BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (106 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q2EEQ3 Putative uncharacterized protein yahH n=20 Tax=E... 202 2e-51 UniRef50_UPI0001C34167 hypothetical protein CATC2_22045 n=1 Tax=... 49 5e-05 UniRef50_C3XT94 Putative uncharacterized protein n=1 Tax=Branchi... 43 0.002 UniRef50_A7ZVD9 Putative uncharacterized protein n=2 Tax=Escheri... 42 0.006 UniRef50_B7N9I9 Phosphopantetheinyltransferase component of ente... 41 0.010 UniRef50_B5YQM5 Phosphopantetheinyltransferase component of ente... 39 0.036 >UniRef50_Q2EEQ3 Putative uncharacterized protein yahH n=20 Tax=Escherichia coli RepID=YAHH_ECOLI Length = 106 Score = 202 bits (515), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 106/106 (100%), Positives = 106/106 (100%) Query: 1 MNALSGLRMAQESVGLISVAHQAFVTIAGCGVNALSGLRMAQESVGLISVAHQAFATTAG 60 MNALSGLRMAQESVGLISVAHQAFVTIAGCGVNALSGLRMAQESVGLISVAHQAFATTAG Sbjct: 1 MNALSGLRMAQESVGLISVAHQAFVTIAGCGVNALSGLRMAQESVGLISVAHQAFATTAG 60 Query: 61 CGVDALSGLRVARESVGLISVAHQAFVTIAGCGVNALSGLRVAREL 106 CGVDALSGLRVARESVGLISVAHQAFVTIAGCGVNALSGLRVAREL Sbjct: 61 CGVDALSGLRVARESVGLISVAHQAFVTIAGCGVNALSGLRVAREL 106 >UniRef50_UPI0001C34167 hypothetical protein CATC2_22045 n=1 Tax=Citrobacter youngae ATCC 29220 RepID=UPI0001C34167 Length = 122 Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 38/90 (42%), Positives = 43/90 (47%), Gaps = 20/90 (22%) Query: 12 ESVGLISVAHQAFVTIAGCGVNALSGLRMAQESVGLISVAHQAFATTAGCGVDALSGLRV 71 SVGLIS AHQAF+ G SVGLIS AHQAF G GL+ Sbjct: 14 HSVGLISCAHQAFMPDGG---------HNGAHSVGLISEAHQAFMPDGGHNSAHSVGLKA 64 Query: 72 ARESVGLISVAHQAFVTIAGCGVNALSGLR 101 AR + H AGCG +ALSGL+ Sbjct: 65 AR-------IRH----FFAGCGASALSGLQ 83 >UniRef50_C3XT94 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3XT94_BRAFL Length = 230 Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/103 (35%), Positives = 57/103 (55%), Gaps = 17/103 (16%) Query: 4 LSGLRMAQES-VGLISVAHQAFVTIAGCGVNALSGLRMAQES-VGLISVAHQAFATTAGC 61 LSGL + + + +GL+ ++ V +AG G+ LSGLR+ + S +GL+ +A G Sbjct: 96 LSGLGLVELAGLGLVELSGLVLVELAGFGLVELSGLRLVELSGLGLVELA--------GL 147 Query: 62 GVDALSGLRVARESVGLISVAHQAFVTIAGCGVNALSGLRVAR 104 G+ LSGL GL+ +A V +AG G+ LSGLR+ Sbjct: 148 GLVELSGL-------GLVELAGLGLVELAGLGLVELSGLRLVE 183 >UniRef50_A7ZVD9 Putative uncharacterized protein n=2 Tax=Escherichia RepID=A7ZVD9_ECO24 Length = 77 Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust. Identities = 41/80 (51%), Positives = 44/80 (55%), Gaps = 8/80 (10%) Query: 1 MNALSGLRMAQESVGLISVAHQA--FVTIAGCGVNALSGLRMAQESVGLI---SVAHQAF 55 MNALS L + E VGLI A A I GCG+NALS L + E VGLI SVA Sbjct: 1 MNALSDLH-STELVGLIRRASVASGNAVIVGCGMNALSDLH-STELVGLIRRGSVA-SGN 57 Query: 56 ATTAGCGVDALSGLRVARES 75 A GCGV ALS L A S Sbjct: 58 AVIVGCGVSALSDLHTALNS 77 >UniRef50_B7N9I9 Phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex n=45 Tax=Enterobacteriaceae RepID=B7N9I9_ECOLU Length = 256 Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust. Identities = 22/33 (66%), Positives = 25/33 (75%), Gaps = 6/33 (18%) Query: 28 AGCGVNALSGLRMA------QESVGLISVAHQA 54 AGCGVNALSGL+ + Q+ VGLISVAHQA Sbjct: 6 AGCGVNALSGLQKSCQFNILQDHVGLISVAHQA 38 >UniRef50_B5YQM5 Phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex n=7 Tax=Escherichia coli O157:H7 RepID=B5YQM5_ECO5E Length = 64 Score = 39.3 bits (90), Expect = 0.036, Method: Compositional matrix adjust. Identities = 21/36 (58%), Positives = 26/36 (72%), Gaps = 6/36 (16%) Query: 25 VTIAGCGVNALSGLR------MAQESVGLISVAHQA 54 + +AGCGVNALSGL+ ++ VGLISVAHQA Sbjct: 28 IFLAGCGVNALSGLQKHANSIYCRDHVGLISVAHQA 63 Score = 38.5 bits (88), Expect = 0.075, Method: Compositional matrix adjust. Identities = 21/33 (63%), Positives = 24/33 (72%), Gaps = 6/33 (18%) Query: 59 AGCGVDALSGLR------VARESVGLISVAHQA 85 AGCGV+ALSGL+ R+ VGLISVAHQA Sbjct: 31 AGCGVNALSGLQKHANSIYCRDHVGLISVAHQA 63 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q2EEQ3 Putative uncharacterized protein yahH n=20 Tax=E... 123 1e-27 UniRef50_UPI0001C34167 hypothetical protein CATC2_22045 n=1 Tax=... 84 9e-16 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_Q2EEQ3 Putative uncharacterized protein yahH n=20 Tax=Escherichia coli RepID=YAHH_ECOLI Length = 106 Score = 123 bits (309), Expect = 1e-27, Method: Composition-based stats. Identities = 106/106 (100%), Positives = 106/106 (100%) Query: 1 MNALSGLRMAQESVGLISVAHQAFVTIAGCGVNALSGLRMAQESVGLISVAHQAFATTAG 60 MNALSGLRMAQESVGLISVAHQAFVTIAGCGVNALSGLRMAQESVGLISVAHQAFATTAG Sbjct: 1 MNALSGLRMAQESVGLISVAHQAFVTIAGCGVNALSGLRMAQESVGLISVAHQAFATTAG 60 Query: 61 CGVDALSGLRVARESVGLISVAHQAFVTIAGCGVNALSGLRVAREL 106 CGVDALSGLRVARESVGLISVAHQAFVTIAGCGVNALSGLRVAREL Sbjct: 61 CGVDALSGLRVARESVGLISVAHQAFVTIAGCGVNALSGLRVAREL 106 >UniRef50_UPI0001C34167 hypothetical protein CATC2_22045 n=1 Tax=Citrobacter youngae ATCC 29220 RepID=UPI0001C34167 Length = 122 Score = 84.5 bits (207), Expect = 9e-16, Method: Composition-based stats. Identities = 38/90 (42%), Positives = 43/90 (47%), Gaps = 20/90 (22%) Query: 12 ESVGLISVAHQAFVTIAGCGVNALSGLRMAQESVGLISVAHQAFATTAGCGVDALSGLRV 71 SVGLIS AHQAF+ G SVGLIS AHQAF G GL+ Sbjct: 14 HSVGLISCAHQAFMPDGG---------HNGAHSVGLISEAHQAFMPDGGHNSAHSVGLKA 64 Query: 72 ARESVGLISVAHQAFVTIAGCGVNALSGLR 101 AR + H AGCG +ALSGL+ Sbjct: 65 AR-------IRH----FFAGCGASALSGLQ 83 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.322 0.122 0.323 Lambda K H 0.267 0.0380 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 314,833,377 Number of Sequences: 3077464 Number of extensions: 9075680 Number of successful extensions: 27596 Number of sequences better than 1.0e-01: 2 Number of HSP's better than 0.1 without gapping: 4 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 27481 Number of HSP's gapped (non-prelim): 64 length of query: 106 length of database: 1,040,396,356 effective HSP length: 74 effective length of query: 32 effective length of database: 812,664,020 effective search space: 26005248640 effective search space used: 26005248640 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.1 bits) S2: 87 (38.2 bits)