Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	A	Q	V	S	L	E	L	H	H	R	I	S	Q	F	L	F	H	E	A	S	L	L	D	D	W	K	F	R	D	W	L	A	Q	L	D	E	E	I	R	Y	T	M	R	T	T	V	N	A	Q	T	R	D	R	R	K	G	V	Q
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?																																										?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		P	P	T	T	W	I	F	N	D	T	K	D	Q	L	E	R	R	I	A	R	L	E	T	G	M	A	W	A	E	E	P	P	S	R	T	R	H	L	I	S	N	C	Q	I	S	E	T	D	I	P	N	V	F	A	V	R	V	N	Y	L
Secondary structure
SS confidence
Disorder																									?		?	?																				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Sequence		L	Y	R	A	Q	K	E	R	D	E	T	F	Y	V	G	T	R	F	D	K	V	R	R	L	E	D	D	N	W	R	L	L	E	R	D	I	V	L	D	Q	A	V	I	T	S	H	N	L	S	V	L	F
Secondary structure
SS confidence
Disorder																																												?			?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1uli chain B Region: 2 - 172 Aligned: 170 Modelled: 171 Confidence: 100.0% Identity: 31% Fold: Cystatin-like Superfamily: NTF2-like Family: Ring hydroxylating beta subunit Phyre2 PDB 3gzx chain B Region: 2 - 172 Aligned: 170 Modelled: 171 Confidence: 100.0% Identity: 38% PDB header:oxidoreductase Chain: B: PDB Molecule:biphenyl dioxygenase subunit beta; PDBTitle: crystal structure of the biphenyl dioxygenase in complex with biphenyl2 from comamonas testosteroni sp. strain b-356 Phyre2 PDB 1wql chain B domain 1 Region: 2 - 172 Aligned: 170 Modelled: 171 Confidence: 100.0% Identity: 35% Fold: Cystatin-like Superfamily: NTF2-like Family: Ring hydroxylating beta subunit Phyre2 PDB 2bmo chain B domain 1 Region: 3 - 171 Aligned: 168 Modelled: 169 Confidence: 100.0% Identity: 27% Fold: Cystatin-like Superfamily: NTF2-like Family: Ring hydroxylating beta subunit Phyre2 PDB 2gbx chain F Region: 4 - 171 Aligned: 166 Modelled: 168 Confidence: 100.0% Identity: 28% PDB header:oxidoreductase Chain: F: PDB Molecule:biphenyl 2,3-dioxygenase beta subunit; PDBTitle: crystal structure of biphenyl 2,3-dioxygenase from sphingomonas2 yanoikuyae b1 bound to biphenyl Phyre2 PDB 1o7n chain B Region: 3 - 171 Aligned: 168 Modelled: 169 Confidence: 100.0% Identity: 24% Fold: Cystatin-like Superfamily: NTF2-like Family: Ring hydroxylating beta subunit Phyre2 PDB 2b1x chain B domain 1 Region: 4 - 171 Aligned: 166 Modelled: 168 Confidence: 100.0% Identity: 33% Fold: Cystatin-like Superfamily: NTF2-like Family: Ring hydroxylating beta subunit Phyre2 PDB 3e99 chain A domain 1 Region: 9 - 164 Aligned: 140 Modelled: 143 Confidence: 100.0% Identity: 23% Fold: Cystatin-like Superfamily: NTF2-like Family: Ring hydroxylating beta subunit Phyre2 PDB 3eby chain A domain 1 Region: 4 - 170 Aligned: 151 Modelled: 166 Confidence: 100.0% Identity: 19% Fold: Cystatin-like Superfamily: NTF2-like Family: Ring hydroxylating beta subunit Phyre2 PDB 3ef8 chain A domain 1 Region: 7 - 162 Aligned: 130 Modelled: 130 Confidence: 99.9% Identity: 18% Fold: Cystatin-like Superfamily: NTF2-like Family: BaiE/LinA-like Phyre2 PDB 3ejv chain A domain 1 Region: 6 - 159 Aligned: 140 Modelled: 140 Confidence: 99.9% Identity: 11% Fold: Cystatin-like Superfamily: NTF2-like Family: BaiE/LinA-like Phyre2 PDB 2rgq chain A domain 1 Region: 4 - 162 Aligned: 129 Modelled: 134 Confidence: 99.9% Identity: 16% Fold: Cystatin-like Superfamily: NTF2-like Family: Rv3472-like Phyre2 PDB 2chc chain A domain 1 Region: 7 - 159 Aligned: 123 Modelled: 126 Confidence: 99.9% Identity: 17% Fold: Cystatin-like Superfamily: NTF2-like Family: Rv3472-like Phyre2 PDB 3a76 chain B Region: 1 - 159 Aligned: 134 Modelled: 135 Confidence: 99.9% Identity: 12% PDB header:lyase Chain: B: PDB Molecule:gamma-hexachlorocyclohexane dehydrochlorinase; PDBTitle: the crystal structure of lina Phyre2 PDB 3std chain A Region: 3 - 159 Aligned: 138 Modelled: 139 Confidence: 99.9% Identity: 10% Fold: Cystatin-like Superfamily: NTF2-like Family: Scytalone dehydratase Phyre2 PDB 1idp chain A Region: 4 - 159 Aligned: 137 Modelled: 138 Confidence: 99.9% Identity: 9% Fold: Cystatin-like Superfamily: NTF2-like Family: Scytalone dehydratase Phyre2 PDB 3b8l chain A domain 1 Region: 4 - 167 Aligned: 137 Modelled: 139 Confidence: 99.9% Identity: 14% Fold: Cystatin-like Superfamily: NTF2-like Family: BaiE/LinA-like Phyre2 PDB 2rfr chain A domain 1 Region: 7 - 161 Aligned: 130 Modelled: 132 Confidence: 99.9% Identity: 16% Fold: Cystatin-like Superfamily: NTF2-like Family: BaiE/LinA-like Phyre2 PDB 3rob chain C Region: 7 - 155 Aligned: 120 Modelled: 123 Confidence: 99.5% Identity: 6% PDB header:structural genomics, unknown function Chain: C: PDB Molecule:uncharacterized conserved protein; PDBTitle: the crystal structure of a conserved protein from planctomyces2 limnophilus dsm 3776 Phyre2 PDB 3gzr chain A Region: 8 - 168 Aligned: 136 Modelled: 137 Confidence: 99.4% Identity: 7% PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein with a ntf2-like fold; PDBTitle: crystal structure of an uncharacterized protein with a cystatin-like2 fold (cc_2572) from caulobacter vibrioides at 1.40 a resolution Phyre2 1 d1ulib_ 2 c3gzxB_ 3 d1wqlb1 4 d2bmob1 5 c2gbxF_ 6 d1o7nb_ 7 d2b1xb1 8 d3e99a1 9 d3ebya1 10 d3ef8a1 11 d3ejva1 12 d2rgqa1 13 d2chca1 14 c3a76B_ 15 d3stda_ 16 d1idpa_ 17 d3b8la1 18 d2rfra1 19 c3robC_ 20 c3gzrA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1ulib_ 100.0 31 Fold:Cystatin-like Superfamily:NTF2-like Family:Ring hydroxylating beta subunit 2 c3gzxB_ 100.0 38 PDB header:oxidoreductase Chain: B: PDB Molecule:biphenyl dioxygenase subunit beta; PDBTitle: crystal structure of the biphenyl dioxygenase in complex with biphenyl2 from comamonas testosteroni sp. strain b-356 3 d1wqlb1 100.0 35 Fold:Cystatin-like Superfamily:NTF2-like Family:Ring hydroxylating beta subunit 4 d2bmob1 100.0 27 Fold:Cystatin-like Superfamily:NTF2-like Family:Ring hydroxylating beta subunit 5 c2gbxF_ 100.0 28 PDB header:oxidoreductase Chain: F: PDB Molecule:biphenyl 2,3-dioxygenase beta subunit; PDBTitle: crystal structure of biphenyl 2,3-dioxygenase from sphingomonas2 yanoikuyae b1 bound to biphenyl 6 d1o7nb_ 100.0 24 Fold:Cystatin-like Superfamily:NTF2-like Family:Ring hydroxylating beta subunit 7 d2b1xb1 100.0 33 Fold:Cystatin-like Superfamily:NTF2-like Family:Ring hydroxylating beta subunit 8 d3e99a1 100.0 23 Fold:Cystatin-like Superfamily:NTF2-like Family:Ring hydroxylating beta subunit 9 d3ebya1 100.0 19 Fold:Cystatin-like Superfamily:NTF2-like Family:Ring hydroxylating beta subunit 10 d3ef8a1 99.9 18 Fold:Cystatin-like Superfamily:NTF2-like Family:BaiE/LinA-like 11 d3ejva1 99.9 11 Fold:Cystatin-like Superfamily:NTF2-like Family:BaiE/LinA-like 12 d2rgqa1 99.9 16 Fold:Cystatin-like Superfamily:NTF2-like Family:Rv3472-like 13 d2chca1 99.9 17 Fold:Cystatin-like Superfamily:NTF2-like Family:Rv3472-like 14 c3a76B_ 99.9 12 PDB header:lyase Chain: B: PDB Molecule:gamma-hexachlorocyclohexane dehydrochlorinase; PDBTitle: the crystal structure of lina 15 d3stda_ 99.9 10 Fold:Cystatin-like Superfamily:NTF2-like Family:Scytalone dehydratase 16 d1idpa_ 99.9 9 Fold:Cystatin-like Superfamily:NTF2-like Family:Scytalone dehydratase 17 d3b8la1 99.9 14 Fold:Cystatin-like Superfamily:NTF2-like Family:BaiE/LinA-like 18 d2rfra1 99.9 16 Fold:Cystatin-like Superfamily:NTF2-like Family:BaiE/LinA-like 19 c3robC_ 99.5 6 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:uncharacterized conserved protein; PDBTitle: the crystal structure of a conserved protein from planctomyces2 limnophilus dsm 3776 20 c3gzrA_ 99.4 7 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein with a ntf2-like fold; PDBTitle: crystal structure of an uncharacterized protein with a cystatin-like2 fold (cc_2572) from caulobacter vibrioides at 1.40 a resolution 21 d3blza1 not modelled 99.4 13 Fold:Cystatin-like Superfamily:NTF2-like Family:Sbal0622-like 22 d3d9ra1 not modelled 99.4 12 Fold:Cystatin-like Superfamily:NTF2-like Family:ECA1476-like 23 c3hx8A_ not modelled 99.3 11 PDB header:isomerase Chain: A: PDB Molecule:putative ketosteroid isomerase; PDBTitle: crystal structure of putative ketosteroid isomerase2 (np_103587.1) from mesorhizobium loti at 1.45 a resolution 24 c3h51A_ not modelled 99.1 8 PDB header:protein binding Chain: A: PDB Molecule:putative calcium/calmodulin dependent protein kinase ii PDBTitle: crystal structure of putative calcium/calmodulin dependent protein2 kinase ii association domain (np_636218.1) from xanthomonas3 campestris at 1.70 a resolution 25 d1hkxa_ not modelled 99.1 10 Fold:Cystatin-like Superfamily:NTF2-like Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A 26 d3cu3a1 not modelled 99.0 11 Fold:Cystatin-like Superfamily:NTF2-like Family:BaiE/LinA-like 27 d3cnxa1 not modelled 99.0 10 Fold:Cystatin-like Superfamily:NTF2-like Family:SAV4671-like 28 d2ux0a1 not modelled 98.9 10 Fold:Cystatin-like Superfamily:NTF2-like Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A 29 d2f86b1 not modelled 98.9 10 Fold:Cystatin-like Superfamily:NTF2-like Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A 30 d3b7ca1 not modelled 98.9 11 Fold:Cystatin-like Superfamily:NTF2-like Family:SO0125-like 31 c3f7sA_ not modelled 98.8 11 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized ntf2-like protein; PDBTitle: crystal structure of a ntf2-like protein of unknown function (pp_4556)2 from pseudomonas putida kt2440 at 2.11 a resolution 32 c3dukD_ not modelled 98.7 12 PDB header:unknown function Chain: D: PDB Molecule:ntf2-like protein of unknown function; PDBTitle: crystal structure of a ntf2-like protein of unknown function2 (mfla_0564) from methylobacillus flagellatus kt at 2.200 a resolution 33 c3soyA_ not modelled 98.7 10 PDB header:membrane protein Chain: A: PDB Molecule:ntf2-like superfamily protein; PDBTitle: nuclear transport factor 2 (ntf2-like) superfamily protein from2 salmonella enterica subsp. enterica serovar typhimurium str. lt2 34 d2r4ia1 not modelled 98.7 14 Fold:Cystatin-like Superfamily:NTF2-like Family:CHU142-like 35 d2rcda1 not modelled 98.6 9 Fold:Cystatin-like Superfamily:NTF2-like Family:BxeB1374-like 36 c3bb9D_ not modelled 98.5 7 PDB header:unknown function Chain: D: PDB Molecule:putative orphan protein; PDBTitle: crystal structure of a putative ketosteroid isomerase (sfri_1973) from2 shewanella frigidimarina ncimb 400 at 1.80 a resolution 37 c3gwrA_ not modelled 98.4 14 PDB header:protein binding Chain: A: PDB Molecule:putative calcium/calmodulin-dependent protein kinase type PDBTitle: crystal structure of putative calcium/calmodulin-dependent protein2 kinase type ii association domain (yp_315894.1) from thiobacillus3 denitrificans atcc 25259 at 2.00 a resolution 38 d3bb9a1 not modelled 98.4 8 Fold:Cystatin-like Superfamily:NTF2-like Family:SO0125-like 39 d2gxfa1 not modelled 98.4 12 Fold:Cystatin-like Superfamily:NTF2-like Family:YybH-like 40 d2owpa1 not modelled 98.4 8 Fold:Cystatin-like Superfamily:NTF2-like Family:BxeB1374-like 41 c3fsdA_ not modelled 98.3 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ntf2-like protein of unknown function in nutrient uptake; PDBTitle: crystal structure of ntf2-like protein of unknown function in nutrient2 uptake (yp_427473.1) from rhodospirillum rubrum atcc 11170 at 1.70 a3 resolution 42 c3kspA_ not modelled 98.2 8 PDB header:unknown function Chain: A: PDB Molecule:calcium/calmodulin-dependent kinase ii association domain; PDBTitle: crystal structure of a putative ca/calmodulin-dependent kinase ii2 association domain (exig_1688) from exiguobacterium sibiricum 255-153 at 2.59 a resolution 43 c3ke7A_ not modelled 98.2 11 PDB header:isomerase Chain: A: PDB Molecule:putative ketosteroid isomerase; PDBTitle: crystal structure of putative ketosteroid isomerase (yp_001303366.1)2 from parabacteroides distasonis atcc 8503 at 1.45 a resolution 44 c1z1sA_ not modelled 97.9 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pa3332; PDBTitle: crystal structure of putative isomerase pa3332 from2 pseudomonas aeruginosa 45 d1nwwa_ not modelled 97.9 10 Fold:Cystatin-like Superfamily:NTF2-like Family:Limonene-1,2-epoxide hydrolase-like 46 d1s5aa_ not modelled 97.7 8 Fold:Cystatin-like Superfamily:NTF2-like Family:PhzA/PhzB-like 47 d1oh0a_ not modelled 97.7 7 Fold:Cystatin-like Superfamily:NTF2-like Family:Ketosteroid isomerase-like 48 d1z1sa1 not modelled 97.7 15 Fold:Cystatin-like Superfamily:NTF2-like Family:PhzA/PhzB-like 49 d1ohpa1 not modelled 97.6 7 Fold:Cystatin-like Superfamily:NTF2-like Family:Ketosteroid isomerase-like 50 c3ff0A_ not modelled 97.6 18 PDB header:biosynthetic protein Chain: A: PDB Molecule:phenazine biosynthesis protein phzb 2; PDBTitle: crystal structure of a phenazine biosynthesis-related protein (phzb2)2 from pseudomonas aeruginosa at 1.90 a resolution 51 c3fkaD_ not modelled 97.6 13 PDB header:unknown function Chain: D: PDB Molecule:uncharacterized ntf-2 like protein; PDBTitle: crystal structure of a ntf-2 like protein of unknown function2 (spo1084) from silicibacter pomeroyi dss-3 at 1.69 a resolution 52 d3ec9a1 not modelled 97.6 13 Fold:Cystatin-like Superfamily:NTF2-like Family:PhzA/PhzB-like 53 c3fgyB_ not modelled 97.5 7 PDB header:unknown function Chain: B: PDB Molecule:uncharacterized ntf2-like protein; PDBTitle: crystal structure of a ntf2-like protein (bxe_b1094) from burkholderia2 xenovorans lb400 at 1.59 a resolution 54 d3en8a1 not modelled 97.5 8 Fold:Cystatin-like Superfamily:NTF2-like Family:Rpa4348-like 55 c3i0yC_ not modelled 97.4 13 PDB header:isomerase Chain: C: PDB Molecule:putative polyketide cyclase; PDBTitle: crystal structure of a putative polyketide cyclase (xcc0381) from2 xanthomonas campestris pv. campestris at 1.50 a resolution 56 c3grdA_ not modelled 97.4 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized ntf2-superfamily protein; PDBTitle: crystal structure of ntf2-superfamily protein with unknown2 function (np_977240.1) from bacillus cereus atcc 10987 at3 1.25 a resolution 57 d3dm8a1 not modelled 97.4 15 Fold:Cystatin-like Superfamily:NTF2-like Family:Rpa4348-like 58 d3dmca1 not modelled 97.4 7 Fold:Cystatin-like Superfamily:NTF2-like Family:PhzA/PhzB-like 59 d2a15a1 not modelled 97.3 11 Fold:Cystatin-like Superfamily:NTF2-like Family:Ketosteroid isomerase-like 60 c3f8hA_ not modelled 97.3 10 PDB header:unknown function Chain: A: PDB Molecule:putative polyketide cyclase; PDBTitle: crystal structure of a putative polyketide cyclase (tm1040_3560) from2 silicibacter sp. tm1040 at 2.00 a resolution 61 c3f14A_ not modelled 97.2 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized ntf2-like protein; PDBTitle: crystal structure of ntf2-like protein of unknown function2 (yp_680363.1) from cytophaga hutchinsonii atcc 33406 at 1.45 a3 resolution 62 c3g8zA_ not modelled 97.1 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein of unknown function with cystatin-like fold; PDBTitle: crystal structure of protein of unknown function with cystatin-like2 fold (np_639274.1) from xanthomonas campestris at 1.90 a resolution 63 c3msoA_ not modelled 97.1 10 PDB header:isomerase Chain: A: PDB Molecule:steroid delta-isomerase; PDBTitle: crystal structure of a steroid delta-isomerase (np_250810.1) from2 pseudomonas aeruginosa at 2.57 a resolution 64 d3ebta1 not modelled 97.0 13 Fold:Cystatin-like Superfamily:NTF2-like Family:SnoaL-like polyketide cyclase 65 c1tuhA_ not modelled 97.0 7 PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein egc068; PDBTitle: structure of bal32a from a soil-derived mobile gene cassette 66 d1tuha_ not modelled 97.0 7 Fold:Cystatin-like Superfamily:NTF2-like Family:Hypothetical protein egc068 from a soil-derived mobile gene cassette 67 c3f7xA_ not modelled 97.0 7 PDB header:unknown function Chain: A: PDB Molecule:putative polyketide cyclase; PDBTitle: crystal structure of a putative polyketide cyclase (pp0894) from2 pseudomonas putida kt2440 at 1.24 a resolution 68 c3k0zB_ not modelled 97.0 10 PDB header:lyase Chain: B: PDB Molecule:putative polyketide cyclase; PDBTitle: crystal structure of putative polyketide cyclase (np_977253.1) from2 bacillus cereus atcc 10987 at 1.91 a resolution 69 c3f8xD_ not modelled 96.9 9 PDB header:isomerase Chain: D: PDB Molecule:putative delta-5-3-ketosteroid isomerase; PDBTitle: crystal structure of a putative delta-5-3-ketosteroid isomerase2 (eca2236) from pectobacterium atrosepticum scri1043 at 1.55 a3 resolution 70 c3fh1A_ not modelled 96.8 12 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized ntf2-like protein; PDBTitle: crystal structure of a ntf2-like protein of unknown function (mll8193)2 from mesorhizobium loti at 1.60 a resolution 71 c3b4oB_ not modelled 96.7 17 PDB header:biosynthetic protein Chain: B: PDB Molecule:phenazine biosynthesis protein a/b; PDBTitle: crystal structure of phenazine biosynthesis protein phza/b2 from burkholderia cepacia r18194, apo form 72 d2k54a1 not modelled 96.7 13 Fold:Cystatin-like Superfamily:NTF2-like Family:Atu0742-like 73 d1m98a2 not modelled 96.5 15 Fold:Cystatin-like Superfamily:NTF2-like Family:Orange carotenoid protein, C-terminal domain 74 d2bnga1 not modelled 96.3 13 Fold:Cystatin-like Superfamily:NTF2-like Family:Limonene-1,2-epoxide hydrolase-like 75 c3h3hA_ not modelled 96.0 10 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized snoal-like protein; PDBTitle: crystal structure of a snoal-like protein of unknown function2 (bth_ii0226) from burkholderia thailandensis e264 at 1.60 a3 resolution 76 d2f99a1 not modelled 95.7 10 Fold:Cystatin-like Superfamily:NTF2-like Family:SnoaL-like polyketide cyclase 77 c3f40A_ not modelled 95.6 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized ntf2-like protein; PDBTitle: crystal structure of ntf2-like protein of unknown function2 (yp_677363.1) from cytophaga hutchinsonii atcc 33406 at3 1.27 a resolution 78 c3f9sB_ not modelled 94.7 12 PDB header:lyase Chain: B: PDB Molecule:putative polyketide cyclase; PDBTitle: crystal structure of a putative polyketide cyclase (lferr_0659) from2 acidithiobacillus ferrooxidans atcc at 1.76 a resolution 79 c3fljA_ not modelled 94.4 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein conserved in bacteria with a PDBTitle: crystal structure of uncharacterized protein conserved in bacteria2 with a cystatin-like fold (yp_168589.1) from silicibacter pomeroyi3 dss-3 at 2.00 a resolution 80 d2geya1 not modelled 94.3 11 Fold:Cystatin-like Superfamily:NTF2-like Family:SnoaL-like polyketide cyclase 81 d1sjwa_ not modelled 94.2 6 Fold:Cystatin-like Superfamily:NTF2-like Family:SnoaL-like polyketide cyclase 82 c3hk4B_ not modelled 92.8 13 PDB header:lyase Chain: B: PDB Molecule:mlr7391 protein; PDBTitle: crystal structure of a putative snoal-like polyketide cyclase2 [carbohydrate phosphatase] (mlr7391) from mesorhizobium loti at 1.963 a resolution 83 c3ff2A_ not modelled 89.3 6 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized cystatin fold protein (yp_497570.1) from PDBTitle: crystal structure of an uncharacterized cystatin fold protein2 (saro_2299) from novosphingobium aromaticivorans dsm at 1.90 a3 resolution 84 d2gexa1 not modelled 88.4 11 Fold:Cystatin-like Superfamily:NTF2-like Family:SnoaL-like polyketide cyclase 85 c3ehcA_ not modelled 83.3 15 PDB header:unknown function Chain: A: PDB Molecule:snoal-like polyketide cyclase; PDBTitle: crystal structure of a snoal-like polyketide cyclase (atu3018) from2 agrobacterium tumefaciens str. c58 at 2.12 a resolution 86 c3kkgA_ not modelled 75.9 13 PDB header:lyase Chain: A: PDB Molecule:putative snoal-like polyketide cyclase; PDBTitle: crystal structure of putative snoal-like polyketide cyclase2 (yp_509242.1) from jannaschia sp. ccs1 at 1.40 a resolution 87 c1m98A_ not modelled 75.8 8 PDB header:unknown function Chain: A: PDB Molecule:orange carotenoid protein; PDBTitle: crystal structure of orange carotenoid protein 88 d3dxoa1 not modelled 52.2 13 Fold:Cystatin-like Superfamily:NTF2-like Family:Atu0744-like 89 c3g0kA_ not modelled 43.4 14 PDB header:ca-binding protein Chain: A: PDB Molecule:putative membrane protein; PDBTitle: crystal structure of a protein of unknown function with a cystatin-2 like fold (saro_2880) from novosphingobium aromaticivorans dsm at3 1.30 a resolution 90 d1gy7a_ not modelled 40.0 12 Fold:Cystatin-like Superfamily:NTF2-like Family:NTF2-like 91 d1jkgb_ not modelled 39.1 10 Fold:Cystatin-like Superfamily:NTF2-like Family:NTF2-like 92 d1q40b_ not modelled 33.8 10 Fold:Cystatin-like Superfamily:NTF2-like Family:NTF2-like 93 d1zo2a1 not modelled 19.3 8 Fold:Cystatin-like Superfamily:NTF2-like Family:NTF2-like 94 c3l4qA_ not modelled 18.7 21 PDB header:viral protein/protein binding Chain: A: PDB Molecule:non-structural protein 1; PDBTitle: structural insights into phosphoinositide 3-kinase2 activation by the influenza a virus ns1 protein 95 d2gx9a1 not modelled 17.9 21 Fold:Ns1 effector domain-like Superfamily:Ns1 effector domain-like Family:Ns1 effector domain-like 96 d1gy6a_ not modelled 17.7 17 Fold:Cystatin-like Superfamily:NTF2-like Family:NTF2-like 97 c2qz7B_ not modelled 17.4 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein sco6318; PDBTitle: the crystal structure of a homologue of telluride resistance protein2 (terd), sco6318 from streptomyces coelicolor a3(2) 98 d1t6sa1 not modelled 13.0 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ScpB/YpuH-like 99 c3f5tA_ not modelled 12.7 21 PDB header:viral protein Chain: A: PDB Molecule:nonstructural protein 1; PDBTitle: x-ray structure of h5n1 ns1

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0