BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (529 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P08957 Type I restriction enzyme EcoKI M protein n=51 T... 1102 0.0 UniRef50_UPI000190A448 hypothetical protein Salmonelentericaente... 548 e-154 UniRef50_C9P2L7 Type I restriction-modification system DNA-methy... 506 e-142 UniRef50_B0VPS9 DNA methylase M, host modification n=3 Tax=Prote... 496 e-139 UniRef50_Q210J9 N-6 DNA methylase n=5 Tax=Proteobacteria RepID=Q... 473 e-131 UniRef50_C4KDM7 Site-specific DNA-methyltransferase (Adenine-spe... 466 e-130 UniRef50_C6CZ62 N-6 DNA methylase n=16 Tax=Bacteria RepID=C6CZ62... 456 e-127 UniRef50_C3MFA0 N-6 DNA methylase n=5 Tax=Proteobacteria RepID=C... 452 e-125 UniRef50_UPI0001C36A8B N-6 DNA methylase n=1 Tax=Clostridium hat... 436 e-120 UniRef50_A8YW15 Type I restriction modification system n=8 Tax=B... 423 e-117 UniRef50_Q1MKB0 Putative type I restriction enzyme modification ... 357 5e-97 UniRef50_D1C5W3 N-6 DNA methylase n=39 Tax=cellular organisms Re... 324 7e-87 UniRef50_A3XPV4 Type I restriction-modification system specifici... 312 2e-83 UniRef50_Q7VG99 Type I restriction-modification system n=2 Tax=B... 298 3e-79 UniRef50_B5H9V2 N-6 DNA methylase n=1 Tax=Streptomyces pristinae... 282 2e-74 UniRef50_A8ZTW6 N-6 DNA methylase n=5 Tax=cellular organisms Rep... 279 2e-73 UniRef50_Q89Z59 Probable type I restriction enzyme BthVORF4518P ... 275 4e-72 UniRef50_D2TNZ8 Putative type I restriction modification system ... 268 5e-70 UniRef50_A7BWE8 Type I restriction enzyme StySPI M protein n=1 T... 244 5e-63 UniRef50_A8ZY58 N-6 DNA methylase n=1 Tax=Desulfococcus oleovora... 184 6e-45 UniRef50_B7KLE1 N-6 DNA methylase n=1 Tax=Cyanothece sp. PCC 742... 168 4e-40 UniRef50_C7P6B0 N-6 DNA methylase n=1 Tax=Methanocaldococcus fer... 163 1e-38 UniRef50_B1IB55 Type I restriction modification enzyme methylase... 161 7e-38 UniRef50_C3NN83 N-6 DNA methylase n=1 Tax=Sulfolobus islandicus ... 161 7e-38 UniRef50_A9B990 N-6 DNA methylase n=2 Tax=Chloroflexi (class) Re... 159 3e-37 UniRef50_Q5HSN6 Type I restriction-modification system, M subuni... 158 5e-37 UniRef50_B8KQ49 Type I restriction-modification system, M subuni... 157 1e-36 UniRef50_C5ZY48 Type I restriction-modification system, M subuni... 156 2e-36 UniRef50_C6A4W7 Type I restriction-modification system methyltra... 155 3e-36 UniRef50_B4VZI3 N-6 DNA Methylase family n=2 Tax=Bacteria RepID=... 151 7e-35 UniRef50_UPI0001B4C614 type I restriction-modification system, M... 151 8e-35 UniRef50_B1VEP0 Type I restriction-modification system, methyltr... 150 1e-34 UniRef50_A0QMK9 Type I restriction-modification system, M subuni... 147 7e-34 UniRef50_Q47282 Type I restriction enzyme EcoEI M protein n=110 ... 146 2e-33 UniRef50_B7KF58 N-6 DNA methylase n=4 Tax=Bacteria RepID=B7KF58_... 145 4e-33 UniRef50_C6BRN9 N-6 DNA methylase n=26 Tax=Bacteria RepID=C6BRN9... 143 2e-32 UniRef50_Q6IVN0 Predicted HsdM n=1 Tax=uncultured gamma proteoba... 142 2e-32 UniRef50_C9MRT4 Type I restriction-modification system, M subuni... 140 9e-32 UniRef50_A3CUH5 N-6 DNA methylase n=4 Tax=cellular organisms Rep... 140 2e-31 UniRef50_A5KSM6 N-6 DNA methylase n=1 Tax=candidate division TM7... 139 3e-31 UniRef50_D2QLF2 Site-specific DNA-methyltransferase (Adenine-spe... 138 4e-31 UniRef50_Q3AQE5 Type I restriction modification enzyme methylase... 138 5e-31 UniRef50_D1X0A9 N-6 DNA methylase n=2 Tax=Bacteria RepID=D1X0A9_... 137 8e-31 UniRef50_C0E6A6 Putative uncharacterized protein n=2 Tax=Coryneb... 135 3e-30 UniRef50_A6W079 N-6 DNA methylase n=16 Tax=Bacteria RepID=A6W079... 135 6e-30 UniRef50_Q7MJG0 Type I restriction-modification system methyltra... 131 5e-29 UniRef50_B0BR03 Type I restriction-modification system M subunit... 131 6e-29 UniRef50_A5VLF8 N-6 DNA methylase n=17 Tax=Bacteria RepID=A5VLF8... 131 8e-29 UniRef50_B4S214 Type I restriction-modification system methyltra... 130 9e-29 UniRef50_C8W944 N-6 DNA methylase n=1 Tax=Atopobium parvulum DSM... 130 1e-28 UniRef50_B4RYU9 Type I restriction-modification system methyltra... 130 2e-28 UniRef50_A1ZTI9 Type I restriction-modification system specifici... 130 2e-28 UniRef50_A5GB18 N-6 DNA methylase n=2 Tax=Bacteria RepID=A5GB18_... 129 2e-28 UniRef50_C4WKW1 Type I restriction enzyme EcoEI specificity prot... 129 3e-28 UniRef50_C3PKU9 Type I restriction enzyme M protein n=8 Tax=Bact... 129 3e-28 UniRef50_C9KLJ9 Type I restriction-modification system, M subuni... 129 4e-28 UniRef50_C7RVC4 N-6 DNA methylase n=2 Tax=Bacteria RepID=C7RVC4_... 128 5e-28 UniRef50_A7IDE4 N-6 DNA methylase n=3 Tax=Proteobacteria RepID=A... 128 5e-28 UniRef50_B3CDF6 Putative uncharacterized protein n=1 Tax=Bactero... 127 1e-27 UniRef50_C3XHF2 Type I restriction-modification system M subunit... 126 2e-27 UniRef50_Q5NWK9 Type I restriction-modification system (Specific... 126 2e-27 UniRef50_A2TPX2 Type I restriction modification system M subunit... 124 8e-27 UniRef50_A3RQ90 Type I restriction-modification system methylati... 124 9e-27 UniRef50_C0QCH3 HsdM2 n=5 Tax=Bacteria RepID=C0QCH3_DESAH 123 1e-26 UniRef50_B7RYA8 N-6 DNA Methylase family protein n=2 Tax=Bacteri... 120 9e-26 UniRef50_D0LNE1 Type I restriction-modification system, M subuni... 120 1e-25 UniRef50_A4AK44 Type I restriction-modification system methylati... 120 1e-25 UniRef50_C9KRW3 Type I restriction-modification system, M subuni... 120 1e-25 UniRef50_B2HKY8 Type I restriction/modification system DNA methy... 120 2e-25 UniRef50_B3EKI4 N-6 DNA methylase n=1 Tax=Chlorobium phaeobacter... 119 2e-25 UniRef50_B3EE94 N-6 DNA methylase n=3 Tax=Bacteria RepID=B3EE94_... 119 2e-25 UniRef50_Q73QS4 Type I restriction-modification system, M subuni... 118 4e-25 UniRef50_A9FYU4 Probable type I restriction-modification system,... 118 5e-25 UniRef50_B0V9R4 Putative uncharacterized protein n=2 Tax=Acineto... 117 1e-24 UniRef50_B9XME0 N-6 DNA methylase n=1 Tax=bacterium Ellin514 Rep... 117 1e-24 UniRef50_C6BT25 N-6 DNA methylase n=1 Tax=Desulfovibrio salexige... 117 1e-24 UniRef50_B3QZM0 Type I restriction-modification system methyltra... 116 2e-24 UniRef50_A0KWT9 N-6 DNA methylase n=5 Tax=Bacteria RepID=A0KWT9_... 115 3e-24 UniRef50_Q4KCG2 Type I restriction-modification system, M subuni... 115 3e-24 UniRef50_A6WNE4 Type I restriction-modification system, M subuni... 115 5e-24 UniRef50_C6P389 N-6 DNA methylase n=1 Tax=Sideroxydans lithotrop... 115 5e-24 UniRef50_C7QWT4 Type III restriction protein res subunit n=1 Tax... 114 1e-23 UniRef50_A1WBU7 N-6 DNA methylase n=19 Tax=Bacteria RepID=A1WBU7... 114 1e-23 UniRef50_A1T135 N-6 DNA methylase n=22 Tax=Actinomycetales RepID... 113 1e-23 UniRef50_B3EQE6 Type I restriction-modification system, M subuni... 113 2e-23 UniRef50_C9NJI6 N-6 DNA methylase n=1 Tax=Streptomyces flavogris... 113 2e-23 UniRef50_A5VVC4 Type I restriction-modification system, M subuni... 113 2e-23 UniRef50_Q0AUQ5 Type I restriction-modification system, M subuni... 112 4e-23 UniRef50_D1VS23 Type I restriction-modification system methyltra... 112 4e-23 UniRef50_B1ZYW9 N-6 DNA methylase n=31 Tax=cellular organisms Re... 111 7e-23 UniRef50_Q72BC7 Type I restriction-modification system, M subuni... 111 7e-23 UniRef50_Q5LGD1 Putative modification protein of type I restrict... 110 1e-22 UniRef50_A6LK23 Type I restriction-modification system, M subuni... 110 1e-22 UniRef50_Q2J5S8 N-6 DNA methylase n=5 Tax=Bacteria RepID=Q2J5S8_... 110 1e-22 UniRef50_A4XPR7 Type I restriction-modification system, M subuni... 108 6e-22 UniRef50_B0TYP3 Type I restriction-modification system methyltra... 107 9e-22 UniRef50_B5Y2R2 Type I restriction-modification system, M subuni... 107 9e-22 UniRef50_C2EIH9 Restriction-modification protein n=1 Tax=Lactoba... 107 1e-21 UniRef50_C6DZ06 Type I restriction-modification system, M subuni... 107 1e-21 UniRef50_D0SHY2 Predicted protein n=2 Tax=Acinetobacter RepID=D0... 107 2e-21 UniRef50_A9A373 Type I restriction-modification system, M subuni... 106 2e-21 UniRef50_A7HVM7 Type I restriction-modification system, M subuni... 106 2e-21 UniRef50_D2R8Y7 Type I restriction-modification system, M subuni... 106 2e-21 UniRef50_B0VGE9 Restriction modification system DNA specificity ... 105 3e-21 UniRef50_Q6YRQ9 Slr6095 protein n=4 Tax=Bacteria RepID=Q6YRQ9_SYNY3 105 4e-21 UniRef50_B6ENI7 N-6 adenine-specific DNA methylase n=19 Tax=root... 105 5e-21 UniRef50_A8GYC6 Type I restriction-modification system methyltra... 105 5e-21 UniRef50_O27025 Type I restriction modification enzyme, subunit ... 105 5e-21 UniRef50_C4Z2E8 Type I restriction enzyme M protein n=4 Tax=Firm... 105 6e-21 UniRef50_A3XVM8 Type I restriction-modification system M subunit... 104 8e-21 UniRef50_D0MHM2 N-6 DNA methylase n=3 Tax=Bacteria RepID=D0MHM2_... 104 1e-20 UniRef50_C8VZI4 Type I restriction-modification system, M subuni... 103 2e-20 UniRef50_D2MUT8 Type I restriction-modification system, M subuni... 103 2e-20 UniRef50_A8ZYK3 N-6 DNA methylase n=1 Tax=Desulfococcus oleovora... 102 3e-20 UniRef50_D0LVD7 Site-specific DNA-methyltransferase (Adenine-spe... 102 4e-20 UniRef50_B9M294 N-6 DNA methylase n=2 Tax=Proteobacteria RepID=B... 100 1e-19 UniRef50_C0QQY6 Type I restriction enzyme M protein (HsdM) n=1 T... 100 1e-19 UniRef50_A6TVC2 N-6 DNA methylase n=4 Tax=Bacteria RepID=A6TVC2_... 100 2e-19 UniRef50_C7TL46 Type I restriction-modification system, M subuni... 100 3e-19 UniRef50_C7BP30 Type I restriction enzyme, modification subunit ... 99 3e-19 UniRef50_Q3ADV1 Type I restriction-modification system, M subuni... 99 3e-19 UniRef50_Q5YY36 Putative restriction-modification system endonuc... 99 5e-19 UniRef50_C8XCE4 Site-specific DNA-methyltransferase (Adenine-spe... 99 5e-19 UniRef50_B7GLJ2 Type I restriction-modification system methyltra... 99 5e-19 UniRef50_D1SQT0 N-6 DNA methylase n=1 Tax=Acidovorax avenae subs... 98 8e-19 UniRef50_A8YVB4 Type I restriction-modification system modificat... 98 9e-19 UniRef50_D1VRI9 PutatIve type i restriction enzyme hindviip m pr... 97 1e-18 UniRef50_UPI000190F6C8 DNA methylase M, host modification n=1 Ta... 97 1e-18 UniRef50_UPI0001C37526 type I restriction-modification system me... 97 2e-18 UniRef50_C7NP01 N-6 DNA methylase n=2 Tax=Halobacteriaceae RepID... 96 3e-18 UniRef50_UPI000038E019 type I restriction-modification system me... 96 3e-18 UniRef50_B8HN07 N-6 DNA methylase n=2 Tax=Bacteria RepID=B8HN07_... 96 4e-18 UniRef50_A1AQ49 N-6 DNA methylase n=2 Tax=Proteobacteria RepID=A... 96 4e-18 UniRef50_Q2FXD0 Type I restriction-modification system, M subuni... 95 6e-18 UniRef50_B8F3Y0 Type I restriction-modification system methyltra... 95 8e-18 UniRef50_A0Q1H9 Type I restriction-modification system DNA methy... 94 9e-18 UniRef50_Q47163 Type I restriction enzyme EcoprrI M protein n=13... 94 9e-18 UniRef50_Q4A128 Putative type I restriction-modification system ... 94 1e-17 UniRef50_Q3M7D1 N-6 DNA methylase n=5 Tax=Bacteria RepID=Q3M7D1_... 94 1e-17 UniRef50_D1XRZ6 N-6 DNA methylase n=1 Tax=Streptomyces sp. ACTE ... 94 1e-17 UniRef50_Q7X0F3 M.AhdI n=1 Tax=Aeromonas hydrophila RepID=Q7X0F3... 93 2e-17 UniRef50_B5ZAK9 Type I restriction enzyme n=13 Tax=Mycoplasmatac... 93 3e-17 UniRef50_A6TNL6 Type I restriction-modification system, M subuni... 93 3e-17 UniRef50_UPI0001BC44FA type I restriction-modification system DN... 93 3e-17 UniRef50_C5S255 Type I restriction-modification system n=2 Tax=A... 93 3e-17 UniRef50_B4A465 N-6 DNA Methylase family protein n=3 Tax=Salmone... 92 4e-17 UniRef50_C3JA79 Type I restriction-modification system, M subuni... 92 4e-17 UniRef50_B1VHI4 Type I restriction-modification system, methyltr... 92 5e-17 UniRef50_Q12V00 N-6 DNA methylase n=24 Tax=cellular organisms Re... 92 5e-17 UniRef50_A1U632 N-6 DNA methylase n=17 Tax=cellular organisms Re... 92 6e-17 UniRef50_Q11PS3 Type I restriction-modification system, M subuni... 91 1e-16 UniRef50_UPI0001B4AB1B type I restriction-modification system me... 90 2e-16 UniRef50_A8L1U0 N-6 DNA methylase n=3 Tax=Actinomycetales RepID=... 90 2e-16 UniRef50_B5EVZ6 Type I restriction-modification system, M subuni... 90 2e-16 UniRef50_B5Y625 Type I restriction/modification enzyme n=1 Tax=C... 89 4e-16 UniRef50_C7MM99 Type I restriction system adenine methylase HsdM... 89 4e-16 UniRef50_A6P0G2 Putative uncharacterized protein n=2 Tax=Bacteri... 89 4e-16 UniRef50_A5UWR2 N-6 DNA methylase n=9 Tax=cellular organisms Rep... 89 4e-16 UniRef50_C6MCS3 N-6 DNA methylase n=2 Tax=Proteobacteria RepID=C... 89 5e-16 UniRef50_B0S3L0 Type I restriction-modification system DNA methy... 89 6e-16 UniRef50_A4CI92 Type I restriction-modification system DNA methy... 88 8e-16 UniRef50_D2NT11 Type I restriction-modification system methyltra... 88 1e-15 UniRef50_Q0KFR5 Type I restriction-modification system methylati... 88 1e-15 UniRef50_C2C3E3 Site-specific DNA-methyltransferase, adenine-spe... 87 1e-15 UniRef50_UPI0001B52AE5 type I restriction-modification system, M... 87 1e-15 UniRef50_B0S355 Type I restriction-modification system DNA methy... 87 2e-15 UniRef50_C7NM08 Type I restriction-modification system methyltra... 87 2e-15 UniRef50_A3J6X4 Type I restriction-modification n=1 Tax=Flavobac... 87 2e-15 UniRef50_B1MYY1 Type I restriction-modification system, M subuni... 87 2e-15 UniRef50_C8MCW8 Predicted protein n=1 Tax=Staphylococcus aureus ... 86 3e-15 UniRef50_Q3A0E7 Type I restriction-modification system methyltra... 86 3e-15 UniRef50_A6NS04 Putative uncharacterized protein n=1 Tax=Bactero... 85 5e-15 UniRef50_B0JHK8 Type I restriction enzyme EcoEI M protein homolo... 85 7e-15 UniRef50_Q2KZB8 Restriction-modification system, modification (M... 85 9e-15 UniRef50_B2VGL9 Type I restriction-modification system, M subuni... 84 9e-15 UniRef50_D0I0N8 Type I restriction-modification system M subunit... 84 1e-14 UniRef50_B2A7T0 N-6 DNA methylase n=13 Tax=Bacteria RepID=B2A7T0... 84 1e-14 UniRef50_A5GE24 N-6 DNA methylase n=13 Tax=Bacteria RepID=A5GE24... 84 1e-14 UniRef50_Q3J7Q6 N-6 DNA methylase n=7 Tax=Bacteria RepID=Q3J7Q6_... 83 2e-14 UniRef50_Q31IU5 Type I restriction-modification system, M subuni... 83 2e-14 UniRef50_Q57168 Putative type I restriction enzyme HindVIIP M pr... 83 2e-14 UniRef50_Q3ZWI3 Putative type I restriction-modification system ... 83 3e-14 UniRef50_A5WF32 N-6 DNA methylase n=11 Tax=Proteobacteria RepID=... 83 3e-14 UniRef50_C9RQV8 N-6 DNA methylase n=4 Tax=Bacteria RepID=C9RQV8_... 83 3e-14 UniRef50_Q4HS21 Type I restriction-modification system, M subuni... 82 3e-14 UniRef50_C2RWF6 N-6 DNA methylase n=1 Tax=Bacillus cereus BDRD-S... 82 5e-14 UniRef50_C7NHN8 Type I restriction-modification system methyltra... 82 5e-14 UniRef50_C9KRW2 Type I restriction-modification system, M subuni... 82 5e-14 UniRef50_D2NY13 Type I restriction enzyme M protein n=5 Tax=List... 82 5e-14 UniRef50_C6MIL3 N-6 DNA methylase n=1 Tax=Nitrosomonas sp. AL212... 82 5e-14 UniRef50_A6EJ97 Type I restriction-modification system methyltra... 82 6e-14 UniRef50_Q7NAH5 HsdM n=1 Tax=Mycoplasma gallisepticum RepID=Q7NA... 82 6e-14 UniRef50_P75436 Putative type I restriction enzyme MpnORFDP M pr... 82 8e-14 UniRef50_Q1Q861 N-6 DNA methylase n=1 Tax=Psychrobacter cryohalo... 81 8e-14 UniRef50_A6EUA8 Type I restriction-modification n=1 Tax=unidenti... 81 1e-13 UniRef50_Q31PC9 Type I restriction-modification n=27 Tax=cellula... 81 1e-13 UniRef50_A8YEM4 Genome sequencing data, contig C300 n=4 Tax=Bact... 81 1e-13 UniRef50_B1VGZ7 Type I restriction-modification system, methyltr... 80 2e-13 UniRef50_Q5M500 Type I restriction-modification system methyltra... 80 2e-13 UniRef50_C9KUR0 Putative type I restriction-modification system,... 80 2e-13 UniRef50_C5RYW3 Type I restriction-modification system methyltra... 80 2e-13 UniRef50_B5GUA5 N-6 DNA methylase n=1 Tax=Streptomyces clavulige... 80 2e-13 UniRef50_Q47GH6 N-6 DNA methylase n=13 Tax=cellular organisms Re... 80 3e-13 UniRef50_A3D8X6 Type I restriction-modification system, M subuni... 80 3e-13 UniRef50_A8ZRN8 N-6 DNA methylase n=14 Tax=cellular organisms Re... 80 3e-13 UniRef50_Q3SFH7 Type I restriction-modification system methyltra... 79 3e-13 UniRef50_C8RRG5 Type I restriction-modification system, M subuni... 79 3e-13 UniRef50_A1TSH9 N-6 DNA methylase n=4 Tax=cellular organisms Rep... 79 4e-13 UniRef50_Q8DGT5 Type I site-specific deoxyribonuclease modificat... 79 4e-13 UniRef50_A5IZ14 Modification (Methylase) protein of type Irestri... 79 5e-13 UniRef50_A1BH53 N-6 DNA methylase n=4 Tax=Bacteria RepID=A1BH53_... 78 7e-13 UniRef50_C2E8R1 Site-specific DNA-methyltransferase n=15 Tax=Fir... 78 8e-13 UniRef50_C7IHQ9 N-6 DNA methylase n=1 Tax=Clostridium papyrosolv... 78 8e-13 UniRef50_Q65QI8 HsdM protein n=8 Tax=Proteobacteria RepID=Q65QI8... 78 8e-13 UniRef50_C7N817 Type I restriction-modification system methyltra... 78 8e-13 UniRef50_Q58617 Uncharacterized adenine-specific methylase MJ122... 78 9e-13 UniRef50_C1ZKX4 Type I restriction-modification system methyltra... 77 1e-12 UniRef50_A0YWS1 Type I restriction-modification system methyltra... 77 1e-12 UniRef50_C9L2F5 Type I restriction-modification system, M subuni... 77 1e-12 UniRef50_Q60297 Putative type I restriction enzyme MjaXP M prote... 77 1e-12 UniRef50_A3DAQ0 N-6 DNA methylase n=1 Tax=Shewanella baltica OS1... 77 2e-12 UniRef50_B2UNL2 Type I restriction-modification system, M subuni... 77 2e-12 UniRef50_B4VJK3 N-6 DNA Methylase family n=1 Tax=Microcoleus cht... 77 2e-12 UniRef50_Q0BM27 Type I site-specific deoxyribonuclease n=8 Tax=F... 77 2e-12 UniRef50_Q160U6 Type I restriction-modification system DNA methy... 76 3e-12 UniRef50_A9DR80 Restriction/modification methyltransferase n=2 T... 76 3e-12 UniRef50_UPI00017F5863 N-6 DNA methylase n=1 Tax=Clostridium dif... 75 4e-12 UniRef50_C7P732 N-6 DNA methylase n=1 Tax=Methanocaldococcus fer... 75 5e-12 UniRef50_C3RBV5 N-6 DNA methylase n=5 Tax=Bacteroidales RepID=C3... 75 5e-12 UniRef50_C8W115 Type I restriction-modification system, M subuni... 75 6e-12 UniRef50_Q39L72 N-6 DNA methylase n=1 Tax=Burkholderia sp. 383 R... 75 6e-12 UniRef50_C8P6G6 Type I restriction-modification n=2 Tax=Bacteria... 75 7e-12 UniRef50_B7K553 N-6 DNA methylase n=13 Tax=cellular organisms Re... 75 7e-12 UniRef50_C0W5F1 Type I restriction-modification system methyltra... 75 7e-12 UniRef50_B2IZZ1 N-6 DNA methylase n=1 Tax=Nostoc punctiforme PCC... 75 9e-12 UniRef50_B7KIM1 N-6 DNA methylase n=3 Tax=Bacteria RepID=B7KIM1_... 75 9e-12 UniRef50_B6B3M8 Type I site-specific deoxyribonuclease n=1 Tax=R... 74 1e-11 UniRef50_C5VLJ5 N-6 DNA methylase n=1 Tax=Prevotella melaninogen... 74 1e-11 UniRef50_A3US41 Putative restriction-modification system methylt... 74 1e-11 UniRef50_B5E829 N-6 DNA methylase n=1 Tax=Geobacter bemidjiensis... 74 1e-11 UniRef50_C5G2A7 Type I site-specific deoxyribonuclease methyltra... 74 1e-11 UniRef50_Q14MH6 Hypothetical n-6 adenine-specific dna methyltran... 74 2e-11 UniRef50_D2MJZ6 Type I restriction-modification system, M subuni... 73 3e-11 UniRef50_C0MH51 Putative type I restriction enzyme methylase pro... 73 3e-11 UniRef50_B9ACI4 Putative uncharacterized protein n=1 Tax=Methano... 72 4e-11 UniRef50_B2SH36 N-6 DNA Methylase family n=14 Tax=Gammaproteobac... 72 5e-11 UniRef50_C9R6G8 Type I modification enzyme n=14 Tax=cellular org... 72 6e-11 UniRef50_C4XFR3 Putative uncharacterized protein n=1 Tax=Mycopla... 72 7e-11 UniRef50_C4FI04 Putative type I restriction-modification system,... 71 8e-11 UniRef50_B0T4G1 N-6 DNA methylase n=2 Tax=Bacteria RepID=B0T4G1_... 71 9e-11 >UniRef50_P08957 Type I restriction enzyme EcoKI M protein n=51 Tax=Bacteria RepID=T1MK_ECOLI Length = 529 Score = 1102 bits (2850), Expect = 0.0, Method: Compositional matrix adjust. Identities = 529/529 (100%), Positives = 529/529 (100%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLK 60 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLK Sbjct: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLK 60 Query: 61 SRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAH 120 SRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAH Sbjct: 61 SRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAH 120 Query: 121 GKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAG 180 GKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAG Sbjct: 121 GKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAG 180 Query: 181 FLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDH 240 FLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDH Sbjct: 181 FLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDH 240 Query: 241 GGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETL 300 GGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETL Sbjct: 241 GGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETL 300 Query: 301 HPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 360 HPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG Sbjct: 301 HPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 360 Query: 361 TVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEW 420 TVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEW Sbjct: 361 TVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEW 420 Query: 421 SFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLP 480 SFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLP Sbjct: 421 SFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLP 480 Query: 481 EPDVLAAEAMGELVQALSELDALMRELGASDEADLQRQLLEEAFGGVKE 529 EPDVLAAEAMGELVQALSELDALMRELGASDEADLQRQLLEEAFGGVKE Sbjct: 481 EPDVLAAEAMGELVQALSELDALMRELGASDEADLQRQLLEEAFGGVKE 529 >UniRef50_UPI000190A448 hypothetical protein Salmonelentericaenterica_35384 n=2 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI000190A448 Length = 306 Score = 548 bits (1412), Expect = e-154, Method: Compositional matrix adjust. Identities = 266/293 (90%), Positives = 272/293 (92%), Gaps = 2/293 (0%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLK 60 MNNNDLVAKLWKLCDNLRDGGVSYQNY NELASLLFLKMCKETGQEA+YLPEGYRWDDLK Sbjct: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYANELASLLFLKMCKETGQEADYLPEGYRWDDLK 60 Query: 61 SRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAH 120 SRI QEQLQFYRKMLVHLGED KKLVQAVFHNV TTITEPKQIT LVSNMDSLDWY+G Sbjct: 61 SRIDQEQLQFYRKMLVHLGEDKKKLVQAVFHNVCTTITEPKQITELVSNMDSLDWYSGTR 120 Query: 121 GKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAG 180 GKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAG Sbjct: 121 GKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAG 180 Query: 181 FLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDH 240 FLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDH Sbjct: 181 FLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDH 240 Query: 241 GGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNI-TRTFVHPTSNK-QLC 291 GGAIRLGNTLGSDGENLP+A IVATNPPFGSAA + + P +N LC Sbjct: 241 GGAIRLGNTLGSDGENLPQADIVATNPPFGSAAAPTLPAPSCTRPATNSFALC 293 >UniRef50_C9P2L7 Type I restriction-modification system DNA-methyltransferase subunit M n=1 Tax=Vibrio metschnikovii CIP 69.14 RepID=C9P2L7_VIBME Length = 510 Score = 506 bits (1304), Expect = e-142, Method: Compositional matrix adjust. Identities = 259/525 (49%), Positives = 348/525 (66%), Gaps = 36/525 (6%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLK 60 M ++++ K+W LC+ LR G++Y YV+EL+ LLFLK+ +E G E + +P+GYRW DL+ Sbjct: 1 MKQDNIIQKIWSLCNILRGDGITYYQYVSELSYLLFLKIAQENGSE-KLIPKGYRWVDLE 59 Query: 61 SRIGQEQLQFYRKMLVHLGED-DKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGA 119 S G L FY++ML HLG + ++V+A++ +T + + + A++ + ++W Sbjct: 60 SYKGDGLLGFYQEMLTHLGASVENEVVKAIYAFPTTVFSHSENLKAVIDGISKIEW---- 115 Query: 120 HGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTA 179 H +D FGD+Y GL+ K+A +T+SGAGQYFTPR L+ TI+ L++P E++QDPA G+ Sbjct: 116 HQVGKDGFGDVYSGLIDKSAQDTRSGAGQYFTPRSLVNTIVRLIQPNLGELIQDPATGSG 175 Query: 180 GFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLD 239 GFL+ AD Y++++ + + +Q G+E+ TRR+ LMN LH+++ N+ Sbjct: 176 GFLVSADSYIRNKYLR-EKYKANPPKYQ------GVEIEKNTRRICLMNTFLHELDANII 228 Query: 240 HGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTN--ITRTFVHPTSNKQLCFMQHII 297 +G A L D L +A ++ NPPFG+ AG + P NKQL F+QHI Sbjct: 229 YGDA------LTDDVAELAEADVIIANPPFGNKAGGQRPLRNDIPFPNVNKQLAFLQHIY 282 Query: 298 ETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFF 357 L PGGRAAVV+PDNVLFE G GT++RRDLM+KC+LHTILRLPTGIFYAQGV TNVLFF Sbjct: 283 LGLKPGGRAAVVLPDNVLFEAGVGTEVRRDLMNKCNLHTILRLPTGIFYAQGVNTNVLFF 342 Query: 358 TKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPF-------------TDEHLQPFERV 404 TKG+V + Q+++CT +VWVYDLRTNMPSFGKRTPF TD H+ FE+V Sbjct: 343 TKGSVKDKYQEESCTQNVWVYDLRTNMPSFGKRTPFGNSDIGFTPEELGTDPHMGAFEKV 402 Query: 405 YGEDPHGLSPRTEGEWSFNAEETEVADS--EENKNTDQHLATSRWRKFSREWIRTAKSDS 462 +G+ P G S RTEGE+SF A+E EV EEN+ D LA SRWR FSR+WI K DS Sbjct: 403 FGDKPDGTSKRTEGEFSFGAQEIEVDKDAVEENQRGDDRLAHSRWRCFSRKWIANTKGDS 462 Query: 463 LDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALMREL 507 LDISWLKDK+SID L EPDVLA EA EL AL ELD L+ L Sbjct: 463 LDISWLKDKNSIDVTGLSEPDVLAQEAKEELEAALRELDGLLTAL 507 >UniRef50_B0VPS9 DNA methylase M, host modification n=3 Tax=Proteobacteria RepID=B0VPS9_ACIBS Length = 509 Score = 496 bits (1277), Expect = e-139, Method: Compositional matrix adjust. Identities = 247/502 (49%), Positives = 340/502 (67%), Gaps = 34/502 (6%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLK 60 M + ++ K+W LC+ LR G++Y YV+EL+ LLFLK+ +E G E +PEGYRW DL+ Sbjct: 1 MKQDTVIQKIWSLCNILRGDGITYYQYVSELSYLLFLKIAQENGSEI-LIPEGYRWADLE 59 Query: 61 SRIGQEQLQFYRKMLVHLGED-DKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGA 119 + + L FY++ML HLG + + ++++ ++ +T + + + A++ + ++W Sbjct: 60 AHEEEGLLGFYQEMLTHLGANVENEVIRDIYAFPTTVFSHSENLKAVIDGISEIEW---- 115 Query: 120 HGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTA 179 H +D FGD+Y GL+ K+A +T+SGAGQYFTPR LI +II L++P +++QDPA G+ Sbjct: 116 HQVGKDGFGDLYSGLIDKSAQDTRSGAGQYFTPRSLINSIIRLIQPNLGDLIQDPATGSG 175 Query: 180 GFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLD 239 GFL+ AD Y++++++ ++ +Q G+E+ TRR+ LMN LH ++ N+ Sbjct: 176 GFLVSADSYIRTKSSQ-EEYQASPPKYQ------GVEIEKNTRRICLMNTFLHHLDANIV 228 Query: 240 HGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTN--ITRTFVHPTSNKQLCFMQHII 297 +G A L D L I+ NPPFG+ AG+ + P +NKQL F+QHI Sbjct: 229 YGDA------LTDDVLKLDDPDIILANPPFGNKAGSQRPLRSDLPFPNTNKQLAFLQHIY 282 Query: 298 ETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFF 357 +L GGRAAVV+PDNVLFE G GTD+R+DLM+KC+LHTILRLPTGIFYAQGVKTNVLFF Sbjct: 283 LSLKAGGRAAVVLPDNVLFESGIGTDVRKDLMNKCNLHTILRLPTGIFYAQGVKTNVLFF 342 Query: 358 TKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPF-------------TDEHLQPFERV 404 TKG+ + +Q +NCT++VW+YDLRTNMPSFGKRTPF TD HL FERV Sbjct: 343 TKGSTKDKHQQENCTENVWIYDLRTNMPSFGKRTPFGNADIGFLPEDFGTDSHLGAFERV 402 Query: 405 YGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLD 464 +G++P+G S RTEGE+SFNA E EV EN+N D+ LA SRWR FSREWI K DSLD Sbjct: 403 FGDNPNGTSKRTEGEYSFNALEAEVDKELENENIDEKLAHSRWRCFSREWIAEYKGDSLD 462 Query: 465 ISWLKDKDSIDADSLPEPDVLA 486 ISWLKDK+SIDAD+L EP +L Sbjct: 463 ISWLKDKESIDADNLTEPAILV 484 >UniRef50_Q210J9 N-6 DNA methylase n=5 Tax=Proteobacteria RepID=Q210J9_RHOPB Length = 489 Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust. Identities = 255/519 (49%), Positives = 324/519 (62%), Gaps = 46/519 (8%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLKS 61 D+VAKLW LC LRD GV+Y YV EL LLFLKM +ETG+E+ LP+GYRW L Sbjct: 3 TTTDIVAKLWSLCHVLRDDGVTYNEYVTELTFLLFLKMLEETGKESR-LPKGYRWAALAK 61 Query: 62 RIGQEQLQFYRKMLVHLGEDDKK--LVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGA 119 R G +QL +Y+++L+ LG+ + K LV+A+F + T + +P + AL S++D LDW++ Sbjct: 62 REGLDQLDYYKRLLLDLGKPEVKDGLVRAIFTDAQTRLRKPTNLKALTSSIDQLDWFSA- 120 Query: 120 HGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTA 179 + G +YEGLL+KNA++ KSGAGQYFTPRPLI I+ L+KP E VQDPAAGTA Sbjct: 121 ---REEGLGTLYEGLLEKNASDKKSGAGQYFTPRPLIDCIVRLMKPHVGETVQDPAAGTA 177 Query: 180 GFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLD 239 GF++ ADRY+K +T+DL L FQ H AF G ELVP T RL +MN LLH IE Sbjct: 178 GFIVAADRYIKDRTDDLYKLPEQQVFFQRHHAFNGAELVPDTHRLCMMNLLLHGIE---- 233 Query: 240 HGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAG----TNITRTFVHPTSNKQLCFMQH 295 G + L +TL DGE L KA ++ TNPPFG+ G T + TSNKQL F++H Sbjct: 234 --GGVELADTLSPDGERLSKADLILTNPPFGTKKGGGRPTRSDFSITADTSNKQLAFVEH 291 Query: 296 IIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVL 355 ++ L GGRAAVVVPDNVLFE G D+R LMD C LHTILRLPTGIFYAQGVKTNVL Sbjct: 292 VVRALKAGGRAAVVVPDNVLFEDNTGRDLRTWLMDLCSLHTILRLPTGIFYAQGVKTNVL 351 Query: 356 FFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPR 415 FF +G DK T VWVYDLR NMP+FGK P T FE+ YG +P G + R Sbjct: 352 FFQRG-----KTDKANTKTVWVYDLRANMPAFGKTRPLTAADFAEFEKAYGSNPAGSAKR 406 Query: 416 TEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSID 475 + EE RWR F+R+ I+ A++D+LDISWL+D + Sbjct: 407 KD-----QGEE------------------GRWRGFTRDQIK-ARNDNLDISWLRDTEVEA 442 Query: 476 ADSLPEPDVLAAEAMGELVQALSELDALMRELGASDEAD 514 + L EP+ +AA +G L AL E++ L EL + D Sbjct: 443 EEQLTEPEDIAAAIIGHLKAALEEIETLSEELESPSNKD 481 >UniRef50_C4KDM7 Site-specific DNA-methyltransferase (Adenine-specific) n=9 Tax=Bacteria RepID=C4KDM7_THASP Length = 530 Score = 466 bits (1199), Expect = e-130, Method: Compositional matrix adjust. Identities = 266/542 (49%), Positives = 336/542 (61%), Gaps = 66/542 (12%) Query: 5 DLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYL-------------- 50 D+ AKLW LC LRD GV+Y Y++EL LLFLKM KETGQE Sbjct: 9 DIGAKLWSLCHVLRDDGVTYHQYLSELTYLLFLKMMKETGQEERLRIWKAKDKKQGSPKE 68 Query: 51 -PEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSN 109 G RWDDL ++L Y++ML+ G + VQ ++ N +T IT+P ++ LV++ Sbjct: 69 EQAGTRWDDLLGASAPDRLDLYKEMLLDYGLHGRGAVQEIYANANTFITKPATLSKLVTD 128 Query: 110 MDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPRE 169 +D LDWY+ RDD GD+YE LL++NA E KSGAGQYFTPR LI +I+ ++KPQ + Sbjct: 129 IDRLDWYS----VDRDDLGDLYEDLLERNAGEKKSGAGQYFTPRHLIDSIVSVMKPQLGD 184 Query: 170 VVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNC 229 V+QDPAAGT GFLI A+ Y++ Q ND D L + Q H+ F G+ELV T RLALMN Sbjct: 185 VIQDPAAGTCGFLIAANNYLR-QHNDFDSLSDEAQRKYRHQTFHGMELVQDTHRLALMNM 243 Query: 230 LLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNI-TR-TFVHPTSN 287 LLH IEG + +G +TL D + LP A ++ +NPPFG+ G + TR TSN Sbjct: 244 LLHGIEGGVTYG------DTLSDDHKGLPPATLILSNPPFGTKKGGGLPTRGDLTFETSN 297 Query: 288 KQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYA 347 KQ F+QHI L PGGRAAVV+PDNVLFE G DIRRDLMDKC+LHTILRLPTGIFYA Sbjct: 298 KQFAFLQHIYRALKPGGRAAVVLPDNVLFESNIGADIRRDLMDKCNLHTILRLPTGIFYA 357 Query: 348 QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHL--------- 398 QGVKTNVLFFT+G + DK T +VWVYD+R NMP+FGKRTPFT ++ Sbjct: 358 QGVKTNVLFFTRG-----DTDKGNTKEVWVYDMRANMPAFGKRTPFTRDYFRTPPDVPAS 412 Query: 399 QP---FERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWI 455 QP FE V+G DP G G + A + D+ E RWR+F+RE I Sbjct: 413 QPRDKFEDVFGSDPRG------GPAALAARQ----DTGE---------AGRWRRFTREQI 453 Query: 456 RTAKSDSLDISWLKDKDSIDAD-SLPEPDVLAAEAMGELVQALSELDALMRELGASDEAD 514 + DSLDISWLKD + D S +P +LA A+ EL A+SEL +L+ ELG +A Sbjct: 454 -AQRGDSLDISWLKDSGAASTDQSRDDPSLLAGLALKELNAAVSELRSLLEELGEDPDAV 512 Query: 515 LQ 516 L+ Sbjct: 513 LE 514 >UniRef50_C6CZ62 N-6 DNA methylase n=16 Tax=Bacteria RepID=C6CZ62_PAESJ Length = 494 Score = 456 bits (1174), Expect = e-127, Method: Compositional matrix adjust. Identities = 251/513 (48%), Positives = 316/513 (61%), Gaps = 50/513 (9%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLK 60 M N D+V KLW LC+ LRD G++Y YV EL +LFLKM KET E LPE YRWD L Sbjct: 1 MGNQDIVQKLWNLCNVLRDDGITYHQYVTELTYVLFLKMMKETDNEG-ILPEQYRWDSLT 59 Query: 61 SRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAH 120 R G Q YR++L+ LG + ++ ++ N ++ I EPK + +++++D LDWY+ Sbjct: 60 ERHGMALQQHYRQLLLDLGNQGNETIKQIYMNATSNINEPKNLEKIITSIDQLDWYSA-- 117 Query: 121 GKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAG 180 + GD+YEGLL+KNA+ETKSGAGQYFTPRPLI I L+ PQP E DPAAGT G Sbjct: 118 --KEEGLGDLYEGLLEKNASETKSGAGQYFTPRPLIDVITKLVDPQPGERCNDPAAGTFG 175 Query: 181 FLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDH 240 F+I ADR+V++ T+D DL +FQ H+AF G+ELV T RLA+MN +LHDI G Sbjct: 176 FMIAADRHVRNNTDDYFDLGEKEAEFQKHQAFTGVELVKDTHRLAMMNAMLHDIHGE--- 232 Query: 241 GGAIRLGNTLGSDGENLPKAHIVATNPPFGSA-AGTNITR-TFVHPTSNKQLCFMQHIIE 298 I LG+TL DG NL ++ TNPPFG+ G TR T+NKQL F+QHI Sbjct: 233 ---IILGDTLSDDGTNLKNFDVILTNPPFGTKQGGERPTRDDLTFATTNKQLNFLQHIYR 289 Query: 299 TLHPGG--RAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLF 356 L G RAAV++PDNVLFE G GT IR DLMDKC+L+TILRLPTGIFYAQGVKTNVLF Sbjct: 290 ALKANGKARAAVILPDNVLFESGVGTKIRADLMDKCNLNTILRLPTGIFYAQGVKTNVLF 349 Query: 357 FTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRT 416 FT+ DK+ T ++WVYDLRTNMPSFGKR P T H F Y + Sbjct: 350 FTR-----EKTDKDSTKNIWVYDLRTNMPSFGKRNPLTVSHFDAFVAAYMAE-------- 396 Query: 417 EGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDA 476 + T+V D RW F+RE IR K DSLDI + D+ Sbjct: 397 --------DRTKVED-------------ERWNVFTREDIR-KKDDSLDIGLIADESLSAY 434 Query: 477 DSLPEPDVLAAEAMGELVQALSELDALMRELGA 509 D+LP+P A +AM +L +AL+ L ++ EL A Sbjct: 435 DNLPDPIDSAEDAMVKLEEALALLGEVVTELKA 467 >UniRef50_C3MFA0 N-6 DNA methylase n=5 Tax=Proteobacteria RepID=C3MFA0_RHISN Length = 511 Score = 452 bits (1163), Expect = e-125, Method: Compositional matrix adjust. Identities = 254/541 (46%), Positives = 327/541 (60%), Gaps = 71/541 (13%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLK 60 MN N +V KLW+LC LR G++YQ YV EL LLFLKM E +E+ LPE RW+DL Sbjct: 1 MNANAIVQKLWRLCTVLRKDGITYQQYVTELTYLLFLKMMAERNRESGSLPETMRWEDLV 60 Query: 61 SRIGQEQLQFYRKMLVHLGE---------------------DDKK----------LVQAV 89 G +L+ YR+ LV LG D++K +VQ + Sbjct: 61 QANGLAKLELYRRTLVTLGTVSTRLGKDDALVLPPGDNATPDERKRYVDARPLPDMVQEI 120 Query: 90 FHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQY 149 F N ST I EP+ +T LV+ +D LDW++ + RD FGD+YEGLLQKNA ETK GAGQY Sbjct: 121 FDNASTFIREPQNLTTLVTAIDELDWFS----EERDQFGDLYEGLLQKNAEETKRGAGQY 176 Query: 150 FTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIH 209 FTPR LI+ ++ L++PQP EV+QDPA GT GFLI AD Y++++T++ DL Q+FQ Sbjct: 177 FTPRVLIRVLVRLMQPQPGEVIQDPAGGTGGFLIAADHYMRARTDNYFDLGEKEQEFQKR 236 Query: 210 RAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPF 269 AF G+E VPGT RL LMN LHDI+ DH + LG+TL G+ L +A+++ TNPPF Sbjct: 237 HAFHGMENVPGTLRLLLMNLYLHDIDS--DH---VDLGDTLSDKGKGLGRANLILTNPPF 291 Query: 270 GSAAG--TNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRD 327 G A G T + S+ QL F++H I L PGGRAA+VVPDNVLFE G+G +R+ Sbjct: 292 GPAGGAPTRDDLSVTATVSSYQLPFVEHCIRALKPGGRAAIVVPDNVLFEDGRGRQLRQM 351 Query: 328 LMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSF 387 +MD C LHTILRLPTGIFYAQGVKTNV+F T+G N T W+YDLR MP F Sbjct: 352 MMDWCDLHTILRLPTGIFYAQGVKTNVIFLTRGKTETGN-----TKATWIYDLRAQMPKF 406 Query: 388 GKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRW 447 GK TP T+ H + FE+ +G P+G + V D E RW Sbjct: 407 GKTTPLTEAHFEGFEKAFGTSPYG--------------KERVKDEGE---------VGRW 443 Query: 448 RKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALMREL 507 R+F RE I A+ D+LDI+WL++ D D L EP+ +AA +G L A E++ALM EL Sbjct: 444 REFRREEI-AARGDNLDIAWLREADDEAEDGLTEPEDIAAAILGHLQAATLEIEALMAEL 502 Query: 508 G 508 G Sbjct: 503 G 503 >UniRef50_UPI0001C36A8B N-6 DNA methylase n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36A8B Length = 471 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 237/486 (48%), Positives = 301/486 (61%), Gaps = 51/486 (10%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLK 60 MN ++V+KLW LC+ LRD G++Y YV EL +LFLKM KETG E E +PE YRWD L Sbjct: 1 MNTQEIVSKLWNLCNVLRDDGITYHQYVTELTYILFLKMAKETGVE-EQIPEEYRWDCLV 59 Query: 61 SRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAH 120 S+ G E ++YR++L +LGE+ +Q ++ +T I EPK + +++ +D LDWY+ Sbjct: 60 SKSGMELRRYYRELLNYLGEECTGRIQEIYQGAATNIDEPKNLEKIITAIDKLDWYSA-- 117 Query: 121 GKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAG 180 + G++YEGLL+KNANE KSGAGQYFTPR LI ++ L+KPQ E DPA GT G Sbjct: 118 --KEEGLGNLYEGLLEKNANEKKSGAGQYFTPRVLIDVMVRLMKPQVGERCNDPACGTFG 175 Query: 181 FLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDH 240 F+I AD+YVK ND + D +FQ AF G ELV T RLALMN +LHDIEG Sbjct: 176 FMIAADKYVKEH-NDFWGISADLAEFQHKEAFTGCELVHETHRLALMNAMLHDIEGQ--- 231 Query: 241 GGAIRLGNTLGSDGENLPKAHIVATNPPFGS-AAGTNITRT-FVHPTSNKQLCFMQHIIE 298 I L +TL + G+ L +V TNPPFG+ G TR FV TSNKQL F+QHI Sbjct: 232 ---IMLADTLSNAGKQLKGYDLVLTNPPFGTEKGGERATRDDFVFSTSNKQLNFLQHIYR 288 Query: 299 TLHPGG--RAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLF 356 +L P G RAAVV+PDNVLF G G IR DLM++C+LHT+LRLPTGIFYAQGVKTNVLF Sbjct: 289 SLKPNGKARAAVVLPDNVLFADGDGERIRVDLMERCNLHTVLRLPTGIFYAQGVKTNVLF 348 Query: 357 FTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRT 416 FT+GT DK+ T +VW YDLRTNMPS GK P EH FE+ Y Sbjct: 349 FTRGTT-----DKDNTKEVWFYDLRTNMPSLGKTNPLKTEHFADFEKAY----------- 392 Query: 417 EGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDA 476 A++ + E RW F+RE I AK +SLD+ ++D +D Sbjct: 393 ------EADDRRAVNDE------------RWSVFTREEI-VAKGNSLDLGLIRDDSVLDY 433 Query: 477 DSLPEP 482 + LP+P Sbjct: 434 NDLPDP 439 >UniRef50_A8YW15 Type I restriction modification system n=8 Tax=Bacteria RepID=A8YW15_LACH4 Length = 484 Score = 423 bits (1087), Expect = e-117, Method: Compositional matrix adjust. Identities = 227/515 (44%), Positives = 321/515 (62%), Gaps = 50/515 (9%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLK 60 M N ++V KLW C+ LRD GVSYQ+Y+ EL +LFLKM KE +E + +PE YRWD+L Sbjct: 1 MTNQEIVQKLWNECNVLRDDGVSYQDYITELTYILFLKMSKEQDEEKD-IPEKYRWDNLV 59 Query: 61 SRIGQEQLQFYRKMLVHLGEDD---KKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYN 117 ++ G E FYR++L+ LG + + + A++ N ST I EP + ++ +++ LDW++ Sbjct: 60 NKEGLELKNFYRQLLLDLGNPEVVKSERINAIYANASTAIDEPANLEKIIKDINDLDWWS 119 Query: 118 GAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAG 177 + GD+YEGL++KNANE KSGAGQYFTPR LI ++ + KP+ + DPAAG Sbjct: 120 ARE----EGLGDLYEGLMEKNANEVKSGAGQYFTPRVLINMMVKMTKPKIGDRCNDPAAG 175 Query: 178 TAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN 237 T GF++ AD+Y+K +T+D +L + DFQ+ AF G+ELVP T RLA+MN LH ++G Sbjct: 176 TFGFMVAADQYLKDKTDDYSELSEEKYDFQVKEAFSGMELVPNTHRLAIMNEYLHGMDGR 235 Query: 238 LDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGS-AAGTNITR-TFVHPTSNKQLCFMQH 295 L+ G++L ++G+ + +V TNPPFG+ G +TR + TSNKQL F+Q Sbjct: 236 LEQ------GDSLSANGKWMKNFDVVLTNPPFGTKKGGERVTRDDLTYETSNKQLNFLQI 289 Query: 296 IIETLHPGG--RAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTN 353 I +L G RAAVVVPDNVLF G G +IR+DL++KC+LHTILRLPTGIFYAQGV+TN Sbjct: 290 IYNSLKRDGKARAAVVVPDNVLFADGVGEEIRKDLLNKCNLHTILRLPTGIFYAQGVQTN 349 Query: 354 VLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLS 413 VLFFT+G +DK+ T + W+YD+R M SFGKR P D+ FE+++ D Sbjct: 350 VLFFTRG-----EEDKDNTKETWIYDMRHQMRSFGKRNPLNDKDFVEFEKLFCVDDR--- 401 Query: 414 PRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDS 473 ++ E D E+N N RWRKF+ + I+ + SLDISW+ D++ Sbjct: 402 ----------SKRKETWDKEKNPN-------GRWRKFTIDEIKKRPNTSLDISWMSDEEE 444 Query: 474 IDADSLP-------EPDVLAAEAMGELVQALSELD 501 + SL E +EA+ EL +AL +D Sbjct: 445 HETKSLKEILSDMNEKSKAISEAIAELNKALEGID 479 >UniRef50_Q1MKB0 Putative type I restriction enzyme modification methylase subunit n=1 Tax=Rhizobium leguminosarum bv. viciae 3841 RepID=Q1MKB0_RHIL3 Length = 411 Score = 357 bits (917), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 198/400 (49%), Positives = 252/400 (63%), Gaps = 42/400 (10%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLK 60 MN N +V KLW+LC LR G++YQ YV EL LLFLKM E +E LP RW DL Sbjct: 1 MNANAIVQKLWRLCTVLRKDGITYQQYVTELTYLLFLKMMAERNRETGSLPRSMRWADLV 60 Query: 61 SRIGQEQLQFYRKMLV-------HLGEDDK------------------------KLVQAV 89 G +L+ YRK LV LG+DD ++VQ + Sbjct: 61 QANGLAKLELYRKTLVTLGTVSTRLGKDDALVLPPGENATPDERKRYADARPLPEMVQEI 120 Query: 90 FHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQY 149 F N ST I EP+ +T LV+ +D LDW++ + RD FGD+YEGLLQKNA ETK GAGQY Sbjct: 121 FDNASTFIREPQNLTTLVTAIDELDWFS----EDRDQFGDLYEGLLQKNAEETKRGAGQY 176 Query: 150 FTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIH 209 FTPR LI+ ++ L++P+P EV+QDPAAGT GFLI ADRY+++ T++ DL Q+FQ Sbjct: 177 FTPRVLIELLVRLMQPKPGEVIQDPAAGTGGFLIAADRYMRAVTDNYFDLGRKQQEFQKR 236 Query: 210 RAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPF 269 AF G+E VPGT RL LMN LH+I+ DH + LG+TL G+ L +A+++ TNPPF Sbjct: 237 HAFHGMENVPGTLRLLLMNLYLHNIDS--DH---VDLGDTLSDKGKGLGRANLILTNPPF 291 Query: 270 GSAAG--TNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRD 327 G A G T + S+ QL F++H I L PGGRAA+VVPDNVLFE G+G +R+ Sbjct: 292 GPAGGAPTRDDLSVTATVSSYQLPFVEHCIRALQPGGRAAIVVPDNVLFEDGRGRQLRQM 351 Query: 328 LMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQ 367 +MD C +HTILRLPTGIFYAQGVKTNV+F T+ Q Sbjct: 352 MMDWCDVHTILRLPTGIFYAQGVKTNVIFLTRAKTETGTQ 391 >UniRef50_D1C5W3 N-6 DNA methylase n=39 Tax=cellular organisms RepID=D1C5W3_SPHTD Length = 507 Score = 324 bits (830), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 208/531 (39%), Positives = 280/531 (52%), Gaps = 64/531 (12%) Query: 6 LVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA----EYLPEGYRWDDLKS 61 +V +LW C+ LRD G+SY +YV +L LLFLKM E QE +PEGY W L + Sbjct: 10 IVQRLWSYCNVLRDDGLSYGDYVEQLTYLLFLKMAHEQTQEPWNRPSPVPEGYDWPSLLA 69 Query: 62 RIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNM-DSLDWYNGAH 120 R G E YR +L LG ++ +FH I +P ++ L+ ++ D W Sbjct: 70 RDGDELETHYRHLLEELGRQ-PGMLGLIFHKAQNKIQDPAKLRRLIVDLIDREQWMV--- 125 Query: 121 GKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAG 180 D G YEGLL+KNA + K GAGQYFTPRPLI+ I+ +++PQP E + DPA GT G Sbjct: 126 -LGTDAKGATYEGLLEKNARDVKGGAGQYFTPRPLIQAIVDVMRPQPGETICDPACGTGG 184 Query: 181 FLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI---EGN 237 FL+ A + + LD + ++H A G+E+V RL MN LLH + Sbjct: 185 FLLAAHNSIVERYPHLDP--EQRKHLKLH-ALRGVEIVDSVTRLCAMNLLLHGVGPGPAE 241 Query: 238 LDHGGAIRLGNTLGSDGENLPKAH--IVATNPPFGSAAG---------------TNITRT 280 D +R G++L S P H +V TNPPFG + T + Sbjct: 242 ADIEPPVRTGDSLNS----APSDHFDVVLTNPPFGRKSSVLVVNEEGQQEREALTVVRED 297 Query: 281 FVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRL 340 F TSNKQL F+QH+ L GRAAVVVPDNVLFEGG G IRR L+ +C +HT+LRL Sbjct: 298 FWATTSNKQLNFVQHVKSLLKIHGRAAVVVPDNVLFEGGAGETIRRKLLQECDVHTLLRL 357 Query: 341 PTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQP 400 PTGIFYAQGVK NVLFF + P +++ T +W+YDLRTN K P L Sbjct: 358 PTGIFYAQGVKANVLFFDR----KPPREQPWTSQLWIYDLRTNKHFTLKTKPLQRSDLDE 413 Query: 401 FERVYG-EDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAK 459 F + E+ H +P W SEEN + RWR FS + + Sbjct: 414 FVACFNPENRHQRTP----TW-----------SEENPD-------GRWRAFSYDELIQRD 451 Query: 460 SDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALMRELGAS 510 +LDI WLKDK D ++L +PD +AA+ + +L AL E + ++ +L + Sbjct: 452 KVNLDIFWLKDKSLEDGENLGDPDEIAADIVEDLRAALEEFETILADLAPN 502 >UniRef50_A3XPV4 Type I restriction-modification system specificity subunit n=2 Tax=cellular organisms RepID=A3XPV4_9FLAO Length = 513 Score = 312 bits (799), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 197/540 (36%), Positives = 277/540 (51%), Gaps = 71/540 (13%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQ----EAEYLP----- 51 M ++ +++K+W L LRD GV Y +Y+ ++ LLFLKM E + + P Sbjct: 1 MTDSTIISKIWNLASVLRDDGVGYGDYLEQITYLLFLKMADELNKPPYNKGLKFPKLKDV 60 Query: 52 --------EGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQI 103 E W+ L + G E FY ++L L + K ++ +F I +P ++ Sbjct: 61 DGNEIQDGETCDWETLSGKRGAELESFYSQLLRSLSTE-KGMLGQIFTKSQNKIQDPAKL 119 Query: 104 TALVSNMDSLDW-YNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHL 162 ++ +D DW GA K G +YEGLLQKNA +TKSGAGQYFTPR LI+ I+ Sbjct: 120 LKVIDMIDREDWNMMGADIK-----GKIYEGLLQKNAEDTKSGAGQYFTPRSLIQAIVAC 174 Query: 163 LKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTR 222 ++PQP++ + DPA GT GF + A ++ LD + + F + F G E+V TR Sbjct: 175 VQPQPKKTIADPACGTGGFFLAAYDWIVEHHK----LDKEEKQFLKNNTFHGNEIVANTR 230 Query: 223 RLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNIT---- 278 R+ +MN LH+I G +D I + L +D + + V NPPFG + IT Sbjct: 231 RMCIMNMYLHNI-GEIDGEPFINPNDALIAD--DGKRFDYVLANPPFGKKSSMTITNEEG 287 Query: 279 -----------RTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRD 327 + F +SNKQL F+QHI L G+AAVV+PDNVLFEGG G ++R+ Sbjct: 288 EQEKEDLSYNRQDFWETSSNKQLNFLQHIKTQLKINGKAAVVLPDNVLFEGGAGEEVRKQ 347 Query: 328 LMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSF 387 L+ LHTILRLPTGIFY GVK NVLFF P + T ++W YD RTN+ Sbjct: 348 LLKTADLHTILRLPTGIFYRPGVKANVLFFKN----KPASKEAWTREIWFYDYRTNVHHT 403 Query: 388 GKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRW 447 K+ P L+ F ++Y + ++ R E WS EE RW Sbjct: 404 LKKKPMLLSDLEEFIKLY--NSSNINNRKE-TWSKENEE------------------GRW 442 Query: 448 RKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALMREL 507 RK++ E I SLDI WLKDK D D+LP+PD+LA E + + L+ +M L Sbjct: 443 RKYTYEDIIARDKTSLDIFWLKDKSLTDLDNLPDPDILAVEIIENIEAGLNSFKEIMETL 502 >UniRef50_Q7VG99 Type I restriction-modification system n=2 Tax=Bacteria RepID=Q7VG99_HELHP Length = 475 Score = 298 bits (763), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 196/520 (37%), Positives = 263/520 (50%), Gaps = 65/520 (12%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEY--LPEGYRWDD 58 M+ +VAK+W LRD GVSY YV +L+ LLFLKM E E+ +P +W+ Sbjct: 1 MSEKAIVAKVWNFATILRDSGVSYTEYVAQLSYLLFLKMESERESIGEHSKIPTSCKWER 60 Query: 59 LKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNG 118 L + G E Y L L + + ++ V+++ I EP + L MDS W Sbjct: 61 LINLDGLELESAYNAALAQLAKSEG-VIGLVYNDAQNKIKEPANLKKLFVLMDSETWL-- 117 Query: 119 AHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGT 178 G + D G +YEGLL KNA ETK+GAGQYFTPR LI +I+ L++ +P V DPA GT Sbjct: 118 --GLNVDVKGAIYEGLLAKNATETKAGAGQYFTPRVLIDSIVGLMELKPNMEVCDPACGT 175 Query: 179 AGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNL 238 GFL+ A +K+QT D +++ + G ++ P L MN LH I G Sbjct: 176 GGFLLSAYEAMKAQTKDKEEIKCLRNE-----RLCGKDITPLVASLCAMNLYLHGIGGEG 230 Query: 239 DHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNIT---------------RTFVH 283 + LG+ + V TNPPFG + T I F Sbjct: 231 GIIEIGDSLSELGNR-----RFDRVLTNPPFGKKSATKILAENGKVKSQKDEYNREDFFA 285 Query: 284 PTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTG 343 TSNKQL F+QHI+ L GG+AAVV+PDNVLFE G G +R+ L++ +LHTILRLPTG Sbjct: 286 TTSNKQLNFLQHIMNLLKIGGKAAVVLPDNVLFEAGAGEKVRKKLLEDFNLHTILRLPTG 345 Query: 344 IFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFER 403 IFYAQGVK NVLFF K + ++ T VWVYD+RTNM +P + EHL+ FE Sbjct: 346 IFYAQGVKANVLFFDKVATS-----EDSTQKVWVYDMRTNMNLSLVTSPLSAEHLREFES 400 Query: 404 VYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSL 463 + + R E E R+R FS I+ +L Sbjct: 401 CFC--VGAMENRKESE--------------------------RFRSFSIGEIKKRDKMNL 432 Query: 464 DISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDAL 503 DI WLKD+ D ++LP P L+ + L AL E++ L Sbjct: 433 DIFWLKDESLEDLENLPSPKDLSEQICISLKNALREIEQL 472 >UniRef50_B5H9V2 N-6 DNA methylase n=1 Tax=Streptomyces pristinaespiralis ATCC 25486 RepID=B5H9V2_STRPR Length = 519 Score = 282 bits (721), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 194/548 (35%), Positives = 271/548 (49%), Gaps = 87/548 (15%) Query: 9 KLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLP--------------EGY 54 +LW C+ LRD GVS NY+ +L+ L+FLKM ET Q + P +G Sbjct: 3 RLWNYCNVLRDDGVSASNYLEQLSLLVFLKMADETEQLNAHRPSADHEHMLPTAPEWQGR 62 Query: 55 RWDDLKSRIGQEQLQFYRKMLVHLG----EDDKKLVQAVFHNVSTTITEPKQITALVSNM 110 W +L G + Y K+L+ LG ++D + +F+ I P + L+ ++ Sbjct: 63 GWPELIDLEGDPLEEAYSKLLIDLGRRTDQNDHTTLSLIFNRARNHIENPTHLRRLIVDL 122 Query: 111 -DSLDWYNGAHGKSRDDF-GDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPR 168 D W N SR D G YE L+ ++A++TK+GAGQYFTPR LI++I+ ++P P Sbjct: 123 IDKEKWRN-----SRSDINGAAYEALIARSASDTKAGAGQYFTPRALIESIVRCMRPTPY 177 Query: 169 EVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHR----AFIGLELVPGTRRL 224 + + DPA GT GFLI A Y+ + D D D +HR + G E+VP T RL Sbjct: 178 DTITDPACGTGGFLIAAYEYITREYGD------DLPDEDLHRLRTESIWGHEIVPATARL 231 Query: 225 ALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNIT------ 278 A MNCLLH + G+ I +G+ L E A +V NPPFG +G N++ Sbjct: 232 AAMNCLLHSL-GDPTGEPIIDVGDALAKPPER--HASLVLANPPFGRKSGINVSGKEAEA 288 Query: 279 -------RTFVHP--------TSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTD 323 T+ P T+NKQL F+QHI L GRAAV+VPD VL+EGG G+ Sbjct: 289 EADDRDNVTYNRPDFWVGEQTTTNKQLNFLQHIGTQLTDKGRAAVIVPDGVLYEGGAGSV 348 Query: 324 ---IRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDL 380 +RR+L+ +LHT+LRLP IFYA GVK +VLFF + D T VW YDL Sbjct: 349 GDLVRRELLTGYNLHTMLRLPENIFYAGGVKAHVLFFEAVPGHRADDDPPHTTYVWTYDL 408 Query: 381 RTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQ 440 RT+ K+ P EHL FE+ A + D + K +D Sbjct: 409 RTDSRFTLKKNPMKPEHLADFEK-------------------QAFDPSDPDRKHRKESD- 448 Query: 441 HLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSEL 500 R+R+ + + K +LDI+ L + S + D L G+L ALSE+ Sbjct: 449 -----RFRRHAAAELLAQKQVNLDIARLSPEASAAKEPTASIDALTRYVAGDLRSALSEI 503 Query: 501 DALMRELG 508 +A RELG Sbjct: 504 EAFARELG 511 >UniRef50_A8ZTW6 N-6 DNA methylase n=5 Tax=cellular organisms RepID=A8ZTW6_DESOH Length = 481 Score = 279 bits (713), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 187/519 (36%), Positives = 266/519 (51%), Gaps = 66/519 (12%) Query: 4 NDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETG-----QEAEYLPEGYR--- 55 +D+ KLW C LR G+ Y +Y+ +L L+FLKM E G E E E R Sbjct: 2 SDVANKLWGFCHTLRHDGIDYGDYIEQLTYLMFLKMAHEKGIDLSAVEYEDNQETVRLDC 61 Query: 56 -WDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLD 114 W + G + L + +L L L+ +F T P + +++ +D Sbjct: 62 SWQPFVEKSGTDLLDAFANILRALSRQ-PGLLGDIFTQAMPRFTNPVNLKKVINMIDETL 120 Query: 115 WYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPRE----V 170 W D G +EGLL+K+A E K GAGQYFTPR LI++I+ +++P PR+ Sbjct: 121 WSE----MPVDVKGAAFEGLLEKSAAEGKKGAGQYFTPRALIQSIVTVMRPDPRKQKDFT 176 Query: 171 VQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL 230 + DPA GTAGFL+ A ++ + + LD + + G ELVP RRLALMN Sbjct: 177 ICDPACGTAGFLMVAYEWLMAVSKGA--LDRKEVARIKKQTYFGQELVPRPRRLALMNLF 234 Query: 231 LHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTN--ITRTFVHPTSNK 288 LH +E + G +I + GE + + TNPPFG+ + F TSNK Sbjct: 235 LHGLEPQIYLGDSIYEPDR----GE---RYDCILTNPPFGTKGANQAPVRDDFTVSTSNK 287 Query: 289 QLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIF--Y 346 QL F+QH++ L PGGRAA+V+PDNVLF G I LM+ C++HT+LRLP G F Y Sbjct: 288 QLNFIQHVVTILKPGGRAAMVLPDNVLFADAAGEVIGY-LMEDCNVHTLLRLPNGTFSPY 346 Query: 347 AQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKR-TPFTDEHLQPFERVY 405 +QGVK NV+FF KG T+++W+YD RTN+P K+ P T FE+ Y Sbjct: 347 SQGVKANVIFFQKGVK---------TENIWIYDGRTNIPGVTKKERPLTPAMFDEFEKCY 397 Query: 406 GEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDI 465 G DP G S R +++ D R++KF+R I+ + +LDI Sbjct: 398 GPDPVGRSRR------------------KDQGDD-----GRFKKFTRSQIKD-RHYNLDI 433 Query: 466 SWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALM 504 +WL+D D +LPEP +LA EA+ EL + L ++ Sbjct: 434 AWLRDDSLEDPANLPEPHLLAGEAITELNACVDRLQEIL 472 >UniRef50_Q89Z59 Probable type I restriction enzyme BthVORF4518P M protein n=16 Tax=Bacteria RepID=T1M_BACTN Length = 472 Score = 275 bits (702), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 179/508 (35%), Positives = 253/508 (49%), Gaps = 55/508 (10%) Query: 6 LVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQ---EAEYLPEGYRWDDLKSR 62 L K+W L L G+ + +Y+ +L LLFLKM E + E +P GY+W DL + Sbjct: 11 LTKKVWNLATTLAGQGIGFTDYITQLTYLLFLKMDAENVEMFGEESAIPTGYQWADLIAF 70 Query: 63 IGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGK 122 G + ++ Y + L L E D L+ ++ I +P + +++ +D W Sbjct: 71 DGLDLVKQYEETLKLLSELDN-LIGTIYTKAQNKIDKPVYLKKVITMIDEEQWLI----M 125 Query: 123 SRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFL 182 D G +YE +L+KN + KSGAGQYFTPRPLI+ ++ + PQ E V DPA GT GFL Sbjct: 126 DGDVKGAIYESILEKNGQDKKSGAGQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFL 185 Query: 183 IEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGG 242 + A Y+K Q+ + +DF +A G++ P LA MN LH I + Sbjct: 186 LTAYDYMKGQSAS-----KEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTD---RS 237 Query: 243 AIRLGNTLGSDGENLPKAHIVATNPPFGS--AAGTNITRT-FVHPTSNKQLCFMQHIIET 299 I ++L + L ++ NPPFG+ A +I R F T N QL F+QH++ Sbjct: 238 PIVCEDSLEKEPSTL--VDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLM 295 Query: 300 LHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTK 359 L GGRAAVV+PDNVLFE G G IR+ L+ +LHTILRLPTGIFYAQGVK NVLFF+K Sbjct: 296 LKTGGRAAVVLPDNVLFEAGAGETIRKRLLQDFNLHTILRLPTGIFYAQGVKANVLFFSK 355 Query: 360 GTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGE 419 G T ++W YD RT++ HL F Y Sbjct: 356 G---------QPTKEIWFYDYRTDIKHTLATNKLERHHLDDFVSCYN------------- 393 Query: 420 WSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSL 479 E+ D+E N RWRK+ + I SLDI+W+K +D SL Sbjct: 394 -----NRVEIYDAENNPQ-------GRWRKYPVDEIIARDKTSLDITWIKPGGEVDDRSL 441 Query: 480 PEPDVLAAEAMGELVQALSELDALMREL 507 E + + +A++EL+ L+ + Sbjct: 442 AELMADIKDKSQTISRAVTELEKLLANI 469 >UniRef50_D2TNZ8 Putative type I restriction modification system HsdM component n=1 Tax=Citrobacter rodentium ICC168 RepID=D2TNZ8_CITRO Length = 500 Score = 268 bits (684), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 182/519 (35%), Positives = 261/519 (50%), Gaps = 54/519 (10%) Query: 5 DLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQ----EAEYLPEGYRWDDLK 60 D+V ++W + LRD G+S +YV +L L+FLKM E + + + WD+L Sbjct: 8 DIVNRVWGYANILRDDGISNGDYVEQLTFLIFLKMNAERVSLGKLKGNIVSDA--WDELL 65 Query: 61 SRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAH 120 G+ L Y K++ LGE + L++ +F+ I + ++ L+ ++ W + Sbjct: 66 KLSGESLLTKYSKIISQLGESEG-LLETIFYGAQNKIQDAGKLKKLILMINEEVWLSSNF 124 Query: 121 GKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAG 180 D G +YEG+LQK+A+ K GAGQYFTPR LI+ I+ + P+P + + DPA GT G Sbjct: 125 ----DVKGAIYEGILQKSADTEKKGAGQYFTPRALIEAIVEAVDPEPMQTIADPACGTGG 180 Query: 181 FLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDH 240 FL A Y+ N +D + D F + F G E+ RL MN LH+I + Sbjct: 181 FLTVAHDYI---FNKIDKNEVDKHSFLRNSTFSGNEISSSVARLCAMNLYLHEIGI---Y 234 Query: 241 GGAIRLGNTLGSDGENLPKAHIVATNPPFG--SAAGTNITRT----------FVHPTSNK 288 I + + L S K IV NPPFG S NI ++ F T+NK Sbjct: 235 SNPISVSDALESKPS--KKVDIVLANPPFGRKSTFTINIDKSKIDNKYIRDDFWVETTNK 292 Query: 289 QLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQ 348 QL F+QHI L G+AAVV PDN+LF+ G G IRR L+D+ +LHT+LRLPTGIFYAQ Sbjct: 293 QLNFLQHICNMLKKDGKAAVVFPDNILFDSGAGEKIRRKLLDEYNLHTVLRLPTGIFYAQ 352 Query: 349 GVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGED 408 GVK NVLFF ++ + T+ VW YDLRT++ K F +Y ++ Sbjct: 353 GVKANVLFFDNCI----DKKRPRTEKVWFYDLRTSIHKTFKHNKLIRSDFNEFIALYKKE 408 Query: 409 PHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWL 468 + R + WS T+V T RWR FS E I +LDI WL Sbjct: 409 --NIESR-KSTWS-----TDV--------TKYSTPNGRWRAFSYEEILLRDKANLDIQWL 452 Query: 469 KDKDSIDADSLPEPDVLAAEAMGELVQAL---SELDALM 504 K+ ++++ VL + L AL E++AL+ Sbjct: 453 KEDVFNQSENIESSPVLVDSIIELLSSALDDFREVEALL 491 >UniRef50_A7BWE8 Type I restriction enzyme StySPI M protein n=1 Tax=Beggiatoa sp. PS RepID=A7BWE8_9GAMM Length = 469 Score = 244 bits (624), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 160/512 (31%), Positives = 255/512 (49%), Gaps = 58/512 (11%) Query: 5 DLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLKSRIG 64 + KL + +L+ G+ Y+ EL LLF KM G+ +P YRW+ L + G Sbjct: 6 NFAQKLIRPAKDLQKEGLPIHAYLTELTWLLFFKMAPILGK-IHLMPSDYRWELLIQKSG 64 Query: 65 QEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSR 124 EQ +Y++++ L + + ++ + T P+Q+ +++ + +++ Sbjct: 65 IEQYNYYQEVIKILSQASDPYIAGLYAHADTFFKTPEQLAQVITTLSTIN-------IPI 117 Query: 125 DDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIE 184 +D G++YE LL++ A G + PR L+ ++ L +PQP E++QDP AGTA F++ Sbjct: 118 EDLGEVYEILLERCA--YLDGGRLHQVPRSLVDLMVILTQPQPGELIQDPLAGTASFVVA 175 Query: 185 ADRYVK------SQTNDLDDLDGDTQD----FQIHRAFIGLELVPGTRRLALMNCLLHDI 234 + Y++ S+++ TQ+ + F+ +E RLALMNCLLH I Sbjct: 176 TNEYMQVINDEFSESSSQGPPKNQTQNQNKFCTLETNFLAVEPDLIRHRLALMNCLLHRI 235 Query: 235 EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQ 294 N +R G++L S+ E P+A ++ + F S + + + L +Q Sbjct: 236 --NHSQHLPVRWGDSLLSNLEKWPQADVILSILVFASDLSEELGK------HDASLALLQ 287 Query: 295 HIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNV 354 HI +TL PGGRAAV++PD +L G +R L+D C LHT+LRLP GIFY V ++ Sbjct: 288 HIYQTLKPGGRAAVILPDKLLNAVGPAQQVRGTLLDTCVLHTVLRLPHGIFYPYKVPAHL 347 Query: 355 LFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSP 414 LFF +G A+ T++VW YDLR P FG+ EHL FE++YG+DP+G S Sbjct: 348 LFFWRGHTADEK-----TENVWFYDLRAKCPIFGQYLRLKREHLMSFEKIYGDDPYGKSK 402 Query: 415 RTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSI 474 R E + EEN RW FSR + +SD LD+ WL + + I Sbjct: 403 RREEQ------------DEEN----------RWHHFSRTHL-AQRSDRLDLCWLTEANII 439 Query: 475 DADSLPEPDVLAAEAMGELVQALSELDALMRE 506 + D+ E + + V L +L L+ E Sbjct: 440 TDNQNTTGDIW--EVLEKTVDDLEDLTKLLCE 469 >UniRef50_A8ZY58 N-6 DNA methylase n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZY58_DESOH Length = 490 Score = 184 bits (467), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 130/399 (32%), Positives = 194/399 (48%), Gaps = 53/399 (13%) Query: 14 CDNLRDGGVSYQNYVNELASLLFLKMCKETG----QEAEY--------LPEGYRWDDLKS 61 CD L GV +NYV +LA L FLK E QEA++ L Y W Sbjct: 20 CDQLNQEGVDARNYVEQLAWLFFLKAFDEAETRREQEADFDDTAYGRRLSGQYAWSSWAR 79 Query: 62 RIGQ--EQLQFYR-KMLVHL-------GEDDKKLVQA---VFHNVSTTITEPKQITALVS 108 + L+F K+ + L G D L Q +F NV +V Sbjct: 80 NTDHPDQMLEFVDGKLWIKLTSPDPQKGLGDDLLAQRFRRIFDNVRNYCRRGISFARVVQ 139 Query: 109 NMDSLDWYNGAHGKSRDD---FGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKP 165 +D L H S D ++YE LL++ A ++ AG+++T R +I+ ++ +++P Sbjct: 140 QVDKL------HFSSETDVIVLSEIYEDLLKRVAADSAGYAGEFYTQRHIIRAMVEVVQP 193 Query: 166 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLA 225 +P++ V DP GTAGFL EA Y++ L G D + F GLE+ P T L Sbjct: 194 KPKDKVYDPCFGTAGFLGEAADYIRRNNT----LSGPQLDALQKKTFYGLEIKPLTYLLG 249 Query: 226 LMNCLLHDIEGNLDHGGAIRLGNTLGSDGENL---PKAHIVATNPPFGSAAGTNITRTFV 282 MN +LH IEG + L NTL +N+ + ++ +NPP+G + + F Sbjct: 250 TMNMILHGIEG-----ANLELTNTLEIHSQNVGEKARYDVILSNPPYGGKMASGMQTNFR 304 Query: 283 HPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPT 342 +S + F+QHI+ L GGRA VV+P+ VLF GG +R++L+++ ++HTIL LP Sbjct: 305 VRSSATECLFLQHIMANLAKGGRAGVVIPEGVLFRGGPDQKVRKELLEQFNVHTILSLPA 364 Query: 343 GIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDL 380 G F GVKTNV+FF + +D + T VW +L Sbjct: 365 GCFLPYTGVKTNVIFFDR------PKDDSGTKSVWFCEL 397 >UniRef50_B7KLE1 N-6 DNA methylase n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7KLE1_CYAP7 Length = 503 Score = 168 bits (426), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 139/481 (28%), Positives = 221/481 (45%), Gaps = 73/481 (15%) Query: 13 LCDNLRDGGVS-YQNYVNELASLLFLKMCKETGQEA------------EYLPEGYRWDDL 59 +CD +R + YV EL+ +LFLK+ +T Q + + E YRW D Sbjct: 23 ICDIMRRSNCAGALQYVPELSWILFLKILDDTEQREAEEAEAVGDRFDDSIAEPYRWRDW 82 Query: 60 KSRIGQEQLQFYR------------KMLVHL-GEDDK-------KLVQAVFHNVSTT-IT 98 + G ++L+ +++ +L G DK K++ V NV I Sbjct: 83 AAPQGTQRLKLQMGEMGKFIPFVNDEVIPYLKGLKDKPRATPRQKIISEVMSNVERVRID 142 Query: 99 EPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKT 158 + ++ + +D+ + H +YEGLL K + G GQ+FTPR +++ Sbjct: 143 SEANLLDILDKVHEIDYIDTTHIFP---ISQVYEGLLLKMGEKNNDG-GQFFTPREIVRA 198 Query: 159 IIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELV 218 +I ++ P+ E + DPA GT GFL ++ Y++ D D+ + + F G E Sbjct: 199 MIKIINPKVGEKIYDPACGTGGFLAQSYEYIRDNLGD--DITPEQLEPLKLNTFYGREKE 256 Query: 219 PGTRRLALMNCLLHDIE-GNLDHGGAIRLGNTLGSDGENLPKAH-IVATNPPFGSAAGTN 276 +AL N +LH I+ +L HG + T G ++ P I+ TNPPFG Sbjct: 257 NLIYPIALANLVLHGIDLPHLWHGNTLNGEVTYGDLFKDAPPLFDIILTNPPFGGKEHKT 316 Query: 277 ITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDI--RRDLMDKCHL 334 + F + TS Q+ F+QH+I++L PGGR +V+ + VLF + + +R L++ C+L Sbjct: 317 VQAQFDYKTSATQVLFLQHVIKSLAPGGRCGIVLDEGVLFRTNEKAFVQTKRKLLNDCNL 376 Query: 335 HTILRLPTGIFYAQ--GVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTP 392 + I+ LP G F A GVK N+LFF+KG T+ +W YDL S KR P Sbjct: 377 YCIISLPAGTFKAAGGGVKANILFFSKG---------EPTEKIWYYDLSD--ISVTKRKP 425 Query: 393 FTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEV-----------ADSEENKNTDQH 441 +L FE + P ++ W+ EE E A S E+K+T + Sbjct: 426 L---NLSDFEEFFKLFPS--REESDKSWTITREEIEAKNFDLKAVNPNAQSFEDKSTPKE 480 Query: 442 L 442 L Sbjct: 481 L 481 >UniRef50_C7P6B0 N-6 DNA methylase n=1 Tax=Methanocaldococcus fervens AG86 RepID=C7P6B0_METFA Length = 502 Score = 163 bits (413), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 134/474 (28%), Positives = 222/474 (46%), Gaps = 87/474 (18%) Query: 14 CDNLR--DGGVSYQNYVNELASLLFLKMCKETGQEA---------EYLP---EGYRWDDL 59 CD LR DG +Y+ +L+ LLFLK+ + +E EY+P + YRW + Sbjct: 16 CDILRTDDGTSGATDYIEQLSWLLFLKVFEGVEEELEEIAILNGEEYIPVIDKKYRWSNW 75 Query: 60 KSR--IGQEQ---LQF-------YRKM------LVHL-------------GEDDKKLVQA 88 R IG+ + +F ++K+ ++H G +++ V Sbjct: 76 AKRDWIGKPKECLKEFVDDVDEEFKKIDKPENAIIHFINNILFPYLRNLSGTPEREKVAQ 135 Query: 89 VFHNVS-TTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAG 147 +F +S + P + ++ +D +D N + +YE +L +E +G Sbjct: 136 IFMEISGNKMKSPYNLMDVIEKIDKIDPRNYEDTQV---LSQIYEEILLNMGSEA-GWSG 191 Query: 148 QYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQ 207 +++TPRP+I+ I+ ++KP+ E + DP G+AGFL+EA +Y+K + D + ++ Sbjct: 192 EFYTPRPVIRFIVKIIKPKVGEKIFDPFGGSAGFLVEAYKYIKDKLG--DKITVQEEEIL 249 Query: 208 IHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLP---KAHIVA 264 F G E P L MN +LH G L R N+L D N+P K ++ Sbjct: 250 QRETFYGHEKKPLPYLLGTMNMILH---GILTPNYYRR--NSLMEDVHNVPEHEKYDVIM 304 Query: 265 TNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPD-NVLFEGGKGTD 323 TNPPFG + F +P + +Q+I+ L GGRAAV++P+ ++F GGK + Sbjct: 305 TNPPFGGKENKIVQNNFPYPVQATEALALQYIMRKLKDGGRAAVILPEGQIMFGGGKFKE 364 Query: 324 IRRDLMDKCHLHTILRLPTGIF--YAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLR 381 IRR+L++K ++ I+ LP G+F GVKTN++FF K P T ++W Y+L Sbjct: 365 IRRELLEKFNVFAIVSLPQGVFSQMGAGVKTNIVFFEKS--GEP------TKEIWYYELE 416 Query: 382 TNMPSFGKRTPFTD----EHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVAD 431 F K+ D + L+ FE+ +E W + EE + D Sbjct: 417 G---KFTKKNKIKDKDFEDALKKFEK---------REISENSWIVSIEEIKKRD 458 >UniRef50_B1IB55 Type I restriction modification enzyme methylase subunit n=56 Tax=Bacteria RepID=B1IB55_STRPI Length = 497 Score = 161 bits (407), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 143/486 (29%), Positives = 225/486 (46%), Gaps = 66/486 (13%) Query: 7 VAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK--ETGQE--AEYL------------ 50 + +LW++ +G + + +L LLF+K E G+E AE+L Sbjct: 10 IDQLWEIL--WTEGNANPLTNIEQLTYLLFMKDLDSVELGRESDAEFLGIPYEGVFPKDK 67 Query: 51 PEGYRWDDLKSRIGQEQLQFYRKMLVHL--------GEDDKKLVQAVFHNVSTTITEPKQ 102 PE YRW K+ IG Q + YR M + G+ D I +P Sbjct: 68 PE-YRWSTFKN-IGDAQ-EVYRLMTQEIFPFIKNLKGDTDDTAFSRYMREAIFQINKPAT 124 Query: 103 ITALVSNMD-----SLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIK 157 + +S +D LD +S D GD+YE LL K + K+G Q+ TPR +I Sbjct: 125 LQKAISILDVFPTRGLDVDFDNDKQSITDIGDIYEYLLSKLSTAGKNG--QFRTPRHIID 182 Query: 158 TIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLEL 217 ++ L++P ++++ DPA G+AGFL+ A RY+K + ++ + + F ++ F G + Sbjct: 183 MMVELMQPTIKDIISDPAMGSAGFLVSASRYLKRKKDEWETNTDNINHFH-NQMFHGNDT 241 Query: 218 VPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNI 277 RL MN +LH +E I ++L D E K +V NPPF + N Sbjct: 242 DTTMLRLGAMNMMLHGVE-----NPQISYLDSLSQDNEEADKYTLVLANPPFKGSLDYNS 296 Query: 278 TRT---FVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKG-TDIRRDLMDKCH 333 T T +L F+ + TL PGGRAAV+VPD VLF K IR+++++ Sbjct: 297 TSNDLLATVKTKKTELLFLSLFLRTLKPGGRAAVIVPDGVLFGSSKAHKGIRQEIVENHK 356 Query: 334 LHTILRLPTGIF--YAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSF-GKR 390 L ++ +P+G+F YA GV T +L FTK TD VW YD++ + S KR Sbjct: 357 LDAVISMPSGVFKPYA-GVSTAILIFTK-------TGNGGTDKVWFYDMKADGLSLDDKR 408 Query: 391 TPFTDEHL-QPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRK 449 P +D + ER H L E + + + VA+ +EN D L+ +++++ Sbjct: 409 QPISDNDIPDIIERF-----HHLEKEAERQRTDQSFFVPVAEIKEN---DYDLSINKYKE 460 Query: 450 FSREWI 455 E + Sbjct: 461 IEYEKV 466 >UniRef50_C3NN83 N-6 DNA methylase n=1 Tax=Sulfolobus islandicus Y.N.15.51 RepID=C3NN83_SULIN Length = 521 Score = 161 bits (407), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 134/489 (27%), Positives = 226/489 (46%), Gaps = 54/489 (11%) Query: 4 NDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKM-----------CKETGQEAEY-LP 51 N +LW + + R V Y+ E + L FL++ KE G++ + +P Sbjct: 10 NSFGDELWNIANIFRSDIVKPTEYLEEFSYLFFLRLFDEQEIYQENIAKELGEDYKSTIP 69 Query: 52 EGYRW--------DDLKSRIGQEQLQFYRKMLVHLG----------EDDKKLVQAVFHNV 93 YR+ + +S+ + +F KM + L ++D+ +++ +F N Sbjct: 70 SEYRFFNWACDPRNYARSKGFKTVTEFLDKMFLDLANLPDTGDPKIDEDRSIIKKIFSNK 129 Query: 94 STTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153 + + + ++ + L G G+ D G YE L+ K + GQ+FTPR Sbjct: 130 TRRMQNDNTVIQVIDRLRLLKL-PGDEGRKFDALGRGYEFLMYKLGQQ--GNYGQFFTPR 186 Query: 154 PLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTND--LDDLDGDTQDFQIHRA 211 ++ ++ ++ P P EV+ DPAAGT GFL++A YVK + ++ D + + ++ Sbjct: 187 NIVSFMVRIIDPNPGEVILDPAAGTGGFLVKAFEYVKQKIERQITNEADKEIKIRELKHN 246 Query: 212 FIGLELVPGTRRLALMNCLLH-DIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFG 270 G+E P +L LMN LH D N ++ A+ G+ G+ E KA ++ TNPPFG Sbjct: 247 LYGIEKAPDVFKLGLMNLRLHGDGSSNFENLDALS-GSVQGAYKE---KADVITTNPPFG 302 Query: 271 SAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLF-EGGKGTDIRRDLM 329 +G T F + + F+Q I++ + PGGR A V+ + +LF E +G IRRDL+ Sbjct: 303 PFSGEP-TGNFKYKFKRFETYFIQAIMDMVKPGGRVATVMLEGLLFNENYEG--IRRDLV 359 Query: 330 DKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFG 388 DK + + LP G+F KT++L F + PN+ + TD V +++ ++ Sbjct: 360 DKFKIEAVFSLPAGVFLPYSAAKTDILVFRR-----PNKGEKTTDKVLFFNIESDGYELK 414 Query: 389 -KRTPFTDEHLQPFERVYGEDPHGLSPRTE---GEWSFNAEETEVADSEENKNTDQHLAT 444 R P D + G+ P L + GE E+ V D EE + D L Sbjct: 415 PTRKPIGDCDKKGDIDGCGDLPLALEIYQKFKRGEEIPQTEQYFVVDVEEIRKHDYRLDI 474 Query: 445 SRWRKFSRE 453 + +RK E Sbjct: 475 NVYRKVRLE 483 >UniRef50_A9B990 N-6 DNA methylase n=2 Tax=Chloroflexi (class) RepID=A9B990_HERA2 Length = 571 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 155/572 (27%), Positives = 252/572 (44%), Gaps = 88/572 (15%) Query: 3 NNDLVAKLWKLCDNLRD----GGVSYQNYVNELASLLFLKMCKETGQ---------EAEY 49 N L + +W+ CD LR GGV Y LA LLFL+ + E Y Sbjct: 12 NETLRSNMWRACDILRRDNNVGGV--MQYTEHLAWLLFLRFMDMEEKRRVDLALLNEMPY 69 Query: 50 LPEGY---RWD------DLKSRIGQEQLQFYRKMLVH-----LGEDDKKLVQAVFHNVST 95 P + WD L+ R E +QF R L+ G + + +F + ST Sbjct: 70 HPVLHGDLSWDFWASPEALERRSAPELIQFVRGRLLPGLATLTGSSLARTIAGIFSDEST 129 Query: 96 ---TITEPKQITALVSNM-DSLDWYNGAHGKSRDDFGDM---YEGLLQKNANETKSGAGQ 148 + + A N+ D L+ N H + D + YE LL++ ++E ++ AG+ Sbjct: 130 GDQNVVRAVPVCASGYNLKDVLEIINSIHFELDSDLFTISLFYEDLLERMSSENRT-AGE 188 Query: 149 YFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQI 208 + TPR +I+ ++ L+ PQ E V DPA G+AGFL++A +++ +++ + Sbjct: 189 FHTPRAVIRFMVELMAPQIGETVYDPAYGSAGFLVQAFLFMQPFARTIEEHTS------L 242 Query: 209 H-RAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTL--GSDGENLPKAHIVAT 265 H + F G+E + L MN +LH + + + NTL G++ + +V T Sbjct: 243 HEQTFFGIEKKALSALLGTMNMVLHGV-----NAPKLLRANTLEESMQGDSGQRYDVVLT 297 Query: 266 NPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLH--PGGRAAVVVPDNVLFEGGKGTD 323 NPPFG G +I + F + +L F+QHII+ L P RAA+VVP+ LF G + Sbjct: 298 NPPFGGTEGAHIQQNFAVKANATELLFLQHIIKKLKRTPNARAAIVVPEGTLFRSGAFAE 357 Query: 324 IRRDLMDKCHLHTILRLPTGIFYAQG-VKTNVLFFTKG---TVANPNQDKNCTDDVWVYD 379 +++DL+ + HL + LP G F VKT +LF + +ANP ++ W Y+ Sbjct: 358 VKQDLLQQFHLFAVFSLPPGTFAPYSDVKTAILFLKRPDSLLIANP----LAREETWFYE 413 Query: 380 LRT--NMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEE--- 434 L + F K + +D H ++ LS E + + A+ S E Sbjct: 414 LPLPEGLKKFSKGSRISDSHFDEARHLWQVWSDYLSGNAERPFVYAADLRPHQTSNEPTP 473 Query: 435 -------NKNTDQHLATSRWRKFS-------REWIRT---AKSDSLDISWLKDKDSIDAD 477 NK T L++ R+F WI T S D+S ++ ++ + Sbjct: 474 IQETFFANKQTSLQLSSINNRQFEPVFARNINAWIETYNDIASRGFDLS-ARNPHRVEQE 532 Query: 478 SLPEPDVLAAEAMGELVQALSELDALMRELGA 509 S VL A L++ EL ++++ L A Sbjct: 533 SRESAFVLTA----RLLERSRELHSMIQSLHA 560 >UniRef50_Q5HSN6 Type I restriction-modification system, M subunit n=37 Tax=Proteobacteria RepID=Q5HSN6_CAMJR Length = 494 Score = 158 bits (399), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 127/449 (28%), Positives = 217/449 (48%), Gaps = 72/449 (16%) Query: 9 KLWKLCDNLR-DGGVS-YQNYVNELASLLFLKMCKET-----------GQEAE-YLPEGY 54 K+ K+ D LR D G+S +Y ++ +LFLK + G++ + L E + Sbjct: 4 KVDKITDILRRDDGISGAMHYTEQIGWILFLKFLDDYETNLKDLAFLDGKDYKSILQEKF 63 Query: 55 RWD-----------DLKSRI-GQEQLQFYRKMLVHL-----GEDDKKLVQ----AVFHNV 93 W D+K+ + G + L+F K L DD K ++ +F + Sbjct: 64 SWSVWAAPKKDGKLDVKNALSGSDLLEFVNKELFPYLKNFKNNDDFKSIEYKIGGIFEFI 123 Query: 94 STTITEPKQITALVSNMDSLDWYNGAHGKSRDDF--GDMYEGLLQKNANETKSGAGQYFT 151 I + +++ +D + + K + F G++YE LL K+ +G+++T Sbjct: 124 DNRIANGHTLREVINIIDEISF-----NKEDEVFALGEVYEKLL-KDMGSDGGNSGEFYT 177 Query: 152 PRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYV--KSQTNDLD-DLDGDTQDFQI 208 PRPLIK ++ ++ P+P+E + DP+ G+ GFL+E+ ++ K +T +L + +F Sbjct: 178 PRPLIKAMVEVIDPKPKERIYDPSCGSCGFLVESFLHILYKDRTKGKKANLSVEELEFLK 237 Query: 209 HRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLG---SDGENLPKAHIVAT 265 + A G E P + + +MN +LH+++ I NTL +D K ++ Sbjct: 238 NDALFGKEKTPLSYAMGVMNMILHEVK-----SPNIIKTNTLNKKITDITQSEKYEVILA 292 Query: 266 NPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKG-TDI 324 NPPFG I F ++ +L F+QHI+++L GR A++VP+ VLF+ + Sbjct: 293 NPPFGGKEKEQIQENFPIKSNATELLFLQHILKSLKNNGRCAIIVPEGVLFQNSNAFVSV 352 Query: 325 RRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCT---DDVWVYDL 380 ++DL+D +L +L LP+G+F VKTNVLFF+KG K C D V+ Y+L Sbjct: 353 KKDLLDDFNLECVLSLPSGVFLPYSAVKTNVLFFSKG--------KKCICEGDGVYYYEL 404 Query: 381 RTNMPSFG--KRTPFTDEHLQPFERVYGE 407 +P + K P H + F + Y E Sbjct: 405 ---IPPYKLTKNKPLEYTHFKEFLKCYKE 430 >UniRef50_B8KQ49 Type I restriction-modification system, M subunit n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KQ49_9GAMM Length = 489 Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 124/436 (28%), Positives = 204/436 (46%), Gaps = 61/436 (13%) Query: 28 VNELASLLFLKMCKETGQEAEYL--------PEGYRWDDLKS----RIGQEQLQFYRKML 75 +++L ++FLK+ + E E + PE RW + + + G+ L F +L Sbjct: 28 ISQLVWMIFLKILDDREAELELIEDDFVSPIPEHLRWRNWAANPEGQTGEALLDFVNGVL 87 Query: 76 V-HLGE--------DDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDD 126 L E ++V+++F + + +++ ++ +D+ N ++R Sbjct: 88 FPKLKELQAQGAVGKRAQVVRSIFDGALNFMKSGTLMRQVINKINEIDFNNT---ENRHT 144 Query: 127 FGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEA- 185 FGD+YE +L+ ++ AG+++TPR + + II L PQ E+V DPA GT GFL A Sbjct: 145 FGDIYEKILKDL--QSAGNAGEFYTPRAVTRLIIDRLNPQLDEIVFDPACGTGGFLSCAI 202 Query: 186 ---DRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGG 242 ++V++ D +T + R G+E L + N +LH I D Sbjct: 203 DHKQQFVRTSA------DRET----LARTLRGVEKKSMPFNLCITNMILHGI----DTPT 248 Query: 243 AIRLGNTLG---SDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLC--FMQHII 297 I NTL D + + H++ATNPPFG I F ++ FM II Sbjct: 249 GIAHDNTLARPFKDYGDKDRVHVIATNPPFGGMEEDGIENNFPAQYRTRETADLFMALII 308 Query: 298 ETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLF 356 + L GRA V++PD LF G + I++DL++ C+LHTI+RLP G+F G+KTN+LF Sbjct: 309 KLLRVNGRAGVILPDGFLFGEGTKSSIKKDLIETCNLHTIIRLPGGVFNPYTGIKTNILF 368 Query: 357 FTKGTVANPNQDKNCTDDVWVYD--LRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSP 414 FTKG T+D+W ++ + ++ K P E +G++ Sbjct: 369 FTKG---------QPTEDIWFWEQPYPEGVVNYNKGRPMQFEEFDALRDWWGDEATKFRT 419 Query: 415 RTEGEWSFNAEETEVA 430 RTE ++ VA Sbjct: 420 RTENPHAWKVTADHVA 435 >UniRef50_C5ZY48 Type I restriction-modification system, M subunit n=1 Tax=Helicobacter canadensis MIT 98-5491 RepID=C5ZY48_9HELI Length = 499 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 127/448 (28%), Positives = 208/448 (46%), Gaps = 76/448 (16%) Query: 18 RDGGVS-YQNYVNELASLLFLKMCKETGQE------------AEYLPEGYRWD------- 57 RD G+S +Y +++ +LFLK + +E A L Y W Sbjct: 14 RDDGISGAMHYSEQISWILFLKFLDDYERELKDEAFLNDVPYASILDSQYAWQSWAAPKK 73 Query: 58 ----DLKSRI-GQEQLQFYRKMLVHL------GEDDKKL---VQAVFHNVSTTITEPKQI 103 D+K+ + G + L+F L ED K + + +F + I + Sbjct: 74 DGKLDVKNALSGSDLLEFVNNELFPYLKSFKNNEDFKSIAYKIGGIFEFIDNRIANGHTL 133 Query: 104 TALVSNMDSLDWYNGAHGKSRDDF--GDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIH 161 +++ +D L + K D F GD+YE LL K+ +G+++TPR L+K ++ Sbjct: 134 REVINLIDELSF-----SKESDVFALGDVYEKLL-KDMGSDGGNSGEFYTPRALVKVMVE 187 Query: 162 LLKPQPREVVQDPAAGTAGFLIEA-------DRYVKSQTNDLDDLDGDTQDFQIHRAFIG 214 ++ P+P+E + DPA G+ GFL+E+ DR + N L + +F A G Sbjct: 188 VINPKPKERIYDPACGSCGFLVESFLHILYEDRAKGQKAN----LSVEELEFLQKDALFG 243 Query: 215 LELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLG---SDGENLPKAHIVATNPPFGS 271 E P + + +MN +LH I+ I NTL +D + ++ NPPFG Sbjct: 244 KEKTPLSYAMGVMNMILHGIKS-----PNIIKTNTLSKRITDITESERYEVILANPPFGG 298 Query: 272 AAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKG-TDIRRDLMD 330 I F+ P++ +L F+QHI+++L GR A++VP+ VLF+ +++DL++ Sbjct: 299 KEKEQIQGNFIVPSNATELLFLQHILKSLKTNGRCAIIVPEGVLFQNSNAFVKVKQDLIE 358 Query: 331 KCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANPN-QDKNCTDDVWVYDLRTNMPSFG 388 +L +L LP+G+F VKTNVLFF+KG + QD N V+ Y+L +P + Sbjct: 359 NYNLECVLSLPSGVFLPYSAVKTNVLFFSKGLRGIVDEQDSN----VYYYEL---IPPYK 411 Query: 389 --KRTPFTDEHLQPFERVYGE---DPHG 411 K P H + F Y + PH Sbjct: 412 LTKNKPLEYVHFKEFLECYKQRKITPHS 439 >UniRef50_C6A4W7 Type I restriction-modification system methyltransferase subunit n=1 Tax=Thermococcus sibiricus MM 739 RepID=C6A4W7_THESM Length = 498 Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 130/484 (26%), Positives = 221/484 (45%), Gaps = 69/484 (14%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMC----KETGQEAE-----YLP 51 M L +K+ + + +R G++ +YV +L+ +LFLK+ +E EAE Y+P Sbjct: 1 MERQTLASKIEHIYEIMRAEGLTILDYVEQLSWMLFLKILSDREEERKLEAEVKGEKYVP 60 Query: 52 ---EGYRWDDLKSRIGQEQLQ-------FYRKMLVHL--------GEDDKKLVQAVFHNV 93 E Y + + R G + L+ FY + L G D+ + +F NV Sbjct: 61 IIKEEYLFHNWPKRFGVDSLKKVKDVKTFYDFITNELWPYLSSLGGTDELNKIGEIFSNV 120 Query: 94 STTITEPKQITALVSNMDSLDWYNGAHGKSRDD--FGDMYEGLLQKNANETKSGAGQYFT 151 + + +P + + N++ + H D +YE L E AG+Y+T Sbjct: 121 TVKVHDPHNLLEIFQNIEDI------HKDDEDTHIMSQLYEETLMLMGREG-GAAGEYYT 173 Query: 152 PRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRA 211 PRP+++ ++ ++ P+ + V DP G+ GFL+EA ++ Q +DL ++ +A Sbjct: 174 PRPIVRFMVKVVDPRIGQTVFDPFCGSGGFLVEAYNHMYEQAKTAEDLR------KLDKA 227 Query: 212 FIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAH-IVATNPPFG 270 F G EL +A MN LLH++ L +T D N + + ++ TNPPFG Sbjct: 228 FYGQELKTQAYLIANMNTLLHNVNAKLVK------TDTFSEDLHNPGELYDVILTNPPFG 281 Query: 271 SAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKG-TDIRRDLM 329 + + + T + +L +QH+++ PGG+ +V+PD VL K +R++L+ Sbjct: 282 GKIKESNLQNLIVKTRSTELAALQHVMKKAKPGGKVGIVLPDGVLSNVTKAYVKVRKELL 341 Query: 330 DKCHLHTILRLPTGIFY------AQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDL-RT 382 +K ++ I+ LP G+F G KT++LFF +G T +VW Y+L Sbjct: 342 EKNNVFAIVSLPQGVFANISPKGGSGPKTSLLFFERG---------KPTREVWYYELIPP 392 Query: 383 NMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNA--EETEVADSEENKNTDQ 440 N ++ + P DE L + + L E EW A E + V EE K D Sbjct: 393 NGKNYTRANPIKDEDLSDALKKFEAWKKYLETDDE-EWKKKALSENSWVVSVEEIKEMDY 451 Query: 441 HLAT 444 L+ Sbjct: 452 DLSA 455 >UniRef50_B4VZI3 N-6 DNA Methylase family n=2 Tax=Bacteria RepID=B4VZI3_9CYAN Length = 513 Score = 151 bits (381), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 129/459 (28%), Positives = 207/459 (45%), Gaps = 80/459 (17%) Query: 1 MNNNDLVAKLWKLCDNLRD----GGVSYQNYVNELASLLFLKMCKETGQEAEYLPEG--- 53 M+ L +W+ CD LR GGV YV L+ LLFLK GQE + E Sbjct: 1 MSREQLTNDIWRACDILRRDNNCGGV--MEYVEHLSWLLFLKFLD--GQEDAFEQEAKSA 56 Query: 54 -----------YRWDDLKSRI-----------------GQEQLQFYRKMLV-HL----GE 80 YRW + ++ + ++F R L+ HL G Sbjct: 57 NRKYTRVISRQYRWSNWVTKALGKKGGKKGRRTIPAWDDHQLMEFVRGELIPHLASLSGS 116 Query: 81 DDKKLVQAVFHNVSTTITE-PKQITALVSNMDSLDWYNGAHGKSRDDF---GDMYEGLLQ 136 +++++ +F + + I + P + ++ +D +D N DD +YE LL+ Sbjct: 117 PEREVIAGIFRDRNVIICDSPDNLKDVLKIVDQIDLTNP------DDIYTVSHIYEDLLK 170 Query: 137 KNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDL 196 + +E K AG+++TPR +I+ ++ ++ PQ E V DPA GT GFL+EA + + Q Sbjct: 171 RLGSENKM-AGEFYTPRSVIRFMVEVIDPQIGETVYDPACGTCGFLLEAFLHTQKQ---- 225 Query: 197 DDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGS---D 253 + D + Q H F+G E P L MN +LH + IR NTL D Sbjct: 226 EKTAKDREILQRH-TFVGQEKKPLPALLGTMNMVLHGV-----LVPDIRRRNTLAEDIRD 279 Query: 254 GENL--PKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHP--GGRAAVV 309 G L ++ TNPPFG I + F + +L F+QH+++ L P G R +V Sbjct: 280 GSGLFDETFDVILTNPPFGGKENARIQKNFPVKANATELLFLQHVMKKLKPKQGARCGIV 339 Query: 310 VPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQG-VKTNVLFFTKGTVANPNQD 368 VP+ LF GG ++++L+ +L ++ LP G F VK +LFF +G Q Sbjct: 340 VPEGTLFRGGAFATVKKELLHDFNLFMVVSLPPGTFAPYSDVKAALLFFERGE----QQK 395 Query: 369 KNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGE 407 + ++ + D ++ F K +DEH +V+ + Sbjct: 396 EVLYQEIALPD---DLKKFSKVNSISDEHFAEARQVWQQ 431 >UniRef50_UPI0001B4C614 type I restriction-modification system, M subunit n=1 Tax=Streptomyces griseoflavus Tu4000 RepID=UPI0001B4C614 Length = 503 Score = 151 bits (381), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 121/384 (31%), Positives = 183/384 (47%), Gaps = 61/384 (15%) Query: 30 ELASLLFLKMCK-ETGQEAEYL-PEGYR-----------WDDLKSRIGQEQLQFYR-KML 75 +L+ LLFLK QE E L P+GYR W + G E F K++ Sbjct: 46 QLSWLLFLKAFDGRVEQEGEALDPDGYRRAIEEPYRWEDWATVPDFSGDELKSFVNDKLI 105 Query: 76 VHLG-------EDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFG 128 HL ED + ++ +F +V + + LV D N H S DD Sbjct: 106 PHLAGLVGDDAEDPRNVISTIFKDVVNRMQSGTLLRDLV------DIVNQIHFVSADDIH 159 Query: 129 DM---YEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEA 185 M YE +L K + G+G+++TPRP+ + ++ + E + DPA+GT GFL++A Sbjct: 160 TMAFVYESIL-KEMRDVAGGSGEFYTPRPVNRFMVQQSFLELGESILDPASGTGGFLVQA 218 Query: 186 DRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEG-NLDHGGA- 243 +K Q DTQ ++H+ G+E P L MN LLH I+ ++ G A Sbjct: 219 YEALKGQVKT------DTQRRRLHKDIRGIEKKPLPYLLGSMNLLLHGIDAPHIRRGSAL 272 Query: 244 IRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFV--HPTSNKQLCFMQHIIETLH 301 + + N+ +D K +V TNPPFG + + F T F+ I++ L Sbjct: 273 LEMRNSNAAD-----KVDVVLTNPPFGGEEEATVVKAFPDGFRTQETAWLFLYSILDQLK 327 Query: 302 PGGRAAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGIF--YAQGVKTNVLF 356 GGR A+V+P+ LF G+ G I++ LM C+LHT++RLP G+F Y Q + +N+LF Sbjct: 328 LGGRCAIVLPNGSLFAVGENSIGAKIKKKLMKDCNLHTVVRLPQGVFAPYTQ-IPSNILF 386 Query: 357 FTKGTVANPNQDKNCTDDVWVYDL 380 F K P Q +VW Y++ Sbjct: 387 FEK---TGPTQ------EVWFYEV 401 >UniRef50_B1VEP0 Type I restriction-modification system, methyltransferase subunit n=1 Tax=Corynebacterium urealyticum DSM 7109 RepID=B1VEP0_CORU7 Length = 524 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 121/399 (30%), Positives = 195/399 (48%), Gaps = 55/399 (13%) Query: 90 FHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQY 149 + S I P + ++ +D+L++ N RD GD+YE +L K A+ +G Q+ Sbjct: 110 MRDASFGIENPATLLRVMEQVDALEFTN------RDMSGDLYEYMLSKLASSGTNG--QF 161 Query: 150 FTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIH 209 T +I ++ L++P P+ V DPA GTAGFL+ A + + D + +D D+ Sbjct: 162 RTTSHIIDLMVELMRPAPKHRVIDPACGTAGFLVGAREWTRHHHAD-EFMDRRVSDWYTQ 220 Query: 210 RAFIGLELVPGTRRLALMNCLLHDIEG-NLDHGGAIRLGNTLGSDGENLPKA-----HIV 263 RA G + R+A MN +H E N+ + ++ + +P+A I+ Sbjct: 221 RALTGFDFDSSMVRIAAMNMFMHGFEDPNISYRDSL----------QQVPEADREAFDII 270 Query: 264 ATNPPF-GSAAGTNITRTFVHPTSNK--QLCFMQHIIETLHPGGRAAVVVPDNVLFEGGK 320 NPPF GS +++ + S+K +L F+ + L PGGRAAV+VP+ VLF K Sbjct: 271 LANPPFAGSIDESSLDPELANLISSKRTELLFLARFLTLLKPGGRAAVIVPEGVLFGSTK 330 Query: 321 G-TDIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVY 378 +IR+ L+D+ L +++LP+G F GV T +L FT+ D+ TDDVW Y Sbjct: 331 AHREIRKHLIDEQRLDAVIKLPSGTFKPYSGVSTAILCFTR-------TDRGSTDDVWFY 383 Query: 379 DLRTNMPSF-GKRTPFTDEHL---QPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEE 434 ++ + S KRTP D +L +P ERV G P AE ++ E Sbjct: 384 EVTADGYSLDDKRTPLLDANLLGPRPTERVADSSVPGDDP---------AEVLLTSEQHE 434 Query: 435 NKNTDQHLATSRWRKFS---REWIRTAKSDSLDISWLKD 470 N LA RW + S +E RT +S ++ ++ +++ Sbjct: 435 ANNLPDVLA--RWVERSGKEKERARTEQSFTVPVAEIRE 471 >UniRef50_A0QMK9 Type I restriction-modification system, M subunit n=2 Tax=Mycobacterium avium RepID=A0QMK9_MYCA1 Length = 495 Score = 147 bits (372), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 108/380 (28%), Positives = 175/380 (46%), Gaps = 52/380 (13%) Query: 28 VNELASLLFLKMCKETGQEAEYLPEG--------YRWDD------------LKSRIGQEQ 67 + +LA LLFLK + E E YRW D L + + E Sbjct: 43 IPQLAWLLFLKAFDGLEENREITEENFRPAIEAPYRWRDWAADPNGRTGDALLTFVNNEL 102 Query: 68 LQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDF 127 L + R + D + ++ AVF + + +V+ ++ +++ S DD Sbjct: 103 LPYLRGLSGTGSHDPRDVLAAVFKETYNRMLSGYLLRDVVNKVNEINF------ASSDDI 156 Query: 128 GDM---YEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIE 184 M YE +L + + +G+++TPRP+I+ I+ + P+ EV+ DPA GT GFL+E Sbjct: 157 HTMAHLYESML-REMRDAAGDSGEFYTPRPIIRFIVQQVDPRLGEVILDPACGTGGFLVE 215 Query: 185 ADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI-EGNLDHGGA 243 A ++ + L +H G+E P L +MN +LH + + N+ G A Sbjct: 216 ALEHLSPKVTTTAQLRA------LHENLRGIEKKPLPFLLGMMNLVLHGVGQPNITRGNA 269 Query: 244 IRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFV--HPTSNKQLCFMQHIIETLH 301 + T S + ++ TNPPFG +I F T+ F+Q +I L Sbjct: 270 LAESITQISKAR---RVDVILTNPPFGGEEEKSIQANFPADKQTAETAWLFLQLVIRMLK 326 Query: 302 PGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKG 360 GGR +VVP+ +LF GG G I++ L+ +C+LHTI+RLP G F + +N+LFF K Sbjct: 327 DGGRCGIVVPNGLLFGGGVGARIKKQLLTECNLHTIVRLPDGAFAPYTDIPSNLLFFDK- 385 Query: 361 TVANPNQDKNCTDDVWVYDL 380 T ++W Y++ Sbjct: 386 --------TGRTKEIWYYEI 397 >UniRef50_Q47282 Type I restriction enzyme EcoEI M protein n=110 Tax=Bacteria RepID=T1ME_ECOLX Length = 490 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 104/340 (30%), Positives = 168/340 (49%), Gaps = 31/340 (9%) Query: 85 LVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKS 144 +V+ F + + + +++ ++ +D+ + + R FGD+YE +L+ ++ Sbjct: 105 VVKQAFSDAYNYMKNGTLLRQVINKLNEIDF---SSSQERHLFGDIYEQILRDL--QSAG 159 Query: 145 GAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQ 204 AG+++TPR + + +++ + P+ E + DPA GT GFL A +VK D+ T+ Sbjct: 160 NAGEFYTPRAVTRFMVNRIDPKLGESIMDPACGTGGFLACAFDHVK------DNYVKTTE 213 Query: 205 DFQ-IHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENL-PKAHI 262 D + + + G+E L N LLH IE + IR NTL + + + Sbjct: 214 DHKTLQQQIYGVEKKQLPHLLCTTNMLLHGIEVPVQ----IRHDNTLNKPLSSWDEQVDV 269 Query: 263 VATNPPFGSAAGTNITRTFVHPTSNKQLC--FMQHIIETLHPGGRAAVVVPDNVLFEGGK 320 + TNPPFG I + F ++ F+Q IIE L GRAAVV+PD LF G Sbjct: 270 IVTNPPFGGTEEDGIEKNFPAEMQTRETADLFLQLIIEVLADKGRAAVVLPDGTLFGEGV 329 Query: 321 GTDIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYD 379 T I++ L ++C+LHTI+RLP G+F G+KTN+LFFTKG T +VW Y+ Sbjct: 330 KTKIKKLLTEECNLHTIVRLPNGVFNPYTGIKTNILFFTKG---------QPTKEVWFYE 380 Query: 380 --LRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTE 417 + ++ K P E Q +G + + R E Sbjct: 381 HPYPDGVKNYSKTKPMKFEEFQAEIDWWGNEADDFASREE 420 >UniRef50_B7KF58 N-6 DNA methylase n=4 Tax=Bacteria RepID=B7KF58_CYAP7 Length = 509 Score = 145 bits (366), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 127/454 (27%), Positives = 200/454 (44%), Gaps = 78/454 (17%) Query: 1 MNNNDLVAKLWKLCDNLRD----GGVSYQNYVNELASLLFLKMCKET----GQEAE---- 48 M+ L +W+ CD LR GG+ Y+ LA LLFLK E EAE Sbjct: 1 MSKEQLTNDIWRACDILRRDNNCGGI--MEYIEHLAWLLFLKFLDEQEDTFALEAELRNE 58 Query: 49 ---YLPEG-YRWDDLKSR-IGQEQLQ----------------FYRKMLVHL-----GEDD 82 Y+ EG YRW + ++ +G+++ Q F ++ L+ G + Sbjct: 59 KYHYMIEGEYRWSNWVTKGLGKKKKQSDKRNTPEWDADTLMGFVKEKLIPYLASLSGSPE 118 Query: 83 KKLVQAVFHNVSTTITEP----KQITALVSNMD---SLDWYNGAHGKSRDDFGDMYEGLL 135 ++++ +F + + + K + +V +D S D Y +H YE LL Sbjct: 119 REVIAGIFGGRTVILCDSVYNLKDVLEIVDRIDFSNSDDIYTVSH---------TYENLL 169 Query: 136 QKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTND 195 Q+ +E K AG+++TPRP+I+ ++ ++ P+ E V DPA GT GFL+ A Y+K Sbjct: 170 QRLGSENKM-AGEFYTPRPVIRFMVEVIDPKIGETVYDPACGTCGFLVAAYEYMKQWEQT 228 Query: 196 LDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGE 255 + D +D F G E P L MN +LH + I+ NTL D Sbjct: 229 IRD-----RDILQRHTFFGQEKKPLPALLGTMNMVLHGV-----LVPDIQRKNTLEEDTR 278 Query: 256 N-LPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHP--GGRAAVVVPD 312 + K I+ TNPPFG I + F + +L F++HII+ L R +VVP+ Sbjct: 279 TAIKKYDIILTNPPFGGKENKQIQKNFPVSANATELLFLEHIIKKLKTDDNARCGMVVPE 338 Query: 313 NVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQG-VKTNVLFFTKGTVANPNQDKNC 371 LF G ++ L++ +L ++ LP G F VK +LFF +G D+ Sbjct: 339 GTLFRSGAFGTVKEWLLNDFNLVMVVSLPPGTFAPYSDVKAALLFFERGKQG----DEVL 394 Query: 372 TDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVY 405 +V L + F K P D H + ++ Sbjct: 395 YQEV---VLPEELKKFSKGNPIDDIHFRQVREIW 425 >UniRef50_C6BRN9 N-6 DNA methylase n=26 Tax=Bacteria RepID=C6BRN9_DESAD Length = 489 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 94/286 (32%), Positives = 139/286 (48%), Gaps = 23/286 (8%) Query: 122 KSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGF 181 K + + +YE ++ N ++G G+Y+TPRPLI+ +I + P E + D A G+AGF Sbjct: 152 KEKHELSHLYETKIKNMGNAGRNG-GEYYTPRPLIRAMIKVASPTIGETIYDGACGSAGF 210 Query: 182 LIEADRYVKSQTNDLD-DLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEG-NLD 239 L E+ +++ ++ + L D F G E +A+MN +LH I+ N+ Sbjct: 211 LCESYDHLRYGSDGKEAKLSVDQLRSLQTSTFYGKEKKSLAYVIAIMNMILHGIDTPNIL 270 Query: 240 HGGAIRLGNTLG---SDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHI 296 H NTL +D + + I+ NPPFG I + F T F+QH Sbjct: 271 H------TNTLADNLADVQEKDRYDIILANPPFGGKERKEIQQNFPIKTGETAFLFLQHF 324 Query: 297 IETLHPGGRAAVVVPDNVLFEGGKGT-DIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVL 355 I+ L GGRAAVV+ + L + +R++L++ C+LHT+L P G F GVKT VL Sbjct: 325 IKYLKAGGRAAVVIKNTFLSNSDNASKSLRKELLESCNLHTVLDCPGGTFLGAGVKTVVL 384 Query: 356 FFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPF 401 FF KG T W Y L S GK P D+ L+ F Sbjct: 385 FFEKGA---------ATRKTWYYQLDPGR-SLGKTNPLNDDDLKEF 420 >UniRef50_Q6IVN0 Predicted HsdM n=1 Tax=uncultured gamma proteobacterium eBACHOT4E07 RepID=Q6IVN0_9GAMM Length = 475 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 111/430 (25%), Positives = 196/430 (45%), Gaps = 67/430 (15%) Query: 10 LWKLCDNLRDGGVSYQNYVNELASLLFLKMCKET------------GQEAEYLPEGYRW- 56 LWK DG + +Y+++ + +LFLK ++ Q + E Y W Sbjct: 14 LWK-----DDGCNTEVDYLSQFSWILFLKYLEDFEEDLKNRAILDGKQHTPIMDERYMWS 68 Query: 57 -------------DDLKSRIGQEQLQFYRKMLVHLGEDDKKL---VQAVFHNVSTTITEP 100 DDL S + ++ + R + +D K + V +F + + Sbjct: 69 SWGRNEGKNSLIDDDLISFVSEDLFPYLRNFKT-ISKDTKSIQYKVGQIFDQIKFLVESG 127 Query: 101 KQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTII 160 + ++ +D ++++ + D+ D+YE +++ N + + AGQY+TPRPLI +I+ Sbjct: 128 NILRDVLDEIDGIEFFKSSES---DELSDLYEESIKQMGN-SGTSAGQYYTPRPLINSIV 183 Query: 161 HLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHR--AFIGLELV 218 + P E V DPA G+ GFLI ++ L+ + ++F I + +G E + Sbjct: 184 KAVNPTLGETVLDPACGSGGFLISTFEHI------LNKKELTAKEFNILQKDTVLGQEKI 237 Query: 219 PGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLP---KAHIVATNPPFGSAAGT 275 + +MN ++H IE IR NTL ++ +L + ++ NPPFG + Sbjct: 238 GIPFAIGIMNMIMHGIE----TPNIIR-DNTLSTNTLDLQDKDRVDVIVANPPFGGSERE 292 Query: 276 NITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLH 335 I F +S FMQ+ ++ L GGRA +++ N +R+ L+ +C+LH Sbjct: 293 EIKSNFAIQSSETAYLFMQYFLKKLKIGGRAGLIIK-NTFLSNPDAASLRQLLLKECNLH 351 Query: 336 TILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTD 395 TI+ LP +F GV+T LFF KG T D++ Y L + + GK P Sbjct: 352 TIVDLPK-VFGTTGVQTVALFFEKG---------KKTKDIFYYQLNLDR-NIGKTNPLNK 400 Query: 396 EHLQPFERVY 405 + L+ F+ ++ Sbjct: 401 KDLEEFDDLF 410 >UniRef50_C9MRT4 Type I restriction-modification system, M subunit n=3 Tax=Prevotella RepID=C9MRT4_9BACT Length = 508 Score = 140 bits (354), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 114/374 (30%), Positives = 178/374 (47%), Gaps = 41/374 (10%) Query: 83 KKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANET 142 K +V+ VF +++ + + +V+ ++ +++ + R FGD+YEG+L+ ++ Sbjct: 110 KAIVKEVFEDLNQYMKNGILLRQVVNVINEIEFDDAT---DRHMFGDIYEGILKDL--QS 164 Query: 143 KSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGD 202 AG+++TPR L II L P E V D +GT GFL A Y++ Q D D Sbjct: 165 AGNAGEFYTPRALTDFIIQQLSPVLGETVGDFTSGTGGFLTSALNYLQKQVKTTD----D 220 Query: 203 TQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEG-NLDHGGAIRLGNTLGSDGENLPKAH 261 + FQ +A IG E P L++ N LLHD+E N+ H ++ T SD + K + Sbjct: 221 RRLFQ--KAVIGHEWKPLPYLLSITNLLLHDVESPNIRHCDSL---GTKMSDFKEGDKVN 275 Query: 262 IVATNPPFG----SAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLF- 316 ++A NPP+G +A+ +N F +S FM I+ L GRAAV+VPD LF Sbjct: 276 VIAMNPPYGGSTDAASKSNFPMEF--RSSETADLFMVLIMYRLKANGRAAVIVPDGFLFG 333 Query: 317 EGGKGTDIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDV 375 G I++ ++ +LHTI+RLP IF + TN+LFF ++ + T+ Sbjct: 334 TDGAKLAIKQKMLRDFNLHTIIRLPGSIFAPYTSIATNILFFNNERAEGADEGFS-TNKT 392 Query: 376 WVYDLRTNMPS----FGKRTPFTDEHLQPFERVY-----------GEDPHGLSPRTEGEW 420 W Y R +MP F K EH QP + GE + + E Sbjct: 393 WFY--RLDMPEGYKHFSKTKSMRLEHCQPICDWWNDRKEIASDELGEKARCFTAKELAEL 450 Query: 421 SFNAEETEVADSEE 434 FN ++ + EE Sbjct: 451 DFNFDQCKFPKDEE 464 >UniRef50_A3CUH5 N-6 DNA methylase n=4 Tax=cellular organisms RepID=A3CUH5_METMJ Length = 505 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 125/434 (28%), Positives = 199/434 (45%), Gaps = 65/434 (14%) Query: 4 NDLVAKLWKLCDNLRDGGVSYQ-NYVNELASLLFLKM------CKETGQEAEYLP----- 51 +DL +K+ L D GG+S + +++ L+F+K ++ A +P Sbjct: 5 SDLKSKIDTLWDRFWSGGMSNPLQSIEQMSYLIFMKRLEDMDGVEQNRARARGVPYTSVF 64 Query: 52 ---EGYRWDDLKSRIGQEQLQFYRKML------VHLGEDDKKLVQAVFHNVSTTITEPKQ 102 E RW K ++ L R + +H GE K L + I +P Sbjct: 65 EEHEECRWSSWKHYPAEQMLVHVRDKVFPFIQSLHNGE--KTLFAQQMRDAVFMIPKPSL 122 Query: 103 ITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHL 162 + V+ +D ++ ++RD GD+YE LL + + K+G Q+ TPR +I+ I+ L Sbjct: 123 LQEAVALIDEMN----ITAQNRDTQGDIYEYLLSQLSTAGKNG--QFRTPRHIIRMIVEL 176 Query: 163 LKPQPREVVQDPAAGTAGFLIEADRYV--KSQTNDLDDLD---------GDTQDFQIH-- 209 + P + + DPA GTAGFLI + ++ K + DL ++D GD Q H Sbjct: 177 VDPDITDRICDPACGTAGFLINSYEHIIRKYTSPDLLEVDDEGEYHNLIGDNITDQKHWE 236 Query: 210 ----RAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVAT 265 F G + R++LMN +LH I+ I L +TL + +V Sbjct: 237 KLWSDTFYGFDFDSTMTRISLMNLMLHGIK-----APHIELKDTLSKRYTEEERYTVVLA 291 Query: 266 NPPF-GSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKG-TD 323 NPPF GS ++I + T+ +L ++ +I+ L GG+ V+VPD VLF + + Sbjct: 292 NPPFKGSIDKSDINDSLSLGTTKTELLLVERMIQLLTIGGKCGVIVPDGVLFGSSRAHKE 351 Query: 324 IRRDLMDKCHLHTILRLPTGIF--YAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLR 381 +RR L+++ L I+ +P+GIF YA GV T VL F KG T VW YD+ Sbjct: 352 LRRMLLEENQLEGIVSMPSGIFKPYA-GVSTAVLIFVKG---------GKTGKVWFYDME 401 Query: 382 TNMPSFGKRTPFTD 395 + S + F D Sbjct: 402 ADGYSLDDKRTFID 415 >UniRef50_A5KSM6 N-6 DNA methylase n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KSM6_9BACT Length = 330 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 80/190 (42%), Positives = 97/190 (51%), Gaps = 32/190 (16%) Query: 281 FVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRL 340 F TSNKQL F+QHI L G+AAV+VPDNVLFEGG G IR+ L+ +HTILRL Sbjct: 154 FRTTTSNKQLNFVQHICSQLKVDGKAAVIVPDNVLFEGGAGETIRKKLLQTTEIHTILRL 213 Query: 341 PTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQP 400 PTGIFYA GVK NV+FF + Q T DVWVYD+RTN K + L Sbjct: 214 PTGIFYANGVKANVIFFDNRPASKEVQ----TKDVWVYDMRTNQHFTLKEKKLANADLAD 269 Query: 401 FERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKS 460 F + Y D N Q T R++KF+ + + T Sbjct: 270 FIKCYNPD----------------------------NRHQRSETERFKKFTYDEVVTRDK 301 Query: 461 DSLDISWLKD 470 +LDI WLKD Sbjct: 302 TNLDIFWLKD 311 >UniRef50_D2QLF2 Site-specific DNA-methyltransferase (Adenine-specific) n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QLF2_9SPHI Length = 502 Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 110/396 (27%), Positives = 185/396 (46%), Gaps = 57/396 (14%) Query: 28 VNELASLLFLKMCKETGQEAEYLPEGYR--------WD----DLKSRIGQEQLQFY---- 71 + +L +LFLK+ + E E L + Y+ W D + G E QF Sbjct: 29 IEQLGWMLFLKIFDDKDIEMELLADDYQSPIPTDCQWRNWAADNEGITGDELQQFVDLTL 88 Query: 72 ----RKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDF 127 + + V G L++ VF + + I + + ++ +D+ + R F Sbjct: 89 FPTLKNLPVKDGNRRALLIREVFEGNNNYMKSGINIRKICNKLNEIDF---NSSEDRHLF 145 Query: 128 GDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADR 187 GD+YEG+L++ ++ +G+++TPR + + + ++ P+ E++ DPA GT GFL+ A Sbjct: 146 GDLYEGILKEL--QSAGDSGEFYTPRAVTQFMTEMVNPRLGEIIFDPACGTGGFLVNAIE 203 Query: 188 YVKS-QTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE-GNLDHGGAIR 245 +++ + N +DD + + G E P LAL N +LHDIE N+++G + Sbjct: 204 HIRQREVNSVDD------RLTLQKTIRGCEYKPLPYELALTNLILHDIEVPNIEYGDS-- 255 Query: 246 LGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLC--FMQHIIETLHPG 303 LG S + + ++ NPPFG F ++ F+ I+ L Sbjct: 256 LGREYSSIRDR-DRVDVILANPPFGGTVANGNEGNFPANFRTRESADLFLVLIVNLLRTN 314 Query: 304 GRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIF--YAQGVKTNVLFFTKGT 361 GRAA+V+PD L G +R+ L++ C LHTI+RLP +F YA V TN+LFF K Sbjct: 315 GRAALVLPDGSLTGEGVKQRVRQKLLEDCDLHTIVRLPNSVFQPYAT-VATNLLFFEKKR 373 Query: 362 ---VANP-------------NQDKNCTDDVWVYDLR 381 +A P + D+ T ++W Y+ R Sbjct: 374 TTGLAAPDSDLPLFSNGETNDSDRYATREIWYYEHR 409 >UniRef50_Q3AQE5 Type I restriction modification enzyme methylase subunit n=10 Tax=Bacteria RepID=Q3AQE5_CHLCH Length = 579 Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 114/382 (29%), Positives = 177/382 (46%), Gaps = 54/382 (14%) Query: 55 RWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFH---NVSTTITEPKQITALVSNMD 111 RW + K +E L + + +D H N I +P + V +D Sbjct: 105 RWSEFKHMQAEEMLLHVQSKVFPFLKDMNGAESNFTHHMKNAVFIIPKPSLMVEAVKTVD 164 Query: 112 S----LDWYNGAHGKSRDDF-GDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQ 166 ++ + G++ D GD+YE LL + A K+G Q+ TPR +IK + L++PQ Sbjct: 165 EIFEIMEKDSQEKGQAFQDIQGDVYEMLLSEIAQAGKNG--QFRTPRHIIKLMTELVQPQ 222 Query: 167 PREVVQDPAAGTAGFLIEADRYVKSQ------------TNDLD--------DLDG----- 201 + + DPA GTAGFL+ A +Y+ +Q TN D D DG Sbjct: 223 LAQRIGDPACGTAGFLLGAYQYIVTQLAIKTSDHFRGVTNMTDRGAHTFQPDEDGFVRTS 282 Query: 202 ------DTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI-EGNLDHGGAIRLGNTLGSDG 254 +T + + G ++ RL LMN ++H I E N+D+ +TL Sbjct: 283 VASGLTETAQAILQSSLYGYDIDSTMVRLGLMNLMMHGIDEPNIDY------KDTLSKSY 336 Query: 255 ENLPKAHIVATNPPF-GSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN 313 + HIV NPPF GS +I T+ +L F+++I L GG A V+VP Sbjct: 337 NEEAEYHIVMANPPFTGSIDKGDINENLTLSTTKTELLFVENIYRLLKRGGTACVIVPQG 396 Query: 314 VLFEGGKG-TDIRRDLMDKCHLHTILRLPTGIF--YAQGVKTNVLFFTKGTVANPNQDKN 370 VLF G ++R+ L+++C L ++ +P+G+F YA GV T +L FTK + + Sbjct: 397 VLFGSGTAFKNLRQLLVERCELKAVITMPSGVFKPYA-GVSTAILLFTKVYESKEKVRQP 455 Query: 371 CTDDVWVYDLRTNMPSF-GKRT 391 T VW YD++++ S KRT Sbjct: 456 ATHQVWFYDMQSDGYSLDDKRT 477 >UniRef50_D1X0A9 N-6 DNA methylase n=2 Tax=Bacteria RepID=D1X0A9_9ACTO Length = 867 Score = 137 bits (346), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 133/429 (31%), Positives = 204/429 (47%), Gaps = 60/429 (13%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQ-NYVNELASLLFLKMCKE--------TGQEAEYLP 51 M +L +K+ ++ D GG+S + ++ LLF+K E + A+ P Sbjct: 1 MITGELKSKVGRVWDAFWSGGISNPLEVIEQITYLLFIKRLDEIQIRKDNRASRTAKPDP 60 Query: 52 --------EGYRWDDLKS-------RIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTT 96 + RW + K+ RI ++ + Y L +G D + + T Sbjct: 61 DPLFAEDQQELRWQNFKACDPEVMYRIVEQGVFPY---LRAMGGDGSTYSHHM-RDARFT 116 Query: 97 ITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLI 156 I P + +V +DS+ +S D GD+YE LL K A ++G Q+ TPR LI Sbjct: 117 IPGPNLLAKVVELLDSIAM------ESSDTAGDIYEYLLAKIATSGRNG--QFRTPRHLI 168 Query: 157 KTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLE 216 + ++ + +P+P + V DPA GTAGFL+++ YVK + LD + Q F G + Sbjct: 169 RLMVEMTQPKPDDEVCDPACGTAGFLVQSASYVKREHAKA-LLDVEQQAHFNASMFHGFD 227 Query: 217 LVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTL--GSDGENLPKAHIVATNPPFGSAAG 274 R+ MN LLH IE N D IR ++L S GE + ++ NPPF + Sbjct: 228 FDSTMLRIGSMNMLLHGIE-NPD----IRYRDSLVESSAGE-AERYSLILANPPFAGSLD 281 Query: 275 TNITRTFVHP---TSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKG-TDIRRDLMD 330 T + P T +L F+ + L PGGRAAV+VPD VLF K ++RR L++ Sbjct: 282 YESTAADLLPVVKTKKTELLFLALFLRLLKPGGRAAVIVPDGVLFGSTKAHKELRRTLVE 341 Query: 331 KCHLHTILRLPTGIF--YAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSF- 387 L +++LP+G+F YA GV T +L FT+ D TD+VW YD++ + S Sbjct: 342 DHKLDGVVKLPSGVFKPYA-GVSTAILLFTR-------TDSGGTDNVWFYDVQADGFSLD 393 Query: 388 GKRTPFTDE 396 +R P E Sbjct: 394 DRRNPLLPE 402 >UniRef50_C0E6A6 Putative uncharacterized protein n=2 Tax=Corynebacterium RepID=C0E6A6_9CORY Length = 500 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 103/333 (30%), Positives = 161/333 (48%), Gaps = 33/333 (9%) Query: 86 VQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSG 145 + +F + S I+ P + + ++ LD K+RD GD+YE +L K A T Sbjct: 81 LAVLFRDASFGISSPSTLWKTMELINDLDI------KNRDITGDLYEYMLSKLA--TSGT 132 Query: 146 AGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQD 205 GQ+ TP+ +I ++ L+ P+ E + DPA GTAGFLI A ++K +DL + Sbjct: 133 NGQFRTPQHIIDLLVELMAPKLGERIIDPACGTAGFLINASEWMKRTYR--EDLYNTNER 190 Query: 206 FQIHR-AFIGLELVPGTRRLALMNCLLHDIEG-NLDHGGAIRLGNTLGSDGENLPKAHIV 263 + +R F G + R+A MN +H E N+ + ++ + G +L ++ Sbjct: 191 ERFYRDTFTGYDFDRSMVRIAAMNSYMHGFEKPNISYRDSLGEFPEMSGGGGDL--YDVI 248 Query: 264 ATNPPFGSAAGTNITRTFVHPTSN---KQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGK 320 NPPF + + +N +L F+ + L GGRAAV+VP+ VLF K Sbjct: 249 LANPPFSGSLDAERVDPVIRKLANTKKTELLFLARFLTLLKVGGRAAVIVPEGVLFGSTK 308 Query: 321 GTDI-RRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVY 378 + R++L++ L +++LP+G+F GV T VL FTK D TD+VW Y Sbjct: 309 AHKVLRKELVENQKLDAVIKLPSGVFKPYSGVSTAVLCFTK-------TDSGGTDEVWFY 361 Query: 379 DLRTNMPSF-GKRTPFTDEHLQPFERVYGEDPH 410 D+ + S KRTP E+L G PH Sbjct: 362 DMLADGRSLDDKRTPLLPENL------LGPTPH 388 >UniRef50_A6W079 N-6 DNA methylase n=16 Tax=Bacteria RepID=A6W079_MARMS Length = 545 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 103/296 (34%), Positives = 149/296 (50%), Gaps = 44/296 (14%) Query: 128 GDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADR 187 GD+YE LL K T GQ+ TPR +I +I ++ PQP + + DP+ GTAGFL Sbjct: 157 GDIYEYLLSKLT--TAGINGQFRTPRHIIDAMIEIIDPQPWDTICDPSCGTAGFLARTME 214 Query: 188 YVK----SQTNDLDDLDGDT-------QDFQIHRA---FIGLELVPGTRRLALMNCLLHD 233 Y+ S N D +G+ ++++ H + F G + R++ MN +LH Sbjct: 215 YLNRKHTSPENIWTDEEGNQHYPGDLLENYREHISDDMFWGFDFDTTMLRVSSMNMMLHG 274 Query: 234 IEGNLDHGGAIRLGNTLG-SDGENLPKAH-----IVATNPPF-GSAAGTNITRTFVH--P 284 + +G + +TL S EN P+ ++ NPPF GS TN + Sbjct: 275 V-----NGSNVLYQDTLNKSIRENFPQQEENFFDVILANPPFKGSLDETNTNPELLSMVK 329 Query: 285 TSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKG-TDIRRDLMDKCHLHTILRLPTG 343 T +L F+ HI+ +L GGRAAV+VPD VLF K +R++L++ L I+ LP+G Sbjct: 330 TKKTELLFVAHILRSLKLGGRAAVIVPDGVLFGSSKAHQQLRQELIENNQLEGIISLPSG 389 Query: 344 IF--YAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSF-GKRTPFTDE 396 +F YA GV T +L FTKG T+ VW YDL+ + S KRTP E Sbjct: 390 VFKPYA-GVSTAILLFTKG---------GTTERVWFYDLQADGLSLDDKRTPLKGE 435 >UniRef50_Q7MJG0 Type I restriction-modification system methyltransferase subunit n=2 Tax=Vibrio RepID=Q7MJG0_VIBVY Length = 638 Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 92/288 (31%), Positives = 137/288 (47%), Gaps = 42/288 (14%) Query: 129 DMYEGL------LQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFL 182 D+ EG+ L N + +G Y++PRPLIK ++ +L P+P V DPA GT G Sbjct: 135 DLSEGIEIDFDHLLLNMVKDSGSSGAYYSPRPLIKAMVRVLNPKPLATVYDPAMGTGGVF 194 Query: 183 IEADRYVKSQT--NDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDH 240 +EA ++ K ++ N L +FIG +L P + +N LL+DI D Sbjct: 195 VEAKKHAKGKSCFNGL--------------SFIGNDLSPFAHLIGALNLLLNDI----DI 236 Query: 241 GGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNK-QLCFMQHIIET 299 G + L D + + V + PFG + H S + F++H ++ Sbjct: 237 SGVSISDSLLDRDCQ---QYDFVISGVPFGKVNELTKYEYYYHGYSGSLEAMFLKHTMDK 293 Query: 300 LHPGGRAAVVVPDNVLFEGGKGTD-IRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFF 357 L GGRAA+V+PD +LF D ++R L+ + +LH +L LP G GVK +VLFF Sbjct: 294 LAKGGRAAIVIPDGILFGNASHLDELKRQLLTQFNLHAVLSLPKGTLAPYSGVKVSVLFF 353 Query: 358 TKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVY 405 TV+ D+W Y+LRTN P K TD + F +Y Sbjct: 354 -DNTVSEK--------DIWFYELRTNKP-LSKVNSITDSDFEDFTSLY 391 >UniRef50_B0BR03 Type I restriction-modification system M subunit n=50 Tax=Bacteria RepID=B0BR03_ACTPJ Length = 489 Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 119/436 (27%), Positives = 199/436 (45%), Gaps = 69/436 (15%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQ-NYVNELASLLFLKMCKETGQEAE--------YLP 51 M+ N+LV +L + N D G++ + ++ +LFLK+ QE E LP Sbjct: 1 MSLNNLVKRLQDVMRN--DAGINGDAQRIEQIVWILFLKIYDAKEQEWEQIDDNYHSILP 58 Query: 52 EGYRWD-------DLKSRIGQEQLQFYRKMLVHLGED---------DKKLVQAVFHNVST 95 + RW D K+ G E L F L ++ ++K+++A F + + Sbjct: 59 DFLRWQNWAKDNKDGKAMTGDELLNFVNNELFPALKNLPISAETPMNQKIIRAAFEDNNN 118 Query: 96 TITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPL 155 + + +++ +D + N + R FGD+YE +L+ + ++ AG+++TPR + Sbjct: 119 YMKNGILLRQVINIIDEI---NFEQYQERHAFGDIYENILK--SLQSAGNAGEFYTPRAV 173 Query: 156 IKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGL 215 + ++KP+ E + D A GT GFL A + + Q + ++D + + + G+ Sbjct: 174 TDFMAKMIKPRLGEKIADFACGTGGFLTSALKELDKQNDSINDKN------LLSNSVYGI 227 Query: 216 ELVPGTRRLALMNCLLHDIEG-NLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAG 274 E L + N LLHDI+ N+ H A L + EN K ++ NPP+G + Sbjct: 228 EKKALPHLLCITNLLLHDIDNPNVHHDNA--LEKPVKDYTEN-DKFDVILMNPPYGGSEI 284 Query: 275 TNITRTFVHPTSNKQLC--FMQHIIETLHPGGRAAVVVPDNVLFEGGKGTD-----IRRD 327 I F + + FM I+ L GR A+V+PD LF GTD I++ Sbjct: 285 EQIKTNFPSALRSSETADLFMSVIMYRLKKNGRVAIVLPDGFLF----GTDNAKMAIKQK 340 Query: 328 LMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMP- 385 LM + +LHT++RLP +F + TN+LFF + T + W Y R +MP Sbjct: 341 LMSEMNLHTVIRLPHSVFAPYTSITTNILFF---------DNTEPTKETWFY--RLDMPQ 389 Query: 386 ---SFGKRTPFTDEHL 398 +F K P EH Sbjct: 390 GYKNFSKTKPMKLEHF 405 >UniRef50_A5VLF8 N-6 DNA methylase n=17 Tax=Bacteria RepID=A5VLF8_LACRD Length = 517 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 102/363 (28%), Positives = 182/363 (50%), Gaps = 34/363 (9%) Query: 128 GDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADR 187 GD+YE LL K + T GQ+ TPR +IK I+ L+ PQ + + DPAAGTAGFL+E+ Sbjct: 173 GDVYEYLLGKLS--TAGRNGQFRTPRHIIKMIVELMNPQVTDKICDPAAGTAGFLVESAE 230 Query: 188 YVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEG-NLDHGGAIRL 246 +++ + + + + + + + F G + R+ MN L H ++ N+++ ++ Sbjct: 231 FLQDKKKEEIFYNKENRHYFHNEMFTGYDTDQTMLRIGAMNMLSHGVDNPNVEYQDSLSE 290 Query: 247 GNTLGSDGENLPKAHIVATNPPF-GSAAGTNITRTF--VHPTSNKQLCFMQHIIETLHPG 303 NT + + ++ NPPF GS ++++ + T +L F+ ++ L G Sbjct: 291 QNT------DRDEYSLIMANPPFKGSLDYNSVSKDLLKICKTKKTELLFVTLFLQMLKVG 344 Query: 304 GRAAVVVPDNVLFEGGKG-TDIRRDLMDKCHLHTILRLPTGIF--YAQGVKTNVLFFTKG 360 GR A +VPD VLF K IR+++++ +L ++ +P+G+F YA GV T +L FTK Sbjct: 345 GRCACIVPDGVLFGSSKAHKSIRKEIIENNNLEAVISMPSGVFKPYA-GVSTAILIFTK- 402 Query: 361 TVANPNQDKNCTDDVWVYDLRTNMPSF-GKRTPFTDEHL-QPFERVYGEDPHGLSPRTEG 418 TD VW YD+ + S KRTP + + ER D R + Sbjct: 403 ------TGNGGTDKVWFYDMTADGFSLDDKRTPVKENDIPDIIERFNHLDKE--VDRKKT 454 Query: 419 EWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADS 478 SF ++ ++ D+ D L+ +R+++ + ++ ++ + I+ ++ D D+ Sbjct: 455 NKSFMVDKKDIVDN------DYDLSINRYKEIEYKPVKYPPTEEI-IAEIEKLDKEANDA 507 Query: 479 LPE 481 L E Sbjct: 508 LQE 510 >UniRef50_B4S214 Type I restriction-modification system methyltransferase subunit n=1 Tax=Alteromonas macleodii 'Deep ecotype' RepID=B4S214_ALTMD Length = 703 Score = 130 bits (328), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 90/297 (30%), Positives = 146/297 (49%), Gaps = 34/297 (11%) Query: 111 DSLDWYNGAHGKSRDD---FGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQP 167 D +D NG H S ++ +YE +L + + +G+++TPRP+++ ++ ++ PQ Sbjct: 144 DVVDKINGIHFNSSEEMHTLSRLYETML-REMRDAAGDSGEFYTPRPVVRFMVEVMDPQL 202 Query: 168 REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALM 227 E V DPA GT GFL+EA +++ Q ++D ++ + G E L M Sbjct: 203 GESVLDPACGTGGFLVEAFEHLERQCKTVED-----REVLQESSIFGGEAKSLPYLLVQM 257 Query: 228 NCLLHDIE-GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVH--P 284 N LLH +E +D ++R D + + ++ +NPPFG I F Sbjct: 258 NLLLHGLEYPRIDPENSLRFPLREMGDKD---RVDVILSNPPFGGEEEKGILGNFPEDMQ 314 Query: 285 TSNKQLCFMQHIIETLH-------PGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTI 337 T+ F+Q I+ L GGRAAVVVP++VL++GG +R+ L+ +LHTI Sbjct: 315 TAETVQLFLQLIMRKLKRKGNGSVTGGRAAVVVPESVLYDGGVAQRVRKQLLSDFNLHTI 374 Query: 338 LRLPTGIFYAQG-VKTNVLFFTKGTVANPNQDKNC-TDDVWVYDLRTNMPSFGKRTP 392 +RLP G+F +++N+LFF D+N T VW Y + G + P Sbjct: 375 IRLPKGVFEPYSDIQSNILFF----------DRNGPTKGVWFYQHEVPVERRGMKNP 421 >UniRef50_C8W944 N-6 DNA methylase n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8W944_ATOPD Length = 506 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 117/435 (26%), Positives = 198/435 (45%), Gaps = 69/435 (15%) Query: 4 NDLVAKLWKLCDNLRDGGVSY-QNYVNELASLLFLKMCKETGQEAEYL-----PEGY--- 54 +D+ ++W +GG++ Q + +L L+F++ + E+E + P+ Y Sbjct: 11 DDVWQRMW-------EGGITNPQEVITQLTYLMFIRSLDDKELESERMEELGIPQEYLFP 63 Query: 55 --------RWDDLKSRIGQEQLQFYRKML---VHLGEDDKKLVQAVFHNVSTTITEPKQI 103 RW +K+ ++ L+ R + + DD +++ + + I P+ + Sbjct: 64 QTSEGQEMRWCSIKNMAPEKMLEAIRDKVFPFIKTLHDDTPFARSM-RDATFGINNPRTL 122 Query: 104 TALVSNMDSL--DWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIH 161 VS +DSL D+ N DD GD+YE +L K + T GQ+ TP+ + ++ Sbjct: 123 QKAVSGIDSLMNDFEN-----DMDDLGDLYEYMLSKLS--TAGTNGQFRTPKHIRDMMVA 175 Query: 162 LLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLD-------------DLDGDTQDFQI 208 ++ P+P E + DPA GTAGFLI A ++++ + D D DG+ Sbjct: 176 MVDPRPGERICDPAMGTAGFLISAADHLRNDSAMKDDDWTVFAGEAAEKDADGNVVAEGR 235 Query: 209 HRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPP 268 H+ F G E R++ MN +LH I I+L +++ K +V NPP Sbjct: 236 HQ-FSGGETDQTMFRISAMNLMLHGI-----SQPDIKLVDSVSKQNTTSDKYDLVLANPP 289 Query: 269 F-GSAAGTNITRTFVHPTSNKQ--LCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGT--D 323 F GS +I + ++KQ L F+ + L GGR A +VP+ VLF Sbjct: 290 FTGSVDTEDIAPSLKAICNSKQTELLFVALFLRMLKVGGRCACIVPNGVLFRTNSKAYRQ 349 Query: 324 IRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRT 382 +R++L+D L I+ +P+G+F GV T VL FTK TD VW+Y++ Sbjct: 350 LRQELVDNQQLRAIIYMPSGVFKPYSGVSTAVLVFTKTNAGG-------TDKVWLYNMEG 402 Query: 383 NMPSFGKRTPFTDEH 397 + + + D H Sbjct: 403 DGYTLDDKRDIDDAH 417 >UniRef50_B4RYU9 Type I restriction-modification system methyltransferase subunit n=5 Tax=Bacteria RepID=B4RYU9_ALTMD Length = 548 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 111/391 (28%), Positives = 181/391 (46%), Gaps = 72/391 (18%) Query: 52 EGYRWDDLKSRIGQEQLQFYRKMLVHL-----GEDD---KKLVQAVFHNVSTTITEPKQI 103 + YRW K++ Q + R + GED K + A+F + + Sbjct: 69 DSYRWSKFKNQDPQVMFELVRDKIFPFIKTINGEDTTFAKHMRDAIF-----MVPTAGLL 123 Query: 104 TALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL 163 +V+ +D +D RD GD+YE +L K ++ GQ+ TPR +I+ ++ + Sbjct: 124 DRVVTMIDKIDM------DDRDTKGDLYEYMLSKL--QSSGTNGQFRTPRHIIQMMVQMT 175 Query: 164 KPQ----PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVP 219 P+ +V+ DPA+GT GFL+ A+ YV++ +++ F ++ F + Sbjct: 176 APKLDGNKSDVICDPASGTCGFLMAAEEYVRNTQGGALMRPENSKHFH-NQMFNAYDFDQ 234 Query: 220 GTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGE-NLP-KAHIVATNPPF-GSAAGTN 276 R+ MN +LH +E + + ++L GE N+ K ++ NPPF GS + + Sbjct: 235 HMLRIGAMNLMLHGVEHPV-----VEYRDSLSDQGEHNIKDKFTLILANPPFKGSVSYDD 289 Query: 277 ITRTFVH--------------------------PTSNKQLCFMQHIIETLHPGGRAAVVV 310 + + P+ +L F+ I+ L PGGRAAVVV Sbjct: 290 LAPDLLTALGKTPKKATAKTETDEEGNKKKKKGPSEKTELLFLALILRMLQPGGRAAVVV 349 Query: 311 PDNVLFEGGKG-TDIRRDLMDKCHLHTILRLPTGIF--YAQGVKTNVLFFTKGTVANPNQ 367 PD VLF K +IR+ L+++ L ++ LP+G+F YA GV T +LFFTK Sbjct: 350 PDGVLFGSTKSHKEIRKTLVEEHKLEAVVSLPSGVFKPYA-GVSTAILFFTK-------T 401 Query: 368 DKNCTDDVWVYDLRTNMPSF-GKRTPFTDEH 397 + TD+VW YD++ + S KRTP E Sbjct: 402 NDGGTDNVWFYDMQADGFSLDDKRTPLIKEQ 432 >UniRef50_A1ZTI9 Type I restriction-modification system specificity subunit n=2 Tax=Bacteria RepID=A1ZTI9_9SPHI Length = 921 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 116/466 (24%), Positives = 194/466 (41%), Gaps = 108/466 (23%) Query: 10 LWKLCDNLRDGGVSYQNYVNELASLLFLK---------------MCKETGQEAE------ 48 L++ CD LR G + Y + +LFLK ++ G AE Sbjct: 14 LFQACDILR-GNMDASEYKEYIFGILFLKRLNDKFEQDQEKRRKALEKKGLAAEVVARAL 72 Query: 49 --------YLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFH--------- 91 Y+PE RW G++ +Q +K H+G+ K + A+ Sbjct: 73 NKANAYDYYIPENARWK------GKDGIQHLKK---HVGDALNKALAAIEDANLDKLSGV 123 Query: 92 ----NVSTTITEPKQ------ITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANE 141 + + TI + K+ + + + D++D + + D G YE L++ A+ Sbjct: 124 LKSIDFNRTIGKNKKTLDDTKLINFIQHFDTVD-LRDENFEFPDILGAAYEYLIKFFADS 182 Query: 142 TKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDG 201 G+++TP ++K ++ LL+P P V DP G+ G LI+ YV+++ N+ L Sbjct: 183 AGKKGGEFYTPAEVVKLMVQLLEPAPNAEVYDPTCGSGGMLIQCKNYVEARYNNASKL-- 240 Query: 202 DTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGS-----DGEN 256 +F G EL T L MN L HDI + I G+T+ + DGE Sbjct: 241 ---------SFYGQELSGTTWALCKMNMLFHDI-----YDAKIEQGDTINNPLHVVDGE- 285 Query: 257 LPKAHIVATNPPFGS-AAGTNIT------RTFVHPTSNKQLCFMQHIIETLHPGGRAAVV 309 L + +V NPPF + NI R ++ S F+QH++ L GR VV Sbjct: 286 LQRFDVVMANPPFSADYKQDNIIGFKDRFRHWMPEKSKADFMFVQHMVRVLKDNGRMGVV 345 Query: 310 VPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTV------- 362 +P VLF G D+R L+++ +L ++ LP +FY G+ +++ K Sbjct: 346 MPHGVLFRGSTEKDMRHWLLERGYLDAVIGLPASLFYGTGIPASLIIINKKGADKRRKVL 405 Query: 363 ---------ANPNQDKNCTDDV----WVYDLRTNMPSFGKRTPFTD 395 NQ+K +D+ +VY R +P + + + D Sbjct: 406 FINADREYKEEKNQNKLRPEDISKITYVYHQRQELPQYSRLMSYND 451 >UniRef50_A5GB18 N-6 DNA methylase n=2 Tax=Bacteria RepID=A5GB18_GEOUR Length = 549 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 117/440 (26%), Positives = 201/440 (45%), Gaps = 69/440 (15%) Query: 3 NNDLVAKLWKLCDNLRDGGVSYQ-NYVNELASLLFLKMC--KETGQE---------AEYL 50 N DL KL + D L GGV+ Y+ +++ L++LK+ +ET +E + +L Sbjct: 2 NADLRRKLDHITDTLWAGGVTNPVTYIEQISFLIYLKLLDEEETSRELRVRLGAGNSRFL 61 Query: 51 ----PEGYRWDDLKSRIGQEQLQFYR----KMLVHLGEDDKKLVQAVFHNVSTTITEPKQ 102 E +RW + + G E F R + L +D+ ++ + F + I E Sbjct: 62 FPDQAERFRWSKWRFKSGIELNDFIRGEVFPYMASLVKDEPQVAE-YFRDARLEINEVDV 120 Query: 103 ITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHL 162 + +V +DS+++ D GD++E LL +G Q+ TP+ + ++ + Sbjct: 121 LKQVVDELDSIEF----RKLGPDVKGDIFEYLLTHLGQSALNG--QFRTPKQIRSFMVAM 174 Query: 163 LKPQPREVVQDPAAGTAGFLIEADRYVKSQTND-------------------LDDLDGDT 203 + P+ + + DPA GTAGFLI+A Y+ ++ ++ LD+ Sbjct: 175 VDPEFGDTIDDPACGTAGFLIDAVEYLLAKYSENPQEMPIYGEEWLERKGLTLDEAKKQM 234 Query: 204 QDFQIHR---------------AFIGLELVPGTRRLALMNCLLHDI-EGNLDHGGAIRLG 247 + Q +R + G ++ R+++MN +LH I + L + Sbjct: 235 PNLQTYRKGPGEKIPDWGILEASIYGTDVSRQMMRISMMNLVLHGIGKARLKRANVLSEM 294 Query: 248 NTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNK-QLCFMQHIIETLHPGGRA 306 L D N K + +NPPF + R + S K +L F+ ++E+L PGGR Sbjct: 295 GGLTEDDLNR-KYKVSLSNPPFAGMLPKDSIRHDLPTNSKKSELLFLGLMMESLAPGGRC 353 Query: 307 AVVVPDNVLF-EGGKGTDIRRDLMDKCHLHTILRLPTGIF--YAQGVKTNVLFFTKGTVA 363 AVVVP+ LF G ++R+ L+ + ++ LP G+F YA GVKT+VL F + Sbjct: 354 AVVVPEGALFGSTGAHVELRKKLLQDFEVLAVVSLPAGVFKPYA-GVKTSVLVFRR-PAN 411 Query: 364 NPNQDKNCTDDVWVYDLRTN 383 P Q K T VW Y+++ + Sbjct: 412 PPEQGKPATAKVWFYEIKND 431 >UniRef50_C4WKW1 Type I restriction enzyme EcoEI specificity protein n=1 Tax=Ochrobactrum intermedium LMG 3301 RepID=C4WKW1_9RHIZ Length = 865 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 98/347 (28%), Positives = 167/347 (48%), Gaps = 45/347 (12%) Query: 52 EGYRWDDLKSR--IGQEQLQFYRKMLVHLGEDD--KKLVQAVFHNVSTTITEPKQITALV 107 E YRW L + GQ+ L Y + L ++ +++ KL + +F N +P+ + A + Sbjct: 62 ERYRWAKLVAPGVSGQDMLNTYSEALTNMVQNEGLPKLFRDIFRNAYLPYRDPETLRAFL 121 Query: 108 SNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQP 167 ++S + + + GD +E LL + ++ AGQ+ TPR +I ++ ++ PQ Sbjct: 122 REINSFTYDHS------EKLGDAFEYLL--SVLGSQGDAGQFRTPRHIIDFMVEIINPQK 173 Query: 168 REVVQDPAAGTAGFLIEADRYVKSQ------TNDLDDLDGDTQD---------------- 205 EV+ DPA GTAGFLI A +++ Q ++ +GD + Sbjct: 174 NEVIMDPACGTAGFLISAYKHILKQNSTGVVNSNGASTEGDAAEQALESPMRYPGDLLQP 233 Query: 206 ---FQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHI 262 ++ R G ++ P RL+L+N LH G D + +TL S+ + A + Sbjct: 234 DDRARLARNIRGYDISPDMVRLSLVNLYLH---GFADP--KVEEYDTLTSEDKWTETADV 288 Query: 263 VATNPPFGSAAGTNITRT-FVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKG 321 + NPPF S G T F + ++ F+ +I E L P GRAA+VVP+ ++F+ Sbjct: 289 ILANPPFMSPKGGIKPHTRFQVQSKRSEVLFVDYIAEHLTPNGRAAIVVPEGIIFQSQSA 348 Query: 322 TDIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQ 367 R ++ + HL ++ LP G+F GVKT++L + VA +Q Sbjct: 349 YVALRKMLVENHLAAVISLPAGVFNPYSGVKTSILILDRA-VAKASQ 394 >UniRef50_C3PKU9 Type I restriction enzyme M protein n=8 Tax=Bacteria RepID=C3PKU9_CORA7 Length = 590 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 118/424 (27%), Positives = 194/424 (45%), Gaps = 52/424 (12%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQ-NYVNELASLLFLKMCKE--------------TGQ 45 + NN V ++W D GG+S + + + LLF+K E T Sbjct: 72 LKNN--VDRIW---DTFWSGGISNPVSVIEQFTYLLFIKDLDERQVQIDKRRALGDPTAT 126 Query: 46 EAEY--LPEGYRWDDL--KSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPK 101 E + + RW +L I + + K+ + E Q N S I Sbjct: 127 EDIFDASQQDLRWRNLIEDRDIARRKATIINKVFPFIKEMGGTGFQEHMANASFEIESEA 186 Query: 102 QITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIH 161 ++ ++ +D L H ++D GD+YE +L K + T GQ+ T +I+ ++ Sbjct: 187 TLSRVMELIDQL------HFSNKDMKGDLYEYMLDKLS--TSGTNGQFRTTSHIIELLVA 238 Query: 162 LLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGT 221 L++P P++ + DPA GTAGFL+ A+ ++ + + D + DT+ + G + Sbjct: 239 LMEPTPQQRIIDPACGTAGFLVAANDWI-AHHHRADLFNKDTRTTFTNEGLTGFDFDKTM 297 Query: 222 RRLALMNCLLHDI-EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPF-GSAAGTNITR 279 R+A MN +H E N+ + +++ T + +L V NPPF GS + Sbjct: 298 VRIAAMNMFMHGFEEPNISYRDSLQQLPTTFDEAFDL-----VLANPPFAGSLDKDAVDP 352 Query: 280 TFVHPTSNK--QLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKG-TDIRRDLMDKCHLHT 336 T+ K ++ F+ ++ L PGGRAAV+VP+ VLF K +R+ L++ L Sbjct: 353 KLKSVTTAKKTEILFVHRFLQLLKPGGRAAVIVPEGVLFGSTKAHKALRKTLVEDQRLDA 412 Query: 337 ILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSF-GKRTPFT 394 +++LP+G+F GV T VL FT+ D TD+VW YD+ + S KRTP Sbjct: 413 VIKLPSGVFKPYSGVSTAVLCFTR-------TDSGGTDEVWFYDVTADGYSLDDKRTPLL 465 Query: 395 DEHL 398 D L Sbjct: 466 DAPL 469 >UniRef50_C9KLJ9 Type I restriction-modification system, M subunit n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KLJ9_9FIRM Length = 490 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 108/383 (28%), Positives = 179/383 (46%), Gaps = 61/383 (15%) Query: 50 LPEGYRWDDLK-------SRIGQEQLQFYRKMLVHLGE--------DDKKLVQAVFHNVS 94 +PE YRW + + G+E L+F + L K++V+ +F + Sbjct: 59 IPEPYRWQNWAHDDGTGTAYTGEELLEFVNDLFTVLKNLSITPDMPKKKRIVKTMFEETN 118 Query: 95 TTITEPKQITALVSNMDSLDW--YNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTP 152 + + + +++ +D +D Y+ H GD+YE +L++ ++ AG+++TP Sbjct: 119 QYMKDGVLLRQVINVIDDIDLESYDNMHA-----LGDIYETILKEL--QSAGRAGEFYTP 171 Query: 153 RPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAF 212 R + + ++P E + D A GT GFL+ R ++ Q DD + H + Sbjct: 172 RAVTDFMADRIEPHLGERMADFACGTGGFLVSWLRELEKQIAAPDD-----RALWNHSVY 226 Query: 213 IGLELVPGTRRLALMNCLLHDIEG-NLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGS 271 G+E LA+ N LLH ++ ++DHG ++ L + L D K + NPP+G Sbjct: 227 -GIEKKQFPYMLAITNLLLHGVDNPDIDHGNSL-LHDVL--DYTEKDKFDKILMNPPYGG 282 Query: 272 AAGTNITRTFVHPTSNKQLC--FMQHIIETLHPGGRAAVVVPDNVLFEGGKGTD-----I 324 + ++ F ++ + FM I+ L GGRAAVV+PD LF GTD I Sbjct: 283 SEKKDVMSHFPDDLADSETADLFMSVILYRLKQGGRAAVVLPDGFLF----GTDNTKVNI 338 Query: 325 RRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTN 383 ++ LM +C LHTI+RLP +F + TN+LFF + + T+ +W Y R + Sbjct: 339 KKKLMAECDLHTIVRLPGSVFAPYTSITTNILFFDR---------THPTEKIWFY--RLD 387 Query: 384 MPS----FGKRTPFTDEHLQPFE 402 MP F K P EH P + Sbjct: 388 MPEGYKHFSKTKPMRLEHFDPVK 410 >UniRef50_C7RVC4 N-6 DNA methylase n=2 Tax=Bacteria RepID=C7RVC4_9PROT Length = 606 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 106/373 (28%), Positives = 167/373 (44%), Gaps = 71/373 (19%) Query: 54 YRWDDLKSR------------IGQE-----------QLQFYRKMLVHLGE--DDKKLVQA 88 YRW D +R IGQE L Y + L LGE +++V Sbjct: 87 YRWRDWAAREDGINGDELLAFIGQEVTVRADGKVGKGLFSYLRGLAGLGEKGSQREVVAN 146 Query: 89 VFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDD---FGDMYEGLLQKNANETKSG 145 VF V + + +++ + NG H +S ++ +YE +L + + Sbjct: 147 VFKGVQNRMVSGYLLRDIINKI------NGIHFRSSEEIHTLSHLYESML-REMRDAAGD 199 Query: 146 AGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQD 205 +G+++TPRP+++ ++ + P+ E V DPA GT GFL+ A ++ +Q + + Sbjct: 200 SGEFYTPRPVVRFMVQVTDPKLGETVLDPACGTGGFLVGAYDHIAAQVTT----PAEWRK 255 Query: 206 FQIHRAFIGLELVPGTRRLALMNCLLHDIEG-NLDHGGAI-RLGNTLGSDGENLPKAHIV 263 Q F G E P L MN LLH +E + +G + R N +G GE + ++ Sbjct: 256 LQRETLF-GQEAKPLPYMLVQMNLLLHGLEAPQIAYGNTLDRRINEIGH-GE---RVDVI 310 Query: 264 ATNPPFGSAAGTNITRTFV--HPTSNKQLCFMQHIIETLHP-------------GGRAAV 308 TNPPFG I F T+ F+Q+I+ L GGRAAV Sbjct: 311 LTNPPFGGEEEVGIKANFPPNMQTAETTQLFLQYIMRKLRVVGAPVRGGKPAARGGRAAV 370 Query: 309 VVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQ 367 VVP+ LF G I+ +++ + LHTI+RLP G+F + N+LFF +G Sbjct: 371 VVPNGTLFGDGISAVIKEEMLKEFRLHTIVRLPQGVFAPYTDIPANLLFFERG------- 423 Query: 368 DKNCTDDVWVYDL 380 TD +W Y++ Sbjct: 424 --GPTDTIWYYEM 434 >UniRef50_A7IDE4 N-6 DNA methylase n=3 Tax=Proteobacteria RepID=A7IDE4_XANP2 Length = 710 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 105/335 (31%), Positives = 158/335 (47%), Gaps = 43/335 (12%) Query: 79 GEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDD---FGDMYEGLL 135 G + +V AVF ++ T + D ++ N H S +D G MYE LL Sbjct: 131 GRQRRDVVSAVFRDLRNYATSGYVLR------DVINLVNDIHFDSTEDIQTLGRMYETLL 184 Query: 136 QKNANETKSGAGQ---YFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQ 192 + E + AGQ ++TPRP+++ ++ ++ P+ E V DPA GT GFL A ++K Sbjct: 185 R----EMRDAAGQNGEFYTPRPVVRFMVQVIDPKLSETVLDPACGTGGFLAAAFDHMKPS 240 Query: 193 TNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEG-NLDHGGAIRLGNTLG 251 + ++ ++ G E LA MN LLH +E +++ G A+R L Sbjct: 241 ADTVEK-----REILQRSTLRGGEDSSLPFLLAQMNLLLHGLEAPDIEFGNALRF--KLT 293 Query: 252 SDGENLPKAHIVATNPPFGSAAGTNITRTFV--HPTSNKQLCFMQHIIETLHPGG--RAA 307 GE + ++ TNPPFG I F T+ L F+Q I+ L GG RA Sbjct: 294 EIGER-DRVEVILTNPPFGGEEEAGILTNFPDDRRTAETALLFLQLIMRRLKRGGHGRAG 352 Query: 308 VVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFF-TKGTVANP 365 VVVP+ +LF G I+ DL+++ +LHTI+RLP G F + TN++FF T G Sbjct: 353 VVVPNGILFGDGIAARIKADLLEQFNLHTIVRLPEGTFAPYTDIPTNIIFFDTSGP---- 408 Query: 366 NQDKNCTDDVWVYD--LRTNMPSFGKRTPFTDEHL 398 T D+W ++ L + K P E L Sbjct: 409 ------TGDIWYWEQPLPGGRRKYSKTQPLLYEEL 437 >UniRef50_B3CDF6 Putative uncharacterized protein n=1 Tax=Bacteroides intestinalis DSM 17393 RepID=B3CDF6_9BACE Length = 498 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 127/488 (26%), Positives = 222/488 (45%), Gaps = 72/488 (14%) Query: 30 ELASLLFLKMCKETGQEAEYL-------------PEG---------------YRWDDLKS 61 ++ LLF+KM + +E E + PEG RW K Sbjct: 31 QITYLLFMKMLDDKQREKEAIANLTGDVLLNPTFPEGVWRNPSTDKDVPYHEMRWHVFKE 90 Query: 62 RIGQEQLQFYRK----MLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYN 117 + L R L H+G++ +A+ + IT + ++ ++ +++++ + Sbjct: 91 MEPTKMLDRVRNDVFIFLRHVGKEGSAYRKAM-EDTVFQITNARLLSRVIESIENIT-SD 148 Query: 118 GAHGKSRDDFGDMYEGLLQKNANETKSGA-GQYFTPRPLIKTIIHLLKPQPREVVQDPAA 176 GA D GD+YE +L A SG GQ+ TPR +I+ ++ L++P + + DPA Sbjct: 149 GA-----DMMGDVYEYMLGIMA---ASGTNGQFRTPRHIIRMMVELMRPTLNDTICDPAM 200 Query: 177 GTAGFLIEADRYV-KSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI- 234 G+AGF++EA +++ + Q++DL ++ G+ F+ F G + R+ MN +LHD+ Sbjct: 201 GSAGFIMEAAKFITEHQSDDLLNI-GEGDRFR-KEIFHGSDSDASMLRIGCMNMMLHDVD 258 Query: 235 EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPF-GSAAGTNITRTFVHPTSNK--QLC 291 E NL + N+L + + + + NPPF GS +I T K +L Sbjct: 259 EPNLYY------RNSLSDENNDTNRYTLCLANPPFAGSLDTDDIAHTLKAAVKTKKTELL 312 Query: 292 FMQHIIETLHPGGRAAVVVPDNVLFEGGKG-TDIRRDLMDKCHLHTILRLPTGIFYA-QG 349 F+ ++ L GGR A +VPD VL + IR L+DK + ++ +P+G+F G Sbjct: 313 FLALMMRMLQSGGRCASIVPDTVLTGDAQAYKTIRSALVDKHCMQAVITMPSGVFQPYSG 372 Query: 350 VKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSF-GKRTPFTDEHLQPFERVYGED 408 V T ++ FTK TD VW YD+R + S +RTP +++ P + Sbjct: 373 VSTAIIIFTKTGTGG-------TDKVWFYDMRADGFSLTTQRTPQPEQNDIPDIISRFHN 425 Query: 409 PHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWL 468 + R+ E SF ++E + L+ R+ + RE I +++ Sbjct: 426 LEAETDRSRKEQSF------FVTADEIRANGYDLSYKRYHEVEREVIEYEAPETIIARME 479 Query: 469 KDKDSIDA 476 + + +IDA Sbjct: 480 ERQKAIDA 487 >UniRef50_C3XHF2 Type I restriction-modification system M subunit n=2 Tax=Campylobacterales RepID=C3XHF2_9HELI Length = 496 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 109/379 (28%), Positives = 176/379 (46%), Gaps = 50/379 (13%) Query: 50 LPEGYRWDDL----KSRIGQEQLQFYRKML------VHLGED---DKKLVQAVFHNVSTT 96 +PE RW+ KS G+ L F L +++ E ++ +V+ VF +++ Sbjct: 58 IPEHLRWESWAVGEKSPTGEPLLTFINNELFPTLKALNITESTPLNQSIVRKVFEDLNNY 117 Query: 97 ITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDM---YEGLLQKNANETKSGAGQYFTPR 153 + + + +++ ++S +R DF ++ YE L+ ++ AG+++TPR Sbjct: 118 MKDGYLLREVINEIES-----SLKIHNRQDFKELCKVYESFLK--TLQSAGNAGEFYTPR 170 Query: 154 PLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFI 213 + + ++ +L P+ E V D A GT GFLI A +++ Q N L + + F+ +F Sbjct: 171 AVTEFMVEMLSPKLGESVADLACGTGGFLISAAHFLEKQVN----LTSERKVFET--SFY 224 Query: 214 GLELVPGTRRLALMNCLLHDIEG-NLDHGGAIRLGNTLGSDGE--NLPKAHIVATNPPFG 270 G+E L N L++ IE NL HG A N D PK I+ NPP+G Sbjct: 225 GVEKKSLPFLLCATNLLINGIENPNLKHGNAFDFSNFEDFDINLTKYPKFDIILMNPPYG 284 Query: 271 SAAGTNITRTFV--HPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKG-TDIRRD 327 + + F + +S FM I+ L G+AAVV+PD LF +++R Sbjct: 285 GNERGDDIKNFPQEYKSSETVDLFMALILHRLSYKGKAAVVLPDGFLFGADNAKINLKRK 344 Query: 328 LMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMP- 385 L+ +L+ ILRLP +F + TN+LFF N D T Y R +MP Sbjct: 345 LLSDFNLYLILRLPKSVFAPYTSIPTNLLFF--------NADPQGTQHTHFY--RLDMPE 394 Query: 386 ---SFGKRTPFTDEHLQPF 401 SFGK + EH +PF Sbjct: 395 GIKSFGKTKQMSLEHFEPF 413 >UniRef50_Q5NWK9 Type I restriction-modification system (Specificity subunit) n=3 Tax=Betaproteobacteria RepID=Q5NWK9_AZOSE Length = 540 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 102/342 (29%), Positives = 158/342 (46%), Gaps = 48/342 (14%) Query: 54 YRWDDLKSRIGQEQL-QFYR-KMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMD 111 +RW + + E L +F R ++ E H I EP + +V+ +D Sbjct: 89 FRWSVWATALSGEPLVRFLRDEVFAFFTEMAGNGAVNFMHGARLVIDEPTVLNQVVTLVD 148 Query: 112 SLDWYNGAHGKSRDDFGDMYEGLLQ--KNANETKSGAGQYFTPRPLIKTIIHLLKPQPRE 169 L D GD++E +L+ K A E GQ+ TPR +I+ I+ ++ P+ E Sbjct: 149 GLHLDRA----DADTKGDLFEHVLRQIKQAGEL----GQFRTPRHIIRAIVEIIDPKIGE 200 Query: 170 VVQDPAAGTAGFLIEADRYV-----------------KSQTNDLDDLDGDTQDFQIH-RA 211 + DPAAGTAGFL+ A ++ K QT L D Q + + Sbjct: 201 TIYDPAAGTAGFLVAAYNHIRLANSSPAGIQSVELDGKMQTRGLGDKLSTAQLSALQSKT 260 Query: 212 FIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKA---------HI 262 F G ++ P RLA MN L + I L N L + +N KA H+ Sbjct: 261 FFGNDVDPKMVRLATMNLTLRGLPNV-----HILLRNVLTTTLDNERKADLCLPQEGYHV 315 Query: 263 VATNPPFGSAAGTN--ITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLF-EGG 319 V NPPF + + + T+ +L F+++++++L PGGR V+VP+ VLF G Sbjct: 316 VLANPPFSGRVDKDRIVDDVKIGTTTATELLFLKYMMDSLRPGGRCGVIVPEGVLFGSTG 375 Query: 320 KGTDIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKG 360 ++RR L++ + ++ LP G+F GVKT+VLFF KG Sbjct: 376 AHKELRRQLIENNRVEAVMSLPGGVFQPYSGVKTSVLFFRKG 417 >UniRef50_A2TPX2 Type I restriction modification system M subunit (Site-specific DNA-methyltransferase subunit) n=2 Tax=Flavobacteriaceae RepID=A2TPX2_9FLAO Length = 544 Score = 124 bits (311), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 112/392 (28%), Positives = 181/392 (46%), Gaps = 56/392 (14%) Query: 19 DGGVSYQ-NYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLKSRIGQEQLQFYRKMLVH 77 +GG+S V +L+ L+F+K E +E L + D +EQ QF K + Sbjct: 19 NGGISNTLQIVEQLSYLIFIKNLDEVETRSE-LKKQRTGVDFTPIFNEEQQQFRWKNIKE 77 Query: 78 LGEDDKKL-----VQAVF---------------HNVSTTITEPKQIT-ALVSNMDSLDWY 116 + + + + V +F H + + Q+ +++ +D LD Sbjct: 78 MDVNTRHMLFADTVSGIFPFLRNLGVETSAFAKHMRNASYGMKAQVLDSVIEQLDQLDM- 136 Query: 117 NGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAA 176 +D GD++E +L K E +GQ+ TPR +I+ ++ L++P + + DP+A Sbjct: 137 -----DEQDAKGDIFEYMLSKM--EGGGTSGQFRTPRHIIRLMVELMQPTLEDTICDPSA 189 Query: 177 GTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIH-RAFIGLELVPGTRRLALMNCLLHDIE 235 GTAGFL+ A Y+ + D ++ + I F G+E R+A MN LH +E Sbjct: 190 GTAGFLVGAKEYIDTH---YDVMEREAAKEHIDTMMFNGMEFDATMLRIASMNLFLHGVE 246 Query: 236 G-NLDHGGAIRLGNTLGSDGENLPKAHIVATNPPF-GSAAGTNITRTF--VHPTSNKQLC 291 N+ A+ N + +D L V NPPF G+ +I V TS +L Sbjct: 247 APNIIDVDAVSKDNDI-ADAYTL-----VLANPPFKGTIDKESIASDLKTVTSTSKTELL 300 Query: 292 FMQHIIETLHPGGRAAVVVPDNVLFEGGKG-TDIRRDLMDKCHLHTILRLPTGIF--YAQ 348 F+ ++ + GGRAAV+VPD VLF K IR +++ L ++ +P+G+F YA Sbjct: 301 FLALMLRQMKMGGRAAVIVPDGVLFGSSKAHKSIREEIVANHKLEAVISMPSGVFKPYA- 359 Query: 349 GVKTNVLFFTKGTVANPNQDKNCTDDVWVYDL 380 GV T ++ FTK TD VW YD+ Sbjct: 360 GVSTAIMIFTK-------TGSGGTDHVWFYDM 384 >UniRef50_A3RQ90 Type I restriction-modification system methylation subunit n=4 Tax=Ralstonia solanacearum RepID=A3RQ90_RALSO Length = 481 Score = 124 bits (311), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 93/300 (31%), Positives = 145/300 (48%), Gaps = 31/300 (10%) Query: 92 NVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFT 151 ++ T+ P + +V +D++ + RD G +Y+ LL + + G++ T Sbjct: 115 DIRFTMPTPALLAKVVQQLDAIPLHR------RDVRGAVYDALLGRIPLVGQ--GGRFHT 166 Query: 152 PRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRA 211 PR +++ ++ L +P P + + DPAAGT FL A Y++ + L L Q H Sbjct: 167 PRHIVRFMVELTRPDPSDTLCDPAAGTGSFLAAAGEYLRREHPGL--LHDARQSVHFHHG 224 Query: 212 -FIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAH-IVATNPPF 269 F G E+ R+ MN LLH +EG +R + L N A+ +V +PPF Sbjct: 225 MFHGYEIDRAMLRIGSMNLLLHGVEGP-----DLRDHDALAPTDANEAGAYSLVLAHPPF 279 Query: 270 -GSAAGTNITRTFVH--PTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKG-TDIR 325 G ++ +H T +L F+ + L PGGRAAV+VPD VLF G +R Sbjct: 280 TGDVDHGSVDPDLLHRVRTRKAELLFLARCLHLLKPGGRAAVIVPDGVLFGSGLAHRTLR 339 Query: 326 RDLMDKCHLHTILRLPTGIF--YAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTN 383 R L++ L +++LP G+F YA G+ T +L FT+ D T VW YDLR + Sbjct: 340 RMLVENHRLEGVIKLPAGVFRPYA-GIGTAILLFTR-------TDTGGTGHVWFYDLRAD 391 >UniRef50_C0QCH3 HsdM2 n=5 Tax=Bacteria RepID=C0QCH3_DESAH Length = 515 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 99/402 (24%), Positives = 176/402 (43%), Gaps = 62/402 (15%) Query: 10 LWKLCDNLRDGGVSYQNYVNELASLLFLKMCKET-GQEAEYLPEGYRWDDLKSRIGQEQL 68 LW D LR G + ++ N + LLFLK + +E E L E WD + + Sbjct: 12 LWGSADILR-GSIDSSDFKNYIFGLLFLKRANDVFDEENEKLVEKENWDIEAAASDPDYH 70 Query: 69 QFYRKMLVH---LGEDDKKLVQAVFHNVSTTITEPKQITALVS-----NMDSL------- 113 +F+ + E + + QA+ ++ E + +++ N D L Sbjct: 71 KFFIPDTARWQTIIEKTENIGQAIDEALAAIEEENLNLEGVMTAVHFGNKDVLSDALLQR 130 Query: 114 --DWYNGAHGKSRDDF-----GDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQ 166 + +N K++D + GD YE L++ A++ G+++TP+ +++ I+ L+KP+ Sbjct: 131 LLNHFNKYSLKNKDLYTPDLLGDAYEYLIKMFADDAGKKGGEFYTPKGVVRLIVQLIKPE 190 Query: 167 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLAL 226 P+ V DP G+ G L+E+ RY+ Q + +L + + G E GT + Sbjct: 191 PKNSVYDPTCGSGGMLVESARYIAEQGGKVGEL--------LDASLFGQEKNLGTWAICK 242 Query: 227 MNCLLHDI-EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPF---------------- 269 +N +LH+ + ++ G + SDGE + ++A NPPF Sbjct: 243 INMILHNYSDADIKKGCTLSTPKHSTSDGELMIFDRVIA-NPPFSQNKWWDAAEVDVKVN 301 Query: 270 --GSAAGTNITRTF----------VHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFE 317 G N ++ V P L F+QH+I L+ G+ +V+P VLF Sbjct: 302 GNGKEMAVNYSKAVSDPYGRFQYGVPPRGYADLAFLQHMISVLNQNGKLGIVLPHGVLFR 361 Query: 318 GGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTK 359 GG IR+ ++ L ++ LP+ +FY G+ ++L K Sbjct: 362 GGSEGKIRKGILKDDILEAVVGLPSKLFYNTGIPASILIVNK 403 >UniRef50_B7RYA8 N-6 DNA Methylase family protein n=2 Tax=Bacteria RepID=B7RYA8_9GAMM Length = 521 Score = 120 bits (302), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 101/322 (31%), Positives = 150/322 (46%), Gaps = 56/322 (17%) Query: 112 SLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVV 171 ++D N D GD+YE LL K T GQ+ TPR +I+ ++ ++ P+ + + Sbjct: 126 AIDMVNDLPLSQGDTKGDLYEYLLSKLT--TAGINGQFRTPRHIIRAMVDMMDPKATDRI 183 Query: 172 QDPAAGTAGFLIEADRYVKSQTNDLD--------DLDGDTQDFQI--------HR----- 210 DPA GTAGFL ++ + + D D +G+ Q+ I HR Sbjct: 184 CDPACGTAGFLSTTYEFMLEKYSSKDGTIREMVVDENGEEQEQVIYTGDLLADHREHVDR 243 Query: 211 -AFIGLELVPGTRRLALMNCLLHDI-EGNLDHGGAIRLGNTLGSDGENLPKAH-----IV 263 F G + R+A MN ++H + E ++ + + G E P++ +V Sbjct: 244 DMFHGFDFDATMLRIAAMNLVMHGVTEPDIHYQDTLSQGFI-----ERFPQSAREGFDLV 298 Query: 264 ATNPPFGSA-----AGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEG 318 NPPF + I RT T +L F+ I+ L GGRAAV+VPD VLF Sbjct: 299 LANPPFKGSLDEEDVDPEILRTV--KTKKTELLFIALILRMLKVGGRAAVIVPDGVLFGS 356 Query: 319 GKG-TDIRRDLMDKCHLHTILRLPTGIF--YAQGVKTNVLFFTKGTVANPNQDKNCTDDV 375 K +R+ +++ L I+ LP+G+F YA GV T V+ FTKG TD V Sbjct: 357 SKAHQQLRKSMIEDNQLEAIVSLPSGVFKPYA-GVSTAVMIFTKG---------GQTDRV 406 Query: 376 WVYDLRTNMPSF-GKRTPFTDE 396 W YDL+ + S KRTP + E Sbjct: 407 WFYDLQADGFSLDDKRTPLSGE 428 >UniRef50_D0LNE1 Type I restriction-modification system, M subunit n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LNE1_HALO1 Length = 633 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 120/476 (25%), Positives = 191/476 (40%), Gaps = 67/476 (14%) Query: 10 LWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQE------AEYLPEGYRWDD----- 58 LW D LR G + +Y N + LLFLK + +E AE LP W+D Sbjct: 147 LWAAADILR-GQIDSSDYKNYIFGLLFLKRLSDVFEEEAEKLTAEGLPAAVAWNDPDEHQ 205 Query: 59 --------------LKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHN----VSTTITEP 100 + + IG E L L +++ + N + T Sbjct: 206 FFVPERARWSEIAKVATGIG-EALNVACAALEEANSGLDGVLEGIDFNDERRLGNTKNRD 264 Query: 101 KQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTII 160 + LV + L N A D G YE L++K A++ G+++TPR +++ I+ Sbjct: 265 AVLARLVQHFGQLSLKN-ADLSEPDMLGRAYEYLIEKFADDAGKKGGEFYTPRKVVQLIV 323 Query: 161 HLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPG 220 LL P + DP G+ G LIE YV+ Q G+ ++ +H G E G Sbjct: 324 ELLAPTAGMRISDPTCGSGGMLIECAHYVERQ-------GGNPRNLTLH----GQEKNLG 372 Query: 221 TRRLALMNCLLHDI-EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPF---------G 270 T + MN LLH + ++ G IR L +G L ++A NPPF Sbjct: 373 TWAICKMNMLLHGLPSARIEKGDTIRDPRLL-DNGALLVYDRVIA-NPPFSLDEWGVEVA 430 Query: 271 SAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMD 330 G R + P + L F+QH++ TL+ GGR VV+P VLF G IR L+ Sbjct: 431 EGDGHGRFRFGLPPKTKGDLAFLQHMVATLNEGGRLGVVMPHGVLFRGSSEGRIRSKLLA 490 Query: 331 KCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKR 390 + ++ L +FY G+ VL ++ ++ + V D + + + Sbjct: 491 EDLFEAVIGLAPNLFYGTGIPAAVLVLSR------DKARARKGKVLFVDASSEFEAGSAQ 544 Query: 391 TPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSR 446 D H+ R + E R ++ E+ +E N N +++ TS+ Sbjct: 545 NYLRDVHVTKIARAFHE------YRDVERFARVVPLAEIEQNEGNLNISRYVDTSQ 594 >UniRef50_A4AK44 Type I restriction-modification system methylation subunit n=2 Tax=Actinobacteria (class) RepID=A4AK44_9ACTN Length = 507 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 108/405 (26%), Positives = 178/405 (43%), Gaps = 63/405 (15%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQ--------------- 45 + L + LW + LR G V ++ + + ++F K ++ Sbjct: 11 LTQRQLESALWSAANALR-GPVDAGDFKSFVFPVMFFKWISDSWDFQHRQAVSDFGDALT 69 Query: 46 ---EAEY----LPEGYRWDDL-------KSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFH 91 EA+Y +P+ W+D+ S++G K L+ + E + + VF Sbjct: 70 PEIEADYHPFLIPDECHWNDVYDVTVNTGSKLG--------KTLLRIQEANPGKLDGVFG 121 Query: 92 NVSTTITEPKQITALVSNMDSLDWYN-GAHGKSRDDFGDMYEGLLQKNANETKSGAGQYF 150 +V+ + T+ +AL +D+ D + S D G YE LL++ A + AG++F Sbjct: 122 DVNWSNTDRLPESALTKLLDAFDKLTLDPNNASGDMLGAGYEYLLREFAEASGKKAGEFF 181 Query: 151 TPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHR 210 TPR ++ ++ LL+PQ + V DPA G+AG L+E N +D GD++ ++ Sbjct: 182 TPRHVVHLLVKLLQPQSGDSVCDPACGSAGMLVET-------VNAVDASGGDSRTLTLY- 233 Query: 211 AFIGLELVPGTRRLALMNCLLHDIEG-NLDHGGAIRLGNTLGSDGENLPKAHIVATNPPF 269 G E T +A MN LH E + G R L G+ L K +V NPPF Sbjct: 234 ---GQEFNLTTAAMARMNLYLHGQESFQIMRGDTFREPKLLDEAGQ-LRKFDVVIANPPF 289 Query: 270 G-------SAAGTNITRTF---VHPTSNKQLCFMQHIIETLH-PGGRAAVVVPDNVLFEG 318 A R V P +N ++QH++ T+ GRA +++P LF G Sbjct: 290 SLRNWGADMWARDPYKRAIGGEVPPPANGDWAWIQHMVSTIKDDTGRAGIIMPHGALFRG 349 Query: 319 GKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVA 363 GK IR + L ++ LPT +FY+ ++ +L F K +A Sbjct: 350 GKEAAIREHFVRTGLLEAVIGLPTNLFYSTSIQVCILIFRKNKLA 394 >UniRef50_C9KRW3 Type I restriction-modification system, M subunit n=9 Tax=Bacteroidales RepID=C9KRW3_9BACE Length = 497 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 105/394 (26%), Positives = 183/394 (46%), Gaps = 58/394 (14%) Query: 5 DLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKE------------TGQEAEY--- 49 DL L++ C+ +R G VS N+ + + LL+ K + +G + EY Sbjct: 15 DLYNFLFEACNIIR-GPVSQDNFKDYITPLLYYKRISDVYDEETEEALISSGGDKEYASL 73 Query: 50 -------LPEGYRWDDLKSR---IGQEQLQFYRKMLVHLGEDDKKLVQAVFHN---VSTT 96 +P+G W +++ R +G + R++ + D V ++F + + Sbjct: 74 PEQHRFVIPDGCHWQEVRERTENLGAAIVGAMRQIEIA-NPDTLYGVLSMFSSQKWTNKA 132 Query: 97 ITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLI 156 I +I L+ ++ N + D GD YE LL+K A+++K+ AG+++TPR ++ Sbjct: 133 ILNDSKIRDLIEHLSKRKLGNKDY--PADLMGDAYEILLKKFADDSKAQAGEFYTPRSVV 190 Query: 157 KTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLE 216 + ++H+L PQP E V DPA G+ G LIEA RY+ + + G Q+ + A I Sbjct: 191 RLLVHILDPQPGETVYDPACGSGGMLIEAIRYMHDDSLCCGSIFG--QEKNVVNAAI--- 245 Query: 217 LVPGTRRLALMNCLLHDI-EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPF------ 269 A MN LH + N+ G +R L G N+ K V NPPF Sbjct: 246 --------AKMNLFLHGASDFNVMQGDTLRDPKIL--QGGNIAKFDCVIANPPFSLENWG 295 Query: 270 GSAAGTNITRTFVHPT---SNKQLCFMQHIIETLHPG-GRAAVVVPDNVLFEGGKGTDIR 325 + ++ + ++ T S ++QH+I ++ G GR AVV+P +LF G + +IR Sbjct: 296 ATEWSSDKYKRNIYGTPSDSCGDYAWIQHMICSMSSGKGRMAVVMPQGILFRGNQEAEIR 355 Query: 326 RDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTK 359 + L++ + ++ L +FY G+ L + Sbjct: 356 KQLVESNLIEAVVTLGDKLFYGTGLSPCFLIIRR 389 >UniRef50_B2HKY8 Type I restriction/modification system DNA methylase HsdM n=1 Tax=Mycobacterium marinum M RepID=B2HKY8_MYCMM Length = 484 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 95/376 (25%), Positives = 163/376 (43%), Gaps = 45/376 (11%) Query: 10 LWKLCDNLRDGGVSYQNYVNELASLLFLKMCKET--GQEAEYLPEGYRWDDLKSRIGQEQ 67 LWK + LR G + Y + + L+FLK + G++ +P RW+ L Sbjct: 13 LWKGAEKLR-GSIPASQYKDVILGLVFLKFVSDARDGRKPFVVPPEARWEALAGNAKSPD 71 Query: 68 L-QFYRKMLVHLGEDDKKLVQAV---FHNVSTTITEPKQITALVSNMDSLDWYNGAHGKS 123 + Q ++ + + L + +H V + +++ LV + + + ++ Sbjct: 72 IGQLIDTAMLSVMTANPSLAATLPQLYHKV-----DQRRLGELVEVLGAARFSGRPSHRA 126 Query: 124 RDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLI 183 RD G++YE L A G++FTP +++ I+ +L+P + DP G+ G + Sbjct: 127 RDLMGEVYEYFLGNFARAEGRRGGEFFTPPSVVRVIVEILEPSSGRIY-DPCCGSGGMFV 185 Query: 184 EADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA 243 + +R++ + DGD I+ G E V T R+A MN +H I+ D G Sbjct: 186 QTERFICAH-------DGDPAQISIY----GQESVEQTWRMAKMNLAVHGID---DAGLG 231 Query: 244 IRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNIT-----------RTFVHPTSNKQLCF 292 R G+T +D + V NPPF NI R P +N + Sbjct: 232 ARWGDTFATDQHDGVPMDYVMANPPF------NIKDWARDEQDPRWRFGTPPAANANFAW 285 Query: 293 MQHIIETLHPGGRAAVVVPDNVLFEGGKGTD-IRRDLMDKCHLHTILRLPTGIFYAQGVK 351 +QHI+ L P G+A VV+ + + G D IR ++D + ++ LPT +F + G+ Sbjct: 286 IQHILSKLAPTGQAGVVMANGSMSSKTNGEDRIRAGIIDADLVSCMVALPTQLFRSTGIP 345 Query: 352 TNVLFFTKGTVANPNQ 367 + FF K A Q Sbjct: 346 VCLWFFAKDKKARSGQ 361 >UniRef50_B3EKI4 N-6 DNA methylase n=1 Tax=Chlorobium phaeobacteroides BS1 RepID=B3EKI4_CHLPB Length = 775 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 88/319 (27%), Positives = 159/319 (49%), Gaps = 27/319 (8%) Query: 52 EGYRWDDLK-SRIG-QEQLQFYRKMLVHLGEDDK--KLVQAVFHNVSTTITEPKQITALV 107 E Y W L RIG QE++ Y + L+ + + +L + +F + P+ + + Sbjct: 61 ENYAWTRLMDQRIGNQERMNLYSEALIKFSQAKQLPELFRGIFKSAFLPYRSPETLGLFL 120 Query: 108 SNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQP 167 +D D+ +H ++ G+ YE LL + ++ AGQ+ TPR +I I+ ++ P Sbjct: 121 KEIDYFDY---SH---PEELGNAYEYLL--SIMSSQGDAGQFRTPRHIIDFIVDVVNPTK 172 Query: 168 REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDF------QIHRAFIGLELVPGT 221 + V DPA GT GFL+ + +++ Q + DD + ++ F G ++ P Sbjct: 173 ADKVLDPACGTGGFLVSSYKHILEQHDGKDDPKKKEKPLTPDERKKLMTNFEGYDIDPTM 232 Query: 222 RRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSA-AGTNITRT 280 R+A +N LH + I ++L S+ K ++ NPPF S G Sbjct: 233 VRIAQVNMYLHQFKN-----PKIFQYDSLSSEERWNDKFDVILANPPFMSPKGGIKPHSK 287 Query: 281 FVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKG-TDIRRDLMDKCHLHTILR 339 F P+S ++ F+ +I+ L P GRA ++VP+ ++F+ G +R++L++ L+ ++ Sbjct: 288 FSIPSSRSEVLFVDYIMNHLRPKGRAGIIVPEGIIFQSGTAHKQLRKNLVEDG-LYAVVS 346 Query: 340 LPTGIFYA-QGVKTNVLFF 357 LP+G+F GVKT++L F Sbjct: 347 LPSGVFAPYSGVKTSILLF 365 >UniRef50_B3EE94 N-6 DNA methylase n=3 Tax=Bacteria RepID=B3EE94_CHLL2 Length = 846 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 91/314 (28%), Positives = 146/314 (46%), Gaps = 21/314 (6%) Query: 54 YRWDDLKSRI--GQEQLQFYRKMLVHLGEDD--KKLVQAVFHNVSTTITEPKQITALVSN 109 Y W R G E L Y + + + E+ L + +F N +P+ + A + Sbjct: 64 YGWAKFMDRSLGGHEMLGLYSEGIAKMPENPGIPALFRDIFKNAYLPYRDPETLKAFLKI 123 Query: 110 MDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPRE 169 +D + + GD +E LL + ++ AGQ+ TPR +I ++ +L PQ E Sbjct: 124 IDEFTY------DHSERLGDAFEYLL--SVLGSQGDAGQFRTPRHIIDFMVEILVPQKNE 175 Query: 170 VVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQD--FQIHRAFIGLELVPGTRRLALM 227 + DPA GTAGFLI A +++ D D T D ++ R F G ++ P RL+L+ Sbjct: 176 TILDPACGTAGFLISAYKHILRTNTDTDGHSTLTPDEKGRLARNFKGYDISPDMVRLSLV 235 Query: 228 NCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSA-AGTNITRTFVHPTS 286 N LH G D I +TL S+ A ++ NPPF S G + F Sbjct: 236 NLYLH---GFTDP--HIFEYDTLSSEERWNEFADVILANPPFMSPKGGIKPHKRFSIQAK 290 Query: 287 NKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFY 346 ++ F+ ++ E L P GRA ++VP+ ++F+ R ++ + L ++ LP G F Sbjct: 291 RSEVLFVDYMAEHLTPAGRAGIIVPEGIIFQSQMAYKELRKMLVENSLVAVISLPAGCFN 350 Query: 347 A-QGVKTNVLFFTK 359 GVKT++L K Sbjct: 351 PYSGVKTSILILDK 364 >UniRef50_Q73QS4 Type I restriction-modification system, M subunit n=1 Tax=Treponema denticola RepID=Q73QS4_TREDE Length = 871 Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 98/390 (25%), Positives = 167/390 (42%), Gaps = 54/390 (13%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEY----LPEGYRW 56 + ++L LW CD+LR GG+ Y + + +LLF+K + ++ Y +PEG + Sbjct: 3 VRKSELYGSLWASCDSLR-GGMDSSQYKDYILTLLFVKYVSDKYKDMPYGEIEIPEGGSF 61 Query: 57 DDLKSRIGQEQL-QFYRKMLVHLGE--DDKKLVQAVFHNVSTTITEPKQ----ITALVSN 109 DD+ + G++ + + K++ L E D + ++ + N T ++ +T L+S Sbjct: 62 DDMLALRGKKGIGEGIDKVIAKLAEANDLRGIIDNAYFNDPTKFGSGQEMVDKLTELLSI 121 Query: 110 M-DSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQP- 167 D + + + D GD YE L++ A E+ GQ++TP + + + H++ + Sbjct: 122 FCDKMPNFGKNRAEGDDIIGDAYEYLMKNFATESGKSKGQFYTPAEVSRILAHVIGIEKA 181 Query: 168 ---REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRL 224 + DPA G+ LI A A G E T L Sbjct: 182 KSGESTLYDPACGSGSLLIRAAETAPPNV-----------------AVFGQEKDITTAGL 224 Query: 225 ALMNCLLHDIEGNLDHGGAIRLGNTLGS-------DGENLPKAHIVATNPPFGSAAGTNI 277 A MN +LH++ I+ GNT D L + NPPF T+ Sbjct: 225 AKMNLVLHNVAT-----AEIKSGNTFSEPKYKKHDDETALRQFDFAVVNPPFSDKNWTHG 279 Query: 278 TRTFVH--------PTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLM 329 + F P N ++ H+I++L G+AAV++P VLF G IR+ L+ Sbjct: 280 LQDFGRFDGYEERPPEKNGDFAWLLHVIKSLKRNGKAAVILPHGVLFRGNAEASIRKALI 339 Query: 330 DKCHLHTILRLPTGIFYAQGVKTNVLFFTK 359 K + I+ LP +FY G+ ++ K Sbjct: 340 KKGFIKGIIGLPPNLFYGTGIPACIIVIDK 369 >UniRef50_A9FYU4 Probable type I restriction-modification system,M subunit n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FYU4_SORC5 Length = 360 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 70/163 (42%), Positives = 83/163 (50%), Gaps = 40/163 (24%) Query: 262 IVATNPPFGSAAG---------------TNITRTFVHPTSNKQLCFMQHIIETLHPGGRA 306 +V TNPPFG + T + F TSNKQL F+QH+ L GRA Sbjct: 54 MVLTNPPFGKKSSVMVLTQEGDESREALTVMREDFWATTSNKQLNFVQHVKTILAIHGRA 113 Query: 307 AVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTK------- 359 AVVVPDNVLFEGG G IRR L+ C +HT+LRLPTGIFYAQGVK NVLFF K Sbjct: 114 AVVVPDNVLFEGGAGETIRRKLLHDCDVHTLLRLPTGIFYAQGVKANVLFFDKKPASEKP 173 Query: 360 ------------------GTVANPNQDKNCTDDVWVYDLRTNM 384 VA ++ + C W + LRT + Sbjct: 174 WTRKLCSLCDRSRPLSYPAAVAVLHRQRECAWGAWRHGLRTGL 216 >UniRef50_B0V9R4 Putative uncharacterized protein n=2 Tax=Acinetobacter baumannii RepID=B0V9R4_ACIBY Length = 760 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 119/427 (27%), Positives = 195/427 (45%), Gaps = 69/427 (16%) Query: 5 DLVAKLWKLCDNLRDGGV-SYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLKSRI 63 +L+ KL ++LR G+ + ++E A++LFLK+ E W+ LKS Sbjct: 162 ELINVFKKLNNSLRGEGLRAGIERLSEFANILFLKLYTENANTG-------IWNSLKSLD 214 Query: 64 GQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKS 123 + +L + D++ +VF N+ +T P + ++ +D L Sbjct: 215 NDLLINTTNNILQDI---DRQYGASVFTNLQ--LTNPVAVKEMIKELDKLKL----SSID 265 Query: 124 RDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLI 183 D GD +E LQ+ A T + G+YFTPR + KTI++L+ P+ E + DP GT GFL Sbjct: 266 TDIKGDAFEYFLQQ-ATATNNDLGEYFTPRHITKTIVNLVNPKYGEKIYDPFCGTGGFLT 324 Query: 184 EADRYVKSQTNDLDDLDGDTQDFQI---HRAFIGLELVPGTRRLALMNCLLHDIEGNLDH 240 EA ++K T L + +I H G E+ +LA MN +LH +G H Sbjct: 325 EAFDHIKDNT-----LIANNSSEEIKLKHNTIFGREITSNA-KLAKMNMILHG-DG---H 374 Query: 241 GGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQ-------LCFM 293 G ++ +TL + E+ + +V TN PF ++ H NK +C + Sbjct: 375 SGICQI-DTLQNPIES--EYDVVITNMPFSQKT------SYSHLYENKLAKNDGDGVCVL 425 Query: 294 QHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIF--YAQGVK 351 H + GGR A+VVP+ LF+ +R+ L + L ++ LP +F YA+ VK Sbjct: 426 -HCFKATKKGGRMALVVPEGFLFKAALAP-VRKYLFENAQLKAVVSLPKEVFLPYAK-VK 482 Query: 352 TNVLFFTKGTVANPNQDKNCTDDVWVYDLRTN---MPSFGKRT--------PFTDEHLQP 400 TN+L+FT N DV+ Y++ + + SF ++ F D + Sbjct: 483 TNILYFTNCHNGRTNS------DVFYYNVTNDGLSLDSFRRKIDENDLKNLDFADLNKSD 536 Query: 401 FERVYGE 407 F++ Y E Sbjct: 537 FDKYYNE 543 >UniRef50_B9XME0 N-6 DNA methylase n=1 Tax=bacterium Ellin514 RepID=B9XME0_9BACT Length = 811 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 92/322 (28%), Positives = 156/322 (48%), Gaps = 26/322 (8%) Query: 85 LVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKS 144 L + +F N +P+ + A + +D + + + GD +E LL + ++ Sbjct: 99 LFREIFKNAYLPYRDPETLKAFLKIIDEFTYDHS------ERLGDAFEYLL--SVLGSQG 150 Query: 145 GAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQ 204 AGQ+ TPR +I I+ ++ P+ E V DPA GTAGFLI + +++ D T Sbjct: 151 DAGQFRTPRHIIDFIVSVVDPKKNETVLDPACGTAGFLISSYKHILRANTDARGNSKLTP 210 Query: 205 D--FQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHI 262 D ++ + F G ++ P RL+L+N LH G D I +TL S+ A + Sbjct: 211 DDRGRLAKNFKGYDISPDMVRLSLVNLYLH---GFTD--PHIYEYDTLTSEERWNEFADV 265 Query: 263 VATNPPFGSA-AGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKG 321 + NPPF S G + F P++ ++ F+ +++E L GRA ++VP+ ++F+ G Sbjct: 266 ILANPPFMSPKGGIKPHKRFSVPSNRSEVLFVDYMLEHLTAHGRAGIIVPEGIIFQSGTA 325 Query: 322 TDIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTV-ANPNQDKNCTDDVWVYD 379 R+++ K L I+ LP+G+F GVKT++L K + P+ V D Sbjct: 326 YRRLREVLLKESLIGIISLPSGVFQPYSGVKTSILILDKRVAKSRPH--------VLFSD 377 Query: 380 LRTNMPSFGKRTPFTDEHLQPF 401 +R S G + T+ + PF Sbjct: 378 IRAIGVSLGVKRTVTERNDLPF 399 >UniRef50_C6BT25 N-6 DNA methylase n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BT25_DESAD Length = 856 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 101/409 (24%), Positives = 179/409 (43%), Gaps = 65/409 (15%) Query: 6 LVAKLWKLCDNLRDGGVSYQNYVNELASLLFLK--------------------------- 38 L KL+K CD LR G + Y + +LFLK Sbjct: 10 LERKLFKACDILR-GNMEASEYKEYIFGMLFLKRLSDQFHKDRAILAQDLAAKGIPEEAK 68 Query: 39 --MCKETGQEAEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTT 96 + + Q Y+PE RW+ ++ I ++ K L + E + + +Q V +++ Sbjct: 69 AALLDKRNQYTFYVPESARWEQIQ-HIKKDVGSGLNKALAAIEEANPETLQDVLKSINFN 127 Query: 97 ITEPKQITALVSNMDSLDWYNGAHGKSRDDF------GDMYEGLLQKNANETKSGAGQYF 150 ++ + ++ + +N S DDF G YE L++ A+ G+++ Sbjct: 128 RKVGQRTLDDSTLVEFIQHFNDI-PLSNDDFEFPDLLGAAYEFLIKHFADSAGKKGGEFY 186 Query: 151 TPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHR 210 TP +++T++ +++PQ + DP AG+ G LI++ +YV+ ++ +L Sbjct: 187 TPTEVVRTLVEIIEPQEGMGIYDPTAGSGGMLIQSAKYVQECGGNVKNL----------- 235 Query: 211 AFIGLELVPGTRRLALMNCLLHDI-EGNLDHGGAIRLGNTLGSDGENLPKAHIVAT---- 265 + G EL T + MN +LH I ++ ++ L D + + H + T Sbjct: 236 SLAGQELAGSTWSMCKMNMILHGIVSQDIRQEDVLKRPLHLKKDPDQNNQNHELKTWDRV 295 Query: 266 --NPPFGSAAGTNITRTFVH------PTSNKQ--LCFMQHIIETLHPGGRAAVVVPDNVL 315 NPPF S + F PT+ K+ L F+QH++ L G+ AV++P VL Sbjct: 296 IANPPF-SQNYSKKEMLFKDRFDVWLPTTGKKADLMFVQHMVAVLKNNGKCAVIMPHGVL 354 Query: 316 FEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVAN 364 F GG+ + R ++K L I+ LP+G+FY G+ +L K A+ Sbjct: 355 FRGGEERNCREKFIEKGILEAIVGLPSGLFYGTGIPACILVLNKEGAAD 403 >UniRef50_B3QZM0 Type I restriction-modification system methyltransferase subunit n=1 Tax=Candidatus Phytoplasma mali AT RepID=B3QZM0_PHYMT Length = 925 Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 99/392 (25%), Positives = 184/392 (46%), Gaps = 52/392 (13%) Query: 5 DLVAKLWKLCDNLRDGGVSY-QNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLKSRI 63 +L++ K+ + L++ G+S +NE ++LFLK+ E Q + + E Y W++ K+ Sbjct: 144 NLISIFKKINNLLQEVGISAGIQRINEFCNILFLKLFSE--QNIKNINELYLWENFKNTP 201 Query: 64 GQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEP---KQITALVSNMDSLDWYNGAH 120 L+F++K ++ E KK VF + T I ++I L+ + +D Sbjct: 202 DNSLLEFFKKNII--PEFQKKYSSDVF--IQTEIKNSSVLRKIIQLLDPLKLIDLETDIK 257 Query: 121 GKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAG 180 G + + F +Y G + K+ G+YFTPR ++K + ++ P+ E + DP GT G Sbjct: 258 GDAFEYFISVYSG-----GHGQKTDLGEYFTPRHIVKNTVKIVNPKIGETILDPFCGTGG 312 Query: 181 FLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLH-DIEGNLD 239 FLIE +++ Q LD T ++ + I + + T RLA MN +L D N+ Sbjct: 313 FLIEVFKHIHQQI----SLDDKTLLKKLQKETIFGQEITSTSRLAKMNMILAGDGHNNII 368 Query: 240 HGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIET 299 ++++ N D ++ TN PFG+ K+ +++ + Sbjct: 369 QCDSLKVTNKQKYD--------LIITNIPFGNQ---------------KEQLYIETCLNF 405 Query: 300 LHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFT 358 L GGR A+++PD +L K +R+ L + + I+ +P G+F VKT++L Sbjct: 406 LKKGGRMAIIIPDGIL-SNQKNLFLRKKLYNNFDIK-IISMPMGMFEPYTSVKTSIL--- 460 Query: 359 KGTVANPNQDKNCTDDVWVYDLRTNMPSFGKR 390 +AN ++ + +Y + ++ S K+ Sbjct: 461 ---IANSKKENQTNSFIKIYKIESDGFSLDKK 489 >UniRef50_A0KWT9 N-6 DNA methylase n=5 Tax=Bacteria RepID=A0KWT9_SHESA Length = 513 Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 104/385 (27%), Positives = 172/385 (44%), Gaps = 75/385 (19%) Query: 97 ITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLI 156 I +P + + V +D L + D GD+YE LL K T GQ+ TPR +I Sbjct: 116 IQKPTLMESAVEMIDKLPL------EDSDTKGDLYEYLLSKLT--TAGINGQFRTPRHII 167 Query: 157 KTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDL--------DGDTQDFQI 208 + ++ +L P + + DP+ GTAGFL A Y+ + + + +G+ Q +I Sbjct: 168 RAMVEMLDPTVEDRIVDPSCGTAGFLTVAYEYLLEKYTSPEGVHTETVVGDNGEAQQVKI 227 Query: 209 --------HRAFIGLELVPG------TRRLALMNCLLHDI-EGNLDHGGAIRLGNTLGSD 253 HR ++ ++ G R+A MN ++H + E ++ + + GS Sbjct: 228 YSGDLLVEHRDYVNTDMFHGFDFDATMLRIAAMNLVMHGVTEPDVHYQDTLS-----GSF 282 Query: 254 GENLPKAH-----IVATNPPF-GSAAGTNITRTFVHPTSNK--QLCFMQHIIETLHPGGR 305 E P + NPPF GS ++ + K +L F+ I+ L GG+ Sbjct: 283 TERFPNQSKDAYTLCIANPPFKGSLDEEDVDPAILRMVKTKKTELLFVAQILRLLKNGGK 342 Query: 306 AAVVVPDNVLFEGGKG-TDIRRDLMDKCHLHTILRLPTGIF--YAQGVKTNVLFFTKGTV 362 A++VPD VLF +R+ +++ L ++ LP+G+F YA GV T +LF TKG+ Sbjct: 343 TAIIVPDGVLFGSSNAHQQLRQHIIENNELQAVVSLPSGVFKPYA-GVSTAILFITKGS- 400 Query: 363 ANPNQDKNCTDDVWVYDLRTNMPSF-GKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWS 421 TD VW YD++ + S KRTP D L P ++ Sbjct: 401 --------RTDHVWFYDVQADGMSLDDKRTPIKDNDL----------PDLVA-------K 435 Query: 422 FNAEETEVADSEENKNTDQHLATSR 446 F A + +A++E+N + + S+ Sbjct: 436 FKARDKAIAETEQNDRSQKAFWVSK 460 >UniRef50_Q4KCG2 Type I restriction-modification system, M subunit n=1 Tax=Pseudomonas fluorescens Pf-5 RepID=Q4KCG2_PSEF5 Length = 580 Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 87/304 (28%), Positives = 150/304 (49%), Gaps = 27/304 (8%) Query: 98 TEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIK 157 ++ + +T LV +D L Y G + G+++E L + + T S G T R + + Sbjct: 130 SKSQALTGLVHAIDELFPYPGQKRQEGFSPGEVFEYLFTQGS--TSSNIGPLVTARHITR 187 Query: 158 TIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIH--RAFIGL 215 ++ LL P P + + DPAAGT GF++ A +Y+ S+ L QIH + +G+ Sbjct: 188 FMVALLAPLPGQRIIDPAAGTGGFMVSAQQYMLSRHARL----SAATKKQIHNGHSLVGI 243 Query: 216 ELVPGTRRLALMNCLLHDIEG-NLDHGGAIRLGNTLGSDGENLPKAH-IVATNPPFGS-- 271 +L R+ +N LLHDIE G ++ G++ G+ G L +++ V ++ PFG Sbjct: 244 DLSHTLARIGWVNLLLHDIESPQCMQGNSLVTGDSQGAAGRWLKESYDFVLSDLPFGGRI 303 Query: 272 ----AAGTNITRTFV-----HPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKG- 321 AAG N + + + +L F+ + L GG AA+++P N+L + Sbjct: 304 DPQEAAGANYLPFYARDDQGNRSDKVELLFVWRALNLLQVGGSAALIIPQNLLVGRSQAQ 363 Query: 322 TDIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGT----VANPNQDKNCTDDVW 376 D+RR+L+ + + ++ LP IF G+K +L K T +A+P+ TD VW Sbjct: 364 IDLRRELLSRHSVEAVILLPGAIFNPYTGIKAAILVVRKVTDHQALASPHVAPPQTDAVW 423 Query: 377 VYDL 380 Y++ Sbjct: 424 FYEV 427 >UniRef50_A6WNE4 Type I restriction-modification system, M subunit n=1 Tax=Shewanella baltica OS185 RepID=A6WNE4_SHEB8 Length = 847 Score = 115 bits (288), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 100/389 (25%), Positives = 169/389 (43%), Gaps = 54/389 (13%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEY----LPEGYRW 56 + N+L + LW CD LR GG+ Y + + +LLF+K + + Y +P+G + Sbjct: 3 IKKNELYSSLWASCDELR-GGMDASQYKDYVLTLLFMKYVSDKYKGDPYGMIVVPKGASF 61 Query: 57 DDLKSRIGQEQL-QFYRKMLVHLGEDD--KKLVQAVFHNVSTTITEPKQ----ITALVSN 109 DD+ + +++ K++ L E++ K ++ N + + K+ +T LV Sbjct: 62 DDMIAAKNDKEIGDKLNKIIGSLAEENDLKGVIDVADFNDEDKLGKGKEMVDRLTKLVGI 121 Query: 110 MDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQ--- 166 LD G D GD YE L++ A E+ GQ++TP + + + ++ Q Sbjct: 122 FQGLD-LTGNRADGDDLLGDAYEYLMRHFATESGKSKGQFYTPSEVSQILAKVVGIQNNT 180 Query: 167 PREV-VQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLA 225 P++ V DP G+ L++A + + + G E+ T LA Sbjct: 181 PQDATVYDPTCGSGSLLLKA-----------------SNEAPRGLSIFGQEMDNATSALA 223 Query: 226 LMNCLLHDIEGNLDHGGAIRLGNTLG----SDGEN-LPKAHIVATNPPFGSAAGTNITRT 280 MN +LH+ + I GNTL DG N L NPPF + T+ Sbjct: 224 RMNMILHN-----NATAKIWKGNTLADPQWKDGANKLKTFDFAVANPPFSNKNWTSGLNP 278 Query: 281 F----------VHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMD 330 P N F+ HII +L G+ AV++P VLF G +IR++L+ Sbjct: 279 LNDPYGRFTWGTPPEKNGDYTFLLHIITSLKSTGKGAVILPHGVLFRGNAEANIRQNLIK 338 Query: 331 KCHLHTILRLPTGIFYAQGVKTNVLFFTK 359 + ++ I+ LP +FY G+ ++ K Sbjct: 339 QGYIKGIIGLPANLFYGTGIPACIIVIDK 367 >UniRef50_C6P389 N-6 DNA methylase n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P389_9PROT Length = 815 Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 87/305 (28%), Positives = 150/305 (49%), Gaps = 25/305 (8%) Query: 64 GQEQLQFYRKMLVHLGEDD--KKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHG 121 G + L Y + + + E+ L + +F N +P+ + + ++++ H Sbjct: 76 GFDVLALYSEAIGKMNENPGIPTLFRDIFKNAYLPYRDPETLRIF---LKEINYFTYDHS 132 Query: 122 KSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGF 181 + GD +E LL + ++ AGQ+ TPR +I ++ ++ PQ E + DPA GTAGF Sbjct: 133 ---EKLGDAFEYLL--SVLGSQGDAGQFRTPRHIIDFMVEIVDPQKGERILDPACGTAGF 187 Query: 182 LIEADRYVKSQTNDLDDLDGDTQDFQIHRAFI-----GLELVPGTRRLALMNCLLHDIEG 236 LI A +++ + D T + RA+I G ++ P RL+L+N LH G Sbjct: 188 LISAWKHILKHNTKKNLGDQLTPE---QRAYIAANVHGYDISPDMVRLSLVNLYLH---G 241 Query: 237 NLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSA-AGTNITRTFVHPTSNKQLCFMQH 295 D + +TL S+ + A ++ NPPF S G + F + ++ F+ + Sbjct: 242 FTDP--HVVEYDTLTSEEKWNETADVILANPPFMSPKGGIKPHKRFSVQATRSEVLFVDY 299 Query: 296 IIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNV 354 I E L P GRAA++VP+ ++F+ G R ++ K L ++ LP+G+F GVKT++ Sbjct: 300 IAEHLSPNGRAAIIVPEGIIFQSGSAYKQLRQMLVKNSLVAVISLPSGVFNPYSGVKTSI 359 Query: 355 LFFTK 359 L K Sbjct: 360 LLLDK 364 >UniRef50_C7QWT4 Type III restriction protein res subunit n=1 Tax=Cyanothece sp. PCC 8802 RepID=C7QWT4_CYAP0 Length = 1005 Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 91/304 (29%), Positives = 143/304 (47%), Gaps = 38/304 (12%) Query: 113 LDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQ 172 LD + +++D GD+YE LL K ++G Q+ TPR +I+ ++ ++ P+P E + Sbjct: 564 LDNQESSDEQNQDVKGDLYEYLLGKLNISGRNG--QFRTPRHIIRLMVEMVDPKPNERIG 621 Query: 173 DPAAGTAGFLIEADRYVKSQTND----LDD----------LDGDTQDFQIHRAFIGLELV 218 D AAGT GFL+ + +Y+ + LD+ L + +F AF + Sbjct: 622 DLAAGTCGFLVNSYQYILEKFTSPEILLDEMGNKHPIGDLLTPEESEFLEKEAFTAYDND 681 Query: 219 PGTR--RLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPF-GSAAGT 275 G R+ MN +LH I+ +TL + ++ + NPPF G Sbjct: 682 SGMTMLRIGSMNLMLHGIK-----YPRFFYQDTLSKEFKDEKSLDVALMNPPFKGKMDEK 736 Query: 276 NITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKG-TDIRRDLMDKCHL 334 +I +L F+ I+ L GGR V+VPD VLF K DIR+ L+++ L Sbjct: 737 DINPYLPTKCKKTELLFLYQILRVLEMGGRCGVIVPDGVLFGSSKQHQDIRQKLIEENRL 796 Query: 335 HTILRLPTGIF--YAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSF-GKRT 391 ++ +P+G+F YA GV T +L FTKG TD +W YD+ + S KR Sbjct: 797 DGVVSMPSGVFKPYA-GVSTAILLFTKGAT---------TDRIWFYDMEHDGFSLDDKRQ 846 Query: 392 PFTD 395 P + Sbjct: 847 PIEE 850 >UniRef50_A1WBU7 N-6 DNA methylase n=19 Tax=Bacteria RepID=A1WBU7_ACISJ Length = 500 Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 103/387 (26%), Positives = 172/387 (44%), Gaps = 50/387 (12%) Query: 4 NDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLK------------MCKETGQEA-EYL 50 + L + LW+ + LR G V ++ + LLF K + ETG E + Sbjct: 11 SQLESHLWESANILR-GPVDAADFKTYIFPLLFFKRICDVWDEEYQEIVDETGDEQLAWF 69 Query: 51 PEGYR--------WDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQ 102 PE +R W+D++++ R M + + + + VF + + + Sbjct: 70 PESHRFQIPEDCHWNDVRTKASNVGTALQRAMR-EIEKANPDTLYGVFGDAQWSNKDRLS 128 Query: 103 ---ITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTI 159 + L+ + L + G + D GD YE L++K A+ T AG+++TPR +++ + Sbjct: 129 DALLKDLIEHFSKLPF--GNKNVNSDLLGDAYEYLIKKFADATNKKAGEFYTPRSVVRLM 186 Query: 160 IHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVP 219 I +L P+ E + DPA GT G L+ A ++VK Q D+ L G G E Sbjct: 187 IDMLDPKEAETIYDPACGTGGMLLAAVQHVKEQHGDVKRLWGK---------LYGQEKNL 237 Query: 220 GTRRLALMNCLLHDIEG-NLDHGGAIRLGNTLGSDGENLPKAHIVATNPPF-----GSAA 273 T +A MN LH IE + G +R N + + L V NPPF G Sbjct: 238 TTSSIARMNLFLHGIEDFQVVRGDTLR--NPAFFEVDRLATFDCVIANPPFSLEKWGEDL 295 Query: 274 GTN--ITRTF--VHPTSNKQLCFMQHIIETLH-PGGRAAVVVPDNVLFEGGKGTDIRRDL 328 N R F + P+S+ ++QH+++++ GR AVV+P LF G IR+ L Sbjct: 296 WLNDPFGRNFAGLPPSSSGDFAWVQHMVKSMADVSGRMAVVLPQGALFRKGVEGSIRQKL 355 Query: 329 MDKCHLHTILRLPTGIFYAQGVKTNVL 355 ++ + ++ L +FY G+ +L Sbjct: 356 LEMDLVEAVIGLAPNLFYGTGLAACIL 382 >UniRef50_A1T135 N-6 DNA methylase n=22 Tax=Actinomycetales RepID=A1T135_MYCVP Length = 544 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 107/427 (25%), Positives = 174/427 (40%), Gaps = 77/427 (18%) Query: 10 LWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQE------AEYLPEGYRWDDLKSRI 63 LWK D LR G +S Y + + L+FLK + E E +G + ++ I Sbjct: 25 LWKAADKLR-GSLSASQYKDVILGLVFLKYVSDAYDERREAIRTELEADGLDAEQIEDLI 83 Query: 64 -GQEQLQFYRKMLV-------HLGEDDKKLVQA---VFHNVSTTITEP------------ 100 E+ Q Y +V L E+ K L A N+ I E Sbjct: 84 EDPEEYQGYGVFVVPPGARWKFLAENAKGLPAAGGEPAKNIGQLIDEAMDAVMKANPTLQ 143 Query: 101 --------------KQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGA 146 +++ L+ +S + G++RD G++YE L A Sbjct: 144 GTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGDGRARDLMGEVYEYFLGNFARAEGKRG 203 Query: 147 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDF 206 G++FTP ++K I+ +L+P R V DP G+ G ++ ++++ DGD ++ Sbjct: 204 GEFFTPPSVVKVIVEVLEPS-RGRVYDPCCGSGGMFVQTEKFIYEH-------DGDPKEI 255 Query: 207 QIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATN 266 ++ G E + T R+A MN +H I+ + G R G+T D + V N Sbjct: 256 AVY----GQESIEETWRMAKMNLAIHGID---NKGLGARWGDTFARDQHPDVQMDYVLAN 308 Query: 267 PPFGSAAGTNIT-----------RTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVL 315 PPF NI R V P +N ++QHI+ L GG+A VV+ + + Sbjct: 309 PPF------NIKDWARNEEDARWRFGVPPANNANYAWIQHILYKLASGGKAGVVMANGSM 362 Query: 316 FEGGKGT-DIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDD 374 G DIR +++ + ++ LPT +F + G+ V FF K A + + Sbjct: 363 SSNSNGEGDIRAQIVEADLVSCMIALPTQLFRSTGIPVCVWFFAKDKTAGKQGSVDRSGQ 422 Query: 375 VWVYDLR 381 V D R Sbjct: 423 VLFIDAR 429 >UniRef50_B3EQE6 Type I restriction-modification system, M subunit n=30 Tax=Bacteria RepID=B3EQE6_CHLPB Length = 527 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 127/515 (24%), Positives = 202/515 (39%), Gaps = 102/515 (19%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQE-AEYLPEGYRWDDL 59 ++ D+ + W CD R G V Y + + +LFLK + Q+ E + Y DD+ Sbjct: 5 IDQKDINSAAWSACDTFR-GVVDPAQYKDYILVMLFLKYISDVWQDHYEEYQKQYGDDDI 63 Query: 60 KSRIGQEQLQF------------------------------YRK------------MLVH 77 + R E+ +F Y + +L H Sbjct: 64 RIRRKLERERFVLPVVKLTEKNDETGEEAVLDEFPATYYSLYERRSAANIGELINIVLDH 123 Query: 78 LGEDDKKLVQAVFHNV--------STTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGD 129 + + +K ++ VF N+ T +++ L+ + S D G+ Sbjct: 124 IEDSNKVKLEGVFRNIDFNSEANLGKTKDRNRRLKQLLEDFHKPQLNMKPSLVSEDVIGN 183 Query: 130 MYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYV 189 Y L+++ A+++ AG++FTP + + + L P+P + + DPA G+ G LI+A + V Sbjct: 184 TYIYLIERFASDSGKKAGEFFTPFKVSELVAKLADPRPGDRICDPACGSGGLLIKAAKEV 243 Query: 190 KSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNT 249 GD ++F A G E T L MN LH + I +T Sbjct: 244 -----------GD-RNF----ALFGQESNGSTWALCRMNMFLHSFD-----SARIEWCDT 282 Query: 250 LGS----DGENLPKAHIVATNPPFG-------SAAGTNITRTF--VHPTSNKQLCFMQHI 296 L S + + L K + V NPPF +A R + V P S F+ H+ Sbjct: 283 LNSPLLVENDRLMKFNCVVANPPFSLDKWGAENAESDQYNRFWRGVPPKSKGDWSFISHM 342 Query: 297 IE-TLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVL 355 +E L GR AVVVP VLF G IR+ ++++ L ++ LP +F + +L Sbjct: 343 VEIALEKEGRVAVVVPHGVLFRGAAEGRIRQKMIEENLLDAVIGLPGNLFQTTNIPVAIL 402 Query: 356 FFTK---GTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGL 412 F + GT + K DV D S + +DE + R Y E Sbjct: 403 VFDRSREGTTKDTKSTKGENRDVLFVDASREFVSGKNQNTLSDEQIAKIMRTYRE----- 457 Query: 413 SPRTEGEWSFNAEETEVADSEENKNTDQHLATSRW 447 RTE E + VAD E K D +L R+ Sbjct: 458 --RTEVE-----KYAHVADVAEIKENDFNLNIPRY 485 >UniRef50_C9NJI6 N-6 DNA methylase n=1 Tax=Streptomyces flavogriseus ATCC 33331 RepID=C9NJI6_9ACTO Length = 461 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 112/241 (46%), Gaps = 23/241 (9%) Query: 125 DDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIE 184 D ++YE L++ +N K G YFTPR L++ ++ +L P+ E V DPA G+ GFL+E Sbjct: 117 DRLVELYEECLERFSNNKK--GGNYFTPRHLVRLLVEMLAPRQGEQVFDPACGSGGFLVE 174 Query: 185 ADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAI 244 + RYV+ + +G ++ P R++A MN +E +L Sbjct: 175 SARYVQEHGGSSAAV-----------GLVGRDINPRARQVAWMNLTARGLEADLGS---- 219 Query: 245 RLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVH------PTSNKQLCFMQHIIE 298 R N+L +D +V NPPF + R P SN ++QH++ Sbjct: 220 RPVNSLWADDTPAGAFDVVFVNPPFNLKLARDDLRYDSRWRYGEPPRSNANFAWIQHVVS 279 Query: 299 TLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFT 358 L GRAA+++PD F G IRR L+ + ++ LP G+F + + F+ Sbjct: 280 KLTTRGRAAMLLPDGATFTSGAAAGIRRGLVADDLVSAVVALPAGLFPHTSISASAWIFS 339 Query: 359 K 359 + Sbjct: 340 R 340 >UniRef50_A5VVC4 Type I restriction-modification system, M subunit n=34 Tax=Brucella RepID=A5VVC4_BRUO2 Length = 523 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 101/402 (25%), Positives = 166/402 (41%), Gaps = 52/402 (12%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA------EYLPEGY 54 + +L LWK D LR G + +Y + LFLK + +E + LPE Sbjct: 19 LTRTELENHLWKSADILR-GSIDSSDYKIYIFGFLFLKRLSDRFEEEAKESIRQGLPENV 77 Query: 55 RWDDLKSR----IGQEQLQFYRKMLVHLG----------EDDKKLVQAVFHNV----STT 96 + D + + + +K+ +G ED ++ V N+ + Sbjct: 78 AYSDPDEHEFFLVERARWSSIKKLTTGIGDHLNKACAAIEDANPSIEGVLANIDFNSESR 137 Query: 97 ITEPKQ----ITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTP 152 + + K ++ L+ + +D N + + D G YE L+ K A++ G+++TP Sbjct: 138 LGDAKNREGVLSRLIDHFSRIDLSNASLSEP-DMLGRAYEYLIDKFADDAGKKGGEFYTP 196 Query: 153 RPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAF 212 + +++ I+ LL P+P + DP G+ G L++ +V L+G ++ Sbjct: 197 QHVVRLIVELLAPKPGMRISDPTCGSGGMLVQVAEHVAK-------LEGKRLGEALNITL 249 Query: 213 IGLELVPGTRRLALMNCLLHDI-EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFG- 270 G E GT +A MN LLH + + ++ G IR L DG NL V NPPF Sbjct: 250 HGQEKNLGTWAIAKMNLLLHGLRDARIEKGDTIRNPRLLDQDG-NLFLYDRVIANPPFSL 308 Query: 271 ------------SAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEG 318 G N + P + L F+QH++ TL+ G VV+P VLF G Sbjct: 309 DSWGAEDVSGDTEKKGHNRFIYGIPPKNMGDLAFVQHMVATLNTKGVCGVVMPHGVLFRG 368 Query: 319 GKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 360 IR ++ I+ LP +F G+ VL K Sbjct: 369 SGDGRIRESMLKADLFEAIIGLPENLFAGTGIPATVLILNKA 410 >UniRef50_Q0AUQ5 Type I restriction-modification system, M subunit n=7 Tax=Bacteria RepID=Q0AUQ5_SYNWW Length = 891 Score = 112 bits (280), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 76/254 (29%), Positives = 122/254 (48%), Gaps = 24/254 (9%) Query: 125 DDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIE 184 D G YE L++ A+ G+++TP +++ ++ L KP+ + DP G+ GFLI+ Sbjct: 179 DLLGAAYEYLIKYFADSAGKKGGEFYTPAEVVRLLVQLTKPEAGNTIYDPTVGSGGFLIQ 238 Query: 185 ADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI-EGNLDHGGA 243 + +YV+ Q D +DL A G + + MN +LH+I +++G Sbjct: 239 SYQYVEEQGQDPNDL-----------ALFGQDSNGTVWSICNMNMILHNITRFTIENGDT 287 Query: 244 IRLGNTLGSDGENLPKAHIVATNPPFG---SAAGTNITRTFVH--PTSNKQ--LCFMQHI 296 L + L D + V NPPF S A + F P + K+ L F+QH+ Sbjct: 288 --LEDPLILDKGKIRTFERVLANPPFSQNYSRANMKFSNRFWEWCPETGKKADLMFVQHM 345 Query: 297 IETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLF 356 + +L P G A ++P VLF GGK IR L++ + I+ LP G+FY G+ +L Sbjct: 346 LASLKPDGHMATIMPHGVLFRGGKEKLIREILINDDVIEAIISLPPGLFYGTGIPACILV 405 Query: 357 FTKGTVANPNQDKN 370 K + P+ KN Sbjct: 406 CNK---SKPDSLKN 416 >UniRef50_D1VS23 Type I restriction-modification system methyltransferase subunit n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VS23_9FIRM Length = 983 Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 106/379 (27%), Positives = 173/379 (45%), Gaps = 52/379 (13%) Query: 30 ELASLLFLKMCKETGQEAEY------LPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDK 83 E A++LFLK+ E+ Q WD +K+ ++++ K + D Sbjct: 180 EFANILFLKLISESEQIKRESGINTNFENACSWDSIKNIPISTRIEYINKTVYEKLND-- 237 Query: 84 KLVQAVFHNVSTTITEPKQI---TALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNAN 140 T I P QI + L MD LD S D GD +E L K + Sbjct: 238 --------LYETDIFTPLQIRDTSILKEIMDKLDPLTLTDVDS-DVKGDAFEYFL-KAST 287 Query: 141 ETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLD 200 TK+ G+YFTPR ++KT++ L+ PQ E + DP GT GFLIE+ R++ N++ D Sbjct: 288 STKNDLGEYFTPRHIVKTMVRLVNPQIGETIYDPFCGTGGFLIESFRHI---YNNMARTD 344 Query: 201 GDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGS--DG---- 254 + + + + G E + T R+ MN +L D I++ ++L + DG Sbjct: 345 ANLKMLR-EKTVYGNE-ITNTARITKMNMILAG-----DGHSNIKMKDSLANPIDGKSTY 397 Query: 255 ------ENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPG---GR 305 E+ IV N P+ + T + P++N +QH I+ + GR Sbjct: 398 IDEKGEEHHNGYDIVLANMPY--SQKTKYGNLYDLPSNNGDSICVQHCIKAVDSASENGR 455 Query: 306 AAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVAN 364 A+VVP+ LF T R L++ C L +++ LP G+F GVKT++++ TK Sbjct: 456 IALVVPEGFLFRKDL-TKTREYLLENCQLQSVISLPQGVFLPYTGVKTDIIYATKVNRKI 514 Query: 365 PNQDKNCTDDVWVYDLRTN 383 + +K D W +D++++ Sbjct: 515 SSSEKR--KDFWYFDVKSD 531 >UniRef50_B1ZYW9 N-6 DNA methylase n=31 Tax=cellular organisms RepID=B1ZYW9_OPITP Length = 563 Score = 111 bits (278), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 116/367 (31%), Positives = 172/367 (46%), Gaps = 38/367 (10%) Query: 52 EGYRWDDLKSRIGQEQLQFYRK----MLVHLGEDDKKLVQAVFHNVSTTITEPKQITALV 107 E RW + +E + L LG DD + + TI P + +V Sbjct: 77 EDCRWSRFQHLEAKEMFTVVSEHVFPFLRTLGGDDSTYAHHM-KDARFTIPTPALLAKVV 135 Query: 108 SNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQP 167 +D + + RD GD+YE +L K A+ ++G Q+ TPR +I+ ++ L P Sbjct: 136 DLIDQIPM------EDRDTKGDLYEYMLGKIASAGQNG--QFRTPRHIIQLMVELTAPTA 187 Query: 168 REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALM 227 ++V+ DPA GTAGFL+ A Y++++ ++ D + H F G + R+ M Sbjct: 188 KDVICDPACGTAGFLVAAGEYLRTRHPEILR-DTKLRQHFHHHLFHGFDFDNTMLRIGSM 246 Query: 228 NCLLHDIEGNLDHGGAIRLGNTLGSD--GENLPKAHIVATNPPF-GSAAGTNITRTF--V 282 N LLH +E N D IR ++L D GE K ++ NPPF GS N + + Sbjct: 247 NMLLHGVE-NPD----IRYRDSLAQDHAGEE-EKFTLLLANPPFAGSLDYENCAKDLQQI 300 Query: 283 HPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKG-TDIRRDLMDKCHLHTILRLP 341 T +L F+ + L PGGRAAV+VPD VLF +R+ L++ L ++ LP Sbjct: 301 VKTKKTELLFLALFLRLLKPGGRAAVIVPDGVLFGSSNAHRTLRKLLVEDQKLDAVISLP 360 Query: 342 TGIF--YAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSF-GKRTP-FTDEH 397 G+F YA GV T +L FTK + TD VW Y + + S KRT E Sbjct: 361 GGVFKPYA-GVSTAILLFTK-------TNSGGTDHVWFYKVEADGMSLDDKRTELLPSEK 412 Query: 398 LQPFERV 404 L P +V Sbjct: 413 LGPVPKV 419 >UniRef50_Q72BC7 Type I restriction-modification system, M subunit n=21 Tax=Bacteria RepID=Q72BC7_DESVH Length = 506 Score = 111 bits (277), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 110/404 (27%), Positives = 174/404 (43%), Gaps = 69/404 (17%) Query: 10 LWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQE------AEYLPEGYRWDDLKSRI 63 +W CD R G V Y + + ++LFLK + Q+ AEY G + ++ + Sbjct: 14 VWNACDTFR-GVVDASAYKDYVLTMLFLKYISDVWQDNYDTYKAEY---GDAPELIEEMM 69 Query: 64 GQEQL------QFY----RKMLVHLGEDDKKLVQA-----------VFHNVS---TTITE 99 E+ FY R+ GE K + A VF ++S T + + Sbjct: 70 KNERFVLPKDASFYALYERRFEAGNGERIDKALHAIEEANMGKLNDVFQDISFNSTKLGD 129 Query: 100 PKQITALVSNMDSLDWYNGAHGKSR-------DDFGDMYEGLLQKNANETKSGAGQYFTP 152 KQ ++ +M L+ ++ R D G+ YE L++ A + AG+++TP Sbjct: 130 DKQKNDILRHM--LEDFSKPELNLRPSRIGNLDIIGNAYEFLIKHFAASSGKKAGEFYTP 187 Query: 153 RPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAF 212 + + I L+ PQ + + DPA G+A L++ + +K + + A Sbjct: 188 PEVSQLIAELVNPQEGDEICDPACGSASLLMKCAKLIKDRFGNR------------KYAL 235 Query: 213 IGLELVPGTRRLALMNCLLHDIEGN-LDHGGAIRLGNTLGSDGEN-LPKAHIVATNPPF- 269 G E + T LA MN LH + + ++ G +R N L DG++ L IV NPPF Sbjct: 236 YGQEAIGSTWSLAKMNMFLHSEDNHRIEWGDTLR--NPLLLDGDDHLKHFDIVVANPPFS 293 Query: 270 --------GSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPG-GRAAVVVPDNVLFEGGK 320 A R + P + F+ H+IETL PG GR VVVP VLF Sbjct: 294 LDKWGHEAAEADRFGRFRRGIPPKTKGDYAFILHMIETLKPGTGRMGVVVPHGVLFRASS 353 Query: 321 GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVAN 364 +IR+ L+ + L ++ LP +FY G+ +L F K N Sbjct: 354 EGEIRKQLIKENLLDMVIGLPEKLFYGTGIPAAILVFRKNKKDN 397 >UniRef50_Q5LGD1 Putative modification protein of type I restriction-modification system n=1 Tax=Bacteroides fragilis NCTC 9343 RepID=Q5LGD1_BACFN Length = 890 Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 98/399 (24%), Positives = 171/399 (42%), Gaps = 55/399 (13%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEY----LPEGYRW 56 + L + LW+ C+ LR G + Y N + ++LFLK + Q LPEG + Sbjct: 3 IKKTQLYSILWESCNILR-GSMDASQYKNYVLTMLFLKYISDKVQSDSDIFFDLPEGCFF 61 Query: 57 DDL-----KSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMD 111 +D+ K IG+E + + D + +A F + + T ++ L S + Sbjct: 62 NDIVALKGKPNIGEEIQKKLHVIARANPRLDHIINEADFDDSTKLGTGKAKVDTLTSLIS 121 Query: 112 SL--DWYNGAHGKSRDD--FGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL---- 163 D+ + + ++ DD GD YE L++ A E+ GQ++TP + + + L+ Sbjct: 122 VFQRDFLDFSKNRAGDDDLIGDAYEYLMKNFAAESGKKKGQFYTPAEVSRLMARLIGIHK 181 Query: 164 KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHR---AFIGLELVPG 220 +P+ + DP G+ L+ A ++ HR + G EL Sbjct: 182 DNRPQISIYDPTCGSGSLLLRA-----------------AAEYTKHRDGVSIFGQELDGA 224 Query: 221 TRRLALMNCLLHDIEG-NLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAA----GT 275 TR +A+MN LH + L+ G I S L + V NPPF Sbjct: 225 TRGMAVMNMYLHGYDDPELEVGDTIE-KPFFKSTPNQLETFNYVVANPPFSQKGWIKGEI 283 Query: 276 NITRTF-----------VHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDI 324 I TF + P + F+ HII++++ GR A ++P+ VLF G + + Sbjct: 284 KINDTFGRWGNSDNLPPIPPIGYEDYAFLLHIIKSINSQGRGACILPNGVLFRGNEEEAV 343 Query: 325 RRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVA 363 RR +++K ++ I+ LPT +F+ G+ ++ K + Sbjct: 344 RRKIIEKRYIRGIISLPTNLFFGTGIPACIVIIDKAKTS 382 >UniRef50_A6LK23 Type I restriction-modification system, M subunit n=1 Tax=Thermosipho melanesiensis BI429 RepID=A6LK23_THEM4 Length = 799 Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 99/392 (25%), Positives = 168/392 (42%), Gaps = 57/392 (14%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEY----LPEGYRW 56 M L LW+ + LR GG+ Y N + ++LF+K + + Y +PE + Sbjct: 3 MRKTQLYTHLWEAANELR-GGMDASQYKNYVLTILFVKYVTDRYKNDPYADFVVPEDGSF 61 Query: 57 DDLKSRIGQEQL-QFYRKMLVHLGEDD--KKLVQAVFHNVSTTITEPK----QITALVSN 109 D L G+ + + K+L L E++ K ++ V + ST + K ++T L++ Sbjct: 62 DALVEAKGKPDIGERINKVLARLAEENELKGVIDLVDFDDSTKLGNGKDKVDKLTKLIAI 121 Query: 110 MDSLDW-YNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQ-- 166 ++ + ++ D GD+YE ++K A E GQ++TP + + + ++ + Sbjct: 122 FENPELNFSKNRADGDDILGDVYEYFMKKFATEAGKSKGQFYTPAEVSRIMAKIIGIENA 181 Query: 167 --PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRL 224 P + DP G+ L++ + + + G E+ L Sbjct: 182 NSPDQTAYDPTCGSGSLLLKV-----------------ADEAPVEISLYGQEIDIDVANL 224 Query: 225 ALMNCLLHDIEGNLDHGGAIRLGNTLG------SDGENLPKAHIVATNPPFGSAAGTN-- 276 A MN +LH G D I GNTL DG +L NPPF N Sbjct: 225 ARMNMILH---GKPD--AVIEQGNTLSDPKFKNKDG-SLKTFDFAVANPPFSQKNWMNGV 278 Query: 277 --ITRTF------VHPTSNKQLCFMQHIIETLHPG-GRAAVVVPDNVLFEGGKGTDIRRD 327 +F + P N F+ H I++L PG GR A+++P VLF G +IRR+ Sbjct: 279 DPENDSFHRFDDGIPPAKNGDYAFLLHFIKSLKPGKGRGAIILPHGVLFRGNAEAEIRRN 338 Query: 328 LMDKCHLHTILRLPTGIFYAQGVKTNVLFFTK 359 L+ K ++ I+ LP +FY G+ ++ K Sbjct: 339 LVKKGYIKGIIGLPPNLFYGTGIPAIIMVIDK 370 >UniRef50_Q2J5S8 N-6 DNA methylase n=5 Tax=Bacteria RepID=Q2J5S8_FRASC Length = 816 Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 94/327 (28%), Positives = 147/327 (44%), Gaps = 35/327 (10%) Query: 49 YLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVS 108 Y+PE RW L+ +I K L L + ++ V ++ T T + Sbjct: 129 YVPEKARWAWLRDQIHHNVGDALNKALELLEHHNSTALEGVVQHIDFTRTVGQSSIPDRK 188 Query: 109 NMDSLDWYNGAHGKSRD-DFGDM----YEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL 163 D + +N ++ D +F D+ YE L+ + A+ G+++TPR +++ ++ L+ Sbjct: 189 LRDLIAHFNTVRLRNEDFEFPDLLGAAYEYLIGEFADSAGKKGGEFYTPRAVVRMMVALV 248 Query: 164 KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRR 223 P+P V DP +G+ G LI A +V GD ++ ++ +G E G Sbjct: 249 DPKPGMEVYDPCSGSGGMLILARDWVAEH-------GGDPRNLRL----VGQEYNGGVWS 297 Query: 224 LALMNCLLHDIEGNLDHGGAIRLGNTLG-----SDGENLPKAHIVATNPPFG---SAAGT 275 ++ MN LLH I IR G+TL S GE L + V +NPPF S G Sbjct: 298 ISKMNLLLHGIPD-----ADIRNGDTLAEPMHVSSGE-LERFDRVLSNPPFSQNYSREGM 351 Query: 276 NITRTFV---HPTSNKQ--LCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMD 330 + F P K+ L F+QH++ L G AA V+P VLF GG DIR L+D Sbjct: 352 DRENRFRWGWAPEGGKKADLMFVQHMVAVLRANGVAATVMPHGVLFRGGTERDIRTALLD 411 Query: 331 KCHLHTILRLPTGIFYAQGVKTNVLFF 357 + ++ L +FY G+ VL Sbjct: 412 DDVIEAVIGLAPNLFYGTGIPACVLVL 438 >UniRef50_A4XPR7 Type I restriction-modification system, M subunit n=6 Tax=Proteobacteria RepID=A4XPR7_PSEMY Length = 908 Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 74/255 (29%), Positives = 111/255 (43%), Gaps = 36/255 (14%) Query: 125 DDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIE 184 D G YE L++ A+ AG+++TP +++ + + PQ V DP G+ G LI+ Sbjct: 177 DLLGTAYEWLIKHFADSAGKKAGEFYTPAEVVRICVEICDPQEDMSVYDPTVGSGGMLIQ 236 Query: 185 ADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAI 244 A Y++ D +L A G E + T + MN LLH I I Sbjct: 237 ARDYLRECGADAAEL-----------ALYGQEKMGTTWSICKMNMLLHGISH-----AVI 280 Query: 245 RLGNTL------GSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPT----------SNK 288 R +TL DG NL + V NPPF I + HP Sbjct: 281 RQQDTLREPQHQAEDG-NLMRFDRVLANPPFSQ---NYIKKDIKHPGRFPVWMPEKGKKA 336 Query: 289 QLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQ 348 L F+QH++ L GR A V+P VLF G + + R+ +D+ +L ++ LP+ +FY Sbjct: 337 DLMFVQHMLAVLKHDGRMACVMPHGVLFRGAEEREARKYFIDRGYLEAVIGLPSNLFYGT 396 Query: 349 GVKTNVLFFTKGTVA 363 G+ +L K A Sbjct: 397 GIPACILVLNKAGAA 411 >UniRef50_B0TYP3 Type I restriction-modification system methyltransferase subunit like protein n=14 Tax=Bacteria RepID=B0TYP3_FRAP2 Length = 531 Score = 107 bits (268), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 105/450 (23%), Positives = 182/450 (40%), Gaps = 69/450 (15%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKET-----------GQEAE-- 48 N + LW + LR G V Y + + L+FLK +T G+EA Sbjct: 9 NTKSMEETLWDSANKLR-GSVESSEYKHIVLGLIFLKFVSDTFEERREQLIAEGKEAFID 67 Query: 49 -----------YLPEGYRWDDLKSRIGQEQLQF-YRKMLVHLGEDDKKLVQAVFHNVSTT 96 YLPE RW +K Q+ + L + +++ L A+ N + Sbjct: 68 MVEFYTMENVFYLPEESRWSYIKQNAKQDDIALKIDTALSTIEKNNPSLKGALPDNYFSR 127 Query: 97 ITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLI 156 + ++ L S +D+++ N K D G +YE L K A G G+++TP+ ++ Sbjct: 128 LG--LDVSKLSSLIDTINNINTIADKGNDIVGRVYEYFLSKFAIAEGKGKGEFYTPKSIV 185 Query: 157 KTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLE 216 I ++++P ++ DPA G+ G +++ +++++ G+ +D I+ G E Sbjct: 186 NLIANMIEPYKGKIY-DPACGSGGMFVQSIKFIEAHK-------GNKKDISIY----GQE 233 Query: 217 LVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTN 276 T +LA MN + I NL A +T D KA + NPPF Sbjct: 234 YTGTTYKLAKMNLAICGISANLGDVPA----DTFFKDQHPDLKADFIMANPPFNQKDWRG 289 Query: 277 ITRTF---------VHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRD 327 + V P SN ++ +I+ L G A ++ + L GG+ IR+ Sbjct: 290 VNELLDDPRWAGYDVPPKSNANYGWILNIVSKLSQNGVAGFILANGALSGGGEEYKIRKK 349 Query: 328 LMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQ-----------DKNCTDDVW 376 L++ + IL LP +FY + + AN Q ++ T ++ Sbjct: 350 LIENDLVEAILILPQNMFYTTNISVTIWILN----ANKKQREFEQNGKQKNHRDRTKEIL 405 Query: 377 VYDLRTNMPSFGKR-TPFTDEHLQPFERVY 405 DLR F K+ F ++++Q Y Sbjct: 406 FMDLRQKGVPFEKKFIQFDEKNIQEISNTY 435 >UniRef50_B5Y2R2 Type I restriction-modification system, M subunit n=21 Tax=Bacteria RepID=B5Y2R2_KLEP3 Length = 814 Score = 107 bits (268), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 101/393 (25%), Positives = 167/393 (42%), Gaps = 62/393 (15%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAE----YLPEGYRW 56 + +L + LW CD LR GG+ Y + + +LLF+K + + +P+G + Sbjct: 3 IKKTELYSSLWASCDELR-GGMDASQYKDYVLTLLFMKYVSDKYKGDPDGIILIPKGASF 61 Query: 57 DDLKS-----RIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQ----ITALV 107 DD+ + IG + + RK+ D K ++ N + + K+ +T LV Sbjct: 62 DDMVALKNDKEIGDKINKIIRKLAEE--NDLKGVIDEADFNDEDKLGKGKEMIDRLTKLV 119 Query: 108 SNMDSLDWY-NGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQ 166 + LD N A G D GD YE L++ A E+ GQ++TP + + + ++ Sbjct: 120 GIFEGLDLSSNRADGD--DLLGDAYEYLMRHFATESGKSKGQFYTPAEVSRILAKVISIT 177 Query: 167 PR----EVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTR 222 P V DP G+ L++ + + + + G E+ T Sbjct: 178 PDTPQDATVYDPTCGSGSLLLKV-----------------SDETRRGLSIFGQEMDNATS 220 Query: 223 RLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGE------NLPKAHIVATNPPFGSAAGTN 276 LA MN +LH+ + I GNTL SD + L NPPF + T+ Sbjct: 221 ALARMNMILHN-----NATAKIWQGNTL-SDPQWKEANGKLKAFDFAVANPPFSNKNWTS 274 Query: 277 --------ITRTF--VHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRR 326 R V P N F+ HII++L G+ AV++P VLF G +IR Sbjct: 275 GLDPKKDPFERFVWGVPPEKNGDYAFLLHIIKSLKSTGKGAVILPHGVLFRGNAEANIRE 334 Query: 327 DLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTK 359 +L+ + ++ I+ LP +FY G+ ++ K Sbjct: 335 NLIKQGYIKGIIGLPANLFYGTGIPACIIVIDK 367 >UniRef50_C2EIH9 Restriction-modification protein n=1 Tax=Lactobacillus salivarius ATCC 11741 RepID=C2EIH9_9LACO Length = 767 Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 105/393 (26%), Positives = 191/393 (48%), Gaps = 46/393 (11%) Query: 5 DLVAKLWKLCDN-LRDGGVSY-QNYVNELASLLFLKMCKETGQEAEY-LPEGYRWDDLKS 61 DL+ L+++ +N LR+ GV+ +E ++LLFLK+ + +E Y + + + WD K+ Sbjct: 156 DLI-NLFRVANNKLREAGVNAGVTRFSEFSNLLFLKLVSDLNEERNYNIKDEFLWDTYKT 214 Query: 62 RIGQEQLQFYRKMLVH-------LGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLD 114 G + + ++ E+D L + I +P ++ +V +D+L+ Sbjct: 215 YEGNALINYINNTVIDGLNKKFDSSEEDNGLFTPLH------IKDPIKLKEIVDKLDTLN 268 Query: 115 WYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDP 174 + D GD +E +QK N+T + G+YFTPR +++ + ++KP + + DP Sbjct: 269 F----KKIDTDIKGDAFEYFIQK-YNQTNNDLGEYFTPRHIVRFLNDIVKPTYGDKIYDP 323 Query: 175 AAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI 234 GT G LI A + ++ + LD DT + G E + T R+A MN +L Sbjct: 324 FCGTGGMLIVAFERILNELEERGKLDEDTLTNLREQTIWGGE-ISDTARIAKMNMILSG- 381 Query: 235 EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNK-QLCFM 293 +G H ++ + + + K +IV +N PF TN + P K + Sbjct: 382 DG---HSNIMQHDSFMNPVSD---KYNIVISNIPFNMEV-TNEQSSLYEPDIKKGNAVAI 434 Query: 294 QHIIETL---HPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIF--YAQ 348 HI++ L +P RAA++VPD VL + D+R++++ L I+ LP+ +F Y + Sbjct: 435 LHILKALKNNNPYSRAAIIVPDAVLNDKSM-KDLRKNIVSSGQLLGIVSLPSKVFLPYTE 493 Query: 349 GVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLR 381 KT++L F G+ N T++++VY ++ Sbjct: 494 A-KTSILIF--GSKTNI-----PTENIFVYKVK 518 >UniRef50_C6DZ06 Type I restriction-modification system, M subunit n=28 Tax=cellular organisms RepID=C6DZ06_GEOSM Length = 827 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 102/401 (25%), Positives = 169/401 (42%), Gaps = 64/401 (15%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAE------YLPEGY 54 + +DL + LW CD LR GG+ Y + + +LF+K + +A+ +P G Sbjct: 3 VKKSDLYSSLWASCDELR-GGMDASQYKDYVLFMLFIKYISDKYADADCFAPAVVIPPGA 61 Query: 55 RWDDL-----KSRIGQEQLQFYRKMLVHLGEDDKKLVQAVF------HNVSTTITEPKQI 103 + D+ KS IG++ LV E ++L ++ F + + + +++ Sbjct: 62 SFKDMIVLKGKSDIGEKINTQVIAPLVKSNE--RRLGRSDFPDFDDPNRLGEGQAKVERL 119 Query: 104 TALVSNMD--SLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIH 161 T L+S + +LD ++ + D GD YE L++ A E+ GQ++TP + + + Sbjct: 120 TNLISIFENPALD-FSKNRAEHDDILGDAYEYLMRHFATESGKSKGQFYTPSEVSRVVAK 178 Query: 162 LLKPQPREVVQ-----DPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLE 216 ++ +V DP G+ L++ V + L+G +D Sbjct: 179 VIGISRANIVASTSAYDPTCGSGSLLLK----VAEEAGKHITLEGQEKDVT--------- 225 Query: 217 LVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGS----DGENLPKAHIVATNPPFGSA 272 T LA MN +LH I GNTL + DG+ L V NPPF Sbjct: 226 ----TAGLARMNMILHHFPT-----ANILSGNTLAAPKFKDGKQLRTYDYVVANPPFSDK 276 Query: 273 --------AGTNITRTF--VHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGT 322 A + R V PT ++ HII ++ G+AA ++P VLF G Sbjct: 277 TWSTGLLPANDDFERFAWGVPPTKQGDYAYLLHIIRSMKSTGKAACILPHGVLFRGNAEA 336 Query: 323 DIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVA 363 IR+ L+ +L I+ LP +FY G+ +L K A Sbjct: 337 TIRKQLVRSGYLKGIIGLPANLFYGTGIPACILVLDKENAA 377 >UniRef50_D0SHY2 Predicted protein n=2 Tax=Acinetobacter RepID=D0SHY2_ACIJU Length = 142 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 56/103 (54%), Positives = 70/103 (67%), Gaps = 4/103 (3%) Query: 160 IHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVP 219 + ++P+P EV+QDPA GTAGFLI AD Y++ Q +DL L F AF+G+ELVP Sbjct: 1 MRCMQPKPSEVIQDPACGTAGFLIAADAYIR-QHHDLYALTEQETQFYTLDAFVGVELVP 59 Query: 220 GTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHI 262 TRRLA MNCLLHDI G GAI+LGN+LG G+ L KA + Sbjct: 60 NTRRLAQMNCLLHDIGGE---QGAIKLGNSLGPVGQALAKADV 99 >UniRef50_A9A373 Type I restriction-modification system, M subunit n=1 Tax=Nitrosopumilus maritimus SCM1 RepID=A9A373_NITMS Length = 523 Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 102/431 (23%), Positives = 185/431 (42%), Gaps = 48/431 (11%) Query: 49 YLPEGYRWDDLKS---RIGQEQLQFYRKMLVHLGED-DKKLVQAVFHNVSTTITEPKQIT 104 YLPE RW+ L++ +G + ++ +K+ ED ++K + I E T Sbjct: 77 YLPEDTRWNKLQNVSEDVGSKIIEICKKI-----EDANQKKLGGTMMVSEFNIKEKYPDT 131 Query: 105 ALVSNMDSLDWYNGAHGKSR-------DDFGDMYEGLLQKNANETKSGAGQYFTPRPLIK 157 ALV +D + + + R D FGD YE LL+ A+ETK GQ++TPR +++ Sbjct: 132 ALVKLIDHFSTTDEGYFRLRNSDLENEDIFGDAYEQLLEMFASETKKKGGQFYTPRKVVQ 191 Query: 158 TIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLEL 217 ++ L++P+ + DP G+ G LI + +YV+ + ++ + G + Sbjct: 192 LLVELMEPKYDYRINDPTCGSGGMLIHSRQYVEKSLKKEKKSSKEIEELLKNLTLHGQDS 251 Query: 218 VPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFG------- 270 T + MN ++H + G + DG+ + ++A N PF Sbjct: 252 NIDTVNMCKMNMVIHGVPSFSIEWGDVLESPKFVKDGKLIEYDRVLA-NFPFSENWEASG 310 Query: 271 -SAAGTNITRTFVHPTSNK-QLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDL 328 G + + P +K F+ H++ +L+ G+AA+V VLF G IR ++ Sbjct: 311 KENDGYGRFKYGIAPAKDKADFAFILHMLSSLNENGKAAIVCSQGVLFRGSSEQKIRENM 370 Query: 329 --------MDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDL 380 + + I+ LP +FY G+ VL K P + KN +++Y Sbjct: 371 IAGNKDENLQGDMIEAIIALPVALFYGTGIPACVLILNKNK---PKERKNKI--LFIY-- 423 Query: 381 RTNMPSFGK-RTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTD 439 N GK R D+ ++ + + + + E ++ AE E+ ++E N N Sbjct: 424 AANEFQEGKVRNKLRDKDIEHIVKAFK------AFKDEDKYCHVAELDEIRENEFNLNVP 477 Query: 440 QHLATSRWRKF 450 +++ S K Sbjct: 478 RYVDISEEEKI 488 >UniRef50_A7HVM7 Type I restriction-modification system, M subunit n=14 Tax=cellular organisms RepID=A7HVM7_PARL1 Length = 505 Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 116/483 (24%), Positives = 193/483 (39%), Gaps = 82/483 (16%) Query: 11 WKLCDNLRDGGVSYQNYVNELASLLFLKMC------------KETGQEAE---------- 48 W CD R G V Y + + +LFLK K+ G++ Sbjct: 15 WAACDTFR-GVVDAGQYKDYILVMLFLKYISDLWNDHVEVYRKQFGEDEARIRRRLERER 73 Query: 49 -YLPEGYRWDDLKSRIGQEQL-QFYRKMLVHLGEDDKKLVQAVFHNV----STTITEPKQ 102 LPEG + DL ++ + + + L + + ++ ++ VF N+ + K Sbjct: 74 FILPEGTSFYDLHAQRTEANIGELINIALEKIEDANRAKLEGVFRNIDFNSEANLGRVKD 133 Query: 103 ITALVSNM------DSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLI 156 + NM +LD + D G+ Y L+ + A++ AG+++TP + Sbjct: 134 RNRRLKNMLEDFAKPALDLR--PSRVTEDIIGECYIYLISRFASDAGKKAGEFYTPSAIS 191 Query: 157 KTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLE 216 + + L P+P + + DPA G+ LI A V S+ + A G E Sbjct: 192 RLLAKLAAPKPGDTICDPACGSGSLLIRAAEEVGSE----------------NFALYGQE 235 Query: 217 LVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGS----DGENLPKAHIVATNPPF--- 269 + T LA MN LH I +TL S +G++L K +V NPPF Sbjct: 236 VNGATWALARMNMFLH-----AKDAARIEWCDTLNSPALVEGDHLMKFDVVVANPPFSLD 290 Query: 270 ---GSAAGTNITRTF---VHPTSNKQLCFMQHIIETL-HPGGRAAVVVPDNVLFEGGKGT 322 A T+ + F + P S F+ H+IE GR AV+VP VLF GG Sbjct: 291 KWGAENADTDQFKRFWRGIPPKSKGDYGFITHMIEIAKRQSGRVAVIVPHGVLFRGGAEG 350 Query: 323 DIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG-TVANPNQDKNCTDDVWVYDLR 381 IR+ L+++ L ++ LP +F G+ +L F + N+D+ DV D Sbjct: 351 RIRQALIEENLLDAVVGLPANLFTTTGIPVAILVFDRSREQGGANEDRR---DVLFIDAS 407 Query: 382 TNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQH 441 + + H+ Y +P+ +S A E+A+++ N N ++ Sbjct: 408 KEFTPGKTQNVMDEAHIARVLEAYASRAE--TPK----YSHRASPEEIAENDFNLNIPRY 461 Query: 442 LAT 444 + T Sbjct: 462 VDT 464 >UniRef50_D2R8Y7 Type I restriction-modification system, M subunit n=2 Tax=Bacteria RepID=D2R8Y7_9PLAN Length = 835 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 98/378 (25%), Positives = 161/378 (42%), Gaps = 58/378 (15%) Query: 14 CDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEY----LPEGYRWDDLKSRIGQEQL- 68 CD LR GG+ Y + + LLFLK + Y +P+G + D+ + G + + Sbjct: 51 CDELR-GGMDASQYKDYVLVLLFLKYISDKYANVPYAPIEVPKGSSFKDMVALKGTKDIG 109 Query: 69 -QFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNM------DSLDWY-NGAH 120 +K++ + + ++ L N ST + K+ ++N+ SLD+ N A Sbjct: 110 DDINKKIIAPIAQANR-LSDMPDFNDSTKLGSGKEKVDRLTNLIAIFENKSLDFSKNRAD 168 Query: 121 GKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL-----KPQPREVVQDPA 175 G D GD YE L++ A E+ GQ++TP + + I ++ K V DP Sbjct: 169 GD--DILGDAYEYLMRHFATESGKSKGQFYTPAEVSRIIAQIIGIKTAKTTGSTTVYDPT 226 Query: 176 AGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE 235 G+ L++ + + Q G E T LA MN +LH++ Sbjct: 227 CGSGSLLLKV-----------------SDEAQTPVTLYGQEKDAATSGLARMNTILHNMP 269 Query: 236 GNLDHGGAIRLGNTLGS----DGENLPKAHIVATNPPFG---------SAAGTNITRTF- 281 L I GNTL + DG +L V NPPF A+ + T Sbjct: 270 TAL-----IEQGNTLSNPRFVDGSSLKTFDYVVANPPFSDKRWSTGLDPASDPHARFTLG 324 Query: 282 VHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLP 341 + P ++ HII +L G+ A ++P VLF G +IR++L+ K ++ I+ LP Sbjct: 325 IPPAKQGDYAYLLHIIRSLKSTGQGACILPHGVLFRGNAEAEIRKNLLRKGYIKGIIGLP 384 Query: 342 TGIFYAQGVKTNVLFFTK 359 +FY G+ ++ K Sbjct: 385 ANLFYGTGIPACIVVIDK 402 >UniRef50_B0VGE9 Restriction modification system DNA specificity domain:N-6 DNA methylase:Type I restriction-modification system, M subunit n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VGE9_9BACT Length = 837 Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 86/344 (25%), Positives = 159/344 (46%), Gaps = 51/344 (14%) Query: 54 YRWDDL--KSRIGQEQLQFYRKMLVHLGEDDK--KLVQAVFHNVSTTITEPKQITALVSN 109 Y W+ L + G+ ++ Y+ L + + L + +F N +P+ + + Sbjct: 64 YAWNRLFDQKLSGEGRVMLYQDALTKIPNNASIPTLFRDIFKNAFLPYRDPETLKLFLKC 123 Query: 110 MDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPRE 169 +D + + + GD +E LL ++ AGQ+ TPR +I ++ L+ PQ + Sbjct: 124 IDEFTY------EHSEKLGDAFEYLLAVLG--SQGDAGQFRTPRHIIDFMVELIDPQKED 175 Query: 170 VVQDPAAGTAGFLIEADRY-VKSQTNDLDDLDGDTQDFQIH------------------- 209 + DPA GTAGFLI A ++ +K+ +++ D ++ D F +H Sbjct: 176 SILDPACGTAGFLISAYKHIIKTNSSNYDKVN-DPHTFAMHNTPLDELVIQNGKKYTGDL 234 Query: 210 -----RAFI-----GLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPK 259 RAF+ G ++ RL+L+N LH + I +TL S Sbjct: 235 LTPDQRAFLHKNIKGYDIAFEMVRLSLVNMYLHGF-----NTPQIFEYDTLTSTERWNEY 289 Query: 260 AHIVATNPPFGS-AAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEG 318 A+++ NPPF + G F ++ F+ +++E L GRA ++VP+ ++F+ Sbjct: 290 ANVILANPPFMTPKGGIRPHHKFTIQAKRSEVLFVDYMLEHLTNNGRAGIIVPEGIIFQS 349 Query: 319 GKG-TDIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKG 360 G +R+ L+++ +L ++ LP G+F GVKT++L+ K Sbjct: 350 GNAYKQLRKLLVEENYLVGVISLPAGVFNPYSGVKTSILWIDKA 393 >UniRef50_Q6YRQ9 Slr6095 protein n=4 Tax=Bacteria RepID=Q6YRQ9_SYNY3 Length = 477 Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 90/336 (26%), Positives = 149/336 (44%), Gaps = 48/336 (14%) Query: 49 YLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFH-----NVSTTITEPKQI 103 ++PE RW ++ + K L L E + L + H V T ++ Sbjct: 46 FVPERARWATIRDELHDNVGNGLNKALAALEESNVALSGVLGHIDFNRKVGKTTLSDTKL 105 Query: 104 TALVSNMDSLDWYNGAHGKSRDDF------GDMYEGLLQKNANETKSGAGQYFTPRPLIK 157 L+ + + N +DF G YE L+ + A+ G+++TPR +++ Sbjct: 106 RELIFHFNKYRLLN-------EDFVFPDLLGAAYEYLIAEFADSAGKKGGEFYTPRDVVQ 158 Query: 158 TIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLEL 217 ++ L+KP + DP G+ G LI+A +Y+ ++ GD+++ + G + Sbjct: 159 LMVRLVKPAAGMSIYDPCVGSGGMLIQAKQYI-------EECGGDSRNLSL----CGQDN 207 Query: 218 VPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGS-----DGENLPKAHIVATNPPFG-S 271 G + +N LLH I+ I +TL + DGE L + V +NPPF + Sbjct: 208 NGGVWAICKINMLLHGIKD-----ARIENEDTLQNPRHIVDGE-LERFDRVLSNPPFSQN 261 Query: 272 AAGTNI--TRTFVH---PTSNKQ--LCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDI 324 TN+ F H P S K+ L F QH++ L GG A V+P VLF GG I Sbjct: 262 YEKTNLEFKNRFNHGWCPESGKKADLMFAQHMLSVLKVGGIVATVMPHGVLFRGGDEQKI 321 Query: 325 RRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 360 R+ L++K + I+ LP +FY G+ +L + Sbjct: 322 RKSLIEKDQIEAIIGLPPNLFYGTGIPACILVMRRA 357 >UniRef50_B6ENI7 N-6 adenine-specific DNA methylase n=19 Tax=root RepID=B6ENI7_ALISL Length = 587 Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 94/397 (23%), Positives = 166/397 (41%), Gaps = 67/397 (16%) Query: 10 LWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAE--------------------- 48 LW+ D LR G + + + + ++FLK + +E++ Sbjct: 14 LWETADILR-GNMDASEFKDYIFGMMFLKRLSDAFEESQEKVIQYYLDKGKTQAQAEELA 72 Query: 49 ----------YLPEGYRWD---DLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVST 95 ++PE RW DLK IG EQL + + + ++ + N+ Sbjct: 73 NDEDEYDSTFFIPENARWSVLKDLKHNIG-EQLNKATESIEEFNSALEGVLVTIDFNIKN 131 Query: 96 TITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPL 155 +++ K++ L+S+ + N + D G YE L++ A+ G+++TP + Sbjct: 132 KLSD-KKLQDLLSHFNKYRLRNEDFDRP-DLLGTAYEYLIKMFADSAGKKGGEFYTPSEV 189 Query: 156 IKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGL 215 ++ ++ LLKP + DP +G+ G L++ ++ Q + +L + G Sbjct: 190 VQLLVELLKPHAGMRIYDPTSGSGGMLVQTRNQLEKQGENAANL-----------SLYGQ 238 Query: 216 ELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTL----GSDGENLPKAHIVATNPPFGS 271 E+ T + MN LH ++ N D IR G+TL ++G L V NPPF Sbjct: 239 EMNLNTWAICKMNMFLHGVQ-NAD----IRKGDTLRDPQHTEGGELMSFDRVIANPPFSL 293 Query: 272 AA---------GTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGT 322 G P L F+QH+I + + G VV+P VLF G Sbjct: 294 KKWGKDECDNDGFGRFPYGTPPKDAGDLAFVQHMIASTNSEGMVGVVMPHGVLFRGSSEK 353 Query: 323 DIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTK 359 IR+ +++ L ++ LP+G+FY G+ +L K Sbjct: 354 AIRQGILEDDLLEAVVGLPSGLFYGTGIPACLLIINK 390 >UniRef50_A8GYC6 Type I restriction-modification system methyltransferase subunit n=22 Tax=Rickettsia RepID=A8GYC6_RICB8 Length = 517 Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 96/351 (27%), Positives = 161/351 (45%), Gaps = 49/351 (13%) Query: 29 NELASLLFLKMCKETGQEAEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQA 88 +E A++LFLK+ E +++ W+ +K++ + + + ++ + K Sbjct: 177 SEFANILFLKLLSENNEKS-------WWNSIKAQSDDDIIGYINGHVIE--QIKNKYGGD 227 Query: 89 VFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQ 148 VF +S + + L +D++D + +D+ +E L+K T G+ Sbjct: 228 VFTPISLSNSH-----TLRHIIDAIDPLILSSTNIKDN---AFEYFLEK-TRSTCDYLGE 278 Query: 149 YFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQI 208 YFTP+ +IK I+ + P+ E V DP G+ GFL EA +Y+K N++ + D D + + Sbjct: 279 YFTPKNIIKLTINYVDPKFGETVYDPFCGSGGFLTEAFKYIKE--NNIINTDEDLKRLR- 335 Query: 209 HRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLP------KAHI 262 H G E + T R+A MN +LH D I+ N+L + P K I Sbjct: 336 HNTLYGRE-ITTTARIAKMNMILHG-----DGHSGIQQINSLENSKYIRPTTNQTLKFDI 389 Query: 263 VATNPPFGSAA-------GTNITRTFVH-------PTSNKQLCFMQHIIETLHPGGRAAV 308 + TN PF G +T + +N + H ++ L GGR A+ Sbjct: 390 IVTNMPFSQEITKKTIKNGKTVTENHIAHLYYNGIAKNNGDAACVFHCLQNLREGGRMAL 449 Query: 309 VVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFT 358 VVP+ LF +R+ L+ K L T++ LP G F GVKT++L+FT Sbjct: 450 VVPERFLFRRDTAA-VRQFLLSKAKLQTVISLPQGTFLPYTGVKTSILYFT 499 >UniRef50_O27025 Type I restriction modification enzyme, subunit M n=6 Tax=Archaea RepID=O27025_METTH Length = 616 Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 87/325 (26%), Positives = 143/325 (44%), Gaps = 33/325 (10%) Query: 50 LPEGYRWDDLKSRIGQEQLQFY--RKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALV 107 + E Y WD+++ + ++F K L L K +V A T E ++I + Sbjct: 190 IKEEYLWDNIRKDVENLPIKFAGALKNLAELNPAFKDVVDAFDFVEFTQSQENREILRQL 249 Query: 108 SNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQP 167 + S D GD YE +L+ A TK+ G+ +TPR +I+ ++ +L P+P Sbjct: 250 VELFS---EKKLTNVDPDILGDAYEWILRYFA-PTKAKEGEVYTPREVIRLLVEILDPKP 305 Query: 168 REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFI-GLELVPGTRRLAL 226 E V DPA+ + G LI + +YVK + R F+ G E+ T L Sbjct: 306 GESVYDPASASNGMLIISHKYVKETYG------------EAERLFLYGQEVNRKTMALGS 353 Query: 227 MNCLLHDIEG-NLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGS--------AAGTNI 277 MN +HDI+ ++ HG + SDG + + +V NPP+ G Sbjct: 354 MNMYIHDIKDHHIAHGDTLLYPKFKESDG--IMRFDVVIANPPWNQDGYGEDTLKKGDYW 411 Query: 278 TRTFVHPTSNKQ---LCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHL 334 F + NKQ ++QH+I + GR VV+ + LF GG+ IR +++ + Sbjct: 412 RERFRYGFVNKQSADWAWIQHMIASAKDDGRIGVVIDNGCLFRGGREKSIRSAVLEDDLI 471 Query: 335 HTILRLPTGIFYAQGVKTNVLFFTK 359 ++ LP +FY G ++ K Sbjct: 472 EAVILLPEKLFYNTGAPGAIIILNK 496 >UniRef50_C4Z2E8 Type I restriction enzyme M protein n=4 Tax=Firmicutes RepID=C4Z2E8_EUBE2 Length = 892 Score = 105 bits (261), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 108/409 (26%), Positives = 168/409 (41%), Gaps = 75/409 (18%) Query: 6 LVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKET---------------GQEAEYL 50 L A LW CD LR GG+ Y + + +LLF+K + + + Sbjct: 8 LYASLWASCDKLR-GGMDSSEYKDYILTLLFMKYVTDKFKNKGAYEDIKVFDKAHDKDPD 66 Query: 51 PE---GYRWDDLKSRIGQEQL-QFYRKMLVHLGEDD---KKLVQAVFHNVSTTITEPKQI 103 PE G +DD + G++ + + K++ L +++ K ++ N + K++ Sbjct: 67 PEKRTGCSFDDFIALKGKKNIGEGMDKIIARLADENTDLKGVIDIAHFNDEKKLGSGKEM 126 Query: 104 TALVSNMDS------LDWY-NGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLI 156 ++++ S LD+ N A G D GD YE L++K A E+ GQ++TP + Sbjct: 127 VDKLTDLISIFQRPELDFSRNKAEGD--DIIGDAYEYLMRKFATESGKSKGQFYTPAEVS 184 Query: 157 KTIIHLLK----PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAF 212 + + +++ V DPA G+ LI A D F I Sbjct: 185 RILANVVGISHCTDASATVCDPACGSGSLLIRA---------------IDAAPFPIMG-- 227 Query: 213 IGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLG-------SDGENLPKAHIVAT 265 G E T LA MN +LH + I+ GNT SD L + + Sbjct: 228 YGQEKESTTAGLAKMNAVLHRKAEII-----IKSGNTFSNPQYMDKSDNSVLERFDYIVA 282 Query: 266 NPPFG------SAAGTNITRTFVH----PTSNKQLCFMQHIIETLHPGGRAAVVVPDNVL 315 NPPF AG R + P N ++ HI++TL G+AAV++P VL Sbjct: 283 NPPFSMKNWRDGIAGKEYGRFEGYGDMPPEKNGDYAWLMHILKTLKSNGKAAVILPHGVL 342 Query: 316 FEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVAN 364 F G IR ++ K + I+ LP +FY G+ VL K AN Sbjct: 343 FRGNAEATIRETIIKKHWIKGIISLPANLFYGTGIAACVLVIDKEGAAN 391 >UniRef50_A3XVM8 Type I restriction-modification system M subunit n=1 Tax=Vibrio sp. MED222 RepID=A3XVM8_9VIBR Length = 812 Score = 104 bits (260), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 108/428 (25%), Positives = 178/428 (41%), Gaps = 78/428 (18%) Query: 10 LWKLCDNLRDGGVSYQNYVNELASLLFLKM---------------------CKETGQE-- 46 LW+ D LR G + +Y + +LFLK KE +E Sbjct: 14 LWESTDILR-GSLDAADYRENILGMLFLKRLSDVFEDKKQKVIQHYIDNGRTKEQAKELA 72 Query: 47 ---AEYL-----PEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTIT 98 +EY+ PE W L + + +E Q + ++ + E + +L NV T+I Sbjct: 73 RNRSEYVNTFFVPENANWSAL-TNVKEEIGQSLDRSMLAIEEHNSEL-----KNVLTSID 126 Query: 99 EPKQITALVSNMDSLDWYNGAHGKSRDDF------GDMYEGLLQKNANETKSGAGQYFTP 152 K+ + + L + +DF G YE L++ A+ ++TP Sbjct: 127 FGKKTRLSNAQLRDLVLHFSKCRLLDEDFECPDILGKAYEYLIKMFADSAGRKGSGFYTP 186 Query: 153 RPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAF 212 R ++K ++ LL+P V DP G G L+++ Y+K D ++ + Sbjct: 187 REVVKLMVSLLEPSSGMSVYDPTVGAGGMLVQSRNYLKDIGKD------------VNLSL 234 Query: 213 IGLELVPGTRRLALMNCLLHDIEGNLD--HGGAIRLGNTLGSDGENLPKAHIVATNPPF- 269 G E+ GT + MN L E N+D HG +R N ++ L V ++PPF Sbjct: 235 YGQEVNQGTWTICRMNMFLQG-ESNVDIRHGDTLR--NPKHTEANRLITFDRVISHPPFS 291 Query: 270 ----GSAAGTNIT----RTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKG 321 G +N T + + P ++ F+QH + T++ GRA VV+P L GK Sbjct: 292 LKEWGGDELSNDTFGRFKYGIPPRNSGDFAFIQHTLATMNESGRAVVVLPHGPLHRAGKS 351 Query: 322 -TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTK-------GTVANPNQDKNCTD 373 DIRR +++ + ++ LP GIFY G+ T +L K G V + Sbjct: 352 ELDIRRGMLEDDVIEAVIGLPAGIFYGTGIPTCLLILNKCKGRKQRGKVLFVDASNGFKS 411 Query: 374 DVWVYDLR 381 + W+ +LR Sbjct: 412 NKWMMELR 419 >UniRef50_D0MHM2 N-6 DNA methylase n=3 Tax=Bacteria RepID=D0MHM2_RHOM4 Length = 527 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 105/427 (24%), Positives = 181/427 (42%), Gaps = 59/427 (13%) Query: 49 YLPEGYRWDDLKSRIGQEQL-QFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQ-ITA- 105 Y+PE RW +++R GQ L QF + + ++ +L Q V V T Q I A Sbjct: 85 YIPENARWKAIRTR-GQVGLGQFLTDAVRAVARENPRL-QGVIDIVDFNATAAGQRIVAD 142 Query: 106 --LVSNMDSLDWYN-GAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHL 162 L +D L + G D G YE LL+K A AG+++TPR + + + Sbjct: 143 EYLARLVDVLSRHRLGLRDVEPDILGRAYEYLLRKFAEGQGQSAGEFYTPREVAVLMARI 202 Query: 163 LKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRA---FIGLELVP 219 L+PQP V DP G+ G LI+ +++ ++ +G + H A G E+ P Sbjct: 203 LEPQPGMTVYDPCCGSGGLLIKC--HLRLLETHGEEQNGHRR-LPAHHAPLQLFGQEINP 259 Query: 220 GTRRLALMNCLLHDIEGNLDHGGAIRLGNTL-----GSDGENLPKAHIVATNPPFGSAAG 274 T +A MN ++HD+E + IRLG+T+ + L +V NP + Sbjct: 260 ATFAMARMNAVIHDMEAD------IRLGDTMRHPAFRDETGRLMAFDLVTANPMWNQNFP 313 Query: 275 TNITRT--------FVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEG------GK 320 T++ + P S+ ++QH++ +L+ GR AVV+ + G + Sbjct: 314 TDLYENDPYERFHLGIPPASSADWGWLQHMLASLNDTGRMAVVLDTGAVSRGSGNQGASR 373 Query: 321 GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDL 380 DIR+ +++ + ++ LP +FY G + N+ K ++ + + Sbjct: 374 ERDIRKAFVERDLIEAVILLPENLFYNTT--------APGIIIVINRKKRHPGEILLINA 425 Query: 381 RTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQ 440 + TDEH++ R+Y EW + + +EE D Sbjct: 426 SKLFAKGRPKNYLTDEHIETIARLY------------HEWQAEEGLSAIITNEEAARNDY 473 Query: 441 HLATSRW 447 +L+ SR+ Sbjct: 474 NLSPSRY 480 >UniRef50_C8VZI4 Type I restriction-modification system, M subunit n=9 Tax=Bacteria RepID=C8VZI4_DESAS Length = 527 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 101/418 (24%), Positives = 170/418 (40%), Gaps = 76/418 (18%) Query: 5 DLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQE-AEYLPEGYRWDDLKSRI 63 D+ A +W+ + R G + NY + + +LF+K ++ E E L + Y D +++ Sbjct: 7 DIEAAIWRGANTFR-GAIDAANYKDYILPMLFVKYLSDSYLEKVEKLEQKYN-DPVRAER 64 Query: 64 GQEQLQFYRK-----------------------MLVHLGEDDKKLVQAVFHNVSTTI--- 97 +L F K L + +D+ L VF N+ Sbjct: 65 AINRLPFAIKEKHRFSWLYQNRYNDNLGELINIALRGIEDDNPSLFTGVFRNIDFNSEAM 124 Query: 98 -----TEPKQITALVSNMDSLDWYNGA----HGK-SRDDFGDMYEGLLQKNANETKSGAG 147 + ++ L+ + + LD A GK + D GD YE ++ + A + AG Sbjct: 125 LGNHNQKNTRLRELLEDFEPLDLRPSAIEPEEGKVAADTIGDAYEYMIGEFARQAGKKAG 184 Query: 148 QYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQ 207 +FTP + + I ++ P+ + + DP G+ LI + + N G+ + Sbjct: 185 SFFTPSEVSELIARIVNPKISDTMYDPTCGSGSLLIRTGKKAIEKEN------GNIKTL- 237 Query: 208 IHRAFIGLELVPGTRRLALMNCLLHDI-EGNLDHGGAIRLGNTLGSDGENLPKAHIVATN 266 A G E+ + +A MN LH+I + + G ++ L DG NL + ++ N Sbjct: 238 ---ALYGQEMNGSSWSMAKMNMFLHEIMDARIAWGDSLANPMHLDPDG-NLMQFDVIVAN 293 Query: 267 PPFGS---AAGTNIT-------RTF---------------VHPTSNKQLCFMQHIIETLH 301 PF AAG N + F V P S F+ H+I +L Sbjct: 294 MPFSQDKWAAGFNTGGEMTGKGKQFKMEASLDKFHRFDWGVPPASKGDWAFLLHMIASLK 353 Query: 302 PGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTK 359 GGR A V P VLF G IR+ ++++ L ++ LP +FY G+ +L F K Sbjct: 354 SGGRIAAVAPHGVLFRGASEGRIRQAVIERNLLDAVIGLPANLFYGTGIPACILVFKK 411 >UniRef50_D2MUT8 Type I restriction-modification system, M subunit n=1 Tax=Campylobacter jejuni subsp. jejuni 1336 RepID=D2MUT8_CAMJE Length = 242 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 64/194 (32%), Positives = 96/194 (49%), Gaps = 26/194 (13%) Query: 224 LALMNCLLHDIEGNLDHGGAIRLGNTLG---SDGENLPKAHIVATNPPFGSAAGTNITRT 280 + +MN +LH+I I NTL +D K ++ NPPFG I Sbjct: 1 MGVMNMILHEI-----SSPNIIKTNTLSKKITDITEQEKYEVILVNPPFGGKEKEQIQEN 55 Query: 281 FVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKG-TDIRRDLMDKCHLHTILR 339 F ++ +L F+QHI+ +L GR A++VP+ VLF+ +++DL+D +L +L Sbjct: 56 FPIKSNATELLFLQHILRSLKNNGRCAIIVPEGVLFQNSNAFVSVKKDLLDDFNLECVLS 115 Query: 340 LPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCT---DDVWVYDLRTNMPSFG--KRTPF 393 LP+G+F VKTNVLFF+KG K C D V+ Y+L +P + K P Sbjct: 116 LPSGVFLPYSAVKTNVLFFSKG--------KKCICEGDGVYYYEL---IPPYKLTKNKPL 164 Query: 394 TDEHLQPFERVYGE 407 H + F + Y E Sbjct: 165 EYTHFKEFLKCYKE 178 >UniRef50_A8ZYK3 N-6 DNA methylase n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZYK3_DESOH Length = 680 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 88/336 (26%), Positives = 139/336 (41%), Gaps = 81/336 (24%) Query: 100 PKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSG--AGQYFTPRPLIK 157 P+ ++ L++ +D++D N S D GD YE L+++ A+E ++G AGQ++TP+ ++ Sbjct: 137 PEVLSPLINYLDAVDLSN--RNASVDILGDAYEYLIKRFADENRNGTTAGQFYTPQEVVD 194 Query: 158 TIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLEL 217 I+ LKPQ + DP G+ GFLI A +Y+K T Q + G E Sbjct: 195 IIVRYLKPQKGSTLYDPTCGSGGFLINAAKYIKKTTGT-----------QKNIRLFGQED 243 Query: 218 VPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGE-NLPKAHIVATNPPFGS----- 271 V T +A +N +LH ++ + G ++ D + + +V N PF Sbjct: 244 VWNTWAIANINMILHGLDAAIKKGDTLKDPKFTEEDNDLTIKTFDLVMANFPFSQENWWK 303 Query: 272 -------AAGTNITRT-----------------------FVHPTSNKQLCFMQHIIETLH 301 G IT + P SN F+QHI+ +++ Sbjct: 304 NGEPKRDKKGKPITNKDGSPQLNYPGKEDFNDPYERFDYGIPPFSNGDFAFLQHIVASMN 363 Query: 302 PGGRAAVVVPDNVLFEGG------------KGTD---IRRDLM------DKCHLH----- 335 G+A VV P VLF G K D IRR + D +H Sbjct: 364 ESGKAGVVCPQGVLFRGQPQKTEEEDGQNRKADDEYLIRRGFLQGPVNKDGEFVHAINII 423 Query: 336 -TILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKN 370 I+ LP +FY + ++L F K P + KN Sbjct: 424 DAIVVLPGNLFYGTTIPGSILLFNKN---KPEERKN 456 >UniRef50_D0LVD7 Site-specific DNA-methyltransferase (Adenine-specific) n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LVD7_HALO1 Length = 860 Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 86/288 (29%), Positives = 132/288 (45%), Gaps = 45/288 (15%) Query: 101 KQITALVSNMDSLDWYNGAHG-KSRD-DFGDM----YEGLLQKNANETKSGAGQYFTPRP 154 K++ ALV++ G H ++RD +F DM YE L+ + A+ G+++TPRP Sbjct: 156 KRLRALVAHF-------GRHRLRNRDFEFSDMLGAAYEYLIGEFADSAGKKGGEFYTPRP 208 Query: 155 LIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIG 214 +++ I+ L P+P V DP +G+ G LI A +YV+ D L G Sbjct: 209 VVRLIVRLSDPRPGMRVYDPCSGSGGMLILARQYVQEHGGDAGSL-----------GLYG 257 Query: 215 LELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTL-------GSDGENLPKAHIVATNP 267 E G ++ MN LLH + + D IR G+TL + GE L I+ TNP Sbjct: 258 QEDNGGVWTISQMNMLLHGVS-DAD----IRNGDTLHEPLHIDPASGELLRFDRII-TNP 311 Query: 268 PFGSAAGTNIT------RTFVHPTSNKQLCFM--QHIIETLHPGGRAAVVVPDNVLFEGG 319 PF + R + P + K+ +M QH++ L PGG A V+P VLF GG Sbjct: 312 PFAQNYSPDELPLPERFRFGMCPHAGKKADWMYAQHMLAALAPGGMAVTVMPHGVLFRGG 371 Query: 320 KGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQ 367 IR +++ + ++ LP +FY + VL P + Sbjct: 372 VEQAIRSRVLEADLVEAVIGLPPNLFYGTSIPACVLVLRAPEAKPPER 419 >UniRef50_B9M294 N-6 DNA methylase n=2 Tax=Proteobacteria RepID=B9M294_GEOSF Length = 818 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 95/327 (29%), Positives = 151/327 (46%), Gaps = 54/327 (16%) Query: 101 KQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTII 160 K ++ + +D L G ++D GD +E LL + A K+G Q+ TPR LI+ ++ Sbjct: 123 KVLSDAIDAVDQLFARAGEGSAAQDIMGDTFEYLLSEVATAGKNG--QFRTPRHLIRFMV 180 Query: 161 HLLKPQPREVVQDPAAGTAGFLIEADRYV----KSQTNDLDDLDG-----------DTQD 205 LL P+P + V DPAAGT GFL +Y+ +Q N + + DG Q Sbjct: 181 ELLDPEPSQRVIDPAAGTGGFLFSTQQYLMRKYSAQENLVLEWDGTPHRTDGAAATSEQY 240 Query: 206 FQIHRA--FIGLELVPGTRRLALMNCLLHDI-EGNLDHG-------GAIRLGNTLGSDGE 255 IH F+GL+ R+ MN +LHD+ + +L G G L + S+ Sbjct: 241 AAIHHGANFVGLDNDRTMARIGWMNLILHDLTDPHLLQGDSLSKRDGKPELARLMESETY 300 Query: 256 NLPKAHIVATNPPFGSAAGTN----ITRTFVHP-----------TSNKQLCFMQHIIETL 300 + V NPPF +N ++ F T+ +L F+ +++ L Sbjct: 301 DF-----VLANPPFTGTVDSNDLEKDSKIFPRAAERGKKKEDAITNKSELLFLWLMLDLL 355 Query: 301 HPGGRAAVVVPDNVLFEGGKG-TDIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFT 358 GGR AV++P+ VLF +RR+L+ + + ++ LP G+F GVKT++L F Sbjct: 356 QVGGRCAVIIPEGVLFGNTDAHVRLRRELLTEHVVEGVISLPGGVFQPYTGVKTSILIFR 415 Query: 359 KGTVANPNQDKNC-----TDDVWVYDL 380 K T + Q T+ VW Y++ Sbjct: 416 KETRRDDKQTFTGTTAPRTEYVWFYEV 442 >UniRef50_C0QQY6 Type I restriction enzyme M protein (HsdM) n=1 Tax=Persephonella marina EX-H1 RepID=C0QQY6_PERMH Length = 898 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 98/389 (25%), Positives = 168/389 (43%), Gaps = 60/389 (15%) Query: 6 LVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEY------LPEGYRWDDL 59 L LW+ + LR GG+ Y + + ++LF+K + + Y +PEG +DDL Sbjct: 8 LYNHLWEAANALR-GGMDASQYKDYVLTILFVKYVTDKYKGDPYNEDGFIVPEGGSFDDL 66 Query: 60 KSRIGQEQL-QFYRKMLVHLGEDD--KKLVQAVFHNVSTTITEPKQ----ITALVSNMDS 112 G++ + + +L L E++ K ++ V + T + K+ +T L+ ++ Sbjct: 67 IEAKGKKNIGERINIVLSKLAEENGLKGVIDIVDFDDDTKLGTGKEKVDRLTKLIGIFEN 126 Query: 113 LDWYNGAHGKSRDD--FGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQ---- 166 + N + +S D GD+YE ++K A E GQ++TP + + + ++ + Sbjct: 127 PEL-NFSRNRSDGDDILGDVYEYFMKKFATEAGKSKGQFYTPAEVSRVMAKIIGVEKATS 185 Query: 167 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLAL 226 P + DP G+ L++ D +I + G E+ +A Sbjct: 186 PDQTAYDPTCGSGSLLLKV---------------ADEAPVKI--SLYGQEIDINVANIAR 228 Query: 227 MNCLLHDIEGNLDHGGAIRLGNTLGS------DGENLPKAHIVATNPPFGSAA---GTNI 277 MN +LH G D I GNTL DG +L NPPF G N+ Sbjct: 229 MNMILH---GRPD--AEIAQGNTLSHPKFKNPDG-SLKTFDFAVANPPFSQKNWMDGVNV 282 Query: 278 TRTFVH-------PTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMD 330 H P N F+ H I++L G+ A+++P VLF G +IR++L+ Sbjct: 283 KNDQYHRFDDGVPPAKNGDYAFLLHFIKSLKSKGKGAIILPHGVLFRGNAEAEIRKNLIK 342 Query: 331 KCHLHTILRLPTGIFYAQGVKTNVLFFTK 359 K ++ I+ LP +FY G+ +L K Sbjct: 343 KGYIKGIIGLPPNLFYGTGIPAVILVIDK 371 >UniRef50_A6TVC2 N-6 DNA methylase n=4 Tax=Bacteria RepID=A6TVC2_ALKMQ Length = 897 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 102/401 (25%), Positives = 171/401 (42%), Gaps = 65/401 (16%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKE--TGQE-AEY-LPEGYRW 56 + ++L + LW+ C+ LR GGV Y + + LLF K + GQ AE+ + EG + Sbjct: 3 VKKSELYSLLWEACNKLR-GGVEPSRYKDYVLVLLFFKYVSDRYKGQRFAEFTVNEGASF 61 Query: 57 DDL-----KSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTT----ITEPKQITALV 107 +DL KS +G+ + +K L ++ +Q +VS + K++ V Sbjct: 62 EDLIAAKGKSDVGERVDKIIQKFL------EENRLQGSLPDVSFNNPDELGSGKELVDKV 115 Query: 108 SNMDSLDW-----YNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHL 162 S + ++ + D GD YE + K A E+ GQ++TP + + I L Sbjct: 116 SGLIAIFQNPAIDFKSNRASGDDIIGDAYEYFMMKFAQESGKSKGQFYTPSEVSRIIARL 175 Query: 163 L-------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGL 215 + + + + DPAAG+ LI A + D DG++ + G Sbjct: 176 IGIGDIKQETGKKWTLHDPAAGSGSLLIRAADEAPT------DEDGNS-----IVSIYGQ 224 Query: 216 ELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGS-----DGENLPKAHIVATNPPF- 269 E P T LA MN +LH+ G I+ NTL + D L K + NPPF Sbjct: 225 EKYPDTAGLAKMNFILHN-----KGTGEIKSANTLANPAYKDDFGGLRKFDFIVMNPPFS 279 Query: 270 ------GSAAGTNITRTF----VHPTSNKQLCFMQHIIETLHPG-GRAAVVVPDNVLFEG 318 G + + F + P N + H+++ L G+A +++P VL Sbjct: 280 DKDWTDGIKPSEDKFKRFDGYGIPPEKNGDYAWFLHVLKALDSQRGKAGIILPHGVLSRP 339 Query: 319 GKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTK 359 IR+ ++DK ++ I+ LP +FY G+ ++ K Sbjct: 340 NAEETIRKAVLDKRYIKGIVGLPANLFYGTGIPACIIIIDK 380 >UniRef50_C7TL46 Type I restriction-modification system, M subunit n=17 Tax=Bacteria RepID=C7TL46_LACRL Length = 549 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 92/379 (24%), Positives = 158/379 (41%), Gaps = 59/379 (15%) Query: 94 STTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153 S+T K + +V +D + YN G RD GD+YE L+ + A + AG+++TP Sbjct: 154 SSTTARAKALNGVVRLVDQFE-YNDKQG--RDILGDVYEYLIAQFAGNSGKKAGEFYTPH 210 Query: 154 PLIKTIIHLL-----KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQI 208 + K + L+ K Q V DP G+ L+ D+L + Sbjct: 211 QVSKVLAKLVALGVQKDQEIFTVYDPTMGSGSLLLTV----------RDELPATVKAVMF 260 Query: 209 HRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSD-------GENLPKAH 261 H G EL T LA MN ++H++ ++R +TL D G + P++ Sbjct: 261 H----GQELNTTTFNLARMNLMMHNVPYT---NMSLRNADTLEDDWPDGVVGGVDSPRSF 313 Query: 262 -IVATNPPFGSAAGTNITRT---------FVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 311 V NPP+ + + + P S F++H + L+ G A+V+P Sbjct: 314 DAVVANPPYSIHWDNSENKLKDPRFKPFGALAPKSKADFAFVEHGLYHLNDTGTMAIVLP 373 Query: 312 DNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNC 371 VLF G IR+ +++K +L ++ +P G+F++ G+ T VL F K Sbjct: 374 HGVLFRGAAEGKIRKAIIEKNYLDAVIGMPAGLFFSTGIPTVVLVFKKN---------RT 424 Query: 372 TDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTE-GEWSFNAEETEVA 430 D++ D N + D + Y S R + +++ AE E+ Sbjct: 425 NRDIFFIDASNNFEKGKNQNILRDSDIDKIIEAY-------SKREDVDKYAHKAELDEIV 477 Query: 431 DSEENKNTDQHLATSRWRK 449 ++E N N +++ T+ K Sbjct: 478 ENEYNLNIPRYVDTTEPEK 496 >UniRef50_C7BP30 Type I restriction enzyme, modification subunit n=3 Tax=Bacteria RepID=C7BP30_PHOAA Length = 721 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 77/250 (30%), Positives = 111/250 (44%), Gaps = 33/250 (13%) Query: 125 DDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREV--VQDPAAGTAGFL 182 D FGD YE L+ A G++FTP+ + K I L V + DPAAG+ L Sbjct: 173 DLFGDAYEFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTHVNKIYDPAAGSGSLL 232 Query: 183 IEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGG 242 ++A ++ + I F G E+ T LA MN LH+I N D Sbjct: 233 LQAKKHFDNHI--------------IEEGFFGQEINHTTFNLARMNMFLHNI--NYDKFD 276 Query: 243 AIRLGNTLGSD--GENLPKAHIVATNPPF-----GSAAGTNIT------RTFVHPTSNKQ 289 IRLGNTL G+ P IV +NPP+ GS T I + P S Sbjct: 277 -IRLGNTLTEPHFGDEKPFDAIV-SNPPYSVKWIGSDDPTLINDERFAPAGVLAPKSKAD 334 Query: 290 LCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQG 349 F+ H + L GRAA+V + + GG IR+ L+D ++ T++ L +F+ Sbjct: 335 FAFVLHALNYLSAKGRAAIVCFPGIFYRGGAEQKIRQYLVDNNYVETVISLAPNLFFGTT 394 Query: 350 VKTNVLFFTK 359 + N+L +K Sbjct: 395 IAVNILVLSK 404 >UniRef50_Q3ADV1 Type I restriction-modification system, M subunit n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ADV1_CARHZ Length = 814 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/244 (29%), Positives = 114/244 (46%), Gaps = 22/244 (9%) Query: 125 DDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIE 184 D G YE LL++ A+ G+++TP + K ++ L+KP V DP G+ GFLIE Sbjct: 164 DLLGAAYEYLLKEFADSAGKKGGEFYTPAGVKKLMVRLVKPGENMTVYDPTVGSGGFLIE 223 Query: 185 ADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI-EGNLDHGGA 243 A YV+ + D +L G EL T + MN +LH I + ++++ Sbjct: 224 AFHYVEEKGQDRYNL-----------GLYGQELNGLTWSICKMNMILHGISDAHIENEDV 272 Query: 244 IRLGNTLGSDGENLPKAHIVATNPPFG---SAAGTNITRTFVH---PTSNKQ--LCFMQH 295 L + + + + V NPPF + A F + P + K+ L F+QH Sbjct: 273 --LTTPMFLENGYIKRFDRVLANPPFSENYTRANMQYPERFKYGFTPETGKKADLMFLQH 330 Query: 296 IIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVL 355 +I +L G A V+P VLF GG+ IR ++ + + I+ LP +FY G+ ++ Sbjct: 331 MIASLKDDGIMATVMPHGVLFRGGQEKVIREGIVKEGIIEAIIGLPPKLFYNTGIPACII 390 Query: 356 FFTK 359 K Sbjct: 391 VINK 394 >UniRef50_Q5YY36 Putative restriction-modification system endonuclease/methyltransferase n=1 Tax=Nocardia farcinica RepID=Q5YY36_NOCFA Length = 966 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 94/319 (29%), Positives = 139/319 (43%), Gaps = 46/319 (14%) Query: 92 NVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFT 151 +V TI P + +V D N A + D+YE LL K A + GA + T Sbjct: 113 DVRFTIPTPGLLAKVV------DVLNEALSTGDAEAADLYEHLLAKVATAGRFGA--FRT 164 Query: 152 PRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLD-----DLDGDTQDF 206 P L ++ + P P + V DP GT G L A +++ + + ++ G F Sbjct: 165 PLHLTALMVAMTAPGPDDEVCDPTCGTGGLLTAAAQFMLTSRSGTAQQSKAEVSGRLHGF 224 Query: 207 QIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA-IRLGNTLGSD-GENLPKAHIVA 264 R + RL+ M LH +G A +R + L + G + +V Sbjct: 225 DFDRTML---------RLSSMRLALHG------YGAADLRHRDNLSVEAGTEFERYSVVL 269 Query: 265 TNPPF-GSAAGTNITRTFVHPTSNKQLCFMQ--HIIETLHPGGRAAVVVPDNVLF-EGGK 320 NPPF GS + K+ + I+ L PGGRAAV+VPD +LF Sbjct: 270 ANPPFAGSVDYETAAPELLAAVRTKKSEILHPIAILRLLKPGGRAAVIVPDGLLFGSTAA 329 Query: 321 GTDIRRDLMDKCHLHTILRLPTGIF--YAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVY 378 ++RR L+++ L +++LP+G F YA GV T +LFFTK TD VW Y Sbjct: 330 HAELRRILVEEHGLEAVVKLPSGTFKPYA-GVSTAILFFTKYA--------GQTDYVWFY 380 Query: 379 DLRTNMPSF-GKRTPFTDE 396 DL+ + S +R P E Sbjct: 381 DLKADGWSLDDQRAPLLPE 399 >UniRef50_C8XCE4 Site-specific DNA-methyltransferase (Adenine-specific) n=3 Tax=Actinomycetales RepID=C8XCE4_NAKMY Length = 548 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 111/442 (25%), Positives = 180/442 (40%), Gaps = 86/442 (19%) Query: 10 LWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQE------AEYLPEGYRWDDLKSRI 63 LWK D LR G + Y + + L+FLK + E AE +G D + + Sbjct: 32 LWKAADKLR-GSMDASQYKDVILGLVFLKYVSDAFDERREQIRAELEADGIDEDQIDGFL 90 Query: 64 GQEQLQFYRKMLVHLGEDDKK---LVQAVFHNVSTTITEPKQITALVSN-----MDS--- 112 + + YR V D + L Q + PKQ+ L+ MD+ Sbjct: 91 --DDVDEYRGHGVFWVNRDARWSYLAQHAKGIPAVGNEPPKQVGQLIDEAMDYLMDANPS 148 Query: 113 ----------------------LDWYNGAH------GKSRDDFGDMYEGLLQKNANETKS 144 LD +N A K+RD G++YE L+K A Sbjct: 149 LRATLPRIYNRDNVDQRRLGELLDLFNSARFTGQGATKARDLLGEVYEYFLEKFAKAEGK 208 Query: 145 GAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQ 204 G+++TP +++ ++ +L+P R V DP G+ G ++ ++++++ + ++ Sbjct: 209 RGGEFYTPASVVRVLVEVLEPT-RGRVYDPCCGSGGMFVQTEKFLEAHHREGSEI----- 262 Query: 205 DFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVA 264 + G EL T R+A MN +H + GNL R G+T D +A V Sbjct: 263 ------SVYGQELNERTWRMAKMNLAIHGLSGNL----GPRWGDTFARDIHPDVQADYVL 312 Query: 265 TNPPFGSAAGTNIT-----------RTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN 313 NPPF NI + V P N ++QHII L PGG A VV+ + Sbjct: 313 ANPPF------NIKDWARNDKDPRWKFGVPPAGNANYAWIQHIISKLAPGGSAGVVMANG 366 Query: 314 VLF--EGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNC 371 + GG+G IR L++ + ++ LPT +F + G+ + FF K + Sbjct: 367 SMSTQSGGEGA-IRAQLVEADLVSCMVALPTQLFRSTGIPVCLWFFAKDKTVGTGGSVDR 425 Query: 372 TDDVWVYDLRT--NMPSFGKRT 391 + V D R+ NM +R+ Sbjct: 426 SGRVLFIDARSMGNMVDRAERS 447 >UniRef50_B7GLJ2 Type I restriction-modification system methyltransferase subunit n=4 Tax=Bacteria RepID=B7GLJ2_ANOFW Length = 515 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 77/318 (24%), Positives = 140/318 (44%), Gaps = 30/318 (9%) Query: 50 LPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSN 109 +PE W + Q ++ + E++ ++ + + P + A + Sbjct: 90 VPEEASWSYIMKNAKQPNIKEILDNAMKRLEEENPELEGILPRIYQGSNLPAENVAGLIE 149 Query: 110 MDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPRE 169 + S D ++ +S D G YE + A + G++FTP ++K ++ +L+P+ Sbjct: 150 IFSRDVFSANTHESVDILGRTYEYFISSFAASEGNRGGEFFTPSSIVKLLVAMLEPKSG- 208 Query: 170 VVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNC 229 +V DPA G+ G I+++ Y ++ +F G E V T RL MN Sbjct: 209 IVFDPACGSGGMFIQSEEYAPNKH---------------ALSFYGQENVVTTVRLGKMNV 253 Query: 230 LLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPF-----GSAAGTNITRTFVHP 284 LLH I IRLG++L +D KA + NPPF G+ + + P Sbjct: 254 LLHGI------NAEIRLGDSLLNDQFPDLKADYIIANPPFNQKDWGADRLSKNDPRLIGP 307 Query: 285 T--SNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGK-GTDIRRDLMDKCHLHTILRLP 341 SN +MQH + L+ G A V+ + + K ++R+ L+D+ ++ I++LP Sbjct: 308 VTNSNANYMWMQHFLYHLNDTGTAGFVMANGAMTTNVKEEKEVRQKLVDEGYIDCIVQLP 367 Query: 342 TGIFYAQGVKTNVLFFTK 359 +F+ G+ + F +K Sbjct: 368 EKLFFTTGIPCCLFFLSK 385 >UniRef50_D1SQT0 N-6 DNA methylase n=1 Tax=Acidovorax avenae subsp. avenae ATCC 19860 RepID=D1SQT0_9BURK Length = 483 Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 82/285 (28%), Positives = 131/285 (45%), Gaps = 35/285 (12%) Query: 80 EDDKKLVQAVFHNVS---TTITEPKQITALVSNMDSLDWYNGAHGKSRDD-----FGDMY 131 ED L+Q VFH+VS + P+Q ++S D LD + G RD+ Sbjct: 91 EDRHPLLQGVFHDVSFDSAALGNPEQRQRILS--DWLDQFGGLEFDYRDENAAESVAFAC 148 Query: 132 EGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKS 191 E L+ + A + ++FTP + + I +L+P+ E V DP G+ L+ + ++ Sbjct: 149 ETLISEVAAASGRRGAEFFTPPQVSRLIAQILQPEAGESVGDPCCGSGTLLLACSAFARA 208 Query: 192 QTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLH-DIEGNLDHGGAIRLGNTL 250 ++ + Q+ G E T LA +N L+H ++ L+ G ++ L Sbjct: 209 RSG--------YEGCQL----FGQEKNGSTWALAKINMLVHGELTAQLEWGDTLK-DPRL 255 Query: 251 GSDGENLPKAHIVATNPPF-----GSAAGTN----ITRTFVHPTSNKQLCFMQHIIETLH 301 +DG L + +V +NPPF G A N R + P F+ H++ETL Sbjct: 256 VADG-RLREFDVVVSNPPFNVKDWGQEAAANDLYGRYRRGIPPRGTADYAFLSHMVETLK 314 Query: 302 PG-GRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIF 345 PG GR AVVV VLF G IRR L+++ + ++ LPT + Sbjct: 315 PGRGRMAVVVSHGVLFRSGAELQIRRQLLEEGLVDAVIALPTKLL 359 >UniRef50_A8YVB4 Type I restriction-modification system modification subunit n=57 Tax=Firmicutes RepID=A8YVB4_LACH4 Length = 551 Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 68/254 (26%), Positives = 116/254 (45%), Gaps = 33/254 (12%) Query: 123 SRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL---KPQPREV-VQDPAAGT 178 ++D GD YE L+++ A+E+ AG+++TP+ + + + L K P E+ V DPA G+ Sbjct: 183 NKDTLGDAYEYLIKQFASESGKKAGEFYTPQEVSELLTKLTLVDKNYPEEMTVYDPAMGS 242 Query: 179 AGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNL 238 L++ +Y+K D + + G E+ T LA MN +LH ++ + Sbjct: 243 GSLLLKFKKYIKLANGQADKI-----------FYYGQEINMSTYNLARMNMILHGVDSS- 290 Query: 239 DHGGAIRLGNTLGSDGENLPKAHI--VATNPPFGSAAGTNITRTFVH-----------PT 285 +R G+TL D + K V NPP+ N + F+ P Sbjct: 291 --NQELRRGDTLDEDWPPVSKTMFDAVVMNPPYSLKWSAN--KGFLQDPRFSPYGVLPPK 346 Query: 286 SNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIF 345 S F+ H L G A+V+P VLF G IR+ L++ + ++ LP+ +F Sbjct: 347 SKADYAFLLHGFYHLKNTGTMAIVLPHGVLFRGAAEGKIRKKLLENGSIDAVIGLPSNLF 406 Query: 346 YAQGVKTNVLFFTK 359 Y+ + T ++ K Sbjct: 407 YSTSIPTVIVVLKK 420 >UniRef50_D1VRI9 PutatIve type i restriction enzyme hindviip m protein n=2 Tax=Firmicutes RepID=D1VRI9_9FIRM Length = 510 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 63/245 (25%), Positives = 117/245 (47%), Gaps = 23/245 (9%) Query: 123 SRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFL 182 S+D G YE + + A + G+++TP ++KTI+ +LKP V DP G+ G Sbjct: 150 SKDLLGRTYEYCIAQFAAYEGTKGGEFYTPSSIVKTIVAILKPFNNCRVYDPCCGSGGMF 209 Query: 183 IEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGG 242 ++++++V++ +++ ++ + G E T ++A MN + I+ N Sbjct: 210 VQSEKFVQAHSDNRGNI-----------SVYGQESNADTWKMAKMNMAIRGIDANFGSYH 258 Query: 243 AIRLGNTLGSDGENLPKAHIVATNPPFG-SAAGTNITRTFVH------PTSNKQLCFMQH 295 A +T +D K+ + NPPF S G + + V P+ N ++QH Sbjct: 259 A----DTFFNDIHKTLKSDFIMANPPFNLSNWGADKLKDDVRWKYGTPPSGNANYAWIQH 314 Query: 296 IIETLHPGGRAAVVVPDNVLFEGGKGT-DIRRDLMDKCHLHTILRLPTGIFYAQGVKTNV 354 +I L P G+ +V+ + L G +IRR +++ + I+ LPT +FY+ + + Sbjct: 315 MIHHLAPNGKIGLVLANGALSSQSSGEGEIRRKIIEDDLIEGIVALPTQLFYSVTIPVTL 374 Query: 355 LFFTK 359 F TK Sbjct: 375 WFITK 379 >UniRef50_UPI000190F6C8 DNA methylase M, host modification n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi str. E98-2068 RepID=UPI000190F6C8 Length = 75 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 50/55 (90%), Positives = 51/55 (92%) Query: 474 IDADSLPEPDVLAAEAMGELVQALSELDALMRELGASDEADLQRQLLEEAFGGVK 528 IDADSLPEPDVLAAEAMGELVQAL ELDALMRELGA DEAD QRQLLEEAFGG + Sbjct: 1 IDADSLPEPDVLAAEAMGELVQALGELDALMRELGAGDEADAQRQLLEEAFGGRR 55 >UniRef50_UPI0001C37526 type I restriction-modification system methyltransferase subunit like protein n=2 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37526 Length = 523 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 90/389 (23%), Positives = 152/389 (39%), Gaps = 56/389 (14%) Query: 10 LWKLCDNLRDGGVSYQNYVNELASLLFLKMCKE------------------------TGQ 45 LWK D LR G V Y + + SL FLK + T Sbjct: 17 LWKSADKLR-GSVEPAEYKHVVLSLFFLKFASDKFEAQRKMIAEKYGDKFVDNIAFYTKD 75 Query: 46 EAEYLPEGYRWDDLKSRIGQEQLQF-YRKMLVHLGEDDKKLVQAVFHNVSTTI-TEPKQI 103 YLP RW + Q+ + L + + + L A+ N + + + ++ Sbjct: 76 NVFYLPAESRWSFIMENAKQDDIALKIDTALFTIEKTNPALKGALPDNYYSRLHIDTSKL 135 Query: 104 TALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL 163 +L+ +D ++ D G +YE L K A G G+++TP+ ++ I L+ Sbjct: 136 ASLLDEIDKIN----TDDSENDIIGRIYEYFLGKFALAEGKGKGEFYTPKCIVNLIAELI 191 Query: 164 KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRR 223 +P ++ DP G+ G +++ ++V++ + G+ + I+ G E T + Sbjct: 192 EPYDG-ILYDPCCGSGGMFVQSIKFVEAHS-------GNKKKVSIY----GQEYTNTTFK 239 Query: 224 LALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTF-- 281 LA MN + I NL A NT +D KA + NPPF Sbjct: 240 LAKMNLAIRGISANLGEMAA----NTFTNDQHKDLKADYIMANPPFNQKEWRAENELVDD 295 Query: 282 -------VHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHL 334 V PTSN ++ +I+ L G A ++ + L + G IR+ L+D + Sbjct: 296 PRWNGYEVPPTSNANYGWILNIVSKLSQNGVAGFLLANGALSDDGTELKIRKQLIDNNLV 355 Query: 335 HTILRLPTGIFYAQGVKTNVLFFTKGTVA 363 I+ LP +FY + + K A Sbjct: 356 EAIIILPRSLFYTTDISVTLWILNKNKKA 384 >UniRef50_C7NP01 N-6 DNA methylase n=2 Tax=Halobacteriaceae RepID=C7NP01_HALUD Length = 493 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 91/387 (23%), Positives = 168/387 (43%), Gaps = 49/387 (12%) Query: 4 NDLVAKLWKLCDNLRDG--GVSYQNYVNELASLLFL---------KMCKETGQE------ 46 ++L + L+K D +RD Y++++ L + K +E G E Sbjct: 6 DELDSHLFKCADIIRDAVDSTEYKDFILPLVYYKTISDNFEVQREKYVEEYGDEHANRPN 65 Query: 47 ---AEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHN--VSTTITEPK 101 Y+P+GY WDDL++ + + + L E + V+ VF V+ Sbjct: 66 IYDVPYVPDGYLWDDLRA-VNENVDEAINDAFDALREANDGEVEGVFRADYVAEDALTDD 124 Query: 102 QITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIH 161 ++T L+ ++ ++D N + D G+ Y L++ A E GQ+FTP +++ ++ Sbjct: 125 RLTRLIEHLSTIDLDNDS--VPPDMLGEAYMDLVRHFAEEEGKSGGQFFTPPHIVELMVR 182 Query: 162 LLKP-QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPG 220 LL P + + DP G+ G L+EA + + D+ GD F G E+ P Sbjct: 183 LLAPFEDGDTFHDPTVGSGGMLVEAATHYR------DEQGGDPSKL----TFTGQEINPD 232 Query: 221 TRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRT 280 +A MN +H + G ++ ++ L +GE L K V N PF + + + Sbjct: 233 IAAIAKMNLSIHGLSGRIEREDSL-LRPQFTENGE-LTKFDYVLANFPFSADWQKDELQD 290 Query: 281 FVH---------PTSNK-QLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMD 330 + P +++ F+ H+ E L+ G+AA+V+P VLF + R +++ Sbjct: 291 DTYGRFDWHEKLPRADRGDYAFIMHMAEQLNETGQAAIVIPHGVLFRKHESR-YREPMLE 349 Query: 331 KCHLHTILRLPTGIFYAQGVKTNVLFF 357 + I+ LP +F + + +L Sbjct: 350 NDLVEAIVGLPENLFQNNSIPSAILLL 376 >UniRef50_UPI000038E019 type I restriction-modification system methylation subunit n=2 Tax=Ferroplasma acidarmanus fer1 RepID=UPI000038E019 Length = 507 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 75/247 (30%), Positives = 113/247 (45%), Gaps = 27/247 (10%) Query: 125 DDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIE 184 D GD YE +L + A E K+ G+ +TPR +++ ++ +L PQP V DPA G+ G LIE Sbjct: 159 DAMGDAYEHILMRFAPE-KAKEGEVYTPREVVRLMVDILDPQPGMSVYDPACGSGGMLIE 217 Query: 185 ADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI-EGNLDHGGA 243 A +VKS+ D G E P T LA MN +LHDI E +L+ G + Sbjct: 218 AYEHVKSRMG---------VDKANRVGLYGEERSPTTYALAKMNTILHDISESHLEVGDS 268 Query: 244 IRLGNTLGSDGENLPKAHIVATNPPFGSAA-GTNITRT----------FVHPTSNKQLCF 292 + + G L V NPP+ G + + FV P + Sbjct: 269 LLYPKFKTASG--LRHFDFVLANPPWSQKGYGEDTLKQAEFKDRYAYGFV-PQRYGDWAW 325 Query: 293 MQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKT 352 ++H++ T + AV++ LF IR+ ++D+ L ++ LP IFY G Sbjct: 326 IEHMLYT--SKSKVAVIMDQGALFRSNSEKIIRQKIVDEKLLDSVTLLPEKIFYNTGAAG 383 Query: 353 NVLFFTK 359 +L F K Sbjct: 384 AILIFNK 390 >UniRef50_B8HN07 N-6 DNA methylase n=2 Tax=Bacteria RepID=B8HN07_CYAP4 Length = 540 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 104/426 (24%), Positives = 168/426 (39%), Gaps = 79/426 (18%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKM---------CKETGQEAEY--- 49 NN L KLWK D LR + Y + + L+FLK K E EY Sbjct: 11 NNESLEQKLWKAADKLRKN-IDAAEYKHIVLGLIFLKYISDAFDKLHAKLVAGEGEYAGA 69 Query: 50 ---------------LPEGYRWDDLKSRIGQEQL-QFYRKMLVHLGEDDKKLVQAVFHNV 93 +P RW L+ + Q + Q + + + ++ KL++ + V Sbjct: 70 DPEDPDEYKAENVFFVPPDARWSVLQGQAKQPTIGQKVDEAMEAIERENPKLLKGILPKV 129 Query: 94 STTITEPKQITALVSNMDSLDWYNGAHGKSRDD-------------------FGDMYEGL 134 + TAL +D + N A ++ D G +YE Sbjct: 130 YGQ--QKLDPTALGGLIDMIGSTNLAKAEAESDGQLVLETEPIAEPRRQQDLLGQVYEYF 187 Query: 135 LQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTN 194 L + A GQ++TP ++K ++ +L+P V DP G+ G ++++++V Sbjct: 188 LGQFALAEGKKGGQFYTPESVVKVLVEMLEPYKGRVF-DPCCGSGGMFVQSEKFVSHHQG 246 Query: 195 DLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGS-- 252 L+D+ + G E T +L MN + I+G+ IR N GS Sbjct: 247 RLNDI-----------SIYGQESNETTYKLCRMNLAIRGIDGS-----NIRW-NPEGSFL 289 Query: 253 -DGENLPKAHIVATNPPFG-SAAGTNITRT------FVHPTSNKQLCFMQHIIETLHPGG 304 D KA V NPPF S G ++ R V P N ++QH + L G Sbjct: 290 KDAHKDLKADFVIANPPFNDSDWGGDLLRQDGRWQYGVPPVGNANFAWVQHFLYHLALTG 349 Query: 305 RAAVVVPDNVLFEGGKGT-DIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVA 363 A V+ + L G +IR+ L+ + I+ LPT +FY G+ + F ++ Sbjct: 350 AAGFVLSNGSLSSNTSGEGEIRKALVQADLVDCIVMLPTQLFYNTGIPACLWFLSRYKNG 409 Query: 364 NPNQDK 369 N N+D+ Sbjct: 410 NKNRDR 415 >UniRef50_A1AQ49 N-6 DNA methylase n=2 Tax=Proteobacteria RepID=A1AQ49_PELPD Length = 540 Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 70/319 (21%), Positives = 138/319 (43%), Gaps = 24/319 (7%) Query: 49 YLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVS 108 ++PE RW++++++ Q + + L E + ++ + + P + Sbjct: 87 WVPEAARWENIRAQAKQPDIGKRIDDALTLIEAENPKLKGILDKRYARVQLPDGKLGELV 146 Query: 109 NMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPR 168 +M S + +RD G +YE L + A+ GQ++TP +++T++ +L P Sbjct: 147 DMVSTIGFGVTGESARDILGQVYEYFLGQFASAEGKRGGQFYTPASIVRTLVAILAPHHG 206 Query: 169 EVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMN 228 +V DP G+ G +++++++++ + D+ + G E P T RLA MN Sbjct: 207 QVY-DPCCGSGGMFVQSEKFIEAHGGRIGDV-----------SIYGQESNPTTWRLAAMN 254 Query: 229 CLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFG-------SAAGTNITRTF 281 + I+ NL A +T + +A V NPPF S G Sbjct: 255 LAIRGIDFNLGKEPA----DTFVRNQHPDLRADFVLANPPFNVSDWWHPSLEGDPRWEYG 310 Query: 282 VHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGT-DIRRDLMDKCHLHTILRL 340 P N ++QH++ L P GRA +V+ + + +IRR L++ + ++ + Sbjct: 311 TPPQGNANYAWLQHMLYHLKPTGRAGIVLANGSMSSSQNSEGEIRRALVEADKVEVMVAM 370 Query: 341 PTGIFYAQGVKTNVLFFTK 359 P +F+ + + F K Sbjct: 371 PGQLFFNTQIPACLWFLAK 389 >UniRef50_Q2FXD0 Type I restriction-modification system, M subunit n=142 Tax=Bacteria RepID=Q2FXD0_STAA8 Length = 579 Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 126/501 (25%), Positives = 201/501 (40%), Gaps = 99/501 (19%) Query: 5 DLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKE---------------TGQEAEY 49 +L KLW + ++LR G + + N + L+F + E T QEA + Sbjct: 74 ELHKKLWSIANDLR-GNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQEA-W 131 Query: 50 LPEGYRWD---DLKSRIGQ--EQLQFYRKMLVH----------------------LGEDD 82 E YR D +L ++G E + M+ LGE+ Sbjct: 132 ADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHLATAIRKVETSTLGEES 191 Query: 83 KKLVQAVFHNVSTTITE----PKQITALVSN-MDSLDWYNGAHGKSRDD-FGDMYEGLLQ 136 + +F ++ + T K+ TAL+S M +LD H D GD YE L+ Sbjct: 192 ENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEFLIG 251 Query: 137 KNANETKSGAGQYFTPRPLIKTIIHLL---KPQPREVVQDPAAGTAGFLIEADRYVKSQT 193 + A AG+++TP+ + K + ++ K + R V DP G+ L+ + Sbjct: 252 RFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKLRHVY-DPTCGSGSLLLRVGK------ 304 Query: 194 NDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSD 253 + Q++R F G E T LA MN LLHD+ IR +TL + Sbjct: 305 -----------ETQVYRYF-GQERNNTTYNLARMNMLLHDVRY---ENFEIRNDDTLENP 349 Query: 254 GENLPKAHIVATNPPFGS-----AAGTNITRTF----VHPTSNKQLCFMQHIIETLHPGG 304 V NPP+ + + N R + P S F+QH++ L G Sbjct: 350 AFLGNTFDAVIANPPYSAKWTADSKFENDERFSGYGKLAPKSKADFAFIQHMVHYLDDEG 409 Query: 305 RAAVVVPDNVLFEGGKGTDIRRDLM-DKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVA 363 AVV+P VLF G IRR L+ +K +L ++ LP IFY + T +L F K Sbjct: 410 TMAVVLPHGVLFRGAAEGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVFKKCR-- 467 Query: 364 NPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFN 423 QD D+V D + + +D ++ Y T ++S++ Sbjct: 468 --QQD----DNVLFIDASNDFEKGKNQNHLSDAQVERIIDTYKRKA------TIDKYSYS 515 Query: 424 AEETEVADSEENKNTDQHLAT 444 A E+AD++ N N +++ T Sbjct: 516 ATLQEIADNDYNLNIPRYVDT 536 >UniRef50_B8F3Y0 Type I restriction-modification system methyltransferase subunit n=26 Tax=Bacteria RepID=B8F3Y0_HAEPS Length = 562 Score = 94.7 bits (234), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 60/231 (25%), Positives = 106/231 (45%), Gaps = 24/231 (10%) Query: 123 SRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFL 182 ++D G +YE L + A GQYFTP+ ++ II +L+P + + DPA G+ GF Sbjct: 211 AKDILGHVYEYFLGQFALAEGKKGGQYFTPKSIVTLIIEMLEPY-KGRIYDPAMGSGGFF 269 Query: 183 IEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGG 242 ++ +R+++ ++ ++ + G E P T +LA MN + IE + G Sbjct: 270 VQTERFIREHQGNVSEV-----------SIFGQEFNPTTWKLAAMNMAIRGIEFDFGKGN 318 Query: 243 AIRLGNTLGSDGENLPKAHIVATNPPFG-------SAAGTNITRTFVHPTSNKQLCFMQH 295 A N D K V NPPF S A + + P N ++QH Sbjct: 319 ADTFSNPQHRD----KKMDFVMANPPFNMKDWWNESLAQDPRWQYGIPPEGNANFAWLQH 374 Query: 296 IIETLHPGGRAAVVVPDNVLFEGGKGT-DIRRDLMDKCHLHTILRLPTGIF 345 +I L P GR A+++ + + +IR++++ + ++ LP+ +F Sbjct: 375 MIYHLSPNGRMALLLANGSMSSNTNNEGEIRKNILKADLVEAMIALPSQLF 425 >UniRef50_A0Q1H9 Type I restriction-modification system DNA methylase n=6 Tax=cellular organisms RepID=A0Q1H9_CLONN Length = 705 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 77/292 (26%), Positives = 125/292 (42%), Gaps = 41/292 (14%) Query: 125 DDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIE 184 D FG +YE L K A G++FTP L++ I+++++P+ + +V DPA G+AG ++ Sbjct: 150 DVFGRIYEYFLNKFAMTGAQEGGEFFTPISLVQMIVNVIEPE-QGIVLDPACGSAGMFVQ 208 Query: 185 ADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAI 244 +++S +D F G E +LA MN +H +E G I Sbjct: 209 TGHFIQSHGASAND----------KVTFYGQEKAELNTKLARMNMAVHGLE------GKI 252 Query: 245 RLGNTLGSDG-ENLPKAHIVATNPPFGSAAGTNITRTFVHP---------------TSNK 288 GNT D E L K + V NPPF + G + + P SN Sbjct: 253 LEGNTFYEDKHELLGKCNYVMANPPF-NVDGVDSEKIKTDPRLPFGLPGVNKKSKAVSNA 311 Query: 289 QLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQ 348 ++Q+ L+ GRA V+ + G D+R L+ + I+ + FY + Sbjct: 312 NYLWIQYFYSYLNEKGRAGFVMASSATDAGHGEKDVRERLIKTNDVDVIISIGNNFFYTR 371 Query: 349 GVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKR-TPFTDEHLQ 399 + + FF K N ++DK D V + D R + F++E L+ Sbjct: 372 SLPCTLWFFDK----NKSEDK--KDKVLMIDARNIFRKVNRTINDFSEEQLK 417 >UniRef50_Q47163 Type I restriction enzyme EcoprrI M protein n=139 Tax=cellular organisms RepID=T1MP_ECOLX Length = 520 Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 74/249 (29%), Positives = 107/249 (42%), Gaps = 31/249 (12%) Query: 125 DDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREV--VQDPAAGTAGFL 182 D FGD YE L+ A G++FTP+ + K I L V + DPAAG+ L Sbjct: 175 DLFGDAYEFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTHVNKIYDPAAGSGSLL 234 Query: 183 IEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGG 242 ++A + D I F G E+ T LA MN LH+I N D Sbjct: 235 LQAKK--------------QFDDHIIEEGFFGQEINHTTYNLARMNMFLHNI--NYDKFD 278 Query: 243 AIRLGNTLGSDGENLPKAH-IVATNPPF-----GSAAGTNIT------RTFVHPTSNKQL 290 I+LGNTL K + +NPP+ GS T I + P S Sbjct: 279 -IKLGNTLTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPTLINDERFAPAGVLAPKSKADF 337 Query: 291 CFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGV 350 F+ H + L GRAA+V + + GG IR+ L+D ++ T++ L +F+ + Sbjct: 338 AFVLHALNYLSAKGRAAIVCFPGIFYRGGAEQKIRQYLVDNNYVETVISLAPNLFFGTTI 397 Query: 351 KTNVLFFTK 359 N+L +K Sbjct: 398 AVNILVLSK 406 >UniRef50_Q4A128 Putative type I restriction-modification system methyltransferase subunit n=5 Tax=Bacteria RepID=Q4A128_STAS1 Length = 518 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 124/501 (24%), Positives = 197/501 (39%), Gaps = 99/501 (19%) Query: 5 DLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQ--------------EAEYL 50 +L +LW + ++LR G + + N + L+F + E + E + Sbjct: 13 ELHKRLWSIANDLR-GNMDASEFRNYILGLIFYRFLSEKAETEVAEALSGEDLTYEEAWE 71 Query: 51 PEGYRWD---DLKSRIGQ--EQLQFYRKMLVHLGE---DDKKLVQAVFHNVSTTITEPKQ 102 E YR D +L +G E + M+ + D + LVQA+ ++T+ + + Sbjct: 72 DEEYREDLKDELIENVGYYIEPQDLFSSMVTEIENQRFDIEHLVQAIRKVETSTLGQNSE 131 Query: 103 --ITALVSNMDSLDWYNGAHGKSR-----------------------DDFGDMYEGLLQK 137 L S+MD G K R D GD YE L+ + Sbjct: 132 EDFIGLFSDMDLSSTRLGNTVKERTALISKVMVNLGDLPFVHSDMEIDMLGDAYEFLIGR 191 Query: 138 NANETKSGAGQYFTPRPLIKT---IIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTN 194 A AG+++TP+ + K I+ L K + R V DP G+ L+ R K T Sbjct: 192 FAANAGKKAGEFYTPQQVSKILAQIVTLGKDKLRNVY-DPTCGSGSLLL---RVGKETT- 246 Query: 195 DLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE-GNLDHGGAIRLGNTLGSD 253 ++R + G E T LA MN LLHD+ N D I+ +TL + Sbjct: 247 -------------VYR-YNGQERNNTTYNLARMNMLLHDVRFENFD----IQNDDTLENP 288 Query: 254 GENLPKAHIVATNPPFGSA----AGTNITRTF-----VHPTSNKQLCFMQHIIETLHPGG 304 K V NPP+ + + N F + P S F+QH++ L G Sbjct: 289 AFEGEKFDAVVANPPYSAKWSADSKFNDDERFSNYGKLAPKSKADFAFIQHMVHYLDDEG 348 Query: 305 RAAVVVPDNVLFEGGKGTDIRRDLM-DKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVA 363 AVV+P VLF G IR+ L+ +K +L ++ LP IFY + T VL F K A Sbjct: 349 TMAVVLPHGVLFRGAAEGVIRKYLIEEKNYLDAVIGLPANIFYGTSIPTCVLVFKKCREA 408 Query: 364 NPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFN 423 + DV D + TDE ++ Y + ++S+ Sbjct: 409 DQ--------DVLFIDASNEFEKGKNQNHLTDEQVEKIIATYK------NREAVDKYSYA 454 Query: 424 AEETEVADSEENKNTDQHLAT 444 A E+ +++ N N +++ T Sbjct: 455 ANLKEIDENDYNLNIPRYVDT 475 >UniRef50_Q3M7D1 N-6 DNA methylase n=5 Tax=Bacteria RepID=Q3M7D1_ANAVT Length = 694 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 100/416 (24%), Positives = 175/416 (42%), Gaps = 84/416 (20%) Query: 6 LVAKLWKLCDNLR-DGGVSYQNYVNELASLLFLKMC--------KETGQEAEYLPEGYRW 56 L A LW+ D LR + + Y + L+FLK E QE E L +G R Sbjct: 9 LEANLWQSADTLRANSDLKSSEYSTPVMGLIFLKFADNKYRQYAAEIQQEYEAL-KGTRR 67 Query: 57 DDLKSRIGQEQLQFY------RKMLVHLGEDD--KKLVQAVFHNVSTTITE--------- 99 + + I E+ FY L++L E++ K ++A ++ + E Sbjct: 68 EKAIAEIAIEKCGFYLPDHARYNYLLNLPEEEDIAKAIKAAMVSIESYKPELKDTLPQDE 127 Query: 100 -----------PKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQ 148 PKQ+ SN+ + D FG +YE L A G G+ Sbjct: 128 YFRLTRTDKGIPKQLLKNFSNI--------PENATGDMFGQIYEYFLGNFALSEGQGGGE 179 Query: 149 YFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQI 208 +FTPR +++ ++ +++P + V DPA G+ G +++ ++++ Q L+ D D + Sbjct: 180 FFTPRSVVRLMVEIIEPH-QGTVFDPACGSGGMFVQSAQFIEEQRKKLNQSAAD--DLFV 236 Query: 209 HRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDG-ENLPKAHIVATNP 267 + G E T +LA MN ++ + G+ +R NT D + K V NP Sbjct: 237 Y----GQEKTLETVKLAKMNIAVNGLRGD------VRQTNTYYEDPFGSFGKFDYVLANP 286 Query: 268 PFGSAAGTNITR--------TFVHPTS---------------NKQLCFMQHIIETLHPGG 304 PF + N++R T+ P + N ++ +L P G Sbjct: 287 PF-NVDDVNLSRVEIDARFNTYGIPRNKTKGKKQEQGNETVPNANYLWINLFATSLKPKG 345 Query: 305 RAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 360 RAA+V+ ++ DIR+ L+++ ++ +L LP+ +FY + + FF +G Sbjct: 346 RAALVMANSASDARHSEADIRQKLIEENLIYGMLTLPSNMFYTVTLPATLWFFDRG 401 >UniRef50_D1XRZ6 N-6 DNA methylase n=1 Tax=Streptomyces sp. ACTE RepID=D1XRZ6_9ACTO Length = 886 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 98/405 (24%), Positives = 167/405 (41%), Gaps = 72/405 (17%) Query: 10 LWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA-EYLPE------GYRWDDLKSR 62 L+ D LR G + Y + + LLFLK + + A E + E G+ ++L + Sbjct: 13 LFAAADILR-GTMDASEYKDYIFGLLFLKRANDEFEAARERIKEQAKRDWGFDGEELDAF 71 Query: 63 IGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEP---------KQITALVSNMD-- 111 + QE R +L + + V N++ ++ P +++T L ++D Sbjct: 72 LEQEAPYRERDVLFVPEKARWHEISGVTRNINESVLRPALQLLEGQNEKLTGLFDHLDFN 131 Query: 112 -----------------SLDWYNGAHGKSR---DDF------GDMYEGLLQKNANETKSG 145 L+ G+ R DDF G YE L+++ A+ Sbjct: 132 RIGGSGAAAGTATLADKRLELLIAHFGRVRLRTDDFEFPDLIGAAYEYLIKEFADSAGRK 191 Query: 146 AGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQD 205 G+++TPR +++ ++ LL P + DP G+ G LI A YV+ D D+ Sbjct: 192 GGEFYTPRAVVRMMVELLAPTQGMRIYDPCVGSGGMLIHAAEYVEEHGGDTSDM------ 245 Query: 206 FQIHRAFIGLELVPGTRRLALMNCLLHDIEG-NLDHGGAI-RLGNTLGSDGENLPKAHIV 263 F G + G+ ++ MN +LH + +L G + R + SD + V Sbjct: 246 -----FFAGQDANSGSWIMSTMNMVLHGVRRFDLTTGDTLARPTHIPTSDADRFDG---V 297 Query: 264 ATNPPF-----GSAAGTNITRTFVHPTSNK---QLCFMQHIIETLHPGGRAAVVV---PD 312 +NPPF + RT+ TS + L F+QH++ GR +V+ P Sbjct: 298 LSNPPFSMDYTATDLAHRTERTYYGLTSERGKADLMFLQHMLWETKKEGRGGMVITVMPH 357 Query: 313 NVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFF 357 VLF GG IR L+D+ + ++ L +FY G+ +L Sbjct: 358 GVLFRGGGEQQIRTKLLDEDAVEAVIGLAPNLFYGTGIPACILVL 402 >UniRef50_Q7X0F3 M.AhdI n=1 Tax=Aeromonas hydrophila RepID=Q7X0F3_AERHY Length = 532 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 75/255 (29%), Positives = 118/255 (46%), Gaps = 31/255 (12%) Query: 142 TKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDG 201 +SG GQYFTP+ +I II ++ P RE+V DP G+ FL A YV++ D L Sbjct: 260 VRSGMGQYFTPKEVIDFIICMMSPNVRELVVDPFCGSGHFLTSALDYVRNSHGKADKLFH 319 Query: 202 DTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAH 261 + ++H G+E R+A+ + LH D IR + L +N P + Sbjct: 320 EFAFTRLH----GIEKSDRMVRIAMTDMRLHG-----DGHSNIRCTDALLP-FDNYPDLY 369 Query: 262 -----IVATNPPFGSAAGTNITRTF--------VHPTSNKQLCFMQHIIETLHPGGRAAV 308 +V TNPPFG + F + ++ ++ ++ L PGGR A+ Sbjct: 370 RETFDLVVTNPPFGVDLPADALHQFGPFELALDRKTAISLEIVALERCLQLLKPGGRMAI 429 Query: 309 VVPDNVLFEGGKGTDIRRD-LMDKCHLHTILRLPTGIF--YAQGVKTNVLFFTKGTVANP 365 V+PD VL K T RD L++ + I+ LP F + +KT+VL K P Sbjct: 430 VIPDGVL--SNKNTQYVRDWLVEHAVIRAIVSLPIETFSPFGANIKTSVLVLRK---LRP 484 Query: 366 NQDKNCTDDVWVYDL 380 N+D + V++ ++ Sbjct: 485 NEDISKLRKVFMSEI 499 >UniRef50_B5ZAK9 Type I restriction enzyme n=13 Tax=Mycoplasmataceae RepID=B5ZAK9_UREU1 Length = 510 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 90/409 (22%), Positives = 168/409 (41%), Gaps = 78/409 (19%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA------------- 47 +N +D+ LW CD LR G +S + Y++ + ++FLK + A Sbjct: 9 INIDDIANDLWASCDELR-GNISSEQYMHIIIGIIFLKTISDKYNYAINALKDKYKDKFN 67 Query: 48 -----------EYLPEGY------RWDDLK-----SRIGQEQLQFYRKMLVHLGEDDKKL 85 E+ P G W+ + S IG++ Q + K+ E+ Sbjct: 68 DSIKNDSDLISEFFPLGLIVPDEAHWNYISGFTTDSSIGEKIDQAFLKI-----ENQNPR 122 Query: 86 VQAVFHN-VSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKS 144 ++ +F+ ++ + ++ +V + D+ + D G +YE L + + Sbjct: 123 LKGLFNKQYNSPELDKTRLGNVVRKFNDYDFSQF----NEDLVGRIYEYFLGEFFRKQGQ 178 Query: 145 GAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQ 204 G+++TP+ +++ +I +L P + DPA GT G ++A Y+ Q D + L Sbjct: 179 KGGEFYTPKTVVELLIDILDPNDNIKMYDPACGTGGMFVQARNYLHEQNKDYNKL----- 233 Query: 205 DFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVA 264 G E T +LA +N LL+ N H G +T D K I+ Sbjct: 234 ------VIYGQEYQSQTWKLAKINLLLNGFNENDIHLGRGS-EDTFKEDLHKGQKFDIIV 286 Query: 265 TNPPFGSAAGTNITRTF-------------VHPTSNKQLCFMQHIIETLHPGGRAAVVVP 311 NPPF N+ + + + P +N ++ HII L+ G+A V++ Sbjct: 287 ANPPF------NLKKWYREELLNDERFSWGMPPENNANYAWLLHIISKLNSRGKAGVILA 340 Query: 312 DNVLFEGGKGTD-IRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTK 359 + L K +R+ ++++ + I+ LP +FY + ++ FF K Sbjct: 341 NGSLSSSNKEESLLRKKMIEENIVDAIISLPDKLFYTTQISASIWFFNK 389 >UniRef50_A6TNL6 Type I restriction-modification system, M subunit n=5 Tax=Firmicutes RepID=A6TNL6_ALKMQ Length = 858 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 73/299 (24%), Positives = 125/299 (41%), Gaps = 42/299 (14%) Query: 125 DDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL-KPQPREVVQDPAAGTAGFLI 183 D GD YE L+ + A E+ AG+++TP + + + ++ K + + DP G+ L+ Sbjct: 178 DILGDAYEYLIGQFAMESGKKAGEFYTPHRVSEVMAQIVAKTTEIKSIYDPTVGSGSLLL 237 Query: 184 EADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA 243 +++ ++D Q ++ G E T L MN LLH G Sbjct: 238 TVKKHL-------------SKDRQKDLSYYGQEKNTATYNLTRMNLLLH---GVRPEKMT 281 Query: 244 IRLGNTLGSDGENLP-------KAHIVATNPPFGS----AAGTNITRTFVH------PTS 286 I+ G+TLG+D P + V NPP+ + AG ++ P S Sbjct: 282 IKNGDTLGNDWPEDPENPNEGVQFDAVVMNPPYSAQNWNKAGLKVSDPRFEIGGTLPPDS 341 Query: 287 NKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFY 346 F+ H + L G +V+P VLF G +IR+ L+DK + ++ LP+ +F Sbjct: 342 KGDYAFLLHGLYHLGTKGTMGIVLPHGVLFRGSSEGEIRKKLIDKNQIDAVIGLPSNLFT 401 Query: 347 AQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVY 405 G+ ++ K ++N +D V + D N GK+ + + VY Sbjct: 402 NTGIPVAIIILKK--------NRNISDPVLMIDASNNFIKVGKQNVLQERDIAQIVDVY 452 >UniRef50_UPI0001BC44FA type I restriction-modification system DNA methylase n=1 Tax=Fusobacterium gonidiaformans ATCC 25563 RepID=UPI0001BC44FA Length = 502 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 89/409 (21%), Positives = 173/409 (42%), Gaps = 41/409 (10%) Query: 49 YLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVS 108 ++P+ RW + + ++ + E + K ++ V + + K++ V Sbjct: 76 FVPKEARWSTISAATHTAEIGMVIDNAMRAIEAENKTLKNVLPKIYASPDLDKRVLGEVV 135 Query: 109 NMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPR 168 ++ + + +S+D G YE + + A + G+++TP ++KTI+ +LKP Sbjct: 136 DLFTNNINMEDTEESKDLLGRTYEYCIAQFAAYEGTKGGEFYTPSSIVKTIVEILKPFDN 195 Query: 169 EVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMN 228 V DP G+ G +++ +++++ + + + H + G E T ++A MN Sbjct: 196 CRVYDPCCGSGGMFVQSVKFLQAHSGNRN-----------HISVFGQESNADTWKMAKMN 244 Query: 229 CLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFG-SAAGTNITRTFVH---- 283 + I+ N A +T +D + KA + NPPF S G + + V Sbjct: 245 MAIRGIDANFGPYQA----DTFFNDLHSTLKADFIMANPPFNLSNWGQDKLQDDVRWKYG 300 Query: 284 --PTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGT-DIRRDLMDKCHLHTILRL 340 P N ++QH++ L P G+ +V+ + L G +IR+ +++ + I+ + Sbjct: 301 LPPAGNANYAWIQHMVHHLAPNGKIGLVLANGALSTQTSGEGNIRKAIIEDDLIEGIVAM 360 Query: 341 PTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRT--PFTDEHL 398 PT +FY+ + + F +K +K D R NM R FT+E + Sbjct: 361 PTQLFYSVTIPVTLWFISK--------NKKQKGKTLFIDAR-NMGFMVDRKHRDFTEEDI 411 Query: 399 QPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRW 447 Q + G+ E E F A V ++EE + D L R+ Sbjct: 412 QKLANTFTHFQEGI---LEDEKGFCA----VVETEEIRKQDYILTPGRY 453 >UniRef50_C5S255 Type I restriction-modification system n=2 Tax=Actinobacillus minor RepID=C5S255_9PAST Length = 840 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 102/417 (24%), Positives = 167/417 (40%), Gaps = 78/417 (18%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLK 60 MN L A LW ++LR G + Y N + LF K E QE + +++L Sbjct: 1 MNKQQLAATLWASANDLR-GKMDASEYKNYILGFLFYKFLSE-HQENYLVQNEVSFEELD 58 Query: 61 SR------------IGQEQLQFYRKMLVHLGEDDKKL---------------------VQ 87 S I QE L YR +V++ E+ KL + Sbjct: 59 SDSIETIKEDLGYFIAQEDL--YRTWIVNISENKWKLSHVTDAINHFNENLYDSQKDDFE 116 Query: 88 AVFHNVSTTITE-----PKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANET 142 VF +++ T + + +A+ ++ L+ D FG +YE L+ + A + Sbjct: 117 GVFSDLNLTSEKLGKNLSDKESAVKKLIELLNGIKITDNSEYDVFGYIYEYLIAQFAMAS 176 Query: 143 KSGAGQYFTPRPLIKTIIHLLKPQPRE----VVQDPAAGTAGFLIEADRYVKSQTNDLDD 198 AG+++TP + + + ++ + R+ V DP AG+ L+ V ++ D+ Sbjct: 177 GKKAGEFYTPHQVSRIMAEIVADELRQKEQCAVYDPTAGSGSLLLTVSEAV-NRNEHRDN 235 Query: 199 LDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE-GNLDHGGAIRLGNTLGSD---- 253 + F G E T +A MN L+ ++ N+ +R +TL SD Sbjct: 236 IQ-----------FFGQEENNTTYNIARMNLLMRGVKPANM----ILRNADTLKSDWPYG 280 Query: 254 ---GENLPK-AHIVATNPPFGSAAGTNITRTFVH-------PTSNKQLCFMQHIIETLHP 302 GE+ P V NPP+ + T V P + F+ H + L Sbjct: 281 EINGEDTPLFVDCVVANPPYSAKWDTERADKDVRFKEYGTAPATKADYAFLLHSLYHLKS 340 Query: 303 GGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTK 359 G A+V+P VLF G + IR L+ + + I+ LP GIF G+ T V+ K Sbjct: 341 DGIMAIVLPHGVLFRGNEEEKIRTKLLQRRQIDAIIGLPAGIFTNTGIPTIVMILRK 397 >UniRef50_B4A465 N-6 DNA Methylase family protein n=3 Tax=Salmonella enterica RepID=B4A465_SALNE Length = 417 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 65/258 (25%), Positives = 121/258 (46%), Gaps = 45/258 (17%) Query: 129 DMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRY 188 D++ L+++N T+ +++TP ++ + ++++ Q E DPA G+ F+ E Sbjct: 117 DLFTSLIEENRPPTQ----KHYTPHEIVTFMGNIIQAQKGESFFDPACGSGEFISEI--- 169 Query: 189 VKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGN 248 +K+Q A G E +++ M L++D+ + + Sbjct: 170 IKNQV-----------------AISGSEYDVDRLKISKMKMLVNDLSPS-------NISP 205 Query: 249 TLGSDGENLPKAH-IVATNPPFGSAAGTNITRTFVH----PTSNKQLCFMQHIIETLHPG 303 + ++G NL K I+ +NPPF ++ F P SN F+Q+ I L Sbjct: 206 SYFTEGHNLKKNFDIILSNPPFSLKIPFDMEMHFCMYGKPPASNADFAFLQYCIFMLKDN 265 Query: 304 GRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVA 363 GRAA+++PD +LF GK +IR+ ++ H+ I+ LP G+F + TN++ F K Sbjct: 266 GRAAIILPDGILFREGKEYEIRKKIIKNNHISAIIYLPKGMFKTTAIATNIIVFKK---- 321 Query: 364 NPNQDKNCTDDVWVYDLR 381 K T+D+ + ++R Sbjct: 322 -----KQKTNDILMINVR 334 >UniRef50_C3JA79 Type I restriction-modification system, M subunit n=2 Tax=Bacteria RepID=C3JA79_9PORP Length = 823 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 94/399 (23%), Positives = 166/399 (41%), Gaps = 71/399 (17%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEY---LPEGYRWD 57 + + L LW+ C+ LR G + Y + + +LF+K + + + +PEG + Sbjct: 3 IKKSQLYRTLWESCNALR-GSMDASQYKDYVLIILFVKYLSDKAGQPGFRLNIPEGCSFR 61 Query: 58 DLKS-----RIGQE---QLQFYRKMLV-HLGE-------DDKKLVQAVFHNVSTTITEPK 101 D S +IG+ +L+ ++M +G+ D KL + T+ E Sbjct: 62 DFVSLKQNDKIGELMNIKLEAIKEMNARQIGDLALPNFNDPAKL------GIGRTMVETL 115 Query: 102 QITALVSNMDSLDWYNGAHGKSRDD--FGDMYEGLLQKNANETKSGAGQYFTPRPLIKTI 159 V D+LD+ + ++ DD GD YE L++ A E+ GQ++TP + + + Sbjct: 116 SRLIGVFENDALDF---SRNRAADDDLLGDAYEYLMKNFAAESGRRKGQFYTPAEVSRVM 172 Query: 160 IHLLKPQP----REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGL 215 +L+ + + DP G+ L+ R + +N + G +D Sbjct: 173 AKVLRIHELDRGEQTIYDPTCGSGSLLL---RALAEASNPRVSICGQEKD---------- 219 Query: 216 ELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGEN----LPKAHIVATNPPFGS 271 T LA MN LLH I + I++G+TLG L + NPPF Sbjct: 220 ---GTTAALAKMNMLLHGISNS-----EIKVGDTLGDPQFKQMGILSTFDVCVANPPFSE 271 Query: 272 A----------AGTNITRTFVHPTSNKQLCFMQHIIETLHPG-GRAAVVVPDNVLFEGGK 320 T+ + P F+ H+I ++ GR A ++P VLF G Sbjct: 272 KEWFSPALEKDTYERWTKELLPPAKCGDYAFLMHLIASMKSEEGRGACILPHGVLFRGNA 331 Query: 321 GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTK 359 IR+D++ K ++ I+ LP +F+ G+ +++ K Sbjct: 332 EYTIRKDIIRKRYIKGIIGLPANLFFGTGIPASIIVIDK 370 >UniRef50_B1VHI4 Type I restriction-modification system, methyltransferase subunit n=4 Tax=Bacteria RepID=B1VHI4_CORU7 Length = 865 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 88/424 (20%), Positives = 171/424 (40%), Gaps = 83/424 (19%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQ--------EAEYLPE 52 MN +L +++W+ +N+R + Y + + +F K + + E E LP+ Sbjct: 1 MNKQELASRIWESANNMR-SKIEANEYKDYILGFIFYKFLSDQVEQFMLDNDAEPEDLPD 59 Query: 53 -----------------GY-------------RWDDLKSRIGQEQLQFYRKMLVHLGEDD 82 GY + +D +E L +++ ++ + Sbjct: 60 ALVETDTDTVALVRNNLGYFLTYENLYSTWRDKGNDFSIAHVREGLATFKR---NIAPER 116 Query: 83 KKLVQAVFHNVSTTI-----TEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQK 137 K + + + + T++ T+ + A+ +D +D + D G +YE L++K Sbjct: 117 KHVFDGILNTLDTSLSKLGTTDAARTAAIKKLLDLIDDIPTDGKQGYDVLGYIYEYLIEK 176 Query: 138 NANETKSGAGQYFTPRPLIKTIIHL----LKPQPREVVQDPAAGTAGFLIEADRYVKSQT 193 A AG+++TP + + ++ LK + + DP +G+ L+ + V + Sbjct: 177 FAANAGKKAGEFYTPHEVSLVMSNIVADHLKGRDEIQIYDPTSGSGSLLLNIGQAVAKRM 236 Query: 194 NDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSD 253 D D + + EL T L MN ++ ++ + R G++L D Sbjct: 237 GDPDRI-----------KYFAQELRENTYNLTRMNLVMRGVKAD---NIVARNGDSLAHD 282 Query: 254 ----GENLP-------KAHIVATNPPF-------GSAAGTNITRTFVHPTSNKQLCFMQH 295 E+ P V +NPP+ G+ A R + P + F+ H Sbjct: 283 WPMFDESDPVQTYQPLYVDAVVSNPPYSQKWEPEGNGADPRFARFALAPKTKADYAFLLH 342 Query: 296 IIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVL 355 + + P G +V+P VLF GG DIRR+L++ H+ ++ LP+ IFY G+ T ++ Sbjct: 343 ELFHVKPDGILTIVLPHGVLFRGGSEADIRRNLIEANHIDAVIGLPSNIFYGTGIATIIM 402 Query: 356 FFTK 359 + Sbjct: 403 VLKQ 406 >UniRef50_Q12V00 N-6 DNA methylase n=24 Tax=cellular organisms RepID=Q12V00_METBU Length = 554 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 72/272 (26%), Positives = 118/272 (43%), Gaps = 40/272 (14%) Query: 103 ITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHL 162 I+ ++S++D +D+ D GD YE L+ + A+ AG+++TP+ + + L Sbjct: 194 ISKVLSHLDKIDF--QLEHTELDVLGDAYEYLIGQFASGAGKKAGEFYTPQQVSTILAKL 251 Query: 163 LKPQPREV--VQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPG 220 + + + V DP G+ L+ R V+ + AF G EL Sbjct: 252 VTTGKKRLRSVYDPTCGSGSLLLRVAREVEDVS-----------------AFYGQELNRT 294 Query: 221 TRRLALMNCLLHDI---EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNI 277 T LA MN +LH++ + ++ + LG E + NPPF + N Sbjct: 295 TYNLARMNMILHNVHYRKFDIKQEDTLEYPQHLGMQFE------AIVANPPFSAQWSANP 348 Query: 278 TRTF---------VHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDL 328 + + P S F+QH+I L G A+V+P VLF G IR+ L Sbjct: 349 LFSSDERFSQYGKLAPKSKADYAFVQHMIHHLAENGSMAIVLPHGVLFRGAAEGHIRQFL 408 Query: 329 M-DKCHLHTILRLPTGIFYAQGVKTNVLFFTK 359 + +K +L ++ LP +FY + T VL F K Sbjct: 409 IEEKNYLDAVIGLPANVFYGTSIPTCVLVFKK 440 >UniRef50_A1U632 N-6 DNA methylase n=17 Tax=cellular organisms RepID=A1U632_MARAV Length = 570 Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 65/245 (26%), Positives = 111/245 (45%), Gaps = 16/245 (6%) Query: 123 SRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFL 182 S+D G +YE L + A GQY+TP+ ++ I+ +L+P V DPA G+ GF Sbjct: 199 SKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEMLQPYSGRVY-DPAMGSGGFF 257 Query: 183 IEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGG 242 + +D++++ ++ G+ + H + G E P T RLA MN + I+ N Sbjct: 258 VSSDKFIEEHASEQHYDAGEQKK---HISVYGQESNPTTWRLAAMNMAIRGIDFNFGKKN 314 Query: 243 AIRLGNTLGSDGENLPKAHIVATNPPFG-------SAAGTNITRTFVHPTSNKQLCFMQH 295 A +T D +A V NPPF S A + P N +MQH Sbjct: 315 A----DTFLDDQHPDLRADFVMANPPFNIKDWWSESLADDVRWKYGTPPKGNANFGWMQH 370 Query: 296 IIETLHPGGRAAVVVPDNVLFEGGKGT-DIRRDLMDKCHLHTILRLPTGIFYAQGVKTNV 354 ++ L P G A+++ + + +IR+ L+++ + ++ LP +F + + Sbjct: 371 MLHHLAPTGSMALLLANGSMSSNTNNEGEIRKRLVEEDLVECMVALPGQLFTNTQIPACI 430 Query: 355 LFFTK 359 F TK Sbjct: 431 WFLTK 435 >UniRef50_Q11PS3 Type I restriction-modification system, M subunit n=5 Tax=Bacteria RepID=Q11PS3_CYTH3 Length = 528 Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 96/419 (22%), Positives = 170/419 (40%), Gaps = 66/419 (15%) Query: 52 EGYRWDDLKSRIGQEQLQFYRKMLVH-----LGEDDKKLVQAVFHNVSTTITEPKQ---- 102 EG +D+ K+ E LQ K+L++ +G D ++ +F ++ T+ + Sbjct: 109 EGENFDEAKTNFILEDLQ---KILINIQLSTMGTDSEEDFDNLFEDMDLNSTKLGKTPDA 165 Query: 103 ----ITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKT 158 I +++++D +D+ D GD YE L+ + A+ AG+++TP+ + K Sbjct: 166 RNAIIAKVLTHLDKIDF--KLEDLESDVLGDSYEYLIGQFASGAGKKAGEFYTPQQVSKI 223 Query: 159 IIHLLKPQPREV--VQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLE 216 + ++ + ++ V DP G+ L+ R VK F G E Sbjct: 224 LAKIVTTEKHKLKSVYDPTCGSGSLLLRVAREVKDVAK-----------------FYGQE 266 Query: 217 LVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTN 276 + T LA MN +LH + I+ +TL + + NPPF + N Sbjct: 267 MNRTTYNLARMNMILHGVHY---RKFDIKQEDTLEHPQHMGQQFEAIVANPPFSAQWSAN 323 Query: 277 ITRTF---------VHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRD 327 + P S F+QH++ L G A+V+P VLF GG IR+ Sbjct: 324 PLHLSDDRFSQYGKLAPASKADYAFVQHMVHHLAENGIMALVLPHGVLFRGGAEQHIRKY 383 Query: 328 LMD-KCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPS 386 L++ K +L ++ LP IFY + T +L K + D++ D Sbjct: 384 LIEQKNYLDAVIGLPGNIFYGTSIPTCILVIKKC--------REMPDNILFIDASKEFEK 435 Query: 387 FGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGE-WSFNAEETEVADSEENKNTDQHLAT 444 + ++H+ Y R E E +S A E+A+++ N N +++ T Sbjct: 436 VKTQNILREKHIDKIVDTY-------RSRKEIEKYSHCASLKEIAENDFNLNIPRYVDT 487 >UniRef50_UPI0001B4AB1B type I restriction-modification system methylation subunit n=1 Tax=Bacteroides fragilis 3_1_12 RepID=UPI0001B4AB1B Length = 512 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 94/399 (23%), Positives = 168/399 (42%), Gaps = 71/399 (17%) Query: 10 LWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQE----------AEY---------- 49 LW +LR G + Y + LLF K + E EY Sbjct: 24 LWAAATHLR-GQIDAAGYKEYIFPLLFFKRISDVYDEQFEGFVCEGGVEYAGKQVEDLPI 82 Query: 50 -LPEGYRWDDLK------------SRIGQEQLQFYRKMLVHLGEDDKKL--VQAVFHNVS 94 +PEG W D++ + I EQ ++M D +K+ ++ +F Sbjct: 83 RIPEGAHWRDVREVTENVGNKLVEAFIAIEQANPAKEM------DGRKIGGLEGIFGPKD 136 Query: 95 TTITEPKQITALVSNM--DSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTP 152 + K ++++++ D + D+ G YE L+ K A++ + A +++T Sbjct: 137 GWTNKAKMPDSIITSLIEDFSKYTLSLKACPADEMGQAYEYLVGKFADDAGNTAQEFYTN 196 Query: 153 RPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAF 212 R +++ + +L+PQP E + DP G+ G L++ Y++++ ++ Q Q+ Sbjct: 197 RTVVQLMAEILQPQPNESIYDPTCGSGGMLVKCLDYLRNKGDEW-------QSVQV---- 245 Query: 213 IGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSA 272 G E+ T +A MN L+ +E + A L + DG +L K IV NPP+ Sbjct: 246 FGQEVNGLTSSIARMNLYLNGVE-DFSIVCADTLEHPAFLDGSHLRKFDIVLANPPYSIK 304 Query: 273 A-----------GTNITRTFVHPTSNKQLCFMQHIIETLH-PGGRAAVVVPDNVLFEGGK 320 G N T P F+QHI+ +++ GR A+++P +LF + Sbjct: 305 EWNREKFMNDKWGRNFLGT--PPQGRADYAFIQHILASMNEKNGRCAILLPHGILFR-QE 361 Query: 321 GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTK 359 DIR+ L+ L ++ L +FY ++ +LF K Sbjct: 362 EKDIRKSLVLSDSLEAVIGLGPNLFYNSPMEACILFCNK 400 >UniRef50_A8L1U0 N-6 DNA methylase n=3 Tax=Actinomycetales RepID=A8L1U0_FRASN Length = 564 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 113/244 (46%), Gaps = 22/244 (9%) Query: 123 SRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFL 182 +RD G++YE L++ A G+++TP +++ ++ +L+P V DP G+ G Sbjct: 197 ARDVLGEVYEYFLERFARAEGKRGGEFYTPASVVRLLVEVLEPYEGRVY-DPCCGSGGMF 255 Query: 183 IEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGG 242 ++A+++V + G T I A G E T RLA MN +H I G+L Sbjct: 256 VQAEKFVVAHR-------GLTHSGDI--AVYGQESNERTWRLAKMNLAIHGITGDL---- 302 Query: 243 AIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNIT-----RTFVHPTSNKQLCFMQHII 297 + R +T +D +A + NPPF + R PT N ++QHII Sbjct: 303 SARWDDTFRNDRHPDLRADFILANPPFNMSDWARTVDDQRWRYGTPPTGNANFAWLQHII 362 Query: 298 ETLHPGGRAAVVVPDNVLF--EGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVL 355 L G A VV+ + + + G+G +IR L++ + ++ LP +F + + Sbjct: 363 AKLGSRGTAGVVMANGSMSSKQSGEG-EIRAALVEADLVACMIALPPQLFRTTQIPACLW 421 Query: 356 FFTK 359 FF K Sbjct: 422 FFAK 425 >UniRef50_B5EVZ6 Type I restriction-modification system, M subunit n=1 Tax=Vibrio fischeri MJ11 RepID=B5EVZ6_VIBFM Length = 515 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 72/320 (22%), Positives = 142/320 (44%), Gaps = 26/320 (8%) Query: 49 YLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPK-QITALV 107 ++PE RWD L Q + V ED+ ++ + + + P ++ L+ Sbjct: 83 WVPEEARWDFLVGSAKQTNIAKLLDEAVKAIEDNNSQLKGMLYRGFGLLKIPSSKLGELI 142 Query: 108 SNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQP 167 + L +N +S D G YE L K A + AG ++TP ++ TI+ ++ P Sbjct: 143 DLLGKLT-FNSKEHRSADVLGQAYEFFLGKFALAEGASAGAFYTPESIVSTIVEVIAPTK 201 Query: 168 REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALM 227 ++ + PA G+ G ++ ++++++ G+ D ++ G E T ++A M Sbjct: 202 GQLYE-PAIGSGGMVVCSEKFMERN-------GGERGDISVY----GQEYTHTTWKMAAM 249 Query: 228 NCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPF------GSAAGTNITRTF 281 N + ++ +L A L N L D +A + NPPF + ++ + Sbjct: 250 NLTIRGLDFDLGKENADTLLNDLHKD----LRADYIMANPPFNQEKWGAAKVAGDVRWKW 305 Query: 282 VHPT-SNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTD-IRRDLMDKCHLHTILR 339 P+ SN ++QH++ L+ GRA VV+ + + D IR+ +++ + ++ Sbjct: 306 GQPSDSNANYAWIQHMLYHLNETGRAGVVMANGAMTSTANNEDAIRKAIIEDDLVECMVA 365 Query: 340 LPTGIFYAQGVKTNVLFFTK 359 LP +F + + + FF K Sbjct: 366 LPPKLFINTQIPSCIFFFNK 385 >UniRef50_B5Y625 Type I restriction/modification enzyme n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y625_COPPD Length = 678 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 30/219 (13%) Query: 169 EVVQDPAAGTAGFLIEADRYVKSQTNDL--------------DDLDGDTQDFQIHR---- 210 E + DPAAGT GF++ A VKS+ ++L + + D + + Sbjct: 8 EKIYDPAAGTGGFILRAFEVVKSKIDNLVKAGMRVNESTAAYNGVQFDEAEMLYRKLKEE 67 Query: 211 AFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFG 270 + +E P +LALMN +LH+ +G + A L N + E+ K +V TNPP+G Sbjct: 68 SLYAVEKAPDVYKLALMNMILHN-DGKSNLFEADSLDNR--AQLEHKEKYDVVLTNPPYG 124 Query: 271 SAAGTNITRTFVHPTSNKQLCFMQHIIETLHPG------GRAAVVVPDNVLFEGGK-GTD 323 A + + TF + F+QHI+ L P RA V++ D +LF+ + Sbjct: 125 PLAQSRVG-TFEFHAKRYEALFIQHIMAALRPSEPGKKRSRAVVIILDKILFDNSSVFKN 183 Query: 324 IRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGT 361 IR L+ + L + +P GIF GVKT VL+F K T Sbjct: 184 IRMKLLREFDLKAVFSMPAGIFQPYSGVKTTVLYFEKPT 222 >UniRef50_C7MM99 Type I restriction system adenine methylase HsdM n=8 Tax=Bacteria RepID=C7MM99_CRYCD Length = 856 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 73/261 (27%), Positives = 111/261 (42%), Gaps = 36/261 (13%) Query: 125 DDFGDMYEGLLQKNANETKSGAGQYFTPRP---LIKTIIHLLKPQPREV-VQDPAAGTAG 180 D G +YE LL+K A AG+++TP LI I+ R++ + DP +G+ Sbjct: 163 DVLGYIYEYLLEKFATNAGKKAGEFYTPHEVSQLISEIVAWHLQSRRQIEIYDPTSGSGS 222 Query: 181 FLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDH 240 LI + V + + D + + EL T L MN ++ G L Sbjct: 223 LLINIGKAVARRNGNPDSI-----------KYYAQELKENTYNLTRMNLVMR---GILPD 268 Query: 241 GGAIRLGNTLGSDG------ENLPKAH------IVATNPPFGS---AAGTNITRTF---V 282 A+R G+TL D EN + + V +NPP+ I F V Sbjct: 269 NIAVRNGDTLADDWPWFDTVENKDETYKPLFVDAVVSNPPYSQDWDPVDKEIDPRFEYGV 328 Query: 283 HPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPT 342 P S F+ H + L G +V+P VLF GG+ IRR+L++ H+ I+ LP Sbjct: 329 APKSKADYAFLLHDLYHLRNDGIMCIVLPHGVLFRGGEEGLIRRNLVEHRHIQAIIGLPA 388 Query: 343 GIFYAQGVKTNVLFFTKGTVA 363 IF+ G+ T ++ K A Sbjct: 389 NIFFGTGIPTIIMVLRKQRAA 409 >UniRef50_A6P0G2 Putative uncharacterized protein n=2 Tax=Bacteria RepID=A6P0G2_9BACE Length = 622 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 70/250 (28%), Positives = 108/250 (43%), Gaps = 28/250 (11%) Query: 125 DDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIE 184 D G +YE L K A G +FTP+ L+K I+++L+P + ++ DPA G+ G + Sbjct: 164 DIVGRIYEYFLNKFAKNIAQDDGVFFTPKSLVKMIVNVLEP-TQGILLDPACGSGGMFV- 221 Query: 185 ADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAI 244 QT D + G + + F G E V +L LMN +H + G + G Sbjct: 222 -------QTGDFVEHAGMLANNTM--TFYGQEKVEYNAKLCLMNLAVHGLNGIVKSGDE- 271 Query: 245 RLGNTLGSDGENLPKA-HIVATNPPFG-----SAAGTNITRT-FVHPTSNKQ-------L 290 NT D NL V NPPF S + + R F P+ NK Sbjct: 272 --ANTFYHDAHNLEGCCDYVMANPPFNVDKVKSESAQSAGRLPFGLPSVNKNKEIGNGNY 329 Query: 291 CFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGV 350 ++ + L+ GRA V+ + GK DIR L+ H+ ++ + FY + + Sbjct: 330 LWISYFYAYLNEQGRAGFVMASSATDSQGKDKDIREQLVKTGHVAVMVSVGNNFFYTKSL 389 Query: 351 KTNVLFFTKG 360 ++ FF KG Sbjct: 390 PCSLWFFDKG 399 >UniRef50_A5UWR2 N-6 DNA methylase n=9 Tax=cellular organisms RepID=A5UWR2_ROSS1 Length = 523 Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 91/378 (24%), Positives = 153/378 (40%), Gaps = 32/378 (8%) Query: 49 YLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITA--- 105 Y+PE RW ++ R + QF + + ++ L Q V + V T Q Sbjct: 80 YIPENARWKAIRQRGVRTLGQFLTDAVRDVARENPAL-QGVINMVDFNATTAGQRIIPDD 138 Query: 106 -LVSNMDSLDWYN-GAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL 163 L +D L + G D G YE LL+K A AG+++TP + + LL Sbjct: 139 HLSKLIDVLSRHRLGLQDVEPDILGRAYEYLLRKFAEGQGQSAGEFYTPGEVAILMAQLL 198 Query: 164 KPQPREVVQDPAAGTAGFLIEAD-RYVKSQ-TNDLDDLDGDTQDFQIHRAFIGLELVPGT 221 PQPR V DP G+ G LI+ R +++ T R F G E+ P T Sbjct: 199 DPQPRMTVYDPTCGSGGLLIKCHLRLLETHGVRSGRKFSTATPGVAPLRLF-GQEINPAT 257 Query: 222 RRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNP------PFGSAAGT 275 +A MN ++HD+E ++ G +R + + G L V NP P + Sbjct: 258 FAMARMNAVIHDLEADIRIGDTMRHPAFVDAAGR-LQTFDRVTANPMWNQKFPVETYEND 316 Query: 276 NITRTF--VHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGG------KGTDIRRD 327 R + P S+ ++QH++ +LH G+ AVV+ + G + DIR+ Sbjct: 317 PYERFTLGIPPHSSADWGWLQHMLASLHERGKMAVVLDTGAVSRGSGNQGSNRERDIRKA 376 Query: 328 LMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSF 387 +++ + ++ LP +FY G + N+ K ++ + + Sbjct: 377 FVERDLIEAVILLPENLFYNTT--------APGIILVVNRRKARRGEILLINASQQFAKG 428 Query: 388 GKRTPFTDEHLQPFERVY 405 + T+EH+ +Y Sbjct: 429 RPKNYLTEEHIARIADIY 446 >UniRef50_C6MCS3 N-6 DNA methylase n=2 Tax=Proteobacteria RepID=C6MCS3_9PROT Length = 772 Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 95/408 (23%), Positives = 160/408 (39%), Gaps = 69/408 (16%) Query: 6 LVAKLWKLCDNLR-DGGVSYQNYVNELASLLFLKMC------KETGQEAEYLP-EGYRWD 57 L A LW D LR + + Y + L+FLK E +EY +G R + Sbjct: 9 LEADLWSAADTLRANSDLKSSEYATPVLGLIFLKFADNNYRRHEKAILSEYQQLQGTRRE 68 Query: 58 DLKSRIGQEQLQFY------RKMLVHLGEDDKKLVQAVFHNVSTTITE---------PKQ 102 S I EQ FY L++L E+ K + I E PK Sbjct: 69 KPVSEIAIEQCGFYLPDHTRYDYLLNLPEE--KDIAKALKEAMKAIEEYKPELEGVLPKD 126 Query: 103 ITALVSNMDSL-------DWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPL 155 A ++ D + + + D FG +YE L + A G++FTPR + Sbjct: 127 EYAALTRTDKTIPQQLLRTFADIPANATGDLFGQIYEYFLSEFARSEGQKGGEFFTPRSV 186 Query: 156 IKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGL 215 ++ ++ +++P +V DPA G+ G +++ +++ + N+L D G Sbjct: 187 VRLMVEIIEPHGGKVF-DPACGSGGMFVQSAQFIAAHRNELKGADSGV-------YVCGQ 238 Query: 216 ELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDG-ENLPKAHIVATNPPFG---- 270 E T +LA MN ++ + G I+ NT D ++ + V NPPF Sbjct: 239 EKTQDTVKLAKMNLAVNGLRGE------IKQANTYYEDPYDSFEQFDYVLANPPFNVDDV 292 Query: 271 SAAGTNITRTF------------------VHPTSNKQLCFMQHIIETLHPGGRAAVVVPD 312 S + R F N ++ +L P GRAA+V+ + Sbjct: 293 SLSSVEKDRRFNTYGIPRNKSKVKKADEGKETVPNGNYLWISLFATSLKPQGRAALVMAN 352 Query: 313 NVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 360 + DIR+ L+++ ++ +L LP+ +FY + + FF K Sbjct: 353 SASDARHSEADIRKTLIEQNLIYAMLTLPSNMFYTVTLPATLWFFDKA 400 >UniRef50_B0S3L0 Type I restriction-modification system DNA methylase n=2 Tax=Bacteria RepID=B0S3L0_FINM2 Length = 579 Score = 88.6 bits (218), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 94/429 (21%), Positives = 178/429 (41%), Gaps = 55/429 (12%) Query: 49 YLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVS 108 YLPE +D + K + ED+ + V P++ L+S Sbjct: 82 YLPECAYYDFINDAPDDANKATLVKKAMEAIEDENPKMDGVLPKEVYAQLVPEEEPELLS 141 Query: 109 NMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPR 168 N+ + + + + D FG++YE L A G ++TP +++ ++ +L PQP Sbjct: 142 NIVRI-FKDIPENSTIDIFGEIYEYFLGNFALAEGKDGGTFYTPATVVRYMVEVLNPQPG 200 Query: 169 E-VVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALM 227 E DPA G+ G ++A RY+ + ++ Q+ G+E P T +LA M Sbjct: 201 EKKFLDPACGSGGMFVQAARYMHNHNA--------SESEQMKFRCYGVEKEPDTVKLAKM 252 Query: 228 NCLLHDIEGNLDHGGAIRLGNTLGSDGEN-LPKAHIVATNPPFG-------SAAGTNITR 279 N LL+++ G++ N+ SD N + V NPPF + N Sbjct: 253 NLLLNNVRGDITE------ANSFYSDPYNAYGQFDYVMANPPFNVDEVVVEKVSDDNRFN 306 Query: 280 TFVHP----------------TSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTD 323 T+ P N ++ + L+ G+AA+V+ ++ G D Sbjct: 307 TYGVPRNKSKSKKKKSDKKETVPNANYLWIGYFATALNEKGKAALVMANSASDASGSEYD 366 Query: 324 IRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTN 383 IR+ ++++ + ++ LP+ +F + + + FF K PN DK +++ D R Sbjct: 367 IRKKMIEEGIISQMVTLPSNMFSSVTLPATLWFFDK---QKPNTDKK--NEILFIDARNV 421 Query: 384 MPSFGK-RTPFTDEHLQPF---ERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTD 439 + F+DE ++ ++Y + L + E+ + E+A++ E+ + Sbjct: 422 FTQVDRAHRKFSDEQIKNLGVITKLYHGNAQALVDLID-EY-----KAELANAPESSDDK 475 Query: 440 QHLATSRWR 448 + L S W+ Sbjct: 476 EVLTKSYWQ 484 >UniRef50_A4CI92 Type I restriction-modification system DNA methylase n=3 Tax=Bacteroidetes RepID=A4CI92_9FLAO Length = 531 Score = 88.2 bits (217), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 65/247 (26%), Positives = 114/247 (46%), Gaps = 30/247 (12%) Query: 125 DDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIE 184 D G +YE + K A SGAGQ+FTP +++ ++ +++P ++ D A G+ G ++ Sbjct: 170 DILGRVYEYYIGKFAIAEGSGAGQFFTPGSIVRLMVEMIEPYKGKIF-DAACGSGGMFVQ 228 Query: 185 ADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAI 244 + +++++ GD ++ I+ G E GT RL MN L D+ + + Sbjct: 229 SLKFLEAHG-------GDKRNISIY----GQERYSGTLRLCKMNLALRDLSFD------V 271 Query: 245 RLGNTLGSDGENLPKAHIVATNPPFGSAA------GTNITRTF-----VHPTSNKQLCFM 293 RLG++L D +A + NPPF + R F N +M Sbjct: 272 RLGDSLLQDKFPDLEADYILVNPPFNVSQWHPEDLPDKDPRLFGPKEEFTTDGNANYMWM 331 Query: 294 QHIIETLHPGGRAAVVVPDNVLFEGGKG-TDIRRDLMDKCHLHTILRLPTGIFYAQGVKT 352 Q L G AAVV+ + + G KG ++R+ ++D+ + I+RLP +F G+ Sbjct: 332 QTFWSHLSNTGTAAVVMANGAMTTGNKGEKNVRQHMVDEGMIDAIVRLPDKLFLTTGIPA 391 Query: 353 NVLFFTK 359 + +K Sbjct: 392 CIFILSK 398 >UniRef50_D2NT11 Type I restriction-modification system methyltransferase subunit n=1 Tax=Rothia mucilaginosa DY-18 RepID=D2NT11_9MICC Length = 569 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 76/278 (27%), Positives = 119/278 (42%), Gaps = 38/278 (13%) Query: 106 LVSNMDSLDWYN---GAHGKSRDDFGDMYEGLL-QKNANETKSGAGQYFTPRP----LIK 157 L+ MD++ N G D FGD YE L+ AN KSG G+Y+TP+ L K Sbjct: 196 LLKLMDAVAGMNLGKGYEDSENDAFGDAYEYLMGMYAANAGKSG-GEYYTPQEVSELLAK 254 Query: 158 TIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLEL 217 + V DPA G+ L++ R + + L FIG E+ Sbjct: 255 IAMDGRDADKIRSVYDPACGSGSLLLKFKRELGKNSKGL--------------RFIGQEI 300 Query: 218 VPGTRRLALMNCLLHDI---EGNLDHGGA-IRLGNTLGSDGENLPKAHIVATNPPFGSAA 273 T L MN +LH + E ++ HG I + G + + + + +NPP+ + Sbjct: 301 NLTTYNLCRMNMMLHGVPVDEFSIAHGDTLIDPKHRNGKNPKFVEPFGAIVSNPPYSTKW 360 Query: 274 GTNITRTFVH-----------PTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGT 322 + T H P S L F H++++LH G AA+V VL+ G Sbjct: 361 KGDDDPTLKHDDRYAPAGVLAPKSKADLAFTMHMLKSLHEAGTAAIVEFPGVLYRSGAER 420 Query: 323 DIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 360 IR L+ + + +++LP+ +FY + T +L KG Sbjct: 421 TIREYLLIENRVDAVIQLPSNLFYGTSIATCILVLKKG 458 >UniRef50_Q0KFR5 Type I restriction-modification system methylation subunit n=5 Tax=Proteobacteria RepID=Q0KFR5_RALEH Length = 835 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 69/250 (27%), Positives = 105/250 (42%), Gaps = 32/250 (12%) Query: 125 DDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIE 184 D G YE L+ + A+ G+++TPR +++ ++ L++P + DP G+ G LI Sbjct: 163 DLLGAAYEYLIGEFADSAGKKGGEFYTPRSVVRMMVRLIQPTLAHDIYDPCCGSGGMLIA 222 Query: 185 ADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE-GNLDHGGA 243 A Y+ D + G E +A MN LLH I NL + Sbjct: 223 AKEYIDEHGEDGRKAN-----------LFGQEFNGTVWSIAKMNMLLHGISTANLQNEDT 271 Query: 244 IRLGNTLGSDGENLPKAHIVATNPPFG--------SAAGT-----NITRTFVH---PTSN 287 L +G L V TNPPF +A GT F + P Sbjct: 272 --LAEPQHVEGGELMHFDRVLTNPPFSINWGNTEKNADGTPAWSPKFPERFRYGQVPLGA 329 Query: 288 KQ--LCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIF 345 K+ L F+QH++ GG A V+P VLF GG+ IR +++ L +L + +F Sbjct: 330 KKADLMFLQHMLAVTRDGGMVATVMPHGVLFRGGEEKAIRAGIVEDDLLEAVLGVAPNLF 389 Query: 346 YAQGVKTNVL 355 Y G+ +L Sbjct: 390 YGTGIPACIL 399 >UniRef50_C2C3E3 Site-specific DNA-methyltransferase, adenine-specific n=12 Tax=Bacilli RepID=C2C3E3_LISGR Length = 531 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 99/425 (23%), Positives = 162/425 (38%), Gaps = 86/425 (20%) Query: 3 NNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETG-QEAEYLPEGYRWDDLKS 61 +N+ K+W + + R G + Y + + +LF K E Q E + G W+ + S Sbjct: 4 SNEQQNKMWAMLNQTR-GQIGLTAYKDYIFGILFYKYLSEKATQWLESVLRGESWESIYS 62 Query: 62 RIGQEQLQFYRKMLVH------LGEDDKKLVQAVFHNV---STTITEPKQITALVSNMDS 112 + L + +K L + D KK ++ N+ + T Q A + D Sbjct: 63 QDPARSLDYMKKNLGYAIRPNNFFSDWKKAIEEDQFNIGLMTDTFGHFNQQIAFEAKSDF 122 Query: 113 LDWYNG---------AHGKSR----------------------DDFGDMYEGLLQKNANE 141 ++G A+ ++R D D+YE L+ K A Sbjct: 123 EGIFDGMRFDSADLGANAQARASVMISMIEVLSAPEFDLSGGDDAISDIYEYLVAKFATV 182 Query: 142 TKSGAGQYFTPRPLIKTIIHLLKPQPREV----VQDPAAGTAGFLIEADRYVKSQTNDLD 197 S GQY+TP+ + + +L E + DP G+ L+ Y+K+ Sbjct: 183 LASDMGQYYTPKEISDVMAQILTFGREEAEHFSIYDPTVGSGSLLLTTASYMKNS----- 237 Query: 198 DLDGDTQDFQIHR----AFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSD 253 H+ + G E RL+ MN ++H +E N +I +TL SD Sbjct: 238 -----------HKRGMIKYFGQEKDATPYRLSRMNLMMHGVEYN---DVSINHADTLKSD 283 Query: 254 -------GENLPKAH-IVATNPPFGSAAGTNITRT--------FVHPTSNKQLCFMQHII 297 G++ P+ V NPP+ SA N R V P + F+ H + Sbjct: 284 WPDGVVEGKDNPRMFDAVMANPPY-SAHWNNKDREDDPRWREYGVAPKTKADYAFLLHCL 342 Query: 298 ETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFF 357 L GR A+++P VLF G IR+ L+DK + ++ P +F + VL Sbjct: 343 YHLEDNGRMAIILPHGVLFRGAAEGRIRKALIDKHQIEAVIGFPDKLFLNTSIPVCVLIL 402 Query: 358 TKGTV 362 K V Sbjct: 403 RKNRV 407 >UniRef50_UPI0001B52AE5 type I restriction-modification system, M subunit n=1 Tax=Fusobacterium sp. D11 RepID=UPI0001B52AE5 Length = 834 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 83/336 (24%), Positives = 146/336 (43%), Gaps = 34/336 (10%) Query: 67 QLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDD 126 + FY+++ ++ + +++ + + K + L+ +++ N + D Sbjct: 289 KFDFYKQLKDIRARENTENNESIKEEIDKNSNKKKNESTLMKIHKAIEEINSTNDLPIDL 348 Query: 127 FGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQ--------DPAAGT 178 FG++YE L K +TKS G++FT R +IK I+ + DPA GT Sbjct: 349 FGEVYECLASK---KTKSMLGEFFTRRHIIKAIVRMFFSSKDIKDIIKYKKIIVDPACGT 405 Query: 179 AGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNL 238 GFL E+ +Y+K+ L ++ +G ++ + +N +L Sbjct: 406 GGFLTESFKYIKNYCEKEKKLSKKEISELANKIIVGYDINANSIGRTRINMILTG----- 460 Query: 239 DHGGAIRLGNTLGSDGENLPK-------AHIVATNPPFGS---AAGTNITRTFVHPTSNK 288 D I NTL ++ N + V TN P+G A + F+ NK Sbjct: 461 DGFSDIDRYNTLQANWYNQKENSGIKKDVDYVLTNVPYGQGDYAVSNKESDEFIKNNKNK 520 Query: 289 --QLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIF- 345 +L F+ IIE L GGRA++++P+ +L E ++ R L+ +C + TI+ LP F Sbjct: 521 RLELNFVLKIIEMLKEGGRASIILPEGLL-EAPTLSNFRDYLLRQCKIETIISLPKFAFA 579 Query: 346 -YAQGVKTNVLFFTKGTVANPNQDK--NCTDDVWVY 378 Y + KT V+F K +K N + +W Y Sbjct: 580 PYTKW-KTYVIFLEKREKILETIEKVINKNEKIWCY 614 >UniRef50_B0S355 Type I restriction-modification system DNA methylase n=15 Tax=cellular organisms RepID=B0S355_FINM2 Length = 502 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 61/246 (24%), Positives = 114/246 (46%), Gaps = 25/246 (10%) Query: 123 SRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFL 182 S D G YE + + A + G G+++TP ++KT++ +LKP V D G+ G Sbjct: 150 SEDLLGRTYEYCIAQFAEKEGVGGGEFYTPSSVVKTLVSILKPFENCRVYDCCCGSGGMF 209 Query: 183 IEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGG 242 +++++++++ + + G E P T ++A MN + I+ + Sbjct: 210 VQSEKFLEAHGAKRGAI-----------SVYGQEANPDTWKMAKMNMAIRGIDADFGPYN 258 Query: 243 AIRLGNTLGSDGENLPKAHIVATNPPF-----GSAAGTNITR--TFVHPTSNKQLCFMQH 295 A +T +D KA + NPPF G A + R + P N ++QH Sbjct: 259 A----DTFSNDLHPTLKADFILANPPFNYHPWGQQALQDDKRWKYGLPPAGNANYAWIQH 314 Query: 296 IIETLHPGGRAAVVVPDNVLF--EGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTN 353 +I L P G+ +V+ + L G+GT IR+ +++ + I+ +PT +FY+ + Sbjct: 315 MIHHLAPNGKIGLVLANGALSTQTSGEGT-IRKKIIEDDLIEGIVAMPTQLFYSVTIPVT 373 Query: 354 VLFFTK 359 + F +K Sbjct: 374 LWFISK 379 >UniRef50_C7NM08 Type I restriction-modification system methyltransferase subunit n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NM08_KYTSD Length = 644 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 115/470 (24%), Positives = 187/470 (39%), Gaps = 98/470 (20%) Query: 5 DLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKET--GQEAEYLPEGYRWDDLKSR 62 D VA +W++ D LR G Y + + LL L+ +AE + + WD + Sbjct: 8 DKVAFVWRIADRLR-GTFKQHEYGSVMLPLLVLRRMDAALADTKAEVVAQAKGWDTIGP- 65 Query: 63 IGQEQL-------QFYR---------------------KMLVHLGEDDKKLVQAV-FHNV 93 GQ++L FY K + HL + ++++A F Sbjct: 66 -GQDKLLKRTSRRPFYNTSPLTFAGLLNDADNLRENLAKYIRHLSPEAARVIEAYDFDPK 124 Query: 94 STTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153 + + ++++ LD S + G ++E LL+K + + AG+++TPR Sbjct: 125 IERMDRDDILYGVIADFADLDLRTSV--VSNEAMGYIFEELLRKFSEMSNETAGEHYTPR 182 Query: 154 PLIKTIIHLL-----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGD 202 +I ++ LL P+P V DPAAGT G L+ A LD + G Sbjct: 183 EVISLMVQLLLTGKTHTELMENPRPVRTVYDPAAGTGGMLVGA----------LDGVQGL 232 Query: 203 TQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRL--GNTLGSDGENLPKA 260 + + G EL T +A + ++ I G R+ GN+L D + Sbjct: 233 NGNATV--TVSGQELNDETWAIAQSDLMMLGI-------GPERMARGNSLTQDAFPTEQF 283 Query: 261 HIVATNPPFG------------SAAGTNITRTFVHPT---SNKQLCFMQHIIETLHPGG- 304 + NPP+G A + F T S+ F+QH+I + PGG Sbjct: 284 DFMLANPPYGVDWKKYAGPIKDEAENLGFSGRFGAGTPRVSDGSFLFLQHMISKMKPGGS 343 Query: 305 RAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGT 361 R +V+ + LF G G ++IR +++ L I+ LP +FY G+ T V T Sbjct: 344 RIGIVLSGSPLFSGQAGSGESEIRGWILENDWLEGIVALPDQMFYNTGISTYVWILTN-- 401 Query: 362 VANPNQDKNCTDDVWVYDLR---TNM-PSFG-KRTPFTDEHLQPFERVYG 406 ++D V + D R T M S G KR E ++ +YG Sbjct: 402 ----DKDGASRGKVRLIDAREMGTKMRKSLGDKRKELKPEAIREITNLYG 447 >UniRef50_A3J6X4 Type I restriction-modification n=1 Tax=Flavobacteria bacterium BAL38 RepID=A3J6X4_9FLAO Length = 578 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 86/312 (27%), Positives = 135/312 (43%), Gaps = 55/312 (17%) Query: 128 GDMYEGLLQKNANETKSGAGQYFTPR---PLIKTII------HLLKPQPREVVQDPAAGT 178 G ++E L++ + ++ AG++FTPR L+ TI+ L +P + DPA GT Sbjct: 161 GYVFEELIRISNEQSNETAGEHFTPRDVIALMNTILFVNEKQELAQPGIIRTIFDPACGT 220 Query: 179 AGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNL 238 G + Y+ LD L D+++ + + G EL + +A L+ E N Sbjct: 221 GGMVNLGKNYI------LDTLLKDSKNKPTIQTY-GQELNEQSYAIAKSEALITGEEAN- 272 Query: 239 DHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTN---ITRTFVHP----------T 285 I+ GN+ D H + NPP+G + I ++P T Sbjct: 273 ----NIKHGNSFSEDQFQGKHFHYMMANPPYGVTWKKDQKFIENESLNPAGRFYAGLPRT 328 Query: 286 SNKQLCFMQHIIETL-HPGGRAAVVVPDNVLFEGGKGT---DIRRDLMDKCHLHTILRLP 341 S+ QL F+QH++ + G R VV + LF G G+ DIR+ +++ L I+ LP Sbjct: 329 SDGQLLFLQHMLSKIEREGSRIGVVTNGSPLFTGDAGSGESDIRKWIIENDWLECIVALP 388 Query: 342 TGIFYAQGVKTNVLFFT-------KGTVANPNQDKNCTDDVWVYDLRTNMPSFG-KRTPF 393 +FY G+ T + F T KG V N C R+N S G KR Sbjct: 389 KDMFYNTGINTYIWFLTNKKEKQRKGKVQLINAVDYC---------RSNKKSLGNKRNEI 439 Query: 394 TDEHLQPFERVY 405 T EH+ ++Y Sbjct: 440 TAEHITDILKLY 451 >UniRef50_B1MYY1 Type I restriction-modification system, M subunit n=2 Tax=Lactobacillales RepID=B1MYY1_LEUCK Length = 531 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 104/435 (23%), Positives = 176/435 (40%), Gaps = 92/435 (21%) Query: 103 ITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTI--I 160 IT ++ +D +D + D GD YE L+ + A AG+++TP+ + + I I Sbjct: 152 ITEVLRALDEIDLFE----HDGDVIGDAYEYLIGQFAAGAGKKAGEFYTPQAVSRIISEI 207 Query: 161 HLLKPQPREV--VQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELV 218 + + R + DP G+ ++ RY+ + Q+H + G EL Sbjct: 208 AAIGQEDRAPFHIYDPTMGSGSLMLNIRRYLSNPK-------------QVH--YHGQELN 252 Query: 219 PGTRRLALMNCLLHDIEG---NLDHGGAIRLGNTLGSD--GENLPKAHIVATNPPFG--- 270 T LA MN +LH ++ NL++G +TL +D E + V NPP+ Sbjct: 253 TTTYNLARMNLILHGVDQDRMNLNNG------DTLDADWPTEEPHQFDAVVMNPPYSAKW 306 Query: 271 SAAGTNIT-RTF-----VHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDI 324 SAA ++ + F + P S F+ H L G +V+P VLF G I Sbjct: 307 SAADKFLSDQRFERFGKLAPKSKADFAFLLHGFYHLKDSGTMGIVLPHGVLFRGAAEGTI 366 Query: 325 RRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNM 384 R+ L++ + ++ LP IFY + T V+ K + DV D + Sbjct: 367 RQALLEMGAIDAVIGLPANIFYGTSIPTTVIILKKN---------RSSRDVLFIDASQDF 417 Query: 385 PSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLAT 444 + + +H+Q Y E RT+ E + + VA +E K D +L Sbjct: 418 DKQKTQNVLSPKHIQKIVSAYKE-------RTDTE-----KYSHVASYDEIKENDFNLNI 465 Query: 445 SRWRKFSREWIRTAKSDSLDISWLKDKDSID----ADSLPEPDVLAAEAMGELVQALSEL 500 R+ + +D+ +D +D + + D EL + S+L Sbjct: 466 PRY-----------------VDTFEDEAPVDLVKVSDEISKID-------QELSEKQSDL 501 Query: 501 DALMRELGASDEADL 515 A+M EL ++E+ L Sbjct: 502 LAMMNELAVNEESQL 516 >UniRef50_C8MCW8 Predicted protein n=1 Tax=Staphylococcus aureus A9635 RepID=C8MCW8_STAAU Length = 625 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 91/397 (22%), Positives = 170/397 (42%), Gaps = 60/397 (15%) Query: 7 VAKLWKLCDN---LRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLKSRI 63 + K++++C N DG + + + NE+ +LF+K+ E + G + + Sbjct: 168 LVKIFEICHNHVYANDGHLKDKVF-NEMLKILFIKLMDERNHTSRIADFGITEQEYDEIL 226 Query: 64 GQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKS 123 ++ F + + +L K Q +F+ + + +V M + D +H S Sbjct: 227 NHKENDF-KVRINNLFNKAKNNYQDIFNPNEKINLKLSTLAFVVGQMQNFDL---SHS-S 281 Query: 124 RDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLI 183 RD G ++ + + + G++FTP P+I+ + ++ P+ E + DPA GT GFL+ Sbjct: 282 RDVKGLAFQKFVYAHQ---RGDRGEFFTPDPIIELAVKMINPKIDETILDPACGTGGFLV 338 Query: 184 EADRYVKSQTNDLD-----DLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNL 238 A ++V+ DL D + D+ + R G++ P +++ M +L D Sbjct: 339 AALKHVEESIIDLKAERPIDFEKAKTDYAL-RKLRGIDFNPDLVKVSKMRMILED----- 392 Query: 239 DHGGAIRLGNTL-------------GSDGENLPKAHIVATNPPF---GSAAGTNITRTF- 281 D I N+L G++ N I+ TNPPF G+ +I R + Sbjct: 393 DGHTGIFQANSLDTLREIEIQALKSGANNINENSVDIILTNPPFGRKGTITDKDILRQYE 452 Query: 282 ----------VHPTSNKQL-------CFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDI 324 + S+K L F++ + L G+ A+V+PD+VL G K + Sbjct: 453 LGHQWVKNNDSYENSHKVLDDQVPDILFIERCYQFLKNKGKMAIVLPDSVL-TGPKLQYV 511 Query: 325 RRDLMDKCHLHTILRLPTGIFYAQG--VKTNVLFFTK 359 R ++ + + ++ LP F G VK ++L K Sbjct: 512 RNYILKRFKVVGVVSLPYETFIPHGANVKASILLLQK 548 >UniRef50_Q3A0E7 Type I restriction-modification system methyltransferase subunit n=26 Tax=Bacteria RepID=Q3A0E7_PELCD Length = 708 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 75/293 (25%), Positives = 128/293 (43%), Gaps = 33/293 (11%) Query: 125 DDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIE 184 D+ G YE L++K A+++ A +++T R ++ + +L+P+P E + DP G+AG L+ Sbjct: 147 DELGVGYEFLIKKFADDSGHTAAEFYTNRTVVHLMTEMLEPRPGESIYDPTCGSAGMLLS 206 Query: 185 ADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAI 244 A ++K Q + +L R F G E T + MN LH IE G Sbjct: 207 AVAHLKRQNKEWRNL----------RLF-GQERNLLTSAIGRMNLFLHGIEDFRIVRGDT 255 Query: 245 RLGNTLGSDGENLPKAHIVATNPPF-----------GSAAGTNITRTFVHPTSNKQLCFM 293 L N +G+ L + +V NPP+ + G N+ T P F Sbjct: 256 -LANPAFVEGDRLKQFDVVLANPPYSIKQWDRDAWSADSWGRNLYGT--PPQGRADYAFW 312 Query: 294 QHIIETLHP-GGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKT 352 QHII+++ GR A++ P VLF + +R L+ + +L L +FY ++ Sbjct: 313 QHIIKSMKAKSGRCAILFPHGVLFR-NEELAMREKLVAHDVVECVLGLGPNLFYNSPMEA 371 Query: 353 NVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVY 405 V+ + N+ K + V + + ++ TD+H+Q Y Sbjct: 372 CVV------ICRMNKPKERRNKVLFINAVNEVTRERAQSFLTDDHIQHIVAAY 418 >UniRef50_A6NS04 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NS04_9BACE Length = 524 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 72/267 (26%), Positives = 112/267 (41%), Gaps = 54/267 (20%) Query: 125 DDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIE 184 D GD YE ++ + A+ AG ++TP + + + ++ QP E V DP G+ LI+ Sbjct: 160 DVIGDAYEYMIGQFASMAGKKAGSFYTPAAVSEIMARIVDVQPGERVYDPTCGSGSLLIK 219 Query: 185 ADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAI 244 A K Q ++++ I+ G E+ + +A MN +H+I I Sbjct: 220 A---AKKQ---------NSKEVSIY----GQEVNGSSVAMAKMNMYIHEI-----RDAKI 258 Query: 245 RLGNTLG------SDGENLPKAHIVATNP-----------PFGSAAGTNITRTF------ 281 G+TL SDG L IVA P P G ++G + F Sbjct: 259 AWGDTLANPLFLDSDGNLLLFDAIVANMPFSKDKWASGFNPGGESSGKG-KKEFKMEASL 317 Query: 282 ---------VHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKC 332 V P S F+ H+I +L GR A V P VLF G IR+ ++++ Sbjct: 318 DKFHRFDWGVPPASKGDWAFLLHMIASLSVNGRIAAVAPHGVLFRGAAEGRIRQKVIEEN 377 Query: 333 HLHTILRLPTGIFYAQGVKTNVLFFTK 359 L ++ LP +FY + +L F K Sbjct: 378 LLDAVIGLPENLFYGTSIPACILVFKK 404 >UniRef50_B0JHK8 Type I restriction enzyme EcoEI M protein homolog n=2 Tax=Microcystis aeruginosa RepID=B0JHK8_MICAN Length = 677 Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 71/257 (27%), Positives = 117/257 (45%), Gaps = 37/257 (14%) Query: 128 GDMYEGLLQKNANETKSG-AGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEAD 186 GD+ Q N + G G++FTP P+++ + ++ P+P E + DPA G+ GFLI+A Sbjct: 142 GDIKGEAFQTFVNRHQRGDRGEFFTPHPIVRLAVEMIDPKPNEKIIDPACGSGGFLIQAI 201 Query: 187 RYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRL 246 +V+ Q N D+ Q+ + G+E P +AL + EG G I Sbjct: 202 NHVR-QNNPEFDIASFVQE-----SITGIEFNPD---VALSGMIRLVFEGGT--GSEIIC 250 Query: 247 GNTLGSDGENLPKAHIVATNPPFGSAAGT---NITRTF---------------VHPT--- 285 N L D + ++ TNPPFG+ I +++ V PT Sbjct: 251 TNALIEDEKLNNSFDVILTNPPFGNKGKVEDQKILKSYLLARKWHKSASNGWEVSPTVLA 310 Query: 286 -SNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGI 344 + + F++ I+ L GGR A+++PD +L G IR L + + ++ +P Sbjct: 311 GQSPDILFIEKSIKLLRAGGRMAIILPDGLLQNISNGP-IRHWLRSQTKILGVVSIPPEA 369 Query: 345 F--YAQGVKTNVLFFTK 359 F Y G+KT++L K Sbjct: 370 FVPYGTGIKTSLLVVQK 386 >UniRef50_Q2KZB8 Restriction-modification system, modification (Methylase) subunit (Fragment) n=24 Tax=Bacteria RepID=Q2KZB8_BORA1 Length = 924 Score = 84.7 bits (208), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 76/301 (25%), Positives = 121/301 (40%), Gaps = 43/301 (14%) Query: 83 KKLVQAVFHNVSTTI-----TEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQK 137 K+L + +F + T + T KQ A+ + + + D G +YE L+ Sbjct: 116 KRLFEGIFKTLETGLSKLGDTAAKQTKAIGDLLQLIKDIPMDGKQGYDVLGFIYEYLIGM 175 Query: 138 NANETKSGAGQYFTPRP----LIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQT 193 A AG+++TP + + I H LK + + D +G+ L+ + + Sbjct: 176 FAASAGKKAGEFYTPHEVSVLMSEVIAHHLKDRETIQIYDSTSGSGSLLLNIGQAIAKHM 235 Query: 194 NDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI-EGNLDHGGAIRLGNTLGS 252 D D + + EL T L MN ++ I GN+ R +TL Sbjct: 236 GDKDSI-----------KYYAQELKENTYNLTRMNLVMRGILPGNI----VTRNADTLED 280 Query: 253 D-----------GENLPKAHIVATNPPFGSA-------AGTNITRTFVHPTSNKQLCFMQ 294 D N V +NPP+ A R + P S F+ Sbjct: 281 DWPYFDEQDPVNSYNPLYLDAVVSNPPYSQKWDPLHKDADPRYARFGLAPKSKADYAFLL 340 Query: 295 HIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNV 354 H + L P G A+V+P VLF GG+ IR+ L++ HL TI+ LP+ IF+ G+ T + Sbjct: 341 HDLYHLKPNGIMAIVLPHGVLFRGGEEGVIRKQLIENDHLETIIGLPSNIFFGTGIPTVI 400 Query: 355 L 355 L Sbjct: 401 L 401 >UniRef50_B2VGL9 Type I restriction-modification system, M subunit n=1 Tax=Erwinia tasmaniensis RepID=B2VGL9_ERWT9 Length = 494 Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 63/236 (26%), Positives = 102/236 (43%), Gaps = 22/236 (9%) Query: 134 LLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQT 193 L +K A+E G ++TP + + L+ P+ + + DPA GT L+ A + Sbjct: 165 LFEKTASEAGLRGGDFYTPHGVSALLSELVSPRAGDSIYDPACGTGSLLLSAVHKIPY-- 222 Query: 194 NDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSD 253 + Q H + G E++ + +A +N LH + G + + Sbjct: 223 ---------IEKCQNHNVY-GQEIIKVSWNIAYINMFLHGVYSCKIKWGDVFQNPQFKNS 272 Query: 254 GENLPKAHIVATNPPFGSAAGTN---ITRTF------VHPTSNKQLCFMQHIIETLHP-G 303 L K +V +NPPF + N ++ F V P S F+ H+I +L Sbjct: 273 KSELAKFDVVLSNPPFSMSNWGNKEALSDRFGRFAMGVPPQSKADYAFILHMIASLKDDT 332 Query: 304 GRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTK 359 GR AVVVP VLF G IR +L+ + L ++ LP +F + + T +L F K Sbjct: 333 GRMAVVVPHGVLFRGANEALIRMNLIKENLLDAVIGLPERLFLSTNISTAILIFRK 388 >UniRef50_D0I0N8 Type I restriction-modification system M subunit putative n=3 Tax=Bacteria RepID=D0I0N8_VIBCH Length = 684 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 96/420 (22%), Positives = 164/420 (39%), Gaps = 81/420 (19%) Query: 3 NNDLVAKLWKLCDNLRDG--GVSYQNYVNELASLLFLKMCKET--GQEAEYLPEGYRWDD 58 + +++ ++ C N G G+ + L+F KM E ++ E+ W Sbjct: 190 DREMLLTAFRRCHNFIHGNEGMPKDAAFWQFLYLIFSKMYDERIGNRDREF------WAS 243 Query: 59 LKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNG 118 + E + R + L E KK +F + + +VS + D+ Sbjct: 244 PTEQFDDEGRKKIRARINPLFEKVKKAYPEIFAGNEEITLSDRALAFMVSELAKYDFTR- 302 Query: 119 AHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGT 178 D G Y+ ++ N + GQYFTPR IK I+ ++ PQP E V DP+ GT Sbjct: 303 ---TEMDAKGAAYQEVVGDN---LRGDRGQYFTPRGAIKLIVEMMAPQPHEKVLDPSCGT 356 Query: 179 AGFLIEADRYVKSQ-------------TNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLA 225 GFL + ++ Q T + + ++F + F G + P R + Sbjct: 357 GGFLEQTLSFINKQLREKEAISLAAETTEEFISIQQQIKEFAENNLF-GCDFDPFLCRAS 415 Query: 226 LMNCLL-HDIEGNLDHGGA-----------------IRLGNTLGSDGENLPKAHIVATNP 267 MN ++ + N+ H + I +G++ G DG ++ TNP Sbjct: 416 QMNVVMASNAMANIYHMNSLEYPHGHLKGVDPAKKTIPVGDSSGKDG----SVDVILTNP 471 Query: 268 PFGS---AAGTNITRTF-------------VHPTSNK------QLCFMQHIIETLHPGGR 305 PFGS I + T + ++ F++ ++ L GGR Sbjct: 472 PFGSDIPVTDKQILEQYDLAYVWERTENGGFRKTERRKDAVSPEILFIERCVQWLKQGGR 531 Query: 306 AAVVVPDNVLFEGGKGTD-IRRDLMDKCHLHTILRLPTGIFYAQG---VKTNVLFFTKGT 361 +V+PD +L G G + IR LM +C + + LP F + + T++LF K T Sbjct: 532 MGIVLPDGIL--GNPGDEYIRWWLMQECWVLGCVDLPVESFIVEANVNILTSLLFLKKKT 589 >UniRef50_B2A7T0 N-6 DNA methylase n=13 Tax=Bacteria RepID=B2A7T0_NATTJ Length = 673 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 85/368 (23%), Positives = 153/368 (41%), Gaps = 69/368 (18%) Query: 90 FHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQY 149 FH+ + + + +VS +D S + G ++E L++K + ++ AG++ Sbjct: 122 FHDHLERLEQSNLLYLIVSRFSEIDL--SPEKVSNLEMGYIFEELIRKFSEQSNETAGEH 179 Query: 150 FTPRPLIKTIIHLLKPQPREVVQ---------DPAAGTAGFLIEADRYVKSQTNDLDDLD 200 FTPR +I+ +++LL + +++Q DPA GT G L A Y++ ND Sbjct: 180 FTPREVIRLMVNLLFNEDSDLLQKEGLLRTIYDPACGTGGMLSVARDYLRELNND----- 234 Query: 201 GDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKA 260 G EL P + + + ++ ++ + I+ GN+ +DG + Sbjct: 235 -------AKLEMFGQELNPESYAICKADMMIKGLDPD-----NIKFGNSFTNDGFSDNTF 282 Query: 261 HIVATNPPFG--------------------SAAGTNITRTFVHPTSNKQLCFMQHIIETL 300 + +NPPFG G + R ++ + F+QH+I + Sbjct: 283 DYMLSNPPFGVEWKKIEKEIKEEHENLGFSGRYGAGLPRI-----NDGSILFLQHMISKM 337 Query: 301 ---HPGGRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNV 354 + G R A+V+ + LF G G ++IR+ +++ L I+ LP +FY G+ T V Sbjct: 338 QHQNGGSRIAIVLNGSPLFTGDAGQGESNIRKWIIENDLLEAIVALPEQLFYNTGINTYV 397 Query: 355 LFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFG-KRTPFTDEHLQPFERVYGEDPHGLS 413 T + V Y + S G KR + E + ++YGE Sbjct: 398 WVLTNRKRPWRKGKIQLINAVEFY--KKMRKSLGEKRHEISPEQIDKISKIYGE------ 449 Query: 414 PRTEGEWS 421 EGE+S Sbjct: 450 -FKEGEYS 456 >UniRef50_A5GE24 N-6 DNA methylase n=13 Tax=Bacteria RepID=A5GE24_GEOUR Length = 777 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 75/265 (28%), Positives = 118/265 (44%), Gaps = 52/265 (19%) Query: 123 SRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREV---------VQD 173 S + G ++E L+++ A + AG++FTPR +++ L+ + E + D Sbjct: 152 SNYEMGLVFEELIRRFAESSNETAGEHFTPRDIVRLTTSLVFMEDDEALTRDGIIRTIYD 211 Query: 174 PAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLL-- 231 P AGT GFL YV + + RAF G EL P + + + L+ Sbjct: 212 PTAGTGGFLSSGMEYVY-----------ELNPKAVMRAF-GQELNPESYAICKADMLIKG 259 Query: 232 HDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFG---SAAGTNIT-----RTF-- 281 D+ I+LGNTL +D K + +NPPFG T I + F Sbjct: 260 QDV-------SRIKLGNTLSNDQLYADKFDYMLSNPPFGVDWKKVETEINDEHTLKGFAG 312 Query: 282 -----VHPTSNKQLCFMQHIIETLHP----GGRAAVVVPDNVLFEGGKG---TDIRRDLM 329 + S+ L F+ H+I L GGR +++ + LF GG G ++IRR ++ Sbjct: 313 RFGPGLPRVSDGSLLFLMHLISKLRDTKDGGGRIGIILNGSPLFTGGAGSGESEIRRYIL 372 Query: 330 DKCHLHTILRLPTGIFYAQGVKTNV 354 + L I+ LPT +FY G+ T V Sbjct: 373 EADLLEAIVALPTDMFYNTGIATYV 397 >UniRef50_Q3J7Q6 N-6 DNA methylase n=7 Tax=Bacteria RepID=Q3J7Q6_NITOC Length = 661 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 81/315 (25%), Positives = 131/315 (41%), Gaps = 56/315 (17%) Query: 127 FGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHL--------LKPQPREVVQDPAAGT 178 G ++E L+++ A + AG++FTPR ++ L L P + DP AGT Sbjct: 156 MGIIFEELIRRFAESSNETAGEHFTPRDIVHLTTSLVITGQDDKLAPNRIVTIYDPTAGT 215 Query: 179 AGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLL--HDIEG 236 GFL E D Y++S + ++ + G EL P + + + L+ D+ Sbjct: 216 GGFLSEGDEYIQSISE------------KVSVSLHGQELNPESYAICKADMLIKGQDV-- 261 Query: 237 NLDHGGAIRLGNTLGSDGENLP--KAHIVATNPPFG---SAAGTNITRTFVHP------- 284 I+LGNTL +D P + + +NPPFG IT H Sbjct: 262 -----ANIKLGNTLSNDQLTGPEHRFDFMLSNPPFGVEWKKVQKQITGEHKHKGFNGRFG 316 Query: 285 -----TSNKQLCFMQHIIETLHP----GGRAAVVVPDNVLFEGGKG---TDIRRDLMDKC 332 S+ L F+ H++ + G R +++ + LF GG G ++IRR L+ Sbjct: 317 PGLPRVSDGSLLFLLHLVSKMRDPRDGGSRIGIILNGSPLFTGGAGSGESEIRRYLLQHD 376 Query: 333 HLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVY-DLRTNMPSFGKRT 391 + I+ LPT +FY G+ T V + A D + +R ++ S KR Sbjct: 377 LVEAIVALPTDMFYNTGIATYVWLLSNHKPAERRGKVQLIDGSQHFAKMRKSLGS--KRQ 434 Query: 392 PFTDEHLQPFERVYG 406 T E + +YG Sbjct: 435 YVTAEQINELVCLYG 449 >UniRef50_Q31IU5 Type I restriction-modification system, M subunit n=5 Tax=Bacteria RepID=Q31IU5_THICR Length = 709 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 74/297 (24%), Positives = 121/297 (40%), Gaps = 36/297 (12%) Query: 125 DDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIE 184 D FG +YE L + A + G++FTP +++ I+++++P +V DPA G+ G ++ Sbjct: 154 DIFGRIYEYFLTQFAGQGAHDGGEFFTPISIVQMIVNVIEPDHGKVF-DPACGSGGMFVQ 212 Query: 185 ADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAI 244 + V+S + L F G E T RLA MN +H +EG + G Sbjct: 213 SAHLVESMHKNPSQL----------LTFYGHEKNTTTTRLAKMNLQVHGLEGQIAGGNE- 261 Query: 245 RLGNTLGSD-GENL-PKAHIVATNPPFG----SAAGTNITRTFVH---------PTSNKQ 289 T D E L V NPPF A R V SN Sbjct: 262 --AITYYKDPHEGLWGDTDFVMANPPFNVDEVDADKIKNDRRLVFGLPGVNKNGKVSNGN 319 Query: 290 LCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQG 349 + + L GRA V+ GGK ++R++L+ H+ ++ + + FY + Sbjct: 320 YLWASYFYSYLSDTGRAGFVMSSQASSAGGKEAEVRKELVKTGHVDAMIDIRSNFFYTRS 379 Query: 350 VKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRT-PFTDEHLQPFERVY 405 V + F+ KG + + D V + D R ++ F+ E LQ ++ Sbjct: 380 VPCQLWFYNKG------KPQEHLDKVLMVDARNVFRKVTRKIYDFSLEQLQNLTSIF 430 >UniRef50_Q57168 Putative type I restriction enzyme HindVIIP M protein n=176 Tax=cellular organisms RepID=T1MH_HAEIN Length = 443 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 58/254 (22%), Positives = 110/254 (43%), Gaps = 26/254 (10%) Query: 116 YNG--AHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQD 173 YNG H ++D G +YE L + A +GQYFTP+ ++ I+ +L+P V D Sbjct: 83 YNGEPVHLGAKDILGHVYEYFLSRFAQAEGKRSGQYFTPKSIVSLIVEMLEPYSGRVY-D 141 Query: 174 PAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD 233 PA G+ GF ++ +R++ + +++++ + G E P T +LA MN + Sbjct: 142 PAMGSGGFFVQTERFITAHQGNINNV-----------SIYGQEFNPTTWKLAAMNMAIRG 190 Query: 234 IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRT-------FVHPTS 286 I+ + A D K + NP F N + P Sbjct: 191 IDYDFGKYNADSFTQPQHID----KKMDFIMANPHFNDKEWWNESLADDPRWAYGTPPKG 246 Query: 287 NKQLCFMQHIIETLHPGGRAAVVVPDNVL-FEGGKGTDIRRDLMDKCHLHTILRLPTGIF 345 N ++QH+I L P G+ A+++ + + + +IR+ +++ + ++ LP +F Sbjct: 247 NANFAWLQHMIYHLSPNGKIALLLANGSMSSQTNNEGEIRKAIINADLVECMVALPGQLF 306 Query: 346 YAQGVKTNVLFFTK 359 + + F + Sbjct: 307 TNTKIPACIWFLNR 320 >UniRef50_Q3ZWI3 Putative type I restriction-modification system methylation subunit n=1 Tax=Dehalococcoides sp. CBDB1 RepID=Q3ZWI3_DEHSC Length = 645 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 67/278 (24%), Positives = 122/278 (43%), Gaps = 41/278 (14%) Query: 125 DDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIE 184 D G+ YE L++ A+ +G+++TP+ + + +++PQP + + D A+G+ G L++ Sbjct: 159 DVLGNAYEYLIRNFASRAGKSSGEFYTPKEVAYLMSEIVEPQPGQSICDWASGSGGLLLQ 218 Query: 185 ADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAI 244 YV Q D D L Q+ + T ++ +N +LH ++ + +H Sbjct: 219 CRNYVTRQCKDPDRLLLYAQESNL-----------STYNISRINMILHGVK-SWEHRHQD 266 Query: 245 RLGNTLG-SDGENLPKAHIVATNPPFG-------SAAGTNITRTF---VHPTSNKQLCFM 293 L N L DG+ L K + NPPF G + F + P +N ++ Sbjct: 267 SLRNPLHVDDGKKLLKFDRIVMNPPFSLEDWGYDDFQGGDPFGRFGYGMPPRNNGDYAWL 326 Query: 294 QHIIETLHPGGRAAVVVPDNVLFEG---------GKGTD------IRRDLMDKCHLHTIL 338 +H++++L G+A VV+ VLF G G+ IR + + ++ Sbjct: 327 EHVLKSLKDTGKAIVVMSQGVLFRGQPEQTEEDDGRNQSADAEYVIREGFIKADAIECVI 386 Query: 339 RLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVW 376 LP+ +FY V ++ K P + KN +W Sbjct: 387 VLPSKLFYGNTVPGCLIIMNKN---KPPERKNKILMIW 421 >UniRef50_A5WF32 N-6 DNA methylase n=11 Tax=Proteobacteria RepID=A5WF32_PSYWF Length = 806 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 83/334 (24%), Positives = 135/334 (40%), Gaps = 71/334 (21%) Query: 126 DFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHL---------LKPQPREVVQDPAA 176 + G ++E L+++ A + AG++FTPR +++ L +K + DP A Sbjct: 165 EMGLVFEELIRRFAESSNETAGEHFTPRDIVRLTTSLVFMEDDDALIKDGIIRTIYDPTA 224 Query: 177 GTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEG 236 GT GFL YV + + RAF G EL P + + + L+ E Sbjct: 225 GTGGFLSSGMEYVLELNPN-----------AVMRAF-GQELNPESYAICKADMLIKGQEV 272 Query: 237 NLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFG----SAAGT----NITRTF------- 281 + I+LGNTL D K + +NPPFG AG + + F Sbjct: 273 S-----RIKLGNTLSDDQLPADKFDYMLSNPPFGVDWKKIAGEIKDEHEQKGFDGRFGPG 327 Query: 282 VHPTSNKQLCFMQHIIETLHP------------------------GGRAAVVVPDNVLFE 317 S+ L F+ H+I + P G R +++ + LF Sbjct: 328 TPRVSDGSLLFLLHLISKMRPVASPKRDSLELSNRSSEQQDTSVTGSRIGIILNGSPLFT 387 Query: 318 GGKGT---DIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDD 374 GG G+ +IRR +++ L I+ LPT +FY G+ T V T D Sbjct: 388 GGAGSGESEIRRYILESDLLEAIIALPTDMFYNTGIATYVWILTNHKAPERKGKVQLIDG 447 Query: 375 VWVYD-LRTNMPSFGKRTPFTDEHLQPFERVYGE 407 +Y +R ++ S KR ++E ++ R +G+ Sbjct: 448 TNLYSKMRKSLGS--KRNEMSEEDIKIITRTFGD 479 >UniRef50_C9RQV8 N-6 DNA methylase n=4 Tax=Bacteria RepID=C9RQV8_FIBSS Length = 624 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 66/247 (26%), Positives = 102/247 (41%), Gaps = 28/247 (11%) Query: 125 DDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIE 184 D G +YE L K A S G +FTP+ L+K I+++L+P V+ DPA G+ G + Sbjct: 166 DVMGRIYEYFLSKFAKNIASDDGVFFTPKSLVKMIVNVLEPS-YGVLLDPACGSGGMFV- 223 Query: 185 ADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAI 244 QT D + G + + F G E V +L LMN +H + G + G Sbjct: 224 -------QTGDFVNAAGMASNETM--TFYGQEKVEYNAQLCLMNMAVHGLTGVVKSGDE- 273 Query: 245 RLGNTLGSDGENLP-KAHIVATNPPF------GSAAGTNITRTFVHPTSNK-------QL 290 N+ D NL + V NPPF + + F P NK Sbjct: 274 --ANSFYHDAHNLTGQCDYVMANPPFNVDKVKAESCQSAGRLPFGLPAVNKDKEIGNGNY 331 Query: 291 CFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGV 350 ++ + L+ GRA V+ + K DIR L+ H+ ++ + FY + + Sbjct: 332 LWISYFYSYLNEKGRAGFVMAASATDSQSKDKDIREKLVATGHVDCMISVGNNFFYTKSL 391 Query: 351 KTNVLFF 357 + FF Sbjct: 392 PCTLWFF 398 >UniRef50_Q4HS21 Type I restriction-modification system, M subunit, putative n=3 Tax=Campylobacterales RepID=Q4HS21_CAMUP Length = 695 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 97/392 (24%), Positives = 171/392 (43%), Gaps = 66/392 (16%) Query: 5 DLVAKLWKLCDNLRDGGV-SYQNYVNELASLLFLKMCKETGQ-EAEYLPEGYRWDDLKSR 62 +L A L K+ + L +GG + +E + ++F KM E + + +Y E Y + K+R Sbjct: 177 ELEALLKKIHNYLWNGGKRNPAEAFSEFSKIIFTKMMDEKAKTDIKYKLEHYEFQ--KNR 234 Query: 63 IGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGK 122 E K + L E KK VF N I + +I LV N++ + G Sbjct: 235 --DEDKFALEKRIKGLYEKYKKKDSNVFDN--ALILDADEIKFLVENLEGI----GLSKI 286 Query: 123 SRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFL 182 D G++++ L+ + K AGQ+FTP +++ ++ ++V DP+ G+ GFL Sbjct: 287 ELDIKGEIFQNFLK---DFFKGKAGQFFTPFNVVRFVVGCFDITQNDLVLDPSCGSGGFL 343 Query: 183 IEADRYVKSQTNDLDDLDGDT--QDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDH 240 ++ +Y++ ++ L F + G+E+ G + A MN ++HD +G+ Sbjct: 344 LQTLQYMQEKSKKLKKKAQKRFWHSFA-EKNLYGIEINGGISQTAKMNMIIHD-DGH--- 398 Query: 241 GGAIRLGNTLGSDG----ENLPKA---------HIVATNPPFGSAAGT--------NITR 279 N + +DG EN + H + TNPPFGS+ + + Sbjct: 399 ------TNVITADGLDSFENFIRKNNKFQKNTFHFIFTNPPFGSSIPASKPYFEDFSFAK 452 Query: 280 TFVH--------------PTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIR 325 + VH ++ F++ E L GG A V+PD +L ++R Sbjct: 453 SEVHFIDKIIDKKSPKDLSGQKSEILFLERYFEFLKEGGIVACVLPDGIL-TNSSLQNVR 511 Query: 326 RDLMDKCHLHTILRLPTGIF--YAQGVKTNVL 355 L+++ +L LP F Y GVK+++L Sbjct: 512 DYLLERFYLLASFSLPQHTFSNYGAGVKSSIL 543 >UniRef50_C2RWF6 N-6 DNA methylase n=1 Tax=Bacillus cereus BDRD-ST24 RepID=C2RWF6_BACCE Length = 1009 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 83/339 (24%), Positives = 148/339 (43%), Gaps = 61/339 (17%) Query: 80 EDDKKLVQAVFHNVSTTIT----EPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLL 135 +D L+Q VF N + T ++I VS++D N D GD E L Sbjct: 92 QDQLVLIQEVFRNSNFTNNVQSGNLEEIIQAVSDLDEERLLNT------DLLGDAIESAL 145 Query: 136 QKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTND 195 + TK G + TP + ++ L++P + + DPA GT GFL + +V Sbjct: 146 SETGG-TKD-IGLFRTPDHIRHFMLGLVEPTINDTIFDPACGTGGFLFDGFEFVMESILK 203 Query: 196 LDDLDG------------------------DTQDFQIHRAFI-GLELVPGTRRLALMNCL 230 + G D + +R+ I G+E + R++A +N Sbjct: 204 EEKWPGTKAHPELQEWFKGYFNKTTVKFPSDEEALNFYRSGIYGIEYLGVIRKMAAVNFY 263 Query: 231 LHDIEG-NLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSA----AGTNITRTFVHPT 285 + + N+ G ++ + D ++ +V NPPFG+ A N+ + + Sbjct: 264 IRGLNPHNIQQGDSLAM-----FDQSSIKSKSVVLANPPFGAERDQEAYPNVWEDYSKES 318 Query: 286 SNKQLCFMQHIIETLHPGGRAAVVVPDNVL-FEGGKGTDIRRDLMDKCHLHTILRLPTGI 344 L F++ ++++L GG+ AVVV + L +E G +R+ ++++ L ++ LP G+ Sbjct: 319 ETTTL-FVKLMLDSLKDGGKCAVVVSEGFLTWEQGSAKALRKLILEEAKLIGVIGLPQGV 377 Query: 345 FYAQ---GVKTNVLFFTKGTVANPNQDKNCTDDVWVYDL 380 F ++ G KT++LFF KG T++VW Y + Sbjct: 378 FVSKTGIGPKTSILFFEKG---------KPTENVWFYQV 407 >UniRef50_C7NHN8 Type I restriction-modification system methyltransferase subunit n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NHN8_KYTSD Length = 663 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 70/284 (24%), Positives = 119/284 (41%), Gaps = 50/284 (17%) Query: 102 QITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIH 161 +++A+V +LD + S + GD++E L+++ +K AG YFTPR +++ ++ Sbjct: 141 RLSAVVKEFAALDVH--PDRVSNAEMGDVFEELIRRFMEASKDVAGDYFTPREVVRLMVS 198 Query: 162 LL---------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAF 212 LL P V DP GT G L EA +++ Sbjct: 199 LLFSPDTEDLSDPHLIRQVYDPTCGTGGMLSEAHEWMREHNG------------HATLNL 246 Query: 213 IGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFG-- 270 G E + +A + ++ + I G+TL DG +NPPFG Sbjct: 247 FGQEFNALSYAMAKADLIIKKQDAQ-----NIFFGDTLLVDGHEGKTFSYCISNPPFGQD 301 Query: 271 -----SAAGTNITR--------TFVHPTSNKQLCFMQHIIETLHP----GGRAAVVVPDN 313 A R + ++ + F+QH++ + P GGR A+V+ + Sbjct: 302 WKVQEKAVKAERERDGDEGRFAAGLPSVNDGAMLFLQHLVSKMRPAAQGGGRGAIVLNGS 361 Query: 314 VLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNV 354 LF G G ++IRR L++ + I+ LPT +FY G+ T + Sbjct: 362 ALFTGSAGQGPSEIRRHLLENDLVDAIIGLPTDLFYNTGIATYI 405 >UniRef50_C9KRW2 Type I restriction-modification system, M subunit n=5 Tax=Bacteroides RepID=C9KRW2_9BACE Length = 507 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 62/244 (25%), Positives = 115/244 (47%), Gaps = 27/244 (11%) Query: 125 DDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIE 184 D+ G YE L+ K A++ + A +++T R +++ + +L+PQP E + DP G+ G L++ Sbjct: 169 DEMGQAYEYLVGKFADDAGNTAQEFYTNRTVVQLMAEILQPQPNESIYDPTCGSGGMLVK 228 Query: 185 ADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAI 244 Y++++ + Q Q+ G E+ T +A MN L+ IE + A Sbjct: 229 CLDYLRNK-------GAEWQSVQV----FGQEVNGLTSSIARMNLYLNGIE-DFSIACAD 276 Query: 245 RLGNTLGSDGENLPKAHIVATNPPFGSAA-----------GTNITRTFVHPTSNKQLCFM 293 L N DG +L K IV NPP+ G N T P F+ Sbjct: 277 TLENPAFLDGSHLRKFDIVLANPPYSIKEWNREKFMNDKWGRNFLGT--PPQGRADYAFI 334 Query: 294 QHIIETL-HPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKT 352 QHI+ ++ GR A+++P VL + +RR L+++ + +++ + +F+ ++ Sbjct: 335 QHILASMDEKTGRCAILLPHGVLNRMEEEI-MRRKLIEEDLVDSVISIGKNLFFNSPMEA 393 Query: 353 NVLF 356 ++ Sbjct: 394 CIML 397 >UniRef50_D2NY13 Type I restriction enzyme M protein n=5 Tax=Listeria RepID=D2NY13_LISMO Length = 529 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 69/260 (26%), Positives = 108/260 (41%), Gaps = 36/260 (13%) Query: 123 SRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL----KPQPREVVQDPAAGT 178 S D D+YE L+ + A S GQY+TP+ + + +L + + + DP G+ Sbjct: 164 SNDTVSDIYEYLVAQFATVLASDMGQYYTPKEISNVMARILTFGREDMEKFSIFDPTVGS 223 Query: 179 AGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNL 238 L+ Y+K+ G + + G E RL+ MN ++H IE N Sbjct: 224 GSLLLTTASYMKNSGRR-----GVIK-------YYGQEKDATPYRLSRMNLMMHGIEYN- 270 Query: 239 DHGGAIRLGNTLGSD-------GENLPKAH-IVATNPPFGSAAGTNITRT--------FV 282 I +TL SD G++ P+ V NPP+ SA N R V Sbjct: 271 --DININHADTLESDWPDGVVEGKDTPRMFDAVMANPPY-SAHWNNKDREDDPRWREYGV 327 Query: 283 HPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPT 342 P + F+ H + L GR A+++P VLF G IR+ L+DK + I+ P Sbjct: 328 SPKTKADYAFLLHCLYHLEDNGRMAIILPHGVLFRGASEGRIRKALIDKHQIEAIIGFPD 387 Query: 343 GIFYAQGVKTNVLFFTKGTV 362 +F + V+ K + Sbjct: 388 KLFLNTSIPVCVVILRKNRI 407 >UniRef50_C6MIL3 N-6 DNA methylase n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MIL3_9PROT Length = 549 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 75/326 (23%), Positives = 137/326 (42%), Gaps = 36/326 (11%) Query: 49 YLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDD----KKLVQAVFHNVSTTITEPKQIT 104 ++P RW L + Q + + + E + K ++ V+ + T ++ Sbjct: 81 FVPAESRWPHLVAHARQPDIGTHVDAAMDAIEKENPSLKGVLPKVYARQNLDPTSLGELI 140 Query: 105 ALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLK 164 L+ N+ D A +S+D G ++E L + A GQ++TPR +++ ++++L+ Sbjct: 141 DLIGNIALGD----AKARSQDVLGHVFEYFLGEFALAEGKQGGQFYTPRSIVELLVNMLE 196 Query: 165 PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRL 224 P V DP G+ G ++++++V+ +DD+ + G E T RL Sbjct: 197 PYQGRVF-DPCCGSGGMFVQSEKFVEEHQGRIDDI-----------SIYGQESNQTTWRL 244 Query: 225 ALMNCLLHDIEGNLDHGGAIRLGN--TLGSDGENLPKAHIVATNPPFGSA-------AGT 275 A MN + I+ + ++ N + +D KA + NPPF + G Sbjct: 245 AKMNLAIRGIDSS-----QVKWNNEGSFLNDAHKDLKADFIIANPPFNVSDWSGEQLRGD 299 Query: 276 NITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGT-DIRRDLM-DKCH 333 + P N ++QH I L P G A VV+ L G DIR+ L+ D Sbjct: 300 ARWQYGTPPPGNANFAWLQHFIYHLSPTGIAGVVLAKGALTSKTSGEGDIRKRLITDGNL 359 Query: 334 LHTILRLPTGIFYAQGVKTNVLFFTK 359 + I+ LP +F + + F + Sbjct: 360 IDCIVNLPAKLFLNTQIPAALWFLNR 385 >UniRef50_A6EJ97 Type I restriction-modification system methyltransferase subunit n=1 Tax=Pedobacter sp. BAL39 RepID=A6EJ97_9SPHI Length = 633 Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 77/291 (26%), Positives = 122/291 (41%), Gaps = 47/291 (16%) Query: 123 SRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL----------KPQPREVVQ 172 S D G ++E L+++ AG +FTPR +IK +++LL K R+++ Sbjct: 123 SNRDMGLIFENLIRRFNELANETAGDHFTPREIIKLMVNLLFVDDDKFLRDKYHLRKIL- 181 Query: 173 DPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLH 232 DP GT G L EA Y+K +D+ L + + A +L+ R Sbjct: 182 DPTCGTGGMLSEAKNYLKQNNSDIILLTYGQEYNKRAYATAASDLLIKGRS--------S 233 Query: 233 DIEGNLDHG-GAIRLGNTLGSDGENLPKAHIVATNPPFG---SAAGTNITR-------TF 281 D G + G I+ G+TL D + NPPFG I R Sbjct: 234 DKVGKYEQAEGEIKFGDTLTEDQFEDDTFDYLIANPPFGVDWKKQKPQIDRDKTGRFEAG 293 Query: 282 VHPTSNKQLCFMQHIIETLHP--------GGRAAVVVPDNVLFEGGKG---TDIRRDLMD 330 + ++ L F+QH+I P G R A+V + +F GG G +DIR+ +++ Sbjct: 294 LPRVNDGALLFLQHMISKFEPYEPKNKKFGSRLAIVFSGSPMFSGGAGSGESDIRKWIIE 353 Query: 331 KCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLR 381 L I+ LP +FY G+ T + T + KN + ++D R Sbjct: 354 NDWLEGIIALPEQMFYNTGINTYIWVLTN------RKSKNRKGKIQLFDAR 398 >UniRef50_Q7NAH5 HsdM n=1 Tax=Mycoplasma gallisepticum RepID=Q7NAH5_MYCGA Length = 884 Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 91/378 (24%), Positives = 149/378 (39%), Gaps = 67/378 (17%) Query: 57 DDLKSRIGQEQLQFYRKMLVHLGEDDKKL---VQAVFHNVSTTITEPKQITALVSNMDSL 113 DDL ++ F R +L E K + +QA + T E + + N+ Sbjct: 114 DDLSDKVSTALNSFERSILEKYEESFKDIFKDLQAGIQKLGNTAYERSEAIWNICNL--- 170 Query: 114 DWYNGAHGKSRDDF---GDMYEGLLQKNANETKSGAGQYFTPRPL--IKTII--HLLKPQ 166 N S+ D+ G +YE L+ A AG+++TP + + ++I + LK Sbjct: 171 --INKIPITSKQDYDILGFVYEYLISMFAANAGKKAGEFYTPHEVSQLMSVIAANHLKGL 228 Query: 167 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLAL 226 + DP +G+ LI R +K D + + E++ T + Sbjct: 229 KNVSIYDPTSGS--LLITLGRELKKI------------DKNVKIQYYAQEVIDTTYNITR 274 Query: 227 MNCLLHDIEGNLDHGGAIRLGNTLGSD--------GENLPKAHIVATNPPFGSAAGTNIT 278 MN L++D+ + G+TL D + V +NPP+ A T Sbjct: 275 MNLLMNDVHS---VNMFAKCGDTLKEDWPFVYEEQKYKSKRTDAVVSNPPYSLAWNTENK 331 Query: 279 ------RTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKC 332 R + P S +L F+ H + L G +V+P VLF GG IR++L+ Sbjct: 332 ENDPRFRYGLAPKSKSELAFLLHSLYHLEDHGILTIVLPHGVLFRGGSELQIRQNLISHD 391 Query: 333 HLHTILRLPTGIFYAQGV---------------KTNVLFFTKGTVANPNQDKN---CTDD 374 H+ I+ LP+ IF+ G+ K NVLF +KN +D Sbjct: 392 HIDAIIGLPSNIFFGTGIPTIIMVLKRSKTKKEKNNVLFIDASKYFTKEGNKNKLQSSDI 451 Query: 375 VWVYD---LRTNMPSFGK 389 V +YD R ++P F + Sbjct: 452 VRIYDAFSAREDIPGFAR 469 >UniRef50_P75436 Putative type I restriction enzyme MpnORFDP M protein n=2 Tax=Bacteria RepID=T1MD_MYCPN Length = 543 Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 70/287 (24%), Positives = 127/287 (44%), Gaps = 36/287 (12%) Query: 94 STTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153 ST +++ L++++D+++ + S D FGD YE L+ A G++FTP+ Sbjct: 155 STLTIRTEKLKELLTSIDTMEL-DEFEKNSIDAFGDAYEFLISMYAQNAGKSGGEFFTPQ 213 Query: 154 PLIKTI--IHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRA 211 + + + I + K + V D A G+ L++ + + + L + Sbjct: 214 DISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGKEKTSL-------------VS 260 Query: 212 FIGLELVPGTRRLALMNCLLHDIE-GNLDHGGAIRLGNT------LGSDGENLPKAHIVA 264 + G E+ T L MN +LH+I+ N + A L + EN +V Sbjct: 261 YYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWEKHYVNCSNEN--GFEVVV 318 Query: 265 TNPPFG-SAAG---TNITRTF-------VHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN 313 +NPP+ S AG +N+ + P S L F+ H + L G AA+V Sbjct: 319 SNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCFPG 378 Query: 314 VLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 360 +L+ GK IR+ L+D+ + +++LP+ +F + T++L K Sbjct: 379 ILYREGKEQTIRKYLVDQNFVDAVIQLPSNLFSTTSIATSILVLKKN 425 >UniRef50_Q1Q861 N-6 DNA methylase n=1 Tax=Psychrobacter cryohalolentis K5 RepID=Q1Q861_PSYCK Length = 526 Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 99/415 (23%), Positives = 166/415 (40%), Gaps = 75/415 (18%) Query: 6 LVAKLWKLCDNLR-DGGVSYQNYVNELASLLFLKMCK------------------ETGQE 46 L + LW DNLR + ++ Y + L L+FL+ + TGQ+ Sbjct: 8 LESDLWNAADNLRANSTLTAAEYKDPLLGLVFLRFVQNRHEDAKVKIQESLAINPRTGQK 67 Query: 47 AEY------------LPEGYRWDDLKSRIGQEQL-QFYRKMLVHLGEDDKKLVQAVFHNV 93 E LPE ++D L + E + + + + E+ LV + N Sbjct: 68 REVTKDDFVAAGSILLPEKAKYDYLAALPESENIAEAINNAMKLIEEEYPSLVGILPKNY 127 Query: 94 STTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSG--AGQYFT 151 + + V N D++ G D FG +YE L K + + G++FT Sbjct: 128 QVFDNKLLRDLVRVFNKDAVRKAKG------DIFGRIYEFFLMKFSMQGAGAQEGGEFFT 181 Query: 152 PRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRA 211 P L+ I++ ++P ++ DPA G+ G ++ +++ G + ++ A Sbjct: 182 PPSLVNLIVNFIQPD-HGIIHDPACGSGGMFVQTAHFIQ----------GHMPNKSVNEA 230 Query: 212 FI--GLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLP-KAHIVATNPP 268 G EL +LA MN +H IEG AI N+ ++ +L K V NPP Sbjct: 231 ITVYGTELKSNNTKLAKMNLAVHGIEG------AIIESNSFYTNPHDLNGKCDFVMANPP 284 Query: 269 FGSAA--GTNITRT------FVHPTS------NKQLCFMQHIIETLHPGGRAAVVVPDNV 314 F + G N T F P + N ++Q+ L+ GRA V+ + Sbjct: 285 FNVSGIDGKNKFLTEDARLPFGAPLTKGGTIGNGNYLWIQYFHSYLNKTGRAGFVMASSA 344 Query: 315 LFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDK 369 G IR+ L++ + I+ + FY + + +V FF K A N+DK Sbjct: 345 TDAGHAEKLIRQQLIETGDVECIVSIANNFFYTRSLPCHVWFFNKEKKAE-NKDK 398 >UniRef50_A6EUA8 Type I restriction-modification n=1 Tax=unidentified eubacterium SCB49 RepID=A6EUA8_9BACT Length = 600 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 68/270 (25%), Positives = 122/270 (45%), Gaps = 49/270 (18%) Query: 116 YNGAHGKSRD--DFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQ- 172 + G +S D + G ++E L+++ A ++ AG++FTPR +IK ++++L + E++ Sbjct: 143 FQGIKLESMDSMEMGYVFEDLIRRFAEQSNETAGEHFTPREVIKLMVNMLFNEDSEILTK 202 Query: 173 --------DPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRL 224 DPA GT G L +++VK +L+ + + G E+ P + + Sbjct: 203 EGIVKTLYDPACGTGGMLSVGEQHVK-------ELNPNAE-----LKVFGQEINPESYAI 250 Query: 225 ALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGS--AAGTNITRTFV 282 + L+ + ++ GNT DG + + +NPPFG I + Sbjct: 251 CKSDMLIKG-----QNPSNVKFGNTFTVDGLEDEQFDYMLSNPPFGVDWKKAQKIIKA-E 304 Query: 283 HPTSNKQ--------------LCFMQHIIETLHPGG-RAAVVVPDNVLFEGGKG---TDI 324 H Q L F+QH+I + P G R A+V + LF G G ++I Sbjct: 305 HENKGMQGRFGAGLPRINDGSLLFLQHMISKMKPSGTRIAIVFNGSPLFSGSAGSGESEI 364 Query: 325 RRDLMDKCHLHTILRLPTGIFYAQGVKTNV 354 R+ +++ L I+ +P +FY G+ T V Sbjct: 365 RKWIIENDWLEAIVAMPDQLFYNTGISTYV 394 >UniRef50_Q31PC9 Type I restriction-modification n=27 Tax=cellular organisms RepID=Q31PC9_SYNE7 Length = 675 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 80/316 (25%), Positives = 138/316 (43%), Gaps = 51/316 (16%) Query: 123 SRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL---------KPQPREVVQD 173 S + G ++E L++K A + AG++FTPR +I+ +++LL +P + D Sbjct: 244 SNAEMGLVFEELIRKFAELSNETAGEHFTPREVIRLMVNLLFIEDDAALTQPGIVRSLYD 303 Query: 174 PAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD 233 P AGT G L A+ + L +L+ + G EL P + + + L+ Sbjct: 304 PTAGTGGMLSVAEEH-------LTELNPSAR-----LVLSGQELNPESYAICKADMLIKG 351 Query: 234 IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFG------------SAAGTNITRTF 281 N+ + I GNTL D K + +NPPFG A + F Sbjct: 352 --QNIQN---ICFGNTLSDDKLPDAKYDYMLSNPPFGVEWKKIQKEVQREAEQLGYSGRF 406 Query: 282 ---VHPTSNKQLCFMQHIIETLHP----GGRAAVVVPDNVLFEGGKG---TDIRRDLMDK 331 + S+ L F+ H+I + P G R +V+ + LF GG G ++IRR +++ Sbjct: 407 GPGLPRVSDGSLLFLLHLISKMRPASEGGSRLGIVLNGSPLFTGGAGSGESEIRRYVLEN 466 Query: 332 CHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYD-LRTNMPSFGKR 390 + I+ LPT +FY G+ T + + A+ D + +R ++ S KR Sbjct: 467 DLVEAIIALPTDMFYNTGISTYIWILSNRKPASRKGKVQLIDASGFWQKMRKSLGS--KR 524 Query: 391 TPFTDEHLQPFERVYG 406 ++E + R++G Sbjct: 525 KELSEEQIAEITRLFG 540 >UniRef50_A8YEM4 Genome sequencing data, contig C300 n=4 Tax=Bacteria RepID=A8YEM4_MICAE Length = 1193 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 65/254 (25%), Positives = 111/254 (43%), Gaps = 38/254 (14%) Query: 147 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTND-LDDLDGDTQD 205 GQYFTPR ++K I+ +L Q +V D + G+ GFL+ A V+++ ++ + + ++ Sbjct: 325 GQYFTPRQIVKFIVDVLPIQHNSLVLDTSCGSGGFLLHALEKVRTEADEYYPNYQTNPKE 384 Query: 206 FQIHRA---------FIGLELVPGTRRLALMNCLLHDI-EGNLDHGGAIRLGNTLGSDGE 255 + H G+E+ R+A MN ++HD N+ +R L E Sbjct: 385 YNQHYQHWHNFAQSNLFGIEINEQIARVAKMNMIIHDDGHTNVIAADGLRDSEDLIKRTE 444 Query: 256 N----LPKAHIVATNPPFGSAAGTN--------------------ITRTFVHPTSNKQLC 291 N + + TNPPFGS +RT + + ++ Sbjct: 445 NKGFTYNRFDFIITNPPFGSVIKQTEQAYISQYSFAMKAVDWLNPKSRTTERDSQSTEVL 504 Query: 292 FMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYA--QG 349 F++ L GG A+VVPD +L +R + +K + ++ +P F A G Sbjct: 505 FLEQCHRFLKEGGYLAMVVPDGILTNSSLQY-VREGIEEKYRIVAVVSMPQTAFSATGAG 563 Query: 350 VKTNVLFFTKGTVA 363 VK++VLF K + A Sbjct: 564 VKSSVLFLKKHSQA 577 >UniRef50_B1VGZ7 Type I restriction-modification system, methyltransferase subunit n=2 Tax=Corynebacterium RepID=B1VGZ7_CORU7 Length = 644 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 74/260 (28%), Positives = 111/260 (42%), Gaps = 50/260 (19%) Query: 127 FGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQ---------PREVVQDPAAG 177 GD++E ++ K + AG ++TPR I+ ++ +L V DP AG Sbjct: 158 MGDLFEHVMYKAFDTKGKAAGAFYTPRDAIRLMVDILFASDDVGLTAEGASRTVYDPTAG 217 Query: 178 TAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN 237 T G L+ A R +K D I G EL+ + + L+ E + Sbjct: 218 TGGMLLVAARALKELNPD------------IEVVLAGQELMSTGYAIGKADLLIQGGEPD 265 Query: 238 LDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGS-----------AAGTNITRTFVHPTS 286 AIR G+TL +D + + +NPPFG+ A +R F H Sbjct: 266 -----AIRHGDTLLTDLYEGEQFEYILSNPPFGTDWEVQQQSVKEQAKVPGSR-FSHGLP 319 Query: 287 NK---QLCFMQHIIETLHP------GGRAAVVVPDNVLFEGG--KGTD-IRRDLMDKCHL 334 +K Q+ F+ H+ L P GGR AVV + LF G G D IR L++ + Sbjct: 320 SKDDGQMLFLAHVASKLMPAGPNGAGGRGAVVSNGSPLFTGAPESGPDKIRAWLLENDLV 379 Query: 335 HTILRLPTGIFYAQGVKTNV 354 I++LPT +FY G+ T V Sbjct: 380 DAIIQLPTNMFYGTGISTYV 399 >UniRef50_Q5M500 Type I restriction-modification system methyltransferase subunit n=23 Tax=Firmicutes RepID=Q5M500_STRT2 Length = 534 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 81/324 (25%), Positives = 129/324 (39%), Gaps = 53/324 (16%) Query: 101 KQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIK--T 158 + + A++ + LD G + D GD YE L+ + A ++ AG+++TP+P+ K T Sbjct: 155 QTVAAVMKELAVLD----VAGHAGDMLGDAYEYLIGQFATDSGKKAGEFYTPQPVAKLMT 210 Query: 159 IIHLLKPQPRE--VVQDPAAGTAGFLIEADRYVKS-QTNDLDDLDGDTQDFQIHRAFIGL 215 I L + ++ + D G+ L+ A RY + QT + G Sbjct: 211 QIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQT----------------VVYFGQ 254 Query: 216 ELVPGTRRLALMNCLLHD--IEGNLDHGGAIRLGNTLGSDGENLPKAHI--VATNPPFGS 271 EL T LA MN +LH IE H +TL D + V NPP+ + Sbjct: 255 ELNTSTYNLARMNMILHGVPIENQFLHNA-----DTLDEDWPTQEPTNFDGVLMNPPYSA 309 Query: 272 ----AAGTNITRTF-----VHPTSNKQLCFMQHIIETL-HPGGRAAVVVPDNVLFEGGKG 321 ++G F + P S F+ H L G A+V+P VLF G Sbjct: 310 KWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHGVLFRGNAE 369 Query: 322 TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLR 381 IR+ L+++ + T++ LP IF+ + T V+ K DV+ D Sbjct: 370 GTIRKALLEEGAIDTVIGLPANIFFNTSIPTTVIILKKN---------RTNRDVYFIDAS 420 Query: 382 TNMPSFGKRTPFTDEHLQPFERVY 405 + TD H++ Y Sbjct: 421 KEFDKGKNQNIMTDAHIEKILNAY 444 >UniRef50_C9KUR0 Putative type I restriction-modification system, M subunit n=1 Tax=Bacteroides finegoldii DSM 17565 RepID=C9KUR0_9BACE Length = 368 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 71/281 (25%), Positives = 125/281 (44%), Gaps = 53/281 (18%) Query: 128 GDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADR 187 G YE ++ +N K AGQ+FTPR +IK ++ +L P V DPA G+ GFL+ Sbjct: 3 GTAYETIV---SNTLKQEAGQFFTPRNIIKCMVEMLDPDQNTRVLDPACGSGGFLVTVLD 59 Query: 188 YVKSQTN-----DLD-----------DLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLL 231 +V+ + +LD ++D +++ + G + P ++ A MN ++ Sbjct: 60 HVRHKITRNLYPELDEVRLAARVNTPEVDELVRNYA-EKMIFGFDFDPDLKKAARMNMVM 118 Query: 232 H-DIEGN------LDHGGAIRLGNTLGSDGENLPKAH--------------------IVA 264 D N LD+ + +L ++ N H ++ Sbjct: 119 AGDGHSNIFNINSLDYPQGDKPDRSLIAEAVNESIKHSNDKDFPFGTSEDNAQGKFDMIF 178 Query: 265 TNPPFGSAAGTN--ITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGT 322 TNPPFG+ + I R + ++ ++ F++ L PGG+ +V+PD +L G T Sbjct: 179 TNPPFGAKVEVDVEIARRYKLNSNAPEILFIEACYNFLKPGGKMGIVLPDGIL--GNPNT 236 Query: 323 D-IRRDLMDKCHLHTILRLPTGIFYAQ-GVKTNVLFFTKGT 361 + +R+ ++ L + LP F Q GV+ ++LF K T Sbjct: 237 ESVRKWILGHFKLLASVDLPVETFLPQVGVQASLLFLQKKT 277 >UniRef50_C5RYW3 Type I restriction-modification system methyltransferase subunit like protein n=5 Tax=Bacteria RepID=C5RYW3_9PAST Length = 533 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 88/357 (24%), Positives = 147/357 (41%), Gaps = 42/357 (11%) Query: 49 YLPEGYRWDDLKSRIGQEQLQF-YRKMLVHLGEDDKKLVQAVFHNVSTTI-TEPKQITAL 106 YL E RW + + + + + E + L A+ N T+ K+I +L Sbjct: 82 YLSEHARWSYIVENASSDDIAIKIDTAMADIEERNPPLKGALPQNFYATLGIGKKEIKSL 141 Query: 107 VSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGA--GQYFTPRPLIKTIIHLLK 164 + ++ LD N H K D G + E LQ A ++ G G+++TP +++ I L++ Sbjct: 142 IDEINKLD-NNRFHEK--DLIGRVQEYFLQVFAIDSGVGKEKGEFYTPSSIVELIAELIE 198 Query: 165 PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRL 224 P V DP GT G +++ ++V++ G+ ++ I +G E P T RL Sbjct: 199 PY-NGTVYDPCCGTGGMFVQSLKFVENH-------QGNRKNISI----VGQESNPDTWRL 246 Query: 225 ALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTN-------- 276 A MN L I NL +T D K + + NPPF + Sbjct: 247 AKMNLALRGIAHNLGESAV----STFTHDQWKDLKVNYIMANPPFNLKDWRDQNELTDDP 302 Query: 277 -ITRTFVHPTSNKQLCFMQHIIETL-HPGGRAAVVVPDNVLFEGGKGTD------IRRDL 328 V P SN ++ H++ L G A ++ + L GG D IR+ L Sbjct: 303 RFAGYAVPPKSNANYAWILHMLSKLDETDGIAGFLLANGALNTGGDKPDTDTEYAIRKQL 362 Query: 329 MDKCHLHTILRLPTGIFYAQGVKTNVLFFT---KGTVANPNQDKNCTDDVWVYDLRT 382 ++ + I+ LP +FY+ + + K N Q +N +++ DLRT Sbjct: 363 IENDKVEAIIVLPREMFYSTDISVTLWIVNNNKKQRSLNGRQLRNRQNEILFMDLRT 419 >UniRef50_B5GUA5 N-6 DNA methylase n=1 Tax=Streptomyces clavuligerus ATCC 27064 RepID=B5GUA5_STRCL Length = 814 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 69/246 (28%), Positives = 107/246 (43%), Gaps = 32/246 (13%) Query: 124 RDDFGDMYEGLL-QKNANETKSGAGQYFTPRPLIKTIIHLLKP--QPREVVQDPAAGTAG 180 R++ +++ LL + + + G++FTPR + +T+ LL P E V DP Sbjct: 237 REECAAVFDLLLDHYRSTQGRRDGGEFFTPRSVARTMARLLAAAGHPPERVHDPFCRAGE 296 Query: 181 FLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLAL--MNCLLHDIE-GN 237 L T L +L + A PG LAL MN LH E Sbjct: 297 VL----------TALLAELPAQAEPLVTGSA-------PGVDALALARMNLTLHGAEEAA 339 Query: 238 LDHGGAIRLGNTLGSDGENLPKAHIVATNPPFG----SAAGTNITRTFVH--PTSNKQLC 291 L H + + + GE A VATNPPFG A R + + P S L Sbjct: 340 LRH--RMEIEDPFAGPGEGH-GADWVATNPPFGFKLSDEARERWGRPWPYGPPGSRGDLA 396 Query: 292 FMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVK 351 ++QH++E+L PGGRAAVV+P+ F GG+ +R ++ + ++ LP +F + Sbjct: 397 WLQHVVESLAPGGRAAVVMPNGAGFAGGRAQTVRARMVHDGVVECVMELPPHLFSDTAIP 456 Query: 352 TNVLFF 357 ++ Sbjct: 457 VSIWML 462 >UniRef50_Q47GH6 N-6 DNA methylase n=13 Tax=cellular organisms RepID=Q47GH6_DECAR Length = 529 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 94/405 (23%), Positives = 165/405 (40%), Gaps = 63/405 (15%) Query: 1 MNNNDLVAKLWKLCDNL-RDGGVSYQNYVNELASLLFLKMCKETGQEAE--YLPEGYRWD 57 +N DL ++LW D L + G+ + N + L+FL+ ++ EAE + G Sbjct: 17 INLQDLESRLWSAADQLWANTGLKPSEFSNPVLGLIFLRYAEKRFHEAEAKLVAGGLEVS 76 Query: 58 DLKSRIGQEQLQFYRKMLVHLGEDDK---KLVQAVFHNVSTTITEPKQITALVSNMDSLD 114 D+ E+ + + ++L E + L A H++ I E + A+ ++ D L Sbjct: 77 DI------EKFDYQAEGALYLPETARFTYLLDLAEGHDIGKAINEA--MAAVEADNDELK 128 Query: 115 WY--------------------NGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRP 154 NG D FG +YE L K A G ++TP Sbjct: 129 GVLPRSYGKVENRVLVELLRLLNGLGEIEGDAFGKIYEYFLGKFALAEGQKGGVFYTPTS 188 Query: 155 LIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYV-KSQTNDLDDLDGDTQDFQIHRAFI 213 ++K I+ +++P ++ DPA G+ G +++ +V + + ++L Sbjct: 189 IVKLIVEIIEPFHGQIF-DPACGSGGMFVQSAMFVGRHKKRAAEEL-----------TVF 236 Query: 214 GLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSD-GENLPKAHIVATNPPFGSA 272 G E T +LA MN +H + G+ +R NT D + + + V NPPF + Sbjct: 237 GTEKSNDTVKLAKMNLAVHGLSGD------VRESNTYYEDPHKAVGRFDFVMANPPF-NV 289 Query: 273 AGTNITRT-------FVHPTS-NKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDI 324 +G + R F PT+ N ++Q L+ GRA V+ ++ G +I Sbjct: 290 SGVDKERIKDDPRFPFGVPTTDNANYLWIQLFYSALNNTGRAGFVMANSAGDARGAELEI 349 Query: 325 RRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDK 369 R+ L+ L I+ + FY + + FF K +DK Sbjct: 350 RKKLILSGGLEAIVSVGPNFFYTVTLPCTLWFFDKTKAKRERKDK 394 >UniRef50_A3D8X6 Type I restriction-modification system, M subunit n=22 Tax=Bacteria RepID=A3D8X6_SHEB5 Length = 547 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 67/261 (25%), Positives = 110/261 (42%), Gaps = 42/261 (16%) Query: 125 DDFGDMYEGLLQKNANETKSGAGQYFTPRPL---IKTIIHLLKPQPREVVQDP------- 174 D GD YE L+ + A + AG+++TP+P+ + I+ L +P+ + Sbjct: 180 DILGDAYEYLIGEFAAGSGKKAGEFYTPQPISTILSEIVTLDSQEPKTGKKKKLDKVLDF 239 Query: 175 AAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI 234 A G+ L+ +++ + + G ++ T LA MN LLH + Sbjct: 240 ACGSGSLLLNVRKHIVDAGGTVGKIYGQEKNIT-------------TFNLARMNMLLHGV 286 Query: 235 EGNLDHGGAIRLGNTLGSDGENLP--------KAHIVATNPPFG-----SAAGTNITRTF 281 + D I G+TL +D + L K V NPPF S A R Sbjct: 287 K---DTEFEIHHGDTLLNDWDILSEMNPAKKLKCDAVVANPPFSYRWDPSEAQGEDFRFK 343 Query: 282 VH---PTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTIL 338 H P S F+ H L G A+++P VLF GG IR+ L++ H+ T++ Sbjct: 344 SHGLAPKSAADFAFLLHGFHFLSDEGTMAIILPHGVLFRGGAEQRIRKKLLNDGHIDTVI 403 Query: 339 RLPTGIFYAQGVKTNVLFFTK 359 LP +F++ G+ ++ K Sbjct: 404 GLPANLFFSTGIPVCIIVLKK 424 >UniRef50_A8ZRN8 N-6 DNA methylase n=14 Tax=cellular organisms RepID=A8ZRN8_DEIGD Length = 610 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 86/349 (24%), Positives = 144/349 (41%), Gaps = 52/349 (14%) Query: 49 YLPEGYRWDDLKSRIGQEQLQFYRKMLVH------LGEDDKKLVQAVF-HNVSTTIT--- 98 YLP RW + G+E + R + +GE + V+AV HN S + Sbjct: 166 YLPPEARWTVIS---GREPFDWPRDVQGRSTAPRDIGEHLTRAVRAVVKHNPSLSGVIDV 222 Query: 99 -------------EPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSG 145 P ++ +V + G D G YE LL+K A + Sbjct: 223 VDFAAERNGERDINPAKLRGVVETFSDPRYRLGLADVQPDFLGRAYEYLLRKFAEGSGQS 282 Query: 146 AGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQD 205 AG++FTP + + H+L+P+P E D A G+AG LI+ + +LD + Sbjct: 283 AGEFFTPTEVGFLMAHILRPKPGETCHDYACGSAGLLIKLQLVAR-------ELDPTS-- 333 Query: 206 FQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVAT 265 ++ G EL + +A MN ++HD+E L G + +DG ++ + IV Sbjct: 334 -RVPLKLSGQELQAESYAVAQMNAIIHDMEVELARGDTMINPKFRNADG-SIRQHDIVVA 391 Query: 266 NPPFGSAAGTNI--------TRTFVHPTSNK-QLCFMQHIIETLHPGGRAAVVVPDNVLF 316 NP + + +I RT TS K ++QH + ++ GRAAVV+ + Sbjct: 392 NPMWNQSFAPDIFAHDPFDRFRTAGGITSGKGDWAWLQHTLACMNDHGRAAVVLDTGAVT 451 Query: 317 EGG------KGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTK 359 G K IR+ +++ + ++ LP +FY ++ K Sbjct: 452 RGSGSKNEDKERTIRKWFVEQDLIDGVILLPENLFYNTTAAGVIVVLNK 500 >UniRef50_Q3SFH7 Type I restriction-modification system methyltransferase subunit n=5 Tax=Bacteria RepID=Q3SFH7_THIDA Length = 676 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 81/320 (25%), Positives = 130/320 (40%), Gaps = 55/320 (17%) Query: 126 DFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL---------KPQPREVVQDPAA 176 + G ++E L+++ + AG +FTPR +I+ ++ LL KP + DP Sbjct: 169 EMGLLFEDLIRRFNEQANETAGDHFTPREVIRLMVSLLFMHDDDLLSKPGTVRKMLDPTC 228 Query: 177 GTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFI-GLELVPGTRRLALMNCLLHDIE 235 GT G L E +Y++ + R F+ G + P + +A + LL Sbjct: 229 GTGGMLSETRKYLREHQSGA-------------RLFVYGQDFNPRSYAVAASDLLLRTNL 275 Query: 236 GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFG---SAAGTNITRTFVH--------- 283 + + I+ G+TL D + NPPFG ++ R Sbjct: 276 ADAE-TSTIKFGDTLIDDQFPGERFDYFLANPPFGVDWKRQQKDVVREHEKQGFAGRFGA 334 Query: 284 --PTSNK-QLCFMQHIIETLHP--------GGRAAVVVPDNVLFEGGKGT---DIRRDLM 329 P N L F+QH++ P G R A+V + LF GG G+ +IR+ ++ Sbjct: 335 GTPRVNDGALLFLQHMVSKFEPVDPANNLDGSRLAIVFNGSPLFTGGAGSGESEIRKWII 394 Query: 330 DKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTD--DVWVYDLRTNMPSF 387 + L I+ +P +FY G+ T V T A D D W LR ++ Sbjct: 395 ENDWLEAIVAMPEQMFYNTGIGTYVWVVTNRKEARRRGRIQLIDGRDRW-QSLRRSLGD- 452 Query: 388 GKRTPFTDEHLQPFERVYGE 407 KR F+D H+ R YG+ Sbjct: 453 -KRREFSDAHITDIVREYGD 471 >UniRef50_C8RRG5 Type I restriction-modification system, M subunit N-6 adenine-specific DNA methylase n=2 Tax=Corynebacterium RepID=C8RRG5_CORJE Length = 689 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 82/323 (25%), Positives = 138/323 (42%), Gaps = 57/323 (17%) Query: 123 SRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREV-----------V 171 S D G ++E L+++ + + AG++FTPR +I +++LL ++ + Sbjct: 159 SNDQMGYIFEELIRRFSELSNETAGEHFTPREVISLMVNLLFNPEEDINRLCADGAMASL 218 Query: 172 QDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLL 231 DP GT G L A ++V NDL+ ++ +++ G EL P T +A + + Sbjct: 219 YDPGVGTGGMLSTAAQHV----NDLN----ESARLEVY----GQELNPQTYAVAKSDIM- 265 Query: 232 HDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFG------------SAAGTNITR 279 I+G + I GN+L +D + + NPPFG A Sbjct: 266 --IKG--ERQERIYFGNSLTNDKTAGMRFDYMLCNPPFGVNWKKYADPILDEAEHKGYQG 321 Query: 280 TFVHPT---SNKQLCFMQHIIETLHP----------GGRAAVVVPDNVLFEGGKG---TD 323 F T S+ F+QH+I + P G R +V + LF GG G ++ Sbjct: 322 RFGAGTPRVSDGSFLFLQHMISKMKPYDPMDLVNAAGTRIGIVFNGSPLFTGGAGQGESE 381 Query: 324 IRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTN 383 IRR +++ L I+ LP +FY G+ T + + + ++K D Y R Sbjct: 382 IRRWILENDWLEAIIALPDQMFYNTGILTYIWVLSNKKERH-RKNKVQLIDATQYFQRMR 440 Query: 384 MPSFGKRTPFTDEHLQPFERVYG 406 P KR T+ ++ R+YG Sbjct: 441 KPLGEKRKELTETNIADITRIYG 463 >UniRef50_A1TSH9 N-6 DNA methylase n=4 Tax=cellular organisms RepID=A1TSH9_ACIAC Length = 709 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 80/296 (27%), Positives = 129/296 (43%), Gaps = 55/296 (18%) Query: 97 ITEPKQITALVSNMDSLDWYNGAHGKSRDDF--GDMYEGLLQKNANETKSGAGQYFTPRP 154 + E ++ +VS +D H K D+ G ++E L+++ AG +FTPR Sbjct: 134 LEESNRLYQVVSQFAEID----LHPKRVDNITMGLVFEDLIRRFNEAANETAGDHFTPRE 189 Query: 155 LIKTIIH-LLKPQPREVVQ--------DPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQD 205 +I+ +++ LL+P + Q DPA GT G L EA ++++ Sbjct: 190 VIQLMVNLLLEPDTSVLTQAGVIVTICDPACGTGGMLAEAQNWIRAHNE----------- 238 Query: 206 FQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVAT 265 Q G + P + +A + L I+G+ D G + LGNTL D + + Sbjct: 239 -QATVKVFGQDYNPRSYAVAASDLL---IKGHKD--GQVVLGNTLTDDPFPEQRFDYLLA 292 Query: 266 NPPFG---SAAGTNITR--TF------VHPTSNKQLCFMQHIIETLH---------PGGR 305 NPPFG A I R F + ++ L F+ +++ PG R Sbjct: 293 NPPFGVDWKAEKKVIDRWPNFRGYSGKLPRINDGALLFLLYMMSKFQEYKPGSRDKPGSR 352 Query: 306 AAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFT 358 AVV + LF GG G +DIRR ++++ L I+ LP +FY G+ T + T Sbjct: 353 TAVVFNGSPLFTGGAGSGESDIRRWIIERDQLEAIVALPEQMFYNTGIGTFIWVVT 408 >UniRef50_Q8DGT5 Type I site-specific deoxyribonuclease modification subunit n=6 Tax=Bacteria RepID=Q8DGT5_THEEB Length = 543 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 70/253 (27%), Positives = 110/253 (43%), Gaps = 22/253 (8%) Query: 122 KSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGF 181 + RD GD YE L+ + A + AG+++TP+P+ + ++ QDPA G Sbjct: 177 QERDLLGDAYEYLIGQFAAGSGKKAGEFYTPQPISSILSAIVSLD----AQDPANGKREK 232 Query: 182 LIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLH---DIEGNL 238 L + + + L ++ + + + + G E T LA MN LLH D E + Sbjct: 233 LGKVYDFACGSGSLLLNVGRRMGRYGVGKLY-GQEKNITTYNLARMNMLLHGLKDTEFEI 291 Query: 239 DHGGAIRLGNTLGSDGENLPKAHI----VATNPPFGS--AAGTNITRTF------VHPTS 286 HG ++ L L EN P I V NPPF G + F + P S Sbjct: 292 FHGDSL-LNEWLLLREEN-PAKKIEFDAVVANPPFSLRWEPGEELAEDFRFKDYGLAPKS 349 Query: 287 NKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFY 346 F+ H LH G A+++P VLF G IR+ L+ ++ T++ L +FY Sbjct: 350 AADFAFLLHGFHFLHKEGTMAIILPHGVLFRGNVEEKIRKKLLLDGNIDTVIGLAPNLFY 409 Query: 347 AQGVKTNVLFFTK 359 + G+ +L K Sbjct: 410 STGIPVCILVLKK 422 >UniRef50_A5IZ14 Modification (Methylase) protein of type Irestriction modification system HsdM n=2 Tax=Mycoplasma agalactiae PG2 RepID=A5IZ14_MYCAP Length = 892 Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 70/301 (23%), Positives = 119/301 (39%), Gaps = 44/301 (14%) Query: 125 DDFGDMYEGLLQKNANETKSGAGQYFTPRP----LIKTIIHLLKPQPREVVQDPAAGTAG 180 D G +YE L+ + A+ AG+++TP + K + H LK + V DP +G+ Sbjct: 189 DVLGYIYEYLIARFASSAGKKAGEFYTPHEVSELMSKIVAHHLKDRKVIKVYDPTSGSGS 248 Query: 181 FLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDH 240 L+ + K + G++ ++ EL L MN ++ +I H Sbjct: 249 LLLTIGQEFKKYNS------GNSP-----VSYYAQELKAEVFNLTRMNLIMKNISPTEIH 297 Query: 241 GGAIRLGNTLGSD------GENLPKAHI----VATNPPFG---SAAGTNITRTFVH---- 283 R G+TL D + H+ V +NPP+ +A + ++ Sbjct: 298 A---RNGDTLEQDWPMFENNDYSSYQHLSVDAVVSNPPYSQKWNAEKHTLDPRYIEYGIA 354 Query: 284 PTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTG 343 P + F+ H + + P G +V+P VLF G IR+ L+ K + TI+ LP Sbjct: 355 PKTKADYAFLLHDLYHVQPDGIITIVLPHGVLFRGNSEGQIRKTLIQKQQIDTIIGLPAN 414 Query: 344 IFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFER 403 +FY G+ T ++ K D+ D GK F+ H++ Sbjct: 415 MFYGTGIPTIIMILKKH---------RSEKDILFVDASKLYVKEGKNNKFSKSHIKKIAD 465 Query: 404 V 404 V Sbjct: 466 V 466 >UniRef50_A1BH53 N-6 DNA methylase n=4 Tax=Bacteria RepID=A1BH53_CHLPD Length = 662 Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 90/399 (22%), Positives = 151/399 (37%), Gaps = 67/399 (16%) Query: 6 LVAKLWKLCDNLR-DGGVSYQNYVNELASLLFLKMC--KETGQEAE-------------- 48 L +LW D LR + G+ Q Y + L+FL + + AE Sbjct: 16 LEKRLWDAADQLRANSGLKAQEYSAPVLGLIFLLFADVRFAARRAELESAKSSTRRGSRV 75 Query: 49 ------------YLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTT 96 YL R+ L +R E + + E + V Sbjct: 76 DDPAAYHAEGVLYLSPEARFVYLLNRPEAENIGVMVNEAMRAIEKHNPQLAGVLPKTYYL 135 Query: 97 ITEP--KQITALVSNM-DSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153 P KQ+ VS + S+D+ D FG +YE L + A G G+++TP Sbjct: 136 FDSPLLKQLLKKVSEIPSSMDY---------DAFGRIYEYFLGEFAMSEGQGGGEFYTPV 186 Query: 154 PLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFI 213 +++ + +++P ++ DPA G+ G + + R+V + + + IH Sbjct: 187 SIVRLLTEVIEPYHGRIL-DPACGSGGMFVSSARFVAQHKQN------PSAELSIH---- 235 Query: 214 GLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLP-KAHIVATNPPFGSA 272 G+E T RL +N +H +EG + HGG + N+ D + V NPPF Sbjct: 236 GIEKTDETGRLCRLNLAVHGLEGRIMHGGNV---NSYYDDPHDATGNFDFVLANPPFNVN 292 Query: 273 A----------GTNITRTFVHP-TSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKG 321 A G F P T N ++Q L+ GRA V+ ++ Sbjct: 293 AVDKERLKDSVGPGRRFPFGLPRTDNANYLWIQLFYSALNERGRAGFVMANSASDARSSE 352 Query: 322 TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 360 +IRR L++ + ++ + +FY + + FF K Sbjct: 353 QEIRRQLIESRTVDVMVAVGPNMFYTVTLPCTLWFFDKA 391 >UniRef50_C2E8R1 Site-specific DNA-methyltransferase n=15 Tax=Firmicutes RepID=C2E8R1_9LACO Length = 556 Score = 78.2 bits (191), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 68/287 (23%), Positives = 123/287 (42%), Gaps = 38/287 (13%) Query: 95 TTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRP 154 +T K + +V+ ++ +++ + A D GD+YE L+ + A G++FTP Sbjct: 153 STNVRAKTLLDIVNLVNEIEYKDEA---GHDILGDIYEYLIAEFAGNAGKKGGEFFTPHQ 209 Query: 155 ----LIKTIIHLLKPQPREV-VQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIH 209 L K I + P+ V D A G+ L+ + D+L + Sbjct: 210 VSLVLAKIIAANMDPEIEHPEVYDFACGSGSLLLTVE----------DELQIPGSQKRRR 259 Query: 210 RAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSD------GENLPKAHI- 262 + G EL +A MN ++H ++ + +R +TL +D +N+ H Sbjct: 260 VRYYGQELNTTNYNMARMNLMMHGVDYQM---MDLRNADTLENDWPDGVGNDNIDHPHFF 316 Query: 263 --VATNPPFGSAAGTNITRTF--------VHPTSNKQLCFMQHIIETLHPGGRAAVVVPD 312 V NPP+ S + + + P + F+ H + L+ G A+V+P Sbjct: 317 DAVVANPPYSSRWDNSANKIKDARFKDYGLAPKTKADYAFLLHGLYHLNSRGTMAIVLPH 376 Query: 313 NVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTK 359 VLF G IR+ L++K + I+ LP G+F++ G+ T ++ K Sbjct: 377 GVLFRGNAEGKIRKALLEKNQIDAIIGLPAGLFFSTGIPTIIMVLKK 423 >UniRef50_C7IHQ9 N-6 DNA methylase n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IHQ9_9CLOT Length = 737 Score = 78.2 bits (191), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 68/255 (26%), Positives = 109/255 (42%), Gaps = 45/255 (17%) Query: 147 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEA---DRYVKSQTNDLDDLDGDT 203 GQYFTPR ++K I+ L VV D + G+ GFL+ A R + Q + D+ Sbjct: 309 GQYFTPRNIVKFIVESLPITNESVVLDTSCGSGGFLLYALDKVRNIADQKAEEGYFSKDS 368 Query: 204 Q-------DFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLD------HGGAIRLGNTL 250 + DF R + G+E+ R A MN ++HD +G+ + G +L T Sbjct: 369 KEHWNFWHDFAEKRLY-GVEISESIARTAKMNMIIHD-DGHTNVVAFDGLEGIDKLSETT 426 Query: 251 GSDGENLPKAHIVATNPPFGS------------------------AAGTNITRTFVHPTS 286 + G + + TNPPFGS A N+ Sbjct: 427 KNPGFKKNRFDFIITNPPFGSTIKYSEHRYIEDFELGCKSIDWIEAKLKNVDLNSPRDNQ 486 Query: 287 NKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFY 346 + ++ F++ + LH GG A+V+PD +L +R + +K + ++ +P F Sbjct: 487 SSEILFIERCHQYLHDGGILAIVIPDGILTNSSMQY-VRDWIEEKYRIIAVVSMPQTAFT 545 Query: 347 AQ--GVKTNVLFFTK 359 A GVK++VLF K Sbjct: 546 ANGAGVKSSVLFLYK 560 >UniRef50_Q65QI8 HsdM protein n=8 Tax=Proteobacteria RepID=Q65QI8_MANSM Length = 732 Score = 78.2 bits (191), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 83/337 (24%), Positives = 138/337 (40%), Gaps = 61/337 (18%) Query: 127 FGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL---------KPQPREVVQDPAAG 177 G ++E L++K + AG +FTPR +I +++L+ +P + DP AG Sbjct: 176 MGYIFEELVRKFNEQANEEAGDHFTPREVINLMVNLIFEEDQQRLSQPHAIASIYDPTAG 235 Query: 178 TAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE-G 236 T G L E+++++KS + I G E + + + L+ D Sbjct: 236 TGGMLSESEKHLKSYNDS------------IKLQLFGQEYNAESYAICCADLLIKDEPIS 283 Query: 237 NLDHGGAIRLGNTLGS-------DGENLPKAHIVATNPPFG-----------SAAGTNIT 278 NL G + + N+ + DG K + +NPPFG A + Sbjct: 284 NLVFGDTLGVKNSKNTGTGFVPHDGHQTKKFDYMFSNPPFGVEWKNEQDFINDEAKSGFA 343 Query: 279 RTF---VHPTSNKQLCFMQHIIETLHP----GGRAAVVVPDNVLFEGGKG---TDIRRDL 328 F + ++ L F+QH+I + P G R AVV + LF G G ++IRR + Sbjct: 344 GRFGAGLPRINDGSLLFLQHMISKMKPVEEGGSRIAVVFNGSPLFTGDAGSGESNIRRWI 403 Query: 329 MDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYD----LRTNM 384 ++ L I+ LP +FY G+ T V V+N D+ V + D + Sbjct: 404 IENDWLEAIIALPDQLFYNTGIYTYVWI-----VSNKKSDRR-KGKVQLIDGTQHYQKMA 457 Query: 385 PSFG-KRTPFTDEHLQPFERVYGEDPHGLSPRTEGEW 420 S G KR + + R+Y + G S R ++ Sbjct: 458 KSLGDKRNELSPAQIADLTRLYADFKDGASGRISTKF 494 >UniRef50_C7N817 Type I restriction-modification system methyltransferase subunit n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N817_SLAHD Length = 654 Score = 78.2 bits (191), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 102/439 (23%), Positives = 178/439 (40%), Gaps = 81/439 (18%) Query: 10 LWKLCDN--LRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRW----DDLKSRI 63 +++ C N + G+ Q EL ++F K+ ++ LP + D+ SR Sbjct: 175 VFRTCHNHIYANDGLQKQQAFFELLKVIFCKI-----EDERNLPHPLEFYATSDERGSRD 229 Query: 64 GQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKS 123 GQ +Q K + + E KK +F + P+ + +VS + N + Sbjct: 230 GQLTVQ---KRVGAIFEKVKKRHGKIFDEDAVIELTPRSLAYIVSELQGYSLLN----TN 282 Query: 124 RDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLI 183 D G YE ++ N + GQ+FTPR ++K ++ +L P E V D + GT GF++ Sbjct: 283 IDIKGKAYEEIVGAN---LRGDRGQFFTPRNVMKMVVEMLDPTDEERVADTSCGTGGFIV 339 Query: 184 EADRYVKSQTN-DLDDLDGDTQDFQI--------------HRAFIGLELVPGTRRLALMN 228 A +V + +L D G +D+ + R F G ++ + MN Sbjct: 340 MAMTHVMQRIEAELVDEFGPREDWGVDETMAFQERVSDVASRNFFGFDIDRDLAKATKMN 399 Query: 229 CLL-HDIEGNLDHGGAI------------RLGNTLGSDG------ENLPKAHIVATNPPF 269 ++ +D GN+ ++ RL +G D ++L ++ TNPPF Sbjct: 400 MVMNNDGSGNIMQTNSLLPPHEWDMDFKSRLAKAIGRDPKSLVNWKSLAMFDVIVTNPPF 459 Query: 270 GSA---AGTNITRTF--------------------VHPTSNKQLCFMQHIIETLHPGGRA 306 G+ T+I F + + ++ F++ + L GGR Sbjct: 460 GTKIPIKDTSILGQFELAHIWECDKTTGKWTMTDRLQSSVPPEILFVERCTQFLVEGGRM 519 Query: 307 AVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQ-GVKTNVLFFTKGTVANP 365 +V+PD++L G G IR L+ + L + F GV+T+VL K + A Sbjct: 520 GIVLPDSILGSPGLGY-IREWLIANHRIVASLDMHQDTFQPHNGVQTSVLILQKKSQAEK 578 Query: 366 NQDKNCTDDVWVYDLRTNM 384 + + T V YD+ M Sbjct: 579 DAEAK-TRHVADYDIFMAM 596 >UniRef50_Q58617 Uncharacterized adenine-specific methylase MJ1220 n=7 Tax=Euryarchaeota RepID=Y1220_METJA Length = 578 Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 86/345 (24%), Positives = 130/345 (37%), Gaps = 57/345 (16%) Query: 123 SRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFL 182 S D GD YE L A TK+ G+ +TP + K I HL++P+ EV+ DPA G+ L Sbjct: 226 SYDILGDAYEWTLNYFA-PTKAKEGEVYTPIEVSKLIAHLVEPKDDEVILDPACGSGSML 284 Query: 183 IEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGG 242 IE R+ S N +G E T LA +N +LH I NL Sbjct: 285 IEQYRFAGSNPN---------------IVLVGQERNDVTAVLAKLNFILHGI--NLKDAK 327 Query: 243 AIRLGNTLGSDGENLP-------KAHIVATNPPFGS--------AAGTNITRTFVHPTSN 287 + L E+ KA V NPP+ +++ N Sbjct: 328 VFIGDSLLNPKFESFIXEVKGTGKADKVVANPPWNQDGYDENTLKVNEKYKDIYMYGFPN 387 Query: 288 KQ---LCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGI 344 K ++Q I + +A +V+ LF GGK IR+ +D + ++ LP + Sbjct: 388 KNSADWAWVQLI--NYYTEKKAGIVLDSGALFRGGKEKTIRKRFVDDDLIEAVVLLPEKL 445 Query: 345 FYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERV 404 FY +L K P + K + + P K +DE+++ + Sbjct: 446 FYNCPAPGIILILNKNK---PEERKGKILFINASNEYIKHPEVKKLNKLSDENIEKIAKA 502 Query: 405 YGE--DPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRW 447 Y E D G +V D EE + D +L S + Sbjct: 503 YKEFKDVDGF--------------CKVVDIEEIRKNDYNLNVSLY 533 >UniRef50_C1ZKX4 Type I restriction-modification system methyltransferase subunit n=2 Tax=Bacteria RepID=C1ZKX4_PLALI Length = 571 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 103/440 (23%), Positives = 167/440 (37%), Gaps = 59/440 (13%) Query: 9 KLWKLCDNLR-DGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLKSR--IGQ 65 +LW D LR + + Y + L+FL+ +AE SR IG+ Sbjct: 49 RLWASADELRANSKLKSSEYSVPVLGLIFLRYADHRFTQAERELNVLFAKKSGSRRAIGK 108 Query: 66 EQLQ------------FYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQI---------- 103 E Q F + + GED K + + E K I Sbjct: 109 EDFQAKGVMFLPPESRFSALLELPEGEDIGKAITTAMKAIEKENEELKGILPKTYSKIEN 168 Query: 104 TALVSNMDSLDWYN-GAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHL 162 T LVS + +L A G D FG +YE L A G++FTP L+K I+ + Sbjct: 169 TTLVSLLKNLSSIPVDAEG---DTFGKIYEYFLGNFARAEGQKGGEFFTPTSLVKLIVEI 225 Query: 163 LKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTR 222 ++P + DPA G+ G +++ ++K+ N+ + + G E V TR Sbjct: 226 IQPYHGRIY-DPACGSGGMFVQSADFIKAHHNNP----------AVEISIYGQERVDETR 274 Query: 223 RLALMNCLLHDIEGNLDHGGAIRLGNTLGSDG-ENLPKAHIVATNPPFG--SAAGTNITR 279 +L MN +H + G+ IR GNT D E++ K V NPPF + Sbjct: 275 QLCQMNLAVHGLSGD------IRQGNTYYEDPHESVGKFDFVMANPPFNVDKVDKEKLKE 328 Query: 280 TFVHP-----TSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHL 334 P N +++ +L+ GRA V+ ++ +IR+ L+ + Sbjct: 329 DPRFPLGMPRADNANYLWIELFYSSLNATGRAGFVMANSAADARQSEMEIRQKLLKAHVV 388 Query: 335 HTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNM----PSFGKR 390 ++ + FY + + F KG + + V D R + K Sbjct: 389 DVMIAIGPNFFYTVTLPCTLWFLDKGKSNLSGKGSQRKEQVLFIDARHIFRQVDRAHRKF 448 Query: 391 TPFTDEHLQPFERVY-GEDP 409 +P E++ R+Y GE P Sbjct: 449 SPKQLEYIANIVRLYRGEQP 468 >UniRef50_A0YWS1 Type I restriction-modification system methyltransferase subunit n=2 Tax=Bacteria RepID=A0YWS1_9CYAN Length = 694 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 68/256 (26%), Positives = 110/256 (42%), Gaps = 42/256 (16%) Query: 126 DFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQ------PREV--VQDPAAG 177 + G ++E L+ + + AG++FTPR +I+ ++ LL P+ P + + DPA G Sbjct: 159 EMGRIFEHLIYRFNQDNNETAGEHFTPREVIRLMVRLLFPEDDPTLHPDNILTIYDPACG 218 Query: 178 TAGFLIEADRYVKS-QTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEG 236 T G L EA Y+ QT + Q+H G E+ P +A + LL Sbjct: 219 TGGMLTEAKEYIHDIQTRKYQKIG------QVH--LFGQEINPTAFAVAKSDFLLKG--- 267 Query: 237 NLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFG---SAAGTNITRTF------------ 281 + I GN+ DG + + +NPPFG I R + Sbjct: 268 --EDPRRITFGNSFSEDGYPERRFRYMLSNPPFGVDWKKVQYIIKREYETQGFDGRFGAG 325 Query: 282 VHPTSNKQLCFMQHII--ETLHPGGRAAVVVPDNVLFEGGKGT---DIRRDLMDKCHLHT 336 + ++ L F+QHI+ R +V + LF G G+ +IRR +++ L Sbjct: 326 LPRINDGSLLFLQHILSKRAKEEPSRTVIVFNGSPLFTGDAGSGESNIRRWIIENDWLEG 385 Query: 337 ILRLPTGIFYAQGVKT 352 I+ LP +FY G+ T Sbjct: 386 IVALPDQLFYNTGIST 401 >UniRef50_C9L2F5 Type I restriction-modification system, M subunit n=1 Tax=Bacteroides finegoldii DSM 17565 RepID=C9L2F5_9BACE Length = 494 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 75/331 (22%), Positives = 129/331 (38%), Gaps = 41/331 (12%) Query: 126 DFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL-KPQPREVVQDPAAGTAGFLIE 184 D G +Y LL A E TP+ +I + L+ + + DP +G+ L+E Sbjct: 149 DIGALYNLLLYIFAEEAGKKINNVLTPKEVIGLVAELIGDNKDNNSLCDPVSGSGTLLVE 208 Query: 185 ADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAI 244 + V + ++ + + + + + MN +L+ + + G Sbjct: 209 VGKRVGIRGANIFGQEANWNQYALTK----------------MNLMLNGFKDSTFFWGD- 251 Query: 245 RLGNTLGSDGENLPKAHIVATNPPFGSAAGTNIT--------RTFVHPTSNKQLCFMQHI 296 L N +D L + IVA+ PPF T + + P S ++ HI Sbjct: 252 SLSNPKLTDDGGLKRFDIVASIPPFADKWATEEAEFDRYGRFQYGIPPRSQATWAYISHI 311 Query: 297 IETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLF 356 + +L P GRA VVVP VLF + + IR +++ L ++ LP +FY + T +L Sbjct: 312 LASLKPNGRAVVVVPAGVLFRTSE-SKIRHQIIEHNLLEAVIELPQNLFYGAAISTAILV 370 Query: 357 FTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRT 416 F K D+ T +++ D R S +D ++ Y G Sbjct: 371 FRK--------DRKTTQTLFM-DARKGYISNKGIYKLSDTMVEQLLNTYKGFLSG----- 416 Query: 417 EGEWSFNAEETEVADSEENKNTDQHLATSRW 447 E W N+ +A EE +N T ++ Sbjct: 417 EQVWQENSCPAYIATQEEVRNNKYDWQTVKY 447 >UniRef50_Q60297 Putative type I restriction enzyme MjaXP M protein n=4 Tax=Euryarchaeota RepID=T1MH_METJA Length = 558 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 71/326 (21%), Positives = 130/326 (39%), Gaps = 35/326 (10%) Query: 49 YLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDD--KKLVQAVFHNVSTTITEPKQITAL 106 YLP+ RWD + + + + E+ +L + + + + + L Sbjct: 128 YLPKETRWDYFVENVMSPNIGEIIDTAIEILEEKYPDRLKDVIPKIYAQSPLDNHDYSYL 187 Query: 107 VSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQ 166 ++ + + G + +D FG +YE L K G+++TPR L K I+ +L + Sbjct: 188 INKFSEISF--GKEHRVKDVFGRIYEYFLGKFTEVEGKLGGKFYTPRSLTKLIVDVLDVK 245 Query: 167 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLAL 226 + DPA G+ GF + A ++ + D+++L QD P RL Sbjct: 246 GGSIF-DPACGSGGFFVSALEKLEREGIDINELSIYGQDSD-----------PMAYRLTK 293 Query: 227 MNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAA--GTNIT------ 278 MN ++ EG+ IR+ ++ D V NPPF + I Sbjct: 294 MNLIIRGAEGD------IRIDDSYHDDKFMDMTFDYVVANPPFNDSEWDANRIKPDDPRL 347 Query: 279 -----RTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCH 333 + V P N ++ H I P G+A V+ + L G +IR+ +++ Sbjct: 348 RIGNKKVPVPPNGNANYMWILHFIYHTAPNGKAGFVMANGALSAGNVEGEIRKAIIENDL 407 Query: 334 LHTILRLPTGIFYAQGVKTNVLFFTK 359 ++ I+ P +FY + ++ F K Sbjct: 408 VYGIVACPPKLFYNVSLPVSLWFIRK 433 >UniRef50_A3DAQ0 N-6 DNA methylase n=1 Tax=Shewanella baltica OS155 RepID=A3DAQ0_SHEB5 Length = 565 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 71/295 (24%), Positives = 115/295 (38%), Gaps = 56/295 (18%) Query: 125 DDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIE 184 D FG +YE L + A++ G++FTP L++ ++++++P ++ DPA G+ G ++ Sbjct: 154 DIFGRIYEYFLTQFADQGAHDGGEFFTPVSLVQLLVNVIEPDHGKIF-DPACGSGGMFVQ 212 Query: 185 ADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHG-GA 243 + ++ D +L F G E T RLA MN +H +EGN++ G A Sbjct: 213 SAHFMARHAQDPHEL-----------TFYGHEKNRVTTRLAKMNLAVHGLEGNVEGGESA 261 Query: 244 IRLGNTLGSDGENL-PKAHIVATNPPFG-------SAAGTNITRTFVHP-------TSNK 288 I N E L V NPPF G F P SN Sbjct: 262 ITYYN---DPHEGLFGTVDYVMANPPFNVDEVDADKIKGDKHRLPFGLPGVNKNKKVSNG 318 Query: 289 QLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQ 348 ++Q+ L+ GRA V+ G +R L+ + ++ + + FY + Sbjct: 319 NYLWIQYFYSYLNDTGRAGFVMSSQASSAGRDEAKVREQLVKTGDVDIMIDIRSNFFYTR 378 Query: 349 GVKTNVLFFTKGTVA-------------------------NPNQDKNCTDDVWVY 378 V + F K A +P Q +N T VW+Y Sbjct: 379 TVPCQLWFLNKNKPAHLKDKVLMLDARNVYRKVTRKIYDFSPEQQQNLTAVVWLY 433 >UniRef50_B2UNL2 Type I restriction-modification system, M subunit n=8 Tax=Bacteria RepID=B2UNL2_AKKM8 Length = 853 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 72/286 (25%), Positives = 112/286 (39%), Gaps = 44/286 (15%) Query: 125 DDFGDMYEGLLQKNANETKSGAGQYFTPRP---LIKTIIHL-LKPQPREVVQDPAAGTAG 180 D G +YE L+ A AG+++TP L+ I+ LK + + + DP +G+ Sbjct: 163 DVLGFIYEYLISNFAANAGKKAGEFYTPHEVSLLMSEIVAAHLKDRQQIKIYDPTSGSGS 222 Query: 181 FLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDH 240 LI + V D++ + EL T L MN ++ G L + Sbjct: 223 LLINIGKCVARYMGGGDNI-----------KYYAQELKENTYNLTRMNLVMR---GILPN 268 Query: 241 GGAIRLGNTLGSD----GENLP-------KAHIVATNPPFGSA------AGTNITRTFVH 283 R G+TL D +N P V +NPP+ + R + Sbjct: 269 NIVTRNGDTLEEDWPYFDDNDPVNTYDPLYVDAVVSNPPYSQSWNPADKESDPRYRFGLA 328 Query: 284 PTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTG 343 P F+ H + L P G +V+P VLF GG IRR+L++ H+ I+ LP Sbjct: 329 PKGKADYAFLLHDLYHLKPDGIMTIVLPHGVLFRGGTEGAIRRNLVEYNHIDAIIGLPAN 388 Query: 344 IFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGK 389 IF+ G+ T ++ + K DV + D GK Sbjct: 389 IFFGTGIPTIIMVL---------KQKRENTDVLIVDASKGFAKVGK 425 >UniRef50_B4VJK3 N-6 DNA Methylase family n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VJK3_9CYAN Length = 679 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 72/261 (27%), Positives = 111/261 (42%), Gaps = 43/261 (16%) Query: 128 GDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADR 187 G+ ++ L+ + + GQ+FTPR L+KT++ + P+P V DPA GT FL E+ Sbjct: 149 GEAFQALI---GPKLRGDKGQFFTPRSLVKTMVSIADPKPYSKVVDPACGTGSFLSESYN 205 Query: 188 YVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN---LDHGGAI 244 Y T G+T H + +GL+ RLA L I N + ++ Sbjct: 206 YWIETT-------GETLLPDNHYSLVGLDKDKDISRLA--TATLEIIAPNNYSVFTTDSL 256 Query: 245 RLGNTLGSD-GENLPKAHIVATNPPFGSAAGTN-----------------------ITRT 280 + + + S + A +V TNPPFG+ G I Sbjct: 257 DINHLIASGFSSKIFDADVVLTNPPFGAKIGVTRESILEQYDLGHHWYFSSTENSWIKSD 316 Query: 281 FVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHT-ILR 339 V + Q+ F++ ++ L PGG +V+P+ V G K T D + + + T +L Sbjct: 317 KVRKNQDPQILFIELCVKILKPGGVLGIVLPEGVF--GNKQTGYIWDYLHQEGIITALLD 374 Query: 340 LPTGIFY-AQGVKTNVLFFTK 359 P F KTNVLFF K Sbjct: 375 CPRTTFQPGTDTKTNVLFFQK 395 >UniRef50_Q0BM27 Type I site-specific deoxyribonuclease n=8 Tax=Francisella tularensis RepID=Q0BM27_FRATO Length = 775 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 97/458 (21%), Positives = 180/458 (39%), Gaps = 110/458 (24%) Query: 5 DLVAKLWKLCDNL--RDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLKSR 62 D AK+ C N+ + +S + +E++ +LF+K+ E + + D+ K R Sbjct: 122 DEFAKVLNKCHNIIRNNDKLSPEAAFDEISKVLFIKIMYERNINQNQM---FSLDEFK-R 177 Query: 63 IGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTT-----ITEPKQITALVSN-----MDS 112 + + +R++ +++ +Q F V I EP + + + + Sbjct: 178 LREN----FREIHKGTSQENDSFIQYRFEQVKREFEKDHIFEPNETIRIRESSFEDIVKE 233 Query: 113 LDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQ 172 L+ YN + D G +E L + + GQ+FTPR +++ ++ +L + E++ Sbjct: 234 LEKYNLTKTGA-DVKGIAFETFLGRTF---RGELGQFFTPRKVVEFMVDVLDIKQNELIC 289 Query: 173 DPAAGTAGFLIEADRYVKSQTND-----------------LDDLD--------------- 200 DP AG+ GFLI A VK + ++ L+++D Sbjct: 290 DPCAGSGGFLIRAFEIVKDKIDEKYIRLKKLKQREVFGENLENIDDEKLKAKYEQVINEL 349 Query: 201 GDTQDFQIH----RAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGEN 256 + Q +I + G + P R++ MN ++H +G H G L +G Sbjct: 350 NEKQKLEIQYLSKSSIFGTDANPRMARVSKMNMIMHG-DG---HNGIHHNDGLLNVNGIF 405 Query: 257 LPKAHIVATNPPFGSAAGTN---------------------------------ITRTFVH 283 + ++ TNPPFG+ G + +T F Sbjct: 406 RNRFDVILTNPPFGTNLGKDNSKVSEEDKYTDEKMITHYKKIYGDVYEEELKQVTDNFGK 465 Query: 284 PTSN----------KQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCH 333 P + ++ F++ ++ L GGR +V+P+ VL R + Sbjct: 466 PIRSLYKTGEISGATEVLFVERCLDLLKAGGRMGIVLPEGVL-NSSNLQKAREYFESRAK 524 Query: 334 LHTILRLPTGIFYAQG--VKTNVLFFTKGTVANPNQDK 369 + I+ LP +F + G VKT+++F K TV QDK Sbjct: 525 ILLIVSLPQDLFVSSGATVKTSLVFLKKFTVEEQKQDK 562 >UniRef50_Q160U6 Type I restriction-modification system DNA methylase, putative n=12 Tax=Proteobacteria RepID=Q160U6_ROSDO Length = 677 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 74/269 (27%), Positives = 115/269 (42%), Gaps = 48/269 (17%) Query: 127 FGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL----------KPQPREVVQDPAA 176 ++YE L+++ E A + TPR ++ I LL P + DP Sbjct: 156 MSNVYEHLIRRFGAEVNEAAEDFMTPRDVVHLAIELLLDPDDQLFIENPGLIRTLYDPTC 215 Query: 177 GTAGFLIEADRYVKSQTNDLDDLDGDTQD-FQIHRAFI--GLELVPGTRRLALMNCLLHD 233 GT GFL + +V+ + QD + I I G EL P T + L LL Sbjct: 216 GTGGFLSDGMEHVR-----------NLQDRYSIAPVIIPYGQELEPETHAVCLAGMLLKT 264 Query: 234 IEGN--LDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGS---AAGTNITRTF------- 281 +E + D I LG+TL +D K H +NPPFG ++TR Sbjct: 265 LETDPGRDLSKNIALGSTLSADKHRPEKFHYCVSNPPFGKKWEKDQADVTREHKEQGFEG 324 Query: 282 --------VHPTSNKQLCFMQHIIETL-HPGGRAAVVVPDNVLFEGGKG---TDIRRDLM 329 V S L + +E+ + GGRAA+++ + LF G G ++IRR L+ Sbjct: 325 RFGPKLPRVSDGSMLFLLHLLSKLESPENGGGRAAIILSGSPLFNGNAGQGESEIRRHLL 384 Query: 330 DKCHLHTILRLPTGIFYAQGVKTNVLFFT 358 ++ + I+ LPT IF+ G+ T + + Sbjct: 385 EQDVVEAIIALPTEIFFRTGIGTYIWILS 413 >UniRef50_A9DR80 Restriction/modification methyltransferase n=2 Tax=Bacteria RepID=A9DR80_9FLAO Length = 737 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 69/259 (26%), Positives = 116/259 (44%), Gaps = 48/259 (18%) Query: 128 GDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPRE-------VVQDPAAGTAG 180 G ++E L++K E AG++FTPR +I+ + HL+ ++ + D A G+ G Sbjct: 183 GYVFEELIRKFNEENNEEAGEHFTPREIIQLMTHLIFLPIKDKLKVAQYSIYDSACGSGG 242 Query: 181 FLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDH 240 L EA++Y K T + + + G E+ P T + + L I+G D+ Sbjct: 243 MLTEAEKYAKRITKN-----------KTSFSLYGQEVNPETWAVCNSDML---IKGEKDY 288 Query: 241 GGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTN-----ITR-------------TFV 282 I G+TL +D + + +NPP+G A + I R T + Sbjct: 289 --HIAYGSTLSNDSFQFKEFDFMLSNPPYGKAWKKDEDSIVIERGKTNELIKDPRFQTGL 346 Query: 283 HPTSNKQLCFMQHIIETLHP----GGRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLH 335 S+ QL F+ +++ + G R A V + LF G G ++IRR L++ + Sbjct: 347 PKISDGQLLFLSNMVHKMKKGTELGSRIASVHNGSSLFTGNAGQGESEIRRYLIESDLVE 406 Query: 336 TILRLPTGIFYAQGVKTNV 354 I+ LP IFY G+ T + Sbjct: 407 CIVALPEKIFYNTGIPTYI 425 >UniRef50_UPI00017F5863 N-6 DNA methylase n=1 Tax=Clostridium difficile ATCC 43255 RepID=UPI00017F5863 Length = 675 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 104/435 (23%), Positives = 181/435 (41%), Gaps = 95/435 (21%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLK------------MCKETGQEAEY 49 NN + +A LW + ++LR G ++Y + L+ ++ + K +E ++ Sbjct: 5 NNFNHIAFLWNIAESLR-GTYKEEDYRKVMLPLIVIRRFDCLLDDYDREIVKSVYKEYDF 63 Query: 50 LPEGYRWD----DLKSRIGQEQLQFYR------KMLVHLGEDDKKLVQAVFHNVSTTITE 99 LPE + + DLK + LQFY K L+ E+ K + + S ++ E Sbjct: 64 LPEEEKDELVIVDLKENHNID-LQFYNVSDFTWKKLLDDSENIKSNFEEYLNGFSNSVKE 122 Query: 100 ----------------PKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETK 143 ++ A++S M +D + + S ++ G +YE +L++ Sbjct: 123 IIGKFKFKDEIAQLDKKDKLYAVLSKMYEVDLH--INSVSNNEMGYIYEEMLRRFTE--N 178 Query: 144 SGAGQYFTPRPLIKTIIHLLKPQPREV---------VQDPAAGTAGFLIEADRYVKSQTN 194 S AG+ +TPR +I+ + +L + D GT G L A+ YV+ Sbjct: 179 SAAGEQYTPREVIRLCMEMLFMGKENFLTEEGKVISIADFCCGTGGMLSIAEDYVEK--- 235 Query: 195 DLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDG 254 I + G EL+ + + + ++ N D+ IRLGNTL D Sbjct: 236 --------VNPSAIVNVY-GQELLDESFAICQADMIMKG--QNPDN---IRLGNTLTQDR 281 Query: 255 ENLPKAHIVATNPPFG-----------SAAGTNITRTFVHPT---SNKQLCFMQHIIETL 300 + K + +NPPFG A F T S+ L F+Q++I + Sbjct: 282 FSGEKIRFLISNPPFGVTWKDEEKKVKEEADLGFDGRFGAGTPRVSDGSLLFLQNMISKM 341 Query: 301 H---PGGRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNV 354 + G R A++ + LF G G ++IR+ +++K L I+ LPT +FY G+ T + Sbjct: 342 YDDEEGSRIAIIFNGSPLFTGDAGSGESNIRKWIIEKDLLEGIIALPTDMFYNTGIATYI 401 Query: 355 LFFTKGTVANPNQDK 369 T N +DK Sbjct: 402 WVLT-----NKKEDK 411 >UniRef50_C7P732 N-6 DNA methylase n=1 Tax=Methanocaldococcus fervens AG86 RepID=C7P732_METFA Length = 1068 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 93/394 (23%), Positives = 171/394 (43%), Gaps = 66/394 (16%) Query: 1 MNNNDLVAKLWKLCDNLRDGG-VSYQNYVNELASLLFLKMCKE-TGQEAEYLPEGYRWDD 58 ++ ++L+ L K+ D + GG ++ +E++ L+F K+ E T ++ EY YR+ Sbjct: 185 VSRDELIRVLEKVHDTVWQGGKLAPTTAFDEVSKLIFCKIWDEKTTRKGEY----YRFQI 240 Query: 59 LKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNG 118 + ++ +K+ ED KK VF EP+ + ++V + ++ + Sbjct: 241 GSNESAKDVFDRIKKIY----EDAKKKDPYVF--AEDIKLEPEIVYSVVEQLQEINLKDT 294 Query: 119 AHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPRE------VVQ 172 D G +E ++ + K GQYFTPR +I ++ E V Sbjct: 295 ----DLDTKGVAFERFME---DFFKGKMGQYFTPREIINFMVEFAMLHFDEDEYLNLKVL 347 Query: 173 DPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHR--------AFIGLELVPGTRRL 224 DPA G+ GFL+ +++ +G+ F+ ++ G+E+ R+ Sbjct: 348 DPACGSGGFLLHVLDFIRRWA------EGNYDKFEAYQHWHEFAKNNIYGIEINEQISRV 401 Query: 225 ALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAH---------IVATNPPFGSAAGT 275 MN +LHD +G H I D E + K H ++ TNPPFG+ Sbjct: 402 CKMNMILHD-DG---HTNIISFDAL--EDFEKIEKIHKDFKKGSFDLILTNPPFGAKIKK 455 Query: 276 NITRTFVH-------PTSNK-QLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRD 327 + R ++ TS K ++ F++ E L GG +V+PD +L +R Sbjct: 456 S-ERKYIENYELGKGRTSQKTEILFIERCWEFLKEGGILGIVLPDGIL-TNSTLQYVRDF 513 Query: 328 LMDKCHLHTILRLPTGIF--YAQGVKTNVLFFTK 359 ++++ + ++ LP F Y GVK++++F K Sbjct: 514 ILNRFRVLAVISLPNFAFTHYGAGVKSSLVFLQK 547 >UniRef50_C3RBV5 N-6 DNA methylase n=5 Tax=Bacteroidales RepID=C3RBV5_9BACE Length = 658 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 72/290 (24%), Positives = 119/290 (41%), Gaps = 48/290 (16%) Query: 127 FGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHL-LKPQPREVVQD--------PAAG 177 G ++E +++ GAGQ++TPR +++ + + L Q ++ QD P G Sbjct: 168 MGTVFEIVIRYAKESVGIGAGQFYTPRDIVRLMTEITLLGQEDKIYQDGKIISVYDPCCG 227 Query: 178 TAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN 237 T G L + T D + + + G EL T L + ++ Sbjct: 228 TGGIL--------TLTKDTIEETAKERRVDVTVNLFGQELNDKTYALCKSDIIMKG---- 275 Query: 238 LDHGGAIRLGNTLGSDGENLPKAHIVATNPPFG----------SAAGTNITRTF---VHP 284 D I +G+TL D K + + NPP+G SA + F + Sbjct: 276 -DEAKGIAVGDTLLVDEFRDQKFNFMLANPPYGVDWKREYDSVSAEAEDKNSRFAPGLPD 334 Query: 285 TSNKQLCFMQHIIETLHP-GGRAAVVVPDNVLFEGGKGT---DIRRDLMDKCHLHTILRL 340 S+ QL F H++ + P G R ++ + LF GG G+ +IR+ ++D L I+ L Sbjct: 335 KSDGQLLFTLHMLHKMDPKGSRVGILSNGSPLFNGGAGSGWSNIRKHMLDNDLLDAIIAL 394 Query: 341 PTGIFYAQGVKTNVLFFTKGTVANPNQDK------NCTDDVWVYDLRTNM 384 P G+FY G+ T + F P K N D +V +R N+ Sbjct: 395 PGGLFYGTGIATYLWIFDN---KKPESHKNKVLLINAAKDEYVQPMRKNL 441 >UniRef50_C8W115 Type I restriction-modification system, M subunit n=14 Tax=Bacteria RepID=C8W115_DESAS Length = 584 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 70/260 (26%), Positives = 112/260 (43%), Gaps = 42/260 (16%) Query: 125 DDFGDMYEGLLQKNANETKSGAGQYFTPRPL--IKTIIHLLKPQPREVVQDP-------- 174 D G+ YE L+ + A+ + AG+++TP+ + I + I +L Q + P Sbjct: 228 DLLGNAYEYLIGQFASGSGKKAGEFYTPQQISNILSRIVILDSQDPSTGKKPYINNLLDF 287 Query: 175 AAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLH-- 232 A G+A LI +++ + N + + G ++ T LA MN LLH Sbjct: 288 ACGSASLLINVKKHL--EPNSISQIYGQEKNIT-------------TYNLARMNMLLHRF 332 Query: 233 -DIEGNLDHGGAIRLGNTLGSDGENLP----KAHIVATNPPFGSAAGTNIT-------RT 280 D E + HG + L N E P K V NPPF N T ++ Sbjct: 333 KDSEFQIFHGDS--LLNDWDILNEMNPAKKLKCDAVVANPPFSYRWEPNDTLAEDFRFKS 390 Query: 281 F-VHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILR 339 + + P S F+ H L G A+++P VLF GG IR L++ ++ TI+ Sbjct: 391 YGLAPKSAADFAFLLHGFHFLSDEGTMAIILPHGVLFRGGAEEKIRTKLLEDGNIDTIIG 450 Query: 340 LPTGIFYAQGVKTNVLFFTK 359 LP +F++ G+ +L K Sbjct: 451 LPANLFFSTGIPVCILVLKK 470 >UniRef50_Q39L72 N-6 DNA methylase n=1 Tax=Burkholderia sp. 383 RepID=Q39L72_BURS3 Length = 605 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 68/269 (25%), Positives = 113/269 (42%), Gaps = 60/269 (22%) Query: 147 GQYFTPRPLIKTIIHLLKPQPR---------EVVQDPAAGTAGFLIEA--DRYVKSQTND 195 GQ+FTPR ++ ++ L + P E D AG+ GFLI A D Y + ++ Sbjct: 286 GQFFTPREIVAFMLDLARENPEGPALDISKGERFLDGCAGSGGFLIAAYEDVYKHALSST 345 Query: 196 LDDLDGDTQDFQIHR----AFIGLELVPGTRRLALMNCLLHDIEG------------NLD 239 + GD ++ + R F E+ RL +N ++H + N + Sbjct: 346 IR---GDERENLLRRLGQETFFACEIEEKAARLGKLNMIVHAVNAQNAQWLHQNYLYNEE 402 Query: 240 HGGAIRLGNTLGSDGENLPKAHI-------VATNPPFGSAAGT-NI---------TRTF- 281 GG L GE K I + TNPPFG + T N+ +TF Sbjct: 403 RGGLKPLIEYEVDFGEGKKKRQIGSSSIDLILTNPPFGKSVKTENVLLDYQFGHEVKTFK 462 Query: 282 ---------VHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKC 332 + + ++ F++H + TL PGG+ +V+PD VL +R + + Sbjct: 463 SAGRPPEKRAKNSQDSEVLFIEHYLRTLKPGGKLLIVLPDGVL-SNATAKPVRDYIREHA 521 Query: 333 HLHTILRLPTGIFYAQG--VKTNVLFFTK 359 + +++ LP+ F + G + TNV+F K Sbjct: 522 IIKSVISLPSETFASTGTSIPTNVVFLQK 550 >UniRef50_C8P6G6 Type I restriction-modification n=2 Tax=Bacteria RepID=C8P6G6_9LACO Length = 699 Score = 75.1 bits (183), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 83/344 (24%), Positives = 138/344 (40%), Gaps = 66/344 (19%) Query: 108 SNMDSLD----WYNGAHGKSRDDF----------GDMYEGLLQKNANETKSGAGQYFTPR 153 SN+D +D YN S D G ++E L+ + AGQ++T R Sbjct: 129 SNIDKMDKGGCLYNVVKAFSELDLSVAKFDSIKMGYIFENLIARFYQNV--DAGQFYTGR 186 Query: 154 PLIKTIIHLLKPQPRE---------VVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQ 204 +I+ + LL + E V D A GT G L A Y+K +D Sbjct: 187 DIIRLCVSLLLAEGSEDILEDNKVVTVLDQACGTGGMLSTAYTYLKHLNPTVD------- 239 Query: 205 DFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVA 264 +H G EL+ + + L L+ D N+D+ + +TL D K V Sbjct: 240 ---VH--LFGQELMGQSYAVGLAEMLIKD--QNIDN---FKHADTLKEDCFPDQKMRFVL 289 Query: 265 TNPPFGSAAG---------TNITRTFVH-----------PTSNKQLCFMQHIIETLHPGG 304 NPPFG+ G ++ ++ T++ QL F+Q + L G Sbjct: 290 ENPPFGTPWGGKDAKQGQEESVKEEYLKGESSRWPAGLPKTNDAQLLFIQSALSKLDDNG 349 Query: 305 RAAVVVPDNVLFEGGKGT---DIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGT 361 RAA++ + LF G + +RR L++ +L TI+ +PT +FY + T + +K Sbjct: 350 RAAIIENGSSLFTGNTASGESQVRRWLLENDYLDTIVAMPTDLFYNTELATYIWILSKNK 409 Query: 362 VANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVY 405 D +Y+ + P K+ F+ E+ + ++Y Sbjct: 410 SQKRKGKVQFIDATNIYE-KLRKPLGKKKNEFSKENREQITKLY 452 >UniRef50_B7K553 N-6 DNA methylase n=13 Tax=cellular organisms RepID=B7K553_CYAP8 Length = 676 Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 72/311 (23%), Positives = 132/311 (42%), Gaps = 48/311 (15%) Query: 126 DFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPRE---------VVQDPAA 176 + G ++E L++K G++FTPR +I+ ++ LL Q ++ + DP Sbjct: 153 EMGYIFEELIRKFNEALDENPGEHFTPREVIRLMVSLLLSQDKDSLKQAHITRTIYDPCC 212 Query: 177 GTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEG 236 G+ G L A + +L+ + F G E+ P T + + + +G Sbjct: 213 GSGGMLTIAKERIL-------ELNPNATVF-----LFGQEVNPETFAICKSDLYMKSEDG 260 Query: 237 NLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGS-------AAGTNITRT---FVHPT- 285 I+ G+TL +D + + NPP+G A T +T F T Sbjct: 261 K--DADNIKFGSTLSNDQHSDKSFDYLLANPPYGKDWKRDKDAVETEAQKTGSRFSAGTP 318 Query: 286 --SNKQLCFMQHIIETLHP----GGRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHT 336 S+ QL F+Q ++ + G R A+V+ + LF G G ++IRR +++ L Sbjct: 319 RISDGQLLFLQQMLARMKSPENGGSRVAIVMNGSPLFTGDAGSGESEIRRWILENDWLEA 378 Query: 337 ILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTD--DVWVYDLRTNMPSFGKRTPFT 394 I+ LP +FY G+ T + + + + + D WV +R ++ KR + Sbjct: 379 IIALPEQLFYNTGISTYIWILSNKKLLQKKEKVQLINGSDFWVA-MRKSLGD--KRREIS 435 Query: 395 DEHLQPFERVY 405 EH++ ++ Sbjct: 436 TEHIEKITAIF 446 >UniRef50_C0W5F1 Type I restriction-modification system methyltransferase subunit n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W5F1_9ACTO Length = 687 Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 79/333 (23%), Positives = 134/333 (40%), Gaps = 68/333 (20%) Query: 123 SRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL---------KPQPREVVQD 173 S +D G ++E L+++ + AG++FTPR +I+ ++ +L +P + D Sbjct: 159 SNEDMGSIFEELIRRFNELSNETAGEHFTPREVIQLMVEVLFGPDMNAICEPGFMASLYD 218 Query: 174 PAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD 233 P GT G L A + ++L++ +++ G EL P T +A + L+ Sbjct: 219 PGVGTGGMLSAA----IERAHELNE----GARIEVY----GQELNPQTYAVAKSDILIKG 266 Query: 234 IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFG--------------------SAA 273 D I GN+L +D + + NPPFG Sbjct: 267 -----DDAERIYFGNSLTADRTAGRTFNYMLCNPPFGVEWKKYADPIKDEAEKRGWKGRF 321 Query: 274 GTNITRTFVHPTSNKQLCFMQHIIETLHP----------GGRAAVVVPDNVLFEGGKG-- 321 G + R S+ F+QH+I + P G R +V + LF G G Sbjct: 322 GAGLPRI-----SDGSFLFLQHMISKMKPYDPADIQNAPGTRIGIVFNGSPLFTGSAGQG 376 Query: 322 -TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDL 380 ++IRR +++ L I+ LP +FY G+ T V + + D ++ Sbjct: 377 ESNIRRWILENDWLEAIIALPDQMFYNTGILTYVWVLSNRKASIRKNKVQLIDATGLF-A 435 Query: 381 RTNMPSFGKRTPFTDEHLQPFERVYG---EDPH 410 R P KR T++++ R+YG ED H Sbjct: 436 RMRKPLGEKRKYLTEDNIAQIARIYGDFTEDEH 468 >UniRef50_B2IZZ1 N-6 DNA methylase n=1 Tax=Nostoc punctiforme PCC 73102 RepID=B2IZZ1_NOSP7 Length = 614 Score = 74.7 bits (182), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 73/279 (26%), Positives = 125/279 (44%), Gaps = 36/279 (12%) Query: 104 TALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL 163 AL ++ L ++ K+ D G ++ +L + ++G GQYFTP P++ + ++ Sbjct: 301 VALFKIVEKLQEFSFIDSKA-DIKGSAFQSVL---GSAIRAGMGQYFTPPPIVDLAVGIM 356 Query: 164 KPQPREVVQDPAAGTAGFLIEA-DRYVKSQTNDLDDLD-GDTQDFQIHRAFIGLELVPGT 221 KP +++ DP G+ FL D V+ Q LD + F +H G+E Sbjct: 357 KPTASDMILDPFCGSGHFLSRCLDYVVQHQGATLDSYTLHQFKFFHLH----GIEKSERM 412 Query: 222 RRLALMNCLLHDIEG-----NLDHGGAIRLGN-----TLGSDGENLPKAH-IVATNPPFG 270 R+A+ + +LHD +G NLD + N L ++ P+ ++ TNPPFG Sbjct: 413 VRIAMTDMMLHD-DGHTNIRNLD--ALLSFENYPDIVALNDSEDDTPEVFSMILTNPPFG 469 Query: 271 SAAGTNITRT---FVHPTSNKQLCF----MQHIIETLHPGGRAAVVVPDNVLFEGGKGTD 323 S + F K L ++ + L PGG+ ++V+PD +L K + Sbjct: 470 SIMRQEVMEMVGRFQLGHKKKSLPLEILGLERCFQFLKPGGKLSIVLPDGLL--KNKSSI 527 Query: 324 IRRDLMDK-CHLHTILRLPTGIF--YAQGVKTNVLFFTK 359 RD ++ + ++ LP F Y VKT++ F K Sbjct: 528 FVRDWVENVAKIKAVISLPEEAFNPYGAMVKTSLCVFQK 566 >UniRef50_B7KIM1 N-6 DNA methylase n=3 Tax=Bacteria RepID=B7KIM1_CYAP7 Length = 911 Score = 74.7 bits (182), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 101/408 (24%), Positives = 167/408 (40%), Gaps = 78/408 (19%) Query: 20 GGVSYQNYVNELASLLFLKMC----KETGQEAEYLPEGYRWDDLKS--RIGQEQLQFYRK 73 GG S L +++ K+ KE GQE + Y D+++S ++ + YR+ Sbjct: 221 GGTSDTEIFYSLVNIILAKIQDESEKEDGQEYGFQIYAYG-DNIESSDKVFERINLLYRR 279 Query: 74 MLVH-LGEDDKKLVQAVFHNVSTTITEPK-QITALVSNMDSLDWYNGAHGKS----RDDF 127 L L D+K ++ S I E K + L+ + SL+ Y+ G+S RD Sbjct: 280 ALSEKLNISDQKRLEK-----SYVINEDKFPLNKLIYTIQSLENYSFIEGRSSLDGRDIL 334 Query: 128 GDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLK---------PQPREV--VQDPAA 176 GD +E +++ +TK GQ+FTP ++K +++ L+ Q E+ + DPA Sbjct: 335 GDFFEQIIRDGFKQTK---GQFFTPTSIVKFVLYALQIDQLAIECLNQKLELPFICDPAC 391 Query: 177 GTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEG 236 G+ FLIEA + + + D Q+ F P + L+ IE Sbjct: 392 GSGTFLIEAMKIITKEIK-YKQKDKVKTSRQVKDRFDDF-FQPDHKENRWAERFLYGIEI 449 Query: 237 NLDHGGAIRLGNTLGSDGEN--------LP-----------------------------K 259 N D G A ++ L DG + LP + Sbjct: 450 NFDLGTASKVNMILHGDGASNIFVMDGLLPFRFYTKDKVTSTLQIYKNDSLYFQKEVNEE 509 Query: 260 AHIVATNPPFG----SAAGTNITRTFVHPT-SNKQLCFMQHIIETLHPGGRAAVVVPDNV 314 IV +NPPF + + R F++ T N + F++ + L GR VV+P++V Sbjct: 510 FDIVISNPPFSVDLDNQTKNYLNRIFLYGTKKNSKNLFIERWYQILKDRGRLGVVLPESV 569 Query: 315 LFEGGKGTDIRRDLMDKCHLHTILRLPTGIFY-AQGVKTNVLFFTKGT 361 F+ + IR L ++ ++ LP F KT++LF K T Sbjct: 570 -FDTTENKYIRLFLFKYFNVKAVVSLPQITFEPYTSTKTSLLFAQKKT 616 >UniRef50_B6B3M8 Type I site-specific deoxyribonuclease n=1 Tax=Rhodobacterales bacterium HTCC2083 RepID=B6B3M8_9RHOB Length = 697 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 72/301 (23%), Positives = 110/301 (36%), Gaps = 91/301 (30%) Query: 147 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDF 206 GQ+FTPR +++ ++H+L PQ E+V DPA+G+ GFLI V+ D D Q Sbjct: 264 GQFFTPRTIVEFMVHMLDPQEGEIVCDPASGSGGFLIRVFEIVRESIL----ADADKQYN 319 Query: 207 QIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDH---GGAI---------------RLGN 248 + + + R + DI NLD G + R+ Sbjct: 320 RFKEEIEADKSLAEEERAKRLKAKYEDIRSNLDQSVEGSRLWKLSNRCIYGTDANDRMAR 379 Query: 249 T---------------------LGSDGENLPKAHIVATNPPFGS---------------- 271 T L +G + I+ TNPPFG+ Sbjct: 380 TSKMNMIMHGDGHGGVHHHDGFLNVNGIFEGRFDIILTNPPFGANVEPSDKILPSEIEVS 439 Query: 272 ----------------------AAGTN--ITRTFVHPTSNK-----QLCFMQHIIETLHP 302 A N I F P + K +L F++ ++ L P Sbjct: 440 PAAERRYLAEYGELYRESQDRVKAHVNKPIASMFKLPATEKSKIKTELLFIERCLDLLKP 499 Query: 303 GGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQG--VKTNVLFFTKG 360 GGR +V+P+ + F T +R D+ L ++ LP F + G VK ++LF K Sbjct: 500 GGRMGIVLPEGI-FNNPSLTRVREFTEDRAFLLAVVSLPAETFVSSGASVKCSLLFLKKF 558 Query: 361 T 361 T Sbjct: 559 T 559 >UniRef50_C5VLJ5 N-6 DNA methylase n=1 Tax=Prevotella melaninogenica ATCC 25845 RepID=C5VLJ5_9BACT Length = 642 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 61/255 (23%), Positives = 109/255 (42%), Gaps = 41/255 (16%) Query: 127 FGDMYEGLLQKNANETKSGAGQYFTPRPLIKTII---------HLLKPQPREVVQDPAAG 177 G ++E +++++ + + AGQ++TPR +++ ++ L P + DP G Sbjct: 169 MGTVFENVIRRSKESSNTKAGQFYTPRDIVQLLVALTISGHEDELYIPGRIFSIYDPCCG 228 Query: 178 TAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN 237 T G L E Y++ ++ D + G EL T + + L+ + N Sbjct: 229 TGGMLTEGKAYLQRLAHNPD----------LKVQLFGQELNDKTYAICKADLLMKGDDHN 278 Query: 238 LDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTN------------ITRTF---V 282 + + GNT D + + NPPFG G + R F + Sbjct: 279 ISQ--QLFKGNTFSEDRLYGRTFNFMLANPPFGVDWGKDEYVKKCVQNDNAPGRRFEAGL 336 Query: 283 HPTSNKQLCFMQHIIETL--HPGGRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTI 337 TS+ L F+ H++ + G R +V+ + LF G G ++IR+ L+D+ L I Sbjct: 337 PTTSDGSLLFLMHMVAKMDQENGSRIGIVLNGSPLFNGDAGSGWSNIRKMLLDRNLLDCI 396 Query: 338 LRLPTGIFYAQGVKT 352 + LP +FY G+ T Sbjct: 397 VSLPGDLFYGTGIST 411 >UniRef50_A3US41 Putative restriction-modification system methyltransferase n=1 Tax=Vibrio splendidus 12B01 RepID=A3US41_VIBSP Length = 1303 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 61/265 (23%), Positives = 117/265 (44%), Gaps = 27/265 (10%) Query: 110 MDSLDWYN---GAHGKSRDDFGDMYEGLLQKNANETKS-GAGQYFTPRPLIKTIIHLLKP 165 M++L W+N G R D ++E +LQ ET++ Q+ + + L + I+ + P Sbjct: 115 MEALYWFNQWGGLRLDRRKDISQLFEVILQ----ETRTPQTTQFSSSKFLSQLIVAIAAP 170 Query: 166 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLA 225 + + + DP AG FLI A +++ DF +F G +L +A Sbjct: 171 KSGDTILDPCAGEGSFLIAAHNAIEAAHT----------DFLSQTSFTGYDLSEDAILIA 220 Query: 226 LMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAG----TNITRTF 281 ++ L G + + R G + PK +V PP G + + F Sbjct: 221 MVRFFL---SGAFNFHLSRRSGLYESYGRDQHPKYDVVLAQPPVGIKRDDYRHLSYEKQF 277 Query: 282 VHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLF-EGGKGTDIRRDLMDKCHLHTILRL 340 T++ + F+Q + +L GGRA + +P+ +LF + G ++RR L++ ++ ++R+ Sbjct: 278 PVITNDIVVMFIQQALFSLKLGGRAIIAIPEGLLFGKNGSQIELRRYLVEHGYIEAVVRI 337 Query: 341 PTGIFYA-QGVKTNVLFFTKGTVAN 364 P + G++ +L + N Sbjct: 338 PPKMLIEDSGIRGALLLLSNSKKRN 362 >UniRef50_B5E829 N-6 DNA methylase n=1 Tax=Geobacter bemidjiensis Bem RepID=B5E829_GEOBB Length = 707 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 103/378 (27%), Positives = 156/378 (41%), Gaps = 68/378 (17%) Query: 6 LVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLKSRIGQ 65 +VA+L + N DG S +EL LLFLK+ E E + D+ S + Sbjct: 82 VVARLHAILRNT-DGDSSIIQRFDELTKLLFLKLVAERDDEPIF--------DINS--NE 130 Query: 66 EQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGA------ 119 + + + R++ KK+ H++ P++ + L S+ DS GA Sbjct: 131 DTVSYARRI--------KKIYHD--HSLQYPAVVPQRFSELTSS-DSAIRQCGAVLSAVS 179 Query: 120 -HGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGT 178 G + D G YE +++ + KS Q+FTP ++ ++ LL+P + DPA GT Sbjct: 180 FAGANFDVKGVAYEEVIRNTFD--KSDHQQFFTPHQVVTFMVELLRPFLHGAIGDPACGT 237 Query: 179 AGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNL 238 AGFL E R G F+I L V G +N LLH N Sbjct: 238 AGFLAEVVRTGVEV--------GSISGFEIDER---LSWVSG------INLLLHG--ANK 278 Query: 239 DHGGAIRLGNTLGSDGENLPKAHI-----VATNPPFGSAAG-TNITRTFV----HPTSNK 288 G TLG L K + + TNPPFGS + R F + + Sbjct: 279 FEIKYFNCGGTLGP----LAKPYFNTLDAIITNPPFGSDFNDEDALRDFSLGQGKLSRRR 334 Query: 289 QLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIF--Y 346 + F++ L GG +V+ + VL TD+R+ ++D + I+ LP F Y Sbjct: 335 GILFIERCWSLLKDGGVVGIVIDEGVL-NLPSATDVRQFILDHFDIMAIVSLPETAFMPY 393 Query: 347 AQGVKTNVLFFTKGTVAN 364 A V ++LF K T N Sbjct: 394 AN-VNASILFLKKTTEQN 410 >UniRef50_C5G2A7 Type I site-specific deoxyribonuclease methyltransferase subunit n=3 Tax=Lactobacillus jensenii RepID=C5G2A7_9LACO Length = 569 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 64/248 (25%), Positives = 108/248 (43%), Gaps = 16/248 (6%) Query: 123 SRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFL 182 +R+ + +E ++ + TK GQ+FTP + + ++ + P V DPA+GTAGFL Sbjct: 272 NRNVISEAFESII---SYATKGSQGQFFTPENVARLMVEIANPTESTTVFDPASGTAGFL 328 Query: 183 IEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGG 242 + +V +Q D +D + A L + LA ++ + G D Sbjct: 329 TTSMFHVWNQIQQTKMRDDAKKDKEQQYATNNLFGIEKDSFLAKISKAFMAVLG--DGRA 386 Query: 243 AIRLGNTLGSDGENLP--------KAHIVATNPPFGSAAGTNITRTFVHPTSNK-QLCFM 293 I + ++L + K +I+ TNPPFG + NK +L F+ Sbjct: 387 GIFVEDSLKEKNWKIATQAKIKDKKFNIILTNPPFGKDIKLSTETKENFEFGNKIELAFI 446 Query: 294 QHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYA-QGVKT 352 + + L GG V++P+ V F K +R L K ++ I+ LP F KT Sbjct: 447 EMSLRYLEKGGILGVILPETV-FHAPKARQVREKLFYKNNITHIIDLPHDTFRPYNNAKT 505 Query: 353 NVLFFTKG 360 +++F KG Sbjct: 506 DIIFLRKG 513 >UniRef50_Q14MH6 Hypothetical n-6 adenine-specific dna methyltransferase protein n=1 Tax=Spiroplasma citri RepID=Q14MH6_SPICI Length = 415 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 70/273 (25%), Positives = 116/273 (42%), Gaps = 44/273 (16%) Query: 124 RDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLI 183 RD D +E + + K G GQ+FTPR ++K ++ +L P +++ DP+ G+ GFLI Sbjct: 123 RDIIADAFEIFI---GHALKGGQGQFFTPRNVVKMMVEILDPNDEDLIIDPSCGSDGFLI 179 Query: 184 EADRYVKSQTNDLD----DLDGDTQDFQIHRAFIGLELVPG-------TRRLALMNCLLH 232 E+ RY+ N LD LD + ++ + + + L + TR +L Sbjct: 180 ESLRYI---WNKLDIEGKRLDWNAENLKEEKMEVALNKIREIDKDYFLTRVAKAYMAILG 236 Query: 233 DIEGNLDHGGAIRLGNTLGSDGE---NLPKAHIVATNPPFGS---AAGTNITRTF----- 281 D + + + NT + K I+ TNPPFGS G + + Sbjct: 237 DGKSGIFCEDTLENINTWDYKTRIKIDKGKFSILLTNPPFGSKIPVRGEEKLKQYELAYK 296 Query: 282 --------------VHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRD 327 ++ Q+ F++ I+ L GG A+V+PD + F IR Sbjct: 297 WKKDKKSGIWSKGKLNEKEAPQVLFIERNIQLLKEGGNMAIVLPDGI-FGNDTFAFIRNW 355 Query: 328 LMDKCHLHTILRLPTGIFYAQ-GVKTNVLFFTK 359 + ++ + I+ LP F KT+VL F K Sbjct: 356 IKNQGRILGIIDLPIETFQPNTSTKTSVLIFQK 388 >UniRef50_D2MJZ6 Type I restriction-modification system, M subunit n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MJZ6_9BACT Length = 545 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 63/260 (24%), Positives = 106/260 (40%), Gaps = 35/260 (13%) Query: 125 DDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIE 184 D G YE L++K A + AG+++TP + + + +L P P + DP G+ G LI+ Sbjct: 186 DIIGKSYEYLIRKFAEGSGQSAGEFYTPGEVGEIMARVLAPDPGMEIYDPTCGSGGLLIK 245 Query: 185 ADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAI 244 + ++++ ++ G E VP T +A MN ++HD+EG ++ G Sbjct: 246 CELAMEAKVKAAKKTKDAPLPLKL----FGQEYVPETWAMANMNMIIHDMEGQIEIGDTF 301 Query: 245 RLGNTLGSDGENLPKAHIVATNP------------------PFGSAAGTNITRTFVHPTS 286 + L V NP F + AG S Sbjct: 302 KNPRFRAEKSGKLRTFDRVVANPMWNQDSYIEADYDNDELDRFPAGAG-------FPGKS 354 Query: 287 NKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGG------KGTDIRRDLMDKCHLHTILRL 340 + ++QH+ +L+ GRAAVV+ G K +R+ +D+ + ++L L Sbjct: 355 SADWGWVQHMHASLNDKGRAAVVLDTGAASRGSGNAGTNKEKTVRQWFVDQDLIESVLYL 414 Query: 341 PTGIFYAQGVKTNVLFFTKG 360 P +FY VLF K Sbjct: 415 PENLFYNTTAPGIVLFLNKA 434 >UniRef50_C0MH51 Putative type I restriction enzyme methylase protein n=1 Tax=Steptococcus equi subsp. zooepidemicus H70 RepID=C0MH51_STRS7 Length = 597 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 76/292 (26%), Positives = 124/292 (42%), Gaps = 41/292 (14%) Query: 95 TTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRP 154 + +T + A++ +S Y GA + D G ++E L+++ + AG +FT R Sbjct: 141 SKMTNNDALFAVIQEFNSQKAYLGADTVTSTDMGYIFEELVRRFSESYGEDAGAHFTSRD 200 Query: 155 LIKTIIHLL----KPQPREVVQ---DPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQ 207 +I + +L KP + +V+ D GT+ L +K+ D + D F Sbjct: 201 IIYLMTDILLIDEKPSDKPIVRTIYDQTMGTSQMLSAMMERIKAL-----DANADVTTF- 254 Query: 208 IHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNP 267 G EL P T +A + ++ GN D+ + LG+TL D + + +NP Sbjct: 255 ------GQELNPETYAIAKADTMIRG--GNPDN---MALGSTLSKDAFSGYTFDYLISNP 303 Query: 268 PFG-----------SAAGTNITRTF---VHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN 313 PFG A F + S+ QL F + I L GR A++ + Sbjct: 304 PFGIDWKKDQKAVKEEAELGEKGRFGAGLPKISDGQLLFQLNGISKLKDTGRMAIIHNGS 363 Query: 314 VLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTV 362 LF G G + IR ++ L I++LPT +FY G+ T + TK V Sbjct: 364 ALFSGNAGGGESAIREYVIMNDWLEAIIQLPTDLFYNTGISTYIWIITKNKV 415 >UniRef50_B9ACI4 Putative uncharacterized protein n=1 Tax=Methanobrevibacter smithii DSM 2375 RepID=B9ACI4_METSM Length = 541 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 65/268 (24%), Positives = 118/268 (44%), Gaps = 43/268 (16%) Query: 123 SRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL------KPQPREVVQDPAA 176 S + G ++E L+++ + ++ AG++FTPR ++K + LL + ++V DPA Sbjct: 34 SNHEMGTIFEELIRRFSEQSNEEAGEHFTPRDVVKLMTELLFAGEENESGSIKLVYDPAC 93 Query: 177 GTAGFLIEADRYVKSQTNDLDD-LDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE 235 GT G L Y+++ D+D L G +I+ L+ G + +I+ Sbjct: 94 GTGGMLTSCKEYIQNINPDIDIVLYGQEIQDEIYAICKADMLMKGEK--------AENIK 145 Query: 236 GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFG-----------SAAGTNITRTF--- 281 G +TL +D + K + +NPP+G S A F Sbjct: 146 GPY---------STLSNDKLSGEKFDYMISNPPYGRDWETDADEVKSEAEQGYNGRFGAG 196 Query: 282 VHPTSNKQLCFMQHIIETLHPG--GRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHT 336 + S+ QL F+QH+I + R A++ + LF G G ++IR+ + + +L Sbjct: 197 LPRKSDGQLLFIQHMISKMKTNDKSRIAIITNGSPLFTGDAGSGESNIRKWIFENDYLEA 256 Query: 337 ILRLPTGIFYAQGVKTNVLFFTKGTVAN 364 ++ LP +F+ G+ T + T N Sbjct: 257 LIALPDQLFFNTGIGTYIWILTNKKTPN 284 >UniRef50_B2SH36 N-6 DNA Methylase family n=14 Tax=Gammaproteobacteria RepID=B2SH36_FRATM Length = 695 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 95/456 (20%), Positives = 178/456 (39%), Gaps = 110/456 (24%) Query: 5 DLVAKLWKLCDNL--RDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLKSR 62 D AK+ C N+ + +S + +E++ +LF+K+ E + + D+ K R Sbjct: 122 DEFAKVLNKCHNIIRNNDKLSPEAAFDEISKVLFIKIMYERNINQNQM---FSLDEFK-R 177 Query: 63 IGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTT-----ITEPKQITALVSN-----MDS 112 + + +R++ +++ +Q F V I EP + + + + Sbjct: 178 LREN----FREIHKGTSQENDSFIQYRFEQVKIEFEKDHIFEPNETIRIRESSFEDIVKE 233 Query: 113 LDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQ 172 L+ YN + D G +E L + + GQ+FTPR +++ ++ +L + E++ Sbjct: 234 LEKYNLTKTGA-DVKGIAFETFLGRTF---RGELGQFFTPRKVVEFMVDVLDIKQNELIC 289 Query: 173 DPAAGTAGFLIEADRYVKSQTND-----------------LDDLD--------------- 200 DP AG+ GFLI A VK + ++ L+++D Sbjct: 290 DPCAGSGGFLIRAFEIVKDKIDEKYIRLKNLKQREVFGENLENIDDEKLKAKYEQVINEL 349 Query: 201 GDTQDFQIH----RAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGEN 256 + Q +I + G + P R++ MN ++H G+ H G L +G Sbjct: 350 NEKQKLEIQYLSKSSIFGTDANPRMARVSKMNMIMH---GD-GHNGIHHNDGLLNVNGIF 405 Query: 257 LPKAHIVATNPPFGSAAGTN---------------------------------ITRTFVH 283 + ++ TNPPFG+ G + +T F Sbjct: 406 RNRFDVILTNPPFGTNLGKDNSKVSEEDKYTDEKMITHYKKIYGDVYEEELKQVTDNFGK 465 Query: 284 PTSN----------KQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCH 333 P + ++ F++ ++ L GGR +V+P+ VL R + Sbjct: 466 PIRSLYKTGEISGATEVLFVERCLDLLKAGGRMDIVLPEGVL-NSSNLQKAREYFESRAK 524 Query: 334 LHTILRLPTGIFYAQG--VKTNVLFFTKGTVANPNQ 367 + I+ LP +F + G VKT+++F K TV Q Sbjct: 525 ILLIVSLPQDLFVSSGATVKTSLVFLKKFTVEEQEQ 560 >UniRef50_C9R6G8 Type I modification enzyme n=14 Tax=cellular organisms RepID=C9R6G8_AGGAD Length = 360 Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 55/231 (23%), Positives = 93/231 (40%), Gaps = 29/231 (12%) Query: 80 EDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDW----YNG--AHGKSRDDFGDMYEG 133 E D + ++ V +S + L+ ++ YNG H ++D G +YE Sbjct: 109 EKDNEKLKGVLQRISGYAVNEDTLRGLIMLFSDTNFTAPSYNGEPVHLGAKDILGHVYEY 168 Query: 134 LLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQT 193 L + A GQYFTP+ ++ I+ +L+P + V DPA G+ GF ++ +R++ + Sbjct: 169 FLGRFAQAEGKRGGQYFTPKSIVSLIVEMLEPY-KGRVYDPAIGSGGFFVQTERFITAHQ 227 Query: 194 NDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSD 253 +++ + G E P T +LA MN + I+ + A D Sbjct: 228 GNIN-----------QASIYGQEFNPTTWKLAAMNMAIRGIDYDFGKHNADSFAQPQHLD 276 Query: 254 GENLPKAHIVATNPPFG-------SAAGTNITRTFVHPTSNKQLCFMQHII 297 K + NPPF S A P N ++QH+I Sbjct: 277 ----KKMDFIMANPPFNISDWWSESLADDPRWAYGTPPKGNANFAWLQHMI 323 >UniRef50_C4XFR3 Putative uncharacterized protein n=1 Tax=Mycoplasma fermentans PG18 RepID=C4XFR3_MYCFE Length = 560 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 78/305 (25%), Positives = 131/305 (42%), Gaps = 57/305 (18%) Query: 95 TTITEPKQITALVSNM------DSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQ 148 +T EP + N+ D D + A + D F ++E L+ + N + Sbjct: 152 STFVEPSKRNNFTKNVFSYITRDRFD-FGEAFNNNYDFFSTIFEYLIS-DYNIASGKYAE 209 Query: 149 YFTPRPLIKTIIHLL-KPQPRE----VVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDT 203 YFTP+ L K I +L K P E + DP+AG+ ++ N+L G+ Sbjct: 210 YFTPQTLSKAIGEILVKMSPIEDKIYEIYDPSAGSGSLVLHL-------ANEL----GEG 258 Query: 204 QDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTL---------GSDG 254 + R + ++ + R +N LL+ ++ +LD+ I G+TL G Sbjct: 259 KFGNKARVYTQ-DISQKSSRFLRINMLLNGLKESLDN---IIEGDTLLTPTHYKKAGDAT 314 Query: 255 ENLPKAHIVATNPPFGSAAGT----------NITRTFVH----PTSNKQ-----LCFMQH 295 L + + +NPPF + + N R F P + K L F+QH Sbjct: 315 TGLKQFDFITSNPPFKTDFSSTRDNIELMWQNTERFFAGIPKVPKTKKDSMAIYLLFIQH 374 Query: 296 IIETLHPGGRAAVVVPDNVLF-EGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNV 354 I+ +L GG+AA+VVP + + G IR+ ++D+ L ++ +P+ IF G +V Sbjct: 375 ILYSLKEGGKAAIVVPTGFITAQSGIEKTIRQYIIDRKWLKGVISMPSNIFANTGTNVSV 434 Query: 355 LFFTK 359 LF K Sbjct: 435 LFIDK 439 >UniRef50_C4FI04 Putative type I restriction-modification system, M subunit n=1 Tax=Sulfurihydrogenibium yellowstonense SS-5 RepID=C4FI04_9AQUI Length = 707 Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 84/356 (23%), Positives = 149/356 (41%), Gaps = 50/356 (14%) Query: 61 SRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAH 120 S + +Q + + + +L + K + + + I+A+VS +++ Y+ + Sbjct: 300 SSLADPSIQQFIRRIENLYNEAKGSYRTILGQSIINFKDSSHISAIVSIVENFQDYSFVN 359 Query: 121 GKSRDDFGDMYEGLLQKNANE-TKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTA 179 D+Y+ + + ANE K GQ+ TP LI ++ ++ P+ E V DP G A Sbjct: 360 SYK----TDIYQLVFYRFANEFAKERKGQFITPIWLIDFLVKIVNPRGNETVIDPCVGIA 415 Query: 180 GFLIEADRYVKSQTNDLDD----LDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI- 234 FL + +V S DD +D D Q I A + + L+ G N L+ I Sbjct: 416 DFL--SLSFVNSNPKLKDDNLYGIDNDRQ--MIMLAQLNM-LLNGDG-----NAKLYYIP 465 Query: 235 -EGNLDH-----GGAIRLGNTLGSDG--ENLP------KAHIVATNPPFG--------SA 272 +G++DH G ++L +G +N P K +V TNPPFG + Sbjct: 466 DKGSIDHKIDIDGKVVKLNPNYHKNGNWDNWPDTTELKKFDVVLTNPPFGEDRAYKAFTT 525 Query: 273 AGTNITRTFVHPTSNKQ-------LCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIR 325 I + NKQ L F+++ + L GR +++ N + + R Sbjct: 526 EDKEIAECYELWHLNKQGNWIDLGLIFLENAVRLLKENGRMGIIL-SNSIASIDRWKKAR 584 Query: 326 RDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLR 381 R ++ + + LP IF GV T ++ K + KN +V++ D++ Sbjct: 585 RWFIENMRIVALFDLPPNIFADTGVNTTIIVAYKPKKEELEKLKNQNYEVFIKDIK 640 >UniRef50_B0T4G1 N-6 DNA methylase n=2 Tax=Bacteria RepID=B0T4G1_CAUSK Length = 657 Score = 71.2 bits (173), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 94/406 (23%), Positives = 156/406 (38%), Gaps = 64/406 (15%) Query: 3 NNDLVAKLWKLCDNLRDG--GVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLK 60 ++D + ++ C N G G+ EL L+F K+ E PE + Sbjct: 177 SSDALLFAFRRCHNYIAGNQGLQKPQAFWELLKLIFCKIHDERDS-----PEVEFFASAN 231 Query: 61 SRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAH 120 R G +K + L + K+ A+F +P + +VS + Sbjct: 232 ERTGINGPLKVKKRIDGLFDAVKEDYPAIFQANDVVALKPPVLAYIVSQLQMYSLLES-- 289 Query: 121 GKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAG 180 D G YE ++ N + G++FTPR + + +L P + + DPA GT G Sbjct: 290 --DVDVKGHAYEEIVGSN---LRGDRGEFFTPRNICNMAVSMLDPSEGQTILDPACGTGG 344 Query: 181 FLIEADRYV--KSQTNDLDDLDGD--TQDFQIH--------RAFIGLELVPGTRRLALMN 228 FLI A +V K + +L+ GD D +I +GL+ P + MN Sbjct: 345 FLISAMNHVIEKIRVAELEKWKGDYGRADPKIAARISKFAGACIVGLDFNPELVKATKMN 404 Query: 229 CLLHDIEGNLDHGGAIRLGNTLGS---------DGENLPKAHIVATNPPFGSAAGTN--- 276 ++ N D G + N+L S D + + ++ TNPPFGS + Sbjct: 405 MVM-----NNDGAGGLYQANSLESPATWEEALRDRKLIGSVDLIFTNPPFGSKIPVDDPA 459 Query: 277 ITRTF--------------------VHPTSNKQLCFMQHIIETLHPG-GRAAVVVPDNVL 315 I + + + ++ F++ ++ L PG GR A+V+PD +L Sbjct: 460 ILEKYDLGHSWSYNEEIDSWTMNESIQKSQPPEILFIERCVKFLKPGTGRVAMVLPDGIL 519 Query: 316 FEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGT 361 G G L + L +I P V+T+VL + T Sbjct: 520 GSPGLGYVREWILKNTWVLASIDLHPDTFQPNVSVQTSVLVLQRKT 565 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P08957 Type I restriction enzyme EcoKI M protein n=51 T... 738 0.0 UniRef50_C9P2L7 Type I restriction-modification system DNA-methy... 491 e-137 UniRef50_Q210J9 N-6 DNA methylase n=5 Tax=Proteobacteria RepID=Q... 478 e-133 UniRef50_C4KDM7 Site-specific DNA-methyltransferase (Adenine-spe... 478 e-133 UniRef50_B0VPS9 DNA methylase M, host modification n=3 Tax=Prote... 472 e-131 UniRef50_C6CZ62 N-6 DNA methylase n=16 Tax=Bacteria RepID=C6CZ62... 453 e-126 UniRef50_UPI0001C36A8B N-6 DNA methylase n=1 Tax=Clostridium hat... 445 e-123 UniRef50_C3MFA0 N-6 DNA methylase n=5 Tax=Proteobacteria RepID=C... 441 e-122 UniRef50_D1C5W3 N-6 DNA methylase n=39 Tax=cellular organisms Re... 438 e-121 UniRef50_A8YW15 Type I restriction modification system n=8 Tax=B... 421 e-116 UniRef50_A3XPV4 Type I restriction-modification system specifici... 412 e-113 UniRef50_A8ZTW6 N-6 DNA methylase n=5 Tax=cellular organisms Rep... 402 e-110 UniRef50_Q89Z59 Probable type I restriction enzyme BthVORF4518P ... 393 e-108 UniRef50_Q7VG99 Type I restriction-modification system n=2 Tax=B... 385 e-105 UniRef50_D2TNZ8 Putative type I restriction modification system ... 380 e-104 UniRef50_UPI000190A448 hypothetical protein Salmonelentericaente... 378 e-103 UniRef50_D0LNE1 Type I restriction-modification system, M subuni... 373 e-102 UniRef50_B5H9V2 N-6 DNA methylase n=1 Tax=Streptomyces pristinae... 373 e-101 UniRef50_A1WBU7 N-6 DNA methylase n=19 Tax=Bacteria RepID=A1WBU7... 364 3e-99 UniRef50_Q2J5S8 N-6 DNA methylase n=5 Tax=Bacteria RepID=Q2J5S8_... 359 2e-97 UniRef50_A5VVC4 Type I restriction-modification system, M subuni... 356 2e-96 UniRef50_A1T135 N-6 DNA methylase n=22 Tax=Actinomycetales RepID... 352 3e-95 UniRef50_B6ENI7 N-6 adenine-specific DNA methylase n=19 Tax=root... 351 3e-95 UniRef50_A4AK44 Type I restriction-modification system methylati... 351 5e-95 UniRef50_D0MHM2 N-6 DNA methylase n=3 Tax=Bacteria RepID=D0MHM2_... 345 2e-93 UniRef50_C0QCH3 HsdM2 n=5 Tax=Bacteria RepID=C0QCH3_DESAH 345 2e-93 UniRef50_Q1MKB0 Putative type I restriction enzyme modification ... 343 1e-92 UniRef50_A4XPR7 Type I restriction-modification system, M subuni... 342 2e-92 UniRef50_A1ZTI9 Type I restriction-modification system specifici... 342 2e-92 UniRef50_C6BT25 N-6 DNA methylase n=1 Tax=Desulfovibrio salexige... 341 4e-92 UniRef50_A1AQ49 N-6 DNA methylase n=2 Tax=Proteobacteria RepID=A... 338 3e-91 UniRef50_B3EQE6 Type I restriction-modification system, M subuni... 338 4e-91 UniRef50_A5UWR2 N-6 DNA methylase n=9 Tax=cellular organisms Rep... 337 6e-91 UniRef50_A7HVM7 Type I restriction-modification system, M subuni... 337 7e-91 UniRef50_B2HKY8 Type I restriction/modification system DNA methy... 336 1e-90 UniRef50_B8HN07 N-6 DNA methylase n=2 Tax=Bacteria RepID=B8HN07_... 335 2e-90 UniRef50_Q0KFR5 Type I restriction-modification system methylati... 334 5e-90 UniRef50_B5Y2R2 Type I restriction-modification system, M subuni... 334 6e-90 UniRef50_D0LVD7 Site-specific DNA-methyltransferase (Adenine-spe... 333 7e-90 UniRef50_C9KRW3 Type I restriction-modification system, M subuni... 333 8e-90 UniRef50_B0TYP3 Type I restriction-modification system methyltra... 332 2e-89 UniRef50_A9B990 N-6 DNA methylase n=2 Tax=Chloroflexi (class) Re... 329 1e-88 UniRef50_C8XCE4 Site-specific DNA-methyltransferase (Adenine-spe... 329 2e-88 UniRef50_A7BWE8 Type I restriction enzyme StySPI M protein n=1 T... 328 3e-88 UniRef50_Q72BC7 Type I restriction-modification system, M subuni... 327 6e-88 UniRef50_A6LK23 Type I restriction-modification system, M subuni... 327 6e-88 UniRef50_B1MYY1 Type I restriction-modification system, M subuni... 326 1e-87 UniRef50_A6WNE4 Type I restriction-modification system, M subuni... 326 2e-87 UniRef50_C8VZI4 Type I restriction-modification system, M subuni... 325 3e-87 UniRef50_C6DZ06 Type I restriction-modification system, M subuni... 324 4e-87 UniRef50_A8L1U0 N-6 DNA methylase n=3 Tax=Actinomycetales RepID=... 324 4e-87 UniRef50_Q3ADV1 Type I restriction-modification system, M subuni... 324 5e-87 UniRef50_D2R8Y7 Type I restriction-modification system, M subuni... 322 2e-86 UniRef50_Q73QS4 Type I restriction-modification system, M subuni... 321 4e-86 UniRef50_UPI0001BC44FA type I restriction-modification system DN... 321 4e-86 UniRef50_C3JA79 Type I restriction-modification system, M subuni... 319 1e-85 UniRef50_Q2FXD0 Type I restriction-modification system, M subuni... 318 3e-85 UniRef50_Q5LGD1 Putative modification protein of type I restrict... 318 3e-85 UniRef50_A9A373 Type I restriction-modification system, M subuni... 318 4e-85 UniRef50_Q6YRQ9 Slr6095 protein n=4 Tax=Bacteria RepID=Q6YRQ9_SYNY3 318 4e-85 UniRef50_A6NS04 Putative uncharacterized protein n=1 Tax=Bactero... 317 5e-85 UniRef50_A8ZY58 N-6 DNA methylase n=1 Tax=Desulfococcus oleovora... 317 9e-85 UniRef50_B8F3Y0 Type I restriction-modification system methyltra... 316 1e-84 UniRef50_B1IB55 Type I restriction modification enzyme methylase... 316 1e-84 UniRef50_C0QQY6 Type I restriction enzyme M protein (HsdM) n=1 T... 315 2e-84 UniRef50_B0S355 Type I restriction-modification system DNA methy... 315 4e-84 UniRef50_UPI0001C37526 type I restriction-modification system me... 314 4e-84 UniRef50_A1U632 N-6 DNA methylase n=17 Tax=cellular organisms Re... 314 4e-84 UniRef50_C2C3E3 Site-specific DNA-methyltransferase, adenine-spe... 313 1e-83 UniRef50_A3XVM8 Type I restriction-modification system M subunit... 313 1e-83 UniRef50_B5EVZ6 Type I restriction-modification system, M subuni... 312 2e-83 UniRef50_B4VZI3 N-6 DNA Methylase family n=2 Tax=Bacteria RepID=... 312 3e-83 UniRef50_A8YVB4 Type I restriction-modification system modificat... 311 3e-83 UniRef50_Q4A128 Putative type I restriction-modification system ... 311 4e-83 UniRef50_C1ZKX4 Type I restriction-modification system methyltra... 311 4e-83 UniRef50_B7KF58 N-6 DNA methylase n=4 Tax=Bacteria RepID=B7KF58_... 310 6e-83 UniRef50_C5S255 Type I restriction-modification system n=2 Tax=A... 310 6e-83 UniRef50_C6MIL3 N-6 DNA methylase n=1 Tax=Nitrosomonas sp. AL212... 310 9e-83 UniRef50_D1XRZ6 N-6 DNA methylase n=1 Tax=Streptomyces sp. ACTE ... 310 1e-82 UniRef50_C7TL46 Type I restriction-modification system, M subuni... 309 2e-82 UniRef50_C3PKU9 Type I restriction enzyme M protein n=8 Tax=Bact... 309 2e-82 UniRef50_A3CUH5 N-6 DNA methylase n=4 Tax=cellular organisms Rep... 309 2e-82 UniRef50_C4Z2E8 Type I restriction enzyme M protein n=4 Tax=Firm... 308 4e-82 UniRef50_Q0AUQ5 Type I restriction-modification system, M subuni... 308 5e-82 UniRef50_C6A4W7 Type I restriction-modification system methyltra... 307 6e-82 UniRef50_B3CDF6 Putative uncharacterized protein n=1 Tax=Bactero... 307 9e-82 UniRef50_Q5M500 Type I restriction-modification system methyltra... 306 1e-81 UniRef50_B7GLJ2 Type I restriction-modification system methyltra... 306 2e-81 UniRef50_D1VRI9 PutatIve type i restriction enzyme hindviip m pr... 305 2e-81 UniRef50_C5ZY48 Type I restriction-modification system, M subuni... 305 2e-81 UniRef50_B1VHI4 Type I restriction-modification system, methyltr... 304 6e-81 UniRef50_C7MM99 Type I restriction system adenine methylase HsdM... 303 1e-80 UniRef50_Q2KZB8 Restriction-modification system, modification (M... 303 1e-80 UniRef50_B7KLE1 N-6 DNA methylase n=1 Tax=Cyanothece sp. PCC 742... 303 1e-80 UniRef50_Q47282 Type I restriction enzyme EcoEI M protein n=110 ... 302 2e-80 UniRef50_B5ZAK9 Type I restriction enzyme n=13 Tax=Mycoplasmatac... 302 3e-80 UniRef50_A5VLF8 N-6 DNA methylase n=17 Tax=Bacteria RepID=A5VLF8... 302 3e-80 UniRef50_B1VEP0 Type I restriction-modification system, methyltr... 302 3e-80 UniRef50_B2UNL2 Type I restriction-modification system, M subuni... 301 4e-80 UniRef50_Q3A0E7 Type I restriction-modification system methyltra... 301 5e-80 UniRef50_Q11PS3 Type I restriction-modification system, M subuni... 300 8e-80 UniRef50_B8KQ49 Type I restriction-modification system, M subuni... 300 1e-79 UniRef50_B7RYA8 N-6 DNA Methylase family protein n=2 Tax=Bacteri... 299 2e-79 UniRef50_A0QMK9 Type I restriction-modification system, M subuni... 298 4e-79 UniRef50_UPI0001B4AB1B type I restriction-modification system me... 297 6e-79 UniRef50_C3NN83 N-6 DNA methylase n=1 Tax=Sulfolobus islandicus ... 297 9e-79 UniRef50_Q5HSN6 Type I restriction-modification system, M subuni... 297 1e-78 UniRef50_D1X0A9 N-6 DNA methylase n=2 Tax=Bacteria RepID=D1X0A9_... 296 1e-78 UniRef50_Q60297 Putative type I restriction enzyme MjaXP M prote... 294 5e-78 UniRef50_A5GB18 N-6 DNA methylase n=2 Tax=Bacteria RepID=A5GB18_... 294 5e-78 UniRef50_C2E8R1 Site-specific DNA-methyltransferase n=15 Tax=Fir... 294 6e-78 UniRef50_C7NP01 N-6 DNA methylase n=2 Tax=Halobacteriaceae RepID... 292 3e-77 UniRef50_A6TNL6 Type I restriction-modification system, M subuni... 292 3e-77 UniRef50_D2NY13 Type I restriction enzyme M protein n=5 Tax=List... 291 4e-77 UniRef50_Q8DGT5 Type I site-specific deoxyribonuclease modificat... 291 4e-77 UniRef50_Q3AQE5 Type I restriction modification enzyme methylase... 291 5e-77 UniRef50_C8W944 N-6 DNA methylase n=1 Tax=Atopobium parvulum DSM... 290 7e-77 UniRef50_A6TVC2 N-6 DNA methylase n=4 Tax=Bacteria RepID=A6TVC2_... 290 1e-76 UniRef50_C7P6B0 N-6 DNA methylase n=1 Tax=Methanocaldococcus fer... 289 2e-76 UniRef50_C9KRW2 Type I restriction-modification system, M subuni... 288 3e-76 UniRef50_B4S4B5 N-6 DNA methylase n=3 Tax=Bacteria RepID=B4S4B5_... 287 9e-76 UniRef50_Q12V00 N-6 DNA methylase n=24 Tax=cellular organisms Re... 285 2e-75 UniRef50_Q47GH6 N-6 DNA methylase n=13 Tax=cellular organisms Re... 285 3e-75 UniRef50_Q3ZWI3 Putative type I restriction-modification system ... 285 3e-75 UniRef50_UPI0001B4C614 type I restriction-modification system, M... 285 4e-75 UniRef50_Q57168 Putative type I restriction enzyme HindVIIP M pr... 284 6e-75 UniRef50_UPI000038E019 type I restriction-modification system me... 283 1e-74 UniRef50_D2MJZ6 Type I restriction-modification system, M subuni... 283 1e-74 UniRef50_B0BR03 Type I restriction-modification system M subunit... 283 1e-74 UniRef50_C7NM08 Type I restriction-modification system methyltra... 283 1e-74 UniRef50_Q1Q861 N-6 DNA methylase n=1 Tax=Psychrobacter cryohalo... 282 2e-74 UniRef50_A4CI92 Type I restriction-modification system DNA methy... 282 3e-74 UniRef50_C6BRN9 N-6 DNA methylase n=26 Tax=Bacteria RepID=C6BRN9... 281 6e-74 UniRef50_C0E6A6 Putative uncharacterized protein n=2 Tax=Coryneb... 280 1e-73 UniRef50_B3EE94 N-6 DNA methylase n=3 Tax=Bacteria RepID=B3EE94_... 279 2e-73 UniRef50_O27025 Type I restriction modification enzyme, subunit ... 279 2e-73 UniRef50_A2TPX2 Type I restriction modification system M subunit... 279 2e-73 UniRef50_C7BP30 Type I restriction enzyme, modification subunit ... 278 2e-73 UniRef50_A0KWT9 N-6 DNA methylase n=5 Tax=Bacteria RepID=A0KWT9_... 278 3e-73 UniRef50_C9KLJ9 Type I restriction-modification system, M subuni... 277 8e-73 UniRef50_Q31PC9 Type I restriction-modification n=27 Tax=cellula... 276 1e-72 UniRef50_B2A7T0 N-6 DNA methylase n=13 Tax=Bacteria RepID=B2A7T0... 276 1e-72 UniRef50_A6W079 N-6 DNA methylase n=16 Tax=Bacteria RepID=A6W079... 276 1e-72 UniRef50_D2NT11 Type I restriction-modification system methyltra... 275 3e-72 UniRef50_B4RYU9 Type I restriction-modification system methyltra... 275 4e-72 UniRef50_D2QLF2 Site-specific DNA-methyltransferase (Adenine-spe... 275 5e-72 UniRef50_B1ZYW9 N-6 DNA methylase n=31 Tax=cellular organisms Re... 274 5e-72 UniRef50_C5RYW3 Type I restriction-modification system methyltra... 274 5e-72 UniRef50_A3D8X6 Type I restriction-modification system, M subuni... 274 7e-72 UniRef50_Q6IVN0 Predicted HsdM n=1 Tax=uncultured gamma proteoba... 274 7e-72 UniRef50_B0S3L0 Type I restriction-modification system DNA methy... 273 1e-71 UniRef50_C7RVC4 N-6 DNA methylase n=2 Tax=Bacteria RepID=C7RVC4_... 273 1e-71 UniRef50_C6P389 N-6 DNA methylase n=1 Tax=Sideroxydans lithotrop... 273 1e-71 UniRef50_Q47163 Type I restriction enzyme EcoprrI M protein n=13... 273 1e-71 UniRef50_C6MCS3 N-6 DNA methylase n=2 Tax=Proteobacteria RepID=C... 273 1e-71 UniRef50_C7NHN8 Type I restriction-modification system methyltra... 270 7e-71 UniRef50_A7IDE4 N-6 DNA methylase n=3 Tax=Proteobacteria RepID=A... 270 1e-70 UniRef50_A1BH53 N-6 DNA methylase n=4 Tax=Bacteria RepID=A1BH53_... 269 1e-70 UniRef50_B4S214 Type I restriction-modification system methyltra... 269 2e-70 UniRef50_Q5NWK9 Type I restriction-modification system (Specific... 269 2e-70 UniRef50_Q7NAH5 HsdM n=1 Tax=Mycoplasma gallisepticum RepID=Q7NA... 269 2e-70 UniRef50_A3RQ90 Type I restriction-modification system methylati... 268 3e-70 UniRef50_Q3M7D1 N-6 DNA methylase n=5 Tax=Bacteria RepID=Q3M7D1_... 268 4e-70 UniRef50_B3EKI4 N-6 DNA methylase n=1 Tax=Chlorobium phaeobacter... 268 4e-70 UniRef50_B2VGL9 Type I restriction-modification system, M subuni... 268 5e-70 UniRef50_C6WNK0 N-6 DNA methylase n=5 Tax=Actinomycetales RepID=... 268 5e-70 UniRef50_B9XME0 N-6 DNA methylase n=1 Tax=bacterium Ellin514 Rep... 267 7e-70 UniRef50_A8ZYK3 N-6 DNA methylase n=1 Tax=Desulfococcus oleovora... 266 1e-69 UniRef50_Q65QI8 HsdM protein n=8 Tax=Proteobacteria RepID=Q65QI8... 266 1e-69 UniRef50_C0W5F1 Type I restriction-modification system methyltra... 266 1e-69 UniRef50_C9MRT4 Type I restriction-modification system, M subuni... 265 2e-69 UniRef50_C3XHF2 Type I restriction-modification system M subunit... 264 7e-69 UniRef50_C8RRG5 Type I restriction-modification system, M subuni... 263 1e-68 UniRef50_P75436 Putative type I restriction enzyme MpnORFDP M pr... 263 2e-68 UniRef50_C4WKW1 Type I restriction enzyme EcoEI specificity prot... 261 4e-68 UniRef50_D1SQT0 N-6 DNA methylase n=1 Tax=Acidovorax avenae subs... 260 7e-68 UniRef50_A5GE24 N-6 DNA methylase n=13 Tax=Bacteria RepID=A5GE24... 260 8e-68 UniRef50_D1VS23 Type I restriction-modification system methyltra... 260 9e-68 UniRef50_C8W115 Type I restriction-modification system, M subuni... 260 1e-67 UniRef50_B7K553 N-6 DNA methylase n=13 Tax=cellular organisms Re... 260 1e-67 UniRef50_C9L2F5 Type I restriction-modification system, M subuni... 259 2e-67 UniRef50_A0YWS1 Type I restriction-modification system methyltra... 259 2e-67 UniRef50_C7RQC1 N-6 DNA methylase n=1 Tax=Candidatus Accumulibac... 257 8e-67 UniRef50_Q3SFH7 Type I restriction-modification system methyltra... 257 8e-67 UniRef50_A5WF32 N-6 DNA methylase n=11 Tax=Proteobacteria RepID=... 256 1e-66 UniRef50_A8ZRN8 N-6 DNA methylase n=14 Tax=cellular organisms Re... 254 6e-66 UniRef50_C9NJI6 N-6 DNA methylase n=1 Tax=Streptomyces flavogris... 254 8e-66 UniRef50_Q3J7Q6 N-6 DNA methylase n=7 Tax=Bacteria RepID=Q3J7Q6_... 253 1e-65 UniRef50_C6CR27 N-6 DNA methylase n=1 Tax=Dickeya zeae Ech1591 R... 253 2e-65 UniRef50_B3EIH7 N-6 DNA methylase n=2 Tax=Chlorobium/Pelodictyon... 252 2e-65 UniRef50_A0Q1H9 Type I restriction-modification system DNA methy... 251 5e-65 UniRef50_Q31IU5 Type I restriction-modification system, M subuni... 251 5e-65 UniRef50_A5IZ14 Modification (Methylase) protein of type Irestri... 250 8e-65 UniRef50_A3J6X4 Type I restriction-modification n=1 Tax=Flavobac... 250 1e-64 UniRef50_A3DAQ0 N-6 DNA methylase n=1 Tax=Shewanella baltica OS1... 250 2e-64 UniRef50_B0VF74 Type I restriction-modification system methyltra... 249 2e-64 UniRef50_B0V9R4 Putative uncharacterized protein n=2 Tax=Acineto... 249 2e-64 UniRef50_A1TSH9 N-6 DNA methylase n=4 Tax=cellular organisms Rep... 246 2e-63 UniRef50_B3QZM0 Type I restriction-modification system methyltra... 243 2e-62 UniRef50_A6P0G2 Putative uncharacterized protein n=2 Tax=Bacteri... 242 2e-62 UniRef50_A8GYC6 Type I restriction-modification system methyltra... 241 3e-62 UniRef50_UPI00017F5863 N-6 DNA methylase n=1 Tax=Clostridium dif... 241 4e-62 UniRef50_Q10WB4 N-6 DNA methylase n=5 Tax=Bacteria RepID=Q10WB4_... 241 4e-62 UniRef50_O30381 N6 adenine methylation (M) subunit homolog n=4 T... 241 4e-62 UniRef50_A6EUA8 Type I restriction-modification n=1 Tax=unidenti... 241 5e-62 UniRef50_B1VGZ7 Type I restriction-modification system, methyltr... 240 7e-62 UniRef50_C2EIH9 Restriction-modification protein n=1 Tax=Lactoba... 240 9e-62 UniRef50_B9ACI4 Putative uncharacterized protein n=1 Tax=Methano... 240 2e-61 UniRef50_C5VLJ5 N-6 DNA methylase n=1 Tax=Prevotella melaninogen... 238 3e-61 UniRef50_Q58617 Uncharacterized adenine-specific methylase MJ122... 238 4e-61 UniRef50_B0VGE9 Restriction modification system DNA specificity ... 238 6e-61 UniRef50_C9RQV8 N-6 DNA methylase n=4 Tax=Bacteria RepID=C9RQV8_... 237 6e-61 UniRef50_B9M294 N-6 DNA methylase n=2 Tax=Proteobacteria RepID=B... 236 1e-60 UniRef50_C7QWT4 Type III restriction protein res subunit n=1 Tax... 236 1e-60 UniRef50_Q0HVT0 N-6 DNA methylase n=75 Tax=cellular organisms Re... 236 2e-60 UniRef50_Q4KCG2 Type I restriction-modification system, M subuni... 236 2e-60 UniRef50_C0MH51 Putative type I restriction enzyme methylase pro... 235 3e-60 UniRef50_Q5YY36 Putative restriction-modification system endonuc... 235 4e-60 UniRef50_B3ENS7 N-6 DNA methylase n=2 Tax=cellular organisms Rep... 234 6e-60 UniRef50_Q6ZE83 Type I restriction-modification system M subunit... 234 8e-60 UniRef50_B2IAD6 N-6 DNA methylase n=19 Tax=cellular organisms Re... 232 2e-59 UniRef50_B0T4G1 N-6 DNA methylase n=2 Tax=Bacteria RepID=B0T4G1_... 232 3e-59 UniRef50_C7P732 N-6 DNA methylase n=1 Tax=Methanocaldococcus fer... 230 9e-59 UniRef50_C7N817 Type I restriction-modification system methyltra... 226 2e-57 UniRef50_Q4HS21 Type I restriction-modification system, M subuni... 224 4e-57 UniRef50_C3QS31 Type I restriction-modification system n=2 Tax=B... 224 5e-57 UniRef50_C8P6G6 Type I restriction-modification n=2 Tax=Bacteria... 224 5e-57 UniRef50_C0XNK7 Type I restriction-modification system, methyltr... 224 6e-57 UniRef50_Q7X0F3 M.AhdI n=1 Tax=Aeromonas hydrophila RepID=Q7X0F3... 224 7e-57 UniRef50_A6EJ97 Type I restriction-modification system methyltra... 224 7e-57 UniRef50_A4P099 Putative type I restriction-modification system,... 224 7e-57 UniRef50_UPI0001C41D22 type I restriction-modification system M ... 223 1e-56 UniRef50_A8YEM4 Genome sequencing data, contig C300 n=4 Tax=Bact... 220 1e-55 UniRef50_A8KXL5 N-6 DNA methylase n=1 Tax=Frankia sp. EAN1pec Re... 219 2e-55 UniRef50_B0JQT9 Type I restriction enzyme EcoEI M protein n=1 Ta... 219 2e-55 UniRef50_A9DR80 Restriction/modification methyltransferase n=2 T... 216 2e-54 UniRef50_D0I0N8 Type I restriction-modification system M subunit... 216 2e-54 UniRef50_C3RBV5 N-6 DNA methylase n=5 Tax=Bacteroidales RepID=C3... 216 2e-54 UniRef50_C8MCW8 Predicted protein n=1 Tax=Staphylococcus aureus ... 213 1e-53 UniRef50_B2A7S7 N-6 DNA methylase n=1 Tax=Natranaerobius thermop... 213 2e-53 UniRef50_Q1CR91 Type I restriction enzyme M protein n=1 Tax=Heli... 211 4e-53 UniRef50_A8UNU7 N-6 DNA methylase n=1 Tax=Flavobacteriales bacte... 211 6e-53 UniRef50_C8WMW5 N-6 DNA methylase n=3 Tax=Bacteria RepID=C8WMW5_... 210 9e-53 UniRef50_Q160U6 Type I restriction-modification system DNA methy... 208 4e-52 UniRef50_B0JHK8 Type I restriction enzyme EcoEI M protein homolo... 208 4e-52 UniRef50_C7IHQ9 N-6 DNA methylase n=1 Tax=Clostridium papyrosolv... 208 5e-52 UniRef50_B4VWN4 N-6 DNA Methylase superfamily n=1 Tax=Microcoleu... 207 9e-52 Sequences not found previously or not previously below threshold: UniRef50_A9NHP1 Type I restriction enzyme, M protein n=9 Tax=cel... 226 2e-57 UniRef50_A6GSS6 Type I restriction-modification system methyltra... 215 4e-54 UniRef50_A6L5S5 Type I restriction-modification system M subunit... 208 5e-52 >UniRef50_P08957 Type I restriction enzyme EcoKI M protein n=51 Tax=Bacteria RepID=T1MK_ECOLI Length = 529 Score = 738 bits (1904), Expect = 0.0, Method: Composition-based stats. Identities = 529/529 (100%), Positives = 529/529 (100%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLK 60 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLK Sbjct: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLK 60 Query: 61 SRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAH 120 SRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAH Sbjct: 61 SRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAH 120 Query: 121 GKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAG 180 GKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAG Sbjct: 121 GKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAG 180 Query: 181 FLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDH 240 FLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDH Sbjct: 181 FLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDH 240 Query: 241 GGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETL 300 GGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETL Sbjct: 241 GGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETL 300 Query: 301 HPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 360 HPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG Sbjct: 301 HPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 360 Query: 361 TVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEW 420 TVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEW Sbjct: 361 TVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEW 420 Query: 421 SFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLP 480 SFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLP Sbjct: 421 SFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLP 480 Query: 481 EPDVLAAEAMGELVQALSELDALMRELGASDEADLQRQLLEEAFGGVKE 529 EPDVLAAEAMGELVQALSELDALMRELGASDEADLQRQLLEEAFGGVKE Sbjct: 481 EPDVLAAEAMGELVQALSELDALMRELGASDEADLQRQLLEEAFGGVKE 529 >UniRef50_C9P2L7 Type I restriction-modification system DNA-methyltransferase subunit M n=1 Tax=Vibrio metschnikovii CIP 69.14 RepID=C9P2L7_VIBME Length = 510 Score = 491 bits (1264), Expect = e-137, Method: Composition-based stats. Identities = 258/528 (48%), Positives = 347/528 (65%), Gaps = 36/528 (6%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLK 60 M ++++ K+W LC+ LR G++Y YV+EL+ LLFLK+ +E G E + +P+GYRW DL+ Sbjct: 1 MKQDNIIQKIWSLCNILRGDGITYYQYVSELSYLLFLKIAQENGSE-KLIPKGYRWVDLE 59 Query: 61 SRIGQEQLQFYRKMLVHLGED-DKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGA 119 S G L FY++ML HLG + ++V+A++ +T + + + A++ + ++W Sbjct: 60 SYKGDGLLGFYQEMLTHLGASVENEVVKAIYAFPTTVFSHSENLKAVIDGISKIEW---- 115 Query: 120 HGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTA 179 H +D FGD+Y GL+ K+A +T+SGAGQYFTPR L+ TI+ L++P E++QDPA G+ Sbjct: 116 HQVGKDGFGDVYSGLIDKSAQDTRSGAGQYFTPRSLVNTIVRLIQPNLGELIQDPATGSG 175 Query: 180 GFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLD 239 GFL+ AD Y++++ + + G+E+ TRR+ LMN LH+++ N+ Sbjct: 176 GFLVSADSYIRNKYLREKYKANPPK-------YQGVEIEKNTRRICLMNTFLHELDANII 228 Query: 240 HGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAG--TNITRTFVHPTSNKQLCFMQHII 297 +G A L D L +A ++ NPPFG+ AG + P NKQL F+QHI Sbjct: 229 YGDA------LTDDVAELAEADVIIANPPFGNKAGGQRPLRNDIPFPNVNKQLAFLQHIY 282 Query: 298 ETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFF 357 L PGGRAAVV+PDNVLFE G GT++RRDLM+KC+LHTILRLPTGIFYAQGV TNVLFF Sbjct: 283 LGLKPGGRAAVVLPDNVLFEAGVGTEVRRDLMNKCNLHTILRLPTGIFYAQGVNTNVLFF 342 Query: 358 TKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPF-------------TDEHLQPFERV 404 TKG+V + Q+++CT +VWVYDLRTNMPSFGKRTPF TD H+ FE+V Sbjct: 343 TKGSVKDKYQEESCTQNVWVYDLRTNMPSFGKRTPFGNSDIGFTPEELGTDPHMGAFEKV 402 Query: 405 YGEDPHGLSPRTEGEWSFNAEETEVADS--EENKNTDQHLATSRWRKFSREWIRTAKSDS 462 +G+ P G S RTEGE+SF A+E EV EEN+ D LA SRWR FSR+WI K DS Sbjct: 403 FGDKPDGTSKRTEGEFSFGAQEIEVDKDAVEENQRGDDRLAHSRWRCFSRKWIANTKGDS 462 Query: 463 LDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALMRELGAS 510 LDISWLKDK+SID L EPDVLA EA EL AL ELD L+ L + Sbjct: 463 LDISWLKDKNSIDVTGLSEPDVLAQEAKEELEAALRELDGLLTALEMN 510 >UniRef50_Q210J9 N-6 DNA methylase n=5 Tax=Proteobacteria RepID=Q210J9_RHOPB Length = 489 Score = 478 bits (1230), Expect = e-133, Method: Composition-based stats. Identities = 251/520 (48%), Positives = 317/520 (60%), Gaps = 46/520 (8%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLKS 61 D+VAKLW LC LRD GV+Y YV EL LLFLKM +ETG+E+ P+GYRW L Sbjct: 3 TTTDIVAKLWSLCHVLRDDGVTYNEYVTELTFLLFLKMLEETGKESRL-PKGYRWAALAK 61 Query: 62 RIGQEQLQFYRKMLVHLGEDD--KKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGA 119 R G +QL +Y+++L+ LG+ + LV+A+F + T + +P + AL S++D LDW++ Sbjct: 62 REGLDQLDYYKRLLLDLGKPEVKDGLVRAIFTDAQTRLRKPTNLKALTSSIDQLDWFSAR 121 Query: 120 HGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTA 179 + G +YEGLL+KNA++ KSGAGQYFTPRPLI I+ L+KP E VQDPAAGTA Sbjct: 122 E----EGLGTLYEGLLEKNASDKKSGAGQYFTPRPLIDCIVRLMKPHVGETVQDPAAGTA 177 Query: 180 GFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLD 239 GF++ ADRY+K +T+DL L FQ H AF G ELVP T RL +MN LLH IEG Sbjct: 178 GFIVAADRYIKDRTDDLYKLPEQQVFFQRHHAFNGAELVPDTHRLCMMNLLLHGIEG--- 234 Query: 240 HGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRT----FVHPTSNKQLCFMQH 295 + L +TL DGE L KA ++ TNPPFG+ G TSNKQL F++H Sbjct: 235 ---GVELADTLSPDGERLSKADLILTNPPFGTKKGGGRPTRSDFSITADTSNKQLAFVEH 291 Query: 296 IIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVL 355 ++ L GGRAAVVVPDNVLFE G D+R LMD C LHTILRLPTGIFYAQGVKTNVL Sbjct: 292 VVRALKAGGRAAVVVPDNVLFEDNTGRDLRTWLMDLCSLHTILRLPTGIFYAQGVKTNVL 351 Query: 356 FFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPR 415 FF +G DK T VWVYDLR NMP+FGK P T FE+ YG +P G + R Sbjct: 352 FFQRGKT-----DKANTKTVWVYDLRANMPAFGKTRPLTAADFAEFEKAYGSNPAGSAKR 406 Query: 416 TEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSID 475 + EE RWR F+R+ I+ D+LDISWL+D + Sbjct: 407 KD-------------QGEE----------GRWRGFTRDQIKARN-DNLDISWLRDTEVEA 442 Query: 476 ADSLPEPDVLAAEAMGELVQALSELDALMRELGASDEADL 515 + L EP+ +AA +G L AL E++ L EL + D Sbjct: 443 EEQLTEPEDIAAAIIGHLKAALEEIETLSEELESPSNKDA 482 >UniRef50_C4KDM7 Site-specific DNA-methyltransferase (Adenine-specific) n=9 Tax=Bacteria RepID=C4KDM7_THASP Length = 530 Score = 478 bits (1229), Expect = e-133, Method: Composition-based stats. Identities = 256/530 (48%), Positives = 327/530 (61%), Gaps = 42/530 (7%) Query: 5 DLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAE---------------Y 49 D+ AKLW LC LRD GV+Y Y++EL LLFLKM KETGQE Sbjct: 9 DIGAKLWSLCHVLRDDGVTYHQYLSELTYLLFLKMMKETGQEERLRIWKAKDKKQGSPKE 68 Query: 50 LPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSN 109 G RWDDL ++L Y++ML+ G + VQ ++ N +T IT+P ++ LV++ Sbjct: 69 EQAGTRWDDLLGASAPDRLDLYKEMLLDYGLHGRGAVQEIYANANTFITKPATLSKLVTD 128 Query: 110 MDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPRE 169 +D LDWY+ RDD GD+YE LL++NA E KSGAGQYFTPR LI +I+ ++KPQ + Sbjct: 129 IDRLDWYS----VDRDDLGDLYEDLLERNAGEKKSGAGQYFTPRHLIDSIVSVMKPQLGD 184 Query: 170 VVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNC 229 V+QDPAAGT GFLI A+ Y++ Q ND D L + Q H+ F G+ELV T RLALMN Sbjct: 185 VIQDPAAGTCGFLIAANNYLR-QHNDFDSLSDEAQRKYRHQTFHGMELVQDTHRLALMNM 243 Query: 230 LLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNI--TRTFVHPTSN 287 LLH IEG + +G TL D + LP A ++ +NPPFG+ G + TSN Sbjct: 244 LLHGIEGGVTYGD------TLSDDHKGLPPATLILSNPPFGTKKGGGLPTRGDLTFETSN 297 Query: 288 KQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYA 347 KQ F+QHI L PGGRAAVV+PDNVLFE G DIRRDLMDKC+LHTILRLPTGIFYA Sbjct: 298 KQFAFLQHIYRALKPGGRAAVVLPDNVLFESNIGADIRRDLMDKCNLHTILRLPTGIFYA 357 Query: 348 QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGE 407 QGVKTNVLFFT+G + DK T +VWVYD+R NMP+FGKRTPFT ++ + Sbjct: 358 QGVKTNVLFFTRG-----DTDKGNTKEVWVYDMRANMPAFGKRTPFTRDYFRT-----PP 407 Query: 408 DPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISW 467 D PR + E F ++ + + RWR+F+RE I + DSLDISW Sbjct: 408 DVPASQPRDKFEDVFGSDPRGGPAALAARQDTG--EAGRWRRFTREQI-AQRGDSLDISW 464 Query: 468 LKDKDSIDAD-SLPEPDVLAAEAMGELVQALSELDALMRELGASDEADLQ 516 LKD + D S +P +LA A+ EL A+SEL +L+ ELG +A L+ Sbjct: 465 LKDSGAASTDQSRDDPSLLAGLALKELNAAVSELRSLLEELGEDPDAVLE 514 >UniRef50_B0VPS9 DNA methylase M, host modification n=3 Tax=Proteobacteria RepID=B0VPS9_ACIBS Length = 509 Score = 472 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 246/502 (49%), Positives = 339/502 (67%), Gaps = 34/502 (6%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLK 60 M + ++ K+W LC+ LR G++Y YV+EL+ LLFLK+ +E G E +PEGYRW DL+ Sbjct: 1 MKQDTVIQKIWSLCNILRGDGITYYQYVSELSYLLFLKIAQENGSEI-LIPEGYRWADLE 59 Query: 61 SRIGQEQLQFYRKMLVHLGED-DKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGA 119 + + L FY++ML HLG + + ++++ ++ +T + + + A++ + ++W Sbjct: 60 AHEEEGLLGFYQEMLTHLGANVENEVIRDIYAFPTTVFSHSENLKAVIDGISEIEW---- 115 Query: 120 HGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTA 179 H +D FGD+Y GL+ K+A +T+SGAGQYFTPR LI +II L++P +++QDPA G+ Sbjct: 116 HQVGKDGFGDLYSGLIDKSAQDTRSGAGQYFTPRSLINSIIRLIQPNLGDLIQDPATGSG 175 Query: 180 GFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLD 239 GFL+ AD Y++++++ + + + G+E+ TRR+ LMN LH ++ N+ Sbjct: 176 GFLVSADSYIRTKSSQEEYQASPPK-------YQGVEIEKNTRRICLMNTFLHHLDANIV 228 Query: 240 HGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGT--NITRTFVHPTSNKQLCFMQHII 297 +G A L D L I+ NPPFG+ AG+ + P +NKQL F+QHI Sbjct: 229 YGDA------LTDDVLKLDDPDIILANPPFGNKAGSQRPLRSDLPFPNTNKQLAFLQHIY 282 Query: 298 ETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFF 357 +L GGRAAVV+PDNVLFE G GTD+R+DLM+KC+LHTILRLPTGIFYAQGVKTNVLFF Sbjct: 283 LSLKAGGRAAVVLPDNVLFESGIGTDVRKDLMNKCNLHTILRLPTGIFYAQGVKTNVLFF 342 Query: 358 TKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPF-------------TDEHLQPFERV 404 TKG+ + +Q +NCT++VW+YDLRTNMPSFGKRTPF TD HL FERV Sbjct: 343 TKGSTKDKHQQENCTENVWIYDLRTNMPSFGKRTPFGNADIGFLPEDFGTDSHLGAFERV 402 Query: 405 YGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLD 464 +G++P+G S RTEGE+SFNA E EV EN+N D+ LA SRWR FSREWI K DSLD Sbjct: 403 FGDNPNGTSKRTEGEYSFNALEAEVDKELENENIDEKLAHSRWRCFSREWIAEYKGDSLD 462 Query: 465 ISWLKDKDSIDADSLPEPDVLA 486 ISWLKDK+SIDAD+L EP +L Sbjct: 463 ISWLKDKESIDADNLTEPAILV 484 >UniRef50_C6CZ62 N-6 DNA methylase n=16 Tax=Bacteria RepID=C6CZ62_PAESJ Length = 494 Score = 453 bits (1165), Expect = e-126, Method: Composition-based stats. Identities = 247/513 (48%), Positives = 312/513 (60%), Gaps = 50/513 (9%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLK 60 M N D+V KLW LC+ LRD G++Y YV EL +LFLKM KET E LPE YRWD L Sbjct: 1 MGNQDIVQKLWNLCNVLRDDGITYHQYVTELTYVLFLKMMKETDNEG-ILPEQYRWDSLT 59 Query: 61 SRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAH 120 R G Q YR++L+ LG + ++ ++ N ++ I EPK + +++++D LDWY+ Sbjct: 60 ERHGMALQQHYRQLLLDLGNQGNETIKQIYMNATSNINEPKNLEKIITSIDQLDWYSAKE 119 Query: 121 GKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAG 180 + GD+YEGLL+KNA+ETKSGAGQYFTPRPLI I L+ PQP E DPAAGT G Sbjct: 120 ----EGLGDLYEGLLEKNASETKSGAGQYFTPRPLIDVITKLVDPQPGERCNDPAAGTFG 175 Query: 181 FLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDH 240 F+I ADR+V++ T+D DL +FQ H+AF G+ELV T RLA+MN +LHDI G + Sbjct: 176 FMIAADRHVRNNTDDYFDLGEKEAEFQKHQAFTGVELVKDTHRLAMMNAMLHDIHGEII- 234 Query: 241 GGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNI--TRTFVHPTSNKQLCFMQHIIE 298 LG+TL DG NL ++ TNPPFG+ G T+NKQL F+QHI Sbjct: 235 -----LGDTLSDDGTNLKNFDVILTNPPFGTKQGGERPTRDDLTFATTNKQLNFLQHIYR 289 Query: 299 TLHPGG--RAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLF 356 L G RAAV++PDNVLFE G GT IR DLMDKC+L+TILRLPTGIFYAQGVKTNVLF Sbjct: 290 ALKANGKARAAVILPDNVLFESGVGTKIRADLMDKCNLNTILRLPTGIFYAQGVKTNVLF 349 Query: 357 FTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRT 416 FT+ DK+ T ++WVYDLRTNMPSFGKR P T H F Y Sbjct: 350 FTR-----EKTDKDSTKNIWVYDLRTNMPSFGKRNPLTVSHFDAFVAAY----------- 393 Query: 417 EGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDA 476 AE+ + E RW F+RE IR DSLDI + D+ Sbjct: 394 ------MAEDRTKVEDE------------RWNVFTREDIRKKD-DSLDIGLIADESLSAY 434 Query: 477 DSLPEPDVLAAEAMGELVQALSELDALMRELGA 509 D+LP+P A +AM +L +AL+ L ++ EL A Sbjct: 435 DNLPDPIDSAEDAMVKLEEALALLGEVVTELKA 467 >UniRef50_UPI0001C36A8B N-6 DNA methylase n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36A8B Length = 471 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 241/513 (46%), Positives = 310/513 (60%), Gaps = 51/513 (9%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLK 60 MN ++V+KLW LC+ LRD G++Y YV EL +LFLKM KETG E E +PE YRWD L Sbjct: 1 MNTQEIVSKLWNLCNVLRDDGITYHQYVTELTYILFLKMAKETGVE-EQIPEEYRWDCLV 59 Query: 61 SRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAH 120 S+ G E ++YR++L +LGE+ +Q ++ +T I EPK + +++ +D LDWY+ Sbjct: 60 SKSGMELRRYYRELLNYLGEECTGRIQEIYQGAATNIDEPKNLEKIITAIDKLDWYSAKE 119 Query: 121 GKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAG 180 + G++YEGLL+KNANE KSGAGQYFTPR LI ++ L+KPQ E DPA GT G Sbjct: 120 ----EGLGNLYEGLLEKNANEKKSGAGQYFTPRVLIDVMVRLMKPQVGERCNDPACGTFG 175 Query: 181 FLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDH 240 F+I AD+YVK ND + D +FQ AF G ELV T RLALMN +LHDIEG + Sbjct: 176 FMIAADKYVKEH-NDFWGISADLAEFQHKEAFTGCELVHETHRLALMNAMLHDIEGQIM- 233 Query: 241 GGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNI--TRTFVHPTSNKQLCFMQHIIE 298 L +TL + G+ L +V TNPPFG+ G FV TSNKQL F+QHI Sbjct: 234 -----LADTLSNAGKQLKGYDLVLTNPPFGTEKGGERATRDDFVFSTSNKQLNFLQHIYR 288 Query: 299 TLHPGG--RAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLF 356 +L P G RAAVV+PDNVLF G G IR DLM++C+LHT+LRLPTGIFYAQGVKTNVLF Sbjct: 289 SLKPNGKARAAVVLPDNVLFADGDGERIRVDLMERCNLHTVLRLPTGIFYAQGVKTNVLF 348 Query: 357 FTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRT 416 FT+GT DK+ T +VW YDLRTNMPS GK P EH FE+ Y D Sbjct: 349 FTRGTT-----DKDNTKEVWFYDLRTNMPSLGKTNPLKTEHFADFEKAYEADDR------ 397 Query: 417 EGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDA 476 + + RW F+RE I K +SLD+ ++D +D Sbjct: 398 -----------------------RAVNDERWSVFTREEIVA-KGNSLDLGLIRDDSVLDY 433 Query: 477 DSLPEPDVLAAEAMGELVQALSELDALMRELGA 509 + LP+P A EA +L +A+ L ++ EL A Sbjct: 434 NDLPDPIESAEEAAAQLEEAVDLLKRVINELKA 466 >UniRef50_C3MFA0 N-6 DNA methylase n=5 Tax=Proteobacteria RepID=C3MFA0_RHISN Length = 511 Score = 441 bits (1133), Expect = e-122, Method: Composition-based stats. Identities = 249/541 (46%), Positives = 318/541 (58%), Gaps = 71/541 (13%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLK 60 MN N +V KLW+LC LR G++YQ YV EL LLFLKM E +E+ LPE RW+DL Sbjct: 1 MNANAIVQKLWRLCTVLRKDGITYQQYVTELTYLLFLKMMAERNRESGSLPETMRWEDLV 60 Query: 61 SRIGQEQLQFYRKMLVHLG-------------------------------EDDKKLVQAV 89 G +L+ YR+ LV LG +VQ + Sbjct: 61 QANGLAKLELYRRTLVTLGTVSTRLGKDDALVLPPGDNATPDERKRYVDARPLPDMVQEI 120 Query: 90 FHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQY 149 F N ST I EP+ +T LV+ +D LDW++ + RD FGD+YEGLLQKNA ETK GAGQY Sbjct: 121 FDNASTFIREPQNLTTLVTAIDELDWFS----EERDQFGDLYEGLLQKNAEETKRGAGQY 176 Query: 150 FTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIH 209 FTPR LI+ ++ L++PQP EV+QDPA GT GFLI AD Y++++T++ DL Q+FQ Sbjct: 177 FTPRVLIRVLVRLMQPQPGEVIQDPAGGTGGFLIAADHYMRARTDNYFDLGEKEQEFQKR 236 Query: 210 RAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPF 269 AF G+E VPGT RL LMN LHDI+ + LG+TL G+ L +A+++ TNPPF Sbjct: 237 HAFHGMENVPGTLRLLLMNLYLHDIDS-----DHVDLGDTLSDKGKGLGRANLILTNPPF 291 Query: 270 GSAAGTNITRTF--VHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRD 327 G A G S+ QL F++H I L PGGRAA+VVPDNVLFE G+G +R+ Sbjct: 292 GPAGGAPTRDDLSVTATVSSYQLPFVEHCIRALKPGGRAAIVVPDNVLFEDGRGRQLRQM 351 Query: 328 LMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSF 387 +MD C LHTILRLPTGIFYAQGVKTNV+F T+G N T W+YDLR MP F Sbjct: 352 MMDWCDLHTILRLPTGIFYAQGVKTNVIFLTRGKTETGN-----TKATWIYDLRAQMPKF 406 Query: 388 GKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRW 447 GK TP T+ H + FE+ +G P+G V D E RW Sbjct: 407 GKTTPLTEAHFEGFEKAFGTSPYGKER--------------VKDEGE---------VGRW 443 Query: 448 RKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALMREL 507 R+F RE I A+ D+LDI+WL++ D D L EP+ +AA +G L A E++ALM EL Sbjct: 444 REFRREEI-AARGDNLDIAWLREADDEAEDGLTEPEDIAAAILGHLQAATLEIEALMAEL 502 Query: 508 G 508 G Sbjct: 503 G 503 >UniRef50_D1C5W3 N-6 DNA methylase n=39 Tax=cellular organisms RepID=D1C5W3_SPHTD Length = 507 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 205/530 (38%), Positives = 274/530 (51%), Gaps = 58/530 (10%) Query: 4 NDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA----EYLPEGYRWDDL 59 +V +LW C+ LRD G+SY +YV +L LLFLKM E QE +PEGY W L Sbjct: 8 QQIVQRLWSYCNVLRDDGLSYGDYVEQLTYLLFLKMAHEQTQEPWNRPSPVPEGYDWPSL 67 Query: 60 KSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALV-SNMDSLDWYNG 118 +R G E YR +L LG ++ +FH I +P ++ L+ +D W Sbjct: 68 LARDGDELETHYRHLLEELGR-QPGMLGLIFHKAQNKIQDPAKLRRLIVDLIDREQWM-- 124 Query: 119 AHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGT 178 D G YEGLL+KNA + K GAGQYFTPRPLI+ I+ +++PQP E + DPA GT Sbjct: 125 --VLGTDAKGATYEGLLEKNARDVKGGAGQYFTPRPLIQAIVDVMRPQPGETICDPACGT 182 Query: 179 AGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI---E 235 GFL+ A + + LD + + A G+E+V RL MN LLH + Sbjct: 183 GGFLLAAHNSIVERYP---HLDPEQRKHLKLHALRGVEIVDSVTRLCAMNLLLHGVGPGP 239 Query: 236 GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAG---------------TNITRT 280 D +R G++L S +V TNPPFG + T + Sbjct: 240 AEADIEPPVRTGDSLNS--APSDHFDVVLTNPPFGRKSSVLVVNEEGQQEREALTVVRED 297 Query: 281 FVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRL 340 F TSNKQL F+QH+ L GRAAVVVPDNVLFEGG G IRR L+ +C +HT+LRL Sbjct: 298 FWATTSNKQLNFVQHVKSLLKIHGRAAVVVPDNVLFEGGAGETIRRKLLQECDVHTLLRL 357 Query: 341 PTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQP 400 PTGIFYAQGVK NVLFF + P +++ T +W+YDLRTN K P L Sbjct: 358 PTGIFYAQGVKANVLFFDRK----PPREQPWTSQLWIYDLRTNKHFTLKTKPLQRSDLDE 413 Query: 401 FERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKS 460 F + +P RT WS EEN + RWR FS + + Sbjct: 414 FVACF--NPENRHQRT-PTWS-----------EENPD-------GRWRAFSYDELIQRDK 452 Query: 461 DSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALMRELGAS 510 +LDI WLKDK D ++L +PD +AA+ + +L AL E + ++ +L + Sbjct: 453 VNLDIFWLKDKSLEDGENLGDPDEIAADIVEDLRAALEEFETILADLAPN 502 >UniRef50_A8YW15 Type I restriction modification system n=8 Tax=Bacteria RepID=A8YW15_LACH4 Length = 484 Score = 421 bits (1082), Expect = e-116, Method: Composition-based stats. Identities = 223/519 (42%), Positives = 319/519 (61%), Gaps = 43/519 (8%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLK 60 M N ++V KLW C+ LRD GVSYQ+Y+ EL +LFLKM KE +E + PE YRWD+L Sbjct: 1 MTNQEIVQKLWNECNVLRDDGVSYQDYITELTYILFLKMSKEQDEEKDI-PEKYRWDNLV 59 Query: 61 SRIGQEQLQFYRKMLVHLGEDD---KKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYN 117 ++ G E FYR++L+ LG + + + A++ N ST I EP + ++ +++ LDW++ Sbjct: 60 NKEGLELKNFYRQLLLDLGNPEVVKSERINAIYANASTAIDEPANLEKIIKDINDLDWWS 119 Query: 118 GAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAG 177 + GD+YEGL++KNANE KSGAGQYFTPR LI ++ + KP+ + DPAAG Sbjct: 120 ARE----EGLGDLYEGLMEKNANEVKSGAGQYFTPRVLINMMVKMTKPKIGDRCNDPAAG 175 Query: 178 TAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN 237 T GF++ AD+Y+K +T+D +L + DFQ+ AF G+ELVP T RLA+MN LH ++G Sbjct: 176 TFGFMVAADQYLKDKTDDYSELSEEKYDFQVKEAFSGMELVPNTHRLAIMNEYLHGMDGR 235 Query: 238 LDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNI--TRTFVHPTSNKQLCFMQH 295 L+ G + L ++G+ + +V TNPPFG+ G + TSNKQL F+Q Sbjct: 236 LEQGDS------LSANGKWMKNFDVVLTNPPFGTKKGGERVTRDDLTYETSNKQLNFLQI 289 Query: 296 IIETLHPGG--RAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTN 353 I +L G RAAVVVPDNVLF G G +IR+DL++KC+LHTILRLPTGIFYAQGV+TN Sbjct: 290 IYNSLKRDGKARAAVVVPDNVLFADGVGEEIRKDLLNKCNLHTILRLPTGIFYAQGVQTN 349 Query: 354 VLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLS 413 VLFFT+G +DK+ T + W+YD+R M SFGKR P D+ FE+++ D Sbjct: 350 VLFFTRG-----EEDKDNTKETWIYDMRHQMRSFGKRNPLNDKDFVEFEKLFCVDDR--- 401 Query: 414 PRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDS 473 ++ E D E+N N RWRKF+ + I+ + SLDISW+ D++ Sbjct: 402 ----------SKRKETWDKEKNPN-------GRWRKFTIDEIKKRPNTSLDISWMSDEEE 444 Query: 474 IDADSLPEPDVLAAEAMGELVQALSELDALMRELGASDE 512 + SL E E + +A++EL+ + + S++ Sbjct: 445 HETKSLKEILSDMNEKSKAISEAIAELNKALEGIDDSED 483 >UniRef50_A3XPV4 Type I restriction-modification system specificity subunit n=2 Tax=cellular organisms RepID=A3XPV4_9FLAO Length = 513 Score = 412 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 192/548 (35%), Positives = 277/548 (50%), Gaps = 69/548 (12%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQ--------------- 45 M ++ +++K+W L LRD GV Y +Y+ ++ LLFLKM E + Sbjct: 1 MTDSTIISKIWNLASVLRDDGVGYGDYLEQITYLLFLKMADELNKPPYNKGLKFPKLKDV 60 Query: 46 --EAEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQI 103 E W+ L + G E FY ++L L + K ++ +F I +P ++ Sbjct: 61 DGNEIQDGETCDWETLSGKRGAELESFYSQLLRSLSTE-KGMLGQIFTKSQNKIQDPAKL 119 Query: 104 TALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL 163 ++ +D DW + D G +YEGLLQKNA +TKSGAGQYFTPR LI+ I+ + Sbjct: 120 LKVIDMIDREDW----NMMGADIKGKIYEGLLQKNAEDTKSGAGQYFTPRSLIQAIVACV 175 Query: 164 KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRR 223 +PQP++ + DPA GT GF + A ++ LD + + F + F G E+V TRR Sbjct: 176 QPQPKKTIADPACGTGGFFLAAYDWIVEHHK----LDKEEKQFLKNNTFHGNEIVANTRR 231 Query: 224 LALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNIT----- 278 + +MN LH+I G +D I + L +D + + V NPPFG + IT Sbjct: 232 MCIMNMYLHNI-GEIDGEPFINPNDALIAD--DGKRFDYVLANPPFGKKSSMTITNEEGE 288 Query: 279 ----------RTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDL 328 + F +SNKQL F+QHI L G+AAVV+PDNVLFEGG G ++R+ L Sbjct: 289 QEKEDLSYNRQDFWETSSNKQLNFLQHIKTQLKINGKAAVVLPDNVLFEGGAGEEVRKQL 348 Query: 329 MDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFG 388 + LHTILRLPTGIFY GVK NVLFF P + T ++W YD RTN+ Sbjct: 349 LKTADLHTILRLPTGIFYRPGVKANVLFFKNK----PASKEAWTREIWFYDYRTNVHHTL 404 Query: 389 KRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWR 448 K+ P L+ F ++Y + ++ R E ++EE RWR Sbjct: 405 KKKPMLLSDLEEFIKLY--NSSNINNRKET---------WSKENEE----------GRWR 443 Query: 449 KFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALMRELG 508 K++ E I SLDI WLKDK D D+LP+PD+LA E + + L+ +M L Sbjct: 444 KYTYEDIIARDKTSLDIFWLKDKSLTDLDNLPDPDILAVEIIENIEAGLNSFKEIMETLN 503 Query: 509 ASDEADLQ 516 ++ + Sbjct: 504 EDVDSTPE 511 >UniRef50_A8ZTW6 N-6 DNA methylase n=5 Tax=cellular organisms RepID=A8ZTW6_DESOH Length = 481 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 183/519 (35%), Positives = 259/519 (49%), Gaps = 66/519 (12%) Query: 4 NDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQ-----EAEYLPE----GY 54 +D+ KLW C LR G+ Y +Y+ +L L+FLKM E G E E E Sbjct: 2 SDVANKLWGFCHTLRHDGIDYGDYIEQLTYLMFLKMAHEKGIDLSAVEYEDNQETVRLDC 61 Query: 55 RWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLD 114 W + G + L + +L L L+ +F T P + +++ +D Sbjct: 62 SWQPFVEKSGTDLLDAFANILRALSR-QPGLLGDIFTQAMPRFTNPVNLKKVINMIDETL 120 Query: 115 WYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPRE----V 170 W D G +EGLL+K+A E K GAGQYFTPR LI++I+ +++P PR+ Sbjct: 121 W----SEMPVDVKGAAFEGLLEKSAAEGKKGAGQYFTPRALIQSIVTVMRPDPRKQKDFT 176 Query: 171 VQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL 230 + DPA GTAGFL+ A ++ + + LD + + G ELVP RRLALMN Sbjct: 177 ICDPACGTAGFLMVAYEWLMAVSKGA--LDRKEVARIKKQTYFGQELVPRPRRLALMNLF 234 Query: 231 LHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSA--AGTNITRTFVHPTSNK 288 LH +E + G +I + + + TNPPFG+ + F TSNK Sbjct: 235 LHGLEPQIYLGDSIYEPD-------RGERYDCILTNPPFGTKGANQAPVRDDFTVSTSNK 287 Query: 289 QLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIF--Y 346 QL F+QH++ L PGGRAA+V+PDNVLF G I LM+ C++HT+LRLP G F Y Sbjct: 288 QLNFIQHVVTILKPGGRAAMVLPDNVLFADAAGEVI-GYLMEDCNVHTLLRLPNGTFSPY 346 Query: 347 AQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKR-TPFTDEHLQPFERVY 405 +QGVK NV+FF KG T+++W+YD RTN+P K+ P T FE+ Y Sbjct: 347 SQGVKANVIFFQKGVK---------TENIWIYDGRTNIPGVTKKERPLTPAMFDEFEKCY 397 Query: 406 GEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDI 465 G DP G S R + R++KF+R I+ +LDI Sbjct: 398 GPDPVGRSRRKDQG-----------------------DDGRFKKFTRSQIKDR-HYNLDI 433 Query: 466 SWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALM 504 +WL+D D +LPEP +LA EA+ EL + L ++ Sbjct: 434 AWLRDDSLEDPANLPEPHLLAGEAITELNACVDRLQEIL 472 >UniRef50_Q89Z59 Probable type I restriction enzyme BthVORF4518P M protein n=16 Tax=Bacteria RepID=T1M_BACTN Length = 472 Score = 393 bits (1010), Expect = e-108, Method: Composition-based stats. Identities = 176/515 (34%), Positives = 252/515 (48%), Gaps = 55/515 (10%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQ---EAEYLPEGYRWDD 58 L K+W L L G+ + +Y+ +L LLFLKM E + E +P GY+W D Sbjct: 7 TEQSLTKKVWNLATTLAGQGIGFTDYITQLTYLLFLKMDAENVEMFGEESAIPTGYQWAD 66 Query: 59 LKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNG 118 L + G + ++ Y + L L E D L+ ++ I +P + +++ +D W Sbjct: 67 LIAFDGLDLVKQYEETLKLLSELDN-LIGTIYTKAQNKIDKPVYLKKVITMIDEEQWL-- 123 Query: 119 AHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGT 178 D G +YE +L+KN + KSGAGQYFTPRPLI+ ++ + PQ E V DPA GT Sbjct: 124 --IMDGDVKGAIYESILEKNGQDKKSGAGQYFTPRPLIQAMVDCINPQMGETVCDPACGT 181 Query: 179 AGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNL 238 GFL+ A Y+K Q+ + +DF +A G++ P LA MN LH I + Sbjct: 182 GGFLLTAYDYMKGQSA-----SKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTD- 235 Query: 239 DHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNIT---RTFVHPTSNKQLCFMQH 295 I ++L + L ++ NPPFG+ ++ F T N QL F+QH Sbjct: 236 --RSPIVCEDSLEKEPSTL--VDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQH 291 Query: 296 IIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVL 355 ++ L GGRAAVV+PDNVLFE G G IR+ L+ +LHTILRLPTGIFYAQGVK NVL Sbjct: 292 MMLMLKTGGRAAVVLPDNVLFEAGAGETIRKRLLQDFNLHTILRLPTGIFYAQGVKANVL 351 Query: 356 FFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPR 415 FF+KG T ++W YD RT++ HL F Y Sbjct: 352 FFSKG---------QPTKEIWFYDYRTDIKHTLATNKLERHHLDDFVSCYN--------- 393 Query: 416 TEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSID 475 E+ D+E N RWRK+ + I SLDI+W+K +D Sbjct: 394 ---------NRVEIYDAENNPQ-------GRWRKYPVDEIIARDKTSLDITWIKPGGEVD 437 Query: 476 ADSLPEPDVLAAEAMGELVQALSELDALMRELGAS 510 SL E + + +A++EL+ L+ + + Sbjct: 438 DRSLAELMADIKDKSQTISRAVTELEKLLANIEEN 472 >UniRef50_Q7VG99 Type I restriction-modification system n=2 Tax=Bacteria RepID=Q7VG99_HELHP Length = 475 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 199/520 (38%), Positives = 266/520 (51%), Gaps = 65/520 (12%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEY--LPEGYRWDD 58 M+ +VAK+W LRD GVSY YV +L+ LLFLKM E E+ +P +W+ Sbjct: 1 MSEKAIVAKVWNFATILRDSGVSYTEYVAQLSYLLFLKMESERESIGEHSKIPTSCKWER 60 Query: 59 LKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNG 118 L + G E Y L L + + ++ V+++ I EP + L MDS W Sbjct: 61 LINLDGLELESAYNAALAQLAKSE-GVIGLVYNDAQNKIKEPANLKKLFVLMDSETWL-- 117 Query: 119 AHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGT 178 G + D G +YEGLL KNA ETK+GAGQYFTPR LI +I+ L++ +P V DPA GT Sbjct: 118 --GLNVDVKGAIYEGLLAKNATETKAGAGQYFTPRVLIDSIVGLMELKPNMEVCDPACGT 175 Query: 179 AGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNL 238 GFL+ A +K+QT D +++ + G ++ P L MN LH G Sbjct: 176 GGFLLSAYEAMKAQTKDKEEIK-----CLRNERLCGKDITPLVASLCAMNLYLH---GIG 227 Query: 239 DHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNI---------------TRTFVH 283 GG I +G++L G + V TNPPFG + T I F Sbjct: 228 GEGGIIEIGDSLSELGNR--RFDRVLTNPPFGKKSATKILAENGKVKSQKDEYNREDFFA 285 Query: 284 PTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTG 343 TSNKQL F+QHI+ L GG+AAVV+PDNVLFE G G +R+ L++ +LHTILRLPTG Sbjct: 286 TTSNKQLNFLQHIMNLLKIGGKAAVVLPDNVLFEAGAGEKVRKKLLEDFNLHTILRLPTG 345 Query: 344 IFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFER 403 IFYAQGVK NVLFF K + + T VWVYD+RTNM +P + EHL+ FE Sbjct: 346 IFYAQGVKANVLFFDKVATSE-----DSTQKVWVYDMRTNMNLSLVTSPLSAEHLREFES 400 Query: 404 VYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSL 463 + + R E E R+R FS I+ +L Sbjct: 401 CFCVG--AMENRKESE--------------------------RFRSFSIGEIKKRDKMNL 432 Query: 464 DISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDAL 503 DI WLKD+ D ++LP P L+ + L AL E++ L Sbjct: 433 DIFWLKDESLEDLENLPSPKDLSEQICISLKNALREIEQL 472 >UniRef50_D2TNZ8 Putative type I restriction modification system HsdM component n=1 Tax=Citrobacter rodentium ICC168 RepID=D2TNZ8_CITRO Length = 500 Score = 380 bits (977), Expect = e-104, Method: Composition-based stats. Identities = 175/524 (33%), Positives = 253/524 (48%), Gaps = 48/524 (9%) Query: 4 NDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYR--WDDLKS 61 D+V ++W + LRD G+S +YV +L L+FLKM E + WD+L Sbjct: 7 TDIVNRVWGYANILRDDGISNGDYVEQLTFLIFLKMNAERVSLGKLKGNIVSDAWDELLK 66 Query: 62 RIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHG 121 G+ L Y K++ LGE + L++ +F+ I + ++ L+ ++ W + Sbjct: 67 LSGESLLTKYSKIISQLGESE-GLLETIFYGAQNKIQDAGKLKKLILMINEEVWLSS--- 122 Query: 122 KSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGF 181 + D G +YEG+LQK+A+ K GAGQYFTPR LI+ I+ + P+P + + DPA GT GF Sbjct: 123 -NFDVKGAIYEGILQKSADTEKKGAGQYFTPRALIEAIVEAVDPEPMQTIADPACGTGGF 181 Query: 182 LIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHG 241 L A Y+ N +D + D F + F G E+ RL MN LH+I + Sbjct: 182 LTVAHDYI---FNKIDKNEVDKHSFLRNSTFSGNEISSSVARLCAMNLYLHEIG---IYS 235 Query: 242 GAIRLGNTLGSDGENLPKAHIVATNPPFGSA------------AGTNITRTFVHPTSNKQ 289 I + + L S + K IV NPPFG I F T+NKQ Sbjct: 236 NPISVSDALES--KPSKKVDIVLANPPFGRKSTFTINIDKSKIDNKYIRDDFWVETTNKQ 293 Query: 290 LCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQG 349 L F+QHI L G+AAVV PDN+LF+ G G IRR L+D+ +LHT+LRLPTGIFYAQG Sbjct: 294 LNFLQHICNMLKKDGKAAVVFPDNILFDSGAGEKIRRKLLDEYNLHTVLRLPTGIFYAQG 353 Query: 350 VKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDP 409 VK NVLFF ++ + T+ VW YDLRT++ K F +Y ++ Sbjct: 354 VKANVLFFDNCI----DKKRPRTEKVWFYDLRTSIHKTFKHNKLIRSDFNEFIALYKKE- 408 Query: 410 HGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLK 469 + WS + T RWR FS E I +LDI WLK Sbjct: 409 --NIESRKSTWSTDV-------------TKYSTPNGRWRAFSYEEILLRDKANLDIQWLK 453 Query: 470 DKDSIDADSLPEPDVLAAEAMGELVQALSELDALMRELGASDEA 513 + ++++ VL + L AL + + L ++ + Sbjct: 454 EDVFNQSENIESSPVLVDSIIELLSSALDDFREV-EALLSNSQK 496 >UniRef50_UPI000190A448 hypothetical protein Salmonelentericaenterica_35384 n=2 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI000190A448 Length = 306 Score = 378 bits (970), Expect = e-103, Method: Composition-based stats. Identities = 264/293 (90%), Positives = 270/293 (92%), Gaps = 1/293 (0%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLK 60 MNNNDLVAKLWKLCDNLRDGGVSYQNY NELASLLFLKMCKETGQEA+YLPEGYRWDDLK Sbjct: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYANELASLLFLKMCKETGQEADYLPEGYRWDDLK 60 Query: 61 SRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAH 120 SRI QEQLQFYRKMLVHLGED KKLVQAVFHNV TTITEPKQIT LVSNMDSLDWY+G Sbjct: 61 SRIDQEQLQFYRKMLVHLGEDKKKLVQAVFHNVCTTITEPKQITELVSNMDSLDWYSGTR 120 Query: 121 GKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAG 180 GKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAG Sbjct: 121 GKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAG 180 Query: 181 FLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDH 240 FLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDH Sbjct: 181 FLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDH 240 Query: 241 GGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNI-TRTFVHPTSNKQLCF 292 GGAIRLGNTLGSDGENLP+A IVATNPPFGSAA + + P +N Sbjct: 241 GGAIRLGNTLGSDGENLPQADIVATNPPFGSAAAPTLPAPSCTRPATNSFALC 293 >UniRef50_D0LNE1 Type I restriction-modification system, M subunit n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LNE1_HALO1 Length = 633 Score = 373 bits (958), Expect = e-102, Method: Composition-based stats. Identities = 119/514 (23%), Positives = 197/514 (38%), Gaps = 69/514 (13%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA------------- 47 + L LW D LR G + +Y N + LLFLK + +E Sbjct: 138 LTTAQLERYLWAAADILR-GQIDSSDYKNYIFGLLFLKRLSDVFEEEAEKLTAEGLPAAV 196 Query: 48 ---------EYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKL---VQAVFHNVST 95 ++PE RW ++ +++ + L E + L ++ + N Sbjct: 197 AWNDPDEHQFFVPERARWSEI-AKVATGIGEALNVACAALEEANSGLDGVLEGIDFNDER 255 Query: 96 TITEPKQ----ITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFT 151 + K + LV + L N A D G YE L++K A++ G+++T Sbjct: 256 RLGNTKNRDAVLARLVQHFGQLSLKN-ADLSEPDMLGRAYEYLIEKFADDAGKKGGEFYT 314 Query: 152 PRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRA 211 PR +++ I+ LL P + DP G+ G LIE YV+ Q + +L Sbjct: 315 PRKVVQLIVELLAPTAGMRISDPTCGSGGMLIECAHYVERQGGNPRNL-----------T 363 Query: 212 FIGLELVPGTRRLALMNCLLHDIE-GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFG 270 G E GT + MN LLH + ++ G IR L D L V NPPF Sbjct: 364 LHGQEKNLGTWAICKMNMLLHGLPSARIEKGDTIRDPRLL--DNGALLVYDRVIANPPFS 421 Query: 271 ---------SAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKG 321 G R + P + L F+QH++ TL+ GGR VV+P VLF G Sbjct: 422 LDEWGVEVAEGDGHGRFRFGLPPKTKGDLAFLQHMVATLNEGGRLGVVMPHGVLFRGSSE 481 Query: 322 TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLR 381 IR L+ + ++ L +FY G+ VL ++ ++ + V D Sbjct: 482 GRIRSKLLAEDLFEAVIGLAPNLFYGTGIPAAVLVLSR------DKARARKGKVLFVDAS 535 Query: 382 TNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQH 441 + + + D H+ R + E R ++ E+ +E N N ++ Sbjct: 536 SEFEAGSAQNYLRDVHVTKIARAFHE------YRDVERFARVVPLAEIEQNEGNLNISRY 589 Query: 442 LATSRWRKFSREWIRTAKSDSLDISWLKDKDSID 475 + TS+ + A+ L+ + +D+ Sbjct: 590 VDTSQEEERIDVAAAVARLRELEAA--RDEAEAT 621 >UniRef50_B5H9V2 N-6 DNA methylase n=1 Tax=Streptomyces pristinaespiralis ATCC 25486 RepID=B5H9V2_STRPR Length = 519 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 189/552 (34%), Positives = 265/552 (48%), Gaps = 77/552 (13%) Query: 8 AKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLP--------------EG 53 +LW C+ LRD GVS NY+ +L+ L+FLKM ET Q + P +G Sbjct: 2 DRLWNYCNVLRDDGVSASNYLEQLSLLVFLKMADETEQLNAHRPSADHEHMLPTAPEWQG 61 Query: 54 YRWDDLKSRIGQEQLQFYRKMLVHLG----EDDKKLVQAVFHNVSTTITEPKQITALV-S 108 W +L G + Y K+L+ LG ++D + +F+ I P + L+ Sbjct: 62 RGWPELIDLEGDPLEEAYSKLLIDLGRRTDQNDHTTLSLIFNRARNHIENPTHLRRLIVD 121 Query: 109 NMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPR 168 +D W N D G YE L+ ++A++TK+GAGQYFTPR LI++I+ ++P P Sbjct: 122 LIDKEKWRNSRS----DINGAAYEALIARSASDTKAGAGQYFTPRALIESIVRCMRPTPY 177 Query: 169 EVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMN 228 + + DPA GT GFLI A Y+ + D DL + + G E+VP T RLA MN Sbjct: 178 DTITDPACGTGGFLIAAYEYITREYGD--DLPDEDLHRLRTESIWGHEIVPATARLAAMN 235 Query: 229 CLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRT-------- 280 CLLH + G+ I +G+ L E A +V NPPFG +G N++ Sbjct: 236 CLLHSL-GDPTGEPIIDVGDALAKPPER--HASLVLANPPFGRKSGINVSGKEAEAEADD 292 Query: 281 -------------FVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTD---I 324 T+NKQL F+QHI L GRAAV+VPD VL+EGG G+ + Sbjct: 293 RDNVTYNRPDFWVGEQTTTNKQLNFLQHIGTQLTDKGRAAVIVPDGVLYEGGAGSVGDLV 352 Query: 325 RRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNM 384 RR+L+ +LHT+LRLP IFYA GVK +VLFF + D T VW YDLRT+ Sbjct: 353 RRELLTGYNLHTMLRLPENIFYAGGVKAHVLFFEAVPGHRADDDPPHTTYVWTYDLRTDS 412 Query: 385 PSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLAT 444 K+ P EHL FE+ A + D + K +D Sbjct: 413 RFTLKKNPMKPEHLADFEK-------------------QAFDPSDPDRKHRKESD----- 448 Query: 445 SRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALM 504 R+R+ + + K +LDI+ L + S + D L G+L ALSE++A Sbjct: 449 -RFRRHAAAELLAQKQVNLDIARLSPEASAAKEPTASIDALTRYVAGDLRSALSEIEAFA 507 Query: 505 RELGASDEADLQ 516 RELG A + Sbjct: 508 RELGVDLTAVSE 519 >UniRef50_A1WBU7 N-6 DNA methylase n=19 Tax=Bacteria RepID=A1WBU7_ACISJ Length = 500 Score = 364 bits (935), Expect = 3e-99, Method: Composition-based stats. Identities = 119/541 (21%), Positives = 203/541 (37%), Gaps = 88/541 (16%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLK------------MCKETGQEA- 47 + + L + LW+ + LR G V ++ + LLF K + ETG E Sbjct: 8 ITLSQLESHLWESANILR-GPVDAADFKTYIFPLLFFKRICDVWDEEYQEIVDETGDEQL 66 Query: 48 --------EYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITE 99 +PE W+D++++ ++ + + + + + VF + + + Sbjct: 67 AWFPESHRFQIPEDCHWNDVRTK-ASNVGTALQRAMREIEKANPDTLYGVFGDAQWSNKD 125 Query: 100 P---KQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLI 156 + L+ + L + N + D GD YE L++K A+ T AG+++TPR ++ Sbjct: 126 RLSDALLKDLIEHFSKLPFGN--KNVNSDLLGDAYEYLIKKFADATNKKAGEFYTPRSVV 183 Query: 157 KTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLE 216 + +I +L P+ E + DPA GT G L+ A ++VK Q D+ L G G E Sbjct: 184 RLMIDMLDPKEAETIYDPACGTGGMLLAAVQHVKEQHGDVKRLWGK---------LYGQE 234 Query: 217 LVPGTRRLALMNCLLHDIE-GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFG-SAAG 274 T +A MN LH IE + G +R D L V NPPF G Sbjct: 235 KNLTTSSIARMNLFLHGIEDFQVVRGDTLRNPAFFEVD--RLATFDCVIANPPFSLEKWG 292 Query: 275 TNIT------RTF--VHPTSNKQLCFMQHIIETLHP-GGRAAVVVPDNVLFEGGKGTDIR 325 ++ R F + P+S+ ++QH+++++ GR AVV+P LF G IR Sbjct: 293 EDLWLNDPFGRNFAGLPPSSSGDFAWVQHMVKSMADVSGRMAVVLPQGALFRKGVEGSIR 352 Query: 326 RDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMP 385 + L++ + ++ L +FY G+ +L K + + D Sbjct: 353 QKLLEMDLVEAVIGLAPNLFYGTGLAACILVLRKRKPVKHKKKV------LIADASRLFR 406 Query: 386 SFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATS 445 + EH Y + V +E K D L S Sbjct: 407 RGRAQNYLEPEHAAEILGWYRGFAD------------VQDTVRVVSLDEIKAEDWTLNIS 454 Query: 446 RWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALMR 505 R+ + D LP+ +A+ +A L +M Sbjct: 455 RY--------------------VLPPLQEDIPPLPDAIAAFKDALTRCREAEERLAQVMT 494 Query: 506 E 506 E Sbjct: 495 E 495 >UniRef50_Q2J5S8 N-6 DNA methylase n=5 Tax=Bacteria RepID=Q2J5S8_FRASC Length = 816 Score = 359 bits (921), Expect = 2e-97, Method: Composition-based stats. Identities = 108/493 (21%), Positives = 184/493 (37%), Gaps = 77/493 (15%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAE------------ 48 + L L+ D LR G + + + +LFLK + + AE Sbjct: 51 LTLPQLERHLYAAADILR-GKMDASEFKEYIFGMLFLKRASDEFEVAEKRIIAQLIADGR 109 Query: 49 -------------------YLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAV 89 Y+PE RW L+ +I K L L + ++ V Sbjct: 110 SRTDAERQATLRARYGDTLYVPEKARWAWLRDQIHHNVGDALNKALELLEHHNSTALEGV 169 Query: 90 FHNVSTTIT------EPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETK 143 ++ T T +++ L+++ +++ N + D G YE L+ + A+ Sbjct: 170 VQHIDFTRTVGQSSIPDRKLRDLIAHFNTVRLRNE-DFEFPDLLGAAYEYLIGEFADSAG 228 Query: 144 SGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDT 203 G+++TPR +++ ++ L+ P+P V DP +G+ G LI A +V D +L Sbjct: 229 KKGGEFYTPRAVVRMMVALVDPKPGMEVYDPCSGSGGMLILARDWVAEHGGDPRNL---- 284 Query: 204 QDFQIHRAFIGLELVPGTRRLALMNCLLHDI-EGNLDHGGAIRLGNTLGSDGENLPKAHI 262 +G E G ++ MN LLH I + ++ +G + + S L + Sbjct: 285 -------RLVGQEYNGGVWSISKMNLLLHGIPDADIRNGDTLAEPMHVSS--GELERFDR 335 Query: 263 VATNPPFGS---AAGTNITRTF-----VHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNV 314 V +NPPF G + F L F+QH++ L G AA V+P V Sbjct: 336 VLSNPPFSQNYSREGMDRENRFRWGWAPEGGKKADLMFVQHMVAVLRANGVAATVMPHGV 395 Query: 315 LFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDD 374 LF GG DIR L+D + ++ L +FY G+ VL A ++ Sbjct: 396 LFRGGTERDIRTALLDDDVIEAVIGLAPNLFYGTGIPACVLVLR----APGSKPAERAGK 451 Query: 375 VWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEE 434 V + + + EH++ Y S +V EE Sbjct: 452 VLFVNADAEFRAGRAQNYLMPEHVEKIVAAYHGFTDIPS------------YAKVVTREE 499 Query: 435 NKNTDQHLATSRW 447 + D +L R+ Sbjct: 500 LRAADDNLNIRRY 512 >UniRef50_A5VVC4 Type I restriction-modification system, M subunit n=34 Tax=Brucella RepID=A5VVC4_BRUO2 Length = 523 Score = 356 bits (913), Expect = 2e-96, Method: Composition-based stats. Identities = 110/522 (21%), Positives = 192/522 (36%), Gaps = 68/522 (13%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA------------- 47 + +L LWK D LR G + +Y + LFLK + +E Sbjct: 19 LTRTELENHLWKSADILR-GSIDSSDYKIYIFGFLFLKRLSDRFEEEAKESIRQGLPENV 77 Query: 48 ---------EYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDK---KLVQAVFHNVST 95 +L E RW +K K + + + ++ + N + Sbjct: 78 AYSDPDEHEFFLVERARWSSIKKLT-TGIGDHLNKACAAIEDANPSIEGVLANIDFNSES 136 Query: 96 TITEPKQ----ITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFT 151 + + K ++ L+ + +D N A D G YE L+ K A++ G+++T Sbjct: 137 RLGDAKNREGVLSRLIDHFSRIDLSN-ASLSEPDMLGRAYEYLIDKFADDAGKKGGEFYT 195 Query: 152 PRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRA 211 P+ +++ I+ LL P+P + DP G+ G L++ +V L+G ++ Sbjct: 196 PQHVVRLIVELLAPKPGMRISDPTCGSGGMLVQVAEHVA-------KLEGKRLGEALNIT 248 Query: 212 FIGLELVPGTRRLALMNCLLHDI-EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFG 270 G E GT +A MN LLH + + ++ G IR L DG NL V NPPF Sbjct: 249 LHGQEKNLGTWAIAKMNLLLHGLRDARIEKGDTIRNPRLLDQDG-NLFLYDRVIANPPFS 307 Query: 271 -------------SAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFE 317 G N + P + L F+QH++ TL+ G VV+P VLF Sbjct: 308 LDSWGAEDVSGDTEKKGHNRFIYGIPPKNMGDLAFVQHMVATLNTKGVCGVVMPHGVLFR 367 Query: 318 GGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWV 377 G IR ++ I+ LP +F G+ VL K V Sbjct: 368 GSGDGRIRESMLKADLFEAIIGLPENLFAGTGIPATVLILNKAKATERK------GRVLF 421 Query: 378 YDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKN 437 K+ + ++ + E + + E+ +++ N N Sbjct: 422 IHGAKEFEERPKKNILGEGNITRIVNAFNAWKD------EDRFCRIVDMKEIEENDFNLN 475 Query: 438 TDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSL 479 +++ T K ++ + D +D+ + ++L Sbjct: 476 ISRYIDTLEPEKPI--DVQAELAKLWDAETARDEAAARMNAL 515 >UniRef50_A1T135 N-6 DNA methylase n=22 Tax=Actinomycetales RepID=A1T135_MYCVP Length = 544 Score = 352 bits (902), Expect = 3e-95, Method: Composition-based stats. Identities = 111/545 (20%), Positives = 196/545 (35%), Gaps = 72/545 (13%) Query: 4 NDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEY-------------- 49 +L LWK D LR G +S Y + + L+FLK + E Sbjct: 19 KELKDTLWKAADKLR-GSLSASQYKDVILGLVFLKYVSDAYDERREAIRTELEADGLDAE 77 Query: 50 -------------------LPEGYRWDDLKSRIG----------QEQLQFYRKMLVHLGE 80 +P G RW L + Q + + + + Sbjct: 78 QIEDLIEDPEEYQGYGVFVVPPGARWKFLAENAKGLPAAGGEPAKNIGQLIDEAMDAVMK 137 Query: 81 DDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNAN 140 + L + + + +++ L+ +S + G++RD G++YE L A Sbjct: 138 ANPTLQGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGDGRARDLMGEVYEYFLGNFAR 197 Query: 141 ETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLD 200 G++FTP ++K I+ +L+P V DP G+ G ++ ++++ D ++ Sbjct: 198 AEGKRGGEFFTPPSVVKVIVEVLEPSRG-RVYDPCCGSGGMFVQTEKFIYEHDGDPKEI- 255 Query: 201 GDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKA 260 A G E + T R+A MN +H I+ + G R G+T D + Sbjct: 256 ----------AVYGQESIEETWRMAKMNLAIHGID---NKGLGARWGDTFARDQHPDVQM 302 Query: 261 HIVATNPPFGSAAG-----TNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVL 315 V NPPF R V P +N ++QHI+ L GG+A VV+ + + Sbjct: 303 DYVLANPPFNIKDWARNEEDARWRFGVPPANNANYAWIQHILYKLASGGKAGVVMANGSM 362 Query: 316 FEGGKGT-DIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDD 374 G DIR +++ + ++ LPT +F + G+ V FF K A + + Sbjct: 363 SSNSNGEGDIRAQIVEADLVSCMIALPTQLFRSTGIPVCVWFFAKDKTAGKQGSVDRSGQ 422 Query: 375 VWVYDLRTNMPSFGK-RTPFTDEHLQPFERVYGEDPHGLSPRTEG-EWSFNAEETEVADS 432 V D R + +D+ + + S +G + + A Sbjct: 423 VLFIDAREMGYMVDRAERALSDDDIVKIGDTFHAWRGSASAAAKGVVYQDVPGFCKSATL 482 Query: 433 EENKNTDQHLATSRWRKFSREWIRTAKSDSLD--ISWLKDKDSIDADSLPEPDVLAAEAM 490 E K D L R+ + +D I+ LK + D + + E + Sbjct: 483 AEIKAADYALTPGRY---VGAAAVEDDGEPIDEKIARLKTELLAAFDESARLEKVVREQL 539 Query: 491 GELVQ 495 + Sbjct: 540 ERIDA 544 >UniRef50_B6ENI7 N-6 adenine-specific DNA methylase n=19 Tax=root RepID=B6ENI7_ALISL Length = 587 Score = 351 bits (901), Expect = 3e-95, Method: Composition-based stats. Identities = 100/489 (20%), Positives = 190/489 (38%), Gaps = 68/489 (13%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA------------- 47 ++ L + LW+ D LR G + + + + ++FLK + +E+ Sbjct: 5 LSLQQLESFLWETADILR-GNMDASEFKDYIFGMMFLKRLSDAFEESQEKVIQYYLDKGK 63 Query: 48 ------------------EYLPEGYRWD---DLKSRIGQEQLQFYRKMLVHLGEDDKKLV 86 ++PE RW DLK IG EQL + + + ++ Sbjct: 64 TQAQAEELANDEDEYDSTFFIPENARWSVLKDLKHNIG-EQLNKATESIEEFNSALEGVL 122 Query: 87 QAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGA 146 + N+ +++ K++ L+S+ + N D G YE L++ A+ Sbjct: 123 VTIDFNIKNKLSD-KKLQDLLSHFNKYRLRNE-DFDRPDLLGTAYEYLIKMFADSAGKKG 180 Query: 147 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDF 206 G+++TP +++ ++ LLKP + DP +G+ G L++ ++ Q + +L Sbjct: 181 GEFYTPSEVVQLLVELLKPHAGMRIYDPTSGSGGMLVQTRNQLEKQGENAANL------- 233 Query: 207 QIHRAFIGLELVPGTRRLALMNCLLHDI-EGNLDHGGAIRLGNTLGSDGENLPKAHIVAT 265 + G E+ T + MN LH + ++ G +R + ++G L V Sbjct: 234 ----SLYGQEMNLNTWAICKMNMFLHGVQNADIRKGDTLR--DPQHTEGGELMSFDRVIA 287 Query: 266 NPPFGSA---------AGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLF 316 NPPF G P L F+QH+I + + G VV+P VLF Sbjct: 288 NPPFSLKKWGKDECDNDGFGRFPYGTPPKDAGDLAFVQHMIASTNSEGMVGVVMPHGVLF 347 Query: 317 EGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVW 376 G IR+ +++ L ++ LP+G+FY G+ +L K + V Sbjct: 348 RGSSEKAIRQGILEDDLLEAVVGLPSGLFYGTGIPACLLIINKNKPSARK------GKVL 401 Query: 377 VYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENK 436 + + E + + E+ S ++ +E+A+++ N Sbjct: 402 FINGELEFAEGKNQNKLRPEDIAKIVTTF-ENHSFESQCDIKRYARVVPLSEIAENDFNL 460 Query: 437 NTDQHLATS 445 N ++ TS Sbjct: 461 NIRRYADTS 469 >UniRef50_A4AK44 Type I restriction-modification system methylation subunit n=2 Tax=Actinobacteria (class) RepID=A4AK44_9ACTN Length = 507 Score = 351 bits (900), Expect = 5e-95, Method: Composition-based stats. Identities = 121/543 (22%), Positives = 203/543 (37%), Gaps = 84/543 (15%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQ--------------- 45 + L + LW + LR G V ++ + + ++F K ++ Sbjct: 11 LTQRQLESALWSAANALR-GPVDAGDFKSFVFPVMFFKWISDSWDFQHRQAVSDFGDALT 69 Query: 46 ---EAEYLP----EGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTIT 98 EA+Y P + W+D+ K L+ + E + + VF +V+ + T Sbjct: 70 PEIEADYHPFLIPDECHWNDVYDVTVNTG-SKLGKTLLRIQEANPGKLDGVFGDVNWSNT 128 Query: 99 EPKQITALVSNMDSLD-WYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIK 157 + +AL +D+ D + S D G YE LL++ A + AG++FTPR ++ Sbjct: 129 DRLPESALTKLLDAFDKLTLDPNNASGDMLGAGYEYLLREFAEASGKKAGEFFTPRHVVH 188 Query: 158 TIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLEL 217 ++ LL+PQ + V DPA G+AG L+E V + D L G E Sbjct: 189 LLVKLLQPQSGDSVCDPACGSAGMLVETVNAVDASGGDSRTL-----------TLYGQEF 237 Query: 218 VPGTRRLALMNCLLHDIEG-NLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFG------ 270 T +A MN LH E + G R L G L K +V NPPF Sbjct: 238 NLTTAAMARMNLYLHGQESFQIMRGDTFREPKLLDEAG-QLRKFDVVIANPPFSLRNWGA 296 Query: 271 SAAGTNITRT----FVHPTSNKQLCFMQHIIETLHPG-GRAAVVVPDNVLFEGGKGTDIR 325 + + V P +N ++QH++ T+ GRA +++P LF GGK IR Sbjct: 297 DMWARDPYKRAIGGEVPPPANGDWAWIQHMVSTIKDDTGRAGIIMPHGALFRGGKEAAIR 356 Query: 326 RDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMP 385 + L ++ LPT +FY+ ++ +L F K +A + V D ++ Sbjct: 357 EHFVRTGLLEAVIGLPTNLFYSTSIQVCILIFRKNKLAE------RVNKVMFIDAKSLSV 410 Query: 386 SFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATS 445 + + +++ + Y + D E + L Sbjct: 411 PGTNQNTMSVANIEAIDSAYKTGRDIDGDGGLS--------VRMVDLSEIETNSFDLNIG 462 Query: 446 RWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALMR 505 R+ K + ++ E L EA G L A + LD ++ Sbjct: 463 RYLK---------------------GMAAAEANVDEALALMREAQGRLSTAQTTLDEKLK 501 Query: 506 ELG 508 G Sbjct: 502 AAG 504 >UniRef50_D0MHM2 N-6 DNA methylase n=3 Tax=Bacteria RepID=D0MHM2_RHOM4 Length = 527 Score = 345 bits (886), Expect = 2e-93, Method: Composition-based stats. Identities = 100/502 (19%), Positives = 186/502 (37%), Gaps = 79/502 (15%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA------------- 47 ++ + L LW +R G V + + + L+FLK + ++ Sbjct: 3 LDISTLETWLWDAACAIR-GPVDAPKFKDYILPLVFLKRLSDVFEDEMDRLAEEYGSREV 61 Query: 48 ----------------------EYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKL 85 Y+PE RW +++R QF + + ++ +L Sbjct: 62 AQHIVEEEREQGIIARGGGSVRFYIPENARWKAIRTRGQVGLGQFLTDAVRAVARENPRL 121 Query: 86 ---VQAVFHNVS---TTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNA 139 + V N + I + + LV + G D G YE LL+K A Sbjct: 122 QGVIDIVDFNATAAGQRIVADEYLARLVDVLSRHRL--GLRDVEPDILGRAYEYLLRKFA 179 Query: 140 NETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDL 199 AG+++TPR + + +L+PQP V DP G+ G LI+ + + + Sbjct: 180 EGQGQSAGEFYTPREVAVLMARILEPQPGMTVYDPCCGSGGLLIKCHLRLLETHGEEQNG 239 Query: 200 DGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPK 259 G E+ P T +A MN ++HD+E ++ G +R G L Sbjct: 240 HRRLPAHHAPLQLFGQEINPATFAMARMNAVIHDMEADIRLGDTMRHPAFRDETG-RLMA 298 Query: 260 AHIVATNPPFGSAAGTNITRT--------FVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 311 +V NP + T++ + P S+ ++QH++ +L+ GR AVV+ Sbjct: 299 FDLVTANPMWNQNFPTDLYENDPYERFHLGIPPASSADWGWLQHMLASLNDTGRMAVVLD 358 Query: 312 DNVLFEG------GKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANP 365 + G + DIR+ +++ + ++ LP +FY ++ + Sbjct: 359 TGAVSRGSGNQGASRERDIRKAFVERDLIEAVILLPENLFYNTTAPGIIIVINRK----- 413 Query: 366 NQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAE 425 K ++ + + + TDEH++ R+Y EW Sbjct: 414 ---KRHPGEILLINASKLFAKGRPKNYLTDEHIETIARLYH------------EWQAEEG 458 Query: 426 ETEVADSEENKNTDQHLATSRW 447 + + +EE D +L+ SR+ Sbjct: 459 LSAIITNEEAARNDYNLSPSRY 480 >UniRef50_C0QCH3 HsdM2 n=5 Tax=Bacteria RepID=C0QCH3_DESAH Length = 515 Score = 345 bits (885), Expect = 2e-93, Method: Composition-based stats. Identities = 108/506 (21%), Positives = 193/506 (38%), Gaps = 86/506 (16%) Query: 5 DLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA----------------- 47 L LW D LR G + ++ N + LLFLK + E Sbjct: 7 SLETWLWGSADILR-GSIDSSDFKNYIFGLLFLKRANDVFDEENEKLVEKENWDIEAAAS 65 Query: 48 ------EYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITE-- 99 ++P+ RW + + + Q + L + E++ L + V V + Sbjct: 66 DPDYHKFFIPDTARWQTIIEKT-ENIGQAIDEALAAIEEENLNL-EGVMTAVHFGNKDVL 123 Query: 100 -PKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKT 158 + L+++ + N + D GD YE L++ A++ G+++TP+ +++ Sbjct: 124 SDALLQRLLNHFNKYSLKNK-DLYTPDLLGDAYEYLIKMFADDAGKKGGEFYTPKGVVRL 182 Query: 159 IIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELV 218 I+ L+KP+P+ V DP G+ G L+E+ RY+ Q + +L + + G E Sbjct: 183 IVQLIKPEPKNSVYDPTCGSGGMLVESARYIAEQGGKVGEL--------LDASLFGQEKN 234 Query: 219 PGTRRLALMNCLLHDI-EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNI 277 GT + +N +LH+ + ++ G + SDGE L V NPPF + Sbjct: 235 LGTWAICKINMILHNYSDADIKKGCTLSTPKHSTSDGE-LMIFDRVIANPPFSQNKWWDA 293 Query: 278 TR----------------------------TFVHPTSNKQLCFMQHIIETLHPGGRAAVV 309 V P L F+QH+I L+ G+ +V Sbjct: 294 AEVDVKVNGNGKEMAVNYSKAVSDPYGRFQYGVPPRGYADLAFLQHMISVLNQNGKLGIV 353 Query: 310 VPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDK 369 +P VLF GG IR+ ++ L ++ LP+ +FY G+ ++L K + Sbjct: 354 LPHGVLFRGGSEGKIRKGILKDDILEAVVGLPSKLFYNTGIPASILIVNKSKPIHLK--- 410 Query: 370 NCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEV 429 + V D + + +EH++ Y + + Sbjct: 411 ---NKVIFIDASQDYKEGKNQNRLEEEHVKKVVEAYDAGQEID------------KFMRI 455 Query: 430 ADSEENKNTDQHLATSRWRKFSREWI 455 D +E K D +L +R+ S E + Sbjct: 456 VDMKEIKENDYNLNITRYIDTSEEEV 481 >UniRef50_Q1MKB0 Putative type I restriction enzyme modification methylase subunit n=1 Tax=Rhizobium leguminosarum bv. viciae 3841 RepID=Q1MKB0_RHIL3 Length = 411 Score = 343 bits (879), Expect = 1e-92, Method: Composition-based stats. Identities = 193/402 (48%), Positives = 245/402 (60%), Gaps = 42/402 (10%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLK 60 MN N +V KLW+LC LR G++YQ YV EL LLFLKM E +E LP RW DL Sbjct: 1 MNANAIVQKLWRLCTVLRKDGITYQQYVTELTYLLFLKMMAERNRETGSLPRSMRWADLV 60 Query: 61 SRIGQEQLQFYRKMLVHLG-------------------------------EDDKKLVQAV 89 G +L+ YRK LV LG ++VQ + Sbjct: 61 QANGLAKLELYRKTLVTLGTVSTRLGKDDALVLPPGENATPDERKRYADARPLPEMVQEI 120 Query: 90 FHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQY 149 F N ST I EP+ +T LV+ +D LDW++ + RD FGD+YEGLLQKNA ETK GAGQY Sbjct: 121 FDNASTFIREPQNLTTLVTAIDELDWFS----EDRDQFGDLYEGLLQKNAEETKRGAGQY 176 Query: 150 FTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIH 209 FTPR LI+ ++ L++P+P EV+QDPAAGT GFLI ADRY+++ T++ DL Q+FQ Sbjct: 177 FTPRVLIELLVRLMQPKPGEVIQDPAAGTGGFLIAADRYMRAVTDNYFDLGRKQQEFQKR 236 Query: 210 RAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPF 269 AF G+E VPGT RL LMN LH+I+ + LG+TL G+ L +A+++ TNPPF Sbjct: 237 HAFHGMENVPGTLRLLLMNLYLHNIDS-----DHVDLGDTLSDKGKGLGRANLILTNPPF 291 Query: 270 GSAAGTNITRTF--VHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRD 327 G A G S+ QL F++H I L PGGRAA+VVPDNVLFE G+G +R+ Sbjct: 292 GPAGGAPTRDDLSVTATVSSYQLPFVEHCIRALQPGGRAAIVVPDNVLFEDGRGRQLRQM 351 Query: 328 LMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDK 369 +MD C +HTILRLPTGIFYAQGVKTNV+F T+ Q Sbjct: 352 MMDWCDVHTILRLPTGIFYAQGVKTNVIFLTRAKTETGTQRP 393 >UniRef50_A4XPR7 Type I restriction-modification system, M subunit n=6 Tax=Proteobacteria RepID=A4XPR7_PSEMY Length = 908 Score = 342 bits (878), Expect = 2e-92, Method: Composition-based stats. Identities = 112/581 (19%), Positives = 198/581 (34%), Gaps = 91/581 (15%) Query: 6 LVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQ-------------------- 45 L L CD+LR G + Y + +LFLK + Sbjct: 11 LENLLLTACDDLR-GNMDASEYKEYIFGMLFLKRASDLFDQRRDEIRKEGKAAGLSDDDI 69 Query: 46 ------------EAEYLPEGYRWDD-----------LKSRIGQEQLQFYRKMLVHLGEDD 82 + ++PE RW+D + + K L L E + Sbjct: 70 KANLEDPDQYSGKYFFVPERARWNDGWVDEKWNVHPALKHVKENVGTALNKALEALEEAN 129 Query: 83 KKLVQAVFHNVSTT------ITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQ 136 + +Q V +++ + + + N + + + + D G YE L++ Sbjct: 130 PEALQDVLKHINFNKKIGQNTLDDDTLVNFIQNFEKIPLRDE-DFEFPDLLGTAYEWLIK 188 Query: 137 KNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDL 196 A+ AG+++TP +++ + + PQ V DP G+ G LI+A Y++ D Sbjct: 189 HFADSAGKKAGEFYTPAEVVRICVEICDPQEDMSVYDPTVGSGGMLIQARDYLRECGADA 248 Query: 197 DDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI-EGNLDHGGAIRLGNTLGSDGE 255 +L A G E + T + MN LLH I + +R DG Sbjct: 249 AEL-----------ALYGQEKMGTTWSICKMNMLLHGISHAVIRQQDTLREPQHQAEDG- 296 Query: 256 NLPKAHIVATNPPFGSAA-GTNITRTFVHPT------SNKQLCFMQHIIETLHPGGRAAV 308 NL + V NPPF +I P L F+QH++ L GR A Sbjct: 297 NLMRFDRVLANPPFSQNYIKKDIKHPGRFPVWMPEKGKKADLMFVQHMLAVLKHDGRMAC 356 Query: 309 VVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQD 368 V+P VLF G + + R+ +D+ +L ++ LP+ +FY G+ +L K A Sbjct: 357 VMPHGVLFRGAEEREARKYFIDRGYLEAVIGLPSNLFYGTGIPACILVLNKAGAAERK-- 414 Query: 369 KNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETE 428 V + + E + Y + ++ Sbjct: 415 -----HVLFINGDREYREGKAQNYLRPEDIDKIVHAY------RAGLEIPGYAQPVPVEA 463 Query: 429 VADSEENKNTDQHLA------TSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEP 482 + + N N +++ R + + D+L+ W ++ +P Sbjct: 464 ICAEDYNCNIRRYVDNAPPAEPHDVRAHLHGGVPVTEIDALEHFWQNYAGLRESCFVPRA 523 Query: 483 DVLAAEAMGELVQALSELDALMRELGASDE-ADLQRQLLEE 522 A A + AL++ + + A Q Q + E Sbjct: 524 VAAAGAAYADFAPALADKREIAAHINAHPGVTQRQAQFMAE 564 >UniRef50_A1ZTI9 Type I restriction-modification system specificity subunit n=2 Tax=Bacteria RepID=A1ZTI9_9SPHI Length = 921 Score = 342 bits (876), Expect = 2e-92, Method: Composition-based stats. Identities = 113/565 (20%), Positives = 207/565 (36%), Gaps = 76/565 (13%) Query: 6 LVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA------------------ 47 L L++ CD LR G + Y + +LFLK + ++ Sbjct: 10 LENFLFQACDILR-GNMDASEYKEYIFGILFLKRLNDKFEQDQEKRRKALEKKGLAAEVV 68 Query: 48 -----------EYLPEGYRWD--DLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVS 94 Y+PE RW D + + K L + + + + V ++ Sbjct: 69 ARALNKANAYDYYIPENARWKGKDGIQHLKKHVGDALNKALAAIEDANLDKLSGVLKSID 128 Query: 95 TTIT--------EPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGA 146 T + ++ + + D++D + + + D G YE L++ A+ Sbjct: 129 FNRTIGKNKKTLDDTKLINFIQHFDTVDLRDE-NFEFPDILGAAYEYLIKFFADSAGKKG 187 Query: 147 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDF 206 G+++TP ++K ++ LL+P P V DP G+ G LI+ YV+++ N+ L Sbjct: 188 GEFYTPAEVVKLMVQLLEPAPNAEVYDPTCGSGGMLIQCKNYVEARYNNASKL------- 240 Query: 207 QIHRAFIGLELVPGTRRLALMNCLLHDI-EGNLDHGGAIRLGNTLGSDGENLPKAHIVAT 265 +F G EL T L MN L HDI + ++ G I N L L + +V Sbjct: 241 ----SFYGQELSGTTWALCKMNMLFHDIYDAKIEQGDTI--NNPLHVVDGELQRFDVVMA 294 Query: 266 NPPFGSAAG-------TNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEG 318 NPPF + + R ++ S F+QH++ L GR VV+P VLF G Sbjct: 295 NPPFSADYKQDNIIGFKDRFRHWMPEKSKADFMFVQHMVRVLKDNGRMGVVMPHGVLFRG 354 Query: 319 GKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVY 378 D+R L+++ +L ++ LP +FY G+ +++ K + V Sbjct: 355 STEKDMRHWLLERGYLDAVIGLPASLFYGTGIPASLIIINKKGA-------DKRRKVLFI 407 Query: 379 DLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNT 438 + + E + VY + ++ E + + Sbjct: 408 NADREYKEEKNQNKLRPEDISKITYVYHQRQELPQYSRLMSYNDFLREDYNFNIRRYVDN 467 Query: 439 DQHLATSRWRKFSREWIRTAKSDSLDISW-----LKDKDSIDADSLPEPDVLAAEAMGE- 492 R I A+ +L+ W L+++ + S A + Sbjct: 468 SPPAEPQDVRAHLHGGIPAAEVAALEAYWQNYPGLRERVLVPYPSQAGYMQFADSIADKA 527 Query: 493 -LVQALSELDALMRELGASDEADLQ 516 L AL + + ++ +++ Q Sbjct: 528 TLKAALEQSPEIAQKHQQYEDSIAQ 552 >UniRef50_C6BT25 N-6 DNA methylase n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BT25_DESAD Length = 856 Score = 341 bits (875), Expect = 4e-92, Method: Composition-based stats. Identities = 104/494 (21%), Positives = 192/494 (38%), Gaps = 76/494 (15%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKE------------------ 42 + + L KL+K CD LR G + Y + +LFLK + Sbjct: 5 LTLSSLERKLFKACDILR-GNMEASEYKEYIFGMLFLKRLSDQFHKDRAILAQDLAAKGI 63 Query: 43 -----------TGQEAEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFH 91 Q Y+PE RW+ ++ I ++ K L + E + + +Q V Sbjct: 64 PEEAKAALLDKRNQYTFYVPESARWEQIQH-IKKDVGSGLNKALAAIEEANPETLQDVLK 122 Query: 92 NVSTT------ITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSG 145 +++ + + + + + + N + D G YE L++ A+ Sbjct: 123 SINFNRKVGQRTLDDSTLVEFIQHFNDIPLSND-DFEFPDLLGAAYEFLIKHFADSAGKK 181 Query: 146 AGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQD 205 G+++TP +++T++ +++PQ + DP AG+ G LI++ +YV+ ++ +L Sbjct: 182 GGEFYTPTEVVRTLVEIIEPQEGMGIYDPTAGSGGMLIQSAKYVQECGGNVKNL------ 235 Query: 206 FQIHRAFIGLELVPGTRRLALMNCLLHDI-EGNLDHGGAIRLGNTLGSD------GENLP 258 + G EL T + MN +LH I ++ ++ L D L Sbjct: 236 -----SLAGQELAGSTWSMCKMNMILHGIVSQDIRQEDVLKRPLHLKKDPDQNNQNHELK 290 Query: 259 KAHIVATNPPFGSAAGT------NITRTFVHPTSNK-QLCFMQHIIETLHPGGRAAVVVP 311 V NPPF + ++ T K L F+QH++ L G+ AV++P Sbjct: 291 TWDRVIANPPFSQNYSKKEMLFKDRFDVWLPTTGKKADLMFVQHMVAVLKNNGKCAVIMP 350 Query: 312 DNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNC 371 VLF GG+ + R ++K L I+ LP+G+FY G+ +L K A+ Sbjct: 351 HGVLFRGGEERNCREKFIEKGILEAIVGLPSGLFYGTGIPACILVLNKEGAADRK----- 405 Query: 372 TDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVAD 431 +V + + E + VY + ++S E+ Sbjct: 406 --EVLFINADREYKEGKNQNKLRPEDIAKITHVY------RNRLEVDKYSRMVPVQELEK 457 Query: 432 SEENKNTDQHLATS 445 + N N +++ S Sbjct: 458 EDFNCNIRRYVDNS 471 >UniRef50_A1AQ49 N-6 DNA methylase n=2 Tax=Proteobacteria RepID=A1AQ49_PELPD Length = 540 Score = 338 bits (867), Expect = 3e-91, Method: Composition-based stats. Identities = 106/554 (19%), Positives = 200/554 (36%), Gaps = 76/554 (13%) Query: 3 NNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQ----------------- 45 N +L+ LW D LR + Y + + L+F+K +T Q Sbjct: 2 NPELIKTLWATADKLRA-NMDAAEYKHIVLGLIFVKYISDTFQTRSSELRERFGNPDDEY 60 Query: 46 -----------------------EAEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDD 82 ++PE RW++++++ Q + + L E + Sbjct: 61 YIQDADDETLVCELEDRDYYREVNTFWVPEAARWENIRAQAKQPDIGKRIDDALTLIEAE 120 Query: 83 KKLVQAVFHNVSTTITEPK-QITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANE 141 ++ + + P ++ LV + ++ + +RD G +YE L + A+ Sbjct: 121 NPKLKGILDKRYARVQLPDGKLGELVDMVSTI-GFGVTGESARDILGQVYEYFLGQFASA 179 Query: 142 TKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDG 201 GQ++TP +++T++ +L P + V DP G+ G +++++++++ + D+ Sbjct: 180 EGKRGGQFYTPASIVRTLVAILAPHHGQ-VYDPCCGSGGMFVQSEKFIEAHGGRIGDV-- 236 Query: 202 DTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAH 261 + G E P T RLA MN + I+ NL A +T + +A Sbjct: 237 ---------SIYGQESNPTTWRLAAMNLAIRGIDFNLGKEPA----DTFVRNQHPDLRAD 283 Query: 262 IVATNPPFGSA-------AGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNV 314 V NPPF + G P N ++QH++ L P GRA +V+ + Sbjct: 284 FVLANPPFNVSDWWHPSLEGDPRWEYGTPPQGNANYAWLQHMLYHLKPTGRAGIVLANGS 343 Query: 315 LFEG-GKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTD 373 + +IRR L++ + ++ +P +F+ + + F K Q Sbjct: 344 MSSSQNSEGEIRRALVEADKVEVMVAMPGQLFFNTQIPACLWFLAK-------QKSVRQG 396 Query: 374 DVWVYDLRTNMPSFGK-RTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADS 432 +V D R + + F+DE +Q ET + Sbjct: 397 EVLFIDARKLGTMISRVQIEFSDEDIQRIADTVHAWRGDGEIPLNPPLPKGEAETIPPFT 456 Query: 433 EENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADS-LPEPDVLAAEAMG 491 + R S I ++ + D D E E +G Sbjct: 457 KGGPGGIYQDIPGFCRSVSLAEIAEHGHVLTPGRYVGAEAVEDDDEAFTEKMQRLTETLG 516 Query: 492 ELVQALSELDALMR 505 E + +ELD L+R Sbjct: 517 EQMARGAELDELIR 530 >UniRef50_B3EQE6 Type I restriction-modification system, M subunit n=30 Tax=Bacteria RepID=B3EQE6_CHLPB Length = 527 Score = 338 bits (866), Expect = 4e-91, Method: Composition-based stats. Identities = 112/509 (22%), Positives = 195/509 (38%), Gaps = 90/509 (17%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQE-AEYLPEGYRWDDL 59 ++ D+ + W CD R G V Y + + +LFLK + Q+ E + Y DD+ Sbjct: 5 IDQKDINSAAWSACDTFR-GVVDPAQYKDYILVMLFLKYISDVWQDHYEEYQKQYGDDDI 63 Query: 60 KSRIGQEQLQF------------------------------------------YRKMLVH 77 + R E+ +F +L H Sbjct: 64 RIRRKLERERFVLPVVKLTEKNDETGEEAVLDEFPATYYSLYERRSAANIGELINIVLDH 123 Query: 78 LGEDDKKLVQAVFHNVST--------TITEPKQITALVSNMDSLDWYNGAHGKSRDDFGD 129 + + +K ++ VF N+ T +++ L+ + S D G+ Sbjct: 124 IEDSNKVKLEGVFRNIDFNSEANLGKTKDRNRRLKQLLEDFHKPQLNMKPSLVSEDVIGN 183 Query: 130 MYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYV 189 Y L+++ A+++ AG++FTP + + + L P+P + + DPA G+ G LI+A + V Sbjct: 184 TYIYLIERFASDSGKKAGEFFTPFKVSELVAKLADPRPGDRICDPACGSGGLLIKAAKEV 243 Query: 190 KSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE-GNLDHGGAIRLGN 248 + A G E T L MN LH + ++ + + Sbjct: 244 GDRN----------------FALFGQESNGSTWALCRMNMFLHSFDSARIEWCDTL--NS 285 Query: 249 TLGSDGENLPKAHIVATNPPFG---------SAAGTNITRTFVHPTSNKQLCFMQHIIE- 298 L + + L K + V NPPF + N V P S F+ H++E Sbjct: 286 PLLVENDRLMKFNCVVANPPFSLDKWGAENAESDQYNRFWRGVPPKSKGDWSFISHMVEI 345 Query: 299 TLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFT 358 L GR AVVVP VLF G IR+ ++++ L ++ LP +F + +L F Sbjct: 346 ALEKEGRVAVVVPHGVLFRGAAEGRIRQKMIEENLLDAVIGLPGNLFQTTNIPVAILVFD 405 Query: 359 K---GTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPR 415 + GT + K DV D S + +DE + R Y E Sbjct: 406 RSREGTTKDTKSTKGENRDVLFVDASREFVSGKNQNTLSDEQIAKIMRTYRERTE----- 460 Query: 416 TEGEWSFNAEETEVADSEENKNTDQHLAT 444 +++ A+ E+ +++ N N +++ T Sbjct: 461 -VEKYAHVADVAEIKENDFNLNIPRYVDT 488 >UniRef50_A5UWR2 N-6 DNA methylase n=9 Tax=cellular organisms RepID=A5UWR2_ROSS1 Length = 523 Score = 337 bits (864), Expect = 6e-91, Method: Composition-based stats. Identities = 98/506 (19%), Positives = 185/506 (36%), Gaps = 72/506 (14%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA------------- 47 ++ + L LW +R G V + + + L+FLK + + Sbjct: 2 LDISTLETWLWDAACAIR-GPVDAPKFKDYILPLIFLKRLSDVFDDEIKRLSDVYGNCGL 60 Query: 48 ------------------EYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKL---V 86 Y+PE RW ++ R + QF + + ++ L + Sbjct: 61 VLHLLEQERERGQVHLVRFYIPENARWKAIRQRGVRTLGQFLTDAVRDVARENPALQGVI 120 Query: 87 QAVFHNVST---TITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETK 143 V N +T I ++ L+ + G D G YE LL+K A Sbjct: 121 NMVDFNATTAGQRIIPDDHLSKLIDVLSRHRL--GLQDVEPDILGRAYEYLLRKFAEGQG 178 Query: 144 SGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEAD-RYVKSQTNDLDDLDGD 202 AG+++TP + + LL PQPR V DP G+ G LI+ R +++ Sbjct: 179 QSAGEFYTPGEVAILMAQLLDPQPRMTVYDPTCGSGGLLIKCHLRLLETHGVRSGRKFST 238 Query: 203 TQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHI 262 G E+ P T +A MN ++HD+E ++ G +R + + G L Sbjct: 239 ATPGVAPLRLFGQEINPATFAMARMNAVIHDLEADIRIGDTMRHPAFVDAAG-RLQTFDR 297 Query: 263 VATNPPFGSAAGTNITRT--------FVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNV 314 V NP + + P S+ ++QH++ +LH G+ AVV+ Sbjct: 298 VTANPMWNQKFPVETYENDPYERFTLGIPPHSSADWGWLQHMLASLHERGKMAVVLDTGA 357 Query: 315 LFEG------GKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQD 368 + G + DIR+ +++ + ++ LP +FY +L + Sbjct: 358 VSRGSGNQGSNRERDIRKAFVERDLIEAVILLPENLFYNTTAPGIILVVNR--------R 409 Query: 369 KNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETE 428 K ++ + + + T+EH+ +Y + G + ++ Sbjct: 410 KARRGEILLINASQQFAKGRPKNYLTEEHIARIADIYHQWRVGANN--------HSPLHT 461 Query: 429 VADSEENKNTDQHLATSRWRKFSREW 454 + ++E D +L+ SR+ + + Sbjct: 462 IITTDEAARNDYNLSPSRYVSVNGKE 487 >UniRef50_A7HVM7 Type I restriction-modification system, M subunit n=14 Tax=cellular organisms RepID=A7HVM7_PARL1 Length = 505 Score = 337 bits (864), Expect = 7e-91, Method: Composition-based stats. Identities = 114/546 (20%), Positives = 200/546 (36%), Gaps = 95/546 (17%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQE-------------- 46 + + W CD R G V Y + + +LFLK + + Sbjct: 5 LTQQQVNQTAWAACDTFR-GVVDAGQYKDYILVMLFLKYISDLWNDHVEVYRKQFGEDEA 63 Query: 47 ---------AEYLPEGYRWDDLKSRIGQEQL-QFYRKMLVHLGEDDKKLVQAVFHNVSTT 96 LPEG + DL ++ + + + L + + ++ ++ VF N+ Sbjct: 64 RIRRRLERERFILPEGTSFYDLHAQRTEANIGELINIALEKIEDANRAKLEGVFRNIDFN 123 Query: 97 I--------TEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQ 148 +++ ++ + + D G+ Y L+ + A++ AG+ Sbjct: 124 SEANLGRVKDRNRRLKNMLEDFAKPALDLRPSRVTEDIIGECYIYLISRFASDAGKKAGE 183 Query: 149 YFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQI 208 ++TP + + + L P+P + + DPA G+ LI A V S+ Sbjct: 184 FYTPSAISRLLAKLAAPKPGDTICDPACGSGSLLIRAAEEVGSEN--------------- 228 Query: 209 HRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGS----DGENLPKAHIVA 264 A G E+ T LA MN LH + I +TL S +G++L K +V Sbjct: 229 -FALYGQEVNGATWALARMNMFLHAKDA-----ARIEWCDTLNSPALVEGDHLMKFDVVV 282 Query: 265 TNPPFG------SAAGTNITRTF---VHPTSNKQLCFMQHIIETLH-PGGRAAVVVPDNV 314 NPPF A T+ + F + P S F+ H+IE GR AV+VP V Sbjct: 283 ANPPFSLDKWGAENADTDQFKRFWRGIPPKSKGDYGFITHMIEIAKRQSGRVAVIVPHGV 342 Query: 315 LFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDD 374 LF GG IR+ L+++ L ++ LP +F G+ +L F + D Sbjct: 343 LFRGGAEGRIRQALIEENLLDAVVGLPANLFTTTGIPVAILVFDRSR--EQGGANEDRRD 400 Query: 375 VWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEE 434 V D + + H+ Y ++S A E+A+++ Sbjct: 401 VLFIDASKEFTPGKTQNVMDEAHIARVLEAYASRAETP------KYSHRASPEEIAENDF 454 Query: 435 NKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELV 494 N N +++ T + +D++ L + + AE G++ Sbjct: 455 NLNIPRYVDT------------FEPEEEIDVAAL-------QKQINTIEAELAEVRGKMA 495 Query: 495 QALSEL 500 L EL Sbjct: 496 GYLKEL 501 >UniRef50_B2HKY8 Type I restriction/modification system DNA methylase HsdM n=1 Tax=Mycobacterium marinum M RepID=B2HKY8_MYCMM Length = 484 Score = 336 bits (861), Expect = 1e-90, Method: Composition-based stats. Identities = 104/502 (20%), Positives = 190/502 (37%), Gaps = 37/502 (7%) Query: 4 NDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKET--GQEAEYLPEGYRWDDLKS 61 +L LWK + LR G + Y + + L+FLK + G++ +P RW+ L Sbjct: 7 KELKDTLWKGAEKLR-GSIPASQYKDVILGLVFLKFVSDARDGRKPFVVPPEARWEALAG 65 Query: 62 RIGQEQL-QFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAH 120 + Q ++ + + L + + +++ LV + + + Sbjct: 66 NAKSPDIGQLIDTAMLSVMTANPSLAATLPQ--LYHKVDQRRLGELVEVLGAARFSGRPS 123 Query: 121 GKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAG 180 ++RD G++YE L A G++FTP +++ I+ +L+P + DP G+ G Sbjct: 124 HRARDLMGEVYEYFLGNFARAEGRRGGEFFTPPSVVRVIVEILEPSSG-RIYDPCCGSGG 182 Query: 181 FLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDH 240 ++ +R++ + D + + G E V T R+A MN +H I+ D Sbjct: 183 MFVQTERFICAHDGDPAQI-----------SIYGQESVEQTWRMAKMNLAVHGID---DA 228 Query: 241 GGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAG-----TNITRTFVHPTSNKQLCFMQH 295 G R G+T +D + V NPPF R P +N ++QH Sbjct: 229 GLGARWGDTFATDQHDGVPMDYVMANPPFNIKDWARDEQDPRWRFGTPPAANANFAWIQH 288 Query: 296 IIETLHPGGRAAVVVPDNVLFEGGKGTD-IRRDLMDKCHLHTILRLPTGIFYAQGVKTNV 354 I+ L P G+A VV+ + + G D IR ++D + ++ LPT +F + G+ + Sbjct: 289 ILSKLAPTGQAGVVMANGSMSSKTNGEDRIRAGIIDADLVSCMVALPTQLFRSTGIPVCL 348 Query: 355 LFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGK-RTPFTDEHLQPFERVYGEDPHGLS 413 FF K K + V D R + TD+ + Y S Sbjct: 349 WFFAK-------DKKARSGQVLFIDARGLGSMVDRCERTLTDDDVARIGDTYHGWFGSAS 401 Query: 414 PRTEGE-WSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKD 472 +G + A +E + L R+ + + ++ L + Sbjct: 402 SVAKGTVYQDIPGFCRSASLDEIRAEGYVLTPGRYVG-TGASCADGEPIGDKLARLTTQL 460 Query: 473 SIDADSLPEPDVLAAEAMGELV 494 D + D +G + Sbjct: 461 LAALDESTKLDEAVRAQLGRVR 482 >UniRef50_B8HN07 N-6 DNA methylase n=2 Tax=Bacteria RepID=B8HN07_CYAP4 Length = 540 Score = 335 bits (860), Expect = 2e-90, Method: Composition-based stats. Identities = 104/502 (20%), Positives = 182/502 (36%), Gaps = 81/502 (16%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKE------------------- 42 NN L KLWK D LR + Y + + L+FLK + Sbjct: 11 NNESLEQKLWKAADKLRK-NIDAAEYKHIVLGLIFLKYISDAFDKLHAKLVAGEGEYAGA 69 Query: 43 --------TGQEAEYLPEGYRWDDLKSRIGQEQL-QFYRKMLVHLGEDDKKLVQAVFHNV 93 + ++P RW L+ + Q + Q + + + ++ KL++ + V Sbjct: 70 DPEDPDEYKAENVFFVPPDARWSVLQGQAKQPTIGQKVDEAMEAIERENPKLLKGILPKV 129 Query: 94 STTIT-EPKQITALVSNMDSLDWYNGAHGKS----------------RDDFGDMYEGLLQ 136 +P + L+ + S + +D G +YE L Sbjct: 130 YGQQKLDPTALGGLIDMIGSTNLAKAEAESDGQLVLETEPIAEPRRQQDLLGQVYEYFLG 189 Query: 137 KNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDL 196 + A GQ++TP ++K ++ +L+P V DP G+ G ++++++V L Sbjct: 190 QFALAEGKKGGQFYTPESVVKVLVEMLEPYKG-RVFDPCCGSGGMFVQSEKFVSHHQGRL 248 Query: 197 DDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGN--TLGSDG 254 +D+ + G E T +L MN + I+G+ IR + D Sbjct: 249 NDI-----------SIYGQESNETTYKLCRMNLAIRGIDGS-----NIRWNPEGSFLKDA 292 Query: 255 ENLPKAHIVATNPPFGSAAG-------TNITRTFVHPTSNKQLCFMQHIIETLHPGGRAA 307 KA V NPPF + + V P N ++QH + L G A Sbjct: 293 HKDLKADFVIANPPFNDSDWGGDLLRQDGRWQYGVPPVGNANFAWVQHFLYHLALTGAAG 352 Query: 308 VVVPDNVLFEGGKGT-DIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPN 366 V+ + L G +IR+ L+ + I+ LPT +FY G+ + F ++ N N Sbjct: 353 FVLSNGSLSSNTSGEGEIRKALVQADLVDCIVMLPTQLFYNTGIPACLWFLSRYKNGNKN 412 Query: 367 QDKNCTDDVWVYDLRTNMPSFGKRTP-FTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAE 425 +D+ +V D +R F +E +Q Y E R + Sbjct: 413 RDRK--GEVLFIDASELGYMVNRRNRAFAEEDIQKIAGTYHEW-----KRDGSTYQDIKG 465 Query: 426 ETEVADSEENKNTDQHLATSRW 447 + A E + + L R+ Sbjct: 466 FCKSATLAEIEKHNFVLTPGRY 487 >UniRef50_Q0KFR5 Type I restriction-modification system methylation subunit n=5 Tax=Proteobacteria RepID=Q0KFR5_RALEH Length = 835 Score = 334 bits (857), Expect = 5e-90, Method: Composition-based stats. Identities = 100/508 (19%), Positives = 167/508 (32%), Gaps = 88/508 (17%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKE------------------ 42 + L L+K D LR G + + + +LFLK C + Sbjct: 3 LTLPQLERHLFKAADILR-GKMDASEFKEYIFGMLFLKRCSDVFDQRREEVIAERMNAGE 61 Query: 43 ---------------TGQEAEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQ 87 G E ++P R+ L Q K L + + KL Sbjct: 62 SRANAEKSAELERWYKGAEYFWVPPRSRYKFLLDEAHQNVGDSLNKALSGIETANTKLYD 121 Query: 88 AVFH-----NVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANET 142 + H V + ++ L+++ N + D G YE L+ + A+ Sbjct: 122 VLEHIDFTRKVGQSKIPDIKLRQLITHFGIYRLRNE-DFEFPDLLGAAYEYLIGEFADSA 180 Query: 143 KSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGD 202 G+++TPR +++ ++ L++P + DP G+ G LI A Y+ D + Sbjct: 181 GKKGGEFYTPRSVVRMMVRLIQPTLAHDIYDPCCGSGGMLIAAKEYIDEHGEDGRKAN-- 238 Query: 203 TQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE-GNLDHGGAIRLGNTLGSDGENLPKAH 261 G E +A MN LLH I NL + + + +G L Sbjct: 239 ---------LFGQEFNGTVWSIAKMNMLLHGISTANLQNEDTLAEPQHV--EGGELMHFD 287 Query: 262 IVATNPPFGSAAGTNITRTFVHP------------------TSNKQLCFMQHIIETLHPG 303 V TNPPF G P L F+QH++ G Sbjct: 288 RVLTNPPFSINWGNTEKNADGTPAWSPKFPERFRYGQVPLGAKKADLMFLQHMLAVTRDG 347 Query: 304 GRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFT----K 359 G A V+P VLF GG+ IR +++ L +L + +FY G+ +L Sbjct: 348 GMVATVMPHGVLFRGGEEKAIRAGIVEDDLLEAVLGVAPNLFYGTGIPACILVLRQRVQN 407 Query: 360 GTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGE 419 G + V + + EH++ + E Sbjct: 408 GANRVSGKPAERRGKVLFINADREFFEGRAQNHLLPEHIEKIVTTF------------NE 455 Query: 420 WSFNAEETEVADSEENKNTDQHLATSRW 447 + + + D+ K D +L R+ Sbjct: 456 FKQVEGFSAIVDNATLKANDYNLNIRRY 483 >UniRef50_B5Y2R2 Type I restriction-modification system, M subunit n=21 Tax=Bacteria RepID=B5Y2R2_KLEP3 Length = 814 Score = 334 bits (856), Expect = 6e-90, Method: Composition-based stats. Identities = 100/474 (21%), Positives = 187/474 (39%), Gaps = 61/474 (12%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAE----YLPEGYRW 56 + +L + LW CD LR GG+ Y + + +LLF+K + + +P+G + Sbjct: 3 IKKTELYSSLWASCDELR-GGMDASQYKDYVLTLLFMKYVSDKYKGDPDGIILIPKGASF 61 Query: 57 DDLKSRIGQEQL-QFYRKMLVHLGEDD--KKLVQAVFHNVSTTITEPKQ----ITALVSN 109 DD+ + +++ K++ L E++ K ++ N + + K+ +T LV Sbjct: 62 DDMVALKNDKEIGDKINKIIRKLAEENDLKGVIDEADFNDEDKLGKGKEMIDRLTKLVGI 121 Query: 110 MDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPRE 169 + LD + D GD YE L++ A E+ GQ++TP + + + ++ P Sbjct: 122 FEGLDL-SSNRADGDDLLGDAYEYLMRHFATESGKSKGQFYTPAEVSRILAKVISITPDT 180 Query: 170 ----VVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLA 225 V DP G+ L++ + + + G E+ T LA Sbjct: 181 PQDATVYDPTCGSGSLLLKVSD-----------------ETRRGLSIFGQEMDNATSALA 223 Query: 226 LMNCLLHD-IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAG-------TNI 277 MN +LH+ + G + ++G+ L NPPF + + Sbjct: 224 RMNMILHNNATAKIWQGNTLSDPQWKEANGK-LKAFDFAVANPPFSNKNWTSGLDPKKDP 282 Query: 278 TRTFV---HPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHL 334 FV P N F+ HII++L G+ AV++P VLF G +IR +L+ + ++ Sbjct: 283 FERFVWGVPPEKNGDYAFLLHIIKSLKSTGKGAVILPHGVLFRGNAEANIRENLIKQGYI 342 Query: 335 HTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFT 394 I+ LP +FY G+ ++ K + +++ D G + Sbjct: 343 KGIIGLPANLFYGTGIPACIIVIDKEHAHSRKG-------IFMIDASRGFIKDGNKNRLR 395 Query: 395 DEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVA--DSEENKNTDQHLATSR 446 + V+ RT +S +E+A + N N +++ Sbjct: 396 SRDIHRIVDVFNH------QRTVSGYSRMVPLSEIASEQNNYNLNIPRYIDGGE 443 >UniRef50_D0LVD7 Site-specific DNA-methyltransferase (Adenine-specific) n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LVD7_HALO1 Length = 860 Score = 333 bits (855), Expect = 7e-90, Method: Composition-based stats. Identities = 100/489 (20%), Positives = 175/489 (35%), Gaps = 71/489 (14%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKE------------------ 42 + L L+ D LR G + + + +LF+K C + Sbjct: 22 LTLGQLERHLYAAADILR-GKMDASEFKEYIFGMLFIKRCSDEFEARREEILAEQQAAGA 80 Query: 43 -------------TGQEAEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAV 89 + ++P RW + S + ++ L L ED + V Sbjct: 81 SAEAAALAAEQPERYARSFFVPPSARWAQV-SALERDLGTGLNAALAAL-EDTNPALHGV 138 Query: 90 FHNVSTTIT------EPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETK 143 ++ T K++ ALV++ N S D G YE L+ + A+ Sbjct: 139 LRHIDFNRTVGKSRMPDKRLRALVAHFGRHRLRNRDFEFS-DMLGAAYEYLIGEFADSAG 197 Query: 144 SGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDT 203 G+++TPRP+++ I+ L P+P V DP +G+ G LI A +YV+ D L Sbjct: 198 KKGGEFYTPRPVVRLIVRLSDPRPGMRVYDPCSGSGGMLILARQYVQEHGGDAGSLG--- 254 Query: 204 QDFQIHRAFIGLELVPGTRRLALMNCLLHDI-EGNLDHGGAIRLGNTLGSDGENLPKAHI 262 G E G ++ MN LLH + + ++ +G + + L + Sbjct: 255 --------LYGQEDNGGVWTISQMNMLLHGVSDADIRNGDTLHEPLHIDPASGELLRFDR 306 Query: 263 VATNPPFGSAAGTN---ITRTF-----VHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNV 314 + TNPPF + + F H + QH++ L PGG A V+P V Sbjct: 307 IITNPPFAQNYSPDELPLPERFRFGMCPHAGKKADWMYAQHMLAALAPGGMAVTVMPHGV 366 Query: 315 LFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDD 374 LF GG IR +++ + ++ LP +FY + VL P + Sbjct: 367 LFRGGVEQAIRSRVLEADLVEAVIGLPPNLFYGTSIPACVLVLRAPEAKPPERQ----GR 422 Query: 375 VWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEE 434 V D + + EH++ + ++ E+ + Sbjct: 423 VLFVDASDEFHAARAQNHLQPEHVEKIATAFERFAEVPG------YASVVSVDEILAAGG 476 Query: 435 NKNTDQHLA 443 N N +++ Sbjct: 477 NLNIRSYVS 485 >UniRef50_C9KRW3 Type I restriction-modification system, M subunit n=9 Tax=Bacteroidales RepID=C9KRW3_9BACE Length = 497 Score = 333 bits (855), Expect = 8e-90, Method: Composition-based stats. Identities = 108/492 (21%), Positives = 202/492 (41%), Gaps = 76/492 (15%) Query: 4 NDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA---------------- 47 DL L++ C+ +R G VS N+ + + LL+ K + E Sbjct: 14 QDLYNFLFEACNIIR-GPVSQDNFKDYITPLLYYKRISDVYDEETEEALISSGGDKEYAS 72 Query: 48 ------EYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHN------VST 95 +P+G W +++ R + + + + + V + Sbjct: 73 LPEQHRFVIPDGCHWQEVRERT-ENLGAAIVGAMRQIEIANPDTLYGVLSMFSSQKWTNK 131 Query: 96 TITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPL 155 I +I L+ ++ N + D GD YE LL+K A+++K+ AG+++TPR + Sbjct: 132 AILNDSKIRDLIEHLSKRKLGNKDY--PADLMGDAYEILLKKFADDSKAQAGEFYTPRSV 189 Query: 156 IKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGL 215 ++ ++H+L PQP E V DPA G+ G LIEA RY+ D + G Sbjct: 190 VRLLVHILDPQPGETVYDPACGSGGMLIEAIRYMHD-------------DSLCCGSIFGQ 236 Query: 216 ELVPGTRRLALMNCLLHDI-EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFG---- 270 E +A MN LH + N+ G +R L G N+ K V NPPF Sbjct: 237 EKNVVNAAIAKMNLFLHGASDFNVMQGDTLRDPKIL--QGGNIAKFDCVIANPPFSLENW 294 Query: 271 --SAAGTNITRTFVHPT---SNKQLCFMQHIIETLHPG-GRAAVVVPDNVLFEGGKGTDI 324 + ++ + ++ T S ++QH+I ++ G GR AVV+P +LF G + +I Sbjct: 295 GATEWSSDKYKRNIYGTPSDSCGDYAWIQHMICSMSSGKGRMAVVMPQGILFRGNQEAEI 354 Query: 325 RRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNM 384 R+ L++ + ++ L +FY G+ L + A + + + + D + Sbjct: 355 RKQLVESNLIEAVVTLGDKLFYGTGLSPCFLIIRRMKQA------HHSGRILMIDGSQIL 408 Query: 385 PSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLAT 444 + + + +Y +S + + + +E ++ + +L+ Sbjct: 409 TQKRAQNILEENDIDRLYSLY------------QNYSDEEDYSRIVTLQEIRDKEYNLSP 456 Query: 445 SRWRKFSREWIR 456 +R+ + +E IR Sbjct: 457 NRYVVYHKEEIR 468 >UniRef50_B0TYP3 Type I restriction-modification system methyltransferase subunit like protein n=14 Tax=Bacteria RepID=B0TYP3_FRAP2 Length = 531 Score = 332 bits (851), Expect = 2e-89, Method: Composition-based stats. Identities = 110/552 (19%), Positives = 201/552 (36%), Gaps = 79/552 (14%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAE------------- 48 N + LW + LR G V Y + + L+FLK +T +E Sbjct: 9 NTKSMEETLWDSANKLR-GSVESSEYKHIVLGLIFLKFVSDTFEERREQLIAEGKEAFID 67 Query: 49 -----------YLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTI 97 YLPE RW +K Q+ + + E + ++ + + Sbjct: 68 MVEFYTMENVFYLPEESRWSYIKQNAKQDDIALKIDTALSTIEKNNPSLKGALPDNYFSR 127 Query: 98 TEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIK 157 ++ L S +D+++ N K D G +YE L K A G G+++TP+ ++ Sbjct: 128 LGLD-VSKLSSLIDTINNINTIADKGNDIVGRVYEYFLSKFAIAEGKGKGEFYTPKSIVN 186 Query: 158 TIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLEL 217 I ++++P + DPA G+ G +++ +++++ + D+ + G E Sbjct: 187 LIANMIEPYKG-KIYDPACGSGGMFVQSIKFIEAHKGNKKDI-----------SIYGQEY 234 Query: 218 VPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNI 277 T +LA MN + I NL A +T D KA + NPPF + Sbjct: 235 TGTTYKLAKMNLAICGISANLGDVPA----DTFFKDQHPDLKADFIMANPPFNQKDWRGV 290 Query: 278 TR---------TFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDL 328 V P SN ++ +I+ L G A ++ + L GG+ IR+ L Sbjct: 291 NELLDDPRWAGYDVPPKSNANYGWILNIVSKLSQNGVAGFILANGALSGGGEEYKIRKKL 350 Query: 329 MDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANP-------NQDKNCTDDVWVYDLR 381 ++ + IL LP +FY + + ++ T ++ DLR Sbjct: 351 IENDLVEAILILPQNMFYTTNISVTIWILNANKKQREFEQNGKQKNHRDRTKEILFMDLR 410 Query: 382 TNMPSFGKR-TPFTDEHLQPFERVYGEDP----HGLSPRTEGEWSFNAEETEVADSEENK 436 F K+ F ++++Q Y H + E + +E Sbjct: 411 QKGVPFEKKFIQFDEKNIQEISNTYHTWQSIGGHSKIDSESQGYKDIPEYCKSVTLDEVI 470 Query: 437 NTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQA 496 D L S++ +F +D++ + + E + + Q+ Sbjct: 471 AKDYSLVPSKYIEFVN----------------RDENIDFDEKMKNLQTEFRELLKQEEQS 514 Query: 497 LSELDALMRELG 508 EL + +ELG Sbjct: 515 KKELLKVFKELG 526 >UniRef50_A9B990 N-6 DNA methylase n=2 Tax=Chloroflexi (class) RepID=A9B990_HERA2 Length = 571 Score = 329 bits (844), Expect = 1e-88, Method: Composition-based stats. Identities = 147/572 (25%), Positives = 241/572 (42%), Gaps = 86/572 (15%) Query: 2 NNNDLVAKLWKLCDNLRD----GGVSYQNYVNELASLLFLKMCKETGQ---------EAE 48 N L + +W+ CD LR GGV Y LA LLFL+ + E Sbjct: 11 TNETLRSNMWRACDILRRDNNVGGV--MQYTEHLAWLLFLRFMDMEEKRRVDLALLNEMP 68 Query: 49 YLP---EGYRWDDLKS------RIGQEQLQFYRKMLVH-----LGEDDKKLVQAVFHNVS 94 Y P WD S R E +QF R L+ G + + +F + S Sbjct: 69 YHPVLHGDLSWDFWASPEALERRSAPELIQFVRGRLLPGLATLTGSSLARTIAGIFSDES 128 Query: 95 TTITE----------PKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKS 144 T + ++ ++S+ + + + F YE LL++ ++E Sbjct: 129 TGDQNVVRAVPVCASGYNLKDVLEIINSIHFELDSDLFTISLF---YEDLLERMSSE-NR 184 Query: 145 GAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQ 204 AG++ TPR +I+ ++ L+ PQ E V DPA G+AGFL++A +++ +++ Sbjct: 185 TAGEFHTPRAVIRFMVELMAPQIGETVYDPAYGSAGFLVQAFLFMQPFARTIEEHTS--- 241 Query: 205 DFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGS--DGENLPKAHI 262 + F G+E + L MN +LH + + NTL G++ + + Sbjct: 242 --LHEQTFFGIEKKALSALLGTMNMVLHGVNA-----PKLLRANTLEESMQGDSGQRYDV 294 Query: 263 VATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLH--PGGRAAVVVPDNVLFEGGK 320 V TNPPFG G +I + F + +L F+QHII+ L P RAA+VVP+ LF G Sbjct: 295 VLTNPPFGGTEGAHIQQNFAVKANATELLFLQHIIKKLKRTPNARAAIVVPEGTLFRSGA 354 Query: 321 GTDIRRDLMDKCHLHTILRLPTGIFYAQG-VKTNVLFFTKGTVANPNQDKNCTDDVWVYD 379 ++++DL+ + HL + LP G F VKT +LF K + + ++ W Y+ Sbjct: 355 FAEVKQDLLQQFHLFAVFSLPPGTFAPYSDVKTAILFL-KRPDSLLIANPLAREETWFYE 413 Query: 380 --LRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEE--- 434 L + F K + +D H ++ LS E + + A+ S E Sbjct: 414 LPLPEGLKKFSKGSRISDSHFDEARHLWQVWSDYLSGNAERPFVYAADLRPHQTSNEPTP 473 Query: 435 -------NKNTDQHLATSRWRKFS-------REWIRTAK---SDSLDISWLKDKDSIDAD 477 NK T L++ R+F WI T S D+S ++ ++ + Sbjct: 474 IQETFFANKQTSLQLSSINNRQFEPVFARNINAWIETYNDIASRGFDLS-ARNPHRVEQE 532 Query: 478 SLPEPDVLAAEAMGELVQALSELDALMRELGA 509 S VL A L++ EL ++++ L A Sbjct: 533 SRESAFVLTA----RLLERSRELHSMIQSLHA 560 >UniRef50_C8XCE4 Site-specific DNA-methyltransferase (Adenine-specific) n=3 Tax=Actinomycetales RepID=C8XCE4_NAKMY Length = 548 Score = 329 bits (843), Expect = 2e-88, Method: Composition-based stats. Identities = 103/495 (20%), Positives = 185/495 (37%), Gaps = 68/495 (13%) Query: 4 NDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAE--------------- 48 +L LWK D LR G + Y + + L+FLK + E Sbjct: 26 KELKDTLWKAADKLR-GSMDASQYKDVILGLVFLKYVSDAFDERREQIRAELEADGIDED 84 Query: 49 ------------------YLPEGYRWDDLKSRIG----------QEQLQFYRKMLVHLGE 80 ++ RW L ++ Q + + +L + Sbjct: 85 QIDGFLDDVDEYRGHGVFWVNRDARWSYLAQHAKGIPAVGNEPPKQVGQLIDEAMDYLMD 144 Query: 81 DDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNAN 140 + L + + + +++ L+ +S + K+RD G++YE L+K A Sbjct: 145 ANPSLRATLPRIYNRDNVDQRRLGELLDLFNSARFTGQGATKARDLLGEVYEYFLEKFAK 204 Query: 141 ETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLD 200 G+++TP +++ ++ +L+P V DP G+ G ++ ++++++ + ++ Sbjct: 205 AEGKRGGEFYTPASVVRVLVEVLEPTRG-RVYDPCCGSGGMFVQTEKFLEAHHREGSEI- 262 Query: 201 GDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKA 260 + G EL T R+A MN +H + GNL R G+T D +A Sbjct: 263 ----------SVYGQELNERTWRMAKMNLAIHGLSGNLGP----RWGDTFARDIHPDVQA 308 Query: 261 HIVATNPPFGSAAG-----TNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVL 315 V NPPF + V P N ++QHII L PGG A VV+ + + Sbjct: 309 DYVLANPPFNIKDWARNDKDPRWKFGVPPAGNANYAWIQHIISKLAPGGSAGVVMANGSM 368 Query: 316 FE-GGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDD 374 G IR L++ + ++ LPT +F + G+ + FF K + + Sbjct: 369 STQSGGEGAIRAQLVEADLVSCMVALPTQLFRSTGIPVCLWFFAKDKTVGTGGSVDRSGR 428 Query: 375 VWVYDLRTNMPSFGK-RTPFTDEHLQPFERVYGEDPHGLSPRTEG-EWSFNAEETEVADS 432 V D R+ + +D+ + + S R G E++ A Sbjct: 429 VLFIDARSMGNMVDRAERSLSDDDIGLIAGTFHAWRGTASARAAGLEYADKPGFCYSATL 488 Query: 433 EENKNTDQHLATSRW 447 E K D L R+ Sbjct: 489 AEIKAADYALTPGRY 503 >UniRef50_A7BWE8 Type I restriction enzyme StySPI M protein n=1 Tax=Beggiatoa sp. PS RepID=A7BWE8_9GAMM Length = 469 Score = 328 bits (841), Expect = 3e-88, Method: Composition-based stats. Identities = 158/512 (30%), Positives = 251/512 (49%), Gaps = 58/512 (11%) Query: 5 DLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLKSRIG 64 + KL + +L+ G+ Y+ EL LLF KM G+ +P YRW+ L + G Sbjct: 6 NFAQKLIRPAKDLQKEGLPIHAYLTELTWLLFFKMAPILGK-IHLMPSDYRWELLIQKSG 64 Query: 65 QEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSR 124 EQ +Y++++ L + + ++ + T P+Q+ +++ + +++ Sbjct: 65 IEQYNYYQEVIKILSQASDPYIAGLYAHADTFFKTPEQLAQVITTLSTIN-------IPI 117 Query: 125 DDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIE 184 +D G++YE LL++ A + PR L+ ++ L +PQP E++QDP AGTA F++ Sbjct: 118 EDLGEVYEILLERCAYLDGGRL--HQVPRSLVDLMVILTQPQPGELIQDPLAGTASFVVA 175 Query: 185 ADRYVK----------SQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI 234 + Y++ SQ + + + F+ +E RLALMNCLLH I Sbjct: 176 TNEYMQVINDEFSESSSQGPPKNQTQNQNKFCTLETNFLAVEPDLIRHRLALMNCLLHRI 235 Query: 235 EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQ 294 N +R G++L S+ E P+A ++ + F S + + + L +Q Sbjct: 236 --NHSQHLPVRWGDSLLSNLEKWPQADVILSILVFASDLSEELGKH------DASLALLQ 287 Query: 295 HIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNV 354 HI +TL PGGRAAV++PD +L G +R L+D C LHT+LRLP GIFY V ++ Sbjct: 288 HIYQTLKPGGRAAVILPDKLLNAVGPAQQVRGTLLDTCVLHTVLRLPHGIFYPYKVPAHL 347 Query: 355 LFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSP 414 LFF +G A+ T++VW YDLR P FG+ EHL FE++YG+DP+G S Sbjct: 348 LFFWRGHTADEK-----TENVWFYDLRAKCPIFGQYLRLKREHLMSFEKIYGDDPYGKSK 402 Query: 415 RTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSI 474 R E + EEN RW FSR + +SD LD+ WL + + I Sbjct: 403 RREEQ------------DEEN----------RWHHFSRTHL-AQRSDRLDLCWLTEANII 439 Query: 475 DADSLPEPDVLAAEAMGELVQALSELDALMRE 506 + D+ E + + V L +L L+ E Sbjct: 440 TDNQNTTGDIW--EVLEKTVDDLEDLTKLLCE 469 >UniRef50_Q72BC7 Type I restriction-modification system, M subunit n=21 Tax=Bacteria RepID=Q72BC7_DESVH Length = 506 Score = 327 bits (839), Expect = 6e-88, Method: Composition-based stats. Identities = 108/487 (22%), Positives = 188/487 (38%), Gaps = 72/487 (14%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQ--------------- 45 ++ ++ +W CD R G V Y + + ++LFLK + Q Sbjct: 5 ISQKEVNDAVWNACDTFR-GVVDASAYKDYVLTMLFLKYISDVWQDNYDTYKAEYGDAPE 63 Query: 46 --------EAEYLPEGYRWDDLKSRIGQEQL-QFYRKMLVHLGEDDKKLVQAVFHNVSTT 96 E LP+ + L R + + K L + E + + VF ++S Sbjct: 64 LIEEMMKNERFVLPKDASFYALYERRFEAGNGERIDKALHAIEEANMGKLNDVFQDISFN 123 Query: 97 ITE-------PKQITALVSNMDSLDWYNGAHGKSR-DDFGDMYEGLLQKNANETKSGAGQ 148 T+ + ++ + + D G+ YE L++ A + AG+ Sbjct: 124 STKLGDDKQKNDILRHMLEDFSKPELNLRPSRIGNLDIIGNAYEFLIKHFAASSGKKAGE 183 Query: 149 YFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQI 208 ++TP + + I L+ PQ + + DPA G+A L++ + +K + + Sbjct: 184 FYTPPEVSQLIAELVNPQEGDEICDPACGSASLLMKCAKLIKDRFGN------------R 231 Query: 209 HRAFIGLELVPGTRRLALMNCLLHDIEGN-LDHGGAIRLGNTLGSDGENLPKAHIVATNP 267 A G E + T LA MN LH + + ++ G +R L D L IV NP Sbjct: 232 KYALYGQEAIGSTWSLAKMNMFLHSEDNHRIEWGDTLRNPLLLDGDDH-LKHFDIVVANP 290 Query: 268 PFG---------SAAGTNITRTFVHPTSNKQLCFMQHIIETLHPG-GRAAVVVPDNVLFE 317 PF A R + P + F+ H+IETL PG GR VVVP VLF Sbjct: 291 PFSLDKWGHEAAEADRFGRFRRGIPPKTKGDYAFILHMIETLKPGTGRMGVVVPHGVLFR 350 Query: 318 GGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWV 377 +IR+ L+ + L ++ LP +FY G+ +L F K ++V Sbjct: 351 ASSEGEIRKQLIKENLLDMVIGLPEKLFYGTGIPAAILVFRKNKK---------DNNVLF 401 Query: 378 YDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKN 437 D + DE +Q + + ++++ A E+ +++ N N Sbjct: 402 IDASREYQDGKNQNFLRDEDIQKVLDT------AKARESVDKYAYLATLEEIRENDFNLN 455 Query: 438 TDQHLAT 444 +++ T Sbjct: 456 IPRYVDT 462 >UniRef50_A6LK23 Type I restriction-modification system, M subunit n=1 Tax=Thermosipho melanesiensis BI429 RepID=A6LK23_THEM4 Length = 799 Score = 327 bits (838), Expect = 6e-88, Method: Composition-based stats. Identities = 100/482 (20%), Positives = 189/482 (39%), Gaps = 66/482 (13%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEY----LPEGYRW 56 M L LW+ + LR GG+ Y N + ++LF+K + + Y +PE + Sbjct: 3 MRKTQLYTHLWEAANELR-GGMDASQYKNYVLTILFVKYVTDRYKNDPYADFVVPEDGSF 61 Query: 57 DDLKSRIGQEQL-QFYRKMLVHLGEDD--KKLVQAVFHNVSTTITEPK----QITALVSN 109 D L G+ + + K+L L E++ K ++ V + ST + K ++T L++ Sbjct: 62 DALVEAKGKPDIGERINKVLARLAEENELKGVIDLVDFDDSTKLGNGKDKVDKLTKLIAI 121 Query: 110 MDSLDW-YNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQ-- 166 ++ + ++ D GD+YE ++K A E GQ++TP + + + ++ + Sbjct: 122 FENPELNFSKNRADGDDILGDVYEYFMKKFATEAGKSKGQFYTPAEVSRIMAKIIGIENA 181 Query: 167 --PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRL 224 P + DP G+ L++ + + + G E+ L Sbjct: 182 NSPDQTAYDPTCGSGSLLLKVAD-----------------EAPVEISLYGQEIDIDVANL 224 Query: 225 ALMNCLLHDI-EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTN------- 276 A MN +LH + ++ G + DG +L NPPF N Sbjct: 225 ARMNMILHGKPDAVIEQGNTLSDPKFKNKDG-SLKTFDFAVANPPFSQKNWMNGVDPEND 283 Query: 277 ---ITRTFVHPTSNKQLCFMQHIIETLHPG-GRAAVVVPDNVLFEGGKGTDIRRDLMDKC 332 + P N F+ H I++L PG GR A+++P VLF G +IRR+L+ K Sbjct: 284 SFHRFDDGIPPAKNGDYAFLLHFIKSLKPGKGRGAIILPHGVLFRGNAEAEIRRNLVKKG 343 Query: 333 HLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTP 392 ++ I+ LP +FY G+ ++ K ++ + +++ D G + Sbjct: 344 YIKGIIGLPPNLFYGTGIPAIIMVIDK-------ENAHARKGIFMIDASKGFRKDGPKNR 396 Query: 393 FTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSR 452 + + + + + + EE + D +L R+ + Sbjct: 397 LRERDIHKIVTTF------------VNFEEIPGYSRMVSLEEIEKNDYNLNIPRYVDSTE 444 Query: 453 EW 454 E Sbjct: 445 EE 446 >UniRef50_B1MYY1 Type I restriction-modification system, M subunit n=2 Tax=Lactobacillales RepID=B1MYY1_LEUCK Length = 531 Score = 326 bits (836), Expect = 1e-87, Method: Composition-based stats. Identities = 113/576 (19%), Positives = 195/576 (33%), Gaps = 130/576 (22%) Query: 6 LVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEG------------ 53 L +LW D LR G + Y N L L+F K ++ Y E Sbjct: 5 LEQQLWAAADILR-GKMDASEYKNYLLGLVFYKYLSDSELREVYEQENGQTTDFPTRSIQ 63 Query: 54 ----YRWDDLKSRIGQEQLQFYRKMLVHLG---------------------------EDD 82 W + S E +Q + + E Sbjct: 64 YQTLMDWFEDDSEELAEIIQLQKGYFIKPSQLFYTYRQQADRYEFNLTDLQAGFNELERQ 123 Query: 83 KKLVQAVFHNV--------STTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGL 134 + +F ++ S IT ++ +D +D + D GD YE L Sbjct: 124 GDQFKGLFADIDLNSTKLGSNAQQRNVTITEVLRALDEIDLF----EHDGDVIGDAYEYL 179 Query: 135 LQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREV----VQDPAAGTAGFLIEADRYVK 190 + + A AG+++TP+ + + I + + + DP G+ ++ RY+ Sbjct: 180 IGQFAAGAGKKAGEFYTPQAVSRIISEIAAIGQEDRAPFHIYDPTMGSGSLMLNIRRYLS 239 Query: 191 SQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTL 250 + + G EL T LA MN +LH ++ + + + G+TL Sbjct: 240 N---------------PKQVHYHGQELNTTTYNLARMNLILHGVDQDRMN---LNNGDTL 281 Query: 251 GSDG--ENLPKAHIVATNPPFGSAAG-------TNITRTF--VHPTSNKQLCFMQHIIET 299 +D E + V NPP+ + F + P S F+ H Sbjct: 282 DADWPTEEPHQFDAVVMNPPYSAKWSAADKFLSDQRFERFGKLAPKSKADFAFLLHGFYH 341 Query: 300 LHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTK 359 L G +V+P VLF G IR+ L++ + ++ LP IFY + T V+ K Sbjct: 342 LKDSGTMGIVLPHGVLFRGAAEGTIRQALLEMGAIDAVIGLPANIFYGTSIPTTVIILKK 401 Query: 360 GTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGE 419 + DV D + + + +H+Q Y E Sbjct: 402 NRSSR---------DVLFIDASQDFDKQKTQNVLSPKHIQKIVSAYKERTD--------- 443 Query: 420 WSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSL 479 + + VA +E K D +L R+ + +D+ +D L Sbjct: 444 ---TEKYSHVASYDEIKENDFNLNIPRY-----------------VDTFEDEAPVD---L 480 Query: 480 PEPDVLAAEAMGELVQALSELDALMRELGASDEADL 515 + ++ EL + S+L A+M EL ++E+ L Sbjct: 481 VKVSDEISKIDQELSEKQSDLLAMMNELAVNEESQL 516 >UniRef50_A6WNE4 Type I restriction-modification system, M subunit n=1 Tax=Shewanella baltica OS185 RepID=A6WNE4_SHEB8 Length = 847 Score = 326 bits (835), Expect = 2e-87, Method: Composition-based stats. Identities = 108/497 (21%), Positives = 192/497 (38%), Gaps = 78/497 (15%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEY----LPEGYRW 56 + N+L + LW CD LR GG+ Y + + +LLF+K + + Y +P+G + Sbjct: 3 IKKNELYSSLWASCDELR-GGMDASQYKDYVLTLLFMKYVSDKYKGDPYGMIVVPKGASF 61 Query: 57 DD-LKSRIGQEQLQFYRKMLVHLGEDD--KKLVQAVFHNVSTTITEPKQ----ITALVSN 109 DD + ++ +E K++ L E++ K ++ N + + K+ +T LV Sbjct: 62 DDMIAAKNDKEIGDKLNKIIGSLAEENDLKGVIDVADFNDEDKLGKGKEMVDRLTKLVGI 121 Query: 110 MDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQ--- 166 LD G D GD YE L++ A E+ GQ++TP + + + ++ Q Sbjct: 122 FQGLDL-TGNRADGDDLLGDAYEYLMRHFATESGKSKGQFYTPSEVSQILAKVVGIQNNT 180 Query: 167 -PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLA 225 V DP G+ L++A + + + G E+ T LA Sbjct: 181 PQDATVYDPTCGSGSLLLKA-----------------SNEAPRGLSIFGQEMDNATSALA 223 Query: 226 LMNCLLHD-IEGNLDHGGAIRLGNTLGSDGEN-LPKAHIVATNPPFGSAAGT-------N 276 MN +LH+ + G + + DG N L NPPF + T + Sbjct: 224 RMNMILHNNATAKIWKGNTL--ADPQWKDGANKLKTFDFAVANPPFSNKNWTSGLNPLND 281 Query: 277 ITRTFV---HPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCH 333 F P N F+ HII +L G+ AV++P VLF G +IR++L+ + + Sbjct: 282 PYGRFTWGTPPEKNGDYTFLLHIITSLKSTGKGAVILPHGVLFRGNAEANIRQNLIKQGY 341 Query: 334 LHTILRLPTGIFYAQGVKTNVLFFTKGTVAN-----------------------PNQDKN 370 + I+ LP +FY G+ ++ K N + Sbjct: 342 IKGIIGLPANLFYGTGIPACIIVIDKEHAQKAAVHFGEALQGERPLIEGHGNDVKNNQTH 401 Query: 371 CTDD-VWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEV 429 T +++ D G + + + V+ +S E+ Sbjct: 402 ITGRSIFMIDASKGFIKDGNKNRLRSQDIHKIVDVFN------KGLELERFSRLVTIDEI 455 Query: 430 ADSEENKNTDQHLATSR 446 A ++ N N +++ +S Sbjct: 456 AKNDYNLNIPRYIDSSE 472 >UniRef50_C8VZI4 Type I restriction-modification system, M subunit n=9 Tax=Bacteria RepID=C8VZI4_DESAS Length = 527 Score = 325 bits (833), Expect = 3e-87, Method: Composition-based stats. Identities = 106/550 (19%), Positives = 201/550 (36%), Gaps = 103/550 (18%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQE--------------- 46 D+ A +W+ + R G + NY + + +LF+K ++ E Sbjct: 4 TRKDIEAAIWRGANTFR-GAIDAANYKDYILPMLFVKYLSDSYLEKVEKLEQKYNDPVRA 62 Query: 47 -------AEYLPEGYRWDDL-KSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTT-- 96 + E +R+ L ++R + L + +D+ L VF N+ Sbjct: 63 ERAINRLPFAIKEKHRFSWLYQNRYNDNLGELINIALRGIEDDNPSLFTGVFRNIDFNSE 122 Query: 97 ------ITEPKQITALVSNMDSLDWYNGA-----HGKSRDDFGDMYEGLLQKNANETKSG 145 + ++ L+ + + LD A + D GD YE ++ + A + Sbjct: 123 AMLGNHNQKNTRLRELLEDFEPLDLRPSAIEPEEGKVAADTIGDAYEYMIGEFARQAGKK 182 Query: 146 AGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADR-YVKSQTNDLDDLDGDTQ 204 AG +FTP + + I ++ P+ + + DP G+ LI + ++ + ++ L Sbjct: 183 AGSFFTPSEVSELIARIVNPKISDTMYDPTCGSGSLLIRTGKKAIEKENGNIKTL----- 237 Query: 205 DFQIHRAFIGLELVPGTRRLALMNCLLHDI-EGNLDHGGAIRLGNTLGSDGENLPKAHIV 263 A G E+ + +A MN LH+I + + G ++ L DG NL + ++ Sbjct: 238 ------ALYGQEMNGSSWSMAKMNMFLHEIMDARIAWGDSLANPMHLDPDG-NLMQFDVI 290 Query: 264 ATNPPFGSAAGT----------------------NITRTF---VHPTSNKQLCFMQHIIE 298 N PF + F V P S F+ H+I Sbjct: 291 VANMPFSQDKWAAGFNTGGEMTGKGKQFKMEASLDKFHRFDWGVPPASKGDWAFLLHMIA 350 Query: 299 TLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFT 358 +L GGR A V P VLF G IR+ ++++ L ++ LP +FY G+ +L F Sbjct: 351 SLKSGGRIAAVAPHGVLFRGASEGRIRQAVIERNLLDAVIGLPANLFYGTGIPACILVFK 410 Query: 359 KGTVANPNQDKNCTDDVWVYDLRTN-------MPSFGKRTPFTDEHLQPFERVYGEDPHG 411 K +DV D + +H++ + Y Sbjct: 411 KNRN---------RNDVLFIDASGKDEKGHLRYRKDKNQNRLETKHIEDIVKAYETRSDI 461 Query: 412 LSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDK 471 + + + A E+ +E N N +++ T F E + + +I+ ++ + Sbjct: 462 I------KLAHVATLDEIKANEYNLNIPRYVDT-----FEEEDLVNIEEVKNNIANIQKE 510 Query: 472 DSIDADSLPE 481 + + E Sbjct: 511 LAEVEAQMAE 520 >UniRef50_C6DZ06 Type I restriction-modification system, M subunit n=28 Tax=cellular organisms RepID=C6DZ06_GEOSM Length = 827 Score = 324 bits (831), Expect = 4e-87, Method: Composition-based stats. Identities = 104/481 (21%), Positives = 183/481 (38%), Gaps = 72/481 (14%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAE------YLPEGY 54 + +DL + LW CD LR GG+ Y + + +LF+K + +A+ +P G Sbjct: 3 VKKSDLYSSLWASCDELR-GGMDASQYKDYVLFMLFIKYISDKYADADCFAPAVVIPPGA 61 Query: 55 RWDDL-----KSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTIT------EPKQI 103 + D+ KS IG++ LV E ++L ++ F + + +++ Sbjct: 62 SFKDMIVLKGKSDIGEKINTQVIAPLVKSNE--RRLGRSDFPDFDDPNRLGEGQAKVERL 119 Query: 104 TALVSNMDSLDW-YNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHL 162 T L+S ++ ++ + D GD YE L++ A E+ GQ++TP + + + + Sbjct: 120 TNLISIFENPALDFSKNRAEHDDILGDAYEYLMRHFATESGKSKGQFYTPSEVSRVVAKV 179 Query: 163 LKPQPREVV-----QDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLEL 217 + +V DP G+ L++ + H G E Sbjct: 180 IGISRANIVASTSAYDPTCGSGSLLLKVAE-----------------EAGKHITLEGQEK 222 Query: 218 VPGTRRLALMNCLLHDIE-GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGT- 275 T LA MN +LH N+ G + DG+ L V NPPF + Sbjct: 223 DVTTAGLARMNMILHHFPTANILSGNTLAAPKF--KDGKQLRTYDYVVANPPFSDKTWST 280 Query: 276 ------NITRTF---VHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRR 326 + F V PT ++ HII ++ G+AA ++P VLF G IR+ Sbjct: 281 GLLPANDDFERFAWGVPPTKQGDYAYLLHIIRSMKSTGKAACILPHGVLFRGNAEATIRK 340 Query: 327 DLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPS 386 L+ +L I+ LP +FY G+ +L K A V++ D Sbjct: 341 QLVRSGYLKGIIGLPANLFYGTGIPACILVLDKENAAGRKG-------VFMIDASKGFIK 393 Query: 387 FGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSR 446 G + D+ + + ++ ++ E+A D +L R Sbjct: 394 DGNKNRLRDQDIHKIVDTF-----ARQDDSDPRYARLVPFDEIA----APANDYNLNLPR 444 Query: 447 W 447 + Sbjct: 445 Y 445 >UniRef50_A8L1U0 N-6 DNA methylase n=3 Tax=Actinomycetales RepID=A8L1U0_FRASN Length = 564 Score = 324 bits (831), Expect = 4e-87, Method: Composition-based stats. Identities = 105/563 (18%), Positives = 188/563 (33%), Gaps = 87/563 (15%) Query: 5 DLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAE---------------- 48 L LWK D LR G + Y + + L+FLK + E Sbjct: 17 QLRETLWKTADKLR-GSMDAAQYKDFVLVLIFLKYVSDAFAERREQIRQDVLADGIDESR 75 Query: 49 -----------------YLPEGYRWDDLKSRIGQEQL-QFYRKMLVHLGEDDKKLVQAVF 90 ++P RW+ + + + + + + + + L + Sbjct: 76 AEEFLDDVDEYAGQGVFWVPGRARWEHIAANAKSAGIGELLNAAMDAVMKTNPALTGVLP 135 Query: 91 HNVSTTITEPKQITALVSNMDSLDW-----------------------------YNGAHG 121 + + ++ LV + + A Sbjct: 136 RIFNGEGVDQHRLGELVDLLGDARFTGHRATERPPSTPTGEDGALFGESAAGVPTEAATR 195 Query: 122 KSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGF 181 +RD G++YE L++ A G+++TP +++ ++ +L+P V DP G+ G Sbjct: 196 PARDVLGEVYEYFLERFARAEGKRGGEFYTPASVVRLLVEVLEPYEG-RVYDPCCGSGGM 254 Query: 182 LIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHG 241 ++A+++V + D A G E T RLA MN +H I G+L Sbjct: 255 FVQAEKFVVAHRGLTHSGD---------IAVYGQESNERTWRLAKMNLAIHGITGDL--- 302 Query: 242 GAIRLGNTLGSDGENLPKAHIVATNPPFGSAAG-----TNITRTFVHPTSNKQLCFMQHI 296 + R +T +D +A + NPPF + R PT N ++QHI Sbjct: 303 -SARWDDTFRNDRHPDLRADFILANPPFNMSDWARTVDDQRWRYGTPPTGNANFAWLQHI 361 Query: 297 IETLHPGGRAAVVVPDNVLFEGGKGT-DIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVL 355 I L G A VV+ + + G +IR L++ + ++ LP +F + + Sbjct: 362 IAKLGSRGTAGVVMANGSMSSKQSGEGEIRAALVEADLVACMIALPPQLFRTTQIPACLW 421 Query: 356 FFTKGTVANPNQ-DKNCTDDVWVYDLRTNMPSFGKR-TPFTDEHLQPFERVYGEDPHGLS 413 FF K + + D R + TD L+ Y S Sbjct: 422 FFAKDKGQLGARWLAERRGETLFIDARDMGTMIDRTERILTDGDLEKITDTYRAWRGAKS 481 Query: 414 PRTEG-EWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKD 472 R +G + A +EE + D L R+ + I + + I L + Sbjct: 482 ARDKGLAYENIPGFCYSASTEEIRTHDHVLTPGRYVGAAEADISNDEPMAEKIERLAKEL 541 Query: 473 SIDADSLPEPDVLAAEAMGELVQ 495 I + + + L Sbjct: 542 FIHFEESARLEKEVRSQLERLDA 564 >UniRef50_Q3ADV1 Type I restriction-modification system, M subunit n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ADV1_CARHZ Length = 814 Score = 324 bits (831), Expect = 5e-87, Method: Composition-based stats. Identities = 105/517 (20%), Positives = 194/517 (37%), Gaps = 74/517 (14%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQ--------------- 45 + L L+K D LR G + Y + +LFLK + Sbjct: 8 ITLAQLETHLFKAADILR-GKMDASEYKEYIFGMLFLKYTSDVFAAKKLELENMYKNLGF 66 Query: 46 ---------------EAEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVF 90 + Y+P RW+ + + + ++ K L L E + +L V Sbjct: 67 SDEQIKELTEDPNSYDIFYVPPKARWEYILN-LKEDVGNQLNKALSALEEANPEL-DGVL 124 Query: 91 HNVSTTITEPKQITALVSNMDSLDWYNGAHGKSR-----DDFGDMYEGLLQKNANETKSG 145 ++ T+ K +D + +N D G YE LL++ A+ Sbjct: 125 KHIDFNATKGKIKLKDQQLIDLIHHFNKYTLTPESFEFPDLLGAAYEYLLKEFADSAGKK 184 Query: 146 AGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQD 205 G+++TP + K ++ L+KP V DP G+ GFLIEA YV+ + D +L Sbjct: 185 GGEFYTPAGVKKLMVRLVKPGENMTVYDPTVGSGGFLIEAFHYVEEKGQDRYNLG----- 239 Query: 206 FQIHRAFIGLELVPGTRRLALMNCLLHDI-EGNLDHGGAIRLGNTLGSDGENLPKAHIVA 264 G EL T + MN +LH I + ++++ + L + + + V Sbjct: 240 ------LYGQELNGLTWSICKMNMILHGISDAHIENEDVLTTPMFLEN--GYIKRFDRVL 291 Query: 265 TNPPFGS---AAGTNITRTFVH-----PTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLF 316 NPPF A F + L F+QH+I +L G A V+P VLF Sbjct: 292 ANPPFSENYTRANMQYPERFKYGFTPETGKKADLMFLQHMIASLKDDGIMATVMPHGVLF 351 Query: 317 EGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVW 376 GG+ IR ++ + + I+ LP +FY G+ ++ K ++ + + Sbjct: 352 RGGQEKVIREGIVKEGIIEAIIGLPPKLFYNTGIPACIIVINKNKP------EHLKNKIL 405 Query: 377 VYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENK 436 + + E ++ V+ E + +S + E+ +++ N Sbjct: 406 FINADREYGEGRNQNFLRPEDIEKIVNVFDE------KKEIPGYSRLVDIKEIEENDFNL 459 Query: 437 NTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDS 473 N +++ S + E +R + + + ++ + Sbjct: 460 NIRRYVDNS--PEPEIEDVRAHLTGGVPLREVRRYEE 494 >UniRef50_D2R8Y7 Type I restriction-modification system, M subunit n=2 Tax=Bacteria RepID=D2R8Y7_9PLAN Length = 835 Score = 322 bits (825), Expect = 2e-86, Method: Composition-based stats. Identities = 90/457 (19%), Positives = 180/457 (39%), Gaps = 59/457 (12%) Query: 14 CDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEY----LPEGYRWDDLKSRIGQEQL- 68 CD LR GG+ Y + + LLFLK + Y +P+G + D+ + G + + Sbjct: 51 CDELR-GGMDASQYKDYVLVLLFLKYISDKYANVPYAPIEVPKGSSFKDMVALKGTKDIG 109 Query: 69 -QFYRKMLVHLGEDDKKLVQAVFHNVST---TITEPKQITALVSNMDSLDW-YNGAHGKS 123 +K++ + + ++ F++ + + ++T L++ ++ ++ Sbjct: 110 DDINKKIIAPIAQANRLSDMPDFNDSTKLGSGKEKVDRLTNLIAIFENKSLDFSKNRADG 169 Query: 124 RDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL-----KPQPREVVQDPAAGT 178 D GD YE L++ A E+ GQ++TP + + I ++ K V DP G+ Sbjct: 170 DDILGDAYEYLMRHFATESGKSKGQFYTPAEVSRIIAQIIGIKTAKTTGSTTVYDPTCGS 229 Query: 179 AGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE-GN 237 L++ + Q G E T LA MN +LH++ Sbjct: 230 GSLLLKVSD-----------------EAQTPVTLYGQEKDAATSGLARMNTILHNMPTAL 272 Query: 238 LDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGT-------NITRTF---VHPTSN 287 ++ G + + DG +L V NPPF + + F + P Sbjct: 273 IEQGNTLSNPRFV--DGSSLKTFDYVVANPPFSDKRWSTGLDPASDPHARFTLGIPPAKQ 330 Query: 288 KQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYA 347 ++ HII +L G+ A ++P VLF G +IR++L+ K ++ I+ LP +FY Sbjct: 331 GDYAYLLHIIRSLKSTGQGACILPHGVLFRGNAEAEIRKNLLRKGYIKGIIGLPANLFYG 390 Query: 348 QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGE 407 G+ ++ K ++ N +++ D + G + + + + Sbjct: 391 TGIPACIVVIDK-------KEANRRQAIFMIDASSGYMKDGPKNRLRARDIHKIVDTFNQ 443 Query: 408 DPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLAT 444 ++S E+ ++ N N +++ + Sbjct: 444 QLE------VPKYSRLVTIEEIEKNDFNLNLPRYIDS 474 >UniRef50_Q73QS4 Type I restriction-modification system, M subunit n=1 Tax=Treponema denticola RepID=Q73QS4_TREDE Length = 871 Score = 321 bits (823), Expect = 4e-86, Method: Composition-based stats. Identities = 101/499 (20%), Positives = 196/499 (39%), Gaps = 63/499 (12%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEY----LPEGYRW 56 + ++L LW CD+LR GG+ Y + + +LLF+K + ++ Y +PEG + Sbjct: 3 VRKSELYGSLWASCDSLR-GGMDSSQYKDYILTLLFVKYVSDKYKDMPYGEIEIPEGGSF 61 Query: 57 DDLKSRIGQEQL-QFYRKMLVHLGEDD--KKLVQAVFHNVSTTITEPKQITALVSNM--- 110 DD+ + G++ + + K++ L E + + ++ + N T +++ ++ + Sbjct: 62 DDMLALRGKKGIGEGIDKVIAKLAEANDLRGIIDNAYFNDPTKFGSGQEMVDKLTELLSI 121 Query: 111 --DSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQP- 167 D + + + D GD YE L++ A E+ GQ++TP + + + H++ + Sbjct: 122 FCDKMPNFGKNRAEGDDIIGDAYEYLMKNFATESGKSKGQFYTPAEVSRILAHVIGIEKA 181 Query: 168 ---REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRL 224 + DPA G+ LI A + A G E T L Sbjct: 182 KSGESTLYDPACGSGSLLIRAAETA-----------------PPNVAVFGQEKDITTAGL 224 Query: 225 ALMNCLLHDIE-GNLDHGGAIRLGNTLGSDGE-NLPKAHIVATNPPFGSAAGTNITRTF- 281 A MN +LH++ + G D E L + NPPF T+ + F Sbjct: 225 AKMNLVLHNVATAEIKSGNTFSEPKYKKHDDETALRQFDFAVVNPPFSDKNWTHGLQDFG 284 Query: 282 -------VHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHL 334 P N ++ H+I++L G+AAV++P VLF G IR+ L+ K + Sbjct: 285 RFDGYEERPPEKNGDFAWLLHVIKSLKRNGKAAVILPHGVLFRGNAEASIRKALIKKGFI 344 Query: 335 HTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFT 394 I+ LP +FY G+ ++ K +++ D + + Sbjct: 345 KGIIGLPPNLFYGTGIPACIIVIDKENAEKRKG-------IFIIDASKDFIKDNDKNRLR 397 Query: 395 DEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREW 454 + + +V+ + + +S E+ ++ N N +++ + Sbjct: 398 ERDIYKITKVFN------NKKELPYYSRFVFIDEIEQNDYNLNIPRYIQNGTSEEVQNIE 451 Query: 455 ------IRTAKSDSLDISW 467 I + ++L W Sbjct: 452 AHLRGGIPSEDIENLSAYW 470 >UniRef50_UPI0001BC44FA type I restriction-modification system DNA methylase n=1 Tax=Fusobacterium gonidiaformans ATCC 25563 RepID=UPI0001BC44FA Length = 502 Score = 321 bits (822), Expect = 4e-86, Method: Composition-based stats. Identities = 90/474 (18%), Positives = 183/474 (38%), Gaps = 63/474 (13%) Query: 6 LVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQ-------------------- 45 ++W L G + +Y + L+FL+ + + Sbjct: 11 FEKEIWDAACVLW-GHIPAADYRKVIVGLIFLRYISSSFEKKYKELLEEGYGFEDDRDAY 69 Query: 46 ---EAEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQ 102 ++P+ RW + + ++ + E + K ++ V + + K+ Sbjct: 70 MEDNIFFVPKEARWSTISAATHTAEIGMVIDNAMRAIEAENKTLKNVLPKIYASPDLDKR 129 Query: 103 ITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHL 162 + V ++ + + +S+D G YE + + A + G+++TP ++KTI+ + Sbjct: 130 VLGEVVDLFTNNINMEDTEESKDLLGRTYEYCIAQFAAYEGTKGGEFYTPSSIVKTIVEI 189 Query: 163 LKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTR 222 LKP V DP G+ G +++ +++++ + + + H + G E T Sbjct: 190 LKPFDNCRVYDPCCGSGGMFVQSVKFLQAHSGN-----------RNHISVFGQESNADTW 238 Query: 223 RLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTN------ 276 ++A MN + I+ N +T +D + KA + NPPF + Sbjct: 239 KMAKMNMAIRGIDANFGPY----QADTFFNDLHSTLKADFIMANPPFNLSNWGQDKLQDD 294 Query: 277 -ITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGT-DIRRDLMDKCHL 334 + + P N ++QH++ L P G+ +V+ + L G +IR+ +++ + Sbjct: 295 VRWKYGLPPAGNANYAWIQHMVHHLAPNGKIGLVLANGALSTQTSGEGNIRKAIIEDDLI 354 Query: 335 HTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSF-GKRTPF 393 I+ +PT +FY+ + + F +K K D R K F Sbjct: 355 EGIVAMPTQLFYSVTIPVTLWFISKN--------KKQKGKTLFIDARNMGFMVDRKHRDF 406 Query: 394 TDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRW 447 T+E +Q + G+ E E F A V ++EE + D L R+ Sbjct: 407 TEEDIQKLANTFTHFQEGI---LEDEKGFCA----VVETEEIRKQDYILTPGRY 453 >UniRef50_C3JA79 Type I restriction-modification system, M subunit n=2 Tax=Bacteria RepID=C3JA79_9PORP Length = 823 Score = 319 bits (818), Expect = 1e-85, Method: Composition-based stats. Identities = 98/488 (20%), Positives = 186/488 (38%), Gaps = 72/488 (14%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYL---PEGYRWD 57 + + L LW+ C+ LR G + Y + + +LF+K + + + PEG + Sbjct: 3 IKKSQLYRTLWESCNALR-GSMDASQYKDYVLIILFVKYLSDKAGQPGFRLNIPEGCSFR 61 Query: 58 DLKS-RIGQEQLQFYRKMLVHLGEDDKKLVQAV----FHNVST---TITEPKQITALVSN 109 D S + + + L + E + + + + F++ + T + ++ L+ Sbjct: 62 DFVSLKQNDKIGELMNIKLEAIKEMNARQIGDLALPNFNDPAKLGIGRTMVETLSRLIGV 121 Query: 110 M--DSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQP 167 D+LD ++ D GD YE L++ A E+ GQ++TP + + + +L+ Sbjct: 122 FENDALD-FSRNRAADDDLLGDAYEYLMKNFAAESGRRKGQFYTPAEVSRVMAKVLRIHE 180 Query: 168 ----REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRR 223 + + DP G+ L+ A + + G E T Sbjct: 181 LDRGEQTIYDPTCGSGSLLLRAL----------------AEASNPRVSICGQEKDGTTAA 224 Query: 224 LALMNCLLHDIEGNLDHGGAIRLGNTLGSDGEN----LPKAHIVATNPPFGSAAG----- 274 LA MN LLH I I++G+TLG L + NPPF Sbjct: 225 LAKMNMLLHGIS-----NSEIKVGDTLGDPQFKQMGILSTFDVCVANPPFSEKEWFSPAL 279 Query: 275 -----TNITRTFVHPTSNKQLCFMQHIIETLH-PGGRAAVVVPDNVLFEGGKGTDIRRDL 328 T+ + P F+ H+I ++ GR A ++P VLF G IR+D+ Sbjct: 280 EKDTYERWTKELLPPAKCGDYAFLMHLIASMKSEEGRGACILPHGVLFRGNAEYTIRKDI 339 Query: 329 MDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFG 388 + K ++ I+ LP +F+ G+ +++ K +D++ ++ D + G Sbjct: 340 IRKRYIKGIIGLPANLFFGTGIPASIIVIDK-------KDRDSRKGIFFIDAKEGYMKDG 392 Query: 389 KRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWR 448 + ++ ++ + EWS E+K D +L R+ Sbjct: 393 AKNRLREQDIKRIVDAWEAQQPIPHYCRMVEWSEI----------ESKKNDYNLNIPRYI 442 Query: 449 KFSREWIR 456 + I+ Sbjct: 443 QPRDTEIQ 450 >UniRef50_Q2FXD0 Type I restriction-modification system, M subunit n=142 Tax=Bacteria RepID=Q2FXD0_STAA8 Length = 579 Score = 318 bits (816), Expect = 3e-85, Method: Composition-based stats. Identities = 128/567 (22%), Positives = 213/567 (37%), Gaps = 122/567 (21%) Query: 3 NNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAE-------------- 48 +L KLW + ++LR G + + N + L+F + E ++ Sbjct: 72 QAELHKKLWSIANDLR-GNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQEA 130 Query: 49 YLPEGYRWD---DLKSRIG--QEQLQFYRKMLVHL----------------------GED 81 + E YR D +L ++G E + M+ + GE+ Sbjct: 131 WADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHLATAIRKVETSTLGEE 190 Query: 82 DKKLVQAVFHNVSTTIT----EPKQITALVSN-MDSLDWYNGAHGK-SRDDFGDMYEGLL 135 + +F ++ + T K+ TAL+S M +LD H D GD YE L+ Sbjct: 191 SENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEFLI 250 Query: 136 QKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREV--VQDPAAGTAGFLIEADRYVKSQT 193 + A AG+++TP+ + K + ++ ++ V DP G+ L+ + Sbjct: 251 GRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKLRHVYDPTCGSGSLLLRVGK------ 304 Query: 194 NDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSD 253 + Q++R + G E T LA MN LLHD+ IR +TL + Sbjct: 305 -----------ETQVYR-YFGQERNNTTYNLARMNMLLHDV---RYENFEIRNDDTLENP 349 Query: 254 GENLPKAHIVATNPPFGSAAGTN----ITRTF-----VHPTSNKQLCFMQHIIETLHPGG 304 V NPP+ + + F + P S F+QH++ L G Sbjct: 350 AFLGNTFDAVIANPPYSAKWTADSKFENDERFSGYGKLAPKSKADFAFIQHMVHYLDDEG 409 Query: 305 RAAVVVPDNVLFEGGKGTDIRRDLM-DKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVA 363 AVV+P VLF G IRR L+ +K +L ++ LP IFY + T +L F K Sbjct: 410 TMAVVLPHGVLFRGAAEGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVFKKC--- 466 Query: 364 NPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFN 423 + D+V D + + +D ++ Y T ++S++ Sbjct: 467 -----RQQDDNVLFIDASNDFEKGKNQNHLSDAQVERIIDTYK------RKATIDKYSYS 515 Query: 424 AEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADS----L 479 A E+AD++ N N +++ T +++ ID D L Sbjct: 516 ATLQEIADNDYNLNIPRYVDT-----------------------FEEEAPIDLDQVQQDL 552 Query: 480 PEPDVLAAEAMGELVQALSELDALMRE 506 D AE E+ L EL L E Sbjct: 553 KNIDKEIAEIEQEINAYLKELGVLKDE 579 >UniRef50_Q5LGD1 Putative modification protein of type I restriction-modification system n=1 Tax=Bacteroides fragilis NCTC 9343 RepID=Q5LGD1_BACFN Length = 890 Score = 318 bits (815), Expect = 3e-85, Method: Composition-based stats. Identities = 102/483 (21%), Positives = 194/483 (40%), Gaps = 59/483 (12%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA----EYLPEGYRW 56 + L + LW+ C+ LR G + Y N + ++LFLK + Q LPEG + Sbjct: 3 IKKTQLYSILWESCNILR-GSMDASQYKNYVLTMLFLKYISDKVQSDSDIFFDLPEGCFF 61 Query: 57 DDLKSRIGQEQL-QFYRKMLVHLGEDDKKLVQAV----FHNVSTTITEPKQITALVSNMD 111 +D+ + G+ + + +K L + + +L + F + + T ++ L S + Sbjct: 62 NDIVALKGKPNIGEEIQKKLHVIARANPRLDHIINEADFDDSTKLGTGKAKVDTLTSLIS 121 Query: 112 SLD----WYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL---- 163 ++ D GD YE L++ A E+ GQ++TP + + + L+ Sbjct: 122 VFQRDFLDFSKNRAGDDDLIGDAYEYLMKNFAAESGKKKGQFYTPAEVSRLMARLIGIHK 181 Query: 164 KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRR 223 +P+ + DP G+ L+ A + + + G EL TR Sbjct: 182 DNRPQISIYDPTCGSGSLLLRAAAEYTKHRDGV--------------SIFGQELDGATRG 227 Query: 224 LALMNCLLHD-IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSA---------- 272 +A+MN LH + L+ G I S L + V NPPF Sbjct: 228 MAVMNMYLHGYDDPELEVGDTIEKP-FFKSTPNQLETFNYVVANPPFSQKGWIKGEIKIN 286 Query: 273 -----AGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRD 327 G + + P + F+ HII++++ GR A ++P+ VLF G + +RR Sbjct: 287 DTFGRWGNSDNLPPIPPIGYEDYAFLLHIIKSINSQGRGACILPNGVLFRGNEEEAVRRK 346 Query: 328 LMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSF 387 +++K ++ I+ LPT +F+ G+ ++ K + +++ D R+ Sbjct: 347 IIEKRYIRGIISLPTNLFFGTGIPACIVIIDKAKTSTSKG-------IFMIDARSGFTKD 399 Query: 388 GKRTPFTDEHLQPFERVYG--EDPHGLSPRTEGEWSFNAEETEVADSE-ENKNTDQHLAT 444 G + ++ ++ + E+ + E + V +E N+ D +L Sbjct: 400 GAKNRLREQDIRRVFDAWEALENLEANGNLDDKEETIPHYARFVPYTEITNERNDCNLNV 459 Query: 445 SRW 447 SR+ Sbjct: 460 SRY 462 >UniRef50_A9A373 Type I restriction-modification system, M subunit n=1 Tax=Nitrosopumilus maritimus SCM1 RepID=A9A373_NITMS Length = 523 Score = 318 bits (814), Expect = 4e-85, Method: Composition-based stats. Identities = 105/511 (20%), Positives = 191/511 (37%), Gaps = 62/511 (12%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA------------- 47 + L +L+ D LR + + +LLFLK + +E Sbjct: 7 LTFEQLEQRLFDAADILRK-HLDASENRKPVLTLLFLKRLNDIFEENVEKLMKDEGLSKK 65 Query: 48 ----------EYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTI 97 YLPE RW+ L + ++ ++ + + ++K + I Sbjct: 66 EAENKRRHPIFYLPEDTRWNKL-QNVSEDVGSKIIEICKKIEDANQKKLGGTMMVSEFNI 124 Query: 98 TEPKQITALVSNMDSLDWYNG-------AHGKSRDDFGDMYEGLLQKNANETKSGAGQYF 150 E TALV +D + + ++ D FGD YE LL+ A+ETK GQ++ Sbjct: 125 KEKYPDTALVKLIDHFSTTDEGYFRLRNSDLENEDIFGDAYEQLLEMFASETKKKGGQFY 184 Query: 151 TPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHR 210 TPR +++ ++ L++P+ + DP G+ G LI + +YV+ + ++ + Sbjct: 185 TPRKVVQLLVELMEPKYDYRINDPTCGSGGMLIHSRQYVEKSLKKEKKSSKEIEELLKNL 244 Query: 211 AFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFG 270 G + T + MN ++H + G + DG+ L + V N PF Sbjct: 245 TLHGQDSNIDTVNMCKMNMVIHGVPSFSIEWGDVLESPKFVKDGK-LIEYDRVLANFPFS 303 Query: 271 SAA--------GTNITRTFVHPTSNK-QLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKG 321 G + + P +K F+ H++ +L+ G+AA+V VLF G Sbjct: 304 ENWEASGKENDGYGRFKYGIAPAKDKADFAFILHMLSSLNENGKAAIVCSQGVLFRGSSE 363 Query: 322 TDIRRDL--------MDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTD 373 IR ++ + + I+ LP +FY G+ VL K K + Sbjct: 364 QKIRENMIAGNKDENLQGDMIEAIIALPVALFYGTGIPACVLILNKNKP------KERKN 417 Query: 374 DVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSE 433 + R D+ ++ + + E ++ AE E+ ++E Sbjct: 418 KILFIYAANEFQEGKVRNKLRDKDIEHIVKAFKAFKD------EDKYCHVAELDEIRENE 471 Query: 434 ENKNTDQHLATSRWRKFSREWIRTAKSDSLD 464 N N +++ S K + LD Sbjct: 472 FNLNVPRYVDISEEEKIIDIQATIDELKKLD 502 >UniRef50_Q6YRQ9 Slr6095 protein n=4 Tax=Bacteria RepID=Q6YRQ9_SYNY3 Length = 477 Score = 318 bits (814), Expect = 4e-85, Method: Composition-based stats. Identities = 94/458 (20%), Positives = 168/458 (36%), Gaps = 72/458 (15%) Query: 34 LLFLKMCKETGQE------------------------------AEYLPEGYRWDDLKSRI 63 +LFLK + ++ ++PE RW ++ + Sbjct: 1 MLFLKRASDVFEQQYQQIIRDNLAKGRSEEEAKQRAERASSYQDFFVPERARWATIRDEL 60 Query: 64 GQEQLQFYRKMLVHLGEDD---KKLVQAVFHN--VSTTITEPKQITALVSNMDSLDWYNG 118 K L L E + ++ + N V T ++ L+ + + N Sbjct: 61 HDNVGNGLNKALAALEESNVALSGVLGHIDFNRKVGKTTLSDTKLRELIFHFNKYRLLNE 120 Query: 119 AHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGT 178 D G YE L+ + A+ G+++TPR +++ ++ L+KP + DP G+ Sbjct: 121 -DFVFPDLLGAAYEYLIAEFADSAGKKGGEFYTPRDVVQLMVRLVKPAAGMSIYDPCVGS 179 Query: 179 AGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI-EGN 237 G LI+A +Y++ D +L + G + G + +N LLH I + Sbjct: 180 GGMLIQAKQYIEECGGDSRNL-----------SLCGQDNNGGVWAICKINMLLHGIKDAR 228 Query: 238 LDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGS---AAGTNITRTFVHP-----TSNKQ 289 +++ ++ + DGE L + V +NPPF F H Sbjct: 229 IENEDTLQNPRHIV-DGE-LERFDRVLSNPPFSQNYEKTNLEFKNRFNHGWCPESGKKAD 286 Query: 290 LCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQG 349 L F QH++ L GG A V+P VLF GG IR+ L++K + I+ LP +FY G Sbjct: 287 LMFAQHMLSVLKVGGIVATVMPHGVLFRGGDEQKIRKSLIEKDQIEAIIGLPPNLFYGTG 346 Query: 350 VKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDP 409 + +L + P + V + + + EH++ + Sbjct: 347 IPACILVMRRAGEKLPER----RGKVLFINADAEFYAGRAQNYLKPEHIEKIVNAF---- 398 Query: 410 HGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRW 447 + E+ +EEN D + R+ Sbjct: 399 ---EAFVDIPGYAAVVSREILAAEEN---DFNCNIRRY 430 >UniRef50_A6NS04 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NS04_9BACE Length = 524 Score = 317 bits (813), Expect = 5e-85, Method: Composition-based stats. Identities = 106/548 (19%), Positives = 189/548 (34%), Gaps = 107/548 (19%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA-------------- 47 D+ L + D LRD + NY + + ++F+K ++ ++A Sbjct: 3 TKKDIENALMRGADTLRD-TIDAANYKDYVLPIMFVKYLSDSYEDALDELKKEYSGIRLE 61 Query: 48 ---EYLP----EGYRWDDL-KSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITE 99 YLP E + L R + Q + + D+ + + V + V Sbjct: 62 RQKRYLPFTIAEECSFQSLYDQRFSDKIGQLINAAMRKIEADNNQQLAGVLNTVDYNSEN 121 Query: 100 --------PKQITALVSNMDSLDWYNG-----AHGKSRDDFGDMYEGLLQKNANETKSGA 146 + L+ + +SL A D GD YE ++ + A+ A Sbjct: 122 ALGTLDHKKAILRDLLEDFESLSLRPSEIEVKAGQVPADVIGDAYEYMIGQFASMAGKKA 181 Query: 147 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDF 206 G ++TP + + + ++ QP E V DP G+ LI+A + + Sbjct: 182 GSFYTPAAVSEIMARIVDVQPGERVYDPTCGSGSLLIKAAK----------------KQN 225 Query: 207 QIHRAFIGLELVPGTRRLALMNCLLHDI-EGNLDHGGAIRLGNTLGSDGENLPKAHIVAT 265 + G E+ + +A MN +H+I + + G + L SDG NL + Sbjct: 226 SKEVSIYGQEVNGSSVAMAKMNMYIHEIRDAKIAWGDTLANPLFLDSDG-NLLLFDAIVA 284 Query: 266 NPPF-----------GSAAGTNITRTF---------------VHPTSNKQLCFMQHIIET 299 N PF G + + F V P S F+ H+I + Sbjct: 285 NMPFSKDKWASGFNPGGESSGKGKKEFKMEASLDKFHRFDWGVPPASKGDWAFLLHMIAS 344 Query: 300 LHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTK 359 L GR A V P VLF G IR+ ++++ L ++ LP +FY + +L F K Sbjct: 345 LSVNGRIAAVAPHGVLFRGAAEGRIRQKVIEENLLDAVIGLPENLFYGTSIPACILVFKK 404 Query: 360 GTVANPNQDKNCTDDVWVYDLRTN-------MPSFGKRTPFTDEHLQPFERVYGEDPHGL 412 D+ D + EH+ Y Sbjct: 405 NRT---------NTDILFIDASKKDENGNPRYIKASNQNELAPEHIDAIVEAYQ------ 449 Query: 413 SPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKD 472 + + +++ A E+ ++E N N +++ T F E + +I LK + Sbjct: 450 TRTDKDKFAHVATLEEIQENEYNLNIPRYVDT-----FEEEEPIDIQKVQANIDRLKAEI 504 Query: 473 SIDADSLP 480 + + Sbjct: 505 AEAETQMD 512 >UniRef50_A8ZY58 N-6 DNA methylase n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZY58_DESOH Length = 490 Score = 317 bits (811), Expect = 9e-85, Method: Composition-based stats. Identities = 128/470 (27%), Positives = 209/470 (44%), Gaps = 48/470 (10%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPE--------- 52 ++ + CD L GV +NYV +LA L FLK E E + Sbjct: 8 RRQEVQQIVKNACDQLNQEGVDARNYVEQLAWLFFLKAFDEAETRREQEADFDDTAYGRR 67 Query: 53 ---GYRWDDLKSRIG--QEQLQFYR-KMLVHLGEDDKKL----------VQAVFHNVSTT 96 Y W + L+F K+ + L D + + +F NV Sbjct: 68 LSGQYAWSSWARNTDHPDQMLEFVDGKLWIKLTSPDPQKGLGDDLLAQRFRRIFDNVRNY 127 Query: 97 ITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLI 156 +V +D L + + ++YE LL++ A ++ AG+++T R +I Sbjct: 128 CRRGISFARVVQQVDKLHFSSETDVI---VLSEIYEDLLKRVAADSAGYAGEFYTQRHII 184 Query: 157 KTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLE 216 + ++ +++P+P++ V DP GTAGFL EA Y++ L G D + F GLE Sbjct: 185 RAMVEVVQPKPKDKVYDPCFGTAGFLGEAADYIRRNNT----LSGPQLDALQKKTFYGLE 240 Query: 217 LVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENL---PKAHIVATNPPFGSAA 273 + P T L MN +LH IE G + L NTL +N+ + ++ +NPP+G Sbjct: 241 IKPLTYLLGTMNMILHGIE-----GANLELTNTLEIHSQNVGEKARYDVILSNPPYGGKM 295 Query: 274 GTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCH 333 + + F +S + F+QHI+ L GGRA VV+P+ VLF GG +R++L+++ + Sbjct: 296 ASGMQTNFRVRSSATECLFLQHIMANLAKGGRAGVVIPEGVLFRGGPDQKVRKELLEQFN 355 Query: 334 LHTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFG-KRT 391 +HTIL LP G F GVKTNV+FF + +D + T VW +L + R Sbjct: 356 VHTILSLPAGCFLPYTGVKTNVIFFDRP------KDDSGTKSVWFCELTNDGFELKSTRK 409 Query: 392 PFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQH 441 P + L F + + G + T + +++ N+ + Sbjct: 410 PIEGDQLPDFLAKWEKRKAGDNSWTVPIEKIIEQGYDLSAKNPNRKDEYE 459 >UniRef50_B8F3Y0 Type I restriction-modification system methyltransferase subunit n=26 Tax=Bacteria RepID=B8F3Y0_HAEPS Length = 562 Score = 316 bits (810), Expect = 1e-84, Method: Composition-based stats. Identities = 99/518 (19%), Positives = 180/518 (34%), Gaps = 106/518 (20%) Query: 4 NDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETG------------------- 44 N L A LWK D LR + NY + + L+FLK ++ Sbjct: 29 NKLDADLWKAADKLRQ-QLDAANYKHIVLGLIFLKYVSDSFSAQQEIIKQRYTDPTSDFY 87 Query: 45 ---------------------------QEAEYLPEGYRWDDLK----SRIGQEQLQ---- 69 ++P+ RWD++K + IG + Sbjct: 88 LDPTAYSESELADILNAELEERDNYAQDNVFWVPQQARWDEIKVVARANIGDKIWDEKTF 147 Query: 70 -----FYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGA----- 119 + +D+ KL + V +S + + L+ ++ Sbjct: 148 KGIANLIDDAFDAIEQDNPKL-KNVIQRISPYKVDESILLGLIDLFSDTNFTRPTLDGKP 206 Query: 120 -HGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGT 178 ++D G +YE L + A GQYFTP+ ++ II +L+P + DPA G+ Sbjct: 207 ISLAAKDILGHVYEYFLGQFALAEGKKGGQYFTPKSIVTLIIEMLEPYKG-RIYDPAMGS 265 Query: 179 AGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNL 238 GF ++ +R+++ ++ ++ + G E P T +LA MN + IE + Sbjct: 266 GGFFVQTERFIREHQGNVSEV-----------SIFGQEFNPTTWKLAAMNMAIRGIEFDF 314 Query: 239 DHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTN-------ITRTFVHPTSNKQLC 291 G A +T + K V NPPF N + + P N Sbjct: 315 GKGNA----DTFSNPQHRDKKMDFVMANPPFNMKDWWNESLAQDPRWQYGIPPEGNANFA 370 Query: 292 FMQHIIETLHPGGRAAVVVPDNVLFEG-GKGTDIRRDLMDKCHLHTILRLPTGIFYAQGV 350 ++QH+I L P GR A+++ + + +IR++++ + ++ LP+ +F + Sbjct: 371 WLQHMIYHLSPNGRMALLLANGSMSSNTNNEGEIRKNILKADLVEAMIALPSQLFTNTQI 430 Query: 351 KTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGK-RTPFTDEHLQPFERVYGEDP 409 + K K +V D R + FT + + Y Sbjct: 431 PACIWILNKN--------KARKGEVLFIDARQLGYMKDRVLRDFTADDIAKVADTYHSWQ 482 Query: 410 HGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRW 447 + + + A +E D L R+ Sbjct: 483 QSADYQNIPAFCYTASL------DEIAQNDFVLTPGRY 514 >UniRef50_B1IB55 Type I restriction modification enzyme methylase subunit n=56 Tax=Bacteria RepID=B1IB55_STRPI Length = 497 Score = 316 bits (809), Expect = 1e-84, Method: Composition-based stats. Identities = 138/520 (26%), Positives = 226/520 (43%), Gaps = 56/520 (10%) Query: 1 MNNNDLVAKLWKLCDNLR-DGGVSYQNYVNELASLLFLKMCK--ETGQEAE--------- 48 M +L K+ +L + L +G + + +L LLF+K E G+E++ Sbjct: 1 MITGELKNKIDQLWEILWTEGNANPLTNIEQLTYLLFMKDLDSVELGRESDAEFLGIPYE 60 Query: 49 ----YLPEGYRWDDLKSR-IGQEQLQFYRKMLVHL-----GEDDKKLVQAVFHNVSTTIT 98 YRW K+ QE + + + G+ D I Sbjct: 61 GVFPKDKPEYRWSTFKNIGDAQEVYRLMTQEIFPFIKNLKGDTDDTAFSRYMREAIFQIN 120 Query: 99 EPKQITALVSNMD-----SLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153 +P + +S +D LD +S D GD+YE LL K T GQ+ TPR Sbjct: 121 KPATLQKAISILDVFPTRGLDVDFDNDKQSITDIGDIYEYLLSKL--STAGKNGQFRTPR 178 Query: 154 PLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFI 213 +I ++ L++P ++++ DPA G+AGFL+ A RY+K + D + + D + ++ F Sbjct: 179 HIIDMMVELMQPTIKDIISDPAMGSAGFLVSASRYLKRK-KDEWETNTDNINHFHNQMFH 237 Query: 214 GLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAA 273 G + RL MN +LH +E I ++L D E K +V NPPF + Sbjct: 238 GNDTDTTMLRLGAMNMMLHGVE-----NPQISYLDSLSQDNEEADKYTLVLANPPFKGSL 292 Query: 274 GTNITRTFV---HPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTD-IRRDLM 329 N T + T +L F+ + TL PGGRAAV+VPD VLF K IR++++ Sbjct: 293 DYNSTSNDLLATVKTKKTELLFLSLFLRTLKPGGRAAVIVPDGVLFGSSKAHKGIRQEIV 352 Query: 330 DKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSF- 387 + L ++ +P+G+F GV T +L FTK TD VW YD++ + S Sbjct: 353 ENHKLDAVISMPSGVFKPYAGVSTAILIFTK-------TGNGGTDKVWFYDMKADGLSLD 405 Query: 388 GKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRW 447 KR P +D + + H L E + + + VA E K D L+ +++ Sbjct: 406 DKRQPISDNDIPDIIERF----HHLEKEAERQRTDQSFFVPVA---EIKENDYDLSINKY 458 Query: 448 RKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAA 487 ++ E + ++ + + + D + L E + L Sbjct: 459 KEIEYEKVEYEPTE-VILKKINDLEKEIQAGLAELEKLLK 497 >UniRef50_C0QQY6 Type I restriction enzyme M protein (HsdM) n=1 Tax=Persephonella marina EX-H1 RepID=C0QQY6_PERMH Length = 898 Score = 315 bits (808), Expect = 2e-84, Method: Composition-based stats. Identities = 102/562 (18%), Positives = 203/562 (36%), Gaps = 94/562 (16%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETG------QEAEYLPEGY 54 + L LW+ + LR GG+ Y + + ++LF+K + ++ +PEG Sbjct: 3 IKKTQLYNHLWEAANALR-GGMDASQYKDYVLTILFVKYVTDKYKGDPYNEDGFIVPEGG 61 Query: 55 RWDDLKSRIGQEQL-QFYRKMLVHLGEDD------KKLVQAVFHNVSTTITEPKQITALV 107 +DDL G++ + + +L L E++ + + T + ++T L+ Sbjct: 62 SFDDLIEAKGKKNIGERINIVLSKLAEENGLKGVIDIVDFDDDTKLGTGKEKVDRLTKLI 121 Query: 108 SNMDSLDW-YNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQ 166 ++ + ++ D GD+YE ++K A E GQ++TP + + + ++ + Sbjct: 122 GIFENPELNFSRNRSDGDDILGDVYEYFMKKFATEAGKSKGQFYTPAEVSRVMAKIIGVE 181 Query: 167 ----PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTR 222 P + DP G+ L++ + + + G E+ Sbjct: 182 KATSPDQTAYDPTCGSGSLLLKVAD-----------------EAPVKISLYGQEIDINVA 224 Query: 223 RLALMNCLLHD-IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTN----- 276 +A MN +LH + + G + DG +L NPPF + Sbjct: 225 NIARMNMILHGRPDAEIAQGNTLSHPKFKNPDG-SLKTFDFAVANPPFSQKNWMDGVNVK 283 Query: 277 -----ITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDK 331 V P N F+ H I++L G+ A+++P VLF G +IR++L+ K Sbjct: 284 NDQYHRFDDGVPPAKNGDYAFLLHFIKSLKSKGKGAIILPHGVLFRGNAEAEIRKNLIKK 343 Query: 332 CHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRT 391 ++ I+ LP +FY G+ +L K ++ +++ D G + Sbjct: 344 GYIKGIIGLPPNLFYGTGIPAVILVIDK-------KNAQARKGIFIIDASKGYRKDGNKN 396 Query: 392 PFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFS 451 + + + + + + EE + D +L R+ + + Sbjct: 397 RLRERDIHKIVDTF------------VNFKEIPGYSRMVSLEEIEKNDYNLNIPRYIEST 444 Query: 452 REW------------IRTAKSDSLDI---------SWLKDKDS------IDADSLPEPDV 484 + I D ++I + K+ +D D+L E Sbjct: 445 EKEDIQDIYAHLHGGIPKRDIDKIEILNVFNDLKNRLFRKKEEGYYTLNVDIDNLTEIIE 504 Query: 485 LAAEAMGELVQALSELDALMRE 506 A E AL+ + E Sbjct: 505 NAEEVKEFKSHALAVFEKWTDE 526 >UniRef50_B0S355 Type I restriction-modification system DNA methylase n=15 Tax=cellular organisms RepID=B0S355_FINM2 Length = 502 Score = 315 bits (806), Expect = 4e-84, Method: Composition-based stats. Identities = 91/527 (17%), Positives = 185/527 (35%), Gaps = 71/527 (13%) Query: 6 LVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMC-------------------KETG-- 44 ++W L G + Y + L+FL+ + Sbjct: 11 FEKQIWDAACVLW-GHIPAAEYRKVIIGLIFLRYISTAFEQRYKELVEEGDGFEDDRDAY 69 Query: 45 --QEAEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQ 102 + ++P+ RW + + ++ + E + K ++ V + K+ Sbjct: 70 TMENIFFVPKEARWSTIAAAAHSPEIGTVIDSAMRAIETENKNLKNVLPKNYGSPDLDKK 129 Query: 103 ITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHL 162 + V ++ + + S D G YE + + A + G G+++TP ++KT++ + Sbjct: 130 VLGDVVDIFTNNIDMSDTEASEDLLGRTYEYCIAQFAEKEGVGGGEFYTPSSVVKTLVSI 189 Query: 163 LKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTR 222 LKP V D G+ G +++++++++ + + G E P T Sbjct: 190 LKPFENCRVYDCCCGSGGMFVQSEKFLEAHGAKRGAI-----------SVYGQEANPDTW 238 Query: 223 RLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAG-------T 275 ++A MN + I+ + A +T +D KA + NPPF Sbjct: 239 KMAKMNMAIRGIDADFGPYNA----DTFSNDLHPTLKADFILANPPFNYHPWGQQALQDD 294 Query: 276 NITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGT-DIRRDLMDKCHL 334 + + P N ++QH+I L P G+ +V+ + L G IR+ +++ + Sbjct: 295 KRWKYGLPPAGNANYAWIQHMIHHLAPNGKIGLVLANGALSTQTSGEGTIRKKIIEDDLI 354 Query: 335 HTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSF-GKRTPF 393 I+ +PT +FY+ + + F +K K D R K F Sbjct: 355 EGIVAMPTQLFYSVTIPVTLWFISKN--------KKQKGKTLFIDARKMGHMVDRKHRDF 406 Query: 394 TDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSRE 453 +E +Q + +G +G VA E+ D L R+ + Sbjct: 407 DEEDIQKLADTFTAFQNGTLEDVKG-------FCAVASLEDIAKQDYILTPGRYVGIEEQ 459 Query: 454 WIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSEL 500 ++K + L + + E E+ + L + Sbjct: 460 EDDGEP--------FEEKMARLTSELSDMFEKSHELEDEIRRKLGAI 498 >UniRef50_UPI0001C37526 type I restriction-modification system methyltransferase subunit like protein n=2 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37526 Length = 523 Score = 314 bits (805), Expect = 4e-84, Method: Composition-based stats. Identities = 103/489 (21%), Positives = 178/489 (36%), Gaps = 67/489 (13%) Query: 5 DLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQ------------------- 45 + LWK D LR G V Y + + SL FLK + + Sbjct: 12 SMEEALWKSADKLR-GSVEPAEYKHVVLSLFFLKFASDKFEAQRKMIAEKYGDKFVDNIA 70 Query: 46 -----EAEYLPEGYRWDDLKSRIGQEQLQF-YRKMLVHLGEDDKKLVQAVFHNVSTTIT- 98 YLP RW + Q+ + L + + + L A+ N + + Sbjct: 71 FYTKDNVFYLPAESRWSFIMENAKQDDIALKIDTALFTIEKTNPALKGALPDNYYSRLHI 130 Query: 99 EPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKT 158 + ++ +L+ +D ++ D G +YE L K A G G+++TP+ ++ Sbjct: 131 DTSKLASLLDEIDKIN----TDDSENDIIGRIYEYFLGKFALAEGKGKGEFYTPKCIVNL 186 Query: 159 IIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELV 218 I L++P ++ DP G+ G +++ ++V++ + + + + G E Sbjct: 187 IAELIEPYDG-ILYDPCCGSGGMFVQSIKFVEAHSGNKKKV-----------SIYGQEYT 234 Query: 219 PGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNIT 278 T +LA MN + I NL A NT +D KA + NPPF Sbjct: 235 NTTFKLAKMNLAIRGISANLGEMAA----NTFTNDQHKDLKADYIMANPPFNQKEWRAEN 290 Query: 279 R---------TFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLM 329 V PTSN ++ +I+ L G A ++ + L + G IR+ L+ Sbjct: 291 ELVDDPRWNGYEVPPTSNANYGWILNIVSKLSQNGVAGFLLANGALSDDGTELKIRKQLI 350 Query: 330 DKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQD-------KNCTDDVWVYDLRT 382 D + I+ LP +FY + + K A + ++ ++ DLR Sbjct: 351 DNNLVEAIIILPRSLFYTTDISVTLWILNKNKKARDVEKNGETIHYRDREREILFMDLRQ 410 Query: 383 NMPSFGKRT-PFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQH 441 F K+ T+E Y E + E A +E Sbjct: 411 MGSPFEKKYVELTEEDRAKVTATYHAWQQ---KGYEETYQDIPEFCYSASYDEVAEKGFT 467 Query: 442 LATSRWRKF 450 L SR+ +F Sbjct: 468 LVPSRYIEF 476 >UniRef50_A1U632 N-6 DNA methylase n=17 Tax=cellular organisms RepID=A1U632_MARAV Length = 570 Score = 314 bits (805), Expect = 4e-84, Method: Composition-based stats. Identities = 100/536 (18%), Positives = 186/536 (34%), Gaps = 104/536 (19%) Query: 1 MNNND------LVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKE------------ 42 MNN + L KLWK D LR + NY + + L+FLK + Sbjct: 1 MNNTEQQFLKALDDKLWKAADKLRA-NLDAANYKHVVLGLIFLKYVSDAFEERQEELLER 59 Query: 43 ------------------------------------TGQEAEYLPEGYRWDDLKSR---- 62 ++P+ RW LK + Sbjct: 60 FKDQNDDIYYLPPEDYDGHEDYQQALLEELEILDYYREANVFWVPKPARWSTLKEKAVLP 119 Query: 63 -------------IGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSN 109 + + + + E ++ + + +S + ++ L++ Sbjct: 120 VGTVLWQDDAGNDVKLRSVSWLIDNALEEIEKSNAKLKGILNRISQYQLDNDKLLGLINT 179 Query: 110 MDSLDWYN------GAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL 163 + S+D G +YE L + A GQY+TP+ ++ I+ +L Sbjct: 180 FSDTSFTRPVFEGEKLSLHSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEML 239 Query: 164 KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRR 223 +P V DPA G+ GF + +D++++ + + D + + H + G E P T R Sbjct: 240 QPYSG-RVYDPAMGSGGFFVSSDKFIEEHAS---EQHYDAGEQKKHISVYGQESNPTTWR 295 Query: 224 LALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTN------- 276 LA MN + I+ N A +T D +A V NPPF + Sbjct: 296 LAAMNMAIRGIDFNFGKKNA----DTFLDDQHPDLRADFVMANPPFNIKDWWSESLADDV 351 Query: 277 ITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEG-GKGTDIRRDLMDKCHLH 335 + P N +MQH++ L P G A+++ + + +IR+ L+++ + Sbjct: 352 RWKYGTPPKGNANFGWMQHMLHHLAPTGSMALLLANGSMSSNTNNEGEIRKRLVEEDLVE 411 Query: 336 TILRLPTGIFYAQGVKTNVLFFTKGTVA---NPNQDKNCTDDVWVYDLRTNMPSFGK-RT 391 ++ LP +F + + F TK + ++ ++ D R + Sbjct: 412 CMVALPGQLFTNTQIPACIWFLTKDKANGMVRNEKKRDRREEFLFIDARNLGFMRDRVLR 471 Query: 392 PFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRW 447 FT++ + + G + A + A +E K D L R+ Sbjct: 472 DFTNDDVAKIADTFHAWQRGEG------YEDVAGFCKSASLDEIKKHDFVLTPGRY 521 >UniRef50_C2C3E3 Site-specific DNA-methyltransferase, adenine-specific n=12 Tax=Bacilli RepID=C2C3E3_LISGR Length = 531 Score = 313 bits (802), Expect = 1e-83, Method: Composition-based stats. Identities = 111/580 (19%), Positives = 203/580 (35%), Gaps = 114/580 (19%) Query: 3 NNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETG-QEAEYLPEGYRWDDLKS 61 +N+ K+W + + R G + Y + + +LF K E Q E + G W+ + S Sbjct: 4 SNEQQNKMWAMLNQTR-GQIGLTAYKDYIFGILFYKYLSEKATQWLESVLRGESWESIYS 62 Query: 62 RIGQEQLQFYRKMLVH-----------------------------------LGEDDKKLV 86 + L + +K L + + + K Sbjct: 63 QDPARSLDYMKKNLGYAIRPNNFFSDWKKAIEEDQFNIGLMTDTFGHFNQQIAFEAKSDF 122 Query: 87 QAVFHNVSTTITE-----PKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANE 141 + +F + + + + ++S ++ L D D+YE L+ K A Sbjct: 123 EGIFDGMRFDSADLGANAQARASVMISMIEVLSAPEFDLSGGDDAISDIYEYLVAKFATV 182 Query: 142 TKSGAGQYFTPRPLIKTIIHLLKPQPRE----VVQDPAAGTAGFLIEADRYVKSQTNDLD 197 S GQY+TP+ + + +L E + DP G+ L+ Y+K+ Sbjct: 183 LASDMGQYYTPKEISDVMAQILTFGREEAEHFSIYDPTVGSGSLLLTTASYMKNSHK--- 239 Query: 198 DLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN---LDHGGAIR--LGNTLGS 252 + + G E RL+ MN ++H +E N ++H ++ + + Sbjct: 240 ---------RGMIKYFGQEKDATPYRLSRMNLMMHGVEYNDVSINHADTLKSDWPDGVVE 290 Query: 253 DGENLPKAHIVATNPPFGSAA-------GTNITRTFVHPTSNKQLCFMQHIIETLHPGGR 305 +N V NPP+ + V P + F+ H + L GR Sbjct: 291 GKDNPRMFDAVMANPPYSAHWNNKDREDDPRWREYGVAPKTKADYAFLLHCLYHLEDNGR 350 Query: 306 AAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANP 365 A+++P VLF G IR+ L+DK + ++ P +F + VL K V + Sbjct: 351 MAIILPHGVLFRGAAEGRIRKALIDKHQIEAVIGFPDKLFLNTSIPVCVLILRKNRVES- 409 Query: 366 NQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAE 425 DV D + + E + + R E E + Sbjct: 410 --------DVLFIDASKDFEKMKNQKRLRPEDVAKIVDT-------VVHRKEME-----K 449 Query: 426 ETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVL 485 +A +E K D +L R+ + ++++ ID + E Sbjct: 450 YAHIATLDEIKENDYNLNIPRY-----------------VDTFEEEEPID---IVEVSQE 489 Query: 486 AAEAMGELVQALSELDALMRELGASDEADLQRQLLEEAFG 525 + GE+ QA SE +++ EL + E + L+E A G Sbjct: 490 ITKINGEIKQAESEFLSMLDELAVTPET---KDLIEAAKG 526 >UniRef50_A3XVM8 Type I restriction-modification system M subunit n=1 Tax=Vibrio sp. MED222 RepID=A3XVM8_9VIBR Length = 812 Score = 313 bits (802), Expect = 1e-83, Method: Composition-based stats. Identities = 100/491 (20%), Positives = 182/491 (37%), Gaps = 81/491 (16%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA------------- 47 ++ L + LW+ D LR G + +Y + +LFLK + ++ Sbjct: 5 LSLQQLESFLWESTDILR-GSLDAADYRENILGMLFLKRLSDVFEDKKQKVIQHYIDNGR 63 Query: 48 ------------------EYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDD---KKLV 86 ++PE W L + + +E Q + ++ + E + K ++ Sbjct: 64 TKEQAKELARNRSEYVNTFFVPENANWSAL-TNVKEEIGQSLDRSMLAIEEHNSELKNVL 122 Query: 87 QAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGA 146 ++ T ++ Q+ LV + + + D G YE L++ A+ Sbjct: 123 TSIDFGKKTRLSN-AQLRDLVLHFSKCRLLDE-DFECPDILGKAYEYLIKMFADSAGRKG 180 Query: 147 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDF 206 ++TPR ++K ++ LL+P V DP G G L+++ Y+K D Sbjct: 181 SGFYTPREVVKLMVSLLEPSSGMSVYDPTVGAGGMLVQSRNYLKDIGKD----------- 229 Query: 207 QIHRAFIGLELVPGTRRLALMNCLLHDIEG-NLDHGGAIRLGNTLGSDGENLPKAHIVAT 265 ++ + G E+ GT + MN L ++ HG +R N ++ L V + Sbjct: 230 -VNLSLYGQEVNQGTWTICRMNMFLQGESNVDIRHGDTLR--NPKHTEANRLITFDRVIS 286 Query: 266 NPPFGSAAGTNIT---------RTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLF 316 +PPF + + P ++ F+QH + T++ GRA VV+P L Sbjct: 287 HPPFSLKEWGGDELSNDTFGRFKYGIPPRNSGDFAFIQHTLATMNESGRAVVVLPHGPLH 346 Query: 317 EGGK-GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDV 375 GK DIRR +++ + ++ LP GIFY G+ T +L K + + V Sbjct: 347 RAGKSELDIRRGMLEDDVIEAVIGLPAGIFYGTGIPTCLLILNKC------KGRKQRGKV 400 Query: 376 WVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEEN 435 D S E + + YG+ S + + +E Sbjct: 401 LFVDASNGFKSNKWMMELRGEDSEKILKAYGDFESIGS------------FSRIVTVDEI 448 Query: 436 KNTDQHLATSR 446 T R Sbjct: 449 LKDKYCRLTIR 459 >UniRef50_B5EVZ6 Type I restriction-modification system, M subunit n=1 Tax=Vibrio fischeri MJ11 RepID=B5EVZ6_VIBFM Length = 515 Score = 312 bits (799), Expect = 2e-83, Method: Composition-based stats. Identities = 98/541 (18%), Positives = 200/541 (36%), Gaps = 75/541 (13%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQE-------------- 46 + + LW LR G + Y + + LLF+K ++ E Sbjct: 5 VGDKAFFDTLWDSAVALR-GALQPSEYKHPVLGLLFIKYVSDSFTELQVNLKEWVADANH 63 Query: 47 -----------------AEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAV 89 ++PE RWD L Q + V ED+ ++ + Sbjct: 64 DYYGMDINDPDLYEAENVFWVPEEARWDFLVGSAKQTNIAKLLDEAVKAIEDNNSQLKGM 123 Query: 90 -FHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQ 148 + ++ L+ + L +N +S D G YE L K A + AG Sbjct: 124 LYRGFGLLKIPSSKLGELIDLLGKLT-FNSKEHRSADVLGQAYEFFLGKFALAEGASAGA 182 Query: 149 YFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQI 208 ++TP ++ TI+ ++ P + + +PA G+ G ++ ++++++ + D+ Sbjct: 183 FYTPESIVSTIVEVIAPTKGQ-LYEPAIGSGGMVVCSEKFMERNGGERGDI--------- 232 Query: 209 HRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPP 268 + G E T ++A MN + ++ +L A +TL +D +A + NPP Sbjct: 233 --SVYGQEYTHTTWKMAAMNLTIRGLDFDLGKENA----DTLLNDLHKDLRADYIMANPP 286 Query: 269 FGSA-------AGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVL-FEGGK 320 F AG + SN ++QH++ L+ GRA VV+ + + Sbjct: 287 FNQEKWGAAKVAGDVRWKWGQPSDSNANYAWIQHMLYHLNETGRAGVVMANGAMTSTANN 346 Query: 321 GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDL 380 IR+ +++ + ++ LP +F + + + FF K K + D Sbjct: 347 EDAIRKAIIEDDLVECMVALPPKLFINTQIPSCIFFFNKN--------KKRKGETLFIDA 398 Query: 381 RTNMPSFGK-RTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTD 439 R + + F +EH+ Y + ++ A + E+ + Sbjct: 399 RHLGRLESRAQLVFDEEHIMEIANTYHAWAKTDFAEKDSKYVDIAGFCKSGKLEDIEKAG 458 Query: 440 QHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSE 499 L+ R+ + A+ + + S+ +D ++ L E + ++ +L+E Sbjct: 459 FVLSPGRY-------VGAAEVEEDEASYQEDMATLTG-QLSEQIKKSVSLDEQIKASLAE 510 Query: 500 L 500 + Sbjct: 511 V 511 >UniRef50_B4VZI3 N-6 DNA Methylase family n=2 Tax=Bacteria RepID=B4VZI3_9CYAN Length = 513 Score = 312 bits (798), Expect = 3e-83, Method: Composition-based stats. Identities = 133/566 (23%), Positives = 223/566 (39%), Gaps = 107/566 (18%) Query: 1 MNNNDLVAKLWKLCDNLRD----GGVSYQNYVNELASLLFLKMCKETGQEAEYLPE---- 52 M+ L +W+ CD LR GGV YV L+ LLFLK GQE + E Sbjct: 1 MSREQLTNDIWRACDILRRDNNCGGV--MEYVEHLSWLLFLKFLD--GQEDAFEQEAKSA 56 Query: 53 ----------GYRWDDLKSRI-----------------GQEQLQFYRKMLVH-----LGE 80 YRW + ++ + ++F R L+ G Sbjct: 57 NRKYTRVISRQYRWSNWVTKALGKKGGKKGRRTIPAWDDHQLMEFVRGELIPHLASLSGS 116 Query: 81 DDKKLVQAVFHNVSTTITE-PKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNA 139 +++++ +F + + I + P + ++ +D +D N +YE LL++ Sbjct: 117 PEREVIAGIFRDRNVIICDSPDNLKDVLKIVDQIDLTN---PDDIYTVSHIYEDLLKRLG 173 Query: 140 NETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDL 199 +E AG+++TPR +I+ ++ ++ PQ E V DPA GT GFL+EA + + Q D Sbjct: 174 SE-NKMAGEFYTPRSVIRFMVEVIDPQIGETVYDPACGTCGFLLEAFLHTQKQEKTAKD- 231 Query: 200 DGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSD-----G 254 ++ F+G E P L MN +LH + IR NTL D G Sbjct: 232 ----REILQRHTFVGQEKKPLPALLGTMNMVLHGV-----LVPDIRRRNTLAEDIRDGSG 282 Query: 255 ENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHP--GGRAAVVVPD 312 ++ TNPPFG I + F + +L F+QH+++ L P G R +VVP+ Sbjct: 283 LFDETFDVILTNPPFGGKENARIQKNFPVKANATELLFLQHVMKKLKPKQGARCGIVVPE 342 Query: 313 NVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQG-VKTNVLFFTKGTVANPNQDKNC 371 LF GG ++++L+ +L ++ LP G F VK +LFF +G Sbjct: 343 GTLFRGGAFATVKKELLHDFNLFMVVSLPPGTFAPYSDVKAALLFFERG---------EQ 393 Query: 372 TDDVWVYD--LRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEV 429 +V + L ++ F K +DEH +V+ + + + + Sbjct: 394 QKEVLYQEIALPDDLKKFSKVNSISDEHFAEARQVWQQMKDYHLGKANRP--TMTANSWL 451 Query: 430 ADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEA 489 D + + K+ + + LP P + A Sbjct: 452 EDVKGLVKNEYDFTA------------------------KNSIYLKKEKLPHPSEITAIL 487 Query: 490 MG---ELVQALSELDALMRELGASDE 512 + EL L L ++ + SD+ Sbjct: 488 LKDQRELQIRLERLHKMLNDRIKSDD 513 >UniRef50_A8YVB4 Type I restriction-modification system modification subunit n=57 Tax=Firmicutes RepID=A8YVB4_LACH4 Length = 551 Score = 311 bits (797), Expect = 3e-83, Method: Composition-based stats. Identities = 107/581 (18%), Positives = 206/581 (35%), Gaps = 112/581 (19%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKET----------------- 43 + +L + L+ D LR + Y N L ++F K + Sbjct: 7 LTKKELESALFSAADALR-SKMDANEYKNYLLGIIFYKYLSDKMLYHVGEVLEGRRDLSL 65 Query: 44 GQEAEYLPEGYRWDDLK---------------------------SRIGQEQLQFYR---- 72 + + E + +DL+ +R +++ ++ Sbjct: 66 EENQKIYEEKFDTEDLQDDIKTTFSYTISPEHTFTYILNEINGTARTKDGKIKTFQISDL 125 Query: 73 -KMLVHLGEDDKKLVQAVFHNVS--------TTITEPKQITALVSNMDSLDWYNGAHGKS 123 + + +F +V + I ++ + L+ N + Sbjct: 126 ADAFNDIESTKDSDFEGLFADVQLYSPRLGTNAQKQADTIANVIKAIGDLELVNQV--DN 183 Query: 124 RDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPR----EVVQDPAAGTA 179 +D GD YE L+++ A+E+ AG+++TP+ + + + L V DPA G+ Sbjct: 184 KDTLGDAYEYLIKQFASESGKKAGEFYTPQEVSELLTKLTLVDKNYPEEMTVYDPAMGSG 243 Query: 180 GFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLD 239 L++ +Y+K D + + G E+ T LA MN +LH ++ + Sbjct: 244 SLLLKFKKYIKLANGQADKIF-----------YYGQEINMSTYNLARMNMILHGVDSS-- 290 Query: 240 HGGAIRLGNTLGSDGENLPK--AHIVATNPPFGSAAGTNI----TRTF-----VHPTSNK 288 +R G+TL D + K V NPP+ N F + P S Sbjct: 291 -NQELRRGDTLDEDWPPVSKTMFDAVVMNPPYSLKWSANKGFLQDPRFSPYGVLPPKSKA 349 Query: 289 QLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQ 348 F+ H L G A+V+P VLF G IR+ L++ + ++ LP+ +FY+ Sbjct: 350 DYAFLLHGFYHLKNTGTMAIVLPHGVLFRGAAEGKIRKKLLENGSIDAVIGLPSNLFYST 409 Query: 349 GVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGED 408 + T ++ K V D + +E +Q Y + Sbjct: 410 SIPTVIVVLKKDKT---------DRSVMFIDASKGFEKKKNQNELREEDIQKILDTYEKR 460 Query: 409 PHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWL 468 ++ A+ E+ +++ N N +++ T F E K + D L Sbjct: 461 ED------VERYAHLAKFDEIEENDFNLNIPRYVDT-----FVPEPPVDLKKVATD---L 506 Query: 469 KDKDSIDADSLPEPDVLAAEAMGELVQALSELDALMRELGA 509 + + + E + E + + + LDA+++EL A Sbjct: 507 HETNVEIEKNQRELVGMLKELTSDDTEIMDGLDAIIKELEA 547 >UniRef50_Q4A128 Putative type I restriction-modification system methyltransferase subunit n=5 Tax=Bacteria RepID=Q4A128_STAS1 Length = 518 Score = 311 bits (797), Expect = 4e-83, Method: Composition-based stats. Identities = 114/529 (21%), Positives = 190/529 (35%), Gaps = 102/529 (19%) Query: 3 NNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQ--------------EAE 48 +L +LW + ++LR G + + N + L+F + E + E Sbjct: 11 QAELHKRLWSIANDLR-GNMDASEFRNYILGLIFYRFLSEKAETEVAEALSGEDLTYEEA 69 Query: 49 YLPEGYRWD---DLKSRIG--QEQLQFYRKMLVHLGE---DDKKLVQAVFHNVSTTITEP 100 + E YR D +L +G E + M+ + D + LVQA+ V T+ Sbjct: 70 WEDEEYREDLKDELIENVGYYIEPQDLFSSMVTEIENQRFDIEHLVQAI-RKVETSTLGQ 128 Query: 101 KQITALVSNMDSLDWYNGAHGK--------------------------SRDDFGDMYEGL 134 + +D + G D GD YE L Sbjct: 129 NSEEDFIGLFSDMDLSSTRLGNTVKERTALISKVMVNLGDLPFVHSDMEIDMLGDAYEFL 188 Query: 135 LQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREV--VQDPAAGTAGFLIEADRYVKSQ 192 + + A AG+++TP+ + K + ++ ++ V DP G+ L+ + Sbjct: 189 IGRFAANAGKKAGEFYTPQQVSKILAQIVTLGKDKLRNVYDPTCGSGSLLLRVGK----- 243 Query: 193 TNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGS 252 + G E T LA MN LLHD+ I+ +TL + Sbjct: 244 -------------ETTVYRYNGQERNNTTYNLARMNMLLHDV---RFENFDIQNDDTLEN 287 Query: 253 DGENLPKAHIVATNPPFGSAAGT----NITRTF-----VHPTSNKQLCFMQHIIETLHPG 303 K V NPP+ + N F + P S F+QH++ L Sbjct: 288 PAFEGEKFDAVVANPPYSAKWSADSKFNDDERFSNYGKLAPKSKADFAFIQHMVHYLDDE 347 Query: 304 GRAAVVVPDNVLFEGGKGTDIRRDLM-DKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTV 362 G AVV+P VLF G IR+ L+ +K +L ++ LP IFY + T VL F K Sbjct: 348 GTMAVVLPHGVLFRGAAEGVIRKYLIEEKNYLDAVIGLPANIFYGTSIPTCVLVFKKCRE 407 Query: 363 ANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSF 422 A+ DV D + TDE ++ Y + ++S+ Sbjct: 408 AD--------QDVLFIDASNEFEKGKNQNHLTDEQVEKIIATYK------NREAVDKYSY 453 Query: 423 NAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDK 471 A E+ +++ N N +++ T F E D++ + D+ Sbjct: 454 AANLKEIDENDYNLNIPRYVDT-----FEEEEPVDLDKVQQDLNQIDDE 497 >UniRef50_C1ZKX4 Type I restriction-modification system methyltransferase subunit n=2 Tax=Bacteria RepID=C1ZKX4_PLALI Length = 571 Score = 311 bits (797), Expect = 4e-83, Method: Composition-based stats. Identities = 92/500 (18%), Positives = 176/500 (35%), Gaps = 78/500 (15%) Query: 4 NDLVAKLWKLCDNLR-DGGVSYQNYVNELASLLFLKMCKETGQEAE-------------- 48 ++ +LW D LR + + Y + L+FL+ +AE Sbjct: 44 TEIERRLWASADELRANSKLKSSEYSVPVLGLIFLRYADHRFTQAERELNVLFAKKSGSR 103 Query: 49 --------------YLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVS 94 +LP R+ L E + + E + + ++ + Sbjct: 104 RAIGKEDFQAKGVMFLPPESRFSALLELPEGEDIGKAITTAMKAIEKENEELKGILPKTY 163 Query: 95 TTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRP 154 + I E + +L+ N+ S+ D FG +YE L A G++FTP Sbjct: 164 SKI-ENTTLVSLLKNLSSI-----PVDAEGDTFGKIYEYFLGNFARAEGQKGGEFFTPTS 217 Query: 155 LIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIG 214 L+K I+ +++P + DPA G+ G +++ ++K+ N+ + + G Sbjct: 218 LVKLIVEIIQPYHG-RIYDPACGSGGMFVQSADFIKAHHNNP----------AVEISIYG 266 Query: 215 LELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFG---- 270 E V TR+L MN +H + G++ G E++ K V NPPF Sbjct: 267 QERVDETRQLCQMNLAVHGLSGDIRQGNT-----YYEDPHESVGKFDFVMANPPFNVDKV 321 Query: 271 SAAGTNITRTFV---HPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRD 327 F N +++ +L+ GRA V+ ++ +IR+ Sbjct: 322 DKEKLKEDPRFPLGMPRADNANYLWIELFYSSLNATGRAGFVMANSAADARQSEMEIRQK 381 Query: 328 LMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSF 387 L+ + ++ + FY + + F KG + + V D R Sbjct: 382 LLKAHVVDVMIAIGPNFFYTVTLPCTLWFLDKGKSNLSGKGSQRKEQVLFIDARHIFRQV 441 Query: 388 ----GKRTPFTDEHLQPFERVY----------------GEDPHGLSPRTEGEWSFNAEET 427 K +P E++ R+Y G +P + + +++ A Sbjct: 442 DRAHRKFSPKQLEYIANIVRLYRGEQPEFTAGDDLEFPGVEPDLKATFPKLKYADVAGLC 501 Query: 428 EVADSEENKNTDQHLATSRW 447 ++A +E + L R+ Sbjct: 502 KIATLQEIEAQGWSLNPGRY 521 >UniRef50_B7KF58 N-6 DNA methylase n=4 Tax=Bacteria RepID=B7KF58_CYAP7 Length = 509 Score = 310 bits (795), Expect = 6e-83, Method: Composition-based stats. Identities = 133/554 (24%), Positives = 221/554 (39%), Gaps = 99/554 (17%) Query: 1 MNNNDLVAKLWKLCDNLRD----GGVSYQNYVNELASLLFLKMCKE-----------TGQ 45 M+ L +W+ CD LR GG+ Y+ LA LLFLK E + Sbjct: 1 MSKEQLTNDIWRACDILRRDNNCGGI--MEYIEHLAWLLFLKFLDEQEDTFALEAELRNE 58 Query: 46 EAEYLPEG-YRWDDLKSR-----------------IGQEQLQFYRKMLVHL-----GEDD 82 + Y+ EG YRW + ++ + F ++ L+ G + Sbjct: 59 KYHYMIEGEYRWSNWVTKGLGKKKKQSDKRNTPEWDADTLMGFVKEKLIPYLASLSGSPE 118 Query: 83 KKLVQAVFHNVSTTITEP-KQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANE 141 ++++ +F + + + + ++ +D +D+ N + YE LLQ+ +E Sbjct: 119 REVIAGIFGGRTVILCDSVYNLKDVLEIVDRIDFSNSDDIYT---VSHTYENLLQRLGSE 175 Query: 142 TKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDG 201 AG+++TPRP+I+ ++ ++ P+ E V DPA GT GFL+ A Y+K + D Sbjct: 176 -NKMAGEFYTPRPVIRFMVEVIDPKIGETVYDPACGTCGFLVAAYEYMKQWEQTIRD--- 231 Query: 202 DTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGE-NLPKA 260 +D F G E P L MN +LH + I+ NTL D + K Sbjct: 232 --RDILQRHTFFGQEKKPLPALLGTMNMVLHGV-----LVPDIQRKNTLEEDTRTAIKKY 284 Query: 261 HIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLH--PGGRAAVVVPDNVLFEG 318 I+ TNPPFG I + F + +L F++HII+ L R +VVP+ LF Sbjct: 285 DIILTNPPFGGKENKQIQKNFPVSANATELLFLEHIIKKLKTDDNARCGMVVPEGTLFRS 344 Query: 319 GKGTDIRRDLMDKCHLHTILRLPTGIFYAQG-VKTNVLFFTKGTVANPNQDKNCTDDVWV 377 G ++ L++ +L ++ LP G F VK +LFF +G D+V Sbjct: 345 GAFGTVKEWLLNDFNLVMVVSLPPGTFAPYSDVKAALLFFERGKQG---------DEVLY 395 Query: 378 YD--LRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEEN 435 + L + F K P D H + ++ + + + E + +E+ Sbjct: 396 QEVVLPEELKKFSKGNPIDDIHFRQVREIWQQMKAYQQGKGKKPEI--TEFSWFEKTEDL 453 Query: 436 KNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAM---GE 492 LA K+ + + + LPEP VL + + Sbjct: 454 IKRGFDLAA------------------------KNPTTTEREKLPEPSVLLDRIIKNNEK 489 Query: 493 LVQALSELDALMRE 506 L Q L L + E Sbjct: 490 LHQNLLSLKQKLDE 503 >UniRef50_C5S255 Type I restriction-modification system n=2 Tax=Actinobacillus minor RepID=C5S255_9PAST Length = 840 Score = 310 bits (795), Expect = 6e-83, Method: Composition-based stats. Identities = 104/496 (20%), Positives = 183/496 (36%), Gaps = 81/496 (16%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLK 60 MN L A LW ++LR G + Y N + LF K E QE + +++L Sbjct: 1 MNKQQLAATLWASANDLR-GKMDASEYKNYILGFLFYKFLSE-HQENYLVQNEVSFEELD 58 Query: 61 SRIGQ----------EQLQFYRKMLVHLGEDDKKL---------------------VQAV 89 S + Q YR +V++ E+ KL + V Sbjct: 59 SDSIETIKEDLGYFIAQEDLYRTWIVNISENKWKLSHVTDAINHFNENLYDSQKDDFEGV 118 Query: 90 FHNVSTTITE-----PKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKS 144 F +++ T + + +A+ ++ L+ D FG +YE L+ + A + Sbjct: 119 FSDLNLTSEKLGKNLSDKESAVKKLIELLNGIKITDNSEYDVFGYIYEYLIAQFAMASGK 178 Query: 145 GAGQYFTPRPLIKTIIHLLKPQPREV----VQDPAAGTAGFLIEADRYVKSQTNDLDDLD 200 AG+++TP + + + ++ + R+ V DP AG+ L+ V Sbjct: 179 KAGEFYTPHQVSRIMAEIVADELRQKEQCAVYDPTAGSGSLLLTVSEAV----------- 227 Query: 201 GDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEG---NLDHGGAIRLGNTLGS-DGEN 256 + + + + F G E T +A MN L+ ++ L + ++ G +GE+ Sbjct: 228 -NRNEHRDNIQFFGQEENNTTYNIARMNLLMRGVKPANMILRNADTLKSDWPYGEINGED 286 Query: 257 LPKA-HIVATNPPFGSAAGTN-------ITRTFVHPTSNKQLCFMQHIIETLHPGGRAAV 308 P V NPP+ + T P + F+ H + L G A+ Sbjct: 287 TPLFVDCVVANPPYSAKWDTERADKDVRFKEYGTAPATKADYAFLLHSLYHLKSDGIMAI 346 Query: 309 VVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQD 368 V+P VLF G + IR L+ + + I+ LP GIF G+ T V+ K N Sbjct: 347 VLPHGVLFRGNEEEKIRTKLLQRRQIDAIIGLPAGIFTNTGIPTIVMILRKQPKHN---- 402 Query: 369 KNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETE 428 +V D + ++ VY +S A+ TE Sbjct: 403 -----NVLFIDASQGFRKEKNSNVLRERDIKKILDVY------RKREVRAGFSHLADLTE 451 Query: 429 VADSEENKNTDQHLAT 444 + ++ N N +++ Sbjct: 452 IESNQFNLNIPRYITP 467 >UniRef50_C6MIL3 N-6 DNA methylase n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MIL3_9PROT Length = 549 Score = 310 bits (794), Expect = 9e-83, Method: Composition-based stats. Identities = 94/521 (18%), Positives = 174/521 (33%), Gaps = 84/521 (16%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQE-------------- 46 + L +LWK L+ + Y + + L+FLK + +E Sbjct: 7 IKTEPLEKQLWKAACKLQK-NIDAAEYKHVVLGLMFLKYISDAFEELHDRLEKGEGDLVG 65 Query: 47 -------------AEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNV 93 ++P RW L + Q + + + E + ++ V V Sbjct: 66 ADPEDKDEYRAENVFFVPAESRWPHLVAHARQPDIGTHVDAAMDAIEKENPSLKGVLPKV 125 Query: 94 STTIT-EPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTP 152 +P + L+ + ++ A +S+D G ++E L + A GQ++TP Sbjct: 126 YARQNLDPTSLGELIDLIGNIAL-GDAKARSQDVLGHVFEYFLGEFALAEGKQGGQFYTP 184 Query: 153 RPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAF 212 R +++ ++++L+P V DP G+ G ++++++V+ +DD+ + Sbjct: 185 RSIVELLVNMLEPYQG-RVFDPCCGSGGMFVQSEKFVEEHQGRIDDI-----------SI 232 Query: 213 IGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSA 272 G E T RLA MN + I+ + + +D KA + NPPF + Sbjct: 233 YGQESNQTTWRLAKMNLAIRGIDSSQVKWN---NEGSFLNDAHKDLKADFIIANPPFNVS 289 Query: 273 AGTN-------ITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGT-DI 324 + + P N ++QH I L P G A VV+ L G DI Sbjct: 290 DWSGEQLRGDARWQYGTPPPGNANFAWLQHFIYHLSPTGIAGVVLAKGALTSKTSGEGDI 349 Query: 325 RRDLM-DKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTV--------------------- 362 R+ L+ D + I+ LP +F + + F + Sbjct: 350 RKRLITDGNLIDCIVNLPAKLFLNTQIPAALWFLNRNRAGMDIGGHAKTIVGANNHLPLQ 409 Query: 363 -----ANPNQDKNCTDDVWVYDLRTNMPSFGKR-TPFTDEHLQPFERVYGEDPHGLSPRT 416 P T ++ D R +R + + +Q Y + Sbjct: 410 NPPQQNPPQYHHPRTHEILFIDARNLGHLINRRTKELSHDDIQQIANTYHAWRNPAVIPA 469 Query: 417 EG---EWSFNAEETEVADSEENKNTDQHLATSRWRKFSREW 454 + + E D L R+ E Sbjct: 470 QTGIQPYEDIKGFCASVPVERVAELDYVLTPGRYVGLPDEE 510 >UniRef50_D1XRZ6 N-6 DNA methylase n=1 Tax=Streptomyces sp. ACTE RepID=D1XRZ6_9ACTO Length = 886 Score = 310 bits (793), Expect = 1e-82, Method: Composition-based stats. Identities = 98/509 (19%), Positives = 181/509 (35%), Gaps = 91/509 (17%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKE------------------ 42 + L L+ D LR G + Y + + LLFLK + Sbjct: 4 LTLAQLERHLFAAADILR-GTMDASEYKDYIFGLLFLKRANDEFEAARERIKEQAKRDWG 62 Query: 43 ----------------TGQEAEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLV 86 ++ ++PE RW ++ S + + + + + L E + + Sbjct: 63 FDGEELDAFLEQEAPYRERDVLFVPEKARWHEI-SGVTRNINESVLRPALQLLEGQNEKL 121 Query: 87 QAVFHNVSTT------------ITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGL 134 +F ++ K++ L+++ + + D G YE L Sbjct: 122 TGLFDHLDFNRIGGSGAAAGTATLADKRLELLIAHFGRVRLRTD-DFEFPDLIGAAYEYL 180 Query: 135 LQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTN 194 +++ A+ G+++TPR +++ ++ LL P + DP G+ G LI A YV+ Sbjct: 181 IKEFADSAGRKGGEFYTPRAVVRMMVELLAPTQGMRIYDPCVGSGGMLIHAAEYVEEHGG 240 Query: 195 DLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI-EGNLDHGGAI-RLGNTLGS 252 D D+ F G + G+ ++ MN +LH + +L G + R + S Sbjct: 241 DTSDMF-----------FAGQDANSGSWIMSTMNMVLHGVRRFDLTTGDTLARPTHIPTS 289 Query: 253 DGENLPKAHIVATNPPFGSAA-----GTNITRTFVHPTS---NKQLCFMQHIIETLHPGG 304 D + + V +NPPF RT+ TS L F+QH++ G Sbjct: 290 DAD---RFDGVLSNPPFSMDYTATDLAHRTERTYYGLTSERGKADLMFLQHMLWETKKEG 346 Query: 305 RAAV---VVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTK-- 359 R + V+P VLF GG IR L+D+ + ++ L +FY G+ +L Sbjct: 347 RGGMVITVMPHGVLFRGGGEQQIRTKLLDEDAVEAVIGLAPNLFYGTGIPACILVLRPPG 406 Query: 360 -GTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEG 418 ++ V + + + EH + + Sbjct: 407 CKGRDRSEREPERAGKVLFINADREFHAERAQNVLLPEHAEKITTTF------------R 454 Query: 419 EWSFNAEETEVADSEENKNTDQHLATSRW 447 ++ + V EE D +L R+ Sbjct: 455 TFAEVPGFSRVVTREELAENDDNLNIRRY 483 >UniRef50_C7TL46 Type I restriction-modification system, M subunit n=17 Tax=Bacteria RepID=C7TL46_LACRL Length = 549 Score = 309 bits (792), Expect = 2e-82, Method: Composition-based stats. Identities = 107/573 (18%), Positives = 211/573 (36%), Gaps = 117/573 (20%) Query: 4 NDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKE--------------------- 42 ++ ++LW + + LR G + + N + +F + E Sbjct: 8 QEITSQLWAMANELR-GNMDASEFRNYILGFMFYRYLSEHQERYLQETNLFEPEAGQTWN 66 Query: 43 -TGQEAEYLPE-------------------GYRWDDLKSRIGQEQL--QFYRKMLVHLGE 80 +E PE W L ++ +++ Y+ + + Sbjct: 67 DAFREVASDPESRKEYLEDISSELGYAIAPEQTWASLVQKVNDDKIVPSDYQDLFDDFNK 126 Query: 81 DD------KKLVQAVFHNVS--------TTITEPKQITALVSNMDSLDWYNGAHGKSRDD 126 + + + +F +++ +T K + +V +D ++ + + RD Sbjct: 127 NAALNPNSEADFRGIFADINLGDSRLGSSTTARAKALNGVVRLVDQFEYNDK---QGRDI 183 Query: 127 FGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL-----KPQPREVVQDPAAGTAGF 181 GD+YE L+ + A + AG+++TP + K + L+ K Q V DP G+ Sbjct: 184 LGDVYEYLIAQFAGNSGKKAGEFYTPHQVSKVLAKLVALGVQKDQEIFTVYDPTMGSGSL 243 Query: 182 LIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHG 241 L+ + + + F G EL T LA MN ++H++ Sbjct: 244 LLTVRDELPATVKAV--------------MFHGQELNTTTFNLARMNLMMHNVP---YTN 286 Query: 242 GAIRLGNTLGSDG--------ENLPKAHIVATNPPFGSAAGTNITR----TFVH-----P 284 ++R +TL D ++ V NPP+ + + F P Sbjct: 287 MSLRNADTLEDDWPDGVVGGVDSPRSFDAVVANPPYSIHWDNSENKLKDPRFKPFGALAP 346 Query: 285 TSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGI 344 S F++H + L+ G A+V+P VLF G IR+ +++K +L ++ +P G+ Sbjct: 347 KSKADFAFVEHGLYHLNDTGTMAIVLPHGVLFRGAAEGKIRKAIIEKNYLDAVIGMPAGL 406 Query: 345 FYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERV 404 F++ G+ T VL F K D++ D N + D + Sbjct: 407 FFSTGIPTVVLVFKKNRT---------NRDIFFIDASNNFEKGKNQNILRDSDIDKIIEA 457 Query: 405 YGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFS--REWIRTAKSDS 462 Y + +++ AE E+ ++E N N +++ T+ K + + K Sbjct: 458 YSKRED------VDKYAHKAELDEIVENEYNLNIPRYVDTTEPEKPIDVVQVVADIKETD 511 Query: 463 LDISWLKDKDSIDADSLPEPDVLAAEAMGELVQ 495 I+ L + + D D L + AA+ + L + Sbjct: 512 KKIAKLSSELAKDIDDLVANNDEAAKQLAALKE 544 >UniRef50_C3PKU9 Type I restriction enzyme M protein n=8 Tax=Bacteria RepID=C3PKU9_CORA7 Length = 590 Score = 309 bits (791), Expect = 2e-82, Method: Composition-based stats. Identities = 124/544 (22%), Positives = 219/544 (40%), Gaps = 78/544 (14%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQ-NYVNELASLLFLKMCKETGQEAEYL--------- 50 M L + ++ D GG+S + + + LLF+K E + + Sbjct: 67 MITGALKNNVDRIWDTFWSGGISNPVSVIEQFTYLLFIKDLDERQVQIDKRRALGDPTAT 126 Query: 51 -------PEGYRWDDLKSR--IGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPK 101 + RW +L I + + K+ + E Q N S I Sbjct: 127 EDIFDASQQDLRWRNLIEDRDIARRKATIINKVFPFIKEMGGTGFQEHMANASFEIESEA 186 Query: 102 QITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIH 161 ++ ++ +D L H ++D GD+YE +L K + GQ+ T +I+ ++ Sbjct: 187 TLSRVMELIDQL------HFSNKDMKGDLYEYMLDKLSTS--GTNGQFRTTSHIIELLVA 238 Query: 162 LLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGT 221 L++P P++ + DPA GTAGFL+ A+ ++ + + D + DT+ + G + Sbjct: 239 LMEPTPQQRIIDPACGTAGFLVAANDWI-AHHHRADLFNKDTRTTFTNEGLTGFDFDKTM 297 Query: 222 RRLALMNCLLHDI-EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGT---NI 277 R+A MN +H E N+ + +++ T + +V NPPF + + Sbjct: 298 VRIAAMNMFMHGFEEPNISYRDSLQQLPTTFDEA-----FDLVLANPPFAGSLDKDAVDP 352 Query: 278 TRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKG-TDIRRDLMDKCHLHT 336 V ++ F+ ++ L PGGRAAV+VP+ VLF K +R+ L++ L Sbjct: 353 KLKSVTTAKKTEILFVHRFLQLLKPGGRAAVIVPEGVLFGSTKAHKALRKTLVEDQRLDA 412 Query: 337 ILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSF-GKRTPFT 394 +++LP+G+F GV T VL FT+ D TD+VW YD+ + S KRTP Sbjct: 413 VIKLPSGVFKPYSGVSTAVLCFTR-------TDSGGTDEVWFYDVTADGYSLDDKRTPLL 465 Query: 395 D---------EHLQPFER-VYGEDPHGLSPRTE--------------------GEWSFNA 424 D H+Q +DP ++ E Sbjct: 466 DAPLLGPSPASHIQDLSDPALADDPTPVTLTDEQLKLNNLPDVVARWHSRTTDERERART 525 Query: 425 EETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDV 484 + + EE D L+ +R+++ E T + I+ +++ D L Sbjct: 526 DYSFTVPKEEIAQADYDLSMNRYKEIVLEVEETRDPMDI-IAEIEELDRDITQGLANLKT 584 Query: 485 LAAE 488 + +E Sbjct: 585 MLSE 588 >UniRef50_A3CUH5 N-6 DNA methylase n=4 Tax=cellular organisms RepID=A3CUH5_METMJ Length = 505 Score = 309 bits (791), Expect = 2e-82, Method: Composition-based stats. Identities = 122/488 (25%), Positives = 206/488 (42%), Gaps = 68/488 (13%) Query: 4 NDLVAKLWKLCDNLRDGGVSYQ-NYVNELASLLFLKMCKETG------QEAEYLP----- 51 +DL +K+ L D GG+S + +++ L+F+K ++ A +P Sbjct: 5 SDLKSKIDTLWDRFWSGGMSNPLQSIEQMSYLIFMKRLEDMDGVEQNRARARGVPYTSVF 64 Query: 52 ---EGYRWDDLKSRIGQEQLQFYRKMLVHLGED----DKKLVQAVFHNVSTTITEPKQIT 104 E RW K ++ L R + + +K L + I +P + Sbjct: 65 EEHEECRWSSWKHYPAEQMLVHVRDKVFPFIQSLHNGEKTLFAQQMRDAVFMIPKPSLLQ 124 Query: 105 ALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLK 164 V+ +D ++ ++RD GD+YE LL + T GQ+ TPR +I+ I+ L+ Sbjct: 125 EAVALIDEMN----ITAQNRDTQGDIYEYLLSQL--STAGKNGQFRTPRHIIRMIVELVD 178 Query: 165 PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQ-----------------DFQ 207 P + + DPA GTAGFLI + ++ + D L+ D + + Sbjct: 179 PDITDRICDPACGTAGFLINSYEHIIRKYTSPDLLEVDDEGEYHNLIGDNITDQKHWEKL 238 Query: 208 IHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNP 267 F G + R++LMN +LH I+ I L +TL + +V NP Sbjct: 239 WSDTFYGFDFDSTMTRISLMNLMLHGIKA-----PHIELKDTLSKRYTEEERYTVVLANP 293 Query: 268 PF-GSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGG-KGTDIR 325 PF GS ++I + T+ +L ++ +I+ L GG+ V+VPD VLF ++R Sbjct: 294 PFKGSIDKSDINDSLSLGTTKTELLLVERMIQLLTIGGKCGVIVPDGVLFGSSRAHKELR 353 Query: 326 RDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNM 384 R L+++ L I+ +P+GIF GV T VL F KG T VW YD+ + Sbjct: 354 RMLLEENQLEGIVSMPSGIFKPYAGVSTAVLIFVKG---------GKTGKVWFYDMEADG 404 Query: 385 PSFGKRTPFTD--EHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHL 442 S + F D + + E R + + + EE + + L Sbjct: 405 YSLDDKRTFIDGKGDIPDIIERFRE-------RRDTNPTDRKAKCFYVPVEEIQANNYDL 457 Query: 443 ATSRWRKF 450 + SR+++ Sbjct: 458 SISRYKEI 465 >UniRef50_C4Z2E8 Type I restriction enzyme M protein n=4 Tax=Firmicutes RepID=C4Z2E8_EUBE2 Length = 892 Score = 308 bits (789), Expect = 4e-82, Method: Composition-based stats. Identities = 124/582 (21%), Positives = 215/582 (36%), Gaps = 96/582 (16%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQ--------------- 45 + L A LW CD LR GG+ Y + + +LLF+K + + Sbjct: 3 VKKTQLYASLWASCDKLR-GGMDSSEYKDYILTLLFMKYVTDKFKNKGAYEDIKVFDKAH 61 Query: 46 EAEYLPE---GYRWDDLKSRIGQEQL-QFYRKMLVHLGEDD---KKLVQAVFHNVSTTIT 98 + + PE G +DD + G++ + + K++ L +++ K ++ N + Sbjct: 62 DKDPDPEKRTGCSFDDFIALKGKKNIGEGMDKIIARLADENTDLKGVIDIAHFNDEKKLG 121 Query: 99 EPK----QITALVSNMDSLDW-YNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153 K ++T L+S + ++ + D GD YE L++K A E+ GQ++TP Sbjct: 122 SGKEMVDKLTDLISIFQRPELDFSRNKAEGDDIIGDAYEYLMRKFATESGKSKGQFYTPA 181 Query: 154 PLIKTIIHLLKP----QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIH 209 + + + +++ V DPA G+ LI A Sbjct: 182 EVSRILANVVGISHCTDASATVCDPACGSGSLLIRAIDAA-----------------PFP 224 Query: 210 RAFIGLELVPGTRRLALMNCLLHDI-EGNLDHGGAIRLGNTLG-SDGENLPKAHIVATNP 267 G E T LA MN +LH E + G + SD L + + NP Sbjct: 225 IMGYGQEKESTTAGLAKMNAVLHRKAEIIIKSGNTFSNPQYMDKSDNSVLERFDYIVANP 284 Query: 268 PFGSAAGTN-----ITRTF-----VHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFE 317 PF + F + P N ++ HI++TL G+AAV++P VLF Sbjct: 285 PFSMKNWRDGIAGKEYGRFEGYGDMPPEKNGDYAWLMHILKTLKSNGKAAVILPHGVLFR 344 Query: 318 GGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWV 377 G IR ++ K + I+ LP +FY G+ VL K AN +++ Sbjct: 345 GNAEATIRETIIKKHWIKGIISLPANLFYGTGIAACVLVIDKEGAANRQG-------IFM 397 Query: 378 YDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKN 437 D G + + + + E V + E K Sbjct: 398 IDASRGYVKDGNKNRLRERDIYRIITTFNEQITTDPKYA----------RFVPNDEIEKK 447 Query: 438 TDQHLATSRWRKFSREWIRTAKSDSL-DISWLKDKD--SIDADSLPEPDVLAAEAMGELV 494 + +L +R+ I + + + DI +ID D L + + EL+ Sbjct: 448 NEYNLNITRY-------IDSTDPEDIQDIYAHIHGGIPAIDIDGLSKYWKVFPSLKSELL 500 Query: 495 QALSEL--------DALMRELGASDEADLQRQLLEEAFGGVK 528 A+SE +++ + + + E + L+EAF K Sbjct: 501 SAISEKYYSLNVEHESIRQTIYKNTEFSKYGEKLDEAFAAWK 542 >UniRef50_Q0AUQ5 Type I restriction-modification system, M subunit n=7 Tax=Bacteria RepID=Q0AUQ5_SYNWW Length = 891 Score = 308 bits (788), Expect = 5e-82, Method: Composition-based stats. Identities = 96/505 (19%), Positives = 178/505 (35%), Gaps = 89/505 (17%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQ--------------- 45 + + L L K D LR G + + + +LF+K + Sbjct: 6 ITLSQLEHFLLKAADILR-GKMDASEFKEFIFGMLFIKRLSDEFDLKRQKLIKKDFAHLK 64 Query: 46 -----------------EAEYLPEGYRW-DDLKSRIGQ----------EQLQFYRKMLVH 77 E ++P RW + G + K + Sbjct: 65 DQPDLIHELLEDKTSYGETFFVPVRARWHESWVDENGDTVPALKDLKYDIGNMLNKAIAA 124 Query: 78 LGEDDKKLVQAVFHNVSTTITEPKQI------TALVSNMDSLDWYNGAHGKS-RDDFGDM 130 + E++ L + +N+ + K L+ + + + D G Sbjct: 125 IEEENDALAGVLKNNIDFNAVKGKTKIPDQKWKDLIDHFNQPQFVLVNDNFEFPDLLGAA 184 Query: 131 YEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVK 190 YE L++ A+ G+++TP +++ ++ L KP+ + DP G+ GFLI++ +YV+ Sbjct: 185 YEYLIKYFADSAGKKGGEFYTPAEVVRLLVQLTKPEAGNTIYDPTVGSGGFLIQSYQYVE 244 Query: 191 SQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI-EGNLDHGGAIRLGNT 249 Q D +DL A G + + MN +LH+I +++G + + Sbjct: 245 EQGQDPNDL-----------ALFGQDSNGTVWSICNMNMILHNITRFTIENGDTLE--DP 291 Query: 250 LGSDGENLPKAHIVATNPPFGS-------AAGTNITRTFVHPTSNKQLCFMQHIIETLHP 302 L D + V NPPF L F+QH++ +L P Sbjct: 292 LILDKGKIRTFERVLANPPFSQNYSRANMKFSNRFWEWCPETGKKADLMFVQHMLASLKP 351 Query: 303 GGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTV 362 G A ++P VLF GGK IR L++ + I+ LP G+FY G+ +L K Sbjct: 352 DGHMATIMPHGVLFRGGKEKLIREILINDDVIEAIISLPPGLFYGTGIPACILVCNKSKP 411 Query: 363 ANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSF 422 + + V + + E ++ + V+ + ++S Sbjct: 412 DSLK------NKVLFINADREYAEGKAQNKLRPEDIEKIDFVF------TNKLEIPKYSR 459 Query: 423 NAEETEVADSEENKNTDQHLATSRW 447 + E+ + D +L R+ Sbjct: 460 LVTKEEIVE-----PHDYNLNIRRY 479 >UniRef50_C6A4W7 Type I restriction-modification system methyltransferase subunit n=1 Tax=Thermococcus sibiricus MM 739 RepID=C6A4W7_THESM Length = 498 Score = 307 bits (787), Expect = 6e-82, Method: Composition-based stats. Identities = 128/526 (24%), Positives = 231/526 (43%), Gaps = 66/526 (12%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA------------E 48 M L +K+ + + +R G++ +YV +L+ +LFLK+ + +E Sbjct: 1 MERQTLASKIEHIYEIMRAEGLTILDYVEQLSWMLFLKILSDREEERKLEAEVKGEKYVP 60 Query: 49 YLPEGYRWDDLKSRIGQEQLQFYRKMLVHL---------------GEDDKKLVQAVFHNV 93 + E Y + + R G + L+ + + G D+ + +F NV Sbjct: 61 IIKEEYLFHNWPKRFGVDSLKKVKDVKTFYDFITNELWPYLSSLGGTDELNKIGEIFSNV 120 Query: 94 STTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153 + + +P + + N++ + + +YE L E AG+Y+TPR Sbjct: 121 TVKVHDPHNLLEIFQNIEDIH----KDDEDTHIMSQLYEETLMLMGRE-GGAAGEYYTPR 175 Query: 154 PLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFI 213 P+++ ++ ++ P+ + V DP G+ GFL+EA ++ Q +DL ++ +AF Sbjct: 176 PIVRFMVKVVDPRIGQTVFDPFCGSGGFLVEAYNHMYEQAKTAEDL------RKLDKAFY 229 Query: 214 GLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAA 273 G EL +A MN LLH++ L L + GE ++ TNPPFG Sbjct: 230 GQELKTQAYLIANMNTLLHNVNAKLVKTDTFSED--LHNPGEL---YDVILTNPPFGGKI 284 Query: 274 GTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGT-DIRRDLMDKC 332 + + + T + +L +QH+++ PGG+ +V+PD VL K +R++L++K Sbjct: 285 KESNLQNLIVKTRSTELAALQHVMKKAKPGGKVGIVLPDGVLSNVTKAYVKVRKELLEKN 344 Query: 333 HLHTILRLPTGIFYA------QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDL-RTNMP 385 ++ I+ LP G+F G KT++LFF +G T +VW Y+L N Sbjct: 345 NVFAIVSLPQGVFANISPKGGSGPKTSLLFFERGKP---------TREVWYYELIPPNGK 395 Query: 386 SFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNA--EETEVADSEENKNTDQHLA 443 ++ + P DE L + + L E EW A E + V EE K D L+ Sbjct: 396 NYTRANPIKDEDLSDALKKFEAWKKYLETDDE-EWKKKALSENSWVVSVEEIKEMDYDLS 454 Query: 444 TSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEA 489 R +R+ + + I+ L++K+ ++ L E + E Sbjct: 455 A---RNPNRKLMIEYPAPEKIIAGLEEKERKISELLGEIKSILGEK 497 >UniRef50_B3CDF6 Putative uncharacterized protein n=1 Tax=Bacteroides intestinalis DSM 17393 RepID=B3CDF6_9BACE Length = 498 Score = 307 bits (785), Expect = 9e-82, Method: Composition-based stats. Identities = 116/515 (22%), Positives = 210/515 (40%), Gaps = 69/515 (13%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVS-YQNYVNELASLLFLKMCKETGQEAE----------- 48 M D+ K+ + + G + ++ LLF+KM + +E E Sbjct: 1 MITGDIKQKVDDVWQTFWNNGFTQPSAIFEQITYLLFMKMLDDKQREKEAIANLTGDVLL 60 Query: 49 --YLPEGY---------------RWDDLKSRIGQEQLQFYRK----MLVHLGEDDKKLVQ 87 PEG RW K + L R L H+G++ + Sbjct: 61 NPTFPEGVWRNPSTDKDVPYHEMRWHVFKEMEPTKMLDRVRNDVFIFLRHVGKEGSAYRK 120 Query: 88 AVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAG 147 A + IT + ++ ++ +++++ D GD+YE +L A G Sbjct: 121 A-MEDTVFQITNARLLSRVIESIENI------TSDGADMMGDVYEYMLGIMAAS--GTNG 171 Query: 148 QYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQ 207 Q+ TPR +I+ ++ L++P + + DPA G+AGF++EA +++ +D D L+ D Sbjct: 172 QFRTPRHIIRMMVELMRPTLNDTICDPAMGSAGFIMEAAKFITEHQSD-DLLNIGEGDRF 230 Query: 208 IHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNP 267 F G + R+ MN +LHD++ + N+L + + + + NP Sbjct: 231 RKEIFHGSDSDASMLRIGCMNMMLHDVD-----EPNLYYRNSLSDENNDTNRYTLCLANP 285 Query: 268 PFGSAAGTNITRTFVH---PTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTD- 323 PF + T+ + T +L F+ ++ L GGR A +VPD VL + Sbjct: 286 PFAGSLDTDDIAHTLKAAVKTKKTELLFLALMMRMLQSGGRCASIVPDTVLTGDAQAYKT 345 Query: 324 IRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRT 382 IR L+DK + ++ +P+G+F GV T ++ FTK TD VW YD+R Sbjct: 346 IRSALVDKHCMQAVITMPSGVFQPYSGVSTAIIIFTKTGT-------GGTDKVWFYDMRA 398 Query: 383 NMPSFGKRTPFTDE--HLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQ 440 + S + E + + + + R+ E SF ++E + Sbjct: 399 DGFSLTTQRTPQPEQNDIPDIISRF-HNLEAETDRSRKEQSF------FVTADEIRANGY 451 Query: 441 HLATSRWRKFSREWIRTAKSDSLDISWLKDKDSID 475 L+ R+ + RE I +++ + + +ID Sbjct: 452 DLSYKRYHEVEREVIEYEAPETIIARMEERQKAID 486 >UniRef50_Q5M500 Type I restriction-modification system methyltransferase subunit n=23 Tax=Firmicutes RepID=Q5M500_STRT2 Length = 534 Score = 306 bits (784), Expect = 1e-81, Method: Composition-based stats. Identities = 104/573 (18%), Positives = 191/573 (33%), Gaps = 112/573 (19%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKET---------GQEAEYLPE 52 + L LW D LR + +Y + L ++F K + +E E L E Sbjct: 7 TSQSLYQALWNSADVLR-SKMDANDYKSYLLGMVFYKYLSDKMLFFVAETMEEETESLDE 65 Query: 53 G---YRWDDLKSRIGQEQLQFYRKML------------------------------VHLG 79 YR ++ L + Sbjct: 66 ALAVYRKYYEDEETHEDLLAVITDEMSYAIHPDLTFTALVERVNDGSFQLEDLAQGFRDI 125 Query: 80 EDDKKLVQAVFHNVS--------TTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMY 131 E +L + +F ++ T + + + A++ + LD G + D GD Y Sbjct: 126 EQSDELYENLFEDIDLYSKKLGATPQKQNQTVAAVMKELAVLD----VAGHAGDMLGDAY 181 Query: 132 EGLLQKNANETKSGAGQYFTPRPLIKTIIHLL----KPQPREVVQDPAAGTAGFLIEADR 187 E L+ + A ++ AG+++TP+P+ K + + + + + D G+ L+ A R Sbjct: 182 EYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKR 241 Query: 188 YVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLG 247 Y + + G EL T LA MN +LH + + Sbjct: 242 YSRQ---------------PQTVVYFGQELNTSTYNLARMNMILHGVP---IENQFLHNA 283 Query: 248 NTLGSDGENLP--KAHIVATNPPFGSAAGTN----ITRTFVH-----PTSNKQLCFMQHI 296 +TL D V NPP+ + + F P S F+ H Sbjct: 284 DTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHG 343 Query: 297 IETLH-PGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVL 355 L G A+V+P VLF G IR+ L+++ + T++ LP IF+ + T V+ Sbjct: 344 YYHLKQDNGVMAIVLPHGVLFRGNAEGTIRKALLEEGAIDTVIGLPANIFFNTSIPTTVI 403 Query: 356 FFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPR 415 K DV+ D + TD H++ Y S Sbjct: 404 ILKKNRT---------NRDVYFIDASKEFDKGKNQNIMTDAHIEKILNAYK------SRE 448 Query: 416 TEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSID 475 +++ A E+ +++ N N +++ T + + ++ + ++ Sbjct: 449 DIDKFAHLASFEEIVENDYNLNIPRYVDTF--------EEEEVEPLTEIVAKINQTNATI 500 Query: 476 ADSLPEPDVLAAEAMGELVQALSELDALMRELG 508 + + G +A EL A ++ Sbjct: 501 ESQTASLLDMLGQLHGTTPEADEELKAFVKAFK 533 >UniRef50_B7GLJ2 Type I restriction-modification system methyltransferase subunit n=4 Tax=Bacteria RepID=B7GLJ2_ANOFW Length = 515 Score = 306 bits (783), Expect = 2e-81, Method: Composition-based stats. Identities = 105/543 (19%), Positives = 197/543 (36%), Gaps = 83/543 (15%) Query: 5 DLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYL-------------- 50 D L++ + +R G V+ +Y + + L+FL+ ++ Sbjct: 8 DFQKDLFEAANKMR-GSVAPADYKHYVLPLIFLRYLSNKYEQRRKELEQIVKDPSSDWYT 66 Query: 51 ------------------------PEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLV 86 PE W + Q ++ + E++ + Sbjct: 67 EDDEMRQIIITDPDQYKAENVFVVPEEASWSYIMKNAKQPNIKEILDNAMKRLEEENPEL 126 Query: 87 QAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGA 146 + + + P + A + + S D ++ +S D G YE + A + Sbjct: 127 EGILPRIYQGSNLPAENVAGLIEIFSRDVFSANTHESVDILGRTYEYFISSFAASEGNRG 186 Query: 147 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDF 206 G++FTP ++K ++ +L+P+ +V DPA G+ G I+++ Y ++ Sbjct: 187 GEFFTPSSIVKLLVAMLEPKSG-IVFDPACGSGGMFIQSEEYAPNKHA------------ 233 Query: 207 QIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATN 266 +F G E V T RL MN LLH I IRLG++L +D KA + N Sbjct: 234 ---LSFYGQENVVTTVRLGKMNVLLHGINAE------IRLGDSLLNDQFPDLKADYIIAN 284 Query: 267 PPFGSAAG-------TNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEG- 318 PPF + SN +MQH + L+ G A V+ + + Sbjct: 285 PPFNQKDWGADRLSKNDPRLIGPVTNSNANYMWMQHFLYHLNDTGTAGFVMANGAMTTNV 344 Query: 319 GKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVY 378 + ++R+ L+D+ ++ I++LP +F+ G+ + F +K N + +++ Sbjct: 345 KEEKEVRQKLVDEGYIDCIVQLPEKLFFTTGIPCCLFFLSKNRDG-KNGYRARKNEILFI 403 Query: 379 DLRTNMPSF-GKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKN 437 D R K+ + E + VY H + +VA EE + Sbjct: 404 DARKMGTLVSRKQKALSKEEIDKIAAVY----HAYKYEEAEGYEDVTGFCKVATIEEVQA 459 Query: 438 TDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQAL 497 D L + + T SD D + + + L E + ++ + L Sbjct: 460 NDYKLTPGIY-------VGTEVSDEDDTPFEEKMAELTQR-LLEQFEESNRLQEKIKRDL 511 Query: 498 SEL 500 L Sbjct: 512 EGL 514 >UniRef50_D1VRI9 PutatIve type i restriction enzyme hindviip m protein n=2 Tax=Firmicutes RepID=D1VRI9_9FIRM Length = 510 Score = 305 bits (782), Expect = 2e-81, Method: Composition-based stats. Identities = 88/490 (17%), Positives = 180/490 (36%), Gaps = 73/490 (14%) Query: 6 LVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKET---------------------- 43 ++W L G + Y + L+FL+ Sbjct: 11 FEKQIWDAACVLW-GHIPAAEYRKVIVGLIFLRYISSAFEKRYEELLKDGDGFENDRDAY 69 Query: 44 -GQEAEYLPEGYRWDDLKSRIGQEQLQ-FYRKMLVHLGEDDKKLVQAVFHNVSTTITEPK 101 + ++PE RW + S ++ + + +++ L + N ++ + + Sbjct: 70 AEENIFFVPEEARWSKISSAAHTPEIGTVIDDAMRAIEKENTSLKNVLPKNYASPDLDKR 129 Query: 102 QITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIH 161 + +V + +G S+D G YE + + A + G+++TP ++KTI+ Sbjct: 130 VLGEVVDLFTNEVKMDGTEA-SKDLLGRTYEYCIAQFAAYEGTKGGEFYTPSSIVKTIVA 188 Query: 162 LLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGT 221 +LKP V DP G+ G ++++++V++ +++ ++ + G E T Sbjct: 189 ILKPFNNCRVYDPCCGSGGMFVQSEKFVQAHSDNRGNI-----------SVYGQESNADT 237 Query: 222 RRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAG------- 274 ++A MN + I+ N +T +D K+ + NPPF + Sbjct: 238 WKMAKMNMAIRGIDANFGSY----HADTFFNDIHKTLKSDFIMANPPFNLSNWGADKLKD 293 Query: 275 TNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGT-DIRRDLMDKCH 333 + P+ N ++QH+I L P G+ +V+ + L G +IRR +++ Sbjct: 294 DVRWKYGTPPSGNANYAWIQHMIHHLAPNGKIGLVLANGALSSQSSGEGEIRRKIIEDDL 353 Query: 334 LHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSF-GKRTP 392 + I+ LPT +FY+ + + F TK K D R K Sbjct: 354 IEGIVALPTQLFYSVTIPVTLWFITKN--------KKQKGKTLFIDARKMGYMVDRKHRD 405 Query: 393 FTD--------EHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLAT 444 FT+ + + + + +G +G + +A E+ D L Sbjct: 406 FTEGIQADGSLGDIDLLAKTFEDFQNGELKEKKG-------FSAIASIEDIAKQDYILTP 458 Query: 445 SRWRKFSREW 454 R+ + Sbjct: 459 GRYVGIEEQE 468 >UniRef50_C5ZY48 Type I restriction-modification system, M subunit n=1 Tax=Helicobacter canadensis MIT 98-5491 RepID=C5ZY48_9HELI Length = 499 Score = 305 bits (782), Expect = 2e-81, Method: Composition-based stats. Identities = 113/478 (23%), Positives = 206/478 (43%), Gaps = 52/478 (10%) Query: 6 LVAKLWKLCDNLR-DGGVS-YQNYVNELASLLFLKMCKETGQE------------AEYLP 51 + + ++ D LR D G+S +Y +++ +LFLK + +E A L Sbjct: 1 MQNTIDRITDILRRDDGISGAMHYSEQISWILFLKFLDDYERELKDEAFLNDVPYASILD 60 Query: 52 EGYRWDDLKS------------RIGQEQLQFYRKMLVHLGEDDKK---------LVQAVF 90 Y W + G + L+F L + K + +F Sbjct: 61 SQYAWQSWAAPKKDGKLDVKNALSGSDLLEFVNNELFPYLKSFKNNEDFKSIAYKIGGIF 120 Query: 91 HNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYF 150 + I + +++ +D L + + GD+YE LL+ ++ +G+++ Sbjct: 121 EFIDNRIANGHTLREVINLIDELSF---SKESDVFALGDVYEKLLKDMGSD-GGNSGEFY 176 Query: 151 TPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYV---KSQTNDLDDLDGDTQDFQ 207 TPR L+K ++ ++ P+P+E + DPA G+ GFL+E+ ++ +L + +F Sbjct: 177 TPRALVKVMVEVINPKPKERIYDPACGSCGFLVESFLHILYEDRAKGQKANLSVEELEFL 236 Query: 208 IHRAFIGLELVPGTRRLALMNCLLHDIE-GNLDHGGAIRLGNTLGSDGENLPKAHIVATN 266 A G E P + + +MN +LH I+ N+ + T D + ++ N Sbjct: 237 QKDALFGKEKTPLSYAMGVMNMILHGIKSPNIIKTNTLSKRIT---DITESERYEVILAN 293 Query: 267 PPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLF-EGGKGTDIR 325 PPFG I F+ P++ +L F+QHI+++L GR A++VP+ VLF ++ Sbjct: 294 PPFGGKEKEQIQGNFIVPSNATELLFLQHILKSLKTNGRCAIIVPEGVLFQNSNAFVKVK 353 Query: 326 RDLMDKCHLHTILRLPTGIFYAQG-VKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNM 384 +DL++ +L +L LP+G+F VKTNVLFF+KG ++ +V+ Y+L Sbjct: 354 QDLIENYNLECVLSLPSGVFLPYSAVKTNVLFFSKGLRGIVDEQ---DSNVYYYEL-IPP 409 Query: 385 PSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHL 442 K P H + F Y + A +++ N ++ L Sbjct: 410 YKLTKNKPLEYVHFKEFLECYKQRKITPHSYLVSLEELKARNYDLSAKNPNTKEEKSL 467 >UniRef50_B1VHI4 Type I restriction-modification system, methyltransferase subunit n=4 Tax=Bacteria RepID=B1VHI4_CORU7 Length = 865 Score = 304 bits (778), Expect = 6e-81, Method: Composition-based stats. Identities = 88/506 (17%), Positives = 181/506 (35%), Gaps = 92/506 (18%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQ--------EAEYLPE 52 MN +L +++W+ +N+R + Y + + +F K + + E E LP+ Sbjct: 1 MNKQELASRIWESANNMR-SKIEANEYKDYILGFIFYKFLSDQVEQFMLDNDAEPEDLPD 59 Query: 53 GY-----------------------RWDDLKSRIGQEQLQFYRKML----VHLGEDDKKL 85 + + + + R+ L ++ + K + Sbjct: 60 ALVETDTDTVALVRNNLGYFLTYENLYSTWRDKGNDFSIAHVREGLATFKRNIAPERKHV 119 Query: 86 VQAVFHNVSTTI-----TEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNAN 140 + + + T++ T+ + A+ +D +D + D G +YE L++K A Sbjct: 120 FDGILNTLDTSLSKLGTTDAARTAAIKKLLDLIDDIPTDGKQGYDVLGYIYEYLIEKFAA 179 Query: 141 ETKSGAGQYFTPRPLIKTIIHLLKPQPREV----VQDPAAGTAGFLIEADRYVKSQTNDL 196 AG+++TP + + +++ + + DP +G+ L+ + V + D Sbjct: 180 NAGKKAGEFYTPHEVSLVMSNIVADHLKGRDEIQIYDPTSGSGSLLLNIGQAVAKRMGDP 239 Query: 197 DDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN---LDHGGAIRLGNTLGSD 253 D + + EL T L MN ++ ++ + +G ++ + + Sbjct: 240 DRIK-----------YFAQELRENTYNLTRMNLVMRGVKADNIVARNGDSLAHDWPMFDE 288 Query: 254 GENLPKA-----HIVATNPPFGSAAGTN-------ITRTFVHPTSNKQLCFMQHIIETLH 301 + + V +NPP+ R + P + F+ H + + Sbjct: 289 SDPVQTYQPLYVDAVVSNPPYSQKWEPEGNGADPRFARFALAPKTKADYAFLLHELFHVK 348 Query: 302 PGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGT 361 P G +V+P VLF GG DIRR+L++ H+ ++ LP+ IFY G+ T ++ Sbjct: 349 PDGILTIVLPHGVLFRGGSEADIRRNLIEANHIDAVIGLPSNIFYGTGIATIIMVL---- 404 Query: 362 VANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWS 421 + + DDV D GK +Q Sbjct: 405 -----KQERDRDDVLFIDASQGFIKQGKYNHLRARDIQRIVDAVHNRVD----------- 448 Query: 422 FNAEETEVADSEENKNTDQHLATSRW 447 +V +E + D +L R+ Sbjct: 449 -VPHFAKVVTRDEIRANDHNLNIPRY 473 >UniRef50_C7MM99 Type I restriction system adenine methylase HsdM n=8 Tax=Bacteria RepID=C7MM99_CRYCD Length = 856 Score = 303 bits (776), Expect = 1e-80, Method: Composition-based stats. Identities = 110/575 (19%), Positives = 201/575 (34%), Gaps = 98/575 (17%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETG---------------Q 45 MN L +K+W+ + +R + Y + + +F K ET Sbjct: 1 MNKQQLASKIWESANKMR-STIEASQYKDYILGFIFYKFLSETEVARLKAKDFAESDLPT 59 Query: 46 EAEYLPEGYRW---------------DDLKSRIGQEQLQFYRKMLVHLGED----DKKLV 86 E PE + ++ ++ R L + KK+ Sbjct: 60 LTEDDPETVAFVRGECGYFIAYDDLFQTWIAKGKDFEIADVRDALSAFDRNVSPAHKKVF 119 Query: 87 QAVFHNVSTTITE-----PKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANE 141 + +F + T +++ Q A + + + D G +YE LL+K A Sbjct: 120 EKIFETLQTGLSKLGTDARSQSKAARDLIQLIKDIPMDGRQDYDVLGYIYEYLLEKFATN 179 Query: 142 TKSGAGQYFTPRPLIKTIIHL----LKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLD 197 AG+++TP + + I + L+ + + + DP +G+ LI + V + + D Sbjct: 180 AGKKAGEFYTPHEVSQLISEIVAWHLQSRRQIEIYDPTSGSGSLLINIGKAVARRNGNPD 239 Query: 198 DLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENL 257 + + EL T L MN ++ I L A+R G+TL D Sbjct: 240 SIK-----------YYAQELKENTYNLTRMNLVMRGI---LPDNIAVRNGDTLADDWPWF 285 Query: 258 P------------KAHIVATNPPFGSAAG------TNITRTFVHPTSNKQLCFMQHIIET 299 V +NPP+ V P S F+ H + Sbjct: 286 DTVENKDETYKPLFVDAVVSNPPYSQDWDPVDKEIDPRFEYGVAPKSKADYAFLLHDLYH 345 Query: 300 LHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTK 359 L G +V+P VLF GG+ IRR+L++ H+ I+ LP IF+ G+ T ++ K Sbjct: 346 LRNDGIMCIVLPHGVLFRGGEEGLIRRNLVEHRHIQAIIGLPANIFFGTGIPTIIMVLRK 405 Query: 360 GTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGE 419 A D+V V D GK ++ + Sbjct: 406 QRAA-------GDDNVLVVDASKYFMKEGKNNKLRASDIKRIVDA------VTTNTDVDS 452 Query: 420 WSFNAEETEVADSEENKNTDQHLATSR----WRKFSREW--IRTAKSDSLDISWLKDKDS 473 +S + E+ ++ N N +++ +S W F+ + + + D+LD W Sbjct: 453 FSRSVTIDEIRKNDYNLNIPRYVDSSEAPEGWDVFATMFGGVPVTEVDALDEYWTAWPSL 512 Query: 474 ID---ADSLPEPDVLAAEAMGELVQALSELDALMR 505 D+ A + E++ A +++ + + Sbjct: 513 KAQLFTDNGSSCLTPTASNVAEVIAANTDVKSFIT 547 >UniRef50_Q2KZB8 Restriction-modification system, modification (Methylase) subunit (Fragment) n=24 Tax=Bacteria RepID=Q2KZB8_BORA1 Length = 924 Score = 303 bits (775), Expect = 1e-80, Method: Composition-based stats. Identities = 88/504 (17%), Positives = 170/504 (33%), Gaps = 83/504 (16%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKET----GQEAEYLPEGYR- 55 +N L AK+W+ + +R + Y + + +F K + ++ E + Sbjct: 1 VNKQQLAAKIWESANQMR-SKIEANEYKDYILGFIFYKYLSDRLVAFASAEDFTDEDFSA 59 Query: 56 -------------------------WDDLKSRIGQEQLQFYRKMLVHLGE----DDKKLV 86 + + + R+ L + K+L Sbjct: 60 VTEEDTETVEHFKSNLGYFIAHKHLFSTWLDQTSDFTVGDVREALSAFSRLIHPNHKRLF 119 Query: 87 QAVFHNVSTTITE-----PKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANE 141 + +F + T +++ KQ A+ + + + D G +YE L+ A Sbjct: 120 EGIFKTLETGLSKLGDTAAKQTKAIGDLLQLIKDIPMDGKQGYDVLGFIYEYLIGMFAAS 179 Query: 142 TKSGAGQYFTPRPLIKTIIHLLKPQPREV----VQDPAAGTAGFLIEADRYVKSQTNDLD 197 AG+++TP + + ++ ++ + D +G+ L+ + + D D Sbjct: 180 AGKKAGEFYTPHEVSVLMSEVIAHHLKDRETIQIYDSTSGSGSLLLNIGQAIAKHMGDKD 239 Query: 198 DLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI-EGNL--DHGGAIRLGNTLGSDG 254 + + EL T L MN ++ I GN+ + + + Sbjct: 240 SIK-----------YYAQELKENTYNLTRMNLVMRGILPGNIVTRNADTLEDDWPYFDEQ 288 Query: 255 ENLPKA-----HIVATNPPFGSAAGT-------NITRTFVHPTSNKQLCFMQHIIETLHP 302 + + V +NPP+ R + P S F+ H + L P Sbjct: 289 DPVNSYNPLYLDAVVSNPPYSQKWDPLHKDADPRYARFGLAPKSKADYAFLLHDLYHLKP 348 Query: 303 GGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTV 362 G A+V+P VLF GG+ IR+ L++ HL TI+ LP+ IF+ G+ T +L Sbjct: 349 NGIMAIVLPHGVLFRGGEEGVIRKQLIENDHLETIIGLPSNIFFGTGIPTVILVLR---- 404 Query: 363 ANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSF 422 K + DV D GK ++ V + Sbjct: 405 -----QKRESSDVLFVDASKGFAKEGKNNKLRACDIKKITDVVIARATVPGFSRLVPKTE 459 Query: 423 NAEETEVADSEENKNTDQHLATSR 446 E ++ N N +++ +S Sbjct: 460 LQGEA----NDYNLNIPRYVDSSE 479 >UniRef50_B7KLE1 N-6 DNA methylase n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7KLE1_CYAP7 Length = 503 Score = 303 bits (775), Expect = 1e-80, Method: Composition-based stats. Identities = 128/485 (26%), Positives = 214/485 (44%), Gaps = 57/485 (11%) Query: 2 NNNDLVAKLWKLCDNLRDGGV-SYQNYVNELASLLFLKMCKETGQE------------AE 48 L + + +CD +R YV EL+ +LFLK+ +T Q + Sbjct: 12 TQQGLNSYIKNICDIMRRSNCAGALQYVPELSWILFLKILDDTEQREAEEAEAVGDRFDD 71 Query: 49 YLPEGYRWDDLKSRIGQEQLQ-----------FYRKMLVHLGEDDK---------KLVQA 88 + E YRW D + G ++L+ F ++ + K K++ Sbjct: 72 SIAEPYRWRDWAAPQGTQRLKLQMGEMGKFIPFVNDEVIPYLKGLKDKPRATPRQKIISE 131 Query: 89 VFHNVS-TTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAG 147 V NV I + ++ + +D+ + H +YEGLL K + + G Sbjct: 132 VMSNVERVRIDSEANLLDILDKVHEIDYIDTTHIFP---ISQVYEGLLLKMGEK-NNDGG 187 Query: 148 QYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQ 207 Q+FTPR +++ +I ++ P+ E + DPA GT GFL ++ Y++ D D+ + + Sbjct: 188 QFFTPREIVRAMIKIINPKVGEKIYDPACGTGGFLAQSYEYIRDNLGD--DITPEQLEPL 245 Query: 208 IHRAFIGLELVPGTRRLALMNCLLHDIE-GNLDHGGAIRLGNTLGSDGENLPK-AHIVAT 265 F G E +AL N +LH I+ +L HG + T G ++ P I+ T Sbjct: 246 KLNTFYGREKENLIYPIALANLVLHGIDLPHLWHGNTLNGEVTYGDLFKDAPPLFDIILT 305 Query: 266 NPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDI- 324 NPPFG + F + TS Q+ F+QH+I++L PGGR +V+ + VLF + + Sbjct: 306 NPPFGGKEHKTVQAQFDYKTSATQVLFLQHVIKSLAPGGRCGIVLDEGVLFRTNEKAFVQ 365 Query: 325 -RRDLMDKCHLHTILRLPTGIFYAQ--GVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLR 381 +R L++ C+L+ I+ LP G F A GVK N+LFF+KG T+ +W YDL Sbjct: 366 TKRKLLNDCNLYCIISLPAGTFKAAGGGVKANILFFSKG---------EPTEKIWYYDLS 416 Query: 382 TNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQH 441 S KR P + F +++ T A+ ++ N + + Sbjct: 417 DI--SVTKRKPLNLSDFEEFFKLFPSREESDKSWTITREEIEAKNFDLKAVNPNAQSFED 474 Query: 442 LATSR 446 +T + Sbjct: 475 KSTPK 479 >UniRef50_Q47282 Type I restriction enzyme EcoEI M protein n=110 Tax=Bacteria RepID=T1ME_ECOLX Length = 490 Score = 302 bits (774), Expect = 2e-80, Method: Composition-based stats. Identities = 125/496 (25%), Positives = 210/496 (42%), Gaps = 52/496 (10%) Query: 5 DLVAKLWKLCDNLRDG-GVS-YQNYVNELASLLFLKMCK--------ETGQEAEYLPEGY 54 + + + L D +R GV + +L+ LLFLK+ E +P+ Y Sbjct: 2 SISSVIKSLQDIMRKDAGVDGDAQRLGQLSWLLFLKIFDTQEEELELEQDDYQFPIPQRY 61 Query: 55 RWDDLKSR----IGQEQLQFYRKMLVHLGEDDKK---------LVQAVFHNVSTTITEPK 101 W + G L+F L ++ +V+ F + + Sbjct: 62 LWRSWAANSEGITGDALLEFVNDDLFPTLKNLTAPIDKNPRGFVVKQAFSDAYNYMKNGT 121 Query: 102 QITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIH 161 + +++ ++ +D+ + + R FGD+YE +L+ ++ AG+++TPR + + +++ Sbjct: 122 LLRQVINKLNEIDFSSS---QERHLFGDIYEQILRDL--QSAGNAGEFYTPRAVTRFMVN 176 Query: 162 LLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGT 221 + P+ E + DPA GT GFL A +VK + + + G+E Sbjct: 177 RIDPKLGESIMDPACGTGGFLACAFDHVKDNY-----VKTTEDHKTLQQQIYGVEKKQLP 231 Query: 222 RRLALMNCLLHDIEGNLDHGGAIRLGNTLGSD-GENLPKAHIVATNPPFGSAAGTNITRT 280 L N LLH IE + IR NTL + ++ TNPPFG I + Sbjct: 232 HLLCTTNMLLHGIEVPV----QIRHDNTLNKPLSSWDEQVDVIVTNPPFGGTEEDGIEKN 287 Query: 281 FVHP--TSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTIL 338 F T F+Q IIE L GRAAVV+PD LF G T I++ L ++C+LHTI+ Sbjct: 288 FPAEMQTRETADLFLQLIIEVLADKGRAAVVLPDGTLFGEGVKTKIKKLLTEECNLHTIV 347 Query: 339 RLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYD--LRTNMPSFGKRTPFTD 395 RLP G+F G+KTN+LFFTKG T +VW Y+ + ++ K P Sbjct: 348 RLPNGVFNPYTGIKTNILFFTKG---------QPTKEVWFYEHPYPDGVKNYSKTKPMKF 398 Query: 396 EHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWI 455 E Q +G + + R E ++ ++ N + E + Sbjct: 399 EEFQAEIDWWGNEADDFASREENNQAWKVGIDDIIARNFNLDIKNPYQGETISHDPDELL 458 Query: 456 RTAKSDSLDISWLKDK 471 ++ +I L+++ Sbjct: 459 AQYQTQQAEIGELRNQ 474 >UniRef50_B5ZAK9 Type I restriction enzyme n=13 Tax=Mycoplasmataceae RepID=B5ZAK9_UREU1 Length = 510 Score = 302 bits (772), Expect = 3e-80, Method: Composition-based stats. Identities = 102/536 (19%), Positives = 202/536 (37%), Gaps = 74/536 (13%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAE------------ 48 +N +D+ LW CD LR G +S + Y++ + ++FLK + A Sbjct: 9 INIDDIANDLWASCDELR-GNISSEQYMHIIIGIIFLKTISDKYNYAINALKDKYKDKFN 67 Query: 49 ------------------YLPEGYRWDDLKSRIGQEQL-QFYRKMLVHLGEDDKKLVQAV 89 +P+ W+ + + + + + + + +L Sbjct: 68 DSIKNDSDLISEFFPLGLIVPDEAHWNYISGFTTDSSIGEKIDQAFLKIENQNPRLKGLF 127 Query: 90 FHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQY 149 ++ + ++ +V + D+ + D G +YE L + + G++ Sbjct: 128 NKQYNSPELDKTRLGNVVRKFNDYDFSQF----NEDLVGRIYEYFLGEFFRKQGQKGGEF 183 Query: 150 FTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIH 209 +TP+ +++ +I +L P + DPA GT G ++A Y+ Q D + L Sbjct: 184 YTPKTVVELLIDILDPNDNIKMYDPACGTGGMFVQARNYLHEQNKDYNKL---------- 233 Query: 210 RAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPF 269 G E T +LA +N LL+ N H G +T D K I+ NPPF Sbjct: 234 -VIYGQEYQSQTWKLAKINLLLNGFNENDIHLGRGSE-DTFKEDLHKGQKFDIIVANPPF 291 Query: 270 GSAAG-------TNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGT 322 + P +N ++ HII L+ G+A V++ + L K Sbjct: 292 NLKKWYREELLNDERFSWGMPPENNANYAWLLHIISKLNSRGKAGVILANGSLSSSNKEE 351 Query: 323 D-IRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLR 381 +R+ ++++ + I+ LP +FY + ++ FF K ++V + Sbjct: 352 SLLRKKMIEENIVDAIISLPDKLFYTTQISASIWFFNKNKE---------NENVLFIEAS 402 Query: 382 TNMP-SFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQ 440 K T +++ + VY +GE + +E D Sbjct: 403 KMGELKTKKLRFLTKDNISKIKNVY-------DKHEQGEDVNVVGFAKTCTIDEIIENDY 455 Query: 441 HLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQA 496 L R+ F +E I + + +I L+++ S+ D L + A E++ ++++ Sbjct: 456 SLVPGRYVGFEQEVIDHEQL-NHEIKGLQEELSVLFDELEDLIPQAKESIKKVLEK 510 >UniRef50_A5VLF8 N-6 DNA methylase n=17 Tax=Bacteria RepID=A5VLF8_LACRD Length = 517 Score = 302 bits (772), Expect = 3e-80, Method: Composition-based stats. Identities = 112/539 (20%), Positives = 223/539 (41%), Gaps = 73/539 (13%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQ-NYVNELASLLFLKMCKETGQEAEYLP-------- 51 M +L +K+ L + GG++ N + ++ L+F+K ++ + Sbjct: 1 MIAGELKSKIDGLWETFATGGLTNPLNVIEQITYLMFIKDLDDSDNRRKKDNILLGLNDY 60 Query: 52 ------------------EGYRWDDLKSRIGQEQLQFYRK----MLVHLGEDDKKLVQAV 89 + RW K ++ + + +L +++ Sbjct: 61 QSIFDGEVKIDDDLTVNGDELRWSTFKDFAPEKMFTIVQTEVFPFIKNLKNNEEGSYARY 120 Query: 90 FHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSR--------------DDFGDMYEGLL 135 + + I P ++ ++ +D + + D GD+YE LL Sbjct: 121 MKDATFLIPTPGLLSKVIGELDDIYRLMDEEVQKDNSKNKEKALIINRGDVRGDVYEYLL 180 Query: 136 QKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTND 195 K + ++ GQ+ TPR +IK I+ L+ PQ + + DPAAGTAGFL+E+ +++ + + Sbjct: 181 GKLSTAGRN--GQFRTPRHIIKMIVELMNPQVTDKICDPAAGTAGFLVESAEFLQDKKKE 238 Query: 196 LDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGE 255 + + + + + F G + R+ MN L H ++ + ++L Sbjct: 239 EIFYNKENRHYFHNEMFTGYDTDQTMLRIGAMNMLSHGVD-----NPNVEYQDSLSEQNT 293 Query: 256 NLPKAHIVATNPPFGSAAGTN---ITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPD 312 + + ++ NPPF + N + T +L F+ ++ L GGR A +VPD Sbjct: 294 DRDEYSLIMANPPFKGSLDYNSVSKDLLKICKTKKTELLFVTLFLQMLKVGGRCACIVPD 353 Query: 313 NVLFEGGKG-TDIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKN 370 VLF K IR+++++ +L ++ +P+G+F GV T +L FTK Sbjct: 354 GVLFGSSKAHKSIRKEIIENNNLEAVISMPSGVFKPYAGVSTAILIFTK-------TGNG 406 Query: 371 CTDDVWVYDLRTNMPSF-GKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEV 429 TD VW YD+ + S KRTP + + + R + SF ++ ++ Sbjct: 407 GTDKVWFYDMTADGFSLDDKRTPVKENDIPDIIERFNH-LDKEVDRKKTNKSFMVDKKDI 465 Query: 430 ADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAE 488 D+ D L+ +R+++ + ++ ++ + I+ ++ D D+L E L + Sbjct: 466 VDN------DYDLSINRYKEIEYKPVKYPPTEEI-IAEIEKLDKEANDALQELKALLKD 517 >UniRef50_B1VEP0 Type I restriction-modification system, methyltransferase subunit n=1 Tax=Corynebacterium urealyticum DSM 7109 RepID=B1VEP0_CORU7 Length = 524 Score = 302 bits (772), Expect = 3e-80, Method: Composition-based stats. Identities = 129/549 (23%), Positives = 227/549 (41%), Gaps = 73/549 (13%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVS-YQNYVNELASLLFLKMCKETGQEAEYL--------- 50 M L ++ + + GG+S + + + LLF++ E ++ Sbjct: 1 MITGALKNQVDAIWNTFWSGGISEPVSVIQQFTYLLFMRQLDERQANNDFQREALGVEPD 60 Query: 51 --------PEGYRWDDLKSRIG--QEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEP 100 + RW +L + + + + S I P Sbjct: 61 IPDVFTEDQQHLRWRNLMEISDGSDRREVIVNEAFPFIRNLGGSGFGRHMRDASFGIENP 120 Query: 101 KQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTII 160 + ++ +D+L++ N RD GD+YE +L K A+ GQ+ T +I ++ Sbjct: 121 ATLLRVMEQVDALEFTN------RDMSGDLYEYMLSKLASS--GTNGQFRTTSHIIDLMV 172 Query: 161 HLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPG 220 L++P P+ V DPA GTAGFL+ A + + D + +D D+ RA G + Sbjct: 173 ELMRPAPKHRVIDPACGTAGFLVGAREWTRHHHAD-EFMDRRVSDWYTQRALTGFDFDSS 231 Query: 221 TRRLALMNCLLHDIE-GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITR 279 R+A MN +H E N+ + +++ + I+ NPPF + + Sbjct: 232 MVRIAAMNMFMHGFEDPNISYRDSLQQ-----VPEADREAFDIILANPPFAGSIDESSLD 286 Query: 280 TFVHP---TSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKG-TDIRRDLMDKCHLH 335 + + +L F+ + L PGGRAAV+VP+ VLF K +IR+ L+D+ L Sbjct: 287 PELANLISSKRTELLFLARFLTLLKPGGRAAVIVPEGVLFGSTKAHREIRKHLIDEQRLD 346 Query: 336 TILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSF-GKRTPF 393 +++LP+G F GV T +L FT+ D+ TDDVW Y++ + S KRTP Sbjct: 347 AVIKLPSGTFKPYSGVSTAILCFTR-------TDRGSTDDVWFYEVTADGYSLDDKRTPL 399 Query: 394 TDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSRE 453 D +L G P + AE ++ E N LA RW + S + Sbjct: 400 LDANL------LGPRPTERVADSSVPGDDPAEVLLTSEQHEANNLPDVLA--RWVERSGK 451 Query: 454 W---IRTAKSDSLDISWLKDKD-----------SIDADSLPEPDVLAAEAMG---ELVQA 496 RT +S ++ ++ +++ +A+ +P + E + + Sbjct: 452 EKERARTEQSFTVPVAEIREAGYDLSMNRYKEIVFEAEDTRDPLEIIGEIKELDSAIAEG 511 Query: 497 LSELDALMR 505 L+EL+ ++R Sbjct: 512 LAELEEMLR 520 >UniRef50_B2UNL2 Type I restriction-modification system, M subunit n=8 Tax=Bacteria RepID=B2UNL2_AKKM8 Length = 853 Score = 301 bits (771), Expect = 4e-80, Method: Composition-based stats. Identities = 97/534 (18%), Positives = 182/534 (34%), Gaps = 94/534 (17%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETG----QEAEYLPEGY-- 54 MN L +K+W+ + +R + Y + + +F K + +E ++ + Sbjct: 1 MNKQQLASKIWESANKMR-SKIEANEYKDYILGFIFYKFLSDKEVKFLKENDWTDDDLPH 59 Query: 55 -------RWDDLKSRIG---------------------QEQLQFYRKMLVHLGEDDKKLV 86 D ++S +G + + + KK+ Sbjct: 60 VTEDDAETVDYIRSNVGYFISYKHLFSTWIDKGSDFNAADVTEALSAFSRLINPSHKKVF 119 Query: 87 QAVFHNVSTTITE-----PKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANE 141 VF + T +++ + A+ + + + D G +YE L+ A Sbjct: 120 DKVFATLETGLSKLGENSGARTKAIRDLLHLIKDIPMDGRQDYDVLGFIYEYLISNFAAN 179 Query: 142 TKSGAGQYFTPRPLIKTIIHLLKPQPREV----VQDPAAGTAGFLIEADRYVKSQTNDLD 197 AG+++TP + + ++ ++ + DP +G+ LI + V D Sbjct: 180 AGKKAGEFYTPHEVSLLMSEIVAAHLKDRQQIKIYDPTSGSGSLLINIGKCVARYMGGGD 239 Query: 198 DLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN---LDHGGAIRLGNTLGSDG 254 ++ + EL T L MN ++ I N +G + D Sbjct: 240 NIK-----------YYAQELKENTYNLTRMNLVMRGILPNNIVTRNGDTLEEDWPYFDDN 288 Query: 255 ENLPKAH-----IVATNPPFGSAAG------TNITRTFVHPTSNKQLCFMQHIIETLHPG 303 + + V +NPP+ + R + P F+ H + L P Sbjct: 289 DPVNTYDPLYVDAVVSNPPYSQSWNPADKESDPRYRFGLAPKGKADYAFLLHDLYHLKPD 348 Query: 304 GRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVA 363 G +V+P VLF GG IRR+L++ H+ I+ LP IF+ G+ T ++ Sbjct: 349 GIMTIVLPHGVLFRGGTEGAIRRNLVEYNHIDAIIGLPANIFFGTGIPTIIMVL------ 402 Query: 364 NPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFN 423 + K DV + D GK ++ V +S R + E Sbjct: 403 ---KQKRENTDVLIVDASKGFAKVGKNNVLRACDIKKIVDV-------VSARADVE---- 448 Query: 424 AEETEVADSEENKNTDQHLATSRW----RKFSREWIRTAKSDSLDISWLKDKDS 473 + +V +E + D +L R+ K R I + +S L D Sbjct: 449 -KFAKVVSLDEIRGNDYNLNIPRYVDSSDKNERWDIFATMFGGIPLSELADFHE 501 >UniRef50_Q3A0E7 Type I restriction-modification system methyltransferase subunit n=26 Tax=Bacteria RepID=Q3A0E7_PELCD Length = 708 Score = 301 bits (770), Expect = 5e-80, Method: Composition-based stats. Identities = 94/490 (19%), Positives = 178/490 (36%), Gaps = 66/490 (13%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA------------- 47 ++ + L + LW LR G + +Y + LLF K + E Sbjct: 2 ISQSQLESYLWGAATLLR-GYIDAGDYKQFIFPLLFYKRLCDVYDEELADALEESGGDQE 60 Query: 48 ---------EYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTIT 98 +PE W ++++ + + L + + + VF + T Sbjct: 61 YAALPEQHRFQIPEDAHWKATRTKVK-NVGKVIQDALRAIETANPDTLYGVFGDAQWTNK 119 Query: 99 EP---KQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPL 155 + + + L+ + S D+ G YE L++K A+++ A +++T R + Sbjct: 120 DRLPDRMLRELIEHFSSQTL--SLSNCPEDELGVGYEFLIKKFADDSGHTAAEFYTNRTV 177 Query: 156 IKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGL 215 + + +L+P+P E + DP G+AG L+ A ++K Q + +L G Sbjct: 178 VHLMTEMLEPRPGESIYDPTCGSAGMLLSAVAHLKRQNKEWRNL-----------RLFGQ 226 Query: 216 ELVPGTRRLALMNCLLHDIE-GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAG 274 E T + MN LH IE + G + N +G+ L + +V NPP+ Sbjct: 227 ERNLLTSAIGRMNLFLHGIEDFRIVRGDTL--ANPAFVEGDRLKQFDVVLANPPYSIKQW 284 Query: 275 T---------NITRTFVHPTSNKQLCFMQHIIETLHPG-GRAAVVVPDNVLFEGGKGTDI 324 P F QHII+++ GR A++ P VLF + + Sbjct: 285 DRDAWSADSWGRNLYGTPPQGRADYAFWQHIIKSMKAKSGRCAILFPHGVLFR-NEELAM 343 Query: 325 RRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNM 384 R L+ + +L L +FY ++ V+ N+ K + V + + Sbjct: 344 REKLVAHDVVECVLGLGPNLFYNSPMEACVVI------CRMNKPKERRNKVLFINAVNEV 397 Query: 385 PSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLAT 444 ++ TD+H+Q Y E ++ + E+ + N + ++ Sbjct: 398 TRERAQSFLTDDHIQHIVAAYQTFGD------EDGFARVVGDDEIREKGSNLSIPLYVRA 451 Query: 445 SRWRKFSREW 454 R Sbjct: 452 DNSNAQERSE 461 >UniRef50_Q11PS3 Type I restriction-modification system, M subunit n=5 Tax=Bacteria RepID=Q11PS3_CYTH3 Length = 528 Score = 300 bits (768), Expect = 8e-80, Method: Composition-based stats. Identities = 112/565 (19%), Positives = 198/565 (35%), Gaps = 126/565 (22%) Query: 6 LVAKLWKLCDNLRDGGVSYQNYVNELASLLFL-----KM--------------------- 39 L +LW + + LR G ++ + + + +F KM Sbjct: 9 LEQQLWNIANTLR-GKMNADEFRDYILGFIFYKYLSEKMEIFANDILKQDKISFREITPK 67 Query: 40 ----------------------------CKETGQEAE-YLPEGYRWDDLKSRIGQEQLQ- 69 E + EG +D+ K+ E LQ Sbjct: 68 LKQGKEYLEAIREEALEKLGYFLKPEELFSEVAKRGRGSNDEGENFDEAKTNFILEDLQK 127 Query: 70 -FYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQ--------ITALVSNMDSLDWYNGAH 120 L +G D ++ +F ++ T+ + I +++++D +D+ Sbjct: 128 ILINIQLSTMGTDSEEDFDNLFEDMDLNSTKLGKTPDARNAIIAKVLTHLDKIDF--KLE 185 Query: 121 GKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPRE--VVQDPAAGT 178 D GD YE L+ + A+ AG+++TP+ + K + ++ + + V DP G+ Sbjct: 186 DLESDVLGDSYEYLIGQFASGAGKKAGEFYTPQQVSKILAKIVTTEKHKLKSVYDPTCGS 245 Query: 179 AGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNL 238 L+ R VK F G E+ T LA MN +LH + Sbjct: 246 GSLLLRVAREVKDVAK-----------------FYGQEMNRTTYNLARMNMILHGVHYRK 288 Query: 239 DHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNI----TRTF-----VHPTSNKQ 289 I+ +TL + + NPPF + N F + P S Sbjct: 289 F---DIKQEDTLEHPQHMGQQFEAIVANPPFSAQWSANPLHLSDDRFSQYGKLAPASKAD 345 Query: 290 LCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMD-KCHLHTILRLPTGIFYAQ 348 F+QH++ L G A+V+P VLF GG IR+ L++ K +L ++ LP IFY Sbjct: 346 YAFVQHMVHHLAENGIMALVLPHGVLFRGGAEQHIRKYLIEQKNYLDAVIGLPGNIFYGT 405 Query: 349 GVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGED 408 + T +L K + D++ D + ++H+ Y Sbjct: 406 SIPTCILVIKKC--------REMPDNILFIDASKEFEKVKTQNILREKHIDKIVDTY--- 454 Query: 409 PHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWL 468 S + ++S A E+A+++ N N +++ T F E +DI + Sbjct: 455 ---RSRKEIEKYSHCASLKEIAENDFNLNIPRYVDT-----FEEEE-------EIDIQAV 499 Query: 469 KDKDSIDADSLPEPDVLAAEAMGEL 493 + + D M EL Sbjct: 500 MAEIKNLEAKRTDLDKQIDVYMKEL 524 >UniRef50_B8KQ49 Type I restriction-modification system, M subunit n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KQ49_9GAMM Length = 489 Score = 300 bits (767), Expect = 1e-79, Method: Composition-based stats. Identities = 122/466 (26%), Positives = 209/466 (44%), Gaps = 53/466 (11%) Query: 4 NDLVAKLWKLCDNLRDG-GVS-YQNYVNELASLLFLKMCKETGQEAE--------YLPEG 53 ++ + + D +R GV +++L ++FLK+ + E E +PE Sbjct: 2 TNITGVIKSIQDIMRKDVGVDGDAQRISQLVWMIFLKILDDREAELELIEDDFVSPIPEH 61 Query: 54 YRWDDLKSR----IGQEQLQFYRKMLVHLGEDDK---------KLVQAVFHNVSTTITEP 100 RW + + G+ L F +L ++ + ++V+++F + Sbjct: 62 LRWRNWAANPEGQTGEALLDFVNGVLFPKLKELQAQGAVGKRAQVVRSIFDGALNFMKSG 121 Query: 101 KQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTII 160 + +++ ++ +D+ N ++R FGD+YE +L+ ++ AG+++TPR + + II Sbjct: 122 TLMRQVINKINEIDFNNT---ENRHTFGDIYEKILKDL--QSAGNAGEFYTPRAVTRLII 176 Query: 161 HLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPG 220 L PQ E+V DPA GT GFL A + + D + R G+E Sbjct: 177 DRLNPQLDEIVFDPACGTGGFLSCAIDHKQQFVRTSAD------RETLARTLRGVEKKSM 230 Query: 221 TRRLALMNCLLHDIEG--NLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNIT 278 L + N +LH I+ + H + D + + H++ATNPPFG I Sbjct: 231 PFNLCITNMILHGIDTPTGIAHDNTLARP---FKDYGDKDRVHVIATNPPFGGMEEDGIE 287 Query: 279 RTFV--HPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHT 336 F + T FM II+ L GRA V++PD LF G + I++DL++ C+LHT Sbjct: 288 NNFPAQYRTRETADLFMALIIKLLRVNGRAGVILPDGFLFGEGTKSSIKKDLIETCNLHT 347 Query: 337 ILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYD--LRTNMPSFGKRTPF 393 I+RLP G+F G+KTN+LFFTKG T+D+W ++ + ++ K P Sbjct: 348 IIRLPGGVFNPYTGIKTNILFFTKG---------QPTEDIWFWEQPYPEGVVNYNKGRPM 398 Query: 394 TDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTD 439 E +G++ RTE ++ VA N + Sbjct: 399 QFEEFDALRDWWGDEATKFRTRTENPHAWKVTADHVATRGYNLDEK 444 >UniRef50_B7RYA8 N-6 DNA Methylase family protein n=2 Tax=Bacteria RepID=B7RYA8_9GAMM Length = 521 Score = 299 bits (765), Expect = 2e-79, Method: Composition-based stats. Identities = 123/530 (23%), Positives = 207/530 (39%), Gaps = 70/530 (13%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQ-NYVNELASLLFLKMCKETGQEAEYLPE------- 52 M +L K+ KL GGV+ + ++ L++ ++ E E Sbjct: 1 MITGELKGKIDKLWVEFWTGGVTNPLTVIEQITFLMYARLLDMNETSDEKRAERSGKTFN 60 Query: 53 --------GYRWDDLKS-RIGQEQLQFYRKMLVHLGEDDKK---LVQAVFHNVSTTITEP 100 RW + + E L+ R L + L + I +P Sbjct: 61 RRFTDEQQHLRWQNFRHIESADELLRVVRDELFPFFKTTSGEGSLFAEFMKDAQLMIQKP 120 Query: 101 KQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTII 160 + + ++ L G D GD+YE LL K T GQ+ TPR +I+ ++ Sbjct: 121 ALLRKAIDMVNDLPLSQG------DTKGDLYEYLLSKLT--TAGINGQFRTPRHIIRAMV 172 Query: 161 HLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLD----------------------D 198 ++ P+ + + DPA GTAGFL ++ + + D D Sbjct: 173 DMMDPKATDRICDPACGTAGFLSTTYEFMLEKYSSKDGTIREMVVDENGEEQEQVIYTGD 232 Query: 199 LDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI-EGNLDHGGAIRLGNTLGSDGENL 257 L D ++ F G + R+A MN ++H + E ++ + + G Sbjct: 233 LLADHREHVDRDMFHGFDFDATMLRIAAMNLVMHGVTEPDIHYQDTLSQGFIERFPQSAR 292 Query: 258 PKAHIVATNPPF-GSAAGTNITRTFVH--PTSNKQLCFMQHIIETLHPGGRAAVVVPDNV 314 +V NPPF GS ++ + T +L F+ I+ L GGRAAV+VPD V Sbjct: 293 EGFDLVLANPPFKGSLDEEDVDPEILRTVKTKKTELLFIALILRMLKVGGRAAVIVPDGV 352 Query: 315 LFEGGKG-TDIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCT 372 LF K +R+ +++ L I+ LP+G+F GV T V+ FTKG T Sbjct: 353 LFGSSKAHQQLRKSMIEDNQLEAIVSLPSGVFKPYAGVSTAVMIFTKG---------GQT 403 Query: 373 DDVWVYDLRTNMPSF-GKRTPFTDE---HLQPFERVYGEDPH-GLSPRTEGEWSFNAEET 427 D VW YDL+ + S KRTP + E L + E H ++ +W+ + Sbjct: 404 DRVWFYDLQADGFSLDDKRTPLSGEGSDDLPDLVEQWAEYSHLAAVGKSVEQWNDKTAKA 463 Query: 428 EVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDAD 477 + + E + L+ R+++ E + ++ + I +D Sbjct: 464 FLVEKTEIASNKYDLSIKRYKEVPYEKEDYEPPLEILKRLMELEVEIQSD 513 >UniRef50_A0QMK9 Type I restriction-modification system, M subunit n=2 Tax=Mycobacterium avium RepID=A0QMK9_MYCA1 Length = 495 Score = 298 bits (762), Expect = 4e-79, Method: Composition-based stats. Identities = 126/489 (25%), Positives = 206/489 (42%), Gaps = 63/489 (12%) Query: 6 LVAKLWKLCDNLRDG-GVSYQ-NYVNELASLLFLKMCKETGQEAEYLPEG--------YR 55 L A + D +R G++ + + +LA LLFLK + E E YR Sbjct: 19 LAAVIKSARDYMRKDAGLNGDLDRIPQLAWLLFLKAFDGLEENREITEENFRPAIEAPYR 78 Query: 56 WDDLKS----RIGQEQLQFYRKMLVHL--------GEDDKKLVQAVFHNVSTTITEPKQI 103 W D + R G L F L+ D + ++ AVF + + Sbjct: 79 WRDWAADPNGRTGDALLTFVNNELLPYLRGLSGTGSHDPRDVLAAVFKETYNRMLSGYLL 138 Query: 104 TALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL 163 +V+ ++ + N A +YE +L++ + +G+++TPRP+I+ I+ + Sbjct: 139 RDVVNKVNEI---NFASSDDIHTMAHLYESMLREMRDAAG-DSGEFYTPRPIIRFIVQQV 194 Query: 164 KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRR 223 P+ EV+ DPA GT GFL+EA ++ + L +H G+E P Sbjct: 195 DPRLGEVILDPACGTGGFLVEALEHLSPKVTTTAQL------RALHENLRGIEKKPLPFL 248 Query: 224 LALMNCLLHDIE-GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFV 282 L +MN +LH + N+ G A+ T S + ++ TNPPFG +I F Sbjct: 249 LGMMNLVLHGVGQPNITRGNALAESITQIS---KARRVDVILTNPPFGGEEEKSIQANFP 305 Query: 283 HPTSNKQ--LCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRL 340 + F+Q +I L GGR +VVP+ +LF GG G I++ L+ +C+LHTI+RL Sbjct: 306 ADKQTAETAWLFLQLVIRMLKDGGRCGIVVPNGLLFGGGVGARIKKQLLTECNLHTIVRL 365 Query: 341 PTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLR--TNMPSFGKRTPFTDEH 397 P G F + +N+LFF K T ++W Y++ + K P E Sbjct: 366 PDGAFAPYTDIPSNLLFFDKT---------GRTKEIWYYEISPPEGRKKYSKSKPMRFEE 416 Query: 398 LQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSE------ENKNTDQHLATSRWRKFS 451 + + S R E E ++ ++ ++ N N LA + Sbjct: 417 FADCQVWW-------SNRVENERAWRVPIADIEANDMYNLDLRNPNRGDDLAHRPPAELL 469 Query: 452 REWIRTAKS 460 E I T +S Sbjct: 470 AELIDTERS 478 >UniRef50_UPI0001B4AB1B type I restriction-modification system methylation subunit n=1 Tax=Bacteroides fragilis 3_1_12 RepID=UPI0001B4AB1B Length = 512 Score = 297 bits (761), Expect = 6e-79, Method: Composition-based stats. Identities = 87/490 (17%), Positives = 188/490 (38%), Gaps = 77/490 (15%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEY----------- 49 + ++ + LW +LR G + Y + LLF K + E Sbjct: 15 ITLDEFKSFLWAAATHLR-GQIDAAGYKEYIFPLLFFKRISDVYDEQFEGFVCEGGVEYA 73 Query: 50 ----------LPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKL---------VQAVF 90 +PEG W D++ + + + + + + + ++ +F Sbjct: 74 GKQVEDLPIRIPEGAHWRDVRE-VTENVGNKLVEAFIAIEQANPAKEMDGRKIGGLEGIF 132 Query: 91 HNVSTTITEPKQITALVSNM--DSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQ 148 + K ++++++ D + D+ G YE L+ K A++ + A + Sbjct: 133 GPKDGWTNKAKMPDSIITSLIEDFSKYTLSLKACPADEMGQAYEYLVGKFADDAGNTAQE 192 Query: 149 YFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQI 208 ++T R +++ + +L+PQP E + DP G+ G L++ Y++++ ++ + Sbjct: 193 FYTNRTVVQLMAEILQPQPNESIYDPTCGSGGMLVKCLDYLRNKGDEWQSVQ-------- 244 Query: 209 HRAFIGLELVPGTRRLALMNCLLHDIE-GNLDHGGAIRLGNTLGSDGENLPKAHIVATNP 267 G E+ T +A MN L+ +E ++ + L DG +L K IV NP Sbjct: 245 ---VFGQEVNGLTSSIARMNLYLNGVEDFSIVCADTLEHPAFL--DGSHLRKFDIVLANP 299 Query: 268 PFGSAAG-------TNITRTFV--HPTSNKQLCFMQHIIETLHP-GGRAAVVVPDNVLFE 317 P+ R F+ P F+QHI+ +++ GR A+++P +LF Sbjct: 300 PYSIKEWNREKFMNDKWGRNFLGTPPQGRADYAFIQHILASMNEKNGRCAILLPHGILFR 359 Query: 318 GGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWV 377 + DIR+ L+ L ++ L +FY ++ +LF K ++ D + Sbjct: 360 -QEEKDIRKSLVLSDSLEAVIGLGPNLFYNSPMEACILFCNKNKP------QHLKDKIIF 412 Query: 378 YDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKN 437 + + + ++H++ + + + E D + N Sbjct: 413 INAINEVTRKNGESYLEEKHIKKILSAFYNNSDIP------------QFKETIDINDICN 460 Query: 438 TDQHLATSRW 447 + ++ ++ Sbjct: 461 NEYDISIQKY 470 >UniRef50_C3NN83 N-6 DNA methylase n=1 Tax=Sulfolobus islandicus Y.N.15.51 RepID=C3NN83_SULIN Length = 521 Score = 297 bits (759), Expect = 9e-79, Method: Composition-based stats. Identities = 137/549 (24%), Positives = 226/549 (41%), Gaps = 75/549 (13%) Query: 4 NDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYL------------P 51 N +LW + + R V Y+ E + L FL++ E E + P Sbjct: 10 NSFGDELWNIANIFRSDIVKPTEYLEEFSYLFFLRLFDEQEIYQENIAKELGEDYKSTIP 69 Query: 52 EGYRWDDL--------KSRIGQEQLQFYRKMLVHLGE----------DDKKLVQAVFHNV 93 YR+ + +S+ + +F KM + L +D+ +++ +F N Sbjct: 70 SEYRFFNWACDPRNYARSKGFKTVTEFLDKMFLDLANLPDTGDPKIDEDRSIIKKIFSNK 129 Query: 94 STTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153 + + + ++ + L G G+ D G YE L+ K + GQ+FTPR Sbjct: 130 TRRMQNDNTVIQVIDRLRLLKL-PGDEGRKFDALGRGYEFLMYKLGQQGN--YGQFFTPR 186 Query: 154 PLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTND--LDDLDGDTQDFQIHRA 211 ++ ++ ++ P P EV+ DPAAGT GFL++A YVK + ++ D + + ++ Sbjct: 187 NIVSFMVRIIDPNPGEVILDPAAGTGGFLVKAFEYVKQKIERQITNEADKEIKIRELKHN 246 Query: 212 FIGLELVPGTRRLALMNCLLHD-IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFG 270 G+E P +L LMN LH N ++ A+ G KA ++ TNPPFG Sbjct: 247 LYGIEKAPDVFKLGLMNLRLHGDGSSNFENLDALSG----SVQGAYKEKADVITTNPPFG 302 Query: 271 SAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMD 330 T F + + F+Q I++ + PGGR A V+ + +LF IRRDL+D Sbjct: 303 -PFSGEPTGNFKYKFKRFETYFIQAIMDMVKPGGRVATVMLEGLLFNENYEG-IRRDLVD 360 Query: 331 KCHLHTILRLPTGIFYAQG-VKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGK 389 K + + LP G+F KT++L F + PN+ + TD V +++ ++ Sbjct: 361 KFKIEAVFSLPAGVFLPYSAAKTDILVFRR-----PNKGEKTTDKVLFFNIESDGYELKP 415 Query: 390 -RTPFTDEHLQPFERVYGEDPHGLS---PRTEGEWSFNAEETEVADSEENKNTDQHLATS 445 R P D + G+ P L GE E+ V D EE + D L + Sbjct: 416 TRKPIGDCDKKGDIDGCGDLPLALEIYQKFKRGEEIPQTEQYFVVDVEEIRKHDYRLDIN 475 Query: 446 RWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALMR 505 +RK E + +P L L A+ L+ L + Sbjct: 476 VYRKVRLE-----------------------EENADPKQLIELMETNLSDAMKRLNELKK 512 Query: 506 ELGASDEAD 514 LG DE + Sbjct: 513 ILGIGDENE 521 >UniRef50_Q5HSN6 Type I restriction-modification system, M subunit n=37 Tax=Proteobacteria RepID=Q5HSN6_CAMJR Length = 494 Score = 297 bits (759), Expect = 1e-78, Method: Composition-based stats. Identities = 120/501 (23%), Positives = 216/501 (43%), Gaps = 61/501 (12%) Query: 6 LVAKLWKLCDNLR-DGGVS-YQNYVNELASLLFLKMCKETGQE------------AEYLP 51 + K+ K+ D LR D G+S +Y ++ +LFLK + L Sbjct: 1 MQNKVDKITDILRRDDGISGAMHYTEQIGWILFLKFLDDYETNLKDLAFLDGKDYKSILQ 60 Query: 52 EGYRWDDLKS------------RIGQEQLQFYRKMLVHLGEDDKK---------LVQAVF 90 E + W + G + L+F K L ++ K + +F Sbjct: 61 EKFSWSVWAAPKKDGKLDVKNALSGSDLLEFVNKELFPYLKNFKNNDDFKSIEYKIGGIF 120 Query: 91 HNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYF 150 + I + +++ +D + + G++YE LL+ ++ +G+++ Sbjct: 121 EFIDNRIANGHTLREVINIIDEISF---NKEDEVFALGEVYEKLLKDMGSD-GGNSGEFY 176 Query: 151 TPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYV---KSQTNDLDDLDGDTQDFQ 207 TPRPLIK ++ ++ P+P+E + DP+ G+ GFL+E+ ++ +L + +F Sbjct: 177 TPRPLIKAMVEVIDPKPKERIYDPSCGSCGFLVESFLHILYKDRTKGKKANLSVEELEFL 236 Query: 208 IHRAFIGLELVPGTRRLALMNCLLHDIE-GNLDHGGAIRLGNTLGSDGENLPKAHIVATN 266 + A G E P + + +MN +LH+++ N+ + N +D K ++ N Sbjct: 237 KNDALFGKEKTPLSYAMGVMNMILHEVKSPNIIKTNTL---NKKITDITQSEKYEVILAN 293 Query: 267 PPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLF-EGGKGTDIR 325 PPFG I F ++ +L F+QHI+++L GR A++VP+ VLF ++ Sbjct: 294 PPFGGKEKEQIQENFPIKSNATELLFLQHILKSLKNNGRCAIIVPEGVLFQNSNAFVSVK 353 Query: 326 RDLMDKCHLHTILRLPTGIFYAQG-VKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNM 384 +DL+D +L +L LP+G+F VKTNVLFF+KG D V+ Y+L Sbjct: 354 KDLLDDFNLECVLSLPSGVFLPYSAVKTNVLFFSKGKKCICEG-----DGVYYYEL-IPP 407 Query: 385 PSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLAT 444 K P H + F + Y E + + +++ N ++ L T Sbjct: 408 YKLTKNKPLEYTHFKEFLKCYKERKITANSWLVSKKELEERNYDLSAKNPNVKEEKILKT 467 Query: 445 SRWRKFSREWIRTAKSDSLDI 465 S E I + ++L I Sbjct: 468 S-------EEILNSLEENLKI 481 >UniRef50_D1X0A9 N-6 DNA methylase n=2 Tax=Bacteria RepID=D1X0A9_9ACTO Length = 867 Score = 296 bits (758), Expect = 1e-78, Method: Composition-based stats. Identities = 128/494 (25%), Positives = 211/494 (42%), Gaps = 68/494 (13%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQ-NYVNELASLLFLKMCKE--------TGQEAEYLP 51 M +L +K+ ++ D GG+S + ++ LLF+K E + A+ P Sbjct: 1 MITGELKSKVGRVWDAFWSGGISNPLEVIEQITYLLFIKRLDEIQIRKDNRASRTAKPDP 60 Query: 52 E--------GYRWDDLKSRIGQEQLQFYRKMLVHLGED---DKKLVQAVFHNVSTTITEP 100 + RW + K+ + + + + D + TI P Sbjct: 61 DPLFAEDQQELRWQNFKACDPEVMYRIVEQGVFPYLRAMGGDGSTYSHHMRDARFTIPGP 120 Query: 101 KQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTII 160 + +V +DS+ +S D GD+YE LL K A ++ GQ+ TPR LI+ ++ Sbjct: 121 NLLAKVVELLDSIAM------ESSDTAGDIYEYLLAKIATSGRN--GQFRTPRHLIRLMV 172 Query: 161 HLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPG 220 + +P+P + V DPA GTAGFL+++ YVK + LD + Q F G + Sbjct: 173 EMTQPKPDDEVCDPACGTAGFLVQSASYVKREHAKAL-LDVEQQAHFNASMFHGFDFDST 231 Query: 221 TRRLALMNCLLHDIEGNLDHGGAIRLGNTL-GSDGENLPKAHIVATNPPFGSAAGTNITR 279 R+ MN LLH IE IR ++L S + ++ NPPF + T Sbjct: 232 MLRIGSMNMLLHGIE-----NPDIRYRDSLVESSAGEAERYSLILANPPFAGSLDYESTA 286 Query: 280 TFVHP---TSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKG-TDIRRDLMDKCHLH 335 + P T +L F+ + L PGGRAAV+VPD VLF K ++RR L++ L Sbjct: 287 ADLLPVVKTKKTELLFLALFLRLLKPGGRAAVIVPDGVLFGSTKAHKELRRTLVEDHKLD 346 Query: 336 TILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSF-GKRTPF 393 +++LP+G+F GV T +L FT+ D TD+VW YD++ + S +R P Sbjct: 347 GVVKLPSGVFKPYAGVSTAILLFTR-------TDSGGTDNVWFYDVQADGFSLDDRRNPL 399 Query: 394 TDE--------------------HLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSE 433 E +L + + R E SF ++++ Sbjct: 400 LPEDRLGVRPAAGSLSEEEHTKNNLPDVLSRWFDRGGSERNRARTEQSFCVPKSDIVAQG 459 Query: 434 ENKNTDQHLATSRW 447 + + +++ R+ Sbjct: 460 YDLSLNRYAERPRY 473 >UniRef50_Q60297 Putative type I restriction enzyme MjaXP M protein n=4 Tax=Euryarchaeota RepID=T1MH_METJA Length = 558 Score = 294 bits (753), Expect = 5e-78, Method: Composition-based stats. Identities = 102/547 (18%), Positives = 189/547 (34%), Gaps = 91/547 (16%) Query: 5 DLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLK----MCKETGQEAE------------ 48 + +LWK+ D LR + Y + L+FL+ E +E E Sbjct: 47 EFENQLWKVADKLRK-KMEVHQYKYVVLGLIFLRALTCRFYERRKEIEEELSNPNSELYT 105 Query: 49 ----------------------YLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDD--KK 84 YLP+ RWD + + + + E+ + Sbjct: 106 EDPELRKMILEDEDFYLSEGVLYLPKETRWDYFVENVMSPNIGEIIDTAIEILEEKYPDR 165 Query: 85 LVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKS 144 L + + + + + L++ + + G + +D FG +YE L K Sbjct: 166 LKDVIPKIYAQSPLDNHDYSYLINKFSEISF--GKEHRVKDVFGRIYEYFLGKFTEVEGK 223 Query: 145 GAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQ 204 G+++TPR L K I+ +L + + DPA G+ GF + A ++ + D+++L Sbjct: 224 LGGKFYTPRSLTKLIVDVLDVK-GGSIFDPACGSGGFFVSALEKLEREGIDINEL----- 277 Query: 205 DFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVA 264 + G + P RL MN ++ EG+ IR+ ++ D V Sbjct: 278 ------SIYGQDSDPMAYRLTKMNLIIRGAEGD------IRIDDSYHDDKFMDMTFDYVV 325 Query: 265 TNPPFGSAAGT-------------NITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 311 NPPF + + V P N ++ H I P G+A V+ Sbjct: 326 ANPPFNDSEWDANRIKPDDPRLRIGNKKVPVPPNGNANYMWILHFIYHTAPNGKAGFVMA 385 Query: 312 DNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNC 371 + L G +IR+ +++ ++ I+ P +FY + ++ F K Sbjct: 386 NGALSAGNVEGEIRKAIIENDLVYGIVACPPKLFYNVSLPVSLWFIRKEKPDYMK----- 440 Query: 372 TDDVWVYDLRTNMPSFGKR-TPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVA 430 V + + +R T+EH++ + G E F +VA Sbjct: 441 -GKVLFINAKNLYKQISRRQNILTEEHIKKIVDKFRMFESGEDEDKINELGF----AKVA 495 Query: 431 DSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAM 490 +E L R+ E D + + S + L + + + Sbjct: 496 TIDEIAKNGYVLTPGRYVGVKIED------DGIPFEVKMKEYSEELKKLLDEEEKLRNKV 549 Query: 491 GELVQAL 497 E++ AL Sbjct: 550 KEILDAL 556 >UniRef50_A5GB18 N-6 DNA methylase n=2 Tax=Bacteria RepID=A5GB18_GEOUR Length = 549 Score = 294 bits (753), Expect = 5e-78, Method: Composition-based stats. Identities = 135/577 (23%), Positives = 231/577 (40%), Gaps = 100/577 (17%) Query: 3 NNDLVAKLWKLCDNLRDGGVSYQ-NYVNELASLLFLKMCKETGQEAEY------------ 49 N DL KL + D L GGV+ Y+ +++ L++LK+ E E Sbjct: 2 NADLRRKLDHITDTLWAGGVTNPVTYIEQISFLIYLKLLDEEETSRELRVRLGAGNSRFL 61 Query: 50 ---LPEGYRWDDLKSRIGQEQLQFYRKMLVHLGE---DDKKLVQAVFHNVSTTITEPKQI 103 E +RW + + G E F R + D+ V F + I E + Sbjct: 62 FPDQAERFRWSKWRFKSGIELNDFIRGEVFPYMASLVKDEPQVAEYFRDARLEINEVDVL 121 Query: 104 TALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL 163 +V +DS+++ D GD++E LL + GQ+ TP+ + ++ ++ Sbjct: 122 KQVVDELDSIEF----RKLGPDVKGDIFEYLLTHLGQSALN--GQFRTPKQIRSFMVAMV 175 Query: 164 KPQPREVVQDPAAGTAGFLIEADRYVKSQTND-------------------LDDLDGDTQ 204 P+ + + DPA GTAGFLI+A Y+ ++ ++ LD+ Sbjct: 176 DPEFGDTIDDPACGTAGFLIDAVEYLLAKYSENPQEMPIYGEEWLERKGLTLDEAKKQMP 235 Query: 205 DFQIHR---------------AFIGLELVPGTRRLALMNCLLHDI-EGNLDHGGAIRLGN 248 + Q +R + G ++ R+++MN +LH I + L + Sbjct: 236 NLQTYRKGPGEKIPDWGILEASIYGTDVSRQMMRISMMNLVLHGIGKARLKRANVLSEMG 295 Query: 249 TLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNK-QLCFMQHIIETLHPGGRAA 307 L D N K + +NPPF + R + S K +L F+ ++E+L PGGR A Sbjct: 296 GLTEDDLN-RKYKVSLSNPPFAGMLPKDSIRHDLPTNSKKSELLFLGLMMESLAPGGRCA 354 Query: 308 VVVPDNVLFEG-GKGTDIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANP 365 VVVP+ LF G ++R+ L+ + ++ LP G+F GVKT+VL F + P Sbjct: 355 VVVPEGALFGSTGAHVELRKKLLQDFEVLAVVSLPAGVFKPYAGVKTSVLVFRR-PANPP 413 Query: 366 NQDKNCTDDVWVYDLRTNMPSFGK----RTPFTDE--HLQPFERVYG-------EDPHGL 412 Q K T VW Y+++ + K P T E + + P G+ Sbjct: 414 EQGKPATAKVWFYEIKNDGYDPDKITGGGRPETPEQNDIPTMLVAWEGYKAGKFSQPPGV 473 Query: 413 SPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKD 472 T + + AD E ++D +L SR++ E + Sbjct: 474 EAGTVLKPGSPDPKCWWADYERIADSDANLGASRYKPTVGEDL----------------- 516 Query: 473 SIDADSLPEPDVLAAEAMGELVQALSELDALMRELGA 509 S +P L + + + L+ L++E+G+ Sbjct: 517 -----SDEDPAELIHDVLMLEKNLVDGLEKLLQEVGS 548 >UniRef50_C2E8R1 Site-specific DNA-methyltransferase n=15 Tax=Firmicutes RepID=C2E8R1_9LACO Length = 556 Score = 294 bits (752), Expect = 6e-78, Method: Composition-based stats. Identities = 105/597 (17%), Positives = 204/597 (34%), Gaps = 140/597 (23%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKE---TGQEAEYLPE------ 52 D+ K+W + + LR G + Y + + +F + E Q P+ Sbjct: 3 TAEDIKNKIWAMANELR-GNMDASEYRDYILGFMFYRFLSEHQLNWQSENEFPDLAGKKL 61 Query: 53 ---------------------------------GYRWDDLKSRIGQEQLQF--YRKMLVH 77 + W + R+ +++M Sbjct: 62 EKINQRYAKEAIGDDLTEYLKDIADALGYAIEPKFTWISIVERVNDRSFAPSEFQEMFDK 121 Query: 78 LGEDDK------KLVQAVFHNVS--------TTITEPKQITALVSNMDSLDWYNGAHGKS 123 + K VF +++ +T K + +V+ ++ +++ + A Sbjct: 122 FANNAKLNPNAVNDFTGVFSDINLGNSRLGDSTNVRAKTLLDIVNLVNEIEYKDEAGH-- 179 Query: 124 RDDFGDMYEGLLQKNANETKSGAGQYFTPRPLI----KTIIHLLKPQPRE-VVQDPAAGT 178 D GD+YE L+ + A G++FTP + K I + P+ V D A G+ Sbjct: 180 -DILGDIYEYLIAEFAGNAGKKGGEFFTPHQVSLVLAKIIAANMDPEIEHPEVYDFACGS 238 Query: 179 AGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNL 238 L+ + D+L + + G EL +A MN ++H ++ + Sbjct: 239 GSLLLTVE----------DELQIPGSQKRRRVRYYGQELNTTNYNMARMNLMMHGVDYQM 288 Query: 239 DHGGAIRLGNTLGSDG---------ENLPKAHIVATNPPFGSAAGTNITR--------TF 281 +R +TL +D ++ V NPP+ S + + Sbjct: 289 M---DLRNADTLENDWPDGVGNDNIDHPHFFDAVVANPPYSSRWDNSANKIKDARFKDYG 345 Query: 282 VHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLP 341 + P + F+ H + L+ G A+V+P VLF G IR+ L++K + I+ LP Sbjct: 346 LAPKTKADYAFLLHGLYHLNSRGTMAIVLPHGVLFRGNAEGKIRKALLEKNQIDAIIGLP 405 Query: 342 TGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTN--MPSFGKRTPFTDEHLQ 399 G+F++ G+ T ++ K DV D K+ +E + Sbjct: 406 AGLFFSTGIPTIIMVLKKNKT---------NKDVLFIDASGEDHYEKIKKQNFLREEDIN 456 Query: 400 PFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAK 459 Y + + VA +E K D +L R+ Sbjct: 457 LIIDTYKKRED------------VDKYAHVASIDEIKENDYNLNIPRY------------ 492 Query: 460 SDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALMRELGASDEADLQ 516 + +++ ID L E ++ E+ ++ L ++M+EL + D ++ Sbjct: 493 -----VDTFEEEPPID---LGELTQEISQTDQEIAESEQNLLSMMKELTSDDPKMME 541 >UniRef50_C7NP01 N-6 DNA methylase n=2 Tax=Halobacteriaceae RepID=C7NP01_HALUD Length = 493 Score = 292 bits (747), Expect = 3e-77, Method: Composition-based stats. Identities = 95/530 (17%), Positives = 189/530 (35%), Gaps = 77/530 (14%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQ--------------- 45 + ++L + L+K D +RD V Y + + L++ K + + Sbjct: 3 LTLDELDSHLFKCADIIRDA-VDSTEYKDFILPLVYYKTISDNFEVQREKYVEEYGDEHA 61 Query: 46 ------EAEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVS--TTI 97 + Y+P+GY WDDL++ + + + L E + V+ VF Sbjct: 62 NRPNIYDVPYVPDGYLWDDLRA-VNENVDEAINDAFDALREANDGEVEGVFRADYVAEDA 120 Query: 98 TEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIK 157 ++T L+ ++ ++D N D G+ Y L++ A E GQ+FTP +++ Sbjct: 121 LTDDRLTRLIEHLSTIDLDN--DSVPPDMLGEAYMDLVRHFAEEEGKSGGQFFTPPHIVE 178 Query: 158 TIIHLLKP-QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLE 216 ++ LL P + + DP G+ G L+EA + + + F G E Sbjct: 179 LMVRLLAPFEDGDTFHDPTVGSGGMLVEAATHYRDEQGG----------DPSKLTFTGQE 228 Query: 217 LVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTN 276 + P +A MN +H + G ++ ++ ++ L K V N PF + + Sbjct: 229 INPDIAAIAKMNLSIHGLSGRIEREDSLLRPQF--TENGELTKFDYVLANFPFSADWQKD 286 Query: 277 ITRTF----------VHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRR 326 + + F+ H+ E L+ G+AA+V+P VLF + R Sbjct: 287 ELQDDTYGRFDWHEKLPRADRGDYAFIMHMAEQLNETGQAAIVIPHGVLFRKH-ESRYRE 345 Query: 327 DLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDL--RTNM 384 +++ + I+ LP +F + + +L ++ +V Sbjct: 346 PMLENDLVEAIVGLPENLFQNNSIPSAILLLN------TDKPAEREGEVQFIHAADEAFY 399 Query: 385 PSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLAT 444 + TDE + + + W+ + EE + D +L Sbjct: 400 RELSNQNELTDEGVAHVVENFRD------------WTTEERVSRTVSIEEIRENDYNLNI 447 Query: 445 SRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELV 494 + + T + +D++ E + + M L Sbjct: 448 ALYVD------TTEPEEEIDVAEELATLRELQAERDEIEARMDQHMEALN 491 >UniRef50_A6TNL6 Type I restriction-modification system, M subunit n=5 Tax=Firmicutes RepID=A6TNL6_ALKMQ Length = 858 Score = 292 bits (746), Expect = 3e-77, Method: Composition-based stats. Identities = 111/579 (19%), Positives = 206/579 (35%), Gaps = 129/579 (22%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAE------------ 48 + + ++ +LW+ + LR G + Y + + L+F K + E Sbjct: 2 ITSEEIKRRLWEGANELR-GSMDASRYKDYMLGLMFYKFLSDKTLETFRITAGVEKVTEK 60 Query: 49 ---------------------------YLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGED 81 Y+ Y + I + +K+ L Sbjct: 61 ELVEEYIKAKKEYGEALEKMIQDVLGYYVSPEYLYQIWLKDINDGNFE-VQKVADSLNNF 119 Query: 82 DKKL--------VQAVFHNVSTTITEP----------KQITALVSNMDSLDWYNGAHGKS 123 ++ + + +F + + +T+ I AL+ L N + Sbjct: 120 ERSIVSSGEVNDFKGLFSSSTLDLTDTALGSNLHERSNNIKALILLFSDL---NMVALQK 176 Query: 124 RDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL-KPQPREVVQDPAAGTAGFL 182 D GD YE L+ + A E+ AG+++TP + + + ++ K + + DP G+ L Sbjct: 177 GDILGDAYEYLIGQFAMESGKKAGEFYTPHRVSEVMAQIVAKTTEIKSIYDPTVGSGSLL 236 Query: 183 IEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGG 242 + +++ ++D Q ++ G E T L MN LLH + Sbjct: 237 LTVKKHL-------------SKDRQKDLSYYGQEKNTATYNLTRMNLLLHGVRPEKM--- 280 Query: 243 AIRLGNTLGSDGENLP-------KAHIVATNPPFGSAAGTN-----ITRTF-----VHPT 285 I+ G+TLG+D P + V NPP+ + F + P Sbjct: 281 TIKNGDTLGNDWPEDPENPNEGVQFDAVVMNPPYSAQNWNKAGLKVSDPRFEIGGTLPPD 340 Query: 286 SNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIF 345 S F+ H + L G +V+P VLF G +IR+ L+DK + ++ LP+ +F Sbjct: 341 SKGDYAFLLHGLYHLGTKGTMGIVLPHGVLFRGSSEGEIRKKLIDKNQIDAVIGLPSNLF 400 Query: 346 YAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVY 405 G+ ++ K +N +D V + D N GK+ + + VY Sbjct: 401 TNTGIPVAIIILKKN--------RNISDPVLMIDASNNFIKVGKQNVLQERDIAQIVDVY 452 Query: 406 GEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDI 465 +S +S A E+ +E N N +++ +S DI Sbjct: 453 ------ISKDEIAGFSHLACLKEIIQNEYNMNIPRYV----------------QSLEEDI 490 Query: 466 SWLKDKDS---IDADSLPEPDVLAAEAMGELVQALSELD 501 + D I A+++ E +L L Q++ E+ Sbjct: 491 AHDVDAHLFGGIPAENINELKILHELVPEVLEQSIEEIR 529 >UniRef50_D2NY13 Type I restriction enzyme M protein n=5 Tax=Listeria RepID=D2NY13_LISMO Length = 529 Score = 291 bits (745), Expect = 4e-77, Method: Composition-based stats. Identities = 99/568 (17%), Positives = 195/568 (34%), Gaps = 111/568 (19%) Query: 3 NNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA-EYLPEGYRWDDLKS 61 + + K+W + + R G + Y + + +LF K E + G W+ + S Sbjct: 4 STEQKTKMWAMLNQTR-GQIGLTAYKDYIFGILFYKYLSEKATHWLNGVLRGENWESVYS 62 Query: 62 RIGQEQLQFYRKMLVH-----------------------------------LGEDDKKLV 86 + + L + +K L + + + K Sbjct: 63 QDSVKALNYMKKNLGYAIQPNEFFVDWKKAIDRDRFNIGMMTDTFTHFNQQIAFEAKNDF 122 Query: 87 QAVFHNVSTTITE-----PKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANE 141 + +F + + + + ++S ++ L S D D+YE L+ + A Sbjct: 123 EGIFDGMRFDSADLGANAQARASVMISMIELLSSPEFDLSGSNDTVSDIYEYLVAQFATV 182 Query: 142 TKSGAGQYFTPRPLIKTIIHLL----KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLD 197 S GQY+TP+ + + +L + + + DP G+ L+ Y+K+ Sbjct: 183 LASDMGQYYTPKEISNVMARILTFGREDMEKFSIFDPTVGSGSLLLTTASYMKNSGRRGV 242 Query: 198 DLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN---LDHGGAIR--LGNTLGS 252 + G E RL+ MN ++H IE N ++H + + + Sbjct: 243 ------------IKYYGQEKDATPYRLSRMNLMMHGIEYNDININHADTLESDWPDGVVE 290 Query: 253 DGENLPKAHIVATNPPFGSAA-------GTNITRTFVHPTSNKQLCFMQHIIETLHPGGR 305 + V NPP+ + V P + F+ H + L GR Sbjct: 291 GKDTPRMFDAVMANPPYSAHWNNKDREDDPRWREYGVSPKTKADYAFLLHCLYHLEDNGR 350 Query: 306 AAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANP 365 A+++P VLF G IR+ L+DK + I+ P +F + V+ K + + Sbjct: 351 MAIILPHGVLFRGASEGRIRKALIDKHQIEAIIGFPDKLFLNTSIPVCVVILRKNRIES- 409 Query: 366 NQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAE 425 D+ D K+ E ++ + R E E + Sbjct: 410 --------DILFVDASKGFEKIKKQNNLRSEDVEKIVDT-------VINRKEIE-----K 449 Query: 426 ETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVL 485 + VA +E K D +L R+ + +++++ID +L V Sbjct: 450 YSHVATLDEIKENDYNLNIPRY-----------------VDTFEEEEAIDLVALGNEMVT 492 Query: 486 AAEAMGELVQALSELDALMRELGASDEA 513 ++ +A ++ L+ EL + + Sbjct: 493 LN---ADIKKAETDFLGLLDELAVTPDT 517 >UniRef50_Q8DGT5 Type I site-specific deoxyribonuclease modification subunit n=6 Tax=Bacteria RepID=Q8DGT5_THEEB Length = 543 Score = 291 bits (745), Expect = 4e-77, Method: Composition-based stats. Identities = 114/590 (19%), Positives = 193/590 (32%), Gaps = 128/590 (21%) Query: 1 MNNND---LVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA---------- 47 MNN D L LW + D LR G ++ ++ + + + LFL+ + +EA Sbjct: 1 MNNQDQIRLGKTLWAIADTLR-GAMNADDFRDYMLAFLFLRYLSDNYEEAAKRELGSDWP 59 Query: 48 ---------------EYLPE-------------------GYRWDDLKSRI---GQEQLQF 70 E P+ Y W + E L Sbjct: 60 QLREDDRRSPLAVWYEENPDDIEPFENMMRRKVHYVVKPEYLWSSIAEMARTQDAELLHT 119 Query: 71 YRKMLVHLG-EDDKKLVQAVFHNVSTTITEPKQITA-----LVSNMDSLDWYNGAHGKSR 124 +K + E Q +F ++ + + L + + + + R Sbjct: 120 LQKGFKFIENESFSSSFQGLFSEINLDSDKLGKTYKQRNERLCTIIGRIAEGLAEFPQER 179 Query: 125 DDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPRE----------VVQDP 174 D GD YE L+ + A + AG+++TP+P+ + ++ ++ V D Sbjct: 180 DLLGDAYEYLIGQFAAGSGKKAGEFYTPQPISSILSAIVSLDAQDPANGKREKLGKVYDF 239 Query: 175 AAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI 234 A G+ L+ R + G E T LA MN LLH + Sbjct: 240 ACGSGSLLLNVGRRMGRYGVGK---------------LYGQEKNITTYNLARMNMLLHGL 284 Query: 235 ---EGNLDHGGAIRLGNTLGSDGENLPK--AHIVATNPPFGSAAGTN--------ITRTF 281 E + HG ++ L + K V NPPF Sbjct: 285 KDTEFEIFHGDSLLNEWLLLREENPAKKIEFDAVVANPPFSLRWEPGEELAEDFRFKDYG 344 Query: 282 VHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLP 341 + P S F+ H LH G A+++P VLF G IR+ L+ ++ T++ L Sbjct: 345 LAPKSAADFAFLLHGFHFLHKEGTMAIILPHGVLFRGNVEEKIRKKLLLDGNIDTVIGLA 404 Query: 342 TGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPF 401 +FY+ G+ +L K DDV + ++ EH+ Sbjct: 405 PNLFYSTGIPVCILVLKKCKKF---------DDVLFINAAELYEKGKRQNQLLPEHIDKI 455 Query: 402 ERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSD 461 Y E + + EE + D +L +R+ Sbjct: 456 VETY----QFRREVKEELDNGALFVSRRVSMEEIEKNDFNLNITRY-------------- 497 Query: 462 SLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALMRELGASD 511 +S K + ID L + AE ++ QA + ++ELG S+ Sbjct: 498 ---VSTAKSEPEID---LQQVHQELAELTRKIEQARDRHNEFLKELGLSE 541 >UniRef50_Q3AQE5 Type I restriction modification enzyme methylase subunit n=10 Tax=Bacteria RepID=Q3AQE5_CHLCH Length = 579 Score = 291 bits (744), Expect = 5e-77, Method: Composition-based stats. Identities = 126/554 (22%), Positives = 212/554 (38%), Gaps = 106/554 (19%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQ-NYVNELASLLFLKMCKETGQE-------------- 46 NN +L +K+ +L + GG+S + ++ LLF+K E + Sbjct: 4 NNPELKSKIEQLWNKFWAGGISNPLTAIEQITYLLFMKRLDELDLKKQADAEWTGEPYIS 63 Query: 47 ---AEYLPEGYR------------------------------WDDLKSRIGQEQLQFYRK 73 E++P YR W + K +E L + Sbjct: 64 RFAGEWIPPEYRAKLSEQDTVEEQQKKQAEATKFAIAKQTLRWSEFKHMQAEEMLLHVQS 123 Query: 74 MLVHLGEDDKKL---VQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSR-----D 125 + +D N I +P + V +D + + + D Sbjct: 124 KVFPFLKDMNGAESNFTHHMKNAVFIIPKPSLMVEAVKTVDEIFEIMEKDSQEKGQAFQD 183 Query: 126 DFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEA 185 GD+YE LL + A K+ GQ+ TPR +IK + L++PQ + + DPA GTAGFL+ A Sbjct: 184 IQGDVYEMLLSEIAQAGKN--GQFRTPRHIIKLMTELVQPQLAQRIGDPACGTAGFLLGA 241 Query: 186 DRYVKSQ-------------------------------TNDLDDLDGDTQDFQIHRAFIG 214 +Y+ +Q + +T + + G Sbjct: 242 YQYIVTQLAIKTSDHFRGVTNMTDRGAHTFQPDEDGFVRTSVASGLTETAQAILQSSLYG 301 Query: 215 LELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPF-GSAA 273 ++ RL LMN ++H I+ I +TL + HIV NPPF GS Sbjct: 302 YDIDSTMVRLGLMNLMMHGID-----EPNIDYKDTLSKSYNEEAEYHIVMANPPFTGSID 356 Query: 274 GTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKG-TDIRRDLMDKC 332 +I T+ +L F+++I L GG A V+VP VLF G ++R+ L+++C Sbjct: 357 KGDINENLTLSTTKTELLFVENIYRLLKRGGTACVIVPQGVLFGSGTAFKNLRQLLVERC 416 Query: 333 HLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSF-GKR 390 L ++ +P+G+F GV T +L FTK + + T VW YD++++ S KR Sbjct: 417 ELKAVITMPSGVFKPYAGVSTAILLFTKVYESKEKVRQPATHQVWFYDMQSDGYSLDDKR 476 Query: 391 TPFT-DEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRK 449 T LQ + R S ++ + + L+ SR+++ Sbjct: 477 TKLEGYGDLQEIVAKFH-------ARNPATNSDRTQKCFFVPYADLEAEGYDLSISRYKE 529 Query: 450 FSREWIRTAKSDSL 463 E + ++ Sbjct: 530 DVFEEVHYEAPSAI 543 >UniRef50_C8W944 N-6 DNA methylase n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8W944_ATOPD Length = 506 Score = 290 bits (743), Expect = 7e-77, Method: Composition-based stats. Identities = 120/525 (22%), Positives = 218/525 (41%), Gaps = 62/525 (11%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVS-YQNYVNELASLLFLKMCKETGQEAEYLPE------- 52 M +K+ + + +GG++ Q + +L L+F++ + E+E + E Sbjct: 1 MITGATKSKVDDVWQRMWEGGITNPQEVITQLTYLMFIRSLDDKELESERMEELGIPQEY 60 Query: 53 ---------GYRWDDLKSRIGQEQLQFYRKMLVHLGE--DDKKLVQAVFHNVSTTITEPK 101 RW +K+ ++ L+ R + + D + + I P+ Sbjct: 61 LFPQTSEGQEMRWCSIKNMAPEKMLEAIRDKVFPFIKTLHDDTPFARSMRDATFGINNPR 120 Query: 102 QITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIH 161 + VS +DSL DD GD+YE +L K T GQ+ TP+ + ++ Sbjct: 121 TLQKAVSGIDSL---MNDFENDMDDLGDLYEYMLSKL--STAGTNGQFRTPKHIRDMMVA 175 Query: 162 LLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLD-------------DLDGDTQDFQI 208 ++ P+P E + DPA GTAGFLI A ++++ + D D DG+ Sbjct: 176 MVDPRPGERICDPAMGTAGFLISAADHLRNDSAMKDDDWTVFAGEAAEKDADGNVVAEGR 235 Query: 209 HRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPP 268 H+ F G E R++ MN +LH I I+L +++ K +V NPP Sbjct: 236 HQ-FSGGETDQTMFRISAMNLMLHGIS-----QPDIKLVDSVSKQNTTSDKYDLVLANPP 289 Query: 269 F-GSAAGTNITRTF--VHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGG--KGTD 323 F GS +I + + + +L F+ + L GGR A +VP+ VLF Sbjct: 290 FTGSVDTEDIAPSLKAICNSKQTELLFVALFLRMLKVGGRCACIVPNGVLFRTNSKAYRQ 349 Query: 324 IRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRT 382 +R++L+D L I+ +P+G+F GV T VL FTK + TD VW+Y++ Sbjct: 350 LRQELVDNQQLRAIIYMPSGVFKPYSGVSTAVLVFTK-------TNAGGTDKVWLYNMEG 402 Query: 383 NMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHL 442 + + + D H + H S +++ + ++ + D Sbjct: 403 DGYTLDDKRDIDDAH-NDVPDILERWAHLESEEKRDRK----QKSFLVSKQDIIDNDYDF 457 Query: 443 ATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAA 487 + +++ + E I ++ + ++ L + + A L E + Sbjct: 458 SFNKYVETEYERIEYPPTEQI-VAELDELNKEMATGLAELKKVLG 501 >UniRef50_A6TVC2 N-6 DNA methylase n=4 Tax=Bacteria RepID=A6TVC2_ALKMQ Length = 897 Score = 290 bits (741), Expect = 1e-76, Method: Composition-based stats. Identities = 96/475 (20%), Positives = 184/475 (38%), Gaps = 57/475 (12%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLP----EGYRW 56 + ++L + LW+ C+ LR GGV Y + + LLF K + + + EG + Sbjct: 3 VKKSELYSLLWEACNKLR-GGVEPSRYKDYVLVLLFFKYVSDRYKGQRFAEFTVNEGASF 61 Query: 57 DDLKSRIGQ-EQLQFYRKMLVHLGEDDK--KLVQAVFHNVSTTITEPKQITALVSNMDSL 113 +DL + G+ + + K++ E+++ + V N + K++ VS + ++ Sbjct: 62 EDLIAAKGKSDVGERVDKIIQKFLEENRLQGSLPDVSFNNPDELGSGKELVDKVSGLIAI 121 Query: 114 DW-----YNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL----- 163 + D GD YE + K A E+ GQ++TP + + I L+ Sbjct: 122 FQNPAIDFKSNRASGDDIIGDAYEYFMMKFAQESGKSKGQFYTPSEVSRIIARLIGIGDI 181 Query: 164 --KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGT 221 + + + DPAAG+ LI A +D + G E P T Sbjct: 182 KQETGKKWTLHDPAAGSGSLLIRAADEA-----------PTDEDGNSIVSIYGQEKYPDT 230 Query: 222 RRLALMNCLLHD-IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTN---- 276 LA MN +LH+ G + + D L K + NPPF T+ Sbjct: 231 AGLAKMNFILHNKGTGEIKSANTLANP-AYKDDFGGLRKFDFIVMNPPFSDKDWTDGIKP 289 Query: 277 -------ITRTFVHPTSNKQLCFMQHIIETL-HPGGRAAVVVPDNVLFEGGKGTDIRRDL 328 + P N + H+++ L G+A +++P VL IR+ + Sbjct: 290 SEDKFKRFDGYGIPPEKNGDYAWFLHVLKALDSQRGKAGIILPHGVLSRPNAEETIRKAV 349 Query: 329 MDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFG 388 +DK ++ I+ LP +FY G+ ++ K +D + + +++ + G Sbjct: 350 LDKRYIKGIVGLPANLFYGTGIPACIIIIDK-------EDADKREGIFMINASRGFKKDG 402 Query: 389 KRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLA 443 + ++ ++ + + EG F + + +E N N +++ Sbjct: 403 NKNRLREQDIEKIVQTFINKEE-----IEGYSKFVTYKEILEQNEGNLNVPRYIQ 452 >UniRef50_C7P6B0 N-6 DNA methylase n=1 Tax=Methanocaldococcus fervens AG86 RepID=C7P6B0_METFA Length = 502 Score = 289 bits (739), Expect = 2e-76, Method: Composition-based stats. Identities = 127/503 (25%), Positives = 218/503 (43%), Gaps = 89/503 (17%) Query: 1 MNNND--LVAKLWKLCDNLR--DGGVSYQNYVNELASLLFLKMCKETGQE---------A 47 M+ + + +++ CD LR DG +Y+ +L+ LLFLK+ + +E Sbjct: 1 MSKREALIRSEIKTACDILRTDDGTSGATDYIEQLSWLLFLKVFEGVEEELEEIAILNGE 60 Query: 48 EYLP---EGYRWDDL--------------------------KSRIGQEQLQFYRKMLVHL 78 EY+P + YRW + + + F +L Sbjct: 61 EYIPVIDKKYRWSNWAKRDWIGKPKECLKEFVDDVDEEFKKIDKPENAIIHFINNILFPY 120 Query: 79 GED-----DKKLVQAVFHNVS-TTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYE 132 + +++ V +F +S + P + ++ +D +D N + +YE Sbjct: 121 LRNLSGTPEREKVAQIFMEISGNKMKSPYNLMDVIEKIDKIDPRN---YEDTQVLSQIYE 177 Query: 133 GLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQ 192 +L +E G+++TPRP+I+ I+ ++KP+ E + DP G+AGFL+EA +Y+K + Sbjct: 178 EILLNMGSEAGWS-GEFYTPRPVIRFIVKIIKPKVGEKIFDPFGGSAGFLVEAYKYIKDK 236 Query: 193 TNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGS 252 D + ++ F G E P L MN +LH I + N+L Sbjct: 237 LGD--KITVQEEEILQRETFYGHEKKPLPYLLGTMNMILHGILTPNYYR-----RNSLME 289 Query: 253 DGENLP---KAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVV 309 D N+P K ++ TNPPFG + F +P + +Q+I+ L GGRAAV+ Sbjct: 290 DVHNVPEHEKYDVIMTNPPFGGKENKIVQNNFPYPVQATEALALQYIMRKLKDGGRAAVI 349 Query: 310 VPDN-VLFEGGKGTDIRRDLMDKCHLHTILRLPTGIF--YAQGVKTNVLFFTKGTVANPN 366 +P+ ++F GGK +IRR+L++K ++ I+ LP G+F GVKTN++FF K Sbjct: 350 LPEGQIMFGGGKFKEIRRELLEKFNVFAIVSLPQGVFSQMGAGVKTNIVFFEKSG----- 404 Query: 367 QDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEE 426 T ++W Y+L F K+ D+ + + + E +E Sbjct: 405 ---EPTKEIWYYELE---GKFTKKNKIKDKDFEDALKKF-------------EKREISEN 445 Query: 427 TEVADSEENKNTDQHLATSRWRK 449 + + EE K D L K Sbjct: 446 SWIVSIEEIKKRDYDLTPKNPNK 468 >UniRef50_C9KRW2 Type I restriction-modification system, M subunit n=5 Tax=Bacteroides RepID=C9KRW2_9BACE Length = 507 Score = 288 bits (737), Expect = 3e-76, Method: Composition-based stats. Identities = 87/502 (17%), Positives = 192/502 (38%), Gaps = 74/502 (14%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEY----------- 49 + ++L + LW +LR G + Y + LLF K + E Sbjct: 15 ITLDELKSFLWAAATHLR-GQIDAAGYKEYIFPLLFFKRISDVYDEQFEGFVCEGGVEYA 73 Query: 50 ----------LPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKL---------VQAVF 90 +P+G W D++ + + + + + + + ++ +F Sbjct: 74 GMQVEDLPIRIPDGAHWRDVRE-VTENVGNKLVEAFIAIEQANPAKEMDGRKIGGLEGIF 132 Query: 91 HNVSTTITEPKQITALVSNM--DSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQ 148 + K +++++ D + D+ G YE L+ K A++ + A + Sbjct: 133 GPKDGWTNKAKMPDNIITSLIEDFSKYTLSLKVCPADEMGQAYEYLVGKFADDAGNTAQE 192 Query: 149 YFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQI 208 ++T R +++ + +L+PQP E + DP G+ G L++ Y++++ + + Sbjct: 193 FYTNRTVVQLMAEILQPQPNESIYDPTCGSGGMLVKCLDYLRNKGAEWQSVQ-------- 244 Query: 209 HRAFIGLELVPGTRRLALMNCLLHDIE-GNLDHGGAIRLGNTLGSDGENLPKAHIVATNP 267 G E+ T +A MN L+ IE ++ + L DG +L K IV NP Sbjct: 245 ---VFGQEVNGLTSSIARMNLYLNGIEDFSIACADTLENPAFL--DGSHLRKFDIVLANP 299 Query: 268 PFGSAAG-------TNITRTFV--HPTSNKQLCFMQHIIETL-HPGGRAAVVVPDNVLFE 317 P+ R F+ P F+QHI+ ++ GR A+++P VL Sbjct: 300 PYSIKEWNREKFMNDKWGRNFLGTPPQGRADYAFIQHILASMDEKTGRCAILLPHGVLNR 359 Query: 318 GGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWV 377 + +RR L+++ + +++ + +F+ ++ ++ + + + V Sbjct: 360 M-EEEIMRRKLIEEDLVDSVISIGKNLFFNSPMEACIML------CSSKKPSDRIKQVLF 412 Query: 378 YDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPH--------GLSPRTEGEWSFNAEETEV 429 + + T+EH++ +Y + + ++ E+S + + Sbjct: 413 IRATDLVERKNGESYLTEEHVEEIVSLYRGNTNVDNRSCIVDTKTISQNEYSISPKLYVK 472 Query: 430 ADSEENKNTDQHLATSRWRKFS 451 EN +W+++S Sbjct: 473 QTQTENI-LKFSEQIEQWQEYS 493 >UniRef50_B4S4B5 N-6 DNA methylase n=3 Tax=Bacteria RepID=B4S4B5_PROA2 Length = 547 Score = 287 bits (733), Expect = 9e-76, Method: Composition-based stats. Identities = 93/567 (16%), Positives = 192/567 (33%), Gaps = 105/567 (18%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA-------------- 47 N L + +W+ ++R G Y + + L+F K + + Sbjct: 7 NRKSLESWIWEAACSIR-GAKDAPKYKDYILPLIFTKRLCDVFDDELNRIAAEVGSRKKA 65 Query: 48 ------------------EYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAV 89 PE W ++ ++ + + + ++ L+Q + Sbjct: 66 FQLARADHKLVRFYLPLIPDDPEQPVWSVIR-KLSDRIGEGVTTYMRAIARENP-LLQGI 123 Query: 90 FHNVSTTIT-------EPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANET 142 V T + +++ L+ + + G D G YE L++K A Sbjct: 124 IDRVDFNATTHGQRDLDDDRLSNLIEAISTKRL--GLDDVEADIIGKSYEYLIRKFAEGG 181 Query: 143 KSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGD 202 AG+++TP + + L+P+ + DP G+ G L++ + ++ Q ++ + Sbjct: 182 GQSAGEFYTPPEVGTIMSRALQPEQGMEIYDPTCGSGGLLVKCEIAMEEQRREIKEGGHS 241 Query: 203 TQDFQIHRA-------------------FIGLELVPGTRRLALMNCLLHDIEGNLDHGGA 243 G E +P T +A MN ++HD+EG ++ G Sbjct: 242 CPPLHSELNGYPLCNGGLENPPSFAPLKLFGQEYIPETWAMANMNMIIHDMEGQIEIGDT 301 Query: 244 IRLGNTLGSDGENLPKAHIVATNPPFGSAA------GTNITRTFV-----HPTSNKQLCF 292 + G+ L V NP + + F S+ + Sbjct: 302 FKNPKFRNKQGK-LRTFDRVVANPMWNQDWFTEADYDNDELDRFPAGAGFPGKSSADWGW 360 Query: 293 MQHIIETLHPGGRAAVVVPDNVLFEG------GKGTDIRRDLMDKCHLHTILRLPTGIFY 346 +QH+ +L+ GRAA+V+ + G K ++R+ +D + ++L LP +FY Sbjct: 361 VQHMHASLNDTGRAAIVLDTGAVSRGSGNAGTNKEKNVRKWFVDNDIIESVLYLPENLFY 420 Query: 347 AQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYG 406 VLF K + V++ + + DE ++ Sbjct: 421 NTTAPGIVLFLNKAKPEDRKS------KVFLVNASRIFEKGDPKNFIPDEGIKRIVD--- 471 Query: 407 EDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDIS 466 T W + + + D E K D +++ SR+ + L Sbjct: 472 ---------TLIGWKEEEKLSRIVDHAELKKNDYNISPSRYIHTGEAE-----TYRLIPE 517 Query: 467 WLKDKDSIDADSLPEPDVLAAEAMGEL 493 +K+ ++I+ ++ D + +L Sbjct: 518 IVKELNAIEEEARET-DKALRNILKQL 543 >UniRef50_Q12V00 N-6 DNA methylase n=24 Tax=cellular organisms RepID=Q12V00_METBU Length = 554 Score = 285 bits (730), Expect = 2e-75, Method: Composition-based stats. Identities = 97/450 (21%), Positives = 169/450 (37%), Gaps = 70/450 (15%) Query: 66 EQLQFYRKMLVH--LGEDDKKLVQAVFHNVS--------TTITEPKQITALVSNMDSLDW 115 E LQ + +G + + + +F ++ T I+ ++S++D +D+ Sbjct: 147 EDLQGILNNIQSSTMGTESEDDFENLFEDMDLNSSKLGKTPAARNALISKVLSHLDKIDF 206 Query: 116 YNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPRE--VVQD 173 D GD YE L+ + A+ AG+++TP+ + + L+ + V D Sbjct: 207 --QLEHTELDVLGDAYEYLIGQFASGAGKKAGEFYTPQQVSTILAKLVTTGKKRLRSVYD 264 Query: 174 PAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD 233 P G+ L+ R V+ + AF G EL T LA MN +LH+ Sbjct: 265 PTCGSGSLLLRVAREVEDVS-----------------AFYGQELNRTTYNLARMNMILHN 307 Query: 234 IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNI----TRTF-----VHP 284 + I+ +TL + + NPPF + N F + P Sbjct: 308 VHYRKF---DIKQEDTLEYPQHLGMQFEAIVANPPFSAQWSANPLFSSDERFSQYGKLAP 364 Query: 285 TSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLM-DKCHLHTILRLPTG 343 S F+QH+I L G A+V+P VLF G IR+ L+ +K +L ++ LP Sbjct: 365 KSKADYAFVQHMIHHLAENGSMAIVLPHGVLFRGAAEGHIRQFLIEEKNYLDAVIGLPAN 424 Query: 344 IFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFER 403 +FY + T VL F K + DD+ D + + + Sbjct: 425 VFYGTSIPTCVLVFKKC--------RENPDDILFIDASQDYEKVKTQNQLRPCDIDKIVD 476 Query: 404 VYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSL 463 Y + + ++S A E+ +++ N N +++ T F E + Sbjct: 477 TY------RNRKEIEKYSHVASLDEIKENDYNLNIPRYVDT-----FEEEE-------PI 518 Query: 464 DISWLKDKDSIDADSLPEPDVLAAEAMGEL 493 DI + + + + D A EL Sbjct: 519 DIDAVAASLLELDEKMSKIDENIAGFCEEL 548 Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 6/77 (7%) Query: 3 NNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK---ETGQEAEYLPEGYRWDDL 59 L +LW + + LR G ++ + + + +F K E + P+G + D+ Sbjct: 6 KKQLEQQLWNIANELR-GKMNADEFRDYILGFIFYKYLSNKIEIYADEILKPDGIAFKDI 64 Query: 60 KS--RIGQEQLQFYRKM 74 K +G+E ++ + Sbjct: 65 KEDTELGKEFIEAISEA 81 >UniRef50_Q47GH6 N-6 DNA methylase n=13 Tax=cellular organisms RepID=Q47GH6_DECAR Length = 529 Score = 285 bits (730), Expect = 3e-75, Method: Composition-based stats. Identities = 105/542 (19%), Positives = 182/542 (33%), Gaps = 78/542 (14%) Query: 1 MNNNDLVAKLWKLCDNLR-DGGVSYQNYVNELASLLFLKMCKETGQEAE----------- 48 +N DL ++LW D L + G+ + N + L+FL+ ++ EAE Sbjct: 17 INLQDLESRLWSAADQLWANTGLKPSEFSNPVLGLIFLRYAEKRFHEAEAKLVAGGLEVS 76 Query: 49 -------------YLPEGYRWDDLKSRI-GQEQLQFYRKMLVHLGEDDKKLVQAVFHNVS 94 YLPE R+ L G + + + + + E D ++ V Sbjct: 77 DIEKFDYQAEGALYLPETARFTYLLDLAEGHDIGKAINEAMAAV-EADNDELKGVLPRSY 135 Query: 95 TTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRP 154 + + L NG D FG +YE L K A G ++TP Sbjct: 136 GKVENRVLVE-------LLRLLNGLGEIEGDAFGKIYEYFLGKFALAEGQKGGVFYTPTS 188 Query: 155 LIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIG 214 ++K I+ +++P + + DPA G+ G +++ +V + G Sbjct: 189 IVKLIVEIIEPFHGQ-IFDPACGSGGMFVQSAMFVGRH----------KKRAAEELTVFG 237 Query: 215 LELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGEN-LPKAHIVATNPPFGSA- 272 E T +LA MN +H + G+ +R NT D + + V NPPF + Sbjct: 238 TEKSNDTVKLAKMNLAVHGLSGD------VRESNTYYEDPHKAVGRFDFVMANPPFNVSG 291 Query: 273 ------AGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRR 326 V T N ++Q L+ GRA V+ ++ G +IR+ Sbjct: 292 VDKERIKDDPRFPFGVPTTDNANYLWIQLFYSALNNTGRAGFVMANSAGDARGAELEIRK 351 Query: 327 DLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPS 386 L+ L I+ + FY + + FF K +DK V D R Sbjct: 352 KLILSGGLEAIVSVGPNFFYTVTLPCTLWFFDKTKAKRERKDK-----VLFIDARGYYRQ 406 Query: 387 FGKR-TPFTDEH---LQPFERVY---------GEDPHGLSPRTEGEWSFNAEETEVADSE 433 + F E L R++ G EG + +VA Sbjct: 407 VSRAIRDFLPEQVEFLSNIVRLWRGEAVETEAGSGEMMTEQFPEGAYRDIVGVCKVATLA 466 Query: 434 ENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGEL 493 + + L R+ + I+ L ++ + + + + L Sbjct: 467 DIEAQGWSLNPGRYVGVVHHSAEDFDFEE-RIASLTEEFATLNNEASDLSQKIEMDLQNL 525 Query: 494 VQ 495 + Sbjct: 526 LS 527 >UniRef50_Q3ZWI3 Putative type I restriction-modification system methylation subunit n=1 Tax=Dehalococcoides sp. CBDB1 RepID=Q3ZWI3_DEHSC Length = 645 Score = 285 bits (729), Expect = 3e-75, Method: Composition-based stats. Identities = 95/561 (16%), Positives = 197/561 (35%), Gaps = 77/561 (13%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA------------- 47 + +L A L K + LR G V + + + +LLF K + E Sbjct: 13 LTQAELDAFLEKAANILR-GNVDHSEFRGYVFALLFFKRISDVYIEEVRKLTAQLGDETL 71 Query: 48 --------EYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVF-HNVSTTIT 98 +P+G WD + + + ++ + ++ + V Sbjct: 72 AKDPKMHNFVVPDGSLWDIAARQSRNQVGTTLNEAMIAIERANQPKFDGILTSGVDFNDA 131 Query: 99 EPKQITALVSNMDSLDWYNGAHG-KSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIK 157 E L++ ++ + D G+ YE L++ A+ +G+++TP+ + Sbjct: 132 EKLPRDKLINLINHFSSQIFDRAHVTDDVLGNAYEYLIRNFASRAGKSSGEFYTPKEVAY 191 Query: 158 TIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLEL 217 + +++PQP + + D A+G+ G L++ YV Q D D L E Sbjct: 192 LMSEIVEPQPGQSICDWASGSGGLLLQCRNYVTRQCKDPDRL-----------LLYAQES 240 Query: 218 VPGTRRLALMNCLLHDIEG-NLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGT- 275 T ++ +N +LH ++ H ++R + DG+ L K + NPPF Sbjct: 241 NLSTYNISRINMILHGVKSWEHRHQDSLRNPLHV-DDGKKLLKFDRIVMNPPFSLEDWGY 299 Query: 276 ---------NITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEG-------- 318 + P +N +++H++++L G+A VV+ VLF G Sbjct: 300 DDFQGGDPFGRFGYGMPPRNNGDYAWLEHVLKSLKDTGKAIVVMSQGVLFRGQPEQTEED 359 Query: 319 -------GKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNC 371 IR + + ++ LP+ +FY V ++ K Sbjct: 360 DGRNQSADAEYVIREGFIKADAIECVIVLPSKLFYGNTVPGCLIIMNKNKPPERK----- 414 Query: 372 TDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVAD 431 + + + N + + L + R + E ++ Sbjct: 415 -NKILMIWASRNFQNANPQNILRPSDLMRILVPWRAFGDLDLARRL----VSIHEEKLVQ 469 Query: 432 SEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMG 491 EE + + E + T +L++S L+ + + + + + Sbjct: 470 EEELERQRRLKDIEDAYAPILEPLET---LTLELSRLETSNWQSNGYSRKSEQVIR--IR 524 Query: 492 ELVQALSELDALMRELGASDE 512 EL +++ EL + E A+++ Sbjct: 525 ELKRSVKELGKIQGERNAAED 545 >UniRef50_UPI0001B4C614 type I restriction-modification system, M subunit n=1 Tax=Streptomyces griseoflavus Tu4000 RepID=UPI0001B4C614 Length = 503 Score = 285 bits (728), Expect = 4e-75, Method: Composition-based stats. Identities = 120/470 (25%), Positives = 204/470 (43%), Gaps = 59/470 (12%) Query: 2 NNNDLVAKLWKLCDNLRDG-GVSYQ-NYVNELASLLFLKMCKET-GQEAEY--------- 49 + + L + + D +R G++ + + +L+ LLFLK QE E Sbjct: 16 SQSRLASLIKSARDTMRKDAGMNGDLDRLPQLSWLLFLKAFDGRVEQEGEALDPDGYRRA 75 Query: 50 LPEGYRWDDLKS---RIGQEQLQFYRKMLV--------HLGEDDKKLVQAVFHNVSTTIT 98 + E YRW+D + G E F L+ ED + ++ +F +V + Sbjct: 76 IEEPYRWEDWATVPDFSGDELKSFVNDKLIPHLAGLVGDDAEDPRNVISTIFKDVVNRMQ 135 Query: 99 EPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKT 158 + LV ++ + + +YE +L++ + G+++TPRP+ + Sbjct: 136 SGTLLRDLVDIVNQIHF---VSADDIHTMAFVYESILKEMRDVAGGS-GEFYTPRPVNRF 191 Query: 159 IIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELV 218 ++ + E + DPA+GT GFL++A +K Q DTQ ++H+ G+E Sbjct: 192 MVQQSFLELGESILDPASGTGGFLVQAYEALKGQVKT------DTQRRRLHKDIRGIEKK 245 Query: 219 PGTRRLALMNCLLHDIEG-NLDHGGA-IRLGNTLGSDGENLPKAHIVATNPPFGSAAGTN 276 P L MN LLH I+ ++ G A + + N+ +D K +V TNPPFG Sbjct: 246 PLPYLLGSMNLLLHGIDAPHIRRGSALLEMRNSNAAD-----KVDVVLTNPPFGGEEEAT 300 Query: 277 ITRTFV--HPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLF---EGGKGTDIRRDLMDK 331 + + F T F+ I++ L GGR A+V+P+ LF E G I++ LM Sbjct: 301 VVKAFPDGFRTQETAWLFLYSILDQLKLGGRCAIVLPNGSLFAVGENSIGAKIKKKLMKD 360 Query: 332 CHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYD--LRTNMPSFG 388 C+LHT++RLP G+F + +N+LFF K T +VW Y+ L + Sbjct: 361 CNLHTVVRLPQGVFAPYTQIPSNILFFEKT---------GPTQEVWFYEVPLPEGRRGYT 411 Query: 389 KRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNT 438 K P E + +G R GE ++ +++ S N + Sbjct: 412 KTKPMRFEDFESCVDWWGGKQR--EGREVGEQAWVVPASDIIASGFNLDI 459 >UniRef50_Q57168 Putative type I restriction enzyme HindVIIP M protein n=176 Tax=cellular organisms RepID=T1MH_HAEIN Length = 443 Score = 284 bits (726), Expect = 6e-75, Method: Composition-based stats. Identities = 84/425 (19%), Positives = 153/425 (36%), Gaps = 57/425 (13%) Query: 50 LPEGYRWDDLKS----RIGQEQ--------LQFYRKMLVHLGEDDKKLVQAVFHNVSTTI 97 +P RW L+ G E + E D + ++ V +S Sbjct: 1 MPASARWQALQEVSILNTGAELPWGGKFSGVAKLIDDAFDAIEKDNEKLKGVLQRISGYA 60 Query: 98 TEPKQITALVSNMDSLDW----YNG--AHGKSRDDFGDMYEGLLQKNANETKSGAGQYFT 151 + L+ + YNG H ++D G +YE L + A +GQYFT Sbjct: 61 VNEDTLRGLIILFSDTHFTRPTYNGEPVHLGAKDILGHVYEYFLSRFAQAEGKRSGQYFT 120 Query: 152 PRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRA 211 P+ ++ I+ +L+P V DPA G+ GF ++ +R++ + +++++ + Sbjct: 121 PKSIVSLIVEMLEPYSG-RVYDPAMGSGGFFVQTERFITAHQGNINNV-----------S 168 Query: 212 FIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGS 271 G E P T +LA MN + I+ + A ++ K + NP F Sbjct: 169 IYGQEFNPTTWKLAAMNMAIRGIDYDFGKYNA----DSFTQPQHIDKKMDFIMANPHFND 224 Query: 272 AAGTN-------ITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFE-GGKGTD 323 N P N ++QH+I L P G+ A+++ + + + Sbjct: 225 KEWWNESLADDPRWAYGTPPKGNANFAWLQHMIYHLSPNGKIALLLANGSMSSQTNNEGE 284 Query: 324 IRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTN 383 IR+ +++ + ++ LP +F + + F + K +V D R Sbjct: 285 IRKAIINADLVECMVALPGQLFTNTKIPACIWFLNRN--------KKRKGEVLFIDARQI 336 Query: 384 MPSFGK-RTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHL 442 + FT + + T + A + A EE KN D L Sbjct: 337 GYMKDRVLRDFTADDIAKIADTLHAWQ------TSDGYEDQAAFCKSATLEEIKNNDFVL 390 Query: 443 ATSRW 447 R+ Sbjct: 391 TPGRY 395 >UniRef50_UPI000038E019 type I restriction-modification system methylation subunit n=2 Tax=Ferroplasma acidarmanus fer1 RepID=UPI000038E019 Length = 507 Score = 283 bits (724), Expect = 1e-74, Method: Composition-based stats. Identities = 117/549 (21%), Positives = 204/549 (37%), Gaps = 103/549 (18%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA------------- 47 + NDLV + D +R + +Y + LLF+K + +E Sbjct: 9 ITKNDLVKLVDNAADLIR----TSVDYK-YILVLLFIKRLSDRWKEEIEDAMSEIMEETG 63 Query: 48 -----------------EYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAV- 89 +PE W++++ + + + + + + + +K+L V Sbjct: 64 IDESEAAKRAVSNEFHSFMVPENVLWNNIR-KDRDKLTENMSRAINEIAKQNKELDGVVN 122 Query: 90 ---FHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGA 146 F + + T + L + D ++ N D GD YE +L + A E Sbjct: 123 RIDFIDFTKTRENRILLEQLFALFDKYNFSN--KCIEGDAMGDAYEHILMRFAPEKAKE- 179 Query: 147 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDF 206 G+ +TPR +++ ++ +L PQP V DPA G+ G LIEA +VKS+ D Sbjct: 180 GEVYTPREVVRLMVDILDPQPGMSVYDPACGSGGMLIEAYEHVKSRMG---------VDK 230 Query: 207 QIHRAFIGLELVPGTRRLALMNCLLHDI-EGNLDHGGAIRLGNTLGSDGENLPKAHIVAT 265 G E P T LA MN +LHDI E +L+ G ++ + G L V Sbjct: 231 ANRVGLYGEERSPTTYALAKMNTILHDISESHLEVGDSLLYPKFKTASG--LRHFDFVLA 288 Query: 266 NPPFGSAAG----------TNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVL 315 NPP+ + P +++H++ T + AV++ L Sbjct: 289 NPPWSQKGYGEDTLKQAEFKDRYAYGFVPQRYGDWAWIEHMLYT--SKSKVAVIMDQGAL 346 Query: 316 FEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDV 375 F IR+ ++D+ L ++ LP IFY G +L F K + + D V Sbjct: 347 FRSNSEKIIRQKIVDEKLLDSVTLLPEKIFYNTGAAGAILIFNK------EKQEEYRDKV 400 Query: 376 WVYDLRTN---MPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADS 432 D P K T++++ Y ++ ++V Sbjct: 401 LFIDASREYGKHPDMRKLNIITNDNIDRIVSAYK------------KFESIDGFSKVVSV 448 Query: 433 EENKNTDQHLATSRWRKFSREWIRTAKSDSLDIS-WLKDKDSIDADSLPEPDVLAAEAMG 491 +E K D +L + + I S+DI+ +++ + I+ D E Sbjct: 449 DEIKEKDYNLNVTTF------VIPINNESSIDITGTIEELNGINTD--------LTEVEE 494 Query: 492 ELVQALSEL 500 +L L EL Sbjct: 495 KLNGYLKEL 503 >UniRef50_D2MJZ6 Type I restriction-modification system, M subunit n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MJZ6_9BACT Length = 545 Score = 283 bits (724), Expect = 1e-74, Method: Composition-based stats. Identities = 93/545 (17%), Positives = 187/545 (34%), Gaps = 90/545 (16%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETG-------------QEAE 48 N+ L + +W ++R G Y + + L+F K + +E Sbjct: 21 NDKSLESWIWDAACSIR-GAKDAPKYKDYILPLIFAKRLCDVFDDELNRIATEVGSREKA 79 Query: 49 YLPEGYRWDDLKSRIG---------------QEQLQFYRKMLVHLGE----------DDK 83 + W + + Q RK+ +GE + Sbjct: 80 FQLVVADWRRVADKKKAMVRFYLPLMPKDTEQPVWSVIRKLSDKIGEGVTTHMREIAREN 139 Query: 84 KLVQAVFHNVSTTIT-------EPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQ 136 L++ + V T + +++ L+ + + G D G YE L++ Sbjct: 140 PLLKGIIDRVDFNATTHGQRDLDDDRLSNLIEAISTKRL--GLADVEADIIGKSYEYLIR 197 Query: 137 KNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDL 196 K A + AG+++TP + + + +L P P + DP G+ G LI+ + ++++ Sbjct: 198 KFAEGSGQSAGEFYTPGEVGEIMARVLAPDPGMEIYDPTCGSGGLLIKCELAMEAKVKAA 257 Query: 197 DDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGEN 256 + G E VP T +A MN ++HD+EG ++ G + Sbjct: 258 KKTKDAPLPLK----LFGQEYVPETWAMANMNMIIHDMEGQIEIGDTFKNPRFRAEKSGK 313 Query: 257 LPKAHIVATNPPFGSAA------GTNITRTFV-----HPTSNKQLCFMQHIIETLHPGGR 305 L V NP + + + F S+ ++QH+ +L+ GR Sbjct: 314 LRTFDRVVANPMWNQDSYIEADYDNDELDRFPAGAGFPGKSSADWGWVQHMHASLNDKGR 373 Query: 306 AAVVVPDNVLFEG------GKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTK 359 AAVV+ G K +R+ +D+ + ++L LP +FY VLF K Sbjct: 374 AAVVLDTGAASRGSGNAGTNKEKTVRQWFVDQDLIESVLYLPENLFYNTTAPGIVLFLNK 433 Query: 360 GTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGE 419 + +++ + + E + + + Sbjct: 434 AKP------RARQGKIFLVNASQVFEKGDPKNFIPPEGIARIAGI------------LIK 475 Query: 420 WSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSL--DISWLKDKDSIDAD 477 W + + + E K D +++ SR+ + E + D+ ++++ Sbjct: 476 WKEEEKLSRIVAHAELKKNDYNISPSRY-IHTGEAEAYRPLAEIVADLDAIEEEAKETDR 534 Query: 478 SLPEP 482 +L E Sbjct: 535 ALREI 539 >UniRef50_B0BR03 Type I restriction-modification system M subunit n=50 Tax=Bacteria RepID=B0BR03_ACTPJ Length = 489 Score = 283 bits (723), Expect = 1e-74, Method: Composition-based stats. Identities = 125/540 (23%), Positives = 227/540 (42%), Gaps = 92/540 (17%) Query: 1 MNNNDLVAKLWKLCDNLRDG-GVS-YQNYVNELASLLFLKMCKETGQEAEYLPEGY---- 54 M+ N+LV +L D +R+ G++ + ++ +LFLK+ QE E + + Y Sbjct: 1 MSLNNLVKRLQ---DVMRNDAGINGDAQRIEQIVWILFLKIYDAKEQEWEQIDDNYHSIL 57 Query: 55 ----RWDDL-------KSRIGQEQLQFYRKMLVHLGED---------DKKLVQAVFHNVS 94 RW + K+ G E L F L ++ ++K+++A F + + Sbjct: 58 PDFLRWQNWAKDNKDGKAMTGDELLNFVNNELFPALKNLPISAETPMNQKIIRAAFEDNN 117 Query: 95 TTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRP 154 + + +++ +D + N + R FGD+YE +L+ + ++ AG+++TPR Sbjct: 118 NYMKNGILLRQVINIIDEI---NFEQYQERHAFGDIYENILK--SLQSAGNAGEFYTPRA 172 Query: 155 LIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIG 214 + + ++KP+ E + D A GT GFL A + + Q + ++D + + + G Sbjct: 173 VTDFMAKMIKPRLGEKIADFACGTGGFLTSALKELDKQNDSINDKN------LLSNSVYG 226 Query: 215 LELVPGTRRLALMNCLLHDIE-GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAA 273 +E L + N LLHDI+ N+ H A+ D K ++ NPP+G + Sbjct: 227 IEKKALPHLLCITNLLLHDIDNPNVHHDNALEKP---VKDYTENDKFDVILMNPPYGGSE 283 Query: 274 GTNITRTFVH--PTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGT-DIRRDLMD 330 I F +S FM I+ L GR A+V+PD LF I++ LM Sbjct: 284 IEQIKTNFPSALRSSETADLFMSVIMYRLKKNGRVAIVLPDGFLFGTDNAKMAIKQKLMS 343 Query: 331 KCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVY--DLRTNMPSF 387 + +LHT++RLP +F + TN+LFF T + W Y D+ +F Sbjct: 344 EMNLHTVIRLPHSVFAPYTSITTNILFFDNT---------EPTKETWFYRLDMPQGYKNF 394 Query: 388 GKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRW 447 K P EH EW +N + E+ ++ Sbjct: 395 SKTKPMKLEHFNEVM----------------EWWYNRQAIEIDGFDKA------------ 426 Query: 448 RKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALMREL 507 R +S + I + ++D+ + + + PD L A + +++D ++ E+ Sbjct: 427 RCYSYQEI-ADRQFNIDLCGF----PHEEEEILPPDELIANYQQKRTALNADIDRILGEI 481 >UniRef50_C7NM08 Type I restriction-modification system methyltransferase subunit n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NM08_KYTSD Length = 644 Score = 283 bits (723), Expect = 1e-74, Method: Composition-based stats. Identities = 98/475 (20%), Positives = 167/475 (35%), Gaps = 90/475 (18%) Query: 4 NDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKE--TGQEAEYLPEGYRWDDLKS 61 D VA +W++ D LR G Y + + LL L+ +AE + + WD + Sbjct: 7 EDKVAFVWRIADRLR-GTFKQHEYGSVMLPLLVLRRMDAALADTKAEVVAQAKGWDTIGP 65 Query: 62 --------------------------RIGQEQLQFYRKMLVHLGEDDKKLVQA-VFHNVS 94 + K + HL + ++++A F Sbjct: 66 GQDKLLKRTSRRPFYNTSPLTFAGLLNDADNLRENLAKYIRHLSPEAARVIEAYDFDPKI 125 Query: 95 TTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRP 154 + + ++++ LD S + G ++E LL+K + + AG+++TPR Sbjct: 126 ERMDRDDILYGVIADFADLDLRTSV--VSNEAMGYIFEELLRKFSEMSNETAGEHYTPRE 183 Query: 155 LIKTIIHLL-----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDT 203 +I ++ LL P+P V DPAAGT G L+ A V+ + Sbjct: 184 VISLMVQLLLTGKTHTELMENPRPVRTVYDPAAGTGGMLVGALDGVQGLNGNAT------ 237 Query: 204 QDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIV 263 G EL T +A + ++ I GN+L D + + Sbjct: 238 ------VTVSGQELNDETWAIAQSDLMMLGIGPERMAR-----GNSLTQDAFPTEQFDFM 286 Query: 264 ATNPPFGSAAGT---------------NITRTFVHPTSNKQLCFMQHIIETLHPGG-RAA 307 NPP+G S+ F+QH+I + PGG R Sbjct: 287 LANPPYGVDWKKYAGPIKDEAENLGFSGRFGAGTPRVSDGSFLFLQHMISKMKPGGSRIG 346 Query: 308 VVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVAN 364 +V+ + LF G ++IR +++ L I+ LP +FY G+ T V T Sbjct: 347 IVLSGSPLFSGQAGSGESEIRGWILENDWLEGIVALPDQMFYNTGISTYVWILTN----- 401 Query: 365 PNQDKNCTDDVWVYDLRTNMPS-----FGKRTPFTDEHLQPFERVYGEDPHGLSP 414 ++D V + D R KR E ++ +YG + Sbjct: 402 -DKDGASRGKVRLIDAREMGTKMRKSLGDKRKELKPEAIREITNLYGGALDEFAD 455 >UniRef50_Q1Q861 N-6 DNA methylase n=1 Tax=Psychrobacter cryohalolentis K5 RepID=Q1Q861_PSYCK Length = 526 Score = 282 bits (722), Expect = 2e-74, Method: Composition-based stats. Identities = 104/555 (18%), Positives = 191/555 (34%), Gaps = 97/555 (17%) Query: 1 MNNNDLVAKLWKLCDNLR-DGGVSYQNYVNELASLLFLKMCKETGQEAE----------- 48 ++ L + LW DNLR + ++ Y + L L+FL+ + ++A+ Sbjct: 3 ISIKQLESDLWNAADNLRANSTLTAAEYKDPLLGLVFLRFVQNRHEDAKVKIQESLAINP 62 Query: 49 -------------------YLPEGYRWDDLKSRIGQEQL-QFYRKMLVHLGEDDKKLVQA 88 LPE ++D L + E + + + + E+ LV Sbjct: 63 RTGQKREVTKDDFVAAGSILLPEKAKYDYLAALPESENIAEAINNAMKLIEEEYPSLVGI 122 Query: 89 VFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNA--NETKSGA 146 + N + + K + LV + + D FG +YE L K + Sbjct: 123 LPKNYQ--VFDNKLLRDLVRVFNK----DAVRKAKGDIFGRIYEFFLMKFSMQGAGAQEG 176 Query: 147 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDF 206 G++FTP L+ I++ ++P ++ DPA G+ G ++ +++ + + Sbjct: 177 GEFFTPPSLVNLIVNFIQPDHG-IIHDPACGSGGMFVQTAHFIQGHMPN--------KSV 227 Query: 207 QIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATN 266 G EL +LA MN +H IEG + + + + K V N Sbjct: 228 NEAITVYGTELKSNNTKLAKMNLAVHGIEGAIIESNS-----FYTNPHDLNGKCDFVMAN 282 Query: 267 PPFGSAAGTNITRTFVHPTS--------------NKQLCFMQHIIETLHPGGRAAVVVPD 312 PPF + + N ++Q+ L+ GRA V+ Sbjct: 283 PPFNVSGIDGKNKFLTEDARLPFGAPLTKGGTIGNGNYLWIQYFHSYLNKTGRAGFVMAS 342 Query: 313 NVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCT 372 + G IR+ L++ + I+ + FY + + +V FF K A Sbjct: 343 SATDAGHAEKLIRQQLIETGDVECIVSIANNFFYTRSLPCHVWFFNKEKKAENK------ 396 Query: 373 DDVWVYDLRTNMPSFGKR-TPFTDEHLQPFE---RVYGEDPHGLSPRTE--------GEW 420 D + + D R F+++ L+ + D G+S E G + Sbjct: 397 DKILMIDARNTYRKVSSTIQDFSEDQLEGLTALINAFRGDELGVSKDNEWFTEHFPDGTY 456 Query: 421 SFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLP 480 + +V D + K D L R+ ++DI D + Sbjct: 457 TDVEGLCKVVDLDALKEQDYSLTPGRYV-----------GVNIDIDMDFDYKGRMTEIRS 505 Query: 481 EPDVLAAEAMGELVQ 495 E L EA + + Sbjct: 506 ELSSLNKEAAELMKK 520 >UniRef50_A4CI92 Type I restriction-modification system DNA methylase n=3 Tax=Bacteroidetes RepID=A4CI92_9FLAO Length = 531 Score = 282 bits (721), Expect = 3e-74, Method: Composition-based stats. Identities = 94/509 (18%), Positives = 178/509 (34%), Gaps = 83/509 (16%) Query: 5 DLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQ------------------- 45 + +LW + LR G V+ Y + + L+FLK E + Sbjct: 9 NFEKELWNAANELR-GAVAENQYKDYVLPLIFLKHMSERYEMRRDELMDAFEDEASNYYG 67 Query: 46 -------------------EAEYLPEGYRWDDLKSRIGQEQL--------QFYRKMLVHL 78 +P+ W+ L+ ++ + + L Sbjct: 68 LSEDDRNYVLEDPDEYLSKNTYIIPKKATWEFLQDNAERDNIKVLVDEAFDTLDETLGAF 127 Query: 79 GEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKN 138 + K ++ +F T + + L+S+ + D G +YE + K Sbjct: 128 RPELKGILPRIFVKSQLTSRQVGGLINLLSH----PKLSVKENPESDILGRVYEYYIGKF 183 Query: 139 ANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDD 198 A SGAGQ+FTP +++ ++ +++P + D A G+ G +++ +++++ D + Sbjct: 184 AIAEGSGAGQFFTPGSIVRLMVEMIEPYKG-KIFDAACGSGGMFVQSLKFLEAHGGDKRN 242 Query: 199 LDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLP 258 + + G E GT RL MN L D+ + +RLG++L D Sbjct: 243 I-----------SIYGQERYSGTLRLCKMNLALRDLSFD------VRLGDSLLQDKFPDL 285 Query: 259 KAHIVATNPPFGSAAGTNITRTFVHPT-----------SNKQLCFMQHIIETLHPGGRAA 307 +A + NPPF + P N +MQ L G AA Sbjct: 286 EADYILVNPPFNVSQWHPEDLPDKDPRLFGPKEEFTTDGNANYMWMQTFWSHLSNTGTAA 345 Query: 308 VVVPDNVLFEGGK-GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPN 366 VV+ + + G K ++R+ ++D+ + I+RLP +F G+ + +K Sbjct: 346 VVMANGAMTTGNKGEKNVRQHMVDEGMIDAIVRLPDKLFLTTGIPACIFILSKNRDGKDG 405 Query: 367 QDKNCTDDVWVYDLRTNMPSFGKR-TPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAE 425 + +++ D+ +R F + L Y L + + Sbjct: 406 VHRERKEEILFIDMSKMGRMESRRLRVFDEADLIKAVEAYHAW-RNLPNKDNAPYENQDG 464 Query: 426 ETEVADSEENKNTDQHLATSRWRKFSREW 454 A EE + D L + E Sbjct: 465 FCYAATLEEVQKQDYKLTPGIYVGIEEEE 493 >UniRef50_C6BRN9 N-6 DNA methylase n=26 Tax=Bacteria RepID=C6BRN9_DESAD Length = 489 Score = 281 bits (718), Expect = 6e-74, Method: Composition-based stats. Identities = 119/493 (24%), Positives = 191/493 (38%), Gaps = 64/493 (12%) Query: 6 LVAKLWKLCDNLRD--GGVSYQNYVNELASLLFLKMCKE-----------TGQEAEYLPE 52 + D L G S +Y + + +LFLK + G + E++ + Sbjct: 2 FEQTFKNIDDVLWKEAGCSSELDYTEQTSWMLFLKYLDDLEAARAEDEELRGNDYEFIID 61 Query: 53 -GYRWDDLKS-------------RIGQEQLQFYRKMLVHLGEDDKK----------LVQA 88 +RW + G + + + + L + K+ + Sbjct: 62 AEHRWSSWAAPKNADGSFDHDSALTGDDLITYVDEELFPYLKGFKQRASSADTIEYKIGE 121 Query: 89 VFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQ 148 +F + + + MD L + + K + + +YE + KN G+ Sbjct: 122 IFGEIKNKFQSGYSLRDALELMDKLQFKS---QKEKHELSHLYETKI-KNMGNAGRNGGE 177 Query: 149 YFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVK-SQTNDLDDLDGDTQDFQ 207 Y+TPRPLI+ +I + P E + D A G+AGFL E+ +++ L D Sbjct: 178 YYTPRPLIRAMIKVASPTIGETIYDGACGSAGFLCESYDHLRYGSDGKEAKLSVDQLRSL 237 Query: 208 IHRAFIGLELVPGTRRLALMNCLLHDIE-GNLDHGGAIRLGNTLGSDGENLPKAHIVATN 266 F G E +A+MN +LH I+ N+ H + +D + + I+ N Sbjct: 238 QTSTFYGKEKKSLAYVIAIMNMILHGIDTPNILHTNTLADN---LADVQEKDRYDIILAN 294 Query: 267 PPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTD-IR 325 PPFG I + F T F+QH I+ L GGRAAVV+ + L + +R Sbjct: 295 PPFGGKERKEIQQNFPIKTGETAFLFLQHFIKYLKAGGRAAVVIKNTFLSNSDNASKSLR 354 Query: 326 RDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMP 385 ++L++ C+LHT+L P G F GVKT VLFF KG T W Y L Sbjct: 355 KELLESCNLHTVLDCPGGTFLGAGVKTVVLFFEKGAA---------TRKTWYYQL-DPGR 404 Query: 386 SFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATS 445 S GK P D+ L+ F + + E E S+ + +V + + A Sbjct: 405 SLGKTNPLNDDDLKEFIELQKDQ-------QESEKSWVVDFKDVDQESFDLSVKNPNAPE 457 Query: 446 RWRKFSREWIRTA 458 S E I Sbjct: 458 EAPLRSPEEILAE 470 >UniRef50_C0E6A6 Putative uncharacterized protein n=2 Tax=Corynebacterium RepID=C0E6A6_9CORY Length = 500 Score = 280 bits (715), Expect = 1e-73, Method: Composition-based stats. Identities = 122/516 (23%), Positives = 207/516 (40%), Gaps = 72/516 (13%) Query: 25 QNYVNELASLLFLKMCKETGQEAEY-----------------LPEGYRWDDLKSRIGQEQ 67 + + + LLF++ E E + E RW +L + Sbjct: 1 MDVIEQFTYLLFIRQLDERQNELDQKKLLGVPVHDEEIIFTTEQEDLRWKNLMQIGDPTE 60 Query: 68 L--QFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRD 125 L ++ L + +F + S I+ P + + ++ LD N RD Sbjct: 61 LHETMATRVFPFLKTMGTGTLAVLFRDASFGISSPSTLWKTMELINDLDIKN------RD 114 Query: 126 DFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEA 185 GD+YE +L K A GQ+ TP+ +I ++ L+ P+ E + DPA GTAGFLI A Sbjct: 115 ITGDLYEYMLSKLATS--GTNGQFRTPQHIIDLLVELMAPKLGERIIDPACGTAGFLINA 172 Query: 186 DRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE-GNLDHGGAI 244 ++K + D + + ++ F G + R+A MN +H E N+ + ++ Sbjct: 173 SEWMKRTYRE-DLYNTNERERFYRDTFTGYDFDRSMVRIAAMNSYMHGFEKPNISYRDSL 231 Query: 245 RLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHP---TSNKQLCFMQHIIETLH 301 G G ++ NPPF + + T +L F+ + L Sbjct: 232 --GEFPEMSGGGGDLYDVILANPPFSGSLDAERVDPVIRKLANTKKTELLFLARFLTLLK 289 Query: 302 PGGRAAVVVPDNVLFEGGKGTDI-RRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTK 359 GGRAAV+VP+ VLF K + R++L++ L +++LP+G+F GV T VL FTK Sbjct: 290 VGGRAAVIVPEGVLFGSTKAHKVLRKELVENQKLDAVIKLPSGVFKPYSGVSTAVLCFTK 349 Query: 360 GTVANPNQDKNCTDDVWVYDLRTNMPSF-GKRTPFTDEHL------QPFERVYGEDPHGL 412 D TD+VW YD+ + S KRTP E+L +P + Sbjct: 350 -------TDSGGTDEVWFYDMLADGRSLDDKRTPLLPENLLGPTPHEPITAENQFEDPAP 402 Query: 413 SPRTEGEWSFN---------------------AEETEVADSEENKNTDQHLATSRWRKFS 451 T+ + + N E++ ++ + T L+ +R+++ Sbjct: 403 VQLTDEQLAKNNLPDLLARFRNRTTTEPGRARTEQSFTVGIDDIRATGYELSMNRYKEIV 462 Query: 452 REWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAA 487 E T + ++ + D AD+L L Sbjct: 463 FEDEDTRDPKDI-LNEITQLDGEIADALSTISGLLG 497 >UniRef50_B3EE94 N-6 DNA methylase n=3 Tax=Bacteria RepID=B3EE94_CHLL2 Length = 846 Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats. Identities = 112/469 (23%), Positives = 189/469 (40%), Gaps = 41/469 (8%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEG------- 53 M + D ++ D L ++ V ++ L K + E+E L Sbjct: 1 MLDTDTKRRIDTARDILVGKVPDPKSQVEQITIALIYKFMDDMDAESEELGGKRKFFTGN 60 Query: 54 ---YRWDDLKSRI--GQEQLQFYRKMLVHLGEDD--KKLVQAVFHNVSTTITEPKQITAL 106 Y W R G E L Y + + + E+ L + +F N +P+ + A Sbjct: 61 FVRYGWAKFMDRSLGGHEMLGLYSEGIAKMPENPGIPALFRDIFKNAYLPYRDPETLKAF 120 Query: 107 VSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQ 166 + +D + + GD +E LL ++ AGQ+ TPR +I ++ +L PQ Sbjct: 121 LKIIDEFTYDHSER------LGDAFEYLLSVLGSQ--GDAGQFRTPRHIIDFMVEILVPQ 172 Query: 167 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDF--QIHRAFIGLELVPGTRRL 224 E + DPA GTAGFLI A +++ D D T D ++ R F G ++ P RL Sbjct: 173 KNETILDPACGTAGFLISAYKHILRTNTDTDGHSTLTPDEKGRLARNFKGYDISPDMVRL 232 Query: 225 ALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPF-GSAAGTNITRTFVH 283 +L+N LH I +TL S+ A ++ NPPF G + F Sbjct: 233 SLVNLYLHGF-----TDPHIFEYDTLSSEERWNEFADVILANPPFMSPKGGIKPHKRFSI 287 Query: 284 PTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKG-TDIRRDLMDKCHLHTILRLPT 342 ++ F+ ++ E L P GRA ++VP+ ++F+ ++R+ L++ L ++ LP Sbjct: 288 QAKRSEVLFVDYMAEHLTPAGRAGIIVPEGIIFQSQMAYKELRKMLVEN-SLVAVISLPA 346 Query: 343 GIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFG-KRTPFTDEHLQP 400 G F GVKT++L K +D + + + + G +R L Sbjct: 347 GCFNPYSGVKTSILILDKSLA-------RQSDTIAFFKVENDGFGLGAQRRAIEKNDLPQ 399 Query: 401 FERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRK 449 + L R E V + N D +L+ R+R+ Sbjct: 400 VQAELAAHLQALRSRAATESHAITTGLIVPKEKIATNGDYNLSGERYRE 448 >UniRef50_O27025 Type I restriction modification enzyme, subunit M n=6 Tax=Archaea RepID=O27025_METTH Length = 616 Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats. Identities = 112/550 (20%), Positives = 203/550 (36%), Gaps = 100/550 (18%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETG---------------- 44 + D+ L D +R + +Y + LLF+K + Sbjct: 116 LGRADIERILKGAADLIR----TRVDYK-FILVLLFMKQMSDKWMMEYQKAYEDAIKEYG 170 Query: 45 ---QEAEYLP-----------EGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVF 90 +EA E Y WD+++ + ++F L +L E + V Sbjct: 171 LSEEEARLEARNSAYHDLDIKEEYLWDNIRKDVENLPIKFA-GALKNLAELNPAFKDVVD 229 Query: 91 HNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYF 150 T+ ++ ++ + L D GD YE +L+ A TK+ G+ + Sbjct: 230 AFDFVEFTQSQENREILRQLVELFSEKKLTNVDPDILGDAYEWILRYFAP-TKAKEGEVY 288 Query: 151 TPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHR 210 TPR +I+ ++ +L P+P E V DPA+ + G LI + +YVK + + L Sbjct: 289 TPREVIRLLVEILDPKPGESVYDPASASNGMLIISHKYVKETYGEAERLF---------- 338 Query: 211 AFIGLELVPGTRRLALMNCLLHDI-EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPF 269 G E+ T L MN +HDI + ++ HG + SDG + + +V NPP+ Sbjct: 339 -LYGQEVNRKTMALGSMNMYIHDIKDHHIAHGDTLLYPKFKESDG--IMRFDVVIANPPW 395 Query: 270 GSA-----------AGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEG 318 R + ++QH+I + GR VV+ + LF G Sbjct: 396 NQDGYGEDTLKKGDYWRERFRYGFVNKQSADWAWIQHMIASAKDDGRIGVVIDNGCLFRG 455 Query: 319 GKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVY 378 G+ IR +++ + ++ LP +FY G ++ K ++D+ V Sbjct: 456 GREKSIRSAVLEDDLIEAVILLPEKLFYNTGAPGAIIILNK------DKDEERRGKVLFI 509 Query: 379 DL---RTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEEN 435 + P K +D +++ Y E+ + + V D +E Sbjct: 510 NAGEEYEKHPEVRKLNILSDGNIERILEAY------------REFQGDDGFSRVVDLDEI 557 Query: 436 KNTDQHLATSRWRKFSREWIRTAKSDSLDIS--WLKDKDSIDADSLPEPDVLAAEAMGEL 493 + D +L + F E + +D++ W++ L E + AE + Sbjct: 558 RENDYNLNVPLY-AFPEEELE-----DIDVAGEWMR---------LSEIEEELAEVDERI 602 Query: 494 VQALSELDAL 503 L EL + Sbjct: 603 RGYLDELGYM 612 >UniRef50_A2TPX2 Type I restriction modification system M subunit (Site-specific DNA-methyltransferase subunit) n=2 Tax=Flavobacteriaceae RepID=A2TPX2_9FLAO Length = 544 Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats. Identities = 119/559 (21%), Positives = 209/559 (37%), Gaps = 106/559 (18%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQ-NYVNELASLLFLKMCKETGQEAEYLPEGYRWDDL 59 M +K+ + +GG+S V +L+ L+F+K E +E + D Sbjct: 1 MITTTHKSKVDAIWGTFWNGGISNTLQIVEQLSYLIFIKNLDEVETRSELKKQRTG-VDF 59 Query: 60 KSRIGQEQLQFYRKMLVHLGEDDKKLV-----QAVFHNVSTTITEPKQ------------ 102 +EQ QF K + + + + ++ +F + E Sbjct: 60 TPIFNEEQQQFRWKNIKEMDVNTRHMLFADTVSGIFPFLRNLGVETSAFAKHMRNASYGM 119 Query: 103 ----ITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKT 158 + +++ +D LD +D GD++E +L K E +GQ+ TPR +I+ Sbjct: 120 KAQVLDSVIEQLDQLDM------DEQDAKGDIFEYMLSKM--EGGGTSGQFRTPRHIIRL 171 Query: 159 IIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELV 218 ++ L++P + + DP+AGTAGFL+ A Y+ + + ++ ++ F G+E Sbjct: 172 MVELMQPTLEDTICDPSAGTAGFLVGAKEYIDTHYDVMER--EAAKEHIDTMMFNGMEFD 229 Query: 219 PGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPF-GSAAGTNI 277 R+A MN LH +E I + + D + +V NPPF G+ +I Sbjct: 230 ATMLRIASMNLFLHGVEA-----PNIIDVDAVSKDNDIADAYTLVLANPPFKGTIDKESI 284 Query: 278 TRTF--VHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKG-TDIRRDLMDKCHL 334 V TS +L F+ ++ + GGRAAV+VPD VLF K IR +++ L Sbjct: 285 ASDLKTVTSTSKTELLFLALMLRQMKMGGRAAVIVPDGVLFGSSKAHKSIREEIVANHKL 344 Query: 335 HTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSF-GKRTP 392 ++ +P+G+F GV T ++ FTK TD VW YD+ + S KR Sbjct: 345 EAVISMPSGVFKPYAGVSTAIMIFTK-------TGSGGTDHVWFYDMLADGKSLDDKRNL 397 Query: 393 FTDE---------------------------HLQPFERVYG------------------- 406 D +L Y Sbjct: 398 LVDAETFDAFSFGDAFTKVTSEELKTLHDNFNLPQILDHYKYLKSDYFEKMHTAEGELLQ 457 Query: 407 --------EDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTA 458 + L ++ ++ + E K D L+ +R+++ E + Sbjct: 458 VKDTPENLGFSNFLDGTCTHNYADRTSQSFLVPLAEIKENDWDLSINRYKEIVYEEVEYD 517 Query: 459 KSDSLDISWLKDKDSIDAD 477 + I + D Sbjct: 518 APTEI-IGRINKLSEERID 535 >UniRef50_C7BP30 Type I restriction enzyme, modification subunit n=3 Tax=Bacteria RepID=C7BP30_PHOAA Length = 721 Score = 278 bits (712), Expect = 2e-73, Method: Composition-based stats. Identities = 109/571 (19%), Positives = 200/571 (35%), Gaps = 120/571 (21%) Query: 3 NNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA-EYLPEGYRWDDLKS 61 +L ++W + +++R G V ++ + LF + E E + + L Sbjct: 7 RAELHRQIWAIANDVR-GSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSIHYAALDD 65 Query: 62 RIGQEQL---------------QFYRKMLVHLGEDDK----------------------K 84 I + + Q + + +D+ Sbjct: 66 SIITDDIKDDAIKTKGYFIYPSQLFCNVAAKASTNDRLNADLNSIFVAIESSAYGYPSEA 125 Query: 85 LVQAVFHNVSTTIT--------EPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQ 136 ++ +F + TT + ++ A++ ++ L N + D FGD YE L+ Sbjct: 126 DIKGLFADFDTTSNRLGNTVKDKNSRLAAVLKGVEGLKLGNFNDHQ-IDLFGDAYEFLIS 184 Query: 137 KNANETKSGAGQYFTPRPLIKTIIHLLKPQPREV--VQDPAAGTAGFLIEADRYVKSQTN 194 A G++FTP+ + K I L V + DPAAG+ L++A ++ + Sbjct: 185 NYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTHVNKIYDPAAGSGSLLLQAKKHFDNHI- 243 Query: 195 DLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDG 254 I F G E+ T LA MN LH+I + IRLGNTL Sbjct: 244 -------------IEEGFFGQEINHTTFNLARMNMFLHNINYDKF---DIRLGNTLTEPH 287 Query: 255 ENLPK-AHIVATNPPFGSAAGTNITRTFV-----------HPTSNKQLCFMQHIIETLHP 302 K + +NPP+ + T + P S F+ H + L Sbjct: 288 FGDEKPFDAIVSNPPYSVKWIGSDDPTLINDERFAPAGVLAPKSKADFAFVLHALNYLSA 347 Query: 303 GGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTV 362 GRAA+V + + GG IR+ L+D ++ T++ L +F+ + N+L +K Sbjct: 348 KGRAAIVCFPGIFYRGGAEQKIRQYLVDNNYVETVISLAPNLFFGTTIAVNILVLSKHKT 407 Query: 363 ANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSF 422 V D TD H+ +V+ S Sbjct: 408 DTS---------VQFIDASGLFKKETNNNILTDAHIAQIMQVF------------SSKSD 446 Query: 423 NAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEP 482 + E+ D +L+ S + D+ +I + + ++ ++ + Sbjct: 447 VDHLAKSVAFEQVAGNDYNLSVSSY---------VEAKDTREIVDITELNAELKTTVSKI 497 Query: 483 DVLAAEAMGELVQALSELDALMRELGASDEA 513 D L + +DA++ E+G S++A Sbjct: 498 DQLRKD-----------IDAIVAEIGGSEDA 517 >UniRef50_A0KWT9 N-6 DNA methylase n=5 Tax=Bacteria RepID=A0KWT9_SHESA Length = 513 Score = 278 bits (711), Expect = 3e-73, Method: Composition-based stats. Identities = 112/531 (21%), Positives = 207/531 (38%), Gaps = 70/531 (13%) Query: 1 MNNNDLVAKLWKLCDNLRDGGV-SYQNYVNELASLLFLKMCKETGQEAE----------- 48 M L + + KL + GG+ + + ++ L++ ++ Q E Sbjct: 1 MITGKLKSDINKLWEEFWTGGIANPLTVIEQITFLMYARLLDLHEQRDEKRAKLRGIDFK 60 Query: 49 ----YLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKK---LVQAVFHNVSTTITEPK 101 + RW + L+ R + ++ L + I +P Sbjct: 61 RRFNDNQQHIRWHRFIHQDKDTMLKLVRDEVFPHFKNASGEGSLFGEFMKDAQCMIQKPT 120 Query: 102 QITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIH 161 + + V +D L + D GD+YE LL K T GQ+ TPR +I+ ++ Sbjct: 121 LMESAVEMIDKLPL------EDSDTKGDLYEYLLSKLT--TAGINGQFRTPRHIIRAMVE 172 Query: 162 LLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLD----------------------DL 199 +L P + + DP+ GTAGFL A Y+ + + DL Sbjct: 173 MLDPTVEDRIVDPSCGTAGFLTVAYEYLLEKYTSPEGVHTETVVGDNGEAQQVKIYSGDL 232 Query: 200 DGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI-EGNLDHGGAIRLGNTLGSDGENLP 258 + +D+ F G + R+A MN ++H + E ++ + + T ++ Sbjct: 233 LVEHRDYVNTDMFHGFDFDATMLRIAAMNLVMHGVTEPDVHYQDTLSGSFTERFPNQSKD 292 Query: 259 KAHIVATNPPF-GSAAGTNITRTFVH--PTSNKQLCFMQHIIETLHPGGRAAVVVPDNVL 315 + NPPF GS ++ + T +L F+ I+ L GG+ A++VPD VL Sbjct: 293 AYTLCIANPPFKGSLDEEDVDPAILRMVKTKKTELLFVAQILRLLKNGGKTAIIVPDGVL 352 Query: 316 F-EGGKGTDIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTD 373 F +R+ +++ L ++ LP+G+F GV T +LF TKG+ TD Sbjct: 353 FGSSNAHQQLRQHIIENNELQAVVSLPSGVFKPYAGVSTAILFITKGS---------RTD 403 Query: 374 DVWVYDLRTNMPSF-GKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADS 432 VW YD++ + S KRTP D L + ++ E E + +++ Sbjct: 404 HVWFYDVQADGMSLDDKRTPIKDNDLPDLVAKFKARDKAIA---ETEQNDRSQKAFWVSK 460 Query: 433 EENKNTDQHLATSRWRKFSREWIRTAKSDSL--DISWLKDKDSIDADSLPE 481 + L+ +R+++ + + + L++ D +L + Sbjct: 461 ADIVGNKYDLSINRYKQVVYAEQQYDDPKVILSKLVALENDILADLKALED 511 >UniRef50_C9KLJ9 Type I restriction-modification system, M subunit n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KLJ9_9FIRM Length = 490 Score = 277 bits (708), Expect = 8e-73, Method: Composition-based stats. Identities = 112/472 (23%), Positives = 203/472 (43%), Gaps = 63/472 (13%) Query: 4 NDLVAKLWKLCDNLRDG-GVS-YQNYVNELASLLFLKMCKETGQEA--------EYLPEG 53 +L + +L D +R+ G++ + ++ LFLK+ ++ +PE Sbjct: 3 TNLGGLVKRLQDIMRNDPGINGDAQRIEQIIWALFLKVYDAKEEDWEMDEDDYHSIIPEP 62 Query: 54 YRWDDLK-------SRIGQEQLQFYRKMLVHLGE--------DDKKLVQAVFHNVSTTIT 98 YRW + + G+E L+F + L K++V+ +F + + Sbjct: 63 YRWQNWAHDDGTGTAYTGEELLEFVNDLFTVLKNLSITPDMPKKKRIVKTMFEETNQYMK 122 Query: 99 EPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKT 158 + + +++ +D +D + GD+YE +L++ ++ AG+++TPR + Sbjct: 123 DGVLLRQVINVIDDIDL---ESYDNMHALGDIYETILKEL--QSAGRAGEFYTPRAVTDF 177 Query: 159 IIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELV 218 + ++P E + D A GT GFL+ R ++ Q DD + + G+E Sbjct: 178 MADRIEPHLGERMADFACGTGGFLVSWLRELEKQIAAPDD------RALWNHSVYGIEKK 231 Query: 219 PGTRRLALMNCLLHDIE-GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNI 277 LA+ N LLH ++ ++DHG ++ L + L D K + NPP+G + ++ Sbjct: 232 QFPYMLAITNLLLHGVDNPDIDHGNSL-LHDVL--DYTEKDKFDKILMNPPYGGSEKKDV 288 Query: 278 TRTFVHPTSNKQL--CFMQHIIETLHPGGRAAVVVPDNVLF-EGGKGTDIRRDLMDKCHL 334 F ++ + FM I+ L GGRAAVV+PD LF +I++ LM +C L Sbjct: 289 MSHFPDDLADSETADLFMSVILYRLKQGGRAAVVLPDGFLFGTDNTKVNIKKKLMAECDL 348 Query: 335 HTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVY--DLRTNMPSFGKRT 391 HTI+RLP +F + TN+LFF + + T+ +W Y D+ F K Sbjct: 349 HTIVRLPGSVFAPYTSITTNILFFDRT---------HPTEKIWFYRLDMPEGYKHFSKTK 399 Query: 392 PFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLA 443 P EH P + + + L + + +E +L Sbjct: 400 PMRLEHFDPVKAWWDDRQEILEGD--------FPKAKCYTIDEIAAGGYNLD 443 >UniRef50_Q31PC9 Type I restriction-modification n=27 Tax=cellular organisms RepID=Q31PC9_SYNE7 Length = 675 Score = 276 bits (706), Expect = 1e-72, Method: Composition-based stats. Identities = 101/489 (20%), Positives = 178/489 (36%), Gaps = 91/489 (18%) Query: 3 NNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK------------ET--GQEAE 48 +L A +W + D LR G +Y + L+ E + Sbjct: 98 RQNLSAFIWSVADLLR-GDYKQSDYGKIILPFTVLRRLDCVLAPTKAAVLEEKVLRESQG 156 Query: 49 YLPEGYRWDDLKSRIGQE-------QLQFYRKMLVHLGEDDKKLVQAV------------ 89 PE + L + GQ L+ ++GE+ + +Q Sbjct: 157 LAPEPF----LLKKAGQNFCNTSPLDLKQLMGDADNIGENLRAYIQGFTPAVRDIFDSFE 212 Query: 90 FHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQY 149 FH + + + + +D + S + G ++E L++K A + AG++ Sbjct: 213 FHLQIDRLEKAGLLYLVTERFAQIDLHPDT--VSNAEMGLVFEELIRKFAELSNETAGEH 270 Query: 150 FTPRPLIKTIIHLL---------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLD 200 FTPR +I+ +++LL +P + DP AGT G L A+ ++ Sbjct: 271 FTPREVIRLMVNLLFIEDDAALTQPGIVRSLYDPTAGTGGMLSVAEEHLTELNPSAR--- 327 Query: 201 GDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKA 260 G EL P + + + L+ N+ + I GNTL D K Sbjct: 328 ---------LVLSGQELNPESYAICKADMLIKG--QNIQN---ICFGNTLSDDKLPDAKY 373 Query: 261 HIVATNPPFGSAAGT------------NITRTF---VHPTSNKQLCFMQHIIETLHP--- 302 + +NPPFG + F + S+ L F+ H+I + P Sbjct: 374 DYMLSNPPFGVEWKKIQKEVQREAEQLGYSGRFGPGLPRVSDGSLLFLLHLISKMRPASE 433 Query: 303 -GGRAAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFT 358 G R +V+ + LF GG ++IRR +++ + I+ LPT +FY G+ T + + Sbjct: 434 GGSRLGIVLNGSPLFTGGAGSGESEIRRYVLENDLVEAIIALPTDMFYNTGISTYIWILS 493 Query: 359 KGTVANPNQDKNCTDDVWVYD-LRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTE 417 A+ D + +R ++ S KR ++E + R++G Sbjct: 494 NRKPASRKGKVQLIDASGFWQKMRKSLGS--KRKELSEEQIAEITRLFGNFEEADRDGKP 551 Query: 418 GEWSFNAEE 426 F EE Sbjct: 552 VSKIFRNEE 560 >UniRef50_B2A7T0 N-6 DNA methylase n=13 Tax=Bacteria RepID=B2A7T0_NATTJ Length = 673 Score = 276 bits (706), Expect = 1e-72, Method: Composition-based stats. Identities = 90/489 (18%), Positives = 179/489 (36%), Gaps = 85/489 (17%) Query: 4 NDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK---------------------- 41 + V +W + D LR G +Y + LK Sbjct: 7 QEKVNFIWSIADLLR-GDYKRSDYGKVILPFTVLKRLDCALKPTKNKVLEEYKMLKDSGI 65 Query: 42 --------ETGQEAEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAV-FHN 92 + + + + ++ +K+ R + + + +++ FH+ Sbjct: 66 QNPEPVLNDITGQHFHNTSQFDFEKMKNEP-DNIGDNLRHYINGFSTNARDIIEYFNFHD 124 Query: 93 VSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTP 152 + + + +VS +D S + G ++E L++K + ++ AG++FTP Sbjct: 125 HLERLEQSNLLYLIVSRFSEIDL--SPEKVSNLEMGYIFEELIRKFSEQSNETAGEHFTP 182 Query: 153 RPLIKTIIHLLKPQPRE---------VVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDT 203 R +I+ +++LL + + + DPA GT G L A Y++ ND Sbjct: 183 REVIRLMVNLLFNEDSDLLQKEGLLRTIYDPACGTGGMLSVARDYLRELNNDA------- 235 Query: 204 QDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIV 263 G EL P + + + ++ ++ I+ GN+ +DG + + Sbjct: 236 -----KLEMFGQELNPESYAICKADMMIKGLDP-----DNIKFGNSFTNDGFSDNTFDYM 285 Query: 264 ATNPPFGSAAG---------------TNITRTFVHPTSNKQLCFMQHIIETL---HPGGR 305 +NPPFG + + ++ + F+QH+I + + G R Sbjct: 286 LSNPPFGVEWKKIEKEIKEEHENLGFSGRYGAGLPRINDGSILFLQHMISKMQHQNGGSR 345 Query: 306 AAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTV 362 A+V+ + LF G ++IR+ +++ L I+ LP +FY G+ T V T Sbjct: 346 IAIVLNGSPLFTGDAGQGESNIRKWIIENDLLEAIVALPEQLFYNTGINTYVWVLTNRKR 405 Query: 363 ANPNQDKNCTDDVWVY-DLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWS 421 + V Y +R ++ KR + E + ++YGE G + Sbjct: 406 PWRKGKIQLINAVEFYKKMRKSLGE--KRHEISPEQIDKISKIYGEFKEGEYSKIFDNED 463 Query: 422 FNAEETEVA 430 F + V Sbjct: 464 FGYYKITVE 472 >UniRef50_A6W079 N-6 DNA methylase n=16 Tax=Bacteria RepID=A6W079_MARMS Length = 545 Score = 276 bits (706), Expect = 1e-72, Method: Composition-based stats. Identities = 122/523 (23%), Positives = 203/523 (38%), Gaps = 94/523 (17%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQ-NYVNELASLLFLKMCKETGQEAEYLPEG------ 53 M + + KL + GG++ + +++ L+F +M + E Sbjct: 1 MLTGPIRNDIDKLWEKFWTGGITNPLTVIEQISYLMFARMLDMQEEAEERKANRTGKAFV 60 Query: 54 -----------YRWDDLKSRIGQEQLQFYRKM-------------LVHLGEDDK----KL 85 RW + K+ G++ + + + +GED Sbjct: 61 RLFPDTKEGQLLRWKNFKNLSGKDLHKHLKNEVYPYFSKLGQVADIDQVGEDTPVKAMGH 120 Query: 86 VQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSG 145 + + I + A + +DSL D GD+YE LL K T Sbjct: 121 ISDYMEDADLEIKNESVLVAALEMVDSLPL------NQSDVKGDIYEYLLSKLT--TAGI 172 Query: 146 AGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQD 205 GQ+ TPR +I +I ++ PQP + + DP+ GTAGFL Y+ + +++ D + Sbjct: 173 NGQFRTPRHIIDAMIEIIDPQPWDTICDPSCGTAGFLARTMEYLNRKHTSPENIWTDEEG 232 Query: 206 FQIH--------------RAFIGLELVPGTRRLALMNCLLHDIEG-NLDHGGAIRLGNTL 250 Q + F G + R++ MN +LH + G N+ + + Sbjct: 233 NQHYPGDLLENYREHISDDMFWGFDFDTTMLRVSSMNMMLHGVNGSNVLYQDTLNKSIRE 292 Query: 251 GSDGENLPKAHIVATNPPF-GSAAGTNITRTFVH--PTSNKQLCFMQHIIETLHPGGRAA 307 + ++ NPPF GS TN + T +L F+ HI+ +L GGRAA Sbjct: 293 NFPQQEENFFDVILANPPFKGSLDETNTNPELLSMVKTKKTELLFVAHILRSLKLGGRAA 352 Query: 308 VVVPDNVLFEGGKG-TDIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANP 365 V+VPD VLF K +R++L++ L I+ LP+G+F GV T +L FTKG Sbjct: 353 VIVPDGVLFGSSKAHQQLRQELIENNQLEGIISLPSGVFKPYAGVSTAILLFTKG----- 407 Query: 366 NQDKNCTDDVWVYDLRTNMPSF-GKRTPFTDEHLQPFERV-------------------Y 405 T+ VW YDL+ + S KRTP E + Sbjct: 408 ----GTTERVWFYDLQADGLSLDDKRTPLKGEGTNDLPDAIAKWKAYRQLVESNFDFSQF 463 Query: 406 GEDPHGLSPRTEGE--WSFNAEETEVADSEENKNTDQHLATSR 446 G+D G + + ++ V D+ + + L+ +R Sbjct: 464 GDDAQGCANPENAAAYFQDKTQKAFVVDAADIASNKYDLSINR 506 >UniRef50_D2NT11 Type I restriction-modification system methyltransferase subunit n=1 Tax=Rothia mucilaginosa DY-18 RepID=D2NT11_9MICC Length = 569 Score = 275 bits (703), Expect = 3e-72, Method: Composition-based stats. Identities = 95/516 (18%), Positives = 179/516 (34%), Gaps = 101/516 (19%) Query: 3 NNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYR------- 55 L + +W++ ++LR G V ++ + +LF + E +A ++ E Y Sbjct: 50 RAQLHSTIWRIANDLR-GSVDGWDFKQYVLGMLFYRYLSE--SQARFIDENYTLKGPFVE 106 Query: 56 ---------------------------WDDL--KSRIGQEQLQFYRKMLVHLGEDDKKL- 85 + ++ K+R Q + + E + Sbjct: 107 LKDEDCNEGGRQVVLRERGFFLLPSQLFSNVYAKARQDQNLNETLANVFKAFEESARGTE 166 Query: 86 ----VQAVFHNVSTTITE--------PKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEG 133 V+ +F + + + + L+ + ++ G D FGD YE Sbjct: 167 SEENVKGLFDDFVLDSNKLGVSPAARHENLLKLMDAVAGMNLGKGYEDSENDAFGDAYEY 226 Query: 134 LLQKNANETKSGAGQYFTPRPLIKTIIHLL----KPQPREVVQDPAAGTAGFLIEADRYV 189 L+ A G+Y+TP+ + + + + V DPA G+ L++ R + Sbjct: 227 LMGMYAANAGKSGGEYYTPQEVSELLAKIAMDGRDADKIRSVYDPACGSGSLLLKFKREL 286 Query: 190 KSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI---EGNLDHGGAIRL 246 + L FIG E+ T L MN +LH + E ++ HG + Sbjct: 287 GKNSKGLR--------------FIGQEINLTTYNLCRMNMMLHGVPVDEFSIAHGDTLID 332 Query: 247 GNTLG-SDGENLPKAHIVATNPPFGSAAGTNITRTFVH-----------PTSNKQLCFMQ 294 + + + + +NPP+ + + T H P S L F Sbjct: 333 PKHRNGKNPKFVEPFGAIVSNPPYSTKWKGDDDPTLKHDDRYAPAGVLAPKSKADLAFTM 392 Query: 295 HIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNV 354 H++++LH G AA+V VL+ G IR L+ + + +++LP+ +FY + T + Sbjct: 393 HMLKSLHEAGTAAIVEFPGVLYRSGAERTIREYLLIENRVDAVIQLPSNLFYGTSIATCI 452 Query: 355 LFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSP 414 L KG + V D + H + V L+ Sbjct: 453 LVLKKG--------RRKDHSVLFVDASALFDKGKNQNILGKSHREKILDV-------LAT 497 Query: 415 RTEGE-WSFNAEETEVADSEENKNTDQHLATSRWRK 449 R E E +S ++ + E N + R+ Sbjct: 498 REEREHFSALVPVQKLLEQEANLAVSSWVEPEDTRE 533 >UniRef50_B4RYU9 Type I restriction-modification system methyltransferase subunit n=5 Tax=Bacteria RepID=B4RYU9_ALTMD Length = 548 Score = 275 bits (702), Expect = 4e-72, Method: Composition-based stats. Identities = 123/519 (23%), Positives = 211/519 (40%), Gaps = 84/519 (16%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVS-YQNYVNELASLLFLKMCKE-----------TGQEAE 48 M L ++ ++ + GG++ + + + LLF++ E E E Sbjct: 1 MLTGKLKNQVDEIWEAFWTGGITNPISVIEQFTYLLFIRRLDEIHTARVKNALVMETEIE 60 Query: 49 Y-----LPEGYRWDDLKSRIGQEQLQFYRKMLVHLGED---DKKLVQAVFHNVSTTITEP 100 + YRW K++ Q + R + + + + + Sbjct: 61 KPIFGTEQDSYRWSKFKNQDPQVMFELVRDKIFPFIKTINGEDTTFAKHMRDAIFMVPTA 120 Query: 101 KQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTII 160 + +V+ +D +D RD GD+YE +L K ++ GQ+ TPR +I+ ++ Sbjct: 121 GLLDRVVTMIDKIDM------DDRDTKGDLYEYMLSKL--QSSGTNGQFRTPRHIIQMMV 172 Query: 161 HLLKPQ----PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLE 216 + P+ +V+ DPA+GT GFL+ A+ YV++ +++ F ++ F + Sbjct: 173 QMTAPKLDGNKSDVICDPASGTCGFLMAAEEYVRNTQGGALMRPENSKHFH-NQMFNAYD 231 Query: 217 LVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENL--PKAHIVATNPPF-GSAA 273 R+ MN +LH +E + ++L GE+ K ++ NPPF GS + Sbjct: 232 FDQHMLRIGAMNLMLHGVE-----HPVVEYRDSLSDQGEHNIKDKFTLILANPPFKGSVS 286 Query: 274 GTNITRTFVH--------------------------PTSNKQLCFMQHIIETLHPGGRAA 307 ++ + P+ +L F+ I+ L PGGRAA Sbjct: 287 YDDLAPDLLTALGKTPKKATAKTETDEEGNKKKKKGPSEKTELLFLALILRMLQPGGRAA 346 Query: 308 VVVPDNVLFEGGK-GTDIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANP 365 VVVPD VLF K +IR+ L+++ L ++ LP+G+F GV T +LFFTK Sbjct: 347 VVVPDGVLFGSTKSHKEIRKTLVEEHKLEAVVSLPSGVFKPYAGVSTAILFFTK------ 400 Query: 366 NQDKNCTDDVWVYDLRTNMPSF-GKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNA 424 + TD+VW YD++ + S KRTP E + E EGE Sbjct: 401 -TNDGGTDNVWFYDMQADGFSLDDKRTPLIKEQ-----ALTTEADAIDYKAAEGENLEKG 454 Query: 425 EETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSL 463 + ++ + N L RW+ E R S Sbjct: 455 QAPSELENHKLNNIPDVLF--RWQHLQNEIGRERTEQSF 491 >UniRef50_D2QLF2 Site-specific DNA-methyltransferase (Adenine-specific) n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QLF2_9SPHI Length = 502 Score = 275 bits (702), Expect = 5e-72, Method: Composition-based stats. Identities = 111/498 (22%), Positives = 207/498 (41%), Gaps = 64/498 (12%) Query: 5 DLVAKLWKLCDNLR--DGGVSYQNYVNELASLLFLKMCKETGQEAE--------YLPEGY 54 +L + + D +R G + +L +LFLK+ + E E +P Sbjct: 4 NLSGIIKSIRDIMREDRGVNGDAQRIEQLGWMLFLKIFDDKDIEMELLADDYQSPIPTDC 63 Query: 55 RWDDLKSR----IGQEQLQFYRKMLVHL--------GEDDKKLVQAVFHNVSTTITEPKQ 102 +W + + G E QF L G L++ VF + + Sbjct: 64 QWRNWAADNEGITGDELQQFVDLTLFPTLKNLPVKDGNRRALLIREVFEGNNNYMKSGIN 123 Query: 103 ITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHL 162 I + + ++ +D+ + + R FGD+YEG+L++ ++ +G+++TPR + + + + Sbjct: 124 IRKICNKLNEIDFNSS---EDRHLFGDLYEGILKEL--QSAGDSGEFYTPRAVTQFMTEM 178 Query: 163 LKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTR 222 + P+ E++ DPA GT GFL+ A +++ + +++ + + G E P Sbjct: 179 VNPRLGEIIFDPACGTGGFLVNAIEHIRQR-----EVNSVDDRLTLQKTIRGCEYKPLPY 233 Query: 223 RLALMNCLLHDIE-GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTF 281 LAL N +LHDIE N+++G ++ + D + + ++ NPPFG F Sbjct: 234 ELALTNLILHDIEVPNIEYGDSLGREYSSIRDRD---RVDVILANPPFGGTVANGNEGNF 290 Query: 282 VH--PTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILR 339 T F+ I+ L GRAA+V+PD L G +R+ L++ C LHTI+R Sbjct: 291 PANFRTRESADLFLVLIVNLLRTNGRAALVLPDGSLTGEGVKQRVRQKLLEDCDLHTIVR 350 Query: 340 LPTGIFYA-QGVKTNVLFFTKGTV----------------ANPNQDKNCTDDVWVYDLR- 381 LP +F V TN+LFF K + D+ T ++W Y+ R Sbjct: 351 LPNSVFQPYATVATNLLFFEKKRTTGLAAPDSDLPLFSNGETNDSDRYATREIWYYEHRL 410 Query: 382 -TNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQ 440 S+ K + +P + + + R E + ++ + D + + + Sbjct: 411 PEGQKSYSKTKTIQLKEFEPLKAWW-------TNRVESDQAWRVPIQTIIDRKFDLDIKN 463 Query: 441 HLATSRWRKFSREWIRTA 458 +F+ + Sbjct: 464 PNRKEEVMEFNSTELIDR 481 >UniRef50_B1ZYW9 N-6 DNA methylase n=31 Tax=cellular organisms RepID=B1ZYW9_OPITP Length = 563 Score = 274 bits (701), Expect = 5e-72, Method: Composition-based stats. Identities = 113/431 (26%), Positives = 177/431 (41%), Gaps = 56/431 (12%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQ-NYVNELASLLFLKMCKETGQEAEYLP-------- 51 M + +++ L + GG+S + ++ LLFLK + + E Sbjct: 1 MLTGQIRSQIDALWNAFWTGGISNPLEVIEQITYLLFLKRLDDLQKNEENKAARLKLKKL 60 Query: 52 ----------------EGYRWDDLKSRIGQEQLQFYRKMLVHLGED---DKKLVQAVFHN 92 E RW + +E + + D + Sbjct: 61 ERRIFPAAKDAKGRPYEDCRWSRFQHLEAKEMFTVVSEHVFPFLRTLGGDDSTYAHHMKD 120 Query: 93 VSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTP 152 TI P + +V +D + + RD GD+YE +L K A + GQ+ TP Sbjct: 121 ARFTIPTPALLAKVVDLIDQIPM------EDRDTKGDLYEYMLGKIA--SAGQNGQFRTP 172 Query: 153 RPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAF 212 R +I+ ++ L P ++V+ DPA GTAGFL+ A Y++++ ++ D + H F Sbjct: 173 RHIIQLMVELTAPTAKDVICDPACGTAGFLVAAGEYLRTRHPEILR-DTKLRQHFHHHLF 231 Query: 213 IGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSD-GENLPKAHIVATNPPF-G 270 G + R+ MN LLH +E IR ++L D K ++ NPPF G Sbjct: 232 HGFDFDNTMLRIGSMNMLLHGVE-----NPDIRYRDSLAQDHAGEEEKFTLLLANPPFAG 286 Query: 271 SAAGTNITRTF--VHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLF-EGGKGTDIRRD 327 S N + + T +L F+ + L PGGRAAV+VPD VLF +R+ Sbjct: 287 SLDYENCAKDLQQIVKTKKTELLFLALFLRLLKPGGRAAVIVPDGVLFGSSNAHRTLRKL 346 Query: 328 LMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPS 386 L++ L ++ LP G+F GV T +L FTK + TD VW Y + + S Sbjct: 347 LVEDQKLDAVISLPGGVFKPYAGVSTAILLFTK-------TNSGGTDHVWFYKVEADGMS 399 Query: 387 F-GKRTPFTDE 396 KRT Sbjct: 400 LDDKRTELLPS 410 >UniRef50_C5RYW3 Type I restriction-modification system methyltransferase subunit like protein n=5 Tax=Bacteria RepID=C5RYW3_9PAST Length = 533 Score = 274 bits (701), Expect = 5e-72, Method: Composition-based stats. Identities = 98/521 (18%), Positives = 184/521 (35%), Gaps = 80/521 (15%) Query: 5 DLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETG-------------------- 44 L + + LR + + + L+FLK + Sbjct: 14 SLETVMMNCRNALRGKVGGNEKNRDTVMGLVFLKFVGDKFTARRAEIQAQYPEIFWENEA 73 Query: 45 ----QEAEYLPEGYRWDDLKSRIGQEQLQF-YRKMLVHLGEDDKKLVQAVFHNVSTTITE 99 + YL E RW + + + + + E + L A+ N T+ Sbjct: 74 FYRSENVFYLSEHARWSYIVENASSDDIAIKIDTAMADIEERNPPLKGALPQNFYATLGI 133 Query: 100 PKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETK--SGAGQYFTPRPLIK 157 K+ + S +D ++ + +D G + E LQ A ++ G+++TP +++ Sbjct: 134 GKK--EIKSLIDEINKLDNNRFHEKDLIGRVQEYFLQVFAIDSGVGKEKGEFYTPSSIVE 191 Query: 158 TIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLEL 217 I L++P V DP GT G +++ ++V++ + ++ + +G E Sbjct: 192 LIAELIEPYNG-TVYDPCCGTGGMFVQSLKFVENHQGNRKNI-----------SIVGQES 239 Query: 218 VPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNI 277 P T RLA MN L I NL +T D K + + NPPF + Sbjct: 240 NPDTWRLAKMNLALRGIAHNLGESAV----STFTHDQWKDLKVNYIMANPPFNLKDWRDQ 295 Query: 278 TR---------TFVHPTSNKQLCFMQHIIETLHP-GGRAAVVVPDNVLFEGG------KG 321 V P SN ++ H++ L G A ++ + L GG Sbjct: 296 NELTDDPRFAGYAVPPKSNANYAWILHMLSKLDETDGIAGFLLANGALNTGGDKPDTDTE 355 Query: 322 TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFT---KGTVANPNQDKNCTDDVWVY 378 IR+ L++ + I+ LP +FY+ + + K N Q +N +++ Sbjct: 356 YAIRKQLIENDKVEAIIVLPREMFYSTDISVTLWIVNNNKKQRSLNGRQLRNRQNEILFM 415 Query: 379 DLR--TNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENK 436 DLR + K T + + +Y G + E + E + Sbjct: 416 DLRTLNSHIYEKKYVQLTAQEISQVCEIYFNWQTG------KNYQNIPEFCQSVSVETIR 469 Query: 437 NTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDAD 477 + + LA S++ +F L I + + + I + Sbjct: 470 SKNYSLAPSQYIEFV--------DKDLGIDYQTEMNRIQME 502 >UniRef50_A3D8X6 Type I restriction-modification system, M subunit n=22 Tax=Bacteria RepID=A3D8X6_SHEB5 Length = 547 Score = 274 bits (700), Expect = 7e-72, Method: Composition-based stats. Identities = 100/579 (17%), Positives = 192/579 (33%), Gaps = 130/579 (22%) Query: 4 NDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLP------------ 51 NDL LW + D+LR G ++ ++ + + S LFL+ + ++A Sbjct: 7 NDLGKILWDIADSLR-GAMNADDFRDYMLSFLFLRYLSDNYEKAAQKELGRDYPILAKDD 65 Query: 52 ---------EGYR-----------------------WDDLKSRI---GQEQLQFYRKMLV 76 YR W + E LQ Sbjct: 66 KTAPLALWYTEYREDIAEFEKQMRRKLHYVIEPRHLWTSIAELARTQNSELLQTLEAGFK 125 Query: 77 HLGE-DDKKLVQAVFHNVSTTITE-----PKQITALVSNMDSLDWYNGAHGKSRDDFGDM 130 ++ E + +F ++ + + L + + + D GD Sbjct: 126 YIEEQSFDSSFKGLFSEINLNSEKLGKSPTDRNKKLCTIIQKISEGIAEFSTDSDILGDA 185 Query: 131 YEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPRE----------VVQDPAAGTAG 180 YE L+ + A + AG+++TP+P+ + ++ +E V D A G+ Sbjct: 186 YEYLIGEFAAGSGKKAGEFYTPQPISTILSEIVTLDSQEPKTGKKKKLDKVLDFACGSGS 245 Query: 181 FLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI---EGN 237 L+ +++ + G E T LA MN LLH + E Sbjct: 246 LLLNVRKHIVDAGGTVGK-------------IYGQEKNITTFNLARMNMLLHGVKDTEFE 292 Query: 238 LDHGGAIRLGNTLGSDGENLPK--AHIVATNPPFGSAAGTNITR--------TFVHPTSN 287 + HG + + S+ K V NPPF + + + P S Sbjct: 293 IHHGDTLLNDWDILSEMNPAKKLKCDAVVANPPFSYRWDPSEAQGEDFRFKSHGLAPKSA 352 Query: 288 KQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYA 347 F+ H L G A+++P VLF GG IR+ L++ H+ T++ LP +F++ Sbjct: 353 ADFAFLLHGFHFLSDEGTMAIILPHGVLFRGGAEQRIRKKLLNDGHIDTVIGLPANLFFS 412 Query: 348 QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTD------EHLQPF 401 G+ ++ K DD+ + + ++ + ++ Sbjct: 413 TGIPVCIIVLKKCKKY---------DDILFINASEHYEKGKRQNKLREGKGDEPNDIKKI 463 Query: 402 ERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSD 461 Y + +S E+ ++ N N ++++T + Sbjct: 464 VETYQYRSE------DERYSRRVSMAEIEKNDFNLNISRYVST------------AKDTV 505 Query: 462 SLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSEL 500 +D++ + L + + A+ E + LSEL Sbjct: 506 KIDLA-------KEQRKLVDIESSITSALIEHNKFLSEL 537 >UniRef50_Q6IVN0 Predicted HsdM n=1 Tax=uncultured gamma proteobacterium eBACHOT4E07 RepID=Q6IVN0_9GAMM Length = 475 Score = 274 bits (700), Expect = 7e-72, Method: Composition-based stats. Identities = 107/468 (22%), Positives = 200/468 (42%), Gaps = 62/468 (13%) Query: 4 NDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQE------------AEYLP 51 + + LWK DG + +Y+++ + +LFLK ++ ++ + Sbjct: 8 STIRNLLWK-----DDGCNTEVDYLSQFSWILFLKYLEDFEEDLKNRAILDGKQHTPIMD 62 Query: 52 EGYRWDDL------KSRIGQEQLQFYRKMLVHLGEDDKKL----------VQAVFHNVST 95 E Y W S I + + F + L + K + V +F + Sbjct: 63 ERYMWSSWGRNEGKNSLIDDDLISFVSEDLFPYLRNFKTISKDTKSIQYKVGQIFDQIKF 122 Query: 96 TITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPL 155 + + ++ +D ++++ + D+ D+YE +++ + + AGQY+TPRPL Sbjct: 123 LVESGNILRDVLDEIDGIEFFKSSES---DELSDLYEESIKQMG-NSGTSAGQYYTPRPL 178 Query: 156 IKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGL 215 I +I+ + P E V DPA G+ GFLI ++ ++ +L + +G Sbjct: 179 INSIVKAVNPTLGETVLDPACGSGGFLISTFEHILNK----KELTAKEFNILQKDTVLGQ 234 Query: 216 ELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGT 275 E + + +MN ++H IE NTL D ++ + ++ NPPFG + Sbjct: 235 EKIGIPFAIGIMNMIMHGIETPNIIRDNTLSTNTL--DLQDKDRVDVIVANPPFGGSERE 292 Query: 276 NITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLH 335 I F +S FMQ+ ++ L GGRA +++ + L + +R+ L+ +C+LH Sbjct: 293 EIKSNFAIQSSETAYLFMQYFLKKLKIGGRAGLIIKNTFLSNPDAAS-LRQLLLKECNLH 351 Query: 336 TILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTD 395 TI+ LP +F GV+T LFF KG T D++ Y L + + GK P Sbjct: 352 TIVDLP-KVFGTTGVQTVALFFEKGKK---------TKDIFYYQLNLD-RNIGKTNPLNK 400 Query: 396 EHLQPFERVYGEDPH-------GLSPRTEGEWSFNAEETEVADSEENK 436 + L+ F+ ++ ++ + W + V D+ E + Sbjct: 401 KDLEEFDDLFQSRKDSKNSWKISINDIDKETWDLSPTNPNVEDTSEKR 448 >UniRef50_B0S3L0 Type I restriction-modification system DNA methylase n=2 Tax=Bacteria RepID=B0S3L0_FINM2 Length = 579 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 111/580 (19%), Positives = 202/580 (34%), Gaps = 80/580 (13%) Query: 4 NDLVAKLWKLCDNLRDG-GVSYQNYVNELASLLFLKMCKETGQE---------------- 46 +L LW D LR ++ Y + L+FL+ ++ Sbjct: 7 KELKDTLWHSADVLRASAHLAANKYGQPILGLIFLRYADILYKQHKEEIEAEYNRLKGGR 66 Query: 47 -------------AEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNV 93 YLPE +D + K + ED+ + V Sbjct: 67 MEKSIKEISIEKCGFYLPECAYYDFINDAPDDANKATLVKKAMEAIEDENPKMDGVLPKE 126 Query: 94 STTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153 P++ L+SN+ + + + + D FG++YE L A G ++TP Sbjct: 127 VYAQLVPEEEPELLSNIVRI-FKDIPENSTIDIFGEIYEYFLGNFALAEGKDGGTFYTPA 185 Query: 154 PLIKTIIHLLKPQPREVVQ-DPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAF 212 +++ ++ +L PQP E DPA G+ G ++A RY+ + + Q+ Sbjct: 186 TVVRYMVEVLNPQPGEKKFLDPACGSGGMFVQAARYMHNHNAS--------ESEQMKFRC 237 Query: 213 IGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSA 272 G+E P T +LA MN LL+++ G++ + + V NPPF Sbjct: 238 YGVEKEPDTVKLAKMNLLLNNVRGDITEANS-----FYSDPYNAYGQFDYVMANPPFNVD 292 Query: 273 A-------GTNITRTFVHPTS----------------NKQLCFMQHIIETLHPGGRAAVV 309 N T+ P + N ++ + L+ G+AA+V Sbjct: 293 EVVVEKVSDDNRFNTYGVPRNKSKSKKKKSDKKETVPNANYLWIGYFATALNEKGKAALV 352 Query: 310 VPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDK 369 + ++ G DIR+ ++++ + ++ LP+ +F + + + FF K PN DK Sbjct: 353 MANSASDASGSEYDIRKKMIEEGIISQMVTLPSNMFSSVTLPATLWFFDKQK---PNTDK 409 Query: 370 NCTDDVWVYDLRTNMPSFGK-RTPFTDEHLQP---FERVYGEDPHGLSPRTEGEWSFNAE 425 +++ D R + F+DE ++ ++Y + L + + A Sbjct: 410 K--NEILFIDARNVFTQVDRAHRKFSDEQIKNLGVITKLYHGNAQALVDLIDEYKAELAN 467 Query: 426 ETEVADSEENKNTDQHLATSRW--RKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPD 483 E +D +E A W +F + ID D Sbjct: 468 APESSDDKEVLTKSYWQAQIDWLTERFPNGEYADVIGLCKAAPMDGEDGIIDQDYSLNAG 527 Query: 484 VLAAEAMGELVQALSELDALMRELGASDEA-DLQRQLLEE 522 + + E M L A A + + LEE Sbjct: 528 RYVGVVIEDDGLTQEEFKEEMYSLNAEFAALSAEAKTLEE 567 >UniRef50_C7RVC4 N-6 DNA methylase n=2 Tax=Bacteria RepID=C7RVC4_9PROT Length = 606 Score = 273 bits (698), Expect = 1e-71, Method: Composition-based stats. Identities = 127/582 (21%), Positives = 221/582 (37%), Gaps = 110/582 (18%) Query: 2 NNNDLVAKLWKLCDNLRDG-GVSYQ-NYVNELASLLFLKMCK--ETGQEAEYLPEG---- 53 +L + + LR G++ + + L ++FLK ET E E +G Sbjct: 21 TRENLSSLIGTARQILRKDKGLNGDVDRLPLLTWVMFLKFLDDLETVHEEEADLDGKRYQ 80 Query: 54 ------YRWDDLKSRI----GQEQLQF-------------------YRKMLVHLGED--D 82 YRW D +R G E L F Y + L LGE Sbjct: 81 PIIEAPYRWRDWAAREDGINGDELLAFIGQEVTVRADGKVGKGLFSYLRGLAGLGEKGSQ 140 Query: 83 KKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANET 142 +++V VF V + + +++ ++ + + + + +YE +L++ + Sbjct: 141 REVVANVFKGVQNRMVSGYLLRDIINKINGIHFRSS---EEIHTLSHLYESMLREMRDAA 197 Query: 143 KSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGD 202 +G+++TPRP+++ ++ + P+ E V DPA GT GFL+ A ++ +Q + Sbjct: 198 G-DSGEFYTPRPVVRFMVQVTDPKLGETVLDPACGTGGFLVGAYDHIAAQVTTPAEWRKL 256 Query: 203 TQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEG-NLDHGGAIRLGNTLGSDGENLPKAH 261 ++ G E P L MN LLH +E + +G + + ++ + + Sbjct: 257 QRE-----TLFGQEAKPLPYMLVQMNLLLHGLEAPQIAYGNTL---DRRINEIGHGERVD 308 Query: 262 IVATNPPFGSAAGTNITRTFVH--PTSNKQLCFMQHIIETLH-------------PGGRA 306 ++ TNPPFG I F T+ F+Q+I+ L GGRA Sbjct: 309 VILTNPPFGGEEEVGIKANFPPNMQTAETTQLFLQYIMRKLRVVGAPVRGGKPAARGGRA 368 Query: 307 AVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANP 365 AVVVP+ LF G I+ +++ + LHTI+RLP G+F + N+LFF +G Sbjct: 369 AVVVPNGTLFGDGISAVIKEEMLKEFRLHTIVRLPQGVFAPYTDIPANLLFFERG----- 423 Query: 366 NQDKNCTDDVWVYDL--RTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFN 423 TD +W Y++ + K TP + + G Sbjct: 424 ----GPTDTIWYYEMPLPEGRKKYTKTTPLQFDEFASALAWWDAREEG------------ 467 Query: 424 AEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPD 483 + D + +AT W++ E ++ + + Sbjct: 468 -PQAWKVDFAAKRQAAVDVATPNWQRAESE---------------RNAAIALGKPIRGIE 511 Query: 484 VLAAEAMGELVQALSELDALMRELGASDEADLQRQLLEEAFG 525 A AL E +R L A +A Q + +A G Sbjct: 512 QTIQAAANGDKAALQE---QLRALKAGQQAHEQAAKVAQAEG 550 >UniRef50_C6P389 N-6 DNA methylase n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P389_9PROT Length = 815 Score = 273 bits (698), Expect = 1e-71, Method: Composition-based stats. Identities = 108/469 (23%), Positives = 190/469 (40%), Gaps = 41/469 (8%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAE-------YLPEG 53 M + + ++ D L ++ V ++ L K + EAE + Sbjct: 1 MLDAETRRRIDSCRDILVGKVPDPKSQVEQITIALIYKFMDDMDAEAEELGGKRSFFAGE 60 Query: 54 YR---WDDLKS--RIGQEQLQFYRKMLVHLGEDD--KKLVQAVFHNVSTTITEPKQITAL 106 Y W L + G + L Y + + + E+ L + +F N +P+ + Sbjct: 61 YARYGWAKLMAPNMGGFDVLALYSEAIGKMNENPGIPTLFRDIFKNAYLPYRDPETLRIF 120 Query: 107 VSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQ 166 + ++ + + GD +E LL ++ AGQ+ TPR +I ++ ++ PQ Sbjct: 121 LKEINYFTYDHSEK------LGDAFEYLLSVLGSQ--GDAGQFRTPRHIIDFMVEIVDPQ 172 Query: 167 PREVVQDPAAGTAGFLIEADRYVKSQT--NDLDDLDGDTQDFQIHRAFIGLELVPGTRRL 224 E + DPA GTAGFLI A +++ +L D Q I G ++ P RL Sbjct: 173 KGERILDPACGTAGFLISAWKHILKHNTKKNLGDQLTPEQRAYIAANVHGYDISPDMVRL 232 Query: 225 ALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPF-GSAAGTNITRTFVH 283 +L+N LH + +TL S+ + A ++ NPPF G + F Sbjct: 233 SLVNLYLHGF-----TDPHVVEYDTLTSEEKWNETADVILANPPFMSPKGGIKPHKRFSV 287 Query: 284 PTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTG 343 + ++ F+ +I E L P GRAA++VP+ ++F+ G R ++ K L ++ LP+G Sbjct: 288 QATRSEVLFVDYIAEHLSPNGRAAIIVPEGIIFQSGSAYKQLRQMLVKNSLVAVISLPSG 347 Query: 344 IFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFG-KRTPFTDEHLQPF 401 +F GVKT++L K T +V + + + G +R L Sbjct: 348 VFNPYSGVKTSILLLDKWLA-------KRTSEVLFVKVENDGFNLGAQRRAMAGSGLPDA 400 Query: 402 ERVYGEDPHGLSPRTEGEWSFNAEETE--VADSEENKNTDQHLATSRWR 448 Y H T + + V + +N D +L+ R+R Sbjct: 401 AAAYLAFRHSQEDVTPTIFDSSQFRNAHVVEKTRLGENGDWNLSGERYR 449 >UniRef50_Q47163 Type I restriction enzyme EcoprrI M protein n=139 Tax=cellular organisms RepID=T1MP_ECOLX Length = 520 Score = 273 bits (698), Expect = 1e-71, Method: Composition-based stats. Identities = 100/555 (18%), Positives = 186/555 (33%), Gaps = 108/555 (19%) Query: 3 NNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETG------------------ 44 +L ++W++ +++R G V ++ + LF + E Sbjct: 9 RAELHRQIWQIANDVR-GSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSICYAKLDD 67 Query: 45 -------QEAEYLPEGYR------WDDL--KSRIGQEQLQFYRKMLVHLGEDDKKL---- 85 ++ +GY + ++ K+ + V + Sbjct: 68 SVITDDIKDDAIKTKGYFIYPSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPSEA 127 Query: 86 -VQAVFHNVSTTIT--------EPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQ 136 ++ +F + TT + ++ A++ ++ L + + D FGD YE L+ Sbjct: 128 DIKGLFADFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQ-IDLFGDAYEFLIS 186 Query: 137 KNANETKSGAGQYFTPRPLIKTIIHLLKPQPREV--VQDPAAGTAGFLIEADRYVKSQTN 194 A G++FTP+ + K I L V + DPAAG+ L++A + Sbjct: 187 NYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTHVNKIYDPAAGSGSLLLQAKKQFDDHI- 245 Query: 195 DLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDG 254 I F G E+ T LA MN LH+I + I+LGNTL Sbjct: 246 -------------IEEGFFGQEINHTTYNLARMNMFLHNINYDKF---DIKLGNTLTEPH 289 Query: 255 ENLPK-AHIVATNPPFGSAAGTNITRTFV-----------HPTSNKQLCFMQHIIETLHP 302 K + +NPP+ + T + P S F+ H + L Sbjct: 290 FRDEKPFDAIVSNPPYSVKWIGSDDPTLINDERFAPAGVLAPKSKADFAFVLHALNYLSA 349 Query: 303 GGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTV 362 GRAA+V + + GG IR+ L+D ++ T++ L +F+ + N+L +K Sbjct: 350 KGRAAIVCFPGIFYRGGAEQKIRQYLVDNNYVETVISLAPNLFFGTTIAVNILVLSKHKT 409 Query: 363 ANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSF 422 V D TD H++ +V+ Sbjct: 410 ---------DTKVQFIDASELFKKETNNNILTDAHIEQIMQVFASKED------------ 448 Query: 423 NAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDS-LDISWLKDKDSIDADSLPE 481 A + E D +L+ S + + + +DI+ L + + + Sbjct: 449 VAHLAKSVAFETVVANDYNLSVSSY-------VEAKDTREIIDIAELNAELKTTVSKIDQ 501 Query: 482 PDVLAAEAMGELVQA 496 + E+ Sbjct: 502 LRKDIDAIVAEIEGC 516 >UniRef50_C6MCS3 N-6 DNA methylase n=2 Tax=Proteobacteria RepID=C6MCS3_9PROT Length = 772 Score = 273 bits (697), Expect = 1e-71, Method: Composition-based stats. Identities = 93/496 (18%), Positives = 172/496 (34%), Gaps = 88/496 (17%) Query: 1 MNNNDL---VAKLWKLCDNLR-DGGVSYQNYVNELASLLFLKMCKETGQEAE-------- 48 MN L A LW D LR + + Y + L+FLK + E Sbjct: 1 MNKVQLKKLEADLWSAADTLRANSDLKSSEYATPVLGLIFLKFADNNYRRHEKAILSEYQ 60 Query: 49 ---------------------YLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQ 87 YLP+ R+D L + ++ + K + E+ K ++ Sbjct: 61 QLQGTRREKPVSEIAIEQCGFYLPDHTRYDYLLNLPEEKDIAKALKEAMKAIEEYKPELE 120 Query: 88 AVFHN---VSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKS 144 V + T T+ L+ + + D FG +YE L + A Sbjct: 121 GVLPKDEYAALTRTDKTIPQQLLRTFADI-----PANATGDLFGQIYEYFLSEFARSEGQ 175 Query: 145 GAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQ 204 G++FTPR +++ ++ +++P V DPA G+ G +++ +++ + N+L D Sbjct: 176 KGGEFFTPRSVVRLMVEIIEPHGG-KVFDPACGSGGMFVQSAQFIAAHRNELKGADSG-- 232 Query: 205 DFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVA 264 G E T +LA MN ++ + G + ++ + V Sbjct: 233 -----VYVCGQEKTQDTVKLAKMNLAVNGLRGEIKQANT-----YYEDPYDSFEQFDYVL 282 Query: 265 TNPPFG----------------------SAAGTNITRTFVHPTSNKQLCFMQHIIETLHP 302 NPPF + + N ++ +L P Sbjct: 283 ANPPFNVDDVSLSSVEKDRRFNTYGIPRNKSKVKKADEGKETVPNGNYLWISLFATSLKP 342 Query: 303 GGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTV 362 GRAA+V+ ++ DIR+ L+++ ++ +L LP+ +FY + + FF K Sbjct: 343 QGRAALVMANSASDARHSEADIRKTLIEQNLIYAMLTLPSNMFYTVTLPATLWFFDKAKR 402 Query: 363 ANPNQDKNCTDDVWVYDLRTNMPSFGK-RTPFTDEHLQPFERVYGEDPHGLSP--RTEGE 419 D + D R + F+ EH+Q + R Sbjct: 403 G---------DRILFIDARNIFTQIDRAHREFSAEHIQNIALISHLHKGQREKFIRLIDR 453 Query: 420 WSFNAEETEVADSEEN 435 + E + ++E+ Sbjct: 454 YFAAGMERLIENNEKI 469 >UniRef50_C7NHN8 Type I restriction-modification system methyltransferase subunit n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NHN8_KYTSD Length = 663 Score = 270 bits (691), Expect = 7e-71, Method: Composition-based stats. Identities = 96/501 (19%), Positives = 177/501 (35%), Gaps = 86/501 (17%) Query: 8 AKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK-----------ETGQEAEYLPEGYRW 56 +W + D LR G + Y + L + ++ E P+ R Sbjct: 19 NFIWGIADMLR-GPYRPKEYGTVILPFTVLARFESVLEPTKDAVLAASEKYESAPDLVRH 77 Query: 57 DDLKSRIGQEQLQF-----------------YRKMLVHLGEDDKKLVQAV-FHNVSTTIT 98 + LK GQE + ++ E+ +++ + + + Sbjct: 78 EMLKRASGQEFYNISQFTLSTLGDPANQAANLQNLIEGYNEEVRQVFERFDMPKIIRDLD 137 Query: 99 EPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKT 158 + +++A+V +LD + S + GD++E L+++ +K AG YFTPR +++ Sbjct: 138 DRDRLSAVVKEFAALDVH--PDRVSNAEMGDVFEELIRRFMEASKDVAGDYFTPREVVRL 195 Query: 159 IIHLL---------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIH 209 ++ LL P V DP GT G L EA +++ Sbjct: 196 MVSLLFSPDTEDLSDPHLIRQVYDPTCGTGGMLSEAHEWMREHNGHAT------------ 243 Query: 210 RAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPF 269 G E + +A + ++ + I G+TL DG +NPPF Sbjct: 244 LNLFGQEFNALSYAMAKADLIIKKQDAQ-----NIFFGDTLLVDGHEGKTFSYCISNPPF 298 Query: 270 GSAA---------------GTNITRTFVHPTSNKQLCFMQHIIETLHP----GGRAAVVV 310 G + ++ + F+QH++ + P GGR A+V+ Sbjct: 299 GQDWKVQEKAVKAERERDGDEGRFAAGLPSVNDGAMLFLQHLVSKMRPAAQGGGRGAIVL 358 Query: 311 PDNVLFEGGKGT---DIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQ 367 + LF G G +IRR L++ + I+ LPT +FY G+ T + Sbjct: 359 NGSALFTGSAGQGPSEIRRHLLENDLVDAIIGLPTDLFYNTGIATYIWVLDNNKPQERRG 418 Query: 368 DKNCTDDV--WVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAE 425 D WV +R ++ + KR ++ ++ +YGE P ++ Sbjct: 419 KVQLIDGTAQWV-KMRKSIGA--KRRMLSEANITSIVDLYGEYEDA-DPEVSKVFNTEDF 474 Query: 426 ETEVADSEENKNTDQHLATSR 446 E+ + R Sbjct: 475 GYRTITVEQPLRQVYSVDEDR 495 >UniRef50_A7IDE4 N-6 DNA methylase n=3 Tax=Proteobacteria RepID=A7IDE4_XANP2 Length = 710 Score = 270 bits (689), Expect = 1e-70, Method: Composition-based stats. Identities = 128/525 (24%), Positives = 207/525 (39%), Gaps = 103/525 (19%) Query: 31 LASLLFLKMCK--ETGQEAE----------YLPEGYRWDDLKSR----IGQEQLQFYR-- 72 L L+FLK E E E + YRW D S G + L F Sbjct: 46 LTWLMFLKFVDDMERVHEDEAVLAGETYRSLIDPPYRWRDWASDSAGITGPDLLSFINGE 105 Query: 73 --------------KMLVHL-----GEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSL 113 L L G + +V AVF ++ T + +++ ++ + Sbjct: 106 QTVRADGTKGPGLFTYLRSLRGNGEGRQRRDVVSAVFRDLRNYATSGYVLRDVINLVNDI 165 Query: 114 DWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQD 173 + + + G MYE LL++ + G+++TPRP+++ ++ ++ P+ E V D Sbjct: 166 HFDST---EDIQTLGRMYETLLREMRDAAGQN-GEFYTPRPVVRFMVQVIDPKLSETVLD 221 Query: 174 PAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD 233 PA GT GFL A ++K + + + ++ G E LA MN LLH Sbjct: 222 PACGTGGFLAAAFDHMKPSADTV-----EKREILQRSTLRGGEDSSLPFLLAQMNLLLHG 276 Query: 234 IEG-NLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFV--HPTSNKQL 290 +E +++ G A+R T + + + ++ TNPPFG I F T+ L Sbjct: 277 LEAPDIEFGNALRFKLTEIGERDRVE---VILTNPPFGGEEEAGILTNFPDDRRTAETAL 333 Query: 291 CFMQHIIETLHPG--GRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYA- 347 F+Q I+ L G GRA VVVP+ +LF G I+ DL+++ +LHTI+RLP G F Sbjct: 334 LFLQLIMRRLKRGGHGRAGVVVPNGILFGDGIAARIKADLLEQFNLHTIVRLPEGTFAPY 393 Query: 348 QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYD--LRTNMPSFGKRTPFTDEHLQPFERVY 405 + TN++FF T D+W ++ L + K P E L + Sbjct: 394 TDIPTNIIFFD---------TSGPTGDIWYWEQPLPGGRRKYSKTQPLLYEELTDCLEWW 444 Query: 406 GEDPHGLSPRTEGEWSFNAE-ETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLD 464 S R EG ++ + + E + L Sbjct: 445 -------SARKEGPQAWKVFGPSLIKRDTEGRTIAVDLD--------------------- 476 Query: 465 ISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALMRELGA 509 LK+ + +A+ E + V EL A++ EL A Sbjct: 477 ---LKNPHAKEANHRR-----PVEIIESAVAKQRELLAVLDELRA 513 >UniRef50_A1BH53 N-6 DNA methylase n=4 Tax=Bacteria RepID=A1BH53_CHLPD Length = 662 Score = 269 bits (688), Expect = 1e-70, Method: Composition-based stats. Identities = 94/504 (18%), Positives = 161/504 (31%), Gaps = 101/504 (20%) Query: 6 LVAKLWKLCDNLR-DGGVSYQNYVNELASLLFLKMCK---------------------ET 43 L +LW D LR + G+ Q Y + L+FL Sbjct: 16 LEKRLWDAADQLRANSGLKAQEYSAPVLGLIFLLFADVRFAARRAELESAKSSTRRGSRV 75 Query: 44 GQEAEYLPEG-------YRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTT 96 A Y EG R+ L +R E + + E + V Sbjct: 76 DDPAAYHAEGVLYLSPEARFVYLLNRPEAENIGVMVNEAMRAIEKHNPQLAGVLPKTYYL 135 Query: 97 ITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLI 156 P + L+ + + D FG +YE L + A G G+++TP ++ Sbjct: 136 FDSP-LLKQLLKKVSEI-----PSSMDYDAFGRIYEYFLGEFAMSEGQGGGEFYTPVSIV 189 Query: 157 KTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLE 216 + + +++P + DPA G+ G + + R+V Q+ + G+E Sbjct: 190 RLLTEVIEPYHG-RILDPACGSGGMFVSSARFVAQH----------KQNPSAELSIHGIE 238 Query: 217 LVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENL-PKAHIVATNPPFGS---- 271 T RL +N +H +EG + HGG + N+ D + V NPPF Sbjct: 239 KTDETGRLCRLNLAVHGLEGRIMHGGNV---NSYYDDPHDATGNFDFVLANPPFNVNAVD 295 Query: 272 ----AAGTNITRTFV---HPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDI 324 R F T N ++Q L+ GRA V+ ++ +I Sbjct: 296 KERLKDSVGPGRRFPFGLPRTDNANYLWIQLFYSALNERGRAGFVMANSASDARSSEQEI 355 Query: 325 RRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVA--------------------- 363 RR L++ + ++ + +FY + + FF K Sbjct: 356 RRQLIESRTVDVMVAVGPNMFYTVTLPCTLWFFDKAKARLSPPSSPALLPKVEGGEEDLP 415 Query: 364 ----------NPNQDKNCTDDVWVYDLRTNMPSFGK-RTPFTDEHL---QPFERVYGEDP 409 N D V D R + +T + R++ + Sbjct: 416 LSRRILTERDGEGNVPNRADTVLFIDARHIYRQVDRAHRDWTPAQIGFMANLVRLWRGEA 475 Query: 410 -----HGLSPRTEGEWSFNAEETE 428 G R + E F A+ ++ Sbjct: 476 LDYTLGGDEAREKIEEVFAAKSSD 499 >UniRef50_B4S214 Type I restriction-modification system methyltransferase subunit n=1 Tax=Alteromonas macleodii 'Deep ecotype' RepID=B4S214_ALTMD Length = 703 Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats. Identities = 116/508 (22%), Positives = 203/508 (39%), Gaps = 90/508 (17%) Query: 2 NNNDLVAKLWKLCDNLRDG-GVSYQ-NYVNELASLLFLKMCKETGQ--EAEYLPEG---- 53 L A + +R G++ + + L ++FLK + Q E E + EG Sbjct: 3 TAQQLGAIVKSSRQIMRKDKGLNGDLDRLPMLTWIMFLKFLDDLEQMRETEAVLEGKSFQ 62 Query: 54 ------YRWDDLKSR----IGQEQLQFYRK--------------------MLVHLGEDDK 83 YRW D + G E + F + G D + Sbjct: 63 PAIEAPYRWRDWAAIEGGITGDELIAFINNDEAMRPDGTRGIGLFAYLRSLQGDNGGDRR 122 Query: 84 KLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETK 143 ++ VF + + + +V ++ + + + + +YE +L++ + Sbjct: 123 DVIATVFKGMQNRMINGYLLRDVVDKINGIHFNSS---EEMHTLSRLYETMLREMRDAAG 179 Query: 144 SGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDT 203 +G+++TPRP+++ ++ ++ PQ E V DPA GT GFL+EA +++ Q ++D Sbjct: 180 -DSGEFYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVED----- 233 Query: 204 QDFQIHRAFIGLELVPGTRRLALMNCLLHDIE-GNLDHGGAIRLGNTLGSDGENLPKAHI 262 ++ + G E L MN LLH +E +D ++R D + + + Sbjct: 234 REVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPLREMGDKD---RVDV 290 Query: 263 VATNPPFGSAAGTNITRTFVHPTSNKQL--CFMQHIIETLH-------PGGRAAVVVPDN 313 + +NPPFG I F + F+Q I+ L GGRAAVVVP++ Sbjct: 291 ILSNPPFGGEEEKGILGNFPEDMQTAETVQLFLQLIMRKLKRKGNGSVTGGRAAVVVPES 350 Query: 314 VLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQG-VKTNVLFFTKGTVANPNQDKNCT 372 VL++GG +R+ L+ +LHTI+RLP G+F +++N+LFF + T Sbjct: 351 VLYDGGVAQRVRKQLLSDFNLHTIIRLPKGVFEPYSDIQSNILFFDRN---------GPT 401 Query: 373 DDVWVYDLRTNMPSFGKRTP-------FTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAE 425 VW Y + G + P +E + Y E +E Sbjct: 402 KGVWFYQHEVPVERRGMKNPCYTVTNALKEEEMAEIRTWY-------------ESPCESE 448 Query: 426 ETEVADSEENKNTDQHLATSRWRKFSRE 453 SE+ ++ D RK +E Sbjct: 449 YAWFVPSEDIRSKDFSFDFRNPRKEQQE 476 >UniRef50_Q5NWK9 Type I restriction-modification system (Specificity subunit) n=3 Tax=Betaproteobacteria RepID=Q5NWK9_AZOSE Length = 540 Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats. Identities = 116/484 (23%), Positives = 192/484 (39%), Gaps = 68/484 (14%) Query: 52 EGYRWDDLK-SRIGQEQLQFYRKMLVHLGEDDKKLVQ-AVFHNVSTTITEPKQITALVSN 109 + +RW + G+ ++F R + + H I EP + +V+ Sbjct: 87 DRFRWSVWATALSGEPLVRFLRDEVFAFFTEMAGNGAVNFMHGARLVIDEPTVLNQVVTL 146 Query: 110 MDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPRE 169 +D L D GD++E +L++ GQ+ TPR +I+ I+ ++ P+ E Sbjct: 147 VDGLHL----DRADADTKGDLFEHVLRQIKQA--GELGQFRTPRHIIRAIVEIIDPKIGE 200 Query: 170 VVQDPAAGTAGFLIEADRYVKSQTNDL------------------DDLDGDTQDFQIHRA 211 + DPAAGTAGFL+ A +++ + D L + Sbjct: 201 TIYDPAAGTAGFLVAAYNHIRLANSSPAGIQSVELDGKMQTRGLGDKLSTAQLSALQSKT 260 Query: 212 FIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAH---------I 262 F G ++ P RLA MN L + I L N L + +N KA + Sbjct: 261 FFGNDVDPKMVRLATMNLTLRGLP-----NVHILLRNVLTTTLDNERKADLCLPQEGYHV 315 Query: 263 VATNPPFGSAAGTN--ITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEG-G 319 V NPPF + + + T+ +L F+++++++L PGGR V+VP+ VLF G Sbjct: 316 VLANPPFSGRVDKDRIVDDVKIGTTTATELLFLKYMMDSLRPGGRCGVIVPEGVLFGSTG 375 Query: 320 KGTDIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVY 378 ++RR L++ + ++ LP G+F GVKT+VLFF KG T++V Sbjct: 376 AHKELRRQLIENNRVEAVMSLPGGVFQPYSGVKTSVLFFRKG---------GRTENVLFL 426 Query: 379 DLRTNMPSFGKR--TPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFN-AEETEVADSEEN 435 + + TP + L Y + E + AD+ Sbjct: 427 HVDNDGYKLDANHDTPIEADDLPGLVAAYRDREANREAWASREPQAEWSAPWWFADAAAL 486 Query: 436 KNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQ 495 + D +L+ R+R S+ + L D L +V AE + L Sbjct: 487 RANDFNLSAGRYRPMSQSQVEHRDPRKL------------LDELAAIEVEIAEEVEALRA 534 Query: 496 ALSE 499 AL E Sbjct: 535 ALGE 538 >UniRef50_Q7NAH5 HsdM n=1 Tax=Mycoplasma gallisepticum RepID=Q7NAH5_MYCGA Length = 884 Score = 269 bits (687), Expect = 2e-70, Method: Composition-based stats. Identities = 85/508 (16%), Positives = 168/508 (33%), Gaps = 92/508 (18%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYR----- 55 M +L ++W + + +R G + +Y + + LF K + E + Sbjct: 10 MTKQELAREIWAMANEMR-GNIEANDYKDYILGFLFYKYLSDKQDEYFASKNVVKDEDKK 68 Query: 56 -------------------------------------W-------DDLKSRIGQEQLQFY 71 W DDL ++ F Sbjct: 69 QYLVALAEADKKGIASIIHKCKKDLGYYIAYENLFSTWIKNYNPGDDLSDKVSTALNSFE 128 Query: 72 RKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNM-DSLDWYNGAHGKSRDDFGDM 130 R +L E K + + + + + + + N+ + ++ + D G + Sbjct: 129 RSILEKYEESFKDIFKDLQAGIQKLGNTAYERSEAIWNICNLINKIPITSKQDYDILGFV 188 Query: 131 YEGLLQKNANETKSGAGQYFTPRPLIKTI----IHLLKPQPREVVQDPAAGTAGFLIEAD 186 YE L+ A AG+++TP + + + + LK + DP +G+ LI Sbjct: 189 YEYLISMFAANAGKKAGEFYTPHEVSQLMSVIAANHLKGLKNVSIYDPTSGS--LLITLG 246 Query: 187 RYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEG---NLDHGGA 243 R +K D + + E++ T + MN L++D+ G Sbjct: 247 RELKK------------IDKNVKIQYYAQEVIDTTYNITRMNLLMNDVHSVNMFAKCGDT 294 Query: 244 IRLGNTL--GSDGENLPKAHIVATNPPFG------SAAGTNITRTFVHPTSNKQLCFMQH 295 ++ + V +NPP+ + R + P S +L F+ H Sbjct: 295 LKEDWPFVYEEQKYKSKRTDAVVSNPPYSLAWNTENKENDPRFRYGLAPKSKSELAFLLH 354 Query: 296 IIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVL 355 + L G +V+P VLF GG IR++L+ H+ I+ LP+ IF+ G+ T ++ Sbjct: 355 SLYHLEDHGILTIVLPHGVLFRGGSELQIRQNLISHDHIDAIIGLPSNIFFGTGIPTIIM 414 Query: 356 FFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPR 415 + K ++V D G + + + Sbjct: 415 VLKRSKT------KKEKNNVLFIDASKYFTKEGNKNKLQSSDIVRIYDAFSAREDIPG-- 466 Query: 416 TEGEWSFNAEETEVADSEENKNTDQHLA 443 ++ E+ +E N N +++ Sbjct: 467 ----FARVVSHEEIKANEYNLNIPKYID 490 >UniRef50_A3RQ90 Type I restriction-modification system methylation subunit n=4 Tax=Ralstonia solanacearum RepID=A3RQ90_RALSO Length = 481 Score = 268 bits (686), Expect = 3e-70, Method: Composition-based stats. Identities = 116/501 (23%), Positives = 191/501 (38%), Gaps = 76/501 (15%) Query: 1 MNNNDLVAKLWKLCDNLRDGGV-SYQNYVNELASLLFLKMCKETGQEA------------ 47 M DL ++ +L D G+ + +L LL LK + A Sbjct: 1 MMTADLQRQVDRLWDAFCAEGIADPIEIIEQLTCLLCLKRQDDRHALAIHLARRTGQPPG 60 Query: 48 -------EYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGE---DDKKLVQAVFHNVSTTI 97 + RW ++ Q++ + D + ++ T+ Sbjct: 61 SDTRPVFREDQDTLRWSVFRTLNPQDRFDAMSTHGIPFLRALGDTDPVCGRHLRDIRFTM 120 Query: 98 TEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIK 157 P + +V +D++ + RD G +Y+ LL + G++ TPR +++ Sbjct: 121 PTPALLAKVVQQLDAIPLHR------RDVRGAVYDALLGRIPLV--GQGGRFHTPRHIVR 172 Query: 158 TIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLEL 217 ++ L +P P + + DPAAGT FL A Y++ + L + F H F G E+ Sbjct: 173 FMVELTRPDPSDTLCDPAAGTGSFLAAAGEYLRREHPGLLHDARQSVHF-HHGMFHGYEI 231 Query: 218 VPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLG-SDGENLPKAHIVATNPPFGSAAGT- 275 R+ MN LLH +E G +R + L +D +V +PPF Sbjct: 232 DRAMLRIGSMNLLLHGVE-----GPDLRDHDALAPTDANEAGAYSLVLAHPPFTGDVDHG 286 Query: 276 --NITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGG-KGTDIRRDLMDKC 332 + T +L F+ + L PGGRAAV+VPD VLF G +RR L++ Sbjct: 287 SVDPDLLHRVRTRKAELLFLARCLHLLKPGGRAAVIVPDGVLFGSGLAHRTLRRMLVENH 346 Query: 333 HLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSF-GKR 390 L +++LP G+F G+ T +L FT+ D T VW YDLR + S Sbjct: 347 RLEGVIKLPAGVFRPYAGIGTAILLFTR-------TDTGGTGHVWFYDLRADGFSLDDPH 399 Query: 391 TPFTDE-------------------HLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVAD 431 TP E +L +G+ G SF + ++A Sbjct: 400 TPLLPEDQLGATPAAPLAPHDHARNNLPDALHRWGQREAGERGNPRSAQSFCVPKPDIAA 459 Query: 432 SEENKNTDQHLATSRWRKFSR 452 L +R+++ +R Sbjct: 460 Q------GYDLTLNRYQERAR 474 >UniRef50_Q3M7D1 N-6 DNA methylase n=5 Tax=Bacteria RepID=Q3M7D1_ANAVT Length = 694 Score = 268 bits (685), Expect = 4e-70, Method: Composition-based stats. Identities = 93/456 (20%), Positives = 168/456 (36%), Gaps = 84/456 (18%) Query: 4 NDLVAKLWKLCDNLR-DGGVSYQNYVNELASLLFLKMCK--------ETGQEAE------ 48 L A LW+ D LR + + Y + L+FLK E QE E Sbjct: 7 KQLEANLWQSADTLRANSDLKSSEYSTPVMGLIFLKFADNKYRQYAAEIQQEYEALKGTR 66 Query: 49 ---------------YLPEGYRWDDLKSRIGQEQL-QFYRKMLVHLGEDDKKLVQAVFHN 92 YLP+ R++ L + +E + + + +V + +L + + Sbjct: 67 REKAIAEIAIEKCGFYLPDHARYNYLLNLPEEEDIAKAIKAAMVSIESYKPELKDTLPQD 126 Query: 93 VSTTITEPKQ--ITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYF 150 +T + L+ N ++ + D FG +YE L A G G++F Sbjct: 127 EYFRLTRTDKGIPKQLLKNFSNI-----PENATGDMFGQIYEYFLGNFALSEGQGGGEFF 181 Query: 151 TPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHR 210 TPR +++ ++ +++P V DPA G+ G +++ ++++ Q L+ D Sbjct: 182 TPRSVVRLMVEIIEPHQG-TVFDPACGSGGMFVQSAQFIEEQRKKLNQSAADDLF----- 235 Query: 211 AFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGE-NLPKAHIVATNPPF 269 G E T +LA MN ++ + G+ +R NT D + K V NPPF Sbjct: 236 -VYGQEKTLETVKLAKMNIAVNGLRGD------VRQTNTYYEDPFGSFGKFDYVLANPPF 288 Query: 270 G----------------------SAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAA 307 + N ++ +L P GRAA Sbjct: 289 NVDDVNLSRVEIDARFNTYGIPRNKTKGKKQEQGNETVPNANYLWINLFATSLKPKGRAA 348 Query: 308 VVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQ 367 +V+ ++ DIR+ L+++ ++ +L LP+ +FY + + FF +G Sbjct: 349 LVMANSASDARHSEADIRQKLIEENLIYGMLTLPSNMFYTVTLPATLWFFDRGKT----- 403 Query: 368 DKNCTDDVWVYDLRTNMPSFGK-RTPFTDEHLQPFE 402 D + D R + F+ E + Sbjct: 404 ----DDKILFIDARNIFTQVDRSHREFSTEQISNIA 435 >UniRef50_B3EKI4 N-6 DNA methylase n=1 Tax=Chlorobium phaeobacteroides BS1 RepID=B3EKI4_CHLPB Length = 775 Score = 268 bits (685), Expect = 4e-70, Method: Composition-based stats. Identities = 101/450 (22%), Positives = 201/450 (44%), Gaps = 52/450 (11%) Query: 23 SYQNYVNELASLLFLKMCKETGQ---EAEYLP-------EGYRWDDLKSRI--GQEQLQF 70 + + ++++ + L K + Q +A P E Y W L + QE++ Sbjct: 22 NPTSQIDQITNALIYKFMDDMDQAAIKAGGSPSFFVDDLENYAWTRLMDQRIGNQERMNL 81 Query: 71 YRKMLVHLGEDD--KKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFG 128 Y + L+ + +L + +F + P+ + + +D D+ ++ G Sbjct: 82 YSEALIKFSQAKQLPELFRGIFKSAFLPYRSPETLGLFLKEIDYFDY------SHPEELG 135 Query: 129 DMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRY 188 + YE LL +++ AGQ+ TPR +I I+ ++ P + V DPA GT GFL+ + ++ Sbjct: 136 NAYEYLLSIMSSQ--GDAGQFRTPRHIIDFIVDVVNPTKADKVLDPACGTGGFLVSSYKH 193 Query: 189 VKSQTNDLDDLDGD------TQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGG 242 + Q + DD + ++ F G ++ P R+A +N LH + Sbjct: 194 ILEQHDGKDDPKKKEKPLTPDERKKLMTNFEGYDIDPTMVRIAQVNMYLHQFK-----NP 248 Query: 243 AIRLGNTLGSDGENLPKAHIVATNPPF-GSAAGTNITRTFVHPTSNKQLCFMQHIIETLH 301 I ++L S+ K ++ NPPF G F P+S ++ F+ +I+ L Sbjct: 249 KIFQYDSLSSEERWNDKFDVILANPPFMSPKGGIKPHSKFSIPSSRSEVLFVDYIMNHLR 308 Query: 302 PGGRAAVVVPDNVLFEGG-KGTDIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTK 359 P GRA ++VP+ ++F+ G +R++L++ L+ ++ LP+G+F GVKT++L F Sbjct: 309 PKGRAGIIVPEGIIFQSGTAHKQLRKNLVEDG-LYAVVSLPSGVFAPYSGVKTSILLFN- 366 Query: 360 GTVANPNQDKNCTDDVWVYDLRTNMPSFG-KRTPFTDEHLQPFERVYGEDPHGLSPRTEG 418 N+ + ++ + + G + P + L + + G + E Sbjct: 367 ------NELAKTSTEILFVKIEQDGFDLGATKRPISKNDLPTALDILNKWNTG--EKVEN 418 Query: 419 EWSFNAEETEVADSEENKNTDQHLATSRWR 448 + + E++++A+ N D +L+ R+R Sbjct: 419 KLAVYVEKSKIAE-----NGDYNLSGDRYR 443 >UniRef50_B2VGL9 Type I restriction-modification system, M subunit n=1 Tax=Erwinia tasmaniensis RepID=B2VGL9_ERWT9 Length = 494 Score = 268 bits (684), Expect = 5e-70, Method: Composition-based stats. Identities = 96/487 (19%), Positives = 178/487 (36%), Gaps = 73/487 (14%) Query: 15 DNLRDGGVSYQNYVNELASLLFLKMCKET----------------GQEAEYLPEGYRWDD 58 + R G + ++ + SL+FLK + + +P+G + Sbjct: 19 NIFR-GRLDAIQCLDYIISLIFLKYISDLICDINEDRVSDNDLRLKELLSNVPKGMSFYS 77 Query: 59 LKSRIGQEQL-QFYRKMLVHLGEDDKKLV----QAVFHNVSTTI-------TEPKQITAL 106 + S I + + L E + + +F ++ T ++ L Sbjct: 78 ISSEINHGGIGERINTALSCYDEAIFQSLYKCDSRIFSDIDFTSDRLGPARGRDAFLSEL 137 Query: 107 VSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQ 166 + +S ++ + D + L +K A+E G ++TP + + L+ P+ Sbjct: 138 MHIFNSREFQFNYYNDGADRISLICSILFEKTASEAGLRGGDFYTPHGVSALLSELVSPR 197 Query: 167 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLAL 226 + + DPA GT L+ A + + + G E++ + +A Sbjct: 198 AGDSIYDPACGTGSLLLSAVHKI------------PYIEKCQNHNVYGQEIIKVSWNIAY 245 Query: 227 MNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTN---ITRTF-- 281 +N LH + G + + L K +V +NPPF + N ++ F Sbjct: 246 INMFLHGVYSCKIKWGDVFQNPQFKNSKSELAKFDVVLSNPPFSMSNWGNKEALSDRFGR 305 Query: 282 ----VHPTSNKQLCFMQHIIETLHPG-GRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHT 336 V P S F+ H+I +L GR AVVVP VLF G IR +L+ + L Sbjct: 306 FAMGVPPQSKADYAFILHMIASLKDDTGRMAVVVPHGVLFRGANEALIRMNLIKENLLDA 365 Query: 337 ILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDE 396 ++ LP +F + + T +L F K + + +V D + R T E Sbjct: 366 VIGLPERLFLSTNISTAILIFRKNKMDS---------NVLFIDSTILFENSKGRNYITGE 416 Query: 397 HLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIR 456 H++ + + E + VA E ++ D ++ +R+ K E I+ Sbjct: 417 HIKRILKAFHERQD------------VCNISHVACLSEIEHNDYNINITRYVK-RVEEIQ 463 Query: 457 TAKSDSL 463 SL Sbjct: 464 DIDLYSL 470 >UniRef50_C6WNK0 N-6 DNA methylase n=5 Tax=Actinomycetales RepID=C6WNK0_ACTMD Length = 670 Score = 268 bits (684), Expect = 5e-70, Method: Composition-based stats. Identities = 97/530 (18%), Positives = 172/530 (32%), Gaps = 106/530 (20%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK--------------ETGQEA 47 + +L W + D LR G +Y + L+ + E + Sbjct: 5 KHTELANHAWSVADLLR-GDYKQSDYGKVILPFTVLRRLECVLTPTKDKVLETAERFADR 63 Query: 48 EYLPEGYRWD------------DLKSRIGQEQL--QFYRKMLVHLGEDDKKLVQAV-FHN 92 E P+ + LK+ G ++ + L + +++++ F Sbjct: 64 EMDPDRFLRKASGHSFYNTSTYTLKAIAGDATHAAKYLNEYLGAFSPNAREVLERYEFAQ 123 Query: 93 VSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTP 152 + + ++ LD + G ++E L+++ A ++ AG++FTP Sbjct: 124 QVKKLDAADLLYQVLGRFADLDLR--PEVVTNHQMGYIFEELIRRFAEQSNETAGEHFTP 181 Query: 153 RPLIKTIIHLL---------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDT 203 R +I ++ LL P V DPA GT G L A+ + D Sbjct: 182 REVIDLMVKLLIAPDSDVLSVPGAVRTVLDPACGTGGMLSAAEEEITKHNKDAT------ 235 Query: 204 QDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIV 263 G EL P + + + ++ + I+ GN+ D V Sbjct: 236 ------VKVFGQELNPESWAICRSDMMIKGQDPE-----NIKFGNSFSDDSHAHATFDYV 284 Query: 264 ATNPPFGSAAGT---------------NITRTFVHPTSNKQLCFMQHIIETLHP------ 302 NPPFG + ++ L F+QH+I + P Sbjct: 285 LANPPFGVDWKKVQETVEREHKMLGESGRFGAGLPRINDGSLLFLQHMISKMKPVDVDGK 344 Query: 303 -GGRAAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFT 358 G R A+V + LF G + IRR +++ L I+ LP +FY G+ T + Sbjct: 345 GGSRVAIVFNGSPLFTGAADSGESKIRRWILENDWLEGIVALPDQLFYNTGIFTYFWIVS 404 Query: 359 KGTVANPNQDKNCTDDVWVYDLR----TNMPSFG-KRTPFTDEHLQPFERVYGEDPHGLS 413 + K V + D R S G KR ++ + R+Y E L Sbjct: 405 N------RKSKGRQGKVVLLDARDYWQKMRKSLGDKRKMINEQQISEITRLYTEALAILD 458 Query: 414 PRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSL 463 + + +N + + R F I + L Sbjct: 459 AEKNDQM------------HDLRNKGRKIKLFRNEDFGYRRITVERPLKL 496 >UniRef50_B9XME0 N-6 DNA methylase n=1 Tax=bacterium Ellin514 RepID=B9XME0_9BACT Length = 811 Score = 267 bits (683), Expect = 7e-70, Method: Composition-based stats. Identities = 116/519 (22%), Positives = 206/519 (39%), Gaps = 47/519 (9%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAE--------YLPE 52 M ++D ++ + L ++ V ++ L K + E+E + + Sbjct: 1 MLDSDTKRRIDTARNILVGKVPDPKSQVEQITIALIYKFMDDMDAESEELGGKRKFFTKD 60 Query: 53 --GYRWDDLK--SRIGQEQLQFYRKMLVHLGEDD--KKLVQAVFHNVSTTITEPKQITAL 106 Y W L G E L Y + + + ++ L + +F N +P+ + A Sbjct: 61 FARYGWARLMRSGLGGHELLGLYGEGIAKMPQNPGIPLLFREIFKNAYLPYRDPETLKAF 120 Query: 107 VSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQ 166 + +D + + GD +E LL ++ AGQ+ TPR +I I+ ++ P+ Sbjct: 121 LKIIDEFTYDHSER------LGDAFEYLLSVLGSQ--GDAGQFRTPRHIIDFIVSVVDPK 172 Query: 167 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDF--QIHRAFIGLELVPGTRRL 224 E V DPA GTAGFLI + +++ D T D ++ + F G ++ P RL Sbjct: 173 KNETVLDPACGTAGFLISSYKHILRANTDARGNSKLTPDDRGRLAKNFKGYDISPDMVRL 232 Query: 225 ALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPF-GSAAGTNITRTFVH 283 +L+N LH I +TL S+ A ++ NPPF G + F Sbjct: 233 SLVNLYLHGF-----TDPHIYEYDTLTSEERWNEFADVILANPPFMSPKGGIKPHKRFSV 287 Query: 284 PTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTG 343 P++ ++ F+ +++E L GRA ++VP+ ++F+ G R+++ K L I+ LP+G Sbjct: 288 PSNRSEVLFVDYMLEHLTAHGRAGIIVPEGIIFQSGTAYRRLREVLLKESLIGIISLPSG 347 Query: 344 IFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFE 402 +F GVKT++L K + V D+R S G + T+ + PF Sbjct: 348 VFQPYSGVKTSILILDKRVAKSRP-------HVLFSDIRAIGVSLGVKRTVTERNDLPFV 400 Query: 403 RVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDS 462 E + + + + + D + R+R T Sbjct: 401 --------VQDYAAYHEGTELSRHSFLVERNAIAANDYIFSAERYRPVE-ARAGTRVVRL 451 Query: 463 LDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELD 501 D+ L + P L A L + E+D Sbjct: 452 KDVCSLTKGTHSSTKTQRGPYPLIVTAKEPLSSSDYEID 490 >UniRef50_A8ZYK3 N-6 DNA methylase n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZYK3_DESOH Length = 680 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 109/628 (17%), Positives = 203/628 (32%), Gaps = 146/628 (23%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETG---------------- 44 + L + L+ + D LRD ++Y + + SLLF K + Sbjct: 2 ITKQALGSTLFGMADILRD---KVEDYKSYILSLLFFKRLSDNYTWESENGIKEFVKDNK 58 Query: 45 --------------QEAEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAV- 89 + +P+G W D+++ ++ K + + + + L + Sbjct: 59 REPNDREKEIILRRKHDFTIPDGCFWGDVRNAPLDKKNDALNKAVNAIADSNTSLKGVIN 118 Query: 90 --------FHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANE 141 P+ ++ L++ +D++D N S D GD YE L+++ A+E Sbjct: 119 TVRWNEPSPDGSGGKKLHPEVLSPLINYLDAVDLSN--RNASVDILGDAYEYLIKRFADE 176 Query: 142 T--KSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDL 199 + AGQ++TP+ ++ I+ LKPQ + DP G+ GFLI A +Y+K T ++ Sbjct: 177 NRNGTTAGQFYTPQEVVDIIVRYLKPQKGSTLYDPTCGSGGFLINAAKYIKKTTGTQKNI 236 Query: 200 DGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGE-NLP 258 G E V T +A +N +LH ++ + G ++ D + + Sbjct: 237 -----------RLFGQEDVWNTWAIANINMILHGLDAAIKKGDTLKDPKFTEEDNDLTIK 285 Query: 259 KAHIVATNPPFGSAAG-----------------------------------TNITRTFVH 283 +V N PF + Sbjct: 286 TFDLVMANFPFSQENWWKNGEPKRDKKGKPITNKDGSPQLNYPGKEDFNDPYERFDYGIP 345 Query: 284 PTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEG---------------GKGTDIRRDL 328 P SN F+QHI+ +++ G+A VV P VLF G IRR Sbjct: 346 PFSNGDFAFLQHIVASMNESGKAGVVCPQGVLFRGQPQKTEEEDGQNRKADDEYLIRRGF 405 Query: 329 MDK------------CHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQD---KNCTD 373 + + I+ LP +FY + ++L F K Sbjct: 406 LQGPVNKDGEFVHAINIIDAIVVLPGNLFYGTTIPGSILLFNKNKPEERKNKVLMVYAAK 465 Query: 374 DVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSE 433 + W + + + + + + + + Sbjct: 466 EGWYKEESNM-------NTLLPQDILRISTILESWGDMEIAKAWITSQKSRLRDLIQEEL 518 Query: 434 ENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGEL 493 + K + L ++E I AK L E + L Sbjct: 519 DFKKGEIDLD-------TQEDIELAKDKHQKAGELVKAKEA------EGKKPTQAQLNNL 565 Query: 494 VQALSELDALMRELG---ASDEADLQRQ 518 +A L+ L+++ A E +++ Sbjct: 566 QKAKETLEKLIKQKEQRIADAEGQAEKE 593 >UniRef50_Q65QI8 HsdM protein n=8 Tax=Proteobacteria RepID=Q65QI8_MANSM Length = 732 Score = 266 bits (680), Expect = 1e-69, Method: Composition-based stats. Identities = 96/503 (19%), Positives = 167/503 (33%), Gaps = 95/503 (18%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKM---------------CKETGQE 46 + + + +W + + LR G Y + L+ L E Sbjct: 9 KQSTISSVIWSMANMLR-GTYRPPQYRRVMLPLIVLARFDAILAPYTDAMKAKADELQAM 67 Query: 47 AEYLPEGYRWDDLKSRIGQEQLQF-----------------------YRKMLVHLGEDDK 83 PEG ++ ++ + K L K Sbjct: 68 GGKAPEGALYEMALTKAADPNRKQPLYNTSGYNLQRLLADQDHIAANLVKYLQGFSAKAK 127 Query: 84 KLVQAV-FHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDD----FGDMYEGLLQKN 138 + F N + ++ A+VS NG + G ++E L++K Sbjct: 128 DIFDKFEFENEIEKLDSSNRLYAVVSQFQKDLKENGIDLSPQSISNLQMGYIFEELVRKF 187 Query: 139 ANETKSGAGQYFTPRPLIKTIIHLL---------KPQPREVVQDPAAGTAGFLIEADRYV 189 + AG +FTPR +I +++L+ +P + DP AGT G L E+++++ Sbjct: 188 NEQANEEAGDHFTPREVINLMVNLIFEEDQQRLSQPHAIASIYDPTAGTGGMLSESEKHL 247 Query: 190 KSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE-GNLDHGGAIRLGN 248 KS + I G E + + + L+ D NL G + + N Sbjct: 248 KSYNDS------------IKLQLFGQEYNAESYAICCADLLIKDEPISNLVFGDTLGVKN 295 Query: 249 TLGS-------DGENLPKAHIVATNPPFGSAAGTN--------------ITRTFVHPTSN 287 + + DG K + +NPPFG + ++ Sbjct: 296 SKNTGTGFVPHDGHQTKKFDYMFSNPPFGVEWKNEQDFINDEAKSGFAGRFGAGLPRIND 355 Query: 288 KQLCFMQHIIETLHP----GGRAAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRL 340 L F+QH+I + P G R AVV + LF G ++IRR +++ L I+ L Sbjct: 356 GSLLFLQHMISKMKPVEEGGSRIAVVFNGSPLFTGDAGSGESNIRRWIIENDWLEAIIAL 415 Query: 341 PTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQP 400 P +FY G+ T V + D Y + KR + + Sbjct: 416 PDQLFYNTGIYTYVWIVSNKKSDRRKGKVQLIDGTQHYQ-KMAKSLGDKRNELSPAQIAD 474 Query: 401 FERVYGEDPHGLSPRTEGEWSFN 423 R+Y + G S R ++ Sbjct: 475 LTRLYADFKDGASGRISTKFCSK 497 >UniRef50_C0W5F1 Type I restriction-modification system methyltransferase subunit n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W5F1_9ACTO Length = 687 Score = 266 bits (680), Expect = 1e-69, Method: Composition-based stats. Identities = 100/560 (17%), Positives = 179/560 (31%), Gaps = 95/560 (16%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK-------------------- 41 + V+ +WK+ + LR G Y + + L Sbjct: 10 KTTNYVSFIWKIANLLR-GDYKEHEYGDVILPFTVLTRLDSVLVDTKTDVLAIRDQKGVP 68 Query: 42 -ETGQEAEYLPEGY-RWDDLK------SRIGQEQLQFYRKMLVHLGEDDKKLVQ-AVFHN 92 E + GY W+ + R + + + +++ F+ Sbjct: 69 AEVKRIQYARATGYPFWNASRFTLHTLKNDPDNLEGNLRSYVEGFSRNARDVLKSYDFYT 128 Query: 93 VSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTP 152 V + + +V S +D G ++E L+++ + AG++FTP Sbjct: 129 VIDRLDRSDLLYQIVDAFTDPAVDFSPAAVSNEDMGSIFEELIRRFNELSNETAGEHFTP 188 Query: 153 RPLIKTIIHLL---------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDT 203 R +I+ ++ +L +P + DP GT G L A Sbjct: 189 REVIQLMVEVLFGPDMNAICEPGFMASLYDPGVGTGGMLSAAIERAHELNEGAR------ 242 Query: 204 QDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIV 263 G EL P T +A + L+ + + GN+L +D + + Sbjct: 243 ------IEVYGQELNPQTYAVAKSDILIKGDDAERIY-----FGNSLTADRTAGRTFNYM 291 Query: 264 ATNPPFGSAA---------------GTNITRTFVHPTSNKQLCFMQHIIETLH------- 301 NPPFG + S+ F+QH+I + Sbjct: 292 LCNPPFGVEWKKYADPIKDEAEKRGWKGRFGAGLPRISDGSFLFLQHMISKMKPYDPADI 351 Query: 302 ---PGGRAAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVL 355 PG R +V + LF G ++IRR +++ L I+ LP +FY G+ T V Sbjct: 352 QNAPGTRIGIVFNGSPLFTGSAGQGESNIRRWILENDWLEAIIALPDQMFYNTGILTYVW 411 Query: 356 FFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPR 415 + + D ++ R P KR T++++ R+YG+ Sbjct: 412 VLSNRKASIRKNKVQLIDATGLF-ARMRKPLGEKRKYLTEDNIAQIARIYGDF------- 463 Query: 416 TEGEWSFNAEETEVADSEENKNTDQHLA-TSRWRKFSREWIRTAKSDSLDISWLKDKDSI 474 TE E S + E E L T+ + R W +L S K + Sbjct: 464 TEDEHSKIFDTCEFGFHEVTVERPLRLNFTATPERIERLW-EQTPFKNLATS-KKRSEPA 521 Query: 475 DADSLPEPDVLAAEAMGELV 494 + + + + L Sbjct: 522 RSQEIKDGKKTQQAIIDTLE 541 >UniRef50_C9MRT4 Type I restriction-modification system, M subunit n=3 Tax=Prevotella RepID=C9MRT4_9BACT Length = 508 Score = 265 bits (678), Expect = 2e-69, Method: Composition-based stats. Identities = 129/496 (26%), Positives = 206/496 (41%), Gaps = 64/496 (12%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVS-YQNYVNELASLLFLKMCKETGQEAEYL--------- 50 M N++V +L + D G++ + ++ + FLK+ + EY Sbjct: 1 MAVNNIVKRLQNIMRQ--DAGINGDAQRIEQMTWMFFLKVYDTQEETWEYKASKERTTFE 58 Query: 51 ---PEGYRWDDL-------KSRIGQEQLQFYRKMLVHLGE---------DDKKLVQAVFH 91 PE RW + + G L F L + K +V+ VF Sbjct: 59 SIIPEKLRWRNWAIDEKDGDAMTGDALLSFINDKLFPTLKGLEVTRETPRSKAIVKEVFE 118 Query: 92 NVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFT 151 +++ + + +V+ ++ +++ + R FGD+YEG+L+ ++ AG+++T Sbjct: 119 DLNQYMKNGILLRQVVNVINEIEFDDAT---DRHMFGDIYEGILKDL--QSAGNAGEFYT 173 Query: 152 PRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRA 211 PR L II L P E V D +GT GFL A Y++ Q DD +A Sbjct: 174 PRALTDFIIQQLSPVLGETVGDFTSGTGGFLTSALNYLQKQVKTTDD------RRLFQKA 227 Query: 212 FIGLELVPGTRRLALMNCLLHDIE-GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFG 270 IG E P L++ N LLHD+E N+ H ++ T SD + K +++A NPP+G Sbjct: 228 VIGHEWKPLPYLLSITNLLLHDVESPNIRHCDSL---GTKMSDFKEGDKVNVIAMNPPYG 284 Query: 271 SAAGTNITRTFV--HPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLF-EGGKGTDIRRD 327 + F +S FM I+ L GRAAV+VPD LF G I++ Sbjct: 285 GSTDAASKSNFPMEFRSSETADLFMVLIMYRLKANGRAAVIVPDGFLFGTDGAKLAIKQK 344 Query: 328 LMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVY--DLRTNM 384 ++ +LHTI+RLP IF + TN+LFF ++ T+ W Y D+ Sbjct: 345 MLRDFNLHTIIRLPGSIFAPYTSIATNILFFNNERAEGADEGF-STNKTWFYRLDMPEGY 403 Query: 385 PSFGKRTPFTDEHLQPFERVY-----------GEDPHGLSPRTEGEWSFNAEETEVADSE 433 F K EH QP + GE + + E FN ++ + E Sbjct: 404 KHFSKTKSMRLEHCQPICDWWNDRKEIASDELGEKARCFTAKELAELDFNFDQCKFPKDE 463 Query: 434 ENKNTDQHLATSRWRK 449 E L + + K Sbjct: 464 EEILPPAELLANYFMK 479 >UniRef50_C3XHF2 Type I restriction-modification system M subunit n=2 Tax=Campylobacterales RepID=C3XHF2_9HELI Length = 496 Score = 264 bits (674), Expect = 7e-69, Method: Composition-based stats. Identities = 122/508 (24%), Positives = 209/508 (41%), Gaps = 63/508 (12%) Query: 9 KLWKLCDNLRD--GGVSYQNYVNELASLLFLKMCKETGQEA------------EYLPEGY 54 + KL + +R G + ++ +LFLK+ +E +PE Sbjct: 3 NIKKLQNIMRQDAGVNGDAQRMEQITWILFLKLYDYYEKEWTALNEMNGTEYHSIIPEHL 62 Query: 55 RWDDL----KSRIGQEQLQFYRKMLVHLGED---------DKKLVQAVFHNVSTTITEPK 101 RW+ KS G+ L F L + ++ +V+ VF +++ + + Sbjct: 63 RWESWAVGEKSPTGEPLLTFINNELFPTLKALNITESTPLNQSIVRKVFEDLNNYMKDGY 122 Query: 102 QITALVSNMDS-LDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTII 160 + +++ ++S L +N K +YE L+ ++ AG+++TPR + + ++ Sbjct: 123 LLREVINEIESSLKIHNRQDFKE---LCKVYESFLK--TLQSAGNAGEFYTPRAVTEFMV 177 Query: 161 HLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPG 220 +L P+ E V D A GT GFLI A +++ Q N ++ +F G+E Sbjct: 178 EMLSPKLGESVADLACGTGGFLISAAHFLEKQVNLT------SERKVFETSFYGVEKKSL 231 Query: 221 TRRLALMNCLLHDIE-GNLDHGGAIRLGNTLGSDGE--NLPKAHIVATNPPFGSAAGTNI 277 L N L++ IE NL HG A N D PK I+ NPP+G + Sbjct: 232 PFLLCATNLLINGIENPNLKHGNAFDFSNFEDFDINLTKYPKFDIILMNPPYGGNERGDD 291 Query: 278 TRTFV--HPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGT-DIRRDLMDKCHL 334 + F + +S FM I+ L G+AAVV+PD LF +++R L+ +L Sbjct: 292 IKNFPQEYKSSETVDLFMALILHRLSYKGKAAVVLPDGFLFGADNAKINLKRKLLSDFNL 351 Query: 335 HTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVY--DLRTNMPSFGKRT 391 + ILRLP +F + TN+LFF D T Y D+ + SFGK Sbjct: 352 YLILRLPKSVFAPYTSIPTNLLFFN--------ADPQGTQHTHFYRLDMPEGIKSFGKTK 403 Query: 392 PFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFS 451 + EH +PF + + L + + + + E+ N + +++ Sbjct: 404 QMSLEHFEPFLQWWESGKQTLQDESGNFKAKSYTKEELEARNYNFDLCGYVS-------E 456 Query: 452 REWIRTAKSDSLDISWLKDKDSIDADSL 479 E I I +DK + DS+ Sbjct: 457 EEEILAPLELMEQIKTERDKLNATLDSI 484 >UniRef50_C8RRG5 Type I restriction-modification system, M subunit N-6 adenine-specific DNA methylase n=2 Tax=Corynebacterium RepID=C8RRG5_CORJE Length = 689 Score = 263 bits (671), Expect = 1e-68, Method: Composition-based stats. Identities = 110/600 (18%), Positives = 201/600 (33%), Gaps = 107/600 (17%) Query: 4 NDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKE-------------------TG 44 V+ +W + + LR G Y + + L Sbjct: 13 TSHVSLIWNIAEILR-GDYKEHEYGDVVLPFTVLTRLDSVLVDTKQAVLDIKATSVPNKI 71 Query: 45 QEAEYLPE-GYRW---DDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAV-----FHNVST 95 +E Y E GY + + + + + L + + + V F+NV Sbjct: 72 KELRYAKETGYPFWNTSNFTLKTLLDDADNLEQNLTYYVQAFAPAAREVMEAYNFYNVIE 131 Query: 96 TITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPL 155 + + + ++ S S D G ++E L+++ + + AG++FTPR + Sbjct: 132 RLDKSDLLYHVLKEFTSAKVNLHPDVVSNDQMGYIFEELIRRFSELSNETAGEHFTPREV 191 Query: 156 IKTIIHLLKPQPRE-----------VVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQ 204 I +++LL + + DP GT G L A ++V Sbjct: 192 ISLMVNLLFNPEEDINRLCADGAMASLYDPGVGTGGMLSTAAQHVNDLNESAR------- 244 Query: 205 DFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVA 264 G EL P T +A + ++ + I GN+L +D + + Sbjct: 245 -----LEVYGQELNPQTYAVAKSDIMIKG-----ERQERIYFGNSLTNDKTAGMRFDYML 294 Query: 265 TNPPFGSAAGT---------------NITRTFVHPTSNKQLCFMQHIIETLHP------- 302 NPPFG S+ F+QH+I + P Sbjct: 295 CNPPFGVNWKKYADPILDEAEHKGYQGRFGAGTPRVSDGSFLFLQHMISKMKPYDPMDLV 354 Query: 303 ---GGRAAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLF 356 G R +V + LF GG ++IRR +++ L I+ LP +FY G+ T + Sbjct: 355 NAAGTRIGIVFNGSPLFTGGAGQGESEIRRWILENDWLEAIIALPDQMFYNTGILTYIWV 414 Query: 357 FTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRT 416 + + D + R P KR T+ ++ R+YG R Sbjct: 415 LSNKKERHRKNKVQLIDATQYFQ-RMRKPLGEKRKELTETNIADITRIYGAFQETEESRI 473 Query: 417 EGEW---------------SFNAEETEVADSEENKN-TDQHLATSRWRKFSREWIRT-AK 459 SF A + ++ K TD ++ R E I + Sbjct: 474 FETEDFAYHEVVVERPLRLSFQATPDAIESLKQTKPFTDLAMSRKRTEPARTEEIDAGKR 533 Query: 460 SDSLDISWLKDKDSID-ADSLPEPDVLAAEAMGELVQ--ALSELDALMRELGA-SDEADL 515 + I+ L+ D+ + E L E++ + + ++ L ++ LG + +AD+ Sbjct: 534 VQNAIIATLEALDAERVYLNRDEFTDLIRESIKKRGEKIGIAALRKIVAGLGTKNPDADI 593 >UniRef50_P75436 Putative type I restriction enzyme MpnORFDP M protein n=2 Tax=Bacteria RepID=T1MD_MYCPN Length = 543 Score = 263 bits (671), Expect = 2e-68, Method: Composition-based stats. Identities = 90/574 (15%), Positives = 201/574 (35%), Gaps = 117/574 (20%) Query: 3 NNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKET------GQEAEYLPEGYRW 56 N + K+W++ D LR G + ++ + + LF + E E P+ + + Sbjct: 9 RNGVEKKIWEIADKLR-GTIDGWDFKSYVLIGLFYRFLSENLCKYFNDSERRNNPD-FSY 66 Query: 57 DDL------------------------------------KSRIGQEQLQFYRKMLVHLGE 80 ++L +++ ++ R + + + Sbjct: 67 ENLTDDYEAIDALKDAAIASKGFFIKPSQLFQNVVKSIRENKNNEDLNTTLRDIFDDIEK 126 Query: 81 DD-------KKLVQAVFHNVS--------TTITEPKQITALVSNMDSLDWYNGAHGKSRD 125 K+ + +F + + T +++ L++++D+++ S D Sbjct: 127 STELGDGRSKESFKGLFKDFNVSEVKLGSTLTIRTEKLKELLTSIDTMELDEFEKN-SID 185 Query: 126 DFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREV--VQDPAAGTAGFLI 183 FGD YE L+ A G++FTP+ + + + + + V V D A G+ L+ Sbjct: 186 AFGDAYEFLISMYAQNAGKSGGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLL 245 Query: 184 EADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE---GNLDH 240 + + + + L ++ G E+ T L MN +LH+I+ N+ + Sbjct: 246 QVIKVLGKEKTSL-------------VSYYGQEINHTTYNLCRMNMILHNIDYANFNIIN 292 Query: 241 GGAIRLGNTLGS--DGENLPKAHIVATNPPFGSAAGTNITRTFV-----------HPTSN 287 + + N +V +NPP+ + + V P S Sbjct: 293 ADTLTTKEWEKHYVNCSNENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSK 352 Query: 288 KQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYA 347 L F+ H + L G AA+V +L+ GK IR+ L+D+ + +++LP+ +F Sbjct: 353 ADLAFVLHALYVLGQEGTAAIVCFPGILYREGKEQTIRKYLVDQNFVDAVIQLPSNLFST 412 Query: 348 QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGE 407 + T++L K ++ D ++ D K + ++++ + Sbjct: 413 TSIATSILVLKKN--------RDKKDPIFFIDGSNEFVREKKNNRLSPKNIEKIVDCFNS 464 Query: 408 DPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISW 467 A + + ++ + ++ L ++ E + LDI Sbjct: 465 KKE------------EANFAKSVERDKIRESNYDLTVGKYVNSEAE------KEELDIKV 506 Query: 468 LKDKDSIDADSLPEPDVLAAEAMGELVQALSELD 501 L D + + + ++ +D Sbjct: 507 LNHSIDEIVDKQKDLRTKIKDIIQDIKVDFDNID 540 >UniRef50_C4WKW1 Type I restriction enzyme EcoEI specificity protein n=1 Tax=Ochrobactrum intermedium LMG 3301 RepID=C4WKW1_9RHIZ Length = 865 Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats. Identities = 119/535 (22%), Positives = 204/535 (38%), Gaps = 79/535 (14%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEY----------L 50 M + D ++ D L ++ V ++ L K + EAE Sbjct: 1 MLDPDTKRRIDTCRDILVGKVPDPKSQVEQITIALIYKFMDDMDLEAEELGGERRFFTKD 60 Query: 51 PEGYRWDDLKSR--IGQEQLQFYRKMLVHLGEDD--KKLVQAVFHNVSTTITEPKQITAL 106 E YRW L + GQ+ L Y + L ++ +++ KL + +F N +P+ + A Sbjct: 61 YERYRWAKLVAPGVSGQDMLNTYSEALTNMVQNEGLPKLFRDIFRNAYLPYRDPETLRAF 120 Query: 107 VSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQ 166 + ++S + + GD +E LL ++ AGQ+ TPR +I ++ ++ PQ Sbjct: 121 LREINSFTYDHSEK------LGDAFEYLLSVLGSQ--GDAGQFRTPRHIIDFMVEIINPQ 172 Query: 167 PREVVQDPAAGTAGFLIEADRYVKSQTND-------------------------LDDLDG 201 EV+ DPA GTAGFLI A +++ Q + DL Sbjct: 173 KNEVIMDPACGTAGFLISAYKHILKQNSTGVVNSNGASTEGDAAEQALESPMRYPGDLLQ 232 Query: 202 DTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAH 261 ++ R G ++ P RL+L+N LH + +TL S+ + A Sbjct: 233 PDDRARLARNIRGYDISPDMVRLSLVNLYLHGFAD-----PKVEEYDTLTSEDKWTETAD 287 Query: 262 IVATNPPF-GSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGK 320 ++ NPPF G F + ++ F+ +I E L P GRAA+VVP+ ++F+ Sbjct: 288 VILANPPFMSPKGGIKPHTRFQVQSKRSEVLFVDYIAEHLTPNGRAAIVVPEGIIFQSQS 347 Query: 321 GT-DIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVY 378 +R+ L++ L ++ LP G+F GVKT++L + + V + Sbjct: 348 AYVALRKMLVENH-LAAVISLPAGVFNPYSGVKTSILILDRAVA-------KASQHVAFF 399 Query: 379 DLRTNMPSFG-KRTPFTDEHLQ----PFERVYGEDPHGLSPRTEGEWSFNAEETEVADSE 433 + + + G +R L G E F E E+ Sbjct: 400 KIENDGFALGAQRKAVKGSQLAQVKTELAAWLKAARAGGGKELESNVGFAVERKELLAEG 459 Query: 434 ENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAE 488 L+ R+ +RE + L D+ +S P E Sbjct: 460 SI-----TLSAERY--LTRE----IGKSGFPMVSLGDEALFKVESGGTPKSDVPE 503 >UniRef50_D1SQT0 N-6 DNA methylase n=1 Tax=Acidovorax avenae subsp. avenae ATCC 19860 RepID=D1SQT0_9BURK Length = 483 Score = 260 bits (665), Expect = 7e-68, Method: Composition-based stats. Identities = 98/450 (21%), Positives = 166/450 (36%), Gaps = 63/450 (14%) Query: 66 EQLQFYRKMLVHLGEDDKKLVQAVFHNVSTT---ITEPKQITALVSNMDSLDWYNGAHGK 122 + + + L +L ED L+Q VFH+VS + P+Q ++S D LD + G Sbjct: 78 DLGKRIDQALANL-EDRHPLLQGVFHDVSFDSAALGNPEQRQRILS--DWLDQFGGLEFD 134 Query: 123 SRDD-----FGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAG 177 RD+ E L+ + A + ++FTP + + I +L+P+ E V DP G Sbjct: 135 YRDENAAESVAFACETLISEVAAASGRRGAEFFTPPQVSRLIAQILQPEAGESVGDPCCG 194 Query: 178 TAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD-IEG 236 + L+ + ++++ G E T LA +N L+H + Sbjct: 195 SGTLLLACSAFARARSGYEG------------CQLFGQEKNGSTWALAKINMLVHGELTA 242 Query: 237 NLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAG---------TNITRTFVHPTSN 287 L+ G ++ L +DG L + +V +NPPF R + P Sbjct: 243 QLEWGDTLK-DPRLVADG-RLREFDVVVSNPPFNVKDWGQEAAANDLYGRYRRGIPPRGT 300 Query: 288 KQLCFMQHIIETLHPG-GRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFY 346 F+ H++ETL PG GR AVVV VLF G IRR L+++ + ++ LPT + Sbjct: 301 ADYAFLSHMVETLKPGRGRMAVVVSHGVLFRSGAELQIRRQLLEEGLVDAVIALPTKLLP 360 Query: 347 AQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYG 406 + +L K V + DE L E Y Sbjct: 361 NTPLPIALLVLRKDKS---------DRRVLFIKASRQFEHGKTQNRLRDEDLAQIEATYV 411 Query: 407 EDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDIS 466 + E+ D +L +R+ + +D+ Sbjct: 412 ARAD------------VEGYARLVSLEDILQNDCNLNVARYVE------AVEPVCQVDLE 453 Query: 467 WLKDKDSIDADSLPEPDVLAAEAMGELVQA 496 L+ + S L + + A + E+ + Sbjct: 454 ALRAERSQLRAELEDLESRFASLIQEMSRG 483 >UniRef50_A5GE24 N-6 DNA methylase n=13 Tax=Bacteria RepID=A5GE24_GEOUR Length = 777 Score = 260 bits (665), Expect = 8e-68, Method: Composition-based stats. Identities = 93/499 (18%), Positives = 175/499 (35%), Gaps = 84/499 (16%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK------------------- 41 +N + A +W + D LR G Y + L+ + Sbjct: 3 INFSQTAAFIWSVADLLR-GDFKQSQYGRIILPFTLLRRLECVLEQSKPAVLAKHAEVSK 61 Query: 42 -----ETGQEAEYLPEGYRWDDLK----SRIGQEQL-QFYRKMLVHLGEDDKKLVQAV-F 90 E ++ + ++ S++G+ + + +D +++ + F Sbjct: 62 MNLPEEAYEKMVLRATDESFFNISPMDLSKLGESGIKDNLENYIQCFSKDAREIFEYFKF 121 Query: 91 HNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYF 150 + + + +V + D S + G ++E L+++ A + AG++F Sbjct: 122 AEFIGQLNDANLLYKVVQKFANTDL--SPQAISNYEMGLVFEELIRRFAESSNETAGEHF 179 Query: 151 TPRPLIKTIIHLLKPQPRE---------VVQDPAAGTAGFLIEADRYVKSQTNDLDDLDG 201 TPR +++ L+ + E + DP AGT GFL YV Sbjct: 180 TPRDIVRLTTSLVFMEDDEALTRDGIIRTIYDPTAGTGGFLSSGMEYVYELNPKAVMRA- 238 Query: 202 DTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAH 261 G EL P + + + L+ + + I+LGNTL +D K Sbjct: 239 -----------FGQELNPESYAICKADMLIKGQDVSR-----IKLGNTLSNDQLYADKFD 282 Query: 262 IVATNPPFGSAAGTNITR---------------TFVHPTSNKQLCFMQHIIETLHP---- 302 + +NPPFG T + S+ L F+ H+I L Sbjct: 283 YMLSNPPFGVDWKKVETEINDEHTLKGFAGRFGPGLPRVSDGSLLFLMHLISKLRDTKDG 342 Query: 303 GGRAAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTK 359 GGR +++ + LF GG ++IRR +++ L I+ LPT +FY G+ T V + Sbjct: 343 GGRIGIILNGSPLFTGGAGSGESEIRRYILEADLLEAIVALPTDMFYNTGIATYVWVLSN 402 Query: 360 GTVANPNQDKNCTDDV-WVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEG 418 + V +R ++ S KR ++ + R +G + + Sbjct: 403 KKDPERKGKVQLINGVNLCAKMRKSLGS--KRNVMGEDDIATITRAFGRFERVDTLTLDK 460 Query: 419 EWSFNAEETEVADSEENKN 437 + AD+ + Sbjct: 461 PDEVKSNRGRQADNPKAPE 479 >UniRef50_D1VS23 Type I restriction-modification system methyltransferase subunit n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VS23_9FIRM Length = 983 Score = 260 bits (664), Expect = 9e-68, Method: Composition-based stats. Identities = 112/482 (23%), Positives = 200/482 (41%), Gaps = 46/482 (9%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQ-NYVNELASLLFLKMCKETGQEAEY------LPEGY 54 + +L+ + + LR G+ E A++LFLK+ E+ Q Sbjct: 151 DRRELIRIFDEANNMLRGEGLRAGIERFGEFANILFLKLISESEQIKRESGINTNFENAC 210 Query: 55 RWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLD 114 WD +K+ ++++ K + D + +F + I + + ++ +D L Sbjct: 211 SWDSIKNIPISTRIEYINKTVYEKLNDLYET--DIFTPLQ--IRDTSILKEIMDKLDPLT 266 Query: 115 WYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDP 174 + D GD +E L K + TK+ G+YFTPR ++KT++ L+ PQ E + DP Sbjct: 267 LTD----VDSDVKGDAFEYFL-KASTSTKNDLGEYFTPRHIVKTMVRLVNPQIGETIYDP 321 Query: 175 AAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD- 233 GT GFLIE+ R++ + D ++ + G E+ T R+ MN +L Sbjct: 322 FCGTGGFLIESFRHIYNNMARTDANLKMLRE----KTVYGNEI-TNTARITKMNMILAGD 376 Query: 234 IEGNLDHGGAIRLG----NTLGSDG--ENLPKAHIVATNPPFGSAAGTNITRTFVHPTSN 287 N+ ++ +T + E+ IV N P+ T + P++N Sbjct: 377 GHSNIKMKDSLANPIDGKSTYIDEKGEEHHNGYDIVLANMPYSQK--TKYGNLYDLPSNN 434 Query: 288 KQLCFMQHIIETL---HPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGI 344 +QH I+ + GR A+VVP+ LF T R L++ C L +++ LP G+ Sbjct: 435 GDSICVQHCIKAVDSASENGRIALVVPEGFLFRKDL-TKTREYLLENCQLQSVISLPQGV 493 Query: 345 FYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGK-RTPF-TDEHLQPF 401 F GVKT++++ TK V D W +D++++ S R T L + Sbjct: 494 FLPYTGVKTDIIYATK--VNRKISSSEKRKDFWYFDVKSDGYSLDNHRRKLDTPSDLSKY 551 Query: 402 ERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSD 461 E D + + + EV ++ L SR+R + + ++ + Sbjct: 552 EEYRKLDDDQVEDMLKVGF-------EVIPLDKVYKNSNILVGSRYRTHTVKKSKSHEMV 604 Query: 462 SL 463 L Sbjct: 605 KL 606 >UniRef50_C8W115 Type I restriction-modification system, M subunit n=14 Tax=Bacteria RepID=C8W115_DESAS Length = 584 Score = 260 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 90/490 (18%), Positives = 168/490 (34%), Gaps = 75/490 (15%) Query: 36 FLKMCKETGQEAEYLPEGYRWDDLKSRIGQE---QLQFYRKMLVHLG-EDDKKLVQAVFH 91 F K + + Y W ++ + LQ + + E + +F Sbjct: 132 FEKQMRRKVH--FVIKPHYLWSNIYELARTQSKYLLQTLQAGFKFIENESFDSAFRGLFS 189 Query: 92 NVSTTITEPKQITA-----LVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGA 146 V+ + + L S + + D G+ YE L+ + A+ + A Sbjct: 190 EVNLDSDKLGRNYEARNTMLCSIITEIAEGLSEFTNETDLLGNAYEYLIGQFASGSGKKA 249 Query: 147 GQYFTPRPLIKTIIHLL-----KPQPREVVQ-----DPAAGTAGFLIEADRYVKSQTNDL 196 G+++TP+ + + ++ P + D A G+A LI ++++ + Sbjct: 250 GEFYTPQQISNILSRIVILDSQDPSTGKKPYINNLLDFACGSASLLINVKKHLEPNSIS- 308 Query: 197 DDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLH---DIEGNLDHGGAIRLGNTLGSD 253 G E T LA MN LLH D E + HG ++ + ++ Sbjct: 309 --------------QIYGQEKNITTYNLARMNMLLHRFKDSEFQIFHGDSLLNDWDILNE 354 Query: 254 GENLPK--AHIVATNPPFGSAAGTN--------ITRTFVHPTSNKQLCFMQHIIETLHPG 303 K V NPPF N + P S F+ H L Sbjct: 355 MNPAKKLKCDAVVANPPFSYRWEPNDTLAEDFRFKSYGLAPKSAADFAFLLHGFHFLSDE 414 Query: 304 GRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVA 363 G A+++P VLF GG IR L++ ++ TI+ LP +F++ G+ +L K Sbjct: 415 GTMAIILPHGVLFRGGAEEKIRTKLLEDGNIDTIIGLPANLFFSTGIPVCILVLKKCKKF 474 Query: 364 NPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFN 423 DDV + ++ EH+ Y + ++S Sbjct: 475 ---------DDVLFINASEYFDKGKRQNILLPEHIDKIVDTYQ-----FRKEEDKKYSRR 520 Query: 424 AEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPD 483 E+ + N N ++++T+ + +D++ +K K D++ Sbjct: 521 VSMKEIEKNGFNLNISRYVSTAAEEEI------------VDLADVKKKLDETEDAIKRAK 568 Query: 484 VLAAEAMGEL 493 + + EL Sbjct: 569 AKHNQFLKEL 578 Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 53/128 (41%), Gaps = 15/128 (11%) Query: 3 NNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLP--------EGY 54 L A LW + D LR G ++ ++ + + S LFL+ + +EA E Sbjct: 6 QKQLGATLWAIADKLR-GAMNPDDFRDYMLSFLFLRYLSDNYEEAAKKELGSDYLQCENE 64 Query: 55 RWDDLKSRIGQEQLQFYRKMLVH--LGEDDKKLVQAVFHNVSTTITEPKQITALV----S 108 + E + ++ + + ++ ++ V+ + + + E K++T L+ Sbjct: 65 IESIYNAGKQDETISLLKEQVTDYFIKQELEENVKNMMIDDHLVLFESKKLTPLIVWYNK 124 Query: 109 NMDSLDWY 116 N+D + + Sbjct: 125 NLDQIVTF 132 >UniRef50_B7K553 N-6 DNA methylase n=13 Tax=cellular organisms RepID=B7K553_CYAP8 Length = 676 Score = 260 bits (663), Expect = 1e-67, Method: Composition-based stats. Identities = 83/489 (16%), Positives = 172/489 (35%), Gaps = 80/489 (16%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK---ETGQE------------ 46 N + V+ +W + D +RD Y + + L+ E +E Sbjct: 3 NFGEKVSFIWSVADLIRDS-FKRGKYQDVILPFTVLRRLDCVLEPTKEQVLEAYHKYHGK 61 Query: 47 --------------AEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAV-FH 91 A Y Y + L + +K + + +++++ F Sbjct: 62 LENLDPILCKQSGFAFYNASNYDFGKLIDDPK-DLGANLKKYINSFSSNMREVLEKFDFP 120 Query: 92 NVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFT 151 N + E + ++ ++D + S + G ++E L++K G++FT Sbjct: 121 NTIDKLEEADLLFQVMEKFKTIDLH--PDKVSNLEMGYIFEELIRKFNEALDENPGEHFT 178 Query: 152 PRPLIKTIIHLLKPQPRE---------VVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGD 202 PR +I+ ++ LL Q ++ + DP G+ G L A + + Sbjct: 179 PREVIRLMVSLLLSQDKDSLKQAHITRTIYDPCCGSGGMLTIAKERILELNPNATVF--- 235 Query: 203 TQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHI 262 G E+ P T + + + +G I+ G+TL +D + Sbjct: 236 ---------LFGQEVNPETFAICKSDLYMKSEDG--KDADNIKFGSTLSNDQHSDKSFDY 284 Query: 263 VATNPPFGSAAGTNIT-------------RTFVHPTSNKQLCFMQHIIETLHP----GGR 305 + NPP+G + S+ QL F+Q ++ + G R Sbjct: 285 LLANPPYGKDWKRDKDAVETEAQKTGSRFSAGTPRISDGQLLFLQQMLARMKSPENGGSR 344 Query: 306 AAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTV 362 A+V+ + LF G ++IRR +++ L I+ LP +FY G+ T + + + Sbjct: 345 VAIVMNGSPLFTGDAGSGESEIRRWILENDWLEAIIALPEQLFYNTGISTYIWILSNKKL 404 Query: 363 ANPNQDKNCTDDVWVYD-LRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWS 421 + + + +R ++ KR + EH++ ++ + +T Sbjct: 405 LQKKEKVQLINGSDFWVAMRKSL--GDKRREISTEHIEKITAIFQDFEVSEVSKTFNSTD 462 Query: 422 FNAEETEVA 430 F + + Sbjct: 463 FGYRKITIE 471 >UniRef50_C9L2F5 Type I restriction-modification system, M subunit n=1 Tax=Bacteroides finegoldii DSM 17565 RepID=C9L2F5_9BACE Length = 494 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 102/482 (21%), Positives = 165/482 (34%), Gaps = 66/482 (13%) Query: 14 CDNLRDGGVSYQNYVNELASLLFLKMCKETG------QEAEYLP-------EGYRWDDLK 60 + G +S Y + + +LLFLK E Q E P E +D L Sbjct: 16 AKQILGGTLSVNQYKDYVLALLFLKSASEYYKSNDSFQSDENKPFLRLLVSERSSFDYLY 75 Query: 61 SRIGQ-EQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEP---------KQITALVSNM 110 +G E + L L + + ++++ N + ++ L+ Sbjct: 76 KELGSLELGKLINVALYELEQANSRVIEGYEINRAINFESNILGDTDERLSKLRELLHFF 135 Query: 111 DSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL-KPQPRE 169 L + A D G +Y LL A E TP+ +I + L+ + Sbjct: 136 QKLTLTDDAGKLI--DIGALYNLLLYIFAEEAGKKINNVLTPKEVIGLVAELIGDNKDNN 193 Query: 170 VVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNC 229 + DP +G+ L+E + V + + G E L MN Sbjct: 194 SLCDPVSGSGTLLVEVGKRVGIRGAN----------------IFGQEANWNQYALTKMNL 237 Query: 230 LLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITR--------TF 281 +L+ + + G L DG L + IVA+ PPF T Sbjct: 238 MLNGFKDSTFFWGDSLSNPKLTDDG-GLKRFDIVASIPPFADKWATEEAEFDRYGRFQYG 296 Query: 282 VHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLP 341 + P S ++ HI+ +L P GRA VVVP VLF + IR +++ L ++ LP Sbjct: 297 IPPRSQATWAYISHILASLKPNGRAVVVVPAGVLFRTS-ESKIRHQIIEHNLLEAVIELP 355 Query: 342 TGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPF 401 +FY + T +L F K T D R S +D ++ Sbjct: 356 QNLFYGAAISTAILVFRK---------DRKTTQTLFMDARKGYISNKGIYKLSDTMVEQL 406 Query: 402 ERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSD 461 Y G E W N+ +A EE +N T ++ + E + Sbjct: 407 LNTYKGFLSG-----EQVWQENSCPAYIATQEEVRNNKYDWQTVKYVEEKIERVEVDVEA 461 Query: 462 SL 463 +L Sbjct: 462 TL 463 >UniRef50_A0YWS1 Type I restriction-modification system methyltransferase subunit n=2 Tax=Bacteria RepID=A0YWS1_9CYAN Length = 694 Score = 259 bits (661), Expect = 2e-67, Method: Composition-based stats. Identities = 94/494 (19%), Positives = 161/494 (32%), Gaps = 80/494 (16%) Query: 1 MNNNDLVA-KLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAE----------- 48 M+N A +WK+ D LR G + Y + + ++ L+ + + Sbjct: 1 MSNFQATADFIWKIADLLR-GNYQRREYPDVILPMVVLRRLDQAMENTRQAVRDEWNKYH 59 Query: 49 -------------------YLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAV 89 Y Y W L Q L D +++ Sbjct: 60 GKLENLDPLLRAAAGDSPVYNTSEYYWRRLLDDR-PNLAQNLINYLNGFSPDVLDIIEKF 118 Query: 90 -FHNVSTTITEPKQITALVSNMDSLDWYN---GAHGKSRDDFGDMYEGLLQKNANETKSG 145 F + + + L +D + G + G ++E L+ + + Sbjct: 119 DFRRQVSRLNTANLLPILFDEFTKIDLHPPREDGTGVDNLEMGRIFEHLIYRFNQDNNET 178 Query: 146 AGQYFTPRPLIKTIIHLLKPQPR--------EVVQDPAAGTAGFLIEADRYVKSQTNDLD 197 AG++FTPR +I+ ++ LL P+ + DPA GT G L EA Y+ Sbjct: 179 AGEHFTPREVIRLMVRLLFPEDDPTLHPDNILTIYDPACGTGGMLTEAKEYIHDIQTRKY 238 Query: 198 DLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENL 257 G G E+ P +A + LL + I GN+ DG Sbjct: 239 QKIGQVH-------LFGQEINPTAFAVAKSDFLLKGEDPRR-----ITFGNSFSEDGYPE 286 Query: 258 PKAHIVATNPPFGSAAG---------------TNITRTFVHPTSNKQLCFMQHIIET--L 300 + + +NPPFG + ++ L F+QHI+ Sbjct: 287 RRFRYMLSNPPFGVDWKKVQYIIKREYETQGFDGRFGAGLPRINDGSLLFLQHILSKRAK 346 Query: 301 HPGGRAAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFF 357 R +V + LF G ++IRR +++ L I+ LP +FY G+ T + Sbjct: 347 EEPSRTVIVFNGSPLFTGDAGSGESNIRRWIIENDWLEGIVALPDQLFYNTGISTYLWVL 406 Query: 358 TKGTVANPNQDKNCTDDVWVYD-LRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRT 416 + V Y +R ++ + KR T+E +Y G + Sbjct: 407 NNRKSNKRKGKIQLVNAVNFYQKMRKSLGN--KRNEITEEQYNEIANIYHAFSTGDNCLI 464 Query: 417 EGEWSFNAEETEVA 430 F +V Sbjct: 465 FDNEDFGYRRIKVE 478 >UniRef50_C7RQC1 N-6 DNA methylase n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RQC1_9PROT Length = 769 Score = 257 bits (656), Expect = 8e-67, Method: Composition-based stats. Identities = 103/596 (17%), Positives = 207/596 (34%), Gaps = 103/596 (17%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK-------------------- 41 +N +V+ +W + D++ Y + + + ++ Sbjct: 5 THNKIVSFIWGIADDVLRDLFKRGKYPDVILPMCVIRRMDAVLEPTKQSVLDTRRMLDAA 64 Query: 42 ----------ETGQEAEYLPEGYRWDDLKSRIGQEQLQF-YRKMLVHLGEDDKKLVQAV- 89 + +A Y + DLKSR Q++L + L + + ++ Sbjct: 65 GITEQRAALCDAAGQAFYNTSRFTLRDLKSRGSQQRLLADFEDYLNGFSANVQDILDNFK 124 Query: 90 FHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQY 149 F N T++ I L++ D G G ++E L++K E AG++ Sbjct: 125 FRNQLQTLSRADAIGTLINKFLDPDIDLSPAGIDNHSMGTVFEELVRKFNEENNEEAGEH 184 Query: 150 FTPRPLIKTIIHLLKPQPREVV-------QDPAAGTAGFLIEADRYVKSQTNDLDDLDGD 202 +TPR ++ + +L+ + D A GT G L A+ + + Sbjct: 185 WTPRDAVRLMANLVFRPIESAIRSGTYLLYDCACGTGGMLTVAEETLTAIAAGRGQ---- 240 Query: 203 TQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHI 262 Q+ G E+ P T + + LL + DH +TL D + Sbjct: 241 ----QVRCLLYGQEINPETYAVCKADMLLKGEGESADHIVGGAEWSTLAHDAFPAREFDF 296 Query: 263 VATNPPFGSAAGTNITR---------------------TFVHPTSNKQLCFMQHIIETLH 301 + NPP+G + ++ + V +S+ Q+ F+ ++ ++ Sbjct: 297 MLANPPYGKSWKKDLEAMGGKDGMRDPRFKVMHQGEELSLVTRSSDGQMLFLANMASKMN 356 Query: 302 P----GGRAAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNV 354 G R A V + LF G ++IRR L++ L I+ LP +FY G+ T + Sbjct: 357 GQSALGSRIAEVHNGSSLFTGDAGQGESNIRRWLIENDWLEAIVALPLNLFYNTGIATYI 416 Query: 355 LFFTKGTVANPNQDKNCTDDV-WVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLS 413 + A+ D W LR N+ K + E ++ R + + Sbjct: 417 WVLSNRKPAHRQGRVQLIDASQWFKPLRKNLGK--KNCELSPEDIERISRSFLDFAETPE 474 Query: 414 PRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDS 473 + + A E + + S + I T + +S D +D + Sbjct: 475 SKI---FPNAAFGYWKVTVERPLRL--------YSQLSLKAIETLRFNSGD----EDLRA 519 Query: 474 IDADSLPEPDVLAAEAMGELVQALSELDALMRELGASDEADLQRQLLEEAFGGVKE 529 + + + + L+ + + G+SD+++ + ++ GG K+ Sbjct: 520 TLYEEFGD------DLFTRFSAVSAALEKRLADWGSSDDSEGE----DDEGGGTKK 565 >UniRef50_Q3SFH7 Type I restriction-modification system methyltransferase subunit n=5 Tax=Bacteria RepID=Q3SFH7_THIDA Length = 676 Score = 257 bits (656), Expect = 8e-67, Method: Composition-based stats. Identities = 102/520 (19%), Positives = 178/520 (34%), Gaps = 93/520 (17%) Query: 1 MNNN-DLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK-----------ETGQEAE 48 M+ + +L +W + D LR G Y + L+ L+ + + Sbjct: 15 MSKSHELSNFIWSIADLLR-GPYRPPQYERVMLPLVVLRRFDCVLESTKDAVLAKYAQYQ 73 Query: 49 YLPEG--------------------YRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQA 88 EG ++ LK L + E+ +K+ + Sbjct: 74 GKLEGDALDGVLNKISGQRFHNHSPLSFEKLKGDPDNAHLHLVS-YINGFSENVRKIFER 132 Query: 89 V-FHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAG 147 F N + E + ++ +D + GA + G ++E L+++ + AG Sbjct: 133 FEFGNEIERMREHNILFLVIKKFCEVDLHPGA--VDNIEMGLLFEDLIRRFNEQANETAG 190 Query: 148 QYFTPRPLIKTIIHLL---------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDD 198 +FTPR +I+ ++ LL KP + DP GT G L E +Y++ + Sbjct: 191 DHFTPREVIRLMVSLLFMHDDDLLSKPGTVRKMLDPTCGTGGMLSETRKYLREHQSGARL 250 Query: 199 LDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLP 258 G + P + +A + LL + + I+ G+TL D Sbjct: 251 F------------VYGQDFNPRSYAVAASDLLLRTNLADAE-TSTIKFGDTLIDDQFPGE 297 Query: 259 KAHIVATNPPFGSAAGT---------------NITRTFVHPTSNKQLCFMQHIIETLHP- 302 + NPPFG ++ L F+QH++ P Sbjct: 298 RFDYFLANPPFGVDWKRQQKDVVREHEKQGFAGRFGAGTPRVNDGALLFLQHMVSKFEPV 357 Query: 303 -------GGRAAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKT 352 G R A+V + LF GG ++IR+ +++ L I+ +P +FY G+ T Sbjct: 358 DPANNLDGSRLAIVFNGSPLFTGGAGSGESEIRKWIIENDWLEAIVAMPEQMFYNTGIGT 417 Query: 353 NVLFFTKGTVANPNQDKNCTD--DVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPH 410 V T A D D W LR ++ KR F+D H+ R YG+ Sbjct: 418 YVWVVTNRKEARRRGRIQLIDGRDRW-QSLRRSL--GDKRREFSDAHITDIVREYGDMRD 474 Query: 411 GLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKF 450 + + F + E + R +F Sbjct: 475 NATSKVFDNADFGYNRLTI---ERPLRLAFQITLERKERF 511 >UniRef50_A5WF32 N-6 DNA methylase n=11 Tax=Proteobacteria RepID=A5WF32_PSYWF Length = 806 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 113/607 (18%), Positives = 204/607 (33%), Gaps = 126/607 (20%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYL----------- 50 +N+L A +W + D LR G Y + L+ + +E++ Sbjct: 13 TSNNLAAFIWSVADLLR-GDFKQSQYGRIILPFTLLRRLECVLEESKDAVVEEAQKISAM 71 Query: 51 --PEGYRWDDLK----------------SRIGQEQLQF-YRKMLVHLGEDDKKLVQAV-F 90 E L +++GQ ++ + +D +++ F Sbjct: 72 GLNEEAEAKFLLRKTNGLAFYNTSPMTLAKMGQSDIEANLSHYIQSFSKDAREIFAHFKF 131 Query: 91 HNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYF 150 + + + +V ++D S + G ++E L+++ A + AG++F Sbjct: 132 EEFVGQLNDANLLYKVVQKFQNVDL--SPEAVSNYEMGLVFEELIRRFAESSNETAGEHF 189 Query: 151 TPRPLIKTIIHLLKPQPRE---------VVQDPAAGTAGFLIEADRYVKSQTNDLDDLDG 201 TPR +++ L+ + + + DP AGT GFL YV + Sbjct: 190 TPRDIVRLTTSLVFMEDDDALIKDGIIRTIYDPTAGTGGFLSSGMEYVLELNPNAVMRA- 248 Query: 202 DTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAH 261 G EL P + + + L+ E + I+LGNTL D K Sbjct: 249 -----------FGQELNPESYAICKADMLIKGQEVSR-----IKLGNTLSDDQLPADKFD 292 Query: 262 IVATNPPFGSAAGT------------NITRTFVHPT---SNKQLCFMQHIIETLHP---- 302 + +NPPFG F T S+ L F+ H+I + P Sbjct: 293 YMLSNPPFGVDWKKIAGEIKDEHEQKGFDGRFGPGTPRVSDGSLLFLLHLISKMRPVASP 352 Query: 303 --------------------GGRAAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILR 339 G R +++ + LF GG ++IRR +++ L I+ Sbjct: 353 KRDSLELSNRSSEQQDTSVTGSRIGIILNGSPLFTGGAGSGESEIRRYILESDLLEAIIA 412 Query: 340 LPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVY-DLRTNMPSFGKRTPFTDEHL 398 LPT +FY G+ T V T D +Y +R ++ S KR ++E + Sbjct: 413 LPTDMFYNTGIATYVWILTNHKAPERKGKVQLIDGTNLYSKMRKSLGS--KRNEMSEEDI 470 Query: 399 QPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTA 458 + R +G+ + + + + + + E +T Sbjct: 471 KIITRTFGDFEVVDARALDKPADVKSNRGRQSATPKA-----------------ETAKTF 513 Query: 459 KSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALMRELGASDEADLQRQ 518 S D + L ++ EA+ L A D++M L Q Sbjct: 514 ASKIFDTHEFGYRRVTIERPLRLSAQMSDEAIESLRYAERTYDSVMPALYE----KFGEQ 569 Query: 519 LLEEAFG 525 EE +G Sbjct: 570 WTEETYG 576 >UniRef50_A8ZRN8 N-6 DNA methylase n=14 Tax=cellular organisms RepID=A8ZRN8_DEIGD Length = 610 Score = 254 bits (649), Expect = 6e-66, Method: Composition-based stats. Identities = 84/437 (19%), Positives = 157/437 (35%), Gaps = 68/437 (15%) Query: 48 EYLPEGYRWDDL--------------KSRIGQEQLQFYRKMLVHLGEDDKKLVQAVF--- 90 YLP RW + +S ++ + + + + + + L + Sbjct: 165 FYLPPEARWTVISGREPFDWPRDVQGRSTAPRDIGEHLTRAVRAVVKHNPSLSGVIDVVD 224 Query: 91 ---HNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAG 147 P ++ +V + G D G YE LL+K A + AG Sbjct: 225 FAAERNGERDINPAKLRGVVETFSDPRYRLGLADVQPDFLGRAYEYLLRKFAEGSGQSAG 284 Query: 148 QYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQ 207 ++FTP + + H+L+P+P E D A G+AG LI+ + + Sbjct: 285 EFFTPTEVGFLMAHILRPKPGETCHDYACGSAGLLIKLQLVARELDPTS----------R 334 Query: 208 IHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNP 267 + G EL + +A MN ++HD+E L G + +DG ++ + IV NP Sbjct: 335 VPLKLSGQELQAESYAVAQMNAIIHDMEVELARGDTMINPKFRNADG-SIRQHDIVVANP 393 Query: 268 PFGSAAGTNITRTFVH---------PTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEG 318 + + +I + ++QH + ++ GRAAVV+ + G Sbjct: 394 MWNQSFAPDIFAHDPFDRFRTAGGITSGKGDWAWLQHTLACMNDHGRAAVVLDTGAVTRG 453 Query: 319 ------GKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCT 372 K IR+ +++ + ++ LP +FY ++ K A Sbjct: 454 SGSKNEDKERTIRKWFVEQDLIDGVILLPENLFYNTTAAGVIVVLNKRKPAARK------ 507 Query: 373 DDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVY--GEDPHGLSPRTEGEWSFNAEETEVA 430 + + + + + +E L+P +Y GE G E V Sbjct: 508 GKIVLLNASRHFSKGRPKNYLPEEDLRPLAAMYLKGEPVDG--------------ELAVI 553 Query: 431 DSEENKNTDQHLATSRW 447 ++ + D +L+ RW Sbjct: 554 TKQQAEEADYNLSPGRW 570 >UniRef50_C9NJI6 N-6 DNA methylase n=1 Tax=Streptomyces flavogriseus ATCC 33331 RepID=C9NJI6_9ACTO Length = 461 Score = 254 bits (648), Expect = 8e-66, Method: Composition-based stats. Identities = 99/456 (21%), Positives = 176/456 (38%), Gaps = 53/456 (11%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKE--TGQEAEYLPEGYRWDD 58 M + + K D LR G + Q+ L +++FL+ + G + P+ W Sbjct: 1 METTEYSQVVGKALDKLR-GPLDIQDAQQLLLAVIFLRCVSDIPAGGASGDRPQ---WRQ 56 Query: 59 LKS-----RIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSL 113 L E ++ L + + ++ + + ++ +D Sbjct: 57 LAELGSSLAGDHELTWALKQALDAWTSSYLDGGRPMSESIPDHLVAGPLLREVLGLVDR- 115 Query: 114 DWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQD 173 D ++YE L++ +N G YFTPR L++ ++ +L P+ E V D Sbjct: 116 ----------ADRLVELYEECLERFSN--NKKGGNYFTPRHLVRLLVEMLAPRQGEQVFD 163 Query: 174 PAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD 233 PA G+ GFL+E+ RYV+ + +G ++ P R++A MN Sbjct: 164 PACGSGGFLVESARYVQEHGGSSAAVG-----------LVGRDINPRARQVAWMNLTARG 212 Query: 234 IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTN------ITRTFVHPTSN 287 +E +L R N+L +D +V NPPF + R P SN Sbjct: 213 LEADLGS----RPVNSLWADDTPAGAFDVVFVNPPFNLKLARDDLRYDSRWRYGEPPRSN 268 Query: 288 KQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYA 347 ++QH++ L GRAA+++PD F G IRR L+ + ++ LP G+F Sbjct: 269 ANFAWIQHVVSKLTTRGRAAMLLPDGATFTSGAAAGIRRGLVADDLVSAVVALPAGLFPH 328 Query: 348 QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGK-RTPFTDEHLQPFERVYG 406 + + F++ A V D R G+ R ++ ++ Y Sbjct: 329 TSISASAWIFSREKPAE------RRGQVLFVDARKQGNLVGRGRRTLSEGAIESIADTYR 382 Query: 407 EDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHL 442 + S + W +A E+A E N +++ Sbjct: 383 SW-YAESYQDRPGWCRSATVEEIAAQEFNLQAVRYV 417 >UniRef50_Q3J7Q6 N-6 DNA methylase n=7 Tax=Bacteria RepID=Q3J7Q6_NITOC Length = 661 Score = 253 bits (645), Expect = 1e-65, Method: Composition-based stats. Identities = 107/509 (21%), Positives = 182/509 (35%), Gaps = 91/509 (17%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMC--------KETGQEA---EYL 50 N++ A LW + D LR G Y + L+ + Q+A ++ Sbjct: 5 NHSQTAAFLWSIADLLR-GDFKQSQYGRIILPFTLLRRMECVLEPTKDKVVQQATVHQHK 63 Query: 51 PEGYRWDDLKSRIGQEQLQFYR-------------------KMLVHLGEDDKKLVQAV-F 90 P+ R L+ G LQF+ D ++ + F Sbjct: 64 PDHVREMLLRRAAGD--LQFFNASPLTLGTLSDTQTAADLMSYAQSFSTDACEIFEHFEF 121 Query: 91 HNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYF 150 N ++ + +V + D S G ++E L+++ A + AG++F Sbjct: 122 ENFVQQLSSANLLYQVVQRFAATDL--SPARISNFGMGIIFEELIRRFAESSNETAGEHF 179 Query: 151 TPRPLIKTIIHL--------LKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGD 202 TPR ++ L L P + DP AGT GFL E D Y++S + Sbjct: 180 TPRDIVHLTTSLVITGQDDKLAPNRIVTIYDPTAGTGGFLSEGDEYIQSISEK------- 232 Query: 203 TQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLP--KA 260 + + G EL P + + + L+ + I+LGNTL +D P + Sbjct: 233 -----VSVSLHGQELNPESYAICKADMLIKGQD-----VANIKLGNTLSNDQLTGPEHRF 282 Query: 261 HIVATNPPFGSAA--------GTNITRTF-------VHPTSNKQLCFMQHIIETLHP--- 302 + +NPPFG G + + F + S+ L F+ H++ + Sbjct: 283 DFMLSNPPFGVEWKKVQKQITGEHKHKGFNGRFGPGLPRVSDGSLLFLLHLVSKMRDPRD 342 Query: 303 -GGRAAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFT 358 G R +++ + LF GG ++IRR L+ + I+ LPT +FY G+ T V + Sbjct: 343 GGSRIGIILNGSPLFTGGAGSGESEIRRYLLQHDLVEAIVALPTDMFYNTGIATYVWLLS 402 Query: 359 KGTVANPNQDKNCTDDVW-VYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTE 417 A D +R ++ S KR T E + +YG + Sbjct: 403 NHKPAERRGKVQLIDGSQHFAKMRKSLGS--KRQYVTAEQINELVCLYGAFEETPQSKI- 459 Query: 418 GEWSFNAEETEVADSEENKNTDQHLATSR 446 + NA E + + R Sbjct: 460 --FPINAFGYRRITVERPLRLNFQASAER 486 >UniRef50_C6CR27 N-6 DNA methylase n=1 Tax=Dickeya zeae Ech1591 RepID=C6CR27_DICZE Length = 708 Score = 253 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 100/584 (17%), Positives = 188/584 (32%), Gaps = 99/584 (16%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK-------------------- 41 + L +W +C+ LR G Y + L L+ + Sbjct: 5 THRQLANFIWSICNLLR-GPYKRNEYRKVILPLTVLRRFECLLEPTRQDALAEFQWLKTK 63 Query: 42 -ETGQEAEYLP-EGYRWDDLKSR---IGQEQLQFYRKMLVHLGEDDKKLVQAV------- 89 E Q+A GYR+ +L + E + +L + + Sbjct: 64 PERVQQARLQQITGYRFYNLSRMQLTLSGENIHSLLDDPNNLAPNLNSYINGFSANVRAI 123 Query: 90 -----FHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKS 144 F T + E + +V +D + G ++E L++ A ++ Sbjct: 124 MERFKFSEQITHMAEKNILFEVVKAFAKIDL--SPQRVDQMQMGYVFEELIRIGAEQSNE 181 Query: 145 GAGQYFTPRPLIKTIIHLL-KPQPR-------EVVQDPAAGTAGFLIEADRYVKSQTNDL 196 AG++FTPR +IK +++LL P+ + + DPA GT G L A+ Y++ +D Sbjct: 182 EAGEHFTPREVIKLMVNLLLAPEEDLAKSDVVKTIYDPACGTGGMLSVAEEYIRHLNSDA 241 Query: 197 DDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEG-NLDHGGAIRLGNTLGSDGE 255 G + + + L+ + N+ G Sbjct: 242 RPH------------LYGQDWNDEAWAVCKSDMLIKGEDADNIILGDTFTRDGFDRDSDG 289 Query: 256 NLPKAHIVATNPPFGSAAGT---------------NITRTFVHPTSNKQLCFMQHIIETL 300 N + NPPFG ++ L F+QH+I + Sbjct: 290 NKWIFDYMLANPPFGVEWKQQQKYIQKEADELGYAGRFGAGTPRINDGALLFLQHMISKM 349 Query: 301 ----HPGGRAAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTN 353 G R +V + LF G ++IRR +++ L I+ LP +FY G+ T Sbjct: 350 RPVNKDGSRIGIVFNGSPLFTGDAGSGESEIRRWIIENDWLEAIVALPEQLFYNTGIATY 409 Query: 354 VLFFTKGTVANPNQDKNCTDDVWVY-DLRTNMPSFGKR------TPFTDEHLQPFERVYG 406 + T D + + ++ + +R P H+ R+Y Sbjct: 410 IWVITNRKAKERKGKVQLIDARNFWVPMEKSLGNKRRRIGDPQDRPKDPNHIAEITRIYE 469 Query: 407 EDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDIS 466 G + + + +E E+ S+ N D + K + E + Sbjct: 470 NFQDGET----RTFFLDGKEKELVVSKLFDNDDFG-----YHKITVERPLRLNFQATAER 520 Query: 467 WLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALMRELGAS 510 + ++ +L + + ++A +R L A Sbjct: 521 IARLEEQTAFKNLASSNKKNETVRQQEIEAGRARQQEIRNLLAD 564 >UniRef50_B3EIH7 N-6 DNA methylase n=2 Tax=Chlorobium/Pelodictyon group RepID=B3EIH7_CHLL2 Length = 772 Score = 252 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 84/439 (19%), Positives = 142/439 (32%), Gaps = 89/439 (20%) Query: 6 LVAKLWKLCDNLR-DGGVSYQNYVNELASLLFLKMCK---------------------ET 43 L +LW D LR + G+ Q Y + L+FL Sbjct: 16 LEKRLWDAADQLRANSGLKAQEYSAPVLGLIFLLFADVRFAARRAELESAKSSTRRGSRV 75 Query: 44 GQEAEYLPEG-------YRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTT 96 A Y EG R+ L +R E + + E + + V Sbjct: 76 DDPAAYHAEGVLYLSPEARFGYLLNRPEAENIGVMVNEAMRDIEKHNQQLAGVLPKTYYL 135 Query: 97 ITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLI 156 P + L+ + + D FG +YE L + A G G+++TP ++ Sbjct: 136 FDSP-LLKQLLKKVSEI-----PASMDYDAFGRIYEYFLGEFAMSEGQGGGEFYTPVSIV 189 Query: 157 KTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLD------------------- 197 + + +++P + DPA G+ G + + R+V Q Sbjct: 190 RLLTEVIEPYHG-RILDPACGSGGMFVSSARFVAQQKAKTRLTPPSSPALLPEVEGGEEY 248 Query: 198 -------------------DLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNL 238 D+ + D + G+E T RL +N +H +EG + Sbjct: 249 APSSTRSLPKVEGGLSVGHDVTQYSGDPNRELSIHGIEKTDETGRLCRLNLAVHGLEGRI 308 Query: 239 DHGGAIRLGNTLGSDGEN-LPKAHIVATNPPFGS--------AAGTNITRTFV---HPTS 286 HGG + N+ D V NPPF R F T Sbjct: 309 MHGGNV---NSYYDDPHEATGNFDFVLANPPFNVNAVDKERLKDSVGPGRRFPFGLPRTD 365 Query: 287 NKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFY 346 N ++Q L+ GRA V+ ++ +IRR L++ + ++ + +FY Sbjct: 366 NANYLWIQLFYSALNERGRAGFVMANSASDARSSEQEIRRQLVEIRAVDVMVAVGPNMFY 425 Query: 347 AQGVKTNVLFFTKGTVANP 365 + + FF K Sbjct: 426 TVTLPCTLWFFDKAKAKAR 444 >UniRef50_A0Q1H9 Type I restriction-modification system DNA methylase n=6 Tax=cellular organisms RepID=A0Q1H9_CLONN Length = 705 Score = 251 bits (641), Expect = 5e-65, Method: Composition-based stats. Identities = 109/541 (20%), Positives = 188/541 (34%), Gaps = 77/541 (14%) Query: 6 LVAKLWKLCDNLR-DGGVSYQNYVNELASLLFLKMC------------------------ 40 + LW D LR + ++ Y + L+FL+ Sbjct: 7 IERDLWDAADQLRANSKLTAAEYSMPVLGLIFLRYAYNRFLMVKEEIEENLPSRNGKKRP 66 Query: 41 ----KETGQEAEYLPEGYRWDDLKSRIGQEQLQF-YRKMLVHLGEDDKKLVQAVFHNVST 95 + A +LPE R+D L S + + + ++ +KL ++ N Sbjct: 67 ITKEDFESKSAIFLPEIARYDYLVSLTEDADIGKSINNAMKAIEKEYEKLKGSLPTNY-- 124 Query: 96 TITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPL 155 TI + + + L+ +S + N D FG +YE L K A G++FTP L Sbjct: 125 TIFDNELLRELLRKFNSDELRNAK----GDVFGRIYEYFLNKFAMTGAQEGGEFFTPISL 180 Query: 156 IKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGL 215 ++ I+++++P+ +V DPA G+AG ++ +++S +D F G Sbjct: 181 VQMIVNVIEPEQG-IVLDPACGSAGMFVQTGHFIQSHGASAND----------KVTFYGQ 229 Query: 216 ELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFG----- 270 E +LA MN +H +EG + G E L K + V NPPF Sbjct: 230 EKAELNTKLARMNMAVHGLEGKILEGNT-----FYEDKHELLGKCNYVMANPPFNVDGVD 284 Query: 271 -SAAGTNITRTFVHP--------TSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKG 321 T+ F P SN ++Q+ L+ GRA V+ + G Sbjct: 285 SEKIKTDPRLPFGLPGVNKKSKAVSNANYLWIQYFYSYLNEKGRAGFVMASSATDAGHGE 344 Query: 322 TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLR 381 D+R L+ + I+ + FY + + + FF K + D V + D R Sbjct: 345 KDVRERLIKTNDVDVIISIGNNFFYTRSLPCTLWFFDKNKSEDKK------DKVLMIDAR 398 Query: 382 TNMPSFGKR-TPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQ 440 + F++E L+ + + E AE S+ N + Sbjct: 399 NIFRKVNRTINDFSEEQLKNITSI----VWLYRGQNERYLKLVAEYINDYSSKANFINKK 454 Query: 441 HLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSEL 500 + + + S L K+ SL E E E+ Sbjct: 455 AILFEDKLHELIDQLERFNSFKLVADENKEIREEYYTSLKELQKDIDNYFVEKETLNREI 514 Query: 501 D 501 + Sbjct: 515 E 515 >UniRef50_Q31IU5 Type I restriction-modification system, M subunit n=5 Tax=Bacteria RepID=Q31IU5_THICR Length = 709 Score = 251 bits (641), Expect = 5e-65, Method: Composition-based stats. Identities = 109/596 (18%), Positives = 207/596 (34%), Gaps = 108/596 (18%) Query: 6 LVAKLWKLCDNLRDGG-VSYQNYVNELASLLFLKMCKET----------------GQEAE 48 + +LWK D LR G ++ Y + ++FL+ G+ + Sbjct: 10 IEKRLWKSADGLRSGSELASNEYFMPVMGIIFLRHAYSRYLKVKEEIVTTLPSRGGKTRD 69 Query: 49 YLPEGYR------------WDDLKSRIG-QEQLQFYRKMLVHLGEDDKKLVQAVFHNVST 95 E + +D L S ++ + + + + +D L + + Sbjct: 70 LTLEDFSQKGAIFLNAKAQFDYLVSLTDSDDRAEAIIEAMESIEKDYDSLKGQLPKDEYK 129 Query: 96 TITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPL 155 +I + + L+ N++ + D FG +YE L + A + G++FTP + Sbjct: 130 SIPN-EILGTLLRNLNP----DELKKMDGDIFGRIYEYFLTQFAGQGAHDGGEFFTPISI 184 Query: 156 IKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGL 215 ++ I+++++P V DPA G+ G +++ V+S + L F G Sbjct: 185 VQMIVNVIEPDHG-KVFDPACGSGGMFVQSAHLVESMHKNPSQL----------LTFYGH 233 Query: 216 ELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGEN--LPKAHIVATNPPFG--- 270 E T RLA MN +H +EG + G T D V NPPF Sbjct: 234 EKNTTTTRLAKMNLQVHGLEGQIAGGN---EAITYYKDPHEGLWGDTDFVMANPPFNVDE 290 Query: 271 ---SAAGTNITRTFVHP-------TSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGK 320 + F P SN + + L GRA V+ GGK Sbjct: 291 VDADKIKNDRRLVFGLPGVNKNGKVSNGNYLWASYFYSYLSDTGRAGFVMSSQASSAGGK 350 Query: 321 GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDL 380 ++R++L+ H+ ++ + + FY + V + F+ KG + D V + D Sbjct: 351 EAEVRKELVKTGHVDAMIDIRSNFFYTRSVPCQLWFYNKGKP------QEHLDKVLMVDA 404 Query: 381 RTNMPSFGKRTP-FTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEE----- 434 R ++ F+ E LQ ++ + E S+ + ++A++ Sbjct: 405 RNVFRKVTRKIYDFSLEQLQNLTSIFWLYRGQTNRFIELVKSYIQQSLDLANALFKADQE 464 Query: 435 -----------------------NKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDK 471 ++ + +++ +I+ K + D Sbjct: 465 LPGLVEFTANMTAISEAVKPFYLIQDEPYVTQLNEFQEALTLFIKDTKQYEAAVKVANDN 524 Query: 472 DSIDADSLPEPDVLA---------AEAMGELVQALSELDALMRELGASDEADLQRQ 518 ++ L + L AE +LV+ + L L L E +LQ + Sbjct: 525 WDATSNDLSLFNALIEQEGELERLAETSRDLVKQVDLLYKLANRLIEVAEKELQAK 580 >UniRef50_A5IZ14 Modification (Methylase) protein of type Irestriction modification system HsdM n=2 Tax=Mycoplasma agalactiae PG2 RepID=A5IZ14_MYCAP Length = 892 Score = 250 bits (639), Expect = 8e-65, Method: Composition-based stats. Identities = 85/522 (16%), Positives = 175/522 (33%), Gaps = 106/522 (20%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLF---------------------LKM 39 + L +K+W ++LRD + Y + + L+ LK Sbjct: 5 ITKEKLGSKIWAAANHLRD-KLEAYEYKDYVLGLILYKFLCEKQSNYLIKNWVTKEQLKY 63 Query: 40 CKETG-----------------QEAEYLPEG------------------YRWDDLKSRIG 64 + E + W + KS Sbjct: 64 LDSKYLDNISNFSAFYTGNNLESDYEIFKDAKKECIDENGYFIDYSDLFIAWLENKSSFN 123 Query: 65 -QEQLQFYRKMLVHLGEDDKKLVQAVF----HNVSTTITEPKQITALVSNMDSLDWYNGA 119 Q+ Q + + + K L + +F ++S ++ + T ++S++ + + Sbjct: 124 IQDFQQAFNNFNNSINDAHKSLFKDLFVKFERDLSKLGSDTNEQTKVISSLLDIINDIPS 183 Query: 120 HGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREV----VQDPA 175 + D G +YE L+ + A+ AG+++TP + + + ++ ++ V DP Sbjct: 184 TNQDYDVLGYIYEYLIARFASSAGKKAGEFYTPHEVSELMSKIVAHHLKDRKVIKVYDPT 243 Query: 176 AGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI- 234 +G+ L+ + K + + ++ EL L MN ++ +I Sbjct: 244 SGSGSLLLTIGQEFKKYNSGNSPV-----------SYYAQELKAEVFNLTRMNLIMKNIS 292 Query: 235 --EGNLDHGGAIRLGNTLGSDGE----NLPKAHIVATNPPFGSAAGTN-------ITRTF 281 E + +G + + + + V +NPP+ Sbjct: 293 PTEIHARNGDTLEQDWPMFENNDYSSYQHLSVDAVVSNPPYSQKWNAEKHTLDPRYIEYG 352 Query: 282 VHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLP 341 + P + F+ H + + P G +V+P VLF G IR+ L+ K + TI+ LP Sbjct: 353 IAPKTKADYAFLLHDLYHVQPDGIITIVLPHGVLFRGNSEGQIRKTLIQKQQIDTIIGLP 412 Query: 342 TGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPF 401 +FY G+ T ++ K D+ D GK F+ H++ Sbjct: 413 ANMFYGTGIPTIIMILKKHRSE---------KDILFVDASKLYVKEGKNNKFSKSHIKKI 463 Query: 402 ERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLA 443 V + +S E+ ++ N N +++ Sbjct: 464 ADV------VNNRIEIENFSRRVLLDEIVANDYNLNISRYID 499 >UniRef50_A3J6X4 Type I restriction-modification n=1 Tax=Flavobacteria bacterium BAL38 RepID=A3J6X4_9FLAO Length = 578 Score = 250 bits (637), Expect = 1e-64, Method: Composition-based stats. Identities = 97/531 (18%), Positives = 196/531 (36%), Gaps = 87/531 (16%) Query: 1 MNNND---LVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYR-- 55 MNNN+ V +W++ D++ + + + ++ + + E R Sbjct: 1 MNNNNTKVEVGFIWQITDDVLRDAFKKNEIGDVVLPFVVIRRLD---CILDGVNENVRDT 57 Query: 56 WDDLKSRIGQEQLQFY--------------------------------RKMLVHLGEDDK 83 +++ K ++ +++L L ++ + Sbjct: 58 YNNFKDKVAEDKLDPILRKAAGGLKFYNTSRHTLHSLKDDARNIEINFNNYLNGFNQEVR 117 Query: 84 KLVQAV-FHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANET 142 +++ F + + + K + ++ + +D + G ++E L++ + ++ Sbjct: 118 DILENFQFDKIVARLIKNKLLYEMIDAICKIDMH--TEKIDNHGMGYVFEELIRISNEQS 175 Query: 143 KSGAGQYFTPRPLIKTII---------HLLKPQPREVVQDPAAGTAGFLIEADRYVKSQT 193 AG++FTPR +I + L +P + DPA GT G + Y+ Sbjct: 176 NETAGEHFTPRDVIALMNTILFVNEKQELAQPGIIRTIFDPACGTGGMVNLGKNYI---- 231 Query: 194 NDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSD 253 LD L D+++ + G EL + +A L+ E N I+ GN+ D Sbjct: 232 --LDTLLKDSKNKPTIQT-YGQELNEQSYAIAKSEALITGEEAN-----NIKHGNSFSED 283 Query: 254 GENLPKAHIVATNPPFGSAAGTNIT-----------RTF--VHPTSNKQLCFMQHIIETL 300 H + NPP+G + R + + TS+ QL F+QH++ + Sbjct: 284 QFQGKHFHYMMANPPYGVTWKKDQKFIENESLNPAGRFYAGLPRTSDGQLLFLQHMLSKI 343 Query: 301 -HPGGRAAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLF 356 G R VV + LF G +DIR+ +++ L I+ LP +FY G+ T + F Sbjct: 344 EREGSRIGVVTNGSPLFTGDAGSGESDIRKWIIENDWLECIVALPKDMFYNTGINTYIWF 403 Query: 357 FTKGTVANPNQDKNCTDDVWVYDLRTNMPSFG-KRTPFTDEHLQPFERVYGEDPHGLSPR 415 T + V R+N S G KR T EH+ ++Y + + Sbjct: 404 LTNKKEKQRKGKVQLINAVDYC--RSNKKSLGNKRNEITAEHITDILKLYTDFKPTQHSK 461 Query: 416 TEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDIS 466 F + V ++ + L ++ K + +++ ++ Sbjct: 462 IFDNEHFGYFQLTVEQPVYDEKGKKVLDKNKNPK---ADSKKRDKENVPLT 509 >UniRef50_A3DAQ0 N-6 DNA methylase n=1 Tax=Shewanella baltica OS155 RepID=A3DAQ0_SHEB5 Length = 565 Score = 250 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 87/449 (19%), Positives = 158/449 (35%), Gaps = 71/449 (15%) Query: 2 NNNDLVAKLWKLCDNLR-DGGVSYQNYVNELASLLFLKMC-------------------- 40 N + +LWK D LR + ++ Y + L+FL+ Sbjct: 6 NIEAIEKRLWKSADTLRANSELASNEYFLPVMGLIFLRHAYSRYLSVKDEIVTTLPSRGG 65 Query: 41 --------KETGQEAEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHN 92 + + A +L ++D L + + + E D ++ Sbjct: 66 KTRELTKEDFSKKSAIFLKPDAQFDALIALTDADNRAEAIINAMDSIEADYTNLRNQLPK 125 Query: 93 VSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTP 152 + L+ ++ + + D FG +YE L + A++ G++FTP Sbjct: 126 QEYNNIPNDVLGMLLRTLNPEEL----KKATGDIFGRIYEYFLTQFADQGAHDGGEFFTP 181 Query: 153 RPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAF 212 L++ ++++++P + DPA G+ G +++ ++ D +L F Sbjct: 182 VSLVQLLVNVIEPDHG-KIFDPACGSGGMFVQSAHFMARHAQDPHEL-----------TF 229 Query: 213 IGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGEN--LPKAHIVATNPPFG 270 G E T RLA MN +H +EGN++ G + T +D V NPPF Sbjct: 230 YGHEKNRVTTRLAKMNLAVHGLEGNVEGGES---AITYYNDPHEGLFGTVDYVMANPPFN 286 Query: 271 SAA-------GTNITRTFVHP-------TSNKQLCFMQHIIETLHPGGRAAVVVPDNVLF 316 G F P SN ++Q+ L+ GRA V+ Sbjct: 287 VDEVDADKIKGDKHRLPFGLPGVNKNKKVSNGNYLWIQYFYSYLNDTGRAGFVMSSQASS 346 Query: 317 EGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVW 376 G +R L+ + ++ + + FY + V + F K A+ D V Sbjct: 347 AGRDEAKVREQLVKTGDVDIMIDIRSNFFYTRTVPCQLWFLNKNKPAHLK------DKVL 400 Query: 377 VYDLRTNMPSFGKRTP-FTDEHLQPFERV 404 + D R ++ F+ E Q V Sbjct: 401 MLDARNVYRKVTRKIYDFSPEQQQNLTAV 429 >UniRef50_B0VF74 Type I restriction-modification system methyltransferase subunit n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VF74_9BACT Length = 690 Score = 249 bits (635), Expect = 2e-64, Method: Composition-based stats. Identities = 101/568 (17%), Positives = 193/568 (33%), Gaps = 103/568 (18%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK-----ETGQEAEYLPEGYRW 56 N++ + + +W +C+ LR G Y + LK LP Y Sbjct: 4 NHSQIASFIWSICNLLR-GPYKRNEYRKVILPFTVLKRFDCILAPTKDNVLAELPHLYGK 62 Query: 57 DD---LKSRIGQEQLQFYRK---------------------MLVHLGEDDKKLVQAV-FH 91 D +S I + FY K + + +K+++ F Sbjct: 63 SDNIISESLIRITGVPFYNKSRLDMKKLLDDTENIAINLQSYINDFSPNVQKIIEYFAFS 122 Query: 92 NVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFT 151 + + + ++ + + G ++E L++ A ++ AG++FT Sbjct: 123 EQIARLQDANLLYLVLQRFVTDELDLSPQAVDNIQMGLVFEELIRIGAEQSNEEAGEHFT 182 Query: 152 PRPLIKTIIHLL--------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDT 203 PR +IK +++LL K + + DPA GT G L A+ Y+K D Sbjct: 183 PREVIKLMVNLLLSPEADLAKSHVVKTIFDPACGTGGMLTAAETYIKELNRDAKPH---- 238 Query: 204 QDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIV 263 G + + + + L+ + +G + DG + K + Sbjct: 239 --------LYGQDWNKESYAVCCSDMLIKGEVAKIHYGCSFEQ------DGFSTDKFDYM 284 Query: 264 ATNPPFGSAAGT---------------NITRTFVHPTSNKQLCFMQHIIETLHP----GG 304 NPPFG + ++ L F+QH+I + G Sbjct: 285 LANPPFGVEWKKQQKTITDEHEKLGYNGRFGAGLPRINDGSLLFLQHMISKMRSVEEGGS 344 Query: 305 RAAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGT 361 R +V + LF G ++IR+ +++ L I+ +P +FY G+ T + T Sbjct: 345 RIGIVFNGSPLFTGDAGSGESNIRKWIIENDWLEAIIAMPDQLFYNTGISTYIWIITNKK 404 Query: 362 VANPNQDKNCTDDVWVYD-LRTNMPSFGKRTPFTD------EHLQPFERVYGEDPHGLSP 414 A+ D Y+ +R ++ + KR D +H+ R++ + Sbjct: 405 EAHRKGKIQLIDARQFYNKMRKSLGN--KRNIIGDGEDNRFDHISLITRIHSDFIDN--- 459 Query: 415 RTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSI 474 E E++ N S+ N D F + I + L+ + + Sbjct: 460 -QELEFTCNGTTKTAIVSKIFDNKD----------FGYQKITVERPLRLN-FQVSQERIA 507 Query: 475 DADSLPEPDVLAAEAMGELVQALSELDA 502 D+ L + ++ E+DA Sbjct: 508 RLDNNTTFAKLVESKKKDPIEKQREMDA 535 >UniRef50_B0V9R4 Putative uncharacterized protein n=2 Tax=Acinetobacter baumannii RepID=B0V9R4_ACIBY Length = 760 Score = 249 bits (635), Expect = 2e-64, Method: Composition-based stats. Identities = 110/420 (26%), Positives = 182/420 (43%), Gaps = 47/420 (11%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQ-NYVNELASLLFLKMCKETGQEAEYLPEGYRWDDL 59 ++ +L+ KL ++LR G+ ++E A++LFLK+ E W+ L Sbjct: 158 VSRKELINVFKKLNNSLRGEGLRAGIERLSEFANILFLKLYTENANTGI-------WNSL 210 Query: 60 KSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGA 119 KS + +L + D++ +VF N+ +T P + ++ +D L Sbjct: 211 KSLDNDLLINTTNNILQDI---DRQYGASVFTNLQ--LTNPVAVKEMIKELDKLKL---- 261 Query: 120 HGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTA 179 D GD +E LQ+ A T + G+YFTPR + KTI++L+ P+ E + DP GT Sbjct: 262 SSIDTDIKGDAFEYFLQQ-ATATNNDLGEYFTPRHITKTIVNLVNPKYGEKIYDPFCGTG 320 Query: 180 GFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLD 239 GFL EA ++K T ++ + + H G E+ +LA MN +LH D Sbjct: 321 GFLTEAFDHIKDNTLIANNSSEEIK--LKHNTIFGREITSN-AKLAKMNMILHG-----D 372 Query: 240 HGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIET 299 I +TL + E+ + +V TN PF + ++ + H + Sbjct: 373 GHSGICQIDTLQNPIES--EYDVVITNMPFSQKTSYSHLYENKLAKNDGDGVCVLHCFKA 430 Query: 300 LHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQG-VKTNVLFFT 358 GGR A+VVP+ LF+ +R+ L + L ++ LP +F VKTN+L+FT Sbjct: 431 TKKGGRMALVVPEGFLFK-AALAPVRKYLFENAQLKAVVSLPKEVFLPYAKVKTNILYFT 489 Query: 359 KGTVANPNQDKNCTDDVWVYDLRTNMPSFG-----------KRTPFTDEHLQPFERVYGE 407 N D V+ Y++ + S K F D + F++ Y E Sbjct: 490 NCHNGRTNSD------VFYYNVTNDGLSLDSFRRKIDENDLKNLDFADLNKSDFDKYYNE 543 >UniRef50_A1TSH9 N-6 DNA methylase n=4 Tax=cellular organisms RepID=A1TSH9_ACIAC Length = 709 Score = 246 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 99/502 (19%), Positives = 169/502 (33%), Gaps = 99/502 (19%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKET---GQEA---EYLPEGY 54 +N L +W + D LR G Y + L L+ +EA Y P Sbjct: 3 VNFQQLANFIWSVADLLR-GPYRPPQYERVMLPLTVLRRFDAVLAPSKEAVLKRYEPLRA 61 Query: 55 R--------WDDLKSRIGQEQLQFYR---------------------KMLVHLGEDDKKL 85 + ++L G L F+ + E+ +K+ Sbjct: 62 KNIPNIDAILNNLAKDEGGTPLGFHNHSQLDFQKLKGDPDNIGRHLADYIAGFSENVRKI 121 Query: 86 VQAV-FHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKS 144 + F + E ++ +VS +D + G ++E L+++ Sbjct: 122 FERFEFDKEIEKLEESNRLYQVVSQFAEIDLH--PKRVDNITMGLVFEDLIRRFNEAANE 179 Query: 145 GAGQYFTPRPLIKTIIHLL---------KPQPREVVQDPAAGTAGFLIEADRYVKSQTND 195 AG +FTPR +I+ +++LL + + DPA GT G L EA ++++ Sbjct: 180 TAGDHFTPREVIQLMVNLLLEPDTSVLTQAGVIVTICDPACGTGGMLAEAQNWIRAHNE- 238 Query: 196 LDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGE 255 Q G + P + +A + L+ G + LGNTL D Sbjct: 239 -----------QATVKVFGQDYNPRSYAVAASDLLIKG-----HKDGQVVLGNTLTDDPF 282 Query: 256 NLPKAHIVATNPPFGSAAGT-----NITRTF------VHPTSNKQLCFMQHIIETL---- 300 + + NPPFG + F + ++ L F+ +++ Sbjct: 283 PEQRFDYLLANPPFGVDWKAEKKVIDRWPNFRGYSGKLPRINDGALLFLLYMMSKFQEYK 342 Query: 301 -----HPGGRAAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKT 352 PG R AVV + LF GG +DIRR ++++ L I+ LP +FY G+ T Sbjct: 343 PGSRDKPGSRTAVVFNGSPLFTGGAGSGESDIRRWIIERDQLEAIVALPEQMFYNTGIGT 402 Query: 353 NVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPS-----FGKRTPFTDEHLQPFERVYGE 407 + T ++ + + D R KR L R +G Sbjct: 403 FIWVVTNRKASHRKS------KIQLIDARERYTPMKRSLGDKRRYLDQAALDDVTREHGA 456 Query: 408 DPHGLSPRTEGEWSFNAEETEV 429 + R F V Sbjct: 457 LEDSKTSRVFDNADFGYRRITV 478 >UniRef50_B3QZM0 Type I restriction-modification system methyltransferase subunit n=1 Tax=Candidatus Phytoplasma mali AT RepID=B3QZM0_PHYMT Length = 925 Score = 243 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 95/397 (23%), Positives = 176/397 (44%), Gaps = 50/397 (12%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQ-NYVNELASLLFLKMCKETGQEAEYLPEGYRWDDL 59 ++ +L++ K+ + L++ G+S +NE ++LFLK+ E Q + + E Y W++ Sbjct: 140 ISRENLISIFKKINNLLQEVGISAGIQRINEFCNILFLKLFSE--QNIKNINELYLWENF 197 Query: 60 KSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGA 119 K+ L+F++K + + E KK VF + T I + ++ +D L + Sbjct: 198 KNTPDNSLLEFFKKNI--IPEFQKKYSSDVF--IQTEIKNSSVLRKIIQLLDPLKLID-- 251 Query: 120 HGKSRDDFGDMYEGLLQKNANETKSG--AGQYFTPRPLIKTIIHLLKPQPREVVQDPAAG 177 D GD +E + + G+YFTPR ++K + ++ P+ E + DP G Sbjct: 252 --LETDIKGDAFEYFISVYSGGHGQKTDLGEYFTPRHIVKNTVKIVNPKIGETILDPFCG 309 Query: 178 TAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD-IEG 236 T GFLIE +++ Q + D G E+ T RLA MN +L Sbjct: 310 TGGFLIEVFKHIHQQISLDDK---TLLKKLQKETIFGQEI-TSTSRLAKMNMILAGDGHN 365 Query: 237 NLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHI 296 N+ ++++ N K ++ TN PFG + K+ +++ Sbjct: 366 NIIQCDSLKVTN--------KQKYDLIITNIPFG---------------NQKEQLYIETC 402 Query: 297 IETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVL 355 + L GGR A+++PD +L K +R+ L + + I+ +P G+F VKT++L Sbjct: 403 LNFLKKGGRMAIIIPDGIL-SNQKNLFLRKKLYNNFDIK-IISMPMGMFEPYTSVKTSIL 460 Query: 356 FFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTP 392 AN ++ + +Y + ++ S K+ Sbjct: 461 I------ANSKKENQTNSFIKIYKIESDGFSLDKKRK 491 >UniRef50_A6P0G2 Putative uncharacterized protein n=2 Tax=Bacteria RepID=A6P0G2_9BACE Length = 622 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 109/569 (19%), Positives = 186/569 (32%), Gaps = 102/569 (17%) Query: 1 MNNNDLVAKLWKLCDNLRDGG-VSYQNYVNELASLLFLKMCKETGQEAE----------- 48 +N L A+LW+ D LR G ++ Y + L+FL+ + E Sbjct: 2 INIRKLEAELWESADLLRAGSKLTSNQYCMPVLGLIFLRYAYSRFKLVEAEILKDRPMRG 61 Query: 49 -----------------YLPEGYRWDDLKSRIGQ--------------EQLQFYRKMLVH 77 +LP ++ L L + Sbjct: 62 GRVLPVEASDFASRSALFLPREAQYAYLVELPENIPAAGLTNWRGEVMNSLGEVVNNAME 121 Query: 78 LGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQK 137 L E + + V T ++ + + L+ ++ + D G +YE L K Sbjct: 122 LVEQQSEQLSGVLPKDYTMFSD-ELLAELLRIFNN----SALDEVGGDIVGRIYEYFLNK 176 Query: 138 NANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLD 197 A G +FTP+ L+K I+++L+P ++ DPA G+ G ++ +V+ + Sbjct: 177 FAKNIAQDDGVFFTPKSLVKMIVNVLEPTQG-ILLDPACGSGGMFVQTGDFVEHAGMLAN 235 Query: 198 DLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENL 257 + F G E V +L LMN +H + G + G NT D NL Sbjct: 236 NT----------MTFYGQEKVEYNAKLCLMNLAVHGLNGIVKSGD---EANTFYHDAHNL 282 Query: 258 PKA-HIVATNPPFG------SAAGTNITRTFVHPT-------SNKQLCFMQHIIETLHPG 303 V NPPF +A + F P+ N ++ + L+ Sbjct: 283 EGCCDYVMANPPFNVDKVKSESAQSAGRLPFGLPSVNKNKEIGNGNYLWISYFYAYLNEQ 342 Query: 304 GRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVA 363 GRA V+ + GK DIR L+ H+ ++ + FY + + ++ FF KG Sbjct: 343 GRAGFVMASSATDSQGKDKDIREQLVKTGHVAVMVSVGNNFFYTKSLPCSLWFFDKG--- 399 Query: 364 NPNQDKNCTDDVWVYDLRTNMPSFGKR-TPFTDEHLQPF----------ERVYGEDPHGL 412 + + D V D R + ++D L+ Y Sbjct: 400 ---KREELRDKVLFIDARNYYTVVDRTLNEWSDWQLKNLNAIVWLYRGEVDKYQALVKEY 456 Query: 413 SPRTEGEWSFNAEETEVADSEENKNTDQHLAT-SRWR-------KFSREWIRTAKSDSLD 464 + + E +N + + +R KF E + Sbjct: 457 DRALVHHVTLMHANELLPAVHERRNFSEVVTVFEEYRKQQQELAKFDLEKVVRKDKKKTQ 516 Query: 465 ISWLKDKDSIDAD-SLPEPDVLAAEAMGE 492 W + ID S + V E GE Sbjct: 517 ALWDEKLAVIDEAISTAKEAVWLTEKFGE 545 >UniRef50_A8GYC6 Type I restriction-modification system methyltransferase subunit n=22 Tax=Rickettsia RepID=A8GYC6_RICB8 Length = 517 Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats. Identities = 98/396 (24%), Positives = 168/396 (42%), Gaps = 46/396 (11%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQ-NYVNELASLLFLKMCKETGQEAEYLPEGYRWDDL 59 ++ +L++ L + LR G+ +E A++LFLK+ E E W+ + Sbjct: 148 VSREELISVFKNLNNLLRSEGLRAGIERFSEFANILFLKLLSENN-------EKSWWNSI 200 Query: 60 KSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGA 119 K++ + + + + + + K VF +S + + L +D++D + Sbjct: 201 KAQSDDDIIGYINGHV--IEQIKNKYGGDVFTPISLSNSHT-----LRHIIDAIDPLILS 253 Query: 120 HGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTA 179 +D + +E L+K T G+YFTP+ +IK I+ + P+ E V DP G+ Sbjct: 254 STNIKD---NAFEYFLEK-TRSTCDYLGEYFTPKNIIKLTINYVDPKFGETVYDPFCGSG 309 Query: 180 GFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD-IEGNL 238 GFL EA +Y+K N++ + D D + + H G E+ T R+A MN +LH + Sbjct: 310 GFLTEAFKYIKE--NNIINTDEDLKRLR-HNTLYGREI-TTTARIAKMNMILHGDGHSGI 365 Query: 239 DHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVH--------------P 284 ++ + K I+ TN PF + Sbjct: 366 QQINSLENSKYIRPTTNQTLKFDIIVTNMPFSQEITKKTIKNGKTVTENHIAHLYYNGIA 425 Query: 285 TSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGI 344 +N + H ++ L GGR A+VVP+ LF +R+ L+ K L T++ LP G Sbjct: 426 KNNGDAACVFHCLQNLREGGRMALVVPERFLFRRDTAA-VRQFLLSKAKLQTVISLPQGT 484 Query: 345 FYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYD 379 F GVKT++L+FT N W Y+ Sbjct: 485 FLPYTGVKTSILYFTDAH------KPNYQRYYWFYE 514 >UniRef50_UPI00017F5863 N-6 DNA methylase n=1 Tax=Clostridium difficile ATCC 43255 RepID=UPI00017F5863 Length = 675 Score = 241 bits (616), Expect = 4e-62, Method: Composition-based stats. Identities = 95/496 (19%), Positives = 183/496 (36%), Gaps = 91/496 (18%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK------------ETGQEAEY 49 NN + +A LW + ++LR G ++Y + L+ ++ +E ++ Sbjct: 5 NNFNHIAFLWNIAESLR-GTYKEEDYRKVMLPLIVIRRFDCLLDDYDREIVKSVYKEYDF 63 Query: 50 LPEGYRWD----DLKSRIGQEQL-----QFYRKMLVHLGEDDKKLVQAV----------- 89 LPE + + DLK + F K L+ E+ K + Sbjct: 64 LPEEEKDELVIVDLKENHNIDLQFYNVSDFTWKKLLDDSENIKSNFEEYLNGFSNSVKEI 123 Query: 90 -----FHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKS 144 F + + + ++ A++S M +D + + S ++ G +YE +L++ + Sbjct: 124 IGKFKFKDEIAQLDKKDKLYAVLSKMYEVDLH--INSVSNNEMGYIYEEMLRRFTENSA- 180 Query: 145 GAGQYFTPRPLIKTIIHLLKPQPRE---------VVQDPAAGTAGFLIEADRYVKSQTND 195 AG+ +TPR +I+ + +L + D GT G L A+ YV+ Sbjct: 181 -AGEQYTPREVIRLCMEMLFMGKENFLTEEGKVISIADFCCGTGGMLSIAEDYVEKVNPS 239 Query: 196 LDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGE 255 G EL+ + + + ++ + IRLGNTL D Sbjct: 240 AI------------VNVYGQELLDESFAICQADMIMKG-----QNPDNIRLGNTLTQDRF 282 Query: 256 NLPKAHIVATNPPFGSAAG--------------TNITRTFVHPTSNKQLCFMQHIIETL- 300 + K + +NPPFG S+ L F+Q++I + Sbjct: 283 SGEKIRFLISNPPFGVTWKDEEKKVKEEADLGFDGRFGAGTPRVSDGSLLFLQNMISKMY 342 Query: 301 --HPGGRAAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVL 355 G R A++ + LF G ++IR+ +++K L I+ LPT +FY G+ T + Sbjct: 343 DDEEGSRIAIIFNGSPLFTGDAGSGESNIRKWIIEKDLLEGIIALPTDMFYNTGIATYIW 402 Query: 356 FFTKGTVANPNQDKNCTDDVWVYD-LRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSP 414 T + Y +R ++ + KR + E ++ + +Y + Sbjct: 403 VLTNKKEDKRKGKIQLVNASEYYQLMRKSLGN--KRKEISLEQIEEIKEIYERFEESENS 460 Query: 415 RTEGEWSFNAEETEVA 430 + F + + Sbjct: 461 KIFDNEGFGYRKVTIE 476 >UniRef50_Q10WB4 N-6 DNA methylase n=5 Tax=Bacteria RepID=Q10WB4_TRIEI Length = 677 Score = 241 bits (616), Expect = 4e-62, Method: Composition-based stats. Identities = 93/527 (17%), Positives = 178/527 (33%), Gaps = 103/527 (19%) Query: 6 LVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK------------------------ 41 +V+ +W + D++ Y + + + ++ Sbjct: 9 IVSFIWGIADDVLRDIYVRGKYRDVILPMTVIRRLDCLLEPTKAAVLKENNFYENMEISD 68 Query: 42 -----ETGQEAEYLPEGYRWDDLKSR---IGQEQLQFYRKMLVHLGEDDKKLVQAVFHNV 93 E + Y G+ L I + + + ++ E K F N Sbjct: 69 KSGLTEFTKYPFYNTSGFTLKKLLDEPRSIKENLIDYLNGFSDNVQEIINKFK---FRNQ 125 Query: 94 STTITEPKQITALVSNMDSLDWYNGAH------------GKSRDDFGDMYEGLLQKNANE 141 T+ E K++ AL+ D G S G ++E L++K E Sbjct: 126 LETLVEHKRLYALIQKFTDSDINLSPEPRKDKKGKVIQPGLSNLGMGYVFEELIRKFNEE 185 Query: 142 TKSGAGQYFTPRPLIKTIIHLLKPQPRE-------VVQDPAAGTAGFLIEADRYVKSQTN 194 AG++FTPR +IK +++L+ ++ +V D A G+ G L EA+ ++ Sbjct: 186 NNEEAGEHFTPRDIIKLMVNLIFMPVKDQIKNTTYLVYDCACGSGGMLTEAENFLLELAT 245 Query: 195 DLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDG 254 + ++ G E+ P T + + L+ + I+ +TL SDG Sbjct: 246 GMGK--------KVVIHLFGQEVNPETYAICQADMLIK-----VKETDNIKYASTLASDG 292 Query: 255 ENLPKAHIVATNPPFGSAAGTNITR-----------------------TFVHPTSNKQLC 291 + NPP+G + + + + +S+ QL Sbjct: 293 FPDFTFDFMLANPPYGKSWKVDQDKILVGRKKEVKDNRFLVKHQGEELQLIPRSSDGQLL 352 Query: 292 FMQHIIETLHP----GGRAAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGI 344 F+ + + + G R A+V + LF G ++IRR +++ L I+ LP + Sbjct: 353 FLVNKLSKMKDSTKLGSRIAIVHNGSALFTGDAGSGESNIRRWIIENDWLECIVGLPLNM 412 Query: 345 FYAQGVKTNVLFFTKGTVANPNQDKNCTD-DVWVYDLRTNMPSFGKRTPFTDEHLQPFER 403 FY G+ T + + D W LR ++ S K E + Sbjct: 413 FYNTGIATYIWIISNKKSVERRGKVQLIDGREWYGKLRKSLGS--KSCELRGEDIDRITE 470 Query: 404 VYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKF 450 + + + R F + V E + +R ++F Sbjct: 471 EFLDFSESDNSRIFDNEDFGFHKIVV---ERPLRFSFQVTAARVQEF 514 >UniRef50_O30381 N6 adenine methylation (M) subunit homolog n=4 Tax=Mycoplasma pulmonis RepID=O30381_MYCPU Length = 520 Score = 241 bits (615), Expect = 4e-62, Method: Composition-based stats. Identities = 98/548 (17%), Positives = 197/548 (35%), Gaps = 108/548 (19%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQ---------------- 45 N+ +L+A + K+CD LR + Y + + LF K E + Sbjct: 3 NSKELIAVVKKICDQLR-SKMEVTEYRDYVMGFLFFKYLSEQSEKNFEEFKERVDYIKYS 61 Query: 46 --------------------EAEYLPEGYRWDDLKSRIGQ---------EQLQFYRKMLV 76 + +L Y + ++ + Q E + Sbjct: 62 EFDENHEQFKKIKEIIIQNDDDFFLAYKYSFQNVVDMMNQGKNVIPTIEESFNKIESINS 121 Query: 77 HLGEDDKKLVQAVFHNVSTTITE--------PKQITALVSNMDSLDWYNGAHGKSRDDFG 128 L ++ K+ + +F N+ + K I ++ +++L+ D FG Sbjct: 122 ELNDEKKEFFKDLFTNIDFSNKNLGNIDEEKEKTIQLIIEEINTLNL----SMDEVDHFG 177 Query: 129 DMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREV--VQDPAAGTAGFLIEAD 186 + YE LL + A++ AG+++TP + + ++ ++ ++ DPA G+ LI+ Sbjct: 178 NTYEYLLSEFASDAGKKAGEFYTPSKVAELLVKIVSHGKNKINKAYDPACGSGSLLIKLA 237 Query: 187 RYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN-LDHGGAIR 245 V G E+ T LA MN +L + + LD Sbjct: 238 NKVGKYNK-----------------IYGQEVKTATYNLARMNFILRGVPFSKLDLRSGDT 280 Query: 246 LGNTLGSDGENLPKAHIVATNPPFGSAAGT----NITRTFVH-----PTSNKQLCFMQHI 296 L N L + E+ + NPPF + R + P S F+QH+ Sbjct: 281 LINPLHIEEEDS--FDCIVANPPFSQKWNPTQELSKDRRYNPYPSLAPKSYADFAFLQHM 338 Query: 297 IETL-HPGGRAAVVVPDNVLFEGG--KGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTN 353 + + G A V +L DIR+ ++DK ++ TI+ LP +FY G+++ Sbjct: 339 LFHVNKDNGIIASVFSLGILSRISPKAEEDIRKYIIDKNYIDTIIFLPPNLFYNTGIESC 398 Query: 354 VLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPH--- 410 ++ K N + +++ + + K+ +DE++ + E Sbjct: 399 IIVARKNKPTNDKR-------IFMINATKEFQNAKKQNTLSDENINRIFSAWKEKREEEN 451 Query: 411 -----GLSPRTEGEWSFNAEETEVAD-SEENKNTDQHLATSRWRKFSREWIRTAKSDSLD 464 + E+S + ++ + EE+++ D S K + E ++ + Sbjct: 452 FSKYISYEDIVKNEYSLSMRFYDLDNFDEESEDIDIDFVESEIVKINEELLKYENEFKKN 511 Query: 465 ISWLKDKD 472 ++ +K Sbjct: 512 LNEFLNKK 519 >UniRef50_A6EUA8 Type I restriction-modification n=1 Tax=unidentified eubacterium SCB49 RepID=A6EUA8_9BACT Length = 600 Score = 241 bits (615), Expect = 5e-62, Method: Composition-based stats. Identities = 88/523 (16%), Positives = 179/523 (34%), Gaps = 89/523 (17%) Query: 1 MNN-NDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK------------------ 41 MNN + K+W++ + LR G +Y + + L+ Sbjct: 1 MNNFKEKADKIWEVANLLR-GDYKRSDYGKVILPMTVLRRLDCVLAPKKQLVLDTLPKVE 59 Query: 42 ----ETGQE---------AEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQA 88 ET ++ + + +D + + R + +++++ Sbjct: 60 KLEGETAKDKVLNATAGMNFHNRSKFDFDKIIADPN-NVASNLRNYINGFSTSAREIIEY 118 Query: 89 V-FHNVSTTITEPKQ--ITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSG 145 F + + +PK + +V + + + G ++E L+++ A ++ Sbjct: 119 FNFDDQIDRMDDPKADILFRVVKAFQGIKLESMDSME----MGYVFEDLIRRFAEQSNET 174 Query: 146 AGQYFTPRPLIKTIIHLLKPQPRE---------VVQDPAAGTAGFLIEADRYVKSQTNDL 196 AG++FTPR +IK ++++L + E + DPA GT G L +++VK + Sbjct: 175 AGEHFTPREVIKLMVNMLFNEDSEILTKEGIVKTLYDPACGTGGMLSVGEQHVKELNPNA 234 Query: 197 DDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGEN 256 G E+ P + + + L+ + ++ GNT DG Sbjct: 235 ------------ELKVFGQEINPESYAICKSDMLIKG-----QNPSNVKFGNTFTVDGLE 277 Query: 257 LPKAHIVATNPPFGSAAGT---------------NITRTFVHPTSNKQLCFMQHIIETLH 301 + + +NPPFG + ++ L F+QH+I + Sbjct: 278 DEQFDYMLSNPPFGVDWKKAQKIIKAEHENKGMQGRFGAGLPRINDGSLLFLQHMISKMK 337 Query: 302 PGG-RAAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFF 357 P G R A+V + LF G ++IR+ +++ L I+ +P +FY G+ T V Sbjct: 338 PSGTRIAIVFNGSPLFSGSAGSGESEIRKWIIENDWLEAIVAMPDQLFYNTGISTYVWLV 397 Query: 358 TKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTE 417 + D F + + E P + + Sbjct: 398 NNKKEEKRKGKVQLINATGTKDEELIADEKLDVNRFWKKMDKSLGSKRKEIPENGNSKGI 457 Query: 418 GEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKS 460 G F ++ + E + WR + ++ K Sbjct: 458 G---FVSQLYGNFEENEFSKILPNEYFGYWRVTVEQPLKDEKG 497 >UniRef50_B1VGZ7 Type I restriction-modification system, methyltransferase subunit n=2 Tax=Corynebacterium RepID=B1VGZ7_CORU7 Length = 644 Score = 240 bits (613), Expect = 7e-62, Method: Composition-based stats. Identities = 107/577 (18%), Positives = 199/577 (34%), Gaps = 94/577 (16%) Query: 1 MNNNDL-VAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK--------------ETGQ 45 M+ +L + +W D V ++Y + + + L+ + E Q Sbjct: 1 MSTAELNQSAVWNTADKFLRSIVEPEDYGDYILPMTVLRRLECILEPTKGEVLDLVEILQ 60 Query: 46 EAEYLPEGYRWD---------------DL--KSRIGQEQLQFYRKMLVHLGEDDKKLVQA 88 E Y E W+ DL +++ + + + + A Sbjct: 61 EEGYSEEMIDWEVRVRFGLSFYNSSRLDLTRIAQLDDHVYEALMDYVGAFSSSVRDVWDA 120 Query: 89 V-FHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAG 147 F T+ ++ +V + ++D A ++ GD++E ++ K + AG Sbjct: 121 FDFAVKMKTLENASRLWPVVKHFATIDMSLDALPDAQ--MGDLFEHVMYKAFDTKGKAAG 178 Query: 148 QYFTPRPLIKTIIHLLKPQPR---------EVVQDPAAGTAGFLIEADRYVKSQTNDLDD 198 ++TPR I+ ++ +L V DP AGT G L+ A R +K D Sbjct: 179 AFYTPRDAIRLMVDILFASDDVGLTAEGASRTVYDPTAGTGGMLLVAARALKELNPD--- 235 Query: 199 LDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLP 258 I G EL+ + + L+ E AIR G+TL +D Sbjct: 236 ---------IEVVLAGQELMSTGYAIGKADLLIQGGEP-----DAIRHGDTLLTDLYEGE 281 Query: 259 KAHIVATNPPFGSAAGT-------------NITRTFVHPTSNKQLCFMQHIIETLHP--- 302 + + +NPPFG+ + + + Q+ F+ H+ L P Sbjct: 282 QFEYILSNPPFGTDWEVQQQSVKEQAKVPGSRFSHGLPSKDDGQMLFLAHVASKLMPAGP 341 Query: 303 ---GGRAAVVVPDNVLFEGGKGT---DIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLF 356 GGR AVV + LF G + IR L++ + I++LPT +FY G+ T V Sbjct: 342 NGAGGRGAVVSNGSPLFTGAPESGPDKIRAWLLENDLVDAIIQLPTNMFYGTGISTYVWI 401 Query: 357 FTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRT 416 + D + + + KR + + Y + Sbjct: 402 LDTNKEEHRKGFVQLIDASECWSVP-DKGLGEKRREMKEPDRKRVLEEYAAFEDTEISKV 460 Query: 417 EGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDA 476 + +V + L + + + + + L D + Sbjct: 461 LTPADLGFRDVKVTKQ-------KRLRVAVTPEAVAQVLEHKSAVPEHAEVLADVADVKF 513 Query: 477 DSLPEPDVLAAEAMG-ELVQALSELDALMRELGASDE 512 + LPE AA+ G +++ + +DA++ +G DE Sbjct: 514 NDLPEALKAAAKKRGVKMLAGM--IDAVLEAVGVPDE 548 >UniRef50_C2EIH9 Restriction-modification protein n=1 Tax=Lactobacillus salivarius ATCC 11741 RepID=C2EIH9_9LACO Length = 767 Score = 240 bits (613), Expect = 9e-62, Method: Composition-based stats. Identities = 102/445 (22%), Positives = 187/445 (42%), Gaps = 30/445 (6%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQ-NYVNELASLLFLKMCKETGQEAEYL-PEGYRWDDL 59 + +DL+ + LR+ GV+ +E ++LLFLK+ + +E Y + + WD Sbjct: 153 SKSDLINLFRVANNKLREAGVNAGVTRFSEFSNLLFLKLVSDLNEERNYNIKDEFLWDTY 212 Query: 60 KSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGA 119 K+ G + + + + +KK + N T K L +D LD N Sbjct: 213 KTYEGNALINYINNTV--IDGLNKKFDSSEEDNGLFTPLHIKDPIKLKEIVDKLDTLNF- 269 Query: 120 HGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTA 179 D GD +E +QK +T + G+YFTPR +++ + ++KP + + DP GT Sbjct: 270 KKIDTDIKGDAFEYFIQKYN-QTNNDLGEYFTPRHIVRFLNDIVKPTYGDKIYDPFCGTG 328 Query: 180 GFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD-IEGNL 238 G LI A + ++ + LD DT + G E+ T R+A MN +L N+ Sbjct: 329 GMLIVAFERILNELEERGKLDEDTLTNLREQTIWGGEIS-DTARIAKMNMILSGDGHSNI 387 Query: 239 DHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIE 298 + + K +IV +N PF + + + HI++ Sbjct: 388 MQHDSFMNPVS--------DKYNIVISNIPFNMEVTNEQSSLYEPDIKKGNAVAILHILK 439 Query: 299 TLHPG---GRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNV 354 L RAA++VPD VL + D+R++++ L I+ LP+ +F KT++ Sbjct: 440 ALKNNNPYSRAAIIVPDAVLNDKSM-KDLRKNIVSSGQLLGIVSLPSKVFLPYTEAKTSI 498 Query: 355 LFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSF-GKRTPFTD-EHLQPFERVYGEDPHGL 412 L F ++ T++++VY ++ + + +R + L F ++ E Sbjct: 499 LIF-------GSKTNIPTENIFVYKVKNDGYTLTTRRRKISGINDLDNFISIHEEMLETN 551 Query: 413 SPRTEGEWSFNAEETEVADSEENKN 437 + + + E+NK+ Sbjct: 552 YNKKLNYDNLFYISRKDILDEKNKS 576 >UniRef50_B9ACI4 Putative uncharacterized protein n=1 Tax=Methanobrevibacter smithii DSM 2375 RepID=B9ACI4_METSM Length = 541 Score = 240 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 73/367 (19%), Positives = 136/367 (37%), Gaps = 44/367 (11%) Query: 90 FHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQY 149 T++E + LV S + G ++E L+++ + ++ AG++ Sbjct: 1 MEKHINTLSEKNILFKLVRKFSETTVDLSPKAVSNHEMGTIFEELIRRFSEQSNEEAGEH 60 Query: 150 FTPRPLIKTIIHLLKPQPRE------VVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDT 203 FTPR ++K + LL +V DPA GT G L Y+++ D+D Sbjct: 61 FTPRDVVKLMTELLFAGEENESGSIKLVYDPACGTGGMLTSCKEYIQNINPDID------ 114 Query: 204 QDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIV 263 G E+ + + L+ + G +TL +D + K + Sbjct: 115 ------IVLYGQEIQDEIYAICKADMLMKGEKAENIKGP----YSTLSNDKLSGEKFDYM 164 Query: 264 ATNPPFGSAAGTNITR--------------TFVHPTSNKQLCFMQHIIETLHPG--GRAA 307 +NPP+G T+ + S+ QL F+QH+I + R A Sbjct: 165 ISNPPYGRDWETDADEVKSEAEQGYNGRFGAGLPRKSDGQLLFIQHMISKMKTNDKSRIA 224 Query: 308 VVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVAN 364 ++ + LF G ++IR+ + + +L ++ LP +F+ G+ T + T N Sbjct: 225 IITNGSPLFTGDAGSGESNIRKWIFENDYLEALIALPDQLFFNTGIGTYIWILTNKKTPN 284 Query: 365 PNQDKNCTDDVWVY-DLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFN 423 D Y +R N+ + KR ++ + + Y E + F Sbjct: 285 RQGRVQLIDARKEYAGMRKNLGN--KRHTIPEDSITKIIKTYNEFAESDKVKIYNNEDFG 342 Query: 424 AEETEVA 430 + V Sbjct: 343 YTKIIVE 349 >UniRef50_C5VLJ5 N-6 DNA methylase n=1 Tax=Prevotella melaninogenica ATCC 25845 RepID=C5VLJ5_9BACT Length = 642 Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats. Identities = 104/609 (17%), Positives = 198/609 (32%), Gaps = 104/609 (17%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK------------ETGQEAE 48 M +L + +W + + +R G + + L+ E + Sbjct: 1 MTEQELASVIWDIKEIIR-GLYDDAEVEDVILPFTLLRRLDCVLDEKRDAIMEELSKIPT 59 Query: 49 YLPEGYRWDDLKSRIGQEQLQFYR-------KMLVH---LGEDDKKLVQAVFHNVSTTIT 98 PE + L S + + L F+ KML + + + NV + Sbjct: 60 DAPEKMKKIKLDSILRRNNLTFFNVSGLSMEKMLAAPAQIATSFDYYLNSFTDNVRDILA 119 Query: 99 EPKQITALVSNMDSLDWYNG---------------------AHGKSRDDFGDMYEGLLQK 137 ++D D Y S G ++E ++++ Sbjct: 120 NFVHKQDAGDHLDLSDIYRRLAESNKLFSVCQMFVQRADLHPDKMSNAMMGTVFENVIRR 179 Query: 138 NANETKSGAGQYFTPRPLIKTII---------HLLKPQPREVVQDPAAGTAGFLIEADRY 188 + + + AGQ++TPR +++ ++ L P + DP GT G L E Y Sbjct: 180 SKESSNTKAGQFYTPRDIVQLLVALTISGHEDELYIPGRIFSIYDPCCGTGGMLTEGKAY 239 Query: 189 VKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGN 248 ++ ++ D + G EL T + + L+ + N+ + GN Sbjct: 240 LQRLAHNPD----------LKVQLFGQELNDKTYAICKADLLMKGDDHNISQ--QLFKGN 287 Query: 249 TLGSDGENLPKAHIVATNPPFGSAAGTNIT---------------RTFVHPTSNKQLCFM 293 T D + + NPPFG G + + TS+ L F+ Sbjct: 288 TFSEDRLYGRTFNFMLANPPFGVDWGKDEYVKKCVQNDNAPGRRFEAGLPTTSDGSLLFL 347 Query: 294 QHIIETL--HPGGRAAVVVPDNVLFEGGKGT---DIRRDLMDKCHLHTILRLPTGIFYAQ 348 H++ + G R +V+ + LF G G+ +IR+ L+D+ L I+ LP +FY Sbjct: 348 MHMVAKMDQENGSRIGIVLNGSPLFNGDAGSGWSNIRKMLLDRNLLDCIVSLPGDLFYGT 407 Query: 349 GVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMP--------SFGKRTPFTDEHLQP 400 G+ T + V D KR ++E + Sbjct: 408 GISTYLWILDNKRPVEKQ------GKVLFIDASHKHEYAKLLQTNLGKKRYDISEEGAKN 461 Query: 401 FERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKS 460 +Y E E + +++ D R+ R W S Sbjct: 462 ILDIYREYQSVSCDILNEN---TGEVEHLETAKKLDYDDFLYTKVAVRRPMRYWFEGITS 518 Query: 461 DSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALMRELGASDEADLQRQLL 520 + + D +L +V A + + + +E A ++ A + + + Sbjct: 519 KYEQMKAEEGFKPDDKKNLIYKNVAAIDGIDKRRSD-TEFFAFLKSKKCKPSA-AEIKNI 576 Query: 521 EEAFGGVKE 529 +A+G + E Sbjct: 577 RKAWGSMSE 585 >UniRef50_Q58617 Uncharacterized adenine-specific methylase MJ1220 n=7 Tax=Euryarchaeota RepID=Y1220_METJA Length = 578 Score = 238 bits (607), Expect = 4e-61, Method: Composition-based stats. Identities = 99/493 (20%), Positives = 171/493 (34%), Gaps = 87/493 (17%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETG----QEAEYLPEGYRW 56 ++ + L+ L + D +R + +Y L LF K + +E + E Sbjct: 82 VSKDKLIGLLKQGADLIR----TQVDYK-VLLLFLFFKAISDKYLLKVEELKKEFEDLDE 136 Query: 57 DDLKSRIGQEQLQFYR--------------------KMLVHLGEDDKKLVQAVFHNVSTT 96 +D+ +E L+ Y L + E +K+ + + + T Sbjct: 137 EDIYVLANEEILELYDVEGKKLYVWHEVANNPEDFINALNKIVEMNKEKLSGLDELIKRT 196 Query: 97 ---ITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153 + +V ++ +L S D GD YE L A TK+ G+ +TP Sbjct: 197 GLPTLFENENRHIVQHLINLFSRADFSEASYDILGDAYEWTLNYFAP-TKAKEGEVYTPI 255 Query: 154 PLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFI 213 + K I HL++P+ EV+ DPA G+ LIE R+ S N + Sbjct: 256 EVSKLIAHLVEPKDDEVILDPACGSGSMLIEQYRFAGSNPN---------------IVLV 300 Query: 214 GLELVPGTRRLALMNCLLHDI---EGNLDHGGAIRLGNTLG--SDGENLPKAHIVATNPP 268 G E T LA +N +LH I + + G ++ + + KA V NPP Sbjct: 301 GQERNDVTAVLAKLNFILHGINLKDAKVFIGDSLLNPKFESFIXEVKGTGKADKVVANPP 360 Query: 269 FGS-----------AAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFE 317 + +I ++ ++Q I +A +V+ LF Sbjct: 361 WNQDGYDENTLKVNEKYKDIYMYGFPNKNSADWAWVQLINYYTEK--KAGIVLDSGALFR 418 Query: 318 GGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWV 377 GGK IR+ +D + ++ LP +FY +L K + Sbjct: 419 GGKEKTIRKRFVDDDLIEAVVLLPEKLFYNCPAPGIILILNKNKPEERK------GKILF 472 Query: 378 YDLRTN---MPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEE 434 + P K +DE+++ + Y E +V D EE Sbjct: 473 INASNEYIKHPEVKKLNKLSDENIEKIAKAYKEFKD------------VDGFCKVVDIEE 520 Query: 435 NKNTDQHLATSRW 447 + D +L S + Sbjct: 521 IRKNDYNLNVSLY 533 >UniRef50_B0VGE9 Restriction modification system DNA specificity domain:N-6 DNA methylase:Type I restriction-modification system, M subunit n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VGE9_9BACT Length = 837 Score = 238 bits (606), Expect = 6e-61, Method: Composition-based stats. Identities = 112/553 (20%), Positives = 207/553 (37%), Gaps = 90/553 (16%) Query: 8 AKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEY---LPE-------GYRWD 57 K+ D L + V ++ L K + E+ P+ Y W+ Sbjct: 8 KKIDDARDILVGKVPVPSSQVEQITIALIYKFMYDMDNESIELGGKPKYFTGDYAKYAWN 67 Query: 58 DL--KSRIGQEQLQFYRKMLVHLGEDD--KKLVQAVFHNVSTTITEPKQITALVSNMDSL 113 L + G+ ++ Y+ L + + L + +F N +P+ + + +D Sbjct: 68 RLFDQKLSGEGRVMLYQDALTKIPNNASIPTLFRDIFKNAFLPYRDPETLKLFLKCIDEF 127 Query: 114 DWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQD 173 + + GD +E LL ++ AGQ+ TPR +I ++ L+ PQ + + D Sbjct: 128 TYEHSEK------LGDAFEYLLAVLGSQ--GDAGQFRTPRHIIDFMVELIDPQKEDSILD 179 Query: 174 PAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQ-------------------------- 207 PA GTAGFLI A +++ + D D F Sbjct: 180 PACGTAGFLISAYKHIIKTNSSNYDKVNDPHTFAMHNTPLDELVIQNGKKYTGDLLTPDQ 239 Query: 208 ---IHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVA 264 +H+ G ++ RL+L+N LH + I +TL S A+++ Sbjct: 240 RAFLHKNIKGYDIAFEMVRLSLVNMYLHGF-----NTPQIFEYDTLTSTERWNEYANVIL 294 Query: 265 TNPPFGS-AAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLF-EGGKGT 322 NPPF + G F ++ F+ +++E L GRA ++VP+ ++F G Sbjct: 295 ANPPFMTPKGGIRPHHKFTIQAKRSEVLFVDYMLEHLTNNGRAGIIVPEGIIFQSGNAYK 354 Query: 323 DIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLR 381 +R+ L+++ +L ++ LP G+F GVKT++L+ K TD + + Sbjct: 355 QLRKLLVEENYLVGVISLPAGVFNPYSGVKTSILWIDKALA-------KKTDKIIFLKIN 407 Query: 382 TNMPSFG-KRTPFTDEHL-QPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTD 439 + G +R P L F+ LS N E EN D Sbjct: 408 NDGFDLGAQRRPIEANDLPAAFDNAMAYKESVLSGEEYIASDKNVSLVEKTRLAEN--GD 465 Query: 440 QHLATSRW-----RKFSREWIR---------------TAKSDSLDISWLKDKDSIDADSL 479 +L+ R+ ++ + +R + +++ D D +L Sbjct: 466 FNLSWERYISSTSNSYTYDTVRLDEICVKKAQYGSGAAKTDYDGETRYIRITDIDDDGNL 525 Query: 480 PEPDVLAAEAMGE 492 + D+++ + E Sbjct: 526 KDNDIVSPSVINE 538 >UniRef50_C9RQV8 N-6 DNA methylase n=4 Tax=Bacteria RepID=C9RQV8_FIBSS Length = 624 Score = 237 bits (605), Expect = 6e-61, Method: Composition-based stats. Identities = 105/538 (19%), Positives = 181/538 (33%), Gaps = 92/538 (17%) Query: 6 LVAKLWKLCDNLR-DGGVSYQNYVNELASLLFLKMCKETGQEAE---------------- 48 L A LW+ D LR D ++ Y + LLFL+ ++ E Sbjct: 9 LEADLWESADLLRADSKLTSNQYCMPVLGLLFLRYAYGRFKKVEAELLKNRPSRGGRVLP 68 Query: 49 ------------YLPEGYRWDDLKSRIGQ--------------EQLQFYRKMLVHLGEDD 82 +LP+ ++D L + L + L E Sbjct: 69 IEASDFVSKSALFLPKEAQFDYLVNLPANIASAKLKNVHGQPLNSLGEVVNNAMELVEAQ 128 Query: 83 KKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANET 142 + ++ V T + + L+ ++ N D G +YE L K A Sbjct: 129 SEKLKGVLPKTYTDFKD-NLLAELLRTFNN----NALDDVGGDVMGRIYEYFLSKFAKNI 183 Query: 143 KSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGD 202 S G +FTP+ L+K I+++L+P V+ DPA G+ G ++ +V + ++ Sbjct: 184 ASDDGVFFTPKSLVKMIVNVLEPSYG-VLLDPACGSGGMFVQTGDFVNAAGMASNET--- 239 Query: 203 TQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENL-PKAH 261 F G E V +L LMN +H + G + G N+ D NL + Sbjct: 240 -------MTFYGQEKVEYNAQLCLMNMAVHGLTGVVKSGD---EANSFYHDAHNLTGQCD 289 Query: 262 IVATNPPFG------SAAGTNITRTFVHPTSNKQ-------LCFMQHIIETLHPGGRAAV 308 V NPPF + + F P NK ++ + L+ GRA Sbjct: 290 YVMANPPFNVDKVKAESCQSAGRLPFGLPAVNKDKEIGNGNYLWISYFYSYLNEKGRAGF 349 Query: 309 VVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQD 368 V+ + K DIR L+ H+ ++ + FY + + + FF + Sbjct: 350 VMAASATDSQSKDKDIREKLVATGHVDCMISVGNNFFYTKSLPCTLWFFD------KCKK 403 Query: 369 KNCTDDVWVYDLRTNMPSFGKR----TPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNA 424 KN D V D R + + + ++L +Y + E+ Sbjct: 404 KNIKDKVLFIDARNYYTVVDRTLNEWSEWQLKNLNAIVWLYRGELDKYQSLL-AEYRTTL 462 Query: 425 EETEVADSEENKNTDQHLATSRWRKFS-----REWIRTAKSDSLDISWLKDKDSIDAD 477 + N + ++ RE +R S+D + K K + Sbjct: 463 LSYADETDDANLEKILRKTSKIAKQVELLKEYRETLRAEAKASVDAADKKSKKKTQEE 520 >UniRef50_B9M294 N-6 DNA methylase n=2 Tax=Proteobacteria RepID=B9M294_GEOSF Length = 818 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 111/488 (22%), Positives = 192/488 (39%), Gaps = 81/488 (16%) Query: 6 LVAKLWKLCDNLRDGGVSYQ-NYVNELASLLFLKMCKETG--QEAEYLP------EGYRW 56 + K+ +L + G++ V ++ LLFLK ++ ++ LP E +W Sbjct: 6 IKKKVDELWNRFWAAGLTNPLVAVEQITYLLFLKRLEDIDLKRQQRGLPSIYADNETCKW 65 Query: 57 DDLKS----------------RIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEP 100 ++ R + + L + ++ A F ++ Sbjct: 66 GYIRQEKTNPSHLINVVFPWLRELDKHFKPESDEPSELASLNNRMADAYF---QLDPSKG 122 Query: 101 KQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTII 160 K ++ + +D L G ++D GD +E LL + A T GQ+ TPR LI+ ++ Sbjct: 123 KVLSDAIDAVDQLFARAGEGSAAQDIMGDTFEYLLSEVA--TAGKNGQFRTPRHLIRFMV 180 Query: 161 HLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDL-----------------DGDT 203 LL P+P + V DPAAGT GFL +Y+ + + ++L Sbjct: 181 ELLDPEPSQRVIDPAAGTGGFLFSTQQYLMRKYSAQENLVLEWDGTPHRTDGAAATSEQY 240 Query: 204 QDFQIHRAFIGLELVPGTRRLALMNCLLHDI-EGNLDHGGAI--RLGNTLGSDGENLPKA 260 F+GL+ R+ MN +LHD+ + +L G ++ R G + Sbjct: 241 AAIHHGANFVGLDNDRTMARIGWMNLILHDLTDPHLLQGDSLSKRDGKPELARLMESETY 300 Query: 261 HIVATNPPFGSAAGTNITRTFV---------------HPTSNKQLCFMQHIIETLHPGGR 305 V NPPF +N T+ +L F+ +++ L GGR Sbjct: 301 DFVLANPPFTGTVDSNDLEKDSKIFPRAAERGKKKEDAITNKSELLFLWLMLDLLQVGGR 360 Query: 306 AAVVVPDNVLFEG-GKGTDIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVA 363 AV++P+ VLF +RR+L+ + + ++ LP G+F GVKT++L F K T Sbjct: 361 CAVIIPEGVLFGNTDAHVRLRRELLTEHVVEGVISLPGGVFQPYTGVKTSILIFRKETRR 420 Query: 364 NPNQ-----DKNCTDDVWVYDLRTNMPSF--------GKRTPFTDEHLQPFERVYGEDPH 410 + Q T+ VW Y++ + S G+R D L+ F+ Sbjct: 421 DDKQTFTGTTAPRTEYVWFYEVEEDGYSLNAKRNEQPGQRNDLWDA-LEKFKAWLSHGRE 479 Query: 411 GLSPRTEG 418 G + Sbjct: 480 GAQRYEKT 487 >UniRef50_C7QWT4 Type III restriction protein res subunit n=1 Tax=Cyanothece sp. PCC 8802 RepID=C7QWT4_CYAP0 Length = 1005 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 91/384 (23%), Positives = 152/384 (39%), Gaps = 36/384 (9%) Query: 113 LDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQ 172 LD + +++D GD+YE LL K ++ GQ+ TPR +I+ ++ ++ P+P E + Sbjct: 564 LDNQESSDEQNQDVKGDLYEYLLGKLNISGRN--GQFRTPRHIIRLMVEMVDPKPNERIG 621 Query: 173 DPAAGTAGFLIEADRYV--------------KSQTNDLDDLDGDTQDFQIHRAFIGLELV 218 D AAGT GFL+ + +Y+ ++ D L + +F AF + Sbjct: 622 DLAAGTCGFLVNSYQYILEKFTSPEILLDEMGNKHPIGDLLTPEESEFLEKEAFTAYDND 681 Query: 219 P--GTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPF-GSAAGT 275 R+ MN +LH I+ +TL + ++ + NPPF G Sbjct: 682 SGMTMLRIGSMNLMLHGIKY-----PRFFYQDTLSKEFKDEKSLDVALMNPPFKGKMDEK 736 Query: 276 NITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGK-GTDIRRDLMDKCHL 334 +I +L F+ I+ L GGR V+VPD VLF K DIR+ L+++ L Sbjct: 737 DINPYLPTKCKKTELLFLYQILRVLEMGGRCGVIVPDGVLFGSSKQHQDIRQKLIEENRL 796 Query: 335 HTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSF-GKRTP 392 ++ +P+G+F GV T +L FTKG TD +W YD+ + S KR P Sbjct: 797 DGVVSMPSGVFKPYAGVSTAILLFTKGAT---------TDRIWFYDMEHDGFSLDDKRQP 847 Query: 393 FTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSR 452 + + + E+ + + R+ Sbjct: 848 IEENDIPDILDCWRNRFDNGFSALRESMKAELSAKLQPLKEKRLQLQEEIHRLRFEDAIA 907 Query: 453 EWIRTAKSDSLDISWLKDKDSIDA 476 L+ + K + Sbjct: 908 SEDEETPRQVLESAEETLKVLEEE 931 >UniRef50_Q0HVT0 N-6 DNA methylase n=75 Tax=cellular organisms RepID=Q0HVT0_SHESR Length = 829 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 89/493 (18%), Positives = 176/493 (35%), Gaps = 105/493 (21%) Query: 4 NDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKE-------------TGQEAEYL 50 N L++ +W + D+ Y + + ++ L+ Q+ E Sbjct: 7 NKLISFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKEAVLEEVKFQKEEMQ 66 Query: 51 PEGYRWDDLKSRIG----------------------QEQLQFYRKMLVHLGEDDKKLVQA 88 + LK+ G Q L + + L+ ++ K++++ Sbjct: 67 ATELDDEPLKAASGYVFYNTSKWTLKSLFNTATNNQQILLANFEEYLLGFSDNVKEIIEC 126 Query: 89 VFHNVSTTITEPKQITALVSNMDSL--DWYNGAHGKSRD------------DFGDMYEGL 134 N+ + I L+ ++ + N H D G ++E L Sbjct: 127 --FNLKSQIRHMASKQVLLDVVEKFVSPYINLTHETVEDPDGNKMPALTNLGMGYVFEEL 184 Query: 135 LQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPRE------VVQDPAAGTAGFLIEADRY 188 ++K E AG++FTPR +I+ + HL+ ++ V DPA G+ G L E+ + Sbjct: 185 IRKFNEENNEEAGEHFTPREVIELMTHLVFDPVKDQLPLTMTVYDPACGSGGMLTESQNF 244 Query: 189 VKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGN 248 ++ + + + + G E+ T + + ++ ++ I++G+ Sbjct: 245 IEEKYPNDPSVKTKRDVY-----LYGKEINDETYAICKSDMMIKG-----NNPENIKVGS 294 Query: 249 TLGSDGENLPKAHIVATNPPFGSAAGTN----------ITRTF----------------V 282 TL +D + + +NPP+G + + I F Sbjct: 295 TLSTDEFAASRFDFMLSNPPYGKSWASEQKHIKDGSDVIDPRFKVSLKDYWGNLEVVDAT 354 Query: 283 HPTSNKQLCFMQHIIETLHP------GGRAAVVVPDNVLFEGGK---GTDIRRDLMDKCH 333 +S+ QL F+ ++ + G R A V + LF G ++IRR +++ Sbjct: 355 PRSSDGQLLFLMEMVNKMKDPSVSPLGSRIASVHNGSSLFTGDAGGGESNIRRFIIENDM 414 Query: 334 LHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVY-DLRTNMPSFGKRTP 392 L I++LP +FY G+ T + D +Y LR N+ + K Sbjct: 415 LDAIVQLPNNLFYNTGITTYIWVLNNNKPEARKGKVQLIDASLLYRKLRKNLGN--KNCE 472 Query: 393 FTDEHLQPFERVY 405 F EH+ Y Sbjct: 473 FAPEHITEITDTY 485 >UniRef50_Q4KCG2 Type I restriction-modification system, M subunit n=1 Tax=Pseudomonas fluorescens Pf-5 RepID=Q4KCG2_PSEF5 Length = 580 Score = 236 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 120/580 (20%), Positives = 220/580 (37%), Gaps = 70/580 (12%) Query: 5 DLVAKLWKLCDNLRDGGVSYQNYV--NELASLLFLKMCKETGQEAEY----------LPE 52 ++ K L D + G++ YV ++A L+FLK + + +P+ Sbjct: 5 EIKNKAASLWDLVSGAGLASSPYVALEQIACLIFLKRLDDIASADDEEGLPSVFQVLMPD 64 Query: 53 GYR--------WDDL------KSRIGQEQLQFYRKMLVHLGED----DKKLVQAVFHNVS 94 W +L + + + + R + + G + + + + Sbjct: 65 EVHPPNKHHSFWKNLLMHRDPGTYLNDQIFPWLRSLEMRTGNYPSLVKRLGLNGMLSDAY 124 Query: 95 TTIT--EPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTP 152 + + + +T LV +D L Y G + G+++E L + + + G T Sbjct: 125 FQLDPSKSQALTGLVHAIDELFPYPGQKRQEGFSPGEVFEYLFTQGSTSSN--IGPLVTA 182 Query: 153 RPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAF 212 R + + ++ LL P P + + DPAAGT GF++ A +Y+ S+ L + + Sbjct: 183 RHITRFMVALLAPLPGQRIIDPAAGTGGFMVSAQQYMLSRHARLS--AATKKQIHNGHSL 240 Query: 213 IGLELVPGTRRLALMNCLLHDIE-GNLDHGGAIRLGNTLGSDGENLPK-AHIVATNPPFG 270 +G++L R+ +N LLHDIE G ++ G++ G+ G L + V ++ PFG Sbjct: 241 VGIDLSHTLARIGWVNLLLHDIESPQCMQGNSLVTGDSQGAAGRWLKESYDFVLSDLPFG 300 Query: 271 ------SAAGTNITRTF-----VHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLF-EG 318 AAG N + + + +L F+ + L GG AA+++P N+L Sbjct: 301 GRIDPQEAAGANYLPFYARDDQGNRSDKVELLFVWRALNLLQVGGSAALIIPQNLLVGRS 360 Query: 319 GKGTDIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVAN----PNQDKNCTD 373 D+RR+L+ + + ++ LP IF G+K +L K T P+ TD Sbjct: 361 QAQIDLRRELLSRHSVEAVILLPGAIFNPYTGIKAAILVVRKVTDHQALASPHVAPPQTD 420 Query: 374 DVWVYDLRTNMPSFG-KRTPFTDEHLQPFERVYGED------PHGLSPRTEGEWSFNAEE 426 VW Y++ + S KR + + + + AEE Sbjct: 421 AVWFYEVTQDGHSMDHKRKELPADADNDLFDAFVHFRRRQLSAELWERGRDLYFQAGAEE 480 Query: 427 TEVADSEENKNTDQHLATSRW-----RKFSREWIRTAKSDSLDISWLKD--KDSIDADSL 479 S N +W RK S D KD D D + Sbjct: 481 GPYWTSLHNVIERGSTQVKQWLVPVRRKLRGSEALFPDSLDPDCIEAKDWSLDIDDYKVI 540 Query: 480 PEPDVLAAEAMGELVQALSELD-ALMRELGASDEADLQRQ 518 +P +L+ L +L+ ++ +L + + Q Sbjct: 541 EQPKSAGENTALQLIDELEQLELKVIEQLRQLRDEIGEVQ 580 >UniRef50_C0MH51 Putative type I restriction enzyme methylase protein n=1 Tax=Steptococcus equi subsp. zooepidemicus H70 RepID=C0MH51_STRS7 Length = 597 Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats. Identities = 108/555 (19%), Positives = 188/555 (33%), Gaps = 85/555 (15%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKET------------------ 43 N + + +W + D LR G Y + + +K +T Sbjct: 18 NIKEKASLIWSIADILR-GLYKPHEYGKVILPMTVIKRLHDTLLPTRDRVLEVSKTLSNI 76 Query: 44 -------------GQEAEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAV- 89 Y + ++ L S Q FY L E+ + ++ Sbjct: 77 KVAQIRDRKLTDTSGYKFYNTSNFTFNSLLSDPDNIQENFY-AFLNGFSENVRDILDNFE 135 Query: 90 FHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQY 149 F + +T + A++ +S Y GA + D G ++E L+++ + AG + Sbjct: 136 FDEEISKMTNNDALFAVIQEFNSQKAYLGADTVTSTDMGYIFEELVRRFSESYGEDAGAH 195 Query: 150 FTPRPLIKTIIHLL----KPQPR---EVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGD 202 FT R +I + +L KP + + D GT+ L +K+ + D Sbjct: 196 FTSRDIIYLMTDILLIDEKPSDKPIVRTIYDQTMGTSQMLSAMMERIKALDANAD----- 250 Query: 203 TQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHI 262 G EL P T +A + ++ + LG+TL D + Sbjct: 251 -------VTTFGQELNPETYAIAKADTMIRGGNP-----DNMALGSTLSKDAFSGYTFDY 298 Query: 263 VATNPPFGSAAGTN--------------ITRTFVHPTSNKQLCFMQHIIETLHPGGRAAV 308 + +NPPFG + + S+ QL F + I L GR A+ Sbjct: 299 LISNPPFGIDWKKDQKAVKEEAELGEKGRFGAGLPKISDGQLLFQLNGISKLKDTGRMAI 358 Query: 309 VVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANP 365 + + LF G + IR ++ L I++LPT +FY G+ T + TK V Sbjct: 359 IHNGSALFSGNAGGGESAIREYVIMNDWLEAIIQLPTDLFYNTGISTYIWIITKNKVEER 418 Query: 366 NQDKNCTDDVW-VYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGL----SPRTEGEW 420 D R N+ K+ + + YGE + + E + Sbjct: 419 RGKVQLLDASRAFVKRRKNI--GDKKVDIEKAQRELIVQAYGEFANQIYIEGDTAVESKI 476 Query: 421 SFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDS-IDADSL 479 N E D+ R + T+K ++ DI +D D I + L Sbjct: 477 FDNNFFGYRKVVVETPMYDEDGNIVRNKNGKATP-DTSKRNTEDIPLTEDVDEYITREVL 535 Query: 480 P-EPDVLAAEAMGEL 493 P PD ++ ++ Sbjct: 536 PFNPDAWVDDSKTKI 550 >UniRef50_Q5YY36 Putative restriction-modification system endonuclease/methyltransferase n=1 Tax=Nocardia farcinica RepID=Q5YY36_NOCFA Length = 966 Score = 235 bits (599), Expect = 4e-60, Method: Composition-based stats. Identities = 119/524 (22%), Positives = 189/524 (36%), Gaps = 82/524 (15%) Query: 8 AKLWKLCDNLRDGGVSYQ-NYVNELASLLFLKMCK-------ETGQEAE---------YL 50 A+L+ C GG+S V++L+ L++L E G +E + Sbjct: 12 ARLFDAC---WAGGISNPLEVVDQLSHLVYLHELDRAQAGWDERGARSETIEREPIFAHD 68 Query: 51 PEGYRWDDLKSRIGQEQLQFYRKMLVHLGED---DKKLVQAVFHNVSTTITEPKQITALV 107 + RW L Q + + + +V TI P + +V Sbjct: 69 EQHLRWSHLVRLTPQRMFTTIADDVFPWLRNHEFKRLAYSRHVEDVRFTIPTPGLLAKVV 128 Query: 108 SNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQP 167 + N A + D+YE LL K A T G + TP L ++ + P P Sbjct: 129 DVL------NEALSTGDAEAADLYEHLLAKVA--TAGRFGAFRTPLHLTALMVAMTAPGP 180 Query: 168 REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALM 227 + V DP GT G L A +++ + + ++H G + RL+ M Sbjct: 181 DDEVCDPTCGTGGLLTAAAQFMLTSRSGTAQQSKAEVSGRLH----GFDFDRTMLRLSSM 236 Query: 228 NCLLHD-IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTS 286 LH +L H + + G + +V NPPF + + Sbjct: 237 RLALHGYGAADLRHRDNLSV-----EAGTEFERYSVVLANPPFAGSVDYETAAPELLAAV 291 Query: 287 NKQLCFMQH---IIETLHPGGRAAVVVPDNVLFEGGKG-TDIRRDLMDKCHLHTILRLPT 342 + + H I+ L PGGRAAV+VPD +LF ++RR L+++ L +++LP+ Sbjct: 292 RTKKSEILHPIAILRLLKPGGRAAVIVPDGLLFGSTAAHAELRRILVEEHGLEAVVKLPS 351 Query: 343 GIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSF-GKRTPFTDE---- 396 G F GV T +LFFTK TD VW YDL+ + S +R P E Sbjct: 352 GTFKPYAGVSTAILFFTK--------YAGQTDYVWFYDLKADGWSLDDQRAPLLPEDKLG 403 Query: 397 ---------------HLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQH 441 +L R + RT E SF +E+A N + + Sbjct: 404 LTPESLLDTADHTRNNLPDLIRRWRLRNGSERRRTRSEQSFCVTRSEIAAVGYNLSLENF 463 Query: 442 LATSRWRKFSRE--------WIRTAKSDSLDISWLKDKDSIDAD 477 + ++E I T D+ +D D Sbjct: 464 RRIHEMHRVAQEGVRLGDFAQIFTGSVRKSDLDMERDVADTDER 507 >UniRef50_B3ENS7 N-6 DNA methylase n=2 Tax=cellular organisms RepID=B3ENS7_CHLPB Length = 686 Score = 234 bits (597), Expect = 6e-60, Method: Composition-based stats. Identities = 89/491 (18%), Positives = 167/491 (34%), Gaps = 83/491 (16%) Query: 4 NDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK-----------ETGQE------ 46 N++V+ LW + D L +G + + L+ ET Sbjct: 8 NNVVSFLWAIADLL-NGAFKKSEFQKIILPFTVLRRLDYALEKTKAKVLETEHTLKAKGL 66 Query: 47 -------------AEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAV-FHN 92 A Y + ++ L L R+ ++ + +++ A F + Sbjct: 67 ENRHGQLCRAAGYAFYNTSKFNYESLLHDDTNLALN-LRQYVMGFSPNVREIFAAFNFDD 125 Query: 93 VSTTITEPKQITALVSNMDSLDWYN-GAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFT 151 + + L+ + + S + G ++E LL+K G++FT Sbjct: 126 TIRDLGRVNLLYLLMERFNEKSKVDLRPASMSNHEMGYVFEHLLRKFNEALNENPGEHFT 185 Query: 152 PRPLIKTIIHLLKPQPRE---------VVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGD 202 PR I+ ++ L+ E V D GT G L +V Sbjct: 186 PRDAIRLMVDLVLMLDSELAGTEGIPRTVYDCGCGTGGILSITKEHVLQINP-------- 237 Query: 203 TQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHI 262 Q G EL P T +A + L+ +E I+ G+TL D + + + Sbjct: 238 ----QAKVFLYGQELNPFTWAIARADMLI--LEPEGKDAENIKCGSTLSDDQLSDMRFDL 291 Query: 263 VATNPPFGSAAGTNIT--------------RTFVHPTSNKQLCFMQHIIETLHP----GG 304 NPP+G + S+ Q+ F+QH+I ++ Sbjct: 292 QFVNPPYGYEWSKDYDAVTAEAARGFDGRFGAGTPRKSDGQMLFLQHLIARMNDPEESQS 351 Query: 305 RAAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGT 361 +++ + LF GG ++IRR +M+ L I+ +P +FY G+ T + + Sbjct: 352 YIGIILNGSPLFTGGAASGESEIRRWIMENDWLEAIVAMPQQLFYNTGIGTYIWLLSNRK 411 Query: 362 VANPNQD---KNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEG 418 A + + + + + ++ S KR T++H Q + G + Sbjct: 412 PAKHKGKVMLVDASGEEFWSGMSKSLGS--KRREITEDHKQAILNLVKVRKEGPHVKLFD 469 Query: 419 EWSFNAEETEV 429 F E +V Sbjct: 470 TTDFGYREIKV 480 >UniRef50_Q6ZE83 Type I restriction-modification system M subunit n=1 Tax=Synechocystis sp. PCC 6803 RepID=Q6ZE83_SYNY3 Length = 499 Score = 234 bits (596), Expect = 8e-60, Method: Composition-based stats. Identities = 71/332 (21%), Positives = 129/332 (38%), Gaps = 50/332 (15%) Query: 110 MDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPRE 169 M +D G ++E L+++ E AG++FTPR ++K + L+ + Sbjct: 1 MQDIDGNEVLSALDNHSMGTIFEELIRRFNEENNDEAGEHFTPRDVVKLMADLIFLSIGD 60 Query: 170 VV-------QDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTR 222 ++ D A GT G L A+ + + Q ++ G E+ P T Sbjct: 61 LIESGTYLVYDGACGTGGMLTVAEERLAELAQN--------QGKEVSIHLFGQEVQPETY 112 Query: 223 RLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTF- 281 ++ + LL ++ ++ G+TL SD + + +NPP+G + T++ R Sbjct: 113 AISKADLLLKGEGAEAEN---MKYGSTLSSDAFPSQEFDFMLSNPPYGKSWKTDLERLGG 169 Query: 282 ---------------------VHPTSNKQLCFMQHIIETLHP----GGRAAVVVPDNVLF 316 + +S+ QL F+ + + + G R A V + LF Sbjct: 170 KGDIKDPRFVTRHGDEADYKMITRSSDGQLMFLVNKLAKMKHNTRLGSRIAEVHNGSSLF 229 Query: 317 EGGK---GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTD 373 G ++IRR +++ L TI+ LP IFY G+ T + + D Sbjct: 230 TGDAGQGESNIRRWIIENDWLETIIALPENIFYNTGIATYIWLLSNRKNEERRGKVQLID 289 Query: 374 DV-WVYDLRTNMPSFGKRTPFTDEHLQPFERV 404 W LR N+ K ++E +Q + Sbjct: 290 GTEWYVPLRRNLGK--KNCELSEEQIQTIVDL 319 >UniRef50_B2IAD6 N-6 DNA methylase n=19 Tax=cellular organisms RepID=B2IAD6_XYLF2 Length = 793 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 87/523 (16%), Positives = 163/523 (31%), Gaps = 95/523 (18%) Query: 6 LVAKLWKLCDN-LRDGGVSYQNYVNELASLLFLKMCK-----------ETGQ-------- 45 + +W + DN LRD V + Y + + L+ E + Sbjct: 14 ISDFIWNIADNRLRDVYVRGK-YRDVILPFTVLRRLDAVLEATKDAVLERKKFLDAHNVV 72 Query: 46 -----------EAEYLPEGYRWDDLKS-RIGQEQLQFYRKMLVHLGEDDKKLVQAV-FHN 92 +A Y + LK+ GQ + L D ++++ F N Sbjct: 73 EQDGALRMAAGQAFYNVSEFTLAKLKASAAGQRLRDDFIAYLDGFSRDVQEILTKFNFRN 132 Query: 93 VSTTITEPKQITALVSNM------------DSLDWYNGAHGKSRDDFGDMYEGLLQKNAN 140 + + + L+ + D G ++E L+++ Sbjct: 133 QIQKLVDSHVLGYLIEDFLDPEVNLAPLPVKDADGRIKLPALDNHGMGTVFEELIRRFNE 192 Query: 141 ETKSGAGQYFTPRPLIKTIIHLLKPQPREVV-------QDPAAGTAGFLIEADRYVKSQT 193 + AG++FTPR +++ + LL E + D + GT G L A+ + + Sbjct: 193 DNNEEAGEHFTPRDVVQLMAKLLFLPVAERIESSTYSLYDGSCGTGGMLTVAEEALHAL- 251 Query: 194 NDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSD 253 + ++ G E+ T + + LL ++ +TL +D Sbjct: 252 -------AEQHGKEVSIHLFGQEISDETYAICKADLLLKGEGAEAENIVGGADKSTLSAD 304 Query: 254 GENLPKAHIVATNPPFGSAAGTNITR----------------------TFVHPTSNKQLC 291 + +NPP+G + T++ R + +S+ QL Sbjct: 305 QFPSRAFDFMISNPPYGKSWKTDLDRMGGKKGFSDRRFIVSHGGDPEFKLLTRSSDGQLM 364 Query: 292 FMQHIIETLHP----GGRAAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGI 344 F + ++ + G R A+V + LF G ++IRR +++ L I+ LP I Sbjct: 365 FQVNKLQKMKHNTPLGSRIALVHNGSALFTGDAGQGESNIRRWVLENDWLEAIIALPLNI 424 Query: 345 FYAQGVKTNVLFFTKGTVANPNQDKNCTDDV-WVYDLRTNMPSFGKRTPFTDEHLQPFER 403 FY G+ T + D W LR N+ K + Sbjct: 425 FYNTGIATYIWVLANKKAQARRGKVQLIDASQWFQPLRRNLGK--KNCELGAADIARILD 482 Query: 404 VYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSR 446 +Y + E L+ R Sbjct: 483 LYLGQTQ--EAAQSKWFDTQDFGYWKVTIERPLRLKSQLSDER 523 >UniRef50_B0T4G1 N-6 DNA methylase n=2 Tax=Bacteria RepID=B0T4G1_CAUSK Length = 657 Score = 232 bits (591), Expect = 3e-59, Method: Composition-based stats. Identities = 96/486 (19%), Positives = 177/486 (36%), Gaps = 70/486 (14%) Query: 3 NNDLVAKLWKLCDNLRDG--GVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLK 60 ++D + ++ C N G G+ EL L+F K+ E PE + Sbjct: 177 SSDALLFAFRRCHNYIAGNQGLQKPQAFWELLKLIFCKIHDERDS-----PEVEFFASAN 231 Query: 61 SRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAH 120 R G +K + L + K+ A+F +P + +VS + Sbjct: 232 ERTGINGPLKVKKRIDGLFDAVKEDYPAIFQANDVVALKPPVLAYIVSQLQMYSLLES-- 289 Query: 121 GKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAG 180 D G YE ++ + + G++FTPR + + +L P + + DPA GT G Sbjct: 290 --DVDVKGHAYEEIVG---SNLRGDRGEFFTPRNICNMAVSMLDPSEGQTILDPACGTGG 344 Query: 181 FLIEADRYVKSQTN--DLDDLDGDTQDFQIHRA----------FIGLELVPGTRRLALMN 228 FLI A +V + +L+ GD A +GL+ P + MN Sbjct: 345 FLISAMNHVIEKIRVAELEKWKGDYGRADPKIAARISKFAGACIVGLDFNPELVKATKMN 404 Query: 229 CLL-HDIEGNLDHGGAIRLGNTLGS---DGENLPKAHIVATNPPFGSAAGTN---ITRTF 281 ++ +D G L ++ T D + + ++ TNPPFGS + I + Sbjct: 405 MVMNNDGAGGLYQANSLESPATWEEALRDRKLIGSVDLIFTNPPFGSKIPVDDPAILEKY 464 Query: 282 --------------------VHPTSNKQLCFMQHIIETLHPG-GRAAVVVPDNVLFEGGK 320 + + ++ F++ ++ L PG GR A+V+PD +L G Sbjct: 465 DLGHSWSYNEEIDSWTMNESIQKSQPPEILFIERCVKFLKPGTGRVAMVLPDGILGSPGL 524 Query: 321 GTDIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANP----NQDKNCTDDV 375 G +R ++ + + L F V+T+VL + T + +V Sbjct: 525 GY-VREWILKNTWVLASIDLHPDTFQPNVSVQTSVLVLQRKTDEQIALEDAAGRKNDYNV 583 Query: 376 WV-------YDLRTNMPSF--GKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEE 426 ++ +D R N K +E ++ + Y + + + Sbjct: 584 FMAVANHIGHDKRGNKTYVRDRKGNEIVEE-IEEDTKEYIDGQPIYKKQKTQRKVSDDNT 642 Query: 427 TEVADS 432 ++A + Sbjct: 643 LQIAQA 648 >UniRef50_C7P732 N-6 DNA methylase n=1 Tax=Methanocaldococcus fervens AG86 RepID=C7P732_METFA Length = 1068 Score = 230 bits (587), Expect = 9e-59, Method: Composition-based stats. Identities = 90/467 (19%), Positives = 174/467 (37%), Gaps = 45/467 (9%) Query: 1 MNNNDLVAKLWKLCDNLRDGG-VSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDL 59 ++ ++L+ L K+ D + GG ++ +E++ L+F K+ E E YR+ Sbjct: 185 VSRDELIRVLEKVHDTVWQGGKLAPTTAFDEVSKLIFCKIWDEKTTRKG---EYYRFQIG 241 Query: 60 KSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGA 119 + ++ +K + ED KK VF EP+ + ++V + ++ Sbjct: 242 SNESAKDVFDRIKK----IYEDAKKKDPYVF--AEDIKLEPEIVYSVVEQLQEINL---- 291 Query: 120 HGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPRE------VVQD 173 D G +E ++ K GQYFTPR +I ++ E V D Sbjct: 292 KDTDLDTKGVAFERFMEDFF---KGKMGQYFTPREIINFMVEFAMLHFDEDEYLNLKVLD 348 Query: 174 PAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQI--HRAFIGLELVPGTRRLALMNCLL 231 PA G+ GFL+ +++ D Q + G+E+ R+ MN +L Sbjct: 349 PACGSGGFLLHVLDFIRRWAEGNYDKFEAYQHWHEFAKNNIYGIEINEQISRVCKMNMIL 408 Query: 232 HD-IEGNLDHGGAIRLGNTLGSDGENLPK--AHIVATNPPFGSAAGTNITRTFV------ 282 HD N+ A+ + ++ K ++ TNPPFG+ + + Sbjct: 409 HDDGHTNIISFDALEDFEKIEKIHKDFKKGSFDLILTNPPFGAKIKKSERKYIENYELGK 468 Query: 283 -HPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLP 341 + ++ F++ E L GG +V+PD +L +R ++++ + ++ LP Sbjct: 469 GRTSQKTEILFIERCWEFLKEGGILGIVLPDGIL-TNSTLQYVRDFILNRFRVLAVISLP 527 Query: 342 TGIF--YAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQ 399 F Y GVK++++F K + +++ R L Sbjct: 528 NFAFTHYGAGVKSSLVFLQKKK----EGEDLGNYPIFMAIAEHIGYDATGRKD-EKNDLP 582 Query: 400 PFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSR 446 Y E + + + +F + E + + R Sbjct: 583 DILEAYKEFLK--TGKLKKNLNFEGFIVYRNELEGRLDAYYYKDEFR 627 >UniRef50_C7N817 Type I restriction-modification system methyltransferase subunit n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N817_SLAHD Length = 654 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 96/442 (21%), Positives = 174/442 (39%), Gaps = 73/442 (16%) Query: 3 NNDLVAKLWKLCDN--LRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLK 60 ++D + +++ C N + G+ Q EL ++F K+ E P + + Sbjct: 168 SDDNLLFVFRTCHNHIYANDGLQKQQAFFELLKVIFCKIEDERNL---PHPLEF-YATSD 223 Query: 61 SRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAH 120 R ++ +K + + E KK +F + P+ + +VS + N Sbjct: 224 ERGSRDGQLTVQKRVGAIFEKVKKRHGKIFDEDAVIELTPRSLAYIVSELQGYSLLN--- 280 Query: 121 GKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAG 180 + D G YE ++ + GQ+FTPR ++K ++ +L P E V D + GT G Sbjct: 281 -TNIDIKGKAYEEIVG---ANLRGDRGQFFTPRNVMKMVVEMLDPTDEERVADTSCGTGG 336 Query: 181 FLIEADRYVKSQTN-DLDDLDGDTQDFQI--------------HRAFIGLELVPGTRRLA 225 F++ A +V + +L D G +D+ + R F G ++ + Sbjct: 337 FIVMAMTHVMQRIEAELVDEFGPREDWGVDETMAFQERVSDVASRNFFGFDIDRDLAKAT 396 Query: 226 LMNCLL-HDIEGNLDHGGAIRLGNTLGSD------------------GENLPKAHIVATN 266 MN ++ +D GN+ ++ + D ++L ++ TN Sbjct: 397 KMNMVMNNDGSGNIMQTNSLLPPHEWDMDFKSRLAKAIGRDPKSLVNWKSLAMFDVIVTN 456 Query: 267 PPFGSA---AGTNITRTFV-------HPTSNK-------------QLCFMQHIIETLHPG 303 PPFG+ T+I F T+ K ++ F++ + L G Sbjct: 457 PPFGTKIPIKDTSILGQFELAHIWECDKTTGKWTMTDRLQSSVPPEILFVERCTQFLVEG 516 Query: 304 GRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQ-GVKTNVLFFTKGTV 362 GR +V+PD++L G G IR L+ + L + F GV+T+VL K + Sbjct: 517 GRMGIVLPDSILGSPGLGY-IREWLIANHRIVASLDMHQDTFQPHNGVQTSVLILQKKSQ 575 Query: 363 ANPNQDKNCTDDVWVYDLRTNM 384 A + + T V YD+ M Sbjct: 576 AEKDAEAK-TRHVADYDIFMAM 596 >UniRef50_A9NHP1 Type I restriction enzyme, M protein n=9 Tax=cellular organisms RepID=A9NHP1_ACHLI Length = 593 Score = 226 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 85/470 (18%), Positives = 159/470 (33%), Gaps = 81/470 (17%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQE--------------- 46 N + +W + ++L G Y + + LK + +E Sbjct: 13 NIQEKANLIWAIANHL-VGLFKPHEYGKVILPMTVLKRFDDALKETKQEVLSLNKKLNEQ 71 Query: 47 -----------------AEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAV 89 Y + +++L + + L ++ K ++ Sbjct: 72 KTIDAIKDGLICKTTGYDFYNVSPFTFENLLADP-DNIASNFDTYLKGFSDNVKDIISNF 130 Query: 90 -FHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQ 148 F V T+ + + ++ +S + D G ++E L++K + AG Sbjct: 131 KFEQVLETMHKGNVLYVVIQEFNSKKADMHPDKITSMDMGYIFEELIRKFSESYDEQAGA 190 Query: 149 YFTPRPLIKTIIHLLKPQPRE---------VVQDPAAGTAGFLIEADRYVKSQTNDLDDL 199 +FT R +I + LL +E D A GT+ L D +K Sbjct: 191 HFTSRDIIYLMAELLVANEKEHIKQNGVVKTAYDMAMGTSQMLGCLDEKMKE-------- 242 Query: 200 DGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPK 259 +F + G E P T +A + L+ ++ G+TL D + + Sbjct: 243 ----INFDSKLSLFGQEFNPETYAIAKADMLIKGGNAQ-----NMKFGDTLSDDQFSNYE 293 Query: 260 AHIVATNPPFGSAAG---------------TNITRTFVHPTSNKQLCFMQHIIETLHPG- 303 + +NPPFG + S+ Q+ F+ + ++ L G Sbjct: 294 FDYIISNPPFGIDWKLEEKQVKQEYAKLGYDGRFGPGLPAISDGQMLFLLNGVKKLKEGS 353 Query: 304 GRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 360 GR A++ + LF G G ++IR+ L++ L I++LPT +FY G+ T V +K Sbjct: 354 GRMAIIQNGSSLFTGDAGSGPSEIRKYLIESDLLEAIIQLPTDLFYNTGISTYVWIVSKN 413 Query: 361 TVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPH 410 D Y ++ KR D + + Y + Sbjct: 414 KNKERLGKIQLIDASNCY-VKRRKNIGKKRVDLDDTSIDLITKAYLDFKE 462 >UniRef50_Q4HS21 Type I restriction-modification system, M subunit, putative n=3 Tax=Campylobacterales RepID=Q4HS21_CAMUP Length = 695 Score = 224 bits (572), Expect = 4e-57, Method: Composition-based stats. Identities = 100/498 (20%), Positives = 192/498 (38%), Gaps = 60/498 (12%) Query: 1 MNNNDLVAKLWKLCDNLRDGGV-SYQNYVNELASLLFLKMCKETGQ-EAEYLPEGYRWDD 58 + +L A L K+ + L +GG + +E + ++F KM E + + +Y E Y + Sbjct: 173 ITPGELEALLKKIHNYLWNGGKRNPAEAFSEFSKIIFTKMMDEKAKTDIKYKLEHYEFQ- 231 Query: 59 LKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNG 118 + E K + L E KK VF N I + +I LV N++ + G Sbjct: 232 ---KNRDEDKFALEKRIKGLYEKYKKKDSNVFDNA--LILDADEIKFLVENLEGI----G 282 Query: 119 AHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGT 178 D G++++ L+ K AGQ+FTP +++ ++ ++V DP+ G+ Sbjct: 283 LSKIELDIKGEIFQNFLKDFF---KGKAGQFFTPFNVVRFVVGCFDITQNDLVLDPSCGS 339 Query: 179 AGFLIEADRYVKSQTNDLDDLDGDT-QDFQIHRAFIGLELVPGTRRLALMNCLLH-DIEG 236 GFL++ +Y++ ++ L + G+E+ G + A MN ++H D Sbjct: 340 GGFLLQTLQYMQEKSKKLKKKAQKRFWHSFAEKNLYGIEINGGISQTAKMNMIIHDDGHT 399 Query: 237 NLDHGGAI--RLGNTLGSDGENLPKAHIVATNPPFGSA--AGTNITRTFVHPTS------ 286 N+ + ++ H + TNPPFGS+ A F S Sbjct: 400 NVITADGLDSFENFIRKNNKFQKNTFHFIFTNPPFGSSIPASKPYFEDFSFAKSEVHFID 459 Query: 287 --------------NKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKC 332 ++ F++ E L GG A V+PD +L ++R L+++ Sbjct: 460 KIIDKKSPKDLSGQKSEILFLERYFEFLKEGGIVACVLPDGIL-TNSSLQNVRDYLLERF 518 Query: 333 HLHTILRLPTGIF--YAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKR 390 +L LP F Y GVK+++L K + + + + Sbjct: 519 YLLASFSLPQHTFSNYGAGVKSSILVLKKKDKKAIKAFLDKKEAI--------------Q 564 Query: 391 TPFTDEHLQPFERVYGEDPHGLSP-RTEGEWSFNAEETEVADSEENKNTDQHLATSRWRK 449 T +H + E ++P + E + ++ ++ E+ + +A +R Sbjct: 565 NAITQKHKDEILTLRDELKALITPLQKELKALEKMQDKDLKTQEQIATLKEQIANAR-ET 623 Query: 450 FSREWIRTAKSDSLDISW 467 + + ++S Sbjct: 624 YRYKEELVRDKICAEVSE 641 >UniRef50_C3QS31 Type I restriction-modification system n=2 Tax=Bacteroides RepID=C3QS31_9BACE Length = 490 Score = 224 bits (572), Expect = 5e-57, Method: Composition-based stats. Identities = 93/479 (19%), Positives = 158/479 (32%), Gaps = 69/479 (14%) Query: 12 KLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLP-------------EGYRWDD 58 + G +S + + +LLFLK E + E +D Sbjct: 10 SKARQILGGTISADQCRDYVLALLFLKSASEYYKSNNSFQQDDNSPALRLLVSERSSFDY 69 Query: 59 LKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPK----------QITALVS 108 L + +L M ++ E LV + E ++ L+ Sbjct: 70 LCKELDSPELGRLINMALYELEQVNALVTEGYEINKAIDFESNILGDMNARSIKLRELLL 129 Query: 109 NMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLK-PQP 167 + N D GD+Y LL A E TP ++ I L+ + Sbjct: 130 LFQEIRLTNATGQLI--DVGDLYNQLLYIFAEEAGKKINNVLTPTEVVSLITKLIDGDRK 187 Query: 168 REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALM 227 + DPA+G+ L+E + + + + G E+ L M Sbjct: 188 NACLCDPASGSGTLLVEVGKKMGIRGTE----------------LYGQEVNWNLYALTKM 231 Query: 228 NCLLHDIEGN-LDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAG--------TNIT 278 N +L+ +G G ++ L D L K IV + PPF Sbjct: 232 NLMLNGFKGATFLWGDSLSNPKLL--DHGGLRKFDIVVSVPPFADKWAAEEAYSDFYKRF 289 Query: 279 RTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTIL 338 + + P S ++ HI+ +L G+A VVVP VLF + IR +++ L ++ Sbjct: 290 KYGIPPKSQVTWAYISHILASLRNDGQAVVVVPVGVLFR-NTESKIREQIIEHNLLEAVI 348 Query: 339 RLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHL 398 LP +FY + T +L F K + D R S +D+ L Sbjct: 349 ELPPNLFYGAAISTAILVFRK---------ERMRTQTLFVDARKGYISNKGLCKLSDKML 399 Query: 399 QPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRW--RKFSREWI 455 + Y + G E + +A +E ++ L ++ K R+ I Sbjct: 400 EQLSNTYKKFLAGEEMGREKK----GCSFYIATQDEIRHNKYDLKVIKYVEDKIERKEI 454 >UniRef50_C8P6G6 Type I restriction-modification n=2 Tax=Bacteria RepID=C8P6G6_9LACO Length = 699 Score = 224 bits (572), Expect = 5e-57, Method: Composition-based stats. Identities = 95/486 (19%), Positives = 171/486 (35%), Gaps = 79/486 (16%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLK 60 ++ +W + + LR G Y + + + ++ E E +++ + Sbjct: 13 VDITSEANFIWSIANKLR-GTYMPDKYGDVIIPMTIIRRF-ECALEPTKDKVLAQYEAMP 70 Query: 61 SRIGQEQ-----LQFYRKMLVHLGE------DDKKLVQAVFHNVSTTITEPKQITALVSN 109 + + QFY L E + ++ S + E + + SN Sbjct: 71 TYPARAMYKISGFQFYNTSKFDLQELCNDPDNINSNFKSYLAGFSADVQEILRNLDIESN 130 Query: 110 MDSLD----WYNGAHGKSRDD----------FGDMYEGLLQKNANETKSGAGQYFTPRPL 155 +D +D YN S D G ++E L+ + AGQ++T R + Sbjct: 131 IDKMDKGGCLYNVVKAFSELDLSVAKFDSIKMGYIFENLIARFYQNV--DAGQFYTGRDI 188 Query: 156 IKTII---------HLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDF 206 I+ + +L+ V D A GT G L A Y+K +D Sbjct: 189 IRLCVSLLLAEGSEDILEDNKVVTVLDQACGTGGMLSTAYTYLKHLNPTVD--------- 239 Query: 207 QIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATN 266 G EL+ + + L L+ D + + +TL D K V N Sbjct: 240 ---VHLFGQELMGQSYAVGLAEMLIKD-----QNIDNFKHADTLKEDCFPDQKMRFVLEN 291 Query: 267 PPFGSAAGTNITRTF--------------------VHPTSNKQLCFMQHIIETLHPGGRA 306 PPFG+ G + + T++ QL F+Q + L GRA Sbjct: 292 PPFGTPWGGKDAKQGQEESVKEEYLKGESSRWPAGLPKTNDAQLLFIQSALSKLDDNGRA 351 Query: 307 AVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVA 363 A++ + LF G + +RR L++ +L TI+ +PT +FY + T + +K Sbjct: 352 AIIENGSSLFTGNTASGESQVRRWLLENDYLDTIVAMPTDLFYNTELATYIWILSKNKSQ 411 Query: 364 NPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFN 423 D +Y+ + P K+ F+ E+ + ++Y + + F Sbjct: 412 KRKGKVQFIDATNIYE-KLRKPLGKKKNEFSKENREQITKLYTDFVENDISQIHDNTEFI 470 Query: 424 AEETEV 429 E V Sbjct: 471 YREYTV 476 >UniRef50_C0XNK7 Type I restriction-modification system, methyltransferase subunit n=1 Tax=Corynebacterium lipophiloflavum DSM 44291 RepID=C0XNK7_9CORY Length = 667 Score = 224 bits (571), Expect = 6e-57, Method: Composition-based stats. Identities = 107/578 (18%), Positives = 199/578 (34%), Gaps = 98/578 (16%) Query: 4 NDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKET-------------------- 43 N L A +W+ D+ V +NY + + L+ + Sbjct: 20 NRLNAAIWQTADDYLRLIVPAENYGDYIIPFTVLRRLEGRLESTKKDVLDLVHRENVKGT 79 Query: 44 ------------GQEAEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAV-F 90 + + + L + ++ L + ++ A F Sbjct: 80 DPAIVALKIESMFKLRFWNTSELSLERLAT-SDDALKPGLKQYLNTFSPNILEIWDAFEF 138 Query: 91 HNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYF 150 + + Q+ +V++ S+D GD++E L+ ++ AG+++ Sbjct: 139 DKLIDFLDRNNQLWNVVNHFASIDM--SDEALQDQTMGDIFENLMYRSFARKAKDAGEFY 196 Query: 151 TPRPLIKTIIHLLKPQPR---------EVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDG 201 TPR I+ + +L V DP AGT G LI A +++ Sbjct: 197 TPRDAIRLMTSILFTSDDTELEEDGIIRSVYDPTAGTCGMLIAARDALRAINPG------ 250 Query: 202 DTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAH 261 I G EL + + + L+ + ++ GN+L +D Sbjct: 251 ------IEVVVAGQELKESSFAMGKSDLLMQGFK----DPEVLKFGNSLTNDQYANDTFD 300 Query: 262 IVATNPPFGSAA-------------GTNITRTFVHPTSNKQLCFMQHIIETLHP------ 302 + NPP+GS+ G + S+ Q+ F+ HI L P Sbjct: 301 YIMANPPYGSSWKAFQNEVKALQEGGDPRFSEGLPAVSDGQMLFLMHIAHKLAPASGDTK 360 Query: 303 GGRAAVVVPDNVLFEGGKGT---DIRRDLM----DKCHLHTILRLPTGIFYAQGVKTNVL 355 GGRAAVV + LF G + IR+ L+ L I+ LP +FY G+ T + Sbjct: 361 GGRAAVVTNGSPLFTGDAESGPDSIRKYLIGAQGGTEVLDAIIALPNDMFYNTGIATYIW 420 Query: 356 FFTKGTVANPNQDKNCTDDVWVY-DLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSP 414 + D + +R NM KR FT+++++ ++Y + Sbjct: 421 ILDQNKEPRRRGRIQFIDATEICAPMRKNMGQ--KRVEFTEDNIREITKIYKDFEE---- 474 Query: 415 RTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSI 474 TE A++ D K ++ + ++A + ++ +++ Sbjct: 475 -TERSIIVTADDLTYRDVPMFKVAHYAVSVTDETVAQALSHKSAFPEHEEV--IREMKGR 531 Query: 475 DADSLPEPDVLAAEAMGELVQALSELDALMRELGASDE 512 D + LP+ +A+A G + L +M L DE Sbjct: 532 DYNDLPKALKASAKAHG-VKTGAPLLKHIMAALAVEDE 568 >UniRef50_Q7X0F3 M.AhdI n=1 Tax=Aeromonas hydrophila RepID=Q7X0F3_AERHY Length = 532 Score = 224 bits (571), Expect = 7e-57, Method: Composition-based stats. Identities = 95/427 (22%), Positives = 164/427 (38%), Gaps = 33/427 (7%) Query: 3 NNDLVAKLWKLCDNLRD-GGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLKS 61 N + L+ + RD G+ + E+ L++ K+ E E + Sbjct: 122 TNRVENLLFDIHSAFRDIDGLHAPEALEEICKLVYAKLFDE---ENAIRTGEVLFQRSGR 178 Query: 62 RIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQI-----TALVSNMDSLDWY 116 +E R++ DDK + + + K+ A+V + L Y Sbjct: 179 WSVEECAAEIRRLYDLAINDDKAIFSNKIPSYDRSRGVFKETLLLSSAAIVRATEILQHY 238 Query: 117 NGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAA 176 + D G ++ +L +SG GQYFTP+ +I II ++ P RE+V DP Sbjct: 239 D-ISSSPVDIKGRAFQNVL---LPAVRSGMGQYFTPKEVIDFIICMMSPNVRELVVDPFC 294 Query: 177 GTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEG 236 G+ FL A YV++ D L + ++H G+E R+A+ + LH +G Sbjct: 295 GSGHFLTSALDYVRNSHGKADKLFHEFAFTRLH----GIEKSDRMVRIAMTDMRLHG-DG 349 Query: 237 NLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVH--------PTSNK 288 + + L +V TNPPFG + F + Sbjct: 350 HSNIRCTDALLPFDNYPDLYRETFDLVVTNPPFGVDLPADALHQFGPFELALDRKTAISL 409 Query: 289 QLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQ 348 ++ ++ ++ L PGGR A+V+PD VL +R L++ + I+ LP F Sbjct: 410 EIVALERCLQLLKPGGRMAIVIPDGVLSNKNT-QYVRDWLVEHAVIRAIVSLPIETFSPF 468 Query: 349 G--VKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYG 406 G +KT+VL K PN+D + V++ ++ R P + L + Sbjct: 469 GANIKTSVLVLRK---LRPNEDISKLRKVFMSEISNVGYDASGR-PCSSSDLDELLSEFR 524 Query: 407 EDPHGLS 413 + Sbjct: 525 DFVAKEE 531 >UniRef50_A6EJ97 Type I restriction-modification system methyltransferase subunit n=1 Tax=Pedobacter sp. BAL39 RepID=A6EJ97_9SPHI Length = 633 Score = 224 bits (571), Expect = 7e-57, Method: Composition-based stats. Identities = 90/469 (19%), Positives = 159/469 (33%), Gaps = 68/469 (14%) Query: 27 YVNELAS-LLFLKMCKETGQEAEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKL 85 Y E+ +L K+ K TGQ+ Y + ++ LK + + +++ Sbjct: 29 YKGEIPPSILSSKLEKITGQK-FYNTSPFTFEKLKGAPDSIAQDLVS-YINGFSPNVRRI 86 Query: 86 VQAV-FHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKS 144 + F + + + +VS ++ + S D G ++E L+++ Sbjct: 87 FEYFDFEKEIFAMNDANILYLIVSEFAKVNLHPSL--VSNRDMGLIFENLIRRFNELANE 144 Query: 145 GAGQYFTPRPLIKTIIHLLKPQPRE---------VVQDPAAGTAGFLIEADRYVKSQTND 195 AG +FTPR +IK +++LL + + DP GT G L EA Y+K +D Sbjct: 145 TAGDHFTPREIIKLMVNLLFVDDDKFLRDKYHLRKILDPTCGTGGMLSEAKNYLKQNNSD 204 Query: 196 LDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDH-----GGAIRLGNTL 250 + L G E A + L+ + G I+ G+TL Sbjct: 205 IILLT------------YGQEYNKRAYATAASDLLIKGRSSDKVGKYEQAEGEIKFGDTL 252 Query: 251 GSDGENLPKAHIVATNPPFGSAAGT----------NITRTFVHPTSNKQLCFMQHIIETL 300 D + NPPFG + ++ L F+QH+I Sbjct: 253 TEDQFEDDTFDYLIANPPFGVDWKKQKPQIDRDKTGRFEAGLPRVNDGALLFLQHMISKF 312 Query: 301 HP--------GGRAAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGIFYAQG 349 P G R A+V + +F GG +DIR+ +++ L I+ LP +FY G Sbjct: 313 EPYEPKNKKFGSRLAIVFSGSPMFSGGAGSGESDIRKWIIENDWLEGIIALPEQMFYNTG 372 Query: 350 VKTNVLFFTKGTVANPNQDKNCTD-DVWVYDLRTNMPSFGKR-----------TPFTDEH 397 + T + T N D + +R + S ++ Sbjct: 373 INTYIWVLTNRKSKNRKGKIQLFDAREFYIQMRKSQGSKRRKIGEGEVDDGIIHVMEPNQ 432 Query: 398 LQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSR 446 + YG+ + + + F E + R Sbjct: 433 IAEIITEYGQFDNTTNAKLFDNEDFGFTR---VTVERPLRLKYQMTAER 478 >UniRef50_A4P099 Putative type I restriction-modification system, methyltransferase subunit n=1 Tax=Haemophilus influenzae 22.4-21 RepID=A4P099_HAEIN Length = 658 Score = 224 bits (571), Expect = 7e-57, Method: Composition-based stats. Identities = 73/373 (19%), Positives = 135/373 (36%), Gaps = 56/373 (15%) Query: 127 FGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPRE------VVQDPAAGTAG 180 G ++E L++K E AG++FTPR +I+ + HL+ + + DPA G+ G Sbjct: 42 MGYVFEELIRKFNEENNEEAGEHFTPREVIELMTHLVFDPLKSQIPAIITIYDPACGSGG 101 Query: 181 FLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDH 240 L E+ +++ + + + G E T + + ++ D+ Sbjct: 102 MLTESQNFIEQKYPLSESQG------ERSIFLFGKETNDETYAICKSDMMIKG-----DN 150 Query: 241 GGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTN----------ITRTF--------- 281 I++G+TL +D + +NPP+G + + I F Sbjct: 151 PENIKVGSTLATDSFQGNHFDFMLSNPPYGKSWSKDQAYIKDGNEVIDSRFKVTLPDYWG 210 Query: 282 -------VHPTSNKQLCFMQHIIETLHP------GGRAAVVVPDNVLFEGGK---GTDIR 325 +S+ QL F+ ++ + G R A V + LF G ++IR Sbjct: 211 NVETLDATPRSSDGQLLFLMEMVNKMKSPKNNKIGSRVASVHNGSSLFTGDAGSGESNIR 270 Query: 326 RDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDD-VWVYDLRTNM 384 R +++ L I++LP +FY G+ T + + D + LR N+ Sbjct: 271 RHIIENDLLEAIVQLPNNLFYNTGITTYIWLLSNNKSEARKGKVQLIDASLLFRKLRKNL 330 Query: 385 PSFGKRTPFTDEHLQPFERVYGED-PHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLA 443 K F EH+ + Y + ++ E A + Sbjct: 331 --GDKNCEFAPEHIAEITQNYLDFTAKAREIDSQNEEVGLASQIFDNQDFGYYKVTIERP 388 Query: 444 TSRWRKFSREWIR 456 R +F+ E I Sbjct: 389 DRRSAQFTAENIE 401 >UniRef50_UPI0001C41D22 type I restriction-modification system M subunit HsdM n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41D22 Length = 634 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 74/369 (20%), Positives = 139/369 (37%), Gaps = 53/369 (14%) Query: 91 HNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYF 150 N+ T + P +LV+ + Y+ + + GD +E LL K + A ++ Sbjct: 256 ENIVTGLENPNHPNSLVNEGWNDRSYDSYRIQKQYSIGDAFEYLLDKFSLNASKSA-DFY 314 Query: 151 TPRPLIKTIIHLLKPQPR--EVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQI 208 TP + + L+ R + V DP G++ L+E +++V Sbjct: 315 TPNDVSVLVSKLVATNKRAIDSVYDPCCGSSSMLLELNKHVS------------------ 356 Query: 209 HRAFIGLELVPGTRRLALMNCLLHDI---EGNLDHGGAIRLGNTLGSDGENLPKAHIVAT 265 G E+ ++ N +LH+I + ++ G ++ + +G D K +V + Sbjct: 357 LNLICGQEVNAYYYNISRQNMILHNIHFKDFDIKQGDSLDSPHHIGYD-----KFDVVVS 411 Query: 266 NPPFGSAA-------GTNITRTF--VHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLF 316 PF + + + + P + F+QH++ L G V+ P VLF Sbjct: 412 QIPFNVSWTAKKSFLNDQRFKEYNALAPRVKAEYAFIQHMLYHLDDDGIMVVIAPHGVLF 471 Query: 317 EGGKGTDIRRDLMDK-CHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDV 375 IR+ ++ K +L ++ LP+ +FY+ VL F K + DDV Sbjct: 472 RSASEESIRKIIVSKMNYLDAVIGLPSNMFYSTNSPACVLIFKKN--------RRYDDDV 523 Query: 376 WVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEEN 435 D N R E + Y +S ++S E+ ++ N Sbjct: 524 LFIDASKNFNKIKLRNNLRKEDINKIVGTY------VSRAEVDKYSRRVSLREIDENNCN 577 Query: 436 KNTDQHLAT 444 N +++ T Sbjct: 578 LNIPRYVDT 586 >UniRef50_A8YEM4 Genome sequencing data, contig C300 n=4 Tax=Bacteria RepID=A8YEM4_MICAE Length = 1193 Score = 220 bits (560), Expect = 1e-55, Method: Composition-based stats. Identities = 87/419 (20%), Positives = 169/419 (40%), Gaps = 59/419 (14%) Query: 1 MNNNDLVAKLWKLCDNLRDGG-VSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDL 59 + ++L + + +L GG ++ +EL L+F K+ E +A + E Y + Sbjct: 180 VTEDELTRRFKQAHQSLWGGGELNPSEAFDELDKLIFCKIWDEK--KARKVGEPYDFQIF 237 Query: 60 KSRIGQEQL---------QFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNM 110 ++ + + + L E+ ++ VF + P+++ +V + Sbjct: 238 SVAPKADEKEEERKQRENKQLSERIKALYEEGRRADAEVFKDD--IRLSPEKLRTVVGYL 295 Query: 111 DSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREV 170 +S++ D G +E + + GQYFTPR ++K I+ +L Q + Sbjct: 296 ESINL----GETDLDSKGRAFETFMGSFF---RGDFGQYFTPRQIVKFIVDVLPIQHNSL 348 Query: 171 VQDPAAGTAGFLIEADRYVKSQTNDLD-DLDGDTQDFQIHR---------AFIGLELVPG 220 V D + G+ GFL+ A V+++ ++ + + +++ H G+E+ Sbjct: 349 VLDTSCGSGGFLLHALEKVRTEADEYYPNYQTNPKEYNQHYQHWHNFAQSNLFGIEINEQ 408 Query: 221 TRRLALMNCLLH-DIEGNLDHGGAIRLGNTL----GSDGENLPKAHIVATNPPFGS---- 271 R+A MN ++H D N+ +R L + G + + TNPPFGS Sbjct: 409 IARVAKMNMIIHDDGHTNVIAADGLRDSEDLIKRTENKGFTYNRFDFIITNPPFGSVIKQ 468 Query: 272 ----------------AAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVL 315 +RT + + ++ F++ L GG A+VVPD +L Sbjct: 469 TEQAYISQYSFAMKAVDWLNPKSRTTERDSQSTEVLFLEQCHRFLKEGGYLAMVVPDGIL 528 Query: 316 FEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQ--GVKTNVLFFTKGTVANPNQDKNCT 372 +R + +K + ++ +P F A GVK++VLF K + A + Sbjct: 529 -TNSSLQYVREGIEEKYRIVAVVSMPQTAFSATGAGVKSSVLFLKKHSQAVTESIQQAK 586 >UniRef50_A8KXL5 N-6 DNA methylase n=1 Tax=Frankia sp. EAN1pec RepID=A8KXL5_FRASN Length = 775 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 105/531 (19%), Positives = 180/531 (33%), Gaps = 86/531 (16%) Query: 11 WKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLKSRIGQ----E 66 W L D R G V + + L L F A+ RW +L + Sbjct: 107 WALADAYR-GKVGMSDDLMLLTGLAFA-FLHLRFHRAQ------RWTELTAAAADVEPGT 158 Query: 67 QLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGA-HGKSRD 125 ++ L GE + A + ++ +++ L+ +D L+ A G Sbjct: 159 VVRLVESALRASGEAPASI--ADMSALLGDTSDVRRLVPLIQILDRLEPVPDAGSGDVAP 216 Query: 126 DFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEA 185 G + + LL A + TP +++T + L P + V DP FL+ A Sbjct: 217 PAGRIADELLAHAATVGGWRSANVVTPPSVVRTAVRLTDPVAGDRVHDPFCRAGEFLVGA 276 Query: 186 DRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIR 245 +++S+ L G E+ P R LA MN LLH++ +R Sbjct: 277 ADHIRSRGTGSPKL-----------TVSGQEINPSLRWLARMNLLLHNLGAE-----DLR 320 Query: 246 LGNTLGS-DGENLPKAHIVATNPPFGSAAGTN-------ITRTFVHPTSNKQLCFMQHII 297 G L S D + +V NPPF + + R V P N ++QH + Sbjct: 321 AGWALSSPDPQPGGPFEVVLVNPPFNVSGWRDGDQNPDSSWRYGVPPGHNANYAWLQHAL 380 Query: 298 ETLHPGGRAAVVVPDNVLFEGG-KGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLF 356 L GGRA VV+P + + IR ++++ + ++ LP +F + + + Sbjct: 381 ACLAEGGRAVVVMPAGAGSSANLQESAIRAAMVEEGVVDAVVALPPRLFVSTSIPVTLWV 440 Query: 357 FTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGK-RTPFTDEHLQPFERVYGEDPHGLSPR 415 + + DDV D + R+ DE + Y R Sbjct: 441 LRWPSPGH--------DDVLFVDAHGAGRIVERNRSELRDEDVDHIAEAY---------R 483 Query: 416 TEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSID 475 S + D + L+ +R+ + E + Sbjct: 484 NRAARSTGTVLSRPVDRRRIRENGYALSPARYLTATTEPVD------------------- 524 Query: 476 ADSLPEPDVLAAEAMGELVQALSELDALMRELGASDEADLQRQLLEEAFGG 526 + A + +L + L EL R GA + A+ Q + + FG Sbjct: 525 -------PLRARVGIEQLRRDLRELHQ--RAAGAHEHAERQLDEVGDLFGA 566 >UniRef50_B0JQT9 Type I restriction enzyme EcoEI M protein n=1 Tax=Microcystis aeruginosa NIES-843 RepID=B0JQT9_MICAN Length = 588 Score = 219 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 90/420 (21%), Positives = 151/420 (35%), Gaps = 40/420 (9%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLKS 61 N DL + L G+ ++ +EL +L K +E P + L Sbjct: 166 NKGDLEIAFRECRKELAKEGLIAESAFDELTKILTCKFNEEKRDAEGLAPNRFTSSWL-- 223 Query: 62 RIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYN---- 117 +G L ++M D K+ I + + +V ++ Y Sbjct: 224 -LGSGPLAALQQMFT----DAKQTFNVFPTGTQIQIRSNETVEKIVRELEPFGLYGFKTP 278 Query: 118 -GAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAA 176 G G D G +YE L + GQY TPR L++ ++ + + E V D + Sbjct: 279 LGLAGAGGDVVGSVYEAFL---TGTLRGDLGQYLTPRQLVEFMVEIADIKIGEKVLDLSC 335 Query: 177 GTAGFLIEADRYVKSQTNDLDDLDGDTQDF---QIHRAFIGLELVPGTRRLALMNCLLHD 233 G+ GFLI A V+ + LD + + G+E+ P L +N +LH Sbjct: 336 GSGGFLIRAFINVRKKIRFLDSSQDEKDHLVSNLVTNNLWGIEINPRLATLCRINMILHG 395 Query: 234 -IEGNLDHGGAIRLG----------NTLGSDGENLPKAHIVATNPPFG--SAAGTNITRT 280 ++ G +IR + L + N ++ NPPF + R Sbjct: 396 DGYEHIYTGDSIREDVFENTDGRRTDFLNIEQNNAAMFDVILINPPFNIPYEDSATLNRY 455 Query: 281 FV---HPTSNKQLCFMQHIIETLHP-GGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHT 336 ++ ++ I L P GR V++P V G T++R + + H+H Sbjct: 456 YLGRGKAAQGSDYLVLERAIRLLKPETGRLLVILPHGVA-SGVSETEVRNFVKSRTHIHG 514 Query: 337 ILRLPTGIFYAQG---VKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPF 393 + LP G F G +T VL+ K T N + + V YD+ + Sbjct: 515 CISLPVGSFKPFGGSNARTCVLYLKKTTGDNKKRFLAQAEHV-GYDITSKYYRETDLNDL 573 >UniRef50_A9DR80 Restriction/modification methyltransferase n=2 Tax=Bacteria RepID=A9DR80_9FLAO Length = 737 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 102/583 (17%), Positives = 198/583 (33%), Gaps = 121/583 (20%) Query: 1 MNN---NDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKET-GQEAEYLPEGYRW 56 MNN N +V+ +W + D++ Y + + L+ E + +GY++ Sbjct: 1 MNNKVHNQIVSFIWSIADDVLRDDFVRGKYRDIILPFTVLRRLDALLVPTKEDVLKGYKF 60 Query: 57 ------DDLKSRIGQEQLQFYR----------------------KMLVHLGEDDKKLVQA 88 DDL Q F+ ++ + ++ + Sbjct: 61 LKENKIDDLSGLTHQSGYPFFNTSGFTFSNSSLFDSNHPYTALTNDPANIDSNLEEYLDG 120 Query: 89 VFHNVSTTITEPKQITALVSNMDS-LDWYNGAHGKSRDD--------------------- 126 N+ I + L ++ L S++ Sbjct: 121 FSENIQQIIDRFEIRKQLPKLKENGLTPLLIEKLASKEINLSPVEIKNTKGEVLPPLTNL 180 Query: 127 -FGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPRE-------VVQDPAAGT 178 G ++E L++K E AG++FTPR +I+ + HL+ ++ + D A G+ Sbjct: 181 GMGYVFEELIRKFNEENNEEAGEHFTPREIIQLMTHLIFLPIKDKLKVAQYSIYDSACGS 240 Query: 179 AGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNL 238 G L EA++Y K T + + G E+ P T + + L+ Sbjct: 241 GGMLTEAEKYAKRITKNKTSF-----------SLYGQEVNPETWAVCNSDMLIKG----- 284 Query: 239 DHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNIT------------------RT 280 + I G+TL +D + + +NPP+G A + +T Sbjct: 285 EKDYHIAYGSTLSNDSFQFKEFDFMLSNPPYGKAWKKDEDSIVIERGKTNELIKDPRFQT 344 Query: 281 FVHPTSNKQLCFMQHIIETLHPG----GRAAVVVPDNVLFEGGK---GTDIRRDLMDKCH 333 + S+ QL F+ +++ + G R A V + LF G ++IRR L++ Sbjct: 345 GLPKISDGQLLFLSNMVHKMKKGTELGSRIASVHNGSSLFTGNAGQGESEIRRYLIESDL 404 Query: 334 LHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVY-DLRTNMPSFGKRTP 392 + I+ LP IFY G+ T + + + + + LR N+ K Sbjct: 405 VECIVALPEKIFYNTGIPTYIWILSNRKEKRRQGKIQLINALELSTPLRRNLGE--KNCE 462 Query: 393 FTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWR-KFS 451 H++ E +Y + F + + R++ +F+ Sbjct: 463 MQPSHIKQIEDLYLNFKETNISKVFDNEDFGYYDVTIE------------RPLRYKSQFT 510 Query: 452 REWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELV 494 E I + + +K + D+L E ++ E + Sbjct: 511 NEAIENLRYLNTIADEMKWMYAQFGDNLYEG--ISKEIKQKTE 551 >UniRef50_D0I0N8 Type I restriction-modification system M subunit putative n=3 Tax=Bacteria RepID=D0I0N8_VIBCH Length = 684 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 87/419 (20%), Positives = 151/419 (36%), Gaps = 69/419 (16%) Query: 3 NNDLVAKLWKLCDNLRDG--GVSYQNYVNELASLLFLKMCKET--GQEAEYLPEGYRWDD 58 + +++ ++ C N G G+ + L+F KM E ++ E+ W Sbjct: 190 DREMLLTAFRRCHNFIHGNEGMPKDAAFWQFLYLIFSKMYDERIGNRDREF------WAS 243 Query: 59 LKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNG 118 + E + R + L E KK +F + + +VS + D+ Sbjct: 244 PTEQFDDEGRKKIRARINPLFEKVKKAYPEIFAGNEEITLSDRALAFMVSELAKYDF--- 300 Query: 119 AHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGT 178 D G Y+ ++ + + GQYFTPR IK I+ ++ PQP E V DP+ GT Sbjct: 301 -TRTEMDAKGAAYQEVVG---DNLRGDRGQYFTPRGAIKLIVEMMAPQPHEKVLDPSCGT 356 Query: 179 AGFLIEADRYVKSQTNDLDDLD------------GDTQDFQIHRAFIGLELVPGTRRLAL 226 GFL + ++ Q + + + G + P R + Sbjct: 357 GGFLEQTLSFINKQLREKEAISLAAETTEEFISIQQQIKEFAENNLFGCDFDPFLCRASQ 416 Query: 227 MNCLL-HDIEGNLDHGGAIRLGN-------------TLGSDGENLPKAHIVATNPPFGSA 272 MN ++ + N+ H ++ + +G ++ TNPPFGS Sbjct: 417 MNVVMASNAMANIYHMNSLEYPHGHLKGVDPAKKTIPVGDSSGKDGSVDVILTNPPFGSD 476 Query: 273 -----------------AGTNITRTFVHPTSNK-----QLCFMQHIIETLHPGGRAAVVV 310 F K ++ F++ ++ L GGR +V+ Sbjct: 477 IPVTDKQILEQYDLAYVWERTENGGFRKTERRKDAVSPEILFIERCVQWLKQGGRMGIVL 536 Query: 311 PDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIF---YAQGVKTNVLFFTKGTVANPN 366 PD +L G IR LM +C + + LP F + T++LF K T + Sbjct: 537 PDGILGNPGDEY-IRWWLMQECWVLGCVDLPVESFIVEANVNILTSLLFLKKKTDTEKD 594 >UniRef50_C3RBV5 N-6 DNA methylase n=5 Tax=Bacteroidales RepID=C3RBV5_9BACE Length = 658 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 77/382 (20%), Positives = 140/382 (36%), Gaps = 50/382 (13%) Query: 71 YRKMLVHL-GEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGD 129 R++L + G+ + + +F N++ + A V N+D G Sbjct: 116 IREILKNFTGKGENASLSDIFSNLARKNLLLQVTKAFVLNID-----LSPDKVDNHMMGT 170 Query: 130 MYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL---------KPQPREVVQDPAAGTAG 180 ++E +++ GAGQ++TPR +++ + + + V DP GT G Sbjct: 171 VFEIVIRYAKESVGIGAGQFYTPRDIVRLMTEITLLGQEDKIYQDGKIISVYDPCCGTGG 230 Query: 181 FLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDH 240 L ++ + + + G EL T L + ++ E Sbjct: 231 ILTLTKDTIEETAKE--------RRVDVTVNLFGQELNDKTYALCKSDIIMKGDEAK--- 279 Query: 241 GGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITR-------------TFVHPTSN 287 I +G+TL D K + + NPP+G + S+ Sbjct: 280 --GIAVGDTLLVDEFRDQKFNFMLANPPYGVDWKREYDSVSAEAEDKNSRFAPGLPDKSD 337 Query: 288 KQLCFMQHIIETLHPGG-RAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTG 343 QL F H++ + P G R ++ + LF GG G ++IR+ ++D L I+ LP G Sbjct: 338 GQLLFTLHMLHKMDPKGSRVGILSNGSPLFNGGAGSGWSNIRKHMLDNDLLDAIIALPGG 397 Query: 344 IFYAQGVKTNVLFFTKGTVANPNQDK---NCTDDVWVYDLRTNMPSFGKRTPFTDEHLQP 400 +FY G+ T + F + N D +V +R N+ K +D Sbjct: 398 LFYGTGIATYLWIFDNKKPESHKNKVLLINAAKDEYVQPMRKNL--GMKNVLVSDYGRSE 455 Query: 401 FERVYGEDPHGLSPRTEGEWSF 422 R+Y + + + F Sbjct: 456 IGRIYHAFETCDNAKLMDKDDF 477 >UniRef50_A6GSS6 Type I restriction-modification system methyltransferase subunit n=1 Tax=Limnobacter sp. MED105 RepID=A6GSS6_9BURK Length = 682 Score = 215 bits (547), Expect = 4e-54, Method: Composition-based stats. Identities = 97/507 (19%), Positives = 173/507 (34%), Gaps = 86/507 (16%) Query: 4 NDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK--------------ETGQEAEY 49 + L +WK + LR G Y + L+ E + ++Y Sbjct: 2 SKLADLIWKNAELLR-GAYRENEYRKVILPFTILRRLDCVLAPKREEVYTQYEALRNSKY 60 Query: 50 LPEGY-------------RWD-DLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAV-FHNVS 94 E R+ + ++ + M+ ++ + + + F + Sbjct: 61 DMEKILTTISDYPFFNTSRFSLEALAQTPDDVRDNLEAMVNGFSQNVRDIFEKFGFISTI 120 Query: 95 TTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRP 154 + E ++ +V D S D G +E LL+K + + AG+ +TPR Sbjct: 121 NKLEEKGRLYLVVQRFAETDLNPDV--VSNHDMGMAFEELLRKFNDVS--PAGEQYTPRD 176 Query: 155 LIKTIIHLLK---------PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQD 205 +I+ ++ LL P + + DP AGT G L + YVK + Sbjct: 177 VIELMVSLLFSTDQDLLSIPGIVKTMYDPTAGTGGLLSVGEEYVKRMNDRAV-------- 228 Query: 206 FQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVAT 265 + G EL T + + L+ + I +TL D A Sbjct: 229 ----LSLFGQELEDETYAICKADMLIRG-----QNPANIVNEDTLKIDLLAGEVFDYQAA 279 Query: 266 NPPFGSAAGT--------------NITRTFVHPTSNKQLCFMQHIIETLHP------GGR 305 NPP+G + + Q+ F H++ + P GGR Sbjct: 280 NPPYGVEWKPAEDAVRREHKLGAAGRFAPGLPAIRDGQMLFSLHLLSKMRPFIDGKGGGR 339 Query: 306 AAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTV 362 VV + LF G ++IRR +M +L I+ +PT +FY ++T + F T Sbjct: 340 IGVVHNGSPLFAGDAGSGESEIRRYIMANDYLEAIVAMPTDLFYNTNIQTYLWFMTNRKP 399 Query: 363 ANPNQDKNCTDDVWV-YDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWS 421 D + ++ N+ KR FT++ + + Y + GE Sbjct: 400 EKRQGKVMLLDASKMGVLMKKNLGK--KRREFTEDCIAQINKAYEDFKDMTWKDPAGERV 457 Query: 422 FNAEETEVADSEENKNTDQHLATSRWR 448 NA+ + A K T + R++ Sbjct: 458 LNAKVFDNAHFHYRKVTIERPLRMRFQ 484 >UniRef50_C8MCW8 Predicted protein n=1 Tax=Staphylococcus aureus A9635 RepID=C8MCW8_STAAU Length = 625 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 85/422 (20%), Positives = 163/422 (38%), Gaps = 46/422 (10%) Query: 9 KLWKLCDN--LRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLKSRIGQE 66 K++++C N + G NE+ +LF+K+ E + G + + + Sbjct: 170 KIFEICHNHVYANDGHLKDKVFNEMLKILFIKLMDERNHTSRIADFGITEQEYDEILNHK 229 Query: 67 QLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDD 126 + F + + +L K Q +F+ + + +V M + D SRD Sbjct: 230 ENDF-KVRINNLFNKAKNNYQDIFNPNEKINLKLSTLAFVVGQMQNFDL----SHSSRDV 284 Query: 127 FGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEAD 186 G ++ + + G++FTP P+I+ + ++ P+ E + DPA GT GFL+ A Sbjct: 285 KGLAFQKFV---YAHQRGDRGEFFTPDPIIELAVKMINPKIDETILDPACGTGGFLVAAL 341 Query: 187 RYVKSQTNDLDDLD----GDTQDFQIHRAFIGLELVPGTRRLALMNCLL----HDIEGNL 238 ++V+ DL + R G++ P +++ M +L H Sbjct: 342 KHVEESIIDLKAERPIDFEKAKTDYALRKLRGIDFNPDLVKVSKMRMILEDDGHTGIFQA 401 Query: 239 DHGGAIRLGNTL----GSDGENLPKAHIVATNPPFGSAA---GTNITRTF---------- 281 + +R G++ N I+ TNPPFG +I R + Sbjct: 402 NSLDTLREIEIQALKSGANNINENSVDIILTNPPFGRKGTITDKDILRQYELGHQWVKNN 461 Query: 282 -VHPTSNK-------QLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCH 333 + S+K + F++ + L G+ A+V+PD+VL G K +R ++ + Sbjct: 462 DSYENSHKVLDDQVPDILFIERCYQFLKNKGKMAIVLPDSVL-TGPKLQYVRNYILKRFK 520 Query: 334 LHTILRLPTGIFYAQG--VKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRT 391 + ++ LP F G VK ++L K + + ++ D+ K Sbjct: 521 VVGVVSLPYETFIPHGANVKASILLLQKLDSKTMEELNTDGYESFMVDIEKIGYQGNKNG 580 Query: 392 PF 393 Sbjct: 581 TL 582 >UniRef50_B2A7S7 N-6 DNA methylase n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A7S7_NATTJ Length = 621 Score = 213 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 78/410 (19%), Positives = 154/410 (37%), Gaps = 55/410 (13%) Query: 8 AKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLKSRIGQEQ 67 +++LC++LR G + + Y++ + +L +K ET + Y+PE W+ L + G Sbjct: 4 KHIFQLCEHLR-GELQPEEYLDVIFPVLTIKHISET-KSPYYIPEDATWNCLIA-SGLNL 60 Query: 68 LQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDF 127 ++ K + L E + + V + + + +D + + D Sbjct: 61 VKRVEKAI-ELIEGNNYRLNNVLNIFPGKSLSDVNLYNFMLGIDEIQDHKQFLKTVID-- 117 Query: 128 GDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADR 187 + +G + T L + I+ L+ P D AG LIEA Sbjct: 118 ---------HFSKRIGKASGVWHTSNTLNELIVRLIAPMDG-SFYDGTAGLCNTLIEASE 167 Query: 188 YVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLL---HDIEGNLDHGGAI 244 + + + L G E+ P L +N + HD+ L+ ++ Sbjct: 168 FAEQEGGALQ--------------LYGQEIDPKIWALGKINLIFNECHDV--VLEREDSL 211 Query: 245 RLGNTLGSDGENLPKAHIVATNPPFGSAAGT---------NITRTFVHPTSNKQLCFMQH 295 R N + ++ NL + N PFG R + + + F+ H Sbjct: 212 R--NPMTTEDNNLKTFDYIGMNIPFGLRDWGVEEARRDLFGRFRYGIPSKQHGDMAFILH 269 Query: 296 IIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVL 355 + +L+ G+AA+VVP VLF GG+ IR L++ + ++ LP+G+ + +++ Sbjct: 270 ALTSLNRSGKAAIVVPHGVLFRGGREAKIREKLINNDVIEGVVDLPSGLLAGTNIPVSII 329 Query: 356 FFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVY 405 K + + T+ +++ + + E L Y Sbjct: 330 ILNK------LKPEESTEKIFMVNAKDIEHKGF---ELPREDLDMIIEAY 370 >UniRef50_Q1CR91 Type I restriction enzyme M protein n=1 Tax=Helicobacter pylori HPAG1 RepID=Q1CR91_HELPH Length = 670 Score = 211 bits (538), Expect = 4e-53, Method: Composition-based stats. Identities = 69/336 (20%), Positives = 122/336 (36%), Gaps = 58/336 (17%) Query: 135 LQKNANETKSGAGQYFTPRPLIKTIIHLL----KPQPREVVQDPAAGTAGFLIEADRYVK 190 ++ A+E+ GQ++TP + + LL + + + DP G+ L++A Sbjct: 1 MRHFASESGKSKGQFYTPSEVSLLLSLLLGIDENTRQDKSIYDPTCGSGSLLLKASSLAG 60 Query: 191 SQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD-IEGNLDHGGAIRLGNT 249 G E T L MN +LH+ + ++ GG+ L N Sbjct: 61 KNG----------------LTIYGQEKDISTTALCKMNMILHNSADADIAKGGSSTLSNP 104 Query: 250 L-GSDGENLPKAHIVATNPPFGSAAGT-----------------NITRTFVHPTSNKQLC 291 L ++ L V NPPF T N P N Sbjct: 105 LFTTENGMLKTFDYVVANPPFSLKNWTDGLSIDPKSKQVINDHFNRFEDGTPPEKNGDFA 164 Query: 292 FMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVK 351 F+ HII++L G+ AV++P VLF G IR++L+ K ++ ++ L +FY + Sbjct: 165 FLLHIIKSLKNTGKGAVILPHGVLFRGNAEGVIRKNLLTKGYIKGVIGLAPNLFYGTSIP 224 Query: 352 TNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHG 411 V+ K ++ V+V D + G + ++ +Q + Sbjct: 225 ACVIVLDK-------KNARARKGVFVIDASKDFKKDGNKNRLREQDVQKMIDTFN----- 272 Query: 412 LSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRW 447 E + +++ EE D +L R+ Sbjct: 273 --ALKEIPY-----YSKMVSLEEISANDYNLNIPRY 301 >UniRef50_A8UNU7 N-6 DNA methylase n=1 Tax=Flavobacteriales bacterium ALC-1 RepID=A8UNU7_9FLAO Length = 603 Score = 211 bits (536), Expect = 6e-53, Method: Composition-based stats. Identities = 84/523 (16%), Positives = 171/523 (32%), Gaps = 92/523 (17%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK---ETGQEAEYLPEGYRWDD 58 + ++ +W + D++ Y + + + L+ E ++ Sbjct: 7 SLQPIINFIWTVADDVLINKYLENQYQDVILPMTVLRRLDLALEKSKDKVLKTHNEFKSK 66 Query: 59 LKSRIGQ-------EQLQFYR---------------------KMLVHLGEDDKKLVQAV- 89 + + G L FY L E+ + ++ Sbjct: 67 MDNLDGLLTSETHGSGLAFYNTSPYTMKKLLDDPKNIDSNFLDYLNGYSENVQDIISKFK 126 Query: 90 FHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQY 149 F N T+ +L+ + S G M+E L+++ +T + AG++ Sbjct: 127 FRNQLETLENGGITFSLIEKFCNPKVELRPEKISPMAMGYMFEDLIRRFNEKTNAAAGRH 186 Query: 150 FTPRPLIKTIIHLLKPQPREVV-------QDPAAGTAGFLIEADRYVKSQTNDLDDLDGD 202 FTPR +I+ + HL+ +E + DP AG+ L ++ +Y + ++ Sbjct: 187 FTPREIIELMTHLVYLPVKEKIQNGTFLVYDPCAGSGAMLTQSKKYATNPDGEIKS---- 242 Query: 203 TQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDG-ENLPKAH 261 + G E + LL + + I+ G+TL G E K + Sbjct: 243 ----KATFHLYGQENTGEMYATCKSDMLLKNEDP-----DKIKFGSTLSEYGFEPNLKFN 293 Query: 262 IVATNPPFGSAAGTNIT------------------------------RTFVHPTSNKQLC 291 + TNPP+G++ ++ +T +++ QL Sbjct: 294 FMLTNPPYGTSWKEDLKSLTNSSNKKQDIVDTRFNLKIKNFKGELEEQTLASRSNDGQLM 353 Query: 292 FMQHIIETLHP----GGRAAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGI 344 FM H++ + G R A V + LF G + IR+ +++ L I++LP + Sbjct: 354 FMLHMLSKMKDPKDGGSRIASVHNGSALFTGDAGSGESGIRQYILENDLLECIIQLPNDM 413 Query: 345 FYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPS--FGKRTPFTDEHLQPFE 402 FY G+ T + + + + M KR H+ + Sbjct: 414 FYNTGIATYIWILSNVKEEKRKGKVQLINASSKDEFSKKMRKPLGDKRVELNPNHILDIQ 473 Query: 403 RVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATS 445 +Y + + F + V E +++ Sbjct: 474 NLYFDFEENQYSKIFNNEDFGYYQITVHQPERDEDGKIVTDKK 516 >UniRef50_C8WMW5 N-6 DNA methylase n=3 Tax=Bacteria RepID=C8WMW5_EGGLE Length = 799 Score = 210 bits (535), Expect = 9e-53, Method: Composition-based stats. Identities = 82/446 (18%), Positives = 144/446 (32%), Gaps = 86/446 (19%) Query: 11 WKLCDNLRDGGVSYQNYVNELASLLFLK----------------------------MCKE 42 W + D LR G Y + + +K +E Sbjct: 26 WNVADTLR-GPYKPHEYGLVILPMTVIKRFHDCLLPTHGKVVEAAEEYKNFAVKDGFLRE 84 Query: 43 TGQEAEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAV-FHNVSTTITEPK 101 Y + ++ LK+ ++ L E+ + ++ + F +++P Sbjct: 85 ASGYPFYNTSKFTFETLKADPA-NIEDNFKDYLNGFSENVQDILARMDFFRQIERLSDPD 143 Query: 102 --QITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTI 159 + +VS+ + D G ++E L+Q+ + AG +FT R ++ + Sbjct: 144 APLLYQVVSDFCAERADMSPEKIKPVDMGYIFENLIQRFSESYDEDAGAHFTSRDIVYLM 203 Query: 160 IHLL---------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHR 210 LL + + V D GT+ L + ++ +D Sbjct: 204 TDLLIAADPHVFDGDRISKTVYDQTMGTSQMLSCTEERLRQLDDDAR------------V 251 Query: 211 AFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFG 270 G E P T +A + L+ + +R G+TL SD K +NPPFG Sbjct: 252 TCFGQEFNPFTFGIAKASALIRGEDD-----ANMRFGDTLSSDKFADYKFDYCISNPPFG 306 Query: 271 SAAGTNIT-------------RTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFE 317 T + + Q+ FM + I L G +V + L++ Sbjct: 307 GDWKLEETAVRKEAKLTGSRFHVGLPARGDGQMLFMLNGIAKLKDEGVMVIVQDASPLYK 366 Query: 318 G---GKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDD 374 G IR +++ L I+RL FY G+ T + KG + Sbjct: 367 GKPESGEDKIRSYILENDWLDAIIRLSGDAFYNTGLVTFLWVINKGKP------EKRAGK 420 Query: 375 VWVYDLR-----TNMPSFGKRTPFTD 395 V + D N P KR T Sbjct: 421 VQLIDASGCCVPRNRPIGKKRNDITK 446 >UniRef50_Q160U6 Type I restriction-modification system DNA methylase, putative n=12 Tax=Proteobacteria RepID=Q160U6_ROSDO Length = 677 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 94/496 (18%), Positives = 166/496 (33%), Gaps = 87/496 (17%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK-------ETGQE-------- 46 N L +WK D+L G + + + L+ + E +E Sbjct: 7 KNTSLADFIWKNADDLW-GDFRHTEFGKIILPFTLLRRLECVLAPTREEVRETVKNLGDS 65 Query: 47 --------------AEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAV-FH 91 Y Y DL+S + ++ + + + F Sbjct: 66 GIDMDVILRQQTGFPFYNTSNY---DLRSLGATRTRANLEDYISQFSDNARVIFEQFDFA 122 Query: 92 NVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFT 151 N + + + N ++D + ++YE L+++ E A + T Sbjct: 123 NTIARMDRAGVLYKICQNFAAIDLHPDT--VPERTMSNVYEHLIRRFGAEVNEAAEDFMT 180 Query: 152 PRPLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDG 201 PR ++ I LL P + DP GT GFL + +V++ Sbjct: 181 PRDVVHLAIELLLDPDDQLFIENPGLIRTLYDPTCGTGGFLSDGMEHVRNL--------Q 232 Query: 202 DTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN--LDHGGAIRLGNTLGSDGENLPK 259 D G EL P T + L LL +E + D I LG+TL +D K Sbjct: 233 DRYSIAPVIIPYGQELEPETHAVCLAGMLLKTLETDPGRDLSKNIALGSTLSADKHRPEK 292 Query: 260 AHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETL------------------- 300 H +NPPFG + +K+ F L Sbjct: 293 FHYCVSNPPFGKKWEKDQAD---VTREHKEQGFEGRFGPKLPRVSDGSMLFLLHLLSKLE 349 Query: 301 ---HPGGRAAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNV 354 + GGRAA+++ + LF G ++IRR L+++ + I+ LPT IF+ G+ T + Sbjct: 350 SPENGGGRAAIILSGSPLFNGNAGQGESEIRRHLLEQDVVEAIIALPTEIFFRTGIGTYI 409 Query: 355 LFFTKGTVANPNQDKNCTDDVWVYD-LRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLS 413 + A+ + +Y+ +R + KR ++ + ++Y + Sbjct: 410 WILSNDKPAHRKGKVQLINATEMYEPMRKS--EGNKRRRVGEQQTRDIVQMYADFEATKQ 467 Query: 414 PRTEGEWSFNAEETEV 429 F +V Sbjct: 468 SLILSAPDFGYRRIKV 483 >UniRef50_B0JHK8 Type I restriction enzyme EcoEI M protein homolog n=2 Tax=Microcystis aeruginosa RepID=B0JHK8_MICAN Length = 677 Score = 208 bits (529), Expect = 4e-52, Method: Composition-based stats. Identities = 97/523 (18%), Positives = 194/523 (37%), Gaps = 62/523 (11%) Query: 7 VAKLWKLCDNL--RDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLKSRIG 64 ++ +++ C N + G+ +E+ L+ +K+ E + G + K+ + Sbjct: 30 LSAVFEECHNYIYANEGMLKDKIFHEMVKLIIIKLHDEKSAKQSVN-FGVTASEYKAIVA 88 Query: 65 QEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSR 124 + +F + L L K + F + + + +P + +V + ++ S Sbjct: 89 NKSDEFMSR-LSQLFTSIKNHYRGFFTDDTFKL-KPLTLAYIVGRLQYINL----TKTSG 142 Query: 125 DDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIE 184 D G+ ++ + ++ + G++FTP P+++ + ++ P+P E + DPA G+ GFLI+ Sbjct: 143 DIKGEAFQTFVNRH---QRGDRGEFFTPHPIVRLAVEMIDPKPNEKIIDPACGSGGFLIQ 199 Query: 185 ADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAI 244 A +V+ + D + + G+E P ++ + G I Sbjct: 200 AINHVRQNNPEFDIAS------FVQESITGIEFNPDVALSGMIRLVFEGG-----TGSEI 248 Query: 245 RLGNTLGSDGENLPKAHIVATNPPFGSAAGTN---------ITRTFVHPTSNK------- 288 N L D + ++ TNPPFG+ + R + SN Sbjct: 249 ICTNALIEDEKLNNSFDVILTNPPFGNKGKVEDQKILKSYLLARKWHKSASNGWEVSPTV 308 Query: 289 ------QLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPT 342 + F++ I+ L GGR A+++PD +L G IR L + + ++ +P Sbjct: 309 LAGQSPDILFIEKSIKLLRAGGRMAIILPDGLLQNISNGP-IRHWLRSQTKILGVVSIPP 367 Query: 343 GIF--YAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQP 400 F Y G+KT++L K + D ++ ++ +T + Sbjct: 368 EAFVPYGTGIKTSLLVVQKLPANH--------DSCFMAQIKKIGYDVKGQTIYKRNESGV 419 Query: 401 FERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKS 460 R P + SF + + E +N+D + Sbjct: 420 IARTKSGLPIVDDDIDDISQSFRS----FINGEFAQNSDCIYTVKN--TLLNSRLDAEHY 473 Query: 461 DSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDAL 503 D L+ SI A L E + EA + SE+ + Sbjct: 474 LPNDQKLLEHLKSIGAKPLGEIADILREAADFRLARDSEIRYI 516 >UniRef50_A6L5S5 Type I restriction-modification system M subunit n=1 Tax=Bacteroides vulgatus ATCC 8482 RepID=A6L5S5_BACV8 Length = 771 Score = 208 bits (529), Expect = 5e-52, Method: Composition-based stats. Identities = 84/502 (16%), Positives = 171/502 (34%), Gaps = 109/502 (21%) Query: 4 NDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK--------ETGQEAEYLPEGYR 55 L+A +W + D++ Y + + ++ L+ QE + E Sbjct: 2 EQLIALIWNIADDVLRDVFLRGQYRDVILPMVVLRRLDALLEPTKVAVEQEYKSQIEAGL 61 Query: 56 WDDLK-SRIGQEQLQFY--------------------------RKMLVHLGEDDKKLVQA 88 D+L + E Q Y + L E+ K +++ Sbjct: 62 ADNLDEEALKDESGQTYYNLSKWTLNRLKNQSSDNNDINYTNFIEYLNGYSENVKDVLKN 121 Query: 89 V-FHNVSTTITEPKQITALVSNMDSLDWYNGAH-----------GKSRDDFGDMYEGLLQ 136 F+ + + ++ +++ + S G ++E LL+ Sbjct: 122 FEFYAKVKKLADNDRLISIIERITDPRLNLTDRPATDPDGLPLPAVSNLQMGTLFEELLR 181 Query: 137 KNANETKSGAGQYFTPRPLIKTIIHLLKPQPRE------VVQDPAAGTAGFLIEADRYVK 190 + E AG++FTPR +I+ + ++ ++ + DPA G+ G L E Y+ Sbjct: 182 RFNEENNEEAGEHFTPRDVIELLAKMVFEPVKDNLPKIISLYDPACGSGGMLTEGRDYLL 241 Query: 191 SQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTL 250 + + + G E+ P T + + ++ ++ H GNT+ Sbjct: 242 NMGVTPNAIQ-----------MYGTEVNPETYAICKSDFIIKGVDPEGMHR-----GNTI 285 Query: 251 GSDGENLPKAHIVATNPPFGSAAGTNITRTF--------------------------VHP 284 + + + + TNPP+G + + + + Sbjct: 286 TENHFHNKQFGYMLTNPPYGKSWKEDKKKIYHDKDLLDARFNLKLTNFIGEEEIVDSTPR 345 Query: 285 TSNKQLCFMQHIIETLHP------GGRAAVVVPDNVLFEGGK---GTDIRR-DLMDKCHL 334 TS+ QL F+ ++ + G R A + + LF G ++IRR L++ + Sbjct: 346 TSDGQLLFILEEVDKMKSLEAQPQGSRVASIHNGSSLFTGDAGSGESNIRRYYLIENNLV 405 Query: 335 HTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFT 394 I++LP IFY G+ T V + + Q + + LR N+ S + T Sbjct: 406 DAIVQLPNNIFYNTGISTYVWLLSNHKQDHKVQLIDASKA--FDKLRKNLGS--RNCEVT 461 Query: 395 DEHLQPFERVYGEDPHGLSPRT 416 + R+Y + Sbjct: 462 PKDADDIVRIYMNRTECEANDD 483 >UniRef50_C7IHQ9 N-6 DNA methylase n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IHQ9_9CLOT Length = 737 Score = 208 bits (529), Expect = 5e-52, Method: Composition-based stats. Identities = 104/548 (18%), Positives = 189/548 (34%), Gaps = 72/548 (13%) Query: 1 MNNNDLVAKLWKLCDNLRDGGV-SYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDL 59 ++ DL + D L GG + +EL ++F K+ E P Y + Sbjct: 177 VSEQDLTRIFRQAHDALWAGGKRNPSEAFDELDKVIFCKLWDERTLRKNGEP--YNFQVF 234 Query: 60 KSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGA 119 + LQ + + K VF + K++ +V + ++ Sbjct: 235 TGEATDKLLQRIK----SIYNKGKAKDPEVFRDD--IRLNAKELETVVGYLAKVNL---- 284 Query: 120 HGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTA 179 D G +E + + GQYFTPR ++K I+ L VV D + G+ Sbjct: 285 TATDLDSKGKAFETFMGSFF---RGEFGQYFTPRNIVKFIVESLPITNESVVLDTSCGSG 341 Query: 180 GFLIEADRYVKSQTNDLDDLDGDTQDFQIH---------RAFIGLELVPGTRRLALMNCL 230 GFL+ A V++ + + ++D + H + G+E+ R A MN + Sbjct: 342 GFLLYALDKVRNIADQKAEEGYFSKDSKEHWNFWHDFAEKRLYGVEISESIARTAKMNMI 401 Query: 231 LH-DIEGNLDHGGAI----RLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTF---- 281 +H D N+ + +L T + G + + TNPPFGS + R Sbjct: 402 IHDDGHTNVVAFDGLEGIDKLSETTKNPGFKKNRFDFIITNPPFGSTIKYSEHRYIEDFE 461 Query: 282 --------------------VHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKG 321 + ++ F++ + LH GG A+V+PD +L Sbjct: 462 LGCKSIDWIEAKLKNVDLNSPRDNQSSEILFIERCHQYLHDGGILAIVIPDGILTNSSM- 520 Query: 322 TDIRRDLMDKCHLHTILRLPTGIFY--AQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYD 379 +R + +K + ++ +P F GVK++VLF K + + Sbjct: 521 QYVRDWIEEKYRIIAVVSMPQTAFTANGAGVKSSVLFLYKLSEKDTAT------------ 568 Query: 380 LRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWS-FNAEETEVADSEENKNT 438 +R S +T E+ + E L + A + + N Sbjct: 569 IRAIKKSLQDKTFDKPEYGAAITALEQEKQTILKRGDVTKQEMEEAFVSHIEALRAQGNH 628 Query: 439 DQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDV-LAAEAMGELVQAL 497 + + + + KS+S SW K+ + + L+ E G + L Sbjct: 629 TKDIERQLTKGHKEKVKEYEKSESFQ-SWKKETTEEFNERISNIKENLSDEYTGLVKDKL 687 Query: 498 SELDALMR 505 + M Sbjct: 688 NNYPIFMA 695 >UniRef50_B4VWN4 N-6 DNA Methylase superfamily n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VWN4_9CYAN Length = 396 Score = 207 bits (527), Expect = 9e-52, Method: Composition-based stats. Identities = 60/262 (22%), Positives = 103/262 (39%), Gaps = 26/262 (9%) Query: 162 LLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGT 221 +L+P V DP G G +++++++ + +DD+ + G E T Sbjct: 1 MLEPYQG-RVFDPCCGLGGMFVQSEKFIAAHQGRIDDI-----------SIYGQESNETT 48 Query: 222 RRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAG------- 274 +L MN + I+G+ + +D KA V NPPF + Sbjct: 49 YKLCRMNLAIRWIDGSNIKWN---PEGSFLNDAHKDLKADFVIANPPFNDSDWGGELLRK 105 Query: 275 TNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLF-EGGKGTDIRRDLMDKCH 333 R V P N ++QH + L P G A V+ + L G +IR+ L++ Sbjct: 106 DGRWRYGVPPVGNANFAWVQHFLYHLAPTGAAGFVLSNGSLSLNTGGEGEIRQALVEADL 165 Query: 334 LHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTP- 392 + I+ LPT +FY G+ + F ++ N N+++ +V D +R Sbjct: 166 VDCIVMLPTQLFYNTGIPACLWFLSRYKNGNKNRNRQ--GEVLFIDASELGYMVNRRNRA 223 Query: 393 FTDEHLQPFERVYGEDPHGLSP 414 FT+E + Y SP Sbjct: 224 FTEEDIGKIAGTYHTWKRKPSP 245 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P08957 Type I restriction enzyme EcoKI M protein n=51 T... 547 e-154 UniRef50_C9P2L7 Type I restriction-modification system DNA-methy... 396 e-109 UniRef50_Q210J9 N-6 DNA methylase n=5 Tax=Proteobacteria RepID=Q... 392 e-107 UniRef50_C4KDM7 Site-specific DNA-methyltransferase (Adenine-spe... 384 e-105 UniRef50_B0VPS9 DNA methylase M, host modification n=3 Tax=Prote... 378 e-103 UniRef50_D1C5W3 N-6 DNA methylase n=39 Tax=cellular organisms Re... 376 e-102 UniRef50_C6CZ62 N-6 DNA methylase n=16 Tax=Bacteria RepID=C6CZ62... 369 e-100 UniRef50_D0LNE1 Type I restriction-modification system, M subuni... 368 e-100 UniRef50_C3MFA0 N-6 DNA methylase n=5 Tax=Proteobacteria RepID=C... 367 e-100 UniRef50_UPI0001C36A8B N-6 DNA methylase n=1 Tax=Clostridium hat... 363 1e-98 UniRef50_A1T135 N-6 DNA methylase n=22 Tax=Actinomycetales RepID... 362 2e-98 UniRef50_A1WBU7 N-6 DNA methylase n=19 Tax=Bacteria RepID=A1WBU7... 361 3e-98 UniRef50_Q2J5S8 N-6 DNA methylase n=5 Tax=Bacteria RepID=Q2J5S8_... 357 8e-97 UniRef50_A5VVC4 Type I restriction-modification system, M subuni... 353 8e-96 UniRef50_C8XCE4 Site-specific DNA-methyltransferase (Adenine-spe... 352 1e-95 UniRef50_A4AK44 Type I restriction-modification system methylati... 350 5e-95 UniRef50_A4XPR7 Type I restriction-modification system, M subuni... 348 3e-94 UniRef50_D0MHM2 N-6 DNA methylase n=3 Tax=Bacteria RepID=D0MHM2_... 348 3e-94 UniRef50_A8L1U0 N-6 DNA methylase n=3 Tax=Actinomycetales RepID=... 345 3e-93 UniRef50_A3XPV4 Type I restriction-modification system specifici... 345 3e-93 UniRef50_A7HVM7 Type I restriction-modification system, M subuni... 343 1e-92 UniRef50_A8YW15 Type I restriction modification system n=8 Tax=B... 343 1e-92 UniRef50_B2HKY8 Type I restriction/modification system DNA methy... 341 4e-92 UniRef50_B6ENI7 N-6 adenine-specific DNA methylase n=19 Tax=root... 341 5e-92 UniRef50_C0QCH3 HsdM2 n=5 Tax=Bacteria RepID=C0QCH3_DESAH 340 7e-92 UniRef50_A1AQ49 N-6 DNA methylase n=2 Tax=Proteobacteria RepID=A... 340 1e-91 UniRef50_A8ZTW6 N-6 DNA methylase n=5 Tax=cellular organisms Rep... 340 1e-91 UniRef50_Q89Z59 Probable type I restriction enzyme BthVORF4518P ... 339 1e-91 UniRef50_B8HN07 N-6 DNA methylase n=2 Tax=Bacteria RepID=B8HN07_... 339 1e-91 UniRef50_A5UWR2 N-6 DNA methylase n=9 Tax=cellular organisms Rep... 339 2e-91 UniRef50_Q0KFR5 Type I restriction-modification system methylati... 338 3e-91 UniRef50_A1ZTI9 Type I restriction-modification system specifici... 337 5e-91 UniRef50_D0LVD7 Site-specific DNA-methyltransferase (Adenine-spe... 334 6e-90 UniRef50_C9KRW3 Type I restriction-modification system, M subuni... 330 6e-89 UniRef50_C8VZI4 Type I restriction-modification system, M subuni... 329 2e-88 UniRef50_C6MIL3 N-6 DNA methylase n=1 Tax=Nitrosomonas sp. AL212... 327 7e-88 UniRef50_B0S355 Type I restriction-modification system DNA methy... 327 8e-88 UniRef50_B3EQE6 Type I restriction-modification system, M subuni... 325 2e-87 UniRef50_C6BT25 N-6 DNA methylase n=1 Tax=Desulfovibrio salexige... 325 3e-87 UniRef50_D2TNZ8 Putative type I restriction modification system ... 323 1e-86 UniRef50_D2R8Y7 Type I restriction-modification system, M subuni... 323 1e-86 UniRef50_B5H9V2 N-6 DNA methylase n=1 Tax=Streptomyces pristinae... 322 2e-86 UniRef50_Q7VG99 Type I restriction-modification system n=2 Tax=B... 322 2e-86 UniRef50_Q72BC7 Type I restriction-modification system, M subuni... 322 2e-86 UniRef50_B5Y2R2 Type I restriction-modification system, M subuni... 322 3e-86 UniRef50_B8F3Y0 Type I restriction-modification system methyltra... 320 6e-86 UniRef50_UPI0001BC44FA type I restriction-modification system DN... 320 7e-86 UniRef50_A1U632 N-6 DNA methylase n=17 Tax=cellular organisms Re... 320 8e-86 UniRef50_A6WNE4 Type I restriction-modification system, M subuni... 318 3e-85 UniRef50_C6DZ06 Type I restriction-modification system, M subuni... 318 4e-85 UniRef50_C3JA79 Type I restriction-modification system, M subuni... 315 3e-84 UniRef50_Q3ADV1 Type I restriction-modification system, M subuni... 315 4e-84 UniRef50_B0TYP3 Type I restriction-modification system methyltra... 314 6e-84 UniRef50_A3XVM8 Type I restriction-modification system M subunit... 312 2e-83 UniRef50_A6NS04 Putative uncharacterized protein n=1 Tax=Bactero... 312 2e-83 UniRef50_B1MYY1 Type I restriction-modification system, M subuni... 312 2e-83 UniRef50_Q6YRQ9 Slr6095 protein n=4 Tax=Bacteria RepID=Q6YRQ9_SYNY3 310 1e-82 UniRef50_A6LK23 Type I restriction-modification system, M subuni... 310 1e-82 UniRef50_Q3A0E7 Type I restriction-modification system methyltra... 310 1e-82 UniRef50_D1XRZ6 N-6 DNA methylase n=1 Tax=Streptomyces sp. ACTE ... 309 2e-82 UniRef50_D1VRI9 PutatIve type i restriction enzyme hindviip m pr... 309 2e-82 UniRef50_B5EVZ6 Type I restriction-modification system, M subuni... 306 1e-81 UniRef50_A8YVB4 Type I restriction-modification system modificat... 306 2e-81 UniRef50_B7GLJ2 Type I restriction-modification system methyltra... 305 3e-81 UniRef50_Q5LGD1 Putative modification protein of type I restrict... 304 5e-81 UniRef50_A3CUH5 N-6 DNA methylase n=4 Tax=cellular organisms Rep... 303 7e-81 UniRef50_Q0AUQ5 Type I restriction-modification system, M subuni... 302 2e-80 UniRef50_Q1MKB0 Putative type I restriction enzyme modification ... 302 3e-80 UniRef50_C1ZKX4 Type I restriction-modification system methyltra... 301 5e-80 UniRef50_C2C3E3 Site-specific DNA-methyltransferase, adenine-spe... 300 6e-80 UniRef50_B1VHI4 Type I restriction-modification system, methyltr... 300 7e-80 UniRef50_B1IB55 Type I restriction modification enzyme methylase... 300 7e-80 UniRef50_C7TL46 Type I restriction-modification system, M subuni... 300 1e-79 UniRef50_Q3ZWI3 Putative type I restriction-modification system ... 298 2e-79 UniRef50_Q73QS4 Type I restriction-modification system, M subuni... 298 4e-79 UniRef50_C3PKU9 Type I restriction enzyme M protein n=8 Tax=Bact... 297 6e-79 UniRef50_Q5M500 Type I restriction-modification system methyltra... 297 7e-79 UniRef50_C0QQY6 Type I restriction enzyme M protein (HsdM) n=1 T... 297 9e-79 UniRef50_B7RYA8 N-6 DNA Methylase family protein n=2 Tax=Bacteri... 297 9e-79 UniRef50_B4S4B5 N-6 DNA methylase n=3 Tax=Bacteria RepID=B4S4B5_... 297 1e-78 UniRef50_A8ZY58 N-6 DNA methylase n=1 Tax=Desulfococcus oleovora... 297 1e-78 UniRef50_C7MM99 Type I restriction system adenine methylase HsdM... 296 1e-78 UniRef50_B3CDF6 Putative uncharacterized protein n=1 Tax=Bactero... 296 1e-78 UniRef50_A9A373 Type I restriction-modification system, M subuni... 296 1e-78 UniRef50_UPI0001B4AB1B type I restriction-modification system me... 296 2e-78 UniRef50_C5S255 Type I restriction-modification system n=2 Tax=A... 295 2e-78 UniRef50_D1X0A9 N-6 DNA methylase n=2 Tax=Bacteria RepID=D1X0A9_... 295 2e-78 UniRef50_B1VEP0 Type I restriction-modification system, methyltr... 295 2e-78 UniRef50_B2UNL2 Type I restriction-modification system, M subuni... 295 3e-78 UniRef50_C4Z2E8 Type I restriction enzyme M protein n=4 Tax=Firm... 295 3e-78 UniRef50_C7NP01 N-6 DNA methylase n=2 Tax=Halobacteriaceae RepID... 295 4e-78 UniRef50_Q2KZB8 Restriction-modification system, modification (M... 295 4e-78 UniRef50_Q2FXD0 Type I restriction-modification system, M subuni... 294 5e-78 UniRef50_Q8DGT5 Type I site-specific deoxyribonuclease modificat... 294 6e-78 UniRef50_C6A4W7 Type I restriction-modification system methyltra... 293 1e-77 UniRef50_Q3AQE5 Type I restriction modification enzyme methylase... 292 2e-77 UniRef50_UPI000190A448 hypothetical protein Salmonelentericaente... 292 3e-77 UniRef50_C6P389 N-6 DNA methylase n=1 Tax=Sideroxydans lithotrop... 292 3e-77 UniRef50_UPI0001C37526 type I restriction-modification system me... 291 4e-77 UniRef50_A0QMK9 Type I restriction-modification system, M subuni... 291 5e-77 UniRef50_C8W944 N-6 DNA methylase n=1 Tax=Atopobium parvulum DSM... 291 6e-77 UniRef50_Q4A128 Putative type I restriction-modification system ... 290 1e-76 UniRef50_B3EE94 N-6 DNA methylase n=3 Tax=Bacteria RepID=B3EE94_... 290 1e-76 UniRef50_B4VZI3 N-6 DNA Methylase family n=2 Tax=Bacteria RepID=... 289 2e-76 UniRef50_C9KRW2 Type I restriction-modification system, M subuni... 289 2e-76 UniRef50_D2MJZ6 Type I restriction-modification system, M subuni... 289 2e-76 UniRef50_B7KF58 N-6 DNA methylase n=4 Tax=Bacteria RepID=B7KF58_... 289 2e-76 UniRef50_A4CI92 Type I restriction-modification system DNA methy... 289 2e-76 UniRef50_Q60297 Putative type I restriction enzyme MjaXP M prote... 288 2e-76 UniRef50_B5ZAK9 Type I restriction enzyme n=13 Tax=Mycoplasmatac... 288 3e-76 UniRef50_C2E8R1 Site-specific DNA-methyltransferase n=15 Tax=Fir... 288 5e-76 UniRef50_Q47GH6 N-6 DNA methylase n=13 Tax=cellular organisms Re... 287 5e-76 UniRef50_A9B990 N-6 DNA methylase n=2 Tax=Chloroflexi (class) Re... 287 9e-76 UniRef50_Q57168 Putative type I restriction enzyme HindVIIP M pr... 287 1e-75 UniRef50_Q31PC9 Type I restriction-modification n=27 Tax=cellula... 286 1e-75 UniRef50_Q47282 Type I restriction enzyme EcoEI M protein n=110 ... 285 2e-75 UniRef50_Q11PS3 Type I restriction-modification system, M subuni... 285 3e-75 UniRef50_A5GB18 N-6 DNA methylase n=2 Tax=Bacteria RepID=A5GB18_... 285 3e-75 UniRef50_D2NY13 Type I restriction enzyme M protein n=5 Tax=List... 283 8e-75 UniRef50_A0KWT9 N-6 DNA methylase n=5 Tax=Bacteria RepID=A0KWT9_... 283 1e-74 UniRef50_C7NHN8 Type I restriction-modification system methyltra... 282 2e-74 UniRef50_B2A7T0 N-6 DNA methylase n=13 Tax=Bacteria RepID=B2A7T0... 282 2e-74 UniRef50_A5VLF8 N-6 DNA methylase n=17 Tax=Bacteria RepID=A5VLF8... 282 3e-74 UniRef50_B9XME0 N-6 DNA methylase n=1 Tax=bacterium Ellin514 Rep... 280 7e-74 UniRef50_C7RVC4 N-6 DNA methylase n=2 Tax=Bacteria RepID=C7RVC4_... 280 1e-73 UniRef50_C7RQC1 N-6 DNA methylase n=1 Tax=Candidatus Accumulibac... 280 1e-73 UniRef50_C7NM08 Type I restriction-modification system methyltra... 279 1e-73 UniRef50_UPI000038E019 type I restriction-modification system me... 278 3e-73 UniRef50_C5ZY48 Type I restriction-modification system, M subuni... 278 3e-73 UniRef50_B0S3L0 Type I restriction-modification system DNA methy... 278 4e-73 UniRef50_C6WNK0 N-6 DNA methylase n=5 Tax=Actinomycetales RepID=... 278 4e-73 UniRef50_A6TVC2 N-6 DNA methylase n=4 Tax=Bacteria RepID=A6TVC2_... 277 6e-73 UniRef50_C7BP30 Type I restriction enzyme, modification subunit ... 277 7e-73 UniRef50_B7KLE1 N-6 DNA methylase n=1 Tax=Cyanothece sp. PCC 742... 277 9e-73 UniRef50_C9NJI6 N-6 DNA methylase n=1 Tax=Streptomyces flavogris... 276 1e-72 UniRef50_A6TNL6 Type I restriction-modification system, M subuni... 276 2e-72 UniRef50_C0W5F1 Type I restriction-modification system methyltra... 276 2e-72 UniRef50_B2VGL9 Type I restriction-modification system, M subuni... 276 2e-72 UniRef50_A3D8X6 Type I restriction-modification system, M subuni... 275 3e-72 UniRef50_B3EKI4 N-6 DNA methylase n=1 Tax=Chlorobium phaeobacter... 274 6e-72 UniRef50_A3RQ90 Type I restriction-modification system methylati... 274 7e-72 UniRef50_C4WKW1 Type I restriction enzyme EcoEI specificity prot... 273 8e-72 UniRef50_D2NT11 Type I restriction-modification system methyltra... 273 1e-71 UniRef50_B7K553 N-6 DNA methylase n=13 Tax=cellular organisms Re... 272 2e-71 UniRef50_UPI0001B4C614 type I restriction-modification system, M... 272 2e-71 UniRef50_Q3SFH7 Type I restriction-modification system methyltra... 271 4e-71 UniRef50_Q47163 Type I restriction enzyme EcoprrI M protein n=13... 271 5e-71 UniRef50_O27025 Type I restriction modification enzyme, subunit ... 271 6e-71 UniRef50_A6W079 N-6 DNA methylase n=16 Tax=Bacteria RepID=A6W079... 270 8e-71 UniRef50_A5GE24 N-6 DNA methylase n=13 Tax=Bacteria RepID=A5GE24... 270 1e-70 UniRef50_B8KQ49 Type I restriction-modification system, M subuni... 269 2e-70 UniRef50_C5VLJ5 N-6 DNA methylase n=1 Tax=Prevotella melaninogen... 269 2e-70 UniRef50_A2TPX2 Type I restriction modification system M subunit... 269 2e-70 UniRef50_A5WF32 N-6 DNA methylase n=11 Tax=Proteobacteria RepID=... 269 2e-70 UniRef50_Q65QI8 HsdM protein n=8 Tax=Proteobacteria RepID=Q65QI8... 268 3e-70 UniRef50_Q1Q861 N-6 DNA methylase n=1 Tax=Psychrobacter cryohalo... 268 3e-70 UniRef50_B1ZYW9 N-6 DNA methylase n=31 Tax=cellular organisms Re... 268 3e-70 UniRef50_D1SQT0 N-6 DNA methylase n=1 Tax=Acidovorax avenae subs... 268 4e-70 UniRef50_C6CR27 N-6 DNA methylase n=1 Tax=Dickeya zeae Ech1591 R... 268 5e-70 UniRef50_Q3J7Q6 N-6 DNA methylase n=7 Tax=Bacteria RepID=Q3J7Q6_... 268 5e-70 UniRef50_A0YWS1 Type I restriction-modification system methyltra... 267 5e-70 UniRef50_B1VGZ7 Type I restriction-modification system, methyltr... 267 6e-70 UniRef50_A8ZYK3 N-6 DNA methylase n=1 Tax=Desulfococcus oleovora... 267 6e-70 UniRef50_C0E6A6 Putative uncharacterized protein n=2 Tax=Coryneb... 267 8e-70 UniRef50_Q5NWK9 Type I restriction-modification system (Specific... 266 1e-69 UniRef50_C6BRN9 N-6 DNA methylase n=26 Tax=Bacteria RepID=C6BRN9... 266 1e-69 UniRef50_C8RRG5 Type I restriction-modification system, M subuni... 266 2e-69 UniRef50_C3NN83 N-6 DNA methylase n=1 Tax=Sulfolobus islandicus ... 266 2e-69 UniRef50_Q12V00 N-6 DNA methylase n=24 Tax=cellular organisms Re... 266 2e-69 UniRef50_Q5HSN6 Type I restriction-modification system, M subuni... 265 3e-69 UniRef50_A1BH53 N-6 DNA methylase n=4 Tax=Bacteria RepID=A1BH53_... 264 5e-69 UniRef50_C5RYW3 Type I restriction-modification system methyltra... 263 8e-69 UniRef50_C6MCS3 N-6 DNA methylase n=2 Tax=Proteobacteria RepID=C... 263 1e-68 UniRef50_C9KLJ9 Type I restriction-modification system, M subuni... 262 2e-68 UniRef50_A1TSH9 N-6 DNA methylase n=4 Tax=cellular organisms Rep... 261 5e-68 UniRef50_Q7NAH5 HsdM n=1 Tax=Mycoplasma gallisepticum RepID=Q7NA... 260 1e-67 UniRef50_B4RYU9 Type I restriction-modification system methyltra... 259 2e-67 UniRef50_B0VF74 Type I restriction-modification system methyltra... 258 3e-67 UniRef50_A7IDE4 N-6 DNA methylase n=3 Tax=Proteobacteria RepID=A... 258 3e-67 UniRef50_B4S214 Type I restriction-modification system methyltra... 258 4e-67 UniRef50_C7P6B0 N-6 DNA methylase n=1 Tax=Methanocaldococcus fer... 258 5e-67 UniRef50_B0BR03 Type I restriction-modification system M subunit... 257 6e-67 UniRef50_C8W115 Type I restriction-modification system, M subuni... 257 9e-67 UniRef50_A7BWE8 Type I restriction enzyme StySPI M protein n=1 T... 256 2e-66 UniRef50_P75436 Putative type I restriction enzyme MpnORFDP M pr... 255 4e-66 UniRef50_D2QLF2 Site-specific DNA-methyltransferase (Adenine-spe... 254 7e-66 UniRef50_A8ZRN8 N-6 DNA methylase n=14 Tax=cellular organisms Re... 253 1e-65 UniRef50_B3ENS7 N-6 DNA methylase n=2 Tax=cellular organisms Rep... 252 2e-65 UniRef50_B2IAD6 N-6 DNA methylase n=19 Tax=cellular organisms Re... 252 2e-65 UniRef50_Q3M7D1 N-6 DNA methylase n=5 Tax=Bacteria RepID=Q3M7D1_... 251 7e-65 UniRef50_D1VS23 Type I restriction-modification system methyltra... 249 2e-64 UniRef50_C3XHF2 Type I restriction-modification system M subunit... 249 2e-64 UniRef50_C9MRT4 Type I restriction-modification system, M subuni... 248 3e-64 UniRef50_A3J6X4 Type I restriction-modification n=1 Tax=Flavobac... 248 4e-64 UniRef50_C9L2F5 Type I restriction-modification system, M subuni... 247 6e-64 UniRef50_Q6IVN0 Predicted HsdM n=1 Tax=uncultured gamma proteoba... 246 1e-63 UniRef50_A6EUA8 Type I restriction-modification n=1 Tax=unidenti... 246 2e-63 UniRef50_Q10WB4 N-6 DNA methylase n=5 Tax=Bacteria RepID=Q10WB4_... 245 3e-63 UniRef50_B3EIH7 N-6 DNA methylase n=2 Tax=Chlorobium/Pelodictyon... 245 4e-63 UniRef50_Q31IU5 Type I restriction-modification system, M subuni... 243 1e-62 UniRef50_A6P0G2 Putative uncharacterized protein n=2 Tax=Bacteri... 241 4e-62 UniRef50_Q0HVT0 N-6 DNA methylase n=75 Tax=cellular organisms Re... 241 7e-62 UniRef50_C0XNK7 Type I restriction-modification system, methyltr... 240 1e-61 UniRef50_C7P732 N-6 DNA methylase n=1 Tax=Methanocaldococcus fer... 239 2e-61 UniRef50_B9M294 N-6 DNA methylase n=2 Tax=Proteobacteria RepID=B... 238 4e-61 UniRef50_A3DAQ0 N-6 DNA methylase n=1 Tax=Shewanella baltica OS1... 238 4e-61 UniRef50_C0MH51 Putative type I restriction enzyme methylase pro... 238 6e-61 UniRef50_Q5YY36 Putative restriction-modification system endonuc... 238 6e-61 UniRef50_Q4KCG2 Type I restriction-modification system, M subuni... 236 1e-60 UniRef50_B0T4G1 N-6 DNA methylase n=2 Tax=Bacteria RepID=B0T4G1_... 234 7e-60 UniRef50_A6GSS6 Type I restriction-modification system methyltra... 234 8e-60 UniRef50_B0V9R4 Putative uncharacterized protein n=2 Tax=Acineto... 233 1e-59 UniRef50_A5IZ14 Modification (Methylase) protein of type Irestri... 233 1e-59 UniRef50_A8KXL5 N-6 DNA methylase n=1 Tax=Frankia sp. EAN1pec Re... 233 1e-59 UniRef50_C9RQV8 N-6 DNA methylase n=4 Tax=Bacteria RepID=C9RQV8_... 233 2e-59 UniRef50_A9NHP1 Type I restriction enzyme, M protein n=9 Tax=cel... 232 2e-59 UniRef50_A0Q1H9 Type I restriction-modification system DNA methy... 232 3e-59 UniRef50_B0VGE9 Restriction modification system DNA specificity ... 231 5e-59 UniRef50_C2EIH9 Restriction-modification protein n=1 Tax=Lactoba... 231 5e-59 UniRef50_Q7X0F3 M.AhdI n=1 Tax=Aeromonas hydrophila RepID=Q7X0F3... 230 8e-59 UniRef50_B0JHK8 Type I restriction enzyme EcoEI M protein homolo... 230 8e-59 UniRef50_C3RBV5 N-6 DNA methylase n=5 Tax=Bacteroidales RepID=C3... 230 1e-58 UniRef50_B9ACI4 Putative uncharacterized protein n=1 Tax=Methano... 229 2e-58 UniRef50_C8WH94 N-6 DNA methylase n=1 Tax=Eggerthella lenta DSM ... 229 2e-58 UniRef50_A8GYC6 Type I restriction-modification system methyltra... 227 8e-58 UniRef50_Q58617 Uncharacterized adenine-specific methylase MJ122... 227 9e-58 UniRef50_C7QWT4 Type III restriction protein res subunit n=1 Tax... 226 2e-57 UniRef50_O30381 N6 adenine methylation (M) subunit homolog n=4 T... 225 3e-57 UniRef50_A8UNU7 N-6 DNA methylase n=1 Tax=Flavobacteriales bacte... 225 3e-57 UniRef50_C3QS31 Type I restriction-modification system n=2 Tax=B... 225 5e-57 UniRef50_A8YEM4 Genome sequencing data, contig C300 n=4 Tax=Bact... 225 5e-57 UniRef50_UPI00017F5863 N-6 DNA methylase n=1 Tax=Clostridium dif... 224 6e-57 UniRef50_A6EJ97 Type I restriction-modification system methyltra... 224 7e-57 UniRef50_Q160U6 Type I restriction-modification system DNA methy... 223 9e-57 UniRef50_C8WMW5 N-6 DNA methylase n=3 Tax=Bacteria RepID=C8WMW5_... 223 1e-56 UniRef50_C8P6G6 Type I restriction-modification n=2 Tax=Bacteria... 222 2e-56 UniRef50_A9DR80 Restriction/modification methyltransferase n=2 T... 220 8e-56 UniRef50_B1A4M3 Type I restriction-modification system M-subunit... 219 2e-55 UniRef50_B0JQT9 Type I restriction enzyme EcoEI M protein n=1 Ta... 218 4e-55 UniRef50_C7IHQ9 N-6 DNA methylase n=1 Tax=Clostridium papyrosolv... 216 1e-54 UniRef50_Q6ZE83 Type I restriction-modification system M subunit... 216 2e-54 UniRef50_B3QZM0 Type I restriction-modification system methyltra... 216 2e-54 UniRef50_A6L5S5 Type I restriction-modification system M subunit... 215 3e-54 UniRef50_Q4HS21 Type I restriction-modification system, M subuni... 215 3e-54 UniRef50_C7N817 Type I restriction-modification system methyltra... 213 1e-53 UniRef50_C6QR93 N-6 DNA methylase n=1 Tax=Geobacillus sp. Y4.1MC... 213 2e-53 UniRef50_B4VWN4 N-6 DNA Methylase superfamily n=1 Tax=Microcoleu... 212 2e-53 UniRef50_D0I0N8 Type I restriction-modification system M subunit... 211 5e-53 UniRef50_C5DB05 N-6 DNA methylase n=1 Tax=Geobacillus sp. WCH70 ... 211 7e-53 UniRef50_C8MCW8 Predicted protein n=1 Tax=Staphylococcus aureus ... 211 7e-53 Sequences not found previously or not previously below threshold: >UniRef50_P08957 Type I restriction enzyme EcoKI M protein n=51 Tax=Bacteria RepID=T1MK_ECOLI Length = 529 Score = 547 bits (1408), Expect = e-154, Method: Composition-based stats. Identities = 529/529 (100%), Positives = 529/529 (100%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLK 60 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLK Sbjct: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLK 60 Query: 61 SRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAH 120 SRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAH Sbjct: 61 SRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAH 120 Query: 121 GKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAG 180 GKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAG Sbjct: 121 GKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAG 180 Query: 181 FLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDH 240 FLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDH Sbjct: 181 FLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDH 240 Query: 241 GGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETL 300 GGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETL Sbjct: 241 GGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETL 300 Query: 301 HPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 360 HPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG Sbjct: 301 HPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 360 Query: 361 TVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEW 420 TVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEW Sbjct: 361 TVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEW 420 Query: 421 SFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLP 480 SFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLP Sbjct: 421 SFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLP 480 Query: 481 EPDVLAAEAMGELVQALSELDALMRELGASDEADLQRQLLEEAFGGVKE 529 EPDVLAAEAMGELVQALSELDALMRELGASDEADLQRQLLEEAFGGVKE Sbjct: 481 EPDVLAAEAMGELVQALSELDALMRELGASDEADLQRQLLEEAFGGVKE 529 >UniRef50_C9P2L7 Type I restriction-modification system DNA-methyltransferase subunit M n=1 Tax=Vibrio metschnikovii CIP 69.14 RepID=C9P2L7_VIBME Length = 510 Score = 396 bits (1018), Expect = e-109, Method: Composition-based stats. Identities = 256/528 (48%), Positives = 345/528 (65%), Gaps = 36/528 (6%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLK 60 M ++++ K+W LC+ LR G++Y YV+EL+ LLFLK+ +E G E + +P+GYRW DL+ Sbjct: 1 MKQDNIIQKIWSLCNILRGDGITYYQYVSELSYLLFLKIAQENGSE-KLIPKGYRWVDLE 59 Query: 61 SRIGQEQLQFYRKMLVHLGED-DKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGA 119 S G L FY++ML HLG + ++V+A++ +T + + + A++ + ++W+ Sbjct: 60 SYKGDGLLGFYQEMLTHLGASVENEVVKAIYAFPTTVFSHSENLKAVIDGISKIEWH--- 116 Query: 120 HGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTA 179 +D FGD+Y GL+ K+A +T+SGAGQYFTPR L+ TI+ L++P E++QDPA G+ Sbjct: 117 -QVGKDGFGDVYSGLIDKSAQDTRSGAGQYFTPRSLVNTIVRLIQPNLGELIQDPATGSG 175 Query: 180 GFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLD 239 GFL+ AD Y++++ + G+E+ TRR+ LMN LH+++ N+ Sbjct: 176 GFLVSADSYIRNKYLREKYKANPPKYQ-------GVEIEKNTRRICLMNTFLHELDANII 228 Query: 240 HGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNI--TRTFVHPTSNKQLCFMQHII 297 +G A+ D L +A ++ NPPFG+ AG P NKQL F+QHI Sbjct: 229 YGDAL------TDDVAELAEADVIIANPPFGNKAGGQRPLRNDIPFPNVNKQLAFLQHIY 282 Query: 298 ETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFF 357 L PGGRAAVV+PDNVLFE G GT++RRDLM+KC+LHTILRLPTGIFYAQGV TNVLFF Sbjct: 283 LGLKPGGRAAVVLPDNVLFEAGVGTEVRRDLMNKCNLHTILRLPTGIFYAQGVNTNVLFF 342 Query: 358 TKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPF-------------TDEHLQPFERV 404 TKG+V + Q+++CT +VWVYDLRTNMPSFGKRTPF TD H+ FE+V Sbjct: 343 TKGSVKDKYQEESCTQNVWVYDLRTNMPSFGKRTPFGNSDIGFTPEELGTDPHMGAFEKV 402 Query: 405 YGEDPHGLSPRTEGEWSFNAEETEVADS--EENKNTDQHLATSRWRKFSREWIRTAKSDS 462 +G+ P G S RTEGE+SF A+E EV EEN+ D LA SRWR FSR+WI K DS Sbjct: 403 FGDKPDGTSKRTEGEFSFGAQEIEVDKDAVEENQRGDDRLAHSRWRCFSRKWIANTKGDS 462 Query: 463 LDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALMRELGAS 510 LDISWLKDK+SID L EPDVLA EA EL AL ELD L+ L + Sbjct: 463 LDISWLKDKNSIDVTGLSEPDVLAQEAKEELEAALRELDGLLTALEMN 510 >UniRef50_Q210J9 N-6 DNA methylase n=5 Tax=Proteobacteria RepID=Q210J9_RHOPB Length = 489 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 249/520 (47%), Positives = 315/520 (60%), Gaps = 46/520 (8%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLKS 61 D+VAKLW LC LRD GV+Y YV EL LLFLKM +ETG+E+ LP+GYRW L Sbjct: 3 TTTDIVAKLWSLCHVLRDDGVTYNEYVTELTFLLFLKMLEETGKESR-LPKGYRWAALAK 61 Query: 62 RIGQEQLQFYRKMLVHLGEDD--KKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGA 119 R G +QL +Y+++L+ LG+ + LV+A+F + T + +P + AL S++D LDW++ Sbjct: 62 REGLDQLDYYKRLLLDLGKPEVKDGLVRAIFTDAQTRLRKPTNLKALTSSIDQLDWFSAR 121 Query: 120 HGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTA 179 + G +YEGLL+KNA++ KSGAGQYFTPRPLI I+ L+KP E VQDPAAGTA Sbjct: 122 E----EGLGTLYEGLLEKNASDKKSGAGQYFTPRPLIDCIVRLMKPHVGETVQDPAAGTA 177 Query: 180 GFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLD 239 GF++ ADRY+K +T+DL L FQ H AF G ELVP T RL +MN LLH IEG Sbjct: 178 GFIVAADRYIKDRTDDLYKLPEQQVFFQRHHAFNGAELVPDTHRLCMMNLLLHGIEG--- 234 Query: 240 HGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRT----FVHPTSNKQLCFMQH 295 + L +TL DGE L KA ++ TNPPFG+ G TSNKQL F++H Sbjct: 235 ---GVELADTLSPDGERLSKADLILTNPPFGTKKGGGRPTRSDFSITADTSNKQLAFVEH 291 Query: 296 IIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVL 355 ++ L GGRAAVVVPDNVLFE G D+R LMD C LHTILRLPTGIFYAQGVKTNVL Sbjct: 292 VVRALKAGGRAAVVVPDNVLFEDNTGRDLRTWLMDLCSLHTILRLPTGIFYAQGVKTNVL 351 Query: 356 FFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPR 415 FF +G N T VWVYDLR NMP+FGK P T FE+ YG +P G + R Sbjct: 352 FFQRGKTDKAN-----TKTVWVYDLRANMPAFGKTRPLTAADFAEFEKAYGSNPAGSAKR 406 Query: 416 TEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSID 475 + RWR F+R+ I+ D+LDISWL+D + Sbjct: 407 KDQGEE-----------------------GRWRGFTRDQIKARN-DNLDISWLRDTEVEA 442 Query: 476 ADSLPEPDVLAAEAMGELVQALSELDALMRELGASDEADL 515 + L EP+ +AA +G L AL E++ L EL + D Sbjct: 443 EEQLTEPEDIAAAIIGHLKAALEEIETLSEELESPSNKDA 482 >UniRef50_C4KDM7 Site-specific DNA-methyltransferase (Adenine-specific) n=9 Tax=Bacteria RepID=C4KDM7_THASP Length = 530 Score = 384 bits (986), Expect = e-105, Method: Composition-based stats. Identities = 247/537 (45%), Positives = 320/537 (59%), Gaps = 42/537 (7%) Query: 5 DLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAE---------------Y 49 D+ AKLW LC LRD GV+Y Y++EL LLFLKM KETGQE Sbjct: 9 DIGAKLWSLCHVLRDDGVTYHQYLSELTYLLFLKMMKETGQEERLRIWKAKDKKQGSPKE 68 Query: 50 LPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSN 109 G RWDDL ++L Y++ML+ G + VQ ++ N +T IT+P ++ LV++ Sbjct: 69 EQAGTRWDDLLGASAPDRLDLYKEMLLDYGLHGRGAVQEIYANANTFITKPATLSKLVTD 128 Query: 110 MDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPRE 169 +D LDWY RDD GD+YE LL++NA E KSGAGQYFTPR LI +I+ ++KPQ + Sbjct: 129 IDRLDWY----SVDRDDLGDLYEDLLERNAGEKKSGAGQYFTPRHLIDSIVSVMKPQLGD 184 Query: 170 VVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNC 229 V+QDPAAGT GFLI A+ Y++ D D L + Q H+ F G+ELV T RLALMN Sbjct: 185 VIQDPAAGTCGFLIAANNYLRQHN-DFDSLSDEAQRKYRHQTFHGMELVQDTHRLALMNM 243 Query: 230 LLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGT--NITRTFVHPTSN 287 LLH IEG + +G + D + LP A ++ +NPPFG+ G TSN Sbjct: 244 LLHGIEGGVTYGDTL------SDDHKGLPPATLILSNPPFGTKKGGGLPTRGDLTFETSN 297 Query: 288 KQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYA 347 KQ F+QHI L PGGRAAVV+PDNVLFE G DIRRDLMDKC+LHTILRLPTGIFYA Sbjct: 298 KQFAFLQHIYRALKPGGRAAVVLPDNVLFESNIGADIRRDLMDKCNLHTILRLPTGIFYA 357 Query: 348 QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGE 407 QGVKTNVLFFT+G + DK T +VWVYD+R NMP+FGKRTPFT ++ + Sbjct: 358 QGVKTNVLFFTRG-----DTDKGNTKEVWVYDMRANMPAFGKRTPFTRDY-------FRT 405 Query: 408 DPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISW 467 P + + ++ RWR+F+RE I + DSLDISW Sbjct: 406 PPDVPASQPRDKFEDVFGSDPRGGPAALAARQDTGEAGRWRRFTREQI-AQRGDSLDISW 464 Query: 468 LKDKDSIDADS-LPEPDVLAAEAMGELVQALSELDALMRELGASDEADLQRQLLEEA 523 LKD + D +P +LA A+ EL A+SEL +L+ ELG +A L+ + +++ Sbjct: 465 LKDSGAASTDQSRDDPSLLAGLALKELNAAVSELRSLLEELGEDPDAVLEAVVADDS 521 >UniRef50_B0VPS9 DNA methylase M, host modification n=3 Tax=Proteobacteria RepID=B0VPS9_ACIBS Length = 509 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 244/503 (48%), Positives = 337/503 (66%), Gaps = 34/503 (6%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLK 60 M + ++ K+W LC+ LR G++Y YV+EL+ LLFLK+ +E G E +PEGYRW DL+ Sbjct: 1 MKQDTVIQKIWSLCNILRGDGITYYQYVSELSYLLFLKIAQENGSEI-LIPEGYRWADLE 59 Query: 61 SRIGQEQLQFYRKMLVHLGED-DKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGA 119 + + L FY++ML HLG + + ++++ ++ +T + + + A++ + ++W+ Sbjct: 60 AHEEEGLLGFYQEMLTHLGANVENEVIRDIYAFPTTVFSHSENLKAVIDGISEIEWH--- 116 Query: 120 HGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTA 179 +D FGD+Y GL+ K+A +T+SGAGQYFTPR LI +II L++P +++QDPA G+ Sbjct: 117 -QVGKDGFGDLYSGLIDKSAQDTRSGAGQYFTPRSLINSIIRLIQPNLGDLIQDPATGSG 175 Query: 180 GFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLD 239 GFL+ AD Y++++++ + + G+E+ TRR+ LMN LH ++ N+ Sbjct: 176 GFLVSADSYIRTKSSQEEYQASPPKYQ-------GVEIEKNTRRICLMNTFLHHLDANIV 228 Query: 240 HGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNI--TRTFVHPTSNKQLCFMQHII 297 +G A+ D L I+ NPPFG+ AG+ P +NKQL F+QHI Sbjct: 229 YGDAL------TDDVLKLDDPDIILANPPFGNKAGSQRPLRSDLPFPNTNKQLAFLQHIY 282 Query: 298 ETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFF 357 +L GGRAAVV+PDNVLFE G GTD+R+DLM+KC+LHTILRLPTGIFYAQGVKTNVLFF Sbjct: 283 LSLKAGGRAAVVLPDNVLFESGIGTDVRKDLMNKCNLHTILRLPTGIFYAQGVKTNVLFF 342 Query: 358 TKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPF-------------TDEHLQPFERV 404 TKG+ + +Q +NCT++VW+YDLRTNMPSFGKRTPF TD HL FERV Sbjct: 343 TKGSTKDKHQQENCTENVWIYDLRTNMPSFGKRTPFGNADIGFLPEDFGTDSHLGAFERV 402 Query: 405 YGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLD 464 +G++P+G S RTEGE+SFNA E EV EN+N D+ LA SRWR FSREWI K DSLD Sbjct: 403 FGDNPNGTSKRTEGEYSFNALEAEVDKELENENIDEKLAHSRWRCFSREWIAEYKGDSLD 462 Query: 465 ISWLKDKDSIDADSLPEPDVLAA 487 ISWLKDK+SIDAD+L EP +L Sbjct: 463 ISWLKDKESIDADNLTEPAILVN 485 >UniRef50_D1C5W3 N-6 DNA methylase n=39 Tax=cellular organisms RepID=D1C5W3_SPHTD Length = 507 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 200/530 (37%), Positives = 269/530 (50%), Gaps = 58/530 (10%) Query: 4 NDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA----EYLPEGYRWDDL 59 +V +LW C+ LRD G+SY +YV +L LLFLKM E QE +PEGY W L Sbjct: 8 QQIVQRLWSYCNVLRDDGLSYGDYVEQLTYLLFLKMAHEQTQEPWNRPSPVPEGYDWPSL 67 Query: 60 KSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALV-SNMDSLDWYNG 118 +R G E YR +L LG ++ +FH I +P ++ L+ +D W Sbjct: 68 LARDGDELETHYRHLLEELGRQ-PGMLGLIFHKAQNKIQDPAKLRRLIVDLIDREQWM-- 124 Query: 119 AHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGT 178 D G YEGLL+KNA + K GAGQYFTPRPLI+ I+ +++PQP E + DPA GT Sbjct: 125 --VLGTDAKGATYEGLLEKNARDVKGGAGQYFTPRPLIQAIVDVMRPQPGETICDPACGT 182 Query: 179 AGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI---E 235 GFL+ A + + LD + + A G+E+V RL MN LLH + Sbjct: 183 GGFLLAAHNSIVERYP---HLDPEQRKHLKLHALRGVEIVDSVTRLCAMNLLLHGVGPGP 239 Query: 236 GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAG---------------TNITRT 280 D +R G++L S +V TNPPFG + T + Sbjct: 240 AEADIEPPVRTGDSLNS--APSDHFDVVLTNPPFGRKSSVLVVNEEGQQEREALTVVRED 297 Query: 281 FVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRL 340 F TSNKQL F+QH+ L GRAAVVVPDNVLFEGG G IRR L+ +C +HT+LRL Sbjct: 298 FWATTSNKQLNFVQHVKSLLKIHGRAAVVVPDNVLFEGGAGETIRRKLLQECDVHTLLRL 357 Query: 341 PTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQP 400 PTGIFYAQGVK NVLFF + +++ T +W+YDLRTN K P L Sbjct: 358 PTGIFYAQGVKANVLFFDRKPP----REQPWTSQLWIYDLRTNKHFTLKTKPLQRSDLDE 413 Query: 401 FERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKS 460 F + + T EEN + RWR FS + + Sbjct: 414 FVACFNPENRHQRTPTWS--------------EENPD-------GRWRAFSYDELIQRDK 452 Query: 461 DSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALMRELGAS 510 +LDI WLKDK D ++L +PD +AA+ + +L AL E + ++ +L + Sbjct: 453 VNLDIFWLKDKSLEDGENLGDPDEIAADIVEDLRAALEEFETILADLAPN 502 >UniRef50_C6CZ62 N-6 DNA methylase n=16 Tax=Bacteria RepID=C6CZ62_PAESJ Length = 494 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 241/522 (46%), Positives = 308/522 (59%), Gaps = 50/522 (9%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLK 60 M N D+V KLW LC+ LRD G++Y YV EL +LFLKM KET E LPE YRWD L Sbjct: 1 MGNQDIVQKLWNLCNVLRDDGITYHQYVTELTYVLFLKMMKETDNEG-ILPEQYRWDSLT 59 Query: 61 SRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAH 120 R G Q YR++L+ LG + ++ ++ N ++ I EPK + +++++D LDWY+ Sbjct: 60 ERHGMALQQHYRQLLLDLGNQGNETIKQIYMNATSNINEPKNLEKIITSIDQLDWYSAKE 119 Query: 121 GKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAG 180 + GD+YEGLL+KNA+ETKSGAGQYFTPRPLI I L+ PQP E DPAAGT G Sbjct: 120 ----EGLGDLYEGLLEKNASETKSGAGQYFTPRPLIDVITKLVDPQPGERCNDPAAGTFG 175 Query: 181 FLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDH 240 F+I ADR+V++ T+D DL +FQ H+AF G+ELV T RLA+MN +LHDI G + Sbjct: 176 FMIAADRHVRNNTDDYFDLGEKEAEFQKHQAFTGVELVKDTHRLAMMNAMLHDIHGEIIL 235 Query: 241 GGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNI--TRTFVHPTSNKQLCFMQHIIE 298 G + DG NL ++ TNPPFG+ G T+NKQL F+QHI Sbjct: 236 GDTL------SDDGTNLKNFDVILTNPPFGTKQGGERPTRDDLTFATTNKQLNFLQHIYR 289 Query: 299 TLHPGG--RAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLF 356 L G RAAV++PDNVLFE G GT IR DLMDKC+L+TILRLPTGIFYAQGVKTNVLF Sbjct: 290 ALKANGKARAAVILPDNVLFESGVGTKIRADLMDKCNLNTILRLPTGIFYAQGVKTNVLF 349 Query: 357 FTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRT 416 FT+ DK+ T ++WVYDLRTNMPSFGKR P T H F Y + Sbjct: 350 FTR-----EKTDKDSTKNIWVYDLRTNMPSFGKRNPLTVSHFDAFVAAYMAEDRTKVED- 403 Query: 417 EGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDA 476 RW F+RE IR DSLDI + D+ Sbjct: 404 ----------------------------ERWNVFTREDIRKKD-DSLDIGLIADESLSAY 434 Query: 477 DSLPEPDVLAAEAMGELVQALSELDALMRELGASDEADLQRQ 518 D+LP+P A +AM +L +AL+ L ++ EL A + + + Sbjct: 435 DNLPDPIDSAEDAMVKLEEALALLGEVVTELKAIETKPVSYE 476 >UniRef50_D0LNE1 Type I restriction-modification system, M subunit n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LNE1_HALO1 Length = 633 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 123/539 (22%), Positives = 197/539 (36%), Gaps = 86/539 (15%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA------------- 47 + L LW D LR G + +Y N + LLFLK + +E Sbjct: 138 LTTAQLERYLWAAADILR-GQIDSSDYKNYIFGLLFLKRLSDVFEEEAEKLTAEGLPAAV 196 Query: 48 ---------EYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKL---VQAVFHNVS- 94 ++PE RW ++ +++ + L E + L ++ + N Sbjct: 197 AWNDPDEHQFFVPERARWSEI-AKVATGIGEALNVACAALEEANSGLDGVLEGIDFNDER 255 Query: 95 ---TTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFT 151 T + LV + L N A D G YE L++K A++ G+++T Sbjct: 256 RLGNTKNRDAVLARLVQHFGQLSLKN-ADLSEPDMLGRAYEYLIEKFADDAGKKGGEFYT 314 Query: 152 PRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRA 211 PR +++ I+ LL P + DP G+ G LIE YV+ Q + +L Sbjct: 315 PRKVVQLIVELLAPTAGMRISDPTCGSGGMLIECAHYVERQGGNPRNL-----------T 363 Query: 212 FIGLELVPGTRRLALMNCLLHDIE-GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFG 270 G E GT + MN LLH + ++ G IR L D L V NPPF Sbjct: 364 LHGQEKNLGTWAICKMNMLLHGLPSARIEKGDTIRDPRLL--DNGALLVYDRVIANPPFS 421 Query: 271 SAAG---------TNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKG 321 R + P + L F+QH++ TL+ GGR VV+P VLF G Sbjct: 422 LDEWGVEVAEGDGHGRFRFGLPPKTKGDLAFLQHMVATLNEGGRLGVVMPHGVLFRGSSE 481 Query: 322 TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLR 381 IR L+ + ++ L +FY G+ VL ++ + V D Sbjct: 482 GRIRSKLLAEDLFEAVIGLAPNLFYGTGIPAAVLVLSRDKA------RARKGKVLFVDAS 535 Query: 382 TNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQH 441 + + + D H+ R + E + V E + + + Sbjct: 536 SEFEAGSAQNYLRDVHVTKIARAFHE------------YRDVERFARVVPLAEIEQNEGN 583 Query: 442 LATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSEL 500 L SR+ S+E + +D++ L E + EA + + L EL Sbjct: 584 LNISRYVDTSQEE------ERIDVA-------AAVARLRELEAARDEAEATMHRFLEEL 629 >UniRef50_C3MFA0 N-6 DNA methylase n=5 Tax=Proteobacteria RepID=C3MFA0_RHISN Length = 511 Score = 367 bits (941), Expect = e-100, Method: Composition-based stats. Identities = 246/549 (44%), Positives = 316/549 (57%), Gaps = 71/549 (12%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLK 60 MN N +V KLW+LC LR G++YQ YV EL LLFLKM E +E+ LPE RW+DL Sbjct: 1 MNANAIVQKLWRLCTVLRKDGITYQQYVTELTYLLFLKMMAERNRESGSLPETMRWEDLV 60 Query: 61 SRIGQEQLQFYRKMLVHLG-------------------------------EDDKKLVQAV 89 G +L+ YR+ LV LG +VQ + Sbjct: 61 QANGLAKLELYRRTLVTLGTVSTRLGKDDALVLPPGDNATPDERKRYVDARPLPDMVQEI 120 Query: 90 FHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQY 149 F N ST I EP+ +T LV+ +D LDW++ RD FGD+YEGLLQKNA ETK GAGQY Sbjct: 121 FDNASTFIREPQNLTTLVTAIDELDWFSE----ERDQFGDLYEGLLQKNAEETKRGAGQY 176 Query: 150 FTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIH 209 FTPR LI+ ++ L++PQP EV+QDPA GT GFLI AD Y++++T++ DL Q+FQ Sbjct: 177 FTPRVLIRVLVRLMQPQPGEVIQDPAGGTGGFLIAADHYMRARTDNYFDLGEKEQEFQKR 236 Query: 210 RAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPF 269 AF G+E VPGT RL LMN LHDI+ + LG+TL G+ L +A+++ TNPPF Sbjct: 237 HAFHGMENVPGTLRLLLMNLYLHDIDS-----DHVDLGDTLSDKGKGLGRANLILTNPPF 291 Query: 270 GSAAGTNITRTFVHPT--SNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRD 327 G A G S+ QL F++H I L PGGRAA+VVPDNVLFE G+G +R+ Sbjct: 292 GPAGGAPTRDDLSVTATVSSYQLPFVEHCIRALKPGGRAAIVVPDNVLFEDGRGRQLRQM 351 Query: 328 LMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSF 387 +MD C LHTILRLPTGIFYAQGVKTNV+F T+G N T W+YDLR MP F Sbjct: 352 MMDWCDLHTILRLPTGIFYAQGVKTNVIFLTRGKTETGN-----TKATWIYDLRAQMPKF 406 Query: 388 GKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRW 447 GK TP T+ H + FE+ +G P+G + RW Sbjct: 407 GKTTPLTEAHFEGFEKAFGTSPYGKERVKDEGE-----------------------VGRW 443 Query: 448 RKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALMREL 507 R+F RE I A+ D+LDI+WL++ D D L EP+ +AA +G L A E++ALM EL Sbjct: 444 REFRREEI-AARGDNLDIAWLREADDEAEDGLTEPEDIAAAILGHLQAATLEIEALMAEL 502 Query: 508 GASDEADLQ 516 G + Sbjct: 503 GDELSEAAE 511 >UniRef50_UPI0001C36A8B N-6 DNA methylase n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36A8B Length = 471 Score = 363 bits (931), Expect = 1e-98, Method: Composition-based stats. Identities = 237/513 (46%), Positives = 305/513 (59%), Gaps = 51/513 (9%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLK 60 MN ++V+KLW LC+ LRD G++Y YV EL +LFLKM KETG E E +PE YRWD L Sbjct: 1 MNTQEIVSKLWNLCNVLRDDGITYHQYVTELTYILFLKMAKETGVE-EQIPEEYRWDCLV 59 Query: 61 SRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAH 120 S+ G E ++YR++L +LGE+ +Q ++ +T I EPK + +++ +D LDWY+ Sbjct: 60 SKSGMELRRYYRELLNYLGEECTGRIQEIYQGAATNIDEPKNLEKIITAIDKLDWYSAKE 119 Query: 121 GKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAG 180 + G++YEGLL+KNANE KSGAGQYFTPR LI ++ L+KPQ E DPA GT G Sbjct: 120 ----EGLGNLYEGLLEKNANEKKSGAGQYFTPRVLIDVMVRLMKPQVGERCNDPACGTFG 175 Query: 181 FLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDH 240 F+I AD+YVK D + D +FQ AF G ELV T RLALMN +LHDIEG + Sbjct: 176 FMIAADKYVKEHN-DFWGISADLAEFQHKEAFTGCELVHETHRLALMNAMLHDIEGQIML 234 Query: 241 GGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNI--TRTFVHPTSNKQLCFMQHIIE 298 + G+ L +V TNPPFG+ G FV TSNKQL F+QHI Sbjct: 235 ADTLSNA------GKQLKGYDLVLTNPPFGTEKGGERATRDDFVFSTSNKQLNFLQHIYR 288 Query: 299 TLHPGG--RAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLF 356 +L P G RAAVV+PDNVLF G G IR DLM++C+LHT+LRLPTGIFYAQGVKTNVLF Sbjct: 289 SLKPNGKARAAVVLPDNVLFADGDGERIRVDLMERCNLHTVLRLPTGIFYAQGVKTNVLF 348 Query: 357 FTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRT 416 FT+GT DK+ T +VW YDLRTNMPS GK P EH FE+ Y D Sbjct: 349 FTRGTT-----DKDNTKEVWFYDLRTNMPSLGKTNPLKTEHFADFEKAYEADDR------ 397 Query: 417 EGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDA 476 + + RW F+RE I K +SLD+ ++D +D Sbjct: 398 -----------------------RAVNDERWSVFTREEIVA-KGNSLDLGLIRDDSVLDY 433 Query: 477 DSLPEPDVLAAEAMGELVQALSELDALMRELGA 509 + LP+P A EA +L +A+ L ++ EL A Sbjct: 434 NDLPDPIESAEEAAAQLEEAVDLLKRVINELKA 466 >UniRef50_A1T135 N-6 DNA methylase n=22 Tax=Actinomycetales RepID=A1T135_MYCVP Length = 544 Score = 362 bits (929), Expect = 2e-98, Method: Composition-based stats. Identities = 110/545 (20%), Positives = 192/545 (35%), Gaps = 68/545 (12%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA-------------- 47 +L LWK D LR G +S Y + + L+FLK + E Sbjct: 17 TMKELKDTLWKAADKLR-GSLSASQYKDVILGLVFLKYVSDAYDERREAIRTELEADGLD 75 Query: 48 -------------------EYLPEGYRWDDLKSRIG----------QEQLQFYRKMLVHL 78 +P G RW L + Q + + + Sbjct: 76 AEQIEDLIEDPEEYQGYGVFVVPPGARWKFLAENAKGLPAAGGEPAKNIGQLIDEAMDAV 135 Query: 79 GEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKN 138 + + L + + + +++ L+ +S + G++RD G++YE L Sbjct: 136 MKANPTLQGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGDGRARDLMGEVYEYFLGNF 195 Query: 139 ANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDD 198 A G++FTP ++K I+ +L+P V DP G+ G ++ ++++ D Sbjct: 196 ARAEGKRGGEFFTPPSVVKVIVEVLEPSRG-RVYDPCCGSGGMFVQTEKFIYEHDGDP-- 252 Query: 199 LDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLP 258 A G E + T R+A MN +H I+ + G R G+T D Sbjct: 253 ---------KEIAVYGQESIEETWRMAKMNLAIHGID---NKGLGARWGDTFARDQHPDV 300 Query: 259 KAHIVATNPPFGSAAG-----TNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN 313 + V NPPF R V P +N ++QHI+ L GG+A VV+ + Sbjct: 301 QMDYVLANPPFNIKDWARNEEDARWRFGVPPANNANYAWIQHILYKLASGGKAGVVMANG 360 Query: 314 VL-FEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCT 372 + DIR +++ + ++ LPT +F + G+ V FF K A + + Sbjct: 361 SMSSNSNGEGDIRAQIVEADLVSCMIALPTQLFRSTGIPVCVWFFAKDKTAGKQGSVDRS 420 Query: 373 DDVWVYDLRTNMPSFGK-RTPFTDEHLQPFERVYGEDPHGLSPRTEG-EWSFNAEETEVA 430 V D R + +D+ + + S +G + + A Sbjct: 421 GQVLFIDAREMGYMVDRAERALSDDDIVKIGDTFHAWRGSASAAAKGVVYQDVPGFCKSA 480 Query: 431 DSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAM 490 E K D L R+ + D I+ LK + D + + E + Sbjct: 481 TLAEIKAADYALTPGRYVGAAAVEDDGEPIDE-KIARLKTELLAAFDESARLEKVVREQL 539 Query: 491 GELVQ 495 + Sbjct: 540 ERIDA 544 >UniRef50_A1WBU7 N-6 DNA methylase n=19 Tax=Bacteria RepID=A1WBU7_ACISJ Length = 500 Score = 361 bits (927), Expect = 3e-98, Method: Composition-based stats. Identities = 114/544 (20%), Positives = 199/544 (36%), Gaps = 88/544 (16%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA------------- 47 + + L + LW+ + LR G V ++ + LLF K + E Sbjct: 8 ITLSQLESHLWESANILR-GPVDAADFKTYIFPLLFFKRICDVWDEEYQEIVDETGDEQL 66 Query: 48 --------EYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITE 99 +PE W+D++++ ++ + + + + + VF + + + Sbjct: 67 AWFPESHRFQIPEDCHWNDVRTKAS-NVGTALQRAMREIEKANPDTLYGVFGDAQWSNKD 125 Query: 100 ---PKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLI 156 + L+ + L + N + D GD YE L++K A+ T AG+++TPR ++ Sbjct: 126 RLSDALLKDLIEHFSKLPFGN--KNVNSDLLGDAYEYLIKKFADATNKKAGEFYTPRSVV 183 Query: 157 KTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLE 216 + +I +L P+ E + DPA GT G L+ A ++VK Q D+ L G G E Sbjct: 184 RLMIDMLDPKEAETIYDPACGTGGMLLAAVQHVKEQHGDVKRLWGK---------LYGQE 234 Query: 217 LVPGTRRLALMNCLLHDI-EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFG-SAAG 274 T +A MN LH I + + G +R D L V NPPF G Sbjct: 235 KNLTTSSIARMNLFLHGIEDFQVVRGDTLRNPAFFEVD--RLATFDCVIANPPFSLEKWG 292 Query: 275 TNITRT--------FVHPTSNKQLCFMQHIIETLHP-GGRAAVVVPDNVLFEGGKGTDIR 325 ++ + P+S+ ++QH+++++ GR AVV+P LF G IR Sbjct: 293 EDLWLNDPFGRNFAGLPPSSSGDFAWVQHMVKSMADVSGRMAVVLPQGALFRKGVEGSIR 352 Query: 326 RDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMP 385 + L++ + ++ L +FY G+ +L + V + D Sbjct: 353 QKLLEMDLVEAVIGLAPNLFYGTGLAACILVL------RKRKPVKHKKKVLIADASRLFR 406 Query: 386 SFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATS 445 + EH Y + V +E K D L S Sbjct: 407 RGRAQNYLEPEHAAEILGWYRGFAD------------VQDTVRVVSLDEIKAEDWTLNIS 454 Query: 446 RWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALMR 505 R+ + D LP+ +A+ +A L +M Sbjct: 455 RYVLPPLQE--------------------DIPPLPDAIAAFKDALTRCREAEERLAQVMT 494 Query: 506 ELGA 509 E G Sbjct: 495 EGGW 498 >UniRef50_Q2J5S8 N-6 DNA methylase n=5 Tax=Bacteria RepID=Q2J5S8_FRASC Length = 816 Score = 357 bits (915), Expect = 8e-97, Method: Composition-based stats. Identities = 107/493 (21%), Positives = 183/493 (37%), Gaps = 77/493 (15%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAE------------ 48 + L L+ D LR G + + + +LFLK + + AE Sbjct: 51 LTLPQLERHLYAAADILR-GKMDASEFKEYIFGMLFLKRASDEFEVAEKRIIAQLIADGR 109 Query: 49 -------------------YLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAV 89 Y+PE RW L+ +I K L L + ++ V Sbjct: 110 SRTDAERQATLRARYGDTLYVPEKARWAWLRDQIHHNVGDALNKALELLEHHNSTALEGV 169 Query: 90 FHNVSTTIT------EPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETK 143 ++ T T +++ L+++ +++ N D G YE L+ + A+ Sbjct: 170 VQHIDFTRTVGQSSIPDRKLRDLIAHFNTVRLRNEDFEFP-DLLGAAYEYLIGEFADSAG 228 Query: 144 SGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDT 203 G+++TPR +++ ++ L+ P+P V DP +G+ G LI A +V D +L Sbjct: 229 KKGGEFYTPRAVVRMMVALVDPKPGMEVYDPCSGSGGMLILARDWVAEHGGDPRNL---- 284 Query: 204 QDFQIHRAFIGLELVPGTRRLALMNCLLHDI-EGNLDHGGAIRLGNTLGSDGENLPKAHI 262 +G E G ++ MN LLH I + ++ +G + + S L + Sbjct: 285 -------RLVGQEYNGGVWSISKMNLLLHGIPDADIRNGDTLAEPMHVSS--GELERFDR 335 Query: 263 VATNPPFGS---AAGTNITRTF-----VHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNV 314 V +NPPF G + F L F+QH++ L G AA V+P V Sbjct: 336 VLSNPPFSQNYSREGMDRENRFRWGWAPEGGKKADLMFVQHMVAVLRANGVAATVMPHGV 395 Query: 315 LFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDD 374 LF GG DIR L+D + ++ L +FY G+ VL A ++ Sbjct: 396 LFRGGTERDIRTALLDDDVIEAVIGLAPNLFYGTGIPACVLVLR----APGSKPAERAGK 451 Query: 375 VWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEE 434 V + + + EH++ Y + +V EE Sbjct: 452 VLFVNADAEFRAGRAQNYLMPEHVEKIVAAYHGF------------TDIPSYAKVVTREE 499 Query: 435 NKNTDQHLATSRW 447 + D +L R+ Sbjct: 500 LRAADDNLNIRRY 512 >UniRef50_A5VVC4 Type I restriction-modification system, M subunit n=34 Tax=Brucella RepID=A5VVC4_BRUO2 Length = 523 Score = 353 bits (906), Expect = 8e-96, Method: Composition-based stats. Identities = 111/532 (20%), Positives = 186/532 (34%), Gaps = 76/532 (14%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA------------- 47 + +L LWK D LR G + +Y + LFLK + +E Sbjct: 19 LTRTELENHLWKSADILR-GSIDSSDYKIYIFGFLFLKRLSDRFEEEAKESIRQGLPENV 77 Query: 48 ---------EYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTT-- 96 +L E RW +K K + + + ++ V N+ Sbjct: 78 AYSDPDEHEFFLVERARWSSIKKLT-TGIGDHLNKACAAIEDANPS-IEGVLANIDFNSE 135 Query: 97 ------ITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYF 150 ++ L+ + +D N A D G YE L+ K A++ G+++ Sbjct: 136 SRLGDAKNREGVLSRLIDHFSRIDLSN-ASLSEPDMLGRAYEYLIDKFADDAGKKGGEFY 194 Query: 151 TPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHR 210 TP+ +++ I+ LL P+P + DP G+ G L++ +V L+G ++ Sbjct: 195 TPQHVVRLIVELLAPKPGMRISDPTCGSGGMLVQVAEHVAK-------LEGKRLGEALNI 247 Query: 211 AFIGLELVPGTRRLALMNCLLHDI-EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPF 269 G E GT +A MN LLH + + ++ G IR L DG NL V NPPF Sbjct: 248 TLHGQEKNLGTWAIAKMNLLLHGLRDARIEKGDTIRNPRLLDQDG-NLFLYDRVIANPPF 306 Query: 270 G-------------SAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLF 316 G N + P + L F+QH++ TL+ G VV+P VLF Sbjct: 307 SLDSWGAEDVSGDTEKKGHNRFIYGIPPKNMGDLAFVQHMVATLNTKGVCGVVMPHGVLF 366 Query: 317 EGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVW 376 G IR ++ I+ LP +F G+ VL K V Sbjct: 367 RGSGDGRIRESMLKADLFEAIIGLPENLFAGTGIPATVLILNKAKATERK------GRVL 420 Query: 377 VYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENK 436 K+ + ++ + + D +E + Sbjct: 421 FIHGAKEFEERPKKNILGEGNITRIVNAFNAWKD------------EDRFCRIVDMKEIE 468 Query: 437 NTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAE 488 D +L SR+ +++ L D ++ ++ + L E Sbjct: 469 ENDFNLNISRYIDTL--EPEKPIDVQAELAKLWDAETARDEAAARMNALLKE 518 >UniRef50_C8XCE4 Site-specific DNA-methyltransferase (Adenine-specific) n=3 Tax=Actinomycetales RepID=C8XCE4_NAKMY Length = 548 Score = 352 bits (904), Expect = 1e-95, Method: Composition-based stats. Identities = 109/543 (20%), Positives = 196/543 (36%), Gaps = 69/543 (12%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA-------------- 47 +L LWK D LR G + Y + + L+FLK + E Sbjct: 24 TMKELKDTLWKAADKLR-GSMDASQYKDVILGLVFLKYVSDAFDERREQIRAELEADGID 82 Query: 48 -------------------EYLPEGYRWDDLK----------SRIGQEQLQFYRKMLVHL 78 ++ RW L + ++ Q + + +L Sbjct: 83 EDQIDGFLDDVDEYRGHGVFWVNRDARWSYLAQHAKGIPAVGNEPPKQVGQLIDEAMDYL 142 Query: 79 GEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKN 138 + + L + + + +++ L+ +S + K+RD G++YE L+K Sbjct: 143 MDANPSLRATLPRIYNRDNVDQRRLGELLDLFNSARFTGQGATKARDLLGEVYEYFLEKF 202 Query: 139 ANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDD 198 A G+++TP +++ ++ +L+P V DP G+ G ++ ++++++ + Sbjct: 203 AKAEGKRGGEFYTPASVVRVLVEVLEPTRG-RVYDPCCGSGGMFVQTEKFLEAHHREGS- 260 Query: 199 LDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLP 258 + G EL T R+A MN +H + GNL R G+T D Sbjct: 261 ----------EISVYGQELNERTWRMAKMNLAIHGLSGNLGP----RWGDTFARDIHPDV 306 Query: 259 KAHIVATNPPFGSAAG-----TNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN 313 +A V NPPF + V P N ++QHII L PGG A VV+ + Sbjct: 307 QADYVLANPPFNIKDWARNDKDPRWKFGVPPAGNANYAWIQHIISKLAPGGSAGVVMANG 366 Query: 314 VLFE-GGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCT 372 + G IR L++ + ++ LPT +F + G+ + FF K + + Sbjct: 367 SMSTQSGGEGAIRAQLVEADLVSCMVALPTQLFRSTGIPVCLWFFAKDKTVGTGGSVDRS 426 Query: 373 DDVWVYDLRTNMPSFGK-RTPFTDEHLQPFERVYGEDPHGLSPRTEG-EWSFNAEETEVA 430 V D R+ + +D+ + + S R G E++ A Sbjct: 427 GRVLFIDARSMGNMVDRAERSLSDDDIGLIAGTFHAWRGTASARAAGLEYADKPGFCYSA 486 Query: 431 DSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAM 490 E K D L R+ + E + I L + D + + + Sbjct: 487 TLAEIKAADYALTPGRYVG-AAEVEDDGEPIEEKIDRLTKQLFDQFDESERLAKVVRQRL 545 Query: 491 GEL 493 G L Sbjct: 546 GRL 548 >UniRef50_A4AK44 Type I restriction-modification system methylation subunit n=2 Tax=Actinobacteria (class) RepID=A4AK44_9ACTN Length = 507 Score = 350 bits (899), Expect = 5e-95, Method: Composition-based stats. Identities = 117/543 (21%), Positives = 200/543 (36%), Gaps = 84/543 (15%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQ--------------- 45 + L + LW + LR G V ++ + + ++F K ++ Sbjct: 11 LTQRQLESALWSAANALR-GPVDAGDFKSFVFPVMFFKWISDSWDFQHRQAVSDFGDALT 69 Query: 46 -------EAEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTIT 98 +P+ W+D+ K L+ + E + + VF +V+ + T Sbjct: 70 PEIEADYHPFLIPDECHWNDVYDVT-VNTGSKLGKTLLRIQEANPGKLDGVFGDVNWSNT 128 Query: 99 EPKQITALVSNMDSLD-WYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIK 157 + +AL +D+ D + S D G YE LL++ A + AG++FTPR ++ Sbjct: 129 DRLPESALTKLLDAFDKLTLDPNNASGDMLGAGYEYLLREFAEASGKKAGEFFTPRHVVH 188 Query: 158 TIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLEL 217 ++ LL+PQ + V DPA G+AG L+E V + D L G E Sbjct: 189 LLVKLLQPQSGDSVCDPACGSAGMLVETVNAVDASGGDSRTL-----------TLYGQEF 237 Query: 218 VPGTRRLALMNCLLHDIE-GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFG-SAAGT 275 T +A MN LH E + G R L + L K +V NPPF G Sbjct: 238 NLTTAAMARMNLYLHGQESFQIMRGDTFREPK-LLDEAGQLRKFDVVIANPPFSLRNWGA 296 Query: 276 NITRTFV---------HPTSNKQLCFMQHIIETLHPG-GRAAVVVPDNVLFEGGKGTDIR 325 ++ P +N ++QH++ T+ GRA +++P LF GGK IR Sbjct: 297 DMWARDPYKRAIGGEVPPPANGDWAWIQHMVSTIKDDTGRAGIIMPHGALFRGGKEAAIR 356 Query: 326 RDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMP 385 + L ++ LPT +FY+ ++ +L F K +A + V D ++ Sbjct: 357 EHFVRTGLLEAVIGLPTNLFYSTSIQVCILIFRKNKLAE------RVNKVMFIDAKSLSV 410 Query: 386 SFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATS 445 + + +++ + Y + D E + L Sbjct: 411 PGTNQNTMSVANIEAIDSAYKTGRDIDGDGGLS--------VRMVDLSEIETNSFDLNIG 462 Query: 446 RWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALMR 505 R+ K + ++ E L EA G L A + LD ++ Sbjct: 463 RYLK---------------------GMAAAEANVDEALALMREAQGRLSTAQTTLDEKLK 501 Query: 506 ELG 508 G Sbjct: 502 AAG 504 >UniRef50_A4XPR7 Type I restriction-modification system, M subunit n=6 Tax=Proteobacteria RepID=A4XPR7_PSEMY Length = 908 Score = 348 bits (893), Expect = 3e-94, Method: Composition-based stats. Identities = 110/586 (18%), Positives = 195/586 (33%), Gaps = 91/586 (15%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQE-------------- 46 + L L CD+LR G + Y + +LFLK + + Sbjct: 6 LTLARLENLLLTACDDLR-GNMDASEYKEYIFGMLFLKRASDLFDQRRDEIRKEGKAAGL 64 Query: 47 ------------------AEYLPEGYRWDD-----------LKSRIGQEQLQFYRKMLVH 77 ++PE RW+D + + K L Sbjct: 65 SDDDIKANLEDPDQYSGKYFFVPERARWNDGWVDEKWNVHPALKHVKENVGTALNKALEA 124 Query: 78 LGEDDKKLVQAVFHNVSTTI------TEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMY 131 L E + + +Q V +++ + + + N + + + D G Y Sbjct: 125 LEEANPEALQDVLKHINFNKKIGQNTLDDDTLVNFIQNFEKIPLRDEDFEFP-DLLGTAY 183 Query: 132 EGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKS 191 E L++ A+ AG+++TP +++ + + PQ V DP G+ G LI+A Y++ Sbjct: 184 EWLIKHFADSAGKKAGEFYTPAEVVRICVEICDPQEDMSVYDPTVGSGGMLIQARDYLRE 243 Query: 192 QTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI-EGNLDHGGAIRLGNTL 250 D +L A G E + T + MN LLH I + +R Sbjct: 244 CGADAAEL-----------ALYGQEKMGTTWSICKMNMLLHGISHAVIRQQDTLREPQHQ 292 Query: 251 GSDGENLPKAHIVATNPPFGSAAGTNITRTF-------VHPTSNKQLCFMQHIIETLHPG 303 DG NL + V NPPF + L F+QH++ L Sbjct: 293 AEDG-NLMRFDRVLANPPFSQNYIKKDIKHPGRFPVWMPEKGKKADLMFVQHMLAVLKHD 351 Query: 304 GRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVA 363 GR A V+P VLF G + + R+ +D+ +L ++ LP+ +FY G+ +L K A Sbjct: 352 GRMACVMPHGVLFRGAEEREARKYFIDRGYLEAVIGLPSNLFYGTGIPACILVLNKAGAA 411 Query: 364 NPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFN 423 V + + E + Y ++ Sbjct: 412 E-------RKHVLFINGDREYREGKAQNYLRPEDIDKIVHAYRAGLE------IPGYAQP 458 Query: 424 AEETEVADSEENKNTDQHLA------TSRWRKFSREWIRTAKSDSLDISWLKDKDSIDAD 477 + + N N +++ R + + D+L+ W ++ Sbjct: 459 VPVEAICAEDYNCNIRRYVDNAPPAEPHDVRAHLHGGVPVTEIDALEHFWQNYAGLRESC 518 Query: 478 SLPEPDVLAAEAMGELVQALSELDALMRELGASDE-ADLQRQLLEE 522 +P A A + AL++ + + A Q Q + E Sbjct: 519 FVPRAVAAAGAAYADFAPALADKREIAAHINAHPGVTQRQAQFMAE 564 >UniRef50_D0MHM2 N-6 DNA methylase n=3 Tax=Bacteria RepID=D0MHM2_RHOM4 Length = 527 Score = 348 bits (893), Expect = 3e-94, Method: Composition-based stats. Identities = 95/509 (18%), Positives = 182/509 (35%), Gaps = 79/509 (15%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA------------- 47 ++ + L LW +R G V + + + L+FLK + ++ Sbjct: 3 LDISTLETWLWDAACAIR-GPVDAPKFKDYILPLVFLKRLSDVFEDEMDRLAEEYGSREV 61 Query: 48 ----------------------EYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKL 85 Y+PE RW +++R QF + + ++ +L Sbjct: 62 AQHIVEEEREQGIIARGGGSVRFYIPENARWKAIRTRGQVGLGQFLTDAVRAVARENPRL 121 Query: 86 VQAVF------HNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNA 139 + I + + LV + G D G YE LL+K A Sbjct: 122 QGVIDIVDFNATAAGQRIVADEYLARLVDVLSRHRL--GLRDVEPDILGRAYEYLLRKFA 179 Query: 140 NETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDL 199 AG+++TPR + + +L+PQP V DP G+ G LI+ + + + Sbjct: 180 EGQGQSAGEFYTPREVAVLMARILEPQPGMTVYDPCCGSGGLLIKCHLRLLETHGEEQNG 239 Query: 200 DGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPK 259 G E+ P T +A MN ++HD+E ++ G +R + L Sbjct: 240 HRRLPAHHAPLQLFGQEINPATFAMARMNAVIHDMEADIRLGDTMRHPAF-RDETGRLMA 298 Query: 260 AHIVATNPPFGSAAGTNITRT--------FVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 311 +V NP + T++ + P S+ ++QH++ +L+ GR AVV+ Sbjct: 299 FDLVTANPMWNQNFPTDLYENDPYERFHLGIPPASSADWGWLQHMLASLNDTGRMAVVLD 358 Query: 312 DNVLFEG------GKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANP 365 + G + DIR+ +++ + ++ LP +FY ++ + Sbjct: 359 TGAVSRGSGNQGASRERDIRKAFVERDLIEAVILLPENLFYNTTAPGIIIVINRKKRH-- 416 Query: 366 NQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAE 425 ++ + + + TDEH++ R+Y E Sbjct: 417 ------PGEILLINASKLFAKGRPKNYLTDEHIETIARLYHEWQAEE------------G 458 Query: 426 ETEVADSEENKNTDQHLATSRWRKFSREW 454 + + +EE D +L+ SR+ + Sbjct: 459 LSAIITNEEAARNDYNLSPSRYVAQNGAE 487 >UniRef50_A8L1U0 N-6 DNA methylase n=3 Tax=Actinomycetales RepID=A8L1U0_FRASN Length = 564 Score = 345 bits (884), Expect = 3e-93, Method: Composition-based stats. Identities = 103/563 (18%), Positives = 186/563 (33%), Gaps = 87/563 (15%) Query: 5 DLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA----------------- 47 L LWK D LR G + Y + + L+FLK + E Sbjct: 17 QLRETLWKTADKLR-GSMDAAQYKDFVLVLIFLKYVSDAFAERREQIRQDVLADGIDESR 75 Query: 48 ----------------EYLPEGYRWDDLKSRIGQEQL-QFYRKMLVHLGEDDKKLVQAVF 90 ++P RW+ + + + + + + + + L + Sbjct: 76 AEEFLDDVDEYAGQGVFWVPGRARWEHIAANAKSAGIGELLNAAMDAVMKTNPALTGVLP 135 Query: 91 HNVSTTITEPKQITALVSNMDSLDWYNGAHGKSR-------------------------- 124 + + ++ LV + + + Sbjct: 136 RIFNGEGVDQHRLGELVDLLGDARFTGHRATERPPSTPTGEDGALFGESAAGVPTEAATR 195 Query: 125 ---DDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGF 181 D G++YE L++ A G+++TP +++ ++ +L+P V DP G+ G Sbjct: 196 PARDVLGEVYEYFLERFARAEGKRGGEFYTPASVVRLLVEVLEPYEG-RVYDPCCGSGGM 254 Query: 182 LIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHG 241 ++A+++V + D A G E T RLA MN +H I G+L Sbjct: 255 FVQAEKFVVAHRGLTHSGD---------IAVYGQESNERTWRLAKMNLAIHGITGDL--- 302 Query: 242 GAIRLGNTLGSDGENLPKAHIVATNPPFGSAAG-----TNITRTFVHPTSNKQLCFMQHI 296 + R +T +D +A + NPPF + R PT N ++QHI Sbjct: 303 -SARWDDTFRNDRHPDLRADFILANPPFNMSDWARTVDDQRWRYGTPPTGNANFAWLQHI 361 Query: 297 IETLHPGGRAAVVVPDNVLFEGGKGT-DIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVL 355 I L G A VV+ + + G +IR L++ + ++ LP +F + + Sbjct: 362 IAKLGSRGTAGVVMANGSMSSKQSGEGEIRAALVEADLVACMIALPPQLFRTTQIPACLW 421 Query: 356 FFTKGTVANPNQD-KNCTDDVWVYDLRTNMPSFGKR-TPFTDEHLQPFERVYGEDPHGLS 413 FF K + + D R + TD L+ Y S Sbjct: 422 FFAKDKGQLGARWLAERRGETLFIDARDMGTMIDRTERILTDGDLEKITDTYRAWRGAKS 481 Query: 414 PRTEG-EWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKD 472 R +G + A +EE + D L R+ + I + + I L + Sbjct: 482 ARDKGLAYENIPGFCYSASTEEIRTHDHVLTPGRYVGAAEADISNDEPMAEKIERLAKEL 541 Query: 473 SIDADSLPEPDVLAAEAMGELVQ 495 I + + + L Sbjct: 542 FIHFEESARLEKEVRSQLERLDA 564 >UniRef50_A3XPV4 Type I restriction-modification system specificity subunit n=2 Tax=cellular organisms RepID=A3XPV4_9FLAO Length = 513 Score = 345 bits (884), Expect = 3e-93, Method: Composition-based stats. Identities = 189/548 (34%), Positives = 271/548 (49%), Gaps = 69/548 (12%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQ--------------- 45 M ++ +++K+W L LRD GV Y +Y+ ++ LLFLKM E + Sbjct: 1 MTDSTIISKIWNLASVLRDDGVGYGDYLEQITYLLFLKMADELNKPPYNKGLKFPKLKDV 60 Query: 46 --EAEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQI 103 E W+ L + G E FY ++L L + K ++ +F I +P ++ Sbjct: 61 DGNEIQDGETCDWETLSGKRGAELESFYSQLLRSLSTE-KGMLGQIFTKSQNKIQDPAKL 119 Query: 104 TALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL 163 ++ +D DW + D G +YEGLLQKNA +TKSGAGQYFTPR LI+ I+ + Sbjct: 120 LKVIDMIDREDW----NMMGADIKGKIYEGLLQKNAEDTKSGAGQYFTPRSLIQAIVACV 175 Query: 164 KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRR 223 +PQP++ + DPA GT GF + A ++ LD + + F + F G E+V TRR Sbjct: 176 QPQPKKTIADPACGTGGFFLAAYDWIVEHHK----LDKEEKQFLKNNTFHGNEIVANTRR 231 Query: 224 LALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNI------ 277 + +MN LH+I G +D I + L +D + + V NPPFG + I Sbjct: 232 MCIMNMYLHNI-GEIDGEPFINPNDALIAD--DGKRFDYVLANPPFGKKSSMTITNEEGE 288 Query: 278 ---------TRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDL 328 + F +SNKQL F+QHI L G+AAVV+PDNVLFEGG G ++R+ L Sbjct: 289 QEKEDLSYNRQDFWETSSNKQLNFLQHIKTQLKINGKAAVVLPDNVLFEGGAGEEVRKQL 348 Query: 329 MDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFG 388 + LHTILRLPTGIFY GVK NVLFF + T ++W YD RTN+ Sbjct: 349 LKTADLHTILRLPTGIFYRPGVKANVLFFKNKPASKE----AWTREIWFYDYRTNVHHTL 404 Query: 389 KRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWR 448 K+ P L+ F ++Y T ++EE RWR Sbjct: 405 KKKPMLLSDLEEFIKLYNSSNINNRKET-----------WSKENEE----------GRWR 443 Query: 449 KFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALMRELG 508 K++ E I SLDI WLKDK D D+LP+PD+LA E + + L+ +M L Sbjct: 444 KYTYEDIIARDKTSLDIFWLKDKSLTDLDNLPDPDILAVEIIENIEAGLNSFKEIMETLN 503 Query: 509 ASDEADLQ 516 ++ + Sbjct: 504 EDVDSTPE 511 >UniRef50_A7HVM7 Type I restriction-modification system, M subunit n=14 Tax=cellular organisms RepID=A7HVM7_PARL1 Length = 505 Score = 343 bits (879), Expect = 1e-92, Method: Composition-based stats. Identities = 107/536 (19%), Positives = 190/536 (35%), Gaps = 82/536 (15%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQE-------------- 46 + + W CD R G V Y + + +LFLK + + Sbjct: 5 LTQQQVNQTAWAACDTFR-GVVDAGQYKDYILVMLFLKYISDLWNDHVEVYRKQFGEDEA 63 Query: 47 ---------AEYLPEGYRWDDLKS-RIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTT 96 LPEG + DL + R + L + + ++ ++ VF N+ Sbjct: 64 RIRRRLERERFILPEGTSFYDLHAQRTEANIGELINIALEKIEDANRAKLEGVFRNIDFN 123 Query: 97 --------ITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQ 148 +++ ++ + + D G+ Y L+ + A++ AG+ Sbjct: 124 SEANLGRVKDRNRRLKNMLEDFAKPALDLRPSRVTEDIIGECYIYLISRFASDAGKKAGE 183 Query: 149 YFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQI 208 ++TP + + + L P+P + + DPA G+ LI A V S+ Sbjct: 184 FYTPSAISRLLAKLAAPKPGDTICDPACGSGSLLIRAAEEVGSEN--------------- 228 Query: 209 HRAFIGLELVPGTRRLALMNCLLHDIE-GNLDHGGAIRLGNTLGSDGENLPKAHIVATNP 267 A G E+ T LA MN LH + ++ + +G++L K +V NP Sbjct: 229 -FALYGQEVNGATWALARMNMFLHAKDAARIEWCDTLNSPA--LVEGDHLMKFDVVVANP 285 Query: 268 PFGSAAG---------TNITRTFVHPTSNKQLCFMQHIIETLH-PGGRAAVVVPDNVLFE 317 PF + P S F+ H+IE GR AV+VP VLF Sbjct: 286 PFSLDKWGAENADTDQFKRFWRGIPPKSKGDYGFITHMIEIAKRQSGRVAVIVPHGVLFR 345 Query: 318 GGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWV 377 GG IR+ L+++ L ++ LP +F G+ +L F + DV Sbjct: 346 GGAEGRIRQALIEENLLDAVVGLPANLFTTTGIPVAILVFDRSR--EQGGANEDRRDVLF 403 Query: 378 YDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKN 437 D + + H+ Y ++S A E+A+++ N N Sbjct: 404 IDASKEFTPGKTQNVMDEAHIARVLEAYASRAETP------KYSHRASPEEIAENDFNLN 457 Query: 438 TDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGEL 493 +++ T + +D++ L+ + + L E A + EL Sbjct: 458 IPRYVDT------------FEPEEEIDVAALQKQINTIEAELAEVRGKMAGYLKEL 501 >UniRef50_A8YW15 Type I restriction modification system n=8 Tax=Bacteria RepID=A8YW15_LACH4 Length = 484 Score = 343 bits (879), Expect = 1e-92, Method: Composition-based stats. Identities = 221/520 (42%), Positives = 319/520 (61%), Gaps = 43/520 (8%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLK 60 M N ++V KLW C+ LRD GVSYQ+Y+ EL +LFLKM KE +E + +PE YRWD+L Sbjct: 1 MTNQEIVQKLWNECNVLRDDGVSYQDYITELTYILFLKMSKEQDEEKD-IPEKYRWDNLV 59 Query: 61 SRIGQEQLQFYRKMLVHLGEDD---KKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYN 117 ++ G E FYR++L+ LG + + + A++ N ST I EP + ++ +++ LDW++ Sbjct: 60 NKEGLELKNFYRQLLLDLGNPEVVKSERINAIYANASTAIDEPANLEKIIKDINDLDWWS 119 Query: 118 GAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAG 177 + GD+YEGL++KNANE KSGAGQYFTPR LI ++ + KP+ + DPAAG Sbjct: 120 ARE----EGLGDLYEGLMEKNANEVKSGAGQYFTPRVLINMMVKMTKPKIGDRCNDPAAG 175 Query: 178 TAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN 237 T GF++ AD+Y+K +T+D +L + DFQ+ AF G+ELVP T RLA+MN LH ++G Sbjct: 176 TFGFMVAADQYLKDKTDDYSELSEEKYDFQVKEAFSGMELVPNTHRLAIMNEYLHGMDGR 235 Query: 238 LDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNI--TRTFVHPTSNKQLCFMQH 295 L+ G ++ ++G+ + +V TNPPFG+ G + TSNKQL F+Q Sbjct: 236 LEQGDSL------SANGKWMKNFDVVLTNPPFGTKKGGERVTRDDLTYETSNKQLNFLQI 289 Query: 296 IIETLHPGG--RAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTN 353 I +L G RAAVVVPDNVLF G G +IR+DL++KC+LHTILRLPTGIFYAQGV+TN Sbjct: 290 IYNSLKRDGKARAAVVVPDNVLFADGVGEEIRKDLLNKCNLHTILRLPTGIFYAQGVQTN 349 Query: 354 VLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLS 413 VLFFT+G +DK+ T + W+YD+R M SFGKR P D+ FE+++ Sbjct: 350 VLFFTRG-----EEDKDNTKETWIYDMRHQMRSFGKRNPLNDKDFVEFEKLFC------- 397 Query: 414 PRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDS 473 ++ E D E+N N RWRKF+ + I+ + SLDISW+ D++ Sbjct: 398 ------VDDRSKRKETWDKEKNPN-------GRWRKFTIDEIKKRPNTSLDISWMSDEEE 444 Query: 474 IDADSLPEPDVLAAEAMGELVQALSELDALMRELGASDEA 513 + SL E E + +A++EL+ + + S++ Sbjct: 445 HETKSLKEILSDMNEKSKAISEAIAELNKALEGIDDSEDE 484 >UniRef50_B2HKY8 Type I restriction/modification system DNA methylase HsdM n=1 Tax=Mycobacterium marinum M RepID=B2HKY8_MYCMM Length = 484 Score = 341 bits (874), Expect = 4e-92, Method: Composition-based stats. Identities = 102/504 (20%), Positives = 187/504 (37%), Gaps = 37/504 (7%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKET--GQEAEYLPEGYRWDDL 59 +L LWK + LR G + Y + + L+FLK + G++ +P RW+ L Sbjct: 5 TMKELKDTLWKGAEKLR-GSIPASQYKDVILGLVFLKFVSDARDGRKPFVVPPEARWEAL 63 Query: 60 KSRIGQ-EQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNG 118 + Q ++ + + L + + +++ LV + + + Sbjct: 64 AGNAKSPDIGQLIDTAMLSVMTANPSLAATLPQ--LYHKVDQRRLGELVEVLGAARFSGR 121 Query: 119 AHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGT 178 ++RD G++YE L A G++FTP +++ I+ +L+P + DP G+ Sbjct: 122 PSHRARDLMGEVYEYFLGNFARAEGRRGGEFFTPPSVVRVIVEILEPSSG-RIYDPCCGS 180 Query: 179 AGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNL 238 G ++ +R++ + D + G E V T R+A MN +H I+ Sbjct: 181 GGMFVQTERFICAHDGDP-----------AQISIYGQESVEQTWRMAKMNLAVHGID--- 226 Query: 239 DHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAG-----TNITRTFVHPTSNKQLCFM 293 D G R G+T +D + V NPPF R P +N ++ Sbjct: 227 DAGLGARWGDTFATDQHDGVPMDYVMANPPFNIKDWARDEQDPRWRFGTPPAANANFAWI 286 Query: 294 QHIIETLHPGGRAAVVVPDNVLFEG-GKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKT 352 QHI+ L P G+A VV+ + + IR ++D + ++ LPT +F + G+ Sbjct: 287 QHILSKLAPTGQAGVVMANGSMSSKTNGEDRIRAGIIDADLVSCMVALPTQLFRSTGIPV 346 Query: 353 NVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGK-RTPFTDEHLQPFERVYGEDPHG 411 + FF K K + V D R + TD+ + Y Sbjct: 347 CLWFFAKDK-------KARSGQVLFIDARGLGSMVDRCERTLTDDDVARIGDTYHGWFGS 399 Query: 412 LSPRTEGE-WSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKD 470 S +G + A +E + L R+ + + ++ L Sbjct: 400 ASSVAKGTVYQDIPGFCRSASLDEIRAEGYVLTPGRYVG-TGASCADGEPIGDKLARLTT 458 Query: 471 KDSIDADSLPEPDVLAAEAMGELV 494 + D + D +G + Sbjct: 459 QLLAALDESTKLDEAVRAQLGRVR 482 >UniRef50_B6ENI7 N-6 adenine-specific DNA methylase n=19 Tax=root RepID=B6ENI7_ALISL Length = 587 Score = 341 bits (874), Expect = 5e-92, Method: Composition-based stats. Identities = 105/559 (18%), Positives = 203/559 (36%), Gaps = 84/559 (15%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQE-------------- 46 ++ L + LW+ D LR G + + + + ++FLK + +E Sbjct: 5 LSLQQLESFLWETADILR-GNMDASEFKDYIFGMMFLKRLSDAFEESQEKVIQYYLDKGK 63 Query: 47 -----------------AEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAV 89 ++PE RW LK + K + E+ ++ V Sbjct: 64 TQAQAEELANDEDEYDSTFFIPENARWSVLKDL-KHNIGEQLNKATESI-EEFNSALEGV 121 Query: 90 FHNVSTTITE---PKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGA 146 + I K++ L+S+ + N + D G YE L++ A+ Sbjct: 122 LVTIDFNIKNKLSDKKLQDLLSHFNKYRLRNEDFDRP-DLLGTAYEYLIKMFADSAGKKG 180 Query: 147 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDF 206 G+++TP +++ ++ LLKP + DP +G+ G L++ ++ Q + +L Sbjct: 181 GEFYTPSEVVQLLVELLKPHAGMRIYDPTSGSGGMLVQTRNQLEKQGENAANL------- 233 Query: 207 QIHRAFIGLELVPGTRRLALMNCLLHDI-EGNLDHGGAIRLGNTLGSDGENLPKAHIVAT 265 + G E+ T + MN LH + ++ G +R ++G L V Sbjct: 234 ----SLYGQEMNLNTWAICKMNMFLHGVQNADIRKGDTLRDPQH--TEGGELMSFDRVIA 287 Query: 266 NPPFGSAAGTN---------ITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLF 316 NPPF P L F+QH+I + + G VV+P VLF Sbjct: 288 NPPFSLKKWGKDECDNDGFGRFPYGTPPKDAGDLAFVQHMIASTNSEGMVGVVMPHGVLF 347 Query: 317 EGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVW 376 G IR+ +++ L ++ LP+G+FY G+ +L K + V Sbjct: 348 RGSSEKAIRQGILEDDLLEAVVGLPSGLFYGTGIPACLLIINKNKPSARK------GKVL 401 Query: 377 VYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENK 436 + + E + + E+ S ++ +E+A+++ N Sbjct: 402 FINGELEFAEGKNQNKLRPEDIAKIVTTF-ENHSFESQCDIKRYARVVPLSEIAENDFNL 460 Query: 437 NTDQHLATS----------------RWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLP 480 N ++ TS R+ + +I+ + D+S + D S D+ Sbjct: 461 NIRRYADTSPPAEIFDVRAILHGGIPVREVNDNYIQEEMLNGFDVSAVFDIKSDKKDNDY 520 Query: 481 EPDVLAAEAMGELVQALSE 499 + E+ ++ + E Sbjct: 521 YTFKPSIESKEQIRLVVEE 539 >UniRef50_C0QCH3 HsdM2 n=5 Tax=Bacteria RepID=C0QCH3_DESAH Length = 515 Score = 340 bits (872), Expect = 7e-92, Method: Composition-based stats. Identities = 112/550 (20%), Positives = 200/550 (36%), Gaps = 99/550 (18%) Query: 6 LVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA------------------ 47 L LW D LR G + ++ N + LLFLK + E Sbjct: 8 LETWLWGSADILR-GSIDSSDFKNYIFGLLFLKRANDVFDEENEKLVEKENWDIEAAASD 66 Query: 48 -----EYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITE--- 99 ++P+ RW + + + Q + L + E++ ++ V V + Sbjct: 67 PDYHKFFIPDTARWQTIIEKT-ENIGQAIDEALAAIEEENLN-LEGVMTAVHFGNKDVLS 124 Query: 100 PKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTI 159 + L+++ + N + D GD YE L++ A++ G+++TP+ +++ I Sbjct: 125 DALLQRLLNHFNKYSLKN-KDLYTPDLLGDAYEYLIKMFADDAGKKGGEFYTPKGVVRLI 183 Query: 160 IHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVP 219 + L+KP+P+ V DP G+ G L+E+ RY+ Q + +L + G E Sbjct: 184 VQLIKPEPKNSVYDPTCGSGGMLVESARYIAEQGGKVGELLDA--------SLFGQEKNL 235 Query: 220 GTRRLALMNCLLHDI-EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTN-- 276 GT + +N +LH+ + ++ G + SDG L V NPPF + Sbjct: 236 GTWAICKINMILHNYSDADIKKGCTLSTPKHSTSDG-ELMIFDRVIANPPFSQNKWWDAA 294 Query: 277 --------------------------ITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV 310 + V P L F+QH+I L+ G+ +V+ Sbjct: 295 EVDVKVNGNGKEMAVNYSKAVSDPYGRFQYGVPPRGYADLAFLQHMISVLNQNGKLGIVL 354 Query: 311 PDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKN 370 P VLF GG IR+ ++ L ++ LP+ +FY G+ ++L K + Sbjct: 355 PHGVLFRGGSEGKIRKGILKDDILEAVVGLPSKLFYNTGIPASILIVNKSKP------IH 408 Query: 371 CTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVA 430 + V D + + +EH++ Y + + Sbjct: 409 LKNKVIFIDASQDYKEGKNQNRLEEEHVKKVVEAYDAGQE------------IDKFMRIV 456 Query: 431 DSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAM 490 D +E K D +L +R+ S E + + E + E Sbjct: 457 DMKEIKENDYNLNITRYIDTSEEEVAV-------------DLVATLAGIKEIEAREQEID 503 Query: 491 GELVQALSEL 500 L L EL Sbjct: 504 ARLAGYLKEL 513 >UniRef50_A1AQ49 N-6 DNA methylase n=2 Tax=Proteobacteria RepID=A1AQ49_PELPD Length = 540 Score = 340 bits (871), Expect = 1e-91, Method: Composition-based stats. Identities = 101/574 (17%), Positives = 195/574 (33%), Gaps = 114/574 (19%) Query: 3 NNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQ----------------- 45 N +L+ LW D LR + Y + + L+F+K +T Q Sbjct: 2 NPELIKTLWATADKLRA-NMDAAEYKHIVLGLIFVKYISDTFQTRSSELRERFGNPDDEY 60 Query: 46 -----------------------EAEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDD 82 ++PE RW++++++ Q + + L E + Sbjct: 61 YIQDADDETLVCELEDRDYYREVNTFWVPEAARWENIRAQAKQPDIGKRIDDALTLIEAE 120 Query: 83 KKLVQAVFHNVSTTITEPK-QITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANE 141 ++ + + P ++ LV + ++ + +RD G +YE L + A+ Sbjct: 121 NPKLKGILDKRYARVQLPDGKLGELVDMVSTI-GFGVTGESARDILGQVYEYFLGQFASA 179 Query: 142 TKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDG 201 GQ++TP +++T++ +L P + V DP G+ G +++++++++ + D+ Sbjct: 180 EGKRGGQFYTPASIVRTLVAILAPHHGQ-VYDPCCGSGGMFVQSEKFIEAHGGRIGDV-- 236 Query: 202 DTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAH 261 + G E P T RLA MN + I+ NL A +T + +A Sbjct: 237 ---------SIYGQESNPTTWRLAAMNLAIRGIDFNLGKEPA----DTFVRNQHPDLRAD 283 Query: 262 IVATNPPFGSAAG-------TNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNV 314 V NPPF + P N ++QH++ L P GRA +V+ + Sbjct: 284 FVLANPPFNVSDWWHPSLEGDPRWEYGTPPQGNANYAWLQHMLYHLKPTGRAGIVLANGS 343 Query: 315 LFEG-GKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTD 373 + +IRR L++ + ++ +P +F+ + + F K Sbjct: 344 MSSSQNSEGEIRRALVEADKVEVMVAMPGQLFFNTQIPACLWFLAKQKS-------VRQG 396 Query: 374 DVWVYDLRTNMPSFGK-RTPFTDEHLQPFERVYGEDPHGLSPRTEGE------------- 419 +V D R + + F+DE +Q Sbjct: 397 EVLFIDARKLGTMISRVQIEFSDEDIQRIADTVHAWRGDGEIPLNPPLPKGEAETIPPFT 456 Query: 420 -------WSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKD 472 + E L R+ + Sbjct: 457 KGGPGGIYQDIPGFCRSVSLAEIAEHGHVLTPGRYVG-------------------AEAV 497 Query: 473 SIDADSLPEPDVLAAEAMGELVQALSELDALMRE 506 D ++ E E +GE + +ELD L+R Sbjct: 498 EDDDEAFTEKMQRLTETLGEQMARGAELDELIRR 531 >UniRef50_A8ZTW6 N-6 DNA methylase n=5 Tax=cellular organisms RepID=A8ZTW6_DESOH Length = 481 Score = 340 bits (871), Expect = 1e-91, Method: Composition-based stats. Identities = 182/520 (35%), Positives = 258/520 (49%), Gaps = 66/520 (12%) Query: 4 NDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQ-----EAEYLPE----GY 54 +D+ KLW C LR G+ Y +Y+ +L L+FLKM E G E E E Sbjct: 2 SDVANKLWGFCHTLRHDGIDYGDYIEQLTYLMFLKMAHEKGIDLSAVEYEDNQETVRLDC 61 Query: 55 RWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLD 114 W + G + L + +L L L+ +F T P + +++ +D Sbjct: 62 SWQPFVEKSGTDLLDAFANILRALSRQ-PGLLGDIFTQAMPRFTNPVNLKKVINMIDETL 120 Query: 115 WYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKP----QPREV 170 W D G +EGLL+K+A E K GAGQYFTPR LI++I+ +++P Q Sbjct: 121 W----SEMPVDVKGAAFEGLLEKSAAEGKKGAGQYFTPRALIQSIVTVMRPDPRKQKDFT 176 Query: 171 VQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL 230 + DPA GTAGFL+ A ++ + + LD + + G ELVP RRLALMN Sbjct: 177 ICDPACGTAGFLMVAYEWLMAVSKGA--LDRKEVARIKKQTYFGQELVPRPRRLALMNLF 234 Query: 231 LHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSA--AGTNITRTFVHPTSNK 288 LH +E + G +I + + + TNPPFG+ + F TSNK Sbjct: 235 LHGLEPQIYLGDSIYEPD-------RGERYDCILTNPPFGTKGANQAPVRDDFTVSTSNK 287 Query: 289 QLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIF--Y 346 QL F+QH++ L PGGRAA+V+PDNVLF G I LM+ C++HT+LRLP G F Y Sbjct: 288 QLNFIQHVVTILKPGGRAAMVLPDNVLFADAAGEVI-GYLMEDCNVHTLLRLPNGTFSPY 346 Query: 347 AQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKR-TPFTDEHLQPFERVY 405 +QGVK NV+FF KG T+++W+YD RTN+P K+ P T FE+ Y Sbjct: 347 SQGVKANVIFFQKG---------VKTENIWIYDGRTNIPGVTKKERPLTPAMFDEFEKCY 397 Query: 406 GEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDI 465 G DP G S R + R++KF+R I+ + +LDI Sbjct: 398 GPDPVGRSRRKDQG-----------------------DDGRFKKFTRSQIKD-RHYNLDI 433 Query: 466 SWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALMR 505 +WL+D D +LPEP +LA EA+ EL + L ++ Sbjct: 434 AWLRDDSLEDPANLPEPHLLAGEAITELNACVDRLQEILD 473 >UniRef50_Q89Z59 Probable type I restriction enzyme BthVORF4518P M protein n=16 Tax=Bacteria RepID=T1M_BACTN Length = 472 Score = 339 bits (870), Expect = 1e-91, Method: Composition-based stats. Identities = 176/515 (34%), Positives = 248/515 (48%), Gaps = 55/515 (10%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKE---TGQEAEYLPEGYRWDD 58 L K+W L L G+ + +Y+ +L LLFLKM E E +P GY+W D Sbjct: 7 TEQSLTKKVWNLATTLAGQGIGFTDYITQLTYLLFLKMDAENVEMFGEESAIPTGYQWAD 66 Query: 59 LKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNG 118 L + G + ++ Y + L L E D L+ ++ I +P + +++ +D W Sbjct: 67 LIAFDGLDLVKQYEETLKLLSELDN-LIGTIYTKAQNKIDKPVYLKKVITMIDEEQWL-- 123 Query: 119 AHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGT 178 D G +YE +L+KN + KSGAGQYFTPRPLI+ ++ + PQ E V DPA GT Sbjct: 124 --IMDGDVKGAIYESILEKNGQDKKSGAGQYFTPRPLIQAMVDCINPQMGETVCDPACGT 181 Query: 179 AGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNL 238 GFL+ A Y+K Q + +DF +A G++ P LA MN LH I + Sbjct: 182 GGFLLTAYDYMKGQ-----SASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTD- 235 Query: 239 DHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAG---TNITRTFVHPTSNKQLCFMQH 295 I ++L + L ++ NPPFG+ F T N QL F+QH Sbjct: 236 --RSPIVCEDSLEKEPSTL--VDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQH 291 Query: 296 IIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVL 355 ++ L GGRAAVV+PDNVLFE G G IR+ L+ +LHTILRLPTGIFYAQGVK NVL Sbjct: 292 MMLMLKTGGRAAVVLPDNVLFEAGAGETIRKRLLQDFNLHTILRLPTGIFYAQGVKANVL 351 Query: 356 FFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPR 415 FF+KG T ++W YD RT++ HL F Y Sbjct: 352 FFSKGQP---------TKEIWFYDYRTDIKHTLATNKLERHHLDDFVSCYN--------- 393 Query: 416 TEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSID 475 E+ D+E N RWRK+ + I SLDI+W+K +D Sbjct: 394 ---------NRVEIYDAENNPQ-------GRWRKYPVDEIIARDKTSLDITWIKPGGEVD 437 Query: 476 ADSLPEPDVLAAEAMGELVQALSELDALMRELGAS 510 SL E + + +A++EL+ L+ + + Sbjct: 438 DRSLAELMADIKDKSQTISRAVTELEKLLANIEEN 472 >UniRef50_B8HN07 N-6 DNA methylase n=2 Tax=Bacteria RepID=B8HN07_CYAP4 Length = 540 Score = 339 bits (870), Expect = 1e-91, Method: Composition-based stats. Identities = 107/553 (19%), Positives = 196/553 (35%), Gaps = 78/553 (14%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKE------------------- 42 NN L KLWK D LR + Y + + L+FLK + Sbjct: 11 NNESLEQKLWKAADKLRK-NIDAAEYKHIVLGLIFLKYISDAFDKLHAKLVAGEGEYAGA 69 Query: 43 --------TGQEAEYLPEGYRWDDLKSRIGQEQL-QFYRKMLVHLGEDDKKLVQAVFHNV 93 + ++P RW L+ + Q + Q + + + ++ KL++ + V Sbjct: 70 DPEDPDEYKAENVFFVPPDARWSVLQGQAKQPTIGQKVDEAMEAIERENPKLLKGILPKV 129 Query: 94 S-TTITEPKQITALVSNMDSLDWYNGAHGKS----------------RDDFGDMYEGLLQ 136 +P + L+ + S + +D G +YE L Sbjct: 130 YGQQKLDPTALGGLIDMIGSTNLAKAEAESDGQLVLETEPIAEPRRQQDLLGQVYEYFLG 189 Query: 137 KNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDL 196 + A GQ++TP ++K ++ +L+P V DP G+ G ++++++V L Sbjct: 190 QFALAEGKKGGQFYTPESVVKVLVEMLEPYKG-RVFDPCCGSGGMFVQSEKFVSHHQGRL 248 Query: 197 DDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGEN 256 +D+ + G E T +L MN + I+G+ + D Sbjct: 249 NDI-----------SIYGQESNETTYKLCRMNLAIRGIDGSNIRWN---PEGSFLKDAHK 294 Query: 257 LPKAHIVATNPPFGSAAG-------TNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVV 309 KA V NPPF + + V P N ++QH + L G A V Sbjct: 295 DLKADFVIANPPFNDSDWGGDLLRQDGRWQYGVPPVGNANFAWVQHFLYHLALTGAAGFV 354 Query: 310 VPDNVLFEGGKGT-DIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQD 368 + + L G +IR+ L+ + I+ LPT +FY G+ + F ++ N N+D Sbjct: 355 LSNGSLSSNTSGEGEIRKALVQADLVDCIVMLPTQLFYNTGIPACLWFLSRYKNGNKNRD 414 Query: 369 KNCTDDVWVYDLRTNMPSFGKRTP-FTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEET 427 + +V D +R F +E +Q Y E R + Sbjct: 415 RK--GEVLFIDASELGYMVNRRNRAFAEEDIQKIAGTYHEWK-----RDGSTYQDIKGFC 467 Query: 428 EVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAA 487 + A E + + L R+ + + + S ++ L + + E D Sbjct: 468 KSATLAEIEKHNFVLTPGRYVGI-PDEVESEVSFEETMAALTAELAAQMKEAAELDEEIK 526 Query: 488 EAMGELVQALSEL 500 + ++ L + Sbjct: 527 IQLAKVGFDLEGI 539 >UniRef50_A5UWR2 N-6 DNA methylase n=9 Tax=cellular organisms RepID=A5UWR2_ROSS1 Length = 523 Score = 339 bits (869), Expect = 2e-91, Method: Composition-based stats. Identities = 95/506 (18%), Positives = 181/506 (35%), Gaps = 72/506 (14%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA------------- 47 ++ + L LW +R G V + + + L+FLK + + Sbjct: 2 LDISTLETWLWDAACAIR-GPVDAPKFKDYILPLIFLKRLSDVFDDEIKRLSDVYGNCGL 60 Query: 48 ------------------EYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDK---KLV 86 Y+PE RW ++ R + QF + + ++ ++ Sbjct: 61 VLHLLEQERERGQVHLVRFYIPENARWKAIRQRGVRTLGQFLTDAVRDVARENPALQGVI 120 Query: 87 QAVFHNVST---TITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETK 143 V N +T I ++ L+ + G D G YE LL+K A Sbjct: 121 NMVDFNATTAGQRIIPDDHLSKLIDVLSRHRL--GLQDVEPDILGRAYEYLLRKFAEGQG 178 Query: 144 SGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTN-DLDDLDGD 202 AG+++TP + + LL PQPR V DP G+ G LI+ + Sbjct: 179 QSAGEFYTPGEVAILMAQLLDPQPRMTVYDPTCGSGGLLIKCHLRLLETHGVRSGRKFST 238 Query: 203 TQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHI 262 G E+ P T +A MN ++HD+E ++ G +R + + G L Sbjct: 239 ATPGVAPLRLFGQEINPATFAMARMNAVIHDLEADIRIGDTMRHPAFVDAAG-RLQTFDR 297 Query: 263 VATNPPFGSAAGTNITRT--------FVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNV 314 V NP + + P S+ ++QH++ +LH G+ AVV+ Sbjct: 298 VTANPMWNQKFPVETYENDPYERFTLGIPPHSSADWGWLQHMLASLHERGKMAVVLDTGA 357 Query: 315 LFEG------GKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQD 368 + G + DIR+ +++ + ++ LP +FY +L + Sbjct: 358 VSRGSGNQGSNRERDIRKAFVERDLIEAVILLPENLFYNTTAPGIILVVNRRKA------ 411 Query: 369 KNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETE 428 ++ + + + T+EH+ +Y + G + ++ Sbjct: 412 --RRGEILLINASQQFAKGRPKNYLTEEHIARIADIYHQWRVGANN--------HSPLHT 461 Query: 429 VADSEENKNTDQHLATSRWRKFSREW 454 + ++E D +L+ SR+ + + Sbjct: 462 IITTDEAARNDYNLSPSRYVSVNGKE 487 >UniRef50_Q0KFR5 Type I restriction-modification system methylation subunit n=5 Tax=Proteobacteria RepID=Q0KFR5_RALEH Length = 835 Score = 338 bits (867), Expect = 3e-91, Method: Composition-based stats. Identities = 100/508 (19%), Positives = 163/508 (32%), Gaps = 88/508 (17%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKE------------------ 42 + L L+K D LR G + + + +LFLK C + Sbjct: 3 LTLPQLERHLFKAADILR-GKMDASEFKEYIFGMLFLKRCSDVFDQRREEVIAERMNAGE 61 Query: 43 ---------------TGQEAEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQ 87 G E ++P R+ L Q K L + + KL Sbjct: 62 SRANAEKSAELERWYKGAEYFWVPPRSRYKFLLDEAHQNVGDSLNKALSGIETANTKLYD 121 Query: 88 -----AVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANET 142 V + ++ L+++ N D G YE L+ + A+ Sbjct: 122 VLEHIDFTRKVGQSKIPDIKLRQLITHFGIYRLRNEDFEFP-DLLGAAYEYLIGEFADSA 180 Query: 143 KSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGD 202 G+++TPR +++ ++ L++P + DP G+ G LI A Y+ D Sbjct: 181 GKKGGEFYTPRSVVRMMVRLIQPTLAHDIYDPCCGSGGMLIAAKEYIDEHGEDG------ 234 Query: 203 TQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE-GNLDHGGAIRLGNTLGSDGENLPKAH 261 G E +A MN LLH I NL + + + +G L Sbjct: 235 -----RKANLFGQEFNGTVWSIAKMNMLLHGISTANLQNEDTLAEPQHV--EGGELMHFD 287 Query: 262 IVATNPPFGSAAGT----------------NITRTFVHP--TSNKQLCFMQHIIETLHPG 303 V TNPPF G R P L F+QH++ G Sbjct: 288 RVLTNPPFSINWGNTEKNADGTPAWSPKFPERFRYGQVPLGAKKADLMFLQHMLAVTRDG 347 Query: 304 GRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFT----K 359 G A V+P VLF GG+ IR +++ L +L + +FY G+ +L Sbjct: 348 GMVATVMPHGVLFRGGEEKAIRAGIVEDDLLEAVLGVAPNLFYGTGIPACILVLRQRVQN 407 Query: 360 GTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGE 419 G + V + + EH++ + E Sbjct: 408 GANRVSGKPAERRGKVLFINADREFFEGRAQNHLLPEHIEKIVTTFNEFKQ--------- 458 Query: 420 WSFNAEETEVADSEENKNTDQHLATSRW 447 + + D+ K D +L R+ Sbjct: 459 ---VEGFSAIVDNATLKANDYNLNIRRY 483 >UniRef50_A1ZTI9 Type I restriction-modification system specificity subunit n=2 Tax=Bacteria RepID=A1ZTI9_9SPHI Length = 921 Score = 337 bits (865), Expect = 5e-91, Method: Composition-based stats. Identities = 113/571 (19%), Positives = 208/571 (36%), Gaps = 88/571 (15%) Query: 6 LVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA------------------ 47 L L++ CD LR G + Y + +LFLK + ++ Sbjct: 10 LENFLFQACDILR-GNMDASEYKEYIFGILFLKRLNDKFEQDQEKRRKALEKKGLAAEVV 68 Query: 48 -----------EYLPEGYRWD--DLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVS 94 Y+PE RW D + + K L + + + + V ++ Sbjct: 69 ARALNKANAYDYYIPENARWKGKDGIQHLKKHVGDALNKALAAIEDANLDKLSGVLKSID 128 Query: 95 TTIT--------EPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGA 146 T + ++ + + D++D + D G YE L++ A+ Sbjct: 129 FNRTIGKNKKTLDDTKLINFIQHFDTVDLRDENFEFP-DILGAAYEYLIKFFADSAGKKG 187 Query: 147 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDF 206 G+++TP ++K ++ LL+P P V DP G+ G LI+ YV+++ N+ L Sbjct: 188 GEFYTPAEVVKLMVQLLEPAPNAEVYDPTCGSGGMLIQCKNYVEARYNNASKL------- 240 Query: 207 QIHRAFIGLELVPGTRRLALMNCLLHDI-EGNLDHGGAIRLGNTLGSDGENLPKAHIVAT 265 +F G EL T L MN L HDI + ++ G I + L + +V Sbjct: 241 ----SFYGQELSGTTWALCKMNMLFHDIYDAKIEQGDTINNPLHVVD--GELQRFDVVMA 294 Query: 266 NPPFGSAAG-------TNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEG 318 NPPF + + R ++ S F+QH++ L GR VV+P VLF G Sbjct: 295 NPPFSADYKQDNIIGFKDRFRHWMPEKSKADFMFVQHMVRVLKDNGRMGVVMPHGVLFRG 354 Query: 319 GKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVY 378 D+R L+++ +L ++ LP +FY G+ +++ K V Sbjct: 355 STEKDMRHWLLERGYLDAVIGLPASLFYGTGIPASLIIINKKGADK-------RRKVLFI 407 Query: 379 DLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNT 438 + + E + VY + ++S + + N N Sbjct: 408 NADREYKEEKNQNKLRPEDISKITYVYHQRQELP------QYSRLMSYNDFLREDYNFNI 461 Query: 439 DQHLA------TSRWRKFSREWIRTAKSDSLDISW-----LKDKDSIDADSLPEPDVLAA 487 +++ R I A+ +L+ W L+++ + S A Sbjct: 462 RRYVDNSPPAEPQDVRAHLHGGIPAAEVAALEAYWQNYPGLRERVLVPYPSQAGYMQFAD 521 Query: 488 EAMGE--LVQALSELDALMRELGASDEADLQ 516 + L AL + + ++ +++ Q Sbjct: 522 SIADKATLKAALEQSPEIAQKHQQYEDSIAQ 552 >UniRef50_D0LVD7 Site-specific DNA-methyltransferase (Adenine-specific) n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LVD7_HALO1 Length = 860 Score = 334 bits (856), Expect = 6e-90, Method: Composition-based stats. Identities = 99/494 (20%), Positives = 172/494 (34%), Gaps = 77/494 (15%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKE------------------ 42 + L L+ D LR G + + + +LF+K C + Sbjct: 22 LTLGQLERHLYAAADILR-GKMDASEFKEYIFGMLFIKRCSDEFEARREEILAEQQAAGA 80 Query: 43 -------------TGQEAEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAV 89 + ++P RW + + ++ L L ED + V Sbjct: 81 SAEAAALAAEQPERYARSFFVPPSARWAQVSALE-RDLGTGLNAALAAL-EDTNPALHGV 138 Query: 90 FHNVSTTIT------EPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETK 143 ++ T K++ ALV++ N S D G YE L+ + A+ Sbjct: 139 LRHIDFNRTVGKSRMPDKRLRALVAHFGRHRLRNRDFEFS-DMLGAAYEYLIGEFADSAG 197 Query: 144 SGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDT 203 G+++TPRP+++ I+ L P+P V DP +G+ G LI A +YV+ D L Sbjct: 198 KKGGEFYTPRPVVRLIVRLSDPRPGMRVYDPCSGSGGMLILARQYVQEHGGDAGSLG--- 254 Query: 204 QDFQIHRAFIGLELVPGTRRLALMNCLLHDI-EGNLDHGGAIRLGNTLGSDGENLPKAHI 262 G E G ++ MN LLH + + ++ +G + + L + Sbjct: 255 --------LYGQEDNGGVWTISQMNMLLHGVSDADIRNGDTLHEPLHIDPASGELLRFDR 306 Query: 263 VATNPPFGSAAGTN------ITRTFVHPT--SNKQLCFMQHIIETLHPGGRAAVVVPDNV 314 + TNPPF + R + P + QH++ L PGG A V+P V Sbjct: 307 IITNPPFAQNYSPDELPLPERFRFGMCPHAGKKADWMYAQHMLAALAPGGMAVTVMPHGV 366 Query: 315 LFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDD 374 LF GG IR +++ + ++ LP +FY + VL A + Sbjct: 367 LFRGGVEQAIRSRVLEADLVEAVIGLPPNLFYGTSIPACVLVLR----APEAKPPERQGR 422 Query: 375 VWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEE 434 V D + + EH++ + ++ V +E Sbjct: 423 VLFVDASDEFHAARAQNHLQPEHVEKIATAF------------ERFAEVPGYASVVSVDE 470 Query: 435 NKNTDQHLATSRWR 448 +L + Sbjct: 471 ILAAGGNLNIRSYV 484 >UniRef50_C9KRW3 Type I restriction-modification system, M subunit n=9 Tax=Bacteroidales RepID=C9KRW3_9BACE Length = 497 Score = 330 bits (847), Expect = 6e-89, Method: Composition-based stats. Identities = 107/516 (20%), Positives = 197/516 (38%), Gaps = 76/516 (14%) Query: 4 NDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA---------------- 47 DL L++ C+ +R G VS N+ + + LL+ K + E Sbjct: 14 QDLYNFLFEACNIIR-GPVSQDNFKDYITPLLYYKRISDVYDEETEEALISSGGDKEYAS 72 Query: 48 ------EYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVF------HNVST 95 +P+G W +++ R + + + + + V + Sbjct: 73 LPEQHRFVIPDGCHWQEVRERT-ENLGAAIVGAMRQIEIANPDTLYGVLSMFSSQKWTNK 131 Query: 96 TITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPL 155 I +I L+ ++ N D GD YE LL+K A+++K+ AG+++TPR + Sbjct: 132 AILNDSKIRDLIEHLSKRKLGN--KDYPADLMGDAYEILLKKFADDSKAQAGEFYTPRSV 189 Query: 156 IKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGL 215 ++ ++H+L PQP E V DPA G+ G LIEA RY+ D + G Sbjct: 190 VRLLVHILDPQPGETVYDPACGSGGMLIEAIRYMHD-------------DSLCCGSIFGQ 236 Query: 216 ELVPGTRRLALMNCLLHDI-EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAG 274 E +A MN LH + N+ G +R L G N+ K V NPPF Sbjct: 237 EKNVVNAAIAKMNLFLHGASDFNVMQGDTLRDPKIL--QGGNIAKFDCVIANPPFSLENW 294 Query: 275 ---------TNITRTFVHPTSNKQLCFMQHIIETLHPG-GRAAVVVPDNVLFEGGKGTDI 324 S ++QH+I ++ G GR AVV+P +LF G + +I Sbjct: 295 GATEWSSDKYKRNIYGTPSDSCGDYAWIQHMICSMSSGKGRMAVVMPQGILFRGNQEAEI 354 Query: 325 RRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNM 384 R+ L++ + ++ L +FY G+ L + A+ + + + D + Sbjct: 355 RKQLVESNLIEAVVTLGDKLFYGTGLSPCFLIIRRMKQAH------HSGRILMIDGSQIL 408 Query: 385 PSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLAT 444 + + + +Y +S + + + +E ++ + +L+ Sbjct: 409 TQKRAQNILEENDIDRLYSLYQ------------NYSDEEDYSRIVTLQEIRDKEYNLSP 456 Query: 445 SRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLP 480 +R+ + +E IR + + + Sbjct: 457 NRYVVYHKEEIRPYAEVLAEFKQAYEDVKRLENEFS 492 >UniRef50_C8VZI4 Type I restriction-modification system, M subunit n=9 Tax=Bacteria RepID=C8VZI4_DESAS Length = 527 Score = 329 bits (842), Expect = 2e-88, Method: Composition-based stats. Identities = 112/561 (19%), Positives = 196/561 (34%), Gaps = 108/561 (19%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQE--------------- 46 D+ A +W+ + R G + NY + + +LF+K ++ E Sbjct: 4 TRKDIEAAIWRGANTFR-GAIDAANYKDYILPMLFVKYLSDSYLEKVEKLEQKYNDPVRA 62 Query: 47 -------AEYLPEGYRWDDLK-SRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTT-- 96 + E +R+ L +R + L + +D+ L VF N+ Sbjct: 63 ERAINRLPFAIKEKHRFSWLYQNRYNDNLGELINIALRGIEDDNPSLFTGVFRNIDFNSE 122 Query: 97 ------ITEPKQITALVSNMDSLDWYNGAHGKSR-----DDFGDMYEGLLQKNANETKSG 145 + ++ L+ + + LD A D GD YE ++ + A + Sbjct: 123 AMLGNHNQKNTRLRELLEDFEPLDLRPSAIEPEEGKVAADTIGDAYEYMIGEFARQAGKK 182 Query: 146 AGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQD 205 AG +FTP + + I ++ P+ + + DP G+ LI + + N Sbjct: 183 AGSFFTPSEVSELIARIVNPKISDTMYDPTCGSGSLLIRTGKKAIEKENG---------- 232 Query: 206 FQIHRAFIGLELVPGTRRLALMNCLLHDI-EGNLDHGGAIRLGNTLGSDGENLPKAHIVA 264 A G E+ + +A MN LH+I + + G ++ L DG NL + ++ Sbjct: 233 NIKTLALYGQEMNGSSWSMAKMNMFLHEIMDARIAWGDSLANPMHLDPDG-NLMQFDVIV 291 Query: 265 TNPPFGSAAG-------------------------TNITRTFVHPTSNKQLCFMQHIIET 299 N PF + V P S F+ H+I + Sbjct: 292 ANMPFSQDKWAAGFNTGGEMTGKGKQFKMEASLDKFHRFDWGVPPASKGDWAFLLHMIAS 351 Query: 300 LHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTK 359 L GGR A V P VLF G IR+ ++++ L ++ LP +FY G+ +L F K Sbjct: 352 LKSGGRIAAVAPHGVLFRGASEGRIRQAVIERNLLDAVIGLPANLFYGTGIPACILVFKK 411 Query: 360 GTVANPNQDKNCTDDVWVYDLRTN-------MPSFGKRTPFTDEHLQPFERVYGEDPHGL 412 +DV D + +H++ + Y Sbjct: 412 NRN---------RNDVLFIDASGKDEKGHLRYRKDKNQNRLETKHIEDIVKAY------- 455 Query: 413 SPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKD 472 S + VA +E K + +L R+ E D ++I +K+ Sbjct: 456 -----ETRSDIIKLAHVATLDEIKANEYNLNIPRYVDTFEEE------DLVNIEEVKNNI 504 Query: 473 SIDADSLPEPDVLAAEAMGEL 493 + L E + AE + EL Sbjct: 505 ANIQKELAEVEAQMAEYLKEL 525 >UniRef50_C6MIL3 N-6 DNA methylase n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MIL3_9PROT Length = 549 Score = 327 bits (838), Expect = 7e-88, Method: Composition-based stats. Identities = 95/561 (16%), Positives = 181/561 (32%), Gaps = 86/561 (15%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQE-------------- 46 + L +LWK L + Y + + L+FLK + +E Sbjct: 7 IKTEPLEKQLWKAACKL-QKNIDAAEYKHVVLGLMFLKYISDAFEELHDRLEKGEGDLVG 65 Query: 47 -------------AEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNV 93 ++P RW L + Q + + + E + ++ V V Sbjct: 66 ADPEDKDEYRAENVFFVPAESRWPHLVAHARQPDIGTHVDAAMDAIEKENPSLKGVLPKV 125 Query: 94 STT-ITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTP 152 +P + L+ + ++ + S+D G ++E L + A GQ++TP Sbjct: 126 YARQNLDPTSLGELIDLIGNIALGDAKAR-SQDVLGHVFEYFLGEFALAEGKQGGQFYTP 184 Query: 153 RPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAF 212 R +++ ++++L+P V DP G+ G ++++++V+ +DD+ + Sbjct: 185 RSIVELLVNMLEPYQG-RVFDPCCGSGGMFVQSEKFVEEHQGRIDDI-----------SI 232 Query: 213 IGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSA 272 G E T RLA MN + I+ + + +D KA + NPPF + Sbjct: 233 YGQESNQTTWRLAKMNLAIRGIDSSQVKWNN---EGSFLNDAHKDLKADFIIANPPFNVS 289 Query: 273 AG-------TNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGT-DI 324 + P N ++QH I L P G A VV+ L G DI Sbjct: 290 DWSGEQLRGDARWQYGTPPPGNANFAWLQHFIYHLSPTGIAGVVLAKGALTSKTSGEGDI 349 Query: 325 RRDLMDKCH-LHTILRLPTGIFYAQGVKTNVLFFTKGTVA-------------------- 363 R+ L+ + + I+ LP +F + + F + Sbjct: 350 RKRLITDGNLIDCIVNLPAKLFLNTQIPAALWFLNRNRAGMDIGGHAKTIVGANNHLPLQ 409 Query: 364 ------NPNQDKNCTDDVWVYDLRTNMPSFGKR-TPFTDEHLQPFERVYGEDPHG---LS 413 P T ++ D R +R + + +Q Y + + Sbjct: 410 NPPQQNPPQYHHPRTHEILFIDARNLGHLINRRTKELSHDDIQQIANTYHAWRNPAVIPA 469 Query: 414 PRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDS 473 + E D L R+ E + + LK + Sbjct: 470 QTGIQPYEDIKGFCASVPVERVAELDYVLTPGRYVGLPDEEDDFNFPERF--AALKAEFE 527 Query: 474 IDADSLPEPDVLAAEAMGELV 494 + E++ + Sbjct: 528 AQLQEEVALNQAIVESLARVK 548 >UniRef50_B0S355 Type I restriction-modification system DNA methylase n=15 Tax=cellular organisms RepID=B0S355_FINM2 Length = 502 Score = 327 bits (838), Expect = 8e-88, Method: Composition-based stats. Identities = 91/528 (17%), Positives = 183/528 (34%), Gaps = 73/528 (13%) Query: 6 LVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMC-------------------KETG-- 44 ++W L G + Y + L+FL+ + Sbjct: 11 FEKQIWDAACVLW-GHIPAAEYRKVIIGLIFLRYISTAFEQRYKELVEEGDGFEDDRDAY 69 Query: 45 --QEAEYLPEGYRWDDLKSRIGQ-EQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPK 101 + ++P+ RW + + E + + ++K L + N + + K Sbjct: 70 TMENIFFVPKEARWSTIAAAAHSPEIGTVIDSAMRAIETENKNLKNVLPKNYGSPDLDKK 129 Query: 102 QITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIH 161 + +V + + S D G YE + + A + G G+++TP ++KT++ Sbjct: 130 VLGDVVDIFTN-NIDMSDTEASEDLLGRTYEYCIAQFAEKEGVGGGEFYTPSSVVKTLVS 188 Query: 162 LLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGT 221 +LKP V D G+ G +++++++++ + + G E P T Sbjct: 189 ILKPFENCRVYDCCCGSGGMFVQSEKFLEAHGAKRGAI-----------SVYGQEANPDT 237 Query: 222 RRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAG------- 274 ++A MN + I+ + A +T +D KA + NPPF Sbjct: 238 WKMAKMNMAIRGIDADFGPYNA----DTFSNDLHPTLKADFILANPPFNYHPWGQQALQD 293 Query: 275 TNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGT-DIRRDLMDKCH 333 + + P N ++QH+I L P G+ +V+ + L G IR+ +++ Sbjct: 294 DKRWKYGLPPAGNANYAWIQHMIHHLAPNGKIGLVLANGALSTQTSGEGTIRKKIIEDDL 353 Query: 334 LHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSF-GKRTP 392 + I+ +PT +FY+ + + F +K D R K Sbjct: 354 IEGIVAMPTQLFYSVTIPVTLWFISKNK--------KQKGKTLFIDARKMGHMVDRKHRD 405 Query: 393 FTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSR 452 F +E +Q + +G +G VA E+ D L R+ Sbjct: 406 FDEEDIQKLADTFTAFQNGTLEDVKG-------FCAVASLEDIAKQDYILTPGRYVGIEE 458 Query: 453 EWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSEL 500 + ++K + L + + E E+ + L + Sbjct: 459 QEDDGEP--------FEEKMARLTSELSDMFEKSHELEDEIRRKLGAI 498 >UniRef50_B3EQE6 Type I restriction-modification system, M subunit n=30 Tax=Bacteria RepID=B3EQE6_CHLPB Length = 527 Score = 325 bits (834), Expect = 2e-87, Method: Composition-based stats. Identities = 114/552 (20%), Positives = 199/552 (36%), Gaps = 95/552 (17%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQE-AEYLPEGYRWDDL 59 ++ D+ + W CD R G V Y + + +LFLK + Q+ E + Y DD+ Sbjct: 5 IDQKDINSAAWSACDTFR-GVVDPAQYKDYILVMLFLKYISDVWQDHYEEYQKQYGDDDI 63 Query: 60 K------------------------------------------SRIGQEQLQFYRKMLVH 77 + R + +L H Sbjct: 64 RIRRKLERERFVLPVVKLTEKNDETGEEAVLDEFPATYYSLYERRSAANIGELINIVLDH 123 Query: 78 LGEDDKKLVQAVFHNVSTT--------ITEPKQITALVSNMDSLDWYNGAHGKSRDDFGD 129 + + +K ++ VF N+ +++ L+ + S D G+ Sbjct: 124 IEDSNKVKLEGVFRNIDFNSEANLGKTKDRNRRLKQLLEDFHKPQLNMKPSLVSEDVIGN 183 Query: 130 MYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYV 189 Y L+++ A+++ AG++FTP + + + L P+P + + DPA G+ G LI+A + V Sbjct: 184 TYIYLIERFASDSGKKAGEFFTPFKVSELVAKLADPRPGDRICDPACGSGGLLIKAAKEV 243 Query: 190 KSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE-GNLDHGGAIRLGN 248 + A G E T L MN LH + ++ + Sbjct: 244 GDRN----------------FALFGQESNGSTWALCRMNMFLHSFDSARIEWCDTLNSP- 286 Query: 249 TLGSDGENLPKAHIVATNPPFGSAAG---------TNITRTFVHPTSNKQLCFMQHIIE- 298 L + + L K + V NPPF N V P S F+ H++E Sbjct: 287 -LLVENDRLMKFNCVVANPPFSLDKWGAENAESDQYNRFWRGVPPKSKGDWSFISHMVEI 345 Query: 299 TLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFT 358 L GR AVVVP VLF G IR+ ++++ L ++ LP +F + +L F Sbjct: 346 ALEKEGRVAVVVPHGVLFRGAAEGRIRQKMIEENLLDAVIGLPGNLFQTTNIPVAILVFD 405 Query: 359 K---GTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPR 415 + GT + K DV D S + +DE + R Y E Sbjct: 406 RSREGTTKDTKSTKGENRDVLFVDASREFVSGKNQNTLSDEQIAKIMRTYRERTE----- 460 Query: 416 TEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSID 475 +++ A+ E+ +++ N N +++ T F E + +I L+ + Sbjct: 461 -VEKYAHVADVAEIKENDFNLNIPRYVDT-----FEEEEEIDIDAVQEEIDNLEKELVEV 514 Query: 476 ADSLPEPDVLAA 487 + E Sbjct: 515 RKQMAEKLQQIQ 526 >UniRef50_C6BT25 N-6 DNA methylase n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BT25_DESAD Length = 856 Score = 325 bits (832), Expect = 3e-87, Method: Composition-based stats. Identities = 103/494 (20%), Positives = 189/494 (38%), Gaps = 76/494 (15%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKE------------------ 42 + + L KL+K CD LR G + Y + +LFLK + Sbjct: 5 LTLSSLERKLFKACDILR-GNMEASEYKEYIFGMLFLKRLSDQFHKDRAILAQDLAAKGI 63 Query: 43 -----------TGQEAEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFH 91 Q Y+PE RW+ + I ++ K L + E + + +Q V Sbjct: 64 PEEAKAALLDKRNQYTFYVPESARWEQI-QHIKKDVGSGLNKALAAIEEANPETLQDVLK 122 Query: 92 NVSTT------ITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSG 145 +++ + + + + + + N D G YE L++ A+ Sbjct: 123 SINFNRKVGQRTLDDSTLVEFIQHFNDIPLSNDDFEFP-DLLGAAYEFLIKHFADSAGKK 181 Query: 146 AGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQD 205 G+++TP +++T++ +++PQ + DP AG+ G LI++ +YV+ ++ +L Sbjct: 182 GGEFYTPTEVVRTLVEIIEPQEGMGIYDPTAGSGGMLIQSAKYVQECGGNVKNL------ 235 Query: 206 FQIHRAFIGLELVPGTRRLALMNCLLHDIEG-NLDHGGAIRLGNTLGSD------GENLP 258 + G EL T + MN +LH I ++ ++ L D L Sbjct: 236 -----SLAGQELAGSTWSMCKMNMILHGIVSQDIRQEDVLKRPLHLKKDPDQNNQNHELK 290 Query: 259 KAHIVATNPPFGSAAG------TNITRTFVHPT-SNKQLCFMQHIIETLHPGGRAAVVVP 311 V NPPF + ++ T L F+QH++ L G+ AV++P Sbjct: 291 TWDRVIANPPFSQNYSKKEMLFKDRFDVWLPTTGKKADLMFVQHMVAVLKNNGKCAVIMP 350 Query: 312 DNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNC 371 VLF GG+ + R ++K L I+ LP+G+FY G+ +L K A+ Sbjct: 351 HGVLFRGGEERNCREKFIEKGILEAIVGLPSGLFYGTGIPACILVLNKEGAAD------- 403 Query: 372 TDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVAD 431 +V + + E + VY + ++S E+ Sbjct: 404 RKEVLFINADREYKEGKNQNKLRPEDIAKITHVYR------NRLEVDKYSRMVPVQELEK 457 Query: 432 SEENKNTDQHLATS 445 + N N +++ S Sbjct: 458 EDFNCNIRRYVDNS 471 >UniRef50_D2TNZ8 Putative type I restriction modification system HsdM component n=1 Tax=Citrobacter rodentium ICC168 RepID=D2TNZ8_CITRO Length = 500 Score = 323 bits (828), Expect = 1e-86, Method: Composition-based stats. Identities = 173/527 (32%), Positives = 252/527 (47%), Gaps = 47/527 (8%) Query: 4 NDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYR--WDDLKS 61 D+V ++W + LRD G+S +YV +L L+FLKM E + WD+L Sbjct: 7 TDIVNRVWGYANILRDDGISNGDYVEQLTFLIFLKMNAERVSLGKLKGNIVSDAWDELLK 66 Query: 62 RIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHG 121 G+ L Y K++ LGE + L++ +F+ I + ++ L+ ++ W + Sbjct: 67 LSGESLLTKYSKIISQLGESE-GLLETIFYGAQNKIQDAGKLKKLILMINEEVWLSS--- 122 Query: 122 KSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGF 181 + D G +YEG+LQK+A+ K GAGQYFTPR LI+ I+ + P+P + + DPA GT GF Sbjct: 123 -NFDVKGAIYEGILQKSADTEKKGAGQYFTPRALIEAIVEAVDPEPMQTIADPACGTGGF 181 Query: 182 LIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHG 241 L A Y+ ++ + + D F + F G E+ RL MN LH+I + Sbjct: 182 LTVAHDYIFNKIDKNE---VDKHSFLRNSTFSGNEISSSVARLCAMNLYLHEIG---IYS 235 Query: 242 GAIRLGNTLGSDGENLPKAHIVATNPPFGSA------------AGTNITRTFVHPTSNKQ 289 I + + L S + K IV NPPFG I F T+NKQ Sbjct: 236 NPISVSDALES--KPSKKVDIVLANPPFGRKSTFTINIDKSKIDNKYIRDDFWVETTNKQ 293 Query: 290 LCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQG 349 L F+QHI L G+AAVV PDN+LF+ G G IRR L+D+ +LHT+LRLPTGIFYAQG Sbjct: 294 LNFLQHICNMLKKDGKAAVVFPDNILFDSGAGEKIRRKLLDEYNLHTVLRLPTGIFYAQG 353 Query: 350 VKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDP 409 VK NVLFF ++ + T+ VW YDLRT++ K F +Y Sbjct: 354 VKANVLFFDNCI----DKKRPRTEKVWFYDLRTSIHKTFKHNKLIRSDFNEFIALY---- 405 Query: 410 HGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLK 469 + E S + + RWR FS E I +LDI WLK Sbjct: 406 -----KKENIESRKSTWSTDVT-------KYSTPNGRWRAFSYEEILLRDKANLDIQWLK 453 Query: 470 DKDSIDADSLPEPDVLAAEAMGELVQALSELDALMRELGASDEADLQ 516 + ++++ VL + L AL + + L S + + + Sbjct: 454 EDVFNQSENIESSPVLVDSIIELLSSALDDFREVEALLSNSQKRNDE 500 >UniRef50_D2R8Y7 Type I restriction-modification system, M subunit n=2 Tax=Bacteria RepID=D2R8Y7_9PLAN Length = 835 Score = 323 bits (827), Expect = 1e-86, Method: Composition-based stats. Identities = 91/474 (19%), Positives = 177/474 (37%), Gaps = 66/474 (13%) Query: 14 CDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEY----LPEGYRWDDLKSRIGQEQL- 68 CD LR GG+ Y + + LLFLK + Y +P+G + D+ + G + + Sbjct: 51 CDELR-GGMDASQYKDYVLVLLFLKYISDKYANVPYAPIEVPKGSSFKDMVALKGTKDIG 109 Query: 69 -QFYRKMLVHLGEDDKKLVQAVFHNVSTT---ITEPKQITALVSNMDSLDW-YNGAHGKS 123 +K++ + + ++ F++ + + ++T L++ ++ ++ Sbjct: 110 DDINKKIIAPIAQANRLSDMPDFNDSTKLGSGKEKVDRLTNLIAIFENKSLDFSKNRADG 169 Query: 124 RDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQP-----REVVQDPAAGT 178 D GD YE L++ A E+ GQ++TP + + I ++ + V DP G+ Sbjct: 170 DDILGDAYEYLMRHFATESGKSKGQFYTPAEVSRIIAQIIGIKTAKTTGSTTVYDPTCGS 229 Query: 179 AGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE-GN 237 L++ + Q G E T LA MN +LH++ Sbjct: 230 GSLLLKVSD-----------------EAQTPVTLYGQEKDAATSGLARMNTILHNMPTAL 272 Query: 238 LDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAG----------TNITRTFVHPTSN 287 ++ G + + DG +L V NPPF + P Sbjct: 273 IEQGNTLSNPRFV--DGSSLKTFDYVVANPPFSDKRWSTGLDPASDPHARFTLGIPPAKQ 330 Query: 288 KQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYA 347 ++ HII +L G+ A ++P VLF G +IR++L+ K ++ I+ LP +FY Sbjct: 331 GDYAYLLHIIRSLKSTGQGACILPHGVLFRGNAEAEIRKNLLRKGYIKGIIGLPANLFYG 390 Query: 348 QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGE 407 G+ ++ K N +++ D + G + + + + Sbjct: 391 TGIPACIVVIDKKEA-------NRRQAIFMIDASSGYMKDGPKNRLRARDIHKIVDTFNQ 443 Query: 408 DPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWR-KFSREWIRTAKS 460 + + + EE + D +L R+ + E I+ Sbjct: 444 QLE------------VPKYSRLVTIEEIEKNDFNLNLPRYIDSQTPEDIQNIDG 485 >UniRef50_B5H9V2 N-6 DNA methylase n=1 Tax=Streptomyces pristinaespiralis ATCC 25486 RepID=B5H9V2_STRPR Length = 519 Score = 322 bits (826), Expect = 2e-86, Method: Composition-based stats. Identities = 186/557 (33%), Positives = 257/557 (46%), Gaps = 87/557 (15%) Query: 8 AKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLP--------------EG 53 +LW C+ LRD GVS NY+ +L+ L+FLKM ET Q + P +G Sbjct: 2 DRLWNYCNVLRDDGVSASNYLEQLSLLVFLKMADETEQLNAHRPSADHEHMLPTAPEWQG 61 Query: 54 YRWDDLKSRIGQEQLQFYRKMLVHLG----EDDKKLVQAVFHNVSTTITEPKQITALV-S 108 W +L G + Y K+L+ LG ++D + +F+ I P + L+ Sbjct: 62 RGWPELIDLEGDPLEEAYSKLLIDLGRRTDQNDHTTLSLIFNRARNHIENPTHLRRLIVD 121 Query: 109 NMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPR 168 +D W N D G YE L+ ++A++TK+GAGQYFTPR LI++I+ ++P P Sbjct: 122 LIDKEKWRNSRS----DINGAAYEALIARSASDTKAGAGQYFTPRALIESIVRCMRPTPY 177 Query: 169 EVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMN 228 + + DPA GT GFLI A Y+ + D DL + + G E+VP T RLA MN Sbjct: 178 DTITDPACGTGGFLIAAYEYITREYGD--DLPDEDLHRLRTESIWGHEIVPATARLAAMN 235 Query: 229 CLLHDI-----EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTN------- 276 CLLH + E +D G A+ A +V NPPFG +G N Sbjct: 236 CLLHSLGDPTGEPIIDVGDALAKP--------PERHASLVLANPPFGRKSGINVSGKEAE 287 Query: 277 --------------ITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGT 322 T+NKQL F+QHI L GRAAV+VPD VL+EGG G+ Sbjct: 288 AEADDRDNVTYNRPDFWVGEQTTTNKQLNFLQHIGTQLTDKGRAAVIVPDGVLYEGGAGS 347 Query: 323 D---IRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYD 379 +RR+L+ +LHT+LRLP IFYA GVK +VLFF + D T VW YD Sbjct: 348 VGDLVRRELLTGYNLHTMLRLPENIFYAGGVKAHVLFFEAVPGHRADDDPPHTTYVWTYD 407 Query: 380 LRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTD 439 LRT+ K+ P EHL FE+ R + S Sbjct: 408 LRTDSRFTLKKNPMKPEHLADFEK--QAFDPSDPDRKHRKESD----------------- 448 Query: 440 QHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSE 499 R+R+ + + K +LDI+ L + S + D L G+L ALSE Sbjct: 449 ------RFRRHAAAELLAQKQVNLDIARLSPEASAAKEPTASIDALTRYVAGDLRSALSE 502 Query: 500 LDALMRELGASDEADLQ 516 ++A RELG A + Sbjct: 503 IEAFARELGVDLTAVSE 519 >UniRef50_Q7VG99 Type I restriction-modification system n=2 Tax=Bacteria RepID=Q7VG99_HELHP Length = 475 Score = 322 bits (825), Expect = 2e-86, Method: Composition-based stats. Identities = 193/520 (37%), Positives = 256/520 (49%), Gaps = 65/520 (12%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQ--EAEYLPEGYRWDD 58 M+ +VAK+W LRD GVSY YV +L+ LLFLKM E E +P +W+ Sbjct: 1 MSEKAIVAKVWNFATILRDSGVSYTEYVAQLSYLLFLKMESERESIGEHSKIPTSCKWER 60 Query: 59 LKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNG 118 L + G E Y L L + + ++ V+++ I EP + L MDS W Sbjct: 61 LINLDGLELESAYNAALAQLAKSE-GVIGLVYNDAQNKIKEPANLKKLFVLMDSETWL-- 117 Query: 119 AHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGT 178 G + D G +YEGLL KNA ETK+GAGQYFTPR LI +I+ L++ +P V DPA GT Sbjct: 118 --GLNVDVKGAIYEGLLAKNATETKAGAGQYFTPRVLIDSIVGLMELKPNMEVCDPACGT 175 Query: 179 AGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNL 238 GFL+ A +K+QT D + + G ++ P L MN LH I G Sbjct: 176 GGFLLSAYEAMKAQTKD-----KEEIKCLRNERLCGKDITPLVASLCAMNLYLHGIGGEG 230 Query: 239 DHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSA---------------AGTNITRTFVH 283 +G++L G + V TNPPFG F Sbjct: 231 GII---EIGDSLSELGN--RRFDRVLTNPPFGKKSATKILAENGKVKSQKDEYNREDFFA 285 Query: 284 PTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTG 343 TSNKQL F+QHI+ L GG+AAVV+PDNVLFE G G +R+ L++ +LHTILRLPTG Sbjct: 286 TTSNKQLNFLQHIMNLLKIGGKAAVVLPDNVLFEAGAGEKVRKKLLEDFNLHTILRLPTG 345 Query: 344 IFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFER 403 IFYAQGVK NVLFF K + + T VWVYD+RTNM +P + EHL+ FE Sbjct: 346 IFYAQGVKANVLFFDKVATSE-----DSTQKVWVYDMRTNMNLSLVTSPLSAEHLREFES 400 Query: 404 VYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSL 463 + +E R+R FS I+ +L Sbjct: 401 CFCVGAMENRKESE----------------------------RFRSFSIGEIKKRDKMNL 432 Query: 464 DISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDAL 503 DI WLKD+ D ++LP P L+ + L AL E++ L Sbjct: 433 DIFWLKDESLEDLENLPSPKDLSEQICISLKNALREIEQL 472 >UniRef50_Q72BC7 Type I restriction-modification system, M subunit n=21 Tax=Bacteria RepID=Q72BC7_DESVH Length = 506 Score = 322 bits (825), Expect = 2e-86, Method: Composition-based stats. Identities = 114/542 (21%), Positives = 194/542 (35%), Gaps = 84/542 (15%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQ--------------- 45 ++ ++ +W CD R G V Y + + ++LFLK + Q Sbjct: 5 ISQKEVNDAVWNACDTFR-GVVDASAYKDYVLTMLFLKYISDVWQDNYDTYKAEYGDAPE 63 Query: 46 --------EAEYLPEGYRWDDLKSRIGQE-QLQFYRKMLVHLGEDDKKLVQAVFHNVSTT 96 E LP+ + L R + + K L + E + + VF ++S Sbjct: 64 LIEEMMKNERFVLPKDASFYALYERRFEAGNGERIDKALHAIEEANMGKLNDVFQDISFN 123 Query: 97 -------ITEPKQITALVSNMDSLDWYNGAHGKSR-DDFGDMYEGLLQKNANETKSGAGQ 148 + + ++ + + D G+ YE L++ A + AG+ Sbjct: 124 STKLGDDKQKNDILRHMLEDFSKPELNLRPSRIGNLDIIGNAYEFLIKHFAASSGKKAGE 183 Query: 149 YFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQI 208 ++TP + + I L+ PQ + + DPA G+A L++ + +K + + Sbjct: 184 FYTPPEVSQLIAELVNPQEGDEICDPACGSASLLMKCAKLIKDRFGN------------R 231 Query: 209 HRAFIGLELVPGTRRLALMNCLLHDIEGN-LDHGGAIRLGNTLGSDGENLPKAHIVATNP 267 A G E + T LA MN LH + + ++ G +R L D L IV NP Sbjct: 232 KYALYGQEAIGSTWSLAKMNMFLHSEDNHRIEWGDTLRNPLLLDGDDH-LKHFDIVVANP 290 Query: 268 PFGSAAG---------TNITRTFVHPTSNKQLCFMQHIIETLHPG-GRAAVVVPDNVLFE 317 PF R + P + F+ H+IETL PG GR VVVP VLF Sbjct: 291 PFSLDKWGHEAAEADRFGRFRRGIPPKTKGDYAFILHMIETLKPGTGRMGVVVPHGVLFR 350 Query: 318 GGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWV 377 +IR+ L+ + L ++ LP +FY G+ +L F K N +V Sbjct: 351 ASSEGEIRKQLIKENLLDMVIGLPEKLFYGTGIPAAILVFRKNKKDN---------NVLF 401 Query: 378 YDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKN 437 D + DE +Q + +A EE + Sbjct: 402 IDASREYQDGKNQNFLRDEDIQKVLDTAKARES------------VDKYAYLATLEEIRE 449 Query: 438 TDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQAL 497 D +L R+ + + +D+ + + L + +V + EL Sbjct: 450 NDFNLNIPRYVDT------FEEEEEIDLEAVLKERKELKADLAKLEVEMEGYLKELGYLT 503 Query: 498 SE 499 E Sbjct: 504 GE 505 >UniRef50_B5Y2R2 Type I restriction-modification system, M subunit n=21 Tax=Bacteria RepID=B5Y2R2_KLEP3 Length = 814 Score = 322 bits (824), Expect = 3e-86, Method: Composition-based stats. Identities = 99/475 (20%), Positives = 181/475 (38%), Gaps = 67/475 (14%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEY----LPEGYRW 56 + +L + LW CD LR GG+ Y + + +LLF+K + + +P+G + Sbjct: 3 IKKTELYSSLWASCDELR-GGMDASQYKDYVLTLLFMKYVSDKYKGDPDGIILIPKGASF 61 Query: 57 DDLKSRIGQ-EQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEP--------KQITALV 107 DD+ + E K++ L E++ ++ V + ++T LV Sbjct: 62 DDMVALKNDKEIGDKINKIIRKLAEEND--LKGVIDEADFNDEDKLGKGKEMIDRLTKLV 119 Query: 108 SNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQP 167 + LD + D GD YE L++ A E+ GQ++TP + + + ++ P Sbjct: 120 GIFEGLDL-SSNRADGDDLLGDAYEYLMRHFATESGKSKGQFYTPAEVSRILAKVISITP 178 Query: 168 RE----VVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRR 223 V DP G+ L++ + + + G E+ T Sbjct: 179 DTPQDATVYDPTCGSGSLLLKVSD-----------------ETRRGLSIFGQEMDNATSA 221 Query: 224 LALMNCLLHDI-EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAG-------T 275 LA MN +LH+ + G + ++G L NPPF + Sbjct: 222 LARMNMILHNNATAKIWQGNTLSDPQWKEANG-KLKAFDFAVANPPFSNKNWTSGLDPKK 280 Query: 276 NITRTFV---HPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKC 332 + FV P N F+ HII++L G+ AV++P VLF G +IR +L+ + Sbjct: 281 DPFERFVWGVPPEKNGDYAFLLHIIKSLKSTGKGAVILPHGVLFRGNAEANIRENLIKQG 340 Query: 333 HLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTP 392 ++ I+ LP +FY G+ ++ K + +++ D G + Sbjct: 341 YIKGIIGLPANLFYGTGIPACIIVIDKEHAHSRKG-------IFMIDASRGFIKDGNKNR 393 Query: 393 FTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRW 447 + V+ RT +S +E+A + + +L R+ Sbjct: 394 LRSRDIHRIVDVFNH------QRTVSGYSRMVPLSEIAS----EQNNYNLNIPRY 438 >UniRef50_B8F3Y0 Type I restriction-modification system methyltransferase subunit n=26 Tax=Bacteria RepID=B8F3Y0_HAEPS Length = 562 Score = 320 bits (821), Expect = 6e-86, Method: Composition-based stats. Identities = 101/563 (17%), Positives = 182/563 (32%), Gaps = 105/563 (18%) Query: 4 NDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETG------------------- 44 N L A LWK D LR + NY + + L+FLK ++ Sbjct: 29 NKLDADLWKAADKLRQ-QLDAANYKHIVLGLIFLKYVSDSFSAQQEIIKQRYTDPTSDFY 87 Query: 45 ---------------------------QEAEYLPEGYRWDDLK----SRIGQEQ------ 67 ++P+ RWD++K + IG + Sbjct: 88 LDPTAYSESELADILNAELEERDNYAQDNVFWVPQQARWDEIKVVARANIGDKIWDEKTF 147 Query: 68 --LQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWY------NGA 119 + E D ++ V +S + + L+ ++ Sbjct: 148 KGIANLIDDAFDAIEQDNPKLKNVIQRISPYKVDESILLGLIDLFSDTNFTRPTLDGKPI 207 Query: 120 HGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTA 179 ++D G +YE L + A GQYFTP+ ++ II +L+P + DPA G+ Sbjct: 208 SLAAKDILGHVYEYFLGQFALAEGKKGGQYFTPKSIVTLIIEMLEPYKG-RIYDPAMGSG 266 Query: 180 GFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLD 239 GF ++ +R+++ ++ + G E P T +LA MN + IE + Sbjct: 267 GFFVQTERFIREHQGNVS-----------EVSIFGQEFNPTTWKLAAMNMAIRGIEFDFG 315 Query: 240 HGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAG-------TNITRTFVHPTSNKQLCF 292 G A +T + K V NPPF + + P N + Sbjct: 316 KGNA----DTFSNPQHRDKKMDFVMANPPFNMKDWWNESLAQDPRWQYGIPPEGNANFAW 371 Query: 293 MQHIIETLHPGGRAAVVVPDNVL-FEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVK 351 +QH+I L P GR A+++ + + +IR++++ + ++ LP+ +F + Sbjct: 372 LQHMIYHLSPNGRMALLLANGSMSSNTNNEGEIRKNILKADLVEAMIALPSQLFTNTQIP 431 Query: 352 TNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGK-RTPFTDEHLQPFERVYGEDPH 410 + K +V D R + FT + + Y Sbjct: 432 ACIWILNKNKA--------RKGEVLFIDARQLGYMKDRVLRDFTADDIAKVADTYHSWQQ 483 Query: 411 GLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKD 470 + A +E D L R+ + E + + L Sbjct: 484 SAD------YQNIPAFCYTASLDEIAQNDFVLTPGRYVG-AAEQEDDGVPFAEKMQELTA 536 Query: 471 KDSIDADSLPEPDVLAAEAMGEL 493 E + +G L Sbjct: 537 LLQQQFQQSAELEAKIKANLGGL 559 >UniRef50_UPI0001BC44FA type I restriction-modification system DNA methylase n=1 Tax=Fusobacterium gonidiaformans ATCC 25563 RepID=UPI0001BC44FA Length = 502 Score = 320 bits (821), Expect = 7e-86, Method: Composition-based stats. Identities = 90/528 (17%), Positives = 192/528 (36%), Gaps = 73/528 (13%) Query: 6 LVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMC-------------------KET--- 43 ++W L G + +Y + L+FL+ + Sbjct: 11 FEKEIWDAACVLW-GHIPAADYRKVIVGLIFLRYISSSFEKKYKELLEEGYGFEDDRDAY 69 Query: 44 -GQEAEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVS-TTITEPK 101 ++P+ RW + + ++ + E + K ++ V + + + + Sbjct: 70 MEDNIFFVPKEARWSTISAATHTAEIGMVIDNAMRAIEAENKTLKNVLPKIYASPDLDKR 129 Query: 102 QITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIH 161 + +V + + +S+D G YE + + A + G+++TP ++KTI+ Sbjct: 130 VLGEVVDLFTN-NINMEDTEESKDLLGRTYEYCIAQFAAYEGTKGGEFYTPSSIVKTIVE 188 Query: 162 LLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGT 221 +LKP V DP G+ G +++ +++++ + + + H + G E T Sbjct: 189 ILKPFDNCRVYDPCCGSGGMFVQSVKFLQAHSGNRN-----------HISVFGQESNADT 237 Query: 222 RRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAG------- 274 ++A MN + I+ N +T +D + KA + NPPF + Sbjct: 238 WKMAKMNMAIRGIDANFGPY----QADTFFNDLHSTLKADFIMANPPFNLSNWGQDKLQD 293 Query: 275 TNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGT-DIRRDLMDKCH 333 + + P N ++QH++ L P G+ +V+ + L G +IR+ +++ Sbjct: 294 DVRWKYGLPPAGNANYAWIQHMVHHLAPNGKIGLVLANGALSTQTSGEGNIRKAIIEDDL 353 Query: 334 LHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSF-GKRTP 392 + I+ +PT +FY+ + + F +K D R K Sbjct: 354 IEGIVAMPTQLFYSVTIPVTLWFISKNK--------KQKGKTLFIDARNMGFMVDRKHRD 405 Query: 393 FTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSR 452 FT+E +Q + G+ +G V ++EE + D L R+ + Sbjct: 406 FTEEDIQKLANTFTHFQEGILEDEKG-------FCAVVETEEIRKQDYILTPGRYVGIAD 458 Query: 453 EWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSEL 500 ++K + L + + E E+ + L + Sbjct: 459 PEDDGEP--------FEEKMTRLTSELSDMFEKSHELEDEIRKKLGAI 498 >UniRef50_A1U632 N-6 DNA methylase n=17 Tax=cellular organisms RepID=A1U632_MARAV Length = 570 Score = 320 bits (820), Expect = 8e-86, Method: Composition-based stats. Identities = 108/590 (18%), Positives = 195/590 (33%), Gaps = 110/590 (18%) Query: 1 MNNND------LVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKE------------ 42 MNN + L KLWK D LR + NY + + L+FLK + Sbjct: 1 MNNTEQQFLKALDDKLWKAADKLRA-NLDAANYKHVVLGLIFLKYVSDAFEERQEELLER 59 Query: 43 ------------------------------------TGQEAEYLPEGYRWDDLKSRIGQE 66 ++P+ RW LK + Sbjct: 60 FKDQNDDIYYLPPEDYDGHEDYQQALLEELEILDYYREANVFWVPKPARWSTLKEKAVLP 119 Query: 67 QLQ------------------FYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVS 108 L + + + ++ + + +S + ++ L++ Sbjct: 120 VGTVLWQDDAGNDVKLRSVSWLIDNALEEIEKSN-AKLKGILNRISQYQLDNDKLLGLIN 178 Query: 109 NMDSLDWY------NGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHL 162 + S+D G +YE L + A GQY+TP+ ++ I+ + Sbjct: 179 TFSDTSFTRPVFEGEKLSLHSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEM 238 Query: 163 LKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTR 222 L+P V DPA G+ GF + +D++++ ++ D + + H + G E P T Sbjct: 239 LQPYSG-RVYDPAMGSGGFFVSSDKFIEEHASE---QHYDAGEQKKHISVYGQESNPTTW 294 Query: 223 RLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAG-------T 275 RLA MN + I+ N A +T D +A V NPPF Sbjct: 295 RLAAMNMAIRGIDFNFGKKNA----DTFLDDQHPDLRADFVMANPPFNIKDWWSESLADD 350 Query: 276 NITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVL-FEGGKGTDIRRDLMDKCHL 334 + P N +MQH++ L P G A+++ + + +IR+ L+++ + Sbjct: 351 VRWKYGTPPKGNANFGWMQHMLHHLAPTGSMALLLANGSMSSNTNNEGEIRKRLVEEDLV 410 Query: 335 HTILRLPTGIFYAQGVKTNVLFFTKGTVA---NPNQDKNCTDDVWVYDLRTNMPSFGK-R 390 ++ LP +F + + F TK + ++ ++ D R + Sbjct: 411 ECMVALPGQLFTNTQIPACIWFLTKDKANGMVRNEKKRDRREEFLFIDARNLGFMRDRVL 470 Query: 391 TPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKF 450 FT++ + + G + A + A +E K D L R+ Sbjct: 471 RDFTNDDVAKIADTFHAWQRG------EGYEDVAGFCKSASLDEIKKHDFVLTPGRYVGA 524 Query: 451 SREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSEL 500 + + + E D L AE L EL Sbjct: 525 QEQEDDGEPF----AEKMARLTGQLREQFAESDRLEAEIKRNLGGLGYEL 570 >UniRef50_A6WNE4 Type I restriction-modification system, M subunit n=1 Tax=Shewanella baltica OS185 RepID=A6WNE4_SHEB8 Length = 847 Score = 318 bits (816), Expect = 3e-85, Method: Composition-based stats. Identities = 101/497 (20%), Positives = 179/497 (36%), Gaps = 82/497 (16%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEY----LPEGYRW 56 + N+L + LW CD LR GG+ Y + + +LLF+K + + Y +P+G + Sbjct: 3 IKKNELYSSLWASCDELR-GGMDASQYKDYVLTLLFMKYVSDKYKGDPYGMIVVPKGASF 61 Query: 57 DD-LKSRIGQEQLQFYRKMLVHLGEDD--KKLVQAVFHNVSTTITEP----KQITALVSN 109 DD + ++ +E K++ L E++ K ++ N + + ++T LV Sbjct: 62 DDMIAAKNDKEIGDKLNKIIGSLAEENDLKGVIDVADFNDEDKLGKGKEMVDRLTKLVGI 121 Query: 110 MDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPRE 169 LD G D GD YE L++ A E+ GQ++TP + + + ++ Q Sbjct: 122 FQGLDLT-GNRADGDDLLGDAYEYLMRHFATESGKSKGQFYTPSEVSQILAKVVGIQNNT 180 Query: 170 ----VVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLA 225 V DP G+ L++A + + G E+ T LA Sbjct: 181 PQDATVYDPTCGSGSLLLKASN-----------------EAPRGLSIFGQEMDNATSALA 223 Query: 226 LMNCLLHDI-EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAG---------- 274 MN +LH+ + G + L NPPF + Sbjct: 224 RMNMILHNNATAKIWKGNTLADPQW-KDGANKLKTFDFAVANPPFSNKNWTSGLNPLNDP 282 Query: 275 TNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHL 334 P N F+ HII +L G+ AV++P VLF G +IR++L+ + ++ Sbjct: 283 YGRFTWGTPPEKNGDYTFLLHIITSLKSTGKGAVILPHGVLFRGNAEANIRQNLIKQGYI 342 Query: 335 HTILRLPTGIFYAQGVKTNVLFFTK------------------------GTVANPNQDKN 370 I+ LP +FY G+ ++ K G NQ Sbjct: 343 KGIIGLPANLFYGTGIPACIIVIDKEHAQKAAVHFGEALQGERPLIEGHGNDVKNNQTHI 402 Query: 371 CTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVA 430 +++ D G + + + V+ + + + Sbjct: 403 TGRSIFMIDASKGFIKDGNKNRLRSQDIHKIVDVFNKGLELE------------RFSRLV 450 Query: 431 DSEENKNTDQHLATSRW 447 +E D +L R+ Sbjct: 451 TIDEIAKNDYNLNIPRY 467 >UniRef50_C6DZ06 Type I restriction-modification system, M subunit n=28 Tax=cellular organisms RepID=C6DZ06_GEOSM Length = 827 Score = 318 bits (814), Expect = 4e-85, Method: Composition-based stats. Identities = 95/486 (19%), Positives = 176/486 (36%), Gaps = 68/486 (13%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAE------YLPEGY 54 + +DL + LW CD LR GG+ Y + + +LF+K + +A+ +P G Sbjct: 3 VKKSDLYSSLWASCDELR-GGMDASQYKDYVLFMLFIKYISDKYADADCFAPAVVIPPGA 61 Query: 55 RWDD-LKSRIGQEQLQFYRKMLVH--LGEDDKKLVQAVFHNVSTTIT------EPKQITA 105 + D + + + + ++ + ++++L ++ F + + +++T Sbjct: 62 SFKDMIVLKGKSDIGEKINTQVIAPLVKSNERRLGRSDFPDFDDPNRLGEGQAKVERLTN 121 Query: 106 LVSNMDSLDWYNGAHGKS-RDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLK 164 L+S ++ + D GD YE L++ A E+ GQ++TP + + + ++ Sbjct: 122 LISIFENPALDFSKNRAEHDDILGDAYEYLMRHFATESGKSKGQFYTPSEVSRVVAKVIG 181 Query: 165 PQPREVV-----QDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVP 219 +V DP G+ L++ G E Sbjct: 182 ISRANIVASTSAYDPTCGSGSLLLKVAEEAGKHI-----------------TLEGQEKDV 224 Query: 220 GTRRLALMNCLLHDIE-GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAG---- 274 T LA MN +LH N+ G + DG+ L V NPPF Sbjct: 225 TTAGLARMNMILHHFPTANILSGNTLAAPKF--KDGKQLRTYDYVVANPPFSDKTWSTGL 282 Query: 275 ------TNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDL 328 V PT ++ HII ++ G+AA ++P VLF G IR+ L Sbjct: 283 LPANDDFERFAWGVPPTKQGDYAYLLHIIRSMKSTGKAACILPHGVLFRGNAEATIRKQL 342 Query: 329 MDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFG 388 + +L I+ LP +FY G+ +L K A V++ D G Sbjct: 343 VRSGYLKGIIGLPANLFYGTGIPACILVLDKENAAGRKG-------VFMIDASKGFIKDG 395 Query: 389 KRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWR 448 + D+ + + ++ ++ E+A D +L R+ Sbjct: 396 NKNRLRDQDIHKIVDTF-----ARQDDSDPRYARLVPFDEIAA----PANDYNLNLPRYI 446 Query: 449 KFSREW 454 + Sbjct: 447 DSTIPE 452 >UniRef50_C3JA79 Type I restriction-modification system, M subunit n=2 Tax=Bacteria RepID=C3JA79_9PORP Length = 823 Score = 315 bits (807), Expect = 3e-84, Method: Composition-based stats. Identities = 102/555 (18%), Positives = 198/555 (35%), Gaps = 64/555 (11%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEY---LPEGYRWD 57 + + L LW+ C+ LR G + Y + + +LF+K + + + +PEG + Sbjct: 3 IKKSQLYRTLWESCNALR-GSMDASQYKDYVLIILFVKYLSDKAGQPGFRLNIPEGCSFR 61 Query: 58 DLKS-RIGQEQLQFYRKMLVHLGEDDKKLVQAV----FHNVSTT---ITEPKQITALVSN 109 D S + + + L + E + + + + F++ + T + ++ L+ Sbjct: 62 DFVSLKQNDKIGELMNIKLEAIKEMNARQIGDLALPNFNDPAKLGIGRTMVETLSRLIGV 121 Query: 110 MDSLDW-YNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQP- 167 ++ ++ D GD YE L++ A E+ GQ++TP + + + +L+ Sbjct: 122 FENDALDFSRNRAADDDLLGDAYEYLMKNFAAESGRRKGQFYTPAEVSRVMAKVLRIHEL 181 Query: 168 ---REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRL 224 + + DP G+ L+ A + + G E T L Sbjct: 182 DRGEQTIYDPTCGSGSLLLRAL----------------AEASNPRVSICGQEKDGTTAAL 225 Query: 225 ALMNCLLHDIE-GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAG--------- 274 A MN LLH I + G + G+ L + NPPF Sbjct: 226 AKMNMLLHGISNSEIKVGDTL--GDPQFKQMGILSTFDVCVANPPFSEKEWFSPALEKDT 283 Query: 275 -TNITRTFVHPTSNKQLCFMQHIIETLH-PGGRAAVVVPDNVLFEGGKGTDIRRDLMDKC 332 T+ + P F+ H+I ++ GR A ++P VLF G IR+D++ K Sbjct: 284 YERWTKELLPPAKCGDYAFLMHLIASMKSEEGRGACILPHGVLFRGNAEYTIRKDIIRKR 343 Query: 333 HLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTP 392 ++ I+ LP +F+ G+ +++ K D++ ++ D + G + Sbjct: 344 YIKGIIGLPANLFFGTGIPASIIVIDKK-------DRDSRKGIFFIDAKEGYMKDGAKNR 396 Query: 393 FTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSR 452 ++ ++ + EWS E+K D +L R+ + Sbjct: 397 LREQDIKRIVDAWEAQQPIPHYCRMVEWSEI----------ESKKNDYNLNIPRYIQPRD 446 Query: 453 EWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALMRELGASDE 512 I+ L + L + E L E+ ++ + Sbjct: 447 TEIQHDIEAHLHGGLPAHDIELMEPYWAACPSLRGQIFEENNNGYYSLKPTKEEISSTID 506 Query: 513 ADLQRQLLEEAFGGV 527 D + EAF V Sbjct: 507 HDPSYKSQGEAFSSV 521 >UniRef50_Q3ADV1 Type I restriction-modification system, M subunit n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ADV1_CARHZ Length = 814 Score = 315 bits (806), Expect = 4e-84, Method: Composition-based stats. Identities = 105/569 (18%), Positives = 200/569 (35%), Gaps = 90/569 (15%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQ--------------- 45 + L L+K D LR G + Y + +LFLK + Sbjct: 8 ITLAQLETHLFKAADILR-GKMDASEYKEYIFGMLFLKYTSDVFAAKKLELENMYKNLGF 66 Query: 46 ---------------EAEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKL---VQ 87 + Y+P RW+ + + ++ K L L E + +L ++ Sbjct: 67 SDEQIKELTEDPNSYDIFYVPPKARWEYILNL-KEDVGNQLNKALSALEEANPELDGVLK 125 Query: 88 AVFHNVST--TITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSG 145 + N + + +Q+ L+ + + + D G YE LL++ A+ Sbjct: 126 HIDFNATKGKIKLKDQQLIDLIHHFNKYTLTPESFEFP-DLLGAAYEYLLKEFADSAGKK 184 Query: 146 AGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQD 205 G+++TP + K ++ L+KP V DP G+ GFLIEA YV+ + D +L Sbjct: 185 GGEFYTPAGVKKLMVRLVKPGENMTVYDPTVGSGGFLIEAFHYVEEKGQDRYNLG----- 239 Query: 206 FQIHRAFIGLELVPGTRRLALMNCLLHDI-EGNLDHGGAIRLGNTLGSDGENLPKAHIVA 264 G EL T + MN +LH I + ++++ + L + + + V Sbjct: 240 ------LYGQELNGLTWSICKMNMILHGISDAHIENEDVLTTPMFL--ENGYIKRFDRVL 291 Query: 265 TNPPFGSAAGT------NITRTFVHPT--SNKQLCFMQHIIETLHPGGRAAVVVPDNVLF 316 NPPF + P L F+QH+I +L G A V+P VLF Sbjct: 292 ANPPFSENYTRANMQYPERFKYGFTPETGKKADLMFLQHMIASLKDDGIMATVMPHGVLF 351 Query: 317 EGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVW 376 GG+ IR ++ + + I+ LP +FY G+ ++ K + + + Sbjct: 352 RGGQEKVIREGIVKEGIIEAIIGLPPKLFYNTGIPACIIVINKNKPEHLK------NKIL 405 Query: 377 VYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENK 436 + + E ++ V+ + +S + E+ +++ N Sbjct: 406 FINADREYGEGRNQNFLRPEDIEKIVNVF------DEKKEIPGYSRLVDIKEIEENDFNL 459 Query: 437 NTDQHLA------------------TSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADS 478 N +++ R + E + + KD+ ++ + Sbjct: 460 NIRRYVDNSPEPEIEDVRAHLTGGVPLREVRRYEEQFKKFGISYAILLEKKDEHYLEFND 519 Query: 479 LPEPDVLAAEAMGELVQALSELDALMREL 507 L E + + + + L Sbjct: 520 LITEKSQIREVLENANEVKNTIAKHKEML 548 >UniRef50_B0TYP3 Type I restriction-modification system methyltransferase subunit like protein n=14 Tax=Bacteria RepID=B0TYP3_FRAP2 Length = 531 Score = 314 bits (804), Expect = 6e-84, Method: Composition-based stats. Identities = 110/552 (19%), Positives = 201/552 (36%), Gaps = 79/552 (14%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA-------------- 47 N + LW + LR G V Y + + L+FLK +T +E Sbjct: 9 NTKSMEETLWDSANKLR-GSVESSEYKHIVLGLIFLKFVSDTFEERREQLIAEGKEAFID 67 Query: 48 ----------EYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTI 97 YLPE RW +K Q+ + + E + ++ + + Sbjct: 68 MVEFYTMENVFYLPEESRWSYIKQNAKQDDIALKIDTALSTIEKNNPSLKGALPDNYFSR 127 Query: 98 TEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIK 157 ++ L S +D+++ N K D G +YE L K A G G+++TP+ ++ Sbjct: 128 L-GLDVSKLSSLIDTINNINTIADKGNDIVGRVYEYFLSKFAIAEGKGKGEFYTPKSIVN 186 Query: 158 TIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLEL 217 I ++++P + DPA G+ G +++ +++++ + D+ + G E Sbjct: 187 LIANMIEPYKG-KIYDPACGSGGMFVQSIKFIEAHKGNKKDI-----------SIYGQEY 234 Query: 218 VPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNI 277 T +LA MN + I NL A +T D KA + NPPF + Sbjct: 235 TGTTYKLAKMNLAICGISANLGDVPA----DTFFKDQHPDLKADFIMANPPFNQKDWRGV 290 Query: 278 TR---------TFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDL 328 V P SN ++ +I+ L G A ++ + L GG+ IR+ L Sbjct: 291 NELLDDPRWAGYDVPPKSNANYGWILNIVSKLSQNGVAGFILANGALSGGGEEYKIRKKL 350 Query: 329 MDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANP-------NQDKNCTDDVWVYDLR 381 ++ + IL LP +FY + + ++ T ++ DLR Sbjct: 351 IENDLVEAILILPQNMFYTTNISVTIWILNANKKQREFEQNGKQKNHRDRTKEILFMDLR 410 Query: 382 TNMPSFGKR-TPFTDEHLQPFERVYGEDP----HGLSPRTEGEWSFNAEETEVADSEENK 436 F K+ F ++++Q Y H + E + +E Sbjct: 411 QKGVPFEKKFIQFDEKNIQEISNTYHTWQSIGGHSKIDSESQGYKDIPEYCKSVTLDEVI 470 Query: 437 NTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQA 496 D L S++ +F +D++ + + E + + Q+ Sbjct: 471 AKDYSLVPSKYIEFVN----------------RDENIDFDEKMKNLQTEFRELLKQEEQS 514 Query: 497 LSELDALMRELG 508 EL + +ELG Sbjct: 515 KKELLKVFKELG 526 >UniRef50_A3XVM8 Type I restriction-modification system M subunit n=1 Tax=Vibrio sp. MED222 RepID=A3XVM8_9VIBR Length = 812 Score = 312 bits (800), Expect = 2e-83, Method: Composition-based stats. Identities = 97/498 (19%), Positives = 175/498 (35%), Gaps = 80/498 (16%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQE-------------- 46 ++ L + LW+ D LR G + +Y + +LFLK + ++ Sbjct: 5 LSLQQLESFLWESTDILR-GSLDAADYRENILGMLFLKRLSDVFEDKKQKVIQHYIDNGR 63 Query: 47 -----------------AEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAV 89 ++PE W L + + +E Q + ++ + E + +L + Sbjct: 64 TKEQAKELARNRSEYVNTFFVPENANWSAL-TNVKEEIGQSLDRSMLAIEEHNSELKNVL 122 Query: 90 --FHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAG 147 T Q+ LV + + D G YE L++ A+ Sbjct: 123 TSIDFGKKTRLSNAQLRDLVLHFSKCRLLDEDFECP-DILGKAYEYLIKMFADSAGRKGS 181 Query: 148 QYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQ 207 ++TPR ++K ++ LL+P V DP G G L+++ Y+K D Sbjct: 182 GFYTPREVVKLMVSLLEPSSGMSVYDPTVGAGGMLVQSRNYLKDIGKD------------ 229 Query: 208 IHRAFIGLELVPGTRRLALMNCLLHDIEG-NLDHGGAIRLGNTLGSDGENLPKAHIVATN 266 ++ + G E+ GT + MN L ++ HG +R ++ L V ++ Sbjct: 230 VNLSLYGQEVNQGTWTICRMNMFLQGESNVDIRHGDTLRNPKH--TEANRLITFDRVISH 287 Query: 267 PPFGSAAG---------TNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFE 317 PPF + + P ++ F+QH + T++ GRA VV+P L Sbjct: 288 PPFSLKEWGGDELSNDTFGRFKYGIPPRNSGDFAFIQHTLATMNESGRAVVVLPHGPLHR 347 Query: 318 GG-KGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVW 376 G DIRR +++ + ++ LP GIFY G+ T +L K + V Sbjct: 348 AGKSELDIRRGMLEDDVIEAVIGLPAGIFYGTGIPTCLLILNKCK------GRKQRGKVL 401 Query: 377 VYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENK 436 D S E + + YG+ + + +E Sbjct: 402 FVDASNGFKSNKWMMELRGEDSEKILKAYGDFES------------IGSFSRIVTVDEIL 449 Query: 437 NTDQ-HLATSRWRKFSRE 453 L + S + Sbjct: 450 KDKYCRLTIRLYIDDSED 467 >UniRef50_A6NS04 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NS04_9BACE Length = 524 Score = 312 bits (799), Expect = 2e-83, Method: Composition-based stats. Identities = 98/549 (17%), Positives = 176/549 (32%), Gaps = 109/549 (19%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA-------------- 47 D+ L + D LR + NY + + ++F+K ++ ++A Sbjct: 3 TKKDIENALMRGADTLR-DTIDAANYKDYVLPIMFVKYLSDSYEDALDELKKEYSGIRLE 61 Query: 48 -------EYLPEGYRWDDL-KSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITE 99 + E + L R + Q + + D+ + + V + V Sbjct: 62 RQKRYLPFTIAEECSFQSLYDQRFSDKIGQLINAAMRKIEADNNQQLAGVLNTVDYNSEN 121 Query: 100 P--------KQITALVSNMDSLDWYNGAHGK-----SRDDFGDMYEGLLQKNANETKSGA 146 + L+ + +SL D GD YE ++ + A+ A Sbjct: 122 ALGTLDHKKAILRDLLEDFESLSLRPSEIEVKAGQVPADVIGDAYEYMIGQFASMAGKKA 181 Query: 147 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDF 206 G ++TP + + + ++ QP E V DP G+ LI+A + + Sbjct: 182 GSFYTPAAVSEIMARIVDVQPGERVYDPTCGSGSLLIKAAK----------------KQN 225 Query: 207 QIHRAFIGLELVPGTRRLALMNCLLHDI-EGNLDHGGAIRLGNTLGSDGENLPKAHIVAT 265 + G E+ + +A MN +H+I + + G + L SDG L + Sbjct: 226 SKEVSIYGQEVNGSSVAMAKMNMYIHEIRDAKIAWGDTLANPLFLDSDGNLLL-FDAIVA 284 Query: 266 NPPFGSAAG--------------------------TNITRTFVHPTSNKQLCFMQHIIET 299 N PF + V P S F+ H+I + Sbjct: 285 NMPFSKDKWASGFNPGGESSGKGKKEFKMEASLDKFHRFDWGVPPASKGDWAFLLHMIAS 344 Query: 300 LHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTK 359 L GR A V P VLF G IR+ ++++ L ++ LP +FY + +L F K Sbjct: 345 LSVNGRIAAVAPHGVLFRGAAEGRIRQKVIEENLLDAVIGLPENLFYGTSIPACILVFKK 404 Query: 360 GTVANPNQDKNCTDDVWVYDLRTN-------MPSFGKRTPFTDEHLQPFERVYGEDPHGL 412 D+ D + EH+ Y Sbjct: 405 NRT---------NTDILFIDASKKDENGNPRYIKASNQNELAPEHIDAIVEAYQTR---- 451 Query: 413 SPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRK-FSREWIRTAKSDSLDISWLKDK 471 + + VA EE + + +L R+ F E + +I LK + Sbjct: 452 --------TDKDKFAHVATLEEIQENEYNLNIPRYVDTFEEEEPIDIQKVQANIDRLKAE 503 Query: 472 DSIDADSLP 480 + + Sbjct: 504 IAEAETQMD 512 >UniRef50_B1MYY1 Type I restriction-modification system, M subunit n=2 Tax=Lactobacillales RepID=B1MYY1_LEUCK Length = 531 Score = 312 bits (799), Expect = 2e-83, Method: Composition-based stats. Identities = 114/587 (19%), Positives = 198/587 (33%), Gaps = 130/587 (22%) Query: 6 LVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEG------------ 53 L +LW D LR G + Y N L L+F K ++ Y E Sbjct: 5 LEQQLWAAADILR-GKMDASEYKNYLLGLVFYKYLSDSELREVYEQENGQTTDFPTRSIQ 63 Query: 54 ----YRWDDLKSRIGQEQLQFYRKML---------------------------VHLGEDD 82 W + S E +Q + + E Sbjct: 64 YQTLMDWFEDDSEELAEIIQLQKGYFIKPSQLFYTYRQQADRYEFNLTDLQAGFNELERQ 123 Query: 83 KKLVQAVFHNVSTTITE--------PKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGL 134 + +F ++ T+ IT ++ +D +D + D GD YE L Sbjct: 124 GDQFKGLFADIDLNSTKLGSNAQQRNVTITEVLRALDEIDLF----EHDGDVIGDAYEYL 179 Query: 135 LQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREV----VQDPAAGTAGFLIEADRYVK 190 + + A AG+++TP+ + + I + + + DP G+ ++ RY+ Sbjct: 180 IGQFAAGAGKKAGEFYTPQAVSRIISEIAAIGQEDRAPFHIYDPTMGSGSLMLNIRRYLS 239 Query: 191 SQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTL 250 + + G EL T LA MN +LH ++ + + G+TL Sbjct: 240 N---------------PKQVHYHGQELNTTTYNLARMNLILHGVDQDRM---NLNNGDTL 281 Query: 251 GSDG--ENLPKAHIVATNPPFGSAAG-------TNITRTF--VHPTSNKQLCFMQHIIET 299 +D E + V NPP+ + F + P S F+ H Sbjct: 282 DADWPTEEPHQFDAVVMNPPYSAKWSAADKFLSDQRFERFGKLAPKSKADFAFLLHGFYH 341 Query: 300 LHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTK 359 L G +V+P VLF G IR+ L++ + ++ LP IFY + T V+ K Sbjct: 342 LKDSGTMGIVLPHGVLFRGAAEGTIRQALLEMGAIDAVIGLPANIFYGTSIPTTVIILKK 401 Query: 360 GTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGE 419 + DV D + + + +H+Q Y E Sbjct: 402 NRSSR---------DVLFIDASQDFDKQKTQNVLSPKHIQKIVSAYKERTDTE------- 445 Query: 420 WSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSL 479 + + VA +E K D +L R+ + +D+ +D L Sbjct: 446 -----KYSHVASYDEIKENDFNLNIPRY-----------------VDTFEDEAPVD---L 480 Query: 480 PEPDVLAAEAMGELVQALSELDALMRELGASDEADLQRQLLEEAFGG 526 + ++ EL + S+L A+M EL ++E+ L + + G Sbjct: 481 VKVSDEISKIDQELSEKQSDLLAMMNELAVNEESQLIIESTKRILAG 527 >UniRef50_Q6YRQ9 Slr6095 protein n=4 Tax=Bacteria RepID=Q6YRQ9_SYNY3 Length = 477 Score = 310 bits (793), Expect = 1e-82, Method: Composition-based stats. Identities = 88/458 (19%), Positives = 162/458 (35%), Gaps = 72/458 (15%) Query: 34 LLFLKMCKETGQE------------------------------AEYLPEGYRWDDLKSRI 63 +LFLK + ++ ++PE RW ++ + Sbjct: 1 MLFLKRASDVFEQQYQQIIRDNLAKGRSEEEAKQRAERASSYQDFFVPERARWATIRDEL 60 Query: 64 GQEQLQFYRKMLVHLGEDD---KKLVQAVFHNVS--TTITEPKQITALVSNMDSLDWYNG 118 K L L E + ++ + N T ++ L+ + + N Sbjct: 61 HDNVGNGLNKALAALEESNVALSGVLGHIDFNRKVGKTTLSDTKLRELIFHFNKYRLLNE 120 Query: 119 AHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGT 178 D G YE L+ + A+ G+++TPR +++ ++ L+KP + DP G+ Sbjct: 121 DFVFP-DLLGAAYEYLIAEFADSAGKKGGEFYTPRDVVQLMVRLVKPAAGMSIYDPCVGS 179 Query: 179 AGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI-EGN 237 G LI+A +Y++ D +L + G + G + +N LLH I + Sbjct: 180 GGMLIQAKQYIEECGGDSRNL-----------SLCGQDNNGGVWAICKINMLLHGIKDAR 228 Query: 238 LDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGT------NITRTFVHPTS--NKQ 289 +++ ++ + L + V +NPPF N P S Sbjct: 229 IENEDTLQNPRHIVD--GELERFDRVLSNPPFSQNYEKTNLEFKNRFNHGWCPESGKKAD 286 Query: 290 LCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQG 349 L F QH++ L GG A V+P VLF GG IR+ L++K + I+ LP +FY G Sbjct: 287 LMFAQHMLSVLKVGGIVATVMPHGVLFRGGDEQKIRKSLIEKDQIEAIIGLPPNLFYGTG 346 Query: 350 VKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDP 409 + +L + + V + + + EH++ + Sbjct: 347 IPACILVMRRAG----EKLPERRGKVLFINADAEFYAGRAQNYLKPEHIEKIVNAFEAFV 402 Query: 410 HGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRW 447 ++ +A E D + R+ Sbjct: 403 D------IPGYAAVVSREILAAEE----NDFNCNIRRY 430 >UniRef50_A6LK23 Type I restriction-modification system, M subunit n=1 Tax=Thermosipho melanesiensis BI429 RepID=A6LK23_THEM4 Length = 799 Score = 310 bits (793), Expect = 1e-82, Method: Composition-based stats. Identities = 106/559 (18%), Positives = 202/559 (36%), Gaps = 74/559 (13%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEY----LPEGYRW 56 M L LW+ + LR GG+ Y N + ++LF+K + + Y +PE + Sbjct: 3 MRKTQLYTHLWEAANELR-GGMDASQYKNYVLTILFVKYVTDRYKNDPYADFVVPEDGSF 61 Query: 57 DDLKSRIGQ-EQLQFYRKMLVHLGEDD--KKLVQAVFHNVSTTITEP----KQITALVSN 109 D L G+ + + K+L L E++ K ++ V + ST + ++T L++ Sbjct: 62 DALVEAKGKPDIGERINKVLARLAEENELKGVIDLVDFDDSTKLGNGKDKVDKLTKLIAI 121 Query: 110 MDSLDW-YNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQ-- 166 ++ + ++ D GD+YE ++K A E GQ++TP + + + ++ + Sbjct: 122 FENPELNFSKNRADGDDILGDVYEYFMKKFATEAGKSKGQFYTPAEVSRIMAKIIGIENA 181 Query: 167 --PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRL 224 P + DP G+ L++ + + + G E+ L Sbjct: 182 NSPDQTAYDPTCGSGSLLLKVAD-----------------EAPVEISLYGQEIDIDVANL 224 Query: 225 ALMNCLLHDI-EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTN------- 276 A MN +LH + ++ G + DG +L NPPF N Sbjct: 225 ARMNMILHGKPDAVIEQGNTLSDPKFKNKDG-SLKTFDFAVANPPFSQKNWMNGVDPEND 283 Query: 277 ---ITRTFVHPTSNKQLCFMQHIIETLHPG-GRAAVVVPDNVLFEGGKGTDIRRDLMDKC 332 + P N F+ H I++L PG GR A+++P VLF G +IRR+L+ K Sbjct: 284 SFHRFDDGIPPAKNGDYAFLLHFIKSLKPGKGRGAIILPHGVLFRGNAEAEIRRNLVKKG 343 Query: 333 HLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTP 392 ++ I+ LP +FY G+ ++ K +++ D G + Sbjct: 344 YIKGIIGLPPNLFYGTGIPAIIMVIDKENAHARKG-------IFMIDASKGFRKDGPKNR 396 Query: 393 FTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSR 452 + + + + + EE + D +L R+ + Sbjct: 397 LRERDIHKIVTTFVNFEE------------IPGYSRMVSLEEIEKNDYNLNIPRYVDSTE 444 Query: 453 EWIRTAKSDSL-------DISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALMR 505 E L DI +++ E + L + L + Sbjct: 445 EEDIQDIHAHLHGGIPKRDIDKIEELKIFKGLK-KELFEEKEDCYYRLKVGIELLQEFIE 503 Query: 506 ELGASDEADLQRQLLEEAF 524 D+ ++ + + Sbjct: 504 IHEEIDKFKNNALMIFKNW 522 >UniRef50_Q3A0E7 Type I restriction-modification system methyltransferase subunit n=26 Tax=Bacteria RepID=Q3A0E7_PELCD Length = 708 Score = 310 bits (793), Expect = 1e-82, Method: Composition-based stats. Identities = 92/541 (17%), Positives = 184/541 (34%), Gaps = 75/541 (13%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA------------- 47 ++ + L + LW LR G + +Y + LLF K + E Sbjct: 2 ISQSQLESYLWGAATLLR-GYIDAGDYKQFIFPLLFYKRLCDVYDEELADALEESGGDQE 60 Query: 48 ---------EYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTIT 98 +PE W ++++ + + L + + + VF + T Sbjct: 61 YAALPEQHRFQIPEDAHWKATRTKVK-NVGKVIQDALRAIETANPDTLYGVFGDAQWTNK 119 Query: 99 E---PKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPL 155 + + + L+ + S D+ G YE L++K A+++ A +++T R + Sbjct: 120 DRLPDRMLRELIEHFSS--QTLSLSNCPEDELGVGYEFLIKKFADDSGHTAAEFYTNRTV 177 Query: 156 IKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGL 215 + + +L+P+P E + DP G+AG L+ A ++K Q + +L G Sbjct: 178 VHLMTEMLEPRPGESIYDPTCGSAGMLLSAVAHLKRQNKEWRNL-----------RLFGQ 226 Query: 216 ELVPGTRRLALMNCLLHDI-EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAG 274 E T + MN LH I + + G + + +G+ L + +V NPP+ Sbjct: 227 ERNLLTSAIGRMNLFLHGIEDFRIVRGDTLANPAFV--EGDRLKQFDVVLANPPYSIKQW 284 Query: 275 TN---------ITRTFVHPTSNKQLCFMQHIIETLHPG-GRAAVVVPDNVLFEGGKGTDI 324 P F QHII+++ GR A++ P VLF + + Sbjct: 285 DRDAWSADSWGRNLYGTPPQGRADYAFWQHIIKSMKAKSGRCAILFPHGVLFR-NEELAM 343 Query: 325 RRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNM 384 R L+ + +L L +FY ++ V+ K + V + + Sbjct: 344 REKLVAHDVVECVLGLGPNLFYNSPMEACVVICRMNKP------KERRNKVLFINAVNEV 397 Query: 385 PSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLAT 444 ++ TD+H+Q Y + V +E + +L+ Sbjct: 398 TRERAQSFLTDDHIQHIVAAYQ------------TFGDEDGFARVVGDDEIREKGSNLSI 445 Query: 445 SRWRKFSREWIRTAKSD---SLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELD 501 + + + I+ + S+ + + + + Sbjct: 446 PLYVRADNSNAQERSETFGLQQAIADWQKSSKALRKSMDYLFGILEGVSSKTDAPIRTIT 505 Query: 502 A 502 Sbjct: 506 K 506 >UniRef50_D1XRZ6 N-6 DNA methylase n=1 Tax=Streptomyces sp. ACTE RepID=D1XRZ6_9ACTO Length = 886 Score = 309 bits (791), Expect = 2e-82, Method: Composition-based stats. Identities = 91/509 (17%), Positives = 172/509 (33%), Gaps = 89/509 (17%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKE------------------ 42 + L L+ D LR G + Y + + LLFLK + Sbjct: 4 LTLAQLERHLFAAADILR-GTMDASEYKDYIFGLLFLKRANDEFEAARERIKEQAKRDWG 62 Query: 43 ----------------TGQEAEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLV 86 ++ ++PE RW ++ S + + + + + L E + + Sbjct: 63 FDGEELDAFLEQEAPYRERDVLFVPEKARWHEI-SGVTRNINESVLRPALQLLEGQNEKL 121 Query: 87 QAVFHNVSTTIT------------EPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGL 134 +F ++ K++ L+++ + D G YE L Sbjct: 122 TGLFDHLDFNRIGGSGAAAGTATLADKRLELLIAHFGRVRLRTDDFEFP-DLIGAAYEYL 180 Query: 135 LQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTN 194 +++ A+ G+++TPR +++ ++ LL P + DP G+ G LI A YV+ Sbjct: 181 IKEFADSAGRKGGEFYTPRAVVRMMVELLAPTQGMRIYDPCVGSGGMLIHAAEYVEEHGG 240 Query: 195 DLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI-EGNLDHGGAIRLGNTLGSD 253 D D+ F G + G+ ++ MN +LH + +L G + + Sbjct: 241 DTSDMF-----------FAGQDANSGSWIMSTMNMVLHGVRRFDLTTGDTLARPTHI--P 287 Query: 254 GENLPKAHIVATNPPFGSAAG------TNITRTFVHPT--SNKQLCFMQHIIETLHPGGR 305 + + V +NPPF + + L F+QH++ GR Sbjct: 288 TSDADRFDGVLSNPPFSMDYTATDLAHRTERTYYGLTSERGKADLMFLQHMLWETKKEGR 347 Query: 306 AAV---VVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTK--- 359 + V+P VLF GG IR L+D+ + ++ L +FY G+ +L Sbjct: 348 GGMVITVMPHGVLFRGGGEQQIRTKLLDEDAVEAVIGLAPNLFYGTGIPACILVLRPPGC 407 Query: 360 GTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGE 419 ++ V + + + EH + + Sbjct: 408 KGRDRSEREPERAGKVLFINADREFHAERAQNVLLPEHAEKITTTFRTFAE--------- 458 Query: 420 WSFNAEETEVADSEENKNTDQHLATSRWR 448 + V EE D +L R+ Sbjct: 459 ---VPGFSRVVTREELAENDDNLNIRRYV 484 >UniRef50_D1VRI9 PutatIve type i restriction enzyme hindviip m protein n=2 Tax=Firmicutes RepID=D1VRI9_9FIRM Length = 510 Score = 309 bits (791), Expect = 2e-82, Method: Composition-based stats. Identities = 93/536 (17%), Positives = 190/536 (35%), Gaps = 81/536 (15%) Query: 6 LVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK-------------------ET--- 43 ++W L G + Y + L+FL+ + Sbjct: 11 FEKQIWDAACVLW-GHIPAAEYRKVIVGLIFLRYISSAFEKRYEELLKDGDGFENDRDAY 69 Query: 44 -GQEAEYLPEGYRWDDLKSRIGQ-EQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPK 101 + ++PE RW + S E + + +++ L + N ++ + + Sbjct: 70 AEENIFFVPEEARWSKISSAAHTPEIGTVIDDAMRAIEKENTSLKNVLPKNYASPDLDKR 129 Query: 102 QITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIH 161 + +V + +G S+D G YE + + A + G+++TP ++KTI+ Sbjct: 130 VLGEVVDLFTNEVKMDGTEA-SKDLLGRTYEYCIAQFAAYEGTKGGEFYTPSSIVKTIVA 188 Query: 162 LLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGT 221 +LKP V DP G+ G ++++++V++ +++ + + G E T Sbjct: 189 ILKPFNNCRVYDPCCGSGGMFVQSEKFVQAHSDNRG-----------NISVYGQESNADT 237 Query: 222 RRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAG------- 274 ++A MN + I+ N +T +D K+ + NPPF + Sbjct: 238 WKMAKMNMAIRGIDANFGSY----HADTFFNDIHKTLKSDFIMANPPFNLSNWGADKLKD 293 Query: 275 TNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGT-DIRRDLMDKCH 333 + P+ N ++QH+I L P G+ +V+ + L G +IRR +++ Sbjct: 294 DVRWKYGTPPSGNANYAWIQHMIHHLAPNGKIGLVLANGALSSQSSGEGEIRRKIIEDDL 353 Query: 334 LHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSF-GKRTP 392 + I+ LPT +FY+ + + F TK D R K Sbjct: 354 IEGIVALPTQLFYSVTIPVTLWFITKNK--------KQKGKTLFIDARKMGYMVDRKHRD 405 Query: 393 FTD--------EHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLAT 444 FT+ + + + + +G +G + +A E+ D L Sbjct: 406 FTEGIQADGSLGDIDLLAKTFEDFQNGELKEKKG-------FSAIASIEDIAKQDYILTP 458 Query: 445 SRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSEL 500 R+ + ++K + L + E E+ + L + Sbjct: 459 GRYVGIEEQEDDGEP--------FEEKMTRLTSELSGMFEKSHELEEEIRKKLGAI 506 >UniRef50_B5EVZ6 Type I restriction-modification system, M subunit n=1 Tax=Vibrio fischeri MJ11 RepID=B5EVZ6_VIBFM Length = 515 Score = 306 bits (783), Expect = 1e-81, Method: Composition-based stats. Identities = 96/532 (18%), Positives = 190/532 (35%), Gaps = 68/532 (12%) Query: 3 NNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQE---------------- 46 + LW LR G + Y + + LLF+K ++ E Sbjct: 7 DKAFFDTLWDSAVALR-GALQPSEYKHPVLGLLFIKYVSDSFTELQVNLKEWVADANHDY 65 Query: 47 ---------------AEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFH 91 ++PE RWD L Q + V ED+ ++ + + Sbjct: 66 YGMDINDPDLYEAENVFWVPEEARWDFLVGSAKQTNIAKLLDEAVKAIEDNNSQLKGMLY 125 Query: 92 NVSTTITEP-KQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYF 150 + P ++ L+ + L +N +S D G YE L K A + AG ++ Sbjct: 126 RGFGLLKIPSSKLGELIDLLGKLT-FNSKEHRSADVLGQAYEFFLGKFALAEGASAGAFY 184 Query: 151 TPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHR 210 TP ++ TI+ ++ P + + +PA G+ G ++ ++++++ + D+ Sbjct: 185 TPESIVSTIVEVIAPTKGQ-LYEPAIGSGGMVVCSEKFMERNGGERGDI----------- 232 Query: 211 AFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFG 270 + G E T ++A MN + ++ +L A +TL +D +A + NPPF Sbjct: 233 SVYGQEYTHTTWKMAAMNLTIRGLDFDLGKENA----DTLLNDLHKDLRADYIMANPPFN 288 Query: 271 SAAG-------TNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVL-FEGGKGT 322 + SN ++QH++ L+ GRA VV+ + + Sbjct: 289 QEKWGAAKVAGDVRWKWGQPSDSNANYAWIQHMLYHLNETGRAGVVMANGAMTSTANNED 348 Query: 323 DIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRT 382 IR+ +++ + ++ LP +F + + + FF K + D R Sbjct: 349 AIRKAIIEDDLVECMVALPPKLFINTQIPSCIFFFNKNK--------KRKGETLFIDARH 400 Query: 383 NMP-SFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQH 441 + F +EH+ Y + ++ A + E+ + Sbjct: 401 LGRLESRAQLVFDEEHIMEIANTYHAWAKTDFAEKDSKYVDIAGFCKSGKLEDIEKAGFV 460 Query: 442 LATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGEL 493 L+ R+ + E S D++ L + S D ++ E+ Sbjct: 461 LSPGRYVG-AAEVEEDEASYQEDMATLTGQLSEQIKKSVSLDEQIKASLAEV 511 >UniRef50_A8YVB4 Type I restriction-modification system modification subunit n=57 Tax=Firmicutes RepID=A8YVB4_LACH4 Length = 551 Score = 306 bits (783), Expect = 2e-81, Method: Composition-based stats. Identities = 108/582 (18%), Positives = 200/582 (34%), Gaps = 112/582 (19%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKET----------------- 43 + +L + L+ D LR + Y N L ++F K + Sbjct: 7 LTKKELESALFSAADALR-SKMDANEYKNYLLGIIFYKYLSDKMLYHVGEVLEGRRDLSL 65 Query: 44 GQEAEYLPEGYRWDDLKSRIGQE--------------------------------QLQFY 71 + + E + +DL+ I Q+ Sbjct: 66 EENQKIYEEKFDTEDLQDDIKTTFSYTISPEHTFTYILNEINGTARTKDGKIKTFQISDL 125 Query: 72 RKMLVHLGEDDKKLVQAVFHNVSTTITE--------PKQITALVSNMDSLDWYNGAHGKS 123 + + +F +V I ++ + L+ N Sbjct: 126 ADAFNDIESTKDSDFEGLFADVQLYSPRLGTNAQKQADTIANVIKAIGDLELVNQVDN-- 183 Query: 124 RDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPR----EVVQDPAAGTA 179 +D GD YE L+++ A+E+ AG+++TP+ + + + L V DPA G+ Sbjct: 184 KDTLGDAYEYLIKQFASESGKKAGEFYTPQEVSELLTKLTLVDKNYPEEMTVYDPAMGSG 243 Query: 180 GFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLD 239 L++ +Y+K D + + G E+ T LA MN +LH ++ + Sbjct: 244 SLLLKFKKYIKLANGQADKIF-----------YYGQEINMSTYNLARMNMILHGVDSSNQ 292 Query: 240 HGGAIRLGNTLGSDGENLPK--AHIVATNPPFGSAAGTNI----TRTF-----VHPTSNK 288 +R G+TL D + K V NPP+ N F + P S Sbjct: 293 E---LRRGDTLDEDWPPVSKTMFDAVVMNPPYSLKWSANKGFLQDPRFSPYGVLPPKSKA 349 Query: 289 QLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQ 348 F+ H L G A+V+P VLF G IR+ L++ + ++ LP+ +FY+ Sbjct: 350 DYAFLLHGFYHLKNTGTMAIVLPHGVLFRGAAEGKIRKKLLENGSIDAVIGLPSNLFYST 409 Query: 349 GVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGED 408 + T ++ K V D + +E +Q Y + Sbjct: 410 SIPTVIVVLKKDKTDRS---------VMFIDASKGFEKKKNQNELREEDIQKILDTYEKR 460 Query: 409 PHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWL 468 ++ A+ E+ +++ N N +++ T F E K + D L Sbjct: 461 ED------VERYAHLAKFDEIEENDFNLNIPRYVDT-----FVPEPPVDLKKVATD---L 506 Query: 469 KDKDSIDADSLPEPDVLAAEAMGELVQALSELDALMRELGAS 510 + + + E + E + + + LDA+++EL A Sbjct: 507 HETNVEIEKNQRELVGMLKELTSDDTEIMDGLDAIIKELEAE 548 >UniRef50_B7GLJ2 Type I restriction-modification system methyltransferase subunit n=4 Tax=Bacteria RepID=B7GLJ2_ANOFW Length = 515 Score = 305 bits (780), Expect = 3e-81, Method: Composition-based stats. Identities = 97/544 (17%), Positives = 189/544 (34%), Gaps = 85/544 (15%) Query: 5 DLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA----------------- 47 D L++ + +R G V+ +Y + + L+FL+ ++ Sbjct: 8 DFQKDLFEAANKMR-GSVAPADYKHYVLPLIFLRYLSNKYEQRRKELEQIVKDPSSDWYT 66 Query: 48 ---------------------EYLPEGYRWDDLKSRIGQEQL-QFYRKMLVHLGEDDKKL 85 +PE W + Q + + + L E++ +L Sbjct: 67 EDDEMRQIIITDPDQYKAENVFVVPEEASWSYIMKNAKQPNIKEILDNAMKRLEEENPEL 126 Query: 86 VQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSG 145 + + + + L+ D ++ +S D G YE + A + Sbjct: 127 EGILPRIYQGSNLPAENVAGLIEIFSR-DVFSANTHESVDILGRTYEYFISSFAASEGNR 185 Query: 146 AGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQD 205 G++FTP ++K ++ +L+P+ +V DPA G+ G I+++ Y ++ Sbjct: 186 GGEFFTPSSIVKLLVAMLEPKSG-IVFDPACGSGGMFIQSEEYAPNKHA----------- 233 Query: 206 FQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVAT 265 +F G E V T RL MN LLH I + G ++ +D KA + Sbjct: 234 ----LSFYGQENVVTTVRLGKMNVLLHGINAEIRLGDSL------LNDQFPDLKADYIIA 283 Query: 266 NPPFGSAAG-------TNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEG 318 NPPF + SN +MQH + L+ G A V+ + + Sbjct: 284 NPPFNQKDWGADRLSKNDPRLIGPVTNSNANYMWMQHFLYHLNDTGTAGFVMANGAMTTN 343 Query: 319 -GKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWV 377 + ++R+ L+D+ ++ I++LP +F+ G+ + F +K N + +++ Sbjct: 344 VKEEKEVRQKLVDEGYIDCIVQLPEKLFFTTGIPCCLFFLSKNRDG-KNGYRARKNEILF 402 Query: 378 YDLRTNMPSF-GKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENK 436 D R K+ + E + VY + +VA EE + Sbjct: 403 IDARKMGTLVSRKQKALSKEEIDKIAAVYHAYK----YEEAEGYEDVTGFCKVATIEEVQ 458 Query: 437 NTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQA 496 D L + ++K + L E + ++ + Sbjct: 459 ANDYKLTPGIYVGTEVSDEDDTP--------FEEKMAELTQRLLEQFEESNRLQEKIKRD 510 Query: 497 LSEL 500 L L Sbjct: 511 LEGL 514 >UniRef50_Q5LGD1 Putative modification protein of type I restriction-modification system n=1 Tax=Bacteroides fragilis NCTC 9343 RepID=Q5LGD1_BACFN Length = 890 Score = 304 bits (778), Expect = 5e-81, Method: Composition-based stats. Identities = 100/502 (19%), Positives = 193/502 (38%), Gaps = 59/502 (11%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA----EYLPEGYRW 56 + L + LW+ C+ LR G + Y N + ++LFLK + Q LPEG + Sbjct: 3 IKKTQLYSILWESCNILR-GSMDASQYKNYVLTMLFLKYISDKVQSDSDIFFDLPEGCFF 61 Query: 57 DDLKSRIGQEQL-QFYRKMLVHLGEDDKKLVQAV----FHNVSTT---ITEPKQITALVS 108 +D+ + G+ + + +K L + + +L + F + + + +T+L+S Sbjct: 62 NDIVALKGKPNIGEEIQKKLHVIARANPRLDHIINEADFDDSTKLGTGKAKVDTLTSLIS 121 Query: 109 NMD-SLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQP 167 ++ D GD YE L++ A E+ GQ++TP + + + L+ Sbjct: 122 VFQRDFLDFSKNRAGDDDLIGDAYEYLMKNFAAESGKKKGQFYTPAEVSRLMARLIGIHK 181 Query: 168 REV----VQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRR 223 + DP G+ L+ A + + + G EL TR Sbjct: 182 DNRPQISIYDPTCGSGSLLLRAA--------------AEYTKHRDGVSIFGQELDGATRG 227 Query: 224 LALMNCLLHDIE-GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSA---------- 272 +A+MN LH + L+ G I S L + V NPPF Sbjct: 228 MAVMNMYLHGYDDPELEVGDTIEKP-FFKSTPNQLETFNYVVANPPFSQKGWIKGEIKIN 286 Query: 273 -----AGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRD 327 G + + P + F+ HII++++ GR A ++P+ VLF G + +RR Sbjct: 287 DTFGRWGNSDNLPPIPPIGYEDYAFLLHIIKSINSQGRGACILPNGVLFRGNEEEAVRRK 346 Query: 328 LMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSF 387 +++K ++ I+ LPT +F+ G+ ++ K + +++ D R+ Sbjct: 347 IIEKRYIRGIISLPTNLFFGTGIPACIVIIDKAKTSTSKG-------IFMIDARSGFTKD 399 Query: 388 GKRTPFTDEHLQPFERVYGEDPHGL-SPRTEGEWSFNAEETEVADSEENKN--TDQHLAT 444 G + ++ ++ + + + + + E N D +L Sbjct: 400 GAKNRLREQDIRRVFDAWEALENLEANGNLDDKEETIPHYARFVPYTEITNERNDCNLNV 459 Query: 445 SRWRKFSREWIRTAKSDSLDIS 466 SR+ I+ L ++ Sbjct: 460 SRYITPVDTEIQQDLYAHLKLN 481 >UniRef50_A3CUH5 N-6 DNA methylase n=4 Tax=cellular organisms RepID=A3CUH5_METMJ Length = 505 Score = 303 bits (777), Expect = 7e-81, Method: Composition-based stats. Identities = 123/526 (23%), Positives = 215/526 (40%), Gaps = 69/526 (13%) Query: 4 NDLVAKLWKLCDNLRDGGVSYQ-NYVNELASLLFLKMCKET--------------GQEAE 48 +DL +K+ L D GG+S + +++ L+F+K ++ Sbjct: 5 SDLKSKIDTLWDRFWSGGMSNPLQSIEQMSYLIFMKRLEDMDGVEQNRARARGVPYTSVF 64 Query: 49 YLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGED----DKKLVQAVFHNVSTTITEPKQIT 104 E RW K ++ L R + + +K L + I +P + Sbjct: 65 EEHEECRWSSWKHYPAEQMLVHVRDKVFPFIQSLHNGEKTLFAQQMRDAVFMIPKPSLLQ 124 Query: 105 ALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLK 164 V+ +D ++ ++RD GD+YE LL + + GQ+ TPR +I+ I+ L+ Sbjct: 125 EAVALIDEMNI----TAQNRDTQGDIYEYLLSQLSTA--GKNGQFRTPRHIIRMIVELVD 178 Query: 165 PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIH--------------- 209 P + + DPA GTAGFLI + ++ + D L+ D + + Sbjct: 179 PDITDRICDPACGTAGFLINSYEHIIRKYTSPDLLEVDDEGEYHNLIGDNITDQKHWEKL 238 Query: 210 --RAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNP 267 F G + R++LMN +LH I+ I L +TL + +V NP Sbjct: 239 WSDTFYGFDFDSTMTRISLMNLMLHGIKA-----PHIELKDTLSKRYTEEERYTVVLANP 293 Query: 268 PF-GSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGG-KGTDIR 325 PF GS ++I + T+ +L ++ +I+ L GG+ V+VPD VLF ++R Sbjct: 294 PFKGSIDKSDINDSLSLGTTKTELLLVERMIQLLTIGGKCGVIVPDGVLFGSSRAHKELR 353 Query: 326 RDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNM 384 R L+++ L I+ +P+GIF GV T VL F KG T VW YD+ + Sbjct: 354 RMLLEENQLEGIVSMPSGIFKPYAGVSTAVLIFVKGGK---------TGKVWFYDMEADG 404 Query: 385 PSFGKRTPFTD--EHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHL 442 S + F D + + E + + EE + + L Sbjct: 405 YSLDDKRTFIDGKGDIPDIIERFRERRDT-------NPTDRKAKCFYVPVEEIQANNYDL 457 Query: 443 ATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAE 488 + SR+++ E + + + I ++ +S +L E + + Sbjct: 458 SISRYKEIEYEEVEYEPPEVI-IDKIQALESQIQQNLEELKEMLKK 502 >UniRef50_Q0AUQ5 Type I restriction-modification system, M subunit n=7 Tax=Bacteria RepID=Q0AUQ5_SYNWW Length = 891 Score = 302 bits (773), Expect = 2e-80, Method: Composition-based stats. Identities = 96/513 (18%), Positives = 173/513 (33%), Gaps = 91/513 (17%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQ--------------- 45 + + L L K D LR G + + + +LF+K + Sbjct: 6 ITLSQLEHFLLKAADILR-GKMDASEFKEFIFGMLFIKRLSDEFDLKRQKLIKKDFAHLK 64 Query: 46 -----------------EAEYLPEGYRW-DDLKSRIGQ----------EQLQFYRKMLVH 77 E ++P RW + G + K + Sbjct: 65 DQPDLIHELLEDKTSYGETFFVPVRARWHESWVDENGDTVPALKDLKYDIGNMLNKAIAA 124 Query: 78 LGEDDKKLVQAVFHNVSTTITEPKQI------TALVSNMDSLDWYNGAHGKS-RDDFGDM 130 + E++ L + +N+ + K L+ + + + D G Sbjct: 125 IEEENDALAGVLKNNIDFNAVKGKTKIPDQKWKDLIDHFNQPQFVLVNDNFEFPDLLGAA 184 Query: 131 YEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVK 190 YE L++ A+ G+++TP +++ ++ L KP+ + DP G+ GFLI++ +YV+ Sbjct: 185 YEYLIKYFADSAGKKGGEFYTPAEVVRLLVQLTKPEAGNTIYDPTVGSGGFLIQSYQYVE 244 Query: 191 SQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE-GNLDHGGAIRLGNT 249 Q D +DL A G + + MN +LH+I +++G + Sbjct: 245 EQGQDPNDL-----------ALFGQDSNGTVWSICNMNMILHNITRFTIENGDTLEDPLI 293 Query: 250 LGSDGENLPKAHIVATNPPF-------GSAAGTNITRTFVHPTSNKQLCFMQHIIETLHP 302 L D + V NPPF L F+QH++ +L P Sbjct: 294 L--DKGKIRTFERVLANPPFSQNYSRANMKFSNRFWEWCPETGKKADLMFVQHMLASLKP 351 Query: 303 GGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTV 362 G A ++P VLF GGK IR L++ + I+ LP G+FY G+ +L K Sbjct: 352 DGHMATIMPHGVLFRGGKEKLIREILINDDVIEAIISLPPGLFYGTGIPACILVCNKSKP 411 Query: 363 ANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSF 422 + + V + + E ++ Sbjct: 412 DSLK------NKVLFINADREYAEGKAQNKLRPEDIEKI------------DFVFTNKLE 453 Query: 423 NAEETEVADSEENKN-TDQHLATSRWRKFSREW 454 + + + EE D +L R+ + E Sbjct: 454 IPKYSRLVTKEEIVEPHDYNLNIRRYVDNTPEP 486 >UniRef50_Q1MKB0 Putative type I restriction enzyme modification methylase subunit n=1 Tax=Rhizobium leguminosarum bv. viciae 3841 RepID=Q1MKB0_RHIL3 Length = 411 Score = 302 bits (772), Expect = 3e-80, Method: Composition-based stats. Identities = 193/402 (48%), Positives = 244/402 (60%), Gaps = 42/402 (10%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLK 60 MN N +V KLW+LC LR G++YQ YV EL LLFLKM E +E LP RW DL Sbjct: 1 MNANAIVQKLWRLCTVLRKDGITYQQYVTELTYLLFLKMMAERNRETGSLPRSMRWADLV 60 Query: 61 SRIGQEQLQFYRKMLVHLG-------------------------------EDDKKLVQAV 89 G +L+ YRK LV LG ++VQ + Sbjct: 61 QANGLAKLELYRKTLVTLGTVSTRLGKDDALVLPPGENATPDERKRYADARPLPEMVQEI 120 Query: 90 FHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQY 149 F N ST I EP+ +T LV+ +D LDW++ RD FGD+YEGLLQKNA ETK GAGQY Sbjct: 121 FDNASTFIREPQNLTTLVTAIDELDWFSE----DRDQFGDLYEGLLQKNAEETKRGAGQY 176 Query: 150 FTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIH 209 FTPR LI+ ++ L++P+P EV+QDPAAGT GFLI ADRY+++ T++ DL Q+FQ Sbjct: 177 FTPRVLIELLVRLMQPKPGEVIQDPAAGTGGFLIAADRYMRAVTDNYFDLGRKQQEFQKR 236 Query: 210 RAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPF 269 AF G+E VPGT RL LMN LH+I+ + LG+TL G+ L +A+++ TNPPF Sbjct: 237 HAFHGMENVPGTLRLLLMNLYLHNIDS-----DHVDLGDTLSDKGKGLGRANLILTNPPF 291 Query: 270 GSAAGTNITRTFVHPT--SNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRD 327 G A G S+ QL F++H I L PGGRAA+VVPDNVLFE G+G +R+ Sbjct: 292 GPAGGAPTRDDLSVTATVSSYQLPFVEHCIRALQPGGRAAIVVPDNVLFEDGRGRQLRQM 351 Query: 328 LMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDK 369 +MD C +HTILRLPTGIFYAQGVKTNV+F T+ Q Sbjct: 352 MMDWCDVHTILRLPTGIFYAQGVKTNVIFLTRAKTETGTQRP 393 >UniRef50_C1ZKX4 Type I restriction-modification system methyltransferase subunit n=2 Tax=Bacteria RepID=C1ZKX4_PLALI Length = 571 Score = 301 bits (770), Expect = 5e-80, Method: Composition-based stats. Identities = 93/551 (16%), Positives = 193/551 (35%), Gaps = 78/551 (14%) Query: 3 NNDLVAKLWKLCDNLR-DGGVSYQNYVNELASLLFLKMCKETGQEAE------------- 48 + ++ +LW D LR + + Y + L+FL+ +AE Sbjct: 43 HTEIERRLWASADELRANSKLKSSEYSVPVLGLIFLRYADHRFTQAERELNVLFAKKSGS 102 Query: 49 ---------------YLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNV 93 +LP R+ L E + + E + + ++ + Sbjct: 103 RRAIGKEDFQAKGVMFLPPESRFSALLELPEGEDIGKAITTAMKAIEKENEELKGILPKT 162 Query: 94 STTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153 + I E + +L+ N+ S+ D FG +YE L A G++FTP Sbjct: 163 YSKI-ENTTLVSLLKNLSSI-----PVDAEGDTFGKIYEYFLGNFARAEGQKGGEFFTPT 216 Query: 154 PLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFI 213 L+K I+ +++P + DPA G+ G +++ ++K+ N+ + + Sbjct: 217 SLVKLIVEIIQPYHG-RIYDPACGSGGMFVQSADFIKAHHNNPA----------VEISIY 265 Query: 214 GLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAA 273 G E V TR+L MN +H + G++ G E++ K V NPPF Sbjct: 266 GQERVDETRQLCQMNLAVHGLSGDIRQGNT-----YYEDPHESVGKFDFVMANPPFNVDK 320 Query: 274 -------GTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRR 326 + N +++ +L+ GRA V+ ++ +IR+ Sbjct: 321 VDKEKLKEDPRFPLGMPRADNANYLWIELFYSSLNATGRAGFVMANSAADARQSEMEIRQ 380 Query: 327 DLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPS 386 L+ + ++ + FY + + F KG + + V D R Sbjct: 381 KLLKAHVVDVMIAIGPNFFYTVTLPCTLWFLDKGKSNLSGKGSQRKEQVLFIDARHIFRQ 440 Query: 387 FGK-RTPFTD---EHLQPFERVYGE----------------DPHGLSPRTEGEWSFNAEE 426 + F+ E++ R+Y +P + + +++ A Sbjct: 441 VDRAHRKFSPKQLEYIANIVRLYRGEQPEFTAGDDLEFPGVEPDLKATFPKLKYADVAGL 500 Query: 427 TEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLA 486 ++A +E + L R+ + + ++ + +++++ + +A Sbjct: 501 CKIATLQEIEAQGWSLNPGRYVGVADKAPDDFVFAERLEELSEELEVLNSEARELEERIA 560 Query: 487 AEAMGELVQAL 497 + L AL Sbjct: 561 VNVVKLLEAAL 571 >UniRef50_C2C3E3 Site-specific DNA-methyltransferase, adenine-specific n=12 Tax=Bacilli RepID=C2C3E3_LISGR Length = 531 Score = 300 bits (769), Expect = 6e-80, Method: Composition-based stats. Identities = 104/579 (17%), Positives = 194/579 (33%), Gaps = 111/579 (19%) Query: 3 NNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA-EYLPEGYRWDDLKS 61 +N+ K+W + + R G + Y + + +LF K E + E + G W+ + S Sbjct: 4 SNEQQNKMWAMLNQTR-GQIGLTAYKDYIFGILFYKYLSEKATQWLESVLRGESWESIYS 62 Query: 62 RIGQEQLQFYRKML-----------------------------------VHLGEDDKKLV 86 + L + +K L + + K Sbjct: 63 QDPARSLDYMKKNLGYAIRPNNFFSDWKKAIEEDQFNIGLMTDTFGHFNQQIAFEAKSDF 122 Query: 87 QAVFHNVSTTITE-----PKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANE 141 + +F + + + + ++S ++ L D D+YE L+ K A Sbjct: 123 EGIFDGMRFDSADLGANAQARASVMISMIEVLSAPEFDLSGGDDAISDIYEYLVAKFATV 182 Query: 142 TKSGAGQYFTPRPLIKTIIHLLKPQPRE----VVQDPAAGTAGFLIEADRYVKSQTNDLD 197 S GQY+TP+ + + +L E + DP G+ L+ Y+K+ Sbjct: 183 LASDMGQYYTPKEISDVMAQILTFGREEAEHFSIYDPTVGSGSLLLTTASYMKNSHKRGM 242 Query: 198 DLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN---LDHGGAIR--LGNTLGS 252 + G E RL+ MN ++H +E N ++H ++ + + Sbjct: 243 ------------IKYFGQEKDATPYRLSRMNLMMHGVEYNDVSINHADTLKSDWPDGVVE 290 Query: 253 DGENLPKAHIVATNPPFGSAAGTN-------ITRTFVHPTSNKQLCFMQHIIETLHPGGR 305 +N V NPP+ + V P + F+ H + L GR Sbjct: 291 GKDNPRMFDAVMANPPYSAHWNNKDREDDPRWREYGVAPKTKADYAFLLHCLYHLEDNGR 350 Query: 306 AAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANP 365 A+++P VLF G IR+ L+DK + ++ P +F + VL K V + Sbjct: 351 MAIILPHGVLFRGAAEGRIRKALIDKHQIEAVIGFPDKLFLNTSIPVCVLILRKNRVES- 409 Query: 366 NQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAE 425 DV D + + E + + Sbjct: 410 --------DVLFIDASKDFEKMKNQKRLRPEDVAKIVDTVVHRKEME------------K 449 Query: 426 ETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVL 485 +A +E K D +L R+ + ++++ ID + E Sbjct: 450 YAHIATLDEIKENDYNLNIPRY-----------------VDTFEEEEPID---IVEVSQE 489 Query: 486 AAEAMGELVQALSELDALMRELGASDEADLQRQLLEEAF 524 + GE+ QA SE +++ EL + E + + F Sbjct: 490 ITKINGEIKQAESEFLSMLDELAVTPETKDLIEAAKGVF 528 >UniRef50_B1VHI4 Type I restriction-modification system, methyltransferase subunit n=4 Tax=Bacteria RepID=B1VHI4_CORU7 Length = 865 Score = 300 bits (769), Expect = 7e-80, Method: Composition-based stats. Identities = 88/510 (17%), Positives = 175/510 (34%), Gaps = 92/510 (18%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKE--------TGQEAEYLPE 52 MN +L +++W+ +N+R + Y + + +F K + E E LP+ Sbjct: 1 MNKQELASRIWESANNMR-SKIEANEYKDYILGFIFYKFLSDQVEQFMLDNDAEPEDLPD 59 Query: 53 -----------------------GYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAV 89 + + + + R+ L + + V Sbjct: 60 ALVETDTDTVALVRNNLGYFLTYENLYSTWRDKGNDFSIAHVREGLATFKRNIAPERKHV 119 Query: 90 FHNVSTTIT---------EPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNAN 140 F + T+ + + A+ +D +D + D G +YE L++K A Sbjct: 120 FDGILNTLDTSLSKLGTTDAARTAAIKKLLDLIDDIPTDGKQGYDVLGYIYEYLIEKFAA 179 Query: 141 ETKSGAGQYFTPRPLIKTIIHLLKPQPREV----VQDPAAGTAGFLIEADRYVKSQTNDL 196 AG+++TP + + +++ + + DP +G+ L+ + V + D Sbjct: 180 NAGKKAGEFYTPHEVSLVMSNIVADHLKGRDEIQIYDPTSGSGSLLLNIGQAVAKRMGDP 239 Query: 197 DDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLD---HGGAIRLGNTLGSD 253 D + + EL T L MN ++ ++ + +G ++ + + Sbjct: 240 DRIK-----------YFAQELRENTYNLTRMNLVMRGVKADNIVARNGDSLAHDWPMFDE 288 Query: 254 GENLPKA-----HIVATNPPFGSAA-------GTNITRTFVHPTSNKQLCFMQHIIETLH 301 + + V +NPP+ R + P + F+ H + + Sbjct: 289 SDPVQTYQPLYVDAVVSNPPYSQKWEPEGNGADPRFARFALAPKTKADYAFLLHELFHVK 348 Query: 302 PGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGT 361 P G +V+P VLF GG DIRR+L++ H+ ++ LP+ IFY G+ T ++ Sbjct: 349 PDGILTIVLPHGVLFRGGSEADIRRNLIEANHIDAVIGLPSNIFYGTGIATIIMVLK--- 405 Query: 362 VANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWS 421 + DDV D GK +Q Sbjct: 406 ------QERDRDDVLFIDASQGFIKQGKYNHLRARDIQRIVDAVHNRVDVPH-------- 451 Query: 422 FNAEETEVADSEENKNTDQHLATSRWRKFS 451 +V +E + D +L R+ + Sbjct: 452 ----FAKVVTRDEIRANDHNLNIPRYVSAT 477 >UniRef50_B1IB55 Type I restriction modification enzyme methylase subunit n=56 Tax=Bacteria RepID=B1IB55_STRPI Length = 497 Score = 300 bits (769), Expect = 7e-80, Method: Composition-based stats. Identities = 130/520 (25%), Positives = 216/520 (41%), Gaps = 56/520 (10%) Query: 1 MNNNDLVAKLWKLCDNLR-DGGVSYQNYVNELASLLFLKMCKETGQEAEYLPE------- 52 M +L K+ +L + L +G + + +L LLF+K E E Sbjct: 1 MITGELKNKIDQLWEILWTEGNANPLTNIEQLTYLLFMKDLDSVELGRESDAEFLGIPYE 60 Query: 53 --------GYRWDDLKSRIG-QEQLQFYRKMLVHLGEDDKKL-----VQAVFHNVSTTIT 98 YRW K+ QE + + + ++ K I Sbjct: 61 GVFPKDKPEYRWSTFKNIGDAQEVYRLMTQEIFPFIKNLKGDTDDTAFSRYMREAIFQIN 120 Query: 99 EPKQITALVSNMD-----SLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153 +P + +S +D LD +S D GD+YE LL K + GQ+ TPR Sbjct: 121 KPATLQKAISILDVFPTRGLDVDFDNDKQSITDIGDIYEYLLSKLSTA--GKNGQFRTPR 178 Query: 154 PLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFI 213 +I ++ L++P ++++ DPA G+AGFL+ A RY+K + D + + D + ++ F Sbjct: 179 HIIDMMVELMQPTIKDIISDPAMGSAGFLVSASRYLKRK-KDEWETNTDNINHFHNQMFH 237 Query: 214 GLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAA 273 G + RL MN +LH +E I ++L D E K +V NPPF + Sbjct: 238 GNDTDTTMLRLGAMNMMLHGVE-----NPQISYLDSLSQDNEEADKYTLVLANPPFKGSL 292 Query: 274 GTNITRTFV---HPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGK-GTDIRRDLM 329 N T + T +L F+ + TL PGGRAAV+VPD VLF K IR++++ Sbjct: 293 DYNSTSNDLLATVKTKKTELLFLSLFLRTLKPGGRAAVIVPDGVLFGSSKAHKGIRQEIV 352 Query: 330 DKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSF- 387 + L ++ +P+G+F GV T +L FTK TD VW YD++ + S Sbjct: 353 ENHKLDAVISMPSGVFKPYAGVSTAILIFTKTGNG-------GTDKVWFYDMKADGLSLD 405 Query: 388 GKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRW 447 KR P +D + + + +++ E K D L+ +++ Sbjct: 406 DKRQPISDNDIPDIIERFHHLEKEAERQ-------RTDQSFFVPVAEIKENDYDLSINKY 458 Query: 448 RKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAA 487 ++ E + + + + D + L E + L Sbjct: 459 KEIEYEKVEYE-PTEVILKKINDLEKEIQAGLAELEKLLK 497 >UniRef50_C7TL46 Type I restriction-modification system, M subunit n=17 Tax=Bacteria RepID=C7TL46_LACRL Length = 549 Score = 300 bits (767), Expect = 1e-79, Method: Composition-based stats. Identities = 106/578 (18%), Positives = 202/578 (34%), Gaps = 117/578 (20%) Query: 4 NDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA---------------- 47 ++ ++LW + + LR G + + N + +F + E + Sbjct: 8 QEITSQLWAMANELR-GNMDASEFRNYILGFMFYRYLSEHQERYLQETNLFEPEAGQTWN 66 Query: 48 -------------------------EYLPEGYRWDDLKSRIGQEQL--QFYRKMLVHLGE 80 + W L ++ +++ Y+ + + Sbjct: 67 DAFREVASDPESRKEYLEDISSELGYAIAPEQTWASLVQKVNDDKIVPSDYQDLFDDFNK 126 Query: 81 DD------KKLVQAVFHNVST--------TITEPKQITALVSNMDSLDWYNGAHGKSRDD 126 + + + +F +++ T K + +V +D ++ + RD Sbjct: 127 NAALNPNSEADFRGIFADINLGDSRLGSSTTARAKALNGVVRLVDQFEY---NDKQGRDI 183 Query: 127 FGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL-----KPQPREVVQDPAAGTAGF 181 GD+YE L+ + A + AG+++TP + K + L+ K Q V DP G+ Sbjct: 184 LGDVYEYLIAQFAGNSGKKAGEFYTPHQVSKVLAKLVALGVQKDQEIFTVYDPTMGSGSL 243 Query: 182 LIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHG 241 L+ + F G EL T LA MN ++H++ Sbjct: 244 LLTVRDEL--------------PATVKAVMFHGQELNTTTFNLARMNLMMHNVP---YTN 286 Query: 242 GAIRLGNTLGSDG--------ENLPKAHIVATNPPFGSAAG-------TNITRTF--VHP 284 ++R +TL D ++ V NPP+ + F + P Sbjct: 287 MSLRNADTLEDDWPDGVVGGVDSPRSFDAVVANPPYSIHWDNSENKLKDPRFKPFGALAP 346 Query: 285 TSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGI 344 S F++H + L+ G A+V+P VLF G IR+ +++K +L ++ +P G+ Sbjct: 347 KSKADFAFVEHGLYHLNDTGTMAIVLPHGVLFRGAAEGKIRKAIIEKNYLDAVIGMPAGL 406 Query: 345 FYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERV 404 F++ G+ T VL F K D++ D N + D + Sbjct: 407 FFSTGIPTVVLVFKKNRT---------NRDIFFIDASNNFEKGKNQNILRDSDIDKIIEA 457 Query: 405 YGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLD 464 Y + +++ AE E+ ++E N N +++ T+ K A D Sbjct: 458 YSKRED------VDKYAHKAELDEIVENEYNLNIPRYVDTTEPEKPIDVVQVVADIKETD 511 Query: 465 ISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDA 502 + S A + + EA +L AL EL Sbjct: 512 -KKIAKLSSELAKDIDDLVANNDEAAKQL-AALKELFK 547 >UniRef50_Q3ZWI3 Putative type I restriction-modification system methylation subunit n=1 Tax=Dehalococcoides sp. CBDB1 RepID=Q3ZWI3_DEHSC Length = 645 Score = 298 bits (764), Expect = 2e-79, Method: Composition-based stats. Identities = 95/562 (16%), Positives = 197/562 (35%), Gaps = 77/562 (13%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA------------- 47 + +L A L K + LR G V + + + +LLF K + E Sbjct: 13 LTQAELDAFLEKAANILR-GNVDHSEFRGYVFALLFFKRISDVYIEEVRKLTAQLGDETL 71 Query: 48 --------EYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFH-NVSTTIT 98 +P+G WD + + + ++ + ++ + V Sbjct: 72 AKDPKMHNFVVPDGSLWDIAARQSRNQVGTTLNEAMIAIERANQPKFDGILTSGVDFNDA 131 Query: 99 EPKQITALVSNMDSLD-WYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIK 157 E L++ ++ + D G+ YE L++ A+ +G+++TP+ + Sbjct: 132 EKLPRDKLINLINHFSSQIFDRAHVTDDVLGNAYEYLIRNFASRAGKSSGEFYTPKEVAY 191 Query: 158 TIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLEL 217 + +++PQP + + D A+G+ G L++ YV Q D D L E Sbjct: 192 LMSEIVEPQPGQSICDWASGSGGLLLQCRNYVTRQCKDPDRLL-----------LYAQES 240 Query: 218 VPGTRRLALMNCLLHDIEG-NLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAG-- 274 T ++ +N +LH ++ H ++R + DG+ L K + NPPF Sbjct: 241 NLSTYNISRINMILHGVKSWEHRHQDSLRNPLHV-DDGKKLLKFDRIVMNPPFSLEDWGY 299 Query: 275 --------TNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTD--- 323 + P +N +++H++++L G+A VV+ VLF G Sbjct: 300 DDFQGGDPFGRFGYGMPPRNNGDYAWLEHVLKSLKDTGKAIVVMSQGVLFRGQPEQTEED 359 Query: 324 ------------IRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNC 371 IR + + ++ LP+ +FY V ++ K Sbjct: 360 DGRNQSADAEYVIREGFIKADAIECVIVLPSKLFYGNTVPGCLIIMNKNKPPERK----- 414 Query: 372 TDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVAD 431 + + + N + + L + R + E ++ Sbjct: 415 -NKILMIWASRNFQNANPQNILRPSDLMRILVPWRAFGDLDLARRL----VSIHEEKLVQ 469 Query: 432 SEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMG 491 EE + + E + T +L++S L+ + + + + + Sbjct: 470 EEELERQRRLKDIEDAYAPILEPLET---LTLELSRLETSNWQSNGYSRKSEQVIR--IR 524 Query: 492 ELVQALSELDALMRELGASDEA 513 EL +++ EL + E A+++ Sbjct: 525 ELKRSVKELGKIQGERNAAEDE 546 >UniRef50_Q73QS4 Type I restriction-modification system, M subunit n=1 Tax=Treponema denticola RepID=Q73QS4_TREDE Length = 871 Score = 298 bits (763), Expect = 4e-79, Method: Composition-based stats. Identities = 108/561 (19%), Positives = 205/561 (36%), Gaps = 71/561 (12%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEY----LPEGYRW 56 + ++L LW CD+LR GG+ Y + + +LLF+K + ++ Y +PEG + Sbjct: 3 VRKSELYGSLWASCDSLR-GGMDSSQYKDYILTLLFVKYVSDKYKDMPYGEIEIPEGGSF 61 Query: 57 DDLKSRIGQEQL-QFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPK--------QITALV 107 DD+ + G++ + + K++ L E + ++ + N ++T L+ Sbjct: 62 DDMLALRGKKGIGEGIDKVIAKLAEAND--LRGIIDNAYFNDPTKFGSGQEMVDKLTELL 119 Query: 108 SNM-DSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQ 166 S D + + + D GD YE L++ A E+ GQ++TP + + + H++ + Sbjct: 120 SIFCDKMPNFGKNRAEGDDIIGDAYEYLMKNFATESGKSKGQFYTPAEVSRILAHVIGIE 179 Query: 167 P----REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTR 222 + DPA G+ LI A + A G E T Sbjct: 180 KAKSGESTLYDPACGSGSLLIRAAE-----------------TAPPNVAVFGQEKDITTA 222 Query: 223 RLALMNCLLHDI-EGNLDHGGAIRLGNTL-GSDGENLPKAHIVATNPPFGSAAGTNITRT 280 LA MN +LH++ + G D L + NPPF T+ + Sbjct: 223 GLAKMNLVLHNVATAEIKSGNTFSEPKYKKHDDETALRQFDFAVVNPPFSDKNWTHGLQD 282 Query: 281 FV--------HPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKC 332 F P N ++ H+I++L G+AAV++P VLF G IR+ L+ K Sbjct: 283 FGRFDGYEERPPEKNGDFAWLLHVIKSLKRNGKAAVILPHGVLFRGNAEASIRKALIKKG 342 Query: 333 HLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTP 392 + I+ LP +FY G+ ++ K +++ D + + Sbjct: 343 FIKGIIGLPPNLFYGTGIPACIIVIDKENAEKRKG-------IFIIDASKDFIKDNDKNR 395 Query: 393 FTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRK--- 449 + + +V+ + +E + D +L R+ + Sbjct: 396 LRERDIYKITKVFNNKKELPY------------YSRFVFIDEIEQNDYNLNIPRYIQNGT 443 Query: 450 -FSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALMRELG 508 + I + +++ + L + +E D+L + Sbjct: 444 SEEVQNIEAHLRGGIPSEDIENLSAYWDTFPKLKSSLFKPLRHDFCSLAAEKDSLYGVIE 503 Query: 509 ASDEADLQRQLLEEAFGGVKE 529 + ++E AF K Sbjct: 504 DDKDFSNYADIIETAFEKWKR 524 >UniRef50_C3PKU9 Type I restriction enzyme M protein n=8 Tax=Bacteria RepID=C3PKU9_CORA7 Length = 590 Score = 297 bits (760), Expect = 6e-79, Method: Composition-based stats. Identities = 123/544 (22%), Positives = 218/544 (40%), Gaps = 78/544 (14%) Query: 1 MNNNDLVAKLWKLCDNLRDGGV-SYQNYVNELASLLFLKMCKETGQEAEYL--------- 50 M L + ++ D GG+ + + + + LLF+K E + + Sbjct: 67 MITGALKNNVDRIWDTFWSGGISNPVSVIEQFTYLLFIKDLDERQVQIDKRRALGDPTAT 126 Query: 51 -------PEGYRWDDLKSRIGQEQLQF--YRKMLVHLGEDDKKLVQAVFHNVSTTITEPK 101 + RW +L + + K+ + E Q N S I Sbjct: 127 EDIFDASQQDLRWRNLIEDRDIARRKATIINKVFPFIKEMGGTGFQEHMANASFEIESEA 186 Query: 102 QITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIH 161 ++ ++ +D L + N +D GD+YE +L K + GQ+ T +I+ ++ Sbjct: 187 TLSRVMELIDQLHFSN------KDMKGDLYEYMLDKLSTS--GTNGQFRTTSHIIELLVA 238 Query: 162 LLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGT 221 L++P P++ + DPA GTAGFL+ A+ ++ + + D + DT+ + G + Sbjct: 239 LMEPTPQQRIIDPACGTAGFLVAANDWI-AHHHRADLFNKDTRTTFTNEGLTGFDFDKTM 297 Query: 222 RRLALMNCLLHDI-EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGT---NI 277 R+A MN +H E N+ + +++ T + +V NPPF + + Sbjct: 298 VRIAAMNMFMHGFEEPNISYRDSLQQLPTTFDEA-----FDLVLANPPFAGSLDKDAVDP 352 Query: 278 TRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGK-GTDIRRDLMDKCHLHT 336 V ++ F+ ++ L PGGRAAV+VP+ VLF K +R+ L++ L Sbjct: 353 KLKSVTTAKKTEILFVHRFLQLLKPGGRAAVIVPEGVLFGSTKAHKALRKTLVEDQRLDA 412 Query: 337 ILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSF-GKRTPFT 394 +++LP+G+F GV T VL FT+ D TD+VW YD+ + S KRTP Sbjct: 413 VIKLPSGVFKPYSGVSTAVLCFTRT-------DSGGTDEVWFYDVTADGYSLDDKRTPLL 465 Query: 395 D---------EHLQPFER-VYGEDP--------------------HGLSPRTEGEWSFNA 424 D H+Q +DP S T+ Sbjct: 466 DAPLLGPSPASHIQDLSDPALADDPTPVTLTDEQLKLNNLPDVVARWHSRTTDERERART 525 Query: 425 EETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDV 484 + + EE D L+ +R+++ E T + I+ +++ D L Sbjct: 526 DYSFTVPKEEIAQADYDLSMNRYKEIVLEVEETRDPMDI-IAEIEELDRDITQGLANLKT 584 Query: 485 LAAE 488 + +E Sbjct: 585 MLSE 588 >UniRef50_Q5M500 Type I restriction-modification system methyltransferase subunit n=23 Tax=Firmicutes RepID=Q5M500_STRT2 Length = 534 Score = 297 bits (760), Expect = 7e-79, Method: Composition-based stats. Identities = 103/570 (18%), Positives = 184/570 (32%), Gaps = 104/570 (18%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKET---------GQEAEYLPE 52 + L LW D LR + +Y + L ++F K + +E E L E Sbjct: 7 TSQSLYQALWNSADVLR-SKMDANDYKSYLLGMVFYKYLSDKMLFFVAETMEEETESLDE 65 Query: 53 G---YRWDDLKSRIGQEQLQFYRKMLVHLG------------------------------ 79 YR ++ L + + Sbjct: 66 ALAVYRKYYEDEETHEDLLAVITDEMSYAIHPDLTFTALVERVNDGSFQLEDLAQGFRDI 125 Query: 80 EDDKKLVQAVFHNVSTTITE----PKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLL 135 E +L + +F ++ + P++ V+ + G + D GD YE L+ Sbjct: 126 EQSDELYENLFEDIDLYSKKLGATPQKQNQTVAAVMKELAVLDVAGHAGDMLGDAYEYLI 185 Query: 136 QKNANETKSGAGQYFTPRPLIKTIIHLL----KPQPREVVQDPAAGTAGFLIEADRYVKS 191 + A ++ AG+++TP+P+ K + + + + + D G+ L+ A RY Sbjct: 186 GQFATDSGKKAGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRY--- 242 Query: 192 QTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLG 251 + G EL T LA MN +LH + + +TL Sbjct: 243 ------------SRQPQTVVYFGQELNTSTYNLARMNMILHGVP---IENQFLHNADTLD 287 Query: 252 SDG--ENLPKAHIVATNPPFGSAA-------GTNITRTF--VHPTSNKQLCFMQHIIETL 300 D + V NPP+ + F + P S F+ H L Sbjct: 288 EDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHL 347 Query: 301 H-PGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTK 359 G A+V+P VLF G IR+ L+++ + T++ LP IF+ + T V+ K Sbjct: 348 KQDNGVMAIVLPHGVLFRGNAEGTIRKALLEEGAIDTVIGLPANIFFNTSIPTTVIILKK 407 Query: 360 GTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGE 419 DV+ D + TD H++ Y Sbjct: 408 NRT---------NRDVYFIDASKEFDKGKNQNIMTDAHIEKILNAYKSRED--------- 449 Query: 420 WSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSL 479 + +A EE D +L R+ E + + ++ + ++ Sbjct: 450 ---IDKFAHLASFEEIVENDYNLNIPRYVDTFEE--EEVEPLTEIVAKINQTNATIESQT 504 Query: 480 PEPDVLAAEAMGELVQALSELDALMRELGA 509 + + G +A EL A ++ Sbjct: 505 ASLLDMLGQLHGTTPEADEELKAFVKAFKG 534 >UniRef50_C0QQY6 Type I restriction enzyme M protein (HsdM) n=1 Tax=Persephonella marina EX-H1 RepID=C0QQY6_PERMH Length = 898 Score = 297 bits (759), Expect = 9e-79, Method: Composition-based stats. Identities = 97/560 (17%), Positives = 196/560 (35%), Gaps = 75/560 (13%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQ------EAEYLPEGY 54 + L LW+ + LR GG+ Y + + ++LF+K + + + +PEG Sbjct: 3 IKKTQLYNHLWEAANALR-GGMDASQYKDYVLTILFVKYVTDKYKGDPYNEDGFIVPEGG 61 Query: 55 RWDDLKSRIGQEQL-QFYRKMLVHLGEDD------KKLVQAVFHNVSTTITEPKQITALV 107 +DDL G++ + + +L L E++ + + T + ++T L+ Sbjct: 62 SFDDLIEAKGKKNIGERINIVLSKLAEENGLKGVIDIVDFDDDTKLGTGKEKVDRLTKLI 121 Query: 108 SNMDSLDW-YNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQ 166 ++ + ++ D GD+YE ++K A E GQ++TP + + + ++ + Sbjct: 122 GIFENPELNFSRNRSDGDDILGDVYEYFMKKFATEAGKSKGQFYTPAEVSRVMAKIIGVE 181 Query: 167 ----PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTR 222 P + DP G+ L++ + + + G E+ Sbjct: 182 KATSPDQTAYDPTCGSGSLLLKVAD-----------------EAPVKISLYGQEIDINVA 224 Query: 223 RLALMNCLLHD-IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTN----- 276 +A MN +LH + + G + DG +L NPPF + Sbjct: 225 NIARMNMILHGRPDAEIAQGNTLSHPKFKNPDG-SLKTFDFAVANPPFSQKNWMDGVNVK 283 Query: 277 -----ITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDK 331 V P N F+ H I++L G+ A+++P VLF G +IR++L+ K Sbjct: 284 NDQYHRFDDGVPPAKNGDYAFLLHFIKSLKSKGKGAIILPHGVLFRGNAEAEIRKNLIKK 343 Query: 332 CHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRT 391 ++ I+ LP +FY G+ +L K +++ D G + Sbjct: 344 GYIKGIIGLPPNLFYGTGIPAVILVIDKKNA-------QARKGIFIIDASKGYRKDGNKN 396 Query: 392 PFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFS 451 + + + + + EE + D +L R+ + + Sbjct: 397 RLRERDIHKIVDTFVNFKE------------IPGYSRMVSLEEIEKNDYNLNIPRYIEST 444 Query: 452 REWIRTAKSDSL-------DISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALM 504 + L DI ++ + + E L + L ++ Sbjct: 445 EKEDIQDIYAHLHGGIPKRDIDKIEILNVFNDLKNR-LFRKKEEGYYTLNVDIDNLTEII 503 Query: 505 RELGASDEADLQRQLLEEAF 524 E + E + Sbjct: 504 ENAEEVKEFKSHALAVFEKW 523 >UniRef50_B7RYA8 N-6 DNA Methylase family protein n=2 Tax=Bacteria RepID=B7RYA8_9GAMM Length = 521 Score = 297 bits (759), Expect = 9e-79, Method: Composition-based stats. Identities = 119/539 (22%), Positives = 204/539 (37%), Gaps = 71/539 (13%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQ-NYVNELASLLFLKMCKETGQEAEYLPE------- 52 M +L K+ KL GGV+ + ++ L++ ++ E E Sbjct: 1 MITGELKGKIDKLWVEFWTGGVTNPLTVIEQITFLMYARLLDMNETSDEKRAERSGKTFN 60 Query: 53 --------GYRWDDLKS-RIGQEQLQFYRKMLVHLGEDDKK---LVQAVFHNVSTTITEP 100 RW + + E L+ R L + L + I +P Sbjct: 61 RRFTDEQQHLRWQNFRHIESADELLRVVRDELFPFFKTTSGEGSLFAEFMKDAQLMIQKP 120 Query: 101 KQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTII 160 + + ++ L D GD+YE LL K GQ+ TPR +I+ ++ Sbjct: 121 ALLRKAIDMVNDLPL------SQGDTKGDLYEYLLSKLTTA--GINGQFRTPRHIIRAMV 172 Query: 161 HLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLD----------------------D 198 ++ P+ + + DPA GTAGFL ++ + + D D Sbjct: 173 DMMDPKATDRICDPACGTAGFLSTTYEFMLEKYSSKDGTIREMVVDENGEEQEQVIYTGD 232 Query: 199 LDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI-EGNLDHGGAIRLGNTLGSDGENL 257 L D ++ F G + R+A MN ++H + E ++ + + G Sbjct: 233 LLADHREHVDRDMFHGFDFDATMLRIAAMNLVMHGVTEPDIHYQDTLSQGFIERFPQSAR 292 Query: 258 PKAHIVATNPPFGSAAGTNITRTFV---HPTSNKQLCFMQHIIETLHPGGRAAVVVPDNV 314 +V NPPF + + T +L F+ I+ L GGRAAV+VPD V Sbjct: 293 EGFDLVLANPPFKGSLDEEDVDPEILRTVKTKKTELLFIALILRMLKVGGRAAVIVPDGV 352 Query: 315 LFEGGK-GTDIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCT 372 LF K +R+ +++ L I+ LP+G+F GV T V+ FTKG T Sbjct: 353 LFGSSKAHQQLRKSMIEDNQLEAIVSLPSGVFKPYAGVSTAVMIFTKG---------GQT 403 Query: 373 DDVWVYDLRTNMPSF-GKRTPFTDE---HLQPFERVYGEDPH-GLSPRTEGEWSFNAEET 427 D VW YDL+ + S KRTP + E L + E H ++ +W+ + Sbjct: 404 DRVWFYDLQADGFSLDDKRTPLSGEGSDDLPDLVEQWAEYSHLAAVGKSVEQWNDKTAKA 463 Query: 428 EVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLA 486 + + E + L+ R+++ E + + L + + L + + + Sbjct: 464 FLVEKTEIASNKYDLSIKRYKEVPYEKEDYEPPLEI-LKRLMELEVEIQSDLNDLERML 521 >UniRef50_B4S4B5 N-6 DNA methylase n=3 Tax=Bacteria RepID=B4S4B5_PROA2 Length = 547 Score = 297 bits (759), Expect = 1e-78, Method: Composition-based stats. Identities = 89/567 (15%), Positives = 181/567 (31%), Gaps = 105/567 (18%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA-------------- 47 N L + +W+ ++R G Y + + L+F K + + Sbjct: 7 NRKSLESWIWEAACSIR-GAKDAPKYKDYILPLIFTKRLCDVFDDELNRIAAEVGSRKKA 65 Query: 48 ------------------EYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAV 89 PE W ++ + + + ++ L+Q + Sbjct: 66 FQLARADHKLVRFYLPLIPDDPEQPVWSVIRKLS-DRIGEGVTTYMRAIARENP-LLQGI 123 Query: 90 FHNVSTT-------ITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANET 142 V + +++ L+ + + G D G YE L++K A Sbjct: 124 IDRVDFNATTHGQRDLDDDRLSNLIEAISTKRL--GLDDVEADIIGKSYEYLIRKFAEGG 181 Query: 143 KSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGD 202 AG+++TP + + L+P+ + DP G+ G L++ + ++ Q ++ + Sbjct: 182 GQSAGEFYTPPEVGTIMSRALQPEQGMEIYDPTCGSGGLLVKCEIAMEEQRREIKEGGHS 241 Query: 203 TQDFQIHRA-------------------FIGLELVPGTRRLALMNCLLHDIEGNLDHGGA 243 G E +P T +A MN ++HD+EG ++ G Sbjct: 242 CPPLHSELNGYPLCNGGLENPPSFAPLKLFGQEYIPETWAMANMNMIIHDMEGQIEIGDT 301 Query: 244 IRLGNTLGSDGENLPKAHIVATNPPFGSAA------GTNITRTFV-----HPTSNKQLCF 292 + G L V NP + + F S+ + Sbjct: 302 FKNPKFRNKQG-KLRTFDRVVANPMWNQDWFTEADYDNDELDRFPAGAGFPGKSSADWGW 360 Query: 293 MQHIIETLHPGGRAAVVVPDNVLFEG------GKGTDIRRDLMDKCHLHTILRLPTGIFY 346 +QH+ +L+ GRAA+V+ + G K ++R+ +D + ++L LP +FY Sbjct: 361 VQHMHASLNDTGRAAIVLDTGAVSRGSGNAGTNKEKNVRKWFVDNDIIESVLYLPENLFY 420 Query: 347 AQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYG 406 VLF K + V++ + + DE ++ Sbjct: 421 NTTAPGIVLFLNKAKPEDRKS------KVFLVNASRIFEKGDPKNFIPDEGIKRIVDTLI 474 Query: 407 EDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDIS 466 + + + D E K D +++ SR+ I Sbjct: 475 GWKEEE------------KLSRIVDHAELKKNDYNISPSRYIHTGEAETYRL------IP 516 Query: 467 WLKDKDSIDADSLPEPDVLAAEAMGEL 493 + + + + E D + +L Sbjct: 517 EIVKELNAIEEEARETDKALRNILKQL 543 >UniRef50_A8ZY58 N-6 DNA methylase n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZY58_DESOH Length = 490 Score = 297 bits (759), Expect = 1e-78, Method: Composition-based stats. Identities = 123/466 (26%), Positives = 203/466 (43%), Gaps = 44/466 (9%) Query: 3 NNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPE---------- 52 ++ + CD L GV +NYV +LA L FLK E E + Sbjct: 9 RQEVQQIVKNACDQLNQEGVDARNYVEQLAWLFFLKAFDEAETRREQEADFDDTAYGRRL 68 Query: 53 --GYRWDDLKSRIG--QEQLQFYRKML-VHLGEDDKKL----------VQAVFHNVSTTI 97 Y W + L+F L + L D + + +F NV Sbjct: 69 SGQYAWSSWARNTDHPDQMLEFVDGKLWIKLTSPDPQKGLGDDLLAQRFRRIFDNVRNYC 128 Query: 98 TEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIK 157 +V +D L + + ++YE LL++ A ++ AG+++T R +I+ Sbjct: 129 RRGISFARVVQQVDKLHFSSETDVI---VLSEIYEDLLKRVAADSAGYAGEFYTQRHIIR 185 Query: 158 TIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLEL 217 ++ +++P+P++ V DP GTAGFL EA Y++ L G D + F GLE+ Sbjct: 186 AMVEVVQPKPKDKVYDPCFGTAGFLGEAADYIRRNN----TLSGPQLDALQKKTFYGLEI 241 Query: 218 VPGTRRLALMNCLLHDIE-GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTN 276 P T L MN +LH IE NL+ + + + + ++ +NPP+G + Sbjct: 242 KPLTYLLGTMNMILHGIEGANLELTNTLEIH---SQNVGEKARYDVILSNPPYGGKMASG 298 Query: 277 ITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHT 336 + F +S + F+QHI+ L GGRA VV+P+ VLF GG +R++L+++ ++HT Sbjct: 299 MQTNFRVRSSATECLFLQHIMANLAKGGRAGVVIPEGVLFRGGPDQKVRKELLEQFNVHT 358 Query: 337 ILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFG-KRTPFT 394 IL LP G F GVKTNV+FF + + T VW +L + R P Sbjct: 359 ILSLPAGCFLPYTGVKTNVIFFDRPKDDS------GTKSVWFCELTNDGFELKSTRKPIE 412 Query: 395 DEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQ 440 + L F + + G + T + +++ N+ + Sbjct: 413 GDQLPDFLAKWEKRKAGDNSWTVPIEKIIEQGYDLSAKNPNRKDEY 458 >UniRef50_C7MM99 Type I restriction system adenine methylase HsdM n=8 Tax=Bacteria RepID=C7MM99_CRYCD Length = 856 Score = 296 bits (758), Expect = 1e-78, Method: Composition-based stats. Identities = 94/515 (18%), Positives = 172/515 (33%), Gaps = 95/515 (18%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKE------------------ 42 MN L +K+W+ + +R + Y + + +F K E Sbjct: 1 MNKQQLASKIWESANKMR-STIEASQYKDYILGFIFYKFLSETEVARLKAKDFAESDLPT 59 Query: 43 ------------TGQEAEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGED----DKKLV 86 G+ ++ + ++ ++ R L + KK+ Sbjct: 60 LTEDDPETVAFVRGECGYFIAYDDLFQTWIAKGKDFEIADVRDALSAFDRNVSPAHKKVF 119 Query: 87 QAVFHNVSTTITEPKQI-----TALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANE 141 + +F + T +++ A + + + D G +YE LL+K A Sbjct: 120 EKIFETLQTGLSKLGTDARSQSKAARDLIQLIKDIPMDGRQDYDVLGYIYEYLLEKFATN 179 Query: 142 TKSGAGQYFTPRPLIKTIIHLL----KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLD 197 AG+++TP + + I ++ + + + + DP +G+ LI + V + + D Sbjct: 180 AGKKAGEFYTPHEVSQLISEIVAWHLQSRRQIEIYDPTSGSGSLLINIGKAVARRNGNPD 239 Query: 198 DLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENL 257 + + EL T L MN ++ I + A+R G+TL D Sbjct: 240 SIK-----------YYAQELKENTYNLTRMNLVMRGILPDNI---AVRNGDTLADDWPWF 285 Query: 258 PKA------------HIVATNPPFGSAAG------TNITRTFVHPTSNKQLCFMQHIIET 299 V +NPP+ V P S F+ H + Sbjct: 286 DTVENKDETYKPLFVDAVVSNPPYSQDWDPVDKEIDPRFEYGVAPKSKADYAFLLHDLYH 345 Query: 300 LHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTK 359 L G +V+P VLF GG+ IRR+L++ H+ I+ LP IF+ G+ T ++ K Sbjct: 346 LRNDGIMCIVLPHGVLFRGGEEGLIRRNLVEHRHIQAIIGLPANIFFGTGIPTIIMVLRK 405 Query: 360 GTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGE 419 A D+V V D GK ++ Sbjct: 406 QRAA-------GDDNVLVVDASKYFMKEGKNNKLRASDIKRIVDA------------VTT 446 Query: 420 WSFNAEETEVADSEENKNTDQHLATSRWRKFSREW 454 + + +E + D +L R+ S Sbjct: 447 NTDVDSFSRSVTIDEIRKNDYNLNIPRYVDSSEAP 481 >UniRef50_B3CDF6 Putative uncharacterized protein n=1 Tax=Bacteroides intestinalis DSM 17393 RepID=B3CDF6_9BACE Length = 498 Score = 296 bits (758), Expect = 1e-78, Method: Composition-based stats. Identities = 107/515 (20%), Positives = 200/515 (38%), Gaps = 67/515 (13%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVS-YQNYVNELASLLFLKMCKETGQEAEYLPE------- 52 M D+ K+ + + G + ++ LLF+KM + +E E + Sbjct: 1 MITGDIKQKVDDVWQTFWNNGFTQPSAIFEQITYLLFMKMLDDKQREKEAIANLTGDVLL 60 Query: 53 ---------------------GYRWDDLKSRIGQEQLQFYRKMLVHLGE---DDKKLVQA 88 RW K + L R + + + Sbjct: 61 NPTFPEGVWRNPSTDKDVPYHEMRWHVFKEMEPTKMLDRVRNDVFIFLRHVGKEGSAYRK 120 Query: 89 VFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQ 148 + IT + ++ ++ +++++ D GD+YE +L A GQ Sbjct: 121 AMEDTVFQITNARLLSRVIESIENI------TSDGADMMGDVYEYMLGIMAAS--GTNGQ 172 Query: 149 YFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQI 208 + TPR +I+ ++ L++P + + DPA G+AGF++EA +++ +D D L+ D Sbjct: 173 FRTPRHIIRMMVELMRPTLNDTICDPAMGSAGFIMEAAKFITEHQSD-DLLNIGEGDRFR 231 Query: 209 HRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPP 268 F G + R+ MN +LHD++ + N+L + + + + NPP Sbjct: 232 KEIFHGSDSDASMLRIGCMNMMLHDVD-----EPNLYYRNSLSDENNDTNRYTLCLANPP 286 Query: 269 FGSAAGTNITRTFVH---PTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFE-GGKGTDI 324 F + T+ + T +L F+ ++ L GGR A +VPD VL I Sbjct: 287 FAGSLDTDDIAHTLKAAVKTKKTELLFLALMMRMLQSGGRCASIVPDTVLTGDAQAYKTI 346 Query: 325 RRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTN 383 R L+DK + ++ +P+G+F GV T ++ FTK TD VW YD+R + Sbjct: 347 RSALVDKHCMQAVITMPSGVFQPYSGVSTAIIIFTKTGTG-------GTDKVWFYDMRAD 399 Query: 384 MPSFGKRTPFTDE--HLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQH 441 S + E + + + E++ ++E + Sbjct: 400 GFSLTTQRTPQPEQNDIPDIISRFHNLEAETDRSRK-------EQSFFVTADEIRANGYD 452 Query: 442 LATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDA 476 L+ R+ + RE I +++ + + +IDA Sbjct: 453 LSYKRYHEVEREVIEYEAPETIIARMEERQKAIDA 487 >UniRef50_A9A373 Type I restriction-modification system, M subunit n=1 Tax=Nitrosopumilus maritimus SCM1 RepID=A9A373_NITMS Length = 523 Score = 296 bits (758), Expect = 1e-78, Method: Composition-based stats. Identities = 105/529 (19%), Positives = 195/529 (36%), Gaps = 66/529 (12%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA------------- 47 + L +L+ D LR + + +LLFLK + +E Sbjct: 7 LTFEQLEQRLFDAADILRKH-LDASENRKPVLTLLFLKRLNDIFEENVEKLMKDEGLSKK 65 Query: 48 ----------EYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTI 97 YLPE RW+ L + ++ ++ + + ++K + I Sbjct: 66 EAENKRRHPIFYLPEDTRWNKL-QNVSEDVGSKIIEICKKIEDANQKKLGGTMMVSEFNI 124 Query: 98 TEPKQITALVSNMDSLDWYNG-------AHGKSRDDFGDMYEGLLQKNANETKSGAGQYF 150 E TALV +D + + ++ D FGD YE LL+ A+ETK GQ++ Sbjct: 125 KEKYPDTALVKLIDHFSTTDEGYFRLRNSDLENEDIFGDAYEQLLEMFASETKKKGGQFY 184 Query: 151 TPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHR 210 TPR +++ ++ L++P+ + DP G+ G LI + +YV+ + ++ + Sbjct: 185 TPRKVVQLLVELMEPKYDYRINDPTCGSGGMLIHSRQYVEKSLKKEKKSSKEIEELLKNL 244 Query: 211 AFIGLELVPGTRRLALMNCLLHDIE-GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPF 269 G + T + MN ++H + +++ G + + L + V N PF Sbjct: 245 TLHGQDSNIDTVNMCKMNMVIHGVPSFSIEWGDVLESPKFVKD--GKLIEYDRVLANFPF 302 Query: 270 GSAA--------GTNITRTFVHPTSN-KQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGK 320 G + + P + F+ H++ +L+ G+AA+V VLF G Sbjct: 303 SENWEASGKENDGYGRFKYGIAPAKDKADFAFILHMLSSLNENGKAAIVCSQGVLFRGSS 362 Query: 321 GTDIRRDL--------MDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCT 372 IR ++ + + I+ LP +FY G+ VL K Sbjct: 363 EQKIRENMIAGNKDENLQGDMIEAIIALPVALFYGTGIPACVLILNKNKPKERK------ 416 Query: 373 DDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADS 432 + + R D+ ++ + + E ++ AE E+ ++ Sbjct: 417 NKILFIYAANEFQEGKVRNKLRDKDIEHIVKAFKAFKD------EDKYCHVAELDEIREN 470 Query: 433 EENKNTDQHLATSRWRKFSREW--IRTAKSDSLDISWLKDKDSIDADSL 479 E N N +++ S K I K + L+ K D L Sbjct: 471 EFNLNVPRYVDISEEEKIIDIQATIDELKKLDKERDELELKVKQDLKEL 519 >UniRef50_UPI0001B4AB1B type I restriction-modification system methylation subunit n=1 Tax=Bacteroides fragilis 3_1_12 RepID=UPI0001B4AB1B Length = 512 Score = 296 bits (757), Expect = 2e-78, Method: Composition-based stats. Identities = 87/491 (17%), Positives = 187/491 (38%), Gaps = 77/491 (15%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEY----------- 49 + ++ + LW +LR G + Y + LLF K + E Sbjct: 15 ITLDEFKSFLWAAATHLR-GQIDAAGYKEYIFPLLFFKRISDVYDEQFEGFVCEGGVEYA 73 Query: 50 ----------LPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKL---------VQAVF 90 +PEG W D++ + + + + + + ++ +F Sbjct: 74 GKQVEDLPIRIPEGAHWRDVREVT-ENVGNKLVEAFIAIEQANPAKEMDGRKIGGLEGIF 132 Query: 91 HNVSTTITEPKQITALVSNM--DSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQ 148 + K ++++++ D + D+ G YE L+ K A++ + A + Sbjct: 133 GPKDGWTNKAKMPDSIITSLIEDFSKYTLSLKACPADEMGQAYEYLVGKFADDAGNTAQE 192 Query: 149 YFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQI 208 ++T R +++ + +L+PQP E + DP G+ G L++ Y++++ ++ + Sbjct: 193 FYTNRTVVQLMAEILQPQPNESIYDPTCGSGGMLVKCLDYLRNKGDEWQSV--------- 243 Query: 209 HRAFIGLELVPGTRRLALMNCLLHDI-EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNP 267 G E+ T +A MN L+ + + ++ + L DG +L K IV NP Sbjct: 244 --QVFGQEVNGLTSSIARMNLYLNGVEDFSIVCADTLEHPAFL--DGSHLRKFDIVLANP 299 Query: 268 PFGSAAGTNIT-------RTFV--HPTSNKQLCFMQHIIETLHP-GGRAAVVVPDNVLFE 317 P+ R F+ P F+QHI+ +++ GR A+++P +LF Sbjct: 300 PYSIKEWNREKFMNDKWGRNFLGTPPQGRADYAFIQHILASMNEKNGRCAILLPHGILFR 359 Query: 318 GGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWV 377 + DIR+ L+ L ++ L +FY ++ +LF K + D + Sbjct: 360 -QEEKDIRKSLVLSDSLEAVIGLGPNLFYNSPMEACILFCNKNKPQHLK------DKIIF 412 Query: 378 YDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKN 437 + + + ++H++ + + S + E D + N Sbjct: 413 INAINEVTRKNGESYLEEKHIKKILSAFYNN------------SDIPQFKETIDINDICN 460 Query: 438 TDQHLATSRWR 448 + ++ ++ Sbjct: 461 NEYDISIQKYV 471 >UniRef50_C5S255 Type I restriction-modification system n=2 Tax=Actinobacillus minor RepID=C5S255_9PAST Length = 840 Score = 295 bits (756), Expect = 2e-78, Method: Composition-based stats. Identities = 106/562 (18%), Positives = 188/562 (33%), Gaps = 88/562 (15%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLK 60 MN L A LW ++LR G + Y N + LF K E QE + +++L Sbjct: 1 MNKQQLAATLWASANDLR-GKMDASEYKNYILGFLFYKFLSE-HQENYLVQNEVSFEELD 58 Query: 61 SRIGQEQLQ---------------------------FYRKMLVHLGEDD----KKLVQAV 89 S + + + H E+ K + V Sbjct: 59 SDSIETIKEDLGYFIAQEDLYRTWIVNISENKWKLSHVTDAINHFNENLYDSQKDDFEGV 118 Query: 90 FHNVSTTITE-----PKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKS 144 F +++ T + + +A+ ++ L+ D FG +YE L+ + A + Sbjct: 119 FSDLNLTSEKLGKNLSDKESAVKKLIELLNGIKITDNSEYDVFGYIYEYLIAQFAMASGK 178 Query: 145 GAGQYFTPRPLIKTIIHLLKPQPREV----VQDPAAGTAGFLIEADRYVKSQTNDLDDLD 200 AG+++TP + + + ++ + R+ V DP AG+ L+ V Sbjct: 179 KAGEFYTPHQVSRIMAEIVADELRQKEQCAVYDPTAGSGSLLLTVSEAVNRN-------- 230 Query: 201 GDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDG------ 254 + + + F G E T +A MN L+ ++ +R +TL SD Sbjct: 231 ----EHRDNIQFFGQEENNTTYNIARMNLLMRGVKPANMI---LRNADTLKSDWPYGEIN 283 Query: 255 --ENLPKAHIVATNPPFGSAAGTNI-------TRTFVHPTSNKQLCFMQHIIETLHPGGR 305 + V NPP+ + T P + F+ H + L G Sbjct: 284 GEDTPLFVDCVVANPPYSAKWDTERADKDVRFKEYGTAPATKADYAFLLHSLYHLKSDGI 343 Query: 306 AAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANP 365 A+V+P VLF G + IR L+ + + I+ LP GIF G+ T V+ K N Sbjct: 344 MAIVLPHGVLFRGNEEEKIRTKLLQRRQIDAIIGLPAGIFTNTGIPTIVMILRKQPKHN- 402 Query: 366 NQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAE 425 +V D + ++ VY + +S A+ Sbjct: 403 --------NVLFIDASQGFRKEKNSNVLRERDIKKILDVYRKRE------VRAGFSHLAD 448 Query: 426 ETEVADSEENKNTDQHLAT-SRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDV 484 TE+ ++ N N +++ S+ + + DI D Sbjct: 449 LTEIESNQFNLNIPRYITPVSKNESQNIDAHLNGGIPDEDIDQFSDFWQAFPTLRKTLFS 508 Query: 485 LAAEAMGELVQALSELDALMRE 506 L E+ + + Sbjct: 509 PLRTGFSTLNIKAEEIFNTIEQ 530 >UniRef50_D1X0A9 N-6 DNA methylase n=2 Tax=Bacteria RepID=D1X0A9_9ACTO Length = 867 Score = 295 bits (756), Expect = 2e-78, Method: Composition-based stats. Identities = 123/494 (24%), Positives = 207/494 (41%), Gaps = 68/494 (13%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQ-NYVNELASLLFLKMCKETGQEAE----------- 48 M +L +K+ ++ D GG+S + ++ LLF+K E + Sbjct: 1 MITGELKSKVGRVWDAFWSGGISNPLEVIEQITYLLFIKRLDEIQIRKDNRASRTAKPDP 60 Query: 49 -----YLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGED---DKKLVQAVFHNVSTTITEP 100 + RW + K+ + + + + D + TI P Sbjct: 61 DPLFAEDQQELRWQNFKACDPEVMYRIVEQGVFPYLRAMGGDGSTYSHHMRDARFTIPGP 120 Query: 101 KQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTII 160 + +V +DS+ +S D GD+YE LL K A + GQ+ TPR LI+ ++ Sbjct: 121 NLLAKVVELLDSIAM------ESSDTAGDIYEYLLAKIATSGR--NGQFRTPRHLIRLMV 172 Query: 161 HLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPG 220 + +P+P + V DPA GTAGFL+++ YVK + LD + Q F G + Sbjct: 173 EMTQPKPDDEVCDPACGTAGFLVQSASYVKREHAKAL-LDVEQQAHFNASMFHGFDFDST 231 Query: 221 TRRLALMNCLLHDIE-GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITR 279 R+ MN LLH IE ++ + ++ + S + ++ NPPF + T Sbjct: 232 MLRIGSMNMLLHGIENPDIRYRDSL-----VESSAGEAERYSLILANPPFAGSLDYESTA 286 Query: 280 TFVHP---TSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGK-GTDIRRDLMDKCHLH 335 + P T +L F+ + L PGGRAAV+VPD VLF K ++RR L++ L Sbjct: 287 ADLLPVVKTKKTELLFLALFLRLLKPGGRAAVIVPDGVLFGSTKAHKELRRTLVEDHKLD 346 Query: 336 TILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSF-GKRTPF 393 +++LP+G+F GV T +L FT+ D TD+VW YD++ + S +R P Sbjct: 347 GVVKLPSGVFKPYAGVSTAILLFTRT-------DSGGTDNVWFYDVQADGFSLDDRRNPL 399 Query: 394 TDEH--------------------LQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSE 433 E L + + R E SF ++++ Sbjct: 400 LPEDRLGVRPAAGSLSEEEHTKNNLPDVLSRWFDRGGSERNRARTEQSFCVPKSDIVAQG 459 Query: 434 ENKNTDQHLATSRW 447 + + +++ R+ Sbjct: 460 YDLSLNRYAERPRY 473 >UniRef50_B1VEP0 Type I restriction-modification system, methyltransferase subunit n=1 Tax=Corynebacterium urealyticum DSM 7109 RepID=B1VEP0_CORU7 Length = 524 Score = 295 bits (755), Expect = 2e-78, Method: Composition-based stats. Identities = 122/542 (22%), Positives = 216/542 (39%), Gaps = 77/542 (14%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVS-YQNYVNELASLLFLKMCKETGQEAEYLPE------- 52 M L ++ + + GG+S + + + LLF++ E ++ E Sbjct: 1 MITGALKNQVDAIWNTFWSGGISEPVSVIQQFTYLLFMRQLDERQANNDFQREALGVEPD 60 Query: 53 ----------GYRWDDLKSRI-GQEQLQFYRKMLVHLGEDDKKL-VQAVFHNVSTTITEP 100 RW +L G ++ + + + S I P Sbjct: 61 IPDVFTEDQQHLRWRNLMEISDGSDRREVIVNEAFPFIRNLGGSGFGRHMRDASFGIENP 120 Query: 101 KQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTII 160 + ++ +D+L++ N RD GD+YE +L K A+ GQ+ T +I ++ Sbjct: 121 ATLLRVMEQVDALEFTN------RDMSGDLYEYMLSKLASS--GTNGQFRTTSHIIDLMV 172 Query: 161 HLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPG 220 L++P P+ V DPA GTAGFL+ A + + D + +D D+ RA G + Sbjct: 173 ELMRPAPKHRVIDPACGTAGFLVGAREWTRHHHAD-EFMDRRVSDWYTQRALTGFDFDSS 231 Query: 221 TRRLALMNCLLHDI-EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGT---N 276 R+A MN +H + N+ + +++ + I+ NPPF + + Sbjct: 232 MVRIAAMNMFMHGFEDPNISYRDSLQQ-----VPEADREAFDIILANPPFAGSIDESSLD 286 Query: 277 ITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGK-GTDIRRDLMDKCHLH 335 + + +L F+ + L PGGRAAV+VP+ VLF K +IR+ L+D+ L Sbjct: 287 PELANLISSKRTELLFLARFLTLLKPGGRAAVIVPEGVLFGSTKAHREIRKHLIDEQRLD 346 Query: 336 TILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSF-GKRTPF 393 +++LP+G F GV T +L FT+ D+ TDDVW Y++ + S KRTP Sbjct: 347 AVIKLPSGTFKPYSGVSTAILCFTRT-------DRGSTDDVWFYEVTADGYSLDDKRTPL 399 Query: 394 TDEHL----------------------------QPFERVYGEDPHGLSPRTEGEWSFNAE 425 D +L + + + + E Sbjct: 400 LDANLLGPRPTERVADSSVPGDDPAEVLLTSEQHEANNLPDVLARWVERSGKEKERARTE 459 Query: 426 ETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVL 485 ++ E + L+ +R+++ E T + I +K+ DS A+ L E + + Sbjct: 460 QSFTVPVAEIREAGYDLSMNRYKEIVFEAEDTRDPLEI-IGEIKELDSAIAEGLAELEEM 518 Query: 486 AA 487 Sbjct: 519 LR 520 >UniRef50_B2UNL2 Type I restriction-modification system, M subunit n=8 Tax=Bacteria RepID=B2UNL2_AKKM8 Length = 853 Score = 295 bits (755), Expect = 3e-78, Method: Composition-based stats. Identities = 91/534 (17%), Positives = 167/534 (31%), Gaps = 94/534 (17%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETG----QEAEYLPEGY-- 54 MN L +K+W+ + +R + Y + + +F K + +E ++ + Sbjct: 1 MNKQQLASKIWESANKMR-SKIEANEYKDYILGFIFYKFLSDKEVKFLKENDWTDDDLPH 59 Query: 55 ------------------------RWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVF 90 + + + L + VF Sbjct: 60 VTEDDAETVDYIRSNVGYFISYKHLFSTWIDKGSDFNAADVTEALSAFSRLINPSHKKVF 119 Query: 91 HNVSTTI---------TEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANE 141 V T+ + A+ + + + D G +YE L+ A Sbjct: 120 DKVFATLETGLSKLGENSGARTKAIRDLLHLIKDIPMDGRQDYDVLGFIYEYLISNFAAN 179 Query: 142 TKSGAGQYFTPRPLIKTIIHLLKPQPRE----VVQDPAAGTAGFLIEADRYVKSQTNDLD 197 AG+++TP + + ++ ++ + DP +G+ LI + V D Sbjct: 180 AGKKAGEFYTPHEVSLLMSEIVAAHLKDRQQIKIYDPTSGSGSLLINIGKCVARYMGGGD 239 Query: 198 DLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLD---HGGAIRLGNTLGSDG 254 ++ + EL T L MN ++ I N +G + D Sbjct: 240 NIK-----------YYAQELKENTYNLTRMNLVMRGILPNNIVTRNGDTLEEDWPYFDDN 288 Query: 255 ENLPKAH-----IVATNPPFGSAAG------TNITRTFVHPTSNKQLCFMQHIIETLHPG 303 + + V +NPP+ + R + P F+ H + L P Sbjct: 289 DPVNTYDPLYVDAVVSNPPYSQSWNPADKESDPRYRFGLAPKGKADYAFLLHDLYHLKPD 348 Query: 304 GRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVA 363 G +V+P VLF GG IRR+L++ H+ I+ LP IF+ G+ T ++ Sbjct: 349 GIMTIVLPHGVLFRGGTEGAIRRNLVEYNHIDAIIGLPANIFFGTGIPTIIMVLK----- 403 Query: 364 NPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFN 423 K DV + D GK ++ V Sbjct: 404 ----QKRENTDVLIVDASKGFAKVGKNNVLRACDIKKIVDVVSARAD------------V 447 Query: 424 AEETEVADSEENKNTDQHLATSRWR----KFSREWIRTAKSDSLDISWLKDKDS 473 + +V +E + D +L R+ K R I + +S L D Sbjct: 448 EKFAKVVSLDEIRGNDYNLNIPRYVDSSDKNERWDIFATMFGGIPLSELADFHE 501 >UniRef50_C4Z2E8 Type I restriction enzyme M protein n=4 Tax=Firmicutes RepID=C4Z2E8_EUBE2 Length = 892 Score = 295 bits (755), Expect = 3e-78, Method: Composition-based stats. Identities = 114/580 (19%), Positives = 201/580 (34%), Gaps = 92/580 (15%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPE-------- 52 + L A LW CD LR GG+ Y + + +LLF+K + + + Sbjct: 3 VKKTQLYASLWASCDKLR-GGMDSSEYKDYILTLLFMKYVTDKFKNKGAYEDIKVFDKAH 61 Query: 53 ----------GYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEP-- 100 G +DD + G++ + ++ D+ ++ V + Sbjct: 62 DKDPDPEKRTGCSFDDFIALKGKKNIGEGMDKIIARLADENTDLKGVIDIAHFNDEKKLG 121 Query: 101 ------KQITALVSNMDSLDW-YNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153 ++T L+S + ++ + D GD YE L++K A E+ GQ++TP Sbjct: 122 SGKEMVDKLTDLISIFQRPELDFSRNKAEGDDIIGDAYEYLMRKFATESGKSKGQFYTPA 181 Query: 154 PLIKTIIHLLKPQP----REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIH 209 + + + +++ V DPA G+ LI A Sbjct: 182 EVSRILANVVGISHCTDASATVCDPACGSGSLLIRAID-----------------AAPFP 224 Query: 210 RAFIGLELVPGTRRLALMNCLLHDI-EGNLDHGGAIRLGNTLGS-DGENLPKAHIVATNP 267 G E T LA MN +LH E + G + D L + + NP Sbjct: 225 IMGYGQEKESTTAGLAKMNAVLHRKAEIIIKSGNTFSNPQYMDKSDNSVLERFDYIVANP 284 Query: 268 PFGSAAGTN-----ITRTFV-----HPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFE 317 PF + F P N ++ HI++TL G+AAV++P VLF Sbjct: 285 PFSMKNWRDGIAGKEYGRFEGYGDMPPEKNGDYAWLMHILKTLKSNGKAAVILPHGVLFR 344 Query: 318 GGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWV 377 G IR ++ K + I+ LP +FY G+ VL K AN +++ Sbjct: 345 GNAEATIRETIIKKHWIKGIISLPANLFYGTGIAACVLVIDKEGAANRQG-------IFM 397 Query: 378 YDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEEN-K 436 D G + + + + E + ++E K Sbjct: 398 IDASRGYVKDGNKNRLRERDIYRIITTFNEQITTD-----------PKYARFVPNDEIEK 446 Query: 437 NTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQA 496 + +L +R+ + + +ID D L + + EL+ A Sbjct: 447 KNEYNLNITRYIDST----DPEDIQDIYAHIHGGIPAIDIDGLSKYWKVFPSLKSELLSA 502 Query: 497 LS--------ELDALMRELGASDEADLQRQLLEEAFGGVK 528 +S E +++ + + + E + L+EAF K Sbjct: 503 ISEKYYSLNVEHESIRQTIYKNTEFSKYGEKLDEAFAAWK 542 >UniRef50_C7NP01 N-6 DNA methylase n=2 Tax=Halobacteriaceae RepID=C7NP01_HALUD Length = 493 Score = 295 bits (754), Expect = 4e-78, Method: Composition-based stats. Identities = 94/530 (17%), Positives = 186/530 (35%), Gaps = 77/530 (14%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQ--------------- 45 + ++L + L+K D +R V Y + + L++ K + + Sbjct: 3 LTLDELDSHLFKCADIIR-DAVDSTEYKDFILPLVYYKTISDNFEVQREKYVEEYGDEHA 61 Query: 46 ------EAEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVS--TTI 97 + Y+P+GY WDDL++ + + + L E + V+ VF Sbjct: 62 NRPNIYDVPYVPDGYLWDDLRA-VNENVDEAINDAFDALREANDGEVEGVFRADYVAEDA 120 Query: 98 TEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIK 157 ++T L+ ++ ++D N D G+ Y L++ A E GQ+FTP +++ Sbjct: 121 LTDDRLTRLIEHLSTIDLDN--DSVPPDMLGEAYMDLVRHFAEEEGKSGGQFFTPPHIVE 178 Query: 158 TIIHLLKP-QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLE 216 ++ LL P + + DP G+ G L+EA + + + F G E Sbjct: 179 LMVRLLAPFEDGDTFHDPTVGSGGMLVEAATHYRDEQGGDPS----------KLTFTGQE 228 Query: 217 LVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTN 276 + P +A MN +H + G ++ ++ ++ L K V N PF + + Sbjct: 229 INPDIAAIAKMNLSIHGLSGRIEREDSLLRPQF--TENGELTKFDYVLANFPFSADWQKD 286 Query: 277 I----------TRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRR 326 + F+ H+ E L+ G+AA+V+P VLF + R Sbjct: 287 ELQDDTYGRFDWHEKLPRADRGDYAFIMHMAEQLNETGQAAIVIPHGVLFRKH-ESRYRE 345 Query: 327 DLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTN--M 384 +++ + I+ LP +F + + +L A +V Sbjct: 346 PMLENDLVEAIVGLPENLFQNNSIPSAILLLNTDKPAERE------GEVQFIHAADEAFY 399 Query: 385 PSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLAT 444 + TDE + + + W+ + EE + D +L Sbjct: 400 RELSNQNELTDEGVAHVVENFRD------------WTTEERVSRTVSIEEIRENDYNLNI 447 Query: 445 SRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELV 494 + + + + +D++ E + + M L Sbjct: 448 ALYVDTT------EPEEEIDVAEELATLRELQAERDEIEARMDQHMEALN 491 >UniRef50_Q2KZB8 Restriction-modification system, modification (Methylase) subunit (Fragment) n=24 Tax=Bacteria RepID=Q2KZB8_BORA1 Length = 924 Score = 295 bits (754), Expect = 4e-78, Method: Composition-based stats. Identities = 104/586 (17%), Positives = 194/586 (33%), Gaps = 87/586 (14%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKET----------------- 43 +N L AK+W+ + +R + Y + + +F K + Sbjct: 1 VNKQQLAAKIWESANQMR-SKIEANEYKDYILGFIFYKYLSDRLVAFASAEDFTDEDFSA 59 Query: 44 -GQEAEYLPEGYR------------WDDLKSRIGQEQLQFYRKMLVHLGE----DDKKLV 86 +E E ++ + + + R+ L + K+L Sbjct: 60 VTEEDTETVEHFKSNLGYFIAHKHLFSTWLDQTSDFTVGDVREALSAFSRLIHPNHKRLF 119 Query: 87 QAVFHNVSTTITE-----PKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANE 141 + +F + T +++ KQ A+ + + + D G +YE L+ A Sbjct: 120 EGIFKTLETGLSKLGDTAAKQTKAIGDLLQLIKDIPMDGKQGYDVLGFIYEYLIGMFAAS 179 Query: 142 TKSGAGQYFTPRPLIKTIIHLLKPQPREV----VQDPAAGTAGFLIEADRYVKSQTNDLD 197 AG+++TP + + ++ ++ + D +G+ L+ + + D D Sbjct: 180 AGKKAGEFYTPHEVSVLMSEVIAHHLKDRETIQIYDSTSGSGSLLLNIGQAIAKHMGDKD 239 Query: 198 DLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI-EGNL--DHGGAIRLGNTLGSDG 254 + + EL T L MN ++ I GN+ + + + Sbjct: 240 SIK-----------YYAQELKENTYNLTRMNLVMRGILPGNIVTRNADTLEDDWPYFDEQ 288 Query: 255 ENLPKA-----HIVATNPPFGSAAGT-------NITRTFVHPTSNKQLCFMQHIIETLHP 302 + + V +NPP+ R + P S F+ H + L P Sbjct: 289 DPVNSYNPLYLDAVVSNPPYSQKWDPLHKDADPRYARFGLAPKSKADYAFLLHDLYHLKP 348 Query: 303 GGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTV 362 G A+V+P VLF GG+ IR+ L++ HL TI+ LP+ IF+ G+ T +L Sbjct: 349 NGIMAIVLPHGVLFRGGEEGVIRKQLIENDHLETIIGLPSNIFFGTGIPTVILVLR---- 404 Query: 363 ANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSF 422 K + DV D GK ++ V + Sbjct: 405 -----QKRESSDVLFVDASKGFAKEGKNNKLRACDIKKITDVVIARATVPGFSRLVPKTE 459 Query: 423 NAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEP 482 ++ N N +++ +S + + T+ + +S L D S + P Sbjct: 460 LQG----EANDYNLNIPRYVDSSEPPE--SWDLYTSMFGGIPLSEL-DALSDFWKAFPNL 512 Query: 483 DVLAAEAMGELVQALSELDALMRELGASDEADLQRQLLEEAFGGVK 528 G A + D L + E Q AF G K Sbjct: 513 RTALFAVDGT-PYAQPKADDLAEAVRQHPEVKQFSQSFTRAFDGFK 557 >UniRef50_Q2FXD0 Type I restriction-modification system, M subunit n=142 Tax=Bacteria RepID=Q2FXD0_STAA8 Length = 579 Score = 294 bits (752), Expect = 5e-78, Method: Composition-based stats. Identities = 119/565 (21%), Positives = 195/565 (34%), Gaps = 118/565 (20%) Query: 3 NNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAE-------------- 48 +L KLW + ++LR G + + N + L+F + E ++ Sbjct: 72 QAELHKKLWSIANDLR-GNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQEA 130 Query: 49 YLPEGYRWDDLKSRIGQ-----EQLQFYRKMLVHLG----------------------ED 81 + E YR D I Q E + M+ + E+ Sbjct: 131 WADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHLATAIRKVETSTLGEE 190 Query: 82 DKKLVQAVFHNVS--------TTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEG 133 + +F ++ I+ ++ N+D L + + D GD YE Sbjct: 191 SENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHS--DMEIDMLGDAYEF 248 Query: 134 LLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPRE--VVQDPAAGTAGFLIEADRYVKS 191 L+ + A AG+++TP+ + K + ++ + V DP G+ L+ + Sbjct: 249 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKDKLRHVYDPTCGSGSLLLRVGK---- 304 Query: 192 QTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLG 251 + G E T LA MN LLHD+ IR +TL Sbjct: 305 --------------ETQVYRYFGQERNNTTYNLARMNMLLHDVRYENFE---IRNDDTLE 347 Query: 252 SDGENLPKAHIVATNPPFGSAA----GTNITRTF-----VHPTSNKQLCFMQHIIETLHP 302 + V NPP+ + F + P S F+QH++ L Sbjct: 348 NPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGYGKLAPKSKADFAFIQHMVHYLDD 407 Query: 303 GGRAAVVVPDNVLFEGGKGTDIRRDLM-DKCHLHTILRLPTGIFYAQGVKTNVLFFTKGT 361 G AVV+P VLF G IRR L+ +K +L ++ LP IFY + T +L F K Sbjct: 408 EGTMAVVLPHGVLFRGAAEGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVFKKC- 466 Query: 362 VANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWS 421 + D+V D + + +D ++ Y T ++S Sbjct: 467 -------RQQDDNVLFIDASNDFEKGKNQNHLSDAQVERIIDTYK------RKATIDKYS 513 Query: 422 FNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPE 481 ++A E+AD++ N N +++ T F E D L Sbjct: 514 YSATLQEIADNDYNLNIPRYVDT-----FEEEAPIDLDQVQQD--------------LKN 554 Query: 482 PDVLAAEAMGELVQALSELDALMRE 506 D AE E+ L EL L E Sbjct: 555 IDKEIAEIEQEINAYLKELGVLKDE 579 >UniRef50_Q8DGT5 Type I site-specific deoxyribonuclease modification subunit n=6 Tax=Bacteria RepID=Q8DGT5_THEEB Length = 543 Score = 294 bits (752), Expect = 6e-78, Method: Composition-based stats. Identities = 108/590 (18%), Positives = 186/590 (31%), Gaps = 128/590 (21%) Query: 1 MNNND---LVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEY-------- 49 MNN D L LW + D LR G ++ ++ + + + LFL+ + +EA Sbjct: 1 MNNQDQIRLGKTLWAIADTLR-GAMNADDFRDYMLAFLFLRYLSDNYEEAAKRELGSDWP 59 Query: 50 ------------------------------------LPEGYRWDDLKSRI---GQEQLQF 70 + Y W + E L Sbjct: 60 QLREDDRRSPLAVWYEENPDDIEPFENMMRRKVHYVVKPEYLWSSIAEMARTQDAELLHT 119 Query: 71 YRKMLVHLG-EDDKKLVQAVFHNVSTTITEPKQITA-----LVSNMDSLDWYNGAHGKSR 124 +K + E Q +F ++ + + L + + + + R Sbjct: 120 LQKGFKFIENESFSSSFQGLFSEINLDSDKLGKTYKQRNERLCTIIGRIAEGLAEFPQER 179 Query: 125 DDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPRE----------VVQDP 174 D GD YE L+ + A + AG+++TP+P+ + ++ ++ V D Sbjct: 180 DLLGDAYEYLIGQFAAGSGKKAGEFYTPQPISSILSAIVSLDAQDPANGKREKLGKVYDF 239 Query: 175 AAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI 234 A G+ L+ R + G E T LA MN LLH + Sbjct: 240 ACGSGSLLLNVGRRMGRYGVGK---------------LYGQEKNITTYNLARMNMLLHGL 284 Query: 235 ---EGNLDHGGAIRLGNTLGSDGENLPK--AHIVATNPPFGSAA--------GTNITRTF 281 E + HG ++ L + K V NPPF Sbjct: 285 KDTEFEIFHGDSLLNEWLLLREENPAKKIEFDAVVANPPFSLRWEPGEELAEDFRFKDYG 344 Query: 282 VHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLP 341 + P S F+ H LH G A+++P VLF G IR+ L+ ++ T++ L Sbjct: 345 LAPKSAADFAFLLHGFHFLHKEGTMAIILPHGVLFRGNVEEKIRKKLLLDGNIDTVIGLA 404 Query: 342 TGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPF 401 +FY+ G+ +L K DDV + ++ EH+ Sbjct: 405 PNLFYSTGIPVCILVLKKCKKF---------DDVLFINAAELYEKGKRQNQLLPEHIDKI 455 Query: 402 ERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSD 461 Y G + EE + D +L +R+ ++ Sbjct: 456 VETYQFRREVKEELDNG----ALFVSRRVSMEEIEKNDFNLNITRYVSTAKSEPEI---- 507 Query: 462 SLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALMRELGASD 511 L + AE ++ QA + ++ELG S+ Sbjct: 508 ----------------DLQQVHQELAELTRKIEQARDRHNEFLKELGLSE 541 >UniRef50_C6A4W7 Type I restriction-modification system methyltransferase subunit n=1 Tax=Thermococcus sibiricus MM 739 RepID=C6A4W7_THESM Length = 498 Score = 293 bits (750), Expect = 1e-77, Method: Composition-based stats. Identities = 120/525 (22%), Positives = 225/525 (42%), Gaps = 64/525 (12%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAE------------ 48 M L +K+ + + +R G++ +YV +L+ +LFLK+ + +E + Sbjct: 1 MERQTLASKIEHIYEIMRAEGLTILDYVEQLSWMLFLKILSDREEERKLEAEVKGEKYVP 60 Query: 49 YLPEGYRWDDLKSRIGQEQLQFYRKMLVHL---------------GEDDKKLVQAVFHNV 93 + E Y + + R G + L+ + + G D+ + +F NV Sbjct: 61 IIKEEYLFHNWPKRFGVDSLKKVKDVKTFYDFITNELWPYLSSLGGTDELNKIGEIFSNV 120 Query: 94 STTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153 + + +P + + N++ + + +YE L E AG+Y+TPR Sbjct: 121 TVKVHDPHNLLEIFQNIEDIH----KDDEDTHIMSQLYEETLMLMGRE-GGAAGEYYTPR 175 Query: 154 PLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFI 213 P+++ ++ ++ P+ + V DP G+ GFL+EA ++ Q +DL + +AF Sbjct: 176 PIVRFMVKVVDPRIGQTVFDPFCGSGGFLVEAYNHMYEQAKTAEDLRK------LDKAFY 229 Query: 214 GLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAA 273 G EL +A MN LLH++ L ++ TNPPFG Sbjct: 230 GQELKTQAYLIANMNTLLHNVNAKLVKTDTFSEDLH-----NPGELYDVILTNPPFGGKI 284 Query: 274 GTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFE-GGKGTDIRRDLMDKC 332 + + + T + +L +QH+++ PGG+ +V+PD VL +R++L++K Sbjct: 285 KESNLQNLIVKTRSTELAALQHVMKKAKPGGKVGIVLPDGVLSNVTKAYVKVRKELLEKN 344 Query: 333 HLHTILRLPTGIFYA------QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYD-LRTNMP 385 ++ I+ LP G+F G KT++LFF +G T +VW Y+ + N Sbjct: 345 NVFAIVSLPQGVFANISPKGGSGPKTSLLFFERGKP---------TREVWYYELIPPNGK 395 Query: 386 SFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEG-EWSFNAEETEVADSEENKNTDQHLAT 444 ++ + P DE L + + L E + +E + V EE K D L+ Sbjct: 396 NYTRANPIKDEDLSDALKKFEAWKKYLETDDEEWKKKALSENSWVVSVEEIKEMDYDLSA 455 Query: 445 SRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEA 489 R +R+ + + I+ L++K+ ++ L E + E Sbjct: 456 ---RNPNRKLMIEYPAPEKIIAGLEEKERKISELLGEIKSILGEK 497 >UniRef50_Q3AQE5 Type I restriction modification enzyme methylase subunit n=10 Tax=Bacteria RepID=Q3AQE5_CHLCH Length = 579 Score = 292 bits (748), Expect = 2e-77, Method: Composition-based stats. Identities = 129/595 (21%), Positives = 223/595 (37%), Gaps = 112/595 (18%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQ-NYVNELASLLFLKMCKETGQE-------------- 46 NN +L +K+ +L + GG+S + ++ LLF+K E + Sbjct: 4 NNPELKSKIEQLWNKFWAGGISNPLTAIEQITYLLFMKRLDELDLKKQADAEWTGEPYIS 63 Query: 47 ---AEYLPEGYR------------------------------WDDLKSRIGQEQLQFYRK 73 E++P YR W + K +E L + Sbjct: 64 RFAGEWIPPEYRAKLSEQDTVEEQQKKQAEATKFAIAKQTLRWSEFKHMQAEEMLLHVQS 123 Query: 74 MLVHLGEDDKKL---VQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKS-----RD 125 + +D N I +P + V +D + + +D Sbjct: 124 KVFPFLKDMNGAESNFTHHMKNAVFIIPKPSLMVEAVKTVDEIFEIMEKDSQEKGQAFQD 183 Query: 126 DFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEA 185 GD+YE LL + A GQ+ TPR +IK + L++PQ + + DPA GTAGFL+ A Sbjct: 184 IQGDVYEMLLSEIAQA--GKNGQFRTPRHIIKLMTELVQPQLAQRIGDPACGTAGFLLGA 241 Query: 186 DRYVKSQTN-------------------------------DLDDLDGDTQDFQIHRAFIG 214 +Y+ +Q + +T + + G Sbjct: 242 YQYIVTQLAIKTSDHFRGVTNMTDRGAHTFQPDEDGFVRTSVASGLTETAQAILQSSLYG 301 Query: 215 LELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPF-GSAA 273 ++ RL LMN ++H I+ I +TL + HIV NPPF GS Sbjct: 302 YDIDSTMVRLGLMNLMMHGID-----EPNIDYKDTLSKSYNEEAEYHIVMANPPFTGSID 356 Query: 274 GTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGG-KGTDIRRDLMDKC 332 +I T+ +L F+++I L GG A V+VP VLF G ++R+ L+++C Sbjct: 357 KGDINENLTLSTTKTELLFVENIYRLLKRGGTACVIVPQGVLFGSGTAFKNLRQLLVERC 416 Query: 333 HLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRT 391 L ++ +P+G+F GV T +L FTK + + T VW YD++++ S + Sbjct: 417 ELKAVITMPSGVFKPYAGVSTAILLFTKVYESKEKVRQPATHQVWFYDMQSDGYSLDDKR 476 Query: 392 PFTD--EHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRK 449 + LQ + + S ++ + + L+ SR+++ Sbjct: 477 TKLEGYGDLQEIVAKFHARNPATN-------SDRTQKCFFVPYADLEAEGYDLSISRYKE 529 Query: 450 FSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALM 504 E + ++ L + A+ A G +V+ L EL ++ Sbjct: 530 DVFEEVHYEAPSAILHQLLAAEVGETAN------AHLANIHGGIVKELLELREMI 578 >UniRef50_UPI000190A448 hypothetical protein Salmonelentericaenterica_35384 n=2 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI000190A448 Length = 306 Score = 292 bits (746), Expect = 3e-77, Method: Composition-based stats. Identities = 260/271 (95%), Positives = 263/271 (97%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLK 60 MNNNDLVAKLWKLCDNLRDGGVSYQNY NELASLLFLKMCKETGQEA+YLPEGYRWDDLK Sbjct: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYANELASLLFLKMCKETGQEADYLPEGYRWDDLK 60 Query: 61 SRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAH 120 SRI QEQLQFYRKMLVHLGED KKLVQAVFHNV TTITEPKQIT LVSNMDSLDWY+G Sbjct: 61 SRIDQEQLQFYRKMLVHLGEDKKKLVQAVFHNVCTTITEPKQITELVSNMDSLDWYSGTR 120 Query: 121 GKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAG 180 GKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAG Sbjct: 121 GKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAG 180 Query: 181 FLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDH 240 FLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDH Sbjct: 181 FLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDH 240 Query: 241 GGAIRLGNTLGSDGENLPKAHIVATNPPFGS 271 GGAIRLGNTLGSDGENLP+A IVATNPPFGS Sbjct: 241 GGAIRLGNTLGSDGENLPQADIVATNPPFGS 271 >UniRef50_C6P389 N-6 DNA methylase n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P389_9PROT Length = 815 Score = 292 bits (746), Expect = 3e-77, Method: Composition-based stats. Identities = 107/469 (22%), Positives = 187/469 (39%), Gaps = 41/469 (8%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYL---------- 50 M + + ++ D L ++ V ++ L K + EAE L Sbjct: 1 MLDAETRRRIDSCRDILVGKVPDPKSQVEQITIALIYKFMDDMDAEAEELGGKRSFFAGE 60 Query: 51 PEGYRWDDLK--SRIGQEQLQFYRKMLVHLGED--DKKLVQAVFHNVSTTITEPKQITAL 106 Y W L + G + L Y + + + E+ L + +F N +P+ + Sbjct: 61 YARYGWAKLMAPNMGGFDVLALYSEAIGKMNENPGIPTLFRDIFKNAYLPYRDPETLRIF 120 Query: 107 VSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQ 166 + ++ + + GD +E LL ++ AGQ+ TPR +I ++ ++ PQ Sbjct: 121 LKEINYFTYDHSEK------LGDAFEYLLSVLGSQ--GDAGQFRTPRHIIDFMVEIVDPQ 172 Query: 167 PREVVQDPAAGTAGFLIEADRYVKSQT--NDLDDLDGDTQDFQIHRAFIGLELVPGTRRL 224 E + DPA GTAGFLI A +++ +L D Q I G ++ P RL Sbjct: 173 KGERILDPACGTAGFLISAWKHILKHNTKKNLGDQLTPEQRAYIAANVHGYDISPDMVRL 232 Query: 225 ALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPP-FGSAAGTNITRTFVH 283 +L+N LH + +TL S+ + A ++ NPP G + F Sbjct: 233 SLVNLYLHGFTD-----PHVVEYDTLTSEEKWNETADVILANPPFMSPKGGIKPHKRFSV 287 Query: 284 PTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTG 343 + ++ F+ +I E L P GRAA++VP+ ++F+ G R ++ K L ++ LP+G Sbjct: 288 QATRSEVLFVDYIAEHLSPNGRAAIIVPEGIIFQSGSAYKQLRQMLVKNSLVAVISLPSG 347 Query: 344 IFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFG-KRTPFTDEHLQPF 401 +F GVKT++L K T +V + + + G +R L Sbjct: 348 VFNPYSGVKTSILLLDKW-------LAKRTSEVLFVKVENDGFNLGAQRRAMAGSGLPDA 400 Query: 402 ERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENK--NTDQHLATSRWR 448 Y H T + + + N D +L+ R+R Sbjct: 401 AAAYLAFRHSQEDVTPTIFDSSQFRNAHVVEKTRLGENGDWNLSGERYR 449 >UniRef50_UPI0001C37526 type I restriction-modification system methyltransferase subunit like protein n=2 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37526 Length = 523 Score = 291 bits (745), Expect = 4e-77, Method: Composition-based stats. Identities = 110/546 (20%), Positives = 195/546 (35%), Gaps = 83/546 (15%) Query: 6 LVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQ-------------------- 45 + LWK D LR G V Y + + SL FLK + + Sbjct: 13 MEEALWKSADKLR-GSVEPAEYKHVVLSLFFLKFASDKFEAQRKMIAEKYGDKFVDNIAF 71 Query: 46 ----EAEYLPEGYRWDDLKSRIGQEQLQ-FYRKMLVHLGEDDKKLVQAVFHNVSTTI-TE 99 YLP RW + Q+ + L + + + L A+ N + + + Sbjct: 72 YTKDNVFYLPAESRWSFIMENAKQDDIALKIDTALFTIEKTNPALKGALPDNYYSRLHID 131 Query: 100 PKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTI 159 ++ +L+ +D ++ D G +YE L K A G G+++TP+ ++ I Sbjct: 132 TSKLASLLDEIDKIN----TDDSENDIIGRIYEYFLGKFALAEGKGKGEFYTPKCIVNLI 187 Query: 160 IHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVP 219 L++P ++ DP G+ G +++ ++V++ + + + G E Sbjct: 188 AELIEPYDG-ILYDPCCGSGGMFVQSIKFVEAHSGNK-----------KKVSIYGQEYTN 235 Query: 220 GTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITR 279 T +LA MN + I NL A NT +D KA + NPPF Sbjct: 236 TTFKLAKMNLAIRGISANLGEMAA----NTFTNDQHKDLKADYIMANPPFNQKEWRAENE 291 Query: 280 ---------TFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMD 330 V PTSN ++ +I+ L G A ++ + L + G IR+ L+D Sbjct: 292 LVDDPRWNGYEVPPTSNANYGWILNIVSKLSQNGVAGFLLANGALSDDGTELKIRKQLID 351 Query: 331 KCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQD-------KNCTDDVWVYDLRTN 383 + I+ LP +FY + + K A + ++ ++ DLR Sbjct: 352 NNLVEAIIILPRSLFYTTDISVTLWILNKNKKARDVEKNGETIHYRDREREILFMDLRQM 411 Query: 384 MPSFGKRT-PFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHL 442 F K+ T+E Y E + E A +E L Sbjct: 412 GSPFEKKYVELTEEDRAKVTATYHAWQQKGY---EETYQDIPEFCYSASYDEVAEKGFTL 468 Query: 443 ATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDA 502 SR+ +F +D++ + E + E ++ ++L Sbjct: 469 VPSRYIEFVN----------------RDENIDFDTKMKGLQAELKELLIEEEKSKADLLE 512 Query: 503 LMRELG 508 + +ELG Sbjct: 513 VFKELG 518 >UniRef50_A0QMK9 Type I restriction-modification system, M subunit n=2 Tax=Mycobacterium avium RepID=A0QMK9_MYCA1 Length = 495 Score = 291 bits (744), Expect = 5e-77, Method: Composition-based stats. Identities = 124/497 (24%), Positives = 205/497 (41%), Gaps = 51/497 (10%) Query: 3 NNDLVAKLWKLCDNLRDG-GVSYQ-NYVNELASLLFLKMCKETGQEAEYLPEG------- 53 L A + D +R G++ + + +LA LLFLK + E E Sbjct: 16 QAKLAAVIKSARDYMRKDAGLNGDLDRIPQLAWLLFLKAFDGLEENREITEENFRPAIEA 75 Query: 54 -YRWDDLKS----RIGQEQLQFYRKMLVHL--------GEDDKKLVQAVFHNVSTTITEP 100 YRW D + R G L F L+ D + ++ AVF + Sbjct: 76 PYRWRDWAADPNGRTGDALLTFVNNELLPYLRGLSGTGSHDPRDVLAAVFKETYNRMLSG 135 Query: 101 KQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTII 160 + +V+ ++ +++ A +YE +L++ + +G+++TPRP+I+ I+ Sbjct: 136 YLLRDVVNKVNEINF---ASSDDIHTMAHLYESMLREMRDAAG-DSGEFYTPRPIIRFIV 191 Query: 161 HLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPG 220 + P+ EV+ DPA GT GFL+EA ++ + L +H G+E P Sbjct: 192 QQVDPRLGEVILDPACGTGGFLVEALEHLSPKVTTTAQL------RALHENLRGIEKKPL 245 Query: 221 TRRLALMNCLLHDI-EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITR 279 L +MN +LH + + N+ G A+ T S + ++ TNPPFG +I Sbjct: 246 PFLLGMMNLVLHGVGQPNITRGNALAESITQIS---KARRVDVILTNPPFGGEEEKSIQA 302 Query: 280 TFVHPTSNKQ--LCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTI 337 F + F+Q +I L GGR +VVP+ +LF GG G I++ L+ +C+LHTI Sbjct: 303 NFPADKQTAETAWLFLQLVIRMLKDGGRCGIVVPNGLLFGGGVGARIKKQLLTECNLHTI 362 Query: 338 LRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLR--TNMPSFGKRTPFT 394 +RLP G F + +N+LFF K T ++W Y++ + K P Sbjct: 363 VRLPDGAFAPYTDIPSNLLFFDKT---------GRTKEIWYYEISPPEGRKKYSKSKPMR 413 Query: 395 DEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREW 454 E + + A + D N N LA + E Sbjct: 414 FEEFADCQVWWSNRVENERAWRVPIADIEANDMYNLDL-RNPNRGDDLAHRPPAELLAEL 472 Query: 455 IRTAKSDSLDISWLKDK 471 I T +S + L+ + Sbjct: 473 IDTERSILALLDGLQRE 489 >UniRef50_C8W944 N-6 DNA methylase n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8W944_ATOPD Length = 506 Score = 291 bits (744), Expect = 6e-77, Method: Composition-based stats. Identities = 113/531 (21%), Positives = 213/531 (40%), Gaps = 64/531 (12%) Query: 1 MNNNDLVAKLWKLCDNLRDGGV-SYQNYVNELASLLFLKMCKETGQEAEYLPE------- 52 M +K+ + + +GG+ + Q + +L L+F++ + E+E + E Sbjct: 1 MITGATKSKVDDVWQRMWEGGITNPQEVITQLTYLMFIRSLDDKELESERMEELGIPQEY 60 Query: 53 ---------GYRWDDLKSRIGQEQLQFYRKMLVHLGE--DDKKLVQAVFHNVSTTITEPK 101 RW +K+ ++ L+ R + + D + + I P+ Sbjct: 61 LFPQTSEGQEMRWCSIKNMAPEKMLEAIRDKVFPFIKTLHDDTPFARSMRDATFGINNPR 120 Query: 102 QITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIH 161 + VS +DSL DD GD+YE +L K + GQ+ TP+ + ++ Sbjct: 121 TLQKAVSGIDSL---MNDFENDMDDLGDLYEYMLSKLSTA--GTNGQFRTPKHIRDMMVA 175 Query: 162 LLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHR----------- 210 ++ P+P E + DPA GTAGFLI A ++++ + DD + Sbjct: 176 MVDPRPGERICDPAMGTAGFLISAADHLRNDSAMKDDDWTVFAGEAAEKDADGNVVAEGR 235 Query: 211 -AFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPF 269 F G E R++ MN +LH I I+L +++ K +V NPPF Sbjct: 236 HQFSGGETDQTMFRISAMNLMLHGIS-----QPDIKLVDSVSKQNTTSDKYDLVLANPPF 290 Query: 270 GSAAGTN---ITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGK--GTDI 324 + T + + + +L F+ + L GGR A +VP+ VLF + Sbjct: 291 TGSVDTEDIAPSLKAICNSKQTELLFVALFLRMLKVGGRCACIVPNGVLFRTNSKAYRQL 350 Query: 325 RRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTN 383 R++L+D L I+ +P+G+F GV T VL FTK TD VW+Y++ + Sbjct: 351 RQELVDNQQLRAIIYMPSGVFKPYSGVSTAVLVFTKTNAG-------GTDKVWLYNMEGD 403 Query: 384 MPSFGKRTPFTDEH--LQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQH 441 + + D H + + E +++ + ++ + D Sbjct: 404 GYTLDDKRDIDDAHNDVPDILERWAHLES-------EEKRDRKQKSFLVSKQDIIDNDYD 456 Query: 442 LATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGE 492 + +++ + E I ++ + ++ L + + A L E + + + Sbjct: 457 FSFNKYVETEYERIEYPPTEQI-VAELDELNKEMATGLAELKKVLGGGLDD 506 >UniRef50_Q4A128 Putative type I restriction-modification system methyltransferase subunit n=5 Tax=Bacteria RepID=Q4A128_STAS1 Length = 518 Score = 290 bits (741), Expect = 1e-76, Method: Composition-based stats. Identities = 110/538 (20%), Positives = 196/538 (36%), Gaps = 102/538 (18%) Query: 3 NNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQ--------------EAE 48 +L +LW + ++LR G + + N + L+F + E + E Sbjct: 11 QAELHKRLWSIANDLR-GNMDASEFRNYILGLIFYRFLSEKAETEVAEALSGEDLTYEEA 69 Query: 49 YLPEGYRWDDLKSRIGQE-----------------------QLQFYRKMLVH-----LGE 80 + E YR +DLK + + ++ + + LG+ Sbjct: 70 WEDEEYR-EDLKDELIENVGYYIEPQDLFSSMVTEIENQRFDIEHLVQAIRKVETSTLGQ 128 Query: 81 DDKKLVQAVFHNVSTTITEPKQ----ITALVSNM--DSLDWYNGAHGKSRDDFGDMYEGL 134 + ++ +F ++ + T TAL+S + + D D GD YE L Sbjct: 129 NSEEDFIGLFSDMDLSSTRLGNTVKERTALISKVMVNLGDLPFVHSDMEIDMLGDAYEFL 188 Query: 135 LQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREV--VQDPAAGTAGFLIEADRYVKSQ 192 + + A AG+++TP+ + K + ++ ++ V DP G+ L+ + Sbjct: 189 IGRFAANAGKKAGEFYTPQQVSKILAQIVTLGKDKLRNVYDPTCGSGSLLLRVGK----- 243 Query: 193 TNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGS 252 + G E T LA MN LLHD+ I+ +TL + Sbjct: 244 -------------ETTVYRYNGQERNNTTYNLARMNMLLHDVRFE---NFDIQNDDTLEN 287 Query: 253 DGENLPKAHIVATNPPFGSAA-------GTNITRTF--VHPTSNKQLCFMQHIIETLHPG 303 K V NPP+ + + + P S F+QH++ L Sbjct: 288 PAFEGEKFDAVVANPPYSAKWSADSKFNDDERFSNYGKLAPKSKADFAFIQHMVHYLDDE 347 Query: 304 GRAAVVVPDNVLFEGGKGTDIRRDLM-DKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTV 362 G AVV+P VLF G IR+ L+ +K +L ++ LP IFY + T VL F K Sbjct: 348 GTMAVVLPHGVLFRGAAEGVIRKYLIEEKNYLDAVIGLPANIFYGTSIPTCVLVFKKCRE 407 Query: 363 ANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSF 422 A+ DV D + TDE ++ Y + ++S+ Sbjct: 408 ADQ--------DVLFIDASNEFEKGKNQNHLTDEQVEKIIATYK------NREAVDKYSY 453 Query: 423 NAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLP 480 A E+ +++ N N +++ T F E D++ + D+ + + Sbjct: 454 AANLKEIDENDYNLNIPRYVDT-----FEEEEPVDLDKVQQDLNQIDDEIAQVEKEID 506 >UniRef50_B3EE94 N-6 DNA methylase n=3 Tax=Bacteria RepID=B3EE94_CHLL2 Length = 846 Score = 290 bits (741), Expect = 1e-76, Method: Composition-based stats. Identities = 111/469 (23%), Positives = 189/469 (40%), Gaps = 41/469 (8%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEG------- 53 M + D ++ D L ++ V ++ L K + E+E L Sbjct: 1 MLDTDTKRRIDTARDILVGKVPDPKSQVEQITIALIYKFMDDMDAESEELGGKRKFFTGN 60 Query: 54 ---YRWDDL--KSRIGQEQLQFYRKMLVHLGED--DKKLVQAVFHNVSTTITEPKQITAL 106 Y W +S G E L Y + + + E+ L + +F N +P+ + A Sbjct: 61 FVRYGWAKFMDRSLGGHEMLGLYSEGIAKMPENPGIPALFRDIFKNAYLPYRDPETLKAF 120 Query: 107 VSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQ 166 + +D + + GD +E LL ++ AGQ+ TPR +I ++ +L PQ Sbjct: 121 LKIIDEFTYDHSER------LGDAFEYLLSVLGSQ--GDAGQFRTPRHIIDFMVEILVPQ 172 Query: 167 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDF--QIHRAFIGLELVPGTRRL 224 E + DPA GTAGFLI A +++ D D T D ++ R F G ++ P RL Sbjct: 173 KNETILDPACGTAGFLISAYKHILRTNTDTDGHSTLTPDEKGRLARNFKGYDISPDMVRL 232 Query: 225 ALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPP-FGSAAGTNITRTFVH 283 +L+N LH I +TL S+ A ++ NPP G + F Sbjct: 233 SLVNLYLHGFTD-----PHIFEYDTLSSEERWNEFADVILANPPFMSPKGGIKPHKRFSI 287 Query: 284 PTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGG-KGTDIRRDLMDKCHLHTILRLPT 342 ++ F+ ++ E L P GRA ++VP+ ++F+ ++R+ L++ L ++ LP Sbjct: 288 QAKRSEVLFVDYMAEHLTPAGRAGIIVPEGIIFQSQMAYKELRKMLVEN-SLVAVISLPA 346 Query: 343 GIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFG-KRTPFTDEHLQP 400 G F GVKT++L K +D + + + + G +R L Sbjct: 347 GCFNPYSGVKTSILILDK-------SLARQSDTIAFFKVENDGFGLGAQRRAIEKNDLPQ 399 Query: 401 FERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRK 449 + L R E V + N D +L+ R+R+ Sbjct: 400 VQAELAAHLQALRSRAATESHAITTGLIVPKEKIATNGDYNLSGERYRE 448 >UniRef50_B4VZI3 N-6 DNA Methylase family n=2 Tax=Bacteria RepID=B4VZI3_9CYAN Length = 513 Score = 289 bits (740), Expect = 2e-76, Method: Composition-based stats. Identities = 120/555 (21%), Positives = 212/555 (38%), Gaps = 85/555 (15%) Query: 1 MNNNDLVAKLWKLCDNLRDGGV--SYQNYVNELASLLFLKMCKETGQEAEYLPE------ 52 M+ L +W+ CD LR YV L+ LLFLK GQE + E Sbjct: 1 MSREQLTNDIWRACDILRRDNNCGGVMEYVEHLSWLLFLKFLD--GQEDAFEQEAKSANR 58 Query: 53 --------GYRWDDLKSR-----------------IGQEQLQFYRKMLVHL-----GEDD 82 YRW + ++ + ++F R L+ G + Sbjct: 59 KYTRVISRQYRWSNWVTKALGKKGGKKGRRTIPAWDDHQLMEFVRGELIPHLASLSGSPE 118 Query: 83 KKLVQAVFHNVSTTITE-PKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANE 141 ++++ +F + + I + P + ++ +D +D N +YE LL++ +E Sbjct: 119 REVIAGIFRDRNVIICDSPDNLKDVLKIVDQIDLTN---PDDIYTVSHIYEDLLKRLGSE 175 Query: 142 TKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDG 201 AG+++TPR +I+ ++ ++ PQ E V DPA GT GFL+EA + + Q D Sbjct: 176 -NKMAGEFYTPRSVIRFMVEVIDPQIGETVYDPACGTCGFLLEAFLHTQKQEKTAKD--- 231 Query: 202 DTQDFQIHRAFIGLELVPGTRRLALMNCLLHD-IEGNLDHGGAIRLGNTLGSDGENLPKA 260 ++ F+G E P L MN +LH + ++ + + G Sbjct: 232 --REILQRHTFVGQEKKPLPALLGTMNMVLHGVLVPDIRRRNTLAE-DIRDGSGLFDETF 288 Query: 261 HIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHP--GGRAAVVVPDNVLFEG 318 ++ TNPPFG I + F + +L F+QH+++ L P G R +VVP+ LF G Sbjct: 289 DVILTNPPFGGKENARIQKNFPVKANATELLFLQHVMKKLKPKQGARCGIVVPEGTLFRG 348 Query: 319 GKGTDIRRDLMDKCHLHTILRLPTGIFYAQG-VKTNVLFFTKGTVANPNQDKNCTDDVWV 377 G ++++L+ +L ++ LP G F VK +LFF +G + Sbjct: 349 GAFATVKKELLHDFNLFMVVSLPPGTFAPYSDVKAALLFFERGEQQKEVLYQE------- 401 Query: 378 YDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKN 437 L ++ F K +DEH +V+ + + + + D + Sbjct: 402 IALPDDLKKFSKVNSISDEHFAEARQVWQQMKDYHLGKANRP--TMTANSWLEDVKGLVK 459 Query: 438 TDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQAL 497 + +E + E + + EL L Sbjct: 460 NEYDFTAKNSIYLKKEKLPHP---------------------SEITAILLKDQRELQIRL 498 Query: 498 SELDALMRELGASDE 512 L ++ + SD+ Sbjct: 499 ERLHKMLNDRIKSDD 513 >UniRef50_C9KRW2 Type I restriction-modification system, M subunit n=5 Tax=Bacteroides RepID=C9KRW2_9BACE Length = 507 Score = 289 bits (740), Expect = 2e-76, Method: Composition-based stats. Identities = 83/507 (16%), Positives = 192/507 (37%), Gaps = 77/507 (15%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEY----------- 49 + ++L + LW +LR G + Y + LLF K + E Sbjct: 15 ITLDELKSFLWAAATHLR-GQIDAAGYKEYIFPLLFFKRISDVYDEQFEGFVCEGGVEYA 73 Query: 50 ----------LPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKL---------VQAVF 90 +P+G W D++ + + + + + + ++ +F Sbjct: 74 GMQVEDLPIRIPDGAHWRDVREVT-ENVGNKLVEAFIAIEQANPAKEMDGRKIGGLEGIF 132 Query: 91 HNVSTTITEPKQITALVSNM--DSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQ 148 + K +++++ D + D+ G YE L+ K A++ + A + Sbjct: 133 GPKDGWTNKAKMPDNIITSLIEDFSKYTLSLKVCPADEMGQAYEYLVGKFADDAGNTAQE 192 Query: 149 YFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQI 208 ++T R +++ + +L+PQP E + DP G+ G L++ Y++++ + + Sbjct: 193 FYTNRTVVQLMAEILQPQPNESIYDPTCGSGGMLVKCLDYLRNKGAEWQSV--------- 243 Query: 209 HRAFIGLELVPGTRRLALMNCLLHDI-EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNP 267 G E+ T +A MN L+ I + ++ + L DG +L K IV NP Sbjct: 244 --QVFGQEVNGLTSSIARMNLYLNGIEDFSIACADTLENPAFL--DGSHLRKFDIVLANP 299 Query: 268 PFGSAAGTNIT-------RTFV--HPTSNKQLCFMQHIIETL-HPGGRAAVVVPDNVLFE 317 P+ R F+ P F+QHI+ ++ GR A+++P VL Sbjct: 300 PYSIKEWNREKFMNDKWGRNFLGTPPQGRADYAFIQHILASMDEKTGRCAILLPHGVLNR 359 Query: 318 GGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWV 377 + +RR L+++ + +++ + +F+ ++ ++ + ++ V Sbjct: 360 M-EEEIMRRKLIEEDLVDSVISIGKNLFFNSPMEACIMLCSSKKPSD------RIKQVLF 412 Query: 378 YDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKN 437 + + T+EH++ +Y + + + + D++ Sbjct: 413 IRATDLVERKNGESYLTEEHVEEIVSLYRGN------------TNVDNRSCIVDTKTISQ 460 Query: 438 TDQHLATSRWRKFSREWIRTAKSDSLD 464 + ++ + K ++ S+ ++ Sbjct: 461 NEYSISPKLYVKQTQTENILKFSEQIE 487 >UniRef50_D2MJZ6 Type I restriction-modification system, M subunit n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MJZ6_9BACT Length = 545 Score = 289 bits (739), Expect = 2e-76, Method: Composition-based stats. Identities = 92/550 (16%), Positives = 182/550 (33%), Gaps = 92/550 (16%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA-------------- 47 N+ L + +W ++R G Y + + L+F K + + Sbjct: 21 NDKSLESWIWDAACSIR-GAKDAPKYKDYILPLIFAKRLCDVFDDELNRIATEVGSREKA 79 Query: 48 --------------------EYLP------EGYRWDDLKSRIGQEQLQFYRKMLVHLGED 81 YLP E W ++ + + + + + Sbjct: 80 FQLVVADWRRVADKKKAMVRFYLPLMPKDTEQPVWSVIRKLS-DKIGEGVTTHMREIARE 138 Query: 82 DKKLVQAVFHNVSTT-------ITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGL 134 + L++ + V + +++ L+ + + G D G YE L Sbjct: 139 NP-LLKGIIDRVDFNATTHGQRDLDDDRLSNLIEAISTKRL--GLADVEADIIGKSYEYL 195 Query: 135 LQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTN 194 ++K A + AG+++TP + + + +L P P + DP G+ G LI+ + Sbjct: 196 IRKFAEGSGQSAGEFYTPGEVGEIMARVLAPDPGMEIYDPTCGSGGLLIKC----ELAME 251 Query: 195 DLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDG 254 T+D + G E VP T +A MN ++HD+EG ++ G + Sbjct: 252 AKVKAAKKTKDAPLPLKLFGQEYVPETWAMANMNMIIHDMEGQIEIGDTFKNPRFRAEKS 311 Query: 255 ENLPKAHIVATNPPFGS------AAGTNITRTFV-----HPTSNKQLCFMQHIIETLHPG 303 L V NP + + F S+ ++QH+ +L+ Sbjct: 312 GKLRTFDRVVANPMWNQDSYIEADYDNDELDRFPAGAGFPGKSSADWGWVQHMHASLNDK 371 Query: 304 GRAAVVVPDNVLFEG------GKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFF 357 GRAAVV+ G K +R+ +D+ + ++L LP +FY VLF Sbjct: 372 GRAAVVLDTGAASRGSGNAGTNKEKTVRQWFVDQDLIESVLYLPENLFYNTTAPGIVLFL 431 Query: 358 TKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTE 417 K + +++ + + E + + + Sbjct: 432 NKAKP------RARQGKIFLVNASQVFEKGDPKNFIPPEGIARIAGILIKWKEEE----- 480 Query: 418 GEWSFNAEETEVADSEENKNTDQHLATSRWRKF-SREWIRTAKSDSLDISWLKDKDSIDA 476 + + + E K D +++ SR+ E R D+ ++++ Sbjct: 481 -------KLSRIVAHAELKKNDYNISPSRYIHTGEAEAYRPLAEIVADLDAIEEEAKETD 533 Query: 477 DSLPEPDVLA 486 +L E Sbjct: 534 RALREILERI 543 >UniRef50_B7KF58 N-6 DNA methylase n=4 Tax=Bacteria RepID=B7KF58_CYAP7 Length = 509 Score = 289 bits (739), Expect = 2e-76, Method: Composition-based stats. Identities = 119/534 (22%), Positives = 207/534 (38%), Gaps = 71/534 (13%) Query: 1 MNNNDLVAKLWKLCDNLRDGGV--SYQNYVNELASLLFLKMCKE-----------TGQEA 47 M+ L +W+ CD LR Y+ LA LLFLK E ++ Sbjct: 1 MSKEQLTNDIWRACDILRRDNNCGGIMEYIEHLAWLLFLKFLDEQEDTFALEAELRNEKY 60 Query: 48 EYLPE-GYRWDDLKSR-----------------IGQEQLQFYRKMLVHL-----GEDDKK 84 Y+ E YRW + ++ + F ++ L+ G +++ Sbjct: 61 HYMIEGEYRWSNWVTKGLGKKKKQSDKRNTPEWDADTLMGFVKEKLIPYLASLSGSPERE 120 Query: 85 LVQAVFHNVSTTITEP-KQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETK 143 ++ +F + + + + ++ +D +D+ N YE LLQ+ +E Sbjct: 121 VIAGIFGGRTVILCDSVYNLKDVLEIVDRIDFSNS---DDIYTVSHTYENLLQRLGSE-N 176 Query: 144 SGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDT 203 AG+++TPRP+I+ ++ ++ P+ E V DPA GT GFL+ A Y+K + D Sbjct: 177 KMAGEFYTPRPVIRFMVEVIDPKIGETVYDPACGTCGFLVAAYEYMKQWEQTIRD----- 231 Query: 204 QDFQIHRAFIGLELVPGTRRLALMNCLLHD-IEGNLDHGGAIRLGNTLGSDGENLPKAHI 262 +D F G E P L MN +LH + ++ + + K I Sbjct: 232 RDILQRHTFFGQEKKPLPALLGTMNMVLHGVLVPDIQRKNTLEE-----DTRTAIKKYDI 286 Query: 263 VATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLH--PGGRAAVVVPDNVLFEGGK 320 + TNPPFG I + F + +L F++HII+ L R +VVP+ LF G Sbjct: 287 ILTNPPFGGKENKQIQKNFPVSANATELLFLEHIIKKLKTDDNARCGMVVPEGTLFRSGA 346 Query: 321 GTDIRRDLMDKCHLHTILRLPTGIFYAQG-VKTNVLFFTKGTVANPNQDKNCTDDVWVYD 379 ++ L++ +L ++ LP G F VK +LFF +G D+V + Sbjct: 347 FGTVKEWLLNDFNLVMVVSLPPGTFAPYSDVKAALLFFERGKQG---------DEVLYQE 397 Query: 380 --LRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKN 437 L + F K P D H + ++ + + G+ E + +E+ Sbjct: 398 VVLPEELKKFSKGNPIDDIHFRQVREIWQQMKAYQQGK--GKKPEITEFSWFEKTEDLIK 455 Query: 438 TDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMG 491 LA RE + S+ + + + +L E + Sbjct: 456 RGFDLAAKNPTTTEREKL---PEPSVLLDRIIKNNEKLHQNLLSLKQKLDEGVK 506 >UniRef50_A4CI92 Type I restriction-modification system DNA methylase n=3 Tax=Bacteroidetes RepID=A4CI92_9FLAO Length = 531 Score = 289 bits (739), Expect = 2e-76, Method: Composition-based stats. Identities = 92/548 (16%), Positives = 181/548 (33%), Gaps = 84/548 (15%) Query: 5 DLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETG-------------------- 44 + +LW + LR G V+ Y + + L+FLK E Sbjct: 9 NFEKELWNAANELR-GAVAENQYKDYVLPLIFLKHMSERYEMRRDELMDAFEDEASNYYG 67 Query: 45 ------------------QEAEYLPEGYRWDDLKSRIG--------QEQLQFYRKMLVHL 78 + +P+ W+ L+ E + L Sbjct: 68 LSEDDRNYVLEDPDEYLSKNTYIIPKKATWEFLQDNAERDNIKVLVDEAFDTLDETLGAF 127 Query: 79 GEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKN 138 + K ++ +F T + + L+S+ + D G +YE + K Sbjct: 128 RPELKGILPRIFVKSQLTSRQVGGLINLLSH----PKLSVKENPESDILGRVYEYYIGKF 183 Query: 139 ANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDD 198 A SGAGQ+FTP +++ ++ +++P + D A G+ G +++ +++++ D Sbjct: 184 AIAEGSGAGQFFTPGSIVRLMVEMIEPYKG-KIFDAACGSGGMFVQSLKFLEAHGGDK-- 240 Query: 199 LDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLP 258 + + G E GT RL MN L D+ ++ G ++ D Sbjct: 241 ---------RNISIYGQERYSGTLRLCKMNLALRDLSFDVRLGDSLLQ------DKFPDL 285 Query: 259 KAHIVATNPPFGSAAGTNIT-----------RTFVHPTSNKQLCFMQHIIETLHPGGRAA 307 +A + NPPF + + N +MQ L G AA Sbjct: 286 EADYILVNPPFNVSQWHPEDLPDKDPRLFGPKEEFTTDGNANYMWMQTFWSHLSNTGTAA 345 Query: 308 VVVPDNVLFEGGK-GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPN 366 VV+ + + G K ++R+ ++D+ + I+RLP +F G+ + +K Sbjct: 346 VVMANGAMTTGNKGEKNVRQHMVDEGMIDAIVRLPDKLFLTTGIPACIFILSKNRDGKDG 405 Query: 367 QDKNCTDDVWVYDLRTNMPSFGKR-TPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAE 425 + +++ D+ +R F + L Y + + + + Sbjct: 406 VHRERKEEILFIDMSKMGRMESRRLRVFDEADLIKAVEAYHAWRNLPN-KDNAPYENQDG 464 Query: 426 ETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVL 485 A EE + D L + E ++ LK + + Sbjct: 465 FCYAATLEEVQKQDYKLTPGIYVGIEEEE-DDGIPFEEKLAILKAQLKEQFREGEDLKRK 523 Query: 486 AAEAMGEL 493 + + Sbjct: 524 ILDNFDQF 531 >UniRef50_Q60297 Putative type I restriction enzyme MjaXP M protein n=4 Tax=Euryarchaeota RepID=T1MH_METJA Length = 558 Score = 288 bits (738), Expect = 2e-76, Method: Composition-based stats. Identities = 100/549 (18%), Positives = 187/549 (34%), Gaps = 91/549 (16%) Query: 3 NNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLK----MCKETGQEAE---------- 48 + +LWK+ D LR + Y + L+FL+ E +E E Sbjct: 45 TPEFENQLWKVADKLRK-KMEVHQYKYVVLGLIFLRALTCRFYERRKEIEEELSNPNSEL 103 Query: 49 ------------------------YLPEGYRWDDLKSRI-GQEQLQFYRKMLVHLGEDDK 83 YLP+ RWD + + + L E Sbjct: 104 YTEDPELRKMILEDEDFYLSEGVLYLPKETRWDYFVENVMSPNIGEIIDTAIEILEEKYP 163 Query: 84 KLVQAVFHNVS-TTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANET 142 ++ V + + + + L++ + + G + +D FG +YE L K Sbjct: 164 DRLKDVIPKIYAQSPLDNHDYSYLINKFSEISF--GKEHRVKDVFGRIYEYFLGKFTEVE 221 Query: 143 KSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGD 202 G+++TPR L K I+ +L + + DPA G+ GF + A ++ + D+++L Sbjct: 222 GKLGGKFYTPRSLTKLIVDVLDVK-GGSIFDPACGSGGFFVSALEKLEREGIDINEL--- 277 Query: 203 TQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHI 262 + G + P RL MN ++ EG++ R+ ++ D Sbjct: 278 --------SIYGQDSDPMAYRLTKMNLIIRGAEGDI------RIDDSYHDDKFMDMTFDY 323 Query: 263 VATNPPFGSAAGT-------------NITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVV 309 V NPPF + + V P N ++ H I P G+A V Sbjct: 324 VVANPPFNDSEWDANRIKPDDPRLRIGNKKVPVPPNGNANYMWILHFIYHTAPNGKAGFV 383 Query: 310 VPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDK 369 + + L G +IR+ +++ ++ I+ P +FY + ++ F K Sbjct: 384 MANGALSAGNVEGEIRKAIIENDLVYGIVACPPKLFYNVSLPVSLWFIRKEKPDYMK--- 440 Query: 370 NCTDDVWVYDLRTNMPSF-GKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETE 428 V + + ++ T+EH++ + G E + Sbjct: 441 ---GKVLFINAKNLYKQISRRQNILTEEHIKKIVDKFRMFESGEDEDKINEL----GFAK 493 Query: 429 VADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAE 488 VA +E L R+ E D + + S + L + + Sbjct: 494 VATIDEIAKNGYVLTPGRYVGVKIED------DGIPFEVKMKEYSEELKKLLDEEEKLRN 547 Query: 489 AMGELVQAL 497 + E++ AL Sbjct: 548 KVKEILDAL 556 >UniRef50_B5ZAK9 Type I restriction enzyme n=13 Tax=Mycoplasmataceae RepID=B5ZAK9_UREU1 Length = 510 Score = 288 bits (738), Expect = 3e-76, Method: Composition-based stats. Identities = 102/536 (19%), Positives = 202/536 (37%), Gaps = 74/536 (13%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAE------------ 48 +N +D+ LW CD LR G +S + Y++ + ++FLK + A Sbjct: 9 INIDDIANDLWASCDELR-GNISSEQYMHIIIGIIFLKTISDKYNYAINALKDKYKDKFN 67 Query: 49 ------------------YLPEGYRWDDLKSRIGQEQL-QFYRKMLVHLGEDDKKLVQAV 89 +P+ W+ + + + + + + + +L Sbjct: 68 DSIKNDSDLISEFFPLGLIVPDEAHWNYISGFTTDSSIGEKIDQAFLKIENQNPRLKGLF 127 Query: 90 FHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQY 149 ++ + ++ +V + D+ + D G +YE L + + G++ Sbjct: 128 NKQYNSPELDKTRLGNVVRKFNDYDF----SQFNEDLVGRIYEYFLGEFFRKQGQKGGEF 183 Query: 150 FTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIH 209 +TP+ +++ +I +L P + DPA GT G ++A Y+ Q D + L Sbjct: 184 YTPKTVVELLIDILDPNDNIKMYDPACGTGGMFVQARNYLHEQNKDYNKLV--------- 234 Query: 210 RAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPF 269 G E T +LA +N LL+ N H G +T D K I+ NPPF Sbjct: 235 --IYGQEYQSQTWKLAKINLLLNGFNENDIHLGRGSE-DTFKEDLHKGQKFDIIVANPPF 291 Query: 270 GSAAG-------TNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGT 322 + P +N ++ HII L+ G+A V++ + L K Sbjct: 292 NLKKWYREELLNDERFSWGMPPENNANYAWLLHIISKLNSRGKAGVILANGSLSSSNKEE 351 Query: 323 D-IRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLR 381 +R+ ++++ + I+ LP +FY + ++ FF K ++V + Sbjct: 352 SLLRKKMIEENIVDAIISLPDKLFYTTQISASIWFFNKNKE---------NENVLFIEAS 402 Query: 382 TNMP-SFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQ 440 K T +++ + VY + G E + +E D Sbjct: 403 KMGELKTKKLRFLTKDNISKIKNVYDKHEQG-------EDVNVVGFAKTCTIDEIIENDY 455 Query: 441 HLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQA 496 L R+ F +E I + + +I L+++ S+ D L + A E++ ++++ Sbjct: 456 SLVPGRYVGFEQEVIDHEQL-NHEIKGLQEELSVLFDELEDLIPQAKESIKKVLEK 510 >UniRef50_C2E8R1 Site-specific DNA-methyltransferase n=15 Tax=Firmicutes RepID=C2E8R1_9LACO Length = 556 Score = 288 bits (736), Expect = 5e-76, Method: Composition-based stats. Identities = 100/607 (16%), Positives = 198/607 (32%), Gaps = 135/607 (22%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKE---TGQEAEYLPE------ 52 D+ K+W + + LR G + Y + + +F + E Q P+ Sbjct: 3 TAEDIKNKIWAMANELR-GNMDASEYRDYILGFMFYRFLSEHQLNWQSENEFPDLAGKKL 61 Query: 53 ---------------------------------GYRWDDLKSRIGQEQLQ--FYRKMLVH 77 + W + R+ +++M Sbjct: 62 EKINQRYAKEAIGDDLTEYLKDIADALGYAIEPKFTWISIVERVNDRSFAPSEFQEMFDK 121 Query: 78 LGEDDK------KLVQAVFHNVSTTITE-----PKQITALVSNMDSLDWYNGAHGKSRDD 126 + K VF +++ + + L+ ++ ++ D Sbjct: 122 FANNAKLNPNAVNDFTGVFSDINLGNSRLGDSTNVRAKTLLDIVNLVNEIEYKDEAGHDI 181 Query: 127 FGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVV-----QDPAAGTAGF 181 GD+YE L+ + A G++FTP + + ++ + D A G+ Sbjct: 182 LGDIYEYLIAEFAGNAGKKGGEFFTPHQVSLVLAKIIAANMDPEIEHPEVYDFACGSGSL 241 Query: 182 LIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHG 241 L+ + ++ + + G EL +A MN ++H ++ + Sbjct: 242 LLTVEDELQ----------IPGSQKRRRVRYYGQELNTTNYNMARMNLMMHGVDYQMM-- 289 Query: 242 GAIRLGNTLGSDG---------ENLPKAHIVATNPPFGSAAGT--------NITRTFVHP 284 +R +TL +D ++ V NPP+ S + P Sbjct: 290 -DLRNADTLENDWPDGVGNDNIDHPHFFDAVVANPPYSSRWDNSANKIKDARFKDYGLAP 348 Query: 285 TSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGI 344 + F+ H + L+ G A+V+P VLF G IR+ L++K + I+ LP G+ Sbjct: 349 KTKADYAFLLHGLYHLNSRGTMAIVLPHGVLFRGNAEGKIRKALLEKNQIDAIIGLPAGL 408 Query: 345 FYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTN--MPSFGKRTPFTDEHLQPFE 402 F++ G+ T ++ K DV D K+ +E + Sbjct: 409 FFSTGIPTIIMVLKKNKT---------NKDVLFIDASGEDHYEKIKKQNFLREEDINLII 459 Query: 403 RVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDS 462 Y + + VA +E K D +L R+ Sbjct: 460 DTYKKRED------------VDKYAHVASIDEIKENDYNLNIPRY--------------- 492 Query: 463 LDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALMRELGASDEADLQ-RQLLE 521 + +++ ID L E ++ E+ ++ L ++M+EL + D ++ + L Sbjct: 493 --VDTFEEEPPID---LGELTQEISQTDQEIAESEQNLLSMMKELTSDDPKMMEDLKTLI 547 Query: 522 EAFGGVK 528 F G K Sbjct: 548 SLFEGEK 554 >UniRef50_Q47GH6 N-6 DNA methylase n=13 Tax=cellular organisms RepID=Q47GH6_DECAR Length = 529 Score = 287 bits (735), Expect = 5e-76, Method: Composition-based stats. Identities = 103/542 (19%), Positives = 180/542 (33%), Gaps = 78/542 (14%) Query: 1 MNNNDLVAKLWKLCDNLR-DGGVSYQNYVNELASLLFLKMCKETGQEAE----------- 48 +N DL ++LW D L + G+ + N + L+FL+ ++ EAE Sbjct: 17 INLQDLESRLWSAADQLWANTGLKPSEFSNPVLGLIFLRYAEKRFHEAEAKLVAGGLEVS 76 Query: 49 -------------YLPEGYRWDDLKSRI-GQEQLQFYRKMLVHLGEDDKKLVQAVFHNVS 94 YLPE R+ L G + + + + + E D ++ V Sbjct: 77 DIEKFDYQAEGALYLPETARFTYLLDLAEGHDIGKAINEAMAAV-EADNDELKGVLPRSY 135 Query: 95 TTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRP 154 + + L NG D FG +YE L K A G ++TP Sbjct: 136 GKVENRVLVEL-------LRLLNGLGEIEGDAFGKIYEYFLGKFALAEGQKGGVFYTPTS 188 Query: 155 LIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIG 214 ++K I+ +++P + + DPA G+ G +++ +V + G Sbjct: 189 IVKLIVEIIEPFHGQ-IFDPACGSGGMFVQSAMFVGRHKKRAAE----------ELTVFG 237 Query: 215 LELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENL-PKAHIVATNPPFGSA- 272 E T +LA MN +H + G++ R NT D + V NPPF + Sbjct: 238 TEKSNDTVKLAKMNLAVHGLSGDV------RESNTYYEDPHKAVGRFDFVMANPPFNVSG 291 Query: 273 ------AGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRR 326 V T N ++Q L+ GRA V+ ++ G +IR+ Sbjct: 292 VDKERIKDDPRFPFGVPTTDNANYLWIQLFYSALNNTGRAGFVMANSAGDARGAELEIRK 351 Query: 327 DLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPS 386 L+ L I+ + FY + + FF K D V D R Sbjct: 352 KLILSGGLEAIVSVGPNFFYTVTLPCTLWFFDKTKAKRE-----RKDKVLFIDARGYYRQ 406 Query: 387 FGKR-TPFTDEHLQ---PFERVY---------GEDPHGLSPRTEGEWSFNAEETEVADSE 433 + F E ++ R++ G EG + +VA Sbjct: 407 VSRAIRDFLPEQVEFLSNIVRLWRGEAVETEAGSGEMMTEQFPEGAYRDIVGVCKVATLA 466 Query: 434 ENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGEL 493 + + L R+ + I+ L ++ + + + + L Sbjct: 467 DIEAQGWSLNPGRYVGVVHHSAEDFDFEE-RIASLTEEFATLNNEASDLSQKIEMDLQNL 525 Query: 494 VQ 495 + Sbjct: 526 LS 527 >UniRef50_A9B990 N-6 DNA methylase n=2 Tax=Chloroflexi (class) RepID=A9B990_HERA2 Length = 571 Score = 287 bits (734), Expect = 9e-76, Method: Composition-based stats. Identities = 142/570 (24%), Positives = 235/570 (41%), Gaps = 82/570 (14%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQ--NYVNELASLLFLKMCKETGQ---------EAEYL 50 N L + +W+ CD LR Y LA LLFL+ + E Y Sbjct: 11 TNETLRSNMWRACDILRRDNNVGGVMQYTEHLAWLLFLRFMDMEEKRRVDLALLNEMPYH 70 Query: 51 P---EGYRWDDLKS------RIGQEQLQFYRKMLVH-----LGEDDKKLVQAVFHNVSTT 96 P WD S R E +QF R L+ G + + +F + ST Sbjct: 71 PVLHGDLSWDFWASPEALERRSAPELIQFVRGRLLPGLATLTGSSLARTIAGIFSDESTG 130 Query: 97 ITE----------PKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGA 146 + ++ ++S+ + + + YE LL++ ++E A Sbjct: 131 DQNVVRAVPVCASGYNLKDVLEIINSIHFELDSDLFT---ISLFYEDLLERMSSE-NRTA 186 Query: 147 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDF 206 G++ TPR +I+ ++ L+ PQ E V DPA G+AGFL++A +++ + + Sbjct: 187 GEFHTPRAVIRFMVELMAPQIGETVYDPAYGSAGFLVQAFLFMQPFARTI-----EEHTS 241 Query: 207 QIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGS--DGENLPKAHIVA 264 + F G+E + L MN +LH + + NTL G++ + +V Sbjct: 242 LHEQTFFGIEKKALSALLGTMNMVLHGVNA-----PKLLRANTLEESMQGDSGQRYDVVL 296 Query: 265 TNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLH--PGGRAAVVVPDNVLFEGGKGT 322 TNPPFG G +I + F + +L F+QHII+ L P RAA+VVP+ LF G Sbjct: 297 TNPPFGGTEGAHIQQNFAVKANATELLFLQHIIKKLKRTPNARAAIVVPEGTLFRSGAFA 356 Query: 323 DIRRDLMDKCHLHTILRLPTGIFYAQG-VKTNVLFFTKGTVANPNQDKNCTDDVWVYD-- 379 ++++DL+ + HL + LP G F VKT +LF K + + ++ W Y+ Sbjct: 357 EVKQDLLQQFHLFAVFSLPPGTFAPYSDVKTAILFL-KRPDSLLIANPLAREETWFYELP 415 Query: 380 LRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEE----- 434 L + F K + +D H ++ LS E + + A+ S E Sbjct: 416 LPEGLKKFSKGSRISDSHFDEARHLWQVWSDYLSGNAERPFVYAADLRPHQTSNEPTPIQ 475 Query: 435 -----NKNTDQHLATSRWRKFS-------REWIRTAKS---DSLDISWLKDKDSIDADSL 479 NK T L++ R+F WI T D+S ++ ++ +S Sbjct: 476 ETFFANKQTSLQLSSINNRQFEPVFARNINAWIETYNDIASRGFDLSA-RNPHRVEQESR 534 Query: 480 PEPDVLAAEAMGELVQALSELDALMRELGA 509 VL A L++ EL ++++ L A Sbjct: 535 ESAFVLTA----RLLERSRELHSMIQSLHA 560 >UniRef50_Q57168 Putative type I restriction enzyme HindVIIP M protein n=176 Tax=cellular organisms RepID=T1MH_HAEIN Length = 443 Score = 287 bits (733), Expect = 1e-75, Method: Composition-based stats. Identities = 82/471 (17%), Positives = 155/471 (32%), Gaps = 58/471 (12%) Query: 50 LPEGYRWDDLKS----RIGQEQ--------LQFYRKMLVHLGEDDKKLVQAVFHNVSTTI 97 +P RW L+ G E + E D + ++ V +S Sbjct: 1 MPASARWQALQEVSILNTGAELPWGGKFSGVAKLIDDAFDAIEKDNEKLKGVLQRISGYA 60 Query: 98 TEPKQITALVSNMDSLDWYNGAHGKSR------DDFGDMYEGLLQKNANETKSGAGQYFT 151 + L+ + + D G +YE L + A +GQYFT Sbjct: 61 VNEDTLRGLIILFSDTHFTRPTYNGEPVHLGAKDILGHVYEYFLSRFAQAEGKRSGQYFT 120 Query: 152 PRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRA 211 P+ ++ I+ +L+P V DPA G+ GF ++ +R++ + +++ + + Sbjct: 121 PKSIVSLIVEMLEPYSG-RVYDPAMGSGGFFVQTERFITAHQGNIN-----------NVS 168 Query: 212 FIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGS 271 G E P T +LA MN + I+ + A ++ K + NP F Sbjct: 169 IYGQEFNPTTWKLAAMNMAIRGIDYDFGKYNA----DSFTQPQHIDKKMDFIMANPHFND 224 Query: 272 AAG-------TNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEG-GKGTD 323 P N ++QH+I L P G+ A+++ + + + Sbjct: 225 KEWWNESLADDPRWAYGTPPKGNANFAWLQHMIYHLSPNGKIALLLANGSMSSQTNNEGE 284 Query: 324 IRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTN 383 IR+ +++ + ++ LP +F + + F + +V D R Sbjct: 285 IRKAIINADLVECMVALPGQLFTNTKIPACIWFLNRNK--------KRKGEVLFIDARQI 336 Query: 384 MPSFGK-RTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHL 442 + FT + + + A + A EE KN D L Sbjct: 337 GYMKDRVLRDFTADDIAKIADTLHAWQTS------DGYEDQAAFCKSATLEEIKNNDFVL 390 Query: 443 ATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGEL 493 R+ + E + + L E + + +G L Sbjct: 391 TPGRYVG-TAEQEDDGVPFAEKMQNLTALLKEQFAKSAELEAEIKKNLGGL 440 >UniRef50_Q31PC9 Type I restriction-modification n=27 Tax=cellular organisms RepID=Q31PC9_SYNE7 Length = 675 Score = 286 bits (732), Expect = 1e-75, Method: Composition-based stats. Identities = 96/485 (19%), Positives = 170/485 (35%), Gaps = 83/485 (17%) Query: 3 NNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK------------ETG--QEAE 48 +L A +W + D LR G +Y + L+ E + Sbjct: 98 RQNLSAFIWSVADLLR-GDYKQSDYGKIILPFTVLRRLDCVLAPTKAAVLEEKVLRESQG 156 Query: 49 YLPEGYRWD------------DLKSRIGQ--EQLQFYRKMLVHLGEDDKKLVQAV-FHNV 93 PE + DLK +G + R + + + + FH Sbjct: 157 LAPEPFLLKKAGQNFCNTSPLDLKQLMGDADNIGENLRAYIQGFTPAVRDIFDSFEFHLQ 216 Query: 94 STTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153 + + + + +D + S + G ++E L++K A + AG++FTPR Sbjct: 217 IDRLEKAGLLYLVTERFAQIDLH--PDTVSNAEMGLVFEELIRKFAELSNETAGEHFTPR 274 Query: 154 PLIKTIIHLLKPQPR---------EVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQ 204 +I+ +++LL + + DP AGT G L A+ ++ + Sbjct: 275 EVIRLMVNLLFIEDDAALTQPGIVRSLYDPTAGTGGMLSVAEEHLTELNPSARLV----- 329 Query: 205 DFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVA 264 G EL P + + + L+ I GNTL D K + Sbjct: 330 -------LSGQELNPESYAICKADMLIKGQNIQ-----NICFGNTLSDDKLPDAKYDYML 377 Query: 265 TNPPFGSAAGT---------------NITRTFVHPTSNKQLCFMQHIIETLHP----GGR 305 +NPPFG + S+ L F+ H+I + P G R Sbjct: 378 SNPPFGVEWKKIQKEVQREAEQLGYSGRFGPGLPRVSDGSLLFLLHLISKMRPASEGGSR 437 Query: 306 AAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTV 362 +V+ + LF GG ++IRR +++ + I+ LPT +FY G+ T + + Sbjct: 438 LGIVLNGSPLFTGGAGSGESEIRRYVLENDLVEAIIALPTDMFYNTGISTYIWILSNRKP 497 Query: 363 ANPNQDKNCTDDVWVY-DLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWS 421 A+ D + +R ++ S KR ++E + R++G Sbjct: 498 ASRKGKVQLIDASGFWQKMRKSLGS--KRKELSEEQIAEITRLFGNFEEADRDGKPVSKI 555 Query: 422 FNAEE 426 F EE Sbjct: 556 FRNEE 560 >UniRef50_Q47282 Type I restriction enzyme EcoEI M protein n=110 Tax=Bacteria RepID=T1ME_ECOLX Length = 490 Score = 285 bits (730), Expect = 2e-75, Method: Composition-based stats. Identities = 125/495 (25%), Positives = 210/495 (42%), Gaps = 52/495 (10%) Query: 6 LVAKLWKLCDNLRDG-GVS-YQNYVNELASLLFLKMCK--------ETGQEAEYLPEGYR 55 + + + L D +R GV + +L+ LLFLK+ E +P+ Y Sbjct: 3 ISSVIKSLQDIMRKDAGVDGDAQRLGQLSWLLFLKIFDTQEEELELEQDDYQFPIPQRYL 62 Query: 56 WDDLKSR----IGQEQLQFYRKMLVHLGEDDKK---------LVQAVFHNVSTTITEPKQ 102 W + G L+F L ++ +V+ F + + Sbjct: 63 WRSWAANSEGITGDALLEFVNDDLFPTLKNLTAPIDKNPRGFVVKQAFSDAYNYMKNGTL 122 Query: 103 ITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHL 162 + +++ ++ +D+ + + R FGD+YE +L+ ++ AG+++TPR + + +++ Sbjct: 123 LRQVINKLNEIDFSSS---QERHLFGDIYEQILRDL--QSAGNAGEFYTPRAVTRFMVNR 177 Query: 163 LKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTR 222 + P+ E + DPA GT GFL A +VK + + + G+E Sbjct: 178 IDPKLGESIMDPACGTGGFLACAFDHVKDNY-----VKTTEDHKTLQQQIYGVEKKQLPH 232 Query: 223 RLALMNCLLHDIEGNLDHGGAIRLGNTLGSD-GENLPKAHIVATNPPFGSAAGTNITRTF 281 L N LLH IE + IR NTL + ++ TNPPFG I + F Sbjct: 233 LLCTTNMLLHGIEVPVQ----IRHDNTLNKPLSSWDEQVDVIVTNPPFGGTEEDGIEKNF 288 Query: 282 VH--PTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILR 339 T F+Q IIE L GRAAVV+PD LF G T I++ L ++C+LHTI+R Sbjct: 289 PAEMQTRETADLFLQLIIEVLADKGRAAVVLPDGTLFGEGVKTKIKKLLTEECNLHTIVR 348 Query: 340 LPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYD--LRTNMPSFGKRTPFTDE 396 LP G+F G+KTN+LFFTKG T +VW Y+ + ++ K P E Sbjct: 349 LPNGVFNPYTGIKTNILFFTKGQP---------TKEVWFYEHPYPDGVKNYSKTKPMKFE 399 Query: 397 HLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIR 456 Q +G + + R E ++ ++ N + E + Sbjct: 400 EFQAEIDWWGNEADDFASREENNQAWKVGIDDIIARNFNLDIKNPYQGETISHDPDELLA 459 Query: 457 TAKSDSLDISWLKDK 471 ++ +I L+++ Sbjct: 460 QYQTQQAEIGELRNQ 474 >UniRef50_Q11PS3 Type I restriction-modification system, M subunit n=5 Tax=Bacteria RepID=Q11PS3_CYTH3 Length = 528 Score = 285 bits (729), Expect = 3e-75, Method: Composition-based stats. Identities = 104/573 (18%), Positives = 202/573 (35%), Gaps = 129/573 (22%) Query: 1 MNNND---LVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK---ETGQEAEYLPEGY 54 M+ + L +LW + + LR G ++ + + + +F K E + Sbjct: 1 MSEDQKRILEQQLWNIANTLR-GKMNADEFRDYILGFIFYKYLSEKMEIFANDILKQDKI 59 Query: 55 RWDDLKSRIGQE------------------------------------------------ 66 + ++ ++ Q Sbjct: 60 SFREITPKLKQGKEYLEAIREEALEKLGYFLKPEELFSEVAKRGRGSNDEGENFDEAKTN 119 Query: 67 -QLQFYRKMLVHL-----GEDDKKLVQAVFHNVSTTITE--------PKQITALVSNMDS 112 L+ +K+L+++ G D ++ +F ++ T+ I +++++D Sbjct: 120 FILEDLQKILINIQLSTMGTDSEEDFDNLFEDMDLNSTKLGKTPDARNAIIAKVLTHLDK 179 Query: 113 LDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPRE--V 170 +D+ D GD YE L+ + A+ AG+++TP+ + K + ++ + + Sbjct: 180 IDF--KLEDLESDVLGDSYEYLIGQFASGAGKKAGEFYTPQQVSKILAKIVTTEKHKLKS 237 Query: 171 VQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL 230 V DP G+ L+ R VK F G E+ T LA MN + Sbjct: 238 VYDPTCGSGSLLLRVAREVKDVAK-----------------FYGQEMNRTTYNLARMNMI 280 Query: 231 LHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAG-------TNITRTF-- 281 LH + I+ +TL + + NPPF + + + Sbjct: 281 LHGVHYRKF---DIKQEDTLEHPQHMGQQFEAIVANPPFSAQWSANPLHLSDDRFSQYGK 337 Query: 282 VHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMD-KCHLHTILRL 340 + P S F+QH++ L G A+V+P VLF GG IR+ L++ K +L ++ L Sbjct: 338 LAPASKADYAFVQHMVHHLAENGIMALVLPHGVLFRGGAEQHIRKYLIEQKNYLDAVIGL 397 Query: 341 PTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQP 400 P IFY + T +L K + D++ D + ++H+ Sbjct: 398 PGNIFYGTSIPTCILVIKKC--------REMPDNILFIDASKEFEKVKTQNILREKHIDK 449 Query: 401 FERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKS 460 Y S + ++S A E+A+++ N N +++ T + Sbjct: 450 IVDTYR------SRKEIEKYSHCASLKEIAENDFNLNIPRYVDT------------FEEE 491 Query: 461 DSLDISWLKDKDSIDADSLPEPDVLAAEAMGEL 493 + +DI + + + D M EL Sbjct: 492 EEIDIQAVMAEIKNLEAKRTDLDKQIDVYMKEL 524 >UniRef50_A5GB18 N-6 DNA methylase n=2 Tax=Bacteria RepID=A5GB18_GEOUR Length = 549 Score = 285 bits (729), Expect = 3e-75, Method: Composition-based stats. Identities = 126/549 (22%), Positives = 215/549 (39%), Gaps = 80/549 (14%) Query: 3 NNDLVAKLWKLCDNLRDGGV-SYQNYVNELASLLFLKMCKETGQEAEY------------ 49 N DL KL + D L GGV + Y+ +++ L++LK+ E E Sbjct: 2 NADLRRKLDHITDTLWAGGVTNPVTYIEQISFLIYLKLLDEEETSRELRVRLGAGNSRFL 61 Query: 50 ---LPEGYRWDDLKSRIGQEQLQFYRKMLVHLGE---DDKKLVQAVFHNVSTTITEPKQI 103 E +RW + + G E F R + D+ V F + I E + Sbjct: 62 FPDQAERFRWSKWRFKSGIELNDFIRGEVFPYMASLVKDEPQVAEYFRDARLEINEVDVL 121 Query: 104 TALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL 163 +V +DS+++ D GD++E LL GQ+ TP+ + ++ ++ Sbjct: 122 KQVVDELDSIEF----RKLGPDVKGDIFEYLLTHLGQSA--LNGQFRTPKQIRSFMVAMV 175 Query: 164 KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHR------------- 210 P+ + + DPA GTAGFLI+A Y+ ++ ++ + + R Sbjct: 176 DPEFGDTIDDPACGTAGFLIDAVEYLLAKYSENPQEMPIYGEEWLERKGLTLDEAKKQMP 235 Query: 211 ---------------------AFIGLELVPGTRRLALMNCLLHDI-EGNLDHGGAIRLGN 248 + G ++ R+++MN +LH I + L + Sbjct: 236 NLQTYRKGPGEKIPDWGILEASIYGTDVSRQMMRISMMNLVLHGIGKARLKRANVLSEMG 295 Query: 249 TLGSDGENLPKAHIVATNPPF-GSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAA 307 L D + K + +NPPF G +I + +L F+ ++E+L PGGR A Sbjct: 296 GLTED-DLNRKYKVSLSNPPFAGMLPKDSIRHDLPTNSKKSELLFLGLMMESLAPGGRCA 354 Query: 308 VVVPDNVLFEG-GKGTDIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANP 365 VVVP+ LF G ++R+ L+ + ++ LP G+F GVKT+VL F + P Sbjct: 355 VVVPEGALFGSTGAHVELRKKLLQDFEVLAVVSLPAGVFKPYAGVKTSVLVFRR-PANPP 413 Query: 366 NQDKNCTDDVWVYDLRTNMPSFGK----RTPFTDE--HLQPFERVYGEDPHGLSPRTEGE 419 Q K T VW Y+++ + K P T E + + G + G Sbjct: 414 EQGKPATAKVWFYEIKNDGYDPDKITGGGRPETPEQNDIPTMLVAWEGYKAGKFSQPPGV 473 Query: 420 WS-------FNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSL--DISWLKD 470 + + AD E ++D +L SR++ E + L D+ L+ Sbjct: 474 EAGTVLKPGSPDPKCWWADYERIADSDANLGASRYKPTVGEDLSDEDPAELIHDVLMLEK 533 Query: 471 KDSIDADSL 479 + L Sbjct: 534 NLVDGLEKL 542 >UniRef50_D2NY13 Type I restriction enzyme M protein n=5 Tax=Listeria RepID=D2NY13_LISMO Length = 529 Score = 283 bits (725), Expect = 8e-75, Method: Composition-based stats. Identities = 97/579 (16%), Positives = 192/579 (33%), Gaps = 111/579 (19%) Query: 3 NNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA-EYLPEGYRWDDLKS 61 + + K+W + + R G + Y + + +LF K E + G W+ + S Sbjct: 4 STEQKTKMWAMLNQTR-GQIGLTAYKDYIFGILFYKYLSEKATHWLNGVLRGENWESVYS 62 Query: 62 RIGQEQLQFYRKML-----------------------------------VHLGEDDKKLV 86 + + L + +K L + + K Sbjct: 63 QDSVKALNYMKKNLGYAIQPNEFFVDWKKAIDRDRFNIGMMTDTFTHFNQQIAFEAKNDF 122 Query: 87 QAVFHNVSTTITE-----PKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANE 141 + +F + + + + ++S ++ L S D D+YE L+ + A Sbjct: 123 EGIFDGMRFDSADLGANAQARASVMISMIELLSSPEFDLSGSNDTVSDIYEYLVAQFATV 182 Query: 142 TKSGAGQYFTPRPLIKTIIHLLKPQPRE----VVQDPAAGTAGFLIEADRYVKSQTNDLD 197 S GQY+TP+ + + +L + + DP G+ L+ Y+K+ Sbjct: 183 LASDMGQYYTPKEISNVMARILTFGREDMEKFSIFDPTVGSGSLLLTTASYMKNSGRRGV 242 Query: 198 DLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN---LDHGGAIR--LGNTLGS 252 + G E RL+ MN ++H IE N ++H + + + Sbjct: 243 ------------IKYYGQEKDATPYRLSRMNLMMHGIEYNDININHADTLESDWPDGVVE 290 Query: 253 DGENLPKAHIVATNPPFGSAAGTN-------ITRTFVHPTSNKQLCFMQHIIETLHPGGR 305 + V NPP+ + V P + F+ H + L GR Sbjct: 291 GKDTPRMFDAVMANPPYSAHWNNKDREDDPRWREYGVSPKTKADYAFLLHCLYHLEDNGR 350 Query: 306 AAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANP 365 A+++P VLF G IR+ L+DK + I+ P +F + V+ K + + Sbjct: 351 MAIILPHGVLFRGASEGRIRKALIDKHQIEAIIGFPDKLFLNTSIPVCVVILRKNRIES- 409 Query: 366 NQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAE 425 D+ D K+ E ++ + Sbjct: 410 --------DILFVDASKGFEKIKKQNNLRSEDVEKIVDT------------VINRKEIEK 449 Query: 426 ETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVL 485 + VA +E K D +L R+ + +++++ID +L V Sbjct: 450 YSHVATLDEIKENDYNLNIPRY-----------------VDTFEEEEAIDLVALGNEMVT 492 Query: 486 AAEAMGELVQALSELDALMRELGASDEADLQRQLLEEAF 524 ++ +A ++ L+ EL + + + + F Sbjct: 493 LNA---DIKKAETDFLGLLDELAVTPDTKEIIEATKAVF 528 >UniRef50_A0KWT9 N-6 DNA methylase n=5 Tax=Bacteria RepID=A0KWT9_SHESA Length = 513 Score = 283 bits (724), Expect = 1e-74, Method: Composition-based stats. Identities = 112/535 (20%), Positives = 204/535 (38%), Gaps = 72/535 (13%) Query: 1 MNNNDLVAKLWKLCDNLRDGGV-SYQNYVNELASLLFLKMCKETGQEAEY---------- 49 M L + + KL + GG+ + + ++ L++ ++ Q E Sbjct: 1 MITGKLKSDINKLWEEFWTGGIANPLTVIEQITFLMYARLLDLHEQRDEKRAKLRGIDFK 60 Query: 50 -----LPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKK---LVQAVFHNVSTTITEPK 101 + RW + L+ R + ++ L + I +P Sbjct: 61 RRFNDNQQHIRWHRFIHQDKDTMLKLVRDEVFPHFKNASGEGSLFGEFMKDAQCMIQKPT 120 Query: 102 QITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIH 161 + + V +D L + D GD+YE LL K GQ+ TPR +I+ ++ Sbjct: 121 LMESAVEMIDKLPL------EDSDTKGDLYEYLLSKLTTA--GINGQFRTPRHIIRAMVE 172 Query: 162 LLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLD----------------------DL 199 +L P + + DP+ GTAGFL A Y+ + + DL Sbjct: 173 MLDPTVEDRIVDPSCGTAGFLTVAYEYLLEKYTSPEGVHTETVVGDNGEAQQVKIYSGDL 232 Query: 200 DGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI-EGNLDHGGAIRLGNTLGSDGENLP 258 + +D+ F G + R+A MN ++H + E ++ + + T ++ Sbjct: 233 LVEHRDYVNTDMFHGFDFDATMLRIAAMNLVMHGVTEPDVHYQDTLSGSFTERFPNQSKD 292 Query: 259 KAHIVATNPPF-GSAAGTNITRTFV--HPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVL 315 + NPPF GS ++ + T +L F+ I+ L GG+ A++VPD VL Sbjct: 293 AYTLCIANPPFKGSLDEEDVDPAILRMVKTKKTELLFVAQILRLLKNGGKTAIIVPDGVL 352 Query: 316 F-EGGKGTDIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTD 373 F +R+ +++ L ++ LP+G+F GV T +LF TKG+ TD Sbjct: 353 FGSSNAHQQLRQHIIENNELQAVVSLPSGVFKPYAGVSTAILFITKGS---------RTD 403 Query: 374 DVWVYDLRTNMPSF-GKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADS 432 VW YD++ + S KRTP D L + E E + +++ Sbjct: 404 HVWFYDVQADGMSLDDKRTPIKDNDLPDLVAKFKAR---DKAIAETEQNDRSQKAFWVSK 460 Query: 433 EENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAA 487 + L+ +R+++ + + L +++ D L + L Sbjct: 461 ADIVGNKYDLSINRYKQVVYAEQQYDDPKVI----LSKLVALENDILADLKALED 511 >UniRef50_C7NHN8 Type I restriction-modification system methyltransferase subunit n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NHN8_KYTSD Length = 663 Score = 282 bits (722), Expect = 2e-74, Method: Composition-based stats. Identities = 94/500 (18%), Positives = 174/500 (34%), Gaps = 84/500 (16%) Query: 8 AKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKET-----------GQEAEYLPEGYRW 56 +W + D LR G + Y + L + ++ E P+ R Sbjct: 19 NFIWGIADMLR-GPYRPKEYGTVILPFTVLARFESVLEPTKDAVLAASEKYESAPDLVRH 77 Query: 57 DDLKSRIGQEQLQF-----------------YRKMLVHLGEDDKKLVQAV-FHNVSTTIT 98 + LK GQE + ++ E+ +++ + + + Sbjct: 78 EMLKRASGQEFYNISQFTLSTLGDPANQAANLQNLIEGYNEEVRQVFERFDMPKIIRDLD 137 Query: 99 EPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKT 158 + +++A+V +LD + S + GD++E L+++ +K AG YFTPR +++ Sbjct: 138 DRDRLSAVVKEFAALDVH--PDRVSNAEMGDVFEELIRRFMEASKDVAGDYFTPREVVRL 195 Query: 159 IIHLL---------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIH 209 ++ LL P V DP GT G L EA +++ Sbjct: 196 MVSLLFSPDTEDLSDPHLIRQVYDPTCGTGGMLSEAHEWMREHNG------------HAT 243 Query: 210 RAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPF 269 G E + +A + ++ + I G+TL DG +NPPF Sbjct: 244 LNLFGQEFNALSYAMAKADLIIKKQDAQ-----NIFFGDTLLVDGHEGKTFSYCISNPPF 298 Query: 270 GSAA---------------GTNITRTFVHPTSNKQLCFMQHIIETLHP----GGRAAVVV 310 G + ++ + F+QH++ + P GGR A+V+ Sbjct: 299 GQDWKVQEKAVKAERERDGDEGRFAAGLPSVNDGAMLFLQHLVSKMRPAAQGGGRGAIVL 358 Query: 311 PDNVLFEGGKGT---DIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQ 367 + LF G G +IRR L++ + I+ LPT +FY G+ T + Sbjct: 359 NGSALFTGSAGQGPSEIRRHLLENDLVDAIIGLPTDLFYNTGIATYIWVLDNNKPQERRG 418 Query: 368 DKNCTDDV-WVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEE 426 D +R ++ KR ++ ++ +YGE P ++ Sbjct: 419 KVQLIDGTAQWVKMRKSI--GAKRRMLSEANITSIVDLYGEYEDA-DPEVSKVFNTEDFG 475 Query: 427 TEVADSEENKNTDQHLATSR 446 E+ + R Sbjct: 476 YRTITVEQPLRQVYSVDEDR 495 >UniRef50_B2A7T0 N-6 DNA methylase n=13 Tax=Bacteria RepID=B2A7T0_NATTJ Length = 673 Score = 282 bits (722), Expect = 2e-74, Method: Composition-based stats. Identities = 105/593 (17%), Positives = 204/593 (34%), Gaps = 104/593 (17%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK-------------------- 41 + + V +W + D LR G +Y + LK Sbjct: 5 SFQEKVNFIWSIADLLR-GDYKRSDYGKVILPFTVLKRLDCALKPTKNKVLEEYKMLKDS 63 Query: 42 ----------ETGQEAEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAV-F 90 + + + + ++ +K+ R + + + +++ F Sbjct: 64 GIQNPEPVLNDITGQHFHNTSQFDFEKMKNEP-DNIGDNLRHYINGFSTNARDIIEYFNF 122 Query: 91 HNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYF 150 H+ + + + +VS +D S + G ++E L++K + ++ AG++F Sbjct: 123 HDHLERLEQSNLLYLIVSRFSEIDL--SPEKVSNLEMGYIFEELIRKFSEQSNETAGEHF 180 Query: 151 TPRPLIKTIIHLLKPQPRE---------VVQDPAAGTAGFLIEADRYVKSQTNDLDDLDG 201 TPR +I+ +++LL + + + DPA GT G L A Y++ ND Sbjct: 181 TPREVIRLMVNLLFNEDSDLLQKEGLLRTIYDPACGTGGMLSVARDYLRELNNDA----- 235 Query: 202 DTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAH 261 G EL P + + + ++ ++ I+ GN+ +DG + Sbjct: 236 -------KLEMFGQELNPESYAICKADMMIKGLDP-----DNIKFGNSFTNDGFSDNTFD 283 Query: 262 IVATNPPFGSAAGT---------------NITRTFVHPTSNKQLCFMQHIIETL---HPG 303 + +NPPFG + ++ + F+QH+I + + G Sbjct: 284 YMLSNPPFGVEWKKIEKEIKEEHENLGFSGRYGAGLPRINDGSILFLQHMISKMQHQNGG 343 Query: 304 GRAAVVVPDNVLFEGGKGT---DIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 360 R A+V+ + LF G G +IR+ +++ L I+ LP +FY G+ T V T Sbjct: 344 SRIAIVLNGSPLFTGDAGQGESNIRKWIIENDLLEAIVALPEQLFYNTGINTYVWVLTNR 403 Query: 361 TVANPNQDKNCTDDVWVY-DLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGE 419 + V Y +R ++ KR + E + ++YGE G + Sbjct: 404 KRPWRKGKIQLINAVEFYKKMRKSLGE--KRHEISPEQIDKISKIYGEFKEGEYSKIFDN 461 Query: 420 WSFNAEETEVADSEENKNTDQHLATSRWRKFSR-----------------EWIRTAKSDS 462 F + V R ++ E + Sbjct: 462 EDFGYYKITVERPLRLNFQASDERIERLKEQRAFQNLAKSKKKDPAKKEEEINEGEEQQE 521 Query: 463 LDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSE--LDALMRELGASDEA 513 I+ LK D + E + EA+ + L A+++ L DE Sbjct: 522 AIINVLKSMDETVYKNREEFTKILDEALKDAGIKLKASLKKAVLKALSEQDET 574 >UniRef50_A5VLF8 N-6 DNA methylase n=17 Tax=Bacteria RepID=A5VLF8_LACRD Length = 517 Score = 282 bits (720), Expect = 3e-74, Method: Composition-based stats. Identities = 111/540 (20%), Positives = 222/540 (41%), Gaps = 75/540 (13%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQ-NYVNELASLLFLKMCKETGQEAEYLP-------- 51 M +L +K+ L + GG++ N + ++ L+F+K ++ + Sbjct: 1 MIAGELKSKIDGLWETFATGGLTNPLNVIEQITYLMFIKDLDDSDNRRKKDNILLGLNDY 60 Query: 52 ------------------EGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKK----LVQAV 89 + RW K ++ + + ++ K Sbjct: 61 QSIFDGEVKIDDDLTVNGDELRWSTFKDFAPEKMFTIVQTEVFPFIKNLKNNEEGSYARY 120 Query: 90 FHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSR--------------DDFGDMYEGLL 135 + + I P ++ ++ +D + + D GD+YE LL Sbjct: 121 MKDATFLIPTPGLLSKVIGELDDIYRLMDEEVQKDNSKNKEKALIINRGDVRGDVYEYLL 180 Query: 136 QKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTND 195 K + + GQ+ TPR +IK I+ L+ PQ + + DPAAGTAGFL+E+ +++ + + Sbjct: 181 GKLSTAGR--NGQFRTPRHIIKMIVELMNPQVTDKICDPAAGTAGFLVESAEFLQDKKKE 238 Query: 196 LDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE-GNLDHGGAIRLGNTLGSDG 254 + + + + + F G + R+ MN L H ++ N+++ ++ NT + Sbjct: 239 EIFYNKENRHYFHNEMFTGYDTDQTMLRIGAMNMLSHGVDNPNVEYQDSLSEQNTDRDE- 297 Query: 255 ENLPKAHIVATNPPFGSAAGTN---ITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 311 ++ NPPF + N + T +L F+ ++ L GGR A +VP Sbjct: 298 -----YSLIMANPPFKGSLDYNSVSKDLLKICKTKKTELLFVTLFLQMLKVGGRCACIVP 352 Query: 312 DNVLFEGGK-GTDIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDK 369 D VLF K IR+++++ +L ++ +P+G+F GV T +L FTK Sbjct: 353 DGVLFGSSKAHKSIRKEIIENNNLEAVISMPSGVFKPYAGVSTAILIFTKTGNG------ 406 Query: 370 NCTDDVWVYDLRTNMPSF-GKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETE 428 TD VW YD+ + S KRTP + + + + + ++ Sbjct: 407 -GTDKVWFYDMTADGFSLDDKRTPVKENDIPDIIERFNHLDKEVDRKK-------TNKSF 458 Query: 429 VADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAE 488 + D ++ + D L+ +R+++ + ++ ++ + I+ ++ D D+L E L + Sbjct: 459 MVDKKDIVDNDYDLSINRYKEIEYKPVKYPPTEEI-IAEIEKLDKEANDALQELKALLKD 517 >UniRef50_B9XME0 N-6 DNA methylase n=1 Tax=bacterium Ellin514 RepID=B9XME0_9BACT Length = 811 Score = 280 bits (717), Expect = 7e-74, Method: Composition-based stats. Identities = 116/521 (22%), Positives = 204/521 (39%), Gaps = 51/521 (9%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEG------- 53 M ++D ++ + L ++ V ++ L K + E+E L Sbjct: 1 MLDSDTKRRIDTARNILVGKVPDPKSQVEQITIALIYKFMDDMDAESEELGGKRKFFTKD 60 Query: 54 ---YRWDDLKS--RIGQEQLQFYRKMLVHLGED--DKKLVQAVFHNVSTTITEPKQITAL 106 Y W L G E L Y + + + ++ L + +F N +P+ + A Sbjct: 61 FARYGWARLMRSGLGGHELLGLYGEGIAKMPQNPGIPLLFREIFKNAYLPYRDPETLKAF 120 Query: 107 VSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQ 166 + +D + + GD +E LL ++ AGQ+ TPR +I I+ ++ P+ Sbjct: 121 LKIIDEFTYDHSER------LGDAFEYLLSVLGSQ--GDAGQFRTPRHIIDFIVSVVDPK 172 Query: 167 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDF--QIHRAFIGLELVPGTRRL 224 E V DPA GTAGFLI + +++ D T D ++ + F G ++ P RL Sbjct: 173 KNETVLDPACGTAGFLISSYKHILRANTDARGNSKLTPDDRGRLAKNFKGYDISPDMVRL 232 Query: 225 ALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPP-FGSAAGTNITRTFVH 283 +L+N LH I +TL S+ A ++ NPP G + F Sbjct: 233 SLVNLYLHGFTD-----PHIYEYDTLTSEERWNEFADVILANPPFMSPKGGIKPHKRFSV 287 Query: 284 PTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGG-KGTDIRRDLMDKCHLHTILRLPT 342 P++ ++ F+ +++E L GRA ++VP+ ++F+ G +R L+ + L I+ LP+ Sbjct: 288 PSNRSEVLFVDYMLEHLTAHGRAGIIVPEGIIFQSGTAYRRLREVLLKE-SLIGIISLPS 346 Query: 343 GIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTD-EHLQP 400 G+F GVKT++L K + V D+R S G + T+ L Sbjct: 347 GVFQPYSGVKTSILILDKRVAKSRP-------HVLFSDIRAIGVSLGVKRTVTERNDLPF 399 Query: 401 FERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKS 460 + Y G + + + + + D + R+R T Sbjct: 400 VVQDYAAYHEG---------TELSRHSFLVERNAIAANDYIFSAERYRPVE-ARAGTRVV 449 Query: 461 DSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELD 501 D+ L + P L A L + E+D Sbjct: 450 RLKDVCSLTKGTHSSTKTQRGPYPLIVTAKEPLSSSDYEID 490 >UniRef50_C7RVC4 N-6 DNA methylase n=2 Tax=Bacteria RepID=C7RVC4_9PROT Length = 606 Score = 280 bits (715), Expect = 1e-73, Method: Composition-based stats. Identities = 121/582 (20%), Positives = 213/582 (36%), Gaps = 110/582 (18%) Query: 2 NNNDLVAKLWKLCDNLRDG-GVSYQ-NYVNELASLLFLKMCKETGQEAEYLPE------- 52 +L + + LR G++ + + L ++FLK + E + Sbjct: 21 TRENLSSLIGTARQILRKDKGLNGDVDRLPLLTWVMFLKFLDDLETVHEEEADLDGKRYQ 80 Query: 53 -----GYRWDDLKSR----IGQEQLQF-------------------YRKMLVHLGED--D 82 YRW D +R G E L F Y + L LGE Sbjct: 81 PIIEAPYRWRDWAAREDGINGDELLAFIGQEVTVRADGKVGKGLFSYLRGLAGLGEKGSQ 140 Query: 83 KKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANET 142 +++V VF V + + +++ ++ + + + + +YE +L++ + Sbjct: 141 REVVANVFKGVQNRMVSGYLLRDIINKINGIHFRSS---EEIHTLSHLYESMLREMRDAA 197 Query: 143 KSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGD 202 +G+++TPRP+++ ++ + P+ E V DPA GT GFL+ A ++ +Q + Sbjct: 198 G-DSGEFYTPRPVVRFMVQVTDPKLGETVLDPACGTGGFLVGAYDHIAAQVTTPAEW--- 253 Query: 203 TQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEG-NLDHGGAIRLGNTLGSDGENLPKAH 261 G E P L MN LLH +E + +G + + ++ + + Sbjct: 254 --RKLQRETLFGQEAKPLPYMLVQMNLLLHGLEAPQIAYGNTL---DRRINEIGHGERVD 308 Query: 262 IVATNPPFGSAAGTNITRTFVHPTSNKQL--CFMQHIIETLH-------------PGGRA 306 ++ TNPPFG I F + F+Q+I+ L GGRA Sbjct: 309 VILTNPPFGGEEEVGIKANFPPNMQTAETTQLFLQYIMRKLRVVGAPVRGGKPAARGGRA 368 Query: 307 AVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANP 365 AVVVP+ LF G I+ +++ + LHTI+RLP G+F + N+LFF +G Sbjct: 369 AVVVPNGTLFGDGISAVIKEEMLKEFRLHTIVRLPQGVFAPYTDIPANLLFFERGGP--- 425 Query: 366 NQDKNCTDDVWVYDL--RTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFN 423 TD +W Y++ + K TP + + G + Sbjct: 426 ------TDTIWYYEMPLPEGRKKYTKTTPLQFDEFASALAWWDAREEGPQAWKVDFAAKR 479 Query: 424 AEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPD 483 +VA W++ E ++ + + Sbjct: 480 QAAVDVATPN-------------WQRAESE---------------RNAAIALGKPIRGIE 511 Query: 484 VLAAEAMGELVQALSELDALMRELGASDEADLQRQLLEEAFG 525 A AL E +R L A +A Q + +A G Sbjct: 512 QTIQAAANGDKAALQE---QLRALKAGQQAHEQAAKVAQAEG 550 >UniRef50_C7RQC1 N-6 DNA methylase n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RQC1_9PROT Length = 769 Score = 280 bits (715), Expect = 1e-73, Method: Composition-based stats. Identities = 104/596 (17%), Positives = 204/596 (34%), Gaps = 103/596 (17%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK-------------------- 41 +N +V+ +W + D++ Y + + + ++ Sbjct: 5 THNKIVSFIWGIADDVLRDLFKRGKYPDVILPMCVIRRMDAVLEPTKQSVLDTRRMLDAA 64 Query: 42 ----------ETGQEAEYLPEGYRWDDLKSRIGQE-QLQFYRKMLVHLGEDDKKLVQAV- 89 + +A Y + DLKSR Q+ L + L + + ++ Sbjct: 65 GITEQRAALCDAAGQAFYNTSRFTLRDLKSRGSQQRLLADFEDYLNGFSANVQDILDNFK 124 Query: 90 FHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQY 149 F N T++ I L++ D G G ++E L++K E AG++ Sbjct: 125 FRNQLQTLSRADAIGTLINKFLDPDIDLSPAGIDNHSMGTVFEELVRKFNEENNEEAGEH 184 Query: 150 FTPRPLIKTIIHLLKPQPREVV-------QDPAAGTAGFLIEADRYVKSQTNDLDDLDGD 202 +TPR ++ + +L+ + D A GT G L A+ + + Sbjct: 185 WTPRDAVRLMANLVFRPIESAIRSGTYLLYDCACGTGGMLTVAEETLTAIAAGRGQ---- 240 Query: 203 TQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHI 262 Q+ G E+ P T + + LL + DH +TL D + Sbjct: 241 ----QVRCLLYGQEINPETYAVCKADMLLKGEGESADHIVGGAEWSTLAHDAFPAREFDF 296 Query: 263 VATNPPFGSAAGTN----------ITRTFVH-----------PTSNKQLCFMQHIIETLH 301 + NPP+G + + F +S+ Q+ F+ ++ ++ Sbjct: 297 MLANPPYGKSWKKDLEAMGGKDGMRDPRFKVMHQGEELSLVTRSSDGQMLFLANMASKMN 356 Query: 302 P----GGRAAVVVPDNVLFEGGKGT---DIRRDLMDKCHLHTILRLPTGIFYAQGVKTNV 354 G R A V + LF G G +IRR L++ L I+ LP +FY G+ T + Sbjct: 357 GQSALGSRIAEVHNGSSLFTGDAGQGESNIRRWLIENDWLEAIVALPLNLFYNTGIATYI 416 Query: 355 LFFTKGTVANPNQDKNCTDDV-WVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLS 413 + A+ D W LR N+ K + E ++ R + + Sbjct: 417 WVLSNRKPAHRQGRVQLIDASQWFKPLRKNLGK--KNCELSPEDIERISRSFLDFAETPE 474 Query: 414 PRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDS 473 + +F E + + S + I T + +S D +D + Sbjct: 475 SKIFPNAAFG---YWKVTVERPLRL--------YSQLSLKAIETLRFNSGD----EDLRA 519 Query: 474 IDADSLPEPDVLAAEAMGELVQALSELDALMRELGASDEADLQRQLLEEAFGGVKE 529 + + + + L+ + + G+SD+++ + ++ GG K+ Sbjct: 520 TLYEEFGD------DLFTRFSAVSAALEKRLADWGSSDDSEGE----DDEGGGTKK 565 >UniRef50_C7NM08 Type I restriction-modification system methyltransferase subunit n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NM08_KYTSD Length = 644 Score = 279 bits (714), Expect = 1e-73, Method: Composition-based stats. Identities = 109/582 (18%), Positives = 193/582 (33%), Gaps = 106/582 (18%) Query: 4 NDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKE--TGQEAEYLPEGYRWDDLKS 61 D VA +W++ D LR G Y + + LL L+ +AE + + WD + Sbjct: 7 EDKVAFVWRIADRLR-GTFKQHEYGSVMLPLLVLRRMDAALADTKAEVVAQAKGWDTIGP 65 Query: 62 --------------------------RIGQEQLQFYRKMLVHLGEDDKKLVQAV-FHNVS 94 + K + HL + ++++A F Sbjct: 66 GQDKLLKRTSRRPFYNTSPLTFAGLLNDADNLRENLAKYIRHLSPEAARVIEAYDFDPKI 125 Query: 95 TTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRP 154 + + ++++ LD S + G ++E LL+K + + AG+++TPR Sbjct: 126 ERMDRDDILYGVIADFADLDL--RTSVVSNEAMGYIFEELLRKFSEMSNETAGEHYTPRE 183 Query: 155 LIKTIIHLL-----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDT 203 +I ++ LL P+P V DPAAGT G L+ A V+ + Sbjct: 184 VISLMVQLLLTGKTHTELMENPRPVRTVYDPAAGTGGMLVGALDGVQGLNGNAT------ 237 Query: 204 QDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIV 263 G EL T +A + ++ I GN+L D + + Sbjct: 238 ------VTVSGQELNDETWAIAQSDLMMLGIGPERM-----ARGNSLTQDAFPTEQFDFM 286 Query: 264 ATNPPFGSAAGT---------------NITRTFVHPTSNKQLCFMQHIIETLHPGG-RAA 307 NPP+G S+ F+QH+I + PGG R Sbjct: 287 LANPPYGVDWKKYAGPIKDEAENLGFSGRFGAGTPRVSDGSFLFLQHMISKMKPGGSRIG 346 Query: 308 VVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVAN 364 +V+ + LF G ++IR +++ L I+ LP +FY G+ T V T Sbjct: 347 IVLSGSPLFSGQAGSGESEIRGWILENDWLEGIVALPDQMFYNTGISTYVWILTNDKDG- 405 Query: 365 PNQDKNCTDDVWVYDLRTNMPS-----FGKRTPFTDEHLQPFERVYG----EDPHGLSPR 415 V + D R KR E ++ +YG E R Sbjct: 406 -----ASRGKVRLIDAREMGTKMRKSLGDKRKELKPEAIREITNLYGGALDEFADDPRVR 460 Query: 416 TEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSID 475 F + V R + + E + + + + Sbjct: 461 VMNRNDFGYQRITVER-----------PMRRHWEVTSELAEAHEGIGHLVGRRFETEKAL 509 Query: 476 ADSLPEPDVLAA-EAMGELVQALSELDALMRELGASDEADLQ 516 ++ L + D + A E ++++ + + DL+ Sbjct: 510 SNELADLDTKERKAVLKGAAIADEEAPVILKKGEPAPDPDLR 551 >UniRef50_UPI000038E019 type I restriction-modification system methylation subunit n=2 Tax=Ferroplasma acidarmanus fer1 RepID=UPI000038E019 Length = 507 Score = 278 bits (712), Expect = 3e-73, Method: Composition-based stats. Identities = 113/541 (20%), Positives = 196/541 (36%), Gaps = 94/541 (17%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA------------- 47 + NDLV + D +R + +Y + LLF+K + +E Sbjct: 9 ITKNDLVKLVDNAADLIR----TSVDYK-YILVLLFIKRLSDRWKEEIEDAMSEIMEETG 63 Query: 48 -----------------EYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAV- 89 +PE W++++ + + + + + + + +K+L V Sbjct: 64 IDESEAAKRAVSNEFHSFMVPENVLWNNIR-KDRDKLTENMSRAINEIAKQNKELDGVVN 122 Query: 90 ---FHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGA 146 F + + T + L + D ++ N D GD YE +L + A E Sbjct: 123 RIDFIDFTKTRENRILLEQLFALFDKYNFSNKC--IEGDAMGDAYEHILMRFAPEKAKE- 179 Query: 147 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDF 206 G+ +TPR +++ ++ +L PQP V DPA G+ G LIEA +VKS+ D Sbjct: 180 GEVYTPREVVRLMVDILDPQPGMSVYDPACGSGGMLIEAYEHVKSRMG---------VDK 230 Query: 207 QIHRAFIGLELVPGTRRLALMNCLLHDI-EGNLDHGGAIRLGNTLGSDGENLPKAHIVAT 265 G E P T LA MN +LHDI E +L+ G ++ + G L V Sbjct: 231 ANRVGLYGEERSPTTYALAKMNTILHDISESHLEVGDSLLYPKFKTASG--LRHFDFVLA 288 Query: 266 NPPFGSAAG----------TNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVL 315 NPP+ + P +++H++ T + AV++ L Sbjct: 289 NPPWSQKGYGEDTLKQAEFKDRYAYGFVPQRYGDWAWIEHMLYTSK--SKVAVIMDQGAL 346 Query: 316 FEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDV 375 F IR+ ++D+ L ++ LP IFY G +L F K D V Sbjct: 347 FRSNSEKIIRQKIVDEKLLDSVTLLPEKIFYNTGAAGAILIFNKEKQEE------YRDKV 400 Query: 376 WVYDLRTNMPS---FGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADS 432 D K T++++ Y + ++V Sbjct: 401 LFIDASREYGKHPDMRKLNIITNDNIDRIVSAYKKFES------------IDGFSKVVSV 448 Query: 433 EENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGE 492 +E K D +L + + I S+DI+ ++ + L E + + E Sbjct: 449 DEIKEKDYNLNVTTFV------IPINNESSIDITGTIEELNGINTDLTEVEEKLNGYLKE 502 Query: 493 L 493 L Sbjct: 503 L 503 >UniRef50_C5ZY48 Type I restriction-modification system, M subunit n=1 Tax=Helicobacter canadensis MIT 98-5491 RepID=C5ZY48_9HELI Length = 499 Score = 278 bits (711), Expect = 3e-73, Method: Composition-based stats. Identities = 112/478 (23%), Positives = 206/478 (43%), Gaps = 52/478 (10%) Query: 6 LVAKLWKLCDNLR-DGGVS-YQNYVNELASLLFLKMCKETGQEAE------------YLP 51 + + ++ D LR D G+S +Y +++ +LFLK + +E + L Sbjct: 1 MQNTIDRITDILRRDDGISGAMHYSEQISWILFLKFLDDYERELKDEAFLNDVPYASILD 60 Query: 52 EGYRWDDLKS------------RIGQEQLQFYRKMLVHLGEDDKK---------LVQAVF 90 Y W + G + L+F L + K + +F Sbjct: 61 SQYAWQSWAAPKKDGKLDVKNALSGSDLLEFVNNELFPYLKSFKNNEDFKSIAYKIGGIF 120 Query: 91 HNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYF 150 + I + +++ +D L + + GD+YE LL+ ++ +G+++ Sbjct: 121 EFIDNRIANGHTLREVINLIDELSF---SKESDVFALGDVYEKLLKDMGSD-GGNSGEFY 176 Query: 151 TPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVK---SQTNDLDDLDGDTQDFQ 207 TPR L+K ++ ++ P+P+E + DPA G+ GFL+E+ ++ +L + +F Sbjct: 177 TPRALVKVMVEVINPKPKERIYDPACGSCGFLVESFLHILYEDRAKGQKANLSVEELEFL 236 Query: 208 IHRAFIGLELVPGTRRLALMNCLLHDIE-GNLDHGGAIRLGNTLGSDGENLPKAHIVATN 266 A G E P + + +MN +LH I+ N+ + T D + ++ N Sbjct: 237 QKDALFGKEKTPLSYAMGVMNMILHGIKSPNIIKTNTLSKRIT---DITESERYEVILAN 293 Query: 267 PPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLF-EGGKGTDIR 325 PPFG I F+ P++ +L F+QHI+++L GR A++VP+ VLF ++ Sbjct: 294 PPFGGKEKEQIQGNFIVPSNATELLFLQHILKSLKTNGRCAIIVPEGVLFQNSNAFVKVK 353 Query: 326 RDLMDKCHLHTILRLPTGIFYAQG-VKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNM 384 +DL++ +L +L LP+G+F VKTNVLFF+KG ++ +V+ Y+L Sbjct: 354 QDLIENYNLECVLSLPSGVFLPYSAVKTNVLFFSKGLRGIVDE---QDSNVYYYEL-IPP 409 Query: 385 PSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHL 442 K P H + F Y + A +++ N ++ L Sbjct: 410 YKLTKNKPLEYVHFKEFLECYKQRKITPHSYLVSLEELKARNYDLSAKNPNTKEEKSL 467 >UniRef50_B0S3L0 Type I restriction-modification system DNA methylase n=2 Tax=Bacteria RepID=B0S3L0_FINM2 Length = 579 Score = 278 bits (711), Expect = 4e-73, Method: Composition-based stats. Identities = 107/580 (18%), Positives = 199/580 (34%), Gaps = 80/580 (13%) Query: 4 NDLVAKLWKLCDNLRDGG-VSYQNYVNELASLLFLKMCKETGQE---------------- 46 +L LW D LR ++ Y + L+FL+ ++ Sbjct: 7 KELKDTLWHSADVLRASAHLAANKYGQPILGLIFLRYADILYKQHKEEIEAEYNRLKGGR 66 Query: 47 -------------AEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNV 93 YLPE +D + K + ED+ + V Sbjct: 67 MEKSIKEISIEKCGFYLPECAYYDFINDAPDDANKATLVKKAMEAIEDENPKMDGVLPKE 126 Query: 94 STTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153 P++ L+SN+ + + + + D FG++YE L A G ++TP Sbjct: 127 VYAQLVPEEEPELLSNIVRI-FKDIPENSTIDIFGEIYEYFLGNFALAEGKDGGTFYTPA 185 Query: 154 PLIKTIIHLLKPQPREV-VQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAF 212 +++ ++ +L PQP E DPA G+ G ++A RY+ + + Q+ Sbjct: 186 TVVRYMVEVLNPQPGEKKFLDPACGSGGMFVQAARYMHNHNAS--------ESEQMKFRC 237 Query: 213 IGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSA 272 G+E P T +LA MN LL+++ G++ + + V NPPF Sbjct: 238 YGVEKEPDTVKLAKMNLLLNNVRGDITEANS-----FYSDPYNAYGQFDYVMANPPFNVD 292 Query: 273 A-------GTNITRTFVHPTS----------------NKQLCFMQHIIETLHPGGRAAVV 309 N T+ P + N ++ + L+ G+AA+V Sbjct: 293 EVVVEKVSDDNRFNTYGVPRNKSKSKKKKSDKKETVPNANYLWIGYFATALNEKGKAALV 352 Query: 310 VPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDK 369 + ++ G DIR+ ++++ + ++ LP+ +F + + + FF K + Sbjct: 353 MANSASDASGSEYDIRKKMIEEGIISQMVTLPSNMFSSVTLPATLWFFDKQKPNTDKK-- 410 Query: 370 NCTDDVWVYDLRTNMPSFGK-RTPFTDEHLQP---FERVYGEDPHGLSPRTEGEWSFNAE 425 +++ D R + F+DE ++ ++Y + L + + A Sbjct: 411 ---NEILFIDARNVFTQVDRAHRKFSDEQIKNLGVITKLYHGNAQALVDLIDEYKAELAN 467 Query: 426 ETEVADSEENKNTDQHLATSRW--RKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPD 483 E +D +E A W +F + ID D Sbjct: 468 APESSDDKEVLTKSYWQAQIDWLTERFPNGEYADVIGLCKAAPMDGEDGIIDQDYSLNAG 527 Query: 484 VLAAEAMGELVQALSELDALMRELGASDEA-DLQRQLLEE 522 + + E M L A A + + LEE Sbjct: 528 RYVGVVIEDDGLTQEEFKEEMYSLNAEFAALSAEAKTLEE 567 >UniRef50_C6WNK0 N-6 DNA methylase n=5 Tax=Actinomycetales RepID=C6WNK0_ACTMD Length = 670 Score = 278 bits (710), Expect = 4e-73, Method: Composition-based stats. Identities = 93/525 (17%), Positives = 167/525 (31%), Gaps = 95/525 (18%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK--------------ETGQEA 47 + +L W + D LR G +Y + L+ + E + Sbjct: 5 KHTELANHAWSVADLLR-GDYKQSDYGKVILPFTVLRRLECVLTPTKDKVLETAERFADR 63 Query: 48 EYLPEGYRWD------------DLKSRIGQEQ--LQFYRKMLVHLGEDDKKLVQAV-FHN 92 E P+ + LK+ G ++ + L + +++++ F Sbjct: 64 EMDPDRFLRKASGHSFYNTSTYTLKAIAGDATHAAKYLNEYLGAFSPNAREVLERYEFAQ 123 Query: 93 VSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTP 152 + + ++ LD + G ++E L+++ A ++ AG++FTP Sbjct: 124 QVKKLDAADLLYQVLGRFADLDLR--PEVVTNHQMGYIFEELIRRFAEQSNETAGEHFTP 181 Query: 153 RPLIKTIIHLLK---------PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDT 203 R +I ++ LL P V DPA GT G L A+ + D Sbjct: 182 REVIDLMVKLLIAPDSDVLSVPGAVRTVLDPACGTGGMLSAAEEEITKHNKDAT------ 235 Query: 204 QDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIV 263 G EL P + + + ++ + I+ GN+ D V Sbjct: 236 ------VKVFGQELNPESWAICRSDMMIKGQDPE-----NIKFGNSFSDDSHAHATFDYV 284 Query: 264 ATNPPFGSAAGT---------------NITRTFVHPTSNKQLCFMQHIIETLHP------ 302 NPPFG + ++ L F+QH+I + P Sbjct: 285 LANPPFGVDWKKVQETVEREHKMLGESGRFGAGLPRINDGSLLFLQHMISKMKPVDVDGK 344 Query: 303 -GGRAAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFT 358 G R A+V + LF G + IRR +++ L I+ LP +FY G+ T + Sbjct: 345 GGSRVAIVFNGSPLFTGAADSGESKIRRWILENDWLEGIVALPDQLFYNTGIFTYFWIVS 404 Query: 359 KGTVANPNQDKNCTDDVWVYDLRTNMPS-----FGKRTPFTDEHLQPFERVYGEDPHGLS 413 K V + D R KR ++ + R+Y E L Sbjct: 405 NRKS------KGRQGKVVLLDARDYWQKMRKSLGDKRKMINEQQISEITRLYTEALAILD 458 Query: 414 PRTEGEWSFNAEETEVADSEENKNTDQ-HLATSRWRKFSREWIRT 457 + + N++ + R K + Sbjct: 459 AEKNDQMHDLRNKGRKIKLFRNEDFGYRRITVERPLKLRFKVTEE 503 >UniRef50_A6TVC2 N-6 DNA methylase n=4 Tax=Bacteria RepID=A6TVC2_ALKMQ Length = 897 Score = 277 bits (709), Expect = 6e-73, Method: Composition-based stats. Identities = 106/566 (18%), Positives = 212/566 (37%), Gaps = 66/566 (11%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQ----EAEYLPEGYRW 56 + ++L + LW+ C+ LR GGV Y + + LLF K + + + EG + Sbjct: 3 VKKSELYSLLWEACNKLR-GGVEPSRYKDYVLVLLFFKYVSDRYKGQRFAEFTVNEGASF 61 Query: 57 DDLKSRIGQ-EQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEP--------KQITALV 107 +DL + G+ + + K++ E+++ +Q +VS + +++ L+ Sbjct: 62 EDLIAAKGKSDVGERVDKIIQKFLEENR--LQGSLPDVSFNNPDELGSGKELVDKVSGLI 119 Query: 108 SNMDSLDW-YNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQ 166 + + + D GD YE + K A E+ GQ++TP + + I L+ Sbjct: 120 AIFQNPAIDFKSNRASGDDIIGDAYEYFMMKFAQESGKSKGQFYTPSEVSRIIARLIGIG 179 Query: 167 -------PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVP 219 + + DPAAG+ LI A +D + G E P Sbjct: 180 DIKQETGKKWTLHDPAAGSGSLLIRAADE-----------APTDEDGNSIVSIYGQEKYP 228 Query: 220 GTRRLALMNCLLHD-IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTN-- 276 T LA MN +LH+ G + + D L K + NPPF T+ Sbjct: 229 DTAGLAKMNFILHNKGTGEIKSANTLANPA-YKDDFGGLRKFDFIVMNPPFSDKDWTDGI 287 Query: 277 ---------ITRTFVHPTSNKQLCFMQHIIETL-HPGGRAAVVVPDNVLFEGGKGTDIRR 326 + P N + H+++ L G+A +++P VL IR+ Sbjct: 288 KPSEDKFKRFDGYGIPPEKNGDYAWFLHVLKALDSQRGKAGIILPHGVLSRPNAEETIRK 347 Query: 327 DLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPS 386 ++DK ++ I+ LP +FY G+ ++ K +++ + Sbjct: 348 AVLDKRYIKGIVGLPANLFYGTGIPACIIIIDKEDADKREG-------IFMINASRGFKK 400 Query: 387 FGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLA-TS 445 G + ++ ++ + + EG F + + +E N N +++ Sbjct: 401 DGNKNRLREQDIEKIVQTFINKEE-----IEGYSKFVTYKEILEQNEGNLNVPRYIQKID 455 Query: 446 RWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEA--MGELVQALSELDAL 503 + +DI+ ++ I E E + LV + +E++ + Sbjct: 456 DTLPQNIASHLKGGIPEIDINSIEKLWRISPALKKEIFTCVDEKHNVYNLVMSPNEIETV 515 Query: 504 MRELGASDEADLQRQLLEEAFGGVKE 529 + E + + +++ + E FG ++ Sbjct: 516 ISE-DENIKNEIENE-CGELFGTWRD 539 >UniRef50_C7BP30 Type I restriction enzyme, modification subunit n=3 Tax=Bacteria RepID=C7BP30_PHOAA Length = 721 Score = 277 bits (709), Expect = 7e-73, Method: Composition-based stats. Identities = 103/570 (18%), Positives = 191/570 (33%), Gaps = 113/570 (19%) Query: 3 NNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQ---------------EA 47 +L ++W + +++R G V ++ + LF + E + Sbjct: 7 RAELHRQIWAIANDVR-GSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSIHYAALDD 65 Query: 48 EYLPEGYRWDDLKSR------------------IGQEQLQFYRKMLVHLGEDDKKL---- 85 + + + D +K++ + V + Sbjct: 66 SIITDDIKDDAIKTKGYFIYPSQLFCNVAAKASTNDRLNADLNSIFVAIESSAYGYPSEA 125 Query: 86 -VQAVFHNVSTT--------ITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQ 136 ++ +F + TT + ++ A++ ++ L N + D FGD YE L+ Sbjct: 126 DIKGLFADFDTTSNRLGNTVKDKNSRLAAVLKGVEGLKLGNFNDHQ-IDLFGDAYEFLIS 184 Query: 137 KNANETKSGAGQYFTPRPLIKTIIHLLKPQPRE--VVQDPAAGTAGFLIEADRYVKSQTN 194 A G++FTP+ + K I L + DPAAG+ L++A ++ + Sbjct: 185 NYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTHVNKIYDPAAGSGSLLLQAKKHFDNHI- 243 Query: 195 DLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDG 254 I F G E+ T LA MN LH+I + IRLGNTL Sbjct: 244 -------------IEEGFFGQEINHTTFNLARMNMFLHNINYDKF---DIRLGNTLTEPH 287 Query: 255 ENLPK-AHIVATNPPFGSAAGTNI------TRTFVH-----PTSNKQLCFMQHIIETLHP 302 K + +NPP+ + F P S F+ H + L Sbjct: 288 FGDEKPFDAIVSNPPYSVKWIGSDDPTLINDERFAPAGVLAPKSKADFAFVLHALNYLSA 347 Query: 303 GGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTV 362 GRAA+V + + GG IR+ L+D ++ T++ L +F+ + N+L +K Sbjct: 348 KGRAAIVCFPGIFYRGGAEQKIRQYLVDNNYVETVISLAPNLFFGTTIAVNILVLSKHKT 407 Query: 363 ANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSF 422 V D TD H+ +V+ S Sbjct: 408 DTS---------VQFIDASGLFKKETNNNILTDAHIAQIMQVF------------SSKSD 446 Query: 423 NAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEP 482 + E+ D +L+ S + + + +DI+ L + + + Sbjct: 447 VDHLAKSVAFEQVAGNDYNLSVSSYVE------AKDTREIVDITELNAELKTTVSKIDQL 500 Query: 483 DVLAAEAMGEL-------VQALSELDALMR 505 + E+ + L+ L+ L+ Sbjct: 501 RKDIDAIVAEIGGSEDAGISGLNYLEKLLD 530 >UniRef50_B7KLE1 N-6 DNA methylase n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7KLE1_CYAP7 Length = 503 Score = 277 bits (707), Expect = 9e-73, Method: Composition-based stats. Identities = 128/485 (26%), Positives = 213/485 (43%), Gaps = 57/485 (11%) Query: 2 NNNDLVAKLWKLCDNLRDGG-VSYQNYVNELASLLFLKMCKETGQE------------AE 48 L + + +CD +R YV EL+ +LFLK+ +T Q + Sbjct: 12 TQQGLNSYIKNICDIMRRSNCAGALQYVPELSWILFLKILDDTEQREAEEAEAVGDRFDD 71 Query: 49 YLPEGYRWDDLKSRIGQEQLQ-----------FYRKMLVHLGEDDK---------KLVQA 88 + E YRW D + G ++L+ F ++ + K K++ Sbjct: 72 SIAEPYRWRDWAAPQGTQRLKLQMGEMGKFIPFVNDEVIPYLKGLKDKPRATPRQKIISE 131 Query: 89 VFHNVS-TTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAG 147 V NV I + ++ + +D+ + H +YEGLL K + G Sbjct: 132 VMSNVERVRIDSEANLLDILDKVHEIDYIDTTHIFP---ISQVYEGLLLKMGE-KNNDGG 187 Query: 148 QYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQ 207 Q+FTPR +++ +I ++ P+ E + DPA GT GFL ++ Y++ D D+ + + Sbjct: 188 QFFTPREIVRAMIKIINPKVGEKIYDPACGTGGFLAQSYEYIRDNLGD--DITPEQLEPL 245 Query: 208 IHRAFIGLELVPGTRRLALMNCLLHDIE-GNLDHGGAIRLGNTLGSDGENLPK-AHIVAT 265 F G E +AL N +LH I+ +L HG + T G ++ P I+ T Sbjct: 246 KLNTFYGREKENLIYPIALANLVLHGIDLPHLWHGNTLNGEVTYGDLFKDAPPLFDIILT 305 Query: 266 NPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDI- 324 NPPFG + F + TS Q+ F+QH+I++L PGGR +V+ + VLF + + Sbjct: 306 NPPFGGKEHKTVQAQFDYKTSATQVLFLQHVIKSLAPGGRCGIVLDEGVLFRTNEKAFVQ 365 Query: 325 -RRDLMDKCHLHTILRLPTGIFYAQ--GVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLR 381 +R L++ C+L+ I+ LP G F A GVK N+LFF+KG T+ +W YDL Sbjct: 366 TKRKLLNDCNLYCIISLPAGTFKAAGGGVKANILFFSKGEP---------TEKIWYYDLS 416 Query: 382 TNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQH 441 S KR P + F +++ T A+ ++ N + + Sbjct: 417 DI--SVTKRKPLNLSDFEEFFKLFPSREESDKSWTITREEIEAKNFDLKAVNPNAQSFED 474 Query: 442 LATSR 446 +T + Sbjct: 475 KSTPK 479 >UniRef50_C9NJI6 N-6 DNA methylase n=1 Tax=Streptomyces flavogriseus ATCC 33331 RepID=C9NJI6_9ACTO Length = 461 Score = 276 bits (706), Expect = 1e-72, Method: Composition-based stats. Identities = 100/505 (19%), Positives = 181/505 (35%), Gaps = 56/505 (11%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLK 60 M + + K D LR G + Q+ L +++FL+ + + +W L Sbjct: 1 METTEYSQVVGKALDKLR-GPLDIQDAQQLLLAVIFLRCVSDIPA-GGASGDRPQWRQLA 58 Query: 61 SRI-----GQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDW 115 E ++ L + + ++ + + ++ +D Sbjct: 59 ELGSSLAGDHELTWALKQALDAWTSSYLDGGRPMSESIPDHLVAGPLLREVLGLVDR--- 115 Query: 116 YNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPA 175 D ++YE L++ +N G YFTPR L++ ++ +L P+ E V DPA Sbjct: 116 --------ADRLVELYEECLERFSN--NKKGGNYFTPRHLVRLLVEMLAPRQGEQVFDPA 165 Query: 176 AGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE 235 G+ GFL+E+ RYV+ + +G ++ P R++A MN +E Sbjct: 166 CGSGGFLVESARYVQEHGGSSAAVG-----------LVGRDINPRARQVAWMNLTARGLE 214 Query: 236 GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTN------ITRTFVHPTSNKQ 289 +L N+L +D +V NPPF + R P SN Sbjct: 215 ADLGSRPV----NSLWADDTPAGAFDVVFVNPPFNLKLARDDLRYDSRWRYGEPPRSNAN 270 Query: 290 LCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQG 349 ++QH++ L GRAA+++PD F G IRR L+ + ++ LP G+F Sbjct: 271 FAWIQHVVSKLTTRGRAAMLLPDGATFTSGAAAGIRRGLVADDLVSAVVALPAGLFPHTS 330 Query: 350 VKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGK-RTPFTDEHLQPFERVYGED 408 + + F++ A V D R G+ R ++ ++ Y Sbjct: 331 ISASAWIFSREKPAE------RRGQVLFVDARKQGNLVGRGRRTLSEGAIESIADTYRSW 384 Query: 409 PHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWL 468 + A EE + +L R+ E +S ++ L Sbjct: 385 YA-------ESYQDRPGWCRSATVEEIAAQEFNLQAVRYVGAPAE-APAPQSAEQRVAEL 436 Query: 469 KDKDSIDADSLPEPDVLAAEAMGEL 493 + + + +GEL Sbjct: 437 TRELYGHFADAARLETEIRDILGEL 461 >UniRef50_A6TNL6 Type I restriction-modification system, M subunit n=5 Tax=Firmicutes RepID=A6TNL6_ALKMQ Length = 858 Score = 276 bits (705), Expect = 2e-72, Method: Composition-based stats. Identities = 105/580 (18%), Positives = 195/580 (33%), Gaps = 121/580 (20%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAE------------ 48 + + ++ +LW+ + LR G + Y + + L+F K + E Sbjct: 2 ITSEEIKRRLWEGANELR-GSMDASRYKDYMLGLMFYKFLSDKTLETFRITAGVEKVTEK 60 Query: 49 ---------------------------YLPEGYRWDDLKSRIGQEQL--QFYRKMLVHLG 79 Y+ Y + I Q L + Sbjct: 61 ELVEEYIKAKKEYGEALEKMIQDVLGYYVSPEYLYQIWLKDINDGNFEVQKVADSLNNFE 120 Query: 80 ED-----DKKLVQAVFHNVSTTITE----------PKQITALVSNMDSLDWYNGAHGKSR 124 + + +F + + +T+ I AL+ L N + Sbjct: 121 RSIVSSGEVNDFKGLFSSSTLDLTDTALGSNLHERSNNIKALILLFSDL---NMVALQKG 177 Query: 125 DDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL-KPQPREVVQDPAAGTAGFLI 183 D GD YE L+ + A E+ AG+++TP + + + ++ K + + DP G+ L+ Sbjct: 178 DILGDAYEYLIGQFAMESGKKAGEFYTPHRVSEVMAQIVAKTTEIKSIYDPTVGSGSLLL 237 Query: 184 EADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA 243 +++ ++D Q ++ G E T L MN LLH + Sbjct: 238 TVKKHL-------------SKDRQKDLSYYGQEKNTATYNLTRMNLLLHGVRPEKM---T 281 Query: 244 IRLGNTLGSDGENLP-------KAHIVATNPPFGSAAG--------TNITRTF--VHPTS 286 I+ G+TLG+D P + V NPP+ + + P S Sbjct: 282 IKNGDTLGNDWPEDPENPNEGVQFDAVVMNPPYSAQNWNKAGLKVSDPRFEIGGTLPPDS 341 Query: 287 NKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFY 346 F+ H + L G +V+P VLF G +IR+ L+DK + ++ LP+ +F Sbjct: 342 KGDYAFLLHGLYHLGTKGTMGIVLPHGVLFRGSSEGEIRKKLIDKNQIDAVIGLPSNLFT 401 Query: 347 AQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYG 406 G+ ++ K +N +D V + D N GK+ + + VY Sbjct: 402 NTGIPVAIIILKKN--------RNISDPVLMIDASNNFIKVGKQNVLQERDIAQIVDVYI 453 Query: 407 EDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSL--- 463 A + +A +E + ++ R+ + E I L Sbjct: 454 S------------KDEIAGFSHLACLKEIIQNEYNMNIPRYVQSLEEDIAHDVDAHLFGG 501 Query: 464 ----DISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSE 499 +I+ LK + + L + L ++ E Sbjct: 502 IPAENINELKILHELVPEVLEQSIEEIRPGYVRLKNSIKE 541 >UniRef50_C0W5F1 Type I restriction-modification system methyltransferase subunit n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W5F1_9ACTO Length = 687 Score = 276 bits (705), Expect = 2e-72, Method: Composition-based stats. Identities = 90/561 (16%), Positives = 169/561 (30%), Gaps = 97/561 (17%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKET------------------ 43 + V+ +WK+ + LR G Y + + L Sbjct: 10 KTTNYVSFIWKIANLLR-GDYKEHEYGDVILPFTVLTRLDSVLVDTKTDVLAIRDQKGVP 68 Query: 44 -----------GQEAEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAV-FH 91 + + LK+ R + + + ++++ F+ Sbjct: 69 AEVKRIQYARATGYPFWNASRFTLHTLKN-DPDNLEGNLRSYVEGFSRNARDVLKSYDFY 127 Query: 92 NVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFT 151 V + + +V S +D G ++E L+++ + AG++FT Sbjct: 128 TVIDRLDRSDLLYQIVDAFTDPAVDFSPAAVSNEDMGSIFEELIRRFNELSNETAGEHFT 187 Query: 152 PRPLIKTIIH---------LLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGD 202 PR +I+ ++ + +P + DP GT G L A Sbjct: 188 PREVIQLMVEVLFGPDMNAICEPGFMASLYDPGVGTGGMLSAAIERAHELNEGA------ 241 Query: 203 TQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHI 262 G EL P T +A + L+ + I GN+L +D + Sbjct: 242 ------RIEVYGQELNPQTYAVAKSDILIKGDDAER-----IYFGNSLTADRTAGRTFNY 290 Query: 263 VATNPPFGSAA---------------GTNITRTFVHPTSNKQLCFMQHIIETLH------ 301 + NPPFG + S+ F+QH+I + Sbjct: 291 MLCNPPFGVEWKKYADPIKDEAEKRGWKGRFGAGLPRISDGSFLFLQHMISKMKPYDPAD 350 Query: 302 ----PGGRAAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNV 354 PG R +V + LF G ++IRR +++ L I+ LP +FY G+ T V Sbjct: 351 IQNAPGTRIGIVFNGSPLFTGSAGQGESNIRRWILENDWLEAIIALPDQMFYNTGILTYV 410 Query: 355 LFFTKGTVANPNQDKNCTDDV-WVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLS 413 + + D +R + KR T++++ R+YG+ Sbjct: 411 WVLSNRKASIRKNKVQLIDATGLFARMRKPLGE--KRKYLTEDNIAQIARIYGDFTEDEH 468 Query: 414 PRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDS 473 + F E E + R E + + K + Sbjct: 469 SKIFDTCEFGFHE---VTVERPLRLNFTATPER-----IERLWEQTPFKNLATSKKRSEP 520 Query: 474 IDADSLPEPDVLAAEAMGELV 494 + + + + L Sbjct: 521 ARSQEIKDGKKTQQAIIDTLE 541 >UniRef50_B2VGL9 Type I restriction-modification system, M subunit n=1 Tax=Erwinia tasmaniensis RepID=B2VGL9_ERWT9 Length = 494 Score = 276 bits (705), Expect = 2e-72, Method: Composition-based stats. Identities = 98/529 (18%), Positives = 184/529 (34%), Gaps = 78/529 (14%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEY----------- 49 ++ + + + + R G + ++ + SL+FLK + + Sbjct: 5 VDEKETKKIISDIFNIFR-GRLDAIQCLDYIISLIFLKYISDLICDINEDRVSDNDLRLK 63 Query: 50 -----LPEGYRWDDLKSRIGQEQL-QFYRKML----VHLGEDDKKLVQAVFHNVSTTITE 99 +P+G + + S I + + L + + K +F ++ T Sbjct: 64 ELLSNVPKGMSFYSISSEINHGGIGERINTALSCYDEAIFQSLYKCDSRIFSDIDFTSDR 123 Query: 100 -------PKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTP 152 ++ L+ +S ++ + D + L +K A+E G ++TP Sbjct: 124 LGPARGRDAFLSELMHIFNSREFQFNYYNDGADRISLICSILFEKTASEAGLRGGDFYTP 183 Query: 153 RPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAF 212 + + L+ P+ + + DPA GT L+ A + + + Sbjct: 184 HGVSALLSELVSPRAGDSIYDPACGTGSLLLSAVHKI------------PYIEKCQNHNV 231 Query: 213 IGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSA 272 G E++ + +A +N LH + G + + L K +V +NPPF + Sbjct: 232 YGQEIIKVSWNIAYINMFLHGVYSCKIKWGDVFQNPQFKNSKSELAKFDVVLSNPPFSMS 291 Query: 273 AGTN---------ITRTFVHPTSNKQLCFMQHIIETLHPG-GRAAVVVPDNVLFEGGKGT 322 N V P S F+ H+I +L GR AVVVP VLF G Sbjct: 292 NWGNKEALSDRFGRFAMGVPPQSKADYAFILHMIASLKDDTGRMAVVVPHGVLFRGANEA 351 Query: 323 DIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRT 382 IR +L+ + L ++ LP +F + + T +L F K +V D Sbjct: 352 LIRMNLIKENLLDAVIGLPERLFLSTNISTAILIFRKNK---------MDSNVLFIDSTI 402 Query: 383 NMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHL 442 + R T EH++ + + E + VA E ++ D ++ Sbjct: 403 LFENSKGRNYITGEHIKRILKAFHERQD------------VCNISHVACLSEIEHNDYNI 450 Query: 443 ATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMG 491 +R+ K E +D+ L DK L + +G Sbjct: 451 NITRYVKRVEE------IQDIDLYSLIDKQEELLAELHYLEKEMKSYIG 493 >UniRef50_A3D8X6 Type I restriction-modification system, M subunit n=22 Tax=Bacteria RepID=A3D8X6_SHEB5 Length = 547 Score = 275 bits (703), Expect = 3e-72, Method: Composition-based stats. Identities = 100/576 (17%), Positives = 189/576 (32%), Gaps = 123/576 (21%) Query: 4 NDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEA---------------- 47 NDL LW + D+LR G ++ ++ + + S LFL+ + ++A Sbjct: 7 NDLGKILWDIADSLR-GAMNADDFRDYMLSFLFLRYLSDNYEKAAQKELGRDYPILAKDD 65 Query: 48 ----------EYLPEGYRWD---------------------DLKSRIGQEQLQFYRKMLV 76 EY + ++ +L E LQ Sbjct: 66 KTAPLALWYTEYREDIAEFEKQMRRKLHYVIEPRHLWTSIAELARTQNSELLQTLEAGFK 125 Query: 77 HLGE-DDKKLVQAVFHNVSTTITE-----PKQITALVSNMDSLDWYNGAHGKSRDDFGDM 130 ++ E + +F ++ + + L + + + D GD Sbjct: 126 YIEEQSFDSSFKGLFSEINLNSEKLGKSPTDRNKKLCTIIQKISEGIAEFSTDSDILGDA 185 Query: 131 YEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPRE----------VVQDPAAGTAG 180 YE L+ + A + AG+++TP+P+ + ++ +E V D A G+ Sbjct: 186 YEYLIGEFAAGSGKKAGEFYTPQPISTILSEIVTLDSQEPKTGKKKKLDKVLDFACGSGS 245 Query: 181 FLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI---EGN 237 L+ +++ + G E T LA MN LLH + E Sbjct: 246 LLLNVRKHIVDAGGTVGK-------------IYGQEKNITTFNLARMNMLLHGVKDTEFE 292 Query: 238 LDHGGAIRLGNTLGSDGENLPK--AHIVATNPPFGSAAG--------TNITRTFVHPTSN 287 + HG + + S+ K V NPPF + P S Sbjct: 293 IHHGDTLLNDWDILSEMNPAKKLKCDAVVANPPFSYRWDPSEAQGEDFRFKSHGLAPKSA 352 Query: 288 KQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYA 347 F+ H L G A+++P VLF GG IR+ L++ H+ T++ LP +F++ Sbjct: 353 ADFAFLLHGFHFLSDEGTMAIILPHGVLFRGGAEQRIRKKLLNDGHIDTVIGLPANLFFS 412 Query: 348 QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTD------EHLQPF 401 G+ ++ K DD+ + + ++ + ++ Sbjct: 413 TGIPVCIIVLKKCKKY---------DDILFINASEHYEKGKRQNKLREGKGDEPNDIKKI 463 Query: 402 ERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSD 461 Y S + + E + D +L SR+ + Sbjct: 464 VETYQYR------------SEDERYSRRVSMAEIEKNDFNLNISRYVST------AKDTV 505 Query: 462 SLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQAL 497 +D++ + K S+ + + + EL AL Sbjct: 506 KIDLAKEQRKLVDIESSITSALIEHNKFLSELGLAL 541 >UniRef50_B3EKI4 N-6 DNA methylase n=1 Tax=Chlorobium phaeobacteroides BS1 RepID=B3EKI4_CHLPB Length = 775 Score = 274 bits (700), Expect = 6e-72, Method: Composition-based stats. Identities = 102/501 (20%), Positives = 211/501 (42%), Gaps = 53/501 (10%) Query: 3 NNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEY----------LPE 52 N D + L + + ++++ + L K + Q A E Sbjct: 2 NTDTKRHIDSARQVLVGVVPNPTSQIDQITNALIYKFMDDMDQAAIKAGGSPSFFVDDLE 61 Query: 53 GYRWDDLKSR--IGQEQLQFYRKMLVHLGEDD--KKLVQAVFHNVSTTITEPKQITALVS 108 Y W L + QE++ Y + L+ + +L + +F + P+ + + Sbjct: 62 NYAWTRLMDQRIGNQERMNLYSEALIKFSQAKQLPELFRGIFKSAFLPYRSPETLGLFLK 121 Query: 109 NMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPR 168 +D D+ + ++ G+ YE LL +++ AGQ+ TPR +I I+ ++ P Sbjct: 122 EIDYFDYSH------PEELGNAYEYLLSIMSSQ--GDAGQFRTPRHIIDFIVDVVNPTKA 173 Query: 169 EVVQDPAAGTAGFLIEADRYVKSQTNDLDDLD------GDTQDFQIHRAFIGLELVPGTR 222 + V DPA GT GFL+ + +++ Q + DD + ++ F G ++ P Sbjct: 174 DKVLDPACGTGGFLVSSYKHILEQHDGKDDPKKKEKPLTPDERKKLMTNFEGYDIDPTMV 233 Query: 223 RLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPP-FGSAAGTNITRTF 281 R+A +N LH I ++L S+ K ++ NPP G F Sbjct: 234 RIAQVNMYLHQ-----FKNPKIFQYDSLSSEERWNDKFDVILANPPFMSPKGGIKPHSKF 288 Query: 282 VHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGG-KGTDIRRDLMDKCHLHTILRL 340 P+S ++ F+ +I+ L P GRA ++VP+ ++F+ G +R++L++ L+ ++ L Sbjct: 289 SIPSSRSEVLFVDYIMNHLRPKGRAGIIVPEGIIFQSGTAHKQLRKNLVEDG-LYAVVSL 347 Query: 341 PTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGK-RTPFTDEHL 398 P+G+F GVKT++L F + + ++ + + G + P + L Sbjct: 348 PSGVFAPYSGVKTSILLFNN-------ELAKTSTEILFVKIEQDGFDLGATKRPISKNDL 400 Query: 399 QPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFS-REWIRT 457 + + G + E + + E++++A+ N D +L+ R+R + + Sbjct: 401 PTALDILNKWNTGE--KVENKLAVYVEKSKIAE-----NGDYNLSGDRYRVATDYTNAKW 453 Query: 458 AKSDSLDISWLKDKDSIDADS 478 + ++++ + +I Sbjct: 454 PMVELVEVAEILKGSAITKKD 474 >UniRef50_A3RQ90 Type I restriction-modification system methylation subunit n=4 Tax=Ralstonia solanacearum RepID=A3RQ90_RALSO Length = 481 Score = 274 bits (700), Expect = 7e-72, Method: Composition-based stats. Identities = 115/498 (23%), Positives = 187/498 (37%), Gaps = 76/498 (15%) Query: 1 MNNNDLVAKLWKLCDNLRDGGV-SYQNYVNELASLLFLKMCKETGQEA------------ 47 M DL ++ +L D G+ + +L LL LK + A Sbjct: 1 MMTADLQRQVDRLWDAFCAEGIADPIEIIEQLTCLLCLKRQDDRHALAIHLARRTGQPPG 60 Query: 48 -------EYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGE---DDKKLVQAVFHNVSTTI 97 + RW ++ Q++ + D + ++ T+ Sbjct: 61 SDTRPVFREDQDTLRWSVFRTLNPQDRFDAMSTHGIPFLRALGDTDPVCGRHLRDIRFTM 120 Query: 98 TEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIK 157 P + +V +D++ + RD G +Y+ LL + G++ TPR +++ Sbjct: 121 PTPALLAKVVQQLDAIPLHR------RDVRGAVYDALLGRIPLV--GQGGRFHTPRHIVR 172 Query: 158 TIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLEL 217 ++ L +P P + + DPAAGT FL A Y++ + L D H F G E+ Sbjct: 173 FMVELTRPDPSDTLCDPAAGTGSFLAAAGEYLRREHPGLLH-DARQSVHFHHGMFHGYEI 231 Query: 218 VPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLG-SDGENLPKAHIVATNPPFGSAAGT- 275 R+ MN LLH +E G +R + L +D +V +PPF Sbjct: 232 DRAMLRIGSMNLLLHGVE-----GPDLRDHDALAPTDANEAGAYSLVLAHPPFTGDVDHG 286 Query: 276 --NITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGG-KGTDIRRDLMDKC 332 + T +L F+ + L PGGRAAV+VPD VLF G +RR L++ Sbjct: 287 SVDPDLLHRVRTRKAELLFLARCLHLLKPGGRAAVIVPDGVLFGSGLAHRTLRRMLVENH 346 Query: 333 HLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGK-R 390 L +++LP G+F G+ T +L FT+ D T VW YDLR + S Sbjct: 347 RLEGVIKLPAGVFRPYAGIGTAILLFTRT-------DTGGTGHVWFYDLRADGFSLDDPH 399 Query: 391 TPFTDEH-------------------LQPFERVYGEDPHGLSPRTEGEWSFNAEETEVAD 431 TP E L +G+ G SF + ++A Sbjct: 400 TPLLPEDQLGATPAAPLAPHDHARNNLPDALHRWGQREAGERGNPRSAQSFCVPKPDIAA 459 Query: 432 SEENKNTDQHLATSRWRK 449 L +R+++ Sbjct: 460 ------QGYDLTLNRYQE 471 >UniRef50_C4WKW1 Type I restriction enzyme EcoEI specificity protein n=1 Tax=Ochrobactrum intermedium LMG 3301 RepID=C4WKW1_9RHIZ Length = 865 Score = 273 bits (699), Expect = 8e-72, Method: Composition-based stats. Identities = 116/531 (21%), Positives = 200/531 (37%), Gaps = 71/531 (13%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYL---------- 50 M + D ++ D L ++ V ++ L K + EAE L Sbjct: 1 MLDPDTKRRIDTCRDILVGKVPDPKSQVEQITIALIYKFMDDMDLEAEELGGERRFFTKD 60 Query: 51 PEGYRWDDLKSR--IGQEQLQFYRKMLVHLGEDD--KKLVQAVFHNVSTTITEPKQITAL 106 E YRW L + GQ+ L Y + L ++ +++ KL + +F N +P+ + A Sbjct: 61 YERYRWAKLVAPGVSGQDMLNTYSEALTNMVQNEGLPKLFRDIFRNAYLPYRDPETLRAF 120 Query: 107 VSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQ 166 + ++S + + GD +E LL ++ AGQ+ TPR +I ++ ++ PQ Sbjct: 121 LREINSFTYDHSEK------LGDAFEYLLSVLGSQ--GDAGQFRTPRHIIDFMVEIINPQ 172 Query: 167 PREVVQDPAAGTAGFLIEADRYVKSQTND-------------------------LDDLDG 201 EV+ DPA GTAGFLI A +++ Q + DL Sbjct: 173 KNEVIMDPACGTAGFLISAYKHILKQNSTGVVNSNGASTEGDAAEQALESPMRYPGDLLQ 232 Query: 202 DTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAH 261 ++ R G ++ P RL+L+N LH + +TL S+ + A Sbjct: 233 PDDRARLARNIRGYDISPDMVRLSLVNLYLHG-----FADPKVEEYDTLTSEDKWTETAD 287 Query: 262 IVATNPP-FGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEG-G 319 ++ NPP G F + ++ F+ +I E L P GRAA+VVP+ ++F+ Sbjct: 288 VILANPPFMSPKGGIKPHTRFQVQSKRSEVLFVDYIAEHLTPNGRAAIVVPEGIIFQSQS 347 Query: 320 KGTDIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVY 378 +R+ L++ L ++ LP G+F GVKT++L + + V + Sbjct: 348 AYVALRKMLVENH-LAAVISLPAGVFNPYSGVKTSILILDRAVA-------KASQHVAFF 399 Query: 379 DLRTNMPSFGKRTP-FTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKN 437 + + + G + L + E N V E Sbjct: 400 KIENDGFALGAQRKAVKGSQLAQVKTELAAWLKAARAGGGKELESNVGFA-VERKELLAE 458 Query: 438 TDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAE 488 L+ R+ R + L D+ +S P E Sbjct: 459 GSITLSAERYLT------REIGKSGFPMVSLGDEALFKVESGGTPKSDVPE 503 >UniRef50_D2NT11 Type I restriction-modification system methyltransferase subunit n=1 Tax=Rothia mucilaginosa DY-18 RepID=D2NT11_9MICC Length = 569 Score = 273 bits (697), Expect = 1e-71, Method: Composition-based stats. Identities = 91/540 (16%), Positives = 183/540 (33%), Gaps = 95/540 (17%) Query: 3 NNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETG------------------ 44 L + +W++ ++LR G V ++ + +LF + E+ Sbjct: 50 RAQLHSTIWRIANDLR-GSVDGWDFKQYVLGMLFYRYLSESQARFIDENYTLKGPFVELK 108 Query: 45 --------------QEAEYLPEGYRWDDL--KSRIGQEQLQFYRKMLVHLGEDDKKL--- 85 + +L + ++ K+R Q + + E + Sbjct: 109 DEDCNEGGRQVVLRERGFFLLPSQLFSNVYAKARQDQNLNETLANVFKAFEESARGTESE 168 Query: 86 --VQAVFHNVSTTITE--------PKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLL 135 V+ +F + + + + L+ + ++ G D FGD YE L+ Sbjct: 169 ENVKGLFDDFVLDSNKLGVSPAARHENLLKLMDAVAGMNLGKGYEDSENDAFGDAYEYLM 228 Query: 136 QKNANETKSGAGQYFTPRPLIKTIIHLLKP----QPREVVQDPAAGTAGFLIEADRYVKS 191 A G+Y+TP+ + + + + V DPA G+ L++ R + Sbjct: 229 GMYAANAGKSGGEYYTPQEVSELLAKIAMDGRDADKIRSVYDPACGSGSLLLKFKRELGK 288 Query: 192 QTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI---EGNLDHGGAIRLGN 248 + L FIG E+ T L MN +LH + E ++ HG + Sbjct: 289 NSKGL--------------RFIGQEINLTTYNLCRMNMMLHGVPVDEFSIAHGDTLIDPK 334 Query: 249 TLG-SDGENLPKAHIVATNPPFGSAAGTNITRTF-----------VHPTSNKQLCFMQHI 296 + + + + +NPP+ + + T + P S L F H+ Sbjct: 335 HRNGKNPKFVEPFGAIVSNPPYSTKWKGDDDPTLKHDDRYAPAGVLAPKSKADLAFTMHM 394 Query: 297 IETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLF 356 +++LH G AA+V VL+ G IR L+ + + +++LP+ +FY + T +L Sbjct: 395 LKSLHEAGTAAIVEFPGVLYRSGAERTIREYLLIENRVDAVIQLPSNLFYGTSIATCILV 454 Query: 357 FTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRT 416 KG + + V D + H + V Sbjct: 455 LKKGRRKDHS--------VLFVDASALFDKGKNQNILGKSHREKILDVLATREEREH--- 503 Query: 417 EGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDA 476 +S ++ + E N + R+ ++ +++ + + IDA Sbjct: 504 ---FSALVPVQKLLEQEANLAVSSWVEPEDTRERVDIVELNSRIENIVARQAQLRVEIDA 560 >UniRef50_B7K553 N-6 DNA methylase n=13 Tax=cellular organisms RepID=B7K553_CYAP8 Length = 676 Score = 272 bits (696), Expect = 2e-71, Method: Composition-based stats. Identities = 88/569 (15%), Positives = 191/569 (33%), Gaps = 87/569 (15%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK---ETGQE------------ 46 N + V+ +W + D +R Y + + L+ E +E Sbjct: 3 NFGEKVSFIWSVADLIR-DSFKRGKYQDVILPFTVLRRLDCVLEPTKEQVLEAYHKYHGK 61 Query: 47 --------------AEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAV-FH 91 A Y Y + L + +K + + +++++ F Sbjct: 62 LENLDPILCKQSGFAFYNASNYDFGKLIDDPK-DLGANLKKYINSFSSNMREVLEKFDFP 120 Query: 92 NVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFT 151 N + E + ++ ++D + S + G ++E L++K G++FT Sbjct: 121 NTIDKLEEADLLFQVMEKFKTIDLH--PDKVSNLEMGYIFEELIRKFNEALDENPGEHFT 178 Query: 152 PRPLIKTIIHLLKPQPRE---------VVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGD 202 PR +I+ ++ LL Q ++ + DP G+ G L A + + Sbjct: 179 PREVIRLMVSLLLSQDKDSLKQAHITRTIYDPCCGSGGMLTIAKERILELNPNAT----- 233 Query: 203 TQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHI 262 G E+ P T + + + +G I+ G+TL +D + Sbjct: 234 -------VFLFGQEVNPETFAICKSDLYMKSEDG--KDADNIKFGSTLSNDQHSDKSFDY 284 Query: 263 VATNPPFGSAAGTN-------------ITRTFVHPTSNKQLCFMQHIIETLHP----GGR 305 + NPP+G + S+ QL F+Q ++ + G R Sbjct: 285 LLANPPYGKDWKRDKDAVETEAQKTGSRFSAGTPRISDGQLLFLQQMLARMKSPENGGSR 344 Query: 306 AAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTV 362 A+V+ + LF G ++IRR +++ L I+ LP +FY G+ T + + + Sbjct: 345 VAIVMNGSPLFTGDAGSGESEIRRWILENDWLEAIIALPEQLFYNTGISTYIWILSNKKL 404 Query: 363 ANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSF 422 + + + KR + EH++ ++ + +T F Sbjct: 405 LQKKEKVQLINGSDFWVAMRK-SLGDKRREISTEHIEKITAIFQDFEVSEVSKTFNSTDF 463 Query: 423 NAEETEVADSEENKNTDQHLATSRWRKFSRE----WIRTAKSDSLDISWLKDKDSIDADS 478 + + E + + R + + + +K + ++ +++ + Sbjct: 464 GYRKITI---ERPLRLNFQVIPERIERVKEQTAFINLAVSKKKNPEMRKIEEDAGREQQK 520 Query: 479 --LPEPDVLAAEAMGELVQALSELDALMR 505 L + L+ E + L + Sbjct: 521 LILGVLNGLSDELYKDRKPLELLLKKAFK 549 >UniRef50_UPI0001B4C614 type I restriction-modification system, M subunit n=1 Tax=Streptomyces griseoflavus Tu4000 RepID=UPI0001B4C614 Length = 503 Score = 272 bits (696), Expect = 2e-71, Method: Composition-based stats. Identities = 121/514 (23%), Positives = 212/514 (41%), Gaps = 60/514 (11%) Query: 2 NNNDLVAKLWKLCDNLRDG-GVSYQ-NYVNELASLLFLKMCKETGQEAEY---------- 49 + + L + + D +R G++ + + +L+ LLFLK ++ Sbjct: 16 SQSRLASLIKSARDTMRKDAGMNGDLDRLPQLSWLLFLKAFDGRVEQEGEALDPDGYRRA 75 Query: 50 LPEGYRWDDLK---SRIGQEQLQFYRKMLVHL--------GEDDKKLVQAVFHNVSTTIT 98 + E YRW+D G E F L+ ED + ++ +F +V + Sbjct: 76 IEEPYRWEDWATVPDFSGDELKSFVNDKLIPHLAGLVGDDAEDPRNVISTIFKDVVNRMQ 135 Query: 99 EPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKT 158 + LV ++ + + +YE +L++ + G+++TPRP+ + Sbjct: 136 SGTLLRDLVDIVNQIHFV---SADDIHTMAFVYESILKEMRDVAGGS-GEFYTPRPVNRF 191 Query: 159 IIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELV 218 ++ + E + DPA+GT GFL++A +K Q DTQ ++H+ G+E Sbjct: 192 MVQQSFLELGESILDPASGTGGFLVQAYEALKGQVKT------DTQRRRLHKDIRGIEKK 245 Query: 219 PGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLPKAHIVATNPPFGSAAGTN 276 P L MN LLH I+ G+ + + N+ +D K +V TNPPFG Sbjct: 246 PLPYLLGSMNLLLHGIDAPHIRRGSALLEMRNSNAAD-----KVDVVLTNPPFGGEEEAT 300 Query: 277 ITRTFV--HPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLF---EGGKGTDIRRDLMDK 331 + + F T F+ I++ L GGR A+V+P+ LF E G I++ LM Sbjct: 301 VVKAFPDGFRTQETAWLFLYSILDQLKLGGRCAIVLPNGSLFAVGENSIGAKIKKKLMKD 360 Query: 332 CHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYD--LRTNMPSFG 388 C+LHT++RLP G+F + +N+LFF K T +VW Y+ L + Sbjct: 361 CNLHTVVRLPQGVFAPYTQIPSNILFFEKTGP---------TQEVWFYEVPLPEGRRGYT 411 Query: 389 KRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWR 448 K P E + +G R GE ++ +++ S N + + Sbjct: 412 KTKPMRFEDFESCVDWWGGKQR--EGREVGEQAWVVPASDIIASGFNLDIANPHLGDDLK 469 Query: 449 KFSREWIRTAK-SDSLDISWLKDKDSIDADSLPE 481 + E + ++I L + +S E Sbjct: 470 HRTPEELVDELVKTEMEILGLLKELRSGLESADE 503 >UniRef50_Q3SFH7 Type I restriction-modification system methyltransferase subunit n=5 Tax=Bacteria RepID=Q3SFH7_THIDA Length = 676 Score = 271 bits (693), Expect = 4e-71, Method: Composition-based stats. Identities = 101/559 (18%), Positives = 185/559 (33%), Gaps = 99/559 (17%) Query: 1 MNNN-DLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK-----------ETGQEAE 48 M+ + +L +W + D LR G Y + L+ L+ + + Sbjct: 15 MSKSHELSNFIWSIADLLR-GPYRPPQYERVMLPLVVLRRFDCVLESTKDAVLAKYAQYQ 73 Query: 49 YLPEG--------------------YRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQA 88 EG ++ LK L + E+ +K+ + Sbjct: 74 GKLEGDALDGVLNKISGQRFHNHSPLSFEKLKGDPDNAHLHLVS-YINGFSENVRKIFER 132 Query: 89 V-FHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAG 147 F N + E + ++ +D + GA + G ++E L+++ + AG Sbjct: 133 FEFGNEIERMREHNILFLVIKKFCEVDLHPGA--VDNIEMGLLFEDLIRRFNEQANETAG 190 Query: 148 QYFTPRPLIKTIIHLLKPQPRE---------VVQDPAAGTAGFLIEADRYVKSQTNDLDD 198 +FTPR +I+ ++ LL + + DP GT G L E +Y++ + Sbjct: 191 DHFTPREVIRLMVSLLFMHDDDLLSKPGTVRKMLDPTCGTGGMLSETRKYLREHQSGARL 250 Query: 199 LDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLP 258 G + P + +A + LL + + I+ G+TL D Sbjct: 251 F------------VYGQDFNPRSYAVAASDLLLRTNLADAE-TSTIKFGDTLIDDQFPGE 297 Query: 259 KAHIVATNPPFGSAAGT---------------NITRTFVHPTSNKQLCFMQHIIETLHP- 302 + NPPFG ++ L F+QH++ P Sbjct: 298 RFDYFLANPPFGVDWKRQQKDVVREHEKQGFAGRFGAGTPRVNDGALLFLQHMVSKFEPV 357 Query: 303 -------GGRAAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKT 352 G R A+V + LF GG ++IR+ +++ L I+ +P +FY G+ T Sbjct: 358 DPANNLDGSRLAIVFNGSPLFTGGAGSGESEIRKWIIENDWLEAIVAMPEQMFYNTGIGT 417 Query: 353 NVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFG-----KRTPFTDEHLQPFERVYGE 407 V T A + + D R S KR F+D H+ R YG+ Sbjct: 418 YVWVVTNRKEAR------RRGRIQLIDGRDRWQSLRRSLGDKRREFSDAHITDIVREYGD 471 Query: 408 DPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISW 467 + + F + E + R +F Sbjct: 472 MRDNATSKVFDNADFGYNRLTI---ERPLRLAFQITLERKERFLDACPELLNDLQAIDKA 528 Query: 468 LKDKDSIDADSLPEPDVLA 486 + + S+D +++ + L Sbjct: 529 IGREASLDWNAIWKQAQLT 547 >UniRef50_Q47163 Type I restriction enzyme EcoprrI M protein n=139 Tax=cellular organisms RepID=T1MP_ECOLX Length = 520 Score = 271 bits (692), Expect = 5e-71, Method: Composition-based stats. Identities = 99/552 (17%), Positives = 183/552 (33%), Gaps = 106/552 (19%) Query: 3 NNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQ---------------EA 47 +L ++W++ +++R G V ++ + LF + E + Sbjct: 9 RAELHRQIWQIANDVR-GSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSICYAKLDD 67 Query: 48 EYLPEGYRWDDLK------------------SRIGQEQLQFYRKMLVHLGEDDKKL---- 85 + + + D +K + + V + Sbjct: 68 SVITDDIKDDAIKTKGYFIYPSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPSEA 127 Query: 86 -VQAVFHNVSTT--------ITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQ 136 ++ +F + TT + ++ A++ ++ L + + D FGD YE L+ Sbjct: 128 DIKGLFADFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQ-IDLFGDAYEFLIS 186 Query: 137 KNANETKSGAGQYFTPRPLIKTIIHLLKPQPRE--VVQDPAAGTAGFLIEADRYVKSQTN 194 A G++FTP+ + K I L + DPAAG+ L++A + Sbjct: 187 NYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTHVNKIYDPAAGSGSLLLQAKK------- 239 Query: 195 DLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDG 254 D I F G E+ T LA MN LH+I + I+LGNTL Sbjct: 240 -------QFDDHIIEEGFFGQEINHTTYNLARMNMFLHNINYDKF---DIKLGNTLTEPH 289 Query: 255 ENLPK-AHIVATNPPFGSAAGTNIT------RTFVH-----PTSNKQLCFMQHIIETLHP 302 K + +NPP+ + F P S F+ H + L Sbjct: 290 FRDEKPFDAIVSNPPYSVKWIGSDDPTLINDERFAPAGVLAPKSKADFAFVLHALNYLSA 349 Query: 303 GGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTV 362 GRAA+V + + GG IR+ L+D ++ T++ L +F+ + N+L +K Sbjct: 350 KGRAAIVCFPGIFYRGGAEQKIRQYLVDNNYVETVISLAPNLFFGTTIAVNILVLSKHKT 409 Query: 363 ANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSF 422 V D TD H++ +V+ Sbjct: 410 DT---------KVQFIDASELFKKETNNNILTDAHIEQIMQVFASKED------------ 448 Query: 423 NAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEP 482 A + E D +L+ S + + + +DI+ L + + + Sbjct: 449 VAHLAKSVAFETVVANDYNLSVSSYVE------AKDTREIIDIAELNAELKTTVSKIDQL 502 Query: 483 DVLAAEAMGELV 494 + E+ Sbjct: 503 RKDIDAIVAEIE 514 >UniRef50_O27025 Type I restriction modification enzyme, subunit M n=6 Tax=Archaea RepID=O27025_METTH Length = 616 Score = 271 bits (692), Expect = 6e-71, Method: Composition-based stats. Identities = 107/546 (19%), Positives = 189/546 (34%), Gaps = 96/546 (17%) Query: 3 NNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKET------------------- 43 D+ L D +R + +Y + LLF+K + Sbjct: 118 RADIERILKGAADLIR----TRVDYK-FILVLLFMKQMSDKWMMEYQKAYEDAIKEYGLS 172 Query: 44 GQEAEY-----------LPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHN 92 +EA + E Y WD+++ + ++F L +L E + V Sbjct: 173 EEEARLEARNSAYHDLDIKEEYLWDNIRKDVENLPIKFA-GALKNLAELNPAFKDVVDAF 231 Query: 93 VSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTP 152 T+ ++ ++ + L D GD YE +L+ A G+ +TP Sbjct: 232 DFVEFTQSQENREILRQLVELFSEKKLTNVDPDILGDAYEWILRYFAPTKAKE-GEVYTP 290 Query: 153 RPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAF 212 R +I+ ++ +L P+P E V DPA+ + G LI + +YVK + + L Sbjct: 291 REVIRLLVEILDPKPGESVYDPASASNGMLIISHKYVKETYGEAERLF-----------L 339 Query: 213 IGLELVPGTRRLALMNCLLHDI-EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGS 271 G E+ T L MN +HDI + ++ HG + SDG + + +V NPP+ Sbjct: 340 YGQEVNRKTMALGSMNMYIHDIKDHHIAHGDTLLYPKFKESDG--IMRFDVVIANPPWNQ 397 Query: 272 A-----------AGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGK 320 R + ++QH+I + GR VV+ + LF GG+ Sbjct: 398 DGYGEDTLKKGDYWRERFRYGFVNKQSADWAWIQHMIASAKDDGRIGVVIDNGCLFRGGR 457 Query: 321 GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDL 380 IR +++ + ++ LP +FY G ++ K V + Sbjct: 458 EKSIRSAVLEDDLIEAVILLPEKLFYNTGAPGAIIILNKDKDEE------RRGKVLFINA 511 Query: 381 RTNMPS---FGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKN 437 K +D +++ Y E + V D +E + Sbjct: 512 GEEYEKHPEVRKLNILSDGNIERILEAYREFQGDD------------GFSRVVDLDEIRE 559 Query: 438 TDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQAL 497 D +L + F E + W++ L E + AE + L Sbjct: 560 NDYNLNVPLY-AFPEEELEDIDVAG---EWMR---------LSEIEEELAEVDERIRGYL 606 Query: 498 SELDAL 503 EL + Sbjct: 607 DELGYM 612 >UniRef50_A6W079 N-6 DNA methylase n=16 Tax=Bacteria RepID=A6W079_MARMS Length = 545 Score = 270 bits (691), Expect = 8e-71, Method: Composition-based stats. Identities = 116/559 (20%), Positives = 205/559 (36%), Gaps = 96/559 (17%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQ-NYVNELASLLFLKMCKETGQEAEYLPEG------ 53 M + + KL + GG++ + +++ L+F +M + E Sbjct: 1 MLTGPIRNDIDKLWEKFWTGGITNPLTVIEQISYLMFARMLDMQEEAEERKANRTGKAFV 60 Query: 54 -----------YRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKL----------------- 85 RW + K+ G++ + + + ++ Sbjct: 61 RLFPDTKEGQLLRWKNFKNLSGKDLHKHLKNEVYPYFSKLGQVADIDQVGEDTPVKAMGH 120 Query: 86 VQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSG 145 + + I + A + +DSL D GD+YE LL K Sbjct: 121 ISDYMEDADLEIKNESVLVAALEMVDSLPLNQS------DVKGDIYEYLLSKLTTA--GI 172 Query: 146 AGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQ- 204 GQ+ TPR +I +I ++ PQP + + DP+ GTAGFL Y+ + +++ D + Sbjct: 173 NGQFRTPRHIIDAMIEIIDPQPWDTICDPSCGTAGFLARTMEYLNRKHTSPENIWTDEEG 232 Query: 205 -------------DFQIHRAFIGLELVPGTRRLALMNCLLHDIEG-NLDHGGAIRLGNTL 250 + F G + R++ MN +LH + G N+ + + Sbjct: 233 NQHYPGDLLENYREHISDDMFWGFDFDTTMLRVSSMNMMLHGVNGSNVLYQDTLNKSIRE 292 Query: 251 GSDGENLPKAHIVATNPPFGSAAGTNITRTFV---HPTSNKQLCFMQHIIETLHPGGRAA 307 + ++ NPPF + T + T +L F+ HI+ +L GGRAA Sbjct: 293 NFPQQEENFFDVILANPPFKGSLDETNTNPELLSMVKTKKTELLFVAHILRSLKLGGRAA 352 Query: 308 VVVPDNVLFEGGK-GTDIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANP 365 V+VPD VLF K +R++L++ L I+ LP+G+F GV T +L FTKG Sbjct: 353 VIVPDGVLFGSSKAHQQLRQELIENNQLEGIISLPSGVFKPYAGVSTAILLFTKGGT--- 409 Query: 366 NQDKNCTDDVWVYDLRTNMPSF-GKRTPFTDE---HLQPFERVYGEDPHGLSPRTE---- 417 T+ VW YDL+ + S KRTP E L + + + Sbjct: 410 ------TERVWFYDLQADGLSLDDKRTPLKGEGTNDLPDAIAKWKAYRQLVESNFDFSQF 463 Query: 418 --------------GEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSL 463 + ++ V D+ + + L+ +R+++ E + Sbjct: 464 GDDAQGCANPENAAAYFQDKTQKAFVVDAADIASNKYDLSINRYKEVVYEEEVYEDPKVI 523 Query: 464 --DISWLKDKDSIDADSLP 480 + L+ D L Sbjct: 524 LGKLIALEKDIMADLKELE 542 >UniRef50_A5GE24 N-6 DNA methylase n=13 Tax=Bacteria RepID=A5GE24_GEOUR Length = 777 Score = 270 bits (689), Expect = 1e-70, Method: Composition-based stats. Identities = 99/564 (17%), Positives = 187/564 (33%), Gaps = 85/564 (15%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMC-------------------- 40 +N + A +W + D LR G Y + L+ Sbjct: 3 INFSQTAAFIWSVADLLR-GDFKQSQYGRIILPFTLLRRLECVLEQSKPAVLAKHAEVSK 61 Query: 41 ----KETGQEAEYLPEGYRWD-----DLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAV-F 90 +E ++ + DL + +D +++ + F Sbjct: 62 MNLPEEAYEKMVLRATDESFFNISPMDLSKLGESGIKDNLENYIQCFSKDAREIFEYFKF 121 Query: 91 HNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYF 150 + + + +V + D S + G ++E L+++ A + AG++F Sbjct: 122 AEFIGQLNDANLLYKVVQKFANTDL--SPQAISNYEMGLVFEELIRRFAESSNETAGEHF 179 Query: 151 TPRPLIKTIIHLLKPQPRE---------VVQDPAAGTAGFLIEADRYVKSQTNDLDDLDG 201 TPR +++ L+ + E + DP AGT GFL YV Sbjct: 180 TPRDIVRLTTSLVFMEDDEALTRDGIIRTIYDPTAGTGGFLSSGMEYVYELNPKAVMRA- 238 Query: 202 DTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAH 261 G EL P + + + L+ + + I+LGNTL +D K Sbjct: 239 -----------FGQELNPESYAICKADMLIKGQDVSR-----IKLGNTLSNDQLYADKFD 282 Query: 262 IVATNPPFGSAAGT---------------NITRTFVHPTSNKQLCFMQHIIETLHP---- 302 + +NPPFG + S+ L F+ H+I L Sbjct: 283 YMLSNPPFGVDWKKVETEINDEHTLKGFAGRFGPGLPRVSDGSLLFLMHLISKLRDTKDG 342 Query: 303 GGRAAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTK 359 GGR +++ + LF GG ++IRR +++ L I+ LPT +FY G+ T V + Sbjct: 343 GGRIGIILNGSPLFTGGAGSGESEIRRYILEADLLEAIVALPTDMFYNTGIATYVWVLSN 402 Query: 360 GTVANPNQDKNCTDDV-WVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEG 418 + V +R ++ S KR ++ + R +G + + Sbjct: 403 KKDPERKGKVQLINGVNLCAKMRKSLGS--KRNVMGEDDIATITRAFGRFERVDTLTLDK 460 Query: 419 EWSFNAEETEVADSEENKNTD-QHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDAD 477 + AD+ + F I + L + + ++ Sbjct: 461 PDEVKSNRGRQADNPKAPEPKTFSSKIFATTDFGYRRITVERPLRLSVQFTGERLEELRF 520 Query: 478 SLPEPDVLAAEAMGELVQALSELD 501 + +V+ A + Q+ ++ D Sbjct: 521 APKPFNVVMKWAYEQFGQSWTDAD 544 >UniRef50_B8KQ49 Type I restriction-modification system, M subunit n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KQ49_9GAMM Length = 489 Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats. Identities = 121/466 (25%), Positives = 207/466 (44%), Gaps = 53/466 (11%) Query: 4 NDLVAKLWKLCDNLRDG-GVS-YQNYVNELASLLFLKMCKETGQEAEYL--------PEG 53 ++ + + D +R GV +++L ++FLK+ + E E + PE Sbjct: 2 TNITGVIKSIQDIMRKDVGVDGDAQRISQLVWMIFLKILDDREAELELIEDDFVSPIPEH 61 Query: 54 YRWDDLKSR----IGQEQLQFYRKMLVHLGEDDK---------KLVQAVFHNVSTTITEP 100 RW + + G+ L F +L ++ + ++V+++F + Sbjct: 62 LRWRNWAANPEGQTGEALLDFVNGVLFPKLKELQAQGAVGKRAQVVRSIFDGALNFMKSG 121 Query: 101 KQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTII 160 + +++ ++ +D+ N + R FGD+YE +L+ ++ AG+++TPR + + II Sbjct: 122 TLMRQVINKINEIDFNNTEN---RHTFGDIYEKILKDL--QSAGNAGEFYTPRAVTRLII 176 Query: 161 HLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPG 220 L PQ E+V DPA GT GFL A + + + R G+E Sbjct: 177 DRLNPQLDEIVFDPACGTGGFLSCAIDH------KQQFVRTSADRETLARTLRGVEKKSM 230 Query: 221 TRRLALMNCLLHDIEGN--LDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNIT 278 L + N +LH I+ + H + D + + H++ATNPPFG I Sbjct: 231 PFNLCITNMILHGIDTPTGIAHDNTLARP---FKDYGDKDRVHVIATNPPFGGMEEDGIE 287 Query: 279 RTFV--HPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHT 336 F + T FM II+ L GRA V++PD LF G + I++DL++ C+LHT Sbjct: 288 NNFPAQYRTRETADLFMALIIKLLRVNGRAGVILPDGFLFGEGTKSSIKKDLIETCNLHT 347 Query: 337 ILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYD--LRTNMPSFGKRTPF 393 I+RLP G+F G+KTN+LFFTKG T+D+W ++ + ++ K P Sbjct: 348 IIRLPGGVFNPYTGIKTNILFFTKGQP---------TEDIWFWEQPYPEGVVNYNKGRPM 398 Query: 394 TDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTD 439 E +G++ RTE ++ VA N + Sbjct: 399 QFEEFDALRDWWGDEATKFRTRTENPHAWKVTADHVATRGYNLDEK 444 >UniRef50_C5VLJ5 N-6 DNA methylase n=1 Tax=Prevotella melaninogenica ATCC 25845 RepID=C5VLJ5_9BACT Length = 642 Score = 269 bits (687), Expect = 2e-70, Method: Composition-based stats. Identities = 96/610 (15%), Positives = 198/610 (32%), Gaps = 106/610 (17%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK------------ETGQEAE 48 M +L + +W + + +R G + + L+ E + Sbjct: 1 MTEQELASVIWDIKEIIR-GLYDDAEVEDVILPFTLLRRLDCVLDEKRDAIMEELSKIPT 59 Query: 49 YLPEGYRWDDLKSRIGQEQLQFYR---------------------KMLVHLGEDDKKLVQ 87 PE + L S + + L F+ L ++ + ++ Sbjct: 60 DAPEKMKKIKLDSILRRNNLTFFNVSGLSMEKMLAAPAQIATSFDYYLNSFTDNVRDILA 119 Query: 88 AV-----------FHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQ 136 ++ + E ++ ++ S G ++E +++ Sbjct: 120 NFVHKQDAGDHLDLSDIYRRLAESNKLFSVCQMFVQ-RADLHPDKMSNAMMGTVFENVIR 178 Query: 137 KNANETKSGAGQYFTPRPLIKTII---------HLLKPQPREVVQDPAAGTAGFLIEADR 187 ++ + + AGQ++TPR +++ ++ L P + DP GT G L E Sbjct: 179 RSKESSNTKAGQFYTPRDIVQLLVALTISGHEDELYIPGRIFSIYDPCCGTGGMLTEGKA 238 Query: 188 YVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLG 247 Y++ ++ D + G EL T + + L+ + N+ + G Sbjct: 239 YLQRLAHNPD----------LKVQLFGQELNDKTYAICKADLLMKGDDHNISQQ--LFKG 286 Query: 248 NTLGSDGENLPKAHIVATNPPFGSAAGTN---------------ITRTFVHPTSNKQLCF 292 NT D + + NPPFG G + + TS+ L F Sbjct: 287 NTFSEDRLYGRTFNFMLANPPFGVDWGKDEYVKKCVQNDNAPGRRFEAGLPTTSDGSLLF 346 Query: 293 MQHIIETL--HPGGRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYA 347 + H++ + G R +V+ + LF G G ++IR+ L+D+ L I+ LP +FY Sbjct: 347 LMHMVAKMDQENGSRIGIVLNGSPLFNGDAGSGWSNIRKMLLDRNLLDCIVSLPGDLFYG 406 Query: 348 QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPS--------FGKRTPFTDEHLQ 399 G+ T + V D KR ++E + Sbjct: 407 TGISTYLWILDNKRPVEKQ------GKVLFIDASHKHEYAKLLQTNLGKKRYDISEEGAK 460 Query: 400 PFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAK 459 +Y E + + +A R ++ W Sbjct: 461 NILDIYREYQSVSCDILNENTGEVEHLETAKKLDYDDFLYTKVAVRRPMRY---WFEGIT 517 Query: 460 SDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALMRELGASDEADLQRQL 519 S + + D +L +V A + + + ++ +E A ++ A + + Sbjct: 518 SKYEQMKAEEGFKPDDKKNLIYKNVAAIDGIDK-RRSDTEFFAFLKSKKCKPSA-AEIKN 575 Query: 520 LEEAFGGVKE 529 + +A+G + E Sbjct: 576 IRKAWGSMSE 585 >UniRef50_A2TPX2 Type I restriction modification system M subunit (Site-specific DNA-methyltransferase subunit) n=2 Tax=Flavobacteriaceae RepID=A2TPX2_9FLAO Length = 544 Score = 269 bits (687), Expect = 2e-70, Method: Composition-based stats. Identities = 112/564 (19%), Positives = 208/564 (36%), Gaps = 107/564 (18%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQ-NYVNELASLLFLKMCKETGQEAEYLPEG------ 53 M +K+ + +GG+S V +L+ L+F+K E +E + Sbjct: 1 MITTTHKSKVDAIWGTFWNGGISNTLQIVEQLSYLIFIKNLDEVETRSELKKQRTGVDFT 60 Query: 54 ---------YRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKL------VQAVFHNVSTTIT 98 +RW ++K + + + + + L N S + Sbjct: 61 PIFNEEQQQFRWKNIKEMDVNTRHMLFADTVSGIFPFLRNLGVETSAFAKHMRNASYGM- 119 Query: 99 EPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKT 158 + + + +++ +D LD +D GD++E +L K E +GQ+ TPR +I+ Sbjct: 120 KAQVLDSVIEQLDQLDM------DEQDAKGDIFEYMLSKM--EGGGTSGQFRTPRHIIRL 171 Query: 159 IIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELV 218 ++ L++P + + DP+AGTAGFL+ A Y+ + + ++ ++ F G+E Sbjct: 172 MVELMQPTLEDTICDPSAGTAGFLVGAKEYIDTHYDVMER--EAAKEHIDTMMFNGMEFD 229 Query: 219 PGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNIT 278 R+A MN LH +E I + + D + +V NPPF Sbjct: 230 ATMLRIASMNLFLHGVEA-----PNIIDVDAVSKDNDIADAYTLVLANPPFKGTIDKESI 284 Query: 279 RTFVHP---TSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGK-GTDIRRDLMDKCHL 334 + + TS +L F+ ++ + GGRAAV+VPD VLF K IR +++ L Sbjct: 285 ASDLKTVTSTSKTELLFLALMLRQMKMGGRAAVIVPDGVLFGSSKAHKSIREEIVANHKL 344 Query: 335 HTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPF 393 ++ +P+G+F GV T ++ FTK TD VW YD+ + S + Sbjct: 345 EAVISMPSGVFKPYAGVSTAIMIFTKTGSG-------GTDHVWFYDMLADGKSLDDKRNL 397 Query: 394 TDE----------------------------HLQPFERVYG------------------- 406 + +L Y Sbjct: 398 LVDAETFDAFSFGDAFTKVTSEELKTLHDNFNLPQILDHYKYLKSDYFEKMHTAEGELLQ 457 Query: 407 --------EDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTA 458 + L ++ ++ + E K D L+ +R+++ E + Sbjct: 458 VKDTPENLGFSNFLDGTCTHNYADRTSQSFLVPLAEIKENDWDLSINRYKEIVYEEVEYD 517 Query: 459 KSDSLD--ISWLKDKDSIDADSLP 480 + I+ L ++ L Sbjct: 518 APTEIIGRINKLSEERIDLMQQLA 541 >UniRef50_A5WF32 N-6 DNA methylase n=11 Tax=Proteobacteria RepID=A5WF32_PSYWF Length = 806 Score = 269 bits (687), Expect = 2e-70, Method: Composition-based stats. Identities = 110/607 (18%), Positives = 197/607 (32%), Gaps = 126/607 (20%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEY------------ 49 +N+L A +W + D LR G Y + L+ + +E++ Sbjct: 13 TSNNLAAFIWSVADLLR-GDFKQSQYGRIILPFTLLRRLECVLEESKDAVVEEAQKISAM 71 Query: 50 -LPEGYRWDDLKSRIG-----------------QEQLQFYRKMLVHLGEDDKKLVQAV-F 90 L E L + + + +D +++ F Sbjct: 72 GLNEEAEAKFLLRKTNGLAFYNTSPMTLAKMGQSDIEANLSHYIQSFSKDAREIFAHFKF 131 Query: 91 HNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYF 150 + + + +V ++D S + G ++E L+++ A + AG++F Sbjct: 132 EEFVGQLNDANLLYKVVQKFQNVDL--SPEAVSNYEMGLVFEELIRRFAESSNETAGEHF 189 Query: 151 TPRPLIKTIIHLLKPQPRE---------VVQDPAAGTAGFLIEADRYVKSQTNDLDDLDG 201 TPR +++ L+ + + + DP AGT GFL YV + Sbjct: 190 TPRDIVRLTTSLVFMEDDDALIKDGIIRTIYDPTAGTGGFLSSGMEYVLELNPNAVMRA- 248 Query: 202 DTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAH 261 G EL P + + + L+ E + I+LGNTL D K Sbjct: 249 -----------FGQELNPESYAICKADMLIKGQEVSR-----IKLGNTLSDDQLPADKFD 292 Query: 262 IVATNPPFGSAAG---------------TNITRTFVHPTSNKQLCFMQHIIETLHP---- 302 + +NPPFG S+ L F+ H+I + P Sbjct: 293 YMLSNPPFGVDWKKIAGEIKDEHEQKGFDGRFGPGTPRVSDGSLLFLLHLISKMRPVASP 352 Query: 303 --------------------GGRAAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILR 339 G R +++ + LF GG ++IRR +++ L I+ Sbjct: 353 KRDSLELSNRSSEQQDTSVTGSRIGIILNGSPLFTGGAGSGESEIRRYILESDLLEAIIA 412 Query: 340 LPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVY-DLRTNMPSFGKRTPFTDEHL 398 LPT +FY G+ T V T D +Y +R ++ S KR ++E + Sbjct: 413 LPTDMFYNTGIATYVWILTNHKAPERKGKVQLIDGTNLYSKMRKSLGS--KRNEMSEEDI 470 Query: 399 QPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTA 458 + R +G+ + + + + + E +T Sbjct: 471 KIITRTFGDFEVVDARALDKPADVKSNRGRQSAT-----------------PKAETAKTF 513 Query: 459 KSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALMRELGASDEADLQRQ 518 S D + L ++ EA+ L A D++M L Q Sbjct: 514 ASKIFDTHEFGYRRVTIERPLRLSAQMSDEAIESLRYAERTYDSVMPALYE----KFGEQ 569 Query: 519 LLEEAFG 525 EE +G Sbjct: 570 WTEETYG 576 >UniRef50_Q65QI8 HsdM protein n=8 Tax=Proteobacteria RepID=Q65QI8_MANSM Length = 732 Score = 268 bits (686), Expect = 3e-70, Method: Composition-based stats. Identities = 110/613 (17%), Positives = 194/613 (31%), Gaps = 107/613 (17%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMC---------------KETGQE 46 + + + +W + + LR G Y + L+ L E Sbjct: 9 KQSTISSVIWSMANMLR-GTYRPPQYRRVMLPLIVLARFDAILAPYTDAMKAKADELQAM 67 Query: 47 AEYLPEGYRWDDLKSRIGQEQLQ-----------------------FYRKMLVHLGEDDK 83 PEG ++ ++ + K L K Sbjct: 68 GGKAPEGALYEMALTKAADPNRKQPLYNTSGYNLQRLLADQDHIAANLVKYLQGFSAKAK 127 Query: 84 KLVQAV-FHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDD----FGDMYEGLLQKN 138 + F N + ++ A+VS NG + G ++E L++K Sbjct: 128 DIFDKFEFENEIEKLDSSNRLYAVVSQFQKDLKENGIDLSPQSISNLQMGYIFEELVRKF 187 Query: 139 ANETKSGAGQYFTPRPLIKTIIHLL---------KPQPREVVQDPAAGTAGFLIEADRYV 189 + AG +FTPR +I +++L+ +P + DP AGT G L E+++++ Sbjct: 188 NEQANEEAGDHFTPREVINLMVNLIFEEDQQRLSQPHAIASIYDPTAGTGGMLSESEKHL 247 Query: 190 KSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE-GNLDHGGAIRLGN 248 KS + I G E + + + L+ D NL G + + N Sbjct: 248 KSYNDS------------IKLQLFGQEYNAESYAICCADLLIKDEPISNLVFGDTLGVKN 295 Query: 249 TLGS-------DGENLPKAHIVATNPPFGSAAGTN--------------ITRTFVHPTSN 287 + + DG K + +NPPFG + ++ Sbjct: 296 SKNTGTGFVPHDGHQTKKFDYMFSNPPFGVEWKNEQDFINDEAKSGFAGRFGAGLPRIND 355 Query: 288 KQLCFMQHIIETLHP----GGRAAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRL 340 L F+QH+I + P G R AVV + LF G ++IRR +++ L I+ L Sbjct: 356 GSLLFLQHMISKMKPVEEGGSRIAVVFNGSPLFTGDAGSGESNIRRWIIENDWLEAIIAL 415 Query: 341 PTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQP 400 P +FY G+ T V + D Y + KR + + Sbjct: 416 PDQLFYNTGIYTYVWIVSNKKSDRRKGKVQLIDGTQHYQ-KMAKSLGDKRNELSPAQIAD 474 Query: 401 FERVYGEDPHGLSPRTEGEWSFNAEE-----TEVADSEENKNTDQHLATSRWRK------ 449 R+Y + G S R ++ E + R K Sbjct: 475 LTRLYADFKDGASGRISTKFCSKIFNNQDFGYLKLTVERPLRLNFQAGQERIEKVKTQTA 534 Query: 450 FSREWIRTAKSDSLDISWLKDKDSIDADS-LPEPDVLAAEAMGELVQALSELDALMRELG 508 F + + D I + + + L + L LD ++ L Sbjct: 535 FINLAVSKKRKDEAQIKAEEAEGQRQQQAILAALSTIGDGLYQNRTAFLKLLDKALKGLD 594 Query: 509 ASDEADLQRQLLE 521 A L++ ++E Sbjct: 595 FKLGAPLKKAIIE 607 >UniRef50_Q1Q861 N-6 DNA methylase n=1 Tax=Psychrobacter cryohalolentis K5 RepID=Q1Q861_PSYCK Length = 526 Score = 268 bits (685), Expect = 3e-70, Method: Composition-based stats. Identities = 100/547 (18%), Positives = 188/547 (34%), Gaps = 87/547 (15%) Query: 1 MNNNDLVAKLWKLCDNLR-DGGVSYQNYVNELASLLFLKMCKETGQEAE----------- 48 ++ L + LW DNLR + ++ Y + L L+FL+ + ++A+ Sbjct: 3 ISIKQLESDLWNAADNLRANSTLTAAEYKDPLLGLVFLRFVQNRHEDAKVKIQESLAINP 62 Query: 49 -------------------YLPEGYRWDDLKSRIGQEQL-QFYRKMLVHLGEDDKKLVQA 88 LPE ++D L + E + + + + E+ LV Sbjct: 63 RTGQKREVTKDDFVAAGSILLPEKAKYDYLAALPESENIAEAINNAMKLIEEEYPSLVGI 122 Query: 89 VFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNA--NETKSGA 146 + N + K + LV + + D FG +YE L K + Sbjct: 123 LPKNYQVF--DNKLLRDLVRVFNK----DAVRKAKGDIFGRIYEFFLMKFSMQGAGAQEG 176 Query: 147 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDF 206 G++FTP L+ I++ ++P ++ DPA G+ G ++ +++ + + Sbjct: 177 GEFFTPPSLVNLIVNFIQPDHG-IIHDPACGSGGMFVQTAHFIQGHMPN--------KSV 227 Query: 207 QIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATN 266 G EL +LA MN +H IEG + + + + K V N Sbjct: 228 NEAITVYGTELKSNNTKLAKMNLAVHGIEGAIIESNS-----FYTNPHDLNGKCDFVMAN 282 Query: 267 PPFGSAAGTNITRTFVHPT--------------SNKQLCFMQHIIETLHPGGRAAVVVPD 312 PPF + + N ++Q+ L+ GRA V+ Sbjct: 283 PPFNVSGIDGKNKFLTEDARLPFGAPLTKGGTIGNGNYLWIQYFHSYLNKTGRAGFVMAS 342 Query: 313 NVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCT 372 + G IR+ L++ + I+ + FY + + +V FF K A Sbjct: 343 SATDAGHAEKLIRQQLIETGDVECIVSIANNFFYTRSLPCHVWFFNKEKKAENK------ 396 Query: 373 DDVWVYDLRTNMPSFGKR-TPFTDEHLQ---PFERVYGEDPHGLSPRTE--------GEW 420 D + + D R F+++ L+ + D G+S E G + Sbjct: 397 DKILMIDARNTYRKVSSTIQDFSEDQLEGLTALINAFRGDELGVSKDNEWFTEHFPDGTY 456 Query: 421 SFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLP 480 + +V D + K D L R+ + + I ++ ++ + S Sbjct: 457 TDVEGLCKVVDLDALKEQDYSLTPGRYVGVNID-IDMDFDYKGRMTEIRSELSSLNKEAA 515 Query: 481 EPDVLAA 487 E Sbjct: 516 ELMKKIQ 522 >UniRef50_B1ZYW9 N-6 DNA methylase n=31 Tax=cellular organisms RepID=B1ZYW9_OPITP Length = 563 Score = 268 bits (685), Expect = 3e-70, Method: Composition-based stats. Identities = 105/432 (24%), Positives = 171/432 (39%), Gaps = 56/432 (12%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQ-NYVNELASLLFLKMCKETGQEAEYLP-------- 51 M + +++ L + GG+S + ++ LLFLK + + E Sbjct: 1 MLTGQIRSQIDALWNAFWTGGISNPLEVIEQITYLLFLKRLDDLQKNEENKAARLKLKKL 60 Query: 52 ----------------EGYRWDDLKSRIGQEQLQFYRKMLVHLGED---DKKLVQAVFHN 92 E RW + +E + + D + Sbjct: 61 ERRIFPAAKDAKGRPYEDCRWSRFQHLEAKEMFTVVSEHVFPFLRTLGGDDSTYAHHMKD 120 Query: 93 VSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTP 152 TI P + +V +D + + RD GD+YE +L K A+ GQ+ TP Sbjct: 121 ARFTIPTPALLAKVVDLIDQIPM------EDRDTKGDLYEYMLGKIASA--GQNGQFRTP 172 Query: 153 RPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAF 212 R +I+ ++ L P ++V+ DPA GTAGFL+ A Y++++ ++ Q F H Sbjct: 173 RHIIQLMVELTAPTAKDVICDPACGTAGFLVAAGEYLRTRHPEILRDTKLRQHFHHHLFH 232 Query: 213 IGLELVPGTRRLALMNCLLHDIE-GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGS 271 + R+ MN LLH +E ++ + ++ + K ++ NPPF Sbjct: 233 G-FDFDNTMLRIGSMNMLLHGVENPDIRYRDSLAQDH-----AGEEEKFTLLLANPPFAG 286 Query: 272 AAGTN---ITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLF-EGGKGTDIRRD 327 + + T +L F+ + L PGGRAAV+VPD VLF +R+ Sbjct: 287 SLDYENCAKDLQQIVKTKKTELLFLALFLRLLKPGGRAAVIVPDGVLFGSSNAHRTLRKL 346 Query: 328 LMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPS 386 L++ L ++ LP G+F GV T +L FTK TD VW Y + + S Sbjct: 347 LVEDQKLDAVISLPGGVFKPYAGVSTAILLFTKTNSG-------GTDHVWFYKVEADGMS 399 Query: 387 F-GKRTPFTDEH 397 KRT Sbjct: 400 LDDKRTELLPSE 411 >UniRef50_D1SQT0 N-6 DNA methylase n=1 Tax=Acidovorax avenae subsp. avenae ATCC 19860 RepID=D1SQT0_9BURK Length = 483 Score = 268 bits (685), Expect = 4e-70, Method: Composition-based stats. Identities = 90/486 (18%), Positives = 164/486 (33%), Gaps = 70/486 (14%) Query: 38 KMCKETGQEA--------EYLPEGYRWDDLKSRIG-QEQLQFYRKMLVHLGEDDKKLVQA 88 K + + + L + + + + L +L + L+Q Sbjct: 41 KYFSDRDARDAGYGIALNGKTSQRQLFAVLTNSGHMADLGKRIDQALANLEDRHP-LLQG 99 Query: 89 VFHNVSTTI-------TEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANE 141 VFH+VS + ++ + L++ + E L+ + A Sbjct: 100 VFHDVSFDSAALGNPEQRQRILSDWLDQFGGLEFDYRDENA-AESVAFACETLISEVAAA 158 Query: 142 TKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDG 201 + ++FTP + + I +L+P+ E V DP G+ L+ + ++++ Sbjct: 159 SGRRGAEFFTPPQVSRLIAQILQPEAGESVGDPCCGSGTLLLACSAFARARSG------- 211 Query: 202 DTQDFQIHRAFIGLELVPGTRRLALMNCLLHD-IEGNLDHGGAIRLGNTLGSDGENLPKA 260 G E T LA +N L+H + L+ G ++ L +DG L + Sbjct: 212 -----YEGCQLFGQEKNGSTWALAKINMLVHGELTAQLEWGDTLKDPR-LVADG-RLREF 264 Query: 261 HIVATNPPFGSAAG---------TNITRTFVHPTSNKQLCFMQHIIETLHPG-GRAAVVV 310 +V +NPPF R + P F+ H++ETL PG GR AVVV Sbjct: 265 DVVVSNPPFNVKDWGQEAAANDLYGRYRRGIPPRGTADYAFLSHMVETLKPGRGRMAVVV 324 Query: 311 PDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKN 370 VLF G IRR L+++ + ++ LPT + + +L K Sbjct: 325 SHGVLFRSGAELQIRRQLLEEGLVDAVIALPTKLLPNTPLPIALLVLRKDKSDRR----- 379 Query: 371 CTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVA 430 V + DE L E Y + Sbjct: 380 ----VLFIKASRQFEHGKTQNRLRDEDLAQIEATYVARAD------------VEGYARLV 423 Query: 431 DSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAM 490 E+ D +L +R+ + +D+ L+ + S L + + A + Sbjct: 424 SLEDILQNDCNLNVARYVE------AVEPVCQVDLEALRAERSQLRAELEDLESRFASLI 477 Query: 491 GELVQA 496 E+ + Sbjct: 478 QEMSRG 483 >UniRef50_C6CR27 N-6 DNA methylase n=1 Tax=Dickeya zeae Ech1591 RepID=C6CR27_DICZE Length = 708 Score = 268 bits (684), Expect = 5e-70, Method: Composition-based stats. Identities = 97/584 (16%), Positives = 184/584 (31%), Gaps = 99/584 (16%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK-------------------- 41 + L +W +C+ LR G Y + L L+ + Sbjct: 5 THRQLANFIWSICNLLR-GPYKRNEYRKVILPLTVLRRFECLLEPTRQDALAEFQWLKTK 63 Query: 42 -ETGQEAEYLP-EGYRWDDLKSR--------------IGQEQLQFYRKMLVHLGEDDKKL 85 E Q+A GYR+ +L + + + + Sbjct: 64 PERVQQARLQQITGYRFYNLSRMQLTLSGENIHSLLDDPNNLAPNLNSYINGFSANVRAI 123 Query: 86 VQAV-FHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKS 144 ++ F T + E + +V +D + G ++E L++ A ++ Sbjct: 124 MERFKFSEQITHMAEKNILFEVVKAFAKIDL--SPQRVDQMQMGYVFEELIRIGAEQSNE 181 Query: 145 GAGQYFTPRPLIKTIIHLLKPQPRE--------VVQDPAAGTAGFLIEADRYVKSQTNDL 196 AG++FTPR +IK +++LL + + DPA GT G L A+ Y++ +D Sbjct: 182 EAGEHFTPREVIKLMVNLLLAPEEDLAKSDVVKTIYDPACGTGGMLSVAEEYIRHLNSDA 241 Query: 197 DDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEG-NLDHGGAIRLGNTLGSDGE 255 G + + + L+ + N+ G Sbjct: 242 RP------------HLYGQDWNDEAWAVCKSDMLIKGEDADNIILGDTFTRDGFDRDSDG 289 Query: 256 NLPKAHIVATNPPFGSAAGT---------------NITRTFVHPTSNKQLCFMQHIIETL 300 N + NPPFG ++ L F+QH+I + Sbjct: 290 NKWIFDYMLANPPFGVEWKQQQKYIQKEADELGYAGRFGAGTPRINDGALLFLQHMISKM 349 Query: 301 ----HPGGRAAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTN 353 G R +V + LF G ++IRR +++ L I+ LP +FY G+ T Sbjct: 350 RPVNKDGSRIGIVFNGSPLFTGDAGSGESEIRRWIIENDWLEAIVALPEQLFYNTGIATY 409 Query: 354 VLFFTKGTVANPNQDKNCTDDVWV-YDLRTNMPSFGKR------TPFTDEHLQPFERVYG 406 + T D + ++ + +R P H+ R+Y Sbjct: 410 IWVITNRKAKERKGKVQLIDARNFWVPMEKSLGNKRRRIGDPQDRPKDPNHIAEITRIYE 469 Query: 407 EDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDIS 466 G + + + +E E+ S+ N D + K + E + Sbjct: 470 NFQDGETR----TFFLDGKEKELVVSKLFDNDDFG-----YHKITVERPLRLNFQATAER 520 Query: 467 WLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALMRELGAS 510 + ++ +L + + ++A +R L A Sbjct: 521 IARLEEQTAFKNLASSNKKNETVRQQEIEAGRARQQEIRNLLAD 564 >UniRef50_Q3J7Q6 N-6 DNA methylase n=7 Tax=Bacteria RepID=Q3J7Q6_NITOC Length = 661 Score = 268 bits (684), Expect = 5e-70, Method: Composition-based stats. Identities = 113/582 (19%), Positives = 198/582 (34%), Gaps = 97/582 (16%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK---ETGQEA--------EYL 50 N++ A LW + D LR G Y + L+ + E ++ ++ Sbjct: 5 NHSQTAAFLWSIADLLR-GDFKQSQYGRIILPFTLLRRMECVLEPTKDKVVQQATVHQHK 63 Query: 51 PEGYRWDDLKSRIGQEQLQFYR-------------------KMLVHLGEDDKKLVQAV-F 90 P+ R L+ G LQF+ D ++ + F Sbjct: 64 PDHVREMLLRRAAGD--LQFFNASPLTLGTLSDTQTAADLMSYAQSFSTDACEIFEHFEF 121 Query: 91 HNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYF 150 N ++ + +V + D S G ++E L+++ A + AG++F Sbjct: 122 ENFVQQLSSANLLYQVVQRFAATDL--SPARISNFGMGIIFEELIRRFAESSNETAGEHF 179 Query: 151 TPRPLIKTIIHLLKPQPRE--------VVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGD 202 TPR ++ L+ + + DP AGT GFL E D Y++S Sbjct: 180 TPRDIVHLTTSLVITGQDDKLAPNRIVTIYDPTAGTGGFLSEGDEYIQS----------- 228 Query: 203 TQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDG--ENLPKA 260 ++ + G EL P + + + L+ + I+LGNTL +D + Sbjct: 229 -ISEKVSVSLHGQELNPESYAICKADMLIKGQDV-----ANIKLGNTLSNDQLTGPEHRF 282 Query: 261 HIVATNPPFGSAAGT---------------NITRTFVHPTSNKQLCFMQHIIETLHP--- 302 + +NPPFG + S+ L F+ H++ + Sbjct: 283 DFMLSNPPFGVEWKKVQKQITGEHKHKGFNGRFGPGLPRVSDGSLLFLLHLVSKMRDPRD 342 Query: 303 -GGRAAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFT 358 G R +++ + LF GG ++IRR L+ + I+ LPT +FY G+ T V + Sbjct: 343 GGSRIGIILNGSPLFTGGAGSGESEIRRYLLQHDLVEAIVALPTDMFYNTGIATYVWLLS 402 Query: 359 KGTVANPNQDKNCTDDVW-VYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTE 417 A D +R ++ S KR T E + +YG + Sbjct: 403 NHKPAERRGKVQLIDGSQHFAKMRKSLGS--KRQYVTAEQINELVCLYGAFEETPQSKI- 459 Query: 418 GEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDAD 477 + NA E + + R +E D+ ++D Sbjct: 460 --FPINAFGYRRITVERPLRLNFQASAERIDNVLQEKAIQKLDDTARQQLADALGAMDPS 517 Query: 478 SLPEPDVLAAEAMGELVQA------LSELDALMRELGASDEA 513 L A+ + + + A E AL+ LG D Sbjct: 518 PLYRNREQFAKLLKKTLTAHGVSLSTPEQKALLNGLGKRDPK 559 >UniRef50_A0YWS1 Type I restriction-modification system methyltransferase subunit n=2 Tax=Bacteria RepID=A0YWS1_9CYAN Length = 694 Score = 267 bits (683), Expect = 5e-70, Method: Composition-based stats. Identities = 98/562 (17%), Positives = 173/562 (30%), Gaps = 91/562 (16%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAE------------- 48 N +WK+ D LR G + Y + + ++ L+ + + Sbjct: 3 NFQATADFIWKIADLLR-GNYQRREYPDVILPMVVLRRLDQAMENTRQAVRDEWNKYHGK 61 Query: 49 -----------------YLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAV-F 90 Y Y W L Q L D +++ F Sbjct: 62 LENLDPLLRAAAGDSPVYNTSEYYWRRLLDDRP-NLAQNLINYLNGFSPDVLDIIEKFDF 120 Query: 91 HNVSTTITEPKQITALVSNMDSLDWYNGAHG---KSRDDFGDMYEGLLQKNANETKSGAG 147 + + + L +D + + G ++E L+ + + AG Sbjct: 121 RRQVSRLNTANLLPILFDEFTKIDLHPPREDGTGVDNLEMGRIFEHLIYRFNQDNNETAG 180 Query: 148 QYFTPRPLIKTIIHLLKPQPR--------EVVQDPAAGTAGFLIEADRYVKSQTNDLDDL 199 ++FTPR +I+ ++ LL P+ + DPA GT G L EA Y+ D+ Sbjct: 181 EHFTPREVIRLMVRLLFPEDDPTLHPDNILTIYDPACGTGGMLTEAKEYIH-------DI 233 Query: 200 DGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPK 259 G E+ P +A + LL + I GN+ DG + Sbjct: 234 QTRKYQKIGQVHLFGQEINPTAFAVAKSDFLLKGEDPRR-----ITFGNSFSEDGYPERR 288 Query: 260 AHIVATNPPFGSAAG---------------TNITRTFVHPTSNKQLCFMQHIIET--LHP 302 + +NPPFG + ++ L F+QHI+ Sbjct: 289 FRYMLSNPPFGVDWKKVQYIIKREYETQGFDGRFGAGLPRINDGSLLFLQHILSKRAKEE 348 Query: 303 GGRAAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTK 359 R +V + LF G ++IRR +++ L I+ LP +FY G+ T + Sbjct: 349 PSRTVIVFNGSPLFTGDAGSGESNIRRWIIENDWLEGIVALPDQLFYNTGISTYLWVLNN 408 Query: 360 GTVANPNQDKNCTDDVWVY-DLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEG 418 + V Y +R ++ KR T+E +Y G + Sbjct: 409 RKSNKRKGKIQLVNAVNFYQKMRKSL--GNKRNEITEEQYNEIANIYHAFSTGDNCLIFD 466 Query: 419 EWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADS 478 F +V E + A R + + L + + Sbjct: 467 NEDFGYRRIKV---ERPLRLNFSAAPER---------LARLPEQSGFAALAESKKKKEED 514 Query: 479 LPEPDVLAAEAMGELVQALSEL 500 + ++ AL +L Sbjct: 515 QKADIEAGKDWQERIINALKQL 536 >UniRef50_B1VGZ7 Type I restriction-modification system, methyltransferase subunit n=2 Tax=Corynebacterium RepID=B1VGZ7_CORU7 Length = 644 Score = 267 bits (683), Expect = 6e-70, Method: Composition-based stats. Identities = 106/578 (18%), Positives = 195/578 (33%), Gaps = 94/578 (16%) Query: 1 MNNNDL-VAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK--------------ETGQ 45 M+ +L + +W D V ++Y + + + L+ + E Q Sbjct: 1 MSTAELNQSAVWNTADKFLRSIVEPEDYGDYILPMTVLRRLECILEPTKGEVLDLVEILQ 60 Query: 46 EAEYLPEGYRWD---------------DL--KSRIGQEQLQFYRKMLVHLGEDDKKLVQA 88 E Y E W+ DL +++ + + + + A Sbjct: 61 EEGYSEEMIDWEVRVRFGLSFYNSSRLDLTRIAQLDDHVYEALMDYVGAFSSSVRDVWDA 120 Query: 89 V-FHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAG 147 F T+ ++ +V + ++D GD++E ++ K + AG Sbjct: 121 FDFAVKMKTLENASRLWPVVKHFATIDM--SLDALPDAQMGDLFEHVMYKAFDTKGKAAG 178 Query: 148 QYFTPRPLIKTIIHLLKPQPR---------EVVQDPAAGTAGFLIEADRYVKSQTNDLDD 198 ++TPR I+ ++ +L V DP AGT G L+ A R +K D Sbjct: 179 AFYTPRDAIRLMVDILFASDDVGLTAEGASRTVYDPTAGTGGMLLVAARALKELNPD--- 235 Query: 199 LDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLP 258 I G EL+ + + L+ E AIR G+TL +D Sbjct: 236 ---------IEVVLAGQELMSTGYAIGKADLLIQGGEP-----DAIRHGDTLLTDLYEGE 281 Query: 259 KAHIVATNPPFGSAAG-------------TNITRTFVHPTSNKQLCFMQHIIETLHP--- 302 + + +NPPFG+ + + + Q+ F+ H+ L P Sbjct: 282 QFEYILSNPPFGTDWEVQQQSVKEQAKVPGSRFSHGLPSKDDGQMLFLAHVASKLMPAGP 341 Query: 303 ---GGRAAVVVPDNVLFEGGKGT---DIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLF 356 GGR AVV + LF G + IR L++ + I++LPT +FY G+ T V Sbjct: 342 NGAGGRGAVVSNGSPLFTGAPESGPDKIRAWLLENDLVDAIIQLPTNMFYGTGISTYVWI 401 Query: 357 FTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRT 416 + D + + KR + + Y + Sbjct: 402 LDTNKEEHRKGFVQLIDASECWSVPDKG-LGEKRREMKEPDRKRVLEEYAAFEDTEISKV 460 Query: 417 EGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDA 476 + +V + L + + + + + L D + Sbjct: 461 LTPADLGFRDVKVTKQKR-------LRVAVTPEAVAQVLEHKSAVPEHAEVLADVADVKF 513 Query: 477 DSLPEPDVLAAEAMG-ELVQALSELDALMRELGASDEA 513 + LPE AA+ G +++ + +DA++ +G DE Sbjct: 514 NDLPEALKAAAKKRGVKMLAGM--IDAVLEAVGVPDEN 549 >UniRef50_A8ZYK3 N-6 DNA methylase n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZYK3_DESOH Length = 680 Score = 267 bits (683), Expect = 6e-70, Method: Composition-based stats. Identities = 108/627 (17%), Positives = 204/627 (32%), Gaps = 138/627 (22%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETG---------------- 44 + L + L+ + D LRD ++Y + + SLLF K + Sbjct: 2 ITKQALGSTLFGMADILRD---KVEDYKSYILSLLFFKRLSDNYTWESENGIKEFVKDNK 58 Query: 45 --------------QEAEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAV- 89 + +P+G W D+++ ++ K + + + + L + Sbjct: 59 REPNDREKEIILRRKHDFTIPDGCFWGDVRNAPLDKKNDALNKAVNAIADSNTSLKGVIN 118 Query: 90 --------FHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANE 141 P+ ++ L++ +D++D N S D GD YE L+++ A+E Sbjct: 119 TVRWNEPSPDGSGGKKLHPEVLSPLINYLDAVDLSN--RNASVDILGDAYEYLIKRFADE 176 Query: 142 TKS--GAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDL 199 ++ AGQ++TP+ ++ I+ LKPQ + DP G+ GFLI A +Y+K T Sbjct: 177 NRNGTTAGQFYTPQEVVDIIVRYLKPQKGSTLYDPTCGSGGFLINAAKYIKKTTGT---- 232 Query: 200 DGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGE-NLP 258 Q + G E V T +A +N +LH ++ + G ++ D + + Sbjct: 233 -------QKNIRLFGQEDVWNTWAIANINMILHGLDAAIKKGDTLKDPKFTEEDNDLTIK 285 Query: 259 KAHIVATNPPFGSAAG-----------------------------------TNITRTFVH 283 +V N PF + Sbjct: 286 TFDLVMANFPFSQENWWKNGEPKRDKKGKPITNKDGSPQLNYPGKEDFNDPYERFDYGIP 345 Query: 284 PTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEG---------------GKGTDIRRDL 328 P SN F+QHI+ +++ G+A VV P VLF G IRR Sbjct: 346 PFSNGDFAFLQHIVASMNESGKAGVVCPQGVLFRGQPQKTEEEDGQNRKADDEYLIRRGF 405 Query: 329 MDK------------CHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVW 376 + + I+ LP +FY + ++L F K + V Sbjct: 406 LQGPVNKDGEFVHAINIIDAIVVLPGNLFYGTTIPGSILLFNKNKPEERK------NKVL 459 Query: 377 VYDLRTNM--PSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEE 434 + + + + + + + + + Sbjct: 460 MVYAAKEGWYKEESNMNTLLPQDILRISTILESWGDMEIAKAWITSQKSRLRDLIQEELD 519 Query: 435 NKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELV 494 K + L ++E I AK L + +P + + Sbjct: 520 FKKGEIDLD-------TQEDIELAKDKHQKAGELVKAKEAEGK---KPTQAQLNNLQKAK 569 Query: 495 QALSELDALMRELGASDEADLQRQLLE 521 + L +L + A E +++ + Sbjct: 570 ETLEKLIKQKEQRIADAEGQAEKERIA 596 >UniRef50_C0E6A6 Putative uncharacterized protein n=2 Tax=Corynebacterium RepID=C0E6A6_9CORY Length = 500 Score = 267 bits (682), Expect = 8e-70, Method: Composition-based stats. Identities = 121/514 (23%), Positives = 206/514 (40%), Gaps = 72/514 (14%) Query: 26 NYVNELASLLFLKMCKETGQEAEYLP-----------------EGYRWDDLKSRIG-QEQ 67 + + + LLF++ E E + E RW +L E Sbjct: 2 DVIEQFTYLLFIRQLDERQNELDQKKLLGVPVHDEEIIFTTEQEDLRWKNLMQIGDPTEL 61 Query: 68 LQFYRKMLVHLGED-DKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDD 126 + + + + +F + S I+ P + + ++ LD N RD Sbjct: 62 HETMATRVFPFLKTMGTGTLAVLFRDASFGISSPSTLWKTMELINDLDIKN------RDI 115 Query: 127 FGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEAD 186 GD+YE +L K A GQ+ TP+ +I ++ L+ P+ E + DPA GTAGFLI A Sbjct: 116 TGDLYEYMLSKLATS--GTNGQFRTPQHIIDLLVELMAPKLGERIIDPACGTAGFLINAS 173 Query: 187 RYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE-GNLDHGGAIR 245 ++K + D + + ++ F G + R+A MN +H E N+ + ++ Sbjct: 174 EWMKRTYRE-DLYNTNERERFYRDTFTGYDFDRSMVRIAAMNSYMHGFEKPNISYRDSL- 231 Query: 246 LGNTLGSDGENLPKAHIVATNPPFGSAAGTNITR---TFVHPTSNKQLCFMQHIIETLHP 302 G G ++ NPPF + + T +L F+ + L Sbjct: 232 -GEFPEMSGGGGDLYDVILANPPFSGSLDAERVDPVIRKLANTKKTELLFLARFLTLLKV 290 Query: 303 GGRAAVVVPDNVLFEGGK-GTDIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKG 360 GGRAAV+VP+ VLF K +R++L++ L +++LP+G+F GV T VL FTK Sbjct: 291 GGRAAVIVPEGVLFGSTKAHKVLRKELVENQKLDAVIKLPSGVFKPYSGVSTAVLCFTKT 350 Query: 361 TVANPNQDKNCTDDVWVYDLRTNMPSF-GKRTPFTDEHL------QPFERVYGEDPHGLS 413 D TD+VW YD+ + S KRTP E+L +P + Sbjct: 351 -------DSGGTDEVWFYDMLADGRSLDDKRTPLLPENLLGPTPHEPITAENQFEDPAPV 403 Query: 414 PRTEGEWSFN---------------------AEETEVADSEENKNTDQHLATSRWRKFSR 452 T+ + + N E++ ++ + T L+ +R+++ Sbjct: 404 QLTDEQLAKNNLPDLLARFRNRTTTEPGRARTEQSFTVGIDDIRATGYELSMNRYKEIVF 463 Query: 453 EWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLA 486 E T + ++ + D AD+L L Sbjct: 464 EDEDTRDPKDI-LNEITQLDGEIADALSTISGLL 496 >UniRef50_Q5NWK9 Type I restriction-modification system (Specificity subunit) n=3 Tax=Betaproteobacteria RepID=Q5NWK9_AZOSE Length = 540 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 104/445 (23%), Positives = 179/445 (40%), Gaps = 50/445 (11%) Query: 52 EGYRWDDLK-SRIGQEQLQFYRKMLVHLG-EDDKKLVQAVFHNVSTTITEPKQITALVSN 109 + +RW + G+ ++F R + E H I EP + +V+ Sbjct: 87 DRFRWSVWATALSGEPLVRFLRDEVFAFFTEMAGNGAVNFMHGARLVIDEPTVLNQVVTL 146 Query: 110 MDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPRE 169 +D L D GD++E +L++ GQ+ TPR +I+ I+ ++ P+ E Sbjct: 147 VDGLHL----DRADADTKGDLFEHVLRQIKQA--GELGQFRTPRHIIRAIVEIIDPKIGE 200 Query: 170 VVQDPAAGTAGFLIEADRYVKSQTNDL------------------DDLDGDTQDFQIHRA 211 + DPAAGTAGFL+ A +++ + D L + Sbjct: 201 TIYDPAAGTAGFLVAAYNHIRLANSSPAGIQSVELDGKMQTRGLGDKLSTAQLSALQSKT 260 Query: 212 FIGLELVPGTRRLALMNCLLHDIEG-NLDHGGAIRLGNTLGSDGE-----NLPKAHIVAT 265 F G ++ P RLA MN L + ++ + TL ++ + H+V Sbjct: 261 FFGNDVDPKMVRLATMNLTLRGLPNVHILLRNVLTT--TLDNERKADLCLPQEGYHVVLA 318 Query: 266 NPPFGSAAGTNITRTFVH--PTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEG-GKGT 322 NPPF + V T+ +L F+++++++L PGGR V+VP+ VLF G Sbjct: 319 NPPFSGRVDKDRIVDDVKIGTTTATELLFLKYMMDSLRPGGRCGVIVPEGVLFGSTGAHK 378 Query: 323 DIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLR 381 ++RR L++ + ++ LP G+F GVKT+VLFF KG T++V + Sbjct: 379 ELRRQLIENNRVEAVMSLPGGVFQPYSGVKTSVLFFRKG---------GRTENVLFLHVD 429 Query: 382 TNMPSFGKRT--PFTDEHLQPFERVYGEDPHGLSPRTEGEWSFN-AEETEVADSEENKNT 438 + P + L Y + E + AD+ + Sbjct: 430 NDGYKLDANHDTPIEADDLPGLVAAYRDREANREAWASREPQAEWSAPWWFADAAALRAN 489 Query: 439 DQHLATSRWRKFSREWIRTAKSDSL 463 D +L+ R+R S+ + L Sbjct: 490 DFNLSAGRYRPMSQSQVEHRDPRKL 514 >UniRef50_C6BRN9 N-6 DNA methylase n=26 Tax=Bacteria RepID=C6BRN9_DESAD Length = 489 Score = 266 bits (680), Expect = 1e-69, Method: Composition-based stats. Identities = 113/508 (22%), Positives = 189/508 (37%), Gaps = 70/508 (13%) Query: 6 LVAKLWKLCDNLRD--GGVSYQNYVNELASLLFLKMCKETG------------QEAEYLP 51 + D L G S +Y + + +LFLK + + Sbjct: 2 FEQTFKNIDDVLWKEAGCSSELDYTEQTSWMLFLKYLDDLEAARAEDEELRGNDYEFIID 61 Query: 52 EGYRWDDLKS-------------RIGQEQLQFYRKMLVHLGEDDKK----------LVQA 88 +RW + G + + + + L + K+ + Sbjct: 62 AEHRWSSWAAPKNADGSFDHDSALTGDDLITYVDEELFPYLKGFKQRASSADTIEYKIGE 121 Query: 89 VFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQ 148 +F + + + MD L + K + + +YE ++ G+ Sbjct: 122 IFGEIKNKFQSGYSLRDALELMDKLQF---KSQKEKHELSHLYETKIKNMG-NAGRNGGE 177 Query: 149 YFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVK-SQTNDLDDLDGDTQDFQ 207 Y+TPRPLI+ +I + P E + D A G+AGFL E+ +++ L D Sbjct: 178 YYTPRPLIRAMIKVASPTIGETIYDGACGSAGFLCESYDHLRYGSDGKEAKLSVDQLRSL 237 Query: 208 IHRAFIGLELVPGTRRLALMNCLLHDIE-GNLDHGGAIRLGNTLGSDGENLPKAHIVATN 266 F G E +A+MN +LH I+ N+ H + +D + + I+ N Sbjct: 238 QTSTFYGKEKKSLAYVIAIMNMILHGIDTPNILHTNTLADN---LADVQEKDRYDIILAN 294 Query: 267 PPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEG-GKGTDIR 325 PPFG I + F T F+QH I+ L GGRAAVV+ + L +R Sbjct: 295 PPFGGKERKEIQQNFPIKTGETAFLFLQHFIKYLKAGGRAAVVIKNTFLSNSDNASKSLR 354 Query: 326 RDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMP 385 ++L++ C+LHT+L P G F GVKT VLFF KG T W Y L Sbjct: 355 KELLESCNLHTVLDCPGGTFLGAGVKTVVLFFEKGAA---------TRKTWYYQL-DPGR 404 Query: 386 SFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATS 445 S GK P D+ L+ F + + +E++ V D ++ L+ Sbjct: 405 SLGKTNPLNDDDLKEFIELQKDQQE-------------SEKSWVVDFKDVDQESFDLSVK 451 Query: 446 RWRKFSREWIRTAKSDSLDISWLKDKDS 473 +R+ + ++ L + + Sbjct: 452 NPNAPEEAPLRSPEEILAEMVELDKETA 479 >UniRef50_C8RRG5 Type I restriction-modification system, M subunit N-6 adenine-specific DNA methylase n=2 Tax=Corynebacterium RepID=C8RRG5_CORJE Length = 689 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 103/601 (17%), Positives = 194/601 (32%), Gaps = 109/601 (18%) Query: 4 NDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKET-------------------- 43 V+ +W + + LR G Y + + L Sbjct: 13 TSHVSLIWNIAEILR-GDYKEHEYGDVVLPFTVLTRLDSVLVDTKQAVLDIKATSVPNKI 71 Query: 44 --------GQEAEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAV-FHNVS 94 + + L Q + +++++A F+NV Sbjct: 72 KELRYAKETGYPFWNTSNFTLKTLLD-DADNLEQNLTYYVQAFAPAAREVMEAYNFYNVI 130 Query: 95 TTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRP 154 + + + ++ S S D G ++E L+++ + + AG++FTPR Sbjct: 131 ERLDKSDLLYHVLKEFTSAKVNLHPDVVSNDQMGYIFEELIRRFSELSNETAGEHFTPRE 190 Query: 155 LIKTIIHLLKPQPRE-----------VVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDT 203 +I +++LL + + DP GT G L A ++V Sbjct: 191 VISLMVNLLFNPEEDINRLCADGAMASLYDPGVGTGGMLSTAAQHVNDLNESA------- 243 Query: 204 QDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIV 263 G EL P T +A + ++ + I GN+L +D + + Sbjct: 244 -----RLEVYGQELNPQTYAVAKSDIMIKG-----ERQERIYFGNSLTNDKTAGMRFDYM 293 Query: 264 ATNPPFGSAAGT---------------NITRTFVHPTSNKQLCFMQHIIETLHP------ 302 NPPFG S+ F+QH+I + P Sbjct: 294 LCNPPFGVNWKKYADPILDEAEHKGYQGRFGAGTPRVSDGSFLFLQHMISKMKPYDPMDL 353 Query: 303 ----GGRAAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVL 355 G R +V + LF GG ++IRR +++ L I+ LP +FY G+ T + Sbjct: 354 VNAAGTRIGIVFNGSPLFTGGAGQGESEIRRWILENDWLEAIIALPDQMFYNTGILTYIW 413 Query: 356 FFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPR 415 + + D + R P KR T+ ++ R+YG R Sbjct: 414 VLSNKKERHRKNKVQLIDATQYFQ-RMRKPLGEKRKELTETNIADITRIYGAFQETEESR 472 Query: 416 TEGEWSFNA---------EETEVADSEENKNT-------DQHLATSRWRKFSREWIRT-A 458 F + A + ++ D ++ R E I Sbjct: 473 IFETEDFAYHEVVVERPLRLSFQATPDAIESLKQTKPFTDLAMSRKRTEPARTEEIDAGK 532 Query: 459 KSDSLDISWLKDKDSID-ADSLPEPDVLAAEAMGELVQA--LSELDALMRELGA-SDEAD 514 + + I+ L+ D+ + E L E++ + + ++ L ++ LG + +AD Sbjct: 533 RVQNAIIATLEALDAERVYLNRDEFTDLIRESIKKRGEKIGIAALRKIVAGLGTKNPDAD 592 Query: 515 L 515 + Sbjct: 593 I 593 >UniRef50_C3NN83 N-6 DNA methylase n=1 Tax=Sulfolobus islandicus Y.N.15.51 RepID=C3NN83_SULIN Length = 521 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 136/549 (24%), Positives = 225/549 (40%), Gaps = 75/549 (13%) Query: 4 NDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYL------------P 51 N +LW + + R V Y+ E + L FL++ E E + P Sbjct: 10 NSFGDELWNIANIFRSDIVKPTEYLEEFSYLFFLRLFDEQEIYQENIAKELGEDYKSTIP 69 Query: 52 EGYRWDDL--------KSRIGQEQLQFYRKMLVHLGE----------DDKKLVQAVFHNV 93 YR+ + +S+ + +F KM + L +D+ +++ +F N Sbjct: 70 SEYRFFNWACDPRNYARSKGFKTVTEFLDKMFLDLANLPDTGDPKIDEDRSIIKKIFSNK 129 Query: 94 STTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153 + + + ++ + L G G+ D G YE L+ K + GQ+FTPR Sbjct: 130 TRRMQNDNTVIQVIDRLRLLKL-PGDEGRKFDALGRGYEFLMYKLGQQ--GNYGQFFTPR 186 Query: 154 PLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTND--LDDLDGDTQDFQIHRA 211 ++ ++ ++ P P EV+ DPAAGT GFL++A YVK + ++ D + + ++ Sbjct: 187 NIVSFMVRIIDPNPGEVILDPAAGTGGFLVKAFEYVKQKIERQITNEADKEIKIRELKHN 246 Query: 212 FIGLELVPGTRRLALMNCLLHD-IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFG 270 G+E P +L LMN LH N ++ A+ + G KA ++ TNPPFG Sbjct: 247 LYGIEKAPDVFKLGLMNLRLHGDGSSNFENLDAL----SGSVQGAYKEKADVITTNPPFG 302 Query: 271 SAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMD 330 T F + + F+Q I++ + PGGR A V+ + +LF IRRDL+D Sbjct: 303 -PFSGEPTGNFKYKFKRFETYFIQAIMDMVKPGGRVATVMLEGLLFNENYEG-IRRDLVD 360 Query: 331 KCHLHTILRLPTGIFYAQG-VKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGK 389 K + + LP G+F KT++L F + PN+ + TD V +++ ++ Sbjct: 361 KFKIEAVFSLPAGVFLPYSAAKTDILVFRR-----PNKGEKTTDKVLFFNIESDGYELKP 415 Query: 390 -RTPFTDEHLQPFERVYGEDP---HGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATS 445 R P D + G+ P GE E+ V D EE + D L + Sbjct: 416 TRKPIGDCDKKGDIDGCGDLPLALEIYQKFKRGEEIPQTEQYFVVDVEEIRKHDYRLDIN 475 Query: 446 RWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALMR 505 +RK E +P L L A+ L+ L + Sbjct: 476 VYRKVRLEE-----------------------ENADPKQLIELMETNLSDAMKRLNELKK 512 Query: 506 ELGASDEAD 514 LG DE + Sbjct: 513 ILGIGDENE 521 >UniRef50_Q12V00 N-6 DNA methylase n=24 Tax=cellular organisms RepID=Q12V00_METBU Length = 554 Score = 266 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 96/450 (21%), Positives = 164/450 (36%), Gaps = 70/450 (15%) Query: 66 EQLQFYRKMLVH--LGEDDKKLVQAVFHNVSTTITE--------PKQITALVSNMDSLDW 115 E LQ + +G + + + +F ++ ++ I+ ++S++D +D+ Sbjct: 147 EDLQGILNNIQSSTMGTESEDDFENLFEDMDLNSSKLGKTPAARNALISKVLSHLDKIDF 206 Query: 116 YNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPRE--VVQD 173 D GD YE L+ + A+ AG+++TP+ + + L+ + V D Sbjct: 207 --QLEHTELDVLGDAYEYLIGQFASGAGKKAGEFYTPQQVSTILAKLVTTGKKRLRSVYD 264 Query: 174 PAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD 233 P G+ L+ R V+ + AF G EL T LA MN +LH+ Sbjct: 265 PTCGSGSLLLRVAREVEDVS-----------------AFYGQELNRTTYNLARMNMILHN 307 Query: 234 IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNI----TRTF-----VHP 284 + I+ +TL + + NPPF + N F + P Sbjct: 308 VHYRKF---DIKQEDTLEYPQHLGMQFEAIVANPPFSAQWSANPLFSSDERFSQYGKLAP 364 Query: 285 TSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLM-DKCHLHTILRLPTG 343 S F+QH+I L G A+V+P VLF G IR+ L+ +K +L ++ LP Sbjct: 365 KSKADYAFVQHMIHHLAENGSMAIVLPHGVLFRGAAEGHIRQFLIEEKNYLDAVIGLPAN 424 Query: 344 IFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFER 403 +FY + T VL F K DD+ D + + + Sbjct: 425 VFYGTSIPTCVLVFKKCREN--------PDDILFIDASQDYEKVKTQNQLRPCDIDKIVD 476 Query: 404 VYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSL 463 Y + + VA +E K D +L R+ E + + Sbjct: 477 TYRNRKE------------IEKYSHVASLDEIKENDYNLNIPRYVDTFEEE------EPI 518 Query: 464 DISWLKDKDSIDADSLPEPDVLAAEAMGEL 493 DI + + + + D A EL Sbjct: 519 DIDAVAASLLELDEKMSKIDENIAGFCEEL 548 Score = 63.6 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 6/77 (7%) Query: 3 NNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK---ETGQEAEYLPEGYRWDDL 59 L +LW + + LR G ++ + + + +F K E + P+G + D+ Sbjct: 6 KKQLEQQLWNIANELR-GKMNADEFRDYILGFIFYKYLSNKIEIYADEILKPDGIAFKDI 64 Query: 60 KSRI--GQEQLQFYRKM 74 K G+E ++ + Sbjct: 65 KEDTELGKEFIEAISEA 81 >UniRef50_Q5HSN6 Type I restriction-modification system, M subunit n=37 Tax=Proteobacteria RepID=Q5HSN6_CAMJR Length = 494 Score = 265 bits (677), Expect = 3e-69, Method: Composition-based stats. Identities = 120/504 (23%), Positives = 217/504 (43%), Gaps = 61/504 (12%) Query: 6 LVAKLWKLCDNLR-DGGVS-YQNYVNELASLLFLKMCKETGQEAE------------YLP 51 + K+ K+ D LR D G+S +Y ++ +LFLK + + L Sbjct: 1 MQNKVDKITDILRRDDGISGAMHYTEQIGWILFLKFLDDYETNLKDLAFLDGKDYKSILQ 60 Query: 52 EGYRWDDLKS------------RIGQEQLQFYRKMLVHLGEDDKK---------LVQAVF 90 E + W + G + L+F K L ++ K + +F Sbjct: 61 EKFSWSVWAAPKKDGKLDVKNALSGSDLLEFVNKELFPYLKNFKNNDDFKSIEYKIGGIF 120 Query: 91 HNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYF 150 + I + +++ +D + + G++YE LL+ ++ +G+++ Sbjct: 121 EFIDNRIANGHTLREVINIIDEISFNKEDEVF---ALGEVYEKLLKDMGSD-GGNSGEFY 176 Query: 151 TPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVK---SQTNDLDDLDGDTQDFQ 207 TPRPLIK ++ ++ P+P+E + DP+ G+ GFL+E+ ++ +L + +F Sbjct: 177 TPRPLIKAMVEVIDPKPKERIYDPSCGSCGFLVESFLHILYKDRTKGKKANLSVEELEFL 236 Query: 208 IHRAFIGLELVPGTRRLALMNCLLHDIE-GNLDHGGAIRLGNTLGSDGENLPKAHIVATN 266 + A G E P + + +MN +LH+++ N+ + N +D K ++ N Sbjct: 237 KNDALFGKEKTPLSYAMGVMNMILHEVKSPNIIKTNTL---NKKITDITQSEKYEVILAN 293 Query: 267 PPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLF-EGGKGTDIR 325 PPFG I F ++ +L F+QHI+++L GR A++VP+ VLF ++ Sbjct: 294 PPFGGKEKEQIQENFPIKSNATELLFLQHILKSLKNNGRCAIIVPEGVLFQNSNAFVSVK 353 Query: 326 RDLMDKCHLHTILRLPTGIFYAQG-VKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNM 384 +DL+D +L +L LP+G+F VKTNVLFF+KG D V+ Y+L Sbjct: 354 KDLLDDFNLECVLSLPSGVFLPYSAVKTNVLFFSKGKKCICEG-----DGVYYYEL-IPP 407 Query: 385 PSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLAT 444 K P H + F + Y E + + +++ N ++ L T Sbjct: 408 YKLTKNKPLEYTHFKEFLKCYKERKITANSWLVSKKELEERNYDLSAKNPNVKEEKILKT 467 Query: 445 SRWRKFSREWIRTAKSDSLDISWL 468 S E I + ++L I Sbjct: 468 S-------EEILNSLEENLKIQQE 484 >UniRef50_A1BH53 N-6 DNA methylase n=4 Tax=Bacteria RepID=A1BH53_CHLPD Length = 662 Score = 264 bits (675), Expect = 5e-69, Method: Composition-based stats. Identities = 88/500 (17%), Positives = 153/500 (30%), Gaps = 93/500 (18%) Query: 3 NNDLVAKLWKLCDNLR-DGGVSYQNYVNELASLLFLKMCKETGQEAE------------- 48 L +LW D LR + G+ Q Y + L+FL Sbjct: 13 TAALEKRLWDAADQLRANSGLKAQEYSAPVLGLIFLLFADVRFAARRAELESAKSSTRRG 72 Query: 49 ---------------YLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNV 93 YL R+ L +R E + + E + V Sbjct: 73 SRVDDPAAYHAEGVLYLSPEARFVYLLNRPEAENIGVMVNEAMRAIEKHNPQLAGVLPKT 132 Query: 94 STTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153 + + + L+ + + D FG +YE L + A G G+++TP Sbjct: 133 Y-YLFDSPLLKQLLKKVSEI-----PSSMDYDAFGRIYEYFLGEFAMSEGQGGGEFYTPV 186 Query: 154 PLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFI 213 +++ + +++P + DPA G+ G + + R+V Q+ + Sbjct: 187 SIVRLLTEVIEPYHG-RILDPACGSGGMFVSSARFVAQH----------KQNPSAELSIH 235 Query: 214 GLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENL-PKAHIVATNPPFGSA 272 G+E T RL +N +H +EG + HGG + N+ D + V NPPF Sbjct: 236 GIEKTDETGRLCRLNLAVHGLEGRIMHGGNV---NSYYDDPHDATGNFDFVLANPPFNVN 292 Query: 273 AGTN-----------ITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKG 321 A + T N ++Q L+ GRA V+ ++ Sbjct: 293 AVDKERLKDSVGPGRRFPFGLPRTDNANYLWIQLFYSALNERGRAGFVMANSASDARSSE 352 Query: 322 TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTV------------------- 362 +IRR L++ + ++ + +FY + + FF K Sbjct: 353 QEIRRQLIESRTVDVMVAVGPNMFYTVTLPCTLWFFDKAKARLSPPSSPALLPKVEGGEE 412 Query: 363 ------------ANPNQDKNCTDDVWVYDLRTNMPSFGK-RTPFTDEHLQPFERVYGEDP 409 N D V D R + +T + + Sbjct: 413 DLPLSRRILTERDGEGNVPNRADTVLFIDARHIYRQVDRAHRDWTPAQIGFMANLVRLWR 472 Query: 410 HGLSPRTEGEWSFNAEETEV 429 T G + EV Sbjct: 473 GEALDYTLGGDEAREKIEEV 492 >UniRef50_C5RYW3 Type I restriction-modification system methyltransferase subunit like protein n=5 Tax=Bacteria RepID=C5RYW3_9PAST Length = 533 Score = 263 bits (673), Expect = 8e-69, Method: Composition-based stats. Identities = 94/498 (18%), Positives = 177/498 (35%), Gaps = 72/498 (14%) Query: 6 LVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETG--------------------- 44 L + + LR + + + L+FLK + Sbjct: 15 LETVMMNCRNALRGKVGGNEKNRDTVMGLVFLKFVGDKFTARRAEIQAQYPEIFWENEAF 74 Query: 45 ---QEAEYLPEGYRWDDLKSRIGQEQLQ-FYRKMLVHLGEDDKKLVQAVFHNVSTTITEP 100 + YL E RW + + + + + E + L A+ N T+ Sbjct: 75 YRSENVFYLSEHARWSYIVENASSDDIAIKIDTAMADIEERNPPLKGALPQNFYATLGIG 134 Query: 101 KQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETK--SGAGQYFTPRPLIKT 158 K + S +D ++ + +D G + E LQ A ++ G+++TP +++ Sbjct: 135 K--KEIKSLIDEINKLDNNRFHEKDLIGRVQEYFLQVFAIDSGVGKEKGEFYTPSSIVEL 192 Query: 159 IIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELV 218 I L++P V DP GT G +++ ++V++ + + + + +G E Sbjct: 193 IAELIEPYNG-TVYDPCCGTGGMFVQSLKFVENHQGN-----------RKNISIVGQESN 240 Query: 219 PGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNIT 278 P T RLA MN L I NL +T D K + + NPPF + Sbjct: 241 PDTWRLAKMNLALRGIAHNLGESAV----STFTHDQWKDLKVNYIMANPPFNLKDWRDQN 296 Query: 279 R---------TFVHPTSNKQLCFMQHIIETLHP-GGRAAVVVPDNVLFEGG------KGT 322 V P SN ++ H++ L G A ++ + L GG Sbjct: 297 ELTDDPRFAGYAVPPKSNANYAWILHMLSKLDETDGIAGFLLANGALNTGGDKPDTDTEY 356 Query: 323 DIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVA---NPNQDKNCTDDVWVYD 379 IR+ L++ + I+ LP +FY+ + + N Q +N +++ D Sbjct: 357 AIRKQLIENDKVEAIIVLPREMFYSTDISVTLWIVNNNKKQRSLNGRQLRNRQNEILFMD 416 Query: 380 LR--TNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKN 437 LR + K T + + +Y G + E + E ++ Sbjct: 417 LRTLNSHIYEKKYVQLTAQEISQVCEIYFNWQTGK------NYQNIPEFCQSVSVETIRS 470 Query: 438 TDQHLATSRWRKFSREWI 455 + LA S++ +F + + Sbjct: 471 KNYSLAPSQYIEFVDKDL 488 >UniRef50_C6MCS3 N-6 DNA methylase n=2 Tax=Proteobacteria RepID=C6MCS3_9PROT Length = 772 Score = 263 bits (671), Expect = 1e-68, Method: Composition-based stats. Identities = 92/497 (18%), Positives = 171/497 (34%), Gaps = 88/497 (17%) Query: 1 MNN---NDLVAKLWKLCDNLR-DGGVSYQNYVNELASLLFLKMCKETGQE---------- 46 MN L A LW D LR + + Y + L+FLK + Sbjct: 1 MNKVQLKKLEADLWSAADTLRANSDLKSSEYATPVLGLIFLKFADNNYRRHEKAILSEYQ 60 Query: 47 -------------------AEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQ 87 YLP+ R+D L + ++ + K + E+ K ++ Sbjct: 61 QLQGTRREKPVSEIAIEQCGFYLPDHTRYDYLLNLPEEKDIAKALKEAMKAIEEYKPELE 120 Query: 88 AVFHNVS---TTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKS 144 V T T+ L+ + + D FG +YE L + A Sbjct: 121 GVLPKDEYAALTRTDKTIPQQLLRTFADI-----PANATGDLFGQIYEYFLSEFARSEGQ 175 Query: 145 GAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQ 204 G++FTPR +++ ++ +++P V DPA G+ G +++ +++ + N+L D Sbjct: 176 KGGEFFTPRSVVRLMVEIIEPH-GGKVFDPACGSGGMFVQSAQFIAAHRNELKGADSG-- 232 Query: 205 DFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVA 264 G E T +LA MN ++ + G + ++ + V Sbjct: 233 -----VYVCGQEKTQDTVKLAKMNLAVNGLRGEIKQANT-----YYEDPYDSFEQFDYVL 282 Query: 265 TNPPFG----------------------SAAGTNITRTFVHPTSNKQLCFMQHIIETLHP 302 NPPF + + N ++ +L P Sbjct: 283 ANPPFNVDDVSLSSVEKDRRFNTYGIPRNKSKVKKADEGKETVPNGNYLWISLFATSLKP 342 Query: 303 GGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTV 362 GRAA+V+ ++ DIR+ L+++ ++ +L LP+ +FY + + FF K Sbjct: 343 QGRAALVMANSASDARHSEADIRKTLIEQNLIYAMLTLPSNMFYTVTLPATLWFFDKAK- 401 Query: 363 ANPNQDKNCTDDVWVYDLRTNMPSFGK-RTPFTDEHLQPF--ERVYGEDPHGLSPRTEGE 419 D + D R + F+ EH+Q + R Sbjct: 402 --------RGDRILFIDARNIFTQIDRAHREFSAEHIQNIALISHLHKGQREKFIRLIDR 453 Query: 420 WSFNAEETEVADSEENK 436 + E + ++E+ + Sbjct: 454 YFAAGMERLIENNEKIE 470 >UniRef50_C9KLJ9 Type I restriction-modification system, M subunit n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KLJ9_9FIRM Length = 490 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 114/517 (22%), Positives = 208/517 (40%), Gaps = 63/517 (12%) Query: 4 NDLVAKLWKLCDNLRDG-GVS-YQNYVNELASLLFLKMCKETGQEAE--------YLPEG 53 +L + +L D +R+ G++ + ++ LFLK+ ++ E +PE Sbjct: 3 TNLGGLVKRLQDIMRNDPGINGDAQRIEQIIWALFLKVYDAKEEDWEMDEDDYHSIIPEP 62 Query: 54 YRWDDLK-------SRIGQEQLQFYRKMLVHLGE--------DDKKLVQAVFHNVSTTIT 98 YRW + + G+E L+F + L K++V+ +F + + Sbjct: 63 YRWQNWAHDDGTGTAYTGEELLEFVNDLFTVLKNLSITPDMPKKKRIVKTMFEETNQYMK 122 Query: 99 EPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKT 158 + + +++ +D +D + GD+YE +L++ + + AG+++TPR + Sbjct: 123 DGVLLRQVINVIDDIDL---ESYDNMHALGDIYETILKELQSAGR--AGEFYTPRAVTDF 177 Query: 159 IIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELV 218 + ++P E + D A GT GFL+ R ++ Q DD + + G+E Sbjct: 178 MADRIEPHLGERMADFACGTGGFLVSWLRELEKQIAAPDD------RALWNHSVYGIEKK 231 Query: 219 PGTRRLALMNCLLHDIE-GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNI 277 LA+ N LLH ++ ++DHG ++ D K + NPP+G + ++ Sbjct: 232 QFPYMLAITNLLLHGVDNPDIDHGNSLLHD---VLDYTEKDKFDKILMNPPYGGSEKKDV 288 Query: 278 TRTFVHPTSNKQL--CFMQHIIETLHPGGRAAVVVPDNVLF-EGGKGTDIRRDLMDKCHL 334 F ++ + FM I+ L GGRAAVV+PD LF +I++ LM +C L Sbjct: 289 MSHFPDDLADSETADLFMSVILYRLKQGGRAAVVLPDGFLFGTDNTKVNIKKKLMAECDL 348 Query: 335 HTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVY--DLRTNMPSFGKRT 391 HTI+RLP +F + TN+LFF + T+ +W Y D+ F K Sbjct: 349 HTIVRLPGSVFAPYTSITTNILFFDRTHP---------TEKIWFYRLDMPEGYKHFSKTK 399 Query: 392 PFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFS 451 P EH P + + + L + + +E +L + Sbjct: 400 PMRLEHFDPVKAWWDDRQEILEGD--------FPKAKCYTIDEIAAGGYNLDLCGFPHEE 451 Query: 452 REWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAE 488 E + + K + L + Sbjct: 452 EEILEPMELIQKYQEQRKSLNDDIDKILARITAKLED 488 >UniRef50_A1TSH9 N-6 DNA methylase n=4 Tax=cellular organisms RepID=A1TSH9_ACIAC Length = 709 Score = 261 bits (667), Expect = 5e-68, Method: Composition-based stats. Identities = 98/539 (18%), Positives = 172/539 (31%), Gaps = 101/539 (18%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKET----------------- 43 +N L +W + D LR G Y + L L+ Sbjct: 3 VNFQQLANFIWSVADLLR-GPYRPPQYERVMLPLTVLRRFDAVLAPSKEAVLKRYEPLRA 61 Query: 44 -------------GQEAEYLPEGYR------WDDLKSRIGQEQLQFYRKMLVHLGEDDKK 84 ++ P G+ + LK + + E+ +K Sbjct: 62 KNIPNIDAILNNLAKDEGGTPLGFHNHSQLDFQKLKG-DPDNIGRHLADYIAGFSENVRK 120 Query: 85 LVQAV-FHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETK 143 + + F + E ++ +VS +D + G ++E L+++ Sbjct: 121 IFERFEFDKEIEKLEESNRLYQVVSQFAEIDLH--PKRVDNITMGLVFEDLIRRFNEAAN 178 Query: 144 SGAGQYFTPRPLIKTIIHLLKPQPRE---------VVQDPAAGTAGFLIEADRYVKSQTN 194 AG +FTPR +I+ +++LL + DPA GT G L EA ++++ Sbjct: 179 ETAGDHFTPREVIQLMVNLLLEPDTSVLTQAGVIVTICDPACGTGGMLAEAQNWIRAHN- 237 Query: 195 DLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDG 254 Q G + P + +A + L+ G + LGNTL D Sbjct: 238 -----------EQATVKVFGQDYNPRSYAVAASDLLIKG-----HKDGQVVLGNTLTDDP 281 Query: 255 ENLPKAHIVATNPPFGSAAGT-----NITRTF------VHPTSNKQLCFMQHIIETL--- 300 + + NPPFG + F + ++ L F+ +++ Sbjct: 282 FPEQRFDYLLANPPFGVDWKAEKKVIDRWPNFRGYSGKLPRINDGALLFLLYMMSKFQEY 341 Query: 301 ------HPGGRAAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGIFYAQGVK 351 PG R AVV + LF GG +DIRR ++++ L I+ LP +FY G+ Sbjct: 342 KPGSRDKPGSRTAVVFNGSPLFTGGAGSGESDIRRWIIERDQLEAIVALPEQMFYNTGIG 401 Query: 352 TNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPS-----FGKRTPFTDEHLQPFERVYG 406 T + T ++ + + D R KR L R +G Sbjct: 402 TFIWVVTNRKASHRKS------KIQLIDARERYTPMKRSLGDKRRYLDQAALDDVTREHG 455 Query: 407 EDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDI 465 + R F V + R+ E ++ D+ Sbjct: 456 ALEDSKTSRVFDNADFGYRRITVLRPLRLRFQITDETRERFLNVCPELFDALQAVQEDL 514 >UniRef50_Q7NAH5 HsdM n=1 Tax=Mycoplasma gallisepticum RepID=Q7NAH5_MYCGA Length = 884 Score = 260 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 90/592 (15%), Positives = 180/592 (30%), Gaps = 112/592 (18%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAE------------ 48 M +L ++W + + +R G + +Y + + LF K + E Sbjct: 10 MTKQELAREIWAMANEMR-GNIEANDYKDYILGFLFYKYLSDKQDEYFASKNVVKDEDKK 68 Query: 49 ---------------------------YLPEGYRWDDLKSR--IGQEQLQFYRKMLVHLG 79 Y+ + G + L Sbjct: 69 QYLVALAEADKKGIASIIHKCKKDLGYYIAYENLFSTWIKNYNPGDDLSDKVSTALNSFE 128 Query: 80 ----EDDKKLVQAVFHNVSTTITEPKQIT-----ALVSNMDSLDWYNGAHGKSRDDFGDM 130 E ++ + +F ++ I + A+ + + ++ + D G + Sbjct: 129 RSILEKYEESFKDIFKDLQAGIQKLGNTAYERSEAIWNICNLINKIPITSKQDYDILGFV 188 Query: 131 YEGLLQKNANETKSGAGQYFTPRPLIKTI----IHLLKPQPREVVQDPAAGTAGFLIEAD 186 YE L+ A AG+++TP + + + + LK + DP + LI Sbjct: 189 YEYLISMFAANAGKKAGEFYTPHEVSQLMSVIAANHLKGLKNVSIYDPT--SGSLLITLG 246 Query: 187 RYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEG---NLDHGGA 243 R +K D + + E++ T + MN L++D+ G Sbjct: 247 RELKK------------IDKNVKIQYYAQEVIDTTYNITRMNLLMNDVHSVNMFAKCGDT 294 Query: 244 IRLGNTL--GSDGENLPKAHIVATNPPFG------SAAGTNITRTFVHPTSNKQLCFMQH 295 ++ + V +NPP+ + R + P S +L F+ H Sbjct: 295 LKEDWPFVYEEQKYKSKRTDAVVSNPPYSLAWNTENKENDPRFRYGLAPKSKSELAFLLH 354 Query: 296 IIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVL 355 + L G +V+P VLF GG IR++L+ H+ I+ LP+ IF+ G+ T ++ Sbjct: 355 SLYHLEDHGILTIVLPHGVLFRGGSELQIRQNLISHDHIDAIIGLPSNIFFGTGIPTIIM 414 Query: 356 FFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPR 415 + ++V D G + + + Sbjct: 415 VLKRSKTKKEK------NNVLFIDASKYFTKEGNKNKLQSSDIVRIYDAFSARED----- 463 Query: 416 TEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSL-------DISWL 468 V EE K + +L ++ S+ DI L Sbjct: 464 -------IPGFARVVSHEEIKANEYNLNIPKYIDLVDNGDNHNLYSSIFSGIPHNDIDKL 516 Query: 469 KD-------KDSIDADSLPEPDVLAAEAMGELVQALSELDALMRELGASDEA 513 D + + L + +++ E+ + + S E+ Sbjct: 517 SDFWSTFPTLKKALLNDNGKNYQLKDHDVEKVISNNEEVKKYLSDFNKSLES 568 >UniRef50_B4RYU9 Type I restriction-modification system methyltransferase subunit n=5 Tax=Bacteria RepID=B4RYU9_ALTMD Length = 548 Score = 259 bits (661), Expect = 2e-67, Method: Composition-based stats. Identities = 119/570 (20%), Positives = 221/570 (38%), Gaps = 106/570 (18%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQ-NYVNELASLLFLKMCKE-----------TGQEAE 48 M L ++ ++ + GG++ + + + LLF++ E E E Sbjct: 1 MLTGKLKNQVDEIWEAFWTGGITNPISVIEQFTYLLFIRRLDEIHTARVKNALVMETEIE 60 Query: 49 Y-----LPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKK---LVQAVFHNVSTTITEP 100 + YRW K++ Q + R + + + + Sbjct: 61 KPIFGTEQDSYRWSKFKNQDPQVMFELVRDKIFPFIKTINGEDTTFAKHMRDAIFMVPTA 120 Query: 101 KQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTII 160 + +V+ +D +D RD GD+YE +L K ++ GQ+ TPR +I+ ++ Sbjct: 121 GLLDRVVTMIDKIDM------DDRDTKGDLYEYMLSKL--QSSGTNGQFRTPRHIIQMMV 172 Query: 161 HLLKPQ----PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLE 216 + P+ +V+ DPA+GT GFL+ A+ YV++ +++ F ++ F + Sbjct: 173 QMTAPKLDGNKSDVICDPASGTCGFLMAAEEYVRNTQGGALMRPENSKHF-HNQMFNAYD 231 Query: 217 LVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENL--PKAHIVATNPPFGSAAG 274 R+ MN +LH +E + ++L GE+ K ++ NPPF + Sbjct: 232 FDQHMLRIGAMNLMLHGVE-----HPVVEYRDSLSDQGEHNIKDKFTLILANPPFKGSVS 286 Query: 275 TNITRTFVH---------------------------PTSNKQLCFMQHIIETLHPGGRAA 307 + + P+ +L F+ I+ L PGGRAA Sbjct: 287 YDDLAPDLLTALGKTPKKATAKTETDEEGNKKKKKGPSEKTELLFLALILRMLQPGGRAA 346 Query: 308 VVVPDNVLFEGG-KGTDIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANP 365 VVVPD VLF +IR+ L+++ L ++ LP+G+F GV T +LFFTK Sbjct: 347 VVVPDGVLFGSTKSHKEIRKTLVEEHKLEAVVSLPSGVFKPYAGVSTAILFFTKTNDG-- 404 Query: 366 NQDKNCTDDVWVYDLRTNMPSF-GKRTPF-------TDEHLQPFERVYGEDPHGLSPRTE 417 TD+VW YD++ + S KRTP T+ ++ GE+ +E Sbjct: 405 -----GTDNVWFYDMQADGFSLDDKRTPLIKEQALTTEADAIDYKAAEGENLEKGQAPSE 459 Query: 418 GEWSF---------------------NAEETEVADSEENKNTDQHLATSRWRKFSREWIR 456 E E++ + ++ L+ +R+++ E + Sbjct: 460 LENHKLNNIPDVLFRWQHLQNEIGRERTEQSFFVPLSDIQSNGYDLSINRYKEVVYEEVE 519 Query: 457 TAKSDSLDISWLKDKDSIDADSLPEPDVLA 486 + + +K + + + + L Sbjct: 520 YESPQVI-LKRIKALQAEMDKGIADLEALL 548 >UniRef50_B0VF74 Type I restriction-modification system methyltransferase subunit n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VF74_9BACT Length = 690 Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats. Identities = 97/612 (15%), Positives = 195/612 (31%), Gaps = 120/612 (19%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK-----ETGQEAEYLPEGYRW 56 N++ + + +W +C+ LR G Y + LK LP Y Sbjct: 4 NHSQIASFIWSICNLLR-GPYKRNEYRKVILPFTVLKRFDCILAPTKDNVLAELPHLYGK 62 Query: 57 DD--------------LKSRIGQEQLQFYRK----------MLVHLGEDDKKLVQAV-FH 91 D ++ + + + + +K+++ F Sbjct: 63 SDNIISESLIRITGVPFYNKSRLDMKKLLDDTENIAINLQSYINDFSPNVQKIIEYFAFS 122 Query: 92 NVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFT 151 + + + ++ + + G ++E L++ A ++ AG++FT Sbjct: 123 EQIARLQDANLLYLVLQRFVTDELDLSPQAVDNIQMGLVFEELIRIGAEQSNEEAGEHFT 182 Query: 152 PRPLIKTIIHLLKPQPRE--------VVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDT 203 PR +IK +++LL + + DPA GT G L A+ Y+K D Sbjct: 183 PREVIKLMVNLLLSPEADLAKSHVVKTIFDPACGTGGMLTAAETYIKELNRDAKP----- 237 Query: 204 QDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIV 263 G + + + + L+ + +G + DG + K + Sbjct: 238 -------HLYGQDWNKESYAVCCSDMLIKGEVAKIHYGCSFEQ------DGFSTDKFDYM 284 Query: 264 ATNPPFGSAAGT---------------NITRTFVHPTSNKQLCFMQHIIETLHP----GG 304 NPPFG + ++ L F+QH+I + G Sbjct: 285 LANPPFGVEWKKQQKTITDEHEKLGYNGRFGAGLPRINDGSLLFLQHMISKMRSVEEGGS 344 Query: 305 RAAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGT 361 R +V + LF G ++IR+ +++ L I+ +P +FY G+ T + T Sbjct: 345 RIGIVFNGSPLFTGDAGSGESNIRKWIIENDWLEAIIAMPDQLFYNTGISTYIWIITNKK 404 Query: 362 VANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTD------EHLQPFERVYGEDPHGLS-- 413 A+ D Y+ + KR D +H+ R++ + Sbjct: 405 EAHRKGKIQLIDARQFYN-KMRKSLGNKRNIIGDGEDNRFDHISLITRIHSDFIDNQELE 463 Query: 414 ------------PRTEGEWSFNAEETEV---------ADSEENKNTDQHLATSRWRKFSR 452 + F ++ V E D + ++ + + Sbjct: 464 FTCNGTTKTAIVSKIFDNKDFGYQKITVERPLRLNFQVSQERIARLDNNTTFAKLVESKK 523 Query: 453 EWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLA--AEAMGELVQAL---------SELD 501 + + + L+D+ +S+ + + + L QAL EL Sbjct: 524 KDPIEKQREMDAGKALQDRIKAALNSMDGSIIYMNREQYLKALRQALLQHHLSLGNPELK 583 Query: 502 ALMRELGASDEA 513 A++ L DE Sbjct: 584 AILEALSERDET 595 >UniRef50_A7IDE4 N-6 DNA methylase n=3 Tax=Proteobacteria RepID=A7IDE4_XANP2 Length = 710 Score = 258 bits (659), Expect = 3e-67, Method: Composition-based stats. Identities = 115/531 (21%), Positives = 197/531 (37%), Gaps = 72/531 (13%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQN--YVNELASLLFLKMCKETG------------QEA 47 L + + + +R + + L L+FLK + Sbjct: 15 TAQRLDSVIKSARNKMRKDRELKTDLTRLPTLTWLMFLKFVDDMERVHEDEAVLAGETYR 74 Query: 48 EYLPEGYRWDDLKSR----IGQEQLQFYR----------------KMLVHL-----GEDD 82 + YRW D S G + L F L L G Sbjct: 75 SLIDPPYRWRDWASDSAGITGPDLLSFINGEQTVRADGTKGPGLFTYLRSLRGNGEGRQR 134 Query: 83 KKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANET 142 + +V AVF ++ T + +++ ++ + + + G MYE LL++ + Sbjct: 135 RDVVSAVFRDLRNYATSGYVLRDVINLVNDIHF---DSTEDIQTLGRMYETLLREMRDAA 191 Query: 143 KSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGD 202 G+++TPRP+++ ++ ++ P+ E V DPA GT GFL A ++K + + + Sbjct: 192 GQN-GEFYTPRPVVRFMVQVIDPKLSETVLDPACGTGGFLAAAFDHMKPSADTV-----E 245 Query: 203 TQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEG-NLDHGGAIRLGNTLGSDGENLPKAH 261 ++ G E LA MN LLH +E +++ G A+R T + + + Sbjct: 246 KREILQRSTLRGGEDSSLPFLLAQMNLLLHGLEAPDIEFGNALRFKLTEIGERDRVE--- 302 Query: 262 IVATNPPFGSAAGTNITRTFVHPTSNKQ--LCFMQHIIETLHPG--GRAAVVVPDNVLFE 317 ++ TNPPFG I F + L F+Q I+ L G GRA VVVP+ +LF Sbjct: 303 VILTNPPFGGEEEAGILTNFPDDRRTAETALLFLQLIMRRLKRGGHGRAGVVVPNGILFG 362 Query: 318 GGKGTDIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVW 376 G I+ DL+++ +LHTI+RLP G F + TN++FF T D+W Sbjct: 363 DGIAARIKADLLEQFNLHTIVRLPEGTFAPYTDIPTNIIFFD---------TSGPTGDIW 413 Query: 377 VYD--LRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETE--VADS 432 ++ L + K P E L + G S +TE Sbjct: 414 YWEQPLPGGRRKYSKTQPLLYEELTDCLEWWSARKEGPQAWKVFGPSLIKRDTEGRTIAV 473 Query: 433 EENKNTD--QHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPE 481 + + + R + + + + L+ Sbjct: 474 DLDLKNPHAKEANHRRPVEIIESAVAKQRELLAVLDELRALVGAFDKITSN 524 >UniRef50_B4S214 Type I restriction-modification system methyltransferase subunit n=1 Tax=Alteromonas macleodii 'Deep ecotype' RepID=B4S214_ALTMD Length = 703 Score = 258 bits (658), Expect = 4e-67, Method: Composition-based stats. Identities = 116/508 (22%), Positives = 202/508 (39%), Gaps = 90/508 (17%) Query: 2 NNNDLVAKLWKLCDNLRDG-GVSYQ-NYVNELASLLFLKMCKETGQ--EAEYLPEG---- 53 L A + +R G++ + + L ++FLK + Q E E + EG Sbjct: 3 TAQQLGAIVKSSRQIMRKDKGLNGDLDRLPMLTWIMFLKFLDDLEQMRETEAVLEGKSFQ 62 Query: 54 ------YRWDDLKSR----IGQEQLQFYRK----------------MLVHLGEDD----K 83 YRW D + G E + F L L D+ + Sbjct: 63 PAIEAPYRWRDWAAIEGGITGDELIAFINNDEAMRPDGTRGIGLFAYLRSLQGDNGGDRR 122 Query: 84 KLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETK 143 ++ VF + + + +V ++ + + + +YE +L++ + Sbjct: 123 DVIATVFKGMQNRMINGYLLRDVVDKINGIHF---NSSEEMHTLSRLYETMLREMRDAAG 179 Query: 144 SGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDT 203 +G+++TPRP+++ ++ ++ PQ E V DPA GT GFL+EA +++ Q + + Sbjct: 180 -DSGEFYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTV-----ED 233 Query: 204 QDFQIHRAFIGLELVPGTRRLALMNCLLHDIE-GNLDHGGAIRLGNTLGSDGENLPKAHI 262 ++ + G E L MN LLH +E +D ++R D + + + Sbjct: 234 REVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPLREMGDKD---RVDV 290 Query: 263 VATNPPFGSAAGTNITRTFVHPTSNKQL--CFMQHIIETLH-------PGGRAAVVVPDN 313 + +NPPFG I F + F+Q I+ L GGRAAVVVP++ Sbjct: 291 ILSNPPFGGEEEKGILGNFPEDMQTAETVQLFLQLIMRKLKRKGNGSVTGGRAAVVVPES 350 Query: 314 VLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQG-VKTNVLFFTKGTVANPNQDKNCT 372 VL++GG +R+ L+ +LHTI+RLP G+F +++N+LFF + T Sbjct: 351 VLYDGGVAQRVRKQLLSDFNLHTIIRLPKGVFEPYSDIQSNILFFDRNGP---------T 401 Query: 373 DDVWVYDLRTNMPSFGKRTP-------FTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAE 425 VW Y + G + P +E + Y E +E Sbjct: 402 KGVWFYQHEVPVERRGMKNPCYTVTNALKEEEMAEIRTWY-------------ESPCESE 448 Query: 426 ETEVADSEENKNTDQHLATSRWRKFSRE 453 SE+ ++ D RK +E Sbjct: 449 YAWFVPSEDIRSKDFSFDFRNPRKEQQE 476 >UniRef50_C7P6B0 N-6 DNA methylase n=1 Tax=Methanocaldococcus fervens AG86 RepID=C7P6B0_METFA Length = 502 Score = 258 bits (658), Expect = 5e-67, Method: Composition-based stats. Identities = 120/538 (22%), Positives = 220/538 (40%), Gaps = 88/538 (16%) Query: 1 MNNND--LVAKLWKLCDNLR--DGGVSYQNYVNELASLLFLKMCKET------------G 44 M+ + + +++ CD LR DG +Y+ +L+ LLFLK+ + Sbjct: 1 MSKREALIRSEIKTACDILRTDDGTSGATDYIEQLSWLLFLKVFEGVEEELEEIAILNGE 60 Query: 45 QEAEYLPEGYRWDDL--------------------------KSRIGQEQLQFYRKMLVHL 78 + + + YRW + + + F +L Sbjct: 61 EYIPVIDKKYRWSNWAKRDWIGKPKECLKEFVDDVDEEFKKIDKPENAIIHFINNILFPY 120 Query: 79 GED-----DKKLVQAVFHNVS-TTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYE 132 + +++ V +F +S + P + ++ +D +D N + +YE Sbjct: 121 LRNLSGTPEREKVAQIFMEISGNKMKSPYNLMDVIEKIDKIDPRNY---EDTQVLSQIYE 177 Query: 133 GLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQ 192 +L +E G+++TPRP+I+ I+ ++KP+ E + DP G+AGFL+EA +Y+K + Sbjct: 178 EILLNMGSEAGWS-GEFYTPRPVIRFIVKIIKPKVGEKIFDPFGGSAGFLVEAYKYIKDK 236 Query: 193 TNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI-EGNLDHGGAIRLGNTLG 251 D + ++ F G E P L MN +LH I N ++ Sbjct: 237 LGD--KITVQEEEILQRETFYGHEKKPLPYLLGTMNMILHGILTPNYYRRNSLMEDVHNV 294 Query: 252 SDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 311 + K ++ TNPPFG + F +P + +Q+I+ L GGRAAV++P Sbjct: 295 PEH---EKYDVIMTNPPFGGKENKIVQNNFPYPVQATEALALQYIMRKLKDGGRAAVILP 351 Query: 312 DN-VLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFY--AQGVKTNVLFFTKGTVANPNQD 368 + ++F GGK +IRR+L++K ++ I+ LP G+F GVKTN++FF K Sbjct: 352 EGQIMFGGGKFKEIRRELLEKFNVFAIVSLPQGVFSQMGAGVKTNIVFFEKSGEP----- 406 Query: 369 KNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETE 428 T ++W Y+L F K+ D+ + + + E +E + Sbjct: 407 ---TKEIWYYELE---GKFTKKNKIKDKDFEDALKKF-------------EKREISENSW 447 Query: 429 VADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLA 486 + EE K D L K + + + +++ D + + + Sbjct: 448 IVSIEEIKKRDYDLTPKNPNK---KEEIEYREPEEILKEIEEVDLRIEGIIKKIKSML 502 >UniRef50_B0BR03 Type I restriction-modification system M subunit n=50 Tax=Bacteria RepID=B0BR03_ACTPJ Length = 489 Score = 257 bits (657), Expect = 6e-67, Method: Composition-based stats. Identities = 111/518 (21%), Positives = 207/518 (39%), Gaps = 64/518 (12%) Query: 6 LVAKLWKLCDNLRDG-GVS-YQNYVNELASLLFLKMCKETGQEAEYLPEGY--------R 55 L + +L D +R+ G++ + ++ +LFLK+ QE E + + Y R Sbjct: 3 LNNLVKRLQDVMRNDAGINGDAQRIEQIVWILFLKIYDAKEQEWEQIDDNYHSILPDFLR 62 Query: 56 WDDL-------KSRIGQEQLQFYRKMLVHLGED---------DKKLVQAVFHNVSTTITE 99 W + K+ G E L F L ++ ++K+++A F + + + Sbjct: 63 WQNWAKDNKDGKAMTGDELLNFVNNELFPALKNLPISAETPMNQKIIRAAFEDNNNYMKN 122 Query: 100 PKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTI 159 + +++ +D +++ + R FGD+YE +L+ + ++ AG+++TPR + + Sbjct: 123 GILLRQVINIIDEINF---EQYQERHAFGDIYENILK--SLQSAGNAGEFYTPRAVTDFM 177 Query: 160 IHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVP 219 ++KP+ E + D A GT GFL A + + Q + ++D + + G+E Sbjct: 178 AKMIKPRLGEKIADFACGTGGFLTSALKELDKQNDSIND------KNLLSNSVYGIEKKA 231 Query: 220 GTRRLALMNCLLHDIE-GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNIT 278 L + N LLHDI+ N+ H A+ D K ++ NPP+G + I Sbjct: 232 LPHLLCITNLLLHDIDNPNVHHDNALEKP---VKDYTENDKFDVILMNPPYGGSEIEQIK 288 Query: 279 RTFV--HPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGT-DIRRDLMDKCHLH 335 F +S FM I+ L GR A+V+PD LF I++ LM + +LH Sbjct: 289 TNFPSALRSSETADLFMSVIMYRLKKNGRVAIVLPDGFLFGTDNAKMAIKQKLMSEMNLH 348 Query: 336 TILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVY--DLRTNMPSFGKRTP 392 T++RLP +F + TN+LFF T + W Y D+ +F K P Sbjct: 349 TVIRLPHSVFAPYTSITTNILFFDNTEP---------TKETWFYRLDMPQGYKNFSKTKP 399 Query: 393 FTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSR 452 EH + ++ +E + ++ + Sbjct: 400 MKLEHFNEVMEWWYNRQAIEID--------GFDKARCYSYQEIADRQFNIDLCGFPHEEE 451 Query: 453 EWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAM 490 E + + + ++ L E + + Sbjct: 452 EILPPDELIANYQQKRTALNADIDRILGEITQILGIKL 489 >UniRef50_C8W115 Type I restriction-modification system, M subunit n=14 Tax=Bacteria RepID=C8W115_DESAS Length = 584 Score = 257 bits (656), Expect = 9e-67, Method: Composition-based stats. Identities = 91/502 (18%), Positives = 170/502 (33%), Gaps = 77/502 (15%) Query: 24 YQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLKSRIGQE---QLQFYRKMLVHLG- 79 Y ++++ + F K + + Y W ++ + LQ + + Sbjct: 122 YNKNLDQI--VTFEKQM--RRKVHFVIKPHYLWSNIYELARTQSKYLLQTLQAGFKFIEN 177 Query: 80 EDDKKLVQAVFHNVSTTITEPKQITA-----LVSNMDSLDWYNGAHGKSRDDFGDMYEGL 134 E + +F V+ + + L S + + D G+ YE L Sbjct: 178 ESFDSAFRGLFSEVNLDSDKLGRNYEARNTMLCSIITEIAEGLSEFTNETDLLGNAYEYL 237 Query: 135 LQKNANETKSGAGQYFTPRPLIKTIIHLL-----KPQPREVVQ-----DPAAGTAGFLIE 184 + + A+ + AG+++TP+ + + ++ P + D A G+A LI Sbjct: 238 IGQFASGSGKKAGEFYTPQQISNILSRIVILDSQDPSTGKKPYINNLLDFACGSASLLIN 297 Query: 185 ADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLH---DIEGNLDHG 241 ++++ + G E T LA MN LLH D E + HG Sbjct: 298 VKKHLEPNSIS---------------QIYGQEKNITTYNLARMNMLLHRFKDSEFQIFHG 342 Query: 242 GAIRLGNTLGSDGENLPK--AHIVATNPPFGSAAGTN--------ITRTFVHPTSNKQLC 291 ++ + ++ K V NPPF N + P S Sbjct: 343 DSLLNDWDILNEMNPAKKLKCDAVVANPPFSYRWEPNDTLAEDFRFKSYGLAPKSAADFA 402 Query: 292 FMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVK 351 F+ H L G A+++P VLF GG IR L++ ++ TI+ LP +F++ G+ Sbjct: 403 FLLHGFHFLSDEGTMAIILPHGVLFRGGAEEKIRTKLLEDGNIDTIIGLPANLFFSTGIP 462 Query: 352 TNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHG 411 +L K DDV + ++ EH+ Y Sbjct: 463 VCILVLKKCKKF---------DDVLFINASEYFDKGKRQNILLPEHIDKIVDTYQFRKEE 513 Query: 412 LSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDK 471 + +E + +L SR+ + E + +D++ +K K Sbjct: 514 DKK-----------YSRRVSMKEIEKNGFNLNISRYVSTAAEE------EIVDLADVKKK 556 Query: 472 DSIDADSLPEPDVLAAEAMGEL 493 D++ + + EL Sbjct: 557 LDETEDAIKRAKAKHNQFLKEL 578 Score = 56.3 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 60/151 (39%), Gaps = 22/151 (14%) Query: 3 NNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRW------ 56 L A LW + D LR G ++ ++ + + S LFL+ + +EA G + Sbjct: 6 QKQLGATLWAIADKLR-GAMNPDDFRDYMLSFLFLRYLSDNYEEAAKKELGSDYLQCENE 64 Query: 57 --DDLKSRIGQEQLQFYRKMLVH--LGEDDKKLVQAVFHNVSTTITEPKQITALV----S 108 + E + ++ + + ++ ++ V+ + + + E K++T L+ Sbjct: 65 IESIYNAGKQDETISLLKEQVTDYFIKQELEENVKNMMIDDHLVLFESKKLTPLIVWYNK 124 Query: 109 NMDSLDWYNGAHGKSRDD-------FGDMYE 132 N+D + + + + ++YE Sbjct: 125 NLDQIVTFEKQMRRKVHFVIKPHYLWSNIYE 155 >UniRef50_A7BWE8 Type I restriction enzyme StySPI M protein n=1 Tax=Beggiatoa sp. PS RepID=A7BWE8_9GAMM Length = 469 Score = 256 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 159/512 (31%), Positives = 250/512 (48%), Gaps = 58/512 (11%) Query: 5 DLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLKSRIG 64 + KL + +L+ G+ Y+ EL LLF KM G+ +P YRW+ L + G Sbjct: 6 NFAQKLIRPAKDLQKEGLPIHAYLTELTWLLFFKMAPILGK-IHLMPSDYRWELLIQKSG 64 Query: 65 QEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSR 124 EQ +Y++++ L + + ++ + T P+Q+ +++ + +++ Sbjct: 65 IEQYNYYQEVIKILSQASDPYIAGLYAHADTFFKTPEQLAQVITTLSTIN-------IPI 117 Query: 125 DDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIE 184 +D G++YE LL++ A Q PR L+ ++ L +PQP E++QDP AGTA F++ Sbjct: 118 EDLGEVYEILLERCAYLDGGRLHQV--PRSLVDLMVILTQPQPGELIQDPLAGTASFVVA 175 Query: 185 ADRYVK----------SQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI 234 + Y++ SQ + + + F+ +E RLALMNCLLH I Sbjct: 176 TNEYMQVINDEFSESSSQGPPKNQTQNQNKFCTLETNFLAVEPDLIRHRLALMNCLLHRI 235 Query: 235 EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQ 294 N +R G++L S+ E P+A ++ + F S + + + L +Q Sbjct: 236 --NHSQHLPVRWGDSLLSNLEKWPQADVILSILVFASDLSEELGKH------DASLALLQ 287 Query: 295 HIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNV 354 HI +TL PGGRAAV++PD +L G +R L+D C LHT+LRLP GIFY V ++ Sbjct: 288 HIYQTLKPGGRAAVILPDKLLNAVGPAQQVRGTLLDTCVLHTVLRLPHGIFYPYKVPAHL 347 Query: 355 LFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSP 414 LFF +G A+ T++VW YDLR P FG+ EHL FE++YG+DP+G S Sbjct: 348 LFFWRGHTADEK-----TENVWFYDLRAKCPIFGQYLRLKREHLMSFEKIYGDDPYGKSK 402 Query: 415 RTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSI 474 R E EEN RW FSR + +SD LD+ WL + + I Sbjct: 403 RRE------------EQDEEN----------RWHHFSRTHL-AQRSDRLDLCWLTEANII 439 Query: 475 DADSLPEPDVLAAEAMGELVQALSELDALMRE 506 + D+ E + + V L +L L+ E Sbjct: 440 TDNQNTTGDIW--EVLEKTVDDLEDLTKLLCE 469 >UniRef50_P75436 Putative type I restriction enzyme MpnORFDP M protein n=2 Tax=Bacteria RepID=T1MD_MYCPN Length = 543 Score = 255 bits (650), Expect = 4e-66, Method: Composition-based stats. Identities = 85/569 (14%), Positives = 195/569 (34%), Gaps = 115/569 (20%) Query: 7 VAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPE-----GYRWDDL-- 59 K+W++ D LR G + ++ + + LF + E + E + +++L Sbjct: 13 EKKIWEIADKLR-GTIDGWDFKSYVLIGLFYRFLSENLCKYFNDSERRNNPDFSYENLTD 71 Query: 60 ----------------------------------KSRIGQEQLQFYRKMLVHLGEDD--- 82 +++ ++ R + + + Sbjct: 72 DYEAIDALKDAAIASKGFFIKPSQLFQNVVKSIRENKNNEDLNTTLRDIFDDIEKSTELG 131 Query: 83 ----KKLVQAVFHNVS--------TTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDM 130 K+ + +F + + T +++ L++++D+++ S D FGD Sbjct: 132 DGRSKESFKGLFKDFNVSEVKLGSTLTIRTEKLKELLTSIDTMELDEFEKN-SIDAFGDA 190 Query: 131 YEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPR--EVVQDPAAGTAGFLIEADRY 188 YE L+ A G++FTP+ + + + + + + V D A G+ L++ + Sbjct: 191 YEFLISMYAQNAGKSGGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKV 250 Query: 189 VKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE---GNLDHGGAIR 245 + + ++ G E+ T L MN +LH+I+ N+ + + Sbjct: 251 LGK-------------EKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLT 297 Query: 246 LGNTLGS--DGENLPKAHIVATNPPFGSAAGTNITRTF-----------VHPTSNKQLCF 292 + N +V +NPP+ + + + P S L F Sbjct: 298 TKEWEKHYVNCSNENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAF 357 Query: 293 MQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKT 352 + H + L G AA+V +L+ GK IR+ L+D+ + +++LP+ +F + T Sbjct: 358 VLHALYVLGQEGTAAIVCFPGILYREGKEQTIRKYLVDQNFVDAVIQLPSNLFSTTSIAT 417 Query: 353 NVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGL 412 ++L K D ++ D K + ++++ + Sbjct: 418 SILVLKKNRDKK--------DPIFFIDGSNEFVREKKNNRLSPKNIEKIVDCFNSKKE-- 467 Query: 413 SPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKD 472 A + + ++ + ++ L ++ E + LDI L Sbjct: 468 ----------EANFAKSVERDKIRESNYDLTVGKYVNSEAE------KEELDIKVLNHSI 511 Query: 473 SIDADSLPEPDVLAAEAMGELVQALSELD 501 D + + + ++ +D Sbjct: 512 DEIVDKQKDLRTKIKDIIQDIKVDFDNID 540 >UniRef50_D2QLF2 Site-specific DNA-methyltransferase (Adenine-specific) n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QLF2_9SPHI Length = 502 Score = 254 bits (648), Expect = 7e-66, Method: Composition-based stats. Identities = 110/498 (22%), Positives = 207/498 (41%), Gaps = 64/498 (12%) Query: 5 DLVAKLWKLCDNLR--DGGVSYQNYVNELASLLFLKMCKETGQEAEY--------LPEGY 54 +L + + D +R G + +L +LFLK+ + E E +P Sbjct: 4 NLSGIIKSIRDIMREDRGVNGDAQRIEQLGWMLFLKIFDDKDIEMELLADDYQSPIPTDC 63 Query: 55 RWDDLKSR----IGQEQLQFYRKMLVHLGEDDK--------KLVQAVFHNVSTTITEPKQ 102 +W + + G E QF L ++ L++ VF + + Sbjct: 64 QWRNWAADNEGITGDELQQFVDLTLFPTLKNLPVKDGNRRALLIREVFEGNNNYMKSGIN 123 Query: 103 ITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHL 162 I + + ++ +D+ + R FGD+YEG+L++ ++ +G+++TPR + + + + Sbjct: 124 IRKICNKLNEIDF---NSSEDRHLFGDLYEGILKEL--QSAGDSGEFYTPRAVTQFMTEM 178 Query: 163 LKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTR 222 + P+ E++ DPA GT GFL+ A +++ + +++ + + G E P Sbjct: 179 VNPRLGEIIFDPACGTGGFLVNAIEHIRQR-----EVNSVDDRLTLQKTIRGCEYKPLPY 233 Query: 223 RLALMNCLLHDIE-GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTF 281 LAL N +LHDIE N+++G ++ + D + + ++ NPPFG F Sbjct: 234 ELALTNLILHDIEVPNIEYGDSLGREYSSIRDRD---RVDVILANPPFGGTVANGNEGNF 290 Query: 282 VH--PTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILR 339 T F+ I+ L GRAA+V+PD L G +R+ L++ C LHTI+R Sbjct: 291 PANFRTRESADLFLVLIVNLLRTNGRAALVLPDGSLTGEGVKQRVRQKLLEDCDLHTIVR 350 Query: 340 LPTGIFYA-QGVKTNVLFFTKGTV----------------ANPNQDKNCTDDVWVYDLR- 381 LP +F V TN+LFF K + D+ T ++W Y+ R Sbjct: 351 LPNSVFQPYATVATNLLFFEKKRTTGLAAPDSDLPLFSNGETNDSDRYATREIWYYEHRL 410 Query: 382 -TNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQ 440 S+ K + +P + + + R E + ++ + D + + + Sbjct: 411 PEGQKSYSKTKTIQLKEFEPLKAWW-------TNRVESDQAWRVPIQTIIDRKFDLDIKN 463 Query: 441 HLATSRWRKFSREWIRTA 458 +F+ + Sbjct: 464 PNRKEEVMEFNSTELIDR 481 >UniRef50_A8ZRN8 N-6 DNA methylase n=14 Tax=cellular organisms RepID=A8ZRN8_DEIGD Length = 610 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 92/543 (16%), Positives = 182/543 (33%), Gaps = 92/543 (16%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNE-----------------LASL--------LF 36 + LW ++R + + + L Sbjct: 94 TTKPMEQMLWDAACSIRGEK-EAAKFKDYLLPLLFLKRLSDVFDDEIERLAEEYGDRATA 152 Query: 37 LKMC-KETGQEAEYLPEGYRWDDL--------------KSRIGQEQLQFYRKMLVHLGED 81 L++ + YLP RW + +S ++ + + + + + Sbjct: 153 LEIAESDHSLLRFYLPPEARWTVISGREPFDWPRDVQGRSTAPRDIGEHLTRAVRAVVKH 212 Query: 82 DKKLVQAVF------HNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLL 135 + L + P ++ +V + G D G YE LL Sbjct: 213 NPSLSGVIDVVDFAAERNGERDINPAKLRGVVETFSDPRYRLGLADVQPDFLGRAYEYLL 272 Query: 136 QKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTND 195 +K A + AG++FTP + + H+L+P+P E D A G+AG LI+ + Sbjct: 273 RKFAEGSGQSAGEFFTPTEVGFLMAHILRPKPGETCHDYACGSAGLLIKLQLVARELDPT 332 Query: 196 LDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGE 255 ++ G EL + +A MN ++HD+E L G + +DG Sbjct: 333 S----------RVPLKLSGQELQAESYAVAQMNAIIHDMEVELARGDTMINPKFRNADG- 381 Query: 256 NLPKAHIVATNPPFGSAAGTNITRTFVH---------PTSNKQLCFMQHIIETLHPGGRA 306 ++ + IV NP + + +I + ++QH + ++ GRA Sbjct: 382 SIRQHDIVVANPMWNQSFAPDIFAHDPFDRFRTAGGITSGKGDWAWLQHTLACMNDHGRA 441 Query: 307 AVVVPDNVLFEGG------KGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 360 AVV+ + G K IR+ +++ + ++ LP +FY ++ K Sbjct: 442 AVVLDTGAVTRGSGSKNEDKERTIRKWFVEQDLIDGVILLPENLFYNTTAAGVIVVLNKR 501 Query: 361 TVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEW 420 A + + + + + +E L+P +Y + Sbjct: 502 KPAARK------GKIVLLNASRHFSKGRPKNYLPEEDLRPLAAMYLKGEP---------- 545 Query: 421 SFNAEETEVADSEENKNTDQHLATSRWR-KFSREWIRTAKSDSLDISWLKDKDSIDADSL 479 E V ++ + D +L+ RW + R+ K+ D+ L +K +L Sbjct: 546 --VDGELAVITKQQAEEADYNLSPGRWIAQGGNADHRSIKAIVADMLSLDEKAREIDQTL 603 Query: 480 PEP 482 + Sbjct: 604 AKL 606 >UniRef50_B3ENS7 N-6 DNA methylase n=2 Tax=cellular organisms RepID=B3ENS7_CHLPB Length = 686 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 100/590 (16%), Positives = 195/590 (33%), Gaps = 94/590 (15%) Query: 4 NDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK---ETGQ--------------- 45 N++V+ LW + D L +G + + L+ E + Sbjct: 8 NNVVSFLWAIADLL-NGAFKKSEFQKIILPFTVLRRLDYALEKTKAKVLETEHTLKAKGL 66 Query: 46 ------------EAEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAV-FHN 92 A Y + ++ L R+ ++ + +++ A F + Sbjct: 67 ENRHGQLCRAAGYAFYNTSKFNYESLLH-DDTNLALNLRQYVMGFSPNVREIFAAFNFDD 125 Query: 93 VSTTITEPKQITALVSNMDSLDWYN-GAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFT 151 + + L+ + + S + G ++E LL+K G++FT Sbjct: 126 TIRDLGRVNLLYLLMERFNEKSKVDLRPASMSNHEMGYVFEHLLRKFNEALNENPGEHFT 185 Query: 152 PRPLIKTIIHLLKPQPRE---------VVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGD 202 PR I+ ++ L+ E V D GT G L +V Sbjct: 186 PRDAIRLMVDLVLMLDSELAGTEGIPRTVYDCGCGTGGILSITKEHVLQINPQA------ 239 Query: 203 TQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHI 262 G EL P T +A + L+ +E I+ G+TL D + + + Sbjct: 240 ------KVFLYGQELNPFTWAIARADMLI--LEPEGKDAENIKCGSTLSDDQLSDMRFDL 291 Query: 263 VATNPPFGSAAGTN--------------ITRTFVHPTSNKQLCFMQHIIETLHP----GG 304 NPP+G + S+ Q+ F+QH+I ++ Sbjct: 292 QFVNPPYGYEWSKDYDAVTAEAARGFDGRFGAGTPRKSDGQMLFLQHLIARMNDPEESQS 351 Query: 305 RAAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGT 361 +++ + LF GG ++IRR +M+ L I+ +P +FY G+ T + + Sbjct: 352 YIGIILNGSPLFTGGAASGESEIRRWIMENDWLEAIVAMPQQLFYNTGIGTYIWLLSNRK 411 Query: 362 VANPNQDKNCTDDVWVYDLRTNMP-------SFGKRTPFTDEHLQPFERVYGEDPHGLSP 414 A V + D KR T++H Q + G Sbjct: 412 PAKHK------GKVMLVDASGEEFWSGMSKSLGSKRREITEDHKQAILNLVKVRKEGPHV 465 Query: 415 RTEGEWSFNAEETEVADSEENKNTDQHLATSR---WRKFSREWIRTAKSDSLDISWLKDK 471 + F E +V + + T + +R F + K+ + ++ Sbjct: 466 KLFDTTDFGYREIKVLRPLKLRFTVNAESLARLDAQAAFRNLAVSKKKAAAEQKREEQEG 525 Query: 472 DSIDADSLPEPDVLAAEAMGELVQALSELDALMRELGASDEADLQRQLLE 521 ++ A+ LA + + + LDA +++ G +A + + +L Sbjct: 526 LALQAEIRNTLQTLAGKTYTCRDKFTTALDAALKKAGLKLKAPVLKAILA 575 >UniRef50_B2IAD6 N-6 DNA methylase n=19 Tax=cellular organisms RepID=B2IAD6_XYLF2 Length = 793 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 85/522 (16%), Positives = 156/522 (29%), Gaps = 93/522 (17%) Query: 6 LVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK-----------ETGQ--------- 45 + +W + DN Y + + L+ E + Sbjct: 14 ISDFIWNIADNRLRDVYVRGKYRDVILPFTVLRRLDAVLEATKDAVLERKKFLDAHNVVE 73 Query: 46 ----------EAEYLPEGYRWDDLKS-RIGQEQLQFYRKMLVHLGEDDKKLVQAV-FHNV 93 +A Y + LK+ GQ + L D ++++ F N Sbjct: 74 QDGALRMAAGQAFYNVSEFTLAKLKASAAGQRLRDDFIAYLDGFSRDVQEILTKFNFRNQ 133 Query: 94 STTITEPKQITALVSNM------------DSLDWYNGAHGKSRDDFGDMYEGLLQKNANE 141 + + + L+ + D G ++E L+++ + Sbjct: 134 IQKLVDSHVLGYLIEDFLDPEVNLAPLPVKDADGRIKLPALDNHGMGTVFEELIRRFNED 193 Query: 142 TKSGAGQYFTPRPLIKTIIHLLKPQPREVV-------QDPAAGTAGFLIEADRYVKSQTN 194 AG++FTPR +++ + LL E + D + GT G L A+ + + Sbjct: 194 NNEEAGEHFTPRDVVQLMAKLLFLPVAERIESSTYSLYDGSCGTGGMLTVAEEALHALA- 252 Query: 195 DLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDG 254 + ++ G E+ T + + LL ++ +TL +D Sbjct: 253 -------EQHGKEVSIHLFGQEISDETYAICKADLLLKGEGAEAENIVGGADKSTLSADQ 305 Query: 255 ENLPKAHIVATNPPFGSAAGTNITRTFVHP----------------------TSNKQLCF 292 + +NPP+G + T++ R +S+ QL F Sbjct: 306 FPSRAFDFMISNPPYGKSWKTDLDRMGGKKGFSDRRFIVSHGGDPEFKLLTRSSDGQLMF 365 Query: 293 ----MQHIIETLHPGGRAAVVVPDNVLFEGGKGT---DIRRDLMDKCHLHTILRLPTGIF 345 +Q + G R A+V + LF G G +IRR +++ L I+ LP IF Sbjct: 366 QVNKLQKMKHNTPLGSRIALVHNGSALFTGDAGQGESNIRRWVLENDWLEAIIALPLNIF 425 Query: 346 YAQGVKTNVLFFTKGTVANPNQDKNCTDDV-WVYDLRTNMPSFGKRTPFTDEHLQPFERV 404 Y G+ T + D W LR N+ K + + Sbjct: 426 YNTGIATYIWVLANKKAQARRGKVQLIDASQWFQPLRRNLGK--KNCELGAADIARILDL 483 Query: 405 YGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSR 446 Y + E L+ R Sbjct: 484 YLG--QTQEAAQSKWFDTQDFGYWKVTIERPLRLKSQLSDER 523 >UniRef50_Q3M7D1 N-6 DNA methylase n=5 Tax=Bacteria RepID=Q3M7D1_ANAVT Length = 694 Score = 251 bits (640), Expect = 7e-65, Method: Composition-based stats. Identities = 85/454 (18%), Positives = 162/454 (35%), Gaps = 82/454 (18%) Query: 4 NDLVAKLWKLCDNLR-DGGVSYQNYVNELASLLFLKMCKETGQEA--------------- 47 L A LW+ D LR + + Y + L+FLK ++ Sbjct: 7 KQLEANLWQSADTLRANSDLKSSEYSTPVMGLIFLKFADNKYRQYAAEIQQEYEALKGTR 66 Query: 48 --------------EYLPEGYRWDDLKSRIGQEQL-QFYRKMLVHLGEDDKKLVQAVFHN 92 YLP+ R++ L + +E + + + +V + +L + + Sbjct: 67 REKAIAEIAIEKCGFYLPDHARYNYLLNLPEEEDIAKAIKAAMVSIESYKPELKDTLPQD 126 Query: 93 VSTTIT--EPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYF 150 +T + L+ N ++ + D FG +YE L A G G++F Sbjct: 127 EYFRLTRTDKGIPKQLLKNFSNI-----PENATGDMFGQIYEYFLGNFALSEGQGGGEFF 181 Query: 151 TPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHR 210 TPR +++ ++ +++P V DPA G+ G +++ ++++ Q L+ D Sbjct: 182 TPRSVVRLMVEIIEPHQG-TVFDPACGSGGMFVQSAQFIEEQRKKLNQSAADDLF----- 235 Query: 211 AFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFG 270 G E T +LA MN ++ + G++ + K V NPPF Sbjct: 236 -VYGQEKTLETVKLAKMNIAVNGLRGDVRQTNT-----YYEDPFGSFGKFDYVLANPPFN 289 Query: 271 ----------------------SAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAV 308 + N ++ +L P GRAA+ Sbjct: 290 VDDVNLSRVEIDARFNTYGIPRNKTKGKKQEQGNETVPNANYLWINLFATSLKPKGRAAL 349 Query: 309 VVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQD 368 V+ ++ DIR+ L+++ ++ +L LP+ +FY + + FF +G Sbjct: 350 VMANSASDARHSEADIRQKLIEENLIYGMLTLPSNMFYTVTLPATLWFFDRGKT------ 403 Query: 369 KNCTDDVWVYDLRTNMPSFGK-RTPFTDEHLQPF 401 D + D R + F+ E + Sbjct: 404 ---DDKILFIDARNIFTQVDRSHREFSTEQISNI 434 >UniRef50_D1VS23 Type I restriction-modification system methyltransferase subunit n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VS23_9FIRM Length = 983 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 111/521 (21%), Positives = 202/521 (38%), Gaps = 47/521 (9%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQ-NYVNELASLLFLKMCKETGQEAEY------LPEGY 54 + +L+ + + LR G+ E A++LFLK+ E+ Q Sbjct: 151 DRRELIRIFDEANNMLRGEGLRAGIERFGEFANILFLKLISESEQIKRESGINTNFENAC 210 Query: 55 RWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLD 114 WD +K+ ++++ K + D + +F + I + + ++ +D L Sbjct: 211 SWDSIKNIPISTRIEYINKTVYEKLNDLYET--DIFTPLQ--IRDTSILKEIMDKLDPLT 266 Query: 115 WYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDP 174 + D GD +E L K + TK+ G+YFTPR ++KT++ L+ PQ E + DP Sbjct: 267 LTD----VDSDVKGDAFEYFL-KASTSTKNDLGEYFTPRHIVKTMVRLVNPQIGETIYDP 321 Query: 175 AAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD- 233 GT GFLIE+ R++ + D + G E+ T R+ MN +L Sbjct: 322 FCGTGGFLIESFRHIYNNMARTD----ANLKMLREKTVYGNEI-TNTARITKMNMILAGD 376 Query: 234 IEGNLDHGGAIRLG----NTLGSDGENL--PKAHIVATNPPFGSAAGTNITRTFVHPTSN 287 N+ ++ +T + IV N P+ + P++N Sbjct: 377 GHSNIKMKDSLANPIDGKSTYIDEKGEEHHNGYDIVLANMPYSQKTKYGNL--YDLPSNN 434 Query: 288 KQLCFMQHIIETL---HPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGI 344 +QH I+ + GR A+VVP+ LF R L++ C L +++ LP G+ Sbjct: 435 GDSICVQHCIKAVDSASENGRIALVVPEGFLFRKDLTKT-REYLLENCQLQSVISLPQGV 493 Query: 345 FYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPF--TDEHLQPF 401 F GVKT++++ TK V D W +D++++ S T L + Sbjct: 494 FLPYTGVKTDIIYATK--VNRKISSSEKRKDFWYFDVKSDGYSLDNHRRKLDTPSDLSKY 551 Query: 402 ERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSD 461 E D + + + EV ++ L SR+R + + ++ + Sbjct: 552 EEYRKLDDDQVEDMLKVGF-------EVIPLDKVYKNSNILVGSRYRTHTVKKSKSHEMV 604 Query: 462 SL-DISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELD 501 L +I+ S + + + +D Sbjct: 605 KLGNIATFIRGISFPKKAQKDQADDLLNVITTRAAQADGID 645 >UniRef50_C3XHF2 Type I restriction-modification system M subunit n=2 Tax=Campylobacterales RepID=C3XHF2_9HELI Length = 496 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 115/504 (22%), Positives = 205/504 (40%), Gaps = 57/504 (11%) Query: 10 LWKLCDNLRD--GGVSYQNYVNELASLLFLKMCKETGQEA------------EYLPEGYR 55 + KL + +R G + ++ +LFLK+ +E +PE R Sbjct: 4 IKKLQNIMRQDAGVNGDAQRMEQITWILFLKLYDYYEKEWTALNEMNGTEYHSIIPEHLR 63 Query: 56 WDDL----KSRIGQEQLQFYRKMLVHLGED---------DKKLVQAVFHNVSTTITEPKQ 102 W+ KS G+ L F L + ++ +V+ VF +++ + + Sbjct: 64 WESWAVGEKSPTGEPLLTFINNELFPTLKALNITESTPLNQSIVRKVFEDLNNYMKDGYL 123 Query: 103 ITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHL 162 + +++ ++S + + + +YE L+ ++ AG+++TPR + + ++ + Sbjct: 124 LREVINEIES--SLKIHNRQDFKELCKVYESFLK--TLQSAGNAGEFYTPRAVTEFMVEM 179 Query: 163 LKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTR 222 L P+ E V D A GT GFLI A +++ Q N ++ +F G+E Sbjct: 180 LSPKLGESVADLACGTGGFLISAAHFLEKQVN------LTSERKVFETSFYGVEKKSLPF 233 Query: 223 RLALMNCLLHDIE-GNLDHGGAIRLGNTLGSDGE--NLPKAHIVATNPPFGSAAGTNITR 279 L N L++ IE NL HG A N D PK I+ NPP+G + + Sbjct: 234 LLCATNLLINGIENPNLKHGNAFDFSNFEDFDINLTKYPKFDIILMNPPYGGNERGDDIK 293 Query: 280 TFVHPTSNKQL--CFMQHIIETLHPGGRAAVVVPDNVLFEGGKGT-DIRRDLMDKCHLHT 336 F + + FM I+ L G+AAVV+PD LF +++R L+ +L+ Sbjct: 294 NFPQEYKSSETVDLFMALILHRLSYKGKAAVVLPDGFLFGADNAKINLKRKLLSDFNLYL 353 Query: 337 ILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTD 395 ILRLP +F + TN+LFF + D+ + SFGK + Sbjct: 354 ILRLPKSVFAPYTSIPTNLLFFNADPQGTQHTHFYR------LDMPEGIKSFGKTKQMSL 407 Query: 396 EHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWI 455 EH +PF + + L + + + + E+ N + +++ E I Sbjct: 408 EHFEPFLQWWESGKQTLQDESGNFKAKSYTKEELEARNYNFDLCGYVS-------EEEEI 460 Query: 456 RTAKSDSLDISWLKDKDSIDADSL 479 I +DK + DS+ Sbjct: 461 LAPLELMEQIKTERDKLNATLDSI 484 >UniRef50_C9MRT4 Type I restriction-modification system, M subunit n=3 Tax=Prevotella RepID=C9MRT4_9BACT Length = 508 Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats. Identities = 128/516 (24%), Positives = 210/516 (40%), Gaps = 59/516 (11%) Query: 8 AKLWKLCDNLRDG-GVS-YQNYVNELASLLFLKMCKETGQEAEY------------LPEG 53 + +L + +R G++ + ++ + FLK+ + EY +PE Sbjct: 5 NIVKRLQNIMRQDAGINGDAQRIEQMTWMFFLKVYDTQEETWEYKASKERTTFESIIPEK 64 Query: 54 YRWDDL-------KSRIGQEQLQFYRKMLVHLGE---------DDKKLVQAVFHNVSTTI 97 RW + + G L F L + K +V+ VF +++ + Sbjct: 65 LRWRNWAIDEKDGDAMTGDALLSFINDKLFPTLKGLEVTRETPRSKAIVKEVFEDLNQYM 124 Query: 98 TEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIK 157 + +V+ ++ +++ R FGD+YEG+L+ ++ AG+++TPR L Sbjct: 125 KNGILLRQVVNVINEIEF---DDATDRHMFGDIYEGILKDL--QSAGNAGEFYTPRALTD 179 Query: 158 TIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLEL 217 II L P E V D +GT GFL A Y++ Q DD +A IG E Sbjct: 180 FIIQQLSPVLGETVGDFTSGTGGFLTSALNYLQKQVKTTDD------RRLFQKAVIGHEW 233 Query: 218 VPGTRRLALMNCLLHDIE-GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTN 276 P L++ N LLHD+E N+ H ++ T SD + K +++A NPP+G + Sbjct: 234 KPLPYLLSITNLLLHDVESPNIRHCDSL---GTKMSDFKEGDKVNVIAMNPPYGGSTDAA 290 Query: 277 ITRTFV--HPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLF-EGGKGTDIRRDLMDKCH 333 F +S FM I+ L GRAAV+VPD LF G I++ ++ + Sbjct: 291 SKSNFPMEFRSSETADLFMVLIMYRLKANGRAAVIVPDGFLFGTDGAKLAIKQKMLRDFN 350 Query: 334 LHTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVY--DLRTNMPSFGKR 390 LHTI+RLP IF + TN+LFF ++ T+ W Y D+ F K Sbjct: 351 LHTIIRLPGSIFAPYTSIATNILFFNNERAEGADEGF-STNKTWFYRLDMPEGYKHFSKT 409 Query: 391 TPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKF 450 EH QP + + S E+ ++E D + ++ K Sbjct: 410 KSMRLEHCQPICDWWNDRKEIASDEL-------GEKARCFTAKELAELDFNFDQCKFPKD 462 Query: 451 SREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLA 486 E + A+ + K D +L E + Sbjct: 463 EEEILPPAELLANYFMKRKALDDEIDKTLAEIQKIL 498 >UniRef50_A3J6X4 Type I restriction-modification n=1 Tax=Flavobacteria bacterium BAL38 RepID=A3J6X4_9FLAO Length = 578 Score = 248 bits (633), Expect = 4e-64, Method: Composition-based stats. Identities = 93/549 (16%), Positives = 182/549 (33%), Gaps = 81/549 (14%) Query: 1 MNNND---LVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK---------------- 41 MNNN+ V +W++ D++ + + + ++ Sbjct: 1 MNNNNTKVEVGFIWQITDDVLRDAFKKNEIGDVVLPFVVIRRLDCILDGVNENVRDTYNN 60 Query: 42 --ETGQEA--------------EYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKL 85 + E Y + LK ++ F L ++ + + Sbjct: 61 FKDKVAEDKLDPILRKAAGGLKFYNTSRHTLHSLKDDARNIEINF-NNYLNGFNQEVRDI 119 Query: 86 VQAV-FHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKS 144 ++ F + + + K + ++ + +D + G ++E L++ + ++ Sbjct: 120 LENFQFDKIVARLIKNKLLYEMIDAICKIDMH--TEKIDNHGMGYVFEELIRISNEQSNE 177 Query: 145 GAGQYFTPRPLIKTII---------HLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTND 195 AG++FTPR +I + L +P + DPA GT G + Y+ Sbjct: 178 TAGEHFTPRDVIALMNTILFVNEKQELAQPGIIRTIFDPACGTGGMVNLGKNYIL----- 232 Query: 196 LDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGE 255 D + G EL + +A L+ E N I+ GN+ D Sbjct: 233 --DTLLKDSKNKPTIQTYGQELNEQSYAIAKSEALITGEEAN-----NIKHGNSFSEDQF 285 Query: 256 NLPKAHIVATNPPFGSAAGTN-------------ITRTFVHPTSNKQLCFMQHIIETL-H 301 H + NPP+G + + TS+ QL F+QH++ + Sbjct: 286 QGKHFHYMMANPPYGVTWKKDQKFIENESLNPAGRFYAGLPRTSDGQLLFLQHMLSKIER 345 Query: 302 PGGRAAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFT 358 G R VV + LF G +DIR+ +++ L I+ LP +FY G+ T + F T Sbjct: 346 EGSRIGVVTNGSPLFTGDAGSGESDIRKWIIENDWLECIVALPKDMFYNTGINTYIWFLT 405 Query: 359 KGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEG 418 + V KR T EH+ ++Y + + Sbjct: 406 NKKEKQRKGKVQLINAVDYCR-SNKKSLGNKRNEITAEHITDILKLYTDFKPTQHSKIFD 464 Query: 419 EWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADS 478 F + V ++ + L ++ K + +++ ++ +K Sbjct: 465 NEHFGYFQLTVEQPVYDEKGKKVLDKNKNPK---ADSKKRDKENVPLTADIEKYFETQVL 521 Query: 479 LPEPDVLAA 487 PD Sbjct: 522 PHVPDAWID 530 >UniRef50_C9L2F5 Type I restriction-modification system, M subunit n=1 Tax=Bacteroides finegoldii DSM 17565 RepID=C9L2F5_9BACE Length = 494 Score = 247 bits (631), Expect = 6e-64, Method: Composition-based stats. Identities = 100/501 (19%), Positives = 170/501 (33%), Gaps = 69/501 (13%) Query: 14 CDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAE-------------YLPEGYRWDDLK 60 + G +S Y + + +LLFLK E + + + E +D L Sbjct: 16 AKQILGGTLSVNQYKDYVLALLFLKSASEYYKSNDSFQSDENKPFLRLLVSERSSFDYLY 75 Query: 61 SRIGQ-EQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEP---------KQITALVSNM 110 +G E + L L + + ++++ N + ++ L+ Sbjct: 76 KELGSLELGKLINVALYELEQANSRVIEGYEINRAINFESNILGDTDERLSKLRELLHFF 135 Query: 111 DSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQP-RE 169 L + A D G +Y LL A E TP+ +I + L+ Sbjct: 136 QKLTLTDDAGKLI--DIGALYNLLLYIFAEEAGKKINNVLTPKEVIGLVAELIGDNKDNN 193 Query: 170 VVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNC 229 + DP +G+ L+E + V G E L MN Sbjct: 194 SLCDPVSGSGTLLVEVGKRVG----------------IRGANIFGQEANWNQYALTKMNL 237 Query: 230 LLHDIEGN-LDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTN--------ITRT 280 +L+ + + G ++ +D L + IVA+ PPF T + Sbjct: 238 MLNGFKDSTFFWGDSLSNPK--LTDDGGLKRFDIVASIPPFADKWATEEAEFDRYGRFQY 295 Query: 281 FVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRL 340 + P S ++ HI+ +L P GRA VVVP VLF + IR +++ L ++ L Sbjct: 296 GIPPRSQATWAYISHILASLKPNGRAVVVVPAGVLFRTS-ESKIRHQIIEHNLLEAVIEL 354 Query: 341 PTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQP 400 P +FY + T +L F K T D R S +D ++ Sbjct: 355 PQNLFYGAAISTAILVFRKDRK---------TTQTLFMDARKGYISNKGIYKLSDTMVEQ 405 Query: 401 FERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKS 460 Y G E W N+ +A EE +N T ++ + E + Sbjct: 406 LLNTYKGFLSG-----EQVWQENSCPAYIATQEEVRNNKYDWQTVKYVEEKIERVEVDVE 460 Query: 461 DSLD-ISWLKDKDSIDADSLP 480 +L I L+ + + L Sbjct: 461 ATLQRIEKLEKRLEFVNEQLE 481 >UniRef50_Q6IVN0 Predicted HsdM n=1 Tax=uncultured gamma proteobacterium eBACHOT4E07 RepID=Q6IVN0_9GAMM Length = 475 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 110/509 (21%), Positives = 210/509 (41%), Gaps = 68/509 (13%) Query: 8 AKLWKLCDNLR--DGGVSYQNYVNELASLLFLKMCKETGQE------------AEYLPEG 53 +K + + L DG + +Y+++ + +LFLK ++ ++ + E Sbjct: 5 SKFSTIRNLLWKDDGCNTEVDYLSQFSWILFLKYLEDFEEDLKNRAILDGKQHTPIMDER 64 Query: 54 YRWDDL------KSRIGQEQLQFYRKMLVHLGEDDKKL----------VQAVFHNVSTTI 97 Y W S I + + F + L + K + V +F + + Sbjct: 65 YMWSSWGRNEGKNSLIDDDLISFVSEDLFPYLRNFKTISKDTKSIQYKVGQIFDQIKFLV 124 Query: 98 TEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIK 157 + ++ +D ++++ + D+ D+YE +++ + + AGQY+TPRPLI Sbjct: 125 ESGNILRDVLDEIDGIEFFKSSES---DELSDLYEESIKQMG-NSGTSAGQYYTPRPLIN 180 Query: 158 TIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLEL 217 +I+ + P E V DPA G+ GFLI ++ ++ +L + +G E Sbjct: 181 SIVKAVNPTLGETVLDPACGSGGFLISTFEHILNK----KELTAKEFNILQKDTVLGQEK 236 Query: 218 VPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNI 277 + + +MN ++H IE NTL D ++ + ++ NPPFG + I Sbjct: 237 IGIPFAIGIMNMIMHGIETPNIIRDNTLSTNTL--DLQDKDRVDVIVANPPFGGSEREEI 294 Query: 278 TRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTI 337 F +S FMQ+ ++ L GGRA +++ + L + +R+ L+ +C+LHTI Sbjct: 295 KSNFAIQSSETAYLFMQYFLKKLKIGGRAGLIIKNTFLSNPDAAS-LRQLLLKECNLHTI 353 Query: 338 LRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEH 397 + LP +F GV+T LFF KG T D++ Y L + + GK P + Sbjct: 354 VDLP-KVFGTTGVQTVALFFEKGKK---------TKDIFYYQLNLD-RNIGKTNPLNKKD 402 Query: 398 LQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRT 457 L+ F+ ++ + + L+ + + E Sbjct: 403 LEEFDDLFQSRKDSKNSWK-------------ISINDIDKETWDLSPTN---PNVEDTSE 446 Query: 458 AKSDSLDISWLKDKDSIDADSLPEPDVLA 486 ++ S I+ ++ DS A ++ L Sbjct: 447 KRTPSEIIAEIEALDSEAAKAMAAIKELL 475 >UniRef50_A6EUA8 Type I restriction-modification n=1 Tax=unidentified eubacterium SCB49 RepID=A6EUA8_9BACT Length = 600 Score = 246 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 91/543 (16%), Positives = 184/543 (33%), Gaps = 90/543 (16%) Query: 1 MNN-NDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK------------------ 41 MNN + K+W++ + LR G +Y + + L+ Sbjct: 1 MNNFKEKADKIWEVANLLR-GDYKRSDYGKVILPMTVLRRLDCVLAPKKQLVLDTLPKVE 59 Query: 42 ----ETGQEA---------EYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQA 88 ET ++ + + +D + + R + +++++ Sbjct: 60 KLEGETAKDKVLNATAGMNFHNRSKFDFDKIIADPN-NVASNLRNYINGFSTSAREIIEY 118 Query: 89 V-FHNVSTTITEP--KQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSG 145 F + + +P + +V + + G ++E L+++ A ++ Sbjct: 119 FNFDDQIDRMDDPKADILFRVVKAFQGIKL----ESMDSMEMGYVFEDLIRRFAEQSNET 174 Query: 146 AGQYFTPRPLIKTIIHLLKPQPRE---------VVQDPAAGTAGFLIEADRYVKSQTNDL 196 AG++FTPR +IK ++++L + E + DPA GT G L +++VK + Sbjct: 175 AGEHFTPREVIKLMVNMLFNEDSEILTKEGIVKTLYDPACGTGGMLSVGEQHVKELNPNA 234 Query: 197 DDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGEN 256 G E+ P + + + L+ + ++ GNT DG Sbjct: 235 ------------ELKVFGQEINPESYAICKSDMLIKGQNPS-----NVKFGNTFTVDGLE 277 Query: 257 LPKAHIVATNPPFGSAAGT---------------NITRTFVHPTSNKQLCFMQHIIETLH 301 + + +NPPFG + ++ L F+QH+I + Sbjct: 278 DEQFDYMLSNPPFGVDWKKAQKIIKAEHENKGMQGRFGAGLPRINDGSLLFLQHMISKMK 337 Query: 302 PGG-RAAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFF 357 P G R A+V + LF G ++IR+ +++ L I+ +P +FY G+ T V Sbjct: 338 PSGTRIAIVFNGSPLFSGSAGSGESEIRKWIIENDWLEAIVAMPDQLFYNTGISTYVWLV 397 Query: 358 TKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTE 417 + D F + + E P + + Sbjct: 398 NNKKEEKRKGKVQLINATGTKDEELIADEKLDVNRFWKKMDKSLGSKRKEIPENGNSKGI 457 Query: 418 GEWSFNAEETEVADSEENKNTDQ----HLATSRWRKFSREWIRTAKSDSLDISWLKDKDS 473 G S E + + + + + K + I +K S L+D ++ Sbjct: 458 GFVSQLYGNFEENEFSKILPNEYFGYWRVTVEQPLKDEKGQIVKSKGKPKADSKLRDYEN 517 Query: 474 IDA 476 I Sbjct: 518 IPF 520 >UniRef50_Q10WB4 N-6 DNA methylase n=5 Tax=Bacteria RepID=Q10WB4_TRIEI Length = 677 Score = 245 bits (625), Expect = 3e-63, Method: Composition-based stats. Identities = 100/602 (16%), Positives = 203/602 (33%), Gaps = 100/602 (16%) Query: 6 LVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK------------------------ 41 +V+ +W + D++ Y + + + ++ Sbjct: 9 IVSFIWGIADDVLRDIYVRGKYRDVILPMTVIRRLDCLLEPTKAAVLKENNFYENMEISD 68 Query: 42 -----ETGQEAEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAV-FHNVST 95 E + Y G+ L + L ++ ++++ F N Sbjct: 69 KSGLTEFTKYPFYNTSGFTLKKLLDEPRS-IKENLIDYLNGFSDNVQEIINKFKFRNQLE 127 Query: 96 TITEPKQITALVSNMDSLDWYNGAH------------GKSRDDFGDMYEGLLQKNANETK 143 T+ E K++ AL+ D G S G ++E L++K E Sbjct: 128 TLVEHKRLYALIQKFTDSDINLSPEPRKDKKGKVIQPGLSNLGMGYVFEELIRKFNEENN 187 Query: 144 SGAGQYFTPRPLIKTIIHLLKPQPREVV-------QDPAAGTAGFLIEADRYVKSQTNDL 196 AG++FTPR +IK +++L+ ++ + D A G+ G L EA+ ++ + Sbjct: 188 EEAGEHFTPRDIIKLMVNLIFMPVKDQIKNTTYLVYDCACGSGGMLTEAENFLLELATGM 247 Query: 197 DDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGEN 256 ++ G E+ P T + + L+ + I+ +TL SDG Sbjct: 248 G--------KKVVIHLFGQEVNPETYAICQADMLIK-----VKETDNIKYASTLASDGFP 294 Query: 257 LPKAHIVATNPPFGSAAGTNITR-----------------------TFVHPTSNKQLCFM 293 + NPP+G + + + + +S+ QL F+ Sbjct: 295 DFTFDFMLANPPYGKSWKVDQDKILVGRKKEVKDNRFLVKHQGEELQLIPRSSDGQLLFL 354 Query: 294 QHIIETLHP----GGRAAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGIFY 346 + + + G R A+V + LF G ++IRR +++ L I+ LP +FY Sbjct: 355 VNKLSKMKDSTKLGSRIAIVHNGSALFTGDAGSGESNIRRWIIENDWLECIVGLPLNMFY 414 Query: 347 AQGVKTNVLFFTKGTVANPNQDKNCTD-DVWVYDLRTNMPSFGKRTPFTDEHLQPFERVY 405 G+ T + + D W LR ++ S K E + + Sbjct: 415 NTGIATYIWIISNKKSVERRGKVQLIDGREWYGKLRKSLGS--KSCELRGEDIDRITEEF 472 Query: 406 GEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDI 465 + + R F + V E + +R ++F + + Sbjct: 473 LDFSESDNSRIFDNEDFGFHKIVV---ERPLRFSFQVTAARVQEFGEKMGDDLLGVVDIL 529 Query: 466 SWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALMRELGASDEADLQRQLLEEAFG 525 L ++ +L + D A + +LD L+ ++ + + +L++ Sbjct: 530 RGLFGEEVQWDFNLVKRDFEKALKVEGWNLKKRDLD-LIYQIFTEKDERGEAVILKQTKK 588 Query: 526 GV 527 GV Sbjct: 589 GV 590 >UniRef50_B3EIH7 N-6 DNA methylase n=2 Tax=Chlorobium/Pelodictyon group RepID=B3EIH7_CHLL2 Length = 772 Score = 245 bits (624), Expect = 4e-63, Method: Composition-based stats. Identities = 80/442 (18%), Positives = 141/442 (31%), Gaps = 89/442 (20%) Query: 3 NNDLVAKLWKLCDNLR-DGGVSYQNYVNELASLLFLKMCKETGQEAE------------- 48 L +LW D LR + G+ Q Y + L+FL Sbjct: 13 TAALEKRLWDAADQLRANSGLKAQEYSAPVLGLIFLLFADVRFAARRAELESAKSSTRRG 72 Query: 49 ---------------YLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNV 93 YL R+ L +R E + + E + + V Sbjct: 73 SRVDDPAAYHAEGVLYLSPEARFGYLLNRPEAENIGVMVNEAMRDIEKHNQQLAGVLPKT 132 Query: 94 STTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153 + + + L+ + + D FG +YE L + A G G+++TP Sbjct: 133 Y-YLFDSPLLKQLLKKVSEI-----PASMDYDAFGRIYEYFLGEFAMSEGQGGGEFYTPV 186 Query: 154 PLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLD---------------- 197 +++ + +++P + DPA G+ G + + R+V Q Sbjct: 187 SIVRLLTEVIEPYHG-RILDPACGSGGMFVSSARFVAQQKAKTRLTPPSSPALLPEVEGG 245 Query: 198 ----------------------DLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE 235 D+ + D + G+E T RL +N +H +E Sbjct: 246 EEYAPSSTRSLPKVEGGLSVGHDVTQYSGDPNRELSIHGIEKTDETGRLCRLNLAVHGLE 305 Query: 236 GNLDHGGAIRLGNTLGSDGENL-PKAHIVATNPPFGSAAGTN-----------ITRTFVH 283 G + HGG + N+ D V NPPF A + Sbjct: 306 GRIMHGGNV---NSYYDDPHEATGNFDFVLANPPFNVNAVDKERLKDSVGPGRRFPFGLP 362 Query: 284 PTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTG 343 T N ++Q L+ GRA V+ ++ +IRR L++ + ++ + Sbjct: 363 RTDNANYLWIQLFYSALNERGRAGFVMANSASDARSSEQEIRRQLVEIRAVDVMVAVGPN 422 Query: 344 IFYAQGVKTNVLFFTKGTVANP 365 +FY + + FF K Sbjct: 423 MFYTVTLPCTLWFFDKAKAKAR 444 >UniRef50_Q31IU5 Type I restriction-modification system, M subunit n=5 Tax=Bacteria RepID=Q31IU5_THICR Length = 709 Score = 243 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 108/596 (18%), Positives = 204/596 (34%), Gaps = 108/596 (18%) Query: 6 LVAKLWKLCDNLRDGG-VSYQNYVNELASLLFLKMCKETG-------------------- 44 + +LWK D LR G ++ Y + ++FL+ Sbjct: 10 IEKRLWKSADGLRSGSELASNEYFMPVMGIIFLRHAYSRYLKVKEEIVTTLPSRGGKTRD 69 Query: 45 --------QEAEYLPEGYRWDDLKSRIG-QEQLQFYRKMLVHLGEDDKKLVQAVFHNVST 95 + A +L ++D L S ++ + + + + +D L + + Sbjct: 70 LTLEDFSQKGAIFLNAKAQFDYLVSLTDSDDRAEAIIEAMESIEKDYDSLKGQLPKDEYK 129 Query: 96 TITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPL 155 +I + L+ N++ + D FG +YE L + A + G++FTP + Sbjct: 130 SIPNE-ILGTLLRNLN----PDELKKMDGDIFGRIYEYFLTQFAGQGAHDGGEFFTPISI 184 Query: 156 IKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGL 215 ++ I+++++P V DPA G+ G +++ V+S + L F G Sbjct: 185 VQMIVNVIEPDHG-KVFDPACGSGGMFVQSAHLVESMHKNPSQL----------LTFYGH 233 Query: 216 ELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENL--PKAHIVATNPPFGS-- 271 E T RLA MN +H +EG + G T D V NPPF Sbjct: 234 EKNTTTTRLAKMNLQVHGLEGQIAGGN---EAITYYKDPHEGLWGDTDFVMANPPFNVDE 290 Query: 272 ----AAGTNITRTFVHP-------TSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGK 320 + F P SN + + L GRA V+ GGK Sbjct: 291 VDADKIKNDRRLVFGLPGVNKNGKVSNGNYLWASYFYSYLSDTGRAGFVMSSQASSAGGK 350 Query: 321 GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDL 380 ++R++L+ H+ ++ + + FY + V + F+ KG D V + D Sbjct: 351 EAEVRKELVKTGHVDAMIDIRSNFFYTRSVPCQLWFYNKGKPQE------HLDKVLMVDA 404 Query: 381 RTNMPSFGKRT-PFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEE----- 434 R ++ F+ E LQ ++ + E S+ + ++A++ Sbjct: 405 RNVFRKVTRKIYDFSLEQLQNLTSIFWLYRGQTNRFIELVKSYIQQSLDLANALFKADQE 464 Query: 435 -----------------------NKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDK 471 ++ + +++ +I+ K + D Sbjct: 465 LPGLVEFTANMTAISEAVKPFYLIQDEPYVTQLNEFQEALTLFIKDTKQYEAAVKVANDN 524 Query: 472 DSIDADSLPEPDVLAA---------EAMGELVQALSELDALMRELGASDEADLQRQ 518 ++ L + L E +LV+ + L L L E +LQ + Sbjct: 525 WDATSNDLSLFNALIEQEGELERLAETSRDLVKQVDLLYKLANRLIEVAEKELQAK 580 Score = 42.4 bits (98), Expect = 0.037, Method: Composition-based stats. Identities = 16/105 (15%), Positives = 29/105 (27%), Gaps = 3/105 (2%) Query: 391 TPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKF 450 E L+ Y + LS + + ++ D E + D L R+ Sbjct: 605 RELLVEDLKQVRYFYKQAHWLLSRFPDAKLVDIPGLVKLVDLAEIEANDWSLTPGRYVGV 664 Query: 451 SREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQ 495 + E + L+D E LA + + Sbjct: 665 APEEVDEDFDFE---ETLRDIHIELQGLNEEAAKLAEQIAQNFKE 706 >UniRef50_A6P0G2 Putative uncharacterized protein n=2 Tax=Bacteria RepID=A6P0G2_9BACE Length = 622 Score = 241 bits (616), Expect = 4e-62, Method: Composition-based stats. Identities = 102/569 (17%), Positives = 187/569 (32%), Gaps = 93/569 (16%) Query: 1 MNNNDLVAKLWKLCDNLRDG-GVSYQNYVNELASLLFLKMCKETGQEAE----------- 48 +N L A+LW+ D LR G ++ Y + L+FL+ + E Sbjct: 2 INIRKLEAELWESADLLRAGSKLTSNQYCMPVLGLIFLRYAYSRFKLVEAEILKDRPMRG 61 Query: 49 -----------------YLPEGYRWDDLKSRIGQ--------------EQLQFYRKMLVH 77 +LP ++ L L + Sbjct: 62 GRVLPVEASDFASRSALFLPREAQYAYLVELPENIPAAGLTNWRGEVMNSLGEVVNNAME 121 Query: 78 LGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQK 137 L E + + V T ++ + L+ ++ + D G +YE L K Sbjct: 122 LVEQQSEQLSGVLPKDYTMFSDE-LLAELLRIFNN----SALDEVGGDIVGRIYEYFLNK 176 Query: 138 NANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLD 197 A G +FTP+ L+K I+++L+P ++ DPA G+ G ++ +V+ + Sbjct: 177 FAKNIAQDDGVFFTPKSLVKMIVNVLEPTQG-ILLDPACGSGGMFVQTGDFVEHAGMLAN 235 Query: 198 DLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENL 257 + F G E V +L LMN +H + G + G NT D NL Sbjct: 236 NT----------MTFYGQEKVEYNAKLCLMNLAVHGLNGIVKSGD---EANTFYHDAHNL 282 Query: 258 P-KAHIVATNPPFGSAAGTNI------TRTFVHPT-------SNKQLCFMQHIIETLHPG 303 V NPPF + F P+ N ++ + L+ Sbjct: 283 EGCCDYVMANPPFNVDKVKSESAQSAGRLPFGLPSVNKNKEIGNGNYLWISYFYAYLNEQ 342 Query: 304 GRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVA 363 GRA V+ + GK DIR L+ H+ ++ + FY + + ++ FF KG Sbjct: 343 GRAGFVMASSATDSQGKDKDIREQLVKTGHVAVMVSVGNNFFYTKSLPCSLWFFDKGKRE 402 Query: 364 NPNQDKNCTDDVWVYDLRTNMPSFGKR-TPFTD---EHLQPFERVYGEDPHGLSPRTEGE 419 D V D R + ++D ++L +Y + + Sbjct: 403 E------LRDKVLFIDARNYYTVVDRTLNEWSDWQLKNLNAIVWLYRGEVDKYQALVKEY 456 Query: 420 WSFNAEETEVADSEENK-----NTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSI 474 + + E + + + ++ ++ AK D + ++ Sbjct: 457 DRALVHHVTLMHANELLPAVHERRNFSEVVTVFEEYRKQQQELAKFDLEKV--VRKDKKK 514 Query: 475 DADSLPEPDVLAAEAMGELVQALSELDAL 503 E + EA+ +A+ + Sbjct: 515 TQALWDEKLAVIDEAISTAKEAVWLTEKF 543 >UniRef50_Q0HVT0 N-6 DNA methylase n=75 Tax=cellular organisms RepID=Q0HVT0_SHESR Length = 829 Score = 241 bits (614), Expect = 7e-62, Method: Composition-based stats. Identities = 98/620 (15%), Positives = 206/620 (33%), Gaps = 113/620 (18%) Query: 3 NNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKE-------------TGQEAEY 49 +N L++ +W + D+ Y + + ++ L+ Q+ E Sbjct: 6 HNKLISFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKEAVLEEVKFQKEEM 65 Query: 50 LPEGYRWDDLKSRIG----------------------QEQLQFYRKMLVHLGEDDKKLVQ 87 + LK+ G Q L + + L+ ++ K++++ Sbjct: 66 QATELDDEPLKAASGYVFYNTSKWTLKSLFNTATNNQQILLANFEEYLLGFSDNVKEIIE 125 Query: 88 AV-FHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDD-----------FGDMYEGLL 135 + + + + +V S D G ++E L+ Sbjct: 126 CFNLKSQIRHMASKQVLLDVVEKFVSPYINLTHETVEDPDGNKMPALTNLGMGYVFEELI 185 Query: 136 QKNANETKSGAGQYFTPRPLIKTIIHLLKPQPRE------VVQDPAAGTAGFLIEADRYV 189 +K E AG++FTPR +I+ + HL+ ++ V DPA G+ G L E+ ++ Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPVKDQLPLTMTVYDPACGSGGMLTESQNFI 245 Query: 190 KSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNT 249 + + + + + G E+ T + + ++ I++G+T Sbjct: 246 EEKYPNDPSVKTKRDVY-----LYGKEINDETYAICKSDMMIKGNNPE-----NIKVGST 295 Query: 250 LGSDGENLPKAHIVATNPPFGSAAG---------------------TNITRTFV-----H 283 L +D + + +NPP+G + + Sbjct: 296 LSTDEFAASRFDFMLSNPPYGKSWASEQKHIKDGSDVIDPRFKVSLKDYWGNLEVVDATP 355 Query: 284 PTSNKQLCFMQHIIETLHP------GGRAAVVVPDNVLFEGGK---GTDIRRDLMDKCHL 334 +S+ QL F+ ++ + G R A V + LF G ++IRR +++ L Sbjct: 356 RSSDGQLLFLMEMVNKMKDPSVSPLGSRIASVHNGSSLFTGDAGGGESNIRRFIIENDML 415 Query: 335 HTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVY-DLRTNMPSFGKRTPF 393 I++LP +FY G+ T + D +Y LR N+ K F Sbjct: 416 DAIVQLPNNLFYNTGITTYIWVLNNNKPEARKGKVQLIDASLLYRKLRKNL--GNKNCEF 473 Query: 394 TDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNT--DQHLATSRW---- 447 EH+ Y + +A + + R Sbjct: 474 APEHITEITDTYLACVDVERALDATAPEGMGDPVGIASKVFSNEDFGYYKVTIERPDRRR 533 Query: 448 RKFSREWIRTAKSDSL-----DISWLKDKDSIDADSLPEPDVLAAEAMGELVQALS-ELD 501 KF++E I + D + + + + + + P + E ++++ ++ Sbjct: 534 AKFTQEAIAPLRFDKQLSEVMEYVYAEHGERVYEKTAPSNNKEGDEKKRSFLKSIEKDIL 593 Query: 502 ALMRELGASDEADLQRQLLE 521 + E S A + +LL+ Sbjct: 594 SWCEENDISLNAKAKAKLLD 613 >UniRef50_C0XNK7 Type I restriction-modification system, methyltransferase subunit n=1 Tax=Corynebacterium lipophiloflavum DSM 44291 RepID=C0XNK7_9CORY Length = 667 Score = 240 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 99/583 (16%), Positives = 192/583 (32%), Gaps = 106/583 (18%) Query: 4 NDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKET-------------------- 43 N L A +W+ D+ V +NY + + L+ + Sbjct: 20 NRLNAAIWQTADDYLRLIVPAENYGDYIIPFTVLRRLEGRLESTKKDVLDLVHRENVKGT 79 Query: 44 ------------GQEAEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAV-F 90 + + + L + ++ L + ++ A F Sbjct: 80 DPAIVALKIESMFKLRFWNTSELSLERL-ATSDDALKPGLKQYLNTFSPNILEIWDAFEF 138 Query: 91 HNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYF 150 + + Q+ +V++ S+D GD++E L+ ++ AG+++ Sbjct: 139 DKLIDFLDRNNQLWNVVNHFASIDM--SDEALQDQTMGDIFENLMYRSFARKAKDAGEFY 196 Query: 151 TPRPLIKTIIHLLKPQPRE---------VVQDPAAGTAGFLIEADRYVKSQTNDLDDLDG 201 TPR I+ + +L V DP AGT G LI A +++ ++ + Sbjct: 197 TPRDAIRLMTSILFTSDDTELEEDGIIRSVYDPTAGTCGMLIAARDALRAINPGIEVVVA 256 Query: 202 DTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAH 261 G EL + + + L+ + ++ GN+L +D Sbjct: 257 ------------GQELKESSFAMGKSDLLMQGFKDPEV----LKFGNSLTNDQYANDTFD 300 Query: 262 IVATNPPFGSAAG-------------TNITRTFVHPTSNKQLCFMQHIIETLHP------ 302 + NPP+GS+ + S+ Q+ F+ HI L P Sbjct: 301 YIMANPPYGSSWKAFQNEVKALQEGGDPRFSEGLPAVSDGQMLFLMHIAHKLAPASGDTK 360 Query: 303 GGRAAVVVPDNVLFEGGKGT---DIRRDLM----DKCHLHTILRLPTGIFYAQGVKTNVL 355 GGRAAVV + LF G + IR+ L+ L I+ LP +FY G+ T + Sbjct: 361 GGRAAVVTNGSPLFTGDAESGPDSIRKYLIGAQGGTEVLDAIIALPNDMFYNTGIATYIW 420 Query: 356 FFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFG-----KRTPFTDEHLQPFERVYGEDPH 410 + + D KR FT+++++ ++Y + Sbjct: 421 ILDQNKEPR------RRGRIQFIDATEICAPMRKNMGQKRVEFTEDNIREITKIYKDFEE 474 Query: 411 GLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKD 470 A++ D K ++ + + + + + +++ Sbjct: 475 TERSIIVT-----ADDLTYRDVPMFKVAHYAVSVTD--ETVAQALSHKSAFPEHEEVIRE 527 Query: 471 KDSIDADSLPEPDVLAAEAMGELVQALSELDALMRELGASDEA 513 D + LP+ +A+A G + L +M L DE Sbjct: 528 MKGRDYNDLPKALKASAKAHG-VKTGAPLLKHIMAALAVEDEN 569 >UniRef50_C7P732 N-6 DNA methylase n=1 Tax=Methanocaldococcus fervens AG86 RepID=C7P732_METFA Length = 1068 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 90/467 (19%), Positives = 172/467 (36%), Gaps = 45/467 (9%) Query: 1 MNNNDLVAKLWKLCDNLRDGG-VSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDL 59 ++ ++L+ L K+ D + GG ++ +E++ L+F K+ E E YR+ Sbjct: 185 VSRDELIRVLEKVHDTVWQGGKLAPTTAFDEVSKLIFCKIWDEKTTRKG---EYYRFQIG 241 Query: 60 KSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGA 119 + ++ +K + ED KK VF EP+ + ++V + ++ Sbjct: 242 SNESAKDVFDRIKK----IYEDAKKKDPYVFAEDIK--LEPEIVYSVVEQLQEINL---- 291 Query: 120 HGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPRE------VVQD 173 D G +E ++ K GQYFTPR +I ++ E V D Sbjct: 292 KDTDLDTKGVAFERFMEDFF---KGKMGQYFTPREIINFMVEFAMLHFDEDEYLNLKVLD 348 Query: 174 PAAGTAGFLIEADRYVKSQTNDLDDLDGDTQD--FQIHRAFIGLELVPGTRRLALMNCLL 231 PA G+ GFL+ +++ D Q G+E+ R+ MN +L Sbjct: 349 PACGSGGFLLHVLDFIRRWAEGNYDKFEAYQHWHEFAKNNIYGIEINEQISRVCKMNMIL 408 Query: 232 HD-IEGNLDHGGAIRLGNTLGSDGENLPK--AHIVATNPPFGSAAGTNITRTFVH----- 283 HD N+ A+ + ++ K ++ TNPPFG+ + + + Sbjct: 409 HDDGHTNIISFDALEDFEKIEKIHKDFKKGSFDLILTNPPFGAKIKKSERKYIENYELGK 468 Query: 284 --PTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLP 341 + ++ F++ E L GG +V+PD +L +R ++++ + ++ LP Sbjct: 469 GRTSQKTEILFIERCWEFLKEGGILGIVLPDGILTNSTL-QYVRDFILNRFRVLAVISLP 527 Query: 342 TGIF--YAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQ 399 F Y GVK++++F K +++ R L Sbjct: 528 NFAFTHYGAGVKSSLVFLQKKKEGEDLG----NYPIFMAIAEHIGYDATGRKD-EKNDLP 582 Query: 400 PFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSR 446 Y E + + +F + E + + R Sbjct: 583 DILEAYKEFLKT--GKLKKNLNFEGFIVYRNELEGRLDAYYYKDEFR 627 >UniRef50_B9M294 N-6 DNA methylase n=2 Tax=Proteobacteria RepID=B9M294_GEOSF Length = 818 Score = 238 bits (607), Expect = 4e-61, Method: Composition-based stats. Identities = 105/477 (22%), Positives = 184/477 (38%), Gaps = 66/477 (13%) Query: 6 LVAKLWKLCDNLRDGGVSYQ-NYVNELASLLFLKMCKETGQEAEY--------LPEGYRW 56 + K+ +L + G++ V ++ LLFLK ++ + + E +W Sbjct: 6 IKKKVDELWNRFWAAGLTNPLVAVEQITYLLFLKRLEDIDLKRQQRGLPSIYADNETCKW 65 Query: 57 DDLKSRIGQE--QLQFYRKMLVHLGEDDKK---------LVQAVFHNVSTTIT--EPKQI 103 ++ + L L + K + + + + K + Sbjct: 66 GYIRQEKTNPSHLINVVFPWLRELDKHFKPESDEPSELASLNNRMADAYFQLDPSKGKVL 125 Query: 104 TALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLL 163 + + +D L G ++D GD +E LL + A GQ+ TPR LI+ ++ LL Sbjct: 126 SDAIDAVDQLFARAGEGSAAQDIMGDTFEYLLSEVATA--GKNGQFRTPRHLIRFMVELL 183 Query: 164 KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDL-----------------DGDTQDF 206 P+P + V DPAAGT GFL +Y+ + + ++L Sbjct: 184 DPEPSQRVIDPAAGTGGFLFSTQQYLMRKYSAQENLVLEWDGTPHRTDGAAATSEQYAAI 243 Query: 207 QIHRAFIGLELVPGTRRLALMNCLLHDI-EGNLDHGGAI--RLGNTLGSDGENLPKAHIV 263 F+GL+ R+ MN +LHD+ + +L G ++ R G + V Sbjct: 244 HHGANFVGLDNDRTMARIGWMNLILHDLTDPHLLQGDSLSKRDGKPELARLMESETYDFV 303 Query: 264 ATNPPFGSAAGTNI---------------TRTFVHPTSNKQLCFMQHIIETLHPGGRAAV 308 NPPF +N + T+ +L F+ +++ L GGR AV Sbjct: 304 LANPPFTGTVDSNDLEKDSKIFPRAAERGKKKEDAITNKSELLFLWLMLDLLQVGGRCAV 363 Query: 309 VVPDNVLF-EGGKGTDIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANPN 366 ++P+ VLF +RR+L+ + + ++ LP G+F GVKT++L F K T + Sbjct: 364 IIPEGVLFGNTDAHVRLRRELLTEHVVEGVISLPGGVFQPYTGVKTSILIFRKETRRDDK 423 Query: 367 Q-----DKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEG 418 Q T+ VW Y++ + S + + LS EG Sbjct: 424 QTFTGTTAPRTEYVWFYEVEEDGYSLNAKRNEQPGQRNDLWDALEKFKAWLSHGREG 480 >UniRef50_A3DAQ0 N-6 DNA methylase n=1 Tax=Shewanella baltica OS155 RepID=A3DAQ0_SHEB5 Length = 565 Score = 238 bits (607), Expect = 4e-61, Method: Composition-based stats. Identities = 84/473 (17%), Positives = 156/473 (32%), Gaps = 71/473 (15%) Query: 2 NNNDLVAKLWKLCDNLR-DGGVSYQNYVNELASLLFLKMCKETG---------------- 44 N + +LWK D LR + ++ Y + L+FL+ Sbjct: 6 NIEAIEKRLWKSADTLRANSELASNEYFLPVMGLIFLRHAYSRYLSVKDEIVTTLPSRGG 65 Query: 45 ------QEAE------YLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHN 92 +E +L ++D L + + + E D ++ Sbjct: 66 KTRELTKEDFSKKSAIFLKPDAQFDALIALTDADNRAEAIINAMDSIEADYTNLRNQLPK 125 Query: 93 VSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTP 152 + L+ ++ + D FG +YE L + A++ G++FTP Sbjct: 126 QEYNNIPNDVLGMLLRTLN----PEELKKATGDIFGRIYEYFLTQFADQGAHDGGEFFTP 181 Query: 153 RPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAF 212 L++ ++++++P + DPA G+ G +++ ++ D F Sbjct: 182 VSLVQLLVNVIEPDHG-KIFDPACGSGGMFVQSAHFMARHAQDP-----------HELTF 229 Query: 213 IGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENL--PKAHIVATNPPFG 270 G E T RLA MN +H +EGN++ G + T +D V NPPF Sbjct: 230 YGHEKNRVTTRLAKMNLAVHGLEGNVEGGES---AITYYNDPHEGLFGTVDYVMANPPFN 286 Query: 271 S--------AAGTNITRTFVH------PTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLF 316 + + SN ++Q+ L+ GRA V+ Sbjct: 287 VDEVDADKIKGDKHRLPFGLPGVNKNKKVSNGNYLWIQYFYSYLNDTGRAGFVMSSQASS 346 Query: 317 EGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVW 376 G +R L+ + ++ + + FY + V + F K A+ D V Sbjct: 347 AGRDEAKVREQLVKTGDVDIMIDIRSNFFYTRTVPCQLWFLNKNKPAHLK------DKVL 400 Query: 377 VYDLRTNMPSFGKRT-PFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETE 428 + D R ++ F+ E Q V E + + Sbjct: 401 MLDARNVYRKVTRKIYDFSPEQQQNLTAVVWLYRGEGERFIELVQQYIDKAIF 453 >UniRef50_C0MH51 Putative type I restriction enzyme methylase protein n=1 Tax=Steptococcus equi subsp. zooepidemicus H70 RepID=C0MH51_STRS7 Length = 597 Score = 238 bits (606), Expect = 6e-61, Method: Composition-based stats. Identities = 95/554 (17%), Positives = 178/554 (32%), Gaps = 83/554 (14%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK-------------------- 41 N + + +W + D LR G Y + + +K Sbjct: 18 NIKEKASLIWSIADILR-GLYKPHEYGKVILPMTVIKRLHDTLLPTRDRVLEVSKTLSNI 76 Query: 42 -----------ETGQEAEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAV- 89 +T Y + ++ L S + + L E+ + ++ Sbjct: 77 KVAQIRDRKLTDTSGYKFYNTSNFTFNSLLS-DPDNIQENFYAFLNGFSENVRDILDNFE 135 Query: 90 FHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQY 149 F + +T + A++ +S Y GA + D G ++E L+++ + AG + Sbjct: 136 FDEEISKMTNNDALFAVIQEFNSQKAYLGADTVTSTDMGYIFEELVRRFSESYGEDAGAH 195 Query: 150 FTPRPLIKTIIHLLKPQPR-------EVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGD 202 FT R +I + +L + + D GT+ L +K+ + D Sbjct: 196 FTSRDIIYLMTDILLIDEKPSDKPIVRTIYDQTMGTSQMLSAMMERIKALDANAD----- 250 Query: 203 TQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHI 262 G EL P T +A + ++ + LG+TL D + Sbjct: 251 -------VTTFGQELNPETYAIAKADTMIRGGNP-----DNMALGSTLSKDAFSGYTFDY 298 Query: 263 VATNPPFGSAAGTN--------------ITRTFVHPTSNKQLCFMQHIIETLHPGGRAAV 308 + +NPPFG + + S+ QL F + I L GR A+ Sbjct: 299 LISNPPFGIDWKKDQKAVKEEAELGEKGRFGAGLPKISDGQLLFQLNGISKLKDTGRMAI 358 Query: 309 VVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANP 365 + + LF G + IR ++ L I++LPT +FY G+ T + TK V Sbjct: 359 IHNGSALFSGNAGGGESAIREYVIMNDWLEAIIQLPTDLFYNTGISTYIWIITKNKVEER 418 Query: 366 NQDKNCTDDVW-VYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPR----TEGEW 420 D R N+ K+ + + YGE + + E + Sbjct: 419 RGKVQLLDASRAFVKRRKNI--GDKKVDIEKAQRELIVQAYGEFANQIYIEGDTAVESKI 476 Query: 421 SFNAEETEVADSEENKNTDQHLATSRWRKFSRE-WIRTAKSDSLDISWLKDKDSIDADSL 479 N E D+ R + ++ + ++ D+ Sbjct: 477 FDNNFFGYRKVVVETPMYDEDGNIVRNKNGKATPDTSKRNTEDIPLTEDVDEYITREVLP 536 Query: 480 PEPDVLAAEAMGEL 493 PD ++ ++ Sbjct: 537 FNPDAWVDDSKTKI 550 >UniRef50_Q5YY36 Putative restriction-modification system endonuclease/methyltransferase n=1 Tax=Nocardia farcinica RepID=Q5YY36_NOCFA Length = 966 Score = 238 bits (606), Expect = 6e-61, Method: Composition-based stats. Identities = 111/523 (21%), Positives = 182/523 (34%), Gaps = 74/523 (14%) Query: 8 AKLWKLCDNLRDGGVSYQ-NYVNELASLLFLKMCK----------------ETGQEAEYL 50 A+L+ C GG+S V++L+ L++L E + Sbjct: 12 ARLFDAC---WAGGISNPLEVVDQLSHLVYLHELDRAQAGWDERGARSETIEREPIFAHD 68 Query: 51 PEGYRWDDLKSRIGQEQLQFYRKMLVHLGED---DKKLVQAVFHNVSTTITEPKQITALV 107 + RW L Q + + + +V TI P + +V Sbjct: 69 EQHLRWSHLVRLTPQRMFTTIADDVFPWLRNHEFKRLAYSRHVEDVRFTIPTPGLLAKVV 128 Query: 108 SNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQP 167 ++ A D+YE LL K A + G + TP L ++ + P P Sbjct: 129 DVLNEALSTGDAEA------ADLYEHLLAKVATAGR--FGAFRTPLHLTALMVAMTAPGP 180 Query: 168 REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALM 227 + V DP GT G L A +++ ++ G + RL+ M Sbjct: 181 DDEVCDPTCGTGGLLTAAAQFML----TSRSGTAQQSKAEVSGRLHGFDFDRTMLRLSSM 236 Query: 228 NCLLHDIE-GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTS 286 LH +L H + + G + +V NPPF + + Sbjct: 237 RLALHGYGAADLRHRDNLSV-----EAGTEFERYSVVLANPPFAGSVDYETAAPELLAAV 291 Query: 287 NKQLCFMQH---IIETLHPGGRAAVVVPDNVLFEG-GKGTDIRRDLMDKCHLHTILRLPT 342 + + H I+ L PGGRAAV+VPD +LF ++RR L+++ L +++LP+ Sbjct: 292 RTKKSEILHPIAILRLLKPGGRAAVIVPDGLLFGSTAAHAELRRILVEEHGLEAVVKLPS 351 Query: 343 GIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRT-PFTDEH--- 397 G F GV T +LFFTK TD VW YDL+ + S + P E Sbjct: 352 GTFKPYAGVSTAILFFTK--------YAGQTDYVWFYDLKADGWSLDDQRAPLLPEDKLG 403 Query: 398 ----------------LQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQH 441 L R + RT E SF +E+A N + + Sbjct: 404 LTPESLLDTADHTRNNLPDLIRRWRLRNGSERRRTRSEQSFCVTRSEIAAVGYNLSLENF 463 Query: 442 LATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDV 484 + ++E +R + ++ D + + D Sbjct: 464 RRIHEMHRVAQEGVRLGDFAQIFTGSVRKSDLDMERDVADTDE 506 >UniRef50_Q4KCG2 Type I restriction-modification system, M subunit n=1 Tax=Pseudomonas fluorescens Pf-5 RepID=Q4KCG2_PSEF5 Length = 580 Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats. Identities = 115/586 (19%), Positives = 212/586 (36%), Gaps = 74/586 (12%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYV--NELASLLFLKMCKETGQEAEY--------- 49 M ++ K L D + G++ YV ++A L+FLK + + Sbjct: 1 MLPLEIKNKAASLWDLVSGAGLASSPYVALEQIACLIFLKRLDDIASADDEEGLPSVFQV 60 Query: 50 -LPEGYR--------WDDLKSRIGQEQLQFYRKMLVHLGED------------DKKLVQA 88 +P+ W +L + ++ + + + + Sbjct: 61 LMPDEVHPPNKHHSFWKNL--LMHRDPGTYLNDQIFPWLRSLEMRTGNYPSLVKRLGLNG 118 Query: 89 VFHNVSTTIT--EPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGA 146 + + + + + +T LV +D L Y G + G+++E L + + + Sbjct: 119 MLSDAYFQLDPSKSQALTGLVHAIDELFPYPGQKRQEGFSPGEVFEYLFTQGSTSSN--I 176 Query: 147 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDF 206 G T R + + ++ LL P P + + DPAAGT GF++ A +Y+ S+ L Sbjct: 177 GPLVTARHITRFMVALLAPLPGQRIIDPAAGTGGFMVSAQQYMLSRHARLSAATKKQIHN 236 Query: 207 QIHRAFIGLELVPGTRRLALMNCLLHDIE-GNLDHGGAIRLGNTLGSDGENLP-KAHIVA 264 + +G++L R+ +N LLHDIE G ++ G++ G+ G L V Sbjct: 237 G--HSLVGIDLSHTLARIGWVNLLLHDIESPQCMQGNSLVTGDSQGAAGRWLKESYDFVL 294 Query: 265 TNPPFGSAAGTNIT--RTFVH---------PTSNKQLCFMQHIIETLHPGGRAAVVVPDN 313 ++ PFG ++ + +L F+ + L GG AA+++P N Sbjct: 295 SDLPFGGRIDPQEAAGANYLPFYARDDQGNRSDKVELLFVWRALNLLQVGGSAALIIPQN 354 Query: 314 VL-FEGGKGTDIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVAN----PNQ 367 +L D+RR+L+ + + ++ LP IF G+K +L K T P+ Sbjct: 355 LLVGRSQAQIDLRRELLSRHSVEAVILLPGAIFNPYTGIKAAILVVRKVTDHQALASPHV 414 Query: 368 DKNCTDDVWVYDLRTNMPSFG-KRTPFTDEHLQPFERVYGEDP------HGLSPRTEGEW 420 TD VW Y++ + S KR + + + + Sbjct: 415 APPQTDAVWFYEVTQDGHSMDHKRKELPADADNDLFDAFVHFRRRQLSAELWERGRDLYF 474 Query: 421 SFNAEETEVADSEENKNTDQHLATSRW-----RKFSREWIRTAKSDSLDISWLKD--KDS 473 AEE S N +W RK S D KD D Sbjct: 475 QAGAEEGPYWTSLHNVIERGSTQVKQWLVPVRRKLRGSEALFPDSLDPDCIEAKDWSLDI 534 Query: 474 IDADSLPEPDVLAAEAMGELVQALSELD-ALMRELGASDEADLQRQ 518 D + +P +L+ L +L+ ++ +L + + Q Sbjct: 535 DDYKVIEQPKSAGENTALQLIDELEQLELKVIEQLRQLRDEIGEVQ 580 >UniRef50_B0T4G1 N-6 DNA methylase n=2 Tax=Bacteria RepID=B0T4G1_CAUSK Length = 657 Score = 234 bits (597), Expect = 7e-60, Method: Composition-based stats. Identities = 87/479 (18%), Positives = 161/479 (33%), Gaps = 70/479 (14%) Query: 9 KLWKLCDNLRDG--GVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLKSRIGQE 66 ++ C N G G+ EL L+F K+ E PE + R G Sbjct: 183 FAFRRCHNYIAGNQGLQKPQAFWELLKLIFCKIHDERDS-----PEVEFFASANERTGIN 237 Query: 67 QLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDD 126 +K + L + K+ A+F +P + +VS + D Sbjct: 238 GPLKVKKRIDGLFDAVKEDYPAIFQANDVVALKPPVLAYIVSQLQMYSLLES----DVDV 293 Query: 127 FGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEAD 186 G YE ++ + + G++FTPR + + +L P + + DPA GT GFLI A Sbjct: 294 KGHAYEEIVG---SNLRGDRGEFFTPRNICNMAVSMLDPSEGQTILDPACGTGGFLISAM 350 Query: 187 RYVKSQ------------TNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI 234 +V + D +GL+ P + MN ++++ Sbjct: 351 NHVIEKIRVAELEKWKGDYGRADPKIAARISKFAGACIVGLDFNPELVKATKMNMVMNND 410 Query: 235 EG-NLDHGGAIRLGNTLGS---DGENLPKAHIVATNPPFGSA---AGTNITRTF------ 281 L ++ T D + + ++ TNPPFGS I + Sbjct: 411 GAGGLYQANSLESPATWEEALRDRKLIGSVDLIFTNPPFGSKIPVDDPAILEKYDLGHSW 470 Query: 282 --------------VHPTSNKQLCFMQHIIETLHPG-GRAAVVVPDNVLFEGGKGTDIRR 326 + + ++ F++ ++ L PG GR A+V+PD +L G G +R Sbjct: 471 SYNEEIDSWTMNESIQKSQPPEILFIERCVKFLKPGTGRVAMVLPDGILGSPGLG-YVRE 529 Query: 327 DLMDKCHLHTILRLPTGIF-YAQGVKTNVLFFTKGTVA----NPNQDKNCTDDVWVYDLR 381 ++ + + L F V+T+VL + T + +V++ Sbjct: 530 WILKNTWVLASIDLHPDTFQPNVSVQTSVLVLQRKTDEQIALEDAAGRKNDYNVFMAVAN 589 Query: 382 TNMPSF---------GKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVAD 431 K +E ++ + Y + + + ++A Sbjct: 590 HIGHDKRGNKTYVRDRKGNEIVEE-IEEDTKEYIDGQPIYKKQKTQRKVSDDNTLQIAQ 647 >UniRef50_A6GSS6 Type I restriction-modification system methyltransferase subunit n=1 Tax=Limnobacter sp. MED105 RepID=A6GSS6_9BURK Length = 682 Score = 234 bits (596), Expect = 8e-60, Method: Composition-based stats. Identities = 92/496 (18%), Positives = 164/496 (33%), Gaps = 88/496 (17%) Query: 4 NDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK---------------------- 41 + L +WK + LR G Y + L+ Sbjct: 2 SKLADLIWKNAELLR-GAYRENEYRKVILPFTILRRLDCVLAPKREEVYTQYEALRNSKY 60 Query: 42 ETGQ-------EAEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAV-FHNV 93 + + + + + L ++ + M+ ++ + + + F + Sbjct: 61 DMEKILTTISDYPFFNTSRFSLEAL-AQTPDDVRDNLEAMVNGFSQNVRDIFEKFGFIST 119 Query: 94 STTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153 + E ++ +V D S D G +E LL+K + + AG+ +TPR Sbjct: 120 INKLEEKGRLYLVVQRFAETDL--NPDVVSNHDMGMAFEELLRKFNDVS--PAGEQYTPR 175 Query: 154 PLIKTIIHLLK---------PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQ 204 +I+ ++ LL P + + DP AGT G L + YVK + Sbjct: 176 DVIELMVSLLFSTDQDLLSIPGIVKTMYDPTAGTGGLLSVGEEYVKRMNDRAV------- 228 Query: 205 DFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVA 264 + G EL T + + L+ I +TL D A Sbjct: 229 -----LSLFGQELEDETYAICKADMLIRGQNP-----ANIVNEDTLKIDLLAGEVFDYQA 278 Query: 265 TNPPFGSAAGT--------------NITRTFVHPTSNKQLCFMQHIIETLHP------GG 304 NPP+G + + Q+ F H++ + P GG Sbjct: 279 ANPPYGVEWKPAEDAVRREHKLGAAGRFAPGLPAIRDGQMLFSLHLLSKMRPFIDGKGGG 338 Query: 305 RAAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGT 361 R VV + LF G ++IRR +M +L I+ +PT +FY ++T + F T Sbjct: 339 RIGVVHNGSPLFAGDAGSGESEIRRYIMANDYLEAIVAMPTDLFYNTNIQTYLWFMTNRK 398 Query: 362 VANPNQDKNCTDDVWV-YDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEW 420 D + ++ N+ KR FT++ + + Y + GE Sbjct: 399 PEKRQGKVMLLDASKMGVLMKKNLGK--KRREFTEDCIAQINKAYEDFKDMTWKDPAGER 456 Query: 421 SFNAEETEVADSEENK 436 NA+ + A K Sbjct: 457 VLNAKVFDNAHFHYRK 472 >UniRef50_B0V9R4 Putative uncharacterized protein n=2 Tax=Acinetobacter baumannii RepID=B0V9R4_ACIBY Length = 760 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 111/524 (21%), Positives = 203/524 (38%), Gaps = 53/524 (10%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQ-NYVNELASLLFLKMCKETGQEAEYLPEGYRWDDL 59 ++ +L+ KL ++LR G+ ++E A++LFLK+ E W+ L Sbjct: 158 VSRKELINVFKKLNNSLRGEGLRAGIERLSEFANILFLKLYTENANTGI-------WNSL 210 Query: 60 KSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGA 119 KS + +L + D++ +VF N+ +T P + ++ +D L Sbjct: 211 KSLDNDLLINTTNNILQDI---DRQYGASVFTNLQ--LTNPVAVKEMIKELDKLKL---- 261 Query: 120 HGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTA 179 D GD +E LQ+ A T + G+YFTPR + KTI++L+ P+ E + DP GT Sbjct: 262 SSIDTDIKGDAFEYFLQQ-ATATNNDLGEYFTPRHITKTIVNLVNPKYGEKIYDPFCGTG 320 Query: 180 GFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD-IEGNL 238 GFL EA ++K T ++ + + H G E+ +LA MN +LH + Sbjct: 321 GFLTEAFDHIKDNTLIANNSSEEIK--LKHNTIFGREITSNA-KLAKMNMILHGDGHSGI 377 Query: 239 DHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIE 298 ++ + +V TN PF + ++ + H + Sbjct: 378 CQIDTLQNPI--------ESEYDVVITNMPFSQKTSYSHLYENKLAKNDGDGVCVLHCFK 429 Query: 299 TLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFF 357 GGR A+VVP+ LF+ +R+ L + L ++ LP +F VKTN+L+F Sbjct: 430 ATKKGGRMALVVPEGFLFKA-ALAPVRKYLFENAQLKAVVSLPKEVFLPYAKVKTNILYF 488 Query: 358 TKGTVANPNQDKNCTDDVWVYDLRTNMPSFGK-RTPFTDEHLQPFERVYGEDPHGLSPRT 416 T DV+ Y++ + S R + L+ + Sbjct: 489 TNCHNGR------TNSDVFYYNVTNDGLSLDSFRRKIDENDLKNL-----DFADLNKSDF 537 Query: 417 EGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDA 476 + ++ + E ++ D + +S I++ LK+ S+ Sbjct: 538 DKYYNELGFLK--VNPELIRSNDY---IYNYAHYSNSHIKSK----FPTIKLKELLSLSG 588 Query: 477 DSLPEPDVLAAEAMGELVQALSELDALMRELGASDEADLQRQLL 520 D + L + ++ AS + +++ Sbjct: 589 KVKVGEDTNIPIMSITMEHGLIDQHEKFKKRVASSDISGYKKVF 632 >UniRef50_A5IZ14 Modification (Methylase) protein of type Irestriction modification system HsdM n=2 Tax=Mycoplasma agalactiae PG2 RepID=A5IZ14_MYCAP Length = 892 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 89/592 (15%), Positives = 191/592 (32%), Gaps = 121/592 (20%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKE----------------TG 44 + L +K+W ++LR + Y + + L+ K E Sbjct: 5 ITKEKLGSKIWAAANHLR-DKLEAYEYKDYVLGLILYKFLCEKQSNYLIKNWVTKEQLKY 63 Query: 45 QEAEYLPEGYRWDDLKSRIG---------------------------------------- 64 +++YL + + Sbjct: 64 LDSKYLDNISNFSAFYTGNNLESDYEIFKDAKKECIDENGYFIDYSDLFIAWLENKSSFN 123 Query: 65 -QEQLQFYRKMLVHLGEDDKKLVQAVF----HNVSTTITEPKQITALVSNMDSLDWYNGA 119 Q+ Q + + + K L + +F ++S ++ + T ++S++ + + Sbjct: 124 IQDFQQAFNNFNNSINDAHKSLFKDLFVKFERDLSKLGSDTNEQTKVISSLLDIINDIPS 183 Query: 120 HGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPRE----VVQDPA 175 + D G +YE L+ + A+ AG+++TP + + + ++ ++ V DP Sbjct: 184 TNQDYDVLGYIYEYLIARFASSAGKKAGEFYTPHEVSELMSKIVAHHLKDRKVIKVYDPT 243 Query: 176 AGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE 235 +G+ L+ + K + + ++ EL L MN ++ +I Sbjct: 244 SGSGSLLLTIGQEFKKYNSGNSPV-----------SYYAQELKAEVFNLTRMNLIMKNIS 292 Query: 236 G---NLDHGGAIRLGNTLGSDGE----NLPKAHIVATNPPFGSAA-------GTNITRTF 281 + +G + + + + V +NPP+ Sbjct: 293 PTEIHARNGDTLEQDWPMFENNDYSSYQHLSVDAVVSNPPYSQKWNAEKHTLDPRYIEYG 352 Query: 282 VHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLP 341 + P + F+ H + + P G +V+P VLF G IR+ L+ K + TI+ LP Sbjct: 353 IAPKTKADYAFLLHDLYHVQPDGIITIVLPHGVLFRGNSEGQIRKTLIQKQQIDTIIGLP 412 Query: 342 TGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPF 401 +FY G+ T ++ K D+ D GK F+ H++ Sbjct: 413 ANMFYGTGIPTIIMILKKHRSE---------KDILFVDASKLYVKEGKNNKFSKSHIKKI 463 Query: 402 ERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSD 461 V + +E D +L SR+ ++ Sbjct: 464 ADV------------VNNRIEIENFSRRVLLDEIVANDYNLNISRYIDNFKKQ-EQHDLY 510 Query: 462 SLDISWLKDKDSIDADSL--------PEPDVLAAEAMGELVQALSELDALMR 505 SL + ++ D+ + + A EL A ++++ ++ Sbjct: 511 SLMHGGISKEELAKLDNFFDLFTGLKGKLFKINANNYYELKVAKEDINSTIK 562 >UniRef50_A8KXL5 N-6 DNA methylase n=1 Tax=Frankia sp. EAN1pec RepID=A8KXL5_FRASN Length = 775 Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats. Identities = 100/531 (18%), Positives = 175/531 (32%), Gaps = 86/531 (16%) Query: 11 WKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLKSRIGQ----E 66 W L D R G V + + L L F A+ RW +L + Sbjct: 107 WALADAYR-GKVGMSDDLMLLTGLAFA-FLHLRFHRAQ------RWTELTAAAADVEPGT 158 Query: 67 QLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDD 126 ++ L GE + + ++ +++ L+ +D L+ A Sbjct: 159 VVRLVESALRASGEAPASIAD--MSALLGDTSDVRRLVPLIQILDRLEPVPDAGSGDVAP 216 Query: 127 -FGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEA 185 G + + LL A + TP +++T + L P + V DP FL+ A Sbjct: 217 PAGRIADELLAHAATVGGWRSANVVTPPSVVRTAVRLTDPVAGDRVHDPFCRAGEFLVGA 276 Query: 186 DRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEG-NLDHGGAI 244 +++S+ G E+ P R LA MN LLH++ +L G A+ Sbjct: 277 ADHIRSRGTGS-----------PKLTVSGQEINPSLRWLARMNLLLHNLGAEDLRAGWAL 325 Query: 245 RLGNTLGSDGENLPKAHIVATNPPFGSAAGTN-------ITRTFVHPTSNKQLCFMQHII 297 D + +V NPPF + + R V P N ++QH + Sbjct: 326 SSP-----DPQPGGPFEVVLVNPPFNVSGWRDGDQNPDSSWRYGVPPGHNANYAWLQHAL 380 Query: 298 ETLHPGGRAAVVVPDNVLFEGG-KGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLF 356 L GGRA VV+P + + IR ++++ + ++ LP +F + + + Sbjct: 381 ACLAEGGRAVVVMPAGAGSSANLQESAIRAAMVEEGVVDAVVALPPRLFVSTSIPVTLWV 440 Query: 357 FTKGTVANPNQDKNCTDDVWVYDLRTNMPSF-GKRTPFTDEHLQPFERVYGEDPHGLSPR 415 + + DDV D R+ DE + Y Sbjct: 441 LRWPSPGH--------DDVLFVDAHGAGRIVERNRSELRDEDVDHIAEAYRNRAAR---- 488 Query: 416 TEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSID 475 S + D + L+ +R+ + E + + Sbjct: 489 -----STGTVLSRPVDRRRIRENGYALSPARYLTATTEPVDPLR---------------- 527 Query: 476 ADSLPEPDVLAAEAMGELVQALSELDALMRELGASDEADLQRQLLEEAFGG 526 A + +L + L EL R GA + A+ Q + + FG Sbjct: 528 ----------ARVGIEQLRRDLRELHQ--RAAGAHEHAERQLDEVGDLFGA 566 >UniRef50_C9RQV8 N-6 DNA methylase n=4 Tax=Bacteria RepID=C9RQV8_FIBSS Length = 624 Score = 233 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 107/588 (18%), Positives = 186/588 (31%), Gaps = 104/588 (17%) Query: 2 NNNDLVAKLWKLCDNLRDG-GVSYQNYVNELASLLFLKMCKETGQEAE------------ 48 + L A LW+ D LR ++ Y + LLFL+ ++ E Sbjct: 5 SLKKLEADLWESADLLRADSKLTSNQYCMPVLGLLFLRYAYGRFKKVEAELLKNRPSRGG 64 Query: 49 ----------------YLPEGYRWDDLKSRIGQ--------------EQLQFYRKMLVHL 78 +LP+ ++D L + L + L Sbjct: 65 RVLPIEASDFVSKSALFLPKEAQFDYLVNLPANIASAKLKNVHGQPLNSLGEVVNNAMEL 124 Query: 79 GEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKN 138 E + ++ V T + + L+ ++ N D G +YE L K Sbjct: 125 VEAQSEKLKGVLPKTYTDFKDN-LLAELLRTFNN----NALDDVGGDVMGRIYEYFLSKF 179 Query: 139 ANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDD 198 A S G +FTP+ L+K I+++L+P V+ DPA G+ G ++ +V + ++ Sbjct: 180 AKNIASDDGVFFTPKSLVKMIVNVLEPSYG-VLLDPACGSGGMFVQTGDFVNAAGMASNE 238 Query: 199 LDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENL- 257 F G E V +L LMN +H + G + G N+ D NL Sbjct: 239 T----------MTFYGQEKVEYNAQLCLMNMAVHGLTGVVKSGD---EANSFYHDAHNLT 285 Query: 258 PKAHIVATNPPFGSAAGT-------NITRTFVHPTS------NKQLCFMQHIIETLHPGG 304 + V NPPF + + N ++ + L+ G Sbjct: 286 GQCDYVMANPPFNVDKVKAESCQSAGRLPFGLPAVNKDKEIGNGNYLWISYFYSYLNEKG 345 Query: 305 RAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVAN 364 RA V+ + K DIR L+ H+ ++ + FY + + + FF Sbjct: 346 RAGFVMAASATDSQSKDKDIREKLVATGHVDCMISVGNNFFYTKSLPCTLWFFD------ 399 Query: 365 PNQDKNCTDDVWVYDLRTNMPSFGKR-TPFTD---EHLQPFERVYGEDPHGLSPRTEGEW 420 + KN D V D R + +++ ++L +Y + E+ Sbjct: 400 KCKKKNIKDKVLFIDARNYYTVVDRTLNEWSEWQLKNLNAIVWLYRGELDKYQSLL-AEY 458 Query: 421 SFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLP 480 + N R + + K + AD Sbjct: 459 RTTLLSYADETDDANLEK-----ILRKTSKIAKQVELLKEYRETLRAEAKASVDAAD--- 510 Query: 481 EPDVLAAEAMGELVQALSELDALMRELGASDEADLQRQLLEEAFGGVK 528 + E L+E D ++ + L E FG K Sbjct: 511 --KKSKKKTQEEWDTRLAEFDEILNVAK-------EADWLYEKFGDGK 549 >UniRef50_A9NHP1 Type I restriction enzyme, M protein n=9 Tax=cellular organisms RepID=A9NHP1_ACHLI Length = 593 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 103/604 (17%), Positives = 201/604 (33%), Gaps = 105/604 (17%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQE--------------- 46 N + +W + ++L G Y + + LK + +E Sbjct: 13 NIQEKANLIWAIANHL-VGLFKPHEYGKVILPMTVLKRFDDALKETKQEVLSLNKKLNEQ 71 Query: 47 -----------------AEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAV 89 Y + +++L + + L ++ K ++ Sbjct: 72 KTIDAIKDGLICKTTGYDFYNVSPFTFENLLA-DPDNIASNFDTYLKGFSDNVKDIISNF 130 Query: 90 -FHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQ 148 F V T+ + + ++ +S + D G ++E L++K + AG Sbjct: 131 KFEQVLETMHKGNVLYVVIQEFNSKKADMHPDKITSMDMGYIFEELIRKFSESYDEQAGA 190 Query: 149 YFTPRPLIKTIIHLLKPQPREVV---------QDPAAGTAGFLIEADRYVKSQTNDLDDL 199 +FT R +I + LL +E + D A GT+ L D +K Sbjct: 191 HFTSRDIIYLMAELLVANEKEHIKQNGVVKTAYDMAMGTSQMLGCLDEKMKE-------- 242 Query: 200 DGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPK 259 +F + G E P T +A + L+ ++ G+TL D + + Sbjct: 243 ----INFDSKLSLFGQEFNPETYAIAKADMLIKGGNAQ-----NMKFGDTLSDDQFSNYE 293 Query: 260 AHIVATNPPFGSAAG---------------TNITRTFVHPTSNKQLCFMQHIIETLHPG- 303 + +NPPFG + S+ Q+ F+ + ++ L G Sbjct: 294 FDYIISNPPFGIDWKLEEKQVKQEYAKLGYDGRFGPGLPAISDGQMLFLLNGVKKLKEGS 353 Query: 304 GRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 360 GR A++ + LF G G ++IR+ L++ L I++LPT +FY G+ T V +K Sbjct: 354 GRMAIIQNGSSLFTGDAGSGPSEIRKYLIESDLLEAIIQLPTDLFYNTGISTYVWIVSKN 413 Query: 361 TVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGL-------- 412 D Y ++ KR D + + Y + Sbjct: 414 KNKERLGKIQLIDASNCY-VKRRKNIGKKRVDLDDTSIDLITKAYLDFKEVKYEENDLVV 472 Query: 413 SPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKD 472 + F + V ++N L + + S++ +I + Sbjct: 473 ESKIFDNDFFGYTKVTVESPITDENGKPILKKGKLQADSKKRDTELVPLQENIEAFFKDN 532 Query: 473 SIDADSLPEPDVLAAEAMGEL-----------VQALSELDALMRELGASDEADLQRQLLE 521 + +S D + E+ +A S++ A +++L + QL++ Sbjct: 533 VLPYNSSAWMDRSKDKVGYEIPFTRLFYKFIPPKASSDIFAEIKQLEEE-----ETQLMK 587 Query: 522 EAFG 525 E FG Sbjct: 588 ELFG 591 >UniRef50_A0Q1H9 Type I restriction-modification system DNA methylase n=6 Tax=cellular organisms RepID=A0Q1H9_CLONN Length = 705 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 108/545 (19%), Positives = 189/545 (34%), Gaps = 77/545 (14%) Query: 2 NNNDLVAKLWKLCDNLR-DGGVSYQNYVNELASLLFLKMCKETG---------------- 44 + + LW D LR + ++ Y + L+FL+ Sbjct: 3 DIKKIERDLWDAADQLRANSKLTAAEYSMPVLGLIFLRYAYNRFLMVKEEIEENLPSRNG 62 Query: 45 ------------QEAEYLPEGYRWDDLKSRIGQ-EQLQFYRKMLVHLGEDDKKLVQAVFH 91 + A +LPE R+D L S + + + + ++ +KL ++ Sbjct: 63 KKRPITKEDFESKSAIFLPEIARYDYLVSLTEDADIGKSINNAMKAIEKEYEKLKGSLPT 122 Query: 92 NVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFT 151 N TI + + + L+ +S + D FG +YE L K A G++FT Sbjct: 123 NY--TIFDNELLRELLRKFNS----DELRNAKGDVFGRIYEYFLNKFAMTGAQEGGEFFT 176 Query: 152 PRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRA 211 P L++ I+++++P+ +V DPA G+AG ++ +++S +D Sbjct: 177 PISLVQMIVNVIEPEQG-IVLDPACGSAGMFVQTGHFIQSHGASAND----------KVT 225 Query: 212 FIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFG- 270 F G E +LA MN +H +EG + G E L K + V NPPF Sbjct: 226 FYGQEKAELNTKLARMNMAVHGLEGKILEGNT-----FYEDKHELLGKCNYVMANPPFNV 280 Query: 271 -----SAAGTNITRTFVHP--------TSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFE 317 T+ F P SN ++Q+ L+ GRA V+ + Sbjct: 281 DGVDSEKIKTDPRLPFGLPGVNKKSKAVSNANYLWIQYFYSYLNEKGRAGFVMASSATDA 340 Query: 318 GGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWV 377 G D+R L+ + I+ + FY + + + FF K + D V + Sbjct: 341 GHGEKDVRERLIKTNDVDVIISIGNNFFYTRSLPCTLWFFDKNKSEDKK------DKVLM 394 Query: 378 YDLRTNMPSFGKR-TPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENK 436 D R + F++E L+ + + E AE S+ N Sbjct: 395 IDARNIFRKVNRTINDFSEEQLKNITSI----VWLYRGQNERYLKLVAEYINDYSSKANF 450 Query: 437 NTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQA 496 + + + + S L K+ SL E E Sbjct: 451 INKKAILFEDKLHELIDQLERFNSFKLVADENKEIREEYYTSLKELQKDIDNYFVEKETL 510 Query: 497 LSELD 501 E++ Sbjct: 511 NREIE 515 >UniRef50_B0VGE9 Restriction modification system DNA specificity domain:N-6 DNA methylase:Type I restriction-modification system, M subunit n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VGE9_9BACT Length = 837 Score = 231 bits (589), Expect = 5e-59, Method: Composition-based stats. Identities = 103/488 (21%), Positives = 186/488 (38%), Gaps = 68/488 (13%) Query: 7 VAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYL----------PEGYRW 56 K+ D L + V ++ L K + E+ L Y W Sbjct: 7 KKKIDDARDILVGKVPVPSSQVEQITIALIYKFMYDMDNESIELGGKPKYFTGDYAKYAW 66 Query: 57 DDL--KSRIGQEQLQFYRKMLVHLGEDD--KKLVQAVFHNVSTTITEPKQITALVSNMDS 112 + L + G+ ++ Y+ L + + L + +F N +P+ + + +D Sbjct: 67 NRLFDQKLSGEGRVMLYQDALTKIPNNASIPTLFRDIFKNAFLPYRDPETLKLFLKCIDE 126 Query: 113 LDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQ 172 + + GD +E LL ++ AGQ+ TPR +I ++ L+ PQ + + Sbjct: 127 FTYEHSEK------LGDAFEYLLAVLGSQ--GDAGQFRTPRHIIDFMVELIDPQKEDSIL 178 Query: 173 DPAAGTAGFLIEADRYVKSQTNDLDD-----------------------------LDGDT 203 DPA GTAGFLI A +++ + D L Sbjct: 179 DPACGTAGFLISAYKHIIKTNSSNYDKVNDPHTFAMHNTPLDELVIQNGKKYTGDLLTPD 238 Query: 204 QDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIV 263 Q +H+ G ++ RL+L+N LH + I +TL S A+++ Sbjct: 239 QRAFLHKNIKGYDIAFEMVRLSLVNMYLHG-----FNTPQIFEYDTLTSTERWNEYANVI 293 Query: 264 ATNPPFGS-AAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLF-EGGKG 321 NPPF + G F ++ F+ +++E L GRA ++VP+ ++F G Sbjct: 294 LANPPFMTPKGGIRPHHKFTIQAKRSEVLFVDYMLEHLTNNGRAGIIVPEGIIFQSGNAY 353 Query: 322 TDIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDL 380 +R+ L+++ +L ++ LP G+F GVKT++L+ K TD + + Sbjct: 354 KQLRKLLVEENYLVGVISLPAGVFNPYSGVKTSILWIDKA-------LAKKTDKIIFLKI 406 Query: 381 RTNMPSFG-KRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTD 439 + G +R P L + E S + V + +N D Sbjct: 407 NNDGFDLGAQRRPIEANDLPAAFDNAMAYKESVLSGEEYIASDK-NVSLVEKTRLAENGD 465 Query: 440 QHLATSRW 447 +L+ R+ Sbjct: 466 FNLSWERY 473 >UniRef50_C2EIH9 Restriction-modification protein n=1 Tax=Lactobacillus salivarius ATCC 11741 RepID=C2EIH9_9LACO Length = 767 Score = 231 bits (589), Expect = 5e-59, Method: Composition-based stats. Identities = 98/445 (22%), Positives = 189/445 (42%), Gaps = 32/445 (7%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQ-NYVNELASLLFLKMCKETGQEAEY-LPEGYRWDDL 59 + +DL+ + LR+ GV+ +E ++LLFLK+ + +E Y + + + WD Sbjct: 153 SKSDLINLFRVANNKLREAGVNAGVTRFSEFSNLLFLKLVSDLNEERNYNIKDEFLWDTY 212 Query: 60 KSRIGQEQLQFYRK-MLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNG 118 K+ G + + ++ L + + I +P ++ +V +D+L++ Sbjct: 213 KTYEGNALINYINNTVIDGLNKKFDSSEEDNGLFTPLHIKDPIKLKEIVDKLDTLNF--- 269 Query: 119 AHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGT 178 D GD +E +QK T + G+YFTPR +++ + ++KP + + DP GT Sbjct: 270 -KKIDTDIKGDAFEYFIQKYNQ-TNNDLGEYFTPRHIVRFLNDIVKPTYGDKIYDPFCGT 327 Query: 179 AGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD-IEGN 237 G LI A + ++ + LD DT + G E+ T R+A MN +L N Sbjct: 328 GGMLIVAFERILNELEERGKLDEDTLTNLREQTIWGGEI-SDTARIAKMNMILSGDGHSN 386 Query: 238 LDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHII 297 + + + K +IV +N PF + + + HI+ Sbjct: 387 IMQHDSFMNPVS--------DKYNIVISNIPFNMEVTNEQSSLYEPDIKKGNAVAILHIL 438 Query: 298 ETLHPG---GRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYA-QGVKTN 353 + L RAA++VPD VL + D+R++++ L I+ LP+ +F KT+ Sbjct: 439 KALKNNNPYSRAAIIVPDAVLNDKSM-KDLRKNIVSSGQLLGIVSLPSKVFLPYTEAKTS 497 Query: 354 VLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSF-GKRTPFTD-EHLQPFERVYGEDPHG 411 +L F ++ T++++VY ++ + + +R + L F ++ E Sbjct: 498 ILIF-------GSKTNIPTENIFVYKVKNDGYTLTTRRRKISGINDLDNFISIHEEMLET 550 Query: 412 LSPRTEGEWSFNAEETEVADSEENK 436 + + + E+NK Sbjct: 551 NYNKKLNYDNLFYISRKDILDEKNK 575 >UniRef50_Q7X0F3 M.AhdI n=1 Tax=Aeromonas hydrophila RepID=Q7X0F3_AERHY Length = 532 Score = 230 bits (587), Expect = 8e-59, Method: Composition-based stats. Identities = 90/427 (21%), Positives = 157/427 (36%), Gaps = 33/427 (7%) Query: 3 NNDLVAKLWKLCDNLRD-GGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLKS 61 N + L+ + RD G+ + E+ L++ K+ E E + Sbjct: 122 TNRVENLLFDIHSAFRDIDGLHAPEALEEICKLVYAKLFDE---ENAIRTGEVLFQRSGR 178 Query: 62 RIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITAL----VSNMDSLDWYN 117 +E R++ DDK + + + K+ L + + + Sbjct: 179 WSVEECAAEIRRLYDLAINDDKAIFSNKIPSYDRSRGVFKETLLLSSAAIVRATEILQHY 238 Query: 118 GAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAG 177 D G ++ +L +SG GQYFTP+ +I II ++ P RE+V DP G Sbjct: 239 DISSSPVDIKGRAFQNVL---LPAVRSGMGQYFTPKEVIDFIICMMSPNVRELVVDPFCG 295 Query: 178 TAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD-IEG 236 + FL A YV++ D L + G+E R+A+ + LH Sbjct: 296 SGHFLTSALDYVRNSHGKADKLFHEFAFT----RLHGIEKSDRMVRIAMTDMRLHGDGHS 351 Query: 237 NLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVH--------PTSNK 288 N+ A+ + +V TNPPFG + F + Sbjct: 352 NIRCTDALLPFD--NYPDLYRETFDLVVTNPPFGVDLPADALHQFGPFELALDRKTAISL 409 Query: 289 QLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYA- 347 ++ ++ ++ L PGGR A+V+PD VL +R L++ + I+ LP F Sbjct: 410 EIVALERCLQLLKPGGRMAIVIPDGVLSNKNT-QYVRDWLVEHAVIRAIVSLPIETFSPF 468 Query: 348 -QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYG 406 +KT+VL K PN+D + V++ ++ R P + L + Sbjct: 469 GANIKTSVLVLRK---LRPNEDISKLRKVFMSEISNVGYDASGR-PCSSSDLDELLSEFR 524 Query: 407 EDPHGLS 413 + Sbjct: 525 DFVAKEE 531 >UniRef50_B0JHK8 Type I restriction enzyme EcoEI M protein homolog n=2 Tax=Microcystis aeruginosa RepID=B0JHK8_MICAN Length = 677 Score = 230 bits (587), Expect = 8e-59, Method: Composition-based stats. Identities = 96/526 (18%), Positives = 193/526 (36%), Gaps = 61/526 (11%) Query: 3 NNDLVAKLWKLCD-NLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLKS 61 +N+L A + + + G+ +E+ L+ +K+ E + + G + K+ Sbjct: 27 SNNLSAVFEECHNYIYANEGMLKDKIFHEMVKLIIIKLHDEKSAKQ-SVNFGVTASEYKA 85 Query: 62 RIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHG 121 + + +F + L L K + F + + + +P + +V + ++ Sbjct: 86 IVANKSDEFMSR-LSQLFTSIKNHYRGFFTDDTFKL-KPLTLAYIVGRLQYINL----TK 139 Query: 122 KSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGF 181 S D G+ ++ + ++ + G++FTP P+++ + ++ P+P E + DPA G+ GF Sbjct: 140 TSGDIKGEAFQTFVNRH---QRGDRGEFFTPHPIVRLAVEMIDPKPNEKIIDPACGSGGF 196 Query: 182 LIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHG 241 LI+A +V+ + D + + G+E P ++ + G Sbjct: 197 LIQAINHVRQNNPEFD------IASFVQESITGIEFNPDVALSGMIRLVFEGGT-----G 245 Query: 242 GAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITR---------TFVHPTSNK---- 288 I N L D + ++ TNPPFG+ + + SN Sbjct: 246 SEIICTNALIEDEKLNNSFDVILTNPPFGNKGKVEDQKILKSYLLARKWHKSASNGWEVS 305 Query: 289 ---------QLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILR 339 + F++ I+ L GGR A+++PD +L G IR L + + ++ Sbjct: 306 PTVLAGQSPDILFIEKSIKLLRAGGRMAIILPDGLLQNISNG-PIRHWLRSQTKILGVVS 364 Query: 340 LPTGIF--YAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEH 397 +P F Y G+KT++L K + D ++ ++ +T + Sbjct: 365 IPPEAFVPYGTGIKTSLLVVQKLPANH--------DSCFMAQIKKIGYDVKGQTIYKRNE 416 Query: 398 LQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRT 457 R GL + + + E +N+D + Sbjct: 417 SGVIART----KSGLPIVDDDIDDISQSFRSFINGEFAQNSDCIYTVKN--TLLNSRLDA 470 Query: 458 AKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDAL 503 D L+ SI A L E + EA + SE+ + Sbjct: 471 EHYLPNDQKLLEHLKSIGAKPLGEIADILREAADFRLARDSEIRYI 516 >UniRef50_C3RBV5 N-6 DNA methylase n=5 Tax=Bacteroidales RepID=C3RBV5_9BACE Length = 658 Score = 230 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 81/588 (13%), Positives = 176/588 (29%), Gaps = 99/588 (16%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK------------------- 41 M +L +W + + LR+ ++ + + L+ Sbjct: 1 MTAEELGQMIWNVKELLRN-VYDNKDVEDVILPFTLLRRLDCVLVGSEALVATNMKQLEE 59 Query: 42 -----------------ETGQEAEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKK 84 + Y G L + + + ++ L + ++ Sbjct: 60 LGQTSQEDIDNMMPMLMDAAGYKFYNTSGLSLSKLIT-VPADLTNNFKTYLKGFSPNIRE 118 Query: 85 LVQAV--------FHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQ 136 +++ ++ + + + + L+ G ++E +++ Sbjct: 119 ILKNFTGKGENASLSDIFSNLARKNLLLQVTKAF-VLNIDLSPDKVDNHMMGTVFEIVIR 177 Query: 137 KNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVV---------QDPAAGTAGFLIEADR 187 GAGQ++TPR +++ + + + + DP GT G L Sbjct: 178 YAKESVGIGAGQFYTPRDIVRLMTEITLLGQEDKIYQDGKIISVYDPCCGTGGILTLTKD 237 Query: 188 YVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLG 247 ++ + + + G EL T L + ++ E I +G Sbjct: 238 TIEETAKE--------RRVDVTVNLFGQELNDKTYALCKSDIIMKGDEAK-----GIAVG 284 Query: 248 NTLGSDGENLPKAHIVATNPPFGSAAGTN-------------ITRTFVHPTSNKQLCFMQ 294 +TL D K + + NPP+G + S+ QL F Sbjct: 285 DTLLVDEFRDQKFNFMLANPPYGVDWKREYDSVSAEAEDKNSRFAPGLPDKSDGQLLFTL 344 Query: 295 HIIETLHPGG-RAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGV 350 H++ + P G R ++ + LF GG G ++IR+ ++D L I+ LP G+FY G+ Sbjct: 345 HMLHKMDPKGSRVGILSNGSPLFNGGAGSGWSNIRKHMLDNDLLDAIIALPGGLFYGTGI 404 Query: 351 KTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHL-------QPFER 403 T + F + + V + + + R +++ R Sbjct: 405 ATYLWIFDNKKPESHK------NKVLLINAAKDEYVQPMRKNLGMKNVLVSDYGRSEIGR 458 Query: 404 VYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSL 463 +Y + + + F V D + + + Sbjct: 459 IYHAFETCDNAKLMDKDDFFYTYITVERPLRLIYKDVKTKYAALDEKKQSEALANIIALD 518 Query: 464 DISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALMRELGASD 511 DI + A + A+ + + E+ E+ Sbjct: 519 DIDTERTDAEFFAYLESKKIKTTAKLIKDCRTFFGEVSETAPEVHVIP 566 >UniRef50_B9ACI4 Putative uncharacterized protein n=1 Tax=Methanobrevibacter smithii DSM 2375 RepID=B9ACI4_METSM Length = 541 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 81/449 (18%), Positives = 155/449 (34%), Gaps = 57/449 (12%) Query: 90 FHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQY 149 T++E + LV S + G ++E L+++ + ++ AG++ Sbjct: 1 MEKHINTLSEKNILFKLVRKFSETTVDLSPKAVSNHEMGTIFEELIRRFSEQSNEEAGEH 60 Query: 150 FTPRPLIKTIIHLLKPQPR------EVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDT 203 FTPR ++K + LL ++V DPA GT G L Y+++ D+D Sbjct: 61 FTPRDVVKLMTELLFAGEENESGSIKLVYDPACGTGGMLTSCKEYIQNINPDID------ 114 Query: 204 QDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIV 263 G E+ + + L+ + G +TL +D + K + Sbjct: 115 ------IVLYGQEIQDEIYAICKADMLMKGEKAENIKGP----YSTLSNDKLSGEKFDYM 164 Query: 264 ATNPPFGSAAGTN--------------ITRTFVHPTSNKQLCFMQHIIETLH--PGGRAA 307 +NPP+G T+ + S+ QL F+QH+I + R A Sbjct: 165 ISNPPYGRDWETDADEVKSEAEQGYNGRFGAGLPRKSDGQLLFIQHMISKMKTNDKSRIA 224 Query: 308 VVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVAN 364 ++ + LF G ++IR+ + + +L ++ LP +F+ G+ T + T N Sbjct: 225 IITNGSPLFTGDAGSGESNIRKWIFENDYLEALIALPDQLFFNTGIGTYIWILTNKKTPN 284 Query: 365 PNQDKNCTDDVWVYDLRTNMP-----SFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGE 419 V + D R KR ++ + + Y E + Sbjct: 285 RQ------GRVQLIDARKEYAGMRKNLGNKRHTIPEDSITKIIKTYNEFAESDKVKIYNN 338 Query: 420 WSFNAEETEVADSEENKNTDQHLATSRWRKF--SREWIRTAKSDSLDISWLKDKDSIDAD 477 F + V E + + R + + A+S S D ++ Sbjct: 339 EDFGYTKIIV---ERLMQLNYQVTQERLENLYSYSAFKKLAESKSKDPKTKIADETEGKK 395 Query: 478 SLPEPDVLAAEAMGELVQALSELDALMRE 506 E +L +A +++ Sbjct: 396 QQEEIKEALLTIGDDLYTDWDAFEAKVKQ 424 >UniRef50_C8WH94 N-6 DNA methylase n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WH94_EGGLE Length = 691 Score = 229 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 99/596 (16%), Positives = 178/596 (29%), Gaps = 105/596 (17%) Query: 5 DLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK--------------ETGQEAEYL 50 D V ++W + + +R + +Y + L+ + G + Sbjct: 8 DYVNEIWSIANYVR-DVIRPADYNKLILPFAVLRRFECALEPTRAAVSRQAAKGVWDDDD 66 Query: 51 PEGYRWD----------DLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAV-FHNVSTTITE 99 P+ L + + + + ++++Q + E Sbjct: 67 PKYCALSGHCFYNVTSFTLSNLGATKTCDALMAYINGFSVNAREVLQRFEMRQTCEKLDE 126 Query: 100 PKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTI 159 + + + D G S D+YE L+Q+ E A + TP+ + + Sbjct: 127 KGMLYEVCTRFSGFDL--GPETVSDRMMTDIYEHLIQRYGEEISQDAEDFMTPKDVARLA 184 Query: 160 IHLLKPQPRE----------VVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIH 209 LL + D + GT GF+ +A + + Sbjct: 185 TALLFANEDTLLNADNGDIRTLYDGSCGTCGFICDALDQLDEWHDKGHFKSPTKIVP--- 241 Query: 210 RAFIGLELVPGTRRLALMNCLLHDIEGN--------LDHGGAIRLGNTLGSDGENLPKAH 261 G EL T + +L +I G D I LG+TL D + Sbjct: 242 ---YGQELEDATWAMGKAALMLRNIAGGSGDVLDQMTDLSAGIMLGDTLDDDRFEGRTFN 298 Query: 262 IVATNPPFGSAAGTN--------------ITRTFVHPTSNKQLCFMQHIIETLHP----G 303 TNPP+G + + FMQ++ + P G Sbjct: 299 YQLTNPPYGKEWKKEKDAVLEEMGRGFDGRFGAGKPDIDDGSMLFMQNVAAKMAPPKEGG 358 Query: 304 GRAAVVVPDNVLFEGGKGTD---IRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 360 G+AA+V+ + LF G G+ IRR L + + I++LPT IFY G+ T + Sbjct: 359 GKAAIVLSGSPLFNGDAGSGPSGIRRWLFSEDLVDCIVKLPTEIFYRTGIATYIWVLNNH 418 Query: 361 TVANPNQDKNCTDDVWVYDLRTNMPSFG-----KRTPFTDEHLQPFERVYGEDPHGLSPR 415 N V + D + KR ++ R Y + Sbjct: 419 KPENRK------GYVQLIDASEEKTALRKSQGNKRYEIGEDQAAWIVRTYVDGHDHGRSV 472 Query: 416 TEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREW----IRTAKSDSLDISWLKDK 471 +F + + T R + E + + S + L D Sbjct: 473 IVPVENFMY---------------RKVTTQRPLRVVIEPSVDGLDALFTLSKPMEKLSDA 517 Query: 472 DSIDADSLPEPDVLAAEAMGELVQALSELDALMRELGASDEADLQRQLLEEAFGGV 527 S E + A+ E++ A +L + + L + FG Sbjct: 518 SRAAIRSWVEKNEGASLTYSEVLAATEKLHKAIE--KPKPQKAALADALVKVFGRR 571 >UniRef50_A8GYC6 Type I restriction-modification system methyltransferase subunit n=22 Tax=Rickettsia RepID=A8GYC6_RICB8 Length = 517 Score = 227 bits (578), Expect = 8e-58, Method: Composition-based stats. Identities = 94/396 (23%), Positives = 162/396 (40%), Gaps = 46/396 (11%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQ-NYVNELASLLFLKMCKETGQEAEYLPEGYRWDDL 59 ++ +L++ L + LR G+ +E A++LFLK+ E E W+ + Sbjct: 148 VSREELISVFKNLNNLLRSEGLRAGIERFSEFANILFLKLLSENN-------EKSWWNSI 200 Query: 60 KSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGA 119 K++ + + + + + + K VF + +++ + ++ +D L Sbjct: 201 KAQSDDDIIGYINGHV--IEQIKNKYGGDVFTPI--SLSNSHTLRHIIDAIDPLIL---- 252 Query: 120 HGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTA 179 S + + +E L+K T G+YFTP+ +IK I+ + P+ E V DP G+ Sbjct: 253 --SSTNIKDNAFEYFLEK-TRSTCDYLGEYFTPKNIIKLTINYVDPKFGETVYDPFCGSG 309 Query: 180 GFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD-IEGNL 238 GFL EA +Y+K D + H G E+ T R+A MN +LH + Sbjct: 310 GFLTEAFKYIKENNIINTD---EDLKRLRHNTLYGREI-TTTARIAKMNMILHGDGHSGI 365 Query: 239 DHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVH--------------P 284 ++ + K I+ TN PF + Sbjct: 366 QQINSLENSKYIRPTTNQTLKFDIIVTNMPFSQEITKKTIKNGKTVTENHIAHLYYNGIA 425 Query: 285 TSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGI 344 +N + H ++ L GGR A+VVP+ LF +R+ L+ K L T++ LP G Sbjct: 426 KNNGDAACVFHCLQNLREGGRMALVVPERFLFRRDTA-AVRQFLLSKAKLQTVISLPQGT 484 Query: 345 FYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYD 379 F GVKT++L+FT N + W Y+ Sbjct: 485 FLPYTGVKTSILYFTDAHKPNYQRYY------WFYE 514 >UniRef50_Q58617 Uncharacterized adenine-specific methylase MJ1220 n=7 Tax=Euryarchaeota RepID=Y1220_METJA Length = 578 Score = 227 bits (578), Expect = 9e-58, Method: Composition-based stats. Identities = 99/544 (18%), Positives = 182/544 (33%), Gaps = 93/544 (17%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETG----QEAEYLPEGYRW 56 ++ + L+ L + D +R + +Y L LF K + +E + E Sbjct: 82 VSKDKLIGLLKQGADLIR----TQVDYK-VLLLFLFFKAISDKYLLKVEELKKEFEDLDE 136 Query: 57 DDLKSRIGQEQLQFYR--------------------KMLVHLGEDDKKLVQAVFH---NV 93 +D+ +E L+ Y L + E +K+ + + Sbjct: 137 EDIYVLANEEILELYDVEGKKLYVWHEVANNPEDFINALNKIVEMNKEKLSGLDELIKRT 196 Query: 94 STTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153 + +V ++ +L S D GD YE L A G+ +TP Sbjct: 197 GLPTLFENENRHIVQHLINLFSRADFSEASYDILGDAYEWTLNYFAPTKAKE-GEVYTPI 255 Query: 154 PLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFI 213 + K I HL++P+ EV+ DPA G+ LIE R+ S + + Sbjct: 256 EVSKLIAHLVEPKDDEVILDPACGSGSMLIEQYRFAGSN---------------PNIVLV 300 Query: 214 GLELVPGTRRLALMNCLLHDI---EGNLDHGGAIRLGNT--LGSDGENLPKAHIVATNPP 268 G E T LA +N +LH I + + G ++ + + KA V NPP Sbjct: 301 GQERNDVTAVLAKLNFILHGINLKDAKVFIGDSLLNPKFESFIXEVKGTGKADKVVANPP 360 Query: 269 FGS-----------AAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFE 317 + +I ++ ++Q I +A +V+ LF Sbjct: 361 WNQDGYDENTLKVNEKYKDIYMYGFPNKNSADWAWVQLINYYTEK--KAGIVLDSGALFR 418 Query: 318 GGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWV 377 GGK IR+ +D + ++ LP +FY +L K + Sbjct: 419 GGKEKTIRKRFVDDDLIEAVVLLPEKLFYNCPAPGIILILNKNKPEERK------GKILF 472 Query: 378 YDLRTNM---PSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEE 434 + P K +DE+++ + Y E +V D EE Sbjct: 473 INASNEYIKHPEVKKLNKLSDENIEKIAKAYKEFKD------------VDGFCKVVDIEE 520 Query: 435 NKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELV 494 + D +L S + E + +D+ + ++ + + E + + E+ Sbjct: 521 IRKNDYNLNVSLYISPIEED------EDVDLGEVYEELNKLHNEYLEKFEVVKGYLEEIN 574 Query: 495 QALS 498 + Sbjct: 575 GLIK 578 >UniRef50_C7QWT4 Type III restriction protein res subunit n=1 Tax=Cyanothece sp. PCC 8802 RepID=C7QWT4_CYAP0 Length = 1005 Score = 226 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 97/440 (22%), Positives = 164/440 (37%), Gaps = 38/440 (8%) Query: 57 DDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWY 116 L ++ +F D + + N+ T+ L+ LD Sbjct: 510 KYLNRLPNGKKDEFLIIDFWENEFDRDPSDEVISQNLPITVKLFNTRLRLLG--YYLDNQ 567 Query: 117 NGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAA 176 + +++D GD+YE LL K + GQ+ TPR +I+ ++ ++ P+P E + D AA Sbjct: 568 ESSDEQNQDVKGDLYEYLLGKLNISGR--NGQFRTPRHIIRLMVEMVDPKPNERIGDLAA 625 Query: 177 GTAGFLIEADRYVKS--------------QTNDLDDLDGDTQDFQIHRAFIGLELVP--G 220 GT GFL+ + +Y+ + D L + +F AF + Sbjct: 626 GTCGFLVNSYQYILEKFTSPEILLDEMGNKHPIGDLLTPEESEFLEKEAFTAYDNDSGMT 685 Query: 221 TRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPF-GSAAGTNITR 279 R+ MN +LH I+ +TL + ++ + NPPF G +I Sbjct: 686 MLRIGSMNLMLHGIK-----YPRFFYQDTLSKEFKDEKSLDVALMNPPFKGKMDEKDINP 740 Query: 280 TFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGK-GTDIRRDLMDKCHLHTIL 338 +L F+ I+ L GGR V+VPD VLF K DIR+ L+++ L ++ Sbjct: 741 YLPTKCKKTELLFLYQILRVLEMGGRCGVIVPDGVLFGSSKQHQDIRQKLIEENRLDGVV 800 Query: 339 RLPTGIFYA-QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSF-GKRTPFTDE 396 +P+G+F GV T +L FTKG TD +W YD+ + S KR P + Sbjct: 801 SMPSGVFKPYAGVSTAILLFTKG---------ATTDRIWFYDMEHDGFSLDDKRQPIEEN 851 Query: 397 HLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIR 456 + + E+ + + R+ Sbjct: 852 DIPDILDCWRNRFDNGFSALRESMKAELSAKLQPLKEKRLQLQEEIHRLRFEDAIASEDE 911 Query: 457 TAKSDSLDISWLKDKDSIDA 476 L+ + K + Sbjct: 912 ETPRQVLESAEETLKVLEEE 931 >UniRef50_O30381 N6 adenine methylation (M) subunit homolog n=4 Tax=Mycoplasma pulmonis RepID=O30381_MYCPU Length = 520 Score = 225 bits (573), Expect = 3e-57, Method: Composition-based stats. Identities = 90/550 (16%), Positives = 187/550 (34%), Gaps = 112/550 (20%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQ---------------- 45 N+ +L+A + K+CD LR + Y + + LF K E + Sbjct: 3 NSKELIAVVKKICDQLR-SKMEVTEYRDYVMGFLFFKYLSEQSEKNFEEFKERVDYIKYS 61 Query: 46 --------------------EAEYLPEGYRWDDLKSRIG---------QEQLQFYRKMLV 76 + +L Y + ++ + +E + Sbjct: 62 EFDENHEQFKKIKEIIIQNDDDFFLAYKYSFQNVVDMMNQGKNVIPTIEESFNKIESINS 121 Query: 77 HLGEDDKKLVQAVFHNVSTTITEPKQITA--------LVSNMDSLDWYNGAHGKSRDDFG 128 L ++ K+ + +F N+ + I ++ +++L+ D FG Sbjct: 122 ELNDEKKEFFKDLFTNIDFSNKNLGNIDEEKEKTIQLIIEEINTLNL----SMDEVDHFG 177 Query: 129 DMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPRE--VVQDPAAGTAGFLIEAD 186 + YE LL + A++ AG+++TP + + ++ ++ + DPA G+ LI+ Sbjct: 178 NTYEYLLSEFASDAGKKAGEFYTPSKVAELLVKIVSHGKNKINKAYDPACGSGSLLIKLA 237 Query: 187 RYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEG---NLDHGGA 243 V G E+ T LA MN +L + +L G Sbjct: 238 NKVGKYNK-----------------IYGQEVKTATYNLARMNFILRGVPFSKLDLRSGDT 280 Query: 244 IRLGNTLGSDGENLPKAHIVATNPPFGSAAGT----NITRTFVH-----PTSNKQLCFMQ 294 + + + + NPPF + R + P S F+Q Sbjct: 281 LINPLHIEEE----DSFDCIVANPPFSQKWNPTQELSKDRRYNPYPSLAPKSYADFAFLQ 336 Query: 295 HIIETL-HPGGRAAVVVPDNVLFEGG--KGTDIRRDLMDKCHLHTILRLPTGIFYAQGVK 351 H++ + G A V +L DIR+ ++DK ++ TI+ LP +FY G++ Sbjct: 337 HMLFHVNKDNGIIASVFSLGILSRISPKAEEDIRKYIIDKNYIDTIIFLPPNLFYNTGIE 396 Query: 352 TNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHG 411 + ++ K N + +++ + + K+ +DE++ + E Sbjct: 397 SCIIVARKNKPTNDKR-------IFMINATKEFQNAKKQNTLSDENINRIFSAWKEKREE 449 Query: 412 LSPRTEGEWSFNAEETEVAD---------SEENKNTDQHLATSRWRKFSREWIRTAKSDS 462 + + + EE+++ D S K + E ++ Sbjct: 450 ENFSKYISYEDIVKNEYSLSMRFYDLDNFDEESEDIDIDFVESEIVKINEELLKYENEFK 509 Query: 463 LDISWLKDKD 472 +++ +K Sbjct: 510 KNLNEFLNKK 519 >UniRef50_A8UNU7 N-6 DNA methylase n=1 Tax=Flavobacteriales bacterium ALC-1 RepID=A8UNU7_9FLAO Length = 603 Score = 225 bits (573), Expect = 3e-57, Method: Composition-based stats. Identities = 100/611 (16%), Positives = 191/611 (31%), Gaps = 121/611 (19%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK---ETGQE------------ 46 + ++ +W + D++ Y + + + L+ E ++ Sbjct: 7 SLQPIINFIWTVADDVLINKYLENQYQDVILPMTVLRRLDLALEKSKDKVLKTHNEFKSK 66 Query: 47 -----------------AEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAV 89 A Y Y L F L E+ + ++ Sbjct: 67 MDNLDGLLTSETHGSGLAFYNTSPYTMKKLLDDPKNIDSNFL-DYLNGYSENVQDIISKF 125 Query: 90 -FHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQ 148 F N T+ +L+ + S G M+E L+++ +T + AG+ Sbjct: 126 KFRNQLETLENGGITFSLIEKFCNPKVELRPEKISPMAMGYMFEDLIRRFNEKTNAAAGR 185 Query: 149 YFTPRPLIKTIIHLLKPQPREVV-------QDPAAGTAGFLIEADRYVKSQTNDLDDLDG 201 +FTPR +I+ + HL+ +E + DP AG+ L ++ +Y + ++ Sbjct: 186 HFTPREIIELMTHLVYLPVKEKIQNGTFLVYDPCAGSGAMLTQSKKYATNPDGEIKSKAT 245 Query: 202 DTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLP-KA 260 G E + LL + + I+ G+TL G K Sbjct: 246 --------FHLYGQENTGEMYATCKSDMLLKNEDP-----DKIKFGSTLSEYGFEPNLKF 292 Query: 261 HIVATNPPFGSAAGTNIT---------------------RTFV---------HPTSNKQL 290 + + TNPP+G++ ++ + F +++ QL Sbjct: 293 NFMLTNPPYGTSWKEDLKSLTNSSNKKQDIVDTRFNLKIKNFKGELEEQTLASRSNDGQL 352 Query: 291 CFMQHIIETLHP----GGRAAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTG 343 FM H++ + G R A V + LF G + IR+ +++ L I++LP Sbjct: 353 MFMLHMLSKMKDPKDGGSRIASVHNGSALFTGDAGSGESGIRQYILENDLLECIIQLPND 412 Query: 344 IFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPS--FGKRTPFTDEHLQPF 401 +FY G+ T + + + + M KR H+ Sbjct: 413 MFYNTGIATYIWILSNVKEEKRKGKVQLINASSKDEFSKKMRKPLGDKRVELNPNHILDI 472 Query: 402 ERVYGEDPHGLSPRTEGEWSFNAEETEVADSEE------------NKNTDQHLATSRWRK 449 + +Y + + F + V E N +D+ L S Sbjct: 473 QNLYFDFEENQYSKIFNNEDFGYYQITVHQPERDEDGKIVTDKKGNPKSDKDLKDSENVP 532 Query: 450 --------FSREWIRTAKSDSLDISWLK-------DKDSIDADSLPEPDVLAAEAMGELV 494 F RE I A D +K K D L +++ E + Sbjct: 533 MTEDIDTYFKREVIPYAPDAWYDKKKMKVGYNIPLTKHFYKYDELRNLNIITNEILSLEK 592 Query: 495 QALSELDALMR 505 + L ++ Sbjct: 593 ETDGLLKEIID 603 >UniRef50_C3QS31 Type I restriction-modification system n=2 Tax=Bacteroides RepID=C3QS31_9BACE Length = 490 Score = 225 bits (572), Expect = 5e-57, Method: Composition-based stats. Identities = 95/513 (18%), Positives = 167/513 (32%), Gaps = 68/513 (13%) Query: 14 CDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAE-------------YLPEGYRWDDL- 59 + G +S + + +LLFLK E + + E +D L Sbjct: 12 ARQILGGTISADQCRDYVLALLFLKSASEYYKSNNSFQQDDNSPALRLLVSERSSFDYLC 71 Query: 60 KSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPK---------QITALVSNM 110 K E + L L + + + + N + ++ L+ Sbjct: 72 KELDSPELGRLINMALYELEQVNALVTEGYEINKAIDFESNILGDMNARSIKLRELLLLF 131 Query: 111 DSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLK-PQPRE 169 + N D GD+Y LL A E TP ++ I L+ + Sbjct: 132 QEIRLTNATGQLI--DVGDLYNQLLYIFAEEAGKKINNVLTPTEVVSLITKLIDGDRKNA 189 Query: 170 VVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNC 229 + DPA+G+ L+E + + + + G E+ L MN Sbjct: 190 CLCDPASGSGTLLVEVGKKMGIRGTE----------------LYGQEVNWNLYALTKMNL 233 Query: 230 LLHDIEGNLD-HGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAG--------TNITRT 280 +L+ +G G ++ L D L K IV + PPF + Sbjct: 234 MLNGFKGATFLWGDSLSNPKLL--DHGGLRKFDIVVSVPPFADKWAAEEAYSDFYKRFKY 291 Query: 281 FVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRL 340 + P S ++ HI+ +L G+A VVVP VLF + IR +++ L ++ L Sbjct: 292 GIPPKSQVTWAYISHILASLRNDGQAVVVVPVGVLFR-NTESKIREQIIEHNLLEAVIEL 350 Query: 341 PTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQP 400 P +FY + T +L F K + D R S +D+ L+ Sbjct: 351 PPNLFYGAAISTAILVFRK---------ERMRTQTLFVDARKGYISNKGLCKLSDKMLEQ 401 Query: 401 FERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKS 460 Y + G E + +A +E ++ L ++ + E Sbjct: 402 LSNTYKKFLAGEEMGREKKGCS----FYIATQDEIRHNKYDLKVIKYVEDKIERKEIDVK 457 Query: 461 DSLD-ISWLKDKDSIDADSLPEPDVLAAEAMGE 492 +L I L+++ + E E Sbjct: 458 VALQRIDELEERLKCIDKQFKDCAWRLRELTKE 490 >UniRef50_A8YEM4 Genome sequencing data, contig C300 n=4 Tax=Bacteria RepID=A8YEM4_MICAE Length = 1193 Score = 225 bits (572), Expect = 5e-57, Method: Composition-based stats. Identities = 98/550 (17%), Positives = 200/550 (36%), Gaps = 73/550 (13%) Query: 1 MNNNDLVAKLWKLCDNLRDGG-VSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDL 59 + ++L + + +L GG ++ +EL L+F K+ E +A + E Y + Sbjct: 180 VTEDELTRRFKQAHQSLWGGGELNPSEAFDELDKLIFCKIWDEK--KARKVGEPYDFQIF 237 Query: 60 KSRIGQEQL---------QFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNM 110 ++ + + + L E+ ++ VF + P+++ +V + Sbjct: 238 SVAPKADEKEEERKQRENKQLSERIKALYEEGRRADAEVFKDDI--RLSPEKLRTVVGYL 295 Query: 111 DSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREV 170 +S++ D G +E + + GQYFTPR ++K I+ +L Q + Sbjct: 296 ESINL----GETDLDSKGRAFETFMGSFF---RGDFGQYFTPRQIVKFIVDVLPIQHNSL 348 Query: 171 VQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHR----------AFIGLELVPG 220 V D + G+ GFL+ A V+++ ++ G+E+ Sbjct: 349 VLDTSCGSGGFLLHALEKVRTEADEYYPNYQTNPKEYNQHYQHWHNFAQSNLFGIEINEQ 408 Query: 221 TRRLALMNCLLH-DIEGNLDHGGAIRLGNTL----GSDGENLPKAHIVATNPPFGS---- 271 R+A MN ++H D N+ +R L + G + + TNPPFGS Sbjct: 409 IARVAKMNMIIHDDGHTNVIAADGLRDSEDLIKRTENKGFTYNRFDFIITNPPFGSVIKQ 468 Query: 272 ----------------AAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVL 315 +RT + + ++ F++ L GG A+VVPD +L Sbjct: 469 TEQAYISQYSFAMKAVDWLNPKSRTTERDSQSTEVLFLEQCHRFLKEGGYLAMVVPDGIL 528 Query: 316 FEGGKGTDIRRDLMDKCHLHTILRLPTGIF--YAQGVKTNVLFFTKGTVANPNQDKNCT- 372 +R + +K + ++ +P F GVK++VLF K + A + Sbjct: 529 TNSSL-QYVREGIEEKYRIVAVVSMPQTAFSATGAGVKSSVLFLKKHSQAVTESIQQAKL 587 Query: 373 ---DDVW----VYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAE 425 D + L + + KR + + G+ E + S AE Sbjct: 588 ALQDQIKQGNDYLKLLDKIENNKKRHLKELRGFDNAQNLSGKALTDSEAYKEWKKSVTAE 647 Query: 426 ETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVL 485 +++ + + L+ ++ + ++ I + + + + E D + Sbjct: 648 Y-----NDQIEALKESLS-DQYAEEKQKVIEDYPIFMAIAEDIGYDATGKSTNNNELDFI 701 Query: 486 AAEAMGELVQ 495 + + Sbjct: 702 GKKLKEFIDS 711 >UniRef50_UPI00017F5863 N-6 DNA methylase n=1 Tax=Clostridium difficile ATCC 43255 RepID=UPI00017F5863 Length = 675 Score = 224 bits (571), Expect = 6e-57, Method: Composition-based stats. Identities = 100/580 (17%), Positives = 197/580 (33%), Gaps = 98/580 (16%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK------------ETGQEAEY 49 NN + +A LW + ++LR G ++Y + L+ ++ +E ++ Sbjct: 5 NNFNHIAFLWNIAESLR-GTYKEEDYRKVMLPLIVIRRFDCLLDDYDREIVKSVYKEYDF 63 Query: 50 LPEG-------------------------YRWDDLKSRIGQEQLQFYRKMLVHLGEDDKK 84 LPE + W L + + + L K+ Sbjct: 64 LPEEEKDELVIVDLKENHNIDLQFYNVSDFTWKKLLD-DSENIKSNFEEYLNGFSNSVKE 122 Query: 85 LVQAV-FHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETK 143 ++ F + + + ++ A++S M +D + + S ++ G +YE +L++ + Sbjct: 123 IIGKFKFKDEIAQLDKKDKLYAVLSKMYEVDLH--INSVSNNEMGYIYEEMLRRFTENSA 180 Query: 144 SGAGQYFTPRPLIKTIIHLLKPQPRE---------VVQDPAAGTAGFLIEADRYVKSQTN 194 AG+ +TPR +I+ + +L + D GT G L A+ YV+ Sbjct: 181 --AGEQYTPREVIRLCMEMLFMGKENFLTEEGKVISIADFCCGTGGMLSIAEDYVEKVNP 238 Query: 195 DLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDG 254 G EL+ + + + ++ IRLGNTL D Sbjct: 239 SAI------------VNVYGQELLDESFAICQADMIMKGQNP-----DNIRLGNTLTQDR 281 Query: 255 ENLPKAHIVATNPPFGSAAG--------------TNITRTFVHPTSNKQLCFMQHIIETL 300 + K + +NPPFG S+ L F+Q++I + Sbjct: 282 FSGEKIRFLISNPPFGVTWKDEEKKVKEEADLGFDGRFGAGTPRVSDGSLLFLQNMISKM 341 Query: 301 ---HPGGRAAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNV 354 G R A++ + LF G ++IR+ +++K L I+ LPT +FY G+ T + Sbjct: 342 YDDEEGSRIAIIFNGSPLFTGDAGSGESNIRKWIIEKDLLEGIIALPTDMFYNTGIATYI 401 Query: 355 LFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSP 414 T + Y L KR + E ++ + +Y + Sbjct: 402 WVLTNKKEDKRKGKIQLVNASEYYQLMRK-SLGNKRKEISLEQIEEIKEIYERFEESENS 460 Query: 415 RTEGEWSFNAEETEVADSEENKNTDQHLATS--RWRKFSREWIRTAKSDSLDISWLKDKD 472 + F + E + K + ++I + S D ++ Sbjct: 461 KIFDNEGFGYRK---VTIERPLKLSFRVNEEAIENVKNTTQFINLSVSKKKDEEVKVKEE 517 Query: 473 SIDADSLPEPDVLAAEAMGELVQALSELDALMRELGASDE 512 + + L E D +++L + + Sbjct: 518 AEGRVKQDKLLKLLESFDSEFEYMKR--DKFIKDLKSKSK 555 >UniRef50_A6EJ97 Type I restriction-modification system methyltransferase subunit n=1 Tax=Pedobacter sp. BAL39 RepID=A6EJ97_9SPHI Length = 633 Score = 224 bits (571), Expect = 7e-57, Method: Composition-based stats. Identities = 90/512 (17%), Positives = 165/512 (32%), Gaps = 67/512 (13%) Query: 27 YVNELASLLFLKMCKETGQEAEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLV 86 Y E+ + ++ + Y + ++ LK Q + + +++ Sbjct: 29 YKGEIPPSILSSKLEKITGQKFYNTSPFTFEKLKGAP-DSIAQDLVSYINGFSPNVRRIF 87 Query: 87 QAV-FHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSG 145 + F + + + +VS ++ + S D G ++E L+++ Sbjct: 88 EYFDFEKEIFAMNDANILYLIVSEFAKVNLH--PSLVSNRDMGLIFENLIRRFNELANET 145 Query: 146 AGQYFTPRPLIKTIIHLLKPQPRE---------VVQDPAAGTAGFLIEADRYVKSQTNDL 196 AG +FTPR +IK +++LL + + DP GT G L EA Y+K +D+ Sbjct: 146 AGDHFTPREIIKLMVNLLFVDDDKFLRDKYHLRKILDPTCGTGGMLSEAKNYLKQNNSDI 205 Query: 197 DDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNL-----DHGGAIRLGNTLG 251 L G E A + L+ + G I+ G+TL Sbjct: 206 ILLT------------YGQEYNKRAYATAASDLLIKGRSSDKVGKYEQAEGEIKFGDTLT 253 Query: 252 SDGENLPKAHIVATNPPFGSAAGT----------NITRTFVHPTSNKQLCFMQHIIETLH 301 D + NPPFG + ++ L F+QH+I Sbjct: 254 EDQFEDDTFDYLIANPPFGVDWKKQKPQIDRDKTGRFEAGLPRVNDGALLFLQHMISKFE 313 Query: 302 P--------GGRAAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGIFYAQGV 350 P G R A+V + +F GG +DIR+ +++ L I+ LP +FY G+ Sbjct: 314 PYEPKNKKFGSRLAIVFSGSPMFSGGAGSGESDIRKWIIENDWLEGIIALPEQMFYNTGI 373 Query: 351 KTNVLFFTKGTVANPNQDKNCTDDVWVY-DLRTNMPSFGKR-----------TPFTDEHL 398 T + T N D Y +R + S ++ + Sbjct: 374 NTYIWVLTNRKSKNRKGKIQLFDAREFYIQMRKSQGSKRRKIGEGEVDDGIIHVMEPNQI 433 Query: 399 QPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTA 458 YG+ + + + F E + R F Sbjct: 434 AEIITEYGQFDNTTNAKLFDNEDFGFTR---VTVERPLRLKYQMTAERKLAFLDACPHLL 490 Query: 459 KSDSLDISWLKDKDSID-ADSLPEPDVLAAEA 489 L + +D L + ++ + Sbjct: 491 DDVQTIDKKLGQEILMDWNKVLKDIKKISEQK 522 >UniRef50_Q160U6 Type I restriction-modification system DNA methylase, putative n=12 Tax=Proteobacteria RepID=Q160U6_ROSDO Length = 677 Score = 223 bits (569), Expect = 9e-57, Method: Composition-based stats. Identities = 94/496 (18%), Positives = 166/496 (33%), Gaps = 87/496 (17%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK-----------ETGQE---- 46 N L +WK D+L G + + + L+ + ET + Sbjct: 7 KNTSLADFIWKNADDLW-GDFRHTEFGKIILPFTLLRRLECVLAPTREEVRETVKNLGDS 65 Query: 47 --------------AEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAV-FH 91 Y Y DL+S + ++ + + + F Sbjct: 66 GIDMDVILRQQTGFPFYNTSNY---DLRSLGATRTRANLEDYISQFSDNARVIFEQFDFA 122 Query: 92 NVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFT 151 N + + + N ++D + ++YE L+++ E A + T Sbjct: 123 NTIARMDRAGVLYKICQNFAAIDLH--PDTVPERTMSNVYEHLIRRFGAEVNEAAEDFMT 180 Query: 152 PRPLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDG 201 PR ++ I LL P + DP GT GFL + +V++ + Sbjct: 181 PRDVVHLAIELLLDPDDQLFIENPGLIRTLYDPTCGTGGFLSDGMEHVRNLQDRYSIAPV 240 Query: 202 DTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN--LDHGGAIRLGNTLGSDGENLPK 259 G EL P T + L LL +E + D I LG+TL +D K Sbjct: 241 IIP--------YGQELEPETHAVCLAGMLLKTLETDPGRDLSKNIALGSTLSADKHRPEK 292 Query: 260 AHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETL------------------- 300 H +NPPFG + +K+ F L Sbjct: 293 FHYCVSNPPFGKKWEKDQAD---VTREHKEQGFEGRFGPKLPRVSDGSMLFLLHLLSKLE 349 Query: 301 ---HPGGRAAVVVPDNVLFEGGKGT---DIRRDLMDKCHLHTILRLPTGIFYAQGVKTNV 354 + GGRAA+++ + LF G G +IRR L+++ + I+ LPT IF+ G+ T + Sbjct: 350 SPENGGGRAAIILSGSPLFNGNAGQGESEIRRHLLEQDVVEAIIALPTEIFFRTGIGTYI 409 Query: 355 LFFTKGTVANPNQDKNCTDDVWVYD-LRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLS 413 + A+ + +Y+ +R + KR ++ + ++Y + Sbjct: 410 WILSNDKPAHRKGKVQLINATEMYEPMRKS--EGNKRRRVGEQQTRDIVQMYADFEATKQ 467 Query: 414 PRTEGEWSFNAEETEV 429 F +V Sbjct: 468 SLILSAPDFGYRRIKV 483 >UniRef50_C8WMW5 N-6 DNA methylase n=3 Tax=Bacteria RepID=C8WMW5_EGGLE Length = 799 Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 78/469 (16%), Positives = 141/469 (30%), Gaps = 86/469 (18%) Query: 11 WKLCDNLRDGGVSYQNYVNELASLLFLKMCKE---------------------------- 42 W + D LR G Y + + +K + Sbjct: 26 WNVADTLR-GPYKPHEYGLVILPMTVIKRFHDCLLPTHGKVVEAAEEYKNFAVKDGFLRE 84 Query: 43 TGQEAEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVS---TTITE 99 Y + ++ LK+ ++ L E+ + ++ + + + Sbjct: 85 ASGYPFYNTSKFTFETLKADPA-NIEDNFKDYLNGFSENVQDILARMDFFRQIERLSDPD 143 Query: 100 PKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTI 159 + +VS+ + D G ++E L+Q+ + AG +FT R ++ + Sbjct: 144 APLLYQVVSDFCAERADMSPEKIKPVDMGYIFENLIQRFSESYDEDAGAHFTSRDIVYLM 203 Query: 160 IHLL---------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHR 210 LL + + V D GT+ L + ++ +D Sbjct: 204 TDLLIAADPHVFDGDRISKTVYDQTMGTSQMLSCTEERLRQLDDDA------------RV 251 Query: 211 AFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFG 270 G E P T +A + L+ + +R G+TL SD K +NPPFG Sbjct: 252 TCFGQEFNPFTFGIAKASALIRGEDD-----ANMRFGDTLSSDKFADYKFDYCISNPPFG 306 Query: 271 SAAGTN-------------ITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFE 317 + + Q+ FM + I L G +V + L++ Sbjct: 307 GDWKLEETAVRKEAKLTGSRFHVGLPARGDGQMLFMLNGIAKLKDEGVMVIVQDASPLYK 366 Query: 318 G---GKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDD 374 G IR +++ L I+RL FY G+ T + KG Sbjct: 367 GKPESGEDKIRSYILENDWLDAIIRLSGDAFYNTGLVTFLWVINKGKPE------KRAGK 420 Query: 375 VWVYDLR-----TNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEG 418 V + D N P KR T + + + Sbjct: 421 VQLIDASGCCVPRNRPIGKKRNDITKFCRDLVLEAFSDFETKDYSSSSE 469 >UniRef50_C8P6G6 Type I restriction-modification n=2 Tax=Bacteria RepID=C8P6G6_9LACO Length = 699 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 89/541 (16%), Positives = 169/541 (31%), Gaps = 96/541 (17%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK---ETGQEA---------- 47 ++ +W + + LR G Y + + + ++ + E ++ Sbjct: 13 VDITSEANFIWSIANKLR-GTYMPDKYGDVIIPMTIIRRFECALEPTKDKVLAQYEAMPT 71 Query: 48 -------------EYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVF-HNV 93 Y + +L + ++ L D +++++ + + Sbjct: 72 YPARAMYKISGFQFYNTSKFDLQELCN-DPDNINSNFKSYLAGFSADVQEILRNLDIESN 130 Query: 94 STTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153 + + + +V LD G ++E L+ + AGQ++T R Sbjct: 131 IDKMDKGGCLYNVVKAFSELDL--SVAKFDSIKMGYIFENLIARFYQNV--DAGQFYTGR 186 Query: 154 PLIKTII---------HLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQ 204 +I+ + +L+ V D A GT G L A Y+K +D Sbjct: 187 DIIRLCVSLLLAEGSEDILEDNKVVTVLDQACGTGGMLSTAYTYLKHLNPTVD------- 239 Query: 205 DFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVA 264 G EL+ + + L L+ D + + +TL D K V Sbjct: 240 -----VHLFGQELMGQSYAVGLAEMLIKD-----QNIDNFKHADTLKEDCFPDQKMRFVL 289 Query: 265 TNPPFGSAAGTN--------------------ITRTFVHPTSNKQLCFMQHIIETLHPGG 304 NPPFG+ G + T++ QL F+Q + L G Sbjct: 290 ENPPFGTPWGGKDAKQGQEESVKEEYLKGESSRWPAGLPKTNDAQLLFIQSALSKLDDNG 349 Query: 305 RAAVVVPDNVLFEGGK---GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGT 361 RAA++ + LF G + +RR L++ +L TI+ +PT +FY + T + +K Sbjct: 350 RAAIIENGSSLFTGNTASGESQVRRWLLENDYLDTIVAMPTDLFYNTELATYIWILSKNK 409 Query: 362 VANPNQDKNCTDDVWVYDLRTNMPSFG-----KRTPFTDEHLQPFERVYGEDPHGLSPRT 416 V D K+ F+ E+ + ++Y + + Sbjct: 410 SQKRK------GKVQFIDATNIYEKLRKPLGKKKNEFSKENREQITKLYTDFVENDISQI 463 Query: 417 EGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDA 476 F E V + R K + +K Sbjct: 464 HDNTEFIYREYTVMQP---LQRSYAITEQRIEKMLPNLNSFFDPVKFNELQESNKKLSAR 520 Query: 477 D 477 D Sbjct: 521 D 521 >UniRef50_A9DR80 Restriction/modification methyltransferase n=2 Tax=Bacteria RepID=A9DR80_9FLAO Length = 737 Score = 220 bits (561), Expect = 8e-56, Method: Composition-based stats. Identities = 93/585 (15%), Positives = 187/585 (31%), Gaps = 116/585 (19%) Query: 3 NNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKE-------------------- 42 +N +V+ +W + D++ Y + + L+ Sbjct: 6 HNQIVSFIWSIADDVLRDDFVRGKYRDIILPFTVLRRLDALLVPTKEDVLKGYKFLKENK 65 Query: 43 ---------TGQEAEYLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNV 93 + G+ + + ++ + ++ + N+ Sbjct: 66 IDDLSGLTHQSGYPFFNTSGFTFSNSSLFDSNHPYTALTNDPANIDSNLEEYLDGFSENI 125 Query: 94 STTITEPKQITAL------------VSNMDSLDWYNGAHGKSRD-----------DFGDM 130 I + L + + S + G + Sbjct: 126 QQIIDRFEIRKQLPKLKENGLTPLLIEKLASKEINLSPVEIKNTKGEVLPPLTNLGMGYV 185 Query: 131 YEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREV-------VQDPAAGTAGFLI 183 +E L++K E AG++FTPR +I+ + HL+ ++ + D A G+ G L Sbjct: 186 FEELIRKFNEENNEEAGEHFTPREIIQLMTHLIFLPIKDKLKVAQYSIYDSACGSGGMLT 245 Query: 184 EADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA 243 EA++Y K T + + G E+ P T + + L+ + Sbjct: 246 EAEKYAKRITKNKTSF-----------SLYGQEVNPETWAVCNSDMLIKG-----EKDYH 289 Query: 244 IRLGNTLGSDGENLPKAHIVATNPPFGSAAGTN------------------ITRTFVHPT 285 I G+TL +D + + +NPP+G A + +T + Sbjct: 290 IAYGSTLSNDSFQFKEFDFMLSNPPYGKAWKKDEDSIVIERGKTNELIKDPRFQTGLPKI 349 Query: 286 SNKQLCFMQHIIETLHPG----GRAAVVVPDNVLFEGGKGT---DIRRDLMDKCHLHTIL 338 S+ QL F+ +++ + G R A V + LF G G +IRR L++ + I+ Sbjct: 350 SDGQLLFLSNMVHKMKKGTELGSRIASVHNGSSLFTGNAGQGESEIRRYLIESDLVECIV 409 Query: 339 RLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYD-LRTNMPSFGKRTPFTDEH 397 LP IFY G+ T + + + + + LR N+ K H Sbjct: 410 ALPEKIFYNTGIPTYIWILSNRKEKRRQGKIQLINALELSTPLRRNLGE--KNCEMQPSH 467 Query: 398 LQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWR-KFSREWIR 456 ++ E +Y + F + + R++ +F+ E I Sbjct: 468 IKQIEDLYLNFKETNISKVFDNEDFGYYDVTIER------------PLRYKSQFTNEAIE 515 Query: 457 TAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELD 501 + + +K + D+L E + EL ++ Sbjct: 516 NLRYLNTIADEMKWMYAQFGDNLYEGISKEIKQKTELWLKDEDIK 560 >UniRef50_B1A4M3 Type I restriction-modification system M-subunit-like protein n=2 Tax=Acidithiobacillus caldus RepID=B1A4M3_9GAMM Length = 856 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 109/625 (17%), Positives = 183/625 (29%), Gaps = 134/625 (21%) Query: 2 NNNDLVAKLWKLCDNLRD-GGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLK 60 N + L+ LRD + + ++ +LF+KM E + Y D + Sbjct: 116 NRKEFQDLLFVCHSILRDVHKMDPGRAFDTISKILFIKMYVERSGQHGTFTTDYL--DRR 173 Query: 61 SRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAH 120 + + L + K +F + +V ++ D Sbjct: 174 AAVRLPTDPAVHDGLFEQTKAYYKA-DDLFAASDKLDISEETFRRIVKQLERFDL----S 228 Query: 121 GKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAG 180 D G +E L + GQ+FTPRP+++ ++ LL P+ E + DPA+G+ G Sbjct: 229 KTGDDIKGLAFEKFLG---TTFRGELGQFFTPRPVVEFMVDLLNPREGERICDPASGSGG 285 Query: 181 FLIEADRYVKSQTNDLDDLDGDTQDFQIH------------------------------- 209 FLI A +V++Q D + +I Sbjct: 286 FLIRAFEHVRAQIVADIQRQKDEERARIEALGLPEEEEERQIEEAFSRLNRELLPSDDNN 345 Query: 210 ------------RAFIGLELVPGTRRLALMNCLLHD-IEGNLDHGGAIRLGNTLGSDGEN 256 + G + P R A MN ++H G + + + L +G Sbjct: 346 KPIDTRVGRLAWQCIYGTDAEPRAARTAKMNMIMHGDGHGGIHYHDGL-----LDINGIF 400 Query: 257 LPKAHIVATNPPFGSAAGTNIT-------------------------------------- 278 + +V TNPPFGS G + Sbjct: 401 GGRFDVVLTNPPFGSNVGRDQKVGGSDETRVPKDEAYLARCREGGYGPAWEESHQSLLAA 460 Query: 279 --------RTFVHPTSNK----QLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRR 326 F K +L F++ + L PGGR +V+PD L +RR Sbjct: 461 AAARKPILDLFEIGKGKKNRPTELIFVERCLNLLKPGGRMGIVLPDGNLNNPSLAW-LRR 519 Query: 327 DLMDKCHLHTILRLPTGIFY--AQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNM 384 K L ++ LP F VK +++F K T A Q + Sbjct: 520 WAEGKAKLLAVVSLPEATFRSSNATVKASLVFLRKFTEAEAAQWEAAWAQ--------AH 571 Query: 385 PSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLAT 444 R D+ Y + T Sbjct: 572 AELDARF---DQQRDEAHAAYAPRIVCGDDAEVQRLLDELAAL------GIQRTLLRWQH 622 Query: 445 SRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALM 504 + R+ T ++ + + E A A+ + + DAL Sbjct: 623 GEAPAYPRQARPTVQNKPAWTGEAAKEHKEHKKAAAELKKQADAALAAVRKRS---DALF 679 Query: 505 RELGASDEADLQRQLLEEAFGGVKE 529 EL A +A + + V+E Sbjct: 680 SELKAKYKAIDEAH-TAALWARVRE 703 >UniRef50_B0JQT9 Type I restriction enzyme EcoEI M protein n=1 Tax=Microcystis aeruginosa NIES-843 RepID=B0JQT9_MICAN Length = 588 Score = 218 bits (555), Expect = 4e-55, Method: Composition-based stats. Identities = 89/436 (20%), Positives = 150/436 (34%), Gaps = 45/436 (10%) Query: 2 NNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLKS 61 N DL + L G+ ++ +EL +L K +E P + L Sbjct: 166 NKGDLEIAFRECRKELAKEGLIAESAFDELTKILTCKFNEEKRDAEGLAPNRFTSSWL-- 223 Query: 62 RIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHG 121 +G L ++M D K+ I + + +V ++ Y Sbjct: 224 -LGSGPLAALQQMFT----DAKQTFNVFPTGTQIQIRSNETVEKIVRELEPFGLYGFKTP 278 Query: 122 KS-----RDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAA 176 D G +YE L + GQY TPR L++ ++ + + E V D + Sbjct: 279 LGLAGAGGDVVGSVYEAFL---TGTLRGDLGQYLTPRQLVEFMVEIADIKIGEKVLDLSC 335 Query: 177 GTAGFLIEADRYVKSQTNDLDDLDGDTQD---FQIHRAFIGLELVPGTRRLALMNCLLHD 233 G+ GFLI A V+ + LD + + G+E+ P L +N +LH Sbjct: 336 GSGGFLIRAFINVRKKIRFLDSSQDEKDHLVSNLVTNNLWGIEINPRLATLCRINMILHG 395 Query: 234 IEG-NLDHGGAIRLG----------NTLGSDGENLPKAHIVATNPPFG--SAAGTNITRT 280 ++ G +IR + L + N ++ NPPF + R Sbjct: 396 DGYEHIYTGDSIREDVFENTDGRRTDFLNIEQNNAAMFDVILINPPFNIPYEDSATLNRY 455 Query: 281 FV---HPTSNKQLCFMQHIIETLHPG-GRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHT 336 ++ ++ I L P GR V++P V G T++R + + H+H Sbjct: 456 YLGRGKAAQGSDYLVLERAIRLLKPETGRLLVILPHGVAS-GVSETEVRNFVKSRTHIHG 514 Query: 337 ILRLPTGIFYA---QGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPF 393 + LP G F +T VL+ K T N + + V YD+ + Sbjct: 515 CISLPVGSFKPFGGSNARTCVLYLKKTTGDNKKRFLAQAEHVG-YDITSKYY-----RET 568 Query: 394 TDEHLQPFERVYGEDP 409 L Y Sbjct: 569 DLNDLPVIAEAYHRVK 584 >UniRef50_C7IHQ9 N-6 DNA methylase n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IHQ9_9CLOT Length = 737 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 101/548 (18%), Positives = 183/548 (33%), Gaps = 72/548 (13%) Query: 1 MNNNDLVAKLWKLCDNLRDGGV-SYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDL 59 ++ DL + D L GG + +EL ++F K+ E P Y + Sbjct: 177 VSEQDLTRIFRQAHDALWAGGKRNPSEAFDELDKVIFCKLWDERTLRKNGEP--YNFQVF 234 Query: 60 KSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGA 119 + LQ + + K VF + K++ +V + ++ Sbjct: 235 TGEATDKLLQRIK----SIYNKGKAKDPEVFRDDI--RLNAKELETVVGYLAKVNL---- 284 Query: 120 HGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTA 179 D G +E + + GQYFTPR ++K I+ L VV D + G+ Sbjct: 285 TATDLDSKGKAFETFMGSFF---RGEFGQYFTPRNIVKFIVESLPITNESVVLDTSCGSG 341 Query: 180 GFLIEADRYVKSQTN---------DLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL 230 GFL+ A V++ + + + G+E+ R A MN + Sbjct: 342 GFLLYALDKVRNIADQKAEEGYFSKDSKEHWNFWHDFAEKRLYGVEISESIARTAKMNMI 401 Query: 231 LH-DIEGNLDHGGAIRLGNTLG----SDGENLPKAHIVATNPPFGSAAGTNITRTF---- 281 +H D N+ + + L + G + + TNPPFGS + R Sbjct: 402 IHDDGHTNVVAFDGLEGIDKLSETTKNPGFKKNRFDFIITNPPFGSTIKYSEHRYIEDFE 461 Query: 282 --------------------VHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKG 321 + ++ F++ + LH GG A+V+PD +L Sbjct: 462 LGCKSIDWIEAKLKNVDLNSPRDNQSSEILFIERCHQYLHDGGILAIVIPDGILTNSSM- 520 Query: 322 TDIRRDLMDKCHLHTILRLPTGIFY--AQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYD 379 +R + +K + ++ +P F GVK++VLF K + + Sbjct: 521 QYVRDWIEEKYRIIAVVSMPQTAFTANGAGVKSSVLFLYKLSEKDTAT------------ 568 Query: 380 LRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWS-FNAEETEVADSEENKNT 438 +R S +T E+ + E L + A + + N Sbjct: 569 IRAIKKSLQDKTFDKPEYGAAITALEQEKQTILKRGDVTKQEMEEAFVSHIEALRAQGNH 628 Query: 439 DQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDV-LAAEAMGELVQAL 497 + + + + KS+S SW K+ + + L+ E G + L Sbjct: 629 TKDIERQLTKGHKEKVKEYEKSESFQ-SWKKETTEEFNERISNIKENLSDEYTGLVKDKL 687 Query: 498 SELDALMR 505 + M Sbjct: 688 NNYPIFMA 695 >UniRef50_Q6ZE83 Type I restriction-modification system M subunit n=1 Tax=Synechocystis sp. PCC 6803 RepID=Q6ZE83_SYNY3 Length = 499 Score = 216 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 73/357 (20%), Positives = 133/357 (37%), Gaps = 50/357 (14%) Query: 110 MDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPRE 169 M +D G ++E L+++ E AG++FTPR ++K + L+ + Sbjct: 1 MQDIDGNEVLSALDNHSMGTIFEELIRRFNEENNDEAGEHFTPRDVVKLMADLIFLSIGD 60 Query: 170 VV-------QDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTR 222 ++ D A GT G L A+ + + Q ++ G E+ P T Sbjct: 61 LIESGTYLVYDGACGTGGMLTVAEERLAELAQN--------QGKEVSIHLFGQEVQPETY 112 Query: 223 RLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTF- 281 ++ + LL + ++ G+TL SD + + +NPP+G + T++ R Sbjct: 113 AISKADLLLKGEGAEAE---NMKYGSTLSSDAFPSQEFDFMLSNPPYGKSWKTDLERLGG 169 Query: 282 ---------------------VHPTSNKQLCFMQHIIETLHP----GGRAAVVVPDNVLF 316 + +S+ QL F+ + + + G R A V + LF Sbjct: 170 KGDIKDPRFVTRHGDEADYKMITRSSDGQLMFLVNKLAKMKHNTRLGSRIAEVHNGSSLF 229 Query: 317 EGGK---GTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTD 373 G ++IRR +++ L TI+ LP IFY G+ T + + D Sbjct: 230 TGDAGQGESNIRRWIIENDWLETIIALPENIFYNTGIATYIWLLSNRKNEERRGKVQLID 289 Query: 374 DV-WVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEV 429 W LR N+ K ++E +Q + + +F + V Sbjct: 290 GTEWYVPLRRNLGK--KNCELSEEQIQTIVDLVVNPRETEKSKIFPNQAFGYWKVTV 344 >UniRef50_B3QZM0 Type I restriction-modification system methyltransferase subunit n=1 Tax=Candidatus Phytoplasma mali AT RepID=B3QZM0_PHYMT Length = 925 Score = 216 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 95/397 (23%), Positives = 176/397 (44%), Gaps = 50/397 (12%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQ-NYVNELASLLFLKMCKETGQEAEYLPEGYRWDDL 59 ++ +L++ K+ + L++ G+S +NE ++LFLK+ E Q + + E Y W++ Sbjct: 140 ISRENLISIFKKINNLLQEVGISAGIQRINEFCNILFLKLFSE--QNIKNINELYLWENF 197 Query: 60 KSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGA 119 K+ L+F++K + + E KK VF + T I + ++ +D L + Sbjct: 198 KNTPDNSLLEFFKKNI--IPEFQKKYSSDVF--IQTEIKNSSVLRKIIQLLDPLKLID-- 251 Query: 120 HGKSRDDFGDMYEGLLQKNANETKSG--AGQYFTPRPLIKTIIHLLKPQPREVVQDPAAG 177 D GD +E + + G+YFTPR ++K + ++ P+ E + DP G Sbjct: 252 --LETDIKGDAFEYFISVYSGGHGQKTDLGEYFTPRHIVKNTVKIVNPKIGETILDPFCG 309 Query: 178 TAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD-IEG 236 T GFLIE +++ Q + D G E+ T RLA MN +L Sbjct: 310 TGGFLIEVFKHIHQQISLDDK---TLLKKLQKETIFGQEI-TSTSRLAKMNMILAGDGHN 365 Query: 237 NLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHI 296 N+ ++++ N K ++ TN PFG + K+ +++ Sbjct: 366 NIIQCDSLKVTN--------KQKYDLIITNIPFG---------------NQKEQLYIETC 402 Query: 297 IETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYA-QGVKTNVL 355 + L GGR A+++PD +L K +R+ L + + I+ +P G+F VKT++L Sbjct: 403 LNFLKKGGRMAIIIPDGILSN-QKNLFLRKKLYNNFDIK-IISMPMGMFEPYTSVKTSIL 460 Query: 356 FFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTP 392 AN ++ + +Y + ++ S K+ Sbjct: 461 I------ANSKKENQTNSFIKIYKIESDGFSLDKKRK 491 >UniRef50_A6L5S5 Type I restriction-modification system M subunit n=1 Tax=Bacteroides vulgatus ATCC 8482 RepID=A6L5S5_BACV8 Length = 771 Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats. Identities = 78/516 (15%), Positives = 167/516 (32%), Gaps = 119/516 (23%) Query: 4 NDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCK---------------------- 41 L+A +W + D++ Y + + ++ L+ Sbjct: 2 EQLIALIWNIADDVLRDVFLRGQYRDVILPMVVLRRLDALLEPTKVAVEQEYKSQIEAGL 61 Query: 42 ----------ETGQEAEYLPEGYRWDDLKSRIGQE---QLQFYRKMLVHLGEDDKKLVQA 88 + + Y + + LK++ + + L E+ K +++ Sbjct: 62 ADNLDEEALKDESGQTYYNLSKWTLNRLKNQSSDNNDINYTNFIEYLNGYSENVKDVLKN 121 Query: 89 V-FHNVSTTITEPKQITALVSNMDSLDWYNGAH-----------GKSRDDFGDMYEGLLQ 136 F+ + + ++ +++ + S G ++E LL+ Sbjct: 122 FEFYAKVKKLADNDRLISIIERITDPRLNLTDRPATDPDGLPLPAVSNLQMGTLFEELLR 181 Query: 137 KNANETKSGAGQYFTPRPLIKTIIHLLKPQPRE------VVQDPAAGTAGFLIEADRYVK 190 + E AG++FTPR +I+ + ++ ++ + DPA G+ G L E Y+ Sbjct: 182 RFNEENNEEAGEHFTPRDVIELLAKMVFEPVKDNLPKIISLYDPACGSGGMLTEGRDYLL 241 Query: 191 SQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTL 250 + + + G E+ P T + + ++ ++ H GNT+ Sbjct: 242 NMGVTPNAI-----------QMYGTEVNPETYAICKSDFIIKGVDPEGMHR-----GNTI 285 Query: 251 GSDGENLPKAHIVATNPPFGSAAGTNITRTF--------------------------VHP 284 + + + + TNPP+G + + + + Sbjct: 286 TENHFHNKQFGYMLTNPPYGKSWKEDKKKIYHDKDLLDARFNLKLTNFIGEEEIVDSTPR 345 Query: 285 TSNKQLCFMQHIIETLH------PGGRAAVVVPDNVLFEGGK---GTDIRR-DLMDKCHL 334 TS+ QL F+ ++ + G R A + + LF G ++IRR L++ + Sbjct: 346 TSDGQLLFILEEVDKMKSLEAQPQGSRVASIHNGSSLFTGDAGSGESNIRRYYLIENNLV 405 Query: 335 HTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGK----- 389 I++LP IFY G+ T V + + V + D K Sbjct: 406 DAIVQLPNNIFYNTGISTYVWLLSNHKQDH---------KVQLIDASKAFDKLRKNLGSR 456 Query: 390 RTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAE 425 T + R+Y + S + Sbjct: 457 NCEVTPKDADDIVRIYMNRTECEANDDVRISSKIFD 492 >UniRef50_Q4HS21 Type I restriction-modification system, M subunit, putative n=3 Tax=Campylobacterales RepID=Q4HS21_CAMUP Length = 695 Score = 215 bits (548), Expect = 3e-54, Method: Composition-based stats. Identities = 102/503 (20%), Positives = 194/503 (38%), Gaps = 59/503 (11%) Query: 1 MNNNDLVAKLWKLCDNLRDGGV-SYQNYVNELASLLFLKMCKETGQ-EAEYLPEGYRWDD 58 + +L A L K+ + L +GG + +E + ++F KM E + + +Y E Y + Sbjct: 173 ITPGELEALLKKIHNYLWNGGKRNPAEAFSEFSKIIFTKMMDEKAKTDIKYKLEHYEFQ- 231 Query: 59 LKSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNG 118 + E K + L E KK VF N I + +I LV N++ + G Sbjct: 232 ---KNRDEDKFALEKRIKGLYEKYKKKDSNVFDNA--LILDADEIKFLVENLEGI----G 282 Query: 119 AHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGT 178 D G++++ L+ K AGQ+FTP +++ ++ ++V DP+ G+ Sbjct: 283 LSKIELDIKGEIFQNFLKDFF---KGKAGQFFTPFNVVRFVVGCFDITQNDLVLDPSCGS 339 Query: 179 AGFLIEADRYVKSQTNDLDDLDGDTQ-DFQIHRAFIGLELVPGTRRLALMNCLLH-DIEG 236 GFL++ +Y++ ++ L + G+E+ G + A MN ++H D Sbjct: 340 GGFLLQTLQYMQEKSKKLKKKAQKRFWHSFAEKNLYGIEINGGISQTAKMNMIIHDDGHT 399 Query: 237 NLDHGGAIRLGNTL--GSDGENLPKAHIVATNPPFGSAA--GTNITRTFVHPTS------ 286 N+ + ++ H + TNPPFGS+ F S Sbjct: 400 NVITADGLDSFENFIRKNNKFQKNTFHFIFTNPPFGSSIPASKPYFEDFSFAKSEVHFID 459 Query: 287 --------------NKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKC 332 ++ F++ E L GG A V+PD +L ++R L+++ Sbjct: 460 KIIDKKSPKDLSGQKSEILFLERYFEFLKEGGIVACVLPDGILTNSSL-QNVRDYLLERF 518 Query: 333 HLHTILRLPTGIF--YAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKR 390 +L LP F Y GVK+++L K + + + + Sbjct: 519 YLLASFSLPQHTFSNYGAGVKSSILVLKKKDKKAIKAFLDKKEAI--------------Q 564 Query: 391 TPFTDEHLQPFERVYGEDPHGLSP-RTEGEWSFNAEETEVADSEENKNTDQHLATSRWRK 449 T +H + E ++P + E + ++ ++ E+ + +A +R Sbjct: 565 NAITQKHKDEILTLRDELKALITPLQKELKALEKMQDKDLKTQEQIATLKEQIANARETY 624 Query: 450 FSREWIRTAKSDSLDISWLKDKD 472 +E + K + LK + Sbjct: 625 RYKEELVRDKICAEVSEKLKQLE 647 >UniRef50_C7N817 Type I restriction-modification system methyltransferase subunit n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N817_SLAHD Length = 654 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 83/459 (18%), Positives = 161/459 (35%), Gaps = 77/459 (16%) Query: 9 KLWKLCD--NLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLKSRIGQE 66 +++ C + G+ Q EL ++F K+ E + R ++ Sbjct: 174 FVFRTCHNHIYANDGLQKQQAFFELLKVIFCKIEDERNLPHPLE----FYATSDERGSRD 229 Query: 67 QLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDD 126 +K + + E KK +F + P+ + +VS + N + D Sbjct: 230 GQLTVQKRVGAIFEKVKKRHGKIFDEDAVIELTPRSLAYIVSELQGYSLLN----TNIDI 285 Query: 127 FGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEAD 186 G YE ++ + GQ+FTPR ++K ++ +L P E V D + GT GF++ A Sbjct: 286 KGKAYEEIVG---ANLRGDRGQFFTPRNVMKMVVEMLDPTDEERVADTSCGTGGFIVMAM 342 Query: 187 RYVKSQTN---------------DLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLL 231 +V + D + R F G ++ + MN ++ Sbjct: 343 THVMQRIEAELVDEFGPREDWGVDETMAFQERVSDVASRNFFGFDIDRDLAKATKMNMVM 402 Query: 232 -HDIEGNLDHGGAIRLGNTLGSD------------------GENLPKAHIVATNPPFGSA 272 +D GN+ ++ + D ++L ++ TNPPFG+ Sbjct: 403 NNDGSGNIMQTNSLLPPHEWDMDFKSRLAKAIGRDPKSLVNWKSLAMFDVIVTNPPFGTK 462 Query: 273 A---------GTNITRTFVHPTSNK--------------QLCFMQHIIETLHPGGRAAVV 309 + + + ++ F++ + L GGR +V Sbjct: 463 IPIKDTSILGQFELAHIWECDKTTGKWTMTDRLQSSVPPEILFVERCTQFLVEGGRMGIV 522 Query: 310 VPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQ-GVKTNVLFFTKGTVANPN-- 366 +PD++L G G IR L+ + L + F GV+T+VL K + A + Sbjct: 523 LPDSILGSPGLG-YIREWLIANHRIVASLDMHQDTFQPHNGVQTSVLILQKKSQAEKDAE 581 Query: 367 -QDKNCTDDVWVYDLRTNMPSFGKRTPF--TDEHLQPFE 402 + ++ D + ++ + P D+ Sbjct: 582 AKTRHVADYDIFMAMVEHVGHDKRGNPIFVRDDDGNEVL 620 >UniRef50_C6QR93 N-6 DNA methylase n=1 Tax=Geobacillus sp. Y4.1MC1 RepID=C6QR93_9BACI Length = 643 Score = 213 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 96/505 (19%), Positives = 181/505 (35%), Gaps = 60/505 (11%) Query: 1 MNNNDLVAKLWKLCDNLRDGGVSYQNYVN-ELASLLFLKMCKETGQEAEYLPEGYRWDDL 59 M+ + + + +L + + + + EL L L E + E L ++L Sbjct: 1 MSRDKALQFIHELENQFNKKEIEAEKGLTVELLKLHTLFFAMENEKYGEKLTNIITREEL 60 Query: 60 KSRIGQEQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGA 119 K+R G ++ + L E + + VF N + E + LV ++ Sbjct: 61 KNRRGN--VKETIQSLYRTLESIEPSLSGVFLNDTFKNIEETTLYKLVVLLERYGLT-KT 117 Query: 120 HGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTA 179 ++ + +E L+++ +K G FTP L + +I LKP V D AG A Sbjct: 118 EYQNNEATTVFFETLIKELLASSK---GYDFTPDGLSQLMIQALKPITG-SVYDGTAGIA 173 Query: 180 GFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI---EG 236 L++A RY K + D + G E+ + +N ++ I +G Sbjct: 174 NILVDAYRYAKGKGKD--------------ISVYGQEINEELYVIGKLNLFVNHILPEQG 219 Query: 237 NLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAG------TNITRTF----VHPTS 286 ++ G IR L + L + + N PFG + F + S Sbjct: 220 DMKLGDTIRDPKWL--ENGRLMQFDYIMMNFPFGLRDWGYEFAINDPYHRFELYALPSKS 277 Query: 287 NKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFY 346 F+ H + +L+ G+AA++VP L G IR L+ + +I+ LP +F Sbjct: 278 QGDYSFILHALASLNQEGKAALIVPFGTLVRGAAERKIRSILLKDDVIESIVSLPNNLFS 337 Query: 347 AQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYG 406 G++ +L K ++ V + + + T +H+Q Sbjct: 338 GTGIQVALLLLNKHKPSHKK------GKVQFINAEGDYERTRTQKYLTSKHVQKIIET-- 389 Query: 407 EDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDIS 466 + + + + +E + L S + F + T I Sbjct: 390 ----------LEAYENKEKYSRIVTIDEIAENNWDLNPSLY--FIHVELDTEFGK---IV 434 Query: 467 WLKDKDSIDADSLPEPDVLAAEAMG 491 + K K +A++L + +A G Sbjct: 435 FNKKKYEGEAENLVQIGDIAEVIRG 459 >UniRef50_B4VWN4 N-6 DNA Methylase superfamily n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VWN4_9CYAN Length = 396 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 60/270 (22%), Positives = 103/270 (38%), Gaps = 26/270 (9%) Query: 162 LLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGT 221 +L+P V DP G G +++++++ + +DD+ + G E T Sbjct: 1 MLEPYQG-RVFDPCCGLGGMFVQSEKFIAAHQGRIDDI-----------SIYGQESNETT 48 Query: 222 RRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAG------- 274 +L MN + I+G+ + +D KA V NPPF + Sbjct: 49 YKLCRMNLAIRWIDGSNIKWN---PEGSFLNDAHKDLKADFVIANPPFNDSDWGGELLRK 105 Query: 275 TNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLF-EGGKGTDIRRDLMDKCH 333 R V P N ++QH + L P G A V+ + L G +IR+ L++ Sbjct: 106 DGRWRYGVPPVGNANFAWVQHFLYHLAPTGAAGFVLSNGSLSLNTGGEGEIRQALVEADL 165 Query: 334 LHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTP- 392 + I+ LPT +FY G+ + F ++ N N+++ +V D +R Sbjct: 166 VDCIVMLPTQLFYNTGIPACLWFLSRYKNGNKNRNRQ--GEVLFIDASELGYMVNRRNRA 223 Query: 393 FTDEHLQPFERVYGEDPHGLSPRTEGEWSF 422 FT+E + Y SP Sbjct: 224 FTEEDIGKIAGTYHTWKRKPSPSPSQREEK 253 >UniRef50_D0I0N8 Type I restriction-modification system M subunit putative n=3 Tax=Bacteria RepID=D0I0N8_VIBCH Length = 684 Score = 211 bits (537), Expect = 5e-53, Method: Composition-based stats. Identities = 91/493 (18%), Positives = 156/493 (31%), Gaps = 104/493 (21%) Query: 11 WKLCDNLRDG--GVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLKSRIGQEQL 68 ++ C N G G+ + L+F KM E + W + E Sbjct: 198 FRRCHNFIHGNEGMPKDAAFWQFLYLIFSKMYDERIGNR----DREFWASPTEQFDDEGR 253 Query: 69 QFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFG 128 + R + L E KK +F + + +VS + D+ D G Sbjct: 254 KKIRARINPLFEKVKKAYPEIFAGNEEITLSDRALAFMVSELAKYDF----TRTEMDAKG 309 Query: 129 DMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRY 188 Y+ ++ + + GQYFTPR IK I+ ++ PQP E V DP+ GT GFL + + Sbjct: 310 AAYQEVVG---DNLRGDRGQYFTPRGAIKLIVEMMAPQPHEKVLDPSCGTGGFLEQTLSF 366 Query: 189 VKSQTNDLDDLD------------GDTQDFQIHRAFIGLELVPGTRRLALMNCLLH-DIE 235 + Q + + + G + P R + MN ++ + Sbjct: 367 INKQLREKEAISLAAETTEEFISIQQQIKEFAENNLFGCDFDPFLCRASQMNVVMASNAM 426 Query: 236 GNLDHGGAIRLGN-------------TLGSDGENLPKAHIVATNPPFGSA---------- 272 N+ H ++ + +G ++ TNPPFGS Sbjct: 427 ANIYHMNSLEYPHGHLKGVDPAKKTIPVGDSSGKDGSVDVILTNPPFGSDIPVTDKQILE 486 Query: 273 -------AGTNITRTFVHPTSNK-----QLCFMQHIIETLHPGGRAAVVVPDNVLFEGGK 320 F K ++ F++ ++ L GGR +V+PD +L G Sbjct: 487 QYDLAYVWERTENGGFRKTERRKDAVSPEILFIERCVQWLKQGGRMGIVLPDGILGNPGD 546 Query: 321 GTDIRRDLMDKCHLHTILRLPTGIF---YAQGVKTNVLFFTKGTVANPNQDK---NCTDD 374 IR LM +C + + LP F + T++LF K T + Sbjct: 547 E-YIRWWLMQECWVLGCVDLPVESFIVEANVNILTSLLFLKKKTDTEKDAIAIGGEPEYP 605 Query: 375 VWVYDLRTNMP------------------------------------SFGKRTPFTDEHL 398 V++ +R+ D+ L Sbjct: 606 VFMAVAEKVGFDRRGNTLYERHPDGEEKVIEEEVEERIRINGHNVVRKLKRRSKILDDDL 665 Query: 399 QPFERVYGEDPHG 411 + + E Sbjct: 666 PKIAKAWKEFRAN 678 >UniRef50_C5DB05 N-6 DNA methylase n=1 Tax=Geobacillus sp. WCH70 RepID=C5DB05_GEOSW Length = 629 Score = 211 bits (536), Expect = 7e-53, Method: Composition-based stats. Identities = 98/519 (18%), Positives = 194/519 (37%), Gaps = 57/519 (10%) Query: 6 LVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLKSRIGQ 65 + +++ D LR G NY L + LK +E +P+ R ++ + Sbjct: 3 IEKMMFEHIDLLR-GETETVNYKLILLPVYSLKFLEEKN----LIPDEMRIKEILNHESN 57 Query: 66 EQLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRD 125 Q R ED+ ++ V+ + + + L+ ++++ S Sbjct: 58 IADQLQRS--FQYVEDNFHALKGVYTIFPENVVSNRTLFQLLLKINAMTL-------SVK 108 Query: 126 DFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEA 185 ++ ++ E LL + G+ ++P+ + + I LL P D AG G L+ A Sbjct: 109 EWAELAEELLYHSYEWEGVRGGENYSPKSINQLGIELLNPISG-TFYDGTAGFGGTLVSA 167 Query: 186 DRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD-IEGNLDHGGAI 244 Y K +L G E+ + LA +N LLHD ++ L G A+ Sbjct: 168 LEYSKQNNGELK--------------LYGQEIDHTSWALAKLNLLLHDKLDAELIQGDAL 213 Query: 245 RLGNTLGSDGENLPKAHIVATNPPFG---------SAAGTNITRTFVHPTSNKQLCFMQH 295 + DG+ L K + + + P+ N + P + F+ H Sbjct: 214 LNPAFI--DGDRLKKFNFIMMDFPWVELRNHYETLKQDKYNRFIYGIPPRRSADFAFIMH 271 Query: 296 IIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVL 355 + +L G+A +VVP LF G IR++L+ + ++ LP G++ G++TN+L Sbjct: 272 TLASLESDGKAVLVVPGRTLFASGMEQSIRQNLIAADVIEAVIALPAGLYKHTGIQTNLL 331 Query: 356 FFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKR-TPFTDEHLQPFERVYGEDPHGLSP 414 K + + + + + T +++ Y +GL Sbjct: 332 ILNKNKSLDRK------GRILFINAENEFQTKQRYLKVLTKDNIDKIISTYR---NGLEI 382 Query: 415 RTEGEWSFNAEETEVADSEENKNTDQHLATSRWRKFSREWIRTAKSDSLDISWLKDKDSI 474 ++ + E E + T++ + T + K ++++ +K SL+I LK Sbjct: 383 EQFSKFVSSNEIEEANLFYKKYLTEKVIDTDFFGKV--QFVKESKEYSLNIYPLKKLTEK 440 Query: 475 DADSLPEPDVLAAEAMGELV----QALSELDALMRELGA 509 + E GE + + + L+ +L + Sbjct: 441 IFRGMNVSSNSIEEGTGEFKLVKLSDVQDGEILLDDLSS 479 >UniRef50_C8MCW8 Predicted protein n=1 Tax=Staphylococcus aureus A9635 RepID=C8MCW8_STAAU Length = 625 Score = 211 bits (536), Expect = 7e-53, Method: Composition-based stats. Identities = 84/457 (18%), Positives = 163/457 (35%), Gaps = 65/457 (14%) Query: 9 KLWKLCDN--LRDGGVSYQNYVNELASLLFLKMCKETGQEAEYLPEGYRWDDLKSRIGQE 66 K++++C N + G NE+ +LF+K+ E + G + + + Sbjct: 170 KIFEICHNHVYANDGHLKDKVFNEMLKILFIKLMDERNHTSRIADFGITEQEYDEILNHK 229 Query: 67 QLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDD 126 + F + + +L K Q +F+ + + +V M + D SRD Sbjct: 230 ENDF-KVRINNLFNKAKNNYQDIFNPNEKINLKLSTLAFVVGQMQNFDL----SHSSRDV 284 Query: 127 FGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEAD 186 G ++ + + G++FTP P+I+ + ++ P+ E + DPA GT GFL+ A Sbjct: 285 KGLAFQKFV---YAHQRGDRGEFFTPDPIIELAVKMINPKIDETILDPACGTGGFLVAAL 341 Query: 187 RYVKSQTNDLDDLD----GDTQDFQIHRAFIGLELVPGTRRLALMNCLL----HDIEGNL 238 ++V+ DL + R G++ P +++ M +L H Sbjct: 342 KHVEESIIDLKAERPIDFEKAKTDYALRKLRGIDFNPDLVKVSKMRMILEDDGHTGIFQA 401 Query: 239 DHGGAIRLGNTLG----SDGENLPKAHIVATNPPFGSAA---GTNITRTFVHPT------ 285 + +R ++ N I+ TNPPFG +I R + Sbjct: 402 NSLDTLREIEIQALKSGANNINENSVDIILTNPPFGRKGTITDKDILRQYELGHQWVKNN 461 Query: 286 ------------SNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCH 333 + F++ + L G+ A+V+PD+VL G K +R ++ + Sbjct: 462 DSYENSHKVLDDQVPDILFIERCYQFLKNKGKMAIVLPDSVL-TGPKLQYVRNYILKRFK 520 Query: 334 LHTILRLPTGIF--YAQGVKTNVLFFTKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKR- 390 + ++ LP F + VK ++L K + + ++ D+ K Sbjct: 521 VVGVVSLPYETFIPHGANVKASILLLQKLDSKTMEELNTDGYESFMVDIEKIGYQGNKNG 580 Query: 391 ------------------TPFTDEHLQPFERVYGEDP 409 DE + + E Sbjct: 581 TLIYKIDEKGQYILDENGNKILDEEISEALEGWTEYE 617 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.309 0.128 0.312 Lambda K H 0.267 0.0393 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,642,808,678 Number of Sequences: 3077464 Number of extensions: 103868789 Number of successful extensions: 374130 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 1506 Number of HSP's successfully gapped in prelim test: 2931 Number of HSP's that attempted gapping in prelim test: 359530 Number of HSP's gapped (non-prelim): 7232 length of query: 529 length of database: 1,040,396,356 effective HSP length: 133 effective length of query: 396 effective length of database: 631,093,644 effective search space: 249913083024 effective search space used: 249913083024 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 95 (41.3 bits)