Email l.a.kelley@imperial.ac.uk Description P37649 Date Thu Jan 5 11:56:21 GMT 2012 Unique Job ID 5d49611a64f5ca83

Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	V	S	R	S	L	T	I	K	Q	M	A	M	V	A	A	V	V	L	V	F	V	F	I	F	C	T	V	L	L	F	H	L	V	Q	Q	N	R	Y	N	T	A	T	Q	L	E	S	I	A	R	S	V	R	E	P	L	S	S	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?																																																	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		I	L	K	G	D	I	P	E	A	E	A	I	L	A	S	I	K	P	A	G	V	V	S	R	A	D	V	V	L	P	N	Q	F	Q	A	L	R	K	S	F	I	P	E	R	P	V	P	V	M	V	T	R	L	F	E	L	P	V	Q	I
Secondary structure
SS confidence
Disorder				?	?													?	?	?	?	?	?	?										?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?						?	?	?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		S	L	G	V	Y	S	L	E	R	P	A	N	P	Q	P	I	A	Y	L	V	L	Q	A	D	S	F	R	M	Y	K	F	V	M	S	T	L	S	T	L	V	T	I	Y	L	L	L	S	L	I	L	T	V	A	I	S	W	C	I	N	R
Secondary structure
SS confidence
Disorder			?	?	?		?	?		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		L	I	L	H	P	L	R	N	I	A	R	E	L	N	A	I	P	A	K	E	L	V	G	H	Q	L	A	L	P	R	L	H	Q	D	D	E	I	G	M	L	V	R	S	Y	N	L	N	Q	Q	L	L	Q	R	H	Y	E	E	Q	N	E
Secondary structure
SS confidence
Disorder																?	?	?	?	?	?	?	?								?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		N	A	M	R	F	P	V	S	D	L	P	N	K	A	L	L	M	E	M	L	E	Q	V	V	A	R	K	Q	T	T	A	L	M	I	I	T	C	E	T	L	R	D	T	A	G	V	L	K	E	A	Q	R	E	I	L	L	L	T	L	V
Secondary structure
SS confidence
Disorder																											?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		E	K	L	K	S	V	L	S	P	R	M	I	L	A	Q	I	S	G	Y	D	F	A	V	I	A	N	G	V	Q	E	P	W	H	A	I	T	L	G	Q	Q	V	L	T	I	M	S	E	R	L	P	I	E	R	I	Q	L	R	P	H	C
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		S	I	G	V	A	M	F	Y	G	D	L	T	A	E	Q	L	Y	S	R	A	I	S	A	A	F	T	A	R	H	K	G	K	N	Q	I	Q	F	F	D	P	Q	Q	M	E	A	A	Q	K	R	L	T	E	E	S	D	I	L	N	A	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		E	N	H	Q	F	A	I	W	L	Q	P	Q	V	E	M	T	S	G	K	L	V	S	A	E	V	L	L	R	I	Q	Q	P	D	G	S	W	D	L	P	D	G	L	I	D	R	I	E	C	C	G	L	M	V	T	V	G	H	W	V	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
Sequence		E	E	S	C	R	L	L	A	A	W	Q	E	R	G	I	M	L	P	L	S	V	N	L	S	A	L	Q	L	M	H	P	N	M	V	A	D	M	L	E	L	L	T	R	Y	R	I	Q	P	G	T	L	I	L	E	V	T	E	S	R	R
Secondary structure
SS confidence
Disorder																													?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600
Sequence		I	D	D	P	H	A	A	V	A	I	L	R	P	L	R	N	A	G	V	R	V	A	L	D	D	F	G	M	G	Y	A	G	L	R	Q	L	Q	H	M	K	S	L	P	I	D	V	L	K	I	D	K	M	F	V	E	G	L	P	G	D
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660
Sequence		S	S	M	I	A	A	I	I	M	L	A	Q	S	L	N	L	Q	M	I	A	E	G	V	E	T	E	A	Q	R	D	W	L	A	K	A	G	V	G	I	A	Q	G	F	L	F	A	R	P	L	P	I	E	I	F	E	E	S	Y	L	E
Secondary structure
SS confidence
Disorder																																																													?
Disorder confidence
		.	.
Sequence		E	K
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand