16/01/2012 10:59:32 : INFO  : Run start: Mon Jan 16 10:59:30 GMT 2012
16/01/2012 10:59:41 : INFO  : Initialised job
16/01/2012 10:59:44 : INFO  : Renaming log file 'phyre2_20120116_105929.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/62c45d0618cf225c/phyre_20120116_105929.log'
16/01/2012 10:59:47 : INFO  : Initialised job:
Sequence
>batch____
MQKQAELYRGKAKTVYSTENPDLLVLEFRNDTSAGDGARIEQFDRKGMVNNKFNYFIMSK
LAEAGIPTQMERLLSDTECLVKKLDMVPVECVVRNRAAGSLVKRLGIEEGIELNPPLFDL
FLKNDAMHDPMVNESYCETFGWVSKENLARMKELTYKANDVLKKLFDDAGLILVDFKLEF
GLYKGEVVLGDEFSPDGSRLWDKETLEKMDKDRFRQSLGGLIEAYEAVARRLGVQLD

16/01/2012 10:59:49 : INFO  : Checked sequence
16/01/2012 10:59:55 : INFO  : Finding homologues with PSI-BLAST
16/01/2012 10:59:57 : INFO  : PSI-BLAST 3 iterations
16/01/2012 11:01:49 : INFO  : PSI-BLAST 5 iterations
16/01/2012 11:03:08 : INFO  : Finished PSI-BLAST
16/01/2012 11:03:12 : INFO  : Running Buildali to generate a3m file
16/01/2012 11:12:17 : INFO  : Converting to HMM
16/01/2012 11:12:22 : INFO  : Calibrating HMM
16/01/2012 11:12:40 : INFO  : Searching HMM database
16/01/2012 11:18:07 : INFO  : Finished buildali
16/01/2012 11:18:10 : INFO  : Predicting secondary structure
16/01/2012 11:18:26 : INFO  : Predicted secondary structure (PSI-Pred)
16/01/2012 11:18:29 : INFO  : Predicting Disordered regions
16/01/2012 11:18:38 : INFO  : Predicted Disorder (Disopred)
16/01/2012 11:18:41 : INFO  : Running memsat_svm check
16/01/2012 11:22:13 : INFO  : Running memsat_svm full
16/01/2012 11:29:06 : INFO  : Predicted Transmembrane (memsat_svm) ID '62c45d0618cf225c'
16/01/2012 11:29:09 : INFO  : Initialising fold library search
16/01/2012 11:29:15 : INFO  : Initialised search input
16/01/2012 11:29:20 : INFO  : Building Ensemble models
16/01/2012 11:29:26 : INFO  : Building hh.c2gqsA_.model.1.pdb
16/01/2012 11:29:55 : INFO  : Building c2gqsA_.1.pdb
16/01/2012 11:30:21 : INFO  : Building c2z02A_.2.pdb
16/01/2012 11:30:46 : INFO  : Building c3kreA_.3.pdb
16/01/2012 11:31:11 : INFO  : Building c3nuaB_.4.pdb
16/01/2012 11:31:38 : INFO  : Building c2ywvB_.5.pdb
16/01/2012 11:32:04 : INFO  : Building d2cnqa1.6.pdb
16/01/2012 11:32:31 : INFO  : Building c3r9rA_.7.pdb
16/01/2012 11:32:57 : INFO  : Building d1kuta_.8.pdb
16/01/2012 11:33:24 : INFO  : Building c2h31A_.9.pdb
16/01/2012 11:33:51 : INFO  : Building c1zp9A_.10.pdb
16/01/2012 11:34:18 : INFO  : Building d2h3ka1.11.pdb
16/01/2012 11:34:46 : INFO  : Building c3nj2B_.12.pdb
16/01/2012 11:35:12 : INFO  : Building d1kjqa3.13.pdb
16/01/2012 11:35:40 : INFO  : Building d2a5za1.14.pdb
16/01/2012 11:36:09 : INFO  : Building d1i4ya_.15.pdb
16/01/2012 11:36:35 : INFO  : Building c3g7pA_.16.pdb
16/01/2012 11:37:04 : INFO  : Building c2pvpB_.17.pdb
16/01/2012 11:37:32 : INFO  : Building d1pmia_.18.pdb
16/01/2012 11:37:59 : INFO  : Building c3lzcA_.19.pdb
16/01/2012 11:38:30 : INFO  : Building c2auwB_.20.pdb
16/01/2012 11:39:28 : INFO  : Finished HH model building
16/01/2012 11:39:31 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
16/01/2012 11:40:37 : INFO  : html domain output complete ID '62c45d0618cf225c'
16/01/2012 12:12:08 : INFO  : Run end  : Mon Jan 16 12:12:06 GMT 2012
