35 c3polA_ Probab=99.81   E-value=3e-18  Score=129.22  Aligned_columns=229  Identities=14%

Q ss_pred             CCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCE
Q ss_conf             88862799933888723564455689830155088971899999899708998099990746388999987412756835
Q batch____         2 AQSKLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQHRFIVAEQLRQLNKLTEN   81 (478)
Q Consensus         2 ~~~~i~~VILAGG~GTRLwPLSr~~~PKqll~l~G~ksllq~ti~rl~~~g~~~i~vvt~~~~~~~v~~ql~~~~~~~~~   81 (478)
                      +++....||+|||.|||| |      ||||+++.| ||||+++++++...|+.+.++|+++. .+..........  ...
T Consensus         7 ~~~~~~vIi~A~~~s~Rl-~------~K~Ll~v~G-kpli~~~i~~l~~~~~~~~iiVv~~~-~~~~~~~~~~~~--~~~   75 (262)
T c3polA_           7 DKHMKHIVIPARFSSSRL-P------GKPLLLIHD-RPMILRVVDQAKKVEGFDDLCVATDD-ERIAEICRAEGV--DVV   75 (262)
T ss_dssp             TCCCEEEEEECCSCCTTS-T------TGGGSEETT-EEHHHHHHHHHTTCCSCSEEEEEESC-HHHHHHHHTTTC--EEE
T ss_pred             HCCCEEEEEECCCCCCCC-C------CCEEEEECC-EEHHHHHHHHHHHCCCCCEEEEECCH-HHHHHHHHHCCC--CEE
T ss_conf             088759999448778899-8------711443685-65799999999848998289997695-888999975399--499


Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCE--
Q ss_conf             998075578389999999999751788882699970881315748999999999985214977999987447888750--
Q batch____        82 IILEPAGRNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFGIVPDLPETGYG--  159 (478)
Q Consensus        82 ii~Ep~~rgTA~AI~~aa~~i~~~~~~~d~~vlVlpaDh~I~~~~~f~~~l~~a~~~a~~g~ivt~Gi~P~~p~tgYG--  159 (478)
                      +..++...+|..++..+.......    ++.++++.+|+++.+...+..++..+..  .....+...+.+......|+  
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~~~~~d~p~i~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  149 (262)
T c3polA_          76 LTSADHPSGTDRLSEVARIKGWDA----DDIIVNVQGDEPLLPAQLVQQVAKLLVD--KPNCSMSTLCEPIHALDEFQRD  149 (262)
T ss_dssp             ECCSCCCCHHHHHHHHHHHHTCCT----TCEEEECCTTCTTCCHHHHHHHHHHHHH--CTTCSEEEEEEECCCHHHHHCT
T ss_pred             EECCCCCCCHHHHHHHHHHHCCCC----CCEEEEEECCCEEECHHHHHHHHHHHHH--CCCCEEEEEEEECCCHHHCCCC
T ss_conf             964887651268999998500468----9889998289533359999999999997--6993575644540487670677


Q ss_pred             ---EEEECCCCCCCCCCCCEEEEEEEECCCH-----HHHHHHHHCCCEEEECCEEEEEHHHHHHHHHHHCHHHHHHHHHH
Q ss_conf             ---8995775544445664145789977997-----79889864498389875987519999999998875689999999
Q batch____       160 ---YIRRGEVSAGEQDMVAFEVAQFVEKPNL-----ETAQAYVASGEYYWNSGMFLFRAGRYLEELKKYRPDILDACEKA  231 (478)
Q Consensus       160 ---yI~~~~~~~~~~~~~~~~V~~FvEKP~~-----e~A~~~l~~g~ylwNsGifvf~~~~ll~~l~~~~P~i~~~~~~~  231 (478)
                         .+..+..+         .+..|-++|..     ...........|++|+|+|.|....+                  
T Consensus       150 ~~~~~~~~~~g---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l------------------  202 (262)
T c3polA_         150 SIVKVVMSKQN---------EALYFSRATIPYDRDGAKRDEPTLHTQAFRHLGLYAYRVSLL------------------  202 (262)
T ss_dssp             TSCEEEECSSS---------BEEEEESSCCSCCSSSSSSSSCCCCSCCEEEEEEEEEEHHHH------------------
T ss_pred             CCEEEEECCCC---------CEEEEECCCCCCCCCCCHHHHHHCCCHHHHHCCHHHHHHHHH------------------
T ss_conf             71289986899---------587730234422222101232201210121112133229999------------------


Q ss_pred             HHHCCCCCCCEECCHHHHHHCCCCCCEE-------EEEECCCCEEEEEEECC-CCCCCCHHHHHHH
Q ss_conf             8513677430010467886386655103-------45650385699983030-2544599999885
Q batch____       232 MSAVDPDLNFIRVDEEAFLACPEESVDY-------AVMERTADAVVVPMDAG-WSDVGSWSSLWEI  289 (478)
Q Consensus       232 ~~~~~~~~~~~~l~~~~f~~~~~~SiDy-------avmEk~~~v~vv~~~~~-W~DvGsw~al~e~  289 (478)
                                     ..|...+......       -++++..++.+++.+.. |-||++++.|..+
T Consensus       203 ---------------~~~~~~~~~~~e~~~~~~~l~~i~~g~~v~~~~~~~~~~~dIdtpeDL~~a  253 (262)
T c3polA_         203 ---------------QEYVTWEMGKLEKLESLEQLRVLENGHRIAIAVAEANLPPGVDTQADLDRL  253 (262)
T ss_dssp             ---------------HHHTTSCCCHHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHH
T ss_pred             ---------------HHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHH
T ss_conf             ---------------987604876201344577899996898069998162020068899999999