43 c3polA_ Probab=87.74   E-value=1.6  Score=21.18  Aligned_columns=217  Identities=15%

Q ss_pred             CCCCCCCCEEEEEECC--------------CCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf             7888998668998268--------------90588999999998168998189998088891059999999730783999
Q batch____        69 PQLKDNPSISIIIPCF--------------NEEKNVEETIHAALAQRYENIEVIAVNDGSTDKTRAILDRMAAQIPHLRV  134 (441)
Q Consensus        69 ~~~~~~P~VsViIP~~--------------nE~~~i~~~l~sl~~~~yp~~eiivvdd~s~D~t~~~~~~~~~~~~~~~~  134 (441)
                      .+.++.-+..|||||.              |..+.|..+++++.+....+.-+++.++      .+...........+..
T Consensus         3 ~~~~~~~~~~vIi~A~~~s~Rl~~K~Ll~v~Gkpli~~~i~~l~~~~~~~~iiVv~~~------~~~~~~~~~~~~~~~~   76 (262)
T c3polA_           3 IDDDDKHMKHIVIPARFSSSRLPGKPLLLIHDRPMILRVVDQAKKVEGFDDLCVATDD------ERIAEICRAEGVDVVL   76 (262)
T ss_dssp             SSCTTCCCEEEEEECCSCCTTSTTGGGSEETTEEHHHHHHHHHTTCCSCSEEEEEESC------HHHHHHHHTTTCEEEE
T ss_pred             CCCHHCCCEEEEEECCCCCCCCCCCEEEEECCEEHHHHHHHHHHHCCCCCEEEEECCH------HHHHHHHHHCCCCEEE
T ss_conf             6700088759999448778899871144368565799999999848998289997695------8889999753994999


Q ss_pred             EECCCCCCHHHHHHHHHHHC--CCCCEEEECCCC-EEHHHHHHHHHHHHHCCCCEEEEEEEE---------------EEE
Q ss_conf             86798898889999999833--666327813663-140779999999751078818997146---------------630
Q batch____       135 IHLAQNQGKAIALKTGAAAA--KSEYLVCIDGDA-LLDRDAAAYIVEPMLYNPRVGAVTGNP---------------RIR  196 (441)
Q Consensus       135 ~~~~~~~GK~~aln~g~~~~--~~~~~~~~DaD~-~~~~~~l~~l~~~~~~~~~~~~v~~~~---------------~~~  196 (441)
                      ...+...+...+........  ..+.++++++|+ ...++.+..++.....++.........               ...
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~d~p~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (262)
T c3polA_          77 TSADHPSGTDRLSEVARIKGWDADDIIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSMSTLCEPIHALDEFQRDSIVKVVM  156 (262)
T ss_dssp             CCSCCCCHHHHHHHHHHHHTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHCTTCSEEEEEEECCCHHHHHCTTSCEEEE
T ss_pred             ECCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCEEECHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHCCCCCCEEEEE
T ss_conf             64887651268999998500468988999828953335999999999999769935756445404876706777128998


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCC-HHHHHHHHHHCCCCEEECCC
Q ss_conf             78763100001234455443232344219901036206866199899638888555434-16899999840581898157
Q batch____       197 TRSTLVGKIQVGEYSSIIGLIKRTQRIYGNVFTVSGVIAAFRRSALAEVGYWSDDMITE-DIDISWKLQLNQWTIFYEPR  275 (441)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~g~~~~~~~~e-D~~l~~~~~~~g~~~~~~~~  275 (441)
                      +.++...............................+....++++.+++..........+ +....+++...|.++...+.
T Consensus       157 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~e~~~~~~~l~~i~~g~~v~~~~~  236 (262)
T c3polA_         157 SKQNEALYFSRATIPYDRDGAKRDEPTLHTQAFRHLGLYAYRVSLLQEYVTWEMGKLEKLESLEQLRVLENGHRIAIAVA  236 (262)
T ss_dssp             CSSSBEEEEESSCCSCCSSSSSSSSCCCCSCCEEEEEEEEEEHHHHHHHTTSCCCHHHHHHTCTTHHHHHTTCCEEEEEC
T ss_pred             CCCCCEEEEECCCCCCCCCCCHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             68995877302344222221012322012101211121332299999876048762013445778999968980699981


Q ss_pred             CCEEEECCCCHHHHHH
Q ss_conf             5110001255799988
Q batch____       276 ALCWILMPETLKGLWK  291 (441)
Q Consensus       276 ~~~~~~~p~t~~~~~~  291 (441)
                      ..-....-.|..++.+
T Consensus       237 ~~~~~~dIdtpeDL~~  252 (262)
T c3polA_         237 EANLPPGVDTQADLDR  252 (262)
T ss_dssp             SSCCCCCCCSHHHHHH
T ss_pred             CCCCCCCCCCHHHHHH
T ss_conf             6202006889999999