Phyre 2 alignment of P64508 with c3u21B_

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Job Description | P64508
Confidence | 0.77% | Date | Thu Jan 5 12:09:02 GMT 2012
Rank | 79 | Aligned Residues | 21
% Identity | 24% | Template | c3u21B_
PDB info | PDB header:transcription regulation, dna binding | Chain: B: PDB Molecule:nuclear factor related to kappa-b-binding protein; | PDBTitle: crystal structure of a fragment of nuclear factor related to kappa-b-2 binding protein (residues 370-495) (nfrkb) from homo sapiens at 2.183 a resolution
Resolution | 2.18 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 16 | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Query Sequence |  | V | E | Y | R | F | S | A | E | P | Y | I | G | A | S | C | S | N | V | S | V | L | S | M | L | C
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  | . | . |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  | . | . |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |
Template Sequence |  | V | E | F | E | T | Q | . | . | Q | W | L | L | S | . | . | Q | D | N | E | E | L | A | A | L | F
Template Known Secondary structure |  |  |  |  |  |  |  | . | . |  |  |  |  |  | . | . | T | T | T |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  | . | . |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 449 | 450 | . | . | . | . |  |  | . | . | . | . | . |  |  | 460 | . | . | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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