13/01/2012 00:05:29 : INFO  : Run start: Fri Jan 13 00:05:27 GMT 2012
13/01/2012 00:05:36 : INFO  : Initialised job
13/01/2012 00:05:38 : INFO  : Renaming log file 'phyre2_20120113_000527.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/5b6999045ef68bf5/phyre_20120113_000527.log'
13/01/2012 00:05:40 : INFO  : Initialised job:
Sequence
>batch____
MKVSVPGMPVTLLNMSKNDIYKMVSGDKMDVKMNIFQRLWETLRHLFWSDKQTEAYKLLF
NFVNNQTGNINASEYFTGAINENEREKFINSLELFNKLKTCAKNPDELVAKGNMRWVAQT
FGDIELSVTFFIEKNKICTQTLQLHKGQGNLGVDLRKAYLPGVDMRDCYLGKKTMKGSND
ILYERPGWNANLGVLPRTVLPRTVLTRTVLTWTVLP

13/01/2012 00:05:42 : INFO  : Checked sequence
13/01/2012 00:05:47 : INFO  : Finding homologues with PSI-BLAST
13/01/2012 00:05:48 : INFO  : PSI-BLAST 3 iterations
13/01/2012 00:06:54 : INFO  : PSI-BLAST 5 iterations
13/01/2012 00:08:12 : INFO  : Finished PSI-BLAST
13/01/2012 00:08:15 : INFO  : Running Buildali to generate a3m file
13/01/2012 00:11:21 : INFO  : Converting to HMM
13/01/2012 00:11:23 : INFO  : Calibrating HMM
13/01/2012 00:11:39 : INFO  : Searching HMM database
13/01/2012 00:15:33 : INFO  : Finished buildali
13/01/2012 00:15:35 : INFO  : Predicting secondary structure
13/01/2012 00:15:46 : INFO  : Predicted secondary structure (PSI-Pred)
13/01/2012 00:15:48 : INFO  : Predicting Disordered regions
13/01/2012 00:15:54 : INFO  : Predicted Disorder (Disopred)
13/01/2012 00:15:56 : INFO  : Running memsat_svm check
13/01/2012 00:20:06 : INFO  : Globular protein
13/01/2012 00:20:08 : INFO  : Predicted Transmembrane (memsat_svm) ID '5b6999045ef68bf5'
13/01/2012 00:20:11 : INFO  : Initialising fold library search
13/01/2012 00:20:16 : INFO  : Initialised search input
13/01/2012 00:20:20 : INFO  : Building Ensemble models
13/01/2012 00:20:26 : INFO  : Building hh.c3cxbA_.model.1.pdb
13/01/2012 00:20:52 : INFO  : Building c3cxbA_.1.pdb
13/01/2012 00:21:15 : INFO  : Building c3n90A_.2.pdb
13/01/2012 00:21:38 : INFO  : Building d2j8ia1.3.pdb
13/01/2012 00:22:01 : INFO  : Building c1v0dA_.4.pdb
13/01/2012 00:22:23 : INFO  : Building d1v0da_.5.pdb
13/01/2012 00:22:46 : INFO  : Building d2fvka1.6.pdb
13/01/2012 00:23:13 : INFO  : Building d2j8ka1.7.pdb
13/01/2012 00:23:36 : INFO  : Building c2j8iB_.8.pdb
13/01/2012 00:23:58 : INFO  : Building c2xtwB_.9.pdb
13/01/2012 00:24:21 : INFO  : Building c2j8kA_.10.pdb
13/01/2012 00:24:43 : INFO  : Building c3du1X_.11.pdb
13/01/2012 00:25:06 : INFO  : Building c2jx3A_.12.pdb
13/01/2012 00:25:28 : INFO  : Building c1soxB_.13.pdb
13/01/2012 00:25:50 : INFO  : Building d1zh5a1.14.pdb
13/01/2012 00:26:10 : INFO  : Building c1i8nA_.15.pdb
13/01/2012 00:26:31 : INFO  : Building d1i8na_.16.pdb
13/01/2012 00:26:53 : INFO  : Building c2o6wA_.17.pdb
13/01/2012 00:27:16 : INFO  : Building d2f3la1.18.pdb
13/01/2012 00:27:39 : INFO  : Building d1tuaa2.19.pdb
13/01/2012 00:28:02 : INFO  : Building c1nh1A_.20.pdb
13/01/2012 00:28:53 : INFO  : Finished HH model building
13/01/2012 00:28:56 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
13/01/2012 00:31:30 : INFO  : html domain output complete ID '5b6999045ef68bf5'
13/01/2012 00:38:33 : INFO  : Run end  : Fri Jan 13 00:38:31 GMT 2012
