15/01/2012 18:00:03 : INFO  : Run start: Sun Jan 15 18:00:02 GMT 2012
15/01/2012 18:00:04 : INFO  : Initialised job
15/01/2012 18:00:05 : INFO  : Renaming log file 'phyre2_20120115_180002.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/62eb7231e56668bc/phyre_20120115_180002.log'
15/01/2012 18:00:05 : INFO  : Initialised job:
Sequence
>batch____
MKRLSITVRLTLLFILLLSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGV
NPDTLPVYFNRMMDVSQDILIIHGDSINKIVNRTNVSDGMLNNIPASETISAAGIYRSII
NDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKINSIIICIVAIVLCSVLSPLLI
RTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPLGQALNKMHHALVKDFERLSQFA
DDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARADK
NNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVECNQQIFADKILLQRMLSNLIVNA
IRYSPEKSRIHITSFLDTNSYLNIDIASPGTKINEPEKLFRRFWRGDNSRHSVGQGLGLS
LVKAIAELHGGSATYHYLNKHNVFRITLPQRN

15/01/2012 18:00:05 : INFO  : Checked sequence
15/01/2012 18:00:06 : INFO  : Finding homologues with PSI-BLAST
15/01/2012 18:00:07 : INFO  : PSI-BLAST 3 iterations
15/01/2012 18:03:34 : INFO  : PSI-BLAST 5 iterations
15/01/2012 18:08:25 : INFO  : Finished PSI-BLAST
15/01/2012 18:08:28 : INFO  : Running Buildali to generate a3m file
15/01/2012 20:34:24 : INFO  : Converting to HMM
15/01/2012 20:35:42 : INFO  : Calibrating HMM
15/01/2012 20:36:08 : INFO  : Searching HMM database
15/01/2012 20:46:14 : INFO  : Finished buildali
15/01/2012 20:46:18 : INFO  : Predicting secondary structure
15/01/2012 20:46:32 : INFO  : Predicted secondary structure (PSI-Pred)
15/01/2012 20:46:36 : INFO  : Predicting Disordered regions
15/01/2012 20:46:43 : INFO  : Predicted Disorder (Disopred)
15/01/2012 20:46:46 : INFO  : Running memsat_svm check
15/01/2012 20:49:49 : INFO  : Globular protein
15/01/2012 20:49:51 : INFO  : Predicted Transmembrane (memsat_svm) ID '62eb7231e56668bc'
15/01/2012 20:49:56 : INFO  : Initialising fold library search
15/01/2012 20:50:01 : INFO  : Initialised search input
15/01/2012 20:50:06 : INFO  : Building Ensemble models
15/01/2012 20:50:11 : INFO  : Building hh.c3d2rB_.model.1.pdb
15/01/2012 20:50:39 : INFO  : Building hh.c2q8fA_.model.2.pdb
15/01/2012 20:51:00 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/62eb7231e56668bc/hh.c2q8fA_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/62eb7231e56668bc/c2q8fA_.2.pdb
15/01/2012 20:51:06 : INFO  : Building hh.c3d36B_.model.3.pdb
15/01/2012 20:51:29 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/62eb7231e56668bc/hh.c3d36B_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/62eb7231e56668bc/c3d36B_.3.pdb
15/01/2012 20:51:36 : INFO  : Building hh.c2bu8A_.model.4.pdb
15/01/2012 20:51:57 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/62eb7231e56668bc/hh.c2bu8A_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/62eb7231e56668bc/c2bu8A_.4.pdb
15/01/2012 20:52:07 : INFO  : Building hh.c1y8oA_.model.5.pdb
15/01/2012 20:52:28 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/62eb7231e56668bc/hh.c1y8oA_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/62eb7231e56668bc/c1y8oA_.5.pdb
15/01/2012 20:52:37 : INFO  : Building hh.c2c2aA_.model.6.pdb
15/01/2012 20:53:00 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/62eb7231e56668bc/hh.c2c2aA_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/62eb7231e56668bc/c2c2aA_.6.pdb
15/01/2012 20:53:07 : INFO  : Building c3d2rB_.1.pdb
15/01/2012 20:53:35 : INFO  : Building c2q8fA_.2.pdb
15/01/2012 20:54:01 : INFO  : Building c3d36B_.3.pdb
15/01/2012 20:54:28 : INFO  : Building c2bu8A_.4.pdb
15/01/2012 20:54:56 : INFO  : Building c1y8oA_.5.pdb
15/01/2012 20:55:22 : INFO  : Building c2c2aA_.6.pdb
15/01/2012 20:55:46 : INFO  : Building c1gjvA_.7.pdb
15/01/2012 20:56:11 : INFO  : Building c3a0rA_.8.pdb
15/01/2012 20:56:37 : INFO  : Building c3a0tA_.9.pdb
15/01/2012 20:57:04 : INFO  : Building d1jm6a2.10.pdb
15/01/2012 20:57:30 : INFO  : Building d1gkza2.11.pdb
15/01/2012 20:57:55 : INFO  : Building d1id0a_.12.pdb
15/01/2012 20:58:21 : INFO  : Building d2c2aa2.13.pdb
15/01/2012 20:58:49 : INFO  : Building d1bxda_.14.pdb
15/01/2012 20:59:14 : INFO  : Building c1b3qA_.15.pdb
15/01/2012 20:59:40 : INFO  : Building c2ch4A_.16.pdb
15/01/2012 21:00:09 : INFO  : Building d1i58a_.17.pdb
15/01/2012 21:00:35 : INFO  : Building d1ysra1.18.pdb
15/01/2012 21:01:00 : INFO  : Building c3jz3B_.19.pdb
15/01/2012 21:01:24 : INFO  : Building d1r62a_.20.pdb
15/01/2012 21:04:42 : INFO  : Finished HH model building
15/01/2012 21:04:46 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
15/01/2012 21:06:38 : INFO  : html domain output complete ID '62eb7231e56668bc'
15/01/2012 22:02:32 : INFO  : Run end  : Sun Jan 15 22:02:30 GMT 2012
