Phyre 2 Results for P39220

Email | l.a.kelley@imperial.ac.uk
Description | P39220
Date | Thu Jan 5 11:58:32 GMT 2012
Unique Job ID | 5b6999045ef68bf5

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c3cxbA_ |
|  | 96.6 | 23 | PDB header:signaling protein Chain: A: PDB Molecule:protein sifa; PDBTitle: crystal structure of sifa and skip
2 | c3n90A_ |
|  | 47.0 | 18 | PDB header:unknown function Chain: A: PDB Molecule:thylakoid lumenal 15 kda protein 1, chloroplastic; PDBTitle: the 1.7 angstrom resolution crystal structure of at2g44920, a2 pentapeptide repeat protein from arabidopsis thaliana thylakoid3 lumen.
3 | d2j8ia1 |
|  | 43.0 | 20 | Fold:Single-stranded right-handed beta-helix Superfamily:Pentapeptide repeat-like Family:Pentapeptide repeats
4 | c1v0dA_ |
|  | 32.0 | 22 | PDB header:hydrolase Chain: A: PDB Molecule:dna fragmentation factor 40 kda subunit; PDBTitle: crystal structure of caspase-activated dnase (cad)
5 | d1v0da_ |
|  | 32.0 | 22 | Fold:His-Me finger endonucleases Superfamily:His-Me finger endonucleases Family:Caspase-activated DNase, CAD (DffB, DFF40)
6 | d2fvka1 |
|  | 27.0 | 14 | Fold:Composite domain of metallo-dependent hydrolases Superfamily:Composite domain of metallo-dependent hydrolases Family:Hydantoinase (dihydropyrimidinase)
7 | d2j8ka1 |
|  | 25.0 | 29 | Fold:Single-stranded right-handed beta-helix Superfamily:Pentapeptide repeat-like Family:Pentapeptide repeats
8 | c2j8iB_ |
|  | 18.1 | 20 | PDB header:toxin Chain: B: PDB Molecule:np275; PDBTitle: structure of np275, a pentapeptide repeat protein from2 nostoc punctiforme
9 | c2xtwB_ |
|  | 15.9 | 14 | PDB header:cell cycle Chain: B: PDB Molecule:qnrb1; PDBTitle: structure of qnrb1 (full length), a plasmid-mediated2 fluoroquinolone resistance protein
10 | c2j8kA_ |
|  | 15.0 | 29 | PDB header:toxin Chain: A: PDB Molecule:np275-np276; PDBTitle: structure of the fusion of np275 and np276, pentapeptide2 repeat proteins from nostoc punctiforme
11 | c3du1X_ |
|  | 14.1 | 29 | PDB header:structural protein Chain: X: PDB Molecule:all3740 protein; PDBTitle: the 2.0 angstrom resolution crystal structure of hetl, a pentapeptide2 repeat protein involved in heterocyst differentiation regulation from3 the cyanobacterium nostoc sp. strain pcc 7120
12 | c2jx3A_ |
|  | 14.1 | 24 | PDB header:dna binding protein Chain: A: PDB Molecule:protein dek; PDBTitle: nmr solution structure of the n-terminal domain of dek
13 | c1soxB_ |
|  | 13.8 | 13 | PDB header:oxidoreductase Chain: B: PDB Molecule:sulfite oxidase; PDBTitle: sulfite oxidase from chicken liver
14 | d1zh5a1 |
|  | 13.2 | 14 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:La domain
15 | c1i8nA_ |
|  | 13.1 | 48 | PDB header:toxin Chain: A: PDB Molecule:anti-platelet protein; PDBTitle: crystal structure of leech anti-platelet protein
16 | d1i8na_ |
|  | 13.1 | 48 | Fold:Hairpin loop containing domain-like Superfamily:Hairpin loop containing domain-like Family:Anti-platelet protein
17 | c2o6wA_ |
|  | 12.9 | 18 | PDB header:unknown function Chain: A: PDB Molecule:repeat five residue (rfr) protein or PDBTitle: crystal structure of a pentapeptide repeat protein (rfr23)2 from the cyanobacterium cyanothece 51142
18 | d2f3la1 |
|  | 11.8 | 24 | Fold:Single-stranded right-handed beta-helix Superfamily:Pentapeptide repeat-like Family:Pentapeptide repeats
19 | d1tuaa2 |
|  | 11.6 | 10 | Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I)
20 | c1nh1A_ |
|  | 11.4 | 27 | PDB header:avirulence protein Chain: A: PDB Molecule:avirulence b protein; PDBTitle: crystal structure of the type iii effector avrb from2 pseudomonas syringae.
21 | d1nh1a_ |
| not modelled | 11.4 | 27 | Fold:Antivirulence factor Superfamily:Antivirulence factor Family:Antivirulence factor
22 | c3ia0c_ |
| not modelled | 11.3 | 26 | PDB header:structural protein Chain: C: PDB Molecule:ethanolamine utilization protein euts; PDBTitle: ethanolamine utilization microcompartment shell subunit,2 euts-g39v mutant
23 | c2g0yA_ |
| not modelled | 11.1 | 18 | PDB header:unknown function Chain: A: PDB Molecule:pentapeptide repeat protein; PDBTitle: crystal structure of a lumenal pentapeptide repeat protein from2 cyanothece sp 51142 at 2.3 angstrom resolution. tetragonal crystal3 form
24 | c3lo0A_ |
| not modelled | 10.9 | 28 | PDB header:hydrolase Chain: A: PDB Molecule:inorganic pyrophosphatase; PDBTitle: crystal structure of inorganic pyrophosphatase from2 ehrlichia chaffeensis
25 | c2wknE_ |
| not modelled | 10.7 | 31 | PDB header:hydrolase Chain: E: PDB Molecule:formamidase; PDBTitle: gamma lactamase from delftia acidovorans
26 | c2wvmA_ |
| not modelled | 9.6 | 53 | PDB header:transferase Chain: A: PDB Molecule:mannosyl-3-phosphoglycerate synthase; PDBTitle: h309a mutant of mannosyl-3-phosphoglycerate synthase from2 thermus thermophilus hb27 in complex with3 gdp-alpha-d-mannose and mg(ii)
27 | c2xt4B_ |
| not modelled | 9.4 | 14 | PDB header:cell cycle Chain: B: PDB Molecule:mcbg-like protein; PDBTitle: structure of the pentapeptide repeat protein albg, a2 resistance factor for the topoisomerase poison albicidin.
28 | c3ifuA_ |
| not modelled | 9.1 | 26 | PDB header:transcription Chain: A: PDB Molecule:non-structural protein; PDBTitle: the crystal structure of porcine reproductive and2 respiratory syndrome virus (prrsv) leader protease nsp1
29 | d1yj5a1 |
| not modelled | 9.0 | 20 | Fold:HAD-like Superfamily:HAD-like Family:phosphatase domain of polynucleotide kinase
30 | c2xt4A_ |
| not modelled | 8.7 | 11 | PDB header:cell cycle Chain: A: PDB Molecule:mcbg-like protein; PDBTitle: structure of the pentapeptide repeat protein albg, a2 resistance factor for the topoisomerase poison albicidin.
31 | c3mjjD_ |
| not modelled | 8.5 | 26 | PDB header:hydrolase Chain: D: PDB Molecule:predicted acetamidase/formamidase; PDBTitle: crystal structure analysis of a recombinant predicted2 acetamidase/formamidase from the thermophile thermoanaerobacter3 tengcongensis
32 | d1isia_ |
| not modelled | 8.4 | 21 | Fold:Flavodoxin-like Superfamily:N-(deoxy)ribosyltransferase-like Family:ADP ribosyl cyclase-like
33 | d1j2za_ |
| not modelled | 8.4 | 15 | Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:UDP N-acetylglucosamine acyltransferase
34 | c2w7zB_ |
| not modelled | 8.3 | 21 | PDB header:inhibitor Chain: B: PDB Molecule:pentapeptide repeat family protein; PDBTitle: structure of the pentapeptide repeat protein efsqnr, a dna2 gyrase inhibitor. free amines modified by cyclic3 pentylation with glutaraldehyde.
35 | c3t2dA_ |
| not modelled | 8.0 | 41 | PDB header:lyase, hydrolase Chain: A: PDB Molecule:fructose-1,6-bisphosphate aldolase/phosphatase; PDBTitle: fructose-1,6-bisphosphate aldolase/phosphatase from thermoproteus2 neutrophilus, fbp-bound form
36 | c1jrjA_ |
| not modelled | 8.0 | 26 | PDB header:hormone/growth factor Chain: A: PDB Molecule:exendin-4; PDBTitle: solution structure of exendin-4 in 30-vol% trifluoroethanol
37 | c3b9eA_ |
| not modelled | 7.9 | 26 | PDB header:hydrolase Chain: A: PDB Molecule:chitinase a; PDBTitle: crystal structure of inactive mutant e315m chitinase a from2 vibrio harveyi
38 | c3b9tD_ |
| not modelled | 7.9 | 40 | PDB header:hydrolase Chain: D: PDB Molecule:twin-arginine translocation pathway signal protein; PDBTitle: crystal structure of predicted acetamidase/formamidase (yp_546212.1)2 from methylobacillus flagellatus kt at 1.58 a resolution
39 | c2zu8A_ |
| not modelled | 7.6 | 47 | PDB header:transferase Chain: A: PDB Molecule:mannosyl-3-phosphoglycerate synthase; PDBTitle: crystal structure of mannosyl-3-phosphoglycerate synthase2 from pyrococcus horikoshii
40 | c3pssB_ |
| not modelled | 7.6 | 17 | PDB header:cell cycle Chain: B: PDB Molecule:qnr; PDBTitle: crystal structure of ahqnr, the qnr protein from aeromonas hydrophila2 (p21 crystal form)
41 | c2eg9B_ |
| not modelled | 7.1 | 26 | PDB header:hydrolase Chain: B: PDB Molecule:adp-ribosyl cyclase 1; PDBTitle: crystal structure of the truncated extracellular domain of2 mouse cd38
42 | d2cqka1 |
| not modelled | 7.1 | 15 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:La domain
43 | d1xnta_ |
| not modelled | 6.9 | 27 | Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:N-terminal domain of xrcc1
44 | c1xnaA_ |
| not modelled | 6.9 | 27 | PDB header:dna binding protein Chain: A: PDB Molecule:protein (dna-repair protein xrcc1); PDBTitle: nmr solution structure of the single-strand break repair2 protein xrcc1-n-terminal domain
45 | d1sura_ |
| not modelled | 6.8 | 16 | Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:PAPS reductase-like
46 | c3n3fB_ |
| not modelled | 6.7 | 14 | PDB header:protein binding Chain: B: PDB Molecule:collagen alpha-1(xv) chain; PDBTitle: crystal structure of the human collagen xv trimerization domain: a2 potent trimerizing unit common to multiplexin collagens
47 | c2xz2A_ |
| not modelled | 6.6 | 26 | PDB header:rna-binding protein Chain: A: PDB Molecule:cstf-50, isoform b; PDBTitle: crystal structure of cstf-50 homodimerization domain
48 | c2vbeA_ |
| not modelled | 6.6 | 39 | PDB header:viral protein Chain: A: PDB Molecule:tailspike-protein; PDBTitle: tailspike protein of bacteriophage sf6
49 | c3cgiD_ |
| not modelled | 6.4 | 50 | PDB header:unknown function Chain: D: PDB Molecule:propanediol utilization protein pduu; PDBTitle: crystal structure of the pduu shell protein from the pdu2 microcompartment
50 | d1hs5a_ |
| not modelled | 6.4 | 34 | Fold:p53 tetramerization domain Superfamily:p53 tetramerization domain Family:p53 tetramerization domain
51 | c2goyC_ |
| not modelled | 6.4 | 22 | PDB header:oxidoreductase Chain: C: PDB Molecule:adenosine phosphosulfate reductase; PDBTitle: crystal structure of assimilatory adenosine 5'-2 phosphosulfate reductase with bound aps
52 | c1d0rA_ |
| not modelled | 6.3 | 26 | PDB header:hormone/growth factor Chain: A: PDB Molecule:glucagon-like peptide-1-(7-36)-amide; PDBTitle: solution structure of glucagon-like peptide-1-(7-36)-amide2 in trifluoroethanol/water
53 | c2bhlB_ |
| not modelled | 6.3 | 43 | PDB header:oxidoreductase (choh(d)-nadp) Chain: B: PDB Molecule:glucose-6-phosphate 1-dehydrogenase; PDBTitle: x-ray structure of human glucose-6-phosphate dehydrogenase2 (deletion variant) complexed with glucose-6-phosphate
54 | c1yj5B_ |
| not modelled | 6.3 | 20 | PDB header:transferase Chain: B: PDB Molecule:5' polynucleotide kinase-3' phosphatase catalytic domain; PDBTitle: molecular architecture of mammalian polynucleotide kinase, a dna2 repair enzyme
55 | d2a1ja1 |
| not modelled | 6.2 | 17 | Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like
56 | c3nb2B_ |
| not modelled | 6.1 | 25 | PDB header:ligase Chain: B: PDB Molecule:secreted effector protein; PDBTitle: crystal structure of e. coli o157:h7 effector protein nlel
57 | c2j9wB_ |
| not modelled | 6.1 | 19 | PDB header:protein transport Chain: B: PDB Molecule:vps28-prov protein; PDBTitle: structural insight into the escrt-i-ii link and its role in2 mvb trafficking
58 | d1khia2 |
| not modelled | 6.1 | 36 | Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like
59 | d1whra_ |
| not modelled | 6.0 | 14 | Fold:IF3-like Superfamily:R3H domain Family:R3H domain
60 | d1wvfa1 |
| not modelled | 5.9 | 31 | Fold:Ferredoxin-like Superfamily:FAD-linked oxidases, C-terminal domain Family:Vanillyl-alcohol oxidase-like
61 | d2f4la1 |
| not modelled | 5.8 | 24 | Fold:CUB-like Superfamily:Acetamidase/Formamidase-like Family:Acetamidase/Formamidase-like
62 | c3hugJ_ |
| not modelled | 5.8 | 30 | PDB header:transcription/membrane protein Chain: J: PDB Molecule:probable conserved membrane protein; PDBTitle: crystal structure of mycobacterium tuberculosis anti-sigma factor rsla2 in complex with -35 promoter binding domain of sigl
63 | d1edqa2 |
| not modelled | 5.8 | 25 | Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Type II chitinase
64 | d2bm5a1 |
| not modelled | 5.7 | 4 | Fold:Single-stranded right-handed beta-helix Superfamily:Pentapeptide repeat-like Family:Pentapeptide repeats
65 | d1mjea2 |
| not modelled | 5.7 | 28 | Fold:BRCA2 tower domain Superfamily:BRCA2 tower domain Family:BRCA2 tower domain
66 | c2c1tA_ |
| not modelled | 5.6 | 17 | PDB header:protein transport/membrane protein Chain: A: PDB Molecule:importin alpha subunit; PDBTitle: structure of the kap60p:nup2 complex
67 | c1qkiE_ |
| not modelled | 5.6 | 43 | PDB header:oxidoreductase Chain: E: PDB Molecule:glucose-6-phosphate 1-dehydrogenase; PDBTitle: x-ray structure of human glucose 6-phosphate dehydrogenase2 (variant canton r459l) complexed with structural nadp+
68 | d1r4pb_ |
| not modelled | 5.5 | 39 | Fold:OB-fold Superfamily:Bacterial enterotoxins Family:Bacterial AB5 toxins, B-subunits
69 | d1l8na1 |
| not modelled | 5.5 | 45 | Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:alpha-D-glucuronidase/Hyaluronidase catalytic domain
70 | d2ef1a1 |
| not modelled | 5.5 | 23 | Fold:Flavodoxin-like Superfamily:N-(deoxy)ribosyltransferase-like Family:ADP ribosyl cyclase-like
71 | d1c4qa_ |
| not modelled | 5.3 | 33 | Fold:OB-fold Superfamily:Bacterial enterotoxins Family:Bacterial AB5 toxins, B-subunits
72 | d1zs4a1 |
| not modelled | 5.3 | 23 | Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Bacteriophage CII protein
73 | c2o8vA_ |
| not modelled | 5.2 | 21 | PDB header:oxidoreductase Chain: A: PDB Molecule:phosphoadenosine phosphosulfate reductase; PDBTitle: paps reductase in a covalent complex with thioredoxin c35a