BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (219 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P52076 Transcriptional regulatory protein qseB n=74 Tax... 442 e-123 UniRef50_P66796 Transcriptional regulatory protein qseB n=58 Tax... 392 e-108 UniRef50_Q3SMF6 Two component Transcriptional regulator, Winged ... 242 5e-63 UniRef50_A5WDA5 Two component transcriptional regulator, winged ... 232 8e-60 UniRef50_A0KN62 DNA-binding response regulator n=41 Tax=Gammapro... 226 3e-58 UniRef50_B6J7N7 Transcriptional regulatory protein n=8 Tax=Gamma... 212 7e-54 UniRef50_A1V147 DNA-binding response regulator n=182 Tax=cellula... 208 9e-53 UniRef50_A4VI02 DNA-binding response regulator n=12 Tax=Proteoba... 208 1e-52 UniRef50_Q88JD6 DNA-binding response regulator n=6 Tax=Gammaprot... 204 1e-51 UniRef50_Q2T4E0 DNA-binding response regulator n=76 Tax=Bacteria... 203 3e-51 UniRef50_C8KZR7 Two component transcriptional regulator n=5 Tax=... 202 9e-51 UniRef50_Q6F8E2 Transcriptional regulator n=19 Tax=Acinetobacter... 197 2e-49 UniRef50_A1TXC3 Two component transcriptional regulator, winged ... 196 3e-49 UniRef50_B2TDT5 Two component transcriptional regulator, winged ... 193 4e-48 UniRef50_P30843 Transcriptional regulatory protein basR n=126 Ta... 193 4e-48 UniRef50_B2JHN0 Two component transcriptional regulator, winged ... 192 1e-47 UniRef50_C6CH89 Two component transcriptional regulator, winged ... 191 2e-47 UniRef50_B9K181 Two component response regulator n=3 Tax=Rhizobi... 191 2e-47 UniRef50_Q2BR69 Two component Transcriptional regulator, Winged ... 191 2e-47 UniRef50_B7S3C0 Response regulator receiver domain protein n=1 T... 191 2e-47 UniRef50_B6QYV6 DNA-binding response regulator n=1 Tax=Pseudovib... 190 2e-47 UniRef50_Q15Y65 Two component transcriptional regulator, winged ... 189 5e-47 UniRef50_A7IE82 Two component transcriptional regulator, winged ... 189 7e-47 UniRef50_Q2KYE7 Two-component system response regulator n=7 Tax=... 188 1e-46 UniRef50_A9BQG9 Two component transcriptional regulator, winged ... 187 2e-46 UniRef50_B3PG57 Response regulator receiver domain protein n=5 T... 187 2e-46 UniRef50_C1TR79 Response regulator with CheY-like receiver domai... 187 3e-46 UniRef50_A0KWE7 Two component transcriptional regulator, winged ... 186 4e-46 UniRef50_Q1QIC0 Two component transcriptional regulator, winged ... 186 6e-46 UniRef50_B4RXL0 Response regulator n=2 Tax=Gammaproteobacteria R... 184 2e-45 UniRef50_Q48H36 DNA-binding response regulator n=6 Tax=Gammaprot... 183 3e-45 UniRef50_C3NYL4 DNA-binding response regulator n=36 Tax=Vibriona... 182 5e-45 UniRef50_Q2T0V1 DNA-binding response regulator n=139 Tax=cellula... 182 7e-45 UniRef50_B1ZS16 Two component transcriptional regulator, winged ... 182 8e-45 UniRef50_B9TDT4 Two-component system sensor histidine kinase/res... 181 1e-44 UniRef50_C6QB49 Two component transcriptional regulator, winged ... 181 2e-44 UniRef50_UPI0001745DFF Response regulator consisting of a CheY-l... 181 2e-44 UniRef50_A9IK50 Transcriptional regulatory protein n=7 Tax=Prote... 181 2e-44 UniRef50_B0KKE4 Two component transcriptional regulator, winged ... 180 3e-44 UniRef50_A6W2Y0 Two component transcriptional regulator, winged ... 179 4e-44 UniRef50_B2HUW9 Response regulator consisting of a CheY-like rec... 179 8e-44 UniRef50_Q20YF2 Two component transcriptional regulator, winged ... 179 8e-44 UniRef50_Q2IUG0 Two component transcriptional regulator, winged ... 178 1e-43 UniRef50_C0VPI8 Two-component response regulator n=4 Tax=Acineto... 177 2e-43 UniRef50_A6W3P8 Two component transcriptional regulator, winged ... 177 2e-43 UniRef50_Q6FA81 Putative two-component response regulator n=1 Ta... 177 2e-43 UniRef50_B8IU63 Two component transcriptional regulator, winged ... 177 3e-43 UniRef50_B0TXH6 Response regulator receiver protein n=18 Tax=Fra... 176 3e-43 UniRef50_Q480M1 Response regulator n=1 Tax=Colwellia psychreryth... 176 4e-43 UniRef50_A4SHT1 Two-component system response regulator n=10 Tax... 176 6e-43 UniRef50_B5VWD3 Multi-component transcriptional regulator, winge... 175 8e-43 UniRef50_D2QX61 Two component transcriptional regulator, winged ... 175 9e-43 UniRef50_Q1H1R2 Two component transcriptional regulator, winged ... 174 1e-42 UniRef50_B2UJM1 Two component transcriptional regulator, winged ... 174 2e-42 UniRef50_B4WPA6 Response regulator receiver domain protein n=1 T... 174 3e-42 UniRef50_Q2W278 Response regulator consisting of a CheY-like rec... 173 5e-42 UniRef50_C8WRL2 Two component transcriptional regulator, winged ... 171 2e-41 UniRef50_C6NUN9 Two component transcriptional regulator, winged ... 171 2e-41 UniRef50_Q89NT7 Two-component response regulator n=1 Tax=Bradyrh... 171 2e-41 UniRef50_Q026B5 Two component heavy metal response transcription... 171 2e-41 UniRef50_Q8GP20 Swarming motility regulation protein rssB n=14 T... 171 2e-41 UniRef50_C5CE19 Two component transcriptional regulator, winged ... 171 2e-41 UniRef50_A4JSE5 Sensor protein n=21 Tax=Proteobacteria RepID=A4J... 170 3e-41 UniRef50_A6T2K6 Two-component response regulator n=20 Tax=Proteo... 170 3e-41 UniRef50_Q20WN2 Two component transcriptional regulator, winged ... 169 5e-41 UniRef50_B9MHH2 Two component transcriptional regulator, winged ... 169 8e-41 UniRef50_Q2L1Q6 Two-component response regulator n=3 Tax=Proteob... 168 9e-41 UniRef50_C8PY86 DNA-binding response regulator n=1 Tax=Enhydroba... 168 1e-40 UniRef50_A0RG02 Two-component response regulator n=92 Tax=Bacter... 168 1e-40 UniRef50_P22104 Transcriptional regulatory protein tctD n=145 Ta... 167 2e-40 UniRef50_A3SUZ3 Two component transcriptional regulator, winged ... 167 3e-40 UniRef50_B5JD22 Response regulator receiver domain protein n=1 T... 166 4e-40 UniRef50_A4JRJ8 Two component transcriptional regulator, winged ... 166 5e-40 UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC... 166 5e-40 UniRef50_Q7CWZ7 Two component response regulator n=2 Tax=Alphapr... 166 5e-40 UniRef50_B2IXN9 Multi-component transcriptional regulator, winge... 166 6e-40 UniRef50_B1ZVS5 Two component transcriptional regulator, winged ... 165 8e-40 UniRef50_C6RM27 Transcriptional regulatory protein QseB n=1 Tax=... 165 8e-40 UniRef50_A0LPJ2 Two component transcriptional regulator, winged ... 165 9e-40 UniRef50_C4I5X0 DNA-binding response regulator n=78 Tax=Bacteria... 165 1e-39 UniRef50_Q47456 Transcriptional regulatory protein pcoR n=99 Tax... 165 1e-39 UniRef50_Q2RPG3 Two component transcriptional regulator, winged ... 164 1e-39 UniRef50_Q2JAC4 Two component transcriptional regulator, winged ... 164 2e-39 UniRef50_B4SPK8 Two component transcriptional regulator, winged ... 163 4e-39 UniRef50_A6WIX6 Two component transcriptional regulator, winged ... 163 4e-39 UniRef50_Q47EV7 Response regulator receiver:Transcriptional regu... 163 4e-39 UniRef50_B8HL49 Multi-component transcriptional regulator, winge... 163 5e-39 UniRef50_B7GFY6 DNA-binding response regulator, OmpR family (REC... 162 6e-39 UniRef50_B5ZHN8 Two component transcriptional regulator, winged ... 162 7e-39 UniRef50_A6CDX9 Two component transcriptional regulator, winged ... 162 1e-38 UniRef50_D1B9J7 Two component transcriptional regulator, winged ... 161 1e-38 UniRef50_B9XE94 Two component transcriptional regulator, winged ... 161 2e-38 UniRef50_C6BHC0 Two component transcriptional regulator, winged ... 161 2e-38 UniRef50_B9KBQ0 Response regulator n=6 Tax=Thermotogaceae RepID=... 161 2e-38 UniRef50_Q21TS4 Two component transcriptional regulator, winged ... 160 2e-38 UniRef50_Q2P6R9 Two-component system regulatory protein n=28 Tax... 160 2e-38 UniRef50_A0PWB4 Response regulator mprA n=284 Tax=Bacteria RepID... 160 3e-38 UniRef50_B1C8W4 Putative uncharacterized protein n=1 Tax=Anaerof... 160 3e-38 UniRef50_B2TJG1 DNA-binding response regulator n=4 Tax=Clostridi... 160 4e-38 UniRef50_A5UWJ8 Two component transcriptional regulator, winged ... 159 5e-38 UniRef50_A7ZEI3 Transcriptional activator protein CopR n=9 Tax=B... 159 6e-38 UniRef50_B1HZW1 Transcriptional regulatory protein cutR (Defecti... 159 7e-38 UniRef50_A9BP99 Two component transcriptional regulator, winged ... 159 7e-38 UniRef50_D2QKB6 Two component transcriptional regulator, winged ... 158 1e-37 UniRef50_B7QTW7 Two-component response regulator n=1 Tax=Ruegeri... 158 1e-37 UniRef50_D1ST94 Two component transcriptional regulator, winged ... 158 1e-37 UniRef50_Q2SPE2 Response regulator consisting of a CheY-like rec... 158 1e-37 UniRef50_B4WMF1 Response regulator receiver domain protein n=2 T... 158 1e-37 UniRef50_D1BPS5 Two component transcriptional regulator, winged ... 157 2e-37 UniRef50_C4XS15 OmpR family two-component response regulator n=2... 157 2e-37 UniRef50_A2SKN3 Two component transcriptional regulator, winged ... 157 3e-37 UniRef50_B5JZG0 Two-component transcriptional regulator, winged ... 157 3e-37 UniRef50_A9I4J2 Two component response regulator n=11 Tax=Burkho... 157 3e-37 UniRef50_A4AIS8 Two-component system, regulatory protein n=2 Tax... 157 3e-37 UniRef50_D2PLZ1 Two component transcriptional regulator, winged ... 157 3e-37 UniRef50_A5VCP5 Two component transcriptional regulator, winged ... 157 3e-37 UniRef50_A9BTX9 Two component transcriptional regulator, winged ... 156 4e-37 UniRef50_C7NAQ8 Two component transcriptional regulator, winged ... 156 5e-37 UniRef50_Q7P0H4 Probable two-component system response regulator... 156 6e-37 UniRef50_Q2IGB7 Two component transcriptional regulator, winged ... 155 6e-37 UniRef50_A5VEY8 Two component transcriptional regulator, winged ... 155 6e-37 UniRef50_B7K2S9 Two component transcriptional regulator, winged ... 155 7e-37 UniRef50_B2JBG7 Two component transcriptional regulator, winged ... 155 7e-37 UniRef50_C6LI81 DNA-binding response regulator DltR n=2 Tax=Clos... 155 7e-37 UniRef50_Q1NHM9 DNA-binding response regulator n=1 Tax=Sphingomo... 155 8e-37 UniRef50_A4U105 Response regulators consisting of a CheY-like re... 155 8e-37 UniRef50_C1A8B6 OmpR family two-component response regulator n=1... 155 9e-37 UniRef50_C7Q501 Two component transcriptional regulator, winged ... 155 1e-36 UniRef50_P0A4I1 Transcriptional regulatory protein cutR n=91 Tax... 154 1e-36 UniRef50_A9HHL1 Probable two-component response regulator transc... 154 1e-36 UniRef50_B4DAQ3 Two component transcriptional regulator, winged ... 154 1e-36 UniRef50_B4VMC7 Response regulator receiver domain protein n=1 T... 154 2e-36 UniRef50_C6XSY6 Response regulator receiver n=1 Tax=Pedobacter h... 154 2e-36 UniRef50_B8G869 Two component transcriptional regulator, winged ... 154 2e-36 UniRef50_Q1R1E2 Two component heavy metal response transcription... 154 2e-36 UniRef50_Q8DHN5 Two-component response regulator n=2 Tax=Chrooco... 154 2e-36 UniRef50_A9I724 Two-component system response regulator n=5 Tax=... 154 2e-36 UniRef50_Q6AQP4 Probable two-component system response regulator... 154 2e-36 UniRef50_A8ZNT0 Two-component transcriptional regulator/diguanyl... 154 2e-36 UniRef50_Q0VPT5 DNA-binding heavy metal response regulator, puta... 154 2e-36 UniRef50_A5N1L7 Predicted transcriptional regulator n=8 Tax=Bact... 154 2e-36 UniRef50_C9XWL0 Transcriptional regulatory protein qseB n=1 Tax=... 154 2e-36 UniRef50_B2V7S5 Two component transcriptional regulator, winged ... 154 2e-36 UniRef50_D1B4N2 Response regulator receiver n=1 Tax=Sulfurospiri... 154 2e-36 UniRef50_B8DZ94 Two component transcriptional regulator, winged ... 154 2e-36 UniRef50_UPI00016B25CE two component transcriptional regulator, ... 154 3e-36 UniRef50_B1ZUL4 Two component transcriptional regulator, winged ... 153 4e-36 UniRef50_Q2G7V2 Two component transcriptional regulator, winged ... 153 4e-36 UniRef50_B7K7W8 Multi-component transcriptional regulator, winge... 153 5e-36 UniRef50_B2IZ13 Sensor protein n=11 Tax=Cyanobacteria RepID=B2IZ... 153 5e-36 UniRef50_A9H3V0 Two component Transcriptional regulator n=96 Tax... 152 5e-36 UniRef50_B4B6S6 Multi-component transcriptional regulator, winge... 152 6e-36 UniRef50_A6EUI4 DNA-binding heavy metal response regulator, puta... 152 7e-36 UniRef50_B1VIL1 Two-component system response regulator n=3 Tax=... 152 8e-36 UniRef50_Q2T1W7 DNA-binding response regulator n=22 Tax=Proteoba... 152 9e-36 UniRef50_B0S0W9 Two-component response regulator n=9 Tax=Clostri... 152 9e-36 UniRef50_C7LY45 Two component transcriptional regulator, winged ... 152 1e-35 UniRef50_D0XW93 Two component transcriptional regulator, winged ... 152 1e-35 UniRef50_C5NUZ8 Response regulator ArlR n=4 Tax=Bacteria RepID=C... 152 1e-35 UniRef50_UPI0001C16F99 Multi-component Transcriptional regulator... 152 1e-35 UniRef50_B5WI25 Two component transcriptional regulator, winged ... 152 1e-35 UniRef50_B9ZMZ7 Two component transcriptional regulator, winged ... 152 1e-35 UniRef50_C1SIE7 Response regulator with CheY-like receiver domai... 152 1e-35 UniRef50_Q2RYR0 Response regulator receiver domain protein n=2 T... 151 1e-35 UniRef50_Q2SKY7 Response regulator consisting of a CheY-like rec... 151 1e-35 UniRef50_Q2YB58 Two component transcriptional regulator, winged ... 151 1e-35 UniRef50_B9P733 Predicted protein n=13 Tax=cellular organisms Re... 151 1e-35 UniRef50_B4WME0 Response regulator receiver domain protein n=1 T... 151 1e-35 UniRef50_A1RNU1 Two component transcriptional regulator, winged ... 151 1e-35 UniRef50_B2J1E6 Multi-component transcriptional regulator, winge... 151 1e-35 UniRef50_B4WSX3 Response regulator receiver domain protein n=1 T... 151 2e-35 UniRef50_B8H4H9 Two-component response regulator protein n=9 Tax... 151 2e-35 UniRef50_C4ZLE7 Two component transcriptional regulator, winged ... 151 2e-35 UniRef50_B7CCX3 Putative uncharacterized protein n=1 Tax=Eubacte... 150 2e-35 UniRef50_A3K9L3 Two-component system regulatory protein n=1 Tax=... 150 2e-35 UniRef50_Q5QUA5 Response regulator (CheY, wHTH domains) n=1 Tax=... 150 2e-35 UniRef50_Q81I47 Two-component response regulator n=76 Tax=Firmic... 150 2e-35 UniRef50_C4ZBN4 Response regulator n=31 Tax=Bacteria RepID=C4ZBN... 150 2e-35 UniRef50_Q44006 Transcriptional activator protein czcR n=330 Tax... 150 3e-35 UniRef50_C9YE22 Response regulator mprA n=1 Tax=Curvibacter puta... 150 3e-35 UniRef50_C7PAJ7 Two component transcriptional regulator, winged ... 150 3e-35 UniRef50_Q3Z755 DNA-binding response regulator n=2 Tax=Dehalococ... 150 3e-35 UniRef50_A8F5U3 Two component transcriptional regulator, winged ... 150 4e-35 UniRef50_B9JKK7 Two-component response regulator protein n=1 Tax... 150 4e-35 UniRef50_C6QDD0 Two component transcriptional regulator, winged ... 150 4e-35 UniRef50_A1TI70 Two component transcriptional regulator, winged ... 150 4e-35 UniRef50_C0QL69 Transcriptional regulatory protein n=1 Tax=Desul... 149 5e-35 UniRef50_Q04HD6 DNA-binding response regulator, OmpR family (Rec... 149 7e-35 UniRef50_Q01473 Protein rcaC n=1 Tax=Fremyella diplosiphon RepID... 149 9e-35 UniRef50_Q12T20 Two component transcriptional regulator, winged ... 149 9e-35 UniRef50_Q2S8G9 Response regulator consisting of a CheY-like rec... 149 9e-35 UniRef50_C1F588 TcrA n=1 Tax=Acidobacterium capsulatum ATCC 5119... 148 1e-34 UniRef50_UPI00016C506D two component transcriptional regulator, ... 148 1e-34 UniRef50_B0C620 Two component transcriptional regulator, winged ... 148 1e-34 UniRef50_A3QGG3 Two component transcriptional regulator, winged ... 148 1e-34 UniRef50_C9Z8Q7 Putative two-component response regulator n=1 Ta... 148 1e-34 UniRef50_Q3B3K7 Two component transcriptional regulator, winged ... 148 1e-34 UniRef50_UPI00017468BB two component transcriptional regulator, ... 148 2e-34 UniRef50_A8SVV6 Putative uncharacterized protein n=1 Tax=Coproco... 148 2e-34 UniRef50_C1XYD1 Response regulator with CheY-like receiver domai... 147 2e-34 UniRef50_C8SKU4 Two component transcriptional regulator, winged ... 147 2e-34 UniRef50_B8G7R1 Two component transcriptional regulator, winged ... 147 2e-34 UniRef50_B7JEB2 Alkaline phosphatase synthesis transcriptional r... 147 2e-34 UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6... 147 3e-34 UniRef50_Q3ID21 DNA-binding response regulator of two-component ... 147 3e-34 UniRef50_C0C014 Putative uncharacterized protein n=2 Tax=Clostri... 147 3e-34 UniRef50_A1SID6 Two component transcriptional regulator, winged ... 147 3e-34 UniRef50_A0YP32 Two-component response regulator n=1 Tax=Lyngbya... 147 3e-34 UniRef50_C1F2N1 DNA-binding response regulator n=1 Tax=Acidobact... 147 3e-34 UniRef50_B1Y345 Two component transcriptional regulator, winged ... 147 3e-34 UniRef50_B5JI66 Response regulator receiver domain protein n=1 T... 147 3e-34 UniRef50_Q3MGM2 Sensor protein n=22 Tax=Bacteria RepID=Q3MGM2_ANAVT 147 3e-34 UniRef50_Q12PS6 Two component transcriptional regulator, winged ... 147 3e-34 UniRef50_B6FX18 Putative uncharacterized protein n=1 Tax=Clostri... 146 4e-34 UniRef50_Q6MHZ0 Two component response regulator n=1 Tax=Bdellov... 146 4e-34 UniRef50_A4AF30 Two component transcriptional regulator, winged ... 146 4e-34 UniRef50_A4CE30 Probable two-component response regulator transc... 146 4e-34 UniRef50_A9AWM9 Two component transcriptional regulator, winged ... 146 5e-34 UniRef50_Q5SJK6 Response regulator n=6 Tax=Deinococci RepID=Q5SJ... 146 5e-34 UniRef50_UPI0001698E96 transcriptional regulatory protein n=1 Ta... 146 5e-34 UniRef50_C7IFX1 Two component transcriptional regulator, winged ... 146 5e-34 UniRef50_A6Q965 Two-component response regulator n=1 Tax=Sulfuro... 146 6e-34 UniRef50_A9BVB6 Two component transcriptional regulator, winged ... 145 6e-34 UniRef50_C5EI97 Response regulator receiver protein n=8 Tax=Bact... 145 6e-34 UniRef50_Q6ADD5 Two-component system, regulatory protein n=1 Tax... 145 7e-34 UniRef50_P55701 Probable transcriptional regulatory protein y4xI... 145 7e-34 UniRef50_Q1LIY7 Two component transcriptional regulator, winged ... 145 7e-34 UniRef50_C3X1J5 Response regulator receiver:Transcriptional regu... 145 8e-34 UniRef50_C8WMT6 Two component transcriptional regulator, winged ... 145 9e-34 UniRef50_A4XD98 Response regulator receiver n=3 Tax=Actinomyceta... 145 9e-34 UniRef50_Q3MAE8 Response regulator receiver modulated diguanylat... 145 1e-33 UniRef50_Q97LA9 Response regulator (CheY-like receiver domain an... 145 1e-33 UniRef50_C7MDU8 Response regulator with CheY-like receiver domai... 145 1e-33 UniRef50_C4RGF6 Two-component system response regulator receiver... 145 1e-33 UniRef50_C1ABP4 OmpR family two-component response regulator n=2... 145 1e-33 UniRef50_B2TEA5 Two component transcriptional regulator, winged ... 145 1e-33 UniRef50_Q2SET4 Response regulator consisting of a CheY-like rec... 144 2e-33 UniRef50_Q15TL9 Two component transcriptional regulator, winged ... 144 2e-33 UniRef50_A9CLL8 Two component response regulator n=1 Tax=Agrobac... 144 2e-33 UniRef50_B8HQE6 Two component transcriptional regulator, winged ... 144 2e-33 UniRef50_Q21ZH1 Two component transcriptional regulator, winged ... 144 2e-33 UniRef50_Q1IUY4 Two component transcriptional regulator, winged ... 144 2e-33 UniRef50_A3VEN7 DNA-binding response regulator n=8 Tax=Alphaprot... 144 2e-33 UniRef50_A6CWR0 Two-component system response regulator (Pho fam... 144 2e-33 UniRef50_C1XLR2 Response regulator with CheY-like receiver domai... 144 2e-33 UniRef50_Q03TF3 DNA-binding response regulator, OmpR family (Rec... 144 2e-33 UniRef50_A5VAJ0 Two component transcriptional regulator, winged ... 144 2e-33 UniRef50_P0A4H8 Transcriptional regulatory protein ciaR n=73 Tax... 144 2e-33 UniRef50_C1XFY4 Two component transcriptional regulator, winged ... 144 2e-33 UniRef50_A6TPN8 Two component transcriptional regulator, winged ... 144 3e-33 >UniRef50_P52076 Transcriptional regulatory protein qseB n=74 Tax=Proteobacteria RepID=QSEB_ECOLI Length = 219 Score = 442 bits (1136), Expect = e-123, Method: Compositional matrix adjust. Identities = 219/219 (100%), Positives = 219/219 (100%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN Sbjct: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK 219 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK 219 >UniRef50_P66796 Transcriptional regulatory protein qseB n=58 Tax=Gammaproteobacteria RepID=QSEB_SALTI Length = 219 Score = 392 bits (1007), Expect = e-108, Method: Compositional matrix adjust. Identities = 191/218 (87%), Positives = 206/218 (94%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD LIGDGIK GLSKMGFSVDWFT+GR GKEALYSAPYDAVILDLTLPGMDGR Sbjct: 1 MRILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 DILREWREKG++EPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEAL+RR + Sbjct: 61 DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 GQAS+ELRHG V L+PG +ATLAGEPL LKPKEFALLELL+RN GRVL RKLIEEKLY Sbjct: 121 GQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE 218 WD++V+SNAVEVHVHHLRRKLGS+FIRTVHGIGYTLG+ Sbjct: 181 WDDDVSSNAVEVHVHHLRRKLGSEFIRTVHGIGYTLGD 218 >UniRef50_Q3SMF6 Two component Transcriptional regulator, Winged helix family n=9 Tax=Proteobacteria RepID=Q3SMF6_THIDA Length = 220 Score = 242 bits (618), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 121/214 (56%), Positives = 159/214 (74%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD L+GDG+K GLS+ GF+VDW G AL + + AV+LDL LP DG Sbjct: 1 MRILLVEDDALLGDGLKAGLSQSGFAVDWLRDGEAAVTALTTERFAAVVLDLGLPRRDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L+ R +G PVL+LTARD L ++V GL LGADDY+ KPF L EVAARL ALMRR + Sbjct: 61 SVLQWLRGRGDPTPVLVLTARDQLEDKVRGLDLGADDYVLKPFDLDEVAARLRALMRRAH 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G+++ L+ G++ LDP R T G+P+ L +EF LL +L++++G VL+R+++EE+LYT Sbjct: 121 GKSAPLLKLGDIELDPAARSVTQRGQPVDLTGREFDLLHVLLQSSGHVLTRRMLEEQLYT 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGY 214 WDE V SNA+EVHVHHLRRKLG+D IRTV G+GY Sbjct: 181 WDEGVGSNALEVHVHHLRRKLGNDVIRTVRGVGY 214 >UniRef50_A5WDA5 Two component transcriptional regulator, winged helix family n=14 Tax=Gammaproteobacteria RepID=A5WDA5_PSYWF Length = 224 Score = 232 bits (591), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 115/216 (53%), Positives = 148/216 (68%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RILLIEDD I DGI GL G VDWF+ +QG+ AL +DAV+LDLTLP DG Sbjct: 3 RILLIEDDSTIADGIVLGLKSHGMMVDWFSDAKQGEIALQDGMFDAVLLDLTLPKGDGMT 62 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 +L+ WR K PVLI+TARDA+A RV GL GADDYL KPFAL EV ARL+ALMRR+ G Sbjct: 63 VLKNWRAKHIDTPVLIITARDAIANRVAGLNAGADDYLVKPFALDEVVARLQALMRRSQG 122 Query: 122 QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTW 181 + E+R+G V P + + G+ + L KE A+LE ++ + ++ SR +E+KLY W Sbjct: 123 RCQPEVRYGEVAYQPQNQQVSYQGKMVELTIKEVAILEQMLTHPKQIHSRASLEDKLYGW 182 Query: 182 DEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLG 217 +++ SNA+EVH+HHLR+KLG+DFI T GIGY L Sbjct: 183 QQDIESNAIEVHIHHLRKKLGNDFILTKRGIGYYLN 218 >UniRef50_A0KN62 DNA-binding response regulator n=41 Tax=Gammaproteobacteria RepID=A0KN62_AERHH Length = 229 Score = 226 bits (577), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 112/218 (51%), Positives = 149/218 (68%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD+++GDG+ L G++VDW QG L S + A+ILDL LP +DG Sbjct: 1 MRILLVEDDVMLGDGMVDALRSSGYTVDWLQQGLPALSVLKSEEFAALILDLNLPDIDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +LR+ R +GQ PVLILTARDAL +RV GL G+DDY+ KPFAL E+ ARL AL+RR+ Sbjct: 61 SLLRKLRREGQTLPVLILTARDALDDRVLGLDAGSDDYMVKPFALQELNARLRALVRRSK 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 GQA L +G + L P + T GEP+ L P E+ LL+ L+ +GRVLS+ +++ LY Sbjct: 121 GQAQAVLEYGELQLYPESQQVTYRGEPVKLTPHEYKLLQELITQSGRVLSKDQLQQSLYG 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE 218 WDE SNAVEVH+HHLR+K SD IR + G+GY + + Sbjct: 181 WDEGAESNAVEVHIHHLRKKFYSDLIRNIRGVGYIVPQ 218 >UniRef50_B6J7N7 Transcriptional regulatory protein n=8 Tax=Gammaproteobacteria RepID=B6J7N7_COXB1 Length = 232 Score = 212 bits (539), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 98/221 (44%), Positives = 148/221 (66%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSA--PYDAVILDLTLPGMD 58 MR+LL+EDD +GDGI+ GL + G ++DW G+ + L S +D +ILDL LP Sbjct: 10 MRVLLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRS 69 Query: 59 GRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR 118 G D+L+ REK PV+ILTARD + +R++GL G+DDY+ KPF L E+ AR+ A+ RR Sbjct: 70 GLDVLKTIREKNDPTPVVILTARDTVDDRIKGLDAGSDDYMTKPFDLEELCARMRAMQRR 129 Query: 119 TNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 + +A + HG++ LDP + T + + + +EFALL+ L+ NAGRV+SR+ + + L Sbjct: 130 SKERAKPIISHGDITLDPASHVVTFKKKEVMVSRREFALLQKLLENAGRVISREQLNQTL 189 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK 219 Y W E + SNA+EVH+H+LR++ G+ IRT+ G+GY + +K Sbjct: 190 YGWGENIDSNALEVHIHNLRKRFGAKLIRTIRGVGYMVEKK 230 >UniRef50_A1V147 DNA-binding response regulator n=182 Tax=cellular organisms RepID=A1V147_BURMS Length = 283 Score = 208 bits (530), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 112/214 (52%), Positives = 146/214 (68%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 ILL+EDD +I +G++ L G +VDW G AL YD ++LDL LP DG D+ Sbjct: 66 ILLVEDDRMIAEGVRKALKADGCAVDWVQDGDAALTALGGEAYDLLLLDLGLPKRDGIDV 125 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQ 122 LR R +G PVLILTARDA+A+RV+GL GADDYL KPF L E+AAR+ AL+RR +G+ Sbjct: 126 LRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRRQSGR 185 Query: 123 ASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTWD 182 + + +RHG + LDP TL G P+ L +EFALLE L+ G VLS+ +EEK+Y W Sbjct: 186 SESMIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYGWG 245 Query: 183 EEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTL 216 EE+ SN VEV++H LR+KLGSD IR V G+GY + Sbjct: 246 EEIGSNTVEVYIHALRKKLGSDLIRNVRGLGYMV 279 >UniRef50_A4VI02 DNA-binding response regulator n=12 Tax=Proteobacteria RepID=A4VI02_PSEU5 Length = 234 Score = 208 bits (529), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 103/214 (48%), Positives = 141/214 (65%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD +G+GI+T L G++VDW G AL ++ VILDL LP +DG Sbjct: 16 MRILLVEDDRALGEGIRTALKPEGYTVDWLQDGASALHALNHESFELVILDLGLPRLDGL 75 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++L+ R G PVL+LTARDA ++R+ GL GADDYL KPF + E+ ARL AL+RR+ Sbjct: 76 ELLKRLRAAGNPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVAELKARLRALLRRSF 135 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + L + ++LDP + + G P+ L KEF LL L+ GRVL+R +++ LY Sbjct: 136 NRPEPVLEYRGILLDPVNQQVSYQGTPINLPRKEFVLLHELLAQPGRVLTRDRLQQVLYG 195 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGY 214 WDE+V SNA+EVH+HHLR+K + IRTV G+GY Sbjct: 196 WDEDVESNALEVHIHHLRKKFFPELIRTVRGVGY 229 >UniRef50_Q88JD6 DNA-binding response regulator n=6 Tax=Gammaproteobacteria RepID=Q88JD6_PSEPK Length = 220 Score = 204 bits (520), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 107/214 (50%), Positives = 141/214 (65%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LL+EDD+ +G+GI GL + G+++DW G G AL +D VILDL LP MDG Sbjct: 1 MRLLLVEDDIALGEGICDGLRQEGYTLDWLRDGVSGLHALQHETFDLVILDLGLPRMDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++LR R G PVLILTARDAL +R+ GL GADDYL KPF L E+ ARL AL+RR+ Sbjct: 61 ELLRRLRAGGDSLPVLILTARDALDDRIAGLDAGADDYLVKPFDLNELKARLRALLRRSV 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G+A + H V LDP + G + L PKE+ LL L+ G+V +R+ + + LY Sbjct: 121 GRAKVLIEHAGVSLDPTTQQVQYNGVEVVLTPKEYVLLHELLAQPGKVFTRERLTQLLYG 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGY 214 WDEE SN +EV+++HLR+KL + IRTV GIGY Sbjct: 181 WDEEPESNTLEVNIYHLRKKLFNGLIRTVRGIGY 214 >UniRef50_Q2T4E0 DNA-binding response regulator n=76 Tax=Bacteria RepID=Q2T4E0_BURTA Length = 255 Score = 203 bits (517), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 108/218 (49%), Positives = 144/218 (66%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LL+EDD LIG G++ GL + GF+VDW G AL + Y ++LDL LP DG Sbjct: 36 MRVLLVEDDPLIGSGLEQGLKQEGFAVDWVQNGDAATLALRTTSYGLLLLDLGLPDKDGL 95 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L R + PV+++TARDAL +R+ GL GADDYL KPFAL E+ AR+ A+ RR Sbjct: 96 AVLAALRRRDDALPVIVVTARDALPDRIAGLDCGADDYLVKPFALEELLARIRAVNRRQT 155 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G+A L G + LDP + G+ + L PKEF LL LMR G V+SR+ EE+LY+ Sbjct: 156 GRAQTVLTVGALRLDPARHQVWRGGDEVALSPKEFVLLHELMREPGAVISREQFEERLYS 215 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE 218 W EE+ SNAV+VH+H+LR+KLG D I TV G+GY +G+ Sbjct: 216 WGEEIESNAVQVHIHNLRKKLGHDTILTVRGVGYRIGD 253 >UniRef50_C8KZR7 Two component transcriptional regulator n=5 Tax=Proteobacteria RepID=C8KZR7_9PAST Length = 225 Score = 202 bits (513), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 99/218 (45%), Positives = 142/218 (65%), Gaps = 2/218 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD +I D + L ++VDW G+ +EAL YD V+LDL LPG DG Sbjct: 1 MRILLVEDDRMIADAVSANLKDNHYAVDWVNNGKTAEEALMIQSYDLVLLDLGLPGQDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L R+K PVLI+TARD L R+ GL GADDY+ KPF + E+ AR+ A++RR Sbjct: 61 QVLSHIRQKKNSTPVLIVTARDDLDSRLSGLDGGADDYIIKPFDMAELQARMRAVLRRHG 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGE--PLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 GQ+S +L +G + LDP + +AG+ +TL KEF++L L+ AG +LSR +E+K+ Sbjct: 121 GQSSPKLTNGVITLDPTSYVVEIAGQNSTITLSNKEFSVLHALISRAGMILSRADLEDKI 180 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTL 216 Y W EEV SNA++ +H LR+K+G + I+ V G+G+ + Sbjct: 181 YAWGEEVESNAIDFLIHGLRKKIGKEQIKNVRGVGWMM 218 >UniRef50_Q6F8E2 Transcriptional regulator n=19 Tax=Acinetobacter RepID=Q6F8E2_ACIAD Length = 226 Score = 197 bits (502), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 102/223 (45%), Positives = 145/223 (65%), Gaps = 7/223 (3%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +IL+IEDD +I + T L F V+W G G L +D V+LDL LP MDG Sbjct: 3 KILIIEDDFMIAESTITLLKYHQFEVEWVNNGFDGLAHLAKQSFDLVLLDLGLPMMDGMQ 62 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 +L++ R+K PVLI++ARD L RVEGL GADDYL KP+ E+ AR+ AL+RRTN Sbjct: 63 VLKQIRQKTGV-PVLIISARDQLENRVEGLNQGADDYLIKPYEFDELLARINALLRRTNS 121 Query: 122 QASNELR------HGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIE 175 + ++ L+ +G V+L+ K IAT G+ + L +E+A+L LM + ++ S+ +E Sbjct: 122 KDASSLQQDQVLSNGEVILNVEKHIATFQGKEIELSNREWAILIPLMTHPNKIFSKANLE 181 Query: 176 EKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE 218 +KLY +D EVTSN +EV++HHLR KLG +FIRT+ G+GY LG+ Sbjct: 182 DKLYDFDSEVTSNTIEVYIHHLRSKLGKNFIRTIRGLGYRLGQ 224 >UniRef50_A1TXC3 Two component transcriptional regulator, winged helix family n=2 Tax=Marinobacter RepID=A1TXC3_MARAV Length = 227 Score = 196 bits (499), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 102/219 (46%), Positives = 140/219 (63%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL EDD + + + + L +VDW G+Q AL + +D ILDLTLP +DG Sbjct: 1 MRILLTEDDHPLANTMLSMLRDDQNTVDWVDDGQQALNALLNESFDLAILDLTLPRVDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 DI+R+ RE+G P++ILTAR L E+++GL GADDYL KPFA+ E+ AR+ A+ RR + Sbjct: 61 DIVRQVREQGVELPIIILTARSELTEKLQGLDAGADDYLTKPFAMSELKARIRAVTRRRS 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G + L+ G ++LDP + E L E +L LMR+ +V +R+ +EE+LY Sbjct: 121 GTRVSGLKVGRLVLDPDSAQLQVGTETFVLPRSELQILHYLMRHPDQVATRRRLEEQLYG 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK 219 WD+ SNA+EVHVHHLRR+LG IRTV G+GY L K Sbjct: 181 WDQGAESNALEVHVHHLRRRLGKQAIRTVRGVGYMLDSK 219 >UniRef50_B2TDT5 Two component transcriptional regulator, winged helix family n=8 Tax=Proteobacteria RepID=B2TDT5_BURPP Length = 227 Score = 193 bits (490), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 103/220 (46%), Positives = 141/220 (64%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD+ IG + L +SVDW G G++A+ +A Y V+LDL LPG+ G Sbjct: 1 MRILLVEDDLQIGQSLLRALKDADYSVDWVRDGVAGRDAMANAEYTVVLLDLGLPGLSGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++L+ R G PVLILTARD L RV+GL +GADDYL KPF + E+ AR+ A++RR Sbjct: 61 ELLKSSRAAGNAVPVLILTARDDLDSRVQGLDVGADDYLLKPFDVPELLARIRAVLRRKA 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G AS+ L ++ LD KR T G L +EFAL+ + G +LSR+ +E++LY Sbjct: 121 GYASSRLGDESLSLDLDKRTLTCNGATTVLSAREFALMLAFLERPGTILSREQLEDRLYG 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYT--LGE 218 W +EV SNAV+V +H +R+K G IR V G+G+T LGE Sbjct: 181 WGKEVESNAVDVLIHSVRKKFGLSVIRNVRGLGWTVMLGE 220 >UniRef50_P30843 Transcriptional regulatory protein basR n=126 Tax=Gammaproteobacteria RepID=BASR_ECOLI Length = 222 Score = 193 bits (490), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 100/216 (46%), Positives = 137/216 (63%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL++EDD L+ G+ G++ D T R +++L + Y V+LDL LP DG Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 L R+K PVLILTARD L +++ GL +GADDYL KPFAL E+ AR+ AL+RR N Sbjct: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 Q +EL GN+ L+ G+R + GE L L PKE+ALL LM AG + R+++ +Y Sbjct: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTL 216 WD E ++N +EVH+H+LR K+G IRTV G GY L Sbjct: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 >UniRef50_B2JHN0 Two component transcriptional regulator, winged helix family n=4 Tax=Burkholderia RepID=B2JHN0_BURP8 Length = 228 Score = 192 bits (487), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 103/216 (47%), Positives = 138/216 (63%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD LIG G++ L GF+VDW G+ + AL + Y VILDL LP + G Sbjct: 10 MRILLVEDDDLIGSGLEVALRNAGFTVDWARDGQHAELALATTHYLLVILDLGLPKLSGM 69 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 D+L+ R +G PVL+LTA+D A++V GL GADDYL KPF L E+ +R AL+RR+ Sbjct: 70 DLLKSLRLRGNEIPVLVLTAKDTAADKVRGLDAGADDYLGKPFDLAELISRCRALIRRSQ 129 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G+ S + + +DP + + G + L +E+A+L L+ +AG R IEE LY Sbjct: 130 GRGSELIEWRGLSVDPVAQTVSKDGARVPLTAREWAVLIHLLTHAGVPQPRARIEESLYG 189 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTL 216 W EEV SNA+EVHV +LR+KLG D IRTV G GY + Sbjct: 190 WHEEVESNAIEVHVSNLRKKLGGDVIRTVRGFGYVV 225 >UniRef50_C6CH89 Two component transcriptional regulator, winged helix family n=2 Tax=Dickeya RepID=C6CH89_DICZE Length = 232 Score = 191 bits (485), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 91/216 (42%), Positives = 141/216 (65%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M++L++EDD L+ +G+ + G+ D + ++ + SA Y V+LDL LP DG Sbjct: 1 MKLLIVEDDALLQEGLLQAMRNEGYVCDCASTAKEADALIASAHYSLVVLDLGLPDEDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L WR ++PVLILTARD + +RV GL +GADDY+ KPFAL E AR+ AL+RR Sbjct: 61 TLLGRWRRNHYQQPVLILTARDTVDDRVTGLDVGADDYMIKPFALSEFQARVRALIRRHQ 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G + + +R N+ LD + L +P+ L PKEFA+L L+ AG + R+++ + LY+ Sbjct: 121 GSSDSWIRVDNITLDLNNQQVMLDDKPIVLTPKEFAILSRLILKAGSQVHREVLHQDLYS 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTL 216 WD++ +SN++EVH+H+LR+K+G + I+T+ G GY L Sbjct: 181 WDDDPSSNSLEVHIHNLRQKIGKNRIKTLRGFGYLL 216 >UniRef50_B9K181 Two component response regulator n=3 Tax=Rhizobium/Agrobacterium group RepID=B9K181_AGRVS Length = 218 Score = 191 bits (485), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 99/216 (45%), Positives = 134/216 (62%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL++EDD+++G +K K + VD G G A+ Y VILD+ LP G Sbjct: 1 MRILVVEDDVILGSSLKKAFEKHAYGVDLMRDGESGLLAIQDNDYAVVILDVNLPKASGF 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +++R R G + PVL+LTA D++ RVEGL GADDYL KPF L E+ AR+ AL RR Sbjct: 61 EVVRTLRASGNKVPVLLLTALDSIRSRVEGLDEGADDYLVKPFDLDELLARVRALARRYE 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G+ +R GNV LDP IA G PL + KEF LL+LLM AGR +++ IE LY Sbjct: 121 GRTETLIRCGNVELDPSAMIARQNGTPLHVAGKEFHLLKLLMERAGRYVTKSDIEYALYD 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTL 216 V SN +EV ++ LR+KLG+DFI+++ G+GY + Sbjct: 181 ISAMVESNTIEVTIYSLRKKLGADFIKSIRGVGYMV 216 >UniRef50_Q2BR69 Two component Transcriptional regulator, Winged helix family protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BR69_9GAMM Length = 219 Score = 191 bits (485), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 100/219 (45%), Positives = 137/219 (62%), Gaps = 2/219 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M +LL+EDD L+G I+ L + + VDW G + + D +ILDL LP +DG Sbjct: 3 MHVLLVEDDPLLGQVIEIKLQERQYQVDWIQSGSAVLSTVRNLHPDIIILDLNLPDIDGL 62 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +IL+ R + PVLILTAR A+ ERV GL LGADDYL KPF + E+ ARL A+ RR + Sbjct: 63 EILKRLRAENISTPVLILTARHAVEERVNGLDLGADDYLTKPFEMDELEARLRAVQRRLH 122 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G++ E+ G++ +D R G P+ +EF LL LL+ N GRV++R IE LY Sbjct: 123 GRSKEEITFGDIKIDSAARQVFFKGSPIEASRREFDLLVLLLNNTGRVMTRAKIEATLYA 182 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK 219 D V SNA+EVH+H+LR+KLG + I TV G+GY + E+ Sbjct: 183 DD--VESNALEVHIHNLRKKLGKELISTVRGVGYYVAER 219 >UniRef50_B7S3C0 Response regulator receiver domain protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S3C0_9GAMM Length = 222 Score = 191 bits (484), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 95/218 (43%), Positives = 141/218 (64%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 +RILL+EDD+ +G+ ++ L ++VDW G + + + PYD +ILDL LP + G Sbjct: 5 LRILLVEDDVQLGESLEAALRLEHYAVDWLRSGEPVRATIGATPYDLMILDLGLPEVPGI 64 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +LR+ R PVL+LTAR+ L ++V+GL GADDYL KPF + E+ AR+ L+RR Sbjct: 65 QVLRQTRADKHDIPVLLLTARNTLDDKVDGLDSGADDYLTKPFEIDELFARVRTLLRRRG 124 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 S +L + +DP R+ GE L L +E+A+LE+L+RNAGR +SR +EE +Y+ Sbjct: 125 EGRSQQLEARGITIDPVDRLVIFEGEMLDLTAREYAILEILIRNAGRFVSRPRLEEGIYS 184 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE 218 W EEV SN VEV++ LR++ GSD I T+ G+GY + + Sbjct: 185 WGEEVGSNTVEVYISRLRKRFGSDCIETMRGVGYRISQ 222 >UniRef50_B6QYV6 DNA-binding response regulator n=1 Tax=Pseudovibrio sp. JE062 RepID=B6QYV6_9RHOB Length = 222 Score = 190 bits (483), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 99/218 (45%), Positives = 137/218 (62%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LL+ED+ LI D IK L + F VDW G ++AL + +D VILDL LPG DG Sbjct: 1 MRVLLVEDERLIADAIKAFLERHEFIVDWVDDGLLAEDALRTGKFDLVILDLGLPGQDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + LR R+ P+LIL+AR+ R++GL LGADDYL KPF + E+ AR AL+RR+ Sbjct: 61 EFLRAVRDDKADVPILILSARETTKNRIDGLNLGADDYLTKPFDMEELLARCRALVRRSV 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G+ L+HG + LD ++ A G + L+P F LL +L+ GRV+S+ + EKLY Sbjct: 121 GRTRMLLQHGALTLDLDQKKACYNGAEVVLQPLAFRLLTILLERRGRVVSKSDLMEKLYG 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE 218 W+E SN +EV+V +RRK S IRT+ G+GY + E Sbjct: 181 WEENAESNVLEVYVSQIRRKTTSKLIRTIRGVGYIVDE 218 >UniRef50_Q15Y65 Two component transcriptional regulator, winged helix family n=3 Tax=Proteobacteria RepID=Q15Y65_PSEA6 Length = 222 Score = 189 bits (481), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 94/219 (42%), Positives = 135/219 (61%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD + D + L G++V+ Q AL + + +ILDL LP MDG Sbjct: 1 MRILLVEDDRSLSDALSQSLRSEGYAVNGACTAAQALSALATGEFTIMILDLGLPDMDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++LR+ P LILTARD++ +++ GL GADDYL KPF + E+ ARL + RR Sbjct: 61 EVLRQAHRNKHSVPTLILTARDSMTDKITGLDSGADDYLAKPFDMQELLARLRVMERRLG 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 S+ + GNV+LD T L +EF LL+ LM NAGR+ S+ +E KLY Sbjct: 121 TATSSLINIGNVVLDLATHQVTADNNEKELSRREFMLLKALMENAGRIQSKSQLETKLYE 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK 219 W +E++SNA+EVH+H+LR+KL DFI+T+ G+GY++ + Sbjct: 181 WGDELSSNAIEVHIHNLRKKLPKDFIKTIRGVGYSVTNR 219 >UniRef50_A7IE82 Two component transcriptional regulator, winged helix family n=5 Tax=Alphaproteobacteria RepID=A7IE82_XANP2 Length = 220 Score = 189 bits (479), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 106/214 (49%), Positives = 139/214 (64%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL++EDD ++ DG+K GL G +VD T + AL + +DAV+LD+ LP G Sbjct: 1 MRILVVEDDPVLMDGLKVGLGLAGATVDEATTCADARAALAAGRFDAVVLDVMLPDGSGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 D+L R +G PVL+LTA D +RV GL GADDYL KPF L E+ AR+ A+ RR + Sbjct: 61 DVLAGLRARGNATPVLLLTALDEAPDRVRGLDGGADDYLGKPFDLDELNARVRAIARRGH 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G+A L+ G ++LDP ATL G P+ L +EFA+L LM G + SR IEE+LY Sbjct: 121 GRAGPLLKAGALVLDPATLAATLDGLPIALSRREFAVLSALMERPGVIRSRMEIEERLYG 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGY 214 W EEV SNAVEVH+H+LR K+G + I TV G+GY Sbjct: 181 WQEEVESNAVEVHIHNLRAKVGRETIETVRGLGY 214 >UniRef50_Q2KYE7 Two-component system response regulator n=7 Tax=Burkholderiales RepID=Q2KYE7_BORA1 Length = 231 Score = 188 bits (477), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 98/218 (44%), Positives = 141/218 (64%), Gaps = 2/218 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL+ EDD ++ DG+ L G++VD G AL + P+D +ILDL LP + G Sbjct: 1 MRILIAEDDSILADGLSRSLRHNGYAVDAVRDGLAADSALAAQPFDLLILDLGLPQVTGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++LR R + PVLILTA D++ +RV+GL LGADDY+ KPFAL E+ AR+ AL RR Sbjct: 61 EVLRRLRARNSLLPVLILTAADSVEQRVKGLDLGADDYMAKPFALSELEARVRALTRRGA 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G S +RHG ++ D R+AT+ L L +E +LLE+L+ +GR++S+ + + L Sbjct: 121 GGGSTLIRHGRLVFDQTGRVATVDDHALDLSAREVSLLEILLSRSGRMVSKTQLVDHLCE 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIR--TVHGIGYTL 216 W EEV++NA+EV+VH LR+KL ++ TV G+GY L Sbjct: 181 WGEEVSTNAIEVYVHRLRKKLEPSGVKIITVRGLGYCL 218 >UniRef50_A9BQG9 Two component transcriptional regulator, winged helix family n=11 Tax=Proteobacteria RepID=A9BQG9_DELAS Length = 253 Score = 187 bits (475), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 106/227 (46%), Positives = 145/227 (63%), Gaps = 11/227 (4%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL++ED+ I G++ L + ++VD T + AL +DAV+LDL LP DG Sbjct: 22 MRILVVEDNAGIAAGLQANLEQRRYAVDVCTTVAEAWHALEMERFDAVLLDLGLPDGDGS 81 Query: 61 DILREWREKGQ-----------REPVLILTARDALAERVEGLRLGADDYLCKPFALIEVA 109 +ILR R + PVLILTARD + ER+ GL LGADDYL KPF + E+ Sbjct: 82 EILRRLRGPRRPGGDSQALPDPNTPVLILTARDQVRERIAGLDLGADDYLVKPFDIDELE 141 Query: 110 ARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVL 169 ARL A++RR GQA+ +RHG + +DP R G+ + + P+EF++L +L++ GRVL Sbjct: 142 ARLRAMLRRAGGQAAPVIRHGELEVDPAARTVRRDGKLVEMSPREFSVLWVLLQARGRVL 201 Query: 170 SRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTL 216 SR+ IEE LY+W V SNAVEVH+HHLR+KLG+ I T+ G+GY L Sbjct: 202 SRQQIEEHLYSWGTAVESNAVEVHIHHLRKKLGNASIVTMRGVGYFL 248 >UniRef50_B3PG57 Response regulator receiver domain protein n=5 Tax=Gammaproteobacteria RepID=B3PG57_CELJU Length = 219 Score = 187 bits (475), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 99/220 (45%), Positives = 145/220 (65%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+ILL+EDD L+ +G+ L + GF+V+ G+ L + P D ++LDL LP MDG Sbjct: 1 MQILLVEDDNLLAEGMMNALKRAGFAVNLSRTGKAACTYLQAEPPDILLLDLGLPDMDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 D+L+ R+K + VLILTARD+ +V GL GADDYL KPFAL E+ ARL L RR Sbjct: 61 DVLKFIRDKKLQVQVLILTARDSTNAKVLGLDAGADDYLTKPFALDELLARLRVLERRL- 119 Query: 121 GQASNELRH-GNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 G A+ + H G + L+ + + L G+ L L +E+ LL+ L+ N G + +R+ +E KLY Sbjct: 120 GTANTAMIHVGPLSLNTTQHLVLLNGDALVLSRREYMLLKALVENLGIIQTRESLEAKLY 179 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK 219 +W++EV SNA+EVH+H+LR+KL +FIRT+ G+GY + + Sbjct: 180 SWNDEVASNAIEVHIHNLRKKLPLNFIRTIRGVGYVVSRQ 219 >UniRef50_C1TR79 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TR79_9BACT Length = 222 Score = 187 bits (474), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 93/219 (42%), Positives = 140/219 (63%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 +RIL++EDD +IG+ I+ GLS+ G++VDW AL + +ILDL LP G Sbjct: 3 IRILIVEDDGMIGEEIQEGLSRRGYTVDWVRDMESAATALDLENFSMMILDLGLPDGSGL 62 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++L++ R+ G R PV+ILTA D + R+ GL GADDY+ KPF L E++AR+ AL RR Sbjct: 63 ELLQKMRDGGNRLPVIILTAWDTVPNRINGLDNGADDYMVKPFELEELSARIRALARRVR 122 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G +S +R ++ +DP + + G + L E+ LL + N G VLSR+ +E LY Sbjct: 123 GDSSPTIRIADLEIDPATKRVSKDGREVRLSHSEYVLLTTFVENVGIVLSRERLEASLYG 182 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK 219 W+++V SNA++VH+H+LR KLG+D ++ V G GY + +K Sbjct: 183 WEKDVESNAIQVHIHNLREKLGTDIVKNVRGFGYLMDKK 221 >UniRef50_A0KWE7 Two component transcriptional regulator, winged helix family n=12 Tax=Shewanella RepID=A0KWE7_SHESA Length = 219 Score = 186 bits (472), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 95/218 (43%), Positives = 141/218 (64%), Gaps = 1/218 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRI+L+ED+ L+ GI L+KMG VD + +Q + + + A++LDL LP +G+ Sbjct: 1 MRIMLVEDNELLAQGICLSLAKMGMQVDHLSSYQQALVGIKNETFSAIVLDLGLPDGNGK 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++L+ WR +G P ++LTA ++E L +GADDYL KPF + E+AAR+ A++RR Sbjct: 61 ELLKAWRAEGVSIPTIVLTANTDFDTKLECLDIGADDYLGKPFDVRELAARIRAIVRRQY 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G +N L G + +D R + + + L +EF LL L ++AGRVL+R +E+ Y Sbjct: 121 GLDNNSLNIGALSIDLNTREVSFRDQNVPLSRREFQLLLELAQSAGRVLTRNQLEQLTYG 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE 218 WD EV SN++EVH+HHLR+KL +D I+TV GIGYTL E Sbjct: 181 WD-EVGSNSIEVHIHHLRKKLANDLIKTVRGIGYTLTE 217 >UniRef50_Q1QIC0 Two component transcriptional regulator, winged helix family n=2 Tax=Nitrobacter RepID=Q1QIC0_NITHX Length = 221 Score = 186 bits (471), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 93/216 (43%), Positives = 132/216 (61%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LLIEDD + G + GL + G ++DW G G AL A + +LD+ LP M G Sbjct: 1 MRLLLIEDDAMFGKALVRGLKQNGMTIDWVRNGPDGFAALKRAEHAIALLDVGLPEMSGF 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 D+L+ R + P+LI+TARD + + V GL LGADDY+ KPF L + AR+ A++RR N Sbjct: 61 DVLKAMRGTSKAPPILIITARDQVEDMVTGLDLGADDYIVKPFELRALLARIRAIVRRVN 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 ++++ + + LDP IAT G L +EF++L LM G +LSR IE ++Y Sbjct: 121 ARSNSVVTSKEITLDPSTYIATFRGIESVLSAREFSVLHALMERPGTILSRSQIESRIYG 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTL 216 W EEV SNAV+V +H LR+K G D IR + G G+ + Sbjct: 181 WSEEVQSNAVDVVIHGLRKKYGKDIIRNIRGAGWMV 216 >UniRef50_B4RXL0 Response regulator n=2 Tax=Gammaproteobacteria RepID=B4RXL0_ALTMD Length = 221 Score = 184 bits (467), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 94/218 (43%), Positives = 130/218 (59%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD + D + L ++VD G L D V+LDL LP DG Sbjct: 1 MRILLVEDDRPLSDALALSLKNANYAVDCVYTGADAMTTLSIGQTDIVVLDLGLPDTDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++L+ R+K PVLILTARD +++++ GL GADDYL KPF + E+ ARL L RR Sbjct: 61 NVLKSIRKKNATLPVLILTARDKVSDKISGLDAGADDYLPKPFEIDELLARLRVLERRLG 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + + NV LD T+ E + L +E +L+ L+ NAGRVLS+ +E KLY Sbjct: 121 TASQTIITIKNVSLDTAHHTLTIDNETIHLPRRELMVLKALVENAGRVLSKNQLENKLYE 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE 218 W EEV SN +EVHV HLR+K+ +FI+T+ G+GY + + Sbjct: 181 WGEEVASNTIEVHVSHLRKKMPDNFIKTIRGVGYCISK 218 >UniRef50_Q48H36 DNA-binding response regulator n=6 Tax=Gammaproteobacteria RepID=Q48H36_PSE14 Length = 222 Score = 183 bits (465), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 96/218 (44%), Positives = 136/218 (62%), Gaps = 1/218 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LL+ED + + D + L + G++VDW GR + PYD ++LDL LPGM G Sbjct: 1 MRLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGATEPYDLIVLDLGLPGMPGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++L++WR KG PVLILTAR + +ER+EGL+ GADDYL KPF E+ R++AL+RR++ Sbjct: 61 EVLQQWRGKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120 Query: 121 GQASNE-LRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 G A+ L + LD G++ + G + L EF LL M + G++LS+ + E LY Sbjct: 121 GLANQPTLESAGLNLDEGRQSVSRDGVDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLG 217 + E SN +EVHV+HLRRKLG + T G GY G Sbjct: 181 DGENERDSNVIEVHVNHLRRKLGRAVVETRRGQGYLYG 218 >UniRef50_C3NYL4 DNA-binding response regulator n=36 Tax=Vibrionaceae RepID=C3NYL4_VIBCJ Length = 247 Score = 182 bits (463), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 96/216 (44%), Positives = 147/216 (68%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LL+EDD L+G+ ++ LS+ G++VDW +G AL + + A+ILDLTLP MDG Sbjct: 30 MRLLLVEDDTLLGESMQVALSRQGYTVDWLERGGGVVTALKTEQFTALILDLTLPDMDGL 89 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++LR+ R G PV+ILTARD +++RV+GL GAD+Y+ KPFAL E+ ARL ++RR++ Sbjct: 90 EVLRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRRSS 149 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G A + G + L K+ A + L L E+ +L LM AGRV+S++L+++ L+ Sbjct: 150 GSAEELISVGELDLSLSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALHG 209 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTL 216 WDE + NA+EVH+H+LR+KL + ++ V G+GY + Sbjct: 210 WDEGSSDNAIEVHIHNLRKKLPDNLVKNVRGVGYMI 245 >UniRef50_Q2T0V1 DNA-binding response regulator n=139 Tax=cellular organisms RepID=Q2T0V1_BURTA Length = 291 Score = 182 bits (462), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 99/218 (45%), Positives = 138/218 (63%), Gaps = 2/218 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL+ EDD ++ DG+ L + G++VD G + AL +D +ILDL LP M G Sbjct: 45 MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQAFDLLILDLGLPRMPGL 104 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 D+LR R + PVLILTA D++ ERV+GL LGADDY+ KPFAL E+ AR+ AL RR Sbjct: 105 DVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 164 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G +RHG++ D RIA L L +E LLE+L++ GR++S++ + + L Sbjct: 165 GGGPTVVRHGSLSFDQVGRIAYANDRVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 224 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIR--TVHGIGYTL 216 W EEV++NA+EV+VH LR+K+ +R TV G+GY L Sbjct: 225 WGEEVSNNAIEVYVHRLRKKIEPSGVRITTVRGLGYCL 262 >UniRef50_B1ZS16 Two component transcriptional regulator, winged helix family n=3 Tax=Verrucomicrobia RepID=B1ZS16_OPITP Length = 265 Score = 182 bits (462), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 94/220 (42%), Positives = 142/220 (64%), Gaps = 4/220 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL++ED+ +G ++ L++ ++ + ++ L + +DAV+LDL LP DG Sbjct: 45 MKILVVEDERRVGQFVEKALTEQNYTARLVRTCAEARDVLAESTFDAVVLDLGLPDGDGL 104 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 D+LREWR G EPVL+L+ARDA+ +RV GL +GADDYL KPF++ EV AR+ +L+RR Sbjct: 105 DLLREWRASGFNEPVLVLSARDAVGDRVRGLNMGADDYLPKPFSVDEVVARVRSLLRRHA 164 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G + L HG V +D R T AG P+ L +E+ALLEL ++N RVL+R LI EK++ Sbjct: 165 GVKTTVLTHGPVRMDLLGRSVTCAGRPVELTSREYALLELFLQNPRRVLTRTLIAEKVWE 224 Query: 181 WDEEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTL 216 ++ +N ++V+V LR+KL + I+T+ G GY L Sbjct: 225 ASYDLETNLIDVYVRRLRQKLEAPGQPPLIKTIRGTGYQL 264 >UniRef50_B9TDT4 Two-component system sensor histidine kinase/response regulator, putative (Fragment) n=1 Tax=Ricinus communis RepID=B9TDT4_RICCO Length = 233 Score = 181 bits (459), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 91/221 (41%), Positives = 140/221 (63%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 +RILL+EDD+++GD + L ++VDWF G++G A+ S YD V+LDL LP ++G Sbjct: 10 VRILLVEDDVVLGDALVQSLVNATYAVDWFRNGKEGVLAVQSQSYDLVLLDLGLPFLNGF 69 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + ++ R Q PV++LTA D + V LGADDYL KPF L E+ AR+ A +RR + Sbjct: 70 EFIKRLRNGKQAVPVIVLTANDNSEDIVRAFDLGADDYLIKPFKLPELTARIRAQIRRVS 129 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 S+++ G + LD +R+A + GE L+L P+EF+LLE L G+++++ + E L Sbjct: 130 AHFSSKVSIGELELDTKERLAFVKGEKLSLSPREFSLLETLSNKFGKLVTKDALIESLCN 189 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSD--FIRTVHGIGYTLGEK 219 WD ++ NA+EV+VH LR+KLG I V G+GY + ++ Sbjct: 190 WDHDIGPNAIEVYVHRLRKKLGDCDVTISNVRGLGYMMEQQ 230 >UniRef50_C6QB49 Two component transcriptional regulator, winged helix family n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QB49_9RHIZ Length = 229 Score = 181 bits (459), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 97/216 (44%), Positives = 132/216 (61%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 +RILLIEDD I D + GL++ GF+V+ G G Y A ILDL LP M G Sbjct: 13 IRILLIEDDDEIADRLVAGLARAGFTVERADNGADGYAMGLDDTYAAAILDLGLPQMQGL 72 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 D+L+ WR ++ PVLIL+AR AE+V+GL GADDY+ KPF + EVAARL+AL+RR + Sbjct: 73 DVLKRWRASDRKLPVLILSARGTWAEKVDGLNAGADDYITKPFHIPEVAARLKALIRRAS 132 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G AS L HG + LD GE + L +E +L M GR++S+ + + LY Sbjct: 133 GIASPVLSHGGISLDTTSNRVCQNGESIELTARELKMLTYFMHRIGRIVSQAELVDHLYA 192 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTL 216 ++ SN +EV++ LRRKLG+D I TV G+GY + Sbjct: 193 LEDSRESNTIEVYISRLRRKLGADVITTVRGLGYRM 228 >UniRef50_UPI0001745DFF Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001745DFF Length = 231 Score = 181 bits (458), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 97/220 (44%), Positives = 139/220 (63%), Gaps = 4/220 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L IED + + L+++G +VD + +G + A YDAVILD+ LPG G Sbjct: 1 MRLLFIEDATRLRKTVARALTRLGHAVDEASSAEEGAQLAELAAYDAVILDIMLPGQSGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++L WR++ PVL+LTA D++ +RV GL GADDYL KPFA+IE+AARLEAL+RR + Sbjct: 61 ELLATWRQQQVDTPVLLLTALDSVEDRVRGLVTGADDYLIKPFAIIELAARLEALVRRRH 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G+ + +R G + +D R + G P+TL +EFALL+ L R+ G++ SR+ IE +LY+ Sbjct: 121 GKPDSRIRVGPLEIDFAARTVSRLGNPVTLTAREFALLDCLARHPGQIFSREQIEARLYS 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYTL 216 + SNAV+ V+ LRRKL I T G+GY L Sbjct: 181 ETDSPLSNAVDTAVYSLRRKLSPPGVPQLIHTRRGLGYLL 220 >UniRef50_A9IK50 Transcriptional regulatory protein n=7 Tax=Proteobacteria RepID=A9IK50_BORPD Length = 225 Score = 181 bits (458), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 97/219 (44%), Positives = 134/219 (61%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLS-KMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDG 59 M ILL+EDD ++G ++ GL+ K+G +VDW + + AL +PY AV+LD+ LPG G Sbjct: 1 MHILLVEDDAMLGMAMQAGLAQKLGATVDWARDAAEARLALAGSPYAAVLLDIGLPGESG 60 Query: 60 RDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 +LR R + PVL++TARD L+ER+ GL GADDY+ KPF L E+ ARL A++RR+ Sbjct: 61 LSVLRALRARYDATPVLLVTARDQLSERIGGLDAGADDYIVKPFQLDELLARLRAVLRRS 120 Query: 120 NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 + + L V LDP R G +TL E+ L LM GR L+R+ +E+ +Y Sbjct: 121 RNRVTPLLACAGVTLDPATRQVRRDGVEVTLSQHEYLTLLALMERPGRSLTREQLEDAVY 180 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE 218 + SN + V+VH LRRKLG + TVHG GY LGE Sbjct: 181 GGHGTIESNTIAVYVHQLRRKLGDHIVATVHGYGYRLGE 219 >UniRef50_B0KKE4 Two component transcriptional regulator, winged helix family n=22 Tax=Proteobacteria RepID=B0KKE4_PSEPG Length = 222 Score = 180 bits (457), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 96/215 (44%), Positives = 132/215 (61%), Gaps = 1/215 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LL+ED++ + D + GL + G++VDW GR S PYD +ILDL LPG+ G Sbjct: 1 MRLLLVEDNVPLADELTAGLQRQGYAVDWLADGRDAVYQGQSEPYDLIILDLGLPGLPGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++L +WR G PVLILTAR + AER+EGL+ GADDYL KPF E+ R++AL+RR Sbjct: 61 EVLAQWRAAGLATPVLILTARGSWAERIEGLKAGADDYLSKPFHPEELQLRIQALLRRAR 120 Query: 121 GQASN-ELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 G A+ +L + LD ++ + G + L EF LL M + ++LS+ + E LY Sbjct: 121 GLANQPKLEAAGLHLDESRQCVSRDGVDIQLTAAEFRLLRYFMLHPQQILSKSHLAEHLY 180 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGY 214 + E SN +EVHV+HLRRKLG I T G GY Sbjct: 181 DGETERDSNVLEVHVNHLRRKLGRSVIETRRGQGY 215 >UniRef50_A6W2Y0 Two component transcriptional regulator, winged helix family n=2 Tax=Oceanospirillales RepID=A6W2Y0_MARMS Length = 223 Score = 179 bits (455), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 94/218 (43%), Positives = 138/218 (63%), Gaps = 2/218 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL++EDD ++G+ I +S+MG +D G Q + L YD ++LDL LP M G Sbjct: 1 MRILVVEDDRILGEAISQRISRMGHGLDLAQTGLQANQMLALQEYDLMLLDLNLPDMTGN 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 IL+ R+K PV++LTARD + +R+E L LGADDY+ KP E+ AR AL+RR+ Sbjct: 61 QILQTLRKKHSNTPVIVLTARDGIKDRIELLDLGADDYMTKPVDFGELEARCRALLRRSQ 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 GQA N + +GNV L+ T+ G + LK +EF LLE+ + + GRVLS++ + E +Y Sbjct: 121 GQAQNTIEYGNVSLNLQACSVTVDGNLIDLKQREFRLLEVFISHTGRVLSKEALIEHIYN 180 Query: 181 WDEEVTSNAVEVHVHHLRRKL-GSDF-IRTVHGIGYTL 216 ++E S+ +E++V LR+ L SD IRT+ G+GY L Sbjct: 181 FNENPNSSVIEIYVARLRKSLQDSDINIRTIRGLGYLL 218 >UniRef50_B2HUW9 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=12 Tax=Acinetobacter RepID=B2HUW9_ACIBC Length = 220 Score = 179 bits (453), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 89/218 (40%), Positives = 136/218 (62%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL EDD + I++ L G+ VDW +G A+ YD ++LD LP + G Sbjct: 1 MRILLAEDDRSQAESIQSWLELDGYQVDWVERGDYALTAIEQHDYDCILLDRGLPQLAGE 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L R K + PV+ +TARD++ +RVEGL LGA+DYL KPF+L E++AR+ A +R+ Sbjct: 61 KVLTTIRHKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQLRKQT 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + L G++ LD ++ AG+ + L KEF +L LM + +++R +EE LY Sbjct: 121 LNQQSILTWGDLQLDTQAKVVLCAGKTIDLTAKEFQILRKLMVHPEHIITRDQLEEALYA 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE 218 W EE+ SNA+EV ++ LR+K+GS I+T+ G+GY +G+ Sbjct: 181 WGEEIESNAIEVFIYQLRKKIGSSSIKTIRGLGYRMGD 218 >UniRef50_Q20YF2 Two component transcriptional regulator, winged helix family n=24 Tax=Proteobacteria RepID=Q20YF2_RHOPB Length = 221 Score = 179 bits (453), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 99/218 (45%), Positives = 134/218 (61%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILLIEDD + I L + G++VD G G S YDA ILDL LPG+DG Sbjct: 1 MRILLIEDDTRLARQIAEALERAGYTVDRSADGEDGWFMGDSGVYDAAILDLGLPGLDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +LR WR+ + PVLILTAR + E+V GLR GADDYL KPF + E+ AR+EAL+RR + Sbjct: 61 SVLRRWRDAKRAMPVLILTARASWREKVTGLREGADDYLTKPFEIEELLARIEALIRRAS 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G A+ E+ + LDP + + G PL L E+ L LM + +V+S+ + E +Y Sbjct: 121 GHATAEISVAGLRLDPSTQRISRDGAPLDLTALEYRALAYLMMHPAKVVSKTELTEHIYG 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE 218 D++ SN +EV V+ LR+K+G+D IRT G GY L + Sbjct: 181 QDDDRDSNVIEVLVNRLRKKIGADAIRTRRGQGYQLAD 218 >UniRef50_Q2IUG0 Two component transcriptional regulator, winged helix family n=207 Tax=Bacteria RepID=Q2IUG0_RHOP2 Length = 257 Score = 178 bits (451), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 96/216 (44%), Positives = 134/216 (62%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 +R+L++EDD + + T L+ G+ VD G +G + PYDAV+LD+ LP MDG Sbjct: 29 VRLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGI 88 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L WR + PVLILTARD +++V+G GADDY+ KPF L EV AR+ AL+RR+ Sbjct: 89 SVLEAWRRNARAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSA 148 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G A +EL G V+LD ++ G P+ L E+ LL LM ++GRV+SR + E LY Sbjct: 149 GHAQSELTCGPVVLDTRTGRVSVRGHPVKLTSHEYRLLAYLMHHSGRVVSRTELVEHLYD 208 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTL 216 D + SN +EV V +R+KL D I+TV G+GY L Sbjct: 209 QDFDRDSNTIEVFVGRIRKKLDVDIIQTVRGLGYLL 244 >UniRef50_C0VPI8 Two-component response regulator n=4 Tax=Acinetobacter RepID=C0VPI8_9GAMM Length = 219 Score = 177 bits (449), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 87/219 (39%), Positives = 135/219 (61%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL EDD + IK L G+SVDW +G A+ YD V+LD LP G Sbjct: 1 MRILLAEDDASQAESIKDWLEMDGYSVDWVERGDHAILAVEQHQYDCVLLDRGLPKASGD 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 IL+ R++ + PV+ +TA+D + +RVEGL LGA+DYL KPF L E++AR+ + +R+ Sbjct: 61 QILKSIRQRNLKTPVIFITAKDHIHDRVEGLDLGANDYLVKPFNLEELSARVRSQLRQHQ 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 A L+ ++ LDP + + A + + L KEF +L LM+ + +R+ +EE LY Sbjct: 121 VDAGQYLKFADLKLDPQAKTLSQAEQTVNLTAKEFQILYKLMQKPDHIFTREQLEESLYA 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK 219 W +E+ SNA+EV ++ +R+K+G +I+TV G+GY + ++ Sbjct: 181 WGDEIESNAIEVFIYQIRKKIGGQYIKTVRGLGYRMHQE 219 >UniRef50_A6W3P8 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=A6W3P8_MARMS Length = 222 Score = 177 bits (449), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 94/216 (43%), Positives = 133/216 (61%), Gaps = 2/216 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LLIED+ + D I+ +G +DW + + +L +D +ILD+ LPG G Sbjct: 1 MRMLLIEDNESLADSIRVYFKNLGHPIDWIGSVEKAEASLSFDDFDLLILDINLPGKSGF 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L+ R KG R PVL+LTAR + +RV L GADDYL KPF E+AAR AL RR Sbjct: 61 QLLQSLRSKGNRIPVLVLTARTEVDDRVSSLDFGADDYLAKPFDFRELAARCRALYRRER 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G ASNE++ GN++ D A + G L L+P+E LLEL ++N RVL++ I +LY+ Sbjct: 121 GGASNEIQCGNLVYDLAAHSAKVNGITLDLRPRELQLLELFLKNLDRVLTKDDISNRLYS 180 Query: 181 WDEEVTSNAVEVHVHHLRRKL-GSDF-IRTVHGIGY 214 +DE T NA+E + LR++L GS I+T+ G+GY Sbjct: 181 YDEAYTPNAIEQTLTRLRKQLDGSTLIIKTIRGLGY 216 >UniRef50_Q6FA81 Putative two-component response regulator n=1 Tax=Acinetobacter sp. ADP1 RepID=Q6FA81_ACIAD Length = 218 Score = 177 bits (449), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 86/218 (39%), Positives = 138/218 (63%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL+ EDD+ + IK+ L G+ VDW +G A+ YD ++LD LP G Sbjct: 1 MRILIAEDDISQAESIKSWLELDGYVVDWVDRGDYAIAAIKQHDYDCILLDRGLPKSSGD 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L R+ PV+++TARD++++RV GL LGA+DYL KPF+L E++AR+ + +R Sbjct: 61 QVLLTLRKHQSMTPVIMITARDSISDRVTGLDLGANDYLVKPFSLEELSARIRSHIRSMQ 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 Q + L N+ L+ + L+GE + L KEF +L +M+N RV++R+ +E LY Sbjct: 121 QQVDSLLCWKNIELNTQDKWVKLSGELVELTAKEFKVLHKMMQNPERVVTREQLESTLYA 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE 218 W +E+ SNA+EV ++ LR+K+G+++I+T+ G+GY + E Sbjct: 181 WGDEIESNAIEVFIYQLRKKIGTNYIKTIRGLGYRMSE 218 >UniRef50_B8IU63 Two component transcriptional regulator, winged helix family n=20 Tax=Proteobacteria RepID=B8IU63_METNO Length = 225 Score = 177 bits (448), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 98/220 (44%), Positives = 135/220 (61%), Gaps = 4/220 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+ED +G+ I L +G +VDW G G L PYD VILD+ LPG+DG Sbjct: 1 MRILLVEDTQDVGEAIVARLRTLGHAVDWERDGAMGDAVLEVQPYDLVILDVNLPGLDGF 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 IL+ R + R PVL+LTAR + +RV L LGADDYL KPF E+ AR+ AL+RR + Sbjct: 61 AILKRMRARRGRTPVLVLTARSEVDDRVGALDLGADDYLVKPFDFRELEARVRALLRRHS 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G A N + GN+ LD R A++ G+PL L +E+ L+E+L GR+ + + ++L T Sbjct: 121 GHADNAIACGNLSLDRAARSASVGGQPLDLTRREWTLIEILAARPGRIFGKAELLDRLST 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTL 216 ++EE + NA+E V LRRKL IRT+ G+GY + Sbjct: 181 FEEEPSENALEQIVARLRRKLAQAGAEPEIRTLRGLGYQV 220 >UniRef50_B0TXH6 Response regulator receiver protein n=18 Tax=Francisella RepID=B0TXH6_FRAP2 Length = 228 Score = 176 bits (447), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 88/219 (40%), Positives = 143/219 (65%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LL EDD+ +G+G+ L K G V+ + G + + S YD V+LD+ +P G Sbjct: 1 MRLLLAEDDLNLGEGLLEALQKEGLIVNLVSDGEAAQTFIESGLYDIVVLDIGMPIKTGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++LR R KG + P+++LTARD L +R++GL LGADDYL KPF L E+ AR++A+ RR + Sbjct: 61 EVLRNVRNKGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRID 120 Query: 121 GQA----SNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEE 176 ++ E++ G+ +P T G + + KE ALL +L++NAGRV+ + + E Sbjct: 121 TRSGKSTKEEIKFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLLE 180 Query: 177 KLYTWDEEVTSNAVEVHVHHLRRKLG-SDFIRTVHGIGY 214 ++Y+ D+E+ +N +EVH+H+LR+K+ +FI+T+ G+GY Sbjct: 181 EVYSTDKEMDTNTLEVHMHNLRKKINIPNFIQTIRGVGY 219 >UniRef50_Q480M1 Response regulator n=1 Tax=Colwellia psychrerythraea 34H RepID=Q480M1_COLP3 Length = 243 Score = 176 bits (447), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 100/239 (41%), Positives = 136/239 (56%), Gaps = 22/239 (9%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD + + ++ L + GF VD ++G+ AL +D VILDL LP +DG Sbjct: 1 MRILLVEDDQGLAEALQQSLVREGFVVDHLSRGKLALTALAVPSHDMVILDLGLPDIDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L+E R K PV+ILTARD++ +V+GL GADDYL KPF + E+ ARL + RR Sbjct: 61 LVLKEIRAKKNDLPVIILTARDSIDSKVKGLDYGADDYLAKPFDMQELLARLRVIERRLG 120 Query: 121 GQASNELRHGNVMLDP----------------------GKRIATLAGEPLTLKPKEFALL 158 +S+ + V LD G+ A + KEF +L Sbjct: 121 TASSSMITIDRVSLDTKSHKVYLLQCNQVNNEQNHEQEGEINAQNGASEVHFSKKEFMVL 180 Query: 159 ELLMRNAGRVLSRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLG 217 + LM NAGR+ SR+ IE KLY W EEV SNAVEVH+H LR+ L + FI+ V G+GY + Sbjct: 181 KALMENAGRIQSREQIESKLYQWGEEVLSNAVEVHIHKLRKNLPNKFIQNVRGVGYIIN 239 >UniRef50_A4SHT1 Two-component system response regulator n=10 Tax=Proteobacteria RepID=A4SHT1_AERS4 Length = 218 Score = 176 bits (445), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 95/218 (43%), Positives = 130/218 (59%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL++ED+ + + L GF D G + + PYDA+ILDL LPG DG Sbjct: 1 MRILIVEDEKTLAGQLAEQLRLSGFVTDLCHDGNEAGFLGETEPYDAIILDLGLPGRDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L+EWR KG PVL+LTAR L E++EGL GADDYL KPF + E+ AR++AL+RR Sbjct: 61 SVLKEWRSKGIDTPVLVLTARGQLHEKIEGLNAGADDYLTKPFQVAELVARVQALVRRAA 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G AS+ L G V LD G P+ L EF +L LM++ G+V+SR + + +Y Sbjct: 121 GNASSILEIGGVRLDMAASQVWYEGTPIKLTAHEFRVLGYLMQHRGKVVSRSELIDHIYA 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE 218 D + SN VEV + +R+K +D I TV G+GY + E Sbjct: 181 QDFDRDSNTVEVFIGRIRKKTHADLIETVRGLGYRINE 218 >UniRef50_B5VWD3 Multi-component transcriptional regulator, winged helix family n=2 Tax=Arthrospira RepID=B5VWD3_SPIMA Length = 628 Score = 175 bits (444), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 91/224 (40%), Positives = 140/224 (62%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD+ + D + L+ + VD G+QG E + S+ YD V+LD+ LP +DG Sbjct: 1 MRILLVEDDLHLADALVAMLTSQKYQVDLVNDGQQGWEYIQSSSYDLVLLDIELPLLDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + + R + P+L+LTAR+ ++V+GL GADDY+ KP + E++AR+ AL+RR++ Sbjct: 61 SLCHQLRSHNFQVPILLLTARNNQQDKVKGLDAGADDYMVKPLDIAELSARIRALLRRSS 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 S+ L + ++LD + G+PL L PKE+ LLELLM N R S I +KL+T Sbjct: 121 EATSSVLTYEKMVLDTSTCDVSYNGKPLKLTPKEYGLLELLMGNRQRTFSIDKILDKLWT 180 Query: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGEK 219 +D+ ++N V H+ LR+KL G++FI TV+G+GY L + Sbjct: 181 FDDPPSANTVRAHIKGLRQKLKAAGAGAEFIETVYGLGYRLNQN 224 Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 2/125 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 R+++++DD + I+ L G RQ + L S+ D ++LD+ +P ++G + Sbjct: 497 RVMIVDDDPQMLAAIQGLLQPWGIQTITLDDPRQFWKTLESSHPDLLVLDIEMPHLNGIE 556 Query: 62 ILREWREKGQRE--PVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 + + R + PVL +TA+ R + + GADDYL KPF E+A R+ ++RT Sbjct: 557 LCQIVRNDPRWRGLPVLFVTAQTDRQIREQVFQAGADDYLTKPFTGSELATRIVNRLKRT 616 Query: 120 NGQAS 124 A+ Sbjct: 617 QNLAT 621 >UniRef50_D2QX61 Two component transcriptional regulator, winged helix family n=3 Tax=Planctomycetaceae RepID=D2QX61_9PLAN Length = 223 Score = 175 bits (444), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 96/220 (43%), Positives = 140/220 (63%), Gaps = 4/220 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M++L+IEDD ++G ++ GLS+ G W G+ G E + +DA++LD+ LP G Sbjct: 1 MKLLVIEDDPVLGKALERGLSEAGHFCQWERTGKSGLEQASTQQFDALVLDVMLPDTTGM 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +++R+ R G PVL+LTA ++ +RV GL GADDYL KPFA E+ ARL+A+ RRT Sbjct: 61 EVVRKIRHDGIGTPVLMLTALGSVDDRVAGLNSGADDYLVKPFAFPELLARLDAISRRTK 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + S++L+ G ++LD R T L+L P EF+LLE LMR AG+V++RK++ E L+ Sbjct: 121 DRPSSQLKVGPLVLDLTNRKVTRNDSELSLTPTEFSLLEFLMRYAGQVVTRKMLCEHLWE 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTL 216 D E +N VEVH++ LR K+ F I+TV G GY L Sbjct: 181 SDWEGVTNVVEVHINRLRGKIDRGFSEPLIQTVRGRGYVL 220 >UniRef50_Q1H1R2 Two component transcriptional regulator, winged helix family n=2 Tax=Betaproteobacteria RepID=Q1H1R2_METFK Length = 223 Score = 174 bits (442), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 93/220 (42%), Positives = 138/220 (62%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL++EDD ++ +G LSK G++VD G + + + YD ++LD+ LPGMDG Sbjct: 1 MRILVVEDDAILAEGTCESLSKAGYAVDLAETGTKANAMMEAGHYDMLLLDIGLPGMDGF 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++LR R+ PVLI++ARD + R+ GL LGADD++ KPF L E+ AR AL+RR Sbjct: 61 EVLRRLRKHNNSIPVLIISARDDVDFRIYGLDLGADDFMLKPFVLAELHARTRALLRRHT 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 N L G +M+D G + A++ GEP+ L +E+ +L L+RN G+V+ ++ I E L Sbjct: 121 LSERNTLACGKLMVDLGAQRASVNGEPIELSIREWDVLVYLLRNLGKVVRKEAIIETLCD 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSD--FIRTVHGIGYTLGE 218 W +++ NAVEV++ LR KL + IRTV G GY L + Sbjct: 181 WKTDISLNAVEVYISRLRSKLDAHGIHIRTVRGFGYLLDD 220 >UniRef50_B2UJM1 Two component transcriptional regulator, winged helix family n=5 Tax=Ralstonia RepID=B2UJM1_RALPJ Length = 221 Score = 174 bits (440), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 87/215 (40%), Positives = 143/215 (66%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 ILLIEDD+ +G + L + G++ W + ++ + + ++A++LDL LP +G Sbjct: 4 ILLIEDDLPLGTALARALRQAGYNATWVRRLVDAQKWITTNTFEAIVLDLGLPDGEGHVF 63 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQ 122 L E R + PV+I +ARDAL+ER++GL GADD+L KPF + E+ ARL A++RR GQ Sbjct: 64 LEELRAAHRDVPVIIASARDALSERLKGLDAGADDFLVKPFPVDELIARLRAVLRRHAGQ 123 Query: 123 ASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTWD 182 ++N+ GN++++P ++ T G+ + L P+E+ LL L+R A R + R+ + + LY Sbjct: 124 STNQWSVGNLVVEPSQKRVTQDGQVIELTPREYQLLLELVRRAHRWVPRETLMDALYREG 183 Query: 183 EEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLG 217 + V++NA+EV +HHLRRKLG++ I+T+ G+GY +G Sbjct: 184 DSVSANALEVVIHHLRRKLGNETIQTIRGVGYMIG 218 >UniRef50_B4WPA6 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WPA6_9SYNE Length = 685 Score = 174 bits (440), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 97/223 (43%), Positives = 137/223 (61%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILLIEDD ++ + L + ++VD GR G E SA YD +++D+ LP +DG Sbjct: 1 MRILLIEDDEVLTSALVESLQQQRYTVDTADDGRFGLEYAESASYDLLLVDVGLPRLDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + RE R++ P+L++TA+DA E++ GL GADDYL KP + E+ ARL AL+RR Sbjct: 61 SLCRELRDRNYTTPILLMTAKDAADEKIRGLDAGADDYLTKPLDINELHARLRALLRRGE 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 ++ L G + LDP T A PL L PKE++LLEL +RN RV SR I E L+T Sbjct: 121 VSPTSILEMGQLHLDPVSCEVTYADAPLKLTPKEYSLLELFLRNPSRVFSRSHIIEHLWT 180 Query: 181 WDEEVTSNAVEVHVHHLRRKL---GSD-FIRTVHGIGYTLGEK 219 +D+ ++V+ HV LRR+L G+D +I V+G+GY L K Sbjct: 181 FDDPPLEDSVKAHVKGLRRRLKQAGADGWIENVYGMGYKLSPK 223 Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 8/122 (6%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 +L ++DD ++ + L GFS+ + + L D +ILD+ +PG DG ++ Sbjct: 403 LLAVDDDPILLGTLSPLLEPWGFSITTLADSTKFWQTLTKVDPDLLILDIEMPGPDGIEL 462 Query: 63 LREWREKG------QREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALM 116 R Q P+L LTAR+ A V GADDY+ KP E+ R+ + Sbjct: 463 CHAVRNDPRDGGHWQSLPILFLTARENAAAEVF--AAGADDYVVKPIVGPELITRINNRL 520 Query: 117 RR 118 R Sbjct: 521 ER 522 >UniRef50_Q2W278 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=11 Tax=Bacteria RepID=Q2W278_MAGSA Length = 225 Score = 173 bits (438), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 96/222 (43%), Positives = 134/222 (60%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+ED+ + + I GL GF D F A SA Y A ILDL LP DG Sbjct: 1 MRILLVEDNDRLAEFISAGLKSAGFVPDVFGTVADATAAFESAAYQAAILDLGLPDGDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 DI+R R K P+++LTARD +++RV GL GADDYL KPFA+ E+ ARL A++RR Sbjct: 61 DIVRAQRAKAAPCPIMVLTARDRVSDRVSGLNAGADDYLLKPFAMEELIARLRAILRRPG 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 S EL GN+ D R + G+ + + +E +LE L+R +G+V+S++ +EE LY Sbjct: 121 AALSVELSLGNLTFDTAGREVRVDGQLVAMPRREMEMLEHLLRRSGKVVSKRSLEEGLYG 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYTLGE 218 +D++VT N+VEV V LR++L + T+ GIGY L + Sbjct: 181 FDDDVTPNSVEVLVSRLRKRLQQTGAGVTVHTLRGIGYMLAD 222 >UniRef50_C8WRL2 Two component transcriptional regulator, winged helix family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRL2_ALIAD Length = 231 Score = 171 bits (433), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 98/219 (44%), Positives = 133/219 (60%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+ED++ + +K L + ++VD G G + + YD ILD+ LP M G Sbjct: 1 MRILLVEDEVRLASALKQLLKEHQYAVDVAHDGETGCDLALTDSYDLAILDIMLPKMSGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 DILR R+ G + PVL+LTA+D + +RV GL GADDYL KPF E+ AR+ AL RRT Sbjct: 61 DILRAMRKAGLQTPVLLLTAKDTVEDRVTGLDAGADDYLVKPFDNKELLARVRALSRRTG 120 Query: 121 GQASNE-LRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 A + + G LD R T GEPL L KEF LLEL MRN +VLS+++I ++++ Sbjct: 121 QIAGGDAIEAGPFRLDLNTRTVTRNGEPLALTAKEFQLLELFMRNPNKVLSKEVILDRVW 180 Query: 180 TWDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGY 214 D +V NAVE +VH LR+K+ +I TV G+GY Sbjct: 181 GPDADVIGNAVENYVHFLRKKIDEPDLPSYITTVRGVGY 219 >UniRef50_C6NUN9 Two component transcriptional regulator, winged helix family n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NUN9_9GAMM Length = 223 Score = 171 bits (433), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 98/217 (45%), Positives = 135/217 (62%), Gaps = 3/217 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LLIEDD+++G+ + L + G +VDW R + AL ++ ++LDL LP +G Sbjct: 1 MRLLLIEDDVMLGEALVIALREGGHAVDWLRSARTARTALNPPEHEVLLLDLGLPDGEGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 D+LRE RE+G PV+IL+ARDAL R+EGL GADDYL KPFA E+ ARL L RR Sbjct: 61 DLLRELRERGSSLPVIILSARDALETRIEGLDSGADDYLVKPFASSELLARLRVLQRRQG 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEP---LTLKPKEFALLELLMRNAGRVLSRKLIEEK 177 G L +G + +DP A G+ L +EFALL L+ G + SR+ +E + Sbjct: 121 GSGQAILSNGKIHMDPASFEAWREGQEEQRQRLGQREFALLSTLLSRPGVIFSRQELETR 180 Query: 178 LYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGY 214 LY W EEV SN+++ +H LRRKLGSD I+ + G G+ Sbjct: 181 LYPWGEEVESNSIDFLIHSLRRKLGSDAIQNIRGAGW 217 >UniRef50_Q89NT7 Two-component response regulator n=1 Tax=Bradyrhizobium japonicum RepID=Q89NT7_BRAJA Length = 224 Score = 171 bits (432), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 92/223 (41%), Positives = 137/223 (61%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L++ED+ + + GLS G+ D + + +EA+ S Y A+ILDL LP DG Sbjct: 1 MRLLIVEDNAELSRLVAAGLSAAGYESDIVSSAAEAREAVGSVSYAAMILDLGLPDGDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +LRE R + + PVL+LTAR L +RV GLR GADDYL KPFA+ E+ ARLEA++RR Sbjct: 61 SVLRELRRQMEPLPVLVLTARGGLQDRVNGLRSGADDYLAKPFAMEELVARLEAILRRPG 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 LR N++ D R + +P + +E ++LE+L+R GRV+ +K +E+ ++ Sbjct: 121 QLLGRSLRLANLVYDTESRQIFIDDQPRIISAREASVLEILLRRQGRVVPKKNVEDHIFG 180 Query: 181 WDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTLGEK 219 + EV SNAVEV+V LR++L I T+ G+GY + E+ Sbjct: 181 LEGEVASNAVEVYVSRLRKQLTEHGAKVVIHTIRGVGYLMAEE 223 >UniRef50_Q026B5 Two component heavy metal response transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q026B5_SOLUE Length = 238 Score = 171 bits (432), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 98/221 (44%), Positives = 137/221 (61%), Gaps = 7/221 (3%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL++ED+ I D + GL G++VD G + ++ YD V+LD LP MDG Sbjct: 1 MRILVVEDEKRIADFLCRGLEGAGYAVDAALTGGAALDLIHDTDYDLVVLDRMLPDMDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L + R + PVLIL+AR AL +RV+GL GADDYL KPFA +E+ AR+ AL+RR Sbjct: 61 QVLEKMRSRKAGPPVLILSARGALDDRVKGLEQGADDYLVKPFAFVELLARVRALLRR-- 118 Query: 121 GQASNE-LRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 GQ + E L+ ++ LD +R T E + L PKEF +LE +MRN GR LSR +I E ++ Sbjct: 119 GQPTPERLQVSDLALDCIRRKVTRGAETIDLAPKEFGILEYMMRNKGRPLSRTMIVEHVW 178 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTL 216 D + +N V+V++ HLR K+ F I+TV GIGY + Sbjct: 179 DMDYDGLTNIVDVYIRHLRSKIDDRFQQKLIQTVRGIGYMI 219 >UniRef50_Q8GP20 Swarming motility regulation protein rssB n=14 Tax=Enterobacteriaceae RepID=RSSB_SERMA Length = 219 Score = 171 bits (432), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 94/216 (43%), Positives = 130/216 (60%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M ILL+EDD+ +G + L GF++ W + L S +D ++LDLTLP DG Sbjct: 1 MNILLVEDDLQLGKALCRALELAGFNLCWVRLIADAENKLSSGGFDLMLLDLTLPDGDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 L WR GQ P++ILTARD + V L GA+D+L KPFAL E+ +R++A+ RR Sbjct: 61 QKLIAWRAAGQNIPIIILTARDRIESLVNSLDSGANDFLAKPFALPELISRVKAVNRRMA 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G AS G + LDP L E L L KE+ LL LMR AG V+ + ++E++L+ Sbjct: 121 GFASQTWSLGALYLDPVNHQVMLDNELLMLSKKEYHLLHELMRCAGTVVRKAVLEQRLFG 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTL 216 + V SN++EVH+H+LRRK+G D + TV GIGY L Sbjct: 181 HGDSVESNSLEVHMHNLRRKIGKDRVITVRGIGYLL 216 >UniRef50_C5CE19 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CE19_KOSOT Length = 228 Score = 171 bits (432), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 98/221 (44%), Positives = 137/221 (61%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL++ED+ + + IK L GF VD G +G + S YD +ILD+ LPGM G Sbjct: 1 MKILVVEDNKKLAENIKKYLELEGFIVDLAYDGNEGLDLALSYNYDCIILDIILPGMSGI 60 Query: 61 DILREWR-EKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 +I R R E+ + P+L+LTA ++ RVEGL +GADDY+ KPF L E+ AR+ AL+RR Sbjct: 61 EICRFLRDEEKSQVPILMLTALGSVENRVEGLNVGADDYMPKPFDLRELVARVRALIRRN 120 Query: 120 NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 L++G+++++ R + GEPL L KEF+LLEL MRN G V SR+ I +KL+ Sbjct: 121 QVVRQETLKYGDLVMNLQTREVSCKGEPLNLSSKEFSLLELFMRNPGVVFSREQILDKLW 180 Query: 180 TWDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYTL 216 E SN V+V+V +LR+KL + I TVH IGY L Sbjct: 181 ESGFEPRSNIVDVYVLYLRKKLKPFGYDEKIETVHNIGYRL 221 >UniRef50_A4JSE5 Sensor protein n=21 Tax=Proteobacteria RepID=A4JSE5_BURVG Length = 686 Score = 170 bits (431), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 89/180 (49%), Positives = 120/180 (66%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD+L+GDGI+ GL + GF VDW G + L + + A +LDL LP +DG Sbjct: 1 MRILLVEDDVLLGDGIRAGLRQQGFQVDWVRDGDAAQRELRAHVHAAAVLDLGLPLVDGM 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 D+L+ R G P+L+LTARDA+ +R+ L GADDY+ KP L E+ ARL AL+RR + Sbjct: 61 DVLQRIRRDGIALPILVLTARDAVPDRIRALDAGADDYVIKPIDLYELGARLRALVRRAH 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G+ + LR +V L+P R A AG + L +EF LL +LM NAGRVLSR+ IE+ LY+ Sbjct: 121 GRPTERLRAHDVELEPASRTARRAGVAVALSTREFDLLHILMLNAGRVLSREQIEQYLYS 180 >UniRef50_A6T2K6 Two-component response regulator n=20 Tax=Proteobacteria RepID=A6T2K6_JANMA Length = 239 Score = 170 bits (430), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 87/217 (40%), Positives = 138/217 (63%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M++L++EDD LI G+ GL G T ++A+Y+A +D ++LDL LP DG Sbjct: 20 MQVLVVEDDELIASGLAAGLQAHGMVAVCVTTAVSAEQAIYAADFDVMVLDLGLPDQDGL 79 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L+E R + PV++LTARDA+ R+ GL+ GADDY+ KPF L E+AAR+ A++RR+ Sbjct: 80 TLLKETRSRKLSLPVIVLTARDAIEYRIAGLQSGADDYVLKPFDLGELAARIHAVVRRSK 139 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G+A+ E+ G + LDP L + + L +EF +L L AG L+ + ++++ Sbjct: 140 GRATQEITAGPLRLDPQYGQVWLNEKLIALSRREFDILIHLANAAGHWLAPSTLRDRVFG 199 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLG 217 D +++SNA+ VH+H++RRKLG++ I T G+G+ LG Sbjct: 200 EDIQISSNALNVHIHNIRRKLGAEAIETSRGLGFRLG 236 >UniRef50_Q20WN2 Two component transcriptional regulator, winged helix family n=4 Tax=Rhizobiales RepID=Q20WN2_RHOPB Length = 221 Score = 169 bits (429), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 93/217 (42%), Positives = 137/217 (63%), Gaps = 6/217 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALY---SAPYDAVILDLTLPGM 57 MR+L++EDD I ++ GL G+ V+ R G+EA + + Y A++LDL LPGM Sbjct: 1 MRVLVVEDDRRIAADLERGLQAAGYVVETV---RDGEEAWFRGDTEDYAAIVLDLGLPGM 57 Query: 58 DGRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMR 117 DG +L+ WR +R PVLILTAR + AERV+G+ GADDYL KPF + E+ ARL +++R Sbjct: 58 DGLAVLKRWRGNDRRTPVLILTARGSWAERVDGIDAGADDYLPKPFRMEELLARLRSIVR 117 Query: 118 RTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEK 177 R+ GQA + + G+V LD + + G P+ L P E+ L+ L + GRV+S+ + E Sbjct: 118 RSAGQACSVISVGDVTLDERQMKVDVGGVPVNLSPLEYRLIAFLFLHRGRVVSQAELSEN 177 Query: 178 LYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGY 214 +Y ++ SNA+EV + +R+KLGS+ I T G GY Sbjct: 178 IYGNEDAHDSNAIEVLIGRVRKKLGSELIETRRGFGY 214 >UniRef50_B9MHH2 Two component transcriptional regulator, winged helix family n=2 Tax=Comamonadaceae RepID=B9MHH2_DIAST Length = 225 Score = 169 bits (427), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 97/219 (44%), Positives = 136/219 (62%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M IL++ED+ L+ GI+ GL GF+ D Q + + S +DA +LDL LP DG Sbjct: 1 MHILIVEDNALVASGIQAGLELHGFTSDTAGSVAQAQAHMTSRQFDACVLDLGLPDGDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +LR+WR KG PVLILTAR + ++V G + G DDYL KPF L E+ RL AL+RR Sbjct: 61 SLLRQWRAKGLALPVLILTARSTIEDKVAGFQTGTDDYLTKPFDLQELVLRLRALLRRAG 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G+ S+ L G+ ++ T G + + +E+ALL+ L++ GRVLS + + LY Sbjct: 121 GRTSDLLALGDCQVNMATGEVTRNGVAIDISRREWALLQALLQAHGRVLSAAQLHDSLYG 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK 219 D++V SN V VHVHHLR+KLG+D I TV G+G+ LG + Sbjct: 181 LDQDVGSNTVNVHVHHLRKKLGADVIDTVRGLGFRLGAR 219 >UniRef50_Q2L1Q6 Two-component response regulator n=3 Tax=Proteobacteria RepID=Q2L1Q6_BORA1 Length = 223 Score = 168 bits (426), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 94/218 (43%), Positives = 138/218 (63%), Gaps = 3/218 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+ED+ +GD +++ L G SV W G + + P+DA++LD++LPG DG Sbjct: 1 MRILLVEDNPDLGDAVESKLRNAGHSVQWVRDGLAAVQWGQAEPWDALLLDISLPGKDGD 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +LRE R G PVL++TAR + ++V+ L LGADDYL KPF L E+ ARL ALMRR Sbjct: 61 AVLRELRAAGMESPVLVMTARAEIEDKVDMLDLGADDYLVKPFDLRELEARLRALMRRPG 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 GQ S+ GN+ LD R + G+PL L +EF LLE+L+ G+ ++++ + +++ Sbjct: 121 GQTSSVAMFGNLTLDSANRGVWVNGQPLELGRREFRLLEILLTRQGQTVAKERLMAQVFD 180 Query: 181 WDEEVTSNAVEVHVHHLRRKL--GSDFIRTVHGIGYTL 216 D +V+ NA+E+ + LRRKL S I TV G+GY + Sbjct: 181 AD-DVSLNALELLISRLRRKLADASVDIVTVRGVGYQV 217 >UniRef50_C8PY86 DNA-binding response regulator n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PY86_9GAMM Length = 222 Score = 168 bits (426), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 82/217 (37%), Positives = 128/217 (58%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LL+EDD+ I D + L + ++VDW GR+ L YD ++LDL LP +DG Sbjct: 1 MRVLLVEDDVFIADSLIDSLEEEAYAVDWAKDGREAILTLKVEAYDVILLDLGLPEIDGM 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L R PVL+LTARD + +RV+GL GADDY+ KPFA+ E+ AR+ L+RR+ Sbjct: 61 SVLETLRSAKIDTPVLVLTARDQIKDRVKGLDAGADDYMTKPFAMSELLARMRVLVRRSQ 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G + N L+ G++ LD + G + + KE+ LL M +V S+ +E +Y Sbjct: 121 GNSHNTLQVGDLTLDINVKRLKRDGIEIDITAKEYMLLTTFMNAPDKVFSKSELENSIYN 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLG 217 W+ + SNA+E ++ LR+K+G I+ + G+G+ + Sbjct: 181 WEAGIESNAIEFLIYGLRKKIGQKRIKNIRGLGWYIS 217 >UniRef50_A0RG02 Two-component response regulator n=92 Tax=Bacteria RepID=A0RG02_BACAH Length = 236 Score = 168 bits (426), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 87/220 (39%), Positives = 134/220 (60%), Gaps = 4/220 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L++ED+ + + + L+ +SVD G + + A YD ++LD+ +PG++G Sbjct: 13 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 72 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L++ R PVL+LTA+D + +RV+GL LGADDYL KPFA E+ AR+ LMRR Sbjct: 73 QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 132 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G SN ++++D T + +TL KEFA+LE ++RN VL+R IE+ ++ Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTL 216 +D E SN ++V+V +LR+K+ S F I TV G GY L Sbjct: 193 YDYEGGSNIIDVYVRYLRKKVDSQFETKLIHTVRGTGYVL 232 >UniRef50_P22104 Transcriptional regulatory protein tctD n=145 Tax=Proteobacteria RepID=TCTD_SALTY Length = 224 Score = 167 bits (423), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 94/219 (42%), Positives = 144/219 (65%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LL ED+ + ++ L + GF+VD G L+S Y +LD+ +PGMDG Sbjct: 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSEMYALAVLDINMPGMDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++++ R++GQ PVL+LTAR A+A+RV+GL +GADDYL KPF L E+ ARL AL+RR+ Sbjct: 61 EVVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRSA 120 Query: 121 GQASNELRHGNVML-DPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 GQ + G ++ D G + L G+PL L P+E ALL +LM R +SR+ + E+++ Sbjct: 121 GQVHEVQQLGELIFHDEGYFL--LQGQPLALTPREQALLTVLMYRRTRPVSRQQLFEQVF 178 Query: 180 TWDEEVTSNAVEVHVHHLRRKL-GSDF-IRTVHGIGYTL 216 + ++EV+ ++E+++H LR+KL GSD I T+ G+GY L Sbjct: 179 SLNDEVSPESIELYIHRLRKKLQGSDVRITTLRGLGYVL 217 >UniRef50_A3SUZ3 Two component transcriptional regulator, winged helix family protein n=3 Tax=Rhodobacteraceae RepID=A3SUZ3_9RHOB Length = 218 Score = 167 bits (422), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 88/216 (40%), Positives = 129/216 (59%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILLIED+ + +K L V+WF + AL + YD V+LDL LP DG Sbjct: 1 MRILLIEDEKALARPLKEHLEADRHIVEWFCTLDEADAALRTLSYDVVLLDLQLPDGDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + L + R K R P+LILTARD +++R+EGL GADDY+ KPF L EV AR+ + RR+ Sbjct: 61 NFLSKLRAKAIRTPILILTARDKVSDRIEGLNRGADDYVIKPFDLDEVKARIHTVCRRSA 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 Q + ++ +V+++ A +P+ L KE+ + E L+R +++ ++ +E +Y Sbjct: 121 NQFAQTVQLHDVVVNLSDHTVMRAEQPVRLTAKEWGVFETLLRRKPQIVPKESLEAAIYD 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTL 216 + EEV SNA+E H+ LR KLG D I T G+GY L Sbjct: 181 YGEEVESNAIEAHISRLRTKLGKDLIATHRGLGYAL 216 >UniRef50_B5JD22 Response regulator receiver domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JD22_9BACT Length = 239 Score = 166 bits (421), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 93/220 (42%), Positives = 139/220 (63%), Gaps = 4/220 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M++LL+ED+ I D + GL + G+ V+ G G S YD ++LD+ LPG DG Sbjct: 17 MKVLLVEDEKKISDFVVRGLKEQGYVVELAEDGEDGYIHATSQSYDVIVLDIMLPGRDGL 76 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 IL+ R+ G PV+++TAR L ER+EGL LGADDYL KPF L E+ AR++AL RR++ Sbjct: 77 SILKSLRKSGNTVPVILVTARGELDERLEGLNLGADDYLTKPFYLDELIARIQALHRRSS 136 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G++ + ++ G+++++ R GE + L +EF LLE LMR+ GRVL+R I E ++ Sbjct: 137 GKSLSMMQVGDLVVNLSTREVRRDGELVELTTREFNLLEYLMRSPGRVLTRTQILEHVWG 196 Query: 181 WDEEVTSNAVEVHVHHLRRKL--GSD--FIRTVHGIGYTL 216 +D + ++N V+V V LR+K+ G D I TV G GY + Sbjct: 197 YDFDPSTNVVDVCVQRLRKKVDAGHDVHLIETVRGAGYRM 236 >UniRef50_A4JRJ8 Two component transcriptional regulator, winged helix family n=5 Tax=Proteobacteria RepID=A4JRJ8_BURVG Length = 241 Score = 166 bits (420), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 93/220 (42%), Positives = 125/220 (56%), Gaps = 4/220 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LL+ED+ + + GL+K GF+VDW A S PYD V+LDL +P +G Sbjct: 1 MRLLLVEDNARLASLLADGLAKEGFAVDWCATLDLATRAFASTPYDLVLLDLGMPDGNGV 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++ R G PVLI+TAR +L +RV GL G DDYL KPF L E+ AR AL+RR Sbjct: 61 TFVKALRRGGHTVPVLIITARSSLDDRVIGLDSGGDDYLVKPFELRELTARCRALLRRPG 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 L N+ LD R +AG + + P+E LLE LMR G V+++ +E+ LY Sbjct: 121 ACLGTTLAVANLELDTAGREVRVAGRVVPVPPRELGLLECLMRRVGHVVTKGALEDSLYA 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTL 216 + EVT NA+E V LRR+L + + T HGIGY L Sbjct: 181 LEAEVTPNALEAVVSRLRRRLAAAHAQVALHTAHGIGYML 220 >UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC-wHTH domains) n=6 Tax=Bacteria RepID=B3DZZ9_METI4 Length = 268 Score = 166 bits (420), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 87/220 (39%), Positives = 137/220 (62%), Gaps = 4/220 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L++ED++ I I L + GF+VD ++G + + + PYDA +LD+ LPG DG Sbjct: 46 MRVLVVEDELKIARFISRALEEEGFTVDCCSRGDEALLMMLATPYDAAVLDIMLPGPDGI 105 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +LR RE+G P+L+L+AR +++EGL GADDYL KPF++ E+ ARL AL+RRT Sbjct: 106 SVLRSLRERGISLPILLLSARSETRDKIEGLNSGADDYLPKPFSMDELVARLRALIRRTA 165 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G + + GN+ L+ R + + L KEF++LELLMR GRV +R + E+++ Sbjct: 166 GIGLSVYKVGNLTLNLLTREVFRGQKKIELTAKEFSILELLMRTPGRVFTRTQVCERVWN 225 Query: 181 WDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYTL 216 + + +N V+V++ LR+K+ I+TV G+GY + Sbjct: 226 YHFDPGTNLVDVYIQKLRKKIDEGEEQKLIQTVRGVGYKI 265 >UniRef50_Q7CWZ7 Two component response regulator n=2 Tax=Alphaproteobacteria RepID=Q7CWZ7_AGRT5 Length = 226 Score = 166 bits (420), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 89/218 (40%), Positives = 135/218 (61%), Gaps = 2/218 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+ED+ ++ +G+ L G++VD + G A+ + +D VILDL LP MDG Sbjct: 1 MRILLVEDNQVLSEGLSALLRGSGYAVDVVSDGASADAAIAAESFDLVILDLNLPEMDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++LR R + + VLILTAR E+V+GL LGADDY+ KPF + E AR+ L+RR Sbjct: 61 EVLRSMRSRQDKAAVLILTARGTPEEKVKGLDLGADDYMIKPFDITEFEARVRVLLRRNA 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G S+ L G V+ D R + G PL + +E ALLE+L AG+V++++ I + L Sbjct: 121 GLRSSALSFGKVLFDLTSRTFSADGRPLDIPAREVALLEVLFMRAGKVVAKEAIVQSLTG 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSD--FIRTVHGIGYTL 216 +D+++++NA+E +V LR++L ++T GIGY L Sbjct: 181 FDDDISANAIEQYVSRLRKRLAPHGLTVKTARGIGYYL 218 >UniRef50_B2IXN9 Multi-component transcriptional regulator, winged helix family n=4 Tax=Nostocaceae RepID=B2IXN9_NOSP7 Length = 624 Score = 166 bits (420), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 89/222 (40%), Positives = 135/222 (60%), Gaps = 6/222 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD L+ + T L+K + VD G G E + YD ++LD+ LP +DG Sbjct: 1 MRILLVEDDDLLAQAVATALTKQNYVVDIAADGEAGWELVNVCNYDLILLDVILPKLDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + R+ R++G + +L+LTA+D ++V GL GADDY+ KPF E++AR+ AL+RR N Sbjct: 61 SLCRQLRQEGYQMLILLLTAKDTKTDKVIGLDAGADDYVVKPFDFQELSARIRALLRRGN 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 L G+++LDP T A L L KEF+LL+L +RN R+ SR I ++L++ Sbjct: 121 TALPPVLEWGSLLLDPSTCEVTYADIALNLTAKEFSLLDLFLRNNQRIFSRATIVDQLWS 180 Query: 181 WDEEVT-SNAVEVHVHHLRRKLGS-----DFIRTVHGIGYTL 216 +++ N ++ H+ LR+KL + DFI TV+G+GY L Sbjct: 181 AEKDPPEENTIKSHIKSLRQKLKTAGANYDFIETVYGMGYRL 222 >UniRef50_B1ZVS5 Two component transcriptional regulator, winged helix family n=3 Tax=Chlamydiae/Verrucomicrobia group RepID=B1ZVS5_OPITP Length = 228 Score = 165 bits (418), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 87/219 (39%), Positives = 136/219 (62%), Gaps = 3/219 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L++EDD I + GL + G++VD G G S YDA ++D+ LP +DG Sbjct: 6 MRVLVVEDDAKISSFVVKGLKQEGYAVDHAPDGDTGLALATSTAYDAAVVDIMLPELDGL 65 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++R R + PVL L+AR ++ +RV+GL+ G DDYL KPFA E++ARL+AL+RR + Sbjct: 66 SLVRRLRAERSAMPVLFLSARASVEDRVKGLQAGGDDYLTKPFAFAELSARLQALIRRAS 125 Query: 121 -GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 + L G+V LD R T+ G+P+ L+P+EF+LLE L+R+AGR +++ +I E ++ Sbjct: 126 RSPEATRLSAGDVTLDLVSRTVTVGGQPVELQPREFSLLEYLLRHAGRPVTKVMILEHVW 185 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGSDFIR--TVHGIGYTL 216 + + +N V+V + LR K+ D R T+ G+GY Sbjct: 186 DYSFDPQTNVVDVLMSRLRSKIDPDKTRIETLRGVGYVF 224 >UniRef50_C6RM27 Transcriptional regulatory protein QseB n=1 Tax=Acinetobacter radioresistens SK82 RepID=C6RM27_ACIRA Length = 221 Score = 165 bits (418), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 82/214 (38%), Positives = 128/214 (59%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M ++L+EDD I I L + SV+ + + + D +LDL LP DG Sbjct: 1 MFVVLVEDDPYIAHSICAALDFLNISVEHVSTASAADYFIRHSAVDLCLLDLGLPDQDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++LR+WR+ P+L+LTAR + +E L LGADDYL KPF L E+ ARL AL RR Sbjct: 61 ELLRKWRQDQIHTPILVLTARIQTRQCIEALNLGADDYLTKPFELDELVARLHALTRRHR 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G +SN L+ ++ L+ + + + L +E++LLE LM + ++L + + +KLY Sbjct: 121 GFSSNVLQFEDLSLNQDTQEVFYQHQAIQLSRREYSLLETLMSHPNQILKNEQLLDKLYG 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGY 214 + + + SNA+ VH++HLR+KL +DFI+T+ G+GY Sbjct: 181 YQDSIESNALNVHIYHLRQKLNADFIQTIRGVGY 214 >UniRef50_A0LPJ2 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=A0LPJ2_SYNFM Length = 263 Score = 165 bits (418), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 95/223 (42%), Positives = 137/223 (61%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L++EDD I D ++ L++ GF +D G QG E YDA+I+D+ LP MDG Sbjct: 32 MRVLVVEDDRQITDFLERALTEAGFKIDVAWNGPQGFELALKESYDAIIIDVILPVMDGL 91 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +IL++ R +G PVLIL+A+ ++++RV GL LG DDYL KPF L E+ AR+ +L+RR+ Sbjct: 92 EILQKLRNRGILTPVLILSAKGSVSDRVSGLELGGDDYLTKPFELAELLARVWSLIRRSK 151 Query: 121 -GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 Q + +L+ G++ LD R E L P+EFALLE LMRN GRV++R I E ++ Sbjct: 152 VNQETVQLKAGDLWLDLVSRRVFRGDEEFRLLPQEFALLEYLMRNKGRVVTRAEILENVW 211 Query: 180 TWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTLGE 218 ++ +N VEVH+ LR KL ++T GY L E Sbjct: 212 GYNFVPATNVVEVHICRLREKLERPNKPRLLQTFRKAGYALVE 254 >UniRef50_C4I5X0 DNA-binding response regulator n=78 Tax=Bacteria RepID=C4I5X0_BURPS Length = 232 Score = 165 bits (417), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 95/216 (43%), Positives = 136/216 (62%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LL+EDD +G+ ++ + K G D + + APYD ++LDL LP G Sbjct: 14 MRVLLVEDDPWLGEAVRAQIEKDGHPTDCVASLAHARRHVAVAPYDLILLDLLLPDGRGL 73 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 D LRE R G PV+ILTA D +A R+ GL GADDYL KPF L E++AR+ A+ RR + Sbjct: 74 DFLRELRAGGSTVPVIILTALDQVANRIAGLNAGADDYLIKPFDLSELSARVSAVARRYS 133 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G + ++ G + +D R T AG + L E+ALLE L+++ G +LS+ +EE+LY+ Sbjct: 134 GNPNPLVKLGELAVDIAARSVTRAGARVDLTASEWALLETLIQHPGMILSKPQLEERLYS 193 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTL 216 + +EV SN +EVHV LR+KLG++ I TV G+GY L Sbjct: 194 FSDEVGSNTIEVHVSRLRKKLGAELIETVRGLGYRL 229 >UniRef50_Q47456 Transcriptional regulatory protein pcoR n=99 Tax=Bacteria RepID=PCOR_ECOLX Length = 226 Score = 165 bits (417), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 89/219 (40%), Positives = 127/219 (57%), Gaps = 4/219 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RIL++ED+ G ++ GL + G+ D F GR G A YD +ILD+ LP +DG Sbjct: 3 RILIVEDEQKTGRYLQQGLVEEGYQADLFNNGRDGLGAASKGQYDLIILDVMLPFLDGWQ 62 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 I+ RE G EPVL LTA+D + ++V+GL LGADDYL KPF E+ AR+ L+RR Sbjct: 63 IISALRESGHEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLRRARS 122 Query: 122 QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTW 181 QA+ ++ +D +R +G+ + L KE+ LLELL++ G VL R LI ++ Sbjct: 123 QAATVCTIADMTVDMVRRTVIRSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWNM 182 Query: 182 DEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTL 216 + + +N ++V V LR K+ DF I TV G GY L Sbjct: 183 NFDSDTNVIDVAVRRLRSKIDDDFEPKLIHTVRGAGYVL 221 >UniRef50_Q2RPG3 Two component transcriptional regulator, winged helix family n=8 Tax=Alphaproteobacteria RepID=Q2RPG3_RHORT Length = 229 Score = 164 bits (416), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 95/219 (43%), Positives = 131/219 (59%), Gaps = 6/219 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALY---SAPYDAVILDLTLPGM 57 MR+LL+ED+ + ++ L + GF+VD G+EAL+ + P+DAV+LDL LP + Sbjct: 1 MRVLLVEDEPTLALTLRRVLERAGFAVDL---ADDGEEALFLGETEPFDAVVLDLGLPRL 57 Query: 58 DGRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMR 117 DG +LR WR G PVLILTAR E+V G GADDY+ KPF + EV RL+AL+R Sbjct: 58 DGIGVLRRWRAAGIGVPVLILTARGGWPEKVAGFEAGADDYVTKPFEMEEVVLRLKALIR 117 Query: 118 RTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEK 177 R G S EL G + LD ++ G PL L +E+ +L L+ G+ +SR I + Sbjct: 118 RAAGHPSTELVAGPLRLDTTSGRGSVEGRPLDLTAQEYKILTYLLLRQGQTVSRSDIVDH 177 Query: 178 LYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTL 216 +Y D + SN ++V V LRRKLG+ I TV G+GY L Sbjct: 178 VYDRDSDRDSNVIDVLVGRLRRKLGAPLIHTVRGLGYRL 216 >UniRef50_Q2JAC4 Two component transcriptional regulator, winged helix family n=90 Tax=cellular organisms RepID=Q2JAC4_FRASC Length = 283 Score = 164 bits (416), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 94/220 (42%), Positives = 133/220 (60%), Gaps = 4/220 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L++ED+ ++ GL + G++VD G YDA++LDL LPG+DG Sbjct: 30 MRVLVVEDEARTAALLRRGLVEEGYAVDVVGDGADAVWQATEIGYDAIVLDLMLPGLDGF 89 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++ R RE G+ PVL+LTAR + +R+ GL GADDYL KPF+ E+ ARL AL+RR Sbjct: 90 EVCRRLREAGRWAPVLMLTARGDVDDRIRGLDAGADDYLPKPFSFGELTARLRALVRRGA 149 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + LR G++ LDP + AG PL L KEFALL LLMR+ VL+R I + ++ Sbjct: 150 VERPTVLRIGDLRLDPAEHRVLRAGSPLDLSAKEFALLHLLMRHPDEVLTRTYIVDHVWD 209 Query: 181 WDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 216 + + TSN V+ +V ++RRK+ G I TV G+GY L Sbjct: 210 FAFDGTSNIVDQYVRYVRRKIDIPDGPSLIETVRGVGYRL 249 >UniRef50_B4SPK8 Two component transcriptional regulator, winged helix family n=4 Tax=Xanthomonadaceae RepID=B4SPK8_STRM5 Length = 227 Score = 163 bits (413), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 95/218 (43%), Positives = 127/218 (58%), Gaps = 2/218 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L+ EDD I G+ L + G VD G AL S Y ++LDL LP +DGR Sbjct: 1 MRVLIAEDDPDIASGLCASLRRQGHVVDHVDNGAHADAALGSTQYALLVLDLGLPQLDGR 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 D+L+ R++G VL++TARD LAERV L LGADDYL KPFAL E AR+ A +RR Sbjct: 61 DVLQRLRQRGDGLAVLVVTARDGLAERVRVLDLGADDYLVKPFALDEFEARVRAQLRRVT 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + +LR G + LD + + L L +EF LL L A R++SR + E L Sbjct: 121 SNGNPDLRIGRLRLDLAGHRVWIDEQSLELTAREFGLLSALAVRAERIVSRAQLVEALCD 180 Query: 181 WDEEVTSNAVEVHVHHLRRKL--GSDFIRTVHGIGYTL 216 W +++T N +++ +H LRRKL G IRTV G+GY L Sbjct: 181 WGQDLTDNGLDIALHRLRRKLQPGGIGIRTVRGLGYML 218 >UniRef50_A6WIX6 Two component transcriptional regulator, winged helix family n=3 Tax=Bacteria RepID=A6WIX6_SHEB8 Length = 227 Score = 163 bits (413), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 88/224 (39%), Positives = 133/224 (59%), Gaps = 8/224 (3%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M +LL+ED+ I D I GL F+V G QG +A + +D +ILD+ LPG DG Sbjct: 1 MNVLLVEDEQKIADFICEGLRAKHFNVTHCADGNQGYQAASNNTHDVIILDIMLPGRDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 DILR R++G P+++LTAR+ L +RV+GL +GADDYL KPF + E+ AR++AL+RR Sbjct: 61 DILRSLRQQGVDTPIILLTARNELGDRVQGLDMGADDYLAKPFYVEELHARIQALLRRHG 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G + + G + LD R G+ + L +EF+LLE LMR+ +VL+R + E ++ Sbjct: 121 GTQQHVVEVGALQLDCINRSINCQGQSVELTSREFSLLEHLMRSPNQVLTRGQLLEHVWG 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGS--------DFIRTVHGIGYTL 216 +D + +N V+V + +R K+ S I ++ G GY L Sbjct: 181 YDFDPCTNVVDVCIKRIRSKMASLEKAGKMVGAIESIRGTGYRL 224 >UniRef50_Q47EV7 Response regulator receiver:Transcriptional regulatory protein, C-terminal n=1 Tax=Dechloromonas aromatica RCB RepID=Q47EV7_DECAR Length = 229 Score = 163 bits (412), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 95/218 (43%), Positives = 132/218 (60%), Gaps = 2/218 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M ILL+EDD L+ DG+ L G+ VD G L + YD VILD+ LPG+DG Sbjct: 1 MHILLVEDDALLADGLARALRHSGYIVDTANDGLSADSLLANEAYDLVILDIGLPGLDGC 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++L+ R + Q+ PVL+L+AR A+ ERV L LGADDY+ KP E+ AR+ AL+RR Sbjct: 61 EVLQRLRTRRQQTPVLVLSARLAVEERVRLLDLGADDYVVKPVTQAELEARVRALIRRRL 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G+AS E+ G++ LD + A L L L +E+A LE L R++S++ + + LY+ Sbjct: 121 GEASPEVVLGSLRLDTVGKRAWLNDTALELNAREWAALEFLAGRVNRIVSKEQLIQALYS 180 Query: 181 WDEEVTSNAVEVHVHHLRRKL--GSDFIRTVHGIGYTL 216 W +E+T NA+E V LR KL IRTV G+GY L Sbjct: 181 WQDEITPNAIEKLVSRLRVKLEEAGITIRTVRGLGYYL 218 >UniRef50_B8HL49 Multi-component transcriptional regulator, winged helix family n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HL49_CYAP4 Length = 652 Score = 163 bits (412), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 90/221 (40%), Positives = 133/221 (60%), Gaps = 4/221 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+ILLIEDD ++ D + + L + VD GR+G + YD +++D+ LP DG Sbjct: 1 MKILLIEDDPVLTDVLVSTLRVQRYIVDAVADGRRGWDYAQDTSYDLILMDVGLPQQDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + R R +G + P+L++TA+DA +R+ GL GADDYL KP L E+ AR+ AL+RR + Sbjct: 61 TLCRRLRAQGSQVPILLITAQDAKVDRIAGLDAGADDYLTKPLDLAELQARVRALLRRGS 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + L+ GN+ LDP T A L L PKE+ LLEL +R+ G+V SR + E L+T Sbjct: 121 ETKTPILQVGNLQLDPRSCQVTYAERSLNLTPKEYNLLELFLRHPGQVFSRGQLVEHLWT 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTLG 217 +D+ +V+ HV LR+KL + D+I ++GIGY L Sbjct: 181 FDDPPLEESVKAHVKGLRQKLKAAGAVDWIENIYGIGYRLN 221 Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust. Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 2/121 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 + +LL++DD + + I L G + + L S D +ILD+ +P G Sbjct: 380 VNVLLVDDDPIFLEQIVLLLQPWGIHLTGINNPLELWSVLPSTRPDLLILDVEMPQTSGI 439 Query: 61 DILREWRE--KGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR 118 ++ + R + Q P++ LTA + +GADD++ KP + E+ R+ + R Sbjct: 440 ELCQSLRSDPEWQSLPIIFLTAHRDRETIQQVFTVGADDFVTKPVVVPELLTRIINRLER 499 Query: 119 T 119 T Sbjct: 500 T 500 >UniRef50_B7GFY6 DNA-binding response regulator, OmpR family (REC-wHTH domains) n=16 Tax=Firmicutes RepID=B7GFY6_ANOFW Length = 226 Score = 162 bits (411), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 91/221 (41%), Positives = 136/221 (61%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFS-VDWFTQGRQGKEALYSAPYDAVILDLTLPGMDG 59 MR+LL EDD+ +G+ I L K G VDW +G + ++ YD +ILD LP DG Sbjct: 4 MRVLLAEDDIYLGELIVHLLKKKGVEHVDWVQEGEDAYDYALASFYDVIILDWMLPNGDG 63 Query: 60 RDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 I + R++G +L+LTA+DA+ +RVEGL GADDYL KPF + E+ ARL+AL RRT Sbjct: 64 VSICQRLRKRGYHGAILMLTAKDAVQDRVEGLEAGADDYLVKPFEIDELMARLKALSRRT 123 Query: 120 NGQASNEL-RHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 E+ R G ++ GE + L P+EF LL+LL++N GRVL+R +I +++ Sbjct: 124 FAPIQEEIVRWGAFEVNRTSHTLLKDGEQIILTPREFQLLDLLLQNRGRVLTRDIILDRI 183 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGSD---FIRTVHGIGYTL 216 + +D +V+ ++ V LR+K+G + I+TV G+GYT+ Sbjct: 184 WGYDADVSMKTIDATVKLLRKKIGDEQQQLIKTVRGVGYTI 224 >UniRef50_B5ZHN8 Two component transcriptional regulator, winged helix family n=2 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=B5ZHN8_GLUDA Length = 234 Score = 162 bits (410), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 97/223 (43%), Positives = 130/223 (58%), Gaps = 9/223 (4%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 +R+LL+EDD ++ GL++ G V W G G A +D ++LD LPG+DG Sbjct: 8 VRLLLVEDDPHTAAYVRDGLARDGIGVTWVANGTDGLSAALGRHWDVIVLDRMLPGLDGM 67 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 IL+ RE G R PVL LT D + RV GLR GADDYL KPFA+ E+AAR+ L+RR Sbjct: 68 AILKRVREVGIRIPVLFLTTMDGVNSRVGGLRGGADDYLVKPFAVRELAARVAVLLRRMG 127 Query: 121 -GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 + + LR + LD R T GE L L+P+E +LE MRN G +LSR+++ L+ Sbjct: 128 LARDATVLRAAGITLDLLTREVTRHGEKLFLQPQEVRILEYFMRNPGTILSRRML---LH 184 Query: 180 TW--DEEVTSNAVEVHVHHLRRKLGSD---FIRTVHGIGYTLG 217 W D V +N VE H+ LR KLG D I+T+ G GY +G Sbjct: 185 AWNVDFPVHTNLVETHLSRLRDKLGPDGRQVIQTIRGAGYVMG 227 >UniRef50_A6CDX9 Two component transcriptional regulator, winged helix family protein n=2 Tax=Bacteria RepID=A6CDX9_9PLAN Length = 231 Score = 162 bits (409), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 98/218 (44%), Positives = 129/218 (59%), Gaps = 3/218 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RIL++ED+ I D + GLS+ G+ V+ GR G L S +D VILD LP DG Sbjct: 4 RILVVEDEARIADFLVRGLSEEGYGVEHAEDGRIGWLLLNSETWDLVILDWWLPVEDGIQ 63 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 +LR +R+K + PVL LTARDA+ ERV GL GADDYL KPFA E+ AR+ AL+RR Sbjct: 64 LLRRFRQKNRTTPVLFLTARDAVTERVTGLDAGADDYLTKPFAFDELLARVRALLRRPGQ 123 Query: 122 QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTW 181 + L + ++ D + T G PL L KEF+LL +RN G+VLSR I + ++ Sbjct: 124 ASGVVLEYADIRADLETQRVTRGGTPLDLTAKEFSLLLFFLRNPGKVLSRTRIYDTVWDD 183 Query: 182 DEEVTSNAVEVHVHHLRRKL---GSDFIRTVHGIGYTL 216 + SN +EVHV LR KL G I+T+ G GY L Sbjct: 184 SYDGLSNTLEVHVKELRHKLEACGPRVIQTLRGRGYVL 221 >UniRef50_D1B9J7 Two component transcriptional regulator, winged helix family n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B9J7_THEAS Length = 226 Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 89/221 (40%), Positives = 135/221 (61%), Gaps = 4/221 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L+IED+ + ++ G ++G VD GR G + + S YD VILD+ LP MDG Sbjct: 1 MRLLIIEDNEDLCQLLREGFEELGHEVDTAGDGRNGLDLIRSGKYDCVILDIMLPEMDGF 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +++ + R++G PV++LTA+D++ +RV GL GADDYL KPF E+ AR+ ALMRR+ Sbjct: 61 EVMDQVRDEGHDVPVIMLTAKDSVEDRVHGLEQGADDYLTKPFDFKELMARVNALMRRSG 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 Q + L+ G + LDP R + + L+ +EF +LELLMR +V SR I +++ Sbjct: 121 DQRRSILKCGPLTLDPVARECRVGDIKVPLRRREFDILELLMRYENQVFSRDKIIAQVWQ 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYTLG 217 + + TSN V+VH+ +LR KL + TV G+GY + Sbjct: 181 KEYDGTSNVVDVHIKYLRDKLRPFNLDMMVVTVRGVGYKVA 221 >UniRef50_B9XE94 Two component transcriptional regulator, winged helix family n=2 Tax=Verrucomicrobiales RepID=B9XE94_9BACT Length = 224 Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 88/223 (39%), Positives = 131/223 (58%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL++ED+ I+ L F+VD G + + P+DA++LD+ LPG DG Sbjct: 1 MRILVVEDEKKTASFIRKALQAESFAVDVSHDGTEALLLASNTPFDAIVLDIMLPGRDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +LR+ R++ + PVL+L+AR + ERVEGL GADDYL KPFAL E+ AR+ ++ RR+N Sbjct: 61 SVLRQLRQQKNQTPVLLLSARGEVNERVEGLNAGADDYLPKPFALAELIARVRSIGRRSN 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 S L+ ++ LD R A G L +E+ LLE LMR GR+ R I EK++ Sbjct: 121 EPKSVLLQVADLTLDTITRQAQRGGTSFELTTREYRLLEFLMRTPGRICGRMAILEKVWD 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTLGEK 219 +D + +N V+V++ LR K+ F + TV +GY + E+ Sbjct: 181 YDFDPGTNLVDVYIKRLREKVDEGFEPKLLHTVRNVGYVMKEQ 223 >UniRef50_C6BHC0 Two component transcriptional regulator, winged helix family n=58 Tax=Burkholderiaceae RepID=C6BHC0_RALP1 Length = 236 Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 99/230 (43%), Positives = 134/230 (58%), Gaps = 14/230 (6%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILLIEDD I GI GL++ G V G E L +D VILDL LPG+DG Sbjct: 1 MRILLIEDDRAIASGIHAGLTQAGHRVHVVHDGVFATEQLTRQTHDLVILDLGLPGIDGM 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L ++R + + PVLILTARD L ++V GL GADDYL KPF ++E+ AR+ AL+RR N Sbjct: 61 TLLSQFRARDRVTPVLILTARDGLLDKVNGLNAGADDYLLKPFEMLELVARVGALLRRRN 120 Query: 121 GQ----ASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEE 176 A ++ G + + +R + PL L P+EFA+LELLM GRV+S+ ++E Sbjct: 121 DSTEPAARPDILVGRLRMSGVERRIFVDAAPLELSPREFAVLELLMLRQGRVVSKVQLQE 180 Query: 177 KLYTW--------DEEVTSNAVEVHVHHLRRKL--GSDFIRTVHGIGYTL 216 L ++ + V A+EV+VH +RRK+ I TV G GY L Sbjct: 181 HLASFGHAIGEASHDVVGDTAIEVYVHRVRRKIEHSEAEIVTVRGFGYLL 230 >UniRef50_B9KBQ0 Response regulator n=6 Tax=Thermotogaceae RepID=B9KBQ0_THENN Length = 233 Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 90/220 (40%), Positives = 135/220 (61%), Gaps = 4/220 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LL+ED+ + D I L K F+VD G +G + +D VILD+ LP DG Sbjct: 11 MRVLLVEDEKDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEDFDVVILDVLLPVHDGW 70 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +IL+ REKG PVL+LTA + RV+GL +GADDYL KPF L E+ AR++AL+RR Sbjct: 71 EILKAMREKGINTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVKALIRRKA 130 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + +L G+++LD R G+ + L KE+ +LE LM N RV++++ ++E L++ Sbjct: 131 ENKNVKLVCGDLILDTATRKVFRGGKEIDLTKKEYQILEYLMMNKNRVVTKEELQEHLWS 190 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTL 216 +D+ V S+ + H+ +LR+K+ F I TV GIGY + Sbjct: 191 FDDTVFSDTLRSHIKNLRKKIDRGFKKKIIHTVRGIGYVV 230 >UniRef50_Q21TS4 Two component transcriptional regulator, winged helix family n=2 Tax=Burkholderiales RepID=Q21TS4_RHOFD Length = 239 Score = 160 bits (406), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 83/218 (38%), Positives = 136/218 (62%), Gaps = 2/218 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL++ED+ + + L K ++VD G AL S Y+ +ILDL LP +DG+ Sbjct: 16 MRILVVEDNTELAQWLGRTLRKEQYTVDCIDNGADADFALKSEKYNLIILDLALPKLDGK 75 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++LR R + + PVLILTA + + RV L GADDY+ KPF + E+ AR+ L+RR++ Sbjct: 76 EVLRRLRARDDQTPVLILTANNTIQSRVSKLDQGADDYMAKPFEIEELEARIRMLLRRSS 135 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 GQAS + G++ + R ++ + L L P+E A+LE+L+R +G +++ + + L++ Sbjct: 136 GQASPLIACGDLSYNTNTREFHISQQLLALTPRERAVLEMLLRKSGTTVTKHALAQSLFS 195 Query: 181 WDEEVTSNAVEVHVHHLRRKL--GSDFIRTVHGIGYTL 216 E+ +++A+E++VH LR+KL S I T+ G+GY L Sbjct: 196 LSEDASTDAIEIYVHRLRKKLEHSSAQIMTLRGLGYLL 233 >UniRef50_Q2P6R9 Two-component system regulatory protein n=28 Tax=Proteobacteria RepID=Q2P6R9_XANOM Length = 233 Score = 160 bits (406), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 89/220 (40%), Positives = 128/220 (58%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LL+ED+ + D I + + G +VDW G L +D V+LD+ LP +DG Sbjct: 1 MRLLLVEDNADLADAIVRRMRRSGHAVDWQADGLAAASVLRYQSFDLVVLDIGLPKLDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L RE+G PVL+LTARD + +RV+ L +GADDYL KPF E AR L+RR Sbjct: 61 RVLAGMRERGDTTPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRNR 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 GQAS ++ G + D TL G P+ L +E+ L ++L+ GRV+ + I L+ Sbjct: 121 GQASEVVQIGGFVFDNAAHTLTLDGVPIELPNREYRLFDILIGRLGRVVGKDEIGNGLFG 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIR--TVHGIGYTLGE 218 +D++ NA+E++V LRRKL + +R TV G GY L E Sbjct: 181 FDDDAGPNAIELYVGRLRRKLAAAPLRIVTVRGAGYKLEE 220 >UniRef50_A0PWB4 Response regulator mprA n=284 Tax=Bacteria RepID=MPRA_MYCUA Length = 232 Score = 160 bits (405), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 92/227 (40%), Positives = 140/227 (61%), Gaps = 9/227 (3%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 +RIL+++DD + + ++ LS G++V+ G + E + S DA++LD+ +P +DG Sbjct: 3 VRILVVDDDRAVRESLRRSLSFNGYTVELAHDGVEALEMIASDRPDALVLDVMMPRLDGL 62 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++ R+ R G P+L+LTARD+++ERV GL GADDYL KPFAL E+ AR+ AL+RRT Sbjct: 63 EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 122 Query: 121 -----GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIE 175 S + ++ LDP R T ++L EFALLE+L+ N RVL+R I Sbjct: 123 LEDDEAADSVAMTFSDLSLDPVTREVTRGARRISLTRTEFALLEMLIANPRRVLTRSRIL 182 Query: 176 EKLYTWDEEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYTLGE 218 E+++ +D + NA+EV+V +LRRK ++ I TV G+GY L E Sbjct: 183 EEVWGFDFPTSGNALEVYVGYLRRKTEAEGEPRLIHTVRGVGYVLRE 229 >UniRef50_B1C8W4 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C8W4_9FIRM Length = 226 Score = 160 bits (404), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 93/223 (41%), Positives = 131/223 (58%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L+IED++ + + L K D G G YD ++LD+ LP +DG Sbjct: 1 MRVLIIEDEVNLALPLVALLEKNKILADTVADGTSGLMLARKPVYDVIVLDIMLPEIDGF 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 IL+ RE+ P+L+LTA D + +RV+GL LGADDYL KPF E+ AR++AL RR + Sbjct: 61 TILKTLREEHNNTPILLLTALDNIDDRVKGLNLGADDYLTKPFDTKELIARIKALSRRGS 120 Query: 121 GQASNELRH-GNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 G + E+ H GNV L+ ++ TL KE LLE LM+N VLS+ I +K++ Sbjct: 121 GSITEEVLHIGNVSLNVNNASLSIGDREETLTKKEANLLETLMKNKDNVLSKDYILDKVW 180 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGSDF---IRTVHGIGYTLGEK 219 D N+VE+++H+LR+KLGSD I T G+GYTL EK Sbjct: 181 GIDSYAIDNSVEIYIHYLRKKLGSDADVKIVTNRGLGYTLKEK 223 >UniRef50_B2TJG1 DNA-binding response regulator n=4 Tax=Clostridium botulinum RepID=B2TJG1_CLOBB Length = 224 Score = 160 bits (404), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 87/222 (39%), Positives = 140/222 (63%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL+IEDD ++ + +K GL + GFS D G+E ++ YD ++LDL LP DG Sbjct: 1 MRILIIEDDKILANIVKLGLEEFGFSSDVANTAGDGEEKIFINEYDTILLDLNLPDKDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++L++ RE G P++I+TAR + ER GL LG+DDY+ KPF LIE+ AR+ A++RR Sbjct: 61 EVLKDIRESGITTPIIIITARIEVKERAIGLDLGSDDYIVKPFDLIELRARINAVIRRFY 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G+ + E++ GN++++P R+ T + +P+ L KEF +LE + N V+S + I E +Y Sbjct: 121 GRTNAEIKIGNLLINPKTRVVTYSLKPVKLSAKEFDVLEYIANNHPHVVSSESIAEHVYD 180 Query: 181 WDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTLGE 218 + S+ + VH+ +L++KL G + + T+ G GY + E Sbjct: 181 EFFDPFSSVLRVHISNLKKKLKLASGQELLLTLRGKGYRIWE 222 >UniRef50_A5UWJ8 Two component transcriptional regulator, winged helix family n=1 Tax=Roseiflexus sp. RS-1 RepID=A5UWJ8_ROSS1 Length = 231 Score = 159 bits (403), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 96/224 (42%), Positives = 130/224 (58%), Gaps = 9/224 (4%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LLIED+ + + GL + G++VDW G QG E YD +ILDL LP +DG Sbjct: 1 MRLLLIEDEDDLAHALVRGLRQQGYAVDWAADGEQGCELASINEYDLIILDLNLPALDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 D+ R R +LILTARD ERV GL GADDYL KPF E+ AR+ AL+RR Sbjct: 61 DVCRYLRANYPHLLILILTARDQPEERVIGLDTGADDYLIKPFHFGELLARIRALLRRDL 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 L++ ++ LDP + L + L L KEFA+L LMR+ G V++++++ E + Sbjct: 121 RVRQPLLQYRDLKLDPATQTVWLNNQRLNLTRKEFAILSYLMRHQGEVITQEMLLE--HV 178 Query: 181 WDEEVT--SNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLG 217 WD V +N V VH++ LRRKL +I TV G+GY LG Sbjct: 179 WDGTVNPFTNTVRVHINALRRKLRDTIAPYRYIETVVGVGYRLG 222 >UniRef50_A7ZEI3 Transcriptional activator protein CopR n=9 Tax=Bacteria RepID=A7ZEI3_CAMC1 Length = 219 Score = 159 bits (402), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 133/219 (60%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL++ED++ + I L K G+SVD G + + A YD ++LDL +P MDG Sbjct: 1 MKILVVEDEIDLNSVITRHLKKNGYSVDSACNGEEAMDFTAVAHYDLIVLDLMMPVMDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 L+ R PVLILTA+D + + V+GL GADDYL KPF E+ AR+ L+RR + Sbjct: 61 TFLQRSRAAKLVTPVLILTAKDDVDDVVKGLDAGADDYLVKPFDFKELLARVRTLIRRNS 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G ++E+ G + +D K+ +GE + L KE+ +LE LM N GR+L+R I+E ++ Sbjct: 121 GNVASEICAGELKIDLSKKSVEFSGEQIELTGKEYEILEFLMLNKGRILTRDQIKEHVWD 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLG-SDFIRTVHGIGYTLGE 218 +D SN ++V + ++R+KLG + I+T G+GY + + Sbjct: 181 FDYTGGSNVIDVLIKNIRKKLGECEAIQTKRGLGYVVKD 219 >UniRef50_B1HZW1 Transcriptional regulatory protein cutR (Defective melC1 suppressor protein) n=6 Tax=Firmicutes RepID=B1HZW1_LYSSC Length = 230 Score = 159 bits (402), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 86/226 (38%), Positives = 137/226 (60%), Gaps = 11/226 (4%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M++LL+ED+ ++ I GL K G++VD G++ E YD +ILDL LP MDG Sbjct: 1 MKLLLVEDEAVLSRIISKGLKKSGYAVDTAFDGKEALELFEINEYDLIILDLNLPKMDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++L + R + + +LIL+AR A+ +++ GL GA+DYL KPF E+ AR+ L+RR+ Sbjct: 61 EVLEQIRVQNEDVKILILSARSAIHDKIMGLDCGANDYLIKPFDFQELDARIRNLLRRSF 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVL-SRKLIEEKLY 179 Q S + N+ LD K+I + GE + + KE+A+LE LM + +V+ S +LIE + Sbjct: 121 SQKSAIISFENITLDSSKKIVLVDGEMIHVTKKEYAILEYLMLHQNKVISSEELIE---H 177 Query: 180 TWDEE--VTSNAVEVHVHHLRRKLGS-----DFIRTVHGIGYTLGE 218 WD E + SN+++ H+H LR+K+ + I+T+ G GY + E Sbjct: 178 VWDSETDLFSNSLKFHIHSLRKKIADVLGEIEVIQTIRGQGYIITE 223 >UniRef50_A9BP99 Two component transcriptional regulator, winged helix family n=60 Tax=Proteobacteria RepID=A9BP99_DELAS Length = 262 Score = 159 bits (401), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 92/224 (41%), Positives = 135/224 (60%), Gaps = 6/224 (2%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLP-GMDGR 60 R L+IEDD L I GL + G V + G QG +D +ILD LP G DG Sbjct: 31 RYLIIEDDALNARYIAEGLRQQGAQVAVCSDGVQGIAMAVGESWDVIILDRMLPNGFDGL 90 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 IL+ R G++ PVL+L+A A ERV GL+ G DDYL KPFA E++ARLEAL+RR Sbjct: 91 QILQTLRSMGKQTPVLVLSALSATDERVRGLKAGCDDYLTKPFAFSELSARLEALVRRAQ 150 Query: 121 GQA-SNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 A + E+R ++ L+ R A AG+PL L+P+EF LL LM++A ++++R ++ E ++ Sbjct: 151 IPAPAREMRLADLRLNLLTRSAERAGQPLALQPREFRLLAFLMQHAHQIVTRTMLLESVW 210 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTLGEK 219 + + +N ++VH+ LR K+ F I TV G+GY+L ++ Sbjct: 211 DYRFDPQTNVIDVHISRLRGKVDKGFEPALIHTVRGVGYSLSDR 254 >UniRef50_D2QKB6 Two component transcriptional regulator, winged helix family n=11 Tax=Bacteroidetes RepID=D2QKB6_9SPHI Length = 230 Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 86/224 (38%), Positives = 137/224 (61%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL++ED+ + +K GL + VD G+ G+ + YD ++LD+ LP M+G Sbjct: 6 MKILVVEDEPKLASFVKKGLEEQSCEVDVAYDGQVGRNMALNNLYDVIVLDINLPKMNGF 65 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 D+++ R++ R PVL+LTA ++ +++ G GADDYL KPF E+ ARL AL +R++ Sbjct: 66 DVVQSIRQEKNRTPVLMLTAMGSVDDKLTGFEAGADDYLVKPFEFRELMARLRALTKRSS 125 Query: 121 --GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 G +N L+ ++ LD +++A + + L KEF LL+ LMRN GRV+SR I EK+ Sbjct: 126 DAGMQTNVLKVADLELDLNEKVARRGDKRIELTAKEFGLLDYLMRNRGRVVSRVDIAEKV 185 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTLGE 218 + + +N ++V+V+ LR+K+ DF I TV G+GY L E Sbjct: 186 WDIHFDTGTNVIDVYVNFLRKKIDKDFPTKLIHTVIGMGYMLKE 229 >UniRef50_B7QTW7 Two-component response regulator n=1 Tax=Ruegeria sp. R11 RepID=B7QTW7_9RHOB Length = 225 Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 90/221 (40%), Positives = 130/221 (58%), Gaps = 7/221 (3%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD IG GL G VDW GR+ A + YD ++ D +P +DG Sbjct: 1 MRILLLEDDADIGAWTSKGLGAAGHVVDWIENGREALIAASTRDYDVLVFDRMVPDLDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 LR R P+++LTA A+ +RVEGL GADDYL KPFA+ E+ AR+ AL RR Sbjct: 61 SALRTLRGARINTPMILLTALGAVEDRVEGLEAGADDYLSKPFAMSELLARITALSRRGR 120 Query: 121 GQA---SNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEK 177 G+ + +L H + LD + T G + L PKEF LLE+LMR+ GR+ +R ++ E+ Sbjct: 121 GEGDAPATKLSHRGLELDLLSQTCTCHGTAVPLNPKEFRLLEVLMRSKGRIQTRAMLLER 180 Query: 178 LYTWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGY 214 ++ + E +++ VE H+ LR K+ +++IRT+ G GY Sbjct: 181 VWDINFEPSTSVVETHMSRLRNKIEKPFDAEYIRTIRGSGY 221 >UniRef50_D1ST94 Two component transcriptional regulator, winged helix family n=1 Tax=Acidovorax avenae subsp. avenae ATCC 19860 RepID=D1ST94_9BURK Length = 223 Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 96/219 (43%), Positives = 134/219 (61%), Gaps = 3/219 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL++EDD + GI+ L G+ VD G A+ +A Y+A +LDL LP DG Sbjct: 1 MRILVVEDDPALRLGIRRMLQSEGWQVDVANDGELALTAVATAEYEAAVLDLGLPRRDGF 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALM-RRT 119 ++LR WRE+ + VLILTARD L +RV GL GADD+L KPF E+ ARL A+ RR+ Sbjct: 61 EVLRRWREQRRDLAVLILTARDELDQRVRGLNEGADDFLAKPFEAQELVARLRAITRRRS 120 Query: 120 NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 G +N LR G++ D R L E L L P+E AL+ELLM + G+ +++ I + Sbjct: 121 KGLMTNVLRIGDLSFDTESRELRLREERLPLSPREAALVELLMASPGKAVAKSRIVSAMS 180 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGSD--FIRTVHGIGYTL 216 TW+ + ++NAVE+++ LRRKL I TV G+GY + Sbjct: 181 TWETDFSANAVEIYILKLRRKLAGSGVAIVTVRGVGYAM 219 >UniRef50_Q2SPE2 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=18 Tax=Proteobacteria RepID=Q2SPE2_HAHCH Length = 226 Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 85/224 (37%), Positives = 132/224 (58%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L+IEDD + + GL + G+ VD G+ G + YD +++D LP +DG Sbjct: 1 MRVLVIEDDKDVAAYLSKGLKESGYVVDATDNGKTGLHMATTESYDLLLVDRMLPELDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++R R G + PVL+L+A + +RV+GLR G DDYL KPF+ E+ AR+EAL+RR+ Sbjct: 61 SVVRMLRAGGSKTPVLVLSALGEVDDRVQGLRAGGDDYLVKPFSFSELLARIEALLRRSQ 120 Query: 121 GQAS--NELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 Q L+ ++ +D R G + L+P+EF LLE MRN G+VL+R ++ EK+ Sbjct: 121 QQQDVVTTLKVADLEMDLLARTVKRNGLSIDLQPREFRLLEYFMRNPGQVLTRTMLLEKV 180 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTLGE 218 + + + +N ++VH+ LR K+ DF + T+ G GY L E Sbjct: 181 WDYHFDPQTNVIDVHISRLRAKIDKDFETPLLHTIRGAGYVLRE 224 >UniRef50_B4WMF1 Response regulator receiver domain protein n=2 Tax=Cyanobacteria RepID=B4WMF1_9SYNE Length = 871 Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 85/215 (39%), Positives = 127/215 (59%), Gaps = 4/215 (1%) Query: 6 IEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILRE 65 +EDD + I+ L + +D T G +G+ PYD +++D LP +DG + ++ Sbjct: 1 MEDDRALAGAIEQLLLSHHYVMDLATDGIEGRGMAEVFPYDLILMDWMLPKLDGMQLCQQ 60 Query: 66 WREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASN 125 R +G P+++LTARDA +RV GL GADDYL KPF E+ AR+ AL+RR+ G S Sbjct: 61 LRNEGNSTPIILLTARDASTDRVAGLDAGADDYLVKPFEFEELLARIRALLRRSEGIVSP 120 Query: 126 ELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTWDEEV 185 L+ G++ LDP T P+ L PKE+ALLEL +RN R+ S + +K++ +++ Sbjct: 121 VLQWGDLQLDPCSSRVTCGDVPIALTPKEYALLELFLRNPERIFSLDSLLDKVWPFEDTP 180 Query: 186 TSNAVEVHVHHLRRKLG----SDFIRTVHGIGYTL 216 T +V H+ LR+KL SD I TV+G+GY L Sbjct: 181 TVASVRTHIKGLRQKLRQVGLSDVISTVYGLGYRL 215 Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 2/119 (1%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 +L+++DD + ++ L GF ++ Q + L D ++LD+ +P + G D+ Sbjct: 571 LLVVDDDSSMLTLLQKLLQPWGFKIEILCDPSQFWQTLEKVEPDLLLLDIKMPQLSGFDL 630 Query: 63 LREWRE--KGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 + R + P+L ++A E +GADDY+ KP E+ AR+ + R+ Sbjct: 631 CQVVRSDPRWHELPILFMSAHTDEKTIQEVFSVGADDYIRKPIVAPELVARVLGWLARS 689 >UniRef50_D1BPS5 Two component transcriptional regulator, winged helix family n=3 Tax=Veillonella RepID=D1BPS5_VEIPT Length = 224 Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 83/220 (37%), Positives = 130/220 (59%), Gaps = 4/220 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+ILL+ED+ ++ L +VD G+Q + + ++ YD +++D+ +P +DG Sbjct: 1 MKILLVEDEEMLNGITAKYLRAENMTVDTCFNGQQAIDYVNTSSYDVIVMDIMMPILDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 L + R G PVL+LTA+D+L ++V L GADDYL KPF L E+ AR+ AL RR Sbjct: 61 SALAQMRNDGNTTPVLLLTAKDSLQDKVTSLNTGADDYLVKPFDLEELTARIYALARRNA 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 A N++ G + ++ +R GE +TL KEF LL L N VLSR+ I + ++ Sbjct: 121 RHAQNDIHVGPLTINVPQRTVKRDGETITLTAKEFDLLFYLASNENIVLSRQQILDHVWE 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYTL 216 +D E SN ++V++ +LR+K+ +D I+TV G+GY L Sbjct: 181 YDYESYSNLIDVYIKNLRKKIDTDENVKLIQTVRGVGYVL 220 >UniRef50_C4XS15 OmpR family two-component response regulator n=2 Tax=Desulfovibrio RepID=C4XS15_DESMR Length = 223 Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 88/223 (39%), Positives = 131/223 (58%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD I I GL + GF+VD G G + PY I+D+ LPG+DG Sbjct: 1 MRILLVEDDEKIASFILGGLRQSGFAVDHAANGPDGLHLAATEPYCVAIIDVMLPGLDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR-T 119 ++ E R + P++IL+A+ ++ +RV GL G DDYL KPF+ E+ AR++AL+RR T Sbjct: 61 QVIEELRRRKIMTPIIILSAKRSVEDRVRGLETGGDDYLSKPFSFAELLARVQALIRRST 120 Query: 120 NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 + L G + ++ R + + L+P+EFALLE MRN G+VLS+ +I E ++ Sbjct: 121 SASEPTRLTVGELSMNLLTREVSRGETAVQLQPREFALLEYFMRNPGKVLSKTMIMEHVW 180 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGSDFIR----TVHGIGYTLGE 218 + + +N V+V V LR K+ D+ R T+ G+GY L E Sbjct: 181 DYHFDPQTNLVDVLVCRLRNKIDRDYDRKMLHTLRGVGYVLKE 223 >UniRef50_A2SKN3 Two component transcriptional regulator, winged helix family n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SKN3_METPP Length = 266 Score = 157 bits (397), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 90/220 (40%), Positives = 130/220 (59%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M ILL EDD + + L G+ VD +G ++ + PYD +ILD+ L G+DG Sbjct: 38 MHILLAEDDPALAESTARALRSQGWVVDHTPRGEPVPTSVKTDPYDLLILDIGLIGIDGF 97 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + LR RE+G PVL+LTARDA+ +RV GL +GADDYL KPFAL E+ AR++ L RR Sbjct: 98 ETLRRVREQGSTLPVLMLTARDAIEDRVHGLEMGADDYLVKPFALAELIARVKVLTRRHQ 157 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + + L G + +D A + +PL L +E+A+LE L+ G V+ ++ I + + Sbjct: 158 ARQGSVLSMGGLRMDLEANRAWIGEQPLDLSAREWAVLEYLLSRVGHVVGKEQILQAISG 217 Query: 181 WDEEVTSNAVEVHVHHLRRKL--GSDFIRTVHGIGYTLGE 218 WD+ ++ NAVEV+V LR K+ IR V G GY + E Sbjct: 218 WDDALSENAVEVYVSRLRPKIEPAGLRIRAVRGFGYLVEE 257 >UniRef50_B5JZG0 Two-component transcriptional regulator, winged helix family n=1 Tax=Octadecabacter antarcticus 238 RepID=B5JZG0_9RHOB Length = 221 Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 94/218 (43%), Positives = 132/218 (60%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL++ED+ I D I L G+ + + G G E + Y A ILD+ LP MDG Sbjct: 1 MRILIVEDEARIADLIADVLQSEGYIAEIASDGEDGWEKGGTESYSAAILDIGLPRMDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +LR WR++G PV++L+A+ + ERVEG+ GADDY+ KPF + E+ ARL AL+RRT+ Sbjct: 61 SVLRNWRKEGVNFPVMLLSAKSSWNERVEGIDAGADDYMVKPFQMEELLARLRALLRRTS 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 Q L G + LD + TL G + + P EF LL L+ + G V+++ ++ E +Y Sbjct: 121 TQKMTALSVGGLQLDLLQMRITLEGRRIKVTPLEFRLLSYLLHHKGEVVAQSVLAENIYF 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE 218 D+E SNA+EV + LRRKLGSD I T G GY + E Sbjct: 181 RDQEPDSNAIEVLIGRLRRKLGSDLIETKRGFGYVIAE 218 >UniRef50_A9I4J2 Two component response regulator n=11 Tax=Burkholderiales RepID=A9I4J2_BORPD Length = 228 Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 92/218 (42%), Positives = 134/218 (61%), Gaps = 2/218 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+ED++ + + L++ GF+ D R + + + YDA+++DL LP G Sbjct: 1 MRILLVEDELEMASWLVRALAQSGFTPDHAPDARSAEALMAANEYDAIVMDLRLPDKHGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +LR+ R + R PVL+LTA+ AL +RV GL LGADD+L KPFAL E+ AR+ AL+RR+ Sbjct: 61 VVLRDMRGRDDRTPVLLLTAQGALQDRVRGLNLGADDFLTKPFALEELEARVAALVRRSR 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G+ L+ G++ D R TL G L L P+E A L L+ +G + + + K++T Sbjct: 121 GRQFPRLQCGSLAYDGESRAFTLDGNLLFLTPREHAALVALLTRSGYPVDKAQLFGKVFT 180 Query: 181 WDEEVTSNAVEVHVHHLRRKL-GSDF-IRTVHGIGYTL 216 D E +A+EV +H LR+KL GSD I TV G+GY L Sbjct: 181 QDSEANLDAIEVVLHRLRKKLAGSDVRIVTVRGLGYML 218 >UniRef50_A4AIS8 Two-component system, regulatory protein n=2 Tax=Actinobacteria (class) RepID=A4AIS8_9ACTN Length = 242 Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 90/220 (40%), Positives = 125/220 (56%), Gaps = 4/220 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 ++IL++EDD +G ++ GL G++V T G A + A +D+ LP M G Sbjct: 19 LKILVVEDDAAMGALVQHGLEDDGYAVTLVTNGVDALIATAHENFSAAAIDVMLPEMTGF 78 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +I R R++G PVL+LTARDA+ +RV GL GADDYL KPFA E AAR+ AL+RR Sbjct: 79 EICRHLRKQGNSLPVLLLTARDAVEDRVLGLDSGADDYLTKPFAFAEFAARIRALVRRDT 138 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 L+ G + LD AT AG PL + KEFALL +L + G L+R I +++ Sbjct: 139 AAGKATLKIGELALDAATVRATSAGNPLPMSSKEFALLWMLATHPGEALTRSTILSEVWG 198 Query: 181 WDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 216 + +N V+ +V +LRRKL I TV G+GY L Sbjct: 199 TTAHIDANVVDQYVSYLRRKLEPTQSGVTISTVRGVGYAL 238 >UniRef50_D2PLZ1 Two component transcriptional regulator, winged helix family n=5 Tax=Actinomycetales RepID=D2PLZ1_9ACTO Length = 236 Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 93/223 (41%), Positives = 128/223 (57%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL++ED+ + I GL GF+V+ G G YDA++LDL LPG+ G Sbjct: 1 MRILVVEDERRLARAIGHGLEDHGFTVELAHDGETGLWKGREQDYDAIVLDLMLPGLSGD 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++ R+ R G P+LILTAR GL LGADDYL KPF+ + ARL AL+RRT Sbjct: 61 EVCRQLRAAGCWTPILILTARVGAEAEAGGLNLGADDYLRKPFSYQVLIARLNALLRRTA 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 L G+++LDP +R P+ L +EF++LE LMRNAG S+ I + ++ Sbjct: 121 PARPVNLVVGDLVLDPARRTVRRGTTPIELTRREFSVLEYLMRNAGSTRSKAEILDHVWG 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTLGEK 219 D + N VEV+V +LRRK+ F IRTV G GY +G++ Sbjct: 181 ADFDREPNVVEVYVGYLRRKIDQPFGTGSIRTVRGHGYLMGDE 223 >UniRef50_A5VCP5 Two component transcriptional regulator, winged helix family n=2 Tax=Alphaproteobacteria RepID=A5VCP5_SPHWW Length = 232 Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 94/222 (42%), Positives = 128/222 (57%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L++ED+ + I GL + GF D Q +A+ A YDA++LDL LP DG Sbjct: 8 MRLLVVEDNDRMAALIADGLRRRGFVCDIALDLAQADDAMAGAQYDAIVLDLGLPDGDGI 67 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 D L R+ Q P +I TAR AL +RV GL GADDY+ KP + E+AAR+ AL+RR Sbjct: 68 DWLAGRRKYQQMPPAIIQTARGALEDRVTGLDAGADDYVVKPVEVDELAARIRALLRRPG 127 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + + G + D R A++A + L +E LLELLMR AG V+ R +IE LY+ Sbjct: 128 VRTQPVIEVGTLCFDTASRSASIADRNVDLSRREADLLELLMRRAGTVVHRDVIENALYS 187 Query: 181 WDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYTLGE 218 +++ VT NAVE V LRRKL + TV G+GY L + Sbjct: 188 FNDPVTPNAVEAAVSRLRRKLDEAAMPGTLHTVRGVGYMLKD 229 >UniRef50_A9BTX9 Two component transcriptional regulator, winged helix family n=1 Tax=Delftia acidovorans SPH-1 RepID=A9BTX9_DELAS Length = 221 Score = 156 bits (395), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 92/218 (42%), Positives = 126/218 (57%), Gaps = 2/218 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L++EDD + GI L G+ VD T G A + YD +LDL LP G Sbjct: 1 MRVLVVEDDPALRLGICRRLQAEGWQVDAVTDGEYALTATATQDYDIAVLDLGLPRRPGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++LR WR + + VLILTA D L R+ GL GADDYL KPF E+ AR+ A++RR++ Sbjct: 61 EVLRAWRAQRKALAVLILTASDGLQNRLLGLNEGADDYLAKPFEPEELVARMRAIVRRSH 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G ASN L G + + R L GE L L P+E ALLELL+ G + + I + + Sbjct: 121 GGASNLLTVGALSFNTDTRELFLQGERLALSPREAALLELLISAPGAAVPKSRIISTMSS 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIR--TVHGIGYTL 216 W+ ++NAVE+++ LRRKL +R T+ GIGY L Sbjct: 181 WEANFSANAVEIYILKLRRKLAGAGVRIVTLRGIGYVL 218 >UniRef50_C7NAQ8 Two component transcriptional regulator, winged helix family n=10 Tax=Bacteria RepID=C7NAQ8_LEPBD Length = 227 Score = 156 bits (394), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 78/220 (35%), Positives = 133/220 (60%), Gaps = 4/220 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L++ED+ + I L K + VD G + + YDA+ILD+ LP +DG Sbjct: 1 MRLLVVEDEKKLNGLITKKLEKEYYGVDSCFDGEEAIRYVEGTEYDAIILDIMLPKLDGF 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++++ R K + P+L+LTARD + ++V+GL GADDYL KPF E+ AR+ L+RR + Sbjct: 61 EVIKRIRAKKNKVPILLLTARDNIDDKVKGLDYGADDYLVKPFIFEELMARIRVLLRRNS 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G A N + N+ +D + G + L +E+++LE L+RN G++L R+ IE+ ++ Sbjct: 121 GNADNVITVANLKVDLDAKTVFRDGVLIKLSGREYSILEYLIRNKGKILPRERIEDHIWN 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTL 216 ++ E +N ++V++ +LR+K+ + I T+ G+GY L Sbjct: 181 YEYEGGTNVIDVYIRYLRKKIDDSYTPKLIHTIRGLGYVL 220 >UniRef50_Q7P0H4 Probable two-component system response regulator n=1 Tax=Chromobacterium violaceum RepID=Q7P0H4_CHRVO Length = 218 Score = 156 bits (394), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 82/214 (38%), Positives = 128/214 (59%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M +L+IEDD+ +G ++ L + +W + +D V+LDL+LP G Sbjct: 1 MHLLIIEDDLDLGRALQAALKAEAATTEWARKLADADALFEPDRFDCVLLDLSLPDGSGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++LR WR + PV+++TA L++++ GL GADDYLCKPFA+ E+ +R+ A+ RR+ Sbjct: 61 ELLRAWRARQITVPVIMITASADLSDKLAGLDDGADDYLCKPFAVSEMVSRVRAVCRRSA 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 QAS G + L P +A L G L L P+EF LL L R+ R++S+ L+ ++L Sbjct: 121 RQASEIWSLGALSLKPSAHLAWLDGSALDLSPREFRLLVELARDPSRIVSKTLLGQRLEP 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGY 214 + V +EVH+ +LRRK+G++ IRTV G+GY Sbjct: 181 LGDVVDGATIEVHLSNLRRKIGAERIRTVRGVGY 214 >UniRef50_Q2IGB7 Two component transcriptional regulator, winged helix family n=5 Tax=Cystobacterineae RepID=Q2IGB7_ANADE Length = 227 Score = 155 bits (393), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 95/221 (42%), Positives = 133/221 (60%), Gaps = 7/221 (3%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M++LL+ED+ + + GL++ G VD G +E S YD V+LD +LP +DG Sbjct: 1 MKLLLVEDEDRVARVLARGLAEEGHQVDVCGTGLGAREQATSIAYDVVLLDWSLPDLDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +LREWR +G R PVL+LTAR + E+V GLR GADDYL KPF E+ AR+EAL RR Sbjct: 61 SVLREWRSRGLRTPVLLLTARGSTGEKVTGLRAGADDYLVKPFDFDELLARIEALHRR-- 118 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G A++ G V LD +R + TL +E+ L+ L R+AG VLSR + E ++ Sbjct: 119 GGATDVSALGPVTLDARRRALVVGARSETLTAREYGLVAELARHAGEVLSRTRLIETVWG 178 Query: 181 WDEEVTSNAVEVHVHHLRRK---LGSDFIR--TVHGIGYTL 216 + E SN V+V+V +LR K LG+ +R +V G+GY L Sbjct: 179 QEFEGNSNVVDVYVGYLRTKLERLGAPGVRIESVRGVGYRL 219 >UniRef50_A5VEY8 Two component transcriptional regulator, winged helix family n=7 Tax=Proteobacteria RepID=A5VEY8_SPHWW Length = 225 Score = 155 bits (393), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 92/221 (41%), Positives = 132/221 (59%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M +LLIEDD + D + GL + G V+ GR+G + +D ++LD LP +DG Sbjct: 1 MHVLLIEDDPRVADHVGKGLREAGHIVETAADGREGLLRAAAESFDVIVLDRMLPQVDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 IL+ R G PVLIL+A + ER+ GLR G DDYL KPFAL E+ AR+EAL RR Sbjct: 61 KILQTIRATGDATPVLILSALGDVDERIRGLRAGGDDYLPKPFALSELVARVEALGRRGP 120 Query: 121 GQA-SNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 A + ELR G++ +D R T AG + L +EF +LE L+R+AGRV++R ++ E ++ Sbjct: 121 AIAEATELRSGDLAIDLLGRTVTRAGRRIDLTQREFRILEYLVRSAGRVVTRSMLLEHVW 180 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTL 216 ++ + +N ++ HV LR+KL F I TV G GY + Sbjct: 181 DYNFDPQTNIIDQHVSRLRQKLDRGFDTPLIETVRGTGYVV 221 >UniRef50_B7K2S9 Two component transcriptional regulator, winged helix family n=2 Tax=Cyanothece RepID=B7K2S9_CYAP8 Length = 635 Score = 155 bits (393), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 86/223 (38%), Positives = 128/223 (57%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+ILLIEDD I L++ ++VD G G E PYD ++LD+ LP +DG Sbjct: 1 MKILLIEDDASTSLAISQTLTQKKYAVDAVNNGETGLELAQLFPYDVILLDIMLPQLDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + R R + P+L+LTA++ + V GL GADDYL KPF E+ AR++AL RR Sbjct: 61 TVCRRLRSQQNHTPILLLTAKNHPRDCVMGLEAGADDYLVKPFDWAELLARIQALSRRGQ 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + LR N++L+ T G+ L L P E++LLEL +R+ RV SR++I ++++T Sbjct: 121 QVLPDVLRWENLVLNQKTHEVTYQGQLLHLTPTEYSLLELFLRHPQRVFSRQVIIDQIWT 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGS-----DFIRTVHGIGYTLGE 218 D+ + H+ LR+KL + + I+TV+G GY LGE Sbjct: 181 LDKVPGEETISSHIKALRQKLKAVGMTQNMIKTVYGFGYRLGE 223 Score = 42.0 bits (97), Expect = 0.015, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 2/108 (1%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 ++LI+DD + +K L+ GF+V + +Q L + D +ILDL +P G ++ Sbjct: 510 LMLIDDDPNFLEVLKATLTPWGFNVVSLSNPQQFWPVLEATNPDLLILDLEMPHFSGLNL 569 Query: 63 LREWREKGQ--REPVLILTARDALAERVEGLRLGADDYLCKPFALIEV 108 + R+ + P+L L+ D + L GAD YL K A+ E+ Sbjct: 570 CQAVRKDDRFCSVPILFLSGHDDGESIRQMLVHGADCYLPKTIAVEEL 617 >UniRef50_B2JBG7 Two component transcriptional regulator, winged helix family n=3 Tax=Cyanobacteria RepID=B2JBG7_NOSP7 Length = 228 Score = 155 bits (393), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 90/224 (40%), Positives = 125/224 (55%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL+IEDD I + L VD G +G E + YD ++LDL LP +DG Sbjct: 1 MRILIIEDDERIAKPLAEDLKHQHHVVDIACDGIEGWEYAQAGNYDLILLDLMLPRLDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + + R +L+LTARD ++ GL GADDYL KPF L E+AAR+ AL RR+ Sbjct: 61 TLCKRLRASNYNAFILMLTARDTTPNKIIGLDAGADDYLVKPFDLEELAARIRALSRRSQ 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 L HG++ LDP T +PL+L KE+ +LE ++N +VL+R I +KL+ Sbjct: 121 ETRQLILMHGDLQLDPRNCHVTYGNKPLSLTHKEYMILECFLKNPTQVLTRSAILDKLWE 180 Query: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGEK 219 +D+ V+ H+ +LR+KL DFI TV+GIGY L K Sbjct: 181 FDKLSGEETVKTHITNLRKKLRAVGSSEDFIETVYGIGYRLCPK 224 >UniRef50_C6LI81 DNA-binding response regulator DltR n=2 Tax=Clostridiales RepID=C6LI81_9FIRM Length = 248 Score = 155 bits (393), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 92/226 (40%), Positives = 133/226 (58%), Gaps = 10/226 (4%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M IL+IED++ + + + L K G+ D + G G E S YD ++LDL LPG+ G Sbjct: 20 MNILIIEDELHLQEALAASLKKEGYQTDCASDGISGLELALSDRYDVILLDLMLPGLGGY 79 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L++ R + V+IL+A+ L +++ GL GADDYL KPF + E+ AR+ A+ RR Sbjct: 80 QVLKQLRREKTESAVIILSAKSELEDKIAGLDFGADDYLTKPFQMKELFARIRAVTRRHG 139 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEP----LTLKPKEFALLELLMRNAGRVLSRKLIEE 176 +EL ++ L+ R TL+ LTL KEF L+E LMRN +V+SR I E Sbjct: 140 EVVRDELVFQDLYLNI--RTFTLSSSATSHTLTLGSKEFQLMEYLMRNPKQVISRSRITE 197 Query: 177 KLYTWDEEVTSNAVEVHVHHLRRKL---GSDF-IRTVHGIGYTLGE 218 K++ +D EV N V+V++ LR+KL G+ IR V GIGYTL E Sbjct: 198 KIWGYDSEVEYNNVDVYISFLRKKLKHTGAHVEIRAVRGIGYTLQE 243 >UniRef50_Q1NHM9 DNA-binding response regulator n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NHM9_9SPHN Length = 224 Score = 155 bits (393), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 89/220 (40%), Positives = 134/220 (60%), Gaps = 4/220 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILLIEDD + I L+ G +GRQG S +D +I+D LP M+G Sbjct: 1 MRILLIEDDAEMAGFIADALAAQGQDTVIEAEGRQGLRRAQSENFDVLIVDRMLPDMEGA 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++ + R+ G EP+L+LT+ A+ +RV+GL GADDYL KPFA+ E++ARL+AL RR Sbjct: 61 QLVSQMRDLGLSEPILMLTSLGAIEDRVKGLASGADDYLVKPFAIAELSARLDALSRRGK 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 S+ G + +D +R A G+ + L+P+EF LLE L+R +V+SR ++ E+++ Sbjct: 121 SGLSDTGACGTIKIDRVRREAWREGQRIVLQPREFELLEQLIRQQDQVVSRAMLLEQVWH 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTL 216 + + +N VE H+ LR+KL + F I+TV G+GY L Sbjct: 181 FHFDPQTNIVETHMSRLRQKLNAGFDCDPIQTVRGVGYKL 220 >UniRef50_A4U105 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U105_9PROT Length = 226 Score = 155 bits (392), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 99/222 (44%), Positives = 140/222 (63%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILLIED+ + + ++T L ++ F VD + L + YDA+ILD +LP DG Sbjct: 1 MRILLIEDEAELAELVRTYLQQLLFVVDHTASLEDARSLLETVVYDAIILDRSLPDGDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +++ R +G PVL TARD + +RV GL G DDYL KP++L+E+AARL AL+RR Sbjct: 61 ELIPRLRARGMDIPVLAATARDQVCDRVRGLDSGVDDYLIKPYSLLELAARLRALLRRPG 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 NE G+++LD + AT+AGEPL L + LL++LMR+AGRV+SR IE +LY+ Sbjct: 121 KTLKNEQVIGDIVLDAFQGTATIAGEPLLLARRLITLLDVLMRSAGRVVSRPAIETRLYS 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYTLGE 218 D+++ SNA+E + LRR L S I T+ G+GY L E Sbjct: 181 IDDQIDSNALEASISRLRRILADKGSSVTIHTIRGVGYMLAE 222 >UniRef50_C1A8B6 OmpR family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A8B6_GEMAT Length = 245 Score = 155 bits (392), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 89/230 (38%), Positives = 131/230 (56%), Gaps = 15/230 (6%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 IL++ED+ L+ G+++ L G+ V GR+G S + ++LDL LP +DG + Sbjct: 14 ILVVEDNALLAAGVRSNLEFEGYQVTVAATGREGLRLAKSRAHALIVLDLMLPDIDGFRV 73 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG- 121 LRE RE G PVLILTA ++V G R GADDY+ KPF L+E AR++AL+RR+ Sbjct: 74 LRELREHGVETPVLILTAMGDETDKVRGFRFGADDYVTKPFGLMEFLARVQALLRRSRTA 133 Query: 122 ---------QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRK 172 QA N R GNV +D R TL G + L+P+E+ LL L+R G + SR+ Sbjct: 134 KPAHDVPTVQADNTRRFGNVAIDLSTRSVTLEGSAVMLRPREYDLLVALVRRDGAIASRE 193 Query: 173 LIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLG 217 + +++ +D+ V S V+ H+ LRRKL +D ++ TV GY + Sbjct: 194 ELLREVWGYDDSVVSRTVDTHMAELRRKLETDPSEPRWLLTVRKTGYRMA 243 >UniRef50_C7Q501 Two component transcriptional regulator, winged helix family n=2 Tax=Actinomycetales RepID=C7Q501_CATAD Length = 242 Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 84/219 (38%), Positives = 134/219 (61%), Gaps = 4/219 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 R+L+++DD + G+ L GF+V+ G+ L DAV+LD+++PG+ G D Sbjct: 9 RLLVVDDDPALRRGLGRALGLSGFAVETAADGQAALAVLGGGGVDAVVLDVSMPGISGVD 68 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 ++R R +G PVL+L+A D +A+R+ GL GADDY+ KPF+ E+ R+ AL+RR Sbjct: 69 VVRRLRRQGDDVPVLMLSALDDVADRIAGLAAGADDYVVKPFSTAELELRVRALLRRGRP 128 Query: 122 QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTW 181 + +++D R T AG PL L +EF +LE+L+RNAG VL+R + ++++ + Sbjct: 129 VPHGVVAACGIVMDTDARTVTAAGCPLELTRREFDVLEVLVRNAGAVLTRDQLLDRVWGY 188 Query: 182 DEEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYTL 216 D +V S+AV+ V +LRRKL +D + TV G+G+ L Sbjct: 189 DFQVRSDAVDTVVSYLRRKLEADDRPRVLHTVRGVGFAL 227 >UniRef50_P0A4I1 Transcriptional regulatory protein cutR n=91 Tax=Actinobacteria (class) RepID=CUTR_STRCO Length = 217 Score = 154 bits (390), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 92/217 (42%), Positives = 128/217 (58%), Gaps = 1/217 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L++ED+ L+ D + TGL + +VD G E + YD V+LD LP + G Sbjct: 1 MRVLVVEDEQLLADAVATGLRREAMAVDVVYDGAAALERIGVNDYDVVVLDRDLPLVHGD 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 D+ R+ E G VL+LTA +++RVEGL +GADDYL KPFA E+ AR+ AL RRT+ Sbjct: 61 DVCRKIVELGMPTRVLMLTASGDVSDRVEGLEIGADDYLPKPFAFSELIARVRALGRRTS 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 L + LDP +R G+ + L PKEFA+LE+LMR+ G V+S + + EK + Sbjct: 121 VPLPPVLERAGIKLDPNRREVFRDGKEVQLAPKEFAVLEVLMRSEGAVVSAEQLLEKAWD 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLG-SDFIRTVHGIGYTL 216 + + +N V V V LRRKLG I TV G GY + Sbjct: 181 ENTDPFTNVVRVTVMTLRRKLGEPPVIVTVPGSGYRI 217 >UniRef50_A9HHL1 Probable two-component response regulator transcription regulator protein n=1 Tax=Roseobacter litoralis Och 149 RepID=A9HHL1_9RHOB Length = 223 Score = 154 bits (390), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 88/223 (39%), Positives = 132/223 (59%), Gaps = 6/223 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M ILLIED+ + D ++ GL+ G+SVD G G E YD V+LDL LPG+ G+ Sbjct: 1 MNILLIEDEARVADFVRRGLAAEGWSVDHAANGEDGLELAAQNNYDVVLLDLMLPGIQGQ 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + R+ R + + P+++LTA D E+VEGL++GADDYL KPF E+ AR+EAL RR Sbjct: 61 GVCRKLRARKSKTPIMMLTALDGSEEKVEGLKIGADDYLPKPFDFDELVARIEALHRRAT 120 Query: 121 GQASNE----LRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEE 176 G ++ + +G + D + +P+ L KE LL+LL+ + GRVLSR+ I Sbjct: 121 GYTADVSDTIITNGAITFDRASLEVNVEKKPIELTKKERDLLQLLLTSNGRVLSRERILN 180 Query: 177 KLYTWDEEVTSNAVEVHVHHLRRKLGSDFIR--TVHGIGYTLG 217 ++ + + +N V+V+V LRRKLG + R T+ +GY + Sbjct: 181 TVWGLNADPLTNVVDVYVGRLRRKLGQEGQRIVTLRNVGYRMA 223 >UniRef50_B4DAQ3 Two component transcriptional regulator, winged helix family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAQ3_9BACT Length = 230 Score = 154 bits (390), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 87/221 (39%), Positives = 133/221 (60%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL++EDD I + G + G+ + + G G + L +AP+DA ++DL LP MDG Sbjct: 7 MRILVVEDDSRIASFVAKGFKQNGYLAEISSDGEDGLQKLQTAPFDAAVIDLMLPKMDGL 66 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++ R+ +++L+A+ ++ ++V LR GADDYL KPFA+ E+ AR+EA++RR + Sbjct: 67 SLIERIRKGKTPVAIVVLSAKHSVEDKVRCLRSGADDYLQKPFAISELLARVEAIVRRVS 126 Query: 121 GQASNE-LRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 +A E L V +D IA G + L+P+EFALLELL+RN GR L++ + E+L+ Sbjct: 127 REAEVERLESAGVEIDLLAHIAKREGRRIDLQPREFALLELLVRNRGRALTKMQLLERLW 186 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTL 216 + + +N V+V V LR KL F I T+ GIGY Sbjct: 187 DYSFDPQTNVVDVLVCRLRNKLDRGFDTKLIHTLRGIGYVF 227 >UniRef50_B4VMC7 Response regulator receiver domain protein n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VMC7_9CYAN Length = 362 Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 125/222 (56%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL++ED+ + I GL++ + VD G G + + YD ++LD+ LP +D Sbjct: 1 MKILVVEDNPTLAQTIVAGLTQQNYVVDLAQDGETGLDNALAYNYDLILLDINLPHLDSI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + R R+ G P+++L+A + V GL GADDY+ KP + +AAR+ AL+RR Sbjct: 61 SLCRRLRQAGNTSPIVLLSASATTQDMVAGLDAGADDYIIKPCPVEGLAARVRALLRRNR 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 ++ L+ GN+ +DP T G+PL L PKE+ LL LLM + R+ S+ I EKL+T Sbjct: 121 DASTPTLQWGNLEIDPSTCEVTCLGQPLRLSPKEYGLLYLLMSSPTRIFSQDYIIEKLWT 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTLGE 218 + + V+ HV LRRKL D I TV+G GY L + Sbjct: 181 FGDPPNRETVKAHVKGLRRKLKKAGVGDIIETVYGFGYRLKD 222 >UniRef50_C6XSY6 Response regulator receiver n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XSY6_PEDHD Length = 224 Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 80/220 (36%), Positives = 138/220 (62%), Gaps = 6/220 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M++LL+ED+ ++ + ++ GFS D Q ++ + ++ YD V+LD+TLP G Sbjct: 1 MKLLLVEDEPVLVEEMEQYFRSHGFSCDQAVSFSQAEDKILNSRYDVVVLDITLPDGTGM 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 D++ + R++ ++IL+AR++L++++EGL LGADDYL KPF L E++AR+ AL RR Sbjct: 61 DLIADIRQRDAETGIVILSARNSLSDKLEGLDLGADDYLTKPFFLEELSARINALYRRKT 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY- 179 + + E+ + ++P ++ GEP++L KEF +L + N RVLS+ I E L+ Sbjct: 121 LRGTVEILFDDFTIEPLAKLFFYLGEPVSLTKKEFEMLVYFVVNKNRVLSKASISEHLWG 180 Query: 180 -TWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGY 214 +D+ V + + +H+ +LR+KL G +I+TV+GIGY Sbjct: 181 DHFDQHVNFDTLYMHLTNLRKKLTRLSGKHYIKTVYGIGY 220 >UniRef50_B8G869 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G869_CHLAD Length = 245 Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 86/220 (39%), Positives = 132/220 (60%), Gaps = 4/220 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 + +++IED++ I + ++ GL+ G V ++GR + + D VILDL LP +DG Sbjct: 17 LHVVVIEDELTIAESLRVGLTYEGMRVTVASEGRSALQIVEEQGADLVILDLMLPDIDGM 76 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + R R ++ P++ILTAR + ERV+GL+LGADDY+ KPF+ E+ AR+ A+ RR Sbjct: 77 VVCRRLRAWSEKLPIIILTARGEVQERVKGLQLGADDYIVKPFSFDELLARVNAIFRRAG 136 Query: 121 -GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 + L+ + L+ R TL G + L P EFALLE MR+ RV +R+ + +++ Sbjct: 137 ISRPVTVLQVAGLSLNLETREVTLHGRAIELTPTEFALLEQFMRHPRRVFTRQTLLSRVW 196 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGS---DFIRTVHGIGYTL 216 + SN VEVH+ +LR K+G IRTV+G+GYTL Sbjct: 197 GFTYVGDSNIVEVHISNLREKIGDHERKLIRTVYGVGYTL 236 >UniRef50_Q1R1E2 Two component heavy metal response transcriptional regulator, winged helix family n=11 Tax=Proteobacteria RepID=Q1R1E2_CHRSD Length = 223 Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 93/223 (41%), Positives = 132/223 (59%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+ED+ D + GL + G+ V+ G G+ + A ++ +ILD+ LPG+DG Sbjct: 1 MRILLVEDESKTADYLARGLGEAGYRVEVARDGLDGRHLIEEADFELIILDVMLPGLDGW 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++LR R GQ PVL LTARDA+ RV+GL LGADDYL KPF+ +E+ AR+ L+RR Sbjct: 61 ELLRLIRRHGQ-VPVLFLTARDAVEYRVKGLELGADDYLVKPFSFVELLARVRTLLRRGP 119 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + + ++ +D KR T L L KEFALL+LL+ G VLSR LI +++ Sbjct: 120 LRERERFQVADLHMDVLKRRVTRGETRLALTNKEFALLQLLLEREGEVLSRTLIASEVWG 179 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIR----TVHGIGYTLGEK 219 + + +N VEV V LR K+ F R T G+GY L ++ Sbjct: 180 MNFDSDTNVVEVAVRRLRAKVDDPFTRRLIHTERGMGYVLEDR 222 >UniRef50_Q8DHN5 Two-component response regulator n=2 Tax=Chroococcales RepID=Q8DHN5_THEEB Length = 229 Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 88/222 (39%), Positives = 128/222 (57%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M++L+IEDD I + L+ + V+ G + L + +D +ILDL LPGMDG Sbjct: 1 MKVLVIEDDRTIAGLVAESLAHQQYIVEIAYDAETGLDYLEATAFDLLILDLGLPGMDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + R++G P+LILTARD +++V GL GADDY+ KPF L E+ AR+ AL+RR Sbjct: 61 SFCQTIRQRGHSLPILILTARDTSSDKVMGLDAGADDYMVKPFDLPELLARVRALLRRKP 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + L G ++LDP + T + L L PKE+A+LE+L+R+ R+LSR I + + Sbjct: 121 LPFAPILHWGALILDPDRAKVTYNHQELHLTPKEYAILEVLLRHGSRILSRSAIMDYAWP 180 Query: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLG 217 DE V+VH+ LR KL ++ I TV+G GY L Sbjct: 181 LDEMPGEETVKVHLRSLRHKLKAVGAPANLIETVYGFGYRLN 222 >UniRef50_A9I724 Two-component system response regulator n=5 Tax=Bordetella RepID=A9I724_BORPD Length = 236 Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 95/220 (43%), Positives = 132/220 (60%), Gaps = 6/220 (2%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 R+L++EDD+ I + L GF D GR L +DA++LD+ LPG+DG Sbjct: 11 RVLVVEDDLTIAGNLYRFLEVNGFVPDVAYDGRTALRMLQDQRFDAMVLDVGLPGLDGYQ 70 Query: 62 ILREWR-EKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L+ R E+ Q PVLILTARDAL +++EG GADDYL KPFAL EV ARL AL+ R Sbjct: 71 VLQTLRAERRQAIPVLILTARDALDDKLEGFSHGADDYLTKPFALAEVQARLLALIHRAQ 130 Query: 121 GQASNELRH-GNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 G + +R G + D R +AG+P+ L K ++E L+R+ GR++SR+ +E L+ Sbjct: 131 GAVVDAVREFGPLQFDGRTRAVLVAGQPVRLTRKSGQIVEALLRDPGRIVSREELESVLW 190 Query: 180 TWDEEVTSNAVEVHVHHLRRKL---GSDFIRTVHGIGYTL 216 DE + +A+ +H LRR L G D I TVHGIG+ L Sbjct: 191 G-DEPPSPDALRSQMHLLRRALADAGFDGIETVHGIGWRL 229 >UniRef50_Q6AQP4 Probable two-component system response regulator (Pho family) n=1 Tax=Desulfotalea psychrophila RepID=Q6AQP4_DESPS Length = 224 Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 86/221 (38%), Positives = 130/221 (58%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M++LLIEDD+ I D I+ GL + GF+VD GR+G Y A I+D+ LP DG Sbjct: 1 MKLLLIEDDLTIADLIQKGLEEAGFAVDSCHNGREGLSHALKGAYSAAIIDIMLPERDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 I+ E R G+ PVLIL+A+ ++ +R++GL+ G DDY+ KPF+ E+ R++AL+RR Sbjct: 61 SIIEEMRAAGKETPVLILSAKQSVDDRIQGLQRGGDDYMIKPFSFGELLVRVQALIRRDQ 120 Query: 121 GQA-SNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 + L G + +D ++ G + L KE+ALL + NAG LS+ I EK+Y Sbjct: 121 KHSPQTRLSIGPLEMDLLRQQVCRDGGQIELPAKEYALLLYMAENAGTALSKTSILEKVY 180 Query: 180 TWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 216 ++ + +N V+V V LR K+ G I+T+ G+GY L Sbjct: 181 GYNFDPQTNVVDVLVCRLRAKIDKGFGQQLIQTIRGVGYVL 221 >UniRef50_A8ZNT0 Two-component transcriptional regulator/diguanylate cyclase (GGDEF) n=1 Tax=Acaryochloris marina MBIC11017 RepID=A8ZNT0_ACAM1 Length = 792 Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 86/221 (38%), Positives = 132/221 (59%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL++EDD L+ + ++T L + ++V+ T G+ E + + YD ++ D+ LP +DG Sbjct: 1 MRILVVEDDELVAEALQTLLVDLNYAVELATDGQTAAELVEAFEYDLILSDVMLPRLDGV 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + ++ R +G + P+L+LT +D+ +R GL GADDY+ KPF E+AAR+ AL+RR Sbjct: 61 GLCQQLRSQGYQIPILLLTGKDSSHDRAIGLDAGADDYVVKPFDPEELAARVRALLRRGE 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 L+ N+ LDP L L PKE+AL+EL+MRN RV S +I E ++T Sbjct: 121 AIKPPILKWENLQLDPRACEVKYQDVLLKLTPKEYALVELMMRNTRRVFSCGMILEHIWT 180 Query: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTL 216 +++ AV H+ LR+KL +D I TV+GIGY L Sbjct: 181 YEDTPGEEAVRTHIKGLRQKLKASGAPTDLIETVYGIGYRL 221 Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 2/123 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RI++++DD I + + G V + Q E L ++P D ++LD+ +P + G D Sbjct: 489 RIMIVDDDPQILETVAALCKPWGLEVIGLDEPTQFWETLTNSPPDLLLLDVEMPEIGGID 548 Query: 62 ILREWREKGQRE--PVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 + R R Q E P++ LTA + GADD++ KP E+ R+ + RT Sbjct: 549 LCRVVRNDIQWEQLPIIFLTAHTEADVVNQVYASGADDFISKPIVGPELVVRILNRLERT 608 Query: 120 NGQ 122 Q Sbjct: 609 RLQ 611 >UniRef50_Q0VPT5 DNA-binding heavy metal response regulator, putative n=4 Tax=Gammaproteobacteria RepID=Q0VPT5_ALCBS Length = 222 Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 88/215 (40%), Positives = 125/215 (58%), Gaps = 1/215 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LL+EDD L+ +G+ L K GFSVD R+ + Y A ILDL LP +G Sbjct: 1 MRLLLVEDDYLLTNGLSAQLEKAGFSVDTARTAREARHLGQQESYRAGILDLGLPDGNGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 D+L++WR PVLILTAR ++V GL+ GADDYL KPF E+ ARL A++RR+ Sbjct: 61 DVLKQWRTHKVSFPVLILTARGDWQDKVNGLKAGADDYLAKPFQTEELIARLHAIVRRSE 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEP-LTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 G+ + L G LD ++ E +L EF LL LM G+V S++ + ++LY Sbjct: 121 GRIMDTLTAGRFELDENRQTLRAGDETEHSLTGTEFRLLRCLMSRPGQVFSKEQLLDQLY 180 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGY 214 + D+ + N +E +V LR+ +G D I+T G GY Sbjct: 181 SIDDIPSENVIEAYVRRLRKLVGPDTIKTRRGQGY 215 >UniRef50_A5N1L7 Predicted transcriptional regulator n=8 Tax=Bacteria RepID=A5N1L7_CLOK5 Length = 228 Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 91/223 (40%), Positives = 133/223 (59%), Gaps = 7/223 (3%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL++ED+ + + + L + +SVD G G + S YD +ILD+ LP MDG Sbjct: 1 MRILMVEDEKYMAEAVAQILKRNHYSVDLEYNGESGLDCGLSGIYDIIILDIMLPKMDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L+E R G PV++LTA+ ++V GL GADDYL KPF E+ ARL AL RR + Sbjct: 61 SLLKELRRNGIETPVILLTAKGETEDKVRGLDSGADDYLAKPFEAEELLARLRALGRRKS 120 Query: 121 GQASNE--LRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 + NE L++G++ LDP + + L KE LLELL++ G ++S+ +I EKL Sbjct: 121 -ELVNEGILKYGDMKLDPLNLRLSCRKQEFKLTLKECQLLELLIKGKGIIISKNVIVEKL 179 Query: 179 YTWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTLG 217 + ++ +V N VEV+V LR+KL + FI+TV G GY +G Sbjct: 180 WGYETDVEYNNVEVYVSFLRKKLRNIKSNVFIQTVRGAGYVIG 222 >UniRef50_C9XWL0 Transcriptional regulatory protein qseB n=1 Tax=Cronobacter turicensis RepID=C9XWL0_CROTZ Length = 245 Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 86/216 (39%), Positives = 130/216 (60%), Gaps = 1/216 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 ++ILLIEDD+ +G+G++ + GF V W + L + ++LDL LP DG Sbjct: 21 VKILLIEDDLDLGNGVRIAFADQGFDVIWVRRKEDALHQLDVCVPELILLDLGLPDGDGM 80 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++ R++ + PV+ILTAR L +R+ GL GADDYL KPF L E+ AR+ AL RR+ Sbjct: 81 SLMAYVRQRFKGLPVIILTARGTLQDRLSGLDAGADDYLVKPFVLAELLARVRALARRSY 140 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G + + + L R T++ + L E+ALLE LM RVL+R +EE+L+ Sbjct: 141 GFENEAIEIRGLSLHVPTRRVTVSARHVELTASEYALLETLMLRPDRVLTRGFLEERLFG 200 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTL 216 E + SNA++VH+ +LRRK+G ++RTV G+GY + Sbjct: 201 AKENL-SNALDVHMGNLRRKIGDGYVRTVRGVGYVI 235 >UniRef50_B2V7S5 Two component transcriptional regulator, winged helix family n=2 Tax=Sulfurihydrogenibium RepID=B2V7S5_SULSY Length = 220 Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 88/218 (40%), Positives = 131/218 (60%), Gaps = 2/218 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LL+EDD +G IK GL + GF VD + G +E L + Y+ ++LDL LP DG Sbjct: 1 MRLLLVEDDKTLGRLIKKGLEEEGFLVDLVSNGATAEEYLNTENYEVIVLDLMLPEKDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 IL R +G PVLILTA+ ++ ++++GL GADDYL KPF E+ AR++AL+RR + Sbjct: 61 SILESLRNRGICTPVLILTAKGSVEDKIKGLNAGADDYLAKPFDFQELVARIKALIRRYH 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + + G+V +D + + G+ + L E LL +L + R+LS+ IE+ LY Sbjct: 121 NVSKGMVSFGDVEVDLVNQNVKVKGKDVELTAMELKLLMMLALKSNRILSKTYIEQSLYG 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLG--SDFIRTVHGIGYTL 216 W+ SN +EV + LR+KL +I+TV G+GY L Sbjct: 181 WEGSPDSNVIEVLISRLRKKLDPKGKYIKTVKGLGYIL 218 >UniRef50_D1B4N2 Response regulator receiver n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B4N2_SULD5 Length = 224 Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 83/225 (36%), Positives = 140/225 (62%), Gaps = 11/225 (4%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSA---PYDAVILDLTLPGM 57 M+IL++EDD I +K GL + FSV+ G++ALY A PYD +ILDL + G+ Sbjct: 1 MKILIVEDDEGIASFLKQGLEEELFSVEL---CDNGEDALYLAQMNPYDMIILDLMIKGV 57 Query: 58 DGRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMR 117 G + ++ RE+ P+++L+A+ ++++V L LGADDYL KPF+ E+ AR+ +R Sbjct: 58 QGDVVCQKLREQKLHTPIIVLSAKSTISDKVGLLHLGADDYLTKPFSFEELLARIHVQLR 117 Query: 118 RTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEK 177 + N + L+ ++ L+P + T + E ++L KE+ LLE LMR+ G ++ K++EE+ Sbjct: 118 KQNDKEP-LLKVADLELNPVTKSVTRSKEVISLTAKEYMLLEYLMRHKGAIIEEKMLEEQ 176 Query: 178 LYTWDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTLGE 218 L++ ++ + SN V V+++ LR K+ +F I+T +GYTL E Sbjct: 177 LFSSEQSINSNMVSVYMYRLRSKIDKNFELKLIKTHRNLGYTLNE 221 >UniRef50_B8DZ94 Two component transcriptional regulator, winged helix family n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8DZ94_DICTD Length = 224 Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 84/224 (37%), Positives = 132/224 (58%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYS--APYDAVILDLTLPGMD 58 M+IL+IED+ +G +K GL K G+ VD G + K + + YD VILD+ LP +D Sbjct: 1 MKILIIEDEKKLGTALKKGLEKEGYVVDLAFDGEEAKYIIENNFEGYDLVILDIMLPKID 60 Query: 59 GRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR 118 G + ++ R K + P+L+LTA+D + +++ GL GADDYL KPF+ E+ AR+ AL+RR Sbjct: 61 GISLCKDLRAKNFQAPILMLTAKDKVEDKILGLESGADDYLVKPFSYEELLARIRALLRR 120 Query: 119 TNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 L+ ++ LD + + L KEFA+LE LMRN R++S++ I + Sbjct: 121 PKNLMPTVLKVKDISLDTVSKRVFRGDIEILLTNKEFAILEYLMRNVNRIISKEQIISHV 180 Query: 179 YTWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTLGE 218 + ++ + SN VE H+ +LR+KL + I T+ G+GY + E Sbjct: 181 WGYESDTLSNVVEAHIKNLRKKLERKRDENIIETIRGMGYRIKE 224 >UniRef50_UPI00016B25CE two component transcriptional regulator, winged helix family protein n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B25CE Length = 224 Score = 154 bits (388), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 81/224 (36%), Positives = 131/224 (58%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPG--MD 58 MRIL++ED+ + I L G+++D +G + PYDA+I+D +PG D Sbjct: 1 MRILIVEDEKKLARAISRTLKNEGYAIDIEYNSSEGYAMASTQPYDALIIDRMMPGDFSD 60 Query: 59 GRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR 118 G D+L++ R+ G P ++LTA ++++ GL GADDYL KPFA+ E+ ARL A++RR Sbjct: 61 GLDMLKKLRKDGISTPAIVLTALGETSQKITGLDAGADDYLAKPFAIDELLARLRAILRR 120 Query: 119 TNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 L+ G + +D R + + L KE+ALL+ LM+++G+ LS++ I E + Sbjct: 121 PKKAQPTILKVGKLHIDTTNRTVEFDNKKIDLTAKEYALLQYLMKSSGQTLSKEQIMEHV 180 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTLGE 218 + +D ++ N VE ++ LR+K+ +I+TV GIGY L E Sbjct: 181 WNFDADILPNTVEAYIKALRKKIDEKYKVKYIKTVRGIGYRLEE 224 >UniRef50_B1ZUL4 Two component transcriptional regulator, winged helix family n=2 Tax=Verrucomicrobia RepID=B1ZUL4_OPITP Length = 226 Score = 153 bits (387), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 88/221 (39%), Positives = 131/221 (59%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL+IED+ + I L++ G G +G +++ P D V+LDL LPG+DG Sbjct: 1 MRILVIEDEAQLARHIVRALTRHGHVASAELDGEKGLQSVLRDPPDLVVLDLNLPGVDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR-T 119 +L RE VLILTAR + RV+GL+ GADDYL KPF+L E+ AR+EAL RR Sbjct: 61 AVLARLREANSPARVLILTARSEVEHRVKGLKAGADDYLPKPFSLDELVARIEALGRRGA 120 Query: 120 NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 A++ L+ ++ +D R + A P+ L P+EF +L++LM+ GRV SR + E+++ Sbjct: 121 TPTAADFLKVADLQMDVQHRRVSRAARPVALSPREFDVLQVLMQEPGRVFSRTELCERVW 180 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTL 216 D + + VE+ + LR+K+ S F I T+ IGYT+ Sbjct: 181 QRDHQYDTRTVEIFIARLRKKVDSGFNAPLIHTLRSIGYTI 221 >UniRef50_Q2G7V2 Two component transcriptional regulator, winged helix family n=1 Tax=Novosphingobium aromaticivorans DSM 12444 RepID=Q2G7V2_NOVAD Length = 227 Score = 153 bits (386), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 88/225 (39%), Positives = 131/225 (58%), Gaps = 9/225 (4%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL+IED++ + + GL++ G V T G G E S +D ++LD+ LP MDG Sbjct: 1 MRILIIEDEIELAGALHRGLTQEGCKVTLATDGSTGLELAASLAFDFILLDVNLPDMDGF 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR-- 118 ++ RE+G P++++TARD +A+R+ GL+ GADDYL KPFA E+ AR++A+ RR Sbjct: 61 EVCARLREQGSTMPIIMVTARDEIADRIRGLKGGADDYLTKPFAFEELLARMDAIKRRMA 120 Query: 119 -TNG---QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLI 174 + G Q + G++ DP T AG P+ L KE +L LLM + G V+SR I Sbjct: 121 PSQGGKVQPDGRITVGDLHFDPRTMTLTRAGTPVQLTVKEMGVLRLLMESPGTVISRTEI 180 Query: 175 EEKLYTWDEEVTSNAVEVHVHHLRRK---LGSDFIRTVHGIGYTL 216 ++ +++ +N VEV++ LRRK LG + V G GY L Sbjct: 181 LRAVWGMEDDPLTNIVEVYLSRLRRKLHALGPPVVENVRGFGYRL 225 >UniRef50_B7K7W8 Multi-component transcriptional regulator, winged helix family n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7K7W8_CYAP7 Length = 799 Score = 153 bits (386), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 84/224 (37%), Positives = 130/224 (58%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M++LL+EDD + + IK L + V+ T G+ G E YD ++LDL LP +DG Sbjct: 1 MKLLLVEDDQNLAEVIKEALKSQHYLVELATDGQTGLELAEMFEYDLIMLDLMLPKLDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++ R+KG P+L++T +D + +V+ L GADDYL KPF + E+ AR+ AL+RR Sbjct: 61 QFCQQRRKKGDLTPILLVTGQDDASCKVKALDAGADDYLVKPFNIQELLARVRALLRRGG 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 ++ L+ G + L+P T GE + L KE+ +LEL +RN R+ S+ + E L++ Sbjct: 121 LSSTPLLQWGPLNLNPSSCQVTYEGELIHLTAKEYGILELFLRNRNRIFSQSALIEHLWS 180 Query: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGEK 219 +DE T NAV + LR+KL + I TV+G+GY L + Sbjct: 181 FDEAPTENAVRTQIKSLRQKLKKAGASPNLIETVYGLGYRLNKN 224 Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 2/113 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +I++++DD + I+ L GFS+ + + L D +ILD+ +P + G + Sbjct: 499 KIMIVDDDPNLLKLIQFHLEPWGFSITLLEDPKLFWDILERTTPDLLILDVEMPEISGIE 558 Query: 62 ILREWREKGQRE--PVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARL 112 + + R P+L L+ EG + GADDY+ KP E+ R+ Sbjct: 559 LCQVVRNDPHWHHLPILFLSGHRESKFVSEGFQAGADDYIYKPIVDSELVTRI 611 >UniRef50_B2IZ13 Sensor protein n=11 Tax=Cyanobacteria RepID=B2IZ13_NOSP7 Length = 989 Score = 153 bits (386), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 85/221 (38%), Positives = 128/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL++EDD L + L+ ++V+ T G + + + YD ++LD+ LP +DG Sbjct: 1 MKILIVEDDGLNAYTLTNLLTNQNYAVEVATDGDAAWDCIQAYDYDLILLDVVLPKLDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + R+ R + P+L++T R++ E+ GL GADDYL KPF + E+ AR+ AL+RR Sbjct: 61 SLCRKIRSNNLQMPILLMTGRNSSHEKAIGLDAGADDYLVKPFDIEELVARIRALLRRPA 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + L G + LDP A A L L PKEFALLEL +RN+ RV S +I E L++ Sbjct: 121 VTSPPVLESGKLRLDPSSCEAVYARNLLPLTPKEFALLELFLRNSRRVFSCGMILEHLWS 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGS-----DFIRTVHGIGYTL 216 +++ AV H+ LR+KL + D + TV+GIGY L Sbjct: 181 YEDTPQEEAVRTHIKGLRQKLKAVGAPGDLVETVYGIGYRL 221 Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 2/113 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +IL+++DD I ++T LS G Q E L + D +ILD+ LP ++G + Sbjct: 397 KILVVDDDPQIQALLQTLLSPWGLRAIALENPLQFWETLEAVAPDMLILDVELPYINGIE 456 Query: 62 ILREWREKGQRE--PVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARL 112 + R R P+L LT + +GADD++ KP E+ R+ Sbjct: 457 LCRLVRNDSHWSELPILFLTVHSDAEMVNQVFSIGADDFVSKPIVGPELVTRI 509 >UniRef50_A9H3V0 Two component Transcriptional regulator n=96 Tax=Proteobacteria RepID=A9H3V0_GLUDA Length = 258 Score = 152 bits (385), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 88/219 (40%), Positives = 125/219 (57%), Gaps = 4/219 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 R+LL+EDD I + L GF V G G A S +D +I+D LP MDG Sbjct: 36 RVLLVEDDGKIAQEVAEELESRGFRVSRAETGPDGLSAGISGLFDVMIVDRMLPEMDGLT 95 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 ++ R + PVL+L+A A+ +RV GL+ G DDYL KPFA+ E+AAR+EALMRR N Sbjct: 96 LIESLRGRQVSTPVLVLSALSAVDDRVSGLKAGGDDYLTKPFAMEELAARIEALMRRPNN 155 Query: 122 QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTW 181 L G + +D +R T GEP+ L P+EF LLE LMR +VL+R ++ E ++ + Sbjct: 156 TRETMLHVGPLSMDLIERTVTRDGEPIDLLPREFRLLEYLMRRPNQVLTRTMLLEDVWNY 215 Query: 182 DEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 216 +N V+VH+ LRRK+ I+++ G G+ L Sbjct: 216 RFIPQTNLVDVHIGKLRRKIDDPGAQPLIQSIRGTGFML 254 >UniRef50_B4B6S6 Multi-component transcriptional regulator, winged helix family n=1 Tax=Cyanothece sp. PCC 7822 RepID=B4B6S6_9CHRO Length = 638 Score = 152 bits (385), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 83/220 (37%), Positives = 129/220 (58%), Gaps = 4/220 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD L + LS ++VD G+ G + + YD +LD+ +P +DG Sbjct: 1 MRILLMEDDPLTRTVLTQTLSNHHYNVDVAKDGKSGLQLAQTYNYDLFLLDVVVPVLDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + ++ R +G +EP+++LTA+D+ ++++ GL GADDY+ KP L + AR+ AL+RR N Sbjct: 61 SVCQQLRSQGLQEPIVLLTAKDSSSDQIIGLDAGADDYIIKPVNLETLMARIRALLRRKN 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 S+ + GN+ L+ EP+ L KE+ALLEL + N R+ +R++I E+L+ Sbjct: 121 ASLSSVIEWGNLQLNLSNCEVNCENEPIHLTAKEYALLELFLVNPKRIFNRRVILERLWD 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYTL 216 E V H+ LR+KL SD I TV+G+GY L Sbjct: 181 IGESPGEETVSTHIKCLRQKLKNAGVSDPIETVYGLGYRL 220 Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 2/104 (1%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGM--DGR 60 IL+I+DD+ + + ++ +++ T ++ + +ILDL DG Sbjct: 394 ILMIDDDLALAERVRIEAQTWNLNLEIATDLTVARQIILQKTPAIIILDLNFDSASEDGF 453 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFA 104 +L E + P++I T R++L +R++ RLGA +L KP A Sbjct: 454 TLLEELNQSRPNLPIIIFTGRESLNDRIKVARLGAKAFLHKPLA 497 >UniRef50_A6EUI4 DNA-binding heavy metal response regulator, putative n=1 Tax=Marinobacter algicola DG893 RepID=A6EUI4_9ALTE Length = 222 Score = 152 bits (385), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 79/218 (36%), Positives = 129/218 (59%), Gaps = 1/218 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M++L++ED+ ++ + I L+K F+VD G++ + ++ Y A+ILD+ LP +G Sbjct: 1 MKVLIVEDNAVLAEKISVWLAKENFTVDVAQNGKEANFFVETSSYQAIILDIGLPDENGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++++WR G+ E +LILTAR ERVEGL GADDYL KPF E+ ARL A++RR + Sbjct: 61 SLMQKWRSNGKDEAILILTARSNWTERVEGLNAGADDYLPKPFEFDELKARLSAIIRRKD 120 Query: 121 GQASNELRHGNVMLDPGKR-IATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 G+ ++++ +L+ R + T + L E+ LL+ +R+ RV S+ + E LY Sbjct: 121 GRTTDKIAVDGFLLNSTYRTLTTPDHKEFRLTATEYRLLQCFLRSPDRVFSQDDLVESLY 180 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLG 217 + T N V+V++ LR+ LG I+T+ G GY Sbjct: 181 NIERCPTRNVVQVYIARLRKILGKSRIKTLRGQGYYFA 218 >UniRef50_B1VIL1 Two-component system response regulator n=3 Tax=Corynebacterium RepID=B1VIL1_CORU7 Length = 256 Score = 152 bits (384), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 87/222 (39%), Positives = 128/222 (57%), Gaps = 6/222 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 +++L+++D+ I D IK L GF V+ G+ E + DA ILD+ +PGMDG Sbjct: 30 VKVLVVDDEDNISDLIKVSLKFQGFDVETADNGQTALEIAETYRPDAFILDVMMPGMDGF 89 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT- 119 +L + RE G P L LTA+D + +R+ GL +GADDY+ KPF+L EV RL ++RR Sbjct: 90 TLLNKLREAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVA 149 Query: 120 --NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEK 177 + + S+ + + ++ LD T AGE + L P EF LL LM NA VLS+ I + Sbjct: 150 KDDSEESSLITYEDITLDDDMHEVTKAGEVVDLSPTEFQLLRYLMVNAEVVLSKSKILDH 209 Query: 178 LYTWDEEVTSNAVEVHVHHLRRKLGSD---FIRTVHGIGYTL 216 ++ +D N VE +V +LRRK+ + I TV G+GY L Sbjct: 210 VWNYDFGGDGNVVESYVSYLRRKIDTKEPRLIHTVRGVGYVL 251 >UniRef50_Q2T1W7 DNA-binding response regulator n=22 Tax=Proteobacteria RepID=Q2T1W7_BURTA Length = 272 Score = 152 bits (384), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 89/223 (39%), Positives = 124/223 (55%), Gaps = 7/223 (3%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 R+L IEDD + + I L GF+VDW GR G S YD + LD LPG+DG Sbjct: 50 RVLTIEDDEITANEIVGELKSRGFTVDWVANGRDGMARAISDDYDVITLDRMLPGVDGLT 109 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 IL R G R PVL+L+A + ERV GLR G DDYL KPF E+ ARLE L+RR+ Sbjct: 110 ILTTMRSIGVRTPVLMLSALGDVDERVRGLRAGGDDYLTKPFDTEEMTARLEVLLRRSQA 169 Query: 122 QAS---NELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 + L G + LD R G + L P E+ +LE +MR+AG+ ++R ++ E + Sbjct: 170 SPAPFETTLAVGPLTLDLISRKVYRDGAEIALLPTEYRVLEFMMRHAGQTITRMMLFEAV 229 Query: 179 YTWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTLG 217 + + + +N ++VH+ LR+K+ + IRTV G GY L Sbjct: 230 WGYHFDPGTNLIDVHMGRLRKKIDPPDATPMIRTVRGAGYILS 272 >UniRef50_B0S0W9 Two-component response regulator n=9 Tax=Clostridiales RepID=B0S0W9_FINM2 Length = 238 Score = 152 bits (384), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 87/221 (39%), Positives = 135/221 (61%), Gaps = 5/221 (2%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 I +EDD I + I L+ G+ F + K LYS+ D +ILD+ LPG G +I Sbjct: 18 ICCVEDDKSIRELIIYALNNEGYDAMGFGDYGEFKSTLYSSSIDLIILDIMLPGKSGLEI 77 Query: 63 LREWR--EKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 L+E R EK + PV++LTA+ +++ GL GADDY+ KPF+++E+ AR+ AL+RR++ Sbjct: 78 LKEIRNNEKTKNIPVMMLTAKTTEYDKIVGLDSGADDYMIKPFSIMELLARVRALLRRSS 137 Query: 121 -GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 + +++ + N+ LD KR ++ GE + L KEF LL L+ N G+VL+R+ I K++ Sbjct: 138 LSKTKSKIIYKNIELDYDKRTVSVDGENVELTYKEFELLYYLLSNVGKVLTRENIMTKIW 197 Query: 180 TWDEEVTSNAVEVHVHHLRRKL--GSDFIRTVHGIGYTLGE 218 +D E S V+VH+ LR+KL S I+T+ +GY GE Sbjct: 198 GFDFEGESRTVDVHIATLRQKLKNASSIIKTIRNLGYKAGE 238 >UniRef50_C7LY45 Two component transcriptional regulator, winged helix family n=2 Tax=Actinobacteria (class) RepID=C7LY45_ACIFD Length = 236 Score = 152 bits (383), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 85/222 (38%), Positives = 130/222 (58%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L+++D+ + +K GLS GF+VD + G G + APYD ++LD+ LPG++G Sbjct: 1 MRLLIVDDEENLLASLKRGLSAEGFAVDTASDGTTGLDMARHAPYDCIVLDIMLPGVNGF 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + RE+ P+L+LTA+D + E L GADD L KPF+ + AR+ AL+RR Sbjct: 61 KFTQLLREERNWTPILMLTAKDGEYDEAEALDTGADDVLKKPFSFTVLVARIRALLRRNV 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 L+ G++ LDP T + L +EF+ LELL+RN G VL ++ I ++ Sbjct: 121 ESHPPILQAGDLTLDPASHRVTRGNVTIDLTTREFSFLELLLRNKGHVLRKQDIIAHVWD 180 Query: 181 WDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTLGE 218 +D E SN VEV++ +LR+K+ G+ I T+ G+GY L E Sbjct: 181 YDFEGDSNIVEVYIGYLRKKIDVPFGTKAITTIRGVGYRLEE 222 >UniRef50_D0XW93 Two component transcriptional regulator, winged helix family n=1 Tax=Caulobacter segnis ATCC 21756 RepID=D0XW93_9CAUL Length = 231 Score = 152 bits (383), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 92/218 (42%), Positives = 133/218 (61%), Gaps = 5/218 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR LLIED++ +G+ L K GF+VD F G A S YD VILD+ L +G Sbjct: 1 MRALLIEDNVRLGEATTRSLVKAGFTVDLFDTLEDGWHAWRSVTYDVVILDIMLGRENGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 D+L + R G R VL+LTA ++ +RV+GL GADDYL KPFA+ E+ ARL AL RR + Sbjct: 61 DLLAQARAAGLRTQVLMLTALGSVDQRVQGLERGADDYLVKPFAIEELVARLRALGRRPD 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 A + LR+G++ D G R + L L E +LE +R+ RV+++ + + L++ Sbjct: 121 LTA-DVLRYGDIEYDQGAREICVGEARLPLSRGESIVLERFLRHPDRVVTKAQLGDSLHS 179 Query: 181 WDEEVTSNAVEVHVHHLRRK---LGSDF-IRTVHGIGY 214 D++ T N+++VHVH +RRK LG+D IR + G+GY Sbjct: 180 LDQDYTDNSIQVHVHRVRRKMAELGADVTIRALRGLGY 217 >UniRef50_C5NUZ8 Response regulator ArlR n=4 Tax=Bacteria RepID=C5NUZ8_9BACL Length = 223 Score = 152 bits (383), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 133/223 (59%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL++ED+ + I L + +SVD G + + + + YD +I D+ +P +DG Sbjct: 1 MKILVVEDERDLNRIITKHLKRNNYSVDSCFDGEEALDFVGYSDYDLIITDIMMPNVDGY 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + ++ RE PV++LTA+D L +++ GL GADDY+ KPF E+ AR+ LMRR Sbjct: 61 EFIKRLRESKNNTPVIMLTAKDTLEDKIVGLDSGADDYIVKPFEFDELFARIRVLMRRNY 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G A+N ++ +++LD K+ T GE + L KE+ +LE LM+N +LSR I ++ Sbjct: 121 GLATNVIQIDDIVLDISKKQVTRNGENIGLTGKEYEVLEYLMKNKESILSRDQILNHVWD 180 Query: 181 WDEEVTSNAVEVHVHHLRRKL--GSD--FIRTVHGIGYTLGEK 219 +D + SN V+V + ++R+KL G+D I T G+GY + EK Sbjct: 181 YDYDGASNIVDVIIKNIRKKLDNGTDKTIIYTKRGLGYFVKEK 223 >UniRef50_UPI0001C16F99 Multi-component Transcriptional regulator, Winged helix family n=2 Tax=Nostocaceae RepID=UPI0001C16F99 Length = 1329 Score = 152 bits (383), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 84/221 (38%), Positives = 130/221 (58%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL++EDD LI + L+ ++V+ G+ + + + YD ++LD+ LP +DG Sbjct: 1 MKILVVEDDALIACTLSNFLTYQNYAVEVANDGKTAWDLVETYEYDLILLDIVLPKLDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + ++ R G+R P+L+LT RD+ ++ GL GADDY+ KP E+ AR+ AL+RR Sbjct: 61 SLCKKIRSSGRRVPILLLTGRDSSHDKAIGLDAGADDYVVKPCDEEELVARVRALLRRGG 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + L G + LDP T + L+L PKE+ALLELLMRN RV S +I + L++ Sbjct: 121 VTSQPVLEWGGLRLDPSSCEVTYQQDQLSLTPKEYALLELLMRNNRRVFSCGMILDHLWS 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGS-----DFIRTVHGIGYTL 216 +++ +AV H+ LR KL + D + TV+GIGY L Sbjct: 181 YEDTPGEDAVRTHIKGLRMKLKAAGAPHDLVETVYGIGYRL 221 Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/207 (22%), Positives = 93/207 (44%), Gaps = 19/207 (9%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 ++IL+++DD+ + ++ L+ G + Q D +ILD+ +PGM G Sbjct: 382 IKILVVDDDLKTLELLQVLLTPWGLEIVTLNYPEQFWSTWEKIHPDMLILDIEMPGMSGI 441 Query: 61 DILREWR--EKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVA--------- 109 ++ + R ++G+ P+L LT + +GADD++ KP + E+ Sbjct: 442 ELCKMIRSHDQGREVPILFLTVHSNAEIVNQVFSVGADDFVSKPIIISELVNRILNRLER 501 Query: 110 ARLEALMRRTNGQASNELRHGN-VMLDPGKRIATLAGEPLTLKPKE------FALLELL- 161 RL +M R +N++ N +++ + + E + + ++ A + LL Sbjct: 502 VRLLKIMERNRYAKTNQINENNKFIVESYHNLVEVYPEAILIVSQDDLVFVNSAAVRLLG 561 Query: 162 MRNAGRVLSRKLIEEKLYTWDEEVTSN 188 + +AG +L +K IE EE+ N Sbjct: 562 VNSAGELLGKKFIEFVHPQHREEIEEN 588 >UniRef50_B5WI25 Two component transcriptional regulator, winged helix family n=1 Tax=Burkholderia sp. H160 RepID=B5WI25_9BURK Length = 240 Score = 152 bits (383), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 87/221 (39%), Positives = 130/221 (58%), Gaps = 6/221 (2%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RIL++EDD + + T L F+V+ + G G + +DAV+LD LP +DG Sbjct: 16 RILVVEDDDRVRLEVSTALEDYDFAVEGVSSGHAGLLRALNGDFDAVVLDRMLPDVDGLS 75 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALM-RRTN 120 IL R G PVLIL+A A+ ERV GLR G DDYL KPF +E+ ARL AL+ RR++ Sbjct: 76 ILSTLRNVGTETPVLILSALSAVDERVRGLRAGGDDYLTKPFDSLELTARLNALLRRRSS 135 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + +N L G+++LD G AGE + LKP+E+ LL+ LM + + ++R ++ E ++ Sbjct: 136 SEQANVLSVGDLVLDMGTHRVRRAGESIELKPREYELLKYLMLHTEQPVTRAMLFESVWN 195 Query: 181 WDEEVTSNAVEVHVHHLRRKLG-----SDFIRTVHGIGYTL 216 + V +N +++H+ LRRK+ S I TV +GY L Sbjct: 196 YHFNVHTNVIDMHIGQLRRKISLNGRFSLMIHTVRNVGYVL 236 >UniRef50_B9ZMZ7 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=B9ZMZ7_9GAMM Length = 238 Score = 152 bits (383), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 91/218 (41%), Positives = 129/218 (59%), Gaps = 4/218 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 +R+++IEDD+ + I + G VD + G G L D ++DL LPGMDG Sbjct: 3 LRVVVIEDDLALRSQIAEEMENNGCRVDTASDGDTGLYLLTEYHCDIAVVDLGLPGMDGL 62 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 D++R+ RE + P+LILTARD ++VEGL GADDYL KPF + E+ ARL AL RR+ Sbjct: 63 DVIRKAREVKPQLPILILTARDRWQDKVEGLEAGADDYLTKPFHIQELVARLRALARRSL 122 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 +L+ G +++D L EP++L E+ LL L+R GRVLS++++ + LY Sbjct: 123 QAGREQLQFGPLVIDTATDDVRLNDEPVSLTTFEYRLLLTLVRQPGRVLSKEVLADYLYE 182 Query: 181 WDEEVTSNAVEVHVHHLRRKL---GS-DFIRTVHGIGY 214 DE+ SN +EV + LRRKL GS I T+ G GY Sbjct: 183 HDEDRESNVIEVLIGRLRRKLDPGGSLGLIETLRGRGY 220 >UniRef50_C1SIE7 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SIE7_9BACT Length = 240 Score = 152 bits (383), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 135/224 (60%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL+++D++ + D +K+ L K +SVD G G + ++ Y +ILD+ LP MDG Sbjct: 14 MKILIVDDEVQLVDELKSILEKSKYSVDTAVSGDSGLDKIFDNEYSLIILDVMLPVMDGF 73 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 IL RE PVL+LTA+ +++R++GL G+DDYL KPFA+ E+ AR+ AL+RR N Sbjct: 74 CILEAVREASITTPVLMLTAKSDVSDRIKGLDKGSDDYLVKPFAVSELLARVRALLRRDN 133 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY- 179 + L+ +++L+ G PL L KE+ + E L+ N RV+++ + ++ Sbjct: 134 LDKNPFLKVADIVLNTVSCDVVKDGHPLKLTRKEYMVFEYLLYNKNRVVTKAALAGHVWG 193 Query: 180 -TWDEEVTSNAVEVHVHHLRRKLGSD---FIRTVHGIGYTLGEK 219 +DE SN ++VH+ +LR+K+G + IRT GIGY + ++ Sbjct: 194 DEFDEFNASNFIDVHIKNLRKKIGDENHLIIRTKRGIGYIINDQ 237 >UniRef50_Q2RYR0 Response regulator receiver domain protein n=2 Tax=Rhodothermaceae RepID=Q2RYR0_SALRD Length = 247 Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 87/217 (40%), Positives = 130/217 (59%), Gaps = 5/217 (2%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 +LL+ED+ + ++ GL++ G+ V W GR+G + D V+LD+ LP + G ++ Sbjct: 7 LLLVEDEPDVASFVQQGLNEEGYEVSWVEAGRRGLDYARQGGIDLVLLDIRLPDLSGLEV 66 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQ 122 R P+L+LTA DA+ +RV GLR GADDYL KPFA E+ AR+EAL+RR + Sbjct: 67 CERLRLHRPELPILMLTALDAVEDRVRGLRAGADDYLPKPFAFDELLARIEALLRRVDRP 126 Query: 123 A-SNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTW 181 + + G ++LDP R T GE + L P EF LL LM G+ LSR I ++++ Sbjct: 127 SEPGRVEDGPLVLDPAARTCTFDGEEVDLTPTEFDLLAFLMARHGQALSRDTIHQEVWGH 186 Query: 182 DEEVTSNAVEVHVHHLRRKL---GSDF-IRTVHGIGY 214 D + +N ++V+V+++RRKL G + I TV GIGY Sbjct: 187 DFDRGTNLIDVYVNYVRRKLDEVGCEAPIETVRGIGY 223 >UniRef50_Q2SKY7 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=2 Tax=Bacteria RepID=Q2SKY7_HAHCH Length = 223 Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 91/220 (41%), Positives = 128/220 (58%), Gaps = 4/220 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L+IED ++ + GL G+ VD G +G YD +ILD+ LP M+G Sbjct: 1 MRLLVIEDAEILRQSLVIGLGDAGYVVDAAADGEEGLWLASEQGYDLIILDIMLPHMNGF 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++L R G VL+LTARD + +RV GLR GADDYL KPF E+ AR+EAL+RR Sbjct: 61 ELLDRLRTLGADSLVLMLTARDEVEDRVLGLRSGADDYLVKPFDFDELLARIEALLRRRA 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G ASN L G + ++ + +++G P++L P+E+ALLE L N RV+SR+ IE K+Y Sbjct: 121 GCASNLLEIGELTINLHSKQVSVSGVPVSLPPREYALLECLALNRHRVVSRQEIEHKIYD 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYTL 216 E SN V+ + LR+ + FI T G GY + Sbjct: 181 DKIEPMSNVVDSAISSLRKMIDHKDRPSFILTRRGHGYQI 220 >UniRef50_Q2YB58 Two component transcriptional regulator, winged helix family n=3 Tax=Betaproteobacteria RepID=Q2YB58_NITMU Length = 233 Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 92/225 (40%), Positives = 128/225 (56%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 +RIL+IEDD I + L G SVD G G + +D ++LDL LPG DG Sbjct: 7 VRILIIEDDRAIASNLYDFLEARGHSVDAAADGITGLHLAVTQQFDGILLDLGLPGADGI 66 Query: 61 DILREWREKGQRE-PVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 + R+ R++ + PVL+LTARD L ++++G GADDYL KPFAL EV ARL A+ +R Sbjct: 67 TLCRKLRQEAHLDTPVLMLTARDTLEDKLKGFDCGADDYLVKPFALKEVEARLVAMHKRR 126 Query: 120 NGQ-ASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 G+ S L ++ DP AG + L PK LL ++M GRV SR+ +E ++ Sbjct: 127 KGKVTSRTLETEDLSFDPKTLTIRFAGANVKLPPKCIGLLAVIMSEPGRVFSRRELESEV 186 Query: 179 YTWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTLGEK 219 + D + TS+ + H+H LRR L G D I TVHG+GY L + Sbjct: 187 W-GDVQETSDTLRSHMHELRRALTRAGGYDPIETVHGLGYRLSTR 230 >UniRef50_B9P733 Predicted protein n=13 Tax=cellular organisms RepID=B9P733_POPTR Length = 239 Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 96/232 (41%), Positives = 133/232 (57%), Gaps = 16/232 (6%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LL+EDD+++ GIK GLS G++VDW + E L +D ++D+ LPG+DG Sbjct: 1 MRLLLVEDDVMVASGIKLGLSDAGYAVDWVGSAERALEVLAQEAFDLAVIDIGLPGIDGL 60 Query: 61 DILREWREKGQRE---PVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMR 117 ++ R R PVLILTARDAL +RV+GL GADDY+ KPF L E+ ARL AL+R Sbjct: 61 ELTRRLRSSAVESSAMPVLILTARDALQDRVQGLDQGADDYMVKPFELPELLARLRALLR 120 Query: 118 RTNGQASNELRHGNVMLDPGKRIATLAGE-----------PLTLKPKEFALLELLMRNAG 166 R+ S L G + LD R A P+ L P+E+ +LE L+ +A Sbjct: 121 RSQAATSAVLSFGPIELDTAGRRAGARQPAQDDESEGKLLPIDLGPREWTVLEYLLIHAP 180 Query: 167 RVLSRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFI--RTVHGIGYTL 216 + S+ + + L WD E+T NAVEV+V LR KL + R++ G GY L Sbjct: 181 KPASKDKLLQALTGWDREITPNAVEVYVSRLRSKLEPHGVALRSIRGFGYRL 232 >UniRef50_B4WME0 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WME0_9SYNE Length = 236 Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 84/230 (36%), Positives = 129/230 (56%), Gaps = 16/230 (6%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M +L ED+ I ++ GL + GF V++ G E YD ++LD+ +PG DG Sbjct: 1 MHVLFAEDEPKIASFVQIGLKEQGFVVEYCDHGDIAYEKAIQNEYDVILLDIMMPGKDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 IL+ R+ G+ PV++LTARD L +R++GL LGADDY+ KPF + E+ AR+ A++RR+ Sbjct: 61 FILKNLRQVGRNTPVILLTARDELDDRLQGLNLGADDYIAKPFFVEELIARIHAVVRRSA 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEP------------LTLKPKEFALLELLMRNAGRV 168 G+ N + G LD R T E + L +EF LLE LMR+ GRV Sbjct: 121 GEQPNLVTVGPFKLDRITRTVTCQSEAQSESQSEGTQQVVELTTREFNLLEYLMRSPGRV 180 Query: 169 LSRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGY 214 +R + E ++ +D ++N V+V + LR+K+ +I +V G+GY Sbjct: 181 FTRTQMLEHVWGYDFNPSTNVVDVCIQRLRKKIDMKGNERWIESVRGVGY 230 >UniRef50_A1RNU1 Two component transcriptional regulator, winged helix family n=23 Tax=Gammaproteobacteria RepID=A1RNU1_SHESW Length = 224 Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 83/219 (37%), Positives = 127/219 (57%), Gaps = 3/219 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M++LL+ED+ ++ + + L G+ D + + + YD VILD+ LP +G Sbjct: 1 MKLLLVEDNPMLVNELAKQLKLAGYVTDITDKALEADYLIKETQYDCVILDIGLPDGNGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++L WR +G PV++LTAR E+VEG GADDYL KPF E+ AR++AL+ R + Sbjct: 61 ELLEGWRNQGISTPVIMLTARSQWHEKVEGFNAGADDYLGKPFHAQELLARIQALIHRAH 120 Query: 121 GQ---ASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEK 177 G+ S +L +G V LD ++ +A L EF LL++ + + ++LS+ + +K Sbjct: 121 GRLNTPSKQLTYGGVTLDETEQTVKVADHLYELTAMEFRLLKIFLMSPKKLLSKAQLTDK 180 Query: 178 LYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTL 216 LY +D+E SN VEV+V HLR+KLG I T G GY Sbjct: 181 LYQFDDEKESNVVEVYVTHLRKKLGKTAIETRRGQGYIF 219 >UniRef50_B2J1E6 Multi-component transcriptional regulator, winged helix family n=2 Tax=Nostoc punctiforme PCC 73102 RepID=B2J1E6_NOSP7 Length = 787 Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 86/223 (38%), Positives = 128/223 (57%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILLIEDD ++ + L++ ++V+ G+ G E + YD ++ D+ LP +DG Sbjct: 1 MRILLIEDDEVLASVLLQSLTQQHYAVEIAEDGQIGWEYAQATNYDLILTDVVLPKLDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + + R G P+L++TA+D ++R+ GL GADDYL KP L E+ AR+ AL+RR + Sbjct: 61 TLCQRLRSNGCSTPILLITAKDETSDRIRGLDAGADDYLIKPLNLRELQARVRALLRRGD 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 L G + LDP T + L L PKE++LLE+L+RN RV SR I E L+T Sbjct: 121 TPRPPVLEVGALRLDPSICEVTYDNQVLDLTPKEYSLLEILLRNPLRVFSRGDIIEHLWT 180 Query: 181 WDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTLGEK 219 +D+ V+ H+ LR KL D+I V+G+GY L + Sbjct: 181 FDDPPQEETVKSHIKGLRHKLKVVGAVDWIENVYGLGYRLKSQ 223 Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 2/121 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 + +L+++DD LI + L G + + E L S D +ILD+ +P + G Sbjct: 500 VNVLVVDDDPLILAALGPMLEPWGMRITGLDDPLRFWEVLQSTAPDLLILDVEMPHISGI 559 Query: 61 DILREWREKGQRE--PVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR 118 ++ + R Q + P++ LTA + + G DDY+ KP E+ AR+ + R Sbjct: 560 ELCQAVRTDPQWQELPIVFLTAHREMETVQQVFAAGGDDYVVKPVVGAELLARITHRLER 619 Query: 119 T 119 + Sbjct: 620 S 620 >UniRef50_B4WSX3 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WSX3_9SYNE Length = 640 Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 128/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL++DD + D + L K + VD T G +E + YD +ILD+ LP ++G Sbjct: 27 MRILLVDDDAALMDILAEQLIKQRYVVDIATDGESAEECVNLFSYDFIILDMGLPDIEGI 86 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + + R++ P+L+LTA D +V+ L GADDY+ KPF E+ AR+ AL RR N Sbjct: 87 SLCQRLRQQKITSPILMLTAEDNSKAKVKALNAGADDYVVKPFDFEELFARIRALRRRDN 146 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + L+ G++ +DP PL + PKE+ +LEL +R+ +V S I + L++ Sbjct: 147 NTLAAVLQQGDLRVDPNTFEVFYQDRPLRVTPKEYTMLELFLRHPNQVFSIDAIIDNLWS 206 Query: 181 WDEEVTSNAVEVHVHHLRRKLGS-----DFIRTVHGIGYTL 216 +++ + +AV HV LR+KL + DFI+TV+G+GY L Sbjct: 207 FEDPPSEDAVRTHVKGLRQKLKAGGAPKDFIQTVYGLGYRL 247 Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 ++++ I+DD + ++T LS GF + + L S D +++D+ +P +G Sbjct: 512 LKVVAIDDDPQVLALLQTILSPWGFQTTALENADRLFDTLESVRPDLLLIDVEMPETNGL 571 Query: 61 DILREWR--EKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR 118 +I R R E+ Q+ P+L L+ D + + +GADD++ K E+ RL ++R Sbjct: 572 EICRVLRADERWQQLPILFLSVHDEDHTQHQAFNVGADDFISKTTMATELPTRLINRLKR 631 Query: 119 T 119 T Sbjct: 632 T 632 >UniRef50_B8H4H9 Two-component response regulator protein n=9 Tax=Proteobacteria RepID=B8H4H9_CAUCN Length = 242 Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 98/233 (42%), Positives = 133/233 (57%), Gaps = 19/233 (8%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDA----------VIL 50 M IL++EDD + D ++ GL G+ V G G EA + DA ++L Sbjct: 1 MHILVVEDDTRVADFLERGLKAEGYKVRVARDGVSGLEA--ARDLDAMLRELDQRGVILL 58 Query: 51 DLTLPGMDGRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAA 110 DL LP M G ++ + R G PVL+LTA A+ +RV GLR GADDYL KPF+ E+ A Sbjct: 59 DLMLPKMTGMEVCQTLRASGVLTPVLMLTALGAVDDRVTGLRTGADDYLVKPFSFEELLA 118 Query: 111 RLEALMRRTNGQ---ASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGR 167 R+EAL+RR+ Q A+ L+ GNV LD + GE + L +E ALLEL + + GR Sbjct: 119 RIEALLRRSRDQRAPANRTLKAGNVELDRTTMRVSRDGEEVVLTARELALLELFLSSPGR 178 Query: 168 VLSRKLIEEKLYTWDEEVTSNAVEVHVHHLRRK----LGSDFIRTVHGIGYTL 216 VLSR+ I ++ DE+ +N V+V+V LR K L S FI TV G+GY L Sbjct: 179 VLSRERILSNVWGVDEDPLTNVVDVYVRRLRAKIDPPLASSFITTVRGLGYRL 231 >UniRef50_C4ZLE7 Two component transcriptional regulator, winged helix family n=1 Tax=Thauera sp. MZ1T RepID=C4ZLE7_THASP Length = 225 Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 91/218 (41%), Positives = 134/218 (61%), Gaps = 10/218 (4%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LL+EDD + +GI L G V+ G + L + YD V+LD+ LPG+ G Sbjct: 1 MRLLLVEDDPALAEGIAEFLRGQGDEVEVEGDGMRADRLLQNNGYDFVLLDVGLPGLGGY 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +++R R++GQR PV+++TARDAL +R+ GL LGADDYL KPF L E++AR+ A+ RR Sbjct: 61 ELVRRIRKRGQRMPVIVITARDALDDRIYGLDLGADDYLVKPFELAELSARMRAVQRRGG 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G A L G + LD R+A L G P+TL +E+ +LE L+R GR ++R+ ++ Sbjct: 121 G-AGARLAFGALALDLDGRLAELDGAPMTLSGREWEVLEALVRADGRTVTRENLQ----- 174 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSD--FIRTVHGIGYTL 216 + + NA+EV + LR ++ + IRTV G GY L Sbjct: 175 --GDGSGNALEVCISRLRPRVEAAGLLIRTVRGFGYRL 210 >UniRef50_B7CCX3 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCX3_9FIRM Length = 228 Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 86/220 (39%), Positives = 136/220 (61%), Gaps = 6/220 (2%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 R+L++EDD I +K L+ + + F G+ + L D ILDL LPGM+G D Sbjct: 3 RVLIVEDDENIRQLLKLTLASFNYELVDFENGKDAYDYLQDNKVDLAILDLMLPGMNGYD 62 Query: 62 ILREWREKGQRE--PVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 IL+ R K + PV+IL+A+D +++ GL LGADDYL KPF+++E+AAR+ +L+RR+ Sbjct: 63 ILKFIRSKASLKDLPVIILSAKDKELDKIMGLDLGADDYLTKPFSVLELAARIRSLLRRS 122 Query: 120 NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 HG + +D KRI T+ EP+ L KEF LL+ L +N GR +SR+ + +++ Sbjct: 123 KKDERLIQIHG-LCIDLDKRIVTIREEPVELTYKEFELLKYLAKNEGRAVSREELINQIW 181 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGSDF---IRTVHGIGYTL 216 +D S ++VH++ LR+KLG+++ I++V +GY L Sbjct: 182 GYDFIGESRTLDVHINSLRKKLGNEYAHWIQSVRQVGYRL 221 >UniRef50_A3K9L3 Two-component system regulatory protein n=1 Tax=Sagittula stellata E-37 RepID=A3K9L3_9RHOB Length = 233 Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 86/219 (39%), Positives = 126/219 (57%), Gaps = 3/219 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LL+ED + D I G +VD AL YD +ILD+ LP G Sbjct: 11 MRLLLVEDTADVADAIVASFGHRGDAVDHVNSVEDALGALAVQDYDVIILDIGLPDGLGT 70 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 DIL R +G PV++LTAR + +RV L GADDYL KPF L E+ AR+ A++RR + Sbjct: 71 DILSSLRSRGTPTPVMMLTARSNIEDRVAALDKGADDYLIKPFDLRELHARVRAMLRRQD 130 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 S + G++ DP + G P+ L +EF +LE+L+ N RV+ + + E++Y Sbjct: 131 VDRSGVIEFGDITFDPAGLTVEVKGRPVALVRREFNVLEILLANRERVVPKDKLLERMYA 190 Query: 181 W-DEEVTSNAVEVHVHHLRRKLGSD--FIRTVHGIGYTL 216 + DE+V+ NAVE++V LR+KL + I+T+ G+GY L Sbjct: 191 FNDEDVSPNAVELYVGRLRKKLCNSQITIKTLRGLGYQL 229 >UniRef50_Q5QUA5 Response regulator (CheY, wHTH domains) n=1 Tax=Idiomarina loihiensis RepID=Q5QUA5_IDILO Length = 221 Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 76/219 (34%), Positives = 132/219 (60%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LL+EDD + +GI GL++MG+ V+ Q + AL + ++ I DL LP + Sbjct: 1 MRLLLLEDDKTLAEGIIKGLNRMGYMVELAMNLSQAESALKTDQFELAIFDLGLPDGNAV 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++++ R+ GQ P+++LTA D + +V L GA+DY+ KPF L E+ AR+ +R+ N Sbjct: 61 SLIKKLRKAGQPVPIVVLTAWDDVDTKVLALNEGANDYVVKPFELRELEARVRVQVRKAN 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 Q ++ + G++ +D + + + L E+ LL+ L + G+++S++ +E Y Sbjct: 121 LQLNDVINCGDLSVDIASQQCRFQRKLINLTRLEWILLKQLALHVGKIVSKEQLETACYG 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK 219 WD + SN++EVH+HHLR+KL I T+ G+GY L ++ Sbjct: 181 WDSDNESNSLEVHIHHLRKKLNPSLITTIRGLGYLLKDE 219 >UniRef50_Q81I47 Two-component response regulator n=76 Tax=Firmicutes RepID=Q81I47_BACCR Length = 232 Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 84/224 (37%), Positives = 138/224 (61%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L++ED+ + + I + + F VD G G YDA++LD+ +PGMDG Sbjct: 10 MRLLVVEDNASLLESI-VQILRDEFEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 68 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +++++ R++ PVL LTARD+L +RV+GL G DDY+ KPF E+ AR+ AL+RR+ Sbjct: 69 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 128 Query: 121 GQASNE-LRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 + + +R+ + L + + G+ + L K++ LLE L++N+G++L R+ I ++++ Sbjct: 129 SLTTQQTIRYKGIELFGKDKDVQVDGKGMKLSLKQYELLEYLVQNSGKILMREQIFDRVW 188 Query: 180 TWDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYTLGEK 219 +D + T VEV+VHHLR+KL I+TV GIGY L E+ Sbjct: 189 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYILKEQ 232 >UniRef50_C4ZBN4 Response regulator n=31 Tax=Bacteria RepID=C4ZBN4_EUBR3 Length = 257 Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 88/223 (39%), Positives = 130/223 (58%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 +R+L++ED+ I D + L G+ VD G++ E + S YD ++LDL LPGMDG Sbjct: 32 LRLLIVEDEKQICDMVAKSLYAAGYEVDTCYDGKEALECILSENYDLIVLDLNLPGMDGM 91 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++L+E R+ VLIL+AR +A++VEGL GA+DY+ KPF L E+ AR+ +L RR Sbjct: 92 ELLKELRKYNDETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRKF 151 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 Q L+ G + D KR A GEP+ L KE +LE L+ N GR +S++ + E ++ Sbjct: 152 VQNDICLKCGEIKFDTIKREAYAKGEPVPLTRKENGILEYLLINIGRPVSQEELIEHVWD 211 Query: 181 WDEEVTSNAVEVHVHHLRRK----LGSDFIRTVHGIGYTLGEK 219 + S A+ VH+ LR+K LG D I G GY + E+ Sbjct: 212 ATADSFSGAIRVHMSSLRKKLKAELGYDPILNKVGEGYKIREE 254 >UniRef50_Q44006 Transcriptional activator protein czcR n=330 Tax=cellular organisms RepID=CZCR_RALME Length = 225 Score = 150 bits (379), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 87/220 (39%), Positives = 125/220 (56%), Gaps = 5/220 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L++ED+ + ++ GLS+ GF VD G G YD +ILD+ LPGMDG Sbjct: 1 MRVLVVEDEPRTAEYLQKGLSESGFVVDIANNGGDGLHMAEETDYDVIILDVMLPGMDGW 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +++ R K + PVL LTA D +A+RV G LGADDYL KPFA E+ AR+ +R++ Sbjct: 61 TVIKSIRSKSE-TPVLFLTALDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLRQST 119 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + S LR ++ +D R + L +EF+LL LLMR G VLSR I +++ Sbjct: 120 SKESERLRIADLDIDVLGRRVFRGTTRIELTNQEFSLLHLLMRRRGEVLSRTTIASQVWG 179 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTL 216 + + +N V+V + LR K+ F I TV G+GY L Sbjct: 180 VNFDTDTNVVDVAIRRLRSKVDDPFDQKLIHTVRGMGYVL 219 >UniRef50_C9YE22 Response regulator mprA n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YE22_9BURK Length = 248 Score = 150 bits (379), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 96/228 (42%), Positives = 134/228 (58%), Gaps = 17/228 (7%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 +L++EDD L+ DG+ L G SV + G Q + L S +D V+LDL LP +DG + Sbjct: 19 LLIVEDDELLRDGLCAQLVHAGHSVSSASDGAQAQGLLESTRFDGVVLDLGLPVVDGIAV 78 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT--- 119 L+ R++ PVLILTARD + +RV+GL GADDYL KPF + E+ ARL+A++RR+ Sbjct: 79 LQWIRQRLAALPVLILTARDGVDDRVQGLNAGADDYLTKPFNMAELLARLQAMLRRSRLP 138 Query: 120 --NGQASNELRHG-NVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEE 176 G + H N+ LDP +A L +P+ L +E++LL LL+ N G+V+ R E+ Sbjct: 139 AFGGSLEVQSTHSRNLRLDPVLPLAWLGDDPMELTHREWSLLSLLVNNMGQVVGR---ED 195 Query: 177 KLYTWDE------EVTSNAVEVHVHHLRRKLGSD--FIRTVHGIGYTL 216 L W SNA+EV+VH LRRKL IR V G+GY L Sbjct: 196 VLSVWQTAPLEGGAAGSNALEVYVHRLRRKLTDSGLNIRNVRGLGYML 243 >UniRef50_C7PAJ7 Two component transcriptional regulator, winged helix family n=3 Tax=Sphingobacteriales RepID=C7PAJ7_CHIPD Length = 266 Score = 150 bits (379), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 82/226 (36%), Positives = 133/226 (58%), Gaps = 8/226 (3%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RIL++ED++ + + +K GL + GF VD GR GK S YD VILDL LP +G + Sbjct: 41 RILVVEDEIKVANTVKKGLEENGFEVDVAYDGRMGKSLAASNNYDLVILDLNLPHANGYE 100 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + R K P+++LTA + ++++ LGADDYL KPF E+ AR+ ++R Sbjct: 101 VCEVIRRKNNAIPIIMLTALGGMDDKMQAFELGADDYLVKPFDFRELMARIRVFLKRAGS 160 Query: 122 --QASNELR--HGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEK 177 Q +N+ + G++ +D K+ T G+ + L KE+ LLE L + G+V+S+ +I EK Sbjct: 161 EVQENNQYKIVIGDLEIDREKKEVTRGGKKIALTAKEYQLLEFLALHKGKVISKLVIAEK 220 Query: 178 LYTWDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTLGEK 219 ++ D + +N +EV+++ LR+K+ DF + T G+GY L E+ Sbjct: 221 VWDIDFDTGTNVIEVYMNFLRKKIDKDFDNKLLHTKTGMGYYLAEE 266 >UniRef50_Q3Z755 DNA-binding response regulator n=2 Tax=Dehalococcoides RepID=Q3Z755_DEHE1 Length = 225 Score = 150 bits (379), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 83/223 (37%), Positives = 137/223 (61%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M++LLIEDD + I +GL + G++V+W + G+ G E + +D +ILD+ LP +DG Sbjct: 3 MKLLLIEDDANLAKVITSGLEENGYAVNWESNGKLGAEMALAYTFDVIILDIMLPELDGF 62 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + + R G + P+++LTAR A++V GL GADDYL KPF+ E+ ARL AL+RR N Sbjct: 63 AVCHKIRSNGNQTPIIMLTARYQEADKVNGLNCGADDYLVKPFSFPELLARLRALLRRAN 122 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 Q S ++ + L+ R A G + L KE+ +LE L+ N ++++ +IEE ++ Sbjct: 123 NQHSPSIKLRKLTLNTVDRRAFYDGREIELTAKEYGILEYLVLNKNCIITKNMIEEHIWE 182 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYTLGEK 219 + ++ SN +EV + +R+KL ++ I+TV G+GY + +K Sbjct: 183 SESDIFSNVIEVLISRIRKKLDNNNKNSLIKTVKGLGYIIEDK 225 >UniRef50_A8F5U3 Two component transcriptional regulator, winged helix family n=1 Tax=Thermotoga lettingae TMO RepID=A8F5U3_THELT Length = 228 Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 132/222 (59%), Gaps = 4/222 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 ++L++ED+ + + IK L K G+ V Q + + YD +++D+ LPG++G + Sbjct: 7 KVLIVEDNEDLLNSIKEFLLKEGYDVSCAVDAEQAFDMVIEDHYDCLVVDVLLPGINGFE 66 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + RE P+LILTA DA+ ++V GL GADDYL KPF E+ AR+++L+RR+N Sbjct: 67 FVEHLRESLINVPILILTALDAINDKVRGLSCGADDYLTKPFDFRELLARIKSLIRRSNI 126 Query: 122 QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTW 181 E+ + L+ R T+ L + +EFALLEL +RN G V SR+ I EK++ Sbjct: 127 TKGEEINFKGLKLNSRSRQVTVEDTVLKMSKREFALLELFLRNPGIVFSREEIMEKVWEN 186 Query: 182 DEEVTSNAVEVHVHHLRRKL---GSD-FIRTVHGIGYTLGEK 219 ++ + SN ++V++ +LR KL G D +I+TV G GY E+ Sbjct: 187 EKIIKSNVIDVYILYLRNKLKPYGYDRYIQTVPGYGYRFCEE 228 >UniRef50_B9JKK7 Two-component response regulator protein n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JKK7_AGRRK Length = 220 Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 90/216 (41%), Positives = 125/216 (57%), Gaps = 6/216 (2%) Query: 4 LLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAP---YDAVILDLTLPGMDGR 60 ++ ED+ I ++ L + V T G +EA Y +D VILDL LP +DG Sbjct: 1 MIAEDEPTIVSDMRRCLEDQHYIVSTVTDG---EEAWYRGDVEHFDLVILDLGLPKLDGL 57 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +LR WR + PV+ILTARD ++V+G+ GADDYL KPF + E+ AR+ ALMRR Sbjct: 58 TVLRRWRAGRRGMPVIILTARDGWRDKVDGMDAGADDYLTKPFRMEELLARVRALMRRAA 117 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 GQ+S L +G + LD +R + G+P+ + E+ LL L+ NAG VLSR I + +Y Sbjct: 118 GQSSPILSNGVLELDTRQRTVSFRGQPVQVTALEYRLLAYLLHNAGTVLSRSQIADSIYD 177 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTL 216 + E+ SNA+EV V LRRK I T G GY + Sbjct: 178 EETELLSNALEVVVARLRRKFDGTVIETRRGQGYLI 213 >UniRef50_C6QDD0 Two component transcriptional regulator, winged helix family n=5 Tax=Proteobacteria RepID=C6QDD0_9RHIZ Length = 262 Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 84/221 (38%), Positives = 132/221 (59%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L+IEDD ++ L + G + D G G YD +I+D LP +DG Sbjct: 37 MRVLVIEDDRETAQFLQKSLKENGHTADLAGDGEAGLALATDGAYDVLIVDRMLPLLDGL 96 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +++ R +G R PVLIL+A + +RV+GLR G DDYL KP+A E+ AR+EAL RRT Sbjct: 97 SVIKSLRAEGNRTPVLILSALGEVDDRVKGLRAGGDDYLTKPYAYSELLARVEALGRRTA 156 Query: 121 G-QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 + + G+++LD T +GE + L+P+E+ LLE LM++AG+V++R ++ E ++ Sbjct: 157 PEEQQTRISVGDLVLDRLSHRVTRSGEHILLQPREYRLLEYLMQHAGQVVTRTMLLEHVW 216 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTL 216 + + +N ++VHV LR K+ +F + TV G GYT+ Sbjct: 217 DYHFDPQTNVIDVHVSRLRAKIDKNFDKPLLHTVRGAGYTI 257 >UniRef50_A1TI70 Two component transcriptional regulator, winged helix family n=6 Tax=Comamonadaceae RepID=A1TI70_ACIAC Length = 237 Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 96/226 (42%), Positives = 130/226 (57%), Gaps = 11/226 (4%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPG---- 56 MRIL++EDD ++ ++ L+ G VD + P+DAV+LDL LP Sbjct: 1 MRILVVEDDAVLRGVMQRSLADAGHRVDVAATLAEADHFWKVQPFDAVLLDLNLPQDAAH 60 Query: 57 ----MDGRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARL 112 G +LR R +G R PVL+LTARD ER+ GL GADDYL KPF L EV ARL Sbjct: 61 ASPVGSGLAVLRAARARGDRTPVLVLTARDRTEERIAGLDAGADDYLGKPFDLAEVEARL 120 Query: 113 EALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRK 172 AL+RRT G + G ++LD R TL G+P L +EF +L LM GRV+S++ Sbjct: 121 RALVRRTQG-TDDRTSAGTLVLDRRVRRFTLHGQPFDLPAREFEVLWELMTPPGRVVSKR 179 Query: 173 LIEEKLYTWDEEVTSNAVEVHVHHLRRKL-GSDF-IRTVHGIGYTL 216 + +KL +D+ + NA+E + LR+KL GS IRT+ G+GY L Sbjct: 180 SLSDKLSDFDDMLGDNALEAFISRLRKKLQGSGAGIRTLRGLGYML 225 >UniRef50_C0QL69 Transcriptional regulatory protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QL69_DESAH Length = 232 Score = 149 bits (377), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 82/226 (36%), Positives = 134/226 (59%), Gaps = 9/226 (3%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M IL+++DD + D ++ L + + ++ G + + ++ YD ++LD+ LP MDG Sbjct: 6 MNILIVDDDSELLDHLRRALERKHYRIETAENGEKALDKIFEITYDLILLDIMLPLMDGL 65 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L+ R+ G PVL+LTAR + +RV+GL GADDYL KPF++ E+ AR+ AL+RR + Sbjct: 66 SVLKHMRQAGLNTPVLMLTARGDVEDRVKGLDYGADDYLAKPFSMAELMARIRALLRR-D 124 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY- 179 G+ L G + L+ R TL P++L KEF++LE L+ N G +SR + E ++ Sbjct: 125 GKRDTILTAGPLSLNTISRTVTLDNGPISLTSKEFSILEFLLHNRGSAVSRFNMAEHVWG 184 Query: 180 -TWDEEVTSNAVEVHVHHLRRKLG------SDFIRTVHGIGYTLGE 218 +D SN V+VH+ +LR+K+ IRT+ GIG+ + + Sbjct: 185 NEFDPFSMSNFVDVHIKNLRKKISPPGDKYPPIIRTIRGIGFIIDD 230 >UniRef50_Q04HD6 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=12 Tax=Lactobacillales RepID=Q04HD6_OENOB Length = 231 Score = 149 bits (376), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 133/221 (60%), Gaps = 6/221 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 ++ILLIEDD ++ D I LS++ V G G+ APYD ++ DL LP M+G Sbjct: 6 VKILLIEDDKILNDDITAMLSEIA-EVKQVFNGADGEYEAVEAPYDLIVSDLMLPEMNGL 64 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 DI++E R+ PVLILTA+D++ ++V+G +GADDYL KPF E+ AR+EAL+RR Sbjct: 65 DIIKEMRDAHIETPVLILTAKDSVDDKVKGFEVGADDYLTKPFHREELLARVEALLRRAG 124 Query: 121 -GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 E+ GN+ + R T+ + + L KE+ +L L +N ++++ I ++++ Sbjct: 125 IDTEEKEINIGNLKIHLSNRTVTVGNQNVQLVGKEYDILVYLAKNKNIIITKDQIFDRVW 184 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTL 216 D + T++ V +++++LRRKL S D I+T+ +G+ L Sbjct: 185 GLDSDTTTSVVNIYLNNLRRKLESVGKNDLIKTLRNVGFIL 225 >UniRef50_Q01473 Protein rcaC n=1 Tax=Fremyella diplosiphon RepID=RCAC_FREDI Length = 651 Score = 149 bits (375), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 85/221 (38%), Positives = 127/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+ILL+EDD ++ + L+ + VD G G + YD +ILD+ LP +DG Sbjct: 1 MKILLVEDDDVLIKVLTKNLTTHHYIVDVVKDGEMGWTYGSTFEYDLIILDIMLPNLDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + + +R +G P+L+LTA+D + +V+GL GADDY+ KPF IE+ AR+ AL+RR + Sbjct: 61 SLCKRFRAQGYTVPILLLTAQDNITAKVQGLDAGADDYVVKPFDPIELIARIRALLRRGS 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 L G+++L+P T G PL L E+ LLELL+RN V S + + +KL++ Sbjct: 121 NNPFPLLTWGDLLLNPSTCEVTYNGCPLNLTTMEYDLLELLLRNCQHVFSSEELLDKLWS 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGS-----DFIRTVHGIGYTL 216 ++ + V HV LR KL + DFI T+HG GY L Sbjct: 181 SEDFPSEATVRSHVRRLRHKLVAAGAPHDFIATMHGRGYYL 221 Score = 59.7 bits (143), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 2/125 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 ++++++DD + T L GF V +Q L + DA++LD+ +P ++G + Sbjct: 527 KVMILDDDQDWLRTLPTLLKPWGFKVTTLADPQQFWTVLQAVTPDALVLDVNMPQINGFE 586 Query: 62 ILREWREKG--QREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 + + R QR PVL L+ + + +G DDYLCKP +E+A R+ ++R Sbjct: 587 LCQLLRSDPHWQRLPVLFLSVLTDPTTQNQAFAVGGDDYLCKPVKGVELANRILRRLQRV 646 Query: 120 NGQAS 124 A+ Sbjct: 647 RAWAN 651 >UniRef50_Q12T20 Two component transcriptional regulator, winged helix family n=11 Tax=Gammaproteobacteria RepID=Q12T20_SHEDO Length = 225 Score = 149 bits (375), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 85/223 (38%), Positives = 125/223 (56%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL+IEDD + G + + D + G++G YD ++LD LP +DG Sbjct: 1 MKILIIEDDATTQSYLVEGFAAQNIATDTASDGQEGLHLARHNSYDLIVLDRMLPKLDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L R G PVLIL+A + + ERV+GLR G DDY+ KPFA E+ R+E L +R Sbjct: 61 TLLGALRSSGNSTPVLILSALNHVDERVKGLRAGGDDYMTKPFAFAELLVRVEKLTQRNQ 120 Query: 121 G-QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 G A EL G + ++ R+ TLA L L+PKEF LL+ LM + +V+SR L+ E ++ Sbjct: 121 GIAAPAELVVGQLRMELLTRVVTLAEHELMLQPKEFQLLKYLMEHPNKVISRTLLFEAVW 180 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTLGE 218 + + +N ++VH+ LRRK + I TV G GY L + Sbjct: 181 DYHFDPRTNVIDVHIAKLRRKFEEIGFPEMIETVRGAGYRLSK 223 >UniRef50_Q2S8G9 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=3 Tax=Proteobacteria RepID=Q2S8G9_HAHCH Length = 228 Score = 149 bits (375), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 86/218 (39%), Positives = 126/218 (57%), Gaps = 4/218 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+ED+ L+ ++ L K G++VD G PYD ++DL LP G Sbjct: 1 MRILLVEDEALLRGQLRDELVKHGYAVDTAEDGEVAAYLGKENPYDLAVVDLGLPKRTGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++++EWR G+ P+LILTAR ++V GL GADDYL KPF + E+ ARL AL+RR++ Sbjct: 61 EVIQEWRGMGKEFPILILTARGHWQDKVSGLEAGADDYLVKPFHVAELMARLGALLRRSS 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G +S ++ G + LD ++ + G L L E+ LE L+ AG+ +S+ + E LY Sbjct: 121 GFSSPVIQAGPMTLDTRAKLVQIDGSALELTAYEYNTLEYLVHRAGQAVSKTELTEHLYA 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGY 214 D + SN +EV + LR+KL D I T+ G GY Sbjct: 181 QDFDRDSNVIEVFIGRLRKKLDPDGVNKPITTLRGQGY 218 >UniRef50_C1F588 TcrA n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F588_ACIC5 Length = 224 Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 88/221 (39%), Positives = 123/221 (55%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M +LLIEDD I ++ GL + G V G G + S +DA +LD+ LPGM G Sbjct: 1 MNVLLIEDDRRIAQLVERGLREDGHRVSVTHDGADGARRMLSGEFDAALLDILLPGMSGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++L R + + P+L+LTA DA+ + +E LGADDYL KPF L + AR+ A+ RR Sbjct: 61 EVLERVRAQHCKTPILMLTAVDAVPKVLEAFDLGADDYLVKPFLLEILLARVGAIARRVQ 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 QA L G + LD +R+ G + L K+ LLE+LMR +G V SR+ + E + Sbjct: 121 PQAPQMLHAGGLTLDRQRRVVARDGRQIALTRKQVDLLEVLMRRSGLVTSREELIEAGWG 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGS-----DFIRTVHGIGYTL 216 V N ++V++H LR KLG IRT+HG GYT Sbjct: 181 SASAVKENTLDVYIHSLRTKLGDRSENRPLIRTIHGTGYTF 221 >UniRef50_UPI00016C506D two component transcriptional regulator, winged helix family protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C506D Length = 230 Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 87/219 (39%), Positives = 127/219 (57%), Gaps = 5/219 (2%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 +LL+ED + ++ G+ + GF+VD T G + S YD V+LD+ LP +DG + Sbjct: 1 MLLVEDHQPLAKALRQGMEEEGFAVDVATDGEEADVKCRSTAYDVVVLDVMLPKVDGLSL 60 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKP-FALIEVAARLEALMRRTNG 121 L+ WR G VL+LTA+ A++V GL GADDYL K L E+ AR+ AL+RR + Sbjct: 61 LKRWRASGVNTHVLMLTAKSETADKVTGLDTGADDYLSKANLDLEELFARIRALIRRGHQ 120 Query: 122 QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTW 181 Q LR ++ +D R AG + L P+E+ALLE L + G+V++R +I E LY Sbjct: 121 QKDPVLRCYDLEIDTAARTVRRAGRSIHLTPREYALLEFLAFHRGKVVTRSMIWEHLYDE 180 Query: 182 DEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTL 216 +E TSN V+V++ +LR K+ +F I T G GY L Sbjct: 181 YDENTSNVVDVYIRYLRNKVDKEFDPQLILTRWGEGYML 219 >UniRef50_B0C620 Two component transcriptional regulator, winged helix family n=19 Tax=Bacteria RepID=B0C620_ACAM1 Length = 226 Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 87/222 (39%), Positives = 131/222 (59%), Gaps = 4/222 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RIL+ ED+ I D +K GL GF+ G Q S +D +ILDL LP DG Sbjct: 3 RILIAEDNPHIVDFLKAGLKAHGFTALVAEDGGQAANLACSDQFDLLILDLGLPRKDGLT 62 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALM--RRT 119 +LRE R +G+ P+++LTARD + + V+ L GA+DY+ KPF E+ AR++ + RR Sbjct: 63 VLREIRGQGELLPIIVLTARDGVDDTVQALERGANDYMTKPFRFEELLARIKVQLRDRRI 122 Query: 120 NGQASNE--LRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEK 177 Q +E L+ GN+ LD R A + + L KEF L E+L+R+ +V+S++ + + Sbjct: 123 GAQPPSETHLQVGNLSLDLLTRQAWVGNRVVELSAKEFILAEVLLRHPMQVMSKEQLLNR 182 Query: 178 LYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK 219 ++ +D + SN +EV++ HLRRK GS +I TV G+GY L Sbjct: 183 VWGYDYDPGSNIIEVYIRHLRRKFGSQYIETVRGMGYRLNSS 224 >UniRef50_A3QGG3 Two component transcriptional regulator, winged helix family n=8 Tax=Proteobacteria RepID=A3QGG3_SHELP Length = 226 Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 82/220 (37%), Positives = 128/220 (58%), Gaps = 4/220 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LL+EDD+ + + ++ L +++D + G +G PYDA I+D+ LP +DG Sbjct: 1 MRLLLVEDDLALQENLRQHLLDANYTLDIASDGEEGLFQGREYPYDAAIIDVGLPKLDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++ RE+G P+LILTARD ++VEGL GADDYL KPF E+ ARL+AL+RR Sbjct: 61 ALIARLREEGIDYPILILTARDNWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRAA 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G++S +++G L+ + ++L E+ L E M + G V S+ ++ E +Y Sbjct: 121 GKSSPVIQNGPYSLNTSSHEIKFGDQDVSLSGSEYKLFEYFMLHIGEVKSKSILIEHIYD 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYTL 216 D ++ SN +EV + LR+KL + I T+ G GY L Sbjct: 181 QDFDLDSNVIEVFIRRLRKKLDPNGQYGLIETLRGQGYRL 220 >UniRef50_C9Z8Q7 Putative two-component response regulator n=1 Tax=Streptomyces scabiei 87.22 RepID=C9Z8Q7_STRSW Length = 251 Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 88/222 (39%), Positives = 127/222 (57%), Gaps = 8/222 (3%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 R+L+++D+ I + L +G+ V GRQ +A+ D ++LD+ LP + G + Sbjct: 28 RLLVVDDEEGIRSMLTMALEFLGYQVTAAATGRQALQAVTRHDPDLILLDVNLPDLGGFE 87 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + R R++G PVL LT + +RV GL +G DD++ KPF L EVAAR+ AL+RR+ G Sbjct: 88 VCRTLRDRGNAVPVLFLTGLGGVDDRVRGLDMGGDDFVTKPFELKEVAARVRALLRRSGG 147 Query: 122 ----QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEK 177 N LR G + LD A P+ L EFALL LM N GRVLSR I+E+ Sbjct: 148 GRPAPDRNRLRAGAIQLDADAHQVWAADRPVDLTTTEFALLRYLMENPGRVLSRGQIQER 207 Query: 178 LYTWDEEVTSNAVEVHVHHLRRKL---GSDFIRTVHGIGYTL 216 ++ +E S V+ ++++LRRKL G IRTV G+GY L Sbjct: 208 VWNHRDE-GSGVVDTYIYYLRRKLGEPGQSLIRTVRGVGYQL 248 >UniRef50_Q3B3K7 Two component transcriptional regulator, winged helix family n=9 Tax=Bacteroidetes/Chlorobi group RepID=Q3B3K7_PELLD Length = 232 Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 90/220 (40%), Positives = 127/220 (57%), Gaps = 5/220 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L+IED+ I +K GL + F+VD G G E S YD ++D LP + G Sbjct: 1 MRLLIIEDEPGIARFLKEGLEEEHFAVDTAFDGESGLELGMSNDYDLCLIDWMLPKLSGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++ R+ R+ G PV+ LTARD L + V GL GADDY+ KPFA E+ AR+ A +R+ N Sbjct: 61 EVCRQLRKAGSAVPVIFLTARDTLDDVVFGLGAGADDYVKKPFAFEELLARIRARLRQ-N 119 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + L G + LDP A LTL PKEFALLE L+RN RV +R I E ++ Sbjct: 120 TPTTGPLTAGALWLDPETHRAGCNRHDLTLTPKEFALLEYLLRNLDRVCTRSRIIEHVWD 179 Query: 181 WDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 216 + ++ ++V+V+ LRRKL + I+TV G+GY + Sbjct: 180 IHFDADTSVIDVYVNFLRRKLEAAGCTGLIKTVRGVGYVI 219 >UniRef50_UPI00017468BB two component transcriptional regulator, winged helix family protein n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017468BB Length = 227 Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 82/216 (37%), Positives = 128/216 (59%), Gaps = 1/216 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L++EDD + + L + ++VD G +G + YD ++LD+ LPG+ G Sbjct: 12 MRVLVVEDDPDLRRSLVATLREENYAVDAAGDGAEGFQRALENEYDVIVLDVMLPGLSGW 71 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + L++ R + PVL+LTARDA+ +RV+GL GADDYL KPF + E+ AR+ AL+RR Sbjct: 72 EFLQKLR-PTKTSPVLMLTARDAVQDRVKGLNQGADDYLTKPFDIEELLARIRALIRRAA 130 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 GQ L ++ +D R GE + + +E+ L+E L + G V+SR + E L+ Sbjct: 131 GQPQPVLTIRDLSIDTAARKVLWKGEEVPVTAREYTLIEYLALHQGEVVSRTTLYEHLFD 190 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTL 216 D+ SN ++VHV +LR+KL + I T G GY++ Sbjct: 191 EDDSTLSNLLDVHVSNLRKKLAPELITTRRGHGYSI 226 >UniRef50_A8SVV6 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SVV6_9FIRM Length = 228 Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 85/229 (37%), Positives = 134/229 (58%), Gaps = 16/229 (6%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RIL++EDD++I G+K L K G+ V+ ++ L +D ++LD LP G D Sbjct: 3 RILVVEDDVIICGGVKLFLEKRGYEVETAYSCKEADGCLEHG-FDLILLDRNLPDGRGLD 61 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT-- 119 RE R K + P++ LTARD A+ +EG R G DDY+ KPF++ + R+EA++RR+ Sbjct: 62 YCRELR-KSTKVPIIFLTARDTEADMIEGFRAGCDDYIAKPFSVELLYQRIEAVLRRSEN 120 Query: 120 --NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEK 177 +G +G++ +D + ++ EP+ L E+ +LELL++N GRVL+R +I +K Sbjct: 121 APDGVKRERFHYGDMSVDFERMQVYISDEPIKLSVTEYRILELLIKNKGRVLTRDMIIQK 180 Query: 178 LYTWDEE---VTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218 + WD+ V N + VH+ LR+K+ D ++ TV GIGYT GE Sbjct: 181 I--WDDNENYVDENTLNVHIRRLRQKIEKDAGNPEYVITVFGIGYTFGE 227 >UniRef50_C1XYD1 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XYD1_9DEIN Length = 226 Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 91/221 (41%), Positives = 124/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLP--GMD 58 MR+LL+EDD + I GL G VD G+ YD +ILD+ LP Sbjct: 1 MRVLLVEDDPRLAALIAEGLRDDGLMVDHAPDAAIGQGMAELEAYDLLILDVMLPEGPQA 60 Query: 59 GRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR 118 G D+ R R + + P+L LTAR + ++ GL G DDYL KPF E+ AR+ AL+RR Sbjct: 61 GFDLARTLRNQRDKIPILFLTARGDMDSKLTGLDTGGDDYLTKPFDFRELRARIRALVRR 120 Query: 119 TNGQASN--ELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEE 176 G+A+N L G V LD G+P+ L P+E+AL+E L N GR SR + E Sbjct: 121 AKGEAANLIPLPKGYV-LDLSAHQVLKGGQPVPLTPREYALVECLGLNPGRAYSRNSLIE 179 Query: 177 KLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLG 217 +++ + EV + V+V+V LRRKLG DF+ TV G+GY LG Sbjct: 180 RVWPGESEVDTKVVDVYVSSLRRKLGEDFVETVRGLGYRLG 220 >UniRef50_C8SKU4 Two component transcriptional regulator, winged helix family n=4 Tax=Rhizobiales RepID=C8SKU4_9RHIZ Length = 371 Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 82/219 (37%), Positives = 128/219 (58%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILLIED G ++ + G +V+W + + PY V+LD+ LP +G Sbjct: 1 MRILLIEDSEDFGSAVREHMIADGHAVEWAKDLSEARYHASGIPYGLVLLDINLPDGNGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 D LRE R+ PV+I+TAR + +R+EGL GA DYL KPF E++AR+ A+ R++ Sbjct: 61 DYLREMRKGRDSTPVIIVTARHTVEDRIEGLNAGAADYLVKPFDPRELSARIHAVA-RSH 119 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G G + ++ +R L G+P+ L +E+A+L+ ++ G V+ ++ IEE+L + Sbjct: 120 GNFPKPYSVGALSINAAERRVALDGQPVNLTAREWAILDCVLSRPGAVVLKRKIEEELLS 179 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK 219 E SN VEV+V LR+K+G D I T+ G+GY+ E+ Sbjct: 180 LGSESESNTVEVYVSRLRKKIGRDRIATLRGLGYSFVEE 218 >UniRef50_B8G7R1 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G7R1_CHLAD Length = 234 Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 93/218 (42%), Positives = 129/218 (59%), Gaps = 7/218 (3%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 IL+++D+ I + K L G+ V T G +G + D ++LDL LPGMDG +I Sbjct: 5 ILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLMLPGMDGMEI 64 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQ 122 REK +L+LTAR +RV GLR+GADDYL KPF+ E+ AR+EA++RR G+ Sbjct: 65 TARLREKSDVF-ILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAILRRRRGK 123 Query: 123 A--SNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 S+ +R +V +DP R A AG+ L L P EF LL L RN RVLSR+ + EK++ Sbjct: 124 PVKSSVMRFTHVEIDPDAREARAAGQLLELTPTEFDLLIALARNHNRVLSREDLIEKVWG 183 Query: 181 WDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGY 214 D T V+V+V +RRK+ G + IRT G+GY Sbjct: 184 ADFYGTDRVVDVYVSQVRRKIEALTGENLIRTARGVGY 221 >UniRef50_B7JEB2 Alkaline phosphatase synthesis transcriptional regulatory proteinphoP n=9 Tax=Bacillus cereus group RepID=B7JEB2_BACC0 Length = 220 Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 84/218 (38%), Positives = 125/218 (57%), Gaps = 2/218 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 +RILL+EDD I + +K LS G+ VD G + Y Y VILD+ LPGM+G Sbjct: 3 IRILLVEDDEHICNAVKVFLSGAGYKVDACFNGDEAHTKFYDNTYQLVILDILLPGMNGH 62 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++LRE+R K PVL++TA ++ ADDY+ KPF + + R+EAL+RR+ Sbjct: 63 ELLREFR-KLNNTPVLMMTALSDDENQIRAFDAEADDYVTKPFKIQLLLKRVEALLRRS- 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G + EL +G + + P E L L KEF +L LL++N GR LS ++I +++ Sbjct: 121 GAVAKELHYGKLTILPEDFKVFYDDEELLLTLKEFEILMLLVQNNGRTLSHEVILSRVWG 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE 218 +D + + V H+ +LR KL + I+TV G+GY L E Sbjct: 181 YDFDGDGSTVHTHIKNLRAKLPDNIIKTVRGVGYRLEE 218 >UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6L0_9BACL Length = 241 Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 85/228 (37%), Positives = 134/228 (58%), Gaps = 13/228 (5%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 R+L+IED+ + + L+ G+ V G+ G E +D ++LDL LPGM+G + Sbjct: 4 RLLVIEDEPTLSRLLSYNLTNEGYEVIVEDHGQIGYETALRQDFDLILLDLMLPGMNGFE 63 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 I+ + R +G + PV+ILTA++A E V+GL+ GADDY+ KPF + E+ AR+ A++RR+ G Sbjct: 64 IMSKLRSEGVKTPVIILTAKNAEEEVVQGLKSGADDYITKPFGVAELLARVAAVLRRSTG 123 Query: 122 ---------QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRK 172 Q ++++ G + + P K TL GEP+TL+PKEF +L L R G V++R Sbjct: 124 KEEREKPAEQDNSQIVLGALTIYPEKYEVTLNGEPITLRPKEFEVLLYLARKPGVVMTRD 183 Query: 173 LIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYTL 216 + ++ +D V+VHV LR+KL D I ++ G+GY L Sbjct: 184 DLMNAVWGFDYIGGQRTVDVHVSSLRKKLELDPQSVHIDSIRGVGYKL 231 >UniRef50_Q3ID21 DNA-binding response regulator of two-component system n=1 Tax=Pseudoalteromonas haloplanktis TAC125 RepID=Q3ID21_PSEHT Length = 223 Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 83/217 (38%), Positives = 128/217 (58%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M +LL+EDD +I D I T L+ G +V+ + + S+ +D ILDL LP +G Sbjct: 1 MFVLLVEDDDVIADAICTYLTHQGLAVEHVSTLSAATTYMQSSNFDLCILDLNLPDGNGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + L R+ PVLILTA + + ++V GL+ GADDYL KPF L E+ ARL +L RR + Sbjct: 61 NWLSWLRDSRFSLPVLILTASNTIDDKVIGLKKGADDYLVKPFDLRELLARLLSLKRRAS 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + SN + HG + D + A L G + L E LL+ + + ++L++ ++ LY Sbjct: 121 DRLSNTITHGALQYDLEQHKALLNGTLVCLSRNEDLLLQTFLNSPQQILTQSQLKNVLYG 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLG 217 ++V SNA+ VH+ +LR+KLG+ I T+ G+G+ LG Sbjct: 181 VCDDVASNALNVHIFNLRKKLGAPAIETIRGLGFRLG 217 >UniRef50_C0C014 Putative uncharacterized protein n=2 Tax=Clostridium RepID=C0C014_9CLOT Length = 237 Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 81/219 (36%), Positives = 125/219 (57%), Gaps = 3/219 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 +R+L+IED+ + D +K LS G+ D G G YD ++LDL LP DG Sbjct: 16 VRLLIIEDNTELADLMKGKLSGFGYVCDVAYDGESGDLKASDNDYDVILLDLNLPDRDGF 75 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++L WR +G PV I+TAR L +RV+GL+LG+DDY+ KPF E+ AR++A++RR Sbjct: 76 ELLENWRSQGISAPVFIVTARGELEQRVKGLQLGSDDYITKPFEFTELDARIQAVIRRFR 135 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G+A+ + + LDP R TL G + L KEF +LE L R++S + + E +Y Sbjct: 136 GRANPVILIEELSLDPATRRVTLDGREVPLSAKEFDILEYLASCYPRIVSNEELAEHVYD 195 Query: 181 WDEEVTSNAVEVHVHHLRRKL---GSDFIRTVHGIGYTL 216 + + S + VH+ ++++KL + +R G GY L Sbjct: 196 ENFDPFSGVIRVHMANIKKKLKMGDTSILRNEKGKGYYL 234 >UniRef50_A1SID6 Two component transcriptional regulator, winged helix family n=1 Tax=Nocardioides sp. JS614 RepID=A1SID6_NOCSJ Length = 228 Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 86/219 (39%), Positives = 135/219 (61%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYS-APYDAVILDLTLPGMDG 59 MRIL+ EDD+ + D ++ L++ G+ V+ GR E L S + D +LD LPG+DG Sbjct: 1 MRILVAEDDVRLADVLEESLAEAGWQVEVAHDGRSAYERLLSDSSLDVALLDWMLPGLDG 60 Query: 60 RDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 + R R+ G P+L+LTAR + +RV GL GADDYL KPF L E+ ARL AL RR Sbjct: 61 VTVARRLRDLGVALPILMLTARGDVRDRVSGLDAGADDYLPKPFDLDELLARLRALYRRG 120 Query: 120 NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 + ++ G++++DP R T G + L +EF +L LL+ +AGRV+SR +I ++++ Sbjct: 121 SLVGEAPVQLGDLVVDPVARRVTRGGVEIVLSAREFDILHLLVSHAGRVVSRLMILDEVW 180 Query: 180 TWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGY 214 + ++ SN ++VH+ +R K+ G++ I T+ G+GY Sbjct: 181 DGETDLRSNVIDVHLAAIRAKIDKPFGTETITTLRGVGY 219 >UniRef50_A0YP32 Two-component response regulator n=1 Tax=Lyngbya sp. PCC 8106 RepID=A0YP32_9CYAN Length = 824 Score = 147 bits (370), Expect = 3e-34, Method: Composition-based stats. Identities = 81/220 (36%), Positives = 126/220 (57%), Gaps = 4/220 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR L+IE+D IK L + G+ VD G QG + + YD ++++ LP ++G Sbjct: 1 MRFLVIENDAAQAHQIKKALIEQGYIVDVVIDGEQGWAYVEAFTYDLLLVNAHLPKLNGV 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 D+ + RE+G P+L+LT +++ + V L G DD+L KPF+ E+ AR+ AL+R Sbjct: 61 DLCQRIREQGYSVPILLLTVQNSSIDHVACLEAGIDDHLIKPFSPRELFARIRALLRSPR 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + L+ ++ LDP R T PL+L PKE++LLEL +RN RVL++ I E L++ Sbjct: 121 QANAPLLKWNSLHLDPISREVTYQQHPLSLSPKEYSLLELFLRNPKRVLTQTAILEHLWS 180 Query: 181 WDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 216 ++ + + V H+ LRRKL I TV+G+GY L Sbjct: 181 FESQPNEHTVRAHIKRLRRKLKTVNADKIIETVYGVGYRL 220 Score = 57.4 bits (137), Expect = 4e-07, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 6/122 (4%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 R+L+I+DD+ + + ++ +D TQ + + L P D V+LDL P D +D Sbjct: 404 RVLVIDDDLELTEQLQRAAINWNIQLDVITQLEKARLILQETPPDLVLLDLVFP--DHQD 461 Query: 62 ----ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMR 117 +L E + K PVL+ T RD +++R RLG + +L K + +V ++ +++ Sbjct: 462 GGFVLLEELQHKFSELPVLVWTVRDDMSDRATVARLGGNAFLSKSASCDQVLTTIKDILQ 521 Query: 118 RT 119 T Sbjct: 522 ST 523 Score = 45.1 bits (105), Expect = 0.002, Method: Composition-based stats. Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 2/113 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +IL ++DD + + + L G V R E L + +ILDL +P +G + Sbjct: 529 QILAVDDDPVTLNRLLELLPSYGLEVTPLDDPRLFWETLEKTAPELLILDLEMPFFNGVE 588 Query: 62 ILREWREKGQRE--PVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARL 112 + + R P+L L+AR + + GADDY+ KPFA E+ R+ Sbjct: 589 LCQTVRTDRSWNALPILFLSARKEPQTIQDIYQAGADDYISKPFAEAELITRI 641 >UniRef50_C1F2N1 DNA-binding response regulator n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F2N1_ACIC5 Length = 230 Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 89/221 (40%), Positives = 128/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSK-MGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDG 59 MRIL++ED+ + I + + G++VD G G++ YD V+LDL LPG+DG Sbjct: 1 MRILVVEDEERLAGNIAAAMREGPGWAVDLAHSGLAGRDLCLQTEYDLVLLDLMLPGLDG 60 Query: 60 RDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 +LR+ R KG PVL+LTA A +E L GADDYL KPF L E+ AR +AL+RR Sbjct: 61 LGVLRDMRGKGIATPVLVLTAVAEKASVIELLNAGADDYLAKPFDLGELLARAKALIRRG 120 Query: 120 NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 G + + G ++LD ++ T G P+ L P E+ +LE L V+S++ + E LY Sbjct: 121 KGVSHPVINIGALVLDTVEKSVTCHGIPIELSPTEYRVLEFLGHRPRSVVSKQTLLEHLY 180 Query: 180 TWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 216 ++ E SN +E H+ +LRRKL G +I T+ G GY L Sbjct: 181 DYNWEHHSNVIEAHISNLRRKLNQQEGDAWIETLRGRGYRL 221 >UniRef50_B1Y345 Two component transcriptional regulator, winged helix family n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y345_LEPCP Length = 213 Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 87/217 (40%), Positives = 131/217 (60%), Gaps = 7/217 (3%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LL+EDD+ +G + L G SV W Q + + +D ++DL LP DG Sbjct: 1 MRVLLLEDDIDLGQAVDDHLEAAGHSVYWCKLVSQVR----NVTFDLALVDLNLPDGDGV 56 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 D++R WR+ G+ PV++LTARD +++R+ GL+ GADDYL KPF L E+ AR++A++RR++ Sbjct: 57 DLVRYWRQAGRLTPVIMLTARDQVSDRIRGLQAGADDYLVKPFDLDEMLARIDAVLRRSS 116 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 ++ H NV+ D +R G+PL L E+A+L L GR+ +R I+ L Sbjct: 117 PSPRLQV-HDNVV-DLEQRQVLHQGQPLDLTAMEWAVLRCLASRPGRIFNRGEIDVALAA 174 Query: 181 WDEEVT-SNAVEVHVHHLRRKLGSDFIRTVHGIGYTL 216 + + SN +EV V LR+KLG+D I T G+GY L Sbjct: 175 DGQPSSDSNTLEVIVSRLRKKLGADVISTHRGMGYRL 211 >UniRef50_B5JI66 Response regulator receiver domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JI66_9BACT Length = 224 Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 133/223 (59%), Gaps = 10/223 (4%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAP---YDAVILDLTLPGM 57 M++L+ ED + + + GL + G++VD + G EA + A YDA I D+ +PG Sbjct: 1 MKVLVAEDQTKVANFLAKGLGEAGYTVDL---AKDGDEASWLAELHEYDAWIFDIMMPGR 57 Query: 58 DGRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMR 117 DG ++R+ R G+R P ++LTAR+ + +RV+GL GADDYL KPF+L E+ ARL A++R Sbjct: 58 DGVSLIRQLRRNGKRTPTILLTARNRVEDRVQGLDAGADDYLAKPFSLTELLARLRAILR 117 Query: 118 RTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEK 177 R + +N + ++ LD A ++L +EF+LLELLM + R +S+ I EK Sbjct: 118 RQRPEMNNLVSVSDLKLDLVSHTAWRGQREISLTNREFSLLELLMLASPRPVSKSAITEK 177 Query: 178 LYTWDEEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYTL 216 ++ + +N V+V++ +LR K+ + I+T GIGY + Sbjct: 178 VWDQSYDAGTNIVQVYIKYLREKIDQEGEPPLIQTARGIGYAI 220 >UniRef50_Q3MGM2 Sensor protein n=22 Tax=Bacteria RepID=Q3MGM2_ANAVT Length = 1629 Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 127/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL++EDD L + L+ ++V+ + G E + + YD ++LD+ LP +DG Sbjct: 1 MKILIVEDDELNAYALTAVLTNQNYAVEVGSDGITAWELIQTYDYDLILLDVILPRLDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + R+ R G++ P+L+LT D+ E+ GL GADDY+ KPF E+ AR+ AL+RR Sbjct: 61 SLCRQIRSSGRQMPILLLTGCDSSHEKAIGLDAGADDYVVKPFDEEELVARVRALLRRGG 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 A L GN+ LDP L+L PKE+ALLEL +R++ RV S +I E +++ Sbjct: 121 TTAQPILEWGNLQLDPSSCEVRYNQNLLSLTPKEYALLELFLRHSRRVFSCSMILEHIWS 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGS-----DFIRTVHGIGYTL 216 +++ AV H+ LR KL + D + TV+GIGY L Sbjct: 181 YEDTPGEEAVRTHIKGLRMKLRNAGAPGDLVETVYGIGYRL 221 Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 2/113 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 ++L ++DD I ++T L G V RQ E L D +ILD+ +P +G + Sbjct: 382 KVLAVDDDPQILAILQTLLHPWGLQVITLDDPRQFWETLRDVNPDLLILDVEMPYTNGIE 441 Query: 62 ILREWREKGQRE--PVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARL 112 + + R Q P+L LT + +GADD++ KP E+ R+ Sbjct: 442 LCQVVRNDPQWSELPILFLTVHKDGEIVNQVFSVGADDFVSKPIVGPELVTRI 494 >UniRef50_Q12PS6 Two component transcriptional regulator, winged helix family n=79 Tax=Proteobacteria RepID=Q12PS6_SHEDO Length = 243 Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 128/225 (56%), Gaps = 12/225 (5%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LL+EDD+ + +K L +S+D + G G PYDA I+D+ LP +DG Sbjct: 1 MRLLLVEDDIALQQNLKQHLQNANYSLDIASDGELGLYQGLEFPYDAAIIDIGLPKLDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +++ RE+ P+L+LTARD+ ++V GL GADDYL KPF E+ AR++AL+RR Sbjct: 61 SLIKTLRERQVSYPILVLTARDSWQDKVSGLDAGADDYLTKPFHPEELLARMKALIRRAA 120 Query: 121 GQASNELRHG----NVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEE 176 G+AS+ + +G N+ KR L + L E+ L E LM + G V S+ ++ E Sbjct: 121 GKASSLVSNGPFSVNLTSLEVKRHEVL----VNLSSSEYKLFEFLMLHPGEVQSKSVLTE 176 Query: 177 KLYTWDEEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYTLG 217 +Y D ++ SN +EV + LR+KL D I T+ G GY L Sbjct: 177 HIYDQDFDLDSNVIEVFIRRLRKKLDPDNQYQLIETLRGQGYRLN 221 >UniRef50_B6FX18 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FX18_9CLOT Length = 224 Score = 146 bits (369), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 87/224 (38%), Positives = 138/224 (61%), Gaps = 8/224 (3%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL +ED+ + D I LSK F V+ G + + YD V+LDL LPGM+G Sbjct: 1 MKILAVEDNKTLLDSIIEELSK-HFDVEGCEDGEEALYMIEQDIYDLVVLDLMLPGMNGM 59 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +IL+ R KG PVLILTA++AL ++VE + GA+DYL KPF + E+ AR+ A++ RTN Sbjct: 60 EILKNARNKGIDTPVLILTAKEALDDKVEAFQTGANDYLTKPFYMEELVARVYAIL-RTN 118 Query: 121 GQASNE--LRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 G+ + + L+ ++ +D ++ + E +TL+ K++ LLE + N G +L ++ I +++ Sbjct: 119 GKLTEKTGLQFKDMYIDTSEKRVFIGDEEITLQNKQYNLLEYFVMNRGAILLKEQIYDRI 178 Query: 179 YTWDEEVTSNAVEVHVHHLRRKL---GSD-FIRTVHGIGYTLGE 218 + D + T VEV+V +LR+KL G D +I+T +GY L E Sbjct: 179 WGIDSDATIEIVEVYVSNLRKKLSKFGYDKYIKTKRKVGYILDE 222 >UniRef50_Q6MHZ0 Two component response regulator n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MHZ0_BDEBA Length = 224 Score = 146 bits (369), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 129/221 (58%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR L++EDD I +K GL ++ VD + GR+ E + YD ++LDL LP MDG Sbjct: 1 MRCLVVEDDNEIATIVKQGLGELEGDVDVESNGRRAFEKAQTNHYDIIVLDLMLPEMDGY 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + REK P+LIL+A L +R++GL +G DDYL KPFA+ E+ R++ L++R+ Sbjct: 61 TFAKSLREKEINTPILILSALRELDDRLKGLSMGGDDYLTKPFAMAELQIRVKNLLKRSQ 120 Query: 121 GQAS-NELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 + +L ++ L+ R AG L L+ +EF LL+L M N +++ ++ I ++++ Sbjct: 121 KASEVTQLVFQDLKLNRLNRDVVRAGRKLDLQEREFVLLDLFMSNPNKIIGKQTILKEVW 180 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTL 216 +D + +N V+V V LR KL DF I TV G+GY L Sbjct: 181 NYDFDPQTNVVDVLVCRLRNKLEKDFPTRLIYTVRGVGYVL 221 >UniRef50_A4AF30 Two component transcriptional regulator, winged helix family protein n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AF30_9ACTN Length = 241 Score = 146 bits (369), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 90/228 (39%), Positives = 127/228 (55%), Gaps = 12/228 (5%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEAL-YSAPYDAVILDLTLPGMD- 58 M++L+IEDD+ + D I+ L + G++ G EA YD V+LDL LPG+D Sbjct: 1 MKVLIIEDDVRLADVIRRSLGEAGYATHVAHDAPSGIEAFEVDVTYDLVVLDLMLPGLDV 60 Query: 59 ------GRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARL 112 G + R RE P+L+LTA D + +VEGL GADDYL KPF L+E+ AR+ Sbjct: 61 AGDEPAGMTVCRRIRELDTNVPILMLTALDGMRTKVEGLDAGADDYLVKPFHLVELLARV 120 Query: 113 EALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRK 172 AL+RR+ + L V LD R A G + L KEFA+LE LMRNAGR++S Sbjct: 121 RALLRRSPQAQAPVLTVRGVALDASTRTAERDGRRIQLTAKEFAVLEYLMRNAGRIVSST 180 Query: 173 LIEEKLYTWDEEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTL 216 + + + + E SN V+ ++ +LR+KL + D I T G GY + Sbjct: 181 ELIDHAWDSNYEGFSNVVQTYIRYLRQKLTAGGEPDVIETRRGSGYVI 228 >UniRef50_A4CE30 Probable two-component response regulator transcription regulator protein n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4CE30_9GAMM Length = 227 Score = 146 bits (369), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 84/224 (37%), Positives = 128/224 (57%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD + ++ GL G+ + G++G E + ++LD+ LP ++G Sbjct: 1 MRILLVEDDDRVASFLERGLRAEGYFIVRACDGKEGLELAQEGDFQLILLDIMLPSLNGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++ + R K P+++LTA D + ++GLRLGADDY+ KPFA E+ AR+EA+ RRT Sbjct: 61 EVCQALRIKKNLVPIIMLTAMDESQDIIKGLRLGADDYVTKPFAYDELLARIEAVTRRTP 120 Query: 121 GQASNE--LRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 + N L G + D I +L E ++L KE A+LELLM N G+ LSR+ I + Sbjct: 121 NEIKNTNILEFGPLCFDRSSYIVSLDNEEISLTVKEMAILELLMTNTGKYLSRERILSNV 180 Query: 179 YTWDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLG 217 + + + +N V+V++ LR+KL G I T GIGY L Sbjct: 181 WGMEMDPMTNVVDVYIGKLRKKLTIESKGESMIETKRGIGYRLN 224 >UniRef50_A9AWM9 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWM9_HERA2 Length = 232 Score = 146 bits (369), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 88/229 (38%), Positives = 135/229 (58%), Gaps = 12/229 (5%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RIL+++D+ + D +++ + GF+V G L + YD +ILD+ LPG+DG Sbjct: 3 RILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDGFG 62 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 +LR+ R +G +PV++LTAR +RV GL LGADDY+ KPF+ E+ AR+ AL+RRT Sbjct: 63 VLRQMRAEGFEQPVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRRTAE 122 Query: 122 QASNELRHGN-------VMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLI 174 + + G+ + LD +R AT LTL+PKEF LL L + G+V +R+++ Sbjct: 123 ASRLRQQIGDAAPTSSGLQLDNARRRATFRDVQLTLRPKEFDLLAYLASHPGQVFTREVL 182 Query: 175 EEKLYTWDEEVTSNAVEVHVHHLRRKLG-----SDFIRTVHGIGYTLGE 218 +++ +DE V + V+VH+ LR KL S+ I+T GIGY E Sbjct: 183 LGQVWGYDEYVDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGYRFIE 231 >UniRef50_Q5SJK6 Response regulator n=6 Tax=Deinococci RepID=Q5SJK6_THET8 Length = 240 Score = 146 bits (368), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 90/221 (40%), Positives = 136/221 (61%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMD-- 58 +++LL+ED+ +G + L+ G+ V W + +EA D ++LD+ LP + Sbjct: 22 VQVLLLEDEPRLGQAVARALAAQGYGVRWARSLGEAREAFLELEPDLMVLDVRLPEDEDG 81 Query: 59 GRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR 118 G +E RE G + P+L LTARDAL +RV+GL LG DDYL KPF L E+ AR+ AL+RR Sbjct: 82 GFRFAKEAREAGYKGPILFLTARDALEDRVQGLDLGGDDYLVKPFHLEELLARVRALLRR 141 Query: 119 TNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 + ++ +R G + +D R LAG + L KEFALLE L+ + GRV + + + E++ Sbjct: 142 ASEVKASRVRLGPLEVDLAGRGVYLAGRRVDLSLKEFALLETLLLHPGRVFAPEELAERV 201 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK 219 + E+V AV+V+VH+LR+KL + +RTV G GY LG + Sbjct: 202 FGDPEKV--GAVKVYVHYLRQKLFPEVVRTVPG-GYRLGHE 239 >UniRef50_UPI0001698E96 transcriptional regulatory protein n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001698E96 Length = 145 Score = 146 bits (368), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 72/141 (51%), Positives = 95/141 (67%) Query: 76 LILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVMLD 135 +I+TARD + +RV L GADDYL KPF E+ ARL A+ RR + + HGN+ LD Sbjct: 1 IIITARDQIQDRVCALDNGADDYLVKPFDTDELCARLRAMQRRFYRGVNTIIEHGNIQLD 60 Query: 136 PGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTWDEEVTSNAVEVHVH 195 + G P+TL P+EF LL++L+ NAGRVLSR+ + E LY WD+ + SNAVEV +H Sbjct: 61 LSSHRLEINGIPVTLSPREFTLLQVLLENAGRVLSRQRLIESLYGWDDSIDSNAVEVFIH 120 Query: 196 HLRRKLGSDFIRTVHGIGYTL 216 HLR+K+G IRTV GIGY + Sbjct: 121 HLRKKVGPGLIRTVRGIGYLI 141 >UniRef50_C7IFX1 Two component transcriptional regulator, winged helix family n=5 Tax=Clostridiales RepID=C7IFX1_9CLOT Length = 217 Score = 146 bits (368), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 77/215 (35%), Positives = 129/215 (60%), Gaps = 6/215 (2%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 IL++ED++ I + +K L +G + G + + YD +ILD+ LPG+DG ++ Sbjct: 4 ILIVEDEVAINELVKRNLQLVGHQCNSVFDGNAAVQEIQCRSYDLIILDIMLPGLDGFEV 63 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQ 122 + E+ + P + L+A++++ +R++G +GADDYL KPF ++E+ AR+EA++RRT Sbjct: 64 I----EQANKTPTIFLSAKNSMPDRIKGFSMGADDYLTKPFEMLELLARVEAVLRRTQRT 119 Query: 123 ASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTWD 182 AS GNV +D G+ + PKE+ LLE+L+ N LSR+ + E ++ +D Sbjct: 120 ASC-FEAGNVKIDFSSHQVFHNGQSVECTPKEYELLEVLVNNRNIALSRERLLELVWGYD 178 Query: 183 EEVTSNAVEVHVHHLRRKLG-SDFIRTVHGIGYTL 216 E + V+VH+ LR+KL D I+TV+ +GY L Sbjct: 179 FEGDTRTVDVHIQKLRKKLEWEDRIKTVYKLGYRL 213 >UniRef50_A6Q965 Two-component response regulator n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6Q965_SULNB Length = 220 Score = 146 bits (368), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 83/220 (37%), Positives = 125/220 (56%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M +L++ED+ + D +K L + + D R E YD ++LD LP DG Sbjct: 1 MYLLIVEDEKAVADQLKELLEQEKYRCDVAYNYRDALEYCDERRYDLILLDWNLPDGDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L RE+ PVL+L+A + +RV L G DDYLCKP++ IE+ AR+ AL+RR + Sbjct: 61 TLLNVLREEEDATPVLMLSANSKVDDRVAVLDAGGDDYLCKPYSNIELLARIRALLRRES 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 Q + L+ G++ LD R + EP+TL P EF LLELL+ N VL+R + + L Sbjct: 121 PQKTTLLKSGDLTLDTSSRKVCVNKEPITLSPAEFDLLELLLHNKNIVLTRYQLNDYLCQ 180 Query: 181 -WDEEVTSNAVEVHVHHLRRKLGSD-FIRTVHGIGYTLGE 218 ++ SN V+VH+ +LR+K+G D I TV G+ Y + + Sbjct: 181 DYNSLKQSNLVDVHIKNLRKKIGIDNCIVTVRGVRYKIQD 220 >UniRef50_A9BVB6 Two component transcriptional regulator, winged helix family n=5 Tax=Proteobacteria RepID=A9BVB6_DELAS Length = 226 Score = 145 bits (367), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 79/204 (38%), Positives = 118/204 (57%) Query: 13 GDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGQR 72 G+G++ L F V W + + + L D ++LDL LP DG +L R + + Sbjct: 13 GNGVRLALQDQRFDVTWVRRIAEARPLLDQGACDLLVLDLGLPDGDGLSLLARVRRERKD 72 Query: 73 EPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNV 132 P+LILTARD L +R+ GL GADDY+ KPFAL E+ +R+ AL RR+ G + Sbjct: 73 LPILILTARDGLDDRLRGLDGGADDYVVKPFALAELLSRIRALRRRSLGTEEQVFDVRGL 132 Query: 133 MLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTWDEEVTSNAVEV 192 +L+ R ++ G + L P EFALL L+R +V SR ++EE++ SN++EV Sbjct: 133 VLNERSRRVSVFGREIDLSPSEFALLAALIRRPDQVFSRHMLEEEVLPGSGRYASNSLEV 192 Query: 193 HVHHLRRKLGSDFIRTVHGIGYTL 216 H+ LRR++G ++RTV G+GY L Sbjct: 193 HISSLRRQIGEGYVRTVRGVGYVL 216 >UniRef50_C5EI97 Response regulator receiver protein n=8 Tax=Bacteria RepID=C5EI97_9FIRM Length = 234 Score = 145 bits (367), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 93/227 (40%), Positives = 129/227 (56%), Gaps = 17/227 (7%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSA---PYDAVILDLTLPGM 57 MRILL+EDD + IK L + G+ D QG +EA Y A PYD +ILD LP M Sbjct: 7 MRILLVEDDRELSGTIKLQLEQAGYETDCCGQG---QEAFYYASEYPYDVIILDRMLPQM 63 Query: 58 DGRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMR 117 DG +L+ R PV+I TA D + +R++GL GADDYL KP+A E+ AR+ A+ R Sbjct: 64 DGLSVLQGLRRMDITTPVIITTALDGVNDRIDGLDAGADDYLVKPYAAGELLARIRAVTR 123 Query: 118 RT----NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKL 173 R G+A N+ +D +R ++L +E AL+E LMRNAG+VL R L Sbjct: 124 RPGRLEQGRAKT---FSNITMDTDRRELAGPSGTVSLSRREAALMEYLMRNAGQVLPRGL 180 Query: 174 IEEKLYTWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 216 I ++ D EV ++ +++ LRR+L + I+TVHGIGY L Sbjct: 181 ILSYIWGPDSEVEDGNLDNYIYFLRRRLKAVGTAAQIKTVHGIGYRL 227 >UniRef50_Q6ADD5 Two-component system, regulatory protein n=1 Tax=Leifsonia xyli subsp. xyli RepID=Q6ADD5_LEIXX Length = 220 Score = 145 bits (367), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 90/217 (41%), Positives = 127/217 (58%), Gaps = 1/217 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L++ED+ + + ++ L+ GF VD GRQ + L + P+D V+LD LP + G Sbjct: 1 MRVLVVEDEPDLAETLREALTVDGFVVDVAGDGRQALDFLETQPFDLVVLDRDLPEVSGD 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++ R E+G +L+LTA LA+RV GL LGADDYL KPFA E+ ARL AL RR+ Sbjct: 61 EVCRLLVERGSIVRILMLTASVDLADRVRGLELGADDYLVKPFAYAELVARLRALARRSG 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 A + + G + +D +RIA + G P+ L PKEF++LE L + G L+ + + + Sbjct: 121 RAAGSVVVVGALRVDVTRRIADVEGFPVALMPKEFSVLEALALHDGAGLTAERLLAMAWA 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDF-IRTVHGIGYTL 216 E T AV V VH LRRKLG I + G GY L Sbjct: 181 EPYERTVGAVRVVVHSLRRKLGPALRIESAPGYGYRL 217 >UniRef50_P55701 Probable transcriptional regulatory protein y4xI n=5 Tax=Rhizobiales RepID=Y4XI_RHISN Length = 226 Score = 145 bits (367), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 82/220 (37%), Positives = 127/220 (57%), Gaps = 6/220 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR LL++ D+ ++ L GF+VD Q A +SA Y+ ++L+L LP DG Sbjct: 1 MRTLLVDTDLT--RAVRGALGDGGFAVDVVGTLEQASSAFFSASYEILLLELVLPDGDGL 58 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 D LR+ R G P +I++ D L +R+ GADD+L KP + E+ AR+ AL+RR+ Sbjct: 59 DWLRQLRSDGYSVPAVIMSRLDDLEKRISVFNSGADDFLRKPVSTDELIARMRALLRRST 118 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + GN+ DP R ++ G PL + +E +LE L+ AGR++ R +E++LY+ Sbjct: 119 QITCPIIEFGNLHFDPIGRQVSVDGHPLMIARRELCILEHLLNRAGRIVPRARLEDQLYS 178 Query: 181 WDEEVTSNAVEVHVHHLR----RKLGSDFIRTVHGIGYTL 216 +++EV+ NA+E ++ LR R + IRTV GIGYTL Sbjct: 179 FNDEVSGNALEAGIYRLRGYLSRSGATLRIRTVRGIGYTL 218 >UniRef50_Q1LIY7 Two component transcriptional regulator, winged helix family n=3 Tax=Burkholderiales RepID=Q1LIY7_RALME Length = 221 Score = 145 bits (367), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 93/220 (42%), Positives = 122/220 (55%), Gaps = 4/220 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L++ED + + + L G++ D G + L S YDA+ILDL LP +DG Sbjct: 1 MRVLIVEDSQTLAEALSQSLQSEGYACDTAADGVSALKFLASYRYDAIILDLMLPRLDGF 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +LR + PVL+L+AR+ L +RV L GADDYL KPF L E+ ARL AL+RR Sbjct: 61 GVLRALGREAHAAPVLVLSARELLDDRVRALDAGADDYLTKPFELAELLARLRALVRRPP 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + LRHG++ +DP RIA L L PKE+ LL+LL+R G LSR I E LY Sbjct: 121 QRDVPVLRHGDLEVDPRSRIARFKCIDLGLTPKEYGLLDLLLRRRGATLSRSQIFEHLYD 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTL 216 + + VEV V LR KL + I T G GY L Sbjct: 181 SRSDASDKVVEVIVSTLRTKLAQCGLDELIVTRRGFGYIL 220 >UniRef50_C3X1J5 Response regulator receiver:Transcriptional regulatory protein n=1 Tax=Oxalobacter formigenes HOxBLS RepID=C3X1J5_OXAFO Length = 223 Score = 145 bits (366), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 129/221 (58%), Gaps = 5/221 (2%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +IL+IED+ I + L G D G + L +D +ILD+ LPGMDG D Sbjct: 3 KILIIEDNQDIRYNLVDFLEAKGHKTDNTDDGLKALALLTLQSFDLIILDIMLPGMDGLD 62 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + RE R +G PVL L+ARD + +R++GL GADDYL KPF+L E+ R+ A++RR Sbjct: 63 LCRELRARGNETPVLFLSARDTVQDRIQGLSTGADDYLVKPFSLAELELRISAILRRVKR 122 Query: 122 QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTW 181 A + L+ +++++ + T A P+ L P F +L+LLM + V+SR+ +E +L+ Sbjct: 123 PAFHLLQVADIVMNLDELTVTRADVPVRLNPMMFKILKLLMLKSPSVVSREEMENELWG- 181 Query: 182 DEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTLGE 218 D+ S+++ H+H+LR G+ ++TV G G+TL E Sbjct: 182 DDRPDSDSLRTHIHNLRAVIDGPFGTSLLKTVSGFGWTLRE 222 >UniRef50_C8WMT6 Two component transcriptional regulator, winged helix family n=2 Tax=Coriobacteriaceae RepID=C8WMT6_EGGLE Length = 226 Score = 145 bits (366), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 89/226 (39%), Positives = 138/226 (61%), Gaps = 12/226 (5%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAP---YDAVILDLTLPGM 57 M++L++EDD L+ + + L + ++VD Q G+E L+ A YD V+LD+ LP Sbjct: 1 MKLLIVEDDRLLSNALARSL-RDAYAVD---QAFDGEEGLFYAAQDVYDLVVLDVMLPER 56 Query: 58 DGRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMR 117 DG +L R +G PVL+LTAR A A+++ GLR GADDYL KPF E+ AR+EA++R Sbjct: 57 DGFSVLEALRAQGVDTPVLMLTARSATADKLRGLRSGADDYLAKPFDRDELLARIEAILR 116 Query: 118 RTNGQAS-NELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEE 176 RT G+ + + L R A +A EPL LK K++ +LE L+ + G ++S++ + + Sbjct: 117 RTTGRRDVGIVAFKELALHTRTRQAFIADEPLALKGKQYDILEYLVSHQGSLISKERLFD 176 Query: 177 KLYTWDEEVTSNAVEVHVHHLRRKL---GSD-FIRTVHGIGYTLGE 218 K++ + + +SN VEV+V LR+ L G D +I+T+ G GY E Sbjct: 177 KIWGFMSDTSSNVVEVYVSALRKALAPTGYDRYIKTIRGAGYLFTE 222 >UniRef50_A4XD98 Response regulator receiver n=3 Tax=Actinomycetales RepID=A4XD98_SALTO Length = 228 Score = 145 bits (366), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 86/216 (39%), Positives = 121/216 (56%), Gaps = 2/216 (0%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 +LL+ED+ I D ++ L++ GF V G G A +LD+ LPG+ G +I Sbjct: 11 VLLVEDEPAIADLVRLYLARDGFGVHLERDGDAGLAAARRLRPVVCVLDIALPGLPGTEI 70 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQ 122 R RE G PV+ LTARD +R+ GL LGADDY+ KPF+ E+ AR+ A++RR G Sbjct: 71 CRRLREAGDWTPVIFLTARDDEVDRIVGLELGADDYVTKPFSPRELVARVRAVLRRVAGP 130 Query: 123 ASNELR-HGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTW 181 R G V LDP +R T AG+P+ L EF LL LM GRV +R+ + ++ + Sbjct: 131 PPGRPRIVGGVTLDPDRRTVTAAGDPVQLTSTEFDLLAHLMARPGRVFTREELLAGVWGY 190 Query: 182 DEEVTSNAVEVHVHHLRRKLGSD-FIRTVHGIGYTL 216 + V+VHV +R KLG + IRT G+GY + Sbjct: 191 AVPAGTRTVDVHVAQVRAKLGPESVIRTHRGVGYAV 226 >UniRef50_Q3MAE8 Response regulator receiver modulated diguanylate cyclase n=3 Tax=Cyanobacteria RepID=Q3MAE8_ANAVT Length = 684 Score = 145 bits (366), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 89/221 (40%), Positives = 128/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD LIG+ + L+ ++VD+ G +G YD ++LDL LP +DG Sbjct: 1 MRILLVEDDELIGELLVKSLTSQHYTVDFAKDGEEGWNFAELYTYDLILLDLILPKLDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 R+ R G + PVL+LT++D +V GL GADDY+ KPF E+ AR+ AL+RR Sbjct: 61 SFCRQLRASGNQTPVLLLTSQDTSITKVAGLDAGADDYVAKPFDFQELLARIRALLRRGG 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 L N+ LDP G+ L L PKE+ LLEL +RN+ R+ S + ++L++ Sbjct: 121 SALPPLLEWNNLRLDPSTCEVACDGKLLHLTPKEYGLLELFLRNSHRIFSCSALIDQLWS 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGS-----DFIRTVHGIGYTL 216 ++E T + V H+ LR+KL + D I TV+GIGY L Sbjct: 181 FEEPPTEDTVRSHIKGLRQKLKAAGVVEDPIDTVYGIGYRL 221 Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 2/113 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 R+++++DD I ++T LS G V + EA+ A + +IL + +P G + Sbjct: 396 RVMIVDDDPQILTALQTLLSAWGIKVYTLAHSQGFLEAMALAEPELLILKMEMPSTSGIE 455 Query: 62 ILREWREKGQRE--PVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARL 112 + + R++ Q P+L LT R R + GADDY+ KP E+ R+ Sbjct: 456 LCQIARQEPQWAGLPILFLTNRHDTLTRQQIFIAGADDYISKPIVEPELIGRI 508 >UniRef50_Q97LA9 Response regulator (CheY-like receiver domain and HTH DNA binding domain) n=1 Tax=Clostridium acetobutylicum RepID=Q97LA9_CLOAB Length = 221 Score = 145 bits (366), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 86/220 (39%), Positives = 125/220 (56%), Gaps = 4/220 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M +L++EDD + +K GL + + D G G L YDAVILD+ LP MDG Sbjct: 1 MHLLIVEDDEELSILLKKGLKQYNCTCDISHDGEDGLYNLEINSYDAVILDINLPKMDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + R+ R KG PVL+LTAR +RV GL GADDYL KPF E+ ARL AL+RR Sbjct: 61 TVCRKMRGKGISTPVLMLTARTDTDDRVLGLDSGADDYLGKPFEFKELRARLHALIRRNY 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + SNE++ ++ +D + + + +TL +E+ +LELL N ++S + I E ++ Sbjct: 121 NKPSNEIKIKDLNIDTKAKSVKVGEKLITLTAREYDILELLCYNYPNIVSAEEIIEHVWG 180 Query: 181 WDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 216 ++ SN + VH+ +LRRK+ G I T+ G GY L Sbjct: 181 DNDNQFSNVIRVHIANLRRKIKCSGGETLIETLKGKGYRL 220 >UniRef50_C7MDU8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=19 Tax=Actinobacteridae RepID=C7MDU8_BRAFD Length = 279 Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 85/225 (37%), Positives = 126/225 (56%), Gaps = 10/225 (4%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 +R+++IED+ I I L+ G+ V G G + D V+LD+ LPG DG Sbjct: 15 VRVVVIEDEPTITRAIADRLTAEGWEVSTALDGPSGVRTVAEVRPDVVVLDVMLPGFDGL 74 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR-- 118 ++ R + + PVL+LTARD + + GL +GADDY+ KPF++ E+ ARL+AL+RR Sbjct: 75 EVCRRI-QADEPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSIRELVARLKALLRRVR 133 Query: 119 -------TNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSR 171 + + L+ G++++D R AG P L P EF LL L G VL+R Sbjct: 134 RAAPPPPSESEKQEALQIGDLVIDRAGRRVMRAGAPAHLTPTEFDLLLCLANAPGTVLTR 193 Query: 172 KLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTL 216 + + ++ W + + V+ HV LRRKLGSD +RTVHG+GY L Sbjct: 194 EQLLADVWDWVDATGTRTVDSHVKALRRKLGSDLVRTVHGVGYAL 238 >UniRef50_C4RGF6 Two-component system response regulator receiver n=5 Tax=Actinomycetales RepID=C4RGF6_9ACTO Length = 231 Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 88/217 (40%), Positives = 123/217 (56%), Gaps = 5/217 (2%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 +L++ED+ I D ++ L++ GF V G G A A +LD+ LPG+ G +I Sbjct: 11 VLVVEDEPAIADLVRLYLTRDGFGVHLERDGVAGLAAARRLRPVACVLDIALPGLAGTEI 70 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQ 122 R RE G PVL LTARD +R+ GL LGADDY+ KPF+ E+ AR+ A++RRT G Sbjct: 71 CRRLREAGDWTPVLFLTARDDEVDRIIGLELGADDYVTKPFSPRELVARVRAVLRRTVGV 130 Query: 123 ASNELR---HGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 R G V LDP +R T++GEP+ L EF LL LM GRV +R + ++ Sbjct: 131 PEGVERVRTVGPVTLDPTRRTVTVSGEPIQLTYTEFDLLAHLMARPGRVFTRGELLAAVW 190 Query: 180 TWDEEVTSNAVEVHVHHLRRKLG--SDFIRTVHGIGY 214 + ++ V+VHV +R KLG + IRT G+GY Sbjct: 191 GYAAHSSTRTVDVHVAQVRAKLGGAAGVIRTHRGVGY 227 >UniRef50_C1ABP4 OmpR family two-component response regulator n=2 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ABP4_GEMAT Length = 231 Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 83/201 (41%), Positives = 119/201 (59%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LL EDD + D I GL ++ F VD G YDAVILD+ +PGMDG Sbjct: 1 MRLLLAEDDPQLRDAITRGLRELAFVVDSVGDGETAFTMALVNSYDAVILDILMPGMDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 I R R + P+L+LTARDA+ ER++GL GADDYL KPF E+ AR+ AL+RR + Sbjct: 61 AICRGLRARQMAVPILLLTARDAVDERIQGLDAGADDYLTKPFHFGELTARVRALLRRMS 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + + G++ +D + A G L L +EF LL L R+AGR++SR + E ++ Sbjct: 121 VVLPSTMAVGDLEIDTRLQQARRDGALLPLTAREFTLLAYLARHAGRIVSRGELAEHVWD 180 Query: 181 WDEEVTSNAVEVHVHHLRRKL 201 + + +N ++V+V LRRK+ Sbjct: 181 ENHDPNANLIDVYVSRLRRKV 201 >UniRef50_B2TEA5 Two component transcriptional regulator, winged helix family n=47 Tax=Burkholderia RepID=B2TEA5_BURPP Length = 232 Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 128/221 (57%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M++LL+EDD + + + F +DW G Q + L YDAV+LDL LPG+ G+ Sbjct: 1 MKLLLVEDDADLARWVMNLMQVEHFVIDWAQNGEQAETLLGLQCYDAVLLDLRLPGIGGK 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR-T 119 D+L R K PVL+LTA + ++V GADDY+ KPF E+ AR++AL+RR Sbjct: 61 DVLARLRRKRDNVPVLMLTANGSTDDKVACFSAGADDYVVKPFDARELVARIKALIRRQA 120 Query: 120 NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 G + G++ R L EPL L+ +E A+LE LM G+ +S+ + +K++ Sbjct: 121 AGDKGQSIECGDLRYLFDSREFMLQSEPLPLRRREHAILETLMLKQGKTVSKSTLMDKVF 180 Query: 180 TWDEEVTSNAVEVHVHHLRRKLG--SDFIRTVHGIGYTLGE 218 T D+E +++A+++++H LR+ L S I T+ G+GY L E Sbjct: 181 TLDDEPSADAIDIYIHRLRKHLAASSAKIMTLRGLGYILRE 221 >UniRef50_Q2SET4 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=16 Tax=Gammaproteobacteria RepID=Q2SET4_HAHCH Length = 233 Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 89/222 (40%), Positives = 127/222 (57%), Gaps = 6/222 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 +R+LL+EDD+ + + L+ S D G G + YD ++LD+ +P M+G Sbjct: 5 LRVLLVEDDIDLATTVLDYLALENMSCDHAANGVAGINLARANAYDVMLLDINMPRMNGL 64 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + R+ RE+G PVL+LTARD L ++VEG R G DDYL KPFA E+ RL+AL RR + Sbjct: 65 AMCRKLREEGVDTPVLMLTARDTLDDKVEGFRAGTDDYLVKPFAFAELIVRLQALSRRRS 124 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 GQA L G + +D +R G+PL L P + LLE LMR++ V+S+ +E+ L+ Sbjct: 125 GQA-RLLTVGPLQMDLDQRQVRREGKPLMLTPTGWQLLEKLMRHSPGVVSKSDLEQVLWP 183 Query: 181 WDEEVTSNAVEVHVHHLR----RKLGSDFIRTVHGIGYTLGE 218 D SNA +VH++ LR + S I TV G G GE Sbjct: 184 -DSPPDSNAFKVHLYKLRMAVDKPFASALIHTVPGQGVRCGE 224 >UniRef50_Q15TL9 Two component transcriptional regulator, winged helix family n=2 Tax=Alteromonadales RepID=Q15TL9_PSEA6 Length = 240 Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 130/223 (58%), Gaps = 6/223 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 + +LL+EDD+ + + L D + G G + Y +ILD+ +P MDG Sbjct: 19 INVLLVEDDIDLASTVVDYLELESMQCDHASNGLMGLHLIERQSYQVIILDINMPKMDGI 78 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + + RE G PVL+LTARD L ++EG + G+DDYL KPFA+ E+ AR++ L RR + Sbjct: 79 TLCKRMRELGIDTPVLMLTARDTLDNKLEGFQAGSDDYLVKPFAMQELVARIQVLGRRRS 138 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G+ L G++ D +RIA+ PL L P +LE+LMR + + ++R+ I + ++ Sbjct: 139 GEV-KRLSVGDLNFDLTQRIASFKQHPLKLSPTALKILEVLMRASPQTVTRQKIIQSVW- 196 Query: 181 WDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTLGEK 219 D++ SN+++VH++HLR++L S + TV +G+ + +K Sbjct: 197 GDDQPDSNSLKVHIYHLRKQLDAYEASITLDTVASVGFAIKKK 239 >UniRef50_A9CLL8 Two component response regulator n=1 Tax=Agrobacterium tumefaciens str. C58 RepID=A9CLL8_AGRT5 Length = 224 Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 84/223 (37%), Positives = 125/223 (56%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M++LLIEDD + D +K LS+ G +D +EA+ A YD V++D LP DG Sbjct: 1 MKLLLIEDDPEMTDALKVALSQHGIVLDAVGDLATAREAIIMADYDIVLIDRQLPDGDGS 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 L + R G +I++A + ER+ GL GADDYL KPF + E+ AR+ A++RR Sbjct: 61 TFLADLRRAGSNTRSIIISALRSTDERISGLNDGADDYLPKPFEIPELVARMSAVLRRAP 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 L GNV D + G L L +E ++E L+RN GR + R +E ++Y+ Sbjct: 121 TTGPFVLSAGNVTYDRVSCDVHVNGIRLALTRRELLIIETLLRNRGRTVLRSSLEGQVYS 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYTLGEK 219 +D+E+ SN++E ++ LRRKLG I+ + GIGY L E+ Sbjct: 181 FDDEIQSNSLESNMSRLRRKLGEAEADIVIKNIRGIGYYLHEQ 223 >UniRef50_B8HQE6 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8HQE6_CYAP4 Length = 228 Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 82/219 (37%), Positives = 127/219 (57%), Gaps = 4/219 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RIL++ED+ I ++ GL GF T + + +D +ILDL LPG DG Sbjct: 3 RILIVEDEPRIAAFVEKGLRSHGFVTSVATDANEALDLALGGAFDLLILDLGLPGQDGLQ 62 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 +L + R +G+ P++ILTARD + +++ GADDYL KPF E+ R++A +R G Sbjct: 63 VLGQLRGQGESLPIIILTARDDIRDKIASFEGGADDYLTKPFRFEELLLRVKARLRTNYG 122 Query: 122 ----QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEK 177 Q + L+ NV+LD R + L L +EF L E R+ G+VLSR+ + ++ Sbjct: 123 VPKRQEESVLKCDNVLLDLRTRKVKVGDRWLELSAREFTLAETFFRHPGQVLSREQLLDR 182 Query: 178 LYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTL 216 ++ +D + SN V+V+V +LR+KLG++ I TV G+GY L Sbjct: 183 VWGYDYDPGSNIVDVYVGYLRKKLGNELIETVRGMGYRL 221 >UniRef50_Q21ZH1 Two component transcriptional regulator, winged helix family n=2 Tax=Comamonadaceae RepID=Q21ZH1_RHOFD Length = 239 Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 96/234 (41%), Positives = 135/234 (57%), Gaps = 23/234 (9%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 +L++EDD L+ D + L++ G +V + G + + L S +D VILDL LP + G ++ Sbjct: 4 LLIVEDDELLRDALGAQLTQAGHTVTPASDGERAQALLESNRFDGVILDLGLPKVSGMEV 63 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN-- 120 LR R++ PVL+LTARD + +RV+GL GADDYL KPF++ E+ ARL A++RR Sbjct: 64 LRWLRKRLPALPVLVLTARDGVEDRVQGLNAGADDYLTKPFSMAELQARLGAMLRRARLP 123 Query: 121 --GQASNELRHGNVMLDPGKRI--ATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEE 176 G + + G L R+ A L E L L +E+ALL LL+ NAG+V+SR E+ Sbjct: 124 AFGGSLELVTDGARRLRVDARLPQAWLGDEALELTQREWALLSLLVTNAGQVISR---ED 180 Query: 177 KLYTWDEE------------VTSNAVEVHVHHLRRKLGSD--FIRTVHGIGYTL 216 L W E V SNA+EV++H LRRKL IR V G+GY L Sbjct: 181 VLCAWQSEPGDGTSTGASAGVGSNALEVYIHRLRRKLADSGLNIRNVRGLGYML 234 >UniRef50_Q1IUY4 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IUY4_ACIBL Length = 232 Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 82/219 (37%), Positives = 130/219 (59%), Gaps = 4/219 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL+ ED+ + + ++ GL++ G SV G + S +DA++LD+ LPGMDG Sbjct: 1 MRILVAEDEKRLLELLRNGLAEEGHSVITSMNGVDALDIAMSGEFDALLLDVMLPGMDGF 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++ R R KG++ P+L+LTARDA ++ + GL GADDY+ KPF+ E+ ARL A+ RRT Sbjct: 61 EVARRLRHKGRQVPILMLTARDAESDIIRGLDNGADDYVTKPFSFSELLARLRAVTRRTG 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 S+ L ++ LD P+ L EF LL+ LM+NAGR +SR+ + ++ Sbjct: 121 PHRSSTLVCEDLTLDSASHEVFRGDRPIHLTRTEFLLLQKLMQNAGRPVSRQSLIGNVWG 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYT 215 +D + +N ++ + LR+K+ + I+TV G GY+ Sbjct: 181 YDRAIENNTLDAFIRLLRQKVDTQGHPKLIQTVRGFGYS 219 >UniRef50_A3VEN7 DNA-binding response regulator n=8 Tax=Alphaproteobacteria RepID=A3VEN7_9RHOB Length = 242 Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 85/222 (38%), Positives = 135/222 (60%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L++ED + + + +++G + D + ++ L YDA++LD+ LP G Sbjct: 20 MRVLMVEDATDLAETVSARFARVGIACDLAATVTEAEDHLAVQRYDALVLDINLPDGSGT 79 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 D+LR R G R PVL+LTA ++ RV+ L L ADDYL KPF E+ ARL AL+RR Sbjct: 80 DLLRRLRTGGNRTPVLMLTALVSVDNRVDALDLRADDYLVKPFDQRELEARLRALVRREA 139 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 Q S+ ++ G + P + ATL GE +TL +E ALLELL+R + LS++ + + L+ Sbjct: 140 AQKSDTIQLGALSYSPSQMSATLDGEKVTLTRREAALLELLVRFPEQYLSKERLYDGLFA 199 Query: 181 WDE-EVTSNAVEVHVHHLRRKL-GSDF-IRTVHGIGYTLGEK 219 +D+ +V NA+E+++ LR++L GS I T G+GY + ++ Sbjct: 200 FDDADVGLNAIELYIARLRKRLAGSSVGIETQRGVGYRIVDR 241 >UniRef50_A6CWR0 Two-component system response regulator (Pho family) protein n=5 Tax=Vibrionales RepID=A6CWR0_9VIBR Length = 224 Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 85/222 (38%), Positives = 125/222 (56%), Gaps = 6/222 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+ILLIEDD I + G + G +V T G G +A +D +ILD+ LP DG Sbjct: 1 MKILLIEDDSHIAKFLVNGFQQEGITVTHSTDGVDGLHEAVTADFDVIILDIMLPKKDGF 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++L E R +G PV+IL+A+ ++ ERV+GL+ GADDYL KPFA E+ AR + LMRR Sbjct: 61 EVLAELRGQGHATPVIILSAKHSVEERVQGLQSGADDYLVKPFAFPELLARCQTLMRRGK 120 Query: 121 GQASN--ELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 + EL +G + LD K + + + +EF L++LL+ N V+S+ I E + Sbjct: 121 PPSPQALELNYGPLNLDLLKHTLQREQQNIAINQREFMLMKLLLENPETVMSKTAILEHV 180 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTL 216 + + +N V+V V LR K+ F I T+ G+GY L Sbjct: 181 WGHQFDPQTNVVDVLVCRLRSKVDKGFATPLIHTLRGVGYVL 222 >UniRef50_C1XLR2 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=5 Tax=Thermaceae RepID=C1XLR2_MEIRU Length = 216 Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 91/216 (42%), Positives = 131/216 (60%), Gaps = 6/216 (2%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 R+LLIEDD + + ++ GL G++V G +G L P + V+LD+ LPG DG Sbjct: 3 RVLLIEDDAGVREALRLGLELEGYTVLEAANGAEGLRRLAENP-ELVVLDVLLPGGDGFG 61 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 +LRE R + PVL+LTA D + RV+GLR GADDYL KP+AL E+ ARLEAL+RR+ Sbjct: 62 VLREIRRQSA-VPVLMLTALDEVEWRVKGLREGADDYLVKPYALSELVARLEALLRRSK- 119 Query: 122 QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTW 181 + L + +V+L PG+ A G L L PK LL+ + +A R+L ++ + ++ W Sbjct: 120 RPEEVLSYADVVLYPGRMEARRGGRLLELSPKALQLLQCFLEHAERLLPKETLMQR--VW 177 Query: 182 DEEVTSNAVEVHVHHLRRKLGSD-FIRTVHGIGYTL 216 +EV N +EVH+ LRR+LG + T+ G GY L Sbjct: 178 GQEVEPNTLEVHLSALRRELGEPMLLHTLRGHGYIL 213 >UniRef50_Q03TF3 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=1 Tax=Lactobacillus brevis ATCC 367 RepID=Q03TF3_LACBA Length = 230 Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 82/218 (37%), Positives = 134/218 (61%), Gaps = 6/218 (2%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 ++L++ED+ + I + + + F G QG+ +DA+ILDL LPG G D Sbjct: 6 KVLVVEDEKALSADIVELIEPICETTTAF-DGEQGEFLASQGVFDAIILDLMLPGESGLD 64 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 +L R +G + PVLILTA+D +A+++ G GADDY+ KPF E+ AR++AL++RT Sbjct: 65 LLLHIRNQGVKTPVLILTAKDTIADKLRGFNDGADDYVTKPFHREELLARMKALLKRTGH 124 Query: 122 -QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 +S+ + G + ++ K +AT G PLTLK +EF LL L+ N G +++++ I +L+ Sbjct: 125 LNSSDTIALGQLEINTSKHLATFNGAPLTLKGREFDLLAYLVGNPGTIITKEQIFNRLWG 184 Query: 181 WDEEVTSNAVEVHVHHLRRKL---GSDF-IRTVHGIGY 214 +D E + + VEV++ +LR++L GSD +RT+ GY Sbjct: 185 FDSETSLSVVEVYMSNLRKELKHAGSDLSLRTIRNAGY 222 >UniRef50_A5VAJ0 Two component transcriptional regulator, winged helix family n=1 Tax=Sphingomonas wittichii RW1 RepID=A5VAJ0_SPHWW Length = 226 Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 87/222 (39%), Positives = 129/222 (58%), Gaps = 6/222 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 + +LL+EDD + ++ L +MG V GR EA+ +DA+ILDL LP +DG Sbjct: 3 LNLLLVEDDAALVAMLERDLREMGHHVSVAMDGRSAVEAVTRDRFDAMILDLMLPTVDGL 62 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALM--RR 118 +L+ R+ G PV+IL+A E+VEGL GADDY+ KP E+ ARL A++ RR Sbjct: 63 SVLQRIRQDGMGLPVIILSALGRPVEKVEGLDAGADDYVVKPVTAAELNARLNAILRGRR 122 Query: 119 TNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 Q + LR G++++ P + A G+ + L EF LL L+RN +++R ++ EK+ Sbjct: 123 QPAQDGDTLRAGDIVVSPARFRAWRDGKAVDLSKIEFNLLLELVRNVDSIVTRAMLLEKV 182 Query: 179 YTWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 216 + +D E +N V+VH+ LR KL G D I TV G+GY L Sbjct: 183 WGYDFEPATNLVDVHIRRLRAKLTANGGGDPISTVRGVGYLL 224 >UniRef50_P0A4H8 Transcriptional regulatory protein ciaR n=73 Tax=Lactobacillales RepID=CIAR_STRR6 Length = 224 Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 86/227 (37%), Positives = 134/227 (59%), Gaps = 19/227 (8%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFS-VDWFTQGRQ---GKEALYSAP---YDAVILDLT 53 ++ILL+EDD+ GLS F +D F Q G+E LY A YD ++LDL Sbjct: 2 IKILLVEDDL--------GLSNSVFDFLDDFADVMQVFDGEEGLYEAESGVYDLILLDLM 53 Query: 54 LPGMDGRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLE 113 LP +G +L+E REKG PVLI+TA+++L ++ G LGADDYL KPF L E+ R++ Sbjct: 54 LPEKNGFQVLKELREKGITTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQ 113 Query: 114 ALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKL 173 AL++R+ N L +GN++++ + P+ L KEF LL ++N +L + Sbjct: 114 ALLKRSGKFNENTLTYGNIVVNLSTNTVKVEDTPVELLGKEFDLLVYFLQNQNVILPKTQ 173 Query: 174 IEEKLYTWDEEVTSNAVEVHVHHLRRKL-GSDF---IRTVHGIGYTL 216 I ++L+ +D + T + VEV+V +R+KL G+ F ++T+ +GY L Sbjct: 174 IFDRLWGFDSDTTISVVEVYVSKVRKKLKGTTFAENLQTLRSVGYLL 220 >UniRef50_C1XFY4 Two component transcriptional regulator, winged helix family n=2 Tax=Meiothermus RepID=C1XFY4_MEIRU Length = 218 Score = 144 bits (362), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 91/214 (42%), Positives = 130/214 (60%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LL+ED +G ++ LS GF+VD L S PYD V+LDL LP DG Sbjct: 1 MRLLLVEDHTGLGRLLQDTLSGQGFAVDLAEDMASADGLLQSFPYDLVVLDLGLPDGDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++L+ R +G++ PVLILTARD LA+RV+GL GADDYL KPF E+ AR+ AL+RR Sbjct: 61 ELLQSLRARGEKMPVLILTARDGLADRVKGLEAGADDYLVKPFHPEELVARIRALLRRAR 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G+ +N + G + LD + A G+ + L +E+ALLE L +A SR+ + EK++ Sbjct: 121 GEPTNRFKVGRLELDMELKRAWWDGQSVHLSGREYALLEFLALHAEGYFSREALMEKVWP 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGY 214 + + V+ +V +LRRKL + I TV +GY Sbjct: 181 GEAAIDPRTVDTYVRYLRRKLSPEAIETVRNLGY 214 >UniRef50_A6TPN8 Two component transcriptional regulator, winged helix family n=7 Tax=Bacteria RepID=A6TPN8_ALKMQ Length = 225 Score = 144 bits (362), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 130/225 (57%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL+IED++ + + + L K ++VD G G + S YD ++LD+ LP MDG Sbjct: 1 MRILIIEDEIPLAEALSQMLKKNNYTVDLLHDGESGLDYALSDIYDLILLDIMLPKMDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 IL+E R++G PV++LTA+ + ++V GL GADDYL KPFA E+ AR+ A+ RR Sbjct: 61 SILKEIRQEGIATPVILLTAKGEITDKVMGLDSGADDYLAKPFATEELLARIRAISRR-K 119 Query: 121 GQA--SNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 G+ L++G+V L+P + + + L KE LL L+ S++LI EK+ Sbjct: 120 GEVILDGTLKYGDVQLNPSTLKLSKESKEVKLTLKESDLLAFLILRNNLASSKELIIEKI 179 Query: 179 YTWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTLGEK 219 + +D +V N VEV++ LR+KL I T+ G+GY L K Sbjct: 180 WGFDSDVEHNHVEVYISFLRKKLLFLTSKVVINTLRGVGYILEVK 224 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P52076 Transcriptional regulatory protein qseB n=74 Tax... 337 2e-91 UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC... 327 1e-88 UniRef50_Q2JAC4 Two component transcriptional regulator, winged ... 326 3e-88 UniRef50_B8DZ94 Two component transcriptional regulator, winged ... 326 3e-88 UniRef50_C8WRL2 Two component transcriptional regulator, winged ... 325 6e-88 UniRef50_C5CE19 Two component transcriptional regulator, winged ... 325 6e-88 UniRef50_B5JD22 Response regulator receiver domain protein n=1 T... 325 8e-88 UniRef50_P66796 Transcriptional regulatory protein qseB n=58 Tax... 325 9e-88 UniRef50_Q2IUG0 Two component transcriptional regulator, winged ... 321 1e-86 UniRef50_A4SHT1 Two-component system response regulator n=10 Tax... 320 2e-86 UniRef50_B2J1E6 Multi-component transcriptional regulator, winge... 320 2e-86 UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax... 320 3e-86 UniRef50_B7K7W8 Multi-component transcriptional regulator, winge... 319 4e-86 UniRef50_B1ZVS5 Two component transcriptional regulator, winged ... 318 6e-86 UniRef50_A4VI02 DNA-binding response regulator n=12 Tax=Proteoba... 318 6e-86 UniRef50_UPI0001C16F99 Multi-component Transcriptional regulator... 318 7e-86 UniRef50_A7ZEI3 Transcriptional activator protein CopR n=9 Tax=B... 318 7e-86 UniRef50_C7NAQ8 Two component transcriptional regulator, winged ... 318 9e-86 UniRef50_B2IXN9 Multi-component transcriptional regulator, winge... 317 1e-85 UniRef50_D2QKB6 Two component transcriptional regulator, winged ... 317 2e-85 UniRef50_A6WIX6 Two component transcriptional regulator, winged ... 317 2e-85 UniRef50_B5VWD3 Multi-component transcriptional regulator, winge... 317 3e-85 UniRef50_B8HL49 Multi-component transcriptional regulator, winge... 316 4e-85 UniRef50_A0RG02 Two-component response regulator n=92 Tax=Bacter... 316 4e-85 UniRef50_Q2SPE2 Response regulator consisting of a CheY-like rec... 315 5e-85 UniRef50_B7K2S9 Two component transcriptional regulator, winged ... 315 5e-85 UniRef50_B9KBQ0 Response regulator n=6 Tax=Thermotogaceae RepID=... 315 5e-85 UniRef50_C5NUZ8 Response regulator ArlR n=4 Tax=Bacteria RepID=C... 315 8e-85 UniRef50_B2JBG7 Two component transcriptional regulator, winged ... 314 1e-84 UniRef50_Q3SMF6 Two component Transcriptional regulator, Winged ... 313 2e-84 UniRef50_B4WPA6 Response regulator receiver domain protein n=1 T... 313 2e-84 UniRef50_D1BPS5 Two component transcriptional regulator, winged ... 313 2e-84 UniRef50_Q3B3K7 Two component transcriptional regulator, winged ... 313 3e-84 UniRef50_Q88JD6 DNA-binding response regulator n=6 Tax=Gammaprot... 313 3e-84 UniRef50_B4WMF1 Response regulator receiver domain protein n=2 T... 313 3e-84 UniRef50_B9XE94 Two component transcriptional regulator, winged ... 313 4e-84 UniRef50_Q3MGM2 Sensor protein n=22 Tax=Bacteria RepID=Q3MGM2_ANAVT 312 5e-84 UniRef50_C4XS15 OmpR family two-component response regulator n=2... 312 6e-84 UniRef50_B4WME0 Response regulator receiver domain protein n=1 T... 312 6e-84 UniRef50_UPI00016B25CE two component transcriptional regulator, ... 311 9e-84 UniRef50_B6J7N7 Transcriptional regulatory protein n=8 Tax=Gamma... 311 9e-84 UniRef50_D2QX61 Two component transcriptional regulator, winged ... 311 1e-83 UniRef50_C6QDD0 Two component transcriptional regulator, winged ... 310 1e-83 UniRef50_A8ZNT0 Two-component transcriptional regulator/diguanyl... 310 2e-83 UniRef50_Q026B5 Two component heavy metal response transcription... 310 3e-83 UniRef50_A5WDA5 Two component transcriptional regulator, winged ... 309 5e-83 UniRef50_Q01473 Protein rcaC n=1 Tax=Fremyella diplosiphon RepID... 308 6e-83 UniRef50_UPI00017468BB two component transcriptional regulator, ... 308 8e-83 UniRef50_Q20YF2 Two component transcriptional regulator, winged ... 308 1e-82 UniRef50_A6CDX9 Two component transcriptional regulator, winged ... 307 1e-82 UniRef50_C7LY45 Two component transcriptional regulator, winged ... 307 1e-82 UniRef50_B2IZ13 Sensor protein n=11 Tax=Cyanobacteria RepID=B2IZ... 307 2e-82 UniRef50_Q15Y65 Two component transcriptional regulator, winged ... 307 2e-82 UniRef50_O07776 Transcriptional regulatory protein tcrA n=21 Tax... 307 2e-82 UniRef50_D2PLZ1 Two component transcriptional regulator, winged ... 307 2e-82 UniRef50_A0KN62 DNA-binding response regulator n=41 Tax=Gammapro... 307 2e-82 UniRef50_C7PP48 Two component transcriptional regulator, winged ... 306 3e-82 UniRef50_B5W2T9 Multi-component transcriptional regulator, winge... 306 3e-82 UniRef50_B4WG55 Response regulator receiver domain protein n=1 T... 306 3e-82 UniRef50_Q8DHN5 Two-component response regulator n=2 Tax=Chrooco... 306 3e-82 UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacter... 306 4e-82 UniRef50_A4J2J4 Two component transcriptional regulator, winged ... 305 5e-82 UniRef50_C8KZR7 Two component transcriptional regulator n=5 Tax=... 305 5e-82 UniRef50_Q21EC1 Two component transcriptional regulator, winged ... 305 5e-82 UniRef50_C7PAJ7 Two component transcriptional regulator, winged ... 305 7e-82 UniRef50_Q2RPG3 Two component transcriptional regulator, winged ... 305 9e-82 UniRef50_Q12PS6 Two component transcriptional regulator, winged ... 305 1e-81 UniRef50_P39663 Alkaline phosphatase synthesis transcriptional r... 304 1e-81 UniRef50_A6X2C4 Two component transcriptional regulator, winged ... 304 1e-81 UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria... 304 2e-81 UniRef50_Q2T4E0 DNA-binding response regulator n=76 Tax=Bacteria... 304 2e-81 UniRef50_D1B9J7 Two component transcriptional regulator, winged ... 303 2e-81 UniRef50_C0QL69 Transcriptional regulatory protein n=1 Tax=Desul... 303 2e-81 UniRef50_A5UWJ8 Two component transcriptional regulator, winged ... 303 2e-81 UniRef50_B4WSX3 Response regulator receiver domain protein n=1 T... 303 2e-81 UniRef50_B8G179 Two component transcriptional regulator, winged ... 303 2e-81 UniRef50_Q1AZL3 Two component transcriptional regulator, winged ... 303 3e-81 UniRef50_B4VMC7 Response regulator receiver domain protein n=1 T... 302 4e-81 UniRef50_B2HUW9 Response regulator consisting of a CheY-like rec... 302 4e-81 UniRef50_B2JHN0 Two component transcriptional regulator, winged ... 302 5e-81 UniRef50_B8HQE6 Two component transcriptional regulator, winged ... 302 5e-81 UniRef50_Q2S8G9 Response regulator consisting of a CheY-like rec... 302 5e-81 UniRef50_Q6FA81 Putative two-component response regulator n=1 Ta... 302 5e-81 UniRef50_A0LPJ2 Two component transcriptional regulator, winged ... 302 6e-81 UniRef50_A0PWB4 Response regulator mprA n=284 Tax=Bacteria RepID... 302 6e-81 UniRef50_B1HZW1 Transcriptional regulatory protein cutR (Defecti... 302 6e-81 UniRef50_Q1IUY4 Two component transcriptional regulator, winged ... 302 7e-81 UniRef50_B4B6S6 Multi-component transcriptional regulator, winge... 301 1e-80 UniRef50_B0KKE4 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_Q48H36 DNA-binding response regulator n=6 Tax=Gammaprot... 301 1e-80 UniRef50_C7MME5 Response regulator with CheY-like receiver domai... 300 2e-80 UniRef50_C0VPI8 Two-component response regulator n=4 Tax=Acineto... 300 2e-80 UniRef50_A3QGG3 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_A6CWR0 Two-component system response regulator (Pho fam... 300 3e-80 UniRef50_Q2G7V2 Two component transcriptional regulator, winged ... 300 3e-80 UniRef50_C7N0N0 Response regulator with CheY-like receiver domai... 300 3e-80 UniRef50_C9NWS1 DNA-binding heavy metal response regulator n=1 T... 299 5e-80 UniRef50_Q1IVX4 Two component transcriptional regulator, winged ... 299 5e-80 UniRef50_A4CE30 Probable two-component response regulator transc... 299 5e-80 UniRef50_Q6F8E2 Transcriptional regulator n=19 Tax=Acinetobacter... 299 5e-80 UniRef50_C8PY86 DNA-binding response regulator n=1 Tax=Enhydroba... 298 6e-80 UniRef50_P30843 Transcriptional regulatory protein basR n=126 Ta... 298 6e-80 UniRef50_B4RXL0 Response regulator n=2 Tax=Gammaproteobacteria R... 298 6e-80 UniRef50_Q97LA9 Response regulator (CheY-like receiver domain an... 298 7e-80 UniRef50_C0ZDC3 Two-component response regulator n=1 Tax=Breviba... 298 1e-79 UniRef50_C6CH89 Two component transcriptional regulator, winged ... 298 1e-79 UniRef50_B1ZS16 Two component transcriptional regulator, winged ... 297 1e-79 UniRef50_Q44006 Transcriptional activator protein czcR n=330 Tax... 297 2e-79 UniRef50_A5EYW4 Transcriptional regulator n=31 Tax=Bacteria RepI... 297 2e-79 UniRef50_B8G869 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_Q2BR69 Two component Transcriptional regulator, Winged ... 297 2e-79 UniRef50_C1SIE7 Response regulator with CheY-like receiver domai... 296 3e-79 UniRef50_B0C620 Two component transcriptional regulator, winged ... 296 3e-79 UniRef50_B8H4H9 Two-component response regulator protein n=9 Tax... 296 4e-79 UniRef50_C0GHG5 Two component transcriptional regulator, winged ... 296 4e-79 UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional r... 296 5e-79 UniRef50_Q8A9Y3 Two-component system response regulator n=8 Tax=... 296 5e-79 UniRef50_B2A0K7 Two component transcriptional regulator, winged ... 296 5e-79 UniRef50_A1V147 DNA-binding response regulator n=182 Tax=cellula... 295 5e-79 UniRef50_B4WP26 Response regulator receiver domain protein n=1 T... 295 6e-79 UniRef50_A4AF30 Two component transcriptional regulator, winged ... 295 6e-79 UniRef50_A7HL55 Two component transcriptional regulator, winged ... 295 7e-79 UniRef50_A5VEY8 Two component transcriptional regulator, winged ... 295 7e-79 UniRef50_A9BQG9 Two component transcriptional regulator, winged ... 295 7e-79 UniRef50_B5D1V8 Putative uncharacterized protein n=2 Tax=Bactero... 295 9e-79 UniRef50_Q2T1W7 DNA-binding response regulator n=22 Tax=Proteoba... 295 1e-78 UniRef50_A9BP99 Two component transcriptional regulator, winged ... 294 1e-78 UniRef50_C0YVQ4 Response regulator n=1 Tax=Chryseobacterium gleu... 294 2e-78 UniRef50_B1VIL1 Two-component system response regulator n=3 Tax=... 294 2e-78 UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mits... 293 2e-78 UniRef50_C9Z8Q7 Putative two-component response regulator n=1 Ta... 293 2e-78 UniRef50_UPI0001C16C1D manR (Two component Transcriptional regul... 293 3e-78 UniRef50_Q6AQP4 Probable two-component system response regulator... 293 3e-78 UniRef50_A9HHL1 Probable two-component response regulator transc... 293 3e-78 UniRef50_A0YP32 Two-component response regulator n=1 Tax=Lyngbya... 293 3e-78 UniRef50_C7IFX1 Two component transcriptional regulator, winged ... 293 3e-78 UniRef50_B5JI66 Response regulator receiver domain protein n=1 T... 293 3e-78 UniRef50_A9H3V0 Two component Transcriptional regulator n=96 Tax... 293 4e-78 UniRef50_C1ZD82 Response regulator with CheY-like receiver domai... 292 4e-78 UniRef50_C6QB49 Two component transcriptional regulator, winged ... 292 4e-78 UniRef50_C8WKQ8 Two component transcriptional regulator, winged ... 292 4e-78 UniRef50_Q20WN2 Two component transcriptional regulator, winged ... 292 5e-78 UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostri... 292 5e-78 UniRef50_Q3M194 Multi-component transcriptional regulator, winge... 292 5e-78 UniRef50_A8LHM5 Two component transcriptional regulator, winged ... 292 5e-78 UniRef50_Q2RYR0 Response regulator receiver domain protein n=2 T... 292 5e-78 UniRef50_Q1AZ24 Two component transcriptional regulator, winged ... 292 6e-78 UniRef50_C6CWW2 Two component transcriptional regulator, winged ... 292 7e-78 UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=... 292 7e-78 UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actino... 292 7e-78 UniRef50_Q12T20 Two component transcriptional regulator, winged ... 292 7e-78 UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candi... 292 8e-78 UniRef50_A1HRL8 Two component transcriptional regulator, winged ... 291 1e-77 UniRef50_Q2T0V1 DNA-binding response regulator n=139 Tax=cellula... 291 1e-77 UniRef50_UPI00016C506D two component transcriptional regulator, ... 291 1e-77 UniRef50_Q3MAE8 Response regulator receiver modulated diguanylat... 291 1e-77 UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate reg... 291 1e-77 UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacter... 291 1e-77 UniRef50_Q81I47 Two-component response regulator n=76 Tax=Firmic... 291 1e-77 UniRef50_C6VUR1 Two component transcriptional regulator, winged ... 291 1e-77 UniRef50_C6LI81 DNA-binding response regulator DltR n=2 Tax=Clos... 290 2e-77 UniRef50_Q1LCD6 Two component transcriptional regulator, winged ... 290 2e-77 UniRef50_C6J181 Two-component system response regulator n=1 Tax=... 290 2e-77 UniRef50_C1TR79 Response regulator with CheY-like receiver domai... 290 2e-77 UniRef50_Q480M1 Response regulator n=1 Tax=Colwellia psychreryth... 290 2e-77 UniRef50_Q3Z753 DNA-binding response regulator n=2 Tax=Dehalococ... 289 4e-77 UniRef50_B9K181 Two component response regulator n=3 Tax=Rhizobi... 289 4e-77 UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=... 289 4e-77 UniRef50_B7S3C0 Response regulator receiver domain protein n=1 T... 288 6e-77 UniRef50_C1ABP4 OmpR family two-component response regulator n=2... 288 7e-77 UniRef50_Q2KYE7 Two-component system response regulator n=7 Tax=... 288 8e-77 UniRef50_C0Z5X8 Two-component response regulator n=143 Tax=Firmi... 288 8e-77 UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6... 288 9e-77 UniRef50_Q49XM7 Response regulator arlR n=145 Tax=Bacteria RepID... 288 9e-77 UniRef50_Q47456 Transcriptional regulatory protein pcoR n=99 Tax... 288 1e-76 UniRef50_A1RNU1 Two component transcriptional regulator, winged ... 288 1e-76 UniRef50_Q1H1R2 Two component transcriptional regulator, winged ... 288 1e-76 UniRef50_P76340 Probable transcriptional regulatory protein yedW... 288 1e-76 UniRef50_A7IE82 Two component transcriptional regulator, winged ... 287 1e-76 UniRef50_C4ZBN4 Response regulator n=31 Tax=Bacteria RepID=C4ZBN... 287 1e-76 UniRef50_Q02A31 Two component transcriptional regulator, winged ... 287 2e-76 UniRef50_B7QTW7 Two-component response regulator n=1 Tax=Ruegeri... 287 2e-76 UniRef50_C1XYD1 Response regulator with CheY-like receiver domai... 287 2e-76 UniRef50_B7KB48 Multi-component transcriptional regulator, winge... 287 2e-76 UniRef50_A6TPN8 Two component transcriptional regulator, winged ... 287 2e-76 UniRef50_C3QD36 Two-component system response regulator n=8 Tax=... 287 2e-76 UniRef50_Q030C5 DNA-binding response regulator, OmpR family (Rec... 287 2e-76 UniRef50_A6W7C9 Two component transcriptional regulator, winged ... 287 2e-76 UniRef50_C7MDU8 Response regulator with CheY-like receiver domai... 287 2e-76 UniRef50_C6RM27 Transcriptional regulatory protein QseB n=1 Tax=... 287 2e-76 UniRef50_C2KX66 Two component response regulator n=2 Tax=Lachnos... 287 3e-76 UniRef50_A5UPS1 Two component transcriptional regulator, winged ... 286 3e-76 UniRef50_B8G7R1 Two component transcriptional regulator, winged ... 286 3e-76 UniRef50_A1TXC3 Two component transcriptional regulator, winged ... 286 3e-76 UniRef50_B0TXH6 Response regulator receiver protein n=18 Tax=Fra... 286 4e-76 UniRef50_B2TDT5 Two component transcriptional regulator, winged ... 286 4e-76 UniRef50_A5N1L7 Predicted transcriptional regulator n=8 Tax=Bact... 286 4e-76 UniRef50_Q2JX56 DNA-binding response regulator n=29 Tax=Cyanobac... 286 4e-76 UniRef50_UPI0001745DFF Response regulator consisting of a CheY-l... 286 4e-76 UniRef50_Q2SKY7 Response regulator consisting of a CheY-like rec... 285 5e-76 UniRef50_A9AWM9 Two component transcriptional regulator, winged ... 285 5e-76 UniRef50_A8F5U3 Two component transcriptional regulator, winged ... 285 5e-76 UniRef50_A0KWE7 Two component transcriptional regulator, winged ... 285 6e-76 UniRef50_B9XEM3 Two component transcriptional regulator, winged ... 285 6e-76 UniRef50_D1VIP6 Two component transcriptional regulator, winged ... 285 7e-76 UniRef50_C0Z6J5 Two-component response regulator n=1 Tax=Breviba... 285 7e-76 UniRef50_A4AIS8 Two-component system, regulatory protein n=2 Tax... 285 7e-76 UniRef50_C8VW64 Two component transcriptional regulator, winged ... 285 8e-76 UniRef50_UPI0001B559F0 two-component system, response regulator ... 285 8e-76 UniRef50_Q2JED0 Two component transcriptional regulator, winged ... 285 8e-76 UniRef50_B7H0F7 Transcriptional activator protein irlR n=7 Tax=A... 285 8e-76 UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeoba... 285 8e-76 UniRef50_A6W2Y0 Two component transcriptional regulator, winged ... 285 9e-76 UniRef50_C5CFK4 Two component transcriptional regulator, winged ... 285 9e-76 UniRef50_B8IU63 Two component transcriptional regulator, winged ... 285 1e-75 UniRef50_A2SKN3 Two component transcriptional regulator, winged ... 285 1e-75 UniRef50_D1C5Q5 Two component transcriptional regulator, winged ... 284 1e-75 UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bact... 284 1e-75 UniRef50_C8W872 Two component transcriptional regulator, winged ... 284 2e-75 UniRef50_B0S0W9 Two-component response regulator n=9 Tax=Clostri... 284 2e-75 UniRef50_Q3Z755 DNA-binding response regulator n=2 Tax=Dehalococ... 283 2e-75 UniRef50_C1F2N1 DNA-binding response regulator n=1 Tax=Acidobact... 283 2e-75 UniRef50_B2V7Q1 Two component transcriptional regulator, winged ... 283 2e-75 UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicu... 283 2e-75 Sequences not found previously or not previously below threshold: UniRef50_O34903 Uncharacterized transcriptional regulatory prote... 302 7e-81 UniRef50_B2A1Z8 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_D2BG66 DNA-binding response regulator, two-component sy... 299 3e-80 UniRef50_A5FEG3 Two-component transcriptional regulator, winged ... 295 8e-79 UniRef50_C6VX71 Two component transcriptional regulator, winged ... 295 9e-79 UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6V... 294 1e-78 UniRef50_B1YK44 Two component transcriptional regulator, winged ... 294 1e-78 UniRef50_P94413 Uncharacterized transcriptional regulatory prote... 294 1e-78 UniRef50_A7GKH0 Two component transcriptional regulator, winged ... 294 2e-78 UniRef50_D1VF89 Two component transcriptional regulator, winged ... 293 3e-78 UniRef50_Q0ASG1 Two component transcriptional regulator, winged ... 293 4e-78 UniRef50_B3QW38 Two component transcriptional regulator, winged ... 292 7e-78 UniRef50_C6CZ95 Two component transcriptional regulator, winged ... 292 8e-78 UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B... 290 2e-77 UniRef50_C7ND40 Two component transcriptional regulator, winged ... 290 3e-77 UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional r... 289 4e-77 UniRef50_D2RAW2 Response regulator receiver domain protein n=3 T... 289 5e-77 UniRef50_Q83N47 Two-component system response regulator n=8 Tax=... 287 2e-76 UniRef50_Q99U73 Response regulator arlR n=10 Tax=Firmicutes RepI... 287 2e-76 UniRef50_B4U9M6 Two component transcriptional regulator, winged ... 287 2e-76 UniRef50_B4B5Q6 Response regulator receiver modulated diguanylat... 286 3e-76 UniRef50_A5FBX2 Two component transcriptional regulator, winged ... 286 4e-76 UniRef50_A9VV65 Two component transcriptional regulator, winged ... 285 7e-76 UniRef50_Q38YC7 Two-component system, response regulator (Possib... 285 9e-76 UniRef50_C6Q063 Two component transcriptional regulator, winged ... 284 1e-75 UniRef50_P35163 Transcriptional regulatory protein resD n=162 Ta... 283 2e-75 >UniRef50_P52076 Transcriptional regulatory protein qseB n=74 Tax=Proteobacteria RepID=QSEB_ECOLI Length = 219 Score = 337 bits (866), Expect = 2e-91, Method: Composition-based stats. Identities = 219/219 (100%), Positives = 219/219 (100%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN Sbjct: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK 219 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK 219 >UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC-wHTH domains) n=6 Tax=Bacteria RepID=B3DZZ9_METI4 Length = 268 Score = 327 bits (841), Expect = 1e-88, Method: Composition-based stats. Identities = 87/221 (39%), Positives = 137/221 (61%), Gaps = 4/221 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L++ED++ I I L + GF+VD ++G + + + PYDA +LD+ LPG DG Sbjct: 46 MRVLVVEDELKIARFISRALEEEGFTVDCCSRGDEALLMMLATPYDAAVLDIMLPGPDGI 105 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +LR RE+G P+L+L+AR +++EGL GADDYL KPF++ E+ ARL AL+RRT Sbjct: 106 SVLRSLRERGISLPILLLSARSETRDKIEGLNSGADDYLPKPFSMDELVARLRALIRRTA 165 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G + + GN+ L+ R + + L KEF++LELLMR GRV +R + E+++ Sbjct: 166 GIGLSVYKVGNLTLNLLTREVFRGQKKIELTAKEFSILELLMRTPGRVFTRTQVCERVWN 225 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYTLG 217 + + +N V+V++ LR+K+ I+TV G+GY + Sbjct: 226 YHFDPGTNLVDVYIQKLRKKIDEGEEQKLIQTVRGVGYKIE 266 >UniRef50_Q2JAC4 Two component transcriptional regulator, winged helix family n=90 Tax=cellular organisms RepID=Q2JAC4_FRASC Length = 283 Score = 326 bits (838), Expect = 3e-88, Method: Composition-based stats. Identities = 94/221 (42%), Positives = 133/221 (60%), Gaps = 4/221 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L++ED+ ++ GL + G++VD G YDA++LDL LPG+DG Sbjct: 30 MRVLVVEDEARTAALLRRGLVEEGYAVDVVGDGADAVWQATEIGYDAIVLDLMLPGLDGF 89 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++ R RE G+ PVL+LTAR + +R+ GL GADDYL KPF+ E+ ARL AL+RR Sbjct: 90 EVCRRLREAGRWAPVLMLTARGDVDDRIRGLDAGADDYLPKPFSFGELTARLRALVRRGA 149 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + LR G++ LDP + AG PL L KEFALL LLMR+ VL+R I + ++ Sbjct: 150 VERPTVLRIGDLRLDPAEHRVLRAGSPLDLSAKEFALLHLLMRHPDEVLTRTYIVDHVWD 209 Query: 181 WDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTLG 217 + + TSN V+ +V ++RRK+ G I TV G+GY L Sbjct: 210 FAFDGTSNIVDQYVRYVRRKIDIPDGPSLIETVRGVGYRLR 250 >UniRef50_B8DZ94 Two component transcriptional regulator, winged helix family n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8DZ94_DICTD Length = 224 Score = 326 bits (838), Expect = 3e-88, Method: Composition-based stats. Identities = 84/224 (37%), Positives = 132/224 (58%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSA--PYDAVILDLTLPGMD 58 M+IL+IED+ +G +K GL K G+ VD G + K + + YD VILD+ LP +D Sbjct: 1 MKILIIEDEKKLGTALKKGLEKEGYVVDLAFDGEEAKYIIENNFEGYDLVILDIMLPKID 60 Query: 59 GRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR 118 G + ++ R K + P+L+LTA+D + +++ GL GADDYL KPF+ E+ AR+ AL+RR Sbjct: 61 GISLCKDLRAKNFQAPILMLTAKDKVEDKILGLESGADDYLVKPFSYEELLARIRALLRR 120 Query: 119 TNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 L+ ++ LD + + L KEFA+LE LMRN R++S++ I + Sbjct: 121 PKNLMPTVLKVKDISLDTVSKRVFRGDIEILLTNKEFAILEYLMRNVNRIISKEQIISHV 180 Query: 179 YTWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTLGE 218 + ++ + SN VE H+ +LR+KL + I T+ G+GY + E Sbjct: 181 WGYESDTLSNVVEAHIKNLRKKLERKRDENIIETIRGMGYRIKE 224 >UniRef50_C8WRL2 Two component transcriptional regulator, winged helix family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRL2_ALIAD Length = 231 Score = 325 bits (835), Expect = 6e-88, Method: Composition-based stats. Identities = 98/221 (44%), Positives = 133/221 (60%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+ED++ + +K L + ++VD G G + + YD ILD+ LP M G Sbjct: 1 MRILLVEDEVRLASALKQLLKEHQYAVDVAHDGETGCDLALTDSYDLAILDIMLPKMSGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 DILR R+ G + PVL+LTA+D + +RV GL GADDYL KPF E+ AR+ AL RRT Sbjct: 61 DILRAMRKAGLQTPVLLLTAKDTVEDRVTGLDAGADDYLVKPFDNKELLARVRALSRRTG 120 Query: 121 GQA-SNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 A + + G LD R T GEPL L KEF LLEL MRN +VLS+++I ++++ Sbjct: 121 QIAGGDAIEAGPFRLDLNTRTVTRNGEPLALTAKEFQLLELFMRNPNKVLSKEVILDRVW 180 Query: 180 TWDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYTL 216 D +V NAVE +VH LR+K+ +I TV G+GY Sbjct: 181 GPDADVIGNAVENYVHFLRKKIDEPDLPSYITTVRGVGYMF 221 >UniRef50_C5CE19 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CE19_KOSOT Length = 228 Score = 325 bits (835), Expect = 6e-88, Method: Composition-based stats. Identities = 98/224 (43%), Positives = 139/224 (62%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL++ED+ + + IK L GF VD G +G + S YD +ILD+ LPGM G Sbjct: 1 MKILVVEDNKKLAENIKKYLELEGFIVDLAYDGNEGLDLALSYNYDCIILDIILPGMSGI 60 Query: 61 DILREWR-EKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 +I R R E+ + P+L+LTA ++ RVEGL +GADDY+ KPF L E+ AR+ AL+RR Sbjct: 61 EICRFLRDEEKSQVPILMLTALGSVENRVEGLNVGADDYMPKPFDLRELVARVRALIRRN 120 Query: 120 NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 L++G+++++ R + GEPL L KEF+LLEL MRN G V SR+ I +KL+ Sbjct: 121 QVVRQETLKYGDLVMNLQTREVSCKGEPLNLSSKEFSLLELFMRNPGVVFSREQILDKLW 180 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTLGEK 219 E SN V+V+V +LR+KL + I TVH IGY L ++ Sbjct: 181 ESGFEPRSNIVDVYVLYLRKKLKPFGYDEKIETVHNIGYRLKKE 224 >UniRef50_B5JD22 Response regulator receiver domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JD22_9BACT Length = 239 Score = 325 bits (834), Expect = 8e-88, Method: Composition-based stats. Identities = 91/223 (40%), Positives = 140/223 (62%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M++LL+ED+ I D + GL + G+ V+ G G S YD ++LD+ LPG DG Sbjct: 17 MKVLLVEDEKKISDFVVRGLKEQGYVVELAEDGEDGYIHATSQSYDVIVLDIMLPGRDGL 76 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 IL+ R+ G PV+++TAR L ER+EGL LGADDYL KPF L E+ AR++AL RR++ Sbjct: 77 SILKSLRKSGNTVPVILVTARGELDERLEGLNLGADDYLTKPFYLDELIARIQALHRRSS 136 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G++ + ++ G+++++ R GE + L +EF LLE LMR+ GRVL+R I E ++ Sbjct: 137 GKSLSMMQVGDLVVNLSTREVRRDGELVELTTREFNLLEYLMRSPGRVLTRTQILEHVWG 196 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYTLGEK 219 +D + ++N V+V V LR+K+ + I TV G GY + ++ Sbjct: 197 YDFDPSTNVVDVCVQRLRKKVDAGHDVHLIETVRGAGYRMRKE 239 >UniRef50_P66796 Transcriptional regulatory protein qseB n=58 Tax=Gammaproteobacteria RepID=QSEB_SALTI Length = 219 Score = 325 bits (834), Expect = 9e-88, Method: Composition-based stats. Identities = 191/218 (87%), Positives = 206/218 (94%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD LIGDGIK GLSKMGFSVDWFT+GR GKEALYSAPYDAVILDLTLPGMDGR Sbjct: 1 MRILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 DILREWREKG++EPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEAL+RR + Sbjct: 61 DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 GQAS+ELRHG V L+PG +ATLAGEPL LKPKEFALLELL+RN GRVL RKLIEEKLY Sbjct: 121 GQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE 218 WD++V+SNAVEVHVHHLRRKLGS+FIRTVHGIGYTLG+ Sbjct: 181 WDDDVSSNAVEVHVHHLRRKLGSEFIRTVHGIGYTLGD 218 >UniRef50_Q2IUG0 Two component transcriptional regulator, winged helix family n=207 Tax=Bacteria RepID=Q2IUG0_RHOP2 Length = 257 Score = 321 bits (824), Expect = 1e-86, Method: Composition-based stats. Identities = 96/215 (44%), Positives = 133/215 (61%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 R+L++EDD + + T L+ G+ VD G +G + PYDAV+LD+ LP MDG Sbjct: 30 RLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGIS 89 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 +L WR + PVLILTARD +++V+G GADDY+ KPF L EV AR+ AL+RR+ G Sbjct: 90 VLEAWRRNARAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSAG 149 Query: 122 QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTW 181 A +EL G V+LD ++ G P+ L E+ LL LM ++GRV+SR + E LY Sbjct: 150 HAQSELTCGPVVLDTRTGRVSVRGHPVKLTSHEYRLLAYLMHHSGRVVSRTELVEHLYDQ 209 Query: 182 DEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTL 216 D + SN +EV V +R+KL D I+TV G+GY L Sbjct: 210 DFDRDSNTIEVFVGRIRKKLDVDIIQTVRGLGYLL 244 >UniRef50_A4SHT1 Two-component system response regulator n=10 Tax=Proteobacteria RepID=A4SHT1_AERS4 Length = 218 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 95/218 (43%), Positives = 130/218 (59%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL++ED+ + + L GF D G + + PYDA+ILDL LPG DG Sbjct: 1 MRILIVEDEKTLAGQLAEQLRLSGFVTDLCHDGNEAGFLGETEPYDAIILDLGLPGRDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L+EWR KG PVL+LTAR L E++EGL GADDYL KPF + E+ AR++AL+RR Sbjct: 61 SVLKEWRSKGIDTPVLVLTARGQLHEKIEGLNAGADDYLTKPFQVAELVARVQALVRRAA 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G AS+ L G V LD G P+ L EF +L LM++ G+V+SR + + +Y Sbjct: 121 GNASSILEIGGVRLDMAASQVWYEGTPIKLTAHEFRVLGYLMQHRGKVVSRSELIDHIYA 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE 218 D + SN VEV + +R+K +D I TV G+GY + E Sbjct: 181 QDFDRDSNTVEVFIGRIRKKTHADLIETVRGLGYRINE 218 >UniRef50_B2J1E6 Multi-component transcriptional regulator, winged helix family n=2 Tax=Nostoc punctiforme PCC 73102 RepID=B2J1E6_NOSP7 Length = 787 Score = 320 bits (822), Expect = 2e-86, Method: Composition-based stats. Identities = 86/223 (38%), Positives = 128/223 (57%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILLIEDD ++ + L++ ++V+ G+ G E + YD ++ D+ LP +DG Sbjct: 1 MRILLIEDDEVLASVLLQSLTQQHYAVEIAEDGQIGWEYAQATNYDLILTDVVLPKLDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + + R G P+L++TA+D ++R+ GL GADDYL KP L E+ AR+ AL+RR + Sbjct: 61 TLCQRLRSNGCSTPILLITAKDETSDRIRGLDAGADDYLIKPLNLRELQARVRALLRRGD 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 L G + LDP T + L L PKE++LLE+L+RN RV SR I E L+T Sbjct: 121 TPRPPVLEVGALRLDPSICEVTYDNQVLDLTPKEYSLLEILLRNPLRVFSRGDIIEHLWT 180 Query: 181 WDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTLGEK 219 +D+ V+ H+ LR KL D+I V+G+GY L + Sbjct: 181 FDDPPQEETVKSHIKGLRHKLKVVGAVDWIENVYGLGYRLKSQ 223 Score = 100 bits (250), Expect = 4e-20, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 2/120 (1%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 +L+++DD LI + L G + + E L S D +ILD+ +P + G ++ Sbjct: 502 VLVVDDDPLILAALGPMLEPWGMRITGLDDPLRFWEVLQSTAPDLLILDVEMPHISGIEL 561 Query: 63 LREWRE--KGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + R + Q P++ LTA + + G DDY+ KP E+ AR+ + R+ Sbjct: 562 CQAVRTDPQWQELPIVFLTAHREMETVQQVFAAGGDDYVVKPVVGAELLARITHRLERSR 621 >UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax=Cyanobacteria RepID=B1WRX4_CYAA5 Length = 225 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 80/220 (36%), Positives = 128/220 (58%), Gaps = 4/220 (1%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 IL++ED++ + I+ L G++V G G + D ++LD LPG+ G DI Sbjct: 6 ILVVEDEVKLAQFIELELKYEGYTVTVVNDGLSGLTTARESNPDLILLDWMLPGISGLDI 65 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQ 122 + R+ G + P+++LTA+D +++RV GL GADDY+ KPF L E+ AR+ A +RR + + Sbjct: 66 CKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNHEE 125 Query: 123 ASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTWD 182 + L+ ++ L+ R + L KEF LLE LM + +VLSR I E+++ +D Sbjct: 126 DPDLLQFLDLSLNRNTREVFRGSRLIELTAKEFDLLEYLMSHPKQVLSRDQILERVWGYD 185 Query: 183 EEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYTLGE 218 SN +EV+V +LR KL ++ I+TV G+GY L + Sbjct: 186 FMGDSNIIEVYVRYLRLKLEAEQEKRLIQTVRGVGYVLRD 225 >UniRef50_B7K7W8 Multi-component transcriptional regulator, winged helix family n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7K7W8_CYAP7 Length = 799 Score = 319 bits (820), Expect = 4e-86, Method: Composition-based stats. Identities = 84/224 (37%), Positives = 130/224 (58%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M++LL+EDD + + IK L + V+ T G+ G E YD ++LDL LP +DG Sbjct: 1 MKLLLVEDDQNLAEVIKEALKSQHYLVELATDGQTGLELAEMFEYDLIMLDLMLPKLDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++ R+KG P+L++T +D + +V+ L GADDYL KPF + E+ AR+ AL+RR Sbjct: 61 QFCQQRRKKGDLTPILLVTGQDDASCKVKALDAGADDYLVKPFNIQELLARVRALLRRGG 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 ++ L+ G + L+P T GE + L KE+ +LEL +RN R+ S+ + E L++ Sbjct: 121 LSSTPLLQWGPLNLNPSSCQVTYEGELIHLTAKEYGILELFLRNRNRIFSQSALIEHLWS 180 Query: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGEK 219 +DE T NAV + LR+KL + I TV+G+GY L + Sbjct: 181 FDEAPTENAVRTQIKSLRQKLKKAGASPNLIETVYGLGYRLNKN 224 Score = 98.7 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 2/113 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +I++++DD + I+ L GFS+ + + L D +ILD+ +P + G + Sbjct: 499 KIMIVDDDPNLLKLIQFHLEPWGFSITLLEDPKLFWDILERTTPDLLILDVEMPEISGIE 558 Query: 62 ILREWRE--KGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARL 112 + + R P+L L+ EG + GADDY+ KP E+ R+ Sbjct: 559 LCQVVRNDPHWHHLPILFLSGHRESKFVSEGFQAGADDYIYKPIVDSELVTRI 611 Score = 50.9 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 2/103 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDG-- 59 +L++++D ++ I G T Q KEA+ + D ++LD+ P + Sbjct: 374 HLLIVDNDFILVQSIVNQAKLWGLIPQVATDIAQAKEAIARSRPDVILLDMGFPDREEIC 433 Query: 60 RDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKP 102 ++L++ R+ P +I + ++ + RV+ RLGA +L KP Sbjct: 434 LELLKDIRQLIPPIPTVITSDQNNFSVRVKVARLGAVGFLQKP 476 >UniRef50_B1ZVS5 Two component transcriptional regulator, winged helix family n=3 Tax=Chlamydiae/Verrucomicrobia group RepID=B1ZVS5_OPITP Length = 228 Score = 318 bits (818), Expect = 6e-86, Method: Composition-based stats. Identities = 87/220 (39%), Positives = 136/220 (61%), Gaps = 3/220 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L++EDD I + GL + G++VD G G S YDA ++D+ LP +DG Sbjct: 6 MRVLVVEDDAKISSFVVKGLKQEGYAVDHAPDGDTGLALATSTAYDAAVVDIMLPELDGL 65 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++R R + PVL L+AR ++ +RV+GL+ G DDYL KPFA E++ARL+AL+RR + Sbjct: 66 SLVRRLRAERSAMPVLFLSARASVEDRVKGLQAGGDDYLTKPFAFAELSARLQALIRRAS 125 Query: 121 GQA-SNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 + L G+V LD R T+ G+P+ L+P+EF+LLE L+R+AGR +++ +I E ++ Sbjct: 126 RSPEATRLSAGDVTLDLVSRTVTVGGQPVELQPREFSLLEYLLRHAGRPVTKVMILEHVW 185 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGSD--FIRTVHGIGYTLG 217 + + +N V+V + LR K+ D I T+ G+GY Sbjct: 186 DYSFDPQTNVVDVLMSRLRSKIDPDKTRIETLRGVGYVFK 225 >UniRef50_A4VI02 DNA-binding response regulator n=12 Tax=Proteobacteria RepID=A4VI02_PSEU5 Length = 234 Score = 318 bits (818), Expect = 6e-86, Method: Composition-based stats. Identities = 103/218 (47%), Positives = 143/218 (65%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD +G+GI+T L G++VDW G AL ++ VILDL LP +DG Sbjct: 16 MRILLVEDDRALGEGIRTALKPEGYTVDWLQDGASALHALNHESFELVILDLGLPRLDGL 75 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++L+ R G PVL+LTARDA ++R+ GL GADDYL KPF + E+ ARL AL+RR+ Sbjct: 76 ELLKRLRAAGNPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVAELKARLRALLRRSF 135 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + L + ++LDP + + G P+ L KEF LL L+ GRVL+R +++ LY Sbjct: 136 NRPEPVLEYRGILLDPVNQQVSYQGTPINLPRKEFVLLHELLAQPGRVLTRDRLQQVLYG 195 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE 218 WDE+V SNA+EVH+HHLR+K + IRTV G+GY + + Sbjct: 196 WDEDVESNALEVHIHHLRKKFFPELIRTVRGVGYLVDK 233 >UniRef50_UPI0001C16F99 Multi-component Transcriptional regulator, Winged helix family n=2 Tax=Nostocaceae RepID=UPI0001C16F99 Length = 1329 Score = 318 bits (818), Expect = 7e-86, Method: Composition-based stats. Identities = 84/224 (37%), Positives = 131/224 (58%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL++EDD LI + L+ ++V+ G+ + + + YD ++LD+ LP +DG Sbjct: 1 MKILVVEDDALIACTLSNFLTYQNYAVEVANDGKTAWDLVETYEYDLILLDIVLPKLDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + ++ R G+R P+L+LT RD+ ++ GL GADDY+ KP E+ AR+ AL+RR Sbjct: 61 SLCKKIRSSGRRVPILLLTGRDSSHDKAIGLDAGADDYVVKPCDEEELVARVRALLRRGG 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + L G + LDP T + L+L PKE+ALLELLMRN RV S +I + L++ Sbjct: 121 VTSQPVLEWGGLRLDPSSCEVTYQQDQLSLTPKEYALLELLMRNNRRVFSCGMILDHLWS 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGS-----DFIRTVHGIGYTLGEK 219 +++ +AV H+ LR KL + D + TV+GIGY L + Sbjct: 181 YEDTPGEDAVRTHIKGLRMKLKAAGAPHDLVETVYGIGYRLKPQ 224 Score = 93.7 bits (233), Expect = 4e-18, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 6/116 (5%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 ++IL+++DD+ + ++ L+ G + Q D +ILD+ +PGM G Sbjct: 382 IKILVVDDDLKTLELLQVLLTPWGLEIVTLNYPEQFWSTWEKIHPDMLILDIEMPGMSGI 441 Query: 61 DILREWRE--KGQREPVLILTARD--ALAERVEGLRLGADDYLCKPFALIEVAARL 112 ++ + R +G+ P+L LT + +V +GADD++ KP + E+ R+ Sbjct: 442 ELCKMIRSHDQGREVPILFLTVHSNAEIVNQV--FSVGADDFVSKPIIISELVNRI 495 Score = 66.7 bits (163), Expect = 5e-10, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 2/77 (2%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 +L+ +DD + +K L + G+ V G Q D ++LDL +PGM+G + Sbjct: 1076 VLVCDDDPITRQELKNLLLQGGYRVLTVDSGDQAIAQAVIQHPDVILLDLVMPGMNGWET 1135 Query: 63 LREWREKGQ--REPVLI 77 + ++ P++I Sbjct: 1136 MAGLKKCSDTKDIPIVI 1152 Score = 42.0 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 3/87 (3%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +IL+IEDD + D + T + GR+ D +ILDL LP DG Sbjct: 1205 KILIIEDDHDLADLLATLFDRHDIETFIAKTGREAIHLSQKVNPDLLILDLILPEADGFT 1264 Query: 62 ILREWREKGQ--REPVLILTARDALAE 86 ++ ++ Q PV++ +A+D L + Sbjct: 1265 VVDWLKQHDQLFSIPVVVYSAKD-LDD 1290 >UniRef50_A7ZEI3 Transcriptional activator protein CopR n=9 Tax=Bacteria RepID=A7ZEI3_CAMC1 Length = 219 Score = 318 bits (817), Expect = 7e-86, Method: Composition-based stats. Identities = 85/219 (38%), Positives = 133/219 (60%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL++ED++ + I L K G+SVD G + + A YD ++LDL +P MDG Sbjct: 1 MKILVVEDEIDLNSVITRHLKKNGYSVDSACNGEEAMDFTAVAHYDLIVLDLMMPVMDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 L+ R PVLILTA+D + + V+GL GADDYL KPF E+ AR+ L+RR + Sbjct: 61 TFLQRSRAAKLVTPVLILTAKDDVDDVVKGLDAGADDYLVKPFDFKELLARVRTLIRRNS 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G ++E+ G + +D K+ +GE + L KE+ +LE LM N GR+L+R I+E ++ Sbjct: 121 GNVASEICAGELKIDLSKKSVEFSGEQIELTGKEYEILEFLMLNKGRILTRDQIKEHVWD 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGS-DFIRTVHGIGYTLGE 218 +D SN ++V + ++R+KLG + I+T G+GY + + Sbjct: 181 FDYTGGSNVIDVLIKNIRKKLGECEAIQTKRGLGYVVKD 219 >UniRef50_C7NAQ8 Two component transcriptional regulator, winged helix family n=10 Tax=Bacteria RepID=C7NAQ8_LEPBD Length = 227 Score = 318 bits (817), Expect = 9e-86, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 133/221 (60%), Gaps = 4/221 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L++ED+ + I L K + VD G + + YDA+ILD+ LP +DG Sbjct: 1 MRLLVVEDEKKLNGLITKKLEKEYYGVDSCFDGEEAIRYVEGTEYDAIILDIMLPKLDGF 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++++ R K + P+L+LTARD + ++V+GL GADDYL KPF E+ AR+ L+RR + Sbjct: 61 EVIKRIRAKKNKVPILLLTARDNIDDKVKGLDYGADDYLVKPFIFEELMARIRVLLRRNS 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G A N + N+ +D + G + L +E+++LE L+RN G++L R+ IE+ ++ Sbjct: 121 GNADNVITVANLKVDLDAKTVFRDGVLIKLSGREYSILEYLIRNKGKILPRERIEDHIWN 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTLG 217 ++ E +N ++V++ +LR+K+ + I T+ G+GY L Sbjct: 181 YEYEGGTNVIDVYIRYLRKKIDDSYTPKLIHTIRGLGYVLR 221 >UniRef50_B2IXN9 Multi-component transcriptional regulator, winged helix family n=4 Tax=Nostocaceae RepID=B2IXN9_NOSP7 Length = 624 Score = 317 bits (815), Expect = 1e-85, Method: Composition-based stats. Identities = 89/223 (39%), Positives = 134/223 (60%), Gaps = 6/223 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD L+ + T L+K + VD G G E + YD ++LD+ LP +DG Sbjct: 1 MRILLVEDDDLLAQAVATALTKQNYVVDIAADGEAGWELVNVCNYDLILLDVILPKLDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + R+ R++G + +L+LTA+D ++V GL GADDY+ KPF E++AR+ AL+RR N Sbjct: 61 SLCRQLRQEGYQMLILLLTAKDTKTDKVIGLDAGADDYVVKPFDFQELSARIRALLRRGN 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 L G+++LDP T A L L KEF+LL+L +RN R+ SR I ++L++ Sbjct: 121 TALPPVLEWGSLLLDPSTCEVTYADIALNLTAKEFSLLDLFLRNNQRIFSRATIVDQLWS 180 Query: 181 WD-EEVTSNAVEVHVHHLRRKLGS-----DFIRTVHGIGYTLG 217 + + N ++ H+ LR+KL + DFI TV+G+GY L Sbjct: 181 AEKDPPEENTIKSHIKSLRQKLKTAGANYDFIETVYGMGYRLK 223 Score = 74.8 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 10/117 (8%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RI+++EDD I I+ L +G ++ + L D +ILD +P ++G + Sbjct: 499 RIMVVEDDPQILTVIQQSLETLGITLKTLEDSCYFWDTLTEFSPDLLILDAEMPYINGIE 558 Query: 62 ILREWREKGQR--EPVLI----LTARDALAERVEGLRLGADDYLCKPFALIEVAARL 112 + + R PV+ L+A + E++ +GADD + KP + A + Sbjct: 559 LCQVVRNDPCWKLLPVVFVVDNLSA--DIVEQI--FAIGADDCVSKPIVSSTLIACI 611 Score = 39.7 bits (93), Expect = 0.062, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 17/107 (15%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 +L+I +D + +G+ G V T + + S D V+LDL + D + Sbjct: 355 LLVISNDRQVVEGLVNEAENQGLQVKIATNLTAARSIIPSLNPDVVLLDLDI-EEDSLKL 413 Query: 63 LREWREKG----------------QREPVLILTARDALAERVEGLRL 93 L E ++ + PVL+ T R+ ++ GLRL Sbjct: 414 LIELSQRSATLGGTPSPTVGETPTPQIPVLVFTERNNFSDACGGLRL 460 >UniRef50_D2QKB6 Two component transcriptional regulator, winged helix family n=11 Tax=Bacteroidetes RepID=D2QKB6_9SPHI Length = 230 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 86/224 (38%), Positives = 137/224 (61%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL++ED+ + +K GL + VD G+ G+ + YD ++LD+ LP M+G Sbjct: 6 MKILVVEDEPKLASFVKKGLEEQSCEVDVAYDGQVGRNMALNNLYDVIVLDINLPKMNGF 65 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 D+++ R++ R PVL+LTA ++ +++ G GADDYL KPF E+ ARL AL +R++ Sbjct: 66 DVVQSIRQEKNRTPVLMLTAMGSVDDKLTGFEAGADDYLVKPFEFRELMARLRALTKRSS 125 Query: 121 --GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 G +N L+ ++ LD +++A + + L KEF LL+ LMRN GRV+SR I EK+ Sbjct: 126 DAGMQTNVLKVADLELDLNEKVARRGDKRIELTAKEFGLLDYLMRNRGRVVSRVDIAEKV 185 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTLGE 218 + + +N ++V+V+ LR+K+ DF I TV G+GY L E Sbjct: 186 WDIHFDTGTNVIDVYVNFLRKKIDKDFPTKLIHTVIGMGYMLKE 229 >UniRef50_A6WIX6 Two component transcriptional regulator, winged helix family n=3 Tax=Bacteria RepID=A6WIX6_SHEB8 Length = 227 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 88/225 (39%), Positives = 133/225 (59%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M +LL+ED+ I D I GL F+V G QG +A + +D +ILD+ LPG DG Sbjct: 1 MNVLLVEDEQKIADFICEGLRAKHFNVTHCADGNQGYQAASNNTHDVIILDIMLPGRDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 DILR R++G P+++LTAR+ L +RV+GL +GADDYL KPF + E+ AR++AL+RR Sbjct: 61 DILRSLRQQGVDTPIILLTARNELGDRVQGLDMGADDYLAKPFYVEELHARIQALLRRHG 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G + + G + LD R G+ + L +EF+LLE LMR+ +VL+R + E ++ Sbjct: 121 GTQQHVVEVGALQLDCINRSINCQGQSVELTSREFSLLEHLMRSPNQVLTRGQLLEHVWG 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGS--------DFIRTVHGIGYTLG 217 +D + +N V+V + +R K+ S I ++ G GY L Sbjct: 181 YDFDPCTNVVDVCIKRIRSKMASLEKAGKMVGAIESIRGTGYRLS 225 >UniRef50_B5VWD3 Multi-component transcriptional regulator, winged helix family n=2 Tax=Arthrospira RepID=B5VWD3_SPIMA Length = 628 Score = 317 bits (813), Expect = 3e-85, Method: Composition-based stats. Identities = 91/224 (40%), Positives = 140/224 (62%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD+ + D + L+ + VD G+QG E + S+ YD V+LD+ LP +DG Sbjct: 1 MRILLVEDDLHLADALVAMLTSQKYQVDLVNDGQQGWEYIQSSSYDLVLLDIELPLLDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + + R + P+L+LTAR+ ++V+GL GADDY+ KP + E++AR+ AL+RR++ Sbjct: 61 SLCHQLRSHNFQVPILLLTARNNQQDKVKGLDAGADDYMVKPLDIAELSARIRALLRRSS 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 S+ L + ++LD + G+PL L PKE+ LLELLM N R S I +KL+T Sbjct: 121 EATSSVLTYEKMVLDTSTCDVSYNGKPLKLTPKEYGLLELLMGNRQRTFSIDKILDKLWT 180 Query: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGEK 219 +D+ ++N V H+ LR+KL G++FI TV+G+GY L + Sbjct: 181 FDDPPSANTVRAHIKGLRQKLKAAGAGAEFIETVYGLGYRLNQN 224 Score = 109 bits (274), Expect = 7e-23, Method: Composition-based stats. Identities = 37/127 (29%), Positives = 66/127 (51%), Gaps = 2/127 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 R+++++DD + I+ L G RQ + L S+ D ++LD+ +P ++G + Sbjct: 497 RVMIVDDDPQMLAAIQGLLQPWGIQTITLDDPRQFWKTLESSHPDLLVLDIEMPHLNGIE 556 Query: 62 ILREWRE--KGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 + + R + + PVL +TA+ R + + GADDYL KPF E+A R+ ++RT Sbjct: 557 LCQIVRNDPRWRGLPVLFVTAQTDRQIREQVFQAGADDYLTKPFTGSELATRIVNRLKRT 616 Query: 120 NGQASNE 126 A+ Sbjct: 617 QNLATRT 623 >UniRef50_B8HL49 Multi-component transcriptional regulator, winged helix family n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HL49_CYAP4 Length = 652 Score = 316 bits (811), Expect = 4e-85, Method: Composition-based stats. Identities = 90/221 (40%), Positives = 133/221 (60%), Gaps = 4/221 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+ILLIEDD ++ D + + L + VD GR+G + YD +++D+ LP DG Sbjct: 1 MKILLIEDDPVLTDVLVSTLRVQRYIVDAVADGRRGWDYAQDTSYDLILMDVGLPQQDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + R R +G + P+L++TA+DA +R+ GL GADDYL KP L E+ AR+ AL+RR + Sbjct: 61 TLCRRLRAQGSQVPILLITAQDAKVDRIAGLDAGADDYLTKPLDLAELQARVRALLRRGS 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + L+ GN+ LDP T A L L PKE+ LLEL +R+ G+V SR + E L+T Sbjct: 121 ETKTPILQVGNLQLDPRSCQVTYAERSLNLTPKEYNLLELFLRHPGQVFSRGQLVEHLWT 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTLG 217 +D+ +V+ HV LR+KL + D+I ++GIGY L Sbjct: 181 FDDPPLEESVKAHVKGLRQKLKAAGAVDWIENIYGIGYRLN 221 Score = 91.0 bits (226), Expect = 2e-17, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 2/120 (1%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 +LL++DD + + I L G + + L S D +ILD+ +P G ++ Sbjct: 382 VLLVDDDPIFLEQIVLLLQPWGIHLTGINNPLELWSVLPSTRPDLLILDVEMPQTSGIEL 441 Query: 63 LREWRE--KGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + R + Q P++ LTA + +GADD++ KP + E+ R+ + RT Sbjct: 442 CQSLRSDPEWQSLPIIFLTAHRDRETIQQVFTVGADDFVTKPVVVPELLTRIINRLERTR 501 >UniRef50_A0RG02 Two-component response regulator n=92 Tax=Bacteria RepID=A0RG02_BACAH Length = 236 Score = 316 bits (811), Expect = 4e-85, Method: Composition-based stats. Identities = 87/221 (39%), Positives = 134/221 (60%), Gaps = 4/221 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L++ED+ + + + L+ +SVD G + + A YD ++LD+ +PG++G Sbjct: 13 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 72 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L++ R PVL+LTA+D + +RV+GL LGADDYL KPFA E+ AR+ LMRR Sbjct: 73 QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 132 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G SN ++++D T + +TL KEFA+LE ++RN VL+R IE+ ++ Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTLG 217 +D E SN ++V+V +LR+K+ S F I TV G GY L Sbjct: 193 YDYEGGSNIIDVYVRYLRKKVDSQFETKLIHTVRGTGYVLR 233 >UniRef50_Q2SPE2 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=18 Tax=Proteobacteria RepID=Q2SPE2_HAHCH Length = 226 Score = 315 bits (810), Expect = 5e-85, Method: Composition-based stats. Identities = 85/224 (37%), Positives = 132/224 (58%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L+IEDD + + GL + G+ VD G+ G + YD +++D LP +DG Sbjct: 1 MRVLVIEDDKDVAAYLSKGLKESGYVVDATDNGKTGLHMATTESYDLLLVDRMLPELDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++R R G + PVL+L+A + +RV+GLR G DDYL KPF+ E+ AR+EAL+RR+ Sbjct: 61 SVVRMLRAGGSKTPVLVLSALGEVDDRVQGLRAGGDDYLVKPFSFSELLARIEALLRRSQ 120 Query: 121 GQAS--NELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 Q L+ ++ +D R G + L+P+EF LLE MRN G+VL+R ++ EK+ Sbjct: 121 QQQDVVTTLKVADLEMDLLARTVKRNGLSIDLQPREFRLLEYFMRNPGQVLTRTMLLEKV 180 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTLGE 218 + + + +N ++VH+ LR K+ DF + T+ G GY L E Sbjct: 181 WDYHFDPQTNVIDVHISRLRAKIDKDFETPLLHTIRGAGYVLRE 224 >UniRef50_B7K2S9 Two component transcriptional regulator, winged helix family n=2 Tax=Cyanothece RepID=B7K2S9_CYAP8 Length = 635 Score = 315 bits (810), Expect = 5e-85, Method: Composition-based stats. Identities = 86/223 (38%), Positives = 128/223 (57%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+ILLIEDD I L++ ++VD G G E PYD ++LD+ LP +DG Sbjct: 1 MKILLIEDDASTSLAISQTLTQKKYAVDAVNNGETGLELAQLFPYDVILLDIMLPQLDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + R R + P+L+LTA++ + V GL GADDYL KPF E+ AR++AL RR Sbjct: 61 TVCRRLRSQQNHTPILLLTAKNHPRDCVMGLEAGADDYLVKPFDWAELLARIQALSRRGQ 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + LR N++L+ T G+ L L P E++LLEL +R+ RV SR++I ++++T Sbjct: 121 QVLPDVLRWENLVLNQKTHEVTYQGQLLHLTPTEYSLLELFLRHPQRVFSRQVIIDQIWT 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGS-----DFIRTVHGIGYTLGE 218 D+ + H+ LR+KL + + I+TV+G GY LGE Sbjct: 181 LDKVPGEETISSHIKALRQKLKAVGMTQNMIKTVYGFGYRLGE 223 Score = 84.0 bits (208), Expect = 3e-15, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 2/109 (1%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 ++LI+DD + +K L+ GF+V + +Q L + D +ILDL +P G ++ Sbjct: 510 LMLIDDDPNFLEVLKATLTPWGFNVVSLSNPQQFWPVLEATNPDLLILDLEMPHFSGLNL 569 Query: 63 LREWRE--KGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVA 109 + R+ + P+L L+ D + L GAD YL K A+ E+ Sbjct: 570 CQAVRKDDRFCSVPILFLSGHDDGESIRQMLVHGADCYLPKTIAVEELI 618 >UniRef50_B9KBQ0 Response regulator n=6 Tax=Thermotogaceae RepID=B9KBQ0_THENN Length = 233 Score = 315 bits (810), Expect = 5e-85, Method: Composition-based stats. Identities = 90/223 (40%), Positives = 137/223 (61%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LL+ED+ + D I L K F+VD G +G + +D VILD+ LP DG Sbjct: 11 MRVLLVEDEKDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEDFDVVILDVLLPVHDGW 70 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +IL+ REKG PVL+LTA + RV+GL +GADDYL KPF L E+ AR++AL+RR Sbjct: 71 EILKAMREKGINTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVKALIRRKA 130 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + +L G+++LD R G+ + L KE+ +LE LM N RV++++ ++E L++ Sbjct: 131 ENKNVKLVCGDLILDTATRKVFRGGKEIDLTKKEYQILEYLMMNKNRVVTKEELQEHLWS 190 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTLGEK 219 +D+ V S+ + H+ +LR+K+ F I TV GIGY + ++ Sbjct: 191 FDDTVFSDTLRSHIKNLRKKIDRGFKKKIIHTVRGIGYVVRDE 233 >UniRef50_C5NUZ8 Response regulator ArlR n=4 Tax=Bacteria RepID=C5NUZ8_9BACL Length = 223 Score = 315 bits (808), Expect = 8e-85, Method: Composition-based stats. Identities = 80/223 (35%), Positives = 130/223 (58%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL++ED+ + I L + +SVD G + + + + YD +I D+ +P +DG Sbjct: 1 MKILVVEDERDLNRIITKHLKRNNYSVDSCFDGEEALDFVGYSDYDLIITDIMMPNVDGY 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + ++ RE PV++LTA+D L +++ GL GADDY+ KPF E+ AR+ LMRR Sbjct: 61 EFIKRLRESKNNTPVIMLTAKDTLEDKIVGLDSGADDYIVKPFEFDELFARIRVLMRRNY 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G A+N ++ +++LD K+ T GE + L KE+ +LE LM+N +LSR I ++ Sbjct: 121 GLATNVIQIDDIVLDISKKQVTRNGENIGLTGKEYEVLEYLMKNKESILSRDQILNHVWD 180 Query: 181 WDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTLGEK 219 +D + SN V+V + ++R+KL I T G+GY + EK Sbjct: 181 YDYDGASNIVDVIIKNIRKKLDNGTDKTIIYTKRGLGYFVKEK 223 >UniRef50_B2JBG7 Two component transcriptional regulator, winged helix family n=3 Tax=Cyanobacteria RepID=B2JBG7_NOSP7 Length = 228 Score = 314 bits (806), Expect = 1e-84, Method: Composition-based stats. Identities = 90/224 (40%), Positives = 125/224 (55%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL+IEDD I + L VD G +G E + YD ++LDL LP +DG Sbjct: 1 MRILIIEDDERIAKPLAEDLKHQHHVVDIACDGIEGWEYAQAGNYDLILLDLMLPRLDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + + R +L+LTARD ++ GL GADDYL KPF L E+AAR+ AL RR+ Sbjct: 61 TLCKRLRASNYNAFILMLTARDTTPNKIIGLDAGADDYLVKPFDLEELAARIRALSRRSQ 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 L HG++ LDP T +PL+L KE+ +LE ++N +VL+R I +KL+ Sbjct: 121 ETRQLILMHGDLQLDPRNCHVTYGNKPLSLTHKEYMILECFLKNPTQVLTRSAILDKLWE 180 Query: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGEK 219 +D+ V+ H+ +LR+KL DFI TV+GIGY L K Sbjct: 181 FDKLSGEETVKTHITNLRKKLRAVGSSEDFIETVYGIGYRLCPK 224 >UniRef50_Q3SMF6 Two component Transcriptional regulator, Winged helix family n=9 Tax=Proteobacteria RepID=Q3SMF6_THIDA Length = 220 Score = 313 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 121/215 (56%), Positives = 159/215 (73%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD L+GDG+K GLS+ GF+VDW G AL + + AV+LDL LP DG Sbjct: 1 MRILLVEDDALLGDGLKAGLSQSGFAVDWLRDGEAAVTALTTERFAAVVLDLGLPRRDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L+ R +G PVL+LTARD L ++V GL LGADDY+ KPF L EVAARL ALMRR + Sbjct: 61 SVLQWLRGRGDPTPVLVLTARDQLEDKVRGLDLGADDYVLKPFDLDEVAARLRALMRRAH 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G+++ L+ G++ LDP R T G+P+ L +EF LL +L++++G VL+R+++EE+LYT Sbjct: 121 GKSAPLLKLGDIELDPAARSVTQRGQPVDLTGREFDLLHVLLQSSGHVLTRRMLEEQLYT 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYT 215 WDE V SNA+EVHVHHLRRKLG+D IRTV G+GY Sbjct: 181 WDEGVGSNALEVHVHHLRRKLGNDVIRTVRGVGYM 215 >UniRef50_B4WPA6 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WPA6_9SYNE Length = 685 Score = 313 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 95/223 (42%), Positives = 134/223 (60%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILLIEDD ++ + L + ++VD GR G E SA YD +++D+ LP +DG Sbjct: 1 MRILLIEDDEVLTSALVESLQQQRYTVDTADDGRFGLEYAESASYDLLLVDVGLPRLDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + RE R++ P+L++TA+DA E++ GL GADDYL KP + E+ ARL AL+RR Sbjct: 61 SLCRELRDRNYTTPILLMTAKDAADEKIRGLDAGADDYLTKPLDINELHARLRALLRRGE 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 ++ L G + LDP T A PL L PKE++LLEL +RN RV SR I E L+T Sbjct: 121 VSPTSILEMGQLHLDPVSCEVTYADAPLKLTPKEYSLLELFLRNPSRVFSRSHIIEHLWT 180 Query: 181 WDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTLGEK 219 +D+ ++V+ HV LRR+L +I V+G+GY L K Sbjct: 181 FDDPPLEDSVKAHVKGLRRRLKQAGADGWIENVYGMGYKLSPK 223 Score = 85.2 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 14/136 (10%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 +L ++DD ++ + L GFS+ + + L D +ILD+ +PG DG ++ Sbjct: 403 LLAVDDDPILLGTLSPLLEPWGFSITTLADSTKFWQTLTKVDPDLLILDIEMPGPDGIEL 462 Query: 63 LREWRE------KGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARL---- 112 R Q P+L LTAR+ A V DDY+ KP E+ R+ Sbjct: 463 CHAVRNDPRDGGHWQSLPILFLTARENAAAEVFAAGA--DDYVVKPIVGPELITRINNRL 520 Query: 113 -EA-LMRRTNGQASNE 126 A L++R + + + Sbjct: 521 ERARLLKRLSSRDAQT 536 >UniRef50_D1BPS5 Two component transcriptional regulator, winged helix family n=3 Tax=Veillonella RepID=D1BPS5_VEIPT Length = 224 Score = 313 bits (804), Expect = 2e-84, Method: Composition-based stats. Identities = 83/223 (37%), Positives = 131/223 (58%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+ILL+ED+ ++ L +VD G+Q + + ++ YD +++D+ +P +DG Sbjct: 1 MKILLVEDEEMLNGITAKYLRAENMTVDTCFNGQQAIDYVNTSSYDVIVMDIMMPILDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 L + R G PVL+LTA+D+L ++V L GADDYL KPF L E+ AR+ AL RR Sbjct: 61 SALAQMRNDGNTTPVLLLTAKDSLQDKVTSLNTGADDYLVKPFDLEELTARIYALARRNA 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 A N++ G + ++ +R GE +TL KEF LL L N VLSR+ I + ++ Sbjct: 121 RHAQNDIHVGPLTINVPQRTVKRDGETITLTAKEFDLLFYLASNENIVLSRQQILDHVWE 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYTLGEK 219 +D E SN ++V++ +LR+K+ +D I+TV G+GY L + Sbjct: 181 YDYESYSNLIDVYIKNLRKKIDTDENVKLIQTVRGVGYVLKTE 223 >UniRef50_Q3B3K7 Two component transcriptional regulator, winged helix family n=9 Tax=Bacteroidetes/Chlorobi group RepID=Q3B3K7_PELLD Length = 232 Score = 313 bits (803), Expect = 3e-84, Method: Composition-based stats. Identities = 89/221 (40%), Positives = 125/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L+IED+ I +K GL + F+VD G G E S YD ++D LP + G Sbjct: 1 MRLLIIEDEPGIARFLKEGLEEEHFAVDTAFDGESGLELGMSNDYDLCLIDWMLPKLSGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++ R+ R+ G PV+ LTARD L + V GL GADDY+ KPFA E+ AR+ A +R+ Sbjct: 61 EVCRQLRKAGSAVPVIFLTARDTLDDVVFGLGAGADDYVKKPFAFEELLARIRARLRQNT 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 L G + LDP A LTL PKEFALLE L+RN RV +R I E ++ Sbjct: 121 PTTGP-LTAGALWLDPETHRAGCNRHDLTLTPKEFALLEYLLRNLDRVCTRSRIIEHVWD 179 Query: 181 WDEEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTLG 217 + ++ ++V+V+ LRRKL + I+TV G+GY + Sbjct: 180 IHFDADTSVIDVYVNFLRRKLEAAGCTGLIKTVRGVGYVIR 220 >UniRef50_Q88JD6 DNA-binding response regulator n=6 Tax=Gammaproteobacteria RepID=Q88JD6_PSEPK Length = 220 Score = 313 bits (803), Expect = 3e-84, Method: Composition-based stats. Identities = 108/219 (49%), Positives = 143/219 (65%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LL+EDD+ +G+GI GL + G+++DW G G AL +D VILDL LP MDG Sbjct: 1 MRLLLVEDDIALGEGICDGLRQEGYTLDWLRDGVSGLHALQHETFDLVILDLGLPRMDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++LR R G PVLILTARDAL +R+ GL GADDYL KPF L E+ ARL AL+RR+ Sbjct: 61 ELLRRLRAGGDSLPVLILTARDALDDRIAGLDAGADDYLVKPFDLNELKARLRALLRRSV 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G+A + H V LDP + G + L PKE+ LL L+ G+V +R+ + + LY Sbjct: 121 GRAKVLIEHAGVSLDPTTQQVQYNGVEVVLTPKEYVLLHELLAQPGKVFTRERLTQLLYG 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK 219 WDEE SN +EV+++HLR+KL + IRTV GIGY + K Sbjct: 181 WDEEPESNTLEVNIYHLRKKLFNGLIRTVRGIGYLVEVK 219 >UniRef50_B4WMF1 Response regulator receiver domain protein n=2 Tax=Cyanobacteria RepID=B4WMF1_9SYNE Length = 871 Score = 313 bits (803), Expect = 3e-84, Method: Composition-based stats. Identities = 85/215 (39%), Positives = 126/215 (58%), Gaps = 4/215 (1%) Query: 7 EDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREW 66 EDD + I+ L + +D T G +G+ PYD +++D LP +DG + ++ Sbjct: 2 EDDRALAGAIEQLLLSHHYVMDLATDGIEGRGMAEVFPYDLILMDWMLPKLDGMQLCQQL 61 Query: 67 REKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNE 126 R +G P+++LTARDA +RV GL GADDYL KPF E+ AR+ AL+RR+ G S Sbjct: 62 RNEGNSTPIILLTARDASTDRVAGLDAGADDYLVKPFEFEELLARIRALLRRSEGIVSPV 121 Query: 127 LRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTWDEEVT 186 L+ G++ LDP T P+ L PKE+ALLEL +RN R+ S + +K++ +++ T Sbjct: 122 LQWGDLQLDPCSSRVTCGDVPIALTPKEYALLELFLRNPERIFSLDSLLDKVWPFEDTPT 181 Query: 187 SNAVEVHVHHLRRKLG----SDFIRTVHGIGYTLG 217 +V H+ LR+KL SD I TV+G+GY L Sbjct: 182 VASVRTHIKGLRQKLRQVGLSDVISTVYGLGYRLR 216 Score = 98.3 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 59/130 (45%), Gaps = 7/130 (5%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 +L+++DD + ++ L GF ++ Q + L D ++LD+ +P + G D+ Sbjct: 571 LLVVDDDSSMLTLLQKLLQPWGFKIEILCDPSQFWQTLEKVEPDLLLLDIKMPQLSGFDL 630 Query: 63 LREWRE--KGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARL-----EAL 115 + R + P+L ++A E +GADDY+ KP E+ AR+ + Sbjct: 631 CQVVRSDPRWHELPILFMSAHTDEKTIQEVFSVGADDYIRKPIVAPELVARVLGWLARSR 690 Query: 116 MRRTNGQASN 125 RR + + Sbjct: 691 DRRLRTEIDS 700 >UniRef50_B9XE94 Two component transcriptional regulator, winged helix family n=2 Tax=Verrucomicrobiales RepID=B9XE94_9BACT Length = 224 Score = 313 bits (803), Expect = 4e-84, Method: Composition-based stats. Identities = 87/223 (39%), Positives = 130/223 (58%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL++ED+ I+ L F+VD G + + P+DA++LD+ LPG DG Sbjct: 1 MRILVVEDEKKTASFIRKALQAESFAVDVSHDGTEALLLASNTPFDAIVLDIMLPGRDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +LR+ R++ + PVL+L+AR + ERVEGL GADDYL KPFAL E+ AR+ ++ RR+N Sbjct: 61 SVLRQLRQQKNQTPVLLLSARGEVNERVEGLNAGADDYLPKPFALAELIARVRSIGRRSN 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 S L+ ++ LD R A G L +E+ LLE LMR GR+ R I EK++ Sbjct: 121 EPKSVLLQVADLTLDTITRQAQRGGTSFELTTREYRLLEFLMRTPGRICGRMAILEKVWD 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYTLGEK 219 +D + +N V+V++ LR K+ + TV +GY + E+ Sbjct: 181 YDFDPGTNLVDVYIKRLREKVDEGFEPKLLHTVRNVGYVMKEQ 223 >UniRef50_Q3MGM2 Sensor protein n=22 Tax=Bacteria RepID=Q3MGM2_ANAVT Length = 1629 Score = 312 bits (801), Expect = 5e-84, Method: Composition-based stats. Identities = 83/224 (37%), Positives = 127/224 (56%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL++EDD L + L+ ++V+ + G E + + YD ++LD+ LP +DG Sbjct: 1 MKILIVEDDELNAYALTAVLTNQNYAVEVGSDGITAWELIQTYDYDLILLDVILPRLDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + R+ R G++ P+L+LT D+ E+ GL GADDY+ KPF E+ AR+ AL+RR Sbjct: 61 SLCRQIRSSGRQMPILLLTGCDSSHEKAIGLDAGADDYVVKPFDEEELVARVRALLRRGG 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 A L GN+ LDP L+L PKE+ALLEL +R++ RV S +I E +++ Sbjct: 121 TTAQPILEWGNLQLDPSSCEVRYNQNLLSLTPKEYALLELFLRHSRRVFSCSMILEHIWS 180 Query: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGEK 219 +++ AV H+ LR KL D + TV+GIGY L + Sbjct: 181 YEDTPGEEAVRTHIKGLRMKLRNAGAPGDLVETVYGIGYRLKAQ 224 Score = 87.5 bits (217), Expect = 3e-16, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 6/115 (5%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 ++L ++DD I ++T L G V RQ E L D +ILD+ +P +G + Sbjct: 382 KVLAVDDDPQILAILQTLLHPWGLQVITLDDPRQFWETLRDVNPDLLILDVEMPYTNGIE 441 Query: 62 ILREWRE--KGQREPVLILTAR--DALAERVEGLRLGADDYLCKPFALIEVAARL 112 + + R + P+L LT + +V +GADD++ KP E+ R+ Sbjct: 442 LCQVVRNDPQWSELPILFLTVHKDGEIVNQV--FSVGADDFVSKPIVGPELVTRI 494 Score = 76.7 bits (189), Expect = 5e-13, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 43/77 (55%), Gaps = 2/77 (2%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 +L+ +DD LI +++ L + G+ V G++ + + D ++LDL +PGM+G + Sbjct: 1381 VLVCDDDPLIRTELQSLLEQGGYRVVTVATGKEAIASASTQHPDVIVLDLLMPGMNGWET 1440 Query: 63 LREWRE--KGQREPVLI 77 + +E + + P++I Sbjct: 1441 MAMLKESTETKHIPIVI 1457 Score = 44.3 bits (105), Expect = 0.002, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 12/122 (9%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RIL++EDD + + T + GR+ D +ILDL LP DG Sbjct: 1502 RILIVEDDADLAELFVTLFERHDIETFSAKTGREAIHLSQEVNPDLLILDLILPETDGFA 1561 Query: 62 ILREW--REKGQREPVLILTARD-ALAERVEGLRLGADDYL------CKPFALI--EVAA 110 ++ ++ PV++ +A+D +ER L+LG ++L K F E+ Sbjct: 1562 VVDWLQKHQRLCNIPVVVYSAKDLDESERKR-LKLGHTEFLTKGRVTTKEFEQRVIELLQ 1620 Query: 111 RL 112 R+ Sbjct: 1621 RI 1622 >UniRef50_C4XS15 OmpR family two-component response regulator n=2 Tax=Desulfovibrio RepID=C4XS15_DESMR Length = 223 Score = 312 bits (801), Expect = 6e-84, Method: Composition-based stats. Identities = 86/223 (38%), Positives = 131/223 (58%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD I I GL + GF+VD G G + PY I+D+ LPG+DG Sbjct: 1 MRILLVEDDEKIASFILGGLRQSGFAVDHAANGPDGLHLAATEPYCVAIIDVMLPGLDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT- 119 ++ E R + P++IL+A+ ++ +RV GL G DDYL KPF+ E+ AR++AL+RR+ Sbjct: 61 QVIEELRRRKIMTPIIILSAKRSVEDRVRGLETGGDDYLSKPFSFAELLARVQALIRRST 120 Query: 120 NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 + L G + ++ R + + L+P+EFALLE MRN G+VLS+ +I E ++ Sbjct: 121 SASEPTRLTVGELSMNLLTREVSRGETAVQLQPREFALLEYFMRNPGKVLSKTMIMEHVW 180 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTLGE 218 + + +N V+V V LR K+ D+ + T+ G+GY L E Sbjct: 181 DYHFDPQTNLVDVLVCRLRNKIDRDYDRKMLHTLRGVGYVLKE 223 >UniRef50_B4WME0 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WME0_9SYNE Length = 236 Score = 312 bits (800), Expect = 6e-84, Method: Composition-based stats. Identities = 83/234 (35%), Positives = 130/234 (55%), Gaps = 16/234 (6%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M +L ED+ I ++ GL + GF V++ G E YD ++LD+ +PG DG Sbjct: 1 MHVLFAEDEPKIASFVQIGLKEQGFVVEYCDHGDIAYEKAIQNEYDVILLDIMMPGKDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 IL+ R+ G+ PV++LTARD L +R++GL LGADDY+ KPF + E+ AR+ A++RR+ Sbjct: 61 FILKNLRQVGRNTPVILLTARDELDDRLQGLNLGADDYIAKPFFVEELIARIHAVVRRSA 120 Query: 121 GQASNELRHGNVMLDPGKRIATLA------------GEPLTLKPKEFALLELLMRNAGRV 168 G+ N + G LD R T + + L +EF LLE LMR+ GRV Sbjct: 121 GEQPNLVTVGPFKLDRITRTVTCQSEAQSESQSEGTQQVVELTTREFNLLEYLMRSPGRV 180 Query: 169 LSRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYTLGE 218 +R + E ++ +D ++N V+V + LR+K+ +I +V G+GY + Sbjct: 181 FTRTQMLEHVWGYDFNPSTNVVDVCIQRLRKKIDMKGNERWIESVRGVGYRFRQ 234 >UniRef50_UPI00016B25CE two component transcriptional regulator, winged helix family protein n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B25CE Length = 224 Score = 311 bits (799), Expect = 9e-84, Method: Composition-based stats. Identities = 81/224 (36%), Positives = 131/224 (58%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPG--MD 58 MRIL++ED+ + I L G+++D +G + PYDA+I+D +PG D Sbjct: 1 MRILIVEDEKKLARAISRTLKNEGYAIDIEYNSSEGYAMASTQPYDALIIDRMMPGDFSD 60 Query: 59 GRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR 118 G D+L++ R+ G P ++LTA ++++ GL GADDYL KPFA+ E+ ARL A++RR Sbjct: 61 GLDMLKKLRKDGISTPAIVLTALGETSQKITGLDAGADDYLAKPFAIDELLARLRAILRR 120 Query: 119 TNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 L+ G + +D R + + L KE+ALL+ LM+++G+ LS++ I E + Sbjct: 121 PKKAQPTILKVGKLHIDTTNRTVEFDNKKIDLTAKEYALLQYLMKSSGQTLSKEQIMEHV 180 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTLGE 218 + +D ++ N VE ++ LR+K+ +I+TV GIGY L E Sbjct: 181 WNFDADILPNTVEAYIKALRKKIDEKYKVKYIKTVRGIGYRLEE 224 >UniRef50_B6J7N7 Transcriptional regulatory protein n=8 Tax=Gammaproteobacteria RepID=B6J7N7_COXB1 Length = 232 Score = 311 bits (799), Expect = 9e-84, Method: Composition-based stats. Identities = 98/221 (44%), Positives = 148/221 (66%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYS--APYDAVILDLTLPGMD 58 MR+LL+EDD +GDGI+ GL + G ++DW G+ + L S +D +ILDL LP Sbjct: 10 MRVLLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRS 69 Query: 59 GRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR 118 G D+L+ REK PV+ILTARD + +R++GL G+DDY+ KPF L E+ AR+ A+ RR Sbjct: 70 GLDVLKTIREKNDPTPVVILTARDTVDDRIKGLDAGSDDYMTKPFDLEELCARMRAMQRR 129 Query: 119 TNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 + +A + HG++ LDP + T + + + +EFALL+ L+ NAGRV+SR+ + + L Sbjct: 130 SKERAKPIISHGDITLDPASHVVTFKKKEVMVSRREFALLQKLLENAGRVISREQLNQTL 189 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK 219 Y W E + SNA+EVH+H+LR++ G+ IRT+ G+GY + +K Sbjct: 190 YGWGENIDSNALEVHIHNLRKRFGAKLIRTIRGVGYMVEKK 230 >UniRef50_D2QX61 Two component transcriptional regulator, winged helix family n=3 Tax=Planctomycetaceae RepID=D2QX61_9PLAN Length = 223 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 95/221 (42%), Positives = 139/221 (62%), Gaps = 4/221 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M++L+IEDD ++G ++ GLS+ G W G+ G E + +DA++LD+ LP G Sbjct: 1 MKLLVIEDDPVLGKALERGLSEAGHFCQWERTGKSGLEQASTQQFDALVLDVMLPDTTGM 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +++R+ R G PVL+LTA ++ +RV GL GADDYL KPFA E+ ARL+A+ RRT Sbjct: 61 EVVRKIRHDGIGTPVLMLTALGSVDDRVAGLNSGADDYLVKPFAFPELLARLDAISRRTK 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + S++L+ G ++LD R T L+L P EF+LLE LMR AG+V++RK++ E L+ Sbjct: 121 DRPSSQLKVGPLVLDLTNRKVTRNDSELSLTPTEFSLLEFLMRYAGQVVTRKMLCEHLWE 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYTLG 217 D E +N VEVH++ LR K+ I+TV G GY L Sbjct: 181 SDWEGVTNVVEVHINRLRGKIDRGFSEPLIQTVRGRGYVLR 221 >UniRef50_C6QDD0 Two component transcriptional regulator, winged helix family n=5 Tax=Proteobacteria RepID=C6QDD0_9RHIZ Length = 262 Score = 310 bits (797), Expect = 1e-83, Method: Composition-based stats. Identities = 84/223 (37%), Positives = 133/223 (59%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L+IEDD ++ L + G + D G G YD +I+D LP +DG Sbjct: 37 MRVLVIEDDRETAQFLQKSLKENGHTADLAGDGEAGLALATDGAYDVLIVDRMLPLLDGL 96 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +++ R +G R PVLIL+A + +RV+GLR G DDYL KP+A E+ AR+EAL RRT Sbjct: 97 SVIKSLRAEGNRTPVLILSALGEVDDRVKGLRAGGDDYLTKPYAYSELLARVEALGRRTA 156 Query: 121 GQASNE-LRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 + + G+++LD T +GE + L+P+E+ LLE LM++AG+V++R ++ E ++ Sbjct: 157 PEEQQTRISVGDLVLDRLSHRVTRSGEHILLQPREYRLLEYLMQHAGQVVTRTMLLEHVW 216 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTLGE 218 + + +N ++VHV LR K+ +F + TV G GYT+ + Sbjct: 217 DYHFDPQTNVIDVHVSRLRAKIDKNFDKPLLHTVRGAGYTIRD 259 >UniRef50_A8ZNT0 Two-component transcriptional regulator/diguanylate cyclase (GGDEF) n=1 Tax=Acaryochloris marina MBIC11017 RepID=A8ZNT0_ACAM1 Length = 792 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 86/222 (38%), Positives = 132/222 (59%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL++EDD L+ + ++T L + ++V+ T G+ E + + YD ++ D+ LP +DG Sbjct: 1 MRILVVEDDELVAEALQTLLVDLNYAVELATDGQTAAELVEAFEYDLILSDVMLPRLDGV 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + ++ R +G + P+L+LT +D+ +R GL GADDY+ KPF E+AAR+ AL+RR Sbjct: 61 GLCQQLRSQGYQIPILLLTGKDSSHDRAIGLDAGADDYVVKPFDPEELAARVRALLRRGE 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 L+ N+ LDP L L PKE+AL+EL+MRN RV S +I E ++T Sbjct: 121 AIKPPILKWENLQLDPRACEVKYQDVLLKLTPKEYALVELMMRNTRRVFSCGMILEHIWT 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGS-----DFIRTVHGIGYTLG 217 +++ AV H+ LR+KL + D I TV+GIGY L Sbjct: 181 YEDTPGEEAVRTHIKGLRQKLKASGAPTDLIETVYGIGYRLK 222 Score = 92.9 bits (231), Expect = 7e-18, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 12/154 (7%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RI++++DD I + + G V + Q E L ++P D ++LD+ +P + G D Sbjct: 489 RIMIVDDDPQILETVAALCKPWGLEVIGLDEPTQFWETLTNSPPDLLLLDVEMPEIGGID 548 Query: 62 ILREWRE--KGQREPVLILTARDALAERV-EGLRLGADDYLCKPFALIEVAARLEALMRR 118 + R R + ++ P++ LTA A+ V + GADD++ KP E+ R+ + R Sbjct: 549 LCRVVRNDIQWEQLPIIFLTA-HTEADVVNQVYASGADDFISKPIVGPELVVRILNRLER 607 Query: 119 TNGQASNELRHGNVMLDPGKRIATLAG--EPLTL 150 T Q +DP R+ + L L Sbjct: 608 TRLQRRLS------TIDPLARVLSRHESTHALEL 635 >UniRef50_Q026B5 Two component heavy metal response transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q026B5_SOLUE Length = 238 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 94/221 (42%), Positives = 132/221 (59%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL++ED+ I D + GL G++VD G + ++ YD V+LD LP MDG Sbjct: 1 MRILVVEDEKRIADFLCRGLEGAGYAVDAALTGGAALDLIHDTDYDLVVLDRMLPDMDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L + R + PVLIL+AR AL +RV+GL GADDYL KPFA +E+ AR+ AL+RR Sbjct: 61 QVLEKMRSRKAGPPVLILSARGALDDRVKGLEQGADDYLVKPFAFVELLARVRALLRRGQ 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 L+ ++ LD +R T E + L PKEF +LE +MRN GR LSR +I E ++ Sbjct: 121 P-TPERLQVSDLALDCIRRKVTRGAETIDLAPKEFGILEYMMRNKGRPLSRTMIVEHVWD 179 Query: 181 WDEEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTLG 217 D + +N V+V++ HLR K+ I+TV GIGY + Sbjct: 180 MDYDGLTNIVDVYIRHLRSKIDDRFQQKLIQTVRGIGYMIE 220 >UniRef50_A5WDA5 Two component transcriptional regulator, winged helix family n=14 Tax=Gammaproteobacteria RepID=A5WDA5_PSYWF Length = 224 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 115/216 (53%), Positives = 148/216 (68%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RILLIEDD I DGI GL G VDWF+ +QG+ AL +DAV+LDLTLP DG Sbjct: 3 RILLIEDDSTIADGIVLGLKSHGMMVDWFSDAKQGEIALQDGMFDAVLLDLTLPKGDGMT 62 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 +L+ WR K PVLI+TARDA+A RV GL GADDYL KPFAL EV ARL+ALMRR+ G Sbjct: 63 VLKNWRAKHIDTPVLIITARDAIANRVAGLNAGADDYLVKPFALDEVVARLQALMRRSQG 122 Query: 122 QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTW 181 + E+R+G V P + + G+ + L KE A+LE ++ + ++ SR +E+KLY W Sbjct: 123 RCQPEVRYGEVAYQPQNQQVSYQGKMVELTIKEVAILEQMLTHPKQIHSRASLEDKLYGW 182 Query: 182 DEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLG 217 +++ SNA+EVH+HHLR+KLG+DFI T GIGY L Sbjct: 183 QQDIESNAIEVHIHHLRKKLGNDFILTKRGIGYYLN 218 >UniRef50_Q01473 Protein rcaC n=1 Tax=Fremyella diplosiphon RepID=RCAC_FREDI Length = 651 Score = 308 bits (792), Expect = 6e-83, Method: Composition-based stats. Identities = 85/222 (38%), Positives = 126/222 (56%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+ILL+EDD ++ + L+ + VD G G + YD +ILD+ LP +DG Sbjct: 1 MKILLVEDDDVLIKVLTKNLTTHHYIVDVVKDGEMGWTYGSTFEYDLIILDIMLPNLDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + + +R +G P+L+LTA+D + +V+GL GADDY+ KPF IE+ AR+ AL+RR + Sbjct: 61 SLCKRFRAQGYTVPILLLTAQDNITAKVQGLDAGADDYVVKPFDPIELIARIRALLRRGS 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 L G+++L+P T G PL L E+ LLELL+RN V S + + +KL++ Sbjct: 121 NNPFPLLTWGDLLLNPSTCEVTYNGCPLNLTTMEYDLLELLLRNCQHVFSSEELLDKLWS 180 Query: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLG 217 ++ + V HV LR KL DFI T+HG GY L Sbjct: 181 SEDFPSEATVRSHVRRLRHKLVAAGAPHDFIATMHGRGYYLK 222 Score = 94.4 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 5/119 (4%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 ++++++DD + T L GF V +Q L + DA++LD+ +P ++G + Sbjct: 527 KVMILDDDQDWLRTLPTLLKPWGFKVTTLADPQQFWTVLQAVTPDALVLDVNMPQINGFE 586 Query: 62 ILREWRE--KGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR 118 + + R QR PVL L+ + + +G DDYLCKP +E+A R+ +RR Sbjct: 587 LCQLLRSDPHWQRLPVLFLSVLTDPTTQNQAFAVGGDDYLCKPVKGVELANRI---LRR 642 >UniRef50_UPI00017468BB two component transcriptional regulator, winged helix family protein n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017468BB Length = 227 Score = 308 bits (791), Expect = 8e-83, Method: Composition-based stats. Identities = 82/217 (37%), Positives = 127/217 (58%), Gaps = 1/217 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L++EDD + + L + ++VD G +G + YD ++LD+ LPG+ G Sbjct: 12 MRVLVVEDDPDLRRSLVATLREENYAVDAAGDGAEGFQRALENEYDVIVLDVMLPGLSGW 71 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + L++ R PVL+LTARDA+ +RV+GL GADDYL KPF + E+ AR+ AL+RR Sbjct: 72 EFLQKLRPTKTS-PVLMLTARDAVQDRVKGLNQGADDYLTKPFDIEELLARIRALIRRAA 130 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 GQ L ++ +D R GE + + +E+ L+E L + G V+SR + E L+ Sbjct: 131 GQPQPVLTIRDLSIDTAARKVLWKGEEVPVTAREYTLIEYLALHQGEVVSRTTLYEHLFD 190 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLG 217 D+ SN ++VHV +LR+KL + I T G GY++ Sbjct: 191 EDDSTLSNLLDVHVSNLRKKLAPELITTRRGHGYSIE 227 >UniRef50_Q20YF2 Two component transcriptional regulator, winged helix family n=24 Tax=Proteobacteria RepID=Q20YF2_RHOPB Length = 221 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 99/218 (45%), Positives = 134/218 (61%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILLIEDD + I L + G++VD G G S YDA ILDL LPG+DG Sbjct: 1 MRILLIEDDTRLARQIAEALERAGYTVDRSADGEDGWFMGDSGVYDAAILDLGLPGLDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +LR WR+ + PVLILTAR + E+V GLR GADDYL KPF + E+ AR+EAL+RR + Sbjct: 61 SVLRRWRDAKRAMPVLILTARASWREKVTGLREGADDYLTKPFEIEELLARIEALIRRAS 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G A+ E+ + LDP + + G PL L E+ L LM + +V+S+ + E +Y Sbjct: 121 GHATAEISVAGLRLDPSTQRISRDGAPLDLTALEYRALAYLMMHPAKVVSKTELTEHIYG 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE 218 D++ SN +EV V+ LR+K+G+D IRT G GY L + Sbjct: 181 QDDDRDSNVIEVLVNRLRKKIGADAIRTRRGQGYQLAD 218 >UniRef50_A6CDX9 Two component transcriptional regulator, winged helix family protein n=2 Tax=Bacteria RepID=A6CDX9_9PLAN Length = 231 Score = 307 bits (789), Expect = 1e-82, Method: Composition-based stats. Identities = 98/219 (44%), Positives = 129/219 (58%), Gaps = 3/219 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RIL++ED+ I D + GLS+ G+ V+ GR G L S +D VILD LP DG Sbjct: 4 RILVVEDEARIADFLVRGLSEEGYGVEHAEDGRIGWLLLNSETWDLVILDWWLPVEDGIQ 63 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 +LR +R+K + PVL LTARDA+ ERV GL GADDYL KPFA E+ AR+ AL+RR Sbjct: 64 LLRRFRQKNRTTPVLFLTARDAVTERVTGLDAGADDYLTKPFAFDELLARVRALLRRPGQ 123 Query: 122 QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTW 181 + L + ++ D + T G PL L KEF+LL +RN G+VLSR I + ++ Sbjct: 124 ASGVVLEYADIRADLETQRVTRGGTPLDLTAKEFSLLLFFLRNPGKVLSRTRIYDTVWDD 183 Query: 182 DEEVTSNAVEVHVHHLRRKL---GSDFIRTVHGIGYTLG 217 + SN +EVHV LR KL G I+T+ G GY L Sbjct: 184 SYDGLSNTLEVHVKELRHKLEACGPRVIQTLRGRGYVLE 222 >UniRef50_C7LY45 Two component transcriptional regulator, winged helix family n=2 Tax=Actinobacteria (class) RepID=C7LY45_ACIFD Length = 236 Score = 307 bits (789), Expect = 1e-82, Method: Composition-based stats. Identities = 85/222 (38%), Positives = 129/222 (58%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L+++D+ + +K GLS GF+VD + G G + APYD ++LD+ LPG++G Sbjct: 1 MRLLIVDDEENLLASLKRGLSAEGFAVDTASDGTTGLDMARHAPYDCIVLDIMLPGVNGF 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + RE+ P+L+LTA+D + E L GADD L KPF+ + AR+ AL+RR Sbjct: 61 KFTQLLREERNWTPILMLTAKDGEYDEAEALDTGADDVLKKPFSFTVLVARIRALLRRNV 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 L+ G++ LDP T + L +EF+ LELL+RN G VL ++ I ++ Sbjct: 121 ESHPPILQAGDLTLDPASHRVTRGNVTIDLTTREFSFLELLLRNKGHVLRKQDIIAHVWD 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTLGE 218 +D E SN VEV++ +LR+K+ F I T+ G+GY L E Sbjct: 181 YDFEGDSNIVEVYIGYLRKKIDVPFGTKAITTIRGVGYRLEE 222 >UniRef50_B2IZ13 Sensor protein n=11 Tax=Cyanobacteria RepID=B2IZ13_NOSP7 Length = 989 Score = 307 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 85/222 (38%), Positives = 128/222 (57%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL++EDD L + L+ ++V+ T G + + + YD ++LD+ LP +DG Sbjct: 1 MKILIVEDDGLNAYTLTNLLTNQNYAVEVATDGDAAWDCIQAYDYDLILLDVVLPKLDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + R+ R + P+L++T R++ E+ GL GADDYL KPF + E+ AR+ AL+RR Sbjct: 61 SLCRKIRSNNLQMPILLMTGRNSSHEKAIGLDAGADDYLVKPFDIEELVARIRALLRRPA 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + L G + LDP A A L L PKEFALLEL +RN+ RV S +I E L++ Sbjct: 121 VTSPPVLESGKLRLDPSSCEAVYARNLLPLTPKEFALLELFLRNSRRVFSCGMILEHLWS 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGS-----DFIRTVHGIGYTLG 217 +++ AV H+ LR+KL + D + TV+GIGY L Sbjct: 181 YEDTPQEEAVRTHIKGLRQKLKAVGAPGDLVETVYGIGYRLK 222 Score = 89.4 bits (222), Expect = 9e-17, Method: Composition-based stats. Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 4/114 (3%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +IL+++DD I ++T LS G Q E L + D +ILD+ LP ++G + Sbjct: 397 KILVVDDDPQIQALLQTLLSPWGLRAIALENPLQFWETLEAVAPDMLILDVELPYINGIE 456 Query: 62 ILREWREKGQ--REPVLILTARDALAERV-EGLRLGADDYLCKPFALIEVAARL 112 + R R P+L LT AE V + +GADD++ KP E+ R+ Sbjct: 457 LCRLVRNDSHWSELPILFLTVHSD-AEMVNQVFSIGADDFVSKPIVGPELVTRI 509 >UniRef50_Q15Y65 Two component transcriptional regulator, winged helix family n=3 Tax=Proteobacteria RepID=Q15Y65_PSEA6 Length = 222 Score = 307 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 94/214 (43%), Positives = 132/214 (61%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD + D + L G++V+ Q AL + + +ILDL LP MDG Sbjct: 1 MRILLVEDDRSLSDALSQSLRSEGYAVNGACTAAQALSALATGEFTIMILDLGLPDMDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++LR+ P LILTARD++ +++ GL GADDYL KPF + E+ ARL + RR Sbjct: 61 EVLRQAHRNKHSVPTLILTARDSMTDKITGLDSGADDYLAKPFDMQELLARLRVMERRLG 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 S+ + GNV+LD T L +EF LL+ LM NAGR+ S+ +E KLY Sbjct: 121 TATSSLINIGNVVLDLATHQVTADNNEKELSRREFMLLKALMENAGRIQSKSQLETKLYE 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGY 214 W +E++SNA+EVH+H+LR+KL DFI+T+ G+GY Sbjct: 181 WGDELSSNAIEVHIHNLRKKLPKDFIKTIRGVGY 214 >UniRef50_O07776 Transcriptional regulatory protein tcrA n=21 Tax=Actinobacteria (class) RepID=TCRA1_MYCTU Length = 253 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 86/221 (38%), Positives = 123/221 (55%), Gaps = 4/221 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RIL++ED+ + + L++ G +VD GR A+ YDAV+LD+ LPG+DG + Sbjct: 24 RILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGFE 83 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + R + PVL+LTAR A+ +R+ GL GADDYL KPF L E+ ARL AL RR Sbjct: 84 VCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGPI 143 Query: 122 QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTW 181 L G++ LDP + A + L KEF LLE L+R G V +R + E+ + Sbjct: 144 PRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWDA 203 Query: 182 DEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTLGE 218 E SN V+V++ +LR K+ F + T+ G GY L + Sbjct: 204 AYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLRK 244 >UniRef50_D2PLZ1 Two component transcriptional regulator, winged helix family n=5 Tax=Actinomycetales RepID=D2PLZ1_9ACTO Length = 236 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 93/223 (41%), Positives = 128/223 (57%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL++ED+ + I GL GF+V+ G G YDA++LDL LPG+ G Sbjct: 1 MRILVVEDERRLARAIGHGLEDHGFTVELAHDGETGLWKGREQDYDAIVLDLMLPGLSGD 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++ R+ R G P+LILTAR GL LGADDYL KPF+ + ARL AL+RRT Sbjct: 61 EVCRQLRAAGCWTPILILTARVGAEAEAGGLNLGADDYLRKPFSYQVLIARLNALLRRTA 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 L G+++LDP +R P+ L +EF++LE LMRNAG S+ I + ++ Sbjct: 121 PARPVNLVVGDLVLDPARRTVRRGTTPIELTRREFSVLEYLMRNAGSTRSKAEILDHVWG 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTLGEK 219 D + N VEV+V +LRRK+ F IRTV G GY +G++ Sbjct: 181 ADFDREPNVVEVYVGYLRRKIDQPFGTGSIRTVRGHGYLMGDE 223 >UniRef50_A0KN62 DNA-binding response regulator n=41 Tax=Gammaproteobacteria RepID=A0KN62_AERHH Length = 229 Score = 307 bits (787), Expect = 2e-82, Method: Composition-based stats. Identities = 112/216 (51%), Positives = 148/216 (68%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD+++GDG+ L G++VDW QG L S + A+ILDL LP +DG Sbjct: 1 MRILLVEDDVMLGDGMVDALRSSGYTVDWLQQGLPALSVLKSEEFAALILDLNLPDIDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +LR+ R +GQ PVLILTARDAL +RV GL G+DDY+ KPFAL E+ ARL AL+RR+ Sbjct: 61 SLLRKLRREGQTLPVLILTARDALDDRVLGLDAGSDDYMVKPFALQELNARLRALVRRSK 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 GQA L +G + L P + T GEP+ L P E+ LL+ L+ +GRVLS+ +++ LY Sbjct: 121 GQAQAVLEYGELQLYPESQQVTYRGEPVKLTPHEYKLLQELITQSGRVLSKDQLQQSLYG 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTL 216 WDE SNAVEVH+HHLR+K SD IR + G+GY + Sbjct: 181 WDEGAESNAVEVHIHHLRKKFYSDLIRNIRGVGYIV 216 >UniRef50_C7PP48 Two component transcriptional regulator, winged helix family n=20 Tax=Bacteria RepID=C7PP48_CHIPD Length = 235 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 81/234 (34%), Positives = 128/234 (54%), Gaps = 15/234 (6%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M++LLIED+ + I+ L++ G+ V G+ G + + +ILD+ LPGM+G Sbjct: 1 MKLLLIEDEPSVVSFIRRYLAEAGYDVSVALDGQSGLQMATENNFQLIILDVMLPGMNGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + + R++ P+L+LTA + V GL GADDYL KPF E+ AR+ +L+RR N Sbjct: 61 AVCKALRQQQLTTPILMLTALGSTENVVAGLDSGADDYLVKPFKQAELLARIRSLLRRNN 120 Query: 121 -----------GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVL 169 N L+ ++ LD + A+ G+ + L E+ LLE +MRN RVL Sbjct: 121 DTAAAATPAVTQSNGNVLKVADLELDLNTKSASRYGQTIVLTATEYRLLEYMMRNPKRVL 180 Query: 170 SRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYTLGEK 219 SR I E ++ D + + V+V+V++LR+K+ I+TV G+GY L E+ Sbjct: 181 SRMEILENVWGVDFNMNTKVVDVYVNYLRKKVNRKDQPALIQTVVGMGYMLKEE 234 >UniRef50_B5W2T9 Multi-component transcriptional regulator, winged helix family n=2 Tax=Arthrospira RepID=B5W2T9_SPIMA Length = 774 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 82/222 (36%), Positives = 117/222 (52%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+ILL++DD + + L + VD T G G + S Y VILD+ LP ++G Sbjct: 1 MKILLVDDDQYLNQQLSKSLKAHNYVVDIATDGESGWNYIESFEYSLVILDIMLPKLNGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + R+ R + PVL+LTARD+ ++V GL GADDYL KP E+ AR+ AL+RR Sbjct: 61 ALCRKLRSHNYQMPVLLLTARDSCEDKVLGLDAGADDYLVKPIRAEELIARMRALLRRAT 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + G++ L+P K + L L PKE+ L+EL +R+ RV S I E L++ Sbjct: 121 ISLPPVIHWGDLTLNPAKCEISYQKSVLPLTPKEYGLMELFIRSPYRVFSYDSIIEHLWS 180 Query: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLG 217 +E N V H+ LR KL I V+GIGY + Sbjct: 181 IEEPAADNTVRAHIKSLRNKLKDAGGDPKLIENVYGIGYRIK 222 Score = 89.0 bits (221), Expect = 9e-17, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 2/115 (1%) Query: 8 DDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWR 67 DD I + ++ L +G V R+ + L + D +I+D+ +P +G D+ + R Sbjct: 493 DDPQILELLEALLCPLGLEVKTLNTPRKFWQVLEISNPDLLIIDVEMPHYNGIDLCQVIR 552 Query: 68 E--KGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + + P+L+LT R E R GADD++ KP E+ ARL + + R+ Sbjct: 553 NEPRWRYLPILVLTNHTDPETRAELFRAGADDFISKPVVGPELIARLFSRLHRSR 607 Score = 44.7 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 2/102 (1%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPG--MDGR 60 +L+++ D ++G+ I G + + ++L+L P DG Sbjct: 364 LLIVDHDTILGEQIIREAHSRGLEARLAPGVGIARAMMVEYQPSIILLELNFPKPEEDGL 423 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKP 102 +L + PV+I + R + +R+ RLG+ +L KP Sbjct: 424 MLLEDIAYHHPEIPVVIFSRRSSFIDRLTVCRLGSRAFLQKP 465 >UniRef50_B4WG55 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WG55_9SYNE Length = 636 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 79/222 (35%), Positives = 122/222 (54%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LL++DD + + + L+ + VD G G + YD V+LD LP + G Sbjct: 1 MRVLLVDDDNALASLLTSQLAAHNYIVDHVADGETGWAYASTFDYDLVVLDWMLPQLSGV 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + + R +G P+L+LT ++ ++EGL GADDY+ KPF + E+ AR+ L+RRT Sbjct: 61 HLCQRLRRQGCGVPILLLTVKNEQRNKIEGLEAGADDYVVKPFDMDELLARIRVLLRRTP 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + L GN+ LDP +G+ +TL KE++LLEL +R+ +V S ++ KL++ Sbjct: 121 HETEPVLIWGNLQLDPISTQVHYSGQLVTLTAKEYSLLELFLRSPHQVYSATVLLGKLWS 180 Query: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLG 217 E + V H+ LR+KL D I TVHG+GY L Sbjct: 181 SQEFPSEATVRSHLRRLRQKLSQAGAAPDLIETVHGLGYRLK 222 Score = 79.8 bits (197), Expect = 6e-14, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 10/128 (7%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +I++++DD + L F + T ++ D V+ D+ +P ++G + Sbjct: 510 KIMIVDDDAHYLKQVVQLLHPWNFEITPLTNPQRFWTLFNQVLPDLVVFDVEMPQINGFE 569 Query: 62 ILREWRE--KGQREPVLILTARDALAERVEGLRLGADDYLCKP-----FALIEVAARLE- 113 + R R K Q P++ L+ A++ + +GADDY+ KP FA + RL Sbjct: 570 LARVLRSHTKWQHLPIVFLSVHGDAAKQEQAFAIGADDYITKPVHGKAFATR-LLNRLNQ 628 Query: 114 -ALMRRTN 120 A +RR Sbjct: 629 TADIRRPA 636 >UniRef50_Q8DHN5 Two-component response regulator n=2 Tax=Chroococcales RepID=Q8DHN5_THEEB Length = 229 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 88/222 (39%), Positives = 128/222 (57%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M++L+IEDD I + L+ + V+ G + L + +D +ILDL LPGMDG Sbjct: 1 MKVLVIEDDRTIAGLVAESLAHQQYIVEIAYDAETGLDYLEATAFDLLILDLGLPGMDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + R++G P+LILTARD +++V GL GADDY+ KPF L E+ AR+ AL+RR Sbjct: 61 SFCQTIRQRGHSLPILILTARDTSSDKVMGLDAGADDYMVKPFDLPELLARVRALLRRKP 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + L G ++LDP + T + L L PKE+A+LE+L+R+ R+LSR I + + Sbjct: 121 LPFAPILHWGALILDPDRAKVTYNHQELHLTPKEYAILEVLLRHGSRILSRSAIMDYAWP 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLG-----SDFIRTVHGIGYTLG 217 DE V+VH+ LR KL ++ I TV+G GY L Sbjct: 181 LDEMPGEETVKVHLRSLRHKLKAVGAPANLIETVYGFGYRLN 222 >UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacteria RepID=C7H8D4_9FIRM Length = 299 Score = 306 bits (785), Expect = 4e-82, Method: Composition-based stats. Identities = 80/220 (36%), Positives = 119/220 (54%), Gaps = 5/220 (2%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +IL+++D+ I + I+ L G+ + G L +D VILD+ +P MDG Sbjct: 74 KILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPFMDGMT 133 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT-- 119 LRE R + PV+ILTAR +++ GL GADDY+ KPF+ E+ AR++A++ RT Sbjct: 134 CLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNRTMP 193 Query: 120 -NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 + + + G + +D +AGE ++L PKEF LL L N G LSR+ I +K+ Sbjct: 194 RSEASDGTMTFGELTIDTASHTVRVAGEDVSLTPKEFDLLVFLASNKGIALSREKILQKV 253 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGS--DFIRTVHGIGYTL 216 + +D V+ HV LR LG +I TV GIGY Sbjct: 254 WNYDYFGEDRTVDTHVKMLRGHLGKCRGYIATVWGIGYKF 293 >UniRef50_A4J2J4 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J2J4_DESRM Length = 223 Score = 305 bits (784), Expect = 5e-82, Method: Composition-based stats. Identities = 86/221 (38%), Positives = 135/221 (61%), Gaps = 5/221 (2%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 R+L+I+DD I ++ L+ G+ V+ G +G P + +ILD+ LPG+DG + Sbjct: 4 RVLVIDDDPKITAMLQRALTYEGYRVEVANDGYKGMNMAKENPPELLILDIMLPGLDGWE 63 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 I + +R+ P+LIL+ARD + +V+GL LGADDYL KPFAL E+ AR++AL+RR Sbjct: 64 ICQRFRKDNF-TPILILSARDEVESKVKGLNLGADDYLGKPFALEELLARVQALLRR-RI 121 Query: 122 QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTW 181 A+ ++ ++ +D R AG LTL +EF LL M + +VL+R+ I ++++ Sbjct: 122 TANKVIQFSDLKMDLEAREVRRAGNLLTLTSREFDLLAHFMHHPNQVLTREQIIDRVWGL 181 Query: 182 DEEVTSNAVEVHVHHLRRKL---GSDFIRTVHGIGYTLGEK 219 D SN +EV+++ LR+K+ GS I TV G+GY L E+ Sbjct: 182 DFTGGSNVLEVYINMLRQKIEDYGSRIIHTVRGVGYVLKEQ 222 >UniRef50_C8KZR7 Two component transcriptional regulator n=5 Tax=Proteobacteria RepID=C8KZR7_9PAST Length = 225 Score = 305 bits (784), Expect = 5e-82, Method: Composition-based stats. Identities = 99/218 (45%), Positives = 142/218 (65%), Gaps = 2/218 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD +I D + L ++VDW G+ +EAL YD V+LDL LPG DG Sbjct: 1 MRILLVEDDRMIADAVSANLKDNHYAVDWVNNGKTAEEALMIQSYDLVLLDLGLPGQDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L R+K PVLI+TARD L R+ GL GADDY+ KPF + E+ AR+ A++RR Sbjct: 61 QVLSHIRQKKNSTPVLIVTARDDLDSRLSGLDGGADDYIIKPFDMAELQARMRAVLRRHG 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGE--PLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 GQ+S +L +G + LDP + +AG+ +TL KEF++L L+ AG +LSR +E+K+ Sbjct: 121 GQSSPKLTNGVITLDPTSYVVEIAGQNSTITLSNKEFSVLHALISRAGMILSRADLEDKI 180 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTL 216 Y W EEV SNA++ +H LR+K+G + I+ V G+G+ + Sbjct: 181 YAWGEEVESNAIDFLIHGLRKKIGKEQIKNVRGVGWMM 218 >UniRef50_Q21EC1 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=Q21EC1_SACD2 Length = 232 Score = 305 bits (784), Expect = 5e-82, Method: Composition-based stats. Identities = 79/229 (34%), Positives = 125/229 (54%), Gaps = 12/229 (5%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RILLIED I I L + + V + G +G + +D +ILD+ LP MDG Sbjct: 4 RILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIMLPSMDGLQ 63 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR--- 118 + + R K P+L+LTA+ + ++RV GL GADDYL KPF++ E+ AR++A +RR Sbjct: 64 VCQHLRAKNIFTPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHLRRTDM 123 Query: 119 ----TNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLI 174 + QA + L G + +D KR T+ + +TL KEF LL + + G+V SR+ + Sbjct: 124 SQKESTPQADDALHFGELCIDKTKRRLTIGDKEITLTAKEFDLLLYMASHPGQVFSREKL 183 Query: 175 EEKLYTWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218 + ++ + + V H++ LR KL +D ++ TV G+GY + Sbjct: 184 LDAVWGYQHSGYEHTVNSHINRLRTKLETDTSNPKYVLTVWGVGYKFYD 232 >UniRef50_C7PAJ7 Two component transcriptional regulator, winged helix family n=3 Tax=Sphingobacteriales RepID=C7PAJ7_CHIPD Length = 266 Score = 305 bits (783), Expect = 7e-82, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 131/226 (57%), Gaps = 8/226 (3%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RIL++ED++ + + +K GL + GF VD GR GK S YD VILDL LP +G + Sbjct: 41 RILVVEDEIKVANTVKKGLEENGFEVDVAYDGRMGKSLAASNNYDLVILDLNLPHANGYE 100 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + R K P+++LTA + ++++ LGADDYL KPF E+ AR+ ++R Sbjct: 101 VCEVIRRKNNAIPIIMLTALGGMDDKMQAFELGADDYLVKPFDFRELMARIRVFLKRAGS 160 Query: 122 QASN----ELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEK 177 + ++ G++ +D K+ T G+ + L KE+ LLE L + G+V+S+ +I EK Sbjct: 161 EVQENNQYKIVIGDLEIDREKKEVTRGGKKIALTAKEYQLLEFLALHKGKVISKLVIAEK 220 Query: 178 LYTWDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTLGEK 219 ++ D + +N +EV+++ LR+K+ DF + T G+GY L E+ Sbjct: 221 VWDIDFDTGTNVIEVYMNFLRKKIDKDFDNKLLHTKTGMGYYLAEE 266 >UniRef50_Q2RPG3 Two component transcriptional regulator, winged helix family n=8 Tax=Alphaproteobacteria RepID=Q2RPG3_RHORT Length = 229 Score = 305 bits (782), Expect = 9e-82, Method: Composition-based stats. Identities = 92/219 (42%), Positives = 128/219 (58%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LL+ED+ + ++ L + GF+VD G + + P+DAV+LDL LP +DG Sbjct: 1 MRVLLVEDEPTLALTLRRVLERAGFAVDLADDGEEALFLGETEPFDAVVLDLGLPRLDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +LR WR G PVLILTAR E+V G GADDY+ KPF + EV RL+AL+RR Sbjct: 61 GVLRRWRAAGIGVPVLILTARGGWPEKVAGFEAGADDYVTKPFEMEEVVLRLKALIRRAA 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G S EL G + LD ++ G PL L +E+ +L L+ G+ +SR I + +Y Sbjct: 121 GHPSTELVAGPLRLDTTSGRGSVEGRPLDLTAQEYKILTYLLLRQGQTVSRSDIVDHVYD 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK 219 D + SN ++V V LRRKLG+ I TV G+GY L + Sbjct: 181 RDSDRDSNVIDVLVGRLRRKLGAPLIHTVRGLGYRLEAE 219 >UniRef50_Q12PS6 Two component transcriptional regulator, winged helix family n=79 Tax=Proteobacteria RepID=Q12PS6_SHEDO Length = 243 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 82/221 (37%), Positives = 125/221 (56%), Gaps = 4/221 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LL+EDD+ + +K L +S+D + G G PYDA I+D+ LP +DG Sbjct: 1 MRLLLVEDDIALQQNLKQHLQNANYSLDIASDGELGLYQGLEFPYDAAIIDIGLPKLDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +++ RE+ P+L+LTARD+ ++V GL GADDYL KPF E+ AR++AL+RR Sbjct: 61 SLIKTLRERQVSYPILVLTARDSWQDKVSGLDAGADDYLTKPFHPEELLARMKALIRRAA 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G+AS+ + +G ++ + L E+ L E LM + G V S+ ++ E +Y Sbjct: 121 GKASSLVSNGPFSVNLTSLEVKRHEVLVNLSSSEYKLFEFLMLHPGEVQSKSVLTEHIYD 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYTLG 217 D ++ SN +EV + LR+KL D I T+ G GY L Sbjct: 181 QDFDLDSNVIEVFIRRLRKKLDPDNQYQLIETLRGQGYRLN 221 >UniRef50_P39663 Alkaline phosphatase synthesis transcriptional regulatory protein sphR n=34 Tax=Cyanobacteria RepID=SPHR_SYNE7 Length = 257 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 91/233 (39%), Positives = 126/233 (54%), Gaps = 17/233 (7%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYS---------APYDAVILDL 52 RIL++ED+ +I D + L + GF+VD GR S D V+LDL Sbjct: 25 RILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLDL 84 Query: 53 TLPGMDGRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARL 112 LP ++G D R R +G P+L+L+A+D +RV GL +GADDYL KPF E+ AR Sbjct: 85 MLPAVNGLDFCRLLRRQGVTVPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELVARC 144 Query: 113 EALMRRTNGQA---SNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVL 169 AL+RR+ Q LR+ + L P + L LTL PKEF LLEL MR+ RV Sbjct: 145 RALLRRSQNQPAETPAVLRYEGLKLFPEECRVLLDDRELTLSPKEFRLLELFMRHPRRVW 204 Query: 170 SRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLG 217 SR + EK++ D S ++VH+ LR K+ ++ ++ TV G GY LG Sbjct: 205 SRDQLLEKIWGIDFMGDSKTIDVHIRWLREKIEANPSNPSYLLTVRGFGYRLG 257 >UniRef50_A6X2C4 Two component transcriptional regulator, winged helix family n=59 Tax=cellular organisms RepID=A6X2C4_OCHA4 Length = 255 Score = 304 bits (780), Expect = 1e-81, Method: Composition-based stats. Identities = 80/222 (36%), Positives = 126/222 (56%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL+IEDD ++ ++ G S D G G + YD +++D LP DG Sbjct: 21 MKILVIEDDREAARYLEKAFTEAGHSADIAGDGETGYTLAENGSYDVLVVDRMLPKRDGL 80 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++ R +G PVLIL+A + +RV GLR G DDYL KP+A E+ AR+E L RR++ Sbjct: 81 SVVAGLRARGMETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 140 Query: 121 GQASNEL-RHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 + ++ + R G++ LD A +TL+P+EF LLE LMR+AG+V++R ++ E ++ Sbjct: 141 PREADTIYRVGDLELDRLAHTARRQDVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 200 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTLG 217 + + +N ++VH+ LR K+ + TV G GY L Sbjct: 201 DYHFDPQTNVIDVHISRLRSKIEKGFDGPLLHTVRGAGYMLK 242 >UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria RepID=Q2JPV2_SYNJB Length = 230 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 123/221 (55%), Gaps = 4/221 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 IL+IED+ + ++T L+ G+ V + G G A D V+LD LPG+ G + Sbjct: 10 HILVIEDEAKLARFVETELTCEGYRVSVASDGMAGLRAACDQNPDLVLLDWMLPGISGLE 69 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 I R R G R PV+++TARD +++R GL GADDY+ KPF++ E+ +R+ +R+ Sbjct: 70 ICRRLRSTGNRVPVVLMTARDEVSDRAAGLDAGADDYVVKPFSIQELLSRIRIYLRQPRR 129 Query: 122 QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTW 181 +L +++LDP R T + L KE+ LL LM + +VL+R+ I E ++ Sbjct: 130 SRDGQLVFMDLILDPVTREVTRGERQVELTAKEYDLLRYLMEHPRQVLTRQQILEHVWGC 189 Query: 182 DEEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYTLGE 218 D SN +EV++ +LR K+ I+TV G+GY L + Sbjct: 190 DFTGDSNIIEVYIRYLRLKIEGPGEKRLIQTVRGVGYVLRD 230 >UniRef50_Q2T4E0 DNA-binding response regulator n=76 Tax=Bacteria RepID=Q2T4E0_BURTA Length = 255 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 108/218 (49%), Positives = 144/218 (66%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LL+EDD LIG G++ GL + GF+VDW G AL + Y ++LDL LP DG Sbjct: 36 MRVLLVEDDPLIGSGLEQGLKQEGFAVDWVQNGDAATLALRTTSYGLLLLDLGLPDKDGL 95 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L R + PV+++TARDAL +R+ GL GADDYL KPFAL E+ AR+ A+ RR Sbjct: 96 AVLAALRRRDDALPVIVVTARDALPDRIAGLDCGADDYLVKPFALEELLARIRAVNRRQT 155 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G+A L G + LDP + G+ + L PKEF LL LMR G V+SR+ EE+LY+ Sbjct: 156 GRAQTVLTVGALRLDPARHQVWRGGDEVALSPKEFVLLHELMREPGAVISREQFEERLYS 215 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE 218 W EE+ SNAV+VH+H+LR+KLG D I TV G+GY +G+ Sbjct: 216 WGEEIESNAVQVHIHNLRKKLGHDTILTVRGVGYRIGD 253 >UniRef50_D1B9J7 Two component transcriptional regulator, winged helix family n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B9J7_THEAS Length = 226 Score = 303 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 89/221 (40%), Positives = 135/221 (61%), Gaps = 4/221 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L+IED+ + ++ G ++G VD GR G + + S YD VILD+ LP MDG Sbjct: 1 MRLLIIEDNEDLCQLLREGFEELGHEVDTAGDGRNGLDLIRSGKYDCVILDIMLPEMDGF 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +++ + R++G PV++LTA+D++ +RV GL GADDYL KPF E+ AR+ ALMRR+ Sbjct: 61 EVMDQVRDEGHDVPVIMLTAKDSVEDRVHGLEQGADDYLTKPFDFKELMARVNALMRRSG 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 Q + L+ G + LDP R + + L+ +EF +LELLMR +V SR I +++ Sbjct: 121 DQRRSILKCGPLTLDPVARECRVGDIKVPLRRREFDILELLMRYENQVFSRDKIIAQVWQ 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTLG 217 + + TSN V+VH+ +LR KL + TV G+GY + Sbjct: 181 KEYDGTSNVVDVHIKYLRDKLRPFNLDMMVVTVRGVGYKVA 221 >UniRef50_C0QL69 Transcriptional regulatory protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QL69_DESAH Length = 232 Score = 303 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 81/226 (35%), Positives = 134/226 (59%), Gaps = 9/226 (3%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M IL+++DD + D ++ L + + ++ G + + ++ YD ++LD+ LP MDG Sbjct: 6 MNILIVDDDSELLDHLRRALERKHYRIETAENGEKALDKIFEITYDLILLDIMLPLMDGL 65 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L+ R+ G PVL+LTAR + +RV+GL GADDYL KPF++ E+ AR+ AL+RR + Sbjct: 66 SVLKHMRQAGLNTPVLMLTARGDVEDRVKGLDYGADDYLAKPFSMAELMARIRALLRR-D 124 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G+ L G + L+ R TL P++L KEF++LE L+ N G +SR + E ++ Sbjct: 125 GKRDTILTAGPLSLNTISRTVTLDNGPISLTSKEFSILEFLLHNRGSAVSRFNMAEHVWG 184 Query: 181 WDEEVT--SNAVEVHVHHLRRKLG------SDFIRTVHGIGYTLGE 218 + + SN V+VH+ +LR+K+ IRT+ GIG+ + + Sbjct: 185 NEFDPFSMSNFVDVHIKNLRKKISPPGDKYPPIIRTIRGIGFIIDD 230 >UniRef50_A5UWJ8 Two component transcriptional regulator, winged helix family n=1 Tax=Roseiflexus sp. RS-1 RepID=A5UWJ8_ROSS1 Length = 231 Score = 303 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 93/222 (41%), Positives = 128/222 (57%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LLIED+ + + GL + G++VDW G QG E YD +ILDL LP +DG Sbjct: 1 MRLLLIEDEDDLAHALVRGLRQQGYAVDWAADGEQGCELASINEYDLIILDLNLPALDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 D+ R R +LILTARD ERV GL GADDYL KPF E+ AR+ AL+RR Sbjct: 61 DVCRYLRANYPHLLILILTARDQPEERVIGLDTGADDYLIKPFHFGELLARIRALLRRDL 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 L++ ++ LDP + L + L L KEFA+L LMR+ G V++++++ E ++ Sbjct: 121 RVRQPLLQYRDLKLDPATQTVWLNNQRLNLTRKEFAILSYLMRHQGEVITQEMLLEHVWD 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLG 217 +N V VH++ LRRKL +I TV G+GY LG Sbjct: 181 GTVNPFTNTVRVHINALRRKLRDTIAPYRYIETVVGVGYRLG 222 >UniRef50_B4WSX3 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WSX3_9SYNE Length = 640 Score = 303 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 82/222 (36%), Positives = 127/222 (57%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL++DD + D + L K + VD T G +E + YD +ILD+ LP ++G Sbjct: 27 MRILLVDDDAALMDILAEQLIKQRYVVDIATDGESAEECVNLFSYDFIILDMGLPDIEGI 86 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + + R++ P+L+LTA D +V+ L GADDY+ KPF E+ AR+ AL RR N Sbjct: 87 SLCQRLRQQKITSPILMLTAEDNSKAKVKALNAGADDYVVKPFDFEELFARIRALRRRDN 146 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + L+ G++ +DP PL + PKE+ +LEL +R+ +V S I + L++ Sbjct: 147 NTLAAVLQQGDLRVDPNTFEVFYQDRPLRVTPKEYTMLELFLRHPNQVFSIDAIIDNLWS 206 Query: 181 WDEEVTSNAVEVHVHHLRRKLG-----SDFIRTVHGIGYTLG 217 +++ + +AV HV LR+KL DFI+TV+G+GY L Sbjct: 207 FEDPPSEDAVRTHVKGLRQKLKAGGAPKDFIQTVYGLGYRLK 248 Score = 83.3 bits (206), Expect = 5e-15, Method: Composition-based stats. Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 2/128 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +++ I+DD + ++T LS GF + + L S D +++D+ +P +G + Sbjct: 513 KVVAIDDDPQVLALLQTILSPWGFQTTALENADRLFDTLESVRPDLLLIDVEMPETNGLE 572 Query: 62 ILREWR--EKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 I R R E+ Q+ P+L L+ D + + +GADD++ K E+ RL ++RT Sbjct: 573 ICRVLRADERWQQLPILFLSVHDEDHTQHQAFNVGADDFISKTTMATELPTRLINRLKRT 632 Query: 120 NGQASNEL 127 L Sbjct: 633 GRAVPALL 640 >UniRef50_B8G179 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiales RepID=B8G179_DESHD Length = 234 Score = 303 bits (778), Expect = 2e-81, Method: Composition-based stats. Identities = 80/223 (35%), Positives = 132/223 (59%), Gaps = 7/223 (3%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +ILL+EDD +I + + L + G++V +G + E L D V+LD+ LP +DG D Sbjct: 3 KILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPELDGLD 62 Query: 62 ILREWR--EKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMR-- 117 + ++ R ++ P+++L+ARD +A+RV GL LGADDY+ KPF+ E+ AR++A +R Sbjct: 63 VCKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIKARLREE 122 Query: 118 -RTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEE 176 R + L G++ + P + T+ GE +TL KEF LL + M+ +V SR+ + + Sbjct: 123 RRNSTPPPLSLTWGDLEIWPESYMVTIKGEQVTLTGKEFELLHIFMKRPNQVFSREYLLQ 182 Query: 177 KLYTWDEEVTSNAVEVHVHHLRRKLG--SDFIRTVHGIGYTLG 217 K++ + + V+VH+ +LR KL S I +V G+GY L Sbjct: 183 KVWGYTVSGDTRTVDVHISNLRSKLKSVSPIIESVRGVGYRLA 225 >UniRef50_Q1AZL3 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=Q1AZL3_RUBXD Length = 227 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 93/220 (42%), Positives = 127/220 (57%), Gaps = 4/220 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L++ED+ I ++ GLS G+S G G D V+LD+ LPG+DGR Sbjct: 1 MRVLIVEDEPGIVRMLERGLSAQGYSCLSAEDGETGLRMALEEDVDVVLLDIMLPGLDGR 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++LR R + PVL+LTARD + +V L GADDYL KPFA E+ AR+ AL+RR + Sbjct: 61 EVLRRLRLRRPGLPVLMLTARDEVETKVGSLDAGADDYLTKPFAFEELLARIRALVRRAD 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 S LR G++ LD R AG + L +EFALLE LMR+ +VLSR+ I ++ Sbjct: 121 QPESTALRAGDLKLDLLSRRVWRAGRQVELSSREFALLEYLMRHPRQVLSRQQILSAVWD 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYTL 216 + + SN V+V+V +LRRKL I TV G GY Sbjct: 181 YAFDPGSNVVDVYVRYLRRKLDRPGEPSLITTVRGAGYRF 220 >UniRef50_B4VMC7 Response regulator receiver domain protein n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VMC7_9CYAN Length = 362 Score = 302 bits (776), Expect = 4e-81, Method: Composition-based stats. Identities = 83/222 (37%), Positives = 125/222 (56%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL++ED+ + I GL++ + VD G G + + YD ++LD+ LP +D Sbjct: 1 MKILVVEDNPTLAQTIVAGLTQQNYVVDLAQDGETGLDNALAYNYDLILLDINLPHLDSI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + R R+ G P+++L+A + V GL GADDY+ KP + +AAR+ AL+RR Sbjct: 61 SLCRRLRQAGNTSPIVLLSASATTQDMVAGLDAGADDYIIKPCPVEGLAARVRALLRRNR 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 ++ L+ GN+ +DP T G+PL L PKE+ LL LLM + R+ S+ I EKL+T Sbjct: 121 DASTPTLQWGNLEIDPSTCEVTCLGQPLRLSPKEYGLLYLLMSSPTRIFSQDYIIEKLWT 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTLGE 218 + + V+ HV LRRKL D I TV+G GY L + Sbjct: 181 FGDPPNRETVKAHVKGLRRKLKKAGVGDIIETVYGFGYRLKD 222 >UniRef50_B2HUW9 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=12 Tax=Acinetobacter RepID=B2HUW9_ACIBC Length = 220 Score = 302 bits (776), Expect = 4e-81, Method: Composition-based stats. Identities = 89/218 (40%), Positives = 136/218 (62%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL EDD + I++ L G+ VDW +G A+ YD ++LD LP + G Sbjct: 1 MRILLAEDDRSQAESIQSWLELDGYQVDWVERGDYALTAIEQHDYDCILLDRGLPQLAGE 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L R K + PV+ +TARD++ +RVEGL LGA+DYL KPF+L E++AR+ A +R+ Sbjct: 61 KVLTTIRHKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQLRKQT 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + L G++ LD ++ AG+ + L KEF +L LM + +++R +EE LY Sbjct: 121 LNQQSILTWGDLQLDTQAKVVLCAGKTIDLTAKEFQILRKLMVHPEHIITRDQLEEALYA 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE 218 W EE+ SNA+EV ++ LR+K+GS I+T+ G+GY +G+ Sbjct: 181 WGEEIESNAIEVFIYQLRKKIGSSSIKTIRGLGYRMGD 218 >UniRef50_B2JHN0 Two component transcriptional regulator, winged helix family n=4 Tax=Burkholderia RepID=B2JHN0_BURP8 Length = 228 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 103/218 (47%), Positives = 139/218 (63%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD LIG G++ L GF+VDW G+ + AL + Y VILDL LP + G Sbjct: 10 MRILLVEDDDLIGSGLEVALRNAGFTVDWARDGQHAELALATTHYLLVILDLGLPKLSGM 69 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 D+L+ R +G PVL+LTA+D A++V GL GADDYL KPF L E+ +R AL+RR+ Sbjct: 70 DLLKSLRLRGNEIPVLVLTAKDTAADKVRGLDAGADDYLGKPFDLAELISRCRALIRRSQ 129 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G+ S + + +DP + + G + L +E+A+L L+ +AG R IEE LY Sbjct: 130 GRGSELIEWRGLSVDPVAQTVSKDGARVPLTAREWAVLIHLLTHAGVPQPRARIEESLYG 189 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE 218 W EEV SNA+EVHV +LR+KLG D IRTV G GY + + Sbjct: 190 WHEEVESNAIEVHVSNLRKKLGGDVIRTVRGFGYVVDK 227 >UniRef50_B8HQE6 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8HQE6_CYAP4 Length = 228 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 82/220 (37%), Positives = 127/220 (57%), Gaps = 4/220 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RIL++ED+ I ++ GL GF T + + +D +ILDL LPG DG Sbjct: 3 RILIVEDEPRIAAFVEKGLRSHGFVTSVATDANEALDLALGGAFDLLILDLGLPGQDGLQ 62 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 +L + R +G+ P++ILTARD + +++ GADDYL KPF E+ R++A +R G Sbjct: 63 VLGQLRGQGESLPIIILTARDDIRDKIASFEGGADDYLTKPFRFEELLLRVKARLRTNYG 122 Query: 122 ----QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEK 177 Q + L+ NV+LD R + L L +EF L E R+ G+VLSR+ + ++ Sbjct: 123 VPKRQEESVLKCDNVLLDLRTRKVKVGDRWLELSAREFTLAETFFRHPGQVLSREQLLDR 182 Query: 178 LYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLG 217 ++ +D + SN V+V+V +LR+KLG++ I TV G+GY L Sbjct: 183 VWGYDYDPGSNIVDVYVGYLRKKLGNELIETVRGMGYRLK 222 >UniRef50_Q2S8G9 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=3 Tax=Proteobacteria RepID=Q2S8G9_HAHCH Length = 228 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 86/221 (38%), Positives = 126/221 (57%), Gaps = 4/221 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+ED+ L+ ++ L K G++VD G PYD ++DL LP G Sbjct: 1 MRILLVEDEALLRGQLRDELVKHGYAVDTAEDGEVAAYLGKENPYDLAVVDLGLPKRTGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++++EWR G+ P+LILTAR ++V GL GADDYL KPF + E+ ARL AL+RR++ Sbjct: 61 EVIQEWRGMGKEFPILILTARGHWQDKVSGLEAGADDYLVKPFHVAELMARLGALLRRSS 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G +S ++ G + LD ++ + G L L E+ LE L+ AG+ +S+ + E LY Sbjct: 121 GFSSPVIQAGPMTLDTRAKLVQIDGSALELTAYEYNTLEYLVHRAGQAVSKTELTEHLYA 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYTLG 217 D + SN +EV + LR+KL D I T+ G GY Sbjct: 181 QDFDRDSNVIEVFIGRLRKKLDPDGVNKPITTLRGQGYRFN 221 >UniRef50_Q6FA81 Putative two-component response regulator n=1 Tax=Acinetobacter sp. ADP1 RepID=Q6FA81_ACIAD Length = 218 Score = 302 bits (775), Expect = 5e-81, Method: Composition-based stats. Identities = 86/218 (39%), Positives = 138/218 (63%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL+ EDD+ + IK+ L G+ VDW +G A+ YD ++LD LP G Sbjct: 1 MRILIAEDDISQAESIKSWLELDGYVVDWVDRGDYAIAAIKQHDYDCILLDRGLPKSSGD 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L R+ PV+++TARD++++RV GL LGA+DYL KPF+L E++AR+ + +R Sbjct: 61 QVLLTLRKHQSMTPVIMITARDSISDRVTGLDLGANDYLVKPFSLEELSARIRSHIRSMQ 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 Q + L N+ L+ + L+GE + L KEF +L +M+N RV++R+ +E LY Sbjct: 121 QQVDSLLCWKNIELNTQDKWVKLSGELVELTAKEFKVLHKMMQNPERVVTREQLESTLYA 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE 218 W +E+ SNA+EV ++ LR+K+G+++I+T+ G+GY + E Sbjct: 181 WGDEIESNAIEVFIYQLRKKIGTNYIKTIRGLGYRMSE 218 >UniRef50_A0LPJ2 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=A0LPJ2_SYNFM Length = 263 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 95/223 (42%), Positives = 137/223 (61%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L++EDD I D ++ L++ GF +D G QG E YDA+I+D+ LP MDG Sbjct: 32 MRVLVVEDDRQITDFLERALTEAGFKIDVAWNGPQGFELALKESYDAIIIDVILPVMDGL 91 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +IL++ R +G PVLIL+A+ ++++RV GL LG DDYL KPF L E+ AR+ +L+RR+ Sbjct: 92 EILQKLRNRGILTPVLILSAKGSVSDRVSGLELGGDDYLTKPFELAELLARVWSLIRRSK 151 Query: 121 -GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 Q + +L+ G++ LD R E L P+EFALLE LMRN GRV++R I E ++ Sbjct: 152 VNQETVQLKAGDLWLDLVSRRVFRGDEEFRLLPQEFALLEYLMRNKGRVVTRAEILENVW 211 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYTLGE 218 ++ +N VEVH+ LR KL ++T GY L E Sbjct: 212 GYNFVPATNVVEVHICRLREKLERPNKPRLLQTFRKAGYALVE 254 >UniRef50_A0PWB4 Response regulator mprA n=284 Tax=Bacteria RepID=MPRA_MYCUA Length = 232 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 92/226 (40%), Positives = 139/226 (61%), Gaps = 9/226 (3%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RIL+++DD + + ++ LS G++V+ G + E + S DA++LD+ +P +DG + Sbjct: 4 RILVVDDDRAVRESLRRSLSFNGYTVELAHDGVEALEMIASDRPDALVLDVMMPRLDGLE 63 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN- 120 + R+ R G P+L+LTARD+++ERV GL GADDYL KPFAL E+ AR+ AL+RRT Sbjct: 64 VCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTKL 123 Query: 121 ----GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEE 176 S + ++ LDP R T ++L EFALLE+L+ N RVL+R I E Sbjct: 124 EDDEAADSVAMTFSDLSLDPVTREVTRGARRISLTRTEFALLEMLIANPRRVLTRSRILE 183 Query: 177 KLYTWDEEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYTLGE 218 +++ +D + NA+EV+V +LRRK ++ I TV G+GY L E Sbjct: 184 EVWGFDFPTSGNALEVYVGYLRRKTEAEGEPRLIHTVRGVGYVLRE 229 >UniRef50_B1HZW1 Transcriptional regulatory protein cutR (Defective melC1 suppressor protein) n=6 Tax=Firmicutes RepID=B1HZW1_LYSSC Length = 230 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 81/224 (36%), Positives = 136/224 (60%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M++LL+ED+ ++ I GL K G++VD G++ E YD +ILDL LP MDG Sbjct: 1 MKLLLVEDEAVLSRIISKGLKKSGYAVDTAFDGKEALELFEINEYDLIILDLNLPKMDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++L + R + + +LIL+AR A+ +++ GL GA+DYL KPF E+ AR+ L+RR+ Sbjct: 61 EVLEQIRVQNEDVKILILSARSAIHDKIMGLDCGANDYLIKPFDFQELDARIRNLLRRSF 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 Q S + N+ LD K+I + GE + + KE+A+LE LM + +V+S + + E ++ Sbjct: 121 SQKSAIISFENITLDSSKKIVLVDGEMIHVTKKEYAILEYLMLHQNKVISSEELIEHVWD 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGS-----DFIRTVHGIGYTLGEK 219 + ++ SN+++ H+H LR+K+ + I+T+ G GY + E Sbjct: 181 SETDLFSNSLKFHIHSLRKKIADVLGEIEVIQTIRGQGYIITEN 224 >UniRef50_Q1IUY4 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IUY4_ACIBL Length = 232 Score = 302 bits (774), Expect = 7e-81, Method: Composition-based stats. Identities = 82/218 (37%), Positives = 128/218 (58%), Gaps = 4/218 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL+ ED+ + + ++ GL++ G SV G + S +DA++LD+ LPGMDG Sbjct: 1 MRILVAEDEKRLLELLRNGLAEEGHSVITSMNGVDALDIAMSGEFDALLLDVMLPGMDGF 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++ R R KG++ P+L+LTARDA ++ + GL GADDY+ KPF+ E+ ARL A+ RRT Sbjct: 61 EVARRLRHKGRQVPILMLTARDAESDIIRGLDNGADDYVTKPFSFSELLARLRAVTRRTG 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 S+ L ++ LD P+ L EF LL+ LM+NAGR +SR+ + ++ Sbjct: 121 PHRSSTLVCEDLTLDSASHEVFRGDRPIHLTRTEFLLLQKLMQNAGRPVSRQSLIGNVWG 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGY 214 +D + +N ++ + LR+K+ I+TV G GY Sbjct: 181 YDRAIENNTLDAFIRLLRQKVDTQGHPKLIQTVRGFGY 218 >UniRef50_O34903 Uncharacterized transcriptional regulatory protein ykoG n=5 Tax=Bacillales RepID=YKOG_BACSU Length = 228 Score = 302 bits (774), Expect = 7e-81, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 129/223 (57%), Gaps = 7/223 (3%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 IL++ED+ I ++ L G+SV G +G +A Y V+LD+ LPG+ G + Sbjct: 5 HILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGLSGLE 64 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 +LR R+ + PV++LTARD++ ++V GL +GA+DY+ KPF + E+ AR+ A +R+ Sbjct: 65 VLRRLRKTDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQNGT 124 Query: 122 QASNE---LRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 + + L + ++ ++ R + + L P+EF LL ++++ +VL+R+ I + Sbjct: 125 KTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILSSV 184 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTLG 217 + +D +N V+V++ ++R+KL + I T+ G+GY + Sbjct: 185 WGFDYIGDTNVVDVYIRYIRKKLDYPYEKQLIHTIRGVGYAIK 227 >UniRef50_B4B6S6 Multi-component transcriptional regulator, winged helix family n=1 Tax=Cyanothece sp. PCC 7822 RepID=B4B6S6_9CHRO Length = 638 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 83/222 (37%), Positives = 130/222 (58%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD L + LS ++VD G+ G + + YD +LD+ +P +DG Sbjct: 1 MRILLMEDDPLTRTVLTQTLSNHHYNVDVAKDGKSGLQLAQTYNYDLFLLDVVVPVLDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + ++ R +G +EP+++LTA+D+ ++++ GL GADDY+ KP L + AR+ AL+RR N Sbjct: 61 SVCQQLRSQGLQEPIVLLTAKDSSSDQIIGLDAGADDYIIKPVNLETLMARIRALLRRKN 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 S+ + GN+ L+ EP+ L KE+ALLEL + N R+ +R++I E+L+ Sbjct: 121 ASLSSVIEWGNLQLNLSNCEVNCENEPIHLTAKEYALLELFLVNPKRIFNRRVILERLWD 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYTLGE 218 E V H+ LR+KL SD I TV+G+GY L + Sbjct: 181 IGESPGEETVSTHIKCLRQKLKNAGVSDPIETVYGLGYRLRK 222 Score = 66.7 bits (163), Expect = 5e-10, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 2/102 (1%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTL--PGMDGR 60 IL+I+DD+ + + ++ +++ T ++ + +ILDL DG Sbjct: 394 ILMIDDDLALAERVRIEAQTWNLNLEIATDLTVARQIILQKTPAIIILDLNFDSASEDGF 453 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKP 102 +L E + P++I T R++L +R++ RLGA +L KP Sbjct: 454 TLLEELNQSRPNLPIIIFTGRESLNDRIKVARLGAKAFLHKP 495 Score = 65.2 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 2/78 (2%) Query: 26 SVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREK--GQREPVLILTARDA 83 V Q E L + + ++LDL +P +G ++ + R+ P+L L+ Sbjct: 543 EVITCHNPNQFWEMLTTYHPNLLVLDLEMPQFNGLELCQVVRQDPTWNDLPILFLSIYTD 602 Query: 84 LAERVEGLRLGADDYLCK 101 + GADDY+ K Sbjct: 603 EEMIQQMFAAGADDYISK 620 >UniRef50_B0KKE4 Two component transcriptional regulator, winged helix family n=22 Tax=Proteobacteria RepID=B0KKE4_PSEPG Length = 222 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 96/216 (44%), Positives = 132/216 (61%), Gaps = 1/216 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LL+ED++ + D + GL + G++VDW GR S PYD +ILDL LPG+ G Sbjct: 1 MRLLLVEDNVPLADELTAGLQRQGYAVDWLADGRDAVYQGQSEPYDLIILDLGLPGLPGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++L +WR G PVLILTAR + AER+EGL+ GADDYL KPF E+ R++AL+RR Sbjct: 61 EVLAQWRAAGLATPVLILTARGSWAERIEGLKAGADDYLSKPFHPEELQLRIQALLRRAR 120 Query: 121 GQAS-NELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 G A+ +L + LD ++ + G + L EF LL M + ++LS+ + E LY Sbjct: 121 GLANQPKLEAAGLHLDESRQCVSRDGVDIQLTAAEFRLLRYFMLHPQQILSKSHLAEHLY 180 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYT 215 + E SN +EVHV+HLRRKLG I T G GY Sbjct: 181 DGETERDSNVLEVHVNHLRRKLGRSVIETRRGQGYI 216 >UniRef50_B2A1Z8 Two component transcriptional regulator, winged helix family n=2 Tax=Firmicutes RepID=B2A1Z8_NATTJ Length = 233 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 125/226 (55%), Gaps = 9/226 (3%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 +L+++DD + + +K L GFSVD G+ G E + Y+ VILD+ LP MDG ++ Sbjct: 6 VLIVDDDKDLCNMVKLTLEHEGFSVDMAYDGKTGYEYVEKYNYNTVILDIMLPEMDGWEV 65 Query: 63 LREWREK--GQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + R + P+++LTA+ +++ GL+LGADDY+ KPF+ E+ AR+ AL+RR Sbjct: 66 CHKIRNSINNSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRALIRRDQ 125 Query: 121 --GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 L G++ +D + + L PKEF LL LL++N RV +R+ I EK+ Sbjct: 126 DFKDKDKILEKGDLTVDAHSYKVFVKDNEVDLPPKEFELLYLLIKNPERVFTREEILEKI 185 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGEK 219 + + + V+ HV +R+KL + I+TV G+GY K Sbjct: 186 WGFSFAGGTRTVDEHVKRIRKKLEPESGFDSLIQTVWGVGYKFEVK 231 >UniRef50_Q48H36 DNA-binding response regulator n=6 Tax=Gammaproteobacteria RepID=Q48H36_PSE14 Length = 222 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 95/215 (44%), Positives = 135/215 (62%), Gaps = 1/215 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LL+ED + + D + L + G++VDW GR + PYD ++LDL LPGM G Sbjct: 1 MRLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGATEPYDLIVLDLGLPGMPGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++L++WR KG PVLILTAR + +ER+EGL+ GADDYL KPF E+ R++AL+RR++ Sbjct: 61 EVLQQWRGKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120 Query: 121 GQAS-NELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 G A+ L + LD G++ + G + L EF LL M + G++LS+ + E LY Sbjct: 121 GLANQPTLESAGLNLDEGRQSVSRDGVDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGY 214 + E SN +EVHV+HLRRKLG + T G GY Sbjct: 181 DGENERDSNVIEVHVNHLRRKLGRAVVETRRGQGY 215 >UniRef50_C7MME5 Response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein n=2 Tax=Coriobacteriaceae RepID=C7MME5_CRYCD Length = 226 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 117/223 (52%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL++EDD + + + L + VD G G S YD +LD+ LP DG Sbjct: 1 MQILVVEDDPRLAEALAAILKANDYQVDVVGDGDAGLAYAQSGLYDCAVLDVMLPRRDGF 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + + R +G P+L+LTAR + ++VEGL GADDY+ KPFA +E+ AR+ +L RRT Sbjct: 61 SVAAQLRREGNALPILMLTARGEIRDKVEGLDAGADDYMTKPFAPVELLARIRSLTRRTG 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 L ++ LD G+ + L KEF ++ +LM RV S+ + K++ Sbjct: 121 SVEFETLSFNDITLDLDACELECKGKRIRLSQKEFDIMHVLMAQPSRVASKDSLISKVWG 180 Query: 181 WDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTLGEK 219 +D N VE +V LR+KL + I T+ G GY LG + Sbjct: 181 YDSTAADNNVEAYVSFLRKKLAFIGATTCIVTLRGQGYRLGTQ 223 >UniRef50_C0VPI8 Two-component response regulator n=4 Tax=Acinetobacter RepID=C0VPI8_9GAMM Length = 219 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 87/219 (39%), Positives = 135/219 (61%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL EDD + IK L G+SVDW +G A+ YD V+LD LP G Sbjct: 1 MRILLAEDDASQAESIKDWLEMDGYSVDWVERGDHAILAVEQHQYDCVLLDRGLPKASGD 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 IL+ R++ + PV+ +TA+D + +RVEGL LGA+DYL KPF L E++AR+ + +R+ Sbjct: 61 QILKSIRQRNLKTPVIFITAKDHIHDRVEGLDLGANDYLVKPFNLEELSARVRSQLRQHQ 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 A L+ ++ LDP + + A + + L KEF +L LM+ + +R+ +EE LY Sbjct: 121 VDAGQYLKFADLKLDPQAKTLSQAEQTVNLTAKEFQILYKLMQKPDHIFTREQLEESLYA 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK 219 W +E+ SNA+EV ++ +R+K+G +I+TV G+GY + ++ Sbjct: 181 WGDEIESNAIEVFIYQIRKKIGGQYIKTVRGLGYRMHQE 219 >UniRef50_A3QGG3 Two component transcriptional regulator, winged helix family n=8 Tax=Proteobacteria RepID=A3QGG3_SHELP Length = 226 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 82/221 (37%), Positives = 128/221 (57%), Gaps = 4/221 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LL+EDD+ + + ++ L +++D + G +G PYDA I+D+ LP +DG Sbjct: 1 MRLLLVEDDLALQENLRQHLLDANYTLDIASDGEEGLFQGREYPYDAAIIDVGLPKLDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++ RE+G P+LILTARD ++VEGL GADDYL KPF E+ ARL+AL+RR Sbjct: 61 ALIARLREEGIDYPILILTARDNWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRAA 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G++S +++G L+ + ++L E+ L E M + G V S+ ++ E +Y Sbjct: 121 GKSSPVIQNGPYSLNTSSHEIKFGDQDVSLSGSEYKLFEYFMLHIGEVKSKSILIEHIYD 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYTLG 217 D ++ SN +EV + LR+KL + I T+ G GY L Sbjct: 181 QDFDLDSNVIEVFIRRLRKKLDPNGQYGLIETLRGQGYRLK 221 >UniRef50_A6CWR0 Two-component system response regulator (Pho family) protein n=5 Tax=Vibrionales RepID=A6CWR0_9VIBR Length = 224 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 84/223 (37%), Positives = 124/223 (55%), Gaps = 6/223 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+ILLIEDD I + G + G +V T G G +A +D +ILD+ LP DG Sbjct: 1 MKILLIEDDSHIAKFLVNGFQQEGITVTHSTDGVDGLHEAVTADFDVIILDIMLPKKDGF 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++L E R +G PV+IL+A+ ++ ERV+GL+ GADDYL KPFA E+ AR + LMRR Sbjct: 61 EVLAELRGQGHATPVIILSAKHSVEERVQGLQSGADDYLVKPFAFPELLARCQTLMRRGK 120 Query: 121 GQASN--ELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 + EL +G + LD K + + + +EF L++LL+ N V+S+ I E + Sbjct: 121 PPSPQALELNYGPLNLDLLKHTLQREQQNIAINQREFMLMKLLLENPETVMSKTAILEHV 180 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTLG 217 + + +N V+V V LR K+ I T+ G+GY L Sbjct: 181 WGHQFDPQTNVVDVLVCRLRSKVDKGFATPLIHTLRGVGYVLK 223 >UniRef50_Q2G7V2 Two component transcriptional regulator, winged helix family n=1 Tax=Novosphingobium aromaticivorans DSM 12444 RepID=Q2G7V2_NOVAD Length = 227 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 87/225 (38%), Positives = 129/225 (57%), Gaps = 9/225 (4%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL+IED++ + + GL++ G V T G G E S +D ++LD+ LP MDG Sbjct: 1 MRILIIEDEIELAGALHRGLTQEGCKVTLATDGSTGLELAASLAFDFILLDVNLPDMDGF 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR-- 118 ++ RE+G P++++TARD +A+R+ GL+ GADDYL KPFA E+ AR++A+ RR Sbjct: 61 EVCARLREQGSTMPIIMVTARDEIADRIRGLKGGADDYLTKPFAFEELLARMDAIKRRMA 120 Query: 119 ----TNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLI 174 Q + G++ DP T AG P+ L KE +L LLM + G V+SR I Sbjct: 121 PSQGGKVQPDGRITVGDLHFDPRTMTLTRAGTPVQLTVKEMGVLRLLMESPGTVISRTEI 180 Query: 175 EEKLYTWDEEVTSNAVEVHVHHLRRK---LGSDFIRTVHGIGYTL 216 ++ +++ +N VEV++ LRRK LG + V G GY L Sbjct: 181 LRAVWGMEDDPLTNIVEVYLSRLRRKLHALGPPVVENVRGFGYRL 225 >UniRef50_C7N0N0 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=42 Tax=Bacteria RepID=C7N0N0_SLAHD Length = 240 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 119/225 (52%), Gaps = 9/225 (4%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RILL+ED+ I D + L + + V G+ E +D VILDL LP + G Sbjct: 10 RILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLMLPRVPGER 69 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + R R+ P+++LTA+ + +R+ GL LGADDYL KPF+ E+ AR+ AL+RR + Sbjct: 70 VCRAIRD-NSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRRVHA 128 Query: 122 QASN---ELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 + L G + +D + G+ + L EF LL L R GRV SR + EK+ Sbjct: 129 DSEPQREVLEFGELTIDVSGHKVLVGGKEVDLTASEFKLLTTLSRYPGRVYSRMELVEKV 188 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218 +D E ++ HV +LR K+G + ++ TVHG+GY + Sbjct: 189 LGYDFEGYERTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRFED 233 >UniRef50_D2BG66 DNA-binding response regulator, two-component system, OmpR family n=8 Tax=Bacteria RepID=D2BG66_DEHSV Length = 256 Score = 299 bits (768), Expect = 3e-80, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 127/227 (55%), Gaps = 11/227 (4%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +IL++EDD + + + L+K G++++ G + VILD+ LPG+DG + Sbjct: 31 KILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTYRLFKPSLVILDVMLPGIDGFE 90 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + R R + P+L+LTAR + +++V GL GADDYL KPF + E+ AR++AL+RR+ Sbjct: 91 LCRLIRTES-SVPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALLRRSQT 149 Query: 122 QASNE-----LRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEE 176 Q S L+ G++ + + + G L PKEF L +++N RV SR+ + E Sbjct: 150 QNSQTETTGGLKIGDLEIFIERHLVMRNGVALDFSPKEFDLFSFMVQNRCRVFSREQLLE 209 Query: 177 KLYTWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218 K++ +D + V+VH+ LR+K+ +D + TV G GY E Sbjct: 210 KVWGYDYPGWTRTVDVHISWLRQKIEADPSSPRHLITVRGTGYKFEE 256 >UniRef50_C9NWS1 DNA-binding heavy metal response regulator n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NWS1_9VIBR Length = 226 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 81/225 (36%), Positives = 124/225 (55%), Gaps = 6/225 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+ILLIEDD I + G + G ++ T G G S YD ++LD+ LP DG Sbjct: 1 MKILLIEDDTHIARFLINGFQQEGCTITHATNGVDGLHEAISESYDVIVLDIMLPQKDGF 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++L + R +G PVLIL+A+ ++ ERV+GL+ GADDYL KPFA E+ AR ++L RR Sbjct: 61 EVLAQLRGEGHATPVLILSAKHSVDERVKGLQSGADDYLVKPFAFPELLARCQSLARRGQ 120 Query: 121 GQASN--ELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 + +L + + LD K G + L +EF L++L++ N V+S+ I E++ Sbjct: 121 QNPAQSYQLSYSELSLDLLKHSLERNGASIQLNQREFMLIKLMLENPETVISKTAILEQV 180 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTLGEK 219 + + +N V+V V LR K+ I T+ G+GY L + Sbjct: 181 WGHQFDPQTNVVDVLVCRLRSKVDKGFDTPLIHTLRGVGYVLKSQ 225 >UniRef50_Q1IVX4 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1IVX4_DEIGD Length = 225 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 88/221 (39%), Positives = 129/221 (58%), Gaps = 6/221 (2%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 +L+IED+ I I+ L+ G++ + G G D VILDL LP +DG ++ Sbjct: 7 VLVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKFREVNPDLVILDLMLPVLDGLEV 66 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQ 122 R R+ P++ILTA+D + ++VEGL GADDYL KPF++ E+ AR+ A +RR N Sbjct: 67 ARRIRKTSN-TPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRRVNPA 125 Query: 123 ASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTWD 182 + E+R +++++ R G + L KEF LLELL RN G+V SR IEEK++ + Sbjct: 126 VTGEVRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEEKVW-PE 184 Query: 183 EEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYTLGEK 219 SN V+V++ +LRRKL I TV G+GY L E+ Sbjct: 185 YTGGSNVVDVYIGYLRRKLEEGGERRLIHTVRGVGYVLREE 225 >UniRef50_A4CE30 Probable two-component response regulator transcription regulator protein n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4CE30_9GAMM Length = 227 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 84/224 (37%), Positives = 129/224 (57%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD + ++ GL G+ + G++G E + ++LD+ LP ++G Sbjct: 1 MRILLVEDDDRVASFLERGLRAEGYFIVRACDGKEGLELAQEGDFQLILLDIMLPSLNGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++ + R K P+++LTA D + ++GLRLGADDY+ KPFA E+ AR+EA+ RRT Sbjct: 61 EVCQALRIKKNLVPIIMLTAMDESQDIIKGLRLGADDYVTKPFAYDELLARIEAVTRRTP 120 Query: 121 GQ--ASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 + +N L G + D I +L E ++L KE A+LELLM N G+ LSR+ I + Sbjct: 121 NEIKNTNILEFGPLCFDRSSYIVSLDNEEISLTVKEMAILELLMTNTGKYLSRERILSNV 180 Query: 179 YTWDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLG 217 + + + +N V+V++ LR+KL G I T GIGY L Sbjct: 181 WGMEMDPMTNVVDVYIGKLRKKLTIESKGESMIETKRGIGYRLN 224 >UniRef50_Q6F8E2 Transcriptional regulator n=19 Tax=Acinetobacter RepID=Q6F8E2_ACIAD Length = 226 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 103/223 (46%), Positives = 142/223 (63%), Gaps = 7/223 (3%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +IL+IEDD +I + T L F V+W G G L +D V+LDL LP MDG Sbjct: 3 KILIIEDDFMIAESTITLLKYHQFEVEWVNNGFDGLAHLAKQSFDLVLLDLGLPMMDGMQ 62 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 +L++ R+K PVLI++ARD L RVEGL GADDYL KP+ E+ AR+ AL+RRTN Sbjct: 63 VLKQIRQK-TGVPVLIISARDQLENRVEGLNQGADDYLIKPYEFDELLARINALLRRTNS 121 Query: 122 ------QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIE 175 Q L +G V+L+ K IAT G+ + L +E+A+L LM + ++ S+ +E Sbjct: 122 KDASSLQQDQVLSNGEVILNVEKHIATFQGKEIELSNREWAILIPLMTHPNKIFSKANLE 181 Query: 176 EKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE 218 +KLY +D EVTSN +EV++HHLR KLG +FIRT+ G+GY LG+ Sbjct: 182 DKLYDFDSEVTSNTIEVYIHHLRSKLGKNFIRTIRGLGYRLGQ 224 >UniRef50_C8PY86 DNA-binding response regulator n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PY86_9GAMM Length = 222 Score = 298 bits (766), Expect = 6e-80, Method: Composition-based stats. Identities = 82/219 (37%), Positives = 129/219 (58%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LL+EDD+ I D + L + ++VDW GR+ L YD ++LDL LP +DG Sbjct: 1 MRVLLVEDDVFIADSLIDSLEEEAYAVDWAKDGREAILTLKVEAYDVILLDLGLPEIDGM 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L R PVL+LTARD + +RV+GL GADDY+ KPFA+ E+ AR+ L+RR+ Sbjct: 61 SVLETLRSAKIDTPVLVLTARDQIKDRVKGLDAGADDYMTKPFAMSELLARMRVLVRRSQ 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G + N L+ G++ LD + G + + KE+ LL M +V S+ +E +Y Sbjct: 121 GNSHNTLQVGDLTLDINVKRLKRDGIEIDITAKEYMLLTTFMNAPDKVFSKSELENSIYN 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK 219 W+ + SNA+E ++ LR+K+G I+ + G+G+ + + Sbjct: 181 WEAGIESNAIEFLIYGLRKKIGQKRIKNIRGLGWYISAE 219 >UniRef50_P30843 Transcriptional regulatory protein basR n=126 Tax=Gammaproteobacteria RepID=BASR_ECOLI Length = 222 Score = 298 bits (766), Expect = 6e-80, Method: Composition-based stats. Identities = 100/216 (46%), Positives = 137/216 (63%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL++EDD L+ G+ G++ D T R +++L + Y V+LDL LP DG Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 L R+K PVLILTARD L +++ GL +GADDYL KPFAL E+ AR+ AL+RR N Sbjct: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 Q +EL GN+ L+ G+R + GE L L PKE+ALL LM AG + R+++ +Y Sbjct: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTL 216 WD E ++N +EVH+H+LR K+G IRTV G GY L Sbjct: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 >UniRef50_B4RXL0 Response regulator n=2 Tax=Gammaproteobacteria RepID=B4RXL0_ALTMD Length = 221 Score = 298 bits (766), Expect = 6e-80, Method: Composition-based stats. Identities = 94/218 (43%), Positives = 130/218 (59%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD + D + L ++VD G L D V+LDL LP DG Sbjct: 1 MRILLVEDDRPLSDALALSLKNANYAVDCVYTGADAMTTLSIGQTDIVVLDLGLPDTDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++L+ R+K PVLILTARD +++++ GL GADDYL KPF + E+ ARL L RR Sbjct: 61 NVLKSIRKKNATLPVLILTARDKVSDKISGLDAGADDYLPKPFEIDELLARLRVLERRLG 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + + NV LD T+ E + L +E +L+ L+ NAGRVLS+ +E KLY Sbjct: 121 TASQTIITIKNVSLDTAHHTLTIDNETIHLPRRELMVLKALVENAGRVLSKNQLENKLYE 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE 218 W EEV SN +EVHV HLR+K+ +FI+T+ G+GY + + Sbjct: 181 WGEEVASNTIEVHVSHLRKKMPDNFIKTIRGVGYCISK 218 >UniRef50_Q97LA9 Response regulator (CheY-like receiver domain and HTH DNA binding domain) n=1 Tax=Clostridium acetobutylicum RepID=Q97LA9_CLOAB Length = 221 Score = 298 bits (766), Expect = 7e-80, Method: Composition-based stats. Identities = 86/220 (39%), Positives = 125/220 (56%), Gaps = 4/220 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M +L++EDD + +K GL + + D G G L YDAVILD+ LP MDG Sbjct: 1 MHLLIVEDDEELSILLKKGLKQYNCTCDISHDGEDGLYNLEINSYDAVILDINLPKMDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + R+ R KG PVL+LTAR +RV GL GADDYL KPF E+ ARL AL+RR Sbjct: 61 TVCRKMRGKGISTPVLMLTARTDTDDRVLGLDSGADDYLGKPFEFKELRARLHALIRRNY 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + SNE++ ++ +D + + + +TL +E+ +LELL N ++S + I E ++ Sbjct: 121 NKPSNEIKIKDLNIDTKAKSVKVGEKLITLTAREYDILELLCYNYPNIVSAEEIIEHVWG 180 Query: 181 WDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 216 ++ SN + VH+ +LRRK+ G I T+ G GY L Sbjct: 181 DNDNQFSNVIRVHIANLRRKIKCSGGETLIETLKGKGYRL 220 >UniRef50_C0ZDC3 Two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZDC3_BREBN Length = 231 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 78/220 (35%), Positives = 126/220 (57%), Gaps = 5/220 (2%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 +LL+ED+ + ++ L GFS D G G E + YD ++LD+ LP + G ++ Sbjct: 13 LLLVEDEHNLARYLQLELENEGFSTDIEYDGLSGLEKALTIEYDLILLDVMLPELSGIEL 72 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQ 122 R RE P++++TAR + + V GL GA+DYL KPFA+ E+ AR+ L+R+ + Sbjct: 73 CRRIRETKD-VPIIMITARGEVPDIVTGLDSGANDYLAKPFAIEELFARIRVLLRQRESK 131 Query: 123 ASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTWD 182 A+ E+ G + + P R L E + L P+EF LL +++N + +SR+ I ++ +D Sbjct: 132 ANQEIVVGRLRIQPNARRVFLDEEEIMLTPREFDLLYYMVQNKEQAVSREQILTAVWGFD 191 Query: 183 EEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYTLGE 218 +N V+V++ +LR K+ SD I TV GIGYTL + Sbjct: 192 FMGNTNIVDVYIRYLRNKIESDPSVKLIHTVRGIGYTLRD 231 >UniRef50_C6CH89 Two component transcriptional regulator, winged helix family n=2 Tax=Dickeya RepID=C6CH89_DICZE Length = 232 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 91/216 (42%), Positives = 141/216 (65%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M++L++EDD L+ +G+ + G+ D + ++ + SA Y V+LDL LP DG Sbjct: 1 MKLLIVEDDALLQEGLLQAMRNEGYVCDCASTAKEADALIASAHYSLVVLDLGLPDEDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L WR ++PVLILTARD + +RV GL +GADDY+ KPFAL E AR+ AL+RR Sbjct: 61 TLLGRWRRNHYQQPVLILTARDTVDDRVTGLDVGADDYMIKPFALSEFQARVRALIRRHQ 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G + + +R N+ LD + L +P+ L PKEFA+L L+ AG + R+++ + LY+ Sbjct: 121 GSSDSWIRVDNITLDLNNQQVMLDDKPIVLTPKEFAILSRLILKAGSQVHREVLHQDLYS 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTL 216 WD++ +SN++EVH+H+LR+K+G + I+T+ G GY L Sbjct: 181 WDDDPSSNSLEVHIHNLRQKIGKNRIKTLRGFGYLL 216 >UniRef50_B1ZS16 Two component transcriptional regulator, winged helix family n=3 Tax=Verrucomicrobia RepID=B1ZS16_OPITP Length = 265 Score = 297 bits (763), Expect = 1e-79, Method: Composition-based stats. Identities = 94/221 (42%), Positives = 141/221 (63%), Gaps = 4/221 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL++ED+ +G ++ L++ ++ + ++ L + +DAV+LDL LP DG Sbjct: 45 MKILVVEDERRVGQFVEKALTEQNYTARLVRTCAEARDVLAESTFDAVVLDLGLPDGDGL 104 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 D+LREWR G EPVL+L+ARDA+ +RV GL +GADDYL KPF++ EV AR+ +L+RR Sbjct: 105 DLLREWRASGFNEPVLVLSARDAVGDRVRGLNMGADDYLPKPFSVDEVVARVRSLLRRHA 164 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G + L HG V +D R T AG P+ L +E+ALLEL ++N RVL+R LI EK++ Sbjct: 165 GVKTTVLTHGPVRMDLLGRSVTCAGRPVELTSREYALLELFLQNPRRVLTRTLIAEKVWE 224 Query: 181 WDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYTLG 217 ++ +N ++V+V LR+KL I+T+ G GY L Sbjct: 225 ASYDLETNLIDVYVRRLRQKLEAPGQPPLIKTIRGTGYQLS 265 >UniRef50_Q44006 Transcriptional activator protein czcR n=330 Tax=cellular organisms RepID=CZCR_RALME Length = 225 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 87/223 (39%), Positives = 125/223 (56%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L++ED+ + ++ GLS+ GF VD G G YD +ILD+ LPGMDG Sbjct: 1 MRVLVVEDEPRTAEYLQKGLSESGFVVDIANNGGDGLHMAEETDYDVIILDVMLPGMDGW 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +++ R K PVL LTA D +A+RV G LGADDYL KPFA E+ AR+ +R++ Sbjct: 61 TVIKSIRSKS-ETPVLFLTALDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLRQST 119 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + S LR ++ +D R + L +EF+LL LLMR G VLSR I +++ Sbjct: 120 SKESERLRIADLDIDVLGRRVFRGTTRIELTNQEFSLLHLLMRRRGEVLSRTTIASQVWG 179 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTLGEK 219 + + +N V+V + LR K+ F I TV G+GY L + Sbjct: 180 VNFDTDTNVVDVAIRRLRSKVDDPFDQKLIHTVRGMGYVLDPE 222 >UniRef50_A5EYW4 Transcriptional regulator n=31 Tax=Bacteria RepID=A5EYW4_VIBC3 Length = 224 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 84/223 (37%), Positives = 126/223 (56%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILLIEDD I I+ GL G + G+ G E + S+ D +ILD LP +DG Sbjct: 1 MRILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT- 119 + ++ R G + +L+L+A + ER++GLR GADDYL KPF E+ AR+EAL RR Sbjct: 61 TLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120 Query: 120 NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 SN+LR ++ L A +P+ L KE ++LEL +R G + SR+ I ++ Sbjct: 121 QTHTSNKLRFADLELCLSTMRVYRAEQPIELTAKEISILELFLRKPGHIFSRERILANVW 180 Query: 180 TWDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYTLGE 218 ++ +N V+V++ LR+K+ I+T G+GY LG+ Sbjct: 181 GIHQDPLTNVVDVYMRRLRKKIDMPFAQPLIQTKRGMGYYLGD 223 >UniRef50_B8G869 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G869_CHLAD Length = 245 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 86/220 (39%), Positives = 130/220 (59%), Gaps = 4/220 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +++IED++ I + ++ GL+ G V ++GR + + D VILDL LP +DG Sbjct: 18 HVVVIEDELTIAESLRVGLTYEGMRVTVASEGRSALQIVEEQGADLVILDLMLPDIDGMV 77 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + R R ++ P++ILTAR + ERV+GL+LGADDY+ KPF+ E+ AR+ A+ RR Sbjct: 78 VCRRLRAWSEKLPIIILTARGEVQERVKGLQLGADDYIVKPFSFDELLARVNAIFRRAGI 137 Query: 122 QAS-NELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 L+ + L+ R TL G + L P EFALLE MR+ RV +R+ + +++ Sbjct: 138 SRPVTVLQVAGLSLNLETREVTLHGRAIELTPTEFALLEQFMRHPRRVFTRQTLLSRVWG 197 Query: 181 WDEEVTSNAVEVHVHHLRRKLGS---DFIRTVHGIGYTLG 217 + SN VEVH+ +LR K+G IRTV+G+GYTL Sbjct: 198 FTYVGDSNIVEVHISNLREKIGDHERKLIRTVYGVGYTLR 237 >UniRef50_Q2BR69 Two component Transcriptional regulator, Winged helix family protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BR69_9GAMM Length = 219 Score = 297 bits (761), Expect = 2e-79, Method: Composition-based stats. Identities = 99/219 (45%), Positives = 138/219 (63%), Gaps = 2/219 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M +LL+EDD L+G I+ L + + VDW G + + D +ILDL LP +DG Sbjct: 3 MHVLLVEDDPLLGQVIEIKLQERQYQVDWIQSGSAVLSTVRNLHPDIIILDLNLPDIDGL 62 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +IL+ R + PVLILTAR A+ ERV GL LGADDYL KPF + E+ ARL A+ RR + Sbjct: 63 EILKRLRAENISTPVLILTARHAVEERVNGLDLGADDYLTKPFEMDELEARLRAVQRRLH 122 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G++ E+ G++ +D R G P+ +EF LL LL+ N GRV++R IE LY Sbjct: 123 GRSKEEITFGDIKIDSAARQVFFKGSPIEASRREFDLLVLLLNNTGRVMTRAKIEATLYA 182 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK 219 ++V SNA+EVH+H+LR+KLG + I TV G+GY + E+ Sbjct: 183 --DDVESNALEVHIHNLRKKLGKELISTVRGVGYYVAER 219 >UniRef50_C1SIE7 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SIE7_9BACT Length = 240 Score = 296 bits (760), Expect = 3e-79, Method: Composition-based stats. Identities = 80/224 (35%), Positives = 134/224 (59%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL+++D++ + D +K+ L K +SVD G G + ++ Y +ILD+ LP MDG Sbjct: 14 MKILIVDDEVQLVDELKSILEKSKYSVDTAVSGDSGLDKIFDNEYSLIILDVMLPVMDGF 73 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 IL RE PVL+LTA+ +++R++GL G+DDYL KPFA+ E+ AR+ AL+RR N Sbjct: 74 CILEAVREASITTPVLMLTAKSDVSDRIKGLDKGSDDYLVKPFAVSELLARVRALLRRDN 133 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + L+ +++L+ G PL L KE+ + E L+ N RV+++ + ++ Sbjct: 134 LDKNPFLKVADIVLNTVSCDVVKDGHPLKLTRKEYMVFEYLLYNKNRVVTKAALAGHVWG 193 Query: 181 WDEEVT--SNAVEVHVHHLRRKLGSD---FIRTVHGIGYTLGEK 219 + + SN ++VH+ +LR+K+G + IRT GIGY + ++ Sbjct: 194 DEFDEFNASNFIDVHIKNLRKKIGDENHLIIRTKRGIGYIINDQ 237 >UniRef50_B0C620 Two component transcriptional regulator, winged helix family n=19 Tax=Bacteria RepID=B0C620_ACAM1 Length = 226 Score = 296 bits (760), Expect = 3e-79, Method: Composition-based stats. Identities = 87/220 (39%), Positives = 131/220 (59%), Gaps = 4/220 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RIL+ ED+ I D +K GL GF+ G Q S +D +ILDL LP DG Sbjct: 3 RILIAEDNPHIVDFLKAGLKAHGFTALVAEDGGQAANLACSDQFDLLILDLGLPRKDGLT 62 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALM--RRT 119 +LRE R +G+ P+++LTARD + + V+ L GA+DY+ KPF E+ AR++ + RR Sbjct: 63 VLREIRGQGELLPIIVLTARDGVDDTVQALERGANDYMTKPFRFEELLARIKVQLRDRRI 122 Query: 120 NGQASNE--LRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEK 177 Q +E L+ GN+ LD R A + + L KEF L E+L+R+ +V+S++ + + Sbjct: 123 GAQPPSETHLQVGNLSLDLLTRQAWVGNRVVELSAKEFILAEVLLRHPMQVMSKEQLLNR 182 Query: 178 LYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLG 217 ++ +D + SN +EV++ HLRRK GS +I TV G+GY L Sbjct: 183 VWGYDYDPGSNIIEVYIRHLRRKFGSQYIETVRGMGYRLN 222 >UniRef50_B8H4H9 Two-component response regulator protein n=9 Tax=Proteobacteria RepID=B8H4H9_CAUCN Length = 242 Score = 296 bits (759), Expect = 4e-79, Method: Composition-based stats. Identities = 94/232 (40%), Positives = 129/232 (55%), Gaps = 15/232 (6%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYS-----APYD---AVILDL 52 M IL++EDD + D ++ GL G+ V G G EA D ++LDL Sbjct: 1 MHILVVEDDTRVADFLERGLKAEGYKVRVARDGVSGLEAARDLDAMLRELDQRGVILLDL 60 Query: 53 TLPGMDGRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARL 112 LP M G ++ + R G PVL+LTA A+ +RV GLR GADDYL KPF+ E+ AR+ Sbjct: 61 MLPKMTGMEVCQTLRASGVLTPVLMLTALGAVDDRVTGLRTGADDYLVKPFSFEELLARI 120 Query: 113 EALMRRTNGQASN---ELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVL 169 EAL+RR+ Q + L+ GNV LD + GE + L +E ALLEL + + GRVL Sbjct: 121 EALLRRSRDQRAPANRTLKAGNVELDRTTMRVSRDGEEVVLTARELALLELFLSSPGRVL 180 Query: 170 SRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYTLG 217 SR+ I ++ DE+ +N V+V+V LR K+ FI TV G+GY L Sbjct: 181 SRERILSNVWGVDEDPLTNVVDVYVRRLRAKIDPPLASSFITTVRGLGYRLE 232 >UniRef50_C0GHG5 Two component transcriptional regulator, winged helix family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHG5_9FIRM Length = 237 Score = 296 bits (759), Expect = 4e-79, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 132/225 (58%), Gaps = 9/225 (4%) Query: 4 LLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDIL 63 L++EDD I + ++ L F+VD G++G E + PY+ +ILDL LP +DG +I Sbjct: 9 LVVEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPYNLIILDLMLPTLDGWEIC 68 Query: 64 REWR--EKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN- 120 R R + P+++LTA++ +++V GL++GADDYL KPF E AR+ AL+RRT Sbjct: 69 RRLRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVHALLRRTTD 128 Query: 121 -GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 Q + L + + P A + + + L PKEF LL +L RNAGR L R+ + E+++ Sbjct: 129 YNQPDDTLYFCTLTIYPQSYQAFIEQKTVDLTPKEFELLLILARNAGRTLKREQLLEQVW 188 Query: 180 TWDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGEK 219 ++ ++ ++ H+ LR+K+ G F++TV G+GY L K Sbjct: 189 GYEYPGSTRTIDEHIKRLRQKISQLEPGYTFVQTVWGVGYKLEVK 233 >UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD5_9FIRM Length = 235 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 80/235 (34%), Positives = 130/235 (55%), Gaps = 18/235 (7%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL+++D+ I + + L K G+ V+ GR + A D V+LD+ LP +DG Sbjct: 1 MQILVVDDEAPIRELLSFNLKKSGYEVEMAADGRTALQRAPEA--DLVLLDIMLPEVDGL 58 Query: 61 DILREWRE--KGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR 118 ++ R+ + + P+++LTA+ +RV GL LGADDY+ KPF++ E+ AR++A++RR Sbjct: 59 EVCRQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLRR 118 Query: 119 T---------NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVL 169 + N + L G + LD A L + + L PKE+ LL+LL+ N GR Sbjct: 119 SASVQKGSRENKEREESLTIGGLRLDFSSYQAWLHDKTIALTPKEYELLKLLVTNPGRAF 178 Query: 170 SRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGS-----DFIRTVHGIGYTLGEK 219 SR + E+++ ++ + V+VH+ HLR KL D I TV G+GY + Sbjct: 179 SRDELLERIWGYEYYGDTRTVDVHIRHLRAKLKDDPTVSDAIETVRGVGYRFARR 233 >UniRef50_Q8A9Y3 Two-component system response regulator n=8 Tax=Bacteroidales RepID=Q8A9Y3_BACTN Length = 245 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 82/221 (37%), Positives = 127/221 (57%), Gaps = 5/221 (2%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +ILL ED++ I I+ GL + G SV G G L P+D VILD+ +P ++G + Sbjct: 24 KILLAEDEVNIASFIERGLKEFGHSVTVCHDGNTGWRILQEEPFDLVILDIIMPKINGLE 83 Query: 62 ILREWREK-GQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + +R+ G + PV++LTA + V+GL GADDYL KPF+ E+ AR++AL+RR Sbjct: 84 LCHLYRQMFGYQAPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRRNK 143 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 +N+L N++LD R A + L KE+ LLE M + G LSR + + ++ Sbjct: 144 ETVTNQLTCDNLVLDCNTRRAKRGDADIDLTVKEYRLLEYFMTHQGVALSRITLLKDVWD 203 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTLG 217 + + +N V+V+V++LR K+ DF I TV G+GY + Sbjct: 204 KNFDTNTNIVDVYVNYLRVKIDRDFDKKLIHTVVGLGYIMN 244 >UniRef50_B2A0K7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B2A0K7_NATTJ Length = 246 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 85/242 (35%), Positives = 135/242 (55%), Gaps = 25/242 (10%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RILL+ED+ I + L K G+ V+ T G + + YD +ILDL LPG+DG + Sbjct: 3 RILLVEDEHHIAKLVNHNLIKEGYEVEHVTHGDEAFNKYFENDYDLIILDLMLPGLDGLE 62 Query: 62 ILREWR-EKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMR-RT 119 + R+ R PV++LTA+ E++ GL +GADDY+ KPF+ E+ AR++A +R RT Sbjct: 63 VCRKIRGNSSLHIPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQLRGRT 122 Query: 120 ------------------NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELL 161 ++ + ++G + + P K A + + L L PKEF LL ++ Sbjct: 123 KELTDEKSQDNSNKIFDQRDKSEDVKKNGPLSIKPEKYRAYIENQELQLTPKEFELLNIM 182 Query: 162 MRNAGRVLSRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLG-----SDFIRTVHGIGYTL 216 + N+G+VL+R+ + EK++ +D + V+VH+ HLR+K+ D + TV GIGY L Sbjct: 183 VTNSGQVLTREKLLEKIWGYDFLGDTRTVDVHIRHLRQKISEAGGPPDLVETVRGIGYRL 242 Query: 217 GE 218 E Sbjct: 243 KE 244 >UniRef50_A1V147 DNA-binding response regulator n=182 Tax=cellular organisms RepID=A1V147_BURMS Length = 283 Score = 295 bits (758), Expect = 5e-79, Method: Composition-based stats. Identities = 112/217 (51%), Positives = 148/217 (68%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 ILL+EDD +I +G++ L G +VDW G AL YD ++LDL LP DG D+ Sbjct: 66 ILLVEDDRMIAEGVRKALKADGCAVDWVQDGDAALTALGGEAYDLLLLDLGLPKRDGIDV 125 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQ 122 LR R +G PVLILTARDA+A+RV+GL GADDYL KPF L E+AAR+ AL+RR +G+ Sbjct: 126 LRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRRQSGR 185 Query: 123 ASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTWD 182 + + +RHG + LDP TL G P+ L +EFALLE L+ G VLS+ +EEK+Y W Sbjct: 186 SESMIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYGWG 245 Query: 183 EEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK 219 EE+ SN VEV++H LR+KLGSD IR V G+GY + ++ Sbjct: 246 EEIGSNTVEVYIHALRKKLGSDLIRNVRGLGYMVVKE 282 >UniRef50_B4WP26 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WP26_9SYNE Length = 676 Score = 295 bits (758), Expect = 6e-79, Method: Composition-based stats. Identities = 83/223 (37%), Positives = 120/223 (53%), Gaps = 6/223 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD + + L+ + VD G G + + S YD +ILD+ LP +DG Sbjct: 1 MRILLVEDDESVAKILHKVLTDEHYIVDVAYTGHIGWQLVSSFNYDLIILDVLLPELDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++ R + PVL +TA D +E++ GL GADDY+ KPF L E+ AR+ AL+RR Sbjct: 61 KFCQQLRAQEYTLPVLFVTALDDSSEKIAGLNAGADDYITKPFELEELLARVRALLRRGK 120 Query: 121 GQAS-NELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 L + L+ R T L+L PKE A+LEL +RN + SR+ I + L+ Sbjct: 121 TSVVLTTLEWEGLRLEVNSRELTYRNNKLSLTPKEHAMLELFLRNPAQAFSREAIIDNLW 180 Query: 180 TWDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLG 217 ++ + V H+ LRRKL +D I TV+G+GY L Sbjct: 181 SYSDAPGEETVTSHMKGLRRKLRTVGAPADLIETVYGVGYRLK 223 Score = 70.5 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 57/124 (45%), Gaps = 2/124 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +IL ++DD + +KT L+ + + + + + L D ++LD+++P G + Sbjct: 540 KILAVDDDSQLLQTLKTRLALENYQIVTLDKPLEFWKTLQDENPDLLLLDISMPQFTGIE 599 Query: 62 ILREWRE--KGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 + + R + P++ TA + + G D+ + K + ++ A LE M+R+ Sbjct: 600 LCQTVRRSPAWRHLPIVFFTAHAEPHLQQAAFKAGGDNLIEKSLSDAQLLAHLEHQMKRS 659 Query: 120 NGQA 123 Q Sbjct: 660 YLQQ 663 >UniRef50_A4AF30 Two component transcriptional regulator, winged helix family protein n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AF30_9ACTN Length = 241 Score = 295 bits (757), Expect = 6e-79, Method: Composition-based stats. Identities = 90/230 (39%), Positives = 127/230 (55%), Gaps = 12/230 (5%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSA-PYDAVILDLTLPGMD- 58 M++L+IEDD+ + D I+ L + G++ G EA YD V+LDL LPG+D Sbjct: 1 MKVLIIEDDVRLADVIRRSLGEAGYATHVAHDAPSGIEAFEVDVTYDLVVLDLMLPGLDV 60 Query: 59 ------GRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARL 112 G + R RE P+L+LTA D + +VEGL GADDYL KPF L+E+ AR+ Sbjct: 61 AGDEPAGMTVCRRIRELDTNVPILMLTALDGMRTKVEGLDAGADDYLVKPFHLVELLARV 120 Query: 113 EALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRK 172 AL+RR+ + L V LD R A G + L KEFA+LE LMRNAGR++S Sbjct: 121 RALLRRSPQAQAPVLTVRGVALDASTRTAERDGRRIQLTAKEFAVLEYLMRNAGRIVSST 180 Query: 173 LIEEKLYTWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTLGE 218 + + + + E SN V+ ++ +LR+KL D I T G GY + + Sbjct: 181 ELIDHAWDSNYEGFSNVVQTYIRYLRQKLTAGGEPDVIETRRGSGYVIEQ 230 >UniRef50_A7HL55 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=A7HL55_FERNB Length = 229 Score = 295 bits (757), Expect = 7e-79, Method: Composition-based stats. Identities = 75/219 (34%), Positives = 126/219 (57%), Gaps = 1/219 (0%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +++++EDD + ++ L +G+SV F G E + + VILD+ LP MDG + Sbjct: 6 KLMVVEDDKKLRRLLEIELEHVGYSVVSFESGLDAIEEFKNENPELVILDIMLPDMDGYE 65 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + + R+ +L+LTA +++ G GADDYL KPF E+ AR++AL+RR N Sbjct: 66 VAQNLRKLKPDVLILMLTALGMKKDKLAGFEAGADDYLTKPFDNEELLARIKALLRRKNI 125 Query: 122 QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTW 181 S ++ G++ + +R G+ + L EF LL L +N RV+S++ I + ++ Sbjct: 126 SISQPIKFGSLEIYENQRTVIYNGKNVDLSKTEFDLLLYLAKNKDRVVSKEEILDAVWGI 185 Query: 182 DEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTL-GEK 219 D + N VEV+V+++R+KL + I+T+ G+GY L GEK Sbjct: 186 DYYGSDNTVEVYVNYIRKKLSPELIKTIRGVGYKLVGEK 224 >UniRef50_A5VEY8 Two component transcriptional regulator, winged helix family n=7 Tax=Proteobacteria RepID=A5VEY8_SPHWW Length = 225 Score = 295 bits (757), Expect = 7e-79, Method: Composition-based stats. Identities = 91/222 (40%), Positives = 132/222 (59%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M +LLIEDD + D + GL + G V+ GR+G + +D ++LD LP +DG Sbjct: 1 MHVLLIEDDPRVADHVGKGLREAGHIVETAADGREGLLRAAAESFDVIVLDRMLPQVDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 IL+ R G PVLIL+A + ER+ GLR G DDYL KPFAL E+ AR+EAL RR Sbjct: 61 KILQTIRATGDATPVLILSALGDVDERIRGLRAGGDDYLPKPFALSELVARVEALGRRGP 120 Query: 121 GQA-SNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 A + ELR G++ +D R T AG + L +EF +LE L+R+AGRV++R ++ E ++ Sbjct: 121 AIAEATELRSGDLAIDLLGRTVTRAGRRIDLTQREFRILEYLVRSAGRVVTRSMLLEHVW 180 Query: 180 TWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTLG 217 ++ + +N ++ HV LR+KL + I TV G GY + Sbjct: 181 DYNFDPQTNIIDQHVSRLRQKLDRGFDTPLIETVRGTGYVVR 222 >UniRef50_A9BQG9 Two component transcriptional regulator, winged helix family n=11 Tax=Proteobacteria RepID=A9BQG9_DELAS Length = 253 Score = 295 bits (757), Expect = 7e-79, Method: Composition-based stats. Identities = 106/227 (46%), Positives = 144/227 (63%), Gaps = 11/227 (4%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL++ED+ I G++ L + ++VD T + AL +DAV+LDL LP DG Sbjct: 22 MRILVVEDNAGIAAGLQANLEQRRYAVDVCTTVAEAWHALEMERFDAVLLDLGLPDGDGS 81 Query: 61 DILREWREK-----------GQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVA 109 +ILR R PVLILTARD + ER+ GL LGADDYL KPF + E+ Sbjct: 82 EILRRLRGPRRPGGDSQALPDPNTPVLILTARDQVRERIAGLDLGADDYLVKPFDIDELE 141 Query: 110 ARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVL 169 ARL A++RR GQA+ +RHG + +DP R G+ + + P+EF++L +L++ GRVL Sbjct: 142 ARLRAMLRRAGGQAAPVIRHGELEVDPAARTVRRDGKLVEMSPREFSVLWVLLQARGRVL 201 Query: 170 SRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTL 216 SR+ IEE LY+W V SNAVEVH+HHLR+KLG+ I T+ G+GY L Sbjct: 202 SRQQIEEHLYSWGTAVESNAVEVHIHHLRKKLGNASIVTMRGVGYFL 248 >UniRef50_A5FEG3 Two-component transcriptional regulator, winged helix family n=4 Tax=Bacteroidetes RepID=A5FEG3_FLAJ1 Length = 224 Score = 295 bits (756), Expect = 8e-79, Method: Composition-based stats. Identities = 71/223 (31%), Positives = 123/223 (55%), Gaps = 6/223 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M++L++ED+ + ++ G ++ V G+ E + + +D V+LD+ LP ++G Sbjct: 1 MKLLIVEDEPNLLSILRKGFAENNNEVSVALDGKTALEMIDNYNFDVVVLDVMLPDINGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +I R R P+L+LTA V GL GADDYL KPF E+ AR+ AL RR + Sbjct: 61 EICRRLRASKNFVPILLLTALGTSENIVTGLNSGADDYLVKPFKFGELDARVNALHRRAH 120 Query: 121 GQAS--NELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 + + + G++ ++ + GE + L KEF LL L +NAGR++SR I + + Sbjct: 121 QETDKIDVITIGDLEINGRAKTVKRDGESIILTAKEFKLLYYLGKNAGRIVSRDQILDNV 180 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTLG 217 + + ++ +N V+V++ +LR+K+ F I T+ G+GY + Sbjct: 181 WDINFDMNTNVVDVYITYLRKKVDKPFKTKLIHTMKGLGYVIK 223 >UniRef50_C6VX71 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteroidetes RepID=C6VX71_DYAFD Length = 232 Score = 295 bits (756), Expect = 9e-79, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 122/226 (53%), Gaps = 8/226 (3%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M++LLIED+ + I+ L+ G + G+ G + + +D +ILDL +P ++G Sbjct: 1 MKLLLIEDEPNVISLIQRSLTANGHEITIAMDGQSGLQMVLQHQFDVIILDLMIPIINGM 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++ R R P+L+LTA V GL GADDY+ KPF L E+ ARL L+RR Sbjct: 61 EVCRRARNAQVTTPILMLTALGTTENIVSGLDSGADDYMTKPFKLAELEARLRTLIRRGK 120 Query: 121 GQA----SNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEE 176 L G+++LD + G+P+ L EF LLE L+ N RVL+R I E Sbjct: 121 EPEKEKNDKVLTLGDLVLDKVTKTVKRGGQPIELTATEFRLLEYLLSNTNRVLNRMEILE 180 Query: 177 KLYTWDEEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYTLGE 218 ++ + + +N V+V++++LR+K+ + I TV G+GY + + Sbjct: 181 NVWDINFNLGTNVVDVYINYLRKKIDKNHDIKLIHTVFGMGYVIRQ 226 >UniRef50_B5D1V8 Putative uncharacterized protein n=2 Tax=Bacteroides RepID=B5D1V8_9BACE Length = 231 Score = 295 bits (756), Expect = 9e-79, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 128/226 (56%), Gaps = 9/226 (3%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 IL+IEDD + D +KTGL + G+ G G S + VI D+ LP +DG ++ Sbjct: 4 ILIIEDDKRVADLLKTGLEENGYHTMVAYDGAMGLRLFQSHSFQLVISDIILPKLDGFEL 63 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQ 122 +E R+ PVL+LTA + ++++G GADDY+ KPF E+ AR++ L++R Sbjct: 64 CKEIRKANPHIPVLMLTALGSTDDKLDGFDAGADDYMVKPFDFRELNARIKVLLKRKAEA 123 Query: 123 -----ASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEK 177 A +L + ++ +D +R G + L PKE+ LL +++NA RV+SR I EK Sbjct: 124 TVSVVAPEKLTYKDLQIDTNRREVMRQGNLIRLSPKEYNLLTYMVQNAERVISRIEIAEK 183 Query: 178 LYTWDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTLGEK 219 ++ + +N ++V++++LR+K+ DF I T GIG+ L ++ Sbjct: 184 VWNTHFDTGTNFIDVYINYLRKKIDKDFETKLIHTKPGIGFILTDE 229 >UniRef50_Q2T1W7 DNA-binding response regulator n=22 Tax=Proteobacteria RepID=Q2T1W7_BURTA Length = 272 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 89/223 (39%), Positives = 123/223 (55%), Gaps = 7/223 (3%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 R+L IEDD + + I L GF+VDW GR G S YD + LD LPG+DG Sbjct: 50 RVLTIEDDEITANEIVGELKSRGFTVDWVANGRDGMARAISDDYDVITLDRMLPGVDGLT 109 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 IL R G R PVL+L+A + ERV GLR G DDYL KPF E+ ARLE L+RR+ Sbjct: 110 ILTTMRSIGVRTPVLMLSALGDVDERVRGLRAGGDDYLTKPFDTEEMTARLEVLLRRSQA 169 Query: 122 QASN---ELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 + L G + LD R G + L P E+ +LE +MR+AG+ ++R ++ E + Sbjct: 170 SPAPFETTLAVGPLTLDLISRKVYRDGAEIALLPTEYRVLEFMMRHAGQTITRMMLFEAV 229 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTLG 217 + + + +N ++VH+ LR+K+ IRTV G GY L Sbjct: 230 WGYHFDPGTNLIDVHMGRLRKKIDPPDATPMIRTVRGAGYILS 272 >UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6VLR9_LACPJ Length = 242 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 74/232 (31%), Positives = 124/232 (53%), Gaps = 17/232 (7%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +IL+++D+ I + L + G+ V T G + + ++LDL LP +DG + Sbjct: 5 KILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQSFTCILLDLMLPKLDGME 64 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + ++ R++ + P++I+TA++ ++V GL LGADDY+ KPF+ EV AR++A++RRT Sbjct: 65 VTKKLRQEKVQTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIRRTTP 124 Query: 122 ------------QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVL 169 + G++ +D K G+ ++L PKEF LL + GRVL Sbjct: 125 DEPVTPPAPMPPANRAVMLVGDLQIDQNKYRVARNGKNISLTPKEFELLVYFVEREGRVL 184 Query: 170 SRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTL 216 SR I ++ +D + V++H+ HLR K+ +D IRTV G GY Sbjct: 185 SRDAILNHVWGYDYASETRIVDIHISHLREKIEADPKQPRLIRTVRGFGYEF 236 >UniRef50_B1YK44 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=B1YK44_EXIS2 Length = 228 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 74/222 (33%), Positives = 124/222 (55%), Gaps = 6/222 (2%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +IL+++D+ + D + + L K + + G++ + + + V+LD+ +P MDG Sbjct: 7 KILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMPEMDGLT 66 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 RE P+++LTAR +R+ GL++GADDY+ KPF+ E+ AR+EA +RR++ Sbjct: 67 ACMRIRE-FSNVPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATLRRSHR 125 Query: 122 ---QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 S L G + LD R ++G+P++L KEF LL L ++N +V SR+ + +++ Sbjct: 126 FTVDQSATLTIGKLELDTESRSVHVSGKPISLTRKEFDLLHLFVQNNDKVFSREQLLDQI 185 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGS--DFIRTVHGIGYTLGE 218 + D V+ H+ LR KLG I+TV GIGY E Sbjct: 186 WGADYIGNLRTVDTHIKTLRLKLGEAGGSIQTVWGIGYKFEE 227 >UniRef50_P94413 Uncharacterized transcriptional regulatory protein yclJ n=77 Tax=Bacilli RepID=YCLJ_BACSU Length = 227 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 76/227 (33%), Positives = 125/227 (55%), Gaps = 10/227 (4%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL+IED++ + + K GF ++ G +G + +D +ILD+ LP MDG Sbjct: 1 MKILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGV 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 I R+ RE P+++LTA+D +++V G +GADDY+ KPF+ + + AR++A++RR Sbjct: 61 TICRKIRETS-TVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYK 119 Query: 121 GQASNELRHGNVM-----LDPGKRIATLAGEPLT-LKPKEFALLELLMRNAGRVLSRKLI 174 + + ++ R L GEP+ L PKEF LL L++N +V SR+ + Sbjct: 120 ATGKAVIDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQL 179 Query: 175 EEKLYTWDEEVTSNAVEVHVHHLRRKL---GSDFIRTVHGIGYTLGE 218 E+++ + V+VH+ LR+KL F+ TV G+GY E Sbjct: 180 LEQVWGYQFYGDERTVDVHIKRLRKKLASEDKPFLYTVWGVGYKFDE 226 >UniRef50_A9BP99 Two component transcriptional regulator, winged helix family n=60 Tax=Proteobacteria RepID=A9BP99_DELAS Length = 262 Score = 294 bits (754), Expect = 1e-78, Method: Composition-based stats. Identities = 92/224 (41%), Positives = 134/224 (59%), Gaps = 6/224 (2%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLP-GMDGR 60 R L+IEDD L I GL + G V + G QG +D +ILD LP G DG Sbjct: 31 RYLIIEDDALNARYIAEGLRQQGAQVAVCSDGVQGIAMAVGESWDVIILDRMLPNGFDGL 90 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 IL+ R G++ PVL+L+A A ERV GL+ G DDYL KPFA E++ARLEAL+RR Sbjct: 91 QILQTLRSMGKQTPVLVLSALSATDERVRGLKAGCDDYLTKPFAFSELSARLEALVRRAQ 150 Query: 121 GQAS-NELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 A E+R ++ L+ R A AG+PL L+P+EF LL LM++A ++++R ++ E ++ Sbjct: 151 IPAPAREMRLADLRLNLLTRSAERAGQPLALQPREFRLLAFLMQHAHQIVTRTMLLESVW 210 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTLGEK 219 + + +N ++VH+ LR K+ F I TV G+GY+L ++ Sbjct: 211 DYRFDPQTNVIDVHISRLRGKVDKGFEPALIHTVRGVGYSLSDR 254 >UniRef50_C0YVQ4 Response regulator n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YVQ4_9FLAO Length = 224 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 127/224 (56%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M ILL+EDD I + + GLS+ G+++ G + +E L++ +D +++D+ LPG+DG Sbjct: 1 MNILLVEDDQRISNFLIKGLSEAGYNITLADSGEKARELLHTYDFDIILMDIMLPGLDGM 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR-- 118 + + R KG P+L+L+A ++ ++++ L +GADDYL KPF E+ +R++AL RR Sbjct: 61 QLTQIIRFKGNYTPILVLSALNSPDDKIKMLDMGADDYLSKPFHFEELISRIKALTRRNK 120 Query: 119 -TNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEK 177 + + L GN+ +D T + + P E+ L LM N +VLSR I Sbjct: 121 LSYKKEDQYLSCGNITIDTDLHKVTQNDKEIEFSPTEYKLFTFLMENKNKVLSRTQILHN 180 Query: 178 LYTWDEEVTSNAVEVHVHHLRRKLGS---DFIRTVHGIGYTLGE 218 ++ D + T+N V+V++ ++R K+ I TV G GY + + Sbjct: 181 VWGIDFDNTTNVVDVYISYIRNKIDETEQKIIHTVKGTGYLIKD 224 >UniRef50_A7GKH0 Two component transcriptional regulator, winged helix family n=68 Tax=Firmicutes RepID=A7GKH0_BACCN Length = 238 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 79/232 (34%), Positives = 126/232 (54%), Gaps = 14/232 (6%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 +R+L+ +D+ I D +K L + ++VD G + + Y+ VILDL +P +DG Sbjct: 4 IRVLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLMMPKIDGI 63 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR-- 118 ++ R R P+L+LTA+D +++ GL +GADDY+ KPF++ EV AR++ALMRR Sbjct: 64 EVCRRLR-NNTNIPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKALMRRFL 122 Query: 119 -----TNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKL 173 N Q L + +D K I T+ + ++L KE LL+ N +V ++ Sbjct: 123 VLGSNANTQEKTILTFKGLTIDISKYIVTVGDKEISLTGKELELLKFFASNPEQVFTKTQ 182 Query: 174 IEEKLYTWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTL-GEK 219 + ++ + N V VH+ LR+K+ +D FI+TV GIGY GEK Sbjct: 183 LFRNVWDSNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGYKFVGEK 234 >UniRef50_B1VIL1 Two-component system response regulator n=3 Tax=Corynebacterium RepID=B1VIL1_CORU7 Length = 256 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 87/223 (39%), Positives = 127/223 (56%), Gaps = 6/223 (2%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 ++L+++D+ I D IK L GF V+ G+ E + DA ILD+ +PGMDG Sbjct: 31 KVLVVDDEDNISDLIKVSLKFQGFDVETADNGQTALEIAETYRPDAFILDVMMPGMDGFT 90 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT-- 119 +L + RE G P L LTA+D + +R+ GL +GADDY+ KPF+L EV RL ++RR Sbjct: 91 LLNKLREAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVAK 150 Query: 120 -NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 + + S+ + + ++ LD T AGE + L P EF LL LM NA VLS+ I + + Sbjct: 151 DDSEESSLITYEDITLDDDMHEVTKAGEVVDLSPTEFQLLRYLMVNAEVVLSKSKILDHV 210 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLG---SDFIRTVHGIGYTLGE 218 + +D N VE +V +LRRK+ I TV G+GY L + Sbjct: 211 WNYDFGGDGNVVESYVSYLRRKIDTKEPRLIHTVRGVGYVLRK 253 >UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KL69_9FIRM Length = 230 Score = 293 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 127/226 (56%), Gaps = 10/226 (4%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RI ++ED+ I ++ L GF + G + E + +D V+LD+ LPGMDG Sbjct: 6 RIFIVEDERRIARFLQIELEHEGFETEIEENGTRAYERIMQGNFDLVLLDVMLPGMDGMT 65 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT-- 119 I + RE P+++LTA+D + ++V GL +GADDY+ KPFA+ E+ AR+ +R+ Sbjct: 66 ICKRVREVS-SLPIIMLTAKDEVEDKVAGLDIGADDYMTKPFAIEELMARIRNALRKHVP 124 Query: 120 ---NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEE 176 L+ N+++ P + + GE + L KE++LLE +MRN VL+R I E Sbjct: 125 DNGGVPLEERLQVKNLVMYPKRYEVEVDGETVHLTKKEYSLLEYMMRNKRTVLTRDQILE 184 Query: 177 KLYTWDEEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTLGE 218 K++ +D +N V+V++ +LR KL +I TV G+GY + E Sbjct: 185 KVWGYDYSGDTNVVDVYIRYLRAKLDDRFHEKYIYTVRGVGYAVKE 230 >UniRef50_C9Z8Q7 Putative two-component response regulator n=1 Tax=Streptomyces scabiei 87.22 RepID=C9Z8Q7_STRSW Length = 251 Score = 293 bits (752), Expect = 2e-78, Method: Composition-based stats. Identities = 88/222 (39%), Positives = 127/222 (57%), Gaps = 8/222 (3%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 R+L+++D+ I + L +G+ V GRQ +A+ D ++LD+ LP + G + Sbjct: 28 RLLVVDDEEGIRSMLTMALEFLGYQVTAAATGRQALQAVTRHDPDLILLDVNLPDLGGFE 87 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + R R++G PVL LT + +RV GL +G DD++ KPF L EVAAR+ AL+RR+ G Sbjct: 88 VCRTLRDRGNAVPVLFLTGLGGVDDRVRGLDMGGDDFVTKPFELKEVAARVRALLRRSGG 147 Query: 122 QAS----NELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEK 177 N LR G + LD A P+ L EFALL LM N GRVLSR I+E+ Sbjct: 148 GRPAPDRNRLRAGAIQLDADAHQVWAADRPVDLTTTEFALLRYLMENPGRVLSRGQIQER 207 Query: 178 LYTWDEEVTSNAVEVHVHHLRRKLGSD---FIRTVHGIGYTL 216 ++ +E S V+ ++++LRRKLG IRTV G+GY L Sbjct: 208 VWNHRDEG-SGVVDTYIYYLRRKLGEPGQSLIRTVRGVGYQL 248 >UniRef50_D1VF89 Two component transcriptional regulator, winged helix family n=1 Tax=Frankia sp. EuI1c RepID=D1VF89_9ACTO Length = 306 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 114/224 (50%), Gaps = 8/224 (3%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 R+L+++D+ I D + L GF V+ G+ + P D ++LD+ L +DG Sbjct: 80 RVLVVDDEEAITDLVAMALRYEGFEVETVRSGQAALTRVALDPPDLLVLDVMLGDIDGFA 139 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + R G P L LTARD ++V GL LG DDY+ KPF++ E+ AR+ A++RR Sbjct: 140 VCERLRGAGHGVPTLFLTARDTTQDKVRGLTLGGDDYVTKPFSVSELVARVRAILRRAGS 199 Query: 122 QA-----SNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEE 176 LR ++ LDP R AG + L E+ LL+ L+ NA VL+R + + Sbjct: 200 PVTGDGHPAPLRFADLELDPRTREVRRAGRLVELTATEYRLLQFLLANARAVLTRAQLLD 259 Query: 177 KLYTWDEEVTSNAVEVHVHHLRRKLG---SDFIRTVHGIGYTLG 217 ++ D +E ++ +LRRK+ I TV G+GY L Sbjct: 260 HVWGHDFSGEGGVLETYISYLRRKVDNVEPPLIHTVRGVGYVLR 303 >UniRef50_UPI0001C16C1D manR (Two component Transcriptional regulator, Winged helix family) n=2 Tax=Nostocaceae RepID=UPI0001C16C1D Length = 268 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 82/224 (36%), Positives = 127/224 (56%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+ILL++D++ + D + L++ G+ VD G+ G E + YD +ILD LP G Sbjct: 33 MKILLVDDEVELTDPLGRILTREGYIVDITYNGKSGSELAQTRTYDLLILDWMLPEKTGL 92 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +I +E R +G+ PVL LTA+D L +RV+GL G DDYL KPF L E+ AR+ AL+RR++ Sbjct: 93 EICQELRRQGKNIPVLFLTAKDTLDDRVQGLDAGGDDYLVKPFELRELLARVRALLRRSS 152 Query: 121 GQA---SNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEK 177 + + +L G++ LD ++A G + L KE LL+ M N ++L+ I + Sbjct: 153 VDSYTITGKLAVGDLELDMENQVAHRQGRIIELSEKESQLLKYFMENPEQLLTHGQIMQH 212 Query: 178 LYTWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTLG 217 L+ ++ SN + + LRRK+ S I TV+G GY Sbjct: 213 LWKGEKPPESNVIAALIRLLRRKIELGGESMLIHTVYGKGYRFS 256 >UniRef50_Q6AQP4 Probable two-component system response regulator (Pho family) n=1 Tax=Desulfotalea psychrophila RepID=Q6AQP4_DESPS Length = 224 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 86/222 (38%), Positives = 130/222 (58%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M++LLIEDD+ I D I+ GL + GF+VD GR+G Y A I+D+ LP DG Sbjct: 1 MKLLLIEDDLTIADLIQKGLEEAGFAVDSCHNGREGLSHALKGAYSAAIIDIMLPERDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 I+ E R G+ PVLIL+A+ ++ +R++GL+ G DDY+ KPF+ E+ R++AL+RR Sbjct: 61 SIIEEMRAAGKETPVLILSAKQSVDDRIQGLQRGGDDYMIKPFSFGELLVRVQALIRRDQ 120 Query: 121 GQASNE-LRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 + L G + +D ++ G + L KE+ALL + NAG LS+ I EK+Y Sbjct: 121 KHSPQTRLSIGPLEMDLLRQQVCRDGGQIELPAKEYALLLYMAENAGTALSKTSILEKVY 180 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTLG 217 ++ + +N V+V V LR K+ F I+T+ G+GY L Sbjct: 181 GYNFDPQTNVVDVLVCRLRAKIDKGFGQQLIQTIRGVGYVLR 222 >UniRef50_A9HHL1 Probable two-component response regulator transcription regulator protein n=1 Tax=Roseobacter litoralis Och 149 RepID=A9HHL1_9RHOB Length = 223 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 88/223 (39%), Positives = 132/223 (59%), Gaps = 6/223 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M ILLIED+ + D ++ GL+ G+SVD G G E YD V+LDL LPG+ G+ Sbjct: 1 MNILLIEDEARVADFVRRGLAAEGWSVDHAANGEDGLELAAQNNYDVVLLDLMLPGIQGQ 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + R+ R + + P+++LTA D E+VEGL++GADDYL KPF E+ AR+EAL RR Sbjct: 61 GVCRKLRARKSKTPIMMLTALDGSEEKVEGLKIGADDYLPKPFDFDELVARIEALHRRAT 120 Query: 121 GQASNE----LRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEE 176 G ++ + +G + D + +P+ L KE LL+LL+ + GRVLSR+ I Sbjct: 121 GYTADVSDTIITNGAITFDRASLEVNVEKKPIELTKKERDLLQLLLTSNGRVLSRERILN 180 Query: 177 KLYTWDEEVTSNAVEVHVHHLRRKLGSD--FIRTVHGIGYTLG 217 ++ + + +N V+V+V LRRKLG + I T+ +GY + Sbjct: 181 TVWGLNADPLTNVVDVYVGRLRRKLGQEGQRIVTLRNVGYRMA 223 >UniRef50_A0YP32 Two-component response regulator n=1 Tax=Lyngbya sp. PCC 8106 RepID=A0YP32_9CYAN Length = 824 Score = 293 bits (751), Expect = 3e-78, Method: Composition-based stats. Identities = 81/221 (36%), Positives = 126/221 (57%), Gaps = 4/221 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR L+IE+D IK L + G+ VD G QG + + YD ++++ LP ++G Sbjct: 1 MRFLVIENDAAQAHQIKKALIEQGYIVDVVIDGEQGWAYVEAFTYDLLLVNAHLPKLNGV 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 D+ + RE+G P+L+LT +++ + V L G DD+L KPF+ E+ AR+ AL+R Sbjct: 61 DLCQRIREQGYSVPILLLTVQNSSIDHVACLEAGIDDHLIKPFSPRELFARIRALLRSPR 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + L+ ++ LDP R T PL+L PKE++LLEL +RN RVL++ I E L++ Sbjct: 121 QANAPLLKWNSLHLDPISREVTYQQHPLSLSPKEYSLLELFLRNPKRVLTQTAILEHLWS 180 Query: 181 WDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTLG 217 ++ + + V H+ LRRKL I TV+G+GY L Sbjct: 181 FESQPNEHTVRAHIKRLRRKLKTVNADKIIETVYGVGYRLK 221 Score = 95.6 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 8/115 (6%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 IL ++DD + + + L G V R E L + +ILDL +P +G ++ Sbjct: 530 ILAVDDDPVTLNRLLELLPSYGLEVTPLDDPRLFWETLEKTAPELLILDLEMPFFNGVEL 589 Query: 63 LREWR--EKGQREPVLILTARDA---LAERVEGLRLGADDYLCKPFALIEVAARL 112 + R P+L L+AR + + + GADDY+ KPFA E+ R+ Sbjct: 590 CQTVRTDRSWNALPILFLSARKEPQTIQDI---YQAGADDYISKPFAEAELITRI 641 Score = 73.2 bits (180), Expect = 5e-12, Method: Composition-based stats. Identities = 44/162 (27%), Positives = 76/162 (46%), Gaps = 20/162 (12%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPG-MD-G 59 R+L+I+DD+ + + ++ +D TQ + + L P D V+LDL P D G Sbjct: 404 RVLVIDDDLELTEQLQRAAINWNIQLDVITQLEKARLILQETPPDLVLLDLVFPDHQDGG 463 Query: 60 RDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 +L E + K PVL+ T RD +++R RLG + +L K + +V ++ +++ T Sbjct: 464 FVLLEELQHKFSELPVLVWTVRDDMSDRATVARLGGNAFLSKSASCDQVLTTIKDILQST 523 Query: 120 NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELL 161 ++ L + +P+TL LLELL Sbjct: 524 PTASTQILA--------------VDDDPVTLNR----LLELL 547 >UniRef50_C7IFX1 Two component transcriptional regulator, winged helix family n=5 Tax=Clostridiales RepID=C7IFX1_9CLOT Length = 217 Score = 293 bits (751), Expect = 3e-78, Method: Composition-based stats. Identities = 77/216 (35%), Positives = 129/216 (59%), Gaps = 6/216 (2%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 IL++ED++ I + +K L +G + G + + YD +ILD+ LPG+DG ++ Sbjct: 4 ILIVEDEVAINELVKRNLQLVGHQCNSVFDGNAAVQEIQCRSYDLIILDIMLPGLDGFEV 63 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQ 122 + E+ + P + L+A++++ +R++G +GADDYL KPF ++E+ AR+EA++RRT Sbjct: 64 I----EQANKTPTIFLSAKNSMPDRIKGFSMGADDYLTKPFEMLELLARVEAVLRRTQRT 119 Query: 123 ASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTWD 182 AS GNV +D G+ + PKE+ LLE+L+ N LSR+ + E ++ +D Sbjct: 120 AS-CFEAGNVKIDFSSHQVFHNGQSVECTPKEYELLEVLVNNRNIALSRERLLELVWGYD 178 Query: 183 EEVTSNAVEVHVHHLRRKLG-SDFIRTVHGIGYTLG 217 E + V+VH+ LR+KL D I+TV+ +GY L Sbjct: 179 FEGDTRTVDVHIQKLRKKLEWEDRIKTVYKLGYRLE 214 >UniRef50_B5JI66 Response regulator receiver domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JI66_9BACT Length = 224 Score = 293 bits (751), Expect = 3e-78, Method: Composition-based stats. Identities = 79/222 (35%), Positives = 129/222 (58%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M++L+ ED + + + GL + G++VD G + YDA I D+ +PG DG Sbjct: 1 MKVLVAEDQTKVANFLAKGLGEAGYTVDLAKDGDEASWLAELHEYDAWIFDIMMPGRDGV 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++R+ R G+R P ++LTAR+ + +RV+GL GADDYL KPF+L E+ ARL A++RR Sbjct: 61 SLIRQLRRNGKRTPTILLTARNRVEDRVQGLDAGADDYLAKPFSLTELLARLRAILRRQR 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + +N + ++ LD A ++L +EF+LLELLM + R +S+ I EK++ Sbjct: 121 PEMNNLVSVSDLKLDLVSHTAWRGQREISLTNREFSLLELLMLASPRPVSKSAITEKVWD 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYTLGE 218 + +N V+V++ +LR K+ I+T GIGY + + Sbjct: 181 QSYDAGTNIVQVYIKYLREKIDQEGEPPLIQTARGIGYAIRD 222 >UniRef50_Q0ASG1 Two component transcriptional regulator, winged helix family n=15 Tax=Proteobacteria RepID=Q0ASG1_MARMM Length = 229 Score = 293 bits (751), Expect = 4e-78, Method: Composition-based stats. Identities = 75/225 (33%), Positives = 119/225 (52%), Gaps = 9/225 (4%) Query: 1 MR--ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMD 58 M+ +L++ED+ + ++ L K G+SV G D V++D LP + Sbjct: 1 MKAHVLVVEDEDALATLLQYNLEKEGYSVAVARDGEDALMQAEETTPDLVMVDWMLPKVS 60 Query: 59 GRDILREWR--EKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALM 116 G ++ R R ++ P+++LTAR +RV GL GADDY+ KPF++ E+ AR+ A++ Sbjct: 61 GIEVCRRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAVL 120 Query: 117 RR-TNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIE 175 RR G A + + G++ +D A + L P EF LL+ LM++ GRV SR+ + Sbjct: 121 RRIRPGLAEDVIEAGDITMDRVAHRVKRADREIHLGPTEFRLLDYLMQHPGRVFSREQLL 180 Query: 176 EKLYTWDEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216 + ++ D V + V+VHV LR+ K D IRTV GY Sbjct: 181 DAVWGSDVYVEARTVDVHVGRLRKALNNKEERDPIRTVRSAGYAF 225 >UniRef50_A9H3V0 Two component Transcriptional regulator n=96 Tax=Proteobacteria RepID=A9H3V0_GLUDA Length = 258 Score = 293 bits (751), Expect = 4e-78, Method: Composition-based stats. Identities = 88/220 (40%), Positives = 125/220 (56%), Gaps = 4/220 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 R+LL+EDD I + L GF V G G A S +D +I+D LP MDG Sbjct: 36 RVLLVEDDGKIAQEVAEELESRGFRVSRAETGPDGLSAGISGLFDVMIVDRMLPEMDGLT 95 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 ++ R + PVL+L+A A+ +RV GL+ G DDYL KPFA+ E+AAR+EALMRR N Sbjct: 96 LIESLRGRQVSTPVLVLSALSAVDDRVSGLKAGGDDYLTKPFAMEELAARIEALMRRPNN 155 Query: 122 QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTW 181 L G + +D +R T GEP+ L P+EF LLE LMR +VL+R ++ E ++ + Sbjct: 156 TRETMLHVGPLSMDLIERTVTRDGEPIDLLPREFRLLEYLMRRPNQVLTRTMLLEDVWNY 215 Query: 182 DEEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTLG 217 +N V+VH+ LRRK+ I+++ G G+ L Sbjct: 216 RFIPQTNLVDVHIGKLRRKIDDPGAQPLIQSIRGTGFMLR 255 >UniRef50_C1ZD82 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZD82_PLALI Length = 235 Score = 292 bits (750), Expect = 4e-78, Method: Composition-based stats. Identities = 82/220 (37%), Positives = 126/220 (57%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR L++ED + ++ L G++VD G G YD ++LD LP + G Sbjct: 1 MRALIVEDQPDLLFALRGMLEDEGYAVDTAADGESGLHRALVWEYDVIVLDWMLPRLSGF 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 D+L++ R K PVL+LTARD +A+RV+GL GADDYL KPF E+ ARL AL+RR Sbjct: 61 DLLKQLRTKK-STPVLMLTARDGVADRVQGLDQGADDYLVKPFDRGELLARLRALIRRAA 119 Query: 121 GQASNELRHG-NVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 G++ + L G V ++ R + L +E+++ E L + GRV+ R + + ++ Sbjct: 120 GESESLLELGQGVTINLIHRKVFRDDVEIVLTAREYSIFEYLALHRGRVVPRTDLYDHIF 179 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK 219 ++E SN ++VH+ +LRRKLG D I T G+GY + + Sbjct: 180 DENDESLSNLLDVHISNLRRKLGRDVIETRRGLGYIIHSQ 219 >UniRef50_C6QB49 Two component transcriptional regulator, winged helix family n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QB49_9RHIZ Length = 229 Score = 292 bits (750), Expect = 4e-78, Method: Composition-based stats. Identities = 97/216 (44%), Positives = 132/216 (61%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 +RILLIEDD I D + GL++ GF+V+ G G Y A ILDL LP M G Sbjct: 13 IRILLIEDDDEIADRLVAGLARAGFTVERADNGADGYAMGLDDTYAAAILDLGLPQMQGL 72 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 D+L+ WR ++ PVLIL+AR AE+V+GL GADDY+ KPF + EVAARL+AL+RR + Sbjct: 73 DVLKRWRASDRKLPVLILSARGTWAEKVDGLNAGADDYITKPFHIPEVAARLKALIRRAS 132 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G AS L HG + LD GE + L +E +L M GR++S+ + + LY Sbjct: 133 GIASPVLSHGGISLDTTSNRVCQNGESIELTARELKMLTYFMHRIGRIVSQAELVDHLYA 192 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTL 216 ++ SN +EV++ LRRKLG+D I TV G+GY + Sbjct: 193 LEDSRESNTIEVYISRLRRKLGADVITTVRGLGYRM 228 >UniRef50_C8WKQ8 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=C8WKQ8_EGGLE Length = 237 Score = 292 bits (750), Expect = 4e-78, Method: Composition-based stats. Identities = 79/220 (35%), Positives = 122/220 (55%), Gaps = 4/220 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M++L++EDD+ + + L++ G+ D G G YD +ILD+ LP MDG Sbjct: 1 MQVLIVEDDVRLAQALAHILAENGYQTDVVHDGASGLAYAECGDYDVIILDVMLPKMDGF 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++ + R K PVL+LTARDA+ +++ GL GADDY+ KPFA E+ A L AL RR Sbjct: 61 AVVAQLRRKSISVPVLLLTARDAVPDKITGLDSGADDYMTKPFAPAELLAHLRALTRRQG 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 +L G+++L+ + + L KEF+L ++LM NAG+V+S+ ++ K++ Sbjct: 121 EVLFEKLAAGDLVLNLESYDLACGSKSIHLSYKEFSLAKVLMANAGQVVSKDMLIAKVWG 180 Query: 181 WDEEVTSNAVEVHVHHLRRK---LGSD-FIRTVHGIGYTL 216 + N VE +V LR+K LGS I T+ GY Sbjct: 181 VESSAEDNNVEAYVSFLRKKMKFLGSTARIETLRRAGYRF 220 >UniRef50_Q20WN2 Two component transcriptional regulator, winged helix family n=4 Tax=Rhizobiales RepID=Q20WN2_RHOPB Length = 221 Score = 292 bits (750), Expect = 5e-78, Method: Composition-based stats. Identities = 90/217 (41%), Positives = 134/217 (61%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L++EDD I ++ GL G+ V+ G + + Y A++LDL LPGMDG Sbjct: 1 MRVLVVEDDRRIAADLERGLQAAGYVVETVRDGEEAWFRGDTEDYAAIVLDLGLPGMDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L+ WR +R PVLILTAR + AERV+G+ GADDYL KPF + E+ ARL +++RR+ Sbjct: 61 AVLKRWRGNDRRTPVLILTARGSWAERVDGIDAGADDYLPKPFRMEELLARLRSIVRRSA 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 GQA + + G+V LD + + G P+ L P E+ L+ L + GRV+S+ + E +Y Sbjct: 121 GQACSVISVGDVTLDERQMKVDVGGVPVNLSPLEYRLIAFLFLHRGRVVSQAELSENIYG 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLG 217 ++ SNA+EV + +R+KLGS+ I T G GY + Sbjct: 181 NEDAHDSNAIEVLIGRVRKKLGSELIETRRGFGYLVA 217 >UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostridiales RepID=Q67MV1_SYMTH Length = 229 Score = 292 bits (750), Expect = 5e-78, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 131/227 (57%), Gaps = 10/227 (4%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 IL+++D+ + G++ L + GF V + GR+ + +D ++LDL LPG+DG Sbjct: 3 HILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVDGLT 62 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR--- 118 I RE R G P+++LTA+ +++ GL LGADDY+ KPF E+ AR+ A++RR Sbjct: 63 ICREVRAAG-MTPIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRRAEA 121 Query: 119 -TNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEK 177 + + L G+++L P +R A +AG PL L +E+ LLELL R+ G V +R+ + + Sbjct: 122 ASRQDRAGRLVVGDLVLHPRQRRAEVAGRPLELTAREYDLLELLARHPGVVYTRQELLDL 181 Query: 178 LYTWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGEK 219 ++ +D V+VHV +R KL D ++RT G+GY L + Sbjct: 182 VWGYDFAGDERTVDVHVRRIREKLEEDPSRPRYLRTKWGVGYYLEAE 228 >UniRef50_Q3M194 Multi-component transcriptional regulator, winged helix family n=2 Tax=Nostocaceae RepID=Q3M194_ANAVT Length = 725 Score = 292 bits (750), Expect = 5e-78, Method: Composition-based stats. Identities = 78/222 (35%), Positives = 124/222 (55%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M++L++E+D + T L F+VD + R E + YD ++LD+ LP +G Sbjct: 1 MKLLIVENDRDTAAALTTSLVAQQFTVDTASDSRSALELAEATEYDLIVLDVMLPDENGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + R+ R + Q+EP+L+LT + A+R+ G GADDY+ KP+ L E+ AR+ AL+RR + Sbjct: 61 RLCRQLRTQNQQEPILLLTRKVNPADRIAGFEAGADDYITKPYELSELLARIRALLRRGS 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + L G + LDP G+ L L PKE+ LLEL +R+ R+ R+ + +++ + Sbjct: 121 TVLTKVLCWGQLQLDPNNCEVMCQGKGLHLTPKEYKLLELFLRHPRRIFDRRTLLDRICS 180 Query: 181 WDEEVTSNAVEVHVHHLRRK-----LGSDFIRTVHGIGYTLG 217 DE A+ + LRRK L SD I T++G+GY L Sbjct: 181 IDECPGEEAITTQIRGLRRKLQMAGLNSDPIETLYGLGYRLK 222 Score = 103 bits (258), Expect = 5e-21, Method: Composition-based stats. Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 2/113 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 R+L+++DD + ++ L GF V Q + L + D ++LD+ +PG G + Sbjct: 607 RLLIVDDDPALLSILEAQLQPWGFQVTTLADSSQFWQYLEATTPDLLLLDVAMPGFSGIE 666 Query: 62 ILREWRE--KGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARL 112 + + + + R PVL+L+A L GADDY+ KP ++ R+ Sbjct: 667 LCQVVKSDPRWSRLPVLLLSAHADADTLYRALAAGADDYILKPIVEADLIQRI 719 Score = 75.9 bits (187), Expect = 8e-13, Method: Composition-based stats. Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 2/131 (1%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPG--MDGR 60 +LLI+DD + + ++ S ++ T ++ L DA+ILDLT P G Sbjct: 483 VLLIDDDTDLIERMQANASNWSIHLETVTDLTLARQRLQYLTPDAIILDLTFPNTTESGL 542 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L + + + PVL+LT L +RVE RLGA+ +L KP EV + L+ R + Sbjct: 543 TLLAQLKHQFSTIPVLVLTGLGDLTKRVEVTRLGANAFLQKPATPTEVFQAVSQLLHRID 602 Query: 121 GQASNELRHGN 131 + L + Sbjct: 603 TINARLLIVDD 613 >UniRef50_A8LHM5 Two component transcriptional regulator, winged helix family n=11 Tax=Actinobacteria (class) RepID=A8LHM5_FRASN Length = 270 Score = 292 bits (750), Expect = 5e-78, Method: Composition-based stats. Identities = 81/225 (36%), Positives = 118/225 (52%), Gaps = 9/225 (4%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 R+L+++D+ I D ++ L GF V G++ + D +ILD+ LP DG + Sbjct: 22 RVLVVDDEPNIVDLVRMALRFHGFDVVTAATGQEALTRAAADQPDLLILDVMLPDADGFE 81 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + R R G V+ LTARDA +++ GL G DDY+ KPFA+ E+ AR+ A++RRT Sbjct: 82 VCRRLRADGAEVAVVYLTARDAHRDKITGLTYGGDDYITKPFAVEELIARVRAVLRRTRR 141 Query: 122 QASN------ELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIE 175 A L + +V LDP + A +P+ L P EF+LL + N RVLSR I Sbjct: 142 PAPEPSPAPGLLTYADVELDPDAHLVRRADQPVELSPTEFSLLRYFLHNPNRVLSRAQIL 201 Query: 176 EKLYTWDEEVTSNAVEVHVHHLRRKL---GSDFIRTVHGIGYTLG 217 ++ D + V+ +V +LRRKL G I T G GY L Sbjct: 202 AAVWDRDFDGEPTVVDQYVSYLRRKLGQHGPPLIHTQRGFGYALR 246 >UniRef50_Q2RYR0 Response regulator receiver domain protein n=2 Tax=Rhodothermaceae RepID=Q2RYR0_SALRD Length = 247 Score = 292 bits (750), Expect = 5e-78, Method: Composition-based stats. Identities = 86/219 (39%), Positives = 128/219 (58%), Gaps = 5/219 (2%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +LL+ED+ + ++ GL++ G+ V W GR+G + D V+LD+ LP + G + Sbjct: 6 HLLLVEDEPDVASFVQQGLNEEGYEVSWVEAGRRGLDYARQGGIDLVLLDIRLPDLSGLE 65 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + R P+L+LTA DA+ +RV GLR GADDYL KPFA E+ AR+EAL+RR + Sbjct: 66 VCERLRLHRPELPILMLTALDAVEDRVRGLRAGADDYLPKPFAFDELLARIEALLRRVDR 125 Query: 122 QASN-ELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + + G ++LDP R T GE + L P EF LL LM G+ LSR I ++++ Sbjct: 126 PSEPGRVEDGPLVLDPAARTCTFDGEEVDLTPTEFDLLAFLMARHGQALSRDTIHQEVWG 185 Query: 181 WDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYT 215 D + +N ++V+V+++RRKL I TV GIGY Sbjct: 186 HDFDRGTNLIDVYVNYVRRKLDEVGCEAPIETVRGIGYR 224 >UniRef50_Q1AZ24 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZ24_RUBXD Length = 234 Score = 292 bits (749), Expect = 6e-78, Method: Composition-based stats. Identities = 90/231 (38%), Positives = 130/231 (56%), Gaps = 14/231 (6%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALY-SAPYDAVILDLTLPGMDGR 60 R+L++EDD + D ++ LS+ G + G E L S P+D V+LD+ LPGMDG Sbjct: 3 RVLIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVMLPGMDGI 62 Query: 61 DILREWREKGQ---REPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMR 117 + RE RE PV++LTARD V GL +GADDY+ KPF+ ++A+R+ A +R Sbjct: 63 SVCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQLR 122 Query: 118 RT--NGQASNE---LRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRK 172 R N QAS E L + +D +R T GE + L +EF +L LL N GRV SR+ Sbjct: 123 RQRMNAQASPEQRKLEFPGLEIDLLRRRVTARGEQVELTAREFEVLALLASNPGRVYSRE 182 Query: 173 LIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218 I + L+ + + +VH+ HLR+K+ D +I+TV G+GY E Sbjct: 183 QIMDHLWGGEFFGEPRSADVHIQHLRQKIEPDPKNPRYIQTVRGMGYRFAE 233 >UniRef50_C6CWW2 Two component transcriptional regulator, winged helix family n=2 Tax=Paenibacillus RepID=C6CWW2_PAESJ Length = 239 Score = 292 bits (749), Expect = 7e-78, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 127/225 (56%), Gaps = 10/225 (4%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 ++L+IED+ + + L++ G+ G G + +D +ILD+ LPG++G + Sbjct: 4 KVLVIEDEPTLARLLSYNLTQEGYDTTVIDHGATGLQTALQRNFDLIILDIMLPGLNGFE 63 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 IL R+ G + P++ILTAR+A E V+GL+ GADDY+ KPF + E+ AR+ A++RRT Sbjct: 64 ILTRLRQNGVKTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVLRRTQQ 123 Query: 122 QAS-------NELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLI 174 S + G++ + P K L GE + L+PKEF +L L++ G V++R + Sbjct: 124 DDSVPIETSEKVITVGDLSIYPEKYEVILNGETVPLRPKEFEVLLYLVQRPGMVITRDDL 183 Query: 175 EEKLYTWDEEVTSNAVEVHVHHLRRKLG---SDFIRTVHGIGYTL 216 ++ +D V+VHV LR+KL S I ++ G+GY L Sbjct: 184 MNVVWGFDYIGGQRTVDVHVSSLRKKLELGQSVQIESIRGVGYKL 228 >UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=Bacteria RepID=C3WCS3_FUSMR Length = 223 Score = 292 bits (749), Expect = 7e-78, Method: Composition-based stats. Identities = 75/215 (34%), Positives = 127/215 (59%), Gaps = 1/215 (0%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RIL+++D+ I + ++ L K G+ V G +G + Y P+D VILD+ LP DG Sbjct: 8 RILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKLFYEKPFDLVILDVMLPKKDGWS 67 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 ILRE +K PV++LTARD + V G +GADDY+ KPF + AR+++L+R+TN Sbjct: 68 ILREI-KKYTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLRKTNN 126 Query: 122 QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTW 181 + + G+++++ + + + L PKE+ LL L++N LSR+ + +++ + Sbjct: 127 MVESIIEIGDLVINDTSHSVSNSKGEIELAPKEYDLLVYLIKNNKIALSREKLLNEVWGY 186 Query: 182 DEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTL 216 D ++ H+ +LR+K+G + I+T+ GIGY L Sbjct: 187 DFLGDDRTIDTHIKNLRKKIGKNAIKTIRGIGYKL 221 >UniRef50_B3QW38 Two component transcriptional regulator, winged helix family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW38_CHLT3 Length = 239 Score = 292 bits (748), Expect = 7e-78, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 116/230 (50%), Gaps = 12/230 (5%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 ++L+IEDD I + +K LS +G D G G E S YD +ILD+ LP +DG + Sbjct: 5 KVLIIEDDFDIANLVKINLSDIGCDCDIAGDGLSGIEYALSNNYDVIILDMMLPKLDGLE 64 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + + R+ P+L+LT+R ++V L GADDY+ KPF++ E+ AR+ A +RR Sbjct: 65 VCQRLRKNHILVPILMLTSRSEEDDKVTSLNAGADDYITKPFSIRELTARVIAHIRRYRP 124 Query: 122 QASN-------ELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLI 174 + + LD TLA + + + KEF LL L M+N GR SR + Sbjct: 125 EKEPSFINSKKTFLFDGLCLDTENHKVTLASKEIEITAKEFDLLSLFMKNPGRTYSRTEL 184 Query: 175 EEKLYTWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGEK 219 + ++ + V H++ LR K+ + +I TV G+GY + Sbjct: 185 LDLVWGASYSGYEHTVNSHINRLRMKIEENPAKPKYILTVWGVGYKFNNQ 234 >UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actinobacteridae RepID=D2Q9F0_9BIFI Length = 248 Score = 292 bits (748), Expect = 7e-78, Method: Composition-based stats. Identities = 78/231 (33%), Positives = 125/231 (54%), Gaps = 16/231 (6%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 I++++D+ I + + L GF V+ G + E + D ++LD+ LP +DG + Sbjct: 14 IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKTQPDLIVLDVMLPDIDGFTV 73 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQ 122 R R++G PVL LTARD ++V GL +G DDY+ KPF+L EV AR+ A++RRT Q Sbjct: 74 TRRIRQEGIATPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQEQ 133 Query: 123 A--SNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 +R G++ ++ + AG+P+ L P E+ LL LM N GRVLS+ I + ++ Sbjct: 134 VEDDPIIRVGDLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 193 Query: 181 WDEEVTSNAVEVHVHHLRRKLG--------------SDFIRTVHGIGYTLG 217 +D + VE ++ +LR+K+ + I T GIGY + Sbjct: 194 YDWGGDAAIVESYISYLRKKVDGIVVEDADGEEHKVTPLIETKRGIGYMIR 244 >UniRef50_Q12T20 Two component transcriptional regulator, winged helix family n=11 Tax=Gammaproteobacteria RepID=Q12T20_SHEDO Length = 225 Score = 292 bits (748), Expect = 7e-78, Method: Composition-based stats. Identities = 85/223 (38%), Positives = 125/223 (56%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL+IEDD + G + + D + G++G YD ++LD LP +DG Sbjct: 1 MKILIIEDDATTQSYLVEGFAAQNIATDTASDGQEGLHLARHNSYDLIVLDRMLPKLDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L R G PVLIL+A + + ERV+GLR G DDY+ KPFA E+ R+E L +R Sbjct: 61 TLLGALRSSGNSTPVLILSALNHVDERVKGLRAGGDDYMTKPFAFAELLVRVEKLTQRNQ 120 Query: 121 G-QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 G A EL G + ++ R+ TLA L L+PKEF LL+ LM + +V+SR L+ E ++ Sbjct: 121 GIAAPAELVVGQLRMELLTRVVTLAEHELMLQPKEFQLLKYLMEHPNKVISRTLLFEAVW 180 Query: 180 TWDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYTLGE 218 + + +N ++VH+ LRRK + I TV G GY L + Sbjct: 181 DYHFDPRTNVIDVHIAKLRRKFEEIGFPEMIETVRGAGYRLSK 223 >UniRef50_C6CZ95 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ95_PAESJ Length = 238 Score = 292 bits (748), Expect = 8e-78, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 119/224 (53%), Gaps = 9/224 (4%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +IL+++D+ I I+ L G+ V + G E L D ++LDL LP MDG Sbjct: 4 KILVVDDEPSISMLIEFNLKLAGYDVRCVSDGEAVFEMLKPFRPDLIVLDLMLPKMDGIQ 63 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR--- 118 + RE R++ P+++LTA + +++ GL GADDY+ KPF+ E+ +R++A+ RR Sbjct: 64 VCRELRKQSNAVPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIFRRIQT 123 Query: 119 -TNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEK 177 S G + + +R + G + L PKEF LL L ++ G+VLSR+ + Sbjct: 124 LPGQAESTTFDIGRLTVRAEQREVLIDGRTIELTPKEFELLLFLCKHRGKVLSRQQLLHG 183 Query: 178 LYTWDEEVTSNAVEVHVHHLRRKLG-----SDFIRTVHGIGYTL 216 ++ + + V+VH+ HLR K+ ++I TV +GY L Sbjct: 184 VWDYHFLGDTRIVDVHISHLRDKIEQNARTPEYIMTVRNVGYKL 227 >UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candidatus Chloracidobacterium thermophilum RepID=A8DJW5_9BACT Length = 242 Score = 292 bits (748), Expect = 8e-78, Method: Composition-based stats. Identities = 82/224 (36%), Positives = 132/224 (58%), Gaps = 6/224 (2%) Query: 1 MR--ILLIEDDMLIGDGIKTGLSKMG-FSVDWFTQGRQGKEALYSAPYDAVILDLTLPGM 57 M+ I++IEDD I I+ L + G F V T G G + P + ++LD+ LP M Sbjct: 1 MKRSIVIIEDDTDIAQSIRYNLEQEGSFHVTITTTGEAGLRTVLEHPPNLILLDINLPLM 60 Query: 58 DGRDILREWREKGQR--EPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEAL 115 +G +I R R + P+++LTAR +++ GL LGADDY+ KPF++ E+ AR+ A+ Sbjct: 61 NGFEICRRLRREEATAHVPIIMLTARTDETDKIHGLGLGADDYITKPFSVRELMARINAV 120 Query: 116 MRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIE 175 +RRT G S+ G + +D + G+ + L KEFALL+LL ++ GRVL+R+ + Sbjct: 121 LRRTEGTPSSVYDDGTLFIDYNHFVVRCQGQEINLTRKEFALLKLLAQSKGRVLTREYLL 180 Query: 176 EKLYTWDEEVTSNAVEVHVHHLRRKLGSD-FIRTVHGIGYTLGE 218 ++++ D + + ++VH+ +R+KLG D +I T GIGY E Sbjct: 181 DRVWGIDYDGETRTLDVHIRRVRQKLGIDGYIETAVGIGYRFVE 224 >UniRef50_A1HRL8 Two component transcriptional regulator, winged helix family n=2 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRL8_9FIRM Length = 231 Score = 291 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 83/226 (36%), Positives = 128/226 (56%), Gaps = 11/226 (4%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M++L+++DD I + L K G+SV G + + D V+LD+ LP +DG Sbjct: 1 MKVLVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKARQLGPDIVLLDVMLPSLDGW 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + +E R P+++LTARD A+R+ GL LGADDY+ KPF+ EV AR+ A+ RR Sbjct: 61 GVCKEIRRTSD-VPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIFRRLQ 119 Query: 121 GQA-----SNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIE 175 + L+ G+ +LD R T+AG P+ L P E+ LLEL + + G+V SR + Sbjct: 120 PASRRDGGERILKVGDAVLDQNSRSLTIAGTPVELTPTEYKLLELFLAHPGQVFSRLQLI 179 Query: 176 EKLYTWDEEVTSNAVEVHVHHLRRKLG-----SDFIRTVHGIGYTL 216 EK+ + E V+ H+ +LR+KLG +I+T++G+GY L Sbjct: 180 EKVQDYAFEGYERTVDSHIKNLRKKLGASPDEPHYIKTIYGVGYKL 225 >UniRef50_Q2T0V1 DNA-binding response regulator n=139 Tax=cellular organisms RepID=Q2T0V1_BURTA Length = 291 Score = 291 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 99/220 (45%), Positives = 138/220 (62%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL+ EDD ++ DG+ L + G++VD G + AL +D +ILDL LP M G Sbjct: 45 MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQAFDLLILDLGLPRMPGL 104 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 D+LR R + PVLILTA D++ ERV+GL LGADDY+ KPFAL E+ AR+ AL RR Sbjct: 105 DVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 164 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G +RHG++ D RIA L L +E LLE+L++ GR++S++ + + L Sbjct: 165 GGGPTVVRHGSLSFDQVGRIAYANDRVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 224 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSD--FIRTVHGIGYTLGE 218 W EEV++NA+EV+VH LR+K+ I TV G+GY L + Sbjct: 225 WGEEVSNNAIEVYVHRLRKKIEPSGVRITTVRGLGYCLEK 264 >UniRef50_UPI00016C506D two component transcriptional regulator, winged helix family protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C506D Length = 230 Score = 291 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 87/219 (39%), Positives = 126/219 (57%), Gaps = 5/219 (2%) Query: 4 LLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDIL 63 LL+ED + ++ G+ + GF+VD T G + S YD V+LD+ LP +DG +L Sbjct: 2 LLVEDHQPLAKALRQGMEEEGFAVDVATDGEEADVKCRSTAYDVVVLDVMLPKVDGLSLL 61 Query: 64 REWREKGQREPVLILTARDALAERVEGLRLGADDYLCKP-FALIEVAARLEALMRRTNGQ 122 + WR G VL+LTA+ A++V GL GADDYL K L E+ AR+ AL+RR + Q Sbjct: 62 KRWRASGVNTHVLMLTAKSETADKVTGLDTGADDYLSKANLDLEELFARIRALIRRGHQQ 121 Query: 123 ASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTWD 182 LR ++ +D R AG + L P+E+ALLE L + G+V++R +I E LY Sbjct: 122 KDPVLRCYDLEIDTAARTVRRAGRSIHLTPREYALLEFLAFHRGKVVTRSMIWEHLYDEY 181 Query: 183 EEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTLG 217 +E TSN V+V++ +LR K+ +F I T G GY L Sbjct: 182 DENTSNVVDVYIRYLRNKVDKEFDPQLILTRWGEGYMLR 220 >UniRef50_Q3MAE8 Response regulator receiver modulated diguanylate cyclase n=3 Tax=Cyanobacteria RepID=Q3MAE8_ANAVT Length = 684 Score = 291 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 89/222 (40%), Positives = 128/222 (57%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD LIG+ + L+ ++VD+ G +G YD ++LDL LP +DG Sbjct: 1 MRILLVEDDELIGELLVKSLTSQHYTVDFAKDGEEGWNFAELYTYDLILLDLILPKLDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 R+ R G + PVL+LT++D +V GL GADDY+ KPF E+ AR+ AL+RR Sbjct: 61 SFCRQLRASGNQTPVLLLTSQDTSITKVAGLDAGADDYVAKPFDFQELLARIRALLRRGG 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 L N+ LDP G+ L L PKE+ LLEL +RN+ R+ S + ++L++ Sbjct: 121 SALPPLLEWNNLRLDPSTCEVACDGKLLHLTPKEYGLLELFLRNSHRIFSCSALIDQLWS 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGS-----DFIRTVHGIGYTLG 217 ++E T + V H+ LR+KL + D I TV+GIGY L Sbjct: 181 FEEPPTEDTVRSHIKGLRQKLKAAGVVEDPIDTVYGIGYRLK 222 Score = 85.2 bits (211), Expect = 1e-15, Method: Composition-based stats. Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 2/113 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 R+++++DD I ++T LS G V + EA+ A + +IL + +P G + Sbjct: 396 RVMIVDDDPQILTALQTLLSAWGIKVYTLAHSQGFLEAMALAEPELLILKMEMPSTSGIE 455 Query: 62 ILREWREKGQR--EPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARL 112 + + R++ Q P+L LT R R + GADDY+ KP E+ R+ Sbjct: 456 LCQIARQEPQWAGLPILFLTNRHDTLTRQQIFIAGADDYISKPIVEPELIGRI 508 >UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate regulon response regulator OmpR n=3 Tax=Clostridiales RepID=C4Z0U9_EUBE2 Length = 238 Score = 291 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 127/226 (56%), Gaps = 11/226 (4%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 R+L+++D+ +I G+K L + VD G + E + + YD ++LD+ LP +DG Sbjct: 13 RVLVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIMLPKLDGLS 72 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + ++ RE P+++LTA+ +++ GL GADDY+ KPF ++EV AR++A++RR + Sbjct: 73 VCQQIRE-FSNVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRRNSS 131 Query: 122 -----QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEE 176 Q SN ++ G++ +D R +A + + L KEF LLE+L N G+V SR + + Sbjct: 132 ITQKEQKSNVIKAGDMKIDCDSRSLYIADKEINLTAKEFDLLEILAVNPGKVYSRDNLLK 191 Query: 177 KLYTWDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLG 217 ++ D + V+VH+ LR K+ ++ T G+GY Sbjct: 192 AVWGQDYTGDARTVDVHMRRLREKIENNPSEPKYVHTKWGVGYYFN 237 >UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacteria RepID=Q8DLA7_THEEB Length = 256 Score = 291 bits (746), Expect = 1e-77, Method: Composition-based stats. Identities = 86/233 (36%), Positives = 128/233 (54%), Gaps = 18/233 (7%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGK-----EALYSAPYD-----AVILDL 52 IL+IED+ LI + + L + G+ + G + L + +ILD+ Sbjct: 24 ILVIEDEDLIRETVVLALQEEGYHTLVASDGYEALNLIHTYLLRETSPEQGEVCLIILDV 83 Query: 53 TLPGMDGRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARL 112 LPG++G D+ R R +G P+L+++A+ + +RV GL +GADDYL KPF + E+ AR Sbjct: 84 MLPGINGLDLCRLIRRQGCTVPILMISAKGSEIDRVVGLEIGADDYLAKPFGMREMLARC 143 Query: 113 EALMRRTNGQA---SNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVL 169 AL+RRT Q LR ++ L P + ATL GE L L PKE+ LLEL MR+ RV Sbjct: 144 RALLRRTRIQQATLPPVLRFRDLCLYPQECRATLRGEELNLSPKEYKLLELFMRHPRRVW 203 Query: 170 SRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLG 217 R+ + ++++ D S V+VH+ LR K+ +D +I TV G GY G Sbjct: 204 PREQLLDQVWGPDFVGDSKTVDVHIRWLREKIETDPSHPQYILTVRGFGYRFG 256 >UniRef50_Q81I47 Two-component response regulator n=76 Tax=Firmicutes RepID=Q81I47_BACCR Length = 232 Score = 291 bits (746), Expect = 1e-77, Method: Composition-based stats. Identities = 85/224 (37%), Positives = 135/224 (60%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L++ED+ + + I L F VD G G YDA++LD+ +PGMDG Sbjct: 10 MRLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 68 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +++++ R++ PVL LTARD+L +RV+GL G DDY+ KPF E+ AR+ AL+RR+ Sbjct: 69 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 128 Query: 121 G-QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 +R+ + L + + G+ + L K++ LLE L++N+G++L R+ I ++++ Sbjct: 129 SLTTQQTIRYKGIELFGKDKDVQVDGKGMKLSLKQYELLEYLVQNSGKILMREQIFDRVW 188 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTLGEK 219 +D + T VEV+VHHLR+KL I+TV GIGY L E+ Sbjct: 189 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYILKEQ 232 >UniRef50_C6VUR1 Two component transcriptional regulator, winged helix family n=3 Tax=Sphingobacteriales RepID=C6VUR1_DYAFD Length = 226 Score = 291 bits (746), Expect = 1e-77, Method: Composition-based stats. Identities = 77/225 (34%), Positives = 125/225 (55%), Gaps = 6/225 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL++EDD IG + GL+++G+ V+W G + + +D ILD+ LP +DG Sbjct: 1 MKILVVEDDERIGSFLTKGLAEVGYFVEWAQDGAMARTLIQDGSWDLFILDVMLPDIDGF 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + + R K PVLIL+A ++++ L LGADDYL KP E+ +R+ AL RR + Sbjct: 61 QLTQLIRYKKIDTPVLILSALGEADDKIKALDLGADDYLTKPIHFPELLSRINALRRRYD 120 Query: 121 GQ--ASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 N L ++ ++ + AG+ + L KEF L LM N +VL+R I + + Sbjct: 121 MHYSKDNVLVCADLEVNLDTHLVQRAGKEIVLSAKEFRFLVYLMENQNKVLTRSQILQVV 180 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTLGEK 219 ++ + + +N V+V++ +LR K+ DF IRTV G GY + + Sbjct: 181 WSTNMDTYTNVVDVYISYLRNKIDVDFPDKLIRTVKGTGYMIASQ 225 >UniRef50_C6LI81 DNA-binding response regulator DltR n=2 Tax=Clostridiales RepID=C6LI81_9FIRM Length = 248 Score = 290 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 88/224 (39%), Positives = 129/224 (57%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M IL+IED++ + + + L K G+ D + G G E S YD ++LDL LPG+ G Sbjct: 20 MNILIIEDELHLQEALAASLKKEGYQTDCASDGISGLELALSDRYDVILLDLMLPGLGGY 79 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L++ R + V+IL+A+ L +++ GL GADDYL KPF + E+ AR+ A+ RR Sbjct: 80 QVLKQLRREKTESAVIILSAKSELEDKIAGLDFGADDYLTKPFQMKELFARIRAVTRRHG 139 Query: 121 GQASNELRHGNVMLDPGKRIATLA--GEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 +EL ++ L+ + + LTL KEF L+E LMRN +V+SR I EK+ Sbjct: 140 EVVRDELVFQDLYLNIRTFTLSSSATSHTLTLGSKEFQLMEYLMRNPKQVISRSRITEKI 199 Query: 179 YTWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTLGE 218 + +D EV N V+V++ LR+KL IR V GIGYTL E Sbjct: 200 WGYDSEVEYNNVDVYISFLRKKLKHTGAHVEIRAVRGIGYTLQE 243 >UniRef50_Q1LCD6 Two component transcriptional regulator, winged helix family n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LCD6_RALME Length = 225 Score = 290 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 85/221 (38%), Positives = 124/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL++DD + GL + G+ V+ A + +ILD LPG G Sbjct: 1 MRILLVDDDQKAARLLARGLQEEGYDVETAHSVDVA-AAHNCYAFSLLILDWMLPGKSGV 59 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + RE RE+G R P+L+LTARDA+ +R+ GL GADDYL KPF E+ A + AL+RR Sbjct: 60 EFCRELREQGVRTPILMLTARDAINDRITGLDTGADDYLTKPFVFEELLAHVRALLRRVE 119 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + ++++DP R T AG L L PKE+A+L LL+ +AG ++SR + E ++ Sbjct: 120 LAQPAPITLNDLVIDPQTRGVTRAGARLDLTPKEYAILILLVTHAGEIVSRAQLAEHIWH 179 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYTLG 217 D N ++VH+ +LRRKL I+TV G G+ + Sbjct: 180 ADLIAIDNLIDVHMKNLRRKLDPPGMAALIQTVRGQGFRIS 220 >UniRef50_C6J181 Two-component system response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J181_9BACL Length = 225 Score = 290 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 126/223 (56%), Gaps = 7/223 (3%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +IL+I+DD I I+ GL+ G+ V G++G + D +ILD+ +P +DG + Sbjct: 4 KILIIDDDKTISTMIRRGLTYEGYEVTVANGGKEGLNLVLEDEPDLIILDIMMPDLDGLE 63 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR--T 119 + + R K P+L++T D++A+RV GL GADDYL KPFA E+ AR++AL+RR Sbjct: 64 VCKRLR-KDAGIPILMVTGMDSIADRVHGLETGADDYLVKPFAFEELVARVKALLRRLDH 122 Query: 120 NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 + +L ++++D R A + EF LL M++ +VL+R+L+ ++++ Sbjct: 123 KKKEDEKLIFSDLVVDLSTRQAFRGSRTIEFSTTEFNLLCFFMKHPQQVLTRELLMDRVW 182 Query: 180 TWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTLGE 218 +D SN +EV+V +LR KL I TV G GY L E Sbjct: 183 GFDFRGESNVLEVYVGYLRSKLEAQNEPRLIHTVRGAGYVLRE 225 >UniRef50_C1TR79 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TR79_9BACT Length = 222 Score = 290 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 93/219 (42%), Positives = 140/219 (63%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 +RIL++EDD +IG+ I+ GLS+ G++VDW AL + +ILDL LP G Sbjct: 3 IRILIVEDDGMIGEEIQEGLSRRGYTVDWVRDMESAATALDLENFSMMILDLGLPDGSGL 62 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++L++ R+ G R PV+ILTA D + R+ GL GADDY+ KPF L E++AR+ AL RR Sbjct: 63 ELLQKMRDGGNRLPVIILTAWDTVPNRINGLDNGADDYMVKPFELEELSARIRALARRVR 122 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G +S +R ++ +DP + + G + L E+ LL + N G VLSR+ +E LY Sbjct: 123 GDSSPTIRIADLEIDPATKRVSKDGREVRLSHSEYVLLTTFVENVGIVLSRERLEASLYG 182 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK 219 W+++V SNA++VH+H+LR KLG+D ++ V G GY + +K Sbjct: 183 WEKDVESNAIQVHIHNLREKLGTDIVKNVRGFGYLMDKK 221 >UniRef50_Q480M1 Response regulator n=1 Tax=Colwellia psychrerythraea 34H RepID=Q480M1_COLP3 Length = 243 Score = 290 bits (744), Expect = 2e-77, Method: Composition-based stats. Identities = 99/239 (41%), Positives = 134/239 (56%), Gaps = 22/239 (9%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD + + ++ L + GF VD ++G+ AL +D VILDL LP +DG Sbjct: 1 MRILLVEDDQGLAEALQQSLVREGFVVDHLSRGKLALTALAVPSHDMVILDLGLPDIDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L+E R K PV+ILTARD++ +V+GL GADDYL KPF + E+ ARL + RR Sbjct: 61 LVLKEIRAKKNDLPVIILTARDSIDSKVKGLDYGADDYLAKPFDMQELLARLRVIERRLG 120 Query: 121 GQASNELRHGNVMLDPGKRIATL----------------------AGEPLTLKPKEFALL 158 +S+ + V LD L + KEF +L Sbjct: 121 TASSSMITIDRVSLDTKSHKVYLLQCNQVNNEQNHEQEGEINAQNGASEVHFSKKEFMVL 180 Query: 159 ELLMRNAGRVLSRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLG 217 + LM NAGR+ SR+ IE KLY W EEV SNAVEVH+H LR+ L + FI+ V G+GY + Sbjct: 181 KALMENAGRIQSREQIESKLYQWGEEVLSNAVEVHIHKLRKNLPNKFIQNVRGVGYIIN 239 >UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B5YEK3_DICT6 Length = 232 Score = 290 bits (744), Expect = 2e-77, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 124/224 (55%), Gaps = 8/224 (3%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +ILL+EDD I + + L+K G+ V+ G + D V+LD+ LP DG + Sbjct: 3 KILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDGWE 62 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + +E R+ P+++LTA+D ++V GL++GADDY+ KPF E+ AR+EA++RR Sbjct: 63 VCKEIRKISN-VPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRYQS 121 Query: 122 --QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 S ++ +D KR + G+ + L +EF +L+LL+ + GRV +R +I + ++ Sbjct: 122 DLSKSQKIVAPPFEMDLVKRTVKVKGKEVNLSYREFEILKLLLSSPGRVWTRDMIIKHIW 181 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218 + AV+V++ LR K+ D +I TV +GY E Sbjct: 182 GENFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKFQE 225 >UniRef50_C7ND40 Two component transcriptional regulator, winged helix family n=4 Tax=Fusobacteriaceae RepID=C7ND40_LEPBD Length = 226 Score = 290 bits (744), Expect = 3e-77, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 121/224 (54%), Gaps = 9/224 (4%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +IL+IEDD I ++ L GF V + G++G YD ++LD+ LP M G + Sbjct: 4 KILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVMLPKMSGME 63 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + + RE + P+++LTA+D ++++V G GADDY+ KPF+ E+ AR++AL+RRT Sbjct: 64 VCKRIRETS-QVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALLRRTKK 122 Query: 122 QA--SNELRHGNVMLDPGKRIATLA--GEPLTLKPKEFALLELLMRNAGRVLSRKLIEEK 177 ++ ++ + L +EF LL+ L+ N G VLSR I E+ Sbjct: 123 SVVHKGIFEFEDLTINYSTYEVFRDYGKNLIQLSKREFELLDFLVLNKGIVLSRDKILEE 182 Query: 178 LYTWDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTLG 217 ++ +D N +++++ +LR K+ + I+TV GIG+ Sbjct: 183 VWGFDYIGNDNILDLYIKYLRDKIDRPYERKFIQTVRGIGFIFK 226 >UniRef50_Q3Z753 DNA-binding response regulator n=2 Tax=Dehalococcoides RepID=Q3Z753_DEHE1 Length = 222 Score = 289 bits (742), Expect = 4e-77, Method: Composition-based stats. Identities = 76/220 (34%), Positives = 120/220 (54%), Gaps = 4/220 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL++DD + ++ L + G V++ G G+ ++ +D +ILD+ LP +G Sbjct: 1 MRILLLDDDKCLCQTLERALGEAGHVVEYACDGASGEYFAANSEFDLLILDIGLPDKNGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++ R+ R G VL+LTARD+L +V+GL GADDYLCKPFA E+ AR+ AL RR Sbjct: 61 EVCRKLRADGIVTSVLMLTARDSLDSKVKGLDAGADDYLCKPFACDELFARIRALQRRPP 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + + + D + L E+ +LE + N G +++R ++EE L+ Sbjct: 121 LRVLPVVETAGISFDNVSHRVCGGKTEIKLTAAEYKILEYFITNPGVLITRSMLEEHLWG 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTL 216 + SN ++ + LR+KLG D I+T+ G GY L Sbjct: 181 AESTSVSNTIDSLIKKLRQKLGWDAKSGPIKTLRGAGYRL 220 >UniRef50_B9K181 Two component response regulator n=3 Tax=Rhizobium/Agrobacterium group RepID=B9K181_AGRVS Length = 218 Score = 289 bits (742), Expect = 4e-77, Method: Composition-based stats. Identities = 99/217 (45%), Positives = 134/217 (61%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL++EDD+++G +K K + VD G G A+ Y VILD+ LP G Sbjct: 1 MRILVVEDDVILGSSLKKAFEKHAYGVDLMRDGESGLLAIQDNDYAVVILDVNLPKASGF 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +++R R G + PVL+LTA D++ RVEGL GADDYL KPF L E+ AR+ AL RR Sbjct: 61 EVVRTLRASGNKVPVLLLTALDSIRSRVEGLDEGADDYLVKPFDLDELLARVRALARRYE 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G+ +R GNV LDP IA G PL + KEF LL+LLM AGR +++ IE LY Sbjct: 121 GRTETLIRCGNVELDPSAMIARQNGTPLHVAGKEFHLLKLLMERAGRYVTKSDIEYALYD 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLG 217 V SN +EV ++ LR+KLG+DFI+++ G+GY + Sbjct: 181 ISAMVESNTIEVTIYSLRKKLGADFIKSIRGVGYMVE 217 >UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=36 Tax=Bacilli RepID=B4U3Y8_STREM Length = 247 Score = 289 bits (742), Expect = 4e-77, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 124/230 (53%), Gaps = 13/230 (5%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 R+LL++D+ I + L+K GF + T GR PYD ++LD+ LP +DG + Sbjct: 11 RVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDGIE 70 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + + R KG + P+++++A+ ++V L LGADDY+ KPF+ E+ AR++A++RRT Sbjct: 71 VCKRLRSKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTEA 130 Query: 122 QAS--------NELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKL 173 + S + L P + E L L PKE+ LL LM++ L+R+ Sbjct: 131 EISGDGEEHREPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMTLTRER 190 Query: 174 IEEKLYTWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218 + E+++ +D + V+VH+ LR K+ + +I+T+ G GY E Sbjct: 191 LLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKFKE 240 >UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=Q2RZP5_SALRD Length = 245 Score = 289 bits (742), Expect = 4e-77, Method: Composition-based stats. Identities = 89/230 (38%), Positives = 134/230 (58%), Gaps = 12/230 (5%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RILL+EDD I D ++ L+ G +VD G G + YD ++LD+ LPG DG D Sbjct: 8 RILLVEDDDDIADLLELHLTDAGHAVDVVGDGDDGLARALTEAYDLIVLDIMLPGTDGFD 67 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR--- 118 I R R++ P+L++TA+ ++V GL LGADDY+ KPF++ EV AR++AL RR Sbjct: 68 ICRRLRQEKCPTPILMVTAKTEEVDKVLGLELGADDYITKPFSIREVLARVKALFRRVEV 127 Query: 119 ---TNGQASNE-LRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLI 174 T GQA + + G V+++P KR T+ GE + L KEF LL L R+ GR SR + Sbjct: 128 DQETQGQADDTPIELGKVVVEPEKRKVTVEGEAVDLTSKEFELLLLFARHPGRAFSRDEL 187 Query: 175 EEKLYTWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGEK 219 ++++ + S+ V H++ LR K+ D +++TV G+GY E+ Sbjct: 188 LDEVWGYQYSGYSHTVNTHINRLRNKIEPDPSEPRYVKTVWGVGYRFAER 237 >UniRef50_D2RAW2 Response regulator receiver domain protein n=3 Tax=Actinobacteridae RepID=D2RAW2_GARVA Length = 246 Score = 289 bits (741), Expect = 5e-77, Method: Composition-based stats. Identities = 73/232 (31%), Positives = 120/232 (51%), Gaps = 16/232 (6%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 I++++D+ I + + L GF V+ G + E + + +++D+ LP +DG + Sbjct: 9 IVVVDDEPSIRELLVASLHFAGFEVETAASGSEAVEVIERVNPNLIVMDVMLPDIDGFTV 68 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQ 122 R R+ G + PVL LTARD +++ GL +G DDY+ KPF+L EV AR+ A++RRT Sbjct: 69 TRRIRQNGIKVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQEP 128 Query: 123 ASN--ELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 ++ ++ ++ T G P+ L P E+ LL LM N GRVLS+ I ++ Sbjct: 129 DEETHIIKVADLEINEDSHDVTRCGVPIELSPTEYKLLHYLMDNEGRVLSKSQILNHVWQ 188 Query: 181 WDEEVTSNAVEVHVHHLRRKLGS--------------DFIRTVHGIGYTLGE 218 +D + VE ++ +LR+K+ I T GIGY + E Sbjct: 189 YDWGGDAAIVESYISYLRKKIDGIEITDDSGKQQKVVPLIETKRGIGYMIRE 240 >UniRef50_B7S3C0 Response regulator receiver domain protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S3C0_9GAMM Length = 222 Score = 288 bits (740), Expect = 6e-77, Method: Composition-based stats. Identities = 95/217 (43%), Positives = 140/217 (64%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RILL+EDD+ +G+ ++ L ++VDW G + + + PYD +ILDL LP + G Sbjct: 6 RILLVEDDVQLGESLEAALRLEHYAVDWLRSGEPVRATIGATPYDLMILDLGLPEVPGIQ 65 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 +LR+ R PVL+LTAR+ L ++V+GL GADDYL KPF + E+ AR+ L+RR Sbjct: 66 VLRQTRADKHDIPVLLLTARNTLDDKVDGLDSGADDYLTKPFEIDELFARVRTLLRRRGE 125 Query: 122 QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTW 181 S +L + +DP R+ GE L L +E+A+LE+L+RNAGR +SR +EE +Y+W Sbjct: 126 GRSQQLEARGITIDPVDRLVIFEGEMLDLTAREYAILEILIRNAGRFVSRPRLEEGIYSW 185 Query: 182 DEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE 218 EEV SN VEV++ LR++ GSD I T+ G+GY + + Sbjct: 186 GEEVGSNTVEVYISRLRKRFGSDCIETMRGVGYRISQ 222 >UniRef50_C1ABP4 OmpR family two-component response regulator n=2 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ABP4_GEMAT Length = 231 Score = 288 bits (740), Expect = 7e-77, Method: Composition-based stats. Identities = 87/222 (39%), Positives = 125/222 (56%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LL EDD + D I GL ++ F VD G YDAVILD+ +PGMDG Sbjct: 1 MRLLLAEDDPQLRDAITRGLRELAFVVDSVGDGETAFTMALVNSYDAVILDILMPGMDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 I R R + P+L+LTARDA+ ER++GL GADDYL KPF E+ AR+ AL+RR + Sbjct: 61 AICRGLRARQMAVPILLLTARDAVDERIQGLDAGADDYLTKPFHFGELTARVRALLRRMS 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + + G++ +D + A G L L +EF LL L R+AGR++SR + E ++ Sbjct: 121 VVLPSTMAVGDLEIDTRLQQARRDGALLPLTAREFTLLAYLARHAGRIVSRGELAEHVWD 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYTLGE 218 + + +N ++V+V LRRK+ + T G G L + Sbjct: 181 ENHDPNANLIDVYVSRLRRKVDGAGRRPLLHTRRGQGVLLSD 222 >UniRef50_Q2KYE7 Two-component system response regulator n=7 Tax=Burkholderiales RepID=Q2KYE7_BORA1 Length = 231 Score = 288 bits (739), Expect = 8e-77, Method: Composition-based stats. Identities = 99/219 (45%), Positives = 140/219 (63%), Gaps = 2/219 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL+ EDD ++ DG+ L G++VD G AL + P+D +ILDL LP + G Sbjct: 1 MRILIAEDDSILADGLSRSLRHNGYAVDAVRDGLAADSALAAQPFDLLILDLGLPQVTGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++LR R + PVLILTA D++ +RV+GL LGADDY+ KPFAL E+ AR+ AL RR Sbjct: 61 EVLRRLRARNSLLPVLILTAADSVEQRVKGLDLGADDYMAKPFALSELEARVRALTRRGA 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G S +RHG ++ D R+AT+ L L +E +LLE+L+ +GR++S+ + + L Sbjct: 121 GGGSTLIRHGRLVFDQTGRVATVDDHALDLSAREVSLLEILLSRSGRMVSKTQLVDHLCE 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSD--FIRTVHGIGYTLG 217 W EEV++NA+EV+VH LR+KL I TV G+GY L Sbjct: 181 WGEEVSTNAIEVYVHRLRKKLEPSGVKIITVRGLGYCLE 219 >UniRef50_C0Z5X8 Two-component response regulator n=143 Tax=Firmicutes RepID=C0Z5X8_BREBN Length = 251 Score = 288 bits (739), Expect = 8e-77, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 129/224 (57%), Gaps = 8/224 (3%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 R+LLIED++ + I+ LS F++ G +G + +D ++LD+ LPG+DG Sbjct: 29 RVLLIEDEINMARFIELELSYESFAITVAHDGHKGLKLALQEEWDVILLDVMLPGLDGIA 88 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + ++ R + P+++LTARD++ +RV GL GADDY+ KPFA+ E+ AR+ + RR Sbjct: 89 VCQKIRSVK-KTPIIMLTARDSITDRVFGLDSGADDYIPKPFAIEELLARIRVVFRRQEE 147 Query: 122 Q---ASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 Q L H +++ RI T +P+ L +E+ LL M+N RVL R ++ + + Sbjct: 148 QENVPRTMLAHRGLVVQIEGRIVTKNNQPVELTKREYDLLVTFMKNINRVLPRDVLLDTV 207 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYTLGE 218 + ++ V +N V+V+V +LR K+ +I TV GIGY + + Sbjct: 208 WGFEAAVETNVVDVYVRYLRNKIDFPNEDSYISTVRGIGYVMRK 251 >UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6L0_9BACL Length = 241 Score = 288 bits (739), Expect = 9e-77, Method: Composition-based stats. Identities = 85/228 (37%), Positives = 134/228 (58%), Gaps = 13/228 (5%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 R+L+IED+ + + L+ G+ V G+ G E +D ++LDL LPGM+G + Sbjct: 4 RLLVIEDEPTLSRLLSYNLTNEGYEVIVEDHGQIGYETALRQDFDLILLDLMLPGMNGFE 63 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 I+ + R +G + PV+ILTA++A E V+GL+ GADDY+ KPF + E+ AR+ A++RR+ G Sbjct: 64 IMSKLRSEGVKTPVIILTAKNAEEEVVQGLKSGADDYITKPFGVAELLARVAAVLRRSTG 123 Query: 122 ---------QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRK 172 Q ++++ G + + P K TL GEP+TL+PKEF +L L R G V++R Sbjct: 124 KEEREKPAEQDNSQIVLGALTIYPEKYEVTLNGEPITLRPKEFEVLLYLARKPGVVMTRD 183 Query: 173 LIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYTL 216 + ++ +D V+VHV LR+KL D I ++ G+GY L Sbjct: 184 DLMNAVWGFDYIGGQRTVDVHVSSLRKKLELDPQSVHIDSIRGVGYKL 231 >UniRef50_Q49XM7 Response regulator arlR n=145 Tax=Bacteria RepID=ARLR_STAS1 Length = 220 Score = 288 bits (739), Expect = 9e-77, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 125/221 (56%), Gaps = 7/221 (3%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +IL++ED+ + I+ L + VD G+ G E S YD ++LDL LP ++G + Sbjct: 3 KILIVEDEQNLARFIELELEHENYDVDIEYDGKPGLEKALSNTYDLILLDLMLPNINGLE 62 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 I R+ R + Q P++I+TA+ ++V GL GADDY+ KPF + E+ AR+ A++RR Sbjct: 63 ICRQIR-QNQTTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAMLRR--Q 119 Query: 122 QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTW 181 N + +++D T+ G+PL L E+ LL LL+ N VL R+ I ++ + Sbjct: 120 PQKNLIDIKGIIIDKDAFKVTVDGQPLDLTKTEYDLLFLLVENRNHVLQREQIITDVWGY 179 Query: 182 DEEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTLGE 218 D EV +N V+V++ +LR KL I TV G+GY + + Sbjct: 180 DTEVETNVVDVYIRYLRNKLKPFGKDKCIETVRGVGYVVRQ 220 >UniRef50_Q47456 Transcriptional regulatory protein pcoR n=99 Tax=Bacteria RepID=PCOR_ECOLX Length = 226 Score = 288 bits (738), Expect = 1e-76, Method: Composition-based stats. Identities = 89/220 (40%), Positives = 127/220 (57%), Gaps = 4/220 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RIL++ED+ G ++ GL + G+ D F GR G A YD +ILD+ LP +DG Sbjct: 3 RILIVEDEQKTGRYLQQGLVEEGYQADLFNNGRDGLGAASKGQYDLIILDVMLPFLDGWQ 62 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 I+ RE G EPVL LTA+D + ++V+GL LGADDYL KPF E+ AR+ L+RR Sbjct: 63 IISALRESGHEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLRRARS 122 Query: 122 QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTW 181 QA+ ++ +D +R +G+ + L KE+ LLELL++ G VL R LI ++ Sbjct: 123 QAATVCTIADMTVDMVRRTVIRSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWNM 182 Query: 182 DEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTLG 217 + + +N ++V V LR K+ DF I TV G GY L Sbjct: 183 NFDSDTNVIDVAVRRLRSKIDDDFEPKLIHTVRGAGYVLE 222 >UniRef50_A1RNU1 Two component transcriptional regulator, winged helix family n=23 Tax=Gammaproteobacteria RepID=A1RNU1_SHESW Length = 224 Score = 288 bits (738), Expect = 1e-76, Method: Composition-based stats. Identities = 83/219 (37%), Positives = 127/219 (57%), Gaps = 3/219 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M++LL+ED+ ++ + + L G+ D + + + YD VILD+ LP +G Sbjct: 1 MKLLLVEDNPMLVNELAKQLKLAGYVTDITDKALEADYLIKETQYDCVILDIGLPDGNGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++L WR +G PV++LTAR E+VEG GADDYL KPF E+ AR++AL+ R + Sbjct: 61 ELLEGWRNQGISTPVIMLTARSQWHEKVEGFNAGADDYLGKPFHAQELLARIQALIHRAH 120 Query: 121 GQ---ASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEK 177 G+ S +L +G V LD ++ +A L EF LL++ + + ++LS+ + +K Sbjct: 121 GRLNTPSKQLTYGGVTLDETEQTVKVADHLYELTAMEFRLLKIFLMSPKKLLSKAQLTDK 180 Query: 178 LYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTL 216 LY +D+E SN VEV+V HLR+KLG I T G GY Sbjct: 181 LYQFDDEKESNVVEVYVTHLRKKLGKTAIETRRGQGYIF 219 >UniRef50_Q1H1R2 Two component transcriptional regulator, winged helix family n=2 Tax=Betaproteobacteria RepID=Q1H1R2_METFK Length = 223 Score = 288 bits (738), Expect = 1e-76, Method: Composition-based stats. Identities = 93/220 (42%), Positives = 138/220 (62%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL++EDD ++ +G LSK G++VD G + + + YD ++LD+ LPGMDG Sbjct: 1 MRILVVEDDAILAEGTCESLSKAGYAVDLAETGTKANAMMEAGHYDMLLLDIGLPGMDGF 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++LR R+ PVLI++ARD + R+ GL LGADD++ KPF L E+ AR AL+RR Sbjct: 61 EVLRRLRKHNNSIPVLIISARDDVDFRIYGLDLGADDFMLKPFVLAELHARTRALLRRHT 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 N L G +M+D G + A++ GEP+ L +E+ +L L+RN G+V+ ++ I E L Sbjct: 121 LSERNTLACGKLMVDLGAQRASVNGEPIELSIREWDVLVYLLRNLGKVVRKEAIIETLCD 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSD--FIRTVHGIGYTLGE 218 W +++ NAVEV++ LR KL + IRTV G GY L + Sbjct: 181 WKTDISLNAVEVYISRLRSKLDAHGIHIRTVRGFGYLLDD 220 >UniRef50_P76340 Probable transcriptional regulatory protein yedW n=131 Tax=Proteobacteria RepID=YEDW_ECOLI Length = 223 Score = 288 bits (738), Expect = 1e-76, Method: Composition-based stats. Identities = 79/220 (35%), Positives = 123/220 (55%), Gaps = 6/220 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+ILLIED+ + + GLS+ G+ +D + GR G Y +ILD+ LPGMDG Sbjct: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 IL+ R + PV+ LTARD++ +RV GL GA+DYL KPF+ E+ AR+ A +R+ + Sbjct: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 ++ L + +D + +TL KEF LL LL AG ++ R +I +++ Sbjct: 120 -ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTL 216 + + +N V+V + LR K+ F I T+ G+GY+ Sbjct: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 >UniRef50_A7IE82 Two component transcriptional regulator, winged helix family n=5 Tax=Alphaproteobacteria RepID=A7IE82_XANP2 Length = 220 Score = 287 bits (737), Expect = 1e-76, Method: Composition-based stats. Identities = 106/217 (48%), Positives = 140/217 (64%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL++EDD ++ DG+K GL G +VD T + AL + +DAV+LD+ LP G Sbjct: 1 MRILVVEDDPVLMDGLKVGLGLAGATVDEATTCADARAALAAGRFDAVVLDVMLPDGSGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 D+L R +G PVL+LTA D +RV GL GADDYL KPF L E+ AR+ A+ RR + Sbjct: 61 DVLAGLRARGNATPVLLLTALDEAPDRVRGLDGGADDYLGKPFDLDELNARVRAIARRGH 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G+A L+ G ++LDP ATL G P+ L +EFA+L LM G + SR IEE+LY Sbjct: 121 GRAGPLLKAGALVLDPATLAATLDGLPIALSRREFAVLSALMERPGVIRSRMEIEERLYG 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLG 217 W EEV SNAVEVH+H+LR K+G + I TV G+GY + Sbjct: 181 WQEEVESNAVEVHIHNLRAKVGRETIETVRGLGYRVR 217 >UniRef50_C4ZBN4 Response regulator n=31 Tax=Bacteria RepID=C4ZBN4_EUBR3 Length = 257 Score = 287 bits (737), Expect = 1e-76, Method: Composition-based stats. Identities = 88/222 (39%), Positives = 129/222 (58%), Gaps = 4/222 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 R+L++ED+ I D + L G+ VD G++ E + S YD ++LDL LPGMDG + Sbjct: 33 RLLIVEDEKQICDMVAKSLYAAGYEVDTCYDGKEALECILSENYDLIVLDLNLPGMDGME 92 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 +L+E R+ VLIL+AR +A++VEGL GA+DY+ KPF L E+ AR+ +L RR Sbjct: 93 LLKELRKYNDETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRKFV 152 Query: 122 QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTW 181 Q L+ G + D KR A GEP+ L KE +LE L+ N GR +S++ + E ++ Sbjct: 153 QNDICLKCGEIKFDTIKREAYAKGEPVPLTRKENGILEYLLINIGRPVSQEELIEHVWDA 212 Query: 182 DEEVTSNAVEVHVHHLRRK----LGSDFIRTVHGIGYTLGEK 219 + S A+ VH+ LR+K LG D I G GY + E+ Sbjct: 213 TADSFSGAIRVHMSSLRKKLKAELGYDPILNKVGEGYKIREE 254 >UniRef50_Q02A31 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q02A31_SOLUE Length = 231 Score = 287 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 127/226 (56%), Gaps = 8/226 (3%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RILL EDD + + L G++V+ G YD ++LD+ LP G D Sbjct: 4 RILLAEDDPGLVLTLTDRLQNEGYAVESRQDGDSALAEAMGQSYDLILLDVMLPRRSGFD 63 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + ++ RE P+L+LTAR + ++V GL+ GADDYL KPF ++E+ AR+EAL+RR Sbjct: 64 VCKKLRESEIGVPILMLTARGEVVDKVVGLKSGADDYLTKPFEMMELLARIEALLRRAPV 123 Query: 122 QAS---NELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 + S + G + +D + T AG+P+TL +E+ LL L+ + G ++R+ + ++ Sbjct: 124 RRSLNAGTFQLGGIAVDFRRAEVTRAGKPVTLSAREYRLLGYLIDHCGETVTREDLLTQV 183 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGEK 219 + + + V+VHV LR+KL + +++TV G+GY L ++ Sbjct: 184 WGYSATTDTRTVDVHVAWLRQKLEENPKYPRYLQTVRGLGYKLSDE 229 >UniRef50_B7QTW7 Two-component response regulator n=1 Tax=Ruegeria sp. R11 RepID=B7QTW7_9RHOB Length = 225 Score = 287 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 90/225 (40%), Positives = 131/225 (58%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD IG GL G VDW GR+ A + YD ++ D +P +DG Sbjct: 1 MRILLLEDDADIGAWTSKGLGAAGHVVDWIENGREALIAASTRDYDVLVFDRMVPDLDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 LR R P+++LTA A+ +RVEGL GADDYL KPFA+ E+ AR+ AL RR Sbjct: 61 SALRTLRGARINTPMILLTALGAVEDRVEGLEAGADDYLSKPFAMSELLARITALSRRGR 120 Query: 121 GQ---ASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEK 177 G+ + +L H + LD + T G + L PKEF LLE+LMR+ GR+ +R ++ E+ Sbjct: 121 GEGDAPATKLSHRGLELDLLSQTCTCHGTAVPLNPKEFRLLEVLMRSKGRIQTRAMLLER 180 Query: 178 LYTWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTLGE 218 ++ + E +++ VE H+ LR K+ +++IRT+ G GY + Sbjct: 181 VWDINFEPSTSVVETHMSRLRNKIEKPFDAEYIRTIRGSGYMFID 225 >UniRef50_C1XYD1 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XYD1_9DEIN Length = 226 Score = 287 bits (736), Expect = 2e-76, Method: Composition-based stats. Identities = 88/220 (40%), Positives = 123/220 (55%), Gaps = 3/220 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMD-- 58 MR+LL+EDD + I GL G VD G+ YD +ILD+ LP Sbjct: 1 MRVLLVEDDPRLAALIAEGLRDDGLMVDHAPDAAIGQGMAELEAYDLLILDVMLPEGPQA 60 Query: 59 GRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR 118 G D+ R R + + P+L LTAR + ++ GL G DDYL KPF E+ AR+ AL+RR Sbjct: 61 GFDLARTLRNQRDKIPILFLTARGDMDSKLTGLDTGGDDYLTKPFDFRELRARIRALVRR 120 Query: 119 TNGQASNELRH-GNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEK 177 G+A+N + +LD G+P+ L P+E+AL+E L N GR SR + E+ Sbjct: 121 AKGEAANLIPLPKGYVLDLSAHQVLKGGQPVPLTPREYALVECLGLNPGRAYSRNSLIER 180 Query: 178 LYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLG 217 ++ + EV + V+V+V LRRKLG DF+ TV G+GY LG Sbjct: 181 VWPGESEVDTKVVDVYVSSLRRKLGEDFVETVRGLGYRLG 220 >UniRef50_B7KB48 Multi-component transcriptional regulator, winged helix family n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7KB48_CYAP7 Length = 597 Score = 287 bits (736), Expect = 2e-76, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 124/223 (55%), Gaps = 6/223 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+ILLIEDD I I T L ++VD T G G E Y ++LD+ +P +DG Sbjct: 1 MKILLIEDDPFISQLISTKLIANRYTVDLVTDGELGLEFALMGKYSLILLDVIIPILDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + + R+ G P+++LTA+++ + + GL GADDY+ KPF + ++ AR+ AL+RR + Sbjct: 61 SLCHQLRDSGCETPIIMLTAKNSDEDVITGLDAGADDYVTKPFDVEQLLARIRALIRRQD 120 Query: 121 -GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 + + L G + DP T + + L PKE+++LEL +R+ R+ SR I ++L+ Sbjct: 121 IKRFPSILTWGALQFDPILIKVTYQDQVINLSPKEYSILELFLRHPQRIFSRSDIIDRLW 180 Query: 180 TWDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLG 217 DE T AV + LRRKL + I T++ +GY L Sbjct: 181 MIDESPTEAAVTNLIKDLRRKLTAAGMKEELIETIYKLGYRLK 223 Score = 81.7 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 55/113 (48%), Gaps = 2/113 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 ++++++DD + + L V ++ + + L + D ++LDL +P +G + Sbjct: 477 KVMIVDDDPIFLKTLMALLQPWELQVTTLSKSDRFWQVLTTTNPDVLLLDLEMPTFNGLE 536 Query: 62 ILREWRE--KGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARL 112 + R R+ K P++++TA + GADD++ KP EV AR+ Sbjct: 537 LCRVVRQDSKYNHLPIVVVTAHTDDNSIQQVFAAGADDFISKPITDSEVLARV 589 Score = 42.8 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 2/88 (2%) Query: 14 DGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLT--LPGMDGRDILREWREKGQ 71 I+ G +++ + + L D ++L L L G +L++ +++ Sbjct: 364 QAIQEAAPDQGINIEIISDEIIPWQWLKQNTPDVIMLSLHRSLTQDSGLMLLQQLKKQFP 423 Query: 72 REPVLILTARDALAERVEGLRLGADDYL 99 PVL+ T +D L ERV +R G + Y+ Sbjct: 424 SIPVLVTTEKDNLYERVAVVRSGGEGYI 451 >UniRef50_A6TPN8 Two component transcriptional regulator, winged helix family n=7 Tax=Bacteria RepID=A6TPN8_ALKMQ Length = 225 Score = 287 bits (736), Expect = 2e-76, Method: Composition-based stats. Identities = 85/224 (37%), Positives = 128/224 (57%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL+IED++ + + + L K ++VD G G + S YD ++LD+ LP MDG Sbjct: 1 MRILIIEDEIPLAEALSQMLKKNNYTVDLLHDGESGLDYALSDIYDLILLDIMLPKMDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 IL+E R++G PV++LTA+ + ++V GL GADDYL KPFA E+ AR+ A+ RR Sbjct: 61 SILKEIRQEGIATPVILLTAKGEITDKVMGLDSGADDYLAKPFATEELLARIRAISRRKG 120 Query: 121 GQ-ASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 L++G+V L+P + + + L KE LL L+ S++LI EK++ Sbjct: 121 EVILDGTLKYGDVQLNPSTLKLSKESKEVKLTLKESDLLAFLILRNNLASSKELIIEKIW 180 Query: 180 TWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTLGEK 219 +D +V N VEV++ LR+KL I T+ G+GY L K Sbjct: 181 GFDSDVEHNHVEVYISFLRKKLLFLTSKVVINTLRGVGYILEVK 224 >UniRef50_Q83N47 Two-component system response regulator n=8 Tax=Actinobacteridae RepID=Q83N47_TROWT Length = 251 Score = 287 bits (736), Expect = 2e-76, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 120/223 (53%), Gaps = 5/223 (2%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +IL+++D+ I D + L G+ V G A+ + D +I+D+ LP M G Sbjct: 29 KILVVDDEANIRDLLAASLRFAGYGVVTAGNGAGAVSAVLAEEPDLIIMDVMLPDMSGFA 88 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN- 120 + RE G R PV+ L+ARD+ +++ GL +G DDY+ KPF+L E+ AR+ A++RRT Sbjct: 89 ATKRLREAGFRCPVIFLSARDSTEDKITGLTVGGDDYVTKPFSLDEILARVAAILRRTKI 148 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 +R G++++D L G + L P EF LL M N RVLS+ I ++ Sbjct: 149 DDVDATIRVGDLVIDQNSNEVFLKGNLIDLSPTEFKLLRYFMLNPNRVLSKSQILGHVWD 208 Query: 181 WDEEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTLGEK 219 +D + S+ VE ++ ++RRKL + I T G GY + + Sbjct: 209 YDFDGDSSIVESYISYIRRKLAAYSSETIIHTKRGFGYIMRTR 251 >UniRef50_C3QD36 Two-component system response regulator n=8 Tax=Bacteroides RepID=C3QD36_9BACE Length = 228 Score = 287 bits (736), Expect = 2e-76, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 126/224 (56%), Gaps = 7/224 (3%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 IL+IED+ + + GL + G+ G G + +D VI D+ LP MDG ++ Sbjct: 4 ILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHTFDLVISDIVLPKMDGFEL 63 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQ 122 +E R+ P+L+LTA + ++++G GADDY+ KPF E+ AR++ L++R G Sbjct: 64 AKEIRKTNPNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKRVTGN 123 Query: 123 A---SNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 A EL + ++ +D ++ G + L PKE+ LL ++ NA RVLSR I EK++ Sbjct: 124 AQELPQELVYADLRIDLQRKDVERNGISIKLSPKEYNLLLYMVENAERVLSRVEIAEKVW 183 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTLGEK 219 + +N ++V++++LR+K+ DF I T G+G+ L +K Sbjct: 184 NTHFDTGTNFIDVYINYLRKKIDRDFEPKLIHTKAGMGFILTDK 227 >UniRef50_Q99U73 Response regulator arlR n=10 Tax=Firmicutes RepID=ARLR_STAAN Length = 214 Score = 287 bits (736), Expect = 2e-76, Method: Composition-based stats. Identities = 72/219 (32%), Positives = 121/219 (55%), Gaps = 12/219 (5%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 IL++ED+ + ++ L+ ++VD G+ G + S YD +ILDL LP ++G +I Sbjct: 4 ILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSINGLEI 63 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQ 122 R+ R++ Q P++I+TA+ ++V GL GADDY+ KPF + E+ AR+ A++RR Sbjct: 64 CRKIRQQ-QSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR--QP 120 Query: 123 ASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTWD 182 + + +L T+ G + L E+ LL LL N V+ R+ I ++ ++ Sbjct: 121 QKDIIDVNGTLL-----KVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWGYN 175 Query: 183 EEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTLG 217 EV +N V+V++ +LR KL I TV G+GY + Sbjct: 176 SEVETNVVDVYIRYLRNKLKPYDRDKMIETVRGVGYVIR 214 >UniRef50_Q030C5 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=6 Tax=Lactococcus lactis RepID=Q030C5_LACLS Length = 234 Score = 287 bits (735), Expect = 2e-76, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 123/222 (55%), Gaps = 6/222 (2%) Query: 1 MR--ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYS-APY-DAVILDLTLPG 56 M+ IL+IED+ I + ++T LS G++V G G + Y D V+LD +P Sbjct: 13 MKRQILIIEDEESISNLLETELSFEGYNVFSAADGMSGLKIFEEKQEYLDVVLLDWMIPK 72 Query: 57 MDGRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALM 116 +DG ++LR ++ + PV+ +TARD + ++V GL GADDYL KPF + E+ ARL + Sbjct: 73 LDGLEVLRRMKKMTNKVPVIFVTARDYVGDKVAGLDAGADDYLTKPFNIEELMARLRVIF 132 Query: 117 RRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEE 176 R +G V L+PG+ + +L +EFALL L + G ++SR I E Sbjct: 133 R--KNTQPAIYSYGTVSLNPGEHTVEYQEKATSLTQREFALLLFLFEHQGEIISRDDILE 190 Query: 177 KLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE 218 +++ + N V+ +V +LR+KL + I T+ G+GY L + Sbjct: 191 EVWGMNFGGQLNTVDTYVRYLRKKLDKNMIETIRGLGYRLNK 232 >UniRef50_A6W7C9 Two component transcriptional regulator, winged helix family n=37 Tax=Actinobacteridae RepID=A6W7C9_KINRD Length = 254 Score = 287 bits (735), Expect = 2e-76, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 121/226 (53%), Gaps = 14/226 (6%) Query: 5 LIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILR 64 ++ED+ I D + L G++V+ G G E D V+LD+ LPG DG ++ R Sbjct: 22 VVEDEPTIADAVARRLRAEGYTVETAGDGPSGVELCERVTPDVVVLDVMLPGFDGLEVCR 81 Query: 65 EWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQAS 124 + + PVL+LTARD +++ GL +GADDY+ KPF++ E+ AR+ L+RR + Sbjct: 82 RV-QAARPVPVLMLTARDDETDKLVGLGVGADDYMTKPFSMRELVARVNGLVRRVERARA 140 Query: 125 NE-------------LRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSR 171 + G + +D +R AG + L P EF LL L + VL+R Sbjct: 141 LVGAPAPSAEAMRFPVSDGELEIDRAQRRVRRAGTEVHLTPTEFDLLVCLAESPRTVLTR 200 Query: 172 KLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLG 217 + + E+++ W + + V+ HV LRRKLG+D +RTVHG+GY Sbjct: 201 EKLLEEVWDWADASGTRTVDSHVKALRRKLGADLVRTVHGVGYAFE 246 >UniRef50_C7MDU8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=19 Tax=Actinobacteridae RepID=C7MDU8_BRAFD Length = 279 Score = 287 bits (735), Expect = 2e-76, Method: Composition-based stats. Identities = 86/225 (38%), Positives = 124/225 (55%), Gaps = 10/225 (4%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 R+++IED+ I I L+ G+ V G G + D V+LD+ LPG DG + Sbjct: 16 RVVVIEDEPTITRAIADRLTAEGWEVSTALDGPSGVRTVAEVRPDVVVLDVMLPGFDGLE 75 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + R + + PVL+LTARD + + GL +GADDY+ KPF++ E+ ARL+AL+RR Sbjct: 76 VCRRI-QADEPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSIRELVARLKALLRRVRR 134 Query: 122 QASN---------ELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRK 172 A L+ G++++D R AG P L P EF LL L G VL+R+ Sbjct: 135 AAPPPPSESEKQEALQIGDLVIDRAGRRVMRAGAPAHLTPTEFDLLLCLANAPGTVLTRE 194 Query: 173 LIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLG 217 + ++ W + + V+ HV LRRKLGSD +RTVHG+GY L Sbjct: 195 QLLADVWDWVDATGTRTVDSHVKALRRKLGSDLVRTVHGVGYALE 239 >UniRef50_B4U9M6 Two component transcriptional regulator, winged helix family n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U9M6_HYDS0 Length = 225 Score = 287 bits (735), Expect = 2e-76, Method: Composition-based stats. Identities = 68/221 (30%), Positives = 124/221 (56%), Gaps = 4/221 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 + L++EDD L+ + ++ G GF VD G Q + + YD +ILD+ +P +DG Sbjct: 4 KALIVEDDELLLETLEKGFRHEGFEVDIAKDGFQALQKAKTNSYDIIILDVVIPKIDGVK 63 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + ++ R + P+++LTA+ L +++EGL GADDY+ KPF+ E+ R++ ++RR N Sbjct: 64 VCKQLRLQS-EIPIIMLTAKSQLEDKLEGLEAGADDYITKPFSFKELIMRVKTVLRRYNK 122 Query: 122 QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTW 181 ++ ++ +D G+ + L PKEF LL++L +N + + R+++ K++ Sbjct: 123 VQEEKIVLKDLTMDLKDFKVFYKGKAINLTPKEFELLKVLAQNPNKTIRREVLLNKVWGI 182 Query: 182 DEEVTSNAVEVHVHHLRRKLG---SDFIRTVHGIGYTLGEK 219 + SN V+V++ ++R KL I T+ G GY L + Sbjct: 183 ASDYDSNIVDVYIKNIRNKLEDKPPKLILTIRGRGYMLSTE 223 >UniRef50_C6RM27 Transcriptional regulatory protein QseB n=1 Tax=Acinetobacter radioresistens SK82 RepID=C6RM27_ACIRA Length = 221 Score = 287 bits (735), Expect = 2e-76, Method: Composition-based stats. Identities = 82/217 (37%), Positives = 128/217 (58%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M ++L+EDD I I L + SV+ + + + D +LDL LP DG Sbjct: 1 MFVVLVEDDPYIAHSICAALDFLNISVEHVSTASAADYFIRHSAVDLCLLDLGLPDQDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++LR+WR+ P+L+LTAR + +E L LGADDYL KPF L E+ ARL AL RR Sbjct: 61 ELLRKWRQDQIHTPILVLTARIQTRQCIEALNLGADDYLTKPFELDELVARLHALTRRHR 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G +SN L+ ++ L+ + + + L +E++LLE LM + ++L + + +KLY Sbjct: 121 GFSSNVLQFEDLSLNQDTQEVFYQHQAIQLSRREYSLLETLMSHPNQILKNEQLLDKLYG 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLG 217 + + + SNA+ VH++HLR+KL +DFI+T+ G+GY Sbjct: 181 YQDSIESNALNVHIYHLRQKLNADFIQTIRGVGYMFK 217 >UniRef50_C2KX66 Two component response regulator n=2 Tax=Lachnospiraceae RepID=C2KX66_9FIRM Length = 228 Score = 287 bits (735), Expect = 3e-76, Method: Composition-based stats. Identities = 82/223 (36%), Positives = 130/223 (58%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+ED+ ++ IK L + + VD G + E +A YD +ILD+ +P ++G Sbjct: 1 MRILLVEDEKILSKSIKMILERAEYEVDTAYDGEEALEYAKTAIYDLMILDVMMPKLNGY 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + R+ R++ P+L+LTA+ L +R+EGL GAD YL KPF E+ A + AL+RR Sbjct: 61 QVARQLRKEKNGLPILMLTAKSQLEDRIEGLEGGADYYLTKPFDKRELLACISALLRR-Q 119 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 GQ N L G++ LD + + L L KEF L+ +L++ ++LS++ I +K++ Sbjct: 120 GQEVNSLSFGDLSLDLDSKDLSSGAHSLKLSKKEFELMRMLLQGKNQILSKEQILQKVWG 179 Query: 181 WDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTLGEK 219 +D + N VEV+V LR+KL I++ G+GY L E+ Sbjct: 180 YDSDAVENHVEVYVGFLRKKLRLLESRVSIQSRRGLGYFLAEQ 222 >UniRef50_A5UPS1 Two component transcriptional regulator, winged helix family n=7 Tax=Chloroflexi RepID=A5UPS1_ROSS1 Length = 245 Score = 286 bits (734), Expect = 3e-76, Method: Composition-based stats. Identities = 85/225 (37%), Positives = 119/225 (52%), Gaps = 10/225 (4%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 ILL+EDD ++ + + + GF V + G G E D +ILD+ LPG+DG + Sbjct: 4 ILLVEDDSVLLETLSYNFERAGFQVATASDGLTGLEMARRTHPDLIILDVMLPGLDGFSV 63 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMR----R 118 R K P+++LTA A R+ GL LGA DY+ KPF++ E+ AR+ A++R + Sbjct: 64 CRAV-AKETTVPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILRWNERQ 122 Query: 119 TNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 +SN L G V LD R + L KEF LL LM NAG LSR L+ E++ Sbjct: 123 RQTPSSNVLCVGPVQLDRNSRRVWYKDREIELSHKEFDLLACLMHNAGVALSRDLLLERV 182 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218 + D ++ ++VHV LR KL D IRTV GIGY + Sbjct: 183 WGSDFLGSNRTIDVHVRWLREKLEPDPANPTLIRTVRGIGYCFQD 227 >UniRef50_B8G7R1 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G7R1_CHLAD Length = 234 Score = 286 bits (734), Expect = 3e-76, Method: Composition-based stats. Identities = 93/222 (41%), Positives = 130/222 (58%), Gaps = 7/222 (3%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 IL+++D+ I + K L G+ V T G +G + D ++LDL LPGMDG +I Sbjct: 5 ILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLMLPGMDGMEI 64 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQ 122 REK +L+LTAR +RV GLR+GADDYL KPF+ E+ AR+EA++RR G+ Sbjct: 65 TARLREKSDVF-ILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAILRRRRGK 123 Query: 123 A--SNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 S+ +R +V +DP R A AG+ L L P EF LL L RN RVLSR+ + EK++ Sbjct: 124 PVKSSVMRFTHVEIDPDAREARAAGQLLELTPTEFDLLIALARNHNRVLSREDLIEKVWG 183 Query: 181 WDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTLGE 218 D T V+V+V +RRK+ G + IRT G+GY + Sbjct: 184 ADFYGTDRVVDVYVSQVRRKIEALTGENLIRTARGVGYRFVD 225 >UniRef50_A1TXC3 Two component transcriptional regulator, winged helix family n=2 Tax=Marinobacter RepID=A1TXC3_MARAV Length = 227 Score = 286 bits (734), Expect = 3e-76, Method: Composition-based stats. Identities = 102/219 (46%), Positives = 140/219 (63%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL EDD + + + + L +VDW G+Q AL + +D ILDLTLP +DG Sbjct: 1 MRILLTEDDHPLANTMLSMLRDDQNTVDWVDDGQQALNALLNESFDLAILDLTLPRVDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 DI+R+ RE+G P++ILTAR L E+++GL GADDYL KPFA+ E+ AR+ A+ RR + Sbjct: 61 DIVRQVREQGVELPIIILTARSELTEKLQGLDAGADDYLTKPFAMSELKARIRAVTRRRS 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G + L+ G ++LDP + E L E +L LMR+ +V +R+ +EE+LY Sbjct: 121 GTRVSGLKVGRLVLDPDSAQLQVGTETFVLPRSELQILHYLMRHPDQVATRRRLEEQLYG 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK 219 WD+ SNA+EVHVHHLRR+LG IRTV G+GY L K Sbjct: 181 WDQGAESNALEVHVHHLRRRLGKQAIRTVRGVGYMLDSK 219 >UniRef50_B4B5Q6 Response regulator receiver modulated diguanylate cyclase n=1 Tax=Cyanothece sp. PCC 7822 RepID=B4B5Q6_9CHRO Length = 813 Score = 286 bits (734), Expect = 3e-76, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 120/229 (52%), Gaps = 11/229 (4%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL IEDD + + L K + V+ T G G + ++ YD ++LD LP + G Sbjct: 1 MKILCIEDDESLAKLLYQILVKQHYEVEIATDGETGWNLVTTSAYDLILLDWMLPKLTGI 60 Query: 61 DILREWR-------EKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLE 113 ++ + R + Q P+L++T D +V GL GADDYL KP E+ AR+ Sbjct: 61 ELCEKLRTRNGLIPSQNQDTPILLMTGLDTTTSKVMGLDAGADDYLVKPLDFEELLARIR 120 Query: 114 ALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKL 173 AL+RR +G+ + L+ G + L P T + + L KE+ LLEL +RN ++ S Sbjct: 121 ALLRRKSGERAPMLKWGQLCLCPNSGQVTYLEQKIQLAQKEYKLLELFLRNPEQIFSLSR 180 Query: 174 IEEKLYTWDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYTLGE 218 + + L++ ++ T AV H+ LR+KL D + T++ +GY L + Sbjct: 181 LVDSLWSIEKTPTEGAVRAHIKGLRQKLKQAGVPDPLETIYKMGYRLKK 229 Score = 70.9 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 58/153 (37%), Gaps = 28/153 (18%) Query: 24 GFSVDWFTQGRQGKEALYSAPYDAVILDLTLPG-------------MDGRDILREWRE-- 68 G+ + ++ +Q E L + D +ILD+ +G ++ + R Sbjct: 528 GYQLTLLSEPQQFWEILEQSEPDLLILDIKFSKPASSDQEKERSSFFNGIELCQVIRNDL 587 Query: 69 KGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELR 128 + R PV++L+ L G GADD+L KP E+ R+ + ++ + + Sbjct: 588 RWNRLPVILLSVHTDLETVQRGFMAGADDFLSKPVVASELLIRVRSRLK--QRKMWKIIE 645 Query: 129 HGNVM-----------LDPGKRIATLAGEPLTL 150 + + L +A G+P L Sbjct: 646 YDELTGVSLRRKALEDLTRAIHLAQRQGQPFCL 678 Score = 59.0 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 8/132 (6%) Query: 3 ILLIEDDMLIGDGI-KTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTL----PGM 57 +L++E DM + + K L+ G T + ++ L S + ++LDL P Sbjct: 382 LLILESDMTLRQLLVKEALTW-GIETQVATTLDEAEKLLNSGQCNVMLLDLNFYDSEP-- 438 Query: 58 DGRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMR 117 G L + P +ILTA ++ +R+E R G +L KP ++ A + +R Sbjct: 439 TGLQFLATLNRQHPSLPAIILTAEESFEKRIEAARWGNHYFLVKPVVPSQILAVVTQTLR 498 Query: 118 RTNGQASNELRH 129 + + ++ L Sbjct: 499 QASESSAKILIV 510 >UniRef50_B0TXH6 Response regulator receiver protein n=18 Tax=Francisella RepID=B0TXH6_FRAP2 Length = 228 Score = 286 bits (734), Expect = 4e-76, Method: Composition-based stats. Identities = 88/219 (40%), Positives = 141/219 (64%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LL EDD+ +G+G+ L K G V+ + G + + S YD V+LD+ +P G Sbjct: 1 MRLLLAEDDLNLGEGLLEALQKEGLIVNLVSDGEAAQTFIESGLYDIVVLDIGMPIKTGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMR--- 117 ++LR R KG + P+++LTARD L +R++GL LGADDYL KPF L E+ AR++A+ R Sbjct: 61 EVLRNVRNKGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRID 120 Query: 118 -RTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEE 176 R+ E++ G+ +P T G + + KE ALL +L++NAGRV+ + + E Sbjct: 121 TRSGKSTKEEIKFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLLE 180 Query: 177 KLYTWDEEVTSNAVEVHVHHLRRKLG-SDFIRTVHGIGY 214 ++Y+ D+E+ +N +EVH+H+LR+K+ +FI+T+ G+GY Sbjct: 181 EVYSTDKEMDTNTLEVHMHNLRKKINIPNFIQTIRGVGY 219 >UniRef50_B2TDT5 Two component transcriptional regulator, winged helix family n=8 Tax=Proteobacteria RepID=B2TDT5_BURPP Length = 227 Score = 286 bits (734), Expect = 4e-76, Method: Composition-based stats. Identities = 102/220 (46%), Positives = 140/220 (63%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD+ IG + L +SVDW G G++A+ +A Y V+LDL LPG+ G Sbjct: 1 MRILLVEDDLQIGQSLLRALKDADYSVDWVRDGVAGRDAMANAEYTVVLLDLGLPGLSGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++L+ R G PVLILTARD L RV+GL +GADDYL KPF + E+ AR+ A++RR Sbjct: 61 ELLKSSRAAGNAVPVLILTARDDLDSRVQGLDVGADDYLLKPFDVPELLARIRAVLRRKA 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G AS+ L ++ LD KR T G L +EFAL+ + G +LSR+ +E++LY Sbjct: 121 GYASSRLGDESLSLDLDKRTLTCNGATTVLSAREFALMLAFLERPGTILSREQLEDRLYG 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGY--TLGE 218 W +EV SNAV+V +H +R+K G IR V G+G+ LGE Sbjct: 181 WGKEVESNAVDVLIHSVRKKFGLSVIRNVRGLGWTVMLGE 220 >UniRef50_A5N1L7 Predicted transcriptional regulator n=8 Tax=Bacteria RepID=A5N1L7_CLOK5 Length = 228 Score = 286 bits (733), Expect = 4e-76, Method: Composition-based stats. Identities = 89/222 (40%), Positives = 131/222 (59%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL++ED+ + + + L + +SVD G G + S YD +ILD+ LP MDG Sbjct: 1 MRILMVEDEKYMAEAVAQILKRNHYSVDLEYNGESGLDCGLSGIYDIIILDIMLPKMDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L+E R G PV++LTA+ ++V GL GADDYL KPF E+ ARL AL RR + Sbjct: 61 SLLKELRRNGIETPVILLTAKGETEDKVRGLDSGADDYLAKPFEAEELLARLRALGRRKS 120 Query: 121 GQASN-ELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 + L++G++ LDP + + L KE LLELL++ G ++S+ +I EKL+ Sbjct: 121 ELVNEGILKYGDMKLDPLNLRLSCRKQEFKLTLKECQLLELLIKGKGIIISKNVIVEKLW 180 Query: 180 TWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTLG 217 ++ +V N VEV+V LR+KL + FI+TV G GY +G Sbjct: 181 GYETDVEYNNVEVYVSFLRKKLRNIKSNVFIQTVRGAGYVIG 222 >UniRef50_Q2JX56 DNA-binding response regulator n=29 Tax=Cyanobacteria RepID=Q2JX56_SYNJA Length = 246 Score = 286 bits (733), Expect = 4e-76, Method: Composition-based stats. Identities = 81/232 (34%), Positives = 124/232 (53%), Gaps = 23/232 (9%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALY---SAPYDAVILDLTLPGMD 58 RILL++D++ + D + L + G SVD +G E L + PYD ++LD LPG+ Sbjct: 3 RILLVDDEVELADSLAQHLRREGHSVDVAYEGNSAWELLQKPPAPPYDLLVLDWMLPGLS 62 Query: 59 GRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR 118 G + ++ R+ + P+L LTA+D L +RVEGL GADDYL KPF L E+ AR+ AL+RR Sbjct: 63 GLSLCQQVRQVDRATPILFLTAKDTLDDRVEGLDAGADDYLVKPFELRELLARVRALLRR 122 Query: 119 TNGQAS--NELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEE 176 G L+ G++ LD ++A G + L KEF LLE M + G++L+ + I E Sbjct: 123 AAGPGEGIPRLQIGDLELDRENQVAYRQGRMIHLSQKEFRLLEYFMAHPGQLLTHEQIYE 182 Query: 177 KLYTWDEEVTSNAVEVHV-----------HHLRRKLGSDFIRTVHGIGYTLG 217 +++ ++ +SN + V + I V+G GY G Sbjct: 183 RVWAGEDPPSSNVLAAQVRLLRRRLRLPGS-------PELIHAVYGKGYRFG 227 >UniRef50_A5FBX2 Two component transcriptional regulator, winged helix family n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FBX2_FLAJ1 Length = 223 Score = 286 bits (733), Expect = 4e-76, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 122/223 (54%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M +LLIEDD I + I GL + F+V G ++ + +D +++D+ LPG+DG Sbjct: 1 MNVLLIEDDKRISEFIIKGLEENNFTVHLAETGEMARDLVQENTWDIILMDIMLPGIDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +++ R K P+LIL+A ++V L GADDYL KPF E+ +R+ AL RRT Sbjct: 61 QLVKLMRFKKIHTPILILSALSNTDDKVTALDSGADDYLVKPFHFKELISRVNALTRRTK 120 Query: 121 ---GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEK 177 + G + ++P + T + + L P+E+ LL L+ N +V+SR I Sbjct: 121 FNYNEPETLYTCGTLTINPDEHKVTENDKLIDLSPREYKLLLYLLENRNKVMSRTQILTA 180 Query: 178 LYTWDEEVTSNAVEVHVHHLRRKLGSD--FIRTVHGIGYTLGE 218 ++ + + +N V+V++ +LR K+ + FI T+ GIGY L E Sbjct: 181 VWGINYDNNTNVVDVYISYLRNKIEHNHKFIHTIKGIGYMLKE 223 >UniRef50_UPI0001745DFF Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001745DFF Length = 231 Score = 286 bits (733), Expect = 4e-76, Method: Composition-based stats. Identities = 97/220 (44%), Positives = 139/220 (63%), Gaps = 4/220 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L IED + + L+++G +VD + +G + A YDAVILD+ LPG G Sbjct: 1 MRLLFIEDATRLRKTVARALTRLGHAVDEASSAEEGAQLAELAAYDAVILDIMLPGQSGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++L WR++ PVL+LTA D++ +RV GL GADDYL KPFA+IE+AARLEAL+RR + Sbjct: 61 ELLATWRQQQVDTPVLLLTALDSVEDRVRGLVTGADDYLIKPFAIIELAARLEALVRRRH 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G+ + +R G + +D R + G P+TL +EFALL+ L R+ G++ SR+ IE +LY+ Sbjct: 121 GKPDSRIRVGPLEIDFAARTVSRLGNPVTLTAREFALLDCLARHPGQIFSREQIEARLYS 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYTL 216 + SNAV+ V+ LRRKL I T G+GY L Sbjct: 181 ETDSPLSNAVDTAVYSLRRKLSPPGVPQLIHTRRGLGYLL 220 >UniRef50_Q2SKY7 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=2 Tax=Bacteria RepID=Q2SKY7_HAHCH Length = 223 Score = 285 bits (732), Expect = 5e-76, Method: Composition-based stats. Identities = 91/222 (40%), Positives = 129/222 (58%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L+IED ++ + GL G+ VD G +G YD +ILD+ LP M+G Sbjct: 1 MRLLVIEDAEILRQSLVIGLGDAGYVVDAAADGEEGLWLASEQGYDLIILDIMLPHMNGF 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++L R G VL+LTARD + +RV GLR GADDYL KPF E+ AR+EAL+RR Sbjct: 61 ELLDRLRTLGADSLVLMLTARDEVEDRVLGLRSGADDYLVKPFDFDELLARIEALLRRRA 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G ASN L G + ++ + +++G P++L P+E+ALLE L N RV+SR+ IE K+Y Sbjct: 121 GCASNLLEIGELTINLHSKQVSVSGVPVSLPPREYALLECLALNRHRVVSRQEIEHKIYD 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYTLGE 218 E SN V+ + LR+ + FI T G GY + + Sbjct: 181 DKIEPMSNVVDSAISSLRKMIDHKDRPSFILTRRGHGYQIRQ 222 >UniRef50_A9AWM9 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWM9_HERA2 Length = 232 Score = 285 bits (732), Expect = 5e-76, Method: Composition-based stats. Identities = 88/229 (38%), Positives = 135/229 (58%), Gaps = 12/229 (5%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RIL+++D+ + D +++ + GF+V G L + YD +ILD+ LPG+DG Sbjct: 3 RILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDGFG 62 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 +LR+ R +G +PV++LTAR +RV GL LGADDY+ KPF+ E+ AR+ AL+RRT Sbjct: 63 VLRQMRAEGFEQPVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRRTAE 122 Query: 122 QASNELRHGN-------VMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLI 174 + + G+ + LD +R AT LTL+PKEF LL L + G+V +R+++ Sbjct: 123 ASRLRQQIGDAAPTSSGLQLDNARRRATFRDVQLTLRPKEFDLLAYLASHPGQVFTREVL 182 Query: 175 EEKLYTWDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGE 218 +++ +DE V + V+VH+ LR KL S+ I+T GIGY E Sbjct: 183 LGQVWGYDEYVDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGYRFIE 231 >UniRef50_A8F5U3 Two component transcriptional regulator, winged helix family n=1 Tax=Thermotoga lettingae TMO RepID=A8F5U3_THELT Length = 228 Score = 285 bits (732), Expect = 5e-76, Method: Composition-based stats. Identities = 81/222 (36%), Positives = 130/222 (58%), Gaps = 4/222 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 ++L++ED+ + + IK L K G+ V Q + + YD +++D+ LPG++G + Sbjct: 7 KVLIVEDNEDLLNSIKEFLLKEGYDVSCAVDAEQAFDMVIEDHYDCLVVDVLLPGINGFE 66 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + RE P+LILTA DA+ ++V GL GADDYL KPF E+ AR+++L+RR+N Sbjct: 67 FVEHLRESLINVPILILTALDAINDKVRGLSCGADDYLTKPFDFRELLARIKSLIRRSNI 126 Query: 122 QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTW 181 E+ + L+ R T+ L + +EFALLEL +RN G V SR+ I EK++ Sbjct: 127 TKGEEINFKGLKLNSRSRQVTVEDTVLKMSKREFALLELFLRNPGIVFSREEIMEKVWEN 186 Query: 182 DEEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTLGEK 219 ++ + SN ++V++ +LR KL +I+TV G GY E+ Sbjct: 187 EKIIKSNVIDVYILYLRNKLKPYGYDRYIQTVPGYGYRFCEE 228 >UniRef50_A0KWE7 Two component transcriptional regulator, winged helix family n=12 Tax=Shewanella RepID=A0KWE7_SHESA Length = 219 Score = 285 bits (732), Expect = 6e-76, Method: Composition-based stats. Identities = 95/218 (43%), Positives = 141/218 (64%), Gaps = 1/218 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRI+L+ED+ L+ GI L+KMG VD + +Q + + + A++LDL LP +G+ Sbjct: 1 MRIMLVEDNELLAQGICLSLAKMGMQVDHLSSYQQALVGIKNETFSAIVLDLGLPDGNGK 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++L+ WR +G P ++LTA ++E L +GADDYL KPF + E+AAR+ A++RR Sbjct: 61 ELLKAWRAEGVSIPTIVLTANTDFDTKLECLDIGADDYLGKPFDVRELAARIRAIVRRQY 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G +N L G + +D R + + + L +EF LL L ++AGRVL+R +E+ Y Sbjct: 121 GLDNNSLNIGALSIDLNTREVSFRDQNVPLSRREFQLLLELAQSAGRVLTRNQLEQLTYG 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE 218 WD EV SN++EVH+HHLR+KL +D I+TV GIGYTL E Sbjct: 181 WD-EVGSNSIEVHIHHLRKKLANDLIKTVRGIGYTLTE 217 >UniRef50_B9XEM3 Two component transcriptional regulator, winged helix family n=1 Tax=bacterium Ellin514 RepID=B9XEM3_9BACT Length = 226 Score = 285 bits (732), Expect = 6e-76, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 122/223 (54%), Gaps = 7/223 (3%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RIL+IED++ + +K L G+ V G +G + + + D V+LD+ +P +DG Sbjct: 3 RILIIEDEVPMRTALKDCLEGEGYRVITAADGEEGLKRVMAEKPDLVLLDVMMPKLDGFA 62 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + E R P+L+LTA+ + +RV GL GADDYL KPF+ E+ AR+ A++RR Sbjct: 63 LCAELRRLANPVPILMLTAKGQIEDRVTGLDAGADDYLVKPFSTDELLARVRAMLRRHQR 122 Query: 122 QASNE--LRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 + LR G V +D K+ A + L KE+A+L LL G +SR+ + ++ Sbjct: 123 EKRAVATLRFGEVEIDMVKQTARRGRKDLHFTAKEYAMLRLLSEAPGEPISRERFLDVVW 182 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLG 217 + T+ V+ H+ LR K+ SD +I+TVHG+GY L Sbjct: 183 GYAAFPTTRTVDNHIASLRAKIESDPEKPRWIKTVHGVGYRLE 225 >UniRef50_D1VIP6 Two component transcriptional regulator, winged helix family n=1 Tax=Frankia sp. EuI1c RepID=D1VIP6_9ACTO Length = 248 Score = 285 bits (731), Expect = 7e-76, Method: Composition-based stats. Identities = 78/222 (35%), Positives = 121/222 (54%), Gaps = 5/222 (2%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKE-ALYSAPYDAVILDLTLPGMDGRD 61 ++++EDD+ + + T L F V + GR+ A AP V++D+ LP +DG + Sbjct: 27 VMVVEDDVNVSYVVATALRLAAFEVVEVSTGREALRVAGGDAPPSLVVMDVMLPDLDGFE 86 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + + G PVL L+AR L +R+ GL GADDYL KPF++ E+ AR+ ++RR Sbjct: 87 VCHRLQACGSDVPVLFLSARGNLDDRLRGLSAGADDYLAKPFSVEELVARIRVILRRRGV 146 Query: 122 -QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 ++ L G + LD R T+ G + L P E+ LL L+RNAGR +SR I + ++ Sbjct: 147 LTEASALTCGALRLDEDARRVTVGGRTIALSPTEYKLLRFLLRNAGRAVSRAQILDHVWD 206 Query: 181 WDEEVTSNAVEVHVHHLRRKLG---SDFIRTVHGIGYTLGEK 219 + + S VE + LR+K+ I TV G+GY L E+ Sbjct: 207 YGFDGESTVVETFISSLRKKVDTAPPTLIHTVRGVGYRLSEE 248 >UniRef50_A9VV65 Two component transcriptional regulator, winged helix family n=24 Tax=Bacillus RepID=A9VV65_BACWK Length = 236 Score = 285 bits (731), Expect = 7e-76, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 117/228 (51%), Gaps = 13/228 (5%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +IL++ED+ I + K L + + V G +G + + D +ILDL +P DG + Sbjct: 3 KILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQPDLIILDLMMPKKDGWE 62 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + E R++ P+++LTA+ +R+ GL +GADDYL KPF+ E+ R++ ++RR N Sbjct: 63 LCGEIRQQSN-VPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGNQ 121 Query: 122 QA-------SNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLI 174 A S + ++ + P R + + L KEF +L ++ ++ +V SR + Sbjct: 122 VAIQAKESLSEVIEFPDLKIYPKTRCVLVCENEVELTVKEFEVLYVMAKHPKQVFSRSQL 181 Query: 175 EEKLYTWDEEVTSNAVEVHVHHLRRKLGS-----DFIRTVHGIGYTLG 217 E ++ + E SN V V V LR KL +I TV GIGY Sbjct: 182 LELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNHWIHTVWGIGYRFE 229 >UniRef50_C0Z6J5 Two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z6J5_BREBN Length = 231 Score = 285 bits (731), Expect = 7e-76, Method: Composition-based stats. Identities = 82/222 (36%), Positives = 116/222 (52%), Gaps = 6/222 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M ILL+EDD +G I+ LS+ +V+W E + YD ILD + G Sbjct: 1 MHILLVEDDPKLGPLIRYKLSQEYHTVEWVADPELVMEYVQQTYYDLYILDWMMQKKSGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR-- 118 ++ E R + P+L+LTARDA+ +RV GL GADDYL KPFA E+ AR+ AL RR Sbjct: 61 ELCEEIRASNDQTPILMLTARDAIDDRVTGLNRGADDYLIKPFAFEELFARIHALTRRIP 120 Query: 119 TNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 + + + LD G+ LTL KEF LL+ +R+ +VL+R I + Sbjct: 121 VSMHQEQTCEYAGITLDRLTHEVYREGQLLTLTKKEFQLLDFFLRHTEKVLTRDQIVNYV 180 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTL 216 + D +T NAV+ + LR+K+ F I V G+GY L Sbjct: 181 WGLDATITPNAVDAAIKLLRKKVDEGFSHKLIHNVRGVGYRL 222 >UniRef50_A4AIS8 Two-component system, regulatory protein n=2 Tax=Actinobacteria (class) RepID=A4AIS8_9ACTN Length = 242 Score = 285 bits (731), Expect = 7e-76, Method: Composition-based stats. Identities = 90/220 (40%), Positives = 124/220 (56%), Gaps = 4/220 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +IL++EDD +G ++ GL G++V T G A + A +D+ LP M G + Sbjct: 20 KILVVEDDAAMGALVQHGLEDDGYAVTLVTNGVDALIATAHENFSAAAIDVMLPEMTGFE 79 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 I R R++G PVL+LTARDA+ +RV GL GADDYL KPFA E AAR+ AL+RR Sbjct: 80 ICRHLRKQGNSLPVLLLTARDAVEDRVLGLDSGADDYLTKPFAFAEFAARIRALVRRDTA 139 Query: 122 QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTW 181 L+ G + LD AT AG PL + KEFALL +L + G L+R I +++ Sbjct: 140 AGKATLKIGELALDAATVRATSAGNPLPMSSKEFALLWMLATHPGEALTRSTILSEVWGT 199 Query: 182 DEEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYTLG 217 + +N V+ +V +LRRKL I TV G+GY L Sbjct: 200 TAHIDANVVDQYVSYLRRKLEPTQSGVTISTVRGVGYALS 239 >UniRef50_C8VW64 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C8VW64_DESAS Length = 229 Score = 285 bits (731), Expect = 8e-76, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 123/224 (54%), Gaps = 9/224 (4%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RIL ++DD I ++ L K GF V + G + + + D VILDL +PGMDG + Sbjct: 4 RILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLMMPGMDGFE 63 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR--- 118 ++ + + + P++IL+AR +RV G R+G DDY KPF+ E+A R++A++RR Sbjct: 64 TYQKLKAQ-REVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVLRRLGE 122 Query: 119 TNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 N L++GN+ LD KR + + L PK+F LL L+ N RV ++ + +K+ Sbjct: 123 PKVNLENMLKYGNLTLDYTKRTVAVNNSKVELTPKQFELLWLMASNPNRVFTKAHLLDKI 182 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLG 217 + N V VH+ LR K+ +D +I+TV G+GY Sbjct: 183 WDSSFYGDDNTVTVHIRRLREKVETDPSNPEYIKTVWGMGYKFE 226 >UniRef50_UPI0001B559F0 two-component system, response regulator n=1 Tax=Streptomyces sp. SPB78 RepID=UPI0001B559F0 Length = 247 Score = 285 bits (731), Expect = 8e-76, Method: Composition-based stats. Identities = 80/224 (35%), Positives = 116/224 (51%), Gaps = 9/224 (4%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 +L++EDD I + T L G++V + GR S D ++LD+ LP DG + Sbjct: 13 VLVVEDDASIRTLLTTALGAAGYTVASASDGRAAVFQAGSRRPDLIVLDVMLPDTDGFRL 72 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQ 122 RE R +G PVL LTAR + +R+ GL G DDY+ KPF + EV R+ A++RR Sbjct: 73 TRELRAQGVYTPVLFLTARAGVEDRITGLSSGGDDYVTKPFHVQEVLLRVRAILRRAGAP 132 Query: 123 AS-----NELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEK 177 AS LR+ + LD AG PL L P EF LL + + RVL + I ++ Sbjct: 133 ASTAPVRPPLRYAGLSLDESTHEVRHAGSPLRLSPTEFRLLACFLAHPERVLEKAEILQR 192 Query: 178 LYTWDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYTLG 217 ++ +D + V+ +V +LRRKL + TV G+GY L Sbjct: 193 VWRYDFSGDTRIVDTYVKNLRRKLDHGGAPALLHTVRGVGYCLR 236 >UniRef50_Q2JED0 Two component transcriptional regulator, winged helix family n=72 Tax=Bacteria RepID=Q2JED0_FRASC Length = 321 Score = 285 bits (731), Expect = 8e-76, Method: Composition-based stats. Identities = 81/223 (36%), Positives = 123/223 (55%), Gaps = 11/223 (4%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 R+L+++DD L+ + + L GF VD G + P D V+LDL LPG+DG + Sbjct: 57 RVLVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAETTPPDLVVLDLMLPGLDGIE 116 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN- 120 + R R + PV++LTAR ++R+ GL +GADDY+ KPF+ E+ R+++++RR N Sbjct: 117 VFRRLRA-HRPVPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRRANE 175 Query: 121 ---GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEK 177 G + LR G +++D R AT G PL L +EF LL L+R GR +R + E Sbjct: 176 TVPGAEAGVLRAGTLVVDAAARTATRHGVPLGLTVREFDLLAFLLRRPGRAFTRGELLEH 235 Query: 178 LYTWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYT 215 ++ W + V VH+ LR K+ D + TV G+GY Sbjct: 236 VWGWSY-GDPSTVTVHIRRLREKIEDDPTAPRMLVTVWGVGYR 277 >UniRef50_B7H0F7 Transcriptional activator protein irlR n=7 Tax=Acinetobacter RepID=B7H0F7_ACIB3 Length = 223 Score = 285 bits (731), Expect = 8e-76, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 126/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL+IED++ I + GL + G+ + G QG E L YD +ILD+ LP ++G Sbjct: 1 MRILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVMLPDIEGW 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L+ R + + PV+ LTA+D + +RV+GL LGADDYL KPF+ IE+ AR+++L+RR Sbjct: 61 SVLQVLR-QFSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQ 119 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 NEL ++ +D G + L EF LL L+ N ++++R+ I +++ Sbjct: 120 YLQENELSISDLKMDLVGHKVWRNGNLIELSKTEFNLLRYLLVNKEQIVTRRQIGSEVWN 179 Query: 181 WDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYTLG 217 + + +N ++V V LR K+ I T+ G+GY + Sbjct: 180 INFDTDTNFIDVAVRRLRSKIDEGYEPKLIHTIRGLGYKIS 220 >UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeobacter violaceus RepID=Q7NGM9_GLOVI Length = 229 Score = 285 bits (731), Expect = 8e-76, Method: Composition-based stats. Identities = 76/220 (34%), Positives = 124/220 (56%), Gaps = 6/220 (2%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 IL++EDD + ++ L G++V GR E +ILDL LP M G ++ Sbjct: 5 ILVVEDDETLAQVLRKTLESEGYTVTLARDGRAALELGREPGLQLIILDLMLPRMSGLEV 64 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQ 122 + R + P+++LTAR ++V GLRLGADDYL KPF + E+ AR+EA++RRT+ Sbjct: 65 CQRLRSENVVTPIIMLTARGLDTDKVFGLRLGADDYLSKPFNIDELLARIEAVLRRTHQS 124 Query: 123 ASNE-LRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTW 181 ++ + G++ +D + + L L +EF +LE L R+AG+ + R+ I ++++ + Sbjct: 125 KPSQHVSVGDLEIDFQRLSVCKNRQKLDLSSREFQVLECLFRSAGQTVDREKIYQEVWGY 184 Query: 182 DEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTL 216 D VT+ ++ H+ LR KL + +I TVHG GY Sbjct: 185 DTAVTNRTIDFHIARLRSKLEDNPKEPRYILTVHGSGYRF 224 >UniRef50_Q38YC7 Two-component system, response regulator (Possibly involved in phosphate regulation) n=12 Tax=Lactobacillales RepID=Q38YC7_LACSS Length = 237 Score = 285 bits (730), Expect = 9e-76, Method: Composition-based stats. Identities = 77/231 (33%), Positives = 124/231 (53%), Gaps = 13/231 (5%) Query: 1 MR-ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDG 59 M+ IL+++D+ I ++ L + F V T G Q +D +ILDL LP +DG Sbjct: 1 MKTILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQKFDFIILDLMLPKLDG 60 Query: 60 RDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 + ++ RE + P++ILTA+D +++ GL +GADDY+ KPF+ E+ AR+ A+ RRT Sbjct: 61 IAVTKKIREAKLKTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIERRT 120 Query: 120 NG-------QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRK 172 QAS + G++ +D + IA L L PKEF LL M +V SR+ Sbjct: 121 TQPIEQPVEQASETIVVGDLSVDETEVIAKKGDHKLHLTPKEFELLVYFMHRLNKVQSRE 180 Query: 173 LIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218 + ++ +D + V++ V HLR K+ + +++TV G GY L + Sbjct: 181 KLLNAVWGFDYPAETRMVDIQVSHLREKIEDNPRHPVYLKTVRGFGYQLED 231 >UniRef50_A6W2Y0 Two component transcriptional regulator, winged helix family n=2 Tax=Oceanospirillales RepID=A6W2Y0_MARMS Length = 223 Score = 285 bits (730), Expect = 9e-76, Method: Composition-based stats. Identities = 94/220 (42%), Positives = 139/220 (63%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL++EDD ++G+ I +S+MG +D G Q + L YD ++LDL LP M G Sbjct: 1 MRILVVEDDRILGEAISQRISRMGHGLDLAQTGLQANQMLALQEYDLMLLDLNLPDMTGN 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 IL+ R+K PV++LTARD + +R+E L LGADDY+ KP E+ AR AL+RR+ Sbjct: 61 QILQTLRKKHSNTPVIVLTARDGIKDRIELLDLGADDYMTKPVDFGELEARCRALLRRSQ 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 GQA N + +GNV L+ T+ G + LK +EF LLE+ + + GRVLS++ + E +Y Sbjct: 121 GQAQNTIEYGNVSLNLQACSVTVDGNLIDLKQREFRLLEVFISHTGRVLSKEALIEHIYN 180 Query: 181 WDEEVTSNAVEVHVHHLRRKL-GSDF-IRTVHGIGYTLGE 218 ++E S+ +E++V LR+ L SD IRT+ G+GY L + Sbjct: 181 FNENPNSSVIEIYVARLRKSLQDSDINIRTIRGLGYLLEK 220 >UniRef50_C5CFK4 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CFK4_KOSOT Length = 226 Score = 285 bits (730), Expect = 9e-76, Method: Composition-based stats. Identities = 78/218 (35%), Positives = 128/218 (58%), Gaps = 2/218 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL+++DD I + +KT + F+V R EAL + P D ++LD+ LP G Sbjct: 1 MKILVVDDDPDILNIVKTACEQECFNVRTANSARNMWEALENDPPDLIVLDIMLPDASGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT- 119 D++++ + K + PV+ LTAR + + + GL LGADDY+ KPF + AR++A+ RR Sbjct: 61 DVIKKLKRKYEEIPVIFLTARKSDLDMILGLELGADDYITKPFNPRTLIARIKAVSRRYE 120 Query: 120 -NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 + N ++ G++ +D G+ L KEF LL+L++ N G+V +R+ I +++ Sbjct: 121 MGPKDRNVVKLGDIEIDMNSYSMIKDGKKEELPRKEFELLKLMIENPGKVFNRQEILDRV 180 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTL 216 + D V+VH+ LR K+GS+FI+TV G+GY L Sbjct: 181 WGMDFFGDFRTVDVHISKLREKIGSEFIKTVRGVGYKL 218 >UniRef50_B8IU63 Two component transcriptional regulator, winged helix family n=20 Tax=Proteobacteria RepID=B8IU63_METNO Length = 225 Score = 285 bits (730), Expect = 1e-75, Method: Composition-based stats. Identities = 98/218 (44%), Positives = 134/218 (61%), Gaps = 4/218 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+ED +G+ I L +G +VDW G G L PYD VILD+ LPG+DG Sbjct: 1 MRILLVEDTQDVGEAIVARLRTLGHAVDWERDGAMGDAVLEVQPYDLVILDVNLPGLDGF 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 IL+ R + R PVL+LTAR + +RV L LGADDYL KPF E+ AR+ AL+RR + Sbjct: 61 AILKRMRARRGRTPVLVLTARSEVDDRVGALDLGADDYLVKPFDFRELEARVRALLRRHS 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G A N + GN+ LD R A++ G+PL L +E+ L+E+L GR+ + + ++L T Sbjct: 121 GHADNAIACGNLSLDRAARSASVGGQPLDLTRREWTLIEILAARPGRIFGKAELLDRLST 180 Query: 181 WDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGY 214 ++EE + NA+E V LRRKL IRT+ G+GY Sbjct: 181 FEEEPSENALEQIVARLRRKLAQAGAEPEIRTLRGLGY 218 >UniRef50_A2SKN3 Two component transcriptional regulator, winged helix family n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SKN3_METPP Length = 266 Score = 285 bits (730), Expect = 1e-75, Method: Composition-based stats. Identities = 90/220 (40%), Positives = 130/220 (59%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M ILL EDD + + L G+ VD +G ++ + PYD +ILD+ L G+DG Sbjct: 38 MHILLAEDDPALAESTARALRSQGWVVDHTPRGEPVPTSVKTDPYDLLILDIGLIGIDGF 97 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + LR RE+G PVL+LTARDA+ +RV GL +GADDYL KPFAL E+ AR++ L RR Sbjct: 98 ETLRRVREQGSTLPVLMLTARDAIEDRVHGLEMGADDYLVKPFALAELIARVKVLTRRHQ 157 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + + L G + +D A + +PL L +E+A+LE L+ G V+ ++ I + + Sbjct: 158 ARQGSVLSMGGLRMDLEANRAWIGEQPLDLSAREWAVLEYLLSRVGHVVGKEQILQAISG 217 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSD--FIRTVHGIGYTLGE 218 WD+ ++ NAVEV+V LR K+ IR V G GY + E Sbjct: 218 WDDALSENAVEVYVSRLRPKIEPAGLRIRAVRGFGYLVEE 257 >UniRef50_D1C5Q5 Two component transcriptional regulator, winged helix family n=52 Tax=Bacteria RepID=D1C5Q5_SPHTD Length = 244 Score = 284 bits (729), Expect = 1e-75, Method: Composition-based stats. Identities = 83/227 (36%), Positives = 124/227 (54%), Gaps = 11/227 (4%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPG-MDGR 60 IL++ED+ I ++ GL G+ V G + +A+ P D +ILD+ LPG +DG Sbjct: 6 HILVVEDERAIASFLRRGLVFEGYRVTVADTGARALDAVRDDPPDLIILDIMLPGDIDGL 65 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARL------EA 114 ++ R R G+ P+L+LTARD +A+RV GL GADDYL KPFA E+ AR+ + Sbjct: 66 EVCRRIRAAGEGMPILMLTARDEVADRVAGLDAGADDYLIKPFAFEELLARVRALLRRQE 125 Query: 115 LMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLI 174 R R ++ LD R A + L +E+ LL L MR+ +VL+R +I Sbjct: 126 RRRAEEPADDGVYRFADLTLDTTSRFAYRGDRRIELTTREYELLLLFMRHPNQVLTRDVI 185 Query: 175 EEKLYTWDEEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYTLG 217 E+++ +D SN +EV+V +LRR L + ++TV G GY L Sbjct: 186 MERVWGYDFPGESNVLEVYVSNLRRHLEAGGEPRLLQTVRGAGYALR 232 >UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bacteria RepID=REGX3_MYCS2 Length = 228 Score = 284 bits (729), Expect = 1e-75, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 126/225 (56%), Gaps = 11/225 (4%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 +L++ED+ + D + L K GF G + D V+LDL LPGM G D+ Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSGTDV 63 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQ 122 ++ R + PV+++TARD+ ++V GL LGADDY+ KP++ E+ AR+ A++RR Sbjct: 64 CKQLRARS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADN 122 Query: 123 ASN-----ELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEK 177 L G V +D + + ++ GEP+TL KEF LLE LMRN+GRVL+R + ++ Sbjct: 123 DDAGADDGVLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRGQLIDR 182 Query: 178 LYTWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLG 217 ++ D + ++VHV LR K+ D + TV G+GY L Sbjct: 183 VWGADYVGDTKTLDVHVKRLRSKIEEDPANPVHLVTVRGLGYKLE 227 >UniRef50_C6Q063 Two component transcriptional regulator, winged helix family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6Q063_9CLOT Length = 367 Score = 284 bits (729), Expect = 1e-75, Method: Composition-based stats. Identities = 76/219 (34%), Positives = 123/219 (56%), Gaps = 4/219 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 + IL+++D+ I + IK GL GF + G + +ILD+ LPG++G Sbjct: 148 IHILVVDDEESIVEFIKMGLEDEGFILHTAFDGYEAISLAKELNPSIIILDIMLPGINGY 207 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++ E +K +++LTA+D + +RV+GL LGADDY+ KPF+ E+ AR+ A +R + Sbjct: 208 EVCSEI-KKWVNASIIMLTAKDDIDDRVKGLDLGADDYMIKPFSFKELLARINARLRNSL 266 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + ++ + GN L+ L L P E+ LL+ L+ N G VLS+ I EK++ Sbjct: 267 PELNDVMSIGNFYLNDKAHEIYFKNNLLELSPTEYNLLKYLLFNNGLVLSKPTILEKVWG 326 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSD---FIRTVHGIGYTL 216 +D N VEV++ +LR K+G + IRTV G+GY + Sbjct: 327 FDFNGDVNIVEVYIRYLRDKIGDNEHSIIRTVRGVGYKV 365 >UniRef50_C8W872 Two component transcriptional regulator, winged helix family n=2 Tax=Atopobium RepID=C8W872_ATOPD Length = 224 Score = 284 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 84/224 (37%), Positives = 125/224 (55%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LL ED+ + I L + + VD T G AL S YD ILD+ +P M G Sbjct: 1 MRVLLAEDEKRMAAAIVALLKQEKYDVDHMTDGASALLALESNMYDIAILDVMMPKMSGF 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++ R+ R KG P+L+LTA+ L ++VEGL GADDYL KPF E+ ARL AL RR++ Sbjct: 61 EVSRKARSKGITIPILMLTAKSQLDDKVEGLDNGADDYLTKPFQTAELLARLRALGRRSS 120 Query: 121 GQASNELRHGNVMLDPGKRIATLA--GEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 N L G++ LD T G+ + L KE +LE ++ N GR+++R + K+ Sbjct: 121 SFQENVLCFGDLSLDSTTATLTCETSGQSVRLSEKELRILEYMIGNHGRIMTRDQLAIKI 180 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYTLGE 218 + ++ + N VEV++ R+KL + I+ V G+GY L + Sbjct: 181 WGFESDAEYNNVEVYMSFTRKKLAFIGSTVEIKAVRGLGYELRD 224 >UniRef50_B0S0W9 Two-component response regulator n=9 Tax=Clostridiales RepID=B0S0W9_FINM2 Length = 238 Score = 284 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 86/218 (39%), Positives = 134/218 (61%), Gaps = 5/218 (2%) Query: 6 IEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILRE 65 +EDD I + I L+ G+ F + K LYS+ D +ILD+ LPG G +IL+E Sbjct: 21 VEDDKSIRELIIYALNNEGYDAMGFGDYGEFKSTLYSSSIDLIILDIMLPGKSGLEILKE 80 Query: 66 WR--EKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN-GQ 122 R EK + PV++LTA+ +++ GL GADDY+ KPF+++E+ AR+ AL+RR++ + Sbjct: 81 IRNNEKTKNIPVMMLTAKTTEYDKIVGLDSGADDYMIKPFSIMELLARVRALLRRSSLSK 140 Query: 123 ASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTWD 182 +++ + N+ LD KR ++ GE + L KEF LL L+ N G+VL+R+ I K++ +D Sbjct: 141 TKSKIIYKNIELDYDKRTVSVDGENVELTYKEFELLYYLLSNVGKVLTRENIMTKIWGFD 200 Query: 183 EEVTSNAVEVHVHHLRRKL--GSDFIRTVHGIGYTLGE 218 E S V+VH+ LR+KL S I+T+ +GY GE Sbjct: 201 FEGESRTVDVHIATLRQKLKNASSIIKTIRNLGYKAGE 238 >UniRef50_Q3Z755 DNA-binding response regulator n=2 Tax=Dehalococcoides RepID=Q3Z755_DEHE1 Length = 225 Score = 283 bits (727), Expect = 2e-75, Method: Composition-based stats. Identities = 83/223 (37%), Positives = 137/223 (61%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M++LLIEDD + I +GL + G++V+W + G+ G E + +D +ILD+ LP +DG Sbjct: 3 MKLLLIEDDANLAKVITSGLEENGYAVNWESNGKLGAEMALAYTFDVIILDIMLPELDGF 62 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + + R G + P+++LTAR A++V GL GADDYL KPF+ E+ ARL AL+RR N Sbjct: 63 AVCHKIRSNGNQTPIIMLTARYQEADKVNGLNCGADDYLVKPFSFPELLARLRALLRRAN 122 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 Q S ++ + L+ R A G + L KE+ +LE L+ N ++++ +IEE ++ Sbjct: 123 NQHSPSIKLRKLTLNTVDRRAFYDGREIELTAKEYGILEYLVLNKNCIITKNMIEEHIWE 182 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYTLGEK 219 + ++ SN +EV + +R+KL ++ I+TV G+GY + +K Sbjct: 183 SESDIFSNVIEVLISRIRKKLDNNNKNSLIKTVKGLGYIIEDK 225 >UniRef50_P35163 Transcriptional regulatory protein resD n=162 Tax=Bacteria RepID=RESD_BACSU Length = 240 Score = 283 bits (727), Expect = 2e-75, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 118/230 (51%), Gaps = 15/230 (6%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +IL+++D+ I ++ L + +++D G + A YD ++LDL +PG DG + Sbjct: 8 KILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIE 67 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + R+ REK P+++LTA+ A RV+G G DDY+ KPF+ EV R++AL+RR + Sbjct: 68 VCRQIREKK-ATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 126 Query: 122 Q--------ASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKL 173 N L ++ +D T G ++L PKE+ LL L + +V R+ Sbjct: 127 TSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREK 186 Query: 174 IEEKLYTWDEEVTSNAVEVHVHHLRRKL------GSDFIRTVHGIGYTLG 217 + ++++ ++ V+ HV LR KL + I TV G+GY Sbjct: 187 LLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFE 236 >UniRef50_C1F2N1 DNA-binding response regulator n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F2N1_ACIC5 Length = 230 Score = 283 bits (727), Expect = 2e-75, Method: Composition-based stats. Identities = 89/221 (40%), Positives = 128/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKM-GFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDG 59 MRIL++ED+ + I + + G++VD G G++ YD V+LDL LPG+DG Sbjct: 1 MRILVVEDEERLAGNIAAAMREGPGWAVDLAHSGLAGRDLCLQTEYDLVLLDLMLPGLDG 60 Query: 60 RDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 +LR+ R KG PVL+LTA A +E L GADDYL KPF L E+ AR +AL+RR Sbjct: 61 LGVLRDMRGKGIATPVLVLTAVAEKASVIELLNAGADDYLAKPFDLGELLARAKALIRRG 120 Query: 120 NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 G + + G ++LD ++ T G P+ L P E+ +LE L V+S++ + E LY Sbjct: 121 KGVSHPVINIGALVLDTVEKSVTCHGIPIELSPTEYRVLEFLGHRPRSVVSKQTLLEHLY 180 Query: 180 TWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 216 ++ E SN +E H+ +LRRKL G +I T+ G GY L Sbjct: 181 DYNWEHHSNVIEAHISNLRRKLNQQEGDAWIETLRGRGYRL 221 >UniRef50_B2V7Q1 Two component transcriptional regulator, winged helix family n=3 Tax=Hydrogenothermaceae RepID=B2V7Q1_SULSY Length = 231 Score = 283 bits (727), Expect = 2e-75, Method: Composition-based stats. Identities = 77/221 (34%), Positives = 124/221 (56%), Gaps = 8/221 (3%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 I +IEDD I + + K GF V F G+ E + D V+LDL +P +DG + Sbjct: 4 IYVIEDDEDINELLTYNFKKEGFDVRSFPNGKVAFEHIKQEKPDIVVLDLMMPEVDGLEF 63 Query: 63 LREWREKGQ--REPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + R + P+++LTA+ +++ GL LGADDY+ KPF+ E+ AR++AL+RR+ Sbjct: 64 CKLVRSDKELEHIPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKALLRRSK 123 Query: 121 ----GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEE 176 A E + G++ + P K T+ G+P+ L +F LL L+ + G+VLSR I E Sbjct: 124 SLHFPTAKPEYKFGDLKISPEKFEVTIKGQPVHLTTTQFKLLLALVNSQGKVLSRDYIIE 183 Query: 177 KLYTWDEEVTSNAVEVHVHHLRRKLGS--DFIRTVHGIGYT 215 ++ WD++V ++VH+ LR L + I+T+ G+GY Sbjct: 184 HVWAWDKDVYDRTIDVHIKKLRELLKEYGNCIKTIRGVGYK 224 >UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z5U8_BREBN Length = 261 Score = 283 bits (726), Expect = 2e-75, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 128/227 (56%), Gaps = 11/227 (4%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M++L+ +DD + + I+ K + T GR+ E + D VILD+ +P +DG Sbjct: 33 MKVLVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVMMPQLDGF 92 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + RE R+K P+++LTA+D +RV GL LGADDY+ KPF+ E+ AR+ A+MRR Sbjct: 93 EACREIRKK-WDTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMRRLQ 151 Query: 121 GQASNE-------LRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKL 173 + E + +D KR +AGE ++ +PKEF LL L+++ G V SR+ Sbjct: 152 PKPKVEDEAALRTFVFEQLTIDLDKREVIVAGEKVSFRPKEFDLLVQLVKSPGSVWSREQ 211 Query: 174 IEEKLYTWDEEVTSNAVEVHVHHLRR---KLGSDFIRTVHGIGYTLG 217 + E+++ +D ++VH+ +R+ KL D I+TV GIGY G Sbjct: 212 LLEQVWGFDYFGDVRTIDVHIKKIRQRLDKLPYDCIQTVWGIGYKFG 258 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q2JAC4 Two component transcriptional regulator, winged ... 338 1e-91 UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax... 337 2e-91 UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC... 336 3e-91 UniRef50_C5CE19 Two component transcriptional regulator, winged ... 335 6e-91 UniRef50_B8DZ94 Two component transcriptional regulator, winged ... 335 9e-91 UniRef50_B5JD22 Response regulator receiver domain protein n=1 T... 333 2e-90 UniRef50_C8WRL2 Two component transcriptional regulator, winged ... 332 5e-90 UniRef50_C7NAQ8 Two component transcriptional regulator, winged ... 327 1e-88 UniRef50_UPI0001C16F99 Multi-component Transcriptional regulator... 327 2e-88 UniRef50_B2J1E6 Multi-component transcriptional regulator, winge... 327 2e-88 UniRef50_B1ZVS5 Two component transcriptional regulator, winged ... 326 3e-88 UniRef50_Q2SPE2 Response regulator consisting of a CheY-like rec... 325 5e-88 UniRef50_B2IXN9 Multi-component transcriptional regulator, winge... 325 5e-88 UniRef50_A0RG02 Two-component response regulator n=92 Tax=Bacter... 325 6e-88 UniRef50_B7K7W8 Multi-component transcriptional regulator, winge... 325 7e-88 UniRef50_A7ZEI3 Transcriptional activator protein CopR n=9 Tax=B... 324 1e-87 UniRef50_C5NUZ8 Response regulator ArlR n=4 Tax=Bacteria RepID=C... 323 2e-87 UniRef50_A6WIX6 Two component transcriptional regulator, winged ... 323 3e-87 UniRef50_B7K2S9 Two component transcriptional regulator, winged ... 323 3e-87 UniRef50_B4WME0 Response regulator receiver domain protein n=1 T... 323 3e-87 UniRef50_Q3B3K7 Two component transcriptional regulator, winged ... 323 4e-87 UniRef50_A4SHT1 Two-component system response regulator n=10 Tax... 322 4e-87 UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacter... 322 5e-87 UniRef50_B9XE94 Two component transcriptional regulator, winged ... 322 6e-87 UniRef50_B8HL49 Multi-component transcriptional regulator, winge... 322 7e-87 UniRef50_D2QKB6 Two component transcriptional regulator, winged ... 321 1e-86 UniRef50_Q3MGM2 Sensor protein n=22 Tax=Bacteria RepID=Q3MGM2_ANAVT 320 1e-86 UniRef50_Q2IUG0 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_P39663 Alkaline phosphatase synthesis transcriptional r... 320 2e-86 UniRef50_Q21EC1 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_D1BPS5 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_A8ZNT0 Two-component transcriptional regulator/diguanyl... 320 2e-86 UniRef50_B4WMF1 Response regulator receiver domain protein n=2 T... 320 2e-86 UniRef50_Q026B5 Two component heavy metal response transcription... 320 2e-86 UniRef50_B5VWD3 Multi-component transcriptional regulator, winge... 320 3e-86 UniRef50_C6QDD0 Two component transcriptional regulator, winged ... 320 3e-86 UniRef50_C4XS15 OmpR family two-component response regulator n=2... 319 3e-86 UniRef50_B2A1Z8 Two component transcriptional regulator, winged ... 319 4e-86 UniRef50_B2JBG7 Two component transcriptional regulator, winged ... 319 4e-86 UniRef50_B9KBQ0 Response regulator n=6 Tax=Thermotogaceae RepID=... 319 4e-86 UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria... 319 4e-86 UniRef50_P52076 Transcriptional regulatory protein qseB n=74 Tax... 318 6e-86 UniRef50_A4VI02 DNA-binding response regulator n=12 Tax=Proteoba... 318 9e-86 UniRef50_O34903 Uncharacterized transcriptional regulatory prote... 318 9e-86 UniRef50_O07776 Transcriptional regulatory protein tcrA n=21 Tax... 318 1e-85 UniRef50_B8G179 Two component transcriptional regulator, winged ... 318 1e-85 UniRef50_UPI00016B25CE two component transcriptional regulator, ... 318 1e-85 UniRef50_D2BG66 DNA-binding response regulator, two-component sy... 317 1e-85 UniRef50_C7PP48 Two component transcriptional regulator, winged ... 317 2e-85 UniRef50_Q01473 Protein rcaC n=1 Tax=Fremyella diplosiphon RepID... 317 2e-85 UniRef50_D2QX61 Two component transcriptional regulator, winged ... 317 2e-85 UniRef50_A4J2J4 Two component transcriptional regulator, winged ... 317 2e-85 UniRef50_B4WPA6 Response regulator receiver domain protein n=1 T... 317 2e-85 UniRef50_C7LY45 Two component transcriptional regulator, winged ... 316 4e-85 UniRef50_Q1AZL3 Two component transcriptional regulator, winged ... 314 1e-84 UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional r... 314 1e-84 UniRef50_A6CDX9 Two component transcriptional regulator, winged ... 314 1e-84 UniRef50_C7N0N0 Response regulator with CheY-like receiver domai... 314 1e-84 UniRef50_B1YK44 Two component transcriptional regulator, winged ... 314 2e-84 UniRef50_B2IZ13 Sensor protein n=11 Tax=Cyanobacteria RepID=B2IZ... 314 2e-84 UniRef50_A6X2C4 Two component transcriptional regulator, winged ... 313 3e-84 UniRef50_UPI00017468BB two component transcriptional regulator, ... 313 3e-84 UniRef50_B4WG55 Response regulator receiver domain protein n=1 T... 313 3e-84 UniRef50_D1B9J7 Two component transcriptional regulator, winged ... 312 4e-84 UniRef50_Q1IVX4 Two component transcriptional regulator, winged ... 312 4e-84 UniRef50_P94413 Uncharacterized transcriptional regulatory prote... 312 5e-84 UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6V... 312 5e-84 UniRef50_B5W2T9 Multi-component transcriptional regulator, winge... 312 6e-84 UniRef50_Q0ASG1 Two component transcriptional regulator, winged ... 312 8e-84 UniRef50_Q1IUY4 Two component transcriptional regulator, winged ... 311 9e-84 UniRef50_A0PWB4 Response regulator mprA n=284 Tax=Bacteria RepID... 311 1e-83 UniRef50_A7GKH0 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_P66796 Transcriptional regulatory protein qseB n=58 Tax... 310 2e-83 UniRef50_Q88JD6 DNA-binding response regulator n=6 Tax=Gammaprot... 310 2e-83 UniRef50_Q3SMF6 Two component Transcriptional regulator, Winged ... 310 2e-83 UniRef50_D2PLZ1 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostri... 310 2e-83 UniRef50_Q8DHN5 Two-component response regulator n=2 Tax=Chrooco... 310 2e-83 UniRef50_B8HQE6 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_B6J7N7 Transcriptional regulatory protein n=8 Tax=Gamma... 310 2e-83 UniRef50_C0QL69 Transcriptional regulatory protein n=1 Tax=Desul... 310 3e-83 UniRef50_C7PAJ7 Two component transcriptional regulator, winged ... 310 3e-83 UniRef50_C6CZ95 Two component transcriptional regulator, winged ... 310 3e-83 UniRef50_A5UWJ8 Two component transcriptional regulator, winged ... 309 4e-83 UniRef50_A1HRL8 Two component transcriptional regulator, winged ... 309 4e-83 UniRef50_B3QW38 Two component transcriptional regulator, winged ... 309 5e-83 UniRef50_C0GHG5 Two component transcriptional regulator, winged ... 309 5e-83 UniRef50_C0ZDC3 Two-component response regulator n=1 Tax=Breviba... 309 5e-83 UniRef50_B8G869 Two component transcriptional regulator, winged ... 308 6e-83 UniRef50_B2A0K7 Two component transcriptional regulator, winged ... 308 6e-83 UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate reg... 308 6e-83 UniRef50_B4B6S6 Multi-component transcriptional regulator, winge... 308 7e-83 UniRef50_B4VMC7 Response regulator receiver domain protein n=1 T... 308 7e-83 UniRef50_C6VX71 Two component transcriptional regulator, winged ... 308 9e-83 UniRef50_A0LPJ2 Two component transcriptional regulator, winged ... 308 1e-82 UniRef50_Q2RPG3 Two component transcriptional regulator, winged ... 308 1e-82 UniRef50_A8LHM5 Two component transcriptional regulator, winged ... 308 1e-82 UniRef50_D1VF89 Two component transcriptional regulator, winged ... 307 1e-82 UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actino... 307 2e-82 UniRef50_B4WSX3 Response regulator receiver domain protein n=1 T... 307 2e-82 UniRef50_C7MME5 Response regulator with CheY-like receiver domai... 307 2e-82 UniRef50_Q20YF2 Two component transcriptional regulator, winged ... 307 2e-82 UniRef50_A9VV65 Two component transcriptional regulator, winged ... 307 2e-82 UniRef50_B8H4H9 Two-component response regulator protein n=9 Tax... 307 3e-82 UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mits... 306 3e-82 UniRef50_Q44006 Transcriptional activator protein czcR n=330 Tax... 306 4e-82 UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacter... 306 4e-82 UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B... 305 5e-82 UniRef50_C6J181 Two-component system response regulator n=1 Tax=... 305 5e-82 UniRef50_P35163 Transcriptional regulatory protein resD n=162 Ta... 305 5e-82 UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional r... 305 6e-82 UniRef50_C7ND40 Two component transcriptional regulator, winged ... 305 6e-82 UniRef50_B1VIL1 Two-component system response regulator n=3 Tax=... 305 7e-82 UniRef50_A5EYW4 Transcriptional regulator n=31 Tax=Bacteria RepI... 305 7e-82 UniRef50_A5FEG3 Two-component transcriptional regulator, winged ... 305 8e-82 UniRef50_Q1AZ24 Two component transcriptional regulator, winged ... 305 8e-82 UniRef50_Q12PS6 Two component transcriptional regulator, winged ... 305 8e-82 UniRef50_D2RAW2 Response regulator receiver domain protein n=3 T... 305 9e-82 UniRef50_A4CE30 Probable two-component response regulator transc... 305 9e-82 UniRef50_C5D3X1 Two component transcriptional regulator, winged ... 304 1e-81 UniRef50_A7HL55 Two component transcriptional regulator, winged ... 304 1e-81 UniRef50_B1HZW1 Transcriptional regulatory protein cutR (Defecti... 304 1e-81 UniRef50_C9NWS1 DNA-binding heavy metal response regulator n=1 T... 304 1e-81 UniRef50_Q15Y65 Two component transcriptional regulator, winged ... 304 1e-81 UniRef50_Q97LA9 Response regulator (CheY-like receiver domain an... 304 1e-81 UniRef50_A6CWR0 Two-component system response regulator (Pho fam... 304 1e-81 UniRef50_A0KN62 DNA-binding response regulator n=41 Tax=Gammapro... 304 2e-81 UniRef50_Q2G7V2 Two component transcriptional regulator, winged ... 304 2e-81 UniRef50_Q8A9Y3 Two-component system response regulator n=8 Tax=... 303 2e-81 UniRef50_A4AF30 Two component transcriptional regulator, winged ... 303 2e-81 UniRef50_Q99U73 Response regulator arlR n=10 Tax=Firmicutes RepI... 303 2e-81 UniRef50_C9Z8Q7 Putative two-component response regulator n=1 Ta... 303 3e-81 UniRef50_A5VEY8 Two component transcriptional regulator, winged ... 303 3e-81 UniRef50_A3QGG3 Two component transcriptional regulator, winged ... 303 3e-81 UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=... 303 3e-81 UniRef50_B4WP26 Response regulator receiver domain protein n=1 T... 303 4e-81 UniRef50_C8VW64 Two component transcriptional regulator, winged ... 303 4e-81 UniRef50_Q2S8G9 Response regulator consisting of a CheY-like rec... 302 4e-81 UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candi... 302 4e-81 UniRef50_Q83N47 Two-component system response regulator n=8 Tax=... 302 5e-81 UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=... 302 5e-81 UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Ta... 302 5e-81 UniRef50_B5D1V8 Putative uncharacterized protein n=2 Tax=Bactero... 302 5e-81 UniRef50_B0C620 Two component transcriptional regulator, winged ... 302 6e-81 UniRef50_B0KKE4 Two component transcriptional regulator, winged ... 302 6e-81 UniRef50_B1ZS16 Two component transcriptional regulator, winged ... 301 7e-81 UniRef50_C5D2L7 Two component transcriptional regulator, winged ... 301 8e-81 UniRef50_C1SIE7 Response regulator with CheY-like receiver domai... 301 9e-81 UniRef50_Q2T4E0 DNA-binding response regulator n=76 Tax=Bacteria... 301 9e-81 UniRef50_Q38YC7 Two-component system, response regulator (Possib... 301 1e-80 UniRef50_B8G7R1 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_Q48H36 DNA-binding response regulator n=6 Tax=Gammaprot... 301 1e-80 UniRef50_A5UPS1 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_C8KZR7 Two component transcriptional regulator n=5 Tax=... 301 1e-80 UniRef50_A5WDA5 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_B5JI66 Response regulator receiver domain protein n=1 T... 301 1e-80 UniRef50_A9AWM9 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_C0YVQ4 Response regulator n=1 Tax=Chryseobacterium gleu... 300 2e-80 UniRef50_Q2RYR0 Response regulator receiver domain protein n=2 T... 300 2e-80 UniRef50_C6CWW2 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_Q6AQP4 Probable two-component system response regulator... 300 2e-80 UniRef50_B2JHN0 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_B2HUW9 Response regulator consisting of a CheY-like rec... 300 3e-80 UniRef50_A0YP32 Two-component response regulator n=1 Tax=Lyngbya... 300 3e-80 UniRef50_Q49XM7 Response regulator arlR n=145 Tax=Bacteria RepID... 300 3e-80 UniRef50_C0VPI8 Two-component response regulator n=4 Tax=Acineto... 299 3e-80 UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 299 4e-80 UniRef50_B4U9M6 Two component transcriptional regulator, winged ... 299 4e-80 UniRef50_Q6FA81 Putative two-component response regulator n=1 Ta... 299 4e-80 UniRef50_C8PY86 DNA-binding response regulator n=1 Tax=Enhydroba... 299 4e-80 UniRef50_C6Q063 Two component transcriptional regulator, winged ... 299 4e-80 UniRef50_C0Z5X8 Two-component response regulator n=143 Tax=Firmi... 299 4e-80 UniRef50_Q2JED0 Two component transcriptional regulator, winged ... 299 5e-80 UniRef50_A8F5W8 Two component transcriptional regulator, winged ... 299 5e-80 UniRef50_C7IFX1 Two component transcriptional regulator, winged ... 299 5e-80 UniRef50_UPI0001C16C1D manR (Two component Transcriptional regul... 298 6e-80 UniRef50_B4RXL0 Response regulator n=2 Tax=Gammaproteobacteria R... 298 6e-80 UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicu... 298 7e-80 UniRef50_Q1LCD6 Two component transcriptional regulator, winged ... 298 8e-80 UniRef50_C8WKQ8 Two component transcriptional regulator, winged ... 298 8e-80 UniRef50_A9H3V0 Two component Transcriptional regulator n=96 Tax... 298 9e-80 UniRef50_UPI00016C506D two component transcriptional regulator, ... 298 9e-80 UniRef50_B8CXQ9 Two component transcriptional regulator, winged ... 298 9e-80 UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Ta... 298 1e-79 UniRef50_Q2T1W7 DNA-binding response regulator n=22 Tax=Proteoba... 298 1e-79 UniRef50_A9BP99 Two component transcriptional regulator, winged ... 298 1e-79 UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bact... 297 1e-79 UniRef50_Q2BR69 Two component Transcriptional regulator, Winged ... 297 1e-79 UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=... 297 1e-79 UniRef50_Q0I8A9 DNA-binding response regulator n=13 Tax=Cyanobac... 297 2e-79 UniRef50_UPI0001B559F0 two-component system, response regulator ... 297 2e-79 UniRef50_D1C5Q5 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6... 296 2e-79 UniRef50_P45606 Phosphate regulon transcriptional regulatory pro... 296 2e-79 UniRef50_Q3MAE8 Response regulator receiver modulated diguanylat... 296 3e-79 UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria ... 296 3e-79 UniRef50_B7H0F7 Transcriptional activator protein irlR n=7 Tax=A... 296 3e-79 UniRef50_Q6F8E2 Transcriptional regulator n=19 Tax=Acinetobacter... 296 3e-79 UniRef50_D2SFJ3 Two component transcriptional regulator, winged ... 296 3e-79 UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteri... 296 4e-79 UniRef50_Q030C5 DNA-binding response regulator, OmpR family (Rec... 296 4e-79 UniRef50_C1ZD82 Response regulator with CheY-like receiver domai... 296 4e-79 UniRef50_Q81I47 Two-component response regulator n=76 Tax=Firmic... 296 4e-79 UniRef50_Q12T20 Two component transcriptional regulator, winged ... 296 4e-79 UniRef50_P76340 Probable transcriptional regulatory protein yedW... 296 5e-79 UniRef50_Q3M194 Multi-component transcriptional regulator, winge... 296 5e-79 UniRef50_C6D6P8 Two component transcriptional regulator, winged ... 296 5e-79 UniRef50_D1C280 Two component transcriptional regulator, winged ... 295 5e-79 UniRef50_P30843 Transcriptional regulatory protein basR n=126 Ta... 295 5e-79 UniRef50_B9XEM3 Two component transcriptional regulator, winged ... 295 5e-79 UniRef50_A9HHL1 Probable two-component response regulator transc... 295 5e-79 UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 ... 295 6e-79 UniRef50_A6TT79 Two component transcriptional regulator, winged ... 295 7e-79 UniRef50_C7MDU8 Response regulator with CheY-like receiver domai... 295 7e-79 UniRef50_A6W7C9 Two component transcriptional regulator, winged ... 295 7e-79 UniRef50_C1ABP4 OmpR family two-component response regulator n=2... 295 7e-79 UniRef50_C5CFK4 Two component transcriptional regulator, winged ... 295 8e-79 UniRef50_C6VUR1 Two component transcriptional regulator, winged ... 295 8e-79 UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Acti... 295 8e-79 UniRef50_C0Z6J5 Two-component response regulator n=1 Tax=Breviba... 295 9e-79 UniRef50_A1V147 DNA-binding response regulator n=182 Tax=cellula... 295 9e-79 UniRef50_A9BQG9 Two component transcriptional regulator, winged ... 295 9e-79 UniRef50_Q02A31 Two component transcriptional regulator, winged ... 295 1e-78 UniRef50_B4B5Q6 Response regulator receiver modulated diguanylat... 295 1e-78 UniRef50_C9ZA01 Putative two-component system response regulator... 295 1e-78 UniRef50_D1VIP6 Two component transcriptional regulator, winged ... 294 1e-78 UniRef50_A0KCT7 Two component transcriptional regulator, winged ... 294 1e-78 UniRef50_C8W041 Two component transcriptional regulator, winged ... 294 1e-78 UniRef50_B2V7Q1 Two component transcriptional regulator, winged ... 294 1e-78 UniRef50_A5FBX2 Two component transcriptional regulator, winged ... 294 1e-78 UniRef50_UPI0001C425A1 two component transcriptional regulator, ... 294 1e-78 UniRef50_B8FYB6 Two component transcriptional regulator, winged ... 294 1e-78 UniRef50_A9AYH1 Two component transcriptional regulator, winged ... 294 1e-78 UniRef50_C6CH89 Two component transcriptional regulator, winged ... 294 2e-78 UniRef50_B4CW77 Two component transcriptional regulator, winged ... 294 2e-78 UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillu... 294 2e-78 UniRef50_A6TPN8 Two component transcriptional regulator, winged ... 294 2e-78 UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus... 294 2e-78 UniRef50_C4L340 Two component transcriptional regulator, winged ... 293 2e-78 UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobact... 293 2e-78 UniRef50_Q2JX56 DNA-binding response regulator n=29 Tax=Cyanobac... 293 2e-78 UniRef50_Q47456 Transcriptional regulatory protein pcoR n=99 Tax... 293 2e-78 UniRef50_Q0HYY3 Two component transcriptional regulator, winged ... 293 2e-78 UniRef50_C6LI81 DNA-binding response regulator DltR n=2 Tax=Clos... 293 2e-78 UniRef50_A4AIS8 Two-component system, regulatory protein n=2 Tax... 293 2e-78 UniRef50_A6M1X5 Two component transcriptional regulator, winged ... 293 3e-78 UniRef50_B8FSL6 Two component transcriptional regulator, winged ... 293 3e-78 UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeoba... 293 4e-78 Sequences not found previously or not previously below threshold: UniRef50_A9KR75 Two component transcriptional regulator, winged ... 301 9e-81 UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C... 295 8e-79 >UniRef50_Q2JAC4 Two component transcriptional regulator, winged helix family n=90 Tax=cellular organisms RepID=Q2JAC4_FRASC Length = 283 Score = 338 bits (868), Expect = 1e-91, Method: Composition-based stats. Identities = 94/221 (42%), Positives = 133/221 (60%), Gaps = 4/221 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L++ED+ ++ GL + G++VD G YDA++LDL LPG+DG Sbjct: 30 MRVLVVEDEARTAALLRRGLVEEGYAVDVVGDGADAVWQATEIGYDAIVLDLMLPGLDGF 89 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++ R RE G+ PVL+LTAR + +R+ GL GADDYL KPF+ E+ ARL AL+RR Sbjct: 90 EVCRRLREAGRWAPVLMLTARGDVDDRIRGLDAGADDYLPKPFSFGELTARLRALVRRGA 149 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + LR G++ LDP + AG PL L KEFALL LLMR+ VL+R I + ++ Sbjct: 150 VERPTVLRIGDLRLDPAEHRVLRAGSPLDLSAKEFALLHLLMRHPDEVLTRTYIVDHVWD 209 Query: 181 WDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTLG 217 + + TSN V+ +V ++RRK+ G I TV G+GY L Sbjct: 210 FAFDGTSNIVDQYVRYVRRKIDIPDGPSLIETVRGVGYRLR 250 >UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax=Cyanobacteria RepID=B1WRX4_CYAA5 Length = 225 Score = 337 bits (865), Expect = 2e-91, Method: Composition-based stats. Identities = 80/220 (36%), Positives = 128/220 (58%), Gaps = 4/220 (1%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 IL++ED++ + I+ L G++V G G + D ++LD LPG+ G DI Sbjct: 6 ILVVEDEVKLAQFIELELKYEGYTVTVVNDGLSGLTTARESNPDLILLDWMLPGISGLDI 65 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQ 122 + R+ G + P+++LTA+D +++RV GL GADDY+ KPF L E+ AR+ A +RR + + Sbjct: 66 CKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNHEE 125 Query: 123 ASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTWD 182 + L+ ++ L+ R + L KEF LLE LM + +VLSR I E+++ +D Sbjct: 126 DPDLLQFLDLSLNRNTREVFRGSRLIELTAKEFDLLEYLMSHPKQVLSRDQILERVWGYD 185 Query: 183 EEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYTLGE 218 SN +EV+V +LR KL ++ I+TV G+GY L + Sbjct: 186 FMGDSNIIEVYVRYLRLKLEAEQEKRLIQTVRGVGYVLRD 225 >UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC-wHTH domains) n=6 Tax=Bacteria RepID=B3DZZ9_METI4 Length = 268 Score = 336 bits (864), Expect = 3e-91, Method: Composition-based stats. Identities = 87/221 (39%), Positives = 137/221 (61%), Gaps = 4/221 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L++ED++ I I L + GF+VD ++G + + + PYDA +LD+ LPG DG Sbjct: 46 MRVLVVEDELKIARFISRALEEEGFTVDCCSRGDEALLMMLATPYDAAVLDIMLPGPDGI 105 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +LR RE+G P+L+L+AR +++EGL GADDYL KPF++ E+ ARL AL+RRT Sbjct: 106 SVLRSLRERGISLPILLLSARSETRDKIEGLNSGADDYLPKPFSMDELVARLRALIRRTA 165 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G + + GN+ L+ R + + L KEF++LELLMR GRV +R + E+++ Sbjct: 166 GIGLSVYKVGNLTLNLLTREVFRGQKKIELTAKEFSILELLMRTPGRVFTRTQVCERVWN 225 Query: 181 WDEEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTLG 217 + + +N V+V++ LR+K+ I+TV G+GY + Sbjct: 226 YHFDPGTNLVDVYIQKLRKKIDEGEEQKLIQTVRGVGYKIE 266 >UniRef50_C5CE19 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CE19_KOSOT Length = 228 Score = 335 bits (861), Expect = 6e-91, Method: Composition-based stats. Identities = 98/224 (43%), Positives = 139/224 (62%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL++ED+ + + IK L GF VD G +G + S YD +ILD+ LPGM G Sbjct: 1 MKILVVEDNKKLAENIKKYLELEGFIVDLAYDGNEGLDLALSYNYDCIILDIILPGMSGI 60 Query: 61 DILREWR-EKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 +I R R E+ + P+L+LTA ++ RVEGL +GADDY+ KPF L E+ AR+ AL+RR Sbjct: 61 EICRFLRDEEKSQVPILMLTALGSVENRVEGLNVGADDYMPKPFDLRELVARVRALIRRN 120 Query: 120 NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 L++G+++++ R + GEPL L KEF+LLEL MRN G V SR+ I +KL+ Sbjct: 121 QVVRQETLKYGDLVMNLQTREVSCKGEPLNLSSKEFSLLELFMRNPGVVFSREQILDKLW 180 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTLGEK 219 E SN V+V+V +LR+KL + I TVH IGY L ++ Sbjct: 181 ESGFEPRSNIVDVYVLYLRKKLKPFGYDEKIETVHNIGYRLKKE 224 >UniRef50_B8DZ94 Two component transcriptional regulator, winged helix family n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8DZ94_DICTD Length = 224 Score = 335 bits (860), Expect = 9e-91, Method: Composition-based stats. Identities = 84/224 (37%), Positives = 132/224 (58%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYS--APYDAVILDLTLPGMD 58 M+IL+IED+ +G +K GL K G+ VD G + K + + YD VILD+ LP +D Sbjct: 1 MKILIIEDEKKLGTALKKGLEKEGYVVDLAFDGEEAKYIIENNFEGYDLVILDIMLPKID 60 Query: 59 GRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR 118 G + ++ R K + P+L+LTA+D + +++ GL GADDYL KPF+ E+ AR+ AL+RR Sbjct: 61 GISLCKDLRAKNFQAPILMLTAKDKVEDKILGLESGADDYLVKPFSYEELLARIRALLRR 120 Query: 119 TNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 L+ ++ LD + + L KEFA+LE LMRN R++S++ I + Sbjct: 121 PKNLMPTVLKVKDISLDTVSKRVFRGDIEILLTNKEFAILEYLMRNVNRIISKEQIISHV 180 Query: 179 YTWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTLGE 218 + ++ + SN VE H+ +LR+KL + I T+ G+GY + E Sbjct: 181 WGYESDTLSNVVEAHIKNLRKKLERKRDENIIETIRGMGYRIKE 224 >UniRef50_B5JD22 Response regulator receiver domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JD22_9BACT Length = 239 Score = 333 bits (856), Expect = 2e-90, Method: Composition-based stats. Identities = 91/223 (40%), Positives = 140/223 (62%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M++LL+ED+ I D + GL + G+ V+ G G S YD ++LD+ LPG DG Sbjct: 17 MKVLLVEDEKKISDFVVRGLKEQGYVVELAEDGEDGYIHATSQSYDVIVLDIMLPGRDGL 76 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 IL+ R+ G PV+++TAR L ER+EGL LGADDYL KPF L E+ AR++AL RR++ Sbjct: 77 SILKSLRKSGNTVPVILVTARGELDERLEGLNLGADDYLTKPFYLDELIARIQALHRRSS 136 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G++ + ++ G+++++ R GE + L +EF LLE LMR+ GRVL+R I E ++ Sbjct: 137 GKSLSMMQVGDLVVNLSTREVRRDGELVELTTREFNLLEYLMRSPGRVLTRTQILEHVWG 196 Query: 181 WDEEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTLGEK 219 +D + ++N V+V V LR+K+ + I TV G GY + ++ Sbjct: 197 YDFDPSTNVVDVCVQRLRKKVDAGHDVHLIETVRGAGYRMRKE 239 >UniRef50_C8WRL2 Two component transcriptional regulator, winged helix family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRL2_ALIAD Length = 231 Score = 332 bits (853), Expect = 5e-90, Method: Composition-based stats. Identities = 98/221 (44%), Positives = 133/221 (60%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+ED++ + +K L + ++VD G G + + YD ILD+ LP M G Sbjct: 1 MRILLVEDEVRLASALKQLLKEHQYAVDVAHDGETGCDLALTDSYDLAILDIMLPKMSGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 DILR R+ G + PVL+LTA+D + +RV GL GADDYL KPF E+ AR+ AL RRT Sbjct: 61 DILRAMRKAGLQTPVLLLTAKDTVEDRVTGLDAGADDYLVKPFDNKELLARVRALSRRTG 120 Query: 121 GQA-SNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 A + + G LD R T GEPL L KEF LLEL MRN +VLS+++I ++++ Sbjct: 121 QIAGGDAIEAGPFRLDLNTRTVTRNGEPLALTAKEFQLLELFMRNPNKVLSKEVILDRVW 180 Query: 180 TWDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYTL 216 D +V NAVE +VH LR+K+ +I TV G+GY Sbjct: 181 GPDADVIGNAVENYVHFLRKKIDEPDLPSYITTVRGVGYMF 221 >UniRef50_C7NAQ8 Two component transcriptional regulator, winged helix family n=10 Tax=Bacteria RepID=C7NAQ8_LEPBD Length = 227 Score = 327 bits (841), Expect = 1e-88, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 132/221 (59%), Gaps = 4/221 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L++ED+ + I L K + VD G + + YDA+ILD+ LP +DG Sbjct: 1 MRLLVVEDEKKLNGLITKKLEKEYYGVDSCFDGEEAIRYVEGTEYDAIILDIMLPKLDGF 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++++ R K + P+L+LTARD + ++V+GL GADDYL KPF E+ AR+ L+RR + Sbjct: 61 EVIKRIRAKKNKVPILLLTARDNIDDKVKGLDYGADDYLVKPFIFEELMARIRVLLRRNS 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G A N + N+ +D + G + L +E+++LE L+RN G++L R+ IE+ ++ Sbjct: 121 GNADNVITVANLKVDLDAKTVFRDGVLIKLSGREYSILEYLIRNKGKILPRERIEDHIWN 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYTLG 217 ++ E +N ++V++ +LR+K+ I T+ G+GY L Sbjct: 181 YEYEGGTNVIDVYIRYLRKKIDDSYTPKLIHTIRGLGYVLR 221 >UniRef50_UPI0001C16F99 Multi-component Transcriptional regulator, Winged helix family n=2 Tax=Nostocaceae RepID=UPI0001C16F99 Length = 1329 Score = 327 bits (839), Expect = 2e-88, Method: Composition-based stats. Identities = 84/224 (37%), Positives = 131/224 (58%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL++EDD LI + L+ ++V+ G+ + + + YD ++LD+ LP +DG Sbjct: 1 MKILVVEDDALIACTLSNFLTYQNYAVEVANDGKTAWDLVETYEYDLILLDIVLPKLDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + ++ R G+R P+L+LT RD+ ++ GL GADDY+ KP E+ AR+ AL+RR Sbjct: 61 SLCKKIRSSGRRVPILLLTGRDSSHDKAIGLDAGADDYVVKPCDEEELVARVRALLRRGG 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + L G + LDP T + L+L PKE+ALLELLMRN RV S +I + L++ Sbjct: 121 VTSQPVLEWGGLRLDPSSCEVTYQQDQLSLTPKEYALLELLMRNNRRVFSCGMILDHLWS 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGS-----DFIRTVHGIGYTLGEK 219 +++ +AV H+ LR KL + D + TV+GIGY L + Sbjct: 181 YEDTPGEDAVRTHIKGLRMKLKAAGAPHDLVETVYGIGYRLKPQ 224 Score = 94.0 bits (234), Expect = 3e-18, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 6/116 (5%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 ++IL+++DD+ + ++ L+ G + Q D +ILD+ +PGM G Sbjct: 382 IKILVVDDDLKTLELLQVLLTPWGLEIVTLNYPEQFWSTWEKIHPDMLILDIEMPGMSGI 441 Query: 61 DILREWRE--KGQREPVLILTARD--ALAERVEGLRLGADDYLCKPFALIEVAARL 112 ++ + R +G+ P+L LT + +V +GADD++ KP + E+ R+ Sbjct: 442 ELCKMIRSHDQGREVPILFLTVHSNAEIVNQV--FSVGADDFVSKPIIISELVNRI 495 Score = 68.9 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 2/77 (2%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 +L+ +DD + +K L + G+ V G Q D ++LDL +PGM+G + Sbjct: 1076 VLVCDDDPITRQELKNLLLQGGYRVLTVDSGDQAIAQAVIQHPDVILLDLVMPGMNGWET 1135 Query: 63 LREWREKGQ--REPVLI 77 + ++ P++I Sbjct: 1136 MAGLKKCSDTKDIPIVI 1152 Score = 41.2 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 16/38 (42%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEA 39 +IL+IEDD + D + T + GR+ Sbjct: 1205 KILIIEDDHDLADLLATLFDRHDIETFIAKTGREAIHL 1242 >UniRef50_B2J1E6 Multi-component transcriptional regulator, winged helix family n=2 Tax=Nostoc punctiforme PCC 73102 RepID=B2J1E6_NOSP7 Length = 787 Score = 327 bits (839), Expect = 2e-88, Method: Composition-based stats. Identities = 86/223 (38%), Positives = 128/223 (57%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILLIEDD ++ + L++ ++V+ G+ G E + YD ++ D+ LP +DG Sbjct: 1 MRILLIEDDEVLASVLLQSLTQQHYAVEIAEDGQIGWEYAQATNYDLILTDVVLPKLDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + + R G P+L++TA+D ++R+ GL GADDYL KP L E+ AR+ AL+RR + Sbjct: 61 TLCQRLRSNGCSTPILLITAKDETSDRIRGLDAGADDYLIKPLNLRELQARVRALLRRGD 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 L G + LDP T + L L PKE++LLE+L+RN RV SR I E L+T Sbjct: 121 TPRPPVLEVGALRLDPSICEVTYDNQVLDLTPKEYSLLEILLRNPLRVFSRGDIIEHLWT 180 Query: 181 WDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTLGEK 219 +D+ V+ H+ LR KL D+I V+G+GY L + Sbjct: 181 FDDPPQEETVKSHIKGLRHKLKVVGAVDWIENVYGLGYRLKSQ 223 Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 2/120 (1%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 +L+++DD LI + L G + + E L S D +ILD+ +P + G ++ Sbjct: 502 VLVVDDDPLILAALGPMLEPWGMRITGLDDPLRFWEVLQSTAPDLLILDVEMPHISGIEL 561 Query: 63 LREWRE--KGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + R + Q P++ LTA + + G DDY+ KP E+ AR+ + R+ Sbjct: 562 CQAVRTDPQWQELPIVFLTAHREMETVQQVFAAGGDDYVVKPVVGAELLARITHRLERSR 621 >UniRef50_B1ZVS5 Two component transcriptional regulator, winged helix family n=3 Tax=Chlamydiae/Verrucomicrobia group RepID=B1ZVS5_OPITP Length = 228 Score = 326 bits (838), Expect = 3e-88, Method: Composition-based stats. Identities = 87/220 (39%), Positives = 136/220 (61%), Gaps = 3/220 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L++EDD I + GL + G++VD G G S YDA ++D+ LP +DG Sbjct: 6 MRVLVVEDDAKISSFVVKGLKQEGYAVDHAPDGDTGLALATSTAYDAAVVDIMLPELDGL 65 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR-T 119 ++R R + PVL L+AR ++ +RV+GL+ G DDYL KPFA E++ARL+AL+RR + Sbjct: 66 SLVRRLRAERSAMPVLFLSARASVEDRVKGLQAGGDDYLTKPFAFAELSARLQALIRRAS 125 Query: 120 NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 + L G+V LD R T+ G+P+ L+P+EF+LLE L+R+AGR +++ +I E ++ Sbjct: 126 RSPEATRLSAGDVTLDLVSRTVTVGGQPVELQPREFSLLEYLLRHAGRPVTKVMILEHVW 185 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGSD--FIRTVHGIGYTLG 217 + + +N V+V + LR K+ D I T+ G+GY Sbjct: 186 DYSFDPQTNVVDVLMSRLRSKIDPDKTRIETLRGVGYVFK 225 >UniRef50_Q2SPE2 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=18 Tax=Proteobacteria RepID=Q2SPE2_HAHCH Length = 226 Score = 325 bits (836), Expect = 5e-88, Method: Composition-based stats. Identities = 85/224 (37%), Positives = 132/224 (58%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L+IEDD + + GL + G+ VD G+ G + YD +++D LP +DG Sbjct: 1 MRVLVIEDDKDVAAYLSKGLKESGYVVDATDNGKTGLHMATTESYDLLLVDRMLPELDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++R R G + PVL+L+A + +RV+GLR G DDYL KPF+ E+ AR+EAL+RR+ Sbjct: 61 SVVRMLRAGGSKTPVLVLSALGEVDDRVQGLRAGGDDYLVKPFSFSELLARIEALLRRSQ 120 Query: 121 GQAS--NELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 Q L+ ++ +D R G + L+P+EF LLE MRN G+VL+R ++ EK+ Sbjct: 121 QQQDVVTTLKVADLEMDLLARTVKRNGLSIDLQPREFRLLEYFMRNPGQVLTRTMLLEKV 180 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTLGE 218 + + + +N ++VH+ LR K+ DF + T+ G GY L E Sbjct: 181 WDYHFDPQTNVIDVHISRLRAKIDKDFETPLLHTIRGAGYVLRE 224 >UniRef50_B2IXN9 Multi-component transcriptional regulator, winged helix family n=4 Tax=Nostocaceae RepID=B2IXN9_NOSP7 Length = 624 Score = 325 bits (836), Expect = 5e-88, Method: Composition-based stats. Identities = 89/223 (39%), Positives = 134/223 (60%), Gaps = 6/223 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD L+ + T L+K + VD G G E + YD ++LD+ LP +DG Sbjct: 1 MRILLVEDDDLLAQAVATALTKQNYVVDIAADGEAGWELVNVCNYDLILLDVILPKLDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + R+ R++G + +L+LTA+D ++V GL GADDY+ KPF E++AR+ AL+RR N Sbjct: 61 SLCRQLRQEGYQMLILLLTAKDTKTDKVIGLDAGADDYVVKPFDFQELSARIRALLRRGN 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 L G+++LDP T A L L KEF+LL+L +RN R+ SR I ++L++ Sbjct: 121 TALPPVLEWGSLLLDPSTCEVTYADIALNLTAKEFSLLDLFLRNNQRIFSRATIVDQLWS 180 Query: 181 WD-EEVTSNAVEVHVHHLRRKLGS-----DFIRTVHGIGYTLG 217 + + N ++ H+ LR+KL + DFI TV+G+GY L Sbjct: 181 AEKDPPEENTIKSHIKSLRQKLKTAGANYDFIETVYGMGYRLK 223 Score = 75.1 bits (185), Expect = 1e-12, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 10/117 (8%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RI+++EDD I I+ L +G ++ + L D +ILD +P ++G + Sbjct: 499 RIMVVEDDPQILTVIQQSLETLGITLKTLEDSCYFWDTLTEFSPDLLILDAEMPYINGIE 558 Query: 62 ILREWREKGQR--EPVLI----LTARDALAERVEGLRLGADDYLCKPFALIEVAARL 112 + + R PV+ L+A + E++ +GADD + KP + A + Sbjct: 559 LCQVVRNDPCWKLLPVVFVVDNLSA--DIVEQI--FAIGADDCVSKPIVSSTLIACI 611 >UniRef50_A0RG02 Two-component response regulator n=92 Tax=Bacteria RepID=A0RG02_BACAH Length = 236 Score = 325 bits (835), Expect = 6e-88, Method: Composition-based stats. Identities = 86/223 (38%), Positives = 134/223 (60%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L++ED+ + + + L+ +SVD G + + A YD ++LD+ +PG++G Sbjct: 13 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 72 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L++ R PVL+LTA+D + +RV+GL LGADDYL KPFA E+ AR+ LMRR Sbjct: 73 QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 132 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G SN ++++D T + +TL KEFA+LE ++RN VL+R IE+ ++ Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192 Query: 181 WDEEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTLGEK 219 +D E SN ++V+V +LR+K+ S I TV G GY L + Sbjct: 193 YDYEGGSNIIDVYVRYLRKKVDSQFETKLIHTVRGTGYVLRVE 235 >UniRef50_B7K7W8 Multi-component transcriptional regulator, winged helix family n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7K7W8_CYAP7 Length = 799 Score = 325 bits (835), Expect = 7e-88, Method: Composition-based stats. Identities = 84/224 (37%), Positives = 130/224 (58%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M++LL+EDD + + IK L + V+ T G+ G E YD ++LDL LP +DG Sbjct: 1 MKLLLVEDDQNLAEVIKEALKSQHYLVELATDGQTGLELAEMFEYDLIMLDLMLPKLDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++ R+KG P+L++T +D + +V+ L GADDYL KPF + E+ AR+ AL+RR Sbjct: 61 QFCQQRRKKGDLTPILLVTGQDDASCKVKALDAGADDYLVKPFNIQELLARVRALLRRGG 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 ++ L+ G + L+P T GE + L KE+ +LEL +RN R+ S+ + E L++ Sbjct: 121 LSSTPLLQWGPLNLNPSSCQVTYEGELIHLTAKEYGILELFLRNRNRIFSQSALIEHLWS 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLG-----SDFIRTVHGIGYTLGEK 219 +DE T NAV + LR+KL + I TV+G+GY L + Sbjct: 181 FDEAPTENAVRTQIKSLRQKLKKAGASPNLIETVYGLGYRLNKN 224 Score = 101 bits (253), Expect = 2e-20, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 2/113 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +I++++DD + I+ L GFS+ + + L D +ILD+ +P + G + Sbjct: 499 KIMIVDDDPNLLKLIQFHLEPWGFSITLLEDPKLFWDILERTTPDLLILDVEMPEISGIE 558 Query: 62 ILREWRE--KGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARL 112 + + R P+L L+ EG + GADDY+ KP E+ R+ Sbjct: 559 LCQVVRNDPHWHHLPILFLSGHRESKFVSEGFQAGADDYIYKPIVDSELVTRI 611 Score = 46.6 bits (111), Expect = 5e-04, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 2/107 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDG-- 59 +L++++D ++ I G T Q KEA+ + D ++LD+ P + Sbjct: 374 HLLIVDNDFILVQSIVNQAKLWGLIPQVATDIAQAKEAIARSRPDVILLDMGFPDREEIC 433 Query: 60 RDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALI 106 ++L++ R+ P +I + ++ + RV+ RLGA +L KP Sbjct: 434 LELLKDIRQLIPPIPTVITSDQNNFSVRVKVARLGAVGFLQKPLPPE 480 >UniRef50_A7ZEI3 Transcriptional activator protein CopR n=9 Tax=Bacteria RepID=A7ZEI3_CAMC1 Length = 219 Score = 324 bits (832), Expect = 1e-87, Method: Composition-based stats. Identities = 85/219 (38%), Positives = 133/219 (60%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL++ED++ + I L K G+SVD G + + A YD ++LDL +P MDG Sbjct: 1 MKILVVEDEIDLNSVITRHLKKNGYSVDSACNGEEAMDFTAVAHYDLIVLDLMMPVMDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 L+ R PVLILTA+D + + V+GL GADDYL KPF E+ AR+ L+RR + Sbjct: 61 TFLQRSRAAKLVTPVLILTAKDDVDDVVKGLDAGADDYLVKPFDFKELLARVRTLIRRNS 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G ++E+ G + +D K+ +GE + L KE+ +LE LM N GR+L+R I+E ++ Sbjct: 121 GNVASEICAGELKIDLSKKSVEFSGEQIELTGKEYEILEFLMLNKGRILTRDQIKEHVWD 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGS-DFIRTVHGIGYTLGE 218 +D SN ++V + ++R+KLG + I+T G+GY + + Sbjct: 181 FDYTGGSNVIDVLIKNIRKKLGECEAIQTKRGLGYVVKD 219 >UniRef50_C5NUZ8 Response regulator ArlR n=4 Tax=Bacteria RepID=C5NUZ8_9BACL Length = 223 Score = 323 bits (831), Expect = 2e-87, Method: Composition-based stats. Identities = 80/223 (35%), Positives = 130/223 (58%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL++ED+ + I L + +SVD G + + + + YD +I D+ +P +DG Sbjct: 1 MKILVVEDERDLNRIITKHLKRNNYSVDSCFDGEEALDFVGYSDYDLIITDIMMPNVDGY 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + ++ RE PV++LTA+D L +++ GL GADDY+ KPF E+ AR+ LMRR Sbjct: 61 EFIKRLRESKNNTPVIMLTAKDTLEDKIVGLDSGADDYIVKPFEFDELFARIRVLMRRNY 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G A+N ++ +++LD K+ T GE + L KE+ +LE LM+N +LSR I ++ Sbjct: 121 GLATNVIQIDDIVLDISKKQVTRNGENIGLTGKEYEVLEYLMKNKESILSRDQILNHVWD 180 Query: 181 WDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTLGEK 219 +D + SN V+V + ++R+KL I T G+GY + EK Sbjct: 181 YDYDGASNIVDVIIKNIRKKLDNGTDKTIIYTKRGLGYFVKEK 223 >UniRef50_A6WIX6 Two component transcriptional regulator, winged helix family n=3 Tax=Bacteria RepID=A6WIX6_SHEB8 Length = 227 Score = 323 bits (830), Expect = 3e-87, Method: Composition-based stats. Identities = 88/225 (39%), Positives = 133/225 (59%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M +LL+ED+ I D I GL F+V G QG +A + +D +ILD+ LPG DG Sbjct: 1 MNVLLVEDEQKIADFICEGLRAKHFNVTHCADGNQGYQAASNNTHDVIILDIMLPGRDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 DILR R++G P+++LTAR+ L +RV+GL +GADDYL KPF + E+ AR++AL+RR Sbjct: 61 DILRSLRQQGVDTPIILLTARNELGDRVQGLDMGADDYLAKPFYVEELHARIQALLRRHG 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G + + G + LD R G+ + L +EF+LLE LMR+ +VL+R + E ++ Sbjct: 121 GTQQHVVEVGALQLDCINRSINCQGQSVELTSREFSLLEHLMRSPNQVLTRGQLLEHVWG 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGS--------DFIRTVHGIGYTLG 217 +D + +N V+V + +R K+ S I ++ G GY L Sbjct: 181 YDFDPCTNVVDVCIKRIRSKMASLEKAGKMVGAIESIRGTGYRLS 225 >UniRef50_B7K2S9 Two component transcriptional regulator, winged helix family n=2 Tax=Cyanothece RepID=B7K2S9_CYAP8 Length = 635 Score = 323 bits (829), Expect = 3e-87, Method: Composition-based stats. Identities = 86/223 (38%), Positives = 128/223 (57%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+ILLIEDD I L++ ++VD G G E PYD ++LD+ LP +DG Sbjct: 1 MKILLIEDDASTSLAISQTLTQKKYAVDAVNNGETGLELAQLFPYDVILLDIMLPQLDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + R R + P+L+LTA++ + V GL GADDYL KPF E+ AR++AL RR Sbjct: 61 TVCRRLRSQQNHTPILLLTAKNHPRDCVMGLEAGADDYLVKPFDWAELLARIQALSRRGQ 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + LR N++L+ T G+ L L P E++LLEL +R+ RV SR++I ++++T Sbjct: 121 QVLPDVLRWENLVLNQKTHEVTYQGQLLHLTPTEYSLLELFLRHPQRVFSRQVIIDQIWT 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGS-----DFIRTVHGIGYTLGE 218 D+ + H+ LR+KL + + I+TV+G GY LGE Sbjct: 181 LDKVPGEETISSHIKALRQKLKAVGMTQNMIKTVYGFGYRLGE 223 Score = 83.2 bits (206), Expect = 6e-15, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 2/109 (1%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 ++LI+DD + +K L+ GF+V + +Q L + D +ILDL +P G ++ Sbjct: 510 LMLIDDDPNFLEVLKATLTPWGFNVVSLSNPQQFWPVLEATNPDLLILDLEMPHFSGLNL 569 Query: 63 LREWRE--KGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVA 109 + R+ + P+L L+ D + L GAD YL K A+ E+ Sbjct: 570 CQAVRKDDRFCSVPILFLSGHDDGESIRQMLVHGADCYLPKTIAVEELI 618 >UniRef50_B4WME0 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WME0_9SYNE Length = 236 Score = 323 bits (829), Expect = 3e-87, Method: Composition-based stats. Identities = 83/234 (35%), Positives = 130/234 (55%), Gaps = 16/234 (6%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M +L ED+ I ++ GL + GF V++ G E YD ++LD+ +PG DG Sbjct: 1 MHVLFAEDEPKIASFVQIGLKEQGFVVEYCDHGDIAYEKAIQNEYDVILLDIMMPGKDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 IL+ R+ G+ PV++LTARD L +R++GL LGADDY+ KPF + E+ AR+ A++RR+ Sbjct: 61 FILKNLRQVGRNTPVILLTARDELDDRLQGLNLGADDYIAKPFFVEELIARIHAVVRRSA 120 Query: 121 GQASNELRHGNVMLDPGKRIATLA------------GEPLTLKPKEFALLELLMRNAGRV 168 G+ N + G LD R T + + L +EF LLE LMR+ GRV Sbjct: 121 GEQPNLVTVGPFKLDRITRTVTCQSEAQSESQSEGTQQVVELTTREFNLLEYLMRSPGRV 180 Query: 169 LSRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYTLGE 218 +R + E ++ +D ++N V+V + LR+K+ +I +V G+GY + Sbjct: 181 FTRTQMLEHVWGYDFNPSTNVVDVCIQRLRKKIDMKGNERWIESVRGVGYRFRQ 234 >UniRef50_Q3B3K7 Two component transcriptional regulator, winged helix family n=9 Tax=Bacteroidetes/Chlorobi group RepID=Q3B3K7_PELLD Length = 232 Score = 323 bits (829), Expect = 4e-87, Method: Composition-based stats. Identities = 89/221 (40%), Positives = 125/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L+IED+ I +K GL + F+VD G G E S YD ++D LP + G Sbjct: 1 MRLLIIEDEPGIARFLKEGLEEEHFAVDTAFDGESGLELGMSNDYDLCLIDWMLPKLSGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++ R+ R+ G PV+ LTARD L + V GL GADDY+ KPFA E+ AR+ A +R+ Sbjct: 61 EVCRQLRKAGSAVPVIFLTARDTLDDVVFGLGAGADDYVKKPFAFEELLARIRARLRQNT 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 L G + LDP A LTL PKEFALLE L+RN RV +R I E ++ Sbjct: 121 PTTGP-LTAGALWLDPETHRAGCNRHDLTLTPKEFALLEYLLRNLDRVCTRSRIIEHVWD 179 Query: 181 WDEEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTLG 217 + ++ ++V+V+ LRRKL + I+TV G+GY + Sbjct: 180 IHFDADTSVIDVYVNFLRRKLEAAGCTGLIKTVRGVGYVIR 220 >UniRef50_A4SHT1 Two-component system response regulator n=10 Tax=Proteobacteria RepID=A4SHT1_AERS4 Length = 218 Score = 322 bits (828), Expect = 4e-87, Method: Composition-based stats. Identities = 95/218 (43%), Positives = 130/218 (59%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL++ED+ + + L GF D G + + PYDA+ILDL LPG DG Sbjct: 1 MRILIVEDEKTLAGQLAEQLRLSGFVTDLCHDGNEAGFLGETEPYDAIILDLGLPGRDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L+EWR KG PVL+LTAR L E++EGL GADDYL KPF + E+ AR++AL+RR Sbjct: 61 SVLKEWRSKGIDTPVLVLTARGQLHEKIEGLNAGADDYLTKPFQVAELVARVQALVRRAA 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G AS+ L G V LD G P+ L EF +L LM++ G+V+SR + + +Y Sbjct: 121 GNASSILEIGGVRLDMAASQVWYEGTPIKLTAHEFRVLGYLMQHRGKVVSRSELIDHIYA 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE 218 D + SN VEV + +R+K +D I TV G+GY + E Sbjct: 181 QDFDRDSNTVEVFIGRIRKKTHADLIETVRGLGYRINE 218 >UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacteria RepID=C7H8D4_9FIRM Length = 299 Score = 322 bits (827), Expect = 5e-87, Method: Composition-based stats. Identities = 80/220 (36%), Positives = 119/220 (54%), Gaps = 5/220 (2%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +IL+++D+ I + I+ L G+ + G L +D VILD+ +P MDG Sbjct: 74 KILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPFMDGMT 133 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT-- 119 LRE R + PV+ILTAR +++ GL GADDY+ KPF+ E+ AR++A++ RT Sbjct: 134 CLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNRTMP 193 Query: 120 -NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 + + + G + +D +AGE ++L PKEF LL L N G LSR+ I +K+ Sbjct: 194 RSEASDGTMTFGELTIDTASHTVRVAGEDVSLTPKEFDLLVFLASNKGIALSREKILQKV 253 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGS--DFIRTVHGIGYTL 216 + +D V+ HV LR LG +I TV GIGY Sbjct: 254 WNYDYFGEDRTVDTHVKMLRGHLGKCRGYIATVWGIGYKF 293 >UniRef50_B9XE94 Two component transcriptional regulator, winged helix family n=2 Tax=Verrucomicrobiales RepID=B9XE94_9BACT Length = 224 Score = 322 bits (827), Expect = 6e-87, Method: Composition-based stats. Identities = 87/223 (39%), Positives = 130/223 (58%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL++ED+ I+ L F+VD G + + P+DA++LD+ LPG DG Sbjct: 1 MRILVVEDEKKTASFIRKALQAESFAVDVSHDGTEALLLASNTPFDAIVLDIMLPGRDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +LR+ R++ + PVL+L+AR + ERVEGL GADDYL KPFAL E+ AR+ ++ RR+N Sbjct: 61 SVLRQLRQQKNQTPVLLLSARGEVNERVEGLNAGADDYLPKPFALAELIARVRSIGRRSN 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 S L+ ++ LD R A G L +E+ LLE LMR GR+ R I EK++ Sbjct: 121 EPKSVLLQVADLTLDTITRQAQRGGTSFELTTREYRLLEFLMRTPGRICGRMAILEKVWD 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYTLGEK 219 +D + +N V+V++ LR K+ + TV +GY + E+ Sbjct: 181 YDFDPGTNLVDVYIKRLREKVDEGFEPKLLHTVRNVGYVMKEQ 223 >UniRef50_B8HL49 Multi-component transcriptional regulator, winged helix family n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HL49_CYAP4 Length = 652 Score = 322 bits (826), Expect = 7e-87, Method: Composition-based stats. Identities = 90/221 (40%), Positives = 133/221 (60%), Gaps = 4/221 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+ILLIEDD ++ D + + L + VD GR+G + YD +++D+ LP DG Sbjct: 1 MKILLIEDDPVLTDVLVSTLRVQRYIVDAVADGRRGWDYAQDTSYDLILMDVGLPQQDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + R R +G + P+L++TA+DA +R+ GL GADDYL KP L E+ AR+ AL+RR + Sbjct: 61 TLCRRLRAQGSQVPILLITAQDAKVDRIAGLDAGADDYLTKPLDLAELQARVRALLRRGS 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + L+ GN+ LDP T A L L PKE+ LLEL +R+ G+V SR + E L+T Sbjct: 121 ETKTPILQVGNLQLDPRSCQVTYAERSLNLTPKEYNLLELFLRHPGQVFSRGQLVEHLWT 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTLG 217 +D+ +V+ HV LR+KL + D+I ++GIGY L Sbjct: 181 FDDPPLEESVKAHVKGLRQKLKAAGAVDWIENIYGIGYRLN 221 Score = 92.1 bits (229), Expect = 1e-17, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 6/122 (4%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 +LL++DD + + I L G + + L S D +ILD+ +P G ++ Sbjct: 382 VLLVDDDPIFLEQIVLLLQPWGIHLTGINNPLELWSVLPSTRPDLLILDVEMPQTSGIEL 441 Query: 63 LREWRE--KGQREPVLILTA-RD-ALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR 118 + R + Q P++ LTA RD ++V +GADD++ KP + E+ R+ + R Sbjct: 442 CQSLRSDPEWQSLPIIFLTAHRDRETIQQV--FTVGADDFVTKPVVVPELLTRIINRLER 499 Query: 119 TN 120 T Sbjct: 500 TR 501 >UniRef50_D2QKB6 Two component transcriptional regulator, winged helix family n=11 Tax=Bacteroidetes RepID=D2QKB6_9SPHI Length = 230 Score = 321 bits (824), Expect = 1e-86, Method: Composition-based stats. Identities = 86/224 (38%), Positives = 137/224 (61%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL++ED+ + +K GL + VD G+ G+ + YD ++LD+ LP M+G Sbjct: 6 MKILVVEDEPKLASFVKKGLEEQSCEVDVAYDGQVGRNMALNNLYDVIVLDINLPKMNGF 65 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 D+++ R++ R PVL+LTA ++ +++ G GADDYL KPF E+ ARL AL +R++ Sbjct: 66 DVVQSIRQEKNRTPVLMLTAMGSVDDKLTGFEAGADDYLVKPFEFRELMARLRALTKRSS 125 Query: 121 --GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 G +N L+ ++ LD +++A + + L KEF LL+ LMRN GRV+SR I EK+ Sbjct: 126 DAGMQTNVLKVADLELDLNEKVARRGDKRIELTAKEFGLLDYLMRNRGRVVSRVDIAEKV 185 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTLGE 218 + + +N ++V+V+ LR+K+ DF I TV G+GY L E Sbjct: 186 WDIHFDTGTNVIDVYVNFLRKKIDKDFPTKLIHTVIGMGYMLKE 229 >UniRef50_Q3MGM2 Sensor protein n=22 Tax=Bacteria RepID=Q3MGM2_ANAVT Length = 1629 Score = 320 bits (823), Expect = 1e-86, Method: Composition-based stats. Identities = 83/224 (37%), Positives = 127/224 (56%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL++EDD L + L+ ++V+ + G E + + YD ++LD+ LP +DG Sbjct: 1 MKILIVEDDELNAYALTAVLTNQNYAVEVGSDGITAWELIQTYDYDLILLDVILPRLDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + R+ R G++ P+L+LT D+ E+ GL GADDY+ KPF E+ AR+ AL+RR Sbjct: 61 SLCRQIRSSGRQMPILLLTGCDSSHEKAIGLDAGADDYVVKPFDEEELVARVRALLRRGG 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 A L GN+ LDP L+L PKE+ALLEL +R++ RV S +I E +++ Sbjct: 121 TTAQPILEWGNLQLDPSSCEVRYNQNLLSLTPKEYALLELFLRHSRRVFSCSMILEHIWS 180 Query: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGEK 219 +++ AV H+ LR KL D + TV+GIGY L + Sbjct: 181 YEDTPGEEAVRTHIKGLRMKLRNAGAPGDLVETVYGIGYRLKAQ 224 Score = 89.4 bits (222), Expect = 7e-17, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 6/115 (5%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 ++L ++DD I ++T L G V RQ E L D +ILD+ +P +G + Sbjct: 382 KVLAVDDDPQILAILQTLLHPWGLQVITLDDPRQFWETLRDVNPDLLILDVEMPYTNGIE 441 Query: 62 ILREWRE--KGQREPVLILTAR--DALAERVEGLRLGADDYLCKPFALIEVAARL 112 + + R + P+L LT + +V +GADD++ KP E+ R+ Sbjct: 442 LCQVVRNDPQWSELPILFLTVHKDGEIVNQV--FSVGADDFVSKPIVGPELVTRI 494 Score = 79.7 bits (197), Expect = 6e-14, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 43/77 (55%), Gaps = 2/77 (2%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 +L+ +DD LI +++ L + G+ V G++ + + D ++LDL +PGM+G + Sbjct: 1381 VLVCDDDPLIRTELQSLLEQGGYRVVTVATGKEAIASASTQHPDVIVLDLLMPGMNGWET 1440 Query: 63 LREWRE--KGQREPVLI 77 + +E + + P++I Sbjct: 1441 MAMLKESTETKHIPIVI 1457 Score = 43.1 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 12/122 (9%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RIL++EDD + + T + GR+ D +ILDL LP DG Sbjct: 1502 RILIVEDDADLAELFVTLFERHDIETFSAKTGREAIHLSQEVNPDLLILDLILPETDGFA 1561 Query: 62 ILREWREKGQ--REPVLILTARD-ALAERVEGLRLGADDYL------CKPFALI--EVAA 110 ++ ++ + PV++ +A+D +ER L+LG ++L K F E+ Sbjct: 1562 VVDWLQKHQRLCNIPVVVYSAKDLDESERKR-LKLGHTEFLTKGRVTTKEFEQRVIELLQ 1620 Query: 111 RL 112 R+ Sbjct: 1621 RI 1622 >UniRef50_Q2IUG0 Two component transcriptional regulator, winged helix family n=207 Tax=Bacteria RepID=Q2IUG0_RHOP2 Length = 257 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 96/215 (44%), Positives = 133/215 (61%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 R+L++EDD + + T L+ G+ VD G +G + PYDAV+LD+ LP MDG Sbjct: 30 RLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGIS 89 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 +L WR + PVLILTARD +++V+G GADDY+ KPF L EV AR+ AL+RR+ G Sbjct: 90 VLEAWRRNARAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSAG 149 Query: 122 QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTW 181 A +EL G V+LD ++ G P+ L E+ LL LM ++GRV+SR + E LY Sbjct: 150 HAQSELTCGPVVLDTRTGRVSVRGHPVKLTSHEYRLLAYLMHHSGRVVSRTELVEHLYDQ 209 Query: 182 DEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTL 216 D + SN +EV V +R+KL D I+TV G+GY L Sbjct: 210 DFDRDSNTIEVFVGRIRKKLDVDIIQTVRGLGYLL 244 >UniRef50_P39663 Alkaline phosphatase synthesis transcriptional regulatory protein sphR n=34 Tax=Cyanobacteria RepID=SPHR_SYNE7 Length = 257 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 90/233 (38%), Positives = 124/233 (53%), Gaps = 17/233 (7%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALY---------SAPYDAVILDL 52 RIL++ED+ +I D + L + GF+VD GR + D V+LDL Sbjct: 25 RILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLDL 84 Query: 53 TLPGMDGRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARL 112 LP ++G D R R +G P+L+L+A+D +RV GL +GADDYL KPF E+ AR Sbjct: 85 MLPAVNGLDFCRLLRRQGVTVPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELVARC 144 Query: 113 EALMRRTNGQA---SNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVL 169 AL+RR+ Q LR+ + L P + L LTL PKEF LLEL MR+ RV Sbjct: 145 RALLRRSQNQPAETPAVLRYEGLKLFPEECRVLLDDRELTLSPKEFRLLELFMRHPRRVW 204 Query: 170 SRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLG-----SDFIRTVHGIGYTLG 217 SR + EK++ D S ++VH+ LR K+ ++ TV G GY LG Sbjct: 205 SRDQLLEKIWGIDFMGDSKTIDVHIRWLREKIEANPSNPSYLLTVRGFGYRLG 257 >UniRef50_Q21EC1 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=Q21EC1_SACD2 Length = 232 Score = 320 bits (822), Expect = 2e-86, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 123/229 (53%), Gaps = 12/229 (5%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RILLIED I I L + + V + G +G + +D +ILD+ LP MDG Sbjct: 4 RILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIMLPSMDGLQ 63 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR--- 118 + + R K P+L+LTA+ + ++RV GL GADDYL KPF++ E+ AR++A +RR Sbjct: 64 VCQHLRAKNIFTPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHLRRTDM 123 Query: 119 ----TNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLI 174 + QA + L G + +D KR T+ + +TL KEF LL + + G+V SR+ + Sbjct: 124 SQKESTPQADDALHFGELCIDKTKRRLTIGDKEITLTAKEFDLLLYMASHPGQVFSREKL 183 Query: 175 EEKLYTWDEEVTSNAVEVHVHHLRRKLG-----SDFIRTVHGIGYTLGE 218 + ++ + + V H++ LR KL ++ TV G+GY + Sbjct: 184 LDAVWGYQHSGYEHTVNSHINRLRTKLETDTSNPKYVLTVWGVGYKFYD 232 >UniRef50_D1BPS5 Two component transcriptional regulator, winged helix family n=3 Tax=Veillonella RepID=D1BPS5_VEIPT Length = 224 Score = 320 bits (822), Expect = 2e-86, Method: Composition-based stats. Identities = 83/223 (37%), Positives = 131/223 (58%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+ILL+ED+ ++ L +VD G+Q + + ++ YD +++D+ +P +DG Sbjct: 1 MKILLVEDEEMLNGITAKYLRAENMTVDTCFNGQQAIDYVNTSSYDVIVMDIMMPILDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 L + R G PVL+LTA+D+L ++V L GADDYL KPF L E+ AR+ AL RR Sbjct: 61 SALAQMRNDGNTTPVLLLTAKDSLQDKVTSLNTGADDYLVKPFDLEELTARIYALARRNA 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 A N++ G + ++ +R GE +TL KEF LL L N VLSR+ I + ++ Sbjct: 121 RHAQNDIHVGPLTINVPQRTVKRDGETITLTAKEFDLLFYLASNENIVLSRQQILDHVWE 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYTLGEK 219 +D E SN ++V++ +LR+K+ +D I+TV G+GY L + Sbjct: 181 YDYESYSNLIDVYIKNLRKKIDTDENVKLIQTVRGVGYVLKTE 223 >UniRef50_A8ZNT0 Two-component transcriptional regulator/diguanylate cyclase (GGDEF) n=1 Tax=Acaryochloris marina MBIC11017 RepID=A8ZNT0_ACAM1 Length = 792 Score = 320 bits (822), Expect = 2e-86, Method: Composition-based stats. Identities = 86/222 (38%), Positives = 132/222 (59%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL++EDD L+ + ++T L + ++V+ T G+ E + + YD ++ D+ LP +DG Sbjct: 1 MRILVVEDDELVAEALQTLLVDLNYAVELATDGQTAAELVEAFEYDLILSDVMLPRLDGV 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + ++ R +G + P+L+LT +D+ +R GL GADDY+ KPF E+AAR+ AL+RR Sbjct: 61 GLCQQLRSQGYQIPILLLTGKDSSHDRAIGLDAGADDYVVKPFDPEELAARVRALLRRGE 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 L+ N+ LDP L L PKE+AL+EL+MRN RV S +I E ++T Sbjct: 121 AIKPPILKWENLQLDPRACEVKYQDVLLKLTPKEYALVELMMRNTRRVFSCGMILEHIWT 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGS-----DFIRTVHGIGYTLG 217 +++ AV H+ LR+KL + D I TV+GIGY L Sbjct: 181 YEDTPGEEAVRTHIKGLRQKLKASGAPTDLIETVYGIGYRLK 222 Score = 92.1 bits (229), Expect = 1e-17, Method: Composition-based stats. Identities = 40/152 (26%), Positives = 70/152 (46%), Gaps = 10/152 (6%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RI++++DD I + + G V + Q E L ++P D ++LD+ +P + G D Sbjct: 489 RIMIVDDDPQILETVAALCKPWGLEVIGLDEPTQFWETLTNSPPDLLLLDVEMPEIGGID 548 Query: 62 ILREWRE--KGQREPVLILTARDALAERV-EGLRLGADDYLCKPFALIEVAARLEALMRR 118 + R R + ++ P++ LTA A+ V + GADD++ KP E+ R+ L R Sbjct: 549 LCRVVRNDIQWEQLPIIFLTA-HTEADVVNQVYASGADDFISKPIVGPELVVRI--LNRL 605 Query: 119 TNGQASNELRHGNVMLDPGKRIATLAGEPLTL 150 + L +DP R+ + L Sbjct: 606 ERTRLQRRLS----TIDPLARVLSRHESTHAL 633 >UniRef50_B4WMF1 Response regulator receiver domain protein n=2 Tax=Cyanobacteria RepID=B4WMF1_9SYNE Length = 871 Score = 320 bits (822), Expect = 2e-86, Method: Composition-based stats. Identities = 85/215 (39%), Positives = 126/215 (58%), Gaps = 4/215 (1%) Query: 7 EDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREW 66 EDD + I+ L + +D T G +G+ PYD +++D LP +DG + ++ Sbjct: 2 EDDRALAGAIEQLLLSHHYVMDLATDGIEGRGMAEVFPYDLILMDWMLPKLDGMQLCQQL 61 Query: 67 REKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNE 126 R +G P+++LTARDA +RV GL GADDYL KPF E+ AR+ AL+RR+ G S Sbjct: 62 RNEGNSTPIILLTARDASTDRVAGLDAGADDYLVKPFEFEELLARIRALLRRSEGIVSPV 121 Query: 127 LRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTWDEEVT 186 L+ G++ LDP T P+ L PKE+ALLEL +RN R+ S + +K++ +++ T Sbjct: 122 LQWGDLQLDPCSSRVTCGDVPIALTPKEYALLELFLRNPERIFSLDSLLDKVWPFEDTPT 181 Query: 187 SNAVEVHVHHLRRKLG----SDFIRTVHGIGYTLG 217 +V H+ LR+KL SD I TV+G+GY L Sbjct: 182 VASVRTHIKGLRQKLRQVGLSDVISTVYGLGYRLR 216 Score = 96.7 bits (241), Expect = 4e-19, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 7/131 (5%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 +L+++DD + ++ L GF ++ Q + L D ++LD+ +P + G D+ Sbjct: 571 LLVVDDDSSMLTLLQKLLQPWGFKIEILCDPSQFWQTLEKVEPDLLLLDIKMPQLSGFDL 630 Query: 63 LREWRE--KGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARL-----EAL 115 + R + P+L ++A E +GADDY+ KP E+ AR+ + Sbjct: 631 CQVVRSDPRWHELPILFMSAHTDEKTIQEVFSVGADDYIRKPIVAPELVARVLGWLARSR 690 Query: 116 MRRTNGQASNE 126 RR + + Sbjct: 691 DRRLRTEIDSL 701 >UniRef50_Q026B5 Two component heavy metal response transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q026B5_SOLUE Length = 238 Score = 320 bits (821), Expect = 2e-86, Method: Composition-based stats. Identities = 94/221 (42%), Positives = 132/221 (59%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL++ED+ I D + GL G++VD G + ++ YD V+LD LP MDG Sbjct: 1 MRILVVEDEKRIADFLCRGLEGAGYAVDAALTGGAALDLIHDTDYDLVVLDRMLPDMDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L + R + PVLIL+AR AL +RV+GL GADDYL KPFA +E+ AR+ AL+RR Sbjct: 61 QVLEKMRSRKAGPPVLILSARGALDDRVKGLEQGADDYLVKPFAFVELLARVRALLRRGQ 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 L+ ++ LD +R T E + L PKEF +LE +MRN GR LSR +I E ++ Sbjct: 121 PT-PERLQVSDLALDCIRRKVTRGAETIDLAPKEFGILEYMMRNKGRPLSRTMIVEHVWD 179 Query: 181 WDEEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTLG 217 D + +N V+V++ HLR K+ I+TV GIGY + Sbjct: 180 MDYDGLTNIVDVYIRHLRSKIDDRFQQKLIQTVRGIGYMIE 220 >UniRef50_B5VWD3 Multi-component transcriptional regulator, winged helix family n=2 Tax=Arthrospira RepID=B5VWD3_SPIMA Length = 628 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 91/224 (40%), Positives = 140/224 (62%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD+ + D + L+ + VD G+QG E + S+ YD V+LD+ LP +DG Sbjct: 1 MRILLVEDDLHLADALVAMLTSQKYQVDLVNDGQQGWEYIQSSSYDLVLLDIELPLLDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + + R + P+L+LTAR+ ++V+GL GADDY+ KP + E++AR+ AL+RR++ Sbjct: 61 SLCHQLRSHNFQVPILLLTARNNQQDKVKGLDAGADDYMVKPLDIAELSARIRALLRRSS 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 S+ L + ++LD + G+PL L PKE+ LLELLM N R S I +KL+T Sbjct: 121 EATSSVLTYEKMVLDTSTCDVSYNGKPLKLTPKEYGLLELLMGNRQRTFSIDKILDKLWT 180 Query: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGEK 219 +D+ ++N V H+ LR+KL G++FI TV+G+GY L + Sbjct: 181 FDDPPSANTVRAHIKGLRQKLKAAGAGAEFIETVYGLGYRLNQN 224 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 37/127 (29%), Positives = 66/127 (51%), Gaps = 2/127 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 R+++++DD + I+ L G RQ + L S+ D ++LD+ +P ++G + Sbjct: 497 RVMIVDDDPQMLAAIQGLLQPWGIQTITLDDPRQFWKTLESSHPDLLVLDIEMPHLNGIE 556 Query: 62 ILREWRE--KGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 + + R + + PVL +TA+ R + + GADDYL KPF E+A R+ ++RT Sbjct: 557 LCQIVRNDPRWRGLPVLFVTAQTDRQIREQVFQAGADDYLTKPFTGSELATRIVNRLKRT 616 Query: 120 NGQASNE 126 A+ Sbjct: 617 QNLATRT 623 >UniRef50_C6QDD0 Two component transcriptional regulator, winged helix family n=5 Tax=Proteobacteria RepID=C6QDD0_9RHIZ Length = 262 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 84/223 (37%), Positives = 133/223 (59%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L+IEDD ++ L + G + D G G YD +I+D LP +DG Sbjct: 37 MRVLVIEDDRETAQFLQKSLKENGHTADLAGDGEAGLALATDGAYDVLIVDRMLPLLDGL 96 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +++ R +G R PVLIL+A + +RV+GLR G DDYL KP+A E+ AR+EAL RRT Sbjct: 97 SVIKSLRAEGNRTPVLILSALGEVDDRVKGLRAGGDDYLTKPYAYSELLARVEALGRRTA 156 Query: 121 GQASNE-LRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 + + G+++LD T +GE + L+P+E+ LLE LM++AG+V++R ++ E ++ Sbjct: 157 PEEQQTRISVGDLVLDRLSHRVTRSGEHILLQPREYRLLEYLMQHAGQVVTRTMLLEHVW 216 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTLGE 218 + + +N ++VHV LR K+ +F + TV G GYT+ + Sbjct: 217 DYHFDPQTNVIDVHVSRLRAKIDKNFDKPLLHTVRGAGYTIRD 259 >UniRef50_C4XS15 OmpR family two-component response regulator n=2 Tax=Desulfovibrio RepID=C4XS15_DESMR Length = 223 Score = 319 bits (820), Expect = 3e-86, Method: Composition-based stats. Identities = 86/223 (38%), Positives = 131/223 (58%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD I I GL + GF+VD G G + PY I+D+ LPG+DG Sbjct: 1 MRILLVEDDEKIASFILGGLRQSGFAVDHAANGPDGLHLAATEPYCVAIIDVMLPGLDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++ E R + P++IL+A+ ++ +RV GL G DDYL KPF+ E+ AR++AL+RR+ Sbjct: 61 QVIEELRRRKIMTPIIILSAKRSVEDRVRGLETGGDDYLSKPFSFAELLARVQALIRRST 120 Query: 121 GQASNE-LRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 + L G + ++ R + + L+P+EFALLE MRN G+VLS+ +I E ++ Sbjct: 121 SASEPTRLTVGELSMNLLTREVSRGETAVQLQPREFALLEYFMRNPGKVLSKTMIMEHVW 180 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTLGE 218 + + +N V+V V LR K+ D+ + T+ G+GY L E Sbjct: 181 DYHFDPQTNLVDVLVCRLRNKIDRDYDRKMLHTLRGVGYVLKE 223 >UniRef50_B2A1Z8 Two component transcriptional regulator, winged helix family n=2 Tax=Firmicutes RepID=B2A1Z8_NATTJ Length = 233 Score = 319 bits (820), Expect = 4e-86, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 125/226 (55%), Gaps = 9/226 (3%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 +L+++DD + + +K L GFSVD G+ G E + Y+ VILD+ LP MDG ++ Sbjct: 6 VLIVDDDKDLCNMVKLTLEHEGFSVDMAYDGKTGYEYVEKYNYNTVILDIMLPEMDGWEV 65 Query: 63 LREWREK--GQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + R + P+++LTA+ +++ GL+LGADDY+ KPF+ E+ AR+ AL+RR Sbjct: 66 CHKIRNSINNSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRALIRRDQ 125 Query: 121 --GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 L G++ +D + + L PKEF LL LL++N RV +R+ I EK+ Sbjct: 126 DFKDKDKILEKGDLTVDAHSYKVFVKDNEVDLPPKEFELLYLLIKNPERVFTREEILEKI 185 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGEK 219 + + + V+ HV +R+KL + I+TV G+GY K Sbjct: 186 WGFSFAGGTRTVDEHVKRIRKKLEPESGFDSLIQTVWGVGYKFEVK 231 >UniRef50_B2JBG7 Two component transcriptional regulator, winged helix family n=3 Tax=Cyanobacteria RepID=B2JBG7_NOSP7 Length = 228 Score = 319 bits (820), Expect = 4e-86, Method: Composition-based stats. Identities = 90/224 (40%), Positives = 125/224 (55%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL+IEDD I + L VD G +G E + YD ++LDL LP +DG Sbjct: 1 MRILIIEDDERIAKPLAEDLKHQHHVVDIACDGIEGWEYAQAGNYDLILLDLMLPRLDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + + R +L+LTARD ++ GL GADDYL KPF L E+AAR+ AL RR+ Sbjct: 61 TLCKRLRASNYNAFILMLTARDTTPNKIIGLDAGADDYLVKPFDLEELAARIRALSRRSQ 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 L HG++ LDP T +PL+L KE+ +LE ++N +VL+R I +KL+ Sbjct: 121 ETRQLILMHGDLQLDPRNCHVTYGNKPLSLTHKEYMILECFLKNPTQVLTRSAILDKLWE 180 Query: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGEK 219 +D+ V+ H+ +LR+KL DFI TV+GIGY L K Sbjct: 181 FDKLSGEETVKTHITNLRKKLRAVGSSEDFIETVYGIGYRLCPK 224 >UniRef50_B9KBQ0 Response regulator n=6 Tax=Thermotogaceae RepID=B9KBQ0_THENN Length = 233 Score = 319 bits (820), Expect = 4e-86, Method: Composition-based stats. Identities = 90/223 (40%), Positives = 137/223 (61%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LL+ED+ + D I L K F+VD G +G + +D VILD+ LP DG Sbjct: 11 MRVLLVEDEKDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEDFDVVILDVLLPVHDGW 70 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +IL+ REKG PVL+LTA + RV+GL +GADDYL KPF L E+ AR++AL+RR Sbjct: 71 EILKAMREKGINTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVKALIRRKA 130 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + +L G+++LD R G+ + L KE+ +LE LM N RV++++ ++E L++ Sbjct: 131 ENKNVKLVCGDLILDTATRKVFRGGKEIDLTKKEYQILEYLMMNKNRVVTKEELQEHLWS 190 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTLGEK 219 +D+ V S+ + H+ +LR+K+ F I TV GIGY + ++ Sbjct: 191 FDDTVFSDTLRSHIKNLRKKIDRGFKKKIIHTVRGIGYVVRDE 233 >UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria RepID=Q2JPV2_SYNJB Length = 230 Score = 319 bits (820), Expect = 4e-86, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 123/221 (55%), Gaps = 4/221 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 IL+IED+ + ++T L+ G+ V + G G A D V+LD LPG+ G + Sbjct: 10 HILVIEDEAKLARFVETELTCEGYRVSVASDGMAGLRAACDQNPDLVLLDWMLPGISGLE 69 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 I R R G R PV+++TARD +++R GL GADDY+ KPF++ E+ +R+ +R+ Sbjct: 70 ICRRLRSTGNRVPVVLMTARDEVSDRAAGLDAGADDYVVKPFSIQELLSRIRIYLRQPRR 129 Query: 122 QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTW 181 +L +++LDP R T + L KE+ LL LM + +VL+R+ I E ++ Sbjct: 130 SRDGQLVFMDLILDPVTREVTRGERQVELTAKEYDLLRYLMEHPRQVLTRQQILEHVWGC 189 Query: 182 DEEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYTLGE 218 D SN +EV++ +LR K+ I+TV G+GY L + Sbjct: 190 DFTGDSNIIEVYIRYLRLKIEGPGEKRLIQTVRGVGYVLRD 230 >UniRef50_P52076 Transcriptional regulatory protein qseB n=74 Tax=Proteobacteria RepID=QSEB_ECOLI Length = 219 Score = 318 bits (818), Expect = 6e-86, Method: Composition-based stats. Identities = 219/219 (100%), Positives = 219/219 (100%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN Sbjct: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK 219 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK 219 >UniRef50_A4VI02 DNA-binding response regulator n=12 Tax=Proteobacteria RepID=A4VI02_PSEU5 Length = 234 Score = 318 bits (817), Expect = 9e-86, Method: Composition-based stats. Identities = 103/218 (47%), Positives = 143/218 (65%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD +G+GI+T L G++VDW G AL ++ VILDL LP +DG Sbjct: 16 MRILLVEDDRALGEGIRTALKPEGYTVDWLQDGASALHALNHESFELVILDLGLPRLDGL 75 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++L+ R G PVL+LTARDA ++R+ GL GADDYL KPF + E+ ARL AL+RR+ Sbjct: 76 ELLKRLRAAGNPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVAELKARLRALLRRSF 135 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + L + ++LDP + + G P+ L KEF LL L+ GRVL+R +++ LY Sbjct: 136 NRPEPVLEYRGILLDPVNQQVSYQGTPINLPRKEFVLLHELLAQPGRVLTRDRLQQVLYG 195 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE 218 WDE+V SNA+EVH+HHLR+K + IRTV G+GY + + Sbjct: 196 WDEDVESNALEVHIHHLRKKFFPELIRTVRGVGYLVDK 233 >UniRef50_O34903 Uncharacterized transcriptional regulatory protein ykoG n=5 Tax=Bacillales RepID=YKOG_BACSU Length = 228 Score = 318 bits (816), Expect = 9e-86, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 129/223 (57%), Gaps = 7/223 (3%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 IL++ED+ I ++ L G+SV G +G +A Y V+LD+ LPG+ G + Sbjct: 5 HILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGLSGLE 64 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 +LR R+ + PV++LTARD++ ++V GL +GA+DY+ KPF + E+ AR+ A +R+ Sbjct: 65 VLRRLRKTDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQNGT 124 Query: 122 QASNE---LRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 + + L + ++ ++ R + + L P+EF LL ++++ +VL+R+ I + Sbjct: 125 KTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILSSV 184 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTLG 217 + +D +N V+V++ ++R+KL + I T+ G+GY + Sbjct: 185 WGFDYIGDTNVVDVYIRYIRKKLDYPYEKQLIHTIRGVGYAIK 227 >UniRef50_O07776 Transcriptional regulatory protein tcrA n=21 Tax=Actinobacteria (class) RepID=TCRA1_MYCTU Length = 253 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 86/221 (38%), Positives = 123/221 (55%), Gaps = 4/221 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RIL++ED+ + + L++ G +VD GR A+ YDAV+LD+ LPG+DG + Sbjct: 24 RILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGFE 83 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + R + PVL+LTAR A+ +R+ GL GADDYL KPF L E+ ARL AL RR Sbjct: 84 VCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGPI 143 Query: 122 QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTW 181 L G++ LDP + A + L KEF LLE L+R G V +R + E+ + Sbjct: 144 PRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWDA 203 Query: 182 DEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTLGE 218 E SN V+V++ +LR K+ F + T+ G GY L + Sbjct: 204 AYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRLRK 244 >UniRef50_B8G179 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiales RepID=B8G179_DESHD Length = 234 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 80/223 (35%), Positives = 132/223 (59%), Gaps = 7/223 (3%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +ILL+EDD +I + + L + G++V +G + E L D V+LD+ LP +DG D Sbjct: 3 KILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPELDGLD 62 Query: 62 ILREWR--EKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMR-- 117 + ++ R ++ P+++L+ARD +A+RV GL LGADDY+ KPF+ E+ AR++A +R Sbjct: 63 VCKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIKARLREE 122 Query: 118 -RTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEE 176 R + L G++ + P + T+ GE +TL KEF LL + M+ +V SR+ + + Sbjct: 123 RRNSTPPPLSLTWGDLEIWPESYMVTIKGEQVTLTGKEFELLHIFMKRPNQVFSREYLLQ 182 Query: 177 KLYTWDEEVTSNAVEVHVHHLRRKLG--SDFIRTVHGIGYTLG 217 K++ + + V+VH+ +LR KL S I +V G+GY L Sbjct: 183 KVWGYTVSGDTRTVDVHISNLRSKLKSVSPIIESVRGVGYRLA 225 >UniRef50_UPI00016B25CE two component transcriptional regulator, winged helix family protein n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B25CE Length = 224 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 81/224 (36%), Positives = 131/224 (58%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGM--D 58 MRIL++ED+ + I L G+++D +G + PYDA+I+D +PG D Sbjct: 1 MRILIVEDEKKLARAISRTLKNEGYAIDIEYNSSEGYAMASTQPYDALIIDRMMPGDFSD 60 Query: 59 GRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR 118 G D+L++ R+ G P ++LTA ++++ GL GADDYL KPFA+ E+ ARL A++RR Sbjct: 61 GLDMLKKLRKDGISTPAIVLTALGETSQKITGLDAGADDYLAKPFAIDELLARLRAILRR 120 Query: 119 TNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 L+ G + +D R + + L KE+ALL+ LM+++G+ LS++ I E + Sbjct: 121 PKKAQPTILKVGKLHIDTTNRTVEFDNKKIDLTAKEYALLQYLMKSSGQTLSKEQIMEHV 180 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTLGE 218 + +D ++ N VE ++ LR+K+ +I+TV GIGY L E Sbjct: 181 WNFDADILPNTVEAYIKALRKKIDEKYKVKYIKTVRGIGYRLEE 224 >UniRef50_D2BG66 DNA-binding response regulator, two-component system, OmpR family n=8 Tax=Bacteria RepID=D2BG66_DEHSV Length = 256 Score = 317 bits (815), Expect = 1e-85, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 127/227 (55%), Gaps = 11/227 (4%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +IL++EDD + + + L+K G++++ G + VILD+ LPG+DG + Sbjct: 31 KILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTYRLFKPSLVILDVMLPGIDGFE 90 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + R R + P+L+LTAR + +++V GL GADDYL KPF + E+ AR++AL+RR+ Sbjct: 91 LCRLIRTES-SVPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALLRRSQT 149 Query: 122 QASNE-----LRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEE 176 Q S L+ G++ + + + G L PKEF L +++N RV SR+ + E Sbjct: 150 QNSQTETTGGLKIGDLEIFIERHLVMRNGVALDFSPKEFDLFSFMVQNRCRVFSREQLLE 209 Query: 177 KLYTWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218 K++ +D + V+VH+ LR+K+ +D + TV G GY E Sbjct: 210 KVWGYDYPGWTRTVDVHISWLRQKIEADPSSPRHLITVRGTGYKFEE 256 >UniRef50_C7PP48 Two component transcriptional regulator, winged helix family n=20 Tax=Bacteria RepID=C7PP48_CHIPD Length = 235 Score = 317 bits (815), Expect = 2e-85, Method: Composition-based stats. Identities = 81/234 (34%), Positives = 128/234 (54%), Gaps = 15/234 (6%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M++LLIED+ + I+ L++ G+ V G+ G + + +ILD+ LPGM+G Sbjct: 1 MKLLLIEDEPSVVSFIRRYLAEAGYDVSVALDGQSGLQMATENNFQLIILDVMLPGMNGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + + R++ P+L+LTA + V GL GADDYL KPF E+ AR+ +L+RR N Sbjct: 61 AVCKALRQQQLTTPILMLTALGSTENVVAGLDSGADDYLVKPFKQAELLARIRSLLRRNN 120 Query: 121 -----------GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVL 169 N L+ ++ LD + A+ G+ + L E+ LLE +MRN RVL Sbjct: 121 DTAAAATPAVTQSNGNVLKVADLELDLNTKSASRYGQTIVLTATEYRLLEYMMRNPKRVL 180 Query: 170 SRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTLGEK 219 SR I E ++ D + + V+V+V++LR+K+ I+TV G+GY L E+ Sbjct: 181 SRMEILENVWGVDFNMNTKVVDVYVNYLRKKVNRKDQPALIQTVVGMGYMLKEE 234 >UniRef50_Q01473 Protein rcaC n=1 Tax=Fremyella diplosiphon RepID=RCAC_FREDI Length = 651 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 85/222 (38%), Positives = 126/222 (56%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+ILL+EDD ++ + L+ + VD G G + YD +ILD+ LP +DG Sbjct: 1 MKILLVEDDDVLIKVLTKNLTTHHYIVDVVKDGEMGWTYGSTFEYDLIILDIMLPNLDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + + +R +G P+L+LTA+D + +V+GL GADDY+ KPF IE+ AR+ AL+RR + Sbjct: 61 SLCKRFRAQGYTVPILLLTAQDNITAKVQGLDAGADDYVVKPFDPIELIARIRALLRRGS 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 L G+++L+P T G PL L E+ LLELL+RN V S + + +KL++ Sbjct: 121 NNPFPLLTWGDLLLNPSTCEVTYNGCPLNLTTMEYDLLELLLRNCQHVFSSEELLDKLWS 180 Query: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLG 217 ++ + V HV LR KL DFI T+HG GY L Sbjct: 181 SEDFPSEATVRSHVRRLRHKLVAAGAPHDFIATMHGRGYYLK 222 Score = 94.0 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 5/119 (4%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 ++++++DD + T L GF V +Q L + DA++LD+ +P ++G + Sbjct: 527 KVMILDDDQDWLRTLPTLLKPWGFKVTTLADPQQFWTVLQAVTPDALVLDVNMPQINGFE 586 Query: 62 ILREWRE--KGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR 118 + + R QR PVL L+ + + +G DDYLCKP +E+A R+ +RR Sbjct: 587 LCQLLRSDPHWQRLPVLFLSVLTDPTTQNQAFAVGGDDYLCKPVKGVELANRI---LRR 642 >UniRef50_D2QX61 Two component transcriptional regulator, winged helix family n=3 Tax=Planctomycetaceae RepID=D2QX61_9PLAN Length = 223 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 95/221 (42%), Positives = 139/221 (62%), Gaps = 4/221 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M++L+IEDD ++G ++ GLS+ G W G+ G E + +DA++LD+ LP G Sbjct: 1 MKLLVIEDDPVLGKALERGLSEAGHFCQWERTGKSGLEQASTQQFDALVLDVMLPDTTGM 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +++R+ R G PVL+LTA ++ +RV GL GADDYL KPFA E+ ARL+A+ RRT Sbjct: 61 EVVRKIRHDGIGTPVLMLTALGSVDDRVAGLNSGADDYLVKPFAFPELLARLDAISRRTK 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + S++L+ G ++LD R T L+L P EF+LLE LMR AG+V++RK++ E L+ Sbjct: 121 DRPSSQLKVGPLVLDLTNRKVTRNDSELSLTPTEFSLLEFLMRYAGQVVTRKMLCEHLWE 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYTLG 217 D E +N VEVH++ LR K+ I+TV G GY L Sbjct: 181 SDWEGVTNVVEVHINRLRGKIDRGFSEPLIQTVRGRGYVLR 221 >UniRef50_A4J2J4 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J2J4_DESRM Length = 223 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 84/221 (38%), Positives = 133/221 (60%), Gaps = 5/221 (2%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 R+L+I+DD I ++ L+ G+ V+ G +G P + +ILD+ LPG+DG + Sbjct: 4 RVLVIDDDPKITAMLQRALTYEGYRVEVANDGYKGMNMAKENPPELLILDIMLPGLDGWE 63 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 I + +R+ P+LIL+ARD + +V+GL LGADDYL KPFAL E+ AR++AL+RR Sbjct: 64 ICQRFRKDNF-TPILILSARDEVESKVKGLNLGADDYLGKPFALEELLARVQALLRR-RI 121 Query: 122 QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTW 181 A+ ++ ++ +D R AG LTL +EF LL M + +VL+R+ I ++++ Sbjct: 122 TANKVIQFSDLKMDLEAREVRRAGNLLTLTSREFDLLAHFMHHPNQVLTREQIIDRVWGL 181 Query: 182 DEEVTSNAVEVHVHHLRRKLGS---DFIRTVHGIGYTLGEK 219 D SN +EV+++ LR+K+ I TV G+GY L E+ Sbjct: 182 DFTGGSNVLEVYINMLRQKIEDYGSRIIHTVRGVGYVLKEQ 222 >UniRef50_B4WPA6 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WPA6_9SYNE Length = 685 Score = 317 bits (813), Expect = 2e-85, Method: Composition-based stats. Identities = 95/223 (42%), Positives = 134/223 (60%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILLIEDD ++ + L + ++VD GR G E SA YD +++D+ LP +DG Sbjct: 1 MRILLIEDDEVLTSALVESLQQQRYTVDTADDGRFGLEYAESASYDLLLVDVGLPRLDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + RE R++ P+L++TA+DA E++ GL GADDYL KP + E+ ARL AL+RR Sbjct: 61 SLCRELRDRNYTTPILLMTAKDAADEKIRGLDAGADDYLTKPLDINELHARLRALLRRGE 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 ++ L G + LDP T A PL L PKE++LLEL +RN RV SR I E L+T Sbjct: 121 VSPTSILEMGQLHLDPVSCEVTYADAPLKLTPKEYSLLELFLRNPSRVFSRSHIIEHLWT 180 Query: 181 WDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTLGEK 219 +D+ ++V+ HV LRR+L +I V+G+GY L K Sbjct: 181 FDDPPLEDSVKAHVKGLRRRLKQAGADGWIENVYGMGYKLSPK 223 Score = 85.5 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 8/124 (6%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 +L ++DD ++ + L GFS+ + + L D +ILD+ +PG DG ++ Sbjct: 403 LLAVDDDPILLGTLSPLLEPWGFSITTLADSTKFWQTLTKVDPDLLILDIEMPGPDGIEL 462 Query: 63 LREWREKGQR------EPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALM 116 R + P+L LTAR+ A V DDY+ KP E+ R+ + Sbjct: 463 CHAVRNDPRDGGHWQSLPILFLTARENAAAEVFAAGA--DDYVVKPIVGPELITRINNRL 520 Query: 117 RRTN 120 R Sbjct: 521 ERAR 524 >UniRef50_C7LY45 Two component transcriptional regulator, winged helix family n=2 Tax=Actinobacteria (class) RepID=C7LY45_ACIFD Length = 236 Score = 316 bits (811), Expect = 4e-85, Method: Composition-based stats. Identities = 85/222 (38%), Positives = 129/222 (58%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L+++D+ + +K GLS GF+VD + G G + APYD ++LD+ LPG++G Sbjct: 1 MRLLIVDDEENLLASLKRGLSAEGFAVDTASDGTTGLDMARHAPYDCIVLDIMLPGVNGF 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + RE+ P+L+LTA+D + E L GADD L KPF+ + AR+ AL+RR Sbjct: 61 KFTQLLREERNWTPILMLTAKDGEYDEAEALDTGADDVLKKPFSFTVLVARIRALLRRNV 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 L+ G++ LDP T + L +EF+ LELL+RN G VL ++ I ++ Sbjct: 121 ESHPPILQAGDLTLDPASHRVTRGNVTIDLTTREFSFLELLLRNKGHVLRKQDIIAHVWD 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTLGE 218 +D E SN VEV++ +LR+K+ F I T+ G+GY L E Sbjct: 181 YDFEGDSNIVEVYIGYLRKKIDVPFGTKAITTIRGVGYRLEE 222 >UniRef50_Q1AZL3 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=Q1AZL3_RUBXD Length = 227 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 93/220 (42%), Positives = 127/220 (57%), Gaps = 4/220 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L++ED+ I ++ GLS G+S G G D V+LD+ LPG+DGR Sbjct: 1 MRVLIVEDEPGIVRMLERGLSAQGYSCLSAEDGETGLRMALEEDVDVVLLDIMLPGLDGR 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++LR R + PVL+LTARD + +V L GADDYL KPFA E+ AR+ AL+RR + Sbjct: 61 EVLRRLRLRRPGLPVLMLTARDEVETKVGSLDAGADDYLTKPFAFEELLARIRALVRRAD 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 S LR G++ LD R AG + L +EFALLE LMR+ +VLSR+ I ++ Sbjct: 121 QPESTALRAGDLKLDLLSRRVWRAGRQVELSSREFALLEYLMRHPRQVLSRQQILSAVWD 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYTL 216 + + SN V+V+V +LRRKL I TV G GY Sbjct: 181 YAFDPGSNVVDVYVRYLRRKLDRPGEPSLITTVRGAGYRF 220 >UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD5_9FIRM Length = 235 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 80/235 (34%), Positives = 130/235 (55%), Gaps = 18/235 (7%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL+++D+ I + + L K G+ V+ GR + A D V+LD+ LP +DG Sbjct: 1 MQILVVDDEAPIRELLSFNLKKSGYEVEMAADGRTALQRAPEA--DLVLLDIMLPEVDGL 58 Query: 61 DILREWRE--KGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR 118 ++ R+ + + P+++LTA+ +RV GL LGADDY+ KPF++ E+ AR++A++RR Sbjct: 59 EVCRQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLRR 118 Query: 119 T---------NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVL 169 + N + L G + LD A L + + L PKE+ LL+LL+ N GR Sbjct: 119 SASVQKGSRENKEREESLTIGGLRLDFSSYQAWLHDKTIALTPKEYELLKLLVTNPGRAF 178 Query: 170 SRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDF-----IRTVHGIGYTLGEK 219 SR + E+++ ++ + V+VH+ HLR KL D I TV G+GY + Sbjct: 179 SRDELLERIWGYEYYGDTRTVDVHIRHLRAKLKDDPTVSDAIETVRGVGYRFARR 233 >UniRef50_A6CDX9 Two component transcriptional regulator, winged helix family protein n=2 Tax=Bacteria RepID=A6CDX9_9PLAN Length = 231 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 98/219 (44%), Positives = 129/219 (58%), Gaps = 3/219 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RIL++ED+ I D + GLS+ G+ V+ GR G L S +D VILD LP DG Sbjct: 4 RILVVEDEARIADFLVRGLSEEGYGVEHAEDGRIGWLLLNSETWDLVILDWWLPVEDGIQ 63 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 +LR +R+K + PVL LTARDA+ ERV GL GADDYL KPFA E+ AR+ AL+RR Sbjct: 64 LLRRFRQKNRTTPVLFLTARDAVTERVTGLDAGADDYLTKPFAFDELLARVRALLRRPGQ 123 Query: 122 QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTW 181 + L + ++ D + T G PL L KEF+LL +RN G+VLSR I + ++ Sbjct: 124 ASGVVLEYADIRADLETQRVTRGGTPLDLTAKEFSLLLFFLRNPGKVLSRTRIYDTVWDD 183 Query: 182 DEEVTSNAVEVHVHHLRRKL---GSDFIRTVHGIGYTLG 217 + SN +EVHV LR KL G I+T+ G GY L Sbjct: 184 SYDGLSNTLEVHVKELRHKLEACGPRVIQTLRGRGYVLE 222 >UniRef50_C7N0N0 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=42 Tax=Bacteria RepID=C7N0N0_SLAHD Length = 240 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 117/225 (52%), Gaps = 9/225 (4%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RILL+ED+ I D + L + + V G+ E +D VILDL LP + G Sbjct: 10 RILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLMLPRVPGER 69 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + R R P+++LTA+ + +R+ GL LGADDYL KPF+ E+ AR+ AL+RR + Sbjct: 70 VCRAIR-DNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRRVHA 128 Query: 122 QASN---ELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 + L G + +D + G+ + L EF LL L R GRV SR + EK+ Sbjct: 129 DSEPQREVLEFGELTIDVSGHKVLVGGKEVDLTASEFKLLTTLSRYPGRVYSRMELVEKV 188 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLG-----SDFIRTVHGIGYTLGE 218 +D E ++ HV +LR K+G ++ TVHG+GY + Sbjct: 189 LGYDFEGYERTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRFED 233 >UniRef50_B1YK44 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=B1YK44_EXIS2 Length = 228 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 74/222 (33%), Positives = 124/222 (55%), Gaps = 6/222 (2%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +IL+++D+ + D + + L K + + G++ + + + V+LD+ +P MDG Sbjct: 7 KILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMPEMDGLT 66 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 RE P+++LTAR +R+ GL++GADDY+ KPF+ E+ AR+EA +RR++ Sbjct: 67 ACMRIRE-FSNVPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATLRRSHR 125 Query: 122 ---QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 S L G + LD R ++G+P++L KEF LL L ++N +V SR+ + +++ Sbjct: 126 FTVDQSATLTIGKLELDTESRSVHVSGKPISLTRKEFDLLHLFVQNNDKVFSREQLLDQI 185 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGS--DFIRTVHGIGYTLGE 218 + D V+ H+ LR KLG I+TV GIGY E Sbjct: 186 WGADYIGNLRTVDTHIKTLRLKLGEAGGSIQTVWGIGYKFEE 227 >UniRef50_B2IZ13 Sensor protein n=11 Tax=Cyanobacteria RepID=B2IZ13_NOSP7 Length = 989 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 85/222 (38%), Positives = 128/222 (57%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL++EDD L + L+ ++V+ T G + + + YD ++LD+ LP +DG Sbjct: 1 MKILIVEDDGLNAYTLTNLLTNQNYAVEVATDGDAAWDCIQAYDYDLILLDVVLPKLDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + R+ R + P+L++T R++ E+ GL GADDYL KPF + E+ AR+ AL+RR Sbjct: 61 SLCRKIRSNNLQMPILLMTGRNSSHEKAIGLDAGADDYLVKPFDIEELVARIRALLRRPA 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + L G + LDP A A L L PKEFALLEL +RN+ RV S +I E L++ Sbjct: 121 VTSPPVLESGKLRLDPSSCEAVYARNLLPLTPKEFALLELFLRNSRRVFSCGMILEHLWS 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGS-----DFIRTVHGIGYTLG 217 +++ AV H+ LR+KL + D + TV+GIGY L Sbjct: 181 YEDTPQEEAVRTHIKGLRQKLKAVGAPGDLVETVYGIGYRLK 222 Score = 89.4 bits (222), Expect = 8e-17, Method: Composition-based stats. Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 2/113 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +IL+++DD I ++T LS G Q E L + D +ILD+ LP ++G + Sbjct: 397 KILVVDDDPQIQALLQTLLSPWGLRAIALENPLQFWETLEAVAPDMLILDVELPYINGIE 456 Query: 62 ILREWREKG--QREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARL 112 + R R P+L LT + +GADD++ KP E+ R+ Sbjct: 457 LCRLVRNDSHWSELPILFLTVHSDAEMVNQVFSIGADDFVSKPIVGPELVTRI 509 >UniRef50_A6X2C4 Two component transcriptional regulator, winged helix family n=59 Tax=cellular organisms RepID=A6X2C4_OCHA4 Length = 255 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 80/222 (36%), Positives = 126/222 (56%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL+IEDD ++ ++ G S D G G + YD +++D LP DG Sbjct: 21 MKILVIEDDREAARYLEKAFTEAGHSADIAGDGETGYTLAENGSYDVLVVDRMLPKRDGL 80 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++ R +G PVLIL+A + +RV GLR G DDYL KP+A E+ AR+E L RR++ Sbjct: 81 SVVAGLRARGMETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 140 Query: 121 GQASNEL-RHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 + ++ + R G++ LD A +TL+P+EF LLE LMR+AG+V++R ++ E ++ Sbjct: 141 PREADTIYRVGDLELDRLAHTARRQDVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 200 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTLG 217 + + +N ++VH+ LR K+ + TV G GY L Sbjct: 201 DYHFDPQTNVIDVHISRLRSKIEKGFDGPLLHTVRGAGYMLK 242 >UniRef50_UPI00017468BB two component transcriptional regulator, winged helix family protein n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017468BB Length = 227 Score = 313 bits (803), Expect = 3e-84, Method: Composition-based stats. Identities = 82/217 (37%), Positives = 127/217 (58%), Gaps = 1/217 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L++EDD + + L + ++VD G +G + YD ++LD+ LPG+ G Sbjct: 12 MRVLVVEDDPDLRRSLVATLREENYAVDAAGDGAEGFQRALENEYDVIVLDVMLPGLSGW 71 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + L++ R PVL+LTARDA+ +RV+GL GADDYL KPF + E+ AR+ AL+RR Sbjct: 72 EFLQKLRPTKTS-PVLMLTARDAVQDRVKGLNQGADDYLTKPFDIEELLARIRALIRRAA 130 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 GQ L ++ +D R GE + + +E+ L+E L + G V+SR + E L+ Sbjct: 131 GQPQPVLTIRDLSIDTAARKVLWKGEEVPVTAREYTLIEYLALHQGEVVSRTTLYEHLFD 190 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLG 217 D+ SN ++VHV +LR+KL + I T G GY++ Sbjct: 191 EDDSTLSNLLDVHVSNLRKKLAPELITTRRGHGYSIE 227 >UniRef50_B4WG55 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WG55_9SYNE Length = 636 Score = 313 bits (803), Expect = 3e-84, Method: Composition-based stats. Identities = 79/222 (35%), Positives = 122/222 (54%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LL++DD + + + L+ + VD G G + YD V+LD LP + G Sbjct: 1 MRVLLVDDDNALASLLTSQLAAHNYIVDHVADGETGWAYASTFDYDLVVLDWMLPQLSGV 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + + R +G P+L+LT ++ ++EGL GADDY+ KPF + E+ AR+ L+RRT Sbjct: 61 HLCQRLRRQGCGVPILLLTVKNEQRNKIEGLEAGADDYVVKPFDMDELLARIRVLLRRTP 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + L GN+ LDP +G+ +TL KE++LLEL +R+ +V S ++ KL++ Sbjct: 121 HETEPVLIWGNLQLDPISTQVHYSGQLVTLTAKEYSLLELFLRSPHQVYSATVLLGKLWS 180 Query: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLG 217 E + V H+ LR+KL D I TVHG+GY L Sbjct: 181 SQEFPSEATVRSHLRRLRQKLSQAGAAPDLIETVHGLGYRLK 222 Score = 79.0 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 10/128 (7%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +I++++DD + L F + T ++ D V+ D+ +P ++G + Sbjct: 510 KIMIVDDDAHYLKQVVQLLHPWNFEITPLTNPQRFWTLFNQVLPDLVVFDVEMPQINGFE 569 Query: 62 ILREWRE--KGQREPVLILTARDALAERVEGLRLGADDYLCKP-----FALIEVAARLE- 113 + R R K Q P++ L+ A++ + +GADDY+ KP FA + RL Sbjct: 570 LARVLRSHTKWQHLPIVFLSVHGDAAKQEQAFAIGADDYITKPVHGKAFATR-LLNRLNQ 628 Query: 114 -ALMRRTN 120 A +RR Sbjct: 629 TADIRRPA 636 >UniRef50_D1B9J7 Two component transcriptional regulator, winged helix family n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B9J7_THEAS Length = 226 Score = 312 bits (802), Expect = 4e-84, Method: Composition-based stats. Identities = 89/221 (40%), Positives = 135/221 (61%), Gaps = 4/221 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L+IED+ + ++ G ++G VD GR G + + S YD VILD+ LP MDG Sbjct: 1 MRLLIIEDNEDLCQLLREGFEELGHEVDTAGDGRNGLDLIRSGKYDCVILDIMLPEMDGF 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +++ + R++G PV++LTA+D++ +RV GL GADDYL KPF E+ AR+ ALMRR+ Sbjct: 61 EVMDQVRDEGHDVPVIMLTAKDSVEDRVHGLEQGADDYLTKPFDFKELMARVNALMRRSG 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 Q + L+ G + LDP R + + L+ +EF +LELLMR +V SR I +++ Sbjct: 121 DQRRSILKCGPLTLDPVARECRVGDIKVPLRRREFDILELLMRYENQVFSRDKIIAQVWQ 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTLG 217 + + TSN V+VH+ +LR KL + TV G+GY + Sbjct: 181 KEYDGTSNVVDVHIKYLRDKLRPFNLDMMVVTVRGVGYKVA 221 >UniRef50_Q1IVX4 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1IVX4_DEIGD Length = 225 Score = 312 bits (802), Expect = 4e-84, Method: Composition-based stats. Identities = 88/221 (39%), Positives = 129/221 (58%), Gaps = 6/221 (2%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 +L+IED+ I I+ L+ G++ + G G D VILDL LP +DG ++ Sbjct: 7 VLVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKFREVNPDLVILDLMLPVLDGLEV 66 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQ 122 R R+ P++ILTA+D + ++VEGL GADDYL KPF++ E+ AR+ A +RR N Sbjct: 67 ARRIRKTSN-TPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRRVNPA 125 Query: 123 ASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTWD 182 + E+R +++++ R G + L KEF LLELL RN G+V SR IEEK++ + Sbjct: 126 VTGEVRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEEKVW-PE 184 Query: 183 EEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYTLGEK 219 SN V+V++ +LRRKL I TV G+GY L E+ Sbjct: 185 YTGGSNVVDVYIGYLRRKLEEGGERRLIHTVRGVGYVLREE 225 >UniRef50_P94413 Uncharacterized transcriptional regulatory protein yclJ n=77 Tax=Bacilli RepID=YCLJ_BACSU Length = 227 Score = 312 bits (802), Expect = 5e-84, Method: Composition-based stats. Identities = 76/227 (33%), Positives = 125/227 (55%), Gaps = 10/227 (4%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL+IED++ + + K GF ++ G +G + +D +ILD+ LP MDG Sbjct: 1 MKILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGV 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 I R+ RE P+++LTA+D +++V G +GADDY+ KPF+ + + AR++A++RR Sbjct: 61 TICRKIRETS-TVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYK 119 Query: 121 GQASNELRHGNVM-----LDPGKRIATLAGEPLT-LKPKEFALLELLMRNAGRVLSRKLI 174 + + ++ R L GEP+ L PKEF LL L++N +V SR+ + Sbjct: 120 ATGKAVIDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQL 179 Query: 175 EEKLYTWDEEVTSNAVEVHVHHLRRKL---GSDFIRTVHGIGYTLGE 218 E+++ + V+VH+ LR+KL F+ TV G+GY E Sbjct: 180 LEQVWGYQFYGDERTVDVHIKRLRKKLASEDKPFLYTVWGVGYKFDE 226 >UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6VLR9_LACPJ Length = 242 Score = 312 bits (801), Expect = 5e-84, Method: Composition-based stats. Identities = 74/232 (31%), Positives = 124/232 (53%), Gaps = 17/232 (7%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +IL+++D+ I + L + G+ V T G + + ++LDL LP +DG + Sbjct: 5 KILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQSFTCILLDLMLPKLDGME 64 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + ++ R++ + P++I+TA++ ++V GL LGADDY+ KPF+ EV AR++A++RRT Sbjct: 65 VTKKLRQEKVQTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIRRTTP 124 Query: 122 QA------------SNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVL 169 + G++ +D K G+ ++L PKEF LL + GRVL Sbjct: 125 DEPVTPPAPMPPANRAVMLVGDLQIDQNKYRVARNGKNISLTPKEFELLVYFVEREGRVL 184 Query: 170 SRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTL 216 SR I ++ +D + V++H+ HLR K+ +D IRTV G GY Sbjct: 185 SRDAILNHVWGYDYASETRIVDIHISHLREKIEADPKQPRLIRTVRGFGYEF 236 >UniRef50_B5W2T9 Multi-component transcriptional regulator, winged helix family n=2 Tax=Arthrospira RepID=B5W2T9_SPIMA Length = 774 Score = 312 bits (801), Expect = 6e-84, Method: Composition-based stats. Identities = 82/222 (36%), Positives = 117/222 (52%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+ILL++DD + + L + VD T G G + S Y VILD+ LP ++G Sbjct: 1 MKILLVDDDQYLNQQLSKSLKAHNYVVDIATDGESGWNYIESFEYSLVILDIMLPKLNGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + R+ R + PVL+LTARD+ ++V GL GADDYL KP E+ AR+ AL+RR Sbjct: 61 ALCRKLRSHNYQMPVLLLTARDSCEDKVLGLDAGADDYLVKPIRAEELIARMRALLRRAT 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + G++ L+P K + L L PKE+ L+EL +R+ RV S I E L++ Sbjct: 121 ISLPPVIHWGDLTLNPAKCEISYQKSVLPLTPKEYGLMELFIRSPYRVFSYDSIIEHLWS 180 Query: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLG 217 +E N V H+ LR KL I V+GIGY + Sbjct: 181 IEEPAADNTVRAHIKSLRNKLKDAGGDPKLIENVYGIGYRIK 222 Score = 88.6 bits (220), Expect = 1e-16, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 2/115 (1%) Query: 8 DDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWR 67 DD I + ++ L +G V R+ + L + D +I+D+ +P +G D+ + R Sbjct: 493 DDPQILELLEALLCPLGLEVKTLNTPRKFWQVLEISNPDLLIIDVEMPHYNGIDLCQVIR 552 Query: 68 EKGQR--EPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + + P+L+LT R E R GADD++ KP E+ ARL + + R+ Sbjct: 553 NEPRWRYLPILVLTNHTDPETRAELFRAGADDFISKPVVGPELIARLFSRLHRSR 607 Score = 39.3 bits (92), Expect = 0.082, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 2/102 (1%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPG--MDGR 60 +L+++ D ++G+ I G + + ++L+L P DG Sbjct: 364 LLIVDHDTILGEQIIREAHSRGLEARLAPGVGIARAMMVEYQPSIILLELNFPKPEEDGL 423 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKP 102 +L + PV+I + R + +R+ RLG+ +L KP Sbjct: 424 MLLEDIAYHHPEIPVVIFSRRSSFIDRLTVCRLGSRAFLQKP 465 >UniRef50_Q0ASG1 Two component transcriptional regulator, winged helix family n=15 Tax=Proteobacteria RepID=Q0ASG1_MARMM Length = 229 Score = 312 bits (800), Expect = 8e-84, Method: Composition-based stats. Identities = 74/222 (33%), Positives = 117/222 (52%), Gaps = 7/222 (3%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +L++ED+ + ++ L K G+SV G D V++D LP + G + Sbjct: 4 HVLVVEDEDALATLLQYNLEKEGYSVAVARDGEDALMQAEETTPDLVMVDWMLPKVSGIE 63 Query: 62 ILREWR--EKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR- 118 + R R ++ P+++LTAR +RV GL GADDY+ KPF++ E+ AR+ A++RR Sbjct: 64 VCRRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAVLRRI 123 Query: 119 TNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 G A + + G++ +D A + L P EF LL+ LM++ GRV SR+ + + + Sbjct: 124 RPGLAEDVIEAGDITMDRVAHRVKRADREIHLGPTEFRLLDYLMQHPGRVFSREQLLDAV 183 Query: 179 YTWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 216 + D V + V+VHV LR+ L D IRTV GY Sbjct: 184 WGSDVYVEARTVDVHVGRLRKALNNKEERDPIRTVRSAGYAF 225 >UniRef50_Q1IUY4 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IUY4_ACIBL Length = 232 Score = 311 bits (799), Expect = 9e-84, Method: Composition-based stats. Identities = 82/218 (37%), Positives = 128/218 (58%), Gaps = 4/218 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL+ ED+ + + ++ GL++ G SV G + S +DA++LD+ LPGMDG Sbjct: 1 MRILVAEDEKRLLELLRNGLAEEGHSVITSMNGVDALDIAMSGEFDALLLDVMLPGMDGF 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++ R R KG++ P+L+LTARDA ++ + GL GADDY+ KPF+ E+ ARL A+ RRT Sbjct: 61 EVARRLRHKGRQVPILMLTARDAESDIIRGLDNGADDYVTKPFSFSELLARLRAVTRRTG 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 S+ L ++ LD P+ L EF LL+ LM+NAGR +SR+ + ++ Sbjct: 121 PHRSSTLVCEDLTLDSASHEVFRGDRPIHLTRTEFLLLQKLMQNAGRPVSRQSLIGNVWG 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGY 214 +D + +N ++ + LR+K+ I+TV G GY Sbjct: 181 YDRAIENNTLDAFIRLLRQKVDTQGHPKLIQTVRGFGY 218 >UniRef50_A0PWB4 Response regulator mprA n=284 Tax=Bacteria RepID=MPRA_MYCUA Length = 232 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 92/226 (40%), Positives = 139/226 (61%), Gaps = 9/226 (3%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RIL+++DD + + ++ LS G++V+ G + E + S DA++LD+ +P +DG + Sbjct: 4 RILVVDDDRAVRESLRRSLSFNGYTVELAHDGVEALEMIASDRPDALVLDVMMPRLDGLE 63 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN- 120 + R+ R G P+L+LTARD+++ERV GL GADDYL KPFAL E+ AR+ AL+RRT Sbjct: 64 VCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTKL 123 Query: 121 ----GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEE 176 S + ++ LDP R T ++L EFALLE+L+ N RVL+R I E Sbjct: 124 EDDEAADSVAMTFSDLSLDPVTREVTRGARRISLTRTEFALLEMLIANPRRVLTRSRILE 183 Query: 177 KLYTWDEEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYTLGE 218 +++ +D + NA+EV+V +LRRK ++ I TV G+GY L E Sbjct: 184 EVWGFDFPTSGNALEVYVGYLRRKTEAEGEPRLIHTVRGVGYVLRE 229 >UniRef50_A7GKH0 Two component transcriptional regulator, winged helix family n=68 Tax=Firmicutes RepID=A7GKH0_BACCN Length = 238 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 76/228 (33%), Positives = 123/228 (53%), Gaps = 13/228 (5%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 +R+L+ +D+ I D +K L + ++VD G + + Y+ VILDL +P +DG Sbjct: 4 IRVLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLMMPKIDGI 63 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR-- 118 ++ R R P+L+LTA+D +++ GL +GADDY+ KPF++ EV AR++ALMRR Sbjct: 64 EVCRRLRN-NTNIPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKALMRRFL 122 Query: 119 -----TNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKL 173 N Q L + +D K I T+ + ++L KE LL+ N +V ++ Sbjct: 123 VLGSNANTQEKTILTFKGLTIDISKYIVTVGDKEISLTGKELELLKFFASNPEQVFTKTQ 182 Query: 174 IEEKLYTWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTL 216 + ++ + N V VH+ LR+K+ +D FI+TV GIGY Sbjct: 183 LFRNVWDSNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGYKF 230 >UniRef50_P66796 Transcriptional regulatory protein qseB n=58 Tax=Gammaproteobacteria RepID=QSEB_SALTI Length = 219 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 191/218 (87%), Positives = 206/218 (94%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD LIGDGIK GLSKMGFSVDWFT+GR GKEALYSAPYDAVILDLTLPGMDGR Sbjct: 1 MRILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 DILREWREKG++EPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEAL+RR + Sbjct: 61 DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 GQAS+ELRHG V L+PG +ATLAGEPL LKPKEFALLELL+RN GRVL RKLIEEKLY Sbjct: 121 GQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE 218 WD++V+SNAVEVHVHHLRRKLGS+FIRTVHGIGYTLG+ Sbjct: 181 WDDDVSSNAVEVHVHHLRRKLGSEFIRTVHGIGYTLGD 218 >UniRef50_Q88JD6 DNA-binding response regulator n=6 Tax=Gammaproteobacteria RepID=Q88JD6_PSEPK Length = 220 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 108/219 (49%), Positives = 143/219 (65%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LL+EDD+ +G+GI GL + G+++DW G G AL +D VILDL LP MDG Sbjct: 1 MRLLLVEDDIALGEGICDGLRQEGYTLDWLRDGVSGLHALQHETFDLVILDLGLPRMDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++LR R G PVLILTARDAL +R+ GL GADDYL KPF L E+ ARL AL+RR+ Sbjct: 61 ELLRRLRAGGDSLPVLILTARDALDDRIAGLDAGADDYLVKPFDLNELKARLRALLRRSV 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G+A + H V LDP + G + L PKE+ LL L+ G+V +R+ + + LY Sbjct: 121 GRAKVLIEHAGVSLDPTTQQVQYNGVEVVLTPKEYVLLHELLAQPGKVFTRERLTQLLYG 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK 219 WDEE SN +EV+++HLR+KL + IRTV GIGY + K Sbjct: 181 WDEEPESNTLEVNIYHLRKKLFNGLIRTVRGIGYLVEVK 219 >UniRef50_Q3SMF6 Two component Transcriptional regulator, Winged helix family n=9 Tax=Proteobacteria RepID=Q3SMF6_THIDA Length = 220 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 121/215 (56%), Positives = 159/215 (73%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD L+GDG+K GLS+ GF+VDW G AL + + AV+LDL LP DG Sbjct: 1 MRILLVEDDALLGDGLKAGLSQSGFAVDWLRDGEAAVTALTTERFAAVVLDLGLPRRDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L+ R +G PVL+LTARD L ++V GL LGADDY+ KPF L EVAARL ALMRR + Sbjct: 61 SVLQWLRGRGDPTPVLVLTARDQLEDKVRGLDLGADDYVLKPFDLDEVAARLRALMRRAH 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G+++ L+ G++ LDP R T G+P+ L +EF LL +L++++G VL+R+++EE+LYT Sbjct: 121 GKSAPLLKLGDIELDPAARSVTQRGQPVDLTGREFDLLHVLLQSSGHVLTRRMLEEQLYT 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYT 215 WDE V SNA+EVHVHHLRRKLG+D IRTV G+GY Sbjct: 181 WDEGVGSNALEVHVHHLRRKLGNDVIRTVRGVGYM 215 >UniRef50_D2PLZ1 Two component transcriptional regulator, winged helix family n=5 Tax=Actinomycetales RepID=D2PLZ1_9ACTO Length = 236 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 93/223 (41%), Positives = 128/223 (57%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL++ED+ + I GL GF+V+ G G YDA++LDL LPG+ G Sbjct: 1 MRILVVEDERRLARAIGHGLEDHGFTVELAHDGETGLWKGREQDYDAIVLDLMLPGLSGD 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++ R+ R G P+LILTAR GL LGADDYL KPF+ + ARL AL+RRT Sbjct: 61 EVCRQLRAAGCWTPILILTARVGAEAEAGGLNLGADDYLRKPFSYQVLIARLNALLRRTA 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 L G+++LDP +R P+ L +EF++LE LMRNAG S+ I + ++ Sbjct: 121 PARPVNLVVGDLVLDPARRTVRRGTTPIELTRREFSVLEYLMRNAGSTRSKAEILDHVWG 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTLGEK 219 D + N VEV+V +LRRK+ F IRTV G GY +G++ Sbjct: 181 ADFDREPNVVEVYVGYLRRKIDQPFGTGSIRTVRGHGYLMGDE 223 >UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostridiales RepID=Q67MV1_SYMTH Length = 229 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 131/227 (57%), Gaps = 10/227 (4%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 IL+++D+ + G++ L + GF V + GR+ + +D ++LDL LPG+DG Sbjct: 3 HILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVDGLT 62 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR--- 118 I RE R G P+++LTA+ +++ GL LGADDY+ KPF E+ AR+ A++RR Sbjct: 63 ICREVRAAGM-TPIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRRAEA 121 Query: 119 -TNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEK 177 + + L G+++L P +R A +AG PL L +E+ LLELL R+ G V +R+ + + Sbjct: 122 ASRQDRAGRLVVGDLVLHPRQRRAEVAGRPLELTAREYDLLELLARHPGVVYTRQELLDL 181 Query: 178 LYTWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGEK 219 ++ +D V+VHV +R KL D ++RT G+GY L + Sbjct: 182 VWGYDFAGDERTVDVHVRRIREKLEEDPSRPRYLRTKWGVGYYLEAE 228 >UniRef50_Q8DHN5 Two-component response regulator n=2 Tax=Chroococcales RepID=Q8DHN5_THEEB Length = 229 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 88/224 (39%), Positives = 128/224 (57%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M++L+IEDD I + L+ + V+ G + L + +D +ILDL LPGMDG Sbjct: 1 MKVLVIEDDRTIAGLVAESLAHQQYIVEIAYDAETGLDYLEATAFDLLILDLGLPGMDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + R++G P+LILTARD +++V GL GADDY+ KPF L E+ AR+ AL+RR Sbjct: 61 SFCQTIRQRGHSLPILILTARDTSSDKVMGLDAGADDYMVKPFDLPELLARVRALLRRKP 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + L G ++LDP + T + L L PKE+A+LE+L+R+ R+LSR I + + Sbjct: 121 LPFAPILHWGALILDPDRAKVTYNHQELHLTPKEYAILEVLLRHGSRILSRSAIMDYAWP 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLG-----SDFIRTVHGIGYTLGEK 219 DE V+VH+ LR KL ++ I TV+G GY L Sbjct: 181 LDEMPGEETVKVHLRSLRHKLKAVGAPANLIETVYGFGYRLNPN 224 >UniRef50_B8HQE6 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8HQE6_CYAP4 Length = 228 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 82/220 (37%), Positives = 127/220 (57%), Gaps = 4/220 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RIL++ED+ I ++ GL GF T + + +D +ILDL LPG DG Sbjct: 3 RILIVEDEPRIAAFVEKGLRSHGFVTSVATDANEALDLALGGAFDLLILDLGLPGQDGLQ 62 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 +L + R +G+ P++ILTARD + +++ GADDYL KPF E+ R++A +R G Sbjct: 63 VLGQLRGQGESLPIIILTARDDIRDKIASFEGGADDYLTKPFRFEELLLRVKARLRTNYG 122 Query: 122 ----QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEK 177 Q + L+ NV+LD R + L L +EF L E R+ G+VLSR+ + ++ Sbjct: 123 VPKRQEESVLKCDNVLLDLRTRKVKVGDRWLELSAREFTLAETFFRHPGQVLSREQLLDR 182 Query: 178 LYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLG 217 ++ +D + SN V+V+V +LR+KLG++ I TV G+GY L Sbjct: 183 VWGYDYDPGSNIVDVYVGYLRKKLGNELIETVRGMGYRLK 222 >UniRef50_B6J7N7 Transcriptional regulatory protein n=8 Tax=Gammaproteobacteria RepID=B6J7N7_COXB1 Length = 232 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 98/221 (44%), Positives = 148/221 (66%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYS--APYDAVILDLTLPGMD 58 MR+LL+EDD +GDGI+ GL + G ++DW G+ + L S +D +ILDL LP Sbjct: 10 MRVLLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRS 69 Query: 59 GRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR 118 G D+L+ REK PV+ILTARD + +R++GL G+DDY+ KPF L E+ AR+ A+ RR Sbjct: 70 GLDVLKTIREKNDPTPVVILTARDTVDDRIKGLDAGSDDYMTKPFDLEELCARMRAMQRR 129 Query: 119 TNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 + +A + HG++ LDP + T + + + +EFALL+ L+ NAGRV+SR+ + + L Sbjct: 130 SKERAKPIISHGDITLDPASHVVTFKKKEVMVSRREFALLQKLLENAGRVISREQLNQTL 189 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK 219 Y W E + SNA+EVH+H+LR++ G+ IRT+ G+GY + +K Sbjct: 190 YGWGENIDSNALEVHIHNLRKRFGAKLIRTIRGVGYMVEKK 230 >UniRef50_C0QL69 Transcriptional regulatory protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QL69_DESAH Length = 232 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 81/226 (35%), Positives = 134/226 (59%), Gaps = 9/226 (3%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M IL+++DD + D ++ L + + ++ G + + ++ YD ++LD+ LP MDG Sbjct: 6 MNILIVDDDSELLDHLRRALERKHYRIETAENGEKALDKIFEITYDLILLDIMLPLMDGL 65 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L+ R+ G PVL+LTAR + +RV+GL GADDYL KPF++ E+ AR+ AL+RR + Sbjct: 66 SVLKHMRQAGLNTPVLMLTARGDVEDRVKGLDYGADDYLAKPFSMAELMARIRALLRR-D 124 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G+ L G + L+ R TL P++L KEF++LE L+ N G +SR + E ++ Sbjct: 125 GKRDTILTAGPLSLNTISRTVTLDNGPISLTSKEFSILEFLLHNRGSAVSRFNMAEHVWG 184 Query: 181 WDEEVT--SNAVEVHVHHLRRKLG------SDFIRTVHGIGYTLGE 218 + + SN V+VH+ +LR+K+ IRT+ GIG+ + + Sbjct: 185 NEFDPFSMSNFVDVHIKNLRKKISPPGDKYPPIIRTIRGIGFIIDD 230 >UniRef50_C7PAJ7 Two component transcriptional regulator, winged helix family n=3 Tax=Sphingobacteriales RepID=C7PAJ7_CHIPD Length = 266 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 131/226 (57%), Gaps = 8/226 (3%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RIL++ED++ + + +K GL + GF VD GR GK S YD VILDL LP +G + Sbjct: 41 RILVVEDEIKVANTVKKGLEENGFEVDVAYDGRMGKSLAASNNYDLVILDLNLPHANGYE 100 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + R K P+++LTA + ++++ LGADDYL KPF E+ AR+ ++R Sbjct: 101 VCEVIRRKNNAIPIIMLTALGGMDDKMQAFELGADDYLVKPFDFRELMARIRVFLKRAGS 160 Query: 122 QASN----ELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEK 177 + ++ G++ +D K+ T G+ + L KE+ LLE L + G+V+S+ +I EK Sbjct: 161 EVQENNQYKIVIGDLEIDREKKEVTRGGKKIALTAKEYQLLEFLALHKGKVISKLVIAEK 220 Query: 178 LYTWDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTLGEK 219 ++ D + +N +EV+++ LR+K+ DF + T G+GY L E+ Sbjct: 221 VWDIDFDTGTNVIEVYMNFLRKKIDKDFDNKLLHTKTGMGYYLAEE 266 >UniRef50_C6CZ95 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ95_PAESJ Length = 238 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 119/224 (53%), Gaps = 9/224 (4%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +IL+++D+ I I+ L G+ V + G E L D ++LDL LP MDG Sbjct: 4 KILVVDDEPSISMLIEFNLKLAGYDVRCVSDGEAVFEMLKPFRPDLIVLDLMLPKMDGIQ 63 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR--- 118 + RE R++ P+++LTA + +++ GL GADDY+ KPF+ E+ +R++A+ RR Sbjct: 64 VCRELRKQSNAVPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIFRRIQT 123 Query: 119 -TNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEK 177 S G + + +R + G + L PKEF LL L ++ G+VLSR+ + Sbjct: 124 LPGQAESTTFDIGRLTVRAEQREVLIDGRTIELTPKEFELLLFLCKHRGKVLSRQQLLHG 183 Query: 178 LYTWDEEVTSNAVEVHVHHLRRKLG-----SDFIRTVHGIGYTL 216 ++ + + V+VH+ HLR K+ ++I TV +GY L Sbjct: 184 VWDYHFLGDTRIVDVHISHLRDKIEQNARTPEYIMTVRNVGYKL 227 >UniRef50_A5UWJ8 Two component transcriptional regulator, winged helix family n=1 Tax=Roseiflexus sp. RS-1 RepID=A5UWJ8_ROSS1 Length = 231 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 93/222 (41%), Positives = 128/222 (57%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LLIED+ + + GL + G++VDW G QG E YD +ILDL LP +DG Sbjct: 1 MRLLLIEDEDDLAHALVRGLRQQGYAVDWAADGEQGCELASINEYDLIILDLNLPALDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 D+ R R +LILTARD ERV GL GADDYL KPF E+ AR+ AL+RR Sbjct: 61 DVCRYLRANYPHLLILILTARDQPEERVIGLDTGADDYLIKPFHFGELLARIRALLRRDL 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 L++ ++ LDP + L + L L KEFA+L LMR+ G V++++++ E ++ Sbjct: 121 RVRQPLLQYRDLKLDPATQTVWLNNQRLNLTRKEFAILSYLMRHQGEVITQEMLLEHVWD 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLG 217 +N V VH++ LRRKL +I TV G+GY LG Sbjct: 181 GTVNPFTNTVRVHINALRRKLRDTIAPYRYIETVVGVGYRLG 222 >UniRef50_A1HRL8 Two component transcriptional regulator, winged helix family n=2 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRL8_9FIRM Length = 231 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 83/226 (36%), Positives = 128/226 (56%), Gaps = 11/226 (4%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M++L+++DD I + L K G+SV G + + D V+LD+ LP +DG Sbjct: 1 MKVLVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKARQLGPDIVLLDVMLPSLDGW 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + +E R P+++LTARD A+R+ GL LGADDY+ KPF+ EV AR+ A+ RR Sbjct: 61 GVCKEIRRTS-DVPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIFRRLQ 119 Query: 121 GQA-----SNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIE 175 + L+ G+ +LD R T+AG P+ L P E+ LLEL + + G+V SR + Sbjct: 120 PASRRDGGERILKVGDAVLDQNSRSLTIAGTPVELTPTEYKLLELFLAHPGQVFSRLQLI 179 Query: 176 EKLYTWDEEVTSNAVEVHVHHLRRKLG-----SDFIRTVHGIGYTL 216 EK+ + E V+ H+ +LR+KLG +I+T++G+GY L Sbjct: 180 EKVQDYAFEGYERTVDSHIKNLRKKLGASPDEPHYIKTIYGVGYKL 225 >UniRef50_B3QW38 Two component transcriptional regulator, winged helix family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW38_CHLT3 Length = 239 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 115/230 (50%), Gaps = 12/230 (5%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 ++L+IEDD I + +K LS +G D G G E S YD +ILD+ LP +DG + Sbjct: 5 KVLIIEDDFDIANLVKINLSDIGCDCDIAGDGLSGIEYALSNNYDVIILDMMLPKLDGLE 64 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + + R+ P+L+LT+R ++V L GADDY+ KPF++ E+ AR+ A +RR Sbjct: 65 VCQRLRKNHILVPILMLTSRSEEDDKVTSLNAGADDYITKPFSIRELTARVIAHIRRYRP 124 Query: 122 QASN-------ELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLI 174 + + LD TLA + + + KEF LL L M+N GR SR + Sbjct: 125 EKEPSFINSKKTFLFDGLCLDTENHKVTLASKEIEITAKEFDLLSLFMKNPGRTYSRTEL 184 Query: 175 EEKLYTWDEEVTSNAVEVHVHHLRRKLG-----SDFIRTVHGIGYTLGEK 219 + ++ + V H++ LR K+ +I TV G+GY + Sbjct: 185 LDLVWGASYSGYEHTVNSHINRLRMKIEENPAKPKYILTVWGVGYKFNNQ 234 >UniRef50_C0GHG5 Two component transcriptional regulator, winged helix family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHG5_9FIRM Length = 237 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 132/225 (58%), Gaps = 9/225 (4%) Query: 4 LLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDIL 63 L++EDD I + ++ L F+VD G++G E + PY+ +ILDL LP +DG +I Sbjct: 9 LVVEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPYNLIILDLMLPTLDGWEIC 68 Query: 64 REWR--EKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN- 120 R R + P+++LTA++ +++V GL++GADDYL KPF E AR+ AL+RRT Sbjct: 69 RRLRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVHALLRRTTD 128 Query: 121 -GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 Q + L + + P A + + + L PKEF LL +L RNAGR L R+ + E+++ Sbjct: 129 YNQPDDTLYFCTLTIYPQSYQAFIEQKTVDLTPKEFELLLILARNAGRTLKREQLLEQVW 188 Query: 180 TWDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGEK 219 ++ ++ ++ H+ LR+K+ G F++TV G+GY L K Sbjct: 189 GYEYPGSTRTIDEHIKRLRQKISQLEPGYTFVQTVWGVGYKLEVK 233 >UniRef50_C0ZDC3 Two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZDC3_BREBN Length = 231 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 78/220 (35%), Positives = 126/220 (57%), Gaps = 5/220 (2%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 +LL+ED+ + ++ L GFS D G G E + YD ++LD+ LP + G ++ Sbjct: 13 LLLVEDEHNLARYLQLELENEGFSTDIEYDGLSGLEKALTIEYDLILLDVMLPELSGIEL 72 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQ 122 R RE P++++TAR + + V GL GA+DYL KPFA+ E+ AR+ L+R+ + Sbjct: 73 CRRIRETK-DVPIIMITARGEVPDIVTGLDSGANDYLAKPFAIEELFARIRVLLRQRESK 131 Query: 123 ASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTWD 182 A+ E+ G + + P R L E + L P+EF LL +++N + +SR+ I ++ +D Sbjct: 132 ANQEIVVGRLRIQPNARRVFLDEEEIMLTPREFDLLYYMVQNKEQAVSREQILTAVWGFD 191 Query: 183 EEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYTLGE 218 +N V+V++ +LR K+ SD I TV GIGYTL + Sbjct: 192 FMGNTNIVDVYIRYLRNKIESDPSVKLIHTVRGIGYTLRD 231 >UniRef50_B8G869 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G869_CHLAD Length = 245 Score = 308 bits (792), Expect = 6e-83, Method: Composition-based stats. Identities = 86/220 (39%), Positives = 130/220 (59%), Gaps = 4/220 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +++IED++ I + ++ GL+ G V ++GR + + D VILDL LP +DG Sbjct: 18 HVVVIEDELTIAESLRVGLTYEGMRVTVASEGRSALQIVEEQGADLVILDLMLPDIDGMV 77 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + R R ++ P++ILTAR + ERV+GL+LGADDY+ KPF+ E+ AR+ A+ RR Sbjct: 78 VCRRLRAWSEKLPIIILTARGEVQERVKGLQLGADDYIVKPFSFDELLARVNAIFRRAGI 137 Query: 122 QAS-NELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 L+ + L+ R TL G + L P EFALLE MR+ RV +R+ + +++ Sbjct: 138 SRPVTVLQVAGLSLNLETREVTLHGRAIELTPTEFALLEQFMRHPRRVFTRQTLLSRVWG 197 Query: 181 WDEEVTSNAVEVHVHHLRRKLGS---DFIRTVHGIGYTLG 217 + SN VEVH+ +LR K+G IRTV+G+GYTL Sbjct: 198 FTYVGDSNIVEVHISNLREKIGDHERKLIRTVYGVGYTLR 237 >UniRef50_B2A0K7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B2A0K7_NATTJ Length = 246 Score = 308 bits (792), Expect = 6e-83, Method: Composition-based stats. Identities = 85/242 (35%), Positives = 135/242 (55%), Gaps = 25/242 (10%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RILL+ED+ I + L K G+ V+ T G + + YD +ILDL LPG+DG + Sbjct: 3 RILLVEDEHHIAKLVNHNLIKEGYEVEHVTHGDEAFNKYFENDYDLIILDLMLPGLDGLE 62 Query: 62 ILREWR-EKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMR-RT 119 + R+ R PV++LTA+ E++ GL +GADDY+ KPF+ E+ AR++A +R RT Sbjct: 63 VCRKIRGNSSLHIPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQLRGRT 122 Query: 120 NG------------------QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELL 161 ++ + ++G + + P K A + + L L PKEF LL ++ Sbjct: 123 KELTDEKSQDNSNKIFDQRDKSEDVKKNGPLSIKPEKYRAYIENQELQLTPKEFELLNIM 182 Query: 162 MRNAGRVLSRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLG-----SDFIRTVHGIGYTL 216 + N+G+VL+R+ + EK++ +D + V+VH+ HLR+K+ D + TV GIGY L Sbjct: 183 VTNSGQVLTREKLLEKIWGYDFLGDTRTVDVHIRHLRQKISEAGGPPDLVETVRGIGYRL 242 Query: 217 GE 218 E Sbjct: 243 KE 244 >UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate regulon response regulator OmpR n=3 Tax=Clostridiales RepID=C4Z0U9_EUBE2 Length = 238 Score = 308 bits (792), Expect = 6e-83, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 127/226 (56%), Gaps = 11/226 (4%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 R+L+++D+ +I G+K L + VD G + E + + YD ++LD+ LP +DG Sbjct: 13 RVLVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIMLPKLDGLS 72 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN- 120 + ++ RE P+++LTA+ +++ GL GADDY+ KPF ++EV AR++A++RR + Sbjct: 73 VCQQIRE-FSNVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRRNSS 131 Query: 121 ----GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEE 176 Q SN ++ G++ +D R +A + + L KEF LLE+L N G+V SR + + Sbjct: 132 ITQKEQKSNVIKAGDMKIDCDSRSLYIADKEINLTAKEFDLLEILAVNPGKVYSRDNLLK 191 Query: 177 KLYTWDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLG 217 ++ D + V+VH+ LR K+ ++ T G+GY Sbjct: 192 AVWGQDYTGDARTVDVHMRRLREKIENNPSEPKYVHTKWGVGYYFN 237 >UniRef50_B4B6S6 Multi-component transcriptional regulator, winged helix family n=1 Tax=Cyanothece sp. PCC 7822 RepID=B4B6S6_9CHRO Length = 638 Score = 308 bits (792), Expect = 7e-83, Method: Composition-based stats. Identities = 83/222 (37%), Positives = 130/222 (58%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD L + LS ++VD G+ G + + YD +LD+ +P +DG Sbjct: 1 MRILLMEDDPLTRTVLTQTLSNHHYNVDVAKDGKSGLQLAQTYNYDLFLLDVVVPVLDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + ++ R +G +EP+++LTA+D+ ++++ GL GADDY+ KP L + AR+ AL+RR N Sbjct: 61 SVCQQLRSQGLQEPIVLLTAKDSSSDQIIGLDAGADDYIIKPVNLETLMARIRALLRRKN 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 S+ + GN+ L+ EP+ L KE+ALLEL + N R+ +R++I E+L+ Sbjct: 121 ASLSSVIEWGNLQLNLSNCEVNCENEPIHLTAKEYALLELFLVNPKRIFNRRVILERLWD 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYTLGE 218 E V H+ LR+KL SD I TV+G+GY L + Sbjct: 181 IGESPGEETVSTHIKCLRQKLKNAGVSDPIETVYGLGYRLRK 222 Score = 66.6 bits (163), Expect = 5e-10, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 2/78 (2%) Query: 26 SVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWRE--KGQREPVLILTARDA 83 V Q E L + + ++LDL +P +G ++ + R+ P+L L+ Sbjct: 543 EVITCHNPNQFWEMLTTYHPNLLVLDLEMPQFNGLELCQVVRQDPTWNDLPILFLSIYTD 602 Query: 84 LAERVEGLRLGADDYLCK 101 + GADDY+ K Sbjct: 603 EEMIQQMFAAGADDYISK 620 Score = 63.6 bits (155), Expect = 4e-09, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 2/102 (1%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTL--PGMDGR 60 IL+I+DD+ + + ++ +++ T ++ + +ILDL DG Sbjct: 394 ILMIDDDLALAERVRIEAQTWNLNLEIATDLTVARQIILQKTPAIIILDLNFDSASEDGF 453 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKP 102 +L E + P++I T R++L +R++ RLGA +L KP Sbjct: 454 TLLEELNQSRPNLPIIIFTGRESLNDRIKVARLGAKAFLHKP 495 >UniRef50_B4VMC7 Response regulator receiver domain protein n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VMC7_9CYAN Length = 362 Score = 308 bits (792), Expect = 7e-83, Method: Composition-based stats. Identities = 83/222 (37%), Positives = 125/222 (56%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL++ED+ + I GL++ + VD G G + + YD ++LD+ LP +D Sbjct: 1 MKILVVEDNPTLAQTIVAGLTQQNYVVDLAQDGETGLDNALAYNYDLILLDINLPHLDSI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + R R+ G P+++L+A + V GL GADDY+ KP + +AAR+ AL+RR Sbjct: 61 SLCRRLRQAGNTSPIVLLSASATTQDMVAGLDAGADDYIIKPCPVEGLAARVRALLRRNR 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 ++ L+ GN+ +DP T G+PL L PKE+ LL LLM + R+ S+ I EKL+T Sbjct: 121 DASTPTLQWGNLEIDPSTCEVTCLGQPLRLSPKEYGLLYLLMSSPTRIFSQDYIIEKLWT 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTLGE 218 + + V+ HV LRRKL D I TV+G GY L + Sbjct: 181 FGDPPNRETVKAHVKGLRRKLKKAGVGDIIETVYGFGYRLKD 222 >UniRef50_C6VX71 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteroidetes RepID=C6VX71_DYAFD Length = 232 Score = 308 bits (791), Expect = 9e-83, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 122/226 (53%), Gaps = 8/226 (3%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M++LLIED+ + I+ L+ G + G+ G + + +D +ILDL +P ++G Sbjct: 1 MKLLLIEDEPNVISLIQRSLTANGHEITIAMDGQSGLQMVLQHQFDVIILDLMIPIINGM 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++ R R P+L+LTA V GL GADDY+ KPF L E+ ARL L+RR Sbjct: 61 EVCRRARNAQVTTPILMLTALGTTENIVSGLDSGADDYMTKPFKLAELEARLRTLIRRGK 120 Query: 121 GQASN----ELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEE 176 L G+++LD + G+P+ L EF LLE L+ N RVL+R I E Sbjct: 121 EPEKEKNDKVLTLGDLVLDKVTKTVKRGGQPIELTATEFRLLEYLLSNTNRVLNRMEILE 180 Query: 177 KLYTWDEEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYTLGE 218 ++ + + +N V+V++++LR+K+ + I TV G+GY + + Sbjct: 181 NVWDINFNLGTNVVDVYINYLRKKIDKNHDIKLIHTVFGMGYVIRQ 226 >UniRef50_A0LPJ2 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=A0LPJ2_SYNFM Length = 263 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 94/223 (42%), Positives = 134/223 (60%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L++EDD I D ++ L++ GF +D G QG E YDA+I+D+ LP MDG Sbjct: 32 MRVLVVEDDRQITDFLERALTEAGFKIDVAWNGPQGFELALKESYDAIIIDVILPVMDGL 91 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +IL++ R +G PVLIL+A+ ++++RV GL LG DDYL KPF L E+ AR+ +L+RR+ Sbjct: 92 EILQKLRNRGILTPVLILSAKGSVSDRVSGLELGGDDYLTKPFELAELLARVWSLIRRSK 151 Query: 121 GQASNE-LRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 L+ G++ LD R E L P+EFALLE LMRN GRV++R I E ++ Sbjct: 152 VNQETVQLKAGDLWLDLVSRRVFRGDEEFRLLPQEFALLEYLMRNKGRVVTRAEILENVW 211 Query: 180 TWDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYTLGE 218 ++ +N VEVH+ LR KL ++T GY L E Sbjct: 212 GYNFVPATNVVEVHICRLREKLERPNKPRLLQTFRKAGYALVE 254 >UniRef50_Q2RPG3 Two component transcriptional regulator, winged helix family n=8 Tax=Alphaproteobacteria RepID=Q2RPG3_RHORT Length = 229 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 92/219 (42%), Positives = 128/219 (58%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LL+ED+ + ++ L + GF+VD G + + P+DAV+LDL LP +DG Sbjct: 1 MRVLLVEDEPTLALTLRRVLERAGFAVDLADDGEEALFLGETEPFDAVVLDLGLPRLDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +LR WR G PVLILTAR E+V G GADDY+ KPF + EV RL+AL+RR Sbjct: 61 GVLRRWRAAGIGVPVLILTARGGWPEKVAGFEAGADDYVTKPFEMEEVVLRLKALIRRAA 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G S EL G + LD ++ G PL L +E+ +L L+ G+ +SR I + +Y Sbjct: 121 GHPSTELVAGPLRLDTTSGRGSVEGRPLDLTAQEYKILTYLLLRQGQTVSRSDIVDHVYD 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK 219 D + SN ++V V LRRKLG+ I TV G+GY L + Sbjct: 181 RDSDRDSNVIDVLVGRLRRKLGAPLIHTVRGLGYRLEAE 219 >UniRef50_A8LHM5 Two component transcriptional regulator, winged helix family n=11 Tax=Actinobacteria (class) RepID=A8LHM5_FRASN Length = 270 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 81/225 (36%), Positives = 118/225 (52%), Gaps = 9/225 (4%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 R+L+++D+ I D ++ L GF V G++ + D +ILD+ LP DG + Sbjct: 22 RVLVVDDEPNIVDLVRMALRFHGFDVVTAATGQEALTRAAADQPDLLILDVMLPDADGFE 81 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + R R G V+ LTARDA +++ GL G DDY+ KPFA+ E+ AR+ A++RRT Sbjct: 82 VCRRLRADGAEVAVVYLTARDAHRDKITGLTYGGDDYITKPFAVEELIARVRAVLRRTRR 141 Query: 122 QASN------ELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIE 175 A L + +V LDP + A +P+ L P EF+LL + N RVLSR I Sbjct: 142 PAPEPSPAPGLLTYADVELDPDAHLVRRADQPVELSPTEFSLLRYFLHNPNRVLSRAQIL 201 Query: 176 EKLYTWDEEVTSNAVEVHVHHLRRKL---GSDFIRTVHGIGYTLG 217 ++ D + V+ +V +LRRKL G I T G GY L Sbjct: 202 AAVWDRDFDGEPTVVDQYVSYLRRKLGQHGPPLIHTQRGFGYALR 246 >UniRef50_D1VF89 Two component transcriptional regulator, winged helix family n=1 Tax=Frankia sp. EuI1c RepID=D1VF89_9ACTO Length = 306 Score = 307 bits (789), Expect = 1e-82, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 114/224 (50%), Gaps = 8/224 (3%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 R+L+++D+ I D + L GF V+ G+ + P D ++LD+ L +DG Sbjct: 80 RVLVVDDEEAITDLVAMALRYEGFEVETVRSGQAALTRVALDPPDLLVLDVMLGDIDGFA 139 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + R G P L LTARD ++V GL LG DDY+ KPF++ E+ AR+ A++RR Sbjct: 140 VCERLRGAGHGVPTLFLTARDTTQDKVRGLTLGGDDYVTKPFSVSELVARVRAILRRAGS 199 Query: 122 QA-----SNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEE 176 LR ++ LDP R AG + L E+ LL+ L+ NA VL+R + + Sbjct: 200 PVTGDGHPAPLRFADLELDPRTREVRRAGRLVELTATEYRLLQFLLANARAVLTRAQLLD 259 Query: 177 KLYTWDEEVTSNAVEVHVHHLRRKLG---SDFIRTVHGIGYTLG 217 ++ D +E ++ +LRRK+ I TV G+GY L Sbjct: 260 HVWGHDFSGEGGVLETYISYLRRKVDNVEPPLIHTVRGVGYVLR 303 >UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actinobacteridae RepID=D2Q9F0_9BIFI Length = 248 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 78/231 (33%), Positives = 125/231 (54%), Gaps = 16/231 (6%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 I++++D+ I + + L GF V+ G + E + D ++LD+ LP +DG + Sbjct: 14 IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKTQPDLIVLDVMLPDIDGFTV 73 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQ 122 R R++G PVL LTARD ++V GL +G DDY+ KPF+L EV AR+ A++RRT Q Sbjct: 74 TRRIRQEGIATPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQEQ 133 Query: 123 --ASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 +R G++ ++ + AG+P+ L P E+ LL LM N GRVLS+ I + ++ Sbjct: 134 VEDDPIIRVGDLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 193 Query: 181 WDEEVTSNAVEVHVHHLRRKLG--------------SDFIRTVHGIGYTLG 217 +D + VE ++ +LR+K+ + I T GIGY + Sbjct: 194 YDWGGDAAIVESYISYLRKKVDGIVVEDADGEEHKVTPLIETKRGIGYMIR 244 >UniRef50_B4WSX3 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WSX3_9SYNE Length = 640 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 82/222 (36%), Positives = 127/222 (57%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL++DD + D + L K + VD T G +E + YD +ILD+ LP ++G Sbjct: 27 MRILLVDDDAALMDILAEQLIKQRYVVDIATDGESAEECVNLFSYDFIILDMGLPDIEGI 86 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + + R++ P+L+LTA D +V+ L GADDY+ KPF E+ AR+ AL RR N Sbjct: 87 SLCQRLRQQKITSPILMLTAEDNSKAKVKALNAGADDYVVKPFDFEELFARIRALRRRDN 146 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + L+ G++ +DP PL + PKE+ +LEL +R+ +V S I + L++ Sbjct: 147 NTLAAVLQQGDLRVDPNTFEVFYQDRPLRVTPKEYTMLELFLRHPNQVFSIDAIIDNLWS 206 Query: 181 WDEEVTSNAVEVHVHHLRRKLG-----SDFIRTVHGIGYTLG 217 +++ + +AV HV LR+KL DFI+TV+G+GY L Sbjct: 207 FEDPPSEDAVRTHVKGLRQKLKAGGAPKDFIQTVYGLGYRLK 248 Score = 82.4 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 2/128 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +++ I+DD + ++T LS GF + + L S D +++D+ +P +G + Sbjct: 513 KVVAIDDDPQVLALLQTILSPWGFQTTALENADRLFDTLESVRPDLLLIDVEMPETNGLE 572 Query: 62 ILREWR--EKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 I R R E+ Q+ P+L L+ D + + +GADD++ K E+ RL ++RT Sbjct: 573 ICRVLRADERWQQLPILFLSVHDEDHTQHQAFNVGADDFISKTTMATELPTRLINRLKRT 632 Query: 120 NGQASNEL 127 L Sbjct: 633 GRAVPALL 640 >UniRef50_C7MME5 Response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein n=2 Tax=Coriobacteriaceae RepID=C7MME5_CRYCD Length = 226 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 117/223 (52%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL++EDD + + + L + VD G G S YD +LD+ LP DG Sbjct: 1 MQILVVEDDPRLAEALAAILKANDYQVDVVGDGDAGLAYAQSGLYDCAVLDVMLPRRDGF 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + + R +G P+L+LTAR + ++VEGL GADDY+ KPFA +E+ AR+ +L RRT Sbjct: 61 SVAAQLRREGNALPILMLTARGEIRDKVEGLDAGADDYMTKPFAPVELLARIRSLTRRTG 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 L ++ LD G+ + L KEF ++ +LM RV S+ + K++ Sbjct: 121 SVEFETLSFNDITLDLDACELECKGKRIRLSQKEFDIMHVLMAQPSRVASKDSLISKVWG 180 Query: 181 WDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTLGEK 219 +D N VE +V LR+KL + I T+ G GY LG + Sbjct: 181 YDSTAADNNVEAYVSFLRKKLAFIGATTCIVTLRGQGYRLGTQ 223 >UniRef50_Q20YF2 Two component transcriptional regulator, winged helix family n=24 Tax=Proteobacteria RepID=Q20YF2_RHOPB Length = 221 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 99/218 (45%), Positives = 134/218 (61%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILLIEDD + I L + G++VD G G S YDA ILDL LPG+DG Sbjct: 1 MRILLIEDDTRLARQIAEALERAGYTVDRSADGEDGWFMGDSGVYDAAILDLGLPGLDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +LR WR+ + PVLILTAR + E+V GLR GADDYL KPF + E+ AR+EAL+RR + Sbjct: 61 SVLRRWRDAKRAMPVLILTARASWREKVTGLREGADDYLTKPFEIEELLARIEALIRRAS 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G A+ E+ + LDP + + G PL L E+ L LM + +V+S+ + E +Y Sbjct: 121 GHATAEISVAGLRLDPSTQRISRDGAPLDLTALEYRALAYLMMHPAKVVSKTELTEHIYG 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE 218 D++ SN +EV V+ LR+K+G+D IRT G GY L + Sbjct: 181 QDDDRDSNVIEVLVNRLRKKIGADAIRTRRGQGYQLAD 218 >UniRef50_A9VV65 Two component transcriptional regulator, winged helix family n=24 Tax=Bacillus RepID=A9VV65_BACWK Length = 236 Score = 307 bits (787), Expect = 2e-82, Method: Composition-based stats. Identities = 71/230 (30%), Positives = 117/230 (50%), Gaps = 13/230 (5%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +IL++ED+ I + K L + + V G +G + + D +ILDL +P DG + Sbjct: 3 KILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQPDLIILDLMMPKKDGWE 62 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + E R++ P+++LTA+ +R+ GL +GADDYL KPF+ E+ R++ ++RR N Sbjct: 63 LCGEIRQQSN-VPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGNQ 121 Query: 122 QA-------SNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLI 174 A S + ++ + P R + + L KEF +L ++ ++ +V SR + Sbjct: 122 VAIQAKESLSEVIEFPDLKIYPKTRCVLVCENEVELTVKEFEVLYVMAKHPKQVFSRSQL 181 Query: 175 EEKLYTWDEEVTSNAVEVHVHHLRRKLGS-----DFIRTVHGIGYTLGEK 219 E ++ + E SN V V V LR KL +I TV GIGY Sbjct: 182 LELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNHWIHTVWGIGYRFEPN 231 >UniRef50_B8H4H9 Two-component response regulator protein n=9 Tax=Proteobacteria RepID=B8H4H9_CAUCN Length = 242 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 94/232 (40%), Positives = 129/232 (55%), Gaps = 15/232 (6%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYS-----APYD---AVILDL 52 M IL++EDD + D ++ GL G+ V G G EA D ++LDL Sbjct: 1 MHILVVEDDTRVADFLERGLKAEGYKVRVARDGVSGLEAARDLDAMLRELDQRGVILLDL 60 Query: 53 TLPGMDGRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARL 112 LP M G ++ + R G PVL+LTA A+ +RV GLR GADDYL KPF+ E+ AR+ Sbjct: 61 MLPKMTGMEVCQTLRASGVLTPVLMLTALGAVDDRVTGLRTGADDYLVKPFSFEELLARI 120 Query: 113 EALMRRTNGQASN---ELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVL 169 EAL+RR+ Q + L+ GNV LD + GE + L +E ALLEL + + GRVL Sbjct: 121 EALLRRSRDQRAPANRTLKAGNVELDRTTMRVSRDGEEVVLTARELALLELFLSSPGRVL 180 Query: 170 SRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYTLG 217 SR+ I ++ DE+ +N V+V+V LR K+ FI TV G+GY L Sbjct: 181 SRERILSNVWGVDEDPLTNVVDVYVRRLRAKIDPPLASSFITTVRGLGYRLE 232 >UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KL69_9FIRM Length = 230 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 127/226 (56%), Gaps = 10/226 (4%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RI ++ED+ I ++ L GF + G + E + +D V+LD+ LPGMDG Sbjct: 6 RIFIVEDERRIARFLQIELEHEGFETEIEENGTRAYERIMQGNFDLVLLDVMLPGMDGMT 65 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT-- 119 I + RE P+++LTA+D + ++V GL +GADDY+ KPFA+ E+ AR+ +R+ Sbjct: 66 ICKRVREVS-SLPIIMLTAKDEVEDKVAGLDIGADDYMTKPFAIEELMARIRNALRKHVP 124 Query: 120 ---NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEE 176 L+ N+++ P + + GE + L KE++LLE +MRN VL+R I E Sbjct: 125 DNGGVPLEERLQVKNLVMYPKRYEVEVDGETVHLTKKEYSLLEYMMRNKRTVLTRDQILE 184 Query: 177 KLYTWDEEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTLGE 218 K++ +D +N V+V++ +LR KL +I TV G+GY + E Sbjct: 185 KVWGYDYSGDTNVVDVYIRYLRAKLDDRFHEKYIYTVRGVGYAVKE 230 >UniRef50_Q44006 Transcriptional activator protein czcR n=330 Tax=cellular organisms RepID=CZCR_RALME Length = 225 Score = 306 bits (785), Expect = 4e-82, Method: Composition-based stats. Identities = 87/223 (39%), Positives = 125/223 (56%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L++ED+ + ++ GLS+ GF VD G G YD +ILD+ LPGMDG Sbjct: 1 MRVLVVEDEPRTAEYLQKGLSESGFVVDIANNGGDGLHMAEETDYDVIILDVMLPGMDGW 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +++ R K PVL LTA D +A+RV G LGADDYL KPFA E+ AR+ +R++ Sbjct: 61 TVIKSIRSKS-ETPVLFLTALDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLRQST 119 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + S LR ++ +D R + L +EF+LL LLMR G VLSR I +++ Sbjct: 120 SKESERLRIADLDIDVLGRRVFRGTTRIELTNQEFSLLHLLMRRRGEVLSRTTIASQVWG 179 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTLGEK 219 + + +N V+V + LR K+ F I TV G+GY L + Sbjct: 180 VNFDTDTNVVDVAIRRLRSKVDDPFDQKLIHTVRGMGYVLDPE 222 >UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacteria RepID=Q8DLA7_THEEB Length = 256 Score = 306 bits (785), Expect = 4e-82, Method: Composition-based stats. Identities = 86/233 (36%), Positives = 128/233 (54%), Gaps = 18/233 (7%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGK-----EALYSAPYD-----AVILDL 52 IL+IED+ LI + + L + G+ + G + L + +ILD+ Sbjct: 24 ILVIEDEDLIRETVVLALQEEGYHTLVASDGYEALNLIHTYLLRETSPEQGEVCLIILDV 83 Query: 53 TLPGMDGRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARL 112 LPG++G D+ R R +G P+L+++A+ + +RV GL +GADDYL KPF + E+ AR Sbjct: 84 MLPGINGLDLCRLIRRQGCTVPILMISAKGSEIDRVVGLEIGADDYLAKPFGMREMLARC 143 Query: 113 EALMRRTNGQA---SNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVL 169 AL+RRT Q LR ++ L P + ATL GE L L PKE+ LLEL MR+ RV Sbjct: 144 RALLRRTRIQQATLPPVLRFRDLCLYPQECRATLRGEELNLSPKEYKLLELFMRHPRRVW 203 Query: 170 SRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLG 217 R+ + ++++ D S V+VH+ LR K+ +D +I TV G GY G Sbjct: 204 PREQLLDQVWGPDFVGDSKTVDVHIRWLREKIETDPSHPQYILTVRGFGYRFG 256 >UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B5YEK3_DICT6 Length = 232 Score = 305 bits (784), Expect = 5e-82, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 124/224 (55%), Gaps = 8/224 (3%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +ILL+EDD I + + L+K G+ V+ G + D V+LD+ LP DG + Sbjct: 3 KILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDGWE 62 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + +E R+ P+++LTA+D ++V GL++GADDY+ KPF E+ AR+EA++RR Sbjct: 63 VCKEIRKISN-VPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRYQS 121 Query: 122 --QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 S ++ +D KR + G+ + L +EF +L+LL+ + GRV +R +I + ++ Sbjct: 122 DLSKSQKIVAPPFEMDLVKRTVKVKGKEVNLSYREFEILKLLLSSPGRVWTRDMIIKHIW 181 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218 + AV+V++ LR K+ D +I TV +GY E Sbjct: 182 GENFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKFQE 225 >UniRef50_C6J181 Two-component system response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J181_9BACL Length = 225 Score = 305 bits (784), Expect = 5e-82, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 126/223 (56%), Gaps = 7/223 (3%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +IL+I+DD I I+ GL+ G+ V G++G + D +ILD+ +P +DG + Sbjct: 4 KILIIDDDKTISTMIRRGLTYEGYEVTVANGGKEGLNLVLEDEPDLIILDIMMPDLDGLE 63 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR--T 119 + + R K P+L++T D++A+RV GL GADDYL KPFA E+ AR++AL+RR Sbjct: 64 VCKRLR-KDAGIPILMVTGMDSIADRVHGLETGADDYLVKPFAFEELVARVKALLRRLDH 122 Query: 120 NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 + +L ++++D R A + EF LL M++ +VL+R+L+ ++++ Sbjct: 123 KKKEDEKLIFSDLVVDLSTRQAFRGSRTIEFSTTEFNLLCFFMKHPQQVLTRELLMDRVW 182 Query: 180 TWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTLGE 218 +D SN +EV+V +LR KL I TV G GY L E Sbjct: 183 GFDFRGESNVLEVYVGYLRSKLEAQNEPRLIHTVRGAGYVLRE 225 >UniRef50_P35163 Transcriptional regulatory protein resD n=162 Tax=Bacteria RepID=RESD_BACSU Length = 240 Score = 305 bits (784), Expect = 5e-82, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 118/230 (51%), Gaps = 15/230 (6%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +IL+++D+ I ++ L + +++D G + A YD ++LDL +PG DG + Sbjct: 8 KILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIE 67 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + R+ REK P+++LTA+ A RV+G G DDY+ KPF+ EV R++AL+RR + Sbjct: 68 VCRQIREKK-ATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 126 Query: 122 --------QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKL 173 N L ++ +D T G ++L PKE+ LL L + +V R+ Sbjct: 127 TSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREK 186 Query: 174 IEEKLYTWDEEVTSNAVEVHVHHLRRKL------GSDFIRTVHGIGYTLG 217 + ++++ ++ V+ HV LR KL + I TV G+GY Sbjct: 187 LLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFE 236 >UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=36 Tax=Bacilli RepID=B4U3Y8_STREM Length = 247 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 122/230 (53%), Gaps = 13/230 (5%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 R+LL++D+ I + L+K GF + T GR PYD ++LD+ LP +DG + Sbjct: 11 RVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDGIE 70 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + + R KG + P+++++A+ ++V L LGADDY+ KPF+ E+ AR++A++RRT Sbjct: 71 VCKRLRSKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTEA 130 Query: 122 --------QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKL 173 + L P + E L L PKE+ LL LM++ L+R+ Sbjct: 131 EISGDGEEHREPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMTLTRER 190 Query: 174 IEEKLYTWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218 + E+++ +D + V+VH+ LR K+ + +I+T+ G GY E Sbjct: 191 LLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKFKE 240 >UniRef50_C7ND40 Two component transcriptional regulator, winged helix family n=4 Tax=Fusobacteriaceae RepID=C7ND40_LEPBD Length = 226 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 121/224 (54%), Gaps = 9/224 (4%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +IL+IEDD I ++ L GF V + G++G YD ++LD+ LP M G + Sbjct: 4 KILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVMLPKMSGME 63 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + + RE + P+++LTA+D ++++V G GADDY+ KPF+ E+ AR++AL+RRT Sbjct: 64 VCKRIRETS-QVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALLRRTKK 122 Query: 122 QA--SNELRHGNVMLDPGKRIATLA--GEPLTLKPKEFALLELLMRNAGRVLSRKLIEEK 177 ++ ++ + L +EF LL+ L+ N G VLSR I E+ Sbjct: 123 SVVHKGIFEFEDLTINYSTYEVFRDYGKNLIQLSKREFELLDFLVLNKGIVLSRDKILEE 182 Query: 178 LYTWDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTLG 217 ++ +D N +++++ +LR K+ + I+TV GIG+ Sbjct: 183 VWGFDYIGNDNILDLYIKYLRDKIDRPYERKFIQTVRGIGFIFK 226 >UniRef50_B1VIL1 Two-component system response regulator n=3 Tax=Corynebacterium RepID=B1VIL1_CORU7 Length = 256 Score = 305 bits (783), Expect = 7e-82, Method: Composition-based stats. Identities = 87/223 (39%), Positives = 126/223 (56%), Gaps = 6/223 (2%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 ++L+++D+ I D IK L GF V+ G+ E + DA ILD+ +PGMDG Sbjct: 31 KVLVVDDEDNISDLIKVSLKFQGFDVETADNGQTALEIAETYRPDAFILDVMMPGMDGFT 90 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 +L + RE G P L LTA+D + +R+ GL +GADDY+ KPF+L EV RL ++RR Sbjct: 91 LLNKLREAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVAK 150 Query: 122 ---QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 + S+ + + ++ LD T AGE + L P EF LL LM NA VLS+ I + + Sbjct: 151 DDSEESSLITYEDITLDDDMHEVTKAGEVVDLSPTEFQLLRYLMVNAEVVLSKSKILDHV 210 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLG---SDFIRTVHGIGYTLGE 218 + +D N VE +V +LRRK+ I TV G+GY L + Sbjct: 211 WNYDFGGDGNVVESYVSYLRRKIDTKEPRLIHTVRGVGYVLRK 253 >UniRef50_A5EYW4 Transcriptional regulator n=31 Tax=Bacteria RepID=A5EYW4_VIBC3 Length = 224 Score = 305 bits (783), Expect = 7e-82, Method: Composition-based stats. Identities = 84/223 (37%), Positives = 126/223 (56%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILLIEDD I I+ GL G + G+ G E + S+ D +ILD LP +DG Sbjct: 1 MRILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT- 119 + ++ R G + +L+L+A + ER++GLR GADDYL KPF E+ AR+EAL RR Sbjct: 61 TLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120 Query: 120 NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 SN+LR ++ L A +P+ L KE ++LEL +R G + SR+ I ++ Sbjct: 121 QTHTSNKLRFADLELCLSTMRVYRAEQPIELTAKEISILELFLRKPGHIFSRERILANVW 180 Query: 180 TWDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYTLGE 218 ++ +N V+V++ LR+K+ I+T G+GY LG+ Sbjct: 181 GIHQDPLTNVVDVYMRRLRKKIDMPFAQPLIQTKRGMGYYLGD 223 >UniRef50_A5FEG3 Two-component transcriptional regulator, winged helix family n=4 Tax=Bacteroidetes RepID=A5FEG3_FLAJ1 Length = 224 Score = 305 bits (783), Expect = 8e-82, Method: Composition-based stats. Identities = 71/223 (31%), Positives = 123/223 (55%), Gaps = 6/223 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M++L++ED+ + ++ G ++ V G+ E + + +D V+LD+ LP ++G Sbjct: 1 MKLLIVEDEPNLLSILRKGFAENNNEVSVALDGKTALEMIDNYNFDVVVLDVMLPDINGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +I R R P+L+LTA V GL GADDYL KPF E+ AR+ AL RR + Sbjct: 61 EICRRLRASKNFVPILLLTALGTSENIVTGLNSGADDYLVKPFKFGELDARVNALHRRAH 120 Query: 121 GQAS--NELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 + + + G++ ++ + GE + L KEF LL L +NAGR++SR I + + Sbjct: 121 QETDKIDVITIGDLEINGRAKTVKRDGESIILTAKEFKLLYYLGKNAGRIVSRDQILDNV 180 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTLG 217 + + ++ +N V+V++ +LR+K+ F I T+ G+GY + Sbjct: 181 WDINFDMNTNVVDVYITYLRKKVDKPFKTKLIHTMKGLGYVIK 223 >UniRef50_Q1AZ24 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZ24_RUBXD Length = 234 Score = 305 bits (782), Expect = 8e-82, Method: Composition-based stats. Identities = 86/231 (37%), Positives = 128/231 (55%), Gaps = 14/231 (6%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALY-SAPYDAVILDLTLPGMDGR 60 R+L++EDD + D ++ LS+ G + G E L S P+D V+LD+ LPGMDG Sbjct: 3 RVLIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVMLPGMDGI 62 Query: 61 DILREWREKG---QREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMR 117 + RE RE + PV++LTARD V GL +GADDY+ KPF+ ++A+R+ A +R Sbjct: 63 SVCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQLR 122 Query: 118 RTNGQASN-----ELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRK 172 R A +L + +D +R T GE + L +EF +L LL N GRV SR+ Sbjct: 123 RQRMNAQASPEQRKLEFPGLEIDLLRRRVTARGEQVELTAREFEVLALLASNPGRVYSRE 182 Query: 173 LIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218 I + L+ + + +VH+ HLR+K+ D +I+TV G+GY E Sbjct: 183 QIMDHLWGGEFFGEPRSADVHIQHLRQKIEPDPKNPRYIQTVRGMGYRFAE 233 >UniRef50_Q12PS6 Two component transcriptional regulator, winged helix family n=79 Tax=Proteobacteria RepID=Q12PS6_SHEDO Length = 243 Score = 305 bits (782), Expect = 8e-82, Method: Composition-based stats. Identities = 82/221 (37%), Positives = 125/221 (56%), Gaps = 4/221 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LL+EDD+ + +K L +S+D + G G PYDA I+D+ LP +DG Sbjct: 1 MRLLLVEDDIALQQNLKQHLQNANYSLDIASDGELGLYQGLEFPYDAAIIDIGLPKLDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +++ RE+ P+L+LTARD+ ++V GL GADDYL KPF E+ AR++AL+RR Sbjct: 61 SLIKTLRERQVSYPILVLTARDSWQDKVSGLDAGADDYLTKPFHPEELLARMKALIRRAA 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G+AS+ + +G ++ + L E+ L E LM + G V S+ ++ E +Y Sbjct: 121 GKASSLVSNGPFSVNLTSLEVKRHEVLVNLSSSEYKLFEFLMLHPGEVQSKSVLTEHIYD 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYTLG 217 D ++ SN +EV + LR+KL D I T+ G GY L Sbjct: 181 QDFDLDSNVIEVFIRRLRKKLDPDNQYQLIETLRGQGYRLN 221 >UniRef50_D2RAW2 Response regulator receiver domain protein n=3 Tax=Actinobacteridae RepID=D2RAW2_GARVA Length = 246 Score = 305 bits (782), Expect = 9e-82, Method: Composition-based stats. Identities = 73/232 (31%), Positives = 120/232 (51%), Gaps = 16/232 (6%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 I++++D+ I + + L GF V+ G + E + + +++D+ LP +DG + Sbjct: 9 IVVVDDEPSIRELLVASLHFAGFEVETAASGSEAVEVIERVNPNLIVMDVMLPDIDGFTV 68 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQ 122 R R+ G + PVL LTARD +++ GL +G DDY+ KPF+L EV AR+ A++RRT Sbjct: 69 TRRIRQNGIKVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQEP 128 Query: 123 ASNE--LRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 ++ ++ ++ T G P+ L P E+ LL LM N GRVLS+ I ++ Sbjct: 129 DEETHIIKVADLEINEDSHDVTRCGVPIELSPTEYKLLHYLMDNEGRVLSKSQILNHVWQ 188 Query: 181 WDEEVTSNAVEVHVHHLRRKLGS--------------DFIRTVHGIGYTLGE 218 +D + VE ++ +LR+K+ I T GIGY + E Sbjct: 189 YDWGGDAAIVESYISYLRKKIDGIEITDDSGKQQKVVPLIETKRGIGYMIRE 240 >UniRef50_A4CE30 Probable two-component response regulator transcription regulator protein n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4CE30_9GAMM Length = 227 Score = 305 bits (782), Expect = 9e-82, Method: Composition-based stats. Identities = 84/224 (37%), Positives = 129/224 (57%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD + ++ GL G+ + G++G E + ++LD+ LP ++G Sbjct: 1 MRILLVEDDDRVASFLERGLRAEGYFIVRACDGKEGLELAQEGDFQLILLDIMLPSLNGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++ + R K P+++LTA D + ++GLRLGADDY+ KPFA E+ AR+EA+ RRT Sbjct: 61 EVCQALRIKKNLVPIIMLTAMDESQDIIKGLRLGADDYVTKPFAYDELLARIEAVTRRTP 120 Query: 121 GQ--ASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 + +N L G + D I +L E ++L KE A+LELLM N G+ LSR+ I + Sbjct: 121 NEIKNTNILEFGPLCFDRSSYIVSLDNEEISLTVKEMAILELLMTNTGKYLSRERILSNV 180 Query: 179 YTWDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLG 217 + + + +N V+V++ LR+KL G I T GIGY L Sbjct: 181 WGMEMDPMTNVVDVYIGKLRKKLTIESKGESMIETKRGIGYRLN 224 >UniRef50_C5D3X1 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=C5D3X1_GEOSW Length = 232 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 124/225 (55%), Gaps = 6/225 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 +++L+IEDD I + I+ + K G+S + G +G E YS D +ILD+ LP ++G Sbjct: 5 IKVLIIEDDANIVELIQLYMDKAGYSYISASDGEEGLELFYSESPDCIILDIMLPKLNGW 64 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT- 119 ++ + R + + P+++LT + + ++GL +GADDY+ KPF E+ AR++ ++RRT Sbjct: 65 EVCKTIRMEDRHVPIIMLTGKGETYDVIKGLNIGADDYIVKPFDPNELIARVKTVLRRTI 124 Query: 120 -NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 + + L+ N+++ + + E + + PKE L L N +VL+R+ + +++ Sbjct: 125 LSESEKDRLQFDNIIIHMKEYRVLINNEEVQMAPKEMELFYYLAMNPKQVLTRQQLLDRV 184 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYTLGEK 219 + ++ V+VH+ +R KL I T+ G+GY E Sbjct: 185 WGYEFNGDPRTVDVHIKRIRDKLAEHKAKWSIVTIRGVGYRFEEN 229 >UniRef50_A7HL55 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=A7HL55_FERNB Length = 229 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 72/215 (33%), Positives = 123/215 (57%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +++++EDD + ++ L +G+SV F G E + + VILD+ LP MDG + Sbjct: 6 KLMVVEDDKKLRRLLEIELEHVGYSVVSFESGLDAIEEFKNENPELVILDIMLPDMDGYE 65 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + + R+ +L+LTA +++ G GADDYL KPF E+ AR++AL+RR N Sbjct: 66 VAQNLRKLKPDVLILMLTALGMKKDKLAGFEAGADDYLTKPFDNEELLARIKALLRRKNI 125 Query: 122 QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTW 181 S ++ G++ + +R G+ + L EF LL L +N RV+S++ I + ++ Sbjct: 126 SISQPIKFGSLEIYENQRTVIYNGKNVDLSKTEFDLLLYLAKNKDRVVSKEEILDAVWGI 185 Query: 182 DEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTL 216 D + N VEV+V+++R+KL + I+T+ G+GY L Sbjct: 186 DYYGSDNTVEVYVNYIRKKLSPELIKTIRGVGYKL 220 >UniRef50_B1HZW1 Transcriptional regulatory protein cutR (Defective melC1 suppressor protein) n=6 Tax=Firmicutes RepID=B1HZW1_LYSSC Length = 230 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 81/224 (36%), Positives = 136/224 (60%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M++LL+ED+ ++ I GL K G++VD G++ E YD +ILDL LP MDG Sbjct: 1 MKLLLVEDEAVLSRIISKGLKKSGYAVDTAFDGKEALELFEINEYDLIILDLNLPKMDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++L + R + + +LIL+AR A+ +++ GL GA+DYL KPF E+ AR+ L+RR+ Sbjct: 61 EVLEQIRVQNEDVKILILSARSAIHDKIMGLDCGANDYLIKPFDFQELDARIRNLLRRSF 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 Q S + N+ LD K+I + GE + + KE+A+LE LM + +V+S + + E ++ Sbjct: 121 SQKSAIISFENITLDSSKKIVLVDGEMIHVTKKEYAILEYLMLHQNKVISSEELIEHVWD 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGS-----DFIRTVHGIGYTLGEK 219 + ++ SN+++ H+H LR+K+ + I+T+ G GY + E Sbjct: 181 SETDLFSNSLKFHIHSLRKKIADVLGEIEVIQTIRGQGYIITEN 224 >UniRef50_C9NWS1 DNA-binding heavy metal response regulator n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NWS1_9VIBR Length = 226 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 81/225 (36%), Positives = 124/225 (55%), Gaps = 6/225 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+ILLIEDD I + G + G ++ T G G S YD ++LD+ LP DG Sbjct: 1 MKILLIEDDTHIARFLINGFQQEGCTITHATNGVDGLHEAISESYDVIVLDIMLPQKDGF 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++L + R +G PVLIL+A+ ++ ERV+GL+ GADDYL KPFA E+ AR ++L RR Sbjct: 61 EVLAQLRGEGHATPVLILSAKHSVDERVKGLQSGADDYLVKPFAFPELLARCQSLARRGQ 120 Query: 121 GQASN--ELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 + +L + + LD K G + L +EF L++L++ N V+S+ I E++ Sbjct: 121 QNPAQSYQLSYSELSLDLLKHSLERNGASIQLNQREFMLIKLMLENPETVISKTAILEQV 180 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTLGEK 219 + + +N V+V V LR K+ I T+ G+GY L + Sbjct: 181 WGHQFDPQTNVVDVLVCRLRSKVDKGFDTPLIHTLRGVGYVLKSQ 225 >UniRef50_Q15Y65 Two component transcriptional regulator, winged helix family n=3 Tax=Proteobacteria RepID=Q15Y65_PSEA6 Length = 222 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 94/214 (43%), Positives = 132/214 (61%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD + D + L G++V+ Q AL + + +ILDL LP MDG Sbjct: 1 MRILLVEDDRSLSDALSQSLRSEGYAVNGACTAAQALSALATGEFTIMILDLGLPDMDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++LR+ P LILTARD++ +++ GL GADDYL KPF + E+ ARL + RR Sbjct: 61 EVLRQAHRNKHSVPTLILTARDSMTDKITGLDSGADDYLAKPFDMQELLARLRVMERRLG 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 S+ + GNV+LD T L +EF LL+ LM NAGR+ S+ +E KLY Sbjct: 121 TATSSLINIGNVVLDLATHQVTADNNEKELSRREFMLLKALMENAGRIQSKSQLETKLYE 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGY 214 W +E++SNA+EVH+H+LR+KL DFI+T+ G+GY Sbjct: 181 WGDELSSNAIEVHIHNLRKKLPKDFIKTIRGVGY 214 >UniRef50_Q97LA9 Response regulator (CheY-like receiver domain and HTH DNA binding domain) n=1 Tax=Clostridium acetobutylicum RepID=Q97LA9_CLOAB Length = 221 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 86/220 (39%), Positives = 125/220 (56%), Gaps = 4/220 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M +L++EDD + +K GL + + D G G L YDAVILD+ LP MDG Sbjct: 1 MHLLIVEDDEELSILLKKGLKQYNCTCDISHDGEDGLYNLEINSYDAVILDINLPKMDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + R+ R KG PVL+LTAR +RV GL GADDYL KPF E+ ARL AL+RR Sbjct: 61 TVCRKMRGKGISTPVLMLTARTDTDDRVLGLDSGADDYLGKPFEFKELRARLHALIRRNY 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + SNE++ ++ +D + + + +TL +E+ +LELL N ++S + I E ++ Sbjct: 121 NKPSNEIKIKDLNIDTKAKSVKVGEKLITLTAREYDILELLCYNYPNIVSAEEIIEHVWG 180 Query: 181 WDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 216 ++ SN + VH+ +LRRK+ G I T+ G GY L Sbjct: 181 DNDNQFSNVIRVHIANLRRKIKCSGGETLIETLKGKGYRL 220 >UniRef50_A6CWR0 Two-component system response regulator (Pho family) protein n=5 Tax=Vibrionales RepID=A6CWR0_9VIBR Length = 224 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 83/223 (37%), Positives = 123/223 (55%), Gaps = 6/223 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+ILLIEDD I + G + G +V T G G +A +D +ILD+ LP DG Sbjct: 1 MKILLIEDDSHIAKFLVNGFQQEGITVTHSTDGVDGLHEAVTADFDVIILDIMLPKKDGF 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++L E R +G PV+IL+A+ ++ ERV+GL+ GADDYL KPFA E+ AR + LMRR Sbjct: 61 EVLAELRGQGHATPVIILSAKHSVEERVQGLQSGADDYLVKPFAFPELLARCQTLMRRGK 120 Query: 121 GQASNELR--HGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 + L +G + LD K + + + +EF L++LL+ N V+S+ I E + Sbjct: 121 PPSPQALELNYGPLNLDLLKHTLQREQQNIAINQREFMLMKLLLENPETVMSKTAILEHV 180 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTLG 217 + + +N V+V V LR K+ I T+ G+GY L Sbjct: 181 WGHQFDPQTNVVDVLVCRLRSKVDKGFATPLIHTLRGVGYVLK 223 >UniRef50_A0KN62 DNA-binding response regulator n=41 Tax=Gammaproteobacteria RepID=A0KN62_AERHH Length = 229 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 112/216 (51%), Positives = 148/216 (68%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD+++GDG+ L G++VDW QG L S + A+ILDL LP +DG Sbjct: 1 MRILLVEDDVMLGDGMVDALRSSGYTVDWLQQGLPALSVLKSEEFAALILDLNLPDIDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +LR+ R +GQ PVLILTARDAL +RV GL G+DDY+ KPFAL E+ ARL AL+RR+ Sbjct: 61 SLLRKLRREGQTLPVLILTARDALDDRVLGLDAGSDDYMVKPFALQELNARLRALVRRSK 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 GQA L +G + L P + T GEP+ L P E+ LL+ L+ +GRVLS+ +++ LY Sbjct: 121 GQAQAVLEYGELQLYPESQQVTYRGEPVKLTPHEYKLLQELITQSGRVLSKDQLQQSLYG 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTL 216 WDE SNAVEVH+HHLR+K SD IR + G+GY + Sbjct: 181 WDEGAESNAVEVHIHHLRKKFYSDLIRNIRGVGYIV 216 >UniRef50_Q2G7V2 Two component transcriptional regulator, winged helix family n=1 Tax=Novosphingobium aromaticivorans DSM 12444 RepID=Q2G7V2_NOVAD Length = 227 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 87/225 (38%), Positives = 129/225 (57%), Gaps = 9/225 (4%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL+IED++ + + GL++ G V T G G E S +D ++LD+ LP MDG Sbjct: 1 MRILIIEDEIELAGALHRGLTQEGCKVTLATDGSTGLELAASLAFDFILLDVNLPDMDGF 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR-- 118 ++ RE+G P++++TARD +A+R+ GL+ GADDYL KPFA E+ AR++A+ RR Sbjct: 61 EVCARLREQGSTMPIIMVTARDEIADRIRGLKGGADDYLTKPFAFEELLARMDAIKRRMA 120 Query: 119 ----TNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLI 174 Q + G++ DP T AG P+ L KE +L LLM + G V+SR I Sbjct: 121 PSQGGKVQPDGRITVGDLHFDPRTMTLTRAGTPVQLTVKEMGVLRLLMESPGTVISRTEI 180 Query: 175 EEKLYTWDEEVTSNAVEVHVHHLRRK---LGSDFIRTVHGIGYTL 216 ++ +++ +N VEV++ LRRK LG + V G GY L Sbjct: 181 LRAVWGMEDDPLTNIVEVYLSRLRRKLHALGPPVVENVRGFGYRL 225 >UniRef50_Q8A9Y3 Two-component system response regulator n=8 Tax=Bacteroidales RepID=Q8A9Y3_BACTN Length = 245 Score = 303 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 82/221 (37%), Positives = 127/221 (57%), Gaps = 5/221 (2%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +ILL ED++ I I+ GL + G SV G G L P+D VILD+ +P ++G + Sbjct: 24 KILLAEDEVNIASFIERGLKEFGHSVTVCHDGNTGWRILQEEPFDLVILDIIMPKINGLE 83 Query: 62 ILREWREK-GQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + +R+ G + PV++LTA + V+GL GADDYL KPF+ E+ AR++AL+RR Sbjct: 84 LCHLYRQMFGYQAPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRRNK 143 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 +N+L N++LD R A + L KE+ LLE M + G LSR + + ++ Sbjct: 144 ETVTNQLTCDNLVLDCNTRRAKRGDADIDLTVKEYRLLEYFMTHQGVALSRITLLKDVWD 203 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTLG 217 + + +N V+V+V++LR K+ DF I TV G+GY + Sbjct: 204 KNFDTNTNIVDVYVNYLRVKIDRDFDKKLIHTVVGLGYIMN 244 >UniRef50_A4AF30 Two component transcriptional regulator, winged helix family protein n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AF30_9ACTN Length = 241 Score = 303 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 90/230 (39%), Positives = 127/230 (55%), Gaps = 12/230 (5%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSA-PYDAVILDLTLPGMD- 58 M++L+IEDD+ + D I+ L + G++ G EA YD V+LDL LPG+D Sbjct: 1 MKVLIIEDDVRLADVIRRSLGEAGYATHVAHDAPSGIEAFEVDVTYDLVVLDLMLPGLDV 60 Query: 59 ------GRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARL 112 G + R RE P+L+LTA D + +VEGL GADDYL KPF L+E+ AR+ Sbjct: 61 AGDEPAGMTVCRRIRELDTNVPILMLTALDGMRTKVEGLDAGADDYLVKPFHLVELLARV 120 Query: 113 EALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRK 172 AL+RR+ + L V LD R A G + L KEFA+LE LMRNAGR++S Sbjct: 121 RALLRRSPQAQAPVLTVRGVALDASTRTAERDGRRIQLTAKEFAVLEYLMRNAGRIVSST 180 Query: 173 LIEEKLYTWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTLGE 218 + + + + E SN V+ ++ +LR+KL D I T G GY + + Sbjct: 181 ELIDHAWDSNYEGFSNVVQTYIRYLRQKLTAGGEPDVIETRRGSGYVIEQ 230 >UniRef50_Q99U73 Response regulator arlR n=10 Tax=Firmicutes RepID=ARLR_STAAN Length = 214 Score = 303 bits (778), Expect = 2e-81, Method: Composition-based stats. Identities = 72/219 (32%), Positives = 121/219 (55%), Gaps = 12/219 (5%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 IL++ED+ + ++ L+ ++VD G+ G + S YD +ILDL LP ++G +I Sbjct: 4 ILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSINGLEI 63 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQ 122 R+ R++ Q P++I+TA+ ++V GL GADDY+ KPF + E+ AR+ A++RR Sbjct: 64 CRKIRQQ-QSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR--QP 120 Query: 123 ASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTWD 182 + + +L T+ G + L E+ LL LL N V+ R+ I ++ ++ Sbjct: 121 QKDIIDVNGTLL-----KVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWGYN 175 Query: 183 EEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTLG 217 EV +N V+V++ +LR KL I TV G+GY + Sbjct: 176 SEVETNVVDVYIRYLRNKLKPYDRDKMIETVRGVGYVIR 214 >UniRef50_C9Z8Q7 Putative two-component response regulator n=1 Tax=Streptomyces scabiei 87.22 RepID=C9Z8Q7_STRSW Length = 251 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 88/222 (39%), Positives = 127/222 (57%), Gaps = 8/222 (3%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 R+L+++D+ I + L +G+ V GRQ +A+ D ++LD+ LP + G + Sbjct: 28 RLLVVDDEEGIRSMLTMALEFLGYQVTAAATGRQALQAVTRHDPDLILLDVNLPDLGGFE 87 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + R R++G PVL LT + +RV GL +G DD++ KPF L EVAAR+ AL+RR+ G Sbjct: 88 VCRTLRDRGNAVPVLFLTGLGGVDDRVRGLDMGGDDFVTKPFELKEVAARVRALLRRSGG 147 Query: 122 QAS----NELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEK 177 N LR G + LD A P+ L EFALL LM N GRVLSR I+E+ Sbjct: 148 GRPAPDRNRLRAGAIQLDADAHQVWAADRPVDLTTTEFALLRYLMENPGRVLSRGQIQER 207 Query: 178 LYTWDEEVTSNAVEVHVHHLRRKLGSD---FIRTVHGIGYTL 216 ++ +E S V+ ++++LRRKLG IRTV G+GY L Sbjct: 208 VWNHRDEG-SGVVDTYIYYLRRKLGEPGQSLIRTVRGVGYQL 248 >UniRef50_A5VEY8 Two component transcriptional regulator, winged helix family n=7 Tax=Proteobacteria RepID=A5VEY8_SPHWW Length = 225 Score = 303 bits (777), Expect = 3e-81, Method: Composition-based stats. Identities = 90/222 (40%), Positives = 130/222 (58%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M +LLIEDD + D + GL + G V+ GR+G + +D ++LD LP +DG Sbjct: 1 MHVLLIEDDPRVADHVGKGLREAGHIVETAADGREGLLRAAAESFDVIVLDRMLPQVDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 IL+ R G PVLIL+A + ER+ GLR G DDYL KPFAL E+ AR+EAL RR Sbjct: 61 KILQTIRATGDATPVLILSALGDVDERIRGLRAGGDDYLPKPFALSELVARVEALGRRGP 120 Query: 121 G-QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 + ELR G++ +D R T AG + L +EF +LE L+R+AGRV++R ++ E ++ Sbjct: 121 AIAEATELRSGDLAIDLLGRTVTRAGRRIDLTQREFRILEYLVRSAGRVVTRSMLLEHVW 180 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTLG 217 ++ + +N ++ HV LR+KL I TV G GY + Sbjct: 181 DYNFDPQTNIIDQHVSRLRQKLDRGFDTPLIETVRGTGYVVR 222 >UniRef50_A3QGG3 Two component transcriptional regulator, winged helix family n=8 Tax=Proteobacteria RepID=A3QGG3_SHELP Length = 226 Score = 303 bits (777), Expect = 3e-81, Method: Composition-based stats. Identities = 82/221 (37%), Positives = 128/221 (57%), Gaps = 4/221 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LL+EDD+ + + ++ L +++D + G +G PYDA I+D+ LP +DG Sbjct: 1 MRLLLVEDDLALQENLRQHLLDANYTLDIASDGEEGLFQGREYPYDAAIIDVGLPKLDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++ RE+G P+LILTARD ++VEGL GADDYL KPF E+ ARL+AL+RR Sbjct: 61 ALIARLREEGIDYPILILTARDNWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRAA 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G++S +++G L+ + ++L E+ L E M + G V S+ ++ E +Y Sbjct: 121 GKSSPVIQNGPYSLNTSSHEIKFGDQDVSLSGSEYKLFEYFMLHIGEVKSKSILIEHIYD 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYTLG 217 D ++ SN +EV + LR+KL + I T+ G GY L Sbjct: 181 QDFDLDSNVIEVFIRRLRKKLDPNGQYGLIETLRGQGYRLK 221 >UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=Bacteria RepID=C3WCS3_FUSMR Length = 223 Score = 303 bits (777), Expect = 3e-81, Method: Composition-based stats. Identities = 75/215 (34%), Positives = 127/215 (59%), Gaps = 1/215 (0%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RIL+++D+ I + ++ L K G+ V G +G + Y P+D VILD+ LP DG Sbjct: 8 RILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKLFYEKPFDLVILDVMLPKKDGWS 67 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 ILRE +K PV++LTARD + V G +GADDY+ KPF + AR+++L+R+TN Sbjct: 68 ILREI-KKYTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLRKTNN 126 Query: 122 QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTW 181 + + G+++++ + + + L PKE+ LL L++N LSR+ + +++ + Sbjct: 127 MVESIIEIGDLVINDTSHSVSNSKGEIELAPKEYDLLVYLIKNNKIALSREKLLNEVWGY 186 Query: 182 DEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTL 216 D ++ H+ +LR+K+G + I+T+ GIGY L Sbjct: 187 DFLGDDRTIDTHIKNLRKKIGKNAIKTIRGIGYKL 221 >UniRef50_B4WP26 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WP26_9SYNE Length = 676 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 83/223 (37%), Positives = 120/223 (53%), Gaps = 6/223 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD + + L+ + VD G G + + S YD +ILD+ LP +DG Sbjct: 1 MRILLVEDDESVAKILHKVLTDEHYIVDVAYTGHIGWQLVSSFNYDLIILDVLLPELDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++ R + PVL +TA D +E++ GL GADDY+ KPF L E+ AR+ AL+RR Sbjct: 61 KFCQQLRAQEYTLPVLFVTALDDSSEKIAGLNAGADDYITKPFELEELLARVRALLRRGK 120 Query: 121 GQAS-NELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 L + L+ R T L+L PKE A+LEL +RN + SR+ I + L+ Sbjct: 121 TSVVLTTLEWEGLRLEVNSRELTYRNNKLSLTPKEHAMLELFLRNPAQAFSREAIIDNLW 180 Query: 180 TWDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLG 217 ++ + V H+ LRRKL +D I TV+G+GY L Sbjct: 181 SYSDAPGEETVTSHMKGLRRKLRTVGAPADLIETVYGVGYRLK 223 Score = 72.4 bits (178), Expect = 9e-12, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 57/124 (45%), Gaps = 2/124 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +IL ++DD + +KT L+ + + + + + L D ++LD+++P G + Sbjct: 540 KILAVDDDSQLLQTLKTRLALENYQIVTLDKPLEFWKTLQDENPDLLLLDISMPQFTGIE 599 Query: 62 ILREWRE--KGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 + + R + P++ TA + + G D+ + K + ++ A LE M+R+ Sbjct: 600 LCQTVRRSPAWRHLPIVFFTAHAEPHLQQAAFKAGGDNLIEKSLSDAQLLAHLEHQMKRS 659 Query: 120 NGQA 123 Q Sbjct: 660 YLQQ 663 >UniRef50_C8VW64 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C8VW64_DESAS Length = 229 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 122/224 (54%), Gaps = 9/224 (4%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RIL ++DD I ++ L K GF V + G + + + D VILDL +PGMDG + Sbjct: 4 RILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLMMPGMDGFE 63 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR--- 118 ++ + + + P++IL+AR +RV G R+G DDY KPF+ E+A R++A++RR Sbjct: 64 TYQKLKAQ-REVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVLRRLGE 122 Query: 119 TNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 N L++GN+ LD KR + + L PK+F LL L+ N RV ++ + +K+ Sbjct: 123 PKVNLENMLKYGNLTLDYTKRTVAVNNSKVELTPKQFELLWLMASNPNRVFTKAHLLDKI 182 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLG-----SDFIRTVHGIGYTLG 217 + N V VH+ LR K+ ++I+TV G+GY Sbjct: 183 WDSSFYGDDNTVTVHIRRLREKVETDPSNPEYIKTVWGMGYKFE 226 >UniRef50_Q2S8G9 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=3 Tax=Proteobacteria RepID=Q2S8G9_HAHCH Length = 228 Score = 302 bits (776), Expect = 4e-81, Method: Composition-based stats. Identities = 86/221 (38%), Positives = 126/221 (57%), Gaps = 4/221 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+ED+ L+ ++ L K G++VD G PYD ++DL LP G Sbjct: 1 MRILLVEDEALLRGQLRDELVKHGYAVDTAEDGEVAAYLGKENPYDLAVVDLGLPKRTGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++++EWR G+ P+LILTAR ++V GL GADDYL KPF + E+ ARL AL+RR++ Sbjct: 61 EVIQEWRGMGKEFPILILTARGHWQDKVSGLEAGADDYLVKPFHVAELMARLGALLRRSS 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G +S ++ G + LD ++ + G L L E+ LE L+ AG+ +S+ + E LY Sbjct: 121 GFSSPVIQAGPMTLDTRAKLVQIDGSALELTAYEYNTLEYLVHRAGQAVSKTELTEHLYA 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYTLG 217 D + SN +EV + LR+KL D I T+ G GY Sbjct: 181 QDFDRDSNVIEVFIGRLRKKLDPDGVNKPITTLRGQGYRFN 221 >UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candidatus Chloracidobacterium thermophilum RepID=A8DJW5_9BACT Length = 242 Score = 302 bits (776), Expect = 4e-81, Method: Composition-based stats. Identities = 81/224 (36%), Positives = 131/224 (58%), Gaps = 6/224 (2%) Query: 1 MR--ILLIEDDMLIGDGIKTGLSKMG-FSVDWFTQGRQGKEALYSAPYDAVILDLTLPGM 57 M+ I++IEDD I I+ L + G F V T G G + P + ++LD+ LP M Sbjct: 1 MKRSIVIIEDDTDIAQSIRYNLEQEGSFHVTITTTGEAGLRTVLEHPPNLILLDINLPLM 60 Query: 58 DGRDILREWREKGQR--EPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEAL 115 +G +I R R + P+++LTAR +++ GL LGADDY+ KPF++ E+ AR+ A+ Sbjct: 61 NGFEICRRLRREEATAHVPIIMLTARTDETDKIHGLGLGADDYITKPFSVRELMARINAV 120 Query: 116 MRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIE 175 +RRT G S+ G + +D + G+ + L KEFALL+LL ++ GRVL+R+ + Sbjct: 121 LRRTEGTPSSVYDDGTLFIDYNHFVVRCQGQEINLTRKEFALLKLLAQSKGRVLTREYLL 180 Query: 176 EKLYTWDEEVTSNAVEVHVHHLRRKLG-SDFIRTVHGIGYTLGE 218 ++++ D + + ++VH+ +R+KLG +I T GIGY E Sbjct: 181 DRVWGIDYDGETRTLDVHIRRVRQKLGIDGYIETAVGIGYRFVE 224 >UniRef50_Q83N47 Two-component system response regulator n=8 Tax=Actinobacteridae RepID=Q83N47_TROWT Length = 251 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 119/223 (53%), Gaps = 5/223 (2%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +IL+++D+ I D + L G+ V G A+ + D +I+D+ LP M G Sbjct: 29 KILVVDDEANIRDLLAASLRFAGYGVVTAGNGAGAVSAVLAEEPDLIIMDVMLPDMSGFA 88 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN- 120 + RE G R PV+ L+ARD+ +++ GL +G DDY+ KPF+L E+ AR+ A++RRT Sbjct: 89 ATKRLREAGFRCPVIFLSARDSTEDKITGLTVGGDDYVTKPFSLDEILARVAAILRRTKI 148 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 +R G++++D L G + L P EF LL M N RVLS+ I ++ Sbjct: 149 DDVDATIRVGDLVIDQNSNEVFLKGNLIDLSPTEFKLLRYFMLNPNRVLSKSQILGHVWD 208 Query: 181 WDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYTLGEK 219 +D + S+ VE ++ ++RRKL I T G GY + + Sbjct: 209 YDFDGDSSIVESYISYIRRKLAAYSSETIIHTKRGFGYIMRTR 251 >UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=Q2RZP5_SALRD Length = 245 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 85/230 (36%), Positives = 129/230 (56%), Gaps = 12/230 (5%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RILL+EDD I D ++ L+ G +VD G G + YD ++LD+ LPG DG D Sbjct: 8 RILLVEDDDDIADLLELHLTDAGHAVDVVGDGDDGLARALTEAYDLIVLDIMLPGTDGFD 67 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR--- 118 I R R++ P+L++TA+ ++V GL LGADDY+ KPF++ EV AR++AL RR Sbjct: 68 ICRRLRQEKCPTPILMVTAKTEEVDKVLGLELGADDYITKPFSIREVLARVKALFRRVEV 127 Query: 119 ----TNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLI 174 + G V+++P KR T+ GE + L KEF LL L R+ GR SR + Sbjct: 128 DQETQGQADDTPIELGKVVVEPEKRKVTVEGEAVDLTSKEFELLLLFARHPGRAFSRDEL 187 Query: 175 EEKLYTWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGEK 219 ++++ + S+ V H++ LR K+ D +++TV G+GY E+ Sbjct: 188 LDEVWGYQYSGYSHTVNTHINRLRNKIEPDPSEPRYVKTVWGVGYRFAER 237 >UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Tax=Firmicutes RepID=SRRA_STAA8 Length = 241 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 115/231 (49%), Gaps = 15/231 (6%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 IL+++D+ I +K L + F + + G++ E Y ++LDL LP MDG + Sbjct: 5 ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQV 64 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN-- 120 + RE + P+++LTA+ RVEG GADDY+ KPF+ EV R++AL+RRT Sbjct: 65 ATKLREHK-QTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQST 123 Query: 121 ------GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLI 174 A + + ++ +D + + L PKE+ LL L + +V R+ + Sbjct: 124 TVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQL 183 Query: 175 EEKLYTWDEEVTSNAVEVHVHHLRRKL------GSDFIRTVHGIGYTLGEK 219 ++++ ++ V+ HV LR KL + I+TV G+GY K Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEVK 234 >UniRef50_B5D1V8 Putative uncharacterized protein n=2 Tax=Bacteroides RepID=B5D1V8_9BACE Length = 231 Score = 302 bits (775), Expect = 5e-81, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 128/226 (56%), Gaps = 9/226 (3%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 IL+IEDD + D +KTGL + G+ G G S + VI D+ LP +DG ++ Sbjct: 4 ILIIEDDKRVADLLKTGLEENGYHTMVAYDGAMGLRLFQSHSFQLVISDIILPKLDGFEL 63 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQ 122 +E R+ PVL+LTA + ++++G GADDY+ KPF E+ AR++ L++R Sbjct: 64 CKEIRKANPHIPVLMLTALGSTDDKLDGFDAGADDYMVKPFDFRELNARIKVLLKRKAEA 123 Query: 123 -----ASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEK 177 A +L + ++ +D +R G + L PKE+ LL +++NA RV+SR I EK Sbjct: 124 TVSVVAPEKLTYKDLQIDTNRREVMRQGNLIRLSPKEYNLLTYMVQNAERVISRIEIAEK 183 Query: 178 LYTWDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTLGEK 219 ++ + +N ++V++++LR+K+ DF I T GIG+ L ++ Sbjct: 184 VWNTHFDTGTNFIDVYINYLRKKIDKDFETKLIHTKPGIGFILTDE 229 >UniRef50_B0C620 Two component transcriptional regulator, winged helix family n=19 Tax=Bacteria RepID=B0C620_ACAM1 Length = 226 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 86/220 (39%), Positives = 129/220 (58%), Gaps = 4/220 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RIL+ ED+ I D +K GL GF+ G Q S +D +ILDL LP DG Sbjct: 3 RILIAEDNPHIVDFLKAGLKAHGFTALVAEDGGQAANLACSDQFDLLILDLGLPRKDGLT 62 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMR-RTN 120 +LRE R +G+ P+++LTARD + + V+ L GA+DY+ KPF E+ AR++ +R R Sbjct: 63 VLREIRGQGELLPIIVLTARDGVDDTVQALERGANDYMTKPFRFEELLARIKVQLRDRRI 122 Query: 121 GQASNE---LRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEK 177 G L+ GN+ LD R A + + L KEF L E+L+R+ +V+S++ + + Sbjct: 123 GAQPPSETHLQVGNLSLDLLTRQAWVGNRVVELSAKEFILAEVLLRHPMQVMSKEQLLNR 182 Query: 178 LYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLG 217 ++ +D + SN +EV++ HLRRK GS +I TV G+GY L Sbjct: 183 VWGYDYDPGSNIIEVYIRHLRRKFGSQYIETVRGMGYRLN 222 >UniRef50_B0KKE4 Two component transcriptional regulator, winged helix family n=22 Tax=Proteobacteria RepID=B0KKE4_PSEPG Length = 222 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 96/216 (44%), Positives = 131/216 (60%), Gaps = 1/216 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LL+ED++ + D + GL + G++VDW GR S PYD +ILDL LPG+ G Sbjct: 1 MRLLLVEDNVPLADELTAGLQRQGYAVDWLADGRDAVYQGQSEPYDLIILDLGLPGLPGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++L +WR G PVLILTAR + AER+EGL+ GADDYL KPF E+ R++AL+RR Sbjct: 61 EVLAQWRAAGLATPVLILTARGSWAERIEGLKAGADDYLSKPFHPEELQLRIQALLRRAR 120 Query: 121 GQA-SNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 G A +L + LD ++ + G + L EF LL M + ++LS+ + E LY Sbjct: 121 GLANQPKLEAAGLHLDESRQCVSRDGVDIQLTAAEFRLLRYFMLHPQQILSKSHLAEHLY 180 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYT 215 + E SN +EVHV+HLRRKLG I T G GY Sbjct: 181 DGETERDSNVLEVHVNHLRRKLGRSVIETRRGQGYI 216 >UniRef50_B1ZS16 Two component transcriptional regulator, winged helix family n=3 Tax=Verrucomicrobia RepID=B1ZS16_OPITP Length = 265 Score = 301 bits (774), Expect = 7e-81, Method: Composition-based stats. Identities = 94/221 (42%), Positives = 141/221 (63%), Gaps = 4/221 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL++ED+ +G ++ L++ ++ + ++ L + +DAV+LDL LP DG Sbjct: 45 MKILVVEDERRVGQFVEKALTEQNYTARLVRTCAEARDVLAESTFDAVVLDLGLPDGDGL 104 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 D+LREWR G EPVL+L+ARDA+ +RV GL +GADDYL KPF++ EV AR+ +L+RR Sbjct: 105 DLLREWRASGFNEPVLVLSARDAVGDRVRGLNMGADDYLPKPFSVDEVVARVRSLLRRHA 164 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G + L HG V +D R T AG P+ L +E+ALLEL ++N RVL+R LI EK++ Sbjct: 165 GVKTTVLTHGPVRMDLLGRSVTCAGRPVELTSREYALLELFLQNPRRVLTRTLIAEKVWE 224 Query: 181 WDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYTLG 217 ++ +N ++V+V LR+KL I+T+ G GY L Sbjct: 225 ASYDLETNLIDVYVRRLRQKLEAPGQPPLIKTIRGTGYQLS 265 >UniRef50_C5D2L7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillaceae RepID=C5D2L7_GEOSW Length = 225 Score = 301 bits (774), Expect = 8e-81, Method: Composition-based stats. Identities = 77/219 (35%), Positives = 125/219 (57%), Gaps = 5/219 (2%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 +L+++D+ + + L FS G + + L + D +++D+ +P MDG + Sbjct: 6 VLIVDDEEDMRFLVGMYLENANFSYLEAENGEEALQILKNNKVDVILIDVMMPKMDGFTL 65 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR--TN 120 RE+ P+L LTAR ++V+GL+LG DDY+ KPF+ E+ AR+EA+MRR N Sbjct: 66 CARIREQS-DVPILFLTARGDEWDKVKGLKLGGDDYIVKPFSPGELIARIEAIMRRAYHN 124 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 Q + +L G +++D R T+ G+P+ L KEF LL L ++ G+V SR+ + +++ Sbjct: 125 KQKNEDLSFGPLVIDERGRKVTVDGDPVVLTLKEFDLLLFLAKHHGQVFSREDLLAQVWG 184 Query: 181 WDEEVTSNAVEVHVHHLRRKL--GSDFIRTVHGIGYTLG 217 +D + V+ H+ LR KL SDFI+TV GIGY Sbjct: 185 YDYTGNARTVDTHIKTLRMKLKQASDFIQTVWGIGYKFE 223 >UniRef50_C1SIE7 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SIE7_9BACT Length = 240 Score = 301 bits (774), Expect = 9e-81, Method: Composition-based stats. Identities = 80/224 (35%), Positives = 134/224 (59%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL+++D++ + D +K+ L K +SVD G G + ++ Y +ILD+ LP MDG Sbjct: 14 MKILIVDDEVQLVDELKSILEKSKYSVDTAVSGDSGLDKIFDNEYSLIILDVMLPVMDGF 73 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 IL RE PVL+LTA+ +++R++GL G+DDYL KPFA+ E+ AR+ AL+RR N Sbjct: 74 CILEAVREASITTPVLMLTAKSDVSDRIKGLDKGSDDYLVKPFAVSELLARVRALLRRDN 133 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + L+ +++L+ G PL L KE+ + E L+ N RV+++ + ++ Sbjct: 134 LDKNPFLKVADIVLNTVSCDVVKDGHPLKLTRKEYMVFEYLLYNKNRVVTKAALAGHVWG 193 Query: 181 WDEEVT--SNAVEVHVHHLRRKLGSD---FIRTVHGIGYTLGEK 219 + + SN ++VH+ +LR+K+G + IRT GIGY + ++ Sbjct: 194 DEFDEFNASNFIDVHIKNLRKKIGDENHLIIRTKRGIGYIINDQ 237 >UniRef50_Q2T4E0 DNA-binding response regulator n=76 Tax=Bacteria RepID=Q2T4E0_BURTA Length = 255 Score = 301 bits (773), Expect = 9e-81, Method: Composition-based stats. Identities = 108/218 (49%), Positives = 144/218 (66%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LL+EDD LIG G++ GL + GF+VDW G AL + Y ++LDL LP DG Sbjct: 36 MRVLLVEDDPLIGSGLEQGLKQEGFAVDWVQNGDAATLALRTTSYGLLLLDLGLPDKDGL 95 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L R + PV+++TARDAL +R+ GL GADDYL KPFAL E+ AR+ A+ RR Sbjct: 96 AVLAALRRRDDALPVIVVTARDALPDRIAGLDCGADDYLVKPFALEELLARIRAVNRRQT 155 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G+A L G + LDP + G+ + L PKEF LL LMR G V+SR+ EE+LY+ Sbjct: 156 GRAQTVLTVGALRLDPARHQVWRGGDEVALSPKEFVLLHELMREPGAVISREQFEERLYS 215 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE 218 W EE+ SNAV+VH+H+LR+KLG D I TV G+GY +G+ Sbjct: 216 WGEEIESNAVQVHIHNLRKKLGHDTILTVRGVGYRIGD 253 >UniRef50_A9KR75 Two component transcriptional regulator, winged helix family n=64 Tax=Firmicutes RepID=A9KR75_CLOPH Length = 238 Score = 301 bits (773), Expect = 9e-81, Method: Composition-based stats. Identities = 64/232 (27%), Positives = 118/232 (50%), Gaps = 15/232 (6%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +IL+++DD I + I L K F G + + ++LDL LPG+DG + Sbjct: 6 KILIVDDDANIAELISLYLMKECFDTKIVYDGEEAITQYREYQPNLILLDLMLPGIDGYE 65 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR--- 118 + RE R+ P+++L+A+ + ++V GL LGADDY+ KPF E+ AR++A++RR Sbjct: 66 VCREVRKTS-TIPIIMLSAKGEIFDKVLGLELGADDYMIKPFDTKELVARVKAVLRRVVP 124 Query: 119 TNGQASNELR--------HGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLS 170 + + + + +++++ T G+ + + PKE L L + +V + Sbjct: 125 SQSTSEQVITQELGDFVSYPDLIINQSNYSVTYFGDSIEMPPKELELFYFLASHPNQVFT 184 Query: 171 RKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDF---IRTVHGIGYTLGEK 219 R+ + + ++ ++ + V+VH+ LR K+ + TV GIGY K Sbjct: 185 REQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDHISWRLSTVWGIGYKFEVK 236 >UniRef50_Q38YC7 Two-component system, response regulator (Possibly involved in phosphate regulation) n=12 Tax=Lactobacillales RepID=Q38YC7_LACSS Length = 237 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 77/231 (33%), Positives = 124/231 (53%), Gaps = 13/231 (5%) Query: 1 MR-ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDG 59 M+ IL+++D+ I ++ L + F V T G Q +D +ILDL LP +DG Sbjct: 1 MKTILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQKFDFIILDLMLPKLDG 60 Query: 60 RDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 + ++ RE + P++ILTA+D +++ GL +GADDY+ KPF+ E+ AR+ A+ RRT Sbjct: 61 IAVTKKIREAKLKTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIERRT 120 Query: 120 NG-------QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRK 172 QAS + G++ +D + IA L L PKEF LL M +V SR+ Sbjct: 121 TQPIEQPVEQASETIVVGDLSVDETEVIAKKGDHKLHLTPKEFELLVYFMHRLNKVQSRE 180 Query: 173 LIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218 + ++ +D + V++ V HLR K+ + +++TV G GY L + Sbjct: 181 KLLNAVWGFDYPAETRMVDIQVSHLREKIEDNPRHPVYLKTVRGFGYQLED 231 >UniRef50_B8G7R1 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G7R1_CHLAD Length = 234 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 93/222 (41%), Positives = 130/222 (58%), Gaps = 7/222 (3%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 IL+++D+ I + K L G+ V T G +G + D ++LDL LPGMDG +I Sbjct: 5 ILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLMLPGMDGMEI 64 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQ 122 REK +L+LTAR +RV GLR+GADDYL KPF+ E+ AR+EA++RR G+ Sbjct: 65 TARLREKS-DVFILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAILRRRRGK 123 Query: 123 A--SNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 S+ +R +V +DP R A AG+ L L P EF LL L RN RVLSR+ + EK++ Sbjct: 124 PVKSSVMRFTHVEIDPDAREARAAGQLLELTPTEFDLLIALARNHNRVLSREDLIEKVWG 183 Query: 181 WDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTLGE 218 D T V+V+V +RRK+ G + IRT G+GY + Sbjct: 184 ADFYGTDRVVDVYVSQVRRKIEALTGENLIRTARGVGYRFVD 225 >UniRef50_Q48H36 DNA-binding response regulator n=6 Tax=Gammaproteobacteria RepID=Q48H36_PSE14 Length = 222 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 95/215 (44%), Positives = 134/215 (62%), Gaps = 1/215 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LL+ED + + D + L + G++VDW GR + PYD ++LDL LPGM G Sbjct: 1 MRLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGATEPYDLIVLDLGLPGMPGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++L++WR KG PVLILTAR + +ER+EGL+ GADDYL KPF E+ R++AL+RR++ Sbjct: 61 EVLQQWRGKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120 Query: 121 GQA-SNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 G A L + LD G++ + G + L EF LL M + G++LS+ + E LY Sbjct: 121 GLANQPTLESAGLNLDEGRQSVSRDGVDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGY 214 + E SN +EVHV+HLRRKLG + T G GY Sbjct: 181 DGENERDSNVIEVHVNHLRRKLGRAVVETRRGQGY 215 >UniRef50_A5UPS1 Two component transcriptional regulator, winged helix family n=7 Tax=Chloroflexi RepID=A5UPS1_ROSS1 Length = 245 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 85/225 (37%), Positives = 119/225 (52%), Gaps = 10/225 (4%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 ILL+EDD ++ + + + GF V + G G E D +ILD+ LPG+DG + Sbjct: 4 ILLVEDDSVLLETLSYNFERAGFQVATASDGLTGLEMARRTHPDLIILDVMLPGLDGFSV 63 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMR----R 118 R K P+++LTA A R+ GL LGA DY+ KPF++ E+ AR+ A++R + Sbjct: 64 CRAV-AKETTVPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILRWNERQ 122 Query: 119 TNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 +SN L G V LD R + L KEF LL LM NAG LSR L+ E++ Sbjct: 123 RQTPSSNVLCVGPVQLDRNSRRVWYKDREIELSHKEFDLLACLMHNAGVALSRDLLLERV 182 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218 + D ++ ++VHV LR KL D IRTV GIGY + Sbjct: 183 WGSDFLGSNRTIDVHVRWLREKLEPDPANPTLIRTVRGIGYCFQD 227 >UniRef50_C8KZR7 Two component transcriptional regulator n=5 Tax=Proteobacteria RepID=C8KZR7_9PAST Length = 225 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 99/218 (45%), Positives = 142/218 (65%), Gaps = 2/218 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD +I D + L ++VDW G+ +EAL YD V+LDL LPG DG Sbjct: 1 MRILLVEDDRMIADAVSANLKDNHYAVDWVNNGKTAEEALMIQSYDLVLLDLGLPGQDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L R+K PVLI+TARD L R+ GL GADDY+ KPF + E+ AR+ A++RR Sbjct: 61 QVLSHIRQKKNSTPVLIVTARDDLDSRLSGLDGGADDYIIKPFDMAELQARMRAVLRRHG 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGE--PLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 GQ+S +L +G + LDP + +AG+ +TL KEF++L L+ AG +LSR +E+K+ Sbjct: 121 GQSSPKLTNGVITLDPTSYVVEIAGQNSTITLSNKEFSVLHALISRAGMILSRADLEDKI 180 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTL 216 Y W EEV SNA++ +H LR+K+G + I+ V G+G+ + Sbjct: 181 YAWGEEVESNAIDFLIHGLRKKIGKEQIKNVRGVGWMM 218 >UniRef50_A5WDA5 Two component transcriptional regulator, winged helix family n=14 Tax=Gammaproteobacteria RepID=A5WDA5_PSYWF Length = 224 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 115/216 (53%), Positives = 148/216 (68%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RILLIEDD I DGI GL G VDWF+ +QG+ AL +DAV+LDLTLP DG Sbjct: 3 RILLIEDDSTIADGIVLGLKSHGMMVDWFSDAKQGEIALQDGMFDAVLLDLTLPKGDGMT 62 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 +L+ WR K PVLI+TARDA+A RV GL GADDYL KPFAL EV ARL+ALMRR+ G Sbjct: 63 VLKNWRAKHIDTPVLIITARDAIANRVAGLNAGADDYLVKPFALDEVVARLQALMRRSQG 122 Query: 122 QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTW 181 + E+R+G V P + + G+ + L KE A+LE ++ + ++ SR +E+KLY W Sbjct: 123 RCQPEVRYGEVAYQPQNQQVSYQGKMVELTIKEVAILEQMLTHPKQIHSRASLEDKLYGW 182 Query: 182 DEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLG 217 +++ SNA+EVH+HHLR+KLG+DFI T GIGY L Sbjct: 183 QQDIESNAIEVHIHHLRKKLGNDFILTKRGIGYYLN 218 >UniRef50_B5JI66 Response regulator receiver domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JI66_9BACT Length = 224 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 79/222 (35%), Positives = 129/222 (58%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M++L+ ED + + + GL + G++VD G + YDA I D+ +PG DG Sbjct: 1 MKVLVAEDQTKVANFLAKGLGEAGYTVDLAKDGDEASWLAELHEYDAWIFDIMMPGRDGV 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++R+ R G+R P ++LTAR+ + +RV+GL GADDYL KPF+L E+ ARL A++RR Sbjct: 61 SLIRQLRRNGKRTPTILLTARNRVEDRVQGLDAGADDYLAKPFSLTELLARLRAILRRQR 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + +N + ++ LD A ++L +EF+LLELLM + R +S+ I EK++ Sbjct: 121 PEMNNLVSVSDLKLDLVSHTAWRGQREISLTNREFSLLELLMLASPRPVSKSAITEKVWD 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYTLGE 218 + +N V+V++ +LR K+ I+T GIGY + + Sbjct: 181 QSYDAGTNIVQVYIKYLREKIDQEGEPPLIQTARGIGYAIRD 222 >UniRef50_A9AWM9 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWM9_HERA2 Length = 232 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 88/229 (38%), Positives = 135/229 (58%), Gaps = 12/229 (5%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RIL+++D+ + D +++ + GF+V G L + YD +ILD+ LPG+DG Sbjct: 3 RILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDGFG 62 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 +LR+ R +G +PV++LTAR +RV GL LGADDY+ KPF+ E+ AR+ AL+RRT Sbjct: 63 VLRQMRAEGFEQPVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRRTAE 122 Query: 122 QASNELRHGN-------VMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLI 174 + + G+ + LD +R AT LTL+PKEF LL L + G+V +R+++ Sbjct: 123 ASRLRQQIGDAAPTSSGLQLDNARRRATFRDVQLTLRPKEFDLLAYLASHPGQVFTREVL 182 Query: 175 EEKLYTWDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGE 218 +++ +DE V + V+VH+ LR KL S+ I+T GIGY E Sbjct: 183 LGQVWGYDEYVDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGYRFIE 231 >UniRef50_C0YVQ4 Response regulator n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YVQ4_9FLAO Length = 224 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 127/224 (56%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M ILL+EDD I + + GLS+ G+++ G + +E L++ +D +++D+ LPG+DG Sbjct: 1 MNILLVEDDQRISNFLIKGLSEAGYNITLADSGEKARELLHTYDFDIILMDIMLPGLDGM 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR-- 118 + + R KG P+L+L+A ++ ++++ L +GADDYL KPF E+ +R++AL RR Sbjct: 61 QLTQIIRFKGNYTPILVLSALNSPDDKIKMLDMGADDYLSKPFHFEELISRIKALTRRNK 120 Query: 119 -TNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEK 177 + + L GN+ +D T + + P E+ L LM N +VLSR I Sbjct: 121 LSYKKEDQYLSCGNITIDTDLHKVTQNDKEIEFSPTEYKLFTFLMENKNKVLSRTQILHN 180 Query: 178 LYTWDEEVTSNAVEVHVHHLRRKLGS---DFIRTVHGIGYTLGE 218 ++ D + T+N V+V++ ++R K+ I TV G GY + + Sbjct: 181 VWGIDFDNTTNVVDVYISYIRNKIDETEQKIIHTVKGTGYLIKD 224 >UniRef50_Q2RYR0 Response regulator receiver domain protein n=2 Tax=Rhodothermaceae RepID=Q2RYR0_SALRD Length = 247 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 86/219 (39%), Positives = 128/219 (58%), Gaps = 5/219 (2%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +LL+ED+ + ++ GL++ G+ V W GR+G + D V+LD+ LP + G + Sbjct: 6 HLLLVEDEPDVASFVQQGLNEEGYEVSWVEAGRRGLDYARQGGIDLVLLDIRLPDLSGLE 65 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + R P+L+LTA DA+ +RV GLR GADDYL KPFA E+ AR+EAL+RR + Sbjct: 66 VCERLRLHRPELPILMLTALDAVEDRVRGLRAGADDYLPKPFAFDELLARIEALLRRVDR 125 Query: 122 QASN-ELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + + G ++LDP R T GE + L P EF LL LM G+ LSR I ++++ Sbjct: 126 PSEPGRVEDGPLVLDPAARTCTFDGEEVDLTPTEFDLLAFLMARHGQALSRDTIHQEVWG 185 Query: 181 WDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYT 215 D + +N ++V+V+++RRKL I TV GIGY Sbjct: 186 HDFDRGTNLIDVYVNYVRRKLDEVGCEAPIETVRGIGYR 224 >UniRef50_C6CWW2 Two component transcriptional regulator, winged helix family n=2 Tax=Paenibacillus RepID=C6CWW2_PAESJ Length = 239 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 77/225 (34%), Positives = 127/225 (56%), Gaps = 10/225 (4%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 ++L+IED+ + + L++ G+ G G + +D +ILD+ LPG++G + Sbjct: 4 KVLVIEDEPTLARLLSYNLTQEGYDTTVIDHGATGLQTALQRNFDLIILDIMLPGLNGFE 63 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 IL R+ G + P++ILTAR+A E V+GL+ GADDY+ KPF + E+ AR+ A++RRT Sbjct: 64 ILTRLRQNGVKTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVLRRTQQ 123 Query: 122 -------QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLI 174 + + G++ + P K L GE + L+PKEF +L L++ G V++R + Sbjct: 124 DDSVPIETSEKVITVGDLSIYPEKYEVILNGETVPLRPKEFEVLLYLVQRPGMVITRDDL 183 Query: 175 EEKLYTWDEEVTSNAVEVHVHHLRRKLG---SDFIRTVHGIGYTL 216 ++ +D V+VHV LR+KL S I ++ G+GY L Sbjct: 184 MNVVWGFDYIGGQRTVDVHVSSLRKKLELGQSVQIESIRGVGYKL 228 >UniRef50_Q6AQP4 Probable two-component system response regulator (Pho family) n=1 Tax=Desulfotalea psychrophila RepID=Q6AQP4_DESPS Length = 224 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 86/222 (38%), Positives = 130/222 (58%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M++LLIEDD+ I D I+ GL + GF+VD GR+G Y A I+D+ LP DG Sbjct: 1 MKLLLIEDDLTIADLIQKGLEEAGFAVDSCHNGREGLSHALKGAYSAAIIDIMLPERDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 I+ E R G+ PVLIL+A+ ++ +R++GL+ G DDY+ KPF+ E+ R++AL+RR Sbjct: 61 SIIEEMRAAGKETPVLILSAKQSVDDRIQGLQRGGDDYMIKPFSFGELLVRVQALIRRDQ 120 Query: 121 GQASNE-LRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 + L G + +D ++ G + L KE+ALL + NAG LS+ I EK+Y Sbjct: 121 KHSPQTRLSIGPLEMDLLRQQVCRDGGQIELPAKEYALLLYMAENAGTALSKTSILEKVY 180 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTLG 217 ++ + +N V+V V LR K+ F I+T+ G+GY L Sbjct: 181 GYNFDPQTNVVDVLVCRLRAKIDKGFGQQLIQTIRGVGYVLR 222 >UniRef50_B2JHN0 Two component transcriptional regulator, winged helix family n=4 Tax=Burkholderia RepID=B2JHN0_BURP8 Length = 228 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 103/218 (47%), Positives = 139/218 (63%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD LIG G++ L GF+VDW G+ + AL + Y VILDL LP + G Sbjct: 10 MRILLVEDDDLIGSGLEVALRNAGFTVDWARDGQHAELALATTHYLLVILDLGLPKLSGM 69 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 D+L+ R +G PVL+LTA+D A++V GL GADDYL KPF L E+ +R AL+RR+ Sbjct: 70 DLLKSLRLRGNEIPVLVLTAKDTAADKVRGLDAGADDYLGKPFDLAELISRCRALIRRSQ 129 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G+ S + + +DP + + G + L +E+A+L L+ +AG R IEE LY Sbjct: 130 GRGSELIEWRGLSVDPVAQTVSKDGARVPLTAREWAVLIHLLTHAGVPQPRARIEESLYG 189 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE 218 W EEV SNA+EVHV +LR+KLG D IRTV G GY + + Sbjct: 190 WHEEVESNAIEVHVSNLRKKLGGDVIRTVRGFGYVVDK 227 >UniRef50_B2HUW9 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=12 Tax=Acinetobacter RepID=B2HUW9_ACIBC Length = 220 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 89/218 (40%), Positives = 136/218 (62%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL EDD + I++ L G+ VDW +G A+ YD ++LD LP + G Sbjct: 1 MRILLAEDDRSQAESIQSWLELDGYQVDWVERGDYALTAIEQHDYDCILLDRGLPQLAGE 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L R K + PV+ +TARD++ +RVEGL LGA+DYL KPF+L E++AR+ A +R+ Sbjct: 61 KVLTTIRHKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQLRKQT 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + L G++ LD ++ AG+ + L KEF +L LM + +++R +EE LY Sbjct: 121 LNQQSILTWGDLQLDTQAKVVLCAGKTIDLTAKEFQILRKLMVHPEHIITRDQLEEALYA 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE 218 W EE+ SNA+EV ++ LR+K+GS I+T+ G+GY +G+ Sbjct: 181 WGEEIESNAIEVFIYQLRKKIGSSSIKTIRGLGYRMGD 218 >UniRef50_A0YP32 Two-component response regulator n=1 Tax=Lyngbya sp. PCC 8106 RepID=A0YP32_9CYAN Length = 824 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 81/221 (36%), Positives = 126/221 (57%), Gaps = 4/221 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR L+IE+D IK L + G+ VD G QG + + YD ++++ LP ++G Sbjct: 1 MRFLVIENDAAQAHQIKKALIEQGYIVDVVIDGEQGWAYVEAFTYDLLLVNAHLPKLNGV 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 D+ + RE+G P+L+LT +++ + V L G DD+L KPF+ E+ AR+ AL+R Sbjct: 61 DLCQRIREQGYSVPILLLTVQNSSIDHVACLEAGIDDHLIKPFSPRELFARIRALLRSPR 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + L+ ++ LDP R T PL+L PKE++LLEL +RN RVL++ I E L++ Sbjct: 121 QANAPLLKWNSLHLDPISREVTYQQHPLSLSPKEYSLLELFLRNPKRVLTQTAILEHLWS 180 Query: 181 WDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTLG 217 ++ + + V H+ LRRKL I TV+G+GY L Sbjct: 181 FESQPNEHTVRAHIKRLRRKLKTVNADKIIETVYGVGYRLK 221 Score = 96.7 bits (241), Expect = 6e-19, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 13/134 (9%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 IL ++DD + + + L G V R E L + +ILDL +P +G ++ Sbjct: 530 ILAVDDDPVTLNRLLELLPSYGLEVTPLDDPRLFWETLEKTAPELLILDLEMPFFNGVEL 589 Query: 63 LREWR--EKGQREPVLILTARDA---LAERVEGLRLGADDYLCKPFALIEVAARL----- 112 + R P+L L+AR + + + GADDY+ KPFA E+ R+ Sbjct: 590 CQTVRTDRSWNALPILFLSARKEPQTIQDIYQ---AGADDYISKPFAEAELITRIFNRLD 646 Query: 113 EALMRRTNGQASNE 126 + R+ + Sbjct: 647 RIHLLRSLAETDPI 660 Score = 67.8 bits (166), Expect = 2e-10, Method: Composition-based stats. Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 20/162 (12%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPG-MD-G 59 R+L+I+DD+ + + ++ +D TQ + + L P D V+LDL P D G Sbjct: 404 RVLVIDDDLELTEQLQRAAINWNIQLDVITQLEKARLILQETPPDLVLLDLVFPDHQDGG 463 Query: 60 RDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 +L E + K PVL+ T RD +++R RLG + +L K + +V ++ +++ T Sbjct: 464 FVLLEELQHKFSELPVLVWTVRDDMSDRATVARLGGNAFLSKSASCDQVLTTIKDILQST 523 Query: 120 NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELL 161 ++ L + DP TL LLELL Sbjct: 524 PTASTQILAVDD---DP----VTLN-----------RLLELL 547 >UniRef50_Q49XM7 Response regulator arlR n=145 Tax=Bacteria RepID=ARLR_STAS1 Length = 220 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 125/221 (56%), Gaps = 7/221 (3%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +IL++ED+ + I+ L + VD G+ G E S YD ++LDL LP ++G + Sbjct: 3 KILIVEDEQNLARFIELELEHENYDVDIEYDGKPGLEKALSNTYDLILLDLMLPNINGLE 62 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 I R+ R + Q P++I+TA+ ++V GL GADDY+ KPF + E+ AR+ A++RR Sbjct: 63 ICRQIR-QNQTTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAMLRR--Q 119 Query: 122 QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTW 181 N + +++D T+ G+PL L E+ LL LL+ N VL R+ I ++ + Sbjct: 120 PQKNLIDIKGIIIDKDAFKVTVDGQPLDLTKTEYDLLFLLVENRNHVLQREQIITDVWGY 179 Query: 182 DEEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTLGE 218 D EV +N V+V++ +LR KL I TV G+GY + + Sbjct: 180 DTEVETNVVDVYIRYLRNKLKPFGKDKCIETVRGVGYVVRQ 220 >UniRef50_C0VPI8 Two-component response regulator n=4 Tax=Acinetobacter RepID=C0VPI8_9GAMM Length = 219 Score = 299 bits (768), Expect = 3e-80, Method: Composition-based stats. Identities = 87/219 (39%), Positives = 135/219 (61%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL EDD + IK L G+SVDW +G A+ YD V+LD LP G Sbjct: 1 MRILLAEDDASQAESIKDWLEMDGYSVDWVERGDHAILAVEQHQYDCVLLDRGLPKASGD 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 IL+ R++ + PV+ +TA+D + +RVEGL LGA+DYL KPF L E++AR+ + +R+ Sbjct: 61 QILKSIRQRNLKTPVIFITAKDHIHDRVEGLDLGANDYLVKPFNLEELSARVRSQLRQHQ 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 A L+ ++ LDP + + A + + L KEF +L LM+ + +R+ +EE LY Sbjct: 121 VDAGQYLKFADLKLDPQAKTLSQAEQTVNLTAKEFQILYKLMQKPDHIFTREQLEESLYA 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK 219 W +E+ SNA+EV ++ +R+K+G +I+TV G+GY + ++ Sbjct: 181 WGDEIESNAIEVFIYQIRKKIGGQYIKTVRGLGYRMHQE 219 >UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 Length = 245 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 78/230 (33%), Positives = 115/230 (50%), Gaps = 14/230 (6%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 IL++EDD I I+ L + F+ G G D ++LDL LP +DG ++ Sbjct: 14 ILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGLEV 73 Query: 63 LREWREK-GQREP-VLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 R++ G ++P +L+LTA+ +R+ GL GADDYL KPF+ E+ AR+ AL+RR Sbjct: 74 CTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLRRQL 133 Query: 121 GQASNE---LRHGNVMLDPGKRIATL----AGEPLTLKPKEFALLELLMRNAGRVLSRKL 173 Q R + +D + A+ E L L EF LL M GRV +R Sbjct: 134 RQGQPVGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPGRVWNRTQ 193 Query: 174 IEEKLYTWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218 + EKL+ D V+ H+ LR+K+ D FI+TV G+GY + Sbjct: 194 LIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKFED 243 >UniRef50_B4U9M6 Two component transcriptional regulator, winged helix family n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U9M6_HYDS0 Length = 225 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 68/221 (30%), Positives = 124/221 (56%), Gaps = 4/221 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 + L++EDD L+ + ++ G GF VD G Q + + YD +ILD+ +P +DG Sbjct: 4 KALIVEDDELLLETLEKGFRHEGFEVDIAKDGFQALQKAKTNSYDIIILDVVIPKIDGVK 63 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + ++ R + P+++LTA+ L +++EGL GADDY+ KPF+ E+ R++ ++RR N Sbjct: 64 VCKQLRLQS-EIPIIMLTAKSQLEDKLEGLEAGADDYITKPFSFKELIMRVKTVLRRYNK 122 Query: 122 QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTW 181 ++ ++ +D G+ + L PKEF LL++L +N + + R+++ K++ Sbjct: 123 VQEEKIVLKDLTMDLKDFKVFYKGKAINLTPKEFELLKVLAQNPNKTIRREVLLNKVWGI 182 Query: 182 DEEVTSNAVEVHVHHLRRKLG---SDFIRTVHGIGYTLGEK 219 + SN V+V++ ++R KL I T+ G GY L + Sbjct: 183 ASDYDSNIVDVYIKNIRNKLEDKPPKLILTIRGRGYMLSTE 223 >UniRef50_Q6FA81 Putative two-component response regulator n=1 Tax=Acinetobacter sp. ADP1 RepID=Q6FA81_ACIAD Length = 218 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 86/218 (39%), Positives = 138/218 (63%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL+ EDD+ + IK+ L G+ VDW +G A+ YD ++LD LP G Sbjct: 1 MRILIAEDDISQAESIKSWLELDGYVVDWVDRGDYAIAAIKQHDYDCILLDRGLPKSSGD 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L R+ PV+++TARD++++RV GL LGA+DYL KPF+L E++AR+ + +R Sbjct: 61 QVLLTLRKHQSMTPVIMITARDSISDRVTGLDLGANDYLVKPFSLEELSARIRSHIRSMQ 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 Q + L N+ L+ + L+GE + L KEF +L +M+N RV++R+ +E LY Sbjct: 121 QQVDSLLCWKNIELNTQDKWVKLSGELVELTAKEFKVLHKMMQNPERVVTREQLESTLYA 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE 218 W +E+ SNA+EV ++ LR+K+G+++I+T+ G+GY + E Sbjct: 181 WGDEIESNAIEVFIYQLRKKIGTNYIKTIRGLGYRMSE 218 >UniRef50_C8PY86 DNA-binding response regulator n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PY86_9GAMM Length = 222 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 82/219 (37%), Positives = 129/219 (58%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LL+EDD+ I D + L + ++VDW GR+ L YD ++LDL LP +DG Sbjct: 1 MRVLLVEDDVFIADSLIDSLEEEAYAVDWAKDGREAILTLKVEAYDVILLDLGLPEIDGM 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L R PVL+LTARD + +RV+GL GADDY+ KPFA+ E+ AR+ L+RR+ Sbjct: 61 SVLETLRSAKIDTPVLVLTARDQIKDRVKGLDAGADDYMTKPFAMSELLARMRVLVRRSQ 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G + N L+ G++ LD + G + + KE+ LL M +V S+ +E +Y Sbjct: 121 GNSHNTLQVGDLTLDINVKRLKRDGIEIDITAKEYMLLTTFMNAPDKVFSKSELENSIYN 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK 219 W+ + SNA+E ++ LR+K+G I+ + G+G+ + + Sbjct: 181 WEAGIESNAIEFLIYGLRKKIGQKRIKNIRGLGWYISAE 219 >UniRef50_C6Q063 Two component transcriptional regulator, winged helix family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6Q063_9CLOT Length = 367 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 76/219 (34%), Positives = 123/219 (56%), Gaps = 4/219 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 + IL+++D+ I + IK GL GF + G + +ILD+ LPG++G Sbjct: 148 IHILVVDDEESIVEFIKMGLEDEGFILHTAFDGYEAISLAKELNPSIIILDIMLPGINGY 207 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++ E +K +++LTA+D + +RV+GL LGADDY+ KPF+ E+ AR+ A +R + Sbjct: 208 EVCSEI-KKWVNASIIMLTAKDDIDDRVKGLDLGADDYMIKPFSFKELLARINARLRNSL 266 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + ++ + GN L+ L L P E+ LL+ L+ N G VLS+ I EK++ Sbjct: 267 PELNDVMSIGNFYLNDKAHEIYFKNNLLELSPTEYNLLKYLLFNNGLVLSKPTILEKVWG 326 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSD---FIRTVHGIGYTL 216 +D N VEV++ +LR K+G + IRTV G+GY + Sbjct: 327 FDFNGDVNIVEVYIRYLRDKIGDNEHSIIRTVRGVGYKV 365 >UniRef50_C0Z5X8 Two-component response regulator n=143 Tax=Firmicutes RepID=C0Z5X8_BREBN Length = 251 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 130/224 (58%), Gaps = 8/224 (3%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 R+LLIED++ + I+ LS F++ G +G + +D ++LD+ LPG+DG Sbjct: 29 RVLLIEDEINMARFIELELSYESFAITVAHDGHKGLKLALQEEWDVILLDVMLPGLDGIA 88 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + ++ R + P+++LTARD++ +RV GL GADDY+ KPFA+ E+ AR+ + RR Sbjct: 89 VCQKIRSVK-KTPIIMLTARDSITDRVFGLDSGADDYIPKPFAIEELLARIRVVFRRQEE 147 Query: 122 QAS---NELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 Q + L H +++ RI T +P+ L +E+ LL M+N RVL R ++ + + Sbjct: 148 QENVPRTMLAHRGLVVQIEGRIVTKNNQPVELTKREYDLLVTFMKNINRVLPRDVLLDTV 207 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYTLGE 218 + ++ V +N V+V+V +LR K+ +I TV GIGY + + Sbjct: 208 WGFEAAVETNVVDVYVRYLRNKIDFPNEDSYISTVRGIGYVMRK 251 >UniRef50_Q2JED0 Two component transcriptional regulator, winged helix family n=72 Tax=Bacteria RepID=Q2JED0_FRASC Length = 321 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 81/223 (36%), Positives = 123/223 (55%), Gaps = 11/223 (4%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 R+L+++DD L+ + + L GF VD G + P D V+LDL LPG+DG + Sbjct: 57 RVLVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAETTPPDLVVLDLMLPGLDGIE 116 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN- 120 + R R + PV++LTAR ++R+ GL +GADDY+ KPF+ E+ R+++++RR N Sbjct: 117 VFRRLRA-HRPVPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRRANE 175 Query: 121 ---GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEK 177 G + LR G +++D R AT G PL L +EF LL L+R GR +R + E Sbjct: 176 TVPGAEAGVLRAGTLVVDAAARTATRHGVPLGLTVREFDLLAFLLRRPGRAFTRGELLEH 235 Query: 178 LYTWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYT 215 ++ W + V VH+ LR K+ D + TV G+GY Sbjct: 236 VWGWSY-GDPSTVTVHIRRLREKIEDDPTAPRMLVTVWGVGYR 277 >UniRef50_A8F5W8 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=A8F5W8_THELT Length = 263 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 126/230 (54%), Gaps = 13/230 (5%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +IL+++DD I + + L++ G+ V + + + + D I+D+ LPGMDG + Sbjct: 29 KILVVDDDPSIIELVSYNLAREGYDVLKAYDAEEALKVVGNESVDMFIVDIMLPGMDGFE 88 Query: 62 ILREWR--EKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR- 118 ++R+ R EK + PV+ L+A+ ++V GL LGADDY+ KPF++ E+ AR++A+ RR Sbjct: 89 LVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKAVFRRI 148 Query: 119 -----TNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKL 173 + ++ + +D + + + ++L P EF LL L N G+V SR + Sbjct: 149 QLSAQEREERPKKIVAKGLEIDVERYEVKVHDQKVSLTPLEFELLRFLAENEGKVFSRDV 208 Query: 174 IEEKLYTWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218 + +KL+ +D + V+VH+ LR K+ D +I TV G GY + Sbjct: 209 LLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRD 258 >UniRef50_C7IFX1 Two component transcriptional regulator, winged helix family n=5 Tax=Clostridiales RepID=C7IFX1_9CLOT Length = 217 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 77/216 (35%), Positives = 129/216 (59%), Gaps = 6/216 (2%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 IL++ED++ I + +K L +G + G + + YD +ILD+ LPG+DG ++ Sbjct: 4 ILIVEDEVAINELVKRNLQLVGHQCNSVFDGNAAVQEIQCRSYDLIILDIMLPGLDGFEV 63 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQ 122 + E+ + P + L+A++++ +R++G +GADDYL KPF ++E+ AR+EA++RRT Sbjct: 64 I----EQANKTPTIFLSAKNSMPDRIKGFSMGADDYLTKPFEMLELLARVEAVLRRTQRT 119 Query: 123 ASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTWD 182 AS GNV +D G+ + PKE+ LLE+L+ N LSR+ + E ++ +D Sbjct: 120 AS-CFEAGNVKIDFSSHQVFHNGQSVECTPKEYELLEVLVNNRNIALSRERLLELVWGYD 178 Query: 183 EEVTSNAVEVHVHHLRRKLG-SDFIRTVHGIGYTLG 217 E + V+VH+ LR+KL D I+TV+ +GY L Sbjct: 179 FEGDTRTVDVHIQKLRKKLEWEDRIKTVYKLGYRLE 214 >UniRef50_UPI0001C16C1D manR (Two component Transcriptional regulator, Winged helix family) n=2 Tax=Nostocaceae RepID=UPI0001C16C1D Length = 268 Score = 298 bits (766), Expect = 6e-80, Method: Composition-based stats. Identities = 82/224 (36%), Positives = 127/224 (56%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+ILL++D++ + D + L++ G+ VD G+ G E + YD +ILD LP G Sbjct: 33 MKILLVDDEVELTDPLGRILTREGYIVDITYNGKSGSELAQTRTYDLLILDWMLPEKTGL 92 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +I +E R +G+ PVL LTA+D L +RV+GL G DDYL KPF L E+ AR+ AL+RR++ Sbjct: 93 EICQELRRQGKNIPVLFLTAKDTLDDRVQGLDAGGDDYLVKPFELRELLARVRALLRRSS 152 Query: 121 GQA---SNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEK 177 + + +L G++ LD ++A G + L KE LL+ M N ++L+ I + Sbjct: 153 VDSYTITGKLAVGDLELDMENQVAHRQGRIIELSEKESQLLKYFMENPEQLLTHGQIMQH 212 Query: 178 LYTWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTLG 217 L+ ++ SN + + LRRK+ S I TV+G GY Sbjct: 213 LWKGEKPPESNVIAALIRLLRRKIELGGESMLIHTVYGKGYRFS 256 >UniRef50_B4RXL0 Response regulator n=2 Tax=Gammaproteobacteria RepID=B4RXL0_ALTMD Length = 221 Score = 298 bits (766), Expect = 6e-80, Method: Composition-based stats. Identities = 94/218 (43%), Positives = 130/218 (59%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD + D + L ++VD G L D V+LDL LP DG Sbjct: 1 MRILLVEDDRPLSDALALSLKNANYAVDCVYTGADAMTTLSIGQTDIVVLDLGLPDTDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++L+ R+K PVLILTARD +++++ GL GADDYL KPF + E+ ARL L RR Sbjct: 61 NVLKSIRKKNATLPVLILTARDKVSDKISGLDAGADDYLPKPFEIDELLARLRVLERRLG 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + + NV LD T+ E + L +E +L+ L+ NAGRVLS+ +E KLY Sbjct: 121 TASQTIITIKNVSLDTAHHTLTIDNETIHLPRRELMVLKALVENAGRVLSKNQLENKLYE 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE 218 W EEV SN +EVHV HLR+K+ +FI+T+ G+GY + + Sbjct: 181 WGEEVASNTIEVHVSHLRKKMPDNFIKTIRGVGYCISK 218 >UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z5U8_BREBN Length = 261 Score = 298 bits (766), Expect = 7e-80, Method: Composition-based stats. Identities = 79/227 (34%), Positives = 127/227 (55%), Gaps = 11/227 (4%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M++L+ +DD + + I+ K + T GR+ E + D VILD+ +P +DG Sbjct: 33 MKVLVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVMMPQLDGF 92 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + RE R+K P+++LTA+D +RV GL LGADDY+ KPF+ E+ AR+ A+MRR Sbjct: 93 EACREIRKK-WDTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMRRLQ 151 Query: 121 GQAS-------NELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKL 173 + + +D KR +AGE ++ +PKEF LL L+++ G V SR+ Sbjct: 152 PKPKVEDEAALRTFVFEQLTIDLDKREVIVAGEKVSFRPKEFDLLVQLVKSPGSVWSREQ 211 Query: 174 IEEKLYTWDEEVTSNAVEVHVHHLRRKLGS---DFIRTVHGIGYTLG 217 + E+++ +D ++VH+ +R++L D I+TV GIGY G Sbjct: 212 LLEQVWGFDYFGDVRTIDVHIKKIRQRLDKLPYDCIQTVWGIGYKFG 258 >UniRef50_Q1LCD6 Two component transcriptional regulator, winged helix family n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LCD6_RALME Length = 225 Score = 298 bits (765), Expect = 8e-80, Method: Composition-based stats. Identities = 85/221 (38%), Positives = 124/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL++DD + GL + G+ V+ A + +ILD LPG G Sbjct: 1 MRILLVDDDQKAARLLARGLQEEGYDVETAHSVDVA-AAHNCYAFSLLILDWMLPGKSGV 59 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + RE RE+G R P+L+LTARDA+ +R+ GL GADDYL KPF E+ A + AL+RR Sbjct: 60 EFCRELREQGVRTPILMLTARDAINDRITGLDTGADDYLTKPFVFEELLAHVRALLRRVE 119 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + ++++DP R T AG L L PKE+A+L LL+ +AG ++SR + E ++ Sbjct: 120 LAQPAPITLNDLVIDPQTRGVTRAGARLDLTPKEYAILILLVTHAGEIVSRAQLAEHIWH 179 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYTLG 217 D N ++VH+ +LRRKL I+TV G G+ + Sbjct: 180 ADLIAIDNLIDVHMKNLRRKLDPPGMAALIQTVRGQGFRIS 220 >UniRef50_C8WKQ8 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=C8WKQ8_EGGLE Length = 237 Score = 298 bits (765), Expect = 8e-80, Method: Composition-based stats. Identities = 79/220 (35%), Positives = 122/220 (55%), Gaps = 4/220 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M++L++EDD+ + + L++ G+ D G G YD +ILD+ LP MDG Sbjct: 1 MQVLIVEDDVRLAQALAHILAENGYQTDVVHDGASGLAYAECGDYDVIILDVMLPKMDGF 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 ++ + R K PVL+LTARDA+ +++ GL GADDY+ KPFA E+ A L AL RR Sbjct: 61 AVVAQLRRKSISVPVLLLTARDAVPDKITGLDSGADDYMTKPFAPAELLAHLRALTRRQG 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 +L G+++L+ + + L KEF+L ++LM NAG+V+S+ ++ K++ Sbjct: 121 EVLFEKLAAGDLVLNLESYDLACGSKSIHLSYKEFSLAKVLMANAGQVVSKDMLIAKVWG 180 Query: 181 WDEEVTSNAVEVHVHHLRRK---LGSD-FIRTVHGIGYTL 216 + N VE +V LR+K LGS I T+ GY Sbjct: 181 VESSAEDNNVEAYVSFLRKKMKFLGSTARIETLRRAGYRF 220 >UniRef50_A9H3V0 Two component Transcriptional regulator n=96 Tax=Proteobacteria RepID=A9H3V0_GLUDA Length = 258 Score = 298 bits (765), Expect = 9e-80, Method: Composition-based stats. Identities = 88/220 (40%), Positives = 125/220 (56%), Gaps = 4/220 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 R+LL+EDD I + L GF V G G A S +D +I+D LP MDG Sbjct: 36 RVLLVEDDGKIAQEVAEELESRGFRVSRAETGPDGLSAGISGLFDVMIVDRMLPEMDGLT 95 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 ++ R + PVL+L+A A+ +RV GL+ G DDYL KPFA+ E+AAR+EALMRR N Sbjct: 96 LIESLRGRQVSTPVLVLSALSAVDDRVSGLKAGGDDYLTKPFAMEELAARIEALMRRPNN 155 Query: 122 QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTW 181 L G + +D +R T GEP+ L P+EF LLE LMR +VL+R ++ E ++ + Sbjct: 156 TRETMLHVGPLSMDLIERTVTRDGEPIDLLPREFRLLEYLMRRPNQVLTRTMLLEDVWNY 215 Query: 182 DEEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTLG 217 +N V+VH+ LRRK+ I+++ G G+ L Sbjct: 216 RFIPQTNLVDVHIGKLRRKIDDPGAQPLIQSIRGTGFMLR 255 >UniRef50_UPI00016C506D two component transcriptional regulator, winged helix family protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C506D Length = 230 Score = 298 bits (765), Expect = 9e-80, Method: Composition-based stats. Identities = 87/219 (39%), Positives = 126/219 (57%), Gaps = 5/219 (2%) Query: 4 LLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDIL 63 LL+ED + ++ G+ + GF+VD T G + S YD V+LD+ LP +DG +L Sbjct: 2 LLVEDHQPLAKALRQGMEEEGFAVDVATDGEEADVKCRSTAYDVVVLDVMLPKVDGLSLL 61 Query: 64 REWREKGQREPVLILTARDALAERVEGLRLGADDYLCKP-FALIEVAARLEALMRRTNGQ 122 + WR G VL+LTA+ A++V GL GADDYL K L E+ AR+ AL+RR + Q Sbjct: 62 KRWRASGVNTHVLMLTAKSETADKVTGLDTGADDYLSKANLDLEELFARIRALIRRGHQQ 121 Query: 123 ASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTWD 182 LR ++ +D R AG + L P+E+ALLE L + G+V++R +I E LY Sbjct: 122 KDPVLRCYDLEIDTAARTVRRAGRSIHLTPREYALLEFLAFHRGKVVTRSMIWEHLYDEY 181 Query: 183 EEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTLG 217 +E TSN V+V++ +LR K+ +F I T G GY L Sbjct: 182 DENTSNVVDVYIRYLRNKVDKEFDPQLILTRWGEGYMLR 220 >UniRef50_B8CXQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8CXQ9_HALOH Length = 227 Score = 298 bits (765), Expect = 9e-80, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 125/223 (56%), Gaps = 8/223 (3%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +IL+++D+ I +K L K FS++ + G++ + D +ILDL LP + G + Sbjct: 4 KILVVDDEKKIRKVLKAFLEKHDFSIEMASDGKEALSKVNEFNPDLIILDLMLPEISGEE 63 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + ++ R+ + P+L+LTA+ ++V G GADDYL KPF+L E+ AR++A++RR+N Sbjct: 64 VCQKIRQDK-QTPILMLTAKGTEEDKVNGFAYGADDYLVKPFSLRELLARIKAILRRSNQ 122 Query: 122 QASN----ELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEK 177 +A + G + + P + + G L EF +L L+RN G+V +R+ + +K Sbjct: 123 KAEKAEIFVYQDGRLKIHPNRMKVLVNGRDADLTRTEFNILVTLIRNPGQVFTREQLAKK 182 Query: 178 LYTWDEEVTSNAVEVHVHHLRRKL---GSDFIRTVHGIGYTLG 217 + + + ++ H+ ++R+KL + I TV+G+GY Sbjct: 183 VMGLEYKGYDRTIDAHIKNIRKKLNLEKNQLIITVYGVGYKFE 225 >UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Tax=Bacteria RepID=WALR_STAA1 Length = 233 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 72/229 (31%), Positives = 127/229 (55%), Gaps = 13/229 (5%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 ++++++D+ I D ++ L K G+ V G + +Y D V+LD+ LPG DG + Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + RE R+K P+++LTA+D+ ++V GL LGADDY+ KPF+ E+ AR++A +RR Sbjct: 64 VCREVRKK-YEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122 Query: 122 QAS-------NELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLI 174 Q + NE+ ++++ P GE + L +EF L L ++ G+V++R+ + Sbjct: 123 QPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 182 Query: 175 EEKLYTWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218 + ++ +D V+V + LR K+ D +I T G+GY L + Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQ 231 >UniRef50_Q2T1W7 DNA-binding response regulator n=22 Tax=Proteobacteria RepID=Q2T1W7_BURTA Length = 272 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 89/223 (39%), Positives = 123/223 (55%), Gaps = 7/223 (3%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 R+L IEDD + + I L GF+VDW GR G S YD + LD LPG+DG Sbjct: 50 RVLTIEDDEITANEIVGELKSRGFTVDWVANGRDGMARAISDDYDVITLDRMLPGVDGLT 109 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 IL R G R PVL+L+A + ERV GLR G DDYL KPF E+ ARLE L+RR+ Sbjct: 110 ILTTMRSIGVRTPVLMLSALGDVDERVRGLRAGGDDYLTKPFDTEEMTARLEVLLRRSQA 169 Query: 122 QASN---ELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 + L G + LD R G + L P E+ +LE +MR+AG+ ++R ++ E + Sbjct: 170 SPAPFETTLAVGPLTLDLISRKVYRDGAEIALLPTEYRVLEFMMRHAGQTITRMMLFEAV 229 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTLG 217 + + + +N ++VH+ LR+K+ IRTV G GY L Sbjct: 230 WGYHFDPGTNLIDVHMGRLRKKIDPPDATPMIRTVRGAGYILS 272 >UniRef50_A9BP99 Two component transcriptional regulator, winged helix family n=60 Tax=Proteobacteria RepID=A9BP99_DELAS Length = 262 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 91/224 (40%), Positives = 133/224 (59%), Gaps = 6/224 (2%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLP-GMDGR 60 R L+IEDD L I GL + G V + G QG +D +ILD LP G DG Sbjct: 31 RYLIIEDDALNARYIAEGLRQQGAQVAVCSDGVQGIAMAVGESWDVIILDRMLPNGFDGL 90 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 IL+ R G++ PVL+L+A A ERV GL+ G DDYL KPFA E++ARLEAL+RR Sbjct: 91 QILQTLRSMGKQTPVLVLSALSATDERVRGLKAGCDDYLTKPFAFSELSARLEALVRRAQ 150 Query: 121 GQASN-ELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 A E+R ++ L+ R A AG+PL L+P+EF LL LM++A ++++R ++ E ++ Sbjct: 151 IPAPAREMRLADLRLNLLTRSAERAGQPLALQPREFRLLAFLMQHAHQIVTRTMLLESVW 210 Query: 180 TWDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYTLGEK 219 + + +N ++VH+ LR K+ I TV G+GY+L ++ Sbjct: 211 DYRFDPQTNVIDVHISRLRGKVDKGFEPALIHTVRGVGYSLSDR 254 >UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bacteria RepID=REGX3_MYCS2 Length = 228 Score = 297 bits (763), Expect = 1e-79, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 126/225 (56%), Gaps = 11/225 (4%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 +L++ED+ + D + L K GF G + D V+LDL LPGM G D+ Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSGTDV 63 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQ 122 ++ R + PV+++TARD+ ++V GL LGADDY+ KP++ E+ AR+ A++RR Sbjct: 64 CKQLRARS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADN 122 Query: 123 ASN-----ELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEK 177 L G V +D + + ++ GEP+TL KEF LLE LMRN+GRVL+R + ++ Sbjct: 123 DDAGADDGVLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRGQLIDR 182 Query: 178 LYTWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLG 217 ++ D + ++VHV LR K+ D + TV G+GY L Sbjct: 183 VWGADYVGDTKTLDVHVKRLRSKIEEDPANPVHLVTVRGLGYKLE 227 >UniRef50_Q2BR69 Two component Transcriptional regulator, Winged helix family protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BR69_9GAMM Length = 219 Score = 297 bits (763), Expect = 1e-79, Method: Composition-based stats. Identities = 98/219 (44%), Positives = 138/219 (63%), Gaps = 2/219 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M +LL+EDD L+G I+ L + + VDW G + + D +ILDL LP +DG Sbjct: 3 MHVLLVEDDPLLGQVIEIKLQERQYQVDWIQSGSAVLSTVRNLHPDIIILDLNLPDIDGL 62 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +IL+ R + PVLILTAR A+ ERV GL LGADDYL KPF + E+ ARL A+ RR + Sbjct: 63 EILKRLRAENISTPVLILTARHAVEERVNGLDLGADDYLTKPFEMDELEARLRAVQRRLH 122 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G++ E+ G++ +D R G P+ +EF LL LL+ N GRV++R IE L Sbjct: 123 GRSKEEITFGDIKIDSAARQVFFKGSPIEASRREFDLLVLLLNNTGRVMTRAKIEATL-- 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK 219 + ++V SNA+EVH+H+LR+KLG + I TV G+GY + E+ Sbjct: 181 YADDVESNALEVHIHNLRKKLGKELISTVRGVGYYVAER 219 >UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4272B Length = 231 Score = 297 bits (763), Expect = 1e-79, Method: Composition-based stats. Identities = 73/225 (32%), Positives = 123/225 (54%), Gaps = 8/225 (3%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +IL+++D+ + + I+ LSK G+++ G++ + + + +ILD+ +P MDG + Sbjct: 4 KILIVDDEWNMRNLIRIHLSKQGYNIVEAVNGKEALKEMKCHSFQLIILDVMMPEMDGWE 63 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT-- 119 + E R++ P+L+LTAR ++V+GL +GADDYL KPF E+ AR+ AL+RR Sbjct: 64 VCEEIRKENLALPILMLTARTETTDKVKGLDIGADDYLTKPFKPEELIARVNALLRRAVV 123 Query: 120 -NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 + +L + +D + P+ L PKEF LL+LL+ N +V +R + K+ Sbjct: 124 NQTTQTKQLHFHELKMDVDDHKVFVQDNPVHLTPKEFELLKLLLLNPKQVFNRDQLLLKI 183 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218 + D V+ H+ +R KL + I TV G+GY L E Sbjct: 184 WGVDFLGDERTVDSHIKSIRLKLKKEGLSFTIIETVWGVGYKLKE 228 >UniRef50_Q0I8A9 DNA-binding response regulator n=13 Tax=Cyanobacteria RepID=Q0I8A9_SYNS3 Length = 250 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 77/233 (33%), Positives = 123/233 (52%), Gaps = 14/233 (6%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAP-YDAVILDLTLPGMDG 59 +RILL++D++ + + ++ L G+ V+ + G G S P D ++LD LP G Sbjct: 12 IRILLVDDEVHLTELLRLELDVEGYEVEVASDGASGLIKARSQPEPDLIVLDWNLPDFSG 71 Query: 60 RDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 DI + R G P+L+LT D +A+RV+ L G DDYL KPF++ E+ ARL A+ RR Sbjct: 72 VDICQRIRSSGVTTPILMLTGHDDIADRVKALDAGVDDYLVKPFSIEELMARLRAMQRRA 131 Query: 120 NG---------QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLS 170 G S L G + ++ R +G+ + L KE+ LL LMR G+VL Sbjct: 132 QGFTGSAQGNDADSTFLSVGGLTINTETRDVHRSGQKIQLSVKEYELLCFLMRGNGKVLE 191 Query: 171 RKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYTLGEK 219 R I + ++ D N ++V++ +LR+K+ I TV G+G+ L ++ Sbjct: 192 RSEIMKGVWGEDFYGDDNLLDVYIRYLRQKVENKDLPSLIHTVRGVGFILRDE 244 >UniRef50_UPI0001B559F0 two-component system, response regulator n=1 Tax=Streptomyces sp. SPB78 RepID=UPI0001B559F0 Length = 247 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 80/224 (35%), Positives = 116/224 (51%), Gaps = 9/224 (4%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 +L++EDD I + T L G++V + GR S D ++LD+ LP DG + Sbjct: 13 VLVVEDDASIRTLLTTALGAAGYTVASASDGRAAVFQAGSRRPDLIVLDVMLPDTDGFRL 72 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQ 122 RE R +G PVL LTAR + +R+ GL G DDY+ KPF + EV R+ A++RR Sbjct: 73 TRELRAQGVYTPVLFLTARAGVEDRITGLSSGGDDYVTKPFHVQEVLLRVRAILRRAGAP 132 Query: 123 AS-----NELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEK 177 AS LR+ + LD AG PL L P EF LL + + RVL + I ++ Sbjct: 133 ASTAPVRPPLRYAGLSLDESTHEVRHAGSPLRLSPTEFRLLACFLAHPERVLEKAEILQR 192 Query: 178 LYTWDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYTLG 217 ++ +D + V+ +V +LRRKL + TV G+GY L Sbjct: 193 VWRYDFSGDTRIVDTYVKNLRRKLDHGGAPALLHTVRGVGYCLR 236 >UniRef50_D1C5Q5 Two component transcriptional regulator, winged helix family n=52 Tax=Bacteria RepID=D1C5Q5_SPHTD Length = 244 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 83/227 (36%), Positives = 123/227 (54%), Gaps = 11/227 (4%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPG-MDGR 60 IL++ED+ I ++ GL G+ V G + +A+ P D +ILD+ LPG +DG Sbjct: 6 HILVVEDERAIASFLRRGLVFEGYRVTVADTGARALDAVRDDPPDLIILDIMLPGDIDGL 65 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARL------EA 114 ++ R R G+ P+L+LTARD +A+RV GL GADDYL KPFA E+ AR+ + Sbjct: 66 EVCRRIRAAGEGMPILMLTARDEVADRVAGLDAGADDYLIKPFAFEELLARVRALLRRQE 125 Query: 115 LMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLI 174 R R ++ LD R A + L +E+ LL L MR+ +VL+R +I Sbjct: 126 RRRAEEPADDGVYRFADLTLDTTSRFAYRGDRRIELTTREYELLLLFMRHPNQVLTRDVI 185 Query: 175 EEKLYTWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTLG 217 E+++ +D SN +EV+V +LRR L ++TV G GY L Sbjct: 186 MERVWGYDFPGESNVLEVYVSNLRRHLEAGGEPRLLQTVRGAGYALR 232 >UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6L0_9BACL Length = 241 Score = 296 bits (761), Expect = 2e-79, Method: Composition-based stats. Identities = 85/228 (37%), Positives = 134/228 (58%), Gaps = 13/228 (5%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 R+L+IED+ + + L+ G+ V G+ G E +D ++LDL LPGM+G + Sbjct: 4 RLLVIEDEPTLSRLLSYNLTNEGYEVIVEDHGQIGYETALRQDFDLILLDLMLPGMNGFE 63 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 I+ + R +G + PV+ILTA++A E V+GL+ GADDY+ KPF + E+ AR+ A++RR+ G Sbjct: 64 IMSKLRSEGVKTPVIILTAKNAEEEVVQGLKSGADDYITKPFGVAELLARVAAVLRRSTG 123 Query: 122 ---------QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRK 172 Q ++++ G + + P K TL GEP+TL+PKEF +L L R G V++R Sbjct: 124 KEEREKPAEQDNSQIVLGALTIYPEKYEVTLNGEPITLRPKEFEVLLYLARKPGVVMTRD 183 Query: 173 LIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYTL 216 + ++ +D V+VHV LR+KL D I ++ G+GY L Sbjct: 184 DLMNAVWGFDYIGGQRTVDVHVSSLRKKLELDPQSVHIDSIRGVGYKL 231 >UniRef50_P45606 Phosphate regulon transcriptional regulatory protein phoB n=201 Tax=Proteobacteria RepID=PHOB_SHIDY Length = 229 Score = 296 bits (761), Expect = 2e-79, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 109/225 (48%), Gaps = 7/225 (3%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RIL++ED+ I + + L + GF L D ++LD LPG G Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 Query: 62 ILREWREKG--QREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 ++ + + + PV++LTAR +RV GL GADDY+ KPF+ E+ AR++A+MRR Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 Query: 120 NGQA-SNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 + A + + LDP EPL + P EF LL M + RV SR+ + + Sbjct: 124 SPMAVEEVIEMQGLSLDPTSHRVMTGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYTLGEK 219 + + V V+VH+ LR+ L ++TV G GY + Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTR 228 >UniRef50_Q3MAE8 Response regulator receiver modulated diguanylate cyclase n=3 Tax=Cyanobacteria RepID=Q3MAE8_ANAVT Length = 684 Score = 296 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 89/222 (40%), Positives = 127/222 (57%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRILL+EDD LIG+ + L+ ++VD+ G +G YD ++LDL LP +DG Sbjct: 1 MRILLVEDDELIGELLVKSLTSQHYTVDFAKDGEEGWNFAELYTYDLILLDLILPKLDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 R+ R G + PVL+LT++D +V GL GADDY+ KPF E+ AR+ AL+RR Sbjct: 61 SFCRQLRASGNQTPVLLLTSQDTSITKVAGLDAGADDYVAKPFDFQELLARIRALLRRGG 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 L N+ LDP G+ L L PKE+ LLEL +RN+ R+ S + ++L++ Sbjct: 121 SALPPLLEWNNLRLDPSTCEVACDGKLLHLTPKEYGLLELFLRNSHRIFSCSALIDQLWS 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLG-----SDFIRTVHGIGYTLG 217 ++E T + V H+ LR+KL D I TV+GIGY L Sbjct: 181 FEEPPTEDTVRSHIKGLRQKLKAAGVVEDPIDTVYGIGYRLK 222 Score = 83.2 bits (206), Expect = 6e-15, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 2/113 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 R+++++DD I ++T LS G V + EA+ A + +IL + +P G + Sbjct: 396 RVMIVDDDPQILTALQTLLSAWGIKVYTLAHSQGFLEAMALAEPELLILKMEMPSTSGIE 455 Query: 62 ILREWRE--KGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARL 112 + + R+ + P+L LT R R + GADDY+ KP E+ R+ Sbjct: 456 LCQIARQEPQWAGLPILFLTNRHDTLTRQQIFIAGADDYISKPIVEPELIGRI 508 >UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria RepID=Q3A924_CARHZ Length = 236 Score = 296 bits (760), Expect = 3e-79, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 127/226 (56%), Gaps = 9/226 (3%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +IL+++D+ I +K+ L K G+ V GR+ + Y D ++LD +P M G + Sbjct: 4 KILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPDLIVLDWMMPEMSGIE 63 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 +LRE R+K + P+++LTA+ +++ G G DDY+ KPF+L E++AR++ +++R Sbjct: 64 VLREIRKKS-QIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKRLEA 122 Query: 122 QASN---ELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 + N L G++ L P KR L G+PL L P EF LLE ++N G+ SR + E Sbjct: 123 KTINEEIVLTEGDLTLYPHKREVFLKGKPLDLTPTEFKLLEAFLKNPGKAYSRLELLEYA 182 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGEK 219 E ++ H+ +LR+K+ D +I+TV GIGY L + Sbjct: 183 IGEAYEGYERTIDTHISNLRKKIEKDPANPEYIQTVFGIGYKLKPR 228 >UniRef50_B7H0F7 Transcriptional activator protein irlR n=7 Tax=Acinetobacter RepID=B7H0F7_ACIB3 Length = 223 Score = 296 bits (760), Expect = 3e-79, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 126/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL+IED++ I + GL + G+ + G QG E L YD +ILD+ LP ++G Sbjct: 1 MRILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVMLPDIEGW 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L+ R + + PV+ LTA+D + +RV+GL LGADDYL KPF+ IE+ AR+++L+RR Sbjct: 61 SVLQVLR-QFSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQ 119 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 NEL ++ +D G + L EF LL L+ N ++++R+ I +++ Sbjct: 120 YLQENELSISDLKMDLVGHKVWRNGNLIELSKTEFNLLRYLLVNKEQIVTRRQIGSEVWN 179 Query: 181 WDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYTLG 217 + + +N ++V V LR K+ I T+ G+GY + Sbjct: 180 INFDTDTNFIDVAVRRLRSKIDEGYEPKLIHTIRGLGYKIS 220 >UniRef50_Q6F8E2 Transcriptional regulator n=19 Tax=Acinetobacter RepID=Q6F8E2_ACIAD Length = 226 Score = 296 bits (760), Expect = 3e-79, Method: Composition-based stats. Identities = 103/223 (46%), Positives = 142/223 (63%), Gaps = 7/223 (3%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +IL+IEDD +I + T L F V+W G G L +D V+LDL LP MDG Sbjct: 3 KILIIEDDFMIAESTITLLKYHQFEVEWVNNGFDGLAHLAKQSFDLVLLDLGLPMMDGMQ 62 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 +L++ R+K PVLI++ARD L RVEGL GADDYL KP+ E+ AR+ AL+RRTN Sbjct: 63 VLKQIRQK-TGVPVLIISARDQLENRVEGLNQGADDYLIKPYEFDELLARINALLRRTNS 121 Query: 122 ------QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIE 175 Q L +G V+L+ K IAT G+ + L +E+A+L LM + ++ S+ +E Sbjct: 122 KDASSLQQDQVLSNGEVILNVEKHIATFQGKEIELSNREWAILIPLMTHPNKIFSKANLE 181 Query: 176 EKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE 218 +KLY +D EVTSN +EV++HHLR KLG +FIRT+ G+GY LG+ Sbjct: 182 DKLYDFDSEVTSNTIEVYIHHLRSKLGKNFIRTIRGLGYRLGQ 224 >UniRef50_D2SFJ3 Two component transcriptional regulator, winged helix family n=6 Tax=Actinomycetales RepID=D2SFJ3_9ACTO Length = 238 Score = 296 bits (760), Expect = 3e-79, Method: Composition-based stats. Identities = 71/219 (32%), Positives = 116/219 (52%), Gaps = 6/219 (2%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 R+L+++DD + + + L + G+ + + G + A D V+LDL LPG +G Sbjct: 17 RVLVVDDDAALAEMLGIVLRREGYEPAFVSDGNRAVGAFQQTRPDIVLLDLMLPGRNGLQ 76 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 I ++ R + P+++LTA+ + V+GL GADDY+ KPF +E+ AR+ A +RR Sbjct: 77 ICQDIRTQS-TVPIVMLTAKGDTIDVVQGLEAGADDYVTKPFKPVELVARVRAQLRRGET 135 Query: 122 QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTW 181 + L G+V +D T G P+ L P EF LL L R +V +R+L+ E+++ + Sbjct: 136 GQAENLSIGDVQIDVPAHQVTRDGVPIALTPLEFDLLVALARKPRQVFTRELLLEQVWGY 195 Query: 182 DEEVTSNAVEVHVHHLRRKLG-----SDFIRTVHGIGYT 215 + V VHV LR K+ + + TV G+GY Sbjct: 196 RHAADTRLVNVHVQRLRAKIERDPEKPEIVLTVRGVGYK 234 >UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteria RepID=Q7NMA6_GLOVI Length = 238 Score = 296 bits (760), Expect = 4e-79, Method: Composition-based stats. Identities = 81/221 (36%), Positives = 114/221 (51%), Gaps = 6/221 (2%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 IL++EDD LI + I+ L G G + D V+LD LPG+DG + Sbjct: 14 ILVVEDDPLILETIRRYLEHAGHRCHCAADGWEADRLALRHRPDLVVLDWMLPGVDGLAL 73 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQ 122 WR+ PVL+LTAR RV L GADDYL KPF+ E+ AR++AL+RR Sbjct: 74 CERWRKGEYFAPVLMLTARTEEDHRVRALAGGADDYLDKPFSAKELVARVQALLRRAYAS 133 Query: 123 ASNELRHGN-VMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTW 181 + N +++D R L G P+ L+ +EF LL L + GRV SR + E+++ + Sbjct: 134 GYRDCSPKNGLLVDRNTRQVQLHGRPIDLRAREFDLLAQLADHPGRVYSRDELLERVWGY 193 Query: 182 DEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLG 217 D E ++VHV LR KL D ++ TV G+GY Sbjct: 194 DFEGGHRTIDVHVRKLREKLEPDPTRPVYVLTVWGVGYKFA 234 >UniRef50_Q030C5 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=6 Tax=Lactococcus lactis RepID=Q030C5_LACLS Length = 234 Score = 296 bits (760), Expect = 4e-79, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 123/222 (55%), Gaps = 6/222 (2%) Query: 1 MR--ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYS-APY-DAVILDLTLPG 56 M+ IL+IED+ I + ++T LS G++V G G + Y D V+LD +P Sbjct: 13 MKRQILIIEDEESISNLLETELSFEGYNVFSAADGMSGLKIFEEKQEYLDVVLLDWMIPK 72 Query: 57 MDGRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALM 116 +DG ++LR ++ + PV+ +TARD + ++V GL GADDYL KPF + E+ ARL + Sbjct: 73 LDGLEVLRRMKKMTNKVPVIFVTARDYVGDKVAGLDAGADDYLTKPFNIEELMARLRVIF 132 Query: 117 RRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEE 176 R +G V L+PG+ + +L +EFALL L + G ++SR I E Sbjct: 133 R--KNTQPAIYSYGTVSLNPGEHTVEYQEKATSLTQREFALLLFLFEHQGEIISRDDILE 190 Query: 177 KLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE 218 +++ + N V+ +V +LR+KL + I T+ G+GY L + Sbjct: 191 EVWGMNFGGQLNTVDTYVRYLRKKLDKNMIETIRGLGYRLNK 232 >UniRef50_C1ZD82 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZD82_PLALI Length = 235 Score = 296 bits (760), Expect = 4e-79, Method: Composition-based stats. Identities = 82/220 (37%), Positives = 126/220 (57%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR L++ED + ++ L G++VD G G YD ++LD LP + G Sbjct: 1 MRALIVEDQPDLLFALRGMLEDEGYAVDTAADGESGLHRALVWEYDVIVLDWMLPRLSGF 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 D+L++ R K PVL+LTARD +A+RV+GL GADDYL KPF E+ ARL AL+RR Sbjct: 61 DLLKQLRTKK-STPVLMLTARDGVADRVQGLDQGADDYLVKPFDRGELLARLRALIRRAA 119 Query: 121 GQASNELRHG-NVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 G++ + L G V ++ R + L +E+++ E L + GRV+ R + + ++ Sbjct: 120 GESESLLELGQGVTINLIHRKVFRDDVEIVLTAREYSIFEYLALHRGRVVPRTDLYDHIF 179 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK 219 ++E SN ++VH+ +LRRKLG D I T G+GY + + Sbjct: 180 DENDESLSNLLDVHISNLRRKLGRDVIETRRGLGYIIHSQ 219 >UniRef50_Q81I47 Two-component response regulator n=76 Tax=Firmicutes RepID=Q81I47_BACCR Length = 232 Score = 296 bits (759), Expect = 4e-79, Method: Composition-based stats. Identities = 85/224 (37%), Positives = 135/224 (60%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+L++ED+ + + I L F VD G G YDA++LD+ +PGMDG Sbjct: 10 MRLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 68 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +++++ R++ PVL LTARD+L +RV+GL G DDY+ KPF E+ AR+ AL+RR+ Sbjct: 69 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 128 Query: 121 G-QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 +R+ + L + + G+ + L K++ LLE L++N+G++L R+ I ++++ Sbjct: 129 SLTTQQTIRYKGIELFGKDKDVQVDGKGMKLSLKQYELLEYLVQNSGKILMREQIFDRVW 188 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTLGEK 219 +D + T VEV+VHHLR+KL I+TV GIGY L E+ Sbjct: 189 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYILKEQ 232 >UniRef50_Q12T20 Two component transcriptional regulator, winged helix family n=11 Tax=Gammaproteobacteria RepID=Q12T20_SHEDO Length = 225 Score = 296 bits (759), Expect = 4e-79, Method: Composition-based stats. Identities = 85/223 (38%), Positives = 125/223 (56%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL+IEDD + G + + D + G++G YD ++LD LP +DG Sbjct: 1 MKILIIEDDATTQSYLVEGFAAQNIATDTASDGQEGLHLARHNSYDLIVLDRMLPKLDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L R G PVLIL+A + + ERV+GLR G DDY+ KPFA E+ R+E L +R Sbjct: 61 TLLGALRSSGNSTPVLILSALNHVDERVKGLRAGGDDYMTKPFAFAELLVRVEKLTQRNQ 120 Query: 121 G-QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 G A EL G + ++ R+ TLA L L+PKEF LL+ LM + +V+SR L+ E ++ Sbjct: 121 GIAAPAELVVGQLRMELLTRVVTLAEHELMLQPKEFQLLKYLMEHPNKVISRTLLFEAVW 180 Query: 180 TWDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYTLGE 218 + + +N ++VH+ LRRK + I TV G GY L + Sbjct: 181 DYHFDPRTNVIDVHIAKLRRKFEEIGFPEMIETVRGAGYRLSK 223 >UniRef50_P76340 Probable transcriptional regulatory protein yedW n=131 Tax=Proteobacteria RepID=YEDW_ECOLI Length = 223 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 79/220 (35%), Positives = 123/220 (55%), Gaps = 6/220 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+ILLIED+ + + GLS+ G+ +D + GR G Y +ILD+ LPGMDG Sbjct: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 IL+ R + PV+ LTARD++ +RV GL GA+DYL KPF+ E+ AR+ A +R+ + Sbjct: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 ++ L + +D + +TL KEF LL LL AG ++ R +I +++ Sbjct: 120 -ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTL 216 + + +N V+V + LR K+ F I T+ G+GY+ Sbjct: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 >UniRef50_Q3M194 Multi-component transcriptional regulator, winged helix family n=2 Tax=Nostocaceae RepID=Q3M194_ANAVT Length = 725 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 78/222 (35%), Positives = 124/222 (55%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M++L++E+D + T L F+VD + R E + YD ++LD+ LP +G Sbjct: 1 MKLLIVENDRDTAAALTTSLVAQQFTVDTASDSRSALELAEATEYDLIVLDVMLPDENGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + R+ R + Q+EP+L+LT + A+R+ G GADDY+ KP+ L E+ AR+ AL+RR + Sbjct: 61 RLCRQLRTQNQQEPILLLTRKVNPADRIAGFEAGADDYITKPYELSELLARIRALLRRGS 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + L G + LDP G+ L L PKE+ LLEL +R+ R+ R+ + +++ + Sbjct: 121 TVLTKVLCWGQLQLDPNNCEVMCQGKGLHLTPKEYKLLELFLRHPRRIFDRRTLLDRICS 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLG-----SDFIRTVHGIGYTLG 217 DE A+ + LRRKL SD I T++G+GY L Sbjct: 181 IDECPGEEAITTQIRGLRRKLQMAGLNSDPIETLYGLGYRLK 222 Score = 102 bits (256), Expect = 9e-21, Method: Composition-based stats. Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 2/113 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 R+L+++DD + ++ L GF V Q + L + D ++LD+ +PG G + Sbjct: 607 RLLIVDDDPALLSILEAQLQPWGFQVTTLADSSQFWQYLEATTPDLLLLDVAMPGFSGIE 666 Query: 62 ILREWRE--KGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARL 112 + + + + R PVL+L+A L GADDY+ KP ++ R+ Sbjct: 667 LCQVVKSDPRWSRLPVLLLSAHADADTLYRALAAGADDYILKPIVEADLIQRI 719 Score = 71.3 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 2/131 (1%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGM--DGR 60 +LLI+DD + + ++ S ++ T ++ L DA+ILDLT P G Sbjct: 483 VLLIDDDTDLIERMQANASNWSIHLETVTDLTLARQRLQYLTPDAIILDLTFPNTTESGL 542 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L + + + PVL+LT L +RVE RLGA+ +L KP EV + L+ R + Sbjct: 543 TLLAQLKHQFSTIPVLVLTGLGDLTKRVEVTRLGANAFLQKPATPTEVFQAVSQLLHRID 602 Query: 121 GQASNELRHGN 131 + L + Sbjct: 603 TINARLLIVDD 613 >UniRef50_C6D6P8 Two component transcriptional regulator, winged helix family n=17 Tax=Firmicutes RepID=C6D6P8_PAESJ Length = 238 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 123/229 (53%), Gaps = 15/229 (6%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 IL+ EDD I + I L K G+ + GR+ + + D VILD+ +P MDG ++ Sbjct: 8 ILIAEDDPDIAELIALHLGKEGYQLLKAADGREAVRLVQTNTIDLVILDIMMPHMDGYEV 67 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQ 122 +R RE+ R P++ L+A+ + +++ GL +GADDY+ KPF +E+ AR+ A +RR Sbjct: 68 VRVIREQQYRMPIIFLSAKTSDFDKISGLVMGADDYMTKPFNPMELLARVNAQLRRFRQL 127 Query: 123 ASNE---------LRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKL 173 + G + +D +R TL + + L PKEF +L LL + +V S + Sbjct: 128 NQPVAAPTHAASAIVAGGLTIDQEQRNVTLYNDRIDLTPKEFDILYLLASHPKKVFSAEH 187 Query: 174 IEEKLYTWD-EEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTL 216 I ++++ E N V VH+ LR+KLG D +I+TV G+GY Sbjct: 188 IFQQVWGEAYYESGGNTVMVHIRTLRKKLGEDKQHQQWIKTVWGVGYAF 236 >UniRef50_D1C280 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C280_SPHTD Length = 240 Score = 295 bits (758), Expect = 5e-79, Method: Composition-based stats. Identities = 82/229 (35%), Positives = 122/229 (53%), Gaps = 17/229 (7%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALY---SAPYDAVILDLTLPGMDG 59 I+++ED+ + ++ L + G V+ G E L D ++LDL LP +DG Sbjct: 4 IVVVEDERELATLVERALREEGHRVEVIRDGAAALERLTGPGQPEPDLIVLDLMLPNVDG 63 Query: 60 RDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR- 118 +I R R+ P+L+LTAR +RV GL LGADDYL KPF+L E+ AR+ A++RR Sbjct: 64 LEICRRVRQSKI-TPILMLTARSTELDRVLGLELGADDYLTKPFSLRELQARVSAILRRV 122 Query: 119 -------TNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSR 171 + + HG++ +DP R T G+P+ L KEF LL LL N GRV SR Sbjct: 123 EMMRALSRTEDGTTRIDHGDLTIDPLSREVTSRGQPVHLTAKEFDLLHLLAANPGRVFSR 182 Query: 172 KLIEEKLYTWDEEVTSNAVEVHVHHLRRKLG-----SDFIRTVHGIGYT 215 + +++ D V+ H+ LR+KLG ++ I T+ G+GY Sbjct: 183 DYLLHRVWGEDYVGVDRTVDTHILRLRKKLGGPGSPAERIVTLWGVGYK 231 >UniRef50_P30843 Transcriptional regulatory protein basR n=126 Tax=Gammaproteobacteria RepID=BASR_ECOLI Length = 222 Score = 295 bits (758), Expect = 5e-79, Method: Composition-based stats. Identities = 100/216 (46%), Positives = 137/216 (63%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL++EDD L+ G+ G++ D T R +++L + Y V+LDL LP DG Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 L R+K PVLILTARD L +++ GL +GADDYL KPFAL E+ AR+ AL+RR N Sbjct: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 Q +EL GN+ L+ G+R + GE L L PKE+ALL LM AG + R+++ +Y Sbjct: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTL 216 WD E ++N +EVH+H+LR K+G IRTV G GY L Sbjct: 181 WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML 216 >UniRef50_B9XEM3 Two component transcriptional regulator, winged helix family n=1 Tax=bacterium Ellin514 RepID=B9XEM3_9BACT Length = 226 Score = 295 bits (758), Expect = 5e-79, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 122/223 (54%), Gaps = 7/223 (3%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RIL+IED++ + +K L G+ V G +G + + + D V+LD+ +P +DG Sbjct: 3 RILIIEDEVPMRTALKDCLEGEGYRVITAADGEEGLKRVMAEKPDLVLLDVMMPKLDGFA 62 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + E R P+L+LTA+ + +RV GL GADDYL KPF+ E+ AR+ A++RR Sbjct: 63 LCAELRRLANPVPILMLTAKGQIEDRVTGLDAGADDYLVKPFSTDELLARVRAMLRRHQR 122 Query: 122 QASNE--LRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 + LR G V +D K+ A + L KE+A+L LL G +SR+ + ++ Sbjct: 123 EKRAVATLRFGEVEIDMVKQTARRGRKDLHFTAKEYAMLRLLSEAPGEPISRERFLDVVW 182 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLG 217 + T+ V+ H+ LR K+ SD +I+TVHG+GY L Sbjct: 183 GYAAFPTTRTVDNHIASLRAKIESDPEKPRWIKTVHGVGYRLE 225 >UniRef50_A9HHL1 Probable two-component response regulator transcription regulator protein n=1 Tax=Roseobacter litoralis Och 149 RepID=A9HHL1_9RHOB Length = 223 Score = 295 bits (758), Expect = 5e-79, Method: Composition-based stats. Identities = 88/223 (39%), Positives = 132/223 (59%), Gaps = 6/223 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M ILLIED+ + D ++ GL+ G+SVD G G E YD V+LDL LPG+ G+ Sbjct: 1 MNILLIEDEARVADFVRRGLAAEGWSVDHAANGEDGLELAAQNNYDVVLLDLMLPGIQGQ 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + R+ R + + P+++LTA D E+VEGL++GADDYL KPF E+ AR+EAL RR Sbjct: 61 GVCRKLRARKSKTPIMMLTALDGSEEKVEGLKIGADDYLPKPFDFDELVARIEALHRRAT 120 Query: 121 GQASNE----LRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEE 176 G ++ + +G + D + +P+ L KE LL+LL+ + GRVLSR+ I Sbjct: 121 GYTADVSDTIITNGAITFDRASLEVNVEKKPIELTKKERDLLQLLLTSNGRVLSRERILN 180 Query: 177 KLYTWDEEVTSNAVEVHVHHLRRKLGSD--FIRTVHGIGYTLG 217 ++ + + +N V+V+V LRRKLG + I T+ +GY + Sbjct: 181 TVWGLNADPLTNVVDVYVGRLRRKLGQEGQRIVTLRNVGYRMA 223 >UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 Tax=Symbiobacterium thermophilum RepID=Q67J79_SYMTH Length = 232 Score = 295 bits (758), Expect = 6e-79, Method: Composition-based stats. Identities = 85/220 (38%), Positives = 135/220 (61%), Gaps = 6/220 (2%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 +L+++D+ + + I+ L+ +V G A+ A D V+LD+ +P +DG Sbjct: 9 VLVVDDEPRMRELIRLYLAAE-CTVLEAGDGLTALRAVRDAGPDLVLLDVMMPRLDGWQT 67 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQ 122 L+ RE+ PV++LTAR +A+RV+GLR+GADDY+ KPF E+AAR++A++RR+ GQ Sbjct: 68 LQRIREES-AVPVIMLTARGGVADRVQGLRMGADDYIAKPFDGRELAARVQAVLRRSAGQ 126 Query: 123 --ASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 A+ +R G++ + P +R A AG PL L PKEF LL LL + G+V SR+ + ++++ Sbjct: 127 VEANVPIRRGSLTIRPAERTALYAGRPLPLTPKEFDLLALLAAHPGQVFSREKLLDRIWG 186 Query: 181 WDEEVTSNAVEVHVHHLRRKLGS--DFIRTVHGIGYTLGE 218 D + + V+ H+ +LR KLG I TV G+GY E Sbjct: 187 PDFQGDARTVDAHIKNLRDKLGEGAGLILTVWGVGYRFAE 226 >UniRef50_A6TT79 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiales RepID=A6TT79_ALKMQ Length = 232 Score = 295 bits (757), Expect = 7e-79, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 121/222 (54%), Gaps = 8/222 (3%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 R+L+IED+ I D IK L + G++ +D VILDL LP + G + Sbjct: 7 RVLIIEDEKNIADVIKAYLQNEKYEAIVTHNGKEAISIFQQQSFDFVILDLMLPDLSGEE 66 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 I + R + + P+L+LTA+ ++R+ GL +GADDY+ KPF+ E+ AR+ A+MRRTN Sbjct: 67 ICKRIRLQS-QVPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAIMRRTNN 125 Query: 122 QASN----ELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEK 177 + EL G++ +D E + L EF LL + ++N+G+V SR + K Sbjct: 126 EGLKAHLIELNGGDLKVDLRDMETWKKDELVELTATEFKLLSIFIQNSGKVFSRDELVVK 185 Query: 178 LYTWDEEVTSNAVEVHVHHLRRKLGSD---FIRTVHGIGYTL 216 + +D ++VH+ +LR K+ + +I TV+G+GY Sbjct: 186 VLGYDYVGYDRTIDVHIKNLRHKIECEYYKYIVTVYGVGYRF 227 >UniRef50_C7MDU8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=19 Tax=Actinobacteridae RepID=C7MDU8_BRAFD Length = 279 Score = 295 bits (757), Expect = 7e-79, Method: Composition-based stats. Identities = 86/225 (38%), Positives = 124/225 (55%), Gaps = 10/225 (4%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 R+++IED+ I I L+ G+ V G G + D V+LD+ LPG DG + Sbjct: 16 RVVVIEDEPTITRAIADRLTAEGWEVSTALDGPSGVRTVAEVRPDVVVLDVMLPGFDGLE 75 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + R + + PVL+LTARD + + GL +GADDY+ KPF++ E+ ARL+AL+RR Sbjct: 76 VCRRI-QADEPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSIRELVARLKALLRRVRR 134 Query: 122 QASN---------ELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRK 172 A L+ G++++D R AG P L P EF LL L G VL+R+ Sbjct: 135 AAPPPPSESEKQEALQIGDLVIDRAGRRVMRAGAPAHLTPTEFDLLLCLANAPGTVLTRE 194 Query: 173 LIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLG 217 + ++ W + + V+ HV LRRKLGSD +RTVHG+GY L Sbjct: 195 QLLADVWDWVDATGTRTVDSHVKALRRKLGSDLVRTVHGVGYALE 239 >UniRef50_A6W7C9 Two component transcriptional regulator, winged helix family n=37 Tax=Actinobacteridae RepID=A6W7C9_KINRD Length = 254 Score = 295 bits (757), Expect = 7e-79, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 121/226 (53%), Gaps = 14/226 (6%) Query: 5 LIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILR 64 ++ED+ I D + L G++V+ G G E D V+LD+ LPG DG ++ R Sbjct: 22 VVEDEPTIADAVARRLRAEGYTVETAGDGPSGVELCERVTPDVVVLDVMLPGFDGLEVCR 81 Query: 65 EWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQAS 124 + + PVL+LTARD +++ GL +GADDY+ KPF++ E+ AR+ L+RR + Sbjct: 82 RV-QAARPVPVLMLTARDDETDKLVGLGVGADDYMTKPFSMRELVARVNGLVRRVERARA 140 Query: 125 NE-------------LRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSR 171 + G + +D +R AG + L P EF LL L + VL+R Sbjct: 141 LVGAPAPSAEAMRFPVSDGELEIDRAQRRVRRAGTEVHLTPTEFDLLVCLAESPRTVLTR 200 Query: 172 KLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLG 217 + + E+++ W + + V+ HV LRRKLG+D +RTVHG+GY Sbjct: 201 EKLLEEVWDWADASGTRTVDSHVKALRRKLGADLVRTVHGVGYAFE 246 >UniRef50_C1ABP4 OmpR family two-component response regulator n=2 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ABP4_GEMAT Length = 231 Score = 295 bits (757), Expect = 7e-79, Method: Composition-based stats. Identities = 87/222 (39%), Positives = 125/222 (56%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MR+LL EDD + D I GL ++ F VD G YDAVILD+ +PGMDG Sbjct: 1 MRLLLAEDDPQLRDAITRGLRELAFVVDSVGDGETAFTMALVNSYDAVILDILMPGMDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 I R R + P+L+LTARDA+ ER++GL GADDYL KPF E+ AR+ AL+RR + Sbjct: 61 AICRGLRARQMAVPILLLTARDAVDERIQGLDAGADDYLTKPFHFGELTARVRALLRRMS 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + + G++ +D + A G L L +EF LL L R+AGR++SR + E ++ Sbjct: 121 VVLPSTMAVGDLEIDTRLQQARRDGALLPLTAREFTLLAYLARHAGRIVSRGELAEHVWD 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYTLGE 218 + + +N ++V+V LRRK+ + T G G L + Sbjct: 181 ENHDPNANLIDVYVSRLRRKVDGAGRRPLLHTRRGQGVLLSD 222 >UniRef50_C5CFK4 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CFK4_KOSOT Length = 226 Score = 295 bits (757), Expect = 8e-79, Method: Composition-based stats. Identities = 78/218 (35%), Positives = 128/218 (58%), Gaps = 2/218 (0%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL+++DD I + +KT + F+V R EAL + P D ++LD+ LP G Sbjct: 1 MKILVVDDDPDILNIVKTACEQECFNVRTANSARNMWEALENDPPDLIVLDIMLPDASGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT- 119 D++++ + K + PV+ LTAR + + + GL LGADDY+ KPF + AR++A+ RR Sbjct: 61 DVIKKLKRKYEEIPVIFLTARKSDLDMILGLELGADDYITKPFNPRTLIARIKAVSRRYE 120 Query: 120 -NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 + N ++ G++ +D G+ L KEF LL+L++ N G+V +R+ I +++ Sbjct: 121 MGPKDRNVVKLGDIEIDMNSYSMIKDGKKEELPRKEFELLKLMIENPGKVFNRQEILDRV 180 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTL 216 + D V+VH+ LR K+GS+FI+TV G+GY L Sbjct: 181 WGMDFFGDFRTVDVHISKLREKIGSEFIKTVRGVGYKL 218 >UniRef50_C6VUR1 Two component transcriptional regulator, winged helix family n=3 Tax=Sphingobacteriales RepID=C6VUR1_DYAFD Length = 226 Score = 295 bits (756), Expect = 8e-79, Method: Composition-based stats. Identities = 75/225 (33%), Positives = 123/225 (54%), Gaps = 6/225 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL++EDD IG + GL+++G+ V+W G + + +D ILD+ LP +DG Sbjct: 1 MKILVVEDDERIGSFLTKGLAEVGYFVEWAQDGAMARTLIQDGSWDLFILDVMLPDIDGF 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + + R K PVLIL+A ++++ L LGADDYL KP E+ +R+ AL RR + Sbjct: 61 QLTQLIRYKKIDTPVLILSALGEADDKIKALDLGADDYLTKPIHFPELLSRINALRRRYD 120 Query: 121 GQ--ASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 N L ++ ++ + AG+ + L KEF L LM N +VL+R I + + Sbjct: 121 MHYSKDNVLVCADLEVNLDTHLVQRAGKEIVLSAKEFRFLVYLMENQNKVLTRSQILQVV 180 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYTLGEK 219 ++ + + +N V+V++ +LR K+ IRTV G GY + + Sbjct: 181 WSTNMDTYTNVVDVYISYLRNKIDVDFPDKLIRTVKGTGYMIASQ 225 >UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C0WUJ3_LACBU Length = 242 Score = 295 bits (756), Expect = 8e-79, Method: Composition-based stats. Identities = 71/233 (30%), Positives = 126/233 (54%), Gaps = 17/233 (7%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 ++L+++D+ I ++ L + F V T G + + YD V+LDL LP M G + Sbjct: 3 KVLVVDDEPAIVTLLEYNLKQASFDVQNATNGADALSMIENNHYDIVLLDLMLPEMSGEE 62 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR--- 118 +L+ R PV++LTA+D ++V GL +GADDY+ KPF+ EV AR+ A++RR Sbjct: 63 VLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRYEK 122 Query: 119 ---TNGQASNELRHGNVM------LDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVL 169 +N Q + ++ G++ +D + ++ + L L PKEF L++ L+ + +VL Sbjct: 123 SEPSNQQNAAPIKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHENQVL 182 Query: 170 SRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLG-----SDFIRTVHGIGYTLG 217 SR + + ++ +D S V++ + HLR K+ +++T+ G GY Sbjct: 183 SRDQLLQGVWGFDYSGQSRMVDIQIAHLREKIELDPKRPKYLKTIRGFGYEFS 235 >UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Actinobacteria (class) RepID=REGX3_MYCBO Length = 227 Score = 295 bits (756), Expect = 8e-79, Method: Composition-based stats. Identities = 83/224 (37%), Positives = 128/224 (57%), Gaps = 10/224 (4%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 +L++ED+ + D + L K GF T G A D V+LDL LPGM G D+ Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDV 63 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQ 122 ++ R + PV+++TARD+ ++V GL LGADDY+ KP++ E+ AR+ A++RR Sbjct: 64 CKQLRARS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122 Query: 123 ASN----ELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 S L G V +D + + ++ G+ +TL KEF LLE LMRN+GRVL+R + +++ Sbjct: 123 DSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLG 217 + D + ++VHV LR K+ +D + TV G+GY L Sbjct: 183 WGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 226 >UniRef50_C0Z6J5 Two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z6J5_BREBN Length = 231 Score = 295 bits (756), Expect = 9e-79, Method: Composition-based stats. Identities = 82/222 (36%), Positives = 116/222 (52%), Gaps = 6/222 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M ILL+EDD +G I+ LS+ +V+W E + YD ILD + G Sbjct: 1 MHILLVEDDPKLGPLIRYKLSQEYHTVEWVADPELVMEYVQQTYYDLYILDWMMQKKSGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR-- 118 ++ E R + P+L+LTARDA+ +RV GL GADDYL KPFA E+ AR+ AL RR Sbjct: 61 ELCEEIRASNDQTPILMLTARDAIDDRVTGLNRGADDYLIKPFAFEELFARIHALTRRIP 120 Query: 119 TNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 + + + LD G+ LTL KEF LL+ +R+ +VL+R I + Sbjct: 121 VSMHQEQTCEYAGITLDRLTHEVYREGQLLTLTKKEFQLLDFFLRHTEKVLTRDQIVNYV 180 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTL 216 + D +T NAV+ + LR+K+ F I V G+GY L Sbjct: 181 WGLDATITPNAVDAAIKLLRKKVDEGFSHKLIHNVRGVGYRL 222 >UniRef50_A1V147 DNA-binding response regulator n=182 Tax=cellular organisms RepID=A1V147_BURMS Length = 283 Score = 295 bits (756), Expect = 9e-79, Method: Composition-based stats. Identities = 112/217 (51%), Positives = 148/217 (68%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 ILL+EDD +I +G++ L G +VDW G AL YD ++LDL LP DG D+ Sbjct: 66 ILLVEDDRMIAEGVRKALKADGCAVDWVQDGDAALTALGGEAYDLLLLDLGLPKRDGIDV 125 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQ 122 LR R +G PVLILTARDA+A+RV+GL GADDYL KPF L E+AAR+ AL+RR +G+ Sbjct: 126 LRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRRQSGR 185 Query: 123 ASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTWD 182 + + +RHG + LDP TL G P+ L +EFALLE L+ G VLS+ +EEK+Y W Sbjct: 186 SESMIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYGWG 245 Query: 183 EEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK 219 EE+ SN VEV++H LR+KLGSD IR V G+GY + ++ Sbjct: 246 EEIGSNTVEVYIHALRKKLGSDLIRNVRGLGYMVVKE 282 >UniRef50_A9BQG9 Two component transcriptional regulator, winged helix family n=11 Tax=Proteobacteria RepID=A9BQG9_DELAS Length = 253 Score = 295 bits (756), Expect = 9e-79, Method: Composition-based stats. Identities = 106/227 (46%), Positives = 144/227 (63%), Gaps = 11/227 (4%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL++ED+ I G++ L + ++VD T + AL +DAV+LDL LP DG Sbjct: 22 MRILVVEDNAGIAAGLQANLEQRRYAVDVCTTVAEAWHALEMERFDAVLLDLGLPDGDGS 81 Query: 61 DILREWREK-----------GQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVA 109 +ILR R PVLILTARD + ER+ GL LGADDYL KPF + E+ Sbjct: 82 EILRRLRGPRRPGGDSQALPDPNTPVLILTARDQVRERIAGLDLGADDYLVKPFDIDELE 141 Query: 110 ARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVL 169 ARL A++RR GQA+ +RHG + +DP R G+ + + P+EF++L +L++ GRVL Sbjct: 142 ARLRAMLRRAGGQAAPVIRHGELEVDPAARTVRRDGKLVEMSPREFSVLWVLLQARGRVL 201 Query: 170 SRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTL 216 SR+ IEE LY+W V SNAVEVH+HHLR+KLG+ I T+ G+GY L Sbjct: 202 SRQQIEEHLYSWGTAVESNAVEVHIHHLRKKLGNASIVTMRGVGYFL 248 >UniRef50_Q02A31 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q02A31_SOLUE Length = 231 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 127/226 (56%), Gaps = 8/226 (3%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RILL EDD + + L G++V+ G YD ++LD+ LP G D Sbjct: 4 RILLAEDDPGLVLTLTDRLQNEGYAVESRQDGDSALAEAMGQSYDLILLDVMLPRRSGFD 63 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + ++ RE P+L+LTAR + ++V GL+ GADDYL KPF ++E+ AR+EAL+RR Sbjct: 64 VCKKLRESEIGVPILMLTARGEVVDKVVGLKSGADDYLTKPFEMMELLARIEALLRRAPV 123 Query: 122 QAS---NELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 + S + G + +D + T AG+P+TL +E+ LL L+ + G ++R+ + ++ Sbjct: 124 RRSLNAGTFQLGGIAVDFRRAEVTRAGKPVTLSAREYRLLGYLIDHCGETVTREDLLTQV 183 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGEK 219 + + + V+VHV LR+KL + +++TV G+GY L ++ Sbjct: 184 WGYSATTDTRTVDVHVAWLRQKLEENPKYPRYLQTVRGLGYKLSDE 229 >UniRef50_B4B5Q6 Response regulator receiver modulated diguanylate cyclase n=1 Tax=Cyanothece sp. PCC 7822 RepID=B4B5Q6_9CHRO Length = 813 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 120/229 (52%), Gaps = 11/229 (4%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M+IL IEDD + + L K + V+ T G G + ++ YD ++LD LP + G Sbjct: 1 MKILCIEDDESLAKLLYQILVKQHYEVEIATDGETGWNLVTTSAYDLILLDWMLPKLTGI 60 Query: 61 DILREWR-------EKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLE 113 ++ + R + Q P+L++T D +V GL GADDYL KP E+ AR+ Sbjct: 61 ELCEKLRTRNGLIPSQNQDTPILLMTGLDTTTSKVMGLDAGADDYLVKPLDFEELLARIR 120 Query: 114 ALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKL 173 AL+RR +G+ + L+ G + L P T + + L KE+ LLEL +RN ++ S Sbjct: 121 ALLRRKSGERAPMLKWGQLCLCPNSGQVTYLEQKIQLAQKEYKLLELFLRNPEQIFSLSR 180 Query: 174 IEEKLYTWDEEVTSNAVEVHVHHLRRKLG----SDFIRTVHGIGYTLGE 218 + + L++ ++ T AV H+ LR+KL D + T++ +GY L + Sbjct: 181 LVDSLWSIEKTPTEGAVRAHIKGLRQKLKQAGVPDPLETIYKMGYRLKK 229 Score = 67.8 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 75/184 (40%), Gaps = 29/184 (15%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPG----- 56 +IL+++DD + + T L+ G+ + ++ +Q E L + D +ILD+ Sbjct: 506 KILIVDDDSSLLKLLSTLLTPSGYQLTLLSEPQQFWEILEQSEPDLLILDIKFSKPASSD 565 Query: 57 --------MDGRDILREWRE--KGQREPVLILTARDALAERVEGLRLGADDYLCKPFALI 106 +G ++ + R + R PV++L+ L G GADD+L KP Sbjct: 566 QEKERSSFFNGIELCQVIRNDLRWNRLPVILLSVHTDLETVQRGFMAGADDFLSKPVVAS 625 Query: 107 EVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLT-LKPKEFALLELLMRNA 165 E+ R+ + +++ + + + +L + L L A+ L + Sbjct: 626 ELLIRVRSRLKQRKMWK--IIEYDELT------GVSLRRKALEDLTR---AI--HLAQRQ 672 Query: 166 GRVL 169 G+ Sbjct: 673 GQPF 676 Score = 51.6 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 8/132 (6%) Query: 3 ILLIEDDMLIGDGI-KTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTL----PGM 57 +L++E DM + + K L+ G T + ++ L S + ++LDL P Sbjct: 382 LLILESDMTLRQLLVKEALTW-GIETQVATTLDEAEKLLNSGQCNVMLLDLNFYDSEP-- 438 Query: 58 DGRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMR 117 G L + P +ILTA ++ +R+E R G +L KP ++ A + +R Sbjct: 439 TGLQFLATLNRQHPSLPAIILTAEESFEKRIEAARWGNHYFLVKPVVPSQILAVVTQTLR 498 Query: 118 RTNGQASNELRH 129 + + ++ L Sbjct: 499 QASESSAKILIV 510 >UniRef50_C9ZA01 Putative two-component system response regulator n=1 Tax=Streptomyces scabiei 87.22 RepID=C9ZA01_STRSW Length = 248 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 116/222 (52%), Gaps = 8/222 (3%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 +L++EDD I + + L G+SV G+ D ++LD+ LP +DG + Sbjct: 15 VLVVEDDPSIRTLLTSALHAAGYSVSTADTGQTAMFEAGRGQPDLIVLDVGLPDIDGFAV 74 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR---- 118 R R +G PVL LTAR + +R+ GL G DDY+ KPF + EV R+ A++RR Sbjct: 75 TRHLRAEGVYTPVLFLTARTDVEDRIIGLSSGGDDYVTKPFHVQEVLLRIRAILRRSDMP 134 Query: 119 -TNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEK 177 + G LR+ ++ LD AG P+ L P EF LL L+ RV+ +K I + Sbjct: 135 PSGGTRRPPLRYEDLELDQQTHEVRRAGLPIQLSPTEFRLLVCLLAQPERVVGKKEILSE 194 Query: 178 LYTWDEEVTSNAVEVHVHHLRRKLG---SDFIRTVHGIGYTL 216 ++ +D + V+ +V +LRRK+ I+TV G+GY L Sbjct: 195 VWHYDFAGDARIVDTYVRNLRRKIDRFEPQLIQTVRGVGYCL 236 >UniRef50_D1VIP6 Two component transcriptional regulator, winged helix family n=1 Tax=Frankia sp. EuI1c RepID=D1VIP6_9ACTO Length = 248 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 120/222 (54%), Gaps = 5/222 (2%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALY-SAPYDAVILDLTLPGMDGRD 61 ++++EDD+ + + T L F V + GR+ AP V++D+ LP +DG + Sbjct: 27 VMVVEDDVNVSYVVATALRLAAFEVVEVSTGREALRVAGGDAPPSLVVMDVMLPDLDGFE 86 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + + G PVL L+AR L +R+ GL GADDYL KPF++ E+ AR+ ++RR Sbjct: 87 VCHRLQACGSDVPVLFLSARGNLDDRLRGLSAGADDYLAKPFSVEELVARIRVILRRRGV 146 Query: 122 -QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 ++ L G + LD R T+ G + L P E+ LL L+RNAGR +SR I + ++ Sbjct: 147 LTEASALTCGALRLDEDARRVTVGGRTIALSPTEYKLLRFLLRNAGRAVSRAQILDHVWD 206 Query: 181 WDEEVTSNAVEVHVHHLRRKLG---SDFIRTVHGIGYTLGEK 219 + + S VE + LR+K+ I TV G+GY L E+ Sbjct: 207 YGFDGESTVVETFISSLRKKVDTAPPTLIHTVRGVGYRLSEE 248 >UniRef50_A0KCT7 Two component transcriptional regulator, winged helix family n=55 Tax=cellular organisms RepID=A0KCT7_BURCH Length = 239 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 84/227 (37%), Positives = 124/227 (54%), Gaps = 11/227 (4%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RIL++EDD I D + L + V G +G L +DA+ILDL LPG+DG + Sbjct: 6 RILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVDGLE 65 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 I R R + P++I +AR + R+ GL LGADDYL KPF+++E+ AR++AL+RR + Sbjct: 66 ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 125 Query: 122 QASN------ELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIE 175 A + L + +DP R A++ G L L P+EF LL R+ G+V SR + Sbjct: 126 LARDSRIDAGTLDVAGLAIDPIAREASVDGARLDLTPREFDLLYFFARHPGKVFSRMDLL 185 Query: 176 EKLYTWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLG 217 ++ + E + V H++ LR K+ +D I TV G GY L Sbjct: 186 NAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKLA 232 >UniRef50_C8W041 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W041_DESAS Length = 384 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 83/219 (37%), Positives = 122/219 (55%), Gaps = 3/219 (1%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 IL+++DD LI D I GL G+ V G+ E + DAVILD LP + G D+ Sbjct: 166 ILIVDDDRLITDYISMGLIYEGYQVYTAYYGKDALELVKKVRIDAVILDWMLPDIQGLDL 225 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR-TNG 121 R RE ++++T +D +RV GLR GADDY+ KPF E+ ARLEA +RR T+ Sbjct: 226 CRRLRELINPV-IIMVTGKDEFIDRVNGLRAGADDYMVKPFNFAELLARLEAQLRRQTSS 284 Query: 122 QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTW 181 L + ++ + P +R A L L P EF LL L MR+ +VL +++I ++++ Sbjct: 285 PEKEVLTYADITIWPTRREARRGQLLLLLTPTEFDLLLLFMRHPRQVLPKEIILQQIWGH 344 Query: 182 DEEVTSNAVEVHVHHLRRKL-GSDFIRTVHGIGYTLGEK 219 + N VEV++ +LRRKL I TV G+GY ++ Sbjct: 345 NFTGDLNIVEVYIGYLRRKLQKPSLIHTVRGVGYLFEQQ 383 >UniRef50_B2V7Q1 Two component transcriptional regulator, winged helix family n=3 Tax=Hydrogenothermaceae RepID=B2V7Q1_SULSY Length = 231 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 77/225 (34%), Positives = 125/225 (55%), Gaps = 8/225 (3%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 I +IEDD I + + K GF V F G+ E + D V+LDL +P +DG + Sbjct: 4 IYVIEDDEDINELLTYNFKKEGFDVRSFPNGKVAFEHIKQEKPDIVVLDLMMPEVDGLEF 63 Query: 63 LREWREKGQ--REPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 + R + P+++LTA+ +++ GL LGADDY+ KPF+ E+ AR++AL+RR+ Sbjct: 64 CKLVRSDKELEHIPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKALLRRSK 123 Query: 121 ----GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEE 176 A E + G++ + P K T+ G+P+ L +F LL L+ + G+VLSR I E Sbjct: 124 SLHFPTAKPEYKFGDLKISPEKFEVTIKGQPVHLTTTQFKLLLALVNSQGKVLSRDYIIE 183 Query: 177 KLYTWDEEVTSNAVEVHVHHLRRKLGS--DFIRTVHGIGYTLGEK 219 ++ WD++V ++VH+ LR L + I+T+ G+GY + Sbjct: 184 HVWAWDKDVYDRTIDVHIKKLRELLKEYGNCIKTIRGVGYKWECE 228 >UniRef50_A5FBX2 Two component transcriptional regulator, winged helix family n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FBX2_FLAJ1 Length = 223 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 122/223 (54%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M +LLIEDD I + I GL + F+V G ++ + +D +++D+ LPG+DG Sbjct: 1 MNVLLIEDDKRISEFIIKGLEENNFTVHLAETGEMARDLVQENTWDIILMDIMLPGIDGI 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +++ R K P+LIL+A ++V L GADDYL KPF E+ +R+ AL RRT Sbjct: 61 QLVKLMRFKKIHTPILILSALSNTDDKVTALDSGADDYLVKPFHFKELISRVNALTRRTK 120 Query: 121 ---GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEK 177 + G + ++P + T + + L P+E+ LL L+ N +V+SR I Sbjct: 121 FNYNEPETLYTCGTLTINPDEHKVTENDKLIDLSPREYKLLLYLLENRNKVMSRTQILTA 180 Query: 178 LYTWDEEVTSNAVEVHVHHLRRKLGSD--FIRTVHGIGYTLGE 218 ++ + + +N V+V++ +LR K+ + FI T+ GIGY L E Sbjct: 181 VWGINYDNNTNVVDVYISYLRNKIEHNHKFIHTIKGIGYMLKE 223 >UniRef50_UPI0001C425A1 two component transcriptional regulator, winged helix family protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C425A1 Length = 233 Score = 294 bits (754), Expect = 1e-78, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 123/223 (55%), Gaps = 6/223 (2%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 +L+IEDD I + I+ + K+G+ G G E+ Y D + LD+ LP +DG ++ Sbjct: 8 VLIIEDDPHIAELIQLYMEKLGYLTQVAYDGEAGLESYYETYPDFIFLDIMLPKIDGWEL 67 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN-- 120 +E R ++ P+++LT + ++++GL +GADDY+ KPF E+ AR++A+MRR + Sbjct: 68 CQEIRWDNKKIPIIMLTGKGESQDKIKGLDIGADDYVVKPFDPNELVARMKAVMRRADLL 127 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 + +++D + A + +T+ PKE LL L +V +R+ + ++++ Sbjct: 128 NDEDQVVSLLGLVVDKKEYKAAAGDKEITMPPKELDLLYYLASYPNQVFTRQQLLDQIWG 187 Query: 181 WDEEVTSNAVEVHVHHLRRKL-GSD---FIRTVHGIGYTLGEK 219 + E ++VH+ +R KL +D I+T+ G+GY EK Sbjct: 188 YAFEGDPRTIDVHIKRIREKLTEADAKWTIKTIRGVGYKFLEK 230 >UniRef50_B8FYB6 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfitobacterium hafniense RepID=B8FYB6_DESHD Length = 237 Score = 294 bits (754), Expect = 1e-78, Method: Composition-based stats. Identities = 70/221 (31%), Positives = 117/221 (52%), Gaps = 7/221 (3%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 ++L+++DD + + +K + GF V G A D VILD+ LPG DG Sbjct: 6 KVLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIMLPGQDGLS 65 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + R R + P+++LTA+ A+RV GL +GADDY+ KPF+ E+ AR++A++RR+ Sbjct: 66 LCRRLRAV-RMIPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRSQA 124 Query: 122 QASNE---LRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 L++ + + R + + P+EF LL L +N RV +R+ + + Sbjct: 125 ADPATNWQLKYPGLEIRADIRKVLVDAAESEVTPREFDLLYHLAQNPQRVFTREELLGAV 184 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGS---DFIRTVHGIGYTL 216 + +D V+VH+ LR KL S ++++TV G+GY Sbjct: 185 WGYDYFGDQRTVDVHIRRLRTKLASLPHEYLQTVWGVGYKF 225 >UniRef50_A9AYH1 Two component transcriptional regulator, winged helix family n=2 Tax=Chloroflexi RepID=A9AYH1_HERA2 Length = 238 Score = 294 bits (754), Expect = 1e-78, Method: Composition-based stats. Identities = 86/229 (37%), Positives = 123/229 (53%), Gaps = 13/229 (5%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 IL++ED + + + + LS +G+ V GR D VILD LP +DG ++ Sbjct: 8 ILVVEDAVDLAEVLVRELSNLGYQVWHAADGRTALSLHQQHQPDLVILDWMLPQLDGLEV 67 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN-- 120 LR R+ PVL+LTAR + V GL LGADDYL KPF + E+ AR+ AL+RR Sbjct: 68 LRTIRQTK-STPVLMLTARSEETDLVVGLELGADDYLTKPFGMRELIARVRALLRRDQRI 126 Query: 121 --------GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRK 172 A+ LR+G+++LDP I L + L L P EFA+L+LL+RN GR SR Sbjct: 127 QQLLQADAQPATEVLRYGDLVLDPHLHIVALRQQELDLTPTEFAILDLLLRNPGRAFSRN 186 Query: 173 LIEEKLYTWDEEVTSNAVEVHVHHLRRKLGS--DFIRTVHGIGYTLGEK 219 + + ++ +V+ + LR+KL D I TV G+GY L + Sbjct: 187 YLLDTIWGQSYVGGDRSVDNAMLRLRKKLADFGDAIETVWGLGYRLQAE 235 >UniRef50_C6CH89 Two component transcriptional regulator, winged helix family n=2 Tax=Dickeya RepID=C6CH89_DICZE Length = 232 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 91/218 (41%), Positives = 142/218 (65%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M++L++EDD L+ +G+ + G+ D + ++ + SA Y V+LDL LP DG Sbjct: 1 MKLLIVEDDALLQEGLLQAMRNEGYVCDCASTAKEADALIASAHYSLVVLDLGLPDEDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L WR ++PVLILTARD + +RV GL +GADDY+ KPFAL E AR+ AL+RR Sbjct: 61 TLLGRWRRNHYQQPVLILTARDTVDDRVTGLDVGADDYMIKPFALSEFQARVRALIRRHQ 120 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 G + + +R N+ LD + L +P+ L PKEFA+L L+ AG + R+++ + LY+ Sbjct: 121 GSSDSWIRVDNITLDLNNQQVMLDDKPIVLTPKEFAILSRLILKAGSQVHREVLHQDLYS 180 Query: 181 WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE 218 WD++ +SN++EVH+H+LR+K+G + I+T+ G GY L + Sbjct: 181 WDDDPSSNSLEVHIHNLRQKIGKNRIKTLRGFGYLLTK 218 >UniRef50_B4CW77 Two component transcriptional regulator, winged helix family n=2 Tax=Verrucomicrobia RepID=B4CW77_9BACT Length = 229 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 78/220 (35%), Positives = 118/220 (53%), Gaps = 5/220 (2%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 IL+IEDD ++ G+K G+ V G G + + ++LDL LP ++G +I Sbjct: 7 ILIIEDDPVMLRGLKDNFEFEGYHVQTANDGDAGLKLALAIQPALIVLDLMLPKVNGYEI 66 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQ 122 R RE+ P+++LTA+ ++ V GL+LGADDY+ KPF++ E+ AR+EA +RR Q Sbjct: 67 CRFLREEKLEMPIIMLTAKGQESDIVLGLKLGADDYVTKPFSIKELLARVEAFLRRQRKQ 126 Query: 123 ASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTWD 182 G+ D R G+ + L PKEF LL L+ NAGR LSR I ++ +D Sbjct: 127 TGTVYTFGDCRFDTTARTLVRNGQDVPLSPKEFDLLTFLVTNAGRALSRDRIMSTVWGYD 186 Query: 183 EEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLG 217 VT +++ V+ LR K+ D ++TV GY Sbjct: 187 SRVTPRSIDRFVNALRNKIEPDPAEPRILKTVREFGYKFE 226 >UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillus acidophilus RepID=A1Z6C8_9FIRM Length = 229 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 77/221 (34%), Positives = 115/221 (52%), Gaps = 8/221 (3%) Query: 4 LLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDIL 63 LL++DD I + + L GF V G L P D ++LDL LP MDG +L Sbjct: 2 LLVDDDAHIRELCRMYLEHAGFDVLEAGDGPTALTQLEQHPVDVMVLDLMLPEMDGFQVL 61 Query: 64 REWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR---TN 120 E R + PV++LTA +R+ GL GADDYL KPF+ E+ +R+ A++RR Sbjct: 62 AEVRRRETWLPVIMLTALGDEEDRIMGLDQGADDYLIKPFSPRELVSRVRAVLRRAFLAP 121 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 LRH +++D +R + L L P+EF LL L + +V SR+ + ++++ Sbjct: 122 ADEGKLLRHPGLIVDVAQRRVQAGDDVLNLTPREFDLLYFLASHPKQVFSREHLLDRVWG 181 Query: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTL 216 D + S V+VHV LR+KL +++ TV G GY Sbjct: 182 LDFDGDSRTVDVHVTRLRQKLLASNTPYEYLETVWGQGYRF 222 >UniRef50_A6TPN8 Two component transcriptional regulator, winged helix family n=7 Tax=Bacteria RepID=A6TPN8_ALKMQ Length = 225 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 85/224 (37%), Positives = 128/224 (57%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 MRIL+IED++ + + + L K ++VD G G + S YD ++LD+ LP MDG Sbjct: 1 MRILIIEDEIPLAEALSQMLKKNNYTVDLLHDGESGLDYALSDIYDLILLDIMLPKMDGL 60 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 IL+E R++G PV++LTA+ + ++V GL GADDYL KPFA E+ AR+ A+ RR Sbjct: 61 SILKEIRQEGIATPVILLTAKGEITDKVMGLDSGADDYLAKPFATEELLARIRAISRRKG 120 Query: 121 GQ-ASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 L++G+V L+P + + + L KE LL L+ S++LI EK++ Sbjct: 121 EVILDGTLKYGDVQLNPSTLKLSKESKEVKLTLKESDLLAFLILRNNLASSKELIIEKIW 180 Query: 180 TWDEEVTSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTLGEK 219 +D +V N VEV++ LR+KL I T+ G+GY L K Sbjct: 181 GFDSDVEHNHVEVYISFLRKKLLFLTSKVVINTLRGVGYILEVK 224 >UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus cereus group RepID=A0RK71_BACAH Length = 232 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 82/232 (35%), Positives = 129/232 (55%), Gaps = 16/232 (6%) Query: 1 MR---ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGM 57 M+ IL+ +D+ I D I+ L K G+ V G + + + P D V+LD+ +P M Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60 Query: 58 DGRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMR 117 DG ++ R+ R K P++ L+A+ + ++V GL LGADDY+ KPF IE+ AR+ A +R Sbjct: 61 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 118 R-------TNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLS 170 R ++ + L G V++DP +R + GE + L PKEF +L LL + +V + Sbjct: 120 RFLTLNQPKVAESKSALEVGGVVIDPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYN 179 Query: 171 RKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLG 217 + I ++++ D N V VH+ LR+KLG D I+TV G+GYT Sbjct: 180 VENIFQQVWADDYFEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTFN 231 >UniRef50_C4L340 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=C4L340_EXISA Length = 229 Score = 293 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 119/223 (53%), Gaps = 6/223 (2%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RIL+ +D+ + D + + L K G+ + G + E L + V+LD+ +P +DG Sbjct: 7 RILVTDDEEQMRDLLVSNLEKEGYETVTASNGLEAIERLKEETFHLVLLDVMMPELDGLT 66 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN- 120 RE P+++LTAR +R+ GL++GADDY+ KPF+ E+ AR+EA +RRT+ Sbjct: 67 ACMRIRE-FSNVPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEATLRRTHS 125 Query: 121 --GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 + G + +D R ++ G+ + L KEF LL L + N +V SR+ + +++ Sbjct: 126 FSKEQEATFDVGILSIDIEGRAVSVKGKTVNLTRKEFDLLYLFITNDEKVFSREQLLDQI 185 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGS--DFIRTVHGIGYTLGEK 219 + + V+ H+ LR KLG +I+TV GIGY Sbjct: 186 WGTEYHGNLRTVDTHIKTLRLKLGEAGGYIQTVWGIGYKFEAN 228 >UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobacterineae RepID=Q1DCL7_MYXXD Length = 232 Score = 293 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 117/224 (52%), Gaps = 9/224 (4%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 IL++EDD+ I G+ L G+ V GR G D V+LD+ LP ++G ++ Sbjct: 8 ILVVEDDLSILTGLSMNLRFEGYEVLQAQDGRTGLARALDESPDLVVLDVMLPELNGFEV 67 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQ 122 L+E R++G+ PV++L+A+ +++ GL LGADDY+ KPF L E+ AR++A++RR Sbjct: 68 LKELRQRGRDTPVVVLSAKGMETDKIVGLNLGADDYVVKPFGLQELLARIKAVLRRRYPS 127 Query: 123 A----SNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKL 178 A + G+V +D R A P+ L +EF LL + + GR +R+ + Sbjct: 128 AGAGSPPPVTFGDVSVDMAARTVARARTPVELTAQEFKLLAHFLAHPGRTFTREELLSGA 187 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLG 217 + + E ++ V+ + LR K D TV G+GY Sbjct: 188 WGYHYEGSARTVDNFMRQLRLKFEPDPEAPRHFLTVRGLGYRFE 231 >UniRef50_Q2JX56 DNA-binding response regulator n=29 Tax=Cyanobacteria RepID=Q2JX56_SYNJA Length = 246 Score = 293 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 81/232 (34%), Positives = 124/232 (53%), Gaps = 23/232 (9%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALY---SAPYDAVILDLTLPGMD 58 RILL++D++ + D + L + G SVD +G E L + PYD ++LD LPG+ Sbjct: 3 RILLVDDEVELADSLAQHLRREGHSVDVAYEGNSAWELLQKPPAPPYDLLVLDWMLPGLS 62 Query: 59 GRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR 118 G + ++ R+ + P+L LTA+D L +RVEGL GADDYL KPF L E+ AR+ AL+RR Sbjct: 63 GLSLCQQVRQVDRATPILFLTAKDTLDDRVEGLDAGADDYLVKPFELRELLARVRALLRR 122 Query: 119 TNGQAS--NELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEE 176 G L+ G++ LD ++A G + L KEF LLE M + G++L+ + I E Sbjct: 123 AAGPGEGIPRLQIGDLELDRENQVAYRQGRMIHLSQKEFRLLEYFMAHPGQLLTHEQIYE 182 Query: 177 KLYTWDEEVTSNAVEVHV-----------HHLRRKLGSDFIRTVHGIGYTLG 217 +++ ++ +SN + V + I V+G GY G Sbjct: 183 RVWAGEDPPSSNVLAAQVRLLRRRLRLPGS-------PELIHAVYGKGYRFG 227 >UniRef50_Q47456 Transcriptional regulatory protein pcoR n=99 Tax=Bacteria RepID=PCOR_ECOLX Length = 226 Score = 293 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 89/220 (40%), Positives = 127/220 (57%), Gaps = 4/220 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 RIL++ED+ G ++ GL + G+ D F GR G A YD +ILD+ LP +DG Sbjct: 3 RILIVEDEQKTGRYLQQGLVEEGYQADLFNNGRDGLGAASKGQYDLIILDVMLPFLDGWQ 62 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 I+ RE G EPVL LTA+D + ++V+GL LGADDYL KPF E+ AR+ L+RR Sbjct: 63 IISALRESGHEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLRRARS 122 Query: 122 QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTW 181 QA+ ++ +D +R +G+ + L KE+ LLELL++ G VL R LI ++ Sbjct: 123 QAATVCTIADMTVDMVRRTVIRSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWNM 182 Query: 182 DEEVTSNAVEVHVHHLRRKLGSDF----IRTVHGIGYTLG 217 + + +N ++V V LR K+ DF I TV G GY L Sbjct: 183 NFDSDTNVIDVAVRRLRSKIDDDFEPKLIHTVRGAGYVLE 222 >UniRef50_Q0HYY3 Two component transcriptional regulator, winged helix family n=6 Tax=Shewanella RepID=Q0HYY3_SHESR Length = 253 Score = 293 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 75/221 (33%), Positives = 115/221 (52%), Gaps = 7/221 (3%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 ILL+ED+ + I L+ + F V Q L + D V+LD LP DG + Sbjct: 23 ILLVEDEQDLAQMIMVNLTALNFRVFHAASLHQANALLQAKRIDLVLLDRMLPDGDGLLL 82 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQ 122 ++ R GQ+ PV++LTARD A+ V GL GADDY+ KPF+++E+ AR +AL+RR Sbjct: 83 CQQLRNDGQQMPVMLLTARDGEADTVLGLESGADDYMTKPFSVLELRARTKALLRRHLSA 142 Query: 123 ASNE--LRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 A + + +D R PL+L KEF LL L R+ +V SR + + ++ Sbjct: 143 APTRQLIEFEGLRIDLDSREVIAFDNPLSLTAKEFDLLTFLARHPQQVFSRTQLLDAVWG 202 Query: 181 WDEEVTSNAVEVHVHHLRRKLG-----SDFIRTVHGIGYTL 216 + + + V H++ LR KL + ++TV G+GY Sbjct: 203 YRFDGFEHTVNSHINRLRGKLAHIPGSRELVQTVWGVGYKF 243 >UniRef50_C6LI81 DNA-binding response regulator DltR n=2 Tax=Clostridiales RepID=C6LI81_9FIRM Length = 248 Score = 293 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 87/224 (38%), Positives = 128/224 (57%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 M IL+IED++ + + + L K G+ D + G G E S YD ++LDL LPG+ G Sbjct: 20 MNILIIEDELHLQEALAASLKKEGYQTDCASDGISGLELALSDRYDVILLDLMLPGLGGY 79 Query: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 +L++ R + V+IL+A+ L +++ GL GADDYL KPF + E+ AR+ A+ RR Sbjct: 80 QVLKQLRREKTESAVIILSAKSELEDKIAGLDFGADDYLTKPFQMKELFARIRAVTRRHG 139 Query: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLK--PKEFALLELLMRNAGRVLSRKLIEEKL 178 +EL ++ L+ + + TL KEF L+E LMRN +V+SR I EK+ Sbjct: 140 EVVRDELVFQDLYLNIRTFTLSSSATSHTLTLGSKEFQLMEYLMRNPKQVISRSRITEKI 199 Query: 179 YTWDEEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYTLGE 218 + +D EV N V+V++ LR+KL IR V GIGYTL E Sbjct: 200 WGYDSEVEYNNVDVYISFLRKKLKHTGAHVEIRAVRGIGYTLQE 243 >UniRef50_A4AIS8 Two-component system, regulatory protein n=2 Tax=Actinobacteria (class) RepID=A4AIS8_9ACTN Length = 242 Score = 293 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 90/220 (40%), Positives = 124/220 (56%), Gaps = 4/220 (1%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 +IL++EDD +G ++ GL G++V T G A + A +D+ LP M G + Sbjct: 20 KILVVEDDAAMGALVQHGLEDDGYAVTLVTNGVDALIATAHENFSAAAIDVMLPEMTGFE 79 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 I R R++G PVL+LTARDA+ +RV GL GADDYL KPFA E AAR+ AL+RR Sbjct: 80 ICRHLRKQGNSLPVLLLTARDAVEDRVLGLDSGADDYLTKPFAFAEFAARIRALVRRDTA 139 Query: 122 QASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTW 181 L+ G + LD AT AG PL + KEFALL +L + G L+R I +++ Sbjct: 140 AGKATLKIGELALDAATVRATSAGNPLPMSSKEFALLWMLATHPGEALTRSTILSEVWGT 199 Query: 182 DEEVTSNAVEVHVHHLRRKLGSD----FIRTVHGIGYTLG 217 + +N V+ +V +LRRKL I TV G+GY L Sbjct: 200 TAHIDANVVDQYVSYLRRKLEPTQSGVTISTVRGVGYALS 239 >UniRef50_A6M1X5 Two component transcriptional regulator, winged helix family n=8 Tax=Firmicutes RepID=A6M1X5_CLOB8 Length = 229 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 79/217 (36%), Positives = 123/217 (56%), Gaps = 4/217 (1%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 IL+++D+ I D IK GL G+ V G + E + VILD+ LPGMDG ++ Sbjct: 11 ILIVDDEKSIVDFIKMGLEGEGYLVYEAYDGNEAIELARKINPNIVILDIMLPGMDGYEV 70 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQ 122 +K + V++LTA D + ++V+GL +GADDY+ KPF+ E+ AR+ A +R + + Sbjct: 71 CSII-KKSIKTSVIMLTALDEVDDKVKGLDIGADDYMAKPFSFKELLARINARIRNSFPE 129 Query: 123 ASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTWD 182 S+ GN +D T + L L P ++ LL L+ N G LS+ LI EK++ +D Sbjct: 130 LSDITNIGNFKVDDKAHEITYREKVLDLPPTQYNLLSFLLMNNGIALSKSLILEKVWGYD 189 Query: 183 EEVTSNAVEVHVHHLRRKLGS---DFIRTVHGIGYTL 216 N VEV++ +LR K+G + I+TV G+GY + Sbjct: 190 FNGEDNIVEVYIRYLRDKIGDKDHNIIKTVRGVGYKM 226 >UniRef50_B8FSL6 Two component transcriptional regulator, winged helix family n=14 Tax=Bacteria RepID=B8FSL6_DESHD Length = 237 Score = 293 bits (751), Expect = 3e-78, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 116/225 (51%), Gaps = 7/225 (3%) Query: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 ++L++ED+ I I L G+ V G L D V+LDL LPG+DG + Sbjct: 7 KVLVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALLTEFLPDLVVLDLMLPGIDGLE 66 Query: 62 ILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNG 121 + + RE ++ILTA+ +++ GL LGADDY+ KPF E+ AR++A++RR + Sbjct: 67 VCQHIRETMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAMLRRRDR 126 Query: 122 QASNE--LRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 + +G++ LD + + L P E++LL++ M N G+ L R+ + ++ Sbjct: 127 YEAGRTGYTYGSLHLDTAANKLLKNNQEVELTPTEYSLLKMFMENPGKALRREEMLNGIW 186 Query: 180 TWDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGEK 219 D + ++VH+ LR K+ + +I+T+ G GY + Sbjct: 187 GEDYFGDTKTLDVHIRRLREKIEDNPSDPRYIKTIWGSGYRWQPE 231 >UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeobacter violaceus RepID=Q7NGM9_GLOVI Length = 229 Score = 293 bits (751), Expect = 4e-78, Method: Composition-based stats. Identities = 76/220 (34%), Positives = 124/220 (56%), Gaps = 6/220 (2%) Query: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 IL++EDD + ++ L G++V GR E +ILDL LP M G ++ Sbjct: 5 ILVVEDDETLAQVLRKTLESEGYTVTLARDGRAALELGREPGLQLIILDLMLPRMSGLEV 64 Query: 63 LREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQ 122 + R + P+++LTAR ++V GLRLGADDYL KPF + E+ AR+EA++RRT+ Sbjct: 65 CQRLRSENVVTPIIMLTARGLDTDKVFGLRLGADDYLSKPFNIDELLARIEAVLRRTHQS 124 Query: 123 ASNE-LRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYTW 181 ++ + G++ +D + + L L +EF +LE L R+AG+ + R+ I ++++ + Sbjct: 125 KPSQHVSVGDLEIDFQRLSVCKNRQKLDLSSREFQVLECLFRSAGQTVDREKIYQEVWGY 184 Query: 182 DEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTL 216 D VT+ ++ H+ LR KL + +I TVHG GY Sbjct: 185 DTAVTNRTIDFHIARLRSKLEDNPKEPRYILTVHGSGYRF 224 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.314 0.227 0.884 Lambda K H 0.267 0.0693 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,431,618,395 Number of Sequences: 3077464 Number of extensions: 187749281 Number of successful extensions: 535280 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 35472 Number of HSP's successfully gapped in prelim test: 14373 Number of HSP's that attempted gapping in prelim test: 429853 Number of HSP's gapped (non-prelim): 59076 length of query: 219 length of database: 1,040,396,356 effective HSP length: 124 effective length of query: 95 effective length of database: 658,790,820 effective search space: 62585127900 effective search space used: 62585127900 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.7 bits) S2: 92 (39.3 bits)