Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		L	I	S	G	R	H	D	R	K	P	Y	Y	A	G	E	A	A	I	M	A	I	N	S	P	L	N	I	A	A	Q	P	G	K	T	R	L	R	K	S	L	K	L	W	Q	V	V	M	M	G	L	A	Y	L	T	P	M	T	V	F	D
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		T	F	G	I	V	S	G	I	S	D	G	H	V	P	A	S	Y	L	L	A	L	A	G	V	L	F	T	A	I	S	Y	G	K	L	V	R	Q	F	P	E	A	G	S	A	Y	T	Y	A	Q	K	S	I	N	P	H	V	G	F	M	V
Secondary structure
SS confidence
Disorder																																					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		G	W	S	S	L	L	D	Y	L	F	L	P	M	I	N	V	L	L	A	K	I	Y	L	S	A	L	F	P	E	V	P	P	W	V	W	V	V	T	F	V	A	I	L	T	A	A	N	L	K	S	V	N	L	V	A	N	F	N	T	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		F	V	L	V	Q	I	S	I	M	V	V	F	I	F	L	V	V	Q	G	L	H	K	G	E	G	V	G	T	V	W	S	L	Q	P	F	I	S	E	N	A	H	L	I	P	I	I	T	G	A	T	I	V	C	F	S	F	L	G	F	D
Secondary structure
SS confidence
Disorder																									?	?	?	?					?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		A	V	T	T	L	S	E	E	T	P	D	A	A	R	V	I	P	K	A	I	F	L	T	A	V	Y	G	G	V	I	F	I	A	A	S	F	F	M	Q	L	F	F	P	D	I	S	R	F	K	D	P	D	A	A	L	P	E	I	A	L
Secondary structure
SS confidence
Disorder																																															?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		Y	V	G	G	K	L	F	Q	S	I	F	L	C	T	T	F	V	N	T	L	A	S	G	L	A	S	H	A	S	V	S	R	L	L	Y	V	M	G	R	D	N	V	F	P	E	R	V	F	G	Y	V	H	P	K	W	R	T	P	A	L
Secondary structure
SS confidence
Disorder																														?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		N	V	I	M	V	G	I	V	A	L	S	A	L	F	F	D	L	V	T	A	T	A	L	I	N	F	G	A	L	V	A	F	T	F	V	N	L	S	V	F	N	H	F	W	R	R	K	G	M	N	K	S	W	K	D	H	F	H	Y	L
Secondary structure
SS confidence
Disorder																?																																	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.
Sequence		L	M	P	L	V	G	A	L	T	V	G	V	L	W	V	N	L	E	S	T	S	L	T	L	G	L	V	W	A	S	L	G	G	A	Y	L	W	Y	L	I	R	R	Y	R	K	V	P	L	Y	D	G	D	R	T	P	V	S	E	T
Secondary structure
SS confidence
Disorder																																														?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3gia chain A Region: 37 - 472 Aligned: 422 Modelled: 422 Confidence: 100.0% Identity: 18% PDB header:transport protein Chain: A: PDB Molecule:uncharacterized protein mj0609; PDBTitle: crystal structure of apct transporter Phyre2 PDB 3lrc chain C Region: 37 - 467 Aligned: 397 Modelled: 397 Confidence: 100.0% Identity: 17% PDB header:transport protein Chain: C: PDB Molecule:arginine/agmatine antiporter; PDBTitle: structure of e. coli adic (p1) Phyre2 PDB 2jln chain A Region: 21 - 478 Aligned: 450 Modelled: 450 Confidence: 100.0% Identity: 10% PDB header:membrane protein Chain: A: PDB Molecule:mhp1; PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter Phyre2 PDB 2xq2 chain A Region: 38 - 478 Aligned: 424 Modelled: 424 Confidence: 99.1% Identity: 10% PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: structure of the k294a mutant of vsglt Phyre2 PDB 3dh4 chain A Region: 38 - 479 Aligned: 426 Modelled: 426 Confidence: 99.1% Identity: 10% PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus Phyre2 PDB 2w8a chain C Region: 32 - 415 Aligned: 375 Modelled: 384 Confidence: 94.6% Identity: 11% PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate Phyre2 PDB 2a65 chain A domain 1 Region: 41 - 465 Aligned: 418 Modelled: 418 Confidence: 91.6% Identity: 11% Fold: SNF-like Superfamily: SNF-like Family: SNF-like Phyre2 PDB 3hfx chain A Region: 26 - 412 Aligned: 377 Modelled: 383 Confidence: 78.7% Identity: 11% PDB header:transport protein Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter; PDBTitle: crystal structure of carnitine transporter Phyre2 PDB 3qnq chain D Region: 427 - 478 Aligned: 52 Modelled: 52 Confidence: 51.3% Identity: 17% PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system Phyre2 PDB 1fft chain B domain 2 Region: 434 - 479 Aligned: 46 Modelled: 46 Confidence: 46.2% Identity: 15% Fold: Transmembrane helix hairpin Superfamily: Cytochrome c oxidase subunit II-like, transmembrane region Family: Cytochrome c oxidase subunit II-like, transmembrane region Phyre2 PDB 2klu chain A Region: 444 - 469 Aligned: 26 Modelled: 26 Confidence: 37.6% Identity: 12% PDB header:immune system, membrane protein Chain: A: PDB Molecule:t-cell surface glycoprotein cd4; PDBTitle: nmr structure of the transmembrane and cytoplasmic domains2 of human cd4 Phyre2 PDB 2kvt chain A Region: 9 - 29 Aligned: 21 Modelled: 21 Confidence: 11.0% Identity: 33% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein yaia; PDBTitle: solution nmr structure of yaia from escherichia eoli. northeast2 structural genomics target er244 Phyre2 PDB 3le4 chain A Region: 8 - 29 Aligned: 22 Modelled: 22 Confidence: 10.9% Identity: 27% PDB header:nuclear protein Chain: A: PDB Molecule:microprocessor complex subunit dgcr8; PDBTitle: crystal structure of the dgcr8 dimerization domain Phyre2 PDB 1qhd chain A domain 2 Region: 17 - 41 Aligned: 25 Modelled: 25 Confidence: 10.7% Identity: 32% Fold: Viral protein domain Superfamily: Viral protein domain Family: Top domain of virus capsid protein Phyre2 PDB 1ujl chain A Region: 30 - 51 Aligned: 22 Modelled: 22 Confidence: 10.3% Identity: 0% PDB header:membrane protein Chain: A: PDB Molecule:potassium voltage-gated channel subfamily h PDBTitle: solution structure of the herg k+ channel s5-p2 extracellular linker Phyre2 PDB 3rko chain F Region: 355 - 469 Aligned: 115 Modelled: 115 Confidence: 9.6% Identity: 12% PDB header:oxidoreductase Chain: F: PDB Molecule:nadh-quinone oxidoreductase subunit j; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution Phyre2 PDB 1zgx chain B Region: 2 - 19 Aligned: 18 Modelled: 18 Confidence: 9.2% Identity: 28% PDB header:hydrolase Chain: B: PDB Molecule:guanyl-specific ribonuclease sa; PDBTitle: crystal structure of ribonuclease mutant Phyre2 PDB 3bcy chain A Region: 6 - 40 Aligned: 35 Modelled: 35 Confidence: 8.8% Identity: 17% PDB header:unknown function Chain: A: PDB Molecule:protein yer067w; PDBTitle: crystal structure of yer067w Phyre2 PDB 2l1n chain A Region: 29 - 42 Aligned: 14 Modelled: 14 Confidence: 8.5% Identity: 29% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of the protein yp_399305.1 Phyre2 PDB 2elm chain A Region: 3 - 21 Aligned: 19 Modelled: 19 Confidence: 8.4% Identity: 21% PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 406; PDBTitle: solution structure of the 10th c2h2 zinc finger of human2 zinc finger protein 406 Phyre2 1 c3giaA_ 2 c3lrcC_ 3 c2jlnA_ 4 c2xq2A_ 5 c3dh4A_ 6 c2w8aC_ 7 d2a65a1 8 c3hfxA_ 9 c3qnqD_ 10 d1fftb2 11 c2kluA_ 12 c2kvtA_ 13 c3le4A_ 14 d1qhda2 15 c1ujlA_ 16 c3rkoF_ 17 c1zgxB_ 18 c3bcyA_ 19 c2l1nA_ 20 c2elmA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3giaA_ 100.0 18 PDB header:transport protein Chain: A: PDB Molecule:uncharacterized protein mj0609; PDBTitle: crystal structure of apct transporter 2 c3lrcC_ 100.0 17 PDB header:transport protein Chain: C: PDB Molecule:arginine/agmatine antiporter; PDBTitle: structure of e. coli adic (p1) 3 c2jlnA_ 100.0 10 PDB header:membrane protein Chain: A: PDB Molecule:mhp1; PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter 4 c2xq2A_ 99.1 10 PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: structure of the k294a mutant of vsglt 5 c3dh4A_ 99.1 10 PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus 6 c2w8aC_ 94.6 11 PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate 7 d2a65a1 91.6 11 Fold:SNF-like Superfamily:SNF-like Family:SNF-like 8 c3hfxA_ 78.7 11 PDB header:transport protein Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter; PDBTitle: crystal structure of carnitine transporter 9 c3qnqD_ 51.3 17 PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system 10 d1fftb2 46.2 15 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 11 c2kluA_ 37.6 12 PDB header:immune system, membrane protein Chain: A: PDB Molecule:t-cell surface glycoprotein cd4; PDBTitle: nmr structure of the transmembrane and cytoplasmic domains2 of human cd4 12 c2kvtA_ 11.0 33 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein yaia; PDBTitle: solution nmr structure of yaia from escherichia eoli. northeast2 structural genomics target er244 13 c3le4A_ 10.9 27 PDB header:nuclear protein Chain: A: PDB Molecule:microprocessor complex subunit dgcr8; PDBTitle: crystal structure of the dgcr8 dimerization domain 14 d1qhda2 10.7 32 Fold:Viral protein domain Superfamily:Viral protein domain Family:Top domain of virus capsid protein 15 c1ujlA_ 10.3 0 PDB header:membrane protein Chain: A: PDB Molecule:potassium voltage-gated channel subfamily h PDBTitle: solution structure of the herg k+ channel s5-p2 extracellular linker 16 c3rkoF_ 9.6 12 PDB header:oxidoreductase Chain: F: PDB Molecule:nadh-quinone oxidoreductase subunit j; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 17 c1zgxB_ 9.2 28 PDB header:hydrolase Chain: B: PDB Molecule:guanyl-specific ribonuclease sa; PDBTitle: crystal structure of ribonuclease mutant 18 c3bcyA_ 8.8 17 PDB header:unknown function Chain: A: PDB Molecule:protein yer067w; PDBTitle: crystal structure of yer067w 19 c2l1nA_ 8.5 29 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of the protein yp_399305.1 20 c2elmA_ 8.4 21 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 406; PDBTitle: solution structure of the 10th c2h2 zinc finger of human2 zinc finger protein 406 21 c2rddB_ not modelled 8.0 22 PDB header:membrane protein/transport protein Chain: B: PDB Molecule:upf0092 membrane protein yajc; PDBTitle: x-ray crystal structure of acrb in complex with a novel2 transmembrane helix. 22 c2v6xB_ not modelled 7.8 25 PDB header:protein transport Chain: B: PDB Molecule:doa4-independent degradation protein 4; PDBTitle: stractural insight into the interaction between escrt-iii2 and vps4 23 d1eg3a3 not modelled 7.6 33 Fold:WW domain-like Superfamily:WW domain Family:WW domain 24 c3m7bA_ not modelled 7.4 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:tellurite resistance protein teha homolog; PDBTitle: crystal structure of plant slac1 homolog teha 25 c2owrD_ not modelled 7.4 17 PDB header:hydrolase Chain: D: PDB Molecule:uracil-dna glycosylase; PDBTitle: crystal structure of vaccinia virus uracil-dna glycosylase 26 c2wmpB_ not modelled 7.3 29 PDB header:chaperone Chain: B: PDB Molecule:papg protein; PDBTitle: structure of the e. coli chaperone papd in complex with the pilin2 domain of the papgii adhesin 27 d1p35a_ not modelled 7.3 23 Fold:Baculovirus p35 protein Superfamily:Baculovirus p35 protein Family:Baculovirus p35 protein 28 c2i6kA_ not modelled 7.2 29 PDB header:isomerase Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 1; PDBTitle: crystal structure of human type i ipp isomerase complexed2 with a substrate analog 29 d2r6gf1 not modelled 7.2 14 Fold:MalF N-terminal region-like Superfamily:MalF N-terminal region-like Family:MalF N-terminal region-like 30 d2oara1 not modelled 6.8 10 Fold:Gated mechanosensitive channel Superfamily:Gated mechanosensitive channel Family:Gated mechanosensitive channel 31 c2gfpA_ not modelled 6.8 6 PDB header:membrane protein Chain: A: PDB Molecule:multidrug resistance protein d; PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli 32 d2iuba2 not modelled 6.7 5 Fold:Transmembrane helix hairpin Superfamily:Magnesium transport protein CorA, transmembrane region Family:Magnesium transport protein CorA, transmembrane region 33 c2y69Z_ not modelled 6.7 24 PDB header:electron transport Chain: Z: PDB Molecule:cytochrome c oxidase polypeptide 8h; PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular2 oxygen 34 c1qo8A_ not modelled 6.6 18 PDB header:oxidoreductase Chain: A: PDB Molecule:flavocytochrome c3 fumarate reductase; PDBTitle: the structure of the open conformation of a flavocytochrome2 c3 fumarate reductase 35 d1qmha2 not modelled 6.5 23 Fold:IF3-like Superfamily:EPT/RTPC-like Family:RNA 3'-terminal phosphate cyclase, RPTC 36 c2kncA_ not modelled 6.5 8 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 37 c1qhdA_ not modelled 6.5 32 PDB header:viral protein Chain: A: PDB Molecule:viral capsid vp6; PDBTitle: crystal structure of vp6, the major capsid protein of group a2 rotavirus 38 c3kz5E_ not modelled 6.5 44 PDB header:dna binding protein Chain: E: PDB Molecule:protein sopb; PDBTitle: structure of cdomain 39 d1roca_ not modelled 6.4 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:ASF1-like Family:ASF1-like 40 d1kp6a_ not modelled 6.4 21 Fold:Ferredoxin-like Superfamily:Killer toxin KP6 alpha-subunit Family:Killer toxin KP6 alpha-subunit 41 d2joza1 not modelled 6.4 15 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 42 c3c0fB_ not modelled 6.4 36 PDB header:unknown function Chain: B: PDB Molecule:uncharacterized protein af_1514; PDBTitle: crystal structure of a novel non-pfam protein af1514 from archeoglobus2 fulgidus dsm 4304 solved by s-sad using a cr x-ray source 43 c2l9uA_ not modelled 6.3 32 PDB header:membrane protein Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-3; PDBTitle: spatial structure of dimeric erbb3 transmembrane domain 44 c1bzkA_ not modelled 6.2 50 PDB header:transport protein Chain: A: PDB Molecule:protein (band 3 anion transport protein); PDBTitle: structural studies on the effects of the deletion in the2 red cell anion exchanger (band3, ae1) associated with3 south east asian ovalocytosis. 45 c1iijA_ not modelled 6.2 21 PDB header:signaling protein Chain: A: PDB Molecule:erbb-2 receptor protein-tyrosine kinase; PDBTitle: solution structure of the neu/erbb-2 membrane spanning2 segment 46 c2embA_ not modelled 6.1 36 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 473; PDBTitle: solution structure of the c2h2 type zinc finger (region 342-2 372) of human zinc finger protein 473 47 d1f6ga_ not modelled 6.1 14 Fold:Voltage-gated potassium channels Superfamily:Voltage-gated potassium channels Family:Voltage-gated potassium channels 48 d2h8pc1 not modelled 6.0 13 Fold:Voltage-gated potassium channels Superfamily:Voltage-gated potassium channels Family:Voltage-gated potassium channels 49 c3pqvD_ not modelled 5.9 9 PDB header:unknown function Chain: D: PDB Molecule:rcl1 protein; PDBTitle: cyclase homolog 50 c2k9yB_ not modelled 5.9 17 PDB header:transferase Chain: B: PDB Molecule:ephrin type-a receptor 2; PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0 51 c2k9yA_ not modelled 5.9 17 PDB header:transferase Chain: A: PDB Molecule:ephrin type-a receptor 2; PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0 52 c3nzqB_ not modelled 5.9 11 PDB header:lyase Chain: B: PDB Molecule:biosynthetic arginine decarboxylase; PDBTitle: crystal structure of biosynthetic arginine decarboxylase adc (spea)2 from escherichia coli, northeast structural genomics consortium3 target er600 53 d2cu9a1 not modelled 5.8 10 Fold:Immunoglobulin-like beta-sandwich Superfamily:ASF1-like Family:ASF1-like 54 c2xzmO_ not modelled 5.8 12 PDB header:ribosome Chain: O: PDB Molecule:rps13e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 55 c2zxeA_ not modelled 5.8 9 PDB header:hydrolase/transport protein Chain: A: PDB Molecule:na, k-atpase alpha subunit; PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state 56 d1t98a2 not modelled 5.7 14 Fold:STAT-like Superfamily:MukF C-terminal domain-like Family:MukF C-terminal domain-like 57 d1f8ea_ not modelled 5.5 12 Fold:6-bladed beta-propeller Superfamily:Sialidases Family:Sialidases (neuraminidases) 58 c3n2oA_ not modelled 5.4 11 PDB header:lyase Chain: A: PDB Molecule:biosynthetic arginine decarboxylase; PDBTitle: x-ray crystal structure of arginine decarboxylase complexed with2 arginine from vibrio vulnificus 59 c1qmiC_ not modelled 5.4 23 PDB header:rna 3'-terminal phosphate cyclase Chain: C: PDB Molecule:rna 3'-terminal phosphate cyclase; PDBTitle: crystal structure of rna 3'-terminal phosphate cyclase, an2 ubiquitous enzyme with unusual topology 60 c3imkA_ not modelled 5.4 13 PDB header:metal binding protein Chain: A: PDB Molecule:putative molybdenum carrier protein; PDBTitle: crystal structure of putative molybdenum carrier protein (yp_461806.1)2 from syntrophus aciditrophicus sb at 1.45 a resolution 61 c1nmbN_ not modelled 5.4 12 PDB header:complex (hydrolase/immunoglobulin) Chain: N: PDB Molecule:n9 neuraminidase; PDBTitle: the structure of a complex between the nc10 antibody and influenza2 virus neuraminidase and comparison with the overlapping binding site3 of the nc41 antibody 62 c2rmhA_ not modelled 5.4 30 PDB header:hormone Chain: A: PDB Molecule:urocortin-3; PDBTitle: human urocortin 3 63 d1v54m_ not modelled 5.3 24 Fold:Single transmembrane helix Superfamily:Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Family:Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) 64 c2d46A_ not modelled 5.3 5 PDB header:metal transport Chain: A: PDB Molecule:calcium channel, voltage-dependent, beta 4 PDBTitle: solution structure of the human beta4a-a domain 65 c1w21D_ not modelled 5.2 3 PDB header:hydrolase Chain: D: PDB Molecule:neuraminidase; PDBTitle: structure of neuraminidase from english duck subtype n62 complexed with 30 mm sialic acid (nana, neu5ac), crystal3 soaked for 43 hours at 291 k. 66 c2cpbA_ not modelled 5.2 18 PDB header:viral protein Chain: A: PDB Molecule:m13 major coat protein; PDBTitle: solution nmr structures of the major coat protein of2 filamentous bacteriophage m13 solubilized in3 dodecylphosphocholine micelles, 25 lowest energy structures 67 c2vdaB_ not modelled 5.2 63 PDB header:protein transport Chain: B: PDB Molecule:maltoporin; PDBTitle: solution structure of the seca-signal peptide complex

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0