196 d2hoxa1 Probab=99.83   E-value=2.1e-17  Score=124.67  Aligned_columns=296  Identities=16%

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCCCC-----EEEEECCHHHHHHHHHHHHHHCCCC-----CEEEEEECCCCCCCH
Q ss_conf             742367777968999999999874977885-----1899578689999999999714799-----769997187654417
Q batch____        73 THTAYQIVPYESYVTLAEKINALAPVSGQA-----KTAFFTTGAEAVENAVKIARAHTGR-----PGVIAFSGGFHGRTY  142 (421)
Q Consensus        73 ~~~~~~~~~~~~~~~la~~l~~~~~~~g~~-----~v~~~~sGs~a~~~al~la~~~~~r-----~~ii~~~~~~Hg~~~  142 (421)
                      ....+.....+...+|.+.+.++....|..     .+++++..+++...++.....-...     +.-++....+.....
T Consensus        90 ~~y~~~~~~~~~~~~L~~~i~~l~~~~g~~~~~~~~iv~t~G~~~~l~~a~~aL~~pGd~v~~~~p~~v~~~~p~y~~~~  169 (425)
T d2hoxa1          90 MSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFR  169 (425)
T ss_dssp             CSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHH
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHH
T ss_conf             56545664344528999999999885088678877699946889999999998648886123567743573002377899


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCEECCHHHHH
Q ss_conf             89963288543334666658880154476432457886848999999961157577699998078888997308988999
Q batch____       143 MTMALTGKVAPYKIGFGPFPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVA  222 (421)
Q Consensus       143 ~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~a~vi~Epv~~~~G~~~~~~~~l~  222 (421)
                      ..+...+.+...-..                        |.+.++.....    .+...++..|  +||.+.+.+     
T Consensus       170 ~~~~~~~~~~~~~~~------------------------d~~~~~~~~~~----~~~~~~i~~P--~NPtG~v~~-----  214 (425)
T d2hoxa1         170 EQTKYFDKKGYVWAG------------------------NAANYVNVSNP----EQYIEMVTSP--NNPEGLLRH-----  214 (425)
T ss_dssp             HHHHHSCCTTEEEEE------------------------EGGGGTTCSCG----GGEEEEEESS--CTTTCCCCC-----
T ss_pred             HHHHHCCCCCCCCCC------------------------CHHHHHHHCCC----CCEEEEECCC--CCCCCEEEE-----
T ss_conf             999855997444247------------------------98899972488----8579998178--888560654-----


Q ss_pred             HHHHHHHHCCEEEEEECCCCCCCCCCCCCHHHHCCCCCCEEEECHHHH-CCEEEEEEEEH-HHHHHHHHHHCCCCCCCCC
Q ss_conf             999999985919998478768640478547887089854430010410-76028999961-8899753111024677859
Q batch____       223 AIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYADKPDLMTMAKSLA-GGMPLSGVVGN-ANIMDAPAPGGLGGTYAGN  300 (421)
Q Consensus       223 ~l~~l~~~~g~~li~DE~~tg~g~~G~~~~~~~~~~~~di~t~sK~l~-~~~~~g~~~~~-~~~~~~~~~~~~~~t~~~~  300 (421)
                           |.++|+++|.||+|..+-..+.....   +....+.++||.++ .|.++||+++. +++.+.+.+....++.+.+
T Consensus       215 -----a~~~~~~~i~De~y~~~~~~~~~~~~---~~~i~~~S~SK~~g~~GlRiG~~i~~~~~i~~~l~~~~~~~~~~~s  286 (425)
T d2hoxa1         215 -----AVIKGCKSIYDMVYYWPHYTPIKYKA---DEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTP  286 (425)
T ss_dssp             -----CSSTTCEEEEECTTCSTTTSCCCSCB---CCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCC
T ss_pred             -----EEECCCEEEEECCCCCCCCCCCCCCC---CCEEEEEECCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCC
T ss_conf             -----23239689971432343323333456---8549998155101233231018996898999999986410577736


Q ss_pred             HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHCC---------------CCEECCCCCCEEEE
Q ss_conf             899999999875412589---------999999999999999999987189---------------94003667727999
Q batch____       301 PLAVAAAHAVLNIIDKES---------LCERANQLGQRLKNTLIDAKESVP---------------AIAAVRGLGSMIAV  356 (421)
Q Consensus       301 ~~~~a~~~a~~~~~~~~~---------~~~~~~~~~~~l~~~l~~~~~~~~---------------~i~~v~g~G~~~~i  356 (421)
                      ..++.++.+.+.......         +.+..++.....++.+.+.+...+               ........+.+.|+
T Consensus       287 ~~~Q~aA~~~L~~~~~~~~~~~~~~~~~~~~~r~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~~~~~~~~~~~~f~w~  366 (425)
T d2hoxa1         287 RETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWV  366 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEE
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf             89999999996020134565555489999999999999999999998635763003456554322100137787616998


Q ss_pred             EECCCCCCCCCHHHHHHHHHHHHHCCEEEEEE---CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             96474557886899999999999789399962---588877999607888899999999999998459
Q batch____       357 EFNDPQTGEPSAAIAQKIQQRALAQGLLLLTC---GAYGNVIRFLYPLTIPDAQFDAAMKILQDALSD  421 (421)
Q Consensus       357 ~~~~~~~~~~~~~~a~~~~~~l~~~Gv~v~~~---~~~~~~lR~~~s~~~t~~~i~~~i~~l~~al~E  421 (421)
                      ++.......        +.+.|.++||++.|+   +...+.+|+  ++..+++++|+++++|++.++.
T Consensus       367 ~~~~~~~~~--------~~~lL~e~GI~v~pGs~FG~~~~~vRi--Sl~~~~e~ld~~l~rL~~~v~~  424 (425)
T d2hoxa1         367 KCEWEEDKD--------CYQTFQNGRINTQNGVGFEASSRYVRL--SLIKTQDDFDQLMYYLKDMVKA  424 (425)
T ss_dssp             EECSGGGCS--------HHHHHHHTTEECEEGGGGTSCTTEEEE--ECSSCHHHHHHHHHHHHHHHTC
T ss_pred             ECCCCCHHH--------HHHHHHHCCEEEECCCCCCCCCCEEEE--EECCCHHHHHHHHHHHHHHHHC
T ss_conf             678980899--------999999669499717023898865999--9139989999999999998726