Phyre 2 alignment of P39220 with d2jn4a1

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Job Description | P39220
Confidence | 4.00% | Date | Thu Jan 5 11:58:32 GMT 2012
Rank | 96 | Aligned Residues | 41
% Identity | 34% | Template | d2jn4a1
SCOP info | NifT/FixU barrel-like | NifT/FixU-like | NifT/FixU
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 168 | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  | . | . | . | 190 | . | . | . | . | . |  | . | . | . | . | 200 | . | . | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | C | Y | L | G | K | K | T | M | K | G | S | N | D | I | L | Y | E | R | P | . | . | . | . | . | . | . | . | . | . | . | G | W | N | A | N | L | G | V | L | . | P | R | T | V | L | P | R | T | V | L | T | R | T | V
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | A | Y | V | A | K | K | D | L | E | E | L | I | . | V | E | M | E | N | P | A | L | W | G | G | K | V | T | L | A | N | G | W | Q | L | E | L | P | A | M | A | A | D | T | P | L | P | I | T | V | E | A | R | K | L
Template Known Secondary structure |  |  |  |  | T | T | T | T |  |  |  |  |  | . |  |  |  | S | S | S | S | S |  | S | S |  |  |  |  | T | T | S |  |  |  |  |  |  |  |  | S | S | S |  | S | S |  |  |  |  |  |  |  | B |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 14 | . | . | . | . | . | 20 | . | . | . | . | . |  | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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