BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (206 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q4FUD2 30S ribosomal protein S4 n=313 Tax=cellular orga... 275 7e-73 UniRef50_B5EFS6 30S ribosomal protein S4 n=51 Tax=Bacteria RepID... 224 2e-57 UniRef50_A0PXX4 30S ribosomal protein S4 A n=36 Tax=Bacteria Rep... 223 3e-57 UniRef50_B9L6T8 30S ribosomal protein S4 n=447 Tax=cellular orga... 218 1e-55 UniRef50_A9B436 30S ribosomal protein S4 n=3 Tax=Bacteria RepID=... 214 1e-54 UniRef50_Q01WB9 30S ribosomal protein S4 n=301 Tax=Bacteria RepI... 200 2e-50 UniRef50_B9KZW1 30S ribosomal protein S4 n=56 Tax=Bacteria RepID... 193 3e-48 UniRef50_A9BFZ1 30S ribosomal protein S4 n=32 Tax=Bacteria RepID... 191 1e-47 UniRef50_Q3APJ9 30S ribosomal protein S4 n=12 Tax=Bacteroidetes/... 190 2e-47 UniRef50_Q2JFE9 30S ribosomal protein S4 n=124 Tax=Bacteria RepI... 182 5e-45 UniRef50_Q1WT66 30S ribosomal protein S4 n=12 Tax=Bacteria RepID... 178 1e-43 UniRef50_A0M574 30S ribosomal protein S4 n=23 Tax=Bacteria RepID... 176 4e-43 UniRef50_B0VI05 30S ribosomal subunit protein S4 n=6 Tax=Bacteri... 175 1e-42 UniRef50_D1C704 Ribosomal protein S4 n=2 Tax=Bacteria RepID=D1C7... 174 2e-42 UniRef50_A9KJG7 30S ribosomal protein S4 n=79 Tax=Bacteria RepID... 174 2e-42 UniRef50_A5KQD5 Putative uncharacterized protein n=3 Tax=Ruminoc... 172 5e-42 UniRef50_C6PD21 RNA-binding S4 domain protein n=1 Tax=Thermoanae... 172 7e-42 UniRef50_Q2SSN9 30S ribosomal protein S4 n=25 Tax=Mycoplasmatace... 171 2e-41 UniRef50_D0JAU4 30S ribosomal protein S4 n=1 Tax=Blattabacterium... 166 3e-40 UniRef50_B5Y961 Ribosomal protein S4 n=1 Tax=Coprothermobacter p... 163 3e-39 UniRef50_A9MAK7 30S ribosomal protein S4 n=56 Tax=Alphaproteobac... 162 5e-39 UniRef50_C9KPD3 Ribosomal protein S4 n=1 Tax=Mitsuokella multaci... 161 1e-38 UniRef50_C9M7W9 Ribosomal protein S4 n=2 Tax=Synergistaceae RepI... 161 2e-38 UniRef50_B7J2H5 30S ribosomal protein S4 n=21 Tax=Borrelia RepID... 160 3e-38 UniRef50_UPI00016C3E34 30S ribosomal protein S4 n=1 Tax=Gemmata ... 158 1e-37 UniRef50_A4WUP0 30S ribosomal protein S4 n=66 Tax=Bacteria RepID... 155 9e-37 UniRef50_A5GRL5 30S ribosomal protein S4 n=52 Tax=cellular organ... 154 1e-36 UniRef50_Q3M534 30S ribosomal protein S4 n=946 Tax=cellular orga... 154 2e-36 UniRef50_Q2JUD6 30S ribosomal protein S4 n=92 Tax=cellular organ... 151 1e-35 UniRef50_D1J7L7 30S ribosomal protein S4 n=2 Tax=Mycoplasma RepI... 151 2e-35 UniRef50_UPI00016B2693 ribosomal protein S4 n=1 Tax=candidate di... 151 2e-35 UniRef50_A0T0H2 30S ribosomal protein S4, chloroplastic n=4 Tax=... 149 4e-35 UniRef50_C7LKJ2 30S ribosomal subunit protein S4 n=1 Tax=Candida... 149 8e-35 UniRef50_B1X067 30S ribosomal protein S4 n=18 Tax=cellular organ... 148 1e-34 UniRef50_B2S2Q4 30S ribosomal protein S4 n=4 Tax=Treponema RepID... 145 8e-34 UniRef50_Q3KL69 30S ribosomal protein S4 n=17 Tax=Chlamydiales R... 145 1e-33 UniRef50_B7T1T6 Ribosomal protein S4 n=1 Tax=Vaucheria litorea R... 142 8e-33 UniRef50_D1R5K6 Putative uncharacterized protein n=1 Tax=Parachl... 140 2e-32 UniRef50_C1TPK7 SSU ribosomal protein S4P n=1 Tax=Dethiosulfovib... 139 7e-32 UniRef50_B8HXV1 30S ribosomal protein S4 n=431 Tax=cellular orga... 139 8e-32 UniRef50_C3PN57 30S ribosomal protein S4 n=41 Tax=cellular organ... 136 4e-31 UniRef50_D2BEX9 30S ribosomal protein S4 n=1 Tax=Streptosporangi... 135 6e-31 UniRef50_C9RJV5 Ribosomal protein S4 n=1 Tax=Fibrobacter succino... 135 7e-31 UniRef50_P58134 Plastid 30S ribosomal protein S4 n=1 Tax=Euglena... 135 8e-31 UniRef50_Q1CXF1 30S ribosomal protein S4 B n=2 Tax=Cystobacterin... 134 3e-30 UniRef50_P56799 30S ribosomal protein S4, chloroplastic n=803 Ta... 133 4e-30 UniRef50_Q1H2K1 30S ribosomal protein S4 n=6 Tax=Proteobacteria ... 132 7e-30 UniRef50_Q7UXM6 30S ribosomal protein S4 n=6 Tax=Planctomycetace... 130 2e-29 UniRef50_Q5C773 SJCHGC09636 protein (Fragment) n=1 Tax=Schistoso... 130 3e-29 UniRef50_Q0ZJ18 30S ribosomal protein S4, chloroplastic n=973 Ta... 129 8e-29 UniRef50_Q47R66 30S ribosomal protein S4 n=2 Tax=Nocardiopsaceae... 128 1e-28 UniRef50_A6TSI5 30S ribosomal protein S4 B n=42 Tax=Clostridiale... 127 2e-28 UniRef50_A5CCV1 30S ribosomal protein S4 n=58 Tax=Bacteria RepID... 125 6e-28 UniRef50_Q1ACM7 30S ribosomal protein S4, chloroplastic n=1359 T... 125 7e-28 UniRef50_A5CRZ7 30S ribosomal protein S4 n=75 Tax=Actinobacteria... 122 7e-27 UniRef50_C1ABG6 30S ribosomal protein S4 n=1 Tax=Gemmatimonas au... 122 1e-26 UniRef50_C6B8C6 RNA-binding S4 domain protein n=1 Tax=Rhizobium ... 117 2e-25 UniRef50_Q2GDI3 30S ribosomal protein S4 n=3 Tax=Anaplasmataceae... 114 1e-24 UniRef50_O22020 30S ribosomal protein S4, chloroplastic n=1 Tax=... 113 5e-24 UniRef50_P48270 30S ribosomal protein S4, chloroplastic n=6 Tax=... 112 7e-24 UniRef50_Q6MIP0 30S ribosomal protein S4 B n=1 Tax=Bdellovibrio ... 110 4e-23 UniRef50_B2X261 Ribosomal protein S4 (Fragment) n=1 Tax=Floydiel... 108 1e-22 UniRef50_Q00NZ9 Rps4 (Fragment) n=5 Tax=Embryophyta RepID=Q00NZ9... 107 2e-22 UniRef50_B2X1Z7 Ribosomal protein S4 n=1 Tax=Oedogonium cardiacu... 107 3e-22 UniRef50_Q06SJ3 30S ribosomal protein S4, chloroplastic n=2 Tax=... 105 7e-22 UniRef50_Q8WL66 Ribosomal protein small subunit 4 (Fragment) n=1... 104 2e-21 UniRef50_Q85XL2 Small ribosomal protein 4 (Fragment) n=2 Tax=Emb... 104 2e-21 UniRef50_Q05FK4 30S ribosomal protein S4 n=1 Tax=Candidatus Cars... 103 3e-21 UniRef50_O21263 Ribosomal protein S4, mitochondrial n=1 Tax=Recl... 103 3e-21 UniRef50_Q6VQL8 Rps4 n=1 Tax=Psammisia dolichopoda RepID=Q6VQL8_... 103 4e-21 UniRef50_UPI000196B648 hypothetical protein CATMIT_01694 n=1 Tax... 103 4e-21 UniRef50_C6UNA0 30S ribosomal subunit protein S4 n=1 Tax=Candida... 102 7e-21 UniRef50_Q06J34 30S ribosomal protein S4, chloroplastic n=1 Tax=... 102 1e-20 UniRef50_D0PPV5 Small ribosomal protein 4 (Fragment) n=1 Tax=Aus... 97 4e-19 UniRef50_D1N636 Ribosomal protein S4 n=1 Tax=Victivallis vadensi... 96 8e-19 UniRef50_Q9TCC4 Ribosomal protein S4 n=1 Tax=Nephroselmis olivac... 91 3e-17 UniRef50_Q0P3J0 Mitochondrion, complete genome n=1 Tax=Ostreococ... 86 1e-15 UniRef50_Q2EEX1 Plastid 30S ribosomal protein S4 n=1 Tax=Helicos... 85 1e-15 UniRef50_UPI0001699071 30S ribosomal protein S4 n=1 Tax=Endorift... 84 3e-15 UniRef50_C1IXJ0 Ribosomal protein S4 n=1 Tax=Picea sitchensis Re... 82 1e-14 UniRef50_C1KRH3 Ribosomal protein S4 n=1 Tax=Micromonas sp. RCC2... 77 4e-13 UniRef50_P26866 Ribosomal protein S4, mitochondrial n=4 Tax=Stre... 77 5e-13 UniRef50_Q9F8G5 Ribosomal protein S4 (Fragment) n=1 Tax=Carboxyd... 76 8e-13 UniRef50_Q0YR48 30S ribosomal protein S4 n=1 Tax=Chlorobium ferr... 76 9e-13 UniRef50_A6YEB5 Ribosomal protein S4 n=1 Tax=Chlorokybus atmophy... 75 2e-12 UniRef50_Q2WGC2 Ribosomal protein S4 (Fragment) n=2 Tax=Selagine... 73 6e-12 UniRef50_UPI000169316E RpsD n=1 Tax=Paenibacillus larvae subsp. ... 73 6e-12 UniRef50_Q9G884 Ribosomal protein S4 n=1 Tax=Malawimonas jakobif... 71 2e-11 UniRef50_Q7YN81 Apicoplast 30S ribosomal protein S4 n=1 Tax=Eime... 71 3e-11 UniRef50_Q9XQQ7 Apicoplast 30S ribosomal protein S4 n=1 Tax=Toxo... 68 1e-10 UniRef50_P0C5Y3 Ribosomal protein S4, mitochondrial n=3 Tax=Dict... 65 1e-09 UniRef50_B2MWU8 Ribosomal protein S4 n=1 Tax=Hemiselmis andersen... 65 1e-09 UniRef50_Q0YR49 Ribosomal protein S4 n=1 Tax=Chlorobium ferrooxi... 64 3e-09 UniRef50_Q47611 RpsD protein (Fragment) n=1 Tax=Escherichia coli... 63 7e-09 UniRef50_Q9G8X0 Ribosomal protein S4 n=1 Tax=Rhodomonas salina R... 59 8e-08 UniRef50_C6FG20 Ribosomal protein S4 n=2 Tax=Isoetes engelmannii... 59 1e-07 UniRef50_C1KRA9 Ribosomal protein S4 n=1 Tax=Micromonas pusilla ... 58 2e-07 UniRef50_P46755 Ribosomal protein S4, mitochondrial n=1 Tax=Acan... 57 5e-07 UniRef50_Q9T225 Ribosomal protein S4 n=3 Tax=Phytophthora RepID=... 56 7e-07 UniRef50_P46743 Ribosomal protein S4, mitochondrial n=1 Tax=Prot... 55 2e-06 UniRef50_C4R204 Mitochondrial ribosomal component of the small s... 55 2e-06 UniRef50_Q2TUL0 Ribosomal protein S4 n=11 Tax=Phaeophyceae RepID... 54 3e-06 UniRef50_Q3S297 Ribosomal protein S4 n=1 Tax=Thalassiosira pseud... 51 3e-05 UniRef50_Q2TUD0 Ribosomal protein S4 n=1 Tax=Dictyota dichotoma ... 50 4e-05 UniRef50_B2XXA8 Ribosomal protein S4 n=1 Tax=Dictyostelium fasci... 50 5e-05 UniRef50_Q6E781 Ribosomal protein S4 n=1 Tax=Saprolegnia ferax R... 49 8e-05 UniRef50_D2JP76 Ribosomal protein S4 n=1 Tax=Synedra acus RepID=... 49 1e-04 UniRef50_Q31708 Ribosomal protein S4, mitochondrial n=44 Tax=Mag... 49 1e-04 UniRef50_C7ZPJ0 Putative uncharacterized protein n=2 Tax=Nectria... 48 2e-04 UniRef50_B2XX60 Ribosomal protein S4 n=2 Tax=Polysphondylium pal... 48 2e-04 UniRef50_P27929 37S ribosomal protein NAM9, mitochondrial n=13 T... 47 3e-04 UniRef50_O60063 Putative 40S ribosomal protein S4-like n=2 Tax=S... 47 4e-04 UniRef50_B6HQM4 Pc22g11690 protein n=15 Tax=Eurotiomycetidae Rep... 47 4e-04 UniRef50_Q2H0I0 Putative uncharacterized protein n=1 Tax=Chaetom... 47 6e-04 UniRef50_A7IAH7 30S ribosomal protein S4P n=5 Tax=Methanomicrobi... 45 0.001 UniRef50_B1L795 30S ribosomal protein S4P n=1 Tax=Candidatus Kor... 45 0.002 UniRef50_Q0W1V5 30S ribosomal protein S4P n=1 Tax=uncultured met... 45 0.002 UniRef50_C5DZN7 ZYRO0G05918p n=1 Tax=Zygosaccharomyces rouxii Re... 45 0.002 UniRef50_C0NY83 NAM9+ protein n=3 Tax=Onygenales RepID=C0NY83_AJECG 45 0.002 UniRef50_D1B2S0 Hemolysin A n=1 Tax=Sulfurospirillum deleyianum ... 45 0.002 UniRef50_Q74NF7 30S ribosomal protein S4P n=4 Tax=Archaea RepID=... 45 0.002 UniRef50_Q8W9R0 Ribosomal protein S4 n=1 Tax=Mesostigma viride R... 44 0.002 UniRef50_Q6CF39 YALI0B10494p n=1 Tax=Yarrowia lipolytica RepID=Q... 44 0.003 UniRef50_A7F6V8 Putative uncharacterized protein n=2 Tax=Sclerot... 44 0.004 UniRef50_D1Z0V6 30S ribosomal protein S4P n=1 Tax=Methanocella p... 44 0.005 UniRef50_A0SNY6 Ribosomal protein S4 n=1 Tax=Candidatus Micrarch... 43 0.008 UniRef50_C3N052 30S ribosomal protein S4P n=29 Tax=Archaea RepID... 42 0.009 UniRef50_B2W5M8 Putative uncharacterized protein n=2 Tax=Pleospo... 42 0.009 UniRef50_B2B283 Predicted CDS Pa_6_5850 n=1 Tax=Podospora anseri... 42 0.010 UniRef50_A4WM27 30S ribosomal protein S4P n=5 Tax=Thermoproteace... 42 0.012 UniRef50_Q18G54 30S ribosomal protein S4P n=9 Tax=Halobacteriace... 42 0.013 UniRef50_C5JVX1 30S ribosomal subunit S4 n=4 Tax=Onygenales RepI... 42 0.015 UniRef50_Q46GC8 30S ribosomal protein S4P n=3 Tax=Methanosarcina... 41 0.021 UniRef50_B8PNL6 Predicted protein n=2 Tax=Agaricomycetes RepID=B... 41 0.025 UniRef50_A6QVF5 Putative uncharacterized protein n=2 Tax=Onygena... 40 0.034 UniRef50_A8MDS5 30S ribosomal protein S4P n=6 Tax=Thermoprotei R... 40 0.055 UniRef50_Q5KLM6 Nam9 protein, mitochondrial, putative n=2 Tax=Fi... 39 0.087 >UniRef50_Q4FUD2 30S ribosomal protein S4 n=313 Tax=cellular organisms RepID=RS4_PSYA2 Length = 213 Score = 275 bits (703), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 141/213 (66%), Positives = 169/213 (79%), Gaps = 7/213 (3%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIE-QAPGQHGARKPRLSDYGVQLREKQ 59 MARY+GPKLKLSRREGTDL LKSGV+ D K K + PGQHG + + S+Y +QLREKQ Sbjct: 1 MARYIGPKLKLSRREGTDLGLKSGVKPYDVKTKKSARPPGQHGVSRNKSSEYSLQLREKQ 60 Query: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119 KV+RIYGVLERQF NYYKEAAR +G TGENLLA+LE RLDNVVYRMGFG+TRAEARQLVS Sbjct: 61 KVKRIYGVLERQFANYYKEAARKRGATGENLLAMLESRLDNVVYRMGFGSTRAEARQLVS 120 Query: 120 HKAIMVN--GRV----VNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEV 173 H+ +MV GR VNI S Q+ DV++I+EK+++Q R+K A+ELA QR P WL+V Sbjct: 121 HRTVMVKKAGRDEFVRVNIPSIQLQDGDVIAIQEKSREQLRIKNAIELATQRGIPEWLDV 180 Query: 174 DAGKMEGTFKRKPERSDLSADINEHLIVELYSK 206 D K++GTFK+ P+R DL A+INE LIVELYSK Sbjct: 181 DHSKLQGTFKKAPDRIDLPAEINESLIVELYSK 213 >UniRef50_B5EFS6 30S ribosomal protein S4 n=51 Tax=Bacteria RepID=RS4_GEOBB Length = 208 Score = 224 bits (570), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 115/209 (55%), Positives = 145/209 (69%), Gaps = 4/209 (1%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQ---APGQHGARKPRLSDYGVQLRE 57 MARY GP +L RREG++LFLK G R KC I++ PGQHG + ++SDYGVQLRE Sbjct: 1 MARYTGPSCRLCRREGSELFLK-GERCYTDKCAIKRRSYPPGQHGQGRIKVSDYGVQLRE 59 Query: 58 KQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQL 117 KQKVRRIYG+LE QFR Y++ A R+KG TGENLL +LE RLDNV YR+GF +R EARQL Sbjct: 60 KQKVRRIYGILENQFRGYFETADRMKGVTGENLLFILERRLDNVAYRLGFATSRDEARQL 119 Query: 118 VSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGK 177 V H +NG+ VNI S QV DV+ +REK++K + + +LE +R P WLE++ Sbjct: 120 VRHGHFTLNGKKVNIPSLQVKAGDVLQLREKSRKVAAISESLEGVVRRGIPQWLELEKDA 179 Query: 178 MEGTFKRKPERSDLSADINEHLIVELYSK 206 +GT K P R D++ I E LIVELYSK Sbjct: 180 FKGTVKAMPVREDITMPIQEQLIVELYSK 208 >UniRef50_A0PXX4 30S ribosomal protein S4 A n=36 Tax=Bacteria RepID=RS4A_CLONN Length = 206 Score = 223 bits (569), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 115/209 (55%), Positives = 145/209 (69%), Gaps = 6/209 (2%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQ---APGQHGARKPRLSDYGVQLRE 57 MARY+G +L RREG LFLK G R KC + APGQHG + +LS+YGVQLRE Sbjct: 1 MARYIGATCRLCRREGMKLFLK-GDRCYTDKCAFARRSYAPGQHGQGRKKLSNYGVQLRE 59 Query: 58 KQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQL 117 KQK RRIYG+LE QFR YY++A ++G TGENLL LLE RLDNVVY++GFG++RAEARQL Sbjct: 60 KQKARRIYGILEAQFRKYYEKAETMRGITGENLLKLLEMRLDNVVYKLGFGSSRAEARQL 119 Query: 118 VSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGK 177 V+H +VNG+ V+I SYQVS DV+S+REK++ + K E + P WLE + Sbjct: 120 VTHGHFLVNGKKVDIISYQVSAGDVISVREKSRGTEKFKTFAE--NPKTLPAWLEGNIEN 177 Query: 178 MEGTFKRKPERSDLSADINEHLIVELYSK 206 EG +P R+D+ +NE LIVELYSK Sbjct: 178 FEGKVIAEPTRADIDVPVNETLIVELYSK 206 >UniRef50_B9L6T8 30S ribosomal protein S4 n=447 Tax=cellular organisms RepID=RS4_NAUPA Length = 208 Score = 218 bits (554), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 112/209 (53%), Positives = 150/209 (71%), Gaps = 4/209 (1%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQ---APGQHGARKPRLSDYGVQLRE 57 MARY GP K+ RR G L LK G R + K +++ APGQHG R+ ++S+YG+QLRE Sbjct: 1 MARYTGPVEKIERRLGVSLELK-GERRLAGKSALDKRPYAPGQHGQRRTKISEYGLQLRE 59 Query: 58 KQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQL 117 KQK++ YGVLE+QFR +++EA R +GNTGENL+ LLE RLDNVVYRMGF +TR ARQL Sbjct: 60 KQKIKFYYGVLEKQFRKFFREANRQEGNTGENLIKLLERRLDNVVYRMGFASTRRFARQL 119 Query: 118 VSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGK 177 V+H I+VNG+ VNI SY V D + IREK+K +++ ALEL++Q W++VD K Sbjct: 120 VTHGHILVNGKKVNIPSYLVKEGDRIEIREKSKNNVQIQRALELSQQTGIAPWVDVDKEK 179 Query: 178 MEGTFKRKPERSDLSADINEHLIVELYSK 206 + G F+R PER +++ + E L+VELYSK Sbjct: 180 LVGVFQRVPEREEVNIPVEERLVVELYSK 208 >UniRef50_A9B436 30S ribosomal protein S4 n=3 Tax=Bacteria RepID=RS4_HERA2 Length = 211 Score = 214 bits (546), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 120/216 (55%), Positives = 145/216 (67%), Gaps = 15/216 (6%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKI-----EQAPGQHGA--RKPRLSDYGV 53 MARY GP KLSRREG DL LKSG ++ K+ Q PGQHGA R+ +LSDYGV Sbjct: 1 MARYTGPVCKLSRREGVDLMLKSG----NSGRKVLERRGSQPPGQHGASVRRRQLSDYGV 56 Query: 54 QLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAE 113 QLREKQKVRRIYGVLERQFR YY A R G TG LL +LE RLDNVV+R+G+ TRA+ Sbjct: 57 QLREKQKVRRIYGVLERQFRRYYGIATRTTGQTGAVLLQILERRLDNVVFRLGYAVTRAQ 116 Query: 114 ARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREK---PTW 170 ARQLV+H I VNGR +I S V DV+ +R +++K+ K LE +Q + P+W Sbjct: 117 ARQLVNHGHITVNGRKTDIPSALVEVGDVIGVRAESRKRDYFK-DLEETKQLNRVSPPSW 175 Query: 171 LEVDAGKMEGTFKRKPERSDLSADINEHLIVELYSK 206 L +DAGKMEG + P R +L INE LIVE YS+ Sbjct: 176 LSLDAGKMEGVVQTFPSREELDMSINEQLIVEFYSR 211 >UniRef50_Q01WB9 30S ribosomal protein S4 n=301 Tax=Bacteria RepID=RS4_SOLUE Length = 210 Score = 200 bits (509), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 108/211 (51%), Positives = 141/211 (66%), Gaps = 6/211 (2%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQ---APGQHGA-RKPRLSDYGVQLR 56 MARY+GP + RREG L+LK G R KC IE+ PGQHG R ++ YG+QLR Sbjct: 1 MARYIGPVCRQCRREGMKLYLK-GERCHSEKCAIEKRNFIPGQHGKDRAKKIVGYGLQLR 59 Query: 57 EKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQ 116 EKQKVRR+YGVLERQFRN +++AA KG TGENL+ LE RLD+V+YRMGFG +RA+ARQ Sbjct: 60 EKQKVRRVYGVLERQFRNAFEKAALQKGITGENLMQNLERRLDSVIYRMGFGTSRAQARQ 119 Query: 117 LVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAG 176 +V H I VNGR NI S ++ D +++RE +K + + +A + P W+EVD Sbjct: 120 VVRHGHINVNGRKCNIPSALINVGDEITVRETSKNNATILSARDATAHAPAPNWIEVDRE 179 Query: 177 KMEGTFKRKPERSDL-SADINEHLIVELYSK 206 ++G + P+R DL +NE LIVELYSK Sbjct: 180 GLKGRVQSLPKREDLVQIQLNEQLIVELYSK 210 >UniRef50_B9KZW1 30S ribosomal protein S4 n=56 Tax=Bacteria RepID=RS4_THERP Length = 217 Score = 193 bits (490), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 101/219 (46%), Positives = 137/219 (62%), Gaps = 16/219 (7%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKI-------EQAPGQHG-----ARKPRL 48 M RY+GP +L RREG L+LK G R KC I PGQHG AR+P Sbjct: 1 MGRYIGPVCRLCRREGVKLYLK-GERCFGPKCPIVKRHPNKNYPPGQHGPTQRAARRP-- 57 Query: 49 SDYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFG 108 S++ +QLREKQK++R+YG+LERQFR ++ EA R G TG+NLL +LE RLDNVVYR+GF Sbjct: 58 SEFALQLREKQKLKRVYGILERQFRRHFDEAERRPGLTGDNLLQILESRLDNVVYRLGFA 117 Query: 109 ATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKP 168 +R +ARQLV H +VNGR +I SYQV P D++++R +++++ K E A+ + P Sbjct: 118 DSRRQARQLVRHGHFLVNGRKTDIPSYQVRPGDIIAVRPESRRREYFKVLEETAKNKAVP 177 Query: 169 TWLEVDAGKMEGTFKRKPERSDLS-ADINEHLIVELYSK 206 WL D M G R P R ++ +N L+VE YS+ Sbjct: 178 AWLSRDLETMSGRVLRLPTRDEIDIPPVNTQLVVEYYSR 216 >UniRef50_A9BFZ1 30S ribosomal protein S4 n=32 Tax=Bacteria RepID=RS4_PETMO Length = 211 Score = 191 bits (485), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 101/212 (47%), Positives = 143/212 (67%), Gaps = 7/212 (3%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQ---APGQHGARKPRLSDYGVQLRE 57 MARY+GP KLSRREG +L+LK G R+ K + + PGQHG +K +L+ Y +QLR Sbjct: 1 MARYIGPLEKLSRREGINLYLK-GKRSYTEKSALRKRNYVPGQHGRQKQKLTQYAMQLRS 59 Query: 58 KQKVRRIYGVLERQFRNYYKEAARLK-GNTGENLLALLEGRLDNVVYRMGFGATRAEARQ 116 KQ ++R+YG++ERQFRN ++EA R + G TGE L+ LLE RLD+VVY+MGF R ARQ Sbjct: 60 KQALKRMYGLMERQFRNTFEEAERSRSGETGEVLMQLLERRLDSVVYQMGFAPNRRTARQ 119 Query: 117 LVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQ--REKPTWLEVD 174 +V+H I+VNG+ VNI SY+V DV+ ++EK++ +V+ LEL ++ R P WL V+ Sbjct: 120 IVTHGHILVNGKKVNIPSYRVKVGDVIEVKEKSRNIQQVREGLELVQEGYRNIPNWLNVE 179 Query: 175 AGKMEGTFKRKPERSDLSADINEHLIVELYSK 206 GTF+R P+ ++ + I+ELYSK Sbjct: 180 IENFRGTFQRLPKIDEMDVPVPLTNIIELYSK 211 >UniRef50_Q3APJ9 30S ribosomal protein S4 n=12 Tax=Bacteroidetes/Chlorobi group RepID=RS4_CHLCH Length = 203 Score = 190 bits (483), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 101/210 (48%), Positives = 137/210 (65%), Gaps = 11/210 (5%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQ---APGQHG-ARKPRLSDYGVQLR 56 MAR+ G K+SRR G L A + +E+ PGQHG RK ++S+Y +QLR Sbjct: 1 MARFRGSITKVSRRLGIAL-------APKAEKYLERRPFPPGQHGQGRKGKISEYALQLR 53 Query: 57 EKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQ 116 EKQK++ +YG+LE+QFRNYYK+A +G TG+NL+ LLE RLDN+V+R GF +RA ARQ Sbjct: 54 EKQKMKYLYGILEKQFRNYYKKAVAQRGVTGDNLVKLLERRLDNIVFRAGFSPSRAGARQ 113 Query: 117 LVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAG 176 LVSH + VNG+ V+I SY VSP DV+ R+K+K S V +L + P W++VD Sbjct: 114 LVSHGHVTVNGKKVDIPSYLVSPADVMEFRQKSKNMSAVTDSLNKTPESRIPAWIQVDKA 173 Query: 177 KMEGTFKRKPERSDLSADINEHLIVELYSK 206 + F PER+D+ + NE L+VELYSK Sbjct: 174 HQKAVFLSVPERADIQEEFNEQLVVELYSK 203 >UniRef50_Q2JFE9 30S ribosomal protein S4 n=124 Tax=Bacteria RepID=RS4_FRASC Length = 209 Score = 182 bits (463), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 105/210 (50%), Positives = 127/210 (60%), Gaps = 5/210 (2%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIE---QAPGQHGARKPRLSDYGVQLRE 57 MARY G K RRE T LFLK G + KC IE PG+HG + + S+Y +Q RE Sbjct: 1 MARYTGADCKRCRREKTKLFLK-GSKCDTPKCPIEIRPYPPGEHGRGRTKDSEYLLQKRE 59 Query: 58 KQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQL 117 KQK RIYGVLE+QFR YY EA R G TG+ LL +LE RLDNVVYR GF +R ARQ Sbjct: 60 KQKCARIYGVLEKQFRGYYDEANRRAGKTGDELLKILESRLDNVVYRGGFAPSRDAARQA 119 Query: 118 VSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQ-REKPTWLEVDAG 176 V H + VNGR V+I SY++S ND+V I KA++ + A E A Q R P WLEV Sbjct: 120 VRHGHVQVNGRKVDIPSYRISENDIVEIAPKARELTPFIVARETAGQGRAVPAWLEVIPS 179 Query: 177 KMEGTFKRKPERSDLSADINEHLIVELYSK 206 ++ P R + + E LIVELYSK Sbjct: 180 QLRILVHSLPARQVIDTQVQEQLIVELYSK 209 >UniRef50_Q1WT66 30S ribosomal protein S4 n=12 Tax=Bacteria RepID=RS4_LACS1 Length = 201 Score = 178 bits (451), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 101/208 (48%), Positives = 136/208 (65%), Gaps = 9/208 (4%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGA-RKPRLSDYGVQLREKQ 59 M+RY GP K+SRR G L SG + APGQHG R+ LS+YG+QLREKQ Sbjct: 1 MSRYTGPSWKVSRRLGFSL---SGTGK--ELSRRPYAPGQHGQDRRGSLSEYGLQLREKQ 55 Query: 60 KVRRIYGVLERQFRNYYKEAARLK-GNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 K+R YG+ ERQF N +K A +++ G G+N + LLE RLDNVVYR+G +TR +ARQLV Sbjct: 56 KLRMTYGLTERQFSNLFKRAGKIREGKHGDNFMILLERRLDNVVYRLGLASTRRQARQLV 115 Query: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 +H I V+G+ V+I SY+V P V+S+RE++K VK ALE R ++ D KM Sbjct: 116 NHGHITVDGKRVDIPSYEVEPGQVISLRERSKDLQIVKEALEAVVGR--VPFVNFDENKM 173 Query: 179 EGTFKRKPERSDLSADINEHLIVELYSK 206 EGT R P+R +L A+I+E L+VE Y++ Sbjct: 174 EGTLVRLPDREELDANIDEALVVEFYNR 201 >UniRef50_A0M574 30S ribosomal protein S4 n=23 Tax=Bacteria RepID=RS4_GRAFK Length = 201 Score = 176 bits (446), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 100/210 (47%), Positives = 129/210 (61%), Gaps = 13/210 (6%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKC--KIEQAPGQHGA--RKPRLSDYGVQLR 56 MARY GPK K++R+ G +F D K K PGQHG R+ + S+Y +QL Sbjct: 1 MARYTGPKTKIARKFGEAIFG-------DDKSFEKRNYPPGQHGNNRRRGKKSEYAIQLM 53 Query: 57 EKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQ 116 EKQK + YG+LERQFRN +++A R +G TGE LL L E RLDNVVYRMG +R ARQ Sbjct: 54 EKQKAKYTYGILERQFRNMFEKATRAQGITGEVLLQLCESRLDNVVYRMGVAPSRRAARQ 113 Query: 117 LVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAG 176 LV H+ I VNG +VNI SY + DVV +REK+K + V+ + L+ W+ ++ Sbjct: 114 LVGHRHITVNGELVNIPSYHLKAGDVVGVREKSKSLAVVQES--LSNNSSVYEWISWNSE 171 Query: 177 KMEGTFKRKPERSDLSADINEHLIVELYSK 206 K EGTF P R + +INE IVELYSK Sbjct: 172 KKEGTFVAVPGRVQIPENINEQFIVELYSK 201 >UniRef50_B0VI05 30S ribosomal subunit protein S4 n=6 Tax=Bacteria RepID=B0VI05_9BACT Length = 205 Score = 175 bits (443), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 91/207 (43%), Positives = 128/207 (61%), Gaps = 3/207 (1%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR-KPRLSDYGVQLREKQ 59 MA+Y GPK K+ R+ G +++ + I +K K GQHG + +LSDYG+ L+EKQ Sbjct: 1 MAKYTGPKAKICRKFGENIYGNAKYDKILSKRKYPA--GQHGRNLRRKLSDYGLHLKEKQ 58 Query: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119 K+R Y ++E+QF NY+K+AA+ G TG+NLL LLE RLDNVVYRMGF TR +ARQ ++ Sbjct: 59 KMRHTYCLMEKQFSNYFKKAAKAPGVTGDNLLQLLERRLDNVVYRMGFAVTRMQARQFIN 118 Query: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179 H +VNGR V+I SY V D++ +R K+K + A++ E +W+ VD Sbjct: 119 HGHFLVNGRKVDIPSYLVKAGDIIEVRPKSKGMKPLLEAMDKTEVTSPYSWMSVDKENFR 178 Query: 180 GTFKRKPERSDLSADINEHLIVELYSK 206 G F P S++ + LIVE YSK Sbjct: 179 GQFNSIPAVSEIPVTCDLRLIVEFYSK 205 >UniRef50_D1C704 Ribosomal protein S4 n=2 Tax=Bacteria RepID=D1C704_SPHTD Length = 203 Score = 174 bits (441), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 92/207 (44%), Positives = 136/207 (65%), Gaps = 5/207 (2%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPR-LSDYGVQLREKQ 59 MARY GPK K+SRREG +L +G R+ + +++ PG H +PR +++YG QLREKQ Sbjct: 1 MARYTGPKHKISRREGINL---TGTRSRSLERRLKTPPGAHAHARPRRMTEYGRQLREKQ 57 Query: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119 K++R +G+LE+QFR +++A R K TG L+ LLE RLDNVVYR+GF TR ARQLV+ Sbjct: 58 KLKRHFGMLEKQFRRTFQDARRSKEPTGTALVKLLESRLDNVVYRLGFTPTRPMARQLVN 117 Query: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179 H ++VNGR V+I SY+VSP D +++ EKA + V+ AL+ A + P+WL + + Sbjct: 118 HGHVLVNGRRVDIPSYRVSPGDTIALTEKAAEIPDVQEALQDAGH-QIPSWLSREGTQPV 176 Query: 180 GTFKRKPERSDLSADINEHLIVELYSK 206 G +P +L ++ LI+ Y++ Sbjct: 177 GRVISEPNPEELDIPVDIELIIAFYAR 203 >UniRef50_A9KJG7 30S ribosomal protein S4 n=79 Tax=Bacteria RepID=RS4_CLOPH Length = 198 Score = 174 bits (441), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 106/208 (50%), Positives = 132/208 (63%), Gaps = 12/208 (5%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARK-PRLSDYGVQLREKQ 59 MAR + P LK R G L+ ID K ++ AR ++S+YG QLREKQ Sbjct: 1 MARDMSPVLKRCRALG----LEPTFLGIDKKS------NRNFARAGKKISEYGTQLREKQ 50 Query: 60 KVRRIYGVLERQFRNYYKEAARLK-GNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 K + IYGVLE+ FRN + +A +LK G TGENLL LLE RLDNV++RMG+G TR EARQ+V Sbjct: 51 KAKFIYGVLEKPFRNNFDKAKKLKYGTTGENLLILLELRLDNVMFRMGYGRTRTEARQIV 110 Query: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 HK ++VNG+ VNI SYQV DV+SI+EK K R K LE+ + R P WLE D + Sbjct: 111 DHKHVLVNGKCVNIPSYQVKAGDVISIKEKCKSAQRYKDILEVTDGRTVPAWLEADHENL 170 Query: 179 EGTFKRKPERSDLSADINEHLIVELYSK 206 GT K P R + +NE LIVELYSK Sbjct: 171 TGTVKEIPTRDQIDVPVNEVLIVELYSK 198 >UniRef50_A5KQD5 Putative uncharacterized protein n=3 Tax=Ruminococcus RepID=A5KQD5_9FIRM Length = 181 Score = 172 bits (437), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 83/160 (51%), Positives = 110/160 (68%) Query: 47 RLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMG 106 ++S+YG+QLREKQK + IYGVLE+ FRNYY +A +++G TGENL+ +LE RLDNV++RMG Sbjct: 22 KMSEYGLQLREKQKAKFIYGVLEKPFRNYYAKAKQMEGMTGENLMRILESRLDNVIFRMG 81 Query: 107 FGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQRE 166 TR EARQ+V HK ++VNG+ VNI SY V D + I+E K R K LE Sbjct: 82 LARTRKEARQIVDHKHVLVNGKQVNIPSYLVKAGDTIEIKENKKGSQRYKDILEATGSNM 141 Query: 167 KPTWLEVDAGKMEGTFKRKPERSDLSADINEHLIVELYSK 206 P WL+VDA ++G+ K P R + ++E LIVELYSK Sbjct: 142 VPEWLDVDAENLKGSVKELPAREAIDVPVDEMLIVELYSK 181 >UniRef50_C6PD21 RNA-binding S4 domain protein n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PD21_CLOTS Length = 198 Score = 172 bits (436), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 97/208 (46%), Positives = 132/208 (63%), Gaps = 14/208 (6%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKC---KIEQAPGQHG-ARKPRLSDYGVQLR 56 MAR + PK ++ R G L KC K APGQHG AR +LS+YG +L Sbjct: 1 MARTIVPKHRMCRIVGHPL-------CGSPKCPSLKRPYAPGQHGLARGKKLSEYGRRLL 53 Query: 57 EKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQ 116 EKQK++ IY V ERQ+R Y+++A + K T E LL+LLE RLDN+VYRMGF T ARQ Sbjct: 54 EKQKLKSIYNVKERQYRRYFEKALKSKEPTSEKLLSLLERRLDNIVYRMGFAPTIYSARQ 113 Query: 117 LVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAG 176 LVSH I+VNG+ VNI SY+V+ DVVS++EK+K +K ++ + P ++ VD Sbjct: 114 LVSHGHILVNGKKVNIPSYEVNVGDVVSVKEKSKNMPLIKQSI---GTNDIPPYINVDVD 170 Query: 177 KMEGTFKRKPERSDLSADINEHLIVELY 204 KMEG + P RS++ +I++HL+VE Y Sbjct: 171 KMEGKLIKLPRRSEIPVEIDDHLLVEFY 198 >UniRef50_Q2SSN9 30S ribosomal protein S4 n=25 Tax=Mycoplasmataceae RepID=RS4_MYCCT Length = 208 Score = 171 bits (432), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 94/208 (45%), Positives = 140/208 (67%), Gaps = 6/208 (2%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR--KPRLSDYGVQLREK 58 M+R++G K SRR G + L++G K +I PGQHG K ++S+YG QL+EK Sbjct: 1 MSRFIGSTFKKSRRFGFSI-LETGKEFSKGKKRI-TTPGQHGKERAKVKVSEYGQQLQEK 58 Query: 59 QKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 QKV+ +YG+ ERQFRN + +A +++G G N L LLE RLDN+VYR+GF ATR ARQLV Sbjct: 59 QKVKFMYGLSERQFRNTFAKAKKMQGILGTNFLVLLESRLDNIVYRLGFSATRQGARQLV 118 Query: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 +H I+VNG+ V+I SY +S D+V ++ KK +V AL+ E +++V+ ++ Sbjct: 119 NHGHILVNGKKVDIPSYLLSVGDLVEVKASMKKNEKVLEALQNNEA--TLEFVKVNKNEV 176 Query: 179 EGTFKRKPERSDLSADINEHLIVELYSK 206 +G F R PER++L+++I+E LIVE Y++ Sbjct: 177 KGEFVRLPERNELNSEISESLIVEWYNR 204 >UniRef50_D0JAU4 30S ribosomal protein S4 n=1 Tax=Blattabacterium sp. (Blattella germanica) str. Bge RepID=D0JAU4_BLASB Length = 208 Score = 166 bits (421), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 93/211 (44%), Positives = 133/211 (63%), Gaps = 14/211 (6%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGA--RKPRLSDYGVQLREK 58 MA+Y+GPK K+SRR G ++ + + D + + GQHG R+ + S+Y +QL EK Sbjct: 7 MAKYIGPKTKISRRFGECIYGED--KYFDRR---KYPSGQHGNNRRRGKRSEYFIQLIEK 61 Query: 59 QKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 QK + YG+LERQF + EAAR KG TGE LL E RLDN+V+R+ F +R+ ARQ+V Sbjct: 62 QKAKYTYGILERQFEKLFFEAARKKGITGELLLQACESRLDNIVFRLKFAPSRSSARQIV 121 Query: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPT---WLEVDA 175 SH+ I VN R+VNI S+++ P D + +REK+KK + ++ Q++ T WL D Sbjct: 122 SHRHIFVNDRIVNIPSFRLKPGDKIGVREKSKKHPIILDSI----QKKTGTLVEWLIFDE 177 Query: 176 GKMEGTFKRKPERSDLSADINEHLIVELYSK 206 M G F+ P+R+ + +I E LIVELYSK Sbjct: 178 KNMVGIFRVMPKRTQIPENIKEQLIVELYSK 208 >UniRef50_B5Y961 Ribosomal protein S4 n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y961_COPPD Length = 210 Score = 163 bits (413), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 90/210 (42%), Positives = 124/210 (59%), Gaps = 7/210 (3%) Query: 3 RYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQ---APGQHGA--RKPRLSDYGVQLRE 57 +Y GP ++ RR G LFLK G + + KC +E+ PGQHG R R ++YG++L+E Sbjct: 2 KYTGPSCRICRRSGVKLFLK-GEKCLSPKCPMERRAFPPGQHGPTRRGKRDTEYGLRLKE 60 Query: 58 KQKVRRIYGVLERQFRNYYKEAARLKG-NTGENLLALLEGRLDNVVYRMGFGATRAEARQ 116 KQK+R Y + E Q R Y+ A KG TG LL LLE RLD VV RMGF ++ AR Sbjct: 61 KQKLRHSYMITETQLRRYFSTAMSQKGVATGTALLQLLERRLDAVVQRMGFASSIKMARN 120 Query: 117 LVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAG 176 V H +MVNG+ V+I SY V P D +++ + K V+ ++ + E R WL VD Sbjct: 121 WVRHGHVMVNGKRVDIPSYLVKPGDRITLDKDLKDNPDVQKSIAMNEGRPNLEWLNVDVE 180 Query: 177 KMEGTFKRKPERSDLSADINEHLIVELYSK 206 +EGT+ R P R ++ +NE LIVE YS+ Sbjct: 181 NLEGTYLRVPSREEIPVAVNEQLIVEYYSR 210 >UniRef50_A9MAK7 30S ribosomal protein S4 n=56 Tax=Alphaproteobacteria RepID=RS4_BRUC2 Length = 205 Score = 162 bits (411), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 97/210 (46%), Positives = 135/210 (64%), Gaps = 9/210 (4%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR-KPRLSDYGVQLREKQ 59 M++ K K+ RR G +++ R + E PGQHG R K +LSD+GVQLR KQ Sbjct: 1 MSKRESAKYKIDRRLGENIW----GRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQ 56 Query: 60 KVRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 K++ YG + E+QFR Y+EAAR KG+TGENL+ LLE RLD VVYR F T ARQ + Sbjct: 57 KLKGFYGDISEKQFRKTYEEAARRKGDTGENLIGLLESRLDAVVYRAKFVPTIFAARQFI 116 Query: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 +H + VNGR VNI SY++ DVV +REK+K+ + V A++LAE R+ P +++VD KM Sbjct: 117 NHGHVNVNGRRVNIQSYRLKVGDVVEVREKSKQLAIVLEAVQLAE-RDVPDYIDVDHNKM 175 Query: 179 EGTFKRKPERSDL--SADINEHLIVELYSK 206 T+ R P SD+ + + +L+VE YS+ Sbjct: 176 VATYNRVPGLSDVPYAVQMEPNLVVEFYSR 205 >UniRef50_C9KPD3 Ribosomal protein S4 n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KPD3_9FIRM Length = 197 Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 79/160 (49%), Positives = 106/160 (66%) Query: 47 RLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMG 106 ++S+YG QL+EKQK + IYGVLE+QFR YY +A +++G TGENLL LLE RLDNVVYR+G Sbjct: 38 KVSEYGTQLKEKQKAKFIYGVLEKQFRGYYDKAKKMQGVTGENLLGLLERRLDNVVYRLG 97 Query: 107 FGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQRE 166 TR +ARQLV H VNG+ V+I S V+ DV+++ EK++ + K E + Sbjct: 98 LANTRRQARQLVRHGHFTVNGKRVDIPSALVNAGDVIAVAEKSQSNAFFKELKESSNALS 157 Query: 167 KPTWLEVDAGKMEGTFKRKPERSDLSADINEHLIVELYSK 206 P WL+ D + GT R P R ++ +NE IVELYSK Sbjct: 158 APAWLQADQANLTGTVTRFPNRDEIDVPVNEQAIVELYSK 197 >UniRef50_C9M7W9 Ribosomal protein S4 n=2 Tax=Synergistaceae RepID=C9M7W9_9BACT Length = 206 Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 93/206 (45%), Positives = 122/206 (59%), Gaps = 6/206 (2%) Query: 2 ARYLGPKLKLSRREGTDLFLKSGVRAID-TKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 R PK K+ RR G ++F G + D + PG R + S YG+QL+EKQK Sbjct: 6 TRKTAPKGKIVRRLGANIF---GNQKYDKLLSRKATPPGGQPRRHGKQSIYGLQLQEKQK 62 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 +R YGV ERQ Y A +++G TG N+L LLE RLDNVVYR+GF TR +ARQLV H Sbjct: 63 IRFSYGVSERQLHKVYTLAKKMEGVTGSNMLILLESRLDNVVYRLGFCTTRPQARQLVCH 122 Query: 121 KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEG 180 VNGR V+I S +VS DV+SIRE +K +K LE+A +P WL + EG Sbjct: 123 GHFAVNGRKVDIPSARVSAGDVISIRENSKDMKVLKENLEVASAVSQPAWLSLSG--TEG 180 Query: 181 TFKRKPERSDLSADINEHLIVELYSK 206 T R PERS++ +E ++VE Y+K Sbjct: 181 TVLRLPERSEIVCLADEQVVVEYYAK 206 >UniRef50_B7J2H5 30S ribosomal protein S4 n=21 Tax=Borrelia RepID=RS4_BORBZ Length = 208 Score = 160 bits (404), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 91/208 (43%), Positives = 126/208 (60%), Gaps = 4/208 (1%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQ 59 M R K KL RR G ++F + I K PG HG ARK ++++YG QL EKQ Sbjct: 1 MNRKQIAKGKLVRRFGINIFEQPKYDKILKKK--PHPPGMHGKARKAKITEYGKQLIEKQ 58 Query: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119 K++ YGV ERQ N +KEA + G TG+NLL++LE R+DNVVYR GF +RA ARQ+VS Sbjct: 59 KIKFTYGVSERQLTNTFKEAKKHHGVTGDNLLSILERRIDNVVYRAGFAISRAHARQIVS 118 Query: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALE-LAEQREKPTWLEVDAGKM 178 H I++NGR V I S + ND + I+EK + +++ +E + R PTW+EV+A + Sbjct: 119 HGIIILNGRRVTIPSIILRANDQIQIKEKDSLKKLIRSNIEKTSSLRNLPTWIEVNADDL 178 Query: 179 EGTFKRKPERSDLSADINEHLIVELYSK 206 K P R ++ NE ++VE YSK Sbjct: 179 NIKVKHAPSRDEIPTLANEQMVVEYYSK 206 >UniRef50_UPI00016C3E34 30S ribosomal protein S4 n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3E34 Length = 196 Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 89/205 (43%), Positives = 120/205 (58%), Gaps = 28/205 (13%) Query: 19 LFLKSGVRAIDTKCKIEQ---APGQHGARKPRLSDYGVQLREKQKVRRIYGVLERQFRNY 75 L+LK G R KC I++ PG HG R+ + S+YG++LREKQK++R YGVLE QFR Y Sbjct: 3 LYLK-GDRCFGPKCPIDKQKPPPGMHGLRRSKTSEYGIRLREKQKLKRFYGVLEAQFRRY 61 Query: 76 YKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASY 135 Y A + GNTGE LL++LE RLDNVV+R+GF R ARQ+VSH I+VNG +IAS Sbjct: 62 YGLATKAVGNTGEQLLSILERRLDNVVHRLGFAVNRTSARQMVSHGHILVNGVKCDIASM 121 Query: 136 QVSPNDVVSIREK-----------AKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFKR 184 V P DV+ ++ + AK R+ LEL +++P EG R Sbjct: 122 LVKPGDVIKVKTRDSSLKMARDTLAKGTVRIPDFLELTGTQDQP----------EGRMNR 171 Query: 185 KPERSDLS---ADINEHLIVELYSK 206 P R D+ DI E LI+E+ ++ Sbjct: 172 TPTRQDVDERITDIREQLIIEIATR 196 >UniRef50_A4WUP0 30S ribosomal protein S4 n=66 Tax=Bacteria RepID=RS4_RHOS5 Length = 206 Score = 155 bits (391), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 95/212 (44%), Positives = 129/212 (60%), Gaps = 13/212 (6%) Query: 1 MARYLGPKLKLSRREGTDLF--LKSGVRAIDTKCKIEQAPGQHGAR-KPRLSDYGVQLRE 57 M + K K+ RR G +++ KS V K E PGQHG R K +LSD+G QLR Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSPVN------KREYGPGQHGQRRKNKLSDFGTQLRA 54 Query: 58 KQKVRRIYGVL-ERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQ 116 KQK++ YG L E+QFR Y EA R+KG+TGE L+ LLE RLD +VYR F T ARQ Sbjct: 55 KQKLKGYYGDLTEKQFRKIYAEAERVKGDTGEMLVGLLERRLDAIVYRAKFVPTVFAARQ 114 Query: 117 LVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAG 176 V+H + VNG+ VNI SY+ DV+ +RE++++ + V A +LAE R+ P ++EVD Sbjct: 115 FVNHGHVTVNGQRVNIGSYRCKEGDVIQVRERSRQLAIVLEATQLAE-RDVPDYIEVDYS 173 Query: 177 KMEGTFKRKPERSDLSADI--NEHLIVELYSK 206 KM TF R P D+ + +L+VE Y+K Sbjct: 174 KMTATFVRTPSLGDVPYPVVMEPNLVVEFYAK 205 >UniRef50_A5GRL5 30S ribosomal protein S4 n=52 Tax=cellular organisms RepID=RS4_SYNR3 Length = 202 Score = 154 bits (390), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 91/208 (43%), Positives = 124/208 (59%), Gaps = 10/208 (4%) Query: 1 MARYLGPKLKLSRREG--TDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREK 58 M+RY G +L+++RR G L K+ R+ PGQHG + + S+Y ++L EK Sbjct: 1 MSRYRGARLRVTRRLGDLPGLTRKAAKRSY--------PPGQHGQARRKRSEYAIRLEEK 52 Query: 59 QKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 QK+R YGV ERQ Y K+A G+TG NLL LLE RLDNV +R+GFG T +RQLV Sbjct: 53 QKLRFNYGVSERQLVRYVKKARAQGGSTGTNLLKLLENRLDNVCFRLGFGPTIPGSRQLV 112 Query: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 +H + VNGRVV+IASYQ DV++IREK + + LE P LE++ K+ Sbjct: 113 NHGHVTVNGRVVDIASYQCKAGDVIAIREKKPSKKLAETNLEFPGLANIPPHLELEKSKL 172 Query: 179 EGTFKRKPERSDLSADINEHLIVELYSK 206 K ER ++ +INE L+VE YS+ Sbjct: 173 TAKVVGKCEREWVALEINELLVVEYYSR 200 >UniRef50_Q3M534 30S ribosomal protein S4 n=946 Tax=cellular organisms RepID=RS4_ANAVT Length = 202 Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 89/208 (42%), Positives = 124/208 (59%), Gaps = 10/208 (4%) Query: 1 MARYLGPKLKLSRREG--TDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREK 58 M+RY GP+L++ RR G L KS RA PGQHG + + S+Y ++L EK Sbjct: 1 MSRYRGPRLRIVRRLGDLPGLTRKSARRAY--------PPGQHGQNRKKRSEYAIRLEEK 52 Query: 59 QKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 QK+R YG+ E+Q Y + A R+ G+TG+ LL LLE RLDN V+R+G T ARQLV Sbjct: 53 QKLRLNYGLTEKQLLRYVRRARRVTGSTGQVLLQLLEMRLDNTVFRLGMAPTIPAARQLV 112 Query: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 +H + VNGRVVNIASYQ P + +++R+KA + V+ L+ P+ LE D K+ Sbjct: 113 NHGHVTVNGRVVNIASYQCRPGEEIAVRDKAPSRKLVENNLQYPGLANLPSHLEFDKNKL 172 Query: 179 EGTFKRKPERSDLSADINEHLIVELYSK 206 G ER ++ +NE L+VE YS+ Sbjct: 173 VGKVNGVIEREWVALQVNELLVVEYYSR 200 >UniRef50_Q2JUD6 30S ribosomal protein S4 n=92 Tax=cellular organisms RepID=RS4_SYNJA Length = 203 Score = 151 bits (381), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 92/207 (44%), Positives = 119/207 (57%), Gaps = 7/207 (3%) Query: 1 MARYLGPKLKLSRR-EGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQ 59 M+RY GP+LK+ RR G DL + R +T PG HGA + + S+Y ++L EKQ Sbjct: 1 MSRYTGPRLKIIRRFGGLDLPGLTRKRPKNT-----NPPGMHGAERKKKSEYAIRLEEKQ 55 Query: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119 KVR YGV ERQ Y ++A R KG+TG LL +LE RLD +V+R+G T ARQLVS Sbjct: 56 KVRLNYGVSERQMLRYMRKARRSKGSTGLALLQMLEMRLDCIVFRLGMAPTIPAARQLVS 115 Query: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179 H I VNGR V I SY DV+++R K + V A E P +LE D K+ Sbjct: 116 HGHIEVNGRKVTIPSYGCKVGDVITVRNKESSRKLVAAYAEYPGL-FLPDYLEFDKEKLR 174 Query: 180 GTFKRKPERSDLSADINEHLIVELYSK 206 G K P R + A +NE L+VE YS+ Sbjct: 175 GRIKELPPREQICAPVNELLVVEFYSR 201 >UniRef50_D1J7L7 30S ribosomal protein S4 n=2 Tax=Mycoplasma RepID=D1J7L7_MYCHP Length = 199 Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 85/206 (41%), Positives = 123/206 (59%), Gaps = 7/206 (3%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 M++++G K SRR G L + + K APGQHGA++ + SDY + + EKQK Sbjct: 1 MSKFVGSMFKKSRRYGISLLENN--KEFTKGKKRTTAPGQHGAKRSKPSDYQLHMYEKQK 58 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 VR +YG+ ERQF+N + + ++ G TG NLL +E RLDN+V+R GF TRA+ARQLV+H Sbjct: 59 VRYMYGLNERQFKNLFIKVSKKAGVTGINLLQTVESRLDNLVFRAGFARTRAQARQLVNH 118 Query: 121 KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEG 180 V+G NI S V V+ ++E + +K A+E+ WL + K+ Sbjct: 119 GHFTVDGCKANIPSMIVKVGSVIELKEALQNNVAIKDAIEVMTV---APWLTKENFKV-- 173 Query: 181 TFKRKPERSDLSADINEHLIVELYSK 206 TF R PER++ + DINE LIVE Y++ Sbjct: 174 TFTRLPERNEFAKDINESLIVEYYNR 199 >UniRef50_UPI00016B2693 ribosomal protein S4 n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B2693 Length = 205 Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 91/209 (43%), Positives = 121/209 (57%), Gaps = 7/209 (3%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQ 59 MAR P +K SRREG L K A + PG+H R+ + S Y QLREKQ Sbjct: 1 MARDTSPIVKQSRREGYALHPK----AHKIMVRKSGIPGEHAHGRQGKPSLYLTQLREKQ 56 Query: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119 KVRR YG+LE+QF KEA R KG GENLL LLE RLDN VYR GF ++R ARQLVS Sbjct: 57 KVRRTYGLLEKQFSRLMKEATRKKGLAGENLLQLLERRLDNAVYRAGFASSRRAARQLVS 116 Query: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKP--TWLEVDAGK 177 H ++NGR V+I S ++ D +S+R K+ K ++ + + +W++ D Sbjct: 117 HGHFILNGRRVDIPSIRLKAGDEISVRPKSTKSGYFTHIDDIVKNSNQTALSWMKSDVKG 176 Query: 178 MEGTFKRKPERSDLSADINEHLIVELYSK 206 ++ + P+R + DINE LIVE YS+ Sbjct: 177 LKFSITGNPKREEAEPDINEQLIVEYYSR 205 >UniRef50_A0T0H2 30S ribosomal protein S4, chloroplastic n=4 Tax=stramenopiles RepID=RR4_PHATR Length = 203 Score = 149 bits (377), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 86/208 (41%), Positives = 128/208 (61%), Gaps = 8/208 (3%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARK--PRLSDYGVQLREK 58 M+RY GPKLK+SRR GT L + K PG+ G +L++YGV+L EK Sbjct: 1 MSRYRGPKLKISRRLGTLPGLTT------KKSNKLNRPGKDGNTDIGKKLTEYGVRLEEK 54 Query: 59 QKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 QK++ YG+ E+Q Y KEA R +G TG LL LLE RLD + + +GF + A+ARQLV Sbjct: 55 QKLKFNYGLTEKQLFRYVKEARRRQGVTGLILLQLLEMRLDTLCFTLGFAKSLAQARQLV 114 Query: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 +H I +N +VV+I S+Q ND++SI+EK+ ++ V+ ++ + RE PT L D K+ Sbjct: 115 NHGHITINKKVVSIPSFQCRLNDIISIKEKSSSKTLVETNIKNNQVREIPTHLRFDTVKL 174 Query: 179 EGTFKRKPERSDLSADINEHLIVELYSK 206 E +R+D+S ++E L++E YS+ Sbjct: 175 EAIVLDYCDRNDVSLQLDELLVIEHYSR 202 >UniRef50_C7LKJ2 30S ribosomal subunit protein S4 n=1 Tax=Candidatus Sulcia muelleri SMDSEM RepID=C7LKJ2_SULMS Length = 223 Score = 149 bits (375), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 93/227 (40%), Positives = 126/227 (55%), Gaps = 25/227 (11%) Query: 1 MARYLGPKLKLSRRE--GTDLFLKSGVRAIDTKCKIEQAPGQHGARK------------- 45 MA+Y+GPK K++R+ G ++LK + K Q + Sbjct: 1 MAKYIGPKNKIARKFELGESIYLKEKNNFENKKTFDGQYVNPRSGKNRKIIKKLNKKLNK 60 Query: 46 ---PRLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVV 102 + S Y +QL EKQKV+ YG+LE+QFR +++A++ KG GE LL L E RLDN+V Sbjct: 61 KLNKKKSFYFIQLLEKQKVKYTYGILEKQFRKMFEKASKKKGRKGEILLQLCESRLDNIV 120 Query: 103 YRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELA 162 YR+ TR EARQLVSH+ I VNG++VNI SY + P D +S+ EK KKQ A+ L Sbjct: 121 YRLKLSHTRPEARQLVSHRHITVNGKIVNIPSYNLKPGDKISLIEKYKKQK----AILLE 176 Query: 163 EQR---EKPTWLEVDAGKMEGTFKRKPERSDLSADINEHLIVELYSK 206 ++R + TWL D G K P R + INE+LIVELY K Sbjct: 177 KKRLVGKVTTWLSWDNENFIGILKSIPRREQIPEMINENLIVELYYK 223 >UniRef50_B1X067 30S ribosomal protein S4 n=18 Tax=cellular organisms RepID=RS4_CYAA5 Length = 202 Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 88/208 (42%), Positives = 120/208 (57%), Gaps = 10/208 (4%) Query: 1 MARYLGPKLKLSRREG--TDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREK 58 M+RY GP+L++ RR G L K+ RA PGQHG + + S+Y ++L EK Sbjct: 1 MSRYRGPRLRVVRRLGELPGLSRKTPRRAY--------PPGQHGQGRRKRSEYAIRLEEK 52 Query: 59 QKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 QK+ YGV E+Q Y K+A R +TG+ LL LLE RLDN V+R+G T ARQLV Sbjct: 53 QKLLYNYGVTEKQLVRYMKKARRSTDSTGQKLLELLEMRLDNTVFRLGMAGTIPGARQLV 112 Query: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 +H ++VNGRVVNIASYQ P DV+S+R K + V+ ++ P LE D + Sbjct: 113 NHGHVIVNGRVVNIASYQCRPGDVISVRNKDNSRRMVETNMQYPGLANLPDHLEFDKNTL 172 Query: 179 EGTFKRKPERSDLSADINEHLIVELYSK 206 G +R ++ INE L+VE YS+ Sbjct: 173 TGKVNDVIKREWVALQINELLVVEYYSR 200 >UniRef50_B2S2Q4 30S ribosomal protein S4 n=4 Tax=Treponema RepID=RS4_TREPS Length = 204 Score = 145 bits (366), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 79/199 (39%), Positives = 121/199 (60%), Gaps = 5/199 (2%) Query: 10 KLSRREGTDLFLKSGVRAIDTKCKIEQAPG-QHGAR-KPRLSDYGVQLREKQKVRRIYGV 67 K+ RR G ++F + K PG +HG + + ++S YG QL+EKQK R YG+ Sbjct: 9 KIVRRLGINIF--GNPKYTRLLGKKPAPPGKEHGVKQRAKVSVYGEQLKEKQKFRFAYGM 66 Query: 68 LERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNG 127 ERQFRN + +A R+KG TG N+L+L+E RLDN V+RMGF +R +ARQ+VSH+ ++NG Sbjct: 67 SERQFRNLFAQAHRMKGVTGNNMLSLMERRLDNTVFRMGFAISRVQARQMVSHRYFLING 126 Query: 128 RVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFKRKPE 187 + NI S ++S +DV++ + + S ++ L L+ Q ++ +WL VD ++ T P Sbjct: 127 KTANIPSMRISAHDVITTKNRKGIHSIIRHNLTLS-QGQRGSWLNVDEEQLSATVSELPR 185 Query: 188 RSDLSADINEHLIVELYSK 206 D+ N IVE YS+ Sbjct: 186 AQDIHPVGNIQHIVEYYSR 204 >UniRef50_Q3KL69 30S ribosomal protein S4 n=17 Tax=Chlamydiales RepID=RS4_CHLTA Length = 209 Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 82/210 (39%), Positives = 120/210 (57%), Gaps = 9/210 (4%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 MARY GPK +++RR G ++F R + + PGQHG ++ + SDYG+QL EKQK Sbjct: 1 MARYCGPKNRIARRFGANIF----GRGRNPLLRKPNPPGQHGMQRKKKSDYGLQLEEKQK 56 Query: 61 VRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119 ++ YG +LE+Q YKE +GN + L E RLDN+VYR+GF T A+QLVS Sbjct: 57 LKACYGMILEKQLVKAYKEVVNKQGNVAQMFLEKFECRLDNIVYRLGFAKTIFAAQQLVS 116 Query: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179 H ++VNG+ V+ S+ V P +S++EK+K+ + V +LE +Q P +L +D + Sbjct: 117 HGHVLVNGKKVDRRSFFVRPGMQISLKEKSKRLAIVTESLENKDQSSLPAYLSLDKAAFK 176 Query: 180 GTFKRKPE----RSDLSADINEHLIVELYS 205 G PE S L +N +I E S Sbjct: 177 GELVVAPELDQIASQLPLPVNVSVICEFLS 206 >UniRef50_B7T1T6 Ribosomal protein S4 n=1 Tax=Vaucheria litorea RepID=B7T1T6_VAULI Length = 204 Score = 142 bits (358), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 78/209 (37%), Positives = 120/209 (57%), Gaps = 10/209 (4%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRL---SDYGVQLRE 57 MARYLGP+LK+ RR G + + +K ++ GQ + + +L SDY ++L E Sbjct: 1 MARYLGPRLKIIRRFG-------NLPGLTSKIITKKPSGQQASNQKKLQKSSDYKIRLFE 53 Query: 58 KQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQL 117 KQK+R YG+ ERQ R Y EA R KG+T L+ LLE RLD +++R+G T ARQ Sbjct: 54 KQKLRYNYGLTERQLRKYVSEARRKKGSTAFYLMQLLEMRLDTIIFRLGLAPTIPAARQF 113 Query: 118 VSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGK 177 V+H I++N + +NI S+Q P D+++I+ K + V+ +L P L ++ Sbjct: 114 VNHGHILINKKKINIPSFQCHPTDIITIKNKKGTKQLVEKSLANPRFSTLPNHLTLNTKL 173 Query: 178 MEGTFKRKPERSDLSADINEHLIVELYSK 206 ++ K R DLS ++N+ LIVE Y++ Sbjct: 174 LQAEVKDIVIRKDLSFEVNDLLIVEYYAR 202 >UniRef50_D1R5K6 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R5K6_9CHLA Length = 229 Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 82/187 (43%), Positives = 116/187 (62%), Gaps = 6/187 (3%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 MARY G K +++RR G ++F R + PG HGAR+ + SDYGVQL EKQK Sbjct: 24 MARYTGKKNRIARRFGANVF----GRLRNPLLHKPNPPGMHGARRRKKSDYGVQLEEKQK 79 Query: 61 VRRIYGVL-ERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119 ++ IYG+L E Q NYYK+AARL+ NT + L +LE RLD VV+R+ FG+T A+QLVS Sbjct: 80 LKAIYGMLSEGQLINYYKKAARLEANTAQVLAQMLECRLDIVVHRLKFGSTIFAAQQLVS 139 Query: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179 H I+V+G+ V+ S+QV P V+S+REK++ ++ A + + R P +L +D Sbjct: 140 HGHILVDGKKVDRRSFQVRPGMVISVREKSRGIKAIQEAQD-SSMRSVPEYLSIDKENFS 198 Query: 180 GTFKRKP 186 G P Sbjct: 199 GQLLEYP 205 >UniRef50_C1TPK7 SSU ribosomal protein S4P n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TPK7_9BACT Length = 205 Score = 139 bits (349), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 81/204 (39%), Positives = 114/204 (55%), Gaps = 5/204 (2%) Query: 3 RYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVR 62 R PK K+ RR G ++F G D + + R + S YG QL EKQK+R Sbjct: 7 RKTAPKGKMVRRFGVNVF---GNTKYDRLLAKKSGANKKNRRPAKQSIYGQQLLEKQKIR 63 Query: 63 RIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKA 122 YGV E+Q R Y +A G G N+L LLE RLDNVVYR+G +TR +ARQLV H Sbjct: 64 FAYGVSEKQLRAAYAKAKNQGGVAGHNMLILLESRLDNVVYRLGLCSTRPQARQLVRHGH 123 Query: 123 IMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTF 182 +N R V+I S V P DV+++ EK+++ ++ E+A KP WL ++ M G Sbjct: 124 FTLNDRKVDIPSALVKPGDVIAVAEKSREMKVLRENSEVASAVSKPGWLSLNG--MSGKV 181 Query: 183 KRKPERSDLSADINEHLIVELYSK 206 +R PER ++ +E ++VE YS+ Sbjct: 182 ERLPERQEIPTIADEQIVVEYYSR 205 >UniRef50_B8HXV1 30S ribosomal protein S4 n=431 Tax=cellular organisms RepID=RS4_CYAP4 Length = 204 Score = 139 bits (349), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 85/206 (41%), Positives = 119/206 (57%), Gaps = 4/206 (1%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 MARY GP+L++ RR G DL G+ + PGQHG + + S+Y ++L EKQK Sbjct: 1 MARYRGPRLRVIRRLG-DL---PGLTRKAVPSRRAYPPGQHGQARKKRSEYAMRLEEKQK 56 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 +R YG+ ERQ Y + A R+ G+TG LL LLE RLDN+++R+G T ARQLV+H Sbjct: 57 LRFNYGLTERQLVRYVRRARRVSGSTGLALLQLLEMRLDNIIFRLGMAPTIPAARQLVNH 116 Query: 121 KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEG 180 + VNGRVV+I SYQ P + + IR K + + L+ PT LE+D K+ Sbjct: 117 GHVTVNGRVVSIPSYQCRPGNEIGIRNKENSRRLAEENLKFPGLANLPTHLELDKNKLMA 176 Query: 181 TFKRKPERSDLSADINEHLIVELYSK 206 ER ++ +NE L+VE YS+ Sbjct: 177 KVNSVVEREWVALQVNELLVVEYYSR 202 >UniRef50_C3PN57 30S ribosomal protein S4 n=41 Tax=cellular organisms RepID=RS4_RICAE Length = 205 Score = 136 bits (343), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 82/210 (39%), Positives = 120/210 (57%), Gaps = 9/210 (4%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKP-RLSDYGVQLREKQ 59 M + + K K SRR G L+ S A +T+ PGQHG + SDYG+ L+ KQ Sbjct: 1 MTKIVRSKYKASRRLGVSLWGDSK-DAFNTR---NYRPGQHGQNTMIKTSDYGLHLKAKQ 56 Query: 60 KVRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 +++ YG V E+QFRN + A ++KGNTGEN + LLE RLD VVYRM T ARQLV Sbjct: 57 RLKCHYGRVTEKQFRNIFALAQKMKGNTGENFIGLLESRLDTVVYRMNIAPTIFAARQLV 116 Query: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 SH I +NG+ +IAS ++ DV+ ++E K+ ++ ++ + + P +L D + Sbjct: 117 SHGHIKLNGKKADIASIRLKAGDVIEVKESVKQIPLIQESVS-KQGQTTPGYLSFDVPSL 175 Query: 179 EGTFKRKPERSDLSADINE--HLIVELYSK 206 G + R P SD+ HL++ELYS+ Sbjct: 176 TGKYLRVPALSDVPYPFEAEVHLVIELYSR 205 >UniRef50_D2BEX9 30S ribosomal protein S4 n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2BEX9_STRRD Length = 204 Score = 135 bits (341), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 83/208 (39%), Positives = 118/208 (56%), Gaps = 9/208 (4%) Query: 3 RYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPR--LSDYGVQLREKQK 60 RY GPK++LSRR G L K+ VR + + PG+HG + R DYG++L EKQK Sbjct: 2 RYTGPKVRLSRRAGVPLTRKA-VRYFEER---PYPPGEHGRKTNRRQTGDYGLRLMEKQK 57 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 +R Y V ERQ R Y+ A R G +G L+ LLE RL ++V R G + ARQ V+H Sbjct: 58 LRWYYDVSERQMRRYWDMALRSTGRSGAELVVLLESRLASLVLRAGLAPSIYAARQYVTH 117 Query: 121 KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALE--LAEQREKPTWLEVDAGKM 178 I V+GR V+I SY V P V+++R++++ AA E A+ R P +L VD + Sbjct: 118 GHITVDGRKVDIPSYLVKPGQVIAVRQRSRAMQPFVAAAEGTYADDRIAP-YLSVDHADL 176 Query: 179 EGTFKRKPERSDLSADINEHLIVELYSK 206 T +P R + ++E L+VE YS+ Sbjct: 177 RFTVVGRPAREQIVVPVDEQLVVEFYSR 204 >UniRef50_C9RJV5 Ribosomal protein S4 n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RJV5_FIBSS Length = 201 Score = 135 bits (341), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 86/207 (41%), Positives = 120/207 (57%), Gaps = 7/207 (3%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQ 59 M+ + GPK K++R G + K+ +A+D + APGQHG RK S Y QL EKQ Sbjct: 1 MSSFRGPKGKVARSLGVAVSQKTQ-KALDRR---NFAPGQHGQTRKKSASVYKQQLVEKQ 56 Query: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119 ++R Y + E Q YKEA R +G+ G+NL+ LLE RLD VVYRMGF T ARQ V+ Sbjct: 57 RLRFTYNISEAQLAKAYKEANRREGSAGDNLMILLETRLDAVVYRMGFARTIFAARQYVA 116 Query: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179 H VNG S + DV+++RE++K+ ++K A +A P +L VD GKM+ Sbjct: 117 HGHFTVNGVRSFSPSRLIKAGDVIAVREQSKEHVQIKEA--IASAAAAPEYLSVDLGKMQ 174 Query: 180 GTFKRKPERSDLSADINEHLIVELYSK 206 GT + P R + + E L+VE YS+ Sbjct: 175 GTLVKLPLRDQIPVKLEEQLVVEYYSR 201 >UniRef50_P58134 Plastid 30S ribosomal protein S4 n=1 Tax=Euglena longa RepID=RR4_ASTLO Length = 206 Score = 135 bits (340), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 77/211 (36%), Positives = 125/211 (59%), Gaps = 12/211 (5%) Query: 1 MARYLGPKLKLSRREGT-DLFLKSGVR---AIDTKCKIEQAPGQHGARKPRLSDYGVQLR 56 M RYLGP +K+ R+ G+ F K ++ +DTK + + + S Y ++L+ Sbjct: 1 MVRYLGPHVKVIRKLGSLRAFTKKKIKRYFKLDTK-------KRKLSFNKKTSKYKIRLK 53 Query: 57 EKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQ 116 EKQK+R + + E+Q NY K+A +LKG++GENLL LE RLDN+VYR+G T +RQ Sbjct: 54 EKQKLRFNFAISEKQLFNYVKKAIKLKGSSGENLLVALEMRLDNIVYRLGLAPTIISSRQ 113 Query: 117 LVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREK-PTWLEVDA 175 L++H I V+G+VVNI S++ P + + I++ + ++ +EL ++ + P+ L + Sbjct: 114 LINHGHIYVDGKVVNIPSFKCKPTNNIKIKDNLVSKRIIEKNIELLDKYFRAPSHLYFNK 173 Query: 176 GKMEGTFKRKPERSDLSADINEHLIVELYSK 206 K+E +R D+ INE LI+E YS+ Sbjct: 174 KKLEAKVINMVKREDIKLIINELLIIEFYSR 204 >UniRef50_Q1CXF1 30S ribosomal protein S4 B n=2 Tax=Cystobacterineae RepID=RS4B_MYXXD Length = 210 Score = 134 bits (336), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 82/212 (38%), Positives = 123/212 (58%), Gaps = 10/212 (4%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTK----CKIEQAPGQHGAR-KPRLSDYGVQL 55 MAR LGP+ K+ RR G L S + A D + PGQHGA + +SD+ +L Sbjct: 1 MARDLGPRGKMCRRLGIPL---SRITAKDPDKDPVLRRPYPPGQHGATARTSVSDFARRL 57 Query: 56 REKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEAR 115 REKQK++ YG++E+Q R ++EA+R GNTG LL LLE RLD++V R G + +AR Sbjct: 58 REKQKLKLYYGLMEKQCRAVFQEASRAPGNTGTVLLQLLESRLDSLVLRAGLATSIRQAR 117 Query: 116 QLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDA 175 Q V H + V+G+ +I S++V P V +K + V+ + + R P +++V Sbjct: 118 QFVRHGYLHVDGKRADIPSFRVKPGSEVRFHAAHQKLAVVQESFSRMKSRSVPAYVQV-L 176 Query: 176 GKMEGT-FKRKPERSDLSADINEHLIVELYSK 206 G+ EG + R PER ++ D+NE IVE Y++ Sbjct: 177 GEGEGLRYVRLPEREEIPVDVNEPFIVEYYAQ 208 >UniRef50_P56799 30S ribosomal protein S4, chloroplastic n=803 Tax=Eukaryota RepID=RR4_ARATH Length = 201 Score = 133 bits (334), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 121/206 (58%), Gaps = 7/206 (3%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 M+RY GP+ K RR G + + +K + ++ +R + S Y ++L EKQK Sbjct: 1 MSRYRGPRFKKIRRLG-------ALPGLTSKRPKAGSDLRNQSRSVKKSQYRIRLEEKQK 53 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 +R YG+ E Q Y + A + KG+TG+ LL LLE RLDN+++R+G T +ARQLV+H Sbjct: 54 LRFHYGLTEHQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMALTIPQARQLVNH 113 Query: 121 KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEG 180 I+VNGR+V+I SY+ P D+++++++ ++ V+ L+ + E P L + + EG Sbjct: 114 GHILVNGRIVDIPSYRCKPRDIITVKDEQNSRTLVQNLLDSSAPEELPNHLTLHTFQYEG 173 Query: 181 TFKRKPERSDLSADINEHLIVELYSK 206 + +R + INE L+VE YS+ Sbjct: 174 LVNQIIDRKCVGLKINELLVVEYYSR 199 >UniRef50_Q1H2K1 30S ribosomal protein S4 n=6 Tax=Proteobacteria RepID=RS4_METFK Length = 205 Score = 132 bits (332), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 81/209 (38%), Positives = 115/209 (55%), Gaps = 11/209 (5%) Query: 1 MARYLGPKLKLSRREGTDL--FLKSGVRAIDTKCKIEQAPGQHGARKPRL--SDYGVQLR 56 M+R+ GP+LK+ R G DL + + A T PGQHGA+ R SD+GV+L+ Sbjct: 1 MSRFTGPRLKVMRALGIDLPGLSRKTIEARPT------PPGQHGAKNTRRKKSDFGVKLQ 54 Query: 57 EKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQ 116 EKQK+R YG+ E+Q R +A + K TGE LL LLE RLDNVV+R GF T A ARQ Sbjct: 55 EKQKLRFNYGLSEKQLRRLMVDARKGKSPTGETLLQLLERRLDNVVFRAGFAPTIAAARQ 114 Query: 117 LVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAG 176 LV+H+ +M+NG+ VNI S +V D +S++ + K V L +P W+ Sbjct: 115 LVTHRHVMLNGKSVNIPSIRVRVGDEISLKASSTKLPIVVETLA-NPPLTRPEWISWAEQ 173 Query: 177 KMEGTFKRKPERSDLSADINEHLIVELYS 205 + P D+ ++ +VE Y+ Sbjct: 174 SQQAKVAHLPAAEDVPFPVDVQQVVEYYA 202 >UniRef50_Q7UXM6 30S ribosomal protein S4 n=6 Tax=Planctomycetaceae RepID=RS4_RHOBA Length = 202 Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 77/207 (37%), Positives = 115/207 (55%), Gaps = 6/207 (2%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGV-RAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQ 59 MARY GPK +++RR GT L+ +G RA+D + Q PG H R R S+YG L EKQ Sbjct: 1 MARYTGPKARINRRLGTMLYETAGAARAMDRR---PQPPGMH-TRGRRPSNYGAALMEKQ 56 Query: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119 K++ YG+ ERQ R Y++ R GNTGE LL + E RLDNVV R+GF TR +ARQ ++ Sbjct: 57 KIKHYYGLGERQLRRYFENVGRKSGNTGELLLLMCERRLDNVVRRVGFTKTRPQARQGIT 116 Query: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179 H VNG V Y + D++ +R + ++ + + + + W+ D+ + Sbjct: 117 HGHFRVNGVKVTKPGYMLRAGDLIEVRGRENLKNLYRGVIANSPP-DGLDWVSFDSETLR 175 Query: 180 GTFKRKPERSDLSADINEHLIVELYSK 206 T P D+S ++ + +VE S+ Sbjct: 176 ATVLSLPGAVDISLPVDANSVVEFLSR 202 >UniRef50_Q5C773 SJCHGC09636 protein (Fragment) n=1 Tax=Schistosoma japonicum RepID=Q5C773_SCHJA Length = 139 Score = 130 bits (327), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 72/144 (50%), Positives = 93/144 (64%), Gaps = 5/144 (3%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 MARY GP K SRR TDL G + + + PGQHG + + +Y QL+EKQK Sbjct: 1 MARYTGPITKKSRRLKTDLV--GGDKNFEMRPF---PPGQHGRGRVQEKEYLTQLQEKQK 55 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 R YGV+E+QF YYKEAAR +G TGENLL +LE RLD+VVYR G TR ARQ+V+H Sbjct: 56 ARFTYGVMEKQFVRYYKEAARRQGKTGENLLVILESRLDSVVYRAGLARTRRGARQMVTH 115 Query: 121 KAIMVNGRVVNIASYQVSPNDVVS 144 VNG+ V++ SY+V D+++ Sbjct: 116 GHFEVNGKRVDVPSYRVEQYDIIT 139 >UniRef50_Q0ZJ18 30S ribosomal protein S4, chloroplastic n=973 Tax=Embryophyta RepID=RR4_VITVI Length = 201 Score = 129 bits (323), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 119/206 (57%), Gaps = 7/206 (3%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 M+RY GP+ K RR G + + +K + ++ +R + S Y ++L EKQK Sbjct: 1 MSRYRGPRFKKIRRLG-------ALPGLTSKRPRAGSDLRNQSRSGKRSQYRIRLEEKQK 53 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 +R YG+ ERQ NY + A + KG TG LL LLE RLDN+++R+G +T ARQLV+H Sbjct: 54 LRFHYGLTERQLLNYVRIAGKAKGATGRVLLQLLEMRLDNILFRLGMASTIPGARQLVNH 113 Query: 121 KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEG 180 + I+VNGR+V+I SY+ P D+++ + K ++ ++ + + E P L + + +G Sbjct: 114 RHILVNGRIVDIPSYRCKPRDIITAGNEQKSRALIQNVFDSSSHEELPKHLTLHPFQFKG 173 Query: 181 TFKRKPERSDLSADINEHLIVELYSK 206 + + + + INE L+VE YS+ Sbjct: 174 LVNQIIDSNWVGLKINELLVVEYYSR 199 >UniRef50_Q47R66 30S ribosomal protein S4 n=2 Tax=Nocardiopsaceae RepID=RS4_THEFY Length = 203 Score = 128 bits (321), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 81/206 (39%), Positives = 114/206 (55%), Gaps = 6/206 (2%) Query: 3 RYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPR-LSDYGVQLREKQKV 61 RY GPK++LSRR G L K A+ K PG+HG R R SDY V+ EKQK+ Sbjct: 2 RYTGPKVRLSRRAGVPLTRK----AVKYFEKRPYPPGEHGRRVRRSTSDYAVRQAEKQKL 57 Query: 62 RRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHK 121 R Y + E+Q Y+ A + G TGE ++A LE RL V+ R GF A+ ARQ ++H Sbjct: 58 RWYYDLSEKQLARVYENAKKRPGRTGEEMIAELELRLATVLLRAGFAASIYAARQFINHG 117 Query: 122 AIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREK-PTWLEVDAGKMEG 180 I V+G+ V+I SYQV P +VS+REK++K A E EK ++L V + Sbjct: 118 HITVDGKKVDIPSYQVKPGQIVSVREKSRKLVPFIEAAEGVHADEKIASYLAVSHKDLTI 177 Query: 181 TFKRKPERSDLSADINEHLIVELYSK 206 +P+R + +E L+VE Y++ Sbjct: 178 AVVDRPKREQVPVPFDEQLVVEYYAR 203 >UniRef50_A6TSI5 30S ribosomal protein S4 B n=42 Tax=Clostridiales RepID=RS4B_ALKMQ Length = 199 Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 78/206 (37%), Positives = 113/206 (54%), Gaps = 9/206 (4%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 MAR P+ K RR G+ +++A K +LS YG+QL EKQ+ Sbjct: 1 MARMRQPRFKTCRR--------LGINVCGHPKAMKRADNGQVRDKRKLSSYGIQLLEKQR 52 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 +R Y V+E+QF+ Y K A + TG +L+ LE RLDN+VYR GFG++ +ARQ+V H Sbjct: 53 LRAYYEVMEKQFKIYVKAAIKDSETTGNSLIKKLECRLDNLVYRTGFGSSIRQARQMVVH 112 Query: 121 KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEG 180 I+VNG+ V+ S+ VS D +S+REK++K P + +AG G Sbjct: 113 GHILVNGKKVDRPSFAVSVGDDISLREKSRKNKIFIDNFLRNVDFSYPYIAKNEAG-FSG 171 Query: 181 TFKRKPERSDLSADINEHLIVELYSK 206 R PER + ++N+HL+VE YSK Sbjct: 172 QLIRMPERHEAPIEVNDHLVVEFYSK 197 >UniRef50_A5CCV1 30S ribosomal protein S4 n=58 Tax=Bacteria RepID=RS4_ORITB Length = 207 Score = 125 bits (315), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 88/213 (41%), Positives = 118/213 (55%), Gaps = 15/213 (7%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG--ARKPRLSDYGVQLREK 58 M + + K K+SRR GT ++ AI+ K PGQ G + + SDY L K Sbjct: 1 MTKVIKSKYKVSRRLGTSVWGHEK-DAINNK---NYKPGQQGNSSSISKPSDYSKHLIAK 56 Query: 59 QKVRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQL 117 Q+++ YG + E+QFRN +K A + GNT ENL+ LLE RLD VVYR+ T ARQL Sbjct: 57 QRLKSHYGRISEKQFRNTFKIARKKSGNTAENLVGLLERRLDAVVYRLNIAPTIFAARQL 116 Query: 118 VSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGK 177 VSHK I VNG+ +NIASY+V D + + E+AK+ V A+ + R P +L D K Sbjct: 117 VSHKHIKVNGKKINIASYRVKAGDSIELSEQAKQIPIVIGAIS-KKARRIPEYLAFDDEK 175 Query: 178 MEGTFKRKPERSDLSA-----DINEHLIVELYS 205 G F R P S +S D +L+VE YS Sbjct: 176 FIGNFIRMP--SSISEVPYPFDPQINLVVEFYS 206 >UniRef50_Q1ACM7 30S ribosomal protein S4, chloroplastic n=1359 Tax=Streptophytina RepID=RR4_CHAVU Length = 206 Score = 125 bits (315), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 76/207 (36%), Positives = 117/207 (56%), Gaps = 4/207 (1%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAI-DTKCKIEQAPGQHGARKPRLSDYGVQLREKQ 59 M+RY GP+LK+ RR G L + + +K + + + ++S Y ++L EKQ Sbjct: 1 MSRYRGPRLKIVRRLGP---LPGFTQKLYKSKSQYLGSSTTSSSSNKKISQYNIRLLEKQ 57 Query: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119 K+R YG+ ERQ Y A KG TG+ LL LLE RLDN+V+R+G T ARQLV+ Sbjct: 58 KLRFYYGLTERQLLKYVTIARNAKGPTGQVLLQLLEMRLDNIVFRLGMAPTIPAARQLVN 117 Query: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179 H+ I+VN VNI SY D +S++++ + ++ + A + + P+ L ++ K E Sbjct: 118 HRHILVNDFTVNIPSYSCKLGDKISVQKRFESKTNIFANSTQSASLKVPSHLTLNPAKNE 177 Query: 180 GTFKRKPERSDLSADINEHLIVELYSK 206 G + +R + A INE L+VE YS+ Sbjct: 178 GLVHQIVDREFIGAKINELLVVEYYSR 204 >UniRef50_A5CRZ7 30S ribosomal protein S4 n=75 Tax=Actinobacteria (class) RepID=RS4_CLAM3 Length = 209 Score = 122 bits (306), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 69/173 (39%), Positives = 111/173 (64%), Gaps = 4/173 (2%) Query: 37 APGQHG-ARKPRLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLE 95 APG+HG +++ + SDY V+LREKQ++R YG+ E Q + ++EA R +G TGENL+ +LE Sbjct: 35 APGEHGRSKRKQDSDYAVRLREKQRLRAQYGIREAQLKIAFQEARRTQGLTGENLVEILE 94 Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSI--REKAKKQS 153 RLD +V R G T A+ARQLV H+ IMV+G++V+ S++V ++ + R + + Sbjct: 95 QRLDALVVRSGLARTTAQARQLVVHRHIMVDGKIVDRPSFRVKAGQMIHVKPRSEGTEPF 154 Query: 154 RVKAALELAEQREK-PTWLEVDAGKMEGTFKRKPERSDLSADINEHLIVELYS 205 +V AA A+ K P++LEV+ K++ R P+R+++ L+VE Y+ Sbjct: 155 QVAAAGGHADVLPKLPSYLEVELDKLQARLVRLPKRAEVPVTCEVQLVVEYYA 207 >UniRef50_C1ABG6 30S ribosomal protein S4 n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ABG6_GEMAT Length = 205 Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 75/206 (36%), Positives = 112/206 (54%), Gaps = 8/206 (3%) Query: 5 LGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG---ARKPRLSDYGVQLREKQKV 61 +GP+LK+ RR G L G+ A D + + PGQHG AR+ ++S Y ++L KQ + Sbjct: 4 VGPRLKIIRRLGIQL---PGLTAKDAERR-PYPPGQHGQSTARRRKVSLYRLRLEAKQAL 59 Query: 62 RRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHK 121 R YG+ E Q R Y A G TG+ +LA+LE RLDNVV+R+GF T ARQLV H Sbjct: 60 RFYYGISENQLRRTYAMAKTRPGRTGDVMLAMLEARLDNVVFRLGFARTIPAARQLVVHG 119 Query: 122 AIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWL-EVDAGKMEG 180 + VNG V+ Y++ +++ + + + V+ L+ Q + P WL + D +EG Sbjct: 120 HVYVNGSRVDRPGYRLRTGEMIKLDPRMAENPHVQEQLQRGPQVKLPGWLAKTDDAPLEG 179 Query: 181 TFKRKPERSDLSADINEHLIVELYSK 206 P R + N+ IVE Y++ Sbjct: 180 RMIAPPTRESVPFACNDAAIVEYYAR 205 >UniRef50_C6B8C6 RNA-binding S4 domain protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM1325 RepID=C6B8C6_RHILS Length = 146 Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 60/138 (43%), Positives = 86/138 (62%), Gaps = 3/138 (2%) Query: 71 QFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVV 130 QFR + EA RL+G+T ENL+ALLE RLD +VYR F T ARQ ++H ++VNG V Sbjct: 10 QFRRIFNEANRLRGDTSENLIALLESRLDAIVYRAKFAPTPFAARQFINHGHVIVNGMRV 69 Query: 131 NIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFKRKPERSD 190 NI+SY+ DV+ +R K+K+ + V ++ LAE R+ P ++ D KM TF R P +D Sbjct: 70 NISSYRCKAGDVIEVRPKSKQLAVVLESVGLAE-RDVPDYIAADHNKMTATFSRVPALAD 128 Query: 191 --LSADINEHLIVELYSK 206 + + L+VE YS+ Sbjct: 129 VPFAVIMEPQLVVEFYSR 146 >UniRef50_Q2GDI3 30S ribosomal protein S4 n=3 Tax=Anaplasmataceae RepID=RS4_NEOSM Length = 205 Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 69/173 (39%), Positives = 99/173 (57%), Gaps = 7/173 (4%) Query: 37 APGQHGARKP--RLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALL 94 APGQHG R P ++SD+ Q ++ R Y + ++QF N + +A R KGNT +NL++LL Sbjct: 33 APGQHG-RAPVKKISDFYKQNAAQRAFRTYYVIGKKQFANVFSKAYRGKGNTNDNLISLL 91 Query: 95 EGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSR 154 E R+ +V+YR G T ARQL+SHK + VNG +VNI S+ + DVV IR++A Sbjct: 92 ESRVSSVLYRSGMVPTIFAARQLISHKHVTVNGEIVNICSFTLKEGDVVQIRDRASNIPC 151 Query: 155 VKAALELAEQREKPTWLEVDAGKMEGTFKRKPERSDLSADI--NEHLIVELYS 205 V AAL E P +LEVD K P+ D+ + +L+ E +S Sbjct: 152 VVAALN--SNSESPHYLEVDREKRSVKLLVLPKFEDVPYPVVMEPNLVTEYFS 202 >UniRef50_O22020 30S ribosomal protein S4, chloroplastic n=1 Tax=Cyanidioschyzon merolae RepID=RR4_CYAME Length = 190 Score = 113 bits (282), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 68/208 (32%), Positives = 111/208 (53%), Gaps = 23/208 (11%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKC--KIEQAPGQHGARKPRLSDYGVQLREK 58 M+RYLGP++++ RR G + A K K PG+H + +LS+Y L+ + Sbjct: 1 MSRYLGPRVRIIRRLGI-------LPAFTNKSPNKRTGVPGEHAHKTRKLSEYAGVLQGE 53 Query: 59 QKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 QK++ YG+ Q Y+++A + + +TG LL +LE RLD+VVYR GF T ARQLV Sbjct: 54 QKLQYYYGITNNQLARYFRQAKKSRASTGIELLKMLETRLDHVVYRAGFAPTLPAARQLV 113 Query: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 +H + VNG V IAS+ N ++ ++ K+ +++ L++ Q K Sbjct: 114 NHGHVKVNGNQVTIASFACQVNHIIEVKAKSPSSAQLPPYLQVENQFVK----------- 162 Query: 179 EGTFKRKPERSDLSADINEHLIVELYSK 206 + E+ L+ +NE L+VE Y++ Sbjct: 163 ---MIQPVEKDWLAFRVNELLVVEYYTR 187 >UniRef50_P48270 30S ribosomal protein S4, chloroplastic n=6 Tax=Chlorophyceae RepID=RR4_CHLRE Length = 257 Score = 112 bits (280), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 68/174 (39%), Positives = 95/174 (54%), Gaps = 14/174 (8%) Query: 1 MARYLGPKLKLSRREGT--DLFLKSGVRAIDTKCKIEQ----APGQHGARK--------P 46 M+RYLGP+L++ RR G K R + + PGQHG K Sbjct: 1 MSRYLGPRLRVIRRIGKLRGFTRKKPFRRVFKGFGGFKGKVIPPGQHGLTKLLKTRPYDS 60 Query: 47 RLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMG 106 SDY ++L+ KQ++R YG+ ERQ NY ++A ++K +TG+ LL LE RLDN+V+R+ Sbjct: 61 SESDYLIRLKVKQRLRFNYGITERQLVNYVRKAKKIKESTGQVLLQFLEMRLDNIVFRLN 120 Query: 107 FGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALE 160 T ARQL+SH I VN + VNI SY P DV+S+ K + V L+ Sbjct: 121 MAPTIPAARQLISHGHIRVNNKKVNIPSYMCKPKDVISVAMKQRSLQLVNKNLQ 174 >UniRef50_Q6MIP0 30S ribosomal protein S4 B n=1 Tax=Bdellovibrio bacteriovorus RepID=RS4B_BDEBA Length = 208 Score = 110 bits (274), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 73/202 (36%), Positives = 115/202 (56%), Gaps = 7/202 (3%) Query: 7 PKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRIYG 66 P+ K RR T+L A++ + PGQHG ++ + S++ +QL EKQK+R YG Sbjct: 8 PRFKRQRRLLTELPGMGKAGALERRP---YPPGQHGLQRRKYSEFALQLEEKQKLRFHYG 64 Query: 67 VLERQFRNYYKEAARLKG-NTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMV 125 + E QFR +A + K N E L+ LLE RLDNVV+R+GF ++ ARQLVSH ++V Sbjct: 65 LREEQFRRLINKAKKSKATNWVEALVNLLEKRLDNVVFRLGFASSIPAARQLVSHGKVLV 124 Query: 126 NGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWL--EVDAGKMEGTFK 183 NG+ VNI S + D ++++++A Q++V A + A + P+++ E AGK +G Sbjct: 125 NGKKVNIGSQIIKVGDKITLKDEA-YQNQVYMAAKQAPRLPLPSFMAKEDVAGKEQGRLT 183 Query: 184 RKPERSDLSADINEHLIVELYS 205 +P + L++ YS Sbjct: 184 DEPNLEAVPFAFEPGLVIGYYS 205 >UniRef50_B2X261 Ribosomal protein S4 (Fragment) n=1 Tax=Floydiella terrestris RepID=B2X261_9CHLO Length = 518 Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 67/175 (38%), Positives = 100/175 (57%), Gaps = 15/175 (8%) Query: 1 MARYLGPKLKLSRREGTDLFL---KSGVRAIDTKCKIEQ----APGQHG-----ARKPRL 48 M+RYLGP+L+++RR GT + K ++ + + PGQHG +KP Sbjct: 29 MSRYLGPRLRITRRLGTLIGFTRKKPTMKPLYPENPFGLRKVIPPGQHGRAKLFKKKPYE 88 Query: 49 S---DYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRM 105 S D+ ++L+ KQ++R YG+ E+Q NY + A + KG+TG LL LLE RLDN+V+R+ Sbjct: 89 SNEYDFLIRLKFKQRLRYYYGITEKQLFNYVELARKSKGSTGLVLLRLLEMRLDNIVFRL 148 Query: 106 GFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALE 160 T A ARQL+SH I+VN + V I S Q P D+++ K + V L+ Sbjct: 149 HMAPTIAAARQLISHGHILVNKKKVTIPSAQCKPKDLITAAPKIRSMELVSRFLK 203 >UniRef50_Q00NZ9 Rps4 (Fragment) n=5 Tax=Embryophyta RepID=Q00NZ9_PASCC Length = 171 Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 50/114 (43%), Positives = 81/114 (71%) Query: 47 RLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMG 106 R S Y +L+EKQ++R YG+ ERQ Y + A + KG TG+ LL LLE RLDN+++R+G Sbjct: 29 RKSQYCRRLQEKQRLRFHYGLTERQLLKYVRIATKAKGLTGQVLLQLLEMRLDNILFRLG 88 Query: 107 FGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALE 160 +T +ARQLV+H+ I+VN R+V+I SY+ P D+++++++ K + +K +L+ Sbjct: 89 MASTIPQARQLVNHRHILVNDRMVDIPSYRCKPRDLITVKDEQKSKDMIKKSLD 142 >UniRef50_B2X1Z7 Ribosomal protein S4 n=1 Tax=Oedogonium cardiacum RepID=B2X1Z7_OEDCA Length = 2801 Score = 107 bits (266), Expect = 3e-22, Method: Composition-based stats. Identities = 66/165 (40%), Positives = 98/165 (59%), Gaps = 15/165 (9%) Query: 1 MARYLGPKLKLSRREGTDLFL---KSGVRAI--DTKCKIEQA--PGQHG-----ARKPRL 48 M+RYLGP+L++ RR G + L K R + D + I + PGQHG +KP Sbjct: 1 MSRYLGPRLRIVRRLGYLVGLTRKKPSTRLLNPDARRGIRKVLPPGQHGRSKSFKKKPYE 60 Query: 49 S---DYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRM 105 S D+ ++L+ KQ++R YG+ E+Q NY ++A ++KG+TG LL LLE RLDN V+R+ Sbjct: 61 SNEYDFLIRLKLKQRIRYHYGITEKQLVNYVRQARKIKGSTGRVLLRLLEMRLDNTVFRL 120 Query: 106 GFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAK 150 T ARQL++H I VN + V+I SY P D+++ K + Sbjct: 121 HMAPTIRAARQLITHGHIYVNNKKVSIPSYSCKPKDIITPAPKTR 165 >UniRef50_Q06SJ3 30S ribosomal protein S4, chloroplastic n=2 Tax=Viridiplantae RepID=RR4_STIHE Length = 2922 Score = 105 bits (263), Expect = 7e-22, Method: Composition-based stats. Identities = 64/163 (39%), Positives = 94/163 (57%), Gaps = 15/163 (9%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQ-------APGQHG-----ARKPRL 48 M+RYLGP+L+++RR G L A + PG+HG +KP Sbjct: 1 MSRYLGPRLRITRRLGHLSGLTRKKPAFKPLNPVNPFGPRKIIPPGEHGRNKSFKKKPYE 60 Query: 49 S---DYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRM 105 S DY ++L+ KQ++R YG+ ERQ Y ++A ++KG+TG LL LLE RLDN+V+R+ Sbjct: 61 SCEYDYLIRLKLKQRLRFHYGLTERQLVRYVQQAKKIKGSTGRVLLRLLEMRLDNIVFRL 120 Query: 106 GFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREK 148 T ARQL+SH I++N + V I SYQ P D++++ K Sbjct: 121 HMAPTIKAARQLISHGHILINKKKVTIPSYQCEPKDIITVAPK 163 >UniRef50_Q8WL66 Ribosomal protein small subunit 4 (Fragment) n=12 Tax=Embryophyta RepID=Q8WL66_9TRAC Length = 177 Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 57/157 (36%), Positives = 94/157 (59%), Gaps = 5/157 (3%) Query: 53 VQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRA 112 ++L KQ++R YG+ ERQ Y + A + +G+TG+ L LLE RLDNV++ +G +T Sbjct: 21 LRLEAKQRLRFNYGLTERQLLKYVRIARKTRGSTGQVPLQLLEMRLDNVIFHLGMASTIP 80 Query: 113 EARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLE 172 ARQLV+H+ I+VN R+V+I SY+ P D++++R ++ + ++ E + P L Sbjct: 81 AARQLVNHRHILVNNRIVDIPSYRCKPKDIITLRNQSTFCNALRG--ESPGGGKTPDHLT 138 Query: 173 V---DAGKMEGTFKRKPERSDLSADINEHLIVELYSK 206 V + + G R R ++ +INE L+VE YS+ Sbjct: 139 VSLSEGNRPTGVVNRIANRESVNLNINELLVVEYYSR 175 >UniRef50_Q85XL2 Small ribosomal protein 4 (Fragment) n=2 Tax=Embryophyta RepID=Q85XL2_9BRYO Length = 146 Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 53/142 (37%), Positives = 82/142 (57%) Query: 65 YGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIM 124 YG+ ERQ NY + A + KG+TGE LL LLE RLDNV++R+G T ARQ V+H+ I+ Sbjct: 3 YGITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQXVNHRHIL 62 Query: 125 VNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFKR 184 VN R+V+I SY+ P D ++I++ + ++ ++ P L + + +G + Sbjct: 63 VNDRIVDIPSYRXKPQDFITIKDPQXSHAIXSKNIDFHQKYXIPNHLTYNPLENKGLVNQ 122 Query: 185 KPERSDLSADINEHLIVELYSK 206 +R + INE L E YS+ Sbjct: 123 ILBRESIGLKINELLXXEYYSR 144 >UniRef50_Q05FK4 30S ribosomal protein S4 n=1 Tax=Candidatus Carsonella ruddii PV RepID=RS4_CARRP Length = 197 Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 56/142 (39%), Positives = 85/142 (59%), Gaps = 6/142 (4%) Query: 9 LKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRIYGVL 68 +K RREG +L S + ++ K + PG++G K ++SD+G+ LR KQK++R Y + Sbjct: 9 IKFCRREGENLEFFSEKKYLE-KSRSNLTPGENGTEKGKVSDFGLILRTKQKIKRYYCIF 67 Query: 69 ERQFRNYYKEAARLKGNTGEN--LLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVN 126 E++F+ Y +K N N L+ LE RLDNV+YR F +R E+RQL+ H + VN Sbjct: 68 EKEFKKIY---FIIKKNFFNNIDLINFLERRLDNVIYRFNFSISRKESRQLIIHGNVFVN 124 Query: 127 GRVVNIASYQVSPNDVVSIREK 148 I SY +SP DV++I +K Sbjct: 125 YFKNKIPSYLLSPGDVITINKK 146 >UniRef50_O21263 Ribosomal protein S4, mitochondrial n=1 Tax=Reclinomonas americana RepID=RT04_RECAM Length = 249 Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 55/147 (37%), Positives = 87/147 (59%), Gaps = 6/147 (4%) Query: 51 YGVQLREKQKVRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGA 109 Y QL+EKQK+R+ Y V E+QF NYY +A KG G+NL+ +LE RLD ++YR GF Sbjct: 87 YASQLKEKQKLRKFYANVTEKQFYNYYVKAKSFKGKIGDNLIKMLERRLDIIIYRAGFVN 146 Query: 110 TRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKP- 168 + +AR LV+HK ++VN ++ NI+SY V D++SI+ + R + ++ ++ Sbjct: 147 SIYQARLLVNHKHVLVNNKIQNISSYLVQNGDMISIKPEIVNLLRNQYNWDILQKSNGSF 206 Query: 169 ----TWLEVDAGKMEGTFKRKPERSDL 191 +LEVD M + PE +++ Sbjct: 207 LKYLPYLEVDYKTMSCIYLYTPEMNEI 233 >UniRef50_Q6VQL8 Rps4 n=1 Tax=Psammisia dolichopoda RepID=Q6VQL8_9ERIC Length = 142 Score = 103 bits (257), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 46/97 (47%), Positives = 72/97 (74%) Query: 51 YGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGAT 110 Y ++L+EKQK+R YG+ ERQ Y + A + KG+TG+ LL LLE RLDN+++R+G +T Sbjct: 46 YHIRLQEKQKLRFHYGLTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMAST 105 Query: 111 RAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIRE 147 ARQLV+H+ ++VNGR+++I SY+ P D+++ R+ Sbjct: 106 IPGARQLVNHRHVLVNGRIIDIPSYRCKPRDIITARK 142 >UniRef50_UPI000196B648 hypothetical protein CATMIT_01694 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196B648 Length = 91 Score = 103 bits (257), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 47/91 (51%), Positives = 68/91 (74%), Gaps = 1/91 (1%) Query: 117 LVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQRE-KPTWLEVDA 175 +VSH+ + VNG+ VN+ SYQV D++++ E+A+KQ RV+ +L ++ Q + P+W+EVD+ Sbjct: 1 MVSHRGVTVNGKSVNLPSYQVKAGDIIALSERAQKQLRVQESLTVSSQMDLSPSWVEVDS 60 Query: 176 GKMEGTFKRKPERSDLSADINEHLIVELYSK 206 K G FK P+R+DL ADINE LIVELYSK Sbjct: 61 KKFSGVFKAVPDRADLPADINEALIVELYSK 91 >UniRef50_C6UNA0 30S ribosomal subunit protein S4 n=1 Tax=Candidatus Hodgkinia cicadicola Dsem RepID=C6UNA0_HODCD Length = 207 Score = 102 bits (254), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 69/209 (33%), Positives = 104/209 (49%), Gaps = 9/209 (4%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR-KPRLSDYGVQLREKQ 59 M R L PK K RR G L+ GV ++ APGQHG + + +S+Y ++L KQ Sbjct: 1 MNRRLRPKFKFDRRVGESLW---GVSRSSVN-RVPTAPGQHGYKTRSSVSEYAIRLTAKQ 56 Query: 60 KVRRIYGVL-ERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 K++ Y L E + YK A + +G+ NL+ +LE RLD +VYR A+ ARQL+ Sbjct: 57 KLKFYYSNLTESKLVKAYKTALKYRGDVAHNLVRVLERRLDVLVYRARLAASFRAARQLI 116 Query: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 SH ++VN V+I S++ P DV + + VK A+ L +R P + D + Sbjct: 117 SHGHVLVNNSKVDICSFECKPGDVFRVAPCFVNAAVVKEAV-LGCERSVPNHISCDFKHL 175 Query: 179 EGTFKRKPERSD--LSADINEHLIVELYS 205 + T + P + L+ E YS Sbjct: 176 KFTLVKPPAACGALFPVAMCPELVAEYYS 204 >UniRef50_Q06J34 30S ribosomal protein S4, chloroplastic n=1 Tax=Bigelowiella natans RepID=RR4_BIGNA Length = 194 Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/205 (36%), Positives = 102/205 (49%), Gaps = 13/205 (6%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 MARY G ++K+ RR G L G + K P + + LS YG L+EKQK Sbjct: 1 MARYRGSRVKVIRRLG----LLPGFTS-----KSSNKPQNNNKQ---LSQYGFHLQEKQK 48 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 +R YG+ E + Y K A R +GN+G+ LL LLE RLD ++YR GF T A ARQL+SH Sbjct: 49 LRYNYGISEHELIKYVKSARRKRGNSGDKLLQLLEMRLDTLLYRTGFVPTVASARQLISH 108 Query: 121 KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEG 180 I VNG+ V+I + S +D + I ++ K K + L + Sbjct: 109 GHINVNGKKVDIPGFNCSISDKIVINKEILKSLNDKNN-SFSTLNCSHLVLNELNNDLTI 167 Query: 181 TFKRKPERSDLSADINEHLIVELYS 205 T P+ L IN L++E YS Sbjct: 168 TVTNLPDIQVLGYSINILLVLEYYS 192 >UniRef50_D0PPV5 Small ribosomal protein 4 (Fragment) n=1 Tax=Austrotaxus spicata RepID=D0PPV5_9CONI Length = 199 Score = 96.7 bits (239), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 97/167 (58%), Gaps = 6/167 (3%) Query: 44 RKPRLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVY 103 R P+ S Y ++L++KQKV Y ERQ A R +G E LL LLE LDN+++ Sbjct: 31 RAPKPSKYPIRLKKKQKVGFHYKFTERQLLQCSHIARRSEGYIVEVLLQLLEINLDNIIF 90 Query: 104 RMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAE 163 ++G +T AR+L +H+ I++N R+V+I SY P D++SI+++ + ++ + ++LA Sbjct: 91 QLGMASTIPGARKLFNHRDILLNNRIVDIPSYHCKPQDLISIKDQQRSRNIINKNIDLA- 149 Query: 164 QREK---PTWLEVDAGKMEGT--FKRKPERSDLSADINEHLIVELYS 205 +R+K P L + K + K+ + +S INE L++E YS Sbjct: 150 KRDKMRVPNLLNLKKEKSQYIELVKKIIDSKWISLKINELLVIEYYS 196 >UniRef50_D1N636 Ribosomal protein S4 n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N636_9BACT Length = 200 Score = 95.9 bits (237), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 61/184 (33%), Positives = 97/184 (52%), Gaps = 11/184 (5%) Query: 29 DTKC---KIEQAPGQHG-ARKPRLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKG 84 D KC K A G HG R+ +LS YG L EKQK++ Y + E+Q + Y +A G Sbjct: 22 DPKCPSVKRPYAAGPHGKGRRVKLSTYGELLMEKQKLKNYYAISEKQLQIAYAKAKAGTG 81 Query: 85 NTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVS 144 T E L LE RLD +V+R GF T A+Q V+H I+V+G+ ++ +S V V+S Sbjct: 82 QTHEKLFRSLEQRLDAMVFRAGFAPTIFAAKQFVNHGHILVDGKRIDRSSCLVKEGQVIS 141 Query: 145 IREKAKKQSRVKAALELAEQREK--PTWLEVDAGKMEGTFKRKPERSDLSADINEHLIVE 202 I ++ A E+A++ P ++EVD ++ T R P+ ++ + ++E Sbjct: 142 I-----DAAKSPAIAEIAKKGNSTIPAYMEVDLENLKATLTRAPQLEEIPVSVKIMSVIE 196 Query: 203 LYSK 206 Y++ Sbjct: 197 YYAR 200 >UniRef50_Q9TCC4 Ribosomal protein S4 n=1 Tax=Nephroselmis olivacea RepID=Q9TCC4_NEPOL Length = 238 Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 49/141 (34%), Positives = 78/141 (55%), Gaps = 5/141 (3%) Query: 49 SDYGVQLREKQKVRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGF 107 SDY Q +Q + IYG + ++Q N +A R KG+ G L+ LLE RLD ++YR F Sbjct: 82 SDYFSQFTTRQTLSSIYGNIQKKQMNNLVNQAFRRKGHAGSRLITLLESRLDVILYRASF 141 Query: 108 GATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQR-- 165 + ARQL++H IMVNG + N ++ +SP D+VS+ + +K +++ +++ Sbjct: 142 CTSIFTARQLINHNKIMVNGIISNSSALLLSPGDIVSVVHNY--EMTLKNSIKSIQKKNL 199 Query: 166 EKPTWLEVDAGKMEGTFKRKP 186 KP +LE+ M F P Sbjct: 200 NKPNYLEISYNLMTIVFLYAP 220 >UniRef50_Q0P3J0 Mitochondrion, complete genome n=1 Tax=Ostreococcus tauri RepID=Q0P3J0_OSTTA Length = 209 Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 86/163 (52%), Gaps = 7/163 (4%) Query: 47 RLSDYGVQLREKQKVRRIYGVLERQ-FRNYYKEAARLKGNTGENLLALLEGRLDNVVYRM 105 +LS++ +QLR KQ V +YG L+ Q F++ +++ + +G +LLE RLD+ + ++ Sbjct: 44 KLSNFALQLRAKQLVSALYGQLKLQHFKHLLQQSQKYRGKLAHIFFSLLEKRLDSCLVQL 103 Query: 106 GFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQ--SRVKAALELAE 163 F T ARQL++HK + +NG ++ + P D VS + + + S V+ A L + Sbjct: 104 KFAPTFLAARQLINHKKVCINGNIITAPGVLLKPGDSVSFIPEIQTRVASNVQTACALHD 163 Query: 164 QRE----KPTWLEVDAGKMEGTFKRKPERSDLSADINEHLIVE 202 ++ KP EV+ +E F P++ I L+++ Sbjct: 164 SKKVLAYKPLHFEVNYKTLEAIFLFSPQQVHYPTRIEPELVLK 206 >UniRef50_Q2EEX1 Plastid 30S ribosomal protein S4 n=1 Tax=Helicosporidium sp. ex Simulium jonesi RepID=RR4_HELSJ Length = 173 Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 52/145 (35%), Positives = 81/145 (55%), Gaps = 6/145 (4%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKP--RLSDYGVQLREK 58 M RY GP+L++ RR G I +K + P H RK R S YG++L K Sbjct: 1 MGRYRGPRLRIIRRLGDLPLFTKKKPHIASK----RLPLGHPVRKIKRRPSIYGLRLLAK 56 Query: 59 QKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 Q+ YG+ + Q +NY K+A +G+ +NL+ LLE RLD+ +YR G +T A ARQL+ Sbjct: 57 QRCCYSYGLRDYQLKNYIKKARNAQGDPIKNLIFLLESRLDSKIYRSGIVSTMAAARQLI 116 Query: 119 SHKAIMVNGRVVNIASYQVSPNDVV 143 +H ++V+ + I SY + + ++ Sbjct: 117 THGHVLVDNIKITIPSYSCNESQIL 141 >UniRef50_UPI0001699071 30S ribosomal protein S4 n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001699071 Length = 103 Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 41/64 (64%), Positives = 49/64 (76%) Query: 143 VSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFKRKPERSDLSADINEHLIVE 202 VSIREKAKKQ R++ AL LAEQ W+EVD M+G FKR P+R+DL A+INE L+VE Sbjct: 40 VSIREKAKKQVRIQGALSLAEQYGFVDWVEVDPKAMKGVFKRVPDRADLPAEINEQLVVE 99 Query: 203 LYSK 206 LYSK Sbjct: 100 LYSK 103 >UniRef50_C1IXJ0 Ribosomal protein S4 n=1 Tax=Picea sitchensis RepID=C1IXJ0_PICSI Length = 201 Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 60/206 (29%), Positives = 101/206 (49%), Gaps = 7/206 (3%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 M+RY GP+LK+ RR T L S R + K + ++ + ++S Y ++ EKQK Sbjct: 1 MSRYRGPRLKIIRRLKTLPGLTSK-RPKNRKDSMNRSSSR------KISQYRIRPEEKQK 53 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 +R YG+ ERQ Y + A R KG+TG+ +H Sbjct: 54 LRFHYGLTERQLLKYVRIARRAKGSTGQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNH 113 Query: 121 KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEG 180 I VN +V+I SY P DV++IR++ + ++ ++ L+L ++ + P L + + +G Sbjct: 114 VHIRVNDHMVDIPSYPCKPQDVITIRDQQRLRAIIRKNLDLFQRDKLPNHLTFHSLQYKG 173 Query: 181 TFKRKPERSDLSADINEHLIVELYSK 206 + + +S INE L+VE YS+ Sbjct: 174 FINQIIDSKWISLKINELLVVEYYSR 199 >UniRef50_C1KRH3 Ribosomal protein S4 n=1 Tax=Micromonas sp. RCC299 RepID=C1KRH3_9CHLO Length = 239 Score = 77.0 bits (188), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 86/172 (50%), Gaps = 14/172 (8%) Query: 44 RKPRLSDYGVQLREKQKVRRIYGVLERQ-FRNYYKEAARLKGNTGENLLALLEGRLDNVV 102 RK + + + QL+ KQ V+ +YG L F ++YK++ ++ G + N + LE RLD ++ Sbjct: 50 RKKKRTQFAYQLQAKQIVKALYGNLNTSYFISFYKKSLKMIGKSNINFFSQLERRLDCIL 109 Query: 103 YRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELA 162 YR F + EARQ++SH+ + VN +N Y V P D++S K AL + Sbjct: 110 YRANFVTSFQEARQVISHQKVCVNTVKINKPGYIVKPGDIISFVSDIKDTQ----ALSIT 165 Query: 163 EQREKPTWLEV--DAGKMEGTFKR--KPER---SDLSADINEH--LIVELYS 205 +P ++ D G ++ R P + + +IN H IV LY+ Sbjct: 166 NFLNRPATIKALNDKGSLQSKNNRALSPTKVFYKPVHLEINYHTLTIVYLYT 217 >UniRef50_P26866 Ribosomal protein S4, mitochondrial n=4 Tax=Streptophytina RepID=RT04_MARPO Length = 196 Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 85/159 (53%), Gaps = 13/159 (8%) Query: 49 SDYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNT----GENLLALLEGRLDNVVYR 104 SD+ +QL+ +K+ YG L K+ R K +T +LL +E RLD ++ R Sbjct: 43 SDFSIQLQTIKKLSLFYGNLP------IKKMQRAKTHTYIDKKNSLLFNIEKRLDVILVR 96 Query: 105 MGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKK--QSRVKAALELA 162 + F +T +ARQL+SHK I VN + VNI +QVS D++SI+E + +S ++ + Sbjct: 97 LNFCSTMFQARQLISHKNICVNYKKVNIPGFQVSNGDLISIQENSLDFFKSNIRKNFQTN 156 Query: 163 E-QREKPTWLEVDAGKMEGTFKRKPERSDLSADINEHLI 200 +R KP LEV+ ++ +P++ I+ L+ Sbjct: 157 RIRRMKPNHLEVNYKTLKAVVLYEPQQIQFPYKIDLDLL 195 >UniRef50_Q9F8G5 Ribosomal protein S4 (Fragment) n=1 Tax=Carboxydothermus hydrogenoformans RepID=Q9F8G5_CARHY Length = 155 Score = 75.9 bits (185), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 55/154 (35%), Positives = 73/154 (47%), Gaps = 13/154 (8%) Query: 2 ARYLGPKLKLSRREGTDLFLKSGVRAID--TKCKIEQAPGQHGARKPRLSDYGVQLREKQ 59 RY P K+ REG +LF K D + + + P Q G +P ++Y + R K Sbjct: 6 GRYTVPSXKICSREGXNLFSKXDRXDTDXXSMARRNKGPXQXGXTRPMPTEYAPRXRXKL 65 Query: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLE------GRLDNVVYRMGFGATRAE 113 K + IYGV E QF+ A R G TGEN + LLE GR D +RA Sbjct: 66 KAKXIYGVZEVQFQTXXVMAERXXGTTGENXVVLLERRSDKHGRSDRTTL-----MSRAL 120 Query: 114 ARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIRE 147 ARQ+V +N R VNI SY V +V+ +E Sbjct: 121 ARQVVRLNLTPLNXRQVNILSYVVKXGEVIIPKE 154 >UniRef50_Q0YR48 30S ribosomal protein S4 n=1 Tax=Chlorobium ferrooxidans DSM 13031 RepID=Q0YR48_9CHLB Length = 83 Score = 75.9 bits (185), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 35/83 (42%), Positives = 50/83 (60%) Query: 124 MVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFK 183 M+NG+ VNI SY VSP D++ R+++K V +L A + PTW++VD + F Sbjct: 1 MINGKKVNIPSYLVSPGDLIEFRQRSKNMDAVTDSLNKAPESRIPTWIQVDKANQKSVFL 60 Query: 184 RKPERSDLSADINEHLIVELYSK 206 PER ++ NE L+VELYSK Sbjct: 61 SVPERVEIQEPYNEQLVVELYSK 83 >UniRef50_A6YEB5 Ribosomal protein S4 n=1 Tax=Chlorokybus atmophyticus RepID=A6YEB5_CHLAT Length = 267 Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 42/99 (42%), Positives = 63/99 (63%), Gaps = 2/99 (2%) Query: 49 SDYGVQLREKQKVRRIYGVLERQ-FRNYYKEAARLKG-NTGENLLALLEGRLDNVVYRMG 106 S+Y +L +QK+ IYG L+R F +K+ R + + L+LLE RLD V+ R+ Sbjct: 47 SNYSKELIARQKLSAIYGNLKRDTFIKLFKKGRRARQVKLPDTFLSLLERRLDVVLLRLK 106 Query: 107 FGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSI 145 + +T +EARQL+SHK I+VN VNI+SY + D++SI Sbjct: 107 YCSTLSEARQLISHKKILVNNETVNISSYLLKNGDLISI 145 >UniRef50_Q2WGC2 Ribosomal protein S4 (Fragment) n=2 Tax=Selaginella RepID=Q2WGC2_SELUN Length = 196 Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 57/208 (27%), Positives = 96/208 (46%), Gaps = 16/208 (7%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKP--RLSDYGVQLREK 58 +R+ GP+ K+ RR G K + PG P + Y ++ EK Sbjct: 1 TSRHRGPRAKIVRRPGRSP-------GPTRKRPAGRKPGYANQSTPTTKAPQYRIRSEEK 53 Query: 59 QKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 Q+ R +G E+Q Y + A R KG+TG+ L E R DN++ R+G +T ARQ V Sbjct: 54 QRSRLHHGPTEQQSLRYVRIAKRAKGSTGQVSLQSPETRSDNIIPRLGAASTTPGARQSV 113 Query: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 +H+ N R +++ SY+ P D ++ R+ ++ +S ++ + EQ + Sbjct: 114 THERAPANDRAISVPSYRRKPADAIAARQ-SRCRSVGNSSNRIGEQDHSTLYPHA----- 167 Query: 179 EGTFKRKPERSDLSADINEHLIVELYSK 206 G R +R + + NE L VE + + Sbjct: 168 -GLAVRPVDRKWIDPNTNESLAVEYHPR 194 >UniRef50_UPI000169316E RpsD n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI000169316E Length = 82 Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 38/84 (45%), Positives = 56/84 (66%), Gaps = 2/84 (2%) Query: 123 IMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTF 182 + VNG+ V+IASYQVS DV+ +RE+++ +K ALE + P +LE + +EG F Sbjct: 1 MTVNGKKVDIASYQVSVGDVIGLRERSRNLKSIKEALE--NRNFLPAYLEFNEQALEGKF 58 Query: 183 KRKPERSDLSADINEHLIVELYSK 206 R PERS+L+ +I+E IVE YS+ Sbjct: 59 IRLPERSELAQEIDEKQIVEFYSR 82 >UniRef50_Q9G884 Ribosomal protein S4 n=1 Tax=Malawimonas jakobiformis RepID=Q9G884_9EUKA Length = 225 Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/213 (23%), Positives = 103/213 (48%), Gaps = 30/213 (14%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 M + K ++ ++ G DL+ K ++ K GQHG K + + ++ K Sbjct: 1 MTKRFKQKYRICKQIGEDLWGK-----LNKKINYNVRSGQHGKIKKKRKEIAFIYKDNNK 55 Query: 61 --------------VRRIY-GVLERQFRNYYKEAARLKGNTGEN-----LLALLEGRLDN 100 +R+ Y + ++QF N +K+ L N N L+ LLE RLD Sbjct: 56 KKINTVNKTQFIYKLRKFYSNISKKQFDNLFKKGNLLNANNKYNTNSKYLINLLERRLDT 115 Query: 101 VVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALE 160 +++R+ + ++ ARQL++H I++NG +VN++S+ V+ D + +++ ++K + K ++ Sbjct: 116 ILFRINWASSFFNARQLINHGHILINGNIVNVSSHLVNIGDKIEVKKDSQKLLK-KNLID 174 Query: 161 LAEQRE----KPTWLEVDAGKMEGTFKRKPERS 189 + ++ P+++EV+ + P S Sbjct: 175 RIKNKQITINCPSYIEVNYNILCAIVIFNPTES 207 >UniRef50_Q7YN81 Apicoplast 30S ribosomal protein S4 n=1 Tax=Eimeria tenella RepID=RR4_EIMTE Length = 200 Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 78/150 (52%), Gaps = 10/150 (6%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 M RYLGPKLK +R + TK I + K LS Y ++L EKQK Sbjct: 1 MLRYLGPKLKKLKRLNIHM-----QPEFSTKYFILNTNKYNN--KMILSFYLLELFEKQK 53 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGE-NLLALLEGRLDNVVYRMGFGATRAEARQLVS 119 ++ + + E+ + Y K N + NL+ ++E RLDN ++ +G+ T A+A+QL+ Sbjct: 54 LKFTFSLSEKIIKKY--ILFMHKYNYKKFNLINIIEIRLDNTIFNLGYSITIAQAKQLII 111 Query: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKA 149 H VN +++ I S+ + D++++ K+ Sbjct: 112 HGYFFVNFKLIKIPSFLLKKGDIITLSPKS 141 >UniRef50_Q9XQQ7 Apicoplast 30S ribosomal protein S4 n=1 Tax=Toxoplasma gondii RepID=RR4_TOXGO Length = 198 Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 64/114 (56%), Gaps = 7/114 (6%) Query: 35 EQAPGQHGARKPRLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALL 94 E P + G + S + +QL EKQK++ Y + E Q + Y+K LK NL+ ++ Sbjct: 31 ELVPIKKG----KTSSFRIQLLEKQKLKYNYRLKENQIKKYFKYIKLLKI---FNLIQII 83 Query: 95 EGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREK 148 E RLD ++R+GF + +ARQL++H I +N +V S+ ++ D++ I K Sbjct: 84 ELRLDATIFRLGFAKSINQARQLITHGFIFINSILVKKPSFILTEKDLIYINPK 137 >UniRef50_P0C5Y3 Ribosomal protein S4, mitochondrial n=3 Tax=Dictyostelium RepID=RT04_DICCI Length = 325 Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 38/98 (38%), Positives = 60/98 (61%), Gaps = 10/98 (10%) Query: 67 VLERQFRNYY-----KEAARL----KGNTGENLLALLEGRLDNVVYRMGFGATRAEARQL 117 +L R FR +Y K+ RL KGN + ++ LE R+D ++ R GF + EARQL Sbjct: 109 ILYRLFRKFYINLKLKQFKRLYKKYKGNE-KIIIQQLEKRIDMILLRSGFVRSIYEARQL 167 Query: 118 VSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRV 155 ++HK I+VNG + I SY ++ D++SI+E + KQ+ + Sbjct: 168 INHKHILVNGNIARIPSYTLNVGDIISIKEGSHKQNLI 205 >UniRef50_B2MWU8 Ribosomal protein S4 n=1 Tax=Hemiselmis andersenii RepID=B2MWU8_9CRYP Length = 275 Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 86/169 (50%), Gaps = 8/169 (4%) Query: 1 MARYLGPKLKLSRR-EGTDLFLKSGVRAIDTKCKIEQAPGQHGARKP--RLSDYGVQLRE 57 M + L K K+ + +G L + VRAI + P ++ R+S +G L Sbjct: 1 MTKRLNSKFKVCKNIKGNRKNLWAVVRAITFRSIRILKPDSISVKQKLNRISSFGKYLNG 60 Query: 58 KQKVRRIY-GVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQ 116 KQ + + Y + E+ F++ ++A + K T + L++LLE RLD V+YR GF + ARQ Sbjct: 61 KQNLIKFYCNISEKLFQSLLQQAEKSKPKTIDKLISLLESRLDVVLYRSGFVNSLHMARQ 120 Query: 117 LVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQR 165 L++H I +N + V + + D+V I K+ +K + + +QR Sbjct: 121 LINHGFICINSKTVYNLNITLKSGDIVEI----KRDFPIKELITILKQR 165 >UniRef50_Q0YR49 Ribosomal protein S4 n=1 Tax=Chlorobium ferrooxidans DSM 13031 RepID=Q0YR49_9CHLB Length = 84 Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 37/77 (48%), Positives = 54/77 (70%), Gaps = 5/77 (6%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQ 59 MAR+ G K+SRR G L K+ + ++ + PGQHG +RK ++S+Y +QLREKQ Sbjct: 1 MARFRGSITKVSRRLGVALTPKA-EKYLERR---PFPPGQHGQSRKGKVSEYALQLREKQ 56 Query: 60 KVRRIYGVLERQFRNYY 76 K++ IYG+LE+QFRNY+ Sbjct: 57 KMKYIYGILEKQFRNYF 73 >UniRef50_Q47611 RpsD protein (Fragment) n=1 Tax=Escherichia coli RepID=Q47611_ECOLX Length = 46 Score = 62.8 bits (151), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 31/31 (100%), Positives = 31/31 (100%) Query: 147 EKAKKQSRVKAALELAEQREKPTWLEVDAGK 177 EKAKKQSRVKAALELAEQREKPTWLEVDAGK Sbjct: 1 EKAKKQSRVKAALELAEQREKPTWLEVDAGK 31 >UniRef50_Q9G8X0 Ribosomal protein S4 n=1 Tax=Rhodomonas salina RepID=Q9G8X0_RHDSA Length = 206 Score = 59.3 bits (142), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 75/152 (49%), Gaps = 3/152 (1%) Query: 47 RLSDYGVQLREKQKVRRIY-GVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRM 105 R+S++G L+ KQ +R Y + E+ F+ K A + T + +++LE RLD +++R Sbjct: 43 RVSNFGKLLQTKQNLRFFYCNIKEKVFKKQLKNAIKSPLKTVDKFISILEKRLDIILFRA 102 Query: 106 GFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIR-EKAKKQSRVKAAL-ELAE 163 F + +A+Q++SH IM+N + + + ++ D + ++ EK K R+ + Sbjct: 103 SFIFSLYQAKQIISHGHIMINNKTIYKLNKKLKQFDFIKLKIEKNKILKRIFDRFKDKIL 162 Query: 164 QREKPTWLEVDAGKMEGTFKRKPERSDLSADI 195 ++ P LEV F P +L I Sbjct: 163 EKTIPVHLEVSFKNFTICFLWPPSFFELYYPI 194 >UniRef50_C6FG20 Ribosomal protein S4 n=2 Tax=Isoetes engelmannii RepID=C6FG20_ISOEN Length = 254 Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/100 (39%), Positives = 52/100 (52%), Gaps = 7/100 (7%) Query: 49 SDYGVQLREKQKVRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGF 107 S + VQLR Q++ YG L R K N ++LL LE RLD ++ F Sbjct: 55 SYFSVQLRTIQRLSLFYGKSLPR------KAKKHTYLNKRKSLLYYLEKRLDVILVCTHF 108 Query: 108 GATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIRE 147 +T ARQL+SHK I VN VN ++VS D++SI E Sbjct: 109 CSTICGARQLISHKKICVNSETVNTHGFRVSNGDLISIVE 148 >UniRef50_C1KRA9 Ribosomal protein S4 n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1KRA9_9CHLO Length = 261 Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 3/100 (3%) Query: 51 YGVQLREKQKVRRIYGVLERQ-FRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGA 109 YG+ L K +YG F N + +A + + + L LLE RLD ++YR F Sbjct: 57 YGMTLLRILKT--VYGPSNTSTFVNLFSKAKKTSVPSLQAFLQLLEMRLDVILYRARFAT 114 Query: 110 TRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKA 149 + + Q ++H + VNG+VV +SP DVVSI +A Sbjct: 115 SYLQLHQWIAHGKVCVNGQVVTTKGRLLSPGDVVSIHPQA 154 >UniRef50_P46755 Ribosomal protein S4, mitochondrial n=1 Tax=Acanthamoeba castellanii RepID=RT04_ACACA Length = 374 Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 31/126 (24%), Positives = 65/126 (51%), Gaps = 4/126 (3%) Query: 83 KGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDV 142 KGN+ L +LEGRL+N + R+ + ++ + + + VN +++N SY ++ N++ Sbjct: 247 KGNSFAVFL-MLEGRLENFLMRLNLFPSIYFIKKFIEYGNVFVNNKIINYTSYHLNFNEI 305 Query: 143 VSIREKAKKQSRVKAALELAEQR---EKPTWLEVDAGKMEGTFKRKPERSDLSADINEHL 199 VS +K K+ +L +++ P+++EVD + R P+ L+ ++ +L Sbjct: 306 VSFNKKYYKKLYFFIKSKLRQRKVIINAPSFVEVDYKLLVAMLIRNPDELALTKPLSFNL 365 Query: 200 IVELYS 205 + S Sbjct: 366 YTKFLS 371 >UniRef50_Q9T225 Ribosomal protein S4 n=3 Tax=Phytophthora RepID=Q9T225_PHYIN Length = 153 Score = 56.2 bits (134), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 57/98 (58%), Gaps = 3/98 (3%) Query: 51 YGVQLREKQKVRRIYGVL-ERQFRNYYKEAARL--KGNTGENLLALLEGRLDNVVYRMGF 107 + +L EKQ+ R YG + E Q +N +++ ++ K N + + LLE RLD + R+ Sbjct: 54 FQKRLFEKQQFRNFYGCIHEYQLKNIFRKLSKKDNKINIFKKFIILLESRLDINLVRLKL 113 Query: 108 GATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSI 145 T +A+QL++HK I VN ++++ ++ + D++ I Sbjct: 114 VKTIFKAKQLINHKKIKVNNKIISKPNFILQKGDIIHI 151 >UniRef50_P46743 Ribosomal protein S4, mitochondrial n=1 Tax=Prototheca wickerhamii RepID=RT04_PROWI Length = 511 Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 59 QKVRRIYGVLE-RQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQL 117 +K++ YG + +Q +A + G +N +L+E RLD V+YR GF T ARQ Sbjct: 164 KKLKMFYGFIPLKQLHKILVQAKAMPGYFSKNFFSLIEKRLDVVLYRSGFTKTIVAARQA 223 Query: 118 VSHKAIMVNGRVVNIASYQVSPNDVVSIREK 148 H I VN +V I S + D++S + + Sbjct: 224 CRHSQIYVNSKVCRIPSTILESGDIISYKNQ 254 >UniRef50_C4R204 Mitochondrial ribosomal component of the small subunit n=1 Tax=Pichia pastoris GS115 RepID=C4R204_PICPG Length = 469 Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 5/68 (7%) Query: 84 GNTGEN-----LLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVS 138 GNT E A+LE RLD ++R F ++ +ARQ + HK + VNG V+ +Y++ Sbjct: 86 GNTDETPMMLQTFAVLEKRLDVALFRAMFASSVRQARQYIIHKYVSVNGVVMRHPNYELK 145 Query: 139 PNDVVSIR 146 P DV S+R Sbjct: 146 PGDVFSVR 153 >UniRef50_Q2TUL0 Ribosomal protein S4 n=11 Tax=Phaeophyceae RepID=Q2TUL0_FUCVE Length = 271 Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 2/84 (2%) Query: 61 VRRIYGVL-ERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119 +RR YG L ++F+ K ++ KG++ + L+ LE RLD +YR+GF + +RQ + Sbjct: 100 IRRFYGDLGHKKFKKSCKLLSKSKGSS-QKLIGNLEKRLDVTLYRLGFFHSILYSRQAIL 158 Query: 120 HKAIMVNGRVVNIASYQVSPNDVV 143 H I+VNG+ +N ++ + D V Sbjct: 159 HNKIIVNGKFINNGNFMLRKGDFV 182 >UniRef50_Q3S297 Ribosomal protein S4 n=1 Tax=Thalassiosira pseudonana RepID=Q3S297_THAPS Length = 248 Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 5/96 (5%) Query: 55 LREKQKVRRIYGVLERQF-----RNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGA 109 L+ KQ++ YG L + + + KE+ + L+ LE RLD ++YR F Sbjct: 89 LQNKQRLSLFYGNLRKSYLKKLVKESLKESKHINSQATVLLIEKLETRLDTILYRTHFCH 148 Query: 110 TRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSI 145 + A+QL+SH+ I VN ++V + + D++++ Sbjct: 149 SFRSAKQLISHQKIYVNNKIVKHNFHALKKGDIITL 184 >UniRef50_Q2TUD0 Ribosomal protein S4 n=1 Tax=Dictyota dichotoma RepID=Q2TUD0_DICDH Length = 237 Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 12/127 (9%) Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 VRR YG L + ++ K T ++ + LE RL +YR+GF ++ E++Q + H Sbjct: 85 VRRFYGDLRFEML----KSMCNKAKTVDSFMKCLESRLGINLYRLGFFSSVFESKQAILH 140 Query: 121 KAIMVNGRVVNIASYQVSPNDVVSIREK--AKKQSRV---KAALELAEQ---REKPTWLE 172 ++VNG + Y + P D++ K +K +SR+ + + +++ P W++ Sbjct: 141 GKVLVNGVKITFDHYILKPGDLIEFCPKFRSKLKSRMITRRKNINYSDRLKLNPTPFWIQ 200 Query: 173 VDAGKME 179 D + Sbjct: 201 TDYSNLS 207 >UniRef50_B2XXA8 Ribosomal protein S4 n=1 Tax=Dictyostelium fasciculatum RepID=B2XXA8_9MYCE Length = 276 Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 10/107 (9%) Query: 93 LLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQ 152 +LEGRLD+V+ R T AR + +K I VNG+V +Y + D + +R +K+ Sbjct: 150 ILEGRLDSVLVRSQLVRTMYAARHFIKYKHISVNGKVKTRLNYLIKIGDFIGMR---RKK 206 Query: 153 SRVKAALELAEQREK-------PTWLEVDAGKMEGTFKRKPERSDLS 192 +V ++L E K P +LE D + T KP+ S+++ Sbjct: 207 MKVATKIKLFELVRKGLMIGIGPAYLETDFRLLLTTMVYKPKMSEIN 253 >UniRef50_Q6E781 Ribosomal protein S4 n=1 Tax=Saprolegnia ferax RepID=Q6E781_SAPFE Length = 266 Score = 49.3 bits (116), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 3/98 (3%) Query: 51 YGVQLREKQKVRRIYGVL-ERQFRNY--YKEAARLKGNTGENLLALLEGRLDNVVYRMGF 107 Y +L KQ+ + YG + E Q +N Y + N + +LE RLD +++R Sbjct: 95 YKERLFAKQQFKNFYGCIPEYQLKNLFNYLKNRNNNNNIIHKFIIVLESRLDMIIFRSKI 154 Query: 108 GATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSI 145 T EA+Q+++H I VN +++ ++Y + D++++ Sbjct: 155 AKTIFEAKQIINHGKIKVNNKIITSSNYILKRGDIITL 192 >UniRef50_D2JP76 Ribosomal protein S4 n=1 Tax=Synedra acus RepID=D2JP76_9STRA Length = 246 Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 8/108 (7%) Query: 51 YGVQLREKQKVRRIYGVLERQFR----NYY----KEAARLKGNTGENLLALLEGRLDNVV 102 Y L KQK YG L+++F N+ K +LK LL+LLE RLD ++ Sbjct: 78 YKTILHNKQKTSFYYGGLKKKFWKKQINHVLTRKKSFFKLKSFKHLALLSLLERRLDVLL 137 Query: 103 YRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAK 150 YR F + ARQL+ + +N V+ +S ++ ND VS+ + +K Sbjct: 138 YRAHFAPSIKYARQLIQQGHVNLNNSVITESSVRLKNNDKVSLNKISK 185 >UniRef50_Q31708 Ribosomal protein S4, mitochondrial n=44 Tax=Magnoliophyta RepID=RT04_ARATH Length = 362 Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 35/54 (64%) Query: 94 LEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIRE 147 LE R D + R+ F T +ARQL+SH+ + VN +V+I +++S D++S +E Sbjct: 103 LETRFDVIPLRLYFLETIPQARQLISHRRVCVNKGMVSITHFKLSHGDIISFQE 156 >UniRef50_C7ZPJ0 Putative uncharacterized protein n=2 Tax=Nectriaceae RepID=C7ZPJ0_NECH7 Length = 511 Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 34/56 (60%) Query: 91 LALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIR 146 A LE RLD V+R F ++ +ARQ + H A+ VNG+ + SY ++P D+ ++ Sbjct: 157 FAPLERRLDTAVFRAMFASSVRQARQFIIHGAVKVNGKKMVHPSYALNPGDMFQVQ 212 >UniRef50_B2XX60 Ribosomal protein S4 n=2 Tax=Polysphondylium pallidum RepID=B2XX60_POLPA Length = 268 Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/174 (24%), Positives = 78/174 (44%), Gaps = 16/174 (9%) Query: 34 IEQAPGQHG-ARKPRLSDYGVQLREKQKVRRIYGVLERQFRNYYKEA---------ARLK 83 ++Q H R+ +++ V L+ +V + R+FR YYK ++LK Sbjct: 71 LKQIKQNHWRIRQTKITLKKVNLKNMNRVYYRKFSIYRKFRYYYKNLKIRQIKNIYSQLK 130 Query: 84 GNTGEN--LLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPND 141 N + + +LE RLD+++ R F T AR + + I VNG ++N +Y + D Sbjct: 131 RNKKKVKIFMEILECRLDSILVRSNFFQTMYSARHFIKYNHISVNGILINKINYNTNIGD 190 Query: 142 VVSIREKAKKQSRVKAALELAEQRE----KPTWLEVDAGKMEGTFKRKPERSDL 191 ++ + + K K +L + + P +LE D + T KP + ++ Sbjct: 191 LIGLNKNDIKLKIKKILKKLVRKHKFISTSPAFLETDYRLLLTTLIYKPRKEEI 244 >UniRef50_P27929 37S ribosomal protein NAM9, mitochondrial n=13 Tax=Saccharomycetales RepID=NAM9_YEAST Length = 486 Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 33/56 (58%) Query: 91 LALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIR 146 A+LE RLD ++R F ++ +ARQ + H + VNG + SY + P D+ S++ Sbjct: 98 FAVLEKRLDFALFRAMFASSVRQARQFILHGNVRVNGVKIKHPSYTLKPGDMFSVK 153 >UniRef50_O60063 Putative 40S ribosomal protein S4-like n=2 Tax=Schizosaccharomyces RepID=YBB1_SCHPO Length = 327 Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 36/58 (62%) Query: 92 ALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKA 149 A LE RLD ++R F ++ +ARQLV H + VNG+ A Q+ P D+V++ +K+ Sbjct: 92 AFLESRLDMSIHRALFASSALQARQLVLHGKVHVNGKPERRAYRQLLPGDLVTVDQKS 149 >UniRef50_B6HQM4 Pc22g11690 protein n=15 Tax=Eurotiomycetidae RepID=B6HQM4_PENCW Length = 457 Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 33/55 (60%) Query: 91 LALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSI 145 A LE RLD ++R F ++ +ARQ V H A+ VNG+ + SY ++P D+ + Sbjct: 118 FAPLERRLDVAIFRALFASSARQARQFVIHGAVTVNGQKMKHPSYLLNPGDLFQV 172 >UniRef50_Q2H0I0 Putative uncharacterized protein n=1 Tax=Chaetomium globosum RepID=Q2H0I0_CHAGB Length = 382 Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 6/71 (8%) Query: 81 RLKGNTG------ENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIAS 134 R KGN+ + + A +E RLD ++R F ++ +ARQ V H A+ VNG+ + Sbjct: 34 RNKGNSTNPTPYMQMMFAPMERRLDIAIFRALFASSARQARQFVLHGAVTVNGKKMTYPG 93 Query: 135 YQVSPNDVVSI 145 Y ++P D+ + Sbjct: 94 YLLNPGDMFQV 104 >UniRef50_A7IAH7 30S ribosomal protein S4P n=5 Tax=Methanomicrobiales RepID=RS4_METB6 Length = 185 Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 5/63 (7%) Query: 88 ENLLAL-----LEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDV 142 +N+LAL LE RL +VYR G + +ARQLV+H I + GR V + Y V+ + Sbjct: 95 DNVLALKVPAQLERRLQTLVYRKGLARSPKQARQLVTHGHIAIGGRRVTVPGYLVTRGEE 154 Query: 143 VSI 145 +I Sbjct: 155 TTI 157 >UniRef50_B1L795 30S ribosomal protein S4P n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=RS4_KORCO Length = 166 Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 6/72 (8%) Query: 93 LLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQ 152 LE RL +V+R GF + ARQL++H I VNGR + SY +V I E+ K + Sbjct: 99 FLERRLQTIVWRKGFAKSPYMARQLITHGHIRVNGRRIRQPSY------LVKIEEEDKIE 152 Query: 153 SRVKAALELAEQ 164 + LE+ ++ Sbjct: 153 CLHPSCLEVEKE 164 >UniRef50_Q0W1V5 30S ribosomal protein S4P n=1 Tax=uncultured methanogenic archaeon RC-I RepID=RS4_UNCMA Length = 205 Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 2/70 (2%) Query: 77 KEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQ 136 KE A+L+ + ++E RL ++YR GF + +ARQ + H I +NGR + + Y Sbjct: 91 KEDAKLEDVLALKVDDIMERRLQTIIYRKGFANSIKQARQFIVHGHISLNGRKITVPGYL 150 Query: 137 V--SPNDVVS 144 V S D++S Sbjct: 151 VLKSEEDMLS 160 >UniRef50_C5DZN7 ZYRO0G05918p n=1 Tax=Zygosaccharomyces rouxii RepID=C5DZN7_ZYGRO Length = 479 Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 16/112 (14%) Query: 51 YGVQLREKQKVRRIYG--VLERQFRNYYKEA--------ARLKGNTGE------NLLALL 94 Y + KQ+ R +G + E++++ ++ A LKG E A+L Sbjct: 42 YQQKWTAKQETRAYHGEHLTEKRWQFFFNPKLDSVAQLDASLKGGKEEETPFLLQTFAVL 101 Query: 95 EGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIR 146 E RLD V+R F ++ +ARQ + + VNG + +Y + P DV +R Sbjct: 102 EKRLDFAVFRAMFASSVRQARQFILQGNVFVNGIKIAHPNYTLKPGDVFRVR 153 >UniRef50_C0NY83 NAM9+ protein n=3 Tax=Onygenales RepID=C0NY83_AJECG Length = 490 Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 32/55 (58%) Query: 91 LALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSI 145 A LE RLD ++R F ++ +ARQ V H ++ VNG+ + Y ++P D+ + Sbjct: 120 FAPLERRLDVAIFRAMFASSTRQARQFVIHGSVTVNGKKMRYPGYLLNPGDLFQV 174 >UniRef50_D1B2S0 Hemolysin A n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B2S0_SULD5 Length = 238 Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 2/65 (3%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVK 156 RLDN V+ GF +R +A +L+ ++ VNG V +S++V ND V + + ++ SR Sbjct: 2 RLDNYVFEKGFAQSRNKASELIKEGSVWVNGNVERKSSFEVCENDKVDVEKISQYVSR-- 59 Query: 157 AALEL 161 A L+L Sbjct: 60 AGLKL 64 >UniRef50_Q74NF7 30S ribosomal protein S4P n=4 Tax=Archaea RepID=RS4_NANEQ Length = 180 Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 27/45 (60%) Query: 93 LLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQV 137 +LE RL ++ R G T +ARQ + H IMVNG VV+ SY V Sbjct: 99 VLERRLQTMLVRKGLAKTMKQARQFIVHGHIMVNGEVVDAPSYLV 143 >UniRef50_Q8W9R0 Ribosomal protein S4 n=1 Tax=Mesostigma viride RepID=Q8W9R0_MESVI Length = 270 Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 64/134 (47%), Gaps = 12/134 (8%) Query: 20 FLKSGVRAIDTKCKIEQAPGQHGARKPR-------LSDYGVQLREKQKVRRIYGVLE-RQ 71 FL V+A K K E Q+ +K R LS +G +L+ K+ + IYG L Q Sbjct: 7 FLLKHVKASKLKNK-ELIFFQNSIKKRRKNQLKRPLSSFGKRLQTKKALEAIYGKLSIPQ 65 Query: 72 FRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVN 131 ++N + + K + LE RLD V+ + F ++ ARQ + H+ I VN ++V Sbjct: 66 WKNIISKKNKPKVTS---FFLNLERRLDRVICQARFASSSNMARQWILHEKIFVNNQLVT 122 Query: 132 IASYQVSPNDVVSI 145 + D++S+ Sbjct: 123 YPGTILKNGDIISL 136 >UniRef50_Q6CF39 YALI0B10494p n=1 Tax=Yarrowia lipolytica RepID=Q6CF39_YARLI Length = 571 Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 34/66 (51%) Query: 81 RLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPN 140 +LK LE RLD V+R F A+ +A Q + + VNG + ASY + P Sbjct: 108 KLKTPFAMQTFVHLEKRLDFAVFRSMFAASIRQAGQFIRQGNVTVNGVKIKHASYTLKPG 167 Query: 141 DVVSIR 146 D++S++ Sbjct: 168 DLISVK 173 >UniRef50_A7F6V8 Putative uncharacterized protein n=2 Tax=Sclerotiniaceae RepID=A7F6V8_SCLS1 Length = 425 Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 32/56 (57%) Query: 90 LLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSI 145 + A +E RLD ++R F ++ +ARQ V H + VNG+ + Y ++P D+ + Sbjct: 119 VYAPIERRLDTAIFRALFASSTRQARQFVVHGKVKVNGKKMPYPGYLLNPGDMFQV 174 >UniRef50_D1Z0V6 30S ribosomal protein S4P n=1 Tax=Methanocella paludicola SANAE RepID=D1Z0V6_METPS Length = 208 Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 7/64 (10%) Query: 88 ENLLAL-----LEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQV--SPN 140 E++LAL LE +L +V+R G+ + +ARQ + H + +NGR + + SY V + Sbjct: 97 EDILALKVEDLLERQLQTIVFRKGYANSMKQARQFIVHGHVSLNGRKITVPSYMVLKAEE 156 Query: 141 DVVS 144 D +S Sbjct: 157 DTIS 160 >UniRef50_A0SNY6 Ribosomal protein S4 n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=A0SNY6_9EURY Length = 187 Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 29/47 (61%) Query: 92 ALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVS 138 A LE RL VV++ G T +ARQL++H I VN + V+I Y V+ Sbjct: 97 AFLERRLQTVVFKKGLARTIKQARQLITHGFIAVNMKRVSIPGYMVT 143 >UniRef50_C3N052 30S ribosomal protein S4P n=29 Tax=Archaea RepID=RS4_SULIA Length = 181 Score = 42.4 bits (98), Expect = 0.009, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 29/49 (59%) Query: 93 LLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPND 141 LLE RL +VY+ G T +ARQL+ H I VNG+ V Y V+ ++ Sbjct: 101 LLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDE 149 >UniRef50_B2W5M8 Putative uncharacterized protein n=2 Tax=Pleosporineae RepID=B2W5M8_PYRTR Length = 426 Score = 42.4 bits (98), Expect = 0.009, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 30/52 (57%) Query: 94 LEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSI 145 LE RLD ++R F ++ +ARQ V H + VNG+ + Y ++P D+ + Sbjct: 122 LERRLDTAIFRALFASSVRQARQFVVHGLVKVNGKKMIYPGYALNPGDMFQV 173 >UniRef50_B2B283 Predicted CDS Pa_6_5850 n=1 Tax=Podospora anserina RepID=B2B283_PODAN Length = 449 Score = 42.4 bits (98), Expect = 0.010, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%) Query: 91 LALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSI 145 A E RLD V+R F ++ +ARQ V H A+ VNG+ + Y ++P D+ + Sbjct: 131 FAPQERRLDISVFRALFASSARQARQFVIHGAVKVNGKKMQHPGYLLNPGDLFQV 185 >UniRef50_A4WM27 30S ribosomal protein S4P n=5 Tax=Thermoproteaceae RepID=RS4_PYRAR Length = 159 Score = 42.0 bits (97), Expect = 0.012, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 26/47 (55%) Query: 92 ALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVS 138 A+LE RL +VYRMG + ARQL+ H I + GR V + V Sbjct: 102 AILERRLQTIVYRMGLAKSIYHARQLIVHGHIAIEGRRVTSPGFLVP 148 >UniRef50_Q18G54 30S ribosomal protein S4P n=9 Tax=Halobacteriaceae RepID=RS4_HALWD Length = 175 Score = 42.0 bits (97), Expect = 0.013, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 32/59 (54%) Query: 87 GENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSI 145 G ++ +LE RL +VYR G +T +ARQ + H+ I VNG V S V + +I Sbjct: 96 GLDVSDILERRLQTIVYRQGLASTPKQARQFIVHEHITVNGARVTRPSKMVEETEANAI 154 >UniRef50_C5JVX1 30S ribosomal subunit S4 n=4 Tax=Onygenales RepID=C5JVX1_AJEDS Length = 498 Score = 41.6 bits (96), Expect = 0.015, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 30/55 (54%) Query: 91 LALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSI 145 A LE RLD ++R F ++ +ARQ V H + VNG + Y ++P D+ + Sbjct: 120 FAPLERRLDVAIFRAMFASSTRQARQFVVHGFVTVNGTKMRHPGYLLNPGDLFQV 174 >UniRef50_Q46GC8 30S ribosomal protein S4P n=3 Tax=Methanosarcina RepID=RS4_METBF Length = 216 Score = 41.2 bits (95), Expect = 0.021, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 28/53 (52%) Query: 93 LLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSI 145 +LE RL V R+G T +ARQ ++H I +NGR + VS D + I Sbjct: 108 ILERRLQTQVLRLGLARTVVQARQFITHGHIAINGRKATVPGMLVSKEDEMHI 160 >UniRef50_B8PNL6 Predicted protein n=2 Tax=Agaricomycetes RepID=B8PNL6_POSPM Length = 345 Score = 40.8 bits (94), Expect = 0.025, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 7/89 (7%) Query: 77 KEAARLK-------GNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRV 129 KEA RL+ G + +E R+D +++R F + EAR++V H +++NG+ Sbjct: 109 KEAKRLQNEREKGLAPVGSLMFREVERRIDVLLFRACFAHSVYEARRMVVHGDVLLNGKK 168 Query: 130 VNIASYQVSPNDVVSIREKAKKQSRVKAA 158 + +++P D+ S+ KA + + AA Sbjct: 169 HTNPNTRLAPGDMFSVDPKAIRFLQANAA 197 >UniRef50_A6QVF5 Putative uncharacterized protein n=2 Tax=Onygenales RepID=A6QVF5_AJECN Length = 453 Score = 40.4 bits (93), Expect = 0.034, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 31/55 (56%) Query: 91 LALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSI 145 A LE RLD ++R F ++ +ARQ V H ++ VNG+ + Y ++ D+ + Sbjct: 159 FAPLERRLDVAIFRAMFASSTRQARQFVIHGSVTVNGKKMRYPGYLLNSGDLFQV 213 >UniRef50_A8MDS5 30S ribosomal protein S4P n=6 Tax=Thermoprotei RepID=RS4_CALMQ Length = 181 Score = 40.0 bits (92), Expect = 0.055, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 29/52 (55%) Query: 89 NLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPN 140 ++ A+LE RL +VYR G + EARQL+ H I +NG V Y V N Sbjct: 99 DVTAVLERRLQTLVYRKGMARSIHEARQLIVHGHISINGVRVRSPGYLVPRN 150 >UniRef50_Q5KLM6 Nam9 protein, mitochondrial, putative n=2 Tax=Filobasidiella neoformans RepID=Q5KLM6_CRYNE Length = 317 Score = 39.3 bits (90), Expect = 0.087, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 34/63 (53%) Query: 83 KGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDV 142 + G L A +E RLD +++R F EAR+ V + +NG+V+ + ++P DV Sbjct: 129 RAPVGTMLFADIERRLDVLIFRSCFAQNVWEARRYVVQGHVKLNGQVMRNPNIMLNPGDV 188 Query: 143 VSI 145 ++ Sbjct: 189 FTV 191 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_B5EFS6 30S ribosomal protein S4 n=51 Tax=Bacteria RepID... 267 2e-70 UniRef50_B9L6T8 30S ribosomal protein S4 n=447 Tax=cellular orga... 267 2e-70 UniRef50_Q3M534 30S ribosomal protein S4 n=946 Tax=cellular orga... 260 3e-68 UniRef50_A0PXX4 30S ribosomal protein S4 A n=36 Tax=Bacteria Rep... 258 9e-68 UniRef50_Q3APJ9 30S ribosomal protein S4 n=12 Tax=Bacteroidetes/... 257 2e-67 UniRef50_B0VI05 30S ribosomal subunit protein S4 n=6 Tax=Bacteri... 256 4e-67 UniRef50_B1X067 30S ribosomal protein S4 n=18 Tax=cellular organ... 255 6e-67 UniRef50_Q4FUD2 30S ribosomal protein S4 n=313 Tax=cellular orga... 253 2e-66 UniRef50_B9KZW1 30S ribosomal protein S4 n=56 Tax=Bacteria RepID... 250 1e-65 UniRef50_A9B436 30S ribosomal protein S4 n=3 Tax=Bacteria RepID=... 250 2e-65 UniRef50_Q2JUD6 30S ribosomal protein S4 n=92 Tax=cellular organ... 250 3e-65 UniRef50_A5GRL5 30S ribosomal protein S4 n=52 Tax=cellular organ... 249 4e-65 UniRef50_A0M574 30S ribosomal protein S4 n=23 Tax=Bacteria RepID... 248 7e-65 UniRef50_B8HXV1 30S ribosomal protein S4 n=431 Tax=cellular orga... 248 8e-65 UniRef50_B5Y961 Ribosomal protein S4 n=1 Tax=Coprothermobacter p... 244 1e-63 UniRef50_Q01WB9 30S ribosomal protein S4 n=301 Tax=Bacteria RepI... 242 7e-63 UniRef50_P56799 30S ribosomal protein S4, chloroplastic n=803 Ta... 242 7e-63 UniRef50_Q1WT66 30S ribosomal protein S4 n=12 Tax=Bacteria RepID... 241 1e-62 UniRef50_Q0ZJ18 30S ribosomal protein S4, chloroplastic n=973 Ta... 240 2e-62 UniRef50_Q2JFE9 30S ribosomal protein S4 n=124 Tax=Bacteria RepI... 239 3e-62 UniRef50_A4WUP0 30S ribosomal protein S4 n=66 Tax=Bacteria RepID... 236 4e-61 UniRef50_A9MAK7 30S ribosomal protein S4 n=56 Tax=Alphaproteobac... 236 4e-61 UniRef50_C9M7W9 Ribosomal protein S4 n=2 Tax=Synergistaceae RepI... 234 2e-60 UniRef50_D1C704 Ribosomal protein S4 n=2 Tax=Bacteria RepID=D1C7... 233 2e-60 UniRef50_Q1ACM7 30S ribosomal protein S4, chloroplastic n=1359 T... 233 2e-60 UniRef50_C6PD21 RNA-binding S4 domain protein n=1 Tax=Thermoanae... 233 3e-60 UniRef50_A9BFZ1 30S ribosomal protein S4 n=32 Tax=Bacteria RepID... 233 3e-60 UniRef50_Q1CXF1 30S ribosomal protein S4 B n=2 Tax=Cystobacterin... 231 1e-59 UniRef50_C9KPD3 Ribosomal protein S4 n=1 Tax=Mitsuokella multaci... 230 3e-59 UniRef50_Q1H2K1 30S ribosomal protein S4 n=6 Tax=Proteobacteria ... 229 6e-59 UniRef50_D0JAU4 30S ribosomal protein S4 n=1 Tax=Blattabacterium... 228 1e-58 UniRef50_A0T0H2 30S ribosomal protein S4, chloroplastic n=4 Tax=... 227 2e-58 UniRef50_B7T1T6 Ribosomal protein S4 n=1 Tax=Vaucheria litorea R... 225 5e-58 UniRef50_C1ABG6 30S ribosomal protein S4 n=1 Tax=Gemmatimonas au... 225 6e-58 UniRef50_Q2SSN9 30S ribosomal protein S4 n=25 Tax=Mycoplasmatace... 223 3e-57 UniRef50_Q3KL69 30S ribosomal protein S4 n=17 Tax=Chlamydiales R... 221 1e-56 UniRef50_UPI00016B2693 ribosomal protein S4 n=1 Tax=candidate di... 220 2e-56 UniRef50_C3PN57 30S ribosomal protein S4 n=41 Tax=cellular organ... 220 2e-56 UniRef50_Q47R66 30S ribosomal protein S4 n=2 Tax=Nocardiopsaceae... 219 4e-56 UniRef50_D2BEX9 30S ribosomal protein S4 n=1 Tax=Streptosporangi... 219 6e-56 UniRef50_D1J7L7 30S ribosomal protein S4 n=2 Tax=Mycoplasma RepI... 217 1e-55 UniRef50_C9RJV5 Ribosomal protein S4 n=1 Tax=Fibrobacter succino... 217 3e-55 UniRef50_C1TPK7 SSU ribosomal protein S4P n=1 Tax=Dethiosulfovib... 216 3e-55 UniRef50_B7J2H5 30S ribosomal protein S4 n=21 Tax=Borrelia RepID... 216 4e-55 UniRef50_A9KJG7 30S ribosomal protein S4 n=79 Tax=Bacteria RepID... 214 1e-54 UniRef50_D1R5K6 Putative uncharacterized protein n=1 Tax=Parachl... 211 1e-53 UniRef50_Q7UXM6 30S ribosomal protein S4 n=6 Tax=Planctomycetace... 211 1e-53 UniRef50_A5KQD5 Putative uncharacterized protein n=3 Tax=Ruminoc... 209 5e-53 UniRef50_A5CCV1 30S ribosomal protein S4 n=58 Tax=Bacteria RepID... 206 3e-52 UniRef50_A6TSI5 30S ribosomal protein S4 B n=42 Tax=Clostridiale... 206 4e-52 UniRef50_O22020 30S ribosomal protein S4, chloroplastic n=1 Tax=... 203 2e-51 UniRef50_B2S2Q4 30S ribosomal protein S4 n=4 Tax=Treponema RepID... 203 2e-51 UniRef50_C6UNA0 30S ribosomal subunit protein S4 n=1 Tax=Candida... 203 3e-51 UniRef50_C7LKJ2 30S ribosomal subunit protein S4 n=1 Tax=Candida... 199 4e-50 UniRef50_A5CRZ7 30S ribosomal protein S4 n=75 Tax=Actinobacteria... 199 4e-50 UniRef50_D1N636 Ribosomal protein S4 n=1 Tax=Victivallis vadensi... 196 4e-49 UniRef50_Q06J34 30S ribosomal protein S4, chloroplastic n=1 Tax=... 195 9e-49 UniRef50_P58134 Plastid 30S ribosomal protein S4 n=1 Tax=Euglena... 195 1e-48 UniRef50_UPI00016C3E34 30S ribosomal protein S4 n=1 Tax=Gemmata ... 191 8e-48 UniRef50_Q6MIP0 30S ribosomal protein S4 B n=1 Tax=Bdellovibrio ... 191 2e-47 UniRef50_Q8WL66 Ribosomal protein small subunit 4 (Fragment) n=1... 190 2e-47 UniRef50_Q2GDI3 30S ribosomal protein S4 n=3 Tax=Anaplasmataceae... 183 4e-45 UniRef50_Q06SJ3 30S ribosomal protein S4, chloroplastic n=2 Tax=... 181 1e-44 UniRef50_Q85XL2 Small ribosomal protein 4 (Fragment) n=2 Tax=Emb... 180 2e-44 UniRef50_B2X261 Ribosomal protein S4 (Fragment) n=1 Tax=Floydiel... 178 1e-43 UniRef50_C6B8C6 RNA-binding S4 domain protein n=1 Tax=Rhizobium ... 177 2e-43 UniRef50_B2X1Z7 Ribosomal protein S4 n=1 Tax=Oedogonium cardiacu... 176 6e-43 UniRef50_P48270 30S ribosomal protein S4, chloroplastic n=6 Tax=... 175 1e-42 UniRef50_Q5C773 SJCHGC09636 protein (Fragment) n=1 Tax=Schistoso... 171 1e-41 UniRef50_Q00NZ9 Rps4 (Fragment) n=5 Tax=Embryophyta RepID=Q00NZ9... 163 2e-39 UniRef50_C1IXJ0 Ribosomal protein S4 n=1 Tax=Picea sitchensis Re... 163 4e-39 UniRef50_D0PPV5 Small ribosomal protein 4 (Fragment) n=1 Tax=Aus... 161 2e-38 UniRef50_O21263 Ribosomal protein S4, mitochondrial n=1 Tax=Recl... 160 2e-38 UniRef50_Q2WGC2 Ribosomal protein S4 (Fragment) n=2 Tax=Selagine... 159 5e-38 UniRef50_Q6VQL8 Rps4 n=1 Tax=Psammisia dolichopoda RepID=Q6VQL8_... 150 3e-35 UniRef50_Q2EEX1 Plastid 30S ribosomal protein S4 n=1 Tax=Helicos... 149 4e-35 UniRef50_Q0P3J0 Mitochondrion, complete genome n=1 Tax=Ostreococ... 143 3e-33 UniRef50_Q9G884 Ribosomal protein S4 n=1 Tax=Malawimonas jakobif... 138 9e-32 UniRef50_P26866 Ribosomal protein S4, mitochondrial n=4 Tax=Stre... 137 3e-31 UniRef50_Q05FK4 30S ribosomal protein S4 n=1 Tax=Candidatus Cars... 136 4e-31 UniRef50_C1KRH3 Ribosomal protein S4 n=1 Tax=Micromonas sp. RCC2... 130 3e-29 UniRef50_Q9TCC4 Ribosomal protein S4 n=1 Tax=Nephroselmis olivac... 126 6e-28 UniRef50_B2MWU8 Ribosomal protein S4 n=1 Tax=Hemiselmis andersen... 124 2e-27 UniRef50_Q9G8X0 Ribosomal protein S4 n=1 Tax=Rhodomonas salina R... 115 8e-25 UniRef50_Q7YN81 Apicoplast 30S ribosomal protein S4 n=1 Tax=Eime... 114 1e-24 UniRef50_UPI000196B648 hypothetical protein CATMIT_01694 n=1 Tax... 112 7e-24 UniRef50_A6YEB5 Ribosomal protein S4 n=1 Tax=Chlorokybus atmophy... 110 3e-23 UniRef50_Q9F8G5 Ribosomal protein S4 (Fragment) n=1 Tax=Carboxyd... 109 4e-23 UniRef50_Q9XQQ7 Apicoplast 30S ribosomal protein S4 n=1 Tax=Toxo... 107 2e-22 UniRef50_C6FG20 Ribosomal protein S4 n=2 Tax=Isoetes engelmannii... 106 4e-22 UniRef50_Q0YR48 30S ribosomal protein S4 n=1 Tax=Chlorobium ferr... 104 2e-21 UniRef50_P27929 37S ribosomal protein NAM9, mitochondrial n=13 T... 101 2e-20 UniRef50_C1KRA9 Ribosomal protein S4 n=1 Tax=Micromonas pusilla ... 100 2e-20 UniRef50_Q6E781 Ribosomal protein S4 n=1 Tax=Saprolegnia ferax R... 100 4e-20 UniRef50_D2JP76 Ribosomal protein S4 n=1 Tax=Synedra acus RepID=... 98 1e-19 UniRef50_P46743 Ribosomal protein S4, mitochondrial n=1 Tax=Prot... 98 2e-19 UniRef50_Q2TUD0 Ribosomal protein S4 n=1 Tax=Dictyota dichotoma ... 96 5e-19 UniRef50_C5DZN7 ZYRO0G05918p n=1 Tax=Zygosaccharomyces rouxii Re... 95 1e-18 UniRef50_UPI000169316E RpsD n=1 Tax=Paenibacillus larvae subsp. ... 93 5e-18 UniRef50_B2XX60 Ribosomal protein S4 n=2 Tax=Polysphondylium pal... 93 6e-18 UniRef50_P0C5Y3 Ribosomal protein S4, mitochondrial n=3 Tax=Dict... 93 8e-18 UniRef50_C4R204 Mitochondrial ribosomal component of the small s... 92 1e-17 UniRef50_Q2TUL0 Ribosomal protein S4 n=11 Tax=Phaeophyceae RepID... 91 2e-17 UniRef50_Q3S297 Ribosomal protein S4 n=1 Tax=Thalassiosira pseud... 91 2e-17 UniRef50_C0NY83 NAM9+ protein n=3 Tax=Onygenales RepID=C0NY83_AJECG 91 3e-17 UniRef50_B2XXA8 Ribosomal protein S4 n=1 Tax=Dictyostelium fasci... 90 3e-17 UniRef50_P46755 Ribosomal protein S4, mitochondrial n=1 Tax=Acan... 89 1e-16 UniRef50_Q9T225 Ribosomal protein S4 n=3 Tax=Phytophthora RepID=... 88 2e-16 UniRef50_Q0YR49 Ribosomal protein S4 n=1 Tax=Chlorobium ferrooxi... 85 2e-15 UniRef50_Q2H0I0 Putative uncharacterized protein n=1 Tax=Chaetom... 84 2e-15 UniRef50_B6HQM4 Pc22g11690 protein n=15 Tax=Eurotiomycetidae Rep... 84 2e-15 UniRef50_C7ZPJ0 Putative uncharacterized protein n=2 Tax=Nectria... 84 3e-15 UniRef50_O60063 Putative 40S ribosomal protein S4-like n=2 Tax=S... 82 1e-14 UniRef50_Q31708 Ribosomal protein S4, mitochondrial n=44 Tax=Mag... 79 8e-14 UniRef50_Q0W1V5 30S ribosomal protein S4P n=1 Tax=uncultured met... 76 9e-13 UniRef50_B1L795 30S ribosomal protein S4P n=1 Tax=Candidatus Kor... 76 1e-12 UniRef50_A7IAH7 30S ribosomal protein S4P n=5 Tax=Methanomicrobi... 73 7e-12 UniRef50_UPI0001699071 30S ribosomal protein S4 n=1 Tax=Endorift... 73 8e-12 UniRef50_D1B2S0 Hemolysin A n=1 Tax=Sulfurospirillum deleyianum ... 58 2e-07 Sequences not found previously or not previously below threshold: UniRef50_Q8M1G7 Ribosomal protein S4 n=1 Tax=Chaetosphaeridium g... 96 5e-19 UniRef50_C5JVX1 30S ribosomal subunit S4 n=4 Tax=Onygenales RepI... 90 7e-17 UniRef50_A6QVF5 Putative uncharacterized protein n=2 Tax=Onygena... 88 1e-16 UniRef50_Q09MH6 Ribosomal protein S4 n=10 Tax=Citrus RepID=Q09MH... 82 1e-14 UniRef50_B2W5M8 Putative uncharacterized protein n=2 Tax=Pleospo... 81 2e-14 UniRef50_Q8W9R0 Ribosomal protein S4 n=1 Tax=Mesostigma viride R... 79 6e-14 UniRef50_Q6CF39 YALI0B10494p n=1 Tax=Yarrowia lipolytica RepID=Q... 79 1e-13 UniRef50_B2B283 Predicted CDS Pa_6_5850 n=1 Tax=Podospora anseri... 78 1e-13 UniRef50_A7F6V8 Putative uncharacterized protein n=2 Tax=Sclerot... 77 3e-13 UniRef50_B9WLL6 Mitochondrial ribosome protein, small subunit n=... 77 4e-13 UniRef50_B8PNL6 Predicted protein n=2 Tax=Agaricomycetes RepID=B... 73 5e-12 UniRef50_C3N052 30S ribosomal protein S4P n=29 Tax=Archaea RepID... 72 1e-11 UniRef50_Q7SA90 Predicted protein n=3 Tax=Fungi/Metazoa group Re... 72 1e-11 UniRef50_Q46GC8 30S ribosomal protein S4P n=3 Tax=Methanosarcina... 72 1e-11 UniRef50_D1Z0V6 30S ribosomal protein S4P n=1 Tax=Methanocella p... 71 2e-11 UniRef50_Q74NF7 30S ribosomal protein S4P n=4 Tax=Archaea RepID=... 70 4e-11 UniRef50_Q18G54 30S ribosomal protein S4P n=9 Tax=Halobacteriace... 69 8e-11 UniRef50_A0SNY6 Ribosomal protein S4 n=1 Tax=Candidatus Micrarch... 69 1e-10 UniRef50_A8Q6S4 Putative uncharacterized protein n=1 Tax=Malasse... 68 1e-10 UniRef50_A8MDS5 30S ribosomal protein S4P n=6 Tax=Thermoprotei R... 68 2e-10 UniRef50_Q12ZR5 30S ribosomal protein S4P n=2 Tax=Methanosarcina... 68 2e-10 UniRef50_Q5KLM6 Nam9 protein, mitochondrial, putative n=2 Tax=Fi... 67 3e-10 UniRef50_A4WM27 30S ribosomal protein S4P n=5 Tax=Thermoproteace... 66 6e-10 UniRef50_Q4P4E5 Putative uncharacterized protein n=1 Tax=Ustilag... 65 1e-09 UniRef50_B6YSQ1 30S ribosomal protein S4P n=12 Tax=Euryarchaeota... 64 2e-09 UniRef50_A4YIN4 30S ribosomal protein S4P n=3 Tax=Thermoprotei R... 62 2e-08 UniRef50_D2EFK3 Ribosomal protein S4 n=1 Tax=Candidatus Parvarch... 61 2e-08 UniRef50_Q4MYC2 Ribosomal protein S4, putative n=1 Tax=Theileria... 59 1e-07 UniRef50_B5SQ81 Putative ribosomal protein S4 (Fragment) n=1 Tax... 56 5e-07 UniRef50_A4RKE3 Putative uncharacterized protein n=1 Tax=Magnapo... 56 6e-07 UniRef50_A9A436 30S ribosomal protein S4P n=4 Tax=Thaumarchaeota... 56 6e-07 UniRef50_Q2NFZ4 30S ribosomal protein S4P n=5 Tax=Methanobacteri... 55 2e-06 UniRef50_B0BLG9 Ribosomal protein S4 n=1 Tax=Cycas taitungensis ... 55 2e-06 UniRef50_Q6UVU2 Ribosomal protein S4 n=1 Tax=Pseudendoclonium ak... 54 3e-06 UniRef50_P52810 40S ribosomal protein S9 n=99 Tax=Eukaryota RepI... 54 3e-06 UniRef50_B5SQ56 Putative ribosomal protein S4 (Fragment) n=1 Tax... 53 5e-06 UniRef50_A7AXH2 Putative uncharacterized protein n=1 Tax=Babesia... 52 2e-05 UniRef50_C8S933 RNA-binding S4 domain protein n=2 Tax=Archaeoglo... 52 2e-05 UniRef50_Q9TAI3 Ribosomal protein S4 n=1 Tax=Cafeteria roenberge... 51 2e-05 UniRef50_O15612 40S ribosomal protein S9 n=4 Tax=Entamoeba RepID... 51 2e-05 UniRef50_P46781 40S ribosomal protein S9 n=236 Tax=Eukaryota Rep... 51 2e-05 UniRef50_Q8TYA5 Predicted RNA-binding protein containing the S4 ... 51 3e-05 UniRef50_B7GTM9 Hemolysin A n=18 Tax=Bifidobacteriaceae RepID=B7... 51 3e-05 UniRef50_A8F528 Hemolysin A n=1 Tax=Thermotoga lettingae TMO Rep... 50 4e-05 UniRef50_Q2N6H3 S4 domain protein n=1 Tax=Erythrobacter litorali... 50 6e-05 UniRef50_A3TX18 S4 domain protein n=4 Tax=Rhodobacteraceae RepID... 49 8e-05 UniRef50_B3T3X2 Putative S4 domain protein n=2 Tax=prokaryotic e... 49 1e-04 UniRef50_A0B9H7 RNA-binding S4 domain protein n=1 Tax=Methanosae... 48 1e-04 UniRef50_A5P9N3 S4 domain protein n=1 Tax=Erythrobacter sp. SD-2... 48 2e-04 UniRef50_B2USJ4 Hemolysin n=12 Tax=Helicobacter pylori RepID=B2U... 48 2e-04 UniRef50_A5VJ39 RNA-binding S4 domain protein n=13 Tax=Lactobaci... 48 2e-04 UniRef50_Q3LWD1 Ribosomal protein S9 n=1 Tax=Bigelowiella natans... 48 3e-04 UniRef50_C7R3S3 Hemolysin A n=1 Tax=Jonesia denitrificans DSM 20... 47 3e-04 UniRef50_A3VSN6 Hemolysin HlyA n=1 Tax=Parvularcula bermudensis ... 47 5e-04 UniRef50_B1GZX8 Putative rRNA methylase n=1 Tax=uncultured Termi... 46 7e-04 UniRef50_C9M7F5 Hemolysin A n=1 Tax=Jonquetella anthropi E3_33 E... 46 8e-04 UniRef50_A8AW22 S4 domain n=3 Tax=Streptococcus RepID=A8AW22_STRGC 46 9e-04 UniRef50_D0MJ49 Pseudouridine synthase n=2 Tax=Bacteria RepID=D0... 46 0.001 UniRef50_C7N702 Hemolysin A n=1 Tax=Slackia heliotrinireducens D... 45 0.001 UniRef50_A6UE60 RNA-binding S4 domain protein n=12 Tax=Rhizobial... 45 0.002 UniRef50_B0XDY0 U3 small nucleolar ribonucleoprotein protein IMP... 45 0.002 UniRef50_D2RHD3 RNA-binding S4 domain protein n=1 Tax=Archaeoglo... 45 0.002 UniRef50_Q2GC52 RNA-binding S4 n=3 Tax=Sphingomonadaceae RepID=Q... 44 0.002 UniRef50_Q11YT0 Pseudouridine synthase n=9 Tax=Bacteroidetes Rep... 44 0.002 UniRef50_Q85X15 ORF76a n=1 Tax=Pinus koraiensis RepID=Q85X15_PINKO 44 0.003 UniRef50_C7GEB1 Putative S4 domain protein n=2 Tax=Roseburia Rep... 44 0.003 UniRef50_Q7UUI8 Pseudouridine synthase n=1 Tax=Rhodopirellula ba... 44 0.003 UniRef50_UPI0001C41E03 rRNA methylase n=1 Tax=Methanobrevibacter... 44 0.003 UniRef50_A4XKR0 RNA-binding S4 domain protein n=2 Tax=Clostridia... 44 0.004 UniRef50_C5RAG0 Ribosomal protein S4e n=1 Tax=Weissella paramese... 44 0.004 UniRef50_D2QMI8 RNA-binding S4 domain protein n=16 Tax=Bacteroid... 44 0.004 UniRef50_B9JSK8 Hemolysin A n=20 Tax=Alphaproteobacteria RepID=B... 44 0.004 UniRef50_A5INM9 Pseudouridine synthase n=7 Tax=Thermotogaceae Re... 44 0.004 UniRef50_Q6MUD3 Hemolysin A n=1 Tax=Mycoplasma mycoides subsp. m... 43 0.005 UniRef50_Q7M9Y6 PUTATIVE HEMOLYSIN n=1 Tax=Wolinella succinogene... 43 0.006 UniRef50_Q8IKM0 Mitochondrial ribosomal protein S4/S9, putative ... 43 0.006 UniRef50_Q28M35 RNA-binding S4 n=1 Tax=Jannaschia sp. CCS1 RepID... 43 0.007 UniRef50_C7MC95 Predicted rRNA methylase n=1 Tax=Brachybacterium... 43 0.007 UniRef50_Q1GPH7 RNA-binding S4 n=1 Tax=Sphingopyxis alaskensis R... 43 0.008 UniRef50_B7CAM4 Putative uncharacterized protein n=1 Tax=Eubacte... 43 0.008 UniRef50_Q2ST62 Hemolysin A n=3 Tax=Mollicutes RepID=Q2ST62_MYCCT 43 0.008 UniRef50_Q03W41 Cell division protein, S4-like domain n=3 Tax=Le... 43 0.008 UniRef50_Q466Z9 FtsJ-like methyltransferase n=6 Tax=Euryarchaeot... 43 0.009 UniRef50_B6AQT2 Hemolysin A n=2 Tax=Leptospirillum sp. Group II ... 43 0.010 UniRef50_UPI0001BC329C RNA-binding S4 domain-containing protein ... 42 0.010 UniRef50_B9KC52 Pseudouridine synthase n=1 Tax=Thermotoga neapol... 42 0.010 UniRef50_Q0AX41 Pseudouridine synthase n=1 Tax=Syntrophomonas wo... 42 0.011 UniRef50_B8DBQ5 S4 domain protein n=14 Tax=Listeria RepID=B8DBQ5... 42 0.011 UniRef50_B9K8Q2 Hemolysin A n=1 Tax=Thermotoga neapolitana DSM 4... 42 0.012 UniRef50_C6QEU6 RNA-binding S4 domain protein n=1 Tax=Hyphomicro... 42 0.014 UniRef50_Q06803 Hemolysin A n=3 Tax=Brachyspira RepID=HLYA_TREHY 42 0.014 UniRef50_A9NGL0 rRNA pseudouridylate synthase n=1 Tax=Acholeplas... 42 0.015 UniRef50_Q8SRU8 U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN n=1 Tax=Enc... 42 0.015 UniRef50_B7XIT4 SSU ribosomal protein S4P n=1 Tax=Enterocytozoon... 41 0.018 UniRef50_C6VXU0 Pseudouridine synthase n=1 Tax=Dyadobacter ferme... 41 0.018 UniRef50_Q0G1N8 RNA-binding S4 n=1 Tax=Fulvimarina pelagi HTCC25... 41 0.019 UniRef50_Q5WFI1 Putative uncharacterized protein n=1 Tax=Bacillu... 41 0.019 UniRef50_C6WCR0 RNA-binding S4 domain protein n=1 Tax=Actinosynn... 41 0.020 UniRef50_D1CG17 Hemolysin A n=1 Tax=Thermobaculum terrenum ATCC ... 41 0.021 UniRef50_Q8T866 Putative uncharacterized protein n=1 Tax=Dictyos... 41 0.022 UniRef50_UPI0001BC42EF hemolysin A n=2 Tax=Fusobacterium RepID=U... 41 0.022 UniRef50_B1CBW0 Putative uncharacterized protein n=1 Tax=Anaerof... 41 0.023 UniRef50_A0LDZ0 RNA-binding S4 domain protein n=2 Tax=Proteobact... 41 0.024 UniRef50_B0MQ24 Putative uncharacterized protein n=1 Tax=Eubacte... 41 0.025 UniRef50_B1I3J7 Hemolysin A n=1 Tax=Candidatus Desulforudis auda... 41 0.025 UniRef50_C3XLQ2 Hemolysin A n=1 Tax=Helicobacter winghamensis AT... 41 0.026 UniRef50_B4U7M2 Hemolysin A n=1 Tax=Hydrogenobaculum sp. Y04AAS1... 41 0.028 UniRef50_A7GRM2 RNA-binding S4 domain protein n=4 Tax=Bacillales... 41 0.030 UniRef50_D1ANU4 Pseudouridine synthase n=14 Tax=Fusobacteriaceae... 41 0.032 UniRef50_Q25804 Rps4 protein n=2 Tax=Plasmodium RepID=Q25804_PLAF7 41 0.034 UniRef50_A6TRY3 RNA-binding S4 domain protein n=1 Tax=Alkaliphil... 41 0.034 UniRef50_C9L5V3 RNA-binding S4 n=8 Tax=Clostridiales RepID=C9L5V... 41 0.034 UniRef50_D0LUB8 Hemolysin A n=1 Tax=Haliangium ochraceum DSM 143... 41 0.036 UniRef50_A5G345 RNA-binding S4 domain protein n=2 Tax=Acetobacte... 41 0.037 UniRef50_A3WG15 Putative heat shock protein 15 (HSP15) n=1 Tax=E... 41 0.037 UniRef50_O67638 Uncharacterized RNA pseudouridine synthase aq_17... 40 0.040 UniRef50_A7HKW0 Hemolysin A n=1 Tax=Fervidobacterium nodosum Rt1... 40 0.040 UniRef50_UPI0001C37137 ribosomal large subunit pseudouridine syn... 40 0.045 UniRef50_B0S9J1 rRNA methylase/Hemolysin-tylA n=3 Tax=Leptospira... 40 0.046 UniRef50_C5CGS7 Hemolysin A n=1 Tax=Kosmotoga olearia TBF 19.5.1... 40 0.047 UniRef50_P71020 Putative RNA-binding protein ylmH n=3 Tax=Bacill... 40 0.048 UniRef50_B2IVN0 RNA-binding S4 domain protein n=11 Tax=cellular ... 40 0.049 UniRef50_Q9MUH2 Truncated ribosomal protein small subunit 4 (Fra... 40 0.049 UniRef50_UPI000196BAD7 hypothetical protein CATMIT_00510 n=1 Tax... 40 0.051 UniRef50_Q03QI1 Cell division protein, S4-like domain n=1 Tax=La... 40 0.051 UniRef50_B5ZBT3 Ribosomal RNA large subunit methyltransferase J ... 40 0.052 UniRef50_B9LA28 Hemolysin A n=7 Tax=Epsilonproteobacteria RepID=... 40 0.054 UniRef50_Q3SVL4 RNA-binding S4 n=16 Tax=Rhizobiales RepID=Q3SVL4... 40 0.054 UniRef50_A4WST9 RNA-binding S4 domain protein n=5 Tax=Alphaprote... 40 0.055 UniRef50_A5Z689 Putative uncharacterized protein n=1 Tax=Eubacte... 40 0.055 UniRef50_A6WWC5 Hemolysin A n=9 Tax=Bacteria RepID=A6WWC5_OCHA4 40 0.059 >UniRef50_B5EFS6 30S ribosomal protein S4 n=51 Tax=Bacteria RepID=RS4_GEOBB Length = 208 Score = 267 bits (683), Expect = 2e-70, Method: Composition-based stats. Identities = 114/209 (54%), Positives = 143/209 (68%), Gaps = 4/209 (1%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKC---KIEQAPGQHGARKPRLSDYGVQLRE 57 MARY GP +L RREG++LFLK G R KC + PGQHG + ++SDYGVQLRE Sbjct: 1 MARYTGPSCRLCRREGSELFLK-GERCYTDKCAIKRRSYPPGQHGQGRIKVSDYGVQLRE 59 Query: 58 KQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQL 117 KQKVRRIYG+LE QFR Y++ A R+KG TGENLL +LE RLDNV YR+GF +R EARQL Sbjct: 60 KQKVRRIYGILENQFRGYFETADRMKGVTGENLLFILERRLDNVAYRLGFATSRDEARQL 119 Query: 118 VSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGK 177 V H +NG+ VNI S QV DV+ +REK++K + + +LE +R P WLE++ Sbjct: 120 VRHGHFTLNGKKVNIPSLQVKAGDVLQLREKSRKVAAISESLEGVVRRGIPQWLELEKDA 179 Query: 178 MEGTFKRKPERSDLSADINEHLIVELYSK 206 +GT K P R D++ I E LIVELYSK Sbjct: 180 FKGTVKAMPVREDITMPIQEQLIVELYSK 208 >UniRef50_B9L6T8 30S ribosomal protein S4 n=447 Tax=cellular organisms RepID=RS4_NAUPA Length = 208 Score = 267 bits (682), Expect = 2e-70, Method: Composition-based stats. Identities = 111/208 (53%), Positives = 145/208 (69%), Gaps = 2/208 (0%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVR--AIDTKCKIEQAPGQHGARKPRLSDYGVQLREK 58 MARY GP K+ RR G L LK R K APGQHG R+ ++S+YG+QLREK Sbjct: 1 MARYTGPVEKIERRLGVSLELKGERRLAGKSALDKRPYAPGQHGQRRTKISEYGLQLREK 60 Query: 59 QKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 QK++ YGVLE+QFR +++EA R +GNTGENL+ LLE RLDNVVYRMGF +TR ARQLV Sbjct: 61 QKIKFYYGVLEKQFRKFFREANRQEGNTGENLIKLLERRLDNVVYRMGFASTRRFARQLV 120 Query: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 +H I+VNG+ VNI SY V D + IREK+K +++ ALEL++Q W++VD K+ Sbjct: 121 THGHILVNGKKVNIPSYLVKEGDRIEIREKSKNNVQIQRALELSQQTGIAPWVDVDKEKL 180 Query: 179 EGTFKRKPERSDLSADINEHLIVELYSK 206 G F+R PER +++ + E L+VELYSK Sbjct: 181 VGVFQRVPEREEVNIPVEERLVVELYSK 208 >UniRef50_Q3M534 30S ribosomal protein S4 n=946 Tax=cellular organisms RepID=RS4_ANAVT Length = 202 Score = 260 bits (664), Expect = 3e-68, Method: Composition-based stats. Identities = 85/206 (41%), Positives = 121/206 (58%), Gaps = 6/206 (2%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 M+RY GP+L++ RR G L + PGQHG + + S+Y ++L EKQK Sbjct: 1 MSRYRGPRLRIVRRLGDLPGLTRKS------ARRAYPPGQHGQNRKKRSEYAIRLEEKQK 54 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 +R YG+ E+Q Y + A R+ G+TG+ LL LLE RLDN V+R+G T ARQLV+H Sbjct: 55 LRLNYGLTEKQLLRYVRRARRVTGSTGQVLLQLLEMRLDNTVFRLGMAPTIPAARQLVNH 114 Query: 121 KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEG 180 + VNGRVVNIASYQ P + +++R+KA + V+ L+ P+ LE D K+ G Sbjct: 115 GHVTVNGRVVNIASYQCRPGEEIAVRDKAPSRKLVENNLQYPGLANLPSHLEFDKNKLVG 174 Query: 181 TFKRKPERSDLSADINEHLIVELYSK 206 ER ++ +NE L+VE YS+ Sbjct: 175 KVNGVIEREWVALQVNELLVVEYYSR 200 >UniRef50_A0PXX4 30S ribosomal protein S4 A n=36 Tax=Bacteria RepID=RS4A_CLONN Length = 206 Score = 258 bits (660), Expect = 9e-68, Method: Composition-based stats. Identities = 115/209 (55%), Positives = 145/209 (69%), Gaps = 6/209 (2%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKC---KIEQAPGQHGARKPRLSDYGVQLRE 57 MARY+G +L RREG LFLK G R KC + APGQHG + +LS+YGVQLRE Sbjct: 1 MARYIGATCRLCRREGMKLFLK-GDRCYTDKCAFARRSYAPGQHGQGRKKLSNYGVQLRE 59 Query: 58 KQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQL 117 KQK RRIYG+LE QFR YY++A ++G TGENLL LLE RLDNVVY++GFG++RAEARQL Sbjct: 60 KQKARRIYGILEAQFRKYYEKAETMRGITGENLLKLLEMRLDNVVYKLGFGSSRAEARQL 119 Query: 118 VSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGK 177 V+H +VNG+ V+I SYQVS DV+S+REK++ + K E + P WLE + Sbjct: 120 VTHGHFLVNGKKVDIISYQVSAGDVISVREKSRGTEKFKTFAENPK--TLPAWLEGNIEN 177 Query: 178 MEGTFKRKPERSDLSADINEHLIVELYSK 206 EG +P R+D+ +NE LIVELYSK Sbjct: 178 FEGKVIAEPTRADIDVPVNETLIVELYSK 206 >UniRef50_Q3APJ9 30S ribosomal protein S4 n=12 Tax=Bacteroidetes/Chlorobi group RepID=RS4_CHLCH Length = 203 Score = 257 bits (656), Expect = 2e-67, Method: Composition-based stats. Identities = 100/207 (48%), Positives = 135/207 (65%), Gaps = 5/207 (2%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGA-RKPRLSDYGVQLREKQ 59 MAR+ G K+SRR G L K+ + PGQHG RK ++S+Y +QLREKQ Sbjct: 1 MARFRGSITKVSRRLGIALAPKAEK----YLERRPFPPGQHGQGRKGKISEYALQLREKQ 56 Query: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119 K++ +YG+LE+QFRNYYK+A +G TG+NL+ LLE RLDN+V+R GF +RA ARQLVS Sbjct: 57 KMKYLYGILEKQFRNYYKKAVAQRGVTGDNLVKLLERRLDNIVFRAGFSPSRAGARQLVS 116 Query: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179 H + VNG+ V+I SY VSP DV+ R+K+K S V +L + P W++VD + Sbjct: 117 HGHVTVNGKKVDIPSYLVSPADVMEFRQKSKNMSAVTDSLNKTPESRIPAWIQVDKAHQK 176 Query: 180 GTFKRKPERSDLSADINEHLIVELYSK 206 F PER+D+ + NE L+VELYSK Sbjct: 177 AVFLSVPERADIQEEFNEQLVVELYSK 203 >UniRef50_B0VI05 30S ribosomal subunit protein S4 n=6 Tax=Bacteria RepID=B0VI05_9BACT Length = 205 Score = 256 bits (654), Expect = 4e-67, Method: Composition-based stats. Identities = 90/207 (43%), Positives = 128/207 (61%), Gaps = 3/207 (1%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR-KPRLSDYGVQLREKQ 59 MA+Y GPK K+ R+ G +++ + I +K + GQHG + +LSDYG+ L+EKQ Sbjct: 1 MAKYTGPKAKICRKFGENIYGNAKYDKILSK--RKYPAGQHGRNLRRKLSDYGLHLKEKQ 58 Query: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119 K+R Y ++E+QF NY+K+AA+ G TG+NLL LLE RLDNVVYRMGF TR +ARQ ++ Sbjct: 59 KMRHTYCLMEKQFSNYFKKAAKAPGVTGDNLLQLLERRLDNVVYRMGFAVTRMQARQFIN 118 Query: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179 H +VNGR V+I SY V D++ +R K+K + A++ E +W+ VD Sbjct: 119 HGHFLVNGRKVDIPSYLVKAGDIIEVRPKSKGMKPLLEAMDKTEVTSPYSWMSVDKENFR 178 Query: 180 GTFKRKPERSDLSADINEHLIVELYSK 206 G F P S++ + LIVE YSK Sbjct: 179 GQFNSIPAVSEIPVTCDLRLIVEFYSK 205 >UniRef50_B1X067 30S ribosomal protein S4 n=18 Tax=cellular organisms RepID=RS4_CYAA5 Length = 202 Score = 255 bits (652), Expect = 6e-67, Method: Composition-based stats. Identities = 85/206 (41%), Positives = 117/206 (56%), Gaps = 6/206 (2%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 M+RY GP+L++ RR G L + PGQHG + + S+Y ++L EKQK Sbjct: 1 MSRYRGPRLRVVRRLGELPGLSRKTP------RRAYPPGQHGQGRRKRSEYAIRLEEKQK 54 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 + YGV E+Q Y K+A R +TG+ LL LLE RLDN V+R+G T ARQLV+H Sbjct: 55 LLYNYGVTEKQLVRYMKKARRSTDSTGQKLLELLEMRLDNTVFRLGMAGTIPGARQLVNH 114 Query: 121 KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEG 180 ++VNGRVVNIASYQ P DV+S+R K + V+ ++ P LE D + G Sbjct: 115 GHVIVNGRVVNIASYQCRPGDVISVRNKDNSRRMVETNMQYPGLANLPDHLEFDKNTLTG 174 Query: 181 TFKRKPERSDLSADINEHLIVELYSK 206 +R ++ INE L+VE YS+ Sbjct: 175 KVNDVIKREWVALQINELLVVEYYSR 200 >UniRef50_Q4FUD2 30S ribosomal protein S4 n=313 Tax=cellular organisms RepID=RS4_PSYA2 Length = 213 Score = 253 bits (647), Expect = 2e-66, Method: Composition-based stats. Identities = 139/213 (65%), Positives = 167/213 (78%), Gaps = 7/213 (3%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIE-QAPGQHGARKPRLSDYGVQLREKQ 59 MARY+GPKLKLSRREGTDL LKSGV+ D K K + PGQHG + + S+Y +QLREKQ Sbjct: 1 MARYIGPKLKLSRREGTDLGLKSGVKPYDVKTKKSARPPGQHGVSRNKSSEYSLQLREKQ 60 Query: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119 KV+RIYGVLERQF NYYKEAAR +G TGENLLA+LE RLDNVVYRMGFG+TRAEARQLVS Sbjct: 61 KVKRIYGVLERQFANYYKEAARKRGATGENLLAMLESRLDNVVYRMGFGSTRAEARQLVS 120 Query: 120 HKAIMVNG------RVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEV 173 H+ +MV VNI S Q+ DV++I+EK+++Q R+K A+ELA QR P WL+V Sbjct: 121 HRTVMVKKAGRDEFVRVNIPSIQLQDGDVIAIQEKSREQLRIKNAIELATQRGIPEWLDV 180 Query: 174 DAGKMEGTFKRKPERSDLSADINEHLIVELYSK 206 D K++GTFK+ P+R DL A+INE LIVELYSK Sbjct: 181 DHSKLQGTFKKAPDRIDLPAEINESLIVELYSK 213 >UniRef50_B9KZW1 30S ribosomal protein S4 n=56 Tax=Bacteria RepID=RS4_THERP Length = 217 Score = 250 bits (640), Expect = 1e-65, Method: Composition-based stats. Identities = 98/217 (45%), Positives = 134/217 (61%), Gaps = 12/217 (5%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCK-------IEQAPGQHGARKP---RLSD 50 M RY+GP +L RREG L+LK G R KC PGQHG + R S+ Sbjct: 1 MGRYIGPVCRLCRREGVKLYLK-GERCFGPKCPIVKRHPNKNYPPGQHGPTQRAARRPSE 59 Query: 51 YGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGAT 110 + +QLREKQK++R+YG+LERQFR ++ EA R G TG+NLL +LE RLDNVVYR+GF + Sbjct: 60 FALQLREKQKLKRVYGILERQFRRHFDEAERRPGLTGDNLLQILESRLDNVVYRLGFADS 119 Query: 111 RAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTW 170 R +ARQLV H +VNGR +I SYQV P D++++R +++++ K E A+ + P W Sbjct: 120 RRQARQLVRHGHFLVNGRKTDIPSYQVRPGDIIAVRPESRRREYFKVLEETAKNKAVPAW 179 Query: 171 LEVDAGKMEGTFKRKPERSDLS-ADINEHLIVELYSK 206 L D M G R P R ++ +N L+VE YS+ Sbjct: 180 LSRDLETMSGRVLRLPTRDEIDIPPVNTQLVVEYYSR 216 >UniRef50_A9B436 30S ribosomal protein S4 n=3 Tax=Bacteria RepID=RS4_HERA2 Length = 211 Score = 250 bits (639), Expect = 2e-65, Method: Composition-based stats. Identities = 117/211 (55%), Positives = 139/211 (65%), Gaps = 5/211 (2%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIE-QAPGQHGA--RKPRLSDYGVQLRE 57 MARY GP KLSRREG DL LKSG + Q PGQHGA R+ +LSDYGVQLRE Sbjct: 1 MARYTGPVCKLSRREGVDLMLKSGNSGRKVLERRGSQPPGQHGASVRRRQLSDYGVQLRE 60 Query: 58 KQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQL 117 KQKVRRIYGVLERQFR YY A R G TG LL +LE RLDNVV+R+G+ TRA+ARQL Sbjct: 61 KQKVRRIYGVLERQFRRYYGIATRTTGQTGAVLLQILERRLDNVVFRLGYAVTRAQARQL 120 Query: 118 VSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREK--PTWLEVDA 175 V+H I VNGR +I S V DV+ +R +++K+ K E + P+WL +DA Sbjct: 121 VNHGHITVNGRKTDIPSALVEVGDVIGVRAESRKRDYFKDLEETKQLNRVSPPSWLSLDA 180 Query: 176 GKMEGTFKRKPERSDLSADINEHLIVELYSK 206 GKMEG + P R +L INE LIVE YS+ Sbjct: 181 GKMEGVVQTFPSREELDMSINEQLIVEFYSR 211 >UniRef50_Q2JUD6 30S ribosomal protein S4 n=92 Tax=cellular organisms RepID=RS4_SYNJA Length = 203 Score = 250 bits (638), Expect = 3e-65, Method: Composition-based stats. Identities = 89/207 (42%), Positives = 116/207 (56%), Gaps = 7/207 (3%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIE-QAPGQHGARKPRLSDYGVQLREKQ 59 M+RY GP+LK+ RR G + + K PG HGA + + S+Y ++L EKQ Sbjct: 1 MSRYTGPRLKIIRRFG-----GLDLPGLTRKRPKNTNPPGMHGAERKKKSEYAIRLEEKQ 55 Query: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119 KVR YGV ERQ Y ++A R KG+TG LL +LE RLD +V+R+G T ARQLVS Sbjct: 56 KVRLNYGVSERQMLRYMRKARRSKGSTGLALLQMLEMRLDCIVFRLGMAPTIPAARQLVS 115 Query: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179 H I VNGR V I SY DV+++R K + V A E P +LE D K+ Sbjct: 116 HGHIEVNGRKVTIPSYGCKVGDVITVRNKESSRKLVAAYAEYPG-LFLPDYLEFDKEKLR 174 Query: 180 GTFKRKPERSDLSADINEHLIVELYSK 206 G K P R + A +NE L+VE YS+ Sbjct: 175 GRIKELPPREQICAPVNELLVVEFYSR 201 >UniRef50_A5GRL5 30S ribosomal protein S4 n=52 Tax=cellular organisms RepID=RS4_SYNR3 Length = 202 Score = 249 bits (637), Expect = 4e-65, Method: Composition-based stats. Identities = 90/206 (43%), Positives = 121/206 (58%), Gaps = 6/206 (2%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 M+RY G +L+++RR G L K PGQHG + + S+Y ++L EKQK Sbjct: 1 MSRYRGARLRVTRRLGDLPGLTRKA------AKRSYPPGQHGQARRKRSEYAIRLEEKQK 54 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 +R YGV ERQ Y K+A G+TG NLL LLE RLDNV +R+GFG T +RQLV+H Sbjct: 55 LRFNYGVSERQLVRYVKKARAQGGSTGTNLLKLLENRLDNVCFRLGFGPTIPGSRQLVNH 114 Query: 121 KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEG 180 + VNGRVV+IASYQ DV++IREK + + LE P LE++ K+ Sbjct: 115 GHVTVNGRVVDIASYQCKAGDVIAIREKKPSKKLAETNLEFPGLANIPPHLELEKSKLTA 174 Query: 181 TFKRKPERSDLSADINEHLIVELYSK 206 K ER ++ +INE L+VE YS+ Sbjct: 175 KVVGKCEREWVALEINELLVVEYYSR 200 >UniRef50_A0M574 30S ribosomal protein S4 n=23 Tax=Bacteria RepID=RS4_GRAFK Length = 201 Score = 248 bits (635), Expect = 7e-65, Method: Composition-based stats. Identities = 98/208 (47%), Positives = 128/208 (61%), Gaps = 9/208 (4%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG--ARKPRLSDYGVQLREK 58 MARY GPK K++R+ G +F + K PGQHG R+ + S+Y +QL EK Sbjct: 1 MARYTGPKTKIARKFGEAIFGDDK-----SFEKRNYPPGQHGNNRRRGKKSEYAIQLMEK 55 Query: 59 QKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 QK + YG+LERQFRN +++A R +G TGE LL L E RLDNVVYRMG +R ARQLV Sbjct: 56 QKAKYTYGILERQFRNMFEKATRAQGITGEVLLQLCESRLDNVVYRMGVAPSRRAARQLV 115 Query: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 H+ I VNG +VNI SY + DVV +REK+K + V+ +L + W+ ++ K Sbjct: 116 GHRHITVNGELVNIPSYHLKAGDVVGVREKSKSLAVVQESL--SNNSSVYEWISWNSEKK 173 Query: 179 EGTFKRKPERSDLSADINEHLIVELYSK 206 EGTF P R + +INE IVELYSK Sbjct: 174 EGTFVAVPGRVQIPENINEQFIVELYSK 201 >UniRef50_B8HXV1 30S ribosomal protein S4 n=431 Tax=cellular organisms RepID=RS4_CYAP4 Length = 204 Score = 248 bits (634), Expect = 8e-65, Method: Composition-based stats. Identities = 83/206 (40%), Positives = 116/206 (56%), Gaps = 4/206 (1%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 MARY GP+L++ RR G L + PGQHG + + S+Y ++L EKQK Sbjct: 1 MARYRGPRLRVIRRLGDLPGLTRKA----VPSRRAYPPGQHGQARKKRSEYAMRLEEKQK 56 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 +R YG+ ERQ Y + A R+ G+TG LL LLE RLDN+++R+G T ARQLV+H Sbjct: 57 LRFNYGLTERQLVRYVRRARRVSGSTGLALLQLLEMRLDNIIFRLGMAPTIPAARQLVNH 116 Query: 121 KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEG 180 + VNGRVV+I SYQ P + + IR K + + L+ PT LE+D K+ Sbjct: 117 GHVTVNGRVVSIPSYQCRPGNEIGIRNKENSRRLAEENLKFPGLANLPTHLELDKNKLMA 176 Query: 181 TFKRKPERSDLSADINEHLIVELYSK 206 ER ++ +NE L+VE YS+ Sbjct: 177 KVNSVVEREWVALQVNELLVVEYYSR 202 >UniRef50_B5Y961 Ribosomal protein S4 n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y961_COPPD Length = 210 Score = 244 bits (624), Expect = 1e-63, Method: Composition-based stats. Identities = 90/210 (42%), Positives = 124/210 (59%), Gaps = 7/210 (3%) Query: 3 RYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQ---APGQHG--ARKPRLSDYGVQLRE 57 +Y GP ++ RR G LFLK G + + KC +E+ PGQHG R R ++YG++L+E Sbjct: 2 KYTGPSCRICRRSGVKLFLK-GEKCLSPKCPMERRAFPPGQHGPTRRGKRDTEYGLRLKE 60 Query: 58 KQKVRRIYGVLERQFRNYYKEAARLKGN-TGENLLALLEGRLDNVVYRMGFGATRAEARQ 116 KQK+R Y + E Q R Y+ A KG TG LL LLE RLD VV RMGF ++ AR Sbjct: 61 KQKLRHSYMITETQLRRYFSTAMSQKGVATGTALLQLLERRLDAVVQRMGFASSIKMARN 120 Query: 117 LVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAG 176 V H +MVNG+ V+I SY V P D +++ + K V+ ++ + E R WL VD Sbjct: 121 WVRHGHVMVNGKRVDIPSYLVKPGDRITLDKDLKDNPDVQKSIAMNEGRPNLEWLNVDVE 180 Query: 177 KMEGTFKRKPERSDLSADINEHLIVELYSK 206 +EGT+ R P R ++ +NE LIVE YS+ Sbjct: 181 NLEGTYLRVPSREEIPVAVNEQLIVEYYSR 210 >UniRef50_Q01WB9 30S ribosomal protein S4 n=301 Tax=Bacteria RepID=RS4_SOLUE Length = 210 Score = 242 bits (618), Expect = 7e-63, Method: Composition-based stats. Identities = 106/211 (50%), Positives = 139/211 (65%), Gaps = 6/211 (2%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKC---KIEQAPGQHGA-RKPRLSDYGVQLR 56 MARY+GP + RREG L+LK G R KC K PGQHG R ++ YG+QLR Sbjct: 1 MARYIGPVCRQCRREGMKLYLK-GERCHSEKCAIEKRNFIPGQHGKDRAKKIVGYGLQLR 59 Query: 57 EKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQ 116 EKQKVRR+YGVLERQFRN +++AA KG TGENL+ LE RLD+V+YRMGFG +RA+ARQ Sbjct: 60 EKQKVRRVYGVLERQFRNAFEKAALQKGITGENLMQNLERRLDSVIYRMGFGTSRAQARQ 119 Query: 117 LVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAG 176 +V H I VNGR NI S ++ D +++RE +K + + +A + P W+EVD Sbjct: 120 VVRHGHINVNGRKCNIPSALINVGDEITVRETSKNNATILSARDATAHAPAPNWIEVDRE 179 Query: 177 KMEGTFKRKPERSD-LSADINEHLIVELYSK 206 ++G + P+R D + +NE LIVELYSK Sbjct: 180 GLKGRVQSLPKREDLVQIQLNEQLIVELYSK 210 >UniRef50_P56799 30S ribosomal protein S4, chloroplastic n=803 Tax=Eukaryota RepID=RR4_ARATH Length = 201 Score = 242 bits (617), Expect = 7e-63, Method: Composition-based stats. Identities = 74/206 (35%), Positives = 121/206 (58%), Gaps = 7/206 (3%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 M+RY GP+ K RR G + + +K + ++ +R + S Y ++L EKQK Sbjct: 1 MSRYRGPRFKKIRRLG-------ALPGLTSKRPKAGSDLRNQSRSVKKSQYRIRLEEKQK 53 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 +R YG+ E Q Y + A + KG+TG+ LL LLE RLDN+++R+G T +ARQLV+H Sbjct: 54 LRFHYGLTEHQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMALTIPQARQLVNH 113 Query: 121 KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEG 180 I+VNGR+V+I SY+ P D+++++++ ++ V+ L+ + E P L + + EG Sbjct: 114 GHILVNGRIVDIPSYRCKPRDIITVKDEQNSRTLVQNLLDSSAPEELPNHLTLHTFQYEG 173 Query: 181 TFKRKPERSDLSADINEHLIVELYSK 206 + +R + INE L+VE YS+ Sbjct: 174 LVNQIIDRKCVGLKINELLVVEYYSR 199 >UniRef50_Q1WT66 30S ribosomal protein S4 n=12 Tax=Bacteria RepID=RS4_LACS1 Length = 201 Score = 241 bits (615), Expect = 1e-62, Method: Composition-based stats. Identities = 99/208 (47%), Positives = 134/208 (64%), Gaps = 9/208 (4%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGA-RKPRLSDYGVQLREKQ 59 M+RY GP K+SRR G L + APGQHG R+ LS+YG+QLREKQ Sbjct: 1 MSRYTGPSWKVSRRLGFSLSGTGKE-----LSRRPYAPGQHGQDRRGSLSEYGLQLREKQ 55 Query: 60 KVRRIYGVLERQFRNYYKEAARLK-GNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 K+R YG+ ERQF N +K A +++ G G+N + LLE RLDNVVYR+G +TR +ARQLV Sbjct: 56 KLRMTYGLTERQFSNLFKRAGKIREGKHGDNFMILLERRLDNVVYRLGLASTRRQARQLV 115 Query: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 +H I V+G+ V+I SY+V P V+S+RE++K VK ALE R ++ D KM Sbjct: 116 NHGHITVDGKRVDIPSYEVEPGQVISLRERSKDLQIVKEALEAVVGRV--PFVNFDENKM 173 Query: 179 EGTFKRKPERSDLSADINEHLIVELYSK 206 EGT R P+R +L A+I+E L+VE Y++ Sbjct: 174 EGTLVRLPDREELDANIDEALVVEFYNR 201 >UniRef50_Q0ZJ18 30S ribosomal protein S4, chloroplastic n=973 Tax=Embryophyta RepID=RR4_VITVI Length = 201 Score = 240 bits (613), Expect = 2e-62, Method: Composition-based stats. Identities = 73/206 (35%), Positives = 119/206 (57%), Gaps = 7/206 (3%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 M+RY GP+ K RR G + + +K + ++ +R + S Y ++L EKQK Sbjct: 1 MSRYRGPRFKKIRRLG-------ALPGLTSKRPRAGSDLRNQSRSGKRSQYRIRLEEKQK 53 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 +R YG+ ERQ NY + A + KG TG LL LLE RLDN+++R+G +T ARQLV+H Sbjct: 54 LRFHYGLTERQLLNYVRIAGKAKGATGRVLLQLLEMRLDNILFRLGMASTIPGARQLVNH 113 Query: 121 KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEG 180 + I+VNGR+V+I SY+ P D+++ + K ++ ++ + + E P L + + +G Sbjct: 114 RHILVNGRIVDIPSYRCKPRDIITAGNEQKSRALIQNVFDSSSHEELPKHLTLHPFQFKG 173 Query: 181 TFKRKPERSDLSADINEHLIVELYSK 206 + + + + INE L+VE YS+ Sbjct: 174 LVNQIIDSNWVGLKINELLVVEYYSR 199 >UniRef50_Q2JFE9 30S ribosomal protein S4 n=124 Tax=Bacteria RepID=RS4_FRASC Length = 209 Score = 239 bits (611), Expect = 3e-62, Method: Composition-based stats. Identities = 103/210 (49%), Positives = 125/210 (59%), Gaps = 5/210 (2%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCK---IEQAPGQHGARKPRLSDYGVQLRE 57 MARY G K RRE T LFLK G + KC PG+HG + + S+Y +Q RE Sbjct: 1 MARYTGADCKRCRREKTKLFLK-GSKCDTPKCPIEIRPYPPGEHGRGRTKDSEYLLQKRE 59 Query: 58 KQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQL 117 KQK RIYGVLE+QFR YY EA R G TG+ LL +LE RLDNVVYR GF +R ARQ Sbjct: 60 KQKCARIYGVLEKQFRGYYDEANRRAGKTGDELLKILESRLDNVVYRGGFAPSRDAARQA 119 Query: 118 VSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQ-REKPTWLEVDAG 176 V H + VNGR V+I SY++S ND+V I KA++ + A E A Q R P WLEV Sbjct: 120 VRHGHVQVNGRKVDIPSYRISENDIVEIAPKARELTPFIVARETAGQGRAVPAWLEVIPS 179 Query: 177 KMEGTFKRKPERSDLSADINEHLIVELYSK 206 ++ P R + + E LIVELYSK Sbjct: 180 QLRILVHSLPARQVIDTQVQEQLIVELYSK 209 >UniRef50_A4WUP0 30S ribosomal protein S4 n=66 Tax=Bacteria RepID=RS4_RHOS5 Length = 206 Score = 236 bits (602), Expect = 4e-61, Method: Composition-based stats. Identities = 91/210 (43%), Positives = 127/210 (60%), Gaps = 9/210 (4%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKP-RLSDYGVQLREKQ 59 M + K K+ RR G +++ R K E PGQHG R+ +LSD+G QLR KQ Sbjct: 1 MTKRTSAKYKIDRRMGENIWG----RPKSPVNKREYGPGQHGQRRKNKLSDFGTQLRAKQ 56 Query: 60 KVRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 K++ YG + E+QFR Y EA R+KG+TGE L+ LLE RLD +VYR F T ARQ V Sbjct: 57 KLKGYYGDLTEKQFRKIYAEAERVKGDTGEMLVGLLERRLDAIVYRAKFVPTVFAARQFV 116 Query: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 +H + VNG+ VNI SY+ DV+ +RE++++ + V A +LAE R+ P ++EVD KM Sbjct: 117 NHGHVTVNGQRVNIGSYRCKEGDVIQVRERSRQLAIVLEATQLAE-RDVPDYIEVDYSKM 175 Query: 179 EGTFKRKPERSDLSADI--NEHLIVELYSK 206 TF R P D+ + +L+VE Y+K Sbjct: 176 TATFVRTPSLGDVPYPVVMEPNLVVEFYAK 205 >UniRef50_A9MAK7 30S ribosomal protein S4 n=56 Tax=Alphaproteobacteria RepID=RS4_BRUC2 Length = 205 Score = 236 bits (602), Expect = 4e-61, Method: Composition-based stats. Identities = 96/210 (45%), Positives = 134/210 (63%), Gaps = 9/210 (4%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKP-RLSDYGVQLREKQ 59 M++ K K+ RR G +++ R + E PGQHG R+ +LSD+GVQLR KQ Sbjct: 1 MSKRESAKYKIDRRLGENIWG----RPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQ 56 Query: 60 KVRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 K++ YG + E+QFR Y+EAAR KG+TGENL+ LLE RLD VVYR F T ARQ + Sbjct: 57 KLKGFYGDISEKQFRKTYEEAARRKGDTGENLIGLLESRLDAVVYRAKFVPTIFAARQFI 116 Query: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 +H + VNGR VNI SY++ DVV +REK+K+ + V A++LAE R+ P +++VD KM Sbjct: 117 NHGHVNVNGRRVNIQSYRLKVGDVVEVREKSKQLAIVLEAVQLAE-RDVPDYIDVDHNKM 175 Query: 179 EGTFKRKPERSDLSADI--NEHLIVELYSK 206 T+ R P SD+ + +L+VE YS+ Sbjct: 176 VATYNRVPGLSDVPYAVQMEPNLVVEFYSR 205 >UniRef50_C9M7W9 Ribosomal protein S4 n=2 Tax=Synergistaceae RepID=C9M7W9_9BACT Length = 206 Score = 234 bits (597), Expect = 2e-60, Method: Composition-based stats. Identities = 91/205 (44%), Positives = 120/205 (58%), Gaps = 4/205 (1%) Query: 2 ARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKV 61 R PK K+ RR G ++F + + PG R + S YG+QL+EKQK+ Sbjct: 6 TRKTAPKGKIVRRLGANIFGNQKYDKL--LSRKATPPGGQPRRHGKQSIYGLQLQEKQKI 63 Query: 62 RRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHK 121 R YGV ERQ Y A +++G TG N+L LLE RLDNVVYR+GF TR +ARQLV H Sbjct: 64 RFSYGVSERQLHKVYTLAKKMEGVTGSNMLILLESRLDNVVYRLGFCTTRPQARQLVCHG 123 Query: 122 AIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGT 181 VNGR V+I S +VS DV+SIRE +K +K LE+A +P WL + EGT Sbjct: 124 HFAVNGRKVDIPSARVSAGDVISIRENSKDMKVLKENLEVASAVSQPAWLSLSGT--EGT 181 Query: 182 FKRKPERSDLSADINEHLIVELYSK 206 R PERS++ +E ++VE Y+K Sbjct: 182 VLRLPERSEIVCLADEQVVVEYYAK 206 >UniRef50_D1C704 Ribosomal protein S4 n=2 Tax=Bacteria RepID=D1C704_SPHTD Length = 203 Score = 233 bits (596), Expect = 2e-60, Method: Composition-based stats. Identities = 92/207 (44%), Positives = 135/207 (65%), Gaps = 5/207 (2%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRL-SDYGVQLREKQ 59 MARY GPK K+SRREG +L +G R+ + +++ PG H +PR ++YG QLREKQ Sbjct: 1 MARYTGPKHKISRREGINL---TGTRSRSLERRLKTPPGAHAHARPRRMTEYGRQLREKQ 57 Query: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119 K++R +G+LE+QFR +++A R K TG L+ LLE RLDNVVYR+GF TR ARQLV+ Sbjct: 58 KLKRHFGMLEKQFRRTFQDARRSKEPTGTALVKLLESRLDNVVYRLGFTPTRPMARQLVN 117 Query: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179 H ++VNGR V+I SY+VSP D +++ EKA + V+ AL+ A + P+WL + + Sbjct: 118 HGHVLVNGRRVDIPSYRVSPGDTIALTEKAAEIPDVQEALQDAGH-QIPSWLSREGTQPV 176 Query: 180 GTFKRKPERSDLSADINEHLIVELYSK 206 G +P +L ++ LI+ Y++ Sbjct: 177 GRVISEPNPEELDIPVDIELIIAFYAR 203 >UniRef50_Q1ACM7 30S ribosomal protein S4, chloroplastic n=1359 Tax=Streptophytina RepID=RR4_CHAVU Length = 206 Score = 233 bits (596), Expect = 2e-60, Method: Composition-based stats. Identities = 75/206 (36%), Positives = 115/206 (55%), Gaps = 2/206 (0%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 M+RY GP+LK+ RR G + +K + + + ++S Y ++L EKQK Sbjct: 1 MSRYRGPRLKIVRRLGPLPGFTQKL--YKSKSQYLGSSTTSSSSNKKISQYNIRLLEKQK 58 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 +R YG+ ERQ Y A KG TG+ LL LLE RLDN+V+R+G T ARQLV+H Sbjct: 59 LRFYYGLTERQLLKYVTIARNAKGPTGQVLLQLLEMRLDNIVFRLGMAPTIPAARQLVNH 118 Query: 121 KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEG 180 + I+VN VNI SY D +S++++ + ++ + A + + P+ L ++ K EG Sbjct: 119 RHILVNDFTVNIPSYSCKLGDKISVQKRFESKTNIFANSTQSASLKVPSHLTLNPAKNEG 178 Query: 181 TFKRKPERSDLSADINEHLIVELYSK 206 + +R + A INE L+VE YS+ Sbjct: 179 LVHQIVDREFIGAKINELLVVEYYSR 204 >UniRef50_C6PD21 RNA-binding S4 domain protein n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PD21_CLOTS Length = 198 Score = 233 bits (595), Expect = 3e-60, Method: Composition-based stats. Identities = 95/205 (46%), Positives = 132/205 (64%), Gaps = 8/205 (3%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQ 59 MAR + PK ++ R G L ++ K APGQHG AR +LS+YG +L EKQ Sbjct: 1 MARTIVPKHRMCRIVGHPLCGSPKCPSL----KRPYAPGQHGLARGKKLSEYGRRLLEKQ 56 Query: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119 K++ IY V ERQ+R Y+++A + K T E LL+LLE RLDN+VYRMGF T ARQLVS Sbjct: 57 KLKSIYNVKERQYRRYFEKALKSKEPTSEKLLSLLERRLDNIVYRMGFAPTIYSARQLVS 116 Query: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179 H I+VNG+ VNI SY+V+ DVVS++EK+K +K ++ + P ++ VD KME Sbjct: 117 HGHILVNGKKVNIPSYEVNVGDVVSVKEKSKNMPLIKQSI---GTNDIPPYINVDVDKME 173 Query: 180 GTFKRKPERSDLSADINEHLIVELY 204 G + P RS++ +I++HL+VE Y Sbjct: 174 GKLIKLPRRSEIPVEIDDHLLVEFY 198 >UniRef50_A9BFZ1 30S ribosomal protein S4 n=32 Tax=Bacteria RepID=RS4_PETMO Length = 211 Score = 233 bits (594), Expect = 3e-60, Method: Composition-based stats. Identities = 99/211 (46%), Positives = 139/211 (65%), Gaps = 5/211 (2%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDT--KCKIEQAPGQHGARKPRLSDYGVQLREK 58 MARY+GP KLSRREG +L+LK + K PGQHG +K +L+ Y +QLR K Sbjct: 1 MARYIGPLEKLSRREGINLYLKGKRSYTEKSALRKRNYVPGQHGRQKQKLTQYAMQLRSK 60 Query: 59 QKVRRIYGVLERQFRNYYKEAARLK-GNTGENLLALLEGRLDNVVYRMGFGATRAEARQL 117 Q ++R+YG++ERQFRN ++EA R + G TGE L+ LLE RLD+VVY+MGF R ARQ+ Sbjct: 61 QALKRMYGLMERQFRNTFEEAERSRSGETGEVLMQLLERRLDSVVYQMGFAPNRRTARQI 120 Query: 118 VSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQ--REKPTWLEVDA 175 V+H I+VNG+ VNI SY+V DV+ ++EK++ +V+ LEL ++ R P WL V+ Sbjct: 121 VTHGHILVNGKKVNIPSYRVKVGDVIEVKEKSRNIQQVREGLELVQEGYRNIPNWLNVEI 180 Query: 176 GKMEGTFKRKPERSDLSADINEHLIVELYSK 206 GTF+R P+ ++ + I+ELYSK Sbjct: 181 ENFRGTFQRLPKIDEMDVPVPLTNIIELYSK 211 >UniRef50_Q1CXF1 30S ribosomal protein S4 B n=2 Tax=Cystobacterineae RepID=RS4B_MYXXD Length = 210 Score = 231 bits (589), Expect = 1e-59, Method: Composition-based stats. Identities = 77/208 (37%), Positives = 117/208 (56%), Gaps = 2/208 (0%) Query: 1 MARYLGPKLKLSRREGTDLFL-KSGVRAIDTKCKIEQAPGQHGAR-KPRLSDYGVQLREK 58 MAR LGP+ K+ RR G L + D + PGQHGA + +SD+ +LREK Sbjct: 1 MARDLGPRGKMCRRLGIPLSRITAKDPDKDPVLRRPYPPGQHGATARTSVSDFARRLREK 60 Query: 59 QKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 QK++ YG++E+Q R ++EA+R GNTG LL LLE RLD++V R G + +ARQ V Sbjct: 61 QKLKLYYGLMEKQCRAVFQEASRAPGNTGTVLLQLLESRLDSLVLRAGLATSIRQARQFV 120 Query: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 H + V+G+ +I S++V P V +K + V+ + + R P +++V Sbjct: 121 RHGYLHVDGKRADIPSFRVKPGSEVRFHAAHQKLAVVQESFSRMKSRSVPAYVQVLGEGE 180 Query: 179 EGTFKRKPERSDLSADINEHLIVELYSK 206 + R PER ++ D+NE IVE Y++ Sbjct: 181 GLRYVRLPEREEIPVDVNEPFIVEYYAQ 208 >UniRef50_C9KPD3 Ribosomal protein S4 n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KPD3_9FIRM Length = 197 Score = 230 bits (587), Expect = 3e-59, Method: Composition-based stats. Identities = 86/206 (41%), Positives = 118/206 (57%), Gaps = 9/206 (4%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 MA P LK R G + + + + + ++S+YG QL+EKQK Sbjct: 1 MAIDRVPALKRCRALGLEPAVIGRSKESKRQLRRTN---------RKVSEYGTQLKEKQK 51 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 + IYGVLE+QFR YY +A +++G TGENLL LLE RLDNVVYR+G TR +ARQLV H Sbjct: 52 AKFIYGVLEKQFRGYYDKAKKMQGVTGENLLGLLERRLDNVVYRLGLANTRRQARQLVRH 111 Query: 121 KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEG 180 VNG+ V+I S V+ DV+++ EK++ + K E + P WL+ D + G Sbjct: 112 GHFTVNGKRVDIPSALVNAGDVIAVAEKSQSNAFFKELKESSNALSAPAWLQADQANLTG 171 Query: 181 TFKRKPERSDLSADINEHLIVELYSK 206 T R P R ++ +NE IVELYSK Sbjct: 172 TVTRFPNRDEIDVPVNEQAIVELYSK 197 >UniRef50_Q1H2K1 30S ribosomal protein S4 n=6 Tax=Proteobacteria RepID=RS4_METFK Length = 205 Score = 229 bits (584), Expect = 6e-59, Method: Composition-based stats. Identities = 79/207 (38%), Positives = 113/207 (54%), Gaps = 7/207 (3%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR--KPRLSDYGVQLREK 58 M+R+ GP+LK+ R G DL S PGQHGA+ + + SD+GV+L+EK Sbjct: 1 MSRFTGPRLKVMRALGIDLPGLSRKTI----EARPTPPGQHGAKNTRRKKSDFGVKLQEK 56 Query: 59 QKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 QK+R YG+ E+Q R +A + K TGE LL LLE RLDNVV+R GF T A ARQLV Sbjct: 57 QKLRFNYGLSEKQLRRLMVDARKGKSPTGETLLQLLERRLDNVVFRAGFAPTIAAARQLV 116 Query: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 +H+ +M+NG+ VNI S +V D +S++ + K V L +P W+ Sbjct: 117 THRHVMLNGKSVNIPSIRVRVGDEISLKASSTKLPIVVETLANPP-LTRPEWISWAEQSQ 175 Query: 179 EGTFKRKPERSDLSADINEHLIVELYS 205 + P D+ ++ +VE Y+ Sbjct: 176 QAKVAHLPAAEDVPFPVDVQQVVEYYA 202 >UniRef50_D0JAU4 30S ribosomal protein S4 n=1 Tax=Blattabacterium sp. (Blattella germanica) str. Bge RepID=D0JAU4_BLASB Length = 208 Score = 228 bits (581), Expect = 1e-58, Method: Composition-based stats. Identities = 90/208 (43%), Positives = 129/208 (62%), Gaps = 8/208 (3%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG--ARKPRLSDYGVQLREK 58 MA+Y+GPK K+SRR G ++ + + + GQHG R+ + S+Y +QL EK Sbjct: 7 MAKYIGPKTKISRRFGECIYGEDKY-----FDRRKYPSGQHGNNRRRGKRSEYFIQLIEK 61 Query: 59 QKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 QK + YG+LERQF + EAAR KG TGE LL E RLDN+V+R+ F +R+ ARQ+V Sbjct: 62 QKAKYTYGILERQFEKLFFEAARKKGITGELLLQACESRLDNIVFRLKFAPSRSSARQIV 121 Query: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 SH+ I VN R+VNI S+++ P D + +REK+KK + +++ + WL D M Sbjct: 122 SHRHIFVNDRIVNIPSFRLKPGDKIGVREKSKKHPIILDSIQK-KTGTLVEWLIFDEKNM 180 Query: 179 EGTFKRKPERSDLSADINEHLIVELYSK 206 G F+ P+R+ + +I E LIVELYSK Sbjct: 181 VGIFRVMPKRTQIPENIKEQLIVELYSK 208 >UniRef50_A0T0H2 30S ribosomal protein S4, chloroplastic n=4 Tax=stramenopiles RepID=RR4_PHATR Length = 203 Score = 227 bits (578), Expect = 2e-58, Method: Composition-based stats. Identities = 86/208 (41%), Positives = 127/208 (61%), Gaps = 8/208 (3%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR--KPRLSDYGVQLREK 58 M+RY GPKLK+SRR GT L K PG+ G +L++YGV+L EK Sbjct: 1 MSRYRGPKLKISRRLGTLPGLT------TKKSNKLNRPGKDGNTDIGKKLTEYGVRLEEK 54 Query: 59 QKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 QK++ YG+ E+Q Y KEA R +G TG LL LLE RLD + + +GF + A+ARQLV Sbjct: 55 QKLKFNYGLTEKQLFRYVKEARRRQGVTGLILLQLLEMRLDTLCFTLGFAKSLAQARQLV 114 Query: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 +H I +N +VV+I S+Q ND++SI+EK+ ++ V+ ++ + RE PT L D K+ Sbjct: 115 NHGHITINKKVVSIPSFQCRLNDIISIKEKSSSKTLVETNIKNNQVREIPTHLRFDTVKL 174 Query: 179 EGTFKRKPERSDLSADINEHLIVELYSK 206 E +R+D+S ++E L++E YS+ Sbjct: 175 EAIVLDYCDRNDVSLQLDELLVIEHYSR 202 >UniRef50_B7T1T6 Ribosomal protein S4 n=1 Tax=Vaucheria litorea RepID=B7T1T6_VAULI Length = 204 Score = 225 bits (575), Expect = 5e-58, Method: Composition-based stats. Identities = 78/209 (37%), Positives = 120/209 (57%), Gaps = 10/209 (4%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRL---SDYGVQLRE 57 MARYLGP+LK+ RR G + + +K ++ GQ + + +L SDY ++L E Sbjct: 1 MARYLGPRLKIIRRFG-------NLPGLTSKIITKKPSGQQASNQKKLQKSSDYKIRLFE 53 Query: 58 KQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQL 117 KQK+R YG+ ERQ R Y EA R KG+T L+ LLE RLD +++R+G T ARQ Sbjct: 54 KQKLRYNYGLTERQLRKYVSEARRKKGSTAFYLMQLLEMRLDTIIFRLGLAPTIPAARQF 113 Query: 118 VSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGK 177 V+H I++N + +NI S+Q P D+++I+ K + V+ +L P L ++ Sbjct: 114 VNHGHILINKKKINIPSFQCHPTDIITIKNKKGTKQLVEKSLANPRFSTLPNHLTLNTKL 173 Query: 178 MEGTFKRKPERSDLSADINEHLIVELYSK 206 ++ K R DLS ++N+ LIVE Y++ Sbjct: 174 LQAEVKDIVIRKDLSFEVNDLLIVEYYAR 202 >UniRef50_C1ABG6 30S ribosomal protein S4 n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ABG6_GEMAT Length = 205 Score = 225 bits (574), Expect = 6e-58, Method: Composition-based stats. Identities = 74/210 (35%), Positives = 111/210 (52%), Gaps = 9/210 (4%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGA---RKPRLSDYGVQLRE 57 M+R +GP+LK+ RR G L + A + PGQHG R+ ++S Y ++L Sbjct: 1 MSR-VGPRLKIIRRLGIQLPGLTAKDA----ERRPYPPGQHGQSTARRRKVSLYRLRLEA 55 Query: 58 KQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQL 117 KQ +R YG+ E Q R Y A G TG+ +LA+LE RLDNVV+R+GF T ARQL Sbjct: 56 KQALRFYYGISENQLRRTYAMAKTRPGRTGDVMLAMLEARLDNVVFRLGFARTIPAARQL 115 Query: 118 VSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWL-EVDAG 176 V H + VNG V+ Y++ +++ + + + V+ L+ Q + P WL + D Sbjct: 116 VVHGHVYVNGSRVDRPGYRLRTGEMIKLDPRMAENPHVQEQLQRGPQVKLPGWLAKTDDA 175 Query: 177 KMEGTFKRKPERSDLSADINEHLIVELYSK 206 +EG P R + N+ IVE Y++ Sbjct: 176 PLEGRMIAPPTRESVPFACNDAAIVEYYAR 205 >UniRef50_Q2SSN9 30S ribosomal protein S4 n=25 Tax=Mycoplasmataceae RepID=RS4_MYCCT Length = 208 Score = 223 bits (568), Expect = 3e-57, Method: Composition-based stats. Identities = 90/208 (43%), Positives = 135/208 (64%), Gaps = 6/208 (2%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRL--SDYGVQLREK 58 M+R++G K SRR G + + K PGQHG + ++ S+YG QL+EK Sbjct: 1 MSRFIGSTFKKSRRFGFSILETG--KEFSKGKKRITTPGQHGKERAKVKVSEYGQQLQEK 58 Query: 59 QKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 QKV+ +YG+ ERQFRN + +A +++G G N L LLE RLDN+VYR+GF ATR ARQLV Sbjct: 59 QKVKFMYGLSERQFRNTFAKAKKMQGILGTNFLVLLESRLDNIVYRLGFSATRQGARQLV 118 Query: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 +H I+VNG+ V+I SY +S D+V ++ KK +V AL+ E +++V+ ++ Sbjct: 119 NHGHILVNGKKVDIPSYLLSVGDLVEVKASMKKNEKVLEALQNNEA--TLEFVKVNKNEV 176 Query: 179 EGTFKRKPERSDLSADINEHLIVELYSK 206 +G F R PER++L+++I+E LIVE Y++ Sbjct: 177 KGEFVRLPERNELNSEISESLIVEWYNR 204 >UniRef50_Q3KL69 30S ribosomal protein S4 n=17 Tax=Chlamydiales RepID=RS4_CHLTA Length = 209 Score = 221 bits (563), Expect = 1e-56, Method: Composition-based stats. Identities = 80/210 (38%), Positives = 119/210 (56%), Gaps = 9/210 (4%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 MARY GPK +++RR G ++F R + + PGQHG ++ + SDYG+QL EKQK Sbjct: 1 MARYCGPKNRIARRFGANIFG----RGRNPLLRKPNPPGQHGMQRKKKSDYGLQLEEKQK 56 Query: 61 VRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119 ++ YG +LE+Q YKE +GN + L E RLDN+VYR+GF T A+QLVS Sbjct: 57 LKACYGMILEKQLVKAYKEVVNKQGNVAQMFLEKFECRLDNIVYRLGFAKTIFAAQQLVS 116 Query: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179 H ++VNG+ V+ S+ V P +S++EK+K+ + V +LE +Q P +L +D + Sbjct: 117 HGHVLVNGKKVDRRSFFVRPGMQISLKEKSKRLAIVTESLENKDQSSLPAYLSLDKAAFK 176 Query: 180 GTFKRKPERSDL----SADINEHLIVELYS 205 G PE + +N +I E S Sbjct: 177 GELVVAPELDQIASQLPLPVNVSVICEFLS 206 >UniRef50_UPI00016B2693 ribosomal protein S4 n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B2693 Length = 205 Score = 220 bits (562), Expect = 2e-56, Method: Composition-based stats. Identities = 91/209 (43%), Positives = 121/209 (57%), Gaps = 7/209 (3%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGA-RKPRLSDYGVQLREKQ 59 MAR P +K SRREG L K A + PG+H R+ + S Y QLREKQ Sbjct: 1 MARDTSPIVKQSRREGYALHPK----AHKIMVRKSGIPGEHAHGRQGKPSLYLTQLREKQ 56 Query: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119 KVRR YG+LE+QF KEA R KG GENLL LLE RLDN VYR GF ++R ARQLVS Sbjct: 57 KVRRTYGLLEKQFSRLMKEATRKKGLAGENLLQLLERRLDNAVYRAGFASSRRAARQLVS 116 Query: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKP--TWLEVDAGK 177 H ++NGR V+I S ++ D +S+R K+ K ++ + + +W++ D Sbjct: 117 HGHFILNGRRVDIPSIRLKAGDEISVRPKSTKSGYFTHIDDIVKNSNQTALSWMKSDVKG 176 Query: 178 MEGTFKRKPERSDLSADINEHLIVELYSK 206 ++ + P+R + DINE LIVE YS+ Sbjct: 177 LKFSITGNPKREEAEPDINEQLIVEYYSR 205 >UniRef50_C3PN57 30S ribosomal protein S4 n=41 Tax=cellular organisms RepID=RS4_RICAE Length = 205 Score = 220 bits (561), Expect = 2e-56, Method: Composition-based stats. Identities = 82/210 (39%), Positives = 116/210 (55%), Gaps = 9/210 (4%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKP-RLSDYGVQLREKQ 59 M + + K K SRR G L+ S D PGQHG + SDYG+ L+ KQ Sbjct: 1 MTKIVRSKYKASRRLGVSLWGDSK----DAFNTRNYRPGQHGQNTMIKTSDYGLHLKAKQ 56 Query: 60 KVRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 +++ YG V E+QFRN + A ++KGNTGEN + LLE RLD VVYRM T ARQLV Sbjct: 57 RLKCHYGRVTEKQFRNIFALAQKMKGNTGENFIGLLESRLDTVVYRMNIAPTIFAARQLV 116 Query: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 SH I +NG+ +IAS ++ DV+ ++E K+ ++ ++ Q P +L D + Sbjct: 117 SHGHIKLNGKKADIASIRLKAGDVIEVKESVKQIPLIQESVSKQGQ-TTPGYLSFDVPSL 175 Query: 179 EGTFKRKPERSDLSADI--NEHLIVELYSK 206 G + R P SD+ HL++ELYS+ Sbjct: 176 TGKYLRVPALSDVPYPFEAEVHLVIELYSR 205 >UniRef50_Q47R66 30S ribosomal protein S4 n=2 Tax=Nocardiopsaceae RepID=RS4_THEFY Length = 203 Score = 219 bits (559), Expect = 4e-56, Method: Composition-based stats. Identities = 78/206 (37%), Positives = 114/206 (55%), Gaps = 6/206 (2%) Query: 3 RYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR-KPRLSDYGVQLREKQKV 61 RY GPK++LSRR G L K A+ K PG+HG R + SDY V+ EKQK+ Sbjct: 2 RYTGPKVRLSRRAGVPLTRK----AVKYFEKRPYPPGEHGRRVRRSTSDYAVRQAEKQKL 57 Query: 62 RRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHK 121 R Y + E+Q Y+ A + G TGE ++A LE RL V+ R GF A+ ARQ ++H Sbjct: 58 RWYYDLSEKQLARVYENAKKRPGRTGEEMIAELELRLATVLLRAGFAASIYAARQFINHG 117 Query: 122 AIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALE-LAEQREKPTWLEVDAGKMEG 180 I V+G+ V+I SYQV P +VS+REK++K A E + + ++L V + Sbjct: 118 HITVDGKKVDIPSYQVKPGQIVSVREKSRKLVPFIEAAEGVHADEKIASYLAVSHKDLTI 177 Query: 181 TFKRKPERSDLSADINEHLIVELYSK 206 +P+R + +E L+VE Y++ Sbjct: 178 AVVDRPKREQVPVPFDEQLVVEYYAR 203 >UniRef50_D2BEX9 30S ribosomal protein S4 n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2BEX9_STRRD Length = 204 Score = 219 bits (558), Expect = 6e-56, Method: Composition-based stats. Identities = 79/207 (38%), Positives = 114/207 (55%), Gaps = 7/207 (3%) Query: 3 RYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR--KPRLSDYGVQLREKQK 60 RY GPK++LSRR G L K+ VR + PG+HG + + + DYG++L EKQK Sbjct: 2 RYTGPKVRLSRRAGVPLTRKA-VRYFEE---RPYPPGEHGRKTNRRQTGDYGLRLMEKQK 57 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 +R Y V ERQ R Y+ A R G +G L+ LLE RL ++V R G + ARQ V+H Sbjct: 58 LRWYYDVSERQMRRYWDMALRSTGRSGAELVVLLESRLASLVLRAGLAPSIYAARQYVTH 117 Query: 121 KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELA-EQREKPTWLEVDAGKME 179 I V+GR V+I SY V P V+++R++++ AA E +L VD + Sbjct: 118 GHITVDGRKVDIPSYLVKPGQVIAVRQRSRAMQPFVAAAEGTYADDRIAPYLSVDHADLR 177 Query: 180 GTFKRKPERSDLSADINEHLIVELYSK 206 T +P R + ++E L+VE YS+ Sbjct: 178 FTVVGRPAREQIVVPVDEQLVVEFYSR 204 >UniRef50_D1J7L7 30S ribosomal protein S4 n=2 Tax=Mycoplasma RepID=D1J7L7_MYCHP Length = 199 Score = 217 bits (554), Expect = 1e-55, Method: Composition-based stats. Identities = 84/206 (40%), Positives = 120/206 (58%), Gaps = 7/206 (3%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 M++++G K SRR G L + K APGQHGA++ + SDY + + EKQK Sbjct: 1 MSKFVGSMFKKSRRYGISLL--ENNKEFTKGKKRTTAPGQHGAKRSKPSDYQLHMYEKQK 58 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 VR +YG+ ERQF+N + + ++ G TG NLL +E RLDN+V+R GF TRA+ARQLV+H Sbjct: 59 VRYMYGLNERQFKNLFIKVSKKAGVTGINLLQTVESRLDNLVFRAGFARTRAQARQLVNH 118 Query: 121 KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEG 180 V+G NI S V V+ ++E + +K A+E+ WL + Sbjct: 119 GHFTVDGCKANIPSMIVKVGSVIELKEALQNNVAIKDAIEVM---TVAPWLT--KENFKV 173 Query: 181 TFKRKPERSDLSADINEHLIVELYSK 206 TF R PER++ + DINE LIVE Y++ Sbjct: 174 TFTRLPERNEFAKDINESLIVEYYNR 199 >UniRef50_C9RJV5 Ribosomal protein S4 n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RJV5_FIBSS Length = 201 Score = 217 bits (552), Expect = 3e-55, Method: Composition-based stats. Identities = 82/207 (39%), Positives = 116/207 (56%), Gaps = 7/207 (3%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPR-LSDYGVQLREKQ 59 M+ + GPK K++R G + K+ + APGQHG + + S Y QL EKQ Sbjct: 1 MSSFRGPKGKVARSLGVAVSQKTQK----ALDRRNFAPGQHGQTRKKSASVYKQQLVEKQ 56 Query: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119 ++R Y + E Q YKEA R +G+ G+NL+ LLE RLD VVYRMGF T ARQ V+ Sbjct: 57 RLRFTYNISEAQLAKAYKEANRREGSAGDNLMILLETRLDAVVYRMGFARTIFAARQYVA 116 Query: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179 H VNG S + DV+++RE++K+ ++K A +A P +L VD GKM+ Sbjct: 117 HGHFTVNGVRSFSPSRLIKAGDVIAVREQSKEHVQIKEA--IASAAAAPEYLSVDLGKMQ 174 Query: 180 GTFKRKPERSDLSADINEHLIVELYSK 206 GT + P R + + E L+VE YS+ Sbjct: 175 GTLVKLPLRDQIPVKLEEQLVVEYYSR 201 >UniRef50_C1TPK7 SSU ribosomal protein S4P n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TPK7_9BACT Length = 205 Score = 216 bits (551), Expect = 3e-55, Method: Composition-based stats. Identities = 81/205 (39%), Positives = 114/205 (55%), Gaps = 5/205 (2%) Query: 2 ARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKV 61 R PK K+ RR G ++F G D + + R + S YG QL EKQK+ Sbjct: 6 NRKTAPKGKMVRRFGVNVF---GNTKYDRLLAKKSGANKKNRRPAKQSIYGQQLLEKQKI 62 Query: 62 RRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHK 121 R YGV E+Q R Y +A G G N+L LLE RLDNVVYR+G +TR +ARQLV H Sbjct: 63 RFAYGVSEKQLRAAYAKAKNQGGVAGHNMLILLESRLDNVVYRLGLCSTRPQARQLVRHG 122 Query: 122 AIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGT 181 +N R V+I S V P DV+++ EK+++ ++ E+A KP WL ++ M G Sbjct: 123 HFTLNDRKVDIPSALVKPGDVIAVAEKSREMKVLRENSEVASAVSKPGWLSLNG--MSGK 180 Query: 182 FKRKPERSDLSADINEHLIVELYSK 206 +R PER ++ +E ++VE YS+ Sbjct: 181 VERLPERQEIPTIADEQIVVEYYSR 205 >UniRef50_B7J2H5 30S ribosomal protein S4 n=21 Tax=Borrelia RepID=RS4_BORBZ Length = 208 Score = 216 bits (550), Expect = 4e-55, Method: Composition-based stats. Identities = 90/208 (43%), Positives = 124/208 (59%), Gaps = 4/208 (1%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGA-RKPRLSDYGVQLREKQ 59 M R K KL RR G ++F + I K PG HG RK ++++YG QL EKQ Sbjct: 1 MNRKQIAKGKLVRRFGINIFEQPKYDKILKK--KPHPPGMHGKARKAKITEYGKQLIEKQ 58 Query: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119 K++ YGV ERQ N +KEA + G TG+NLL++LE R+DNVVYR GF +RA ARQ+VS Sbjct: 59 KIKFTYGVSERQLTNTFKEAKKHHGVTGDNLLSILERRIDNVVYRAGFAISRAHARQIVS 118 Query: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQ-REKPTWLEVDAGKM 178 H I++NGR V I S + ND + I+EK + +++ +E R PTW+EV+A + Sbjct: 119 HGIIILNGRRVTIPSIILRANDQIQIKEKDSLKKLIRSNIEKTSSLRNLPTWIEVNADDL 178 Query: 179 EGTFKRKPERSDLSADINEHLIVELYSK 206 K P R ++ NE ++VE YSK Sbjct: 179 NIKVKHAPSRDEIPTLANEQMVVEYYSK 206 >UniRef50_A9KJG7 30S ribosomal protein S4 n=79 Tax=Bacteria RepID=RS4_CLOPH Length = 198 Score = 214 bits (546), Expect = 1e-54, Method: Composition-based stats. Identities = 105/207 (50%), Positives = 129/207 (62%), Gaps = 10/207 (4%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 MAR + P LK R G L+ ID K A ++S+YG QLREKQK Sbjct: 1 MARDMSPVLKRCRALG----LEPTFLGIDKKSNRNFA-----RAGKKISEYGTQLREKQK 51 Query: 61 VRRIYGVLERQFRNYYKEAARLK-GNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119 + IYGVLE+ FRN + +A +LK G TGENLL LLE RLDNV++RMG+G TR EARQ+V Sbjct: 52 AKFIYGVLEKPFRNNFDKAKKLKYGTTGENLLILLELRLDNVMFRMGYGRTRTEARQIVD 111 Query: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179 HK ++VNG+ VNI SYQV DV+SI+EK K R K LE+ + R P WLE D + Sbjct: 112 HKHVLVNGKCVNIPSYQVKAGDVISIKEKCKSAQRYKDILEVTDGRTVPAWLEADHENLT 171 Query: 180 GTFKRKPERSDLSADINEHLIVELYSK 206 GT K P R + +NE LIVELYSK Sbjct: 172 GTVKEIPTRDQIDVPVNEVLIVELYSK 198 >UniRef50_D1R5K6 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R5K6_9CHLA Length = 229 Score = 211 bits (538), Expect = 1e-53, Method: Composition-based stats. Identities = 84/200 (42%), Positives = 120/200 (60%), Gaps = 6/200 (3%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 MARY G K +++RR G ++F R + PG HGAR+ + SDYGVQL EKQK Sbjct: 24 MARYTGKKNRIARRFGANVFG----RLRNPLLHKPNPPGMHGARRRKKSDYGVQLEEKQK 79 Query: 61 VRRIYGVL-ERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119 ++ IYG+L E Q NYYK+AARL+ NT + L +LE RLD VV+R+ FG+T A+QLVS Sbjct: 80 LKAIYGMLSEGQLINYYKKAARLEANTAQVLAQMLECRLDIVVHRLKFGSTIFAAQQLVS 139 Query: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179 H I+V+G+ V+ S+QV P V+S+REK++ ++ A + + R P +L +D Sbjct: 140 HGHILVDGKKVDRRSFQVRPGMVISVREKSRGIKAIQEA-QDSSMRSVPEYLSIDKENFS 198 Query: 180 GTFKRKPERSDLSADINEHL 199 G P + I +L Sbjct: 199 GQLLEYPSYELMPWPIPINL 218 >UniRef50_Q7UXM6 30S ribosomal protein S4 n=6 Tax=Planctomycetaceae RepID=RS4_RHOBA Length = 202 Score = 211 bits (538), Expect = 1e-53, Method: Composition-based stats. Identities = 75/206 (36%), Positives = 111/206 (53%), Gaps = 4/206 (1%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 MARY GPK +++RR GT L+ +G A + Q PG H R R S+YG L EKQK Sbjct: 1 MARYTGPKARINRRLGTMLYETAG--AARAMDRRPQPPGMH-TRGRRPSNYGAALMEKQK 57 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 ++ YG+ ERQ R Y++ R GNTGE LL + E RLDNVV R+GF TR +ARQ ++H Sbjct: 58 IKHYYGLGERQLRRYFENVGRKSGNTGELLLLMCERRLDNVVRRVGFTKTRPQARQGITH 117 Query: 121 KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEG 180 VNG V Y + D++ +R + ++ + + + W+ D+ + Sbjct: 118 GHFRVNGVKVTKPGYMLRAGDLIEVRGRENLKNLYRGVIANSPPDGL-DWVSFDSETLRA 176 Query: 181 TFKRKPERSDLSADINEHLIVELYSK 206 T P D+S ++ + +VE S+ Sbjct: 177 TVLSLPGAVDISLPVDANSVVEFLSR 202 >UniRef50_A5KQD5 Putative uncharacterized protein n=3 Tax=Ruminococcus RepID=A5KQD5_9FIRM Length = 181 Score = 209 bits (532), Expect = 5e-53, Method: Composition-based stats. Identities = 83/164 (50%), Positives = 110/164 (67%) Query: 43 ARKPRLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVV 102 ++S+YG+QLREKQK + IYGVLE+ FRNYY +A +++G TGENL+ +LE RLDNV+ Sbjct: 18 RANRKMSEYGLQLREKQKAKFIYGVLEKPFRNYYAKAKQMEGMTGENLMRILESRLDNVI 77 Query: 103 YRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELA 162 +RMG TR EARQ+V HK ++VNG+ VNI SY V D + I+E K R K LE Sbjct: 78 FRMGLARTRKEARQIVDHKHVLVNGKQVNIPSYLVKAGDTIEIKENKKGSQRYKDILEAT 137 Query: 163 EQREKPTWLEVDAGKMEGTFKRKPERSDLSADINEHLIVELYSK 206 P WL+VDA ++G+ K P R + ++E LIVELYSK Sbjct: 138 GSNMVPEWLDVDAENLKGSVKELPAREAIDVPVDEMLIVELYSK 181 >UniRef50_A5CCV1 30S ribosomal protein S4 n=58 Tax=Bacteria RepID=RS4_ORITB Length = 207 Score = 206 bits (526), Expect = 3e-52, Method: Composition-based stats. Identities = 84/211 (39%), Positives = 113/211 (53%), Gaps = 11/211 (5%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKP--RLSDYGVQLREK 58 M + + K K+SRR GT ++ D PGQ G + SDY L K Sbjct: 1 MTKVIKSKYKVSRRLGTSVWGHEK----DAINNKNYKPGQQGNSSSISKPSDYSKHLIAK 56 Query: 59 QKVRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQL 117 Q+++ YG + E+QFRN +K A + GNT ENL+ LLE RLD VVYR+ T ARQL Sbjct: 57 QRLKSHYGRISEKQFRNTFKIARKKSGNTAENLVGLLERRLDAVVYRLNIAPTIFAARQL 116 Query: 118 VSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGK 177 VSHK I VNG+ +NIASY+V D + + E+AK+ V A+ + R P +L D K Sbjct: 117 VSHKHIKVNGKKINIASYRVKAGDSIELSEQAKQIPIVIGAISK-KARRIPEYLAFDDEK 175 Query: 178 MEGTFKRKPER-SDLSADINEH--LIVELYS 205 G F R P S++ + L+VE YS Sbjct: 176 FIGNFIRMPSSISEVPYPFDPQINLVVEFYS 206 >UniRef50_A6TSI5 30S ribosomal protein S4 B n=42 Tax=Clostridiales RepID=RS4B_ALKMQ Length = 199 Score = 206 bits (524), Expect = 4e-52, Method: Composition-based stats. Identities = 76/206 (36%), Positives = 113/206 (54%), Gaps = 9/206 (4%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 MAR P+ K RR G ++ +++A K +LS YG+QL EKQ+ Sbjct: 1 MARMRQPRFKTCRRLGINVCGHPK--------AMKRADNGQVRDKRKLSSYGIQLLEKQR 52 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 +R Y V+E+QF+ Y K A + TG +L+ LE RLDN+VYR GFG++ +ARQ+V H Sbjct: 53 LRAYYEVMEKQFKIYVKAAIKDSETTGNSLIKKLECRLDNLVYRTGFGSSIRQARQMVVH 112 Query: 121 KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEG 180 I+VNG+ V+ S+ VS D +S+REK++K P ++ + G Sbjct: 113 GHILVNGKKVDRPSFAVSVGDDISLREKSRKNKIFIDNFLRNVDFSYP-YIAKNEAGFSG 171 Query: 181 TFKRKPERSDLSADINEHLIVELYSK 206 R PER + ++N+HL+VE YSK Sbjct: 172 QLIRMPERHEAPIEVNDHLVVEFYSK 197 >UniRef50_O22020 30S ribosomal protein S4, chloroplastic n=1 Tax=Cyanidioschyzon merolae RepID=RR4_CYAME Length = 190 Score = 203 bits (518), Expect = 2e-51, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 108/206 (52%), Gaps = 19/206 (9%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 M+RYLGP++++ RR G + K PG+H + +LS+Y L+ +QK Sbjct: 1 MSRYLGPRVRIIRRLGILPAFTNKSP-----NKRTGVPGEHAHKTRKLSEYAGVLQGEQK 55 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 ++ YG+ Q Y+++A + + +TG LL +LE RLD+VVYR GF T ARQLV+H Sbjct: 56 LQYYYGITNNQLARYFRQAKKSRASTGIELLKMLETRLDHVVYRAGFAPTLPAARQLVNH 115 Query: 121 KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEG 180 + VNG V IAS+ N ++ ++ K+ ++ P +L+V Sbjct: 116 GHVKVNGNQVTIASFACQVNHIIEVKAKSPSSAQ------------LPPYLQV--ENQFV 161 Query: 181 TFKRKPERSDLSADINEHLIVELYSK 206 + E+ L+ +NE L+VE Y++ Sbjct: 162 KMIQPVEKDWLAFRVNELLVVEYYTR 187 >UniRef50_B2S2Q4 30S ribosomal protein S4 n=4 Tax=Treponema RepID=RS4_TREPS Length = 204 Score = 203 bits (518), Expect = 2e-51, Method: Composition-based stats. Identities = 79/201 (39%), Positives = 122/201 (60%), Gaps = 5/201 (2%) Query: 8 KLKLSRREGTDLFLKSGVRAIDTKCKIEQAPG-QHGARKP-RLSDYGVQLREKQKVRRIY 65 + K+ RR G ++F + K PG +HG ++ ++S YG QL+EKQK R Y Sbjct: 7 RGKIVRRLGINIFGNPKYTRLLGK--KPAPPGKEHGVKQRAKVSVYGEQLKEKQKFRFAY 64 Query: 66 GVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMV 125 G+ ERQFRN + +A R+KG TG N+L+L+E RLDN V+RMGF +R +ARQ+VSH+ ++ Sbjct: 65 GMSERQFRNLFAQAHRMKGVTGNNMLSLMERRLDNTVFRMGFAISRVQARQMVSHRYFLI 124 Query: 126 NGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFKRK 185 NG+ NI S ++S +DV++ + + S ++ L L+ Q ++ +WL VD ++ T Sbjct: 125 NGKTANIPSMRISAHDVITTKNRKGIHSIIRHNLTLS-QGQRGSWLNVDEEQLSATVSEL 183 Query: 186 PERSDLSADINEHLIVELYSK 206 P D+ N IVE YS+ Sbjct: 184 PRAQDIHPVGNIQHIVEYYSR 204 >UniRef50_C6UNA0 30S ribosomal subunit protein S4 n=1 Tax=Candidatus Hodgkinia cicadicola Dsem RepID=C6UNA0_HODCD Length = 207 Score = 203 bits (516), Expect = 3e-51, Method: Composition-based stats. Identities = 67/209 (32%), Positives = 104/209 (49%), Gaps = 9/209 (4%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR-KPRLSDYGVQLREKQ 59 M R L PK K RR G L+ S + ++ APGQHG + + +S+Y ++L KQ Sbjct: 1 MNRRLRPKFKFDRRVGESLWGVSR----SSVNRVPTAPGQHGYKTRSSVSEYAIRLTAKQ 56 Query: 60 KVRRIY-GVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 K++ Y + E + YK A + +G+ NL+ +LE RLD +VYR A+ ARQL+ Sbjct: 57 KLKFYYSNLTESKLVKAYKTALKYRGDVAHNLVRVLERRLDVLVYRARLAASFRAARQLI 116 Query: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 SH ++VN V+I S++ P DV + + VK A+ L +R P + D + Sbjct: 117 SHGHVLVNNSKVDICSFECKPGDVFRVAPCFVNAAVVKEAV-LGCERSVPNHISCDFKHL 175 Query: 179 EGTFKRKPERSD--LSADINEHLIVELYS 205 + T + P + L+ E YS Sbjct: 176 KFTLVKPPAACGALFPVAMCPELVAEYYS 204 >UniRef50_C7LKJ2 30S ribosomal subunit protein S4 n=1 Tax=Candidatus Sulcia muelleri SMDSEM RepID=C7LKJ2_SULMS Length = 223 Score = 199 bits (507), Expect = 4e-50, Method: Composition-based stats. Identities = 90/224 (40%), Positives = 123/224 (54%), Gaps = 19/224 (8%) Query: 1 MARYLGPKLKLSRR--EGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRL---------- 48 MA+Y+GPK K++R+ G ++LK + K Q + ++ Sbjct: 1 MAKYIGPKNKIARKFELGESIYLKEKNNFENKKTFDGQYVNPRSGKNRKIIKKLNKKLNK 60 Query: 49 ------SDYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVV 102 S Y +QL EKQKV+ YG+LE+QFR +++A++ KG GE LL L E RLDN+V Sbjct: 61 KLNKKKSFYFIQLLEKQKVKYTYGILEKQFRKMFEKASKKKGRKGEILLQLCESRLDNIV 120 Query: 103 YRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELA 162 YR+ TR EARQLVSH+ I VNG++VNI SY + P D +S+ EK KKQ + + Sbjct: 121 YRLKLSHTRPEARQLVSHRHITVNGKIVNIPSYNLKPGDKISLIEKYKKQKAIL-LEKKR 179 Query: 163 EQREKPTWLEVDAGKMEGTFKRKPERSDLSADINEHLIVELYSK 206 + TWL D G K P R + INE+LIVELY K Sbjct: 180 LVGKVTTWLSWDNENFIGILKSIPRREQIPEMINENLIVELYYK 223 >UniRef50_A5CRZ7 30S ribosomal protein S4 n=75 Tax=Actinobacteria (class) RepID=RS4_CLAM3 Length = 209 Score = 199 bits (507), Expect = 4e-50, Method: Composition-based stats. Identities = 73/206 (35%), Positives = 116/206 (56%), Gaps = 8/206 (3%) Query: 4 YLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRL-SDYGVQLREKQKVR 62 K +LSR G L K+ K APG+HG K + SDY V+LREKQ++R Sbjct: 6 RTRSKTRLSRALGIPLTPKAAK----YLEKRPYAPGEHGRSKRKQDSDYAVRLREKQRLR 61 Query: 63 RIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKA 122 YG+ E Q + ++EA R +G TGENL+ +LE RLD +V R G T A+ARQLV H+ Sbjct: 62 AQYGIREAQLKIAFQEARRTQGLTGENLVEILEQRLDALVVRSGLARTTAQARQLVVHRH 121 Query: 123 IMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQR---EKPTWLEVDAGKME 179 IMV+G++V+ S++V ++ ++ +++ + A + P++LEV+ K++ Sbjct: 122 IMVDGKIVDRPSFRVKAGQMIHVKPRSEGTEPFQVAAAGGHADVLPKLPSYLEVELDKLQ 181 Query: 180 GTFKRKPERSDLSADINEHLIVELYS 205 R P+R+++ L+VE Y+ Sbjct: 182 ARLVRLPKRAEVPVTCEVQLVVEYYA 207 >UniRef50_D1N636 Ribosomal protein S4 n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N636_9BACT Length = 200 Score = 196 bits (499), Expect = 4e-49, Method: Composition-based stats. Identities = 62/200 (31%), Positives = 99/200 (49%), Gaps = 8/200 (4%) Query: 8 KLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGA-RKPRLSDYGVQLREKQKVRRIYG 66 K K RR G ++ ++ K A G HG R+ +LS YG L EKQK++ Y Sbjct: 8 KHKFCRRIGQCIWGDPKCPSV----KRPYAAGPHGKGRRVKLSTYGELLMEKQKLKNYYA 63 Query: 67 VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVN 126 + E+Q + Y +A G T E L LE RLD +V+R GF T A+Q V+H I+V+ Sbjct: 64 ISEKQLQIAYAKAKAGTGQTHEKLFRSLEQRLDAMVFRAGFAPTIFAAKQFVNHGHILVD 123 Query: 127 GRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFKRKP 186 G+ ++ +S V V+SI A K + + P ++EVD ++ T R P Sbjct: 124 GKRIDRSSCLVKEGQVISI--DAAKSPAIAE-IAKKGNSTIPAYMEVDLENLKATLTRAP 180 Query: 187 ERSDLSADINEHLIVELYSK 206 + ++ + ++E Y++ Sbjct: 181 QLEEIPVSVKIMSVIEYYAR 200 >UniRef50_Q06J34 30S ribosomal protein S4, chloroplastic n=1 Tax=Bigelowiella natans RepID=RR4_BIGNA Length = 194 Score = 195 bits (496), Expect = 9e-49, Method: Composition-based stats. Identities = 72/205 (35%), Positives = 99/205 (48%), Gaps = 13/205 (6%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 MARY G ++K+ RR G K P + +LS YG L+EKQK Sbjct: 1 MARYRGSRVKVIRRLGLLPGFT---------SKSSNKPQNNN---KQLSQYGFHLQEKQK 48 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 +R YG+ E + Y K A R +GN+G+ LL LLE RLD ++YR GF T A ARQL+SH Sbjct: 49 LRYNYGISEHELIKYVKSARRKRGNSGDKLLQLLEMRLDTLLYRTGFVPTVASARQLISH 108 Query: 121 KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEG 180 I VNG+ V+I + S +D + I ++ K K + L + Sbjct: 109 GHINVNGKKVDIPGFNCSISDKIVINKEILKSLNDKNN-SFSTLNCSHLVLNELNNDLTI 167 Query: 181 TFKRKPERSDLSADINEHLIVELYS 205 T P+ L IN L++E YS Sbjct: 168 TVTNLPDIQVLGYSINILLVLEYYS 192 >UniRef50_P58134 Plastid 30S ribosomal protein S4 n=1 Tax=Euglena longa RepID=RR4_ASTLO Length = 206 Score = 195 bits (495), Expect = 1e-48, Method: Composition-based stats. Identities = 73/207 (35%), Positives = 121/207 (58%), Gaps = 4/207 (1%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 M RYLGP +K+ R+ G+ L++ + + + + + S Y ++L+EKQK Sbjct: 1 MVRYLGPHVKVIRKLGS---LRAFTKKKIKRYFKLDTKKRKLSFNKKTSKYKIRLKEKQK 57 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 +R + + E+Q NY K+A +LKG++GENLL LE RLDN+VYR+G T +RQL++H Sbjct: 58 LRFNFAISEKQLFNYVKKAIKLKGSSGENLLVALEMRLDNIVYRLGLAPTIISSRQLINH 117 Query: 121 KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQR-EKPTWLEVDAGKME 179 I V+G+VVNI S++ P + + I++ + ++ +EL ++ P+ L + K+E Sbjct: 118 GHIYVDGKVVNIPSFKCKPTNNIKIKDNLVSKRIIEKNIELLDKYFRAPSHLYFNKKKLE 177 Query: 180 GTFKRKPERSDLSADINEHLIVELYSK 206 +R D+ INE LI+E YS+ Sbjct: 178 AKVINMVKREDIKLIINELLIIEFYSR 204 >UniRef50_UPI00016C3E34 30S ribosomal protein S4 n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3E34 Length = 196 Score = 191 bits (487), Expect = 8e-48, Method: Composition-based stats. Identities = 84/192 (43%), Positives = 114/192 (59%), Gaps = 9/192 (4%) Query: 23 SGVRAIDTKCKIEQ---APGQHGARKPRLSDYGVQLREKQKVRRIYGVLERQFRNYYKEA 79 G R KC I++ PG HG R+ + S+YG++LREKQK++R YGVLE QFR YY A Sbjct: 6 KGDRCFGPKCPIDKQKPPPGMHGLRRSKTSEYGIRLREKQKLKRFYGVLEAQFRRYYGLA 65 Query: 80 ARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSP 139 + GNTGE LL++LE RLDNVV+R+GF R ARQ+VSH I+VNG +IAS V P Sbjct: 66 TKAVGNTGEQLLSILERRLDNVVHRLGFAVNRTSARQMVSHGHILVNGVKCDIASMLVKP 125 Query: 140 NDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDA--GKMEGTFKRKPERSDLS---AD 194 DV+ ++ + + L R P +LE+ + EG R P R D+ D Sbjct: 126 GDVIKVKTRDSSLKMARDTLAKGTVR-IPDFLELTGTQDQPEGRMNRTPTRQDVDERITD 184 Query: 195 INEHLIVELYSK 206 I E LI+E+ ++ Sbjct: 185 IREQLIIEIATR 196 >UniRef50_Q6MIP0 30S ribosomal protein S4 B n=1 Tax=Bdellovibrio bacteriovorus RepID=RS4B_BDEBA Length = 208 Score = 191 bits (485), Expect = 2e-47, Method: Composition-based stats. Identities = 73/202 (36%), Positives = 115/202 (56%), Gaps = 7/202 (3%) Query: 7 PKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRIYG 66 P+ K RR T+L A++ + PGQHG ++ + S++ +QL EKQK+R YG Sbjct: 8 PRFKRQRRLLTELPGMGKAGALE---RRPYPPGQHGLQRRKYSEFALQLEEKQKLRFHYG 64 Query: 67 VLERQFRNYYKEAARLKG-NTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMV 125 + E QFR +A + K N E L+ LLE RLDNVV+R+GF ++ ARQLVSH ++V Sbjct: 65 LREEQFRRLINKAKKSKATNWVEALVNLLEKRLDNVVFRLGFASSIPAARQLVSHGKVLV 124 Query: 126 NGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWL--EVDAGKMEGTFK 183 NG+ VNI S + D ++++++A Q++V A + A + P+++ E AGK +G Sbjct: 125 NGKKVNIGSQIIKVGDKITLKDEA-YQNQVYMAAKQAPRLPLPSFMAKEDVAGKEQGRLT 183 Query: 184 RKPERSDLSADINEHLIVELYS 205 +P + L++ YS Sbjct: 184 DEPNLEAVPFAFEPGLVIGYYS 205 >UniRef50_Q8WL66 Ribosomal protein small subunit 4 (Fragment) n=12 Tax=Embryophyta RepID=Q8WL66_9TRAC Length = 177 Score = 190 bits (484), Expect = 2e-47, Method: Composition-based stats. Identities = 57/157 (36%), Positives = 94/157 (59%), Gaps = 5/157 (3%) Query: 53 VQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRA 112 ++L KQ++R YG+ ERQ Y + A + +G+TG+ L LLE RLDNV++ +G +T Sbjct: 21 LRLEAKQRLRFNYGLTERQLLKYVRIARKTRGSTGQVPLQLLEMRLDNVIFHLGMASTIP 80 Query: 113 EARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLE 172 ARQLV+H+ I+VN R+V+I SY+ P D++++R ++ + ++ E + P L Sbjct: 81 AARQLVNHRHILVNNRIVDIPSYRCKPKDIITLRNQSTFCNALRG--ESPGGGKTPDHLT 138 Query: 173 V---DAGKMEGTFKRKPERSDLSADINEHLIVELYSK 206 V + + G R R ++ +INE L+VE YS+ Sbjct: 139 VSLSEGNRPTGVVNRIANRESVNLNINELLVVEYYSR 175 >UniRef50_Q2GDI3 30S ribosomal protein S4 n=3 Tax=Anaplasmataceae RepID=RS4_NEOSM Length = 205 Score = 183 bits (464), Expect = 4e-45, Method: Composition-based stats. Identities = 73/208 (35%), Positives = 109/208 (52%), Gaps = 9/208 (4%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARK-PRLSDYGVQLREKQ 59 M + K ++SR+ L+ D K APGQHG ++SD+ Q ++ Sbjct: 1 MTTTIRRKFRVSRQMKASLWGSQK----DPVHKRNYAPGQHGRAPVKKISDFYKQNAAQR 56 Query: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119 R Y + ++QF N + +A R KGNT +NL++LLE R+ +V+YR G T ARQL+S Sbjct: 57 AFRTYYVIGKKQFANVFSKAYRGKGNTNDNLISLLESRVSSVLYRSGMVPTIFAARQLIS 116 Query: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179 HK + VNG +VNI S+ + DVV IR++A V AAL + P +LEVD K Sbjct: 117 HKHVTVNGEIVNICSFTLKEGDVVQIRDRASNIPCVVAALNSNSE--SPHYLEVDREKRS 174 Query: 180 GTFKRKPERSDLSADI--NEHLIVELYS 205 P+ D+ + +L+ E +S Sbjct: 175 VKLLVLPKFEDVPYPVVMEPNLVTEYFS 202 >UniRef50_Q06SJ3 30S ribosomal protein S4, chloroplastic n=2 Tax=Viridiplantae RepID=RR4_STIHE Length = 2922 Score = 181 bits (460), Expect = 1e-44, Method: Composition-based stats. Identities = 66/182 (36%), Positives = 99/182 (54%), Gaps = 15/182 (8%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQ-------APGQHGA-----RKPRL 48 M+RYLGP+L+++RR G L A + PG+HG +KP Sbjct: 1 MSRYLGPRLRITRRLGHLSGLTRKKPAFKPLNPVNPFGPRKIIPPGEHGRNKSFKKKPYE 60 Query: 49 S---DYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRM 105 S DY ++L+ KQ++R YG+ ERQ Y ++A ++KG+TG LL LLE RLDN+V+R+ Sbjct: 61 SCEYDYLIRLKLKQRLRFHYGLTERQLVRYVQQAKKIKGSTGRVLLRLLEMRLDNIVFRL 120 Query: 106 GFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQR 165 T ARQL+SH I++N + V I SYQ P D++++ K V L ++ Sbjct: 121 HMAPTIKAARQLISHGHILINKKKVTIPSYQCEPKDIITVAPKIISMELVSRFLSEFDRE 180 Query: 166 EK 167 + Sbjct: 181 KS 182 >UniRef50_Q85XL2 Small ribosomal protein 4 (Fragment) n=2 Tax=Embryophyta RepID=Q85XL2_9BRYO Length = 146 Score = 180 bits (458), Expect = 2e-44, Method: Composition-based stats. Identities = 53/144 (36%), Positives = 82/144 (56%) Query: 63 RIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKA 122 YG+ ERQ NY + A + KG+TGE LL LLE RLDNV++R+G T ARQ V+H+ Sbjct: 1 FHYGITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQXVNHRH 60 Query: 123 IMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTF 182 I+VN R+V+I SY+ P D ++I++ + ++ ++ P L + + +G Sbjct: 61 ILVNDRIVDIPSYRXKPQDFITIKDPQXSHAIXSKNIDFHQKYXIPNHLTYNPLENKGLV 120 Query: 183 KRKPERSDLSADINEHLIVELYSK 206 + +R + INE L E YS+ Sbjct: 121 NQILBRESIGLKINELLXXEYYSR 144 >UniRef50_B2X261 Ribosomal protein S4 (Fragment) n=1 Tax=Floydiella terrestris RepID=B2X261_9CHLO Length = 518 Score = 178 bits (451), Expect = 1e-43, Method: Composition-based stats. Identities = 66/175 (37%), Positives = 96/175 (54%), Gaps = 15/175 (8%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQ-------APGQHGA-----RKPRL 48 M+RYLGP+L+++RR GT + + PGQHG +KP Sbjct: 29 MSRYLGPRLRITRRLGTLIGFTRKKPTMKPLYPENPFGLRKVIPPGQHGRAKLFKKKPYE 88 Query: 49 S---DYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRM 105 S D+ ++L+ KQ++R YG+ E+Q NY + A + KG+TG LL LLE RLDN+V+R+ Sbjct: 89 SNEYDFLIRLKFKQRLRYYYGITEKQLFNYVELARKSKGSTGLVLLRLLEMRLDNIVFRL 148 Query: 106 GFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALE 160 T A ARQL+SH I+VN + V I S Q P D+++ K + V L+ Sbjct: 149 HMAPTIAAARQLISHGHILVNKKKVTIPSAQCKPKDLITAAPKIRSMELVSRFLK 203 >UniRef50_C6B8C6 RNA-binding S4 domain protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM1325 RepID=C6B8C6_RHILS Length = 146 Score = 177 bits (450), Expect = 2e-43, Method: Composition-based stats. Identities = 60/141 (42%), Positives = 86/141 (60%), Gaps = 3/141 (2%) Query: 68 LERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNG 127 QFR + EA RL+G+T ENL+ALLE RLD +VYR F T ARQ ++H ++VNG Sbjct: 7 TRFQFRRIFNEANRLRGDTSENLIALLESRLDAIVYRAKFAPTPFAARQFINHGHVIVNG 66 Query: 128 RVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFKRKPE 187 VNI+SY+ DV+ +R K+K+ + V ++ LAE R+ P ++ D KM TF R P Sbjct: 67 MRVNISSYRCKAGDVIEVRPKSKQLAVVLESVGLAE-RDVPDYIAADHNKMTATFSRVPA 125 Query: 188 RSDLSADI--NEHLIVELYSK 206 +D+ + L+VE YS+ Sbjct: 126 LADVPFAVIMEPQLVVEFYSR 146 >UniRef50_B2X1Z7 Ribosomal protein S4 n=1 Tax=Oedogonium cardiacum RepID=B2X1Z7_OEDCA Length = 2801 Score = 176 bits (446), Expect = 6e-43, Method: Composition-based stats. Identities = 63/175 (36%), Positives = 95/175 (54%), Gaps = 15/175 (8%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAID-------TKCKIEQAPGQHGA-----RKPRL 48 M+RYLGP+L++ RR G + L + + PGQHG +KP Sbjct: 1 MSRYLGPRLRIVRRLGYLVGLTRKKPSTRLLNPDARRGIRKVLPPGQHGRSKSFKKKPYE 60 Query: 49 S---DYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRM 105 S D+ ++L+ KQ++R YG+ E+Q NY ++A ++KG+TG LL LLE RLDN V+R+ Sbjct: 61 SNEYDFLIRLKLKQRIRYHYGITEKQLVNYVRQARKIKGSTGRVLLRLLEMRLDNTVFRL 120 Query: 106 GFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALE 160 T ARQL++H I VN + V+I SY P D+++ K + + L Sbjct: 121 HMAPTIRAARQLITHGHIYVNNKKVSIPSYSCKPKDIITPAPKTRSIQLLNNFLT 175 >UniRef50_P48270 30S ribosomal protein S4, chloroplastic n=6 Tax=Chlorophyceae RepID=RR4_CHLRE Length = 257 Score = 175 bits (443), Expect = 1e-42, Method: Composition-based stats. Identities = 66/174 (37%), Positives = 91/174 (52%), Gaps = 14/174 (8%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQ------APGQHGARK--------P 46 M+RYLGP+L++ RR G PGQHG K Sbjct: 1 MSRYLGPRLRVIRRIGKLRGFTRKKPFRRVFKGFGGFKGKVIPPGQHGLTKLLKTRPYDS 60 Query: 47 RLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMG 106 SDY ++L+ KQ++R YG+ ERQ NY ++A ++K +TG+ LL LE RLDN+V+R+ Sbjct: 61 SESDYLIRLKVKQRLRFNYGITERQLVNYVRKAKKIKESTGQVLLQFLEMRLDNIVFRLN 120 Query: 107 FGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALE 160 T ARQL+SH I VN + VNI SY P DV+S+ K + V L+ Sbjct: 121 MAPTIPAARQLISHGHIRVNNKKVNIPSYMCKPKDVISVAMKQRSLQLVNKNLQ 174 Score = 39.4 bits (91), Expect = 0.083, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 21/50 (42%) Query: 109 ATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAA 158 + A +L++ + VN + V +Y P D VS+R K + Sbjct: 204 TSVTAAVELITKGNVRVNNKSVKTPNYICRPRDTVSLRTKQGIKKVFLKN 253 >UniRef50_Q5C773 SJCHGC09636 protein (Fragment) n=1 Tax=Schistosoma japonicum RepID=Q5C773_SCHJA Length = 139 Score = 171 bits (434), Expect = 1e-41, Method: Composition-based stats. Identities = 71/144 (49%), Positives = 90/144 (62%), Gaps = 5/144 (3%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 MARY GP K SRR TDL + PGQHG + + +Y QL+EKQK Sbjct: 1 MARYTGPITKKSRRLKTDLVGGDKNFEM-----RPFPPGQHGRGRVQEKEYLTQLQEKQK 55 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 R YGV+E+QF YYKEAAR +G TGENLL +LE RLD+VVYR G TR ARQ+V+H Sbjct: 56 ARFTYGVMEKQFVRYYKEAARRQGKTGENLLVILESRLDSVVYRAGLARTRRGARQMVTH 115 Query: 121 KAIMVNGRVVNIASYQVSPNDVVS 144 VNG+ V++ SY+V D+++ Sbjct: 116 GHFEVNGKRVDVPSYRVEQYDIIT 139 >UniRef50_Q00NZ9 Rps4 (Fragment) n=5 Tax=Embryophyta RepID=Q00NZ9_PASCC Length = 171 Score = 163 bits (414), Expect = 2e-39, Method: Composition-based stats. Identities = 59/167 (35%), Positives = 98/167 (58%), Gaps = 14/167 (8%) Query: 16 GTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRIYGVLERQFRNY 75 GT L S ++ + +K G R S Y +L+EKQ++R YG+ ERQ Y Sbjct: 1 GTLPGLISNLKDLPSKNPRV---GSAFWGSGRKSQYCRRLQEKQRLRFHYGLTERQLLKY 57 Query: 76 YKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASY 135 + A + KG TG+ LL LLE RLDN+++R+G +T +ARQLV+H+ I+VN R+V+I SY Sbjct: 58 VRIATKAKGLTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNDRMVDIPSY 117 Query: 136 QVSPNDVVSIREKAKKQSRVKAAL-----------ELAEQREKPTWL 171 + P D+++++++ K + +K +L + + +++ PT L Sbjct: 118 RCKPRDLITVKDEQKSKDMIKKSLDSLDMIKKSLDDSSPRKKLPTHL 164 >UniRef50_C1IXJ0 Ribosomal protein S4 n=1 Tax=Picea sitchensis RepID=C1IXJ0_PICSI Length = 201 Score = 163 bits (413), Expect = 4e-39, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 98/206 (47%), Gaps = 7/206 (3%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 M+RY GP+LK+ RR + + +K + + + ++S Y ++ EKQK Sbjct: 1 MSRYRGPRLKIIRRL-------KTLPGLTSKRPKNRKDSMNRSSSRKISQYRIRPEEKQK 53 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 +R YG+ ERQ Y + A R KG+TG+ +H Sbjct: 54 LRFHYGLTERQLLKYVRIARRAKGSTGQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNH 113 Query: 121 KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEG 180 I VN +V+I SY P DV++IR++ + ++ ++ L+L ++ + P L + + +G Sbjct: 114 VHIRVNDHMVDIPSYPCKPQDVITIRDQQRLRAIIRKNLDLFQRDKLPNHLTFHSLQYKG 173 Query: 181 TFKRKPERSDLSADINEHLIVELYSK 206 + + +S INE L+VE YS+ Sbjct: 174 FINQIIDSKWISLKINELLVVEYYSR 199 >UniRef50_D0PPV5 Small ribosomal protein 4 (Fragment) n=1 Tax=Austrotaxus spicata RepID=D0PPV5_9CONI Length = 199 Score = 161 bits (407), Expect = 2e-38, Method: Composition-based stats. Identities = 61/202 (30%), Positives = 104/202 (51%), Gaps = 10/202 (4%) Query: 8 KLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRIYGV 67 +LK+ L L I + R P+ S Y ++L++KQKV Y Sbjct: 1 RLKIINCLKILLGLSKKSPNIKKPRVKKH------YRAPKPSKYPIRLKKKQKVGFHYKF 54 Query: 68 LERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNG 127 ERQ A R +G E LL LLE LDN+++++G +T AR+L +H+ I++N Sbjct: 55 TERQLLQCSHIARRSEGYIVEVLLQLLEINLDNIIFQLGMASTIPGARKLFNHRDILLNN 114 Query: 128 RVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQRE--KPTWLEVDAGKMEGT--FK 183 R+V+I SY P D++SI+++ + ++ + ++LA++ + P L + K + K Sbjct: 115 RIVDIPSYHCKPQDLISIKDQQRSRNIINKNIDLAKRDKMRVPNLLNLKKEKSQYIELVK 174 Query: 184 RKPERSDLSADINEHLIVELYS 205 + + +S INE L++E YS Sbjct: 175 KIIDSKWISLKINELLVIEYYS 196 >UniRef50_O21263 Ribosomal protein S4, mitochondrial n=1 Tax=Reclinomonas americana RepID=RT04_RECAM Length = 249 Score = 160 bits (406), Expect = 2e-38, Method: Composition-based stats. Identities = 69/248 (27%), Positives = 118/248 (47%), Gaps = 44/248 (17%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVR-AIDTKCKIEQAPGQHGARKP------------- 46 M + L K K+ + G +++ K +TK K + PG+H + Sbjct: 1 MTKRLSSKQKVYTQTGINIWGKGPFLWKNNTKDKWKNTPGEHKKKHKLLERYSPMIRGDS 60 Query: 47 ------------------RLSDY----GVQLREKQKVRRIY-GVLERQFRNYYKEAARLK 83 ++S Y QL+EKQK+R+ Y V E+QF NYY +A K Sbjct: 61 INEMNQLGYLIPKSKNEVKISYYEPRYASQLKEKQKLRKFYANVTEKQFYNYYVKAKSFK 120 Query: 84 GNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVV 143 G G+NL+ +LE RLD ++YR GF + +AR LV+HK ++VN ++ NI+SY V D++ Sbjct: 121 GKIGDNLIKMLERRLDIIIYRAGFVNSIYQARLLVNHKHVLVNNKIQNISSYLVQNGDMI 180 Query: 144 SIREKAKKQSRVKAALELAEQRE-----KPTWLEVDAGKMEGTFKRKPERSDL--SADIN 196 SI+ + R + ++ ++ +LEVD M + PE +++ ++ Sbjct: 181 SIKPEIVNLLRNQYNWDILQKSNGSFLKYLPYLEVDYKTMSCIYLYTPEMNEIYFPFQLD 240 Query: 197 EHLIVELY 204 + ++ Y Sbjct: 241 MNKVIRYY 248 >UniRef50_Q2WGC2 Ribosomal protein S4 (Fragment) n=2 Tax=Selaginella RepID=Q2WGC2_SELUN Length = 196 Score = 159 bits (403), Expect = 5e-38, Method: Composition-based stats. Identities = 57/207 (27%), Positives = 96/207 (46%), Gaps = 16/207 (7%) Query: 2 ARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKP--RLSDYGVQLREKQ 59 +R+ GP+ K+ RR G K + PG P + Y ++ EKQ Sbjct: 2 SRHRGPRAKIVRRPGRS-------PGPTRKRPAGRKPGYANQSTPTTKAPQYRIRSEEKQ 54 Query: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119 + R +G E+Q Y + A R KG+TG+ L E R DN++ R+G +T ARQ V+ Sbjct: 55 RSRLHHGPTEQQSLRYVRIAKRAKGSTGQVSLQSPETRSDNIIPRLGAASTTPGARQSVT 114 Query: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179 H+ N R +++ SY+ P D ++ R+ ++ +S ++ + EQ + Sbjct: 115 HERAPANDRAISVPSYRRKPADAIAARQ-SRCRSVGNSSNRIGEQDHSTLYPHA------ 167 Query: 180 GTFKRKPERSDLSADINEHLIVELYSK 206 G R +R + + NE L VE + + Sbjct: 168 GLAVRPVDRKWIDPNTNESLAVEYHPR 194 >UniRef50_Q6VQL8 Rps4 n=1 Tax=Psammisia dolichopoda RepID=Q6VQL8_9ERIC Length = 142 Score = 150 bits (379), Expect = 3e-35, Method: Composition-based stats. Identities = 46/98 (46%), Positives = 72/98 (73%) Query: 50 DYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGA 109 Y ++L+EKQK+R YG+ ERQ Y + A + KG+TG+ LL LLE RLDN+++R+G + Sbjct: 45 QYHIRLQEKQKLRFHYGLTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMAS 104 Query: 110 TRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIRE 147 T ARQLV+H+ ++VNGR+++I SY+ P D+++ R+ Sbjct: 105 TIPGARQLVNHRHVLVNGRIIDIPSYRCKPRDIITARK 142 >UniRef50_Q2EEX1 Plastid 30S ribosomal protein S4 n=1 Tax=Helicosporidium sp. ex Simulium jonesi RepID=RR4_HELSJ Length = 173 Score = 149 bits (377), Expect = 4e-35, Method: Composition-based stats. Identities = 55/173 (31%), Positives = 88/173 (50%), Gaps = 10/173 (5%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARK--PRLSDYGVQLREK 58 M RY GP+L++ RR G I +K + P H RK R S YG++L K Sbjct: 1 MGRYRGPRLRIIRRLGDLPLFTKKKPHIASK----RLPLGHPVRKIKRRPSIYGLRLLAK 56 Query: 59 QKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 Q+ YG+ + Q +NY K+A +G+ +NL+ LLE RLD+ +YR G +T A ARQL+ Sbjct: 57 QRCCYSYGLRDYQLKNYIKKARNAQGDPIKNLIFLLESRLDSKIYRSGIVSTMAAARQLI 116 Query: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWL 171 +H ++V+ + I SY + + ++ K +E + P ++ Sbjct: 117 THGHVLVDNIKITIPSYSCNESQILD----YKNTKLTSELIEKIKLSFNPIYV 165 >UniRef50_Q0P3J0 Mitochondrion, complete genome n=1 Tax=Ostreococcus tauri RepID=Q0P3J0_OSTTA Length = 209 Score = 143 bits (362), Expect = 3e-33, Method: Composition-based stats. Identities = 53/202 (26%), Positives = 96/202 (47%), Gaps = 10/202 (4%) Query: 8 KLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRIYGV 67 K K R+ G L+ R K + + +LS++ +QLR KQ V +YG Sbjct: 8 KGKPCRKFGAFLW---KTRTFTIKQEKAVSLANKKVNTKKLSNFALQLRAKQLVSALYGQ 64 Query: 68 LERQ-FRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVN 126 L+ Q F++ +++ + +G +LLE RLD+ + ++ F T ARQL++HK + +N Sbjct: 65 LKLQHFKHLLQQSQKYRGKLAHIFFSLLEKRLDSCLVQLKFAPTFLAARQLINHKKVCIN 124 Query: 127 GRVVNIASYQVSPNDVVSIREKAKKQ--SRVKAALELAEQREK----PTWLEVDAGKMEG 180 G ++ + P D VS + + + S V+ A L + ++ P EV+ +E Sbjct: 125 GNIITAPGVLLKPGDSVSFIPEIQTRVASNVQTACALHDSKKVLAYKPLHFEVNYKTLEA 184 Query: 181 TFKRKPERSDLSADINEHLIVE 202 F P++ I L+++ Sbjct: 185 IFLFSPQQVHYPTRIEPELVLK 206 >UniRef50_Q9G884 Ribosomal protein S4 n=1 Tax=Malawimonas jakobiformis RepID=Q9G884_9EUKA Length = 225 Score = 138 bits (349), Expect = 9e-32, Method: Composition-based stats. Identities = 50/218 (22%), Positives = 104/218 (47%), Gaps = 30/218 (13%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 M + K ++ ++ G DL+ K ++ K GQHG K + + ++ K Sbjct: 1 MTKRFKQKYRICKQIGEDLWGK-----LNKKINYNVRSGQHGKIKKKRKEIAFIYKDNNK 55 Query: 61 --------------VRRIY-GVLERQFRNYYKEAARLKGNTGEN-----LLALLEGRLDN 100 +R+ Y + ++QF N +K+ L N N L+ LLE RLD Sbjct: 56 KKINTVNKTQFIYKLRKFYSNISKKQFDNLFKKGNLLNANNKYNTNSKYLINLLERRLDT 115 Query: 101 VVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALE 160 +++R+ + ++ ARQL++H I++NG +VN++S+ V+ D + +++ ++K + K ++ Sbjct: 116 ILFRINWASSFFNARQLINHGHILINGNIVNVSSHLVNIGDKIEVKKDSQKLLK-KNLID 174 Query: 161 LAEQREK----PTWLEVDAGKMEGTFKRKPERSDLSAD 194 + ++ P+++EV+ + P S + Sbjct: 175 RIKNKQITINCPSYIEVNYNILCAIVIFNPTESFVPFP 212 >UniRef50_P26866 Ribosomal protein S4, mitochondrial n=4 Tax=Streptophytina RepID=RT04_MARPO Length = 196 Score = 137 bits (345), Expect = 3e-31, Method: Composition-based stats. Identities = 56/200 (28%), Positives = 100/200 (50%), Gaps = 16/200 (8%) Query: 7 PKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRIYG 66 + K+ R+ +++ + + K K + Q + + SD+ +QL+ +K+ YG Sbjct: 4 SRFKVCRQILENVWQT---KKLTLKQKFLISELQKQKKNKKQSDFSIQLQTIKKLSLFYG 60 Query: 67 VLERQFRNYYKEAARLKGNT----GENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKA 122 L K+ R K +T +LL +E RLD ++ R+ F +T +ARQL+SHK Sbjct: 61 NLP------IKKMQRAKTHTYIDKKNSLLFNIEKRLDVILVRLNFCSTMFQARQLISHKN 114 Query: 123 IMVNGRVVNIASYQVSPNDVVSIREKAKK--QSRVKAALELAE-QREKPTWLEVDAGKME 179 I VN + VNI +QVS D++SI+E + +S ++ + +R KP LEV+ ++ Sbjct: 115 ICVNYKKVNIPGFQVSNGDLISIQENSLDFFKSNIRKNFQTNRIRRMKPNHLEVNYKTLK 174 Query: 180 GTFKRKPERSDLSADINEHL 199 +P++ I+ L Sbjct: 175 AVVLYEPQQIQFPYKIDLDL 194 >UniRef50_Q05FK4 30S ribosomal protein S4 n=1 Tax=Candidatus Carsonella ruddii PV RepID=RS4_CARRP Length = 197 Score = 136 bits (343), Expect = 4e-31, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 88/157 (56%), Gaps = 2/157 (1%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 M + +K RREG +L S + ++ K + PG++G K ++SD+G+ LR KQK Sbjct: 1 MTKKKSKNIKFCRREGENLEFFSEKKYLE-KSRSNLTPGENGTEKGKVSDFGLILRTKQK 59 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 ++R Y + E++F+ Y + N + L+ LE RLDNV+YR F +R E+RQL+ H Sbjct: 60 IKRYYCIFEKEFKKIYFIIKKNFFNNID-LINFLERRLDNVIYRFNFSISRKESRQLIIH 118 Query: 121 KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKA 157 + VN I SY +SP DV++I +K + + Sbjct: 119 GNVFVNYFKNKIPSYLLSPGDVITINKKFLLKKYLYD 155 >UniRef50_C1KRH3 Ribosomal protein S4 n=1 Tax=Micromonas sp. RCC299 RepID=C1KRH3_9CHLO Length = 239 Score = 130 bits (327), Expect = 3e-29, Method: Composition-based stats. Identities = 60/221 (27%), Positives = 103/221 (46%), Gaps = 20/221 (9%) Query: 1 MARYLGP-KLKLSRREGTDLFLK-----SGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQ 54 M + P ++K+ R+ G L+ V +D + + RK + + + Q Sbjct: 1 MTKISSPFRMKVLRKIGVSLWPWRHMTLKQVEKLDKIVQKQSKQTSLLERKKKRTQFAYQ 60 Query: 55 LREKQKVRRIYGVLERQ-FRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAE 113 L+ KQ V+ +YG L F ++YK++ ++ G + N + LE RLD ++YR F + E Sbjct: 61 LQAKQIVKALYGNLNTSYFISFYKKSLKMIGKSNINFFSQLERRLDCILYRANFVTSFQE 120 Query: 114 ARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEV 173 ARQ++SH+ + VN +N Y V P D++S K AL + +P ++ Sbjct: 121 ARQVISHQKVCVNTVKINKPGYIVKPGDIISFVSDIKDTQ----ALSITNFLNRPATIKA 176 Query: 174 --DAGKMEGTFKRK--PER---SDLSADINEH--LIVELYS 205 D G ++ R P + + +IN H IV LY+ Sbjct: 177 LNDKGSLQSKNNRALSPTKVFYKPVHLEINYHTLTIVYLYT 217 >UniRef50_Q9TCC4 Ribosomal protein S4 n=1 Tax=Nephroselmis olivacea RepID=Q9TCC4_NEPOL Length = 238 Score = 126 bits (316), Expect = 6e-28, Method: Composition-based stats. Identities = 56/186 (30%), Positives = 94/186 (50%), Gaps = 10/186 (5%) Query: 10 KLSR-REGTDLFLKSGVRAIDTKCKIEQAPGQHGAR----KPRLSDYGVQLREKQKVRRI 64 K++R ++ T L L + + + H R + + SDY Q +Q + I Sbjct: 38 KMARIKKKTQLPLSPSFKLWQRSSTLPKTASLHIKRVQKNEQKESDYFSQFTTRQTLSSI 97 Query: 65 YG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAI 123 YG + ++Q N +A R KG+ G L+ LLE RLD ++YR F + ARQL++H I Sbjct: 98 YGNIQKKQMNNLVNQAFRRKGHAGSRLITLLESRLDVILYRASFCTSIFTARQLINHNKI 157 Query: 124 MVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQR--EKPTWLEVDAGKMEGT 181 MVNG + N ++ +SP D+VS+ + +K +++ +++ KP +LE+ M Sbjct: 158 MVNGIISNSSALLLSPGDIVSVVHNY--EMTLKNSIKSIQKKNLNKPNYLEISYNLMTIV 215 Query: 182 FKRKPE 187 F P Sbjct: 216 FLYAPT 221 >UniRef50_B2MWU8 Ribosomal protein S4 n=1 Tax=Hemiselmis andersenii RepID=B2MWU8_9CRYP Length = 275 Score = 124 bits (311), Expect = 2e-27, Method: Composition-based stats. Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 4/170 (2%) Query: 1 MARYLGPKLKLSRRE-GTDLFLKSGVRAIDTKCKIEQAPGQHGARKP--RLSDYGVQLRE 57 M + L K K+ + G L + VRAI + P ++ R+S +G L Sbjct: 1 MTKRLNSKFKVCKNIKGNRKNLWAVVRAITFRSIRILKPDSISVKQKLNRISSFGKYLNG 60 Query: 58 KQKVRRIY-GVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQ 116 KQ + + Y + E+ F++ ++A + K T + L++LLE RLD V+YR GF + ARQ Sbjct: 61 KQNLIKFYCNISEKLFQSLLQQAEKSKPKTIDKLISLLESRLDVVLYRSGFVNSLHMARQ 120 Query: 117 LVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQRE 166 L++H I +N + V + + D+V I+ + + + +R Sbjct: 121 LINHGFICINSKTVYNLNITLKSGDIVEIKRDFPIKELITILKQRVFRRN 170 >UniRef50_Q9G8X0 Ribosomal protein S4 n=1 Tax=Rhodomonas salina RepID=Q9G8X0_RHDSA Length = 206 Score = 115 bits (289), Expect = 8e-25, Method: Composition-based stats. Identities = 41/170 (24%), Positives = 79/170 (46%), Gaps = 3/170 (1%) Query: 29 DTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRIY-GVLERQFRNYYKEAARLKGNTG 87 K ++ + R+S++G L+ KQ +R Y + E+ F+ K A + T Sbjct: 25 TEKAFRLRSVRFQRKKFRRVSNFGKLLQTKQNLRFFYCNIKEKVFKKQLKNAIKSPLKTV 84 Query: 88 ENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIR- 146 + +++LE RLD +++R F + +A+Q++SH IM+N + + + ++ D + ++ Sbjct: 85 DKFISILEKRLDIILFRASFIFSLYQAKQIISHGHIMINNKTIYKLNKKLKQFDFIKLKI 144 Query: 147 EKAKKQSRVKAAL-ELAEQREKPTWLEVDAGKMEGTFKRKPERSDLSADI 195 EK K R+ + ++ P LEV F P +L I Sbjct: 145 EKNKILKRIFDRFKDKILEKTIPVHLEVSFKNFTICFLWPPSFFELYYPI 194 >UniRef50_Q7YN81 Apicoplast 30S ribosomal protein S4 n=1 Tax=Eimeria tenella RepID=RR4_EIMTE Length = 200 Score = 114 bits (287), Expect = 1e-24, Method: Composition-based stats. Identities = 44/149 (29%), Positives = 76/149 (51%), Gaps = 8/149 (5%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 M RYLGPKLK +R + TK I + K LS Y ++L EKQK Sbjct: 1 MLRYLGPKLKKLKRLNIHM-----QPEFSTKYFILNTNKYNN--KMILSFYLLELFEKQK 53 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 ++ + + E+ + Y + NL+ ++E RLDN ++ +G+ T A+A+QL+ H Sbjct: 54 LKFTFSLSEKIIKKYILFMHKYNYKKF-NLINIIEIRLDNTIFNLGYSITIAQAKQLIIH 112 Query: 121 KAIMVNGRVVNIASYQVSPNDVVSIREKA 149 VN +++ I S+ + D++++ K+ Sbjct: 113 GYFFVNFKLIKIPSFLLKKGDIITLSPKS 141 >UniRef50_UPI000196B648 hypothetical protein CATMIT_01694 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196B648 Length = 91 Score = 112 bits (281), Expect = 7e-24, Method: Composition-based stats. Identities = 47/91 (51%), Positives = 68/91 (74%), Gaps = 1/91 (1%) Query: 117 LVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREK-PTWLEVDA 175 +VSH+ + VNG+ VN+ SYQV D++++ E+A+KQ RV+ +L ++ Q + P+W+EVD+ Sbjct: 1 MVSHRGVTVNGKSVNLPSYQVKAGDIIALSERAQKQLRVQESLTVSSQMDLSPSWVEVDS 60 Query: 176 GKMEGTFKRKPERSDLSADINEHLIVELYSK 206 K G FK P+R+DL ADINE LIVELYSK Sbjct: 61 KKFSGVFKAVPDRADLPADINEALIVELYSK 91 >UniRef50_A6YEB5 Ribosomal protein S4 n=1 Tax=Chlorokybus atmophyticus RepID=A6YEB5_CHLAT Length = 267 Score = 110 bits (276), Expect = 3e-23, Method: Composition-based stats. Identities = 52/148 (35%), Positives = 78/148 (52%), Gaps = 6/148 (4%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARK-PRLSDYGVQLREKQ 59 M R K K RR ++ R + K + Q R + S+Y +L +Q Sbjct: 1 MVRKPILKFKTCRRIQKKIW---DSRKLTLKQENILLKAQVSPRGFEKQSNYSKELIARQ 57 Query: 60 KVRRIYGVLERQ-FRNYYKEAARLKGNT-GENLLALLEGRLDNVVYRMGFGATRAEARQL 117 K+ IYG L+R F +K+ R + + L+LLE RLD V+ R+ + +T +EARQL Sbjct: 58 KLSAIYGNLKRDTFIKLFKKGRRARQVKLPDTFLSLLERRLDVVLLRLKYCSTLSEARQL 117 Query: 118 VSHKAIMVNGRVVNIASYQVSPNDVVSI 145 +SHK I+VN VNI+SY + D++SI Sbjct: 118 ISHKKILVNNETVNISSYLLKNGDLISI 145 >UniRef50_Q9F8G5 Ribosomal protein S4 (Fragment) n=1 Tax=Carboxydothermus hydrogenoformans RepID=Q9F8G5_CARHY Length = 155 Score = 109 bits (274), Expect = 4e-23, Method: Composition-based stats. Identities = 54/155 (34%), Positives = 73/155 (47%), Gaps = 15/155 (9%) Query: 2 ARYLGPKLKLSRREGTDLFLKSGVRAID--TKCKIEQAPGQHGARKPRLSDYGVQLREKQ 59 RY P K+ REG +LF K D + + + P Q G +P ++Y + R K Sbjct: 6 GRYTVPSXKICSREGXNLFSKXDRXDTDXXSMARRNKGPXQXGXTRPMPTEYAPRXRXKL 65 Query: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLD-------NVVYRMGFGATRA 112 K + IYGV E QF+ A R G TGEN + LLE R D + +RA Sbjct: 66 KAKXIYGVZEVQFQTXXVMAERXXGTTGENXVVLLERRSDKHGRSDRTTL------MSRA 119 Query: 113 EARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIRE 147 ARQ+V +N R VNI SY V +V+ +E Sbjct: 120 LARQVVRLNLTPLNXRQVNILSYVVKXGEVIIPKE 154 >UniRef50_Q9XQQ7 Apicoplast 30S ribosomal protein S4 n=1 Tax=Toxoplasma gondii RepID=RR4_TOXGO Length = 198 Score = 107 bits (268), Expect = 2e-22, Method: Composition-based stats. Identities = 36/105 (34%), Positives = 62/105 (59%), Gaps = 3/105 (2%) Query: 44 RKPRLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVY 103 +K + S + +QL EKQK++ Y + E Q + Y+K LK NL+ ++E RLD ++ Sbjct: 36 KKGKTSSFRIQLLEKQKLKYNYRLKENQIKKYFKYIKLLK---IFNLIQIIELRLDATIF 92 Query: 104 RMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREK 148 R+GF + +ARQL++H I +N +V S+ ++ D++ I K Sbjct: 93 RLGFAKSINQARQLITHGFIFINSILVKKPSFILTEKDLIYINPK 137 >UniRef50_C6FG20 Ribosomal protein S4 n=2 Tax=Isoetes engelmannii RepID=C6FG20_ISOEN Length = 254 Score = 106 bits (266), Expect = 4e-22, Method: Composition-based stats. Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 12/168 (7%) Query: 4 YLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRR 63 Y P+ K RR ++++ + E ++ + S + VQLR Q++ Sbjct: 15 YHLPRFKTCRRIEENVWVWQKLTEKQKHIISELR-----RKREKQSYFSVQLRTIQRLSL 69 Query: 64 IYGVLERQFRNYYKEAARLKG-NTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKA 122 YG ++ ++A + N ++LL LE RLD ++ F +T ARQL+SHK Sbjct: 70 FYG------KSLPRKAKKHTYLNKRKSLLYYLEKRLDVILVCTHFCSTICGARQLISHKK 123 Query: 123 IMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTW 170 I VN VN ++VS D++SI E+ ++ ++ E T+ Sbjct: 124 ICVNSETVNTHGFRVSNGDLISIVEENFFLFDIREKMKTNPICEISTY 171 >UniRef50_Q0YR48 30S ribosomal protein S4 n=1 Tax=Chlorobium ferrooxidans DSM 13031 RepID=Q0YR48_9CHLB Length = 83 Score = 104 bits (260), Expect = 2e-21, Method: Composition-based stats. Identities = 35/83 (42%), Positives = 50/83 (60%) Query: 124 MVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFK 183 M+NG+ VNI SY VSP D++ R+++K V +L A + PTW++VD + F Sbjct: 1 MINGKKVNIPSYLVSPGDLIEFRQRSKNMDAVTDSLNKAPESRIPTWIQVDKANQKSVFL 60 Query: 184 RKPERSDLSADINEHLIVELYSK 206 PER ++ NE L+VELYSK Sbjct: 61 SVPERVEIQEPYNEQLVVELYSK 83 >UniRef50_P27929 37S ribosomal protein NAM9, mitochondrial n=13 Tax=Saccharomycetales RepID=NAM9_YEAST Length = 486 Score = 101 bits (252), Expect = 2e-20, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 22/142 (15%) Query: 42 GARKPRLSDYGVQLREKQKVRRIYG--VLERQFRNYYKE---------AARLKGNTGE-- 88 G S Y + KQ+ R +G + E++++ +K A+ G E Sbjct: 33 GVDLKSKSLYQQKWTAKQETRAYHGEHLTEKRWQTVFKPKLDSVAQLDASLRGGEIKETP 92 Query: 89 ---NLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSI 145 A+LE RLD ++R F ++ +ARQ + H + VNG + SY + P D+ S+ Sbjct: 93 FLLQTFAVLEKRLDFALFRAMFASSVRQARQFILHGNVRVNGVKIKHPSYTLKPGDMFSV 152 Query: 146 REKAK------KQSRVKAALEL 161 + K+ + AL++ Sbjct: 153 KPDKVLEALGAKKPSFQEALKI 174 >UniRef50_C1KRA9 Ribosomal protein S4 n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1KRA9_9CHLO Length = 261 Score = 100 bits (250), Expect = 2e-20, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 11/153 (7%) Query: 8 KLKLSRREGTDLFLKSGVR-------AIDTKCKIEQAPGQHGARKPR-LSDYGVQLREKQ 59 K K R+ ++ + A + + ++ R P+ + YG+ L Sbjct: 6 KYKTLRQLRIPVWPWRKLNPKHTAWMAKEVRRAKKKVTKPLVPRPPKTPTFYGMTLLRI- 64 Query: 60 KVRRIYGVLERQ-FRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 ++ +YG F N + +A + + + L LLE RLD ++YR F + + Q + Sbjct: 65 -LKTVYGPSNTSTFVNLFSKAKKTSVPSLQAFLQLLEMRLDVILYRARFATSYLQLHQWI 123 Query: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKK 151 +H + VNG+VV +SP DVVSI +A Sbjct: 124 AHGKVCVNGQVVTTKGRLLSPGDVVSIHPQAVS 156 >UniRef50_Q6E781 Ribosomal protein S4 n=1 Tax=Saprolegnia ferax RepID=Q6E781_SAPFE Length = 266 Score = 100 bits (249), Expect = 4e-20, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 93/224 (41%), Gaps = 28/224 (12%) Query: 9 LKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR-------------KPRLSDYGVQL 55 + +R+ F + + K P + + + + Y +L Sbjct: 40 FRKTRKLDFIKFQVKMKKELKKAFKTSYKPNNNTSILSLLKKINQFKRPEKKQKLYKERL 99 Query: 56 REKQKVRRIYGVL-ERQFRNYYK--EAARLKGNTGENLLALLEGRLDNVVYRMGFGATRA 112 KQ+ + YG + E Q +N + + N + +LE RLD +++R T Sbjct: 100 FAKQQFKNFYGCIPEYQLKNLFNYLKNRNNNNNIIHKFIIVLESRLDMIIFRSKIAKTIF 159 Query: 113 EARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIRE--------KAKKQSRVKAALELAE- 163 EA+Q+++H I VN +++ ++Y + D++++ KK+ + + EL + Sbjct: 160 EAKQIINHGKIKVNNKIITSSNYILKRGDIITLNNFKILKKFYYLKKKKNFQKSYELIKT 219 Query: 164 -QREKPTWLEVDAGKMEGTFKRKPERSDL--SADINEHLIVELY 204 ++ K +++ + F R+P ++ D++ L+ E + Sbjct: 220 VRKNKVNYIQFNNKYNICIFLRQPLFKEIKYPFDLDLKLVDEFF 263 >UniRef50_D2JP76 Ribosomal protein S4 n=1 Tax=Synedra acus RepID=D2JP76_9STRA Length = 246 Score = 98.4 bits (244), Expect = 1e-19, Method: Composition-based stats. Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 11/143 (7%) Query: 51 YGVQLREKQKVRRIYGVLERQFRNYY--------KEAARLKGNTGENLLALLEGRLDNVV 102 Y L KQK YG L+++F K +LK LL+LLE RLD ++ Sbjct: 78 YKTILHNKQKTSFYYGGLKKKFWKKQINHVLTRKKSFFKLKSFKHLALLSLLERRLDVLL 137 Query: 103 YRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELA 162 YR F + ARQL+ + +N V+ +S ++ ND VS+ + +K V L+ + Sbjct: 138 YRAHFAPSIKYARQLIQQGHVNLNNSVITESSVRLKNNDKVSLNKISKN--LVYDNLKNS 195 Query: 163 EQREKPT-WLEVDAGKMEGTFKR 184 P +L ++ E F Sbjct: 196 TLWPLPPKYLAINYKTFEIIFTD 218 >UniRef50_P46743 Ribosomal protein S4, mitochondrial n=1 Tax=Prototheca wickerhamii RepID=RT04_PROWI Length = 511 Score = 97.6 bits (242), Expect = 2e-19, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 3/117 (2%) Query: 46 PRLSDYGVQLREKQKVRRIYGVLE-RQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYR 104 + +Y L +K++ YG + +Q +A + G +N +L+E RLD V+YR Sbjct: 151 SKSREYLEILLCVKKLKMFYGFIPLKQLHKILVQAKAMPGYFSKNFFSLIEKRLDVVLYR 210 Query: 105 MGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREK--AKKQSRVKAAL 159 GF T ARQ H I VN +V I S + D++S + + + K + +K L Sbjct: 211 SGFTKTIVAARQACRHSQIYVNSKVCRIPSTILESGDIISYKNQLDSLKTAEIKNNL 267 >UniRef50_Q8M1G7 Ribosomal protein S4 n=1 Tax=Chaetosphaeridium globosum RepID=Q8M1G7_CHAGL Length = 176 Score = 96.4 bits (239), Expect = 5e-19, Method: Composition-based stats. Identities = 42/195 (21%), Positives = 81/195 (41%), Gaps = 28/195 (14%) Query: 8 KLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRIYGV 67 K K+SR+ G +++ + + ++ R S++ + + +K+R YG Sbjct: 2 KFKISRQIGENIWQTKKLTTRQKRILLKI------RRPSAKSNFFQRFQTFRKLRIFYGT 55 Query: 68 LERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNG 127 +Q L +E RLD ++ RM F + + ARQ ++H I VN Sbjct: 56 KPKQ------------------SLLNMEKRLDVILVRMNFCSNLSTARQWINHGFIKVNF 97 Query: 128 RVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAE--QREKPTWLEVDAGKMEGTFKRK 185 V I S ++ D+VS+ + VK ++ ++ K + LEV+ G + Sbjct: 98 SKVTIPSMLLTNGDIVSVCKNF--IPFVKKNMQKIRVFKKHKLSHLEVNYKLCIGILLFE 155 Query: 186 PERSDLSADINEHLI 200 P+ + ++I Sbjct: 156 PQSVIFPSYFERNII 170 >UniRef50_Q2TUD0 Ribosomal protein S4 n=1 Tax=Dictyota dichotoma RepID=Q2TUD0_DICDH Length = 237 Score = 96.4 bits (239), Expect = 5e-19, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 12/131 (9%) Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 VRR YG L + K T ++ + LE RL +YR+GF ++ E++Q + H Sbjct: 85 VRRFYGDLRFEMLKSM----CNKAKTVDSFMKCLESRLGINLYRLGFFSSVFESKQAILH 140 Query: 121 KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVK--------AALELAEQREKPTWLE 172 ++VNG + Y + P D++ K + + + + + + P W++ Sbjct: 141 GKVLVNGVKITFDHYILKPGDLIEFCPKFRSKLKSRMITRRKNINYSDRLKLNPTPFWIQ 200 Query: 173 VDAGKMEGTFK 183 D + Sbjct: 201 TDYSNLSFIIL 211 >UniRef50_C5DZN7 ZYRO0G05918p n=1 Tax=Zygosaccharomyces rouxii RepID=C5DZN7_ZYGRO Length = 479 Score = 95.3 bits (236), Expect = 1e-18, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 22/138 (15%) Query: 46 PRLSDYGVQLREKQKVRRIYG--VLERQFRNYYKEA--------ARLKGNTGE------N 89 + Y + KQ+ R +G + E++++ ++ A LKG E Sbjct: 37 RSKTLYQQKWTAKQETRAYHGEHLTEKRWQFFFNPKLDSVAQLDASLKGGKEEETPFLLQ 96 Query: 90 LLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKA 149 A+LE RLD V+R F ++ +ARQ + + VNG + +Y + P DV +R Sbjct: 97 TFAVLEKRLDFAVFRAMFASSVRQARQFILQGNVFVNGIKIAHPNYTLKPGDVFRVRPSK 156 Query: 150 K------KQSRVKAALEL 161 K+ V+ +L++ Sbjct: 157 VLEALGAKKPSVQESLKV 174 >UniRef50_UPI000169316E RpsD n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI000169316E Length = 82 Score = 93.0 bits (230), Expect = 5e-18, Method: Composition-based stats. Identities = 38/83 (45%), Positives = 55/83 (66%), Gaps = 2/83 (2%) Query: 124 MVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFK 183 VNG+ V+IASYQVS DV+ +RE+++ +K ALE + P +LE + +EG F Sbjct: 2 TVNGKKVDIASYQVSVGDVIGLRERSRNLKSIKEALE--NRNFLPAYLEFNEQALEGKFI 59 Query: 184 RKPERSDLSADINEHLIVELYSK 206 R PERS+L+ +I+E IVE YS+ Sbjct: 60 RLPERSELAQEIDEKQIVEFYSR 82 >UniRef50_B2XX60 Ribosomal protein S4 n=2 Tax=Polysphondylium pallidum RepID=B2XX60_POLPA Length = 268 Score = 93.0 bits (230), Expect = 6e-18, Method: Composition-based stats. Identities = 39/178 (21%), Positives = 74/178 (41%), Gaps = 16/178 (8%) Query: 32 CKIEQAPGQHGA-RKPRLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAA---------- 80 ++Q H R+ +++ V L+ +V + R+FR YYK Sbjct: 69 RILKQIKQNHWRIRQTKITLKKVNLKNMNRVYYRKFSIYRKFRYYYKNLKIRQIKNIYSQ 128 Query: 81 -RLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSP 139 + + + +LE RLD+++ R F T AR + + I VNG ++N +Y + Sbjct: 129 LKRNKKKVKIFMEILECRLDSILVRSNFFQTMYSARHFIKYNHISVNGILINKINYNTNI 188 Query: 140 NDVVSIREKAKKQSRVKAALELAEQRE----KPTWLEVDAGKMEGTFKRKPERSDLSA 193 D++ + + K K +L + + P +LE D + T KP + ++ Sbjct: 189 GDLIGLNKNDIKLKIKKILKKLVRKHKFISTSPAFLETDYRLLLTTLIYKPRKEEIKY 246 >UniRef50_P0C5Y3 Ribosomal protein S4, mitochondrial n=3 Tax=Dictyostelium RepID=RT04_DICCI Length = 325 Score = 92.6 bits (229), Expect = 8e-18, Method: Composition-based stats. Identities = 38/111 (34%), Positives = 65/111 (58%), Gaps = 5/111 (4%) Query: 61 VRRIYGVLE-RQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119 R+ Y L+ +QF+ YK + KGN + ++ LE R+D ++ R GF + EARQL++ Sbjct: 114 FRKFYINLKLKQFKRLYK---KYKGN-EKIIIQQLEKRIDMILLRSGFVRSIYEARQLIN 169 Query: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTW 170 HK I+VNG + I SY ++ D++SI+E + KQ+ + ++ + P Sbjct: 170 HKHILVNGNIARIPSYTLNVGDIISIKEGSHKQNLIHRLKKILLPKVVPEH 220 >UniRef50_C4R204 Mitochondrial ribosomal component of the small subunit n=1 Tax=Pichia pastoris GS115 RepID=C4R204_PICPG Length = 469 Score = 91.8 bits (227), Expect = 1e-17, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 26/153 (16%) Query: 34 IEQAPGQHGARKPRLSDYGVQLREKQKVRRIYG--VLERQFRNYYKE---------AARL 82 +Q PG +G S Y + K + R +G + E ++++ + A+ Sbjct: 30 KKQRPGFNGQ-----SLYQQKWNSKAETRAYHGEHLRESKWQHIFSPKLQGVAQLDASLQ 84 Query: 83 KGNTGE-----NLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQV 137 GNT E A+LE RLD ++R F ++ +ARQ + HK + VNG V+ +Y++ Sbjct: 85 GGNTDETPMMLQTFAVLEKRLDVALFRAMFASSVRQARQYIIHKYVSVNGVVMRHPNYEL 144 Query: 138 SPNDVVSIREKAKKQSRVKAALELAEQREKPTW 170 P DV S+R +V AL A+ K ++ Sbjct: 145 KPGDVFSVRPD-----KVLEALGKAKPDLKTSY 172 >UniRef50_Q2TUL0 Ribosomal protein S4 n=11 Tax=Phaeophyceae RepID=Q2TUL0_FUCVE Length = 271 Score = 91.4 bits (226), Expect = 2e-17, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 60/150 (40%), Gaps = 24/150 (16%) Query: 61 VRRIYGVL-ERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119 +RR YG L ++F+ K ++ KG++ + L+ LE RLD +YR+GF + +RQ + Sbjct: 100 IRRFYGDLGHKKFKKSCKLLSKSKGSS-QKLIGNLEKRLDVTLYRLGFFHSILYSRQAIL 158 Query: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQR-------------- 165 H I+VNG+ +N ++ + D V + + R Sbjct: 159 HNKIIVNGKFINNGNFMLRKGDFVEFCPTQRINIQASLLSRYKHFRSFRMRMERWRLSYR 218 Query: 166 --------EKPTWLEVDAGKMEGTFKRKPE 187 P W++ D + E Sbjct: 219 FKYDLHLQPTPAWIQTDYSNLSFILTSDVE 248 >UniRef50_Q3S297 Ribosomal protein S4 n=1 Tax=Thalassiosira pseudonana RepID=Q3S297_THAPS Length = 248 Score = 91.0 bits (225), Expect = 2e-17, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 68/163 (41%), Gaps = 12/163 (7%) Query: 54 QLREKQKVRRIYGVLERQFRN-----YYKEAARLKGNTGENLLALLEGRLDNVVYRMGFG 108 L+ KQ++ YG L + + KE+ + L+ LE RLD ++YR F Sbjct: 88 NLQNKQRLSLFYGNLRKSYLKKLVKESLKESKHINSQATVLLIEKLETRLDTILYRTHFC 147 Query: 109 ATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKP 168 + A+QL+SH+ I VN ++V + + D++++ + V + + +E P Sbjct: 148 HSFRSAKQLISHQKIYVNNKIVKHNFHALKKGDIITLDKSITN--FVASNILKSEMWPIP 205 Query: 169 T-WLEVDAGKMEGTFKRKPE----RSDLSADINEHLIVELYSK 206 ++ ++ + S I+ + + Y K Sbjct: 206 PKHFYINYRTLQILIIEDIKYSNCFSYYPFWIDFNSFIRFYEK 248 >UniRef50_C0NY83 NAM9+ protein n=3 Tax=Onygenales RepID=C0NY83_AJECG Length = 490 Score = 90.7 bits (224), Expect = 3e-17, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 64/176 (36%), Gaps = 43/176 (24%) Query: 9 LKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRIYG-- 66 +K RR L + V + K A H + K + + + K R +G Sbjct: 9 VKAGRRPAKVLQSWNKVNLYNLK----HASIPHTSSK---TFFQQKWIAKSLARTYHGEQ 61 Query: 67 VLERQFRNYY----------------------KEAARLKGNTG------------ENLLA 92 V E Q+ + + A R G G + A Sbjct: 62 VRESQWEKMFSRRLRSVVPMDANYLARNDGSFESAGRGSGLEGVGPRRAPLTPHMQMTFA 121 Query: 93 LLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREK 148 LE RLD ++R F ++ +ARQ V H ++ VNG+ + Y ++P D+ + + Sbjct: 122 PLERRLDVAIFRAMFASSTRQARQFVIHGSVTVNGKKMRYPGYLLNPGDLFQVDPE 177 >UniRef50_B2XXA8 Ribosomal protein S4 n=1 Tax=Dictyostelium fasciculatum RepID=B2XXA8_9MYCE Length = 276 Score = 90.3 bits (223), Expect = 3e-17, Method: Composition-based stats. Identities = 38/151 (25%), Positives = 65/151 (43%), Gaps = 5/151 (3%) Query: 58 KQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQL 117 K+ + + +QF+ Y+ + + + +LEGRLD+V+ R T AR Sbjct: 116 KRFLHYYKNISIKQFKKLYRILKKKQ-QKLQKFWEILEGRLDSVLVRSQLVRTMYAARHF 174 Query: 118 VSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREK----PTWLEV 173 + +K I VNG+V +Y + D + +R K K + EL + P +LE Sbjct: 175 IKYKHISVNGKVKTRLNYLIKIGDFIGMRRKKMKVATKIKLFELVRKGLMIGIGPAYLET 234 Query: 174 DAGKMEGTFKRKPERSDLSADINEHLIVELY 204 D + T KP+ S+++ E Y Sbjct: 235 DFRLLLTTMVYKPKMSEINYVFTVKNYKEFY 265 >UniRef50_C5JVX1 30S ribosomal subunit S4 n=4 Tax=Onygenales RepID=C5JVX1_AJEDS Length = 498 Score = 89.5 bits (221), Expect = 7e-17, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 62/176 (35%), Gaps = 43/176 (24%) Query: 9 LKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRIYG-- 66 ++ RR L + V + K A H + K + + + K R +G Sbjct: 9 VRAGRRPAKVLQSWNKVNLYNLK----HASIPHTSNK---TFFQQKWIAKSLARTYHGEQ 61 Query: 67 VLERQFRNYY----------------------KEAARLKGNTG------------ENLLA 92 V E Q+ + + A R G G + A Sbjct: 62 VRESQWEKMFSRRLRSVVPMDANYLARNDGSFESAGRGSGVEGVGPRKAPLTPHMQMTFA 121 Query: 93 LLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREK 148 LE RLD ++R F ++ +ARQ V H + VNG + Y ++P D+ + + Sbjct: 122 PLERRLDVAIFRAMFASSTRQARQFVVHGFVTVNGTKMRHPGYLLNPGDLFQVDPE 177 >UniRef50_P46755 Ribosomal protein S4, mitochondrial n=1 Tax=Acanthamoeba castellanii RepID=RT04_ACACA Length = 374 Score = 88.7 bits (219), Expect = 1e-16, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 81/168 (48%), Gaps = 6/168 (3%) Query: 43 ARKPRLSDYGVQLREKQKVRRIYGVLER-QFRNYYKEA-ARLKGNTGENLLALLEGRLDN 100 + + S + ++ +KV +G + F Y A A KGN+ L +LEGRL+N Sbjct: 205 KKTKKWSLFALKNIYYKKVSLFFGFRKVVDFFKVYNLAGALAKGNSFAVFL-MLEGRLEN 263 Query: 101 VVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALE 160 + R+ + ++ + + + VN +++N SY ++ N++VS +K K+ + Sbjct: 264 FLMRLNLFPSIYFIKKFIEYGNVFVNNKIINYTSYHLNFNEIVSFNKKYYKKLYFFIKSK 323 Query: 161 LAEQR---EKPTWLEVDAGKMEGTFKRKPERSDLSADINEHLIVELYS 205 L +++ P+++EVD + R P+ L+ ++ +L + S Sbjct: 324 LRQRKVIINAPSFVEVDYKLLVAMLIRNPDELALTKPLSFNLYTKFLS 371 >UniRef50_A6QVF5 Putative uncharacterized protein n=2 Tax=Onygenales RepID=A6QVF5_AJECN Length = 453 Score = 88.4 bits (218), Expect = 1e-16, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 62/174 (35%), Gaps = 41/174 (23%) Query: 13 RREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSD--YGVQLREKQKVRRIYG--VL 68 RR +G + + + K+ +H + S + + K R +G V Sbjct: 46 RR---APIGWAGYKVLQSWNKVNLYNLKHASIPHSSSKTFFQQKWIAKSLARTYHGEQVR 102 Query: 69 ERQFRNYY----------------------KEAARLKGNTG------------ENLLALL 94 E Q+ + + A R G G + A L Sbjct: 103 ESQWEKMFSRRLRSVVPMDANYLARNDGSFESAGRGSGLEGVGPRRAPLTPHMQMTFAPL 162 Query: 95 EGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREK 148 E RLD ++R F ++ +ARQ V H ++ VNG+ + Y ++ D+ + + Sbjct: 163 ERRLDVAIFRAMFASSTRQARQFVIHGSVTVNGKKMRYPGYLLNSGDLFQVDPE 216 >UniRef50_Q9T225 Ribosomal protein S4 n=3 Tax=Phytophthora RepID=Q9T225_PHYIN Length = 153 Score = 88.0 bits (217), Expect = 2e-16, Method: Composition-based stats. Identities = 34/148 (22%), Positives = 73/148 (49%), Gaps = 7/148 (4%) Query: 5 LGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRL----SDYGVQLREKQK 60 L P+ K+ + ++ + +++K ++ + + +L EKQ+ Sbjct: 4 LKPRNKICFQNNKNIHKNLNLLKLNSKKWNLFKKKLRYRKEIKPEKRKKFFQKRLFEKQQ 63 Query: 61 VRRIYGVL-ERQFRNYYKEAARL--KGNTGENLLALLEGRLDNVVYRMGFGATRAEARQL 117 R YG + E Q +N +++ ++ K N + + LLE RLD + R+ T +A+QL Sbjct: 64 FRNFYGCIHEYQLKNIFRKLSKKDNKINIFKKFIILLESRLDINLVRLKLVKTIFKAKQL 123 Query: 118 VSHKAIMVNGRVVNIASYQVSPNDVVSI 145 ++HK I VN ++++ ++ + D++ I Sbjct: 124 INHKKIKVNNKIISKPNFILQKGDIIHI 151 >UniRef50_Q0YR49 Ribosomal protein S4 n=1 Tax=Chlorobium ferrooxidans DSM 13031 RepID=Q0YR49_9CHLB Length = 84 Score = 84.9 bits (209), Expect = 2e-15, Method: Composition-based stats. Identities = 37/79 (46%), Positives = 51/79 (64%), Gaps = 5/79 (6%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGA-RKPRLSDYGVQLREKQ 59 MAR+ G K+SRR G L K+ + PGQHG RK ++S+Y +QLREKQ Sbjct: 1 MARFRGSITKVSRRLGVALTPKAEK----YLERRPFPPGQHGQSRKGKVSEYALQLREKQ 56 Query: 60 KVRRIYGVLERQFRNYYKE 78 K++ IYG+LE+QFRNY+ + Sbjct: 57 KMKYIYGILEKQFRNYFMK 75 >UniRef50_Q2H0I0 Putative uncharacterized protein n=1 Tax=Chaetomium globosum RepID=Q2H0I0_CHAGB Length = 382 Score = 84.5 bits (208), Expect = 2e-15, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 6/94 (6%) Query: 81 RLKGNTG------ENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIAS 134 R KGN+ + + A +E RLD ++R F ++ +ARQ V H A+ VNG+ + Sbjct: 34 RNKGNSTNPTPYMQMMFAPMERRLDIAIFRALFASSARQARQFVLHGAVTVNGKKMTYPG 93 Query: 135 YQVSPNDVVSIREKAKKQSRVKAALELAEQREKP 168 Y ++P D+ + + + K + ++ P Sbjct: 94 YLLNPGDMFQVEIERVMAATGKPKRKSGGSQKAP 127 >UniRef50_B6HQM4 Pc22g11690 protein n=15 Tax=Eurotiomycetidae RepID=B6HQM4_PENCW Length = 457 Score = 84.1 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 33/58 (56%) Query: 91 LALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREK 148 A LE RLD ++R F ++ +ARQ V H A+ VNG+ + SY ++P D+ + Sbjct: 118 FAPLERRLDVAIFRALFASSARQARQFVIHGAVTVNGQKMKHPSYLLNPGDLFQVDPD 175 >UniRef50_C7ZPJ0 Putative uncharacterized protein n=2 Tax=Nectriaceae RepID=C7ZPJ0_NECH7 Length = 511 Score = 84.1 bits (207), Expect = 3e-15, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 35/59 (59%) Query: 88 ENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIR 146 + A LE RLD V+R F ++ +ARQ + H A+ VNG+ + SY ++P D+ ++ Sbjct: 154 QMTFAPLERRLDTAVFRAMFASSVRQARQFIIHGAVKVNGKKMVHPSYALNPGDMFQVQ 212 >UniRef50_O60063 Putative 40S ribosomal protein S4-like n=2 Tax=Schizosaccharomyces RepID=YBB1_SCHPO Length = 327 Score = 81.8 bits (201), Expect = 1e-14, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 11/113 (9%) Query: 48 LSDYGVQLREKQKVRRIYG--VLERQFRNYYKEAARLKGNTGENLL---------ALLEG 96 + Y + K++ R +G + E Q +N ++ ++ +N L A LE Sbjct: 37 RTLYQKKWNAKKETRSYHGPQLREYQLKNAFRPKLEGVISSLDNKLPIPFMNQTYAFLES 96 Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKA 149 RLD ++R F ++ +ARQLV H + VNG+ A Q+ P D+V++ +K+ Sbjct: 97 RLDMSIHRALFASSALQARQLVLHGKVHVNGKPERRAYRQLLPGDLVTVDQKS 149 >UniRef50_Q09MH6 Ribosomal protein S4 n=10 Tax=Citrus RepID=Q09MH6_CITSI Length = 116 Score = 81.8 bits (201), Expect = 1e-14, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 7/84 (8%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 M+RY GP+ K RR G + + +K + ++ R + S Y ++L EKQK Sbjct: 1 MSRYRGPRFKKIRRLG-------ALPGLTSKRPRAGSDFRNQLRSVKKSQYRIRLEEKQK 53 Query: 61 VRRIYGVLERQFRNYYKEAARLKG 84 +R YG+ ERQ N + + KG Sbjct: 54 LRFHYGLTERQLLNMFVSPEKPKG 77 >UniRef50_B2W5M8 Putative uncharacterized protein n=2 Tax=Pleosporineae RepID=B2W5M8_PYRTR Length = 426 Score = 81.0 bits (199), Expect = 2e-14, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 53/139 (38%), Gaps = 37/139 (26%) Query: 48 LSDYGVQLREKQKVRRIYG--VLERQFRNYYK---------------------------- 77 + + + K R +G + E+++++ ++ Sbjct: 39 RTYFQQKWTAKASTRAYHGEHIREKKWKHMFRRNLPAVVAMDHRYLARHDGSEQAAGRGM 98 Query: 78 ---EAARLKGNTGENLLAL----LEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVV 130 +A + + + + LE RLD ++R F ++ +ARQ V H + VNG+ + Sbjct: 99 GADQAEKARTPPMTPYMQMAYYPLERRLDTAIFRALFASSVRQARQFVVHGLVKVNGKKM 158 Query: 131 NIASYQVSPNDVVSIREKA 149 Y ++P D+ + + Sbjct: 159 IYPGYALNPGDMFQVEPSS 177 >UniRef50_Q8W9R0 Ribosomal protein S4 n=1 Tax=Mesostigma viride RepID=Q8W9R0_MESVI Length = 270 Score = 79.5 bits (195), Expect = 6e-14, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 4/111 (3%) Query: 40 QHGARKPRLSDYGVQLREKQKVRRIYGVLE-RQFRNYYKEAARLKGNTGENLLALLEGRL 98 + K LS +G +L+ K+ + IYG L Q++N + + K + LE RL Sbjct: 33 RKNQLKRPLSSFGKRLQTKKALEAIYGKLSIPQWKNIISKKNKPKVTS---FFLNLERRL 89 Query: 99 DNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKA 149 D V+ + F ++ ARQ + H+ I VN ++V + D++S+ Sbjct: 90 DRVICQARFASSSNMARQWILHEKIFVNNQLVTYPGTILKNGDIISLSPDM 140 >UniRef50_Q31708 Ribosomal protein S4, mitochondrial n=44 Tax=Magnoliophyta RepID=RT04_ARATH Length = 362 Score = 79.1 bits (194), Expect = 8e-14, Method: Composition-based stats. Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 14/146 (9%) Query: 45 KPRLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYR 104 K L+ Y +QL+ +K+ YG L + K + L LE R D + R Sbjct: 60 KKYLTSY-IQLQTTRKLPFFYGDLP-----ITEMHRGTKRTSYIPFLLNLETRFDVIPLR 113 Query: 105 MGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQ 164 + F T +ARQL+SH+ + VN +V+I +++S D++S +E A+ E+ Sbjct: 114 LYFLETIPQARQLISHRRVCVNKGMVSITHFKLSHGDIISFQEN--------NAIIRGEE 165 Query: 165 REKPTWLEVDAGKMEGTFKRKPERSD 190 + + E+ K+ G +P R Sbjct: 166 IRRSFYKEILVEKIIGKLLHQPLRMW 191 >UniRef50_Q6CF39 YALI0B10494p n=1 Tax=Yarrowia lipolytica RepID=Q6CF39_YARLI Length = 571 Score = 78.7 bits (193), Expect = 1e-13, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 6/91 (6%) Query: 80 ARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSP 139 +LK LE RLD V+R F A+ +A Q + + VNG + ASY + P Sbjct: 107 KKLKTPFAMQTFVHLEKRLDFAVFRSMFAASIRQAGQFIRQGNVTVNGVKIKHASYTLKP 166 Query: 140 NDVVSIREKA------KKQSRVKAALELAEQ 164 D++S++ + K + V+ A+++ + Sbjct: 167 GDLISVKPEKVLFAAGKAKPSVEEAVKIDNR 197 >UniRef50_B2B283 Predicted CDS Pa_6_5850 n=1 Tax=Podospora anserina RepID=B2B283_PODAN Length = 449 Score = 78.3 bits (192), Expect = 1e-13, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 88 ENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIRE 147 + A E RLD V+R F ++ +ARQ V H A+ VNG+ + Y ++P D+ + Sbjct: 128 QMTFAPQERRLDISVFRALFASSARQARQFVIHGAVKVNGKKMQHPGYLLNPGDLFQVDP 187 Query: 148 K 148 + Sbjct: 188 E 188 >UniRef50_A7F6V8 Putative uncharacterized protein n=2 Tax=Sclerotiniaceae RepID=A7F6V8_SCLS1 Length = 425 Score = 77.2 bits (189), Expect = 3e-13, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 30/52 (57%) Query: 94 LEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSI 145 +E RLD ++R F ++ +ARQ V H + VNG+ + Y ++P D+ + Sbjct: 123 IERRLDTAIFRALFASSTRQARQFVVHGKVKVNGKKMPYPGYLLNPGDMFQV 174 >UniRef50_B9WLL6 Mitochondrial ribosome protein, small subunit n=7 Tax=Saccharomycetales RepID=B9WLL6_CANDC Length = 461 Score = 76.8 bits (188), Expect = 4e-13, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 64/164 (39%), Gaps = 23/164 (14%) Query: 49 SDYGVQLREKQKVRRIYG--VLERQFRN---------YYKEAARLKGN------TGENLL 91 + Y + K + R +G + E++F+N Y + A LKG+ Sbjct: 40 TLYQQKWAAKTETRNYHGQQIKEKRFKNVLFDSNLKTYSQLDASLKGHDVAPTPITLQTY 99 Query: 92 ALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKK 151 LE RL+ ++R F ++ +ARQ + + VNG V+ S+ + DV S+ + Sbjct: 100 GTLEKRLEIALFRSMFASSVRQARQFILGGYVKVNGVVIKHPSFPLQSGDVFSVDPEKVL 159 Query: 152 QSRVKAALELAEQREKPTWLEVDAGKMEGTFKRKPERSDLSADI 195 + K L + L VD +++ E I Sbjct: 160 FALGKTKPSLEKA------LSVDKKQIKKWNNYVFEAKQNPEKI 197 >UniRef50_Q0W1V5 30S ribosomal protein S4P n=1 Tax=uncultured methanogenic archaeon RC-I RepID=RS4_UNCMA Length = 205 Score = 75.6 bits (185), Expect = 9e-13, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 37/71 (52%) Query: 67 VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVN 126 V + Q KE A+L+ + ++E RL ++YR GF + +ARQ + H I +N Sbjct: 81 VKKLQTLGILKEDAKLEDVLALKVDDIMERRLQTIIYRKGFANSIKQARQFIVHGHISLN 140 Query: 127 GRVVNIASYQV 137 GR + + Y V Sbjct: 141 GRKITVPGYLV 151 >UniRef50_B1L795 30S ribosomal protein S4P n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=RS4_KORCO Length = 166 Score = 75.6 bits (185), Expect = 1e-12, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 6/73 (8%) Query: 92 ALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKK 151 LE RL +V+R GF + ARQL++H I VNGR + SY V I E+ K Sbjct: 98 QFLERRLQTIVWRKGFAKSPYMARQLITHGHIRVNGRRIRQPSYLVK------IEEEDKI 151 Query: 152 QSRVKAALELAEQ 164 + + LE+ ++ Sbjct: 152 ECLHPSCLEVEKE 164 >UniRef50_B8PNL6 Predicted protein n=2 Tax=Agaricomycetes RepID=B8PNL6_POSPM Length = 345 Score = 72.9 bits (178), Expect = 5e-12, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 59/148 (39%), Gaps = 42/148 (28%) Query: 44 RKPRLSDYGVQLREKQKVRRIYG--VLERQFRNYY------------------------- 76 + S Y + K +R +G + E+ F+ +Y Sbjct: 41 TRTNRSLYQQRWVSKALLRAYHGDYINEKIFKRWYLPQTLPDVRETLSTPLLPRESVNKW 100 Query: 77 --------KEAARLK-------GNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHK 121 KEA RL+ G + +E R+D +++R F + EAR++V H Sbjct: 101 ALREDAAQKEAKRLQNEREKGLAPVGSLMFREVERRIDVLLFRACFAHSVYEARRMVVHG 160 Query: 122 AIMVNGRVVNIASYQVSPNDVVSIREKA 149 +++NG+ + +++P D+ S+ KA Sbjct: 161 DVLLNGKKHTNPNTRLAPGDMFSVDPKA 188 >UniRef50_A7IAH7 30S ribosomal protein S4P n=5 Tax=Methanomicrobiales RepID=RS4_METB6 Length = 185 Score = 72.9 bits (178), Expect = 7e-12, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 30/52 (57%) Query: 94 LEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSI 145 LE RL +VYR G + +ARQLV+H I + GR V + Y V+ + +I Sbjct: 106 LERRLQTLVYRKGLARSPKQARQLVTHGHIAIGGRRVTVPGYLVTRGEETTI 157 >UniRef50_UPI0001699071 30S ribosomal protein S4 n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001699071 Length = 103 Score = 72.6 bits (177), Expect = 8e-12, Method: Composition-based stats. Identities = 41/64 (64%), Positives = 49/64 (76%) Query: 143 VSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFKRKPERSDLSADINEHLIVE 202 VSIREKAKKQ R++ AL LAEQ W+EVD M+G FKR P+R+DL A+INE L+VE Sbjct: 40 VSIREKAKKQVRIQGALSLAEQYGFVDWVEVDPKAMKGVFKRVPDRADLPAEINEQLVVE 99 Query: 203 LYSK 206 LYSK Sbjct: 100 LYSK 103 >UniRef50_C3N052 30S ribosomal protein S4P n=29 Tax=Archaea RepID=RS4_SULIA Length = 181 Score = 72.2 bits (176), Expect = 1e-11, Method: Composition-based stats. Identities = 21/47 (44%), Positives = 27/47 (57%) Query: 93 LLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSP 139 LLE RL +VY+ G T +ARQL+ H I VNG+ V Y V+ Sbjct: 101 LLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNV 147 >UniRef50_Q7SA90 Predicted protein n=3 Tax=Fungi/Metazoa group RepID=Q7SA90_NEUCR Length = 468 Score = 71.8 bits (175), Expect = 1e-11, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 15/81 (18%) Query: 80 ARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRV---------- 129 ++ + A LE RLD ++R F ++ +ARQ+V H A+ VNG+ Sbjct: 126 RKVPTPYEQMTFAPLERRLDIAIFRALFASSARQARQMVVHGAVTVNGKKACTPSQRSNT 185 Query: 130 -----VNIASYQVSPNDVVSI 145 + Y ++P D+ + Sbjct: 186 ESHNTMKHPGYLLNPGDLFQV 206 >UniRef50_Q46GC8 30S ribosomal protein S4P n=3 Tax=Methanosarcina RepID=RS4_METBF Length = 216 Score = 71.8 bits (175), Expect = 1e-11, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 28/54 (51%) Query: 92 ALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSI 145 +LE RL V R+G T +ARQ ++H I +NGR + VS D + I Sbjct: 107 NILERRLQTQVLRLGLARTVVQARQFITHGHIAINGRKATVPGMLVSKEDEMHI 160 >UniRef50_D1Z0V6 30S ribosomal protein S4P n=1 Tax=Methanocella paludicola SANAE RepID=D1Z0V6_METPS Length = 208 Score = 71.0 bits (173), Expect = 2e-11, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 36/67 (53%) Query: 71 QFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVV 130 Q KE ++L+ + LLE +L +V+R G+ + +ARQ + H + +NGR + Sbjct: 85 QKLGVLKEDSKLEDILALKVEDLLERQLQTIVFRKGYANSMKQARQFIVHGHVSLNGRKI 144 Query: 131 NIASYQV 137 + SY V Sbjct: 145 TVPSYMV 151 >UniRef50_Q74NF7 30S ribosomal protein S4P n=4 Tax=Archaea RepID=RS4_NANEQ Length = 180 Score = 70.2 bits (171), Expect = 4e-11, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 27/46 (58%) Query: 93 LLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVS 138 +LE RL ++ R G T +ARQ + H IMVNG VV+ SY V Sbjct: 99 VLERRLQTMLVRKGLAKTMKQARQFIVHGHIMVNGEVVDAPSYLVK 144 >UniRef50_Q18G54 30S ribosomal protein S4P n=9 Tax=Halobacteriaceae RepID=RS4_HALWD Length = 175 Score = 69.5 bits (169), Expect = 8e-11, Method: Composition-based stats. Identities = 20/47 (42%), Positives = 26/47 (55%) Query: 93 LLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSP 139 +LE RL +VYR G +T +ARQ + H+ I VNG V S V Sbjct: 102 ILERRLQTIVYRQGLASTPKQARQFIVHEHITVNGARVTRPSKMVEE 148 >UniRef50_A0SNY6 Ribosomal protein S4 n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=A0SNY6_9EURY Length = 187 Score = 68.7 bits (167), Expect = 1e-10, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 5/78 (6%) Query: 65 YGVLERQFRNYYKEAARLKGNTGENLL-----ALLEGRLDNVVYRMGFGATRAEARQLVS 119 + ++ K G T E +L A LE RL VV++ G T +ARQL++ Sbjct: 65 HDTSDKIIARMVKFGILENGATLEKVLDITPNAFLERRLQTVVFKKGLARTIKQARQLIT 124 Query: 120 HKAIMVNGRVVNIASYQV 137 H I VN + V+I Y V Sbjct: 125 HGFIAVNMKRVSIPGYMV 142 >UniRef50_A8Q6S4 Putative uncharacterized protein n=1 Tax=Malassezia globosa CBS 7966 RepID=A8Q6S4_MALGO Length = 431 Score = 68.3 bits (166), Expect = 1e-10, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 57/160 (35%), Gaps = 34/160 (21%) Query: 44 RKPRLSDYGVQLREKQKVRRIYG--VLERQFRNYY------------------------- 76 K ++ Y + R K+ +R +G + ER+F+ ++ Sbjct: 42 TKTSMTMYQQRWRSKRMLRGYHGDWIPERRFKRWFLPTSLPSYAPSFLSTVKPLSDADES 101 Query: 77 -KEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASY 135 + +E R+D V+R F + AR LV H + +NG V Y Sbjct: 102 DHALDSPTPPVKSLFMRDVERRIDTAVFRCCFAHSVYYARSLVLHGKVSLNGNVHRDPGY 161 Query: 136 QVSPNDVVSIREKAKKQ------SRVKAALELAEQREKPT 169 + P D++S+ RV+A E ++ P Sbjct: 162 LLQPGDLLSVEPSCVPMLNGHVAKRVQADRERHAVKKSPP 201 >UniRef50_A8MDS5 30S ribosomal protein S4P n=6 Tax=Thermoprotei RepID=RS4_CALMQ Length = 181 Score = 68.3 bits (166), Expect = 2e-10, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 26/46 (56%) Query: 92 ALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQV 137 A+LE RL +VYR G + EARQL+ H I +NG V Y V Sbjct: 102 AVLERRLQTLVYRKGMARSIHEARQLIVHGHISINGVRVRSPGYLV 147 >UniRef50_Q12ZR5 30S ribosomal protein S4P n=2 Tax=Methanosarcinales RepID=RS4_METBU Length = 184 Score = 67.5 bits (164), Expect = 2e-10, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 31/55 (56%) Query: 92 ALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIR 146 A+LE RL V+R+G T +ARQ ++H I ++G+ V + V+ +++ Sbjct: 104 AILERRLQTQVHRLGLARTARQARQFITHGHIAIDGKRVTVPGMMVTREQEMNVE 158 >UniRef50_Q5KLM6 Nam9 protein, mitochondrial, putative n=2 Tax=Filobasidiella neoformans RepID=Q5KLM6_CRYNE Length = 317 Score = 67.2 bits (163), Expect = 3e-10, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 34/67 (50%) Query: 83 KGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDV 142 + G L A +E RLD +++R F EAR+ V + +NG+V+ + ++P DV Sbjct: 129 RAPVGTMLFADIERRLDVLIFRSCFAQNVWEARRYVVQGHVKLNGQVMRNPNIMLNPGDV 188 Query: 143 VSIREKA 149 ++ Sbjct: 189 FTVNPSQ 195 >UniRef50_A4WM27 30S ribosomal protein S4P n=5 Tax=Thermoproteaceae RepID=RS4_PYRAR Length = 159 Score = 66.4 bits (161), Expect = 6e-10, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 26/46 (56%) Query: 92 ALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQV 137 A+LE RL +VYRMG + ARQL+ H I + GR V + V Sbjct: 102 AILERRLQTIVYRMGLAKSIYHARQLIVHGHIAIEGRRVTSPGFLV 147 >UniRef50_Q4P4E5 Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4P4E5_USTMA Length = 464 Score = 65.2 bits (158), Expect = 1e-09, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 33/64 (51%) Query: 86 TGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSI 145 T + +E RLD VV+R F + E+R +V + +NG + + + P D++S+ Sbjct: 149 TASLFMRDVERRLDVVVFRSCFARSAYESRSMVVQGKVTLNGVKCSNPNQLLEPGDLISV 208 Query: 146 REKA 149 + A Sbjct: 209 QPSA 212 >UniRef50_B6YSQ1 30S ribosomal protein S4P n=12 Tax=Euryarchaeota RepID=RS4_THEON Length = 180 Score = 64.5 bits (156), Expect = 2e-09, Method: Composition-based stats. Identities = 17/45 (37%), Positives = 27/45 (60%) Query: 93 LLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQV 137 +L+ RL +V++ G T +ARQL+ H I VNG+++ Y V Sbjct: 100 VLDRRLQTIVFKKGLARTIRQARQLIVHGHIEVNGQIIRSPGYLV 144 >UniRef50_A4YIN4 30S ribosomal protein S4P n=3 Tax=Thermoprotei RepID=RS4_METS5 Length = 180 Score = 61.8 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 15/40 (37%), Positives = 20/40 (50%) Query: 99 DNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVS 138 +V+R G T +ARQL+ H I V GR + Y V Sbjct: 107 QTIVHRKGLARTIYQARQLIVHGHIAVGGRKITSPGYIVK 146 >UniRef50_D2EFK3 Ribosomal protein S4 n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EFK3_9EURY Length = 176 Score = 61.0 bits (147), Expect = 2e-08, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 2/63 (3%) Query: 89 NLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVS--PNDVVSIR 146 NL ++ RL V + G + E+RQ+++H+ I V+G++++ SY V D + Sbjct: 97 NLENFMDRRLQTFVLKKGMARSIRESRQVITHRHIAVDGKIIDSPSYMVKKEEEDKIDFA 156 Query: 147 EKA 149 E + Sbjct: 157 ETS 159 >UniRef50_Q4MYC2 Ribosomal protein S4, putative n=1 Tax=Theileria parva RepID=Q4MYC2_THEPA Length = 205 Score = 58.7 bits (141), Expect = 1e-07, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 63/146 (43%), Gaps = 14/146 (9%) Query: 4 YLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRR 63 Y KLK R+ + + + TK I +H ++ +L + ++ Sbjct: 3 YNIKKLKTLRKFNL-----TNIYELTTKTNIIFKKKKHIYKEYKLP------TNIKILKI 51 Query: 64 IYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAI 123 +Y V +++ + + + + L +L+ RLD V++ +T +++Q +SHK I Sbjct: 52 LYDVKDKKLKYSFNKFLFVNIY---KFLKILKSRLDFVLFNNNLFSTINQSKQNISHKHI 108 Query: 124 MVNGRVVNIASYQVSPNDVVSIREKA 149 +N + SY V D++ + + Sbjct: 109 FLNNTIARHPSYCVKNLDIIHLYNIS 134 >UniRef50_D1B2S0 Hemolysin A n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B2S0_SULD5 Length = 238 Score = 57.9 bits (139), Expect = 2e-07, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 35/59 (59%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSR 154 RLDN V+ GF +R +A +L+ ++ VNG V +S++V ND V + + ++ SR Sbjct: 1 MRLDNYVFEKGFAQSRNKASELIKEGSVWVNGNVERKSSFEVCENDKVDVEKISQYVSR 59 >UniRef50_B5SQ81 Putative ribosomal protein S4 (Fragment) n=1 Tax=Blastocystis sp. NandII RepID=B5SQ81_9STRA Length = 1017 Score = 56.4 bits (135), Expect = 5e-07, Method: Composition-based stats. Identities = 28/171 (16%), Positives = 52/171 (30%), Gaps = 16/171 (9%) Query: 17 TDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRI---YGVLERQFR 73 + + K + H + + Y + KQ +R+ Y E + Sbjct: 22 ISILNTKKKKWNGLKNNSKGKYIYHYKKLKIENLYNYKFINKQILRKYLAIYNDNEFKL- 80 Query: 74 NYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIA 133 R N E RLD +Y F + A+ ++ + VN + + Sbjct: 81 ----ILKRNYLNF--------EKRLDFNLYHANFVNSIYAAKFFITKGCVFVNKKKITSF 128 Query: 134 SYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFKR 184 +Y + ND+V I + ++ LE+D F Sbjct: 129 NYILKKNDIVEINSIFYNYIINNISFNDFNKKNYIRNLEIDYKTFSFIFLD 179 >UniRef50_A4RKE3 Putative uncharacterized protein n=1 Tax=Magnaporthe grisea RepID=A4RKE3_MAGGR Length = 445 Score = 56.4 bits (135), Expect = 6e-07, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 25/44 (56%) Query: 88 ENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVN 131 + A +E RLD ++R F ++ +ARQ H + VNG+ V+ Sbjct: 138 QMTYAPMERRLDIAIFRALFASSARQARQFCVHGFVKVNGQPVD 181 >UniRef50_A9A436 30S ribosomal protein S4P n=4 Tax=Thaumarchaeota RepID=RS4_NITMS Length = 201 Score = 56.4 bits (135), Expect = 6e-07, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%) Query: 93 LLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDV--VSIREKAK 150 LL RL +V + T +ARQ V H IM+ R V+I SY V+ + + ++K Sbjct: 100 LLSRRLQTIVTKKLGFKTPYQARQAVIHGHIMIGERKVDIPSYTVTVEEENSIHFAPESK 159 Query: 151 KQSRVKA 157 ++ Sbjct: 160 IPQVLEK 166 >UniRef50_Q2NFZ4 30S ribosomal protein S4P n=5 Tax=Methanobacteriaceae RepID=RS4_METST Length = 182 Score = 54.8 bits (131), Expect = 2e-06, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 26/49 (53%) Query: 93 LLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPND 141 +L RL ++V++ G T EAR V H I +NG+ +N + V D Sbjct: 100 ILRRRLQSLVFKRGLSHTAKEARLFVVHGHITLNGKKINAPGHLVEKAD 148 >UniRef50_B0BLG9 Ribosomal protein S4 n=1 Tax=Cycas taitungensis RepID=B0BLG9_CYCTA Length = 348 Score = 54.8 bits (131), Expect = 2e-06, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 54/151 (35%), Gaps = 16/151 (10%) Query: 10 KLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQ-------LREKQKVR 62 K R L + + + + R + + Y Q L+ +K+ Sbjct: 7 KTCR----PLSGNVRNKKLTRIQRRIPRRLRSKRRSIKKNIYPRQNLNSYIKLQTIRKLP 62 Query: 63 RIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKA 122 +G L K + + L E R D + R F T +ARQ +SH+ Sbjct: 63 LSHGNLP-----IIKMHGGTERTSYIPFLFNPETRSDVIPVRPHFRETIPQARQPISHRK 117 Query: 123 IMVNGRVVNIASYQVSPNDVVSIREKAKKQS 153 I N +VNI +VS D + I++ + Sbjct: 118 IRANNEMVNITRSKVSHGDPIPIKDNYVRTM 148 >UniRef50_Q6UVU2 Ribosomal protein S4 n=1 Tax=Pseudendoclonium akinetum RepID=Q6UVU2_PSEAK Length = 420 Score = 54.1 bits (129), Expect = 3e-06, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%) Query: 89 NLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIRE 147 ++ LLE RLD ++++ F + ARQ + ++VNG + S+Q P DV + + Sbjct: 363 KIVNLLESRLDVILWKNQFAGSIKSARQNLRQG-VLVNGGLQKKTSFQALPGDVFTFNK 420 >UniRef50_P52810 40S ribosomal protein S9 n=99 Tax=Eukaryota RepID=RS9_PODAN Length = 190 Score = 54.1 bits (129), Expect = 3e-06, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 26/46 (56%) Query: 93 LLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVS 138 LE RL +VY++G + AR L+ + I V ++VN+ S+ V Sbjct: 102 FLERRLQTLVYKLGLAKSIHHARVLIRQRHIRVGKQIVNVPSFVVR 147 >UniRef50_B5SQ56 Putative ribosomal protein S4 (Fragment) n=1 Tax=Blastocystis sp. DMP/02-328 RepID=B5SQ56_9STRA Length = 922 Score = 53.3 bits (127), Expect = 5e-06, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 47/127 (37%), Gaps = 6/127 (4%) Query: 63 RIYGVLERQF-RNYYKEAARLKGNTGENLLAL--LEGRLDNVVYRMGFGATRAEARQLVS 119 Y +QF + Y T L +E RLD +Y+ F + A ++ Sbjct: 66 YYYKFNNKQFLKKYLVNYKEYNFKTHIISLNFKTIERRLDYNLYKAKFVPSLFAAHFYIT 125 Query: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAK---KQSRVKAALELAEQREKPTWLEVDAG 176 + I VN + + ++ + ND V+I K KQ+ + L E LE+D Sbjct: 126 NGYIFVNQKCIKNCNFILQTNDRVTIHSKIYNICKQTLINTFLTKNETLNYIKNLEIDFT 185 Query: 177 KMEGTFK 183 F Sbjct: 186 TCSFIFL 192 >UniRef50_A7AXH2 Putative uncharacterized protein n=1 Tax=Babesia bovis RepID=A7AXH2_BABBO Length = 214 Score = 51.8 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 4/90 (4%) Query: 56 REKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEAR 115 + Q ++ IY + ++ NY + + L +L+ R+D ++ T R Sbjct: 43 KNIQILKTIYNLKNKRLNNYLE----YNIYKLIDFLKILKSRVDYILLESELFLTLNHIR 98 Query: 116 QLVSHKAIMVNGRVVNIASYQVSPNDVVSI 145 Q + H+ I++N + + SY +S ND++ + Sbjct: 99 QNIIHRHILLNNKTIINYSYIISTNDIIHL 128 >UniRef50_C8S933 RNA-binding S4 domain protein n=2 Tax=Archaeoglobaceae RepID=C8S933_FERPL Length = 208 Score = 51.8 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 35/61 (57%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRV 155 RLD + + G+ +R++A++ + + VNG+V+ S+QV ++ + + EK K + Sbjct: 1 MRLDEFLKKSGYFKSRSQAKEAIKRGFVKVNGKVITKPSFQVKGSEKIEVAEKGKPRGYY 60 Query: 156 K 156 K Sbjct: 61 K 61 >UniRef50_Q9TAI3 Ribosomal protein S4 n=1 Tax=Cafeteria roenbergensis RepID=Q9TAI3_CAFRO Length = 1641 Score = 51.4 bits (122), Expect = 2e-05, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 57/149 (38%), Gaps = 14/149 (9%) Query: 6 GPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRIY 65 G K + R G +R I + ++ ++ Y + K ++ R Sbjct: 45 GDKGRKVR--GIHSLKWYKMRYIFGLKFFNFSS----KKRRKVRFYLQKNLYKVELYRKK 98 Query: 66 GVL-------ERQFRNYYK-EAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQL 117 G L + + RN++K + + + N + E RLD + +RM T A Sbjct: 99 GFLSFYRKLDDSKIRNWFKHQYNKSRQFKIINFFKMFETRLDVISFRMKLTPTIFLANMF 158 Query: 118 VSHKAIMVNGRVVNIASYQVSPNDVVSIR 146 + + + +N + SY++ D++S Sbjct: 159 IKTRGLQINYGLKKEPSYRLQIGDLISFE 187 >UniRef50_O15612 40S ribosomal protein S9 n=4 Tax=Entamoeba RepID=RS9_ENTHI Length = 185 Score = 51.4 bits (122), Expect = 2e-05, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 27/48 (56%) Query: 92 ALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSP 139 LLE RL +VYR GF + AR L+ K I V +VV++ S+ V Sbjct: 103 NLLERRLQTLVYRKGFAKSIHHARVLIRGKMIKVGKQVVDVPSFLVRV 150 >UniRef50_P46781 40S ribosomal protein S9 n=236 Tax=Eukaryota RepID=RS9_HUMAN Length = 194 Score = 51.4 bits (122), Expect = 2e-05, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 25/46 (54%) Query: 93 LLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVS 138 LE RL V+++G + AR L+ + I V +VVNI S+ V Sbjct: 105 FLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVR 150 >UniRef50_Q8TYA5 Predicted RNA-binding protein containing the S4 domain n=1 Tax=Methanopyrus kandleri RepID=Q8TYA5_METKA Length = 79 Score = 50.6 bits (120), Expect = 3e-05, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 28/50 (56%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSI 145 RLD + +G +R EA++LV + VNG++V + VSP D + + Sbjct: 5 RRLDAFLRDVGLAESRREAKRLVESGRVRVNGKLVRKPWWLVSPGDEIEV 54 >UniRef50_B7GTM9 Hemolysin A n=18 Tax=Bifidobacteriaceae RepID=B7GTM9_BIFLI Length = 276 Score = 50.6 bits (120), Expect = 3e-05, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 23/44 (52%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPN 140 RLD ++ G +RA+A++L+ + V+G + S+ V Sbjct: 33 RLDMMLVASGLVESRAKAQRLIKAGHVRVDGETITKPSFMVKAG 76 >UniRef50_A8F528 Hemolysin A n=1 Tax=Thermotoga lettingae TMO RepID=A8F528_THELT Length = 265 Score = 50.2 bits (119), Expect = 4e-05, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 31/67 (46%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRV 155 RLD +V A+R++AR L+ ++VNG++ D + + E + SR Sbjct: 3 KRLDLIVTERKLAASRSQARDLIKLGRVVVNGKICRKPGTICFEEDEIKLCEPRQYVSRG 62 Query: 156 KAALELA 162 LE A Sbjct: 63 GEKLEKA 69 >UniRef50_Q2N6H3 S4 domain protein n=1 Tax=Erythrobacter litoralis HTCC2594 RepID=Q2N6H3_ERYLH Length = 103 Score = 49.8 bits (118), Expect = 6e-05, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 2/70 (2%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRV 155 R+D V+ R+ F TR+ AR L+ + NGR V S+ V+ D++++ K V Sbjct: 1 MRIDLVLCRLRFFKTRSAARNLIEAGHLRANGRRVVQVSHPVAEGDILTV--PLGKSVVV 58 Query: 156 KAALELAEQR 165 L L E+R Sbjct: 59 IEILHLPERR 68 >UniRef50_A3TX18 S4 domain protein n=4 Tax=Rhodobacteraceae RepID=A3TX18_9RHOB Length = 130 Score = 49.4 bits (117), Expect = 8e-05, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 29/56 (51%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQ 152 RLD +++ F +R+ A LV+ + VNG S+ V P DV++ + + + Sbjct: 9 RLDKWIWQARFVKSRSLAAGLVTGGHVRVNGMRAAKPSHGVQPGDVLTFPQGDRIR 64 >UniRef50_B3T3X2 Putative S4 domain protein n=2 Tax=prokaryotic environmental samples RepID=B3T3X2_9ZZZZ Length = 230 Score = 48.7 bits (115), Expect = 1e-04, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 54/150 (36%), Gaps = 27/150 (18%) Query: 15 EGTDLFLKSGVRAIDTKCKIEQAPGQHGARK----PRLSDYGVQLREKQKVRRI------ 64 G F + + K + +H ++ ++ REK +RR Sbjct: 1 MGHPKFARPKTQTPAHPWKAARIEEEHALKEQFGLKKVGGMREIWREKSALRRHRNQAMK 60 Query: 65 ----------YGVLERQ--FRNYYKEAARLKGNTGENLLA-----LLEGRLDNVVYRMGF 107 + E+Q ++ G++ +++L +L RL +VVY G Sbjct: 61 LIGRVDSSEGHFAREKQDLVEALHRRGLIAGGSSIDDVLQITVEHMLARRLQSVVYYRGL 120 Query: 108 GATRAEARQLVSHKAIMVNGRVVNIASYQV 137 + +R ++ H I + + + + Y++ Sbjct: 121 APSMRASRNMIVHGHISIGEQRMTVPGYKI 150 >UniRef50_A0B9H7 RNA-binding S4 domain protein n=1 Tax=Methanosaeta thermophila PT RepID=A0B9H7_METTP Length = 238 Score = 48.3 bits (114), Expect = 1e-04, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 2/59 (3%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSR 154 RLD + +R++A L+ +MVNG V SY+V P D V I E + SR Sbjct: 3 MRLDIYLVE--IAGSRSKAVHLIKSGKVMVNGAVCRKQSYRVKPGDRVEIVEGFRYVSR 59 >UniRef50_A5P9N3 S4 domain protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P9N3_9SPHN Length = 85 Score = 47.9 bits (113), Expect = 2e-04, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 2/73 (2%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRV 155 R+D ++ + F TR+ AR+LV I NG V S ++ DV+++ + ++ Sbjct: 1 MRIDRLLCTLRFVRTRSAARKLVDQGHIRRNGERVLRPSRDIAVGDVLTL--PVGRHVKL 58 Query: 156 KAALELAEQREKP 168 L+L E+R P Sbjct: 59 IEVLQLPERRGPP 71 >UniRef50_B2USJ4 Hemolysin n=12 Tax=Helicobacter pylori RepID=B2USJ4_HELPS Length = 235 Score = 47.9 bits (113), Expect = 2e-04, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 25/50 (50%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSI 145 RLD ++ +R +A+ LV ++VN VV+ S+ V D + + Sbjct: 1 MRLDYALFNQHLVNSREKAKALVLKNQVLVNKMVVSKPSFIVKEGDKIEL 50 >UniRef50_A5VJ39 RNA-binding S4 domain protein n=13 Tax=Lactobacillus RepID=A5VJ39_LACRD Length = 261 Score = 47.5 bits (112), Expect = 2e-04, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQ 152 RLD V+ GF +R A+QL+ H + +N ++ YQ+ +D++S+R + + Sbjct: 185 RLDVVI-AAGFNYSRNRAKQLIEHGQVRLNWEEIDRPDYQIVVHDLISVRHGGRLR 239 >UniRef50_Q3LWD1 Ribosomal protein S9 n=1 Tax=Bigelowiella natans RepID=Q3LWD1_BIGNA Length = 180 Score = 47.5 bits (112), Expect = 3e-04, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 27/49 (55%) Query: 90 LLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVS 138 L ++L RL VV ++ T EAR L+ HK I V ++VN S+ V Sbjct: 103 LRSILSRRLQTVVKQLKLSKTIHEARILIMHKHIQVKNQIVNKPSFLVR 151 >UniRef50_C7R3S3 Hemolysin A n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R3S3_JONDD Length = 310 Score = 47.1 bits (111), Expect = 3e-04, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 27/51 (52%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIR 146 RLD V G +R A +++S A+ VNGR + ++ V D ++++ Sbjct: 8 RRLDVTVVMRGLAPSRNRAARIISDGAVFVNGRSITKPAWPVHNADTITLK 58 >UniRef50_A3VSN6 Hemolysin HlyA n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VSN6_9PROT Length = 243 Score = 46.7 bits (110), Expect = 5e-04, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 25/53 (47%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREK 148 RLD+ + G +R A++++ + VNG V A + P D V R + Sbjct: 1 MRLDSYLVEAGHVRSRERAKKVIGDGYVWVNGVQVRKAGRSLQPTDRVEFRGE 53 >UniRef50_B1GZX8 Putative rRNA methylase n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GZX8_UNCTG Length = 250 Score = 46.4 bits (109), Expect = 7e-04, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 24/51 (47%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIRE 147 RLD +++ GF TR +A+ + I VN ++ V D + +R Sbjct: 9 RLDVLLFEKGFAETRTKAQAFIMSGNIFVNNQIQYRPGTLVGKEDSIEVRN 59 >UniRef50_C9M7F5 Hemolysin A n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M7F5_9BACT Length = 269 Score = 46.0 bits (108), Expect = 8e-04, Method: Composition-based stats. Identities = 18/43 (41%), Positives = 24/43 (55%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSP 139 RLD + R F +T EAR L+S ++V GR V+ QV P Sbjct: 9 RLDRRLVREHFASTDEEARLLISSGLVLVEGRAVDSPDCQVKP 51 >UniRef50_A8AW22 S4 domain n=3 Tax=Streptococcus RepID=A8AW22_STRGC Length = 275 Score = 46.0 bits (108), Expect = 9e-04, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 24/127 (18%) Query: 51 YGVQLREKQKVRRIYGVLERQFRNYY-----KEAA---RLKGNTGENLLALLE------- 95 +G L EK + + +++++F ++ K A +LK E LL + E Sbjct: 136 FGDILVEKDRAQV---LVDKRFTQFFIDHISKIAKTPVKLKEVGFERLLRVQEAQVSKEI 192 Query: 96 ----GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKK 151 RLD ++ F +R +A QL+ K + VN +++ SY V ND++S+R + + Sbjct: 193 LASSMRLDKLI-ASSFKLSRNDASQLIFGKHVKVNYSIIDNPSYLVELNDLISVR-RFGR 250 Query: 152 QSRVKAA 158 VK Sbjct: 251 FKIVKEN 257 >UniRef50_D0MJ49 Pseudouridine synthase n=2 Tax=Bacteria RepID=D0MJ49_RHOM4 Length = 355 Score = 45.6 bits (107), Expect = 0.001, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 29/51 (56%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIR 146 GRLD + R A+R + ++ + + VNG VV +Y V P DV+++R Sbjct: 20 GRLDAYLARFLAQASRTKIQRGIREGRVTVNGVVVQKPAYTVQPGDVITLR 70 >UniRef50_C7N702 Hemolysin A n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N702_SLAHD Length = 267 Score = 45.2 bits (106), Expect = 0.001, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 26/51 (50%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIR 146 RLD + G +RA+A+ ++ + VNGR V AS V D + ++ Sbjct: 1 MRLDVALVERGLEPSRAKAKASIAAGLVFVNGRNVTKASLGVDDGDAIEVQ 51 >UniRef50_A6UE60 RNA-binding S4 domain protein n=12 Tax=Rhizobiales RepID=A6UE60_SINMW Length = 137 Score = 44.8 bits (105), Expect = 0.002, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 28/58 (48%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSR 154 RLD ++ +R+ A++ + ++VNG+ +S Q+ D++ + + + Sbjct: 14 RLDKWLFFARLIKSRSLAQKAIEAGHVVVNGKRETQSSAQIKAGDMLEVSLERRDLVL 71 >UniRef50_B0XDY0 U3 small nucleolar ribonucleoprotein protein IMP3 n=8 Tax=Coelomata RepID=B0XDY0_CULQU Length = 181 Score = 44.8 bits (105), Expect = 0.002, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 6/62 (9%) Query: 76 YKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASY 135 + A++L +T RL V+ R ++A QL+ H + V VV ++ Sbjct: 94 LENASKLSAST------FCRRRLPVVLLRSKMAENISQATQLIEHGHVRVGAEVVKDPAF 147 Query: 136 QV 137 V Sbjct: 148 LV 149 >UniRef50_D2RHD3 RNA-binding S4 domain protein n=1 Tax=Archaeoglobus profundus DSM 5631 RepID=D2RHD3_ARCPR Length = 209 Score = 44.8 bits (105), Expect = 0.002, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 27/42 (64%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQV 137 RLD ++ G+ ++R +A++ + + ++VNG+VV SY V Sbjct: 1 MRLDRLLVIKGYFSSRQKAKEAIRRRFVIVNGKVVTKPSYDV 42 >UniRef50_Q2GC52 RNA-binding S4 n=3 Tax=Sphingomonadaceae RepID=Q2GC52_NOVAD Length = 96 Score = 44.4 bits (104), Expect = 0.002, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRV 155 R+D ++ F TR A+ V I +NGR + S V DV+ + + + V Sbjct: 1 MRIDKFLWFTRFAGTRNLAQGWVEDGHIRLNGRRIERCSADVRLGDVLVL--PMRSRVTV 58 Query: 156 KAALELAEQR 165 L L +R Sbjct: 59 IEVLALPARR 68 >UniRef50_Q11YT0 Pseudouridine synthase n=9 Tax=Bacteroidetes RepID=Q11YT0_CYTH3 Length = 562 Score = 44.4 bits (104), Expect = 0.002, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Query: 95 EGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREK 148 E RL+ + G +R EA QL+ + VNG VV Y+V P D V K Sbjct: 328 EIRLNKYISNSGIC-SRREADQLIIEGTVKVNGIVVTELGYKVKPGDSVKYNNK 380 >UniRef50_Q85X15 ORF76a n=1 Tax=Pinus koraiensis RepID=Q85X15_PINKO Length = 76 Score = 44.4 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 19/35 (54%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVV 130 RL+N+++R+G T ARQL I +N + Sbjct: 1 MRLNNILFRLGMAPTIPGARQLTRLFFIQLNNCNI 35 >UniRef50_C7GEB1 Putative S4 domain protein n=2 Tax=Roseburia RepID=C7GEB1_9FIRM Length = 250 Score = 44.1 bits (103), Expect = 0.003, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 33/53 (62%), Gaps = 7/53 (13%) Query: 97 RLDNV---VYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIR 146 RLD+V VYR+ +R+++ +L+ + VNG+ + +Y P+D++S+R Sbjct: 174 RLDSVIACVYRL----SRSQSLELIRADRVFVNGKNIQTPTYICKPDDIISVR 222 >UniRef50_Q7UUI8 Pseudouridine synthase n=1 Tax=Rhodopirellula baltica RepID=Q7UUI8_RHOBA Length = 321 Score = 44.1 bits (103), Expect = 0.003, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 95 EGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIR 146 EGR+D +V R +R++AR ++ H +M+NG V P D+V++R Sbjct: 15 EGRVDIIV-RELSETSRSQARGMIDHGCVMINGSPCKSVGTTVKPGDLVAVR 65 >UniRef50_UPI0001C41E03 rRNA methylase n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41E03 Length = 264 Score = 44.1 bits (103), Expect = 0.003, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 32/67 (47%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVK 156 RLD + A+R ++++++ K + VN +++ ASY V D V I + + Sbjct: 4 RLDKYLVNNNLIASRTKSKEMIKSKNVKVNDKIITKASYTVRDGDKVEIINDESLRYVSR 63 Query: 157 AALELAE 163 L+L Sbjct: 64 GGLKLEG 70 >UniRef50_A4XKR0 RNA-binding S4 domain protein n=2 Tax=Clostridia RepID=A4XKR0_CALS8 Length = 277 Score = 43.7 bits (102), Expect = 0.004, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 3/72 (4%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRV 155 R+D +V GFG +R +A LV + VN ++ SY+V D++S+R + +V Sbjct: 201 MRVDAIVSH-GFGISREDASDLVRQFKVAVNWVYIDKPSYEVKEGDLISVR--HHGRLKV 257 Query: 156 KAALELAEQREK 167 + L ++ Sbjct: 258 EKVLTTTKKGRI 269 >UniRef50_C5RAG0 Ribosomal protein S4e n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RAG0_WEIPA Length = 261 Score = 43.7 bits (102), Expect = 0.004, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIRE 147 RLD++V G+ +R A+Q++ H + VN +N Y ++ ND+VS+R+ Sbjct: 185 RLDSIVAN-GYNISRNHAKQMIEHDLVRVNWTDINKPDYVLAVNDLVSVRK 234 >UniRef50_D2QMI8 RNA-binding S4 domain protein n=16 Tax=Bacteroidetes RepID=D2QMI8_9SPHI Length = 638 Score = 43.7 bits (102), Expect = 0.004, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 50/144 (34%), Gaps = 9/144 (6%) Query: 13 RREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRIYGVLERQF 72 RR + + + E + G Q+R Q +R R Sbjct: 328 RRGNDRRSNRDEESGFTGRQRKESGDRRTGNFTKAPDYKLEQVRANQFAKRSRPDDRRGS 387 Query: 73 R-NYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVN 131 + N ++ R N G RL+ + G +R EA +L++H I VNG++V Sbjct: 388 QDNDSEKGKRTPANDGT-------TRLNRFIANSGVC-SRREADELIAHGDISVNGKIVT 439 Query: 132 IASYQVSPNDVVSIREKAKKQSRV 155 Y+V D V K R Sbjct: 440 EMGYKVKEGDTVKYGTKVLNPERF 463 >UniRef50_B9JSK8 Hemolysin A n=20 Tax=Alphaproteobacteria RepID=B9JSK8_AGRVS Length = 263 Score = 43.7 bits (102), Expect = 0.004, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 7/100 (7%) Query: 92 ALLE-GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVV----SIR 146 LE RLD ++ + A+R+ AR V + VNGR V S SP DV Sbjct: 8 QSLEPQRLDQLLVALNLFASRSRARDAVQRGGVKVNGRTVTKPSLTFSP-DVTIEIDDPA 66 Query: 147 EKAKKQSRVKAALELAEQREKPT-WLEVDAGKMEGTFKRK 185 + ++ +K L + P+ + +D G G F Sbjct: 67 QDYVSRAALKLVAGLDHFKLDPSGHICLDVGASTGGFTEV 106 >UniRef50_A5INM9 Pseudouridine synthase n=7 Tax=Thermotogaceae RepID=A5INM9_THEP1 Length = 304 Score = 43.7 bits (102), Expect = 0.004, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 2/71 (2%) Query: 116 QLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDA 175 +L+ + VNG+ V S+ + DVV R + E + P L+V Sbjct: 32 KLIRKGKVYVNGKRVKDPSFDLEEGDVVEFR--YVNLENLPKRSEKKDLTPVPMKLDVLY 89 Query: 176 GKMEGTFKRKP 186 KP Sbjct: 90 EGKHYLVLNKP 100 >UniRef50_Q6MUD3 Hemolysin A n=1 Tax=Mycoplasma mycoides subsp. mycoides SC RepID=Q6MUD3_MYCMS Length = 149 Score = 43.3 bits (101), Expect = 0.005, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 2/68 (2%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVK 156 RLD +Y+ +R +A++ + +K + VN + S+ V ND++ IR + K V Sbjct: 4 RLDEYIYKNNLTQSRNKAKEHILNKEVYVNNIAIMKPSFLVDSNDLIEIR--STKLEYVS 61 Query: 157 AALELAEQ 164 A E ++ Sbjct: 62 RAYEKLKK 69 >UniRef50_Q7M9Y6 PUTATIVE HEMOLYSIN n=1 Tax=Wolinella succinogenes RepID=Q7M9Y6_WOLSU Length = 236 Score = 42.9 bits (100), Expect = 0.006, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 2/81 (2%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRV 155 RLD + + +R +AR L+ I+V+G+ + S +V VSI + + Sbjct: 1 MRLDAYLAKESLVPSREKARALILEGQILVDGKAASKPSMEVMEG--VSIELLSPSRYVG 58 Query: 156 KAALELAEQREKPTWLEVDAG 176 +AAL+L E + + Sbjct: 59 RAALKLQGFLESHPEISLKGE 79 >UniRef50_Q8IKM0 Mitochondrial ribosomal protein S4/S9, putative n=1 Tax=Plasmodium falciparum 3D7 RepID=Q8IKM0_PLAF7 Length = 159 Score = 42.9 bits (100), Expect = 0.006, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 2/74 (2%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPN--DVVSIREKAKKQS 153 RL +++R+ F T A + H I + V+N S+ ++ N D + + +K Sbjct: 83 RRLAVLLFRLKFVQTIKLAITYIQHGNIRIGNNVINNPSFHINRNMEDHIKWADGSKILK 142 Query: 154 RVKAALELAEQREK 167 ++ E + E Sbjct: 143 HIQKHRESKDDYEL 156 >UniRef50_Q28M35 RNA-binding S4 n=1 Tax=Jannaschia sp. CCS1 RepID=Q28M35_JANSC Length = 108 Score = 42.9 bits (100), Expect = 0.007, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%) Query: 99 DNVVYRMGFGATR-AEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKA 157 D +++ F TR ARQ VS + VN + AS Q+SP DV++ + + Sbjct: 2 DKWLWQARFFKTRSLAARQ-VSAGHVRVNATKITKASTQISPGDVLTFPQGNTIRVVKID 60 Query: 158 AL 159 AL Sbjct: 61 AL 62 >UniRef50_C7MC95 Predicted rRNA methylase n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MC95_BRAFD Length = 281 Score = 42.9 bits (100), Expect = 0.007, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 20/44 (45%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPN 140 RLD + G +R+ AR+++ +GR V S + P Sbjct: 5 RLDVALLAAGLARSRSHARRIIEEGRARADGRAVTKPSTPIPPG 48 >UniRef50_Q1GPH7 RNA-binding S4 n=1 Tax=Sphingopyxis alaskensis RepID=Q1GPH7_SPHAL Length = 116 Score = 42.9 bits (100), Expect = 0.008, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 26/44 (59%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPN 140 RLD +++ + F +R+ A+ +V+ I ++GR V+ +S V Sbjct: 11 RLDKLLWFLRFARSRSIAQAMVAAGHIRLDGRRVSRSSCAVQAG 54 >UniRef50_B7CAM4 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAM4_9FIRM Length = 243 Score = 42.5 bits (99), Expect = 0.008, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 5/63 (7%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPND---VVSIREKAKKQS 153 RLD + + ++RA+A+ ++ I VNG+V+ ASY VS D V +++ + Sbjct: 5 RLDKALLKT--ISSRAKAQDMIKEGKISVNGKVITKASYLVSDEDDIVVTHTQDEFVSRG 62 Query: 154 RVK 156 K Sbjct: 63 AFK 65 >UniRef50_Q2ST62 Hemolysin A n=3 Tax=Mollicutes RepID=Q2ST62_MYCCT Length = 269 Score = 42.5 bits (99), Expect = 0.008, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 2/68 (2%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKA-IMVNGRVVNIASYQVSPNDVVSIRE-KAKKQSR 154 RLD +Y++ +R++A++ +++K + VN + S+ V NDV+ IR K K SR Sbjct: 4 RLDEYIYKINLTQSRSKAKEHITNKKDVYVNNINIIKPSFLVDNNDVIEIRSTKLKYVSR 63 Query: 155 VKAALELA 162 LE A Sbjct: 64 AYEKLEKA 71 >UniRef50_Q03W41 Cell division protein, S4-like domain n=3 Tax=Leuconostoc RepID=Q03W41_LEUMM Length = 265 Score = 42.5 bits (99), Expect = 0.008, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 1/77 (1%) Query: 88 ENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIRE 147 EN L L RLD V+ GF +R+ A++L+ + VN + +++ DV+S+R+ Sbjct: 180 ENFLLLSSLRLDTVI-SAGFDLSRSGAKKLIEENQVRVNWSEIAKPDVELAIGDVISVRK 238 Query: 148 KAKKQSRVKAALELAEQ 164 + Q ++ + + Sbjct: 239 HGRVQIKLLDGISKKGK 255 >UniRef50_Q466Z9 FtsJ-like methyltransferase n=6 Tax=Euryarchaeota RepID=Q466Z9_METBF Length = 236 Score = 42.5 bits (99), Expect = 0.009, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 28/52 (53%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIRE 147 RLD + MG +R A++ + + VNG V+ AS VS +D++ + E Sbjct: 1 MRLDAYIVDMGHFKSRGRAKKAILAGNVKVNGAVITKASRDVSTDDIIEVTE 52 >UniRef50_B6AQT2 Hemolysin A n=2 Tax=Leptospirillum sp. Group II RepID=B6AQT2_9BACT Length = 251 Score = 42.5 bits (99), Expect = 0.010, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 35/68 (51%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRV 155 RLD +V + G+ ++R +A +L+ + V G V S Q S +DV + ++ Sbjct: 2 KRLDQLVLQKGWASSREKASELIVSGRVQVKGIVRVKPSIQASYDDVTLLAPDSEIVYVS 61 Query: 156 KAALELAE 163 + A++L+ Sbjct: 62 RGAMKLSG 69 >UniRef50_UPI0001BC329C RNA-binding S4 domain-containing protein n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC329C Length = 250 Score = 42.1 bits (98), Expect = 0.010, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIR 146 RLD V+ +GF +R+ + + VNGR++ +Y + D++S+ Sbjct: 175 RLDAVI-ALGFNGSRSHITSYIIDGKVSVNGRIITSNAYNLKAGDIISVH 223 >UniRef50_B9KC52 Pseudouridine synthase n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9KC52_THENN Length = 240 Score = 42.1 bits (98), Expect = 0.010, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQS 153 RLD + G G TR E R L+ H + VN R V +Y++S DVV + K Sbjct: 1 MRLDRYLSNRGIG-TRKEVRALIKHGRVTVNDRTVLDPAYKLSDKDVVKVDGKVIDLP 57 >UniRef50_Q0AX41 Pseudouridine synthase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AX41_SYNWW Length = 239 Score = 42.1 bits (98), Expect = 0.011, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREK 148 RL + G ++R +A +L++ + VN + + ++ + P D V K Sbjct: 1 MRLAKYLAESGI-SSRRQAERLITQGKVKVNDKTITELAFTLKPGDRVEFAGK 52 >UniRef50_B8DBQ5 S4 domain protein n=14 Tax=Listeria RepID=B8DBQ5_LISMH Length = 259 Score = 42.1 bits (98), Expect = 0.011, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIR 146 RLD ++ +R +A+QLV+ + VN + V ++ DV+S R Sbjct: 183 MRLDVIISNAHH-ISRQKAKQLVTAGLVKVNWKTVENPDFECEEEDVLSAR 232 >UniRef50_B9K8Q2 Hemolysin A n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9K8Q2_THENN Length = 267 Score = 42.1 bits (98), Expect = 0.012, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 36/72 (50%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRV 155 RLD +V G +R +A+ L+ I+VNG V AS V + + + E+ + SR Sbjct: 5 KRLDLLVLERGLVESREKAKALILAGKILVNGEKVTKASKLVPVDSHLEVLEEPRYVSRG 64 Query: 156 KAALELAEQREK 167 LE A +R K Sbjct: 65 GYKLESAFERFK 76 >UniRef50_C6QEU6 RNA-binding S4 domain protein n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QEU6_9RHIZ Length = 134 Score = 41.7 bits (97), Expect = 0.014, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 25/49 (51%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSI 145 R+D ++ +R A+ L+S + +N ++ S V P DV+++ Sbjct: 11 RVDQWLWFARITKSRTLAQDLISRGKVRLNREKIDKPSTLVKPGDVITL 59 >UniRef50_Q06803 Hemolysin A n=3 Tax=Brachyspira RepID=HLYA_TREHY Length = 240 Score = 41.7 bits (97), Expect = 0.014, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 34/67 (50%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRV 155 RLD V+ G+ +R++A+ ++ + VNG V ++++ D + + + K SR Sbjct: 1 MRLDEYVHSEGYTESRSKAQDIILAGCVFVNGVKVTSKAHKIKDTDNIEVVQNIKYVSRA 60 Query: 156 KAALELA 162 LE A Sbjct: 61 GEKLEKA 67 >UniRef50_A9NGL0 rRNA pseudouridylate synthase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NGL0_ACHLI Length = 238 Score = 41.7 bits (97), Expect = 0.015, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 5/77 (6%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVK 156 RL V+ + G A+R +A L++ + VN V+N+ Y+VSP D++++ K VK Sbjct: 3 RLSKVIAQAG-CASRRKAENLITEGKVKVNDEVINVLGYKVSPKDIITVEGK----PLVK 57 Query: 157 AALELAEQREKPTWLEV 173 L + +L Sbjct: 58 EPLVYYLLNKPTGYLST 74 >UniRef50_Q8SRU8 U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN n=1 Tax=Encephalitozoon cuniculi RepID=Q8SRU8_ENCCU Length = 180 Score = 41.7 bits (97), Expect = 0.015, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 52/120 (43%), Gaps = 8/120 (6%) Query: 44 RKPRLSDYGVQLREKQKVRRIYGVLERQFRNYYK----EAARLKGNTGENLLALLEGRLD 99 + +L++ +L+E VR + ++ Y + +L T + + E RL Sbjct: 52 KVRKLAEALARLKESDPVRTT--ITKKLVGRLYSVGVIKNRKLVDCTKVTVSSFCERRLP 109 Query: 100 NVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPN--DVVSIREKAKKQSRVKA 157 V+ R+ + +A + V H + + +VV S +S D VS +K+K + ++ Sbjct: 110 MVMKRIRMVPSFKDATRFVEHGHVRLGSKVVYDPSTIISKAMEDFVSWVDKSKIKRKIDE 169 >UniRef50_B7XIT4 SSU ribosomal protein S4P n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XIT4_ENTBH Length = 185 Score = 41.4 bits (96), Expect = 0.018, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 26/61 (42%) Query: 78 EAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQV 137 + LK L L+ RL ++V + G AR L++ K I + G VVN V Sbjct: 95 ISKCLKDVLNLELSDYLDRRLQSLVCKSGLARNINHARSLITQKQITIKGNVVNKPGMMV 154 Query: 138 S 138 Sbjct: 155 R 155 >UniRef50_C6VXU0 Pseudouridine synthase n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VXU0_DYAFD Length = 555 Score = 41.4 bits (96), Expect = 0.018, Method: Composition-based stats. Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Query: 95 EGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKK 151 E RL+ + G +R EA L+S I VNG++V Y+V P DVV +KA Sbjct: 322 EIRLNRYIANAGIC-SRREADDLISSGQISVNGKIVTEMGYKVRPTDVVKYGKKALN 377 >UniRef50_Q0G1N8 RNA-binding S4 n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0G1N8_9RHIZ Length = 161 Score = 41.4 bits (96), Expect = 0.019, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 2/89 (2%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVK 156 R+D + TR+ A+QLV K + +N ++ + V DV++I + V Sbjct: 23 RIDKWLVFARVVKTRSIAQQLVEAKKVRLNKEKIDNPARNVRVGDVLTI--SYSSRVHVF 80 Query: 157 AALELAEQREKPTWLEVDAGKMEGTFKRK 185 L A +R P + + Sbjct: 81 QVLGFAGRRGSPGDAQALYEDLNAPVVEV 109 >UniRef50_Q5WFI1 Putative uncharacterized protein n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WFI1_BACSK Length = 253 Score = 41.4 bits (96), Expect = 0.019, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVK 156 RLD ++ +G +RA+A L+ + VN +VV S++V+ D +S+R + + + Sbjct: 178 RLDALL-SALYGLSRAKAADLIGKGLVKVNWKVVEHPSFRVAIGDDLSVRGAGRAKVLKQ 236 Query: 157 AALELAEQREK 167 + ++ Sbjct: 237 EGVTKKDKYRL 247 >UniRef50_C6WCR0 RNA-binding S4 domain protein n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WCR0_ACTMD Length = 91 Score = 41.4 bits (96), Expect = 0.020, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIR-EKAKKQSRV 155 RL + G A AR+LV + VNGR + Q+ DVV++ EKA+ +R Sbjct: 14 RLGQFLKLAGLAEHGAHARELVEEGEVTVNGRPESRRGAQLKNGDVVAVDGEKARLVARA 73 Query: 156 KAA 158 A Sbjct: 74 TEA 76 >UniRef50_D1CG17 Hemolysin A n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CG17_THET1 Length = 277 Score = 41.4 bits (96), Expect = 0.021, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 27/51 (52%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIRE 147 RLD ++ +G ++R +A+ L+S + VNG + +V V ++E Sbjct: 11 RLDKLMVELGLASSREKAQALISSGLVTVNGEKARSSDQRVRRGTKVIVKE 61 >UniRef50_Q8T866 Putative uncharacterized protein n=1 Tax=Dictyostelium discoideum RepID=Q8T866_DICDI Length = 401 Score = 41.4 bits (96), Expect = 0.022, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREK 148 R+ ++ R G +R +A +L+ + VNG+++ + V P+D++++ +K Sbjct: 139 RIQKILARAGIA-SRRKAEELIIDGRVKVNGKIIKMEEILVKPHDIITVDDK 189 >UniRef50_UPI0001BC42EF hemolysin A n=2 Tax=Fusobacterium RepID=UPI0001BC42EF Length = 267 Score = 41.0 bits (95), Expect = 0.022, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 35/59 (59%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRV 155 RLD ++++ G+ + +A++L+ +++VN + ++ A ++ ++IR K ++ V Sbjct: 4 RLDQILWKYGYVDSIEKAKRLIMLGSVIVNEQRIDKAGTLFKYSEEMNIRVKGQENPYV 62 >UniRef50_B1CBW0 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CBW0_9FIRM Length = 247 Score = 41.0 bits (95), Expect = 0.023, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAK 150 RLD V+ + F +R EA V + +N V+ + V D++S+R K + Sbjct: 171 MRLDAVIGNI-FKLSRNEANMFVKGGKVKINHNQVSKPAMTVKVGDMISVRTKGR 224 >UniRef50_A0LDZ0 RNA-binding S4 domain protein n=2 Tax=Proteobacteria RepID=A0LDZ0_MAGSM Length = 130 Score = 41.0 bits (95), Expect = 0.024, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVK 156 R+D ++ F TRA A V+ + +NG+ + AS+QV D + I + + + V Sbjct: 10 RIDKWLWAARFFKTRALATDAVNGGHVHLNGQRI-KASHQVKVGDRLEITKGPVQFALVI 68 Query: 157 AAL 159 L Sbjct: 69 EGL 71 >UniRef50_B0MQ24 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MQ24_9FIRM Length = 241 Score = 41.0 bits (95), Expect = 0.025, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 27/52 (51%) Query: 94 LEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSI 145 ++ RLD + +R+ A L+ ++ VNGR+ AS+ V ND + I Sbjct: 1 MQKRLDVYLSENNTVKSRSLAASLIKQGSVEVNGRICTKASFAVDENDNIRI 52 >UniRef50_B1I3J7 Hemolysin A n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I3J7_DESAP Length = 274 Score = 41.0 bits (95), Expect = 0.025, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 25/50 (50%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIR 146 RLD +++ G +R AR + + VNG V+ ++ P+ + +R Sbjct: 6 RLDILLHSRGCFPSRERARSAIMAGVVFVNGVRVDKPGTKLDPHADIEVR 55 >UniRef50_C3XLQ2 Hemolysin A n=1 Tax=Helicobacter winghamensis ATCC BAA-430 RepID=C3XLQ2_9HELI Length = 247 Score = 41.0 bits (95), Expect = 0.026, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 23/48 (47%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVS 144 RLD ++ ++R +A L+ + VNG ++Y + D ++ Sbjct: 10 RLDVACVKLRIASSRNQAHALIKKGKVCVNGIPCAKSAYVLGLKDKIT 57 >UniRef50_B4U7M2 Hemolysin A n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U7M2_HYDS0 Length = 246 Score = 41.0 bits (95), Expect = 0.028, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 31/67 (46%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRV 155 RLD ++ G ++R +A+ + + VNG+ V A V D + + + K SR Sbjct: 3 KRLDLLLVEKGLVSSREKAQAFIMEGRVFVNGKAVLKAGTLVQEEDGIELLGEEKFVSRA 62 Query: 156 KAALELA 162 LE A Sbjct: 63 GYKLENA 69 >UniRef50_A7GRM2 RNA-binding S4 domain protein n=4 Tax=Bacillales RepID=A7GRM2_BACCN Length = 257 Score = 40.6 bits (94), Expect = 0.030, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 9/60 (15%) Query: 97 RLDNVVYRMGFGATRAEARQ----LVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQ 152 RLD V+ +RQ L+ + + VN +VV+ SY+ P D++S+R + + Sbjct: 182 RLDVVL-----AEILHLSRQKVQPLIKNGLVKVNWKVVDQTSYECLPGDILSVRGHGRSK 236 >UniRef50_D1ANU4 Pseudouridine synthase n=14 Tax=Fusobacteriaceae RepID=D1ANU4_SEBTE Length = 305 Score = 40.6 bits (94), Expect = 0.032, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 5/68 (7%) Query: 96 GRLDNVVY-RMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVS-IREKAKKQS 153 RLD + R TR + QL+ I VN + + SY+V ND + I K+ Sbjct: 13 KRLDLYIAERTELTRTRIQ--QLIKDGNINVNNKK-SKPSYKVEKNDFIEMIIPDEKEID 69 Query: 154 RVKAALEL 161 V + + Sbjct: 70 LVPENINI 77 >UniRef50_Q25804 Rps4 protein n=2 Tax=Plasmodium RepID=Q25804_PLAF7 Length = 208 Score = 40.6 bits (94), Expect = 0.034, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 1/103 (0%) Query: 49 SDYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGE-NLLALLEGRLDNVVYRMGF 107 S + ++L+ + + Y + +++ Y + N LL +LE RLD + +GF Sbjct: 40 SYFDLKLKFIRYICYNYCITYKKYLYYLNKIDNKNINILYFKLLKILELRLDIFLVNIGF 99 Query: 108 GATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAK 150 T ++R + +K I +N + + + ND++ K K Sbjct: 100 FKTILQSRYYIKYKNIYINNIINKYYNINLKNNDILFFNNKIK 142 >UniRef50_A6TRY3 RNA-binding S4 domain protein n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TRY3_ALKMQ Length = 262 Score = 40.6 bits (94), Expect = 0.034, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 4/73 (5%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVK 156 RLD +V GF +R+EA L+ + VN V++ S +VS D++SIR K + + Sbjct: 187 RLDAIV-SAGFKLSRSEAHVLIQKQRCSVNWEVIDKPSNEVSCGDLISIRGKGR---MIV 242 Query: 157 AALELAEQREKPT 169 +E + + + Sbjct: 243 ENIEGTTRSGRTS 255 >UniRef50_C9L5V3 RNA-binding S4 n=8 Tax=Clostridiales RepID=C9L5V3_RUMHA Length = 250 Score = 40.6 bits (94), Expect = 0.034, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 1/71 (1%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVK 156 RLD+V+ + F +R+ + + +NG+ V Y + D+VS+R K K Q Sbjct: 175 RLDSVI-GLAFRTSRSSMISYIESGKVFINGKSVVSNGYVLKEGDIVSVRGKGKFQFHSV 233 Query: 157 AALELAEQREK 167 + + Sbjct: 234 TSKTKKNRSHV 244 >UniRef50_D0LUB8 Hemolysin A n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LUB8_HALO1 Length = 282 Score = 40.6 bits (94), Expect = 0.036, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 3/72 (4%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRV- 155 RLD ++ R G A+R AR L+ + V G +V+ A +V + I ++K V Sbjct: 5 RLDTMLVRRGLVASRERARALILAGEVEVGGIIVSKAGTRV--AEEAEIALRSKDHPYVS 62 Query: 156 KAALELAEQREK 167 + AL+L E + Sbjct: 63 RGALKLVEGLDT 74 >UniRef50_A5G345 RNA-binding S4 domain protein n=2 Tax=Acetobacteraceae RepID=A5G345_ACICJ Length = 98 Score = 40.6 bits (94), Expect = 0.037, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 26/49 (53%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSI 145 RLD ++ F TR A +LV+ + +N ++ ++ P DV+++ Sbjct: 16 RLDKFLFHARFVKTRGVAARLVAAGGVRINRQITEKPHARLRPGDVLTL 64 >UniRef50_A3WG15 Putative heat shock protein 15 (HSP15) n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WG15_9SPHN Length = 92 Score = 40.6 bits (94), Expect = 0.037, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 36/74 (48%), Gaps = 2/74 (2%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRV 155 RLD ++ + F TR+ A+ ++ + +N + S +V DV+++ + + V Sbjct: 11 MRLDRLLVFLRFARTRSIAKAMILSGRMRLNSTRITKISCEVGVGDVLTLA--YRGEICV 68 Query: 156 KAALELAEQREKPT 169 +L ++R P+ Sbjct: 69 ARIEKLPDRRLSPS 82 >UniRef50_O67638 Uncharacterized RNA pseudouridine synthase aq_1758 n=3 Tax=Aquificaceae RepID=Y1758_AQUAE Length = 316 Score = 40.2 bits (93), Expect = 0.040, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 24/52 (46%) Query: 95 EGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIR 146 E RLD + R +R+ ++LV + VNG V S ++ + V + Sbjct: 15 EERLDKFLARAYPDFSRSYIKKLVKEGLVYVNGEEVRKPSRKLREGERVILH 66 >UniRef50_A7HKW0 Hemolysin A n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HKW0_FERNB Length = 263 Score = 40.2 bits (93), Expect = 0.040, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 25/41 (60%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQV 137 RLD ++ GF +R +A+Q++ + ++++G+V S + Sbjct: 7 RLDQLLILKGFVESRTKAQQMIENGLVLLDGKVCTKPSKKC 47 >UniRef50_UPI0001C37137 ribosomal large subunit pseudouridine synthase D n=1 Tax=Chlamydia muridarum Nigg RepID=UPI0001C37137 Length = 338 Score = 40.2 bits (93), Expect = 0.045, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 26/51 (50%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIR 146 GRLD + +RA +Q + + VNGRV ASY +S D+V + Sbjct: 25 GRLDKGLVLHNNAYSRAFYQQQIDLGRVRVNGRVQTRASYLLSQGDLVDLE 75 >UniRef50_B0S9J1 rRNA methylase/Hemolysin-tylA n=3 Tax=Leptospira biflexa serovar Patoc RepID=B0S9J1_LEPBA Length = 257 Score = 40.2 bits (93), Expect = 0.046, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 28/54 (51%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAK 150 RLD+ + R G+ A+ L+ +++VN +V+ +S D V +EK K Sbjct: 7 RLDDYLVREGYAKDLKLAQSLILSGSVLVNDTIVSKVGTLISNKDKVRTKEKIK 60 >UniRef50_C5CGS7 Hemolysin A n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CGS7_KOSOT Length = 268 Score = 40.2 bits (93), Expect = 0.047, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 24/44 (54%) Query: 94 LEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQV 137 L+ RLD ++ F ++R+ A ++ + +NG++V +V Sbjct: 3 LKLRLDELLVARNFFSSRSRASDIIKQGKVSINGKIVKKPGKKV 46 >UniRef50_P71020 Putative RNA-binding protein ylmH n=3 Tax=Bacillus RepID=YLMH_BACSU Length = 257 Score = 40.2 bits (93), Expect = 0.048, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 9/54 (16%) Query: 97 RLDNVVYRMGFGATRAEARQ----LVSHKAIMVNGRVVNIASYQVSPNDVVSIR 146 RLD V + ++RQ LV + + VN +VV SY V+ D++SIR Sbjct: 182 RLDAVC-----ASMSRQSRQKSQTLVKNGLVKVNWKVVEDPSYIVAEGDMLSIR 230 >UniRef50_B2IVN0 RNA-binding S4 domain protein n=11 Tax=cellular organisms RepID=B2IVN0_NOSP7 Length = 259 Score = 40.2 bits (93), Expect = 0.049, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 6/75 (8%) Query: 76 YKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASY 135 +E + + T E L RLD + GFG +R++ + + VN + V AS Sbjct: 169 VREPKKKELTTVEASL-----RLDAIA-SAGFGMSRSKMVDFIDAGDVRVNWKEVTQASS 222 Query: 136 QVSPNDVVSIREKAK 150 QV D+++IR K + Sbjct: 223 QVKSGDLIAIRSKGR 237 >UniRef50_Q9MUH2 Truncated ribosomal protein small subunit 4 (Fragment) n=5 Tax=Pteridium aquilinum RepID=Q9MUH2_PTEAQ Length = 67 Score = 40.2 bits (93), Expect = 0.049, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 3/60 (5%) Query: 11 LSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRIYGVLER 70 L RR L + + + ++S + V+L KQ++R YG+ ER Sbjct: 11 LIRRLKNLPGLAGRGKTSNLGEIRVATDQ---STSRKISQFCVRLEAKQRLRFNYGLTER 67 >UniRef50_UPI000196BAD7 hypothetical protein CATMIT_00510 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196BAD7 Length = 247 Score = 39.8 bits (92), Expect = 0.051, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Query: 94 LEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQ 152 +E RL V+ + G+ +R +A +L+ + VNG VV + +V+ D + + K + Sbjct: 1 MEERLQKVIAQSGY-TSRRKAEELIQQGKVTVNGEVVTVLGTKVTKKDTICVNGKLINK 58 >UniRef50_Q03QI1 Cell division protein, S4-like domain n=1 Tax=Lactobacillus brevis ATCC 367 RepID=Q03QI1_LACBA Length = 259 Score = 39.8 bits (92), Expect = 0.051, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIR 146 RLDN+V GF +R A++L+ + +N Y++ D+VS+R Sbjct: 183 RLDNIV-GTGFHLSRHRAKELIEAGHVRLNWAETQKPDYELDVADIVSVR 231 >UniRef50_B5ZBT3 Ribosomal RNA large subunit methyltransferase J n=15 Tax=Ureaplasma RepID=B5ZBT3_UREU1 Length = 247 Score = 39.8 bits (92), Expect = 0.052, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 24/55 (43%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKK 151 RLD+ + TR++A L+ + VN + S+ V ND V I+ Sbjct: 4 RLDHYLKNTNQCETRSKAIDLIKRGFVFVNNLQILKPSFLVQENDFVDIKNNENN 58 >UniRef50_B9LA28 Hemolysin A n=7 Tax=Epsilonproteobacteria RepID=B9LA28_NAUPA Length = 236 Score = 39.8 bits (92), Expect = 0.054, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 32/65 (49%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRV 155 RLD + + +R +A++++ + VN +++ S++++ D V + + SR Sbjct: 1 MRLDQYLVTNEYTFSRNKAQEIIKSGYVKVNDKIIKKPSFKIAETDSVEVLQNDGYVSRA 60 Query: 156 KAALE 160 L+ Sbjct: 61 AYKLK 65 >UniRef50_Q3SVL4 RNA-binding S4 n=16 Tax=Rhizobiales RepID=Q3SVL4_NITWN Length = 97 Score = 39.8 bits (92), Expect = 0.054, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Query: 91 LALLEG-RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIR 146 + +LE RLD ++ R +A LV + VNG + + DV++IR Sbjct: 1 MDVLERQRLDKWLWHARVVRARTQAASLVEAGRVRVNGLRQTSPGHPLRIADVLTIR 57 >UniRef50_A4WST9 RNA-binding S4 domain protein n=5 Tax=Alphaproteobacteria RepID=A4WST9_RHOS5 Length = 100 Score = 39.8 bits (92), Expect = 0.055, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSR 154 RLD + + F TRA A LV + +NG+ V + V D+++ + + + Sbjct: 10 RLDKWLVQARFFKTRALASALVEAGRVRLNGQHVAKPAQPVGEGDMLTFPQGGRIRLI 67 >UniRef50_A5Z689 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z689_9FIRM Length = 251 Score = 39.8 bits (92), Expect = 0.055, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAK 150 RLD+++ FG +R+ + + VNG++V +Q P+D++S+R K + Sbjct: 176 RLDSLIATA-FGTSRSSIISFIESGKVFVNGKMVTSNGHQPKPDDIISVRGKGR 228 >UniRef50_A6WWC5 Hemolysin A n=9 Tax=Bacteria RepID=A6WWC5_OCHA4 Length = 253 Score = 39.8 bits (92), Expect = 0.059, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 21/41 (51%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQV 137 RLD ++ +G ATR+ AR + + V+G+ V V Sbjct: 11 RLDQLLVELGLFATRSRARDAIQRGTVKVDGKPVTKPGQTV 51 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q3M534 30S ribosomal protein S4 n=946 Tax=cellular orga... 246 3e-64 UniRef50_B9L6T8 30S ribosomal protein S4 n=447 Tax=cellular orga... 243 2e-63 UniRef50_B5EFS6 30S ribosomal protein S4 n=51 Tax=Bacteria RepID... 243 3e-63 UniRef50_B1X067 30S ribosomal protein S4 n=18 Tax=cellular organ... 242 6e-63 UniRef50_B0VI05 30S ribosomal subunit protein S4 n=6 Tax=Bacteri... 240 3e-62 UniRef50_Q3APJ9 30S ribosomal protein S4 n=12 Tax=Bacteroidetes/... 238 1e-61 UniRef50_A0PXX4 30S ribosomal protein S4 A n=36 Tax=Bacteria Rep... 237 1e-61 UniRef50_B8HXV1 30S ribosomal protein S4 n=431 Tax=cellular orga... 236 3e-61 UniRef50_A5GRL5 30S ribosomal protein S4 n=52 Tax=cellular organ... 233 2e-60 UniRef50_A0M574 30S ribosomal protein S4 n=23 Tax=Bacteria RepID... 232 4e-60 UniRef50_A9B436 30S ribosomal protein S4 n=3 Tax=Bacteria RepID=... 232 5e-60 UniRef50_B9KZW1 30S ribosomal protein S4 n=56 Tax=Bacteria RepID... 231 1e-59 UniRef50_Q2JUD6 30S ribosomal protein S4 n=92 Tax=cellular organ... 230 2e-59 UniRef50_Q4FUD2 30S ribosomal protein S4 n=313 Tax=cellular orga... 229 6e-59 UniRef50_B5Y961 Ribosomal protein S4 n=1 Tax=Coprothermobacter p... 228 8e-59 UniRef50_P56799 30S ribosomal protein S4, chloroplastic n=803 Ta... 227 2e-58 UniRef50_Q1WT66 30S ribosomal protein S4 n=12 Tax=Bacteria RepID... 226 3e-58 UniRef50_Q0ZJ18 30S ribosomal protein S4, chloroplastic n=973 Ta... 224 1e-57 UniRef50_A4WUP0 30S ribosomal protein S4 n=66 Tax=Bacteria RepID... 223 3e-57 UniRef50_Q01WB9 30S ribosomal protein S4 n=301 Tax=Bacteria RepI... 223 3e-57 UniRef50_C9M7W9 Ribosomal protein S4 n=2 Tax=Synergistaceae RepI... 223 4e-57 UniRef50_Q1CXF1 30S ribosomal protein S4 B n=2 Tax=Cystobacterin... 222 7e-57 UniRef50_C6PD21 RNA-binding S4 domain protein n=1 Tax=Thermoanae... 222 8e-57 UniRef50_C9KPD3 Ribosomal protein S4 n=1 Tax=Mitsuokella multaci... 221 1e-56 UniRef50_Q2JFE9 30S ribosomal protein S4 n=124 Tax=Bacteria RepI... 220 2e-56 UniRef50_Q1H2K1 30S ribosomal protein S4 n=6 Tax=Proteobacteria ... 219 5e-56 UniRef50_A9MAK7 30S ribosomal protein S4 n=56 Tax=Alphaproteobac... 219 6e-56 UniRef50_D1C704 Ribosomal protein S4 n=2 Tax=Bacteria RepID=D1C7... 218 8e-56 UniRef50_Q1ACM7 30S ribosomal protein S4, chloroplastic n=1359 T... 216 4e-55 UniRef50_A9BFZ1 30S ribosomal protein S4 n=32 Tax=Bacteria RepID... 216 4e-55 UniRef50_C1ABG6 30S ribosomal protein S4 n=1 Tax=Gemmatimonas au... 214 1e-54 UniRef50_D0JAU4 30S ribosomal protein S4 n=1 Tax=Blattabacterium... 211 1e-53 UniRef50_A0T0H2 30S ribosomal protein S4, chloroplastic n=4 Tax=... 211 1e-53 UniRef50_C3PN57 30S ribosomal protein S4 n=41 Tax=cellular organ... 211 1e-53 UniRef50_D2BEX9 30S ribosomal protein S4 n=1 Tax=Streptosporangi... 208 6e-53 UniRef50_Q47R66 30S ribosomal protein S4 n=2 Tax=Nocardiopsaceae... 207 2e-52 UniRef50_C9RJV5 Ribosomal protein S4 n=1 Tax=Fibrobacter succino... 207 3e-52 UniRef50_C1TPK7 SSU ribosomal protein S4P n=1 Tax=Dethiosulfovib... 206 4e-52 UniRef50_B7T1T6 Ribosomal protein S4 n=1 Tax=Vaucheria litorea R... 206 5e-52 UniRef50_Q2SSN9 30S ribosomal protein S4 n=25 Tax=Mycoplasmatace... 204 1e-51 UniRef50_Q3KL69 30S ribosomal protein S4 n=17 Tax=Chlamydiales R... 204 2e-51 UniRef50_B7J2H5 30S ribosomal protein S4 n=21 Tax=Borrelia RepID... 203 2e-51 UniRef50_Q7UXM6 30S ribosomal protein S4 n=6 Tax=Planctomycetace... 203 4e-51 UniRef50_D1J7L7 30S ribosomal protein S4 n=2 Tax=Mycoplasma RepI... 202 5e-51 UniRef50_UPI00016B2693 ribosomal protein S4 n=1 Tax=candidate di... 201 1e-50 UniRef50_A9KJG7 30S ribosomal protein S4 n=79 Tax=Bacteria RepID... 199 4e-50 UniRef50_D1R5K6 Putative uncharacterized protein n=1 Tax=Parachl... 199 6e-50 UniRef50_A6TSI5 30S ribosomal protein S4 B n=42 Tax=Clostridiale... 198 8e-50 UniRef50_A5KQD5 Putative uncharacterized protein n=3 Tax=Ruminoc... 197 2e-49 UniRef50_O22020 30S ribosomal protein S4, chloroplastic n=1 Tax=... 195 6e-49 UniRef50_A5CCV1 30S ribosomal protein S4 n=58 Tax=Bacteria RepID... 195 8e-49 UniRef50_C6UNA0 30S ribosomal subunit protein S4 n=1 Tax=Candida... 194 2e-48 UniRef50_D1N636 Ribosomal protein S4 n=1 Tax=Victivallis vadensi... 193 3e-48 UniRef50_B2S2Q4 30S ribosomal protein S4 n=4 Tax=Treponema RepID... 192 8e-48 UniRef50_A5CRZ7 30S ribosomal protein S4 n=75 Tax=Actinobacteria... 191 1e-47 UniRef50_C7LKJ2 30S ribosomal subunit protein S4 n=1 Tax=Candida... 183 3e-45 UniRef50_Q2GDI3 30S ribosomal protein S4 n=3 Tax=Anaplasmataceae... 180 4e-44 UniRef50_Q06J34 30S ribosomal protein S4, chloroplastic n=1 Tax=... 180 4e-44 UniRef50_UPI00016C3E34 30S ribosomal protein S4 n=1 Tax=Gemmata ... 180 4e-44 UniRef50_Q6MIP0 30S ribosomal protein S4 B n=1 Tax=Bdellovibrio ... 178 1e-43 UniRef50_Q8WL66 Ribosomal protein small subunit 4 (Fragment) n=1... 175 9e-43 UniRef50_P58134 Plastid 30S ribosomal protein S4 n=1 Tax=Euglena... 174 2e-42 UniRef50_B2X261 Ribosomal protein S4 (Fragment) n=1 Tax=Floydiel... 166 3e-40 UniRef50_Q06SJ3 30S ribosomal protein S4, chloroplastic n=2 Tax=... 166 4e-40 UniRef50_C6B8C6 RNA-binding S4 domain protein n=1 Tax=Rhizobium ... 163 3e-39 UniRef50_Q85XL2 Small ribosomal protein 4 (Fragment) n=2 Tax=Emb... 163 3e-39 UniRef50_P48270 30S ribosomal protein S4, chloroplastic n=6 Tax=... 161 1e-38 UniRef50_Q5C773 SJCHGC09636 protein (Fragment) n=1 Tax=Schistoso... 161 2e-38 UniRef50_O21263 Ribosomal protein S4, mitochondrial n=1 Tax=Recl... 158 1e-37 UniRef50_B2X1Z7 Ribosomal protein S4 n=1 Tax=Oedogonium cardiacu... 156 3e-37 UniRef50_Q00NZ9 Rps4 (Fragment) n=5 Tax=Embryophyta RepID=Q00NZ9... 151 9e-36 UniRef50_C1IXJ0 Ribosomal protein S4 n=1 Tax=Picea sitchensis Re... 151 2e-35 UniRef50_D0PPV5 Small ribosomal protein 4 (Fragment) n=1 Tax=Aus... 147 2e-34 UniRef50_Q2WGC2 Ribosomal protein S4 (Fragment) n=2 Tax=Selagine... 143 2e-33 UniRef50_Q0P3J0 Mitochondrion, complete genome n=1 Tax=Ostreococ... 139 5e-32 UniRef50_P26866 Ribosomal protein S4, mitochondrial n=4 Tax=Stre... 139 7e-32 UniRef50_Q2EEX1 Plastid 30S ribosomal protein S4 n=1 Tax=Helicos... 138 1e-31 UniRef50_Q6VQL8 Rps4 n=1 Tax=Psammisia dolichopoda RepID=Q6VQL8_... 136 6e-31 UniRef50_Q05FK4 30S ribosomal protein S4 n=1 Tax=Candidatus Cars... 132 8e-30 UniRef50_C1KRH3 Ribosomal protein S4 n=1 Tax=Micromonas sp. RCC2... 131 1e-29 UniRef50_Q9G884 Ribosomal protein S4 n=1 Tax=Malawimonas jakobif... 126 4e-28 UniRef50_Q9TCC4 Ribosomal protein S4 n=1 Tax=Nephroselmis olivac... 120 3e-26 UniRef50_C6FG20 Ribosomal protein S4 n=2 Tax=Isoetes engelmannii... 117 3e-25 UniRef50_B2MWU8 Ribosomal protein S4 n=1 Tax=Hemiselmis andersen... 113 3e-24 UniRef50_A6YEB5 Ribosomal protein S4 n=1 Tax=Chlorokybus atmophy... 112 1e-23 UniRef50_Q8M1G7 Ribosomal protein S4 n=1 Tax=Chaetosphaeridium g... 111 1e-23 UniRef50_Q9G8X0 Ribosomal protein S4 n=1 Tax=Rhodomonas salina R... 111 1e-23 UniRef50_C1KRA9 Ribosomal protein S4 n=1 Tax=Micromonas pusilla ... 110 3e-23 UniRef50_Q7YN81 Apicoplast 30S ribosomal protein S4 n=1 Tax=Eime... 109 8e-23 UniRef50_C5JVX1 30S ribosomal subunit S4 n=4 Tax=Onygenales RepI... 107 3e-22 UniRef50_UPI000196B648 hypothetical protein CATMIT_01694 n=1 Tax... 106 4e-22 UniRef50_A6QVF5 Putative uncharacterized protein n=2 Tax=Onygena... 106 5e-22 UniRef50_C0NY83 NAM9+ protein n=3 Tax=Onygenales RepID=C0NY83_AJECG 106 5e-22 UniRef50_P27929 37S ribosomal protein NAM9, mitochondrial n=13 T... 106 6e-22 UniRef50_Q9XQQ7 Apicoplast 30S ribosomal protein S4 n=1 Tax=Toxo... 103 5e-21 UniRef50_Q6E781 Ribosomal protein S4 n=1 Tax=Saprolegnia ferax R... 101 1e-20 UniRef50_C5DZN7 ZYRO0G05918p n=1 Tax=Zygosaccharomyces rouxii Re... 101 2e-20 UniRef50_Q9F8G5 Ribosomal protein S4 (Fragment) n=1 Tax=Carboxyd... 100 3e-20 UniRef50_C4R204 Mitochondrial ribosomal component of the small s... 100 3e-20 UniRef50_Q0YR48 30S ribosomal protein S4 n=1 Tax=Chlorobium ferr... 99 4e-20 UniRef50_B2XXA8 Ribosomal protein S4 n=1 Tax=Dictyostelium fasci... 99 1e-19 UniRef50_B9WLL6 Mitochondrial ribosome protein, small subunit n=... 98 2e-19 UniRef50_P46743 Ribosomal protein S4, mitochondrial n=1 Tax=Prot... 97 3e-19 UniRef50_D2JP76 Ribosomal protein S4 n=1 Tax=Synedra acus RepID=... 95 2e-18 UniRef50_B6HQM4 Pc22g11690 protein n=15 Tax=Eurotiomycetidae Rep... 94 3e-18 UniRef50_Q31708 Ribosomal protein S4, mitochondrial n=44 Tax=Mag... 93 7e-18 UniRef50_B2W5M8 Putative uncharacterized protein n=2 Tax=Pleospo... 93 7e-18 UniRef50_Q2TUD0 Ribosomal protein S4 n=1 Tax=Dictyota dichotoma ... 92 1e-17 UniRef50_A8Q6S4 Putative uncharacterized protein n=1 Tax=Malasse... 92 1e-17 UniRef50_Q3S297 Ribosomal protein S4 n=1 Tax=Thalassiosira pseud... 92 1e-17 UniRef50_O60063 Putative 40S ribosomal protein S4-like n=2 Tax=S... 90 4e-17 UniRef50_UPI000169316E RpsD n=1 Tax=Paenibacillus larvae subsp. ... 90 7e-17 UniRef50_P0C5Y3 Ribosomal protein S4, mitochondrial n=3 Tax=Dict... 89 7e-17 UniRef50_Q2H0I0 Putative uncharacterized protein n=1 Tax=Chaetom... 89 9e-17 UniRef50_Q9T225 Ribosomal protein S4 n=3 Tax=Phytophthora RepID=... 88 2e-16 UniRef50_Q2TUL0 Ribosomal protein S4 n=11 Tax=Phaeophyceae RepID... 88 2e-16 UniRef50_Q8W9R0 Ribosomal protein S4 n=1 Tax=Mesostigma viride R... 87 3e-16 UniRef50_Q6CF39 YALI0B10494p n=1 Tax=Yarrowia lipolytica RepID=Q... 87 3e-16 UniRef50_B2B283 Predicted CDS Pa_6_5850 n=1 Tax=Podospora anseri... 87 4e-16 UniRef50_B8PNL6 Predicted protein n=2 Tax=Agaricomycetes RepID=B... 86 7e-16 UniRef50_A7F6V8 Putative uncharacterized protein n=2 Tax=Sclerot... 85 1e-15 UniRef50_C7ZPJ0 Putative uncharacterized protein n=2 Tax=Nectria... 85 2e-15 UniRef50_P46755 Ribosomal protein S4, mitochondrial n=1 Tax=Acan... 83 4e-15 UniRef50_B2XX60 Ribosomal protein S4 n=2 Tax=Polysphondylium pal... 82 1e-14 UniRef50_Q09MH6 Ribosomal protein S4 n=10 Tax=Citrus RepID=Q09MH... 79 1e-13 UniRef50_B0BLG9 Ribosomal protein S4 n=1 Tax=Cycas taitungensis ... 78 1e-13 UniRef50_Q5KLM6 Nam9 protein, mitochondrial, putative n=2 Tax=Fi... 78 2e-13 UniRef50_Q0YR49 Ribosomal protein S4 n=1 Tax=Chlorobium ferrooxi... 78 2e-13 UniRef50_A0SNY6 Ribosomal protein S4 n=1 Tax=Candidatus Micrarch... 77 4e-13 UniRef50_B5SQ81 Putative ribosomal protein S4 (Fragment) n=1 Tax... 77 4e-13 UniRef50_Q7SA90 Predicted protein n=3 Tax=Fungi/Metazoa group Re... 76 6e-13 UniRef50_Q4MYC2 Ribosomal protein S4, putative n=1 Tax=Theileria... 76 8e-13 UniRef50_Q0W1V5 30S ribosomal protein S4P n=1 Tax=uncultured met... 76 9e-13 UniRef50_B1L795 30S ribosomal protein S4P n=1 Tax=Candidatus Kor... 75 1e-12 UniRef50_Q74NF7 30S ribosomal protein S4P n=4 Tax=Archaea RepID=... 75 2e-12 UniRef50_C3N052 30S ribosomal protein S4P n=29 Tax=Archaea RepID... 74 2e-12 UniRef50_Q46GC8 30S ribosomal protein S4P n=3 Tax=Methanosarcina... 74 3e-12 UniRef50_Q4P4E5 Putative uncharacterized protein n=1 Tax=Ustilag... 73 5e-12 UniRef50_Q9TAI3 Ribosomal protein S4 n=1 Tax=Cafeteria roenberge... 73 8e-12 UniRef50_D1Z0V6 30S ribosomal protein S4P n=1 Tax=Methanocella p... 72 1e-11 UniRef50_A7IAH7 30S ribosomal protein S4P n=5 Tax=Methanomicrobi... 72 1e-11 UniRef50_B5SQ56 Putative ribosomal protein S4 (Fragment) n=1 Tax... 71 2e-11 UniRef50_B3T3X2 Putative S4 domain protein n=2 Tax=prokaryotic e... 71 2e-11 UniRef50_A8MDS5 30S ribosomal protein S4P n=6 Tax=Thermoprotei R... 71 2e-11 UniRef50_Q18G54 30S ribosomal protein S4P n=9 Tax=Halobacteriace... 71 3e-11 UniRef50_Q12ZR5 30S ribosomal protein S4P n=2 Tax=Methanosarcina... 70 4e-11 UniRef50_A4WM27 30S ribosomal protein S4P n=5 Tax=Thermoproteace... 68 3e-10 UniRef50_UPI0001699071 30S ribosomal protein S4 n=1 Tax=Endorift... 68 3e-10 UniRef50_B6YSQ1 30S ribosomal protein S4P n=12 Tax=Euryarchaeota... 67 4e-10 UniRef50_A4YIN4 30S ribosomal protein S4P n=3 Tax=Thermoprotei R... 63 4e-09 UniRef50_D2EFK3 Ribosomal protein S4 n=1 Tax=Candidatus Parvarch... 63 8e-09 UniRef50_A7AXH2 Putative uncharacterized protein n=1 Tax=Babesia... 62 1e-08 UniRef50_Q2N6H3 S4 domain protein n=1 Tax=Erythrobacter litorali... 62 1e-08 UniRef50_A3TX18 S4 domain protein n=4 Tax=Rhodobacteraceae RepID... 61 2e-08 UniRef50_A8F528 Hemolysin A n=1 Tax=Thermotoga lettingae TMO Rep... 61 3e-08 UniRef50_Q8TYA5 Predicted RNA-binding protein containing the S4 ... 61 3e-08 UniRef50_A5P9N3 S4 domain protein n=1 Tax=Erythrobacter sp. SD-2... 61 3e-08 UniRef50_A9A436 30S ribosomal protein S4P n=4 Tax=Thaumarchaeota... 60 4e-08 UniRef50_P52810 40S ribosomal protein S9 n=99 Tax=Eukaryota RepI... 60 5e-08 UniRef50_A4RKE3 Putative uncharacterized protein n=1 Tax=Magnapo... 59 7e-08 UniRef50_D1B2S0 Hemolysin A n=1 Tax=Sulfurospirillum deleyianum ... 59 9e-08 UniRef50_Q6UVU2 Ribosomal protein S4 n=1 Tax=Pseudendoclonium ak... 59 1e-07 UniRef50_B7GTM9 Hemolysin A n=18 Tax=Bifidobacteriaceae RepID=B7... 59 1e-07 UniRef50_P46781 40S ribosomal protein S9 n=236 Tax=Eukaryota Rep... 58 1e-07 UniRef50_A5VJ39 RNA-binding S4 domain protein n=13 Tax=Lactobaci... 58 2e-07 UniRef50_Q2NFZ4 30S ribosomal protein S4P n=5 Tax=Methanobacteri... 58 2e-07 UniRef50_C7R3S3 Hemolysin A n=1 Tax=Jonesia denitrificans DSM 20... 58 2e-07 UniRef50_O15612 40S ribosomal protein S9 n=4 Tax=Entamoeba RepID... 57 4e-07 UniRef50_A0B9H7 RNA-binding S4 domain protein n=1 Tax=Methanosae... 57 4e-07 UniRef50_C8S933 RNA-binding S4 domain protein n=2 Tax=Archaeoglo... 57 5e-07 UniRef50_B2USJ4 Hemolysin n=12 Tax=Helicobacter pylori RepID=B2U... 57 5e-07 UniRef50_A8AW22 S4 domain n=3 Tax=Streptococcus RepID=A8AW22_STRGC 56 6e-07 UniRef50_B1GZX8 Putative rRNA methylase n=1 Tax=uncultured Termi... 55 1e-06 UniRef50_A3VSN6 Hemolysin HlyA n=1 Tax=Parvularcula bermudensis ... 55 2e-06 UniRef50_C7N702 Hemolysin A n=1 Tax=Slackia heliotrinireducens D... 55 2e-06 UniRef50_A6UE60 RNA-binding S4 domain protein n=12 Tax=Rhizobial... 53 5e-06 UniRef50_D0MJ49 Pseudouridine synthase n=2 Tax=Bacteria RepID=D0... 53 5e-06 UniRef50_C9M7F5 Hemolysin A n=1 Tax=Jonquetella anthropi E3_33 E... 53 8e-06 UniRef50_Q3LWD1 Ribosomal protein S9 n=1 Tax=Bigelowiella natans... 52 2e-05 UniRef50_B0XDY0 U3 small nucleolar ribonucleoprotein protein IMP... 51 2e-05 UniRef50_D2RHD3 RNA-binding S4 domain protein n=1 Tax=Archaeoglo... 49 9e-05 Sequences not found previously or not previously below threshold: UniRef50_Q2GC52 RNA-binding S4 n=3 Tax=Sphingomonadaceae RepID=Q... 55 2e-06 UniRef50_Q28M35 RNA-binding S4 n=1 Tax=Jannaschia sp. CCS1 RepID... 52 1e-05 UniRef50_A4WST9 RNA-binding S4 domain protein n=5 Tax=Alphaprote... 52 1e-05 UniRef50_D2LJI2 RNA-binding S4 domain protein n=1 Tax=Rhodomicro... 51 3e-05 UniRef50_B4U7M2 Hemolysin A n=1 Tax=Hydrogenobaculum sp. Y04AAS1... 51 3e-05 UniRef50_C5RAG0 Ribosomal protein S4e n=1 Tax=Weissella paramese... 51 3e-05 UniRef50_C6QEU6 RNA-binding S4 domain protein n=1 Tax=Hyphomicro... 51 3e-05 UniRef50_A0LDZ0 RNA-binding S4 domain protein n=2 Tax=Proteobact... 51 4e-05 UniRef50_Q466Z9 FtsJ-like methyltransferase n=6 Tax=Euryarchaeot... 50 4e-05 UniRef50_Q06803 Hemolysin A n=3 Tax=Brachyspira RepID=HLYA_TREHY 50 4e-05 UniRef50_C7MC95 Predicted rRNA methylase n=1 Tax=Brachybacterium... 50 5e-05 UniRef50_Q0G1N8 RNA-binding S4 n=1 Tax=Fulvimarina pelagi HTCC25... 50 5e-05 UniRef50_Q1GPH7 RNA-binding S4 n=1 Tax=Sphingopyxis alaskensis R... 49 6e-05 UniRef50_B8ERF0 RNA-binding S4 domain protein n=9 Tax=Rhizobiale... 49 6e-05 UniRef50_Q3SVL4 RNA-binding S4 n=16 Tax=Rhizobiales RepID=Q3SVL4... 49 7e-05 UniRef50_B1LWX7 RNA-binding S4 domain protein n=2 Tax=Alphaprote... 49 8e-05 UniRef50_B1I3J7 Hemolysin A n=1 Tax=Candidatus Desulforudis auda... 49 1e-04 UniRef50_B6IUH9 Heat shock protein, putative n=1 Tax=Rhodospiril... 49 1e-04 UniRef50_B0MQ24 Putative uncharacterized protein n=1 Tax=Eubacte... 49 1e-04 UniRef50_Q7M9Y6 PUTATIVE HEMOLYSIN n=1 Tax=Wolinella succinogene... 49 1e-04 UniRef50_Q03W41 Cell division protein, S4-like domain n=3 Tax=Le... 48 1e-04 UniRef50_B8DBQ5 S4 domain protein n=14 Tax=Listeria RepID=B8DBQ5... 48 2e-04 UniRef50_C9KK38 Hemolysin A n=2 Tax=Clostridiales RepID=C9KK38_9... 48 2e-04 UniRef50_B9K8Q2 Hemolysin A n=1 Tax=Thermotoga neapolitana DSM 4... 48 2e-04 UniRef50_B9JSK8 Hemolysin A n=20 Tax=Alphaproteobacteria RepID=B... 48 2e-04 UniRef50_D0LUB8 Hemolysin A n=1 Tax=Haliangium ochraceum DSM 143... 48 2e-04 UniRef50_A3WG15 Putative heat shock protein 15 (HSP15) n=1 Tax=E... 48 2e-04 UniRef50_UPI0001C41E03 rRNA methylase n=1 Tax=Methanobrevibacter... 48 2e-04 UniRef50_D0LZ35 RNA-binding S4 domain protein n=1 Tax=Haliangium... 48 2e-04 UniRef50_C7NHB2 Predicted rRNA methylase n=1 Tax=Kytococcus sede... 48 2e-04 UniRef50_Q7UUI8 Pseudouridine synthase n=1 Tax=Rhodopirellula ba... 48 3e-04 UniRef50_A5G345 RNA-binding S4 domain protein n=2 Tax=Acetobacte... 48 3e-04 UniRef50_Q03QI1 Cell division protein, S4-like domain n=1 Tax=La... 48 3e-04 UniRef50_Q5WFI1 Putative uncharacterized protein n=1 Tax=Bacillu... 47 3e-04 UniRef50_Q6MUD3 Hemolysin A n=1 Tax=Mycoplasma mycoides subsp. m... 47 3e-04 UniRef50_B7XIT4 SSU ribosomal protein S4P n=1 Tax=Enterocytozoon... 47 3e-04 UniRef50_B7CAM4 Putative uncharacterized protein n=1 Tax=Eubacte... 47 4e-04 UniRef50_C0VZ81 Hemolysin A n=1 Tax=Actinomyces coleocanis DSM 1... 47 4e-04 UniRef50_D1CG17 Hemolysin A n=1 Tax=Thermobaculum terrenum ATCC ... 47 4e-04 UniRef50_B1CBW0 Putative uncharacterized protein n=1 Tax=Anaerof... 47 5e-04 UniRef50_C5CGS7 Hemolysin A n=1 Tax=Kosmotoga olearia TBF 19.5.1... 47 5e-04 UniRef50_C0QTE7 Hemolysin A n=4 Tax=Hydrogenothermaceae RepID=C0... 46 6e-04 UniRef50_B5YE07 Hemolysin A n=2 Tax=Dictyoglomus RepID=B5YE07_DICT6 46 6e-04 UniRef50_B9LA28 Hemolysin A n=7 Tax=Epsilonproteobacteria RepID=... 46 6e-04 UniRef50_A4XKR0 RNA-binding S4 domain protein n=2 Tax=Clostridia... 46 6e-04 UniRef50_D0L0H9 RNA-binding S4 domain protein n=1 Tax=Halothioba... 46 7e-04 UniRef50_B1XPC6 Hemolysin A n=50 Tax=cellular organisms RepID=B1... 46 7e-04 UniRef50_C3XLQ2 Hemolysin A n=1 Tax=Helicobacter winghamensis AT... 46 7e-04 UniRef50_UPI0001BC329C RNA-binding S4 domain-containing protein ... 46 7e-04 UniRef50_B2KAR0 Hemolysin A n=1 Tax=Elusimicrobium minutum Pei19... 46 7e-04 UniRef50_Q2JUA0 Hemolysin A n=8 Tax=Cyanobacteria RepID=Q2JUA0_S... 46 7e-04 UniRef50_A1B330 RNA-binding S4 domain protein n=2 Tax=Alphaprote... 46 8e-04 UniRef50_Q8SRW6 40S ribosomal protein S9 n=2 Tax=Apansporoblasti... 46 8e-04 UniRef50_A0QXX1 Heat shock protein 15 n=18 Tax=Actinomycetales R... 46 8e-04 UniRef50_D1BIF7 Hemolysin A n=1 Tax=Sanguibacter keddieii DSM 10... 46 8e-04 UniRef50_B2IVN0 RNA-binding S4 domain protein n=11 Tax=cellular ... 46 8e-04 UniRef50_C1C8Q1 YlmH protein n=28 Tax=Streptococcus RepID=C1C8Q1... 46 9e-04 UniRef50_A6LLJ5 Hemolysin A n=3 Tax=Bacteria RepID=A6LLJ5_THEM4 46 0.001 UniRef50_B4RLH8 Ribosome-associated heat shock protein Hsp15 n=2... 46 0.001 UniRef50_Q2ST62 Hemolysin A n=3 Tax=Mollicutes RepID=Q2ST62_MYCCT 46 0.001 UniRef50_B5JS43 RNA-binding S4 domain protein n=1 Tax=gamma prot... 46 0.001 UniRef50_A5IKF7 Pseudouridine synthase n=5 Tax=Thermotogaceae Re... 46 0.001 UniRef50_UPI00016B2072 Hemolysin A n=3 Tax=candidate division TM... 46 0.001 UniRef50_A4SAS0 Predicted protein n=11 Tax=Viridiplantae RepID=A... 45 0.001 UniRef50_Q0AX41 Pseudouridine synthase n=1 Tax=Syntrophomonas wo... 45 0.001 UniRef50_Q1D5Q2 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q1... 45 0.001 UniRef50_D1AKQ2 Hemolysin A n=1 Tax=Sebaldella termitidis ATCC 3... 45 0.001 UniRef50_A9UVZ1 Predicted protein n=3 Tax=Eukaryota RepID=A9UVZ1... 45 0.001 UniRef50_UPI0001BC42EF hemolysin A n=2 Tax=Fusobacterium RepID=U... 45 0.001 >UniRef50_Q3M534 30S ribosomal protein S4 n=946 Tax=cellular organisms RepID=RS4_ANAVT Length = 202 Score = 246 bits (628), Expect = 3e-64, Method: Composition-based stats. Identities = 85/206 (41%), Positives = 121/206 (58%), Gaps = 6/206 (2%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 M+RY GP+L++ RR G L + PGQHG + + S+Y ++L EKQK Sbjct: 1 MSRYRGPRLRIVRRLGDLPGLTRKS------ARRAYPPGQHGQNRKKRSEYAIRLEEKQK 54 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 +R YG+ E+Q Y + A R+ G+TG+ LL LLE RLDN V+R+G T ARQLV+H Sbjct: 55 LRLNYGLTEKQLLRYVRRARRVTGSTGQVLLQLLEMRLDNTVFRLGMAPTIPAARQLVNH 114 Query: 121 KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEG 180 + VNGRVVNIASYQ P + +++R+KA + V+ L+ P+ LE D K+ G Sbjct: 115 GHVTVNGRVVNIASYQCRPGEEIAVRDKAPSRKLVENNLQYPGLANLPSHLEFDKNKLVG 174 Query: 181 TFKRKPERSDLSADINEHLIVELYSK 206 ER ++ +NE L+VE YS+ Sbjct: 175 KVNGVIEREWVALQVNELLVVEYYSR 200 >UniRef50_B9L6T8 30S ribosomal protein S4 n=447 Tax=cellular organisms RepID=RS4_NAUPA Length = 208 Score = 243 bits (621), Expect = 2e-63, Method: Composition-based stats. Identities = 111/208 (53%), Positives = 145/208 (69%), Gaps = 2/208 (0%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVR--AIDTKCKIEQAPGQHGARKPRLSDYGVQLREK 58 MARY GP K+ RR G L LK R K APGQHG R+ ++S+YG+QLREK Sbjct: 1 MARYTGPVEKIERRLGVSLELKGERRLAGKSALDKRPYAPGQHGQRRTKISEYGLQLREK 60 Query: 59 QKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 QK++ YGVLE+QFR +++EA R +GNTGENL+ LLE RLDNVVYRMGF +TR ARQLV Sbjct: 61 QKIKFYYGVLEKQFRKFFREANRQEGNTGENLIKLLERRLDNVVYRMGFASTRRFARQLV 120 Query: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 +H I+VNG+ VNI SY V D + IREK+K +++ ALEL++Q W++VD K+ Sbjct: 121 THGHILVNGKKVNIPSYLVKEGDRIEIREKSKNNVQIQRALELSQQTGIAPWVDVDKEKL 180 Query: 179 EGTFKRKPERSDLSADINEHLIVELYSK 206 G F+R PER +++ + E L+VELYSK Sbjct: 181 VGVFQRVPEREEVNIPVEERLVVELYSK 208 >UniRef50_B5EFS6 30S ribosomal protein S4 n=51 Tax=Bacteria RepID=RS4_GEOBB Length = 208 Score = 243 bits (621), Expect = 3e-63, Method: Composition-based stats. Identities = 111/208 (53%), Positives = 140/208 (67%), Gaps = 2/208 (0%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDT--KCKIEQAPGQHGARKPRLSDYGVQLREK 58 MARY GP +L RREG++LFLK D + PGQHG + ++SDYGVQLREK Sbjct: 1 MARYTGPSCRLCRREGSELFLKGERCYTDKCAIKRRSYPPGQHGQGRIKVSDYGVQLREK 60 Query: 59 QKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 QKVRRIYG+LE QFR Y++ A R+KG TGENLL +LE RLDNV YR+GF +R EARQLV Sbjct: 61 QKVRRIYGILENQFRGYFETADRMKGVTGENLLFILERRLDNVAYRLGFATSRDEARQLV 120 Query: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 H +NG+ VNI S QV DV+ +REK++K + + +LE +R P WLE++ Sbjct: 121 RHGHFTLNGKKVNIPSLQVKAGDVLQLREKSRKVAAISESLEGVVRRGIPQWLELEKDAF 180 Query: 179 EGTFKRKPERSDLSADINEHLIVELYSK 206 +GT K P R D++ I E LIVELYSK Sbjct: 181 KGTVKAMPVREDITMPIQEQLIVELYSK 208 >UniRef50_B1X067 30S ribosomal protein S4 n=18 Tax=cellular organisms RepID=RS4_CYAA5 Length = 202 Score = 242 bits (618), Expect = 6e-63, Method: Composition-based stats. Identities = 85/206 (41%), Positives = 117/206 (56%), Gaps = 6/206 (2%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 M+RY GP+L++ RR G L + PGQHG + + S+Y ++L EKQK Sbjct: 1 MSRYRGPRLRVVRRLGELPGLSRKTP------RRAYPPGQHGQGRRKRSEYAIRLEEKQK 54 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 + YGV E+Q Y K+A R +TG+ LL LLE RLDN V+R+G T ARQLV+H Sbjct: 55 LLYNYGVTEKQLVRYMKKARRSTDSTGQKLLELLEMRLDNTVFRLGMAGTIPGARQLVNH 114 Query: 121 KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEG 180 ++VNGRVVNIASYQ P DV+S+R K + V+ ++ P LE D + G Sbjct: 115 GHVIVNGRVVNIASYQCRPGDVISVRNKDNSRRMVETNMQYPGLANLPDHLEFDKNTLTG 174 Query: 181 TFKRKPERSDLSADINEHLIVELYSK 206 +R ++ INE L+VE YS+ Sbjct: 175 KVNDVIKREWVALQINELLVVEYYSR 200 >UniRef50_B0VI05 30S ribosomal subunit protein S4 n=6 Tax=Bacteria RepID=B0VI05_9BACT Length = 205 Score = 240 bits (612), Expect = 3e-62, Method: Composition-based stats. Identities = 90/207 (43%), Positives = 127/207 (61%), Gaps = 3/207 (1%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR-KPRLSDYGVQLREKQ 59 MA+Y GPK K+ R+ G +++ + I K + GQHG + +LSDYG+ L+EKQ Sbjct: 1 MAKYTGPKAKICRKFGENIYGNAKYDKI--LSKRKYPAGQHGRNLRRKLSDYGLHLKEKQ 58 Query: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119 K+R Y ++E+QF NY+K+AA+ G TG+NLL LLE RLDNVVYRMGF TR +ARQ ++ Sbjct: 59 KMRHTYCLMEKQFSNYFKKAAKAPGVTGDNLLQLLERRLDNVVYRMGFAVTRMQARQFIN 118 Query: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179 H +VNGR V+I SY V D++ +R K+K + A++ E +W+ VD Sbjct: 119 HGHFLVNGRKVDIPSYLVKAGDIIEVRPKSKGMKPLLEAMDKTEVTSPYSWMSVDKENFR 178 Query: 180 GTFKRKPERSDLSADINEHLIVELYSK 206 G F P S++ + LIVE YSK Sbjct: 179 GQFNSIPAVSEIPVTCDLRLIVEFYSK 205 >UniRef50_Q3APJ9 30S ribosomal protein S4 n=12 Tax=Bacteroidetes/Chlorobi group RepID=RS4_CHLCH Length = 203 Score = 238 bits (607), Expect = 1e-61, Method: Composition-based stats. Identities = 100/207 (48%), Positives = 135/207 (65%), Gaps = 5/207 (2%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGA-RKPRLSDYGVQLREKQ 59 MAR+ G K+SRR G L K+ + PGQHG RK ++S+Y +QLREKQ Sbjct: 1 MARFRGSITKVSRRLGIALAPKAEKY----LERRPFPPGQHGQGRKGKISEYALQLREKQ 56 Query: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119 K++ +YG+LE+QFRNYYK+A +G TG+NL+ LLE RLDN+V+R GF +RA ARQLVS Sbjct: 57 KMKYLYGILEKQFRNYYKKAVAQRGVTGDNLVKLLERRLDNIVFRAGFSPSRAGARQLVS 116 Query: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179 H + VNG+ V+I SY VSP DV+ R+K+K S V +L + P W++VD + Sbjct: 117 HGHVTVNGKKVDIPSYLVSPADVMEFRQKSKNMSAVTDSLNKTPESRIPAWIQVDKAHQK 176 Query: 180 GTFKRKPERSDLSADINEHLIVELYSK 206 F PER+D+ + NE L+VELYSK Sbjct: 177 AVFLSVPERADIQEEFNEQLVVELYSK 203 >UniRef50_A0PXX4 30S ribosomal protein S4 A n=36 Tax=Bacteria RepID=RS4A_CLONN Length = 206 Score = 237 bits (606), Expect = 1e-61, Method: Composition-based stats. Identities = 112/208 (53%), Positives = 142/208 (68%), Gaps = 4/208 (1%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDT--KCKIEQAPGQHGARKPRLSDYGVQLREK 58 MARY+G +L RREG LFLK D + APGQHG + +LS+YGVQLREK Sbjct: 1 MARYIGATCRLCRREGMKLFLKGDRCYTDKCAFARRSYAPGQHGQGRKKLSNYGVQLREK 60 Query: 59 QKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 QK RRIYG+LE QFR YY++A ++G TGENLL LLE RLDNVVY++GFG++RAEARQLV Sbjct: 61 QKARRIYGILEAQFRKYYEKAETMRGITGENLLKLLEMRLDNVVYKLGFGSSRAEARQLV 120 Query: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 +H +VNG+ V+I SYQVS DV+S+REK++ + K E + P WLE + Sbjct: 121 THGHFLVNGKKVDIISYQVSAGDVISVREKSRGTEKFKTFAENPK--TLPAWLEGNIENF 178 Query: 179 EGTFKRKPERSDLSADINEHLIVELYSK 206 EG +P R+D+ +NE LIVELYSK Sbjct: 179 EGKVIAEPTRADIDVPVNETLIVELYSK 206 >UniRef50_B8HXV1 30S ribosomal protein S4 n=431 Tax=cellular organisms RepID=RS4_CYAP4 Length = 204 Score = 236 bits (603), Expect = 3e-61, Method: Composition-based stats. Identities = 83/206 (40%), Positives = 116/206 (56%), Gaps = 4/206 (1%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 MARY GP+L++ RR G L + PGQHG + + S+Y ++L EKQK Sbjct: 1 MARYRGPRLRVIRRLGDLPGLTRK----AVPSRRAYPPGQHGQARKKRSEYAMRLEEKQK 56 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 +R YG+ ERQ Y + A R+ G+TG LL LLE RLDN+++R+G T ARQLV+H Sbjct: 57 LRFNYGLTERQLVRYVRRARRVSGSTGLALLQLLEMRLDNIIFRLGMAPTIPAARQLVNH 116 Query: 121 KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEG 180 + VNGRVV+I SYQ P + + IR K + + L+ PT LE+D K+ Sbjct: 117 GHVTVNGRVVSIPSYQCRPGNEIGIRNKENSRRLAEENLKFPGLANLPTHLELDKNKLMA 176 Query: 181 TFKRKPERSDLSADINEHLIVELYSK 206 ER ++ +NE L+VE YS+ Sbjct: 177 KVNSVVEREWVALQVNELLVVEYYSR 202 >UniRef50_A5GRL5 30S ribosomal protein S4 n=52 Tax=cellular organisms RepID=RS4_SYNR3 Length = 202 Score = 233 bits (596), Expect = 2e-60, Method: Composition-based stats. Identities = 90/206 (43%), Positives = 121/206 (58%), Gaps = 6/206 (2%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 M+RY G +L+++RR G L K PGQHG + + S+Y ++L EKQK Sbjct: 1 MSRYRGARLRVTRRLGDLPGLTRKA------AKRSYPPGQHGQARRKRSEYAIRLEEKQK 54 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 +R YGV ERQ Y K+A G+TG NLL LLE RLDNV +R+GFG T +RQLV+H Sbjct: 55 LRFNYGVSERQLVRYVKKARAQGGSTGTNLLKLLENRLDNVCFRLGFGPTIPGSRQLVNH 114 Query: 121 KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEG 180 + VNGRVV+IASYQ DV++IREK + + LE P LE++ K+ Sbjct: 115 GHVTVNGRVVDIASYQCKAGDVIAIREKKPSKKLAETNLEFPGLANIPPHLELEKSKLTA 174 Query: 181 TFKRKPERSDLSADINEHLIVELYSK 206 K ER ++ +INE L+VE YS+ Sbjct: 175 KVVGKCEREWVALEINELLVVEYYSR 200 >UniRef50_A0M574 30S ribosomal protein S4 n=23 Tax=Bacteria RepID=RS4_GRAFK Length = 201 Score = 232 bits (593), Expect = 4e-60, Method: Composition-based stats. Identities = 98/208 (47%), Positives = 127/208 (61%), Gaps = 9/208 (4%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG--ARKPRLSDYGVQLREK 58 MARY GPK K++R+ G +F + K PGQHG R+ + S+Y +QL EK Sbjct: 1 MARYTGPKTKIARKFGEAIFGDDK-----SFEKRNYPPGQHGNNRRRGKKSEYAIQLMEK 55 Query: 59 QKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 QK + YG+LERQFRN +++A R +G TGE LL L E RLDNVVYRMG +R ARQLV Sbjct: 56 QKAKYTYGILERQFRNMFEKATRAQGITGEVLLQLCESRLDNVVYRMGVAPSRRAARQLV 115 Query: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 H+ I VNG +VNI SY + DVV +REK+K + V+ +L W+ ++ K Sbjct: 116 GHRHITVNGELVNIPSYHLKAGDVVGVREKSKSLAVVQESLSNN--SSVYEWISWNSEKK 173 Query: 179 EGTFKRKPERSDLSADINEHLIVELYSK 206 EGTF P R + +INE IVELYSK Sbjct: 174 EGTFVAVPGRVQIPENINEQFIVELYSK 201 >UniRef50_A9B436 30S ribosomal protein S4 n=3 Tax=Bacteria RepID=RS4_HERA2 Length = 211 Score = 232 bits (593), Expect = 5e-60, Method: Composition-based stats. Identities = 116/211 (54%), Positives = 138/211 (65%), Gaps = 5/211 (2%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKI-EQAPGQHG--ARKPRLSDYGVQLRE 57 MARY GP KLSRREG DL LKSG + Q PGQHG R+ +LSDYGVQLRE Sbjct: 1 MARYTGPVCKLSRREGVDLMLKSGNSGRKVLERRGSQPPGQHGASVRRRQLSDYGVQLRE 60 Query: 58 KQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQL 117 KQKVRRIYGVLERQFR YY A R G TG LL +LE RLDNVV+R+G+ TRA+ARQL Sbjct: 61 KQKVRRIYGVLERQFRRYYGIATRTTGQTGAVLLQILERRLDNVVFRLGYAVTRAQARQL 120 Query: 118 VSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREK--PTWLEVDA 175 V+H I VNGR +I S V DV+ +R +++K+ K E + P+WL +DA Sbjct: 121 VNHGHITVNGRKTDIPSALVEVGDVIGVRAESRKRDYFKDLEETKQLNRVSPPSWLSLDA 180 Query: 176 GKMEGTFKRKPERSDLSADINEHLIVELYSK 206 GKMEG + P R +L INE LIVE YS+ Sbjct: 181 GKMEGVVQTFPSREELDMSINEQLIVEFYSR 211 >UniRef50_B9KZW1 30S ribosomal protein S4 n=56 Tax=Bacteria RepID=RS4_THERP Length = 217 Score = 231 bits (589), Expect = 1e-59, Method: Composition-based stats. Identities = 94/216 (43%), Positives = 131/216 (60%), Gaps = 10/216 (4%) Query: 1 MARYLGPKLKLSRREGTDLFLK------SGVRAIDTKCKIEQAPGQHGARKP---RLSDY 51 M RY+GP +L RREG L+LK + PGQHG + R S++ Sbjct: 1 MGRYIGPVCRLCRREGVKLYLKGERCFGPKCPIVKRHPNKNYPPGQHGPTQRAARRPSEF 60 Query: 52 GVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATR 111 +QLREKQK++R+YG+LERQFR ++ EA R G TG+NLL +LE RLDNVVYR+GF +R Sbjct: 61 ALQLREKQKLKRVYGILERQFRRHFDEAERRPGLTGDNLLQILESRLDNVVYRLGFADSR 120 Query: 112 AEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWL 171 +ARQLV H +VNGR +I SYQV P D++++R +++++ K E A+ + P WL Sbjct: 121 RQARQLVRHGHFLVNGRKTDIPSYQVRPGDIIAVRPESRRREYFKVLEETAKNKAVPAWL 180 Query: 172 EVDAGKMEGTFKRKPERSDLS-ADINEHLIVELYSK 206 D M G R P R ++ +N L+VE YS+ Sbjct: 181 SRDLETMSGRVLRLPTRDEIDIPPVNTQLVVEYYSR 216 >UniRef50_Q2JUD6 30S ribosomal protein S4 n=92 Tax=cellular organisms RepID=RS4_SYNJA Length = 203 Score = 230 bits (588), Expect = 2e-59, Method: Composition-based stats. Identities = 89/207 (42%), Positives = 116/207 (56%), Gaps = 7/207 (3%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIE-QAPGQHGARKPRLSDYGVQLREKQ 59 M+RY GP+LK+ RR G + + K PG HGA + + S+Y ++L EKQ Sbjct: 1 MSRYTGPRLKIIRRFGGL-----DLPGLTRKRPKNTNPPGMHGAERKKKSEYAIRLEEKQ 55 Query: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119 KVR YGV ERQ Y ++A R KG+TG LL +LE RLD +V+R+G T ARQLVS Sbjct: 56 KVRLNYGVSERQMLRYMRKARRSKGSTGLALLQMLEMRLDCIVFRLGMAPTIPAARQLVS 115 Query: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179 H I VNGR V I SY DV+++R K + V A E P +LE D K+ Sbjct: 116 HGHIEVNGRKVTIPSYGCKVGDVITVRNKESSRKLVAAYAEYPGL-FLPDYLEFDKEKLR 174 Query: 180 GTFKRKPERSDLSADINEHLIVELYSK 206 G K P R + A +NE L+VE YS+ Sbjct: 175 GRIKELPPREQICAPVNELLVVEFYSR 201 >UniRef50_Q4FUD2 30S ribosomal protein S4 n=313 Tax=cellular organisms RepID=RS4_PSYA2 Length = 213 Score = 229 bits (584), Expect = 6e-59, Method: Composition-based stats. Identities = 139/213 (65%), Positives = 167/213 (78%), Gaps = 7/213 (3%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKI-EQAPGQHGARKPRLSDYGVQLREKQ 59 MARY+GPKLKLSRREGTDL LKSGV+ D K K + PGQHG + + S+Y +QLREKQ Sbjct: 1 MARYIGPKLKLSRREGTDLGLKSGVKPYDVKTKKSARPPGQHGVSRNKSSEYSLQLREKQ 60 Query: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119 KV+RIYGVLERQF NYYKEAAR +G TGENLLA+LE RLDNVVYRMGFG+TRAEARQLVS Sbjct: 61 KVKRIYGVLERQFANYYKEAARKRGATGENLLAMLESRLDNVVYRMGFGSTRAEARQLVS 120 Query: 120 HKAIMVNG------RVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEV 173 H+ +MV VNI S Q+ DV++I+EK+++Q R+K A+ELA QR P WL+V Sbjct: 121 HRTVMVKKAGRDEFVRVNIPSIQLQDGDVIAIQEKSREQLRIKNAIELATQRGIPEWLDV 180 Query: 174 DAGKMEGTFKRKPERSDLSADINEHLIVELYSK 206 D K++GTFK+ P+R DL A+INE LIVELYSK Sbjct: 181 DHSKLQGTFKKAPDRIDLPAEINESLIVELYSK 213 >UniRef50_B5Y961 Ribosomal protein S4 n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y961_COPPD Length = 210 Score = 228 bits (582), Expect = 8e-59, Method: Composition-based stats. Identities = 89/210 (42%), Positives = 122/210 (58%), Gaps = 7/210 (3%) Query: 3 RYLGPKLKLSRREGTDLFLKSGVRAIDTKC---KIEQAPGQHG--ARKPRLSDYGVQLRE 57 +Y GP ++ RR G LFLK G + + KC + PGQHG R R ++YG++L+E Sbjct: 2 KYTGPSCRICRRSGVKLFLK-GEKCLSPKCPMERRAFPPGQHGPTRRGKRDTEYGLRLKE 60 Query: 58 KQKVRRIYGVLERQFRNYYKEAARLKGN-TGENLLALLEGRLDNVVYRMGFGATRAEARQ 116 KQK+R Y + E Q R Y+ A KG TG LL LLE RLD VV RMGF ++ AR Sbjct: 61 KQKLRHSYMITETQLRRYFSTAMSQKGVATGTALLQLLERRLDAVVQRMGFASSIKMARN 120 Query: 117 LVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAG 176 V H +MVNG+ V+I SY V P D +++ + K V+ ++ + E R WL VD Sbjct: 121 WVRHGHVMVNGKRVDIPSYLVKPGDRITLDKDLKDNPDVQKSIAMNEGRPNLEWLNVDVE 180 Query: 177 KMEGTFKRKPERSDLSADINEHLIVELYSK 206 +EGT+ R P R ++ +NE LIVE YS+ Sbjct: 181 NLEGTYLRVPSREEIPVAVNEQLIVEYYSR 210 >UniRef50_P56799 30S ribosomal protein S4, chloroplastic n=803 Tax=Eukaryota RepID=RR4_ARATH Length = 201 Score = 227 bits (579), Expect = 2e-58, Method: Composition-based stats. Identities = 74/206 (35%), Positives = 121/206 (58%), Gaps = 7/206 (3%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 M+RY GP+ K RR G + + +K + ++ +R + S Y ++L EKQK Sbjct: 1 MSRYRGPRFKKIRRLGA-------LPGLTSKRPKAGSDLRNQSRSVKKSQYRIRLEEKQK 53 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 +R YG+ E Q Y + A + KG+TG+ LL LLE RLDN+++R+G T +ARQLV+H Sbjct: 54 LRFHYGLTEHQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMALTIPQARQLVNH 113 Query: 121 KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEG 180 I+VNGR+V+I SY+ P D+++++++ ++ V+ L+ + E P L + + EG Sbjct: 114 GHILVNGRIVDIPSYRCKPRDIITVKDEQNSRTLVQNLLDSSAPEELPNHLTLHTFQYEG 173 Query: 181 TFKRKPERSDLSADINEHLIVELYSK 206 + +R + INE L+VE YS+ Sbjct: 174 LVNQIIDRKCVGLKINELLVVEYYSR 199 >UniRef50_Q1WT66 30S ribosomal protein S4 n=12 Tax=Bacteria RepID=RS4_LACS1 Length = 201 Score = 226 bits (577), Expect = 3e-58, Method: Composition-based stats. Identities = 99/208 (47%), Positives = 133/208 (63%), Gaps = 9/208 (4%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGA-RKPRLSDYGVQLREKQ 59 M+RY GP K+SRR G L + APGQHG R+ LS+YG+QLREKQ Sbjct: 1 MSRYTGPSWKVSRRLGFSLSGTGK-----ELSRRPYAPGQHGQDRRGSLSEYGLQLREKQ 55 Query: 60 KVRRIYGVLERQFRNYYKEAAR-LKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 K+R YG+ ERQF N +K A + +G G+N + LLE RLDNVVYR+G +TR +ARQLV Sbjct: 56 KLRMTYGLTERQFSNLFKRAGKIREGKHGDNFMILLERRLDNVVYRLGLASTRRQARQLV 115 Query: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 +H I V+G+ V+I SY+V P V+S+RE++K VK ALE R ++ D KM Sbjct: 116 NHGHITVDGKRVDIPSYEVEPGQVISLRERSKDLQIVKEALEAVVGRV--PFVNFDENKM 173 Query: 179 EGTFKRKPERSDLSADINEHLIVELYSK 206 EGT R P+R +L A+I+E L+VE Y++ Sbjct: 174 EGTLVRLPDREELDANIDEALVVEFYNR 201 >UniRef50_Q0ZJ18 30S ribosomal protein S4, chloroplastic n=973 Tax=Embryophyta RepID=RR4_VITVI Length = 201 Score = 224 bits (572), Expect = 1e-57, Method: Composition-based stats. Identities = 73/206 (35%), Positives = 119/206 (57%), Gaps = 7/206 (3%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 M+RY GP+ K RR G + + +K + ++ +R + S Y ++L EKQK Sbjct: 1 MSRYRGPRFKKIRRLGA-------LPGLTSKRPRAGSDLRNQSRSGKRSQYRIRLEEKQK 53 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 +R YG+ ERQ NY + A + KG TG LL LLE RLDN+++R+G +T ARQLV+H Sbjct: 54 LRFHYGLTERQLLNYVRIAGKAKGATGRVLLQLLEMRLDNILFRLGMASTIPGARQLVNH 113 Query: 121 KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEG 180 + I+VNGR+V+I SY+ P D+++ + K ++ ++ + + E P L + + +G Sbjct: 114 RHILVNGRIVDIPSYRCKPRDIITAGNEQKSRALIQNVFDSSSHEELPKHLTLHPFQFKG 173 Query: 181 TFKRKPERSDLSADINEHLIVELYSK 206 + + + + INE L+VE YS+ Sbjct: 174 LVNQIIDSNWVGLKINELLVVEYYSR 199 >UniRef50_A4WUP0 30S ribosomal protein S4 n=66 Tax=Bacteria RepID=RS4_RHOS5 Length = 206 Score = 223 bits (569), Expect = 3e-57, Method: Composition-based stats. Identities = 90/210 (42%), Positives = 127/210 (60%), Gaps = 9/210 (4%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKP-RLSDYGVQLREKQ 59 M + K K+ RR G +++ + K E PGQHG R+ +LSD+G QLR KQ Sbjct: 1 MTKRTSAKYKIDRRMGENIWGRPKSP----VNKREYGPGQHGQRRKNKLSDFGTQLRAKQ 56 Query: 60 KVRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 K++ YG + E+QFR Y EA R+KG+TGE L+ LLE RLD +VYR F T ARQ V Sbjct: 57 KLKGYYGDLTEKQFRKIYAEAERVKGDTGEMLVGLLERRLDAIVYRAKFVPTVFAARQFV 116 Query: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 +H + VNG+ VNI SY+ DV+ +RE++++ + V A +LAE R+ P ++EVD KM Sbjct: 117 NHGHVTVNGQRVNIGSYRCKEGDVIQVRERSRQLAIVLEATQLAE-RDVPDYIEVDYSKM 175 Query: 179 EGTFKRKPERSDLSADI--NEHLIVELYSK 206 TF R P D+ + +L+VE Y+K Sbjct: 176 TATFVRTPSLGDVPYPVVMEPNLVVEFYAK 205 >UniRef50_Q01WB9 30S ribosomal protein S4 n=301 Tax=Bacteria RepID=RS4_SOLUE Length = 210 Score = 223 bits (568), Expect = 3e-57, Method: Composition-based stats. Identities = 102/210 (48%), Positives = 136/210 (64%), Gaps = 4/210 (1%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDT--KCKIEQAPGQHGA-RKPRLSDYGVQLRE 57 MARY+GP + RREG L+LK + K PGQHG R ++ YG+QLRE Sbjct: 1 MARYIGPVCRQCRREGMKLYLKGERCHSEKCAIEKRNFIPGQHGKDRAKKIVGYGLQLRE 60 Query: 58 KQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQL 117 KQKVRR+YGVLERQFRN +++AA KG TGENL+ LE RLD+V+YRMGFG +RA+ARQ+ Sbjct: 61 KQKVRRVYGVLERQFRNAFEKAALQKGITGENLMQNLERRLDSVIYRMGFGTSRAQARQV 120 Query: 118 VSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGK 177 V H I VNGR NI S ++ D +++RE +K + + +A + P W+EVD Sbjct: 121 VRHGHINVNGRKCNIPSALINVGDEITVRETSKNNATILSARDATAHAPAPNWIEVDREG 180 Query: 178 MEGTFKRKPERSD-LSADINEHLIVELYSK 206 ++G + P+R D + +NE LIVELYSK Sbjct: 181 LKGRVQSLPKREDLVQIQLNEQLIVELYSK 210 >UniRef50_C9M7W9 Ribosomal protein S4 n=2 Tax=Synergistaceae RepID=C9M7W9_9BACT Length = 206 Score = 223 bits (568), Expect = 4e-57, Method: Composition-based stats. Identities = 91/205 (44%), Positives = 120/205 (58%), Gaps = 4/205 (1%) Query: 2 ARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKV 61 R PK K+ RR G ++F + + PG R + S YG+QL+EKQK+ Sbjct: 6 TRKTAPKGKIVRRLGANIFGNQKYDKL--LSRKATPPGGQPRRHGKQSIYGLQLQEKQKI 63 Query: 62 RRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHK 121 R YGV ERQ Y A +++G TG N+L LLE RLDNVVYR+GF TR +ARQLV H Sbjct: 64 RFSYGVSERQLHKVYTLAKKMEGVTGSNMLILLESRLDNVVYRLGFCTTRPQARQLVCHG 123 Query: 122 AIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGT 181 VNGR V+I S +VS DV+SIRE +K +K LE+A +P WL + EGT Sbjct: 124 HFAVNGRKVDIPSARVSAGDVISIRENSKDMKVLKENLEVASAVSQPAWLSLSGT--EGT 181 Query: 182 FKRKPERSDLSADINEHLIVELYSK 206 R PERS++ +E ++VE Y+K Sbjct: 182 VLRLPERSEIVCLADEQVVVEYYAK 206 >UniRef50_Q1CXF1 30S ribosomal protein S4 B n=2 Tax=Cystobacterineae RepID=RS4B_MYXXD Length = 210 Score = 222 bits (566), Expect = 7e-57, Method: Composition-based stats. Identities = 77/208 (37%), Positives = 117/208 (56%), Gaps = 2/208 (0%) Query: 1 MARYLGPKLKLSRREGTDLFL-KSGVRAIDTKCKIEQAPGQHGAR-KPRLSDYGVQLREK 58 MAR LGP+ K+ RR G L + D + PGQHGA + +SD+ +LREK Sbjct: 1 MARDLGPRGKMCRRLGIPLSRITAKDPDKDPVLRRPYPPGQHGATARTSVSDFARRLREK 60 Query: 59 QKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 QK++ YG++E+Q R ++EA+R GNTG LL LLE RLD++V R G + +ARQ V Sbjct: 61 QKLKLYYGLMEKQCRAVFQEASRAPGNTGTVLLQLLESRLDSLVLRAGLATSIRQARQFV 120 Query: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 H + V+G+ +I S++V P V +K + V+ + + R P +++V Sbjct: 121 RHGYLHVDGKRADIPSFRVKPGSEVRFHAAHQKLAVVQESFSRMKSRSVPAYVQVLGEGE 180 Query: 179 EGTFKRKPERSDLSADINEHLIVELYSK 206 + R PER ++ D+NE IVE Y++ Sbjct: 181 GLRYVRLPEREEIPVDVNEPFIVEYYAQ 208 >UniRef50_C6PD21 RNA-binding S4 domain protein n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PD21_CLOTS Length = 198 Score = 222 bits (565), Expect = 8e-57, Method: Composition-based stats. Identities = 95/205 (46%), Positives = 132/205 (64%), Gaps = 8/205 (3%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG-ARKPRLSDYGVQLREKQ 59 MAR + PK ++ R G L ++ K APGQHG AR +LS+YG +L EKQ Sbjct: 1 MARTIVPKHRMCRIVGHPLCGSPKCPSL----KRPYAPGQHGLARGKKLSEYGRRLLEKQ 56 Query: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119 K++ IY V ERQ+R Y+++A + K T E LL+LLE RLDN+VYRMGF T ARQLVS Sbjct: 57 KLKSIYNVKERQYRRYFEKALKSKEPTSEKLLSLLERRLDNIVYRMGFAPTIYSARQLVS 116 Query: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179 H I+VNG+ VNI SY+V+ DVVS++EK+K +K ++ + P ++ VD KME Sbjct: 117 HGHILVNGKKVNIPSYEVNVGDVVSVKEKSKNMPLIKQSI---GTNDIPPYINVDVDKME 173 Query: 180 GTFKRKPERSDLSADINEHLIVELY 204 G + P RS++ +I++HL+VE Y Sbjct: 174 GKLIKLPRRSEIPVEIDDHLLVEFY 198 >UniRef50_C9KPD3 Ribosomal protein S4 n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KPD3_9FIRM Length = 197 Score = 221 bits (563), Expect = 1e-56, Method: Composition-based stats. Identities = 86/206 (41%), Positives = 118/206 (57%), Gaps = 9/206 (4%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 MA P LK R G + + + + + ++S+YG QL+EKQK Sbjct: 1 MAIDRVPALKRCRALGLEPAVIGRSKESKRQLRR---------TNRKVSEYGTQLKEKQK 51 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 + IYGVLE+QFR YY +A +++G TGENLL LLE RLDNVVYR+G TR +ARQLV H Sbjct: 52 AKFIYGVLEKQFRGYYDKAKKMQGVTGENLLGLLERRLDNVVYRLGLANTRRQARQLVRH 111 Query: 121 KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEG 180 VNG+ V+I S V+ DV+++ EK++ + K E + P WL+ D + G Sbjct: 112 GHFTVNGKRVDIPSALVNAGDVIAVAEKSQSNAFFKELKESSNALSAPAWLQADQANLTG 171 Query: 181 TFKRKPERSDLSADINEHLIVELYSK 206 T R P R ++ +NE IVELYSK Sbjct: 172 TVTRFPNRDEIDVPVNEQAIVELYSK 197 >UniRef50_Q2JFE9 30S ribosomal protein S4 n=124 Tax=Bacteria RepID=RS4_FRASC Length = 209 Score = 220 bits (562), Expect = 2e-56, Method: Composition-based stats. Identities = 103/210 (49%), Positives = 125/210 (59%), Gaps = 5/210 (2%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCK---IEQAPGQHGARKPRLSDYGVQLRE 57 MARY G K RRE T LFLK G + KC PG+HG + + S+Y +Q RE Sbjct: 1 MARYTGADCKRCRREKTKLFLK-GSKCDTPKCPIEIRPYPPGEHGRGRTKDSEYLLQKRE 59 Query: 58 KQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQL 117 KQK RIYGVLE+QFR YY EA R G TG+ LL +LE RLDNVVYR GF +R ARQ Sbjct: 60 KQKCARIYGVLEKQFRGYYDEANRRAGKTGDELLKILESRLDNVVYRGGFAPSRDAARQA 119 Query: 118 VSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQ-REKPTWLEVDAG 176 V H + VNGR V+I SY++S ND+V I KA++ + A E A Q R P WLEV Sbjct: 120 VRHGHVQVNGRKVDIPSYRISENDIVEIAPKARELTPFIVARETAGQGRAVPAWLEVIPS 179 Query: 177 KMEGTFKRKPERSDLSADINEHLIVELYSK 206 ++ P R + + E LIVELYSK Sbjct: 180 QLRILVHSLPARQVIDTQVQEQLIVELYSK 209 >UniRef50_Q1H2K1 30S ribosomal protein S4 n=6 Tax=Proteobacteria RepID=RS4_METFK Length = 205 Score = 219 bits (558), Expect = 5e-56, Method: Composition-based stats. Identities = 80/207 (38%), Positives = 114/207 (55%), Gaps = 7/207 (3%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR--KPRLSDYGVQLREK 58 M+R+ GP+LK+ R G DL S T PGQHGA+ + + SD+GV+L+EK Sbjct: 1 MSRFTGPRLKVMRALGIDLPGLSRK----TIEARPTPPGQHGAKNTRRKKSDFGVKLQEK 56 Query: 59 QKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 QK+R YG+ E+Q R +A + K TGE LL LLE RLDNVV+R GF T A ARQLV Sbjct: 57 QKLRFNYGLSEKQLRRLMVDARKGKSPTGETLLQLLERRLDNVVFRAGFAPTIAAARQLV 116 Query: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 +H+ +M+NG+ VNI S +V D +S++ + K V L +P W+ Sbjct: 117 THRHVMLNGKSVNIPSIRVRVGDEISLKASSTKLPIVVETLANPPL-TRPEWISWAEQSQ 175 Query: 179 EGTFKRKPERSDLSADINEHLIVELYS 205 + P D+ ++ +VE Y+ Sbjct: 176 QAKVAHLPAAEDVPFPVDVQQVVEYYA 202 >UniRef50_A9MAK7 30S ribosomal protein S4 n=56 Tax=Alphaproteobacteria RepID=RS4_BRUC2 Length = 205 Score = 219 bits (558), Expect = 6e-56, Method: Composition-based stats. Identities = 95/210 (45%), Positives = 134/210 (63%), Gaps = 9/210 (4%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKP-RLSDYGVQLREKQ 59 M++ K K+ RR G +++ + + E PGQHG R+ +LSD+GVQLR KQ Sbjct: 1 MSKRESAKYKIDRRLGENIWGRPKSP----VNRREYGPGQHGQRRKGKLSDFGVQLRAKQ 56 Query: 60 KVRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 K++ YG + E+QFR Y+EAAR KG+TGENL+ LLE RLD VVYR F T ARQ + Sbjct: 57 KLKGFYGDISEKQFRKTYEEAARRKGDTGENLIGLLESRLDAVVYRAKFVPTIFAARQFI 116 Query: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 +H + VNGR VNI SY++ DVV +REK+K+ + V A++LAE R+ P +++VD KM Sbjct: 117 NHGHVNVNGRRVNIQSYRLKVGDVVEVREKSKQLAIVLEAVQLAE-RDVPDYIDVDHNKM 175 Query: 179 EGTFKRKPERSDLSADI--NEHLIVELYSK 206 T+ R P SD+ + +L+VE YS+ Sbjct: 176 VATYNRVPGLSDVPYAVQMEPNLVVEFYSR 205 >UniRef50_D1C704 Ribosomal protein S4 n=2 Tax=Bacteria RepID=D1C704_SPHTD Length = 203 Score = 218 bits (556), Expect = 8e-56, Method: Composition-based stats. Identities = 91/207 (43%), Positives = 133/207 (64%), Gaps = 5/207 (2%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGA-RKPRLSDYGVQLREKQ 59 MARY GPK K+SRREG +L R+ + +++ PG H R R+++YG QLREKQ Sbjct: 1 MARYTGPKHKISRREGINLTGT---RSRSLERRLKTPPGAHAHARPRRMTEYGRQLREKQ 57 Query: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119 K++R +G+LE+QFR +++A R K TG L+ LLE RLDNVVYR+GF TR ARQLV+ Sbjct: 58 KLKRHFGMLEKQFRRTFQDARRSKEPTGTALVKLLESRLDNVVYRLGFTPTRPMARQLVN 117 Query: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179 H ++VNGR V+I SY+VSP D +++ EKA + V+ AL+ A + P+WL + + Sbjct: 118 HGHVLVNGRRVDIPSYRVSPGDTIALTEKAAEIPDVQEALQDAGH-QIPSWLSREGTQPV 176 Query: 180 GTFKRKPERSDLSADINEHLIVELYSK 206 G +P +L ++ LI+ Y++ Sbjct: 177 GRVISEPNPEELDIPVDIELIIAFYAR 203 >UniRef50_Q1ACM7 30S ribosomal protein S4, chloroplastic n=1359 Tax=Streptophytina RepID=RR4_CHAVU Length = 206 Score = 216 bits (550), Expect = 4e-55, Method: Composition-based stats. Identities = 75/206 (36%), Positives = 115/206 (55%), Gaps = 2/206 (0%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 M+RY GP+LK+ RR G + +K + + + ++S Y ++L EKQK Sbjct: 1 MSRYRGPRLKIVRRLGPLPGFTQKL--YKSKSQYLGSSTTSSSSNKKISQYNIRLLEKQK 58 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 +R YG+ ERQ Y A KG TG+ LL LLE RLDN+V+R+G T ARQLV+H Sbjct: 59 LRFYYGLTERQLLKYVTIARNAKGPTGQVLLQLLEMRLDNIVFRLGMAPTIPAARQLVNH 118 Query: 121 KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEG 180 + I+VN VNI SY D +S++++ + ++ + A + + P+ L ++ K EG Sbjct: 119 RHILVNDFTVNIPSYSCKLGDKISVQKRFESKTNIFANSTQSASLKVPSHLTLNPAKNEG 178 Query: 181 TFKRKPERSDLSADINEHLIVELYSK 206 + +R + A INE L+VE YS+ Sbjct: 179 LVHQIVDREFIGAKINELLVVEYYSR 204 >UniRef50_A9BFZ1 30S ribosomal protein S4 n=32 Tax=Bacteria RepID=RS4_PETMO Length = 211 Score = 216 bits (550), Expect = 4e-55, Method: Composition-based stats. Identities = 99/211 (46%), Positives = 138/211 (65%), Gaps = 5/211 (2%) Query: 1 MARYLGPKLKLSRREGTDLFLKSG--VRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREK 58 MARY+GP KLSRREG +L+LK K PGQHG +K +L+ Y +QLR K Sbjct: 1 MARYIGPLEKLSRREGINLYLKGKRSYTEKSALRKRNYVPGQHGRQKQKLTQYAMQLRSK 60 Query: 59 QKVRRIYGVLERQFRNYYKEAARLK-GNTGENLLALLEGRLDNVVYRMGFGATRAEARQL 117 Q ++R+YG++ERQFRN ++EA R + G TGE L+ LLE RLD+VVY+MGF R ARQ+ Sbjct: 61 QALKRMYGLMERQFRNTFEEAERSRSGETGEVLMQLLERRLDSVVYQMGFAPNRRTARQI 120 Query: 118 VSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQ--REKPTWLEVDA 175 V+H I+VNG+ VNI SY+V DV+ ++EK++ +V+ LEL ++ R P WL V+ Sbjct: 121 VTHGHILVNGKKVNIPSYRVKVGDVIEVKEKSRNIQQVREGLELVQEGYRNIPNWLNVEI 180 Query: 176 GKMEGTFKRKPERSDLSADINEHLIVELYSK 206 GTF+R P+ ++ + I+ELYSK Sbjct: 181 ENFRGTFQRLPKIDEMDVPVPLTNIIELYSK 211 >UniRef50_C1ABG6 30S ribosomal protein S4 n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ABG6_GEMAT Length = 205 Score = 214 bits (546), Expect = 1e-54, Method: Composition-based stats. Identities = 74/210 (35%), Positives = 111/210 (52%), Gaps = 9/210 (4%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGA---RKPRLSDYGVQLRE 57 M+R +GP+LK+ RR G L + A + PGQHG R+ ++S Y ++L Sbjct: 1 MSR-VGPRLKIIRRLGIQLPGLTAKDA----ERRPYPPGQHGQSTARRRKVSLYRLRLEA 55 Query: 58 KQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQL 117 KQ +R YG+ E Q R Y A G TG+ +LA+LE RLDNVV+R+GF T ARQL Sbjct: 56 KQALRFYYGISENQLRRTYAMAKTRPGRTGDVMLAMLEARLDNVVFRLGFARTIPAARQL 115 Query: 118 VSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWL-EVDAG 176 V H + VNG V+ Y++ +++ + + + V+ L+ Q + P WL + D Sbjct: 116 VVHGHVYVNGSRVDRPGYRLRTGEMIKLDPRMAENPHVQEQLQRGPQVKLPGWLAKTDDA 175 Query: 177 KMEGTFKRKPERSDLSADINEHLIVELYSK 206 +EG P R + N+ IVE Y++ Sbjct: 176 PLEGRMIAPPTRESVPFACNDAAIVEYYAR 205 >UniRef50_D0JAU4 30S ribosomal protein S4 n=1 Tax=Blattabacterium sp. (Blattella germanica) str. Bge RepID=D0JAU4_BLASB Length = 208 Score = 211 bits (537), Expect = 1e-53, Method: Composition-based stats. Identities = 90/208 (43%), Positives = 129/208 (62%), Gaps = 8/208 (3%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHG--ARKPRLSDYGVQLREK 58 MA+Y+GPK K+SRR G ++ + + + GQHG R+ + S+Y +QL EK Sbjct: 7 MAKYIGPKTKISRRFGECIYGEDKY-----FDRRKYPSGQHGNNRRRGKRSEYFIQLIEK 61 Query: 59 QKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 QK + YG+LERQF + EAAR KG TGE LL E RLDN+V+R+ F +R+ ARQ+V Sbjct: 62 QKAKYTYGILERQFEKLFFEAARKKGITGELLLQACESRLDNIVFRLKFAPSRSSARQIV 121 Query: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 SH+ I VN R+VNI S+++ P D + +REK+KK + +++ + WL D M Sbjct: 122 SHRHIFVNDRIVNIPSFRLKPGDKIGVREKSKKHPIILDSIQK-KTGTLVEWLIFDEKNM 180 Query: 179 EGTFKRKPERSDLSADINEHLIVELYSK 206 G F+ P+R+ + +I E LIVELYSK Sbjct: 181 VGIFRVMPKRTQIPENIKEQLIVELYSK 208 >UniRef50_A0T0H2 30S ribosomal protein S4, chloroplastic n=4 Tax=stramenopiles RepID=RR4_PHATR Length = 203 Score = 211 bits (537), Expect = 1e-53, Method: Composition-based stats. Identities = 86/208 (41%), Positives = 128/208 (61%), Gaps = 8/208 (3%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR--KPRLSDYGVQLREK 58 M+RY GPKLK+SRR GT L + K PG+ G +L++YGV+L EK Sbjct: 1 MSRYRGPKLKISRRLGTLPGLTTK------KSNKLNRPGKDGNTDIGKKLTEYGVRLEEK 54 Query: 59 QKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 QK++ YG+ E+Q Y KEA R +G TG LL LLE RLD + + +GF + A+ARQLV Sbjct: 55 QKLKFNYGLTEKQLFRYVKEARRRQGVTGLILLQLLEMRLDTLCFTLGFAKSLAQARQLV 114 Query: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 +H I +N +VV+I S+Q ND++SI+EK+ ++ V+ ++ + RE PT L D K+ Sbjct: 115 NHGHITINKKVVSIPSFQCRLNDIISIKEKSSSKTLVETNIKNNQVREIPTHLRFDTVKL 174 Query: 179 EGTFKRKPERSDLSADINEHLIVELYSK 206 E +R+D+S ++E L++E YS+ Sbjct: 175 EAIVLDYCDRNDVSLQLDELLVIEHYSR 202 >UniRef50_C3PN57 30S ribosomal protein S4 n=41 Tax=cellular organisms RepID=RS4_RICAE Length = 205 Score = 211 bits (537), Expect = 1e-53, Method: Composition-based stats. Identities = 82/210 (39%), Positives = 116/210 (55%), Gaps = 9/210 (4%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKP-RLSDYGVQLREKQ 59 M + + K K SRR G L+ S D PGQHG + SDYG+ L+ KQ Sbjct: 1 MTKIVRSKYKASRRLGVSLWGDSK----DAFNTRNYRPGQHGQNTMIKTSDYGLHLKAKQ 56 Query: 60 KVRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 +++ YG V E+QFRN + A ++KGNTGEN + LLE RLD VVYRM T ARQLV Sbjct: 57 RLKCHYGRVTEKQFRNIFALAQKMKGNTGENFIGLLESRLDTVVYRMNIAPTIFAARQLV 116 Query: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 SH I +NG+ +IAS ++ DV+ ++E K+ ++ ++ Q P +L D + Sbjct: 117 SHGHIKLNGKKADIASIRLKAGDVIEVKESVKQIPLIQESVSKQGQ-TTPGYLSFDVPSL 175 Query: 179 EGTFKRKPERSDLSADI--NEHLIVELYSK 206 G + R P SD+ HL++ELYS+ Sbjct: 176 TGKYLRVPALSDVPYPFEAEVHLVIELYSR 205 >UniRef50_D2BEX9 30S ribosomal protein S4 n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2BEX9_STRRD Length = 204 Score = 208 bits (531), Expect = 6e-53, Method: Composition-based stats. Identities = 77/207 (37%), Positives = 113/207 (54%), Gaps = 7/207 (3%) Query: 3 RYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR--KPRLSDYGVQLREKQK 60 RY GPK++LSRR G L +A+ + PG+HG + + + DYG++L EKQK Sbjct: 2 RYTGPKVRLSRRAGVPLT----RKAVRYFEERPYPPGEHGRKTNRRQTGDYGLRLMEKQK 57 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 +R Y V ERQ R Y+ A R G +G L+ LLE RL ++V R G + ARQ V+H Sbjct: 58 LRWYYDVSERQMRRYWDMALRSTGRSGAELVVLLESRLASLVLRAGLAPSIYAARQYVTH 117 Query: 121 KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELA-EQREKPTWLEVDAGKME 179 I V+GR V+I SY V P V+++R++++ AA E +L VD + Sbjct: 118 GHITVDGRKVDIPSYLVKPGQVIAVRQRSRAMQPFVAAAEGTYADDRIAPYLSVDHADLR 177 Query: 180 GTFKRKPERSDLSADINEHLIVELYSK 206 T +P R + ++E L+VE YS+ Sbjct: 178 FTVVGRPAREQIVVPVDEQLVVEFYSR 204 >UniRef50_Q47R66 30S ribosomal protein S4 n=2 Tax=Nocardiopsaceae RepID=RS4_THEFY Length = 203 Score = 207 bits (526), Expect = 2e-52, Method: Composition-based stats. Identities = 77/206 (37%), Positives = 114/206 (55%), Gaps = 6/206 (2%) Query: 3 RYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR-KPRLSDYGVQLREKQKV 61 RY GPK++LSRR G L +A+ K PG+HG R + SDY V+ EKQK+ Sbjct: 2 RYTGPKVRLSRRAGVPLT----RKAVKYFEKRPYPPGEHGRRVRRSTSDYAVRQAEKQKL 57 Query: 62 RRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHK 121 R Y + E+Q Y+ A + G TGE ++A LE RL V+ R GF A+ ARQ ++H Sbjct: 58 RWYYDLSEKQLARVYENAKKRPGRTGEEMIAELELRLATVLLRAGFAASIYAARQFINHG 117 Query: 122 AIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALE-LAEQREKPTWLEVDAGKMEG 180 I V+G+ V+I SYQV P +VS+REK++K A E + + ++L V + Sbjct: 118 HITVDGKKVDIPSYQVKPGQIVSVREKSRKLVPFIEAAEGVHADEKIASYLAVSHKDLTI 177 Query: 181 TFKRKPERSDLSADINEHLIVELYSK 206 +P+R + +E L+VE Y++ Sbjct: 178 AVVDRPKREQVPVPFDEQLVVEYYAR 203 >UniRef50_C9RJV5 Ribosomal protein S4 n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RJV5_FIBSS Length = 201 Score = 207 bits (526), Expect = 3e-52, Method: Composition-based stats. Identities = 82/207 (39%), Positives = 116/207 (56%), Gaps = 7/207 (3%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRL-SDYGVQLREKQ 59 M+ + GPK K++R G + K+ + APGQHG + + S Y QL EKQ Sbjct: 1 MSSFRGPKGKVARSLGVAVSQKTQK----ALDRRNFAPGQHGQTRKKSASVYKQQLVEKQ 56 Query: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119 ++R Y + E Q YKEA R +G+ G+NL+ LLE RLD VVYRMGF T ARQ V+ Sbjct: 57 RLRFTYNISEAQLAKAYKEANRREGSAGDNLMILLETRLDAVVYRMGFARTIFAARQYVA 116 Query: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179 H VNG S + DV+++RE++K+ ++K A +A P +L VD GKM+ Sbjct: 117 HGHFTVNGVRSFSPSRLIKAGDVIAVREQSKEHVQIKEA--IASAAAAPEYLSVDLGKMQ 174 Query: 180 GTFKRKPERSDLSADINEHLIVELYSK 206 GT + P R + + E L+VE YS+ Sbjct: 175 GTLVKLPLRDQIPVKLEEQLVVEYYSR 201 >UniRef50_C1TPK7 SSU ribosomal protein S4P n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TPK7_9BACT Length = 205 Score = 206 bits (525), Expect = 4e-52, Method: Composition-based stats. Identities = 80/205 (39%), Positives = 114/205 (55%), Gaps = 5/205 (2%) Query: 2 ARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKV 61 R PK K+ RR G ++F + D + + R + S YG QL EKQK+ Sbjct: 6 NRKTAPKGKMVRRFGVNVFGNTK---YDRLLAKKSGANKKNRRPAKQSIYGQQLLEKQKI 62 Query: 62 RRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHK 121 R YGV E+Q R Y +A G G N+L LLE RLDNVVYR+G +TR +ARQLV H Sbjct: 63 RFAYGVSEKQLRAAYAKAKNQGGVAGHNMLILLESRLDNVVYRLGLCSTRPQARQLVRHG 122 Query: 122 AIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGT 181 +N R V+I S V P DV+++ EK+++ ++ E+A KP WL ++ M G Sbjct: 123 HFTLNDRKVDIPSALVKPGDVIAVAEKSREMKVLRENSEVASAVSKPGWLSLNG--MSGK 180 Query: 182 FKRKPERSDLSADINEHLIVELYSK 206 +R PER ++ +E ++VE YS+ Sbjct: 181 VERLPERQEIPTIADEQIVVEYYSR 205 >UniRef50_B7T1T6 Ribosomal protein S4 n=1 Tax=Vaucheria litorea RepID=B7T1T6_VAULI Length = 204 Score = 206 bits (524), Expect = 5e-52, Method: Composition-based stats. Identities = 78/209 (37%), Positives = 120/209 (57%), Gaps = 10/209 (4%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRL---SDYGVQLRE 57 MARYLGP+LK+ RR G + + +K ++ GQ + + +L SDY ++L E Sbjct: 1 MARYLGPRLKIIRRFG-------NLPGLTSKIITKKPSGQQASNQKKLQKSSDYKIRLFE 53 Query: 58 KQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQL 117 KQK+R YG+ ERQ R Y EA R KG+T L+ LLE RLD +++R+G T ARQ Sbjct: 54 KQKLRYNYGLTERQLRKYVSEARRKKGSTAFYLMQLLEMRLDTIIFRLGLAPTIPAARQF 113 Query: 118 VSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGK 177 V+H I++N + +NI S+Q P D+++I+ K + V+ +L P L ++ Sbjct: 114 VNHGHILINKKKINIPSFQCHPTDIITIKNKKGTKQLVEKSLANPRFSTLPNHLTLNTKL 173 Query: 178 MEGTFKRKPERSDLSADINEHLIVELYSK 206 ++ K R DLS ++N+ LIVE Y++ Sbjct: 174 LQAEVKDIVIRKDLSFEVNDLLIVEYYAR 202 >UniRef50_Q2SSN9 30S ribosomal protein S4 n=25 Tax=Mycoplasmataceae RepID=RS4_MYCCT Length = 208 Score = 204 bits (520), Expect = 1e-51, Method: Composition-based stats. Identities = 90/208 (43%), Positives = 134/208 (64%), Gaps = 6/208 (2%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRL--SDYGVQLREK 58 M+R++G K SRR G + K PGQHG + ++ S+YG QL+EK Sbjct: 1 MSRFIGSTFKKSRRFGFSILETGK--EFSKGKKRITTPGQHGKERAKVKVSEYGQQLQEK 58 Query: 59 QKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 QKV+ +YG+ ERQFRN + +A +++G G N L LLE RLDN+VYR+GF ATR ARQLV Sbjct: 59 QKVKFMYGLSERQFRNTFAKAKKMQGILGTNFLVLLESRLDNIVYRLGFSATRQGARQLV 118 Query: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 +H I+VNG+ V+I SY +S D+V ++ KK +V AL+ E +++V+ ++ Sbjct: 119 NHGHILVNGKKVDIPSYLLSVGDLVEVKASMKKNEKVLEALQNNEA--TLEFVKVNKNEV 176 Query: 179 EGTFKRKPERSDLSADINEHLIVELYSK 206 +G F R PER++L+++I+E LIVE Y++ Sbjct: 177 KGEFVRLPERNELNSEISESLIVEWYNR 204 >UniRef50_Q3KL69 30S ribosomal protein S4 n=17 Tax=Chlamydiales RepID=RS4_CHLTA Length = 209 Score = 204 bits (519), Expect = 2e-51, Method: Composition-based stats. Identities = 79/210 (37%), Positives = 119/210 (56%), Gaps = 9/210 (4%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 MARY GPK +++RR G ++F + + + PGQHG ++ + SDYG+QL EKQK Sbjct: 1 MARYCGPKNRIARRFGANIFGRGRNPLL----RKPNPPGQHGMQRKKKSDYGLQLEEKQK 56 Query: 61 VRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119 ++ YG +LE+Q YKE +GN + L E RLDN+VYR+GF T A+QLVS Sbjct: 57 LKACYGMILEKQLVKAYKEVVNKQGNVAQMFLEKFECRLDNIVYRLGFAKTIFAAQQLVS 116 Query: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179 H ++VNG+ V+ S+ V P +S++EK+K+ + V +LE +Q P +L +D + Sbjct: 117 HGHVLVNGKKVDRRSFFVRPGMQISLKEKSKRLAIVTESLENKDQSSLPAYLSLDKAAFK 176 Query: 180 GTFKRKPERSDL----SADINEHLIVELYS 205 G PE + +N +I E S Sbjct: 177 GELVVAPELDQIASQLPLPVNVSVICEFLS 206 >UniRef50_B7J2H5 30S ribosomal protein S4 n=21 Tax=Borrelia RepID=RS4_BORBZ Length = 208 Score = 203 bits (518), Expect = 2e-51, Method: Composition-based stats. Identities = 88/208 (42%), Positives = 124/208 (59%), Gaps = 4/208 (1%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKP-RLSDYGVQLREKQ 59 M R K KL RR G ++F + I K PG HG + ++++YG QL EKQ Sbjct: 1 MNRKQIAKGKLVRRFGINIFEQPKYDKILKK--KPHPPGMHGKARKAKITEYGKQLIEKQ 58 Query: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119 K++ YGV ERQ N +KEA + G TG+NLL++LE R+DNVVYR GF +RA ARQ+VS Sbjct: 59 KIKFTYGVSERQLTNTFKEAKKHHGVTGDNLLSILERRIDNVVYRAGFAISRAHARQIVS 118 Query: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALEL-AEQREKPTWLEVDAGKM 178 H I++NGR V I S + ND + I+EK + +++ +E + R PTW+EV+A + Sbjct: 119 HGIIILNGRRVTIPSIILRANDQIQIKEKDSLKKLIRSNIEKTSSLRNLPTWIEVNADDL 178 Query: 179 EGTFKRKPERSDLSADINEHLIVELYSK 206 K P R ++ NE ++VE YSK Sbjct: 179 NIKVKHAPSRDEIPTLANEQMVVEYYSK 206 >UniRef50_Q7UXM6 30S ribosomal protein S4 n=6 Tax=Planctomycetaceae RepID=RS4_RHOBA Length = 202 Score = 203 bits (516), Expect = 4e-51, Method: Composition-based stats. Identities = 73/206 (35%), Positives = 110/206 (53%), Gaps = 4/206 (1%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 MARY GPK +++RR GT L+ +G A + Q PG H + S+YG L EKQK Sbjct: 1 MARYTGPKARINRRLGTMLYETAG--AARAMDRRPQPPGMHTRGRR-PSNYGAALMEKQK 57 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 ++ YG+ ERQ R Y++ R GNTGE LL + E RLDNVV R+GF TR +ARQ ++H Sbjct: 58 IKHYYGLGERQLRRYFENVGRKSGNTGELLLLMCERRLDNVVRRVGFTKTRPQARQGITH 117 Query: 121 KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEG 180 VNG V Y + D++ +R + ++ + + + W+ D+ + Sbjct: 118 GHFRVNGVKVTKPGYMLRAGDLIEVRGRENLKNLYRGVIANSPPDGL-DWVSFDSETLRA 176 Query: 181 TFKRKPERSDLSADINEHLIVELYSK 206 T P D+S ++ + +VE S+ Sbjct: 177 TVLSLPGAVDISLPVDANSVVEFLSR 202 >UniRef50_D1J7L7 30S ribosomal protein S4 n=2 Tax=Mycoplasma RepID=D1J7L7_MYCHP Length = 199 Score = 202 bits (515), Expect = 5e-51, Method: Composition-based stats. Identities = 84/206 (40%), Positives = 120/206 (58%), Gaps = 7/206 (3%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 M++++G K SRR G L + K APGQHGA++ + SDY + + EKQK Sbjct: 1 MSKFVGSMFKKSRRYGISLLENNK--EFTKGKKRTTAPGQHGAKRSKPSDYQLHMYEKQK 58 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 VR +YG+ ERQF+N + + ++ G TG NLL +E RLDN+V+R GF TRA+ARQLV+H Sbjct: 59 VRYMYGLNERQFKNLFIKVSKKAGVTGINLLQTVESRLDNLVFRAGFARTRAQARQLVNH 118 Query: 121 KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEG 180 V+G NI S V V+ ++E + +K A+E+ WL + Sbjct: 119 GHFTVDGCKANIPSMIVKVGSVIELKEALQNNVAIKDAIEVM---TVAPWLT--KENFKV 173 Query: 181 TFKRKPERSDLSADINEHLIVELYSK 206 TF R PER++ + DINE LIVE Y++ Sbjct: 174 TFTRLPERNEFAKDINESLIVEYYNR 199 >UniRef50_UPI00016B2693 ribosomal protein S4 n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B2693 Length = 205 Score = 201 bits (512), Expect = 1e-50, Method: Composition-based stats. Identities = 90/209 (43%), Positives = 121/209 (57%), Gaps = 7/209 (3%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGA-RKPRLSDYGVQLREKQ 59 MAR P +K SRREG L K+ + PG+H R+ + S Y QLREKQ Sbjct: 1 MARDTSPIVKQSRREGYALHPKA----HKIMVRKSGIPGEHAHGRQGKPSLYLTQLREKQ 56 Query: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119 KVRR YG+LE+QF KEA R KG GENLL LLE RLDN VYR GF ++R ARQLVS Sbjct: 57 KVRRTYGLLEKQFSRLMKEATRKKGLAGENLLQLLERRLDNAVYRAGFASSRRAARQLVS 116 Query: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKP--TWLEVDAGK 177 H ++NGR V+I S ++ D +S+R K+ K ++ + + +W++ D Sbjct: 117 HGHFILNGRRVDIPSIRLKAGDEISVRPKSTKSGYFTHIDDIVKNSNQTALSWMKSDVKG 176 Query: 178 MEGTFKRKPERSDLSADINEHLIVELYSK 206 ++ + P+R + DINE LIVE YS+ Sbjct: 177 LKFSITGNPKREEAEPDINEQLIVEYYSR 205 >UniRef50_A9KJG7 30S ribosomal protein S4 n=79 Tax=Bacteria RepID=RS4_CLOPH Length = 198 Score = 199 bits (507), Expect = 4e-50, Method: Composition-based stats. Identities = 105/207 (50%), Positives = 129/207 (62%), Gaps = 10/207 (4%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 MAR + P LK R G L+ ID K A ++S+YG QLREKQK Sbjct: 1 MARDMSPVLKRCRALG----LEPTFLGIDKKSNRNFA-----RAGKKISEYGTQLREKQK 51 Query: 61 VRRIYGVLERQFRNYYKEAARLK-GNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119 + IYGVLE+ FRN + +A +LK G TGENLL LLE RLDNV++RMG+G TR EARQ+V Sbjct: 52 AKFIYGVLEKPFRNNFDKAKKLKYGTTGENLLILLELRLDNVMFRMGYGRTRTEARQIVD 111 Query: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179 HK ++VNG+ VNI SYQV DV+SI+EK K R K LE+ + R P WLE D + Sbjct: 112 HKHVLVNGKCVNIPSYQVKAGDVISIKEKCKSAQRYKDILEVTDGRTVPAWLEADHENLT 171 Query: 180 GTFKRKPERSDLSADINEHLIVELYSK 206 GT K P R + +NE LIVELYSK Sbjct: 172 GTVKEIPTRDQIDVPVNEVLIVELYSK 198 >UniRef50_D1R5K6 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R5K6_9CHLA Length = 229 Score = 199 bits (506), Expect = 6e-50, Method: Composition-based stats. Identities = 83/200 (41%), Positives = 119/200 (59%), Gaps = 6/200 (3%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 MARY G K +++RR G ++F R + PG HGAR+ + SDYGVQL EKQK Sbjct: 24 MARYTGKKNRIARRFGANVFG----RLRNPLLHKPNPPGMHGARRRKKSDYGVQLEEKQK 79 Query: 61 VRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119 ++ IYG + E Q NYYK+AARL+ NT + L +LE RLD VV+R+ FG+T A+QLVS Sbjct: 80 LKAIYGMLSEGQLINYYKKAARLEANTAQVLAQMLECRLDIVVHRLKFGSTIFAAQQLVS 139 Query: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179 H I+V+G+ V+ S+QV P V+S+REK++ ++ A + + R P +L +D Sbjct: 140 HGHILVDGKKVDRRSFQVRPGMVISVREKSRGIKAIQEA-QDSSMRSVPEYLSIDKENFS 198 Query: 180 GTFKRKPERSDLSADINEHL 199 G P + I +L Sbjct: 199 GQLLEYPSYELMPWPIPINL 218 >UniRef50_A6TSI5 30S ribosomal protein S4 B n=42 Tax=Clostridiales RepID=RS4B_ALKMQ Length = 199 Score = 198 bits (504), Expect = 8e-50, Method: Composition-based stats. Identities = 76/206 (36%), Positives = 113/206 (54%), Gaps = 9/206 (4%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 MAR P+ K RR G ++ +++A K +LS YG+QL EKQ+ Sbjct: 1 MARMRQPRFKTCRRLGINVCGHPKA--------MKRADNGQVRDKRKLSSYGIQLLEKQR 52 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 +R Y V+E+QF+ Y K A + TG +L+ LE RLDN+VYR GFG++ +ARQ+V H Sbjct: 53 LRAYYEVMEKQFKIYVKAAIKDSETTGNSLIKKLECRLDNLVYRTGFGSSIRQARQMVVH 112 Query: 121 KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEG 180 I+VNG+ V+ S+ VS D +S+REK++K P ++ + G Sbjct: 113 GHILVNGKKVDRPSFAVSVGDDISLREKSRKNKIFIDNFLRNVDFSYP-YIAKNEAGFSG 171 Query: 181 TFKRKPERSDLSADINEHLIVELYSK 206 R PER + ++N+HL+VE YSK Sbjct: 172 QLIRMPERHEAPIEVNDHLVVEFYSK 197 >UniRef50_A5KQD5 Putative uncharacterized protein n=3 Tax=Ruminococcus RepID=A5KQD5_9FIRM Length = 181 Score = 197 bits (500), Expect = 2e-49, Method: Composition-based stats. Identities = 84/172 (48%), Positives = 114/172 (66%) Query: 35 EQAPGQHGARKPRLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALL 94 +++ Q ++S+YG+QLREKQK + IYGVLE+ FRNYY +A +++G TGENL+ +L Sbjct: 10 KKSNRQLKRANRKMSEYGLQLREKQKAKFIYGVLEKPFRNYYAKAKQMEGMTGENLMRIL 69 Query: 95 EGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSR 154 E RLDNV++RMG TR EARQ+V HK ++VNG+ VNI SY V D + I+E K R Sbjct: 70 ESRLDNVIFRMGLARTRKEARQIVDHKHVLVNGKQVNIPSYLVKAGDTIEIKENKKGSQR 129 Query: 155 VKAALELAEQREKPTWLEVDAGKMEGTFKRKPERSDLSADINEHLIVELYSK 206 K LE P WL+VDA ++G+ K P R + ++E LIVELYSK Sbjct: 130 YKDILEATGSNMVPEWLDVDAENLKGSVKELPAREAIDVPVDEMLIVELYSK 181 >UniRef50_O22020 30S ribosomal protein S4, chloroplastic n=1 Tax=Cyanidioschyzon merolae RepID=RR4_CYAME Length = 190 Score = 195 bits (497), Expect = 6e-49, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 108/206 (52%), Gaps = 19/206 (9%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 M+RYLGP++++ RR G + K PG+H + +LS+Y L+ +QK Sbjct: 1 MSRYLGPRVRIIRRLGILPAFTNKSP-----NKRTGVPGEHAHKTRKLSEYAGVLQGEQK 55 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 ++ YG+ Q Y+++A + + +TG LL +LE RLD+VVYR GF T ARQLV+H Sbjct: 56 LQYYYGITNNQLARYFRQAKKSRASTGIELLKMLETRLDHVVYRAGFAPTLPAARQLVNH 115 Query: 121 KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEG 180 + VNG V IAS+ N ++ ++ K+ + + P +L+V Sbjct: 116 GHVKVNGNQVTIASFACQVNHIIEVKAKSPSSA------------QLPPYLQV--ENQFV 161 Query: 181 TFKRKPERSDLSADINEHLIVELYSK 206 + E+ L+ +NE L+VE Y++ Sbjct: 162 KMIQPVEKDWLAFRVNELLVVEYYTR 187 >UniRef50_A5CCV1 30S ribosomal protein S4 n=58 Tax=Bacteria RepID=RS4_ORITB Length = 207 Score = 195 bits (496), Expect = 8e-49, Method: Composition-based stats. Identities = 84/211 (39%), Positives = 113/211 (53%), Gaps = 11/211 (5%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKP--RLSDYGVQLREK 58 M + + K K+SRR GT ++ D PGQ G + SDY L K Sbjct: 1 MTKVIKSKYKVSRRLGTSVWGHEK----DAINNKNYKPGQQGNSSSISKPSDYSKHLIAK 56 Query: 59 QKVRRIYG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQL 117 Q+++ YG + E+QFRN +K A + GNT ENL+ LLE RLD VVYR+ T ARQL Sbjct: 57 QRLKSHYGRISEKQFRNTFKIARKKSGNTAENLVGLLERRLDAVVYRLNIAPTIFAARQL 116 Query: 118 VSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGK 177 VSHK I VNG+ +NIASY+V D + + E+AK+ V A+ + R P +L D K Sbjct: 117 VSHKHIKVNGKKINIASYRVKAGDSIELSEQAKQIPIVIGAISK-KARRIPEYLAFDDEK 175 Query: 178 MEGTFKRKPER-SDLSADINEH--LIVELYS 205 G F R P S++ + L+VE YS Sbjct: 176 FIGNFIRMPSSISEVPYPFDPQINLVVEFYS 206 >UniRef50_C6UNA0 30S ribosomal subunit protein S4 n=1 Tax=Candidatus Hodgkinia cicadicola Dsem RepID=C6UNA0_HODCD Length = 207 Score = 194 bits (493), Expect = 2e-48, Method: Composition-based stats. Identities = 67/209 (32%), Positives = 104/209 (49%), Gaps = 9/209 (4%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR-KPRLSDYGVQLREKQ 59 M R L PK K RR G L+ S + ++ APGQHG + + +S+Y ++L KQ Sbjct: 1 MNRRLRPKFKFDRRVGESLWGVSR----SSVNRVPTAPGQHGYKTRSSVSEYAIRLTAKQ 56 Query: 60 KVRRIY-GVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 K++ Y + E + YK A + +G+ NL+ +LE RLD +VYR A+ ARQL+ Sbjct: 57 KLKFYYSNLTESKLVKAYKTALKYRGDVAHNLVRVLERRLDVLVYRARLAASFRAARQLI 116 Query: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 SH ++VN V+I S++ P DV + + VK A+ L +R P + D + Sbjct: 117 SHGHVLVNNSKVDICSFECKPGDVFRVAPCFVNAAVVKEAV-LGCERSVPNHISCDFKHL 175 Query: 179 EGTFKRKPERSD--LSADINEHLIVELYS 205 + T + P + L+ E YS Sbjct: 176 KFTLVKPPAACGALFPVAMCPELVAEYYS 204 >UniRef50_D1N636 Ribosomal protein S4 n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N636_9BACT Length = 200 Score = 193 bits (491), Expect = 3e-48, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 100/207 (48%), Gaps = 8/207 (3%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGA-RKPRLSDYGVQLREKQ 59 M K K RR G ++ ++ K A G HG R+ +LS YG L EKQ Sbjct: 1 MPTASRAKHKFCRRIGQCIWGDPKCPSV----KRPYAAGPHGKGRRVKLSTYGELLMEKQ 56 Query: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119 K++ Y + E+Q + Y +A G T E L LE RLD +V+R GF T A+Q V+ Sbjct: 57 KLKNYYAISEKQLQIAYAKAKAGTGQTHEKLFRSLEQRLDAMVFRAGFAPTIFAAKQFVN 116 Query: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179 H I+V+G+ ++ +S V V+SI A K + + P ++EVD ++ Sbjct: 117 HGHILVDGKRIDRSSCLVKEGQVISI--DAAKSPAIAE-IAKKGNSTIPAYMEVDLENLK 173 Query: 180 GTFKRKPERSDLSADINEHLIVELYSK 206 T R P+ ++ + ++E Y++ Sbjct: 174 ATLTRAPQLEEIPVSVKIMSVIEYYAR 200 >UniRef50_B2S2Q4 30S ribosomal protein S4 n=4 Tax=Treponema RepID=RS4_TREPS Length = 204 Score = 192 bits (487), Expect = 8e-48, Method: Composition-based stats. Identities = 74/199 (37%), Positives = 116/199 (58%), Gaps = 1/199 (0%) Query: 8 KLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRIYGV 67 + K+ RR G ++F + K ++ ++S YG QL+EKQK R YG+ Sbjct: 7 RGKIVRRLGINIFGNPKYTRLLGKKPAPPGKEHGVKQRAKVSVYGEQLKEKQKFRFAYGM 66 Query: 68 LERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNG 127 ERQFRN + +A R+KG TG N+L+L+E RLDN V+RMGF +R +ARQ+VSH+ ++NG Sbjct: 67 SERQFRNLFAQAHRMKGVTGNNMLSLMERRLDNTVFRMGFAISRVQARQMVSHRYFLING 126 Query: 128 RVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFKRKPE 187 + NI S ++S +DV++ + + S ++ L L++ + +WL VD ++ T P Sbjct: 127 KTANIPSMRISAHDVITTKNRKGIHSIIRHNLTLSQGQR-GSWLNVDEEQLSATVSELPR 185 Query: 188 RSDLSADINEHLIVELYSK 206 D+ N IVE YS+ Sbjct: 186 AQDIHPVGNIQHIVEYYSR 204 >UniRef50_A5CRZ7 30S ribosomal protein S4 n=75 Tax=Actinobacteria (class) RepID=RS4_CLAM3 Length = 209 Score = 191 bits (486), Expect = 1e-47, Method: Composition-based stats. Identities = 73/206 (35%), Positives = 116/206 (56%), Gaps = 8/206 (3%) Query: 4 YLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRL-SDYGVQLREKQKVR 62 K +LSR G L K+ K APG+HG K + SDY V+LREKQ++R Sbjct: 6 RTRSKTRLSRALGIPLTPKAAKY----LEKRPYAPGEHGRSKRKQDSDYAVRLREKQRLR 61 Query: 63 RIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKA 122 YG+ E Q + ++EA R +G TGENL+ +LE RLD +V R G T A+ARQLV H+ Sbjct: 62 AQYGIREAQLKIAFQEARRTQGLTGENLVEILEQRLDALVVRSGLARTTAQARQLVVHRH 121 Query: 123 IMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQR---EKPTWLEVDAGKME 179 IMV+G++V+ S++V ++ ++ +++ + A + P++LEV+ K++ Sbjct: 122 IMVDGKIVDRPSFRVKAGQMIHVKPRSEGTEPFQVAAAGGHADVLPKLPSYLEVELDKLQ 181 Query: 180 GTFKRKPERSDLSADINEHLIVELYS 205 R P+R+++ L+VE Y+ Sbjct: 182 ARLVRLPKRAEVPVTCEVQLVVEYYA 207 >UniRef50_C7LKJ2 30S ribosomal subunit protein S4 n=1 Tax=Candidatus Sulcia muelleri SMDSEM RepID=C7LKJ2_SULMS Length = 223 Score = 183 bits (465), Expect = 3e-45, Method: Composition-based stats. Identities = 90/224 (40%), Positives = 123/224 (54%), Gaps = 19/224 (8%) Query: 1 MARYLGPKLKLSRR--EGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRL---------- 48 MA+Y+GPK K++R+ G ++LK + K Q + ++ Sbjct: 1 MAKYIGPKNKIARKFELGESIYLKEKNNFENKKTFDGQYVNPRSGKNRKIIKKLNKKLNK 60 Query: 49 ------SDYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVV 102 S Y +QL EKQKV+ YG+LE+QFR +++A++ KG GE LL L E RLDN+V Sbjct: 61 KLNKKKSFYFIQLLEKQKVKYTYGILEKQFRKMFEKASKKKGRKGEILLQLCESRLDNIV 120 Query: 103 YRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELA 162 YR+ TR EARQLVSH+ I VNG++VNI SY + P D +S+ EK KKQ + + Sbjct: 121 YRLKLSHTRPEARQLVSHRHITVNGKIVNIPSYNLKPGDKISLIEKYKKQKAIL-LEKKR 179 Query: 163 EQREKPTWLEVDAGKMEGTFKRKPERSDLSADINEHLIVELYSK 206 + TWL D G K P R + INE+LIVELY K Sbjct: 180 LVGKVTTWLSWDNENFIGILKSIPRREQIPEMINENLIVELYYK 223 >UniRef50_Q2GDI3 30S ribosomal protein S4 n=3 Tax=Anaplasmataceae RepID=RS4_NEOSM Length = 205 Score = 180 bits (456), Expect = 4e-44, Method: Composition-based stats. Identities = 73/208 (35%), Positives = 109/208 (52%), Gaps = 9/208 (4%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARK-PRLSDYGVQLREKQ 59 M + K ++SR+ L+ D K APGQHG ++SD+ Q ++ Sbjct: 1 MTTTIRRKFRVSRQMKASLWGSQK----DPVHKRNYAPGQHGRAPVKKISDFYKQNAAQR 56 Query: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119 R Y + ++QF N + +A R KGNT +NL++LLE R+ +V+YR G T ARQL+S Sbjct: 57 AFRTYYVIGKKQFANVFSKAYRGKGNTNDNLISLLESRVSSVLYRSGMVPTIFAARQLIS 116 Query: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179 HK + VNG +VNI S+ + DVV IR++A V AAL + P +LEVD K Sbjct: 117 HKHVTVNGEIVNICSFTLKEGDVVQIRDRASNIPCVVAALNSNSES--PHYLEVDREKRS 174 Query: 180 GTFKRKPERSDLSADI--NEHLIVELYS 205 P+ D+ + +L+ E +S Sbjct: 175 VKLLVLPKFEDVPYPVVMEPNLVTEYFS 202 >UniRef50_Q06J34 30S ribosomal protein S4, chloroplastic n=1 Tax=Bigelowiella natans RepID=RR4_BIGNA Length = 194 Score = 180 bits (456), Expect = 4e-44, Method: Composition-based stats. Identities = 72/205 (35%), Positives = 99/205 (48%), Gaps = 13/205 (6%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 MARY G ++K+ RR G S P + +LS YG L+EKQK Sbjct: 1 MARYRGSRVKVIRRLGLLPGFTSKS---------SNKPQNNN---KQLSQYGFHLQEKQK 48 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 +R YG+ E + Y K A R +GN+G+ LL LLE RLD ++YR GF T A ARQL+SH Sbjct: 49 LRYNYGISEHELIKYVKSARRKRGNSGDKLLQLLEMRLDTLLYRTGFVPTVASARQLISH 108 Query: 121 KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEG 180 I VNG+ V+I + S +D + I ++ K K + L + Sbjct: 109 GHINVNGKKVDIPGFNCSISDKIVINKEILKSLNDKNN-SFSTLNCSHLVLNELNNDLTI 167 Query: 181 TFKRKPERSDLSADINEHLIVELYS 205 T P+ L IN L++E YS Sbjct: 168 TVTNLPDIQVLGYSINILLVLEYYS 192 >UniRef50_UPI00016C3E34 30S ribosomal protein S4 n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3E34 Length = 196 Score = 180 bits (456), Expect = 4e-44, Method: Composition-based stats. Identities = 80/182 (43%), Positives = 109/182 (59%), Gaps = 6/182 (3%) Query: 30 TKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGEN 89 K + PG HG R+ + S+YG++LREKQK++R YGVLE QFR YY A + GNTGE Sbjct: 16 PIDKQKPPPGMHGLRRSKTSEYGIRLREKQKLKRFYGVLEAQFRRYYGLATKAVGNTGEQ 75 Query: 90 LLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKA 149 LL++LE RLDNVV+R+GF R ARQ+VSH I+VNG +IAS V P DV+ ++ + Sbjct: 76 LLSILERRLDNVVHRLGFAVNRTSARQMVSHGHILVNGVKCDIASMLVKPGDVIKVKTRD 135 Query: 150 KKQSRVKAALELAEQREKPTWLEVDA--GKMEGTFKRKPERSDLSA---DINEHLIVELY 204 + L R P +LE+ + EG R P R D+ DI E LI+E+ Sbjct: 136 SSLKMARDTLAKGTVR-IPDFLELTGTQDQPEGRMNRTPTRQDVDERITDIREQLIIEIA 194 Query: 205 SK 206 ++ Sbjct: 195 TR 196 >UniRef50_Q6MIP0 30S ribosomal protein S4 B n=1 Tax=Bdellovibrio bacteriovorus RepID=RS4B_BDEBA Length = 208 Score = 178 bits (451), Expect = 1e-43, Method: Composition-based stats. Identities = 72/202 (35%), Positives = 113/202 (55%), Gaps = 7/202 (3%) Query: 7 PKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRIYG 66 P+ K RR T+L A++ + PGQHG ++ + S++ +QL EKQK+R YG Sbjct: 8 PRFKRQRRLLTELPGMGKAGALE---RRPYPPGQHGLQRRKYSEFALQLEEKQKLRFHYG 64 Query: 67 VLERQFRNYYKEAARLKG-NTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMV 125 + E QFR +A + K N E L+ LLE RLDNVV+R+GF ++ ARQLVSH ++V Sbjct: 65 LREEQFRRLINKAKKSKATNWVEALVNLLEKRLDNVVFRLGFASSIPAARQLVSHGKVLV 124 Query: 126 NGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWL--EVDAGKMEGTFK 183 NG+ VNI S + D ++++++A + V A + A + P+++ E AGK +G Sbjct: 125 NGKKVNIGSQIIKVGDKITLKDEAYQNQ-VYMAAKQAPRLPLPSFMAKEDVAGKEQGRLT 183 Query: 184 RKPERSDLSADINEHLIVELYS 205 +P + L++ YS Sbjct: 184 DEPNLEAVPFAFEPGLVIGYYS 205 >UniRef50_Q8WL66 Ribosomal protein small subunit 4 (Fragment) n=12 Tax=Embryophyta RepID=Q8WL66_9TRAC Length = 177 Score = 175 bits (444), Expect = 9e-43, Method: Composition-based stats. Identities = 57/157 (36%), Positives = 94/157 (59%), Gaps = 5/157 (3%) Query: 53 VQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRA 112 ++L KQ++R YG+ ERQ Y + A + +G+TG+ L LLE RLDNV++ +G +T Sbjct: 21 LRLEAKQRLRFNYGLTERQLLKYVRIARKTRGSTGQVPLQLLEMRLDNVIFHLGMASTIP 80 Query: 113 EARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLE 172 ARQLV+H+ I+VN R+V+I SY+ P D++++R ++ + ++ E + P L Sbjct: 81 AARQLVNHRHILVNNRIVDIPSYRCKPKDIITLRNQSTFCNALRG--ESPGGGKTPDHLT 138 Query: 173 V---DAGKMEGTFKRKPERSDLSADINEHLIVELYSK 206 V + + G R R ++ +INE L+VE YS+ Sbjct: 139 VSLSEGNRPTGVVNRIANRESVNLNINELLVVEYYSR 175 >UniRef50_P58134 Plastid 30S ribosomal protein S4 n=1 Tax=Euglena longa RepID=RR4_ASTLO Length = 206 Score = 174 bits (441), Expect = 2e-42, Method: Composition-based stats. Identities = 72/207 (34%), Positives = 117/207 (56%), Gaps = 4/207 (1%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 M RYLGP +K+ R+ G+ + + + + S Y ++L+EKQK Sbjct: 1 MVRYLGPHVKVIRKLGSLRAFTKKK---IKRYFKLDTKKRKLSFNKKTSKYKIRLKEKQK 57 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 +R + + E+Q NY K+A +LKG++GENLL LE RLDN+VYR+G T +RQL++H Sbjct: 58 LRFNFAISEKQLFNYVKKAIKLKGSSGENLLVALEMRLDNIVYRLGLAPTIISSRQLINH 117 Query: 121 KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQR-EKPTWLEVDAGKME 179 I V+G+VVNI S++ P + + I++ + ++ +EL ++ P+ L + K+E Sbjct: 118 GHIYVDGKVVNIPSFKCKPTNNIKIKDNLVSKRIIEKNIELLDKYFRAPSHLYFNKKKLE 177 Query: 180 GTFKRKPERSDLSADINEHLIVELYSK 206 +R D+ INE LI+E YS+ Sbjct: 178 AKVINMVKREDIKLIINELLIIEFYSR 204 >UniRef50_B2X261 Ribosomal protein S4 (Fragment) n=1 Tax=Floydiella terrestris RepID=B2X261_9CHLO Length = 518 Score = 166 bits (422), Expect = 3e-40, Method: Composition-based stats. Identities = 69/199 (34%), Positives = 101/199 (50%), Gaps = 20/199 (10%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKC-------KIEQAPGQHGA-----RKPRL 48 M+RYLGP+L+++RR GT + + + PGQHG +KP Sbjct: 29 MSRYLGPRLRITRRLGTLIGFTRKKPTMKPLYPENPFGLRKVIPPGQHGRAKLFKKKPYE 88 Query: 49 S---DYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRM 105 S D+ ++L+ KQ++R YG+ E+Q NY + A + KG+TG LL LLE RLDN+V+R+ Sbjct: 89 SNEYDFLIRLKFKQRLRYYYGITEKQLFNYVELARKSKGSTGLVLLRLLEMRLDNIVFRL 148 Query: 106 GFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAAL-----E 160 T A ARQL+SH I+VN + V I S Q P D+++ K + V L E Sbjct: 149 HMAPTIAAARQLISHGHILVNKKKVTIPSAQCKPKDLITAAPKIRSMELVSRFLKEFDME 208 Query: 161 LAEQREKPTWLEVDAGKME 179 A L+ + Sbjct: 209 KARFNRIVNILQFGKKGLT 227 >UniRef50_Q06SJ3 30S ribosomal protein S4, chloroplastic n=2 Tax=Viridiplantae RepID=RR4_STIHE Length = 2922 Score = 166 bits (421), Expect = 4e-40, Method: Composition-based stats. Identities = 66/182 (36%), Positives = 99/182 (54%), Gaps = 15/182 (8%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKC-------KIEQAPGQHGA-----RKPRL 48 M+RYLGP+L+++RR G L A + PG+HG +KP Sbjct: 1 MSRYLGPRLRITRRLGHLSGLTRKKPAFKPLNPVNPFGPRKIIPPGEHGRNKSFKKKPYE 60 Query: 49 S---DYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRM 105 S DY ++L+ KQ++R YG+ ERQ Y ++A ++KG+TG LL LLE RLDN+V+R+ Sbjct: 61 SCEYDYLIRLKLKQRLRFHYGLTERQLVRYVQQAKKIKGSTGRVLLRLLEMRLDNIVFRL 120 Query: 106 GFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQR 165 T ARQL+SH I++N + V I SYQ P D++++ K V L ++ Sbjct: 121 HMAPTIKAARQLISHGHILINKKKVTIPSYQCEPKDIITVAPKIISMELVSRFLSEFDRE 180 Query: 166 EK 167 + Sbjct: 181 KS 182 >UniRef50_C6B8C6 RNA-binding S4 domain protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM1325 RepID=C6B8C6_RHILS Length = 146 Score = 163 bits (414), Expect = 3e-39, Method: Composition-based stats. Identities = 60/141 (42%), Positives = 86/141 (60%), Gaps = 3/141 (2%) Query: 68 LERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNG 127 QFR + EA RL+G+T ENL+ALLE RLD +VYR F T ARQ ++H ++VNG Sbjct: 7 TRFQFRRIFNEANRLRGDTSENLIALLESRLDAIVYRAKFAPTPFAARQFINHGHVIVNG 66 Query: 128 RVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFKRKPE 187 VNI+SY+ DV+ +R K+K+ + V ++ LAE R+ P ++ D KM TF R P Sbjct: 67 MRVNISSYRCKAGDVIEVRPKSKQLAVVLESVGLAE-RDVPDYIAADHNKMTATFSRVPA 125 Query: 188 RSDLSADI--NEHLIVELYSK 206 +D+ + L+VE YS+ Sbjct: 126 LADVPFAVIMEPQLVVEFYSR 146 >UniRef50_Q85XL2 Small ribosomal protein 4 (Fragment) n=2 Tax=Embryophyta RepID=Q85XL2_9BRYO Length = 146 Score = 163 bits (413), Expect = 3e-39, Method: Composition-based stats. Identities = 53/144 (36%), Positives = 82/144 (56%) Query: 63 RIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKA 122 YG+ ERQ NY + A + KG+TGE LL LLE RLDNV++R+G T ARQ V+H+ Sbjct: 1 FHYGITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQXVNHRH 60 Query: 123 IMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTF 182 I+VN R+V+I SY+ P D ++I++ + ++ ++ P L + + +G Sbjct: 61 ILVNDRIVDIPSYRXKPQDFITIKDPQXSHAIXSKNIDFHQKYXIPNHLTYNPLENKGLV 120 Query: 183 KRKPERSDLSADINEHLIVELYSK 206 + +R + INE L E YS+ Sbjct: 121 NQILBRESIGLKINELLXXEYYSR 144 >UniRef50_P48270 30S ribosomal protein S4, chloroplastic n=6 Tax=Chlorophyceae RepID=RR4_CHLRE Length = 257 Score = 161 bits (409), Expect = 1e-38, Method: Composition-based stats. Identities = 66/174 (37%), Positives = 91/174 (52%), Gaps = 14/174 (8%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQ------APGQHGARK--------P 46 M+RYLGP+L++ RR G PGQHG K Sbjct: 1 MSRYLGPRLRVIRRIGKLRGFTRKKPFRRVFKGFGGFKGKVIPPGQHGLTKLLKTRPYDS 60 Query: 47 RLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMG 106 SDY ++L+ KQ++R YG+ ERQ NY ++A ++K +TG+ LL LE RLDN+V+R+ Sbjct: 61 SESDYLIRLKVKQRLRFNYGITERQLVNYVRKAKKIKESTGQVLLQFLEMRLDNIVFRLN 120 Query: 107 FGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALE 160 T ARQL+SH I VN + VNI SY P DV+S+ K + V L+ Sbjct: 121 MAPTIPAARQLISHGHIRVNNKKVNIPSYMCKPKDVISVAMKQRSLQLVNKNLQ 174 >UniRef50_Q5C773 SJCHGC09636 protein (Fragment) n=1 Tax=Schistosoma japonicum RepID=Q5C773_SCHJA Length = 139 Score = 161 bits (407), Expect = 2e-38, Method: Composition-based stats. Identities = 71/144 (49%), Positives = 90/144 (62%), Gaps = 5/144 (3%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 MARY GP K SRR TDL + PGQHG + + +Y QL+EKQK Sbjct: 1 MARYTGPITKKSRRLKTDLVGGDKNFEM-----RPFPPGQHGRGRVQEKEYLTQLQEKQK 55 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 R YGV+E+QF YYKEAAR +G TGENLL +LE RLD+VVYR G TR ARQ+V+H Sbjct: 56 ARFTYGVMEKQFVRYYKEAARRQGKTGENLLVILESRLDSVVYRAGLARTRRGARQMVTH 115 Query: 121 KAIMVNGRVVNIASYQVSPNDVVS 144 VNG+ V++ SY+V D+++ Sbjct: 116 GHFEVNGKRVDVPSYRVEQYDIIT 139 >UniRef50_O21263 Ribosomal protein S4, mitochondrial n=1 Tax=Reclinomonas americana RepID=RT04_RECAM Length = 249 Score = 158 bits (399), Expect = 1e-37, Method: Composition-based stats. Identities = 69/248 (27%), Positives = 118/248 (47%), Gaps = 44/248 (17%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAID-TKCKIEQAPGQHGARKP------------- 46 M + L K K+ + G +++ K + TK K + PG+H + Sbjct: 1 MTKRLSSKQKVYTQTGINIWGKGPFLWKNNTKDKWKNTPGEHKKKHKLLERYSPMIRGDS 60 Query: 47 ------------------RLSDY----GVQLREKQKVRRIY-GVLERQFRNYYKEAARLK 83 ++S Y QL+EKQK+R+ Y V E+QF NYY +A K Sbjct: 61 INEMNQLGYLIPKSKNEVKISYYEPRYASQLKEKQKLRKFYANVTEKQFYNYYVKAKSFK 120 Query: 84 GNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVV 143 G G+NL+ +LE RLD ++YR GF + +AR LV+HK ++VN ++ NI+SY V D++ Sbjct: 121 GKIGDNLIKMLERRLDIIIYRAGFVNSIYQARLLVNHKHVLVNNKIQNISSYLVQNGDMI 180 Query: 144 SIREKAKKQSRVKAALELAEQRE-----KPTWLEVDAGKMEGTFKRKPERSDL--SADIN 196 SI+ + R + ++ ++ +LEVD M + PE +++ ++ Sbjct: 181 SIKPEIVNLLRNQYNWDILQKSNGSFLKYLPYLEVDYKTMSCIYLYTPEMNEIYFPFQLD 240 Query: 197 EHLIVELY 204 + ++ Y Sbjct: 241 MNKVIRYY 248 >UniRef50_B2X1Z7 Ribosomal protein S4 n=1 Tax=Oedogonium cardiacum RepID=B2X1Z7_OEDCA Length = 2801 Score = 156 bits (396), Expect = 3e-37, Method: Composition-based stats. Identities = 63/182 (34%), Positives = 97/182 (53%), Gaps = 15/182 (8%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKC-------KIEQAPGQHGA-----RKPRL 48 M+RYLGP+L++ RR G + L + + PGQHG +KP Sbjct: 1 MSRYLGPRLRIVRRLGYLVGLTRKKPSTRLLNPDARRGIRKVLPPGQHGRSKSFKKKPYE 60 Query: 49 S---DYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRM 105 S D+ ++L+ KQ++R YG+ E+Q NY ++A ++KG+TG LL LLE RLDN V+R+ Sbjct: 61 SNEYDFLIRLKLKQRIRYHYGITEKQLVNYVRQARKIKGSTGRVLLRLLEMRLDNTVFRL 120 Query: 106 GFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQR 165 T ARQL++H I VN + V+I SY P D+++ K + + L + Sbjct: 121 HMAPTIRAARQLITHGHIYVNNKKVSIPSYSCKPKDIITPAPKTRSIQLLNNFLTDLDLE 180 Query: 166 EK 167 + Sbjct: 181 KS 182 >UniRef50_Q00NZ9 Rps4 (Fragment) n=5 Tax=Embryophyta RepID=Q00NZ9_PASCC Length = 171 Score = 151 bits (383), Expect = 9e-36, Method: Composition-based stats. Identities = 59/167 (35%), Positives = 98/167 (58%), Gaps = 14/167 (8%) Query: 16 GTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRIYGVLERQFRNY 75 GT L S ++ + +K G R S Y +L+EKQ++R YG+ ERQ Y Sbjct: 1 GTLPGLISNLKDLPSKNPRV---GSAFWGSGRKSQYCRRLQEKQRLRFHYGLTERQLLKY 57 Query: 76 YKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASY 135 + A + KG TG+ LL LLE RLDN+++R+G +T +ARQLV+H+ I+VN R+V+I SY Sbjct: 58 VRIATKAKGLTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNDRMVDIPSY 117 Query: 136 QVSPNDVVSIREKAKKQSRVKAAL-----------ELAEQREKPTWL 171 + P D+++++++ K + +K +L + + +++ PT L Sbjct: 118 RCKPRDLITVKDEQKSKDMIKKSLDSLDMIKKSLDDSSPRKKLPTHL 164 >UniRef50_C1IXJ0 Ribosomal protein S4 n=1 Tax=Picea sitchensis RepID=C1IXJ0_PICSI Length = 201 Score = 151 bits (381), Expect = 2e-35, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 99/206 (48%), Gaps = 7/206 (3%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 M+RY GP+LK+ RR T + + +K + + + ++S Y ++ EKQK Sbjct: 1 MSRYRGPRLKIIRRLKT-------LPGLTSKRPKNRKDSMNRSSSRKISQYRIRPEEKQK 53 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 +R YG+ ERQ Y + A R KG+TG+ +H Sbjct: 54 LRFHYGLTERQLLKYVRIARRAKGSTGQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNH 113 Query: 121 KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEG 180 I VN +V+I SY P DV++IR++ + ++ ++ L+L ++ + P L + + +G Sbjct: 114 VHIRVNDHMVDIPSYPCKPQDVITIRDQQRLRAIIRKNLDLFQRDKLPNHLTFHSLQYKG 173 Query: 181 TFKRKPERSDLSADINEHLIVELYSK 206 + + +S INE L+VE YS+ Sbjct: 174 FINQIIDSKWISLKINELLVVEYYSR 199 >UniRef50_D0PPV5 Small ribosomal protein 4 (Fragment) n=1 Tax=Austrotaxus spicata RepID=D0PPV5_9CONI Length = 199 Score = 147 bits (372), Expect = 2e-34, Method: Composition-based stats. Identities = 61/202 (30%), Positives = 104/202 (51%), Gaps = 10/202 (4%) Query: 8 KLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRIYGV 67 +LK+ L L I + R P+ S Y ++L++KQKV Y Sbjct: 1 RLKIINCLKILLGLSKKSPNIKKPRVKKH------YRAPKPSKYPIRLKKKQKVGFHYKF 54 Query: 68 LERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNG 127 ERQ A R +G E LL LLE LDN+++++G +T AR+L +H+ I++N Sbjct: 55 TERQLLQCSHIARRSEGYIVEVLLQLLEINLDNIIFQLGMASTIPGARKLFNHRDILLNN 114 Query: 128 RVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQRE--KPTWLEVDAGKMEGT--FK 183 R+V+I SY P D++SI+++ + ++ + ++LA++ + P L + K + K Sbjct: 115 RIVDIPSYHCKPQDLISIKDQQRSRNIINKNIDLAKRDKMRVPNLLNLKKEKSQYIELVK 174 Query: 184 RKPERSDLSADINEHLIVELYS 205 + + +S INE L++E YS Sbjct: 175 KIIDSKWISLKINELLVIEYYS 196 >UniRef50_Q2WGC2 Ribosomal protein S4 (Fragment) n=2 Tax=Selaginella RepID=Q2WGC2_SELUN Length = 196 Score = 143 bits (362), Expect = 2e-33, Method: Composition-based stats. Identities = 57/207 (27%), Positives = 96/207 (46%), Gaps = 16/207 (7%) Query: 2 ARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKP--RLSDYGVQLREKQ 59 +R+ GP+ K+ RR G A + PG P + Y ++ EKQ Sbjct: 2 SRHRGPRAKIVRRPGRSPGPTRKRPA-------GRKPGYANQSTPTTKAPQYRIRSEEKQ 54 Query: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119 + R +G E+Q Y + A R KG+TG+ L E R DN++ R+G +T ARQ V+ Sbjct: 55 RSRLHHGPTEQQSLRYVRIAKRAKGSTGQVSLQSPETRSDNIIPRLGAASTTPGARQSVT 114 Query: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKME 179 H+ N R +++ SY+ P D ++ R+ ++ +S ++ + EQ + Sbjct: 115 HERAPANDRAISVPSYRRKPADAIAARQ-SRCRSVGNSSNRIGEQDHSTLYPHA------ 167 Query: 180 GTFKRKPERSDLSADINEHLIVELYSK 206 G R +R + + NE L VE + + Sbjct: 168 GLAVRPVDRKWIDPNTNESLAVEYHPR 194 >UniRef50_Q0P3J0 Mitochondrion, complete genome n=1 Tax=Ostreococcus tauri RepID=Q0P3J0_OSTTA Length = 209 Score = 139 bits (351), Expect = 5e-32, Method: Composition-based stats. Identities = 53/200 (26%), Positives = 94/200 (47%), Gaps = 10/200 (5%) Query: 8 KLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRIYGV 67 K K R+ G L+ R K + + +LS++ +QLR KQ V +YG Sbjct: 8 KGKPCRKFGAFLW---KTRTFTIKQEKAVSLANKKVNTKKLSNFALQLRAKQLVSALYGQ 64 Query: 68 LERQ-FRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVN 126 L+ Q F++ +++ + +G +LLE RLD+ + ++ F T ARQL++HK + +N Sbjct: 65 LKLQHFKHLLQQSQKYRGKLAHIFFSLLEKRLDSCLVQLKFAPTFLAARQLINHKKVCIN 124 Query: 127 GRVVNIASYQVSPNDVVSIREKAKKQ--SRVKAALELAEQREK----PTWLEVDAGKMEG 180 G ++ + P D VS + + + S V+ A L + ++ P EV+ +E Sbjct: 125 GNIITAPGVLLKPGDSVSFIPEIQTRVASNVQTACALHDSKKVLAYKPLHFEVNYKTLEA 184 Query: 181 TFKRKPERSDLSADINEHLI 200 F P++ I L+ Sbjct: 185 IFLFSPQQVHYPTRIEPELV 204 >UniRef50_P26866 Ribosomal protein S4, mitochondrial n=4 Tax=Streptophytina RepID=RT04_MARPO Length = 196 Score = 139 bits (350), Expect = 7e-32, Method: Composition-based stats. Identities = 52/196 (26%), Positives = 96/196 (48%), Gaps = 8/196 (4%) Query: 7 PKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRIYG 66 + K+ R+ +++ + K K + Q + + SD+ +QL+ +K+ YG Sbjct: 4 SRFKVCRQILENVWQTKK---LTLKQKFLISELQKQKKNKKQSDFSIQLQTIKKLSLFYG 60 Query: 67 VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVN 126 L + + + +LL +E RLD ++ R+ F +T +ARQL+SHK I VN Sbjct: 61 NLP--IKKMQRAKTHTYIDKKNSLLFNIEKRLDVILVRLNFCSTMFQARQLISHKNICVN 118 Query: 127 GRVVNIASYQVSPNDVVSIREKAKK--QSRVKAALELAE-QREKPTWLEVDAGKMEGTFK 183 + VNI +QVS D++SI+E + +S ++ + +R KP LEV+ ++ Sbjct: 119 YKKVNIPGFQVSNGDLISIQENSLDFFKSNIRKNFQTNRIRRMKPNHLEVNYKTLKAVVL 178 Query: 184 RKPERSDLSADINEHL 199 +P++ I+ L Sbjct: 179 YEPQQIQFPYKIDLDL 194 >UniRef50_Q2EEX1 Plastid 30S ribosomal protein S4 n=1 Tax=Helicosporidium sp. ex Simulium jonesi RepID=RR4_HELSJ Length = 173 Score = 138 bits (348), Expect = 1e-31, Method: Composition-based stats. Identities = 52/171 (30%), Positives = 86/171 (50%), Gaps = 6/171 (3%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 M RY GP+L++ RR G I +K P + R+ S YG++L KQ+ Sbjct: 1 MGRYRGPRLRIIRRLGDLPLFTKKKPHIASKRLPLGHPVRKIKRR--PSIYGLRLLAKQR 58 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 YG+ + Q +NY K+A +G+ +NL+ LLE RLD+ +YR G +T A ARQL++H Sbjct: 59 CCYSYGLRDYQLKNYIKKARNAQGDPIKNLIFLLESRLDSKIYRSGIVSTMAAARQLITH 118 Query: 121 KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWL 171 ++V+ + I SY + + ++ K +E + P ++ Sbjct: 119 GHVLVDNIKITIPSYSCNESQIL----DYKNTKLTSELIEKIKLSFNPIYV 165 >UniRef50_Q6VQL8 Rps4 n=1 Tax=Psammisia dolichopoda RepID=Q6VQL8_9ERIC Length = 142 Score = 136 bits (342), Expect = 6e-31, Method: Composition-based stats. Identities = 46/98 (46%), Positives = 72/98 (73%) Query: 50 DYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGA 109 Y ++L+EKQK+R YG+ ERQ Y + A + KG+TG+ LL LLE RLDN+++R+G + Sbjct: 45 QYHIRLQEKQKLRFHYGLTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMAS 104 Query: 110 TRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIRE 147 T ARQLV+H+ ++VNGR+++I SY+ P D+++ R+ Sbjct: 105 TIPGARQLVNHRHVLVNGRIIDIPSYRCKPRDIITARK 142 >UniRef50_Q05FK4 30S ribosomal protein S4 n=1 Tax=Candidatus Carsonella ruddii PV RepID=RS4_CARRP Length = 197 Score = 132 bits (332), Expect = 8e-30, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 88/157 (56%), Gaps = 2/157 (1%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 M + +K RREG +L S + ++ K + PG++G K ++SD+G+ LR KQK Sbjct: 1 MTKKKSKNIKFCRREGENLEFFSEKKYLE-KSRSNLTPGENGTEKGKVSDFGLILRTKQK 59 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 ++R Y + E++F+ Y + N + L+ LE RLDNV+YR F +R E+RQL+ H Sbjct: 60 IKRYYCIFEKEFKKIYFIIKKNFFNNID-LINFLERRLDNVIYRFNFSISRKESRQLIIH 118 Query: 121 KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKA 157 + VN I SY +SP DV++I +K + + Sbjct: 119 GNVFVNYFKNKIPSYLLSPGDVITINKKFLLKKYLYD 155 >UniRef50_C1KRH3 Ribosomal protein S4 n=1 Tax=Micromonas sp. RCC299 RepID=C1KRH3_9CHLO Length = 239 Score = 131 bits (331), Expect = 1e-29, Method: Composition-based stats. Identities = 55/238 (23%), Positives = 100/238 (42%), Gaps = 32/238 (13%) Query: 1 MARYLGP-KLKLSRREGTDLFLK-----SGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQ 54 M + P ++K+ R+ G L+ V +D + + RK + + + Q Sbjct: 1 MTKISSPFRMKVLRKIGVSLWPWRHMTLKQVEKLDKIVQKQSKQTSLLERKKKRTQFAYQ 60 Query: 55 LREKQKVRRIYGVLERQ-FRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAE 113 L+ KQ V+ +YG L F ++YK++ ++ G + N + LE RLD ++YR F + E Sbjct: 61 LQAKQIVKALYGNLNTSYFISFYKKSLKMIGKSNINFFSQLERRLDCILYRANFVTSFQE 120 Query: 114 ARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRV------------------ 155 ARQ++SH+ + VN +N Y V P D++S K + Sbjct: 121 ARQVISHQKVCVNTVKINKPGYIVKPGDIISFVSDIKDTQALSITNFLNRPATIKALNDK 180 Query: 156 -------KAALELAEQREKPTWLEVDAGKMEGTFKRKPERSDLSADINEHLIVELYSK 206 AL + KP LE++ + + P++ + I +++K Sbjct: 181 GSLQSKNNRALSPTKVFYKPVHLEINYHTLTIVYLYTPQQLYYPVQLPLQHIARVFNK 238 >UniRef50_Q9G884 Ribosomal protein S4 n=1 Tax=Malawimonas jakobiformis RepID=Q9G884_9EUKA Length = 225 Score = 126 bits (318), Expect = 4e-28, Method: Composition-based stats. Identities = 50/218 (22%), Positives = 103/218 (47%), Gaps = 30/218 (13%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 M + K ++ ++ G DL+ K ++ K GQHG K + + ++ K Sbjct: 1 MTKRFKQKYRICKQIGEDLWGK-----LNKKINYNVRSGQHGKIKKKRKEIAFIYKDNNK 55 Query: 61 --------------VRRIY-GVLERQFRNYYKEAARLKGNTGEN-----LLALLEGRLDN 100 +R+ Y + ++QF N +K+ L N N L+ LLE RLD Sbjct: 56 KKINTVNKTQFIYKLRKFYSNISKKQFDNLFKKGNLLNANNKYNTNSKYLINLLERRLDT 115 Query: 101 VVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALE 160 +++R+ + ++ ARQL++H I++NG +VN++S+ V+ D + +++ ++K K ++ Sbjct: 116 ILFRINWASSFFNARQLINHGHILINGNIVNVSSHLVNIGDKIEVKKDSQKL-LKKNLID 174 Query: 161 LAEQREK----PTWLEVDAGKMEGTFKRKPERSDLSAD 194 + ++ P+++EV+ + P S + Sbjct: 175 RIKNKQITINCPSYIEVNYNILCAIVIFNPTESFVPFP 212 >UniRef50_Q9TCC4 Ribosomal protein S4 n=1 Tax=Nephroselmis olivacea RepID=Q9TCC4_NEPOL Length = 238 Score = 120 bits (301), Expect = 3e-26, Method: Composition-based stats. Identities = 57/197 (28%), Positives = 91/197 (46%), Gaps = 6/197 (3%) Query: 10 KLSR-REGTDLFLKSGVRAIDTKCKIEQAPGQHGAR----KPRLSDYGVQLREKQKVRRI 64 K++R ++ T L L + + + H R + + SDY Q +Q + I Sbjct: 38 KMARIKKKTQLPLSPSFKLWQRSSTLPKTASLHIKRVQKNEQKESDYFSQFTTRQTLSSI 97 Query: 65 YG-VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAI 123 YG + ++Q N +A R KG+ G L+ LLE RLD ++YR F + ARQL++H I Sbjct: 98 YGNIQKKQMNNLVNQAFRRKGHAGSRLITLLESRLDVILYRASFCTSIFTARQLINHNKI 157 Query: 124 MVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFK 183 MVNG + N ++ +SP D+VS+ + + + KP +LE+ M F Sbjct: 158 MVNGIISNSSALLLSPGDIVSVVHNYEMTLKNSIKSIQKKNLNKPNYLEISYNLMTIVFL 217 Query: 184 RKPERSDLSADINEHLI 200 P I+ I Sbjct: 218 YAPTYVFFQTYIDRDNI 234 >UniRef50_C6FG20 Ribosomal protein S4 n=2 Tax=Isoetes engelmannii RepID=C6FG20_ISOEN Length = 254 Score = 117 bits (293), Expect = 3e-25, Method: Composition-based stats. Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 12/168 (7%) Query: 4 YLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRR 63 Y P+ K RR ++++ + E ++ + S + VQLR Q++ Sbjct: 15 YHLPRFKTCRRIEENVWVWQKLTEKQKHIISELR-----RKREKQSYFSVQLRTIQRLSL 69 Query: 64 IYGVLERQFRNYYKEAARLKG-NTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKA 122 YG ++ ++A + N ++LL LE RLD ++ F +T ARQL+SHK Sbjct: 70 FYG------KSLPRKAKKHTYLNKRKSLLYYLEKRLDVILVCTHFCSTICGARQLISHKK 123 Query: 123 IMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTW 170 I VN VN ++VS D++SI E+ ++ ++ E T+ Sbjct: 124 ICVNSETVNTHGFRVSNGDLISIVEENFFLFDIREKMKTNPICEISTY 171 >UniRef50_B2MWU8 Ribosomal protein S4 n=1 Tax=Hemiselmis andersenii RepID=B2MWU8_9CRYP Length = 275 Score = 113 bits (284), Expect = 3e-24, Method: Composition-based stats. Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 4/170 (2%) Query: 1 MARYLGPKLKLSRRE-GTDLFLKSGVRAIDTKCKIEQAPGQHGARKP--RLSDYGVQLRE 57 M + L K K+ + G L + VRAI + P ++ R+S +G L Sbjct: 1 MTKRLNSKFKVCKNIKGNRKNLWAVVRAITFRSIRILKPDSISVKQKLNRISSFGKYLNG 60 Query: 58 KQKVRRIY-GVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQ 116 KQ + + Y + E+ F++ ++A + K T + L++LLE RLD V+YR GF + ARQ Sbjct: 61 KQNLIKFYCNISEKLFQSLLQQAEKSKPKTIDKLISLLESRLDVVLYRSGFVNSLHMARQ 120 Query: 117 LVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQRE 166 L++H I +N + V + + D+V I+ + + + +R Sbjct: 121 LINHGFICINSKTVYNLNITLKSGDIVEIKRDFPIKELITILKQRVFRRN 170 >UniRef50_A6YEB5 Ribosomal protein S4 n=1 Tax=Chlorokybus atmophyticus RepID=A6YEB5_CHLAT Length = 267 Score = 112 bits (280), Expect = 1e-23, Method: Composition-based stats. Identities = 62/267 (23%), Positives = 98/267 (36%), Gaps = 63/267 (23%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 M R K K RR ++ + I + S+Y +L +QK Sbjct: 1 MVRKPILKFKTCRRIQKKIWDSRKLTLKQ--ENILLKAQVSPRGFEKQSNYSKELIARQK 58 Query: 61 VRRIYGVLERQ-FRNYYKEAARLKGNTG-ENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 + IYG L+R F +K+ R + + L+LLE RLD V+ R+ + +T +EARQL+ Sbjct: 59 LSAIYGNLKRDTFIKLFKKGRRARQVKLPDTFLSLLERRLDVVLLRLKYCSTLSEARQLI 118 Query: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREK------------------------------ 148 SHK I+VN VNI+SY + D++SI + Sbjct: 119 SHKKILVNNETVNISSYLLKNGDLISIPRQELDNIKEKIFKNWTPAIGNYHGSMVGNTEF 178 Query: 149 --------------------AKKQSRVKAALELAEQREK---------PTWLEVDAGKME 179 K ++ ++ PT LE++ + Sbjct: 179 AQTSNKKKITVKLETRSRGFQKTTHLFNNIIKGGNRKNLKPDRRYLQRPTHLEINYKTLM 238 Query: 180 GTFKRKPERSDLSADINEHLIVELYSK 206 F P + DIN LI + + K Sbjct: 239 AVFIHSPHQIRWPIDINRDLIAKFFGK 265 >UniRef50_Q8M1G7 Ribosomal protein S4 n=1 Tax=Chaetosphaeridium globosum RepID=Q8M1G7_CHAGL Length = 176 Score = 111 bits (279), Expect = 1e-23, Method: Composition-based stats. Identities = 42/195 (21%), Positives = 81/195 (41%), Gaps = 28/195 (14%) Query: 8 KLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRIYGV 67 K K+SR+ G +++ + + ++ R S++ + + +K+R YG Sbjct: 2 KFKISRQIGENIWQTKKLTTRQKRILLK------IRRPSAKSNFFQRFQTFRKLRIFYGT 55 Query: 68 LERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNG 127 +Q L +E RLD ++ RM F + + ARQ ++H I VN Sbjct: 56 KPKQ------------------SLLNMEKRLDVILVRMNFCSNLSTARQWINHGFIKVNF 97 Query: 128 RVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAE--QREKPTWLEVDAGKMEGTFKRK 185 V I S ++ D+VS+ + VK ++ ++ K + LEV+ G + Sbjct: 98 SKVTIPSMLLTNGDIVSVCKNF--IPFVKKNMQKIRVFKKHKLSHLEVNYKLCIGILLFE 155 Query: 186 PERSDLSADINEHLI 200 P+ + ++I Sbjct: 156 PQSVIFPSYFERNII 170 >UniRef50_Q9G8X0 Ribosomal protein S4 n=1 Tax=Rhodomonas salina RepID=Q9G8X0_RHDSA Length = 206 Score = 111 bits (278), Expect = 1e-23, Method: Composition-based stats. Identities = 40/193 (20%), Positives = 82/193 (42%), Gaps = 5/193 (2%) Query: 17 TDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRIY-GVLERQFRNY 75 + K K ++ + R+S++G L+ KQ +R Y + E+ F+ Sbjct: 13 KKISNKYKNIWSTEKAFRLRSVRFQRKKFRRVSNFGKLLQTKQNLRFFYCNIKEKVFKKQ 72 Query: 76 YKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASY 135 K A + T + +++LE RLD +++R F + +A+Q++SH IM+N + + + Sbjct: 73 LKNAIKSPLKTVDKFISILEKRLDIILFRASFIFSLYQAKQIISHGHIMINNKTIYKLNK 132 Query: 136 QVSPNDVVSIREKAKK--QSRVKAALELAEQREKPTWLEVDAGKMEGTFKRKPERSDLSA 193 ++ D + ++ + K + + ++ P LEV F P +L Sbjct: 133 KLKQFDFIKLKIEKNKILKRIFDRFKDKILEKTIPVHLEVSFKNFTICFLWPPSFFELYY 192 Query: 194 DI--NEHLIVELY 204 I + + Y Sbjct: 193 PIKNDFAKVTRYY 205 >UniRef50_C1KRA9 Ribosomal protein S4 n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1KRA9_9CHLO Length = 261 Score = 110 bits (275), Expect = 3e-23, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 11/153 (7%) Query: 8 KLKLSRREGTDLFLKSGVR-------AIDTKCKIEQAPGQHGARKPR-LSDYGVQLREKQ 59 K K R+ ++ + A + + ++ R P+ + YG+ L + Sbjct: 6 KYKTLRQLRIPVWPWRKLNPKHTAWMAKEVRRAKKKVTKPLVPRPPKTPTFYGMTLL--R 63 Query: 60 KVRRIYGVLERQ-FRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 ++ +YG F N + +A + + + L LLE RLD ++YR F + + Q + Sbjct: 64 ILKTVYGPSNTSTFVNLFSKAKKTSVPSLQAFLQLLEMRLDVILYRARFATSYLQLHQWI 123 Query: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKK 151 +H + VNG+VV +SP DVVSI +A Sbjct: 124 AHGKVCVNGQVVTTKGRLLSPGDVVSIHPQAVS 156 >UniRef50_Q7YN81 Apicoplast 30S ribosomal protein S4 n=1 Tax=Eimeria tenella RepID=RR4_EIMTE Length = 200 Score = 109 bits (272), Expect = 8e-23, Method: Composition-based stats. Identities = 44/149 (29%), Positives = 76/149 (51%), Gaps = 8/149 (5%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 M RYLGPKLK +R + TK I + K LS Y ++L EKQK Sbjct: 1 MLRYLGPKLKKLKRLNIHM-----QPEFSTKYFILNTNKYNN--KMILSFYLLELFEKQK 53 Query: 61 VRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 ++ + + E+ + Y + NL+ ++E RLDN ++ +G+ T A+A+QL+ H Sbjct: 54 LKFTFSLSEKIIKKYILFMHKYNYKKF-NLINIIEIRLDNTIFNLGYSITIAQAKQLIIH 112 Query: 121 KAIMVNGRVVNIASYQVSPNDVVSIREKA 149 VN +++ I S+ + D++++ K+ Sbjct: 113 GYFFVNFKLIKIPSFLLKKGDIITLSPKS 141 >UniRef50_C5JVX1 30S ribosomal subunit S4 n=4 Tax=Onygenales RepID=C5JVX1_AJEDS Length = 498 Score = 107 bits (267), Expect = 3e-22, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 63/182 (34%), Gaps = 43/182 (23%) Query: 9 LKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRIYG-- 66 ++ RR L + V + K A H + K + + + K R +G Sbjct: 9 VRAGRRPAKVLQSWNKVNLYNLK----HASIPHTSNK---TFFQQKWIAKSLARTYHGEQ 61 Query: 67 VLERQFRNYY----------------------KEAARLKGNTG------------ENLLA 92 V E Q+ + + A R G G + A Sbjct: 62 VRESQWEKMFSRRLRSVVPMDANYLARNDGSFESAGRGSGVEGVGPRKAPLTPHMQMTFA 121 Query: 93 LLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQ 152 LE RLD ++R F ++ +ARQ V H + VNG + Y ++P D+ + + Sbjct: 122 PLERRLDVAIFRAMFASSTRQARQFVVHGFVTVNGTKMRHPGYLLNPGDLFQVDPERVMF 181 Query: 153 SR 154 + Sbjct: 182 AT 183 >UniRef50_UPI000196B648 hypothetical protein CATMIT_01694 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196B648 Length = 91 Score = 106 bits (266), Expect = 4e-22, Method: Composition-based stats. Identities = 47/91 (51%), Positives = 68/91 (74%), Gaps = 1/91 (1%) Query: 117 LVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREK-PTWLEVDA 175 +VSH+ + VNG+ VN+ SYQV D++++ E+A+KQ RV+ +L ++ Q + P+W+EVD+ Sbjct: 1 MVSHRGVTVNGKSVNLPSYQVKAGDIIALSERAQKQLRVQESLTVSSQMDLSPSWVEVDS 60 Query: 176 GKMEGTFKRKPERSDLSADINEHLIVELYSK 206 K G FK P+R+DL ADINE LIVELYSK Sbjct: 61 KKFSGVFKAVPDRADLPADINEALIVELYSK 91 >UniRef50_A6QVF5 Putative uncharacterized protein n=2 Tax=Onygenales RepID=A6QVF5_AJECN Length = 453 Score = 106 bits (265), Expect = 5e-22, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 61/174 (35%), Gaps = 38/174 (21%) Query: 19 LFLKSGVRAIDTKCKIEQAPGQHGARK--PRLSDYGVQLREKQKVRRIYG--VLERQFRN 74 +G + + + K+ +H + + + + K R +G V E Q+ Sbjct: 49 PIGWAGYKVLQSWNKVNLYNLKHASIPHSSSKTFFQQKWIAKSLARTYHGEQVRESQWEK 108 Query: 75 YY----------------------KEAARLKGNTG------------ENLLALLEGRLDN 100 + + A R G G + A LE RLD Sbjct: 109 MFSRRLRSVVPMDANYLARNDGSFESAGRGSGLEGVGPRRAPLTPHMQMTFAPLERRLDV 168 Query: 101 VVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSR 154 ++R F ++ +ARQ V H ++ VNG+ + Y ++ D+ + + + Sbjct: 169 AIFRAMFASSTRQARQFVIHGSVTVNGKKMRYPGYLLNSGDLFQVDPERVMFAT 222 >UniRef50_C0NY83 NAM9+ protein n=3 Tax=Onygenales RepID=C0NY83_AJECG Length = 490 Score = 106 bits (265), Expect = 5e-22, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 65/182 (35%), Gaps = 43/182 (23%) Query: 9 LKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRIYG-- 66 +K RR L + V + K A H + K + + + K R +G Sbjct: 9 VKAGRRPAKVLQSWNKVNLYNLK----HASIPHTSSK---TFFQQKWIAKSLARTYHGEQ 61 Query: 67 VLERQFRNYY----------------------KEAARLKGNTG------------ENLLA 92 V E Q+ + + A R G G + A Sbjct: 62 VRESQWEKMFSRRLRSVVPMDANYLARNDGSFESAGRGSGLEGVGPRRAPLTPHMQMTFA 121 Query: 93 LLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQ 152 LE RLD ++R F ++ +ARQ V H ++ VNG+ + Y ++P D+ + + Sbjct: 122 PLERRLDVAIFRAMFASSTRQARQFVIHGSVTVNGKKMRYPGYLLNPGDLFQVDPERVMF 181 Query: 153 SR 154 + Sbjct: 182 AT 183 >UniRef50_P27929 37S ribosomal protein NAM9, mitochondrial n=13 Tax=Saccharomycetales RepID=NAM9_YEAST Length = 486 Score = 106 bits (264), Expect = 6e-22, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 56/142 (39%), Gaps = 16/142 (11%) Query: 42 GARKPRLSDYGVQLREKQKVRRIYG--VLERQFRNYYKE--------------AARLKGN 85 G S Y + KQ+ R +G + E++++ +K + Sbjct: 33 GVDLKSKSLYQQKWTAKQETRAYHGEHLTEKRWQTVFKPKLDSVAQLDASLRGGEIKETP 92 Query: 86 TGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSI 145 A+LE RLD ++R F ++ +ARQ + H + VNG + SY + P D+ S+ Sbjct: 93 FLLQTFAVLEKRLDFALFRAMFASSVRQARQFILHGNVRVNGVKIKHPSYTLKPGDMFSV 152 Query: 146 REKAKKQSRVKAALELAEQREK 167 + ++ E + Sbjct: 153 KPDKVLEALGAKKPSFQEALKI 174 >UniRef50_Q9XQQ7 Apicoplast 30S ribosomal protein S4 n=1 Tax=Toxoplasma gondii RepID=RR4_TOXGO Length = 198 Score = 103 bits (256), Expect = 5e-21, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 8/185 (4%) Query: 24 GVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAARLK 83 + + C +K + S + +QL EKQK++ Y + E Q + Y+K LK Sbjct: 16 KLTFLPGFCTKLLKKELVPIKKGKTSSFRIQLLEKQKLKYNYRLKENQIKKYFKYIKLLK 75 Query: 84 GNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVV 143 NL+ ++E RLD ++R+GF + +ARQL++H I +N +V S+ ++ D++ Sbjct: 76 IF---NLIQIIELRLDATIFRLGFAKSINQARQLITHGFIFINSILVKKPSFILTEKDLI 132 Query: 144 SIREKAKK---QSRVKAALELAEQREKPTWLEVDAGKMEGTFKRKPERS-DLSADINEHL 199 I K R+ + + + ++ +++ L +E+L Sbjct: 133 YINPKKFTIILICRINLFFRYYNKYNLYIY-TLCVEYLKFKLQKEFYFKLYLFIPFDENL 191 Query: 200 IVELY 204 I Y Sbjct: 192 IKYYY 196 >UniRef50_Q6E781 Ribosomal protein S4 n=1 Tax=Saprolegnia ferax RepID=Q6E781_SAPFE Length = 266 Score = 101 bits (253), Expect = 1e-20, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 91/224 (40%), Gaps = 28/224 (12%) Query: 9 LKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQH-------------GARKPRLSDYGVQL 55 + +R+ F + + K P + + + Y +L Sbjct: 40 FRKTRKLDFIKFQVKMKKELKKAFKTSYKPNNNTSILSLLKKINQFKRPEKKQKLYKERL 99 Query: 56 REKQKVRRIYG-VLERQFRNYYKEAARLKGN--TGENLLALLEGRLDNVVYRMGFGATRA 112 KQ+ + YG + E Q +N + N + +LE RLD +++R T Sbjct: 100 FAKQQFKNFYGCIPEYQLKNLFNYLKNRNNNNNIIHKFIIVLESRLDMIIFRSKIAKTIF 159 Query: 113 EARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIRE--------KAKKQSRVKAALELAE- 163 EA+Q+++H I VN +++ ++Y + D++++ KK+ + + EL + Sbjct: 160 EAKQIINHGKIKVNNKIITSSNYILKRGDIITLNNFKILKKFYYLKKKKNFQKSYELIKT 219 Query: 164 -QREKPTWLEVDAGKMEGTFKRKPERSDL--SADINEHLIVELY 204 ++ K +++ + F R+P ++ D++ L+ E + Sbjct: 220 VRKNKVNYIQFNNKYNICIFLRQPLFKEIKYPFDLDLKLVDEFF 263 >UniRef50_C5DZN7 ZYRO0G05918p n=1 Tax=Zygosaccharomyces rouxii RepID=C5DZN7_ZYGRO Length = 479 Score = 101 bits (251), Expect = 2e-20, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 63/166 (37%), Gaps = 22/166 (13%) Query: 46 PRLSDYGVQLREKQKVRRIYG--VLERQFRNYY--------------KEAARLKGNTGEN 89 + Y + KQ+ R +G + E++++ ++ K + Sbjct: 37 RSKTLYQQKWTAKQETRAYHGEHLTEKRWQFFFNPKLDSVAQLDASLKGGKEEETPFLLQ 96 Query: 90 LLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKA 149 A+LE RLD V+R F ++ +ARQ + + VNG + +Y + P DV +R Sbjct: 97 TFAVLEKRLDFAVFRAMFASSVRQARQFILQGNVFVNGIKIAHPNYTLKPGDVFRVRPSK 156 Query: 150 KKQSRVKAALELAEQREKPTWLEVDAGKMEGTFKRKPERSDLSADI 195 ++ + E L+VD ++ K E + Sbjct: 157 VLEALGAKKPSVQES------LKVDKVQVTLWNKYVKEAKSNPRAV 196 >UniRef50_Q9F8G5 Ribosomal protein S4 (Fragment) n=1 Tax=Carboxydothermus hydrogenoformans RepID=Q9F8G5_CARHY Length = 155 Score = 100 bits (250), Expect = 3e-20, Method: Composition-based stats. Identities = 54/155 (34%), Positives = 73/155 (47%), Gaps = 15/155 (9%) Query: 2 ARYLGPKLKLSRREGTDLFLKSGVRAID--TKCKIEQAPGQHGARKPRLSDYGVQLREKQ 59 RY P K+ REG +LF K D + + + P Q G +P ++Y + R K Sbjct: 6 GRYTVPSXKICSREGXNLFSKXDRXDTDXXSMARRNKGPXQXGXTRPMPTEYAPRXRXKL 65 Query: 60 KVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLD-------NVVYRMGFGATRA 112 K + IYGV E QF+ A R G TGEN + LLE R D + +RA Sbjct: 66 KAKXIYGVZEVQFQTXXVMAERXXGTTGENXVVLLERRSDKHGRSDRTTL------MSRA 119 Query: 113 EARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIRE 147 ARQ+V +N R VNI SY V +V+ +E Sbjct: 120 LARQVVRLNLTPLNXRQVNILSYVVKXGEVIIPKE 154 >UniRef50_C4R204 Mitochondrial ribosomal component of the small subunit n=1 Tax=Pichia pastoris GS115 RepID=C4R204_PICPG Length = 469 Score = 100 bits (249), Expect = 3e-20, Method: Composition-based stats. Identities = 41/150 (27%), Positives = 70/150 (46%), Gaps = 21/150 (14%) Query: 34 IEQAPGQHGARKPRLSDYGVQLREKQKVRRIYG--VLERQFRNYYKE---------AARL 82 +Q PG +G S Y + K + R +G + E ++++ + A+ Sbjct: 30 KKQRPGFNGQ-----SLYQQKWNSKAETRAYHGEHLRESKWQHIFSPKLQGVAQLDASLQ 84 Query: 83 KGNTGE-----NLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQV 137 GNT E A+LE RLD ++R F ++ +ARQ + HK + VNG V+ +Y++ Sbjct: 85 GGNTDETPMMLQTFAVLEKRLDVALFRAMFASSVRQARQYIIHKYVSVNGVVMRHPNYEL 144 Query: 138 SPNDVVSIREKAKKQSRVKAALELAEQREK 167 P DV S+R ++ KA +L + Sbjct: 145 KPGDVFSVRPDKVLEALGKAKPDLKTSYKV 174 >UniRef50_Q0YR48 30S ribosomal protein S4 n=1 Tax=Chlorobium ferrooxidans DSM 13031 RepID=Q0YR48_9CHLB Length = 83 Score = 99 bits (248), Expect = 4e-20, Method: Composition-based stats. Identities = 35/83 (42%), Positives = 50/83 (60%) Query: 124 MVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFK 183 M+NG+ VNI SY VSP D++ R+++K V +L A + PTW++VD + F Sbjct: 1 MINGKKVNIPSYLVSPGDLIEFRQRSKNMDAVTDSLNKAPESRIPTWIQVDKANQKSVFL 60 Query: 184 RKPERSDLSADINEHLIVELYSK 206 PER ++ NE L+VELYSK Sbjct: 61 SVPERVEIQEPYNEQLVVELYSK 83 >UniRef50_B2XXA8 Ribosomal protein S4 n=1 Tax=Dictyostelium fasciculatum RepID=B2XXA8_9MYCE Length = 276 Score = 98.8 bits (245), Expect = 1e-19, Method: Composition-based stats. Identities = 40/192 (20%), Positives = 72/192 (37%), Gaps = 7/192 (3%) Query: 19 LFLKSGVRAIDTKCKIEQAPGQHGARKPR--LSDYGVQLREKQKVRRIYGVLERQFRNYY 76 ++ + + K + + K+ + + +QF+ Y Sbjct: 75 IWKEGQRLYWEIKQIKYNKYKLKYVDTKKYERDSIQKLVFYKRFLHYYKNISIKQFKKLY 134 Query: 77 KEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQ 136 + + K + +LEGRLD+V+ R T AR + +K I VNG+V +Y Sbjct: 135 RI-LKKKQQKLQKFWEILEGRLDSVLVRSQLVRTMYAARHFIKYKHISVNGKVKTRLNYL 193 Query: 137 VSPNDVVSIREKAKKQSRVKAALELAEQREK----PTWLEVDAGKMEGTFKRKPERSDLS 192 + D + +R K K + EL + P +LE D + T KP+ S+++ Sbjct: 194 IKIGDFIGMRRKKMKVATKIKLFELVRKGLMIGIGPAYLETDFRLLLTTMVYKPKMSEIN 253 Query: 193 ADINEHLIVELY 204 E Y Sbjct: 254 YVFTVKNYKEFY 265 >UniRef50_B9WLL6 Mitochondrial ribosome protein, small subunit n=7 Tax=Saccharomycetales RepID=B9WLL6_CANDC Length = 461 Score = 98.0 bits (243), Expect = 2e-19, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 62/165 (37%), Gaps = 23/165 (13%) Query: 48 LSDYGVQLREKQKVRRIYG--VLERQFRNYYKEAARLKGNTGENLLA------------- 92 + Y + K + R +G + E++F+N ++ + + L Sbjct: 39 KTLYQQKWAAKTETRNYHGQQIKEKRFKNVLFDSNLKTYSQLDASLKGHDVAPTPITLQT 98 Query: 93 --LLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAK 150 LE RL+ ++R F ++ +ARQ + + VNG V+ S+ + DV S+ + Sbjct: 99 YGTLEKRLEIALFRSMFASSVRQARQFILGGYVKVNGVVIKHPSFPLQSGDVFSVDPEKV 158 Query: 151 KQSRVKAALELAEQREKPTWLEVDAGKMEGTFKRKPERSDLSADI 195 + K L + L VD +++ E I Sbjct: 159 LFALGKTKPSLEKA------LSVDKKQIKKWNNYVFEAKQNPEKI 197 >UniRef50_P46743 Ribosomal protein S4, mitochondrial n=1 Tax=Prototheca wickerhamii RepID=RT04_PROWI Length = 511 Score = 97.2 bits (241), Expect = 3e-19, Method: Composition-based stats. Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 5/146 (3%) Query: 19 LFLKSGVRAIDTKCKIEQAPGQHGARK--PRLSDYGVQLREKQKVRRIYGVLE-RQFRNY 75 + LK + + + +H + + +Y L +K++ YG + +Q Sbjct: 122 IHLKKKINLLFPVQEFLFELSKHRNKSAGSKSREYLEILLCVKKLKMFYGFIPLKQLHKI 181 Query: 76 YKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASY 135 +A + G +N +L+E RLD V+YR GF T ARQ H I VN +V I S Sbjct: 182 LVQAKAMPGYFSKNFFSLIEKRLDVVLYRSGFTKTIVAARQACRHSQIYVNSKVCRIPST 241 Query: 136 QVSPNDVVSIREK--AKKQSRVKAAL 159 + D++S + + + K + +K L Sbjct: 242 ILESGDIISYKNQLDSLKTAEIKNNL 267 >UniRef50_D2JP76 Ribosomal protein S4 n=1 Tax=Synedra acus RepID=D2JP76_9STRA Length = 246 Score = 94.9 bits (235), Expect = 2e-18, Method: Composition-based stats. Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 11/143 (7%) Query: 51 YGVQLREKQKVRRIYGVLERQFRNYY--------KEAARLKGNTGENLLALLEGRLDNVV 102 Y L KQK YG L+++F K +LK LL+LLE RLD ++ Sbjct: 78 YKTILHNKQKTSFYYGGLKKKFWKKQINHVLTRKKSFFKLKSFKHLALLSLLERRLDVLL 137 Query: 103 YRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELA 162 YR F + ARQL+ + +N V+ +S ++ ND VS+ + +K V L+ + Sbjct: 138 YRAHFAPSIKYARQLIQQGHVNLNNSVITESSVRLKNNDKVSLNKISKN--LVYDNLKNS 195 Query: 163 EQREKPT-WLEVDAGKMEGTFKR 184 P +L ++ E F Sbjct: 196 TLWPLPPKYLAINYKTFEIIFTD 218 >UniRef50_B6HQM4 Pc22g11690 protein n=15 Tax=Eurotiomycetidae RepID=B6HQM4_PENCW Length = 457 Score = 93.8 bits (232), Expect = 3e-18, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 53/173 (30%), Gaps = 45/173 (26%) Query: 16 GTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRIYG--VLERQFR 73 G S + + + + + K R +G V E Q++ Sbjct: 12 GKIRQSWSKYNLYNMQRFRSPP-------TTNRTFFQQKWSAKAASRAYHGEQVREGQWK 64 Query: 74 NYY-------------------------------KEAARLKGNT-----GENLLALLEGR 97 + + + T A LE R Sbjct: 65 RMFNHRIRSVIPMNASDLAADDGSLVSSGRGSGLDKGGKPAYQTRPTPYTHMTFAPLERR 124 Query: 98 LDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAK 150 LD ++R F ++ +ARQ V H A+ VNG+ + SY ++P D+ + Sbjct: 125 LDVAIFRALFASSARQARQFVIHGAVTVNGQKMKHPSYLLNPGDLFQVDPDRV 177 >UniRef50_Q31708 Ribosomal protein S4, mitochondrial n=44 Tax=Magnoliophyta RepID=RT04_ARATH Length = 362 Score = 92.6 bits (229), Expect = 7e-18, Method: Composition-based stats. Identities = 39/188 (20%), Positives = 78/188 (41%), Gaps = 19/188 (10%) Query: 8 KLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKP-----RLSDYGVQLREKQKVR 62 + + R +++ + + + + ++ L+ Y +QL+ +K+ Sbjct: 18 RFQTCRLLSGNVWNRELTIIQRRILRRLRNRKRSIKKRKIYPKKYLTSY-IQLQTTRKLP 76 Query: 63 RIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKA 122 YG L + K + L LE R D + R+ F T +ARQL+SH+ Sbjct: 77 FFYGDLP-----ITEMHRGTKRTSYIPFLLNLETRFDVIPLRLYFLETIPQARQLISHRR 131 Query: 123 IMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTF 182 + VN +V+I +++S D++S +E A+ E+ + + E+ K+ G Sbjct: 132 VCVNKGMVSITHFKLSHGDIISFQE--------NNAIIRGEEIRRSFYKEILVEKIIGKL 183 Query: 183 KRKPERSD 190 +P R Sbjct: 184 LHQPLRMW 191 >UniRef50_B2W5M8 Putative uncharacterized protein n=2 Tax=Pleosporineae RepID=B2W5M8_PYRTR Length = 426 Score = 92.6 bits (229), Expect = 7e-18, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 56/157 (35%), Gaps = 37/157 (23%) Query: 48 LSDYGVQLREKQKVRRIYG--VLERQFRNYYK---------------------------- 77 + + + K R +G + E+++++ ++ Sbjct: 39 RTYFQQKWTAKASTRAYHGEHIREKKWKHMFRRNLPAVVAMDHRYLARHDGSEQAAGRGM 98 Query: 78 ---EAARLKGNTGENLLAL----LEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVV 130 +A + + + + LE RLD ++R F ++ +ARQ V H + VNG+ + Sbjct: 99 GADQAEKARTPPMTPYMQMAYYPLERRLDTAIFRALFASSVRQARQFVVHGLVKVNGKKM 158 Query: 131 NIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREK 167 Y ++P D+ + + + + R Sbjct: 159 IYPGYALNPGDMFQVEPSSVMFATGAPKTRSSTARRV 195 >UniRef50_Q2TUD0 Ribosomal protein S4 n=1 Tax=Dictyota dichotoma RepID=Q2TUD0_DICDH Length = 237 Score = 92.2 bits (228), Expect = 1e-17, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 65/185 (35%), Gaps = 14/185 (7%) Query: 9 LKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLS--DYGVQLREKQKVRRIYG 66 +K R G K K P + + + L VRR YG Sbjct: 31 VKWDRILGVLSSRKRRRYQKLCKNYNLVGPTSRPNQPYKYPRWYFKNSLSNGVCVRRFYG 90 Query: 67 VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVN 126 L + K T ++ + LE RL +YR+GF ++ E++Q + H ++VN Sbjct: 91 DLRFEMLKSM----CNKAKTVDSFMKCLESRLGINLYRLGFFSSVFESKQAILHGKVLVN 146 Query: 127 GRVVNIASYQVSPNDVVSIREKAKK--------QSRVKAALELAEQREKPTWLEVDAGKM 178 G + Y + P D++ K + + + + + P W++ D + Sbjct: 147 GVKITFDHYILKPGDLIEFCPKFRSKLKSRMITRRKNINYSDRLKLNPTPFWIQTDYSNL 206 Query: 179 EGTFK 183 Sbjct: 207 SFIIL 211 >UniRef50_A8Q6S4 Putative uncharacterized protein n=1 Tax=Malassezia globosa CBS 7966 RepID=A8Q6S4_MALGO Length = 431 Score = 92.2 bits (228), Expect = 1e-17, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 63/184 (34%), Gaps = 34/184 (18%) Query: 20 FLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRIYG--VLERQFRNYY- 76 + + + + + + K ++ Y + R K+ +R +G + ER+F+ ++ Sbjct: 18 WSPRNLYNLIARSSTGRLVNELNFTKTSMTMYQQRWRSKRMLRGYHGDWIPERRFKRWFL 77 Query: 77 -------------------------KEAARLKGNTGENLLALLEGRLDNVVYRMGFGATR 111 + +E R+D V+R F + Sbjct: 78 PTSLPSYAPSFLSTVKPLSDADESDHALDSPTPPVKSLFMRDVERRIDTAVFRCCFAHSV 137 Query: 112 AEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQ------SRVKAALELAEQR 165 AR LV H + +NG V Y + P D++S+ RV+A E + Sbjct: 138 YYARSLVLHGKVSLNGNVHRDPGYLLQPGDLLSVEPSCVPMLNGHVAKRVQADRERHAVK 197 Query: 166 EKPT 169 + P Sbjct: 198 KSPP 201 >UniRef50_Q3S297 Ribosomal protein S4 n=1 Tax=Thalassiosira pseudonana RepID=Q3S297_THAPS Length = 248 Score = 91.8 bits (227), Expect = 1e-17, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 69/163 (42%), Gaps = 12/163 (7%) Query: 54 QLREKQKVRRIYGVLERQFRN-----YYKEAARLKGNTGENLLALLEGRLDNVVYRMGFG 108 L+ KQ++ YG L + + KE+ + L+ LE RLD ++YR F Sbjct: 88 NLQNKQRLSLFYGNLRKSYLKKLVKESLKESKHINSQATVLLIEKLETRLDTILYRTHFC 147 Query: 109 ATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKP 168 + A+QL+SH+ I VN ++V + + D++++ + + V + + +E P Sbjct: 148 HSFRSAKQLISHQKIYVNNKIVKHNFHALKKGDIITLDKS--ITNFVASNILKSEMWPIP 205 Query: 169 T-WLEVDAGKMEGTFKRKPE----RSDLSADINEHLIVELYSK 206 ++ ++ + S I+ + + Y K Sbjct: 206 PKHFYINYRTLQILIIEDIKYSNCFSYYPFWIDFNSFIRFYEK 248 >UniRef50_O60063 Putative 40S ribosomal protein S4-like n=2 Tax=Schizosaccharomyces RepID=YBB1_SCHPO Length = 327 Score = 90.3 bits (223), Expect = 4e-17, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 68/158 (43%), Gaps = 18/158 (11%) Query: 8 KLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRIYG- 66 K + S + G + + +Q P + + Y + K++ R +G Sbjct: 4 KFRFSLKRGLLRPSWNKYNIYN--IARKQLPALNNR-----TLYQKKWNAKKETRSYHGP 56 Query: 67 -VLERQFRNYYKEAARLKGNTGENLL---------ALLEGRLDNVVYRMGFGATRAEARQ 116 + E Q +N ++ ++ +N L A LE RLD ++R F ++ +ARQ Sbjct: 57 QLREYQLKNAFRPKLEGVISSLDNKLPIPFMNQTYAFLESRLDMSIHRALFASSALQARQ 116 Query: 117 LVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSR 154 LV H + VNG+ A Q+ P D+V++ +K+ Sbjct: 117 LVLHGKVHVNGKPERRAYRQLLPGDLVTVDQKSVMNCV 154 >UniRef50_UPI000169316E RpsD n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI000169316E Length = 82 Score = 89.5 bits (221), Expect = 7e-17, Method: Composition-based stats. Identities = 38/83 (45%), Positives = 55/83 (66%), Gaps = 2/83 (2%) Query: 124 MVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFK 183 VNG+ V+IASYQVS DV+ +RE+++ +K ALE + P +LE + +EG F Sbjct: 2 TVNGKKVDIASYQVSVGDVIGLRERSRNLKSIKEALE--NRNFLPAYLEFNEQALEGKFI 59 Query: 184 RKPERSDLSADINEHLIVELYSK 206 R PERS+L+ +I+E IVE YS+ Sbjct: 60 RLPERSELAQEIDEKQIVEFYSR 82 >UniRef50_P0C5Y3 Ribosomal protein S4, mitochondrial n=3 Tax=Dictyostelium RepID=RT04_DICCI Length = 325 Score = 89.2 bits (220), Expect = 7e-17, Method: Composition-based stats. Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 14/170 (8%) Query: 2 ARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKV 61 Y KLK + K R I K + +H + L + Sbjct: 64 TTYTRKKLKRILSLLFRIGGKIYRRKIKKKKINLKKKEEH---------FTNNLILYRLF 114 Query: 62 RRIYGVLE-RQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSH 120 R+ Y L+ +QF+ YK+ + + ++ LE R+D ++ R GF + EARQL++H Sbjct: 115 RKFYINLKLKQFKRLYKKYKGNE----KIIIQQLEKRIDMILLRSGFVRSIYEARQLINH 170 Query: 121 KAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTW 170 K I+VNG + I SY ++ D++SI+E + KQ+ + ++ + P Sbjct: 171 KHILVNGNIARIPSYTLNVGDIISIKEGSHKQNLIHRLKKILLPKVVPEH 220 >UniRef50_Q2H0I0 Putative uncharacterized protein n=1 Tax=Chaetomium globosum RepID=Q2H0I0_CHAGB Length = 382 Score = 88.8 bits (219), Expect = 9e-17, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 41/81 (50%) Query: 88 ENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIRE 147 + + A +E RLD ++R F ++ +ARQ V H A+ VNG+ + Y ++P D+ + Sbjct: 47 QMMFAPMERRLDIAIFRALFASSARQARQFVLHGAVTVNGKKMTYPGYLLNPGDMFQVEI 106 Query: 148 KAKKQSRVKAALELAEQREKP 168 + + K + ++ P Sbjct: 107 ERVMAATGKPKRKSGGSQKAP 127 >UniRef50_Q9T225 Ribosomal protein S4 n=3 Tax=Phytophthora RepID=Q9T225_PHYIN Length = 153 Score = 88.0 bits (217), Expect = 2e-16, Method: Composition-based stats. Identities = 34/149 (22%), Positives = 73/149 (48%), Gaps = 7/149 (4%) Query: 4 YLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRL----SDYGVQLREKQ 59 L P+ K+ + ++ + +++K ++ + + +L EKQ Sbjct: 3 KLKPRNKICFQNNKNIHKNLNLLKLNSKKWNLFKKKLRYRKEIKPEKRKKFFQKRLFEKQ 62 Query: 60 KVRRIYG-VLERQFRNYYKEAAR--LKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQ 116 + R YG + E Q +N +++ ++ K N + + LLE RLD + R+ T +A+Q Sbjct: 63 QFRNFYGCIHEYQLKNIFRKLSKKDNKINIFKKFIILLESRLDINLVRLKLVKTIFKAKQ 122 Query: 117 LVSHKAIMVNGRVVNIASYQVSPNDVVSI 145 L++HK I VN ++++ ++ + D++ I Sbjct: 123 LINHKKIKVNNKIISKPNFILQKGDIIHI 151 >UniRef50_Q2TUL0 Ribosomal protein S4 n=11 Tax=Phaeophyceae RepID=Q2TUL0_FUCVE Length = 271 Score = 88.0 bits (217), Expect = 2e-16, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 60/150 (40%), Gaps = 24/150 (16%) Query: 61 VRRIYGVL-ERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVS 119 +RR YG L ++F+ K ++ KG++ + L+ LE RLD +YR+GF + +RQ + Sbjct: 100 IRRFYGDLGHKKFKKSCKLLSKSKGSS-QKLIGNLEKRLDVTLYRLGFFHSILYSRQAIL 158 Query: 120 HKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQR-------------- 165 H I+VNG+ +N ++ + D V + + R Sbjct: 159 HNKIIVNGKFINNGNFMLRKGDFVEFCPTQRINIQASLLSRYKHFRSFRMRMERWRLSYR 218 Query: 166 --------EKPTWLEVDAGKMEGTFKRKPE 187 P W++ D + E Sbjct: 219 FKYDLHLQPTPAWIQTDYSNLSFILTSDVE 248 >UniRef50_Q8W9R0 Ribosomal protein S4 n=1 Tax=Mesostigma viride RepID=Q8W9R0_MESVI Length = 270 Score = 87.2 bits (215), Expect = 3e-16, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 60/140 (42%), Gaps = 5/140 (3%) Query: 15 EGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRIYG-VLERQFR 73 K + + + ++ ++P LS +G +L+ K+ + IYG + Q++ Sbjct: 9 LKHVKASKLKNKELIFFQNSIKKRRKNQLKRP-LSSFGKRLQTKKALEAIYGKLSIPQWK 67 Query: 74 NYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIA 133 N + + K + LE RLD V+ + F ++ ARQ + H+ I VN ++V Sbjct: 68 NIISKKNKPKVTS---FFLNLERRLDRVICQARFASSSNMARQWILHEKIFVNNQLVTYP 124 Query: 134 SYQVSPNDVVSIREKAKKQS 153 + D++S+ Sbjct: 125 GTILKNGDIISLSPDMFSLM 144 >UniRef50_Q6CF39 YALI0B10494p n=1 Tax=Yarrowia lipolytica RepID=Q6CF39_YARLI Length = 571 Score = 86.8 bits (214), Expect = 3e-16, Method: Composition-based stats. Identities = 32/212 (15%), Positives = 66/212 (31%), Gaps = 38/212 (17%) Query: 17 TDLFLKSGVRAIDTKCKIEQAPGQHGAR--KPRLSDYGVQLREKQKVRRIYG-------- 66 +LF + + + + + + + K+++R +G Sbjct: 6 KNLFSLARGKVRASWNPRNLYNLYKKTDFLRDEKTLFQKKWASKRELRAYHGEHIREGTL 65 Query: 67 --VLERQFRNYYKEA--------------------------ARLKGNTGENLLALLEGRL 98 + ++ + +LK LE RL Sbjct: 66 TTQIPKKLQGVVLPLGDDVTSEGIMANRFDDQMLEFDAEGNKKLKTPFAMQTFVHLEKRL 125 Query: 99 DNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAA 158 D V+R F A+ +A Q + + VNG + ASY + P D++S++ + + KA Sbjct: 126 DFAVFRSMFAASIRQAGQFIRQGNVTVNGVKIKHASYTLKPGDLISVKPEKVLFAAGKAK 185 Query: 159 LELAEQREKPTWLEVDAGKMEGTFKRKPERSD 190 + E + + PE+ Sbjct: 186 PSVEEAVKIDNRQIKKYNQYIKKCNDDPEKMW 217 >UniRef50_B2B283 Predicted CDS Pa_6_5850 n=1 Tax=Podospora anserina RepID=B2B283_PODAN Length = 449 Score = 86.8 bits (214), Expect = 4e-16, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 53/155 (34%), Gaps = 47/155 (30%) Query: 49 SDYGVQLREKQKVRRIYG--VLERQFRNYY------------------------------ 76 + + + K R +G + E+Q+ + Sbjct: 42 TFFQQKWHAKAATRAYHGEHIKEKQWERMFSRRLLSAVNMDPAYMAKYDGSEQAAGRGSG 101 Query: 77 ------KEAARLKGNTG---------ENLLALLEGRLDNVVYRMGFGATRAEARQLVSHK 121 + + NTG + A E RLD V+R F ++ +ARQ V H Sbjct: 102 RDVKPGRSEKNVARNTGNAEGMTPYMQMTFAPQERRLDISVFRALFASSARQARQFVIHG 161 Query: 122 AIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVK 156 A+ VNG+ + Y ++P D+ + + + + Sbjct: 162 AVKVNGKKMQHPGYLLNPGDLFQVDPEKVMIATGR 196 >UniRef50_B8PNL6 Predicted protein n=2 Tax=Agaricomycetes RepID=B8PNL6_POSPM Length = 345 Score = 86.1 bits (212), Expect = 7e-16, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 59/148 (39%), Gaps = 42/148 (28%) Query: 44 RKPRLSDYGVQLREKQKVRRIYG--VLERQFRNYY------------------------- 76 + S Y + K +R +G + E+ F+ +Y Sbjct: 41 TRTNRSLYQQRWVSKALLRAYHGDYINEKIFKRWYLPQTLPDVRETLSTPLLPRESVNKW 100 Query: 77 --------KEAARLKG-------NTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHK 121 KEA RL+ G + +E R+D +++R F + EAR++V H Sbjct: 101 ALREDAAQKEAKRLQNEREKGLAPVGSLMFREVERRIDVLLFRACFAHSVYEARRMVVHG 160 Query: 122 AIMVNGRVVNIASYQVSPNDVVSIREKA 149 +++NG+ + +++P D+ S+ KA Sbjct: 161 DVLLNGKKHTNPNTRLAPGDMFSVDPKA 188 >UniRef50_A7F6V8 Putative uncharacterized protein n=2 Tax=Sclerotiniaceae RepID=A7F6V8_SCLS1 Length = 425 Score = 84.9 bits (209), Expect = 1e-15, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 54/167 (32%), Gaps = 50/167 (29%) Query: 22 KSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRIYG--VLERQFRNYYK-- 77 + + + + G + + + + K R +G + E Q+ ++ Sbjct: 17 WNKINLYNLSRYKPRPEGN--------TFFQQKWKAKSLSRAYHGEQIREGQWTRMFRPR 68 Query: 78 --------------------------------------EAARLKGNTGENLLALLEGRLD 99 + R + + A +E RLD Sbjct: 69 AKAVIPMDYKYLAEHDGSELAAGRGSGLEILKGAGSAAQFNRNQIPYMSMVYAPIERRLD 128 Query: 100 NVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIR 146 ++R F ++ +ARQ V H + VNG+ + Y ++P D+ + Sbjct: 129 TAIFRALFASSTRQARQFVVHGKVKVNGKKMPYPGYLLNPGDMFQVD 175 >UniRef50_C7ZPJ0 Putative uncharacterized protein n=2 Tax=Nectriaceae RepID=C7ZPJ0_NECH7 Length = 511 Score = 84.5 bits (208), Expect = 2e-15, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 36/63 (57%) Query: 88 ENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIRE 147 + A LE RLD V+R F ++ +ARQ + H A+ VNG+ + SY ++P D+ ++ Sbjct: 154 QMTFAPLERRLDTAVFRAMFASSVRQARQFIIHGAVKVNGKKMVHPSYALNPGDMFQVQI 213 Query: 148 KAK 150 + Sbjct: 214 EKV 216 >UniRef50_P46755 Ribosomal protein S4, mitochondrial n=1 Tax=Acanthamoeba castellanii RepID=RT04_ACACA Length = 374 Score = 83.4 bits (205), Expect = 4e-15, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 77/167 (46%), Gaps = 4/167 (2%) Query: 43 ARKPRLSDYGVQLREKQKVRRIYGVLER-QFRNYYKEAARLKGNTGENLLALLEGRLDNV 101 + + S + ++ +KV +G + F Y A L + +LEGRL+N Sbjct: 205 KKTKKWSLFALKNIYYKKVSLFFGFRKVVDFFKVYNLAGALAKGNSFAVFLMLEGRLENF 264 Query: 102 VYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALEL 161 + R+ + ++ + + + VN +++N SY ++ N++VS +K K+ +L Sbjct: 265 LMRLNLFPSIYFIKKFIEYGNVFVNNKIINYTSYHLNFNEIVSFNKKYYKKLYFFIKSKL 324 Query: 162 AEQR---EKPTWLEVDAGKMEGTFKRKPERSDLSADINEHLIVELYS 205 +++ P+++EVD + R P+ L+ ++ +L + S Sbjct: 325 RQRKVIINAPSFVEVDYKLLVAMLIRNPDELALTKPLSFNLYTKFLS 371 >UniRef50_B2XX60 Ribosomal protein S4 n=2 Tax=Polysphondylium pallidum RepID=B2XX60_POLPA Length = 268 Score = 82.2 bits (202), Expect = 1e-14, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 77/189 (40%), Gaps = 16/189 (8%) Query: 32 CKIEQAPGQHGA-RKPRLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAA---------- 80 ++Q H R+ +++ V L+ +V + R+FR YYK Sbjct: 69 RILKQIKQNHWRIRQTKITLKKVNLKNMNRVYYRKFSIYRKFRYYYKNLKIRQIKNIYSQ 128 Query: 81 -RLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSP 139 + + + +LE RLD+++ R F T AR + + I VNG ++N +Y + Sbjct: 129 LKRNKKKVKIFMEILECRLDSILVRSNFFQTMYSARHFIKYNHISVNGILINKINYNTNI 188 Query: 140 NDVVSIREKAKKQSRVKAALELAEQRE----KPTWLEVDAGKMEGTFKRKPERSDLSADI 195 D++ + + K K +L + + P +LE D + T KP + ++ Sbjct: 189 GDLIGLNKNDIKLKIKKILKKLVRKHKFISTSPAFLETDYRLLLTTLIYKPRKEEIKYLF 248 Query: 196 NEHLIVELY 204 ++ + Sbjct: 249 TLKSLITYF 257 >UniRef50_Q09MH6 Ribosomal protein S4 n=10 Tax=Citrus RepID=Q09MH6_CITSI Length = 116 Score = 78.8 bits (193), Expect = 1e-13, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 7/84 (8%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQK 60 M+RY GP+ K RR G + + +K + ++ R + S Y ++L EKQK Sbjct: 1 MSRYRGPRFKKIRRLGA-------LPGLTSKRPRAGSDFRNQLRSVKKSQYRIRLEEKQK 53 Query: 61 VRRIYGVLERQFRNYYKEAARLKG 84 +R YG+ ERQ N + + KG Sbjct: 54 LRFHYGLTERQLLNMFVSPEKPKG 77 >UniRef50_B0BLG9 Ribosomal protein S4 n=1 Tax=Cycas taitungensis RepID=B0BLG9_CYCTA Length = 348 Score = 78.4 bits (192), Expect = 1e-13, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 66/188 (35%), Gaps = 24/188 (12%) Query: 10 KLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQ-------LREKQKVR 62 K R L + + + + R + + Y Q L+ +K+ Sbjct: 7 KTCR----PLSGNVRNKKLTRIQRRIPRRLRSKRRSIKKNIYPRQNLNSYIKLQTIRKLP 62 Query: 63 RIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKA 122 +G L K + + L E R D + R F T +ARQ +SH+ Sbjct: 63 LSHGNLP-----IIKMHGGTERTSYIPFLFNPETRSDVIPVRPHFRETIPQARQPISHRK 117 Query: 123 IMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTF 182 I N +VNI +VS D + I++ ++ + ++ ++ E+ + Sbjct: 118 IRANNEMVNITRSKVSHGDPIPIKDNYV-RTMGREIIKY-------SYTEILVNGIMRKS 169 Query: 183 KRKPERSD 190 PER Sbjct: 170 LDHPERMW 177 >UniRef50_Q5KLM6 Nam9 protein, mitochondrial, putative n=2 Tax=Filobasidiella neoformans RepID=Q5KLM6_CRYNE Length = 317 Score = 78.4 bits (192), Expect = 2e-13, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 52/164 (31%), Gaps = 42/164 (25%) Query: 28 IDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRIYG--VLERQFRNYYKEAA----- 80 +H + + + ++ K+ +R +G + +F +Y Sbjct: 32 WQRSSPESPIRREHDFTRTNATPFQLRWIAKRLLRGYHGDHIGYTKFARWYMPEKLPAIH 91 Query: 81 -----------------------------------RLKGNTGENLLALLEGRLDNVVYRM 105 + G L A +E RLD +++R Sbjct: 92 EGGKNDVGEMGKWIEGRERAGGRTRDEKKAKSKAKDSRAPVGTMLFADIERRLDVLIFRS 151 Query: 106 GFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKA 149 F EAR+ V + +NG+V+ + ++P DV ++ Sbjct: 152 CFAQNVWEARRYVVQGHVKLNGQVMRNPNIMLNPGDVFTVNPSQ 195 >UniRef50_Q0YR49 Ribosomal protein S4 n=1 Tax=Chlorobium ferrooxidans DSM 13031 RepID=Q0YR49_9CHLB Length = 84 Score = 78.4 bits (192), Expect = 2e-13, Method: Composition-based stats. Identities = 35/79 (44%), Positives = 50/79 (63%), Gaps = 5/79 (6%) Query: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKP-RLSDYGVQLREKQ 59 MAR+ G K+SRR G L K+ + PGQHG + ++S+Y +QLREKQ Sbjct: 1 MARFRGSITKVSRRLGVALTPKAEKY----LERRPFPPGQHGQSRKGKVSEYALQLREKQ 56 Query: 60 KVRRIYGVLERQFRNYYKE 78 K++ IYG+LE+QFRNY+ + Sbjct: 57 KMKYIYGILEKQFRNYFMK 75 >UniRef50_A0SNY6 Ribosomal protein S4 n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=A0SNY6_9EURY Length = 187 Score = 76.8 bits (188), Expect = 4e-13, Method: Composition-based stats. Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 7/99 (7%) Query: 65 YGVLERQFRNYYKEAARLKGNTGENLL-----ALLEGRLDNVVYRMGFGATRAEARQLVS 119 + ++ K G T E +L A LE RL VV++ G T +ARQL++ Sbjct: 65 HDTSDKIIARMVKFGILENGATLEKVLDITPNAFLERRLQTVVFKKGLARTIKQARQLIT 124 Query: 120 HKAIMVNGRVVNIASYQVSPN--DVVSIREKAKKQSRVK 156 H I VN + V+I Y V+ D +S + VK Sbjct: 125 HGFIAVNMKRVSIPGYMVTTAEDDKISYYKPIDINVNVK 163 >UniRef50_B5SQ81 Putative ribosomal protein S4 (Fragment) n=1 Tax=Blastocystis sp. NandII RepID=B5SQ81_9STRA Length = 1017 Score = 76.8 bits (188), Expect = 4e-13, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 52/172 (30%), Gaps = 16/172 (9%) Query: 16 GTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRI---YGVLERQF 72 + + K + H + + Y + KQ +R+ Y E + Sbjct: 21 NISILNTKKKKWNGLKNNSKGKYIYHYKKLKIENLYNYKFINKQILRKYLAIYNDNEFKL 80 Query: 73 RNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNI 132 R N E RLD +Y F + A+ ++ + VN + + Sbjct: 81 -----ILKRNYLN--------FEKRLDFNLYHANFVNSIYAAKFFITKGCVFVNKKKITS 127 Query: 133 ASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFKR 184 +Y + ND+V I + ++ LE+D F Sbjct: 128 FNYILKKNDIVEINSIFYNYIINNISFNDFNKKNYIRNLEIDYKTFSFIFLD 179 >UniRef50_Q7SA90 Predicted protein n=3 Tax=Fungi/Metazoa group RepID=Q7SA90_NEUCR Length = 468 Score = 76.1 bits (186), Expect = 6e-13, Method: Composition-based stats. Identities = 32/216 (14%), Positives = 64/216 (29%), Gaps = 80/216 (37%) Query: 3 RYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVR 62 +Y K K R + K + + T + + G+ + + + K R Sbjct: 8 KYHSLKKKPIR----PTWNKYNLYNLATAGREPRISGK--------TFFQQKWLAKSLTR 55 Query: 63 RIYG--VLERQFRNYYKE------------------------------------------ 78 +G + ER++ + Sbjct: 56 AYHGEHIKERKWARMFSRRLPAVVNMDPAYMAKYNGSEQAAGRGSGLSEPPAYEKTADEK 115 Query: 79 ---------AARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRV 129 ++ + A LE RLD ++R F ++ +ARQ+V H A+ VNG+ Sbjct: 116 PAKQVIANPGRKVPTPYEQMTFAPLERRLDIAIFRALFASSARQARQMVVHGAVTVNGKK 175 Query: 130 ---------------VNIASYQVSPNDVVSIREKAK 150 + Y ++P D+ + + Sbjct: 176 ACTPSQRSNTESHNTMKHPGYLLNPGDLFQVDVERV 211 >UniRef50_Q4MYC2 Ribosomal protein S4, putative n=1 Tax=Theileria parva RepID=Q4MYC2_THEPA Length = 205 Score = 76.1 bits (186), Expect = 8e-13, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 63/146 (43%), Gaps = 14/146 (9%) Query: 4 YLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRR 63 Y KLK R+ + + + TK I +H ++ +L + ++ Sbjct: 3 YNIKKLKTLRKFNL-----TNIYELTTKTNIIFKKKKHIYKEYKLP------TNIKILKI 51 Query: 64 IYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAI 123 +Y V +++ + + + + L +L+ RLD V++ +T +++Q +SHK I Sbjct: 52 LYDVKDKKLKYSFNKFLFVNIYK---FLKILKSRLDFVLFNNNLFSTINQSKQNISHKHI 108 Query: 124 MVNGRVVNIASYQVSPNDVVSIREKA 149 +N + SY V D++ + + Sbjct: 109 FLNNTIARHPSYCVKNLDIIHLYNIS 134 >UniRef50_Q0W1V5 30S ribosomal protein S4P n=1 Tax=uncultured methanogenic archaeon RC-I RepID=RS4_UNCMA Length = 205 Score = 75.7 bits (185), Expect = 9e-13, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 37/71 (52%) Query: 67 VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVN 126 V + Q KE A+L+ + ++E RL ++YR GF + +ARQ + H I +N Sbjct: 81 VKKLQTLGILKEDAKLEDVLALKVDDIMERRLQTIIYRKGFANSIKQARQFIVHGHISLN 140 Query: 127 GRVVNIASYQV 137 GR + + Y V Sbjct: 141 GRKITVPGYLV 151 >UniRef50_B1L795 30S ribosomal protein S4P n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=RS4_KORCO Length = 166 Score = 75.3 bits (184), Expect = 1e-12, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 6/98 (6%) Query: 67 VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVN 126 + + Q + A L ++ LE RL +V+R GF + ARQL++H I VN Sbjct: 73 IKKLQALGILSKDATLDDLLDLSVEQFLERRLQTIVWRKGFAKSPYMARQLITHGHIRVN 132 Query: 127 GRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQ 164 GR + SY V I E+ K + + LE+ ++ Sbjct: 133 GRRIRQPSYLVK------IEEEDKIECLHPSCLEVEKE 164 >UniRef50_Q74NF7 30S ribosomal protein S4P n=4 Tax=Archaea RepID=RS4_NANEQ Length = 180 Score = 74.9 bits (183), Expect = 2e-12, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 54/150 (36%), Gaps = 15/150 (10%) Query: 13 RREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR-------KPRLSDYGVQLREKQKV-RRI 64 R+ R I K +++ ++ + Y L KQ + I Sbjct: 6 RKWEGPSHPWQKQRLIIEKRLMKEYGLKNKRELWIAETIARKWRAYARYLNAKQAAGQDI 65 Query: 65 YGVLERQFRNYYKEAARLKGNTGENLLAL-----LEGRLDNVVYRMGFGATRAEARQLVS 119 ER K + +++L L LE RL ++ R G T +ARQ + Sbjct: 66 SEEKERFLTKLKKLGVLSENAELDDVLDLTVKDVLERRLQTMLVRKGLAKTMKQARQFIV 125 Query: 120 HKAIMVNGRVVNIASYQVS--PNDVVSIRE 147 H IMVNG VV+ SY V D + Sbjct: 126 HGHIMVNGEVVDAPSYLVKKEEEDKIEFVP 155 >UniRef50_C3N052 30S ribosomal protein S4P n=29 Tax=Archaea RepID=RS4_SULIA Length = 181 Score = 74.1 bits (181), Expect = 2e-12, Method: Composition-based stats. Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 7/80 (8%) Query: 67 VLERQFRNYYKEA--ARLKGNTGENLLAL-----LEGRLDNVVYRMGFGATRAEARQLVS 119 V E+Q + + + T +++L+L LE RL +VY+ G T +ARQL+ Sbjct: 68 VREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLII 127 Query: 120 HKAIMVNGRVVNIASYQVSP 139 H I VNG+ V Y V+ Sbjct: 128 HGHIAVNGKRVTSPGYIVNV 147 >UniRef50_Q46GC8 30S ribosomal protein S4P n=3 Tax=Methanosarcina RepID=RS4_METBF Length = 216 Score = 73.7 bits (180), Expect = 3e-12, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 28/54 (51%) Query: 92 ALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSI 145 +LE RL V R+G T +ARQ ++H I +NGR + VS D + I Sbjct: 107 NILERRLQTQVLRLGLARTVVQARQFITHGHIAINGRKATVPGMLVSKEDEMHI 160 >UniRef50_Q4P4E5 Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4P4E5_USTMA Length = 464 Score = 73.0 bits (178), Expect = 5e-12, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 1/83 (1%) Query: 85 NTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVS 144 T + +E RLD VV+R F + E+R +V + +NG + + + P D++S Sbjct: 148 PTASLFMRDVERRLDVVVFRSCFARSAYESRSMVVQGKVTLNGVKCSNPNQLLEPGDLIS 207 Query: 145 IREKAKKQSRVKAALELAEQREK 167 ++ A + + A+ ++ Sbjct: 208 VQPSAVPM-LSEELAKRAKAQKL 229 Score = 39.5 bits (91), Expect = 0.079, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 25/59 (42%), Gaps = 2/59 (3%) Query: 20 FLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRIYG--VLERQFRNYY 76 + + + + Q K L+ Y + R K+ +R +G + E++F+ ++ Sbjct: 18 WSARNLYNTIARSTVPFHASQTTFTKTSLTMYQQRWRSKRFLRAYHGDWIPEKRFKRWF 76 >UniRef50_Q9TAI3 Ribosomal protein S4 n=1 Tax=Cafeteria roenbergensis RepID=Q9TAI3_CAFRO Length = 1641 Score = 72.6 bits (177), Expect = 8e-12, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 58/151 (38%), Gaps = 14/151 (9%) Query: 4 YLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRR 63 + G K + R G +R I + ++ ++ Y + K ++ R Sbjct: 43 HKGDKGRKVR--GIHSLKWYKMRYIFGLKFFNFSS----KKRRKVRFYLQKNLYKVELYR 96 Query: 64 IYGVL-------ERQFRNYYK-EAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEAR 115 G L + + RN++K + + + N + E RLD + +RM T A Sbjct: 97 KKGFLSFYRKLDDSKIRNWFKHQYNKSRQFKIINFFKMFETRLDVISFRMKLTPTIFLAN 156 Query: 116 QLVSHKAIMVNGRVVNIASYQVSPNDVVSIR 146 + + + +N + SY++ D++S Sbjct: 157 MFIKTRGLQINYGLKKEPSYRLQIGDLISFE 187 >UniRef50_D1Z0V6 30S ribosomal protein S4P n=1 Tax=Methanocella paludicola SANAE RepID=D1Z0V6_METPS Length = 208 Score = 71.8 bits (175), Expect = 1e-11, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 39/75 (52%) Query: 71 QFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVV 130 Q KE ++L+ + LLE +L +V+R G+ + +ARQ + H + +NGR + Sbjct: 85 QKLGVLKEDSKLEDILALKVEDLLERQLQTIVFRKGYANSMKQARQFIVHGHVSLNGRKI 144 Query: 131 NIASYQVSPNDVVSI 145 + SY V + +I Sbjct: 145 TVPSYMVLKAEEDTI 159 >UniRef50_A7IAH7 30S ribosomal protein S4P n=5 Tax=Methanomicrobiales RepID=RS4_METB6 Length = 185 Score = 71.8 bits (175), Expect = 1e-11, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 30/52 (57%) Query: 94 LEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSI 145 LE RL +VYR G + +ARQLV+H I + GR V + Y V+ + +I Sbjct: 106 LERRLQTLVYRKGLARSPKQARQLVTHGHIAIGGRRVTVPGYLVTRGEETTI 157 >UniRef50_B5SQ56 Putative ribosomal protein S4 (Fragment) n=1 Tax=Blastocystis sp. DMP/02-328 RepID=B5SQ56_9STRA Length = 922 Score = 71.4 bits (174), Expect = 2e-11, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 55/177 (31%), Gaps = 17/177 (9%) Query: 13 RREGTDLFLKSGVRAIDTKCKIEQA-PGQHGARKPRLSDYGVQLREKQKVRRIYGVLERQ 71 R +L K+ + +Q H + Y + KQ ++ Sbjct: 27 RNFKINLTFKNKKWSNFKLLTQQQPIYLCHFRKLNIKRFYYYKFNNKQFLK--------- 77 Query: 72 FRNYYKEAARLKGNTGENLLAL--LEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRV 129 Y T L +E RLD +Y+ F + A +++ I VN + Sbjct: 78 --KYLVNYKEYNFKTHIISLNFKTIERRLDYNLYKAKFVPSLFAAHFYITNGYIFVNQKC 135 Query: 130 VNIASYQVSPNDVVSIREKAKKQS---RVKAALELAEQREKPTWLEVDAGKMEGTFK 183 + ++ + ND V+I K + L E LE+D F Sbjct: 136 IKNCNFILQTNDRVTIHSKIYNICKQTLINTFLTKNETLNYIKNLEIDFTTCSFIFL 192 >UniRef50_B3T3X2 Putative S4 domain protein n=2 Tax=prokaryotic environmental samples RepID=B3T3X2_9ZZZZ Length = 230 Score = 71.0 bits (173), Expect = 2e-11, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 54/150 (36%), Gaps = 27/150 (18%) Query: 15 EGTDLFLKSGVRAIDTKCKIEQAPGQHGARK----PRLSDYGVQLREKQKVRRI------ 64 G F + + K + +H ++ ++ REK +RR Sbjct: 1 MGHPKFARPKTQTPAHPWKAARIEEEHALKEQFGLKKVGGMREIWREKSALRRHRNQAMK 60 Query: 65 ----------YGVLERQ--FRNYYKEAARLKGNTGENLLA-----LLEGRLDNVVYRMGF 107 + E+Q ++ G++ +++L +L RL +VVY G Sbjct: 61 LIGRVDSSEGHFAREKQDLVEALHRRGLIAGGSSIDDVLQITVEHMLARRLQSVVYYRGL 120 Query: 108 GATRAEARQLVSHKAIMVNGRVVNIASYQV 137 + +R ++ H I + + + + Y++ Sbjct: 121 APSMRASRNMIVHGHISIGEQRMTVPGYKI 150 >UniRef50_A8MDS5 30S ribosomal protein S4P n=6 Tax=Thermoprotei RepID=RS4_CALMQ Length = 181 Score = 71.0 bits (173), Expect = 2e-11, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 92 ALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQV--SPNDVVSIREKA 149 A+LE RL +VYR G + EARQL+ H I +NG V Y V + D + + Sbjct: 102 AVLERRLQTLVYRKGMARSIHEARQLIVHGHISINGVRVRSPGYLVPRNLEDGIGFAPTS 161 Query: 150 KKQS 153 + Sbjct: 162 RIVK 165 >UniRef50_Q18G54 30S ribosomal protein S4P n=9 Tax=Halobacteriaceae RepID=RS4_HALWD Length = 175 Score = 70.7 bits (172), Expect = 3e-11, Method: Composition-based stats. Identities = 20/47 (42%), Positives = 26/47 (55%) Query: 93 LLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSP 139 +LE RL +VYR G +T +ARQ + H+ I VNG V S V Sbjct: 102 ILERRLQTIVYRQGLASTPKQARQFIVHEHITVNGARVTRPSKMVEE 148 >UniRef50_Q12ZR5 30S ribosomal protein S4P n=2 Tax=Methanosarcinales RepID=RS4_METBU Length = 184 Score = 70.3 bits (171), Expect = 4e-11, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 32/60 (53%) Query: 87 GENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIR 146 G A+LE RL V+R+G T +ARQ ++H I ++G+ V + V+ +++ Sbjct: 99 GLQTEAILERRLQTQVHRLGLARTARQARQFITHGHIAIDGKRVTVPGMMVTREQEMNVE 158 >UniRef50_A4WM27 30S ribosomal protein S4P n=5 Tax=Thermoproteaceae RepID=RS4_PYRAR Length = 159 Score = 67.6 bits (164), Expect = 3e-10, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 26/46 (56%) Query: 92 ALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQV 137 A+LE RL +VYRMG + ARQL+ H I + GR V + V Sbjct: 102 AILERRLQTIVYRMGLAKSIYHARQLIVHGHIAIEGRRVTSPGFLV 147 >UniRef50_UPI0001699071 30S ribosomal protein S4 n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001699071 Length = 103 Score = 67.6 bits (164), Expect = 3e-10, Method: Composition-based stats. Identities = 41/64 (64%), Positives = 49/64 (76%) Query: 143 VSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFKRKPERSDLSADINEHLIVE 202 VSIREKAKKQ R++ AL LAEQ W+EVD M+G FKR P+R+DL A+INE L+VE Sbjct: 40 VSIREKAKKQVRIQGALSLAEQYGFVDWVEVDPKAMKGVFKRVPDRADLPAEINEQLVVE 99 Query: 203 LYSK 206 LYSK Sbjct: 100 LYSK 103 >UniRef50_B6YSQ1 30S ribosomal protein S4P n=12 Tax=Euryarchaeota RepID=RS4_THEON Length = 180 Score = 66.8 bits (162), Expect = 4e-10, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%) Query: 93 LLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQV--SPNDVVSIREKA 149 +L+ RL +V++ G T +ARQL+ H I VNG+++ Y V D ++ + + Sbjct: 100 VLDRRLQTIVFKKGLARTIRQARQLIVHGHIEVNGQIIRSPGYLVLKEEEDTITYSKTS 158 >UniRef50_A4YIN4 30S ribosomal protein S4P n=3 Tax=Thermoprotei RepID=RS4_METS5 Length = 180 Score = 63.3 bits (153), Expect = 4e-09, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%) Query: 99 DNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVS--PNDVVSIREKA 149 +V+R G T +ARQL+ H I V GR + Y V D + + Sbjct: 107 QTIVHRKGLARTIYQARQLIVHGHIAVGGRKITSPGYIVKRDEEDSIDFYPTS 159 >UniRef50_D2EFK3 Ribosomal protein S4 n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EFK3_9EURY Length = 176 Score = 62.6 bits (151), Expect = 8e-09, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 2/80 (2%) Query: 89 NLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVS--PNDVVSIR 146 NL ++ RL V + G + E+RQ+++H+ I V+G++++ SY V D + Sbjct: 97 NLENFMDRRLQTFVLKKGMARSIRESRQVITHRHIAVDGKIIDSPSYMVKKEEEDKIDFA 156 Query: 147 EKAKKQSRVKAALELAEQRE 166 E + S E+++ Sbjct: 157 ETSPLSSPNHPVRAKKEEKQ 176 >UniRef50_A7AXH2 Putative uncharacterized protein n=1 Tax=Babesia bovis RepID=A7AXH2_BABBO Length = 214 Score = 61.8 bits (149), Expect = 1e-08, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 52/132 (39%), Gaps = 5/132 (3%) Query: 14 REGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRIYGVLERQFR 73 + + + T + + + Y + + Q ++ IY + ++ Sbjct: 2 KINLNKIKILKKFNLYTLYGFTNKLNFYYSTTRKYISYKLV-KNIQILKTIYNLKNKRLN 60 Query: 74 NYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIA 133 NY + + L +L+ R+D ++ T RQ + H+ I++N + + Sbjct: 61 NYLE----YNIYKLIDFLKILKSRVDYILLESELFLTLNHIRQNIIHRHILLNNKTIINY 116 Query: 134 SYQVSPNDVVSI 145 SY +S ND++ + Sbjct: 117 SYIISTNDIIHL 128 >UniRef50_Q2N6H3 S4 domain protein n=1 Tax=Erythrobacter litoralis HTCC2594 RepID=Q2N6H3_ERYLH Length = 103 Score = 61.8 bits (149), Expect = 1e-08, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 2/70 (2%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRV 155 R+D V+ R+ F TR+ AR L+ + NGR V S+ V+ D++++ K V Sbjct: 1 MRIDLVLCRLRFFKTRSAARNLIEAGHLRANGRRVVQVSHPVAEGDILTV--PLGKSVVV 58 Query: 156 KAALELAEQR 165 L L E+R Sbjct: 59 IEILHLPERR 68 >UniRef50_A3TX18 S4 domain protein n=4 Tax=Rhodobacteraceae RepID=A3TX18_9RHOB Length = 130 Score = 61.0 bits (147), Expect = 2e-08, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 29/58 (50%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSR 154 RLD +++ F +R+ A LV+ + VNG S+ V P DV++ + + + Sbjct: 9 RLDKWIWQARFVKSRSLAAGLVTGGHVRVNGMRAAKPSHGVQPGDVLTFPQGDRIRVV 66 >UniRef50_A8F528 Hemolysin A n=1 Tax=Thermotoga lettingae TMO RepID=A8F528_THELT Length = 265 Score = 60.6 bits (146), Expect = 3e-08, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 33/69 (47%) Query: 94 LEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQS 153 ++ RLD +V A+R++AR L+ ++VNG++ D + + E + S Sbjct: 1 MKKRLDLIVTERKLAASRSQARDLIKLGRVVVNGKICRKPGTICFEEDEIKLCEPRQYVS 60 Query: 154 RVKAALELA 162 R LE A Sbjct: 61 RGGEKLEKA 69 >UniRef50_Q8TYA5 Predicted RNA-binding protein containing the S4 domain n=1 Tax=Methanopyrus kandleri RepID=Q8TYA5_METKA Length = 79 Score = 60.6 bits (146), Expect = 3e-08, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 28/51 (54%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIR 146 RLD + +G +R EA++LV + VNG++V + VSP D + + Sbjct: 5 RRLDAFLRDVGLAESRREAKRLVESGRVRVNGKLVRKPWWLVSPGDEIEVD 55 >UniRef50_A5P9N3 S4 domain protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P9N3_9SPHN Length = 85 Score = 60.6 bits (146), Expect = 3e-08, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 2/73 (2%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRV 155 R+D ++ + F TR+ AR+LV I NG V S ++ DV+++ + ++ Sbjct: 1 MRIDRLLCTLRFVRTRSAARKLVDQGHIRRNGERVLRPSRDIAVGDVLTL--PVGRHVKL 58 Query: 156 KAALELAEQREKP 168 L+L E+R P Sbjct: 59 IEVLQLPERRGPP 71 >UniRef50_A9A436 30S ribosomal protein S4P n=4 Tax=Thaumarchaeota RepID=RS4_NITMS Length = 201 Score = 60.3 bits (145), Expect = 4e-08, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%) Query: 93 LLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDV--VSIREKAK 150 LL RL +V + T +ARQ V H IM+ R V+I SY V+ + + ++K Sbjct: 100 LLSRRLQTIVTKKLGFKTPYQARQAVIHGHIMIGERKVDIPSYTVTVEEENSIHFAPESK 159 Query: 151 KQSRVKA 157 ++ Sbjct: 160 IPQVLEK 166 >UniRef50_P52810 40S ribosomal protein S9 n=99 Tax=Eukaryota RepID=RS9_PODAN Length = 190 Score = 59.9 bits (144), Expect = 5e-08, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 26/46 (56%) Query: 93 LLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVS 138 LE RL +VY++G + AR L+ + I V ++VN+ S+ V Sbjct: 102 FLERRLQTLVYKLGLAKSIHHARVLIRQRHIRVGKQIVNVPSFVVR 147 >UniRef50_A4RKE3 Putative uncharacterized protein n=1 Tax=Magnaporthe grisea RepID=A4RKE3_MAGGR Length = 445 Score = 59.5 bits (143), Expect = 7e-08, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 8/94 (8%) Query: 40 QHGARKPRLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNT--GENLLALLEGR 97 + + Y R KQ+ G Y + T + A +E R Sbjct: 94 EQATGRGSGKKYDPDWRAKQEAAGESGPNP------YVTNLKTNRATPYMQMTYAPMERR 147 Query: 98 LDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVN 131 LD ++R F ++ +ARQ H + VNG+ V+ Sbjct: 148 LDIAIFRALFASSARQARQFCVHGFVKVNGQPVD 181 >UniRef50_D1B2S0 Hemolysin A n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B2S0_SULD5 Length = 238 Score = 59.1 bits (142), Expect = 9e-08, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 35/59 (59%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSR 154 RLDN V+ GF +R +A +L+ ++ VNG V +S++V ND V + + ++ SR Sbjct: 1 MRLDNYVFEKGFAQSRNKASELIKEGSVWVNGNVERKSSFEVCENDKVDVEKISQYVSR 59 >UniRef50_Q6UVU2 Ribosomal protein S4 n=1 Tax=Pseudendoclonium akinetum RepID=Q6UVU2_PSEAK Length = 420 Score = 59.1 bits (142), Expect = 1e-07, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%) Query: 89 NLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIRE 147 ++ LLE RLD ++++ F + ARQ + ++VNG + S+Q P DV + + Sbjct: 363 KIVNLLESRLDVILWKNQFAGSIKSARQNLRQG-VLVNGGLQKKTSFQALPGDVFTFNK 420 >UniRef50_B7GTM9 Hemolysin A n=18 Tax=Bifidobacteriaceae RepID=B7GTM9_BIFLI Length = 276 Score = 58.7 bits (141), Expect = 1e-07, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 23/44 (52%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPN 140 RLD ++ G +RA+A++L+ + V+G + S+ V Sbjct: 33 RLDMMLVASGLVESRAKAQRLIKAGHVRVDGETITKPSFMVKAG 76 >UniRef50_P46781 40S ribosomal protein S9 n=236 Tax=Eukaryota RepID=RS9_HUMAN Length = 194 Score = 58.3 bits (140), Expect = 1e-07, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 29/58 (50%) Query: 81 RLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVS 138 +L G + LE RL V+++G + AR L+ + I V +VVNI S+ V Sbjct: 93 KLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVR 150 >UniRef50_A5VJ39 RNA-binding S4 domain protein n=13 Tax=Lactobacillus RepID=A5VJ39_LACRD Length = 261 Score = 58.3 bits (140), Expect = 2e-07, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 1/71 (1%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVK 156 RLD V+ GF +R A+QL+ H + +N ++ YQ+ +D++S+R + + + Sbjct: 185 RLDVVI-AAGFNYSRNRAKQLIEHGQVRLNWEEIDRPDYQIVVHDLISVRHGGRLRIDMT 243 Query: 157 AALELAEQREK 167 ++ Sbjct: 244 NGKTKKDKERI 254 >UniRef50_Q2NFZ4 30S ribosomal protein S4P n=5 Tax=Methanobacteriaceae RepID=RS4_METST Length = 182 Score = 58.0 bits (139), Expect = 2e-07, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 30/58 (51%) Query: 89 NLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIR 146 N+ +L RL ++V++ G T EAR V H I +NG+ +N + V D +I Sbjct: 96 NVEDILRRRLQSLVFKRGLSHTAKEARLFVVHGHITLNGKKINAPGHLVEKADEENID 153 >UniRef50_C7R3S3 Hemolysin A n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R3S3_JONDD Length = 310 Score = 57.6 bits (138), Expect = 2e-07, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 27/51 (52%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIR 146 RLD V G +R A +++S A+ VNGR + ++ V D ++++ Sbjct: 8 RRLDVTVVMRGLAPSRNRAARIISDGAVFVNGRSITKPAWPVHNADTITLK 58 >UniRef50_O15612 40S ribosomal protein S9 n=4 Tax=Entamoeba RepID=RS9_ENTHI Length = 185 Score = 57.2 bits (137), Expect = 4e-07, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 27/48 (56%) Query: 92 ALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSP 139 LLE RL +VYR GF + AR L+ K I V +VV++ S+ V Sbjct: 103 NLLERRLQTLVYRKGFAKSIHHARVLIRGKMIKVGKQVVDVPSFLVRV 150 >UniRef50_A0B9H7 RNA-binding S4 domain protein n=1 Tax=Methanosaeta thermophila PT RepID=A0B9H7_METTP Length = 238 Score = 56.8 bits (136), Expect = 4e-07, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 2/65 (3%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRV 155 RLD + +R++A L+ +MVNG V SY+V P D V I E + SR Sbjct: 3 MRLDIYLVE--IAGSRSKAVHLIKSGKVMVNGAVCRKQSYRVKPGDRVEIVEGFRYVSRG 60 Query: 156 KAALE 160 +E Sbjct: 61 GYKIE 65 >UniRef50_C8S933 RNA-binding S4 domain protein n=2 Tax=Archaeoglobaceae RepID=C8S933_FERPL Length = 208 Score = 56.8 bits (136), Expect = 5e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 35/61 (57%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRV 155 RLD + + G+ +R++A++ + + VNG+V+ S+QV ++ + + EK K + Sbjct: 1 MRLDEFLKKSGYFKSRSQAKEAIKRGFVKVNGKVITKPSFQVKGSEKIEVAEKGKPRGYY 60 Query: 156 K 156 K Sbjct: 61 K 61 >UniRef50_B2USJ4 Hemolysin n=12 Tax=Helicobacter pylori RepID=B2USJ4_HELPS Length = 235 Score = 56.8 bits (136), Expect = 5e-07, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 8/88 (9%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRV 155 RLD ++ +R +A+ LV ++VN VV+ S+ V D + + Sbjct: 1 MRLDYALFNQHLVNSREKAKALVLKNQVLVNKMVVSKPSFIVKEGDKIEL--------IA 52 Query: 156 KAALELAEQREKPTWLEVDAGKMEGTFK 183 + +LE + Sbjct: 53 TNLFVSRAGEKLAAFLETHFVDFKEKVV 80 >UniRef50_A8AW22 S4 domain n=3 Tax=Streptococcus RepID=A8AW22_STRGC Length = 275 Score = 56.4 bits (135), Expect = 6e-07, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 60/136 (44%), Gaps = 23/136 (16%) Query: 51 YGVQLREKQKVRRIYGVLERQFRNYY-----KEAA---RLKGNTGENLLALLE------- 95 +G L EK + + +++++F ++ K A +LK E LL + E Sbjct: 136 FGDILVEKDRAQV---LVDKRFTQFFIDHISKIAKTPVKLKEVGFERLLRVQEAQVSKEI 192 Query: 96 ----GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKK 151 RLD ++ F +R +A QL+ K + VN +++ SY V ND++S+R + Sbjct: 193 LASSMRLDKLI-ASSFKLSRNDASQLIFGKHVKVNYSIIDNPSYLVELNDLISVRRFGRF 251 Query: 152 QSRVKAALELAEQREK 167 + + + + Sbjct: 252 KIVKENGFSKNGKHKL 267 >UniRef50_B1GZX8 Putative rRNA methylase n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GZX8_UNCTG Length = 250 Score = 55.3 bits (132), Expect = 1e-06, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 28/65 (43%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVK 156 RLD +++ GF TR +A+ + I VN ++ V D + +R SR Sbjct: 9 RLDVLLFEKGFAETRTKAQAFIMSGNIFVNNQIQYRPGTLVGKEDSIEVRNANPYVSRGG 68 Query: 157 AALEL 161 LE Sbjct: 69 LKLES 73 >UniRef50_A3VSN6 Hemolysin HlyA n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VSN6_9PROT Length = 243 Score = 54.9 bits (131), Expect = 2e-06, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 25/54 (46%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKA 149 RLD+ + G +R A++++ + VNG V A + P D V R + Sbjct: 1 MRLDSYLVEAGHVRSRERAKKVIGDGYVWVNGVQVRKAGRSLQPTDRVEFRGED 54 >UniRef50_C7N702 Hemolysin A n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N702_SLAHD Length = 267 Score = 54.9 bits (131), Expect = 2e-06, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 26/51 (50%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIR 146 RLD + G +RA+A+ ++ + VNGR V AS V D + ++ Sbjct: 1 MRLDVALVERGLEPSRAKAKASIAAGLVFVNGRNVTKASLGVDDGDAIEVQ 51 >UniRef50_Q2GC52 RNA-binding S4 n=3 Tax=Sphingomonadaceae RepID=Q2GC52_NOVAD Length = 96 Score = 54.9 bits (131), Expect = 2e-06, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRV 155 R+D ++ F TR A+ V I +NGR + S V DV+ + + + V Sbjct: 1 MRIDKFLWFTRFAGTRNLAQGWVEDGHIRLNGRRIERCSADVRLGDVLVL--PMRSRVTV 58 Query: 156 KAALELAEQR 165 L L +R Sbjct: 59 IEVLALPARR 68 >UniRef50_A6UE60 RNA-binding S4 domain protein n=12 Tax=Rhizobiales RepID=A6UE60_SINMW Length = 137 Score = 53.3 bits (127), Expect = 5e-06, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 28/58 (48%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSR 154 RLD ++ +R+ A++ + ++VNG+ +S Q+ D++ + + + Sbjct: 14 RLDKWLFFARLIKSRSLAQKAIEAGHVVVNGKRETQSSAQIKAGDMLEVSLERRDLVL 71 >UniRef50_D0MJ49 Pseudouridine synthase n=2 Tax=Bacteria RepID=D0MJ49_RHOM4 Length = 355 Score = 53.3 bits (127), Expect = 5e-06, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 28/50 (56%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIR 146 RLD + R A+R + ++ + + VNG VV +Y V P DV+++R Sbjct: 21 RLDAYLARFLAQASRTKIQRGIREGRVTVNGVVVQKPAYTVQPGDVITLR 70 >UniRef50_C9M7F5 Hemolysin A n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M7F5_9BACT Length = 269 Score = 52.6 bits (125), Expect = 8e-06, Method: Composition-based stats. Identities = 18/43 (41%), Positives = 24/43 (55%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSP 139 RLD + R F +T EAR L+S ++V GR V+ QV P Sbjct: 9 RLDRRLVREHFASTDEEARLLISSGLVLVEGRAVDSPDCQVKP 51 >UniRef50_Q28M35 RNA-binding S4 n=1 Tax=Jannaschia sp. CCS1 RepID=Q28M35_JANSC Length = 108 Score = 52.2 bits (124), Expect = 1e-05, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 30/63 (47%) Query: 99 DNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAA 158 D +++ F TR+ A + VS + VN + AS Q+SP DV++ + + A Sbjct: 2 DKWLWQARFFKTRSLAARQVSAGHVRVNATKITKASTQISPGDVLTFPQGNTIRVVKIDA 61 Query: 159 LEL 161 L Sbjct: 62 LAK 64 >UniRef50_A4WST9 RNA-binding S4 domain protein n=5 Tax=Alphaproteobacteria RepID=A4WST9_RHOS5 Length = 100 Score = 52.2 bits (124), Expect = 1e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSR 154 RLD + + F TRA A LV + +NG+ V + V D+++ + + + Sbjct: 10 RLDKWLVQARFFKTRALASALVEAGRVRLNGQHVAKPAQPVGEGDMLTFPQGGRIRLI 67 >UniRef50_Q3LWD1 Ribosomal protein S9 n=1 Tax=Bigelowiella natans RepID=Q3LWD1_BIGNA Length = 180 Score = 51.8 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 32/58 (55%) Query: 88 ENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSI 145 +L ++L RL VV ++ T EAR L+ HK I V ++VN S+ V ++ + I Sbjct: 101 IDLRSILSRRLQTVVKQLKLSKTIHEARILIMHKHIQVKNQIVNKPSFLVRKDNEIFI 158 >UniRef50_B0XDY0 U3 small nucleolar ribonucleoprotein protein IMP3 n=8 Tax=Coelomata RepID=B0XDY0_CULQU Length = 181 Score = 51.4 bits (122), Expect = 2e-05, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 19/45 (42%) Query: 93 LLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQV 137 RL V+ R ++A QL+ H + V VV ++ V Sbjct: 105 FCRRRLPVVLLRSKMAENISQATQLIEHGHVRVGAEVVKDPAFLV 149 >UniRef50_D2LJI2 RNA-binding S4 domain protein n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LJI2_RHOVA Length = 105 Score = 50.6 bits (120), Expect = 3e-05, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 26/50 (52%) Query: 95 EGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVS 144 E RLD ++ F +R+ A +L+ I VN + V A+ + DV++ Sbjct: 6 EQRLDKWLWHARFVKSRSLAAKLIEEGCIRVNRQRVVKAATCIKCGDVLT 55 >UniRef50_B4U7M2 Hemolysin A n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U7M2_HYDS0 Length = 246 Score = 50.6 bits (120), Expect = 3e-05, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 33/69 (47%) Query: 94 LEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQS 153 ++ RLD ++ G ++R +A+ + + VNG+ V A V D + + + K S Sbjct: 1 MKKRLDLLLVEKGLVSSREKAQAFIMEGRVFVNGKAVLKAGTLVQEEDGIELLGEEKFVS 60 Query: 154 RVKAALELA 162 R LE A Sbjct: 61 RAGYKLENA 69 >UniRef50_C5RAG0 Ribosomal protein S4e n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RAG0_WEIPA Length = 261 Score = 50.6 bits (120), Expect = 3e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 1/71 (1%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVK 156 RLD++V G+ +R A+Q++ H + VN +N Y ++ ND+VS+R+ + + Sbjct: 185 RLDSIV-ANGYNISRNHAKQMIEHDLVRVNWTDINKPDYVLAVNDLVSVRKYGRLKIDEL 243 Query: 157 AALELAEQREK 167 L ++ Sbjct: 244 NGLTKKDKWRI 254 >UniRef50_C6QEU6 RNA-binding S4 domain protein n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QEU6_9RHIZ Length = 134 Score = 50.6 bits (120), Expect = 3e-05, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 25/49 (51%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSI 145 R+D ++ +R A+ L+S + +N ++ S V P DV+++ Sbjct: 11 RVDQWLWFARITKSRTLAQDLISRGKVRLNREKIDKPSTLVKPGDVITL 59 >UniRef50_A0LDZ0 RNA-binding S4 domain protein n=2 Tax=Proteobacteria RepID=A0LDZ0_MAGSM Length = 130 Score = 50.6 bits (120), Expect = 4e-05, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 2/73 (2%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVK 156 R+D ++ F TRA A V+ + +NG+ + AS+QV D + I + + + V Sbjct: 10 RIDKWLWAARFFKTRALATDAVNGGHVHLNGQRI-KASHQVKVGDRLEITKGPVQFALVI 68 Query: 157 AALELAEQREKPT 169 L ++ P Sbjct: 69 EGLHD-KRGPAPA 80 >UniRef50_Q466Z9 FtsJ-like methyltransferase n=6 Tax=Euryarchaeota RepID=Q466Z9_METBF Length = 236 Score = 50.2 bits (119), Expect = 4e-05, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 28/52 (53%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIRE 147 RLD + MG +R A++ + + VNG V+ AS VS +D++ + E Sbjct: 1 MRLDAYIVDMGHFKSRGRAKKAILAGNVKVNGAVITKASRDVSTDDIIEVTE 52 >UniRef50_Q06803 Hemolysin A n=3 Tax=Brachyspira RepID=HLYA_TREHY Length = 240 Score = 50.2 bits (119), Expect = 4e-05, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 34/67 (50%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRV 155 RLD V+ G+ +R++A+ ++ + VNG V ++++ D + + + K SR Sbjct: 1 MRLDEYVHSEGYTESRSKAQDIILAGCVFVNGVKVTSKAHKIKDTDNIEVVQNIKYVSRA 60 Query: 156 KAALELA 162 LE A Sbjct: 61 GEKLEKA 67 >UniRef50_C7MC95 Predicted rRNA methylase n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MC95_BRAFD Length = 281 Score = 50.2 bits (119), Expect = 5e-05, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 20/44 (45%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPN 140 RLD + G +R+ AR+++ +GR V S + P Sbjct: 5 RLDVALLAAGLARSRSHARRIIEEGRARADGRAVTKPSTPIPPG 48 >UniRef50_Q0G1N8 RNA-binding S4 n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0G1N8_9RHIZ Length = 161 Score = 49.9 bits (118), Expect = 5e-05, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 2/89 (2%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVK 156 R+D + TR+ A+QLV K + +N ++ + V DV++I + V Sbjct: 23 RIDKWLVFARVVKTRSIAQQLVEAKKVRLNKEKIDNPARNVRVGDVLTI--SYSSRVHVF 80 Query: 157 AALELAEQREKPTWLEVDAGKMEGTFKRK 185 L A +R P + + Sbjct: 81 QVLGFAGRRGSPGDAQALYEDLNAPVVEV 109 >UniRef50_Q1GPH7 RNA-binding S4 n=1 Tax=Sphingopyxis alaskensis RepID=Q1GPH7_SPHAL Length = 116 Score = 49.5 bits (117), Expect = 6e-05, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 26/44 (59%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPN 140 RLD +++ + F +R+ A+ +V+ I ++GR V+ +S V Sbjct: 11 RLDKLLWFLRFARSRSIAQAMVAAGHIRLDGRRVSRSSCAVQAG 54 >UniRef50_B8ERF0 RNA-binding S4 domain protein n=9 Tax=Rhizobiales RepID=B8ERF0_METSB Length = 104 Score = 49.5 bits (117), Expect = 6e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 28/58 (48%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSR 154 RLD ++ TR A +LV + +N R ++ + V+ DV+++ + + + Sbjct: 6 RLDKWLWFARVTKTRTLAARLVLDGHVRLNARRIDAPAKPVAAGDVLTVALERQVRVL 63 >UniRef50_Q3SVL4 RNA-binding S4 n=16 Tax=Rhizobiales RepID=Q3SVL4_NITWN Length = 97 Score = 49.5 bits (117), Expect = 7e-05, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 1/65 (1%) Query: 91 LALLEG-RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKA 149 + +LE RLD ++ R +A LV + VNG + + DV++IR Sbjct: 1 MDVLERQRLDKWLWHARVVRARTQAASLVEAGRVRVNGLRQTSPGHPLRIADVLTIRLDR 60 Query: 150 KKQSR 154 + Sbjct: 61 GIRIL 65 >UniRef50_B1LWX7 RNA-binding S4 domain protein n=2 Tax=Alphaproteobacteria RepID=B1LWX7_METRJ Length = 102 Score = 49.5 bits (117), Expect = 8e-05, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 24/49 (48%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSI 145 RLD ++ F TR+ A +L S + VNG + + DVV++ Sbjct: 7 RLDKWLWFARFARTRSLAARLASDGFVRVNGSRAENPAKAIGVGDVVTV 55 >UniRef50_D2RHD3 RNA-binding S4 domain protein n=1 Tax=Archaeoglobus profundus DSM 5631 RepID=D2RHD3_ARCPR Length = 209 Score = 49.1 bits (116), Expect = 9e-05, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 27/42 (64%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQV 137 RLD ++ G+ ++R +A++ + + ++VNG+VV SY V Sbjct: 1 MRLDRLLVIKGYFSSRQKAKEAIRRRFVIVNGKVVTKPSYDV 42 >UniRef50_B1I3J7 Hemolysin A n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I3J7_DESAP Length = 274 Score = 49.1 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 25/50 (50%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIR 146 RLD +++ G +R AR + + VNG V+ ++ P+ + +R Sbjct: 6 RLDILLHSRGCFPSRERARSAIMAGVVFVNGVRVDKPGTKLDPHADIEVR 55 >UniRef50_B6IUH9 Heat shock protein, putative n=1 Tax=Rhodospirillum centenum SW RepID=B6IUH9_RHOCS Length = 115 Score = 49.1 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 26/49 (53%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSI 145 RLD ++ F TR A +L + AI + G V A ++V P DV++ Sbjct: 24 RLDKWLWYARFVKTRGLAARLCASGAIRIGGAHVTKAHHRVKPGDVLTF 72 >UniRef50_B0MQ24 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MQ24_9FIRM Length = 241 Score = 48.7 bits (115), Expect = 1e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 29/58 (50%) Query: 94 LEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKK 151 ++ RLD + +R+ A L+ ++ VNGR+ AS+ V ND + I + K Sbjct: 1 MQKRLDVYLSENNTVKSRSLAASLIKQGSVEVNGRICTKASFAVDENDNIRIIGEMPK 58 >UniRef50_Q7M9Y6 PUTATIVE HEMOLYSIN n=1 Tax=Wolinella succinogenes RepID=Q7M9Y6_WOLSU Length = 236 Score = 48.7 bits (115), Expect = 1e-04, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 2/81 (2%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRV 155 RLD + + +R +AR L+ I+V+G+ + S +V VSI + + Sbjct: 1 MRLDAYLAKESLVPSREKARALILEGQILVDGKAASKPSMEVMEG--VSIELLSPSRYVG 58 Query: 156 KAALELAEQREKPTWLEVDAG 176 +AAL+L E + + Sbjct: 59 RAALKLQGFLESHPEISLKGE 79 >UniRef50_Q03W41 Cell division protein, S4-like domain n=3 Tax=Leuconostoc RepID=Q03W41_LEUMM Length = 265 Score = 48.3 bits (114), Expect = 1e-04, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 1/80 (1%) Query: 88 ENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIRE 147 EN L L RLD V+ GF +R+ A++L+ + VN + +++ DV+S+R+ Sbjct: 180 ENFLLLSSLRLDTVI-SAGFDLSRSGAKKLIEENQVRVNWSEIAKPDVELAIGDVISVRK 238 Query: 148 KAKKQSRVKAALELAEQREK 167 + Q ++ + + + Sbjct: 239 HGRVQIKLLDGISKKGKIKS 258 >UniRef50_B8DBQ5 S4 domain protein n=14 Tax=Listeria RepID=B8DBQ5_LISMH Length = 259 Score = 48.3 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIR 146 RLD ++ +R +A+QLV+ + VN + V ++ DV+S R Sbjct: 183 MRLDVIISNAHHI-SRQKAKQLVTAGLVKVNWKTVENPDFECEEEDVLSAR 232 >UniRef50_C9KK38 Hemolysin A n=2 Tax=Clostridiales RepID=C9KK38_9FIRM Length = 268 Score = 48.3 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 26/49 (53%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSI 145 RLD ++ G +R A++++ ++V+G+ ++ A V P + + Sbjct: 5 RLDILLVERGLAGSRERAKRMIMAGEVLVDGQKIDKAGTTVKPEAEIRL 53 >UniRef50_B9K8Q2 Hemolysin A n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9K8Q2_THENN Length = 267 Score = 48.3 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 35/70 (50%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRV 155 RLD +V G +R +A+ L+ I+VNG V AS V + + + E+ + SR Sbjct: 5 KRLDLLVLERGLVESREKAKALILAGKILVNGEKVTKASKLVPVDSHLEVLEEPRYVSRG 64 Query: 156 KAALELAEQR 165 LE A +R Sbjct: 65 GYKLESAFER 74 >UniRef50_B9JSK8 Hemolysin A n=20 Tax=Alphaproteobacteria RepID=B9JSK8_AGRVS Length = 263 Score = 47.9 bits (113), Expect = 2e-04, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 5/99 (5%) Query: 92 ALLE-GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIR---E 147 LE RLD ++ + A+R+ AR V + VNGR V S SP+ + I + Sbjct: 8 QSLEPQRLDQLLVALNLFASRSRARDAVQRGGVKVNGRTVTKPSLTFSPDVTIEIDDPAQ 67 Query: 148 KAKKQSRVKAALELAEQREKPT-WLEVDAGKMEGTFKRK 185 ++ +K L + P+ + +D G G F Sbjct: 68 DYVSRAALKLVAGLDHFKLDPSGHICLDVGASTGGFTEV 106 >UniRef50_D0LUB8 Hemolysin A n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LUB8_HALO1 Length = 282 Score = 47.9 bits (113), Expect = 2e-04, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 29/53 (54%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKA 149 RLD ++ R G A+R AR L+ + V G +V+ A +V+ +++R K Sbjct: 5 RLDTMLVRRGLVASRERARALILAGEVEVGGIIVSKAGTRVAEEAEIALRSKD 57 >UniRef50_A3WG15 Putative heat shock protein 15 (HSP15) n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WG15_9SPHN Length = 92 Score = 47.9 bits (113), Expect = 2e-04, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 36/74 (48%), Gaps = 2/74 (2%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRV 155 RLD ++ + F TR+ A+ ++ + +N + S +V DV+++ + + V Sbjct: 11 MRLDRLLVFLRFARTRSIAKAMILSGRMRLNSTRITKISCEVGVGDVLTLA--YRGEICV 68 Query: 156 KAALELAEQREKPT 169 +L ++R P+ Sbjct: 69 ARIEKLPDRRLSPS 82 >UniRef50_UPI0001C41E03 rRNA methylase n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41E03 Length = 264 Score = 47.9 bits (113), Expect = 2e-04, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 32/67 (47%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVK 156 RLD + A+R ++++++ K + VN +++ ASY V D V I + + Sbjct: 4 RLDKYLVNNNLIASRTKSKEMIKSKNVKVNDKIITKASYTVRDGDKVEIINDESLRYVSR 63 Query: 157 AALELAE 163 L+L Sbjct: 64 GGLKLEG 70 >UniRef50_D0LZ35 RNA-binding S4 domain protein n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LZ35_HALO1 Length = 167 Score = 47.6 bits (112), Expect = 2e-04, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 3/73 (4%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVK 156 RLD ++ F TR+ A Q V+ + +NG V + V DV+ IR+ + Sbjct: 42 RLDKWLWAARFFKTRSLAAQEVTGGKVQLNGDHV-KPAKPVKVGDVLRIRKGMFEHEI-- 98 Query: 157 AALELAEQREKPT 169 ++L +R P Sbjct: 99 TVIKLGARRGPPA 111 >UniRef50_C7NHB2 Predicted rRNA methylase n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NHB2_KYTSD Length = 281 Score = 47.6 bits (112), Expect = 2e-04, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRV 155 RLD V + G +R A+ L+ ++V G V S V P + +S+++ A+ + Sbjct: 1 MRLDKAVVQRGLTRSRTRAQGLIRQGQVLVEGEPVTKGSVDVDP-ESISLKDGAQTAADE 59 Query: 156 KAALELAEQREKPTWLEV 173 + + +R W EV Sbjct: 60 VSRAQRKLERALELWPEV 77 >UniRef50_Q7UUI8 Pseudouridine synthase n=1 Tax=Rhodopirellula baltica RepID=Q7UUI8_RHOBA Length = 321 Score = 47.6 bits (112), Expect = 3e-04, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 95 EGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIR 146 EGR+D +V R +R++AR ++ H +M+NG V P D+V++R Sbjct: 15 EGRVDIIV-RELSETSRSQARGMIDHGCVMINGSPCKSVGTTVKPGDLVAVR 65 >UniRef50_A5G345 RNA-binding S4 domain protein n=2 Tax=Acetobacteraceae RepID=A5G345_ACICJ Length = 98 Score = 47.6 bits (112), Expect = 3e-04, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 26/49 (53%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSI 145 RLD ++ F TR A +LV+ + +N ++ ++ P DV+++ Sbjct: 16 RLDKFLFHARFVKTRGVAARLVAAGGVRINRQITEKPHARLRPGDVLTL 64 >UniRef50_Q03QI1 Cell division protein, S4-like domain n=1 Tax=Lactobacillus brevis ATCC 367 RepID=Q03QI1_LACBA Length = 259 Score = 47.6 bits (112), Expect = 3e-04, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIR 146 RLDN+V GF +R A++L+ + +N Y++ D+VS+R Sbjct: 183 RLDNIVG-TGFHLSRHRAKELIEAGHVRLNWAETQKPDYELDVADIVSVR 231 >UniRef50_Q5WFI1 Putative uncharacterized protein n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WFI1_BACSK Length = 253 Score = 47.2 bits (111), Expect = 3e-04, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVK 156 RLD ++ +G +RA+A L+ + VN +VV S++V+ D +S+R + + + Sbjct: 178 RLDALL-SALYGLSRAKAADLIGKGLVKVNWKVVEHPSFRVAIGDDLSVRGAGRAKVLKQ 236 Query: 157 AALELAEQREK 167 + ++ Sbjct: 237 EGVTKKDKYRL 247 >UniRef50_Q6MUD3 Hemolysin A n=1 Tax=Mycoplasma mycoides subsp. mycoides SC RepID=Q6MUD3_MYCMS Length = 149 Score = 47.2 bits (111), Expect = 3e-04, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 2/68 (2%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVK 156 RLD +Y+ +R +A++ + +K + VN + S+ V ND++ IR + K V Sbjct: 4 RLDEYIYKNNLTQSRNKAKEHILNKEVYVNNIAIMKPSFLVDSNDLIEIR--STKLEYVS 61 Query: 157 AALELAEQ 164 A E ++ Sbjct: 62 RAYEKLKK 69 >UniRef50_B7XIT4 SSU ribosomal protein S4P n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XIT4_ENTBH Length = 185 Score = 47.2 bits (111), Expect = 3e-04, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 2/58 (3%) Query: 94 LEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDV--VSIREKA 149 L+ RL ++V + G AR L++ K I + G VVN V + + I + Sbjct: 111 LDRRLQSLVCKSGLARNINHARSLITQKQITIKGNVVNKPGMMVRSENEGYIEINPNS 168 >UniRef50_B7CAM4 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAM4_9FIRM Length = 243 Score = 47.2 bits (111), Expect = 4e-04, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSI 145 RLD + + ++RA+A+ ++ I VNG+V+ ASY VS D + + Sbjct: 5 RLDKALLKT--ISSRAKAQDMIKEGKISVNGKVITKASYLVSDEDDIVV 51 >UniRef50_C0VZ81 Hemolysin A n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0VZ81_9ACTO Length = 306 Score = 46.8 bits (110), Expect = 4e-04, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 25/51 (49%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIR 146 R+D + R +R +A++++ + ++G VV + Q+ P + + Sbjct: 5 RRIDAELVRRKLAPSRTKAQEMIQAGYVKLDGEVVYKPARQMDPAQAIVVD 55 >UniRef50_D1CG17 Hemolysin A n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CG17_THET1 Length = 277 Score = 46.8 bits (110), Expect = 4e-04, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 27/51 (52%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIRE 147 RLD ++ +G ++R +A+ L+S + VNG + +V V ++E Sbjct: 11 RLDKLMVELGLASSREKAQALISSGLVTVNGEKARSSDQRVRRGTKVIVKE 61 >UniRef50_B1CBW0 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CBW0_9FIRM Length = 247 Score = 46.8 bits (110), Expect = 5e-04, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 1/75 (1%) Query: 76 YKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASY 135 EA+ ++ E + + RLD V+ + F +R EA V + +N V+ + Sbjct: 151 INEASVIEPKFKELNIIVPSMRLDAVIGNI-FKLSRNEANMFVKGGKVKINHNQVSKPAM 209 Query: 136 QVSPNDVVSIREKAK 150 V D++S+R K + Sbjct: 210 TVKVGDMISVRTKGR 224 >UniRef50_C5CGS7 Hemolysin A n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CGS7_KOSOT Length = 268 Score = 46.8 bits (110), Expect = 5e-04, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 2/74 (2%) Query: 94 LEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQS 153 L+ RLD ++ F ++R+ A ++ + +NG++V +V P D + I K Sbjct: 3 LKLRLDELLVARNFFSSRSRASDIIKQGKVSINGKIVKKPGKKV-PLD-IKIEINDLKDY 60 Query: 154 RVKAALELAEQREK 167 + L+L + + Sbjct: 61 VGRGYLKLEKALKV 74 >UniRef50_C0QTE7 Hemolysin A n=4 Tax=Hydrogenothermaceae RepID=C0QTE7_PERMH Length = 272 Score = 46.4 bits (109), Expect = 6e-04, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 5/81 (6%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVK 156 R+D ++ G +R +A++L+ + VN + V+ ++ + + ++EK K SR Sbjct: 6 RIDKLLVERGLVESREKAQRLIMAGCVFVNDQRVDKPGTKIPVDANIFLKEKEKYVSRGG 65 Query: 157 AALELAEQREKPTWLEVDAGK 177 LE + + + Sbjct: 66 YKLEKG-----IEYFDFNPEN 81 >UniRef50_B5YE07 Hemolysin A n=2 Tax=Dictyoglomus RepID=B5YE07_DICT6 Length = 271 Score = 46.4 bits (109), Expect = 6e-04, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 33/66 (50%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVK 156 RLD ++ + GF +R +A+ + + VNG +V ++ + ++ I+E S+ Sbjct: 6 RLDVLLVKRGFFESREKAKAAIIAGVVKVNGNIVTKPDLKIPVDSLIEIKETIPYVSKGG 65 Query: 157 AALELA 162 L+ A Sbjct: 66 FKLKKA 71 >UniRef50_B9LA28 Hemolysin A n=7 Tax=Epsilonproteobacteria RepID=B9LA28_NAUPA Length = 236 Score = 46.4 bits (109), Expect = 6e-04, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 32/66 (48%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRV 155 RLD + + +R +A++++ + VN +++ S++++ D V + + SR Sbjct: 1 MRLDQYLVTNEYTFSRNKAQEIIKSGYVKVNDKIIKKPSFKIAETDSVEVLQNDGYVSRA 60 Query: 156 KAALEL 161 L+ Sbjct: 61 AYKLKN 66 >UniRef50_A4XKR0 RNA-binding S4 domain protein n=2 Tax=Clostridia RepID=A4XKR0_CALS8 Length = 277 Score = 46.4 bits (109), Expect = 6e-04, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 3/72 (4%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRV 155 R+D +V GFG +R +A LV + VN ++ SY+V D++S+R + + V Sbjct: 201 MRVDAIVSH-GFGISREDASDLVRQFKVAVNWVYIDKPSYEVKEGDLISVRHHGRLK--V 257 Query: 156 KAALELAEQREK 167 + L ++ Sbjct: 258 EKVLTTTKKGRI 269 >UniRef50_D0L0H9 RNA-binding S4 domain protein n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L0H9_HALNC Length = 140 Score = 46.4 bits (109), Expect = 7e-04, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 2/74 (2%) Query: 78 EAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQV 137 A T + L E R+D ++ F TR+ A + + +NG+ + V Sbjct: 1 MANSSTNKTQQTELK--EQRVDTWLWAARFFKTRSLASTAIEGGKVAINGQPCKKSGKAV 58 Query: 138 SPNDVVSIREKAKK 151 D +SI K Sbjct: 59 RIGDELSIERGETK 72 >UniRef50_B1XPC6 Hemolysin A n=50 Tax=cellular organisms RepID=B1XPC6_SYNP2 Length = 285 Score = 46.4 bits (109), Expect = 7e-04, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 2/67 (2%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDV-VSIREKAKKQSRV 155 RLD ++ +R +A++++ + V ++V+ V P DV + ++ K SR Sbjct: 5 RLDLLLVERKLCESRQQAQRVIRAGEVKVKQQIVDKPGTLV-PADVDIEVQAKPPFVSRG 63 Query: 156 KAALELA 162 L A Sbjct: 64 GEKLAKA 70 >UniRef50_C3XLQ2 Hemolysin A n=1 Tax=Helicobacter winghamensis ATCC BAA-430 RepID=C3XLQ2_9HELI Length = 247 Score = 46.4 bits (109), Expect = 7e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVK 156 RLD ++ ++R +A L+ + VNG ++Y + D ++ E SR Sbjct: 10 RLDVACVKLRIASSRNQAHALIKKGKVCVNGIPCAKSAYVLGLKDKITKLESKIFVSRAG 69 Query: 157 AALE 160 L+ Sbjct: 70 EKLD 73 >UniRef50_UPI0001BC329C RNA-binding S4 domain-containing protein n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC329C Length = 250 Score = 46.0 bits (108), Expect = 7e-04, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIR 146 RLD V+ +GF +R+ + + VNGR++ +Y + D++S+ Sbjct: 175 RLDAVI-ALGFNGSRSHITSYIIDGKVSVNGRIITSNAYNLKAGDIISVH 223 >UniRef50_B2KAR0 Hemolysin A n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KAR0_ELUMP Length = 258 Score = 46.0 bits (108), Expect = 7e-04, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 30/53 (56%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKA 149 RLD + GF +R A+ + ++VNG V A ++ P D+++++EK+ Sbjct: 10 RLDMELIAQGFFKSRTRAQASIMAGEVLVNGTVEYGADRKIKPEDIITLKEKS 62 >UniRef50_Q2JUA0 Hemolysin A n=8 Tax=Cyanobacteria RepID=Q2JUA0_SYNJA Length = 275 Score = 46.0 bits (108), Expect = 7e-04, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPND-VVSIREKAKKQSRV 155 RLD + G+ ++R +A++ + + +NG A VS D VV I+ K+ SR Sbjct: 6 RLDTWLVERGYFSSRQQAQRAILAGEVFLNGVRAEKAGTWVS-GDPVVHIQAKSAFVSRG 64 Query: 156 KAALE 160 L+ Sbjct: 65 GEKLQ 69 >UniRef50_A1B330 RNA-binding S4 domain protein n=2 Tax=Alphaproteobacteria RepID=A1B330_PARDP Length = 89 Score = 46.0 bits (108), Expect = 8e-04, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 21/49 (42%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSI 145 RLD ++ TR A + I VNG+ + + V D V++ Sbjct: 10 RLDRWLHHARLFKTRTLAADAIGAGGIRVNGQPCSKPAQAVRGGDTVTV 58 >UniRef50_Q8SRW6 40S ribosomal protein S9 n=2 Tax=Apansporoblastina RepID=RS9_ENCCU Length = 184 Score = 46.0 bits (108), Expect = 8e-04, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 22/46 (47%) Query: 94 LEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSP 139 LE RL V+ G + AR L+ + I + ++V++ + V Sbjct: 110 LERRLQFRVFAAGLAKSVHHARLLIGGRCISIKDQIVDVPGFMVRA 155 >UniRef50_A0QXX1 Heat shock protein 15 n=18 Tax=Actinomycetales RepID=A0QXX1_MYCS2 Length = 127 Score = 46.0 bits (108), Expect = 8e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQ 152 R+D ++ + TR +A + VN R V S V+P D V R + + Sbjct: 10 TRIDRWLWAVRLTKTRPDAAAACRGGHVRVNDR-VAKPSTTVAPGDEVRARLGDRTR 65 >UniRef50_D1BIF7 Hemolysin A n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BIF7_SANKS Length = 318 Score = 46.0 bits (108), Expect = 8e-04, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 26/52 (50%) Query: 95 EGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIR 146 E RLD + R G +R +A LV A+ V VV AS V+ + +++ Sbjct: 32 EQRLDAELVRRGLARSRGQAVALVKSGAVTVGSEVVRRASTVVAASTEITVE 83 >UniRef50_B2IVN0 RNA-binding S4 domain protein n=11 Tax=cellular organisms RepID=B2IVN0_NOSP7 Length = 259 Score = 46.0 bits (108), Expect = 8e-04, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 6/75 (8%) Query: 76 YKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASY 135 +E + + T E L RLD + GFG +R++ + + VN + V AS Sbjct: 169 VREPKKKELTTVEASL-----RLDAI-ASAGFGMSRSKMVDFIDAGDVRVNWKEVTQASS 222 Query: 136 QVSPNDVVSIREKAK 150 QV D+++IR K + Sbjct: 223 QVKSGDLIAIRSKGR 237 >UniRef50_C1C8Q1 YlmH protein n=28 Tax=Streptococcus RepID=C1C8Q1_STRP7 Length = 261 Score = 46.0 bits (108), Expect = 9e-04, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 8/103 (7%) Query: 52 GVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEG-------RLDNVVYR 104 + +Q + L++ R R + L E RLD ++ Sbjct: 132 AQIMINQQFLLLFQDGLKKIGRIPVSLEERPFTEKIDKLEQYRELDLSVSSFRLDVLLSN 191 Query: 105 MGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIRE 147 + +R +A QL+ K + VN VV+ + Y V D++S+R+ Sbjct: 192 V-LKLSRNQANQLIEKKLVQVNYHVVDKSDYTVQVGDLISVRK 233 >UniRef50_A6LLJ5 Hemolysin A n=3 Tax=Bacteria RepID=A6LLJ5_THEM4 Length = 264 Score = 45.6 bits (107), Expect = 0.001, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 35/69 (50%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVK 156 R+D ++ + G +R +A++L+ ++VN V+ V N + I++K K SR Sbjct: 4 RIDLLLVKKGLVESREKAKRLIMSGNVIVNEERVDKVGKLVDINATIRIKQKEKYVSRGG 63 Query: 157 AALELAEQR 165 LE A + Sbjct: 64 YKLEGAHKS 72 >UniRef50_B4RLH8 Ribosome-associated heat shock protein Hsp15 n=27 Tax=Neisseriaceae RepID=B4RLH8_NEIG2 Length = 133 Score = 45.6 bits (107), Expect = 0.001, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 2/74 (2%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRV 155 RLD ++ F TR+ A++ + + VNG V S + D++ + + Sbjct: 10 MRLDKWLWAARFFKTRSLAQKHIELGRVQVNGSKVKN-SKTIDIGDIIDLTLNSLPHKIK 68 Query: 156 KAALELAEQREKPT 169 L ++R P Sbjct: 69 VKGLN-HQRRPAPE 81 >UniRef50_Q2ST62 Hemolysin A n=3 Tax=Mollicutes RepID=Q2ST62_MYCCT Length = 269 Score = 45.6 bits (107), Expect = 0.001, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 2/68 (2%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKA-IMVNGRVVNIASYQVSPNDVVSIRE-KAKKQSR 154 RLD +Y++ +R++A++ +++K + VN + S+ V NDV+ IR K K SR Sbjct: 4 RLDEYIYKINLTQSRSKAKEHITNKKDVYVNNINIIKPSFLVDNNDVIEIRSTKLKYVSR 63 Query: 155 VKAALELA 162 LE A Sbjct: 64 AYEKLEKA 71 >UniRef50_B5JS43 RNA-binding S4 domain protein n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JS43_9GAMM Length = 134 Score = 45.6 bits (107), Expect = 0.001, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVK 156 RLD ++ F TR+ A +S + +N + + + D V IR+ + + V Sbjct: 11 RLDKWLWAARFYKTRSLATAAISGGHVHLNSERI-KPAKTLKCGDEVRIRKGQMEITIVV 69 Query: 157 AALE 160 A+ Sbjct: 70 EAIS 73 >UniRef50_A5IKF7 Pseudouridine synthase n=5 Tax=Thermotogaceae RepID=A5IKF7_THEP1 Length = 239 Score = 45.6 bits (107), Expect = 0.001, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKK 151 RLD + G TR E ++L+ + VNGRVV + VS NDVV + + Sbjct: 1 MRLDRYLSNSG-VGTRKEVKKLIKQGRVTVNGRVVLDPGHSVSENDVVVLDGETVN 55 >UniRef50_UPI00016B2072 Hemolysin A n=3 Tax=candidate division TM7 RepID=UPI00016B2072 Length = 199 Score = 45.6 bits (107), Expect = 0.001, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPND--VVSIREKAKKQSR 154 RLD + +R++A + + VNG V+ + VS D V++I E+ ++ Sbjct: 4 RLDRYIVENRLTNSRSQAENYIRLGRVTVNGEVIKKCGFIVSTVDKVVLNIPEQYVSRAG 63 Query: 155 VK 156 +K Sbjct: 64 LK 65 >UniRef50_A4SAS0 Predicted protein n=11 Tax=Viridiplantae RepID=A4SAS0_OSTLU Length = 183 Score = 45.2 bits (106), Expect = 0.001, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 16/46 (34%) Query: 92 ALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQV 137 + RL V+ R T EA + + V +V Y V Sbjct: 103 SFCRRRLATVLVRARMCETLREATTFIEQGHVRVGAKVTRNPGYIV 148 >UniRef50_Q0AX41 Pseudouridine synthase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AX41_SYNWW Length = 239 Score = 45.2 bits (106), Expect = 0.001, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 96 GRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREK 148 RL + G ++R +A +L++ + VN + + ++ + P D V K Sbjct: 1 MRLAKYLAESGI-SSRRQAERLITQGKVKVNDKTITELAFTLKPGDRVEFAGK 52 >UniRef50_Q1D5Q2 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q1D5Q2_MYXXD Length = 745 Score = 45.2 bits (106), Expect = 0.001, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPN-DVVSIR 146 RL + R G +R A +L++ + VN + V +V P D+V++ Sbjct: 5 RLQKYLARAGVA-SRRHAEELITAGRVAVNNKTVTELGSRVEPGTDLVTVD 54 >UniRef50_D1AKQ2 Hemolysin A n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AKQ2_SEBTE Length = 248 Score = 45.2 bits (106), Expect = 0.001, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 39/88 (44%), Gaps = 3/88 (3%) Query: 94 LEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQS 153 ++ RLD + G+ +R +A++ + +++N + V A + N ++IR K K + Sbjct: 1 MKRRLDVFLVEEGYFDSREKAKREIMLGNVIINEQAVTKAGTMIKDNQELNIRIKEKLKY 60 Query: 154 RVKAALELAEQREKPTWLEVDAGKMEGT 181 + L+L + +D + Sbjct: 61 VSRGGLKLERAL---EYWNLDFNNKKIL 85 >UniRef50_A9UVZ1 Predicted protein n=3 Tax=Eukaryota RepID=A9UVZ1_MONBE Length = 138 Score = 45.2 bits (106), Expect = 0.001, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 48/133 (36%), Gaps = 7/133 (5%) Query: 36 QAPGQHGARKPRLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGEN-----L 90 + H + + D+ + R +V Y + R+ Y+ + + Sbjct: 3 RKLKHHEQKLLKKVDFTERNRRTSEVMHRYHIQRREDYTKYQMGIIHSTKSLAACQRVTV 62 Query: 91 LALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQV--SPNDVVSIREK 148 ++ RL V R+ T +A +LV I V + V ++ V D V+ + Sbjct: 63 SSICRRRLPVVAVRLKLAETVKQAVKLVEQGHIRVGPQTVTDPAFLVTRRMEDFVTWVDA 122 Query: 149 AKKQSRVKAALEL 161 +K + V+ + Sbjct: 123 SKMRRHVQKYNDK 135 >UniRef50_UPI0001BC42EF hemolysin A n=2 Tax=Fusobacterium RepID=UPI0001BC42EF Length = 267 Score = 45.2 bits (106), Expect = 0.001, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 35/60 (58%) Query: 97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVK 156 RLD ++++ G+ + +A++L+ +++VN + ++ A ++ ++IR K ++ V Sbjct: 4 RLDQILWKYGYVDSIEKAKRLIMLGSVIVNEQRIDKAGTLFKYSEEMNIRVKGQENPYVS 63 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.319 0.154 0.474 Lambda K H 0.267 0.0469 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,443,356,838 Number of Sequences: 3077464 Number of extensions: 61934542 Number of successful extensions: 202009 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 821 Number of HSP's successfully gapped in prelim test: 302 Number of HSP's that attempted gapping in prelim test: 199554 Number of HSP's gapped (non-prelim): 1707 length of query: 206 length of database: 1,040,396,356 effective HSP length: 123 effective length of query: 83 effective length of database: 661,868,284 effective search space: 54935067572 effective search space used: 54935067572 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 90 (39.1 bits)