BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (116 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q322K5 Transcriptional activator flhD n=71 Tax=Enteroba... 235 3e-61 UniRef50_A7MEF1 Transcriptional activator flhD n=106 Tax=Enterob... 197 6e-50 UniRef50_B1YQT4 Flagellar transcriptional activator n=43 Tax=Bur... 108 6e-23 UniRef50_C5CXR7 Flagellar transcriptional activator n=1 Tax=Vari... 100 1e-20 UniRef50_Q1LMQ5 Flagellar transcriptional activator n=1 Tax=Cupr... 100 2e-20 UniRef50_Q2L1E5 Transcriptional activator flhD n=10 Tax=Burkhold... 92 5e-18 UniRef50_B9MCA3 Flagellar transcriptional activator n=7 Tax=Coma... 84 2e-15 UniRef50_Q0AI31 Transcriptional activator flhD n=27 Tax=Betaprot... 83 2e-15 UniRef50_Q0K0Z8 Flagellar transcriptional activator n=2 Tax=Cupr... 81 8e-15 UniRef50_Q46TH0 Flagellar transcriptional activator FlbB n=1 Tax... 81 9e-15 UniRef50_C1DHM2 Flagellar transcriptional activator n=2 Tax=Gamm... 80 3e-14 UniRef50_Q3SJG8 Flagellar transcriptional activator FlhD n=1 Tax... 79 5e-14 UniRef50_A6SZU5 Flagellar transcriptional activator FlhD n=8 Tax... 77 2e-13 UniRef50_A1WJ06 Flagellar transcriptional activator, FlhD subuni... 76 4e-13 UniRef50_Q39LF7 Putative uncharacterized protein n=1 Tax=Burkhol... 74 2e-12 UniRef50_A6GNZ3 Flagellar transcriptional activator, FlhD subuni... 70 2e-11 UniRef50_A1K5F8 Flagellar transcriptional activator FlhD n=3 Tax... 65 6e-10 UniRef50_B2UCK0 Flagellar transcriptional activator n=3 Tax=Rals... 53 4e-06 UniRef50_Q39M88 Putative uncharacterized protein n=5 Tax=Burkhol... 50 2e-05 UniRef50_Q2SYT8 Flagellar transcriptional activator FlhD n=12 Ta... 48 1e-04 UniRef50_UPI00016A517C transcriptional activator FlhD n=1 Tax=Bu... 44 0.002 >UniRef50_Q322K5 Transcriptional activator flhD n=71 Tax=Enterobacteriaceae RepID=FLHD_SHIBS Length = 119 Score = 235 bits (600), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 115/116 (99%), Positives = 116/116 (100%) Query: 1 MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAET 60 MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAET Sbjct: 4 MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAET 63 Query: 61 NQLVCHFRFDSHQTITQLTQDSRVDDLQQIHTGIMLSTRLLNDVNQPEEALRKKRA 116 NQLVCHFRFDSHQTITQLTQDSRV+DLQQIHTGIMLSTRLLNDVNQPEEALRKKRA Sbjct: 64 NQLVCHFRFDSHQTITQLTQDSRVNDLQQIHTGIMLSTRLLNDVNQPEEALRKKRA 119 >UniRef50_A7MEF1 Transcriptional activator flhD n=106 Tax=Enterobacteriaceae RepID=FLHD_ENTS8 Length = 119 Score = 197 bits (502), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 96/116 (82%), Positives = 105/116 (90%) Query: 1 MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAET 60 MHTSELLKHIYDINLSYLLLAQRLI QDKASAMFRLGI+EEMA+TL LTLPQMVKLAET Sbjct: 4 MHTSELLKHIYDINLSYLLLAQRLISQDKASAMFRLGISEEMASTLGDLTLPQMVKLAET 63 Query: 61 NQLVCHFRFDSHQTITQLTQDSRVDDLQQIHTGIMLSTRLLNDVNQPEEALRKKRA 116 NQLVC FRF HQ+IT+LTQ+SRVDDLQQIHTGI+LSTRLLN+ + E+ RKKRA Sbjct: 64 NQLVCQFRFQDHQSITRLTQESRVDDLQQIHTGILLSTRLLNEASGTEDVARKKRA 119 >UniRef50_B1YQT4 Flagellar transcriptional activator n=43 Tax=Burkholderia RepID=B1YQT4_BURA4 Length = 106 Score = 108 bits (270), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 52/110 (47%), Positives = 74/110 (67%), Gaps = 7/110 (6%) Query: 3 TSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAETNQ 62 TSE+L I ++NLSYLLLAQRL+ +DKA MFR+G+++E+A LA LTL Q VKLA +NQ Sbjct: 4 TSEMLSEIKEVNLSYLLLAQRLLREDKAMGMFRMGVSQELADVLANLTLAQTVKLAASNQ 63 Query: 63 LVCHFRFDSHQTITQLTQDSRVDDLQQIHTGIMLSTRLLNDVNQPEEALR 112 ++C FRFD H ++ L R D + H+ I+++ QP E++R Sbjct: 64 ILCRFRFDDHALLSSLADKGRSDVVTHAHSAILMA-------GQPVESVR 106 >UniRef50_C5CXR7 Flagellar transcriptional activator n=1 Tax=Variovorax paradoxus S110 RepID=C5CXR7_VARPS Length = 118 Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 45/98 (45%), Positives = 69/98 (70%) Query: 4 SELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAETNQL 63 E+ + I DINL+Y+LLAQ+L+ QD+ +AMFRLG++ E+A LA ++L Q+VKLA +N L Sbjct: 12 GEISREIGDINLAYMLLAQKLVKQDRVAAMFRLGVSSELADMLAGMSLAQIVKLAASNFL 71 Query: 64 VCHFRFDSHQTITQLTQDSRVDDLQQIHTGIMLSTRLL 101 +C FR D H +++ + + + LQQ H I++S R L Sbjct: 72 LCSFRLDEHASMSAVVGEGKDTMLQQAHMSILMSARSL 109 >UniRef50_Q1LMQ5 Flagellar transcriptional activator n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LMQ5_RALME Length = 105 Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 49/96 (51%), Positives = 65/96 (67%) Query: 10 IYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAETNQLVCHFRF 69 I D NLSYLLLAQR+I+ A AMFRLG+++E+A + L+ Q+VKLA TN L+C FRF Sbjct: 10 ISDFNLSYLLLAQRMILSHDAEAMFRLGVSQEVAEIIGGLSAAQLVKLARTNILLCAFRF 69 Query: 70 DSHQTITQLTQDSRVDDLQQIHTGIMLSTRLLNDVN 105 D+H + L S DLQQ+H I+LS L+ +N Sbjct: 70 DNHSLLATLANGSPQHDLQQMHMAILLSAHPLDSIN 105 >UniRef50_Q2L1E5 Transcriptional activator flhD n=10 Tax=Burkholderiales RepID=FLHD_BORA1 Length = 107 Score = 92.0 bits (227), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 46/101 (45%), Positives = 69/101 (68%) Query: 4 SELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAETNQL 63 S LL I ++NLSYLLLAQR++ QD A++MFRLG + E+A L L+ Q+VKLA ++ + Sbjct: 6 SSLLADIREVNLSYLLLAQRMLRQDHAASMFRLGFSTEVADILMRLSPAQLVKLASSSSV 65 Query: 64 VCHFRFDSHQTITQLTQDSRVDDLQQIHTGIMLSTRLLNDV 104 +C FRFD + ++ LTQD LQQ H I+L+ + + ++ Sbjct: 66 LCRFRFDDYGLLSALTQDVLGGALQQAHATILLAKQPVEEI 106 >UniRef50_B9MCA3 Flagellar transcriptional activator n=7 Tax=Comamonadaceae RepID=B9MCA3_DIAST Length = 109 Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 45/105 (42%), Positives = 66/105 (62%), Gaps = 5/105 (4%) Query: 1 MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAET 60 M + +LL I + NL+YL+LAQ LI QDKA A+FRLG+NEE A LA+L+ Q++KLA Sbjct: 1 MTSEQLLAEIREANLTYLMLAQTLIRQDKAEAVFRLGLNEEAADILASLSAAQVLKLASR 60 Query: 61 NQLVCHFRFDSHQTITQLT-----QDSRVDDLQQIHTGIMLSTRL 100 N L+C FR D T LT + + + +H I++++R+ Sbjct: 61 NTLLCSFRVDDELVWTLLTSHNTPRKAASEATNTLHANILMASRV 105 >UniRef50_Q0AI31 Transcriptional activator flhD n=27 Tax=Betaproteobacteria RepID=FLHD_NITEC Length = 105 Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 44/111 (39%), Positives = 69/111 (62%), Gaps = 7/111 (6%) Query: 1 MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAET 60 M T+++L I ++NLSYLLLAQ+++ +D+ +AM+RLGI+E++A L LT Q++K+A + Sbjct: 1 MGTNQILDEIREVNLSYLLLAQQMLREDRVAAMYRLGIDEDIADILIKLTNSQLLKMAGS 60 Query: 61 NQLVCHFRFDSHQTITQLTQDSRVDDLQQIHTGIMLSTRLLNDVNQPEEAL 111 N L+C FRFD LT + L Q H I+++ QP E + Sbjct: 61 NMLLCRFRFDDSLIAEILTSHKQDRALTQSHAAILMA-------GQPAEKI 104 >UniRef50_Q0K0Z8 Flagellar transcriptional activator n=2 Tax=Cupriavidus RepID=Q0K0Z8_RALEH Length = 127 Score = 81.3 bits (199), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 40/95 (42%), Positives = 59/95 (62%) Query: 4 SELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAETNQL 63 E L+ I D+NLSYLLL QRL+ +++ A+FRLGI ++ LAALT QMV LA +N + Sbjct: 30 GESLREITDLNLSYLLLVQRLMRENEPEALFRLGIERKVGRVLAALTPQQMVALARSNLV 89 Query: 64 VCHFRFDSHQTITQLTQDSRVDDLQQIHTGIMLST 98 +C FR + + LT + LQ +H I+++ Sbjct: 90 LCRFRLEDSMLVAALTGAEPLHALQNMHAAIVMAA 124 >UniRef50_Q46TH0 Flagellar transcriptional activator FlbB n=1 Tax=Ralstonia eutropha JMP134 RepID=Q46TH0_RALEJ Length = 105 Score = 81.3 bits (199), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 40/103 (38%), Positives = 67/103 (65%) Query: 1 MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAET 60 M +++L++ I D+NL+YLLL QRL+ Q++A A+FRLGI +E+ L AL+ QM+ LA + Sbjct: 1 MDSNDLVREIKDVNLAYLLLVQRLMRQNEAEALFRLGIGKEVGHALRALSPAQMLALARS 60 Query: 61 NQLVCHFRFDSHQTITQLTQDSRVDDLQQIHTGIMLSTRLLND 103 + ++C FR D+ + L +L +HT I+L+ + L + Sbjct: 61 SMVLCRFRLDNGALLEALAGIRPQHELCNMHTAIVLAAQALEE 103 >UniRef50_C1DHM2 Flagellar transcriptional activator n=2 Tax=Gammaproteobacteria RepID=C1DHM2_AZOVD Length = 111 Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 38/96 (39%), Positives = 64/96 (66%) Query: 1 MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAET 60 M L++ I D+NL+YLLL QRL+ +D+A+A+FRL +++EMA LA L+ Q+ +LA Sbjct: 1 MVVDTLIEEIQDLNLTYLLLVQRLLRKDRATAIFRLKLSDEMADLLAGLSSKQLAQLARI 60 Query: 61 NQLVCHFRFDSHQTITQLTQDSRVDDLQQIHTGIML 96 NQL+C F+ +T++ +SR L ++H +++ Sbjct: 61 NQLICRPGFEDAGQLTKVLNNSREPGLARLHASLLM 96 >UniRef50_Q3SJG8 Flagellar transcriptional activator FlhD n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SJG8_THIDA Length = 104 Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 40/97 (41%), Positives = 62/97 (63%) Query: 1 MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAET 60 M E+L + D+NL+YL+LAQ +I DKA+A+FRLGI++++A + LT Q++KLA + Sbjct: 1 MKMDEMLDEMRDVNLNYLMLAQNMIQHDKATAVFRLGISQDVADLIENLTPAQILKLASS 60 Query: 61 NQLVCHFRFDSHQTITQLTQDSRVDDLQQIHTGIMLS 97 LV FRFD + LT ++ L Q H I+++ Sbjct: 61 GMLVSRFRFDDGMVLNLLTNYTKDRALAQSHAAILMA 97 >UniRef50_A6SZU5 Flagellar transcriptional activator FlhD n=8 Tax=Betaproteobacteria RepID=A6SZU5_JANMA Length = 105 Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 37/99 (37%), Positives = 61/99 (61%) Query: 1 MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAET 60 M T++++ I D NL YL+LAQ++I DKA+A+FRLGI+ E+A + + Q++KLA Sbjct: 1 MTTNDIIAEIRDANLGYLMLAQQMIRSDKATAIFRLGISNEIADLIEGMNNAQILKLAGA 60 Query: 61 NQLVCHFRFDSHQTITQLTQDSRVDDLQQIHTGIMLSTR 99 N ++ FRFD + LT ++ L H I+++ + Sbjct: 61 NMMLARFRFDDGAILGMLTNYNKDRSLAHSHAAILMAGQ 99 >UniRef50_A1WJ06 Flagellar transcriptional activator, FlhD subunit n=8 Tax=Burkholderiales RepID=A1WJ06_VEREI Length = 116 Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 44/108 (40%), Positives = 65/108 (60%), Gaps = 12/108 (11%) Query: 5 ELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAETNQLV 64 +LL I + NL+YL+LAQ LI QDKA A+FRLG+NEE A LAAL+ Q++KLA + L+ Sbjct: 5 QLLAEIREANLTYLMLAQTLIRQDKAEAVFRLGMNEESADILAALSAAQVMKLASRSTLL 64 Query: 65 CHFRFDSHQTITQLTQDS----------RVDD--LQQIHTGIMLSTRL 100 C R D + LT + +V + +H GI++++R+ Sbjct: 65 CRLRVDDNLVWGLLTNHATSHAPDHAAKKVGNEATNALHAGILMASRV 112 >UniRef50_Q39LF7 Putative uncharacterized protein n=1 Tax=Burkholderia sp. 383 RepID=Q39LF7_BURS3 Length = 98 Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 39/94 (41%), Positives = 61/94 (64%) Query: 10 IYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAETNQLVCHFRF 69 ++++N+SYL LAQRL+ D+AS MFRLG+ ++A LAAL++ QM LA QL+C R Sbjct: 1 MWELNMSYLWLAQRLLQSDRASGMFRLGVTADVAAALAALSMKQMNDLASAGQLICALRP 60 Query: 70 DSHQTITQLTQDSRVDDLQQIHTGIMLSTRLLND 103 + ++ LT+ + DL ++HT + L+ L D Sbjct: 61 SRYGVLSALTRATPPVDLVRVHTAMALAGLALPD 94 >UniRef50_A6GNZ3 Flagellar transcriptional activator, FlhD subunit n=1 Tax=Limnobacter sp. MED105 RepID=A6GNZ3_9BURK Length = 108 Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 37/99 (37%), Positives = 58/99 (58%) Query: 1 MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAET 60 M +ELL+ I + NLSYLLLA++LI +DKA A+ RLGI+E A L LT Q++++A Sbjct: 4 MKANELLEQIREANLSYLLLAKQLINEDKAEAIIRLGIDENTADLLDQLTTAQVLRIAAN 63 Query: 61 NQLVCHFRFDSHQTITQLTQDSRVDDLQQIHTGIMLSTR 99 + +C RF+ L + + +H I+++ R Sbjct: 64 DVPMCSIRFEDPAVWKLLCDHGKERAISGMHAAILMAGR 102 >UniRef50_A1K5F8 Flagellar transcriptional activator FlhD n=3 Tax=Betaproteobacteria RepID=A1K5F8_AZOSB Length = 107 Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 58/99 (58%) Query: 1 MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAET 60 M + I ++NL+YL+LAQ+++ D+ +AMFRLG+++++A + L+ ++V++A + Sbjct: 1 MKRPDFQAEIRELNLAYLMLAQQMLRSDRETAMFRLGVSKDVAELIEGLSAAKLVRMANS 60 Query: 61 NQLVCHFRFDSHQTITQLTQDSRVDDLQQIHTGIMLSTR 99 L+ FRFD Q + + R +H I+ + + Sbjct: 61 QMLMPSFRFDDAQLARLMAGEGRDPATSSLHAAIIAAGK 99 >UniRef50_B2UCK0 Flagellar transcriptional activator n=3 Tax=Ralstonia RepID=B2UCK0_RALPJ Length = 114 Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 40/70 (57%) Query: 1 MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAET 60 M + LL I +N++YL LA+RL+ D+A A LGI++ M L L V++A+T Sbjct: 15 MEATSLLSEIRSLNIAYLRLARRLLATDQALATTALGISQSMGEALLTLDEEACVRMAQT 74 Query: 61 NQLVCHFRFD 70 N +C FD Sbjct: 75 NLFLCRIHFD 84 >UniRef50_Q39M88 Putative uncharacterized protein n=5 Tax=Burkholderia RepID=Q39M88_BURS3 Length = 77 Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 41/67 (61%) Query: 4 SELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAETNQL 63 ++ I + N +YL+LAQR++ D +LGI++++A ++ ALT Q+ +A + +L Sbjct: 5 GDIFDAIAEFNRAYLVLAQRMLRGDYEQGKRQLGISDDIAASIVALTPDQIDAIAASGEL 64 Query: 64 VCHFRFD 70 C FR + Sbjct: 65 FCEFRIE 71 >UniRef50_Q2SYT8 Flagellar transcriptional activator FlhD n=12 Tax=pseudomallei group RepID=Q2SYT8_BURTA Length = 117 Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 37/65 (56%) Query: 7 LKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAETNQLVCH 66 + I + N YL L +RL+ +D A LGI+ E+A L +T Q+ +LA+ +LVC Sbjct: 48 FEEIAEFNQRYLQLVRRLLCEDADRARAILGISNELAIRLVTMTPAQLERLADNGELVCR 107 Query: 67 FRFDS 71 R D+ Sbjct: 108 LRADA 112 >UniRef50_UPI00016A517C transcriptional activator FlhD n=1 Tax=Burkholderia ubonensis Bu RepID=UPI00016A517C Length = 126 Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 29/53 (54%) Query: 2 HTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQM 54 H +E DIN S L LA RL+ D+ + MFRLG++ +A L LT M Sbjct: 27 HNNETPDSTRDINPSCLTLAHRLLRDDREAGMFRLGVSAPLADLLPTLTRAWM 79 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q322K5 Transcriptional activator flhD n=71 Tax=Enteroba... 150 1e-35 UniRef50_A7MEF1 Transcriptional activator flhD n=106 Tax=Enterob... 143 2e-33 UniRef50_A6SZU5 Flagellar transcriptional activator FlhD n=8 Tax... 124 7e-28 UniRef50_Q0AI31 Transcriptional activator flhD n=27 Tax=Betaprot... 124 9e-28 UniRef50_B1YQT4 Flagellar transcriptional activator n=43 Tax=Bur... 123 2e-27 UniRef50_Q3SJG8 Flagellar transcriptional activator FlhD n=1 Tax... 123 2e-27 UniRef50_Q1LMQ5 Flagellar transcriptional activator n=1 Tax=Cupr... 122 3e-27 UniRef50_Q2L1E5 Transcriptional activator flhD n=10 Tax=Burkhold... 119 3e-26 UniRef50_A6GNZ3 Flagellar transcriptional activator, FlhD subuni... 117 1e-25 UniRef50_Q46TH0 Flagellar transcriptional activator FlbB n=1 Tax... 115 5e-25 UniRef50_C5CXR7 Flagellar transcriptional activator n=1 Tax=Vari... 111 8e-24 UniRef50_Q0K0Z8 Flagellar transcriptional activator n=2 Tax=Cupr... 109 2e-23 UniRef50_B9MCA3 Flagellar transcriptional activator n=7 Tax=Coma... 107 9e-23 UniRef50_A1K5F8 Flagellar transcriptional activator FlhD n=3 Tax... 107 1e-22 UniRef50_C1DHM2 Flagellar transcriptional activator n=2 Tax=Gamm... 106 2e-22 UniRef50_A1WJ06 Flagellar transcriptional activator, FlhD subuni... 102 3e-21 UniRef50_Q39LF7 Putative uncharacterized protein n=1 Tax=Burkhol... 97 2e-19 UniRef50_Q39M88 Putative uncharacterized protein n=5 Tax=Burkhol... 82 5e-15 UniRef50_B2UCK0 Flagellar transcriptional activator n=3 Tax=Rals... 80 3e-14 UniRef50_Q2SYT8 Flagellar transcriptional activator FlhD n=12 Ta... 75 6e-13 Sequences not found previously or not previously below threshold: UniRef50_UPI00016A517C transcriptional activator FlhD n=1 Tax=Bu... 52 6e-06 UniRef50_B1V8I1 SetD n=16 Tax=Gammaproteobacteria RepID=B1V8I1_P... 45 5e-04 UniRef50_A4JT01 Putative uncharacterized protein n=1 Tax=Burkhol... 42 0.004 >UniRef50_Q322K5 Transcriptional activator flhD n=71 Tax=Enterobacteriaceae RepID=FLHD_SHIBS Length = 119 Score = 150 bits (379), Expect = 1e-35, Method: Composition-based stats. Identities = 115/116 (99%), Positives = 116/116 (100%) Query: 1 MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAET 60 MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAET Sbjct: 4 MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAET 63 Query: 61 NQLVCHFRFDSHQTITQLTQDSRVDDLQQIHTGIMLSTRLLNDVNQPEEALRKKRA 116 NQLVCHFRFDSHQTITQLTQDSRV+DLQQIHTGIMLSTRLLNDVNQPEEALRKKRA Sbjct: 64 NQLVCHFRFDSHQTITQLTQDSRVNDLQQIHTGIMLSTRLLNDVNQPEEALRKKRA 119 >UniRef50_A7MEF1 Transcriptional activator flhD n=106 Tax=Enterobacteriaceae RepID=FLHD_ENTS8 Length = 119 Score = 143 bits (361), Expect = 2e-33, Method: Composition-based stats. Identities = 96/116 (82%), Positives = 105/116 (90%) Query: 1 MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAET 60 MHTSELLKHIYDINLSYLLLAQRLI QDKASAMFRLGI+EEMA+TL LTLPQMVKLAET Sbjct: 4 MHTSELLKHIYDINLSYLLLAQRLISQDKASAMFRLGISEEMASTLGDLTLPQMVKLAET 63 Query: 61 NQLVCHFRFDSHQTITQLTQDSRVDDLQQIHTGIMLSTRLLNDVNQPEEALRKKRA 116 NQLVC FRF HQ+IT+LTQ+SRVDDLQQIHTGI+LSTRLLN+ + E+ RKKRA Sbjct: 64 NQLVCQFRFQDHQSITRLTQESRVDDLQQIHTGILLSTRLLNEASGTEDVARKKRA 119 >UniRef50_A6SZU5 Flagellar transcriptional activator FlhD n=8 Tax=Betaproteobacteria RepID=A6SZU5_JANMA Length = 105 Score = 124 bits (312), Expect = 7e-28, Method: Composition-based stats. Identities = 37/104 (35%), Positives = 63/104 (60%) Query: 1 MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAET 60 M T++++ I D NL YL+LAQ++I DKA+A+FRLGI+ E+A + + Q++KLA Sbjct: 1 MTTNDIIAEIRDANLGYLMLAQQMIRSDKATAIFRLGISNEIADLIEGMNNAQILKLAGA 60 Query: 61 NQLVCHFRFDSHQTITQLTQDSRVDDLQQIHTGIMLSTRLLNDV 104 N ++ FRFD + LT ++ L H I+++ + + + Sbjct: 61 NMMLARFRFDDGAILGMLTNYNKDRSLAHSHAAILMAGQAVEQI 104 >UniRef50_Q0AI31 Transcriptional activator flhD n=27 Tax=Betaproteobacteria RepID=FLHD_NITEC Length = 105 Score = 124 bits (311), Expect = 9e-28, Method: Composition-based stats. Identities = 41/105 (39%), Positives = 68/105 (64%) Query: 1 MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAET 60 M T+++L I ++NLSYLLLAQ+++ +D+ +AM+RLGI+E++A L LT Q++K+A + Sbjct: 1 MGTNQILDEIREVNLSYLLLAQQMLREDRVAAMYRLGIDEDIADILIKLTNSQLLKMAGS 60 Query: 61 NQLVCHFRFDSHQTITQLTQDSRVDDLQQIHTGIMLSTRLLNDVN 105 N L+C FRFD LT + L Q H I+++ + ++ Sbjct: 61 NMLLCRFRFDDSLIAEILTSHKQDRALTQSHAAILMAGQPAEKIS 105 >UniRef50_B1YQT4 Flagellar transcriptional activator n=43 Tax=Burkholderia RepID=B1YQT4_BURA4 Length = 106 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 49/102 (48%), Positives = 71/102 (69%) Query: 3 TSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAETNQ 62 TSE+L I ++NLSYLLLAQRL+ +DKA MFR+G+++E+A LA LTL Q VKLA +NQ Sbjct: 4 TSEMLSEIKEVNLSYLLLAQRLLREDKAMGMFRMGVSQELADVLANLTLAQTVKLAASNQ 63 Query: 63 LVCHFRFDSHQTITQLTQDSRVDDLQQIHTGIMLSTRLLNDV 104 ++C FRFD H ++ L R D + H+ I+++ + + V Sbjct: 64 ILCRFRFDDHALLSSLADKGRSDVVTHAHSAILMAGQPVESV 105 >UniRef50_Q3SJG8 Flagellar transcriptional activator FlhD n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SJG8_THIDA Length = 104 Score = 123 bits (308), Expect = 2e-27, Method: Composition-based stats. Identities = 41/104 (39%), Positives = 65/104 (62%) Query: 1 MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAET 60 M E+L + D+NL+YL+LAQ +I DKA+A+FRLGI++++A + LT Q++KLA + Sbjct: 1 MKMDEMLDEMRDVNLNYLMLAQNMIQHDKATAVFRLGISQDVADLIENLTPAQILKLASS 60 Query: 61 NQLVCHFRFDSHQTITQLTQDSRVDDLQQIHTGIMLSTRLLNDV 104 LV FRFD + LT ++ L Q H I+++ + + V Sbjct: 61 GMLVSRFRFDDGMVLNLLTNYTKDRALAQSHAAILMAGQAMATV 104 >UniRef50_Q1LMQ5 Flagellar transcriptional activator n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LMQ5_RALME Length = 105 Score = 122 bits (306), Expect = 3e-27, Method: Composition-based stats. Identities = 50/105 (47%), Positives = 68/105 (64%) Query: 1 MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAET 60 M + + I D NLSYLLLAQR+I+ A AMFRLG+++E+A + L+ Q+VKLA T Sbjct: 1 MEVDDRVISISDFNLSYLLLAQRMILSHDAEAMFRLGVSQEVAEIIGGLSAAQLVKLART 60 Query: 61 NQLVCHFRFDSHQTITQLTQDSRVDDLQQIHTGIMLSTRLLNDVN 105 N L+C FRFD+H + L S DLQQ+H I+LS L+ +N Sbjct: 61 NILLCAFRFDNHSLLATLANGSPQHDLQQMHMAILLSAHPLDSIN 105 >UniRef50_Q2L1E5 Transcriptional activator flhD n=10 Tax=Burkholderiales RepID=FLHD_BORA1 Length = 107 Score = 119 bits (299), Expect = 3e-26, Method: Composition-based stats. Identities = 46/101 (45%), Positives = 69/101 (68%) Query: 4 SELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAETNQL 63 S LL I ++NLSYLLLAQR++ QD A++MFRLG + E+A L L+ Q+VKLA ++ + Sbjct: 6 SSLLADIREVNLSYLLLAQRMLRQDHAASMFRLGFSTEVADILMRLSPAQLVKLASSSSV 65 Query: 64 VCHFRFDSHQTITQLTQDSRVDDLQQIHTGIMLSTRLLNDV 104 +C FRFD + ++ LTQD LQQ H I+L+ + + ++ Sbjct: 66 LCRFRFDDYGLLSALTQDVLGGALQQAHATILLAKQPVEEI 106 >UniRef50_A6GNZ3 Flagellar transcriptional activator, FlhD subunit n=1 Tax=Limnobacter sp. MED105 RepID=A6GNZ3_9BURK Length = 108 Score = 117 bits (294), Expect = 1e-25, Method: Composition-based stats. Identities = 37/100 (37%), Positives = 58/100 (58%) Query: 1 MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAET 60 M +ELL+ I + NLSYLLLA++LI +DKA A+ RLGI+E A L LT Q++++A Sbjct: 4 MKANELLEQIREANLSYLLLAKQLINEDKAEAIIRLGIDENTADLLDQLTTAQVLRIAAN 63 Query: 61 NQLVCHFRFDSHQTITQLTQDSRVDDLQQIHTGIMLSTRL 100 + +C RF+ L + + +H I+++ R Sbjct: 64 DVPMCSIRFEDPAVWKLLCDHGKERAISGMHAAILMAGRS 103 >UniRef50_Q46TH0 Flagellar transcriptional activator FlbB n=1 Tax=Ralstonia eutropha JMP134 RepID=Q46TH0_RALEJ Length = 105 Score = 115 bits (287), Expect = 5e-25, Method: Composition-based stats. Identities = 40/103 (38%), Positives = 67/103 (65%) Query: 1 MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAET 60 M +++L++ I D+NL+YLLL QRL+ Q++A A+FRLGI +E+ L AL+ QM+ LA + Sbjct: 1 MDSNDLVREIKDVNLAYLLLVQRLMRQNEAEALFRLGIGKEVGHALRALSPAQMLALARS 60 Query: 61 NQLVCHFRFDSHQTITQLTQDSRVDDLQQIHTGIMLSTRLLND 103 + ++C FR D+ + L +L +HT I+L+ + L + Sbjct: 61 SMVLCRFRLDNGALLEALAGIRPQHELCNMHTAIVLAAQALEE 103 >UniRef50_C5CXR7 Flagellar transcriptional activator n=1 Tax=Variovorax paradoxus S110 RepID=C5CXR7_VARPS Length = 118 Score = 111 bits (277), Expect = 8e-24, Method: Composition-based stats. Identities = 45/99 (45%), Positives = 69/99 (69%) Query: 4 SELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAETNQL 63 E+ + I DINL+Y+LLAQ+L+ QD+ +AMFRLG++ E+A LA ++L Q+VKLA +N L Sbjct: 12 GEISREIGDINLAYMLLAQKLVKQDRVAAMFRLGVSSELADMLAGMSLAQIVKLAASNFL 71 Query: 64 VCHFRFDSHQTITQLTQDSRVDDLQQIHTGIMLSTRLLN 102 +C FR D H +++ + + + LQQ H I++S R L Sbjct: 72 LCSFRLDEHASMSAVVGEGKDTMLQQAHMSILMSARSLQ 110 >UniRef50_Q0K0Z8 Flagellar transcriptional activator n=2 Tax=Cupriavidus RepID=Q0K0Z8_RALEH Length = 127 Score = 109 bits (273), Expect = 2e-23, Method: Composition-based stats. Identities = 40/97 (41%), Positives = 60/97 (61%) Query: 3 TSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAETNQ 62 E L+ I D+NLSYLLL QRL+ +++ A+FRLGI ++ LAALT QMV LA +N Sbjct: 29 VGESLREITDLNLSYLLLVQRLMRENEPEALFRLGIERKVGRVLAALTPQQMVALARSNL 88 Query: 63 LVCHFRFDSHQTITQLTQDSRVDDLQQIHTGIMLSTR 99 ++C FR + + LT + LQ +H I+++ + Sbjct: 89 VLCRFRLEDSMLVAALTGAEPLHALQNMHAAIVMAAQ 125 >UniRef50_B9MCA3 Flagellar transcriptional activator n=7 Tax=Comamonadaceae RepID=B9MCA3_DIAST Length = 109 Score = 107 bits (268), Expect = 9e-23, Method: Composition-based stats. Identities = 45/107 (42%), Positives = 64/107 (59%), Gaps = 5/107 (4%) Query: 1 MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAET 60 M + +LL I + NL+YL+LAQ LI QDKA A+FRLG+NEE A LA+L+ Q++KLA Sbjct: 1 MTSEQLLAEIREANLTYLMLAQTLIRQDKAEAVFRLGLNEEAADILASLSAAQVLKLASR 60 Query: 61 NQLVCHFRFDSHQTITQLTQDSRVD-----DLQQIHTGIMLSTRLLN 102 N L+C FR D T LT + +H I++++R+ Sbjct: 61 NTLLCSFRVDDELVWTLLTSHNTPRKAASEATNTLHANILMASRVSE 107 >UniRef50_A1K5F8 Flagellar transcriptional activator FlhD n=3 Tax=Betaproteobacteria RepID=A1K5F8_AZOSB Length = 107 Score = 107 bits (267), Expect = 1e-22, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 60/106 (56%) Query: 1 MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAET 60 M + I ++NL+YL+LAQ+++ D+ +AMFRLG+++++A + L+ ++V++A + Sbjct: 1 MKRPDFQAEIRELNLAYLMLAQQMLRSDRETAMFRLGVSKDVAELIEGLSAAKLVRMANS 60 Query: 61 NQLVCHFRFDSHQTITQLTQDSRVDDLQQIHTGIMLSTRLLNDVNQ 106 L+ FRFD Q + + R +H I+ + + + Q Sbjct: 61 QMLMPSFRFDDAQLARLMAGEGRDPATSSLHAAIIAAGKAVQASAQ 106 >UniRef50_C1DHM2 Flagellar transcriptional activator n=2 Tax=Gammaproteobacteria RepID=C1DHM2_AZOVD Length = 111 Score = 106 bits (265), Expect = 2e-22, Method: Composition-based stats. Identities = 38/98 (38%), Positives = 65/98 (66%) Query: 1 MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAET 60 M L++ I D+NL+YLLL QRL+ +D+A+A+FRL +++EMA LA L+ Q+ +LA Sbjct: 1 MVVDTLIEEIQDLNLTYLLLVQRLLRKDRATAIFRLKLSDEMADLLAGLSSKQLAQLARI 60 Query: 61 NQLVCHFRFDSHQTITQLTQDSRVDDLQQIHTGIMLST 98 NQL+C F+ +T++ +SR L ++H +++ + Sbjct: 61 NQLICRPGFEDAGQLTKVLNNSREPGLARLHASLLMVS 98 >UniRef50_A1WJ06 Flagellar transcriptional activator, FlhD subunit n=8 Tax=Burkholderiales RepID=A1WJ06_VEREI Length = 116 Score = 102 bits (255), Expect = 3e-21, Method: Composition-based stats. Identities = 44/114 (38%), Positives = 63/114 (55%), Gaps = 12/114 (10%) Query: 1 MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAET 60 M +LL I + NL+YL+LAQ LI QDKA A+FRLG+NEE A LAAL+ Q++KLA Sbjct: 1 MLQEQLLAEIREANLTYLMLAQTLIRQDKAEAVFRLGMNEESADILAALSAAQVMKLASR 60 Query: 61 NQLVCHFRFDSHQTITQLTQDSRVD------------DLQQIHTGIMLSTRLLN 102 + L+C R D + LT + +H GI++++R+ Sbjct: 61 STLLCRLRVDDNLVWGLLTNHATSHAPDHAAKKVGNEATNALHAGILMASRVSE 114 >UniRef50_Q39LF7 Putative uncharacterized protein n=1 Tax=Burkholderia sp. 383 RepID=Q39LF7_BURS3 Length = 98 Score = 96.6 bits (239), Expect = 2e-19, Method: Composition-based stats. Identities = 39/94 (41%), Positives = 61/94 (64%) Query: 10 IYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAETNQLVCHFRF 69 ++++N+SYL LAQRL+ D+AS MFRLG+ ++A LAAL++ QM LA QL+C R Sbjct: 1 MWELNMSYLWLAQRLLQSDRASGMFRLGVTADVAAALAALSMKQMNDLASAGQLICALRP 60 Query: 70 DSHQTITQLTQDSRVDDLQQIHTGIMLSTRLLND 103 + ++ LT+ + DL ++HT + L+ L D Sbjct: 61 SRYGVLSALTRATPPVDLVRVHTAMALAGLALPD 94 >UniRef50_Q39M88 Putative uncharacterized protein n=5 Tax=Burkholderia RepID=Q39M88_BURS3 Length = 77 Score = 82.4 bits (202), Expect = 5e-15, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 41/67 (61%) Query: 4 SELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAETNQL 63 ++ I + N +YL+LAQR++ D +LGI++++A ++ ALT Q+ +A + +L Sbjct: 5 GDIFDAIAEFNRAYLVLAQRMLRGDYEQGKRQLGISDDIAASIVALTPDQIDAIAASGEL 64 Query: 64 VCHFRFD 70 C FR + Sbjct: 65 FCEFRIE 71 >UniRef50_B2UCK0 Flagellar transcriptional activator n=3 Tax=Ralstonia RepID=B2UCK0_RALPJ Length = 114 Score = 79.7 bits (195), Expect = 3e-14, Method: Composition-based stats. Identities = 28/80 (35%), Positives = 41/80 (51%) Query: 1 MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAET 60 M + LL I +N++YL LA+RL+ D+A A LGI++ M L L V++A+T Sbjct: 15 MEATSLLSEIRSLNIAYLRLARRLLATDQALATTALGISQSMGEALLTLDEEACVRMAQT 74 Query: 61 NQLVCHFRFDSHQTITQLTQ 80 N +C FD L Sbjct: 75 NLFLCRIHFDDRVLAALLAG 94 >UniRef50_Q2SYT8 Flagellar transcriptional activator FlhD n=12 Tax=pseudomallei group RepID=Q2SYT8_BURTA Length = 117 Score = 75.1 bits (183), Expect = 6e-13, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 37/66 (56%) Query: 5 ELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAETNQLV 64 + + I + N YL L +RL+ +D A LGI+ E+A L +T Q+ +LA+ +LV Sbjct: 46 DAFEEIAEFNQRYLQLVRRLLCEDADRARAILGISNELAIRLVTMTPAQLERLADNGELV 105 Query: 65 CHFRFD 70 C R D Sbjct: 106 CRLRAD 111 >UniRef50_UPI00016A517C transcriptional activator FlhD n=1 Tax=Burkholderia ubonensis Bu RepID=UPI00016A517C Length = 126 Score = 52.0 bits (123), Expect = 6e-06, Method: Composition-based stats. Identities = 22/53 (41%), Positives = 29/53 (54%) Query: 2 HTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQM 54 H +E DIN S L LA RL+ D+ + MFRLG++ +A L LT M Sbjct: 27 HNNETPDSTRDINPSCLTLAHRLLRDDREAGMFRLGVSAPLADLLPTLTRAWM 79 >UniRef50_B1V8I1 SetD n=16 Tax=Gammaproteobacteria RepID=B1V8I1_PASPI Length = 99 Score = 45.4 bits (106), Expect = 5e-04, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 2/82 (2%) Query: 1 MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAET 60 M T++ + Y +NL+YL A+ L D A+ R G+ ++ L + + ++A + Sbjct: 1 MTTNQ--QDFYQLNLAYLHAARELARIDPQEAVLRFGLTRDVVDALINAGVDDLQRVATS 58 Query: 61 NQLVCHFRFDSHQTITQLTQDS 82 + ++ R + Q I + Sbjct: 59 SFMLFQPRGNQSQLIEMVKSKG 80 >UniRef50_A4JT01 Putative uncharacterized protein n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JT01_BURVG Length = 74 Score = 42.3 bits (98), Expect = 0.004, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 32/60 (53%) Query: 1 MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAET 60 M ++ + + ++ +YL L Q+++ D A LGI+ E+A+ + AL ++ L E Sbjct: 2 MEQGDICRALEALDPAYLELMQQMLKIDCDVAARELGISNEIASLIIALKPAELEALVER 61 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q322K5 Transcriptional activator flhD n=71 Tax=Enteroba... 145 3e-34 UniRef50_A7MEF1 Transcriptional activator flhD n=106 Tax=Enterob... 141 7e-33 UniRef50_Q0AI31 Transcriptional activator flhD n=27 Tax=Betaprot... 127 2e-28 UniRef50_A6SZU5 Flagellar transcriptional activator FlhD n=8 Tax... 124 7e-28 UniRef50_B1YQT4 Flagellar transcriptional activator n=43 Tax=Bur... 122 3e-27 UniRef50_Q1LMQ5 Flagellar transcriptional activator n=1 Tax=Cupr... 122 5e-27 UniRef50_Q3SJG8 Flagellar transcriptional activator FlhD n=1 Tax... 120 1e-26 UniRef50_Q2L1E5 Transcriptional activator flhD n=10 Tax=Burkhold... 118 7e-26 UniRef50_A6GNZ3 Flagellar transcriptional activator, FlhD subuni... 115 4e-25 UniRef50_Q46TH0 Flagellar transcriptional activator FlbB n=1 Tax... 114 8e-25 UniRef50_C5CXR7 Flagellar transcriptional activator n=1 Tax=Vari... 110 1e-23 UniRef50_Q0K0Z8 Flagellar transcriptional activator n=2 Tax=Cupr... 108 6e-23 UniRef50_A1K5F8 Flagellar transcriptional activator FlhD n=3 Tax... 107 2e-22 UniRef50_B9MCA3 Flagellar transcriptional activator n=7 Tax=Coma... 106 2e-22 UniRef50_C1DHM2 Flagellar transcriptional activator n=2 Tax=Gamm... 103 2e-21 UniRef50_A1WJ06 Flagellar transcriptional activator, FlhD subuni... 101 8e-21 UniRef50_Q39LF7 Putative uncharacterized protein n=1 Tax=Burkhol... 92 5e-18 UniRef50_B1V8I1 SetD n=16 Tax=Gammaproteobacteria RepID=B1V8I1_P... 79 3e-14 UniRef50_Q39M88 Putative uncharacterized protein n=5 Tax=Burkhol... 79 4e-14 UniRef50_B2UCK0 Flagellar transcriptional activator n=3 Tax=Rals... 79 5e-14 UniRef50_Q2SYT8 Flagellar transcriptional activator FlhD n=12 Ta... 73 2e-12 UniRef50_UPI00016A517C transcriptional activator FlhD n=1 Tax=Bu... 69 5e-11 Sequences not found previously or not previously below threshold: UniRef50_A4JT01 Putative uncharacterized protein n=1 Tax=Burkhol... 43 0.002 UniRef50_C2IBQ0 ABC-type polar amino acid transport system ATPas... 40 0.022 CONVERGED! >UniRef50_Q322K5 Transcriptional activator flhD n=71 Tax=Enterobacteriaceae RepID=FLHD_SHIBS Length = 119 Score = 145 bits (367), Expect = 3e-34, Method: Composition-based stats. Identities = 115/116 (99%), Positives = 116/116 (100%) Query: 1 MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAET 60 MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAET Sbjct: 4 MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAET 63 Query: 61 NQLVCHFRFDSHQTITQLTQDSRVDDLQQIHTGIMLSTRLLNDVNQPEEALRKKRA 116 NQLVCHFRFDSHQTITQLTQDSRV+DLQQIHTGIMLSTRLLNDVNQPEEALRKKRA Sbjct: 64 NQLVCHFRFDSHQTITQLTQDSRVNDLQQIHTGIMLSTRLLNDVNQPEEALRKKRA 119 >UniRef50_A7MEF1 Transcriptional activator flhD n=106 Tax=Enterobacteriaceae RepID=FLHD_ENTS8 Length = 119 Score = 141 bits (355), Expect = 7e-33, Method: Composition-based stats. Identities = 96/116 (82%), Positives = 105/116 (90%) Query: 1 MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAET 60 MHTSELLKHIYDINLSYLLLAQRLI QDKASAMFRLGI+EEMA+TL LTLPQMVKLAET Sbjct: 4 MHTSELLKHIYDINLSYLLLAQRLISQDKASAMFRLGISEEMASTLGDLTLPQMVKLAET 63 Query: 61 NQLVCHFRFDSHQTITQLTQDSRVDDLQQIHTGIMLSTRLLNDVNQPEEALRKKRA 116 NQLVC FRF HQ+IT+LTQ+SRVDDLQQIHTGI+LSTRLLN+ + E+ RKKRA Sbjct: 64 NQLVCQFRFQDHQSITRLTQESRVDDLQQIHTGILLSTRLLNEASGTEDVARKKRA 119 >UniRef50_Q0AI31 Transcriptional activator flhD n=27 Tax=Betaproteobacteria RepID=FLHD_NITEC Length = 105 Score = 127 bits (318), Expect = 2e-28, Method: Composition-based stats. Identities = 41/105 (39%), Positives = 68/105 (64%) Query: 1 MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAET 60 M T+++L I ++NLSYLLLAQ+++ +D+ +AM+RLGI+E++A L LT Q++K+A + Sbjct: 1 MGTNQILDEIREVNLSYLLLAQQMLREDRVAAMYRLGIDEDIADILIKLTNSQLLKMAGS 60 Query: 61 NQLVCHFRFDSHQTITQLTQDSRVDDLQQIHTGIMLSTRLLNDVN 105 N L+C FRFD LT + L Q H I+++ + ++ Sbjct: 61 NMLLCRFRFDDSLIAEILTSHKQDRALTQSHAAILMAGQPAEKIS 105 >UniRef50_A6SZU5 Flagellar transcriptional activator FlhD n=8 Tax=Betaproteobacteria RepID=A6SZU5_JANMA Length = 105 Score = 124 bits (312), Expect = 7e-28, Method: Composition-based stats. Identities = 37/105 (35%), Positives = 63/105 (60%) Query: 1 MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAET 60 M T++++ I D NL YL+LAQ++I DKA+A+FRLGI+ E+A + + Q++KLA Sbjct: 1 MTTNDIIAEIRDANLGYLMLAQQMIRSDKATAIFRLGISNEIADLIEGMNNAQILKLAGA 60 Query: 61 NQLVCHFRFDSHQTITQLTQDSRVDDLQQIHTGIMLSTRLLNDVN 105 N ++ FRFD + LT ++ L H I+++ + + + Sbjct: 61 NMMLARFRFDDGAILGMLTNYNKDRSLAHSHAAILMAGQAVEQIA 105 >UniRef50_B1YQT4 Flagellar transcriptional activator n=43 Tax=Burkholderia RepID=B1YQT4_BURA4 Length = 106 Score = 122 bits (307), Expect = 3e-27, Method: Composition-based stats. Identities = 49/102 (48%), Positives = 71/102 (69%) Query: 3 TSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAETNQ 62 TSE+L I ++NLSYLLLAQRL+ +DKA MFR+G+++E+A LA LTL Q VKLA +NQ Sbjct: 4 TSEMLSEIKEVNLSYLLLAQRLLREDKAMGMFRMGVSQELADVLANLTLAQTVKLAASNQ 63 Query: 63 LVCHFRFDSHQTITQLTQDSRVDDLQQIHTGIMLSTRLLNDV 104 ++C FRFD H ++ L R D + H+ I+++ + + V Sbjct: 64 ILCRFRFDDHALLSSLADKGRSDVVTHAHSAILMAGQPVESV 105 >UniRef50_Q1LMQ5 Flagellar transcriptional activator n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LMQ5_RALME Length = 105 Score = 122 bits (305), Expect = 5e-27, Method: Composition-based stats. Identities = 50/105 (47%), Positives = 68/105 (64%) Query: 1 MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAET 60 M + + I D NLSYLLLAQR+I+ A AMFRLG+++E+A + L+ Q+VKLA T Sbjct: 1 MEVDDRVISISDFNLSYLLLAQRMILSHDAEAMFRLGVSQEVAEIIGGLSAAQLVKLART 60 Query: 61 NQLVCHFRFDSHQTITQLTQDSRVDDLQQIHTGIMLSTRLLNDVN 105 N L+C FRFD+H + L S DLQQ+H I+LS L+ +N Sbjct: 61 NILLCAFRFDNHSLLATLANGSPQHDLQQMHMAILLSAHPLDSIN 105 >UniRef50_Q3SJG8 Flagellar transcriptional activator FlhD n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SJG8_THIDA Length = 104 Score = 120 bits (302), Expect = 1e-26, Method: Composition-based stats. Identities = 41/104 (39%), Positives = 65/104 (62%) Query: 1 MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAET 60 M E+L + D+NL+YL+LAQ +I DKA+A+FRLGI++++A + LT Q++KLA + Sbjct: 1 MKMDEMLDEMRDVNLNYLMLAQNMIQHDKATAVFRLGISQDVADLIENLTPAQILKLASS 60 Query: 61 NQLVCHFRFDSHQTITQLTQDSRVDDLQQIHTGIMLSTRLLNDV 104 LV FRFD + LT ++ L Q H I+++ + + V Sbjct: 61 GMLVSRFRFDDGMVLNLLTNYTKDRALAQSHAAILMAGQAMATV 104 >UniRef50_Q2L1E5 Transcriptional activator flhD n=10 Tax=Burkholderiales RepID=FLHD_BORA1 Length = 107 Score = 118 bits (295), Expect = 7e-26, Method: Composition-based stats. Identities = 46/104 (44%), Positives = 69/104 (66%) Query: 2 HTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAETN 61 S LL I ++NLSYLLLAQR++ QD A++MFRLG + E+A L L+ Q+VKLA ++ Sbjct: 4 TDSSLLADIREVNLSYLLLAQRMLRQDHAASMFRLGFSTEVADILMRLSPAQLVKLASSS 63 Query: 62 QLVCHFRFDSHQTITQLTQDSRVDDLQQIHTGIMLSTRLLNDVN 105 ++C FRFD + ++ LTQD LQQ H I+L+ + + ++ Sbjct: 64 SVLCRFRFDDYGLLSALTQDVLGGALQQAHATILLAKQPVEEIA 107 >UniRef50_A6GNZ3 Flagellar transcriptional activator, FlhD subunit n=1 Tax=Limnobacter sp. MED105 RepID=A6GNZ3_9BURK Length = 108 Score = 115 bits (288), Expect = 4e-25, Method: Composition-based stats. Identities = 37/102 (36%), Positives = 58/102 (56%) Query: 1 MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAET 60 M +ELL+ I + NLSYLLLA++LI +DKA A+ RLGI+E A L LT Q++++A Sbjct: 4 MKANELLEQIREANLSYLLLAKQLINEDKAEAIIRLGIDENTADLLDQLTTAQVLRIAAN 63 Query: 61 NQLVCHFRFDSHQTITQLTQDSRVDDLQQIHTGIMLSTRLLN 102 + +C RF+ L + + +H I+++ R Sbjct: 64 DVPMCSIRFEDPAVWKLLCDHGKERAISGMHAAILMAGRSAQ 105 >UniRef50_Q46TH0 Flagellar transcriptional activator FlbB n=1 Tax=Ralstonia eutropha JMP134 RepID=Q46TH0_RALEJ Length = 105 Score = 114 bits (286), Expect = 8e-25, Method: Composition-based stats. Identities = 40/103 (38%), Positives = 67/103 (65%) Query: 1 MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAET 60 M +++L++ I D+NL+YLLL QRL+ Q++A A+FRLGI +E+ L AL+ QM+ LA + Sbjct: 1 MDSNDLVREIKDVNLAYLLLVQRLMRQNEAEALFRLGIGKEVGHALRALSPAQMLALARS 60 Query: 61 NQLVCHFRFDSHQTITQLTQDSRVDDLQQIHTGIMLSTRLLND 103 + ++C FR D+ + L +L +HT I+L+ + L + Sbjct: 61 SMVLCRFRLDNGALLEALAGIRPQHELCNMHTAIVLAAQALEE 103 >UniRef50_C5CXR7 Flagellar transcriptional activator n=1 Tax=Variovorax paradoxus S110 RepID=C5CXR7_VARPS Length = 118 Score = 110 bits (275), Expect = 1e-23, Method: Composition-based stats. Identities = 45/101 (44%), Positives = 69/101 (68%) Query: 3 TSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAETNQ 62 E+ + I DINL+Y+LLAQ+L+ QD+ +AMFRLG++ E+A LA ++L Q+VKLA +N Sbjct: 11 NGEISREIGDINLAYMLLAQKLVKQDRVAAMFRLGVSSELADMLAGMSLAQIVKLAASNF 70 Query: 63 LVCHFRFDSHQTITQLTQDSRVDDLQQIHTGIMLSTRLLND 103 L+C FR D H +++ + + + LQQ H I++S R L Sbjct: 71 LLCSFRLDEHASMSAVVGEGKDTMLQQAHMSILMSARSLQT 111 >UniRef50_Q0K0Z8 Flagellar transcriptional activator n=2 Tax=Cupriavidus RepID=Q0K0Z8_RALEH Length = 127 Score = 108 bits (270), Expect = 6e-23, Method: Composition-based stats. Identities = 40/97 (41%), Positives = 60/97 (61%) Query: 3 TSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAETNQ 62 E L+ I D+NLSYLLL QRL+ +++ A+FRLGI ++ LAALT QMV LA +N Sbjct: 29 VGESLREITDLNLSYLLLVQRLMRENEPEALFRLGIERKVGRVLAALTPQQMVALARSNL 88 Query: 63 LVCHFRFDSHQTITQLTQDSRVDDLQQIHTGIMLSTR 99 ++C FR + + LT + LQ +H I+++ + Sbjct: 89 VLCRFRLEDSMLVAALTGAEPLHALQNMHAAIVMAAQ 125 >UniRef50_A1K5F8 Flagellar transcriptional activator FlhD n=3 Tax=Betaproteobacteria RepID=A1K5F8_AZOSB Length = 107 Score = 107 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 60/106 (56%) Query: 1 MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAET 60 M + I ++NL+YL+LAQ+++ D+ +AMFRLG+++++A + L+ ++V++A + Sbjct: 1 MKRPDFQAEIRELNLAYLMLAQQMLRSDRETAMFRLGVSKDVAELIEGLSAAKLVRMANS 60 Query: 61 NQLVCHFRFDSHQTITQLTQDSRVDDLQQIHTGIMLSTRLLNDVNQ 106 L+ FRFD Q + + R +H I+ + + + Q Sbjct: 61 QMLMPSFRFDDAQLARLMAGEGRDPATSSLHAAIIAAGKAVQASAQ 106 >UniRef50_B9MCA3 Flagellar transcriptional activator n=7 Tax=Comamonadaceae RepID=B9MCA3_DIAST Length = 109 Score = 106 bits (265), Expect = 2e-22, Method: Composition-based stats. Identities = 45/107 (42%), Positives = 64/107 (59%), Gaps = 5/107 (4%) Query: 1 MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAET 60 M + +LL I + NL+YL+LAQ LI QDKA A+FRLG+NEE A LA+L+ Q++KLA Sbjct: 1 MTSEQLLAEIREANLTYLMLAQTLIRQDKAEAVFRLGLNEEAADILASLSAAQVLKLASR 60 Query: 61 NQLVCHFRFDSHQTITQLTQDSRVD-----DLQQIHTGIMLSTRLLN 102 N L+C FR D T LT + +H I++++R+ Sbjct: 61 NTLLCSFRVDDELVWTLLTSHNTPRKAASEATNTLHANILMASRVSE 107 >UniRef50_C1DHM2 Flagellar transcriptional activator n=2 Tax=Gammaproteobacteria RepID=C1DHM2_AZOVD Length = 111 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 38/98 (38%), Positives = 65/98 (66%) Query: 1 MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAET 60 M L++ I D+NL+YLLL QRL+ +D+A+A+FRL +++EMA LA L+ Q+ +LA Sbjct: 1 MVVDTLIEEIQDLNLTYLLLVQRLLRKDRATAIFRLKLSDEMADLLAGLSSKQLAQLARI 60 Query: 61 NQLVCHFRFDSHQTITQLTQDSRVDDLQQIHTGIMLST 98 NQL+C F+ +T++ +SR L ++H +++ + Sbjct: 61 NQLICRPGFEDAGQLTKVLNNSREPGLARLHASLLMVS 98 >UniRef50_A1WJ06 Flagellar transcriptional activator, FlhD subunit n=8 Tax=Burkholderiales RepID=A1WJ06_VEREI Length = 116 Score = 101 bits (251), Expect = 8e-21, Method: Composition-based stats. Identities = 44/114 (38%), Positives = 63/114 (55%), Gaps = 12/114 (10%) Query: 1 MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAET 60 M +LL I + NL+YL+LAQ LI QDKA A+FRLG+NEE A LAAL+ Q++KLA Sbjct: 1 MLQEQLLAEIREANLTYLMLAQTLIRQDKAEAVFRLGMNEESADILAALSAAQVMKLASR 60 Query: 61 NQLVCHFRFDSHQTITQLTQDSRVD------------DLQQIHTGIMLSTRLLN 102 + L+C R D + LT + +H GI++++R+ Sbjct: 61 STLLCRLRVDDNLVWGLLTNHATSHAPDHAAKKVGNEATNALHAGILMASRVSE 114 >UniRef50_Q39LF7 Putative uncharacterized protein n=1 Tax=Burkholderia sp. 383 RepID=Q39LF7_BURS3 Length = 98 Score = 92.0 bits (227), Expect = 5e-18, Method: Composition-based stats. Identities = 39/94 (41%), Positives = 61/94 (64%) Query: 10 IYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAETNQLVCHFRF 69 ++++N+SYL LAQRL+ D+AS MFRLG+ ++A LAAL++ QM LA QL+C R Sbjct: 1 MWELNMSYLWLAQRLLQSDRASGMFRLGVTADVAAALAALSMKQMNDLASAGQLICALRP 60 Query: 70 DSHQTITQLTQDSRVDDLQQIHTGIMLSTRLLND 103 + ++ LT+ + DL ++HT + L+ L D Sbjct: 61 SRYGVLSALTRATPPVDLVRVHTAMALAGLALPD 94 >UniRef50_B1V8I1 SetD n=16 Tax=Gammaproteobacteria RepID=B1V8I1_PASPI Length = 99 Score = 79.3 bits (194), Expect = 3e-14, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 2/83 (2%) Query: 1 MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAET 60 M T++ + Y +NL+YL A+ L D A+ R G+ ++ L + + ++A + Sbjct: 1 MTTNQ--QDFYQLNLAYLHAARELARIDPQEAVLRFGLTRDVVDALINAGVDDLQRVATS 58 Query: 61 NQLVCHFRFDSHQTITQLTQDSR 83 + ++ R + Q I + Sbjct: 59 SFMLFQPRGNQSQLIEMVKSKGT 81 >UniRef50_Q39M88 Putative uncharacterized protein n=5 Tax=Burkholderia RepID=Q39M88_BURS3 Length = 77 Score = 79.3 bits (194), Expect = 4e-14, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 41/67 (61%) Query: 4 SELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAETNQL 63 ++ I + N +YL+LAQR++ D +LGI++++A ++ ALT Q+ +A + +L Sbjct: 5 GDIFDAIAEFNRAYLVLAQRMLRGDYEQGKRQLGISDDIAASIVALTPDQIDAIAASGEL 64 Query: 64 VCHFRFD 70 C FR + Sbjct: 65 FCEFRIE 71 >UniRef50_B2UCK0 Flagellar transcriptional activator n=3 Tax=Ralstonia RepID=B2UCK0_RALPJ Length = 114 Score = 78.9 bits (193), Expect = 5e-14, Method: Composition-based stats. Identities = 28/80 (35%), Positives = 41/80 (51%) Query: 1 MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAET 60 M + LL I +N++YL LA+RL+ D+A A LGI++ M L L V++A+T Sbjct: 15 MEATSLLSEIRSLNIAYLRLARRLLATDQALATTALGISQSMGEALLTLDEEACVRMAQT 74 Query: 61 NQLVCHFRFDSHQTITQLTQ 80 N +C FD L Sbjct: 75 NLFLCRIHFDDRVLAALLAG 94 >UniRef50_Q2SYT8 Flagellar transcriptional activator FlhD n=12 Tax=pseudomallei group RepID=Q2SYT8_BURTA Length = 117 Score = 73.1 bits (178), Expect = 2e-12, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 37/66 (56%) Query: 5 ELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAETNQLV 64 + + I + N YL L +RL+ +D A LGI+ E+A L +T Q+ +LA+ +LV Sbjct: 46 DAFEEIAEFNQRYLQLVRRLLCEDADRARAILGISNELAIRLVTMTPAQLERLADNGELV 105 Query: 65 CHFRFD 70 C R D Sbjct: 106 CRLRAD 111 >UniRef50_UPI00016A517C transcriptional activator FlhD n=1 Tax=Burkholderia ubonensis Bu RepID=UPI00016A517C Length = 126 Score = 68.9 bits (167), Expect = 5e-11, Method: Composition-based stats. Identities = 22/53 (41%), Positives = 29/53 (54%) Query: 2 HTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQM 54 H +E DIN S L LA RL+ D+ + MFRLG++ +A L LT M Sbjct: 27 HNNETPDSTRDINPSCLTLAHRLLRDDREAGMFRLGVSAPLADLLPTLTRAWM 79 >UniRef50_A4JT01 Putative uncharacterized protein n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JT01_BURVG Length = 74 Score = 43.5 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 32/60 (53%) Query: 1 MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAET 60 M ++ + + ++ +YL L Q+++ D A LGI+ E+A+ + AL ++ L E Sbjct: 2 MEQGDICRALEALDPAYLELMQQMLKIDCDVAARELGISNEIASLIIALKPAELEALVER 61 >UniRef50_C2IBQ0 ABC-type polar amino acid transport system ATPase component n=11 Tax=Gammaproteobacteria RepID=C2IBQ0_VIBCH Length = 275 Score = 40.0 bits (92), Expect = 0.022, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 1/76 (1%) Query: 9 HIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMATTLAALTLPQMVKLAETNQLVCHFR 68 + + + +Y LL R+ +D A G++ E+A +A T Q+ ++ T R Sbjct: 180 SVDEFDAAYWLLFNRVASRDPEMAKEVFGVSRELAELVAKATDSQLRHMSGTTVTHFTLR 239 Query: 69 FDSHQTITQLTQDSRV 84 F + I ++ DSR Sbjct: 240 F-APSIIEEILDDSRE 254 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.310 0.137 0.358 Lambda K H 0.267 0.0423 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 568,101,668 Number of Sequences: 3077464 Number of extensions: 16730797 Number of successful extensions: 55081 Number of sequences better than 1.0e-01: 24 Number of HSP's better than 0.1 without gapping: 68 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 55008 Number of HSP's gapped (non-prelim): 70 length of query: 116 length of database: 1,040,396,356 effective HSP length: 83 effective length of query: 33 effective length of database: 784,966,844 effective search space: 25903905852 effective search space used: 25903905852 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 87 (38.1 bits)