Phyre 2 alignment of P07117 with c2wb1J_

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Job Description | P07117
Confidence | 2.17% | Date | Thu Jan 5 11:00:11 GMT 2012
Rank | 95 | Aligned Residues | 28
% Identity | 29% | Template | c2wb1J_
PDB info | PDB header:transcription | Chain: J: PDB Molecule:dna-directed rna polymerase rpo13 subunit; | PDBTitle: the complete structure of the archaeal 13-subunit dna-2 directed rna polymerase
Resolution | 3.52 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 471 | . | . | . | . | . | . | . | . | 480 | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | L | L | G | K | A | P | S | A | A | M | Q | K | R | F | A | E | A | D | A | H | Y | H | S | A | P | P | S | R
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | L | L | N | G | K | I | S | V | D | E | A | K | R | L | F | E | D | N | Y | K | D | Y | E | K | R | D | S | R
Template Known Secondary structure |  | T | T |  | S | S | S | G | G | G | T |  |  |  |  |  |  |  |  | T | T | S | T | T |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 54 | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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