Phyre 2 alignment of P39220 with c2vbeA_

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Job Description | P39220
Confidence | 6.61% | Date | Thu Jan 5 11:58:32 GMT 2012
Rank | 48 | Aligned Residues | 36
% Identity | 39% | Template | c2vbeA_
PDB info | PDB header:viral protein | Chain: A: PDB Molecule:tailspike-protein; | PDBTitle: tailspike protein of bacteriophage sf6
Resolution | 1.98 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 123 | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | D | I | E | L | S | V | T | F | F | I | E | K | N | K | I | C | T | Q | T | L | Q | L | H | K | G | Q | G | N | L | G | V | D | L | R | K | A | Y | L | P | G | V | D | M | R | D | C | Y | L | G | K | K | T
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | D | I | N | E | C | V | S | F | . | . | . | D | K | C | I | F | N | K | P | L | R | Y | L | R | S | . | . | . | . | . | . | . | . | . | . | . | . | . | G | G | V | S | V | T | D | C | Y | L | A | G | I | T
Template Known Secondary structure |  | S |  |  | S |  |  |  |  | . | . | . |  | S |  |  |  | S | S |  |  |  |  |  | S |  | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  | S |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 495 | . | . | . | . | 500 | . | . |  |  |  | . | . | . | . | . | . | . | 510 | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | 520 | . | . | . | . | . | . | . | . | . | 530

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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