Phyre 2 alignment of P0A7D7 with c2pvpB_

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Job Description | P0A7D7
Confidence | 16.75% | Date | Thu Jan 5 11:05:25 GMT 2012
Rank | 17 | Aligned Residues | 44
% Identity | 34% | Template | c2pvpB_
PDB info | PDB header:ligase | Chain: B: PDB Molecule:d-alanine-d-alanine ligase; | PDBTitle: crystal structure of d-alanine-d-alanine ligase from helicobacter2 pylori
Resolution | 2.40 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 143 | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | V | S | K | E | N | L | A | R | M | K | E | L | T | Y | K | A | N | D | V | L | K | K | L | F | D | D | A | G | L | I | L | V | D | F | K | L | E | F | G | L | Y | K | G | E | V | V | L | G | D | E | F | S | P
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  | . |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  | . |  |  |  |
Template Sequence |  | L | S | N | A | L | E | E | Q | L | K | E | N | F | K | K | L | Y | S | D | L | . | . | . | . | F | D | G | A | I | I | R | C | D | F | F | V | . | . | . | . | I | E | N | E | V | Y | L | N | . | E | I | N | P
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | T | . | . | . | . | T | T | T |  |  |  |  |  |  |  |  |  | . | . | . | . |  | T | T |  |  |  |  |  | . |  |  |  | S
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  | . |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . |  |  |  |  | 280 | . | . | . | . | . | . | . | . | . | 290 | . |  |  |  |  | . | . | . | . | . | . | . | . |  | 300 | . | . | .

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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