A W L A SE+ ++++L ENT FS+IL +RM+ A Sbjct: 162 PRLEDRLRQMIESDPAFDWTLAHAARSFNMSEATLRRRLAAENTGFSEILSDTRMNRALG 221 Query: 195 LLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFA 234 L+ +P+ +A + GY S S F F++ +GV+P Sbjct: 222 LIHTTTLPMAQVALEVGYDSPSQFSARFKERFGVSPRHVR 261 >UniRef50_UPI0001BC2F1F 2-isopropylmalate synthase n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC2F1F Length = 288 Score = 140 bits (352), Expect = 6e-32, Method: Composition-based stats. Identities = 42/247 (17%), Positives = 92/247 (37%), Gaps = 11/247 (4%) Query: 6 SVILIR-RSFDIYHEQQKISLHNESILLLEKNLADDFAFC--SPDTRRLDIDELTVCHYL 62 +I IR S +I + + + S ++ + D + + Sbjct: 41 EIIYIRNGSINITIDNELFTGTGGSFFIVNPGELHYMGSNDLNADYYTILFPLEFISFQS 100 Query: 63 QNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILS-------NMLYLS 115 + + + S +L + P + I + + +L L Sbjct: 101 NDYVENMLFKPMRSSHVILTHSLPYSEIYAEIISLLEKLIYINKYEKGFYQLDCKILLLE 160 Query: 116 CLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD 175 LS +++ ++ S + ++ ++ + ++ L D+A+ + SE I + + Sbjct: 161 ILSNILSIPDILVKKTSNASDMRREIITYVNDNYLEKITLSDLADEFHMSEKYISRYFKK 220 Query: 176 E-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFA 234 N FSK + R+ A+ LL+ I + +A G+ + SYFI +F++ YG TP + Sbjct: 221 HFNITFSKYVNHMRLLYAKNLLDTTNISITDVALSSGFPNVSYFIRSFKESYGKTPFSYR 280 Query: 235 QHSPGTF 241 + Sbjct: 281 TDNISVD 287 >UniRef50_C6D8V3 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D8V3_PAESJ Length = 309 Score = 140 bits (352), Expect = 6e-32, Method: Composition-based stats. Identities = 36/251 (14%), Positives = 87/251 (34%), Gaps = 18/251 (7%) Query: 9 LIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPD---TRRLDIDELTVCHYLQNI 65 +I + + + I++ +++L+ + S ++ ++ Sbjct: 47 VISGNCTVETNKDVIAMRKGDLIMLDAGVPHRLIVESGSPCRMLNVEFGFQPCDGIYPSM 106 Query: 66 RQL------PRNLGLHSKDRLLINQSPPMPL-VTAIFDSFNE----SGVNSPILSNMLYL 114 QL L D +++ + + + + + +++N+L Sbjct: 107 NQLANHNPMFSKLLEQRLDTIVLRDYEDIQVNLRNLVFELDLGGEGKEQGREMMTNLLMS 166 Query: 115 SCLSMFSH--KKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKK 172 L E I + I +DIA + +++ Sbjct: 167 QLLVRVGRLVAVEAKNSTERQIHHYVRQATEYIHQYYDTAIQAKDIAAAVNLHPVYLQRI 226 Query: 173 LQ-DENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPH 231 + + N ++ L+ RM A+ LL +P+ +A+ G +S YF F++ G++P Sbjct: 227 FKSNMNKTINEYLVDLRMDKAKMLLARTDVPIIEVADHIGLNSRQYFSMLFKKMTGISPA 286 Query: 232 QFAQHSPGTFS 242 ++ + S T S Sbjct: 287 EYRK-SKNTIS 296 >UniRef50_B8FMW7 Transcriptional regulator, AraC family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FMW7_DESAA Length = 342 Score = 139 bits (351), Expect = 6e-32, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 65/156 (41%), Gaps = 2/156 (1%) Query: 82 INQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKV 141 I Q P + ++++ +N+P+ ++ + L T S ++ Sbjct: 189 IFQCPIVFNAPRHMFVWDKTNLNTPLPLANPLAKKAHEKECRE--LSLRIRKQETASSRI 246 Query: 142 ERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQI 201 + I F D+A M S ++++L++E T F I+ + A LL+ + Sbjct: 247 VQEIEFRRQGVPGFDDLARHMNMSPRTLRRRLKEEGTSFKNIVSDVQKEKAIHLLQTTNL 306 Query: 202 PLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 P+ IA + GY F F+++ G TP + Q + Sbjct: 307 PIQQIALELGYEDLPNFYRAFKRWTGKTPGDYRQSN 342 >UniRef50_C5EQL5 Transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EQL5_9FIRM Length = 290 Score = 139 bits (351), Expect = 7e-32, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 77/235 (32%), Gaps = 8/235 (3%) Query: 9 LIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSP---DTRRLDIDELTVCHYLQNI 65 L+ ++ +Q L +++ + + + + + + Sbjct: 48 LLSGQCRMFIDQDIYYLKPGDAVIIPPLQIHRALYEEGLQAERYDMYFTKEEADAFHASC 107 Query: 66 --RQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHK 123 R + L++ + + S + L L + Sbjct: 108 GREGFERVFLNPRIAIPQPLRPGIEGLLSHLSHENGQEDAYSHVQQQSLLFQILVLIGRC 167 Query: 124 KELIPLLFNSISTVSGKVE--RLISFDIAKRWYLRDIAERMYTSESLIKKKLQD-ENTCF 180 ++ + + + V+ R I+ + L +A S + +K + CF Sbjct: 168 QDTQQEKDSLNDSEAAIVKAARYINLQYREHLTLDAMAAMSNMSPTYFSRKFRASTGFCF 227 Query: 181 SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 + + R+ A LL + +IA CG+S +YF + F++ G++P ++ Sbjct: 228 KEYVNYIRVQKASDLLRNTDGTVTSIAIACGFSDGNYFGDVFKKLTGLSPREYRN 282 >UniRef50_A4XHB8 Two component transcriptional regulator, AraC family n=2 Tax=Clostridia RepID=A4XHB8_CALS8 Length = 546 Score = 139 bits (351), Expect = 7e-32, Method: Composition-based stats. Identities = 36/223 (16%), Positives = 83/223 (37%), Gaps = 3/223 (1%) Query: 16 IYHEQQKISLHNESIL-LLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRNLGL 74 +Y + +K+ I+ + + + Y+ N+ L Sbjct: 313 VYVDDKKLKYLKNEIISNVRYGNISNIDILLSELEETLKKSKADKQYIFNLYYLMLIEIN 372 Query: 75 HSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSI 134 K ++L + S F + +S + + +S+ +E+ + + Sbjct: 373 MIKAQVLSSSSQYEQEDKLQDIEFLSEILKCKSISELNGVLKMSIQKTIEEVQKHNQSKM 432 Query: 135 STVSGKVERLISFDIA-KRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMA 192 ++ KV I + + L +I+E+ + S S + + + E S + R+ A Sbjct: 433 GSLIKKVIEYIKANYSYNEISLSEISEKFFVSPSYLSRLFKKETGKNLSDFINEYRIEKA 492 Query: 193 RRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 + LL + + +A+K G YF F++Y G +P ++ + Sbjct: 493 KELLATTDLKTYEVADKVGIPDPHYFSRIFKRYTGYSPSEYKE 535 >UniRef50_C6D3S3 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D3S3_PAESJ Length = 538 Score = 139 bits (351), Expect = 7e-32, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 1/110 (0%) Query: 131 FNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRM 189 +V + + I +A+ DIA +Y + + + + E S LL R+ Sbjct: 421 LEHSPSVVEQAKTYIHQHLAEEISREDIASHVYLNPDYLTRIFKRETGMSISDYLLQQRL 480 Query: 190 SMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPG 239 +A LL + + +A + GY++ S+F F++Y G+ P ++ Q Sbjct: 481 RIAAELLANTDLAVSAVASRIGYANFSHFSRIFKKYMGINPLEYRQSQES 530 >UniRef50_B0K234 Response regulator receiver protein n=8 Tax=Thermoanaerobacteraceae RepID=B0K234_THEPX Length = 537 Score = 139 bits (351), Expect = 7e-32, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 82/223 (36%), Gaps = 22/223 (9%) Query: 18 HEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDID-----ELTVCHYLQNIRQLPRNL 72 ++++ + L+ +L F + + + + ++ I + RNL Sbjct: 318 INKERLFIDR----LMTGDLQGSFTIFNEIYEWMVFEYQEDIDKIKAKLIEIIGVIKRNL 373 Query: 73 GLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFN 132 +++D I ++ N+ I N L + + + Sbjct: 374 SYYAEDENFIENRELEEILK-----INDVDKIKFIFINTLKNLF-------ENIKTINKE 421 Query: 133 SISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQ-DENTCFSKILLASRMSM 191 + T K+ R I + K L D+A+ + S K + F L R++ Sbjct: 422 KMDTFIAKIIRFIEDNFNKDITLDDVAKEVNMSYHYFSKFFKDQTGKNFIDYLTNLRVTK 481 Query: 192 ARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFA 234 A+ LLE + + + K GYS +YF F++ G+TP ++ Sbjct: 482 AKELLEDETVSIKEVCYKVGYSDPNYFSKIFKKATGMTPTEYR 524 >UniRef50_A4XFU2 Two component transcriptional regulator, AraC family n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XFU2_CALS8 Length = 508 Score = 139 bits (351), Expect = 7e-32, Method: Composition-based stats. Identities = 40/216 (18%), Positives = 80/216 (37%), Gaps = 6/216 (2%) Query: 24 SLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRNLGLHSKDRLLIN 83 L + + LL F + L ++++ Q + N+ D +L Sbjct: 297 QLTEDEVELLNA-----FMALDKEKIALLVNKIFEELEDQGDKNSIENVYKKLFDLILTK 351 Query: 84 QSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVER 143 P++ F +N +N+ + ++ + + + Sbjct: 352 AKEICPVLKDEFAKSMAFSLNMQESNNIEKSLIEFVHYCIDKIQNVKESRHKKIIKDAIT 411 Query: 144 LISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIP 202 I + A + +L DIAE S + K ++E F L R++ A+ LL + Sbjct: 412 YIERNYANQIFLSDIAEVCGVSPNYFCKIFKEETGKSFVDFLNELRINKAKELLLSTNLK 471 Query: 203 LHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSP 238 + +AEK G++ YF F++Y G +P +F + Sbjct: 472 SYEVAEKVGFNDYKYFSMIFKKYTGTSPSKFKEERQ 507 >UniRef50_Q9S309 Putative AraC-type Regulator n=1 Tax=Ruminococcus flavefaciens RepID=Q9S309_RUMFL Length = 282 Score = 139 bits (351), Expect = 7e-32, Method: Composition-based stats. Identities = 35/238 (14%), Positives = 80/238 (33%), Gaps = 12/238 (5%) Query: 7 VILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIR 66 +I + F + L+ + I+++ D + + + Sbjct: 42 IIPLHNGFTVTAGGVDYHLNEKEIIIIPPGELHSMPAQEGRRIIFQCDNSIISD-VPALE 100 Query: 67 QLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKEL 126 + I++ + +I D ++E S + +YL + M + +E Sbjct: 101 AIVPVFSEAFHITPTISKELYILSRKSILDIYSEYYSKSSLSDVRIYLCLIKMLTSVREY 160 Query: 127 I----------PLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE 176 L + V + I+ + L IA S+ + + Sbjct: 161 QLTQAADAFSGELGGRDDTRKFSMVMKYINQNYMYEIPLEKIASIAGYSKYHFSRIFKKY 220 Query: 177 N-TCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 N + + + + R+ A RLL + + +A + G++S + F F++ TP +F Sbjct: 221 NNVSYIQYINSKRIKAAERLLIDPNLSVTEVAMRAGFASLTTFNRAFKKAKNCTPTEF 278 >UniRef50_Q4V1B1 MSM (Multiple sugar metabolism) operon regulatory protein n=15 Tax=Bacilli RepID=Q4V1B1_BACCZ Length = 301 Score = 139 bits (350), Expect = 8e-32, Method: Composition-based stats. Identities = 31/232 (13%), Positives = 78/232 (33%), Gaps = 3/232 (1%) Query: 6 SVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNI 65 +++ Y +++K SL + L+ + + S L+ + Sbjct: 44 IHVVLDGKGKYYVKEKKYSLKKGDLFLIPPGESTFY--RSDAEEPWLYAWLSFGGKVAEE 101 Query: 66 RQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKE 125 N + N + ++ + + N L+ + Y + Sbjct: 102 IINFSNFKDDNYAVTSTNIQQYLEIILECMNCSYSTLENELKLNELTYRFLRLFLTDGSS 161 Query: 126 LIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKIL 184 L P + S ++ + I + + D+A + + S + + Q+ + Sbjct: 162 LSPGVKQKFSRLAIEAMIYIGKHYIEEITVSDVANHLAVNRSHLSRVFQNHFGISMKDWI 221 Query: 185 LASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 + R++ A LL + + I+ + G+ S + F F++ TP + + Sbjct: 222 IRMRINHAAYLLSMTNESVENISYQVGFHSLAAFSRIFKKVTKETPTHYRKR 273 >UniRef50_UPI000178921D transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178921D Length = 318 Score = 139 bits (350), Expect = 8e-32, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 83/234 (35%), Gaps = 13/234 (5%) Query: 16 IYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLP----RN 71 I K+ I+ + N + +D+ +++ P Sbjct: 74 ILINGMKLPFRQGDIIFINSNDLHR--AYETENLVMDVIMFEPSLLSIDLKFDPDLMAPF 131 Query: 72 LGLHSKDRLLINQSPPMPLVTAIFDSFNESG-----VNSPILSNMLYLSCLSMFSHKKEL 126 L + DR L+ + + + G + L L L+ + S +E Sbjct: 132 RSLGNVDRQSPVHDELARLLRRMMEEYKARGTSYMSLIRSDLIRFLSLANRHLSSPAQEH 191 Query: 127 IPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILL 185 P+ + + V R + + W L+++++ + S S Q T L+ Sbjct: 192 RPIKGRGMHALKE-VLRTMELHLDYGWTLQELSDLTHLSPSRFSALFQQAVGTSPHHYLI 250 Query: 186 ASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPG 239 R++ A LLE + IAE CG+ + S F F+Q+ G +P + + + Sbjct: 251 QLRLTHAVHLLETTDQKIIEIAETCGFRNLSNFNRLFKQHVGASPSEIRERAYA 304 >UniRef50_C4ZF62 Two-component sensor response regulator n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4ZF62_EUBR3 Length = 288 Score = 139 bits (350), Expect = 9e-32, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 78/227 (34%), Gaps = 4/227 (1%) Query: 15 DIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRNLGL 74 +I I L +L+ N+ + + + + + + R + Sbjct: 61 NILSNSHTIELQKGQGILIAPNVPHSYHNKNISSGNSLPWKTEFATFTGTMAATFREMFD 120 Query: 75 HSKDRLLINQS--PPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFN 132 + L+ + + F E ++ +LS Y L + Sbjct: 121 EKEYWLIDENKGMEVSEAINKAVEDFKERSSDTQMLSLDCYGIMLLLSDQSNHTHDNDDQ 180 Query: 133 SISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSM 191 S V I +++A+ ++ S+ + + + N + L R++ Sbjct: 181 SYVRFIKPVIDAIEESYIDDISAKELADSVFVSQQYLSRVFTEFMNCSVYEYLTNYRINK 240 Query: 192 ARRLLE-LRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 A+ LL + + IA GYS S+FI F++ G+TP QF + Sbjct: 241 AKELLLINSRRKVQDIASDVGYSDASHFIVMFKKLTGMTPTQFRKLH 287 >UniRef50_UPI0001C358FB two component transcriptional regulator, AraC family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C358FB Length = 273 Score = 139 bits (350), Expect = 9e-32, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 63/153 (41%), Gaps = 1/153 (0%) Query: 82 INQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKV 141 + L+ + + +S + + M H + +P+ N S V K Sbjct: 109 VEPEEMYQLLKTVKAEWMQSQKHRKKVQLMETEIRKLKAEHLTDDMPVDSNGCSRVIRKA 168 Query: 142 ERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQ 200 + + L I+E ++ +++ + + E F + L R+ A+ LL + Sbjct: 169 LNYMEDHYHEDISLESISEVVFLNKNYFSELFKKETGKSFVQYLTEYRLEKAKLLLAISG 228 Query: 201 IPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 +A+ G+ + SYFI+ F++Y G TP ++ Sbjct: 229 FKGSEVADMTGFQNNSYFISVFKKYVGCTPKEY 261 >UniRef50_Q65QI0 AraC protein n=1 Tax=Mannheimia succiniciproducens MBEL55E RepID=Q65QI0_MANSM Length = 284 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 95/222 (42%), Gaps = 3/222 (1%) Query: 16 IYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRNLGLH 75 + Q++++ ++LL F + +L + Q + +L Sbjct: 46 LRWRGQELTIQAGEMVLLAAG--QTFDVLNNPDAKLGFYQAGWIALEQRVVDEFADLFGV 103 Query: 76 SKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKK-ELIPLLFNSI 134 + + P+ + A FD ++ N +L L + + K E + + + Sbjct: 104 ETYVQELAKIQPLAPLKAHFDVVRQALENDEAPELVLKLKLFELLAWLKAEHLSFVPHEK 163 Query: 135 STVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARR 194 + ++ ++I+ + A W IA +++ SE+ +++ LQ +T F ++L RMS A Sbjct: 164 HNLLRQIRKMIASNTAFEWTAETIARQLHLSETSLRRALQKSDTTFREVLTDVRMSRALT 223 Query: 195 LLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 LL++ + + IA + GY S S F F+Q +G P ++ Sbjct: 224 LLQITKWQVARIANEVGYDSPSRFTVRFKQRFGFLPSDIREN 265 >UniRef50_A8SGH8 Putative uncharacterized protein n=2 Tax=Bacteria RepID=A8SGH8_9FIRM Length = 288 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 35/241 (14%), Positives = 83/241 (34%), Gaps = 11/241 (4%) Query: 2 THVCSVILIR--RSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVC 59 TH C+ + Y Q + + ++++ + + + + Sbjct: 38 THSCTELFYCLSGEGQFYLAGQLFPVKPDDMVIVNPQVEHTELSLNASPLEYIVLGVASM 97 Query: 60 HYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSM 119 +L + + ++R + L+ + + S + L L Sbjct: 98 EFLFSKADTNYAIFNCRENR-----ERMVTLLHMLLAEADRSLDGCETVCQDLLEVLLIW 152 Query: 120 FSHKKELIPLLFNS---ISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE 176 + L + + +++R + + + L +AE + ++ + Q E Sbjct: 153 LVRCTTISLQLEEAAPTENRECAEIKRYLDTNYREDISLDLLAELAHLNKYYLAHTFQRE 212 Query: 177 -NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 L R+ ++ +L L I+E G+SS SYF FR+ G+TP+++ + Sbjct: 213 YGISPITYLNRRRIEESKHMLGNTGYSLAQISELMGFSSPSYFSQCFRKAEGMTPNEYRR 272 Query: 236 H 236 Sbjct: 273 Q 273 >UniRef50_B9MLQ2 Two component transcriptional regulator, AraC family n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MLQ2_ANATD Length = 519 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 75/190 (39%), Gaps = 10/190 (5%) Query: 58 VCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCL 117 + +Y+ + +L L + + + + M L+ + +ES ++S +L S Sbjct: 324 IENYITQLCKLYIELFGENNLKYKVIKLIIMLLLETGIATSDESIDVEKLISQILNSSYE 383 Query: 118 SMFSHKKELIPLLFNSISTVSGKVE---------RLISFDIAKRWYLRDIAERMYTSESL 168 + K+ + LF+ T ++ I+ + ++ L I+ + Sbjct: 384 QIVEIFKKAVLSLFSKAKTKHEQIINNDSINKAIEFINQNYSEEITLSQISSTFNFNPYY 443 Query: 169 IKKKLQD-ENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYG 227 K + F L R+ A +LL+ + I+ G+S +YFI F+++ G Sbjct: 444 FSKLFKKYTGVSFKTYLTKLRIQKACQLLKNTSKSIKEISFAVGFSDPNYFIKAFKKFTG 503 Query: 228 VTPHQFAQHS 237 +TP F S Sbjct: 504 MTPSAFRSSS 513 >UniRef50_A4WEG5 Transcriptional regulator, AraC family n=5 Tax=Enterobacteriaceae RepID=A4WEG5_ENT38 Length = 279 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 42/245 (17%), Positives = 88/245 (35%), Gaps = 10/245 (4%) Query: 3 HVC-SVILIRRSFDIYH-EQQKISLHNESILLLEKNLADDFAFCSPDT-----RRLDIDE 55 H C ++ + F + + + ++ + + +D Sbjct: 36 HQCLEILYVEEGFGVAIVDNRHYTMRPGRLFFFPPFTLHKVMVDEQAEAIYRRTIIHLDH 95 Query: 56 LTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLS 115 V L++ Q + L S+ + I F SG + P+ S + Sbjct: 96 HAVLKVLRDFPQTQQRLQKLSRRGGEAWVADMADCHPHIHHLF--SGYHPPLTSESVASL 153 Query: 116 CLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKL-Q 174 +S+F+ + S ++ +V + +++ L +A + S S + +K Sbjct: 154 IISLFAMLPDDKDGAPGSSHGIASQVMFWLDEHYQQKFSLDALAGELGKSRSYVSRKFHA 213 Query: 175 DENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFA 234 + L R+ A L + IA + G+S +YFI+ F++ G TP Q+ Sbjct: 214 ETGEKIHDYLNTLRLRKACECLLHSNESVRDIATRVGFSDVTYFISAFKKGIGETPLQYR 273 Query: 235 QHSPG 239 ++ PG Sbjct: 274 KNHPG 278 >UniRef50_C6CVB2 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CVB2_PAESJ Length = 542 Score = 138 bits (349), Expect = 1e-31, Method: Composition-based stats. Identities = 36/203 (17%), Positives = 78/203 (38%), Gaps = 10/203 (4%) Query: 33 LEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVT 92 +E + F D+ E + Y ++ + ++ + V Sbjct: 342 VETKIRHIFRDMLETGGEQDMSEQLIEAY---------HVLAGAFSYIIHKNGKLLSSVL 392 Query: 93 AIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKR 152 + + ++ S + +++ L ++ ST+ V I ++AK Sbjct: 393 SPEALKFFHAPAYTTAAQLMEWSIRILQGIREDADQELKDNHSTIVRAVRSFIDANLAKD 452 Query: 153 WYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCG 211 L IA+ ++ + K + E ++ + RM A LL + I+E G Sbjct: 453 VSLPAIADHVHLHPVYLSKIYKAETGEPLTEYVYRLRMEKAAFLLRTTPSKVFEISEIVG 512 Query: 212 YSSTSYFINTFRQYYGVTPHQFA 234 Y++T+YFI F++++ VTP ++ Sbjct: 513 YNNTAYFIRVFKKFFDVTPQEYR 535 >UniRef50_C0EGI4 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EGI4_9CLOT Length = 333 Score = 138 bits (349), Expect = 1e-31, Method: Composition-based stats. Identities = 40/243 (16%), Positives = 87/243 (35%), Gaps = 30/243 (12%) Query: 20 QQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDEL--------------------TVC 59 + + LH +L+ ++ P +I Sbjct: 94 ENTVRLHQGDAILMNPHVLHWMYTEHPQDVVFNIMLSKEIFQSDVFPCMTDNRLLFHFFL 153 Query: 60 HYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSM 119 Y + +L +L + P PL+ + + F E + + + + Sbjct: 154 DYFYQLNKLDDSLTFPHSPK-----HPIEPLIKLMVEEFIEDDLCYDSVIKAHCIQLFAY 208 Query: 120 FSHKKELIPLLFNSISTVSGKVERLI---SFDIAKRWYLRDIAERMYTSESLIKKKLQ-D 175 + ++ ++ V LI + ++ L +AE + S S + + + Sbjct: 209 LARVYRERYASTDADVELNQTVIHLIYHMQQHL-RQLSLESLAEAFHYSPSHVSRLFRTR 267 Query: 176 ENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 ++++L + R+ A+ LLE +P+ IA+ G + TSY F++ YG+TP Q+ + Sbjct: 268 LGKSYTEVLNSLRIQTAKSLLETTSLPMGEIADSIGVNDTSYLNKIFKKKYGLTPLQYRK 327 Query: 236 HSP 238 Sbjct: 328 QFQ 330 >UniRef50_C6IY53 Two component transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IY53_9BACL Length = 545 Score = 138 bits (349), Expect = 1e-31, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 69/214 (32%), Gaps = 11/214 (5%) Query: 32 LLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLV 91 + + + FA + R +DE Y + + L I + + + Sbjct: 329 FVAQEIRQAFASGNAKDLRRLLDE-----YQARVDRSVDITISQVHRELAIIREAAVSEM 383 Query: 92 TAIFDSFNESGVNSPILSNMLYLSCLSMFS-----HKKELIPLLFNSISTVSGKVERLIS 146 I + + I + + ++ S + + + Sbjct: 384 RGIAAAHPPLYDAAAITEVTDPAELRRLLAGWADAAEEYGADRRETDSSQLIWHIVDYLD 443 Query: 147 FDIAKRWYLRDIAERMYTSESLIKKKLQD-ENTCFSKILLASRMSMARRLLELRQIPLHT 205 + L D+A R + S + K + + F + + R+ A LL + + Sbjct: 444 AHYFEDISLIDVATRFHLDPSYLSKLFKSVTSENFIEYVTRKRIEKACELLRSSERKISE 503 Query: 206 IAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPG 239 I+E GY + YF F++ G TP ++ + Sbjct: 504 ISELIGYENQRYFSQVFKKSTGQTPSEYREAQQS 537 >UniRef50_C0EDW5 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EDW5_9CLOT Length = 326 Score = 138 bits (349), Expect = 1e-31, Method: Composition-based stats. Identities = 50/253 (19%), Positives = 94/253 (37%), Gaps = 20/253 (7%) Query: 6 SVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDE---------- 55 + + ++LH IL+L N+ SP+ +I Sbjct: 76 MIYVYHGKAYNNFADSSMTLHTGDILILNPNIPHRLYIESPEDIVFNIMISKDLFEKSFL 135 Query: 56 --LTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPI-----L 108 ++ N + D +L +P +TA+ D E N P+ L Sbjct: 136 LLISENDLFSNFFISYLYHMNQASDSILFRHNPESG-ITAVLDMMIEEFFNKPMGYEKAL 194 Query: 109 SNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESL 168 + L L+ + L + I + A+ L A++ SE Sbjct: 195 ESFLALTFTRLTRSYSHQENLEELKKQQKIMPIIAYIRENFAEA-TLVSTAQQFNYSEKY 253 Query: 169 IKKKLQD-ENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYG 227 + + ++ F++I + ++ AR LL +P+ IA++ GY++ SYF F++ Y Sbjct: 254 LSRLIKQRTGKSFNEISIGYKLEYARELLLNSVLPISEIAQRVGYANVSYFFKAFKKRYM 313 Query: 228 VTPHQFAQHSPGT 240 TP+QF + + T Sbjct: 314 QTPYQFRKSNSAT 326 >UniRef50_Q0TS97 Transcriptional regulator, AraC family n=6 Tax=Clostridium RepID=Q0TS97_CLOP1 Length = 285 Score = 138 bits (349), Expect = 1e-31, Method: Composition-based stats. Identities = 39/248 (15%), Positives = 89/248 (35%), Gaps = 16/248 (6%) Query: 5 CSVI-LIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQ 63 C +I ++ F ++ +++KI I+ + + F P+ + + L+ Sbjct: 41 CEIIRILEGEFILFIDKEKILAKKNDIIFVHSGI---FHGGLPNDCIYECIVFDMKLLLK 97 Query: 64 NIRQLPRNLGLHSKDRLLINQSPPMPL------VTAIFDSFNESGVNSPILSNMLYLSCL 117 + + + +I P + T++F++ ++ + Sbjct: 98 DNNACTKQIYDIVNHNKVIAHKLPSNVQALNNCCTSLFEAMRVKSTGYEFIAQGALYYLI 157 Query: 118 SMFSHKKELIPLLFNSISTV-----SGKVERLISFDIAKRWYLRDIAERMYTSESLIKKK 172 + + + T V LI + L D+++ S + Sbjct: 158 GTILENQLYVKNNKYTKKTKERFLQLKNVITLIENEYQNPLTLEDLSKASGMSPKYFCRF 217 Query: 173 LQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPH 231 + N + L R+ ++ L ++ + IA CG++ SYFI TF+++ GVTP Sbjct: 218 FHEMINKTPIEYLNYYRIEISCEKLLATELSITEIALNCGFNDVSYFIKTFKKHKGVTPK 277 Query: 232 QFAQHSPG 239 Q+ + Sbjct: 278 QYLKSLKA 285 >UniRef50_B5XZ22 Transcriptional regulator, AraC family n=7 Tax=Enterobacteriaceae RepID=B5XZ22_KLEP3 Length = 287 Score = 138 bits (349), Expect = 1e-31, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 55/139 (39%), Gaps = 4/139 (2%) Query: 105 SPILSNMLYLSCLSMFSHKKELI---PLLFNSISTVSGKVERLISFDIAKRWYLRDIAER 161 P +S+ SH +L+ + + + + + A+ +A+ Sbjct: 138 QPQEQRTARSIVVSLLSHCHDLLGSQAQTSSRSQALFEAIRQYMDAHYAEPLSRESVAQA 197 Query: 162 MYTSESLIKKKLQDEN-TCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFIN 220 Y S + + Q F++ L R+ AR LL+ + + IA CG++ ++YF Sbjct: 198 FYLSPNYLSHLFQKCGPMGFNEYLNHIRLEQARMLLKGHDMKVKDIAHACGFADSNYFCR 257 Query: 221 TFRQYYGVTPHQFAQHSPG 239 FR+ +P ++ + Sbjct: 258 LFRKTTERSPSEYRRQYHS 276 >UniRef50_A8S8Z3 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S8Z3_9FIRM Length = 420 Score = 138 bits (349), Expect = 1e-31, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 71/174 (40%), Gaps = 7/174 (4%) Query: 63 QNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSH 122 + + + L + RLL P + + E+ P+L+ + + + Sbjct: 251 PLLERASQILYNYFTVRLLWAVGRPTGSLLGLARCCRENAHLQPLLTVEQPIQFVEVNE- 309 Query: 123 KKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTC-FS 181 V +V+ I +++R L D+A S + + + F Sbjct: 310 -----GDATAGKMQVVAQVQEYIQSHLSERLTLADVAAVFNFSPNYLSQLFGKYGDSGFV 364 Query: 182 KILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 + + +R++ A+ +LE + ++ IAEK GY S YF F++ G++P ++ Q Sbjct: 365 EYITETRIAAAKEMLEQGDLKVYEIAEKLGYESAFYFSKVFKKVTGLSPREYQQ 418 >UniRef50_UPI0001789612 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789612 Length = 405 Score = 138 bits (348), Expect = 1e-31, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 71/191 (37%), Gaps = 16/191 (8%) Query: 61 YLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMF 120 YL + + L + L + + + + + ++ L L+ Sbjct: 208 YLFAMENIIAELFHPAPCVLFRDHTGWIGICCWGEVDMEIAADAEQLIQKYLKLAVNVHL 267 Query: 121 SHKKELIP--------------LLFNSISTVSGKVERLISFDIA-KRWYLRDIAERMYTS 165 E +S + + +LI A + L A+ + S Sbjct: 268 EPVSEGADGAVAAAYEACREGVFKEAQLSPLVRRARQLIQEQYAVRELTLESFAQALQVS 327 Query: 166 ESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQ 224 + + L+ E T F ++ +R+ A +LL ++ + IAE+ GY S YF F++ Sbjct: 328 PVYLSRMLKKELGTSFITLMTQTRIQKAIQLLNATELSILDIAERVGYDSQHYFSTAFKK 387 Query: 225 YYGVTPHQFAQ 235 GV+P+++ + Sbjct: 388 VMGVSPNRYRK 398 >UniRef50_Q5WK40 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WK40_BACSK Length = 407 Score = 138 bits (348), Expect = 1e-31, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 56/112 (50%), Gaps = 1/112 (0%) Query: 126 LIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKIL 184 L+ + + ++ +V + ++ L+++A+ ++ + + + K+ ++E FS + Sbjct: 296 LVQEVRHKKEQLAVRVYEYVEAHFFEQPSLQEVADHLFLNAAYLSKRFKEETGEKFSDYI 355 Query: 185 LASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 RM A LL + + IA+K GY SYFI F++ + +TP +F Sbjct: 356 HRLRMDRAVELLAETNMKVSQIAKKLGYKDASYFIKVFKREFHMTPQEFRSR 407 >UniRef50_C0ECN2 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0ECN2_9CLOT Length = 334 Score = 138 bits (348), Expect = 1e-31, Method: Composition-based stats. Identities = 41/256 (16%), Positives = 89/256 (34%), Gaps = 19/256 (7%) Query: 2 THVCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDI--DELTVC 59 + + + R F + + I+LL N+ D +I + Sbjct: 78 DYFEMIYVYRGGFVNVFPDHTVRMKQGDIMLLNPNILHAPYVERDDDIVFNIFISNPMIR 137 Query: 60 HYLQNIRQLPRNLGLHSKDRLLINQSPPMPL---------VTAIFDSFNESGVNSPILSN 110 + +++ L + L + L + E P N Sbjct: 138 EKIIPLQKDNSLLISFFMEYLYFDSQDKKYLNFTDNSPDSILLTEKMIEEYIEQRPFYQN 197 Query: 111 M------LYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYT 164 M L S LS +K I +L + T+S + I + + L +A+ Sbjct: 198 MTDAYLVLLFSQLSRDYYKNHSIDVLPKNHHTLSYDIINYIGQN-CRSITLDSLAKHFQY 256 Query: 165 SESLIKKKLQD-ENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFR 223 + + + + ++ FS+I+ ++ A + +P+ I + G+ S+FI +F+ Sbjct: 257 TPNYLSRLIRQSTGKTFSQIVSQQKLQRAAGFITSTDMPIVDIGQIVGFYDVSHFIRSFK 316 Query: 224 QYYGVTPHQFAQHSPG 239 + Y +TP ++ + Sbjct: 317 KEYHLTPAEYRKTFSS 332 >UniRef50_C6CT83 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CT83_PAESJ Length = 472 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 75/195 (38%), Gaps = 7/195 (3%) Query: 47 DTRRLDIDELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVT-----AIFDSFNES 101 +D + ++I +L R L ++ + L S+ + Sbjct: 274 SDAIAAVDMPAIDAAFRHIAELFREDALSTRHAFRVYNMTISFLFKLGQTEETLYSYEQL 333 Query: 102 GVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAER 161 + + +ML + H + + + ++ + ++ + L+ ++E+ Sbjct: 334 VQSFGDVFDMLGELQALVVRHCRGGEAHPPETKNRTFNQILQYVTDHFREELSLQGLSEQ 393 Query: 162 MYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLL-ELRQIPLHTIAEKCGYSSTSYFI 219 + + S I + + E F + R++ A +LL E +H IAEK GY+ YF Sbjct: 394 FFMNPSYISQLFKKEVGETFVGYISQLRIAHACKLLDENDDYSIHEIAEKIGYNDYFYFA 453 Query: 220 NTFRQYYGVTPHQFA 234 F++ G TP Q+ Sbjct: 454 RLFKKMTGKTPTQYR 468 >UniRef50_C6CTL6 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CTL6_PAESJ Length = 533 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 72/195 (36%), Gaps = 11/195 (5%) Query: 57 TVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSP-ILSNMLYLS 115 Y+Q +R + + + M + + S N++ ++ +L + Sbjct: 339 LFRDYIQAVRLFVQYNRNLAITSVYGCIVYLMKEMNELGISVNKADPDNHGLLEQLSSFP 398 Query: 116 CLSMFSH--KKELIPLLFNSISTVSGK-------VERLISFDIAKRWYLRDIAERMYTSE 166 M + ++ + L + S K V I + L +A +Y + Sbjct: 399 TFEMMTRFVERTVCDLRVQATERHSSKDVLQLVQVRAYIDEHYGENITLDSMASLVYMNP 458 Query: 167 SLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQY 225 + F + L RM A RLL ++ ++ IAE+ GY + F + F++ Sbjct: 459 YYFSSFFKKHMGENFKQYLTEVRMKHALRLLLQSELMVYEIAERVGYQNARQFSDMFKKK 518 Query: 226 YGVTPHQFAQHSPGT 240 YG P ++ Q G+ Sbjct: 519 YGKLPQEYKQSFKGS 533 >UniRef50_UPI0001788C2F two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788C2F Length = 532 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 39/206 (18%), Positives = 79/206 (38%), Gaps = 17/206 (8%) Query: 46 PDTRRLDIDELTVCHYLQNIRQLPR----NLGLHSKDRLLINQSPPMPLV-TAIFDSFNE 100 PD + + L++ R + R S RL+ + ++ +A FD+ Sbjct: 313 PDETSRALHRCLIRGELESFRSIIRRELGESFRLSPARLVRSLFQITLIMESAAFDNIRH 372 Query: 101 SGVNSPILS--------NMLYLSCLSMFSHKKELIPLLFNSIS---TVSGKVERLISFDI 149 S P+ + + ++ + L S T+ +R I + Sbjct: 373 SRGGGPLWISPEWVLWLETPEQAERLLMQWAQDFVDNLTESGDRDATLIESAKRYIEENY 432 Query: 150 AKRWYLRDIAERMYTSESLIKKKLQD-ENTCFSKILLASRMSMARRLLELRQIPLHTIAE 208 + L +AE+ + + ++ F + + RM A RLL+ ++ + IAE Sbjct: 433 MQELSLTSLAEQYNYHPTYFSEMFKEGAGVSFIQYVTEVRMKHAVRLLQETRLTVWDIAE 492 Query: 209 KCGYSSTSYFINTFRQYYGVTPHQFA 234 G+SS YF + F++ + +P +F Sbjct: 493 LTGFSSPGYFSSKFKKMFNQSPSEFR 518 >UniRef50_B8FQG3 Transcriptional regulator, AraC family n=2 Tax=Desulfitobacterium hafniense RepID=B8FQG3_DESHD Length = 273 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 80/234 (34%), Gaps = 9/234 (3%) Query: 7 VILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIR 66 VI S + + + ++ + S + E V HY Sbjct: 46 VIPFSGSACFTFDGKPYVIEPGMVVHAGPGMRL-----SKEVIGDREWEYAVIHYHIPQH 100 Query: 67 QLPRNLGLHSKDRLLINQSPPMP-LVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKE 125 + H L +S +P LV I D + G + + +L+LS L Sbjct: 101 ERDEYPLFHKDFSLAHGRSAKVPHLVRQILDIQSIPGAAAKFQTKVLFLSLLQEIFTAAC 160 Query: 126 LIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKIL 184 P N S + + I + A ++ +A+ + L Sbjct: 161 GQPGQEN--SKLIEEAMGYIRLNYADELTVQKVADEFSVERRQFSYLFKRHTGMSPIHYL 218 Query: 185 LASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSP 238 + R+S A+ LL + +AE GY+ + YF F++Y GV+P ++ + Sbjct: 219 IECRISKAKELLGSPGCSVKQVAEWVGYTDSLYFSKAFKKYTGVSPSEYREGFA 272 >UniRef50_A6AXU3 Transcriptional regulator, AraC family protein n=3 Tax=Vibrio parahaemolyticus RepID=A6AXU3_VIBPA Length = 238 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 46/192 (23%), Positives = 90/192 (46%), Gaps = 4/192 (2%) Query: 51 LDIDELTVCHYLQ--NIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNES--GVNSP 106 + + Q N R+L + + + + + +A+ + ++ Sbjct: 43 FRLAACFIEKLNQQLNFRELCDGVFSGNVAVSFTLRPGIVDIYSALKAMVEKGCGNRSND 102 Query: 107 ILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSE 166 L ++ + + ++ S S++S ++ LIS D+ K W L++IA+ +Y SE Sbjct: 103 ELLDINSMLLYLLMHFEQSASQAETRSYSSLSSRIRALISKDLTKPWTLKEIAKLVYMSE 162 Query: 167 SLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYY 226 S +K+KL E T F+ +L A+R+ A++++ + IAE CG+ SYF FR+ Y Sbjct: 163 STVKRKLNKEGTTFTDVLQAARLDTAQKMVCNSDASVSAIAELCGFKHASYFGACFRKEY 222 Query: 227 GVTPHQFAQHSP 238 G TP + + + Sbjct: 223 GATPLAYRKQAQ 234 >UniRef50_UPI0001C3678C two component transcriptional regulator, AraC family protein n=2 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C3678C Length = 539 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 55/135 (40%), Gaps = 1/135 (0%) Query: 108 LSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSES 167 LS+ L L K + T+ + + + D++ ++ + Sbjct: 400 LSSHNMLQYLEYLLSKAMEYKDVVERPHTIVDTIRDYMDHHFQENLSRDDLSRLVFLNPD 459 Query: 168 LIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYY 226 + + + E S L+ R+ +A+ LL + P+ I+ + GY + +YF F++ Sbjct: 460 YLSRLFKKEMGLSISSYLIQKRIDLAKELLSTTRTPVSVISSQAGYDNFAYFTKVFKEKT 519 Query: 227 GVTPHQFAQHSPGTF 241 G++P+++ + Sbjct: 520 GMSPNEYRKKCQSAD 534 >UniRef50_B8CZL9 Response regulator receiver protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8CZL9_HALOH Length = 386 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 88/227 (38%), Gaps = 5/227 (2%) Query: 16 IYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRNLGLH 75 ++ + S+++ +N+ ++ + + I +L NI Q +H Sbjct: 156 FFNRDRDEFFREYSLIIKNENMFNELKNGREEDLIIAIKKLFEDINELNINQESALFIIH 215 Query: 76 SKDRLLINQSPPMPL-VTAIFDSF---NESGVNSPILSNMLYLSCLSMFSHKKELIPLLF 131 + L + M + I D N+S + + + I Sbjct: 216 TVVLLTLKNIKEMGFDLKEIIDFMELGNKSIDVEKVSKETMETWLTGFLVKVSQYIAQQK 275 Query: 132 NSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD-ENTCFSKILLASRMS 190 + + KV+ ++ +++ L +AE S S + + + FS+ L R++ Sbjct: 276 SEDRELVLKVKEAVNKNLSSGLTLNQLAEEFNLSNSSLSQLFRKYTGKNFSEYLDDIRIN 335 Query: 191 MARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 AR LL+ ++ IA++ G+ YF + F++ GV+P + ++ Sbjct: 336 KARELLKTTGKKVYEIADEIGFDDPYYFSSWFKKRTGVSPTTYRENF 382 >UniRef50_A5Z7W7 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z7W7_9FIRM Length = 334 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 83/229 (36%), Gaps = 7/229 (3%) Query: 11 RRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPR 70 + Y ++++ S+ IL+ + + + F D + T N+ + Sbjct: 91 HGTIYYYIDKKQYSISAGGILIYKPSELLHYEFFLKDAPDIYWVHFTG----DNVDNILG 146 Query: 71 NLGLHSKDRLLINQSPPMP-LVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPL 129 L L +K + P + I ++ +S++L L L S I Sbjct: 147 ELNLSTKHAFMGTICPEYDTIFDKIISELLNRKLHFMDISSILMLELLYTISRDICTITY 206 Query: 130 LFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASR 188 + + + KV + + + + + IA+ + S S + K L R Sbjct: 207 ISSKNDLILEKVLEIFNTNYPNKISITSIAKELNYSSSWLSKTFTKHFGLSPKAYLTNLR 266 Query: 189 MSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 + A+ +L + + +AE+ G+ YF F G+TP Q+ Q Sbjct: 267 IEKAKSMLLST-MSIRQVAEQTGFPDQMYFSRVFTNAEGITPSQYRQKH 314 >UniRef50_C6CRZ9 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CRZ9_PAESJ Length = 501 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 75/198 (37%), Gaps = 14/198 (7%) Query: 54 DELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNML- 112 D + Y + + +L L L+IN S + ++ + F+ G ++ L + Sbjct: 304 DLQALHDYFEKVGGQAGSLQLTDGKFLVINHSLALDQISEVLGLFSHQGKSAESLLQTID 363 Query: 113 ----YLSCLSMFSHKKELIPLLF-------NSISTVSGKVERLISFDI-AKRWYLRDIAE 160 + S F + N + I ++ +AE Sbjct: 364 QLPGSMELKSWFKAACQDFETRLDRWKQQANPYVNSIQQAIDYIEEHYLDSDLSIKQVAE 423 Query: 161 RMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFI 219 ++ + S + + E F+ + ++ A+ LL + + I + G+ ++YF Sbjct: 424 NIHLNPSYLSTLFKKETGETFTGYVNKLKLQKAQVLLRNTDMKISEICQTVGFEDSTYFS 483 Query: 220 NTFRQYYGVTPHQFAQHS 237 + F++++ ++P +F Q+ Sbjct: 484 SVFKKHFQISPSEFRQNH 501 >UniRef50_Q9K9C1 Two-component response regulator n=1 Tax=Bacillus halodurans RepID=Q9K9C1_BACHD Length = 510 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 73/190 (38%), Gaps = 2/190 (1%) Query: 51 LDIDELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSN 110 LD E Y Q + LG + +++ + + + ++ + + Sbjct: 314 LDYVEYMSTRYTQTSTECKAFLGNIIFNMIVLMGNLKYDVKELEREKYHYFATINAAKNV 373 Query: 111 MLYLSCLSMFSH-KKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLI 169 C F K++I + N S+ K+ I ++ L +A + + S + Sbjct: 374 REATDCFYQFLEVTKQIISVYSNEGSSSIQKMLAYIEEHHSEPLSLSQLANYFHFNPSYL 433 Query: 170 KKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGV 228 + + FS+ L R+ A+ L+ IP+ I GYS SYF F++ G+ Sbjct: 434 SAYFRQHHDEGFSEYLNKVRIRKAKEWLKSSTIPISEIYALVGYSDHSYFCKVFKKRTGM 493 Query: 229 TPHQFAQHSP 238 P ++ + + Sbjct: 494 PPSRYRRENA 503 >UniRef50_UPI0001BC838F helix-turn-helix- domain containing protein AraC type n=1 Tax=Bacteroides sp. D2 RepID=UPI0001BC838F Length = 289 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 48/239 (20%), Positives = 84/239 (35%), Gaps = 12/239 (5%) Query: 8 ILIRRSFDIYHEQQKISLHNESILLLEKNLADD---FAFCSPDTRRLDIDELTVCHYL-- 62 +++ S N ++LL L + E +L Sbjct: 41 LVMNTSGKRIIGDSIEDFENCDLVLLGPGLPHKWKAPTLDETQVITIQFHEQMYNSFLLN 100 Query: 63 QNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVN------SPILSNMLYLSC 116 + + + R L + S ++ + + + N G N S + + Sbjct: 101 KRVFEPIRELLIRSTRGIVYTGKTFERVKERLLNLSNARGFNTALEFYSILYDLSIADEQ 160 Query: 117 LSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD- 175 + S + L+ S S K+ + I + K L++IAE + SES I + Sbjct: 161 RLLTSASYDSSLLVRESRSRRIEKICKYIEVNFKKDITLKEIAELVNMSESAISHFFKKR 220 Query: 176 ENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFA 234 N F L R+ A RLL + IA +CG+S+ S F F++Y TP + Sbjct: 221 TNRSFITYLTDVRIGYASRLLAETTQSVADIAFECGFSNLSNFNRIFKKYKNQTPTDYR 279 >UniRef50_C6D6F5 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D6F5_PAESJ Length = 778 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 71/176 (40%), Gaps = 3/176 (1%) Query: 64 NIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHK 123 ++Q +L + + ++++ P L + + + + + + + ++ Sbjct: 603 EVQQGMLHLLGNIQHVIMVSGVNPNRLFKGV-NLYEQLSQIREPKRMLCWFRDKVLAPYQ 661 Query: 124 KELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD-ENTCFSK 182 KEL + + + + + L + AE + T+ + K + F Sbjct: 662 KELSCRAGSEVKRLIEAAMIYMQQYYRQDISLDNCAEHIGTNPFYLSKSFKVVTGKNFID 721 Query: 183 ILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSP 238 L R+ A+ LL ++ ++ +AE+ GY SYF F++ G+TP + + S Sbjct: 722 YLTELRIERAKELLRESELKINDVAEQVGYQ-HSYFNRIFKKLEGMTPTSYREQSQ 776 >UniRef50_Q5WIZ4 Putative uncharacterized protein n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WIZ4_BACSK Length = 283 Score = 137 bits (346), Expect = 2e-31, Method: Composition-based stats. Identities = 37/246 (15%), Positives = 82/246 (33%), Gaps = 15/246 (6%) Query: 6 SVILIRRS-FDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQN 64 +I++ + + + L + I+++ N T L + Sbjct: 39 EIIMVHQGTCTFFIDDCFFELASGDIVIVPGNSIHCSLLDKGKTVTTS-ALYFCPSLLAS 97 Query: 65 IRQLPRNLGLH-------SKDRLLINQSPPMPLVTAIFDSFNESGVNSPILS-----NML 112 + + +K + + +FD + + + S ++ Sbjct: 98 MIGSESDSLHSLFTTAKTTKQYRYYMEREKQAFLAGLFDEIAKETAIADLYSGETVALLI 157 Query: 113 YLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKK 172 + + + + L + + I + + L+ +A S KK Sbjct: 158 RYAIVFVSRNCGTAQEKLSPLVPAWIKESLAYIDAHLHEELDLKMLAAHACVHPSYFSKK 217 Query: 173 LQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPH 231 + + + L + R+ A+ LL+ + + IAE CGY S +F TFR G TP Sbjct: 218 FKASIGLTYIEFLKSKRLVKAKDLLKTTDLSIQAIAEACGYHSMPHFYRTFRAATGTTPA 277 Query: 232 QFAQHS 237 + ++S Sbjct: 278 AYRKNS 283 >UniRef50_C6CT15 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CT15_PAESJ Length = 520 Score = 137 bits (346), Expect = 3e-31, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 79/178 (44%), Gaps = 10/178 (5%) Query: 60 HYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSM 119 ++ N+ D L+ P + + ++ D FN + + + ++L LS + Sbjct: 350 QFMANLLYTAVQKVDGLLDELVKLTPPGVGVYQSVADFFNLTEL-KERIQHLLELSMYRL 408 Query: 120 FSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NT 178 L + V V++LI D K L +++E+++ + S + + E Sbjct: 409 -------ASLRKEGGNRVIETVKQLIQQDYDKDLELTELSEKVFLNPSYLSTLFKQETGL 461 Query: 179 CFSKILLASRMSMARRLLELR-QIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 ++ +L RM A+ LL+ R + ++ + E+ GY + YF F++ G+TP ++ Sbjct: 462 TITQYVLQLRMMKAKELLKKRLDLKVYEVGEQVGYPDSIYFNKVFKKMVGITPKEYRN 519 >UniRef50_Q9K690 Two-component response regulator n=1 Tax=Bacillus halodurans RepID=Q9K690_BACHD Length = 530 Score = 137 bits (346), Expect = 3e-31, Method: Composition-based stats. Identities = 40/239 (16%), Positives = 81/239 (33%), Gaps = 20/239 (8%) Query: 7 VILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIR 66 +I + Y + + + + L +E+ A S D LQ Sbjct: 287 IIYDHKQASYYFYDKNVKIRADEQLPIERENKLIEAIKSGDG----------EKALQAFD 336 Query: 67 QLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHK--- 123 + + SK L + L + NE G++ + S + + Sbjct: 337 HYVQAILRCSKHPLHDMRKYLQQLFIILGRLLNEMGLHWETAQDFARFSTVHQVTEHGKS 396 Query: 124 ------KELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE- 176 + L ++ + + L D+A+ + S + K ++ Sbjct: 397 EILHIVRTLQEWRTTDEQSLMLLARDYVHDHFREPLTLDDLAKHIGLSPYYVSKLFKERF 456 Query: 177 NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 + FS+ + R+ A++LL L Q L I + GY +YF F++ G +P + + Sbjct: 457 DLTFSEYVTQLRVEHAKQLLSLTQKSLKEITYEIGYKDPNYFSRVFKKLTGKSPSDYRK 515 >UniRef50_B5JUK1 AraC-type DNA-binding domain-containing protein n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JUK1_9GAMM Length = 332 Score = 137 bits (345), Expect = 3e-31, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 73/212 (34%), Gaps = 15/212 (7%) Query: 41 FAFCSPDTRRLDIDELTVCHYL-------QNIRQLPRNLGLHSKDRLLINQSPPMPLVTA 93 F + R D + L + L + Sbjct: 119 FITFNNTFNRFDANHFLEESLLVIWHRTACWMVDQLIPLKSARFSYPAPPHQSAYKAIFN 178 Query: 94 IFDSFNESGVNSPILSNMLYL-------SCLSMFSHKKELIPLLFNSISTVSGKVERLIS 146 F+++ + L L + + + + +G++ LI Sbjct: 179 TELHFDQAVTQLEFPAKFLELPVAQSERTLVEFLRESPADLLARPAKDESYAGRIRALIG 238 Query: 147 FDIAKR-WYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHT 205 +DI +AE++ S ++++L++E T + ++ R +A L Q +H Sbjct: 239 YDIECDLPAFESVAEQLGLSPQTLRRRLKEEGTSYQELKDLIRRDIALHFLNKPQYSIHE 298 Query: 206 IAEKCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 IA+K G++ S F F+++ G+TP + Q Sbjct: 299 IAQKVGFAEPSAFHRAFKKWVGLTPSDYRQTH 330 >UniRef50_A6CLV0 AraC-type DNA-binding domain-containing protein n=1 Tax=Bacillus sp. SG-1 RepID=A6CLV0_9BACI Length = 525 Score = 137 bits (345), Expect = 3e-31, Method: Composition-based stats. Identities = 41/214 (19%), Positives = 84/214 (39%), Gaps = 7/214 (3%) Query: 32 LLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIR--QLPRNLGLHSKDRLLINQSPPMP 89 LL+ + +A S ++D ++ + L+ L + + LL N Sbjct: 309 LLDYSNDLKWALRSGSMEQIDTQINSLFNLLEKDFTFSLDQIATWDRQFELLKNNWLKEY 368 Query: 90 LVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSI----STVSGKVERLI 145 + + L KEL+ +L ++ ++E + Sbjct: 369 EINNEVTFVKREDYWKEDGTFSLPKFKKEKADEFKELVKILSDAKYQKEKNSMQRIEEYL 428 Query: 146 SFDIAKRWYLRDIAERMYTSESLIKKKLQD-ENTCFSKILLASRMSMARRLLELRQIPLH 204 + + L++IA+R Y S I +K + + + L + RM A+ LL+ + ++ Sbjct: 429 QKNYQEDINLQEIADRFYLSREYISRKFKQDYDATITDYLTSIRMEKAKNLLKNPYLKIY 488 Query: 205 TIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSP 238 +A GY + YF F+++ GVTP+++ Q Sbjct: 489 EVAYGVGYQNEKYFSKVFKKHEGVTPNEYRQSYS 522 >UniRef50_C6J0N4 Response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J0N4_9BACL Length = 533 Score = 137 bits (345), Expect = 3e-31, Method: Composition-based stats. Identities = 36/238 (15%), Positives = 89/238 (37%), Gaps = 21/238 (8%) Query: 20 QQKISLHNESILL---LEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRNLGLHS 76 ++ L IL+ ++ P+ L+ + + + Sbjct: 295 DERFFLGPGQILVAGDVKPGYRYGTLPPFPEQAWLEALQQLRSEEAEAMLHDYLINVRQL 354 Query: 77 KDRLLINQSPPMPLVTAIFDSFNESGVN---SPILSNMLYLSCL--------------SM 119 + + + L+ + + + +N P+ LY S + Sbjct: 355 RIDKSLVYEWAIDLLDRLEEQIHSPSLNGQAEPVKRAALYQSVYDCQTLQEIEAAIWRAA 414 Query: 120 FSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQ-DENT 178 + + L+ + + + +V ++I + ++ ++ ++Y S + ++ + Sbjct: 415 AHYLELLMERATDKNAKLVHQVCQIIDNTYHEPITIQSLSSQVYLSPNYLRSIFRDKTGM 474 Query: 179 CFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 L R+ A+ +L + + IA+K GY STSYFI+ F + GVTP+++ ++ Sbjct: 475 TIHDYLTRIRLEKAKEMLADPSLKVQDIAQKIGYESTSYFISLFVKNQGVTPNEYRKN 532 >UniRef50_A1RF43 Transcriptional regulator, AraC family n=2 Tax=Shewanella RepID=A1RF43_SHESW Length = 293 Score = 137 bits (345), Expect = 3e-31, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 78/238 (32%), Gaps = 24/238 (10%) Query: 3 HVCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYL 62 + C L+ S I+ + + +NL P D + T + Sbjct: 76 YRCHAGLVDFSIPIFINGNLTGFVSCGQARVAENLPL------PKIVENDKNLPTESKLI 129 Query: 63 QNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSH 122 + L + L+ L+ I +++ N I+ N S Sbjct: 130 E--------LYHEVPELSLMKIKSAAQLLNLIIENYLSKEYNLRIVKN---------VSP 172 Query: 123 KKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD-ENTCFS 181 K + I+ + + L +A + S + ++ T F+ Sbjct: 173 VKNQKLETLGRHQATMEMILNHINQNFSDNLNLEQMASKANLSMFYFSRTFKELTGTGFT 232 Query: 182 KILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPG 239 L+ RM+ A LLE + IA GY+ YF F++ + +P +F HS G Sbjct: 233 AYLINKRMTEAHCLLEQTNWSIEKIARSVGYNDVHYFSRLFKKTFNRSPSEFRNHSSG 290 >UniRef50_Q1QUA4 Transcriptional regulator, AraC family n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QUA4_CHRSD Length = 303 Score = 137 bits (345), Expect = 3e-31, Method: Composition-based stats. Identities = 39/238 (16%), Positives = 80/238 (33%), Gaps = 14/238 (5%) Query: 15 DIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRL----DIDELTVCHYLQNIRQLPR 70 + + +++L+ N+ + D+R + D+ +L+++ L Sbjct: 58 NYFVGDYIGRFGPGNLVLVGPNVPHAWLSDPDDSRSVIKGRDVVLQFKGEWLEHMMALCP 117 Query: 71 NL-----GLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYL----SCLSMFS 121 L + + + Q + + E +L+ + L C Sbjct: 118 ELNCLSTLIEDSRQGVAFQGEEATRCGELLITMGEQDHAGRLLTMLTILRGLSQCDYATL 177 Query: 122 HKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQ-DENTCF 180 +E S + R I + + +A R S S + + F Sbjct: 178 SSREYGLEATGVSSAQVDAILRYIHDHFHEELRMSALAARNGMSPSSFSRFFKHATGDTF 237 Query: 181 SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSP 238 L R+ A +LL + + I + GY++ S F FR+ G+TP Q+ Q + Sbjct: 238 VAFLRRIRIGHACQLLLEGRQSIADICFQVGYNNLSNFNRHFRELKGMTPRQYQQSTA 295 >UniRef50_C2BXH0 Response regulator n=1 Tax=Listeria grayi DSM 20601 RepID=C2BXH0_LISGR Length = 495 Score = 137 bits (345), Expect = 4e-31, Method: Composition-based stats. Identities = 34/210 (16%), Positives = 81/210 (38%), Gaps = 3/210 (1%) Query: 35 KNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAI 94 +++ + R + + + +++ L +++ + + + Sbjct: 284 PSISFVAFNKALSIRDFETVQAEITKIFDTLKK-SEALPNYTRHIVFLIFIDLYRQFETV 342 Query: 95 FDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLL-FNSISTVSGKVERLISFDIAKRW 153 + F + +S L + E+ S V +I + ++ Sbjct: 343 TEHFYQEHAEKIAISQNFEELQLVIEETITEIRAQKGKRQYSEHVQDVLAIIHNEYDQQL 402 Query: 154 YLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGY 212 L+D+A R++ + + + + E N FS+ L R+ A+ L ++ IA+K GY Sbjct: 403 NLKDVANRLHMNTMYVGQLFKKETNKSFSQYLHQYRIKKAQNFLVDTSDTINEIADKTGY 462 Query: 213 SSTSYFINTFRQYYGVTPHQFAQHSPGTFS 242 +S YF +F++ G++P +F + F Sbjct: 463 TSAGYFYKSFKKICGISPKEFREQYQSNFD 492 >UniRef50_C6CZ56 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ56_PAESJ Length = 519 Score = 137 bits (345), Expect = 4e-31, Method: Composition-based stats. Identities = 34/217 (15%), Positives = 77/217 (35%), Gaps = 11/217 (5%) Query: 33 LEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVT 92 LE N+ ++ D+ + + + ++ D ++ S + Sbjct: 302 LEPNVEENVEQMLAAILDYDLVSIDDRLLKLFDKNESVSQKQYAYDLIIRVTSKLHADLL 361 Query: 93 AIFDSFNE----------SGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVE 142 ++ E + ++L F + L + + Sbjct: 362 QRNENLYELLKWDAQKAAVLFQFETIDDILSWLRRRFFELSELLYVKRQKQKRKLFDNIM 421 Query: 143 RLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQI 201 + + ++ L+++A + + + ++E T FS L RM R LL + Sbjct: 422 AFVDERLEQKITLKEVAAHFDFTPNYLGTLFKEETGTLFSDWLNERRMDRVRELLADPCL 481 Query: 202 PLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSP 238 ++ IAE+ GY + YF F+Q+ G+TP ++ + Sbjct: 482 KVYEIAERVGYKNIIYFNRQFKQFTGMTPGEYRKKHK 518 >UniRef50_C6CWE3 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CWE3_PAESJ Length = 278 Score = 137 bits (345), Expect = 4e-31, Method: Composition-based stats. Identities = 34/239 (14%), Positives = 84/239 (35%), Gaps = 4/239 (1%) Query: 6 SVILIRRSFDIY-HEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQN 64 +I++ ++ Q S IL+ K + + + ++ + Sbjct: 38 EIIVVCGGQGMFTIGGQSYSASGGDILVYNKGVLHEEQSSIDNPLITYYCGFSLPKASPS 97 Query: 65 IRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHK- 123 + R L+ I D + +S L S + + Sbjct: 98 -EDWVIPPDVEPVIRSSRVFPEIEALMKMIVDESSIKEDGYEGISRYLINSVILLLRRAV 156 Query: 124 KELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSK 182 + + S + ++ +++ I + + L+D+ + + + I +D Sbjct: 157 RNQQHIKQESNTGLAEQIKDYIDRNFTQNISLKDLGRQFHVNPYYISHVFKDHYRISPIN 216 Query: 183 ILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGTF 241 + R+ A RLL ++ + +A+ GY + +YF FR+ G++P++F + + Sbjct: 217 YAIHRRIGEATRLLVTTEMKVWEVAKLLGYDNPNYFSIIFRRVTGLSPNRFRESNQQNL 275 >UniRef50_B1BNT9 Transcriptional regulator, AraC family n=4 Tax=Clostridium perfringens RepID=B1BNT9_CLOPE Length = 285 Score = 137 bits (345), Expect = 4e-31, Method: Composition-based stats. Identities = 35/230 (15%), Positives = 81/230 (35%), Gaps = 10/230 (4%) Query: 18 HEQQKISLHNESILLLEKNLADDF---AFCSPDTRRLDIDELTVCHYLQNIRQLPRNLGL 74 E++ + L+ N + ++ + + Y++ P N Sbjct: 61 FEKKYYEVSPGEGFLICPNEICSYQSDENDPWHYMWIEFNGIKAKLYMEEAGLTPANPIF 120 Query: 75 HSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHK-KELIPLLFNS 133 K+ + + ++ + + + N L LYL S+ + L Sbjct: 121 KLKESI-----NSLKIIEEMKSIISNNKKNPSFLIGHLYLFINSLIEFSLNSTLNELDTL 175 Query: 134 ISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMA 192 + I + + + D++ R S+S + + NT + L+ +M A Sbjct: 176 NELYIREALNFIEENYNRNISVEDVSNRCNLSKSYFTRIFKKHMNTTPQEFLIQYKMLQA 235 Query: 193 RRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGTFS 242 LL+ + + + +AE GYS+ F F++ + ++P ++ S Sbjct: 236 CNLLKDKSLSISQVAELLGYSNQFNFSVAFKKKFNLSPSKWRTTFINNIS 285 >UniRef50_C1PBK0 Transcriptional regulator, AraC family n=1 Tax=Bacillus coagulans 36D1 RepID=C1PBK0_BACCO Length = 768 Score = 137 bits (345), Expect = 4e-31, Method: Composition-based stats. Identities = 40/239 (16%), Positives = 87/239 (36%), Gaps = 7/239 (2%) Query: 7 VILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDT-RRLDIDELTVCHYLQNI 65 +++I+ ++ Q L +LL+ N + L I + Y I Sbjct: 29 LLVIKGELEVTVNQHACHLSENHLLLINANDIRSMKGNKENVVLSLQIPLEMIEAYYPAI 88 Query: 66 RQLPRNLGLHSKD-RLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKK 124 + + ++D + + L+ IF + + S I + + + Sbjct: 89 HECRFDCDSSNEDNGMYMFFDQIRQLMAKIFIAHYQQKEGSEIEIYSMIFQIVLILIRNF 148 Query: 125 ELIPLLFNSISTV----SGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTC 179 + L ++ S + ++ I + K L +IA R Y S + + +++ Sbjct: 149 KTTYLGRHAHSRINDERMKEILAYIGKNYRKPITLAEIANRHYLSLYYLSRYFKEQVGES 208 Query: 180 FSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSP 238 FS+ + R+ A R L P+ I+ G+ + F F++ Y TP ++ + Sbjct: 209 FSQYIKQLRLKSAVRELVYTDHPITRISLNNGFPNVKAFNKAFKEKYRQTPSEYRRLHQ 267 >UniRef50_UPI0001C3522D two-component system, response regulator YesN n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C3522D Length = 495 Score = 136 bits (344), Expect = 4e-31, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 91/244 (37%), Gaps = 15/244 (6%) Query: 6 SVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHY---L 62 S+ I + E + L +A + + D+L + Y + Sbjct: 251 SISQIYTQLEKRLENHFFFPEQN--IFLPDGPDHPYAASGHISIDIVSDDLRLKDYDSLM 308 Query: 63 QNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSF--------NESGVNSPILSNMLYL 114 ++ L +L L+ + L+ I N+ +N++ L Sbjct: 309 HHLEDLFESLKHEKTHSLIFVKYCFTELMKEIIHYLPDDQKPDLNKVAEKIYSSANIVEL 368 Query: 115 SCLSMFSHKKELIPLLFNSISTV-SGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKL 173 ++ KK L N S + S K+ + I + + L DI+ Y S + + Sbjct: 369 MDMTCSQAKKLLSQTQKNQGSCLKSDKIRQYIYQNYTQPLSLNDISSHFYISPNYLCSVF 428 Query: 174 QDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQ 232 + E K + R+ A +LL ++ ++ IAE G+S+ SYF FR YYG +P Sbjct: 429 KKETGCNLMKFINEYRLEQAAKLLLETEMKVNKIAETVGFSNPSYFSQRFRDYYGESPEN 488 Query: 233 FAQH 236 + Q Sbjct: 489 YRQK 492 >UniRef50_C5BHZ4 Helix-turn-helix-domain containing protein, AraC type n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BHZ4_TERTT Length = 350 Score = 136 bits (344), Expect = 4e-31, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 71/157 (45%), Gaps = 3/157 (1%) Query: 82 INQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKV 141 + Q + + + +F+++ + P++ + S ++ S + + + +V Sbjct: 191 VRQESVIHDCSDVGFAFSKAVLEYPLVQDH--ESLMAFLSTAPYHLVTQDPLKLSFTERV 248 Query: 142 ERLISFDIAKRW-YLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQ 200 ++ ++ + ++E + S + ++++L E T + K+ RM +A L + Sbjct: 249 RNILKREVNRSIPSAEQLSEMLNMSVTTMRRQLSKEGTSYQKLKDECRMEVAIHYLACAE 308 Query: 201 IPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 + IAEK G+ S F +F+++ G TP ++ Q Sbjct: 309 LSNADIAEKLGFDEPSAFFRSFKKWTGQTPGEYRQQQ 345 >UniRef50_D1PIK0 Putative pectin acetylesterase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIK0_9FIRM Length = 615 Score = 136 bits (344), Expect = 4e-31, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 75/219 (34%), Gaps = 7/219 (3%) Query: 17 YHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRNLGLHS 76 E + L + ++ + + L + Q+ R L + Sbjct: 49 IIEDSQYILQPDEFIIFPPFVMHH--SFEENDVPFRRLLLYFNPEVIRSPQILRTLSERA 106 Query: 77 KDRLLINQS--PPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSI 134 + L P L+ I + S L ++ + + Sbjct: 107 RVYKLPRAQSAPIYNLMKDILQEQERDDLYSRELITLMVNALALQLVRNSDEAA-RPEQR 165 Query: 135 STVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD-ENTCFSKILLASRMSMAR 193 + V+ + + + L +A Y S+ + ++ + ++ + + R+ A+ Sbjct: 166 NRVTD-IINYLHEHFTEDITLEQLANHFYVSQYHLCREFKRYTSSTIVQYIHNLRVLHAQ 224 Query: 194 RLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQ 232 RLL+ + I+++ G+S+ ++F ++ G++P Q Sbjct: 225 RLLQESDYSITEISKRVGFSNVTHFNRVYKSVTGMSPSQ 263 >UniRef50_C0C1J0 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C1J0_9CLOT Length = 544 Score = 136 bits (344), Expect = 4e-31, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 62/162 (38%), Gaps = 1/162 (0%) Query: 79 RLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVS 138 +LL + + + + V + L ++ ++ +S T+ Sbjct: 377 KLLAEKGKDTETAVKMLERLDRQAVKNTALEEFRKYLEQTLCVISRQFDDRKKSSGKTLI 436 Query: 139 GKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLE 197 + + +K L IA + + + S + + + E N F + R+ A LLE Sbjct: 437 TDILAYVDEHYSKDVSLGTIAGKFFINPSYLSQLFKKEMNMKFIDYITDVRIKKALVLLE 496 Query: 198 LRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPG 239 + ++ +AE GY T YF F ++ G TP Q+ G Sbjct: 497 TTSLTVNEVAEAVGYKDTRYFREIFVKHMGKTPSQYRMEGAG 538 >UniRef50_B9XAQ1 Transcriptional regulator, AraC family n=2 Tax=Verrucomicrobia RepID=B9XAQ1_9BACT Length = 326 Score = 136 bits (344), Expect = 4e-31, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 73/178 (41%), Gaps = 4/178 (2%) Query: 63 QNIRQLPRNLGLHSKDRLLIN---QSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSM 119 Q R+ P N +L+ + L A FD+ S + ++L + + Sbjct: 146 QVFRKKPTNTQFERTAQLIAEWGGEVDKDRLRQAYFDTKVVSTRQHEAIVSLLEIFAQHI 205 Query: 120 FSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD-ENT 178 ++ N+ V + +R I + A+ L ++A+ + TS K + Sbjct: 206 SLVSNWVLVQERNAEPPVIARAKRYIEDNQAEDLTLSEVAKAVNTSTFYFCKMFKKATGL 265 Query: 179 CFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 F++ + R+ A+ LL + + +A + G+ S ++F F++ G +P ++ + Sbjct: 266 HFTEYVSRVRIEKAKNLLLNPNLRVSEVAFEVGFQSLTHFNRVFKKIVGQSPTEYREQ 323 >UniRef50_D0MC89 Putative AraC-type regulatory protein n=3 Tax=Vibrio RepID=D0MC89_VIBSE Length = 269 Score = 136 bits (344), Expect = 5e-31, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 88/234 (37%), Gaps = 10/234 (4%) Query: 8 ILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQ 67 +L+ + ++ L L + + + + + ++ Sbjct: 35 LLVHQP-----NGEQFELKAGDFTLYNSADLSSAEAIPSEKGFKALALVFNPNLFCDFKK 89 Query: 68 LPRNLGLHSKDR-LLINQSPPMPLVTAIFDSF--NESGVNSPILSNMLYLSCLSMFSHKK 124 L +++R + V + D+ S + ++ LS+ + Sbjct: 90 AHPMLRSKTEERRFYPFSAQASSEVAQLKDTLVNLASRNAPDYTQGHIAMALLSLMVEVE 149 Query: 125 ELIPLLFNSISTVSG--KVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSK 182 I + + S++S K + I +I K L +A M S + +K++L E+ FS+ Sbjct: 150 PNILSIIDDASSLSDSQKAIKYIENNIEKDITLEGLAAHMSMSIATLKRRLAAEDLSFSQ 209 Query: 183 ILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 IL R++ A L + + + IA + G+ S ++F F+ Y +TP F Sbjct: 210 ILKVKRINFAATQLRMSEKSITEIAFESGFKSAAHFSTAFKSVYNMTPKDFRNQ 263 >UniRef50_C6IZ62 Transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IZ62_9BACL Length = 293 Score = 136 bits (344), Expect = 5e-31, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 77/221 (34%), Gaps = 4/221 (1%) Query: 16 IYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRNLGLH 75 ++ + L E + + + + + L + L R Sbjct: 61 FELGERSHRVTAGQAFLAEIPSSHRYYYPQEASAPWEFLFLLFR--PNVVLPLWRKFLSE 118 Query: 76 SKDR-LLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSI 134 + L S P+ L I + P +++ ++ + + + Sbjct: 119 AGAVPYLPEDSAPVRLARMIITDAGAGRITDPYIASSCVYQFVTELARMQVTSQKNKENW 178 Query: 135 STVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD-ENTCFSKILLASRMSMAR 193 + L+ + A+ + ++E + S+ + ++ D L R A Sbjct: 179 PESVKRAAELMESNYAQMISIDQLSEHVGLSKYHLIRRFSDSTGLTPGAYLTRVRTEKAM 238 Query: 194 RLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFA 234 LL + + TIAE+ GYSS SYFI FR+ G+TP +F Sbjct: 239 DLLRGTSLSIETIAERVGYSSGSYFIKAFRRLTGLTPGEFR 279 >UniRef50_A5Z9N2 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A5Z9N2_9FIRM Length = 293 Score = 136 bits (344), Expect = 5e-31, Method: Composition-based stats. Identities = 31/266 (11%), Positives = 77/266 (28%), Gaps = 32/266 (12%) Query: 2 THVCSVILIRRSFDIYHEQQ------------------KISLHNESILLLEKNLADDFAF 43 T++CS+ L +S +++ + +++ ++ + + Sbjct: 24 TYLCSIPLDFKSVNLHWHNEVELIVIKKGQGLVNVNLVTYTVNAGDVVFVFPGQLHSISQ 83 Query: 44 CSPDTRRLDIDEL-----------TVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVT 92 + + L+ Sbjct: 84 KDYSIMEYENILFKSSLLKSSGYDLCNDKFIQPLLSGNLNIYPVINSNFDFHDSLYSLIN 143 Query: 93 AIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTV--SGKVERLISFDIA 150 I ++ + + L + S + + ++ Sbjct: 144 EIDKLCDKRPYAYQLAVKSYLFQIFYLLISNCGLNQIKPISKKALEKIKTILSYVAEHFQ 203 Query: 151 KRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEK 209 + +IA + S+S K ++ F + L R+ +A +LL + IA Sbjct: 204 DNISIEEIAGHCFYSKSYFMKFFKETMGMSFVQYLNDYRLEVAAKLLTTTSDDIINIAIN 263 Query: 210 CGYSSTSYFINTFRQYYGVTPHQFAQ 235 G+ + SYF F++ YG+TP ++ + Sbjct: 264 TGFDNLSYFNRCFKKKYGITPGKYRK 289 >UniRef50_C7H973 Methylphosphotriester-DNA alkyltransferase n=2 Tax=Faecalibacterium prausnitzii RepID=C7H973_9FIRM Length = 271 Score = 136 bits (344), Expect = 5e-31, Method: Composition-based stats. Identities = 32/247 (12%), Positives = 73/247 (29%), Gaps = 18/247 (7%) Query: 4 VCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRL-DIDELTVCHYL 62 +C +IL+ + LL+ ++ I + Sbjct: 32 ICRIILV-------SGGSFTLVRGGESLLVNPGCVLLLGPGGGLLQQAGHIAPELLGCRF 84 Query: 63 QNIRQLPRNLGLHSKDRLLINQSPPMPL---------VTAIFDSFNESGVNSPILSNMLY 113 + L L + + + + Sbjct: 85 PAGVLPVLKNLMQRDFMPLFEPGAQTALYGPVQWSGRLRTLLGMMQSAESEPESPGMIYL 144 Query: 114 LSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKL 173 L + + ++ ++ + +++ L D+A R Y S + + Sbjct: 145 TLILHYVEQECRSEKQDIRPRNETVEQICAYLAANYQQKFSLTDVAARFYLSPYYLSRLF 204 Query: 174 QD-ENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQ 232 + + R+ A+RLLE + + +AE+ G++S ++F FR+ G P Q Sbjct: 205 RRVTGQSIVDYINGRRIEAAQRLLESTDLNISAVAEQTGFASAAHFRRVFRETMGTGPLQ 264 Query: 233 FAQHSPG 239 + + G Sbjct: 265 YRKSHRG 271 >UniRef50_C5RGS5 Transcriptional regulator, AraC family n=1 Tax=Clostridium cellulovorans 743B RepID=C5RGS5_CLOCL Length = 293 Score = 136 bits (344), Expect = 5e-31, Method: Composition-based stats. Identities = 33/228 (14%), Positives = 80/228 (35%), Gaps = 12/228 (5%) Query: 19 EQQKISLHNESILLLEKNLADDFAFC-SPDTRRLDIDELTVCH---------YLQNIRQL 68 + L +LL+ R L+I+ + ++ ++ + Sbjct: 59 NVNNLKLKKGDFILLDAGTVHRLIVLGEKSCRMLNIEFSFIEDSDILTSIRLLIEKVKSI 118 Query: 69 PRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIP 128 + LL + + + I + +L+ L S + Sbjct: 119 ALLFEMRCPFLLLKDNNDIYHSLKNIVIQLGMESEENQFSIQLLFYELLLKISKVA-MSN 177 Query: 129 LLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLAS 187 ++ + K + IS + K ++DI+ + +E + + + ++ + Sbjct: 178 ENTSTSNIYINKAKHFISMNYDKDITIKDISSYVNINEDYLNRIFKKHTGHTITEYVTLF 237 Query: 188 RMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 R+ A+ LL IP+ I G +S YF F++ G++P+++ + Sbjct: 238 RIEKAKMLLSNTDIPIIDICSYVGINSRQYFSQVFKKCTGISPYKYRK 285 >UniRef50_C4Z7U7 LacI family transcriptional regulator n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z7U7_EUBE2 Length = 304 Score = 136 bits (344), Expect = 5e-31, Method: Composition-based stats. Identities = 37/249 (14%), Positives = 88/249 (35%), Gaps = 14/249 (5%) Query: 6 SVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTR-----RLDIDELTVCH 60 +I + + + + + I +L+ NL S + + L ID +C Sbjct: 39 IFYIIEGERQFFFDNKSYNAYAGDIAILDTNLVHTTCSISDEDKGYNRVILYIDYEKMCD 98 Query: 61 YLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSP-------ILSNMLY 113 + + L H+ + ++ ++ + + Sbjct: 99 FDKKYPGLNLVNYFHNNYGIYHLNEDQRIAFLNLYRDLRHELTKKNSGYQSRVEIATIYW 158 Query: 114 LSCLSMFSHKKELIPLLFNSISTVSG-KVERLISFDIAKRWYLRDIAERMYTSESLIKKK 172 L L H I + NS +S + + + K L I++ ++ S+ + + Sbjct: 159 LYKLLSLKHDSTQIHAVINSPKELSASNISAYLEANYTKELALDTISDELFMSKYYMCRI 218 Query: 173 LQD-ENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPH 231 ++ ++ + R+ A ++LE + + +A + G+ S SYF F++ VTP Sbjct: 219 FKEYTGFTITEYVNTLRIKKATQILESSNLSISDVAAELGFESASYFERIFKKIMTVTPL 278 Query: 232 QFAQHSPGT 240 ++ + Sbjct: 279 KYRKTHQSV 287 >UniRef50_A3I6W7 YbbB n=2 Tax=Bacillaceae RepID=A3I6W7_9BACI Length = 523 Score = 136 bits (344), Expect = 5e-31, Method: Composition-based stats. Identities = 39/241 (16%), Positives = 91/241 (37%), Gaps = 5/241 (2%) Query: 2 THVCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHY 61 T+ ILI + + + I L E +++ N + L + +LT Sbjct: 28 TYFSLFILISGNGTLKTNHETIHLMKEKCVIIPPNSHVEIHT---ADEPLCLYQLTFNTI 84 Query: 62 LQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFS 121 + P +L ++ L+ S L+ AI+ ++ ++ + + Sbjct: 85 YLSESHAPTSLFTSVRELRLLPFSQCNKLLEAIYRCRQAKDEHTIFEQHVRFQELMLFIF 144 Query: 122 HKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD-ENTCF 180 + + P+L N +V + + + + W + +AE + +D Sbjct: 145 EQNQPKPILQNDRQSVEQSI-QYLHKYFGRDWTVEQLAELAEVPRWSYSRIFKDITGQIP 203 Query: 181 SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGT 240 L + R+ A++LL + I++ G+++ YF F+++ G++P Q+ + Sbjct: 204 LHYLNSIRIEKAKQLLMTTNDRVFEISQSIGFNNEYYFNRRFKEHVGISPGQYRRSQSNN 263 Query: 241 F 241 Sbjct: 264 V 264 >UniRef50_P32677 Uncharacterized HTH-type transcriptional regulator yijO n=33 Tax=Gammaproteobacteria RepID=YIJO_ECOLI Length = 283 Score = 136 bits (344), Expect = 5e-31, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 54/130 (41%), Gaps = 4/130 (3%) Query: 114 LSCLSMFSHKKELIPLLFNSIST---VSGKVERLISFDIAKRWYLRDIAERMYTSESLIK 170 L S+ SH ++L+ + S + + I A +A+ Y S + + Sbjct: 144 LIVASLLSHCRDLLGSQIQTASRSQALFEAIRDYIDERYASALTRESVAQAFYISPNYLS 203 Query: 171 KKLQDEN-TCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVT 229 Q F++ L +R+ A+ LL+ + + +A CG+ ++YF FR+ + Sbjct: 204 HLFQKTGAIGFNEYLNHTRLEHAKTLLKGYDLKVKEVAHACGFVDSNYFCRLFRKNTERS 263 Query: 230 PHQFAQHSPG 239 P ++ + Sbjct: 264 PSEYRRQYHS 273 >UniRef50_UPI0001788789 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788789 Length = 746 Score = 136 bits (343), Expect = 5e-31, Method: Composition-based stats. Identities = 32/216 (14%), Positives = 72/216 (33%), Gaps = 6/216 (2%) Query: 27 NESILLLEKNLADDFAFC----SPDTRRLDIDELTVCHYLQNIRQLPRNLGLHSKDRLLI 82 + +F + + ++ ID Q + S + Sbjct: 529 RGDVTGFTAEQEHEFYVNLQAGNESSCQMLIDRALERLQRQEATADQLSHFAKSVSVRMR 588 Query: 83 NQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVE 142 + + T + + + L SH + I + V Sbjct: 589 RTVELLKINTDALPDY-ADMLAYSVTPAQYREVLLGELSHATQAIRRKREEHYDIIQYVI 647 Query: 143 RLISFDIAKRWYLRDIAERMYTSESLIKKKLQ-DENTCFSKILLASRMSMARRLLELRQI 201 + + + L +A ++ S + + ++ + FS L A R++ A+ LLE + Sbjct: 648 QYLESHYNEEISLEQLAYKLNMSPTYLSGYIKEKTGSNFSDQLNAIRITKAKELLETTNM 707 Query: 202 PLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 P+ + + GY + + FI F++ G TP + + + Sbjct: 708 PIQEVGNRIGYRNVTSFIRMFKKITGQTPGDYRKTN 743 >UniRef50_C3SIM7 Membrane protein n=86 Tax=Enterobacteriaceae RepID=C3SIM7_ECOLX Length = 283 Score = 136 bits (343), Expect = 5e-31, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 54/130 (41%), Gaps = 4/130 (3%) Query: 114 LSCLSMFSHKKELIPLLFNSIST---VSGKVERLISFDIAKRWYLRDIAERMYTSESLIK 170 L S+ SH ++L+ + S + + I A +A+ Y S + + Sbjct: 144 LIVASLLSHCRDLLGSQIQTASRSQALFEAIRDYIDERYASALTRESVAQAFYISPNYLS 203 Query: 171 KKLQDEN-TCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVT 229 Q F++ L +R+ A+ LL+ + + +A CG+ ++YF FR+ + Sbjct: 204 HLFQKTGAIGFNEYLNHTRLEHAKTLLKGYDLKVKEVAHACGFVDSNYFCRLFRKNTERS 263 Query: 230 PHQFAQHSPG 239 P ++ + Sbjct: 264 PSEYRRQYHS 273 >UniRef50_C6D3K6 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D3K6_PAESJ Length = 277 Score = 136 bits (343), Expect = 6e-31, Method: Composition-based stats. Identities = 42/239 (17%), Positives = 82/239 (34%), Gaps = 14/239 (5%) Query: 6 SVILIRRSFDIYH-EQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQN 64 ++L+ + + + + ++LL + + + R + Sbjct: 39 ELLLVEEGRGTFVVDGKPYEVGPGTVLLYHRGIWHEEWSTHYPFRATYFAFKDL-----Q 93 Query: 65 IRQLPRNLGLHSKDRLLI----NQSPPMPLVTAIFDSFNESGVNSPILSNMLY---LSCL 117 ++ P+N L +I LV + S +N L+ L+ L Sbjct: 94 VKGCPQNYFLGPDQAPVIELGEKTDETASLVRECLAELHSGLAESRAAANHLFGLLLARL 153 Query: 118 SMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE- 176 + + + K I + + L +A+ + S+ + Q E Sbjct: 154 ARLVPGESTERRIVKPAEAAVIKARGYIEENYQQPITLEQLAKVTFVSKYYLSHLFQQEV 213 Query: 177 NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 + L+ RM A+R L + P+ I E GY S F N F++ G+TP QF + Sbjct: 214 GISVIQFLIQCRMEAAKRYLIMTGRPVKEIGELVGYQSEPTFHNLFKKVTGLTPGQFRE 272 >UniRef50_UPI0001969E72 hypothetical protein BACCELL_04741 n=1 Tax=Bacteroides cellulosilyticus DSM 14838 RepID=UPI0001969E72 Length = 291 Score = 136 bits (343), Expect = 6e-31, Method: Composition-based stats. Identities = 28/230 (12%), Positives = 77/230 (33%), Gaps = 11/230 (4%) Query: 17 YHEQQKISLHNESILLLEKNLADDFAFCSPD----TRRLDIDELTVCHYLQNIRQLPRNL 72 ++++ + + F D R +I +L L Sbjct: 43 LIGDMTEPFLGGEVVMIPPEIPHCWYFEDDDTDEQGRIANITVTFDNDFLDRCSGTFPEL 102 Query: 73 GLH-----SKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELI 127 H K + + + + + S + + ++ + + Sbjct: 103 CGHIDKLKKKYDAVKFDKEKSEAIIDLLEEMCNQSEAERVASMIKLILIMADSGSEHVVG 162 Query: 128 P-LLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD-ENTCFSKILL 185 + + +++ + + + L D+A + + + + F L Sbjct: 163 KYQRIDKETKRMNQIQTYVICNAKRDITLDDVARYVGMNRASFCIFFKKATGKTFVTYLN 222 Query: 186 ASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 R+ +A +LL+ +++ + I G+++ YF TF+++ GV+P ++ Q Sbjct: 223 EYRIGLACQLLKQKRMTVSEICYNVGFNNVPYFNRTFKRHKGVSPCEYKQ 272 >UniRef50_Q1ZUP8 Transcriptional regulator, AraC family protein n=1 Tax=Photobacterium angustum S14 RepID=Q1ZUP8_PHOAS Length = 292 Score = 136 bits (343), Expect = 6e-31, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 91/230 (39%), Gaps = 15/230 (6%) Query: 24 SLHNESILLLEKNLADDFAFCSPDTRR------LDIDELTVCHYLQNIRQL-PRNLGLHS 76 + + +LL+ +A F + D + + + + + + + +L + Sbjct: 63 QIEHNELLLIGPGVAHSFESINSDEKNPCEAHVIWFSKEWIANLIYSCAELRTLMPIIRD 122 Query: 77 KDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLS-------MFSHKKELIPL 129 ++ + + V +SF++ + + L LS + S+ + Sbjct: 123 ANKGVRFSTQTAEKVYQHLNSFDDLTPIGQLAVLIQILDELSADQSHTTLLSYAQSEEKE 182 Query: 130 LFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASR 188 N+ + +V + I + L+ +A+ MY SE+ + + N + L R Sbjct: 183 KPNNDFSKIAQVCKYIDKHYSSDITLKKLADYMYVSENTVHRWFIQHFNESYISYLTKLR 242 Query: 189 MSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSP 238 ++ A LL P+ IAE GY++ S F +F++Y G++P + + Sbjct: 243 LNHASNLLITTLQPISLIAESVGYTNRSNFNRSFKKYKGISPSLYRKQFK 292 >UniRef50_P77396 Uncharacterized HTH-type transcriptional regulator ypdC n=61 Tax=Enterobacteriaceae RepID=YPDC_ECOLI Length = 285 Score = 136 bits (343), Expect = 6e-31, Method: Composition-based stats. Identities = 40/234 (17%), Positives = 85/234 (36%), Gaps = 3/234 (1%) Query: 8 ILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQ 67 I++R + E ++ L +L + A+ P + T + Sbjct: 53 IVLRGEYGNLLEAKQQRLVEGEMLFIPARAANLPVNNKPVMLLSLVFAPTWLGLSFYDSR 112 Query: 68 LPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELI 127 L + +L Q + + S + I+ L LS L + + Sbjct: 113 TTSLLHPARQIQLPSLQRGEGEAMLTALTHLSRSPLEQNII-QPLVLSLLHLCRSVVNMP 171 Query: 128 PLLFNSISTVS-GKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENT-CFSKILL 185 P + + + A+ +A+ + + + K T F + + Sbjct: 172 PGNSQPRGDFLYHSICNWVQDNYAQPLTRESVAQFFNITPNHLSKLFAQHGTMRFIEYVR 231 Query: 186 ASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPG 239 RM+ AR +L+ + +H +A++CG+ + YF FR+ +G+TP +++ G Sbjct: 232 WVRMAKARMILQKYHLSIHEVAQRCGFPDSDYFCRVFRRQFGLTPGEYSARFQG 285 >UniRef50_C6VNM4 Transcription regulator n=3 Tax=Lactobacillus plantarum RepID=C6VNM4_LACPJ Length = 341 Score = 136 bits (343), Expect = 7e-31, Method: Composition-based stats. Identities = 36/238 (15%), Positives = 80/238 (33%), Gaps = 11/238 (4%) Query: 7 VILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIR 66 + L++ + ++ + + LH ++L+ N +P+ L + L + Sbjct: 36 LWLLQGTVEVNVDGTRHQLHANDLILINANRGHATFALTPECIALRLHILPD---FYTNQ 92 Query: 67 QLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFN---ESGVNSPILSNMLYLSCLSMFSHK 123 + + G + + Q + I N LY ++ H Sbjct: 93 GIDLSSGAFLLNSVTTPQHRDYQTIRQILAQLYLGLHQQDWPIFDLNALYFQLTNLLHHD 152 Query: 124 ----KELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NT 178 + + +V I+ + L + A+ + S + + + + E Sbjct: 153 FFDTGITMTYPQPKTQSSLNRVIDYINQAYDRPITLNEAAKISHYSPAYLSRIFKAELGL 212 Query: 179 CFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 F + L R+ A LE + +A G+ F F++++G TP + QH Sbjct: 213 NFYEYLTRCRLQHAIYDLENPTTRVADLALANGFQEVKSFNLMFKKHFGQTPSSYRQH 270 >UniRef50_A8RW54 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RW54_9CLOT Length = 517 Score = 136 bits (342), Expect = 7e-31, Method: Composition-based stats. Identities = 40/175 (22%), Positives = 67/175 (38%), Gaps = 7/175 (4%) Query: 65 IRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNE--SGVNSPILSNMLYLSCLSMFSH 122 IR + L + L P L ++ D+ + N +++ L LS + Sbjct: 346 IRTAVSAILLETIRTLRTAGGKPEDLFLSVSDTITAVLNESNPALMARKLREILLSASVY 405 Query: 123 KKELIPLLFNSISTVSGKVERLISFDIAK-RWYLRDIAERMYTSESLIKKKLQDE-NTCF 180 L L N +V K + I + L D+A +Y + S E F Sbjct: 406 ISRLEKLRPN---SVVQKARKYIEENYWNPDLRLDDVAGYVYINASYFSSVFSKEMGISF 462 Query: 181 SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 L R+ A LL+ + ++ IA+ GY + S+F F++Y G P F + Sbjct: 463 GDYLTKVRIEKAMDLLKNTHMKIYEIADLVGYQNPSWFNVAFKRYTGQKPGDFRK 517 >UniRef50_UPI0001C36936 two component transcriptional regulator, AraC family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36936 Length = 527 Score = 136 bits (342), Expect = 7e-31, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 51/135 (37%), Gaps = 1/135 (0%) Query: 106 PILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTS 165 + S + + S S V + I ++ L+ +AE +Y Sbjct: 384 SMKSRHRIQDIAREYLASTAPLIESAKSRSPVIDRALVYIREHYSENITLQSLAEDIYLH 443 Query: 166 ESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQ 224 + + +++ F + L R+ MA+ L + ++ I + GY + YF F++ Sbjct: 444 PVYLSRLFKEKVGQTFLEYLTHYRIEMAKDYLRNPNLRIYDIGQMVGYETPQYFSRVFKE 503 Query: 225 YYGVTPHQFAQHSPG 239 G TP F + G Sbjct: 504 LTGTTPKGFREELAG 518 >UniRef50_B2HYH2 AraC-type DNA-binding domain-containing protein n=16 Tax=Acinetobacter RepID=B2HYH2_ACIBC Length = 336 Score = 136 bits (342), Expect = 7e-31, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 75/208 (36%), Gaps = 2/208 (0%) Query: 32 LLEKNL-ADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPL 90 L+ K L D F S + + L R D P+ Sbjct: 126 LIPKTLDPDHFITESMLMIWHGLASWLIERRLPLERVHFSYPRPAHADEYDALFFAPVMQ 185 Query: 91 VTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIA 150 A + + + + + F + ++++ ++ ++ I Sbjct: 186 FDAPRTEITFAADYLDLPIRQDEKTLEEFLKAAPAQLLVKFKNTNSLTSRIREVLKSQIG 245 Query: 151 KR-WYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEK 209 + L D+A +Y S ++++L E + + A R A LL ++ L +A++ Sbjct: 246 EEMPTLNDVASMLYLSPQTLRRRLAAEGKSYQGVKDALRRDAAIHLLLNPELTLEDVAQQ 305 Query: 210 CGYSSTSYFINTFRQYYGVTPHQFAQHS 237 G+S TS F F+++ GVTP + Q Sbjct: 306 VGFSETSTFHRAFKKWTGVTPGLYRQLH 333 >UniRef50_C6J1Q8 Two component transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J1Q8_9BACL Length = 542 Score = 136 bits (342), Expect = 7e-31, Method: Composition-based stats. Identities = 36/206 (17%), Positives = 90/206 (43%), Gaps = 6/206 (2%) Query: 32 LLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLV 91 LL +N + F + R +D T+ + +L +++ +L ++ + Sbjct: 329 LLHQNDSASFLAETARYLRDCLDRKTLDTSCLALFRLDIVQLVYAFLKLKGIEAHKLYAA 388 Query: 92 TAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAK 151 A +S + + + + +++ +V+ ++++ I Sbjct: 389 RANEQLLAQSLHSIEDMQEYVTYLVNTAMAYRDFAAE-----PKSVAEEIKQYIHAHYGD 443 Query: 152 RWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKC 210 D+AE +Y + + + + E ++ R+S+A++LLE ++ ++ +A + Sbjct: 444 ELTRNDLAEVVYLNPDYLARLFKKETGISLGSYVIQVRISVAKQLLETTKLSVYAVANQV 503 Query: 211 GYSSTSYFINTFRQYYGVTPHQFAQH 236 GY++ SYF F+Q GVTP+++ ++ Sbjct: 504 GYANYSYFSKLFKQEVGVTPNEYKKN 529 >UniRef50_Q5E3W4 Transcriptional regulator, AraC family n=1 Tax=Vibrio fischeri ES114 RepID=Q5E3W4_VIBF1 Length = 284 Score = 136 bits (342), Expect = 7e-31, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 88/231 (38%), Gaps = 20/231 (8%) Query: 25 LHNESILLLEKNLADDFAFCSPDTR-----RLDIDELTVCHYLQNIRQLPR--NLGLHSK 77 + ++ L+ + + + + V + + + +L R L S Sbjct: 57 IEKNTLWLIPPKMPHAIELLEEKELQCESHIIWLPKEWVENMIFSCTELRRMGELFKRSS 116 Query: 78 DRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTV 137 + L + S + I F +S ++ + L KE PL S Sbjct: 117 NGLCFSTSTAEKVYQLIEKLFKDSILD----DLGYLIQILGCLCSDKETRPLQLFSKQEA 172 Query: 138 SGK--------VERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASR 188 S K V + I + L ++AE + TSES I + Q FS+ L R Sbjct: 173 SDKEGKEKIDLVCQYIDDNYQNSITLLNVAEHLCTSESTIHRLFQSHFGESFSQYLKKLR 232 Query: 189 MSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPG 239 ++ A LL ++P+ +AE+ GY + + F F+ Y +TP+Q+ + Sbjct: 233 LNHAANLLTHSRLPIGIVAEQVGYRNQTNFNRLFKDYKQLTPNQYRKKFSS 283 >UniRef50_A8RUC8 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RUC8_9CLOT Length = 479 Score = 136 bits (342), Expect = 7e-31, Method: Composition-based stats. Identities = 35/207 (16%), Positives = 74/207 (35%), Gaps = 3/207 (1%) Query: 34 EKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRNLGLHSKDR-LLINQSPPMPLVT 92 E ++ F D +R+ ++++ + R +L + Sbjct: 272 EAGELNEDVFFKKDLQRMLCGGDFDGCRKILLKKISQMQANACHPRHILAAAVSGLVKFD 331 Query: 93 AIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKR 152 + + + +C+ + + P S + K +I + Sbjct: 332 SKQAYLEAVNQMAAARTMHEIRTCIDSYYETCKGRPA-SAGYSPLIQKALHVIDKSYKEP 390 Query: 153 WYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCG 211 L +AE++ + + + E + F L + RM A+ LL+ + ++ I + G Sbjct: 391 ISLNSVAEQLNITPQYLSRLFMKEMSRSFVDYLTSYRMERAKSLLQDTNMKINMICVQVG 450 Query: 212 YSSTSYFINTFRQYYGVTPHQFAQHSP 238 Y YF F++ GVTP+Q+ SP Sbjct: 451 YQDAKYFCTLFKKITGVTPNQYRASSP 477 >UniRef50_Q65NG7 Putative uncharacterized protein n=1 Tax=Bacillus licheniformis ATCC 14580 RepID=Q65NG7_BACLD Length = 400 Score = 136 bits (342), Expect = 9e-31, Method: Composition-based stats. Identities = 41/207 (19%), Positives = 84/207 (40%), Gaps = 20/207 (9%) Query: 33 LEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVT 92 L++ + F D D L +++ + + + ++ Sbjct: 203 LKEKVERFFINERDKAVFFDGDRLIAACLWRSVTEAEQRALAE------MIKAELQASAA 256 Query: 93 AIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAK- 151 F E+G ++P + H ++ + FN IS V + + + + Sbjct: 257 VCFAKLAENGRSAP-----------QCYQHCRQQVSKAFN-ISPVVIRAKEYMQKHFTER 304 Query: 152 RWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKC 210 + L+ +A+ + S + + ++ E F ++L RM A LLE + +H IAE+ Sbjct: 305 EFSLKQMADALQVSSVYLSRMMKKELGVTFVQLLTEMRMDQAVHLLETTPLSIHDIAEQT 364 Query: 211 GYSSTSYFINTFRQYYGVTPHQFAQHS 237 GY + YF F++ GV+P+Q+ + S Sbjct: 365 GYDTQHYFSTVFKKTMGVSPNQYRRMS 391 >UniRef50_UPI0001B9ED63 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001B9ED63 Length = 287 Score = 135 bits (341), Expect = 9e-31, Method: Composition-based stats. Identities = 39/238 (16%), Positives = 88/238 (36%), Gaps = 11/238 (4%) Query: 9 LIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFC---SPDTRRLDIDELTVCH---YL 62 L+ + +++ S+ ++L+ K + + ++ + + L Sbjct: 45 LVSGERHYFIKEKLYSIRAGDLILINKFDVHKTSGHGDPEHERIVINFSDSFLGKGHPLL 104 Query: 63 QNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSH 122 + N + Q+ M ++ + D E + + +L L Sbjct: 105 ASGLLGMFNQDRPLLRLTVPEQAIIMQILNKMADEIRERSASYEHMLQVLLTELLIKTYR 164 Query: 123 KKELIPLLFN-SISTVSGK---VERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD-EN 177 L N S++ + K V + I A + L+ ++E Y S + + ++ Sbjct: 165 LTHSASLPANVSMNPLHQKITDVVKFIHVHYADKITLQGLSETFYISPFYLSRIFKEITG 224 Query: 178 TCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 L +R+ A+RLL + + IAE G+ S ++F TF++ +T Q+ + Sbjct: 225 FTIINYLNLTRIREAQRLLTDTDLKIVDIAESIGFESLTHFDRTFKKIMNMTASQYRK 282 >UniRef50_Q1N3I2 AraC-type DNA-binding domain-containing protein n=1 Tax=Bermanella marisrubri RepID=Q1N3I2_9GAMM Length = 338 Score = 135 bits (341), Expect = 9e-31, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 64/152 (42%), Gaps = 2/152 (1%) Query: 89 PLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFD 148 L + + + + + + N+ ++++ ++ R++ + Sbjct: 184 RLFQRPQTALHFKSSYLDLPIVRTRNDLPELLKEAPYVFLVKPNNTTSINAQIRRILQGN 243 Query: 149 I--AKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTI 206 + ++ +A ++ TS ++++L++ENT F I R MA L I ++ I Sbjct: 244 MDDSELPDFETVAHKLNTSTQTLRRRLKEENTSFQAIKDQVRRDMAIYYLGDPNISINEI 303 Query: 207 AEKCGYSSTSYFINTFRQYYGVTPHQFAQHSP 238 A K G++ S F F+++ G+TP + Sbjct: 304 ALKVGFTEPSTFHRAFKKWTGMTPGDYRSEQA 335 >UniRef50_C6CZ23 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ23_PAESJ Length = 522 Score = 135 bits (341), Expect = 9e-31, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 67/193 (34%), Gaps = 3/193 (1%) Query: 48 TRRLDIDELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVT-AIFDSFNESGVNSP 106 LD E+ +Y ++ + L + ++ + + + Sbjct: 328 DYLLDHLEVFKTNYTTDVFEFKSFLSNVIFNITVLLGNMNYGTQQLETKKYYYFKAIEES 387 Query: 107 ILSNMLYLSCLSMFSHKKE-LIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTS 165 +N + K + S + ++ I A+ L ++A+ + + Sbjct: 388 RNANTAAELLTAFIGEAKLCIAEKAEQSGNANMKRLLDYIHEHYAESLNLTEMAKHFHFN 447 Query: 166 ESLIKKKLQ-DENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQ 224 S + N F L R+ A LL + + I+ GYS SYF F++ Sbjct: 448 PSYLSSYFSTHHNEGFVDYLHRVRLEKASELLRAGEASISEISGMVGYSDHSYFCKVFKK 507 Query: 225 YYGVTPHQFAQHS 237 + G++P ++ Q + Sbjct: 508 HTGLSPSRYRQQN 520 >UniRef50_C4ZAF9 2-isopropylmalate synthase n=2 Tax=Eubacterium RepID=C4ZAF9_EUBR3 Length = 292 Score = 135 bits (341), Expect = 9e-31, Method: Composition-based stats. Identities = 32/247 (12%), Positives = 86/247 (34%), Gaps = 17/247 (6%) Query: 6 SVILIRRS-FDIYHEQQKISLHNESILLLEKNLADDF-----------AFCSPDTRRLDI 53 +I +++ + + + ++ + Sbjct: 41 EIIYVKQGKLHVTISGENYIGSPKDAFVVSPGSLHLMGSPTGDADYYTFLFPLEYISFQT 100 Query: 54 DELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAI----FDSFNESGVNSPILS 109 D+L L +++ + D + + I + + + + + + Sbjct: 101 DDLMEKSILSPLKRGRLMISPQINDTAADICERLIEINEQISGKNAEKTDAANIEAQFET 160 Query: 110 NMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLI 169 + + + ++ N +T ++ I + + L++ + + SE I Sbjct: 161 KITLIKFIRKMWRNGLILENGTNGTNTTEKEMITYIRQNYTREISLKEFGAQFHLSEKYI 220 Query: 170 KKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGV 228 + ++ + S+ + R+ AR+LLE + +A GY + SYFI +F++ YGV Sbjct: 221 SRYFKEHFHITLSQYVNHLRLEHARQLLEESTASVTEVAMCSGYQNVSYFIRSFKKMYGV 280 Query: 229 TPHQFAQ 235 +P ++ Sbjct: 281 SPLKYRN 287 >UniRef50_C6D3K3 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D3K3_PAESJ Length = 296 Score = 135 bits (341), Expect = 9e-31, Method: Composition-based stats. Identities = 37/217 (17%), Positives = 71/217 (32%), Gaps = 3/217 (1%) Query: 19 EQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRNLGLHSKD 78 + + + + E + F + I L + + + + Sbjct: 68 GTETLRIQAGQAFMTEIPGDHRYYFPPDGSHWSFIFVLIRPSLILPNWEEVKKQLGDTP- 126 Query: 79 RLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVS 138 L S P+ L+ ++++ + V P ++ +S Sbjct: 127 -FLPAGSRPIRLLQSMYEEAHAGRVKEPYTASSYVYQFISELCRFALAPQEDAKEWPLKV 185 Query: 139 GKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLE 197 + I L +A+++ S+ + + + L R+ A RLL+ Sbjct: 186 KEAVSYIDAHYENMISLDQLADQLSLSKYHLLRLFTRTVGMSPNDYLNQVRIKEAIRLLK 245 Query: 198 LRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFA 234 + IAE+ GYS SYFI FR+ G TP F Sbjct: 246 ESDWSVERIAEQVGYSGGSYFIKWFRKITGETPGSFR 282 >UniRef50_C0EIK7 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EIK7_9CLOT Length = 343 Score = 135 bits (341), Expect = 9e-31, Method: Composition-based stats. Identities = 44/249 (17%), Positives = 80/249 (32%), Gaps = 18/249 (7%) Query: 6 SVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDI--DELTVCHYLQ 63 + + F E Q I +++LL +I V Sbjct: 84 MSYVYKGQFYNRVENQDIEQKENTLVLLSPRAVHSCYIREKTDIVFNILIKRSLVEKIFL 143 Query: 64 NIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDS--------FNESGVNSPILSNMLYLS 115 + + D + LV + E NM+ Sbjct: 144 RMFSEESAVSRFFLDSIYNIHQKKPYLVFHCNEELVSLVHGIIREHFDQKLFSQNMIIAK 203 Query: 116 CLSMFSHKKELIPLLFNSISTV------SGKVERLISFDIAKRWYLRDIAERMYTSESLI 169 + +FS L + S + ++ I + + L +AE S S + Sbjct: 204 LIELFSELSRLFQITLQGESPLPETSSNISEILDYIENNYS-SVTLTSVAEHFNYSPSYV 262 Query: 170 KKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGV 228 + ++ N F+ I+ ++ A R L +P+ + E GYS S+F F+Q YG+ Sbjct: 263 SRIIKTHLNQSFASIVHNKKLENACRYLSASDLPVEQVIEIVGYSDVSHFYKIFKQKYGL 322 Query: 229 TPHQFAQHS 237 +P Q+ S Sbjct: 323 SPRQYRTQS 331 >UniRef50_C6IVE2 Response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IVE2_9BACL Length = 215 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 1/97 (1%) Query: 142 ERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDEN-TCFSKILLASRMSMARRLLELRQ 200 I + L ++ + + S + N FS+ L R++ A+ LL Sbjct: 114 LDYIEEHYGEPLTLSSLSRHFHFNPSYLSSYFSAHNDEGFSEYLNRVRIAKAKELLRSDG 173 Query: 201 IPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 +P+ I + GYS SYF F++ G++P ++ + Sbjct: 174 LPISEIGSRVGYSDPSYFTKVFKKQMGLSPREYRRQQ 210 >UniRef50_A9KQP4 Two component transcriptional regulator, AraC family n=2 Tax=Clostridiales RepID=A9KQP4_CLOPH Length = 533 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 42/237 (17%), Positives = 83/237 (35%), Gaps = 17/237 (7%) Query: 1 MTHVCSVILIRRSFDIYHEQQKIS-LHNESILLLEKNLADDFAFCSPDTRRLDIDELTVC 59 + C + + I E+ + + L + F + T Sbjct: 308 LPLTC---VYEEDYPIIIEKTIFEAIQKGDVKLAVTSTHQFF----------EWMVKTYP 354 Query: 60 HYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSM 119 + +I+ L ++ N + D + L+ + Sbjct: 355 DCMTDIKLKVIEFVLWAEHIAYENGGMIYEFRSR-RDYLPTIVEIEQYDALRLWFAERIE 413 Query: 120 FSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NT 178 + + SISTV K + I + K L +++ ++ S K ++E T Sbjct: 414 IACRNVENKKKVTSISTV-EKAKLYIRDNYQKDLSLEEVSRQVDISPYYFSKVFKEETGT 472 Query: 179 CFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 F L RMS+A++LL + + I GYS +YF +F++ G+TP ++ + Sbjct: 473 NFIDYLTELRMSVAKQLLLESERSMKEIGIMVGYSDPNYFSRSFKKNIGITPTEYKE 529 >UniRef50_C0EDI6 Putative uncharacterized protein n=2 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EDI6_9CLOT Length = 371 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 38/254 (14%), Positives = 89/254 (35%), Gaps = 22/254 (8%) Query: 7 VILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDI------------- 53 V ++R S + ++I L L+ N D ++ Sbjct: 112 VYVVRGSMKNVVDGRRILLEQGDFCLMNPNAVHQVETDGKDPLAINFLMKKELFNKAFLS 171 Query: 54 ----DELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILS 109 +EL ++ +I + + + IF + + S + Sbjct: 172 IVLENELFANFFVDSIYHKKNKQNYLVFSARHLEEPIISQYLLQIFREYENDQLYSQRVI 231 Query: 110 NMLYLSCLSMFSH---KKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSE 166 F+ ++ L + K+ +S + L+ A++ Sbjct: 232 ESAMSCLFVEFTRSYKRELEFESLQDLPGGNISKIISYLSENYRTA-TLQTTAKQFNYHP 290 Query: 167 SLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQY 225 + L+ FS+I+ R++ A LL+ ++P+ +A++ GY++ +YF F+Q Sbjct: 291 KYLPNLLKKYLGQSFSEIVQQFRLAHACELLKQTELPISDVAQESGYTNRTYFYKVFQQK 350 Query: 226 YGVTPHQFAQHSPG 239 +G++P+ + + Sbjct: 351 FGMSPNDYRHQNQA 364 >UniRef50_C0ERJ9 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0ERJ9_9FIRM Length = 294 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 43/265 (16%), Positives = 94/265 (35%), Gaps = 32/265 (12%) Query: 2 THVCSVILIRRSFDIYHEQQ------------------KISLHNESILLLEKNLADDFAF 43 T++CS+ L +S +++ + S+ I+ + + Sbjct: 29 TYLCSIPLDFQSVNLHWHDEVEIIVIKKGSGIVSVDLTTYSVSAGDIIFVLPGQLHAISQ 88 Query: 44 CSPDTRRLD-------IDELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFD 96 + + + + + + P G + ++ NQ+P P V + Sbjct: 89 KDNEIMEYENILFKSSLLKSSGYDLCNDKFIQPLFSGSLNICPVINNQTPYYPPVITAIN 148 Query: 97 SFNESGVNSPI-----LSNMLYLSCLSMFSHKKELIPLLFNSIS-TVSGKVERLISFDIA 150 + P + L+ ++ S+ + N S + I+ + Sbjct: 149 EIDHLCDLRPYAYQLSIKAHLFQILYTLVSNCGQNKIKPINQKSLKKIKTILSYIANNFQ 208 Query: 151 KRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEK 209 + + DIA + S+S K ++ F + L R+ +A LL + IA Sbjct: 209 ENIAIEDIANYCFYSKSYFMKFFKETMGVSFIQYLNDYRLEIAAELLTTTTDNILDIAFA 268 Query: 210 CGYSSTSYFINTFRQYYGVTPHQFA 234 G+++ SYF F++ YGV+P ++ Sbjct: 269 TGFNNISYFNRCFKKKYGVSPRKYR 293 >UniRef50_C4ZGK8 Two-component response regulator n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4ZGK8_EUBR3 Length = 285 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 41/245 (16%), Positives = 79/245 (32%), Gaps = 11/245 (4%) Query: 6 SVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFA-FCSPDTRRLDIDELTVCHY--L 62 ++ + + + + L+ I+ + + + L I+ V L Sbjct: 41 IIMPLEGGYTVQIGDDLVHLNENDIIFIASGVKHRLIAPDTGKRLILQIEWSAVSKIKEL 100 Query: 63 QNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSH 122 +I L + + S L+ I + + S + L L + Sbjct: 101 NSILTLIAPAITLTPETSGDIHSNIRKLLLDISNEYQTDSFLSEAVIYSKILEVLVLIGR 160 Query: 123 KKELIPLLFN----SISTVSGK---VERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD 175 FN + + I + L +IA+ S+ + + Sbjct: 161 HHTASSCHFNVGRHKQQEYLERFLSICEYIDTHCTEDITLDEIAKIAGFSKYHFTRLFKQ 220 Query: 176 -ENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFA 234 N F K L R+ +A LL I + A + G+++ S FI F+ G TP +F Sbjct: 221 FTNNTFYKYLNQKRIELALTLLADPNISVTETAMQSGFANPSTFIRVFKTEKGCTPTEFR 280 Query: 235 QHSPG 239 + G Sbjct: 281 KMFIG 285 >UniRef50_C9RT55 Two component transcriptional regulator, AraC family n=4 Tax=Bacillales RepID=C9RT55_GEOSY Length = 259 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 65/163 (39%), Gaps = 11/163 (6%) Query: 80 LLINQSPPMPLVTAIFDSFN--ESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTV 137 L+ L A+ + + E ++ ++ ++ + Sbjct: 104 YLLKPVKKSELFEAVERAIHVSEQKERERVMKQLIDDKLINALDRHPQTREP-------- 155 Query: 138 SGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLL 196 + + I + L+D+AE ++ + S +++ FS+ L RM A+ LL Sbjct: 156 IREAIQFIDQRLKDDISLKDVAEHVHLNPSYFSTLFKEQMQLTFSEYLTRRRMQRAKELL 215 Query: 197 ELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPG 239 + + IAE+CGY + YFI+ F++ G TP + + G Sbjct: 216 MTTDMTVAEIAEECGYRTAKYFIHLFKEMEGKTPSSYRKSQKG 258 >UniRef50_C6CWF4 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CWF4_PAESJ Length = 451 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 2/123 (1%) Query: 118 SMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE- 176 + S + + V K ++ I + L + AE ++ + K + + Sbjct: 329 YVISALQRIREQREQQTINVMDKAKQYIGLHFTEELSLEETAEHVHLNPHYFSKVFKQQV 388 Query: 177 NTCFSKILLASRMSMARRLLELRQ-IPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 F L R+ A++L+ + L + + GY +YF F++ G+TP ++ Sbjct: 389 GATFIDYLTGLRIEKAKQLISSADELALKEVCFEVGYKDPNYFSRVFKRVTGLTPTEYRS 448 Query: 236 HSP 238 + Sbjct: 449 QAK 451 >UniRef50_B0P6G3 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P6G3_9FIRM Length = 532 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 69/182 (37%), Gaps = 7/182 (3%) Query: 55 ELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYL 114 L + Y + +L L ++ L P A E+ + L L Sbjct: 348 RLPIGQYQLYLMELTAELVRLARAYQLDTADVFGPDFAASLRL--EAFDSLDELKARLSE 405 Query: 115 SCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAK-RWYLRDIAERMYTSESLIKKKL 173 CL + + + NS ++ ++ I+ + + + + ++ S + Sbjct: 406 LCLRI---SELIRRERSNSTRGIAEGAKQFIAEHFSDPDISVEMLCDHLHVSPAYFSTLF 462 Query: 174 QDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQ 232 + E F L RM A +LL + + I+ K GY+ +YF F++ +G++P + Sbjct: 463 KKETGMSFVAWLTNVRMDEAVKLLSTTEDKTYEISLKVGYTEPNYFSYVFKKQFGMSPTK 522 Query: 233 FA 234 + Sbjct: 523 YR 524 >UniRef50_B8I1I4 Transcriptional regulator, AraC family n=2 Tax=Clostridium RepID=B8I1I4_CLOCE Length = 285 Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 83/234 (35%), Gaps = 10/234 (4%) Query: 8 ILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQ 67 I++ F + + + +I+++ + + S LT H+ + Sbjct: 41 IVLSGYFKYIIDDKLYEVAKGNIIIINPGVQHEKIIPSGVKVEEFNYGLTNIHFKELPEN 100 Query: 68 LPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSH----- 122 L + Q + + + ++ + + ++ Sbjct: 101 FLIEPSSLPVFTLPLYQPEIIKCINETINEQEKNEPYCDLFIKSSIMKLTALLHRGMTAN 160 Query: 123 ----KKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-N 177 +K + + + + + + +S + ++ L IA MY S I K ++E Sbjct: 161 KERTEKTRLDIQTSEKTNIVNDILEYLSTNYMEQISLYRIAHNMYLSPVYISKIFKEETG 220 Query: 178 TCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPH 231 L+ R++ AR LL +P+ T+A GY YF +++YYG+ P Sbjct: 221 ESPINHLIRIRLTKARELLMSGNMPIKTVARSVGYEDAFYFSKLYKKYYGIPPS 274 >UniRef50_C6J2H9 Response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J2H9_9BACL Length = 535 Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 71/198 (35%), Gaps = 5/198 (2%) Query: 43 FCSPDTRRLDIDELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNE-- 100 + T LD + Y+ + + LLI+ M + + E Sbjct: 334 LRNGSTEVLDRIAGELKSYIGGLDERQACASEKLMHYLLIHLLREMRELHMLPREQEEGL 393 Query: 101 -SGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIA 159 + P+ L +S+ H + + S + + I + + + + DIA Sbjct: 394 WKRLREPMSLKELLSIIVSLIEHARSSLSA-KKSTELLMMSAQNYIQNHLGRDFGIEDIA 452 Query: 160 ERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYF 218 + + S S ++ F + L RM MA+ LL + + I GY YF Sbjct: 453 DYLGISSSYFCLLFKNHFGETFVEYLTKQRMEMAKCLLRTSERSIAQIGSSIGYQERRYF 512 Query: 219 INTFRQYYGVTPHQFAQH 236 F++Y G+TP + Q Sbjct: 513 TKVFQKYTGMTPSDYRQK 530 >UniRef50_C6IY72 Response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IY72_9BACL Length = 413 Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats. Identities = 33/192 (17%), Positives = 75/192 (39%), Gaps = 4/192 (2%) Query: 46 PDTRRLDIDELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNS 105 +I + Y + I + P L + + + + + + Sbjct: 213 YSFAVENIAAEVLASYPKTIFRDPFGLIVVLLWG--VEAEADFYRIETLVRTHLKIAAEV 270 Query: 106 PILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKR-WYLRDIAERMYT 164 + + L K + N++S + + ++ + + L +A+ + T Sbjct: 271 YLAEGAGDVLELPSVYRKAKSAVNKENAVSPLVRRAKQYMLEHFSNSGLTLEAMAQALQT 330 Query: 165 SESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFR 223 S + + + ++ E T F+ L R+ A RLL ++ + IAE+ GY + YF F+ Sbjct: 331 SPAYLSRMIKQELGTTFNSYLTQLRIRRASRLLIATELTIAEIAEQVGYETQHYFSTAFK 390 Query: 224 QYYGVTPHQFAQ 235 + G++P Q+ + Sbjct: 391 RATGLSPLQYRK 402 >UniRef50_Q1ZVW8 Putative transcriptional regulator, AraC/XylS family protein n=3 Tax=Vibrionaceae RepID=Q1ZVW8_PHOAS Length = 292 Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats. Identities = 47/250 (18%), Positives = 97/250 (38%), Gaps = 20/250 (8%) Query: 8 ILIRRSFDIY--HEQQKISLHNESILLLEKNLADDFAFCS------PDTRRLDIDELTVC 59 +LI R+F + S++L+ N+ S +T + + + Sbjct: 39 LLIHRNFRSRCHIGHYQGDFEQASMILIAPNVPHGIESISTPDTKDYETIVVWFKQDWIA 98 Query: 60 HYLQNIRQLPR-NLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLS 118 + + + ++L + + L ++ L+ V I + +E + L L + Sbjct: 99 NMMFSCQELRKVDSLLKRAEKGLLFSPETTQKVITIVKTIDEKHFDPINLLANL-IHIFE 157 Query: 119 MFSHKKELIPLLFNSISTV---------SGKVERLISFDIAKRWYLRDIAERMYTSESLI 169 + K LL +++ + ++ I A+ L +A + TSES I Sbjct: 158 VLCQDKSSQTLLSHNVESKNHDHCNKEKIERLCAFIDQHYAEPLTLEYVANFICTSESTI 217 Query: 170 KKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGV 228 + + N F + L R++ A LL P+ +AE+ GY + + F F+QY + Sbjct: 218 HRLFEQHFNETFIQYLKKLRLNHASELLVSSSEPISHVAEQVGYRNQANFNRQFKQYKNM 277 Query: 229 TPHQFAQHSP 238 TP ++ + Sbjct: 278 TPREYRRTYK 287 >UniRef50_C6JD25 Response regulator receiver protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JD25_9FIRM Length = 519 Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats. Identities = 36/240 (15%), Positives = 81/240 (33%), Gaps = 11/240 (4%) Query: 12 RSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRN 71 E +K ++ + + +N F + R + I + Y+ Sbjct: 280 NDARYLLEHEKKNIQDIIQTMGAQNKKKIFWEIYAELRNIMISNIGTPDYVLKAFNTFIK 339 Query: 72 LGLHSKDRLLINQSPPMPLVTAIFDSFNE----------SGVNSPILSNMLYLSCLSMFS 121 + + +++ S+ E ++ + S +C Sbjct: 340 ATESYNLSPSAVRRCCFEIASSLIFSYMEVSCEVEEGKLDALSKSLSSAGKEEACEITRM 399 Query: 122 HKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD-ENTCF 180 ++LI + I +A+ + IAE +Y + + + + Sbjct: 400 FIEQLIENDEEDVHYTISNARHYIDEHLAEDISVSSIAESLYITPNYFSRLFKRITGEGC 459 Query: 181 SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGT 240 ++ ++ R+ A+ LLE I IA GY T+YF F+++ G +P ++ + T Sbjct: 460 NEYIVRKRIEKAKSLLETTSIKTGKIAMMVGYRDTNYFSLAFKKHTGKSPTKYREEMQNT 519 >UniRef50_A8SQN1 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A8SQN1_9FIRM Length = 294 Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats. Identities = 41/249 (16%), Positives = 91/249 (36%), Gaps = 17/249 (6%) Query: 6 SVILIRRS-FDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHY--- 61 +I I++ ++ + + I+++ + + + +V + Sbjct: 45 EIIYIKKGKGNVTVDFTTHYVEEGDIIIILPGHIHGISQHEGYSMEYENILFSVDMFRSK 104 Query: 62 ----LQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCL 117 L + LP G + P P +++ + ++ +P ++ C Sbjct: 105 NHDSLDSEFFLPLLAGDVDIKSIYDKDDPLYPQLSSCLNRVDKLCSETPKGYHLALKGCY 164 Query: 118 SMFSH--------KKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLI 169 F + + E + + + I + + + DIA SES Sbjct: 165 FEFFYVLFTNSTVRDEADRKNRSRDLERTKLILSYIDENYKEAISITDIASYCGFSESHF 224 Query: 170 KKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGV 228 + ++ F L R+++A RLL + ++AE CG+ + SYF F++ YGV Sbjct: 225 MRFFKNTMGVSFVSYLNDFRLNVAARLLSTNDDSVLSVAENCGFFNLSYFNRMFKKKYGV 284 Query: 229 TPHQFAQHS 237 TP ++ + Sbjct: 285 TPSRYRETH 293 >UniRef50_D1PME6 Transcriptional regulator, AraC family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PME6_9FIRM Length = 323 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 39/244 (15%), Positives = 89/244 (36%), Gaps = 16/244 (6%) Query: 10 IRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIR--- 66 I + + E ++ S++++ +N A D+ I YL+ + Sbjct: 77 IAGTCRYFVEGAAYIVNAGSVVMIGENQIHKTASL-GDSPSSRIVVNFSREYLEKVAAAF 135 Query: 67 ---QLPRNLGLHSKDRL----LINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSM 119 L L + Q+ ++ + D E+ L ML + L Sbjct: 136 PEVDFFSFLTDERNHLLSAITVKQQNHIQSILQQMLDLEGETSPEDQALRAMLLATLLLE 195 Query: 120 FS----HKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD 175 ++ + + +++ I+ A++ L IA + Y S + + + Sbjct: 196 LKALCVQQQCQGGEKGRVSNHIVEQIQAYIAQHYAEKLTLTGIASQFYISPYYLSRLFKK 255 Query: 176 -ENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFA 234 N + + R+ A+ L+E + ++A + G+ +T++F F+ G++P Q+ Sbjct: 256 STNLSLIEYINGVRIKAAQNLIEKSGESISSVAGQTGFMTTAHFRRVFKDATGLSPQQYR 315 Query: 235 QHSP 238 Q Sbjct: 316 QQYK 319 >UniRef50_B5FRI8 AraC family regulatory protein n=32 Tax=Enterobacteriaceae RepID=B5FRI8_SALDC Length = 291 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 56/212 (26%), Positives = 97/212 (45%), Gaps = 8/212 (3%) Query: 30 ILLLEKNLADDFAFCSPDTRRLDIDEL-------TVCHYLQNIRQLPRNLGLHSKDRLLI 82 I L + + + ++ EL +L L + LL Sbjct: 67 IFLAKDQTIHITMEETHEQLNYNLIELDSASIKNAYNFFLYEHADFSDPLTKPTTKHLLA 126 Query: 83 NQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFN-SISTVSGKV 141 + V + S N+S S L LS F ++ E L S +T++ + Sbjct: 127 PIETGVARVFNLLHSSNKSQKLSQDKKEYLIRFLLSEFIYEPEAFALFRELSQNTLAENI 186 Query: 142 ERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQI 201 +I DI+++W L+DI++ +Y S S +K+KL+ E+T FS++ L +RM+ A +LL + Sbjct: 187 YNIIISDISRKWALKDISDSLYMSCSTLKRKLKQEHTSFSEVYLNARMNKATKLLRNSEY 246 Query: 202 PLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 + +A CGY S SYF F++++ TP +F Sbjct: 247 NITRVAYMCGYDSASYFTCVFKKHFKTTPSEF 278 >UniRef50_O31522 HTH-type transcriptional regulator yesS n=2 Tax=Bacillus subtilis RepID=YESS_BACSU Length = 761 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 42/250 (16%), Positives = 84/250 (33%), Gaps = 25/250 (10%) Query: 15 DIYHEQQKISL-HNESILLLEKNLADD--FAFCSPDTRRLDIDELTVCHYLQNIRQLPRN 71 D+ + + + + ++ L+ + D FA P I + Q ++L Sbjct: 512 DVKCGKSRRKFANRDQVIDLQADFPRDEQFAPYYPFELEKQIVQTIRLERKQEAKELIDG 571 Query: 72 LGLHSKDRLLIN---QSPPMPLVTAIFDSFNESGVN-SPILSNMLYLSCLSMFSHKKELI 127 ++ I+ S + L + I + SG+N S + + +S E Sbjct: 572 CMKELSEKAAIDRHVHSALIQLFSRIQEDILHSGLNPSELFQHRNPFLDISELREPNEAA 631 Query: 128 PLLF----------------NSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKK 171 L ++ +V +I L A+ + + + K Sbjct: 632 AWLMDVVVTPYLSKLEGRKNRQQKQLAERVIAMIHEQYMADISLESCADALGMNSYTLSK 691 Query: 172 KLQD-ENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTP 230 + F + R+ A+ LL +H ++E+ GY +YF F++ G+ P Sbjct: 692 AFKQVTGINFIDYVTQIRIEKAKELLVNTNKKIHDVSEEVGYR-HNYFNRIFKKQVGMPP 750 Query: 231 HQFAQHSPGT 240 F Q T Sbjct: 751 GVFRQMYQET 760 >UniRef50_C6D174 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D174_PAESJ Length = 281 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 39/237 (16%), Positives = 76/237 (32%), Gaps = 10/237 (4%) Query: 7 VILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFC---SPDTRRLDIDELTVCHYLQ 63 I++ ++ + L L L + R + +L Sbjct: 51 HIVLGGKGYLHTDNMTYELTQGQGFLYGPGLRQTYHSDARDPWSIRWVHFYGARPEEFL- 109 Query: 64 NIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHK 123 + + L H D +P L+ + + V+ + L+ Sbjct: 110 DGKGLDEPWLFHLPD-----LAPVEALMERLLELGRSYEVDDEYAAASTLYELLTRIQTT 164 Query: 124 KELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSK 182 + + + + + + + + L A S +K FS Sbjct: 165 ASQLNVSVHQTADKIRAAANYVRANCNQPFTLEQAAAIAGYSSHYFSRKFNQTFGKSFSD 224 Query: 183 ILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPG 239 L +R+ A++LL ++ + IA + G+S TSYF FR G+TP QF + Sbjct: 225 FLTEARILRAKQLLASTRLSVKLIALETGFSQTSYFSKCFRDQEGMTPLQFRERHQA 281 >UniRef50_C6D143 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D143_PAESJ Length = 536 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 46/246 (18%), Positives = 87/246 (35%), Gaps = 21/246 (8%) Query: 9 LIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRL--------DIDELTVCH 60 L+ R + ++ + + I+ + DFA + D V Sbjct: 283 LLYREIRFSMTKARL-IADGQIVRYNEVEPSDFAAYRMHDEFIPGLLKRLDSGDAGQVAE 341 Query: 61 YLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMF 120 Y+ I+ G S + + NE + IL L C S Sbjct: 342 YMNRIKDALLATGNASFSYAQAFAMSFLGELIRHLKWKNEPDSEANILLWRQMLDCGSAL 401 Query: 121 SHKKELI-----------PLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLI 169 + L N + +V I + + W ++ +AE + S + Sbjct: 402 QLAELLAGYVQRYMDTEQKAQLNQQHNLIRRVSLFIEERLHEHWTVKQLAEHFNLNASYL 461 Query: 170 KKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGV 228 + E S+ + +R+ AR+LL+ I ++ +AE+ G +T+YF F++ GV Sbjct: 462 SVLFKREMGRTISEFVQDTRIERARKLLQDPNIKVYEVAEQVGIQTTAYFTYLFKKLVGV 521 Query: 229 TPHQFA 234 TP ++ Sbjct: 522 TPQEYR 527 >UniRef50_A9KRL7 Transcriptional regulator, AraC family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KRL7_CLOPH Length = 283 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 42/236 (17%), Positives = 84/236 (35%), Gaps = 9/236 (3%) Query: 6 SVILIRRSFDIYHEQQKISLHNESILLLEKNLAD--DFAFCSPDTRRLDIDELTVCHYLQ 63 + ++ F ++ E + L + + ++ C+ + D + L +L Sbjct: 43 IIRILDGEFRLFLEGTEYLLKKDDVAFIKDGKLHGGSPKDCTYECIVFDFNILRQRSFLT 102 Query: 64 NIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSH- 122 + L + + N++ + +FD+ + L + Sbjct: 103 DTF-LRKIAHQKISIYPVHNKTCITSPLITMFDAIRSEEEGYELSILGSLLLFFAALQKN 161 Query: 123 ----KKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD-EN 177 K+E L LI D AK L++++ S + Q+ N Sbjct: 162 EYYSKEEEYDLKSQKAIEQLKASLELIVTDYAKPLTLQELSRECGLSPKYFCRFFQEYTN 221 Query: 178 TCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 L R+ A + + L IA +CG++ SYFI TF++Y G+TP ++ Sbjct: 222 RTPIDYLNYYRIEQACYQISQSEDTLTDIAFRCGFNDFSYFIKTFKKYKGITPKKY 277 >UniRef50_UPI0001788EF7 two component transcriptional regulator, AraC family n=2 Tax=Bacillales RepID=UPI0001788EF7 Length = 516 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 58/156 (37%), Gaps = 6/156 (3%) Query: 80 LLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSG 139 + P + +F + + S+ ++ +E +S + Sbjct: 361 IAAKDVEKSPDYSEVFTPMHRINTLQGLRSH-VWRIVERSLQRLQEAEQGYSLHVSFLVE 419 Query: 140 KVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLEL 198 +V + L+ +++R+ + + + Q E FS L R+ A +LL Sbjct: 420 QV----QHHYPEELSLKTLSQRLQMHPNYLGQLFQQEVGASFSDYLNQYRIEKATQLLLH 475 Query: 199 RQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFA 234 IA GY+ +SYF F++Y GV+P + Sbjct: 476 TDQKTADIAFSVGYTDSSYFYRQFKKYTGVSPTEMR 511 >UniRef50_Q2BQ54 Transcriptional regulator, AraC family protein n=2 Tax=Oceanospirillaceae RepID=Q2BQ54_9GAMM Length = 304 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 40/239 (16%), Positives = 87/239 (36%), Gaps = 5/239 (2%) Query: 7 VILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFC---SPDTRRLDIDELTVCHYLQ 63 + + + + QK + + ILL+ K ++ + + + Q Sbjct: 62 IYCLDGEGEAVIDGQKTRIRSGDILLIPKGVSHTYQARKRKPWTIYWVHFHGHHAEDFAQ 121 Query: 64 NIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHK 123 +++Q N + + I+ + + +N+ I + LS + Sbjct: 122 HLQQRESNQRRYVMP-IGIHSRLASDFEALLEARESTYNLNAYICAANQLRQILSHIALL 180 Query: 124 KELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD-ENTCFSK 182 + L + +V L+ I ++ L +AE + S+ KK ++ T Sbjct: 181 QPLAKQKQSRGGLDIERVHSLMQTHIHEQLDLDTLAESISLSKYHFVKKYKEVTGTTPIN 240 Query: 183 ILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGTF 241 + ++ A LL+ ++ +A GY YF F++ GV+P Q+ + G F Sbjct: 241 HFIQLKIERACHLLDTTNNGINEVAFAVGYEDAYYFSRIFKKLMGVSPSQYRKMRTGAF 299 >UniRef50_Q47XU2 Transcriptional regulator, AraC family n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47XU2_COLP3 Length = 305 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 40/241 (16%), Positives = 82/241 (34%), Gaps = 10/241 (4%) Query: 3 HVCSVILIR-RSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHY 61 HV +I I + + SI+LL + + Y Sbjct: 62 HVHYLISTHAGEGKIKLGNNEYLVKPGSIVLLPAGTPFLYELSGEYWEMCWLLLHDCSEY 121 Query: 62 LQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFS 121 + P + +RL ++ I + + + + L + + Sbjct: 122 KFVHQLHPSVYSSINAERLY-------QTMSLIREFQHGESIYQSDIILRLVEVLVYQIA 174 Query: 122 HKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCF 180 + L + R ++ + W ++ +A M+ SE + + E Sbjct: 175 QTLNMGQQLTKQQQKFHSLIRR-VNKQLQLSWTVKQLAAEMHMSEPHFFRLCKKEMGMTP 233 Query: 181 SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGT 240 K+L +R+ A LL Q L IA+ GY ++ F + F++ YG++P ++ + Sbjct: 234 IKLLTHTRLEYACYLLRYTQYNLDQIADTVGYGDSASFAHRFKKDYGLSPGRWRKEQINN 293 Query: 241 F 241 F Sbjct: 294 F 294 >UniRef50_A8SAS3 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SAS3_9FIRM Length = 271 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 46/119 (38%), Gaps = 1/119 (0%) Query: 121 SHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDEN-TC 179 + + + V V + + + L ++E ++ S + + + + Sbjct: 145 QETEPAGEGESDRNALVMDHVRKYMEDNYMADLSLDSVSEILHISPAYLSAQFKKYQKMN 204 Query: 180 FSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSP 238 F L R++ A+ LL +A GY SYF F++ G+TP Q+ + + Sbjct: 205 FLDCLTELRINAAKELLADPFRSAAEVASMVGYEDASYFARAFKKRTGMTPTQYRKEAA 263 >UniRef50_A4XMG0 Two component transcriptional regulator, AraC family n=2 Tax=Thermoanaerobacterales RepID=A4XMG0_CALS8 Length = 529 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 78/207 (37%), Gaps = 4/207 (1%) Query: 34 EKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQ--LPRNLGLHSKDRLLINQSPPMPLV 91 E+++ + C D + ++ Y N ++ L L+ + Sbjct: 323 ERSIINSLLLCQKDVIKDKVESFINSLYSTNTFNKWFIKSAVLALLGSLIKVCHEKCIDL 382 Query: 92 TAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAK 151 + S + ++ S LS + + I + N + + I + K Sbjct: 383 NDVVSSKIFENILKTEKKELIKASLLSFLNATVDKIEQIENK-NLIVKAAISFIEKNYNK 441 Query: 152 RWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKC 210 L +A+ +Y + + + + E F L R+ A+ LL+ + + + +A Sbjct: 442 NITLESVAKEVYVTPAYLSILFKRELKINFVDYLHKIRIQKAQELLKNQNLKTYQVANMV 501 Query: 211 GYSSTSYFINTFRQYYGVTPHQFAQHS 237 G+S YF F++Y G+TP QF + + Sbjct: 502 GFSDEKYFSQVFKKYTGLTPSQFREAN 528 >UniRef50_C6CXU8 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CXU8_PAESJ Length = 529 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 68/196 (34%), Gaps = 5/196 (2%) Query: 52 DIDELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNM 111 ++ YL+ + Q R K L + ++ S + G + S Sbjct: 334 ELTLSVFDQYLEQLFQNARYDLRVIKYELEKLFDFIVQMLNESGFSMHHVGDLEHLHSEQ 393 Query: 112 L--YLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLI 169 L + + ++ K + I+ A L +A+ + + Sbjct: 394 LIREFAKYQIVLLINQVTNWYNLDSRGNMEKAKSYITDHYADDLSLEVVADYVQLNPHYF 453 Query: 170 KKKLQDE-NTCFSKILLASRMSMARRLLELR-QIPLHTIAEKCGYSSTSYFINTFRQYYG 227 K + F L R+S A+ LL + L I+ + GY +YF F++ G Sbjct: 454 SKLFHERCGITFVDYLTQVRISKAKELLAADFEQSLKEISMRVGYRDPNYFSRVFKKLTG 513 Query: 228 VTPHQFAQHSP-GTFS 242 ++P +F Q G FS Sbjct: 514 LSPSEFRQTHSVGYFS 529 >UniRef50_UPI000178A190 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178A190 Length = 540 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 43/249 (17%), Positives = 99/249 (39%), Gaps = 19/249 (7%) Query: 10 IRRSF-DIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLD--IDELTVCHYLQNIR 66 I +S D+ + + I+ LE++ + A+ P + + + E +L+ R Sbjct: 282 INKSIRDLLQMNEDMIKKRNQIMFLERHSLQEAAYTPPPLQDWEALLAENNPAAFLEETR 341 Query: 67 QLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPIL-----SNMLYLSCLSMFS 121 + +NL + + + +V ++ + + L ++ L+L L+ Sbjct: 342 RYLQNLAKSGVHSASVLRLFRLDMVQLVYSYLKGKEIQAHKLYTGKTNDQLFLQSLNSIE 401 Query: 122 HKKELIPLLFNS----------ISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKK 171 ++ + L + TV +++ I + +AE ++ + + + Sbjct: 402 DMEKYMAYLVRTAAEYHAYAGHSHTVVEEIKHYIGCHYGEELTRTTLAEIVFLNPDYLAR 461 Query: 172 KLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTP 230 + E ++ +R+ A+ LLE + ++ IA K GY++ SYF F+Q G P Sbjct: 462 VFKKETGVSLGTYIIQARIRAAKHLLESTPLSVYQIAAKVGYANYSYFSKLFKQDTGWAP 521 Query: 231 HQFAQHSPG 239 + + G Sbjct: 522 SDYRRVLQG 530 >UniRef50_C6CUY4 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CUY4_PAESJ Length = 541 Score = 134 bits (338), Expect = 2e-30, Method: Composition-based stats. Identities = 37/150 (24%), Positives = 72/150 (48%), Gaps = 4/150 (2%) Query: 90 LVTAIFDSFNESGVNSPI--LSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISF 147 L I D F+ SPI + ++ + ++ S++K + +S S++ KV+ I Sbjct: 390 LSDMIGDDFHAFANGSPIHTVDDLRTWTARTIDSYRKSVNSEDKDSRSSIIRKVQEFIHN 449 Query: 148 DIAKRWYLRDIAERMYTSESLIKKKLQ-DENTCFSKILLASRMSMARRLLELRQIPLHTI 206 + + L I+ +Y + S + K + + S+ LL +RM + LL ++ I Sbjct: 450 HLEQA-SLHSISTHVYLNPSYLSKIYKTETGEGISEYLLRARMEKSADLLAQTDEKIYEI 508 Query: 207 AEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 + GY SYFI F++++G+TP ++ Sbjct: 509 SVMLGYQKPSYFIQLFKKHFGITPQEYRNK 538 >UniRef50_C6CT66 Two component transcriptional regulator, AraC family n=2 Tax=Bacillales RepID=C6CT66_PAESJ Length = 262 Score = 134 bits (338), Expect = 2e-30, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 1/107 (0%) Query: 131 FNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD-ENTCFSKILLASRM 189 S + + + + + +RDIA+ ++ + S ++ FS L R+ Sbjct: 147 ETQYSAPVKEAIQYLEEHLHEPVTMRDIADHLHMNASYFSVLFKEQTGLTFSDYLTRRRV 206 Query: 190 SMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 A+ LL ++ ++ IAEK GY + YF+ FR + GV+P Q+ ++ Sbjct: 207 QRAKELLTNTRLSINEIAEKAGYQTAKYFVKVFRSHEGVSPGQYRKN 253 >UniRef50_Q2SDE2 AraC-type DNA-binding domain-containing protein n=13 Tax=Gammaproteobacteria RepID=Q2SDE2_HAHCH Length = 397 Score = 134 bits (338), Expect = 2e-30, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 72/163 (44%), Gaps = 3/163 (1%) Query: 74 LHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNS 133 HS + + P F++ + P++ + S + + Sbjct: 229 EHSSEYRHLFYCPLQFNQPDTRIYFHKRYLQLPVIQDEP--SLKEFLKTSPADLLARPDD 286 Query: 134 ISTVSGKVERLISFDIAKR-WYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMA 192 +T + K+ L+ D++++ IA ++ S ++++L++ENT F +I R A Sbjct: 287 SNTYTSKIRALVGRDLSQQMPDFEFIASQINVSPQTLRRRLKEENTSFQEIKDNMRRDAA 346 Query: 193 RRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 L R++ ++ IA K G++ S F F+++ GVTP + + Sbjct: 347 IYYLSRREMSINEIAFKVGFTEPSTFHRAFKKWTGVTPGDYRE 389 >UniRef50_B0K339 Response regulator receiver protein n=9 Tax=Thermoanaerobacterales RepID=B0K339_THEPX Length = 365 Score = 134 bits (338), Expect = 2e-30, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 2/116 (1%) Query: 123 KKELIPLLFNSISTVSGKVERLISFDIAK-RWYLRDIAERMYTSESLIKKKLQDE-NTCF 180 + + + + + +LI + + L IAE++Y + + + + E F Sbjct: 248 CEYVSLTKNSKNRKLIDEAIKLIQENYSDLNISLNSIAEKLYITPNYLSTLFKSEMGVTF 307 Query: 181 SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 S L A R+ A+ LL+ ++ ++ +AE GY+ YF F+ G TP ++ + Sbjct: 308 SDYLTACRIEKAKELLKDVKVKIYEVAEAVGYTDQHYFSKVFKNITGFTPKEYREK 363 >UniRef50_UPI0001C362BB response regulator receiver protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C362BB Length = 482 Score = 134 bits (338), Expect = 2e-30, Method: Composition-based stats. Identities = 38/209 (18%), Positives = 75/209 (35%), Gaps = 18/209 (8%) Query: 47 DTRRLDIDELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNES--GVN 104 + Y IR++ L +++ I + + A+ S S Sbjct: 275 HELEAALKNTRENQYQVLIRKIVGELEADNEN--FIYYTEFFHVFNAVIASIYTSYGLNL 332 Query: 105 SPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVE-------------RLISFDIAK 151 +S L+ F+ ++L+ + S + KV R I + Sbjct: 333 PDDISRSFSPMALADFNRSEDLLKSVNASAEALVTKVRELTGRSEIVDNVIRYIKNHYKE 392 Query: 152 RWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKC 210 L +A + S + + +K L R+++A LL+ + + IA++ Sbjct: 393 DINLNVLANEFFLSPAYLSRKFSQTTGVSIMSYLEDYRINVATDLLKGSERSISEIADQV 452 Query: 211 GYSSTSYFINTFRQYYGVTPHQFAQHSPG 239 GY +YF F++ G+TP +F + S Sbjct: 453 GYYDANYFTKIFKKVKGITPKEFRKMSKS 481 >UniRef50_C6D7X2 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D7X2_PAESJ Length = 267 Score = 134 bits (338), Expect = 2e-30, Method: Composition-based stats. Identities = 33/192 (17%), Positives = 74/192 (38%), Gaps = 8/192 (4%) Query: 51 LDIDELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIF---DSFNESGVNSPI 107 L + + V Y + ++ LV A+ +E Sbjct: 77 LGLRVIFVSGY--QDFHYVKQALSLRAYSYVLKPMDDSELVDALVHVTKELDEVTRKQEE 134 Query: 108 LSNMLYLSCLSM--FSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTS 165 + + + E + + + + +V + + + L+++AER S Sbjct: 135 ERQWREAARRTAPRYQQLPENVSVEPGKHTKLIQEVTAYMKEHLNRSLTLKEVAERFAFS 194 Query: 166 ESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQ 224 + + ++E FS+ ++ RM A LL+ ++ ++ +A++ GY YF F++ Sbjct: 195 PNYLGLMFKEEMGVGFSEYVITMRMERAGELLKDPKVKIYEVADQVGYRYMPYFSRQFKE 254 Query: 225 YYGVTPHQFAQH 236 +G+TP F +H Sbjct: 255 TFGMTPIDFRRH 266 >UniRef50_Q5WCV1 AraC/XylS family transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WCV1_BACSK Length = 293 Score = 134 bits (338), Expect = 2e-30, Method: Composition-based stats. Identities = 48/241 (19%), Positives = 92/241 (38%), Gaps = 13/241 (5%) Query: 7 VILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFC---SPDTRRLDIDELTVCHYL- 62 +I+ + + QQ + + + A + L D L L Sbjct: 43 LIVFDGAGSVVVNQQMSPIKKGMLFFFQPFQLHHVAPASAAPYERATLHFDPLHAEKRLT 102 Query: 63 --QNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPI-----LSNMLYLS 115 + Q R L I+ S + ++ D ++ + I +L + Sbjct: 103 AYPAMAQFFRQLKNGYNQDPFIDFSEDYFYIRSLCDMHDKMAEAASINERAEREELLLIQ 162 Query: 116 CLSMFSHK-KELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQ 174 LS H+ K P + ++ I + + + L +A+ +Y S+S + K + Sbjct: 163 LLSYMQHQLKGRPPTKKLRHIHYAERIMGWIEDHLTEPFNLSLLAQDLYLSKSYVSKVFR 222 Query: 175 DE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 E + + L A RM A LL+ +P+ I+++ G ++ SYFI F++ TPHQ+ Sbjct: 223 RETGSSITDYLTARRMKEACHLLQTTSLPIDEISQRIGLTNVSYFIQMFKRKTNATPHQY 282 Query: 234 A 234 Sbjct: 283 R 283 >UniRef50_A6BIB0 Putative uncharacterized protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BIB0_9FIRM Length = 285 Score = 134 bits (338), Expect = 2e-30, Method: Composition-based stats. Identities = 34/240 (14%), Positives = 84/240 (35%), Gaps = 9/240 (3%) Query: 10 IRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCS--PDTRRLDIDELTVCHYLQNIR- 66 + S I+ E + ++L +++ + S + +D+ + Y ++ Sbjct: 43 LNGSVRIHIEHEHLTLQRNQLIVFDSKEVHSIHSDSKLYMFLCIHVDKKQLSVYCPDLEL 102 Query: 67 ---QLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHK 123 + SK I+ +T + + +L L+ L + Sbjct: 103 YHIKCRPVSLDDSKSTPYIHLCQLAHDLTRTNVENKNTSAMRSDGTALLMLADLIRYFSV 162 Query: 124 KELI--PLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCF 180 L + + K+ ++ ++ L ++A ++ S + + F Sbjct: 163 YSLPGTTTGTGQSNDILRKIISYVNEHYTEKLSLEEVANQVGFSREYFCRFFKQHMGITF 222 Query: 181 SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGT 240 + L R+S A R+L + + ++ G+++ + F F++ YG+TP Q Sbjct: 223 LRYLNEVRISHAGRILMNTDKSISEVMQESGFTNQTIFNRLFKEIYGMTPRQARNSYAEN 282 >UniRef50_P32326 Urease operon transcriptional activator n=12 Tax=Gammaproteobacteria RepID=URER_ECOLX Length = 296 Score = 134 bits (338), Expect = 2e-30, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 105/237 (44%), Gaps = 14/237 (5%) Query: 15 DIYHEQQKISLHNESILLLEK------NLADDFAFCSPDTRRLDIDELTVCHYLQNIRQL 68 +I Q I + ++ L++ K N+ + + L + + ++ L Sbjct: 33 NIVINGQSIEIESDVTLIIPKYSQVSCNIVCNTVKQPLELHTLSMSAEELQAVFLLLKTL 92 Query: 69 PRNLGLHSKDRLLINQSPP------MPLVTAIFDSFNESGVNSPIL-SNMLYLSCLSMFS 121 ++ + + + + SPP L+ +S +L LY ++++ Sbjct: 93 MKSGAPLTSHQPIYHISPPETVRDNFSLLKQCLPLKKQSASQEALLMKQSLYFILMAIYQ 152 Query: 122 HKKELIPL-LFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCF 180 +++ L FN + + LI+ + K+W+L D+A+ ++T+ S +++ L E F Sbjct: 153 EGIDILNLFRFNYDEPKNQAITHLITQEPQKKWHLDDVAKALFTTPSTLRRHLNREGVSF 212 Query: 181 SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 ++LL RM MA L + I+ +CG+ S +YF + F++ Y +TP QF S Sbjct: 213 RQLLLDVRMGMALNYLTFSNYSVFQISHRCGFGSNAYFCDVFKRKYNMTPSQFRLQS 269 >UniRef50_C9BAM1 Helix-turn-helix domain-containing protein n=12 Tax=Enterococcus faecium RepID=C9BAM1_ENTFC Length = 483 Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 78/193 (40%), Gaps = 4/193 (2%) Query: 49 RRLDIDELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPIL 108 ++L++ + + + + + L+ + + D G+ Sbjct: 294 KQLEVAQKMITDFFEQFQLAAMMPEDIRYSSFLL-FMEIQRELIDLEDEEYLQGIEKIHQ 352 Query: 109 SNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESL 168 + + + S K+ S + KV ++ + L++++E ++ + Sbjct: 353 AKTVQELQQLLLSFIKKHQRQKKYSDN--VEKVIVILHQHYQEPLTLKEVSENLHLNVMY 410 Query: 169 IKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYG 227 + + + E FS L RM A++LL ++ IA + GY++T+YF F++ G Sbjct: 411 LGQLFKKETKKSFSAYLNHLRMEKAKQLLLHSNQNINEIASEIGYNNTTYFSKLFKKIVG 470 Query: 228 VTPHQFAQHSPGT 240 +P ++ ++S + Sbjct: 471 RSPKEYRENSGES 483 >UniRef50_A0AET6 Complete genome n=16 Tax=Listeria RepID=A0AET6_LISW6 Length = 277 Score = 134 bits (337), Expect = 3e-30, Method: Composition-based stats. Identities = 36/244 (14%), Positives = 80/244 (32%), Gaps = 19/244 (7%) Query: 8 ILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSP---DTRRLDIDELTVCHYLQN 64 I+ E +++ L +L+ + + T+ Y +N Sbjct: 39 IIYDGKVIYDIEGERVELEKGDMLIFNPGVKHYDITEPGMTNAQLHIGFRNFTLEGYSRN 98 Query: 65 IRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKK 124 + ++ S + + I + + ++ + + + Sbjct: 99 TFPFKKAFLRKKEE-----DSAILSISKQIIEEKDAEKPGYDLILKAFVMQLIIHVLREA 153 Query: 125 ELIPLLFN---------SISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD 175 L N + ++ + + L +++ MY S + I K ++ Sbjct: 154 TPEQLENNGVKLSTDEQQKQLLVNEIIHYMEKHHTEDVSLSTLSQTMYISPAYISKVFKE 213 Query: 176 E-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQ-F 233 E L+ R+S A LL+ + I + A GY+ YF F++YYG P + + Sbjct: 214 ETGESPINYLIKIRLSRAEELLKNKNITVKQAANMVGYNDAYYFSKLFKKYYGFPPSENW 273 Query: 234 AQHS 237 + S Sbjct: 274 RKSS 277 >UniRef50_UPI0001C3613B two component transcriptional regulator, AraC family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C3613B Length = 518 Score = 134 bits (337), Expect = 3e-30, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 67/176 (38%), Gaps = 3/176 (1%) Query: 62 LQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFS 121 L + ++ L + L + L + + + G + S L+L+ Sbjct: 344 LSSAKKEILCLICNLAWLLNESHDDIGALFAEKVNYYEKIGRLEEMGSLELWLNN-YFRW 402 Query: 122 HKKELIPLLFNSISTVSGKVERLISFDIAKR-WYLRDIAERMYTSESLIKKKL-QDENTC 179 + + + +R I + + L +A + +E + ++E Sbjct: 403 VMDYAAHQNDRRQADMMSRAKRFIMDNYSNPELTLGSVAGYVGVNEKYFSSRFTKEEGMT 462 Query: 180 FSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 FS L R+ AR L+E + ++ I++ GY+S +F F++ V+P + + Sbjct: 463 FSNYLTEVRIRKARELMEQTDLKIYEISQSVGYNSVEHFTRVFKKICQVSPGAYRK 518 >UniRef50_C5EG90 Putative uncharacterized protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EG90_9FIRM Length = 298 Score = 134 bits (337), Expect = 3e-30, Method: Composition-based stats. Identities = 34/236 (14%), Positives = 77/236 (32%), Gaps = 11/236 (4%) Query: 7 VILIRRSFDIYHEQQKIS-LHNESILLLEKNLADDFAF---CSPDTRRLDIDELTVCHYL 62 ++ I + + + L S +L N + + S + + V YL Sbjct: 51 LLYIASGIAHFQKGETYVPLPAGSAVLYHPNHTQFYYYSAEDSSEVYWIHFTGNRVSQYL 110 Query: 63 QNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSH 122 + + + I+ I N L + L + + Sbjct: 111 SDWGVPDNDFYNVGINSRYIS------FFNHIIHEQQLKKENYMELCKYYLIQILILMNR 164 Query: 123 KKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFS 181 + +N+ ++ K + + + D+A+ + + + Q+ Sbjct: 165 GMKEASAPYNNHVSIINKTVTYLHEHYNEPISIIDLAKENHLTPNWFNHCFQEYYGMSPQ 224 Query: 182 KILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHS 237 LL R+ A+ L + + +A GYS YF F++ G++P Q+ ++ Sbjct: 225 AYLLNIRIDKAKEFLTNYMLSISDVALLTGYSDAFYFSRIFKRKTGLSPQQYRKNC 280 >UniRef50_B4AP12 Periplasmic binding protein n=1 Tax=Bacillus pumilus ATCC 7061 RepID=B4AP12_BACPU Length = 527 Score = 134 bits (337), Expect = 3e-30, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 83/232 (35%), Gaps = 9/232 (3%) Query: 6 SVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNI 65 SV+ + I E + L L + ++ S +++ + ++ Y+ Sbjct: 33 SVLTADGTVVIQLEGMEYELDGGDSLFIRSHIP--VVIRSLSNQQVTVFAVSFEQYMLTN 90 Query: 66 RQLPRNLGLHSKDRLLINQSPPM--PLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHK 123 + + D L N M P++ ++ + +L L Sbjct: 91 DADDELIYKINYDTLPDNGQVVMGSPVLFHHIKRLSDPSYSESSQVKLLKLVLQIFQQQN 150 Query: 124 KELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSK 182 ++ I S + + I+ + +D+A +M +ES + + Sbjct: 151 EKTIHADHYS----IQMILQYIAEHYQQELTRKDLAHKMGFNESYFSTFFKKSVGMSVTD 206 Query: 183 ILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFA 234 + R+ A++LL + IA++ GY+ + YF FRQ G +P Q+ Sbjct: 207 YIAQIRIDEAKKLLFKTDEQVQAIAQRVGYTDSLYFSRKFRQKTGRSPSQYR 258 >UniRef50_B2HZ04 AraC-type DNA-binding domain-containing protein n=17 Tax=Acinetobacter RepID=B2HZ04_ACIBC Length = 341 Score = 134 bits (337), Expect = 3e-30, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 67/143 (46%), Gaps = 2/143 (1%) Query: 93 AIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKR 152 + SF++ + +++ S +++ + EL L ++ +V ++S Sbjct: 197 HLISSFDKKYLGFKLVNADPIASQIAINQCEAELSAL--GERRRLAMRVRDILSNSEQHY 254 Query: 153 WYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGY 212 + ++AE ++ S+ +K++L E T FS ++ R A LL L IA++ GY Sbjct: 255 LSIENVAEYLHMSDRTLKRQLAAEGTSFSTLVDEVRYRHATSLLSRTDYSLEQIADELGY 314 Query: 213 SSTSYFINTFRQYYGVTPHQFAQ 235 S + F F+++ G +P + + Sbjct: 315 SDVANFSRAFKRWSGRSPSNWRK 337 >UniRef50_C6D8S9 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D8S9_PAESJ Length = 534 Score = 134 bits (337), Expect = 3e-30, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 69/187 (36%), Gaps = 2/187 (1%) Query: 54 DELTVCHYLQNIRQLPRNLGLHSKDRLL-INQSPPMPLVTAIFDSFNESGVNSPILSNML 112 D Y Q + + + Q +P+ T + SG N+ + Sbjct: 345 DLFDRLKYGQVDHAYMVSYYFGLVHTVFQVLQRRSVPVETVYAEEEWHSGENAMKSLGAM 404 Query: 113 YLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKK 172 + + + + +S KV+ I ++ +IA +Y + + + + Sbjct: 405 KAWTIQFAAKASDCLVKQGKDVSNTIAKVQGYIEENLQHDLNREEIARHVYLNPAYLSRL 464 Query: 173 L-QDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPH 231 ++ + ++ RM + R L+L + IA GY+S S+F F++ G+TP Sbjct: 465 FRKETGKSLTDYMVDRRMFRSIRELKLTNHKISDIAISVGYASFSHFSKQFKKSTGMTPQ 524 Query: 232 QFAQHSP 238 + + Sbjct: 525 DYRKKYQ 531 >UniRef50_C0VNX7 AraC family transcriptional regulator n=1 Tax=Acinetobacter sp. ATCC 27244 RepID=C0VNX7_9GAMM Length = 401 Score = 134 bits (337), Expect = 3e-30, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 92/223 (41%), Gaps = 7/223 (3%) Query: 20 QQKISLHNESILLLEKNLADDFAFCSPDTRRLDID-ELTVCHYLQNIRQLPRNLGLHSKD 78 + K+ +++ L F F L V + Q + D Sbjct: 169 KPKLQVNDGKAYLYFNQPLQQFRFNRHAIIFLVFGFAQIVENLAQQRLDIRFEFQQDKPD 228 Query: 79 RL--LINQSPPMPLVTAIFDSF--NESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSI 134 + N + A D N++ ++ P+ + ++ L++ K+++ L Sbjct: 229 FYKKIFNINQLNGEFNAKNDCLILNQNVLSLPLKTADALVARLTIQQCKQDIQKLFLKRK 288 Query: 135 S--TVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMA 192 + + + V+ + + L+ +AER++ SE ++++L E T F ++ R A Sbjct: 289 NVDSAAKNVKEELYDEALGFLSLKQVAERLHLSERTLQRQLAKEQTSFQLLIAEVRRKQA 348 Query: 193 RRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 LL+ + + + IAE+ GY+ S+F F+++ VTP + + Sbjct: 349 EFLLKQQHLSIEQIAERLGYADISHFSRAFKKWTNVTPKFYRE 391 >UniRef50_UPI0001788C94 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788C94 Length = 315 Score = 134 bits (337), Expect = 3e-30, Method: Composition-based stats. Identities = 43/258 (16%), Positives = 88/258 (34%), Gaps = 28/258 (10%) Query: 11 RRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRL---DIDELTVCHYLQNIRQ 67 + F QK + +I +L + + + L+ + Sbjct: 60 KGEFIHTLYGQKYRMVQGNIFVLPPYSVHRVEMVPGKELEVLGCEFMPAFINERLEGMPD 119 Query: 68 LPRNLGLHSKDRLLINQSPPMPL---------------VTAIFDSFNESGVNSPILSNML 112 P+ L S + + +PL +T + + F G IL Sbjct: 120 EPQ-LFDLSFIKPFVTTEDRVPLKITLTGGSDLVVKELLTEMLNEFGGRGPFFDILLKAN 178 Query: 113 YLSCLSMFSHKKELIPLLFN-------SISTVSGKVERLISFDIAKRWYLRDIAERMYTS 165 L L++ + + + + V + I + +L D+ R S Sbjct: 179 LLKLLAIVNREHAEQSKHISVTAGSAPYREPILESV-QYIHDHFDQPLWLEDLCARTMMS 237 Query: 166 ESLIKKKLQD-ENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQ 224 + ++ ++ FS+ L R+ MA RLL ++ + + K G++ YF F++ Sbjct: 238 RTSFCRRFKEVTGWTFSQYLANYRIRMAMRLLTEPELTVTDVCFKVGFNELPYFCRIFKK 297 Query: 225 YYGVTPHQFAQHSPGTFS 242 Y G TP + +++ T Sbjct: 298 YTGTTPAYYKKNAFKTVD 315 >UniRef50_Q03FA9 Transcriptional regulator, AraC family n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03FA9_PEDPA Length = 298 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 38/216 (17%), Positives = 74/216 (34%), Gaps = 4/216 (1%) Query: 25 LHNESILLLEKNLADD---FAFCSPDTRRLDIDELTVCHYLQNIRQLPRNLGLHSKDRLL 81 + + SI+LL F D + +V Y+ + +K Sbjct: 78 IESGSIVLLPPGKEHTYYAFDDDPWDIFWAHFNGDSVNEYIPQEALQGNGFLVINKTSTE 137 Query: 82 INQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKV 141 Q I S S+ + + L+ S + L + + K Sbjct: 138 DMQMLMSQFWQMIQALSAGFSYQSVFYSSQVLGATLAYVSLQSVLPHDSYTMGNEYITKA 197 Query: 142 ERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQ 200 + I ++ L + E + S+S + + + T ++ +L +M A L+ Sbjct: 198 VKYIYDHFEEKVSLSTLTEVLDVSKSYLSRIFRQTVGTSVNQFILDIKMKQACYYLKDTN 257 Query: 201 IPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 + +H IA + GY YF F++ G +P F + Sbjct: 258 LAVHQIASRLGYDDPYYFSRIFKKVVGSSPRVFRKQ 293 >UniRef50_A1HMP5 Two component transcriptional regulator, AraC family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HMP5_9FIRM Length = 251 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 87/236 (36%), Gaps = 17/236 (7%) Query: 16 IYHEQQKISLHNESILL--LEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRNLG 73 + + L + +L+ + + A L +L +L Sbjct: 4 LLVNDDPLELEQQKLLIQSVCPHWRLFTAGNGSAAINLTTTNYFELAFLNINLPAQSDLI 63 Query: 74 L--------HSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKE 125 + KD +++ + A + PI ++ L K Sbjct: 64 VAGKLRQSGRVKDIVIVTAHQDFAIAHAAIKIGAADLLIKPISADELNTILSRYLPPKNT 123 Query: 126 LIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKIL 184 S + KV ++ A+R L +IA ++ + S + ++ + E FS+ L Sbjct: 124 -----KPVYSPLITKVLTILENRYAERLSLTNIAATVHVNPSYLSRRFKAEVGYSFSQYL 178 Query: 185 LASRMSMARRLLEL-RQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPG 239 + R+ +A+ LL + + IAE+ G++S Y F + G+TP ++ +++P Sbjct: 179 INLRLKIAKDLLISRPDLSIAQIAEQTGFASQQYLSALFHRNTGLTPREYRKNNPA 234 >UniRef50_C7G788 Transcriptional regulator, AraC family n=2 Tax=Bacteria RepID=C7G788_9FIRM Length = 292 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 34/217 (15%), Positives = 75/217 (34%), Gaps = 13/217 (5%) Query: 24 SLHNESILLLEKN---LADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRNLGLHSKDRL 80 + H L+ + + + + Y R H+ Sbjct: 84 TAHAGDCFFLDCSGEYTHISTDEDPWELLWIHFNGPEARAYYTYFRDH------HNWHFR 137 Query: 81 LINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGK 140 + + + + +I E ++ +L+ + L++ + L S Sbjct: 138 SAHFTELINAIESIIRYNEEPTDDTDLLTAQQIIHILTLICTESNEKNELL---SDKLKT 194 Query: 141 VERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELR 199 + + + L +AE+ + S+ + ++ + E T + +LA R++ A+ LL Sbjct: 195 ILHYLDEHYTENISLDQLAEQFFISKYYLSREFKKEFGTTVIQYVLAKRINNAKELLRYS 254 Query: 200 QIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 + IA CG SYF FR+ G T ++ + Sbjct: 255 NSSIEEIAHLCGIDDASYFNKVFRKMEGCTASEYRKR 291 >UniRef50_C7GHF4 Transcriptional regulator, AraC family n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GHF4_9FIRM Length = 291 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 36/241 (14%), Positives = 73/241 (30%), Gaps = 20/241 (8%) Query: 15 DIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDE--------LTVCHYLQNIR 66 + + I++L P + +YL Sbjct: 49 KYKIADRLYDVSEGDIIILNPGQKHQALCTDPSNPATEFFVGLCDVRFGDFPENYLPLHL 108 Query: 67 QLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSP----ILSNMLYLSCLSMFSH 122 + + L + L E+ V +L + L + + Sbjct: 109 KDLTSDPATQSPILHTSGELRQKLFKICTAMSVENDVCRSGRYIMLKSYLMQMLILLLRE 168 Query: 123 KKELI------PLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQ-D 175 + E + S V ++ +++ L IAE MY S I + + + Sbjct: 169 QSEPVKINTGCSFESTSKKYVVDQIVNYFEDHYSEKISLDQIAENMYLSPFYISRIFKSE 228 Query: 176 ENTCFSKILLASRMSMARRLLELR-QIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFA 234 + L+ R+ A+ LLE + +A K GY +F F++ +G+ P + Sbjct: 229 TGDTPIRHLINIRLEKAKELLENGFDGSIQEVAAKVGYDDVYHFSKLFKKRFGMPPSKIR 288 Query: 235 Q 235 + Sbjct: 289 R 289 >UniRef50_UPI00017894C2 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017894C2 Length = 310 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 31/241 (12%), Positives = 76/241 (31%), Gaps = 23/241 (9%) Query: 20 QQKISLHNESILLLEKNLADDFAFCSPDTRRL---DIDELTVCHYLQN-----------I 65 QQ + I ++ + + + + V Q Sbjct: 68 QQVYEIRKGDIFVIPPFTLHSVSISPDEDIEIYGCEFMPSFVNERFQEQPTDHAFFDVAF 127 Query: 66 RQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKE 125 + ++++ ++ ++ + + + D E +P L L + S Sbjct: 128 LEYFLRKEMNAQSQITLDSVTDVTVRNVLKDMLIEYERRTPFFQISLKAKLLVLLSILAR 187 Query: 126 LIP--------LLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD-E 176 + + +V I + L D+ S S ++ Sbjct: 188 QVNGELLREGFEKSEKYREIMTRVVDHIHNHYQEDMNLNDLCSLSNLSRSTFCILFKEWT 247 Query: 177 NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 F++ L R+ A +L+ ++ + + G++ SYF F++Y G++P F + Sbjct: 248 GKTFNRYLTDLRILQAMMMLKQPELSVTDVCYSTGFNELSYFCRIFKKYTGISPTDFRKQ 307 Query: 237 S 237 + Sbjct: 308 A 308 >UniRef50_Q5WK82 AraC/XylS family transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WK82_BACSK Length = 297 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 37/238 (15%), Positives = 86/238 (36%), Gaps = 13/238 (5%) Query: 6 SVIL---IRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYL 62 S+I I S + +++ ++ ++ + + + + + Sbjct: 53 SIIFQYTIAGSGVLEIGKERYTVGQHQAFIVSVPSDHRYYYPENAKEPWEF--IYISLQG 110 Query: 63 QNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSF---NESGVNSPILSNMLYLSCLSM 119 +++ + + L K +++ P PL+ +++ + G+ P L+ L Sbjct: 111 ASVQDIWQRLIQ--KSGPIVSLPPNSPLIRSLYSIYADTKADGLRDPYLAATQGYQFL-- 166 Query: 120 FSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDE-NT 178 + + + + I ++ L +IAE + S + + + + +T Sbjct: 167 IECFRAMAEERPQNEPYHYQRALAYIEAHYHEQICLDNIAEEVGVSRYTLTRLFKKQLHT 226 Query: 179 CFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQH 236 + RM A LL + IA GY +YF FR+Y G + QF ++ Sbjct: 227 TPISYVTDLRMRKACSLLLHTNRTIKQIAADVGYPDDNYFHKVFRRYTGSSATQFRRN 284 >UniRef50_A5ZHU6 Putative uncharacterized protein n=1 Tax=Bacteroides caccae ATCC 43185 RepID=A5ZHU6_9BACE Length = 284 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 28/245 (11%), Positives = 75/245 (30%), Gaps = 12/245 (4%) Query: 6 SVILIRRSFDIYHEQQKIS-LHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQN 64 + + + + + L+ ++ + + + + + Sbjct: 40 ELYYVVHGYGKRMAGDTLQPFAAGDVALIPPSMLHHWEYSPDSADDDGYVRYLMVAFSHS 99 Query: 65 IRQLPRNLGLHSKDRLLINQSPPMPL---------VTAIFDSFNESGVNSPILSNMLYL- 114 + + + ++RL P L + I N+ + L Sbjct: 100 LVERCMAVFPELRNRLTGITFPTNALKFGTGSSQTIRRILSQMNDMDELGRLCEMFRLLP 159 Query: 115 SCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQ 174 + + H P+ ++ + L DIA + + S + Sbjct: 160 AIFTSSDHTFAGKPMNIERDVRRMQQICVYVMTHYIHTISLDDIAAEVGMNRSAFCSYFK 219 Query: 175 D-ENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQF 233 + FS+ + R++ A LL+ Q + I G++ +F+ F+ G++P ++ Sbjct: 220 RCKGMTFSQYVTQYRLNTACELLKHSQKQVSEICFTVGFNDLPHFVRVFKNTLGMSPSKY 279 Query: 234 AQHSP 238 + Sbjct: 280 RRRFQ 284 >UniRef50_C6D0B3 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D0B3_PAESJ Length = 300 Score = 133 bits (335), Expect = 5e-30, Method: Composition-based stats. Identities = 32/251 (12%), Positives = 74/251 (29%), Gaps = 19/251 (7%) Query: 7 VILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIR 66 + ++ + SL +L + + + S L I + I Sbjct: 48 LYVLDGRITAHLGGTDYSLSTGEMLFISAGVPHNLNIDSGQALFLGIHFDFFDEFDIVID 107 Query: 67 Q------------------LPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPIL 108 Q L S + + + + + + F + + Sbjct: 108 QDIIVKDDTVVVEDFCSEALLSGCRPFSDNPVWTPSAELVKEMETVIKEFTLTKPGFEAV 167 Query: 109 SNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESL 168 L +S L + + V I + +A+ + E Sbjct: 168 CKGLMISILINLQRSRTEAGPHLTTRRERMTPVVEWIEQHYMEDCSNETLAKLLNIHEDY 227 Query: 169 IKKKLQD-ENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYG 227 + K+ + +K + + R A+RLL + ++ + GY YF F ++ G Sbjct: 228 LGKQFKSVYGMSLNKYVQSIRHREAKRLLRESDATVEQVSREVGYEDMHYFSRIFNKWEG 287 Query: 228 VTPHQFAQHSP 238 ++P ++ + Sbjct: 288 LSPREYRKTVQ 298 >UniRef50_B0NUZ5 Putative uncharacterized protein n=1 Tax=Bacteroides stercoris ATCC 43183 RepID=B0NUZ5_BACSE Length = 305 Score = 133 bits (335), Expect = 5e-30, Method: Composition-based stats. Identities = 42/249 (16%), Positives = 83/249 (33%), Gaps = 18/249 (7%) Query: 6 SVILIRRSFDIYHEQQKIS-LHNESILLLEKNLADD------FAFCSPDTRRLDIDELTV 58 +I +++S I ++L +L + +P R Sbjct: 54 EIIYVKKSCGRCFVGDCIECFSEGDVVLFGPSLPHYMRSDDAYHGDNPRLRVQGTIIQFE 113 Query: 59 CHYLQNIRQLPRNL-----GLHSKDRLLINQSPPMPLVTAIFDSFNE-----SGVNSPIL 108 +++Q L R ++ + V + +F E L Sbjct: 114 ENFMQYSFDHYPQFHQIRVLLKEARRGVVFHTADAGAVRDMVSAFPELKGFGQITGLLDL 173 Query: 109 SNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESL 168 L +S + + K+ I+ + + L +IAE + S Sbjct: 174 LQALAVSVPRRMLASPCYYEKFPTAGNKRIDKIISFINSNYTRSLKLDEIAEMANMNSSA 233 Query: 169 IKKKLQD-ENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYG 227 + +D F + + R+ A +LL + + + IA +CG+ S +F TF+Q G Sbjct: 234 FCRFFKDATGKTFLQYVADMRIGYACKLLTIGDMEISQIAVECGFDSIPHFNRTFKQLTG 293 Query: 228 VTPHQFAQH 236 +TP Q+ Sbjct: 294 LTPTQYRNQ 302 >UniRef50_UPI0001788EC5 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788EC5 Length = 524 Score = 133 bits (335), Expect = 5e-30, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 58/137 (42%), Gaps = 1/137 (0%) Query: 103 VNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERM 162 + + ++ + + L + ++ I + + LRD+A R Sbjct: 388 LQFETMDDIFSWLRMKAMEISEMLKNRKSTKNGRLVEEIIENIQARMHENITLRDMANRF 447 Query: 163 YTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINT 221 S + + ++E FS ++ RM AR LL+ ++ ++ IA + GY YF Sbjct: 448 SFSPNYLGVLFKEETGHNFSDYVIKLRMERARDLLKTTKLKIYEIASQTGYQYLPYFSRQ 507 Query: 222 FRQYYGVTPHQFAQHSP 238 F++ YG+TP ++ + Sbjct: 508 FKEMYGMTPLEYRRKHS 524 >UniRef50_C6CXP8 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CXP8_PAESJ Length = 768 Score = 133 bits (335), Expect = 5e-30, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 65/149 (43%), Gaps = 4/149 (2%) Query: 93 AIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKR 152 ++F+ + I +L C ++ + + +S K+ LI Sbjct: 623 SLFEELLKLNTVKEIED---WLWCKVVYPMIQIFMDRQDAQYHNISEKMIDLIHHHYDTD 679 Query: 153 WYLRDIAERMYTSESLIKKKL-QDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCG 211 L D A ++ + + + ++ NT FS+ L A R SMA++ L P+ IA + Sbjct: 680 LSLEDCAAKLNYNANYLSSVFRKETNTSFSEYLAAYRFSMAKKWLRETDTPVKDIASRLC 739 Query: 212 YSSTSYFINTFRQYYGVTPHQFAQHSPGT 240 Y++ FI +FR+ G+TP Q+ + T Sbjct: 740 YNNPQNFIRSFRKLEGITPGQYREKHVAT 768 >UniRef50_C4G5N9 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G5N9_ABIDE Length = 513 Score = 133 bits (335), Expect = 6e-30, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 87/216 (40%), Gaps = 13/216 (6%) Query: 35 KNLADDFAFCSPDTRRLDIDELTVCHYLQNIR----QLPRNLGLHSKDRLLINQSPPMPL 90 K + DF S + L +++ + Y+++ + + L D + + Sbjct: 298 KQIYQDFYSASGKEQYLQLEK--ILDYIESNNVLQIKYIKMLCKECLDVIYLRYVNDNTA 355 Query: 91 VTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVER---LISF 147 T D+ N++ + + +S + IP + +S ++ + I Sbjct: 356 FTK--DALNQAKSGIDETVHFSKMKRIS-LEYAGANIPDNEINEKELSQRIFKAVVFIQQ 412 Query: 148 DIAKRWYLRDIAERMYTSESLIKKKLQDE-NTCFSKILLASRMSMARRLLELRQIPLHTI 206 + L IA+ + + + ++E +S L R+ A LL + I Sbjct: 413 HYNEPISLEQIAQEANLNPEYLSRVFKEETGYNYSAFLSNIRLKKAEYLLINTVEKVQNI 472 Query: 207 AEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGTFS 242 AE GYS+ SYF F++ YGV P++F +++ G ++ Sbjct: 473 AEMVGYSNVSYFSTIFKKKYGVNPYEFRRNNAGKYA 508 >UniRef50_Q4ZTP2 Helix-turn-helix, AraC type n=23 Tax=Bacteria RepID=Q4ZTP2_PSEU2 Length = 307 Score = 133 bits (334), Expect = 6e-30, Method: Composition-based stats. Identities = 31/244 (12%), Positives = 82/244 (33%), Gaps = 15/244 (6%) Query: 7 VILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRL---DIDELTVCHYLQ 63 +++ S ++ + + S+ L NL ++ D + D+ L+ Sbjct: 52 HLIVASSGKVFVGDYIGNFNPASLFLTGPNLPHNWISQIDDGEVVPKRDMLVNFTDELLE 111 Query: 64 N---IRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMF 120 + + + L + + + + + I + L + Sbjct: 112 SGNQVFAELKTLTPLLERARYGIEFRCKRTIRQAMKQMQKIADSRGITRLGHFFILLELL 171 Query: 121 SHKKELIPLLFNSISTVSG--------KVERLISFDIAKRWYLRDIAERMYTSESLIKKK 172 + + L +++ + + I + L ++AE + + + Sbjct: 172 AASDDYQLLSGTAVAHTADEHSVDRTNRAVDYIFAHYGRELPLEEVAEYLGMKPTYFSRV 231 Query: 173 LQD-ENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPH 231 + CF + + R+S + LL P+ + + G+++ S F F+Q G+TP Sbjct: 232 FKQATGRCFVEFVNRLRISKSCELLADGDKPVTDVCFESGFNNISNFNRRFQQLKGMTPS 291 Query: 232 QFAQ 235 + + Sbjct: 292 HYRR 295 >UniRef50_C3R936 Transcriptional regulator n=2 Tax=Bacteroidales RepID=C3R936_9BACE Length = 286 Score = 133 bits (334), Expect = 6e-30, Method: Composition-based stats. Identities = 30/225 (13%), Positives = 74/225 (32%), Gaps = 11/225 (4%) Query: 25 LHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCHYLQNIRQLPRNLGLHSKDRL---- 80 ++L+ ++ + + + T + + ++ + + ++RL Sbjct: 60 FTAGDVVLIPPSMIHRWEYNADSTDEEGHVRYLMVAFSHSLLERCIEVFPELRNRLSGVQ 119 Query: 81 -----LINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMFSHKKEL-IPLLFNSI 134 L ++ I NE + + L + S P+ Sbjct: 120 FPTDALKFGLESSRIIRRILSEINEMDELERLSAMFRLLPVIFTSSDYTLAGKPMRIERD 179 Query: 135 STVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQD-ENTCFSKILLASRMSMAR 193 ++ + L DIAE + + S + + FS+ + R++ A Sbjct: 180 VRRMQQICAYVMKHYVHSIALDDIAEEVGMNRSAFCSYFKRCKGMTFSQFVTQYRLNTAC 239 Query: 194 RLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSP 238 LL+ Q + I G++ +F+ F G++P ++ + Sbjct: 240 HLLKNTQRGVAEICYMVGFNDLPHFVRVFTNTMGMSPTKYRKQYK 284 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.313 0.149 0.419 Lambda K H 0.267 0.0455 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,453,486,731 Number of Sequences: 3077464 Number of extensions: 80712131 Number of successful extensions: 358501 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 16116 Number of HSP's successfully gapped in prelim test: 2260 Number of HSP's that attempted gapping in prelim test: 314473 Number of HSP's gapped (non-prelim): 20970 length of query: 242 length of database: 1,040,396,356 effective HSP length: 125 effective length of query: 117 effective length of database: 655,713,356 effective search space: 76718462652 effective search space used: 76718462652 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (20.8 bits) S2: 91 (39.5 bits)