15/01/2012 22:05:45 : INFO  : Run start: Sun Jan 15 22:05:43 GMT 2012
15/01/2012 22:05:55 : INFO  : Initialised job
15/01/2012 22:05:58 : INFO  : Renaming log file 'phyre2_20120115_220542.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/62d052af71b1f253/phyre_20120115_220542.log'
15/01/2012 22:06:00 : INFO  : Initialised job:
Sequence
>batch____
MAQIDFRKKINWHRRYRSPQGVKTEHEILRIFESDRGRIINSPAIRRLQQKTQVFPLERN
AAVRTRLTHSMEVQQVGRYIAKEILSRLKELKLLEAYGLDELTGPFESIVEMSCLMHDIG
NPPFGHFGEAAINDWFRQRLHPEDAESQPLTDDRCSVAALRLRDGEEPLNELRRKIRQDL
CHFEGNAQGIRLVHTLMRMNLTWAQVGGILKYTRPAWWRGETPETHHYLMKKPGYYLSEE
AYIARLRKELNLALYSRFPLTWIMEAADDISYCVADLEDAVEKRIFTVEQLYHHLHEAWG
QHEKGSLFSLVVENAWEKSRSNSLSRSTEDQFFMYLRVNTLNKLVPYAAQRFIDNLPAIF
AGTFNHALLEDASECSDLLKLYKNVAVKHVFSHPDVERLELQGYRVISGLLEIYRPLLSL
SLSDFTELVEKERVKRFPIESRLFHKLSTRHRLAYVEAVSKLPSDSPEFPLWEYYYRCRL
LQDYISGMTDLYAWDEYRRLMAVEQ

15/01/2012 22:06:03 : INFO  : Checked sequence
15/01/2012 22:06:08 : INFO  : Finding homologues with PSI-BLAST
15/01/2012 22:06:11 : INFO  : PSI-BLAST 3 iterations
15/01/2012 22:08:08 : INFO  : PSI-BLAST 5 iterations
15/01/2012 22:09:55 : INFO  : Finished PSI-BLAST
15/01/2012 22:10:00 : INFO  : Running Buildali to generate a3m file
15/01/2012 22:19:45 : INFO  : Converting to HMM
15/01/2012 22:19:52 : INFO  : Calibrating HMM
15/01/2012 22:20:16 : INFO  : Searching HMM database
15/01/2012 22:29:13 : INFO  : Finished buildali
15/01/2012 22:29:17 : INFO  : Predicting secondary structure
15/01/2012 22:29:34 : INFO  : Predicted secondary structure (PSI-Pred)
15/01/2012 22:29:38 : INFO  : Predicting Disordered regions
15/01/2012 22:29:46 : INFO  : Predicted Disorder (Disopred)
15/01/2012 22:29:50 : INFO  : Running memsat_svm check
15/01/2012 22:33:51 : INFO  : Globular protein
15/01/2012 22:33:53 : INFO  : Predicted Transmembrane (memsat_svm) ID '62d052af71b1f253'
15/01/2012 22:33:56 : INFO  : Initialising fold library search
15/01/2012 22:34:03 : INFO  : Initialised search input
15/01/2012 22:34:08 : INFO  : Building Ensemble models
15/01/2012 22:34:15 : INFO  : Building hh.c3bg2A_.model.1.pdb
15/01/2012 22:34:47 : INFO  : Building hh.c2pgsA_.model.2.pdb
15/01/2012 22:35:12 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/62d052af71b1f253/hh.c2pgsA_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/62d052af71b1f253/c2pgsA_.2.pdb
15/01/2012 22:35:22 : INFO  : Building c3bg2A_.1.pdb
15/01/2012 22:35:52 : INFO  : Building c2pgsA_.2.pdb
15/01/2012 22:36:22 : INFO  : Building c2dqbB_.3.pdb
15/01/2012 22:36:53 : INFO  : Building d2heka1.4.pdb
15/01/2012 22:37:24 : INFO  : Building c2o6iA_.5.pdb
15/01/2012 22:37:53 : INFO  : Building d2o6ia1.6.pdb
15/01/2012 22:38:24 : INFO  : Building c3u1nC_.7.pdb
15/01/2012 22:38:56 : INFO  : Building c2q14A_.8.pdb
15/01/2012 22:39:28 : INFO  : Building c3ccgA_.9.pdb
15/01/2012 22:39:59 : INFO  : Building c3gw7A_.10.pdb
15/01/2012 22:40:29 : INFO  : Building c2ogiA_.11.pdb
15/01/2012 22:41:00 : INFO  : Building c2o08B_.12.pdb
15/01/2012 22:41:31 : INFO  : Building d2qgsa1.13.pdb
15/01/2012 22:42:01 : INFO  : Building d2pq7a1.14.pdb
15/01/2012 22:42:30 : INFO  : Building d3b57a1.15.pdb
15/01/2012 22:43:00 : INFO  : Building d3djba1.16.pdb
15/01/2012 22:43:32 : INFO  : Building c3m1tA_.17.pdb
15/01/2012 22:44:04 : INFO  : Building d2pjqa1.18.pdb
15/01/2012 22:44:37 : INFO  : Building d3dtoa1.19.pdb
15/01/2012 22:45:07 : INFO  : Building c3skdA_.20.pdb
15/01/2012 22:46:41 : INFO  : Finished HH model building
15/01/2012 22:46:44 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
15/01/2012 22:48:15 : INFO  : html domain output complete ID '62d052af71b1f253'
15/01/2012 23:53:58 : INFO  : Run end  : Sun Jan 15 23:53:56 GMT 2012
