20 c1vliA_ Probab=98.24   E-value=1.6e-05  Score=54.32  Aligned_columns=243  Identities=16%

Q ss_pred             HHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             88988548877159997578788867899999999999985211869999710006874477653445887667557766
Q batch____        42 AIHKILKGNDDRLLVVIGPCSIHDPVAAKEYATRLLALREELKDELEIVMRVYFEKPRTTVGWKGLINDPHMDNSFQIND  121 (350)
Q Consensus        42 ~i~~Il~G~D~rllVIvGPCSI~d~~~a~eyA~~L~~l~~~~~~~l~ivmR~y~eKPRTtvGwKGli~DP~~~~~~~i~~  121 (350)
                      .|.+...|.+++.+||+-=+.-|  +.-++.|.+|-..+++-.-+ .+=+-+|.-.-.++-++    ..++.+.--..+-
T Consensus         4 ~I~~~~ig~~~~~~IIAEig~NH--~Gdl~~A~~lI~~A~~aGad-aVKFQt~~~~~~~~~~~----~~~~~~~~~~~el   76 (358)
T c1vliA_           4 QIANKTVGKDAPVFIIAEAGINH--DGKLDQAFALIDAAAEAGAD-AVKFQXFQADRXYQKDP----DVSIFSLVQSXEX   76 (358)
T ss_dssp             EETTEEEETTSCCEEEEEEETTT--TTCHHHHHHHHHHHHHHTCS-EEEECCBCGGGGTSCCC----CCCHHHHGGGBSS
T ss_pred             EECCEEECCCCCEEEEEECCCCC--CCCHHHHHHHHHHHHHCCCC-EEEEECCCCCCCCCCCC----CCCHHHHHHHCCC
T ss_conf             78889857999659997622035--78789999999999971997-89842014210015655----6304577753169


Q ss_pred             HHHHHHHHHHHHHHCCCCEEEHHCCCCCHHHHHHH-HHHHEECCCCCCCHHHHHHHCCCCCCEEEECCCCCCHHHHHHHH
Q ss_conf             69999999998885399436111170248999975-43312235443579999985288985586458888799999999
Q batch____       122 GLRIARKLLLDINDSGLPAAGEFLDMITPQYLADL-MSWGAIGARTTESQVHRELASGLSCPVGFKNGTDGTIKVAIDAI  200 (350)
Q Consensus       122 GL~~~R~ll~~i~~~GlPiatE~ld~~~~~y~~Dl-vs~~~IGARt~esQ~hre~aSgls~PVGfKN~t~g~i~~ai~Ai  200 (350)
                      .....++|...-.+.|+...+...|....+++.++ +....|+++...+..+++.+.....||-+..|+ +++.+.-.| 
T Consensus        77 ~~e~~~~L~~~~~~~Gi~f~sTpfd~~svd~l~~~~v~~~KIaS~el~n~pLL~~~A~~gkPvilSTGm-atl~Ei~~A-  154 (358)
T c1vliA_          77 PAEWILPLLDYCREKQVIFLSTVCDEGSADLLQSTSPSAFKIASYEINHLPLLKYVARLNRPXIFSTAG-AEISDVHEA-  154 (358)
T ss_dssp             CGGGHHHHHHHHHHTTCEEECBCCSHHHHHHHHTTCCSCEEECGGGTTCHHHHHHHHTTCSCEEEECTT-CCHHHHHHH-
T ss_pred             CHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCEEEECHHHCCCHHHHHHHHHCCCCEEEECCC-CCHHHHHHH-
T ss_conf             989999999999975982998347999999998639986998412279889999996318971851354-688999999-


Q ss_pred             HHHCCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCC-CCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHH
Q ss_conf             97228854753458884799961799744899725888-89886679999999997399987898466344885610128
Q batch____       201 NAAGAPHCFLSVTKWGHSAIVNTSGNGDCHIILRGGKE-PNYSAKHVAEVKEGLNKAGLPAQVMIDFSHANSSKQFKKQM  279 (350)
Q Consensus       201 ~aa~~~H~fl~v~~~G~~~~i~T~GN~d~hiiLRGg~~-pNY~~~~i~~~~~~l~k~~~~~~iivDcSHgNs~K~~~~Q~  279 (350)
                                       +.++...||++ .++|--.+. |. ..+.+.......-+...+..++-..+|--++       
T Consensus       155 -----------------v~~i~~~g~~~-i~llhC~s~YP~-p~~~~nL~~i~~L~~~f~~~~vG~SDHt~g~-------  208 (358)
T c1vliA_         155 -----------------WRTIRAEGNNQ-IAIXHCVAKYPA-PPEYSNLSVIPXLAAAFPEAVIGFSDHSEHP-------  208 (358)
T ss_dssp             -----------------HHHHHTTTCCC-EEEEEECSSSSC-CGGGCCTTHHHHHHHHSTTSEEEEEECCSSS-------
T ss_pred             -----------------HHHHHHCCCCC-EEEEECCCCCCC-CHHHCCHHHHHHHHHHCCCCEECCCCCCCCC-------
T ss_conf             -----------------99999679984-899955888898-8667374678999975178602147766554-------


Q ss_pred             HHHHHHHHHHHCCCCCCCEEEEEEEEC--------CCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             999999999862842351899996404--------88767787776105601203557836789999999999874
Q batch____       280 DVCADVCQQIAGGEKAIIGVMVESHLV--------EGNQSLESGEPLAYGKSITDACIGWEDTDALLRQLANAVKA  347 (350)
Q Consensus       280 ~V~~~i~~q~~~g~~~I~GvMIES~l~--------~G~Q~i~p~~~l~yG~SITD~Ci~w~~T~~~l~~la~av~~  347 (350)
                        ....+..++.|..     +||-|+.        |..++++|.+                     |.++-+.+|.
T Consensus       209 --~~~~~aAvalGA~-----vIEKHftldk~~~G~Dh~~Sl~P~e---------------------l~~lv~~ir~  256 (358)
T c1vliA_         209 --TEAPCAAVRLGAK-----LIEKHFTIDKNLPGADHSFALNPDE---------------------LKEXVDGIRK  256 (358)
T ss_dssp             --SHHHHHHHHTTCS-----EEEEEBCSCTTSSCSSCTTSBCHHH---------------------HHHHHHHHHH
T ss_pred             --CHHHHHHHHCCCE-----EEEEEECCCCCCCCCCEEEECCHHH---------------------HHHHHHHHHH
T ss_conf             --0356888630300-----0022421463478998023338799---------------------9999999999