Phyre 2 alignment of P39220 with c3ifuA_

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Job Description | P39220
Confidence | 9.09% | Date | Thu Jan 5 11:58:32 GMT 2012
Rank | 28 | Aligned Residues | 27
% Identity | 26% | Template | c3ifuA_
PDB info | PDB header:transcription | Chain: A: PDB Molecule:non-structural protein; | PDBTitle: the crystal structure of porcine reproductive and2 respiratory syndrome virus (prrsv) leader protease nsp1
Resolution | 2.42 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Query Sequence |  | I | Y | K | M | V | S | G | D | K | M | D | V | K | M | N | I | F | Q | R | L | W | E | T | L | R | H | L | F | W | S | D | K
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Template Sequence |  | I | A | R | M | T | S | G | N | L | . | . | . | . | . | N | F | Q | Q | R | M | V | R | V | A | A | E | I | Y | R | A | G | Q
Template Known Secondary structure |  |  |  |  |  | T |  |  | G | G | . | . | . | . | . | G |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | S
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 84 | . | . | . | . | . | 90 | . | . |  |  |  |  |  | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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