HHsearch 1.5 NAME batch____ FAM FILE query COM //bmm/www/servers/phyre2/HH/hhmake -i /bmm/www/servers/phyre2/public_html/phyre2_output/5b22f41c30a74fff/query.a3m -o /bmm/www/servers/phyre2/public_html/phyre2_output/5b22f41c30a74fff/query.hhm DATE Fri Jan 27 04:20:39 2012 LENG 122 match states, 122 columns in multiple alignment FILT 13 out of 15 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.7 EVD 0.4242 0.1047 SEQ >ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHCHHHHHHHHHHCCCCCHHEEECCCEEEECCHHHHHCCCCCC CCCCCCCHHHHHHHHHHHHHCC >ss_conf 9704615999999999976765431011445886684202214334878898899985099999999620799800166158727430122120046527 7774111023578999873079 >Consensus mxxxxxxxxxxxxxxxxxsxxxxxxxxxxixsPxxGViCDkxiCxdsxGvSxxlTxxYlGxxAaxxlxxxgdfdxtxFtlsNGvxCDxxexxCxxDryxx xxGxrsxxvxxxxtkxlFxxrx >batch____ MNMMRIFYIGLSGVGMMFSSMASGNDAGGLQSPACGVVCDPYICVNSDGISPELTRKYLGEKAAENLQSLQGYDPSEFTFANGVFCDVKEKLCRDDRYFG VDGKRSGKINQTTTKMLFMCRE >UniRef50_B6XFH7(1-116:118) Putative uncharacterized protein n=2 Tax=Providencia RepID=B6XFH7_9ENTR E=6e-39 s/c=1.39 id=40% cov=95% MNLKAVCLVGFAIAALPM--LSSAKSTSALKSPEKNVLCDKYVCFSaKDGVSTELTKKYLGDKRAKVIEQGGDFDKTAMTFANGIFCDINEQKCHIDRYF DADGKRSAVSKEYTHKLF----- >UniRef50_D2TVR8(1-121:123) Conserved hypothetical phage protein n=1 Tax=Arsenophonus nasoniae RepID=D2TVR8_9ENTR E=2e-38 s/c=1.31 id=46% cov=95% --MMNIFmnkfiLLLLSVILFFYSAFTLAISSKLLISPEPSVLCDRYICVDSiTGVSVSLTEKYLGKKQANRLLSQGLFDKTAFTFDNGVFCDIKERKCY IDRYFNEKGQRSKVCQQYTEKLF----- >UniRef50_B7H1V7(1-119:119) Fels-1 Prophage Protein-like family protein n=9 Tax=Acinetobacter RepID=B7H1V7_ACIB3 E=2e-34 s/c=1.23 id=37% cov=98% MKNSNFIVVFIGSICFAFSANTLAQNTAAVFSPKRGVVCDKYICADKKGVSKSLTNQYLGAKKAKQAFSQGDFDTSAFTFSNGVFCDTTTKLCHVNKFFE -NGHRS-RVDKKMTDKIFKNR- >UniRef50_D0Z7R2(30-117:119) Putative prophage protein n=2 Tax=Enterobacteriaceae RepID=D0Z7R2_EDWTE E=1e-25 s/c=1.33 id=51% cov=73% ------------------------------RSPRPGVLCDRYLCADSQGISRALTTQYLGRAATQRLFAQGDFDLTQFTFANGIFCDTHERLCRADRYYG PDGKHSGAVSAKYTALLF---- >UniRef50_Q7N9E7(1-115:116) Similar to unknown protein YcgJ of Escherichia coli n=2 Tax=Photorhabdus RepID=Q7N9E7_PHOLL E=2e-13 s/c=0.67 id=43% cov=61% --------------------------AANIFFPEKGVVCDKkgKYCSDQQGLSLKLTERYLGKKAVKRLKKeigdGKDVDFSSYTLSNGVHCESKEKKCY KDRYY----------------------- >UniRef50_Q1Z548(9-114:128) Putative uncharacterized protein n=1 Tax=Photobacterium profundum 3TCK RepID=Q1Z548_PHOPR E=1e-08 s/c=0.57 id=35% cov=66% ------------------ASAAMTELAPNIYSPDKGVICDKKagFCVDSFGISMAFTQEYLGDDAQKEMMKvietvgTKNFDTTRYSLSNGVYCDALKQG CFKSRF------------------------ >UniRef50_A3YV60(1-103:256) Putative uncharacterized protein n=1 Tax=Synechococcus sp. WH 5701 RepID=A3YV60_9SYNE E=9e-08 s/c=0.57 id=37% cov=57% -----------------------------LDFPSSGVICDRavRICYDSNGVSLPLTRRYFDRRAEQNLQRQlsGRSIPRDFQLSGGEVCDLRRQICWED GW------------------------ >UniRef50_B5INJ8(46-133:252) Putative uncharacterized protein n=1 Tax=Cyanobium sp. PCC 7001 RepID=B5INJ8_9CHRO E=6e-17 s/c=1.01 id=39% cov=70% ----------------------------GVSSPSDGVICDAAAqsCYTRDGVSLQDTRRYFGPQAERRLWVdlIGRRPSQEFSLSNGTRCDLREETCWSD -----NGGR-RRPEQTMTRDLF---- >UniRef50_A5GMB4(11-114:245) Putative uncharacterized protein SynWH7803_1653 n=2 Tax=Synechococcus RepID=A5GMB4_SYNPW E=9e-17 s/c=0.85 id=34% cov=70% ----------------------------GITYPKAGIVCDQVgqVCYDSYGPSIGITKIYFGEFAADRLsQNRRGSTSNDFRLSSGQACSIQKRKCWDDG WSQAN------VAKGLTKQLF---- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 1895 0 0 N 2 * * * * * * * * 1573 * * 591 * * * * * * * * 2 0 * * * * * * 1895 0 0 M 3 * * * * * * * * * 2030 1023 1927 * * * * * * * * 3 0 * * * * * * 2076 0 0 M 4 * * * * * * * * 2030 * 1023 * * * * 1927 * * * * 4 0 * * * * * * 2076 0 0 R 5 2030 * * * * * * * * * * 1013 * * 1947 * * * * * 5 0 * * * * * * 2076 0 0 I 6 * * * * 1927 * * 1023 * * * * * * * * * 2030 * * 6 0 * * * * * * 2076 0 0 F 7 * 2030 * * 1023 * * 1927 * * * * * * * * * * * * 7 382 2104 * 2322 322 * * 2076 1000 0 Y 8 * * * * * * * * * 1066 * * * * * * * 1927 * 1947 8 0 * * * * * * 2076 0 0 I 9 * * * * * * * 1947 * 2104 * * * * * * * 977 * * 9 0 * * * * * * 2076 0 0 G 10 * * * * 1927 987 * * * 2104 * * * * * * * * * * 10 0 * * * * * * 2076 0 0 L 11 * * * * 2030 * * 1927 * 1023 * * * * * * * * * * 11 0 * * * * * * 2076 0 0 S 12 2030 * * * * 1927 * * * * * * * * * 1023 * * * * 12 0 * * * * * * 2076 0 0 G 13 * * * * * 1947 * 2030 * * * * * * * 1927 * 2104 * * 13 0 * * * * * * 2076 0 0 V 14 2030 * * * * * * 1013 * * * * * * * * * 1947 * * 14 0 * * * * * * 2076 0 0 G 15 2030 1927 * * * 1947 * * * 2104 * * * * * * * * * * 15 0 * * * * * * 2076 0 0 M 16 * * * * 1013 * * * * 2030 1947 * * * * * * * * * 16 0 * * * * * * 2076 0 0 M 17 1927 * * * 2104 * * * * * 1947 * 2030 * * * * * * * 17 0 * * * * * * 2076 0 0 F 18 * * * * 937 * * * * * 2030 * * * * * * * * 2104 18 405 * 2030 * * * * 2076 0 0 S 19 1798 * * * * * * * * * * * * * * 489 * * * * 19 0 * * * * * 0 2121 0 1000 S 20 1080 * * * * * * * * * * * * * * 924 * * * * 20 0 * * * * 0 * 2121 0 1000 M 21 2012 * * * 2465 * * * * 2465 2345 2374 * * * * * * * * 21 0 * * * * * * 2251 0 0 A 22 1169 * * * * * * * * * * * * * * 2465 1419 * * * 22 0 * * * * * * 2251 0 0 S 23 * * * * * * * * * 1419 2012 * * * * 1404 * * * * 23 0 * * * * * * 2251 0 0 G 24 849 * * * * 2345 * * * * * * * * * * 2012 * * * 24 0 * * * * * * 2251 0 0 N 25 * * * 2012 * * * 2465 2465 * * 2345 * 2374 * * * * * * 25 0 * * * * * * 2251 0 0 D 26 * * 2345 * * * * * * 2012 * 2374 * * * 1465 * * * * 26 0 * * * * * * 2251 0 0 A 27 924 * * * * * * * * * * * * * * 2721 1638 * * * 27 0 * * * * * * 2291 0 0 G 28 1594 * * * * 2606 * * 2721 * * * 2361 * * 2662 * * * * 28 0 * * * * * * 2291 0 0 G 29 2107 * * * * 1278 * * * 3246 * 2000 * * * * * * * * 29 0 * * * * * * 2826 0 0 L 30 * * * * * * * 1442 * 1196 * * * * * * * 2355 * * 30 0 * * * * * * 3036 0 0 Q 31 * * 3281 * 2583 * * 3809 3625 * * * * 3833 2826 3335 3040 * * 2777 31 0 * * * * * * 3055 0 0 S 32 * * * * 2480 * * * * * * * * * * 510 * * * 3077 32 0 * * * * * * 3042 0 0 P 33 * * * * * * * * * * * * 0 * * * * * * * 33 0 * * * * * * 3042 0 0 A 34 3107 * 3782 1790 * * * * 2352 * * * * * 4011 2354 * * * 3866 34 0 * * * * * * 3042 0 0 C 35 2553 3962 3384 * * * * * 1748 * * * 2361 * 3691 3325 * * * * 35 0 * * * * * * 3042 0 0 G 36 * * * * * 224 * * * * * 3696 * * * 3913 * * * * 36 0 * * * * * * 3042 0 0 V 37 * * * * * * * 3077 * * * * * * * * * 182 * * 37 0 * * * * * * 3042 0 0 V 38 * * * * * * * 1570 * 1627 * * * * * * * 1559 * * 38 0 * * * * * * 3042 0 0 C 39 * 0 * * * * * * * * * * * * * * * * * * 39 0 * * * * * * 3042 0 0 D 40 * * 0 * * * * * * * * * * * * * * * * * 40 0 * * * * * * 3042 0 0 P 41 3384 * * * * * * * 1414 * * * 3962 3077 1530 * * * * * 41 285 2480 * 1000 1000 * * 3042 1582 0 Y 42 3384 * * * * * 3917 * 2180 * * * * * 3325 * * 3077 * 1325 42 434 1944 * 1000 1000 * * 3042 1688 0 I 43 3384 * * * 2824 * * 1700 * 2963 * * * * * * * 2014 * 3655 43 145 3384 * 1000 1000 * * 3042 1000 0 C 44 * 0 * * * * * * * * * * * * * * * * * * 44 0 * * * * * * 3042 0 0 V 45 1957 * * * 3696 * * * * * * * * * * 3655 * 1879 * 1671 45 0 * * * * * * 3042 0 0 N 46 * * 521 * * * * * * * * 2939 * * * 3696 3384 * * * 46 116 3696 * 0 * * * 3042 1000 0 S 47 * * 3082 * * * * * 2694 * * * * 3655 3384 857 * * * * 47 99 3913 * 0 * * * 3042 1000 0 D 48 * * 2077 * 2824 * * * 3691 * * 3325 * 1946 * * 3913 * * 3077 48 0 * * * * * * 3042 0 0 G 49 * * * * * 0 * * * * * * * * * * * * * * 49 0 * * * * * * 3042 0 0 I 50 * * * * * * * 1375 * 3655 * * 3077 * * * * 1264 * * 50 0 * * * * * * 3042 0 0 S 51 * * * * * * * * * * * * * * * 0 * * * * 51 0 * * * * * * 3042 0 0 P 52 * * * * * * * 3077 3691 1863 2824 * 3962 * 2473 * 3696 3913 * * 52 0 * * * * * * 3042 0 0 E 53 1970 * * 2823 * 3077 * * 3655 * * * 2591 3384 * 2798 * * * * 53 0 * * * * * * 3042 0 0 L 54 * * 3384 * 2824 * * 3077 * 634 * * * * * * * * * * 54 0 * * * * * * 3042 0 0 T 55 * * * * * * * * * * * * * * * * 0 * * * 55 0 * * * * * * 3042 0 0 R 56 * * * 1922 * * * * 2353 * * 3691 * 2824 1945 * 4011 * * * 56 0 * * * * * * 3042 0 0 K 57 * * * 2824 * * * 3077 1868 * * * * 2842 1613 * * * * * 57 0 * * * * * * 3042 0 0 Y 58 * * * * * * 3917 * * * * * * * * * * * * 99 58 0 * * * * * * 3042 0 0 L 59 * * * * 1671 * * * * 544 * * * * * * * * * * 59 0 * * * * * * 3042 0 0 G 60 * * 3325 * * 152 * * * * * * * * * * * * * * 60 0 * * * * * * 3042 0 0 E 61 3691 * 2195 2452 * * * * 2339 * * * 2626 * 2627 * * * * * 61 0 * * * * * * 3042 0 0 K 62 4011 * 3782 3866 3077 * * * 1456 * * * * 2626 2720 * * * * * 62 0 * * * * * * 3042 0 0 A 63 460 * * * * * * * 3691 * * * * 3913 3696 * * 4268 * * 63 0 * * * * * * 3042 0 0 A 64 939 * * 2354 * * * * * * * * * 2824 * * 4011 3655 * * 64 0 * * * * * * 3042 0 0 E 65 4268 * 3077 3962 * * * * 1414 * * 3913 * 2627 3384 * 3917 * * * 65 0 * * * * * * 3042 0 0 N 66 * * * 2824 * * * * 3082 * * 2608 * 3691 1244 * * 3696 * * 66 0 * * * * * * 3042 0 0 L 67 2951 * * * * * * 2779 * 616 3782 * * * * * * * * * 67 182 3077 * 0 * * * 3042 1000 0 Q 68 * * * 3696 1957 * * * 3655 3913 2824 * * 1824 * * * * 3384 * 68 0 * * * * * * 3042 0 0 S 69 4011 * * * * * * * 2180 * * 3077 * 3696 3325 1617 * 3384 * * 69 411 2013 * 1976 423 * * 3042 1891 0 L 70 * * * * * 2676 * 3384 * 3962 * * 3917 1484 3077 * 3782 3866 * * 70 152 3325 * 1000 1000 * * 3042 1000 0 Q 71 * * * * * 745 * 3866 2717 * * * * 3962 3077 * * * * * 71 0 * * * * * * 3042 0 0 G 72 * * 1051 * * 2452 * * * 3913 * 3782 * * 2354 * * * * * 72 102 3866 * 2585 263 * * 3042 1000 0 Y 73 * * * * 883 * * * * * * * * * 3384 2195 * 3655 * 3962 73 0 * * * * * * 3042 0 0 D 74 * * 544 * * * * 3325 * * * * 3384 * * * 3077 * * * 74 0 * * * * * * 3042 0 0 P 75 * * * * 3655 * * * 2800 2963 * * 2212 * * 2222 2193 * * * 75 0 * * * * * * 3042 0 0 S 76 * * * * * * * * * * * 3077 * 3384 3325 2178 1105 * * * 76 0 * * * * * * 3042 0 0 E 77 2178 * 2195 1847 * * * * * * * * * 4011 2824 3655 * * * * 77 0 * * * * * * 3042 0 0 F 78 * * * * 510 * * * * * 3696 * * * * * * * * 2180 78 0 * * * * * * 3042 0 0 T 79 * * * * * * * * * * * * * 3325 3077 1722 1064 * * * 79 0 * * * * * * 3042 0 0 F 80 * * * * 1104 * * * * 903 * * * * * * * * * * 80 0 * * * * * * 3042 0 0 A 81 1637 * 3913 * * * * * * * * * * * * 708 * * * * 81 0 * * * * * * 3042 0 0 N 82 * * * * * 3325 * * * * * 355 * * * 3077 * * * * 82 0 * * * * * * 3042 0 0 G 83 * * * * * 0 * * * * * * * * * * * * * * 83 0 * * * * * * 3042 0 0 V 84 * * * 3325 * * * 2845 * * * * * 3077 * * 3384 871 * * 84 0 * * * * * * 3042 0 0 F 85 3077 * * * 1104 * 3655 * * * * * * * 3384 * * 3325 * 2824 85 0 * * * * * * 3042 0 0 C 86 * 0 * * * * * * * * * * * * * * * * * * 86 0 * * * * * * 3042 0 0 D 87 * * 318 3655 * * * * * * * * * * * 3077 * * * * 87 0 * * * * * * 3042 0 0 V 88 3782 * * * * * * 1932 * 2354 * * * * * 2757 2842 2456 * * 88 0 * * * * * * 3042 0 0 K 89 * * * * * * 4011 * 1608 2824 * 3696 * 3077 2354 * 3691 * * * 89 0 * * * * * * 3042 0 0 E 90 * * * 829 * * * * 1944 * * * * * 3325 * 3691 * * * 90 0 * * * * * * 3042 0 0 K 91 * * * 3384 * * * * 2178 * * * * 1652 1454 * * * * * 91 0 * * * * * * 3042 0 0 L 92 * * * * * 2824 * 3325 1550 1636 * * * * * * 3384 * * * 92 0 * * * * * * 3042 0 0 C 93 * 0 * * * * * * * * * * * * * * * * * * 93 0 * * * * * * 3042 0 0 R 94 * * * * 2824 * 2694 * * * * * * * 2033 * * * 1671 2778 94 0 * * * * * * 3042 0 0 D 95 4011 * 2092 3325 * * * 2800 2180 * * 3917 * * * 3384 * 3691 * * 95 0 * * * * * * 3042 0 0 D 96 * * 484 * * * 3917 * * * * 3691 * * * 2824 * * * * 96 145 * 3384 * * * * 3042 0 0 R 97 * * * * * 1992 * * 3600 * * * * * 586 * * * * * 97 0 * * * * * 0 2902 0 1000 Y 98 * * * * 2083 * * * * * * * * * * * * * 1992 964 98 0 * * * * * 0 2902 0 1000 F 99 * * * * 1288 * * * * * * * * * * 2396 * * * 1320 99 0 * * * * * 0 2484 0 1000 G 100 * * 2905 2923 * 1234 * * * * * 3067 * 2395 * * * * * * 100 204 * 2923 * * * 0 2412 0 1000 V 101 737 * * 2866 * * * * * * * * 2954 * * * * 2901 * * 101 0 * * * * 0 * 2281 0 1522 D 102 * * 1054 * * * * * 3244 * * 1276 * * * * * * * * 102 249 * 2658 * * * * 2641 0 0 G 103 * * * * * 0 * * * * * * * * * * * * * * 103 0 * * * * * 0 2375 0 1000 K 104 * * * * * 2519 2861 * 1112 * * * * 2150 * * * * * * 104 0 * * * * * 0 2375 0 1000 R 105 * * * * * * 3140 * * * * * * * 174 * * * * * 105 277 * 2519 * * * 0 2375 0 1000 S 106 * * * * * * * * * * * * * * * 0 * * * * 106 264 * 2582 * * 1000 1000 2086 0 1476 G 107 2663 * * * * 979 * * 2833 * * * * * 2362 * * * * * 107 0 * * * * 937 1066 2240 0 1582 K 108 1667 * * * * * * * 3090 * * * * * 1680 * * 1967 * * 108 0 * * * * 0 * 2375 0 1000 I 109 * 3244 * * * * * 3383 * * * * 2835 * * 3087 * 887 * * 109 0 * * * * * * 2641 0 0 N 110 2658 * 3128 2835 * * * * 3087 * * 2435 * 3244 * 2483 * * * * 110 0 * * * * * * 2641 0 0 Q 111 3356 * * 3087 * * * * 1466 * * * * 1550 3622 * * * * * 111 0 * * * * * * 2641 0 0 T 112 * * * * * 2658 * * 1731 * * * * * 3622 * 2083 * * 2164 112 0 * * * * * * 2641 0 0 T 113 * * * * * * * * * 2658 1974 * * * * * 1648 * * 1899 113 0 * * * * * * 2641 0 0 T 114 * * * 3244 * * 3087 * * * * * * * * * 364 * * * 114 0 * * * * * * 2641 0 0 K 115 3356 * 3128 3622 * * * * 1067 * * * * * 2125 * * * * * 115 0 * * * * * * 2641 0 0 M 116 * * 2835 * * * * * 3128 1025 3383 * * 2658 * * * * * * 116 0 * * * * * * 2641 0 0 L 117 * * * * 2164 * * 3128 * 594 * * * * * * * * * * 117 0 * * * * * * 2641 0 0 F 118 * * * * 0 * * * * * * * * * * * * * * * 118 0 * * * * * * 2390 0 0 M 119 * * * * * * * * 1024 * 976 * * * * * * * * * 119 0 * * * * * * 1537 0 0 C 120 * 976 * * * * * * * * * 1024 * * * * * * * * 120 0 * * * * * * 1537 0 0 R 121 * * * * * * * * * * * * * * 0 * * * * * 121 0 * * * * * * 1537 0 0 E 122 * * * 0 * * * * * * * * * * * * * * * * 122 0 * * 0 * * * 1000 0 0 //