 |
| Job Description | P07023 | | Confidence | 96.48% | Date | Thu Jan 5 11:00:05 GMT 2012 |
| Rank | 488 | Aligned Residues | 101 |
| % Identity | 21% | Template | c1llcA_ |
| PDB info |
PDB header:oxidoreductase(choh(d)-nad(a)) | Chain: A: PDB Molecule:l-lactate dehydrogenase; |
PDBTitle: structure determination of the allosteric l-lactate dehydrogenase from2 lactobacillus casei at 3.0 angstroms resolution
|
| Resolution | 3.00 Å |
|
 |
|   |   |
95 | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | |
|
. | . | . | . | . | . | 130 | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 |
| Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . | . |  |  |  |  |  |  |
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
C | P | S | L | R | P | V | V | I | V | G | G | G | G | Q | M | G | R | L | F | E | K | M | L | T | L | S | G | Y | . |
. |
Q | V | R | I | L | E | Q | H | D | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
W | D | R | A | A | D | I | V | A | D | A | G | M | V | I | V | S | V |
| Query Conservation |   |
  |   |   |   |   |   |
|   |
|
|
|
|   |
|   |
|
|   |   |   |
|   |   |
|   |   |   |
|   | . | . |   |
|   |
|   |
|   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|
|
|
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
  |   |   |   |   |
|
|   |
|
|
| . |
|
|   |
|
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |
|
|   |
|   |
|   |   |   |   |   |   |   |
|   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |
|
|
|   |
|
|
|
|
|
|
|
|
|
| Template Sequence |   |
D | K | D | H | Q | K | V | I | L | V | G | . |
D | G | A | V | G | S | S | Y | A | F | A | M | V | L | Q | G | I | A | Q | E | I | G | I | V | D | I | F | K | D | K | T | K | G | D | A | I | D | L | S | N | A | L | P | F | T | S | P | K | K | I | Y | S | A | E | Y | S | D | A | K | D | A | D | L | V | V | I | T | A |
| Template Known Secondary structure |   |
|
|
| S |
|
|  |  |  | S |
| . | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
| S | S |  |  |  |
|
| S |
| S |  |  |  |  |  |  |  |  |  |  | T | T | S |
| T | T | S |
|
|
|
| B |
|
|
| T | T | T | T | T | S | S |
| S |  |  |  |
| B | T |
| Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |
| . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |
|
|
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
17 | . | . | 20 | . | . | . | . | . | . | . | |
. | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . |
|   |
|   |   |
151 | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | |
|
|
. | . | . | . | . |
| Predicted Secondary structure |   |
|  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
| . | . | . |
|  |  |  |
|
| Query SS confidence |   |
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
| Query Sequence |   |
P | I | H | V | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
T | E | Q | V | I | G | K | L | P | P | L | P | K | D | C | I | L | V | D | L | A | S | V | K | N | G | P | L | Q | A | M | L | V | A | H | D | G | . |
. |
. |
P | V | L | G | L |
| Query Conservation |   |
|
|   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |
|   |   |   |   |   |
|   |   |   |   |
|
|   |
|
|   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . |   |   |
|
|   |
| Alig confidence |   |
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
| Template Conservation |   |
|   |   |   |   |   |
|   |   |
|   |   |
|   |   |   |
|   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |
|   |
|   |
|
|   |   |
|
|
|   |
|   |   |   |   |   |   |   |
|   |
|
|   |   |   |   |
|
|
|
|   |
| Template Sequence |   |
G | A | P | K | Q | P | G | E | T | R | L | D | L | V | N | K | N | L | K | I | L | K | S | I | V | D | P | I | V | D | S | G | F | N | L | I | F | L | V | A | A | N | P | V | D | I | L | T | Y | A | T | W | K | L | S | G | F | P | K | N | R | V | V | G | S |
| Template Known Secondary structure |   |
|
|
| S | S |
| S | S | S |
| S | T |  |  |  |  | T | T | S | T | T | T | T | T | T |  |  |  |  |  | T | T |
|
| S |  |  |  |
| B |
| S | S |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| T | T | T |  |  |
|
|
| Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
99 | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|