 |
| Job Description | P0A9M0 | | Confidence | 94.07% | Date | Thu Jan 5 11:10:41 GMT 2012 |
| Rank | 400 | Aligned Residues | 48 |
| % Identity | 25% | Template | c3l0oB_ |
| PDB info |
PDB header:hydrolase | Chain: B: PDB Molecule:transcription termination factor rho; |
PDBTitle: structure of rna-free rho transcription termination factor from2 thermotoga maritima
|
| Resolution | 2.35 Å |
|
|   |   |
339 | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | |
|
|
|
. | . | . | 380 | . | . | . | . | . | . |
| Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . | . | . | . |  |  |  |  |  |
|  |  |  |
|
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
A | V | Q | S | R | V | N | K | I | K | G | P | I | L | C | L | V | G | P | P | G | V | G | K | T | S | L | G | Q | S | I | A | K | A | T | G | R | K | . |
. |
. |
. |
Y | V | R | M | A | L | G | G | V | R |
| Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|
|
|
|
|
|
|
|   |
|
|   |   |
|
|   |   |
|   |   |   | . | . | . | . |   |   |   |   |   |   |   |   |   |   |
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
|
|
|   |
|   |
|
|
|
|
|
|
|   |   |
|   |
|   |   |
|   |
|
|
|   |
|
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |
|
|
|
|
|
| Template Sequence |   |
L | I | D | L | F | A | P | I | G | K | G | Q | R | G | M | I | V | A | P | P | K | A | G | K | T | T | I | L | K | E | I | A | N | G | I | A | E | N | H | P | D | T | I | R | I | I | L | L | I | D | E | R |
| Template Known Secondary structure |   |
 |  |  |  |  | S |
|
| B | T | T |
|  |  |  |  |  |  |
| T | T | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| T | T | S |  |  |  |  |  |  |  |  |  |
|
| Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
165 | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|