Phyre 2 alignment of P39220 with c3n3fB_

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Job Description | P39220
Confidence | 6.71% | Date | Thu Jan 5 11:58:32 GMT 2012
Rank | 46 | Aligned Residues | 28
% Identity | 14% | Template | c3n3fB_
PDB info | PDB header:protein binding | Chain: B: PDB Molecule:collagen alpha-1(xv) chain; | PDBTitle: crystal structure of the human collagen xv trimerization domain: a2 potent trimerizing unit common to multiplexin collagens
Resolution | 2.00 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 103 | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | K | N | P | D | E | L | V | A | K | G | N | M | R | W | V | A | Q | T | F | G | D | I | E | L | S | V | T | F | F | I | E | K | N | K | I | C
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |
Template Sequence |  | S | N | M | D | D | M | L | Q | K | A | H | L | V | . | . | . | . | . | . | I | E | G | T | F | I | . | . | Y | L | R | D | S | T | E | F | F
Template Known Secondary structure |  | S | S |  |  |  |  |  | T |  | G | G | G | S | . | . | . | . | . | . |  | T | T |  |  |  | . | . |  |  | T | T | T | T |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 7 | . | . | 10 | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  | 20 | . | . | . | . | . |  |  | . | . | . | . | 30 | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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