17/01/2012 13:34:50 : INFO  : Run start: Tue Jan 17 13:34:49 GMT 2012
17/01/2012 13:34:56 : INFO  : Initialised job
17/01/2012 13:34:58 : INFO  : Renaming log file 'phyre2_20120117_133449.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/5b90d93565429cfc/phyre_20120117_133449.log'
17/01/2012 13:34:59 : INFO  : Initialised job:
Sequence
>batch____
MAISTPMLVTFCVYIFGMILIGFIAWRSTKNFDDYILGGRSLGPFVTALSAGASDMSGWL
LMGLPGAVFLSGISESWIAIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTGRFED
KSRILRIISALVILLFFTIYCASGIVAGARLFESTFGMSYETALWAGAAATILYTFIGGF
LAVSWTDTVQASLMIFALILTPVIVIISVGGFGDSLEVIKQKSIENVDMLKGLNFVAIIS
LMGWGLGYFGQPHILARFMAADSHHSIVHARRISMTWMILCLAGAVAVGFFGIAYFNDHP
ALAGAVNQNAERVFIELAQILFNPWIAGILLSAILAAVMSTLSCQLLVCSSAITEDLYKA
FLRKHASQKELVWVGRVMVLVVALVAIALAANPENRVLGLVSYAWAGFGAAFGPVVLFSV
MWSRMTRNGALAGMIIGALTVIVWKQFGWLGLYEIIPGFIFGSIGIVVFSLLGKAPSAAM
QKRFAEADAHYHSAPPSRLQES

17/01/2012 13:35:00 : INFO  : Checked sequence
17/01/2012 13:35:04 : INFO  : Finding homologues with PSI-BLAST
17/01/2012 13:35:05 : INFO  : PSI-BLAST 3 iterations
17/01/2012 13:39:06 : INFO  : PSI-BLAST 5 iterations
17/01/2012 13:43:27 : INFO  : Finished PSI-BLAST
17/01/2012 13:43:29 : INFO  : Running Buildali to generate a3m file
17/01/2012 14:06:58 : INFO  : Converting to HMM
17/01/2012 14:07:07 : INFO  : Calibrating HMM
17/01/2012 14:07:28 : INFO  : Searching HMM database
17/01/2012 14:19:45 : INFO  : Finished buildali
17/01/2012 14:19:46 : INFO  : Predicting secondary structure
17/01/2012 14:19:52 : INFO  : Predicted secondary structure (PSI-Pred)
17/01/2012 14:19:54 : INFO  : Predicting Disordered regions
17/01/2012 14:19:57 : INFO  : Predicted Disorder (Disopred)
17/01/2012 14:19:58 : INFO  : Running memsat_svm check
17/01/2012 14:21:15 : INFO  : Globular protein
17/01/2012 14:21:16 : INFO  : Predicted Transmembrane (memsat_svm) ID '5b90d93565429cfc'
17/01/2012 14:21:17 : INFO  : Initialising fold library search
17/01/2012 14:21:20 : INFO  : Initialised search input
17/01/2012 14:21:21 : INFO  : Building Ensemble models
17/01/2012 14:21:24 : INFO  : Building hh.c2xq2A_.model.1.pdb
17/01/2012 14:21:36 : INFO  : Building hh.c3dh4A_.model.2.pdb
17/01/2012 14:21:46 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/5b90d93565429cfc/hh.c3dh4A_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/5b90d93565429cfc/c3dh4A_.2.pdb
17/01/2012 14:21:50 : INFO  : Building c2xq2A_.1.pdb
17/01/2012 14:22:01 : INFO  : Building c3dh4A_.2.pdb
17/01/2012 14:22:12 : INFO  : Building c2jlnA_.3.pdb
17/01/2012 14:22:23 : INFO  : Building c3giaA_.4.pdb
17/01/2012 14:22:34 : INFO  : Building c3lrcC_.5.pdb
17/01/2012 14:22:47 : INFO  : Building c2w8aC_.6.pdb
17/01/2012 14:22:59 : INFO  : Building c3hfxA_.7.pdb
17/01/2012 14:23:11 : INFO  : Building d2a65a1.8.pdb
17/01/2012 14:23:24 : INFO  : Building c3b9yA_.9.pdb
17/01/2012 14:23:37 : INFO  : Building c3rlbA_.10.pdb
17/01/2012 14:23:48 : INFO  : Building c3mk7F_.11.pdb
17/01/2012 14:24:03 : INFO  : Building c3hd6A_.12.pdb
17/01/2012 14:24:14 : INFO  : Building c2k9yB_.13.pdb
17/01/2012 14:24:26 : INFO  : Building c2k9yA_.14.pdb
17/01/2012 14:24:38 : INFO  : Building d1u7ga_.15.pdb
17/01/2012 14:24:50 : INFO  : Building c4a2nB_.16.pdb
17/01/2012 14:25:02 : INFO  : Building c3chxF_.17.pdb
17/01/2012 14:25:12 : INFO  : Building c3p5nA_.18.pdb
17/01/2012 14:25:24 : INFO  : Building c1yewF_.19.pdb
17/01/2012 14:25:36 : INFO  : Building c1a87A_.20.pdb
17/01/2012 14:26:18 : INFO  : Finished HH model building
17/01/2012 14:26:20 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
17/01/2012 14:27:11 : INFO  : html domain output complete ID '5b90d93565429cfc'
17/01/2012 15:42:06 : INFO  : Run end  : Tue Jan 17 15:42:05 GMT 2012
