HHsearch 1.5 NAME batch____ FAM FILE query COM //bmm/www/servers/phyre2/HH/hhmake -i /bmm/www/servers/phyre2/public_html/phyre2_output/5af2a46756a62a98/query.a3m -o /bmm/www/servers/phyre2/public_html/phyre2_output/5af2a46756a62a98/query.hhm DATE Sun Jan 8 09:10:51 2012 LENG 114 match states, 114 columns in multiple alignment FILT 106 out of 124 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.8 EVD 0.4091 -1.4014 SEQ >ss_pred CCCCHHHHHCCCCCCCCHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC CCCCCCCCCCCCCC >ss_conf 9421333101642334000178876640218753554899999999999999999999999998877869970455798999999999999999995188 99999989999999 >Consensus xxxxxxitxxgxxxxxxtxlxPxtxxdxWxgxxWVxDxxaxxxxxixxAexxkxxLlxxAxxxIxxlqdavxLgxaltdxExxxLxaWkxYrvxLxrvDx sxapDIxWPxxPex >batch____ MILDRHITSRGYVCMRPATIAPLTPYDKWDGEKWVTDTEAQHSVAVDAAEAQRQSLIDTAMASISLIQLKLQAGRKLMQAETSRLNTVLDYIDAVTATDT STAPDVIWPELPEE >UniRef50_Q7N2R7(54-170:170) Similar to phage tail fiber assembly protein n=1 Tax=Photorhabdus luminescens subsp. laumondii RepID=Q7N2R7_PHOLL E=1e-10 s/c=0.58 id=23% cov=97% --ISKDISSLFPIHLSVAELAPEdVPTEIIITDGWFFDGEKiiKRIYTLEEQRQqeknQKSEKMIAANEVIQPLQDAIDLGIATNK-EKALLLEWKRYRV SLNRIDTSLASEIIWPEQPK- >UniRef50_Q0BEK6(77-187:253) Bacteriophage-acquired protein n=3 Tax=Burkholderia RepID=Q0BEK6_BURCM E=6e-06 s/c=0.47 id=24% cov=80% ---------------------PSDEY-VWRDGAWVVDEAIVAERVRAAAMSDFYARMEKARQQ-NLGKMDARAAGLLSDVEEAMFDAWAAYQVALVRvVD LPTFPnDIVWPDEPD- >UniRef50_B6Z9I1(113-173:174) Putative phage tail fiber assembly protein n=1 Tax=Kluyvera phage Kvp1 RepID=B6Z9I1_9CAUD E=6e-05 s/c=0.80 id=31% cov=54% -------------------------------------------------ENQKARLIAQASTKIDQYADFIELG---EEGLEGILKAWRKYRLAVFKVDL SVLPFYDWPEKPE- >UniRef50_B4TI69(63-174:176) Putative phage tail fiber assembly protein n=13 Tax=Salmonella enterica subsp. enterica RepID=B4TI69_SALHS E=5e-12 s/c=0.65 id=23% cov=61% --------------------------------------------YVALATAERDRRMASVTSKINQLMEAQD-DSDITDAELVELSDLREVRTKLRRLDL TGAPDIDWPEVPD- >UniRef50_C6DE09(98-204:206) Tail assembly chaperone gp38 n=5 Tax=Enterobacteriaceae RepID=C6DE09_PECCP E=3e-24 s/c=1.05 id=23% cov=95% ----QKITDIGELPANQTLLVPTSEFDKWEDGKWVTDLEAQRQALIANKKVELNTKLSQASERIQVLSDAVELNLA-TEEEKNELKAWKTYRLQLSRVDV NSFEEVL-PNLPN- >UniRef50_B1JM08(47-112:116) Putative uncharacterized protein n=1 Tax=Yersinia pseudotuberculosis YPIII RepID=B1JM08_YERPY E=4e-09 s/c=0.95 id=17% cov=57% ------------------------------------------------ARDIKAQALTEAYIQVTALQAAVSTQLA-TPEEITELVLWQTYLVLMNRVVP DSPLDIVWPKKPE- >UniRef50_Q66W74(60-140:142) Putative phage tail fiber assembly protein n=1 Tax=Klebsiella pneumoniae RepID=Q66W74_KLEPN E=1e-13 s/c=0.96 id=32% cov=71% --------------------------------AWVDKSSPTQEQLVTQAAVKQKRLITEANEYIGLKQWAGKASLGrLSDDERAQYNAWLDYLDELEAVK PEDAPDIIWPTPP-- >UniRef50_D2TYN1(45-140:140) Phage tail assembly protein n=1 Tax=Arsenophonus nasoniae RepID=D2TYN1_9ENTR E=3e-11 s/c=0.73 id=20% cov=71% -------------------------FPKWEEEK------ISKRQLIEDTKEKINFLLKEVKNVTQIWQTQLTLGI-ITDSDKSKLTDWMIYAQKLQQIDL KNINDISWPSKP-- >UniRef50_Q87ZM7(88-154:180) Tail fiber assembly domain protein n=3 Tax=Pseudomonas syringae group RepID=Q87ZM7_PSESM E=5e-05 s/c=0.73 id=17% cov=53% -----------------------------------------------------TARIDELVNQYEELQDAVSLDMATDDQRKalpavrAEIDAYRLYRVQ LGQLDTkpGYPLDFEWPTPP-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 1000 0 0 I 2 * * * * * * * 0 * * * * * * * * * * * * 2 0 * * * * * * 1000 0 0 L 3 * * * * * * * 1013 * 987 * * * * * * * * * * 3 0 * * * * * * 1690 0 0 D 4 * * 987 * * * * * * * * * * * * 1013 * * * * 4 0 * * * * * * 1690 0 0 R 5 * * * 2213 * * * * 1791 * * * * 1847 2202 * * * * * 5 0 * * * * * * 2310 0 0 H 6 * * 2284 1769 * * 2774 * 2510 * * * * * 2477 * * * * * 6 0 * * * * * * 2759 0 0 I 7 * * * * * * * 326 * * * * * * * * * 2306 * * 7 0 * * * * * * 3260 0 0 T 8 * * * * 3322 * * * * * * * * * * 2235 540 * * * 8 0 * * * * * * 3421 0 0 S 9 1948 * 3506 3277 * * * * * * * * * 2465 * 1762 * 3759 * * 9 0 * * * * * * 3421 0 0 R 10 * * * * * * * 3506 * 1297 3347 * 1630 * 3580 * * * * * 10 0 * * * * * * 3421 0 0 G 11 * * * * 3246 161 * * * * * * * * * * * * * * 11 0 * * * * * * 3490 0 0 Y 12 3796 * 2884 1978 * * * * 5591 * * * 1851 * * * * 3334 * 2821 12 0 * * * * * * 3490 0 0 V 13 * * * * * * * 2170 * 1601 * * 3334 * * * 3928 3720 * 2269 13 0 * * * * * * 3490 0 0 C 14 3796 3720 * * * * 3246 * * 3928 * * 726 * * 3708 * * * * 14 0 * * * * * * 3490 0 0 M 15 2731 * 3708 1916 * * * 3928 3380 3246 3720 * * 3796 * 3430 * * * * 15 0 * * * * * * 3490 0 0 R 16 * * * 3430 * 3919 * * 3928 * * 1257 * 3708 2514 3246 * * * * 16 0 * * * * * * 3490 0 0 P 17 * * * * * * * * 3380 1790 * * 2821 3566 * * 2884 1982 * * 17 0 * * * * * * 3490 0 0 A 18 2464 * * * * * * * * * * * * * * 3928 409 * * * 18 98 * 3928 * * * * 3490 0 0 T 19 5516 * * 3193 * * * * * 1504 * * * * * 3621 1571 3347 * * 19 0 * * * * * 0 3421 0 1000 I 20 * * * * * * * 2401 3922 618 * * * * * 4333 * 4515 * * 20 0 * * * * * 0 3942 0 1000 A 21 1393 * * * 4537 * * * * * * * * 2055 * 2268 * 2967 * * 21 0 * * * * * 0 4109 0 1000 P 22 * * * * 4409 * * * * * * * 70 * * * * * * * 22 51 * 4856 * * * 0 4521 0 1000 L 23 3306 4257 4443 4336 * 4151 * * 3356 3321 4521 5244 3509 4936 * 2474 3269 5446 * * 23 155 4336 4257 0 * 0 * 4487 1000 1491 T 24 * * 3940 * * 2356 4804 * * * * * * * 4853 2187 1288 4647 * * 24 0 * * * * 0 * 4619 0 1000 P 25 3513 * 5199 1482 * 5477 * * 4974 * * * 1767 5154 3011 5208 * * * * 25 0 * * * * * * 4735 0 0 Y 26 * * * * 1231 * * * * 4744 * 7397 * * 4574 * 4915 * 3628 1416 26 79 * 4233 * * * * 4825 0 0 D 27 * 7150 858 3955 * * 2454 * 5501 * * 5128 3734 4735 * * * * * 5011 27 0 * * * * 0 * 4755 0 1079 K 28 3968 * * 3493 5123 * * 4030 1561 * * * * 4416 3205 * 4767 2143 * * 28 0 * * * * * * 4838 0 0 W 29 * * * * * * * 5005 5276 * * * * * 5637 * * * 150 5535 29 0 * * * * * * 4860 0 0 D 30 * * 1432 3739 * * * 3335 * 5492 * 2756 * 5399 2994 * 3269 4963 * * 30 28 5694 * 1000 1000 * * 4860 1000 0 G 31 4584 * 2274 4172 * 676 * * * * * 4527 * * * * 5215 * * * 31 47 * 4963 * * * * 5016 0 0 E 32 5566 * 2998 2056 * 1819 * * 3005 * * 5305 * 5491 * 5968 3113 * * 5257 32 0 * * * * 0 * 5015 0 1073 K 33 1768 * 3884 4419 * 3308 * * 1870 * * 5268 * 4670 4094 5579 4254 5629 * * 33 44 * 5066 * * * * 5098 0 0 W 34 * * * * 4363 * * * * * * * * * * * * * 72 * 34 28 5700 * 2807 222 * 0 5099 1000 1000 V 35 5349 * * 5322 4442 * * 4107 * 5362 * * * 4513 * 4884 3616 593 * * 35 0 * * * * * 0 5099 0 1000 T 36 * * 4308 * 3458 * * 3358 3732 3461 * 6004 5382 * * * 1314 2706 * * 36 24 5934 * 1585 585 * 0 5017 1000 1000 D 37 * * 412 * * * * 5624 5049 * * 3538 4002 * * 5094 * * * 5639 37 0 * * * * * 0 5017 0 1000 T 38 3686 * 3814 2728 * 3568 * 4642 3638 3303 * 3502 5813 4690 5134 3975 2823 5968 * * 38 0 * * * * * 0 5064 0 1000 E 39 2996 * 3877 1499 * 6180 * 6055 5011 * * 5867 5670 2866 5238 2797 4362 * * * 39 78 5978 4765 2585 263 0 * 5189 1000 1000 A 40 688 * * * * * * 3860 4147 3772 * * 4345 4409 * 4721 5506 5344 * * 40 46 5005 * 1419 676 * 0 5176 1280 1000 Q 41 6111 5999 * 2938 * * * 4480 4255 2975 * * 5506 1720 3834 4380 4457 3214 * 5792 41 65 * 4509 * * * 0 5176 0 1000 H 42 3300 * * 4386 * * 2794 5606 1650 4911 * * 5466 3514 2781 4486 * 4892 * * 42 0 * * * * * 0 5004 0 1723 S 43 2295 * 4602 1662 * * * 5890 * 4200 * 4687 5875 3667 3542 3677 4282 5810 * * 43 0 * * * * 913 1093 5004 0 1723 V 44 1841 * * 2409 4431 6328 4790 5677 * 5343 * * * 3209 2839 4785 6079 5656 * 3745 44 0 * * * * 0 * 5093 0 1000 A 45 3496 * 4051 6667 4136 * 4098 4574 3930 2010 * 5419 * 2994 5709 * 3797 4817 * 3401 45 42 * 5139 * * * * 5270 0 0 V 46 4749 * * 6099 * * * 1586 * 3947 * * 5830 4733 3260 5969 4377 1675 * 6197 46 0 * * * * * 0 5175 0 1448 D 47 1483 * 3527 3101 * 6226 * 6692 4343 * * 6335 * 2665 5338 3481 3966 * * 5778 47 0 * * * * * 0 5224 0 1448 A 48 1899 * 4254 2376 * * 6560 5936 3777 5163 * 4110 * 2024 * 5575 6357 5498 * * 48 29 5654 * 2693 242 0 * 5258 1621 1448 A 49 267 * * * 4963 6150 5816 * 6271 6146 6299 * * 6868 6047 * 4871 7122 * * 49 9 7304 * 0 * * * 5286 1000 0 E 50 4376 * 4659 1307 * * * 6451 3311 4220 3709 4519 * 4181 3870 6024 4395 4803 * * 50 13 6849 * 2585 263 * * 5281 1000 0 A 51 2215 * 4600 3404 6659 4380 5530 7020 5481 4301 * 4122 * 2302 5159 3446 4340 4804 * 5413 51 12 6964 * 2000 415 * * 5291 1000 0 Q 52 4623 * 5258 1804 * * 6476 4383 2002 7018 6336 5844 * 2486 4404 * 4636 4851 * * 52 0 * * * * * * 5290 0 0 R 53 6845 6722 5025 * 3728 * * 4727 875 4153 * * * 4806 2318 * * * * * 53 18 6370 * 1000 1000 * * 5294 1000 0 Q 54 3082 * 3208 3609 * * * 5711 4138 5932 * 3183 * 2506 4130 2928 3672 6287 * 4899 54 0 * * * * * * 5316 0 0 S 55 2250 6244 5818 4960 5027 6130 * 4413 3744 6236 5177 6765 * 2380 2738 3787 4203 5117 * 6306 55 0 * * * * * * 5316 0 0 L 56 5054 * 6717 5473 6937 * * * 5433 624 * * * * 2017 * * * 6573 * 56 7 * 7673 * * * * 5405 0 0 I 57 * * 6424 * * * * 2031 5368 1314 2561 * * 5928 3144 6936 6645 * * * 57 0 * * * * 0 * 5420 0 1000 D 58 2180 * 2718 2910 * 6351 * 5209 3834 7210 * 3834 * 4046 5249 2632 4542 5892 * * 58 0 * * * * * * 5413 0 0 T 59 4190 * 4193 1742 * 6094 * 4219 4760 3768 5484 4882 * 2767 4870 4545 3753 5451 5478 6242 59 0 * * * * * * 5413 0 0 A 60 270 * * * * * * * * 5794 * * * * * * 6537 3142 * 5141 60 0 * * * * * * 5413 0 0 M 61 5088 6652 3580 4002 * 6446 5742 * 4567 * 5407 2655 * 5217 3281 2350 2998 3695 * 4978 61 0 * * * * * * 5413 0 0 A 62 3371 * 3212 2829 * 6253 * 5032 3443 4720 * 3580 * 3241 4347 3179 3905 4195 * 6542 62 0 * * * * * * 5413 0 0 S 63 2605 * * 3476 6673 * 3962 3429 2997 5471 6442 * * 3205 2959 5407 5140 3801 6537 4378 63 22 * 6042 * * * * 5413 0 0 I 64 * * * * * * * 438 * 4880 4522 4010 * * 6057 * 4513 4463 * 5787 64 0 * * * * 0 * 5385 0 1000 S 65 2008 * 3412 3712 * 3681 * 6817 7416 4665 5539 2790 * 4411 4995 3038 4050 5478 * * 65 28 5691 * 1000 1000 * * 5387 1328 0 L 66 4272 * 4679 4149 * 3907 * 3419 * 3084 * 4818 1542 4021 * 4778 5701 4450 4926 * 66 0 * * * * * * 5387 0 0 I 67 * * * * * 6042 * 4763 3264 752 * * * 5432 4398 * * * 2817 4733 67 41 5157 * 0 * * * 5387 1000 0 Q 68 3016 * 5368 3894 * * 6725 * 3496 5910 4653 6929 * 945 4479 4688 5719 * * * 68 0 * * * * * * 5387 0 0 L 69 5465 * 968 4270 * 5691 * * * 5394 6042 * * * 4539 4805 3168 * 3719 3475 69 0 * * * * * * 5387 0 0 K 70 744 * 4083 3903 5996 6750 * 6504 3433 * 5510 * 4463 4763 6208 5685 * 6435 * * 70 0 * * * * * * 5387 0 0 L 71 4063 * 5943 4574 6041 4243 * 2466 5063 2593 6412 * * 4933 6546 5432 * 1672 * 4471 71 0 * * * * * * 5387 0 0 Q 72 3441 * 1694 2599 * * * * 3732 3975 5504 6676 * 4227 3584 3967 4865 5157 * * 72 40 * 5192 * * * * 5387 0 0 A 73 2457 * 6572 * 6589 * * 4236 5052 620 6729 * * * * 5481 5793 * * 6247 73 22 6018 * 1000 1000 0 * 5362 1000 1741 G 74 3788 * 2455 3515 * 1019 * * 5540 6486 * 4365 * 5900 5157 6458 5209 * * * 74 132 * 3515 * * * * 5387 0 0 R 75 * * 4165 4775 * 5943 * 1770 * 2259 2281 5045 * 6438 4435 5297 6356 4920 * 5328 75 349 * 2218 * * 461 1871 5323 0 3233 K 76 815 * 4167 4346 * 3019 * 6172 4046 5315 * * * 4165 * 6313 4815 * * * 76 1146 3328 1157 0 * 180 3089 5150 2070 4270 L 77 * * 5494 * * 4515 * 1828 * 1564 * 6027 5241 4645 * * 2104 * * * 77 0 * * * * 58 4658 5583 0 3908 M 78 4662 * 3956 4808 * 5513 * * 5272 * 6314 3527 5679 * * 2147 1095 * * * 78 17 * 6407 * * 0 * 5394 0 1103 Q 79 5441 * 1009 1981 * 5461 6680 * 5335 * * 6152 4795 3386 * * 6599 6233 * * 79 156 * 3289 * * 0 * 5383 0 1000 A 80 2499 * 2250 1876 * 4503 * 6906 4835 * * 6103 * 3857 6503 5096 4248 3903 * 6692 80 0 * * * * 175 3129 5356 0 2988 E 81 * * 3381 449 * 4380 * 6073 7101 5989 * 5355 * 4762 5353 * * * * * 81 19 6247 * 2322 322 0 * 5380 1000 1000 T 82 3202 * 6275 4310 * * * 3064 1821 3240 6927 * * 3839 3883 6499 2983 4785 * * 82 41 5816 6609 2585 263 * * 5387 1000 0 S 83 1759 * 4729 3380 * 5109 * 7146 3821 4334 6656 5303 * 3254 5489 3301 3718 4552 * 4967 83 14 * 6711 * * 0 * 5397 0 1000 R 84 3439 * 5491 3014 * * * 5999 3026 3492 4211 4779 * 2851 2838 3882 4257 6305 * 4931 84 0 * * * * 0 * 5392 0 1000 L 85 5385 * * * 3409 * * 4649 * 386 * * * * * * * * * 3699 85 0 * * * * * * 5396 0 0 N 86 3302 * 4092 4041 * 7087 * 4884 2417 3101 7138 3231 * 6999 3787 4392 2914 4057 * * 86 41 * 5158 * * * * 5396 0 0 T 87 1086 * 3825 2775 * * * 5018 5418 3528 6799 6607 * 5218 5101 4775 4559 5859 * * 87 0 * * * * * 0 5294 0 1000 V 88 * * * * 5880 * * * * 3099 * * * * * * * 5351 316 4709 88 0 * * * * 0 * 5294 0 1000 L 89 4704 * * 4547 * * 7250 4754 1233 2763 3998 * * 4132 2860 4468 * * * * 89 0 * * * * * * 5396 0 0 D 90 3319 * 3073 3997 * * * 3542 2235 3989 5494 6041 * 3493 3508 4988 3616 5063 * * 90 0 * * * * * * 5396 0 0 Y 91 * * * * 5850 5158 * * * * * * * * * * * 6136 * 89 91 0 * * * * * * 5396 0 0 I 92 4139 6074 * * 6728 * * 3377 6509 2641 6510 * * 3817 1053 4010 6356 6236 * * 92 0 * * * * * * 5396 0 0 D 93 4548 * 3718 4545 * * * 4123 3656 4090 4778 5366 * 4844 5385 * 6136 1010 * 6309 93 0 * * * * * * 5396 0 0 A 94 1359 * 5144 3688 * 6672 7140 7234 3187 2642 4460 6309 * 3437 6278 4719 6715 * * * 94 0 * * * * * * 5396 0 0 V 95 * * * * * * * 5933 * 416 5900 * * * 5158 * 5831 2540 * * 95 13 6790 * 0 * * * 5396 1000 0 T 96 5065 * 4674 3344 6000 5823 6622 7250 3641 5494 3310 1748 * 4145 6136 3145 5243 4013 * 6715 96 16 6516 * 0 * * * 5396 1000 0 A 97 2266 * 4226 4983 * * * * 3879 5823 * 6261 * 4633 967 4369 6920 * * * 97 51 5278 6760 0 * * * 5396 1078 0 T 98 4607 * * * * * * 1716 * 2657 4710 * * * * * 4759 1249 * * 98 82 4185 * 784 1254 * 0 5392 2358 1000 D 99 * * 291 6704 * * * * 6483 * * 6854 5683 3709 * 5223 * 5036 * * 99 14 6672 * 1000 1000 0 * 5392 1000 1000 T 100 4507 * * * 5092 * * 3434 6516 2223 * 6219 3089 5113 * * 1649 2939 * * 100 94 5199 4815 1000 1000 * * 5396 1542 0 S 101 5509 * 2981 4982 * 3291 * * 6280 * * 4262 5226 6480 * 978 3351 6825 * * 101 11 * 7044 * * 0 * 5416 0 2045 T 102 3174 * 5573 5033 6679 4892 4470 5579 3137 3788 5507 3807 * 5184 6337 3916 2068 4348 * 4182 102 86 5678 4713 1000 1000 0 * 5387 1388 1000 A 103 967 * 4639 * 4143 7095 * 4534 * 4123 7076 5799 2762 * * 5176 6141 5049 6030 5396 103 99 * 3912 * * 530 1702 5345 0 2132 P 104 4989 * * 5464 6147 5681 6520 * 6116 3677 * 6217 665 6051 5428 4325 4100 7083 * 6555 104 104 5178 4576 0 * 2592 262 5229 1078 2763 D 105 * 7032 601 3044 5918 6412 5901 * * * * 4082 6118 6503 5904 5051 5439 6359 * * 105 149 3556 6225 1958 429 1167 850 5299 2692 3413 V 106 * * * * 5675 * * 429 * 5127 * * 5308 * * * 4932 2895 * 5934 106 60 5008 6720 1345 722 739 1320 5259 1642 2714 I 107 3612 * 2080 2524 5450 * 7102 4998 5354 6673 * 3244 * 4845 * 4812 2974 3370 * 6370 107 14 * 6673 * * 0 * 5311 0 2153 W 108 * 6081 * * 3971 * * * * * * * * * * * * * 118 * 108 0 * * * * 0 * 5398 0 1000 P 109 * * * * * 5823 * * * * * * 26 * * * * * * * 109 0 * * * * * * 5407 0 0 E 110 4247 * 4585 1625 * 6770 * 4140 4021 4999 6841 6704 7076 4758 * 4673 2883 2433 * * 110 0 * * * * * * 5399 0 0 L 111 3479 6772 * 4398 * * 6826 5540 2215 3298 3778 5136 2543 3954 4429 4237 4916 4780 * * 111 0 * * * * * * 5383 0 0 P 112 * * * * * 6539 * * * * * * 41 * * 5854 * * * * 112 0 * * * * * * 5379 0 0 E 113 * * 2617 1199 * 5413 * * 3861 * * 3507 * 2774 3947 6648 * * * * 113 0 * * * * * * 4984 0 0 E 114 * * 3382 599 * * * * 3354 * * * * 2777 * * * * * * 114 0 * * 0 * * * 2761 0 0 //