BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (234 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P75968 Uncharacterized protein ymfE n=2 Tax=Escherichia... 335 6e-91 UniRef50_B7LHM0 Putative uncharacterized protein n=3 Tax=Enterob... 316 3e-85 UniRef50_Q1QNM5 Putative uncharacterized protein n=1 Tax=Nitroba... 207 3e-52 UniRef50_Q89TW4 Blr1659 protein n=1 Tax=Bradyrhizobium japonicum... 153 4e-36 >UniRef50_P75968 Uncharacterized protein ymfE n=2 Tax=Escherichia coli RepID=YMFE_ECOLI Length = 234 Score = 335 bits (860), Expect = 6e-91, Method: Composition-based stats. Identities = 234/234 (100%), Positives = 234/234 (100%) Query: 1 MNNMFEPPKNYNEMLPKLHKATFLNTLIYCILLVIYEYIPLITLPTKYVPPIKDHESFIN 60 MNNMFEPPKNYNEMLPKLHKATFLNTLIYCILLVIYEYIPLITLPTKYVPPIKDHESFIN Sbjct: 1 MNNMFEPPKNYNEMLPKLHKATFLNTLIYCILLVIYEYIPLITLPTKYVPPIKDHESFIN 60 Query: 61 WALSFGILPCAFAIFAYLISGALDLHNNAAKLLRVRYLWDKHLIIKPLSRRAGVNRKLNK 120 WALSFGILPCAFAIFAYLISGALDLHNNAAKLLRVRYLWDKHLIIKPLSRRAGVNRKLNK Sbjct: 61 WALSFGILPCAFAIFAYLISGALDLHNNAAKLLRVRYLWDKHLIIKPLSRRAGVNRKLNK 120 Query: 121 DEAHNVMSNLYYPEVRKIEDKHYIELFWNKVYYFWIFFEFSIIALISFLIIFFCKQMDIF 180 DEAHNVMSNLYYPEVRKIEDKHYIELFWNKVYYFWIFFEFSIIALISFLIIFFCKQMDIF Sbjct: 121 DEAHNVMSNLYYPEVRKIEDKHYIELFWNKVYYFWIFFEFSIIALISFLIIFFCKQMDIF 180 Query: 181 HVEGSLLSLFFFVILSFSVSGIIFALTVKPRTESQVGKIPDDKIKEFFTKNNIN 234 HVEGSLLSLFFFVILSFSVSGIIFALTVKPRTESQVGKIPDDKIKEFFTKNNIN Sbjct: 181 HVEGSLLSLFFFVILSFSVSGIIFALTVKPRTESQVGKIPDDKIKEFFTKNNIN 234 >UniRef50_B7LHM0 Putative uncharacterized protein n=3 Tax=Enterobacteriaceae RepID=B7LHM0_ECO55 Length = 235 Score = 316 bits (811), Expect = 3e-85, Method: Composition-based stats. Identities = 139/232 (59%), Positives = 181/232 (78%) Query: 2 NNMFEPPKNYNEMLPKLHKATFLNTLIYCILLVIYEYIPLITLPTKYVPPIKDHESFINW 61 + M EPPK+YNEMLP LHKATF+ T I+ + LVIY Y+PL+ + KY+PP+KD+E FI W Sbjct: 3 SKMLEPPKSYNEMLPMLHKATFITTFIFYLSLVIYGYMPLVGINAKYIPPVKDYEEFIKW 62 Query: 62 ALSFGILPCAFAIFAYLISGALDLHNNAAKLLRVRYLWDKHLIIKPLSRRAGVNRKLNKD 121 L+FGILP A ++F +ISGALDLHNN AK++ +R +WD HLIIKPL++ AGV RKL D Sbjct: 63 ILTFGILPIASSVFWSVISGALDLHNNVAKIIGIRKMWDSHLIIKPLAKIAGVTRKLTTD 122 Query: 122 EAHNVMSNLYYPEVRKIEDKHYIELFWNKVYYFWIFFEFSIIALISFLIIFFCKQMDIFH 181 E+H VMS LYYPEV++++DKHY+ELFWNKVYYFW+FFE ++IA ++ LII K +IF Sbjct: 123 ESHKVMSKLYYPEVKELKDKHYVELFWNKVYYFWVFFEHTVIAFVTILIISIAKLTNIFS 182 Query: 182 VEGSLLSLFFFVILSFSVSGIIFALTVKPRTESQVGKIPDDKIKEFFTKNNI 233 V GSL++L+ ++I + +IF +VKPRTESQV +IPD KIKEFF NNI Sbjct: 183 VTGSLINLWLWIISLVAFDFLIFIASVKPRTESQVRQIPDSKIKEFFNNNNI 234 >UniRef50_Q1QNM5 Putative uncharacterized protein n=1 Tax=Nitrobacter hamburgensis X14 RepID=Q1QNM5_NITHX Length = 246 Score = 207 bits (526), Expect = 3e-52, Method: Composition-based stats. Identities = 46/192 (23%), Positives = 87/192 (45%), Gaps = 24/192 (12%) Query: 8 PKNYNEMLPKLHKATFLNTLIYCILLVIYEYIPLITLPTKYVPPIKDHESFINWALSFGI 67 PKNY+EML K+ A F TL L ++ + +++P K+ + + A + Sbjct: 14 PKNYSEMLWKIALADFWLTLACTFLARQDPWVESLFSQIEHLPGFKEFATAVK-APEINV 72 Query: 68 LPCAFAIFAYLISGALDLHNNAAKLLRVRYLWDKHLIIKPLSRRAGVN------RKLNKD 121 A A+ + S H+ + ++R +D+ I+ PL+ +GV + L +D Sbjct: 73 GGFAIALAVLIFSRVTHFHDRISDFFKIRARFDRANILLPLAVMSGVQMTARQIQNLERD 132 Query: 122 EAHNVMSNLYYP-----EVRKIEDKHYIE-------LFWNKVYYFWIFFEFSIIALIS-- 167 H +M +Y + + DKH IE ++W + +F+I F+I++ I+ Sbjct: 133 R-HPLMRGTFYKYASSRSEKPLVDKHDIESALEAWHMYWVALEWFFILTGFAILSAIARS 191 Query: 168 --FLIIFFCKQM 177 L++F+ M Sbjct: 192 SWLLVVFWVASM 203 >UniRef50_Q89TW4 Blr1659 protein n=1 Tax=Bradyrhizobium japonicum RepID=Q89TW4_BRAJA Length = 342 Score = 153 bits (388), Expect = 4e-36, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 52/124 (41%), Gaps = 13/124 (10%) Query: 33 LVIYEYIPLITLPTKYVPPIKDHESFINWALSFGILPCAFAIFAYLISGALDLHNNAAKL 92 + +I + L +++P +K+ + I A + A A+ + S H+ + + Sbjct: 1 MRYDPWINGLFLRVEHLPGVKEFATAIK-APEVNVGGFALALLVLIFSRVTRFHDRISDI 59 Query: 93 LRVRYLWDKHLIIKPLSRRAGVNR------KLNKDEAHNVMSNLYYP-----EVRKIEDK 141 ++R +D+ I+ PL+ +G L +D H ++ +Y + DK Sbjct: 60 FKIRARFDRANILLPLAVMSGAQMSARQVANLKRDR-HPLVRATFYKYASSRSEHPLVDK 118 Query: 142 HYIE 145 H IE Sbjct: 119 HDIE 122 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P75968 Uncharacterized protein ymfE n=2 Tax=Escherichia... 335 6e-91 UniRef50_B7LHM0 Putative uncharacterized protein n=3 Tax=Enterob... 316 3e-85 UniRef50_Q1QNM5 Putative uncharacterized protein n=1 Tax=Nitroba... 207 3e-52 UniRef50_Q89TW4 Blr1659 protein n=1 Tax=Bradyrhizobium japonicum... 153 4e-36 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_P75968 Uncharacterized protein ymfE n=2 Tax=Escherichia coli RepID=YMFE_ECOLI Length = 234 Score = 335 bits (860), Expect = 6e-91, Method: Composition-based stats. Identities = 234/234 (100%), Positives = 234/234 (100%) Query: 1 MNNMFEPPKNYNEMLPKLHKATFLNTLIYCILLVIYEYIPLITLPTKYVPPIKDHESFIN 60 MNNMFEPPKNYNEMLPKLHKATFLNTLIYCILLVIYEYIPLITLPTKYVPPIKDHESFIN Sbjct: 1 MNNMFEPPKNYNEMLPKLHKATFLNTLIYCILLVIYEYIPLITLPTKYVPPIKDHESFIN 60 Query: 61 WALSFGILPCAFAIFAYLISGALDLHNNAAKLLRVRYLWDKHLIIKPLSRRAGVNRKLNK 120 WALSFGILPCAFAIFAYLISGALDLHNNAAKLLRVRYLWDKHLIIKPLSRRAGVNRKLNK Sbjct: 61 WALSFGILPCAFAIFAYLISGALDLHNNAAKLLRVRYLWDKHLIIKPLSRRAGVNRKLNK 120 Query: 121 DEAHNVMSNLYYPEVRKIEDKHYIELFWNKVYYFWIFFEFSIIALISFLIIFFCKQMDIF 180 DEAHNVMSNLYYPEVRKIEDKHYIELFWNKVYYFWIFFEFSIIALISFLIIFFCKQMDIF Sbjct: 121 DEAHNVMSNLYYPEVRKIEDKHYIELFWNKVYYFWIFFEFSIIALISFLIIFFCKQMDIF 180 Query: 181 HVEGSLLSLFFFVILSFSVSGIIFALTVKPRTESQVGKIPDDKIKEFFTKNNIN 234 HVEGSLLSLFFFVILSFSVSGIIFALTVKPRTESQVGKIPDDKIKEFFTKNNIN Sbjct: 181 HVEGSLLSLFFFVILSFSVSGIIFALTVKPRTESQVGKIPDDKIKEFFTKNNIN 234 >UniRef50_B7LHM0 Putative uncharacterized protein n=3 Tax=Enterobacteriaceae RepID=B7LHM0_ECO55 Length = 235 Score = 316 bits (811), Expect = 3e-85, Method: Composition-based stats. Identities = 139/232 (59%), Positives = 181/232 (78%) Query: 2 NNMFEPPKNYNEMLPKLHKATFLNTLIYCILLVIYEYIPLITLPTKYVPPIKDHESFINW 61 + M EPPK+YNEMLP LHKATF+ T I+ + LVIY Y+PL+ + KY+PP+KD+E FI W Sbjct: 3 SKMLEPPKSYNEMLPMLHKATFITTFIFYLSLVIYGYMPLVGINAKYIPPVKDYEEFIKW 62 Query: 62 ALSFGILPCAFAIFAYLISGALDLHNNAAKLLRVRYLWDKHLIIKPLSRRAGVNRKLNKD 121 L+FGILP A ++F +ISGALDLHNN AK++ +R +WD HLIIKPL++ AGV RKL D Sbjct: 63 ILTFGILPIASSVFWSVISGALDLHNNVAKIIGIRKMWDSHLIIKPLAKIAGVTRKLTTD 122 Query: 122 EAHNVMSNLYYPEVRKIEDKHYIELFWNKVYYFWIFFEFSIIALISFLIIFFCKQMDIFH 181 E+H VMS LYYPEV++++DKHY+ELFWNKVYYFW+FFE ++IA ++ LII K +IF Sbjct: 123 ESHKVMSKLYYPEVKELKDKHYVELFWNKVYYFWVFFEHTVIAFVTILIISIAKLTNIFS 182 Query: 182 VEGSLLSLFFFVILSFSVSGIIFALTVKPRTESQVGKIPDDKIKEFFTKNNI 233 V GSL++L+ ++I + +IF +VKPRTESQV +IPD KIKEFF NNI Sbjct: 183 VTGSLINLWLWIISLVAFDFLIFIASVKPRTESQVRQIPDSKIKEFFNNNNI 234 >UniRef50_Q1QNM5 Putative uncharacterized protein n=1 Tax=Nitrobacter hamburgensis X14 RepID=Q1QNM5_NITHX Length = 246 Score = 207 bits (526), Expect = 3e-52, Method: Composition-based stats. Identities = 46/192 (23%), Positives = 87/192 (45%), Gaps = 24/192 (12%) Query: 8 PKNYNEMLPKLHKATFLNTLIYCILLVIYEYIPLITLPTKYVPPIKDHESFINWALSFGI 67 PKNY+EML K+ A F TL L ++ + +++P K+ + + A + Sbjct: 14 PKNYSEMLWKIALADFWLTLACTFLARQDPWVESLFSQIEHLPGFKEFATAVK-APEINV 72 Query: 68 LPCAFAIFAYLISGALDLHNNAAKLLRVRYLWDKHLIIKPLSRRAGVN------RKLNKD 121 A A+ + S H+ + ++R +D+ I+ PL+ +GV + L +D Sbjct: 73 GGFAIALAVLIFSRVTHFHDRISDFFKIRARFDRANILLPLAVMSGVQMTARQIQNLERD 132 Query: 122 EAHNVMSNLYYP-----EVRKIEDKHYIE-------LFWNKVYYFWIFFEFSIIALIS-- 167 H +M +Y + + DKH IE ++W + +F+I F+I++ I+ Sbjct: 133 R-HPLMRGTFYKYASSRSEKPLVDKHDIESALEAWHMYWVALEWFFILTGFAILSAIARS 191 Query: 168 --FLIIFFCKQM 177 L++F+ M Sbjct: 192 SWLLVVFWVASM 203 >UniRef50_Q89TW4 Blr1659 protein n=1 Tax=Bradyrhizobium japonicum RepID=Q89TW4_BRAJA Length = 342 Score = 153 bits (388), Expect = 4e-36, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 52/124 (41%), Gaps = 13/124 (10%) Query: 33 LVIYEYIPLITLPTKYVPPIKDHESFINWALSFGILPCAFAIFAYLISGALDLHNNAAKL 92 + +I + L +++P +K+ + I A + A A+ + S H+ + + Sbjct: 1 MRYDPWINGLFLRVEHLPGVKEFATAIK-APEVNVGGFALALLVLIFSRVTRFHDRISDI 59 Query: 93 LRVRYLWDKHLIIKPLSRRAGVNR------KLNKDEAHNVMSNLYYP-----EVRKIEDK 141 ++R +D+ I+ PL+ +G L +D H ++ +Y + DK Sbjct: 60 FKIRARFDRANILLPLAVMSGAQMSARQVANLKRDR-HPLVRATFYKYASSRSEHPLVDK 118 Query: 142 HYIE 145 H IE Sbjct: 119 HDIE 122 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.322 0.141 0.401 Lambda K H 0.267 0.0429 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 911,235,230 Number of Sequences: 3077464 Number of extensions: 33474482 Number of successful extensions: 172512 Number of sequences better than 1.0e-01: 11 Number of HSP's better than 0.1 without gapping: 8 Number of HSP's successfully gapped in prelim test: 14 Number of HSP's that attempted gapping in prelim test: 172490 Number of HSP's gapped (non-prelim): 22 length of query: 234 length of database: 1,040,396,356 effective HSP length: 125 effective length of query: 109 effective length of database: 655,713,356 effective search space: 71472755804 effective search space used: 71472755804 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.4 bits) S2: 91 (39.6 bits)