Phyre 2 Results for P0AD21

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Email | l.a.kelley@imperial.ac.uk
Description | P0AD21
Date | Thu Jan 5 11:19:45 GMT 2012
Unique Job ID | 6346292c0675758d

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template d2cx1a2
Top template information
Fold:Cystatin-like Superfamily:Pre-PUA domain Family:Hypothetical protein APE0525, N-terminal domain
Confidence and coverage
Confidence: | 85.5% | Coverage: | 28%
32 residues ( 28% of your sequence) have been modelled with 85.5% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | T | S | L | Q | L | S | I | V | H | R | L | P | Q | N | Y | R | W | S | A | G | F | A | G | S | K | V | E | P | I | P | Q | N | G | P | C | G | D | N | S | L | V | A | L | K | L | L | S | P | D | G | D | N | A | W | S | V | M | Y | K
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | .
Sequence |  | L | S | Q | A | L | S | D | I | E | V | P | C | S | V | L | E | C | E | G | E | P | C | L | F | V | N | R | Q | D | E | F | A | A | T | C | R | L | K | N | F | G | V | A | I | A | E | P | F | S | N | Y | N | P | F
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d2cx1a2 |

### PDB 2cx1 chain A domain 2

Region: 71 - 102
Aligned: 32
Modelled: 32
Confidence: 85.5%
Identity: 31%
Fold: Cystatin-like
Superfamily: Pre-PUA domain
Family: Hypothetical protein APE0525, N-terminal domain

Phyre2
2 |
| c1zhvA_ |

### PDB 1zhv chain A

Region: 2 - 104
Aligned: 87
Modelled: 88
Confidence: 69.9%
Identity: 22%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein atu0741;
PDBTitle: x-ray crystal structure protein atu0741 from agobacterium tumefaciens.2 northeast structural genomics consortium target atr8.

Phyre2
3 |
| d1zhva2 |

### PDB 1zhv chain A domain 2

Region: 43 - 104
Aligned: 62
Modelled: 62
Confidence: 57.5%
Identity: 18%
Fold: Ferredoxin-like
Superfamily: ACT-like
Family: Atu0741-like

Phyre2
4 |
| d1ev7a_ |

### PDB 1ev7 chain A

Region: 76 - 90
Aligned: 15
Modelled: 15
Confidence: 33.9%
Identity: 33%
Fold: Restriction endonuclease-like
Superfamily: Restriction endonuclease-like
Family: Restriction endonuclease NaeI

Phyre2
5 |
| d1w96a1 |

### PDB 1w96 chain A domain 1

Region: 14 - 71
Aligned: 56
Modelled: 58
Confidence: 33.2%
Identity: 7%
Fold: Barrel-sandwich hybrid
Superfamily: Rudiment single hybrid motif
Family: BC C-terminal domain-like

Phyre2
6 |
| d1e32a3 |

### PDB 1e32 chain A domain 3

Region: 71 - 90
Aligned: 17
Modelled: 20
Confidence: 29.7%
Identity: 59%
Fold: Cdc48 domain 2-like
Superfamily: Cdc48 domain 2-like
Family: Cdc48 domain 2-like

Phyre2
7 |
| c3zquA_ |

### PDB 3zqu chain A

Region: 94 - 112
Aligned: 19
Modelled: 19
Confidence: 25.8%
Identity: 21%
PDB header:lyase
Chain: A: PDB Molecule:probable aromatic acid decarboxylase;
PDBTitle: structure of a probable aromatic acid decarboxylase

Phyre2
8 |
| c3qocD_ |

### PDB 3qoc chain D

Region: 13 - 93
Aligned: 37
Modelled: 37
Confidence: 24.2%
Identity: 22%
PDB header:hydrolase
Chain: D: PDB Molecule:putative metallopeptidase;
PDBTitle: crystal structure of n-terminal domain (creatinase/prolidase like2 domain) of putative metallopeptidase from corynebacterium diphtheriae

Phyre2
9 |
| d1n1ta2 |

### PDB 1n1t chain A domain 2

Region: 29 - 89
Aligned: 58
Modelled: 61
Confidence: 24.0%
Identity: 19%
Fold: 6-bladed beta-propeller
Superfamily: Sialidases
Family: Sialidases (neuraminidases)

Phyre2
10 |
| d2j9ga1 |

### PDB 2j9g chain A domain 1

Region: 14 - 71
Aligned: 56
Modelled: 58
Confidence: 23.9%
Identity: 18%
Fold: Barrel-sandwich hybrid
Superfamily: Rudiment single hybrid motif
Family: BC C-terminal domain-like

Phyre2
11 |
| c2qhsA_ |

### PDB 2qhs chain A

Region: 50 - 110
Aligned: 61
Modelled: 61
Confidence: 23.3%
Identity: 11%
PDB header:transferase
Chain: A: PDB Molecule:lipoyltransferase;
PDBTitle: structural basis of octanoic acid recognition by lipoate-protein2 ligase b

Phyre2
12 |
| c2qhvA_ |

### PDB 2qhv chain A

Region: 50 - 110
Aligned: 61
Modelled: 61
Confidence: 23.3%
Identity: 11%
PDB header:transferase
Chain: A: PDB Molecule:lipoyltransferase;
PDBTitle: structural basis of octanoic acid recognition by lipoate-protein2 ligase b

Phyre2
13 |
| d1p9oa_ |

### PDB 1p9o chain A

Region: 36 - 90
Aligned: 48
Modelled: 55
Confidence: 22.4%
Identity: 15%
Fold: Ribokinase-like
Superfamily: CoaB-like
Family: CoaB-like

Phyre2
14 |
| c2ejbA_ |

### PDB 2ejb chain A

Region: 96 - 112
Aligned: 17
Modelled: 17
Confidence: 21.2%
Identity: 6%
PDB header:lyase
Chain: A: PDB Molecule:probable aromatic acid decarboxylase;
PDBTitle: crystal structure of phenylacrylic acid decarboxylase from2 aquifex aeolicus

Phyre2
15 |
| c1n1vA_ |

### PDB 1n1v chain A

Region: 29 - 89
Aligned: 58
Modelled: 61
Confidence: 19.6%
Identity: 19%
PDB header:hydrolase
Chain: A: PDB Molecule:sialidase;
PDBTitle: trypanosoma rangeli sialidase in complex with dana

Phyre2
16 |
| d1ulza1 |

### PDB 1ulz chain A domain 1

Region: 14 - 71
Aligned: 56
Modelled: 58
Confidence: 19.6%
Identity: 20%
Fold: Barrel-sandwich hybrid
Superfamily: Rudiment single hybrid motif
Family: BC C-terminal domain-like

Phyre2
17 |
| d1zvpa2 |

### PDB 1zvp chain A domain 2

Region: 41 - 100
Aligned: 56
Modelled: 60
Confidence: 19.5%
Identity: 20%
Fold: Ferredoxin-like
Superfamily: ACT-like
Family: VC0802-like

Phyre2
18 |
| d1sbza_ |

### PDB 1sbz chain A

Region: 96 - 112
Aligned: 17
Modelled: 17
Confidence: 18.4%
Identity: 29%
Fold: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
Superfamily: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
Family: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD

Phyre2
19 |
| d1w96c1 |

### PDB 1w96 chain C domain 1

Region: 14 - 71
Aligned: 56
Modelled: 58
Confidence: 18.3%
Identity: 11%
Fold: Barrel-sandwich hybrid
Superfamily: Rudiment single hybrid motif
Family: BC C-terminal domain-like

Phyre2
20 |
| c3a5zF_ |

### PDB 3a5z chain F

Region: 74 - 88
Aligned: 15
Modelled: 15
Confidence: 18.0%
Identity: 20%
PDB header:ligase
Chain: F: PDB Molecule:elongation factor p;
PDBTitle: crystal structure of escherichia coli genx in complex with elongation2 factor p

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d2cx1a2 |
|  | 85.5 | 31 | Fold:Cystatin-like Superfamily:Pre-PUA domain Family:Hypothetical protein APE0525, N-terminal domain
2 | c1zhvA_ |
|  | 69.9 | 22 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein atu0741; PDBTitle: x-ray crystal structure protein atu0741 from agobacterium tumefaciens.2 northeast structural genomics consortium target atr8.
3 | d1zhva2 |
|  | 57.5 | 18 | Fold:Ferredoxin-like Superfamily:ACT-like Family:Atu0741-like
4 | d1ev7a_ |
|  | 33.9 | 33 | Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Restriction endonuclease NaeI
5 | d1w96a1 |
|  | 33.2 | 7 | Fold:Barrel-sandwich hybrid Superfamily:Rudiment single hybrid motif Family:BC C-terminal domain-like
6 | d1e32a3 |
|  | 29.7 | 59 | Fold:Cdc48 domain 2-like Superfamily:Cdc48 domain 2-like Family:Cdc48 domain 2-like
7 | c3zquA_ |
|  | 25.8 | 21 | PDB header:lyase Chain: A: PDB Molecule:probable aromatic acid decarboxylase; PDBTitle: structure of a probable aromatic acid decarboxylase
8 | c3qocD_ |
|  | 24.2 | 22 | PDB header:hydrolase Chain: D: PDB Molecule:putative metallopeptidase; PDBTitle: crystal structure of n-terminal domain (creatinase/prolidase like2 domain) of putative metallopeptidase from corynebacterium diphtheriae
9 | d1n1ta2 |
|  | 24.0 | 19 | Fold:6-bladed beta-propeller Superfamily:Sialidases Family:Sialidases (neuraminidases)
10 | d2j9ga1 |
|  | 23.9 | 18 | Fold:Barrel-sandwich hybrid Superfamily:Rudiment single hybrid motif Family:BC C-terminal domain-like
11 | c2qhsA_ |
|  | 23.3 | 11 | PDB header:transferase Chain: A: PDB Molecule:lipoyltransferase; PDBTitle: structural basis of octanoic acid recognition by lipoate-protein2 ligase b
12 | c2qhvA_ |
|  | 23.3 | 11 | PDB header:transferase Chain: A: PDB Molecule:lipoyltransferase; PDBTitle: structural basis of octanoic acid recognition by lipoate-protein2 ligase b
13 | d1p9oa_ |
|  | 22.4 | 15 | Fold:Ribokinase-like Superfamily:CoaB-like Family:CoaB-like
14 | c2ejbA_ |
|  | 21.2 | 6 | PDB header:lyase Chain: A: PDB Molecule:probable aromatic acid decarboxylase; PDBTitle: crystal structure of phenylacrylic acid decarboxylase from2 aquifex aeolicus
15 | c1n1vA_ |
|  | 19.6 | 19 | PDB header:hydrolase Chain: A: PDB Molecule:sialidase; PDBTitle: trypanosoma rangeli sialidase in complex with dana
16 | d1ulza1 |
|  | 19.6 | 20 | Fold:Barrel-sandwich hybrid Superfamily:Rudiment single hybrid motif Family:BC C-terminal domain-like
17 | d1zvpa2 |
|  | 19.5 | 20 | Fold:Ferredoxin-like Superfamily:ACT-like Family:VC0802-like
18 | d1sbza_ |
|  | 18.4 | 29 | Fold:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
19 | d1w96c1 |
|  | 18.3 | 11 | Fold:Barrel-sandwich hybrid Superfamily:Rudiment single hybrid motif Family:BC C-terminal domain-like
20 | c3a5zF_ |
|  | 18.0 | 20 | PDB header:ligase Chain: F: PDB Molecule:elongation factor p; PDBTitle: crystal structure of escherichia coli genx in complex with elongation2 factor p
21 | c2k7mA_ |
| not modelled | 16.9 | 71 | PDB header:membrane protein Chain: A: PDB Molecule:gap junction alpha-5 protein; PDBTitle: structure of the connexin40 carboxyl terminal domain
22 | c2g7rA_ |
| not modelled | 16.5 | 25 | PDB header:hydrolase Chain: A: PDB Molecule:mucosa-associated lymphoid tissue lymphoma translocation PDBTitle: x-ray structure of the death domain of the human mucosa associated2 lymphoid tissue lymphoma translocation protein 1
23 | c2eifA_ |
| not modelled | 16.3 | 25 | PDB header:gene regulation Chain: A: PDB Molecule:protein (eukaryotic translation initiation factor 5a); PDBTitle: eukaryotic translation initiation factor 5a from methanococcus2 jannaschii
24 | c3hksB_ |
| not modelled | 14.3 | 19 | PDB header:translation, rna binding protein Chain: B: PDB Molecule:eukaryotic translation initiation factor 5a-2; PDBTitle: crystal structure of eukaryotic translation initiation2 factor eif-5a2 from arabidopsis thaliana
25 | d2ah2a2 |
| not modelled | 14.2 | 13 | Fold:6-bladed beta-propeller Superfamily:Sialidases Family:Sialidases (neuraminidases)
26 | c3oooA_ |
| not modelled | 13.4 | 18 | PDB header:hydrolase Chain: A: PDB Molecule:proline dipeptidase; PDBTitle: the structure of a proline dipeptidase from streptococcus agalactiae2 2603v
27 | d1ueba1 |
| not modelled | 12.3 | 20 | Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:eIF5a N-terminal domain-like
28 | c3b64A_ |
| not modelled | 11.5 | 10 | PDB header:cytokine Chain: A: PDB Molecule:macrophage migration inhibitory factor-like PDBTitle: macrophage migration inhibitory factor (mif) from2 /leishmania major
29 | d1fima_ |
| not modelled | 11.5 | 16 | Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:MIF-related
30 | d2g2xa1 |
| not modelled | 11.2 | 18 | Fold:PUA domain-like Superfamily:PUA domain-like Family:Atu2648/PH1033-like
31 | d1vk6a3 |
| not modelled | 11.1 | 35 | Fold:Nudix Superfamily:Nudix Family:NADH pyrophosphatase
32 | c3kdpD_ |
| not modelled | 11.0 | 47 | PDB header:hydrolase Chain: D: PDB Molecule:sodium/potassium-transporting atpase subunit beta-1; PDBTitle: crystal structure of the sodium-potassium pump
33 | c2h31A_ |
| not modelled | 10.3 | 21 | PDB header:ligase, lyase Chain: A: PDB Molecule:multifunctional protein ade2; PDBTitle: crystal structure of human paics, a bifunctional carboxylase and2 synthetase in purine biosynthesis
34 | d1pv8a_ |
| not modelled | 9.5 | 19 | Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
35 | c3fwtA_ |
| not modelled | 8.4 | 11 | PDB header:cytokine Chain: A: PDB Molecule:macrophage migration inhibitory factor-like PDBTitle: crystal structure of leishmania major mif2
36 | c2zxeB_ |
| not modelled | 8.0 | 44 | PDB header:hydrolase/transport protein Chain: B: PDB Molecule:na+,k+-atpase beta subunit; PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state
37 | c2wk1A_ |
| not modelled | 7.8 | 23 | PDB header:transferase Chain: A: PDB Molecule:novp; PDBTitle: structure of the o-methyltransferase novp
38 | c3krnB_ |
| not modelled | 7.8 | 15 | PDB header:hydrolase Chain: B: PDB Molecule:protein c14a4.5, confirmed by transcript evidence; PDBTitle: crystal structure of c. elegans cell-death-related nuclease 5(crn-5)
39 | d2gbsa1 |
| not modelled | 7.2 | 22 | Fold:PUA domain-like Superfamily:PUA domain-like Family:Atu2648/PH1033-like
40 | d2gdta1 |
| not modelled | 7.1 | 33 | Fold:SARS Nsp1-like Superfamily:SARS Nsp1-like Family:SARS Nsp1-like
41 | c3i7mA_ |
| not modelled | 7.1 | 18 | PDB header:hydrolase Chain: A: PDB Molecule:xaa-pro dipeptidase; PDBTitle: n-terminal domain of xaa-pro dipeptidase from lactobacillus brevis.
42 | d1gd0a_ |
| not modelled | 7.1 | 18 | Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:MIF-related
43 | c3er0A_ |
| not modelled | 6.9 | 19 | PDB header:translation Chain: A: PDB Molecule:eukaryotic translation initiation factor 5a-2; PDBTitle: crystal structure of the full length eif5a from2 saccharomyces cerevisiae
44 | c2gk4A_ |
| not modelled | 6.7 | 15 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: the crystal structure of the dna/pantothenate metabolism flavoprotein2 from streptococcus pneumoniae
45 | d1riea_ |
| not modelled | 6.7 | 15 | Fold:ISP domain Superfamily:ISP domain Family:Rieske iron-sulfur protein (ISP)
46 | d2prva1 |
| not modelled | 6.5 | 40 | Fold:SMI1/KNR4-like Superfamily:SMI1/KNR4-like Family:SMI1/KNR4-like
47 | d1u7za_ |
| not modelled | 6.4 | 11 | Fold:Ribokinase-like Superfamily:CoaB-like Family:CoaB-like
48 | d1laue_ |
| not modelled | 6.4 | 11 | Fold:Uracil-DNA glycosylase-like Superfamily:Uracil-DNA glycosylase-like Family:Uracil-DNA glycosylase
49 | c3o5vA_ |
| not modelled | 6.3 | 23 | PDB header:hydrolase Chain: A: PDB Molecule:x-pro dipeptidase; PDBTitle: the crystal structure of the creatinase/prolidase n-terminal domain of2 an x-pro dipeptidase from streptococcus pyogenes to 1.85a
50 | c3c9pA_ |
| not modelled | 6.3 | 20 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein sp1917; PDBTitle: crystal structure of uncharacterized protein sp1917
51 | c2f06B_ |
| not modelled | 6.1 | 15 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of protein bt0572 from bacteroides thetaiotaomicron
52 | d2evea1 |
| not modelled | 6.0 | 19 | Fold:PUA domain-like Superfamily:PUA domain-like Family:Atu2648/PH1033-like
53 | c3gacD_ |
| not modelled | 5.7 | 20 | PDB header:cytokine Chain: D: PDB Molecule:macrophage migration inhibitory factor-like PDBTitle: structure of mif with hpp
54 | d1hfoa_ |
| not modelled | 5.7 | 15 | Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:MIF-related
55 | d2gdga1 |
| not modelled | 5.7 | 16 | Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:MIF-related
56 | c3ic8D_ |
| not modelled | 5.6 | 24 | PDB header:structural genomics, unknown function Chain: D: PDB Molecule:uncharacterized gst-like proteinprotein; PDBTitle: the crystal structure of a gst-like protein from pseudomonas syringae2 to 2.4a
57 | c3treA_ |
| not modelled | 5.6 | 14 | PDB header:translation Chain: A: PDB Molecule:elongation factor p; PDBTitle: structure of a translation elongation factor p (efp) from coxiella2 burnetii
58 | d1u11a_ |
| not modelled | 5.4 | 20 | Fold:Flavodoxin-like Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
59 | c2fw9A_ |
| not modelled | 5.4 | 20 | PDB header:lyase Chain: A: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase; PDBTitle: structure of pure (n5-carboxyaminoimidazole ribonucleotide mutase)2 h59f from the acidophilic bacterium acetobacter aceti, at ph 8
60 | c4a1eF_ |
| not modelled | 5.4 | 24 | PDB header:ribosome Chain: F: PDB Molecule:rpl7a; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna, 5.8s rrna3 and proteins of molecule 1
61 | c2kllA_ |
| not modelled | 5.3 | 27 | PDB header:cytokine Chain: A: PDB Molecule:interleukin-33; PDBTitle: solution structure of human interleukin-33
62 | d1xgsa1 |
| not modelled | 5.3 | 33 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Methionine aminopeptidase, insert domain
63 | d1zcea1 |
| not modelled | 5.2 | 18 | Fold:PUA domain-like Superfamily:PUA domain-like Family:Atu2648/PH1033-like
64 | d1okba_ |
| not modelled | 5.2 | 17 | Fold:Uracil-DNA glycosylase-like Superfamily:Uracil-DNA glycosylase-like Family:Uracil-DNA glycosylase
65 | c3lodA_ |
| not modelled | 5.1 | 9 | PDB header:transferase Chain: A: PDB Molecule:putative acyl-coa n-acyltransferase; PDBTitle: the crystal structure of the putative acyl-coa n-acyltransferase from2 klebsiella pneumoniae subsp.pneumoniae mgh 78578
66 | d2icga1 |
| not modelled | 5.1 | 20 | Fold:SMI1/KNR4-like Superfamily:SMI1/KNR4-like Family:SMI1/KNR4-like

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0