18/01/2012 07:15:04 : INFO  : Run start: Wed Jan 18 07:15:04 GMT 2012
18/01/2012 07:15:04 : INFO  : Initialised job
18/01/2012 07:15:04 : INFO  : Renaming log file 'phyre2_20120118_071504.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/62190687ea7e3136/phyre_20120118_071504.log'
18/01/2012 07:15:04 : INFO  : Initialised job:
Sequence
>batch____
MDSHTLIQALIYLGSAALIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDAESILHFAE
IGVVLMLFIIGLELDPQRLWKLRAAVFGCGALQMVICGGLLGLFCMLLGLRWQVAELIGM
TLALSSTAIAMQAMNERNLMVTQMGRSAFAVLLFQDIAAIPLVAMIPLLATSSASTTMGA
FALSALKVAGALVLVVLLGRYVTRPALRFVARSGLREVFSAVALFLVFGFGLLLEEVGLS
MAMGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIGVGMSIDFGTLLENPLRIVILL
LGFLIIKIAMLWLIARPLQVPNKQRRWFAVLLGQGSEFAFVVFGAAQMANVLEPEWAKSL
TLAVALSMAATPILLVILNRLEQSSTEEAREADEIDEEQPRVIIAGFGRFGQITGRLLLS
SGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNLQL
TEMVKEHFPHLQIIARARDVDHYIRLRQAGVEKPERETFEGALKTGRLALESLGLGPYEA
RERADVFRRFNIQMVEEMAMVENDTKARAAVYKRTSAMLSEIITEDREHLSLIQRHGWQG
TEEGKHTGNMADEPETKPSS

18/01/2012 07:15:04 : INFO  : Checked sequence
18/01/2012 07:15:04 : INFO  : Finding homologues with PSI-BLAST
18/01/2012 07:15:04 : INFO  : PSI-BLAST 3 iterations
18/01/2012 07:19:38 : INFO  : PSI-BLAST 5 iterations
18/01/2012 07:25:10 : INFO  : Finished PSI-BLAST
18/01/2012 07:25:10 : INFO  : Running Buildali to generate a3m file
18/01/2012 07:54:08 : INFO  : Converting to HMM
18/01/2012 07:54:30 : INFO  : Calibrating HMM
18/01/2012 07:54:47 : INFO  : Searching HMM database
18/01/2012 08:06:59 : INFO  : Finished buildali
18/01/2012 08:06:59 : INFO  : Predicting secondary structure
18/01/2012 08:06:59 : INFO  : Predicted secondary structure (PSI-Pred)
18/01/2012 08:06:59 : INFO  : Predicting Disordered regions
18/01/2012 08:06:59 : INFO  : Predicted Disorder (Disopred)
18/01/2012 08:06:59 : INFO  : Running memsat_svm check
18/01/2012 08:09:46 : INFO  : Running memsat_svm full
18/01/2012 08:17:26 : INFO  : Predicted Transmembrane (memsat_svm) ID '62190687ea7e3136'
18/01/2012 08:17:26 : INFO  : Initialising fold library search
18/01/2012 08:17:26 : INFO  : Initialised search input
18/01/2012 08:17:26 : INFO  : Building Ensemble models
18/01/2012 08:17:26 : INFO  : Building hh.c3eywA_.model.1.pdb
18/01/2012 08:17:27 : INFO  : Building hh.c1zcdA_.model.2.pdb
18/01/2012 08:17:27 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/62190687ea7e3136/hh.c1zcdA_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/62190687ea7e3136/c1zcdA_.2.pdb
18/01/2012 08:17:28 : INFO  : Building hh.c2fy8A_.model.3.pdb
18/01/2012 08:17:28 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/62190687ea7e3136/hh.c2fy8A_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/62190687ea7e3136/c2fy8A_.11.pdb
18/01/2012 08:17:28 : INFO  : Building hh.c1pjcA_.model.4.pdb
18/01/2012 08:17:28 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/62190687ea7e3136/hh.c1pjcA_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/62190687ea7e3136/c1pjcA_.114.pdb
18/01/2012 08:17:28 : INFO  : Building c3eywA_.1.pdb
18/01/2012 08:17:30 : INFO  : Building c1zcdA_.2.pdb
18/01/2012 08:17:30 : INFO  : Building c3fwzA_.3.pdb
18/01/2012 08:17:31 : INFO  : Building c3c85A_.4.pdb
18/01/2012 08:17:31 : INFO  : Building d1id1a_.5.pdb
18/01/2012 08:17:32 : INFO  : Building d1lssa_.6.pdb
18/01/2012 08:17:34 : INFO  : Building d2hmva1.7.pdb
18/01/2012 08:17:35 : INFO  : Building c3llvA_.8.pdb
18/01/2012 08:17:35 : INFO  : Building d2fy8a1.9.pdb
18/01/2012 08:17:36 : INFO  : Building c2g1uA_.10.pdb
18/01/2012 08:17:37 : INFO  : Building c2fy8A_.11.pdb
18/01/2012 08:17:37 : INFO  : Building c3l4bG_.12.pdb
18/01/2012 08:17:38 : INFO  : Building c1lnqC_.13.pdb
18/01/2012 08:17:39 : INFO  : Building c3u6nC_.14.pdb
18/01/2012 08:17:40 : INFO  : Building c3mt5A_.15.pdb
18/01/2012 08:17:42 : INFO  : Building c3nafA_.16.pdb
18/01/2012 08:17:43 : INFO  : Building d1e5qa1.17.pdb
18/01/2012 08:17:45 : INFO  : Building d1pjqa1.18.pdb
18/01/2012 08:17:45 : INFO  : Building c3ic5A_.19.pdb
18/01/2012 08:17:46 : INFO  : Building d2pgda2.20.pdb
18/01/2012 08:17:54 : INFO  : Finished HH model building
18/01/2012 08:17:54 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
18/01/2012 08:17:59 : INFO  : html domain output complete ID '62190687ea7e3136'
18/01/2012 08:49:46 : INFO  : Run end  : Wed Jan 18 08:49:46 GMT 2012
