28 d1vfra_ Probab=100.00  E-value=6.1e-38  Score=224.50  Aligned_columns=171  Identities=16%

Q ss_pred             CCHHHHHHHCCEEECC-CCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf             9569999826200065-799879899999999998387888898629999749789999999998664112353577887
Q batch____         1 MDALELLINRRSASRL-AEPAPTGEQLQNILRAGMRAPDHKSMQPWHFFVIEGEGRERFSAVLEQGAIAAGSDDKAIDKA   79 (183)
Q Consensus         1 M~~~~~i~~RrSvR~f-~~~~v~~e~l~~il~aa~~aPs~~n~qp~~~~vv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~   79 (183)
                      +.++|+|++|||+|+| .++|||+|+|++|+++|++|||++|.|||+|++|++++.++.+.....         ......
T Consensus         2 ~~lle~i~~RrSvR~f~~~~pv~~e~i~~il~aa~~APS~~n~qp~~~~vi~~~~~~~~l~~~~~---------~~~~~~   72 (217)
T d1vfra_           2 HPIIHDLENRYTSKKYDPSKKVSQEDLAVLLEALRLSASSINSQPWKFIVIESDAAKQRMHDSFA---------NMHQFN   72 (217)
T ss_dssp             CHHHHHHHHCCBCSSBCTTCCCCHHHHHHHHHHHHTCCCGGGCCCEEEEEECSHHHHHHHHHTTS---------SSCGGG
T ss_pred             CHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHH---------HHHHHH
T ss_conf             05899997070000549999889899999999996189887898846899459899999999975---------455320


Q ss_pred             HHHHHCCCEEEEEEECCCCC--------------------------------------CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             65541574899998335655--------------------------------------3135788899999999999999
Q batch____        80 RNAPFRAPLIITVVAKCEEN--------------------------------------HKVPRWEQEMSAGCAVMAMQMA  121 (183)
Q Consensus        80 ~~~~~~a~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~g~a~~~~~La  121 (183)
                      ......++..+...++....                                      ......+...++|+++||++|+
T Consensus        73 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~~~La  152 (217)
T d1vfra_          73 QPHIKACSHVILFANKLSYTRDDYDVVLSKAVADKRITEEQKEAAFASFKFVELNCDENGEHKAWTKPQAYLALGNALHT  152 (217)
T ss_dssp             THHHHHSSEEEEEEEESCCCHHHHHHHHHHHHHTTSSCHHHHHHHGGGGHHHHHTCCTTSCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             00010188038974253223355689875676520122578888887543233201440134446888799999999999


Q ss_pred             HHHCCCCEEEECCCCCCHHHHHHHCCC-CCCCEEEEEEEEECCCCCCCCCCC----CCCHHHCCCC
Q ss_conf             997798389744333794899997174-988789999984053788788886----8994450137
Q batch____       122 AVAQGFGGIWRSGALTESPVVREAFGC-REQDKIVGFLYLGTPQLKASTSIN----VPDPTPFVTY  182 (183)
Q Consensus       122 a~~~Glgsc~~~~~~~~~~~~~~~l~i-p~~~~~~~~i~iGyp~~~~~~~~~----~p~~~~~v~~  182 (183)
                      |+++|||||||++  ++.+.+++.||+ |+++.+++++++|||++++..+++    |.+.+++|+|
T Consensus       153 A~~~Glgs~~~~~--~~~~~~~~~l~l~~~~~~~~~~i~lGy~~~~~~~~~~~~~~R~p~eevv~~  216 (217)
T d1vfra_         153 LARLNIDSTTMEG--IDPELLSEIFADELKGYECHVALAIGYHHPSEDYNASLPKSRKAFEDVITI  216 (217)
T ss_dssp             HHHHTCEEEEECC--SCHHHHHHHTTTTTTTEEEEEEEEEECBCTTTCGGGGSCCCCCCHHHHCCC
T ss_pred             HHHHCCCCEEECC--CCHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHEEEE
T ss_conf             9981278166236--698999998278934679999998236686644345578776887891375