18/01/2012 12:05:03 : INFO  : Run start: Wed Jan 18 12:05:01 GMT 2012
18/01/2012 12:05:13 : INFO  : Initialised job
18/01/2012 12:05:16 : INFO  : Renaming log file 'phyre2_20120118_120500.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/5f73ed93e5dd5bc4/phyre_20120118_120500.log'
18/01/2012 12:05:18 : INFO  : Initialised job:
Sequence
>batch____
MTDSELMQLSEQVGQALKARGATVTTAESCTGGWVAKVITDIAGSSAWFERGFVTYSNEA
KAQMIGVREETLAQHGAVSEPVVVEMAIGALKAARADYAVSISGIAGPDGGSEEKPVGTV
WFAFATARGEGITRRECFSGDRDAVRRQATAYALQTLWQQFLQNT

18/01/2012 12:05:19 : INFO  : Checked sequence
18/01/2012 12:05:26 : INFO  : Finding homologues with PSI-BLAST
18/01/2012 12:05:27 : INFO  : PSI-BLAST 3 iterations
18/01/2012 12:07:00 : INFO  : PSI-BLAST 5 iterations
18/01/2012 12:08:34 : INFO  : Finished PSI-BLAST
18/01/2012 12:08:38 : INFO  : Running Buildali to generate a3m file
18/01/2012 12:16:57 : INFO  : Converting to HMM
18/01/2012 12:17:02 : INFO  : Calibrating HMM
18/01/2012 12:17:22 : INFO  : Searching HMM database
18/01/2012 12:20:53 : INFO  : Finished buildali
18/01/2012 12:20:58 : INFO  : Predicting secondary structure
18/01/2012 12:21:15 : INFO  : Predicted secondary structure (PSI-Pred)
18/01/2012 12:21:19 : INFO  : Predicting Disordered regions
18/01/2012 12:21:28 : INFO  : Predicted Disorder (Disopred)
18/01/2012 12:21:32 : INFO  : Running memsat_svm check
18/01/2012 12:25:43 : INFO  : Running memsat_svm full
18/01/2012 12:28:39 : INFO  : Predicted Transmembrane (memsat_svm) ID '5f73ed93e5dd5bc4'
18/01/2012 12:28:43 : INFO  : Initialising fold library search
18/01/2012 12:28:50 : INFO  : Initialised search input
18/01/2012 12:28:56 : INFO  : Building Ensemble models
18/01/2012 12:29:04 : INFO  : Building hh.d2a9sa1.model.1.pdb
18/01/2012 12:29:38 : INFO  : Building d2a9sa1.1.pdb
18/01/2012 12:30:07 : INFO  : Building d1pzna1.2.pdb
18/01/2012 12:30:35 : INFO  : Building d2i1qa1.3.pdb
18/01/2012 12:31:04 : INFO  : Building c3b33A_.4.pdb
18/01/2012 12:31:31 : INFO  : Building c3a9lB_.5.pdb
18/01/2012 12:31:58 : INFO  : Building d1mzua_.6.pdb
18/01/2012 12:32:25 : INFO  : Building d1xjca_.7.pdb
18/01/2012 12:32:54 : INFO  : Building d1v9ya_.8.pdb
18/01/2012 12:33:20 : INFO  : Building c1v9yA_.9.pdb
18/01/2012 12:33:47 : INFO  : Building c3mfxA_.10.pdb
18/01/2012 12:34:15 : INFO  : Building d2bgwa1.11.pdb
18/01/2012 12:34:41 : INFO  : Building c3ju7B_.12.pdb
18/01/2012 12:35:08 : INFO  : Building d3proc1.13.pdb
18/01/2012 12:35:35 : INFO  : Building c1zpdA_.14.pdb
18/01/2012 12:36:04 : INFO  : Building d1nwza_.15.pdb
18/01/2012 12:36:34 : INFO  : Building c1kftA_.16.pdb
18/01/2012 12:37:00 : INFO  : Building d1kfta_.17.pdb
18/01/2012 12:37:27 : INFO  : Building d1a4ia1.18.pdb
18/01/2012 12:37:53 : INFO  : Building c3a0vA_.19.pdb
18/01/2012 12:38:20 : INFO  : Building c2w1tB_.20.pdb
18/01/2012 12:39:20 : INFO  : Finished HH model building
18/01/2012 12:39:24 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
18/01/2012 12:40:32 : INFO  : html domain output complete ID '5f73ed93e5dd5bc4'
18/01/2012 12:49:58 : INFO  : Run end  : Wed Jan 18 12:49:56 GMT 2012
