217 d2hoxa1 Probab=99.87   E-value=1.4e-19  Score=136.96  Aligned_columns=281  Identities=14%

Q ss_pred             HHHHHHHHHHCCC------CHHHEEEECCHHHHHHHHHHHHHHCCCCCCCE--------EEEECCCCHHHHHHHHHHHHC
Q ss_conf             9999999997387------97679997888999999999998414777633--------674167640367899998733
Q batch____        52 DIARNQIADLVGA------DPREIVFTSGATESDNLAIKGAANFYQKKGKH--------IITSKTEHKAVLDTCRQLERE  117 (404)
Q Consensus        52 ~~~r~~iA~~~g~------~~~~V~~~~~gt~A~~~ai~~~~~~~~~~~~~--------i~~~~~~~~s~~~~~~~~~~~  117 (404)
                      ..+++.|+++.+.      ++.+|+||+|+|+++++++.++    .++||.        +++....|+.+.......+..
T Consensus       103 ~~L~~~i~~l~~~~g~~~~~~~~iv~t~G~~~~l~~a~~aL----~~pGd~v~~~~p~~v~~~~p~y~~~~~~~~~~~~~  178 (425)
T d2hoxa1         103 FELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISL----SPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKK  178 (425)
T ss_dssp             HHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHH----SCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCCT
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHH----CCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCC
T ss_conf             89999999998850886788776999468899999999986----48886123567743573002377899999855997


Q ss_pred             CCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHCCC
Q ss_conf             97689951787545897885553200234421344443443035788777510157279995055224445566166298
Q batch____       118 GFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKV  197 (404)
Q Consensus       118 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  197 (404)
                      ...+..         |.+....+....+..+.+++|+||+|...+       +.+++++++.|+++............+.
T Consensus       179 ~~~~~~---------d~~~~~~~~~~~~~~~~i~~P~NPtG~v~~-------a~~~~~~~i~De~y~~~~~~~~~~~~~~  242 (425)
T d2hoxa1         179 GYVWAG---------NAANYVNVSNPEQYIEMVTSPNNPEGLLRH-------AVIKGCKSIYDMVYYWPHYTPIKYKADE  242 (425)
T ss_dssp             TEEEEE---------EGGGGTTCSCGGGEEEEEESSCTTTCCCCC-------CSSTTCEEEEECTTCSTTTSCCCSCBCC
T ss_pred             CCCCCC---------CHHHHHHHCCCCCEEEEECCCCCCCCEEEE-------EEECCCEEEEECCCCCCCCCCCCCCCCC
T ss_conf             444247---------988999724888579998178888560654-------2323968997143234332333345685


Q ss_pred             EEEECCHHHHCCCCC--CEEEEEC-HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH----------HHCCCHH
Q ss_conf             126316044057887--2899988-89997535762267555433576533899998554444----------3115989
Q batch____       198 DLMSFSGHKIYGPKG--IGALYVR-RKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYR----------IAKEEMA  264 (404)
Q Consensus       198 ~~~~~s~~K~~~~~g--~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~~~~~----------~~~~~~~  264 (404)
                      ++++.|++|.++.+|  +||++++ +++.+.+...........      +...+..+......          ......+
T Consensus       243 ~i~~~S~SK~~g~~GlRiG~~i~~~~~i~~~l~~~~~~~~~~~------s~~~Q~aA~~~L~~~~~~~~~~~~~~~~~~~  316 (425)
T d2hoxa1         243 DILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGT------PRETQLRSLKVLKEVVAMVKTQKGTMRDLNT  316 (425)
T ss_dssp             SEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSC------CHHHHHHHHHHHHHHHHHHHHHTTSTTSHHH
T ss_pred             EEEEEECCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCC------CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf             4999815510123323101899689899999998641057773------6899999999960201345655554899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEE-------------CCCCCCCCCEEEEEEECCCCHHHHHHHHCCCEEEEEHHHCCC
Q ss_conf             9999999999999999972899647-------------467666645189998079998999997519577420000331
Q batch____       265 TEMERLRGLRNRLWNGIKDIEEVYL-------------NGDLEHGAPNILNVSFNYVEGESLIMALKDLAVSSGSACTSA  331 (404)
Q Consensus       265 ~~~~~~~~~~~~~~~~L~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~v~~g~~~~~~  331 (404)
                      ..++.+.++.+.+.+.|...+...+             ...+....+.++.+...........+..+++.+++|..|.  
T Consensus       317 ~~r~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~~~~~~~~~~~~f~w~~~~~~~~~~~~~lL~e~GI~v~pGs~FG--  394 (425)
T d2hoxa1         317 FGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFE--  394 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGGGCSHHHHHHHTTEECEEGGGGT--
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCEEEECCCCCC--
T ss_conf             999999999999999986357630034565543221001377876169986789808999999996694997170238--


Q ss_pred             CCHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             10145789874998333698799977888899999999999999999
Q batch____       332 SLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIG  378 (404)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~edid~~i~~L~~~l~  378 (404)
                                      ..++.||||+.  +++|++|+++++|+++++
T Consensus       395 ----------------~~~~~vRiSl~--~~~e~ld~~l~rL~~~v~  423 (425)
T d2hoxa1         395 ----------------ASSRYVRLSLI--KTQDDFDQLMYYLKDMVK  423 (425)
T ss_dssp             ----------------SCTTEEEEECS--SCHHHHHHHHHHHHHHHT
T ss_pred             ----------------CCCCEEEEEEC--CCHHHHHHHHHHHHHHHH
T ss_conf             ----------------98865999913--998999999999999872