BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (183 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P52627 Protein fliZ n=82 Tax=Enterobacteriaceae RepID=F... 382 e-105 UniRef50_B4EYK2 FliZ protein n=31 Tax=Enterobacteriaceae RepID=B... 177 1e-43 UniRef50_C5BA91 Integrase domain protein SAM domain protein n=1 ... 157 1e-37 UniRef50_C6DKZ0 Protein FliZ n=9 Tax=Enterobacteriaceae RepID=C6... 137 2e-31 UniRef50_UPI000197CA7C flagella biosynthesis protein FliZ n=1 Ta... 122 5e-27 UniRef50_UPI0001C34656 flagella biosynthesis protein FliZ n=2 Ta... 96 6e-19 UniRef50_P52629 Protein fliZ (Fragment) n=18 Tax=Enterobacteriac... 76 5e-13 UniRef50_B4XWA0 Putative alternative sigma factor regulatory pro... 72 7e-12 UniRef50_Q4ACL3 Putative regulator of FliA (Fragment) n=1 Tax=Ed... 60 3e-08 >UniRef50_P52627 Protein fliZ n=82 Tax=Enterobacteriaceae RepID=FLIZ_ECOLI Length = 183 Score = 382 bits (982), Expect = e-105, Method: Compositional matrix adjust. Identities = 183/183 (100%), Positives = 183/183 (100%) Query: 1 MMVQHLKRRPLSRYLKDFKHSQTHCAHCRKLLDRITLVRDGKIVNKIEISRLDTLLDENG 60 MMVQHLKRRPLSRYLKDFKHSQTHCAHCRKLLDRITLVRDGKIVNKIEISRLDTLLDENG Sbjct: 1 MMVQHLKRRPLSRYLKDFKHSQTHCAHCRKLLDRITLVRDGKIVNKIEISRLDTLLDENG 60 Query: 61 WQTEQKSWAALCRFCGDLHCKTQSDFFDIIGFKQFLFEQTEMSPGTVREYVVRLRRLGNH 120 WQTEQKSWAALCRFCGDLHCKTQSDFFDIIGFKQFLFEQTEMSPGTVREYVVRLRRLGNH Sbjct: 61 WQTEQKSWAALCRFCGDLHCKTQSDFFDIIGFKQFLFEQTEMSPGTVREYVVRLRRLGNH 120 Query: 121 LHEQNISLDQLQDGFLDEILAPWLPTTSTNNYRIALRKYQHYQRQTCTRLVQKSSSLPSS 180 LHEQNISLDQLQDGFLDEILAPWLPTTSTNNYRIALRKYQHYQRQTCTRLVQKSSSLPSS Sbjct: 121 LHEQNISLDQLQDGFLDEILAPWLPTTSTNNYRIALRKYQHYQRQTCTRLVQKSSSLPSS 180 Query: 181 DIY 183 DIY Sbjct: 181 DIY 183 >UniRef50_B4EYK2 FliZ protein n=31 Tax=Enterobacteriaceae RepID=B4EYK2_PROMH Length = 176 Score = 177 bits (449), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 83/162 (51%), Positives = 113/162 (69%) Query: 1 MMVQHLKRRPLSRYLKDFKHSQTHCAHCRKLLDRITLVRDGKIVNKIEISRLDTLLDENG 60 M V K+RPLSRY+KD+KHSQTHC HC K LDRI+LV + +++NK IS + L+D+ Sbjct: 1 MSVSTQKKRPLSRYIKDYKHSQTHCLHCHKALDRISLVFNRQVINKEAISEMTDLIDDET 60 Query: 61 WQTEQKSWAALCRFCGDLHCKTQSDFFDIIGFKQFLFEQTEMSPGTVREYVVRLRRLGNH 120 W+T Q ++ALCRFC +++C +++D+FDI+ FKQ+LFEQTEMS TVREYVVRLRRL Sbjct: 61 WETLQGKFSALCRFCSEIYCNSETDYFDIMSFKQYLFEQTEMSHSTVREYVVRLRRLDEL 120 Query: 121 LHEQNISLDQLQDGFLDEILAPWLPTTSTNNYRIALRKYQHY 162 L N + + L+ L ++ +NY IALRKY+ Y Sbjct: 121 LTSTNFPRQEFTTEKIQSDLSKKLTPSAFSNYNIALRKYEQY 162 >UniRef50_C5BA91 Integrase domain protein SAM domain protein n=1 Tax=Edwardsiella ictaluri 93-146 RepID=C5BA91_EDWI9 Length = 172 Score = 157 bits (398), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 80/159 (50%), Positives = 107/159 (67%), Gaps = 8/159 (5%) Query: 7 KRRPLSRYLKDFKHSQTHCAHCRKLLDRITLVRDGKIVNKIEISRLDTLLDENGWQTEQK 66 + RPLSRYLKDFKH+Q C+HC + LDRI+LV DG ++N+ ++++ L+D+ GW Q+ Sbjct: 12 RHRPLSRYLKDFKHAQYQCSHCGRPLDRISLVLDGVLLNRDRQTQMERLIDDVGWAALQQ 71 Query: 67 SWAALCRFCGDLHCKTQSDFFDIIGFKQFLFEQTEMSPGTVREYVVRLRRLGNHL---HE 123 ALCRFC D++C FDI+GFKQ+L EQT+M ++REYVVRLRRL L Sbjct: 72 GLLALCRFCSDVYCHAHCSRFDIMGFKQYLCEQTDMRHSSIREYVVRLRRLDGLLTCHAP 131 Query: 124 QNISLDQLQDGFLDEILAPWLPTTSTNNYRIALRKYQHY 162 +++LD L + +L LP S NNYRIALRKYQ Y Sbjct: 132 PSMALDDLSERWL-----AGLPRCSQNNYRIALRKYQQY 165 >UniRef50_C6DKZ0 Protein FliZ n=9 Tax=Enterobacteriaceae RepID=C6DKZ0_PECCP Length = 171 Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 71/159 (44%), Positives = 98/159 (61%), Gaps = 4/159 (2%) Query: 7 KRRPLSRYLKDFKHSQTHCAHCRKLLDRITLVRDGKIVNKIEISRLDTLLDENGWQTEQK 66 K++ LSRYLKDFKH QT+C+ C K LDR++LV +++NK I +D L+D+ W Q+ Sbjct: 7 KKQLLSRYLKDFKHRQTNCSQCDKELDRVSLVFRNQLINKKSIGSIDRLIDDEIWSGLQQ 66 Query: 67 SWAALCRFCGDLHCKTQSDFFDIIGFKQFLFEQTEMSPGTVREYVVRLRRLGNHLHEQNI 126 LCRFC ++ C T + +FDI F Q+L EQTE+ T+REYV+RLRRL L N Sbjct: 67 ELIPLCRFCSEILCNTTASYFDIKAFTQYLIEQTEVRHSTMREYVIRLRRLDELLAANNY 126 Query: 127 SLDQL---QDGFLDEILAPWLPTTSTNNYRIALRKYQHY 162 + +DG + + + +LP N YR ALRKY Y Sbjct: 127 PAETFSRHRDG-VQQRVCDYLPDIEQNIYRSALRKYDQY 164 >UniRef50_UPI000197CA7C flagella biosynthesis protein FliZ n=1 Tax=Providencia rettgeri DSM 1131 RepID=UPI000197CA7C Length = 170 Score = 122 bits (307), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 61/157 (38%), Positives = 90/157 (57%) Query: 6 LKRRPLSRYLKDFKHSQTHCAHCRKLLDRITLVRDGKIVNKIEISRLDTLLDENGWQTEQ 65 +K PL YL+D+K +THCA+C K LDR +V +GKIV + +I+ L +D+ W Q Sbjct: 1 MKLYPLKSYLRDYKVQKTHCANCDKRLDRAFMVLNGKIVTRKDIANLTVRVDQQAWHDYQ 60 Query: 66 KSWAALCRFCGDLHCKTQSDFFDIIGFKQFLFEQTEMSPGTVREYVVRLRRLGNHLHEQN 125 K+ LCRFC ++ Q +FD+ GFKQ+L QTE+ T+ EY VRLRRL L N Sbjct: 61 KTLVVLCRFCSVIYSDVQPQYFDLWGFKQYLLYQTEIKDSTIHEYTVRLRRLDALLTAWN 120 Query: 126 ISLDQLQDGFLDEILAPWLPTTSTNNYRIALRKYQHY 162 + + + + L + NN + AL++YQ + Sbjct: 121 FTEKHFSYPLIKQRITAKLKGQTLNNMQHALKQYQAF 157 >UniRef50_UPI0001C34656 flagella biosynthesis protein FliZ n=2 Tax=Providencia rettgeri DSM 1131 RepID=UPI0001C34656 Length = 168 Score = 95.9 bits (237), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 53/155 (34%), Positives = 78/155 (50%), Gaps = 1/155 (0%) Query: 9 RPLSRYLKDFKHSQTHCAHCRKLLDRITLVRDGKIVNKIEISRLDTLLDENGW-QTEQKS 67 R L YL +FK QTHC+ C+ L R++L +G+ + K +I+ + L+DE W + Sbjct: 2 RSLKYYLIEFKQKQTHCSSCQTRLQRVSLCLNGEAIGKRQINAMRQLIDEATWIELRDCR 61 Query: 68 WAALCRFCGDLHCKTQSDFFDIIGFKQFLFEQTEMSPGTVREYVVRLRRLGNHLHEQNIS 127 LCRFC L +FD+IGF + L + M V EYV RLRRL L +++ Sbjct: 62 LQGLCRFCCALSTSPHPVYFDLIGFYRSLLLHSSMKLSAVHEYVARLRRLETLLVSSHLA 121 Query: 128 LDQLQDGFLDEILAPWLPTTSTNNYRIALRKYQHY 162 + + G + +I+ L N AL KY Y Sbjct: 122 ISEYHRGMVSKIVVNHLSGAILKNTISALNKYDAY 156 >UniRef50_P52629 Protein fliZ (Fragment) n=18 Tax=Enterobacteriaceae RepID=FLIZ_YEREN Length = 66 Score = 75.9 bits (185), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 34/60 (56%), Positives = 44/60 (73%) Query: 6 LKRRPLSRYLKDFKHSQTHCAHCRKLLDRITLVRDGKIVNKIEISRLDTLLDENGWQTEQ 65 LK+RPLSRYLKD+KH QTHC+HC K LDR+ LV G+I+NK I+ +D +D+ W Q Sbjct: 6 LKKRPLSRYLKDYKHGQTHCSHCHKQLDRMALVFRGQIINKEAIAGMDQPIDDQVWSKLQ 65 >UniRef50_B4XWA0 Putative alternative sigma factor regulatory protein (Fragment) n=1 Tax=Brenneria nigrifluens RepID=B4XWA0_9ENTR Length = 98 Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 34/90 (37%), Positives = 53/90 (58%) Query: 73 RFCGDLHCKTQSDFFDIIGFKQFLFEQTEMSPGTVREYVVRLRRLGNHLHEQNISLDQLQ 132 RFC ++ C T +++F+I F Q+L +QTE+ T+REY +RLRRL L + + + Sbjct: 2 RFCSEILCHTYANYFNIKAFTQYLIKQTEVKHSTMREYAIRLRRLDEQLVAKRLPKESFA 61 Query: 133 DGFLDEILAPWLPTTSTNNYRIALRKYQHY 162 G + + + +LP +YR ALRKY Y Sbjct: 62 VGNIQKHIHDYLPDIDHASYRSALRKYDQY 91 >UniRef50_Q4ACL3 Putative regulator of FliA (Fragment) n=1 Tax=Edwardsiella tarda RepID=Q4ACL3_EDWTA Length = 70 Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 25/38 (65%), Positives = 32/38 (84%) Query: 8 RRPLSRYLKDFKHSQTHCAHCRKLLDRITLVRDGKIVN 45 RRPLSRYLKDFKH+Q +C+HC + LDR +LV DG ++N Sbjct: 13 RRPLSRYLKDFKHAQCYCSHCGRPLDRFSLVLDGTLLN 50 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P52627 Protein fliZ n=82 Tax=Enterobacteriaceae RepID=F... 276 2e-73 UniRef50_B4EYK2 FliZ protein n=31 Tax=Enterobacteriaceae RepID=B... 235 5e-61 UniRef50_UPI000197CA7C flagella biosynthesis protein FliZ n=1 Ta... 219 4e-56 UniRef50_C6DKZ0 Protein FliZ n=9 Tax=Enterobacteriaceae RepID=C6... 216 3e-55 UniRef50_C5BA91 Integrase domain protein SAM domain protein n=1 ... 214 1e-54 UniRef50_UPI0001C34656 flagella biosynthesis protein FliZ n=2 Ta... 201 1e-50 UniRef50_B4XWA0 Putative alternative sigma factor regulatory pro... 127 2e-28 UniRef50_P52629 Protein fliZ (Fragment) n=18 Tax=Enterobacteriac... 99 9e-20 UniRef50_Q4ACL3 Putative regulator of FliA (Fragment) n=1 Tax=Ed... 72 6e-12 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_P52627 Protein fliZ n=82 Tax=Enterobacteriaceae RepID=FLIZ_ECOLI Length = 183 Score = 276 bits (707), Expect = 2e-73, Method: Composition-based stats. Identities = 183/183 (100%), Positives = 183/183 (100%) Query: 1 MMVQHLKRRPLSRYLKDFKHSQTHCAHCRKLLDRITLVRDGKIVNKIEISRLDTLLDENG 60 MMVQHLKRRPLSRYLKDFKHSQTHCAHCRKLLDRITLVRDGKIVNKIEISRLDTLLDENG Sbjct: 1 MMVQHLKRRPLSRYLKDFKHSQTHCAHCRKLLDRITLVRDGKIVNKIEISRLDTLLDENG 60 Query: 61 WQTEQKSWAALCRFCGDLHCKTQSDFFDIIGFKQFLFEQTEMSPGTVREYVVRLRRLGNH 120 WQTEQKSWAALCRFCGDLHCKTQSDFFDIIGFKQFLFEQTEMSPGTVREYVVRLRRLGNH Sbjct: 61 WQTEQKSWAALCRFCGDLHCKTQSDFFDIIGFKQFLFEQTEMSPGTVREYVVRLRRLGNH 120 Query: 121 LHEQNISLDQLQDGFLDEILAPWLPTTSTNNYRIALRKYQHYQRQTCTRLVQKSSSLPSS 180 LHEQNISLDQLQDGFLDEILAPWLPTTSTNNYRIALRKYQHYQRQTCTRLVQKSSSLPSS Sbjct: 121 LHEQNISLDQLQDGFLDEILAPWLPTTSTNNYRIALRKYQHYQRQTCTRLVQKSSSLPSS 180 Query: 181 DIY 183 DIY Sbjct: 181 DIY 183 >UniRef50_B4EYK2 FliZ protein n=31 Tax=Enterobacteriaceae RepID=B4EYK2_PROMH Length = 176 Score = 235 bits (600), Expect = 5e-61, Method: Composition-based stats. Identities = 83/162 (51%), Positives = 113/162 (69%) Query: 1 MMVQHLKRRPLSRYLKDFKHSQTHCAHCRKLLDRITLVRDGKIVNKIEISRLDTLLDENG 60 M V K+RPLSRY+KD+KHSQTHC HC K LDRI+LV + +++NK IS + L+D+ Sbjct: 1 MSVSTQKKRPLSRYIKDYKHSQTHCLHCHKALDRISLVFNRQVINKEAISEMTDLIDDET 60 Query: 61 WQTEQKSWAALCRFCGDLHCKTQSDFFDIIGFKQFLFEQTEMSPGTVREYVVRLRRLGNH 120 W+T Q ++ALCRFC +++C +++D+FDI+ FKQ+LFEQTEMS TVREYVVRLRRL Sbjct: 61 WETLQGKFSALCRFCSEIYCNSETDYFDIMSFKQYLFEQTEMSHSTVREYVVRLRRLDEL 120 Query: 121 LHEQNISLDQLQDGFLDEILAPWLPTTSTNNYRIALRKYQHY 162 L N + + L+ L ++ +NY IALRKY+ Y Sbjct: 121 LTSTNFPRQEFTTEKIQSDLSKKLTPSAFSNYNIALRKYEQY 162 >UniRef50_UPI000197CA7C flagella biosynthesis protein FliZ n=1 Tax=Providencia rettgeri DSM 1131 RepID=UPI000197CA7C Length = 170 Score = 219 bits (557), Expect = 4e-56, Method: Composition-based stats. Identities = 62/164 (37%), Positives = 92/164 (56%) Query: 6 LKRRPLSRYLKDFKHSQTHCAHCRKLLDRITLVRDGKIVNKIEISRLDTLLDENGWQTEQ 65 +K PL YL+D+K +THCA+C K LDR +V +GKIV + +I+ L +D+ W Q Sbjct: 1 MKLYPLKSYLRDYKVQKTHCANCDKRLDRAFMVLNGKIVTRKDIANLTVRVDQQAWHDYQ 60 Query: 66 KSWAALCRFCGDLHCKTQSDFFDIIGFKQFLFEQTEMSPGTVREYVVRLRRLGNHLHEQN 125 K+ LCRFC ++ Q +FD+ GFKQ+L QTE+ T+ EY VRLRRL L N Sbjct: 61 KTLVVLCRFCSVIYSDVQPQYFDLWGFKQYLLYQTEIKDSTIHEYTVRLRRLDALLTAWN 120 Query: 126 ISLDQLQDGFLDEILAPWLPTTSTNNYRIALRKYQHYQRQTCTR 169 + + + + L + NN + AL++YQ + T+ Sbjct: 121 FTEKHFSYPLIKQRITAKLKGQTLNNMQHALKQYQAFHVHQNTK 164 >UniRef50_C6DKZ0 Protein FliZ n=9 Tax=Enterobacteriaceae RepID=C6DKZ0_PECCP Length = 171 Score = 216 bits (549), Expect = 3e-55, Method: Composition-based stats. Identities = 70/164 (42%), Positives = 96/164 (58%), Gaps = 2/164 (1%) Query: 1 MMVQHLKRRPLSRYLKDFKHSQTHCAHCRKLLDRITLVRDGKIVNKIEISRLDTLLDENG 60 M K++ LSRYLKDFKH QT+C+ C K LDR++LV +++NK I +D L+D+ Sbjct: 1 MHPSIRKKQLLSRYLKDFKHRQTNCSQCDKELDRVSLVFRNQLINKKSIGSIDRLIDDEI 60 Query: 61 WQTEQKSWAALCRFCGDLHCKTQSDFFDIIGFKQFLFEQTEMSPGTVREYVVRLRRLGNH 120 W Q+ LCRFC ++ C T + +FDI F Q+L EQTE+ T+REYV+RLRRL Sbjct: 61 WSGLQQELIPLCRFCSEILCNTTASYFDIKAFTQYLIEQTEVRHSTMREYVIRLRRLDEL 120 Query: 121 LHEQNISLDQL--QDGFLDEILAPWLPTTSTNNYRIALRKYQHY 162 L N + + + + +LP N YR ALRKY Y Sbjct: 121 LAANNYPAETFSRHRDGVQQRVCDYLPDIEQNIYRSALRKYDQY 164 >UniRef50_C5BA91 Integrase domain protein SAM domain protein n=1 Tax=Edwardsiella ictaluri 93-146 RepID=C5BA91_EDWI9 Length = 172 Score = 214 bits (545), Expect = 1e-54, Method: Composition-based stats. Identities = 80/165 (48%), Positives = 108/165 (65%), Gaps = 8/165 (4%) Query: 1 MMVQHLKRRPLSRYLKDFKHSQTHCAHCRKLLDRITLVRDGKIVNKIEISRLDTLLDENG 60 + + RPLSRYLKDFKH+Q C+HC + LDRI+LV DG ++N+ ++++ L+D+ G Sbjct: 6 ISPSDNRHRPLSRYLKDFKHAQYQCSHCGRPLDRISLVLDGVLLNRDRQTQMERLIDDVG 65 Query: 61 WQTEQKSWAALCRFCGDLHCKTQSDFFDIIGFKQFLFEQTEMSPGTVREYVVRLRRLGNH 120 W Q+ ALCRFC D++C FDI+GFKQ+L EQT+M ++REYVVRLRRL Sbjct: 66 WAALQQGLLALCRFCSDVYCHAHCSRFDIMGFKQYLCEQTDMRHSSIREYVVRLRRLDGL 125 Query: 121 LH---EQNISLDQLQDGFLDEILAPWLPTTSTNNYRIALRKYQHY 162 L +++LD L + +L LP S NNYRIALRKYQ Y Sbjct: 126 LTCHAPPSMALDDLSERWL-----AGLPRCSQNNYRIALRKYQQY 165 >UniRef50_UPI0001C34656 flagella biosynthesis protein FliZ n=2 Tax=Providencia rettgeri DSM 1131 RepID=UPI0001C34656 Length = 168 Score = 201 bits (510), Expect = 1e-50, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 78/155 (50%), Gaps = 1/155 (0%) Query: 9 RPLSRYLKDFKHSQTHCAHCRKLLDRITLVRDGKIVNKIEISRLDTLLDENGW-QTEQKS 67 R L YL +FK QTHC+ C+ L R++L +G+ + K +I+ + L+DE W + Sbjct: 2 RSLKYYLIEFKQKQTHCSSCQTRLQRVSLCLNGEAIGKRQINAMRQLIDEATWIELRDCR 61 Query: 68 WAALCRFCGDLHCKTQSDFFDIIGFKQFLFEQTEMSPGTVREYVVRLRRLGNHLHEQNIS 127 LCRFC L +FD+IGF + L + M V EYV RLRRL L +++ Sbjct: 62 LQGLCRFCCALSTSPHPVYFDLIGFYRSLLLHSSMKLSAVHEYVARLRRLETLLVSSHLA 121 Query: 128 LDQLQDGFLDEILAPWLPTTSTNNYRIALRKYQHY 162 + + G + +I+ L N AL KY Y Sbjct: 122 ISEYHRGMVSKIVVNHLSGAILKNTISALNKYDAY 156 >UniRef50_B4XWA0 Putative alternative sigma factor regulatory protein (Fragment) n=1 Tax=Brenneria nigrifluens RepID=B4XWA0_9ENTR Length = 98 Score = 127 bits (319), Expect = 2e-28, Method: Composition-based stats. Identities = 34/90 (37%), Positives = 53/90 (58%) Query: 73 RFCGDLHCKTQSDFFDIIGFKQFLFEQTEMSPGTVREYVVRLRRLGNHLHEQNISLDQLQ 132 RFC ++ C T +++F+I F Q+L +QTE+ T+REY +RLRRL L + + + Sbjct: 2 RFCSEILCHTYANYFNIKAFTQYLIKQTEVKHSTMREYAIRLRRLDEQLVAKRLPKESFA 61 Query: 133 DGFLDEILAPWLPTTSTNNYRIALRKYQHY 162 G + + + +LP +YR ALRKY Y Sbjct: 62 VGNIQKHIHDYLPDIDHASYRSALRKYDQY 91 >UniRef50_P52629 Protein fliZ (Fragment) n=18 Tax=Enterobacteriaceae RepID=FLIZ_YEREN Length = 66 Score = 98.6 bits (244), Expect = 9e-20, Method: Composition-based stats. Identities = 34/60 (56%), Positives = 44/60 (73%) Query: 6 LKRRPLSRYLKDFKHSQTHCAHCRKLLDRITLVRDGKIVNKIEISRLDTLLDENGWQTEQ 65 LK+RPLSRYLKD+KH QTHC+HC K LDR+ LV G+I+NK I+ +D +D+ W Q Sbjct: 6 LKKRPLSRYLKDYKHGQTHCSHCHKQLDRMALVFRGQIINKEAIAGMDQPIDDQVWSKLQ 65 >UniRef50_Q4ACL3 Putative regulator of FliA (Fragment) n=1 Tax=Edwardsiella tarda RepID=Q4ACL3_EDWTA Length = 70 Score = 72.4 bits (176), Expect = 6e-12, Method: Composition-based stats. Identities = 25/38 (65%), Positives = 32/38 (84%) Query: 8 RRPLSRYLKDFKHSQTHCAHCRKLLDRITLVRDGKIVN 45 RRPLSRYLKDFKH+Q +C+HC + LDR +LV DG ++N Sbjct: 13 RRPLSRYLKDFKHAQCYCSHCGRPLDRFSLVLDGTLLN 50 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.311 0.132 0.365 Lambda K H 0.267 0.0407 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 690,915,014 Number of Sequences: 3077464 Number of extensions: 24252037 Number of successful extensions: 94938 Number of sequences better than 1.0e-01: 9 Number of HSP's better than 0.1 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 94914 Number of HSP's gapped (non-prelim): 18 length of query: 183 length of database: 1,040,396,356 effective HSP length: 121 effective length of query: 62 effective length of database: 668,023,212 effective search space: 41417439144 effective search space used: 41417439144 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (20.9 bits) S2: 89 (38.9 bits)