Phyre 2 alignment of P39220 with c1yj5B_

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Job Description | P39220
Confidence | 6.25% | Date | Thu Jan 5 11:58:32 GMT 2012
Rank | 54 | Aligned Residues | 25
% Identity | 20% | Template | c1yj5B_
PDB info | PDB header:transferase | Chain: B: PDB Molecule:5' polynucleotide kinase-3' phosphatase catalytic domain; | PDBTitle: molecular architecture of mammalian polynucleotide kinase, a dna2 repair enzyme
Resolution | 2.80 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 106 | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | D | E | L | V | A | K | G | N | M | R | W | V | A | Q | T | F | G | D | I | E | L | S | V | T | F | F | I | E | K | N | K
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | D | H | L | Q | E | Q | A | N | E | G | . | . | . | . | . | . | I | P | I | S | V | E | D | S | V | F | V | G | D | A | A
Template Known Secondary structure |  |  |  |  |  |  | T | T | S | S | S | . | . | . | . | . | . |  |  |  |  | S | T | T |  |  |  |  |  | S |  | S
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 266 | . | . | . | 270 | . | . | . | . | . |  |  |  |  |  |  | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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