11/01/2012 03:00:18 : INFO  : Run start: Wed Jan 11 03:00:18 GMT 2012
11/01/2012 03:00:21 : INFO  : Initialised job
11/01/2012 03:00:22 : INFO  : Renaming log file 'phyre2_20120111_030017.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/5f77e12444d7f585/phyre_20120111_030017.log'
11/01/2012 03:00:22 : INFO  : Initialised job:
Sequence
>batch____
MTVTRPRAERGAFPPGTEHYGRSLLGAPLIWFPAPAASRESGLILAGTHGDENSSVVTLS
CALRTLTPSLRRHHVVLCVNPDGCQLGLRANANGVDLNRNFPAANWKEGETVYRWNSAAE
ERDVVLLTGDKPGSEPETQALCQLIHRIQPAWVVSFHDPLACIEDPRHSELGEWLAQAFE
LPLVTSVGYETPGSFGSWCADLNLHCITAEFPPISSDEASEKYLFAMANLLRWHPKDAIR
PS

11/01/2012 03:00:23 : INFO  : Checked sequence
11/01/2012 03:00:24 : INFO  : Finding homologues with PSI-BLAST
11/01/2012 03:00:25 : INFO  : PSI-BLAST 3 iterations
11/01/2012 03:01:44 : INFO  : PSI-BLAST 5 iterations
11/01/2012 03:03:22 : INFO  : Finished PSI-BLAST
11/01/2012 03:03:23 : INFO  : Running Buildali to generate a3m file
11/01/2012 03:07:59 : INFO  : Converting to HMM
11/01/2012 03:08:01 : INFO  : Calibrating HMM
11/01/2012 03:08:10 : INFO  : Searching HMM database
11/01/2012 03:12:39 : INFO  : Finished buildali
11/01/2012 03:12:40 : INFO  : Predicting secondary structure
11/01/2012 03:12:47 : INFO  : Predicted secondary structure (PSI-Pred)
11/01/2012 03:12:48 : INFO  : Predicting Disordered regions
11/01/2012 03:12:50 : INFO  : Predicted Disorder (Disopred)
11/01/2012 03:12:51 : INFO  : Running memsat_svm check
11/01/2012 03:15:03 : INFO  : Globular protein
11/01/2012 03:15:04 : INFO  : Predicted Transmembrane (memsat_svm) ID '5f77e12444d7f585'
11/01/2012 03:15:05 : INFO  : Initialising fold library search
11/01/2012 03:15:07 : INFO  : Initialised search input
11/01/2012 03:15:09 : INFO  : Building Ensemble models
11/01/2012 03:15:11 : INFO  : Building hh.c3dgvB_.model.1.pdb
11/01/2012 03:15:23 : INFO  : Building hh.c2nsmA_.model.2.pdb
11/01/2012 03:15:31 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/5f77e12444d7f585/hh.c2nsmA_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/5f77e12444d7f585/c2nsmA_.2.pdb
11/01/2012 03:15:33 : INFO  : Building hh.c1ayeA_.model.3.pdb
11/01/2012 03:15:41 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/5f77e12444d7f585/hh.c1ayeA_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/5f77e12444d7f585/c1ayeA_.3.pdb
11/01/2012 03:15:44 : INFO  : Building hh.c2boaB_.model.4.pdb
11/01/2012 03:15:52 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/5f77e12444d7f585/hh.c2boaB_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/5f77e12444d7f585/c2boaB_.4.pdb
11/01/2012 03:15:55 : INFO  : Building hh.c1nsaA_.model.5.pdb
11/01/2012 03:16:03 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/5f77e12444d7f585/hh.c1nsaA_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/5f77e12444d7f585/c1nsaA_.5.pdb
11/01/2012 03:16:06 : INFO  : Building hh.c1jqgA_.model.6.pdb
11/01/2012 03:16:15 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/5f77e12444d7f585/hh.c1jqgA_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/5f77e12444d7f585/c1jqgA_.6.pdb
11/01/2012 03:16:17 : INFO  : Building hh.c1cpbA_.model.7.pdb
11/01/2012 03:16:23 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/5f77e12444d7f585/hh.c1cpbA_.model.7.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/5f77e12444d7f585/c1cpbA_.38.pdb
11/01/2012 03:16:25 : INFO  : Building c3dgvB_.1.pdb
11/01/2012 03:16:34 : INFO  : Building c2nsmA_.2.pdb
11/01/2012 03:16:42 : INFO  : Building c1ayeA_.3.pdb
11/01/2012 03:16:51 : INFO  : Building c2boaB_.4.pdb
11/01/2012 03:16:58 : INFO  : Building c1nsaA_.5.pdb
11/01/2012 03:17:06 : INFO  : Building c1jqgA_.6.pdb
11/01/2012 03:17:14 : INFO  : Building c1uwyA_.7.pdb
11/01/2012 03:17:22 : INFO  : Building c1h8lA_.8.pdb
11/01/2012 03:17:30 : INFO  : Building c3mn8A_.9.pdb
11/01/2012 03:17:38 : INFO  : Building d1ayea1.10.pdb
11/01/2012 03:17:46 : INFO  : Building d1nsaa1.11.pdb
11/01/2012 03:17:54 : INFO  : Building d1uwya2.12.pdb
11/01/2012 03:18:02 : INFO  : Building d1obra_.13.pdb
11/01/2012 03:18:09 : INFO  : Building d1kwma1.14.pdb
11/01/2012 03:18:16 : INFO  : Building d1jqga1.15.pdb
11/01/2012 03:18:24 : INFO  : Building d1z5ra1.16.pdb
11/01/2012 03:18:32 : INFO  : Building d1m4la_.17.pdb
11/01/2012 03:18:39 : INFO  : Building d2bo9a1.18.pdb
11/01/2012 03:18:47 : INFO  : Building c3d4uA_.19.pdb
11/01/2012 03:18:55 : INFO  : Building d2c1ca1.20.pdb
11/01/2012 03:20:08 : INFO  : Finished HH model building
11/01/2012 03:20:08 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
11/01/2012 03:20:53 : INFO  : html domain output complete ID '5f77e12444d7f585'
11/01/2012 04:27:00 : INFO  : Run end  : Wed Jan 11 04:26:58 GMT 2012
