BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (98 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q46865 Motility quorum-sensing regulator mqsR n=16 Tax=... 204 6e-52 UniRef50_A6BTZ7 Quorum-sensing regulator n=27 Tax=Proteobacteria... 133 1e-30 UniRef50_B2AGD9 Putative uncharacterized protein n=8 Tax=Burkhol... 99 4e-20 UniRef50_Q4KHU9 Putative uncharacterized protein n=3 Tax=Gammapr... 87 2e-16 UniRef50_Q2Y6X0 Putative uncharacterized protein n=1 Tax=Nitroso... 85 9e-16 UniRef50_B4SBL6 Putative uncharacterized protein n=4 Tax=Bacteri... 74 2e-12 UniRef50_Q1IJ03 Putative uncharacterized protein n=3 Tax=Bacteri... 72 7e-12 UniRef50_C7RJL9 Putative uncharacterized protein n=1 Tax=Candida... 64 2e-09 UniRef50_A5GDY4 Putative uncharacterized protein n=5 Tax=Proteob... 59 4e-08 UniRef50_Q2LYD0 Hypothetical cytosolic protein n=1 Tax=Syntrophu... 59 4e-08 UniRef50_A5GA92 Putative uncharacterized protein n=1 Tax=Geobact... 59 5e-08 UniRef50_C6N7W8 Putative uncharacterized protein n=1 Tax=Legione... 54 2e-06 UniRef50_C0GU76 Putative uncharacterized protein n=1 Tax=Desulfo... 46 3e-04 UniRef50_A9DJA5 Putative uncharacterized protein n=2 Tax=Shewane... 42 0.005 UniRef50_Q07J17 Putative uncharacterized protein n=1 Tax=Rhodops... 42 0.005 UniRef50_A5G9Y0 Putative uncharacterized protein n=1 Tax=Geobact... 39 0.037 >UniRef50_Q46865 Motility quorum-sensing regulator mqsR n=16 Tax=Proteobacteria RepID=MQSR_ECOLI Length = 98 Score = 204 bits (520), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 98/98 (100%), Positives = 98/98 (100%) Query: 1 MEKRTPHTRLSQVKKLVNAGQVRTTRSALLNADELGLDFDGMCNVIIGLSESDFYKSMTT 60 MEKRTPHTRLSQVKKLVNAGQVRTTRSALLNADELGLDFDGMCNVIIGLSESDFYKSMTT Sbjct: 1 MEKRTPHTRLSQVKKLVNAGQVRTTRSALLNADELGLDFDGMCNVIIGLSESDFYKSMTT 60 Query: 61 YSDHTIWQDVYRPRLVTGQVYLKITVIHDVLIVSFKEK 98 YSDHTIWQDVYRPRLVTGQVYLKITVIHDVLIVSFKEK Sbjct: 61 YSDHTIWQDVYRPRLVTGQVYLKITVIHDVLIVSFKEK 98 >UniRef50_A6BTZ7 Quorum-sensing regulator n=27 Tax=Proteobacteria RepID=A6BTZ7_YERPE Length = 98 Score = 133 bits (335), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 65/97 (67%), Positives = 76/97 (78%) Query: 1 MEKRTPHTRLSQVKKLVNAGQVRTTRSALLNADELGLDFDGMCNVIIGLSESDFYKSMTT 60 MEKRTPHTRL +VK+LV G ++TTR+A A+ELGL F MC+ + L +DFYKSMTT Sbjct: 1 MEKRTPHTRLLKVKELVLKGNIKTTRTARDGAEELGLSFRDMCDAVSELISADFYKSMTT 60 Query: 61 YSDHTIWQDVYRPRLVTGQVYLKITVIHDVLIVSFKE 97 + DHTIWQDVYRP L G+VYLKITVI DVL VSFKE Sbjct: 61 HQDHTIWQDVYRPMLSCGRVYLKITVIDDVLNVSFKE 97 >UniRef50_B2AGD9 Putative uncharacterized protein n=8 Tax=Burkholderiales RepID=B2AGD9_CUPTR Length = 98 Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 48/98 (48%), Positives = 68/98 (69%) Query: 1 MEKRTPHTRLSQVKKLVNAGQVRTTRSALLNADELGLDFDGMCNVIIGLSESDFYKSMTT 60 MEK T H +L VK L+ AG++ T +A +A +GL + G+ +++ L +DFYKSMTT Sbjct: 1 MEKGTAHYKLRHVKALLLAGKMDMTFAAYSHAAMMGLRWTGVRDILARLEPADFYKSMTT 60 Query: 61 YSDHTIWQDVYRPRLVTGQVYLKITVIHDVLIVSFKEK 98 Y DH IWQDVYRP G +Y+K+TV ++VL+VSFK + Sbjct: 61 YEDHRIWQDVYRPVTPHGALYVKLTVANEVLVVSFKTR 98 >UniRef50_Q4KHU9 Putative uncharacterized protein n=3 Tax=Gammaproteobacteria RepID=Q4KHU9_PSEF5 Length = 147 Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/100 (50%), Positives = 61/100 (61%), Gaps = 3/100 (3%) Query: 1 MEKRTPHTRLSQVK-KLVNAGQVRTTRSALLNADELGLDFDGMCNVIIGLSESDFYKSMT 59 MEK+TPH LS +K ++V G TRSALL ELGL M VI GL S FYKSMT Sbjct: 45 MEKKTPHYDLSLIKAQVVRQGAQAFTRSALLCGKELGLSLAAMQRVIAGLQGSMFYKSMT 104 Query: 60 TYSDHTIWQDVYRPRLVTGQVYLKITVIHDV--LIVSFKE 97 TY DH +WQDVY + +Y+KIT + ++SFKE Sbjct: 105 TYHDHRVWQDVYYTGIDNRTLYIKITQRPGIGPPVISFKE 144 >UniRef50_Q2Y6X0 Putative uncharacterized protein n=1 Tax=Nitrosospira multiformis ATCC 25196 RepID=Q2Y6X0_NITMU Length = 100 Score = 84.7 bits (208), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 47/100 (47%), Positives = 61/100 (61%), Gaps = 2/100 (2%) Query: 1 MEKRTPHTRLSQVKKLVNAGQVRTTRSALLNADELGL-DFDGMCNVIIGLSESDFYKSMT 59 M+K PH L +VK L+ AGQ R TR A D+LG + + ++ L +DFYKSMT Sbjct: 1 MDKSKPHYELDKVKSLIRAGQYRITRVASEGGDKLGFKNTQEIAEFVLTLKRTDFYKSMT 60 Query: 60 TYSDHTIWQDVYRPRLVTGQ-VYLKITVIHDVLIVSFKEK 98 + +H WQDVY T + VYLK V +DVLI+SFKEK Sbjct: 61 SNMNHKEWQDVYHGDGPTKKVVYLKFIVTNDVLILSFKEK 100 >UniRef50_B4SBL6 Putative uncharacterized protein n=4 Tax=Bacteria RepID=B4SBL6_PELPB Length = 102 Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/102 (46%), Positives = 59/102 (57%), Gaps = 4/102 (3%) Query: 1 MEKRTPHTRLSQVKKLVNAGQVRT-TRSALLNADELGLDFDGMCNVIIGLSESDFYKSMT 59 MEKRTPH L +V+ +V R T +AL LGL M V++ LS SDFYKSMT Sbjct: 1 MEKRTPHYHLDEVQAIVADENSRPFTVAALRGGLSLGLTEVEMRLVVLSLSRSDFYKSMT 60 Query: 60 TYSDHTIWQDVYRPRLVTG-QVYLKITVIHD--VLIVSFKEK 98 T++DH +WQDVY G VY+KIT D ++ FK K Sbjct: 61 THADHQLWQDVYHGETQDGVAVYIKITGYVDGRPPVIQFKAK 102 >UniRef50_Q1IJ03 Putative uncharacterized protein n=3 Tax=Bacteria RepID=Q1IJ03_ACIBL Length = 102 Score = 71.6 bits (174), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 40/102 (39%), Positives = 55/102 (53%), Gaps = 4/102 (3%) Query: 1 MEKRTPHTRLSQVKKLVNAGQVRT---TRSALLNADELGLDFDGMCNVIIGLSESDFYKS 57 M + H+ L + N + R T++AL LGL M VI L+ +FYKS Sbjct: 1 MYRGQAHSPLPPISDPENGREARGNAFTKTALDGGRALGLTSSEMLAVIAALTRREFYKS 60 Query: 58 MTTYSDHTIWQDVYRPRLVTGQV-YLKITVIHDVLIVSFKEK 98 MTTY DH +WQDVY G+V Y+KIT+ + ++ FKEK Sbjct: 61 MTTYFDHKVWQDVYHAMTPAGKVAYIKITLRDNAPVIQFKEK 102 >UniRef50_C7RJL9 Putative uncharacterized protein n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RJL9_9PROT Length = 100 Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 36/99 (36%), Positives = 56/99 (56%), Gaps = 2/99 (2%) Query: 1 MEKRTPHTRLSQVKKLVNAGQVRT-TRSALLNADELGLDFDGMCNVIIGLSESDFYKSMT 59 MEKR H L QVK +V + + T +ALL +GL ++++GL +KSMT Sbjct: 1 MEKRRAHYDLGQVKAVVMYRGIDSFTSTALLGLFSMGLSEADGVSIVLGLRRDMLFKSMT 60 Query: 60 TYSDHTIWQDVYRPRLVTGQ-VYLKITVIHDVLIVSFKE 97 T++D +WQDVY G+ Y+K+T+ +++ FKE Sbjct: 61 THADSRVWQDVYHAPCPNGKTAYVKVTLQDGAVVIQFKE 99 >UniRef50_A5GDY4 Putative uncharacterized protein n=5 Tax=Proteobacteria RepID=A5GDY4_GEOUR Length = 105 Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 37/100 (37%), Positives = 52/100 (52%), Gaps = 3/100 (3%) Query: 2 EKRTPHTRLSQVKK-LVNAGQVRTTRSALLNADELGLDFDGMCNVIIGLSESDFYKSMTT 60 EKR P L K + ++ T +AL +A LG + + I + FYKSMT Sbjct: 3 EKRKPTYDLDAFKATFASIEKLAVTGTALRSAAALGYGRAEIVDTIQTMQRGHFYKSMTA 62 Query: 61 YSDHTIWQDVYRPRLVTGQVYLKIT--VIHDVLIVSFKEK 98 Y+D +WQDVY G +Y+K T I + L++SFKEK Sbjct: 63 YADSRLWQDVYHVPSQAGVLYVKFTADAITEFLLLSFKEK 102 >UniRef50_Q2LYD0 Hypothetical cytosolic protein n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LYD0_SYNAS Length = 113 Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 36/87 (41%), Positives = 48/87 (55%), Gaps = 2/87 (2%) Query: 2 EKRTPHTRLSQVKKLVNAGQVRT-TRSALLNADELG-LDFDGMCNVIIGLSESDFYKSMT 59 EKR PH LS K+L + + R T+ A A G + + + NVI L FYKSMT Sbjct: 7 EKRRPHYELSLFKELFSNAKTRQITQIAHKGAASEGYMTVEDIENVIEQLGSKHFYKSMT 66 Query: 60 TYSDHTIWQDVYRPRLVTGQVYLKITV 86 TY H IWQDVY + ++Y+KI + Sbjct: 67 TYHSHEIWQDVYHYQDGDKKLYIKIQL 93 >UniRef50_A5GA92 Putative uncharacterized protein n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5GA92_GEOUR Length = 99 Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 1/99 (1%) Query: 1 MEKRTPHTRLSQVKKLVNAGQ-VRTTRSALLNADELGLDFDGMCNVIIGLSESDFYKSMT 59 MEKR PH L ++ ++ + + T +A +G+ VI LS +FYK+MT Sbjct: 1 MEKRRPHYDLKSIQAQMDCIEAMNLTMTARHGIKAIGMALGDALVVIKRLSMGNFYKAMT 60 Query: 60 TYSDHTIWQDVYRPRLVTGQVYLKITVIHDVLIVSFKEK 98 ++D +WQDVY +Y+K + IVSFKE+ Sbjct: 61 VHADSRVWQDVYHAEWKGRALYIKFQRHEEFFIVSFKER 99 >UniRef50_C6N7W8 Putative uncharacterized protein n=1 Tax=Legionella drancourtii LLAP12 RepID=C6N7W8_9GAMM Length = 106 Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/100 (37%), Positives = 50/100 (50%), Gaps = 3/100 (3%) Query: 2 EKRTPHTRLSQVKKLVN-AGQVRTTRSALLNADELGLDFDGMCNVIIGLSESDFYKSMTT 60 E R P L+ +KK N ++R T SA LG + I L+ +DFYKSM Sbjct: 7 ESRRPSYNLNDIKKAFNNEHKLRMTVSAKQGQLALGFSDHDVVEAIQSLTSTDFYKSMAP 66 Query: 61 YSD-HTIWQDVYRPRLVTGQVYLKITV-IHDVLIVSFKEK 98 + T WQDVY+ +Y+K V + LI+SFKEK Sbjct: 67 VTPGFTAWQDVYKANFKGVHLYIKFQVNTYGELILSFKEK 106 >UniRef50_C0GU76 Putative uncharacterized protein n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GU76_9DELT Length = 107 Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 4/101 (3%) Query: 1 MEKRTPHTRLSQVKKLVNAGQVRTTRSALLNADELGLDFDGMCNVIIGLSESDFYKSMTT 60 M K PH L + K L+++ + +SA A +L + + +V++ + SDF KS Sbjct: 1 MAKWKPHYDLKKSKSLIDSDKYIIVKSAKTTAFKLNFNEQRIKDVLLNIKPSDFSKSEED 60 Query: 61 YSDHTIWQDVYRPRLVTGQVYLKITVIHD----VLIVSFKE 97 + WQD Y+ ++Y+K + + +L++SFKE Sbjct: 61 WQIKGHWQDAYKTCYDGHRLYVKWKITENKEEHLLVLSFKE 101 >UniRef50_A9DJA5 Putative uncharacterized protein n=2 Tax=Shewanella RepID=A9DJA5_9GAMM Length = 101 Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 1/89 (1%) Query: 10 LSQVKK-LVNAGQVRTTRSALLNADELGLDFDGMCNVIIGLSESDFYKSMTTYSDHTIWQ 68 LS V+K L +R T++A A LG D + + I ++ S FYK+M + + Sbjct: 12 LSDVQKALRTVRSLRMTKTARRGATSLGFDDQDIVDAIQSITSSHFYKTMPSDTSGYPHH 71 Query: 69 DVYRPRLVTGQVYLKITVIHDVLIVSFKE 97 DVY+ +YLK + ++VSFKE Sbjct: 72 DVYKFVFKNVYIYLKFQDLAGHMVVSFKE 100 >UniRef50_Q07J17 Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris BisA53 RepID=Q07J17_RHOP5 Length = 103 Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 2/76 (2%) Query: 25 TRSALLNADELGLDFDGMCNVIIGLSESDFYKSMTTYSDHTIWQDVYRPRLVTGQVYLKI 84 T SAL +A LG + + VI + F+K+M + +WQDVYR ++Y+K Sbjct: 28 TGSALRDAASLGYGSEEIIAVIQSIEPDHFHKTMPSEKRPGLWQDVYRVPDREMELYVKF 87 Query: 85 T--VIHDVLIVSFKEK 98 T + + ++SFKE+ Sbjct: 88 TSDTVTEFKLLSFKER 103 >UniRef50_A5G9Y0 Putative uncharacterized protein n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5G9Y0_GEOUR Length = 109 Score = 39.3 bits (90), Expect = 0.037, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 4/98 (4%) Query: 5 TPHTRLSQVKKLVNAGQVRT-TRSALLNADELG-LDFDGMCNVIIGLSESDFYKSMTTYS 62 TP+ L ++K+L+ R TR A LG D D M + + ++ +F K M + Sbjct: 12 TPYYSLEKIKRLLRNSDTRIITRRDRQEAAALGYADDDEMVDRVSQVTLDEFKKKMPSED 71 Query: 63 DHTIWQDVYRPRLVTG-QVYLKITVIHDV-LIVSFKEK 98 WQDVY G ++Y+K+ + + +I+SFK K Sbjct: 72 MPGYWQDVYNSIEPDGTKIYIKLQIREESGVIISFKRK 109 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q46865 Motility quorum-sensing regulator mqsR n=16 Tax=... 147 1e-34 UniRef50_A6BTZ7 Quorum-sensing regulator n=27 Tax=Proteobacteria... 143 1e-33 UniRef50_Q4KHU9 Putative uncharacterized protein n=3 Tax=Gammapr... 136 2e-31 UniRef50_B2AGD9 Putative uncharacterized protein n=8 Tax=Burkhol... 135 4e-31 UniRef50_A5GA92 Putative uncharacterized protein n=1 Tax=Geobact... 131 7e-30 UniRef50_Q1IJ03 Putative uncharacterized protein n=3 Tax=Bacteri... 131 8e-30 UniRef50_C7RJL9 Putative uncharacterized protein n=1 Tax=Candida... 130 1e-29 UniRef50_B4SBL6 Putative uncharacterized protein n=4 Tax=Bacteri... 129 2e-29 UniRef50_Q2Y6X0 Putative uncharacterized protein n=1 Tax=Nitroso... 127 8e-29 UniRef50_A5GDY4 Putative uncharacterized protein n=5 Tax=Proteob... 121 6e-27 UniRef50_C0GU76 Putative uncharacterized protein n=1 Tax=Desulfo... 118 4e-26 UniRef50_C6N7W8 Putative uncharacterized protein n=1 Tax=Legione... 115 6e-25 UniRef50_Q2LYD0 Hypothetical cytosolic protein n=1 Tax=Syntrophu... 104 8e-22 Sequences not found previously or not previously below threshold: UniRef50_Q07J17 Putative uncharacterized protein n=1 Tax=Rhodops... 86 3e-16 UniRef50_A9DJA5 Putative uncharacterized protein n=2 Tax=Shewane... 77 1e-13 UniRef50_A5G9Y0 Putative uncharacterized protein n=1 Tax=Geobact... 65 5e-10 UniRef50_A7BW94 Putative uncharacterized protein n=1 Tax=Beggiat... 39 0.045 >UniRef50_Q46865 Motility quorum-sensing regulator mqsR n=16 Tax=Proteobacteria RepID=MQSR_ECOLI Length = 98 Score = 147 bits (370), Expect = 1e-34, Method: Composition-based stats. Identities = 98/98 (100%), Positives = 98/98 (100%) Query: 1 MEKRTPHTRLSQVKKLVNAGQVRTTRSALLNADELGLDFDGMCNVIIGLSESDFYKSMTT 60 MEKRTPHTRLSQVKKLVNAGQVRTTRSALLNADELGLDFDGMCNVIIGLSESDFYKSMTT Sbjct: 1 MEKRTPHTRLSQVKKLVNAGQVRTTRSALLNADELGLDFDGMCNVIIGLSESDFYKSMTT 60 Query: 61 YSDHTIWQDVYRPRLVTGQVYLKITVIHDVLIVSFKEK 98 YSDHTIWQDVYRPRLVTGQVYLKITVIHDVLIVSFKEK Sbjct: 61 YSDHTIWQDVYRPRLVTGQVYLKITVIHDVLIVSFKEK 98 >UniRef50_A6BTZ7 Quorum-sensing regulator n=27 Tax=Proteobacteria RepID=A6BTZ7_YERPE Length = 98 Score = 143 bits (361), Expect = 1e-33, Method: Composition-based stats. Identities = 65/97 (67%), Positives = 76/97 (78%) Query: 1 MEKRTPHTRLSQVKKLVNAGQVRTTRSALLNADELGLDFDGMCNVIIGLSESDFYKSMTT 60 MEKRTPHTRL +VK+LV G ++TTR+A A+ELGL F MC+ + L +DFYKSMTT Sbjct: 1 MEKRTPHTRLLKVKELVLKGNIKTTRTARDGAEELGLSFRDMCDAVSELISADFYKSMTT 60 Query: 61 YSDHTIWQDVYRPRLVTGQVYLKITVIHDVLIVSFKE 97 + DHTIWQDVYRP L G+VYLKITVI DVL VSFKE Sbjct: 61 HQDHTIWQDVYRPMLSCGRVYLKITVIDDVLNVSFKE 97 >UniRef50_Q4KHU9 Putative uncharacterized protein n=3 Tax=Gammaproteobacteria RepID=Q4KHU9_PSEF5 Length = 147 Score = 136 bits (343), Expect = 2e-31, Method: Composition-based stats. Identities = 50/100 (50%), Positives = 60/100 (60%), Gaps = 3/100 (3%) Query: 1 MEKRTPHTRLSQVKK-LVNAGQVRTTRSALLNADELGLDFDGMCNVIIGLSESDFYKSMT 59 MEK+TPH LS +K +V G TRSALL ELGL M VI GL S FYKSMT Sbjct: 45 MEKKTPHYDLSLIKAQVVRQGAQAFTRSALLCGKELGLSLAAMQRVIAGLQGSMFYKSMT 104 Query: 60 TYSDHTIWQDVYRPRLVTGQVYLKITVIHDV--LIVSFKE 97 TY DH +WQDVY + +Y+KIT + ++SFKE Sbjct: 105 TYHDHRVWQDVYYTGIDNRTLYIKITQRPGIGPPVISFKE 144 >UniRef50_B2AGD9 Putative uncharacterized protein n=8 Tax=Burkholderiales RepID=B2AGD9_CUPTR Length = 98 Score = 135 bits (340), Expect = 4e-31, Method: Composition-based stats. Identities = 48/98 (48%), Positives = 68/98 (69%) Query: 1 MEKRTPHTRLSQVKKLVNAGQVRTTRSALLNADELGLDFDGMCNVIIGLSESDFYKSMTT 60 MEK T H +L VK L+ AG++ T +A +A +GL + G+ +++ L +DFYKSMTT Sbjct: 1 MEKGTAHYKLRHVKALLLAGKMDMTFAAYSHAAMMGLRWTGVRDILARLEPADFYKSMTT 60 Query: 61 YSDHTIWQDVYRPRLVTGQVYLKITVIHDVLIVSFKEK 98 Y DH IWQDVYRP G +Y+K+TV ++VL+VSFK + Sbjct: 61 YEDHRIWQDVYRPVTPHGALYVKLTVANEVLVVSFKTR 98 >UniRef50_A5GA92 Putative uncharacterized protein n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5GA92_GEOUR Length = 99 Score = 131 bits (329), Expect = 7e-30, Method: Composition-based stats. Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 1/99 (1%) Query: 1 MEKRTPHTRLSQVKKLVNAGQ-VRTTRSALLNADELGLDFDGMCNVIIGLSESDFYKSMT 59 MEKR PH L ++ ++ + + T +A +G+ VI LS +FYK+MT Sbjct: 1 MEKRRPHYDLKSIQAQMDCIEAMNLTMTARHGIKAIGMALGDALVVIKRLSMGNFYKAMT 60 Query: 60 TYSDHTIWQDVYRPRLVTGQVYLKITVIHDVLIVSFKEK 98 ++D +WQDVY +Y+K + IVSFKE+ Sbjct: 61 VHADSRVWQDVYHAEWKGRALYIKFQRHEEFFIVSFKER 99 >UniRef50_Q1IJ03 Putative uncharacterized protein n=3 Tax=Bacteria RepID=Q1IJ03_ACIBL Length = 102 Score = 131 bits (329), Expect = 8e-30, Method: Composition-based stats. Identities = 40/102 (39%), Positives = 55/102 (53%), Gaps = 4/102 (3%) Query: 1 MEKRTPHTRLSQVKKLVNAGQVR---TTRSALLNADELGLDFDGMCNVIIGLSESDFYKS 57 M + H+ L + N + R T++AL LGL M VI L+ +FYKS Sbjct: 1 MYRGQAHSPLPPISDPENGREARGNAFTKTALDGGRALGLTSSEMLAVIAALTRREFYKS 60 Query: 58 MTTYSDHTIWQDVYRPRLVTGQV-YLKITVIHDVLIVSFKEK 98 MTTY DH +WQDVY G+V Y+KIT+ + ++ FKEK Sbjct: 61 MTTYFDHKVWQDVYHAMTPAGKVAYIKITLRDNAPVIQFKEK 102 >UniRef50_C7RJL9 Putative uncharacterized protein n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RJL9_9PROT Length = 100 Score = 130 bits (327), Expect = 1e-29, Method: Composition-based stats. Identities = 36/99 (36%), Positives = 55/99 (55%), Gaps = 2/99 (2%) Query: 1 MEKRTPHTRLSQVKKLVNAGQVR-TTRSALLNADELGLDFDGMCNVIIGLSESDFYKSMT 59 MEKR H L QVK +V + T +ALL +GL ++++GL +KSMT Sbjct: 1 MEKRRAHYDLGQVKAVVMYRGIDSFTSTALLGLFSMGLSEADGVSIVLGLRRDMLFKSMT 60 Query: 60 TYSDHTIWQDVYRPRLVTGQ-VYLKITVIHDVLIVSFKE 97 T++D +WQDVY G+ Y+K+T+ +++ FKE Sbjct: 61 THADSRVWQDVYHAPCPNGKTAYVKVTLQDGAVVIQFKE 99 >UniRef50_B4SBL6 Putative uncharacterized protein n=4 Tax=Bacteria RepID=B4SBL6_PELPB Length = 102 Score = 129 bits (325), Expect = 2e-29, Method: Composition-based stats. Identities = 47/102 (46%), Positives = 59/102 (57%), Gaps = 4/102 (3%) Query: 1 MEKRTPHTRLSQVKKLVNAGQVR-TTRSALLNADELGLDFDGMCNVIIGLSESDFYKSMT 59 MEKRTPH L +V+ +V R T +AL LGL M V++ LS SDFYKSMT Sbjct: 1 MEKRTPHYHLDEVQAIVADENSRPFTVAALRGGLSLGLTEVEMRLVVLSLSRSDFYKSMT 60 Query: 60 TYSDHTIWQDVYRPRLVTG-QVYLKITVIHD--VLIVSFKEK 98 T++DH +WQDVY G VY+KIT D ++ FK K Sbjct: 61 THADHQLWQDVYHGETQDGVAVYIKITGYVDGRPPVIQFKAK 102 >UniRef50_Q2Y6X0 Putative uncharacterized protein n=1 Tax=Nitrosospira multiformis ATCC 25196 RepID=Q2Y6X0_NITMU Length = 100 Score = 127 bits (320), Expect = 8e-29, Method: Composition-based stats. Identities = 47/100 (47%), Positives = 61/100 (61%), Gaps = 2/100 (2%) Query: 1 MEKRTPHTRLSQVKKLVNAGQVRTTRSALLNADELGL-DFDGMCNVIIGLSESDFYKSMT 59 M+K PH L +VK L+ AGQ R TR A D+LG + + ++ L +DFYKSMT Sbjct: 1 MDKSKPHYELDKVKSLIRAGQYRITRVASEGGDKLGFKNTQEIAEFVLTLKRTDFYKSMT 60 Query: 60 TYSDHTIWQDVYRPRLVTGQ-VYLKITVIHDVLIVSFKEK 98 + +H WQDVY T + VYLK V +DVLI+SFKEK Sbjct: 61 SNMNHKEWQDVYHGDGPTKKVVYLKFIVTNDVLILSFKEK 100 >UniRef50_A5GDY4 Putative uncharacterized protein n=5 Tax=Proteobacteria RepID=A5GDY4_GEOUR Length = 105 Score = 121 bits (304), Expect = 6e-27, Method: Composition-based stats. Identities = 37/100 (37%), Positives = 52/100 (52%), Gaps = 3/100 (3%) Query: 2 EKRTPHTRLSQVKKLVNA-GQVRTTRSALLNADELGLDFDGMCNVIIGLSESDFYKSMTT 60 EKR P L K + ++ T +AL +A LG + + I + FYKSMT Sbjct: 3 EKRKPTYDLDAFKATFASIEKLAVTGTALRSAAALGYGRAEIVDTIQTMQRGHFYKSMTA 62 Query: 61 YSDHTIWQDVYRPRLVTGQVYLKIT--VIHDVLIVSFKEK 98 Y+D +WQDVY G +Y+K T I + L++SFKEK Sbjct: 63 YADSRLWQDVYHVPSQAGVLYVKFTADAITEFLLLSFKEK 102 >UniRef50_C0GU76 Putative uncharacterized protein n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GU76_9DELT Length = 107 Score = 118 bits (297), Expect = 4e-26, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 4/101 (3%) Query: 1 MEKRTPHTRLSQVKKLVNAGQVRTTRSALLNADELGLDFDGMCNVIIGLSESDFYKSMTT 60 M K PH L + K L+++ + +SA A +L + + +V++ + SDF KS Sbjct: 1 MAKWKPHYDLKKSKSLIDSDKYIIVKSAKTTAFKLNFNEQRIKDVLLNIKPSDFSKSEED 60 Query: 61 YSDHTIWQDVYRPRLVTGQVYLKITVIHD----VLIVSFKE 97 + WQD Y+ ++Y+K + + +L++SFKE Sbjct: 61 WQIKGHWQDAYKTCYDGHRLYVKWKITENKEEHLLVLSFKE 101 >UniRef50_C6N7W8 Putative uncharacterized protein n=1 Tax=Legionella drancourtii LLAP12 RepID=C6N7W8_9GAMM Length = 106 Score = 115 bits (287), Expect = 6e-25, Method: Composition-based stats. Identities = 37/100 (37%), Positives = 50/100 (50%), Gaps = 3/100 (3%) Query: 2 EKRTPHTRLSQVKKLVNA-GQVRTTRSALLNADELGLDFDGMCNVIIGLSESDFYKSMTT 60 E R P L+ +KK N ++R T SA LG + I L+ +DFYKSM Sbjct: 7 ESRRPSYNLNDIKKAFNNEHKLRMTVSAKQGQLALGFSDHDVVEAIQSLTSTDFYKSMAP 66 Query: 61 YSD-HTIWQDVYRPRLVTGQVYLKITV-IHDVLIVSFKEK 98 + T WQDVY+ +Y+K V + LI+SFKEK Sbjct: 67 VTPGFTAWQDVYKANFKGVHLYIKFQVNTYGELILSFKEK 106 >UniRef50_Q2LYD0 Hypothetical cytosolic protein n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LYD0_SYNAS Length = 113 Score = 104 bits (260), Expect = 8e-22, Method: Composition-based stats. Identities = 37/100 (37%), Positives = 52/100 (52%), Gaps = 5/100 (5%) Query: 2 EKRTPHTRLSQVKKLVNAGQVR-TTRSALLNADELG-LDFDGMCNVIIGLSESDFYKSMT 59 EKR PH LS K+L + + R T+ A A G + + + NVI L FYKSMT Sbjct: 7 EKRRPHYELSLFKELFSNAKTRQITQIAHKGAASEGYMTVEDIENVIEQLGSKHFYKSMT 66 Query: 60 TYSDHTIWQDVYRPRLVTGQVYLKITV---IHDVLIVSFK 96 TY H IWQDVY + ++Y+KI + +++ K Sbjct: 67 TYHSHEIWQDVYHYQDGDKKLYIKIQLSVDRDKAVLIQMK 106 >UniRef50_Q07J17 Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris BisA53 RepID=Q07J17_RHOP5 Length = 103 Score = 86.2 bits (212), Expect = 3e-16, Method: Composition-based stats. Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 5/103 (4%) Query: 1 MEKR--TPHTRLSQVKKLVNAGQ-VRTTRSALLNADELGLDFDGMCNVIIGLSESDFYKS 57 M K P L ++K + + + T SAL +A LG + + VI + F+K+ Sbjct: 1 MAKSGSRPTHDLERIKSAFSTRKSLNITGSALRDAASLGYGSEEIIAVIQSIEPDHFHKT 60 Query: 58 MTTYSDHTIWQDVYRPRLVTGQVYLKIT--VIHDVLIVSFKEK 98 M + +WQDVYR ++Y+K T + + ++SFKE+ Sbjct: 61 MPSEKRPGLWQDVYRVPDREMELYVKFTSDTVTEFKLLSFKER 103 >UniRef50_A9DJA5 Putative uncharacterized protein n=2 Tax=Shewanella RepID=A9DJA5_9GAMM Length = 101 Score = 77.4 bits (189), Expect = 1e-13, Method: Composition-based stats. Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 1/96 (1%) Query: 3 KRTPHTRLSQV-KKLVNAGQVRTTRSALLNADELGLDFDGMCNVIIGLSESDFYKSMTTY 61 K LS V K L +R T++A A LG D + + I ++ S FYK+M + Sbjct: 5 KSKSTYVLSDVQKALRTVRSLRMTKTARRGATSLGFDDQDIVDAIQSITSSHFYKTMPSD 64 Query: 62 SDHTIWQDVYRPRLVTGQVYLKITVIHDVLIVSFKE 97 + DVY+ +YLK + ++VSFKE Sbjct: 65 TSGYPHHDVYKFVFKNVYIYLKFQDLAGHMVVSFKE 100 >UniRef50_A5G9Y0 Putative uncharacterized protein n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5G9Y0_GEOUR Length = 109 Score = 65.4 bits (158), Expect = 5e-10, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 4/98 (4%) Query: 5 TPHTRLSQVKKLVNAGQVRT-TRSALLNADELGLDFDG-MCNVIIGLSESDFYKSMTTYS 62 TP+ L ++K+L+ R TR A LG D M + + ++ +F K M + Sbjct: 12 TPYYSLEKIKRLLRNSDTRIITRRDRQEAAALGYADDDEMVDRVSQVTLDEFKKKMPSED 71 Query: 63 DHTIWQDVYRPRLVTG-QVYLKITVIHDV-LIVSFKEK 98 WQDVY G ++Y+K+ + + +I+SFK K Sbjct: 72 MPGYWQDVYNSIEPDGTKIYIKLQIREESGVIISFKRK 109 >UniRef50_A7BW94 Putative uncharacterized protein n=1 Tax=Beggiatoa sp. PS RepID=A7BW94_9GAMM Length = 93 Score = 39.2 bits (90), Expect = 0.045, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%) Query: 1 MEKRTPHTRLSQVKKLVNA-GQVRTTRSALLNADELGLD 38 MEKR+ L +K+ ++R TR+A LG Sbjct: 37 MEKRSRTYDLDGIKEAFKTVEELRMTRTARRTIVGLGFR 75 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q46865 Motility quorum-sensing regulator mqsR n=16 Tax=... 144 7e-34 UniRef50_A6BTZ7 Quorum-sensing regulator n=27 Tax=Proteobacteria... 141 6e-33 UniRef50_Q4KHU9 Putative uncharacterized protein n=3 Tax=Gammapr... 135 4e-31 UniRef50_B2AGD9 Putative uncharacterized protein n=8 Tax=Burkhol... 134 8e-31 UniRef50_C7RJL9 Putative uncharacterized protein n=1 Tax=Candida... 131 7e-30 UniRef50_A5GA92 Putative uncharacterized protein n=1 Tax=Geobact... 131 8e-30 UniRef50_Q1IJ03 Putative uncharacterized protein n=3 Tax=Bacteri... 130 2e-29 UniRef50_B4SBL6 Putative uncharacterized protein n=4 Tax=Bacteri... 129 3e-29 UniRef50_A5GDY4 Putative uncharacterized protein n=5 Tax=Proteob... 127 1e-28 UniRef50_Q2Y6X0 Putative uncharacterized protein n=1 Tax=Nitroso... 125 4e-28 UniRef50_C6N7W8 Putative uncharacterized protein n=1 Tax=Legione... 118 7e-26 UniRef50_Q07J17 Putative uncharacterized protein n=1 Tax=Rhodops... 117 1e-25 UniRef50_C0GU76 Putative uncharacterized protein n=1 Tax=Desulfo... 116 2e-25 UniRef50_Q2LYD0 Hypothetical cytosolic protein n=1 Tax=Syntrophu... 112 4e-24 UniRef50_A9DJA5 Putative uncharacterized protein n=2 Tax=Shewane... 112 5e-24 UniRef50_A5G9Y0 Putative uncharacterized protein n=1 Tax=Geobact... 100 1e-20 Sequences not found previously or not previously below threshold: UniRef50_Q0AU88 Putative uncharacterized protein n=1 Tax=Syntrop... 45 0.001 UniRef50_A7BW94 Putative uncharacterized protein n=1 Tax=Beggiat... 43 0.004 UniRef50_A7BUF6 Putative uncharacterized protein n=1 Tax=Beggiat... 40 0.017 >UniRef50_Q46865 Motility quorum-sensing regulator mqsR n=16 Tax=Proteobacteria RepID=MQSR_ECOLI Length = 98 Score = 144 bits (364), Expect = 7e-34, Method: Composition-based stats. Identities = 98/98 (100%), Positives = 98/98 (100%) Query: 1 MEKRTPHTRLSQVKKLVNAGQVRTTRSALLNADELGLDFDGMCNVIIGLSESDFYKSMTT 60 MEKRTPHTRLSQVKKLVNAGQVRTTRSALLNADELGLDFDGMCNVIIGLSESDFYKSMTT Sbjct: 1 MEKRTPHTRLSQVKKLVNAGQVRTTRSALLNADELGLDFDGMCNVIIGLSESDFYKSMTT 60 Query: 61 YSDHTIWQDVYRPRLVTGQVYLKITVIHDVLIVSFKEK 98 YSDHTIWQDVYRPRLVTGQVYLKITVIHDVLIVSFKEK Sbjct: 61 YSDHTIWQDVYRPRLVTGQVYLKITVIHDVLIVSFKEK 98 >UniRef50_A6BTZ7 Quorum-sensing regulator n=27 Tax=Proteobacteria RepID=A6BTZ7_YERPE Length = 98 Score = 141 bits (356), Expect = 6e-33, Method: Composition-based stats. Identities = 65/97 (67%), Positives = 76/97 (78%) Query: 1 MEKRTPHTRLSQVKKLVNAGQVRTTRSALLNADELGLDFDGMCNVIIGLSESDFYKSMTT 60 MEKRTPHTRL +VK+LV G ++TTR+A A+ELGL F MC+ + L +DFYKSMTT Sbjct: 1 MEKRTPHTRLLKVKELVLKGNIKTTRTARDGAEELGLSFRDMCDAVSELISADFYKSMTT 60 Query: 61 YSDHTIWQDVYRPRLVTGQVYLKITVIHDVLIVSFKE 97 + DHTIWQDVYRP L G+VYLKITVI DVL VSFKE Sbjct: 61 HQDHTIWQDVYRPMLSCGRVYLKITVIDDVLNVSFKE 97 >UniRef50_Q4KHU9 Putative uncharacterized protein n=3 Tax=Gammaproteobacteria RepID=Q4KHU9_PSEF5 Length = 147 Score = 135 bits (340), Expect = 4e-31, Method: Composition-based stats. Identities = 50/100 (50%), Positives = 60/100 (60%), Gaps = 3/100 (3%) Query: 1 MEKRTPHTRLSQVKK-LVNAGQVRTTRSALLNADELGLDFDGMCNVIIGLSESDFYKSMT 59 MEK+TPH LS +K +V G TRSALL ELGL M VI GL S FYKSMT Sbjct: 45 MEKKTPHYDLSLIKAQVVRQGAQAFTRSALLCGKELGLSLAAMQRVIAGLQGSMFYKSMT 104 Query: 60 TYSDHTIWQDVYRPRLVTGQVYLKITVIHDV--LIVSFKE 97 TY DH +WQDVY + +Y+KIT + ++SFKE Sbjct: 105 TYHDHRVWQDVYYTGIDNRTLYIKITQRPGIGPPVISFKE 144 >UniRef50_B2AGD9 Putative uncharacterized protein n=8 Tax=Burkholderiales RepID=B2AGD9_CUPTR Length = 98 Score = 134 bits (337), Expect = 8e-31, Method: Composition-based stats. Identities = 48/98 (48%), Positives = 68/98 (69%) Query: 1 MEKRTPHTRLSQVKKLVNAGQVRTTRSALLNADELGLDFDGMCNVIIGLSESDFYKSMTT 60 MEK T H +L VK L+ AG++ T +A +A +GL + G+ +++ L +DFYKSMTT Sbjct: 1 MEKGTAHYKLRHVKALLLAGKMDMTFAAYSHAAMMGLRWTGVRDILARLEPADFYKSMTT 60 Query: 61 YSDHTIWQDVYRPRLVTGQVYLKITVIHDVLIVSFKEK 98 Y DH IWQDVYRP G +Y+K+TV ++VL+VSFK + Sbjct: 61 YEDHRIWQDVYRPVTPHGALYVKLTVANEVLVVSFKTR 98 >UniRef50_C7RJL9 Putative uncharacterized protein n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RJL9_9PROT Length = 100 Score = 131 bits (329), Expect = 7e-30, Method: Composition-based stats. Identities = 36/99 (36%), Positives = 55/99 (55%), Gaps = 2/99 (2%) Query: 1 MEKRTPHTRLSQVKKLVNAGQVR-TTRSALLNADELGLDFDGMCNVIIGLSESDFYKSMT 59 MEKR H L QVK +V + T +ALL +GL ++++GL +KSMT Sbjct: 1 MEKRRAHYDLGQVKAVVMYRGIDSFTSTALLGLFSMGLSEADGVSIVLGLRRDMLFKSMT 60 Query: 60 TYSDHTIWQDVYRPRLVTGQ-VYLKITVIHDVLIVSFKE 97 T++D +WQDVY G+ Y+K+T+ +++ FKE Sbjct: 61 THADSRVWQDVYHAPCPNGKTAYVKVTLQDGAVVIQFKE 99 >UniRef50_A5GA92 Putative uncharacterized protein n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5GA92_GEOUR Length = 99 Score = 131 bits (329), Expect = 8e-30, Method: Composition-based stats. Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 1/99 (1%) Query: 1 MEKRTPHTRLSQVKKLVNAGQ-VRTTRSALLNADELGLDFDGMCNVIIGLSESDFYKSMT 59 MEKR PH L ++ ++ + + T +A +G+ VI LS +FYK+MT Sbjct: 1 MEKRRPHYDLKSIQAQMDCIEAMNLTMTARHGIKAIGMALGDALVVIKRLSMGNFYKAMT 60 Query: 60 TYSDHTIWQDVYRPRLVTGQVYLKITVIHDVLIVSFKEK 98 ++D +WQDVY +Y+K + IVSFKE+ Sbjct: 61 VHADSRVWQDVYHAEWKGRALYIKFQRHEEFFIVSFKER 99 >UniRef50_Q1IJ03 Putative uncharacterized protein n=3 Tax=Bacteria RepID=Q1IJ03_ACIBL Length = 102 Score = 130 bits (326), Expect = 2e-29, Method: Composition-based stats. Identities = 40/102 (39%), Positives = 55/102 (53%), Gaps = 4/102 (3%) Query: 1 MEKRTPHTRLSQVKKLVNAGQVR---TTRSALLNADELGLDFDGMCNVIIGLSESDFYKS 57 M + H+ L + N + R T++AL LGL M VI L+ +FYKS Sbjct: 1 MYRGQAHSPLPPISDPENGREARGNAFTKTALDGGRALGLTSSEMLAVIAALTRREFYKS 60 Query: 58 MTTYSDHTIWQDVYRPRLVTGQV-YLKITVIHDVLIVSFKEK 98 MTTY DH +WQDVY G+V Y+KIT+ + ++ FKEK Sbjct: 61 MTTYFDHKVWQDVYHAMTPAGKVAYIKITLRDNAPVIQFKEK 102 >UniRef50_B4SBL6 Putative uncharacterized protein n=4 Tax=Bacteria RepID=B4SBL6_PELPB Length = 102 Score = 129 bits (324), Expect = 3e-29, Method: Composition-based stats. Identities = 47/102 (46%), Positives = 59/102 (57%), Gaps = 4/102 (3%) Query: 1 MEKRTPHTRLSQVKKLVNAGQVR-TTRSALLNADELGLDFDGMCNVIIGLSESDFYKSMT 59 MEKRTPH L +V+ +V R T +AL LGL M V++ LS SDFYKSMT Sbjct: 1 MEKRTPHYHLDEVQAIVADENSRPFTVAALRGGLSLGLTEVEMRLVVLSLSRSDFYKSMT 60 Query: 60 TYSDHTIWQDVYRPRLVTG-QVYLKITVIHD--VLIVSFKEK 98 T++DH +WQDVY G VY+KIT D ++ FK K Sbjct: 61 THADHQLWQDVYHGETQDGVAVYIKITGYVDGRPPVIQFKAK 102 >UniRef50_A5GDY4 Putative uncharacterized protein n=5 Tax=Proteobacteria RepID=A5GDY4_GEOUR Length = 105 Score = 127 bits (319), Expect = 1e-28, Method: Composition-based stats. Identities = 37/100 (37%), Positives = 52/100 (52%), Gaps = 3/100 (3%) Query: 2 EKRTPHTRLSQVKKLVNA-GQVRTTRSALLNADELGLDFDGMCNVIIGLSESDFYKSMTT 60 EKR P L K + ++ T +AL +A LG + + I + FYKSMT Sbjct: 3 EKRKPTYDLDAFKATFASIEKLAVTGTALRSAAALGYGRAEIVDTIQTMQRGHFYKSMTA 62 Query: 61 YSDHTIWQDVYRPRLVTGQVYLKIT--VIHDVLIVSFKEK 98 Y+D +WQDVY G +Y+K T I + L++SFKEK Sbjct: 63 YADSRLWQDVYHVPSQAGVLYVKFTADAITEFLLLSFKEK 102 >UniRef50_Q2Y6X0 Putative uncharacterized protein n=1 Tax=Nitrosospira multiformis ATCC 25196 RepID=Q2Y6X0_NITMU Length = 100 Score = 125 bits (315), Expect = 4e-28, Method: Composition-based stats. Identities = 47/100 (47%), Positives = 61/100 (61%), Gaps = 2/100 (2%) Query: 1 MEKRTPHTRLSQVKKLVNAGQVRTTRSALLNADELGL-DFDGMCNVIIGLSESDFYKSMT 59 M+K PH L +VK L+ AGQ R TR A D+LG + + ++ L +DFYKSMT Sbjct: 1 MDKSKPHYELDKVKSLIRAGQYRITRVASEGGDKLGFKNTQEIAEFVLTLKRTDFYKSMT 60 Query: 60 TYSDHTIWQDVYRPRLVTGQ-VYLKITVIHDVLIVSFKEK 98 + +H WQDVY T + VYLK V +DVLI+SFKEK Sbjct: 61 SNMNHKEWQDVYHGDGPTKKVVYLKFIVTNDVLILSFKEK 100 >UniRef50_C6N7W8 Putative uncharacterized protein n=1 Tax=Legionella drancourtii LLAP12 RepID=C6N7W8_9GAMM Length = 106 Score = 118 bits (295), Expect = 7e-26, Method: Composition-based stats. Identities = 37/100 (37%), Positives = 50/100 (50%), Gaps = 3/100 (3%) Query: 2 EKRTPHTRLSQVKKLVNA-GQVRTTRSALLNADELGLDFDGMCNVIIGLSESDFYKSMTT 60 E R P L+ +KK N ++R T SA LG + I L+ +DFYKSM Sbjct: 7 ESRRPSYNLNDIKKAFNNEHKLRMTVSAKQGQLALGFSDHDVVEAIQSLTSTDFYKSMAP 66 Query: 61 YSD-HTIWQDVYRPRLVTGQVYLKITV-IHDVLIVSFKEK 98 + T WQDVY+ +Y+K V + LI+SFKEK Sbjct: 67 VTPGFTAWQDVYKANFKGVHLYIKFQVNTYGELILSFKEK 106 >UniRef50_Q07J17 Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris BisA53 RepID=Q07J17_RHOP5 Length = 103 Score = 117 bits (292), Expect = 1e-25, Method: Composition-based stats. Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 5/103 (4%) Query: 1 MEKR--TPHTRLSQVKKLVNAGQ-VRTTRSALLNADELGLDFDGMCNVIIGLSESDFYKS 57 M K P L ++K + + + T SAL +A LG + + VI + F+K+ Sbjct: 1 MAKSGSRPTHDLERIKSAFSTRKSLNITGSALRDAASLGYGSEEIIAVIQSIEPDHFHKT 60 Query: 58 MTTYSDHTIWQDVYRPRLVTGQVYLKIT--VIHDVLIVSFKEK 98 M + +WQDVYR ++Y+K T + + ++SFKE+ Sbjct: 61 MPSEKRPGLWQDVYRVPDREMELYVKFTSDTVTEFKLLSFKER 103 >UniRef50_C0GU76 Putative uncharacterized protein n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GU76_9DELT Length = 107 Score = 116 bits (291), Expect = 2e-25, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 4/101 (3%) Query: 1 MEKRTPHTRLSQVKKLVNAGQVRTTRSALLNADELGLDFDGMCNVIIGLSESDFYKSMTT 60 M K PH L + K L+++ + +SA A +L + + +V++ + SDF KS Sbjct: 1 MAKWKPHYDLKKSKSLIDSDKYIIVKSAKTTAFKLNFNEQRIKDVLLNIKPSDFSKSEED 60 Query: 61 YSDHTIWQDVYRPRLVTGQVYLKITVIHD----VLIVSFKE 97 + WQD Y+ ++Y+K + + +L++SFKE Sbjct: 61 WQIKGHWQDAYKTCYDGHRLYVKWKITENKEEHLLVLSFKE 101 >UniRef50_Q2LYD0 Hypothetical cytosolic protein n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LYD0_SYNAS Length = 113 Score = 112 bits (280), Expect = 4e-24, Method: Composition-based stats. Identities = 37/101 (36%), Positives = 51/101 (50%), Gaps = 5/101 (4%) Query: 2 EKRTPHTRLSQVKKLVNAGQVR-TTRSALLNADELGL-DFDGMCNVIIGLSESDFYKSMT 59 EKR PH LS K+L + + R T+ A A G + + NVI L FYKSMT Sbjct: 7 EKRRPHYELSLFKELFSNAKTRQITQIAHKGAASEGYMTVEDIENVIEQLGSKHFYKSMT 66 Query: 60 TYSDHTIWQDVYRPRLVTGQVYLKITV---IHDVLIVSFKE 97 TY H IWQDVY + ++Y+KI + +++ K Sbjct: 67 TYHSHEIWQDVYHYQDGDKKLYIKIQLSVDRDKAVLIQMKR 107 >UniRef50_A9DJA5 Putative uncharacterized protein n=2 Tax=Shewanella RepID=A9DJA5_9GAMM Length = 101 Score = 112 bits (279), Expect = 5e-24, Method: Composition-based stats. Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 1/96 (1%) Query: 3 KRTPHTRLSQV-KKLVNAGQVRTTRSALLNADELGLDFDGMCNVIIGLSESDFYKSMTTY 61 K LS V K L +R T++A A LG D + + I ++ S FYK+M + Sbjct: 5 KSKSTYVLSDVQKALRTVRSLRMTKTARRGATSLGFDDQDIVDAIQSITSSHFYKTMPSD 64 Query: 62 SDHTIWQDVYRPRLVTGQVYLKITVIHDVLIVSFKE 97 + DVY+ +YLK + ++VSFKE Sbjct: 65 TSGYPHHDVYKFVFKNVYIYLKFQDLAGHMVVSFKE 100 >UniRef50_A5G9Y0 Putative uncharacterized protein n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5G9Y0_GEOUR Length = 109 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 4/98 (4%) Query: 5 TPHTRLSQVKKLVNAGQVRT-TRSALLNADELGLDFDG-MCNVIIGLSESDFYKSMTTYS 62 TP+ L ++K+L+ R TR A LG D M + + ++ +F K M + Sbjct: 12 TPYYSLEKIKRLLRNSDTRIITRRDRQEAAALGYADDDEMVDRVSQVTLDEFKKKMPSED 71 Query: 63 DHTIWQDVYRPRLVTG-QVYLKITVIHDV-LIVSFKEK 98 WQDVY G ++Y+K+ + + +I+SFK K Sbjct: 72 MPGYWQDVYNSIEPDGTKIYIKLQIREESGVIISFKRK 109 >UniRef50_Q0AU88 Putative uncharacterized protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AU88_SYNWW Length = 115 Score = 44.6 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 34/68 (50%), Gaps = 4/68 (5%) Query: 30 LNADELGLDFDGMCNVIIGLSESDFYKSMTTYSDH--TIWQDVYRPRLVTGQVYLKITVI 87 +ELGL + + +++ L E +++++ + +W V+ + +Y+KI + Sbjct: 43 RCMEELGLRHNDVADILQSLDEKHYHETVPDFDFPGERLW--VFLYQYYEHVLYIKIKLR 100 Query: 88 HDVLIVSF 95 V+ VSF Sbjct: 101 ARVICVSF 108 >UniRef50_A7BW94 Putative uncharacterized protein n=1 Tax=Beggiatoa sp. PS RepID=A7BW94_9GAMM Length = 93 Score = 42.7 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%) Query: 1 MEKRTPHTRLSQVKKLVNA-GQVRTTRSALLNADELGLD 38 MEKR+ L +K+ ++R TR+A LG Sbjct: 37 MEKRSRTYDLDGIKEAFKTVEELRMTRTARRTIVGLGFR 75 >UniRef50_A7BUF6 Putative uncharacterized protein n=1 Tax=Beggiatoa sp. PS RepID=A7BUF6_9GAMM Length = 102 Score = 40.4 bits (93), Expect = 0.017, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 9/94 (9%) Query: 6 PHTRLSQV-KKLVNAGQVRTTRSALLNADELGLDFDGMCNVIIGLSESDFYKSMTTYSDH 64 P L + K + ++ +R A +A LG + + L+ S+F + T + Sbjct: 2 PFYSLETIHKIAKDENKIFLSRLAQRDASNLGYAKKDIAACLKALNHSNF---LNTQKYN 58 Query: 65 TIWQDVYRPRLVTG-----QVYLKITVIHDVLIV 93 I D YR ++Y+K+ + + IV Sbjct: 59 GIVMDAYRISCQVSSGNRDEIYIKLKLTSEYKIV 92 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.308 0.140 0.421 Lambda K H 0.267 0.0433 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 543,806,783 Number of Sequences: 3077464 Number of extensions: 16336607 Number of successful extensions: 45515 Number of sequences better than 1.0e-01: 19 Number of HSP's better than 0.1 without gapping: 44 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 45423 Number of HSP's gapped (non-prelim): 52 length of query: 98 length of database: 1,040,396,356 effective HSP length: 67 effective length of query: 31 effective length of database: 834,206,268 effective search space: 25860394308 effective search space used: 25860394308 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 87 (38.0 bits)