Phyre 2 alignment of P0AD21 with d1e32a3

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Job Description | P0AD21
Confidence | 29.74% | Date | Thu Jan 5 11:19:45 GMT 2012
Rank | 6 | Aligned Residues | 17
% Identity | 59% | Template | d1e32a3
SCOP info | Cdc48 domain 2-like | Cdc48 domain 2-like | Cdc48 domain 2-like
Resolution | 2.9

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 71 | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | P | C | S | V | L | E | C | E | G | E | P | C | L | F | V | N | R | Q | D | E
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |
Template Sequence |  | P | D | T | V | I | H | C | E | G | E | P | . | . | . | I | K | R | E | D | E
Template Known Secondary structure |  | T | T |  |  |  | B |  |  | S |  |  | . | . | . | B |  |  |  | T | T
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 178 | . | 180 | . | . | . | . | . | . | . | . |  |  |  | . | 190 | . | . | . | .

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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