15/01/2012 18:47:40 : INFO  : Run start: Sun Jan 15 18:47:40 GMT 2012
15/01/2012 18:47:41 : INFO  : Initialised job
15/01/2012 18:47:41 : INFO  : Renaming log file 'phyre2_20120115_184740.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/5b9f3666758bd899/phyre_20120115_184740.log'
15/01/2012 18:47:41 : INFO  : Initialised job:
Sequence
>batch____
MKHDHFVVQSPDKPAQQLLLLFHGVGDNPVAMGEIGNWFAPLFPDALVVSVGGAEPSGNP
AGRQWFSVQGITEDNRQARVDAIMPTFIETVRYWQKQSGVGANATALIGFSQGAIMVLES
IKAEPGLASRVIAFNGRYASLPETASTATTIHLIHGGEDPVIDLAHAVAAQEALISAGGD
VTLDIVEDLGHAIDNRSMQFALDHLRYTIPKHYFDEALSGGKPGDDDVIEMM

15/01/2012 18:47:41 : INFO  : Checked sequence
15/01/2012 18:47:41 : INFO  : Finding homologues with PSI-BLAST
15/01/2012 18:47:41 : INFO  : PSI-BLAST 3 iterations
15/01/2012 18:49:20 : INFO  : PSI-BLAST 5 iterations
15/01/2012 18:51:42 : INFO  : Finished PSI-BLAST
15/01/2012 18:51:42 : INFO  : Running Buildali to generate a3m file
15/01/2012 19:09:50 : INFO  : Converting to HMM
15/01/2012 19:09:52 : INFO  : Calibrating HMM
15/01/2012 19:09:58 : INFO  : Searching HMM database
15/01/2012 19:14:23 : INFO  : Finished buildali
15/01/2012 19:14:23 : INFO  : Predicting secondary structure
15/01/2012 19:14:24 : INFO  : Predicted secondary structure (PSI-Pred)
15/01/2012 19:14:24 : INFO  : Predicting Disordered regions
15/01/2012 19:14:24 : INFO  : Predicted Disorder (Disopred)
15/01/2012 19:14:24 : INFO  : Running memsat_svm check
15/01/2012 19:15:43 : INFO  : Globular protein
15/01/2012 19:15:43 : INFO  : Predicted Transmembrane (memsat_svm) ID '5b9f3666758bd899'
15/01/2012 19:15:43 : INFO  : Initialising fold library search
15/01/2012 19:15:43 : INFO  : Initialised search input
15/01/2012 19:15:43 : INFO  : Building Ensemble models
15/01/2012 19:15:43 : INFO  : Building hh.d2h1ia1.model.1.pdb
15/01/2012 19:15:44 : INFO  : Building hh.c3og9A_.model.2.pdb
15/01/2012 19:15:44 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/5b9f3666758bd899/hh.c3og9A_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/5b9f3666758bd899/c3og9A_.2.pdb
15/01/2012 19:15:44 : INFO  : Building hh.c2h1iA_.model.3.pdb
15/01/2012 19:15:44 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/5b9f3666758bd899/hh.c2h1iA_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/5b9f3666758bd899/c2h1iA_.3.pdb
15/01/2012 19:15:44 : INFO  : Building hh.c2ecfA_.model.4.pdb
15/01/2012 19:15:45 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/5b9f3666758bd899/hh.c2ecfA_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/5b9f3666758bd899/c2ecfA_.4.pdb
15/01/2012 19:15:45 : INFO  : Building hh.c3u0vA_.model.5.pdb
15/01/2012 19:15:45 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/5b9f3666758bd899/hh.c3u0vA_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/5b9f3666758bd899/c3u0vA_.5.pdb
15/01/2012 19:15:45 : INFO  : Building hh.d2r8ba1.model.6.pdb
15/01/2012 19:15:46 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/5b9f3666758bd899/hh.d2r8ba1.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/5b9f3666758bd899/d2r8ba1.6.pdb
15/01/2012 19:15:46 : INFO  : Building d2h1ia1.1.pdb
15/01/2012 19:15:46 : INFO  : Building c3og9A_.2.pdb
15/01/2012 19:15:46 : INFO  : Building c2h1iA_.3.pdb
15/01/2012 19:15:47 : INFO  : Building c2ecfA_.4.pdb
15/01/2012 19:15:47 : INFO  : Building c3u0vA_.5.pdb
15/01/2012 19:15:47 : INFO  : Building d2r8ba1.6.pdb
15/01/2012 19:15:48 : INFO  : Building d1fj2a_.7.pdb
15/01/2012 19:15:48 : INFO  : Building c2r8bA_.8.pdb
15/01/2012 19:15:48 : INFO  : Building c3cn9B_.9.pdb
15/01/2012 19:15:49 : INFO  : Building d1auoa_.10.pdb
15/01/2012 19:15:49 : INFO  : Building c3azqA_.11.pdb
15/01/2012 19:15:49 : INFO  : Building c2hu7A_.12.pdb
15/01/2012 19:15:50 : INFO  : Building d3b5ea1.13.pdb
15/01/2012 19:15:50 : INFO  : Building c1z68A_.14.pdb
15/01/2012 19:15:51 : INFO  : Building c2g5tA_.15.pdb
15/01/2012 19:15:51 : INFO  : Building c2eepA_.16.pdb
15/01/2012 19:15:52 : INFO  : Building c2qtbB_.17.pdb
15/01/2012 19:15:52 : INFO  : Building d1ufoa_.18.pdb
15/01/2012 19:15:53 : INFO  : Building c3doiA_.19.pdb
15/01/2012 19:15:53 : INFO  : Building c2o2gA_.20.pdb
15/01/2012 19:16:00 : INFO  : Finished HH model building
15/01/2012 19:16:00 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
15/01/2012 19:16:05 : INFO  : html domain output complete ID '5b9f3666758bd899'
15/01/2012 19:16:05 : WARN  : Failed to run assembler on model
15/01/2012 19:16:05 : WARN  : Failed to run assembler on model
15/01/2012 19:16:05 : WARN  : Failed to add sidechains, using backbone only
15/01/2012 19:16:05 : WARN  : Failed to run assembler on model
15/01/2012 19:16:05 : WARN  : Failed to add sidechains, using backbone only
15/01/2012 19:51:44 : INFO  : Run end  : Sun Jan 15 19:51:44 GMT 2012
