BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (888 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P38036 Uncharacterized protein ygcB n=13 Tax=Enterobact... 1851 0.0 UniRef50_Q1JX05 CRISPR-associated helicase Cas3, core n=2 Tax=De... 717 0.0 UniRef50_C5SD53 CRISPR-associated helicase Cas3 n=1 Tax=Allochro... 643 0.0 UniRef50_A1SV69 CRISPR-associated helicase, Cas3 family n=2 Tax=... 452 e-125 UniRef50_Q314I0 CRISPR-associated helicase Cas3, core n=1 Tax=De... 352 5e-95 UniRef50_D2L2X4 CRISPR-associated helicase Cas3 n=1 Tax=Desulfov... 331 8e-89 UniRef50_B8GIV7 CRISPR-associated helicase Cas3 n=1 Tax=Methanos... 324 8e-87 UniRef50_B3E5V3 CRISPR-associated helicase Cas3 n=3 Tax=Deltapro... 322 6e-86 UniRef50_Q2RY15 CRISPR-associated helicase, Cas3 family n=1 Tax=... 311 9e-83 UniRef50_D2C268 CRISPR-associated helicase Cas3 n=3 Tax=Enteroba... 298 5e-79 UniRef50_B4RSJ9 CRISPR-associated helicase Cas3 n=3 Tax=Gammapro... 298 5e-79 UniRef50_Q12YB2 CRISPR-associated helicase Cas3 n=2 Tax=cellular... 296 2e-78 UniRef50_Q04QC1 Helicase n=2 Tax=Leptospira borgpetersenii serov... 292 5e-77 UniRef50_C7JIG3 CRISPR-associated helicase Cas3 n=8 Tax=Acetobac... 282 4e-74 UniRef50_C6C422 CRISPR-associated helicase Cas3 n=6 Tax=Enteroba... 282 4e-74 UniRef50_D2TKK3 CRISPR-associated protein n=1 Tax=Citrobacter ro... 280 2e-73 UniRef50_B5ZCG0 CRISPR-associated helicase Cas3 n=2 Tax=Gluconac... 278 6e-73 UniRef50_Q1R120 CRISPR-associated helicase Cas3, protein n=1 Tax... 274 1e-71 UniRef50_A5FTJ4 CRISPR-associated helicase Cas3 n=2 Tax=Acidiphi... 268 6e-70 UniRef50_Q7N8H9 Similar to unknown protein YgcB of Escherichia c... 266 3e-69 UniRef50_C1XFZ7 CRISPR-associated helicase Cas3 n=3 Tax=Meiother... 265 5e-69 UniRef50_D1CAJ4 CRISPR-associated helicase Cas3 n=1 Tax=Sphaerob... 265 5e-69 UniRef50_Q2JWC1 CRISPR-associated helicase Cas3 n=2 Tax=Chroococ... 262 5e-68 UniRef50_B1LQ84 CRISPR-associated helicase Cas3 n=55 Tax=Enterob... 258 6e-67 UniRef50_Q0BSC3 Superfamily II DNA and RNA helicase n=2 Tax=Alph... 256 2e-66 UniRef50_D1CGD0 CRISPR-associated helicase Cas3 n=1 Tax=Thermoba... 254 1e-65 UniRef50_B8IMR6 CRISPR-associated helicase Cas3 n=1 Tax=Methylob... 251 1e-64 UniRef50_A5UR18 CRISPR-associated helicase, Cas3 family n=1 Tax=... 247 1e-63 UniRef50_Q1J371 CRISPR-associated helicase Cas3, core n=1 Tax=De... 247 2e-63 UniRef50_A0LM50 CRISPR-associated helicase, Cas3 family n=1 Tax=... 238 7e-61 UniRef50_D0Y922 CRISPR-associated helicase Cas3 n=2 Tax=Dehaloco... 236 4e-60 UniRef50_A5GBL7 CRISPR-associated helicase Cas3 n=1 Tax=Geobacte... 235 5e-60 UniRef50_A1ARI0 CRISPR-associated helicase, Cas3 family n=3 Tax=... 232 6e-59 UniRef50_C1DSH5 CRISPR-associated helicase Cas3, core n=3 Tax=Ps... 231 9e-59 UniRef50_Q4JWJ6 Putative uncharacterized protein n=3 Tax=Coryneb... 229 3e-58 UniRef50_Q53VY2 Putative uncharacterized protein TTHB187 n=1 Tax... 229 3e-58 UniRef50_Q0W588 Putative CRISPR-associated helicase n=1 Tax=uncu... 229 4e-58 UniRef50_A8LYZ3 CRISPR-associated helicase Cas3 n=1 Tax=Salinisp... 227 1e-57 UniRef50_Q67RP4 Putative helicase n=1 Tax=Symbiobacterium thermo... 226 3e-57 UniRef50_C6SPI7 Predicted helicases n=1 Tax=Streptococcus mutans... 225 6e-57 UniRef50_B8FDH5 CRISPR-associated helicase Cas3 n=1 Tax=Desulfat... 225 7e-57 UniRef50_A8SDS1 Putative uncharacterized protein n=1 Tax=Faecali... 224 1e-56 UniRef50_C2BEU2 CRISPR-associated helicase n=1 Tax=Anaerococcus ... 218 1e-54 UniRef50_Q2JH31 CRISPR-associated helicase Cas3, core n=2 Tax=Fr... 218 1e-54 UniRef50_A8LM38 Cas3: CRISPR-associated helicase Cas3 n=1 Tax=Di... 218 1e-54 UniRef50_Q1GAI8 CRISPR-associated helicase Cas3 n=3 Tax=Lactobac... 217 1e-54 UniRef50_D1NTH7 CRISPR-associated helicase Cas3, core n=1 Tax=Bi... 215 8e-54 UniRef50_A7BA68 Putative uncharacterized protein n=1 Tax=Actinom... 214 2e-53 UniRef50_B6WQ58 Putative uncharacterized protein n=1 Tax=Desulfo... 212 5e-53 UniRef50_C7LYX0 CRISPR-associated helicase Cas3 n=1 Tax=Acidimic... 212 6e-53 UniRef50_B8IZA2 CRISPR-associated helicase Cas3 n=1 Tax=Desulfov... 211 1e-52 UniRef50_Q2RXK0 CRISPR-associated helicase, Cas3 family n=1 Tax=... 211 1e-52 UniRef50_C0VRV9 CRISPR-associated helicase Cas3 family protein p... 209 4e-52 UniRef50_B1VIY4 CRISPR-associated protein n=4 Tax=Corynebacteriu... 207 2e-51 UniRef50_UPI0001A42D32 hypothetical protein PcarcW_06344 n=1 Tax... 207 2e-51 UniRef50_C9M9R3 CRISPR-associated helicase Cas3, core n=1 Tax=Jo... 204 2e-50 UniRef50_B6IWM7 CRISPR-associated helicase Cas3, putative n=1 Ta... 203 2e-50 UniRef50_B4UE67 CRISPR-associated helicase Cas3 n=3 Tax=Bacteria... 202 4e-50 UniRef50_B4S8Q3 CRISPR-associated helicase Cas3 n=3 Tax=Bacteria... 202 7e-50 UniRef50_C7MTA6 CRISPR-associated helicase Cas3 n=1 Tax=Saccharo... 202 7e-50 UniRef50_Q0AA29 CRISPR-associated helicase Cas3 n=1 Tax=Alkalili... 201 1e-49 UniRef50_Q03C64 CRISPR-associated helicase n=3 Tax=cellular orga... 200 2e-49 UniRef50_Q60AC8 CRISPR-associated helicase Cas3 n=1 Tax=Methyloc... 200 2e-49 UniRef50_D1YEE0 CRISPR-associated helicase Cas3 n=1 Tax=Propioni... 200 2e-49 UniRef50_D1Y491 Superfamily II DNA and RNA helicase n=1 Tax=Pyra... 198 1e-48 UniRef50_Q47PJ0 CRISPR-associated helicase, Cas3 family n=1 Tax=... 197 2e-48 UniRef50_B7KJ22 CRISPR-associated helicase Cas3 n=1 Tax=Cyanothe... 195 7e-48 UniRef50_B0TDT7 Crispr-associated helicase cas3 n=1 Tax=Heliobac... 193 3e-47 UniRef50_C7MTN1 CRISPR-associated helicase Cas3 n=1 Tax=Saccharo... 192 5e-47 UniRef50_D2RAZ8 CRISPR-associated helicase Cas3 n=3 Tax=Actinoba... 191 8e-47 UniRef50_C0W6U4 CRISPR-associated helicase n=1 Tax=Actinomyces u... 190 2e-46 UniRef50_C2CN10 CRISPR-associated helicase Cas3 family protein p... 189 4e-46 UniRef50_C7QEM7 CRISPR-associated protein, Cse1 family n=12 Tax=... 189 5e-46 UniRef50_Q6NEQ4 Putative helicase n=1 Tax=Corynebacterium diphth... 188 6e-46 UniRef50_C4X9J1 CRISPR-associated Cas3 family helicase n=7 Tax=B... 186 4e-45 UniRef50_D0WFD2 CRISPR-associated helicase Cas3 n=1 Tax=Slackia ... 186 5e-45 UniRef50_C7MQD2 CRISPR-associated helicase Cas3 n=1 Tax=Saccharo... 184 1e-44 UniRef50_B5GA96 Helicase n=1 Tax=Streptomyces sp. SPB74 RepID=B5... 184 1e-44 UniRef50_Q5YRB2 Putative uncharacterized protein n=1 Tax=Nocardi... 184 2e-44 UniRef50_B6XT60 Putative uncharacterized protein n=2 Tax=Bifidob... 176 3e-42 UniRef50_D1A6Q2 CRISPR-associated helicase Cas3 n=1 Tax=Thermomo... 166 3e-39 UniRef50_C5V9N6 Putative helicase n=1 Tax=Corynebacterium matruc... 165 9e-39 UniRef50_C4ZJX7 CRISPR-associated helicase Cas3 n=2 Tax=Betaprot... 162 8e-38 UniRef50_C8XAY8 CRISPR-associated helicase Cas3 n=1 Tax=Nakamure... 161 1e-37 UniRef50_B0LU92 CRISPR-associated helicase Cas3 n=2 Tax=Streptom... 160 2e-37 UniRef50_Q1EQS5 CRISPR-associated helicase n=2 Tax=Streptomyces ... 160 3e-37 UniRef50_Q0BRG2 Superfamily II DNA and RNA helicase n=1 Tax=Gran... 157 2e-36 UniRef50_A8M400 CRISPR-associated helicase Cas3 n=1 Tax=Salinisp... 145 8e-33 UniRef50_UPI0001AF1D47 CRISPR-associated helicase Cas3 n=1 Tax=S... 144 1e-32 UniRef50_C2KP49 Helicase n=1 Tax=Mobiluncus mulieris ATCC 35243 ... 141 1e-31 UniRef50_UPI000190E95D hypothetical protein SentesTyph_16158 n=2... 138 1e-30 UniRef50_B1I5P0 Metal dependent phosphohydrolase n=2 Tax=Clostri... 137 2e-30 UniRef50_O57915 Putative uncharacterized protein PH0176 n=1 Tax=... 137 3e-30 UniRef50_A3DHS2 CRISPR-associated helicase Cas3 n=3 Tax=Clostrid... 137 3e-30 UniRef50_C2GEZ0 Helicase n=1 Tax=Corynebacterium glucuronolyticu... 135 1e-29 UniRef50_B1I4M4 CRISPR-associated helicase Cas3 n=1 Tax=Candidat... 134 1e-29 UniRef50_B5IGN2 CRISPR-associated helicase Cas3 domain protein n... 134 1e-29 UniRef50_D1B1G2 CRISPR-associated helicase Cas3 n=1 Tax=Sulfuros... 133 3e-29 UniRef50_UPI0001B51C30 hypothetical protein SvirD4_12620 n=1 Tax... 133 3e-29 UniRef50_B3EG04 CRISPR-associated helicase Cas3 n=3 Tax=cellular... 130 2e-28 UniRef50_A9B8P3 CRISPR-associated helicase Cas3 n=6 Tax=Chlorofl... 130 3e-28 UniRef50_B9L1B9 CRISPR-associated helicase Cas3 domain protein n... 127 2e-27 UniRef50_Q74N41 NEQ022 n=1 Tax=Nanoarchaeum equitans RepID=Q74N4... 124 1e-26 UniRef50_B5GY58 Crispr-associated helicase cas3 n=1 Tax=Streptom... 120 2e-25 UniRef50_C1QDM1 CRISPR-associated helicase Cas3/CRISPR-associate... 120 3e-25 UniRef50_C0E033 Putative uncharacterized protein n=1 Tax=Coryneb... 119 7e-25 UniRef50_A4XGC8 CRISPR-associated helicase Cas3 n=1 Tax=Caldicel... 118 9e-25 UniRef50_Q57821 Uncharacterized protein MJ0376 n=3 Tax=Methanoca... 117 2e-24 UniRef50_B9MLS5 CRISPR-associated helicase Cas3 n=2 Tax=Clostrid... 116 5e-24 UniRef50_C6Q963 CRISPR-associated helicase Cas3 n=1 Tax=Thermoan... 113 3e-23 UniRef50_A5UJJ3 Predicted helicase n=1 Tax=Methanobrevibacter sm... 113 4e-23 UniRef50_C5U6V4 CRISPR-associated helicase Cas3 n=3 Tax=Euryarch... 113 4e-23 UniRef50_A1HND8 CRISPR-associated helicase Cas3 n=1 Tax=Thermosi... 112 8e-23 UniRef50_A7VC53 Putative uncharacterized protein n=1 Tax=Clostri... 111 1e-22 UniRef50_A5ILM5 CRISPR-associated helicase, Cas3 family n=4 Tax=... 111 1e-22 UniRef50_UPI0000F51764 CRISPR-associated helicase Cas3 n=1 Tax=F... 110 3e-22 UniRef50_B5YAX8 CRISPR-associated helicase Cas3 n=1 Tax=Dictyogl... 109 6e-22 UniRef50_D2QT48 CRISPR-associated helicase Cas3 n=1 Tax=Spirosom... 108 7e-22 UniRef50_Q5JGA4 DEAD/DEAH box helicase, fused to N-terminal HD d... 107 2e-21 UniRef50_Q57828 Uncharacterized protein MJ0383 n=2 Tax=Euryarcha... 107 2e-21 UniRef50_C9L3W2 CRISPR-associated helicase Cas3 domain protein n... 107 2e-21 UniRef50_D1QSB0 DEAD/DEAH box helicase n=1 Tax=Prevotella oris F... 106 5e-21 UniRef50_D1JP52 Metal dependent phosphohydrolase n=2 Tax=Bactero... 104 2e-20 UniRef50_B1B9K1 Crispr-associated helicase Cas3 domain protein n... 103 3e-20 UniRef50_Q0SUG1 CRISPR-associated helicase Cas3 domain protein n... 103 3e-20 UniRef50_UPI0001AEDDCA helicase n=1 Tax=Streptomyces albus J1074... 103 4e-20 UniRef50_C9M4E9 CRISPR-associated helicase cas3 domain protein n... 102 9e-20 UniRef50_C8S7A2 CRISPR-associated helicase Cas3 n=1 Tax=Ferroglo... 101 1e-19 UniRef50_B5YIV2 CRISPR-associated helicase Cas3 n=1 Tax=Thermode... 101 1e-19 UniRef50_B1C2J7 Putative uncharacterized protein n=1 Tax=Clostri... 101 1e-19 UniRef50_Q8REC9 ATP-dependent RNA helicase n=4 Tax=Fusobacterium... 100 2e-19 UniRef50_B0MFZ6 Putative uncharacterized protein n=1 Tax=Anaeros... 100 4e-19 UniRef50_B7R551 CRISPR-associated helicase Cas3 domain protein n... 100 4e-19 UniRef50_Q7MTF0 CRISPR-associated helicase Cas3 n=1 Tax=Porphyro... 99 7e-19 UniRef50_C5UTG9 Metal dependent phosphohydrolase n=1 Tax=Clostri... 99 9e-19 UniRef50_Q2RHQ9 CRISPR-associated helicase Cas3 n=1 Tax=Moorella... 99 9e-19 UniRef50_Q8F1E6 ATP-dependent RNA helicase, putative n=2 Tax=Lep... 98 1e-18 UniRef50_B2V8N4 CRISPR-associated helicase Cas3 n=2 Tax=Sulfurih... 98 2e-18 UniRef50_UPI0001699052 Helicase n=1 Tax=Endoriftia persephone 'H... 97 3e-18 UniRef50_A3XI96 Putative uncharacterized protein n=1 Tax=Leeuwen... 97 3e-18 UniRef50_UPI0001BC6554 ATP-dependent RNA helicase n=3 Tax=Fusoba... 97 3e-18 UniRef50_B3QT88 Metal dependent phosphohydrolase n=3 Tax=Bacteri... 97 3e-18 UniRef50_D0GJL0 Metal dependent phosphohydrolase n=1 Tax=Leptotr... 97 3e-18 UniRef50_C9XQV8 Crispr-associated helicase cas3 n=2 Tax=Clostrid... 96 9e-18 UniRef50_B7GIV6 CRISPR-associated protein Cas3 n=3 Tax=Bacillace... 95 1e-17 UniRef50_C6A4J6 Putative uncharacterized protein n=1 Tax=Thermoc... 94 3e-17 UniRef50_Q184G8 Putative uncharacterized protein n=7 Tax=Clostri... 93 4e-17 UniRef50_A6TQ84 Metal dependent phosphohydrolase n=2 Tax=Firmicu... 92 7e-17 UniRef50_C7N973 CRISPR-associated helicase Cas3 n=2 Tax=Bacteria... 92 8e-17 UniRef50_A8L914 CRISPR-associated helicase Cas3 n=5 Tax=Actinomy... 92 8e-17 UniRef50_O27158 Conserved protein n=1 Tax=Methanothermobacter th... 92 9e-17 UniRef50_A4X3M6 CRISPR-associated helicase, Cas3 family n=1 Tax=... 91 1e-16 UniRef50_D1A6P6 Metal dependent phosphohydrolase n=1 Tax=Thermom... 91 1e-16 UniRef50_UPI0001A42E8B hypothetical protein PcarcW_20928 n=1 Tax... 91 2e-16 UniRef50_C8W344 CRISPR-associated helicase Cas3 n=1 Tax=Desulfot... 91 2e-16 UniRef50_B8DAB0 Metal dependent phosphohydrolase n=8 Tax=Listeri... 90 4e-16 UniRef50_C1DUL9 Crispr-associated helicase Cas3 n=3 Tax=Hydrogen... 90 5e-16 UniRef50_UPI00016C5613 CRISPR-associated helicase Cas3 n=1 Tax=G... 89 9e-16 UniRef50_C2HJB0 ATP-dependent helicase n=1 Tax=Finegoldia magna ... 89 9e-16 UniRef50_O30165 ATP-dependent RNA helicase, putative n=2 Tax=Eur... 88 1e-15 UniRef50_C0EXP0 Putative uncharacterized protein n=1 Tax=Eubacte... 88 2e-15 UniRef50_B5YKZ7 CRISPR-associated helicase Cas3 n=1 Tax=Thermode... 85 1e-14 UniRef50_B2RM87 Probable CRISPR-associated helicase Cas3 core n=... 85 1e-14 UniRef50_B4VUE8 CRISPR-associated helicase Cas3 domain protein n... 85 2e-14 UniRef50_O66694 Putative uncharacterized protein n=2 Tax=Aquific... 84 2e-14 UniRef50_B1XPP6 CRISPR-associated helicase n=2 Tax=Chroococcales... 84 2e-14 UniRef50_Q1Q4B7 Putative uncharacterized protein n=1 Tax=Candida... 84 3e-14 UniRef50_C6PCV3 CRISPR-associated helicase Cas3 n=1 Tax=Thermoan... 84 3e-14 UniRef50_A7GQ88 CRISPR-associated helicase Cas3 n=1 Tax=Bacillus... 83 4e-14 UniRef50_B5YBH9 CRISPR-associated helicase Cas3 n=1 Tax=Dictyogl... 79 1e-12 UniRef50_Q182D7 Probable ATP-dependent helicase n=11 Tax=Clostri... 79 1e-12 UniRef50_B0TFM5 Crispr-associated helicase cas3, putative n=1 Ta... 78 1e-12 UniRef50_C5A6D4 CRISPR-associated helicase Cas3, core n=1 Tax=Th... 78 2e-12 UniRef50_A9WBB7 CRISPR-associated helicase Cas3 n=3 Tax=Chlorofl... 77 3e-12 UniRef50_A1RZX1 CRISPR-associated helicase Cas3 n=1 Tax=Thermofi... 76 6e-12 UniRef50_D0MJ67 CRISPR-associated helicase Cas3 n=1 Tax=Rhodothe... 75 9e-12 UniRef50_UPI0001C159E2 CRISPR-associated helicase Cas3 n=1 Tax=R... 75 2e-11 UniRef50_A8UTP5 Putative uncharacterized protein n=1 Tax=Hydroge... 74 3e-11 UniRef50_UPI0001BC52A9 metal dependent phosphohydrolase n=1 Tax=... 74 3e-11 UniRef50_Q1CW46 CRISPR-associated helicase Cas3 n=1 Tax=Myxococc... 74 3e-11 UniRef50_B7KMS0 CRISPR-associated helicase Cas3 n=1 Tax=Cyanothe... 73 4e-11 UniRef50_Q1AZD4 CRISPR-associated helicase, Cas3 family n=1 Tax=... 72 1e-10 UniRef50_B5GV92 Crispr-associated helicase cas3 n=1 Tax=Streptom... 70 2e-10 UniRef50_A9GDE7 ATP-dependent RNA helicase n=1 Tax=Sorangium cel... 70 3e-10 UniRef50_B1L410 CRISPR-associated helicase Cas3 n=1 Tax=Candidat... 69 8e-10 UniRef50_D2PIF7 CRISPR-associated helicase Cas3 n=11 Tax=Sulfolo... 69 8e-10 UniRef50_B3U4W9 CRISPR-associated helicase Cas3 (Fragment) n=1 T... 68 1e-09 UniRef50_Q53VU9 Putative ATP-dependent RNA helicase n=1 Tax=Ther... 67 3e-09 UniRef50_A8M9D0 CRISPR-associated helicase Cas3 n=1 Tax=Caldivir... 67 4e-09 UniRef50_A0YUQ7 ATP-dependent RNA helicase, putative n=1 Tax=Lyn... 67 4e-09 UniRef50_C8VZL0 CRISPR-associated helicase Cas3 n=1 Tax=Desulfot... 66 5e-09 UniRef50_A1VHS3 Metal dependent phosphohydrolase n=3 Tax=Desulfo... 66 5e-09 UniRef50_A5D0R9 Predicted helicases n=1 Tax=Pelotomaculum thermo... 66 5e-09 UniRef50_UPI0001C41C2F CRISPR-associated helicase Cas3 n=1 Tax=M... 66 5e-09 UniRef50_C3CTC0 ATP-dependent RNA helicase n=1 Tax=Bacillus thur... 66 7e-09 UniRef50_C7QY85 CRISPR-associated helicase Cas3 n=1 Tax=Cyanothe... 65 1e-08 UniRef50_UPI0001698E9E CRISPR-associated helicase Cas3 n=2 Tax=G... 65 1e-08 UniRef50_Q467D2 Putative uncharacterized protein n=1 Tax=Methano... 65 1e-08 UniRef50_C1TQC9 CRISPR-associated helicase Cas3 n=1 Tax=Dethiosu... 65 2e-08 UniRef50_O28405 Putative uncharacterized protein n=1 Tax=Archaeo... 65 2e-08 UniRef50_A3XIA0 Predicted helicase n=1 Tax=Leeuwenhoekiella blan... 64 2e-08 UniRef50_C1XWQ3 CRISPR-associated helicase Cas3/CRISPR-associate... 64 2e-08 UniRef50_C0QHV8 Putative CRISPR-associated helicase Cas3 (ATP-de... 63 5e-08 UniRef50_A7HLK7 CRISPR-associated helicase Cas3 n=5 Tax=Bacteria... 63 5e-08 UniRef50_C5RQB0 CRISPR-associated helicase Cas3 n=1 Tax=Clostrid... 61 2e-07 UniRef50_A8TI35 CRISPR-associated helicase Cas3 n=1 Tax=Methanoc... 61 2e-07 UniRef50_C7P9K5 CRISPR-associated helicase Cas3 n=2 Tax=Methanoc... 60 4e-07 UniRef50_B9MPU0 CRISPR-associated helicase Cas3 n=1 Tax=Anaeroce... 60 4e-07 UniRef50_A3DLC7 CRISPR-associated helicase, Cas3 family n=1 Tax=... 60 4e-07 UniRef50_Q2NH80 Predicted helicase n=1 Tax=Methanosphaera stadtm... 60 5e-07 UniRef50_C4IBN7 Crispr-associated helicase Cas3 n=1 Tax=Clostrid... 59 6e-07 UniRef50_C3MWK3 CRISPR-associated helicase Cas3 n=5 Tax=Sulfolob... 59 9e-07 UniRef50_A2BKI6 Predicted helicase n=1 Tax=Hyperthermus butylicu... 59 1e-06 UniRef50_A8ABL2 CRISPR-associated helicase Cas3 n=1 Tax=Ignicocc... 59 1e-06 UniRef50_A4XFN3 CRISPR-associated helicase Cas3 n=1 Tax=Caldicel... 59 1e-06 UniRef50_C8X3A9 CRISPR-associated helicase Cas3 n=2 Tax=Desulfoh... 59 1e-06 UniRef50_A8UUT3 Predicted helicase n=1 Tax=Hydrogenivirga sp. 12... 59 1e-06 UniRef50_B0JKW2 Putative ATP-dependent RNA helicase n=1 Tax=Micr... 58 2e-06 UniRef50_Q8ZZV0 Helicase, probable n=1 Tax=Pyrobaculum aerophilu... 58 2e-06 UniRef50_A3ZP40 Putative uncharacterized protein n=1 Tax=Blastop... 57 2e-06 UniRef50_A8DJZ2 DEAD/DEAH box helicase domain protein n=1 Tax=Ca... 57 2e-06 UniRef50_C8WTR1 CRISPR-associated helicase Cas3 n=2 Tax=Alicyclo... 57 4e-06 UniRef50_B8GLG5 Putative uncharacterized protein n=1 Tax=Thioalk... 57 4e-06 UniRef50_UPI0000F51713 CRISPR-associated helicase Cas3 n=1 Tax=F... 56 6e-06 UniRef50_C2BS05 Possible CRISPR-associated protein n=1 Tax=Mobil... 56 7e-06 UniRef50_A7NF51 CRISPR-associated helicase Cas3 n=1 Tax=Roseifle... 56 8e-06 UniRef50_C3RBZ9 Crispr-associated helicase cas3 n=7 Tax=Bacteroi... 56 8e-06 UniRef50_A4YFV0 CRISPR-associated helicase, Cas3 family n=1 Tax=... 56 8e-06 UniRef50_A6LJX0 CRISPR-associated helicase Cas3 n=1 Tax=Thermosi... 55 9e-06 UniRef50_Q6ARW0 Putative uncharacterized protein n=1 Tax=Desulfo... 55 2e-05 UniRef50_D0MKL2 CRISPR-associated helicase Cas3, Anaes-subtype n... 54 3e-05 UniRef50_D1BYL3 CRISPR-associated helicase Cas3, Anaes-subtype n... 54 3e-05 UniRef50_C9RCY3 CRISPR-associated helicase Cas3 n=2 Tax=Thermoan... 52 8e-05 UniRef50_B0M915 Putative uncharacterized protein n=1 Tax=Anaeros... 52 1e-04 UniRef50_C5CFB0 CRISPR-associated helicase Cas3 n=1 Tax=Kosmotog... 52 1e-04 UniRef50_UPI0001746122 hypothetical protein VspiD_22760 n=1 Tax=... 52 1e-04 UniRef50_UPI0001B50180 CRISPR-associated helicase Cas3 family pr... 51 2e-04 UniRef50_B8I204 Metal dependent phosphohydrolase n=1 Tax=Clostri... 51 2e-04 UniRef50_C3X8E5 Putative uncharacterized protein n=2 Tax=Proteob... 51 2e-04 UniRef50_B1GZL6 CRISPR-associated protein Cas3 n=1 Tax=unculture... 50 3e-04 UniRef50_Q1Q100 Putative uncharacterized protein n=1 Tax=Candida... 50 5e-04 UniRef50_C0EDE1 Putative uncharacterized protein n=1 Tax=Clostri... 50 5e-04 UniRef50_UPI0001C373E8 CRISPR-associated helicase Cas3 n=1 Tax=R... 49 0.001 UniRef50_A0B6V7 CRISPR-associated helicase Cas3 n=1 Tax=Methanos... 49 0.001 UniRef50_B8CYA2 CRISPR-associated helicase Cas3 n=1 Tax=Halother... 48 0.002 UniRef50_Q9YCM6 CRISPR-associated helicase Cas3 n=1 Tax=Aeropyru... 48 0.002 UniRef50_A4FXZ4 CRISPR-associated helicase, Cas3 family n=1 Tax=... 47 0.002 UniRef50_A8M637 CRISPR-associated helicase Cas3, Anaes-subtype n... 47 0.003 UniRef50_D1CHV2 CRISPR-associated helicase Cas3 n=1 Tax=Thermoba... 46 0.005 UniRef50_A3MVM5 CRISPR-associated helicase, Cas3 family n=2 Tax=... 46 0.005 >UniRef50_P38036 Uncharacterized protein ygcB n=13 Tax=Enterobacteriaceae RepID=YGCB_ECOLI Length = 888 Score = 1851 bits (4795), Expect = 0.0, Method: Compositional matrix adjust. Identities = 888/888 (100%), Positives = 888/888 (100%) Query: 1 MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSK 60 MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSK Sbjct: 1 MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSK 60 Query: 61 QRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLY 120 QRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLY Sbjct: 61 QRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLY 120 Query: 121 WFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASL 180 WFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASL Sbjct: 121 WFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASL 180 Query: 181 ASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTF 240 ASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTF Sbjct: 181 ASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTF 240 Query: 241 LFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLV 300 LFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLV Sbjct: 241 LFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLV 300 Query: 301 DALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEAS 360 DALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEAS Sbjct: 301 DALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEAS 360 Query: 361 ASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIG 420 ASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIG Sbjct: 361 ASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIG 420 Query: 421 VCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVI 480 VCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVI Sbjct: 421 VCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVI 480 Query: 481 LLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSI 540 LLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSI Sbjct: 481 LLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSI 540 Query: 541 QPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLF 600 QPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLF Sbjct: 541 QPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLF 600 Query: 601 HARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLF 660 HARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLF Sbjct: 601 HARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLF 660 Query: 661 QRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGAS 720 QRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGAS Sbjct: 661 QRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGAS 720 Query: 721 LFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDND 780 LFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDND Sbjct: 721 LFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDND 780 Query: 781 ETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRS 840 ETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRS Sbjct: 781 ETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRS 840 Query: 841 FSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMTRVIPANPK 888 FSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMTRVIPANPK Sbjct: 841 FSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMTRVIPANPK 888 >UniRef50_Q1JX05 CRISPR-associated helicase Cas3, core n=2 Tax=Desulfuromonadales RepID=Q1JX05_DESAC Length = 885 Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust. Identities = 434/907 (47%), Positives = 564/907 (62%), Gaps = 51/907 (5%) Query: 1 MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSK 60 ME K+ YWGK+++ HLL YHCLDVAAVA WW+ S +++ FC+ + + Sbjct: 1 MEFVKFYA-YWGKTAED----GRYHLLPYHCLDVAAVAAAWWNASFAIRHRFCQGQ--DE 53 Query: 61 QRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNG------PSTQMCRKFNH 114 R++AWLLFF ALHD GKFD+RFQ KS +PA L G PS + + H Sbjct: 54 TRIRAWLLFFCALHDYGKFDLRFQLKS-------HPAFKQLYGFSDGILPSKNESKDYWH 106 Query: 115 GAAGLYWFNQDSL---SEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDK 171 G AGLYWF+ D L E GD + P + ++ PW+EAVTGHHG H ++ D Sbjct: 107 GEAGLYWFHNDILELFGEGDTGDSLFVDENDPEQWAAFKPWIEAVTGHHG---HLKNADY 163 Query: 172 SRWEMPASLAS--YAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSS----LLAGFC 225 R +S YA+ D ++R W+ LE LFLTPAGLS+ PP SS LAGFC Sbjct: 164 LRDLSFSSQVDDRYASIDFKSRVAWLYALEKLFLTPAGLSMTSEPPCLSSYQAVFLAGFC 223 Query: 226 SLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDR-QQDASRVLELSGLVSNKRCYEGVH 284 S+ADWLGS F F E P D L++YF+ + DA RVL+LSGL+ + + GV Sbjct: 224 SVADWLGSRCDDTDFSFLE-TPQD---LQSYFEGKIAADAQRVLQLSGLIGQPKSFSGVA 279 Query: 285 ALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFAL 344 ALL G PR LQ L + LP P LT+IEAPTG+GKTE ALA+AWK++D +A+++IFAL Sbjct: 280 ALLPAGKPPRPLQCLTENLPANPSLTIIEAPTGNGKTEAALAHAWKIVDSGLAEAIIFAL 339 Query: 345 PTQATANAMLTRMEASASHLFS-SPNLILAHGNSRFNHLFQSIKSRAITEQGQEE-AWVQ 402 PTQATANAM R+E +A LF+ SPNL+LAHG +RFN F +K R E G E+ WV+ Sbjct: 340 PTQATANAMFGRLEKAAKILFADSPNLLLAHGFARFNEPFAELKKRGRVEDGDEQDGWVK 399 Query: 403 CCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMN 462 C +WL++S K+VFLGQIGVCTIDQVLISVLPV+HRF+RG G+GRSVLIVDEVHAYD YM Sbjct: 400 CSEWLAESRKRVFLGQIGVCTIDQVLISVLPVRHRFVRGFGVGRSVLIVDEVHAYDAYMY 459 Query: 463 GLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGA 522 GLLE VL+ Q GGS ILLSATLP QKQ L + +YPLI+ Sbjct: 460 GLLEEVLRQQRASGGSAILLSATLPFHQKQHLFSAWDSDLPESRERDSYPLISC--ATNR 517 Query: 523 QRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQV 582 + L + P ++ E + M+PD +++ER+IAAA AGAQV +ICNLVDVAQ Sbjct: 518 EVLPLSLAEDDEPDPLTVNVECVRFDGMVPDASLIERLIAAAAAGAQVAVICNLVDVAQN 577 Query: 583 CYQRL-KELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQS 641 Y++L K+ + +DLFHARF DR+ KE VI FG NG R GRILVATQVVEQS Sbjct: 578 LYEQLKKQAKEASITVDLFHARFRFLDRQVKEQSVIHTFGLNGNRKKGRILVATQVVEQS 637 Query: 642 LDVDFDWLITQHCPADLLFQRLGRLHRH--HRKYRPAGFEIPVATILLPDGEGYGRHEHI 699 LDVDFDW+ITQ CP DLLFQR+GRLHRH + RPA F + T++LP + YG + Sbjct: 638 LDVDFDWIITQLCPIDLLFQRMGRLHRHEINDATRPAAFSKRLCTVVLPTDDDYGGTAVV 697 Query: 700 YSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMD-EPEWVGNGMDKFESAEC 758 Y N RV+WRT+Q + E + FP AYR ++ Y EPE + +FE Sbjct: 698 YGNKRVLWRTEQILAE--SEQIVFPVAYRTQIEKAYQQEPWPYEPEEITEANREFEDEIY 755 Query: 759 EKRFKARKVLQWAEEYS-LQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDL 817 K +KAR+ + A + + D+DE+I AVTRDGEMSL ++PY+ + +G++ LDG + + L Sbjct: 756 IKGYKARQAVNMARDSNPFVDSDESITAVTRDGEMSLTVIPYLDSDAGRRTLDGDLLDSL 815 Query: 818 SHEQQYEALALNRVNVPFT--WKRSFSEV-VDEDGLLWLEGKQNLDGWVWQGNSIVITYT 874 + E LALN +NVP T WK + +V + ED WL + +G++ +G + Y Sbjct: 816 DEYRLLEILALNSINVPGTGGWKGALKDVPLGEDKRYWLNMQPTREGFIAEGIQTIFRYH 875 Query: 875 GDEGMTR 881 D G+ R Sbjct: 876 RDTGLRR 882 >UniRef50_C5SD53 CRISPR-associated helicase Cas3 n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SD53_CHRVI Length = 877 Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/888 (43%), Positives = 520/888 (58%), Gaps = 48/888 (5%) Query: 10 YWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRN---EMLSKQRVKAW 66 YW K+ + N H YH LD A +A +W S ++ T E QR+ AW Sbjct: 9 YWAKADTGVEGANKWHPFAYHSLDAAVIAATFWRDSSAVRRTLMAAFDVEEAEIQRLLAW 68 Query: 67 LLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDS 126 +LFF+ALHDIGK FQ K+ ++ P S T ++HG G Sbjct: 69 ILFFVALHDIGKLHALFQIKAPHILPQIWPDLASTKLIDTSGGH-YDHGREGY------R 121 Query: 127 LSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPA-SLASYAA 185 LS L +F A+ H ++W W+ AVTGHHG I + D +PA + A+ Sbjct: 122 LSMAELRGWFK--PASRHALKAWSSWLAAVTGHHGEIPDNDD------PLPAYAEATILE 173 Query: 186 QDKQAREEWISVLEALFLTPAGLSINDIPPDCSS----LLAGFCSLADWLGSWTTTNTFL 241 QD AR WI LFL PAGLS+ D PP C + LLAGFCSL DW+GS + F Sbjct: 174 QDANARRAWIQEAADLFLHPAGLSLEDPPPPCVTEARNLLAGFCSLCDWIGS--NVDVFA 231 Query: 242 FNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVD 301 + A S + L + + ++D +L GL++ Y+G+ ALL PR QV++D Sbjct: 232 YAPPALSPNDYLHSRLEQIRRD--DILRHFGLIATPLAYQGIPALLKTDEHPRGTQVMID 289 Query: 302 ALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASA 361 LP+ PGLT++EAPTGSGKTE ALAYAW+LID +A+S++FALPTQATANAML R E + Sbjct: 290 DLPLVPGLTIVEAPTGSGKTEAALAYAWRLIDAGLAESIVFALPTQATANAMLGRCETFS 349 Query: 362 SHLFSSPNLILAHGNSRFNHLFQSI--KSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQI 419 F NL+LAHG+SR N +Q + T QG+ EA VQC WL+ S K+VFLGQI Sbjct: 350 KSAFGRANLVLAHGHSRLNQAYQRLIEAGSKRTAQGETEAGVQCAAWLASSRKRVFLGQI 409 Query: 420 GVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSV 479 GVCT+DQVL+SVLPV+H F+R G+ RSVLIVDEVHAYD YMNGLL VLK Q VGGS Sbjct: 410 GVCTVDQVLLSVLPVRHNFVRAFGLHRSVLIVDEVHAYDAYMNGLLIEVLKRQKAVGGSA 469 Query: 480 ILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPE-QLPPRF 538 ILLSATLP + KLL+++G +PV + + YP I W ++ L+ P+ + P + Sbjct: 470 ILLSATLPASIRGKLLESWG--HEPVADVANYPAI-WNTAALSESDSPLSLPDTERPAQR 526 Query: 539 SIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDID 598 +I+ L PD +++R+I AA +GA V ++ N VD AQ + +L + N QV +D Sbjct: 527 TIEVSLSKLGGACPDEPLIQRIIDAAESGALVGIVMNTVDDAQQLWIQLHK--NAQVPVD 584 Query: 599 LFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADL 658 LFHARF L DR+ E RVI ++G++ +R GRILVATQV+EQSLD+DFDWLITQ CP DL Sbjct: 585 LFHARFRLQDRQRIEQRVIEHYGRDAERTQGRILVATQVIEQSLDLDFDWLITQLCPVDL 644 Query: 659 LFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNG 718 LFQRLGRLHRH RK RP F++P T+L + + YG HE IY + R++WRT+ + Sbjct: 645 LFQRLGRLHRHSRK-RPDDFQVPTCTVLSVETDDYGLHELIYGDARLLWRTEFLLARHK- 702 Query: 719 ASLFFPDAYRQWLDSIYDDAEM-DEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQ 777 + FP AYR+W++ +Y +A DEP V + + E KA + L + Sbjct: 703 -QIHFPAAYREWIEPVYGEAPWDDEPGTVYGKHLAWRDDQSEAEKKAHR-LTTMNLSKFR 760 Query: 778 DNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTW 837 D++E + ++TRDGEMSL +L T +LLDG+ + + Q E L LN V P +W Sbjct: 761 DDEERLTSLTRDGEMSLSVL---LTREDGRLLDGEDPDQMDEYTQAETLMLNTVPAPHSW 817 Query: 838 --KRSFSEVVDEDGLLWLEGKQNLDG-WVWQGNSIVITYTGDEGMTRV 882 ++ V DEDG + L K + DG W + YT + G+ + Sbjct: 818 GDRQLAGHVRDEDGRIRL--KMHDDGQQRWSSLDGGVCYTTELGLAKA 863 >UniRef50_A1SV69 CRISPR-associated helicase, Cas3 family n=2 Tax=Gammaproteobacteria RepID=A1SV69_PSYIN Length = 823 Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust. Identities = 315/870 (36%), Positives = 454/870 (52%), Gaps = 119/870 (13%) Query: 10 YWGKS-SKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLL 68 YWGK+ S+S G D HLL YHCLDV AVAD W ++S +L + ++ + K L Sbjct: 21 YWGKAKSESQATGADYHLLPYHCLDVTAVADVWLEESNILLSQISCYLDTTQDQAKRICL 80 Query: 69 FFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLS 128 FFI LHD+GKFD RFQ + L + T ++HG+ G F++ Sbjct: 81 FFILLHDLGKFDARFQNFREDIRQILQGDDWEIEPDPTY----YSHGSCGYRQFSE---- 132 Query: 129 EQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFI-----LHSQDQDKSRWEMPASLASY 183 FD ++AV GHHG H D D E+ Sbjct: 133 ---------MFDTNE--------AMKAVAGHHGSCDTSQPYHDPDADDELLEL------- 168 Query: 184 AAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFN 243 D+QAR+EW+ + DIP +LAG CS+ADW+GS T F Sbjct: 169 ---DEQARKEWVEFSLDFCQLKEVPDVGDIP-----MLAGLCSVADWVGSSITN----FT 216 Query: 244 EDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDAL 303 D PS IN L+ Y+QD A + L +G++ ++ A L NGY+PR +Q L+ + Sbjct: 217 TD-PS-IN-LQQYYQDTLLRARKALVDTGMI--EKSQGAGFAYLFNGYRPRGIQTLLSEM 271 Query: 304 PVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASH 363 P+ GLT++E+ TGSGKTE ALAYA LI+ +AD V+F LPTQATAN + +R+ +A Sbjct: 272 PLKAGLTLVESDTGSGKTEFALAYASSLIEAGLADGVVFGLPTQATANGLFSRVGDAAKK 331 Query: 364 LFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCT 423 LF LAHG S++ E G +L QSNK+ FLG + V T Sbjct: 332 LFPDTKTTLAHGKSKY---------LMSDESG----------FLQQSNKRAFLGSMSVAT 372 Query: 424 IDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLS 483 IDQ+L+ VL ++H+F+R G +SVL++DE+H++D YM GL+E VLK Q SVILLS Sbjct: 373 IDQILMGVLGIRHQFVRSFGTRKSVLVLDEIHSFDAYMLGLIEQVLKGQHQAYSSVILLS 432 Query: 484 ATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNG-AQRFDLLAHPEQLPPRFSIQP 542 ATLP K+KLL TY + N+AYPL++ + Q F L P+Q + +I Sbjct: 433 ATLPNTLKEKLLSTYKGKS----LNNAYPLVSHTDLFATTQEFTL---PKQATNK-TITL 484 Query: 543 EPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHA 602 + C D+LP + ++MI + GA V +ICN V AQ Y ++K + N ++ I+LFHA Sbjct: 485 KTWCSDDLLPSINQRKKMIDWVSQGAMVGVICNTVKDAQRLYHQIK-IANPELKIELFHA 543 Query: 603 RFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQR 662 RFT DR+++E++V+ N+ KN KR GR+L+ATQV+EQSLD+DFD LI+Q P + L QR Sbjct: 544 RFTFGDRKKREDQVLKNYDKNAKR-TGRLLIATQVIEQSLDLDFDVLISQIAPIEFLMQR 602 Query: 663 LGRLHRHHRKY-----RPAGFEIPVATILLPD-----------------GEGYGRHEHIY 700 +GRL RH R R + + P+ LLP+ G GY +Y Sbjct: 603 MGRLWRHERIDSGLCPRASCIKAPLFITLLPNEKITDLTSSEQLKHHYQGSGY-----VY 657 Query: 701 SNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEM-DEPEWVGNGMDKFESAECE 759 N R+++RT+Q++ + L FPD YR+ ++ ++++ +EP+ + + D++ Sbjct: 658 QNSRLLYRTEQYLNQ--HPLLHFPDCYREAINYVHEEQSYSEEPQVLTSVADEYSIIADG 715 Query: 760 KRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSH 819 + AR L + L D D +TRDGEMS ++ + + G L G E Sbjct: 716 SNYTARS-LSKLQSKPLNDVDPRCALLTRDGEMSATVVLFKE--DGSLLHGGDFNEQQDR 772 Query: 820 EQQYEALALNRVN-VPFTWKRSFSEVVDED 848 E ALA + + VVD+D Sbjct: 773 ENSTVALAKKHAKGIKDERYYCYKAVVDKD 802 >UniRef50_Q314I0 CRISPR-associated helicase Cas3, core n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q314I0_DESDG Length = 892 Score = 352 bits (902), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 288/836 (34%), Positives = 406/836 (48%), Gaps = 99/836 (11%) Query: 10 YWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLF 69 YW K +++ +HLL YH LDVAAV D + + VLQ CR LS ++A L Sbjct: 13 YWAKFDRNIAPY--VHLLPYHLLDVAAVYDSLLNHTPVLQRRICRLSQLSPDTIRALLRT 70 Query: 70 FIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSE 129 LHD+GKF FQ + E+ L P+ G +T +H A G + ++ S+ Sbjct: 71 LAVLHDLGKFSQIFQEQQPEARAILTDTPPTGLGGNT------HHTALGQWLYS--SVVR 122 Query: 130 QSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQ 189 Q+L D + F + ++ P V A GHHG + +Q+ S+ + + Sbjct: 123 QALEDCHAVF--SEDAMDTMRPLVNATFGHHG----TPEQES------GSIRHFRRATEH 170 Query: 190 AREEWISVLEALFLTPAGLSINDIPPD------CSSLLAGFCSLADWLGSWTTTNTFLFN 243 A+ + A FL P +IP S L AG +ADWLGS NT F Sbjct: 171 AKA--FATEAANFLLPP----IEIPESEQAFRALSWLHAGLMVVADWLGS----NTRWFP 220 Query: 244 EDAPSDINALRTYFQD-RQQDASRVLELSGLVSN----KRCYEGV--HALLDNGYQPRQL 296 A + L TY+ + A R + SG+ + KR + + H + G P Q Sbjct: 221 YHA--EQMPLETYWNEIALPRADRAVRESGIPAAPPHPKRDFTRLLPHLPANAGPSPLQS 278 Query: 297 QVLVDAL-PVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLT 355 L DA+ P L + E TG GKTE AL A L+ AD ALPT ATAN M Sbjct: 279 HALYDAIRSSGPQLHIFEDMTGGGKTEAALLCAHGLMTMSEADGFYIALPTMATANGMYA 338 Query: 356 RMEASASHLFSSP---------NLILAHGNSRFNHLFQSIKSRAITEQG---QEEAWVQC 403 R+ S LF S +LILAHG + LF S A E Q + C Sbjct: 339 RLAQSYRALFGSDKDSAQDSPISLILAHGARNLSDLFMSGVPDANAESAIDPQSDGRAYC 398 Query: 404 CQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNG 463 WL+ S KK L GV TIDQ L++VLP +H+ +R LG+ R+VL++DEVHAYD Y Sbjct: 399 ATWLADSRKKALLSPCGVGTIDQALLAVLPARHQCLRLLGLARNVLVIDEVHAYDEYTGS 458 Query: 464 LLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTY---GLHTDPVENNSAYPLINWRGVN 520 LL+A+L+ A +GGS ILLSATL + +Q L + + P N +PL + Sbjct: 459 LLQALLRFHAALGGSAILLSATLTRRIRQNLAAAFCEGAGYPAPTLNVDDFPLATTADSH 518 Query: 521 GAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVA 580 G + A P + + I + + M + ++ AG C I N VD A Sbjct: 519 GMRE---TAFP-------ATRRSTIHVKLTADENAMYKALLETRAAGGCACWIRNTVDQA 568 Query: 581 QVCYQRLKELNNT-QVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGR--ILVATQV 637 + Y+RL+E + + DI LFHARF + DR+ E RV++ FGKN ++ R ILVATQV Sbjct: 569 REAYERLREQHGVPEKDIILFHARFAMADRQHIEQRVLALFGKNSTQDDRRSKILVATQV 628 Query: 638 VEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEG----- 692 VEQSLD+DFD L + H P +LL QR GR HRH+R RP G E P +L P Sbjct: 629 VEQSLDLDFDQLNSDHAPMELLIQRGGRCHRHNRN-RPRGLESPRMLVLAPQARNDAPQD 687 Query: 693 -----YGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVG 747 G+ + +Y +WR + +E++ L PD R+ ++S+YDD E PE + Sbjct: 688 WYASVLGKAQFVYPVQAPLWRAAKLLEKVK--QLTLPDDARRLVESVYDDNEF-APESLQ 744 Query: 748 NGMDKFESAECEKRFKAR-KVLQWAEEYSLQ------DNDETILAVTRDGEMSLPL 796 N +++ + K+ AR L+ YS+Q ++DE + VTR GE ++ L Sbjct: 745 NADERYLAEALGKKDLARFNTLKLEAGYSVQALGRGWEDDECV--VTRLGEETVQL 798 >UniRef50_D2L2X4 CRISPR-associated helicase Cas3 n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L2X4_9DELT Length = 892 Score = 331 bits (849), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 285/808 (35%), Positives = 377/808 (46%), Gaps = 80/808 (9%) Query: 9 HYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVL-QNTFCRNEMLSKQRVKAWL 67 HYWGK++K T HLL+YHCLDVAA D L Q ++ + A L Sbjct: 3 HYWGKAAKGSTAH---HLLVYHCLDVAATLRALLDADKRLHQRLHALAPAVAPADLDALL 59 Query: 68 LFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSL 127 L+F LHD+GKF FQ + + KL+ P+ ++C + +F++D + Sbjct: 60 LYFAVLHDLGKFAPAFQQQRQDIVDKLD------GPPAKRICNAHHSHLGKAIFFDEDIV 113 Query: 128 S--EQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAA 185 + SL D PH + P +A GHHG QD S +P S A AA Sbjct: 114 VAWQPSL----LCRDGWPH-KDILAPLTDAAFGHHG--KPPQDLSDSNLRLPPSTA--AA 164 Query: 186 QDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNED 245 + E L P G + N S AG +ADWL S F + E Sbjct: 165 IRQFMGEVCSRFLPGPLTLPGGDAANQAFRPVSWFFAGLLVVADWLAS---GQGFAYCE- 220 Query: 246 APSDINALRTYFQDRQQDASR-VLELSGLVSN-KRCYEGVHALL---DNGYQPRQLQVLV 300 P D L Y+ +R +R + G+VS R G H LL + Y P LQ Sbjct: 221 TPMD---LAVYWNERALPQARATVADCGMVSPLPRQGGGFHELLPHIEQKYGPTPLQAY- 276 Query: 301 DALPVA-----PGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLT 355 AL VA P L + E TG+GKTE AL A ++ A LPT ATAN M Sbjct: 277 -ALEVAGRDSGPRLFIFEDVTGAGKTEAALLAAHAVMAGGEAHGFYIGLPTMATANGMYA 335 Query: 356 RMEASASHLFSS-----PNLILAHG----NSRFNHLFQSIKSRA----ITEQGQEEAWVQ 402 RM AS LF P+L+LAHG F H + R + Q ++ Sbjct: 336 RMAASYRALFMDADTVVPSLMLAHGARGIQDAFLHSIGLERGRDGESDAADGEQPDSGAF 395 Query: 403 CCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMN 462 C WL+ + KK L GV T+DQ L++VLP KH+ +R LG+GR+VLI DEVHAYD Y Sbjct: 396 CAAWLADNRKKSLLAPCGVGTLDQALLAVLPAKHQCLRLLGLGRNVLIADEVHAYDPYTT 455 Query: 463 GLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTD-PVENNSAYPL-INWRGVN 520 LLE +L QA +GG ILLSATLP + KQ L + PV SA PL + R N Sbjct: 456 RLLETLLTFQAGLGGCAILLSATLPRRIKQGLAAAFCRGAGYPVPAVSADPLPLATRLAN 515 Query: 521 GAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVA 580 G LA L ++ +P L+R++A AG L+CN VD A Sbjct: 516 GVFTETPLAQTRTLSVAVTLCHDPA---------EALDRLVAVHTAGGCAILLCNTVDRA 566 Query: 581 QVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNV--GRILVATQVV 638 L E D+ LFHARF L DR E RV++ FGK + G+ILVATQV+ Sbjct: 567 MAARNLLAE-RLPPADVLLFHARFALCDRLAIEERVLAIFGKGSTTEIRRGKILVATQVI 625 Query: 639 EQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLP-----DGEGY 693 EQSLDVD D+L+T+ P +L+ QR GR RH+RK+RPAGF P +L P G G+ Sbjct: 626 EQSLDVDADFLVTELAPMELVLQRAGRCQRHNRKWRPAGFVGPAVLVLSPPAVDEPGPGW 685 Query: 694 GRHE-----HIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGN 748 G E +Y V+WRT Q + L P R+ ++ YD + P + + Sbjct: 686 GEAELGKGLFVYPGHDVLWRTAQLLARWERVEL--PRDARELVEGAYDADALPTPAALQS 743 Query: 749 GMDK-FESAECEKRFKARKVLQWAEEYS 775 DK A EK L++++ Y Sbjct: 744 AEDKQTGKASAEKSLALFNGLEFSQGYG 771 >UniRef50_B8GIV7 CRISPR-associated helicase Cas3 n=1 Tax=Methanosphaerula palustris E1-9c RepID=B8GIV7_METPE Length = 912 Score = 324 bits (831), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 253/778 (32%), Positives = 366/778 (47%), Gaps = 87/778 (11%) Query: 10 YWGKSSKS--LTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWL 67 YWGK+ + KG HLL+YHCLDVAAV +Q +L + F + +V + Sbjct: 11 YWGKAQREGEPEKGAGYHLLVYHCLDVAAVGQKLLEQDPLLMHRFTALTGFNDDQVLHLI 70 Query: 68 LFFIALHDIGKFDIRFQYKSAESWLKLNP-ATPSLNGPSTQMCRKFNHGAAGLYWFNQDS 126 F +ALHD+GKF RFQ L P L G H + LY F QD Sbjct: 71 PFLLALHDLGKFSDRFQ--------NLKPDLMELLQGNRGSRRYPIRHDSMALYLFEQDI 122 Query: 127 LSEQSLGDFFSFFDAAPHPYESWF----PWVEAVTGHHGFILHSQDQDKSRWEMPASLAS 182 ++F P+ + WF P AV+GHHG + + + S+ S Sbjct: 123 RDLAWKKNWFWMDHDLPYAEDEWFEIFAPLFRAVSGHHG--------EPPQHDETVSVDS 174 Query: 183 YAAQDKQAREEWISVLEALFLTPAGLSINDIPP------------DCSSLLAGFCSLADW 230 +A +V A L +G PP S LLAG +L+DW Sbjct: 175 LFLDGDRAAARDFAVQAATLLLGSG----SYPPIEYSEGWFEQFSTASWLLAGLVTLSDW 230 Query: 231 LGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNG 290 LGS T F F +A + + Q +DA R + + C G+ L Sbjct: 231 LGSNRTF--FPFQTEAMDLAVYWKNFAQKGAEDAVRDAGVLPATVSSNC--GMAGLFPPD 286 Query: 291 YQPR-------QLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFA 343 P+ Q + +L P LT+IE TG GKTE AL A +L++ + + Sbjct: 287 LPPKITSPSPIQTYLSSCSLTPEPRLTIIEETTGGGKTEAALVLAHRLMNYGCGEGIFMG 346 Query: 344 LPTQATANAMLTRMEASASHLFSS---PNLILAHGNSRFNHLFQSIK------SRAITEQ 394 LPT ATA+++ R+ + +++ +++LA + LF+ S + Sbjct: 347 LPTMATADSLYGRIAQTYQRMYTGDQRASVVLATSARDLSDLFKKSVLPPGQWSHEQYKP 406 Query: 395 GQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEV 454 G+E A C WL+Q+ KK L Q+GV TIDQ L++VLP +H+ +R LG+ R++LIVDEV Sbjct: 407 GEETASATCTIWLAQNRKKALLAQVGVGTIDQALMAVLPFRHQSLRLLGLARNILIVDEV 466 Query: 455 HAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTY--GL-HTDPVENNSAY 511 HAYD YM+ +L +LK QA GGS ILLSATL M Q+Q L + GL + Y Sbjct: 467 HAYDPYMHTVLCGLLKFQAAFGGSAILLSATLTMAQRQDLTSAFCAGLGRRAKTLTDETY 526 Query: 512 PLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVC 571 PLI + + + ++ + + D D+ LE+++ AA G VC Sbjct: 527 PLITMATAQDVTETPIDSSAAR------VRTVRVQMVDDSADV--LEQIVRAAGDGRCVC 578 Query: 572 LICNLVDVAQVCYQRLKELNNTQVD---IDLFHARFTLNDRREKENRVISNFGKNGKRNV 628 + N +D A + L NT+++ + LFHARF L DR + E +V+ FGK + Sbjct: 579 WVRNTIDDAINAFNEL----NTRLESRQVLLFHARFALGDRLDIEKKVLDTFGKESLDPI 634 Query: 629 --GRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATIL 686 G +LVATQVVEQSLD+DFD +IT P DL+ QR GRLHRH R R + +A L Sbjct: 635 RRGMVLVATQVVEQSLDLDFDLMITDLAPMDLIIQRAGRLHRHPRGDRGEAVMVVLAPPL 694 Query: 687 --LPDGEGYGR----HEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDA 738 PD + Y R ++Y N +W T Q ++ + PD R ++ ++ D Sbjct: 695 TRTPDPDWYKRVFPKGGYVYPNHGQLWLTAQLLD--TKGKIVMPDGARDLIEGVFGDG 750 >UniRef50_B3E5V3 CRISPR-associated helicase Cas3 n=3 Tax=Deltaproteobacteria RepID=B3E5V3_GEOLS Length = 906 Score = 322 bits (824), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 260/831 (31%), Positives = 400/831 (48%), Gaps = 100/831 (12%) Query: 1 MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSK 60 M+P+ YWGK+ K G HLL YHCLDVAAV +D L + ++ Sbjct: 1 MQPY---FQYWGKAEKD---GLRYHLLPYHCLDVAAVGWLLFDPEKPLCKRLAKQLEIAP 54 Query: 61 QRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGL- 119 ++ W+ FF+ LHDIGKF + FQ + + + L P+++ + H + G Sbjct: 55 AHLQRWITFFLCLHDIGKFAVVFQGQ-------VTGLSDDLVKPNSRKRYEERHDSLGYC 107 Query: 120 YWFNQDSLSEQSLGDFFSFFDAA--PHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMP 177 W +D L ++ + F + H + W++ VTGHHG I D + + Sbjct: 108 LWRAEDGLRDRLEMEDSCFLSRSNSRHLKLALDIWMQIVTGHHG-IPPKTDLHLTNY--- 163 Query: 178 ASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSL------LAGFCSLADWL 231 + +QD +A +++ + +F+ +++ C+ L LAG LADWL Sbjct: 164 -----FDSQDNEAAWQYLLEISRMFVVDEMVAVLSDKTFCTRLKSSSWILAGLVVLADWL 218 Query: 232 GSWTTTNTFLFNEDAPSDINALRTYFQDRQQD-ASRVLELSGLVSNKRC-YEGVHALLDN 289 GS ++F + E + D Y+Q+ A +E + L+ + Y + L + Sbjct: 219 GSSRLPDSFCYQEISLDD------YWQNNALAFAEMAVEQAQLIPSPVAPYLNIQNLFNF 272 Query: 290 GYQPRQLQVLVDALPVAPG--LTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQ 347 P LQ + + +A G L ++E TG+GKTE AL A +L+ AD + ALPT Sbjct: 273 ITTPTPLQQWAENVELASGNQLFILEDVTGAGKTEAALILAHRLMANGFADGLYVALPTM 332 Query: 348 ATANAMLTRMEASASHLFS---SPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAW---- 400 AT+NAM R+ L+ +P+L+LAHG + F+ +S ++ E G+ + Sbjct: 333 ATSNAMYERLGKVYRRLYEDDHAPSLVLAHGARHLSEAFR--ESLSMPEAGESRKYDHDE 390 Query: 401 ----VQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHA 456 C WL+ S KK L ++GV T+DQ L++VLP +H+ +R LG+ R +LI+DEVHA Sbjct: 391 ETIEAVCSAWLADSRKKALLAEVGVGTLDQALLAVLPARHQSLRCLGLARKILIIDEVHA 450 Query: 457 YDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTY----GLHTDPVENNSAYP 512 YD YMN LL+++L+ A GGSVI+LSATLP + + L + G ++ YP Sbjct: 451 YDPYMNKLLQSLLEYHAAQGGSVIMLSATLPFSMRVEYLCAFCKGAGTEVSVLKKTEQYP 510 Query: 513 LINWRGVNGAQRFDLLAHPEQ-LPPRFSIQPE-PICLADMLPDLTMLERMIAAANAGAQV 570 L+ F ++H E L R ++ + L D + + LE + A G V Sbjct: 511 LVT--------HFSSISHLETGLSTRQEVERTVTVALLDTVDN--ALEHIRQAVEQGQCV 560 Query: 571 CLICNLVDVAQVCYQ---RLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRN 627 C + N V A Y+ R K L+ + + LFH+RF + DR+ E +S FGK Sbjct: 561 CWVRNTVGDAIKTYRLLARQKWLDKER--LSLFHSRFAMIDRQRIELETLSLFGKESTAE 618 Query: 628 V--GRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGF------- 678 + GR+L+ATQVVEQSLD+DFD +I+ P DLL QR+GR HRH R Sbjct: 619 MRRGRVLIATQVVEQSLDLDFDMMISDLAPIDLLIQRVGREHRHIRDADGTRLEHEGAVD 678 Query: 679 --EIPVATILLPDGEGYGRH----------EHIYSNVRVMWRTQQHIEELNGASLFFPDA 726 E PV I P + +Y NV +W TQ+ + + L P Sbjct: 679 KRETPVFYIFGPSASETPAENWLKAVLPGTQKVYQNVGQLWLTQKLLAK--AGKLSMPGD 736 Query: 727 YRQWLDSIY-DDAEMDEPEWVGNGMDKFESAECEKRFKAR-KVLQWAEEYS 775 R ++ +Y D+A+ P+ + DK E+ K AR L+ A+ YS Sbjct: 737 ARSLIEGVYSDEAQATIPDSLQTLSDKAEAEAYAKLGIARMNALKLAKGYS 787 >UniRef50_Q2RY15 CRISPR-associated helicase, Cas3 family n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RY15_RHORT Length = 920 Score = 311 bits (796), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 269/815 (33%), Positives = 375/815 (46%), Gaps = 131/815 (16%) Query: 5 KYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVK 64 ++I YWGK+ + G H L YH LDVAA D L N R LS Q + Sbjct: 32 RWILGYWGKARPARADGPAWHPLAYHGLDVAAAMAALLDLRPALLNAIARAAGLSPQDAR 91 Query: 65 AWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQ 124 L+ A HD+GKF FQ K + PA P + G S + HG GL + Sbjct: 92 RALILLAAFHDLGKFAENFQQKVEIP--GIIPAAPGVIGSSQR-----GHGGVGLRLWE- 143 Query: 125 DSLSEQSLGDFFSFFDAAPHPYE----SWFPWVEAVTGHHGFILHSQDQDKSRWEMPASL 180 + A P P W++A GHHG + S+ + PA Sbjct: 144 ------------TAVQAGPAPLSVIAARLGQWIDAAFGHHGAPVESKGFHLAEALSPA-- 189 Query: 181 ASYAAQDKQAREEWISVLEAL--FLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTN 238 AR++ ++ + FL S++ D +AG LADW+GS T Sbjct: 190 ---------ARDDALAFVNDCLGFLPMPEASVDGA--DEIWQVAGLLILADWIGSNQTWF 238 Query: 239 TFLFNEDAPSDINALRTYFQD--------------RQQDASRVLELSGLVSNKRCYEGVH 284 + AP D ++L Y+Q R+ + L+LS L+ + Sbjct: 239 PY-----APPD-SSLEAYWQKAQGNAKDALAKAALREAPIAPGLDLSDLIGPQ------- 285 Query: 285 ALLDNGYQPRQLQ--VLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIF 342 +P LQ +A P P L +IE TGSGKTE AL A +L+ A+ + + Sbjct: 286 ------ARPSPLQRFAAAEAPPREPTLYIIEDLTGSGKTEAALLLAHRLMAAGQAEGLYW 339 Query: 343 ALPTQATANAMLTRMEASASHLFS-----SPNLILAHGNSRFNHLFQSIK---------S 388 ALP++ATANA+ R+ A LF SP ++LAHG+ N LF + + Sbjct: 340 ALPSKATANALYARLAAVYRRLFQPDTDISPWIVLAHGDRDLNPLFADSRRPGGEYYGET 399 Query: 389 RAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSV 448 R EQ E QC +L+ KK FLGQIG+ TIDQ L+SVLPV+H+ +R + R V Sbjct: 400 RLADEQSAE---AQCAAFLADDMKKTFLGQIGIGTIDQALLSVLPVRHQSLRICALSRRV 456 Query: 449 LIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENN 508 L+VDE HAYD Y+ L +L+ + +GGS I+LSATL Q++ L Y N Sbjct: 457 LVVDEAHAYDDYVQAELARLLEFHSALGGSAIVLSATLTKSQRRDLCRRYQRTRGGDLPN 516 Query: 509 S--------AYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERM 560 + A+PL+ L Q R + + P L + LE + Sbjct: 517 AGAVKLTEDAFPLVTRVSAQS------LVETPQDAARGTRRDLPFRLFSTVDQ--ALESL 568 Query: 561 IAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNF 620 I AA+AG I N V A QRL+ L VD+ LFHARF L DR EN + F Sbjct: 569 IDAASAGLCGVYIRNTVTDAIAAVQRLRALAPPGVDVALFHARFALGDRLAHENNALGRF 628 Query: 621 GKNGKRN--VGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRH-HRKYRPAG 677 GKN + GRILVATQVVEQSLDVDFD ++T CP DLL QR GRLHRH R RP Sbjct: 629 GKNSTPDDRRGRILVATQVVEQSLDVDFDVMVTDLCPMDLLIQRAGRLHRHADRPSRPP- 687 Query: 678 FEIPVATILLPDGEG----------YGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAY 727 PV +++ P EG + + + +Y +V +WRT ++E G L + Sbjct: 688 ---PVLSVVAPPTEGAITAQWYAALFPQGQFVYRDVGQLWRTLSVLKERGGLPLLS-ASP 743 Query: 728 RQWLDSIYDDAE------MDEPEWVGNGMDKFESA 756 R +++++ D+ +++P + G + E A Sbjct: 744 RLLIEAVFGDSAAPLPPTLEQPSFKAEGKRQAERA 778 >UniRef50_D2C268 CRISPR-associated helicase Cas3 n=3 Tax=Enterobacteriaceae RepID=D2C268_DICD5 Length = 917 Score = 298 bits (764), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 259/791 (32%), Positives = 374/791 (47%), Gaps = 107/791 (13%) Query: 9 HYWGKSSKSLTKGNDI--HLLIYHCLDVAAVADCWWDQSVVLQNTF-CRNEM----LSKQ 61 HYWGK+ S ND HLL YHCLDVAA +W +V N F R+ M L ++ Sbjct: 16 HYWGKAQSSSENENDAPYHLLPYHCLDVAACG--YW---LVKHNRFHVRDHMQSLGLEEE 70 Query: 62 RVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYW 121 WL +F+A HDIGKF FQ L NP P + ++ H + GL W Sbjct: 71 SAALWLAWFLAWHDIGKFARSFQR------LYQNPDAPLVR--ASGQASPVRHDSLGL-W 121 Query: 122 FNQDSLSEQSLGDFFSFFDAAPHPYESWFP---WVEAVTGHHGFILHSQDQDKSRWEMPA 178 + L E+ D S+ A H + + W+ + GHHG +D Sbjct: 122 LWRHRLYERWEHDA-SWLPAVSHADKFHYVMDLWLRLMCGHHGQPPLEEDN--------- 171 Query: 179 SLASYAAQDKQAREEWISVLEALF--LTPAGLSINDIP-----PDCSSLLAGFCSLADWL 231 S ++ D A + +++ L +F LT +D P S LAG LADW Sbjct: 172 SALAFHPDDILAAQAYLTDLRTVFPQLTAFPDEFSDRPWRALLQQRSWSLAGCVVLADWA 231 Query: 232 GSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGY 291 GS + F + + + R Y + ++A VL L + ++G+ AL Sbjct: 232 GS--SQADFPYCSQPMALADYWREYALPQAENA--VLRLPA-ACDVAPFQGMQALFPFIT 286 Query: 292 QPRQLQ---VLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQA 348 QP LQ + VD P L ++E TG+GKTE AL +L+ D + LPT A Sbjct: 287 QPTPLQQQAMTVDISTPGPQLFLLEDVTGAGKTEAALVLTHRLLSAGYGDGLYVGLPTMA 346 Query: 349 TANAMLTRMEASASHLFSS---PNLILAHGNSRFNHLF--------QSIKSRAITEQGQE 397 TANAM R+ + LFS P+L+LAHG F Q+ R ++G Sbjct: 347 TANAMCRRLSKAYRTLFSEFGLPSLMLAHGARNMVADFRLSLWGAEQTGPVRYGPDEGSA 406 Query: 398 EAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAY 457 A C QW + S KK L +GV T+DQ L++V+P +H+ +R LG+ +L++DEVHAY Sbjct: 407 SA--ACNQWFADSRKKALLADVGVGTLDQALMAVMPFRHQSLRLLGLSGKILLLDEVHAY 464 Query: 458 DTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTY--GLHTDPVE--NNSAYPL 513 D Y + LLE +L A GGS I+L+ATL Q+++L+ + G+ E + YP Sbjct: 465 DAYTSRLLENLLAFHASQGGSAIILTATLSASQRERLVQAFYRGMQQPAGELAEQAGYP- 523 Query: 514 INWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLI 573 W AQ + H + R ++ + +A + +ER+ A +G VC I Sbjct: 524 --WFTYVNAQ----VLHEWPVETRAEVR-RTVAVAWLSHRADAIERICQAVASGQCVCWI 576 Query: 574 CNLVDVAQVCYQRLKELNNTQV-DIDLFHARFTLNDRREKENRVISNFGK--NGKRNVGR 630 N VD A +Q+L + D+ LFH+RF DR E+R I FGK +G+ G+ Sbjct: 577 RNTVDDAIAAWQQLCQSGEIAADDVLLFHSRFAFCDRMAIEDRAIERFGKHSDGETRRGK 636 Query: 631 ILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKY----RPAGFEIP----- 681 +L+ATQVVEQSLD+D D +I+ P DLL QR GRL RH R+ +P ++P Sbjct: 637 VLIATQVVEQSLDIDVDVMISDLAPVDLLIQRAGRLQRHIRRADGSCKPPSDDMPARDER 696 Query: 682 -------VATILLPDG---------EGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPD 725 +A PD G G +YS+ V+WRTQ + E +L P+ Sbjct: 697 AAPVLWVLAPAWQPDAGRDWLGAELRGTGA---VYSHQAVLWRTQAILRERG--ALRMPE 751 Query: 726 AYRQWLDSIYD 736 R +DS+Y+ Sbjct: 752 EARLLIDSVYE 762 >UniRef50_B4RSJ9 CRISPR-associated helicase Cas3 n=3 Tax=Gammaproteobacteria RepID=B4RSJ9_ALTMD Length = 915 Score = 298 bits (764), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 246/778 (31%), Positives = 377/778 (48%), Gaps = 79/778 (10%) Query: 10 YWGKSSK-SLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLL 68 YWGK+ K S G D HLL YHCLDVAAV W D L + + + K+ + Sbjct: 11 YWGKAKKDSEQSGADYHLLPYHCLDVAAVCYEWLDTDTKLAGELSDYLAIPRDQFKSLMS 70 Query: 69 FFIALHDIGKFDIRFQ--YKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQ-- 124 FF+A+HD+GKF FQ Y S + L L + S +G + H G +++ + Sbjct: 71 FFMAMHDLGKFASAFQALYSSDSTKLILTNSRKSYDG------SHYRHDRLGTWFWRKLR 124 Query: 125 DSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYA 184 + E+ + + ++ + GHHG + + P Sbjct: 125 QQICERCTEGHGLNRRQLKYLTKPLNIIMDCMLGHHGVPVELDE--------PGIEGFTE 176 Query: 185 AQDKQAREEWISVLEALFLTPAGLSI---NDIP-----PDCSSLLAGFCSLADWLGSWTT 236 +Q+ A E + L LF P + ND S +AG L DW+GS Sbjct: 177 SQNLSASEAFTLDLITLF-QPEFTEVMIQNDSDWLVKLKQVSWHIAGIAVLCDWIGSDQA 235 Query: 237 TNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQL 296 ++ +E P DI Y+Q ++ A R LE L+ + + G+ P L Sbjct: 236 DFPYVSDE-MPLDI-----YWQTAKKQAKRALESKQLIRSFNVAPFLSVENSFGFSPTPL 289 Query: 297 QVLVDALPVA--PGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAML 354 Q + + + P L ++E TG+GKTE AL A +L+++ +A F LPT AT+NAM Sbjct: 290 QSWAEKVEITDTPQLFILEDVTGAGKTEAALTLAHRLMEKGVASGFYFGLPTMATSNAMY 349 Query: 355 TRMEASASHLFSS----PNLILAHGNSRFNHLFQ-----SIKSRAITEQGQEEAWVQCCQ 405 R+ ++ S P+++LAHG N LFQ S K + + A +C + Sbjct: 350 KRVTEHYLSMYESVAKKPSIVLAHGAREMNPLFQQTVITSGKDNSDYNAEDKTALAECHR 409 Query: 406 WLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLL 465 WL+ S KK L +GV TIDQ L++VLP +H+ +R LG+ VL+ DEVHA D YM LL Sbjct: 410 WLADSRKKALLAPVGVGTIDQALLAVLPKRHQSLRLLGLHNKVLVFDEVHAADEYMFELL 469 Query: 466 EAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTD-----PVENN-SAYPLINWRGV 519 E +LK GGSVILL+ATLP+KQ++KL++ + + T P + + S +PL V Sbjct: 470 EGLLKLHLHQGGSVILLTATLPLKQRKKLVEIWQVATGSEVILPKKTSFSDFPLAT--HV 527 Query: 520 NGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDV 579 + + H +P R ++ + + + + + +ER+I +G V + N VD Sbjct: 528 APGTKNPVQEH--TMPSREAVS-RAVTVTFLHDEASCIERIINTIESGVCVVWVRNSVDD 584 Query: 580 AQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKN---GKRNVGRILVATQ 636 A Y L + D LFH+RFTLNDR E +V++ FGK+ G R G++L+ATQ Sbjct: 585 ALAAYSTLSTQMSNPDDCILFHSRFTLNDRNLIEAKVLNVFGKHADAGSR-AGKVLIATQ 643 Query: 637 VVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHR----KYRPAGFE---IPVATILLPD 689 V ++SLD D D +I+ CP D L QR GRLHRH R K+ P + P + P Sbjct: 644 VFQESLDADCDLMISDICPIDDLIQRAGRLHRHSRDKQGKFTPGKPDQRGQPELIVHAPH 703 Query: 690 -----GEGYGRHE-----HIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDD 737 GE + R + ++Y + +W + + +L ++ P+ RQ ++++Y D Sbjct: 704 WSDKPGEDWVRQDFRNTSYVYPSAGRLWLGMRELLKL--GTMRMPENARQLIEAVYSD 759 >UniRef50_Q12YB2 CRISPR-associated helicase Cas3 n=2 Tax=cellular organisms RepID=Q12YB2_METBU Length = 921 Score = 296 bits (759), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 249/782 (31%), Positives = 364/782 (46%), Gaps = 116/782 (14%) Query: 11 WGKSSKSLTKGN-DIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLF 69 WGKS + N + HLL+YH LDVAA + +L F L +++ + + F Sbjct: 5 WGKSKSATEYDNSNYHLLVYHGLDVAATGRTILQKDKLLLQKFTDIISLDEEKTISLISF 64 Query: 70 FIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQ---DS 126 +A+HDIGKF RFQ E LN L + H + GL+ + + + Sbjct: 65 CLAVHDIGKFSERFQNLQPE---LLN----DLRDHDSDKSYTVRHDSMGLHLWKEIWSTA 117 Query: 127 LSEQSLG---DFFSFFDAAPHPYESW----FPWVEAVTGHHG---------FILHSQDQ- 169 E LG + + FD W PW+ +VTGHHG + S D Sbjct: 118 FDENWLGLDKEIYDKFD--------WNDLIGPWMNSVTGHHGKPPEYVHNGITISSSDLF 169 Query: 170 DKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPA----------GLSINDIP---PD 216 EM +S AA S+L + L+ A I+D+ Sbjct: 170 TDEDIEMASSFVKEAA----------SLLLSDALSDAFEFTSCSEEQAYDIDDMILAFKR 219 Query: 217 CSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQ-QDASRVLELSGLV- 274 S L+AG ++DW+GS ++ +E L+ Y +A + LE +G+ Sbjct: 220 TSWLIAGLAIVSDWIGSSEEHFEYISSE------IPLKEYLDKYALPNAEKALEDAGIYP 273 Query: 275 SNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPG--LTVIEAPTGSGKTETALAYAWKLI 332 S G+ L + P +Q V VA G L ++E TGSGKTE AL A +L+ Sbjct: 274 STPSTITGMDELFPDIVVPSPMQEHVSNCDVAAGPQLFILEDATGSGKTEAALCLAHRLM 333 Query: 333 DQQIADSVIFALPTQATANAMLTRMEASASHLFSS---PNLILAHGNSRFNHLFQSIKSR 389 + +A LPT AT+NAM R+ S +++ P+L+LAHG + + F+S Sbjct: 334 AKGLAQGAFVGLPTMATSNAMYERLGNSYQRMYAKGERPSLVLAHGQNYLSDAFRSSIGF 393 Query: 390 AITEQG--------QEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRG 441 ++ G E QC W++ + KK L +GV TIDQ L+++L H+ +R Sbjct: 394 QNSKNGYYGDGSSGDETIQAQCSAWIADNRKKALLADVGVGTIDQALMAILQSNHQSLRL 453 Query: 442 LGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTY--G 499 LG+ R+VLIVDEVHAYD YM+ LL ++L+ +GGS ILLSATLP K +Q L+ + G Sbjct: 454 LGLSRNVLIVDEVHAYDPYMHTLLCSLLEFHVSLGGSAILLSATLPQKHRQGLISHFCKG 513 Query: 500 LHTDPVE-NNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLE 558 L + + +N Y L+ N + P E + L D +E Sbjct: 514 LDSPTMSASNEEYALVTHVSENEISETPIGTRP---------GTERTVNVEFLHDEPSVE 564 Query: 559 -RMIAAANAGAQVCLICNLVDVAQVCYQRL-KELNNTQVDIDLFHARFTLNDRREKENRV 616 ++I + G C I N VD A Y+++ EL N V LFHARF + DR + EN V Sbjct: 565 DKLIKCSKEGKCCCWIRNTVDDAIEAYEKIVSELGNDNV--LLFHARFAMGDRLKIENDV 622 Query: 617 ISNFGKNGKRNV--GRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYR 674 + FGK RN G++L+ATQVVEQSLD+DFD++++ P DLLFQR GRL RH R + Sbjct: 623 LETFGKRSDRNCRKGKVLIATQVVEQSLDIDFDYMVSDLAPMDLLFQRAGRLQRHPRDKK 682 Query: 675 PAGFE-----IPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQ 729 + E P+ IL P+ + +V W + G + +P + Sbjct: 683 GSISENDERGRPLLGILAPE---------LSKDVTENWYSDM----FKGGAYVYPSHGKL 729 Query: 730 WL 731 WL Sbjct: 730 WL 731 >UniRef50_Q04QC1 Helicase n=2 Tax=Leptospira borgpetersenii serovar Hardjo-bovis RepID=Q04QC1_LEPBJ Length = 931 Score = 292 bits (747), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 253/824 (30%), Positives = 378/824 (45%), Gaps = 118/824 (14%) Query: 10 YWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLF 69 YWGK+ K +GN +LL YHC DVAAV + + Q+ L F R + K +F Sbjct: 11 YWGKADK---EGN-YYLLAYHCFDVAAVGEVYLSQNETLCTHFSRKLGIDPITFKNLFVF 66 Query: 70 FIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSE 129 F+ LHD+GKF FQ L+ + P + S + H + G ++ + L + Sbjct: 67 FLVLHDLGKFSDCFQSLIPNVKSALDNSNPPIGSYSIR------HDSLGYIFWGKWILKD 120 Query: 130 QSLGDFFSFFDAAPHPYESWFPW-------------------VEAVTGHHGFILHSQDQD 170 + G++ ++W W + VTGHHG ++ Sbjct: 121 ERFGNYDGLLTE-----QNWLSWNGLRSSKDKSYFTEFLDVLIRCVTGHHG---RPPSKN 172 Query: 171 KSRWEMPASLAS-YAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSL------LAG 223 + SL S + D+ A ++ + + L+P D +S LAG Sbjct: 173 GYSGQTAVSLDSHFTEADRSAALDFSKEVNRI-LSPNLNFDGDFKTLYNSALRISFWLAG 231 Query: 224 FCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGV 283 L DW+GS F +++ P D+ T ++ A + SGL+ +K + Sbjct: 232 LSVLCDWIGS--NAEIFKYHQ-TPIDLEEYYTKISLKR--ALDAINRSGLLPSKITFNKD 286 Query: 284 H-ALLDNGYQPRQLQVLVD--ALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSV 340 H + + +P LQ A+P +P L ++E TGSGKTE AL +L+ + Sbjct: 287 HFRIFEYLREPTPLQKFCSEVAIPDSPSLFILEDVTGSGKTEAALILTHRLMQKSAYSGF 346 Query: 341 IFALPTQATANAMLTRMEASASHLF---SSPNLILAHGNSRFNHLFQS--IKSRAI---- 391 LPT ATAN M RM +L+ S P+L+LAHG + FQS I AI Sbjct: 347 YVGLPTMATANGMYQRMSGVYRNLYTKESIPSLVLAHGARNLSDSFQSSVISDNAILTDR 406 Query: 392 ------TEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIG 445 + +E A C WLS + KK L GV TIDQ L+S+L K + +R G+ Sbjct: 407 NYSLQLDKDPEESASAICNVWLSDNQKKSLLADAGVGTIDQALLSILSTKFQSLRMFGLS 466 Query: 446 RSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTY--GLHTD 503 R VLI+DEVH+YD YM L+ +LKAQA +G SVILLSATLP ++ +++ GL T+ Sbjct: 467 RKVLILDEVHSYDPYMVELICCLLKAQAKIGASVILLSATLPKILRKTFSESFALGLDTE 526 Query: 504 PVENNSA-YPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPE---PICLADMLPDLTMLER 559 + S YPL++ + E++P S + E + + + +L++ Sbjct: 527 LQDLKSVEYPLVSLISDR--------SEVEEIP--ISTRKEVSRKLNVKFLFNQEQVLQK 576 Query: 560 MIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISN 619 ++ +N G VC I N V A + L QV LFHARF + DR E++++ N Sbjct: 577 ILEMSNQGRCVCWIRNTVSDASQAFSFLHSKLGDQV--ILFHARFVMGDRLSIESQILEN 634 Query: 620 FGKNGKRNV--GRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRK----- 672 FG +N G+++VATQVVEQSLD+DFD +IT P DL+ QR GRLHRH R Sbjct: 635 FGVRSDQNSRKGKVVVATQVVEQSLDLDFDCIITDLAPIDLILQRAGRLHRHCRDIFGNA 694 Query: 673 --------------YRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNG 718 + P E P + G +YS+ +W T + ++E G Sbjct: 695 KQGLDERGEPILWIFSPEPIEDPTSNWFSQFSRG---GSMVYSDHGRLWLTAKLLQERKG 751 Query: 719 ASLFFPDAYRQWLDSIYD-DAEM-----DEPEWVGNGMDKFESA 756 + P+ R ++S+Y D E+ + V N K ESA Sbjct: 752 WRM--PEDARNLIESVYGIDVEIPQSFRENQFKVKNDKKKLESA 793 >UniRef50_C7JIG3 CRISPR-associated helicase Cas3 n=8 Tax=Acetobacter pasteurianus RepID=C7JIG3_ACEP3 Length = 904 Score = 282 bits (722), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 283/877 (32%), Positives = 405/877 (46%), Gaps = 113/877 (12%) Query: 10 YWGKSSKSLTKGNDI----HLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKA 65 +WGK+ + + + ++ H LI H LDVAAVA ++L + C + +Q Sbjct: 13 FWGKA-RPVAEAEEVISSMHPLIAHMLDVAAVA-------ILLPESKCLG-LDCRQ---- 59 Query: 66 WLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQD 125 L IALHDIGK FQ K E W P P + + H A GL+ D Sbjct: 60 -LGMLIALHDIGKLTPAFQSKVPECW----PEQAFGRCPDEVVMSR--HDADGLFLL--D 110 Query: 126 SLSEQSLGDFFSF----FDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLA 181 + + L F D +P + + AV GHHG + S D++K + LA Sbjct: 111 HICKDQLAPLFGTNADGLDWSPTDKKQLW---RAVAGHHGQPV-SSDENKFQNADLKLLA 166 Query: 182 SYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSL---LAGFCSLADWLGSWTTTN 238 YA + + VL +F P S + + D L LAG ADW+GS Sbjct: 167 PYA-------HKLVRVLLDIFRPPPIPSYSFLE-DLLQLEWRLAGLTVQADWIGSRQEWF 218 Query: 239 TFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQV 298 ++ ED + R Q A LS +N ++G+ L + +Q Sbjct: 219 PYVRPEDVADASGYFWNHALHRAQAAIASAGLSP--ANISPFQGMARLFPHICNSSPIQA 276 Query: 299 L--VDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTR 356 L V + P P L VIE TGSGKTE AL A +L+ A + ALPT ATANAM R Sbjct: 277 LLEVASFPADPTLIVIEDMTGSGKTEAALVAAHRLMASGHASGLFVALPTMATANAMFDR 336 Query: 357 MEASASHLF---SSPNLILAHGNSRFNHLFQSIKS------RAITEQGQEEAWVQCCQ-W 406 + + LF S P+L LAHG + + F S+ + ++G+++A CC W Sbjct: 337 LAIAYRSLFQPSSHPSLALAHGRALLDERFVSVLAPDDALDNTTVKKGRDDAAEVCCSAW 396 Query: 407 LSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLE 466 L +++ L Q+GV TIDQ L++VLPV+ +R G+ VL+VDE HAYD YM + Sbjct: 397 LGSESRRALLAQVGVGTIDQALMAVLPVRFATVRQAGLAGKVLLVDECHAYDPYMQEEMV 456 Query: 467 AVLKAQADVGGSVILLSATLPMKQKQKLLDTY--GLHTDPVENNS--AYPLINWRGVNGA 522 A+L+ A +GGS ILLSATL +QKL+ + GL S AYPL+ G +GA Sbjct: 457 ALLRFHAAMGGSAILLSATLTKSVRQKLVTAFREGLRQKESVGLSCMAYPLVTLVGRDGA 516 Query: 523 QRFDLLAHPEQLP--PRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVA 580 E+LP PR + I + M +++ + AA GA V + N VD Sbjct: 517 ---------EELPCAPRPGLA-RNIAVRQMSDASSIMAYVSDAAAQGAAVAWVRNTVD-- 564 Query: 581 QVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKR-NVGRILVATQVVE 639 K L +D+ +FHARF + DR E V++ FGKNG + R+L+A+QV+E Sbjct: 565 -DVITSAKALEAEGLDVMVFHARFAMVDRLAIEREVLARFGKNGTTADRSRVLIASQVIE 623 Query: 640 QSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGF-EI------PVATILLPDGEG 692 QSLD+DFD L T P DL+ QR GRL RH R RP EI PVA PD + Sbjct: 624 QSLDLDFDVLCTDLAPMDLIIQRAGRLRRHERAQRPVDCDEICIFSPNPVAD---PDPQW 680 Query: 693 YGR----HEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGN 748 R +Y + ++WRT + ++ + PD R+ ++ D + D P + Sbjct: 681 ISRVLPGTAAVYRDPALLWRTAKVLQ--CKGQIRSPDMIRELIEEAADTS--DVPNGLMM 736 Query: 749 GMDKFESAECEKRFKA-RKVLQWAEEYSLQDN--DETILAVTRDGEMSLPLLPYVQTSSG 805 D+ E R A R +L + Y+ + + TR E PYV G Sbjct: 737 ASDEAEGKGRAARGAAIRNILNYDAGYTPDSALWEREVRISTRLEER-----PYVTVRLG 791 Query: 806 KQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFS 842 + DGQV+ + AL + VP KR+++ Sbjct: 792 V-MKDGQVWP-------WAALQQTSLAVPHERKRAWT 820 >UniRef50_C6C422 CRISPR-associated helicase Cas3 n=6 Tax=Enterobacteriaceae RepID=C6C422_DICDC Length = 912 Score = 282 bits (722), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 256/797 (32%), Positives = 366/797 (45%), Gaps = 119/797 (14%) Query: 9 HYWGK--SSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTF-CRNEM----LSKQ 61 HYWGK SS G HLL YH LDVAA +W +V N F R+ + L ++ Sbjct: 16 HYWGKAQSSSENENGAAYHLLPYHGLDVAACG--YW---LVKHNRFHARDHLQALGLHEE 70 Query: 62 RVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLY- 120 WL +F+A HDIGKF FQ L NP P + ST H + GL+ Sbjct: 71 HAALWLAWFLAWHDIGKFARGFQR------LYQNPDAPLVQ--STGQVSSARHDSLGLWL 122 Query: 121 WFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASL 180 W Q Q D+ A + W+ + GHHG D +L Sbjct: 123 WRYQLYDRWQQDADWLPTVSRADKFHHVMDLWLRLMCGHHGQPPVEDDN--------GAL 174 Query: 181 ASYAAQDKQAREEWISVLEALF--LTPAGLSIND-----IPPDCSSLLAGFCSLADWLGS 233 A + D A + +++ L +F LT + +D + S LAG LADW+GS Sbjct: 175 A-FHPDDILAAQAYLTDLRTVFPELTAFPDTFSDRRWRALLQQQSWPLAGCVVLADWIGS 233 Query: 234 WTTTNTFLFNEDAPSDINALRTYFQDRQ--QDASRVLELSGLVSNKRCYEGVHALLDNGY 291 + F ++ + AL Y+ Q S VL L + ++ ++AL Sbjct: 234 --SQADFPYH----AGPLALADYWHQHALPQAESAVLRLPA-ACHVAPFQSMNALFPFIT 286 Query: 292 QPRQLQ---VLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQA 348 QP LQ + VD P L ++E TG+GKTE AL +L+ D V LPT A Sbjct: 287 QPTPLQQQAMSVDINTPGPQLFLLEDVTGAGKTEAALVLTHRLLSAGFGDGVYVGLPTMA 346 Query: 349 TANAMLTRMEASASHLFS---SPNLILAHGNSRFNHLFQ----SIKSRAITEQGQEE--A 399 TANAM R+ + LF+ SP+L+LAHG FQ + + G +E A Sbjct: 347 TANAMYRRLATAYRMLFNEPGSPSLMLAHGARDMVTDFQLSLWAPEQTGPMRYGPDENSA 406 Query: 400 WVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDT 459 C QW + S KK L +GV T+DQ L++V+P +H+ +R LG +L++DEVHAYD Sbjct: 407 SAACNQWFADSRKKALLADVGVGTLDQALMAVMPFRHQSLRLLGFNGKILLLDEVHAYDA 466 Query: 460 YMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTY--GLHTDP--VENNSAYPLIN 515 Y + LLE +L A GGS I+L+ATL Q+++L+ + G+ P + + YP Sbjct: 467 YTSRLLENLLAFHASQGGSAIILTATLAASQRERLVQAFYRGVQQPPGTLAKQAGYPWFT 526 Query: 516 WRGVNGAQRFDLLAHPEQLPPRFSIQPEPIC-------LADMLPDLTMLERMIAAANAGA 568 V + L E +C L+ + ++ R +A AG Sbjct: 527 QVNVQALHEWPLATRAE------------VCRTVAVDWLSRSAEAIALIRRSVA---AGQ 571 Query: 569 QVCLICNLVDVAQVCYQRLKELNNTQV-DIDLFHARFTLNDRREKENRVISNFGK--NGK 625 VC I N VD A +++L + + D+ LFH+RF DR E+ + FGK +G+ Sbjct: 572 CVCWIRNTVDDAIAAWRQLCQCDEIAPDDVLLFHSRFAFCDRLAIEDTAVERFGKHSDGR 631 Query: 626 RNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKY------------ 673 G++L+ATQVVEQSLD+D D +I+ P DLL QR GRL RH R+ Sbjct: 632 ARRGKVLIATQVVEQSLDIDVDVMISDLAPVDLLIQRAGRLQRHIRRADGGCKRPDDAAP 691 Query: 674 ----RPAGFEIPVATILLPD----------GEGYGRHEHIYSNVRVMWRTQQHIEELNGA 719 RPA PV +L P+ G +YS+ V+WRTQ + E Sbjct: 692 RQDDRPA----PVLWVLAPEWQPDAGRDWLGAELRGTGAVYSHQAVLWRTQAILRERG-- 745 Query: 720 SLFFPDAYRQWLDSIYD 736 +L P+ R +DS+Y+ Sbjct: 746 ALRMPEEARLLIDSVYE 762 >UniRef50_D2TKK3 CRISPR-associated protein n=1 Tax=Citrobacter rodentium ICC168 RepID=D2TKK3_CITRO Length = 906 Score = 280 bits (717), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 251/843 (29%), Positives = 401/843 (47%), Gaps = 95/843 (11%) Query: 4 FKYICHYWGKSSKSLTKG-NDIHLLIYHCLDVAAVADCWWDQSVV--LQNTFCRNEMLSK 60 F I ++WGK+ + G +D HLL +H LDVAAV W ++ + L + F R M Sbjct: 24 FVSIFNFWGKTRQGEKDGGDDYHLLCWHSLDVAAVG-YWMVKNNIYGLADHFRRLGMTDI 82 Query: 61 QRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPS--TQMCRKFNHGAAG 118 ++ + + + HD GKF FQ + P LN P+ Q K +H G Sbjct: 83 EQAAQFFAWLLCWHDTGKFASSFQQLYSH---------PDLNVPAGRRQNYEKISHTTLG 133 Query: 119 LYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFP-WVEAVTGHHGFILHSQDQDKSRWEMP 177 YW LS+ + F P + W+ TGHHG + D + Sbjct: 134 -YWLWNTWLSD--CPELFPHSTLTPRKLKRVIAMWMPLTTGHHG-----RPPDGVQ---- 181 Query: 178 ASLASYAAQDKQAREEWISVLEALF---LTPAGLSIND---IPPDCSSLLAGFCSLADWL 231 L ++ QDK+A E+++ +ALF + P+ +D + S L++ LADW Sbjct: 182 -ELDNFLPQDKEAAREFLASAKALFPQIVIPSCWDEDDGIALFQQLSWLISAAVVLADWS 240 Query: 232 GSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGY 291 GS +T F A + TY+Q + A L + S + GV+ L Sbjct: 241 GS----STRFFPRIASK--MPVETYWQQALEKAKAALAIFPPSSGVAPFSGVNTLFPFIR 294 Query: 292 QPRQLQVLVDALPV---APGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQA 348 QP LQ V L + L ++E TG+GKTE AL +L+ A + F LPT A Sbjct: 295 QPTPLQQKVLTLDIHDAGAQLFILEDVTGAGKTEAALILTHRLMAAGKAKGLFFGLPTMA 354 Query: 349 TANAMLTRMEASASHLF---SSPNLILAHGN----SRFNHLFQSIKSRAITEQGQEEAWV 401 TANAM R+ S L+ S P+L+LAH RFN QSI S + G+ + Sbjct: 355 TANAMFDRLAQSWQALYQPGSRPSLVLAHSARGLMDRFN---QSIWSADLIGAGEPDERQ 411 Query: 402 QCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYM 461 C W + SNKK L ++GV T+DQ +++V+P KH +R LG+ +L+ DE+HAYD YM Sbjct: 412 GCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHAYDAYM 471 Query: 462 NGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTY----GLHTD-PVENNSAYP-LIN 515 + +LE++++ QA G + ILLSATL +Q+ +L+ + G H + P+ + YP L Sbjct: 472 SRILESLIENQARNGNTTILLSATLSQQQRDRLVAAFARGRGSHIEAPLLGHGDYPWLTQ 531 Query: 516 WRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICN 575 G R + R ++ + + + + + +ER+ AA+ G + I N Sbjct: 532 VTGTGVVSR--------HVATRKEVE-RCVKVGWLYSEQSCIERIEQAASEGQCIAWIRN 582 Query: 576 LVDVAQVCYQRLKELNNTQVD-IDLFHARFTLNDRREKENRVISNFGKN-GKRNVGRILV 633 VD A Y++L + I LFH+RF DR+ E +S FGK+ + G++L+ Sbjct: 583 SVDDAIRVYRQLIARGVIAAENISLFHSRFAFYDRQRIETETLSRFGKSESTQRAGKVLI 642 Query: 634 ATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHR----KYRPAG---FEIPVATIL 686 TQV+E S+D+D D +I+ P DLL QR GRL RH R + + +G + P +L Sbjct: 643 CTQVIESSVDIDMDAMISDLAPVDLLIQRAGRLQRHIRDRNGQLKNSGQDERDAPELLVL 702 Query: 687 LPDGEGYGRHE----------HIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYD 736 P+ + + + ++Y + +W TQ+ + E ++ P + R ++S+Y Sbjct: 703 APEWDEAPQEDWFSCAMRNSAYVYPDHGRLWLTQRVLRE--QGAIRMPQSARLLIESVYG 760 Query: 737 DAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDN---DETILAVTRDGEMS 793 ++ + + + C++ F + +L +A YS +++ ET+ TR E S Sbjct: 761 ESVVMPVGFAETEQKQEGKYYCDRAFATQMLLNFAAGYSSENSHYLSETL--STRLAEES 818 Query: 794 LPL 796 + L Sbjct: 819 VTL 821 >UniRef50_B5ZCG0 CRISPR-associated helicase Cas3 n=2 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=B5ZCG0_GLUDA Length = 897 Score = 278 bits (711), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 249/740 (33%), Positives = 350/740 (47%), Gaps = 86/740 (11%) Query: 10 YWGKSSKSLTKGNDI----HLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKA 65 +WGK+ +G I H LI H LDVAAVA ++ +N C + + Sbjct: 9 FWGKARAVPAEGAMIGPVMHPLIAHMLDVAAVA------VLLPENAKCGLD-------RR 55 Query: 66 WLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQD 125 L +ALHDIGK FQ K W + L G ++ F H AAGL Sbjct: 56 QLGLLVALHDIGKLMPAFQAKVEICWPEA-----ILGGFPVELVPCF-HDAAGL------ 103 Query: 126 SLSEQSLGDFFSFFDAAPHPYESW-----FPWVEAVTGHHGFILHSQDQDKSRWEMPASL 180 +L + + D + A + W + AV GHHG + +QD++ Sbjct: 104 ALLDLMVDDVLAALFANGQDGKCWRLTHKLKLLRAVAGHHGQPVSAQDRN---------- 153 Query: 181 ASYAAQDKQAREEWISVLEALFLTPAGLSI-NDIPPDCSSLLAGFCSLADWLGSWTTTNT 239 + A + +++L +F P L +D +LA ADW+GS Sbjct: 154 -TLAPDTIERARTLVALLFDVFRPPPILRPGDDTLRRLEWMLARVTIQADWIGSQQEWFP 212 Query: 240 FLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVL 299 ++ E + R Q A L +V + G L D+ +P +Q L Sbjct: 213 YVTPESVADPSGYFWNHALPRAQSAIHRAGLGPMVGAP--FAGTAGLFDHIREPSPMQAL 270 Query: 300 VDALPV--APGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRM 357 ++ LPV P L VIE TGSGKTE AL A +LI + + ALPT ATANAM R+ Sbjct: 271 LETLPVPSGPVLVVIEDATGSGKTEAALVMAQRLIAAGRSSGLFVALPTMATANAMYDRL 330 Query: 358 EASASHLF---SSPNLILAHGNSRFNHLFQSI-----KSRAITEQG--QEEAWVQCCQWL 407 A+ LF + P+L LAHG +R + F + S A + E A C WL Sbjct: 331 AAAYRRLFQPSARPSLALAHGRARLDERFAAALAPDDGSDAFPDARIMDETAEAYCAAWL 390 Query: 408 SQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEA 467 +++ + Q+GV TIDQ L++VLPV+ +R G+ +LIVDE HA+D YM + A Sbjct: 391 GSESRRALMAQVGVGTIDQALMAVLPVRFATVRHAGLAGKILIVDECHAFDPYMRREMVA 450 Query: 468 VLKAQADVGGSVILLSATLPMKQKQKLLDTY--GLHT-DPVE-NNSAYPLINWRGVNGAQ 523 +L+ A +GGS +LLSATL + +Q+L + + GL T DP + +AYPL+ G GA+ Sbjct: 451 LLRFHAAMGGSALLLSATLTQRIRQELTNAFRSGLDTVDPAPLSGTAYPLVTLVGKAGAE 510 Query: 524 RFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVC 583 + P L P + LAD D E +IAAA AGA V I N VD + Sbjct: 511 EY-----PCALRPGLARSIAVRRLADT--DAASRE-VIAAAAAGAAVAWIRNTVDEV-IA 561 Query: 584 YQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGR--ILVATQVVEQS 641 R L V++ +FHARF + DR E V++ FGKN K GR +LVA+QV+EQS Sbjct: 562 TARF--LRAQGVELLVFHARFAMVDRLAIERDVLARFGKN-KETTGRSAVLVASQVIEQS 618 Query: 642 LDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFE----IPVATILLPDGEGYGR-- 695 LD+DFD L+T P D + QR GRL RH R RP E I + PD R Sbjct: 619 LDLDFDVLVTDLAPMDQVIQRAGRLRRHDRIARPVDREELLVISPEPVAEPDPSWVRRVL 678 Query: 696 --HEHIYSNVRVMWRTQQHI 713 +Y + ++WRT + + Sbjct: 679 PGTAAVYRDPALLWRTARTL 698 >UniRef50_Q1R120 CRISPR-associated helicase Cas3, protein n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1R120_CHRSD Length = 897 Score = 274 bits (701), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 239/780 (30%), Positives = 360/780 (46%), Gaps = 102/780 (13%) Query: 9 HYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLL 68 H + + G+ HLL +H LDVAAV L + + ++ L+ Sbjct: 12 HRYAGKAMPGQSGDSCHLLAWHSLDVAAVGWHLLAPERPLTQQLALRLGIETEPLRRLLV 71 Query: 69 FFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFN-----------HGAA 117 F + LHD+GKF FQ L L L P + + Sbjct: 72 FLLGLHDLGKFSRAFQEVLK---LTLEGMAKPLGKPYLERHDRLGVLLWDAWWRQWRREG 128 Query: 118 GLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMP 177 L+W D + L + + A P+ GHHG + + R + Sbjct: 129 VLHWPPDDQTPARKLLEPMASLMA---PF----------FGHHGRPVVT-----GRLNVE 170 Query: 178 ASLASYAAQD--KQARE---EWISVLEALFLTPAGLSIN----DIPPDCSSLLAGFCSLA 228 A S A D AR+ +W V+E + P L ++ D+ S +AG+ +L+ Sbjct: 171 AFYGSDAQVDDVTAARDFIADWAKVVEPHW--PVELLLDEEWLDVFRTLSWTIAGWATLS 228 Query: 229 DWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRC--YEGVHAL 286 DWLGS F + E A S L Y+ A VL+ +G ++ YE + Sbjct: 229 DWLGS--HREYFPYCERAMS----LSEYWSRALGQAESVLQATGFAASPDPVPYESLAQW 282 Query: 287 LDNGYQPRQLQVLVDA--LPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFAL 344 P LQ +A L P L ++E TG+GKTE A A +L+ + + FAL Sbjct: 283 FSADITPTPLQQKAEAISLEAGPQLFILEDVTGAGKTEAACILAQRLLAAGHGEGLYFAL 342 Query: 345 PTQATANAMLTRMEASASHLFSS---PNLILAHGNSRFNHLFQSIKSRAITEQGQEE--- 398 PT AT+NAM R+ +S+ P+ +LAHG + N F+ ++ + G + Sbjct: 343 PTMATSNAMYARLGDLHYRFYSAESRPSFVLAHGARQLNEDFE--RAVMAAQPGDNDYAA 400 Query: 399 ----AWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEV 454 A QC +WL+ SNKK L +GV TIDQ L+ +LP +H+ +R LG+ R VLIVDEV Sbjct: 401 IDASASTQCSRWLADSNKKALLADVGVGTIDQALMGLLPFRHQSLRLLGLARKVLIVDEV 460 Query: 455 HAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTY--GL-HTDPVENNSAY 511 HA+D YM LL +L A GGS ILL+ATLP +Q L++ + GL + +++ Y Sbjct: 461 HAFDHYMQTLLHQLLAHHARQGGSAILLTATLPFAMRQALVNAWQQGLGYESAALSSTDY 520 Query: 512 PLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQV- 570 PL+ G GA R LA ++ R I LT E IA + G + Sbjct: 521 PLLTHSG-QGAHRETPLATRPEVMRRVEIGW-----------LTQEEDAIAEVSRGIEAG 568 Query: 571 -CLIC--NLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRN 627 C++ N VD A +Q ++++++ LFHARF + DRR E+ VI FGK + Sbjct: 569 DCIVWVRNTVDDAIRAWQAIRDIHSDPERCLLFHARFAMVDRRRIESDVIERFGKTSTPS 628 Query: 628 V--GRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATI 685 + G++L+ TQV ++SLD D D +I+ P DLL QR GRL RH R R + P + Sbjct: 629 IRRGQVLITTQVFQESLDCDADRMISDIAPIDLLIQRAGRLQRHQRGER----QPPRLLV 684 Query: 686 LLPDGE----------GYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIY 735 L P+ E + + +Y + ++W TQ+ + EL ++ PDA R+ ++ +Y Sbjct: 685 LAPEWEESPKADWLSRAHRGTQAVYQDTSLIWLTQRVLRELG--AIEMPDAARELIERVY 742 >UniRef50_A5FTJ4 CRISPR-associated helicase Cas3 n=2 Tax=Acidiphilium cryptum JF-5 RepID=A5FTJ4_ACICJ Length = 892 Score = 268 bits (685), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 270/962 (28%), Positives = 414/962 (43%), Gaps = 163/962 (16%) Query: 7 ICHYWGKSSKSLTKGNDI--HLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVK 64 + +WGKS T+ + + + ++ H LDVAA M K+ K Sbjct: 10 VLAFWGKS---YTREDKLFAYPIVAHSLDVAAAG--------------SHLPMPLKEFDK 52 Query: 65 AWLLFFIALHDIGKFDIRFQYKSAESWLK--LNPATPSLNGPSTQMCRKFNHGAAGLYWF 122 + F ++LHDIGKF FQ + ++ W L P + GP R AA L F Sbjct: 53 RTVYFLLSLHDIGKFSRPFQAQESDLWPSRVLGPWPGRVAGP-----RHDALTAALLEVF 107 Query: 123 NQDSLSEQ--SLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQ----------D 170 + L + LG S + HP + + + GHHG + D D Sbjct: 108 ADEGLLDPVFPLGRRGSGW----HPSKR-SGLIRTIAGHHGRPIDVPDHLEPAVCRQCLD 162 Query: 171 KSRWEMPASL--------ASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLA 222 +R + A L ++ AR +W +A Sbjct: 163 AAREFVQAMLDLFQPSPLPPPQSRRASARMQW-------------------------QIA 197 Query: 223 GFCSLADWLGSWTTTNTFLFNEDAP-SDINALRTYFQDRQQDASRVLELSGLVSNK-RCY 280 GF +LADW+GS N F D SD++ + + A++ +GL +K R + Sbjct: 198 GFLTLADWIGS----NEIWFPRDGTHSDLDPHDYFREVALPRAAQAGADAGLTPSKARTF 253 Query: 281 EGVHALLDNGYQPRQLQVLVDALPVAPG--LTVIEAPTGSGKTETALAYAWKLIDQQIAD 338 G AL P Q + +P+ G L +IE TGSGKTE AL A +++ A Sbjct: 254 TGFSALFPKVDTPSPAQSWAETVPLPEGAVLAIIEDLTGSGKTEAALTLASRIMASGEAK 313 Query: 339 SVIFALPTQATANAMLTRMEASASHLF---SSPNLILAHGNSRFNHLFQSI-----KSRA 390 + FALP+ ATAN+M R+ + LF S P++ L HG + + F+++ S + Sbjct: 314 GIFFALPSMATANSMFQRLTDTYLRLFEKGSRPSIALTHGKAGLDPRFRALISASPSSAS 373 Query: 391 ITEQGQE-EAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVL 449 +G+ + +C WL++ ++ +G+ TIDQ L++VLPV+H +R G+ VL Sbjct: 374 EPREGEAIPSEAECAAWLAEDRRRSLFADVGIGTIDQALLAVLPVRHAPLRLHGLQGKVL 433 Query: 450 IVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTY----GLHTDPV 505 +VDEVHA+D+YM+ L+A+L+ A +GGS ILLSATLP++ +Q L D + G Sbjct: 434 VVDEVHAFDSYMDRELQALLEFHAALGGSAILLSATLPLRMRQSLTDAFRRGAGQEAPRQ 493 Query: 506 ENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAAN 565 + YPL G + L + P + + + + L R++ AA Sbjct: 494 VTSMHYPLATMVGSEAHTEYSLGVR--------AGLPRSVTITRVGTEAEALSRVVDAAR 545 Query: 566 AGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKN-- 623 GA V I N VD A ++ N +D +FHARF DR+ E V+ FGK Sbjct: 546 LGAAVVWIRNSVDDALEAAAAVRMQN---IDPIVFHARFAHCDRQSIELEVLRRFGKESV 602 Query: 624 GKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVA 683 G+ G +L+ATQVVEQSLD+DFD L+T P D L QR GRL RH+R R G P Sbjct: 603 GQARAG-VLIATQVVEQSLDLDFDLLVTDLAPVDSLIQRAGRLWRHNRGTRVVGR--PEM 659 Query: 684 TILLP----DGEG------YGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDS 733 +L P D + R ++Y N ++WR + + + L P R +++ Sbjct: 660 VVLSPEPSMDADAGWLDPLLPRTNNVYRNPALLWRGARAL--FAKSDLVTPGDMRPLIEA 717 Query: 734 IYDDAEMDEPEWVGNGMDKFESAECEKR-FKARKVLQWAEEYSLQDN--DETILAVTRDG 790 D D P + D + R F A VL + E Y+LQ D TR Sbjct: 718 A--DNVADTPPGLKMAADGAWAKHLSHRAFAAGAVLDFDEGYTLQSGAWDRETRTPTRLE 775 Query: 791 EMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPF--------------- 835 E L + GK + + DL + + R + Sbjct: 776 EREQATLRLARVKDGKVVPYAGLAGDLRQAWTLSEVRVQRYRIAACPPPAGYSEAANEAR 835 Query: 836 ----TWKR-------SFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMTRVIP 884 W+R + EV ++G L L+G++ G+ + Y +G+ R++P Sbjct: 836 SQWGRWERESPHMLLAILEVTKQEGQLMLKGEKP------DGHPVSAIYDAVDGL-RLLP 888 Query: 885 AN 886 A+ Sbjct: 889 AS 890 >UniRef50_Q7N8H9 Similar to unknown protein YgcB of Escherichia coli n=1 Tax=Photorhabdus luminescens subsp. laumondii RepID=Q7N8H9_PHOLL Length = 905 Score = 266 bits (680), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 246/827 (29%), Positives = 378/827 (45%), Gaps = 112/827 (13%) Query: 10 YWGKSSKSL-TKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEM----LSKQRVK 64 YWGK+ + L D HLL YHCLDVAAV Q + L+ + R+ LS Q+++ Sbjct: 9 YWGKAKRVLEIDSADYHLLPYHCLDVAAVGM----QLLSLERSLTRDLASFLALSTQQLR 64 Query: 65 AWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATP----SLNGPSTQMCRKFNHGAAGLY 120 + + F +ALHDIGKF FQ KL P + P R F H GLY Sbjct: 65 SMVSFILALHDIGKFASAFQ--------KLLPGLAVGLHRPDCPKEYDGRYFCHDRIGLY 116 Query: 121 WFNQDSLSEQSLGDFFSFFDAAPHP-----YESWFPWVEAVTGHHGFILHSQD------- 168 ++ +++ + L + + A H +++ +++ V GHHG + Sbjct: 117 FW--ENIKAELLNRLVNI-EGAEHREQREMFDTLMVFIDCVLGHHGRPIDKTGYRAIKHF 173 Query: 169 QDKSRWEMPASLASYAAQ--------DKQAREEWISVLEALFLTPAGLSINDIPPDCSSL 220 + + A A + + +K +EW LE + AG++I Sbjct: 174 TEPHNFNAAALFAHHLVELFQPEFPIEKLQSKEWRRRLEQVSWQFAGIAI---------- 223 Query: 221 LAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCY 280 LADW+GS + T+ S L Y++ Q A + + L Sbjct: 224 ------LADWIGSDSHYFTY------QSKPMPLTDYWKHAQAMAKKAVMAINLGRPPVVK 271 Query: 281 EGVHALLDNGYQPRQLQVLVDALPV--APGLTVIEAPTGSGKTETALAYAWKLIDQQIAD 338 + G+ LQ +++PV +P L ++E TG+GKTE ALA +L+ + AD Sbjct: 272 PFISIQEYYGFAATPLQQWAESIPVDDSPQLFILEDVTGAGKTEAALALTHRLMQAKAAD 331 Query: 339 SVIFALPTQATANAMLTRMEASASHLF-----SSPNLILAHGNSRFNHLFQS---IKSRA 390 F LPT A++NA+ +R+ + S PN++LAHG N+ F Sbjct: 332 GFYFGLPTIASSNAIFSRIAQHYQQMLLTEDDSKPNIVLAHGTWGMNNQFHEPVLALGHP 391 Query: 391 ITEQGQEE--AWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSV 448 G+ + A QC QWL+ K+ L G+ IDQ L++VLP +++ +R G+ R V Sbjct: 392 DRNDGKTDIAASAQCNQWLADPRKQALLAPAGIGAIDQALLAVLPRRYQSLRLFGLNRKV 451 Query: 449 LIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTY----GLHTDP 504 LIVDEVHA D +M LLE +L GGS +LL+ATL KQ+Q+L D + GL + Sbjct: 452 LIVDEVHAADEFMFNLLENLLALHLYQGGSAVLLTATLTFKQRQRLTDIWLNVGGLSSQL 511 Query: 505 VENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDL-TMLERMIAA 563 ++ N +PL +N ++ P L R + E D L + + +E+++AA Sbjct: 512 LQKND-FPLATKISLNAI--LPVIEQP--LSSRKDVSRE--IKVDFLNSVGSCVEKVLAA 564 Query: 564 ANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKN 623 G V I N VD A YQ L+ L LFH++F L R+E E+ V++ F KN Sbjct: 565 IVQGQCVVWIRNTVDDAIEAYQTLRSLLTEPERCLLFHSQFILQHRKEIEDHVLTIFDKN 624 Query: 624 --GKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRK----YR--- 674 G+ G+ L+ TQ+ + SLD D D +I+ CP D L QR GRLHRH R YR Sbjct: 625 SHGELRRGKALITTQIFQASLDTDADVMISDLCPIDDLIQRAGRLHRHTRDSDGIYRWGI 684 Query: 675 PAGFEIPVATILLPD----------GEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFP 724 P+ I P+ + +++Y + +W T + + +L + P Sbjct: 685 KDSRPTPILFIHAPEWREQPGSDWLSHNFRNTQYVYRSPVRLWLTMRILRKLGAIRM--P 742 Query: 725 DAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKV-LQW 770 RQ +D++Y A PE + ++ E + KA+ LQW Sbjct: 743 AETRQLIDAVYGHAYEQAPEVLKYQENELIDEERSQAAKAKSYWLQW 789 >UniRef50_C1XFZ7 CRISPR-associated helicase Cas3 n=3 Tax=Meiothermus RepID=C1XFZ7_MEIRU Length = 899 Score = 265 bits (678), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 223/678 (32%), Positives = 320/678 (47%), Gaps = 59/678 (8%) Query: 11 WGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQ-NTFCRNEMLSKQRVKAWLLF 69 W KS + +G H LI H LDVAA A+ ++ + + L Q+ KAW+ Sbjct: 11 WAKSDRGREQGA-WHPLIAHLLDVAACAEAILEREPPKTLELYAHDLSLEPQQAKAWVCA 69 Query: 70 FIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSE 129 LHDIGK FQ K E +L + + T +H +SE Sbjct: 70 LAGLHDIGKASPAFQQKWPEGKERLWATGLTWSSDPTPPPHDLSHSI----------ISE 119 Query: 130 QSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQ 189 L + +A Y + AV HHGF D DK+ + A D+ Sbjct: 120 VVLPELL---EARGWKYRAAQNVAAAVGEHHGFRATRGDLDKATTREKGN----ANWDEV 172 Query: 190 AREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSD 249 RE + +VLE L + A + LAG S ADW+GS + + +D Sbjct: 173 RRELFEAVLEVLGVGEAP-KVKLYGGAAFERLAGLTSFADWIGS--SLDFHPLGDD---- 225 Query: 250 INALRTYFQDRQQDASRVLELSG------LVSNKRCYEGVHALLDNGYQP---RQLQVLV 300 L Y+++ + A++ L+ G L+ + E V A L + P R LQ + Sbjct: 226 ---LAGYYREAKARAAQKLDGIGWFQRKTLMPEPQSLEEVFAYLGSPEAPFRARPLQAAI 282 Query: 301 DALPVA---PGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRM 357 + L P L ++EAP G GKTE A +L + ALPTQAT N M R Sbjct: 283 ERLLEGVDCPALLLVEAPMGEGKTEAAFYAHLRLQAANGHRGMYVALPTQATGNLMFERA 342 Query: 358 EASASHLFSSP--NLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVF 415 +A S +L L HG S +Q I+ R + + +EE V+ W S K+ Sbjct: 343 KAFLDRWGQSRKLDLQLLHGASELVEAYQEIRVRPNSPEEREEG-VEAQVWFSH-RKRGL 400 Query: 416 LGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADV 475 L + V T+DQ L+ +LP KH+F+R G+G V+++DEVHAYDTY +GL+E +++ + Sbjct: 401 LSEYAVGTVDQALLGILPTKHQFVRLWGLGNRVVVLDEVHAYDTYTSGLIEMLVRWLRAL 460 Query: 476 GGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLP 535 SV+L+SATLP +++ LL +G + + + YP I R V +P + Sbjct: 461 DSSVVLMSATLPRAKRENLLRAFG--AEKITEDKPYPRIT-RVVKD--------NPMPVV 509 Query: 536 PRFSIQPEPICLADMLP-DLTML-ERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNT 593 F + LP DL + E+ + A G V I N V AQ Y+ L N+ Sbjct: 510 ETFEACKQLTLQLRALPLDLEAIAEQALEQARRGGCVACIVNTVQRAQELYRALAG-NSD 568 Query: 594 QVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQH 653 V++ LFHAR+ L +R +E V++ FGK G+R ILVATQVVEQSLD+DFD + T Sbjct: 569 GVEVYLFHARYPLEERLNREQLVLAKFGKQGQRPKRAILVATQVVEQSLDLDFDVMFTDL 628 Query: 654 CPADLLFQRLGRLHRHHR 671 P DL+ QR GRLHRH R Sbjct: 629 APVDLVLQRAGRLHRHAR 646 >UniRef50_D1CAJ4 CRISPR-associated helicase Cas3 n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1CAJ4_SPHTD Length = 936 Score = 265 bits (677), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 235/784 (29%), Positives = 348/784 (44%), Gaps = 90/784 (11%) Query: 11 WGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQ--SVVLQNTFCRNEMLSKQRVKAWLL 68 W K S+ + H L+ H LDVA VA WD S ++ LS+ W+ Sbjct: 10 WAKRSR-VPGDPAYHPLLCHLLDVALVARVMWDDVLSPAVRRYLAAAFGLSETDAGPWIA 68 Query: 69 FFIALHDIGKFDIRFQ--YKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDS 126 F LHD+GK FQ + +A S L+ + P P R HG+ + Sbjct: 69 FLTGLHDLGKASPAFQLTWTAAHSLLR-DAGFPLPQRPLDP--RATPHGSVTAATLPEIL 125 Query: 127 LSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQ 186 ++E L + + + GHHG + D +MP ++A Sbjct: 126 VAEFQLDNQLARRLGT------------VIGGHHGIFPRAHDL----CDMP-TVAVGRGP 168 Query: 187 DKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDA 246 AR + L + P I + LAG S+ADW+GS F + A Sbjct: 169 WNTARAALVRELASHIGVPRDAVPRGIDNPAAMTLAGLVSVADWIGSDDLIFPFAAADAA 228 Query: 247 PSDINALRTYFQDRQQDASRVL-ELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALP- 304 + R Y++ + A++ + L+ L S + L P LQ V L Sbjct: 229 AASSLDFRNYYRQAEGQAAQAMARLAWLKSRAGAEPRAFSDLFPHITPNALQEAVIELAR 288 Query: 305 --VAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASAS 362 P L ++EAP G GKTE AL A + A+PTQAT+N M R+ Sbjct: 289 DLPHPSLVIVEAPMGEGKTEAALFLADHMNAVGGNRGTYVAMPTQATSNQMFGRVRDYLI 348 Query: 363 HLFSSP--NLILAHGNSRFNHLFQSIKSR--AITEQGQEEA--------WVQCCQWLSQS 410 F + NL L HG++ N F +++ R A+ +++A V +W + Sbjct: 349 PRFDTETVNLQLLHGHAALNAEFAALRQRTDALLSPREDDADQDPEIASGVVAAEWFTY- 407 Query: 411 NKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLK 470 K+ L GV TIDQ L++VL +H F+R G+ +++DEVHAYDTYM+ LLE +L+ Sbjct: 408 RKRGLLSPFGVGTIDQALLAVLQTRHVFVRLFGLAGKTVVIDEVHAYDTYMSTLLERLLE 467 Query: 471 AQADVGGSVILLSATLPMKQKQKLLDTY--GLHTDPVE----NNSAYPLINWRGVNGAQR 524 A +G VILLSATLP ++ L Y GL T +E ++ YP + W NG Sbjct: 468 WLAALGSPVILLSATLPDARRATLARAYAAGLDTPSLEPRTDPSAVYPRVTWVTRNGINS 527 Query: 525 FDLLAHPEQ--------LPPRFSIQP-EPICLADMLPDLTMLERMIAAANAGAQVCLICN 575 + A + R P EP L L AA G ++CN Sbjct: 528 RHVPASARTTRSVGIGWVDGRLPETPEEPFPLGKQLE---------AALEPGGCAVVVCN 578 Query: 576 LVDVAQVCYQRLKEL-----NNTQVDIDLFHARFTLNDRREKENRVISNFGKNG------ 624 V AQ YQ LK ++ + ++DL HARF +++R+ +E R + FGK G Sbjct: 579 TVGRAQAVYQALKRYFQGVADDGEPELDLLHARFLVDERQHREQRALRRFGKPGGVVTTE 638 Query: 625 ------KRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGF 678 +R +L+ATQ+VEQSLD+DFD ++T PADL+ QR GRLHRH R RP G Sbjct: 639 EGTIQVRRPKRAVLIATQIVEQSLDLDFDLMVTDLAPADLVLQRAGRLHRHRRDARPRGL 698 Query: 679 EIPVATILLPD--GEGYGRHEHIYSNV---RVMWRTQQHIEELNGASLFFPDAYRQWLDS 733 E+P I P+ EG +H + V + R+ + + + ++ PD +++ Sbjct: 699 EVPRLWICRPEHITEGVPVFDHGTTAVYDAHALLRSWLVLRDRD--AIAIPDEIPDLIEA 756 Query: 734 IYDD 737 +YDD Sbjct: 757 VYDD 760 >UniRef50_Q2JWC1 CRISPR-associated helicase Cas3 n=2 Tax=Chroococcales RepID=Q2JWC1_SYNJA Length = 893 Score = 262 bits (669), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 254/851 (29%), Positives = 375/851 (44%), Gaps = 107/851 (12%) Query: 9 HYWGKSSKSLTKGND---IHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEM-----LSK 60 +W K+ + + + H ++ H D AAVA + + R ++ L Sbjct: 5 RFWAKTGQGQLREDGRPLYHPVLCHLADTAAVA---MEIVQTYLSPLARQQLSVGLGLEG 61 Query: 61 QRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKF-NHGAAGL 119 + + F HD+GK FQ++ +E L L G + R + N G A Sbjct: 62 DPLARFCGFMAGCHDLGKVSPAFQFQVSEVGKAL--VGSRLYG----LWRSYPNTGQAAP 115 Query: 120 YWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPAS 179 + +++ +L F P + V GHHGF QD Sbjct: 116 H----GTVTAATLPGFLEELGL---PKKLAQKLSAIVGGHHGFFPGLQD----------- 157 Query: 180 LASYAAQDKQAREEWISVLEALFLTP---AGLSINDIPPDCSS----LLAGFCSLADWLG 232 + D R EWI +F GL IP CS+ +LAG ++ADW+ Sbjct: 158 -IQSLSPDDVGRGEWIPFRREIFQQLQDFVGLKREGIPGRCSNSAAMILAGLATVADWIA 216 Query: 233 SWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYE-GVHALLDNGY 291 S T +F + D P TY Q + A + L+ G ++ AL D Sbjct: 217 S--NTESFPYANDEP-----FETYAQGIAEKAQQALKAQGWIAPPTDSPLTFQALFDFIS 269 Query: 292 QPRQLQV----LVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQ 347 +PR LQ+ L D L P L ++EA G GKTE AL A L Q A LPTQ Sbjct: 270 EPRPLQLAAINLKDRL-APPCLVIVEAAMGEGKTEAALYLADHLQHQAGAGGFYIGLPTQ 328 Query: 348 ATANAMLTRMEASASHLFSSP--NLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQ 405 AT+NAM R+++ + NL L+HG + + R QE V + Sbjct: 329 ATSNAMFERVKSFLQKRYPDAIVNLTLSHGAAALKEDYLDTVCRLDQVYDQEGKGVFASE 388 Query: 406 WLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLL 465 W + + K+ L GV T DQ L+ + +H+F+R G+ ++I+DE+HAYD Y + LL Sbjct: 389 WHT-ARKRTLLSPYGVGTPDQALMGAVRARHQFVRLFGLAGRIIILDEIHAYDLYTSTLL 447 Query: 466 EAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGL---HTDPVENNSAYPLIN--WRGVN 520 E L+ A +G VI LSATLP +Q+LL Y P N+ YP I G Sbjct: 448 ERFLEWAAVLGSPVIALSATLPAGTRQRLLAAYARGCGQPPPDSPNAPYPRITALASGAA 507 Query: 521 GAQRFDLLAH-PEQLPPRFSIQPE-PICLADMLPDLTMLERMIAAANAGAQVCLICNLVD 578 AQ F H QL R+ + P L+ +L + G V +IC+ VD Sbjct: 508 LAQSFAPSEHVRRQLGIRWVRDDQWPAELSQVL------------SKGGGCVAVICSTVD 555 Query: 579 VAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGR-ILVATQV 637 AQ +Q L++ + ++ LFH RF DR + E + + FGKNG R +LVATQV Sbjct: 556 RAQWVFQHLQKYFPPE-ELGLFHGRFLFKDREQIEKQCLERFGKNGHLRPSRFVLVATQV 614 Query: 638 VEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLP----DGEGY 693 +EQSLDVDFD +I+ P DLL QR GRLHRH R RP P I+ P +G+ Sbjct: 615 IEQSLDVDFDLMISDPAPIDLLLQRSGRLHRHPRDKRPPELSAPYLWIVEPELAEEGKAN 674 Query: 694 GRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGN----- 748 R + ++ R+ + E L P+ ++S+Y D EM PE + Sbjct: 675 FRESSSIYDRHILLRSWLALRERCNVQL--PEEIDDLIESVY-DLEMPIPEALETVHAQD 731 Query: 749 ---GMDKFESAECE-KRFKARKVL-------QWAEEYSL---QDNDETILAVTRDGEMSL 794 ++K++ E + KR +A +V E+++ +D++ TI AVTR G+ S+ Sbjct: 732 WRESLEKYKVEEEDAKRSRANEVKIPPPNADVRPEQFTYLKKEDDESTIAAVTRLGQPSV 791 Query: 795 PLLPYVQTSSG 805 + Q +G Sbjct: 792 ATIFLQQGKTG 802 >UniRef50_B1LQ84 CRISPR-associated helicase Cas3 n=55 Tax=Enterobacteriaceae RepID=B1LQ84_ECOSM Length = 899 Score = 258 bits (660), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 235/816 (28%), Positives = 372/816 (45%), Gaps = 83/816 (10%) Query: 10 YWGKSSKSLTKG-NDIHLLIYHCLDVAAV------ADCWWDQSVVLQNTFCRNEMLSKQR 62 +WGK+ + G +D HLL +H LDVAA+ ++C+ Q F E ++ Sbjct: 20 FWGKTRRGEKDGGDDYHLLCWHSLDVAAMGYLMVKSNCFGLADYFRQLGFADTEQAAQ-- 77 Query: 63 VKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWF 122 AWLL + HDIGKF FQ L L+P G + + K +H G YW Sbjct: 78 FFAWLLCW---HDIGKFARSFQQ------LYLHPQLKVPEG-ARKNYEKISHSTLG-YWL 126 Query: 123 NQDSLSEQSLGDFFSFFDAAPHPYESWFP-WVEAVTGHHGFILHSQDQDKSRWEMPASLA 181 LSE + +P + W+ TGHHG D+ L Sbjct: 127 WNHYLSE--CQELLPSSSLSPRKLKRVMEMWMPMTTGHHGRPPERMDE----------LD 174 Query: 182 SYAAQDKQAREEWISVLEALF--LTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNT 239 ++ +DK A +++ ++ LF + +D + L+ + S L WT ++T Sbjct: 175 NFLPEDKGAARDFLLAIKVLFPLIEIPTFWDDDEGVELIKQLSWYISATVVLADWTGSST 234 Query: 240 FLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVL 299 F A + + Y+Q A L + + + G++ L P LQ Sbjct: 235 RYFPRVAQT--MDIEDYWQKTLVQAQNALTVFPPKAESAPFTGINTLFPFIENPTPLQQK 292 Query: 300 VDALPVA---PGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTR 356 V L ++ P L ++E TG+GKTE AL A +L+ A + F LPT ATANAM R Sbjct: 293 VLDLDISQPGPQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLFFGLPTMATANAMYDR 352 Query: 357 MEASASHLFS---SPNLILAHGN----SRFNHLFQSIKSRAITEQGQEEAWVQ-CCQWLS 408 + + +S P+L+LAH RFN S +E+ E+ + Q C W + Sbjct: 353 LVKTWLAFYSPESRPSLVLAHSARTLMDRFNESLWS-GDLVGSEEPDEQTFSQGCAAWFA 411 Query: 409 QSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAV 468 SNKK L +IGV T+DQ +++V+P KH +R LG+ +L+ DE+HA D YM+ +LE + Sbjct: 412 DSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGL 471 Query: 469 LKAQADVGGSVILLSATLPMKQKQKLLDTY-----GLHTDPVENNSAYPLINWRGVNGAQ 523 ++ QA G SVILLSATL +Q+ KL+ + G P YP W + Sbjct: 472 IERQARGGNSVILLSATLSQQQRDKLVAAFARGIEGQQEAPFLEKDDYP---W--LTHVT 526 Query: 524 RFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVA-QV 582 + D+ H ++ R ++ + + + + + R+ +A + G + I N VD A QV Sbjct: 527 KSDV--HSHRVATRKDVE-RSVSVGWLHSEQECIARIASAVSQGKCIAWIRNSVDDAIQV 583 Query: 583 CYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGK-NGKRNVGRILVATQVVEQS 641 Q L + LFH+RF +DR+ E ++ FGK + + G++L+ TQV+EQS Sbjct: 584 HRQLLARGVIPASSLSLFHSRFAFSDRQRIETETLARFGKEDCSQRAGKVLICTQVLEQS 643 Query: 642 LDVDFDWLITQHCPADLLFQRLGRLHRHHR------KYRPAGFEIPVATILL-------P 688 +D D D +I+ P DLL QR GRL RH R K P ++L P Sbjct: 644 VDCDLDEMISDLAPVDLLIQRAGRLQRHIRDMNGQLKRDGKDERHPPELLILAPVWDDSP 703 Query: 689 DGEGYG----RHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPE 744 E +G +Y + +W TQ+ + E + P + R ++S+Y + + Sbjct: 704 GDEWFGSAMRNSAFVYPDHGRIWLTQRVLREQGAIQM--PHSARLLIESVYGEDVVMPEG 761 Query: 745 WVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDND 780 + + ++ C++ + VL + Y+ ND Sbjct: 762 FARSEQEQVGKYYCDRAMAKKFVLNFRPGYAANIND 797 >UniRef50_Q0BSC3 Superfamily II DNA and RNA helicase n=2 Tax=Alphaproteobacteria RepID=Q0BSC3_GRABC Length = 832 Score = 256 bits (654), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 253/879 (28%), Positives = 384/879 (43%), Gaps = 114/879 (12%) Query: 12 GKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFI 71 GKSS +T H +H LDVAAVA+ + V + ++ L+ Sbjct: 8 GKSS--VTPDGPEHPAAFHMLDVAAVAERLIEPFGVARP------------LRDALVVMT 53 Query: 72 ALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNH-GAAGLYWFNQDSLSEQ 130 ALHDIGK F+ + L+ A P F H + + ++ +D+ Sbjct: 54 ALHDIGKISESFR-----AMLREGVAQPG-----------FRHWELSEVLFYVEDARIAA 97 Query: 131 SLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFIL-HSQDQDKSRWEMPASLASYAAQDKQ 189 LG P + + A+ GHHG H +P L + Sbjct: 98 RLG-------GTPLVRKMLY---AAIAGHHGRPSEHMLGALPPEARLPRELVRALKCVGE 147 Query: 190 AREEWISVLEALF-LTPA----GLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNE 244 RE +++ F L P GL++ + S LAGFC+ ADW+GS N F Sbjct: 148 GREPAARLMDVFFDLWPEASLEGLTLAEAT-TLSWWLAGFCAAADWVGS----NLGWFPP 202 Query: 245 DAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALP 304 +D +L Y Q + A+R + +G ++ +G L D +P Q+ ALP Sbjct: 203 KTEAD--SLAAYLQQTRAIAARAVVEAG-IAGTMVRQG--KLFDFVLRPMQVACSTIALP 257 Query: 305 VAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHL 364 P L ++E TG+GKTE AL + + ALPT AT +AM R + Sbjct: 258 DGPTLAIVEDGTGTGKTEAALILVHRFCQAGKGRGLFDALPTMATTDAMFDRASRIVGRM 317 Query: 365 FSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTI 424 F +P++ LAHG + + F+ + R+ T E + WL++ N++ L +G+ TI Sbjct: 318 FDNPSVTLAHGRAGLSVPFRELVQRSRTGGPGE---ITSSDWLAEGNRRALLADVGIGTI 374 Query: 425 DQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAY-DTYMNGLLEAVLKAQADVGGSVILLS 483 DQ L+SVLPV+ + +R G+ +L+VDEVH + Y+ L A+LK GGS ILL+ Sbjct: 375 DQALLSVLPVRFQTLRIYGLSSKILLVDEVHEMGEAYIAEELTALLKMHRAAGGSAILLT 434 Query: 484 ATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPE 543 ATLPM + KLL TY D +N AYP + G +F E P + ++ E Sbjct: 435 ATLPMSLRSKLLATY----DGASDNPAYPALTIAGGEAITQFP----AEDYPVKGPVKVE 486 Query: 544 PICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHAR 603 + D D L + A GA + N VD A + ++ L V+ L HAR Sbjct: 487 RL---DTAADAVTL--LTGMAAQGAACVWVRNAVDDA---IEAVEALRAAGVEARLIHAR 538 Query: 604 FTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRL 663 F L DR+ E +++ GKNGK G +LV TQV+E SLD+DFD +++ P L QR Sbjct: 539 FALCDRKRIEAEILATVGKNGKGRAGFVLVGTQVLESSLDLDFDVMVSDIAPIAALIQRA 598 Query: 664 GRLHRHHRKYRPAGFEI---PVATILLPDGE----------GYGRHEHIYSNVRVMWRTQ 710 GRL RH RP PV +L PD G+ +Y+ V WR+ Sbjct: 599 GRLWRHM-DIRPVSVRPVAGPVLYVLSPDPSLVEDERWLHGTLGKGAWVYALADV-WRSA 656 Query: 711 QHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNG-MDKFESAECEKRFKARKVLQ 769 + + + PD R ++++Y PE + DK+ ++ +++ Sbjct: 657 RVL--FTQGQIGTPDRQRALIEAVYGTDTEPVPEALLKAEQDKYGKDSADRGLAWHNIVK 714 Query: 770 WAEEY-SLQDNDETILAVTRDGEMSLPLLPYVQTSSG------KQLLDGQVYEDLS-HEQ 821 + + Y D+ + TR GE L +T +G + D D+S H + Sbjct: 715 FTDGYRKAGRGDDDVNYPTRLGEEVRVLRLARRTRTGLVPWAEGEGEDAWALSDVSAHRK 774 Query: 822 QYEALALNRVNVPFT---------WKRSFSEV--VDEDG 849 + +AL L + P WKR+ + VDEDG Sbjct: 775 KLDALPLPDQSSPEIMKITKDWPEWKRAQIRLCPVDEDG 813 >UniRef50_D1CGD0 CRISPR-associated helicase Cas3 n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CGD0_THET1 Length = 944 Score = 254 bits (648), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 236/804 (29%), Positives = 354/804 (44%), Gaps = 100/804 (12%) Query: 25 HLLIYHCLDVAAVADCWWDQ--SVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIR 82 H L+ H LDVAAV W + + + ++ + WL FF HDIGK Sbjct: 47 HPLLCHMLDVAAVTLQMWRRVLPAAWKARISGVLGVGQEDAERWLAFFAGGHDIGKASPA 106 Query: 83 FQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDS--------LSEQSLGD 134 FQ L+L P + R+ AGL FN + + E L D Sbjct: 107 FQ-------LQLRP-----EQGRELVARRLRD--AGLPLFNARAPHGTISANVLETVLAD 152 Query: 135 FFSFFDAAPHPYESWFPWVE-AVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREE 193 F + WV AV GHHGF+ D+ R ++ + D ARE Sbjct: 153 VFGLSGRSAR-------WVAFAVGGHHGFV---PSYDEVRRDLDQQAVGWGMWDA-AREV 201 Query: 194 WISVL-EALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINA 252 + L +AL L + + PD + +LAG S+ADW+GS F + + + Sbjct: 202 LLCRLADALGLPGSSRPTVESTPD-AFMLAGLVSVADWIGS--NEEYFPYAAQSALQVPQ 258 Query: 253 L--RTYFQDRQQDASRVLELSGLVSNKRCYEGVH--ALLDNGYQPRQLQVLVDALP---V 305 L Y + + A R + G V + + L QP +Q + L Sbjct: 259 LDAEAYLERAMRQAERAMASLGWVGWRPASGSMRLTELFPYIRQPTTVQAAAEELAGEVK 318 Query: 306 APGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLF 365 +P +T+IEAP G GKTE A+ A FALPT AT+N M R+ H + Sbjct: 319 SPSITIIEAPMGEGKTEAAMLLADTFSTAHGMSGCYFALPTMATSNQMFGRVTDYLRHRY 378 Query: 366 SSPNLI--LAHGNSRFNHLFQSIKSRA---ITEQG--------QEEAWVQCCQWLSQSNK 412 ++ L HG+S + L Q ++ + QG ++ V QW ++ K Sbjct: 379 PEDVVVVNLVHGHSDLSALLQELRQKGEEIFQLQGVYDEALGDEQLGAVVAGQWFTR-GK 437 Query: 413 KVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQ 472 + L GV T+DQ L++VL VKH F+R + +IVDEVHAYD YM LL +L+ Sbjct: 438 RALLPPYGVGTVDQALLAVLQVKHVFVRLFALSTKTVIVDEVHAYDVYMTTLLHRLLEWL 497 Query: 473 ADVGGSVILLSATLPMKQKQKLLDTY----GLHTDPVENNSAYPLINWRG---VNGAQRF 525 + V++LSATLP ++++L+ Y G + + YP I + V G Sbjct: 498 GALSVPVVVLSATLPSARRRELVKAYARGAGWQAERDLPPAGYPRITYAAAEDVRGIHFA 557 Query: 526 DLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQ 585 A ++ R+ PE L +L + A + G +ICN V AQ Y Sbjct: 558 PSEASRRKVALRWVSAPEHEALGQLLAE---------ALSQGGCAAIICNTVPRAQALYS 608 Query: 586 RLKEL-----NNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQ 640 L+E+ + ++DL HAR+ +R +E R + F +NG+R ILVATQV+EQ Sbjct: 609 ALREVFPGLAEDGMPELDLLHARYPYEEREVREARTLGRFSRNGRRPHRAILVATQVIEQ 668 Query: 641 SLDVDFDWLITQHCPADLLFQRLGRLHRH--HRKYRPAGFEIPVATILLPDGEG----YG 694 SLD+DFD ++T P DL+ QR+GRLHRH H RP P ++ P G + Sbjct: 669 SLDLDFDLMVTDLAPVDLVLQRMGRLHRHPVHDPLRPERLRSPELWVVSPQVMGDVPIFD 728 Query: 695 RHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFE 754 R + + R+ + + + +L P+ + ++ +Y D V G + Sbjct: 729 RGSASVYDEHTLLRSWLALRDRD--TLQLPEDIEELVEQVYSDGR------VPQGASEEL 780 Query: 755 SAECEKRFKA-RKVLQWAEEYSLQ 777 + E+ FKA +KVL+ E SLQ Sbjct: 781 RSLWERTFKAQQKVLR---EDSLQ 801 >UniRef50_B8IMR6 CRISPR-associated helicase Cas3 n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IMR6_METNO Length = 897 Score = 251 bits (640), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 225/718 (31%), Positives = 329/718 (45%), Gaps = 92/718 (12%) Query: 221 LAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCY 280 LAG +LADW+GS + F AP LRTY++ A + GLV Sbjct: 210 LAGLTALADWIGS----DQSHFPYTAPD--TDLRTYWEAAIAQAEGAVAAFGLVPAAPGP 263 Query: 281 E-GVHALLDNGYQPRQLQVLVD--ALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIA 337 AL P Q ALP P L ++E TG GKTE AL A +L+ A Sbjct: 264 RLSFSALTGVTCPPSAAQSWATEVALPDGPLLIIVEDVTGGGKTEAALMLAHRLLADGRA 323 Query: 338 DSVIFALPTQATANAMLTRMEASASHLF---SSPNLILAHGNSRFNHLFQSIKSRAIT-- 392 + ALPT ATANAM +R+ A LF + P+L LAHG + + F+S+ A Sbjct: 324 RGLFLALPTMATANAMFSRVREIAPRLFGEGAKPSLTLAHGAATLHPAFRSVPVPAAPGA 383 Query: 393 -----EQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRS 447 +G++++ WL +++ L +GV TIDQVL+SVLP +++ +R G+ Sbjct: 384 APAGEREGEQDSAAVAAGWLMGESRRALLADLGVGTIDQVLLSVLPARYQAVRLAGLADK 443 Query: 448 VLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTY----GLHTD 503 VL+VDE H+YD Y+ LE ++ A GGS I+LSATLP K +L+ + G Sbjct: 444 VLLVDEAHSYDAYVGTELERLVAFHAAGGGSTIILSATLPRTVKDRLVAAWRGAVGDGGA 503 Query: 504 PVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQ--PEPICLADMLPDLTMLERMI 561 P++ + YP+ G+ L +L ++ P P + LER+ Sbjct: 504 PLK-QAHYPVATLVARAGSPVEKRLHARPELRRNLTVTRVPNPS---------SALERIR 553 Query: 562 AAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFG 621 AA AGA V + N VD A + L + DLFHARF ++DR E RV++ FG Sbjct: 554 AAVAAGACVAYVRNTVDDA---IETAAVLRQAGIPADLFHARFAMHDRLAIEERVLATFG 610 Query: 622 KNGK--RNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFE 679 K+ + GR+LVATQV+EQSLD+DFD +++ P D L QR GRL RH RP Sbjct: 611 KSSQPEDRRGRVLVATQVLEQSLDLDFDLIVSDLAPIDALLQRAGRLWRH--AGRPRSVS 668 Query: 680 IPVATILLPD----------GEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQ 729 P I+ PD G R +Y++ ++WRT + + A+ P R Sbjct: 669 GPELVIVSPDPAGSVSADWVGAALRRTAFVYTDPAILWRTARTL--FASATFNVPRDVRS 726 Query: 730 WLDSIYDDAEMDEPEWVGNGMD-KFESAECEKRFKARKVLQ-----------WAEEYS-- 775 ++++Y + + D PE + D + A E+ F + +L W +E Sbjct: 727 AIEAVYAENKGDVPEVLLAASDEQHGRAGAERAFADQNLLDHRDGYRADGKAWQQERQVV 786 Query: 776 --LQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNV 833 L + + RDGE L+P+ Q D LS + YE + R Sbjct: 787 TRLAEAARVLRLARRDGER---LVPWAQDP------DPSTAWSLSEVKAYERVLRGRHQA 837 Query: 834 PFTWKRSFSEVV-------DEDGLLWLEGKQNLDGWVW-----QGNSIVITYTGDEGM 879 W RS + V DED +L +Q + W +G ++ TY+ EG+ Sbjct: 838 EVRW-RSLVDAVRVGWSRFDEDVILLPLERQQGEAWAGVLVDDEGQAVNFTYSVAEGL 894 >UniRef50_A5UR18 CRISPR-associated helicase, Cas3 family n=1 Tax=Roseiflexus sp. RS-1 RepID=A5UR18_ROSS1 Length = 927 Score = 247 bits (631), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 241/806 (29%), Positives = 351/806 (43%), Gaps = 111/806 (13%) Query: 7 ICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSV--VLQNTFCRNEMLSKQRVK 64 + +WGK+ + T H I+H LDVA VA+ V Q + + Sbjct: 8 LLQFWGKTPRPGTPVTQFHPAIFHMLDVACVAEALLRHGPQRVRQALLHAWRGADPEALI 67 Query: 65 AWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQ 124 +WL F IALHD+GK FQ + +L A S ++ +H A W + Sbjct: 68 SWLPFLIALHDLGKLSAAFQGQDEAQRERLTRAGVQFRSHSPEL----HHAAISALWIH- 122 Query: 125 DSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHG-FI----------LHSQDQDKSR 173 D+ + + W + +A GHHG F+ LH ++ +SR Sbjct: 123 ---------DYLAQNEPEIAQDLVWI-FRDATGGHHGRFVDESMEDLRKKLHYVERGESR 172 Query: 174 WEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDI-----PPDCSSLLAGFCSLA 228 W + R++ +L L L P ++ I P + L G + Sbjct: 173 W-------------RDWRKQGYVLLRDL-LAPEDKPLHRIGTPVAPRPATVALTGLLVWS 218 Query: 229 DWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLD 288 DW+GS N F DI+ + + R Q+A L S + Y AL Sbjct: 219 DWIGS----NEHDFPATPGMDIHCYLSLSRQRAQNALTTHYLRASRSQPQ-YSDFRALF- 272 Query: 289 NGYQPRQLQVLVDALP----VAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFAL 344 PR LQ +VD L P L VIEAPTG GKTE ALA A ++ + D + FAL Sbjct: 273 QAIAPRPLQAVVDRLSDNDLRQPALVVIEAPTGEGKTEAALALARRIAALRGIDEIFFAL 332 Query: 345 PTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNH-----LFQSIKSRAITEQGQEEA 399 PT AT N M TR+E L+ G+ R +H + ++ R Q+ + Sbjct: 333 PTMATGNQMFTRLERFFRTLYGD------GGSVRLSHSQAIVVEDDLRRRVTLSADQDRS 386 Query: 400 WVQCCQ------WLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDE 453 + C W KK L GV T+DQV + L V+H +R G+ V+++DE Sbjct: 387 DPEGCSADVMLGWFV-GPKKAMLAPFGVGTVDQVELGGLNVRHYPLRLFGLASKVVMIDE 445 Query: 454 VHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNS---- 509 VHAYD YM+ +LE L A +G S+ILLSATLP ++ L + T+P S Sbjct: 446 VHAYDAYMSVILEHTLAWLATLGCSIILLSATLPRQRHDALARAFLRATEPAAALSLPEK 505 Query: 510 -AYPLINWRGVNGAQRF--DLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANA 566 YP ++ D+ ++ RF Q P A R++ Sbjct: 506 LPYPALSLYHATAQSHHTCDVFRGEQRFILRFRKQSAPEEEAG---------RLLELIRN 556 Query: 567 GAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKR 626 G V ICN VD AQ Y+ L V L HARF L++R+ +E + + GK+ +R Sbjct: 557 GGAVARICNRVDDAQAIYRALIASGARDVTCVLLHARFPLHERQRREQCISNLVGKDSQR 616 Query: 627 NV-GRILVA-TQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVAT 684 RI++A TQV+EQSLD D D +++ P DLL QR GRLHRH+R RP PV Sbjct: 617 TPEQRIIIAGTQVLEQSLDYDVDVMVSDFAPIDLLLQRAGRLHRHNR-CRPDDHREPVLE 675 Query: 685 ILLP-DGEG---YGRHEHIYSNVRVMWRTQQHIEELNGAS-----LFFPDAYRQWLDSIY 735 I++P D +G + R IY ++WR+ + +G + + P YR ++++Y Sbjct: 676 IVIPYDEQGEPDWRRWRAIYEPY-ILWRSLATL--CDGLTDDTRIVTLPRDYRTLIEAVY 732 Query: 736 DDAEMDEPEWVGNGMDKFESAECEKR 761 A + VG + AE E R Sbjct: 733 SAAPV-----VGRYAGEVAKAEQEYR 753 >UniRef50_Q1J371 CRISPR-associated helicase Cas3, core n=1 Tax=Deinococcus geothermalis DSM 11300 RepID=Q1J371_DEIGD Length = 971 Score = 247 bits (630), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 228/719 (31%), Positives = 323/719 (44%), Gaps = 111/719 (15%) Query: 11 WGKSSKSLTKGNDIHLL--IYHCLDVAA-VADCWWDQSVVLQNTFCRNEMLSKQRVKAWL 67 W KS+K G L + H LDVAA A+ + + F + L ++ AW Sbjct: 26 WAKSAKKNADGTQGAWLPVLNHLLDVAACAAEILALEPPQTRMLFEADLGLEGEQALAWT 85 Query: 68 LFFIALHDIGKFDIRFQYKSAESWLKLNPA---TPSLNGPSTQMCRKFNHGAAGLYWFNQ 124 L +ALHD+GK FQ AE ++PA P L P HG Sbjct: 86 LALVALHDLGKASPAFQVLWAEGKDGVDPALRFPPDLRKPYAP------HGV-------- 131 Query: 125 DSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQD---------KSRW- 174 +++ L DF + P P +AV HHG L ++D+D +RW Sbjct: 132 --VTQAVLPDFLTGL-GWPRPLARAV--ADAVGCHHG--LRAEDRDLNLPRAQTGDARWG 184 Query: 175 EMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGS- 233 ++ L A AR + + L + P LAG S ADWLGS Sbjct: 185 QVRRELCRLVALGTGARHDAVPTL------------SSFSPAAFMRLAGLTSFADWLGSS 232 Query: 234 --WTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVL-------------ELSGLVSNKR 278 T F ED + YF ++ A + L EL L R Sbjct: 233 FPLPTQTDFSAYEDPAA-------YFGRTRERARQTLAEIRWPAFAPLREELPALPEVFR 285 Query: 279 CYEGVHALLDNGYQPRQLQV-LVDALP--VAPGLTVIEAPTGSGKTETALAYAWKLIDQQ 335 + + D +QPR LQ L AL P L ++EAP G GKTE A +L Sbjct: 286 -----YVVKDGAFQPRPLQTKLAQALEGVSGPALVLVEAPMGEGKTEAAFYAHLQLQRAA 340 Query: 336 IADSVIFALPTQATANAMLTRMEA--SASHLFSSPNLILAHGNSRFNHLFQSIKSRAITE 393 + ALPTQAT NAM R +A + P+L LAHG + N FQ+ R Sbjct: 341 GHRGMYVALPTQATGNAMYERFAQFLAAQGRPTPPDLQLAHGGTLLNEKFQATIERTRNA 400 Query: 394 QGQE-EAW---VQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVL 449 G EA V+ +W + + K+ L + GV T+DQ L+ VL V H+F+R G+G V+ Sbjct: 401 PGDPAEAGGYSVRAEEWFT-NRKRALLSEYGVGTVDQALLGVLGVPHQFVRLWGLGNRVV 459 Query: 450 IVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNS 509 ++DEVHAYDTY + L+ A++ +G SV+L+SATLP ++ LL +G+ P + Sbjct: 460 VLDEVHAYDTYTSELIAALVAWLRALGSSVVLMSATLPEASRRALLRAWGMEDAPTAD-- 517 Query: 510 AYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQP-EPICLADMLPDLTMLER-MIAAANAG 567 YP + V G + L P+Q + +P + + L + ++ + R + A G Sbjct: 518 -YPRLTVAPVGG--KVQTLTIPDQDEVGNTSRPRQHVTLRPLGSEVGEVARHAVDLAADG 574 Query: 568 AQVCLICNLVDVAQ-VCYQRLKEL----------------NNTQVDIDLFHARFTLNDRR 610 V +I N V AQ V + L EL + V + L+HAR+ ++R Sbjct: 575 GCVAVIVNTVARAQAVQTEVLAELERRGITARTCTRGGGGDPRAVGVLLYHARYPADERG 634 Query: 611 EKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRH 669 E+E RV+ GK G+R IL+ATQV EQSLD D D ++T P DL+ QR GRLHRH Sbjct: 635 EREKRVLRYLGKEGQRPTRFILIATQVAEQSLDFDADVMLTDLAPVDLVLQRAGRLHRH 693 >UniRef50_A0LM50 CRISPR-associated helicase, Cas3 family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LM50_SYNFM Length = 854 Score = 238 bits (607), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 242/836 (28%), Positives = 365/836 (43%), Gaps = 94/836 (11%) Query: 7 ICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVA-DCWWDQSVVLQNTFCRNEMLSKQRVKA 65 + +WGK+S GN +H + H LD VA + Q + ++ + Sbjct: 6 VFRFWGKTS-----GNVVHPAVCHMLDTGIVACELLMVQPHGFISKLADEFGITTDALPQ 60 Query: 66 WLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQD 125 F ALHDIGK FQ K P L+ P F+ + + Sbjct: 61 LAAFLAALHDIGKISPGFQAKR-----------PDLSAPLKLEGYVFSRADEDRHTLSTL 109 Query: 126 SLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAA 185 L D D+ A+ HHG + Q A Sbjct: 110 ETLPDLLIDCLQCEDSLA------IALSRALAAHHGVFTGQEAQKVG-----------AG 152 Query: 186 QDKQAREEWISVLEALF--LTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFN 243 + +AR + L LF + GL P +LAG S++DWL S +L Sbjct: 153 KWIKARRAALEFLSRLFWDKSLTGLGFPSTP--ALVILAGLVSVSDWLSSAEENFPYL-- 208 Query: 244 EDAPSDINALRTYFQDRQQDASRVL-ELSGLVSNKRCYEGVHALLD----NGYQPRQLQV 298 P LR Y DR Q A ++ L VS+ E H L D N Q LQ Sbjct: 209 -TCPR--PDLREYVADRTQKARELVSRLRFDVSSPAATE-FHQLFDFTSPNPSQTVTLQT 264 Query: 299 LVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRME 358 + + P L VIE+P GSGKTE A A L + + +ALPTQAT NAML R Sbjct: 265 VNELH--HPMLVVIESPMGSGKTEAAQAVYAHLSCEAGLRGMYYALPTQATGNAMLPRTA 322 Query: 359 ASASHLF--SSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFL 416 + L + L L H N+ N ++ ++ I+ E V W + + K+ L Sbjct: 323 RFLTRLGLETGTELHLLHTNADLNQDYERLR---ISSLNAEPGDVSASSWFT-ARKRGLL 378 Query: 417 GQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVG 476 GV T+DQ L++ L V+H F+R G+ +L++DEVHAYD YM + ++ A Sbjct: 379 AAHGVGTLDQALLAALKVRHFFVRLFGLAGKLLVLDEVHAYDAYMVEEIYRLIGWLAHCH 438 Query: 477 GSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHP-EQLP 535 SV+LLSATLP +++KL+ + + V ++ YP + ++GA AHP E L Sbjct: 439 TSVVLLSATLPKARRKKLIQAFRPEVE-VPDDIRYPCVTGVDISGA----FAAHPIEGLK 493 Query: 536 PRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQV 595 P +I EP+ +L ++ G I N V AQ ++ L+ + Sbjct: 494 PD-TIYVEPVIAESTDKPARILSLLLEKLADGGCAACIMNTVGEAQDLHELLRH-HFPAD 551 Query: 596 DIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCP 655 ++ LFH+RFTL + E+ ++S + +GKR I++ATQV+EQSLDVDFD +IT P Sbjct: 552 EVLLFHSRFTLERKLRIEHDILSRYASDGKRPHRGIVIATQVIEQSLDVDFDLMITDLAP 611 Query: 656 ADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEG----YGRHEHIYSNVRVMWRTQQ 711 DLL QR GRLHRH R RP +L+P+ +G E++Y+ ++ +T Sbjct: 612 IDLLLQRAGRLHRHERA-RPQLLRPRNLWVLMPEFRSRLPDFGGSEYVYTP-DILLKTAL 669 Query: 712 HI---EELNGASLFFPDAYRQWLDSIY-DDAEMDEPEWVGNGMDKFES------------ 755 E+L+ + P ++ +Y DD + PE + M +E+ Sbjct: 670 LFSAEEDLSHLEVSIPTGVSALIECVYGDDFPPEVPEHLLGPMRGWEAKRLGDETSQTFF 729 Query: 756 AECEKRFKARKVLQ---WAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQL 808 A C +A+ L+ + + S+ DND+ VTR ++ P + V +G+ L Sbjct: 730 AACSALIEAKACLRDPDYLGQISM-DNDDDCAIVTR---LTRPNVMLVVVENGRCL 781 >UniRef50_D0Y922 CRISPR-associated helicase Cas3 n=2 Tax=Dehalococcoides RepID=D0Y922_9CHLR Length = 892 Score = 236 bits (601), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 236/792 (29%), Positives = 347/792 (43%), Gaps = 125/792 (15%) Query: 11 WGKSSKSLTKGNDI--HLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLL 68 W K+ + G D+ H L+YH LDVAAVA W+ ++ ++ R +A L Sbjct: 10 WAKTGR----GGDLYYHPLLYHMLDVAAVATHMWE--LLSEDQRKRIGYTLGNEARAITL 63 Query: 69 FFIALHDIGKFDIRFQYKSAE--SWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDS 126 F HDIGK FQ + + L + N P HG N+ Sbjct: 64 FLAGGHDIGKASPGFQQQVPQLSELTDLQVSVNDQNRP---------HGFVSACVLNR-- 112 Query: 127 LSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQ 186 FF+ + GHHG P SL + Sbjct: 113 --------FFTTVLG------------QIAGGHHGI-------------FPRSLDLRMGR 139 Query: 187 DKQAREEWISVLEALFLTPAGLSINDIPPDCSS-----------LLAGFCSLADWLGSWT 235 D EW L A + DI D LLAG S+ADW+GS Sbjct: 140 DILGNREWEIARNGLLQELAKVLKIDISDDTKCKPKIIDPFIIPLLAGLISVADWIGS-- 197 Query: 236 TTNTFLFNEDAPSDINAL--RTYFQDRQQDASRVLE----LSGLVSNKRCYEGVHALLDN 289 F P + L YF+ + A + L + G++ K E + + Sbjct: 198 -NQDFFPCLTKPGQLPELVGDKYFEVAKDRADKALHELGWMPGVIFAK---EAPFTHVFS 253 Query: 290 GYQPRQLQVLVDALPV---APGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPT 346 G+ P LQ ++ + + +P L +IEAPTG GKTE AL A + + A + A+PT Sbjct: 254 GFIPNSLQNSIEDIAIKQTSPYLMIIEAPTGQGKTEAALYAADLALCRGFARGIYIAMPT 313 Query: 347 QATANAMLTRMEA---SASHLFSSPNLILAHGNSRFNHLFQSIKSR------AITEQGQE 397 QAT+NAM R++ NL L HGN+ + + + A T+ G Sbjct: 314 QATSNAMFKRVQVDYLKNRRHKGKLNLQLVHGNALLAGMGEVREGEISDFKIADTDTGDT 373 Query: 398 EAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAY 457 ++ W + + K+ L GV TIDQ L+SVL +H F+R G+ V+I DE+HAY Sbjct: 374 NTDMEAQSWFT-AKKRPLLSPFGVGTIDQSLLSVLQTRHWFVRLFGLAGKVVIFDEIHAY 432 Query: 458 DTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINW- 516 D YM +LE +L+ A++ +VILLSATLP +++ L+ Y N YP I Sbjct: 433 DAYMITILERLLQWLAEIDCTVILLSATLPEARRKALIYAYSGQNS--SENKCYPRITLA 490 Query: 517 --RGVNGAQRFDLLAHPEQLPPRFSIQ-PEPICLADMLPDLTMLE-RMIAAANAGAQVCL 572 R + +L+ E S++ I L DL +L + G + Sbjct: 491 QSRHYINQETNELIVCKE-----VSVEDSHCIYLNFSRNDLEILAGELTRKLEHGGCAAV 545 Query: 573 ICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGR-- 630 IC+ VD + ++ L+ N + + LFHAR RRE+E+ V+ FGK K++ G Sbjct: 546 ICDTVDRSIEVFRYLQA-NMHETECLLFHARTLQVWRREREDEVLRKFGKGTKQHDGSYT 604 Query: 631 --------ILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPV 682 +LVATQV+EQSLD+DFD + ++ P DLL QR+GRLHRH R RP G E+P Sbjct: 605 NPDRPFRAVLVATQVIEQSLDLDFDLMFSEIAPVDLLLQRIGRLHRHSRT-RPEGLEMPQ 663 Query: 683 ATILLPDGEG------YGRH-EHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIY 735 TIL G +G++ EHIY ++ RT + A + P + ++ +Y Sbjct: 664 FTILCDGNRGGAPPDTFGKNIEHIYDRY-ILLRTWLVVR--GKAMIEVPAETEKLIEKVY 720 Query: 736 -DDAEMDEPEWV 746 D E+ P+W+ Sbjct: 721 GTDEEICGPDWI 732 >UniRef50_A5GBL7 CRISPR-associated helicase Cas3 n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5GBL7_GEOUR Length = 854 Score = 235 bits (600), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 249/872 (28%), Positives = 371/872 (42%), Gaps = 136/872 (15%) Query: 10 YWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLF 69 +W K++ G ++ H L+V VA C + S + F L V A Sbjct: 10 FWAKTTPEGKPGISVY---DHMLNVGCVARCIAETSPKILERF----HLESSMVGA---- 58 Query: 70 FIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMC----RKFNHGA---AGLYWF 122 ALHD+GK FQ K ++WL+ LN + C + +HG A ++ F Sbjct: 59 LAALHDLGKISPGFQRK-CDAWLE----EYGLNIIARNGCWDTAMESDHGKISHAAIHAF 113 Query: 123 NQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTG-HHGFILHSQDQDKSRWEMPASLA 181 ++ ++ F S AV G HHG + D+ ++ + A Sbjct: 114 LIETGMDRKTAKFAS-----------------AVLGAHHGRLTPPNDRGYRPQKLISDSA 156 Query: 182 SYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSL--LAGFCSLADWLGSWTTTNT 239 S D + +E + A S++D D +L LAG S+ADW+GS Sbjct: 157 SKIDWDNERKENARMTWAHFSGSSAEFSLSD---DSPALWWLAGLTSVADWIGS---DER 210 Query: 240 FLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVL 299 F E SD + T DA + L +++ +E + N Q + L + Sbjct: 211 FFSPERRASDEDV--TTLARMALDA--IGFLPPIINTNHSFESIFDFPSNDMQAKALATI 266 Query: 300 VDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRM-- 357 PG+ VIEAP G GKTE AL A++L+ A+ + FALPTQAT+N + RM Sbjct: 267 -----TGPGVYVIEAPMGMGKTEAALGAAYQLMVSGKANGIYFALPTQATSNRIHLRMNE 321 Query: 358 -------EASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQ----W 406 EA AS L HGNS L Q+ G++EA + W Sbjct: 322 FLRRIAPEAQASRLI--------HGNS---WLMQTDFGICPAATGKKEATTDDARAGRDW 370 Query: 407 LSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLE 466 + S K+ + GV T+DQ L+ V+ KH F+R + V+I+DE+H+YD Y L++ Sbjct: 371 FA-SAKRALIAPFGVGTVDQALLGVVAAKHFFVRHFALAGKVVILDEIHSYDLYTGTLID 429 Query: 467 AVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFD 526 ++ +G +VI+LSATL K++ +++ G D E YPLI G N Q F Sbjct: 430 KLITTLEGLGCTVIVLSATLTGKRRGQMVSCQGDLADEAER--PYPLIT--GRNEGQTFV 485 Query: 527 LLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQR 586 +A +++ + A E I A G V ICN V AQ Y+ Sbjct: 486 PVAAKPPASRSVTVEFRAVDAA--------TEEAIRVARNGGAVLWICNTVSAAQKQYRS 537 Query: 587 LKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDF 646 K L + + L H+RF R + E + FGK G G ILV+TQVVEQS+D+D Sbjct: 538 FKGL---EFPVGLLHSRFPFWQREKLEVEWMERFGKKGTTRCGSILVSTQVVEQSVDLDA 594 Query: 647 DWLITQHCPADLLFQRLGRLHRHHRKYRPAGF----------EIPVATILLPDG--EGYG 694 D +IT+ P D+L QRLGRL RH RK RP + I+ P + G Sbjct: 595 DLMITELAPTDMLLQRLGRLWRHDRKQRPVDVARLCIIEEDKSLEEFQIMEPKAIMKSLG 654 Query: 695 RHEHIYSNVRVM-----WRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNG 749 +Y+ ++ W+ Q + P RQ ++S Y + + D W Sbjct: 655 SKAKVYAPFILLRSLEVWKAQTQ-------PVSIPSQIRQLIESTYMERDTDPDSWQELF 707 Query: 750 MDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYV--QTSSGKQ 807 + F + ++ R W + +L D + TR EM P +P V + S K+ Sbjct: 708 NEWFGTDSAKEMIATRNCNIW--QVALNDEEGV---QTRLNEM--PTIPLVLCRALSEKE 760 Query: 808 LL-----DGQVYEDLSHEQQYEALALNRVNVP 834 + GQV D +A+ N V VP Sbjct: 761 AVFVDRSKGQVGGDDYLLAVAQAIHRNLVRVP 792 >UniRef50_A1ARI0 CRISPR-associated helicase, Cas3 family n=3 Tax=Bacteria RepID=A1ARI0_PELPD Length = 879 Score = 232 bits (591), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 261/929 (28%), Positives = 417/929 (44%), Gaps = 160/929 (17%) Query: 5 KYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEM---LSKQ 61 K + W K+ + H LI+H LDVAA AD + +T R L + Sbjct: 3 KKLSLIWAKTG--MNGDGTWHPLIFHMLDVAACADAILAREP--DSTRIRIAAILGLEWE 58 Query: 62 RVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYW 121 +AW+L +A HD+GK FQ K W + + P+T + NH + Sbjct: 59 IARAWILLVVACHDLGKACPGFQCK----WENMT-GIDTGRSPNTDI----NHA-----Y 104 Query: 122 FNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLA 181 +Q +L+E L + P E +AV HHG + + + A Sbjct: 105 VSQIALTEILLEKGW--------PDELAELVADAVGCHHG---NRASSIRLNYLSGDRRA 153 Query: 182 SYAAQDKQAREEWISVLEALFL---TPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTN 238 QAR + + +F+ P +++ PD LL+G S ADW+GS N Sbjct: 154 IGKGDWTQARLGLVDAVLNVFMPVQNPVKQTLSG--PDFM-LLSGLTSFADWIGS----N 206 Query: 239 TFLFNEDAPSDINALRTYFQDRQQDASRVLELSG------LVSNKRCYEGVHALLDNGYQ 292 F + L +FQ R+ +A L+ G L S + ++ V + Sbjct: 207 EEWFPFGGAEECGDLPGWFQKRRHNADLALDAIGWEPRTPLSSEPKSFQQVF-----DFV 261 Query: 293 PRQLQVLVDALPVA---PGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQAT 349 PR LQ V + V P + ++EAP G GKTE A +L + + ALPT+AT Sbjct: 262 PRPLQQAVADVLVGLSEPAIILVEAPMGEGKTEAAFFAHLELQRRFGHRGLYVALPTKAT 321 Query: 350 ANAMLTR----MEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAI--TEQGQEEAWVQC 403 NAM R + + +H +L L HG + N FQ+++ I E G + ++ Sbjct: 322 GNAMFKRTIKFIRSQGTH--RKLDLQLLHGGTLLNDTFQNLRLSGIHDPETGGD---IRA 376 Query: 404 CQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNG 463 +W + + K+ L + GV T+DQ L+ +LPV+H F+R G+ V++ DE+HAYD Y Sbjct: 377 GEWFT-NKKRALLSEYGVGTVDQALLPILPVRHNFVRLWGLANRVVVFDEIHAYDAYTGT 435 Query: 464 LLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLIN----WRGV 519 LL +L+ +G SV+LLSATLP ++KL D + D + YP ++ + V Sbjct: 436 LLIHLLRWLLALGSSVVLLSATLPPSIRRKLADA--VSADLPAQETQYPRLSVFCPGKEV 493 Query: 520 NGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCL-ICNLVD 578 N + A P + R +++ L + DL + + AG + L + N V Sbjct: 494 N---QIHFEADPGR---RLTLR-----LVGLPSDLPSIHNALVVHLAGGGMGLALLNTVQ 542 Query: 579 VAQVCYQ-------------RLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGK 625 AQ Y+ R+ + + ++ LFHARF ++ R+++E++V+ FG++G Sbjct: 543 RAQDLYRLFSEGEAMEYEGHRVGKRLSDGTEVFLFHARFPVDRRQKREDQVLKAFGQSGC 602 Query: 626 RNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATI 685 R+ +IL+ATQV EQSLD+DFD + T P DL+ QR GRL RH R +RP E PV + Sbjct: 603 RDERKILIATQVAEQSLDLDFDLIATDLAPIDLVLQRAGRLWRHARSFRPV--EEPVLLV 660 Query: 686 LLPDGE-----------GYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSI 734 G+ G E + + + T+Q+I PD + ++ Sbjct: 661 AGLAGDEPPSFEKPLWWGSVYREDLLLSTWCLLHTKQNIT--------LPDEIDSLVQAV 712 Query: 735 YDDAEMDEPEWVGNGMDKFESAECE---KRFKARKVL-------QWAE-EYSLQDNDE-- 781 Y++ ++D PE++ M+ AE + +R +A + W E ++ D DE Sbjct: 713 YEE-QVDIPEFLAERMNCAIFAEGKAISERQQANMAIIGFPDDASWKEVKFEKADEDEPG 771 Query: 782 ---TILAVTRDGE---MSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRV---- 831 +++A TR GE M++P+ + K+L DLS + A+ L+R Sbjct: 772 LHRSLVAQTRLGEPSVMAIPIFSADEFDPAKEL-----TFDLSKDFFLRAVNLSRKGVVK 826 Query: 832 -----NVPFTWKRS------FSEVVDEDG 849 VP WK+S F V+D +G Sbjct: 827 KLQKRGVPEGWKKSSLLRNCFPLVLDAEG 855 >UniRef50_C1DSH5 CRISPR-associated helicase Cas3, core n=3 Tax=Pseudomonadaceae RepID=C1DSH5_AZOVD Length = 901 Score = 231 bits (589), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 222/708 (31%), Positives = 314/708 (44%), Gaps = 105/708 (14%) Query: 11 WGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWD-QSVVLQNTFCRNEMLSKQRVKAWLLF 69 W KS + G L+ H LDVAAVA+ + + F L + + Sbjct: 17 WAKSGEPGGHG-----LLAHMLDVAAVAETLLEREPPATHECFAAQFGLPESVFSRHVAA 71 Query: 70 FIALHDIGKFDIRFQYK-----SAESWLKLNPATPSLNGPSTQMCRKFNHGAAG--LYWF 122 LHD GK FQ K + L A PSL R +H AG L W Sbjct: 72 LAGLHDFGKAIPGFQAKWPAGRERDEAHGLGFAEPSL--------RVTDHACAGAALLWR 123 Query: 123 NQDSLSEQSLGDFFSFFDAAPHPYESWFPWV-EAVTGHHGFILHSQDQDKSRWEMPASLA 181 + + + W V +A+ HHG+ + + R +PA A Sbjct: 124 HLPAQGAEP----------------GWIMGVLQAIGAHHGY---NPSVPEIRTAVPALEA 164 Query: 182 SYAAQDKQAREEWISVLEALF--LTPAGLSIND-IPPDCSSLLAGFCSLADWLGSWTTTN 238 A +QA + EA + L P G+ D +P + LAG S+ADW+ S + Sbjct: 165 PGWAPARQA------LFEAYWQALAPEGVPAADELPLPAVAWLAGLTSVADWIAS--DPD 216 Query: 239 TFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNK---RCYEGVHALLDN-----G 290 F E ++L +F+ + A++ LE G ++ R LL G Sbjct: 217 WFPPGERE----DSLAGHFRQAGKLAAKALEEIGWSPHRALLREPATTDELLGRIVRREG 272 Query: 291 YQPRQLQVLVDAL---PVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQ 347 R LQV D L P L ++EAP G GKTE A +L + ALPTQ Sbjct: 273 VAARSLQVEGDRLLSEARGPSLLLVEAPMGEGKTELAFLAHLRLQAANDHRGLYVALPTQ 332 Query: 348 ATANAMLTR-----------MEASASHLFSSP-NLILAHGNSRFNHLFQSIKSRAITEQG 395 A NA+ R L P ++ L HG + + Q ++ G Sbjct: 333 AIGNALFDRALTFLRGFDDRQPLDRQPLDRQPLDIQLVHGGAALDERVQRLRD----IHG 388 Query: 396 QEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVH 455 + + W SQ ++ L GV T+DQ L + L VKH F+R G+ V+++DEVH Sbjct: 389 GTDDSIASSAWFSQ-RRRPLLSPYGVGTVDQALFAALNVKHHFVRLWGLANRVVVLDEVH 447 Query: 456 AYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYP--- 512 AYD Y GL+E++L+ +G SV+L+SATLP +++ LL +G+ T+ V YP Sbjct: 448 AYDVYTGGLIESLLRWLRALGSSVVLMSATLPEQRRNALLQAWGVATERVPELP-YPRLL 506 Query: 513 LINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLER-MIAAANAGAQVC 571 L + RG+ A FD P PI L + DL L + + G Sbjct: 507 LADGRGLR-ATTFDSRPLP------------PIALESLDEDLDDLAACALRLLDGGGHGA 553 Query: 572 LICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNG--KRNVG 629 LI N V AQ Y+RL+ + +V + LFHARF ++R +E +V+ FG G + G Sbjct: 554 LIVNTVARAQELYRRLQPRLDEEVRLILFHARFPADERGMRERQVLEAFGNAGTDRPRPG 613 Query: 630 R-ILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPA 676 R +L+ATQV EQSLD+DFD+LIT P DL+ QR GRLHRH R PA Sbjct: 614 RCLLIATQVAEQSLDIDFDFLITDLAPVDLILQRAGRLHRHRRARVPA 661 >UniRef50_Q4JWJ6 Putative uncharacterized protein n=3 Tax=Corynebacterium jeikeium RepID=Q4JWJ6_CORJK Length = 950 Score = 229 bits (585), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 250/914 (27%), Positives = 365/914 (39%), Gaps = 142/914 (15%) Query: 14 SSKSLTKGNDIH---LLIYHCLDVAAVADCWWDQ--SVVLQNTFCRNEMLSKQRVKAWLL 68 +S L K D H L+ H +D AVA WD S ++ R+ L + +++ + Sbjct: 26 ASAFLAKSGDEHGPMSLVQHMVDSGAVATYLWDTWFSPQTKDFLSRSTRLPPEHIRSLAV 85 Query: 69 FFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLS 128 F +A HD+GK ++GP + R A LY + Sbjct: 86 FLVAAHDVGK----------------------ISGPFLRKLRSPETNAPLLYPLENAGIP 123 Query: 129 EQSLGDFFSFFDAA--PHPYES------WF-----------PWVEAVTGHHGFILHSQDQ 169 + D D A HP S W + V HHG++ + Sbjct: 124 ---IPDLTPDEDVANLAHPLYSRELLKRWLKTHGLKAPVALSLTQTVEAHHGWLTTA--- 177 Query: 170 DKSRWEMPASLASYAAQDKQAREEWISVLEAL-FLTPAGLSINDIPPDCS-SLLAGFCSL 227 R + + SY + + A +E + L + + PA + PP + ++ GF + Sbjct: 178 --GRKAVTTFVNSYPPEWQSAVDEILDTLASTAHVQPALDGLEGKPPTTAIQIITGFTVM 235 Query: 228 ADWLGSWTTTNTFLFNEDAPSDINA--------LRTYFQDRQQDASRVLELSGLVSNKRC 279 DWL S T F+ I L T F+ +D +++ E N R Sbjct: 236 CDWLASNTDFFPLRFSGSQADRIKLGMAKAKFDLHTEFKHFSEDPTQIAE------NYR- 288 Query: 280 YEGVHALLDNGYQPRQLQVLVDAL----PVAPGLTVIEAPTGSGKTETALAYAWKLIDQQ 335 V PR +Q V L P L +IEAPTG GKTE AL A Sbjct: 289 ---VSFAWPESATPRPVQFAVAELLNSNSPGPTLLIIEAPTGEGKTEGALQAALLFAQHN 345 Query: 336 IADSVIFALPTQATANAMLTRMEASASHLFSSP---NLILAHGNSRFNHLFQSIKSRAIT 392 A I A PT ATAN + R ++ + +L LAH +R N ++ ++ I Sbjct: 346 HASGAILAAPTMATANGLFKRFSCWVENITENSAVSSLYLAHSKNRLNKDYRKLRYSDIG 405 Query: 393 EQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVD 452 E + V WLS K L V TIDQVL+ L ++H +R L + V+I D Sbjct: 406 EDCADHGTVIATDWLS-GRKNGLLSNFVVGTIDQVLMMALQIRHSMLRHLALAGKVVIFD 464 Query: 453 EVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYG--LH-TDPVENNS 509 EVHAY TY N L L+ A G VILLSATLP +K++L+ YG +H D Sbjct: 465 EVHAYSTYTNEYLAETLRWLAAYGVPVILLSATLPTSRKKELVTAYGGQMHKNDLALAGE 524 Query: 510 AYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQ 569 YPL+ G + P+ + + I + D + +LT L + + G Sbjct: 525 GYPLLTLVTEEGVSEQAVTPRPDDMHAKVEI------IDDSVEELTRL--VTELCSDGGV 576 Query: 570 VCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVG 629 V +ICN + AQ + L + +V L H+ FT DR E +++ G +R G Sbjct: 577 VLVICNTIKRAQEAFTALDSVFPDEV--RLHHSAFTGLDRARHEEDLLNELGPASQRKQG 634 Query: 630 ----RILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHR-------KYRPAGF 678 RI+ TQ +EQSLD+D D LIT P DL+ QR GRLHRH R K R A Sbjct: 635 RPPLRIVCGTQTLEQSLDIDADALITDIAPMDLIIQRAGRLHRHQRPDSDRPEKLRDARI 694 Query: 679 EIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYD-D 737 I P E+IY + ++ Q E+ P Q + YD D Sbjct: 695 YIRGVEETTPVPIWDTGTEYIYDDALLLTTYQLLSTEVVETGFRRPSDVPQLVQRAYDLD 754 Query: 738 AEMDEPE-WVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDET-------------- 782 A+ + PE W ++E ++ R K ++ + + DET Sbjct: 755 ADHNFPEAWAA----RWEESKTSSRGKDDSDKSRSKVFRIPSPDETGKRLDSLFEMLVHD 810 Query: 783 -------ILAVTRDGEMSLPLLPYVQTSSGKQLLDGQ-------VYEDLSHEQQYEA--L 826 A RD + S+ ++P V G + L G V ED + A L Sbjct: 811 RSEEEIKATASVRDADNSIEIIPIVDDEYGYRPLPGLNNDQPECVVEDTTIPNFDTAFQL 870 Query: 827 ALNRVNVPFTWKRS 840 A + V +P + RS Sbjct: 871 AASTVRLPTMFTRS 884 >UniRef50_Q53VY2 Putative uncharacterized protein TTHB187 n=1 Tax=Thermus thermophilus HB8 RepID=Q53VY2_THET8 Length = 920 Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 246/908 (27%), Positives = 382/908 (42%), Gaps = 134/908 (14%) Query: 11 WGKSSKSLTKGNDIHLLIYHCLDVAAVA-DCWWDQSVVLQNTFCRNEMLSKQRVKAWLLF 69 W KS GN H L+ H LD AAVA + + + + L ++ AW Sbjct: 11 WAKS------GNPFHPLLAHMLDTAAVALAVLRMEPPRTRALYAEDWGLPEEGALAWAAA 64 Query: 70 FIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSE 129 + LHD+GK FQ E ++ A P ++ HG F + L E Sbjct: 65 LVGLHDLGKASPVFQAGWEEGKERVQRA----GLPFGELLDWVAHGVF-TELFLRRLLKE 119 Query: 130 QSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQ 189 + L P + A+ HHGF +++++ ++R + + + Sbjct: 120 KGL------------PERAANDLAAALGAHHGFPANAEEKSRARRHLRTEDPLWKEARRW 167 Query: 190 AREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSD 249 EE L A P + P+ + S ADW+ S + F + D P Sbjct: 168 LLEEVFRRLGAPL--PPSQGNGEARPEAVLRVMALASFADWVAS--DPSLFPYGRD-PRR 222 Query: 250 INALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDAL---PVA 306 + L+ + Q+ +R+ + + +R + + + +P LQ V AL Sbjct: 223 GDYLKEALRLAQEALNRLGWPAFAKAQRREFGELFPYIP---KPNALQESVPALLEGACT 279 Query: 307 PGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIF-ALPTQATANAMLTRMEASASHLF 365 P L ++EAP G GKTE AL YA L+ + ++ ALPTQATAN + R+ L Sbjct: 280 PVLLLVEAPMGMGKTEAAL-YAHHLLQAGLGHRGLYVALPTQATANGLFPRVRGFLERLG 338 Query: 366 --SSPNLILAHGNSRFNHLFQSIKSRAITEQ--GQEEAWVQCCQWLSQSNKKVFLGQIGV 421 S L L HG + N + + RA Q +EE W S + K+ L GV Sbjct: 339 EGSRLELQLQHGTALLNPHYAGLLERAAPRQVGEEEEGGAVASAWFS-ARKRAMLAPYGV 397 Query: 422 CTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVIL 481 T+DQ L+ VL VKH F+R G+ V+++DEVHAYD Y +GLL+A+L+ +G S ++ Sbjct: 398 GTLDQALLGVLRVKHHFVRLWGLMNRVVVLDEVHAYDVYTSGLLQALLRWLRALGSSAVV 457 Query: 482 LSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQ 541 ++ATLP +++ LL+ + ++ YP + G R LPP ++ Sbjct: 458 MTATLPPSRRRALLEAWAGEEVEGQDLGPYPRVVLVGEGVKAR--------SLPPAREVE 509 Query: 542 PEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVD----- 596 L ++ D+ L + + A GA V I N VD AQ Y+ L E ++ Sbjct: 510 VALEVLREV--DVEPLAQRLKGALPGA-VGAIVNTVDRAQDLYRALGEGTPLTLEELARR 566 Query: 597 ----------------------------------IDLFHARFTLNDRREKENRVISNFGK 622 + L HARF +R + + V++ FGK Sbjct: 567 LGGISGGQAWEEVRQALPERGGEVVGKVLTDGTLVFLLHARFPAEERALRGSVVLALFGK 626 Query: 623 NGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPV 682 G R ILVATQV EQSLD+DFD L T P DLLFQR GRLHRH R RP P Sbjct: 627 GGPRPPRAILVATQVAEQSLDLDFDLLYTDLAPIDLLFQRSGRLHRHERP-RPEEHARPR 685 Query: 683 ATILLPDGEGYGRH---EHIYSNVRVM--WRTQQHIEELNGASLFFPDAYRQWLDSIYDD 737 + +P+ +G+ + +Y + ++ WR + L P L+ IY+ Sbjct: 686 LLLGVPEDLDFGKPLYWDKVYEDYVLLATWRALSGRDRLR-----VPGDLEALLEEIYEG 740 Query: 738 AEMDE-PEWVGNGMDKFESAECEKRFKA-------------RKVLQWAE-----EYSLQD 778 + PE + K A E+R + R + W E + L+D Sbjct: 741 ENPESFPEGLRERAKKSLKALQERRDREANTARRLSLSELDRLLAYWDEGALVAQERLED 800 Query: 779 ND---ETILAVTRDGEMSLPLLPYVQTSSG---------KQLLDGQVYEDLSHEQQYEAL 826 ++ ET +TR G+ S+ ++P + G + L G+V + + A+ Sbjct: 801 DEEKAETQRLLTRLGDPSVAVVPLFRVGEGLFLDREGRRRAPLKGEVSREEAEALFRRAV 860 Query: 827 ALNRVNVP 834 L+R +P Sbjct: 861 RLSRFPLP 868 >UniRef50_Q0W588 Putative CRISPR-associated helicase n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W588_UNCMA Length = 889 Score = 229 bits (584), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 163/449 (36%), Positives = 230/449 (51%), Gaps = 30/449 (6%) Query: 305 VAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHL 364 + P L +IEAP G GKTE + A +L+ + + ALPT AT+N M R A Sbjct: 273 IKPRLLIIEAPMGEGKTEAGIYSAVQLLKEYDLSGMYVALPTAATSNQMFQRFNAFLDMH 332 Query: 365 FSSPNLI--LAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVC 422 S + L HG S S +A E G + +W S K+ + V Sbjct: 333 QSDKTVKARLVHGMSWLVDDASSFAVKA--ENGDGSDSYEMIEWFKPS-KRALIAPYSVG 389 Query: 423 TIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILL 482 TIDQ L+SVL VK F+R G+ VLI+DEVHAYD YM+ +L+ +L+ + + VI+L Sbjct: 390 TIDQSLMSVLKVKFGFLRLFGLANKVLIIDEVHAYDAYMSTILKLLLQWCSCLQIPVIML 449 Query: 483 SATLPMKQKQKLLDTYGLHTDP---VENNSAYPLINWRGVNGAQRFDLL-AHPEQLPPRF 538 SATLP ++K +LL+ Y +D + + YPLI +G L+ +++ R Sbjct: 450 SATLPSEKKLELLEMYRTSSDEPGRFKPSMDYPLITIVNADGGIYEKLVPGSSKRVNIRV 509 Query: 539 SIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDID 598 + + D++ L M ER + G +C+I N V AQ Y+R+K L+ + + Sbjct: 510 TKHEGYLGDYDLIASLAM-ERSV----NGGCICIIMNTVKGAQSVYERIKNLSTGEHQVM 564 Query: 599 LFHARFTLNDRREKENRVISNFGKNG----------KRNVGRILVATQVVEQSLDVDFDW 648 LFHARFT R E E + F K R ILVATQVVEQSLD+DFD Sbjct: 565 LFHARFTAGRRDEIEKNALRLFDKRSLLEEFDPDYQARPKRAILVATQVVEQSLDLDFDE 624 Query: 649 LITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGE--GYGRHEHIYSNVRVM 706 +IT+ P DLL QR GRLHRH RK RP G +P +LLPDGE +G E +Y V+ Sbjct: 625 MITEIAPIDLLLQRAGRLHRHDRKNRPTG-PVPQLHVLLPDGEKASFGSSEKVYERY-VL 682 Query: 707 WRTQQHIEELNGASLFFPDAYRQWLDSIY 735 RT + E + + P + ++++Y Sbjct: 683 LRTMDTLLERDLIEI--PSDIKTLVETVY 709 >UniRef50_A8LYZ3 CRISPR-associated helicase Cas3 n=1 Tax=Salinispora arenicola CNS-205 RepID=A8LYZ3_SALAI Length = 929 Score = 227 bits (579), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 215/776 (27%), Positives = 331/776 (42%), Gaps = 85/776 (10%) Query: 11 WGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSK--QRVKAWLL 68 WGKS+ + L++H +D AAVA WD+ + E L+ K+ ++ Sbjct: 13 WGKSNHLPRP----YPLLWHLIDTAAVAGALWDRYLAPNQRRVIAEGLATDDSHAKSLIM 68 Query: 69 FFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLS 128 F+ LHD+GK FQ K ++ L A G D+ Sbjct: 69 FWAGLHDVGKATPGFQKKDGSAFDALRSA-------------GSYEDVVGDGSLRHDTAG 115 Query: 129 EQSLGDFFSFFDAAPHPYES----WFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYA 184 + ++ D + P + + V GHHG + R ++ Sbjct: 116 QLAMPDLLAPLGYPPLVRRVSDRLAYRVAQIVGGHHGRFQQTSGPHGGRLQL-----GEG 170 Query: 185 AQDKQAREEWISVLEALFLTPAGLSINDIPPD----CSSLLAGFCSLADWLGSWTTTNTF 240 KQ R + V+ +P + PP S L+ G LADWL S F Sbjct: 171 GWSKQ-RAALVRVVHEAVGSP------ERPPAIGAAASVLVTGVVILADWLAS---QEHF 220 Query: 241 LFNEDAP----SDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQL 296 L + + + A+ T+ A+ +L+ +GL S G L + Q Sbjct: 221 LRQQSSRVPQYTGAEAVSTHLAVLSAPAAALLDDAGLGSPSYRALGFEDLFPHRPNALQR 280 Query: 297 QVLVDALPV--APGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAML 354 ++ + LPV +PGL V+ A TG GKTE AL A +L + A FALPT AT++ M Sbjct: 281 SIIEELLPVVDSPGLLVVTAATGDGKTEAALVAAKRLAEVCGAHGFFFALPTMATSDEMY 340 Query: 355 TRMEASASHLFSSPN-LILAHGNSRFNHLFQSIKSRAITEQG--------QEEAWVQCCQ 405 R+ A A+ L + P + L H S N +++ RA + G + V + Sbjct: 341 RRVRAFAARLAAGPAPVTLLHSMSWLNAEYEA---RAGVDPGDAAEVVSDEPSGDVVAPE 397 Query: 406 WLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLL 465 WL + K+ L + V T+DQ L++VL KH +R L + V +VDE HAYD + LL Sbjct: 398 WL-RGPKRGLLAPMAVGTVDQALLAVLTTKHNALRLLALSGKVFVVDEAHAYDDFTTSLL 456 Query: 466 EAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRF 525 +L G V+LLSATLP Q L+ Y N++ P W V Q Sbjct: 457 CGLLNWLGAYGCPVVLLSATLPSSQAATLVGAYEEGAGVGPTNTSVPYPGWTFVPAIQGR 516 Query: 526 DLLAHPEQL--------PPRFSIQPEPI-----CLADMLPDLTMLERMIA-AANAGAQVC 571 D ++ + F++ P+ +D ++ +++A A G Sbjct: 517 DTVSISPTMREALVSGRTVEFTLDVRPVRHLVGSESDPADRRAVVRQVLAPVAEQGGCAA 576 Query: 572 LICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRI 631 ++CN V+ AQ Y+ +++ + VD+ L H+RF R E ++I GK+G R I Sbjct: 577 VVCNTVNDAQQTYRVVRDWASGGVDVVLLHSRFPARRREEITTQIIGRLGKDGHRPRSMI 636 Query: 632 LVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGE 691 +VATQV+EQSLD+DFD L+T P L QR GR HR HR+ RP P +L P G Sbjct: 637 VVATQVLEQSLDLDFDLLVTDLAPMAQLLQRAGRCHR-HRRTRPPWAAQPRVVVLDPRGP 695 Query: 692 GYGRHEH------IYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMD 741 H +Y+ R + R H+ + P A + ++++Y +D Sbjct: 696 DGVEHVRPAAWGDVYA--RYLLRA-THLRLAGTDRIAVPHAVQNQVEAVYSPQSVD 748 >UniRef50_Q67RP4 Putative helicase n=1 Tax=Symbiobacterium thermophilum RepID=Q67RP4_SYMTH Length = 936 Score = 226 bits (576), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 234/783 (29%), Positives = 342/783 (43%), Gaps = 104/783 (13%) Query: 11 WGKSSKS--LTKG-NDIHLLIYHCLDVAAVADCWWDQSVV--LQNTFCRNEML-SKQRVK 64 W K+++ L +G H L H +D A VA W + L++ R L + Sbjct: 18 WAKTARGVELAEGEGHYHPLCCHMIDTAMVAWRMWRYVLPQRLRDQIRRQLGLQTDDEAG 77 Query: 65 AWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQ 124 W+ FF LHD+GK F + E W ++ + +GAA Sbjct: 78 RWIAFFAGLHDLGKATPAFAKQWPEGW---------------RLLTEQKYGAAS----GS 118 Query: 125 DSLSEQSLGDF--FSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLAS 182 +S L F S + P P + HHG + D + Sbjct: 119 ESKPHYVLTTFLLESLLEELGLPGAVAVPVAAVIGAHHGLFPTATDLRHAE--------R 170 Query: 183 YAAQDK--QAREEWISVLEALFLTPAGLSINDIPP----DCSSL---LAGFCSLADWLGS 233 YA + K +A+ + +L + G+ ++P +SL LAG S+ADW+ S Sbjct: 171 YAGKAKWQEAQAHLVRLLAHVL----GVDRLNVPTGDLWQANSLLVILAGLTSVADWIAS 226 Query: 234 WTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSG-----LVSNKRCYEGVHALLD 288 T F D L +Y + + A L G + R + + + Sbjct: 227 NHTYFPFA------GDRVRLPSYARQARWRAWMALHQLGWFHRPVAMAPRSFTELFDKVP 280 Query: 289 NGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQA 348 N Q +Q+ + D L P L ++E P G GKTE AL A L + FALPT A Sbjct: 281 NHLQ-KQVLAIADRL-SGPSLVLLEYPMGGGKTEAALYLADSLAVAAGQKGLYFALPTMA 338 Query: 349 TANAMLTRMEASASHLF--SSPNLILAHGNSRFNHLFQSIKSRAITE-----QGQEE--- 398 T+N M R+ + F S N+ L HG++ N F+ +++ + E G+E+ Sbjct: 339 TSNQMFGRVNRYLVNRFPGSRINVQLLHGHASLNAEFELLRAAHLQELERRRAGREQELA 398 Query: 399 -------AWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIV 451 A V +W + K+ L G+ TIDQ L+SVL KH F+R G+ V+I+ Sbjct: 399 AVGESTAATVLAAEWFT-YKKRGLLAPYGIGTIDQALLSVLQTKHFFVRLFGLAGKVVIL 457 Query: 452 DEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTD---PVENN 508 DEVHAYDTYM LL +L A G SV+LLSATLP ++ L+ Y P E Sbjct: 458 DEVHAYDTYMQTLLTRLLTWLAACGTSVVLLSATLPAHTRKALVAAYAAGRGLPAPAEPE 517 Query: 509 SAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANA-G 567 YP + W + H E R I L D R + A G Sbjct: 518 VTYPRVTWLTDMESN----AVHIEGAATRT------ITLRRYAQDDEGWMRALQEALVDG 567 Query: 568 AQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKN-GKR 626 +I N V AQ YQ+L++ + ++ LFHAR+ +DR +E V++ FG R Sbjct: 568 GCAAVIVNTVSRAQAVYQKLQDYFPPE-ELCLFHARYPFDDRMAREREVLTRFGPGIADR 626 Query: 627 NVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATIL 686 +LVATQVVEQSLD+DFD L+T P DL+FQR GRL RH R++RP GF P +L Sbjct: 627 PRRAVLVATQVVEQSLDLDFDLLVTDLAPVDLVFQRSGRLWRHRREWRPPGFTEPTLWLL 686 Query: 687 LP--DGEG---YGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMD 741 +P D +G + R + + M R+ + + + L PD ++++Y A D Sbjct: 687 MPPLDEQGVPQFERGSRLIYDHHTMLRSWLVLAQQD--HLCIPDQLEPMVEAVYRPA--D 742 Query: 742 EPE 744 PE Sbjct: 743 PPE 745 >UniRef50_C6SPI7 Predicted helicases n=1 Tax=Streptococcus mutans NN2025 RepID=C6SPI7_STRMN Length = 936 Score = 225 bits (574), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 238/924 (25%), Positives = 398/924 (43%), Gaps = 118/924 (12%) Query: 9 HYWGKSSKSLTKGNDIHL-LIYHCLDVAAVADCWWD-------QSVVLQN--TFCRNEML 58 ++W K K KG + L L+ H D VA W+ +++++ + T ++E Sbjct: 17 NFWAK--KREEKGQFLWLPLMQHLEDTKNVAGLLWEHWLGEGQKALIIASLKTGKKDEKT 74 Query: 59 SKQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAG 118 +KQ + F A+HDIGK FQ K + + ++ R G + Sbjct: 75 AKQLAQ----FLAAVHDIGKATPVFQSKKGYA-----NSKDLDLELLEKLERAGFEGISS 125 Query: 119 LYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPA 178 + N + G + ++ + V GHHG + + K++ + Sbjct: 126 ITLANPEKSPHALAGQYILHYNKVKEDIAT------IVGGHHGKPVDDRATYKNQRSQES 179 Query: 179 SLASYAAQDKQAREEWISVLEALF---LTPAGL-SINDIPP---DCSSLLAGFCSLADWL 231 + ++W E + L +G S++++P +L+G +ADW+ Sbjct: 180 NYYQSGKSGNTIYQKWERAQEEILNWALEVSGFKSVDELPTIKQPAQVILSGLLIMADWI 239 Query: 232 GSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRC----------YE 281 S NED I+ D ++ ++ LSG KR +E Sbjct: 240 AS---------NEDYFPLISI------DEREVENKADRLSGFEKWKRSSLWVSRNTWDFE 284 Query: 282 GVH-ALLDNGYQPRQLQVLVD---ALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIA 337 G++ A D ++PR +Q ++ A PG+ ++EAP G GKTE AL +L ++ Sbjct: 285 GLYQARFD--FEPRDVQAVLSKTIADTEQPGIFILEAPMGIGKTEAALVATEQLAEKTDR 342 Query: 338 DSVIFALPTQATANAMLTR----MEASASHLFSSPNLILAHGNSRFNHLFQSI-KSRAIT 392 + + F LPTQAT+N + R +E+ L + ++ L HG + N F + K +I Sbjct: 343 NGIFFGLPTQATSNGIFPRIEKWLESIKEDLDDNISIQLVHGKAALNADFSELPKGISIN 402 Query: 393 EQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVD 452 E V +W S K L V T+DQ L+ L KH +R LG + V+++D Sbjct: 403 IDDFENGSVIVNEWFS-GRKTAVLDDFVVGTVDQFLMLALKQKHLALRHLGFSKKVVVID 461 Query: 453 EVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTY----GLHTDPVEN- 507 EVHAYD YMN L L+ G VI+LSATLP ++++KLL +Y G + E Sbjct: 462 EVHAYDAYMNQYLLEALRWMGAYGVPVIILSATLPAERREKLLKSYMFGMGKRFEEKEKE 521 Query: 508 -------NSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERM 560 AYPLI + NG FD+ E F L L + +L+ + Sbjct: 522 QLSKQLKTEAYPLITYN--NG---FDICQITE-----FKKGENKKILLSQLEEEDLLDTV 571 Query: 561 IAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNF 620 + G +I N V AQ + + + +++FH+ F +R KE ++ Sbjct: 572 KGLLSDGGVAGIIVNTVKRAQKIAKVFADSLGEDM-VEIFHSGFIATERVRKEQELLKMI 630 Query: 621 GKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEI 680 GK+ R +I++ TQV+EQSLD+DFD +I+ P DLL QR+GRLHR H+ RP Sbjct: 631 GKDANRPYRKIIIGTQVIEQSLDIDFDVMISDLAPMDLLIQRMGRLHR-HKIDRPQKHVF 689 Query: 681 PVATIL-LPDGEGYGRHEHIYSNVRVMWRTQQHI-EELN---GASLFFPDAY-------- 727 P ++ + D + ++ RTQ ++ + +N S+ Y Sbjct: 690 PKFYVIGMNDDLKFEEGSSFVYGDYLLARTQYYLPDSINLPEDISILVQKVYDEKLELDY 749 Query: 728 -RQWLDSIYDDAEMDEPEWVGNGMDKFESAEC------EKRFKARKVLQWAEEYSLQDND 780 + LD Y +A+ + +GN K + E R + ++ W E D+D Sbjct: 750 PTELLDKKYHNAKSEHETKIGNKESKARDYKIADPVLRETRSRKENLIGWLENSHPDDSD 809 Query: 781 ETILAVTRDGEMSLPLLPYVQTSSGKQLL-DGQ-VYEDLSHEQQYEALALNRVNVPFTWK 838 E A RD E + ++ + G L +G+ + E ++ + +A N + +P Sbjct: 810 ERAYAQVRDIEDIVEVIALKKVGDGYALFGEGEDLSELITDFNIAKKVAQNTLRLPIALT 869 Query: 839 RSFSEVVDEDGLLWLEGKQNLDGW 862 +S++ V D L + + NL+ W Sbjct: 870 KSYN-VDDTIKELEMYSRMNLNNW 892 >UniRef50_B8FDH5 CRISPR-associated helicase Cas3 n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FDH5_DESAA Length = 851 Score = 225 bits (573), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 197/661 (29%), Positives = 296/661 (44%), Gaps = 99/661 (14%) Query: 30 HCLDVAAVADCWWDQSV--VLQNTF-CRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYK 86 HC V VA W + + ++Q F C +E+++ A+HDIGK FQ K Sbjct: 41 HCKIVGMVAREWMQRQLEWLVQKLFPCGSELIA------------AIHDIGKISPGFQEK 88 Query: 87 SAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPY 146 S P L P ++++G F+ AA Sbjct: 89 IYRSL----DMVPGLAAPDL----------------------DKNVGYHFTVSQAAARDL 122 Query: 147 ESWFPWVEAVTGHHGFILHSQD-QDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTP 205 + P E V HHG S D + P A K+ RE + S + Sbjct: 123 GRYVP--EIVGRHHGISPASPGYPDDEIYGGPTWQAERMNTVKRLREYFQSSWPEV---- 176 Query: 206 AGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDAS 265 ++DI D +L+G ++ADW+GS DAP + + ++ + + Sbjct: 177 ----VSDIHAD---VLSGLTTVADWIGS-----ALDICPDAPQGLPS----DEELSRMTA 220 Query: 266 RVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETAL 325 + L+ +G + R G+ + P LQ + +PG+ V+EAP G GKTE AL Sbjct: 221 KALDDAGFI-RPRINSGLTFKDIFSFSPYSLQAEMAQAVSSPGVYVLEAPMGMGKTEAAL 279 Query: 326 AYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQS 385 A+K +++ A V FALPTQ T++ M RM + H N+ H Sbjct: 280 FAAYKALEENRATGVYFALPTQLTSDKMHERMNKFLDVILDQN---CPHKNALLLHSAAW 336 Query: 386 IKSRAITEQGQ-EEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGI 444 +++ + E G+ +++W K+ L V T+DQ L++ + VKH F+R + Sbjct: 337 LRATEMGEDGRPDKSWFDY-------RKRGLLAPFAVGTVDQALMAAMNVKHGFVRTFAL 389 Query: 445 GRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDP 504 +I+DEVH+YD Y +L+ +++A ++ +VI+LSATL ++ +L+ Y P Sbjct: 390 AGKCVILDEVHSYDAYTGVILDRLVQALREIHCTVIILSATLDTTRRAELI--YSPGETP 447 Query: 505 VENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQP---EPICLADMLPD-LTMLERM 560 + YPLI AHP PP+ P EP L + PD LE Sbjct: 448 ASVDDVYPLIT-------------AHPNSGPPQAIASPAVEEPEILTRIHPDDEEALEEA 494 Query: 561 IAAANAGAQVCLICNLVDVAQVCYQRL-KELNNTQVDIDLFHARFTLNDRREKENRVISN 619 I A G QV I N VD A+ +QRL ++ L H+RF DR E+ Sbjct: 495 IDRAQQGQQVLWIENTVDGAREVFQRLGARTAGLGIESGLIHSRFLKVDRETNESYWSGV 554 Query: 620 FGKNGKRNVG---RILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPA 676 FGK G+ G RILV TQV+EQSLD+D D+L+++ CP D++ QRLGRL RH RP Sbjct: 555 FGKTGREKRGEQGRILVGTQVLEQSLDIDGDFLVSRLCPTDMILQRLGRLWRHDINVRPK 614 Query: 677 G 677 G Sbjct: 615 G 615 >UniRef50_A8SDS1 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SDS1_9FIRM Length = 918 Score = 224 bits (571), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 227/742 (30%), Positives = 328/742 (44%), Gaps = 91/742 (12%) Query: 27 LIYHCLDVAAVAD----CWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIR 82 L H D A + + W +S F R E L A F +HDIGK + Sbjct: 40 LWMHLWDTAGIMERLVRQWLPESAKRAMGFEREEALL-----AHARFLGGIHDIGKATVA 94 Query: 83 FQYKS----AESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSF 138 FQ E+ +L TP L+ P Q R+ H AG + Sbjct: 95 FQANILRTLPEARQRLEMLTP-LDCPE-QNRRESPHARAG---------------EAILL 137 Query: 139 FDAAPHPYESWFPWVEAVTGHHGF--ILHSQDQDKSRWEMPASLASYAAQDKQAREEWIS 196 ++ P S V HHG + D WE Y K+ E + + Sbjct: 138 WNDCPGGLAS------IVGAHHGRPQSCAAVDDQLECWES----NYYPKGQKKVWESFWT 187 Query: 197 VLEALFLTPAGL----SINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINA 252 L L G + D+ P LL G +ADW+ S T + E+ S Sbjct: 188 ELLMTVLQDCGFDDTAELYDLDPQEEVLLTGLLIMADWIASNTEYFPLIPVEELGS---- 243 Query: 253 LRTYFQDRQQDASRVLELSGLVSNKRCYEGV----HALLDNGYQPRQLQ-VLVDALPVA- 306 +D R E L G+ + G+ P +Q +++A+ A Sbjct: 244 ----MEDYPARVDRAWEKLALPFPWEAQPGIADPQEFAVRFGFAPNAVQRAVLEAVDTAA 299 Query: 307 -PGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRME--ASASH 363 PG+ ++EA G GKTE ALA A + + V F LPTQATAN + R+ A Sbjct: 300 EPGILILEAQMGVGKTEAALAAAEIMASRFGLGGVFFGLPTQATANGIFPRLLGWADTQT 359 Query: 364 LFSSPNLI-LAHGNSRFNHLFQSIKSRAI--TEQGQEEAWVQCCQWLSQSNKKVFLGQIG 420 + P I LAHG + N + ++ R + E QEE VQ QW + NK+V L Sbjct: 360 EETLPQAIKLAHGMAELNENYLRLQGRGVQLEEDAQEEHRVQVHQWF-RGNKQVLLANFV 418 Query: 421 VCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVI 480 + T+DQ+L++ L KH +R LG+ V+I+DE HAYDTYMN L+ L+ VI Sbjct: 419 IGTVDQLLLAALAQKHVMLRHLGLAGKVVIIDECHAYDTYMNCYLDRTLEWLGWYKVPVI 478 Query: 481 LLSATLPMKQKQKLLDTY----GLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPP 536 LLSATLP +++ +L++ Y P E + YPL+ W NGA+ A P P Sbjct: 479 LLSATLPARRRTELVEAYQQKKAAPDAPWETSCGYPLLIW--TNGAE-VKQTAIPSDAPG 535 Query: 537 RFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVD 596 + ++Q + P+L L R A A V I N V AQ Q L+E + + Sbjct: 536 Q-TVQLTTLTE----PELPALLRRKLAEGGCAGV--IVNTVKKAQKIAQLLRE-SLPDKE 587 Query: 597 IDLFHARFTLNDRREKENRVISNFGKNGK---RNVGRILVATQVVEQSLDVDFDWLITQH 653 + LFHA+F + DR +EN++++ GK RN I+V TQV+EQSLD+D D L+T+ Sbjct: 588 VQLFHAQFLMPDRAARENQLMARIGKGSAPECRN-DLIVVGTQVMEQSLDIDLDVLVTEL 646 Query: 654 CPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHI 713 CP DLL QR+GRLHRHHR RPA + +L + + ++WRT++ + Sbjct: 647 CPMDLLLQRIGRLHRHHRS-RPAPLQQACCAVLDTGEDAFDAGSEAVYGQWLLWRTRKFL 705 Query: 714 EELNGASLFFPDAYRQWLDSIY 735 S+ P+ + +Y Sbjct: 706 PR----SIRLPEEISPLVQRVY 723 >UniRef50_C2BEU2 CRISPR-associated helicase n=1 Tax=Anaerococcus lactolyticus ATCC 51172 RepID=C2BEU2_9FIRM Length = 920 Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 139/420 (33%), Positives = 209/420 (49%), Gaps = 24/420 (5%) Query: 307 PGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFS 366 PG+ +IEAP G GKTETAL L + + F LPTQAT+N + TR+ H+ Sbjct: 303 PGIFIIEAPMGIGKTETALIAVEDLAKKTNRTGMFFGLPTQATSNGIFTRVREWLDHIEG 362 Query: 367 SPNLILAHGNSRFNHLFQSI-KSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTID 425 +L L HG ++ N F + KSR I G +E V +W + K L V T+D Sbjct: 363 EKSLRLIHGKAQLNDEFSKLPKSRNI--HGGDEVGVN--EWFA-GRKVSILDDFTVGTVD 417 Query: 426 QVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSAT 485 Q+L+ L KH +R LG+ V+++DEVHAYD YM+ L L+ V++LSAT Sbjct: 418 QILLVALKQKHLMLRHLGLANKVVVIDEVHAYDAYMSVFLYRALRWLGAYKVPVVILSAT 477 Query: 486 LPMKQKQKLLDTYGL----------HTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLP 535 LP+ ++ LL+ Y + + E N AYPL+ + +GA + Sbjct: 478 LPISKRNALLEAYMIGAELGYDRLPKPEGFEINEAYPLLTYN--DGASIKQFADFKKDAG 535 Query: 536 PRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQV 595 + I + ++ L L + E G V + + A+ C + E Sbjct: 536 RSYKIIKKSKGESEDLVSL-IKENTAQGGVVGVMVNTVRKAQNFARKCIEVFGEDR---- 590 Query: 596 DIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCP 655 ++L H+ F DR +KE +I GKNG R +I++ TQV+EQSLD+DFD LIT P Sbjct: 591 -VELLHSSFISTDRYKKEKNLIETIGKNGNRPDFKIVIGTQVIEQSLDIDFDILITDLAP 649 Query: 656 ADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEE 715 DL+ QR+GRLHRH RP + P+ +L G + + + +++RT+ ++ E Sbjct: 650 MDLILQRMGRLHRHKETKRPENLKNPMVYVLNCGGYDFDKGSSFVYSEYILFRTEYYLPE 709 >UniRef50_Q2JH31 CRISPR-associated helicase Cas3, core n=2 Tax=Frankia RepID=Q2JH31_FRASC Length = 962 Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 227/748 (30%), Positives = 321/748 (42%), Gaps = 103/748 (13%) Query: 5 KYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFC-RNEMLSKQRV 63 ++ WGKS++ G +HLL+ H LD AAV + WD+ L +T R + S R Sbjct: 16 EFFGMIWGKSAEK--AGGSMHLLLGHLLDTAAVGELVWDR--FLASTIRDRLDDCSDGRG 71 Query: 64 KAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLY--- 120 ++ LHD+GK FQ K ++ A G + Q R+++H AG Sbjct: 72 RSLFALLCGLHDVGKATPAFQMKDEGLAQRVRAAGLGWRGVTPQQGRQWHHARAGAVIVR 131 Query: 121 -WFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRW-EMPA 178 + Q S P W W V GHHG I D+ R PA Sbjct: 132 KYLPQVGWSR---------------PGCDWV-W-PLVAGHHGLI-----PDRGRLVHKPA 169 Query: 179 SLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSL-LAGFCSLADWLGSWTTT 237 + D Q R V L + A S P L L+G +ADW+ S Sbjct: 170 VHGAGPWLDVQ-RAFVDRVAGDLNVDLASFSELRTPSRGGQLALSGMIIMADWVASDKEH 228 Query: 238 NTFLFNEDAPSDINALRTY-FQDRQQDASRVLELSGLVSNKRCYEG-----VHALLDNGY 291 L SD+ + ++R Q A L L G + R G VH Sbjct: 229 FGGL------SDLAEISMKGSRERAQRAWAQLGLRGGWRSDRPAPGNQSDLVHHRFGKPA 282 Query: 292 QPRQLQVL--VDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQAT 349 +P Q + V +P PGL ++EAP G GKTE ALA A L + AD V +PTQAT Sbjct: 283 RPAQRAAVQAVREMP-GPGLLILEAPMGEGKTEAALAAAEVLAGKVGADGVFVGMPTQAT 341 Query: 350 ANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRA--------ITEQGQEEAW- 400 ++ M +R+ + + + L HG +RFN + +++S+ + E G + + Sbjct: 342 SDPMFSRVRGWLTAVDPEVPIGLLHGRARFNKEWAALRSQVRFVDVHDDLDEYGMADDFG 401 Query: 401 ----------------VQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGI 444 +W S K+ L + V T+D +L + KH +R G+ Sbjct: 402 TGTSGPGRRDAPLAGAAAAAEWFFGS-KRGLLAAVTVGTVDHLLQAATRTKHVMLRHAGL 460 Query: 445 GRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTY--GLHT 502 V+I+DEVHAYD YM L L+ AD G VI+LSATLP + +L Y G Sbjct: 461 AGRVVILDEVHAYDVYMAQFLFEALRWLADTGVPVIVLSATLPPVLRAQLAGAYLQGALQ 520 Query: 503 DP------VENNSAYPLINW-RGVNGAQRFDLLAHP---EQLPPRFSIQPEPICLADMLP 552 P + + YP +G RF + + E +P I EP D P Sbjct: 521 RPDVDLADLPRPTGYPSTTAVYMADGKPRFSVTSQSPWRESVPVAVEILAEPT---DFAP 577 Query: 553 DLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREK 612 +++ + A + G ++CN V AQV Y L+ D+ L H+RFT +R + Sbjct: 578 -VSIAAAVSAEVSEGGCALVVCNTVQRAQVVYAELRTTFGD--DVVLLHSRFTAAERASR 634 Query: 613 ENRVISNFGKNGKRNVGR-----ILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLH 667 V+ G G+ N ++VATQV EQS DVD D L+T P DLL QR+GRLH Sbjct: 635 TEDVVDKLGPPGRENAQDRPARLVVVATQVAEQSFDVDVDILVTDLAPIDLLLQRVGRLH 694 Query: 668 RHHRKY--RPAGFEIP---VATILLPDG 690 RH R RPA P V+ + LPDG Sbjct: 695 RHDRPTGQRPARLRDPKVIVSGLRLPDG 722 >UniRef50_A8LM38 Cas3: CRISPR-associated helicase Cas3 n=1 Tax=Dinoroseobacter shibae DFL 12 RepID=A8LM38_DINSH Length = 857 Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 207/716 (28%), Positives = 313/716 (43%), Gaps = 109/716 (15%) Query: 11 WGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFF 70 WGK+ + G H L +H +DVAAV + V+ + K AWL F Sbjct: 18 WGKTDAA---GRPSHHLAHHSMDVAAVLEGLLRHPVISARAAAAAGIYLKPEAVAWLSAF 74 Query: 71 IALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQ 130 LHDIGK RFQ A+ W P +H + GL W ++ Sbjct: 75 AFLHDIGKLSPRFQ---AKVW------------PDGIAGGTASHLSEGLIWADR------ 113 Query: 131 SLGDFFSFFDAAPHPYESWF-------PWVEAVTGHHG-------FILHSQDQDKSRWEM 176 L D D A P + W A+ HHG F+ +D R ++ Sbjct: 114 -LLDGQPLLDGAAGPLVAPLVAGGMEKAWFGALLAHHGRPMAFDSFVYPPNPRDVFR-DV 171 Query: 177 PASLASYAAQDKQ---AREEW-------ISVLEALFLTPAGLSINDIPPDCSSLLAGFCS 226 P + A+D++ A +W ++VL + L L AG + Sbjct: 172 PGY--DWRAEDRRMGAALRQWFPEIAIDLAVLRSHRLV--------------HLFAGLLA 215 Query: 227 LADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHAL 286 LADW+GS F D D Y + A+ L GL SN + Sbjct: 216 LADWIGS--DDGAFPQRRDFDPD------YGASARARAAAALVAIGL-SNPAWPGTAPSF 266 Query: 287 LD-NGYQ-PRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFAL 344 D G+ PR +Q + +P+ L +IEA TGSGKTE ALA+ +L + D++ FA+ Sbjct: 267 RDLTGHPVPRGVQQTIADIPLEARLVIIEAETGSGKTEAALAHFARLRSEGRVDALYFAV 326 Query: 345 PTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAW-VQC 403 PT+A A + R++ + + + P +LA + ++ + G W Sbjct: 327 PTRAAAGQLHRRIQEAMARI-GGPEAVLA-----VPGMLRAGLAEGRKLPGFRVLWDDDR 380 Query: 404 CQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNG 463 W ++ + + V TIDQ L++ L VKH +R + RS+L++DEVHA D YMN Sbjct: 381 VHWAAEHPTRFLAAPVAVGTIDQALLAGLQVKHAPLRAAALSRSLLVIDEVHASDAYMNA 440 Query: 464 LLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQ 523 + ++ +GG +L+SATL Q+ L + + YP I W A Sbjct: 441 VARPLVAGHTALGGHTLLMSATLGAGQRAAWLGQPA-PSQRAASGLPYPAI-WHDAAPAD 498 Query: 524 --RFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQ 581 R D + + + + PR L + + +AAA GA+V ++ N V+ A Sbjct: 499 PLRPDPVGYAKSVHPR---------LVGTMDAEAAAHKAVAAAEKGARVLVLRNTVEAAV 549 Query: 582 VCYQRLKELNNTQVDI--------DLFHARFTLNDRREKENRVISNFGKNGKRNVGRILV 633 + + + D+ L HARF DRR+ + V G+ G G +++ Sbjct: 550 ATW---RAATRARADLCLSVLGQPALHHARFAAEDRRKLDAAVEQALGRAGV-TTGIVVL 605 Query: 634 ATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPD 689 TQ +EQSLD+D D+LIT CP D+L QR+GRLHRH + RPAGFE VA+I++P+ Sbjct: 606 GTQTLEQSLDIDADFLITDLCPMDVLLQRIGRLHRHADRTRPAGFEAAVASIMVPE 661 >UniRef50_Q1GAI8 CRISPR-associated helicase Cas3 n=3 Tax=Lactobacillus RepID=Q1GAI8_LACDA Length = 921 Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 238/849 (28%), Positives = 352/849 (41%), Gaps = 131/849 (15%) Query: 1 MEPFKYICHYWGKSSKSLTKGNDIHL-LIYHCLDVAAVA----DCWWD--QSVVLQNTFC 53 M+ K WGK KS G++ L L+ H +D V + W Q +L C Sbjct: 1 MKLSKEALSLWGK--KSNQDGDEHWLPLVAHMVDTMNVGHWLYNSWLSEGQRSMLTTRIC 58 Query: 54 RNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYKSA--------ESWLK--LNPATPSLNG 103 EM + F +HD+GK FQ K + E + ++ + LN Sbjct: 59 DAEM------SKLVSFLCYIHDLGKATPAFQTKESYNHDHQLDEELIHRLVSHSFKKLND 112 Query: 104 PSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFI 163 S K H AG + L+E V GHHG Sbjct: 113 LSLPSRSKSPHARAGEAILERAGLNETIAA---------------------IVGGHHG-- 149 Query: 164 LHSQDQDKSRWEMPASLASY--AAQDKQAREEWISVLEALF---LTPAGLS-INDIPP-- 215 Q+ D+ ++ ++Y A D++ ++ W L L AG I+++PP Sbjct: 150 -KPQNGDQEE-QIDVFTSNYYQADNDEEIQQPWKDAQRELIDYGLELAGYEDISEVPPVN 207 Query: 216 -DCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPS-DINALRTYFQD-----RQQDASRVL 268 + +L G +ADWL S T N + D P ++ L F D R Q+A Sbjct: 208 QPEAVILEGLLIMADWLASSTCLNN---DPDKPMFNLIGLDQSFDDLDMKARYQNAISTW 264 Query: 269 ELSGL-----VSNKRCYEGVHALLDNGYQPRQLQVLVD---ALPVAPGLTVIEAPTGSGK 320 ++ V+N Y H ++PRQ+Q ++ V PGL +IEA G GK Sbjct: 265 AINDAWIPEEVANVDYYYEQHF----SFKPRQIQAAMEEHVKEAVDPGLVIIEAEMGIGK 320 Query: 321 TETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFS----SPNLILAHGN 376 TE AL A +L V LPTQAT NAM R+ + + + +P++ L HG Sbjct: 321 TEIALTAAEQLAYVTGRTGVYIGLPTQATTNAMFDRVNSWLTKIAGIEGINPDIKLLHGK 380 Query: 377 SRFNHLFQSI-KSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVK 435 + +N + + ++ I + + V W S KK L V TID +L+ L K Sbjct: 381 AEWNSRYTDLPRAEDIEAEELDAGTVTVNSWFS--GKKSILADFAVGTIDNLLLMGLKQK 438 Query: 436 HRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLL 495 H F+R LG V+I+DEVHAYD YM L LK V++LSATLP +++ +L+ Sbjct: 439 HLFLRHLGFSNKVVIIDEVHAYDMYMQSYLSKALKWLGAYHVPVVILSATLPKEKRNELI 498 Query: 496 DTY--GLH---------TDPVENNSAYP---LINWRGVNGAQRFDLLAHPEQLPPRFSIQ 541 +Y G + + E+N AYP L++ + + F A P ++ + I Sbjct: 499 KSYIKGKYRRVKKVLQAQEGWESNRAYPLLSLLDGKELRQYSDFGPKAEPREMQVNY-IN 557 Query: 542 PEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFH 601 EP +L ++ G +I N V A Q L + H Sbjct: 558 DEPT---------EVLAKVNDKIKDGGIAGIIVNTVKRA----QEFAGLVGQDCQCLVLH 604 Query: 602 ARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQ 661 + F DR E + S GK GKR I++ TQV+EQSLD+DFD + T P DLL Q Sbjct: 605 SAFLATDRSRLEKELQSLIGKKGKRPDKLIVIGTQVLEQSLDIDFDVMFTDIAPIDLLLQ 664 Query: 662 RLGRLHRHHRKYRPAGFEIPVATILLPDGEGYG-RHEHIYSNVRVMWRTQQHIEELNGAS 720 R GRLHR H+ RP G E ++ PD + YG +E +Y + Q E Sbjct: 665 RAGRLHR-HKISRPKGLEKRQLYVMKPDSDDYGPANEAVYEKYYL-----QKTEHFLPQK 718 Query: 721 LFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDND 780 + P+ + + +YD+ D+ E + DK ++ KA S Q ND Sbjct: 719 IQLPNDISRLVQLVYDEDTDDQVENLDEARDKLNVDRNREKSKAE---------SFQIND 769 Query: 781 ETILAVTRD 789 A D Sbjct: 770 PVYPAAKND 778 >UniRef50_D1NTH7 CRISPR-associated helicase Cas3, core n=1 Tax=Bifidobacterium gallicum DSM 20093 RepID=D1NTH7_9BIFI Length = 1019 Score = 215 bits (547), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 217/771 (28%), Positives = 324/771 (42%), Gaps = 111/771 (14%) Query: 1 MEPFKYIC----------HYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVV--L 48 +EPFK + WGK+ + G L H D VAD W Q + Sbjct: 2 VEPFKKLQGSIDLSEAARSIWGKTDRQ--TGEQWSPLYVHMHDAGFVADRLWYQWLPEHT 59 Query: 49 QNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQM 108 + T RN + ++F A+HDIGK FQ +S ++ S+ Q Sbjct: 60 KRTITRNFNNDYDLARKVVIFLAAVHDIGKATPIFQNRSIHISGDVD-GVKSMAWKPEQA 118 Query: 109 CRKFN---HGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILH 165 F+ G + + + E+ L D + F Y S V GHHG Sbjct: 119 GLPFSPYLEGVEPYHTIAGELILERYLTDTYGFTQRGARSYAS------VVGGHHGRPAE 172 Query: 166 S---QDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAG---LSINDIPPDCSS 219 + +D K EM +S A Q+ Q RE ++ LT A L ++ + Sbjct: 173 TGKLRDAYKRNAEMGSSDAYSLWQEVQ-RELIAFAIQISGLTDADMQRLRTLELGSHVAL 231 Query: 220 LLAGFCSLADWLGSWTTTNTF-LF------NEDAPSDINALRTYFQDRQQDA--SRVLEL 270 ++ G +ADW+ S + F LF + APS+ LR + A + + Sbjct: 232 IITGMVIMADWIASNSDAGMFPLFPARASAEKSAPSEFRELRERGERGWSTAKLTPAWQA 291 Query: 271 SGLVSNKRCYEGVHALLDNGYQPRQLQV---------LVDALPVAPGLTVIEAPTGSGKT 321 S L H P+Q Q+ L +A+ PG+ ++EAP G GKT Sbjct: 292 SALEDLDNAQAVQHWFQQRFNMPQQAQMRPMQKKVVELCNAVE-QPGIMIVEAPMGEGKT 350 Query: 322 ETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPN--LILAHGNSRF 379 E AL A L + A V ALPT AT + M TR+ + L S + + L+HG + Sbjct: 351 EAALMAAEILAAKTQAGGVCVALPTMATTDPMFTRVHSWLDALPSDTDKSVWLSHGKATR 410 Query: 380 NHLFQSIKSRAIT------EQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLP 433 N F+ + +++ + E ++ WL KK L +CT+D VL+ L Sbjct: 411 NREFRGLIAQSKSMASVYDETAPRKSNTMVADWL-WGRKKGPLANFLICTVDHVLMGALQ 469 Query: 434 VKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQK 493 +KH +R L + +++VDE HAYD YM LE VL + V+LLSATLP ++ Sbjct: 470 MKHVALRDLALANKIVVVDECHAYDRYMQQYLECVLTWLGGLQVPVVLLSATLPPALREA 529 Query: 494 LLDTY--------------------------------------GLHTDPVENNSAYPLIN 515 LD Y G T+ ++ AYPLI+ Sbjct: 530 YLDAYMRGRKAEHAWEYQMNHAQLRTGSIRGRKKRQHPPESMGGSETEETDSRIAYPLIS 589 Query: 516 WRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICN 575 + +G + H P S + D + +L L + G ++C+ Sbjct: 590 Y--TDGMH----IHHAAVAPSGRSQTVRFNAMGDDIEELCAL--LQDKLREGGCAAVVCD 641 Query: 576 LVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFG-----KNGKRNVGR 630 V AQ Y+ L++ ++ L HARFT +DRR KE +++ G +NGKR Sbjct: 642 TVGRAQKVYEALQD-QYAADEVMLLHARFTDDDRRSKEEQLLHMLGNAATLENGKRPHCL 700 Query: 631 ILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIP 681 I+V TQV+EQSLD+D D +I+ P DL+ QR+GR+HRH R RP IP Sbjct: 701 IVVGTQVLEQSLDIDVDLMISDIAPVDLIMQRVGRMHRHERSQRPPRVAIP 751 >UniRef50_A7BA68 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BA68_9ACTO Length = 961 Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 215/790 (27%), Positives = 340/790 (43%), Gaps = 90/790 (11%) Query: 10 YWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAW--L 67 +W KS S G+ + + + H +D A VA +D + + + R KA Sbjct: 5 FWAKSGDS---GSWLSV-VQHLMDAADVAGLLFDDYLSEHHRRLMASVWGGDRAKARASF 60 Query: 68 LFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKF-NHGAAGLYWFNQDS 126 +F +HD GK +F + + + + + R F HG + ++ Sbjct: 61 VFLAGVHDAGKVSPQFACQRQDLAQLIRSEGLVVMRKADYAERSFLPHGLVSQFALQEEI 120 Query: 127 LSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHG--------FILHSQ--DQDKSRWEM 176 + G W V HHG ++ Q Q+ SR + Sbjct: 121 AAGGGDG-------------SRALQWAILVGVHHGRYPDAGAVYVARQQYKTQEGSREDD 167 Query: 177 PASLASYAAQDKQAREE---WISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGS 233 P + Q R E W++ L G ++ ++P +S A +ADWL S Sbjct: 168 P--------RWGQVRSEILRWMAARSGFPLVAPGTALPELPIAVASAYASALVIADWLAS 219 Query: 234 ---WTTTNTFLFNEDAPSDINALRTYFQDRQQDASR----------VLELSGLVSNKRCY 280 + +E I+ D+Q+D R L +S S++ Sbjct: 220 NEDYFPLRPRPVDEAGKLSIDGYPELTADQQRDRVRRAWKRAAFPTPLRISTTPSDEVTD 279 Query: 281 EGVHAL-LDNGYQPRQLQVLVDALPVA--PGLTVIEAPTGSGKTETALAYAWKLIDQQIA 337 H + Y+P + Q + P L ++EAP GSGKTE A A A L+ + Sbjct: 280 FYRHRFGWPDTYRPTEAQRAAIEIATGEDPDLMIVEAPPGSGKTELAFAAAEVLMRARGL 339 Query: 338 DSVIFALPTQATANAMLTRMEA-SASHLFSSPNLI---LAHGNSRFNHLFQSIKSRAIT- 392 V ALPTQAT NAM R+ A S L P + LAHG + N F + +R + Sbjct: 340 QGVFVALPTQATTNAMFERVTAWLTSILGDEPQKLGIQLAHGRNSLNESFVKLLARGKSP 399 Query: 393 ---EQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVL 449 +E+ + +W+ Q + L + V TIDQVL++ L +H +R +G+ V+ Sbjct: 400 LEVHDDEEDLGLYASRWMGQRWRST-LSPVVVGTIDQVLLAALKSRHVLVRHIGLMGKVV 458 Query: 450 IVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTY-------GLHT 502 ++DEVHA D YM LEA L G V+LLSATLP ++ LL+ Y G+ Sbjct: 459 VIDEVHAADEYMETYLEAALTWLGMYGIPVVLLSATLPPARRLALLNAYRRGCGSSGVSA 518 Query: 503 DPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIA 562 + V+ YP I+ G + +++ E +P R P L +L+R +A Sbjct: 519 ESVDVMIGYPAISTVSAAGVRVHEVVGEAE-VPKRII----PTSLGSPQEIAELLDRELA 573 Query: 563 AANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGK 622 G +I N V AQ Y+ ++ + + L H+RF +R ++ R++ FGK Sbjct: 574 D---GGCAVVIRNTVRDAQETYEAVRSVFGREQST-LLHSRFLAVERAARDRRMLELFGK 629 Query: 623 NGKRNVGR-ILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIP 681 + ++ R ++VATQV+EQSLDVDFD ++T P DL+ QR+GRLHRH R RP+G Sbjct: 630 DSQQRPFRHVVVATQVIEQSLDVDFDLMLTDPAPMDLVLQRIGRLHRHERDGRPSGLHDA 689 Query: 682 VATILLPDGEG----YGR-HEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIY- 735 +++ D Y R +++Y+ V+ RT I + + P Y + Y Sbjct: 690 RCLVIIDDTTSSPWTYSRGTDYVYARYAVL-RTLAIIADREEILVREPLEYEELTTQAYA 748 Query: 736 DDAEMDEPEW 745 DD + +W Sbjct: 749 DDVPVGPAQW 758 >UniRef50_B6WQ58 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WQ58_9DELT Length = 654 Score = 212 bits (540), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 158/472 (33%), Positives = 227/472 (48%), Gaps = 41/472 (8%) Query: 221 LAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCY 280 +AG +LADWLGS + F D D ++LR Q A + +E GL Sbjct: 5 VAGLVTLADWLGS----DEHFFPPDTLLDEDSLR-------QRAGKAVETIGLGLPPVVQ 53 Query: 281 EGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSV 340 A + +G P LQ A PG+ VIEAP G GKTE AL A+ L+ + AD + Sbjct: 54 GLDFAKIFSGRAPYPLQAEAAAAIDRPGIHVIEAPMGMGKTEAALWAAYHLLSRGQADGI 113 Query: 341 IFALPTQATANAMLTRMEASASHLFSSPNLI---LAHGNSRFNHLFQSIKSRAITEQGQE 397 FALPTQAT+N M R + P + L HGNS +++ A + Sbjct: 114 FFALPTQATSNRMFLRFADFVRRV--CPQAVPAQLIHGNSWLQDELKALVCPATPGIEAD 171 Query: 398 EAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAY 457 W + ++ GV T+DQ L++VL VKH +R + V+++DEVH Y Sbjct: 172 PCWFN-------TTRRSLFAPFGVGTVDQALLAVLAVKHFALRRFALAGKVVVIDEVHTY 224 Query: 458 DTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWR 517 D Y L+ + + +G +VI+LSATL + + LL L + YP I+ R Sbjct: 225 DMYTGTLVRYLCRELEQLGCTVIILSATLTEEARCSLLS---LPAGEEGRDIPYPRISGR 281 Query: 518 GVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLV 577 + D+L PE+ PP P+ + L + + A GAQ+ +CN V Sbjct: 282 AAS-----DVL--PERCPPSL---PDKVVHVMHPGRGEALAQAVELAGQGAQILWVCNTV 331 Query: 578 DVAQVCYQRLKELNNTQ---VDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVA 634 AQ + L++ T+ D+ L H+RF R E ++ G G+R G ILV+ Sbjct: 332 ARAQEDFMELRQRAATRDGGPDVGLLHSRFPFYRREFLEREWMARLGPEGERTKGSILVS 391 Query: 635 TQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATIL 686 TQ+VEQS+D+D D L ++ P D+L QRLGRL RH R RP E P+ +L Sbjct: 392 TQIVEQSVDLDADVLFSELAPTDMLLQRLGRLWRHPRDGRP--VEAPLFCLL 441 >UniRef50_C7LYX0 CRISPR-associated helicase Cas3 n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LYX0_ACIFD Length = 922 Score = 212 bits (539), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 236/808 (29%), Positives = 337/808 (41%), Gaps = 85/808 (10%) Query: 11 WGKSSKSLTKGNDI--HLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQ-RVKAWL 67 W K+S++ T+ H L H +D A VA W + E L + +A Sbjct: 22 WAKTSRAPTEPPTYRWHPLAAHLVDAALVAQQLWAGWLSPSTKRWLGEPLGGEDHARALF 81 Query: 68 LFFIALHDIGKFDIRFQYKSAESWL--KLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQD 125 HD+GK FQ + WL +L A +++ P Q K H A Sbjct: 82 ALLAGCHDLGKATPAFQIQV--DWLHPQLRDAGLAVDKPLPQRS-KAPHALA-------S 131 Query: 126 SLSEQSLGDFFSFFDAAPHPYESWFPWVEAV-TGHHGFI--LHSQDQDKSRWEMPASLAS 182 + + Q L + + A V A+ GHHG+ L + + R E+ Sbjct: 132 AATVQPLLAARGWSEPA-------IRGVAAILGGHHGWFPPLGYEREPIKRPEL------ 178 Query: 183 YAAQDKQ---AREEWISVLEALF---LTPAGL-------SINDIPPDCSSLLAGFCSLAD 229 Y + A + W + E LF + AG ++ LAGF LAD Sbjct: 179 YGLAGRPLGGAGDPWSAARERLFDLVVEVAGAQQVLGLAGTTELGSARRLALAGFVILAD 238 Query: 230 WLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGL--VSNKRCYEGVHALL 287 W+ S +L P D Y QQ A+ L G V+N G A Sbjct: 239 WIASNEQLFPYLC---LPYD----DAYLHAAQQRAAEALVQLGWHGVANLGAVVGAPAFE 291 Query: 288 DN-GYQPRQLQ--VLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFAL 344 G+ P LQ L GL +IEAP G GKTE ALA A L +Q L Sbjct: 292 HRFGFSPNALQRQTLEAVEQGDGGLVLIEAPMGMGKTEAALAAAEVLATRQGHGGAFIGL 351 Query: 345 PTQATANAMLTRMEASASHLFSSPNLI-LAHGNSR----FNHLFQSIKSRAITEQGQEEA 399 PTQAT+N M R L ++ LAHG ++ F L ++ A+ + A Sbjct: 352 PTQATSNQMFHRTRRWLEQLGPGTFVLELAHGRAQQVPAFRDLLENGAPSAVDVDEGDIA 411 Query: 400 WVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDT 459 V W + K+ L V TIDQ+L+ V+H +R +G+ V+I+DEVHAYD Sbjct: 412 RVTAEAWFT-GPKRRLLAPFVVGTIDQILLGTAKVRHVALRHVGLAGKVVILDEVHAYDA 470 Query: 460 YMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGV 519 YM+ L VL+ VILLSATLP + +L++ Y H+ P+ YP I Sbjct: 471 YMSVFLRRVLEWLGAERIPVILLSATLPPAVRARLIEAYAGHSTPL-GLVGYPSITTVST 529 Query: 520 NGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPD------LTMLERMIAAANAGAQVCLI 573 +G H P + L + D + +LE + A AGA + +I Sbjct: 530 DG--------HVTTTPVATDASSVTVRLEHLDEDPEDESSMPLLEMVAQMAEAGANILVI 581 Query: 574 CNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILV 633 N V AQ Y+ + E + L HARFT DR KE+ + +FG+ G R G+++V Sbjct: 582 RNTVARAQRTYRAVAE-RRPMGTVHLLHARFTTADRLRKESWLAEHFGRGGTRLSGQVVV 640 Query: 634 ATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGY 693 TQV+EQSLD+DFD L T P DL+ QR+GR+HRH RP GF P + Sbjct: 641 GTQVLEQSLDIDFDVLATDLAPVDLVLQRIGRVHRHRGTRRPVGFTEPRVIVTGFTRSPT 700 Query: 694 GRHEHIYSNVRVMWRTQQHIEELNGA---SLFFPDAYRQWLDSIYDDAEMDEPEWVGNGM 750 G +VRV SL PD + ++Y D ++ P W +G Sbjct: 701 GPPAFPSGSVRVYGEHLLLRTAALLLARDSLTLPDDVPSLVAAVYGDDDVIAPAWHDHGA 760 Query: 751 DKFESAECEKRFKARKVLQWAEEYSLQD 778 + E+ + R+ AE++ + D Sbjct: 761 RVAVEWQSEQHERERR----AEQFVISD 784 >UniRef50_B8IZA2 CRISPR-associated helicase Cas3 n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8IZA2_DESDA Length = 860 Score = 211 bits (536), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 192/643 (29%), Positives = 295/643 (45%), Gaps = 80/643 (12%) Query: 61 QRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLY 120 Q + A + F +++HD+GK +FQ K WL+ N + R+ + A + Sbjct: 44 QDLHAVVAFLLSIHDVGKISPQFQGKCL-LWLEQN-----------GLAREAANNAWPSF 91 Query: 121 WFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASL 180 LS++ L D+F + ES+ W V HHG ++ + P L Sbjct: 92 TTTHACLSQEIL-DYF--WQQKGLLSESYSLWSAIVGAHHGKWAKAKPHHYGQVS-PPCL 147 Query: 181 ASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLA--GFCSLADWLGSWTTTN 238 A + D REE ++ + + A + + +SL A G LADW+ S Sbjct: 148 APSPSVD-WLREE-LNFVAYQWEQHANTELPPVTGASASLYASAGLLVLADWIAS----- 200 Query: 239 TFLFNEDAPSDINALRTYFQDRQQD--ASRVLELSGLVS----NKRCYEGVHALLDNGYQ 292 ++ N D Q D A V+ G S +E + G Sbjct: 201 -----DEHHFPANPTLAPIADEQIDRVAHDVVGSLGFASLEIRTGLSFEDIF-----GCS 250 Query: 293 PRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANA 352 P +QV PG+ VIEAP G GKTE AL A+KL++Q A + F LPTQAT+N Sbjct: 251 PYPMQVAAWCNITEPGIYVIEAPMGMGKTEAALMAAYKLMEQGKARGLYFGLPTQATSNR 310 Query: 353 MLTRMEASASHLFSSPNLI-LAHGNSRFNHLFQSIKSRAITEQGQ----------EEAWV 401 + R+ + + + L HGNS + A+ EQ Q + Sbjct: 311 IYERVLEFILRISPTAQRVQLIHGNSWLLD-----DTLAMPEQQQLPDDSAADPKAGSGA 365 Query: 402 QCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYM 461 +W S+++ L +GV T DQ +++ L VKH +R L + V+I+DEVH+YD Y Sbjct: 366 DPLRWFC-SSRRALLAPVGVGTADQAMLAALAVKHFALRRLALLGKVVILDEVHSYDHYT 424 Query: 462 NGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPV------ENNSAYPLIN 515 +++ + + AD+G +VI+LSATL + LL ++ PV E++ YP I+ Sbjct: 425 RAIIQQLCRVLADLGSTVIILSATLSGSARSALLQSHS----PVSSMGAEEDSLPYPCIS 480 Query: 516 WRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICN 575 R + + + P PP ++ D P + R I A +G QV +CN Sbjct: 481 GRAHD---QDTVQVIPCTPPPSHTVH------VDFQPLQGAISRTIDIAASGGQVLWVCN 531 Query: 576 LVDVAQVCYQRLKE---LNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRIL 632 V AQ ++ ++ + + Q D+ + HAR R E+E + GK G+R G IL Sbjct: 532 TVANAQETFRNIQAHAAVTDCQADMGILHARLPFFMREERETEWMQRLGKKGQRQRGCIL 591 Query: 633 VATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRP 675 V+TQ+VEQS+D+D D L T+ P D+L QR+GRL RH R+ RP Sbjct: 592 VSTQIVEQSVDLDADVLFTELAPTDMLLQRMGRLWRHTRRDRP 634 >UniRef50_Q2RXK0 CRISPR-associated helicase, Cas3 family n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RXK0_RHORT Length = 885 Score = 211 bits (536), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 228/812 (28%), Positives = 334/812 (41%), Gaps = 147/812 (18%) Query: 11 WGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVK----AW 66 WGKS + + H L +HC DVAA ++ L R E + + A Sbjct: 32 WGKS-----RDGESHHLAHHCADVAAC----FEAMAALPGVRSRLERAAGGPLSEVDIAR 82 Query: 67 LLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAG--LYWFNQ 124 L + LHDIGK FQ K+ L P +G + F H A + + Sbjct: 83 LAVLVFLHDIGKLHPGFQAKAWPEGLWTGPR----HGHMREGVEIFQHQAPPDIVRSLHL 138 Query: 125 DSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYA 184 + L E + D+ F +V HHG + + W ++A Sbjct: 139 EKLIEWGV-DWNLLF---------------SVLAHHGRPVSMEGGRPPCWR---AVAKAG 179 Query: 185 AQDKQAREEWISVLEALFLTPAGLSINDIPP-----DCSSLLAGFCSLADWLGSWTTTNT 239 A E ++ F AG + D P + L GF SLADWLGS T Sbjct: 180 YDPGAASAEVGGLIPRWF---AGAFVQDGRPLPSMVGFAHLFCGFVSLADWLGS--TRAV 234 Query: 240 FLFNEDAPSDINALRTYFQDRQQDASRVLELSGL----VSNKRCYEGVHALLDNGYQPRQ 295 F F + D Y + ++ A + GL + K A L PR Sbjct: 235 FPFKAELDVD------YMEKARKKAGAAVAAIGLDPRALQRKAAGRADFATLTGIDTPRP 288 Query: 296 LQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLT 355 Q LV A P+A L ++EA TGSGKTE AL L DS+ FALPT+A A + Sbjct: 289 QQQLVGAFPLAEPLVILEAETGSGKTEAALWRFVLLFAAGKVDSLYFALPTRAAAIQLHA 348 Query: 356 RMEASASHLFSS--PNLILA-----HGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLS 408 R+ + + +F + P +LA H R + G +E+ + +W + Sbjct: 349 RVNKAMARVFGADAPEAVLAVPGYLKSGVVGGHALPDWGVRWDDDGGLDESRL-LARWAA 407 Query: 409 QSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAV 468 +S K+ I V T+DQ +++ L VKH +RG + RS+L++DEVHA D YM + + Sbjct: 408 ESAKRHLAATIAVGTVDQAMLAALQVKHAHLRGAALSRSLLVIDEVHASDRYMVEVQTHL 467 Query: 469 LKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSA---YPLINWRGVNGAQRF 525 L GG +L+SATL + K L G T P + YP + +G Sbjct: 468 LAMHLGHGGQAMLMSATLGSLARTKWL---GRKTSPSFEEAVATPYPAVWGKG------- 517 Query: 526 DLLAHPEQLPPRFSIQP--EPICLADMLPDL---TMLERMIAAANAGAQVCLICNLVDVA 580 ++ PR I E ++P T I AA +GA+V ++ N V A Sbjct: 518 -------EVAPRGGIGKGGEKSVAIGLVPSWTAETAAALAIDAARSGARVLVVRNTVRAA 570 Query: 581 QVCYQRLKELNNTQVDID------LFHARFTLNDRREKENRVISNFG--KNGKRNVGRIL 632 + R+++ + + L H RF DR + V + + + GRI+ Sbjct: 571 ISTFDRVRQAGGEDLLLTVAKGPALHHGRFAPEDRALLDGAVEAALSVDQATRTPGGRIV 630 Query: 633 VATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEG 692 + TQ +EQSLD+D D+LIT CP D+L QR+GRLHRH RP+GFE+P +L+P+ Sbjct: 631 IGTQTLEQSLDIDADFLITDLCPVDVLLQRIGRLHRHALS-RPSGFEVPHCRVLMPE--- 686 Query: 693 YGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAY---------RQWLDSIYDDAEMDE- 742 G +F P + R L+ IY D + E Sbjct: 687 ------------------------QGLEIFLPPFFENGLGGWDERGVLNGIYRDLSVLEL 722 Query: 743 --------PEWVGNGMDKF--ESAECEKRFKA 764 PEW M++F ESA +R +A Sbjct: 723 TRRLIAAYPEWRIPAMNRFLVESATHPERIEA 754 >UniRef50_C0VRV9 CRISPR-associated helicase Cas3 family protein protein n=1 Tax=Corynebacterium glucuronolyticum ATCC 51867 RepID=C0VRV9_9CORY Length = 945 Score = 209 bits (532), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 206/704 (29%), Positives = 311/704 (44%), Gaps = 87/704 (12%) Query: 7 ICHYWGKSSKSLT-KGNDIHLLIYHCLDVAAVADCWWDQSVVLQN-TFCRNEM-LSKQRV 63 I +W K+ + T K D + H +D A VAD W+ + Q F R E +++Q + Sbjct: 23 IRSFWAKTPEDSTDKSGDFLSVPQHLVDAACVADELWETWLSNQTRAFLRRETSMTEQAL 82 Query: 64 KAWLLFFIALHDIGKFDIRFQYKSAESW------LKLNPATPSLNGPSTQMCRKFNHGAA 117 ++ + F + HDIGK FQ + ++ A SL P T+ + Sbjct: 83 RSLVTFVVGTHDIGKISCTFQSQLDSRGDMGMYSQRVEDAGFSLVAPKTE---------S 133 Query: 118 GLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMP 177 ++ S SE L D+ P + A HHG K+ M Sbjct: 134 AFEYYPHSSASEAILFDWL-LNHKVSRPVGLSIASIAA--AHHGVPSTKPGVAKAARAM- 189 Query: 178 ASLASYAAQDKQAREEWISVLEAL--FLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWT 235 A Y+A K A +E + + L F + + ++ GF + DW+ S Sbjct: 190 ---AKYSAGWKAAHKEILDKIAELTGFNEVLQQITKPLTTPATQIITGFVIMCDWIAS-- 244 Query: 236 TTNTFLFNEDAPSDINALRTYFQ-DRQQDASRVLELSGLVSNKRCYEGVHALLD------ 288 F N+ T+ Q DR + +ELS S + V A D Sbjct: 245 NQMAFPLND----------THSQEDRVRRGVDSIELSSPWSPQ-----VRAPQDATYFSS 289 Query: 289 -----NGYQPRQLQ---VLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSV 340 + Y+ R +Q V + P L +IEA TG GKTE LA A L + + Sbjct: 290 AFNWPDSYKIRPIQQAAVDIARAQKEPTLLIIEAATGEGKTEAGLAAAHVLAAHAGSQGI 349 Query: 341 IFALPTQATANAMLTRMEASASHLFSSP-----NLILAHGNSRFNHLFQSIKSRAITEQG 395 +FA PT +TA+ + R+ A + ++P + L H S N F ++ +I ++ Sbjct: 350 VFAAPTMSTADGLFNRVTDWA--MRTTPESEVSTMFLGHSKSSLNRDFTKLRFGSIGDR- 406 Query: 396 QEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVH 455 E V +WL+ K+ L VCT+DQVL+ L +H +R LG V+I+DE H Sbjct: 407 HEFGTVTATRWLA-GRKRGILSNFVVCTVDQVLMLALQARHLMLRHLGFSGKVVIIDEAH 465 Query: 456 AYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTY--GLHTDPVE-NNSAYP 512 +YD YMN L ++ A G SVI++SATLP Q+Q L Y GL+ + +SAYP Sbjct: 466 SYDVYMNEYLAVAIQWLARYGCSVIIMSATLPTSQRQALASAYAKGLNVEKATVRSSAYP 525 Query: 513 LINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLT-MLERMIAAANAGAQVC 571 L+ G + + PE +S++ LAD + +LE + G Sbjct: 526 LLTIVDKQGGREQPVETRPES--KHYSVEK----LADDGEAVAGLLEDKL---REGGVAL 576 Query: 572 LICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGR- 630 ++CN V AQ + +L +V +L HA F + R KE + G + R GR Sbjct: 577 VVCNTVRRAQEAFDKLSARFPGEV--ELHHAAFMASHRARKEEELRRKLGPHAHRGNGRP 634 Query: 631 ---ILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHR 671 ++VATQV EQSLD+D D L+T P DLL QR+GR++RH+R Sbjct: 635 DRLVVVATQVAEQSLDIDADLLVTDIAPMDLLIQRIGRVYRHNR 678 >UniRef50_B1VIY4 CRISPR-associated protein n=4 Tax=Corynebacterium RepID=B1VIY4_CORU7 Length = 941 Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 144/388 (37%), Positives = 206/388 (53%), Gaps = 28/388 (7%) Query: 307 PGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRME--ASASHL 364 P L ++EA TG GKTE ALA A +L + V FA PT ATAN +L R A + Sbjct: 322 PALYILEAETGVGKTEAALAAAHQLGAEDGVQGVYFAAPTMATANGLLDRTINWAQGTTG 381 Query: 365 FSSPNLILAHGNSRFNHLFQSIKSRAITEQ--GQEEAWVQCCQWLSQSNKKVFLGQIGVC 422 + +L LAH ++ ++++K + I E G V QW+S ++ L I V Sbjct: 382 DTVASLYLAHSKNQLAEPYRALKYKGIAEDEAGGAAGKVVASQWMS-GRRRGLLSNIVVG 440 Query: 423 TIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILL 482 T+DQVL+ L ++ +R L + V+I DEVH+YD Y + L+ L A G SVI++ Sbjct: 441 TVDQVLMLALVQRYSMLRHLALAGKVIIFDEVHSYDAYTSDYLKTTLSWLAYYGASVIVM 500 Query: 483 SATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRF--SI 540 +ATLP +Q+++L + Y VE +SAYP I + D + PE P S+ Sbjct: 501 TATLPTRQREELAEAYSGEPLRVE-SSAYPRITVV----TEEKDEVWEPEPSPRNLDASL 555 Query: 541 QPEPICLADMLPDL-TMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDL 599 Q + D L +L +L++++A G +ICN + AQ YQ L E +V +L Sbjct: 556 Q----VIGDELVELRALLDQLLA---EGGCALVICNTIARAQQAYQELAEAYPDEV--EL 606 Query: 600 FHARFTLNDRREKENRVISNFGKNGKRNVGR----ILVATQVVEQSLDVDFDWLITQHCP 655 HA F +R ++E+R+ G +R GR I+VATQV EQSLD+D D LIT P Sbjct: 607 HHAGFMAWERSQREDRLREELGPAARRGAGRPARKIVVATQVAEQSLDIDADVLITDLAP 666 Query: 656 ADLLFQRLGRLHRHHRKY--RPAGFEIP 681 DL+ QR+GR+HRH R RPA P Sbjct: 667 MDLVIQRIGRIHRHQRPTSDRPAALREP 694 >UniRef50_UPI0001A42D32 hypothetical protein PcarcW_06344 n=1 Tax=Pectobacterium carotovorum subsp. carotovorum WPP14 RepID=UPI0001A42D32 Length = 565 Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 168/516 (32%), Positives = 241/516 (46%), Gaps = 66/516 (12%) Query: 10 YWGKSSKSLT--KGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWL 67 YWGK+ ++ +G+D HLL YH LDVAA + N R + V AW Sbjct: 14 YWGKAKRAADALEGDDYHLLPYHGLDVAACGYFLLKGNYFQANHVLRELVFGDDDVAAWF 73 Query: 68 LFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLY-WFNQDS 126 +F+A HDIGKF FQ K A NP +P + + K H G + W +D Sbjct: 74 AYFLAWHDIGKFARGFQSKYA------NPDSPLVQ--HSGQSGKDRHDDLGFWLWTMRDD 125 Query: 127 LSEQSLGDFFSFFDAAPHPY--ESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYA 184 + + F P + W+ VTGHHG K E SLA + Sbjct: 126 IP-----NLFPLGTKKPTSVVKNTLEIWLNIVTGHHG---------KPAAECKGSLA-FH 170 Query: 185 AQDKQAREEWISVLEALFLTPAGLSINDIPPDC-------------SSLLAGFCSLADWL 231 D A E ++ LE F + P C S LAG LADWL Sbjct: 171 RDDYLAVEHYLHDLETCFPDASAF------PACFADKGWRNRLKQQSWALAGLTVLADWL 224 Query: 232 GSWTTTNTFLFNEDAPSDINALRTYFQDRQ-QDASRVLELSGLVSNKRCYEGVHALLDNG 290 GS + S L TY+++ A +V+ + + + L Sbjct: 225 GSRQQDFRYC------STPMPLETYWREHALPTAEKVVSRLPRTPSPVPFHSIQQLFPFI 278 Query: 291 YQPRQLQ---VLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQ 347 +P LQ + D P L ++E TG+GKTE A+ A +L+ QQ A + LPT Sbjct: 279 QRPTPLQQQALEADISADGPQLFILEDVTGAGKTEAAMVLAHRLMAQQKASGIYVGLPTM 338 Query: 348 ATANAMLTRMEASASHLFS---SPNLILAHGNSRFNHLF-QSI-----KSRAITEQGQEE 398 ATANAM R+ + L+S SP+L+LAHG + F QS+ + +A ++ + Sbjct: 339 ATANAMYLRLAKAYHALYSPEHSPSLMLAHGARHMSSAFMQSLWEGDSQGQAQYDKKENA 398 Query: 399 AWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYD 458 A C W + S KK L IGV T+DQ L++V+P +++ +R LG+ +LI+DEVHAYD Sbjct: 399 ASKDCNIWFADSRKKALLADIGVGTLDQALMAVMPFRYQSLRVLGLQNKLLILDEVHAYD 458 Query: 459 TYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKL 494 YM+ L+E ++ A GGSVI+L+ATLP+ ++KL Sbjct: 459 AYMSKLIELLIGFHAQQGGSVIILTATLPLNLREKL 494 >UniRef50_C9M9R3 CRISPR-associated helicase Cas3, core n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M9R3_9BACT Length = 909 Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 184/605 (30%), Positives = 272/605 (44%), Gaps = 85/605 (14%) Query: 147 ESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPA 206 +S F W+ + HHG S+++ + W + A A + A EE ++ F P Sbjct: 129 DSVFLWI--LLSHHGRT-PSREKLRLHWPLLWPDARKDAPEWTALEELRQSVKRWF--PK 183 Query: 207 GLSINDIPPDCSSL---LAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQD---- 259 ++ P L AG LADW+GS T F E D R D Sbjct: 184 AWGTDERMPQAPLLGHFFAGVLMLADWIGS---TEYFFPYEGC--DGRLPRGCGCDPITW 238 Query: 260 RQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALP--VAPGLTVIEAPTG 317 + A R L GL + L G+ P +LQ +D+LP V GL IEAPTG Sbjct: 239 SRSAARRALRQIGL-DRSEIFSHKEFLDQFGFLPNELQKAIDSLPLSVDGGLYSIEAPTG 297 Query: 318 SGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRM--------EASASHLFSSPN 369 GKTE AL +L D + D + FA P + A+ + R+ +A+ + + P Sbjct: 298 CGKTEAALRLFSRLFDAGLVDGLYFANPNRLAASQLYDRLWAFDKKAFQAALPTVLAVPG 357 Query: 370 LILAHGNSRFNHLFQSIKSRAI----------TEQGQEEAWVQCCQWLSQSNKKVFLGQI 419 I+A G +K RA+ +Q +E+ +W ++ K+ + Sbjct: 358 YIMADG----------VKGRALDNLEVAWPDFEDQAKEKGACLGRRWAAERPKRFLTSPL 407 Query: 420 GVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSV 479 V TIDQ L+S + V+H +R I RS+L++DEVHA D+YM L ++L+ ++GG V Sbjct: 408 AVGTIDQALLSTVRVRHCHLRAAAIQRSLLVIDEVHASDSYMTRLTSSLLEWFKNLGGHV 467 Query: 480 ILLSATLPMKQKQKLLDTYGLHTDPVENN-----------------SAYPLINWRGVNGA 522 +L+SATL +++ +G + + + YPLI+ + Sbjct: 468 LLMSATLTEALREQYFSQWGGLRQSIRFSKSLSEKKAEKKAEKKVPAGYPLIS--SLVDR 525 Query: 523 QRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLIC--NLVDVA 580 QR D + S+ P C+ D+ + + +A + C++ N V A Sbjct: 526 QRSDTVVPLTAQDKNVSLTLWP-CMTDINKTARRVAELWRSAPENEKPCILVLRNTVAQA 584 Query: 581 QVCYQRL------KELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGK--------R 626 Q Q L K L Q + L H RF DR+ + V FGK+ + R Sbjct: 585 QKTAQELSKLLPEKALFQVQGVLTLHHGRFASPDRKVLDETVERYFGKDTEKGAPAESDR 644 Query: 627 NVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATIL 686 G +LVATQ VEQSLDVDFD+L+ CP D+L QR+GRL RHHR RPAGF P +L Sbjct: 645 RDGVVLVATQTVEQSLDVDFDYLVVDLCPGDVLLQRIGRLFRHHRP-RPAGFCEPQCVLL 703 Query: 687 LPDGE 691 +P E Sbjct: 704 VPSDE 708 >UniRef50_B6IWM7 CRISPR-associated helicase Cas3, putative n=1 Tax=Rhodospirillum centenum SW RepID=B6IWM7_RHOCS Length = 961 Score = 203 bits (517), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 201/694 (28%), Positives = 290/694 (41%), Gaps = 94/694 (13%) Query: 11 WGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFF 70 WGK+ L HLL++H LDVAAV D +++ L L + +A LL Sbjct: 17 WGKARSGL------HLLVFHLLDVAAVLDAGFERRPALLARLADGLGLDRDAARAMLLTV 70 Query: 71 IALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQ 130 +ALHDIGK FQ E+ L A + Q + +H A G + + Sbjct: 71 LALHDIGKVATGFQASDREAAGALGLAL------AGQERMREHHSAVGQALLLRLLTRHR 124 Query: 131 SLGDFFSFFDAAPHPYESWFPWVEAV----TGHHGFILHSQDQDKSRWEMPASLASYAAQ 186 + P + P +EA+ TGHHG + + E + Sbjct: 125 AGSGL-------PDGGAAALPVMEALFALSTGHHGRPVLGLPKVSLLMET----GALTDD 173 Query: 187 DKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDA 246 D + + LF G+ + S LL G +L DWLGS + + Sbjct: 174 DMDIAATLVRAVAGLFGWRQGIPDREGLTRLSPLLNGLFTLCDWLGS----SDHFACRNQ 229 Query: 247 PSDINALRTYFQD-------RQQDASRVLELSGLVSNKRCYEGVHALLDNGYQ------P 293 P + LR Y++ R D R L R G AL + P Sbjct: 230 PQE---LRAYYEGTALPTARRMLDTIRPTPFGRL--TPRPPAGFAALFPRLGRDGAPAVP 284 Query: 294 RQLQVLVD------ALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQ 347 LQ L D ALP P LT+IE G+GKTE +LI AD LPT Sbjct: 285 TPLQALADRLFTADALPDGPLLTIIEDLPGAGKTEAGDLITHRLIALDRADGAYVGLPTM 344 Query: 348 ATANAMLTR-------MEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAW 400 ATA+A R ++ A+ P ++LAH + +RA E+G+ A Sbjct: 345 ATADAAFARRFDRDGGLDFGAALFTEVPQVVLAHSRRHRTPGYAVTPTRAGLEEGEGYA- 403 Query: 401 VQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTY 460 W ++S+++ L +GV T+DQ L L ++ +R G+ R VL+VDEVHAYD+Y Sbjct: 404 ---LDWFNRSSRRALLTDLGVGTVDQALAGALRARYATVRLAGLWRKVLLVDEVHAYDSY 460 Query: 461 MNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVE--------NNSAYP 512 M LL A+L+ Q +G V+L+SATLP + +Q L+ Y + AYP Sbjct: 461 MQTLLHALLRWQGRMGDPVVLMSATLPARLRQDLIRAYAEGAGWADVAAMAERTRPGAYP 520 Query: 513 LINWRGVNGAQRFDL--LAHPEQLPPRFSIQPEPICLADMLPDLTMLE-RMIAAANAGAQ 569 L+ G + L + P P RF + DL +E R+ G Sbjct: 521 LLTLVSGQGIAQHPLAPVPGPGTRPVRF----------EAAHDLDTVEDRLRGWLAQGRC 570 Query: 570 VCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNG--KRN 627 V N V A ++RL +L+ L+HARF DR E ++ GK+ Sbjct: 571 VLWFRNTVGDAVAAWERLCDLDPL-----LYHARFLPADRSRIEAALLDAVGKDSCPAAR 625 Query: 628 VGRILVATQVVEQSLDVDFDWLITQHCPADLLFQ 661 GR+++ATQ EQSLD+D D ++ PAD + Q Sbjct: 626 RGRLVIATQAAEQSLDLDADEMVIDLAPADAVVQ 659 >UniRef50_B4UE67 CRISPR-associated helicase Cas3 n=3 Tax=Bacteria RepID=B4UE67_ANASK Length = 888 Score = 202 bits (514), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 218/757 (28%), Positives = 328/757 (43%), Gaps = 127/757 (16%) Query: 11 WGKSSKSLTKGNDI---HLLIYHCLDVAAVADCWWDQSVV---LQNTFCRNEMLSKQRVK 64 WGK + T G+ + H L+ HC DVAA + +V+ L ++ + QR + Sbjct: 9 WGKLRR--TPGSPVERWHPLVAHCADVAACLEALLADAVIRSRLARLAGLRDLEAPQRAR 66 Query: 65 AWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQ 124 L ALHD G KFNHG + + Sbjct: 67 --LCILAALHDAG---------------------------------KFNHG-----FQRK 86 Query: 125 DSLSEQSL----GDFFSFFDAAPHPYESWF----------PW-----VEAVTGHHGFILH 165 +L+ + G+ F A P P + W + A HHG + Sbjct: 87 GALAPADVAGHVGELFGAL-AVPSPERAALVAALGLREIDAWGASRLLVAALAHHGAPEN 145 Query: 166 SQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLT-----PA----GLSINDIPPD 216 ++ + P + A +D+ + I+ + AL T PA D PP Sbjct: 146 VRNPSRP----PRAALWRATEDR----DPIAGIAALATTARSWYPAWREPAEPFPDRPP- 196 Query: 217 CSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSN 276 +G +LADW+GS F + D +D + ++R Q R L + + Sbjct: 197 FQHAFSGLVTLADWIGS--DEAAFPYAADPEADRM---PFARERAQQVLRRLWVDPSAAR 251 Query: 277 KRCYEGVHALLD--NGYQPRQLQVLVDALPVAP--GLTVIEAPTGSGKTETALAYAWKLI 332 + A D + +PR Q V L VAP GL+++EA TGSGKTE A+A +L Sbjct: 252 AALRGVMPAFTDLFDVERPRPAQQAVLDLAVAPEGGLSILEAETGSGKTEAAVARFVRLF 311 Query: 333 DQQIADSVIFALPTQATANAMLTRMEASASHLF----SSPNLILA-HGNSRFNHLFQSIK 387 + D + FALPT+ +A + R+ + F P ++LA G R + L Sbjct: 312 AEGRVDGMYFALPTRTSATQIHRRLVDAMRRCFPDERERPPVVLAVPGYLRVDDLVGGRD 371 Query: 388 SR----AITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLG 443 R A+ E+ ++ W + K+ G + V TIDQ+L+S LP+KH +R Sbjct: 372 PRLPPFAVCWPDDEQERMRWRGWAVEHGKRYLAGTVVVGTIDQILLSALPLKHAHLRAAA 431 Query: 444 IGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTD 503 + R L+VDEVHA D YMN LLE VL+ GG +L+SATL +++ + + + Sbjct: 432 LLRHFLVVDEVHASDAYMNRLLETVLERHLAAGGHALLMSATLGAAARERFVRSSADGSL 491 Query: 504 P---VENNSAYPLINWRGVNGAQRFDLLAHPEQLPP---RFSIQPEPICLADMLPDLTML 557 P YP I+ RG G + D P P +I+P PI L + + + Sbjct: 492 PPLAACEEMRYPGISCRGA-GTELADREPRPAGGPADSKPLAIEPVPI-----LDEASAI 545 Query: 558 ERM-IAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLF---------HARFTLN 607 M + AA AG +V +I N V A + L+ ++ LF H+R+ Sbjct: 546 AGMALDAARAGGRVLVIRNTVKGALAVQRDLEARAGSRDRALLFECEGQAAPHHSRYAAP 605 Query: 608 DRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLH 667 DR + + + GK GR++VATQ V+QSLD+D D L+T CPAD+L QR GRLH Sbjct: 606 DRERLDRAIEAALGKRAGAG-GRVVVATQTVQQSLDLDADLLLTDLCPADVLLQRAGRLH 664 Query: 668 RHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVR 704 RH + RPAGFE +L+P G++ + R Sbjct: 665 RHAVRKRPAGFERARVALLVPCDPDLGKYITARGDAR 701 >UniRef50_B4S8Q3 CRISPR-associated helicase Cas3 n=3 Tax=Bacteria RepID=B4S8Q3_PROA2 Length = 860 Score = 202 bits (513), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 161/535 (30%), Positives = 257/535 (48%), Gaps = 65/535 (12%) Query: 221 LAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQD----ASRVLELSGLVSN 276 +AG ++ADW+GS + +F D + ++ +G V Sbjct: 200 IAGLTTVADWIGSGS--------------------FFDDPDEQWLPLIKHAVDSAGFV-Q 238 Query: 277 KRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQI 336 +G+ ++PR++Q L+ PG+ ++EAP G GKTE AL A+ +I Sbjct: 239 PEIIKGLGFSEIFSFRPREIQQLLIEQATQPGVYILEAPMGIGKTEAALYAAYSIIAAGG 298 Query: 337 ADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQ 396 A + FALPTQ T+N + R+ + + P+ I H + H +K + G Sbjct: 299 ATGLYFALPTQLTSNRIHDRVNDFLKKILA-PDCI--HRQALLLHSNAWLKEIEMGADGG 355 Query: 397 EEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHA 456 W + S K+ L V TIDQ L++V+ VKH F+R G+ V+I+DEVH+ Sbjct: 356 PGG-----NWFN-SGKRGILAPFAVGTIDQALMAVMNVKHGFVRTFGLAGKVVILDEVHS 409 Query: 457 YDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINW 516 YD Y +L+ +++A + +VI+LSATL +++ +L PV + S YPLI Sbjct: 410 YDAYTGTILDKLVEALRKLQCTVIILSATLTKERRMNILQ------QPVHDIS-YPLITA 462 Query: 517 RGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNL 576 +G + A +P + + + D+ +E + A G QV I N Sbjct: 463 SQNHGESVIETTA---VVPGKTVVSIQSSSYFDL-----AIEEALTRAEGGQQVLWIENT 514 Query: 577 VDVAQVCYQRLKELN-NTQVDIDLFHARFTLNDRREKENRVISNFGKNG---KRNVGRIL 632 V AQ + L + +++ L H+RF DR E ++ +GK +R GRIL Sbjct: 515 VAEAQNSFSILAARSAGMEIECGLLHSRFIKADRERNEEYWVTRYGKGCDELRRQSGRIL 574 Query: 633 VATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPV--------AT 684 V TQV+EQSLD+D D+L+T+ CP D+L QR+GRL RH +RP G V + Sbjct: 575 VGTQVLEQSLDIDADFLVTKICPTDMLLQRIGRLWRHGDTFRPVGAVCEVLILKPEFHSA 634 Query: 685 ILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAE 739 +L P+ E +G ++YS V+ RT +L A + P+ R +++ Y + E Sbjct: 635 LLNPEKE-FGPTANVYSPY-VLLRTLVVWNDL--ADIVLPEQIRSLIEATYMEIE 685 >UniRef50_C7MTA6 CRISPR-associated helicase Cas3 n=1 Tax=Saccharomonospora viridis DSM 43017 RepID=C7MTA6_SACVD Length = 919 Score = 202 bits (513), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 220/773 (28%), Positives = 333/773 (43%), Gaps = 91/773 (11%) Query: 10 YWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQ--SVVLQNTFCRNEMLSKQRVKAWL 67 +WGK + L + L+ H LD AA W + S ++ L++++ L Sbjct: 8 FWGKE-RGLEGAR--YPLVCHGLDAAAAVRWLWKRYLSARVRAGLAEAVGLTEEQTCRVL 64 Query: 68 LFFIALHDIGKFDIRFQYKSA--ESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQD 125 F+ A HD+GK FQ + E +L P G R+ H A W Sbjct: 65 EFWAAAHDVGKLTPGFQEQVGVPEGYL------PDSTG------RRCRHEEASHIWLP-- 110 Query: 126 SLSEQSLGDFFSFFDAAPHPYESWFPWVEA--VTGHHGFILHSQDQDKSRWEMPASL--- 180 S A H S + A + GHHG + +D R M L Sbjct: 111 -----------SALTAVEHTTNSRNARLIAQMLGGHHG-VFRRRDSADFRPGMFVHLGLG 158 Query: 181 -ASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTT-TN 238 +S+ Q + W ++LE L P LS + +++ G LADWL S Sbjct: 159 DSSWDLQRHAHLQAWRALLEPPTL-PRRLSRH-----AAAVATGVVILADWLVSQIDYVR 212 Query: 239 TFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQV 298 + L + D+ +L + ++ V+ +GL S R G +P +LQ Sbjct: 213 SRLPSLPEQGDLPSLSEFLSGSREATESVVRQAGL-SRLRLRGGTFEEEFGFDEPNELQS 271 Query: 299 LVDA-LPVA---PGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAML 354 + A LP PGL +I APTG GKTE AL A L D + FALPT AT++ M Sbjct: 272 SIAAELPGLLGNPGLLMIAAPTGFGKTEAALHAARLLSDAAGTSGMFFALPTMATSDEMF 331 Query: 355 TRMEASASHLFSSPNLILA----HGNSRFNHLFQSIKSRAITE--QGQEEAWVQCCQWLS 408 R+ A ++ +A HG + L ++++ E +E V +WL Sbjct: 332 NRI---ARYVVRRAETGVAQSLLHGMAWLKPLRETLEQIHAEEGLSSDDETQVHGLEWL- 387 Query: 409 QSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAV 468 Q K+ L +GV TIDQ L++VLPV+H +R + +++DEVHA+ YM LL + Sbjct: 388 QGLKRAMLAPVGVGTIDQALLAVLPVRHNALRLFSLLGKTVVIDEVHAFSPYMRRLLCTL 447 Query: 469 LKAQADVGGSVILLSATLPMKQKQKLLDTY-GLHTD-PVENNSAYPLINWRGVNGAQRFD 526 L + V+LLSATLP +L Y G +T P + YP + + Sbjct: 448 LGWLGEWNVPVVLLSATLPRNIAAELAAAYRGQNTGTPPDVPVPYPGWTYIERESGIKTR 507 Query: 527 LLAHPEQLPPRFSIQPEPICLA-----DMLPDLTMLERMIAAANAGAQVCLICNLVDVAQ 581 + P S+Q P+ +A D LP L + I G ++C V AQ Sbjct: 508 SVDFPRSHRRTLSVQLRPVAVARESGPDRLPVLREVLAPIVVDEGGGCALVLCTTVAEAQ 567 Query: 582 VCYQRLKE-LNNTQVDIDLFHARFTLNDRREKENRVISNFGKN----------GKRNVGR 630 Y+ L++ L T VD+ L HAR+ ++ R ++ FGK G R Sbjct: 568 QTYRALRDWLGETDVDLRLLHARYPMHRRETLTAELMRAFGKPQHGDGGASHVGNRPAKA 627 Query: 631 ILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHH--RKYRPA------GFEIPV 682 ++VATQVVEQSLD+DFD +++ P +LL QR GRL RH +RPA G + Sbjct: 628 VVVATQVVEQSLDLDFDLVVSDLAPIELLLQRAGRLQRHSGWDPHRPAWADVSRGGQRRF 687 Query: 683 ATILLPDGEGYGRH---EHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLD 732 + PDG+ + + IY + ++ R + + E + PD ++ +D Sbjct: 688 IVLTAPDGDLHRLPRSWKFIYPPISLI-RAHRLLAERAARGVRIPDDVQELVD 739 >UniRef50_Q0AA29 CRISPR-associated helicase Cas3 n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0AA29_ALHEH Length = 871 Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 194/642 (30%), Positives = 284/642 (44%), Gaps = 81/642 (12%) Query: 215 PDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLV 274 P+ AG LADW+GS F + R F Q+ AS + GL Sbjct: 214 PELQHRFAGLVMLADWIGSHEGFFPFRHGPEC-------RAAFA--QRAASEAITTIGLN 264 Query: 275 SNK-RCYEGVHALLDN---GYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWK 330 S R A + G+ P LQ + P P + + E+ TGSGKTE ALA ++ Sbjct: 265 SQPFRSRLDPRAGFTDLFPGFSPTALQAALMDPPNVP-VMIAESDTGSGKTEAALACFFQ 323 Query: 331 LIDQQIADSVIFALPTQATANAMLTRMEASASHLF---SSPNLILAHGNSRFNHLFQSIK 387 L + DS+ FALPT+ A + R+ +F + P L+ G ++ + Q++ Sbjct: 324 LFARGEVDSLYFALPTRVAARELYERILLFVKEVFRDNAPPVLLAVPGYAKVDGE-QALP 382 Query: 388 SRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRS 447 S Q E + W ++ K+ I V T+DQ L++ + V H +R + + RS Sbjct: 383 SEDNLWQDDETLRRRERAWAAERPKRFLAAPIAVGTVDQALMATMQVNHAHLRAVCLERS 442 Query: 448 VLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVEN 507 +L+VDEVHA DTYM GLL A+L G +LLSATL ++ L PV Sbjct: 443 LLVVDEVHASDTYMRGLLRALLDHHTRSGARALLLSATLSADAREAFLTPQS--AVPVVP 500 Query: 508 N------SAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMI 561 + S YP + G + + ++Q EP A L + L+ + Sbjct: 501 SFSEAIQSPYPALTGSGSAPTPIGGVGTRQK------AVQLEP---APYLAEPKALQPRV 551 Query: 562 AAA-NAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLF---------HARFTLNDRRE 611 A A AGA+V ++ N V A + + R E + V LF H RF DR Sbjct: 552 AEALRAGARVLVVLNTVARA-IDFLRAAEADPV-VARTLFCVNNQTCPHHGRFARADRLI 609 Query: 612 KENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHR 671 + V FGK G + +LV TQ +EQSLD+D DWLIT CP D+L QR+GRLHRH R Sbjct: 610 LDREVSRVFGK-GSPDGALLLVGTQTLEQSLDIDADWLITDLCPMDVLLQRIGRLHRHTR 668 Query: 672 KYRPAGFEIPVATILLP---------DGE-------GYGRHEHIYSNVRVMWRTQQHIEE 715 + RP GF+ P T+L+P D + G GR +Y ++R+ T + I Sbjct: 669 R-RPPGFDTPTCTVLMPAEPSLEAWFDAKGRLHGLAGLGR---VYPDLRIAQLTIERIGA 724 Query: 716 LNGASLFFPDAYRQWLDSIYDD---AEMDEPEWVGNGMDKFESAECEKRFKARKVLQW-- 770 G ++ PD R+ +++ A P W G+ +A ++ W Sbjct: 725 --GCTIRIPDDNRELIETTVHPERLARFTGPPWDGHQQQLLGTATAHGLAARTALMPWHQ 782 Query: 771 --AEEYSLQDNDETILAVTRDG--EMSLPLLPYVQTSSGKQL 808 E D DE + TR G + L L P + + G+ L Sbjct: 783 PFGPELRFGDFDERL--ATRLGLEDRRLSLDPPITSPFGQTL 822 >UniRef50_Q03C64 CRISPR-associated helicase n=3 Tax=cellular organisms RepID=Q03C64_LACC3 Length = 922 Score = 200 bits (509), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 170/571 (29%), Positives = 263/571 (46%), Gaps = 70/571 (12%) Query: 307 PGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFS 366 PG+ +IEAP G GKTE AL A +L + + F LPTQATANAM R++ L + Sbjct: 306 PGMVIIEAPMGMGKTEAALVAAEQLAYKGKETGLFFGLPTQATANAMFDRVDEWLRRLAA 365 Query: 367 ----SPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVC 422 + ++ L H + FN + + + E +A V +W S KK L + + Sbjct: 366 DNGETYSIKLMHSKAEFNPNYLKV---PVAEDVDGDASVVVNRWFS--GKKSILDEFSIG 420 Query: 423 TIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILL 482 TID +L L KH ++ LG+ + V+I+DEVHAYD++M+ L L+ +++L Sbjct: 421 TIDNLLQMDLKQKHLALKHLGLSKKVVIIDEVHAYDSFMDQHLFRTLEWLGTYHVPIVVL 480 Query: 483 SATLPMKQKQKLLDTY-----------GLHTDPV----ENNSAYPLINW---RGVNGAQR 524 SATLP + +LL+ Y G V +++ AYPL++ R +N Sbjct: 481 SATLPKATRNRLLEAYFHGKFGQKLSKGADLSRVSSDWQDSEAYPLVSMLDGRRLNQVSH 540 Query: 525 FDLLAHPEQLPPRFSIQPEPICLADMLPDLTML-ERMIAAANAGAQVCLICNLVDVAQVC 583 FD + QL I + M DLT L ER++ A G +I N + AQ Sbjct: 541 FDGKTNQSQLS---------IHVERMSGDLTALGERVLDAIADGGVAGVIVNTIKRAQAL 591 Query: 584 YQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLD 643 L +V + H+ F R + E + + GK KR +++ TQV+EQSLD Sbjct: 592 ADALA----GKVPFIVLHSAFVAAQRAQLETELQNAIGKGSKRPAKLVVIGTQVLEQSLD 647 Query: 644 VDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEH----I 699 +DFD L T P DLL QR GRLHRH RP P +++ EG G E I Sbjct: 648 IDFDILFTDIAPMDLLLQRAGRLHRHA-IARPRALTGP--RLVVTGIEGLGEFEEGSAAI 704 Query: 700 YSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEP-EWVGNGMDKFESAEC 758 Y +M E L A+L PD + + + Y D + D P + +FE+ Sbjct: 705 YGQYLLM-----KTEALLPATLRLPDDISRLVQTTY-DLQRDPPLPGIEEERTRFETKIA 758 Query: 759 EK-------------RFKARKVLQWA--EEYSLQDNDETILAVTRDGEMSLPLLPYVQTS 803 +K R ++R + W ++ + +++ A RD + SL ++ T Sbjct: 759 QKAQKAQAFQIAPPSRRRSRTLHGWLDNDQPGVDVSEQRAEAAVRDIDESLEVILLQHTK 818 Query: 804 SGKQLLDGQVYEDLSHEQQYEALALNRVNVP 834 G L+DG+V + ++ + +A + +P Sbjct: 819 HGDALIDGRVVDSFQLDRMAKVIAQQTIRLP 849 >UniRef50_Q60AC8 CRISPR-associated helicase Cas3 n=1 Tax=Methylococcus capsulatus RepID=Q60AC8_METCA Length = 881 Score = 200 bits (508), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 212/730 (29%), Positives = 303/730 (41%), Gaps = 99/730 (13%) Query: 10 YWGKSSKSLTKGNDIHL-LIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLL 68 +WGK D L L H LDVA+V + + + + ++ L Sbjct: 9 FWGKIRLGQNGQTDQWLSLSQHSLDVASVFAALAELPA-FHHKLKVSSGIELDGIQLQRL 67 Query: 69 FFIAL-HDIGKFDIRFQYK----SAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFN 123 IAL HD+GK ++ FQ K A + P + P ++C F Sbjct: 68 AVIALLHDVGKANLGFQDKVFDAKAPRAGHVRELAPLFDAP--ELCEAF----------- 114 Query: 124 QDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQD--------KSRWE 175 +L + D+F P +S ++ A HHG + Q D ++RW Sbjct: 115 ATALDLDEIADWFD-------PPDSIEQFLLAAWSHHGAPVRFQTGDQTGNYYLARTRWW 167 Query: 176 MPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIP--PDCSSLLAGFCSLADWLGS 233 A QA E + + + F + IP AG LADWLGS Sbjct: 168 R----ADATRDPMQAVAELMRIAKQAFPDAFKRGVARIPGRARLQHRFAGLVMLADWLGS 223 Query: 234 WTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSN--KRCYEGVHALLDNGY 291 + F DI R R+ + L+ + L S+ +R H G+ Sbjct: 224 ----HQAFFPLGRLLDIGFARN--AARRALLTVGLDTASLQSDLAQRPTTFKHWF---GF 274 Query: 292 QPRQLQVLVDALPVAPG-----LTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPT 346 +PR LQ VD AP L + EA TGSGKTE ALA ++L D + FALPT Sbjct: 275 EPRPLQSAVDQ--QAPDDAESRLLIAEAETGSGKTEAALARFFRLFAAGKVDGLYFALPT 332 Query: 347 QATANAMLTRMEASASHLFSSPNLILAH----------GNSRFNHLFQSIKSRAITEQGQ 396 + A + R+ +F P A N + L + + I Sbjct: 333 RVAARELYLRVVNYLEQIFPKPECRPAAVLAVPRYARIDNVPIDKLDRLLPDDRILCHDD 392 Query: 397 EEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHA 456 + Q QW ++ K+ + V T+DQ L+S + +H +R + + RS+L+VDEVHA Sbjct: 393 PDRLRQERQWAAEHPKRFLAATVAVGTVDQALLSAVQTRHAHLRSVCLDRSLLVVDEVHA 452 Query: 457 YDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSA-----Y 511 D YM LL +L +GG +LLSATL + L G T EN + Y Sbjct: 453 SDVYMRRLLRGLLSHHVGLGGHAMLLSATLGAWACAEFLQACGCTTLAAENYAGACAAPY 512 Query: 512 P----LINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAG 567 P L R G R + P + QPE ++ +++A AG Sbjct: 513 PALTLLSGIRRSVGFARGGSVKRVRIDPRSWLKQPE-----------RLISELVSALEAG 561 Query: 568 AQVCLICNLVDVAQVCYQRLKE--------LNNTQVDIDLFHARFTLNDRREKENRVISN 619 A+V ++ N V A + L++ L Q I H RF +DR + V Sbjct: 562 ARVLIVLNTVGRANALQRALEQHPAIQKVWLFRCQDSICPHHGRFAPSDRELLDQAVSRR 621 Query: 620 FGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFE 679 +GK G +L+ TQ +EQSLD+D DWLIT CPAD+L QR+GRLHRH RP GFE Sbjct: 622 WGK-GTPPGPLVLIGTQTLEQSLDIDADWLITDLCPADVLLQRVGRLHRHA-CTRPPGFE 679 Query: 680 IPVATILLPD 689 P T+L+PD Sbjct: 680 APRCTVLMPD 689 >UniRef50_D1YEE0 CRISPR-associated helicase Cas3 n=1 Tax=Propionibacterium acnes J139 RepID=D1YEE0_PROAC Length = 931 Score = 200 bits (508), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 234/873 (26%), Positives = 355/873 (40%), Gaps = 130/873 (14%) Query: 11 WGKSSKSLTKGNDIHLLIYHCLDVAAV-ADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLF 69 WGK+++ D ++ H D A V A+ W Q +++ + + ++ + ++ F Sbjct: 13 WGKTNEV----GDWLPVVQHLEDAAGVMAEVWRLQPQSIRSLLA-DTLGGERAAQTFVCF 67 Query: 70 FIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQ-MCRKFNHGAAGLYWFNQD-SL 127 +HD+GK F +K+ P NG ST +C + G D + Sbjct: 68 LAGIHDVGKISADFAFKAR---------LPRTNGTSTSYLCDQMER--QGFVIGKPDRPI 116 Query: 128 SEQSLGD------FFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLA 181 +LG S + AP V GHHG S D +K + SLA Sbjct: 117 PHGALGQTHVTSWLLSRYPDAPRARRCARNIASIVGGHHGTNPTSADVEK----VELSLA 172 Query: 182 SYAAQDKQAREEWISVLEA-----LFL-----TPAGLSINDIPPDCSSLLAGFCSLADWL 231 K R+E + + A FL +P + + C +L+ + DW+ Sbjct: 173 REEHLWKATRDEVLDTMAAHTGADEFLPTWMGSPISIQTQIV---CEALVI----VTDWI 225 Query: 232 GSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGY 291 S T + F P DR + A L+L C V L + Sbjct: 226 ASSETLFPYDFATPTP-----------DRVRRAVARLQLPHPWQPAPCPGSVDELFGTSF 274 Query: 292 ------QPRQLQVLV----DALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVI 341 P +Q + D +P PGL IEAP G GKTE AL A L ++ + Sbjct: 275 PSLTHGAPNAMQRVAVEVADTMP-EPGLLAIEAPMGHGKTEAALMCAQVLAERFGLGGIF 333 Query: 342 FALPTQATANAMLTRMEA--SASHLFSSPNLILAHGNSRFNHLFQSI----KSRAITEQG 395 F LPT AT+N M R+ A ++ LAH + N +Q + + A+ ++G Sbjct: 334 FGLPTMATSNPMFGRVREWLDAVPAKDPSSISLAHSKAGLNEEYQQLMPWNATMAVYDEG 393 Query: 396 ---QEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVD 452 Q EA +W K+ L V TIDQ L + L KH +R LG+ V+I+D Sbjct: 394 AGTQREASAIVHEWF-LGRKRAILADHVVGTIDQALFTGLKAKHVVLRHLGLASKVVIID 452 Query: 453 EVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTY--GLHTDPVE---- 506 EVHA D YM L+ VL+ VIL+SATLP Q+ +L Y G H + Sbjct: 453 EVHAADVYMREYLKVVLEWLGAYRTPVILMSATLPPAQRHELALAYAKGRHGRNAQVVLT 512 Query: 507 NNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTML--ERMIAAA 564 YP++ AQ+ + P + Q + D L +L L ++M Sbjct: 513 TTDEYPIVTTISDGVAQQGTSTSAPGR-------QVVVRSMGDSLDELINLIEDKM---- 561 Query: 565 NAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNG 624 + G + +I + V AQ + L + ++ L H+RF R +E ++ G++G Sbjct: 562 SDGGCIGIIRDTVARAQDTFDALD--SRLDCEVVLVHSRFLAPQRARREADLVRRLGRSG 619 Query: 625 KRNVGR-ILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVA 683 + R ++V TQV+EQSLDVDFD LI+ P DLL QR+GRLHRH R+ RP Sbjct: 620 ESRPDRLVVVGTQVLEQSLDVDFDLLISDIAPIDLLLQRIGRLHRHDRQ-RPVPLREATC 678 Query: 684 TIL-----LPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDA 738 + L DG + R + + RT ++ L+ + P + + Y++ Sbjct: 679 LVTGVDAWLEDGPQFSRGIELVYEPDFLLRTAAILDGLSSGIVNVPQDIPRLVRIAYEET 738 Query: 739 EMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQD-----------NDETIL--- 784 W G E A E R + + A Y L D D + Sbjct: 739 FTWPDAWASRG----EDAALESRSRHKAATSRAMTYRLSDPFGASSLMKGITDMKTVDPE 794 Query: 785 -----AVTRDGEMSLPLLPYVQTSSGK-QLLDG 811 A RD E S+ ++ QT+SG L+DG Sbjct: 795 NTRGHASVRDSEDSIEVIVVQQTNSGGYHLMDG 827 >UniRef50_D1Y491 Superfamily II DNA and RNA helicase n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y491_9BACT Length = 910 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 215/752 (28%), Positives = 311/752 (41%), Gaps = 98/752 (13%) Query: 27 LIYHCLDVAAVADCWWDQSVVLQNTFCR--NEMLSKQRVKAWLLFFIALHDIGKFDIRFQ 84 L+ H DVAAV + D + Q F R LS + ++ L HD GK +FQ Sbjct: 23 LVAHLTDVAAVFEQIMD-GALFQRHFQRVLGRPLS-ETLRERLCVLALWHDYGKISPKFQ 80 Query: 85 YKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQS-----LGDFFSFF 139 K E KL P R NH FN S+ + L D F+ Sbjct: 81 LKYREKIEKLTPK------------RSINHIDTA---FNLSSIRYKGKIWNELLDVMHFW 125 Query: 140 DAAP-----HPYESWFPWVEAVTGHHGFI-------LHSQDQDKSRWEMPASLASYAAQD 187 + H Y +W + HHG + + + + WE +L A Sbjct: 126 ENEDQKRILHDYLTW-----VILAHHGAVPTQERCDMAQDNSSRKCWERGVNLDPQKALG 180 Query: 188 KQA--REEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNED 245 + A + W A F GL P L AG LADW+ S + + D Sbjct: 181 ELAALSQRWYP---AAFAAGGGLPEE---PCFQHLFAGTLMLADWIASDRSLFPYCGECD 234 Query: 246 A-----PSDINALRTYFQDRQQDASRVL-ELSGLVSNKRCYEGVHALLDNGYQPRQLQVL 299 A PS + RQ A +VL L + +KR G+ P +Q Sbjct: 235 ARGEQRPSPEEEDSLSYSRRQ--AEKVLASLVWTLDDKRPDRAPDFAAQFGFSPNGIQQA 292 Query: 300 VDALPVAP--GLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRM 357 VD L ++P GL ++EA TGSGKTE AL +L+ D + FA P + A + RM Sbjct: 293 VDKLVLSPDGGLYILEAETGSGKTEAALRLYTRLLAAGYVDGLYFANPLRFAATQLFERM 352 Query: 358 EASASHLFSS---PNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKV 414 ++ F P + G R N R E E + W ++ K+ Sbjct: 353 VKFSASSFGQEQIPVTLAVPGYLRVNDREGLRVGR--FEVDWREVNDRAVGWYAEQPKRF 410 Query: 415 FLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQAD 474 I TIDQ L++ L V H +R + RS+L+VDEVH+ D YM+ L+ +++ Sbjct: 411 LASPIASGTIDQALLAGLRVPHAHMRAAALQRSLLVVDEVHSSDAYMSALICGLIELFRR 470 Query: 475 VGGSVILLSATLPMKQKQKLLDTY---GLHTDPVENNSAYPL-----INWRGVNGAQRFD 526 VGG V+L+SATL + ++ L + G PL + + + + Sbjct: 471 VGGHVLLMSATLGSESTERYLKVWNENGPQRPEQTETERLPLTEAVKVPYPLLTSSAEPP 530 Query: 527 LLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQR 586 L A +Q EPI + + G V ++ N V A+ ++ Sbjct: 531 LTAASPSRGKSVRMQREPIQQDPQAVAQLATQNLAPFDEKGPCVLILRNSVRQARRTFRA 590 Query: 587 LKELNNTQVDID------LFHARFTLNDRREKENRVISNFGKNGK-----RNVGRILVAT 635 L+++ + L H+R+ DRR + V FGK R+ +LVAT Sbjct: 591 LRKILPAEKIFSVNEIPTLHHSRYAPEDRRLLDREVGRRFGKEAVPPDQLRDCC-VLVAT 649 Query: 636 QVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGE---- 691 Q +EQSLDVDFD +IT CPAD++ QR+GRL RH R+ RPAGFE P +LLPD + Sbjct: 650 QTLEQSLDVDFDLIITDLCPADVMLQRIGRLFRHQRR-RPAGFERPRCVVLLPDADCGWL 708 Query: 692 --------GYGRHEHIYSNVRVMWRTQQHIEE 715 GYG E Y N+ + T + +EE Sbjct: 709 LGAEARSYGYG-TERAYVNLPSLAATWRLLEE 739 >UniRef50_Q47PJ0 CRISPR-associated helicase, Cas3 family n=1 Tax=Thermobifida fusca YX RepID=Q47PJ0_THEFY Length = 944 Score = 197 bits (500), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 244/877 (27%), Positives = 355/877 (40%), Gaps = 122/877 (13%) Query: 10 YWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQ--SVVLQNTFCRNEMLSKQRVKAWL 67 +W K K + L+ H LD AA A W++ S L++T + ++ + Sbjct: 20 FWAKERGLRGK---TYPLVCHSLDAAAAALVLWNEYLSPGLRDTIASSMETDEEHAGHCI 76 Query: 68 LFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYW--FNQD 125 F+ LHDIGK FQ + A L P L+G + +H AA W F Sbjct: 77 AFWAGLHDIGKLTREFQQQIAID-LSAYPGE-ELSG------EQRSHAAATGKWLPFALP 128 Query: 126 SLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAA 185 SL + G + + GHHG H +SR LA + Sbjct: 129 SLGYPNGGLVTGLV-------------AQMLGGHHG-TFHPHPSFQSR----NPLAEFGF 170 Query: 186 QDKQAREEWISVLEALFLTPAGLSINDIPPD-----CSSLLAGFCSLADWLGSWTTTNTF 240 ++ ++L A+F + PPD +S++ G LADWL + F Sbjct: 171 SSPHWEKQRHALLHAVF----DATGRPTPPDMLDGPTASVVCGLVILADWL---VSQEDF 223 Query: 241 LFNE--DAPSD--INALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQL 296 L P+D +ALR +F+ + +L+ +GL + +P L Sbjct: 224 LLERLTSLPADGSASALRAHFETSLRRIPSLLDAAGLRPITVPPATFTESFPHLSKPNGL 283 Query: 297 QV-LVDALP---VAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANA 352 Q L LP PGL +I AP G GKTE A A L ALPT ATA+ Sbjct: 284 QASLAKHLPCLCTGPGLVLITAPMGEGKTEAAYHVADLLGKATGRPGRFLALPTMATADQ 343 Query: 353 MLTRMEASASH------LFSSPNLILAHGNSRFNHLFQSIK----SRAITEQGQEEAWVQ 402 M TR++ A + L S L L H + N + S+ ++ G + + Sbjct: 344 MHTRLKEYARYRVENTDLPRSSTLALLHSMAWLNPDYAPADLPGVSKVLSNLGHRDPFA- 402 Query: 403 CCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMN 462 WL K+ L V TIDQ L++VL KH +R G+ V++VDE HA D YM Sbjct: 403 ATDWL-MGRKRGLLAPWAVGTIDQALMAVLRAKHNALRLFGLAGKVVVVDEAHAVDPYMQ 461 Query: 463 GLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTY----------GLHTDPVENNSAYP 512 LLE +L+ + V+LLSATL L+ Y PV S YP Sbjct: 462 VLLEQLLRWLGTLDVPVVLLSATLHHSIANSLVKAYLEGARGRRWNRSEPQPVSEVS-YP 520 Query: 513 LINWRGVNG-----AQRFDLLAHPEQLPPRFSIQPE----PICLADMLPDLTMLERMIAA 563 W V+ + D+ P PR ++ P+ + + + + Sbjct: 521 --GWLHVDARIGKVTRSSDVDPLPIATTPRKPLEVRLVDVPVKEGALNRSTVLAKELTPL 578 Query: 564 ANAGAQVCLICNLVDVAQVCYQRLKE----LNNTQVDIDLFHARFTLNDRREKENRVISN 619 G +IC V AQ Y L + L D+ L H+RF R E ++ Sbjct: 579 VKQGGCAAIICTTVAEAQGVYDLLSQWFATLGEDAPDLYLLHSRFPNRQRTEITATIVDL 638 Query: 620 FGKNG-----KRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRK-- 672 FGK G + G +LVATQVVEQSLD+D D +I+ P LL QR GR RH Sbjct: 639 FGKEGAQSGRRPTRGAVLVATQVVEQSLDLDVDLMISDLAPVSLLLQRAGRCWRHEHLGI 698 Query: 673 -YRPAGFEIPVATILLPDGEG-------YGRHEHIYSNVRVMWRTQQHIEELNGASLFFP 724 RP + P +L P+ G + R + ++ RT + NGA + P Sbjct: 699 INRPQWAKQPELVVLTPEQNGDADRAPWFPRSWTSVYPLALLQRTYTLLRRRNGAPVQIP 758 Query: 725 DAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKV-----------LQWAEE 773 + +Q +D +YDD + E + M++ E +R AR L E Sbjct: 759 EDVQQLVDDVYDDDSLAED--LEADMERM-GEELAQRGLARNAVIPDPDDAEDNLNGLTE 815 Query: 774 YSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLD 810 +S D DE +LA TR G S+ +L Y ++G + LD Sbjct: 816 FSF-DVDEHVLA-TRFGAGSVRVLCYYVDTAGNRWLD 850 >UniRef50_B7KJ22 CRISPR-associated helicase Cas3 n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7KJ22_CYAP7 Length = 908 Score = 195 bits (495), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 186/718 (25%), Positives = 316/718 (44%), Gaps = 88/718 (12%) Query: 11 WGKSSKSLTKGNDI-HLLIYHCLDVAAVADCWWDQ--SVVLQNTFCRNEMLSKQRVKAWL 67 W K K K ++I H ++H +D A V + S L + + ++ + + + Sbjct: 8 WAKLDK---KNSEIYHPPLFHLIDTATVTKALLTKGLSPYLVSRLSESLEINHESLLQFA 64 Query: 68 LFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPST----QMCRKFNHGAAGLYWFN 123 F HD+GK FQ+++ + + L G S+ Q R+ N G Sbjct: 65 PFLSGSHDLGKIAPDFQFQNDQG----SEIAKKLMGESSYSLWQKNRERNKILHG----- 115 Query: 124 QDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTG-HHGFILHSQDQDKSRWEMPASLAS 182 +++ +L ++ F E + +TG HHG H D +++ Sbjct: 116 --TITAVTLPEYLENFGLDSIIAEE----LAVITGGHHGIFPHPNDIKNAKY-------- 161 Query: 183 YAAQDKQAREEWISVLEAL---FLTPAGLSINDIP----PDCSSLLAGFCSLADWLGSWT 235 ++ ++ WI + + + + D P P +LAG +L+DW+ S Sbjct: 162 --SKSNIGKKHWIKLRKETVDELVKYTKIEKKDFPTKLTPASKIILAGLITLSDWIAS-- 217 Query: 236 TTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVS---------NKRCYEGVHAL 286 N F P L Y + + + L SG + +K+ + + Sbjct: 218 --NQAWFR---PCSNKPLEEYVKTIDEKVDKALRESGWIGWESHDSTLPSKKLFNYIKE- 271 Query: 287 LDNGYQPRQLQVLVDA----LPVAPGLTVIEAPTGSGKTETALAYA-WKLIDQQIADSVI 341 ++PR LQ ++ L P L +IE PTG GKTE ++ A W + IA Sbjct: 272 ----FEPRHLQEEIEKKMPELQDKPFLLIIEGPTGEGKTEGSIIVAEWCGVSGGIARGAY 327 Query: 342 FALPTQATANAMLTRMEASASHLFSSPNLI--LAHGNSRFNHLF-QSIKSR--AITEQGQ 396 FALPTQAT+N + R+ + + + L H N++ + F ++I R + ++ + Sbjct: 328 FALPTQATSNELYKRISQYLRNRYPLQKVPFHLVHSNAQLSDTFSETIICRLDQVYDEDK 387 Query: 397 EEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHA 456 V +W + K+ L G TIDQ L+ +L KH F+R G+ +I+DE+HA Sbjct: 388 HPPGVIANEWFTY-RKRPLLSPWGTGTIDQALMGILRSKHNFVRLFGLAGKTVILDEIHA 446 Query: 457 YDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGL---HTDPVENNSAYPL 513 YD Y + L+E +L+ A +G V+ +SATL KQ++ + Y + P+ N YP Sbjct: 447 YDAYTSTLIEWLLEWLAALGSPVVAMSATLSQKQRETFVAAYSRGFGESAPILNQCPYPR 506 Query: 514 INWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLI 573 + Q + + +L I+ E I A +P + + + G ++ Sbjct: 507 LTICSPKIEQNKVISFNISKLNASRKIRFEWIDEA-QIPQI-----LENSLKQGGTAAIL 560 Query: 574 CNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGR--- 630 + AQ YQ L ++ + L H+RF DR+++E R ++ +GK + R Sbjct: 561 RTQIAWAQQTYQDLIPSTFSKDERILLHSRFLHIDRKQQEKRCLAVYGKEVDKTKVRPRS 620 Query: 631 ILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLP 688 ATQ++EQSLD+DFD +I+ P DLL QR+GR+ RH R RP G P+ ++ P Sbjct: 621 ACAATQIIEQSLDLDFDLMISDLAPIDLLLQRIGRIWRHDR-VRPTGITEPLLYLIRP 677 >UniRef50_B0TDT7 Crispr-associated helicase cas3 n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TDT7_HELMI Length = 754 Score = 193 bits (490), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 178/591 (30%), Positives = 288/591 (48%), Gaps = 67/591 (11%) Query: 215 PDCSS---LLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELS 271 PD S+ LL+G LADW+ S + F D P A + F+ A + L+ Sbjct: 56 PDHSTFGMLLSGITVLADWIAS----SEAFFGGDIPDWHQAKQKNFEVL---ALQFLDQV 108 Query: 272 GLVSNK-------------RCYEGVHALLDNGYQPRQLQVLVDALPVAP---GLTVIEAP 315 GL K R + +H R LQ L + + + GL +IEAP Sbjct: 109 GLSGKKPINAEMTEEDSFLRFWRHLHL-----PSLRPLQALCEQIARSEKTGGLAIIEAP 163 Query: 316 TGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHG 375 G GK+E + + D + ALPT ATAN M +R++ S+ + L L HG Sbjct: 164 MGEGKSEAGIYLLNCWVAGSGGDGMYVALPTAATANQMYSRVQELLSNQGTEKGLRLVHG 223 Query: 376 NSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVK 435 + L + E+ + E W + K+ L GV T+DQ +++ + VK Sbjct: 224 MAWLLDL-----QKQYWEEDEREDWFR-------PKKRALLAPYGVGTVDQAMLAAMRVK 271 Query: 436 HRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLL 495 +R LG+ L++DEVHAYDTYMN +++ +L + V+LLSATLP+K++++LL Sbjct: 272 FGCLRLLGLAGKGLLIDEVHAYDTYMNTIIDQLLAWCGHLSIPVVLLSATLPVKRRKQLL 331 Query: 496 DTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLT 555 + YG N YPL+ F +L P + ++++ P L + + Sbjct: 332 EAYGGDVIEGAVNQQYPLVTVAVDAKTCEFPVL--PSRPNQEYNLRMLPGALENAEAIVN 389 Query: 556 MLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNN-----TQVDIDLFHARFTLNDRR 610 + A ++G ++ N V +AQ +++LK+L+ + V++ L+HARFT R+ Sbjct: 390 AVLDWADAHDSGC-AGVVVNTVYMAQQVFRKLKKLHRKGRLPSDVELLLYHARFTAGRRK 448 Query: 611 EKENRVISNFGKNGKRNVGR-----ILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGR 665 E++V+ K ++ R +LVATQVVEQSLD+DFD L T+ P DLL QR+GR Sbjct: 449 AIEDKVLRWLDKGSLQDPARRPKRAVLVATQVVEQSLDIDFDVLFTELAPIDLLLQRIGR 508 Query: 666 LHRHHRKYRPAGFEIPV-ATILLPD-GEGY--GRHEHIYSNVRVMWRTQQHIEELNGASL 721 L RH R R E +I P+ E + G+ +Y + V+ +T +++ N L Sbjct: 509 LWRHERPRRLNHAESKANVSIFAPEIAERFYWGKTGAVYEPL-VLLKTLAVLQKRNQFQL 567 Query: 722 FFPDAYRQWLDSIYDDAEMDEP-EW---VGNGMDKFESAECEKRFKARKVL 768 P +R ++S+YDD + P EW + + +++ + E++ +AR+ L Sbjct: 568 --PQDFRPLIESVYDDEIANVPDEWLYSLASVREEYRKNQVEQQQRARESL 616 >UniRef50_C7MTN1 CRISPR-associated helicase Cas3 n=1 Tax=Saccharomonospora viridis DSM 43017 RepID=C7MTN1_SACVD Length = 943 Score = 192 bits (488), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 254/931 (27%), Positives = 378/931 (40%), Gaps = 134/931 (14%) Query: 5 KYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQ-RV 63 +++ WGKS+ G +LL+ H LD AAVA+C WD+ + +E+ + Sbjct: 8 RWLEALWGKSASR--GGGRRNLLLAHMLDTAAVAECLWDRFLAPVTRRSVDEIAGGPGKG 65 Query: 64 KAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRK-FNHGAAGLYWF 122 + + + +HD GK FQ+ + + A L ++ R+ + H AG Sbjct: 66 RPFFAWLCGVHDCGKAVPAFQFVDEDCARLVWDA--GLQWDRHRVARQPWRHDKAGAALL 123 Query: 123 NQDSLSEQSLGDFFSFFDAAPHPYESWFPWV-EAVTGHHGFILHSQDQDKSRWEMPASLA 181 + A P E WV V GHHG +D R PA+L Sbjct: 124 RR-------------CLPQAGWPVEQ-IDWVWPLVAGHHG-TFPGRDALYLR---PAALR 165 Query: 182 SYAAQDKQAREEWISVLEAL---------FLTPAGLSINDIPPDCSSL-LAGFCSLADWL 231 + + A EW+ E L + T A ++ ++P L LAG +ADW+ Sbjct: 166 AV----QGASAEWLRAQEVLLRVFTEQLGYRTVAEVAPVEVPNRALQLQLAGLVVMADWI 221 Query: 232 GSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDN-G 290 S TT L +E A + I R R A R L L G R G A D G Sbjct: 222 ASNTTVFEGL-DELAKTGIEQSRR----RADRAWRELGLRGGWGT-RPVPGPEAFRDRFG 275 Query: 291 YQPRQLQVLVDALPVA-----PGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALP 345 R Q ++ + VA PGL V EAP G GKT+ AL A L + AD V +P Sbjct: 276 QDMRPAQAMI--VDVARRMPDPGLMVFEAPMGEGKTKAALLAAEILAARFGADGVFVGMP 333 Query: 346 TQATANAMLTRMEA--SASHLFSSPNLILAHGNSRFNHLFQSIKSR-------------- 389 TQAT + M + + +A+ + L HG R N ++++ Sbjct: 334 TQATCDPMFSEVRGWVAATEPGLEGQVALLHGKRRLNKQWRALLEATGEAPMDDYCVPED 393 Query: 390 -------AITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGL 442 A E + +W S K+ L V TIDQ+L + KH +R Sbjct: 394 DAQYGMVATEEDSGAPDRLVPAEWFLGS-KRGLLCPFVVGTIDQLLFAATRTKHVMLRMA 452 Query: 443 GIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTY-GLH 501 G+ V+I+DEVHA D YM+ LE L+ V+LLSATLP +Q+++L++ Y H Sbjct: 453 GLIGKVVILDEVHACDVYMSQFLEEGLRWLGQARVPVVLLSATLPPEQRERLINAYVSAH 512 Query: 502 T-----DPVENNSAYPLINW--RGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLP-- 552 +PV YP + G +G R ++ H P ++ + + D P Sbjct: 513 VQPSTPEPVHPPRGYPSVTAVSVGSDGNVREPIVEHTGSWRPDQHVR---VSVVDETPHQ 569 Query: 553 --------DLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRL-KELNNTQVDIDLFHAR 603 + + + + G +I N VD AQ Y+ L + QV L H R Sbjct: 570 GRTAADDAENAVADLIADRLREGGCALVIRNTVDRAQATYRMLARRFGRDQV--GLLHGR 627 Query: 604 FTLNDRREKENRVISNFGKNGKRNVGR----ILVATQVVEQSLDVDFDWLITQHCPADLL 659 DR E+ + FG + + V ILVAT + EQS DVD D L+T P DLL Sbjct: 628 LHAGDRAERTEDNLGRFGPDPAKRVPPGTRWILVATSLAEQSFDVDADLLVTDLAPIDLL 687 Query: 660 FQRLGRLHRHHRKYRPAGFEIP--VATILLPDGEG-----------YGRHEHIYSNVRVM 706 QR+GRLHRH+ +RP + P V T L G YG + + S V+ Sbjct: 688 LQRIGRLHRHNLAHRPTPLKTPEVVVTGLCRRGAKPPWLVRQSIAIYGEYLLLRSAALVI 747 Query: 707 ------WRTQQHIEEL-----NGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFES 755 WR + EL +G L P A+ + + Y D + + E + N + F Sbjct: 748 EAEGGQWRVPSQVPELVAAVYDGKPLSVPRAWVEAEHAAYVDYQRRQEERIANA-EPFRL 806 Query: 756 AECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQ--- 812 A + + ++ A+ RDG S+ ++ + G L G+ Sbjct: 807 ARRGEEHSGTLEGLHVGAHREGLGEQQFQALVRDGAPSVEVVLVHEGDRGYSTLSGRRLG 866 Query: 813 VYEDLSHEQQYEALALNRVNVPFTWKRSFSE 843 V D++ E E LA V +P + S E Sbjct: 867 VNGDVAAELLDEILAAT-VRLPQSLTTSAEE 896 >UniRef50_D2RAZ8 CRISPR-associated helicase Cas3 n=3 Tax=Actinobacteria (class) RepID=D2RAZ8_GARVA Length = 948 Score = 191 bits (486), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 168/547 (30%), Positives = 247/547 (45%), Gaps = 61/547 (11%) Query: 209 SINDIPP---DCSSLLAGFCSLADWLGS------WTTTNTFLFNEDAPSDINALRTYFQD 259 ++ND+P LL G +ADW+ S + L + Q Sbjct: 205 NVNDLPEISEPAQVLLCGLVIMADWIASNEHYFPLISIEQDLIENQEERYRKGWENWLQH 264 Query: 260 RQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQV-LVDALPVA--PGLTVIEAPT 316 +D L VS Y G+ P +Q+ L D + + PG+ ++E+ Sbjct: 265 GSKDVWESLNCCSNVSQTYKYRF-------GFFPNNIQIALHDVISQSKEPGIFILESAM 317 Query: 317 GSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRME----ASASHLFSSPNLIL 372 GSGKTE +L A +L + V F LPTQAT+N M R+E S L L Sbjct: 318 GSGKTEASLIAAEQLANLTGRSGVFFGLPTQATSNGMFRRVEDWLKNVNSDFQGEIGLRL 377 Query: 373 AHGNSRFN-------HLFQSIKSRAITEQGQEEA---WVQCCQWLSQSNKKVFLGQIGVC 422 HG + N H Q++ + + V W + K L V Sbjct: 378 VHGKAELNADYAHLQHGMQNMNDGCESTSNSNDVNNNGVILNDWFT-GRKTAMLDDFVVG 436 Query: 423 TIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILL 482 T+DQ L++ L KH +R LG+ + V+I+DEVHAYD YMN LE L A G V+LL Sbjct: 437 TVDQFLLASLKQKHLMLRHLGLSKKVVIIDEVHAYDAYMNKYLEESLIWMAAYGVPVVLL 496 Query: 483 SATLPMKQKQKLLDTY--GL-----------HTDPVENNSAYPLINWRGVNGAQRFDLLA 529 SATLP K++++L+ Y GL + D NN YPLI + N ++ + Sbjct: 497 SATLPAKRRKELIKAYMCGLFGFNWRECDKSNVDFETNN--YPLITYSDKNCVKQ-KFIE 553 Query: 530 HPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQR-LK 588 + S++ + D +++ + + N G +I N V AQ Y + Sbjct: 554 NDASDNKSVSVRK----ITDDNLHESLVGELKSLLNNGGIAGIIVNTVKRAQEIYNACVD 609 Query: 589 ELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDW 648 E ++ +V + H++F DR KE ++ + GKN R I++ TQV+EQSLD+DFD Sbjct: 610 EFSDDEVIV--IHSQFIATDRVRKEQQICNMIGKNAHRPARAIIIGTQVLEQSLDIDFDV 667 Query: 649 LITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATIL-LPDGEGYGR-HEHIYSNVRVM 706 L T P DLL QR GRLHRH + R F P+ +L D + + E IYS +M Sbjct: 668 LFTDLAPIDLLLQRAGRLHRHTIE-RSETFAEPILYVLGTSDRYEFDKGSESIYSKYLLM 726 Query: 707 WRTQQHI 713 RTQ ++ Sbjct: 727 -RTQYYL 732 >UniRef50_C0W6U4 CRISPR-associated helicase n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W6U4_9ACTO Length = 981 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 245/909 (26%), Positives = 364/909 (40%), Gaps = 172/909 (18%) Query: 11 WGKSSKSLTKGNDIHLLIYHCLDVAAV----ADCWWDQSV--VLQNTFCRNE--MLSKQR 62 W KS + + + L I H LD AAV A W S+ ++ F + + + Sbjct: 11 WAKSGYNPERERWLPLPI-HLLDTAAVSRHLAKNWLSPSICSIIDREFATSPSGLSPSEE 69 Query: 63 VKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWF 122 A + +HDIGK F K E + ++ + RK HG AG F Sbjct: 70 FTALAAWISGVHDIGKASPAFASKVPELYDRMCESGFERVPVDPLERRKVPHGLAGHRIF 129 Query: 123 NQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLAS 182 +Q L + + +ES V HHG +P + AS Sbjct: 130 ------QQWLENVHGWS------FESAEALACIVGAHHG--------------IPPTYAS 163 Query: 183 YAAQDKQARE------EWISVL-EALFLTPAGLSINDIPPDCSS---------LLAGFCS 226 Q+ + RE W +V E L L ++ + S +L+G Sbjct: 164 L--QESEGREPLIGTGTWTTVQNELLELVTEHCEVSSLLAHWSKRTWSQPFLVILSGLVI 221 Query: 227 LADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHAL 286 +ADWL S + +D D+ A + Q Q +R+ EL + GV Sbjct: 222 VADWLASTEDYFPLVSADDDGRDLLAPDRHRQRVTQGLARI-ELPAPWRPRDEEAGVSDT 280 Query: 287 LDNGY-----------QPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQ 335 L + + Q R ++ + +P+ PG+ +IE TG GKTE AL A L + Sbjct: 281 LRHRFSLPEGSTATEVQTRAVE-MARTMPM-PGMLIIEDSTGGGKTEAALMAAEVLAARS 338 Query: 336 IADSVIFALPTQATANAMLTRM--------EASASHLFSSPNLI-LAHGNSRFNHLFQSI 386 V+FALPTQAT +AM R EA AS S + L HG +R N + Sbjct: 339 GRAGVLFALPTQATTDAMFARELSWLESLEEAYASDGAPSTFAVQLIHGRARLNKQAGQL 398 Query: 387 KSRAITEQ--------GQEEAWVQCCQ----------------------------WLSQS 410 + R + G + CQ W + Sbjct: 399 RRRGYELRSQLLGSLGGDDSTLPHPCQIGWDEIEARAGRELDSSHGRRADIAIGAWFN-G 457 Query: 411 NKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLK 470 KK L V T+D +L + H +R LG+ R V+IVDEVH+Y T+MN L+ L Sbjct: 458 RKKAMLADFVVTTVDHLLFGAMRSPHLALRHLGLSRKVVIVDEVHSYSTHMNVYLDRALT 517 Query: 471 AQADVGGSVILLSATLPMKQKQKLLDTY--GL----------HTDPVENNSAYPLINWRG 518 A G VILLSATL + +L Y GL H P ++ +P + G Sbjct: 518 WLAAYGVPVILLSATLSQARCAELTSAYRHGLALADGQRVPRHPSPDPLSTPFPCLVSTG 577 Query: 519 VNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVD 578 + G++ + + + + ++P L M A + G ++ N V Sbjct: 578 LAGSR----VVGSSSAGRTARVHVDRLGRDQLVPTLRM------ALSDGGCALVVRNTVR 627 Query: 579 VAQVCYQRLK-ELNNTQVDIDLFHARFTLNDRREKENRVISNFG--KNGKRNVGR-ILVA 634 AQ Y+ L+ EL ++ + HARFT+ DR K++ ++ FG ++G R ++VA Sbjct: 628 RAQETYELLRSELGE---EVSVHHARFTVGDRLAKDDELLKKFGPPRSGPDRPHRAVVVA 684 Query: 635 TQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFE--------IPVATIL 686 TQVVEQSLDVDFD LIT P DL+ QR+GRLHRH R RPA +P T Sbjct: 685 TQVVEQSLDVDFDLLITDLAPIDLILQRMGRLHRHERP-RPASLTEATCLVDWLPTPTSE 743 Query: 687 LPDGEGYGRHEHIYSNVRVMWRTQQHIEELNG-ASLFFPDAYRQWLDSIYDDAEMDEPEW 745 P EG + IY ++ ++ + + G + P ++ +Y + P W Sbjct: 744 SPSLEGGA--QAIYGSLDLLRSAAVLHKVMEGPGEVRIPQDVHALIEGVYGELVSTPPAW 801 Query: 746 VGNGMDKFESAECEKRFK-----------------ARKVLQWAEEYSLQDNDETILAVTR 788 + A+ KR K A ++ W +L DNDE A R Sbjct: 802 DKALAEAASKADELKRAKTDAARTFLLSSPPRASCASSLIGWLHSAAL-DNDEKGRAQVR 860 Query: 789 DGEMSLPLL 797 DGE SL ++ Sbjct: 861 DGEDSLEVI 869 >UniRef50_C2CN10 CRISPR-associated helicase Cas3 family protein protein (Fragment) n=1 Tax=Corynebacterium striatum ATCC 6940 RepID=C2CN10_CORST Length = 792 Score = 189 bits (480), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 169/578 (29%), Positives = 253/578 (43%), Gaps = 66/578 (11%) Query: 149 WFPWVEA----VTGHHGFILHSQDQDKSR---------WEMPASLASYAAQDKQAREEWI 195 W P E V HHG + D D++R W + + A D + I Sbjct: 12 WGPVAETIASVVESHHGIPARTVDYDRARAILREYPENWLLVQAAVIEAMADATEVKPII 71 Query: 196 SVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRT 255 +++ P L+ G ADW S ++F+ + Sbjct: 72 GKIQSELFVP-----------TIQLITGLVIAADWCASNERAFPYVFDCEQ--------- 111 Query: 256 YFQDRQQDASRVLELSGLVSNKRC-------YEGVHALLDNGYQPRQLQVLVDALPVA-- 306 + R QD + +GL + + Y + + PR +Q AL Sbjct: 112 --EQRVQDGLASIGFAGLWNASKTMKPDVAEYFAAAFGWPDEWDPRPIQQRAFALARGSD 169 Query: 307 -PGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLF 365 L +IEA TGSGKTE ALA A ++ V+FA PT ATAN + R+ A ++ Sbjct: 170 GASLHIIEASTGSGKTEAALAAAHAYAEKHGCHGVVFAAPTMATANGLFNRVIQWAQNVV 229 Query: 366 SSPNLI---LAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVC 422 + + LAH + +Q ++ + ++ V +W + S KK L V Sbjct: 230 PAGDTTAAYLAHSMNSLVKEYQRLRVKGVSTDTSGNGSVTAMEWFA-SPKKGLLSNFAVS 288 Query: 423 TIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILL 482 T+DQVL+ L +H +R LG+ V+I+DEVHAYD++ + LE+ LK A VILL Sbjct: 289 TVDQVLMMALQSRHNMLRHLGLAGKVVIIDEVHAYDSFTSAYLESTLKWLAWYEVPVILL 348 Query: 483 SATLPMKQKQKLLDTYG--LHTDPVENNS-AYPLINWRGVNGAQRFDLLAHPEQLPPRFS 539 SATLP+ +K+ L+ Y L + E+ S YPL+ NG + L P ++ S Sbjct: 349 SATLPVDKKESLVQAYRSVLGEEDWESVSDGYPLLTIADANGVREESLDIGPNEIHADVS 408 Query: 540 IQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDL 599 + + D D +L G ++CN V AQ Y L + +++L Sbjct: 409 V------IGDT--DRELLTLCEELLTDGGCALVVCNTVRRAQNSYSML--VKKFPDEVEL 458 Query: 600 FHARFTLNDRREKENRVISNFGKNG----KRNVGRILVATQVVEQSLDVDFDWLITQHCP 655 HA F ++R KE +++ G R RI VATQVVEQSLD+D D +I+ P Sbjct: 459 HHAAFIAHERAVKEGKMLQQLGPEARRGRSRPYRRIYVATQVVEQSLDIDVDVMISDMAP 518 Query: 656 ADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGY 693 DLL QR GRLHRH R ++ A + + EG+ Sbjct: 519 IDLLVQRAGRLHRHQRPLEDRPEKLRRARLFIRGAEGW 556 >UniRef50_C7QEM7 CRISPR-associated protein, Cse1 family n=12 Tax=Actinomycetales RepID=C7QEM7_CATAD Length = 1540 Score = 189 bits (480), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 173/486 (35%), Positives = 236/486 (48%), Gaps = 51/486 (10%) Query: 220 LLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRC 279 LL G +ADW+ S NT LF A A + R + A R LEL + K Sbjct: 233 LLTGLVIVADWIAS----NTDLFPYPALGTGEAAIDPGK-RVELAWRGLELPAPWAPKYL 287 Query: 280 YEGVHALL--------DNGYQP-RQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWK 330 G+ LL D +P +Q+ V + + APGL VIEAP G GKTE AL A Sbjct: 288 MPGMQGLLASRFGLPADAQLRPVQQMAVQLASANAAPGLLVIEAPMGEGKTEAALLAAEI 347 Query: 331 LIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSP-----NLILAHGNSRFNHLFQS 385 L + A V ALPTQAT+NAM R+ + L P ++ LAHG + + F S Sbjct: 348 LAARSGAGGVFLALPTQATSNAMFARV---VNWLRQVPREGVASVHLAHGKAALDDAFAS 404 Query: 386 I-----KSRAITEQG-QEEAWVQ-----------CCQWLSQSNKKVFLGQIGVCTIDQVL 428 + +I G EA V+ QWL + KK L V TIDQ+L Sbjct: 405 FLRAAPRLTSIDADGYAGEANVRRDRRAGSADMVAHQWL-RGRKKGILSPFVVGTIDQLL 463 Query: 429 ISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPM 488 + L +H +R L + V+++DEVHAYD YM+ LE VL V+LLSATLP Sbjct: 464 FTGLKSRHLALRHLAVAGKVVVIDEVHAYDAYMSVYLERVLSWLGAYRVPVVLLSATLPA 523 Query: 489 KQKQKLLDTYGLHTDPV--ENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPIC 546 ++Q L++ YG T + AYP++ + GA + P + R + E Sbjct: 524 DRRQALVEAYGGITSEALRDAREAYPVLTAVTI-GAPAQAVGTEPAE-GRRVDVNVE--A 579 Query: 547 LADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKE-LNNTQVDIDLFHARFT 605 D L L +R+ A G +I N V Q+L+E QV + H+RF Sbjct: 580 FDDDLGRLA--DRLEAELVDGGCALIIRNTVGRVLQTAQQLRERFGAGQVTV--AHSRFI 635 Query: 606 LNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGR 665 DR K+ +++ FG +G R I+VA+QV EQSLD+DFD L+T P DL+ QR+GR Sbjct: 636 DLDRARKDADLLARFGHDGARPRRHIVVASQVAEQSLDIDFDLLVTDLAPIDLVLQRMGR 695 Query: 666 LHRHHR 671 +HRHHR Sbjct: 696 VHRHHR 701 >UniRef50_Q6NEQ4 Putative helicase n=1 Tax=Corynebacterium diphtheriae RepID=Q6NEQ4_CORDI Length = 876 Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 218/759 (28%), Positives = 343/759 (45%), Gaps = 97/759 (12%) Query: 27 LIYHCLDVAAVADCWWDQSVV--LQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQ 84 L+ H LD AAVA WD + L+ F E+ S R + F + HDIGK FQ Sbjct: 20 LLAHLLDSAAVAGALWDHWLRQDLRQMFI-EELGSNAR--EIIQFVVGSHDIGKATPLFQ 76 Query: 85 YKSA---ESWLKLNPATPSLNG-----PSTQMCRKFNHGAAGLYWFNQDSLSEQ--SLGD 134 Y+ A E W + A PS+ + +K + G + EQ S Sbjct: 77 YQKAQKGEVWDSIRYAIDRTGRYQKPLPSSYLVKKTSGGP---------NRHEQWSSFAS 127 Query: 135 FFSFFDAAPHPYESWFPWVEAVTGHHGF---ILHSQDQDKSRWEMPASLASYAAQDKQAR 191 + + E+W A+ GHHG + + + Q K+ ++ S S A QD Sbjct: 128 KNEYLKPSAAAKENWIGL--AIGGHHGRFEPVGYGRHQRKAAEDLAKSGWSAAQQD---- 181 Query: 192 EEWISVLE-ALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFN-----ED 245 + LE A +T A L +++ P+ + +L+G LAD + S T +F+ +D Sbjct: 182 --LLRALEKASGITRASLP-SELSPELTLVLSGLTILADRISS---TESFVITGARMIDD 235 Query: 246 APSDINALRTYFQDRQQDASR-VLELSGLVSNKRCYE-GVHALLDNGYQPRQLQVLVDAL 303 + + + R+ D+ + V + G+ +E +H++L GY PR LQ + AL Sbjct: 236 GTLHLATPIDWLKTRKLDSEKHVAKTVGIYHGWNNHESAIHSIL-KGYDPRPLQTI--AL 292 Query: 304 PVAPGLTVIEAPTGSGKTETA-LAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASAS 362 GL + APTG+GKTE A L ++ K D+ +IF LPTQAT+NA++ R++ S Sbjct: 293 QNQVGLLNLMAPTGNGKTEAAILRHSLKENDR-----LIFLLPTQATSNAIMRRVQGIYS 347 Query: 363 HLFSSPNLI-LAHGNSRFNHLFQSIKS----RAITEQGQEEAWVQCCQWLSQ---SNKKV 414 +PN+ LAH + +Q+ S + Q E+ + + S S Sbjct: 348 ---DTPNVAALAHSLASVEDFYQTPLSVFDDHYDPSKEQFESSMSGGLYPSSFVCSGAAR 404 Query: 415 FLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQAD 474 L I + T+DQ L + LP K +R L + + +++DEVH D Y LLE +L A Sbjct: 405 LLAPICIGTVDQALATALPGKWIHLRILALANAHIVIDEVHTLDHYQTALLENILPILAK 464 Query: 475 VGGSVILLSATLPMKQKQKLLDTYG---LHTDPVENNSAYPLINWRGVNGAQRFDLLAHP 531 + + L+AT+P Q+ KLL YG L P + +P V Q L Sbjct: 465 LKTKITFLTATMPSWQRTKLLTAYGGEDLQIPP----TVFPAAE--TVLPGQFNRTLIDS 518 Query: 532 EQLPPRFSIQPEPICLADMLPDLTMLERMIAAANA-GAQVCLICNLVDVAQVCYQRLKEL 590 + F+++ D L + + NA A++ LICN V AQ L++ Sbjct: 519 DSTTIDFTMEETSY---DHLVESHVKWHQTTRLNAPHARIGLICNTVKRAQEIAAALEKT 575 Query: 591 NNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLI 650 N+ V L H+R T RR + S G NG R + V TQ +E SLD+D D L Sbjct: 576 NDRIV---LLHSRMTTEHRRRSAELLESLLGPNGNRKTITV-VGTQAIEASLDIDLDILR 631 Query: 651 TQHCPADLLFQRLGRLHRHHRKYRPAGFEI---PVATILLPDGEGYGRHEHIYSNVRVMW 707 T+ CPA L QR GR+ R + YR + P++ + + + E + ++ + Sbjct: 632 TELCPAPSLVQRAGRVWRRNDPYRSSRITADHKPISVVFIAEAEDWQVLPYLRAETS--- 688 Query: 708 RTQQHIEELNGASLFFPDAYRQWLDSIYDD-----AEMD 741 RTQ+ +E+ N +F P ++++D+ D +EMD Sbjct: 689 RTQRWLEKHN--QMFLPQMAQEFIDAATVDLDTATSEMD 725 >UniRef50_C4X9J1 CRISPR-associated Cas3 family helicase n=7 Tax=Bacteria RepID=C4X9J1_KLEPN Length = 871 Score = 186 bits (472), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 169/561 (30%), Positives = 252/561 (44%), Gaps = 65/561 (11%) Query: 218 SSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSG----L 273 + ++AG S+ADW+GS F N + Q Q + L +G + Sbjct: 194 ARVVAGLTSVADWIGS----GEFFENPE------------QAWQPVITAALNNAGFIKPV 237 Query: 274 VSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLID 333 + + V D +PR+ Q V PGL ++EA G GKTE AL A++++ Sbjct: 238 IRQGLSFADVFFPDDPPKKPREAQSRFIDQVVGPGLYILEAQMGMGKTEAALYAAYQMLV 297 Query: 334 QQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITE 393 Q+ A + FALPTQ T+N + R A + S+ + L S TE Sbjct: 298 QEKATGIYFALPTQLTSNKIYDRFNAFLHQIVSTET-------PQHALLLHSGAWLMDTE 350 Query: 394 QGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDE 453 G+E + W + K+ L V TIDQ L++V+ VKH F+R G+ V+I+DE Sbjct: 351 MGEEGS--PGGAWFNH-RKRGLLAPFAVGTIDQALMAVMNVKHGFVRAYGLAGKVVILDE 407 Query: 454 VHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPL 513 VH YD Y +L A+++ + +VI+LSATL ++ LL + AYPL Sbjct: 408 VHTYDLYTGTILNALVEFLRQIDCTVIILSATLSQTRRDALLQQS-------TTSEAYPL 460 Query: 514 INWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLI 573 I A+R L +P + + L D + E + A G QV I Sbjct: 461 IT--AAPSAERERGLVEI-GVP---VTENTTVILHSCRKDESAREEALRRAELGQQVLWI 514 Query: 574 CNLVDVAQVCYQRLKELN-NTQVDIDLFHARFTLNDRREKENRVISNFGKNG---KRNVG 629 N + AQ Y L + L H+RFT R E R ++ +G+ G ++ G Sbjct: 515 ENTIAEAQQTYLDLASRAVEAGCETGLLHSRFTPQHRNRHEQRWVALYGRAGWPQRKQCG 574 Query: 630 RILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAG-------FEIPV 682 RILV TQV+EQSLD+D D+L+++ P D+L QRLGRL RH R A + Sbjct: 575 RILVGTQVLEQSLDIDADFLVSRFAPTDMLLQRLGRLWRHTDTPRHASAKAECWLLSPSL 634 Query: 683 ATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDE 742 + L G +G +YS V+ R+ + + + SL P R +D Y + +E Sbjct: 635 ESALANPGSAFGMSAMVYSPY-VLCRSLEVWQAI--PSLSLPGDIRPLIDQTYTE-RAEE 690 Query: 743 PEW------VGNGMDKFESAE 757 W + NG +F S E Sbjct: 691 GTWATLLHELKNG-SRFRSGE 710 >UniRef50_D0WFD2 CRISPR-associated helicase Cas3 n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WFD2_9ACTN Length = 946 Score = 186 bits (471), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 194/668 (29%), Positives = 297/668 (44%), Gaps = 97/668 (14%) Query: 58 LSKQRVKAWLLFFIALHDIGKFDIRFQYK---SAESWLKLNPATPSLNGPSTQMCRKFNH 114 LS ++ + + ++HDIGK FQYK AES + P Sbjct: 28 LSDSAAESLVAWMASVHDIGKATPAFQYKVTDRAESVRETGLEIP--------------- 72 Query: 115 GAAGLYWFNQDSLSEQSLGDFFS---FFDAA-PHPYESWFPWVEAVTGHHGFILHSQD-Q 169 AG+ DS S +G FD A HP + F V V GHHG S Sbjct: 73 --AGI-----DSKSHAFMGQVILEDWLFDRAWSHP--NIFSCV--VGGHHGAPPDSSTIL 121 Query: 170 DKSRWEM-PASLASYAAQDKQARE--EWISVLEALFLTPAGLSINDIPPDCSSLLAGFCS 226 D R + P + + E ++ VL F L ++P LL Sbjct: 122 DNLRDSLLPKEVLGESTWTTVQIELLDYAFVLSGAFGHEGELKELELPQHTQVLLTALVI 181 Query: 227 LADWLGSWTTTNTFLFNEDAPSDINA-LRTYFQDRQQDASRVLELSGLVSNKRCYEGVHA 285 ++DW+ S + + +D A R ++ A+ V L G + R HA Sbjct: 182 MSDWIASNADLLPLVSGIASTADFRARAREAWERLALPAAWVPSLHGEPAEAR----FHA 237 Query: 286 LLDN-----GYQPRQLQVLVDALPVA-PGLTVIEAPTGSGKTETALAYAWKLIDQQIADS 339 DN +P Q+ + A + PGL +IEAP G+GKTE +L A L ++ + Sbjct: 238 RFDNIPEAARLRPAQILAVEAAESLEDPGLIIIEAPMGNGKTEASLLCAEILAEKFGSGG 297 Query: 340 VIFALPTQATANAMLTRMEASASHLF-----SSPNLILAHGNSRFNHLFQSIKSRAITEQ 394 + + LPT AT+NAM +R+E SH+ S ++ L H S N F S+++ T Sbjct: 298 IAYLLPTMATSNAMFSRVENWLSHMADADGSSRQSMQLLHSKSALNKDFASLRTWNHTWM 357 Query: 395 GQE----------EAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGI 444 G E + + QW K+ L V T+DQ+L++ L KH +R LG+ Sbjct: 358 GDERNQQRSKNPNDESIIAHQWFG-GRKRGLLASFVVGTVDQLLMAALKAKHVQLRHLGL 416 Query: 445 GRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLH--- 501 V+++DEVHAYD YM+ L+ V+ +LLSATLP +++++L+ Y Sbjct: 417 AGKVVVIDEVHAYDAYMSVYLDRVMTWLGAYRVPTVLLSATLPPQRRKQLIRAYRGKDAR 476 Query: 502 ----------TDP---VENNSAYPLINWRGVN-GAQRF---DLLAHPEQLPPRFSIQPEP 544 DP AYPL+ G + ++R+ ++ + + F + + Sbjct: 477 STGRPSKRRLIDPPRRATGEPAYPLVTVSGRDLDSERYCDCEVASRGTDVEISFLLDGDD 536 Query: 545 ICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARF 604 LA T+ +R+ + G C++ + V AQ Y+ LK + +V L H+RF Sbjct: 537 DLLA------TLRDRL----SDGGCACVLRDTVSRAQETYEFLKTAMDAEVR--LVHSRF 584 Query: 605 TLNDRREKENRVISNFGKNG-KRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRL 663 DR + ++ G N +R ++V TQV+EQSLD+DFD++IT P DLL QR+ Sbjct: 585 IAADRLSNDAELLKLLGPNASRRPRSLVVVGTQVIEQSLDIDFDFMITDIAPIDLLLQRM 644 Query: 664 GRLHRHHR 671 GRLHRH R Sbjct: 645 GRLHRHQR 652 >UniRef50_C7MQD2 CRISPR-associated helicase Cas3 n=1 Tax=Saccharomonospora viridis DSM 43017 RepID=C7MQD2_SACVD Length = 832 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 194/684 (28%), Positives = 278/684 (40%), Gaps = 86/684 (12%) Query: 27 LIYHCLDVAAVADCWW-DQSVVLQNTFCRNEM-LSKQRVKAWLLFFIALHDIGKFDIRFQ 84 L+ H D AA A W D + + NE+ ++ ++ + LHDIGK FQ Sbjct: 23 LVCHLCDTAAAALVLWEDHTAPGVREWVANELDMTPHEAGRFIAYLAGLHDIGKTTPGFQ 82 Query: 85 YKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPH 144 + + ++ H A + +L E SF H Sbjct: 83 CQDSTDKNSVD---------------TIRHEIAS--YLAVPTLIEHP-EKPASFISGIAH 124 Query: 145 PYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLT 204 E + GHHG + + +P + EW + + T Sbjct: 125 RIG------EILGGHHGVFPPVDRRTRKPLHVP----------ELGGPEWDTARRTIH-T 167 Query: 205 PAGLSINDIPPDC-----SSLLAGFCSLADWLGS---WTTTNTFLFNEDAPSDINALRTY 256 +N P C ++ L G +ADW+ S W + + DAP I A + Sbjct: 168 ELRAHLNPTLPTCLPQPVAAALTGLVIVADWIVSDARWILESQW----DAPIGIAARWEH 223 Query: 257 FQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPT 316 + + L L+ + + P Q ++ D P PGL I PT Sbjct: 224 TLNATRARVHQLGLAHPTPGPLDLARILGGPNRSPNPLQQSIIDDFHPTGPGLLTIATPT 283 Query: 317 GSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGN 376 GSGKTETA A KL + LPTQAT N+M R A+ + + LAH Sbjct: 284 GSGKTETAWIAAHKLATATDRYGTLMCLPTQATTNSMWARTSATVDN-----TVTLAHSM 338 Query: 377 SRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKH 436 + F+ ++ + +WL+ K+ L V TIDQ+L + L KH Sbjct: 339 AVFHSPYRHYSTHD----------PDALRWLN-GRKRPMLSAHAVVTIDQLLAAGLTAKH 387 Query: 437 RFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLD 496 +R + V+IVDEVHA D YM +L VL+ +G V+LLSATLP ++L Sbjct: 388 NMVRQWALTGKVVIVDEVHACDIYMLTVLARVLEWLGRLGVPVVLLSATLPGHVSRQLTA 447 Query: 497 TY---GLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPD 553 Y + P AYP W + G+ P + R I A + Sbjct: 448 AYLTGAGCSSPNPRPVAYPGWVWHPITGS--------PVEPRNRAQISRAHARTARVTVT 499 Query: 554 LTMLERMIAAANA-------GAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTL 606 AAANA G ++C+ VD AQ Y R+++ + + L H+RF Sbjct: 500 HYTGPVEAAAANAIQPVAKNGGCAAVVCSTVDTAQRIYIRIRD-TYPGMCVWLLHSRFPH 558 Query: 607 NDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRL 666 R E E ++S FG G R G ++VAT V+EQSLDVDFD +I++ P LLFQRLGR+ Sbjct: 559 AHRAEIEADIVSMFGPAGDRPDG-VVVATSVIEQSLDVDFDVMISELAPVALLFQRLGRV 617 Query: 667 HRHHRKYRPAGFEIPVATILLPDG 690 RH RPA P IL DG Sbjct: 618 WRHDNP-RPAWATEPTLHILDRDG 640 >UniRef50_B5GA96 Helicase n=1 Tax=Streptomyces sp. SPB74 RepID=B5GA96_9ACTO Length = 963 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 223/823 (27%), Positives = 337/823 (40%), Gaps = 106/823 (12%) Query: 9 HYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNT--FCRNEMLSKQRVKAW 66 H WGK+ ++ + L+ H D AV WD + + + + ++ Sbjct: 18 HLWGKADGL----DEAYPLVCHLFDTGAVVGALWDGWIGREQAGRLAASAGVEPDGFRSL 73 Query: 67 LLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYW----- 121 L F+ ALHDIGK + FQ K + +L + + F+H +AG +W Sbjct: 74 LCFWAALHDIGKISVPFQKKVTSLFDQLLAWESGARTTADEDSDSFHH-SAGSHWLLPAL 132 Query: 122 -----FNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEM 176 + D + + LG + + + GHHG I H ++ D+ Sbjct: 133 LAEIGYPADRRARRHLGHHVA----------------QLLGGHHG-IFH-EEMDQRFLRN 174 Query: 177 PASLASYAAQ---DKQAREEWISVLEALFLT-PAGLSINDIPPDCSSLLAGFCSLADWLG 232 P LA ++QAR V AL +T P +P + + ++ G LADWL Sbjct: 175 PRGLAPGLGGGFWEEQARRH---VRAALRVTQPVAPLAEMLPAETAVIVCGLIVLADWLA 231 Query: 233 SWTTTNTFLFNEDAPSDIN------ALRTYFQDRQQDASRVLELSGL---VSNKRCYEGV 283 S F + D++ AL +++ A VL +GL + + Sbjct: 232 SQAD-----FIKSRMPDVSWLATESALDEHWRSAVAAAPAVLAEAGLRPAAFKDASFAEM 286 Query: 284 HALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFA 343 A N Q L L D L PG+ ++ APTG GKTE ALA A L A + Sbjct: 287 FAFEPNDLQSSLLSGLPDEL-TGPGMILLTAPTGDGKTEGALAAAVGLARASGATGLGVV 345 Query: 344 LPTQATANAMLTRMEASASHLFSSPNLIL-AHGNSRFNHLFQSIKSRAITEQGQ-EEAWV 401 LPT AT +A R+ A + F+ + H + + + + A T+ A V Sbjct: 346 LPTMATTDAAHRRVAAFCAKAFAQDGAVTKVHSMAWLSRDAEVDAATAGTDATMGARADV 405 Query: 402 QCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYM 461 WLS + L V TIDQVL +VLPV++ +R L + VL++DE HAY +M Sbjct: 406 AAPAWLS-GRYRPHLAPAFVATIDQVLSAVLPVRYNVLRHLAVSGKVLVIDEAHAYGPWM 464 Query: 462 NGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTY------GLHTDPVENNSAYPLIN 515 + LL +L+ V+++SATL + LL Y GL P ++ A P Sbjct: 465 HALLLRLLEWLGAHRVPVVVMSATLAGETASSLLRAYRRGSAPGLPA-PADDECAVPYPG 523 Query: 516 WRGVNGAQRFDLLAHPEQLPPRFSIQ--PEPICLAD--MLPDLTMLERMIAAA-NAGAQV 570 WR V R H P R ++Q + AD L L +++ G Sbjct: 524 WRFVAADGRIGA-PHSFTTPRRHTLQIRTHAVPFADDPSAARLAKLRKLLEPVFRDGGNA 582 Query: 571 CLICNLVDVAQVCYQRLKELNNTQ-------VDIDLFHARFTLNDRREKENRVISNFGKN 623 ++C V AQ + L+E Q V + H+RF +DR R +++G Sbjct: 583 LVVCTTVADAQDTTEALREYAEEQQGDRPDPVPVATLHSRFAAHDRFRLSARCEADYGPR 642 Query: 624 GKRNVGR-------ILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRH------- 669 R+ R ILVATQVVEQSLD+DFD LIT H P LL QR GR RH Sbjct: 643 RPRDGSRTARPTASILVATQVVEQSLDLDFDMLITDHAPLALLLQRAGRCCRHAMLGDDP 702 Query: 670 HRKYRPA-----------GFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNG 718 H +RP+ I V ++ G G +Y + ++ RT+ + G Sbjct: 703 HAAHRPSWWSAHSTGGLTEVRIEVLDLVGKKGGFPGAARSVYGDGPLL-RTRNLLAARAG 761 Query: 719 ASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKR 761 L P+ + +D +Y D D ++ A+ E + Sbjct: 762 TPLRVPEDVQGAIDDVYADDFSDRLALTAAATERVGIADRESK 804 >UniRef50_Q5YRB2 Putative uncharacterized protein n=1 Tax=Nocardia farcinica RepID=Q5YRB2_NOCFA Length = 914 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 150/407 (36%), Positives = 203/407 (49%), Gaps = 30/407 (7%) Query: 292 QPRQLQV----LVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQ 347 PR LQ+ + D PV PGL V+EAP G GKTE ALA A L + + ALPT Sbjct: 274 HPRPLQLECLRVADVTPV-PGLMVVEAPMGEGKTEAALAAAEILAQRFGLGGIFVALPTM 332 Query: 348 ATANAMLTRMEASASHLFSSPN-LILAHGNSRFNHLFQSIKSRAITEQGQE--EAWVQCC 404 AT++AM R+ A +L P + LAHG + N F S+ R G + ++ V Sbjct: 333 ATSDAMFARVRKWAENLPVPPAAMFLAHGKAALNAEFTSLHRRGFVSIGTDCADSGVVAH 392 Query: 405 QWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGL 464 W KK L + V TIDQ+L + L +H +R L + V+++DEVHA D+YM+ Sbjct: 393 AWFV--GKKGPLANVVVGTIDQILRAALKTRHLMLRHLALANKVVVIDEVHAADSYMSTY 450 Query: 465 LEAVLKAQADVGGSVILLSATLPMKQKQKLL----DTYGLHTDPV-ENNSAYPLI-NWRG 518 L L+ A VILLSATLP Q++ L+ YG D V + YP I +W Sbjct: 451 LCRSLEWLAAYRVPVILLSATLPPSQREALVLAYARGYGTGDDEVCLTDHGYPAITHW-- 508 Query: 519 VNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTML-ERMIAAANAGAQVCLICNLV 577 N + A + I +A + DL +L ER+ A G ++CN V Sbjct: 509 PNPELSTTVAASGRSI--------AGIEIAHVADDLDVLAERVRQALADGGIAGVVCNTV 560 Query: 578 DVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGK--NGKRNVGR-ILVA 634 AQ Y L+ + ++ L H+RF + R E E R+ + G G R ++V Sbjct: 561 ARAQETYLALERAGFPEDELLLIHSRFVASHRAELEARLRAMLGPPDGGTVRPDRLVVVG 620 Query: 635 TQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIP 681 TQV+EQSLD+D D LIT P DLL QR+GRLHRH R RP P Sbjct: 621 TQVIEQSLDIDLDLLITDLAPMDLLLQRIGRLHRHDRPARPPKLVRP 667 >UniRef50_B6XT60 Putative uncharacterized protein n=2 Tax=Bifidobacterium RepID=B6XT60_9BIFI Length = 1045 Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 210/763 (27%), Positives = 304/763 (39%), Gaps = 123/763 (16%) Query: 11 WGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVV--LQNTFCRNEMLSKQRVKAWLL 68 WGK+++ + L H D AA+A WD V ++ R+ + ++ Sbjct: 22 WGKTNR--VDDTEWLPLYVHMADSAAMAVRIWDTWVPYGTKSIISRDLGNDDDLARKLMI 79 Query: 69 FFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLS 128 F +HDIGK FQ K + P SL Q G Sbjct: 80 FLAGVHDIGKATPVFQAKP----ISFGPDAESLAWKPEQAGLPMIAGLRDTSHPTHPIAG 135 Query: 129 EQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDK 188 + L +FS + V V GHHG DKS+ E + + D Sbjct: 136 QVILERYFSLVHKWGERESRQYACV--VGGHHG-----TPPDKSKLESARLGKTESGLDS 188 Query: 189 QAREEWISVLEALFLTPAG-----------LSINDIPPDCSSLLAGFCSLADWLGSWTTT 237 E W + L AG LS + L G +ADW+ S + Sbjct: 189 ---EVWTTTQNELIEFIAGTVGIGDEEWKLLSKKRFSAQSAVLATGLVIIADWIASNSDA 245 Query: 238 NTF-------LFNEDAPSDINALR-------TYFQDRQQDASRVLEL------SGLVSNK 277 + F L+++D P + + + Q R + A ++L + + S+ Sbjct: 246 DMFPLVRVHPLWDDDEPFGMTERKYDDIQSWSGLQRRAERAWACVQLPHAWKPANIPSSC 305 Query: 278 RCYEGVHALLDNGYQPRQLQ---VLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQ 334 + L G QPR +Q V V A GL +IEAP G GKTE ALA A L + Sbjct: 306 QDLFSTRFRLPEGAQPRPVQEQAVRVARDTDARGLLIIEAPMGEGKTEAALAAAEILAQR 365 Query: 335 QIADSVIFALPTQATANAMLTRMEASASHLFS-----SPNLILAHGNSRFNHLFQSI--- 386 + ALPT AT +AM +R+ L S + LAHG ++ N FQ I Sbjct: 366 TGRGGICVALPTMATTDAMFSRVHRWLDALPSCDSTDEKTVWLAHGKAKLNDDFQGIIAA 425 Query: 387 KSRAITEQGQEEA-------------WVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLP 433 R + GQ++ W+ KK L VCT+DQVL+ L Sbjct: 426 SRRHFSSVGQDDTDEPYSRKHGEISPETVVSDWI-WGRKKGALANFLVCTVDQVLMGALQ 484 Query: 434 VKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQK 493 +KH +R L + V+IVDE HAYD YM L+ L+ VILLSATLP Q+++ Sbjct: 485 MKHVVLRQLAMANKVVIVDECHAYDAYMREYLKMALEWLGSTRTPVILLSATLPESQREE 544 Query: 494 LLDTY--GLHTDPVE---------------------NNSAY----PLINWRGVNGAQRFD 526 + Y G +E N Y L+ RG++ + Sbjct: 545 MAKAYLKGWRNSKLELPSEAKRGGIQELKRRQLAAKNEKVYVNEPKLVQERGISSVHKVS 604 Query: 527 L------------LAHPEQLPPRFSIQPEPICLADMLPDL-TMLERMIAAANAGAQVCLI 573 + H + P S+ + D L ++L+R++ G V +I Sbjct: 605 SAYPVLTYTSDTEIKHMDVKPSGRSMNVRCQIVDDSDEALISLLDRLL---EDGGCVGVI 661 Query: 574 CNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGK-----NGKRNV 628 C+ V AQ + L + ++ + L H+RF DR E + G NG+R Sbjct: 662 CDTVGRAQHAAKLLSDYFGSEY-VKLTHSRFMDIDRMSNEAELRQLLGPDSTVGNGERPQ 720 Query: 629 GRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHR 671 I+V TQV+EQSLD+DFD L+T P DL+ QRLGR+HRH R Sbjct: 721 RMIVVGTQVLEQSLDIDFDTLVTDIAPVDLIMQRLGRVHRHRR 763 >UniRef50_D1A6Q2 CRISPR-associated helicase Cas3 n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1A6Q2_THECD Length = 933 Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 192/701 (27%), Positives = 290/701 (41%), Gaps = 83/701 (11%) Query: 27 LIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQ---RVKAWLLFFIALHDIGKFDIRF 83 ++ H +D AA+A WD R ++L ++ +++ + F+ LHDIGK F Sbjct: 14 VVCHLIDTAAIAGALWDVWTAGLGVL-RADVLGERVAAHMRSLVCFWAGLHDIGKVSPSF 72 Query: 84 QYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAP 143 Q + + KL T + + H Q L E + D+A Sbjct: 73 QVLVGDLYQKL--VTEASEYEQDEAISGLRHNE-----VTQWVLVEIFRALGYPAADSAR 125 Query: 144 HPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFL 203 + + GHHG + + + R ++Q R + E L Sbjct: 126 RDVGHQI--AQLLGGHHGRFCAAMRRPELRAPRSRPGVGRGVWEEQCRAHAAVLRE---L 180 Query: 204 TPAGLSIND-IPPDCSSLLAGFCSLADWLGSWTT-TNTFLFNEDAPSDINALRTYFQDRQ 261 T A + + +P + ++ G +ADWL S + + E + LR +++ Sbjct: 181 TGAREVLRERLPVPVAVVVLGIVIVADWLASQESFIVARMPGEGWEASPEELRAHWERAV 240 Query: 262 QDASRVLELSGLVSNKRCYEGVHALLDNGY-------QPRQLQV-LVDALPV---APGLT 310 DA +V+ +GL G L D + +P LQ ++ LP PGL Sbjct: 241 ADAPQVVRDAGL--------GRGLLEDRTFRELFGFDEPNPLQASVMKELPELVNGPGLV 292 Query: 311 VIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASH-LFSSPN 369 + AP G GKTE AL A L A+ + F LPT AT +AM R+ A L Sbjct: 293 LCTAPPGDGKTEAALYAAGVLARACGANGLGFCLPTMATTDAMHKRVSRFARRALREDAA 352 Query: 370 LILAHG----NSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTID 425 L H +S + + EA + QWL + ++ L + TID Sbjct: 353 LTKVHSMAWLSSDAAGDAAAGAAGGDAVITDAEASTEAAQWL-HAGRRGLLAPLTTFTID 411 Query: 426 QVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSAT 485 Q L VLPVK+ +R + + V+++DE H+YD +M+ LL L+ + VILLSAT Sbjct: 412 QGLTGVLPVKYNVLRLMAMAGKVVVIDEAHSYDAWMHALLLRWLEWLGALRAPVILLSAT 471 Query: 486 LPMKQKQKLLDTY---GLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQP 542 L + L++ Y HT P E YP G A HP P + + Sbjct: 472 LTGAAARSLVEAYLRGAGHTVPQELRPCYP-----GWLFADAVTGTVHP---PREVTSER 523 Query: 543 EPICLADMLP------------DLTMLERMIAAANAGAQVCLI--CNLVDVAQVCY---- 584 E +M+P L +++ ++A G + C++ C V AQ Y Sbjct: 524 ERAVAFEMVPVRRGKDPSRPGHRLAVIKDLLAQVVNGDRGCVLVCCTTVPEAQDTYRYLA 583 Query: 585 ---QRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQS 641 +R+ E ++ L H+R+ DR +FGK G R +LVATQ+VEQS Sbjct: 584 DWFRRVAEEGGRPPELRLLHSRYRARDRAAITEACERDFGKEGGRPR-TVLVATQIVEQS 642 Query: 642 LDVDFDWLITQHCPADLLFQRLGRLHRH-------HRKYRP 675 LD+DFD LIT P LL QR GR RH HR+ RP Sbjct: 643 LDLDFDLLITDLAPMALLLQRSGRCQRHRDGRIDLHRERRP 683 >UniRef50_C5V9N6 Putative helicase n=1 Tax=Corynebacterium matruchotii ATCC 14266 RepID=C5V9N6_9CORY Length = 894 Score = 165 bits (417), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 175/649 (26%), Positives = 278/649 (42%), Gaps = 91/649 (14%) Query: 61 QRVKAWLLFFIALHDIGKFDIRFQYKSAESW--------------LKLNPATPSLNGPST 106 + V L+ LHDIGK + FQ ++ + L ++P S + Sbjct: 57 EHVDKLLMLVAGLHDIGKANPHFQQQNKQQGETFTAIRENLRRHGLTVSPDYMSYFSETR 116 Query: 107 QMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHS 166 M R NH A L D + DAA +SW A+ GHHG Sbjct: 117 AMRRHENHSAIILD------------EDIETDMDAA----DSWLAL--ALVGHHGKFAAF 158 Query: 167 QDQDKSRWEMPASLASYAAQDKQAREE--WISVLEALFLT---PAGLSINDIP----PDC 217 + ++ + KQ + W + +AL G+S +++P P Sbjct: 159 NPTRATDLKI--------TKIKQIFDTTPWGKIHKALIAQVELGVGMSRDELPDHVSPTV 210 Query: 218 SSLLAGFCSLADWLGS---WTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELS-GL 273 + L++G LAD + S WT T +E S + + + R ++ +++ + GL Sbjct: 211 TVLISGLVVLADRIASQLDWTQTAQREMDEGIIS-LADPKQWVTHRAAESVEIIKKTVGL 269 Query: 274 VSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLID 333 N E A + +G+ PR Q AL GL + A TGSGKTE AL L Sbjct: 270 YQNWSTREAARADILDGFPPRFAQAA--ALEQGDGLWNVMAATGSGKTEAAL-----LRH 322 Query: 334 QQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQ---SIKSRA 390 + +IF LPTQAT NA++ R++ + + +L AHG + + S+ Sbjct: 323 ATRNERLIFLLPTQATTNAIMRRVQKAFKGTTNVASL--AHGLAITEDFYSQNISVSDVM 380 Query: 391 ITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLI 450 + + Q+ + +++ +S L + V T+DQ ++ LP K +R L + + ++ Sbjct: 381 VGDNYQDNGGLFPTEFV-KSGASRLLAPVCVGTVDQAILGSLPTKFNHLRLLALANAHVV 439 Query: 451 VDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLH-TDPVENNS 509 +DEVH D Y + LLE +L A + L+AT+P Q++K Y H +DP S Sbjct: 440 IDEVHTLDAYQSELLEDLLHWWAATHTPITFLTATMPAWQQEKFKQAYSKHDSDPARFPS 499 Query: 510 AYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAA------ 563 W +G + + + P P I EP + D+ D ++++ + Sbjct: 500 ---FTTWLPRSGDE---IDSDPATDAPPVVIPTEPYTI-DLTVDPVPYDQLVDSHIRWIQ 552 Query: 564 ----ANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISN 619 A A++ +ICN VD AQ Q L H+R T RR + + Sbjct: 553 AQRQAYPQARIGIICNTVDRAQAIVQAFDHEKPV-----LLHSRMTAEHRRRNAEELEQS 607 Query: 620 FGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHR 668 GKNG+ ++V TQ +E SLD+D D L T+ CPA+ L QR GRL R Sbjct: 608 IGKNGEATT-VLVVGTQAIEASLDIDLDALRTELCPAESLIQRAGRLWR 655 >UniRef50_C4ZJX7 CRISPR-associated helicase Cas3 n=2 Tax=Betaproteobacteria RepID=C4ZJX7_THASP Length = 876 Score = 162 bits (409), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 169/557 (30%), Positives = 243/557 (43%), Gaps = 82/557 (14%) Query: 206 AGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDAS 265 GL + D P + AG LADWLGS T F D N+ ++ A Sbjct: 197 GGLPLPDTP-RFAHYFAGLVQLADWLGSDTRFFPFTNVGDRDRIGNS-----RELASTAV 250 Query: 266 RVLELSGLVSNKRCYEGVHALLD--NGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTET 323 R + L KR + D + P Q + P + V+EA TGSGKTE Sbjct: 251 REIGLDPEPCRKRFEQASPDFGDVFDTTTPYPAQSAMSD-PALGQVVVLEAETGSGKTEA 309 Query: 324 ALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHL--------------FSSPN 369 AL L + D + FALPT+ A+ R+ + S +++ + Sbjct: 310 ALWRYLHLFARGAVDGLYFALPTRVAASQAYRRVREALSRAWPEGAPLAVRALAGYAAAD 369 Query: 370 LILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLI 429 A F L+ S A E G+ +W +S+K+ + V T+DQ L+ Sbjct: 370 GETARALPDFKVLWSDDPSDA--EAGR--------RWAGESSKRFLAAPVAVGTVDQALL 419 Query: 430 SVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMK 489 L VKH +R RS+L++DEVHA D YM L+E ++ AQ +GG +LLSATL Sbjct: 420 GTLQVKHAHLRHALTARSLLVIDEVHASDAYMAVLIEQLINAQIALGGHTLLLSATLGAA 479 Query: 490 QKQKLL---DTYGLHTDPVENNSA--YPLIN--W--RGVNGAQRFDLLAHPEQLPPRFSI 540 + + L + H + S YP I+ W R +GA R R + Sbjct: 480 ARTRYLAAGNRKAQHLPSLAQASGLPYPAISDAWGIRSTSGAPR----------EKRVAW 529 Query: 541 QPEPICLADMLPDLTMLERMIAAANA-GAQVCLICNLVDVAQVCYQRLKE-------LNN 592 Q E D + D + + A GA+V +I N V A L+ L N Sbjct: 530 QCE-----DAIDDPQRVAALALEAAEQGARVLVIRNTVPAAVATLAALEAATPNVTWLFN 584 Query: 593 TQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQ 652 I L H+RF+ DR + V + GK G+ + I+V TQ +EQSLD+D D+LIT Sbjct: 585 RDGVITLHHSRFSREDRLMLDATVEAQLGK-GRSSGPLIVVGTQTLEQSLDLDADFLITD 643 Query: 653 HCPADLLFQRLGRLHRHHR--KYRPAGFEIPVATILLPDG-----------EGYGRHEH- 698 CP D+L QR+GRLHRH R + RP F +L P+G G GR Sbjct: 644 LCPMDVLLQRIGRLHRHMRPVEARPNAFREARVLVLTPEGGDLTPCLTRPRHGLGRFHDG 703 Query: 699 --IYSNVRVMWRTQQHI 713 +Y++ R++ T++ I Sbjct: 704 GGVYADTRILEATRKLI 720 >UniRef50_C8XAY8 CRISPR-associated helicase Cas3 n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XAY8_NAKMY Length = 918 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 129/404 (31%), Positives = 183/404 (45%), Gaps = 55/404 (13%) Query: 305 VAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEA---SA 361 PGL +IEAP G GKTE ALA L ++ +IFALPT AT++AM+ R A Sbjct: 258 TGPGLMIIEAPMGEGKTEAALAAGEVLAERFGCGGLIFALPTMATSDAMVDRFTGWLRGA 317 Query: 362 SHLFSSPNLILAHGNSRFNHLFQSIKSRAITE-----QGQEEAWVQCCQWLSQSNKKVFL 416 + S+ LAH + N F ++++ + T G +WL+ KK L Sbjct: 318 AQ--SAQPFFLAHSKAPLNPTFAAMRTLSPTTGDGGVDGCGAGVAVALEWLT-GRKKGML 374 Query: 417 GQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVG 476 + TIDQVL + L +H +R L + V+++DEVHA D YM L VL+ G Sbjct: 375 ANFVIGTIDQVLYAALRGRHVALRHLALAGKVVVIDEVHAADVYMAVFLRDVLRWLGAYG 434 Query: 477 GSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAY-------------------PLINWR 517 VILLSATLP ++Q+LL+ Y P S P + Sbjct: 435 VPVILLSATLPAARRQELLNAYSTGARPATPASPTARASRRRRPRALTSAGPPPPSCDEA 494 Query: 518 GVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMI---------------- 561 +G + LA LP + + P L R + Sbjct: 495 TASG----EGLAGAGPLPYPLITIAGAGSMVQVAPAAAGLARTVRVEFASDDESELVDLV 550 Query: 562 -AAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNF 620 AA+ G V +I N V AQ L+ +V + L H+R+ DR ++ +++ Sbjct: 551 RAASQGGGVVGIIRNTVGRAQRSAAVLRAELGEEV-VTLTHSRYLATDRMRRDRDLLAEL 609 Query: 621 GKNG--KRNVG-RILVATQVVEQSLDVDFDWLITQHCPADLLFQ 661 G G +R G RI+V TQV+EQSLD+DFD L+T PADL+ Q Sbjct: 610 GAPGQARRMPGPRIVVGTQVLEQSLDIDFDLLVTDLAPADLILQ 653 >UniRef50_B0LU92 CRISPR-associated helicase Cas3 n=2 Tax=Streptomyces RepID=B0LU92_9ACTO Length = 1002 Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 130/438 (29%), Positives = 192/438 (43%), Gaps = 68/438 (15%) Query: 306 APGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLF 365 PGL V+EAP G GKT+ AL A L + AD V +PTQAT++ M ++ A L Sbjct: 308 GPGLLVVEAPMGEGKTKAALMAAEILAARFGADGVFVGMPTQATSDPMFGQVRAWLQALG 367 Query: 366 SSPNLI----LAHGNSRFNHLFQSI---KSRAITE------------------------Q 394 +L L HG FN ++ + + R E Sbjct: 368 RGDDLASQVALLHGKRMFNKEWRGLVEGRERVGGEFGFAGVDEFGCEGDVYGMGGQARGV 427 Query: 395 GQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEV 454 G+ +W + K+ L V T+DQ+L++ +H +R G+ V+++DEV Sbjct: 428 GERSGAGGPAEWFLGA-KRGLLCPFVVGTVDQLLLAATRSRHVMLRMAGLAGKVVVLDEV 486 Query: 455 HAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTY--------GLHTDPVE 506 HA D YM+ L L+ G V+LLSATLP Q+++L++ Y L + + Sbjct: 487 HAADVYMSQFLVEGLRWLGQAGVPVVLLSATLPPGQRRELVEAYVAGAGSREELRLEALP 546 Query: 507 NNSAYPLIN--WRGVNG-AQRFDLLAHPEQLPPRFSI------QPEPICLADML------ 551 YP + W V G R D E P S+ +P P A + Sbjct: 547 EPGGYPSVTSAWSAVEGPCVRVDSC---EGWRPDLSVALAVCSEPVPGPRASRVQERQAQ 603 Query: 552 --PDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDR 609 D+ +++ + A G ++ N V AQ Y L + ++ L H R R Sbjct: 604 EEADVAVVDLLRAQLEGGGCALVVRNTVARAQSLYSALAGVFGAG-EVMLLHGRLAAGAR 662 Query: 610 REKENRVISNFGKNGKRNVGR------ILVATQVVEQSLDVDFDWLITQHCPADLLFQRL 663 E+ R + G +G VG ++VATQ+ EQS DVD D L++ P DLL QR+ Sbjct: 663 AERTERCLGLLGVSGP-GVGEGRPRRLVVVATQLAEQSFDVDVDLLVSDVAPVDLLLQRI 721 Query: 664 GRLHRHHRKYRPAGFEIP 681 GRLHRH + RP G +P Sbjct: 722 GRLHRHGDRVRPPGLVVP 739 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 10/115 (8%) Query: 11 WGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLS----KQRVKAW 66 WGKS++ G +LL+ H LD AAVA+ WD + +E+ +R+ AW Sbjct: 27 WGKSAER--AGGQTNLLLSHLLDTAAVAERLWDSFLAPSTRGLLDEVSGGPGRGRRLFAW 84 Query: 67 LLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPST-QMCRKFNHGAAGLY 120 L A+HD+GK FQY+ + A +GP+ R++ H A Y Sbjct: 85 L---CAVHDLGKATPAFQYQWEPGARAVRAAGLRWHGPTVANQKRRWRHEHASAY 136 >UniRef50_Q1EQS5 CRISPR-associated helicase n=2 Tax=Streptomyces RepID=Q1EQS5_STRKN Length = 990 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 220/838 (26%), Positives = 327/838 (39%), Gaps = 117/838 (13%) Query: 8 CHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQ--SVVLQNTFCRNEMLSKQRVKA 65 +WGK + + ++ H LD AAV WD + L ++ ++ Sbjct: 24 ARFWGKEREL----PHPYPVVCHLLDTAAVFGVLWDVLLGAEVHERVSEALGLRVEQARS 79 Query: 66 WLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQD 125 L F+ LHD+GK FQ + ES+ L P + R F H A +W Sbjct: 80 VLSFWAGLHDLGKITPPFQAQVPESFAGLRADAAYRFAPGAEKERAFRHEMA-THWSLTQ 138 Query: 126 SLSEQSL-GDFFSFFDAAPHPYESWFPWVEAVTGHHG---FILHSQDQDKSRWEMPA-SL 180 L E D A H + + GHHG +L S++ ++ P Sbjct: 139 LLGEAGYPADGRLMRRAVSHQV------AQLLGGHHGSFGAVLLSKELSRASEYRPGLGE 192 Query: 181 ASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTF 240 +AAQ + E V A + GL P + + + G +ADWL S Sbjct: 193 EGWAAQRRAHFAELRRVTGADAVPTQGL-----PAELAVSVTGLVVVADWLASQRGAIVP 247 Query: 241 LFN----EDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDN------- 289 L + P +++A R Q A+ GLV+ R A D Sbjct: 248 LMPPVGWQGRPEELDA----HWSRTQAAA-----VGLVAKARLG---RARFDAERFEEMF 295 Query: 290 GYQPRQLQV-LVDALPV-----APGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFA 343 + P LQ L + LP PGL ++ APTG GKTE AL A L A + FA Sbjct: 296 PFSPNALQGDLAERLPRLVGERGPGLLLVTAPTGDGKTEAALYAASVLGRAANARGLYFA 355 Query: 344 LPTQATANAMLTRM-EASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEA--- 399 LPT ATA+AM R+ + +A L L L H + + + + G A Sbjct: 356 LPTMATADAMFPRVRDFAAEALEGERALTLLHSMAWLSPAYAQDEQAPEVSDGAVSADPA 415 Query: 400 -WVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYD 458 + WL + +K+ L +GV TIDQ L +VLP+++ +R G+ V +VDE HAY Sbjct: 416 TATEAGTWL-RGSKRGLLAPLGVGTIDQTLAAVLPLRYNALRLFGLSDKVFVVDEAHAYG 474 Query: 459 TYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTY---GLHTDPVENNSAYPLIN 515 +M+ LL +L+ V+LLSATL + L+D Y +P AYP Sbjct: 475 PWMHQLLSRLLEWLGAFRAPVVLLSATLTGRTAASLVDAYRRGAGFLEPSAVEPAYP--G 532 Query: 516 WRGVNGAQRFDLLAHPE----QLPPRFSIQPEPICLADML-PDLT---------MLERMI 561 W + R ++ P Q I P+ M P T + E + Sbjct: 533 WLFTD--SRTGKISRPRTVTSQRARTLDIDLRPVAWDAMEGPAATPRTEGRRAALREVLR 590 Query: 562 AAANAGAQVCLICNLVDVAQVCYQRL----KELNNTQVDIDLFHARFTLNDRREKENRVI 617 A G + C V AQ ++ L EL + + L H+R+ R+ Sbjct: 591 PVAEEGGTALVCCTTVAEAQQTFRDLCTAFPELALREGGLRLLHSRYPAFARQRITADCE 650 Query: 618 SNFGK------NGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQ---------- 661 +GK ILVATQVVEQSLD DFD +++ P L Q Sbjct: 651 EAYGKLRGDLEAAPPRPASILVATQVVEQSLDFDFDVVVSDLAPVAQLLQRAGRGRRHAR 710 Query: 662 -RLGRLHRHHRKYRPAGFEIPVATILLP-DGEGYGRHEHIYSNV---RVMWRTQQHIEEL 716 + GR H + R P+ +L P DG+G + V ++ RT + E Sbjct: 711 GKAGRPPWAHLEDR------PLLVVLEPVDGDGKTAVPRTWGAVYDAGLLRRTALLLAEQ 764 Query: 717 NGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEY 774 + PD + +D++Y + +D G+D E + R + AEE+ Sbjct: 765 TRTGIAIPDGVQSLVDAVYAEDFVD-------GLDAAARLELRRMDSERAAGEIAEEH 815 >UniRef50_Q0BRG2 Superfamily II DNA and RNA helicase n=1 Tax=Granulibacter bethesdensis CGDNIH1 RepID=Q0BRG2_GRABC Length = 857 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 123/427 (28%), Positives = 203/427 (47%), Gaps = 45/427 (10%) Query: 289 NGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQA 348 G + R +Q + L + L +E+ TGSGKTE A +L + D + FA+PT+A Sbjct: 260 EGTKLRPMQQALLELSLDIRLAALESETGSGKTEAAFLRFLRLFRAGLVDGLYFAVPTRA 319 Query: 349 TANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWV------- 401 A + R+ + F + G ++ S G W Sbjct: 320 AAAQLHRRINHAVQAAFGGECFLALPG------YMKAGTSEGWALPGYRVEWADNPDEAQ 373 Query: 402 QCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYM 461 + +W ++++++ + V T+DQV+++ L VK R + RS L++DEVHA D+YM Sbjct: 374 KQARWAAETSRRFLAAPVAVGTVDQVMLAGLQVKWSHFRSAALARSYLVIDEVHASDSYM 433 Query: 462 NGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLH-TD---PVENNSAYPLINWR 517 + +++ +++ GG +L+SATL + LL TD PV ++ YP ++W Sbjct: 434 SAVMDRIVQNHVAHGGHALLMSATLGSATRASLLGARKKRKTDSHSPV--HAPYPSLSW- 490 Query: 518 GVNGAQR--------FDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQ 569 G +R DL + + + S+ P+ +AD M + AA GA+ Sbjct: 491 -AEGEERRKQEIHLGIDLTEYQKAV----SVNAAPL-IADPHAIAGM---ALEAARQGAR 541 Query: 570 VCLICNLVDVAQVCYQRLKELNNTQVDIDL------FHARFTLNDRREKENRVISNFGKN 623 V +I N VD + ++ L+ + + H+RF DR ++ V GK+ Sbjct: 542 VLVIRNTVDQVIATQRAIEALDAHAPTLSVNGIRCPHHSRFAAEDRLLLDHAVEQAMGKH 601 Query: 624 GKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKY-RPAGFEIPV 682 GRI+ +Q VEQSLD+D D++IT CP D+L QR+GRLHRH ++ RP F Sbjct: 602 SVPG-GRIVCGSQTVEQSLDIDADFMITDLCPIDVLLQRIGRLHRHAGRHDRPDAFRNAR 660 Query: 683 ATILLPD 689 +L+P+ Sbjct: 661 CVVLIPE 667 >UniRef50_A8M400 CRISPR-associated helicase Cas3 n=1 Tax=Salinispora arenicola CNS-205 RepID=A8M400_SALAI Length = 986 Score = 145 bits (365), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 153/517 (29%), Positives = 235/517 (45%), Gaps = 64/517 (12%) Query: 213 IPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDAS-RVLELS 271 +P LL +ADW+ S + F ++ SD L+ +++ R ++ + Sbjct: 206 LPQPVQVLLTAIVIVADWIASNEQFFPYGFRQEDASD--RLQQAWEELDLPTPWRAVDTT 263 Query: 272 GLVSNKRCYEGVHALLDNGYQPRQLQVLV----DALPVAPGLTVIEAPTGSGKTETALAY 327 G+ + + + + G QP +Q V A+P+ PGL ++EAP G GKTE ALA Sbjct: 264 GVDAAR--FLAQRFKMPPGAQPYPVQAAVLEQARAMPL-PGLLIVEAPMGEGKTEAALAA 320 Query: 328 AWKLIDQQIADSVIFALPTQATANAMLTRMEASASHL------FSSPNLILAHG----NS 377 L + A ALPT+AT++AM +R+ S L + LAHG N Sbjct: 321 VEVLAGRSGAGGCFVALPTRATSDAMFSRVLGWLSRLPDADVGRGAREAALAHGKAILND 380 Query: 378 RFNHLFQSIKSRAI-TEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKH 436 ++ L++ + AI ++G V WL+ +K L V TIDQ+L + L +H Sbjct: 381 EYSRLYRGMLPSAIGVDEGGTA--VAAHGWLAGRKRK-MLSSFVVGTIDQLLFAALQARH 437 Query: 437 RFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLD 496 +R LG+ V++VDE HAYD YM+ L+ L+ G V++LSATLP ++ ++ Sbjct: 438 VALRHLGLAGKVVVVDEAHAYDVYMSQYLDRALEWLGAHGVPVVVLSATLPAHRRADMMQ 497 Query: 497 TYGLH---------------------TDP---VENNSAYPLINWRGVNGAQRFDLLAHPE 532 Y + TD + + YPL++ V+G R P Sbjct: 498 AYDVGRFGPRRGARRRRRFRAGSDEATDDDQVLRDERRYPLLS---VSGVDRV-----PT 549 Query: 533 QLPPRFSIQPEPICLADMLPDLTML-ERMIAAANAGAQVCLICNLVDVAQVCYQRLKELN 591 + S + + L DL L +R+ G V ++ N V L+ L Sbjct: 550 TVGCAASGRSFDVRLERSDDDLAALADRLRTDLTDGGCVLVVRNTVARVLETADELRRLL 609 Query: 592 NTQVDIDLFHARFTLNDRREKENRVISNFGK-------NGKRNVGRILVATQVVEQSLDV 644 ++ + + H+RF DR K+ + FG R ++VA+QV EQSLD+ Sbjct: 610 GPKIPVSVAHSRFMAADRAAKDTWLRDTFGPPEHLTEWGRARPACHVVVASQVAEQSLDI 669 Query: 645 DFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIP 681 DFD L+T P DL+ QRLGRLHRH R RP P Sbjct: 670 DFDLLVTDLAPVDLILQRLGRLHRHRRAVRPGRLAQP 706 >UniRef50_UPI0001AF1D47 CRISPR-associated helicase Cas3 n=1 Tax=Streptomyces ghanaensis ATCC 14672 RepID=UPI0001AF1D47 Length = 782 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 164/688 (23%), Positives = 276/688 (40%), Gaps = 112/688 (16%) Query: 47 VLQNTFCRNEMLSK----QRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLN 102 VL CR E+ W+ +HD+GK FQ L+ + A P++ Sbjct: 9 VLVGPHCRAELDRAFGPLGDAVGWVSVLCGVHDLGKLSPTFQG------LREDIAAPAMG 62 Query: 103 GPSTQMCRKFNH--GAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHH 160 + R+ G + L+ + + P + W A+ GHH Sbjct: 63 PVAAGYIRRLTRWRGPGARTDCHHGLLTAVHMARILKAWGTVPATART-IAW--ALGGHH 119 Query: 161 GFILHSQDQDKSRWEMPASLASYAAQDKQAREE--------WISVLEAL---------FL 203 G I AA +QARE W V + L Sbjct: 120 GVI------------------PSAASVRQAREAVGDHGGPWWAGVCDDLVRRVVALWGLP 161 Query: 204 TPAGLSINDI--PPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQ 261 P GL+ ++ P+ LAG S++DW+ S ++ L Y + + Sbjct: 162 EPEGLAWGEVRLSPEAVVALAGLTSVSDWIASARPEKDYVGTG------VELAGYLRQAR 215 Query: 262 QDASRVLELSGLVSNKRCYE-GVHALLDNGYQPRQLQVLVDALP---VAPGLTVIEAPTG 317 D +R +E + E G AL +P +Q V+ + G+ V+ APTG Sbjct: 216 WDEARKIERLAWRGWRPPRETGFRALFPLEGRPHPVQEAVETVVGRMRGSGIVVVAAPTG 275 Query: 318 SGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLF-SSPNLILAHGN 376 GKT+ AL A L+ + A+P++ T+N +E + L +P + L H Sbjct: 276 EGKTKAALQAAATLVRRFGLRGFYVAMPSRVTSNQAFDAVEQLLAGLGEKAPPVRLLHSA 335 Query: 377 SRFNHLFQSIKSRAITEQGQE-------------EAWVQCCQWLSQSNKKVFLGQIGVCT 423 + +K R G E + + +W + +K+ L +GV T Sbjct: 336 A-----GDYLKDRRAPADGAEGLRPVGVDVDGQDDGDGEAAEWFA--HKRGLLAPLGVGT 388 Query: 424 IDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLS 483 +DQ L++ L H F+R G+ V++ DEVH YD +M+ L++ +L + V+LLS Sbjct: 389 VDQALMAALRSSHVFVRLAGLSGKVVVFDEVHGYDVHMSTLMDRLLWWLGRLRVPVVLLS 448 Query: 484 ATLPMKQKQKLLDTY---GLHTDPVENNS----AYPLINWRGVNGAQRFDLLAHPEQLPP 536 ATLP +++ L++++ P+E + AYP + W + L Sbjct: 449 ATLPARRQHALVESWRAGAAGRIPLEVEAPAAQAYPRVAWADTESDAVETVGVEASLLNS 508 Query: 537 RFSIQPEPICLADMLPDLTMLER---MIAAANAGAQVCLICNL----VDVAQVCYQRLKE 589 +++ L + R + A+AG V ++ NL V+ + QR++ Sbjct: 509 DRTVE---------LVRVGFEARAAWAVEQASAGRCVAVVHNLVRHAVEAHEQILQRVER 559 Query: 590 LN-NTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVG-----RILVATQVVEQSLD 643 L + ++ L HA+ +R E + + FG+ R I+V TQ++E+ LD Sbjct: 560 LPVEERPEVFLLHAKLLQAERARVEAEIRAKFGRPDDREEDLRPRRAIVVGTQLLEEGLD 619 Query: 644 VDFDWLITQHCPADLLFQRLGRLHRHHR 671 DFD +++ P D L QR+GR+ RH R Sbjct: 620 ADFDVMVSSVAPIDSLIQRMGRIQRHDR 647 >UniRef50_C2KP49 Helicase n=1 Tax=Mobiluncus mulieris ATCC 35243 RepID=C2KP49_9ACTO Length = 907 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 191/743 (25%), Positives = 304/743 (40%), Gaps = 98/743 (13%) Query: 11 WGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQ------SVVLQNTFCRNEMLSKQRVK 64 WGK SK+ + L+ H D A A+ +D +L+N F + V Sbjct: 9 WGKYSKNY----GFYPLLAHLYDTAVCAEIVFDYWLRPGLQEILKNDFG-------ESVL 57 Query: 65 AWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWF-- 122 + LHD+GK + FQ + A + N P + FN A Y+ Sbjct: 58 QVVSLVAGLHDLGKGNPVFQGQQAA--YETNKDLPVIR-------EHFNQFANTEYFIDV 108 Query: 123 -----NQDSLSE-QSLGDFFSFFDAAP----HPYESWFPWVEAVTGHHGFILHSQDQDKS 172 N+ S+ + +G F D + E W V V GHHG D Sbjct: 109 KRREANRPSVRRHEQVGALDLFGDESKLFKDRVTEHWLAAV--VAGHHGTFFRETKSDDE 166 Query: 173 RWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIP----PDCSSLLAGFCSLA 228 R ++ ++ + K RE+ S++E GL I D+P P LL G ++A Sbjct: 167 R-QIDSTKLLRSGVWKTVREDSTSLIERF----CGLHIADLPRVISPISLMLLTGLVTVA 221 Query: 229 DWLGS---WTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHA 285 D L S W + S N Q+ +RV L G+ Sbjct: 222 DRLSSGDDWVAEQAAALKSGSISLDNPDEWKSYIFQKMLNRVKLLLGIFE---PLSNAQE 278 Query: 286 LLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALP 345 L + PR Q + A G+ I + TGSGKTE AL L ++ +IF LP Sbjct: 279 TLLGCWNPRPAQKI--AQNSGDGMLTIMSATGSGKTEAAL-----LRHANASERLIFLLP 331 Query: 346 TQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLF-QSIKSRAITEQGQEEAWVQC- 403 TQAT NAM+ R++ + + +S LAHG + + + Q I + + V Sbjct: 332 TQATTNAMMRRLQEAFQN--TSNVGTLAHGMAILENFYSQKITVTEHRDDSTDTGDVSAR 389 Query: 404 ----CQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDT 459 +++ Q + + L + V T+DQ +++ LP+K +R L + S +++DEVH Sbjct: 390 GLYPTEFVRQKSAR-LLAPVVVATVDQAVMASLPMKWTALRLLALANSHVVMDEVHTLSP 448 Query: 460 YMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYG-----LHTDPVENNSAYPLI 514 Y L+E ++ G V LLSAT+P + ++L + Y +T +E +P Sbjct: 449 YQTRLIEPLMTWLGRTGTRVTLLSATMPHEHLEQLTNAYTGNLSHENTTRIEEYD-FPAT 507 Query: 515 NWRGVNGAQRFDLLA---HPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVC 571 V G + L + +Q + ++ E +++ D + I A++ Sbjct: 508 ASVSVGGKVKVSALKIDINRDQYQINYDLK-EVSNISEAHIDWA---KQIHEKYPKARLG 563 Query: 572 LICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRI 631 + N +D AQ L +L ++ + H+R T R E E + + G G G + Sbjct: 564 VFVNTIDRAQEIAGGLLKLG---CNVMVLHSRLTAKHRSEVEEALFNALGPRGNAE-GLV 619 Query: 632 LVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHH---RKYRPAGFEIP----VAT 684 +V TQ +E SLD+D D + T PA L QR GR R R+ R G VA Sbjct: 620 VVGTQAIEASLDIDLDLISTDLAPAPSLLQRFGRAWRRQDTKREQRIPGMSAMQVQIVAG 679 Query: 685 ILLPDGEGYGRH---EHIYSNVR 704 +L+ + GY ++YS +R Sbjct: 680 MLIDENAGYQEKWWIPYLYSPLR 702 >UniRef50_UPI000190E95D hypothetical protein SentesTyph_16158 n=2 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI000190E95D Length = 281 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 101/260 (38%), Positives = 133/260 (51%), Gaps = 28/260 (10%) Query: 453 EVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVE------ 506 EVHAYD YM LLE +L+ A GGS I+LSATLP ++KLL+ + +D E Sbjct: 1 EVHAYDGYMVKLLEGLLRFHAAQGGSAIILSATLPAALREKLLNAF---SDGAEFMSAGG 57 Query: 507 -NNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAAN 565 +N+ YP ++ +G LL P P + L ++ R++A Sbjct: 58 SDNAGYPWLSHLTSSG-----LLEQPLATRPEVQRTVAVNWIQQRQEALDIIYRVVAT-- 110 Query: 566 AGAQVCLICNLVDVAQVCYQRL-KELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNG 624 G +C I N VD A YQ+L E + D+ LFH+RF DR EN+ ++ FG N Sbjct: 111 -GQCICWIRNTVDDALDTYQQLLHEGIVPEQDLLLFHSRFAFIDRIAIENKTLNWFGNNA 169 Query: 625 --KRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYR-------P 675 G++L+ATQVVEQSLD+DFDW+IT P DLL QR GRL RH R P Sbjct: 170 PVSERRGKVLIATQVVEQSLDLDFDWMITDLAPIDLLIQRAGRLQRHIRDAHGQRKSTLP 229 Query: 676 AGFEIPVATILLPDGEGYGR 695 + PV I P G GR Sbjct: 230 DERQPPVLHISGPSLAGAGR 249 >UniRef50_B1I5P0 Metal dependent phosphohydrolase n=2 Tax=Clostridia RepID=B1I5P0_DESAP Length = 729 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 124/372 (33%), Positives = 176/372 (47%), Gaps = 71/372 (19%) Query: 312 IEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLI 371 + APTG+GKTE L +A + +++ LPTQATANAM R++ ++ N+ Sbjct: 251 LRAPTGTGKTEALLLWAGD------TERLLYLLPTQATANAMWKRLK----KIYGEENVG 300 Query: 372 LAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISV 431 LAHG + + I + EE + W S VF + V T+DQ L++ Sbjct: 301 LAHGRAGY-----------ILRKELEEDPLDVRLWAS-----VFARPVVVGTLDQYLMAH 344 Query: 432 LPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQK 491 L +H IR R+ +++DE+H+YD Y GLL+ L + + L SATLP Sbjct: 345 LQGRHWEIRRSLARRATVVLDEIHSYDPYTLGLLQEALAQEPP--ARLALASATLPEFLP 402 Query: 492 QKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADML 551 + L L + PL W+ +R +L R + EP+ A Sbjct: 403 ELLGQGPLLEAE-------EPL--WQ----RKRHEL---------RLFV--EPVASA--- 435 Query: 552 PDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRRE 611 LE ++ G V +I N V AQ YQ L+E + QV L H+RF DR + Sbjct: 436 -----LEEALSFVRQGKTVLVIANTVKQAQEIYQALQEDGDYQVH--LLHSRFAFRDRWK 488 Query: 612 KENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHR 671 KE ++ GK G ILVATQ+VE SLD+ +D L T+ P D L QRLGR++R R Sbjct: 489 KEEQL-------GKTIPGTILVATQIVEVSLDISYDVLFTEVAPIDALVQRLGRVNR--R 539 Query: 672 KYRPAGFEIPVA 683 P G P A Sbjct: 540 GITPEGTTAPPA 551 >UniRef50_O57915 Putative uncharacterized protein PH0176 n=1 Tax=Pyrococcus horikoshii RepID=O57915_PYRHO Length = 690 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 166/585 (28%), Positives = 249/585 (42%), Gaps = 142/585 (24%) Query: 219 SLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKR 278 SL G L+DWL E A D+ +Y+ RV+ G +S+K Sbjct: 165 SLFNGVLRLSDWL------------ESASLDVG---SYYTSGSFVRDRVI---GYLSSK- 205 Query: 279 CYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIAD 338 G++PR Q + + G PTG GKTET+L IAD Sbjct: 206 -----------GWKPRDYQGFI----MGKGSGYFLLPTGDGKTETSLL--------AIAD 242 Query: 339 S--VIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSI-KSRAITEQG 395 S VI+ LPT T AM R E +F N+ HG LF S+ K ++E+ Sbjct: 243 SPKVIYTLPTITTVEAMRKRFE----EMFGKDNVSFGHG-----MLFYSLYKEGKLSER- 292 Query: 396 QEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVH 455 N+ G I V TIDQVL++ + +R L + S LIVDE+H Sbjct: 293 -------------LINRYAMKG-IHVSTIDQVLLAFINYFKFPLRELSLRGSHLIVDEIH 338 Query: 456 AYDTY-MNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLI 514 +Y Y ++ +LE + A +G V++ SAT+P ++KL + Sbjct: 339 SYTPYTLSLILEGLRYAVNYLGSKVVVTSATMPSLLREKLEEV----------------- 381 Query: 515 NWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLIC 574 G+ F+ + + R + DL M E + + +V +I Sbjct: 382 ---GLKELIPFEKVKRRYESKRRVRV---------WFRDLPMFEDIDSIIREKGKVLVIT 429 Query: 575 NLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVA 634 N V A+ Y+ LK+ + D+ LFH+RFT+ D+ EK R+++ ILVA Sbjct: 430 NTVTRAREIYEELKKRRD---DVYLFHSRFTVRDKEEK-MRLVNEISSG-------ILVA 478 Query: 635 TQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKY-RPAGFEIPVATILLPDGEGY 693 TQVVE SLD+D+D L T+ P D L QR GR++R K R + + LP Sbjct: 479 TQVVEVSLDIDYDTLYTEVAPIDSLIQRFGRVNRRGMKEGRAYVYAVEGKRFYLP----- 533 Query: 694 GRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKF 753 YS R + + ++EL A + LD + + E W D++ Sbjct: 534 ------YSK-RSVEASLSMVKELEEA--------KNELDFLRLNDSFYEEIW-----DEY 573 Query: 754 ESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLP 798 ES E +K++ R+ L+ + E+ L+ TRD MSLP +P Sbjct: 574 ES-ELKKKYLERQALRTIHRF----RKESWLS-TRDTFMSLPAIP 612 >UniRef50_A3DHS2 CRISPR-associated helicase Cas3 n=3 Tax=Clostridium thermocellum RepID=A3DHS2_CLOTH Length = 750 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 113/365 (30%), Positives = 175/365 (47%), Gaps = 56/365 (15%) Query: 306 APGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLF 365 A G V APTGSGKTE AL W L + +IF +PT T+N++ R+ ++H F Sbjct: 260 AVGDVVAIAPTGSGKTEAALM--WALNSE--TTKIIFLMPTMVTSNSLYERL---STHYF 312 Query: 366 SSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTID 425 + L+H + + ++ K E E + W ++K F+ + V T+D Sbjct: 313 PKESCGLSHSGAE-TYFYKKSK-----EDDTENDY----DWSQILHQKAFIPAVMVSTVD 362 Query: 426 QVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSAT 485 QVL + + + S +I DE+HAYD Y GL+ V+K GG V+L+SAT Sbjct: 363 QVLSTEFHTGLWNQKEYALVGSSVIFDEIHAYDGYTIGLITGVIKKIKKYGGRVMLMSAT 422 Query: 486 LPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPI 545 +P + LD L++ + L E+L R S + Sbjct: 423 MPKFLRNHFLD----------------LLDSK---------CLVVAEELMERASNE---- 453 Query: 546 CLADMLPDLT-MLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARF 604 A + DL + E+++ + G +V LI N V+ A+ + K + D+ H+ F Sbjct: 454 -WAYLDTDLEGIREKVLKEVSEGKKVALIVNDVETAK---KEYKYYSKKGFDVLCLHSEF 509 Query: 605 TLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLG 664 T+ DR+EKE R+ S G N R++++TQV+E SLDV FD + ++ P D L QR G Sbjct: 510 TMKDRQEKEGRLTSKEG-----NPYRLVISTQVIEVSLDVSFDVMFSECAPIDSLVQRAG 564 Query: 665 RLHRH 669 R +RH Sbjct: 565 RCNRH 569 >UniRef50_C2GEZ0 Helicase n=1 Tax=Corynebacterium glucuronolyticum ATCC 51866 RepID=C2GEZ0_9CORY Length = 894 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 191/750 (25%), Positives = 299/750 (39%), Gaps = 63/750 (8%) Query: 11 WGKS-SKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLF 69 W K+ +K+ G ++ L+ H LD AAVA + + E L + V + + Sbjct: 12 WAKTINKTGNNGASLYPLLPHLLDTAAVARALYTHWLRPGLQDLVQEQLGPRAVDV-VSW 70 Query: 70 FIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSE 129 +HD GK + FQ + A L Q RK + L F +D S Sbjct: 71 ICGIHDCGKANPIFQGQLANK----KAEEADLWADVRQNIRKSGRCSFDLSDFVRDQCSR 126 Query: 130 QSLG---DFFSFFDAAPHPYESWF--PWVE-AVTGHHG-----FILHSQDQDKSRWEMPA 178 ++L + F + + ++ W E GHHG F ++D+D + Sbjct: 127 RALRRHEQVSALFLSGWETFNTFGEEKWAEIPALGHHGYFDLPFAAPNRDEDHLKHAFRE 186 Query: 179 SLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGS---WT 235 L D Q W + AL L+ L I + P S LL+G LAD + S W Sbjct: 187 DLDRLGWTDAQCSLNW-HLQRALHLSADDLDI-ECSPTVSVLLSGLTVLADRIASQDSWI 244 Query: 236 TTNTFLFNEDAPSDINALRTYFQ---DRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQ 292 L + L + DR DA V E G+ + E A + + Sbjct: 245 AETKRLEETGQLTFTEPLDRWVDTQADRAVDA--VDETIGIYRGWKSEEDARADILGSFT 302 Query: 293 PRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANA 352 PR Q + AL GL I APTGSGKTE A L + ++F LPT AT NA Sbjct: 303 PRDAQAV--ALTCGEGLVTIMAPTGSGKTEAAF-----LRHSTRDERLVFLLPTMATTNA 355 Query: 353 MLTRMEASASHLFSSPNLI--LAHGNSRFNHLFQSIKSRAITE-QGQEEAWVQCCQWLSQ 409 ++ R + +F + LAH ++ + + S E G E + ++ + Sbjct: 356 LMKRTQ----KVFRRQRNVASLAHSSATLEDFYTNSVSVFDDECSGSETGGLFPTSFVRK 411 Query: 410 SNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVL 469 +++ L + V T+DQ L + LP+K + L + + ++VDEVH D Y L+ VL Sbjct: 412 GLERL-LASVTVATVDQALKASLPIKWVHLLLLALANAHVVVDEVHTMDPYQGEFLKNVL 470 Query: 470 KAQADVGGSVILLSATLP---MKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFD 526 V L+AT P M K D P + S LI+ G AQ Sbjct: 471 YWLGKTRARVTFLTATFPATMMNDFTKAYDAGAGREVPPTDVSFPSLID--GSGAAQELS 528 Query: 527 LLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQR 586 ++ Q E ++ R A++ +ICN V C + Sbjct: 529 CGSY------NVGFQLEHADKQRIVDKHVEWARNQRNLYPDARIGIICNQV---ARCQEI 579 Query: 587 LKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDF 646 L ++ + H+ T R + N++ G +G G +V TQ +E SLD+D Sbjct: 580 ASMLRGEGHEVIVLHSSLTALHRSQVSNQLEKLLGPDGT-GWGITVVGTQAIEASLDIDL 638 Query: 647 DWLITQHCPADLLFQRLGRLHRH---HRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNV 703 D + CP+ + QR GRL R R R G + IL+P Y +H Sbjct: 639 DLMSIDLCPSTSILQRAGRLWRRDDPERVNRVPGASLKTIHILVP--HDYASGDHYPYQP 696 Query: 704 RVMWRTQQHIEELNGASLFFPDAYRQWLDS 733 ++ RT+Q +E + + + PD ++++D+ Sbjct: 697 ALLTRTRQWLEN-HPSPIAVPDDCQEFVDA 725 >UniRef50_B1I4M4 CRISPR-associated helicase Cas3 n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I4M4_DESAP Length = 795 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 117/382 (30%), Positives = 186/382 (48%), Gaps = 60/382 (15%) Query: 307 PGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIF-ALPTQATANAMLTRMEASASHLF 365 PG V+ APTGSGKTE AL +A Q + + +F LP QA+ NAM +R+ F Sbjct: 289 PGCAVLVAPTGSGKTEAALLWAAANGRQTVGNPPLFYVLPYQASLNAMRSRL----GERF 344 Query: 366 SSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTID 425 ++L H + L++ + R T G+ + +Q+ +++ LG++ V + Sbjct: 345 GDDRVVLQHSRA-LQALYRQLLDRGYTP-GEAK---------NQAEREINLGRLHVAPV- 392 Query: 426 QVLISVLPVKHRF-IRG-------LGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQA-DVG 476 ++L ++ F +RG GR ++ DE+HAYD G++ A+L+ D+ Sbjct: 393 RILTPYQLLRGAFQLRGHEAIWTDCAGGR--IVFDEIHAYDPSRLGMILALLEHMVRDLT 450 Query: 477 GSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPP 536 +V+++SATLP K+ L + T + AY Sbjct: 451 VNVLVMSATLPSILKEILNEKLNRPTPIIATTKAYE------------------------ 486 Query: 537 RFSIQPEPICL--ADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQ 594 + + +CL AD+L + T+LE + A G V ++ V AQ ++ L ++N + Sbjct: 487 --AFRRHRLCLKAADLLDEETILE-IHQKARRGLAVMVVATTVQRAQQMWETLNAVSNGE 543 Query: 595 VDIDLFHARFTLNDRREKENRVISNFGKN--GKRNVGRILVATQVVEQSLDVDFDWLITQ 652 + ++L H +F DR +KE ++ GKR ILVATQVVE SLDVDFD L T Sbjct: 544 IPVELLHGKFCSRDRFKKEQWLLQQVSTRNAGKRKNPLILVATQVVEVSLDVDFDVLFTD 603 Query: 653 HCPADLLFQRLGRLHRHHRKYR 674 P + L QR GR++R R+YR Sbjct: 604 PAPLEALLQRFGRVNR-GRRYR 624 >UniRef50_B5IGN2 CRISPR-associated helicase Cas3 domain protein n=1 Tax=Aciduliprofundum boonei T469 RepID=B5IGN2_9EURY Length = 728 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 119/389 (30%), Positives = 180/389 (46%), Gaps = 65/389 (16%) Query: 311 VIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNL 370 +++APTG+GKTE L ++ + VI+ LPTQAT+NAM R+ +F + Sbjct: 245 LLKAPTGTGKTEALLLWSKN-------NRVIYLLPTQATSNAMWNRLR----RMFGDYAV 293 Query: 371 ILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLIS 430 + HG ++ + + +S + + ++W + S VF+ I V T+DQ L++ Sbjct: 294 GITHGRAQL--IIRREESLKDNAESENQSWHSKVLFSS-----VFMRPITVATLDQYLLA 346 Query: 431 VLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQ 490 L +H + S +I+DEVHAYD Y GLL + +K + L SAT P Sbjct: 347 ALHGRHWENKIFYTSNSDMIIDEVHAYDPYALGLLISTVKLFP--PKRLALASATFPKPL 404 Query: 491 KQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADM 550 L G RF + ++L R ++ + L D Sbjct: 405 VSLFLQELG------------------------RFAEVNAEKELWERRRLK---VRLEDQ 437 Query: 551 LPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRR 610 + ++ ++ A +G + +I N V AQ Y+ ++ L H+RF DR Sbjct: 438 -NIFSAIDDIVKEAKSGKNILVILNTVANAQKFYREIEYPKKM-----LLHSRFVFRDRE 491 Query: 611 EKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHH 670 +KE +++ NFG GK G ILVATQVVE SLD+ FD L T+ P D L QR GR++R Sbjct: 492 KKE-KMLENFGY-GKHEKGLILVATQVVEVSLDISFDTLYTEIAPVDALVQRFGRVNRTG 549 Query: 671 RKYRPAGFEIPVATILLPDGEG----YGR 695 K EI I L G+ YGR Sbjct: 550 EK------EIASVRIFLKYGDKSALVYGR 572 >UniRef50_D1B1G2 CRISPR-associated helicase Cas3 n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B1G2_SULD5 Length = 737 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 136/474 (28%), Positives = 208/474 (43%), Gaps = 71/474 (14%) Query: 310 TVIEAPTGSGKTETALAYA-WKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSP 368 ++E PTG GKTE +L +A + L +Q +I+ LPTQ T+N + R++ + F Sbjct: 250 VLVEIPTGEGKTEGSLLWAIYNLYNQNT--KIIYTLPTQTTSNKLYDRIQ----NFFDKE 303 Query: 369 NLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVL 428 L H ++ ++ E G + Q +S+S F I V TID +L Sbjct: 304 ECGLIHSTAKI-----FLEKAYEKENGIVDDVFQSDFLISKS----FNKPITVSTIDSLL 354 Query: 429 ISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPM 488 + + I SV+I+DEVHAYD + G L+ L+ + V L+SA++P Sbjct: 355 KYFINIGRFNIATKNFLNSVIIIDEVHAYDFKLMGFLKRFLELCQEYDVRVCLMSASIP- 413 Query: 489 KQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLA 548 Q +KLL G+ T YPL+ + + F+ + I Sbjct: 414 NQLKKLL---GIDT--------YPLVTQKDL------------------FAKKANEIIKK 444 Query: 549 DMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLND 608 +M D LE M+ + V +I N V A Y L+ L D+ L+H+ F D Sbjct: 445 EMFLD-DDLESMMQKFHEKKNVLIIRNTVKSAFQIYNELQTLGIKSDDMILYHSTFKKRD 503 Query: 609 RREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHR 668 R KE+ + N K+ IL+ATQ+VE SLD+DFD + T + P D L QR GR++R Sbjct: 504 RATKEDLIFEKL--NSKKPF--ILIATQIVEISLDIDFDVMFTDNAPIDALIQRFGRVNR 559 Query: 669 HHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYR 728 R I + P Y+N ++ T Q I+ NG + Y Sbjct: 560 KKSIERKGEIFIYQNKNIRP-----------YTNESLLDLTFQTIQ--NG--YYELGQYV 604 Query: 729 QWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEE----YSLQD 778 +WL+ +YD D+ + + F+ A C K K L E+ Y L+D Sbjct: 605 EWLNIVYDKLFEDDTQLKNVKIRLFDPA-CLKYDATIKQLHGIEKSSDNYDLRD 657 >UniRef50_UPI0001B51C30 hypothetical protein SvirD4_12620 n=1 Tax=Streptomyces viridochromogenes DSM 40736 RepID=UPI0001B51C30 Length = 913 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 121/423 (28%), Positives = 179/423 (42%), Gaps = 48/423 (11%) Query: 311 VIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLF---SS 367 ++E+ TGSGKT AL A L + A+PT+A AN + A ++ Sbjct: 246 IVESDTGSGKTHLALWCAHHLAVTCGYQGLYMAMPTRAAANQTAREIAAFMDRALGEQNT 305 Query: 368 PNLILAHGNSR---FNH-LFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFL------- 416 NL + H + F H L + ++RA E ++ ++ L Sbjct: 306 ANLAVVHATAEATDFVHQLLDAGRTRAQAALDGLEDFISTPSPDDPLQRRAVLSPWYLRR 365 Query: 417 -----GQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKA 471 V T+DQV ++ P H +R G+ LI+DE HAY+ + GLLEA + Sbjct: 366 CLGLIAPFAVGTVDQVALAAQPSHHWMLRMFGLAAKTLIIDEAHAYELFQQGLLEAAIAW 425 Query: 472 QADVGGSVILLSATLPMKQKQKLLDTY--GLHTDPVENNSAYPL--INWRGV----NGAQ 523 AD G SV++LSATLP + L + G E P+ ++ G+ Sbjct: 426 LADAGASVVILSATLPTATQTALTRAWCEGHRVPVTERGQTGPITVVDHHGIITRTGRTD 485 Query: 524 RFDLLAHPEQLPPRFSIQPEPICLADMLPD---LTMLERMIAAANAGAQVCLICNLVDVA 580 D +H E+ P E D LPD + R+ A G ++ N V A Sbjct: 486 DTDRSSHGERTAPA-----ELHTFIDFLPDPGTAALAARLFDEAGKGGITVVMRNRVATA 540 Query: 581 QVCYQRLKELNNTQ----VDIDLFHARFTLNDRREKENRVISNFG-------KNGKRNVG 629 Y+ T +I L H + R E+ + + G +N +R Sbjct: 541 VDLYRSAAHCAQTHGWSPSEIVLLHGQNLPRYRLPGEDLLTRHLGPGKDRTRRNPERPDR 600 Query: 630 RILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRH--HRKYRPAGFEIPVATILL 687 +++ATQV EQSLD+DFD + T P D+L QR GR+HRH + RP F P TIL+ Sbjct: 601 LLVIATQVAEQSLDIDFDRIYTDLAPIDVLIQRRGRVHRHQVNDSSRPEAFRRPRMTILI 660 Query: 688 PDG 690 G Sbjct: 661 QPG 663 >UniRef50_B3EG04 CRISPR-associated helicase Cas3 n=3 Tax=cellular organisms RepID=B3EG04_CHLL2 Length = 750 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 124/456 (27%), Positives = 204/456 (44%), Gaps = 63/456 (13%) Query: 301 DALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEAS 360 +A V G T + APTGSGKTE AL +A ++++ V + LP A+ NAM R+ Sbjct: 248 EAAAVTKGSTFLTAPTGSGKTEAALLWASSNQNERLGKRVFYVLPYTASINAMYKRLAGL 307 Query: 361 ASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIG 420 F + + HG + + L++ R + + + +A+ + LS+ K + Sbjct: 308 KG--FGDEKVGIRHGKASY-FLYKYFSEREYSPE-EAKAFAKDAGNLSKKIYKPY----K 359 Query: 421 VCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKA-QADVGGSV 479 + T Q++ +K R + + I+DE+HAYD + L+ + K + + Sbjct: 360 IITPFQIIKEFFGLKGFEQRIAEMTGGLFILDEIHAYDVHNTALILEICKILKKEFCAKF 419 Query: 480 ILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFS 539 ++SATLP K L Y +EN P PE+L F+ Sbjct: 420 FIMSATLP-----KFLKMYFQDVLEIENEITLP------------------PEELHS-FT 455 Query: 540 IQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDL 599 + ++ L + I G +V ++CN V AQ ++ LK+ + L Sbjct: 456 RHKLLLLEGNIRDGLAQIRSEI---KTGKKVLVVCNQVKTAQEIFRGLKDCSENSA---L 509 Query: 600 FHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLL 659 H+RF + DR+E E V N K + +LVATQ+VE SLD+D+D L ++ P D L Sbjct: 510 LHSRFIVRDRQEIEKYV------NDKYD---LLVATQIVEVSLDIDYDILFSEPAPIDAL 560 Query: 660 FQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGA 719 QR GR++R RP EI + E IY RV +T +++++G Sbjct: 561 IQRFGRVNRK----RPPINEIKAVCVFQSPSEN---DFWIYKPERV-EKTLSILQKVHGE 612 Query: 720 SLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFES 755 +L +Q +D +Y D + G +++FES Sbjct: 613 NL-SESIVQQLVDEVYADG------YKGKDLEEFES 641 >UniRef50_A9B8P3 CRISPR-associated helicase Cas3 n=6 Tax=Chloroflexi (class) RepID=A9B8P3_HERA2 Length = 804 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 125/460 (27%), Positives = 198/460 (43%), Gaps = 58/460 (12%) Query: 314 APTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILA 373 APTGSGKTE AL +A +Q + + +ALP QA+ NAM R+ A F + L Sbjct: 289 APTGSGKTEAALYWALGEGEQPVP-RIFYALPFQASMNAMFDRLRQPAKG-FGEQAVGLQ 346 Query: 374 HGNSR---FNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLIS 430 HG + + L +S + E W + L KVF + Q+L + Sbjct: 347 HGRALQVLYLRLLESENGLDSRTAAEGERWERNINSLHARPLKVF-------SPYQMLKA 399 Query: 431 VLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQAD-VGGSVILLSATLPMK 489 + +K ++ I DE+HAY+ L+ ++ ++ + ++SAT P Sbjct: 400 LFQIKGFEAILSDYAQARFIFDEIHAYEPQRLALIICLINYLSEHFAATFFVMSATFPTI 459 Query: 490 QKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLAD 549 ++ L + G H + S + Q R +Q L Sbjct: 460 IREHLANALGRHQVIHASASLF---------------------QAFARHQLQ----LLDG 494 Query: 550 MLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDR 609 L + +E ++ AG QV + N V +Q L++ + D+ L H+RFT+ DR Sbjct: 495 ELISASSIEHIVNDFKAGKQVLVCANTVRRSQTILALLRDAGVAESDLLLIHSRFTMKDR 554 Query: 610 REKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRH 669 E RV+ + IL+ TQV+E SL++D D L + P + L QR GR++R Sbjct: 555 SALEQRVVQRCQLGLDQPEPFILITTQVIEVSLNIDLDTLYSDPAPLEALLQRFGRVNRS 614 Query: 670 HRKYRPAGFEIPVATILLP-DGEG-YGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAY 727 +K G +PV P DG+G YGR + R++ T +E+ NG + Sbjct: 615 RKK----GI-VPVHVFREPRDGQGVYGRSKDPKQQGRIVQVTLSELEKHNG-EIIDESMI 668 Query: 728 RQWLDSIYDDAEM------------DEPEWVGNGMDKFES 755 QWLD+IY DA + D +W+ + + FES Sbjct: 669 DQWLDTIYADAILAKQWQDEYQKIYDNAQWIAHNLRPFES 708 >UniRef50_B9L1B9 CRISPR-associated helicase Cas3 domain protein n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L1B9_THERP Length = 773 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 139/467 (29%), Positives = 214/467 (45%), Gaps = 61/467 (13%) Query: 295 QLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAML 354 QL+ AL G ++ APTG+GKT+ A+ W ++ + + + LP QA+ AM Sbjct: 256 QLRAFQRALGEYEGSALLIAPTGAGKTDAAIR--WIARNRIGGERIFYILPYQASIEAMG 313 Query: 355 TRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKV 414 +E LF + H + FQ R + EEA+ Q + ++ N+ V Sbjct: 314 QTLE----RLFGRETVGTLHART-LEVAFQ----RYFSGDDYEEAY-QAARQDAELNRLV 363 Query: 415 FLGQIGVCTIDQVLISVLPVKHRFIRGLG--IGRSVLIVDEVHAYDTYMNGLLEAVLKAQ 472 I V T Q LI L RF GL +G +++I DE+HAYD ++ L+ +++ Sbjct: 364 H-KPIKVTTPFQ-LIKWLFGLPRFEVGLAEMVG-ALVIFDEIHAYDAHVTALILELVRVL 420 Query: 473 ADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPE 532 ++G + +SAT P +Q + D Y A PL +R ++ D A Sbjct: 421 RELGARCLFMSATFPDFLRQYIEDAY-----------AQPLRLFR-LDQPPAHDTWAERF 468 Query: 533 QLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNN 592 R ++ AD L +L L ++ AA G +V ++ N V AQ YQRL E Sbjct: 469 LAQARHRVE----WTADPLEELVDL--VVEAAQNGERVLVVANRVQQAQALYQRLVECVP 522 Query: 593 TQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQ 652 + L HAR DR +E R+++ V R+LVATQVVE SLD+ FD L+T+ Sbjct: 523 D--GLQLLHARLMRRDRVAREQRILAALRGESPEPV-RVLVATQVVEVSLDISFDRLVTE 579 Query: 653 HCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRH-EHIYSNVRVMWRTQQ 711 P D L QR GR++R++ P I YG ++Y R+ ++ Sbjct: 580 VAPVDDLLQRFGRVNRYYEHNSPRPIVI---------SRTYGDALYYVYDRERL----ER 626 Query: 712 HIEEL--NGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESA 756 +EE +G +L DA QW++ +Y + W N +FE A Sbjct: 627 TLEEAPPHGHALDAFDA-EQWVERVYREG------WTTNEGRRFEQA 666 >UniRef50_Q74N41 NEQ022 n=1 Tax=Nanoarchaeum equitans RepID=Q74N41_NANEQ Length = 755 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 104/368 (28%), Positives = 162/368 (44%), Gaps = 70/368 (19%) Query: 312 IEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRME-----ASASHLFS 366 + APTG GKT TAL +A + + + LPT +++ A F Sbjct: 233 LRAPTGWGKTTTALLFAL----NKDYNKIFITLPTITAIEDFRQKLKNAGFKAEEYFYFY 288 Query: 367 SPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQ 426 IL + R N L+ +VQ I + TIDQ Sbjct: 289 DARAILDEEDERLNSLY----------------FVQNL-----------YSPINITTIDQ 321 Query: 427 VLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGG-SVILLSAT 485 +L+S L F++ L + +S+LI+DE+H M LL+ +L+ + ++L+SAT Sbjct: 322 ILLSFLQAGKYFMKRLNLRKSILIIDEIHLLTPQMLFLLKKLLEHLVPLYKIRLLLMSAT 381 Query: 486 LPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPI 545 LP +I++ N +F+ + E L P++ E + Sbjct: 382 LPK-----------------------GIIDYLSENINIKFEFVDIYE-LEPKYR-NRERV 416 Query: 546 CLADMLPDLTM-LERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARF 604 + + D++ +ER++ G V +I N V+ A Y+RLKE N +I L H RF Sbjct: 417 EIELIKKDISENIERIVEENKKGKSVLVIANTVEKAVCIYKRLKEEYNIN-NISLLHGRF 475 Query: 605 TLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLG 664 R+E+E + G ILV+TQV E SLDVDFD L T+ P + QRLG Sbjct: 476 MFKHRKEREREIRDLLENKG------ILVSTQVTEVSLDVDFDVLFTEAAPISAIVQRLG 529 Query: 665 RLHRHHRK 672 R++R+ +K Sbjct: 530 RVNRYGKK 537 >UniRef50_B5GY58 Crispr-associated helicase cas3 n=1 Tax=Streptomyces clavuligerus ATCC 27064 RepID=B5GY58_STRCL Length = 1004 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 205/830 (24%), Positives = 304/830 (36%), Gaps = 164/830 (19%) Query: 11 WGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSV--VLQNTFCRNEMLSKQRVKAWLL 68 W KS G ++LL+ H LD AAVA WD+ + V+ R + L+ Sbjct: 5 WAKSPDR--AGGTMNLLLSHLLDTAAVAGVMWDRFLPRVVHEELDRVAGGPGRGRGL-LM 61 Query: 69 FFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLS 128 + +HD GK ATPS ++ + AAGL W ++ + Sbjct: 62 WLCGIHDFGK------------------ATPSHQRQRPELAAELP--AAGLGW--EEEIG 99 Query: 129 EQ------SLGDFF--SFFDAAPHPYESWFPWV-EAVTGHHGFI------------LHSQ 167 E+ G F A P E WV V GHHGF L Sbjct: 100 ERYRWEHAPAGAFLLRPLLTGAGWPQEH-IRWVWPLVAGHHGFFPVESALGSPPAALRRV 158 Query: 168 DQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLL--AGFC 225 D D S WE D+ + + L AL PA PP + L +G Sbjct: 159 DGD-SAWEAVRQKLMCVILDELGFGDGLDGLAAL--CPA------RPPSRALQLQISGLV 209 Query: 226 SLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQ-------QDASRVLELSGLVSNKR 278 +ADW+ S D D++ + Q R L G + +R Sbjct: 210 VMADWIASGPEN---FPGVDVLEDVSYAGARRRAEAAWAAIGLQGGFRYLAEPGPGTFRR 266 Query: 279 CYEGVHALLDNGYQPRQLQVLVDALPV---APGLTVIEAPTGSGKTETALAYAWKLIDQQ 335 + G+ PR +Q L PGL ++EAP G GKT L A L + Sbjct: 267 RF---------GHDPRPVQELAARAARELDGPGLLIVEAPPGEGKTWAGLIAAETLAART 317 Query: 336 IADSVIFALPTQATANAMLTRMEASASHLFSS--PNLILAHGNSRFNHLFQSIKSR-AIT 392 A V +P +T + M R+ + + P + L HG + + + + A+ Sbjct: 318 GAGGVFVGMPVHSTCDPMFRRVREWVRGIDEALAPAVALLHGRRTLDRSWNVLLPQDAVG 377 Query: 393 EQGQEEAW----------VQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGL 442 G+E A + QW + + + V +DQ+L + K +R Sbjct: 378 HCGEEPAAAVHGTAGDPRLVPAQWFFDYARGLLCPFV-VAPLDQLLYATTRTKFVMLRMA 436 Query: 443 GIGRSVLIVDEVHAYDTYMNGLLEAVLK--AQADVGGSVILLSATLPMKQKQKLLDTYGL 500 G+ V+++DE+HA D + L+ L+ QA V V+LLSATL Q++ L+D Y Sbjct: 437 GLPGKVVVLDEIHAVDVHAQQYLQEGLRWLGQARV--PVVLLSATLTAGQRRSLVDAYLA 494 Query: 501 HT--------DPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQP------EPIC 546 D + YP + A R+D + PR ++ E Sbjct: 495 GAAGEEEYTYDGLPQPDGYPSVT------AVRYDHGG--DGAAPRCVVRRCASALRERDV 546 Query: 547 LADMLPD---------------LTMLERMIAAANA-GAQVCLICNLVDVAQVCYQRLKEL 590 + ++LP+ + ++ A A G + ++ N AQ + L+ Sbjct: 547 IVEILPEGPEGAEDTAVDRAVADRAVAALLGEALADGGRALVVRNTAHRAQTLWTGLRTR 606 Query: 591 NNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGR-ILVATQVVEQSLDVDFDWL 649 +V L H +FT R E + + R I+VA Q EQ+ DVD D L Sbjct: 607 FGDEVL--LLHRQFTAERRAEIADDCLRQLAPGSPERPRRLIVVADQTAEQAFDVDVDLL 664 Query: 650 ITQHCPADLLFQRLGRLHRHHRKYRPAGFEIP---VATILLPDGEG------------YG 694 +T P DLL QR GRLHR RP P V G G YG Sbjct: 665 VTDLAPIDLLLQRAGRLHRDTTVVRPVRLAAPRLVVTGTTAVSGTGGPPRFPARSTALYG 724 Query: 695 RHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPE 744 RH + + V H GA L P A + + Y D + D P+ Sbjct: 725 RHPLLRAAHLV------HRAARTGARL--PGAVPRLVGEGYADGDTDLPD 766 >UniRef50_C1QDM1 CRISPR-associated helicase Cas3/CRISPR-associated HD domain protein n=1 Tax=Brachyspira murdochii DSM 12563 RepID=C1QDM1_9SPIR Length = 764 Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 119/439 (27%), Positives = 196/439 (44%), Gaps = 65/439 (14%) Query: 311 VIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNL 370 ++ A TG GKTE AL +A K + LP + + NA+ R++ ++ + + Sbjct: 253 IVIASTGIGKTEGALLWAKK-------SKTFYTLPLKVSINAIYERIK---NNYYDKEKI 302 Query: 371 ILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLIS 430 H +S + L + + ++ ++S K F VCTIDQ+ Sbjct: 303 TFLHSDSINDMLDNDLSIDDVIDK------------YNKSKKLSF--PFTVCTIDQLFYF 348 Query: 431 VLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQ 490 V I + S LI+DE+ +Y + + LK D+GG +++AT P Sbjct: 349 VFKSLGTEIFPAALKYSKLIIDEIQSYTPEITAFIIYGLKVINDIGGKFCIITATFPPIV 408 Query: 491 KQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADM 550 K KL++ ENN IN+ + A L + SI+ I D Sbjct: 409 K-KLME---------ENN-----INFEMPSKA----FLKKDKNNE---SIKRHFIKFID- 445 Query: 551 LPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRR 610 D+ + +I +A +V +ICN V +Q Y LKE N +I+L H+RF + DR+ Sbjct: 446 -EDIFNYDNIIKSA-ENKKVLVICNTVKHSQEVYNILKEYNIK--NINLLHSRFLMKDRK 501 Query: 611 EKENRVISNFGKNG---KRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLH 667 +KE+ I NF N + I ++TQ+VE SLD+DFD L T AD L QR+GR++ Sbjct: 502 KKEDD-IKNFAPNDISKREETYGIWISTQIVEASLDIDFDELHTDMSSADSLLQRMGRVY 560 Query: 668 RHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAY 727 R R Y I + DG G + IY N ++ + + +F + Sbjct: 561 R-DRAYNKNEPNIFIYNT--KDGYGSVYDKEIYDNSKMFLKYYDN-------KIFTEEDK 610 Query: 728 RQWLDSIYDDAEMDEPEWV 746 + +++ +YD+ + E ++ Sbjct: 611 QDFINKVYDEEILKESNYL 629 >UniRef50_C0E033 Putative uncharacterized protein n=1 Tax=Corynebacterium matruchotii ATCC 33806 RepID=C0E033_9CORY Length = 552 Score = 119 bits (297), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 85/269 (31%), Positives = 125/269 (46%), Gaps = 24/269 (8%) Query: 409 QSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAV 468 +S L + V TIDQ ++ LP K +R L + + +++DEVH D Y + LLE + Sbjct: 56 KSGASRLLAPVCVGTIDQAILGSLPTKFNHLRLLALANAHVVIDEVHTLDAYQSELLEDL 115 Query: 469 LKAQADVGGSVILLSATLPMKQKQKLLDTYGLH-TDPVENNSAYPLINWRGVNGAQRFDL 527 L A + L+AT+P Q++K Y H +DP S W +G + L Sbjct: 116 LHWWAATHTPITFLTATMPAWQQEKFKQAYSKHDSDPAHFPS---FTTWLPRSGDE---L 169 Query: 528 LAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAA----------ANAGAQVCLICNLV 577 + P P I EP + D+ D ++++ + A A++ +ICN V Sbjct: 170 DSAPATDAPPVVIPTEPYTI-DLTVDPVPYDQLVDSHIRWIQDQRQAYPQARIGIICNTV 228 Query: 578 DVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQV 637 D AQ Q N L H+R T RR + + GKNG ++V TQ Sbjct: 229 DRAQAIVQAFNHENPV-----LLHSRMTAEHRRRNAEELEQSIGKNGAATT-VLVVGTQA 282 Query: 638 VEQSLDVDFDWLITQHCPADLLFQRLGRL 666 +E SLD+D D L T+ CPA+ L QR GRL Sbjct: 283 IEASLDIDLDVLRTELCPAESLIQRAGRL 311 >UniRef50_A4XGC8 CRISPR-associated helicase Cas3 n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XGC8_CALS8 Length = 908 Score = 118 bits (296), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 108/366 (29%), Positives = 165/366 (45%), Gaps = 44/366 (12%) Query: 310 TVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPN 369 T++ APTG GKTE A+ W + + + LP +A+ N R A + F Sbjct: 275 TILIAPTGYGKTE--FAFLW-----SSGEKLFYTLPLRASVNNTFER----AKNAFGCNK 323 Query: 370 LILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLI 429 L H ++ L +S E ++ C+ Q + V V T DQ Sbjct: 324 TGLLHSDADVYLLDKS---------SDETGSIKLCELAKQLSYPVI-----VSTGDQFFP 369 Query: 430 SVL--PVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLP 487 L P R L R + +DE+ AY ++ L+ +GG +L++AT+P Sbjct: 370 YALRPPGFERIFVSLSYSR--IAIDEIQAYSPKACAIIVKFLEWVYKMGGKFLLMTATMP 427 Query: 488 MKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICL 547 K + Y P +N+ + ++ D + + R ++ Sbjct: 428 -----KFVIDYLKDVIP----DFCKKVNFVNIYEKEK-DAFSKLYKHKIRLNLIETKDKQ 477 Query: 548 ADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVD--IDLFHARFT 605 D +PD ++ ++ A +V +I N V AQ Y +LK + Q+ I L H+R+T Sbjct: 478 FD-IPD-EIIREVLQKAKDNKRVLVILNTVGFAQSVYDKLKNSADEQLKERIFLIHSRYT 535 Query: 606 LNDRREKENRVISNFGKNGK-RNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLG 664 L DR KE I+N KN K +VG+ILVATQVVE SLD+D D L T+ CP D L QR+G Sbjct: 536 LKDRENKEFDYINNKFKNPKTEDVGKILVATQVVEASLDIDADILYTEMCPLDCLVQRMG 595 Query: 665 RLHRHH 670 R+ R + Sbjct: 596 RVLRRY 601 >UniRef50_Q57821 Uncharacterized protein MJ0376 n=3 Tax=Methanocaldococcus RepID=Y376_METJA Length = 728 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 147/619 (23%), Positives = 256/619 (41%), Gaps = 88/619 (14%) Query: 153 VEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQ-DKQAREEWISVLEALFLTPAGLSIN 211 V A+ HH + ++ D +++ L + K ++E + S+ + F L I Sbjct: 49 VFAILSHHTQLYNNLYADYQQYKKGTFLIEEIKEFIKNSKEAYESLGFSKFFEFEDLKIE 108 Query: 212 DIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAP---------------SDINALR-- 254 DIP D L W+ + + F++ D +L Sbjct: 109 DIPKDAKPLELHRLRRKYWIEANNYIKSLSFDDKIKIKSIFSFMFSILQLCDDFASLNFS 168 Query: 255 TYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEA 314 Y +DR+ VLE + + + + Y+P + Q + ++ A Sbjct: 169 EYAKDREGIFDDVLENPEIYVPTLNIDNPISFILKDYEPYKFQK--ELYNSKNKFVMLFA 226 Query: 315 PTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAH 374 P G GKTE AL +A + + +I A+PTQ T+NAM R+ +F N+ L H Sbjct: 227 PCGRGKTEGALLWALNALKNFKRNKIILAMPTQVTSNAMYDRL----VKIFGEENVGLFH 282 Query: 375 GNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPV 434 G S IK R E E+ + + N VF I + TID V+ S + Sbjct: 283 GKS-------FIKLRDSKEIEDEDDLEEIRDENFKGN--VFFKPITITTIDHVIYSFV-- 331 Query: 435 KHRFIRG---LG-IGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLP--- 487 H F + LG I SV+I DEVH Y+ Y L + + +L+S TLP Sbjct: 332 -HGFSQADFALGNIQNSVIIFDEVHYYEKYTLEHLLTLFDILRRMDIPHLLMSGTLPNFL 390 Query: 488 ---MKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEP 544 ++ + ++D GL+ P + + + W+ + + Sbjct: 391 MNNLEGYELVVDEEGLNYKPFKLKCSENHLIWKEDDEWK--------------------- 429 Query: 545 ICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARF 604 + ++ +I G +I N V+ A+ Y+ +++ +V L+H++F Sbjct: 430 -------VNENIINEIIENYKKGLSQAIILNTVERAREFYKAVRD----KVPAILYHSQF 478 Query: 605 TLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLG 664 DR +KE+ + + +N ++VATQV+E SLD+ D + ++ P D L QR G Sbjct: 479 AYKDRVKKEDEIFTLEEMRKSQNKPYVIVATQVIEISLDMSVDVMYSELSPPDALGQRAG 538 Query: 665 RLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFP 724 RLHR + +R G E + I LP ++H+ + ++ +T HI + L + Sbjct: 539 RLHRKGKDWRENGKEYKLK-IFLP-------YKHLPYSKELIEKTINHI-KFYEKPLDYR 589 Query: 725 DAYRQWLDSIYDDAEMDEP 743 D + ++D++Y D + P Sbjct: 590 DI-KDFVDNVYKDYNLSIP 607 >UniRef50_B9MLS5 CRISPR-associated helicase Cas3 n=2 Tax=Clostridia RepID=B9MLS5_ANATD Length = 775 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 129/464 (27%), Positives = 211/464 (45%), Gaps = 97/464 (20%) Query: 290 GYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQAT 349 G++ QL+ AL + ++ APTGSGKTE L +A + +I+ LP + + Sbjct: 262 GFKEFQLK----ALDFSNQNVILFAPTGSGKTEFGLNWAGR-------SKLIYTLPIRVS 310 Query: 350 ANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAW--VQCCQWL 407 NAM R+ + +F S + + H +S +L + A Q E + V + L Sbjct: 311 INAMYERL----AKIFGSNKVGILHSDSMI-YLLEKYSQSAEDVQELESLFDNVNLARNL 365 Query: 408 SQSNKKVFLGQIGVCTIDQVLISVL--PVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLL 465 S I V T DQ+ S L P + I L + S +I+DE +Y ++ Sbjct: 366 S--------FPIIVTTGDQIFTSALKWPGFEK-IYSLFL-YSKIIIDEPQSYSPESLAII 415 Query: 466 EAVLKAQADVGGSVILLSATL-PMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQR 524 L+ ++ G L+SAT+ P+ +L G D E AY Sbjct: 416 IKTLEEIVNLNGRFCLMSATVNPL-----VLKYLG---DISEYLQAYS------------ 455 Query: 525 FDLLAHPEQLPPRFS--IQPEPICLADMLPDLTMLERMIAAANAGAQ--VCLICNLVDVA 580 E+L +S + +P+ + D + ++ N G Q V +ICN V + Sbjct: 456 ------DEELKKCWSHVVSVKPLSILDCVDEI---------VNCGKQQNVLVICNTVRRS 500 Query: 581 QVCYQRLKEL--NNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVV 638 Q Y+ +KE N+ V ++L H+RF RR+KE+ ++SN KN I+++TQ+V Sbjct: 501 QEVYKAIKESIGNSDDVPVELLHSRFLEGQRRQKEHFILSNQRKNS------IVISTQLV 554 Query: 639 EQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEH 698 E SLD+D+D L T+ AD L QR+GR++R RP + P IL + G GR Sbjct: 555 EASLDIDYDVLFTELASADSLLQRMGRVYRK----RPYEGQKPNVIILTKEPSGIGR--- 607 Query: 699 IYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDE 742 +Y ++ RT++ ++ +G + + YD E++E Sbjct: 608 VYQK-EIVTRTEEFLKRFDGRKI-----------TEYDKKELNE 639 >UniRef50_C6Q963 CRISPR-associated helicase Cas3 n=1 Tax=Thermoanaerobacter mathranii subsp. mathranii str. A3 RepID=C6Q963_9THEO Length = 777 Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 125/484 (25%), Positives = 217/484 (44%), Gaps = 89/484 (18%) Query: 302 ALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASA 361 A+ ++ V+ APTGSGKTE L +A+K +I+ LP + + NAM R+ Sbjct: 272 AIELSEKSVVLFAPTGSGKTEFGLNWAFK-------SKLIYTLPIRVSINAMYERL---- 320 Query: 362 SHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAW-----VQCCQWLSQSNKKVFL 416 + +F + + H +S + ++ E+G +E V + LS Sbjct: 321 AKVFGEDKVGILHSDS----MIYLLEKHMDLERGNQELEALFDSVDLAKNLSLP------ 370 Query: 417 GQIGVCTIDQVLISVL--PVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQAD 474 I V T DQ+ S L P + I L + S +I+DE +Y ++ L+ + Sbjct: 371 --IIVTTGDQIFTSALKWPGFEK-IYSLFL-YSKIIIDEPQSYSPESLAIIIKTLEEIIN 426 Query: 475 VGGSVILLSATL-PMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQ 533 + G L+SAT+ P+ +L G + + V+ S E Sbjct: 427 LNGKFCLMSATINPL-----ILKYLGDYAEYVQAYS---------------------DED 460 Query: 534 LPPRFS--IQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKE-- 589 L R+S I + + + D + + I V +ICN V +Q YQ +KE Sbjct: 461 LKRRYSHIISIKELSILDCVAE-------IIEHAKQKNVLVICNTVKRSQEVYQVIKENL 513 Query: 590 LNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWL 649 ++ ++L H+RF +R+KE VIS+ KNG I+++TQ+VE SLD+D+D L Sbjct: 514 KKFEEIPVELLHSRFLEGQKRQKEQIVISDKRKNG------IIISTQLVEASLDIDYDIL 567 Query: 650 ITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRT 709 T+ AD L QR+GR++R R Y P IL D G G+ +Y ++ RT Sbjct: 568 FTELASADSLLQRMGRVYR-KRTYNELR---PNVIILTKDPSGVGK---VYQK-EIVDRT 619 Query: 710 QQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAE----CEKRFKAR 765 + +++ +G + D ++ + +YD + ++ +E E +++ +A+ Sbjct: 620 EAFLKKFDGNKITEYDK-KELNEYVYDIDALSSTNFISKFKKAYELLELGFRADRKIEAQ 678 Query: 766 KVLQ 769 K+ + Sbjct: 679 KIFR 682 >UniRef50_A5UJJ3 Predicted helicase n=1 Tax=Methanobrevibacter smithii ATCC 35061 RepID=A5UJJ3_METS3 Length = 734 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 102/370 (27%), Positives = 172/370 (46%), Gaps = 63/370 (17%) Query: 306 APGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLF 365 G + + APTGSGKTE + +A + + + LP A+ NAM R+ L Sbjct: 245 TKGSSFLIAPTGSGKTEASFLWADNNQTDNFSKRIFYVLPFTASINAMYNRL---VKDLG 301 Query: 366 SSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTID 425 S + ++HG + + +++S++S E E +Q KK++ + T Sbjct: 302 SDELVGISHGKASY-FIYKSVESGDYDESNFETKRIQ------NLTKKIY-RPYKILTPF 353 Query: 426 QVLISVLPVKHRFIRGLG-IGRSVLIVDEVHAYDTYMNGLLE---AVLKAQADVGGSVIL 481 Q++ VK F GL + S+LI+DE+HAYD + LL +LK++ DV + + Sbjct: 354 QLIKFFFGVKG-FEMGLSELTNSLLILDEIHAYDARVTCLLLESLKILKSKFDV--DIFI 410 Query: 482 LSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQ 541 +SATLP K L + ++ + N+ ++ + H + Sbjct: 411 MSATLPSFLK-------NLFSKELD------ISNFISLDSKELDSFTRHKVNIINN---- 453 Query: 542 PEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDID--- 598 C+ + ++++ N+G +V ++CN VD AQ Y+ KE D+D Sbjct: 454 ----CIENCC------DKILNDINSGKKVLIVCNTVDKAQFIYEWFKE-----KDVDNSA 498 Query: 599 LFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADL 658 L H+RF L DR E+ + + N +L+ TQ +E SLD+D+D L ++ P D Sbjct: 499 LLHSRFILKDR-ERIEKNLDNLN---------LLIGTQAIEVSLDIDYDVLYSEPAPLDA 548 Query: 659 LFQRLGRLHR 668 L QR GR++R Sbjct: 549 LIQRFGRVNR 558 >UniRef50_C5U6V4 CRISPR-associated helicase Cas3 n=3 Tax=Euryarchaeota RepID=C5U6V4_9EURY Length = 741 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 125/471 (26%), Positives = 211/471 (44%), Gaps = 83/471 (17%) Query: 311 VIEAPTGSGKTETALAYAWKLID---QQIADSVIFALPTQATANAMLTRMEASASHLFSS 367 +++APTG GKTE AL +++ +D ++ + V + LP + + NAM R++ S+L Sbjct: 247 ILKAPTGYGKTEAALLWSYTNLDSVRKRYPNRVFYILPYKVSINAMYERLK---SYLPEG 303 Query: 368 PNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQV 427 + L H +S++ +L+ S G E + L+ +K++ + V T Q+ Sbjct: 304 GMVALLHSSSQY-YLYVS---------GYE------YRRLTNLYRKIY-SPMKVLTPFQI 346 Query: 428 LISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQAD-VGGSVILLSATL 486 + + V + + +S+LI DE+H Y+ + G++ +L + +++SATL Sbjct: 347 MKAFFGVGFYEMELSELAKSLLIFDEIHVYEPNIIGIILGMLDILVNGYKAKALIMSATL 406 Query: 487 P------MKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSI 540 P K+ K D DP E + R V+G FD++ + E L F I Sbjct: 407 PTFLEELFKETLKAEDVKFEKEDPDE----FTRHRVRVVDG-NVFDIIQNLE-LNKNFFI 460 Query: 541 QPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLF 600 E LE+ V ++CN VD A Y+ LK N + + L Sbjct: 461 FGE-----------IKLEK---------PVLIVCNTVDRAIEVYKYLK---NKKFKVLLI 497 Query: 601 HARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLF 660 H RFT DR E V N +V+TQV+E SLD+ F+ ++++ P D L Sbjct: 498 HGRFTYGDRERLEKEVRKNIEHYD------FIVSTQVIEVSLDISFNSILSEPAPLDALI 551 Query: 661 QRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGAS 720 QR GR++RH G++ V + EG R +++Y V T + ++E+N Sbjct: 552 QRFGRVNRH-------GWKDGVIKDVYVLTEGSERDKYVYKEWMVK-NTLKVLQEIN-EE 602 Query: 721 LFFPDAYRQWLDSIYDDAE---------MDEPEWVGNGMDKFESAECEKRF 762 L + +LD +Y D+ D + N + S+E E+RF Sbjct: 603 LLRESKIQDYLDEVYKDSNKIIKSIMSAKDTTIDIFNSLKPLYSSENEERF 653 >UniRef50_A1HND8 CRISPR-associated helicase Cas3 n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HND8_9FIRM Length = 791 Score = 112 bits (279), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 115/427 (26%), Positives = 188/427 (44%), Gaps = 60/427 (14%) Query: 259 DRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGS 318 D A++V +G + + ++ LDN ++ ++L L G ++ APTG+ Sbjct: 246 DHLASAAKVDLQTGFSNVEEVLTALNIKLDNLWEHQRL------LAKTEGNAILIAPTGT 299 Query: 319 GKTETALAYAWKLIDQ-QIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNS 377 GKTE+AL +A D+ + V F LP +A+ AM R+ +F + + HG S Sbjct: 300 GKTESALLWAALQRDKNKTCGRVFFLLPYRASMQAMAARL----GMVFGKDAVAIIHGKS 355 Query: 378 RFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHR 437 +L++ + + E A V Q ++ ++ + + VC+ Q++ S K Sbjct: 356 LI-YLYEKLLDQ---EYSPANALVTAKQ--QEALNRLNVAFLRVCSPYQLIKSFFAQKGY 409 Query: 438 FIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQ---ADVGGSVILLSATLPMKQKQKL 494 + L+ DE+HAYD + +L ++ AQ V+ +SATLP Q + Sbjct: 410 ETIICSALSAQLVFDEIHAYDPKITAML--LVAAQFLCERFNARVLFMSATLPSHLLQSI 467 Query: 495 LDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDL 554 + PV+ P ++W R L P S+ PE + Sbjct: 468 QKMFPSIRAPVK-----PAVDWLKQVKRHRISRL-------PFASLSPETV--------- 506 Query: 555 TMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQV-DIDLFHARFTLNDRREKE 613 + I AA V + N VD A RL + ++ D+ L H+RF DR KE Sbjct: 507 ----QHIKAAAKNKSVLAVVNRVDRAI----RLANMLRKEISDVVLLHSRFNARDRSRKE 558 Query: 614 NRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKY 673 ++ G +LVATQVVE SLD+D+D + P + L QR+GR++RH ++ Sbjct: 559 KQLAPK--------PGHVLVATQVVEVSLDIDYDIGFFEPAPLEALLQRMGRVNRHGKQV 610 Query: 674 RPAGFEI 680 PA I Sbjct: 611 HPADVYI 617 >UniRef50_A7VC53 Putative uncharacterized protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VC53_9CLOT Length = 789 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 134/560 (23%), Positives = 234/560 (41%), Gaps = 111/560 (19%) Query: 269 ELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYA 328 EL ++ K+ + N R+LQV + + V+ APTGSGKTE AL +A Sbjct: 246 ELHSDIAEKKLCSTIRDYFSNSL--RELQVFMQ--EHSDDNVVVIAPTGSGKTEAALLWA 301 Query: 329 WKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKS 388 + + LP + ++NA+ +R++ + ++ L H +S ++ Sbjct: 302 N-------GEKGFYTLPLKVSSNAIYSRIKDR----YMYKDVALLHSDSLSSYF------ 344 Query: 389 RAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSV 448 G + + Q+ K+F + VCT+DQ+ V I + S Sbjct: 345 -----DGTDGQFTDGNTRYEQA--KLFSYPLTVCTVDQLFKFVYKAPGTEIFAATLKYSK 397 Query: 449 LIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLP-----MKQKQKLLDTYGLHTD 503 LI+DE+ +Y + L L + G +++AT P +K +L+ Sbjct: 398 LIIDEIQSYSPKIVAALIYGLSELKQMEGKFAIITATFPPVLEFFMRKYRLI-------- 449 Query: 504 PVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAA 563 + Y I++ G R + E+ +R IA Sbjct: 450 ---KDRDYIFIDFSATMGTDRHKIALFHEEFD---------------------FDR-IAE 484 Query: 564 ANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKN 623 +V +ICN V AQ Y+ EL+ ++ L H+R+ + R++ ++I +F N Sbjct: 485 DGYKKKVLVICNTVSKAQKVYE---ELSQRTDEVFLLHSRY-IRKHRDQLEKMIMDFSSN 540 Query: 624 GKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVA 683 + + I V TQ+VE SLD+DFD L T+ C AD L QR+GR +R +K +I A Sbjct: 541 DE--MTGIWVTTQIVEASLDIDFDVLYTEMCTADSLLQRMGRCNRAGKK------DITDA 592 Query: 684 TIL--------LPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIY 735 +L + +G+G IY + + R+ Q +E NG LF Q+++ +Y Sbjct: 593 NVLIYVNYSGCMKNGKG------IYDS-DIYDRSVQLLEAYNG-KLFSEKDKVQYMNEVY 644 Query: 736 DDAEMDEPEW---VGNGMDKFES---------AECEKRFKARKVLQWAEEYSLQDNDETI 783 D + + + + KF+S + ++ F+ K + + Q+N I Sbjct: 645 DVDALKNTAYFQMIKRNLAKFKSLQPLDYTSKKDIDEDFRGIKSITVIPDRIYQENQYLI 704 Query: 784 LAVTRDGEMSLPLLPYVQTS 803 A+T S+ PYV ++ Sbjct: 705 EAIT-----SVLDTPYVDSN 719 >UniRef50_A5ILM5 CRISPR-associated helicase, Cas3 family n=4 Tax=Thermotogaceae RepID=A5ILM5_THEP1 Length = 763 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 102/360 (28%), Positives = 163/360 (45%), Gaps = 52/360 (14%) Query: 311 VIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNL 370 V+ APTG+GKTE AL ++ +F LP Q+ N M R++ + F N+ Sbjct: 263 VLVAPTGAGKTEFALMWS--------KGKTLFTLPLQSATNMMYERVK----NYFGEENV 310 Query: 371 ILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLIS 430 L H ++ F S + E+ + Q + QS + F + T DQV S Sbjct: 311 GLLHSDAAVYLFFSSF-----LKNNFEDREGEVLQIVEQS--RFFSHPFVISTGDQVFPS 363 Query: 431 VLPVK-HRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMK 489 L + I + + S L++DE+ AY ++ + +GG ++++ATLP Sbjct: 364 ALKYPGYEMIYSI-LANSYLVIDEIQAYSPEAAAIIVKTAEDVKQLGGHFLIMTATLP-- 420 Query: 490 QKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLAD 549 G D + + N + V E +P ++ L Sbjct: 421 ---------GFIRDEILKRAELEEKNIKDVY-----------EDIPQGRLLR----NLVK 456 Query: 550 MLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDR 609 + L +E+ + G +V ++ N V A Y++L E + D+ L H+R TL DR Sbjct: 457 VEKSLDPVEKAVEFFKKGCRVLIVRNTVRNAIETYRQLVEKLGKE-DVLLIHSRMTLEDR 515 Query: 610 REKENRVISNFGKNGK-RNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHR 668 R E ++ ++ K RN+ ILV+TQVVE S+D+DFD L+T PAD L QR+GR+ R Sbjct: 516 RRIEE-ILESYRPGAKGRNI--ILVSTQVVEASMDIDFDILLTDIAPADSLVQRMGRIFR 572 >UniRef50_UPI0000F51764 CRISPR-associated helicase Cas3 n=1 Tax=Ferroplasma acidarmanus fer1 RepID=UPI0000F51764 Length = 746 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 115/472 (24%), Positives = 201/472 (42%), Gaps = 78/472 (16%) Query: 311 VIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNL 370 +I++PTGSGKTE +L ++ + +++ LPT T+N + R++ + Sbjct: 263 IIQSPTGSGKTEASLLWS-----KYNNGRIVYILPTMVTSNKIFERLKQIFGDIVG---- 313 Query: 371 ILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLIS 430 + H S L A +A+ + K F I V T+DQ+L S Sbjct: 314 -IQHSTSL---LLMDTDIDADKNNYNHDAFARFYY-------KTFSSPIMVSTVDQLLYS 362 Query: 431 VLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQ 490 + + G S +I DE+HAYD Y L+ + V+++SAT+P Sbjct: 363 LFNINRWDSVFFNSGISNVIFDEIHAYDPYTTSLIIEYINKAHIFNQRVLIMSATIP--- 419 Query: 491 KQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADM 550 L D T + +N + F I + + Sbjct: 420 -DILKDFIKCKT--------------KKINFVDK------------EFDINEIRYNVNVI 452 Query: 551 LPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQ-VDIDLFHARFTLNDR 609 D+ +I ++ +I N + A+ Y ++++++ + + LFH++FT NDR Sbjct: 453 DGDINNSIDIIKKHKDIKKILVIANTIKTAKYLYSQIRDIDEIKDKKVVLFHSQFTYNDR 512 Query: 610 REKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRH 669 +EK + ++ I +ATQVVE SLD+DFD LITQ P D L QR GR++R Sbjct: 513 KEKSELL--------EKEDNIIAIATQVVEVSLDIDFDLLITQIAPPDALIQRFGRVNRR 564 Query: 670 HRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQ 729 +K F + + E +++Y N +M +T + + N S D+ ++ Sbjct: 565 GKKGNTKIF-------IYKNCEN---DKYVYKN-ELMKKTFDYFNKYNYKSN--TDS-KK 610 Query: 730 WLDSIYDDAEMDEP-----EWVGNGMDKFESAECEKRFKARKVLQWAEEYSL 776 ++ IY+D E E V N + + + + + +K Q AE+++L Sbjct: 611 LINEIYNDNEYKENLKNAYTEVKNKIYEIQVEDLKSVYKFNIEEQIAEKHNL 662 >UniRef50_B5YAX8 CRISPR-associated helicase Cas3 n=1 Tax=Dictyoglomus thermophilum H-6-12 RepID=B5YAX8_DICT6 Length = 755 Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 112/411 (27%), Positives = 181/411 (44%), Gaps = 71/411 (17%) Query: 314 APTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILA 373 APTGSGKTE A+ + D ++ LP + + NAM R++ +F + L Sbjct: 268 APTGSGKTEFAVNWIGN-------DKAVYTLPLRVSVNAMYERLK----EIFGKDKIGLL 316 Query: 374 HGNSRFNHLFQSIKSRAITEQGQEEAW-VQCCQWLSQSNKKVFLGQIGVCTIDQVLISVL 432 HG+ + L + R + QE V + LS I V T DQ+ IS Sbjct: 317 HGDCAYYGLDEI---RTLENDFQEHLHHVTSSRQLSYP--------ITVSTADQIFISFF 365 Query: 433 --PVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQ 490 P + + ++VDE AY + ++ LK +VGG L+SAT Sbjct: 366 HFPGYEKIFSIFPYTK--IVVDEPQAYTSESLAVIVEGLKRIDNVGGKFCLMSATFYPIL 423 Query: 491 KQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADM 550 + +L D + NNS++ + R+ +PE+ + DM Sbjct: 424 RNELQDISEIIEVEASNNSSHFI----------RY----YPEK------------DIEDM 457 Query: 551 LPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRR 610 + ++ I G +V +I N V AQ Y L+ +N ++ ++L H+RF DR Sbjct: 458 ISEI------IENYKKGKKVLVITNTVKKAQSIYNLLR--SNKELKVNLLHSRFIWKDRN 509 Query: 611 EKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHH 670 KE ++ + K + I ++TQ+VE SLD+DFD L ++ P D L QR+GR++R Sbjct: 510 MKEKQIFLD----EKSHAPCIWISTQIVEASLDIDFDILFSELAPLDTLIQRMGRVYRK- 564 Query: 671 RKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASL 721 R +IP I G+ G+ H+Y + ++ T + E+N L Sbjct: 565 ---REYSEDIPNIVIAGSLGKPSGK-SHVYDSA-LIDATHNILSEINTKKL 610 >UniRef50_D2QT48 CRISPR-associated helicase Cas3 n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QT48_9SPHI Length = 762 Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 129/522 (24%), Positives = 226/522 (43%), Gaps = 104/522 (19%) Query: 314 APTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRM-----EAS------AS 362 APTGSGKTE +L +A + ++ + +++ LPT+ TAN++ R+ +AS + Sbjct: 281 APTGSGKTEASLLWASQ---REGFEKIVYLLPTRVTANSLYLRLGEYFGKASDGVDDYTA 337 Query: 363 HLFSSPNLI---LAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQI 419 + SS L L S FN+L ++ +A+T Sbjct: 338 VVHSSAKLFRLELDETYSNFNYLREAAFFKAVT--------------------------- 370 Query: 420 GVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLK-AQADVGGS 478 V T+DQ+L + ++ + R+ +I+DEVHAY Y GL+ A ++ + + Sbjct: 371 -VATVDQMLTQGFNLGWWEMKTFHLFRAKVIIDEVHAYAPYTLGLIVASIRYLRQNFQTQ 429 Query: 479 VILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRF 538 +++AT+P QK + L T L D L R V + + +QL P Sbjct: 430 FYIMTATMP--QKLQALLTRELGNDVTVLRDQELLDKKRNVFHVEDRTI----DQLRP-- 481 Query: 539 SIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDID 598 D+ DL AG +V ++ N VD A Y + + Sbjct: 482 ----------DIEQDL----------KAGKKVLVVVNTVDEAIRLYDQYADYKPI----- 516 Query: 599 LFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADL 658 +H+RF + R EKE +++N + K G +L+ATQVVE SLD+D+ L T++ P D Sbjct: 517 CYHSRFIVKHRTEKEQAILNNEKEKPKE--GFLLIATQVVEVSLDIDYQSLYTENAPIDA 574 Query: 659 LFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNG 718 + QR GR++R R + P ++ P E +H + Y ++ T +++ G Sbjct: 575 IIQRAGRINRKRR-------DEPGKVVVFPHSEVAEKHVYDYP-AGILNTTLDVLKQHQG 626 Query: 719 ASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQD 778 ++ D ++ +Y D ++ E + + K+E +K + Y + Sbjct: 627 VAVSEQDLL-NMVEEVYKDWNVENEELYKDELSKYERLVRDK---------CSYLYDFSE 676 Query: 779 NDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHE 820 + E + TR+G ++ ++P +L+ V E HE Sbjct: 677 DMEQVF--TREGLDTVSIIP---DCFKPELVSASVLEKSKHE 713 >UniRef50_Q5JGA4 DEAD/DEAH box helicase, fused to N-terminal HD domain n=1 Tax=Thermococcus kodakarensis RepID=Q5JGA4_PYRKO Length = 740 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 100/382 (26%), Positives = 170/382 (44%), Gaps = 61/382 (15%) Query: 294 RQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLI---DQQIADSVIFALPTQATA 350 R+L+ L A + G ++ APTG GKTE AL +A + + I + + LP +A+ Sbjct: 234 RKLRPLQVAASNSEGNLLLRAPTGYGKTEAALLWANRNAFRNKEGITSRIFYVLPYKASI 293 Query: 351 NAMLTRMEASASHLFSSPNLI-LAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQ 409 NAM RM +FS P+L+ + H ++ F +L+ S + LS Sbjct: 294 NAMHQRM----MDIFSDPSLVGVLHSSASF-YLYTSALE---------------YKRLSS 333 Query: 410 SNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVL 469 K++ + V T Q++ + V + + S++I DE+HAY+ + G++ A+L Sbjct: 334 LYHKIY-TPLKVTTPFQLMKAFFGVGFHEMLKTELSGSLIIFDEIHAYEPNVLGIILAML 392 Query: 470 KAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWR--GVNGAQRFDL 527 K + ++++ATLP ++ + DT A R ++G Sbjct: 393 KELEGLKAKTMVMTATLPDFLEELITDTADFRELKTSAEEADKFTRHRVHVIDGGME--- 449 Query: 528 LAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRL 587 + +++ DL + +++ + G + CN VD A Y+ L Sbjct: 450 ------------------SVGELIADLGIHKKVEETSRPG---LVACNSVDQAVRVYKEL 488 Query: 588 KELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFD 647 E + L H+RFT DR KE ++ + +VATQVVE SLD+ F Sbjct: 489 SE----DYRVLLLHSRFTYGDRETKEKLLLEKMSEYD------FVVATQVVEVSLDLSFS 538 Query: 648 WLITQHCPADLLFQRLGRLHRH 669 ++T+ P D L QR GR++R Sbjct: 539 TILTEPAPLDALIQRFGRVNRQ 560 >UniRef50_Q57828 Uncharacterized protein MJ0383 n=2 Tax=Euryarchaeota RepID=Y383_METJA Length = 614 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 119/458 (25%), Positives = 186/458 (40%), Gaps = 111/458 (24%) Query: 308 GLTVIEAPTGSGKTETALA-YAWKLIDQQ-IADSVIFALPTQATANAMLTRMEASASHLF 365 G VIE PT GKTE A+ Y ++ I +I+ LPT++ + R+ + Sbjct: 34 GRVVIEIPTAGGKTEAAIIPYLYQFISNDWKVPRLIYVLPTRSLVEKQVERIRNYIKKIL 93 Query: 366 SSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTID 425 I + + L + I VQ L +++ FLG + + T D Sbjct: 94 E----IKGYSKDKVEELAKKI--------------VQVEYGLEETH--AFLGFVVLTTWD 133 Query: 426 QVLISVLP---VKHRFIRGLG-IGRSVLIVDEVHAY---DTYMNGLLEAVLKAQADVGGS 478 L + V RF G I +S+++ DE+ Y YM L+ V+K + Sbjct: 134 TFLYGLAAHRTVGDRFTFPCGAIAQSLVVFDEIQMYQDESLYMPRLIGLVVKRLVEANVP 193 Query: 479 VILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRF 538 ++ ++ATLP + K+ L G+H + P + P Sbjct: 194 LVFMTATLPTELKKIL----GIHDE--------------------------EPITVNPED 223 Query: 539 SIQPEP----ICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQ 594 + +PE + + L D + + A N G +V +I N V+ A Y+++K+L N+ Sbjct: 224 TKKPERGEVVVEFKEKLSDEELSNEIKKAINEGKKVLIIKNTVNSAIEVYEKVKQLGNSL 283 Query: 595 VDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDV-DFDWLITQH 653 L H+RFT+ DR EKE + + I+VATQVVE LD+ + +IT Sbjct: 284 ----LLHSRFTVEDRAEKEKDI----------DKAEIIVATQVVEAGLDLTNVGLVITDL 329 Query: 654 CPADLLFQRLGRLHRH---------------------HRKYRPAGFE-IPV--ATILLPD 689 P D L QR+GR R HR+ GF+ IP A + L + Sbjct: 330 APLDALIQRIGRCARRKGERGKVIVVLPNFNEKINEDHREKVILGFKNIPFENAYVTLVN 389 Query: 690 GEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAY 727 + YG RV+ T + IEE G S P + Sbjct: 390 NKDYG---------RVIELTIETIEEKKGKSKIVPKKF 418 >UniRef50_C9L3W2 CRISPR-associated helicase Cas3 domain protein n=2 Tax=Clostridiales RepID=C9L3W2_RUMHA Length = 793 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 115/414 (27%), Positives = 180/414 (43%), Gaps = 64/414 (15%) Query: 269 ELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYA 328 E++ + + + V L N Y R +Q + V L VI APTGSGKTE AL + Sbjct: 252 EINPDLEKRELIKNVEEALKN-YNLRPVQTYMKE-NVEQNLVVI-APTGSGKTEAALLWL 308 Query: 329 WKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKS 388 + + LP + ++NA+ R++ + ++ L H +S +L +S + Sbjct: 309 N-------GEKGFYTLPLRVSSNAIYERIKVR----YRYEDVALLHSDSMQVYLKESDDT 357 Query: 389 RAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSV 448 T + E A K+ + +CT+DQ+ V I + S Sbjct: 358 D--TYKKYERA-------------KLLANPLTICTVDQLFKFVYKALGTEIFPATLKYSK 402 Query: 449 LIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENN 508 +++DE+ AY + + LK +GG +++AT P PV Sbjct: 403 IVLDEIQAYSPQVIAAIIYGLKQIVSMGGKFAIITATFP----------------PV--- 443 Query: 509 SAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGA 568 L ++ +G LL FS E + + D M IA Sbjct: 444 ----LEHFMKQHG-----LLKEENYQFQDFSNSSEWLRHKVDIRDGEMDIDEIAEQGLEK 494 Query: 569 QVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNV 628 +V +ICN V AQ Y+ L+E ++ L H+R+ DR + E ++I F ++ R+V Sbjct: 495 KVLIICNTVSKAQEIYKELEEWTE---EVHLLHSRYIRRDRNQLE-KMIMQFSED--RDV 548 Query: 629 GRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPV 682 I V TQ+VE SLD+DFD L T+ C AD L QR+GR +R R Y+P I V Sbjct: 549 AGIWVTTQLVEASLDIDFDILYTEMCTADSLLQRMGRCNRKAR-YQPEEANIIV 601 >UniRef50_D1QSB0 DEAD/DEAH box helicase n=1 Tax=Prevotella oris F0302 RepID=D1QSB0_9BACT Length = 744 Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 102/371 (27%), Positives = 164/371 (44%), Gaps = 67/371 (18%) Query: 310 TVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPN 369 ++ APTG+GKTE AL + ++ + V + LP A+ NAM R+ + SS Sbjct: 239 VILNAPTGAGKTEAALVWLKNQLEHRGQGRVYYILPYTASINAMYKRLNSCIGD--SSKK 296 Query: 370 LILAHGNSRFNHLFQSIKSRAI-TEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVL 428 + L HGN +L +++ +I T + QE+ + K L + + T Q+L Sbjct: 297 VGLLHGN-LMQYLDLQMENHSIDTIELQEQV----------EDFKSMLMPLKIVTPFQLL 345 Query: 429 ISVLPVKHRF-IRGLGIG-----RSVLIVDEVHAYDTYMNGLLEAVLK-AQADVGGSVIL 481 KH F I+G G I+DE+HAY+ + + +L A + V + Sbjct: 346 ------KHLFGIKGFEKGIFEWSGGYFIIDEIHAYEVKVFAQIIVLLSFAVQYLKVRVHI 399 Query: 482 LSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQ 541 ++ATLP + K+ G + + + + Y +++R + Sbjct: 400 MTATLPTFMRCKIASVIGPYQEIIADKQLY--LSFR-----------------------R 434 Query: 542 PEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFH 601 CL +L D L+ + N G +V ++CN VD +Q+ Y+ L L H Sbjct: 435 HRLFCLDGLLTD--YLDNIQVDINQGKKVLVVCNTVDESQMVYKYLHASKKV-----LLH 487 Query: 602 ARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQ 661 RF DR + E ++ K + +LV TQ +E SLDVDFD + T P D L Q Sbjct: 488 GRFCAEDRFKNEVKL--------KEDDVSLLVGTQAIEISLDVDFDLIYTAPAPLDALLQ 539 Query: 662 RLGRLHRHHRK 672 R GR++R K Sbjct: 540 RFGRVNRKREK 550 >UniRef50_D1JP52 Metal dependent phosphohydrolase n=2 Tax=Bacteroides RepID=D1JP52_9BACE Length = 719 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 96/366 (26%), Positives = 162/366 (44%), Gaps = 67/366 (18%) Query: 310 TVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPN 369 T ++APTG+GKT+ L ++ + + LP QA+ NAM R+ + + Sbjct: 242 TFVKAPTGAGKTDFLL--------KRCQGRIFYTLPFQASINAMYERIRRDLNGVVEDVR 293 Query: 370 LILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIG----VCTID 425 L+ H SR + +G E+AW +KV +IG V T Sbjct: 294 LL--HSMSR------------LVIEG-EKAW----------EEKVIQDKIGASIKVLTPH 328 Query: 426 QVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSAT 485 Q+ L K + +I+DE+H Y M ++ +++ +G + + +AT Sbjct: 329 QLASVSLGTKGYETLLFDLCGCDIILDEIHTYSDIMQSIILTMIEVLVHIGCRIHVGTAT 388 Query: 486 LPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPI 545 +P + +QK+LD G + Q+ +LL+ R+ + Sbjct: 389 MPSELEQKILDILGR-------------------DQTQQVELLSSVLDSFNRYIVHK--- 426 Query: 546 CLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFT 605 + D L +L A ++ ++CN V AQ+ ++++ EL +VD L H+RF Sbjct: 427 -VTDFYSVLPVLRE---AIENDQKILIVCNRVRNAQILFEKIDELY-PEVDKMLIHSRFK 481 Query: 606 LNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGR 665 DR E + + K + I+V+TQVVE SLD+ FD +IT+ P D L QR GR Sbjct: 482 RKDRNRLEKELQDIYNKVLQ---ACIVVSTQVVEVSLDISFDMMITETAPIDALIQRFGR 538 Query: 666 LHRHHR 671 ++R + Sbjct: 539 INRKRK 544 >UniRef50_B1B9K1 Crispr-associated helicase Cas3 domain protein n=2 Tax=Clostridium RepID=B1B9K1_CLOBO Length = 761 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 104/397 (26%), Positives = 167/397 (42%), Gaps = 57/397 (14%) Query: 274 VSNKRCYEGVHALL-DNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLI 332 + N+ +E L + G++P +LQ + + +I A TG GKTE AL + Sbjct: 215 IKNEDLFEKTSKFLKEGGFKPNKLQEYM--INHQDDNNIIRASTGIGKTEAALFWIGN-- 270 Query: 333 DQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAIT 392 + F LP + + NA+ R+ + F L H ++ +L R Sbjct: 271 -----NKGFFTLPLKVSINAIFDRIIEKIN--FPKEKTGLLHSDTSSEYL-----KRNNN 318 Query: 393 EQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVD 452 E E+ V + LS I VCT+DQ++ + + ++ + S L++D Sbjct: 319 ELNMEQ--VDRTKQLSLP--------ITVCTLDQLVDFIFKYEGYELKLATLSYSKLVID 368 Query: 453 EVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYP 512 E+ Y + G L LK ++GG +++ATLP + Y + +E N P Sbjct: 369 EIQMYSPELVGFLIVALKHITEMGGKFSIVTATLPP------IFLYFIDKQNIEYNKPDP 422 Query: 513 LINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCL 572 ++ V G QL R + E I + I +V + Sbjct: 423 F--YKEVEGKI---------QLRHRIKVLQEDINI-----------EHIKNNYKNKKVLI 460 Query: 573 ICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRIL 632 I N V AQ Y L + +I L H+RF R KE +++ G ++ G I Sbjct: 461 IVNTVKQAQKLYDVLNNEIKDETNISLLHSRFIKKHRTIKEEQILE-LGDLKNKHCG-IW 518 Query: 633 VATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRH 669 + TQVVE SLD+DFD L T+ L QR+GR++R+ Sbjct: 519 ITTQVVEASLDIDFDVLYTELSDISGLLQRMGRVYRN 555 >UniRef50_Q0SUG1 CRISPR-associated helicase Cas3 domain protein n=4 Tax=Bacteria RepID=Q0SUG1_CLOPS Length = 736 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 95/367 (25%), Positives = 166/367 (45%), Gaps = 51/367 (13%) Query: 311 VIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNL 370 ++ A TG GKTE L + + F LP + NA+ R+ N Sbjct: 227 MVVAQTGMGKTEAGLHWIGN-------NKGFFILPLKTAINAIYDRV----------SNG 269 Query: 371 ILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLIS 430 I+ N+ H I S +++ + + K++ + I + T+DQ+ Sbjct: 270 IVKENNNEEKHKVALIHSDSLSYYISQNEDTNIVLDHHREGKQLSI-PISIATLDQIFDF 328 Query: 431 VLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQ 490 V K ++ + S +++DE+ Y + L +K +GG V +L+ATL Sbjct: 329 VFKYKGYEVKLATLSYSKVVIDEIQMYSADLLAYLILGIKTIIRLGGKVAILTATLAPFV 388 Query: 491 KQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADM 550 K LL E+N+ + VN +R +L + +++ AD+ Sbjct: 389 KDLLL----------EDNNKLGFVEGTFVNELKRHNLKIYDDKIN------------ADV 426 Query: 551 LPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRR 610 + + + + +N ++ ++CN + AQ Y LK+ N ++I H++F DR Sbjct: 427 IYNKYIDNKEKKISN---KILVVCNTIKKAQEIYNELKDKNIDNLNI--LHSKFIKRDRA 481 Query: 611 EKENRVISNFGKNGKRNVGR-ILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRH 669 KE +++ FGK N+G I ++TQ+VE SLD+DFD+L T+ + LFQRLGR +R Sbjct: 482 YKEEQILE-FGKTN--NIGDGIWISTQIVEASLDIDFDYLFTELSDINALFQRLGRCNR- 537 Query: 670 HRKYRPA 676 + +PA Sbjct: 538 -KGVKPA 543 >UniRef50_UPI0001AEDDCA helicase n=1 Tax=Streptomyces albus J1074 RepID=UPI0001AEDDCA Length = 910 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 163/693 (23%), Positives = 267/693 (38%), Gaps = 67/693 (9%) Query: 11 WGKSS---KSLTKGNDIHLLIYHCLDVAAVADCWWDQSVV--LQNTFCRNEMLSKQRVKA 65 WGK + K G+ H L+ H LD AAVA+ WD+ + +N ++ ++ +A Sbjct: 8 WGKGAGLGKDAHGGDHAHPLVCHLLDTAAVAEVVWDELLTEHQRNIVAAALHVTNEQARA 67 Query: 66 WLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKF---------NHGA 116 F+ LHDIGK + FQ + TP S + F +H A Sbjct: 68 LAAFWAGLHDIGKIRVPFQLHENGPRRADSGKTPRAYELSVEPGYAFGDQAARDGQSHEA 127 Query: 117 AGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGF----ILHSQDQDKS 172 A +W + + Q +G + + P V + G HG ++H +D Sbjct: 128 AAHWWL---AGAFQEIG----YPSSRRRPQSQLSHAVAQLLGGHGGRFHPVVHEKDARCP 180 Query: 173 RWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLG 232 P A + ++ + + + P G + P+ + +L G +L+DWL Sbjct: 181 LARHPGLGAGSWEEQRRVHFDEVRRVVGATSVPQG----RMTPEAAVVLTGVVTLSDWLA 236 Query: 233 SWTTTNTFLFNEDA----PSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHAL-L 287 S E+ P D++A Y+Q + A +L + L+ A + Sbjct: 237 SVEEGIRARLREEGWAGTPEDLDA---YWQVARAAAPGLLRQTDLLGTGFAQPPAPAPGM 293 Query: 288 DNGY---QPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFAL 344 ++G RQ+ LV PG+ V+ A +TE L A L A + +AL Sbjct: 294 ESGLLASMARQVPDLVAEQ--GPGMVVVTAAPSEERTEAILRAAAVLGHAANARGLFYAL 351 Query: 345 PTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQE------E 398 PT + A+ + ++ A + P L +S ++ A + E E Sbjct: 352 PTGSAADTHMAQVNDFAERALTGPWRSLLLHSSSRLKPAEAAAGWAHAQMTDEINAEPGE 411 Query: 399 AWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYD 458 WV S+ + L +G T+D++L +VLPVK +R + V++VDE HA Sbjct: 412 EWVASANSWLNSHHRALLAALGTGTVDELLQAVLPVKFNVMRLFALSSKVVVVDEAHARG 471 Query: 459 TYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTY----GLHTDPVENNSAYPLI 514 + + + + A + V+ L+AT + +L Y G ++PVE P Sbjct: 472 AWGHQFMLRFQEWAAALRIPVV-LAATAADRSVDAMLAAYRRGAGGGSEPVEQPRRLP-- 528 Query: 515 NWRGVNGAQRFDLLAHPEQLPPRFSIQPE-PICLADMLPDLTM---LERMIAAANAGAQV 570 W V+ AH Q P F I + D P + L M+AA A V Sbjct: 529 AWSFVDAGSGK---AHLPQQPAGFCRDSTLSITVVDGTPYAEIRAALAPMVAAGEGRAAV 585 Query: 571 CLICNLVDVAQVCYQRLKE-LNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVG 629 V ++RL E L QV L H + DR + F G+ Sbjct: 586 YRPTPAEAVR--TFRRLSEDLPGAQV--ILIHEQMRNKDRWRRLAACRRAFAAEGEVCGP 641 Query: 630 RILVATQVVEQSLDVDFDWLITQHCPADLLFQR 662 +LV T ++E S + D +++ P L R Sbjct: 642 SVLVTTPMLEHSRGLPADLVVSGPAPLAKLLAR 674 >UniRef50_C9M4E9 CRISPR-associated helicase cas3 domain protein n=1 Tax=Lactobacillus helveticus DSM 20075 RepID=C9M4E9_LACHE Length = 809 Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 109/424 (25%), Positives = 185/424 (43%), Gaps = 69/424 (16%) Query: 311 VIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNL 370 V+ TG GKTE+AL + +D + F LP ++ N++ R+ S NL Sbjct: 265 VVVGQTGLGKTESALRW----LDNSKS---FFVLPLKSAINSIYDRISGIVFQNKSHENL 317 Query: 371 ILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLIS 430 L H + + ++A++E+ +E + +++++ ++ + Q+ V T+DQ+ Sbjct: 318 ALLHSD---------MMAKALSEKFDDEDNFE--EFVNE--ERSWSKQLSVATLDQIFNF 364 Query: 431 VLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQ 490 V K+ + + + +++DE+ Y + G L L GG +++ATLP Sbjct: 365 VYHYKNYEPKLATLAYAKVVIDEIQMYSPDLLGYLIYGLGEIQKFGGKFEIMTATLP--- 421 Query: 491 KQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADM 550 P LI+ NG + F HP L P+ + + + L Sbjct: 422 -------------PF-------LIDLLESNGLE-FKQAPHP-FLDPKVNHRHKVKVLHKQ 459 Query: 551 L--PDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLND 608 + D+ L+R + ++CN V A Y LK+ + D+ L H+RF D Sbjct: 460 INSDDIINLDR-------HQKTLVVCNTVKSATELYSELKQKGVS--DVHLIHSRFIRKD 510 Query: 609 RREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHR 668 R E+E ++ FG+ + G I + TQVVE SLD+DFD LIT+ LFQR+GR Sbjct: 511 RNEREKEILE-FGQKENHSSG-IWIGTQVVEASLDIDFDMLITELSELCGLFQRMGRC-- 566 Query: 669 HHRKYRPAGFEIPVATILLPDG-----EGYGRHEHIYSNVRVMWRTQQHIEELNGASLFF 723 YR +E + + DG G + Y + R H+ E++ +L Sbjct: 567 ----YRKRNYEGKEPNVYVFDGGDKLTSGIHESKQEYDDKRYHSVVDYHLFEISKRALAQ 622 Query: 724 PDAY 727 D Y Sbjct: 623 VDGY 626 >UniRef50_C8S7A2 CRISPR-associated helicase Cas3 n=1 Tax=Ferroglobus placidus DSM 10642 RepID=C8S7A2_FERPL Length = 542 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 116/478 (24%), Positives = 202/478 (42%), Gaps = 116/478 (24%) Query: 277 KRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALA--YAWKLIDQ 334 K +E +++L ++G G+ VI+APT SGKTE A+A +A + Sbjct: 19 KEAFEKIYSLSEDG-----------------GVVVIKAPTASGKTEAAVAPYFAGVYTGE 61 Query: 335 QIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQ 394 +I+ LPT+A ANA R+E A L +++ HGN Sbjct: 62 YPFAKLIYVLPTRALANAQKDRLEELARKLGLKLKIVVDHGNV----------------- 104 Query: 395 GQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIR----GLGIGRSVLI 450 +K + G + VCT+D + ++ R I S++I Sbjct: 105 ---------------YDKPMLNGDVVVCTLDTFIYGYASLRTFGYRLHYPTSSIATSLVI 149 Query: 451 VDEVHAY---DTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVEN 507 DEV + + Y ++ + K + ++++ATLP K ++ L + + D E Sbjct: 150 FDEVQMFQDEEYYTPKIIGRIFKYLYNSRVPFVVMTATLPEKLEKILFEDNRVKVD--EE 207 Query: 508 NSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAG 567 N ++ +R G+ L D +LE + + + Sbjct: 208 NV---IVCYRSKRGSVNVGWL------------------------DKILLESLNSFVDEI 240 Query: 568 A---QVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDR--REKENRVISNFGK 622 A +V +I N V Q Y+ LKE + +I L H+R T +R REK + + F Sbjct: 241 ANTKKVGIILNTVPRVQKTYELLKEHLKNEKEIILLHSRMTAQEREKREKMLQELDEF-- 298 Query: 623 NGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPV 682 I+VATQV+E LDV + ++T+ PAD L QR+GR+ R + A Sbjct: 299 --------IVVATQVIEAGLDVSLNLMLTELAPADALIQRIGRVARRENEEGNA------ 344 Query: 683 ATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEM 740 I+ GE + YS+ +++ +T+ +EE+ G L + ++ ++ +Y++ E+ Sbjct: 345 --IIFDVGESF----EPYSD-KIIKQTRDVVEEI-GECLNNLNKTQEIVNRVYENVEI 394 >UniRef50_B5YIV2 CRISPR-associated helicase Cas3 n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YIV2_THEYD Length = 728 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 98/359 (27%), Positives = 154/359 (42%), Gaps = 67/359 (18%) Query: 310 TVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPN 369 V+ A TG+GKTE Y+ I+ Q A + L + N M R + +F N Sbjct: 237 VVLVASTGTGKTE----YSMNWINGQKA---FYLLGIRTAVNEMYRRFK----DIFGE-N 284 Query: 370 LILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLI 429 + L HG S I + EE +V+ + + + + V T DQ++ Sbjct: 285 VSLLHGEI----------SNIIEDDDTEERYVERIETARKLS-----TPLTVATADQLVT 329 Query: 430 SVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMK 489 SV + L S +++DE+ ++ + LK +G ++++ATLP Sbjct: 330 SVFKYNGFEMTYLTASYSKIVLDEIQSFSPDSIAAIMVFLKEVHRLGSKFLIMTATLPPF 389 Query: 490 QKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPR---FSIQPEPIC 546 K++L + N +P P LP + ++ EPI Sbjct: 390 IKEELKEL---------QNVEFP-----------------EPVLLPNKRHFITVYDEPI- 422 Query: 547 LADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTL 606 D L M+++ +G ++ ++CN V AQ Y LK N + L H+R+ L Sbjct: 423 --DSERSLKMIDKNFK---SGKKILIVCNTVKKAQQMYDMLKNFNPS-----LLHSRYIL 472 Query: 607 NDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGR 665 DR+ KE+R N ++ I +ATQVVE SLD+DFD L T+ P D L QR GR Sbjct: 473 KDRKNKESRDHGIMAVNNPKHPPVIWIATQVVEASLDLDFDALFTECSPIDSLLQRFGR 531 >UniRef50_B1C2J7 Putative uncharacterized protein n=1 Tax=Clostridium spiroforme DSM 1552 RepID=B1C2J7_9FIRM Length = 720 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 119/439 (27%), Positives = 191/439 (43%), Gaps = 83/439 (18%) Query: 312 IEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLI 371 I A TG+GKTE AL W L D++ F LP + +ANA+ R++ ++ N + Sbjct: 227 IVASTGAGKTEAALL--W-LNDEK----GFFTLPMKVSANAIYQRIKEHYLLPINNQNRV 279 Query: 372 -LAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVL-- 428 + HG+ L+ + + N + + VCTIDQ+ Sbjct: 280 AILHGDCY--KLYDN-------------------DLANYHNARNLAYPLTVCTIDQIFKF 318 Query: 429 -ISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLP 487 L +H + S +I+DE+ AY M + LK +GG +++ATLP Sbjct: 319 AYKALGTEHLL---ATLKYSKVIIDELQAYSPDMLATIITALKYIHKIGGKFAIITATLP 375 Query: 488 MKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICL 547 Q +LD L T ++ IN R + H + Sbjct: 376 ----QFILDE--LSTCNIKYKRFIGNIN-------NRHKITIHED--------------- 407 Query: 548 ADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLN 607 DML DL + ++ A ++ +ICN V+ AQ Y +L EL+ + +I L H+R+T Sbjct: 408 -DMLNDL---DNILDDAKT-KKILVICNTVNSAQKLYTKLLELD-SNTEIHLLHSRYTKK 461 Query: 608 DRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLH 667 R+ E+ VI F K+ + I V+TQ+VE SLD+DFD L T D L QR+GR++ Sbjct: 462 HRQILEDDVIE-FSKSNRTG---ICVSTQIVEASLDIDFDVLYTYLSSIDSLIQRMGRVY 517 Query: 668 RHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAY 727 R I V DG G + IY RT +++ + +F + Sbjct: 518 RKRENINQL---INVNIYTFKDGIGCVYDKIIYE------RTLDILKDYHN-QMFLEEEK 567 Query: 728 RQWLDSIYDDAEMDEPEWV 746 + +D +YD E+++ ++ Sbjct: 568 IKCMDRVYDRKELEKTRYM 586 >UniRef50_Q8REC9 ATP-dependent RNA helicase n=4 Tax=Fusobacterium RepID=Q8REC9_FUSNN Length = 812 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 99/388 (25%), Positives = 168/388 (43%), Gaps = 76/388 (19%) Query: 314 APTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILA 373 A TG GKTE + + + F LP + NAM R++ LF N IL Sbjct: 240 ADTGMGKTEGGFLWGG-------NNKIFFVLPLRTAINAMYKRVK-----LFVPKNKILE 287 Query: 374 ------HGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQV 427 H NS + + K I ++ ++E + ++ ++ K + L + +CT DQ+ Sbjct: 288 EKVGLLHSNS-LEYYLNNKKELVIDDKDEKE--MDILEY-NKRGKHLSLP-VTICTPDQI 342 Query: 428 LISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVL---KAQADVGGSVILLSA 484 +L K + + S +I+DE+ YD LL AV+ ++GG + +++A Sbjct: 343 FNFILKYKGYESKLATLSYSKIILDEMQMYDA---SLLAAVIFGITKIIEMGGKIAIVTA 399 Query: 485 TLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEP 544 T P P+ Y L + + L PE+ + EP Sbjct: 400 TFP----------------PI---IEYFLNKYLMKGNKKAIKDLDKPEE------VVEEP 434 Query: 545 ICLAD-------------MLPDLTMLERMI-------AAANAGAQVCLICNLVDVAQVCY 584 I + ++ D +E+++ ++ +ICN + AQ Y Sbjct: 435 IFIKKKFTNNEKIRHNIVLIDDEIGVEQILWKFRKNRKENKKSNKILVICNTIKKAQEIY 494 Query: 585 QRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDV 644 +LKE ++ + I++ H+ F DR KE ++ +FGK G I ++T +VE SLD+ Sbjct: 495 LKLKEEDDLKDKINMLHSNFIREDRENKEKEIL-DFGKTEFDGEG-IWISTSLVEASLDI 552 Query: 645 DFDWLITQHCPADLLFQRLGRLHRHHRK 672 DFD+L T+ + LFQR GR +R +K Sbjct: 553 DFDYLFTELQDLNSLFQRFGRCNRKGKK 580 >UniRef50_B0MFZ6 Putative uncharacterized protein n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0MFZ6_9FIRM Length = 755 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 95/368 (25%), Positives = 164/368 (44%), Gaps = 57/368 (15%) Query: 314 APTGSGKTETALAYAWKLIDQQIADSV-IFALPTQATANAMLTRMEASASHLFSSPNLIL 372 APTG GKTE L + I D+ F LP + N++ R++ N IL Sbjct: 223 APTGMGKTEAGLHW--------IGDNKGFFVLPVRVAINSIYDRVK----------NDIL 264 Query: 373 AHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNK-KVFLGQIGVCTIDQVLISV 431 + + + S A+ + + + S++ K+ + + T+DQ+ + Sbjct: 265 KE--EKLHERLGLLHSEALEYYREHLSNSEELDIFEYSDRGKILSLPLNISTLDQLFGFI 322 Query: 432 LPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQK 491 K ++ + + S +++DE+ YD + L L+ GG + +++ATL K Sbjct: 323 FGYKGYEMKLVTLAYSKIVIDEIQMYDAELLAYLVFGLRKIHQFGGKIAIVTATLSPFLK 382 Query: 492 QKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADML 551 D + ++ + N R + E L IQ C Sbjct: 383 -----------DILRRDTGIEFKEQQFSNNLMRHSIKVKQESLSAEDIIQ----CYKK-- 425 Query: 552 PDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRRE 611 +M+ +N ++ ++CN + AQ Y LKE + +++++FH+RFT NDR++ Sbjct: 426 ------NKMLNHSN---KILVVCNTIRKAQEMYDELKEAD-IDLNLNVFHSRFTRNDRKQ 475 Query: 612 KENRVISNFGK---NGKRNV----GRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLG 664 E+ I FGK + K+ V I +AT VVE SLD+DFD+L T+ + LFQR+G Sbjct: 476 LESE-IKEFGKTYSDEKQGVLDSRDGIWIATSVVEVSLDIDFDYLFTELSELNALFQRMG 534 Query: 665 RLHRHHRK 672 R +R +K Sbjct: 535 RCNRKGKK 542 >UniRef50_B7R551 CRISPR-associated helicase Cas3 domain protein n=1 Tax=Thermococcus sp. AM4 RepID=B7R551_9EURY Length = 868 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 122/464 (26%), Positives = 203/464 (43%), Gaps = 48/464 (10%) Query: 311 VIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNL 370 V+ APTGSGKTE + +A K +++ LP + N + R+ S + +L Sbjct: 322 VVVAPTGSGKTELGILWARK------KGKLLYTLPLRVALNDLYKRL----SEEYFDKDL 371 Query: 371 ILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLIS 430 + ++ F + S E+ A + + + +VFL + D+V IS Sbjct: 372 VGLLHSTAFMEYVEGSGSDIEVEKKVNAAGLLAMPVMLSTPDQVFLTGLNYYGADKV-IS 430 Query: 431 VLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQ 490 V P S ++VDEV AY M + L+ + GG V++++ATLP Sbjct: 431 VYP------------ESAIVVDEVQAYTPEMTAVFLKTLRLIKEAGGKVLVITATLP-PH 477 Query: 491 KQKLLDTYGLH-TDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPR--FSIQPEPICL 547 + L G D +E + + G+N + L H +L F + + Sbjct: 478 IEYFLRREGFEIVDVLEESKRH------GLN-VKNLRLKRHHVKLVEGNLFKYTNDGLKF 530 Query: 548 ADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLN 607 + L+ +E V L N V A Y+ + + N ++ L H+R Sbjct: 531 EGLEKVLSAIEEFEKQGFKSTMVVL--NNVKKAIEAYKLISKQGNGW-EVYLLHSRLPER 587 Query: 608 DRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLH 667 + E RV S+ K GK+ V LVATQVVE S+D+DFD +IT+ P D QR GR++ Sbjct: 588 KKAEVILRVKSSLEK-GKKVV---LVATQVVEASVDLDFDAMITEISPIDSQVQRWGRVY 643 Query: 668 RHHRK-YRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDA 726 R+ + Y A I + + YGR +V+ +T + I L G +L + D Sbjct: 644 RNRKTDYTGAPNIIVFSGVDRGTRAVYGRK----IGDKVLQKTAEVIGALEGRTLGYEDE 699 Query: 727 YRQWLDSIYDDAEMD-EPEWVGNGMDKFESAECEKRFKARKVLQ 769 R ++ +Y D + + VG ++K + EK+ +A++V + Sbjct: 700 -RDTIEKVYRDEILQVYRKQVGELLEKLDYFTLEKKSEAQRVFR 742 >UniRef50_Q7MTF0 CRISPR-associated helicase Cas3 n=1 Tax=Porphyromonas gingivalis RepID=Q7MTF0_PORGI Length = 778 Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 96/370 (25%), Positives = 167/370 (45%), Gaps = 52/370 (14%) Query: 309 LTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSP 368 L ++ APTG+GKT+ AL +A I + AD +I A+PT+ T NA+ + S + Sbjct: 255 LLLVRAPTGAGKTDAALLWASHQIKHRKADRLIIAMPTRFTTNAL------ALSVSSTLS 308 Query: 369 NLILAHGNSRFNHLFQSIKSRAIT-EQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQV 427 + L H ++ + I + I EQ + + ++ I VCTID + Sbjct: 309 STGLYHSSAWTQNFSSKIDNGEIALEQAR----------YYHNQARLLQTPITVCTIDHL 358 Query: 428 L--ISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSAT 485 L +++ +H+ I + + L++DE YD + + +L+ ++L+SA+ Sbjct: 359 LSSLTLCDEEHQTI-TFALANACLVIDEADFYDQFTQANILVLLEVLKYWKVPILLMSAS 417 Query: 486 LPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFS-IQPEP 544 LP Q+ +R + + L + RFS I+ Sbjct: 418 LPDNIVQE----------------------YRKIGYDIKHILEDTSDIERARFSLIEKRD 455 Query: 545 ICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARF 604 + + DL L + G+ + + N VD AQ YQ E N + ++ L+H+R+ Sbjct: 456 VSEISQMQDLLQL-----CLDRGSAI-IFANTVDRAQAYYQWFLE-NGHEEEVILYHSRY 508 Query: 605 TLNDRREKENRVISNFGKNGKRN--VGRILVATQVVEQSLDVDFDWLITQHCPADLLFQR 662 T D+ EKE +++ G++ N + + TQ+ E S+++ D +I+ CP D L QR Sbjct: 509 TETDKIEKEAQLLLRLGRSAWDNDRANGVAILTQIGEMSVNISADIMISDLCPIDRLTQR 568 Query: 663 LGRLHRHHRK 672 GRL R RK Sbjct: 569 CGRLCRFSRK 578 >UniRef50_C5UTG9 Metal dependent phosphohydrolase n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UTG9_CLOBO Length = 775 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 91/361 (25%), Positives = 164/361 (45%), Gaps = 52/361 (14%) Query: 311 VIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNL 370 +I+A TG GKTE AL + + F LP + + N++ R+ + + Sbjct: 257 IIKASTGIGKTEGALMWIGN-------NKGFFTLPLRVSINSIYDRVASKIK--YGKDRT 307 Query: 371 ILAHGNSRFNHLFQSIKSRAITEQGQ-EEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLI 429 L H NS ++ ++ E+G ++ ++ + LS + +CT+DQ++ Sbjct: 308 GLLHSNSASEYMKRN-------EKGTIDKKYLDTTKQLSLP--------LTICTLDQLIG 352 Query: 430 SVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMK 489 + + ++ + S +I+DE+ Y + M L L+ VGG +++AT P Sbjct: 353 FIFKYEGFELKLATLSYSKVIIDEIQMYSSEMIAYLIIALRDIVKVGGKFAIVTATFP-- 410 Query: 490 QKQKLLDTYGLHTDPVEN-NSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLA 548 + + + + V+N + P + N Q +L H + + + I Sbjct: 411 ---PIFEHFMNYAGIVKNVDYKIPTKAFLKKNNGQV--MLRH------KVKVWEDDID-- 457 Query: 549 DMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLND 608 + I +V +I N V AQ Y+ L++ ++ + DI +FH+R+T D Sbjct: 458 ---------AKFIYENYKNKKVLVIVNTVKAAQKLYENLEKYDDIKNDIFMFHSRYTQED 508 Query: 609 RREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHR 668 R +KE + N G+ + G I + TQVVE SLD+DFD L T+ L QR+GR++R Sbjct: 509 RAKKEITIFEN-GQLKNKFSG-IWITTQVVEASLDIDFDVLYTELSDISGLLQRMGRVYR 566 Query: 669 H 669 + Sbjct: 567 N 567 >UniRef50_Q2RHQ9 CRISPR-associated helicase Cas3 n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RHQ9_MOOTA Length = 917 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 104/370 (28%), Positives = 165/370 (44%), Gaps = 49/370 (13%) Query: 311 VIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPN- 369 V+ APTG GKTE A+ W + LP +A N + R L + Sbjct: 292 VLVAPTGFGKTE--FAFLWGAEKKNF-----ILLPMRAAVNKIWERTRDMVESLGEKGDD 344 Query: 370 -LILAHGNSRFNHLFQSIKSRAITEQG--QEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQ 426 + L H ++ + +QG + E+ + L++ + ++ + T DQ Sbjct: 345 QVALLHSDAALETFSR------YQQQGDLESESNTRKAMELARHLARTYI----IATADQ 394 Query: 427 VLISVL--PVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSA 484 V + L P R L G L++DEV AYD ++ +++ A +GG+ ++++A Sbjct: 395 VAPAALRYPGYERIFAALMNG--ALVIDEVQAYDPRAAAIITHLVQQNAYLGGNNLIMTA 452 Query: 485 TLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEP 544 TLP ++L+ GL V P + GV + R L F++ Sbjct: 453 TLPPFISRELVKRLGLADHQVIRLIDEP--EFEGVAASCRHRL---------GFNVHA-- 499 Query: 545 ICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKE-LNNTQVDID--LFH 601 D +T + I AA G +V ++ N V A Y ++ L Q+ I+ L H Sbjct: 500 ---GDYASAVTAI---IRAAQQGKKVLVVMNTVRAACEIYDKIMAVLQQEQLAIETLLLH 553 Query: 602 ARFTLNDRREKENRVISNFGKNG-KRNVGR-ILVATQVVEQSLDVDFDWLITQHCPADLL 659 +RF L + E E V+ + N R+ G I+VATQ+VE SLD+D D L T+ PAD L Sbjct: 554 SRFILKQKEELEKAVVEKYMPNRPDRDAGPCIVVATQIVEASLDIDADVLFTEPSPADSL 613 Query: 660 FQRLGRLHRH 669 QR+GR+ R Sbjct: 614 IQRMGRVFRR 623 >UniRef50_Q8F1E6 ATP-dependent RNA helicase, putative n=2 Tax=Leptospira interrogans RepID=Q8F1E6_LEPIN Length = 752 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 97/402 (24%), Positives = 166/402 (41%), Gaps = 57/402 (14%) Query: 270 LSGLVSNKRCYEGV-HALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYA 328 L+ ++S + C + V L + +P Q QV V T++ A G+GKT A +A Sbjct: 250 LNRVLSEQECSKIVKQGLGEKNLRPFQKQVGDSTSRV----TLVRAGCGNGKTIAAFQWA 305 Query: 329 WKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKS 388 + F PT TA E ++ P L +SR + + S Sbjct: 306 ---KTHSAGRKLFFCYPTMGTAT------EGFRDYVSDIPGLDALLSHSRASLDLGELAS 356 Query: 389 RAITEQGQEEAWVQCCQWLSQSNKKV--FLGQIGVCTIDQVLISVLPVKHRFIRGLGIGR 446 ++G L+ ++ + + Q+ CT+DQ+L + + I Sbjct: 357 TGEEDEGDS---------LNMHSRMLQEWTAQVTFCTVDQILGLLQNYRSSLTLSPAIFL 407 Query: 447 SVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVE 506 + DE+H YD+ + G L LK + S++L++A+LP + +T G PV Sbjct: 408 GAFVFDEIHMYDSILFGNLLTFLKEFSHT--SILLMTASLPETMLSAIQETVGADLGPVI 465 Query: 507 NNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANA 566 + A + R+ +L + L++ I Sbjct: 466 SGEAQ-------IEERLRYRILHSSRE---------------------DALQKAIQEFKN 497 Query: 567 GAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKR 626 G +V +CN V+ Y L E ++ ++H+RF DR+E+ VI +F + K+ Sbjct: 498 GGRVLWVCNKVEHCLKLYDELSE--KYDIEALVYHSRFKYEDRKERHRAVIDSFQEGYKK 555 Query: 627 NVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHR 668 ++ + TQV E SLD+ LI++ CP L QRLGR++R Sbjct: 556 SLPVFAITTQVCEVSLDISATLLISELCPFAALIQRLGRVNR 597 >UniRef50_B2V8N4 CRISPR-associated helicase Cas3 n=2 Tax=Sulfurihydrogenibium RepID=B2V8N4_SULSY Length = 729 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 127/521 (24%), Positives = 214/521 (41%), Gaps = 92/521 (17%) Query: 155 AVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIP 214 AV HH + D +KS+ L +A + + ++WI LE L + I + Sbjct: 105 AVAYHHD--RYDTDINKSK----PILEDFAVRVENDLKDWI--LEKLKI----YEITQLN 152 Query: 215 PDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLEL-SGL 273 D S L+ G S ++ FL ++ L+ AS +E+ GL Sbjct: 153 IDKSKLIDGLRSALEFKKQILRNENFLKDKKTI----LLKGLLHRLDHAASADVEVEKGL 208 Query: 274 VSNKRCYEGVHALLDNGYQPRQLQVLVD----ALPVAPGLTVIEAPTGSGKTETALAYAW 329 + E ++ G + + L D AL ++ A TG GKTE AL + Sbjct: 209 I------EDYQSIFIKGLSKKGINKLKDFQKKALDYKDKSVILTASTGMGKTEFALNWVA 262 Query: 330 KLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHL--FQSIK 387 D + LP + + N+M R+ S++F N+ + H N+ +L F++++ Sbjct: 263 -------GDKAFYTLPVRVSVNSMYERI----SNIFGKDNVGILHANTTDFYLNQFKNLE 311 Query: 388 SRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRS 447 I E + Q + Q + I V T DQ+ ++ L + S Sbjct: 312 DNGI------EVLINQVQSVRQLS-----MPITVSTADQIFLATLKYSGFEKIYATLTYS 360 Query: 448 VLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVEN 507 +IVDE Y ++ L+ ++GG L++AT+ Sbjct: 361 KVIVDEPQGYSPDTLAVILKGLEEIYNLGGKFCLMTATM--------------------- 399 Query: 508 NSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAG 567 +P I + A+ + + +PE+ I L D D M++ I G Sbjct: 400 ---HPFIKEYLKDKAEILEPVFNPEK--------KHKIKLVDKTVD-EMVDFAIKEYQKG 447 Query: 568 AQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRN 627 +V ++ N V AQ Y+ L+ L + L H+ + +REKE ++ +N Sbjct: 448 KKVLILTNTVRKAQEVYKALENLKQP-IQFHLLHSLYIQKTKREKEMQI-----QNTTEP 501 Query: 628 VGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHR 668 V I ++TQ+VE SLD+D+D LIT+ AD L QR+GR++R Sbjct: 502 V--IWISTQIVEASLDIDYDLLITELSTADSLIQRMGRVYR 540 >UniRef50_UPI0001699052 Helicase n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001699052 Length = 264 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 56/110 (50%), Positives = 71/110 (64%), Gaps = 5/110 (4%) Query: 573 ICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNV--GR 630 I N V A+ +Q+LK ++ + I+LFHARF L+DR E +V++ FG N GR Sbjct: 1 IRNSVADAREAWQQLK-ADHPEWQIELFHARFALDDRLNIEQQVVARFGPNSDEEARRGR 59 Query: 631 ILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEI 680 +L+ATQVVEQSLD+DFD LI+ P DLL QR GRLHRH R P G I Sbjct: 60 LLIATQVVEQSLDLDFDRLISDLAPIDLLIQRAGRLHRHSRD--PQGNRI 107 >UniRef50_A3XI96 Putative uncharacterized protein n=1 Tax=Leeuwenhoekiella blandensis MED217 RepID=A3XI96_9FLAO Length = 327 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 67/199 (33%), Positives = 103/199 (51%), Gaps = 20/199 (10%) Query: 557 LERMIAAANAGAQVCLICNLVDVAQVCYQRLKEL-NNTQVDIDLFHARFTLNDR--REKE 613 LE + G +V ++ N VD A Y++LK+L ++ VD +H+RF DR +EKE Sbjct: 47 LEEITFKIEEGKKVLIVVNTVDRAIELYEKLKDLAEDSGVDAICYHSRFIKKDRFLKEKE 106 Query: 614 NRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKY 673 + N +N G +L+ATQVVE SLD+DFD L T++ P D + QR GR++R +K Sbjct: 107 IFALDN------KNEGGVLIATQVVEVSLDIDFDILYTENAPIDAIIQRAGRVNRKRQKE 160 Query: 674 RPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDS 733 IL + Y E IY V+ T +H +ELNG L + +D Sbjct: 161 NS-------KVILF---QHYEISEKIYDVKGVLENTFRHFKELNGRRL-TEKKLNELVDV 209 Query: 734 IYDDAEMDEPEWVGNGMDK 752 +Y D +++ + G++K Sbjct: 210 VYKDLDIESNDKYLEGLNK 228 >UniRef50_UPI0001BC6554 ATP-dependent RNA helicase n=3 Tax=Fusobacterium RepID=UPI0001BC6554 Length = 733 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 93/360 (25%), Positives = 162/360 (45%), Gaps = 46/360 (12%) Query: 314 APTGSGKTETALAYAWKLIDQQIADS-VIFALPTQATANAMLTRMEASASHLFSSPNLIL 372 A TG GKTE AL + I +S F LP + NA+ R+ + + NL Sbjct: 208 ADTGMGKTEAALRW--------IGNSKAFFTLPIRTAINAIYDRV---SRDILERENL-- 254 Query: 373 AHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVL 432 R + L + +EE + ++ Q K + L + +CT DQ+ +L Sbjct: 255 ---EERLSLLHSTSLEYYAKNIAEEE--LDIFEY-HQRGKHLSLP-LTICTADQIFNFIL 307 Query: 433 PVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQ 492 K ++ + S +++DE+ YD + + +K ++GG + +++AT P + Sbjct: 308 KYKGYEMKLATLSYSKVVLDEIQMYDPSLLAAIILGIKTILELGGKIGIVTATFPPIVE- 366 Query: 493 KLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLP 552 L + + S I + N R +L+++ +++ + + Sbjct: 367 ------ALMKKEIPDFSFQKQI-FHSKNNVIRHNLISYDKRMG------------TEEMI 407 Query: 553 DLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREK 612 DL + + I +N ++ ++CN + AQ Y L E + L H+RF DR K Sbjct: 408 DLFLRNKKIGKSN---KILVVCNTIKDAQAMYDTLLEQEELSPYLHLLHSRFIKEDRARK 464 Query: 613 ENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRK 672 E +++ FGK + G I ++TQ+VE SLD+DFD+L T+ LFQR GR +R +K Sbjct: 465 EKEILA-FGKTEIKENG-IWISTQLVEASLDIDFDYLFTELQDLSSLFQRFGRCNRKGKK 522 >UniRef50_B3QT88 Metal dependent phosphohydrolase n=3 Tax=Bacteria RepID=B3QT88_CHLT3 Length = 723 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 146/642 (22%), Positives = 234/642 (36%), Gaps = 170/642 (26%) Query: 73 LHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSL 132 LHDIGK FQ + + P TP F H A + Sbjct: 50 LHDIGKTSTIFQERLT---INKKPDTP------------FRHEIASCF------------ 82 Query: 133 GDFFSFFDAAPHPYESWFPWVEAVTGHH----------GFILHSQDQDKS------RWEM 176 F S FD HP +E + HH G + ++D+D + WE+ Sbjct: 83 --FLSLFDKEIHP-----ALIEMIIAHHKSIENDAKRKGILDLNEDRDNTFLLHSKNWEL 135 Query: 177 PASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLA-------D 229 S A + +L A +T +SI + +++A +C A + Sbjct: 136 WKSDA-------------LQLLSAFGITVRDISIEEAQASYDAVVA-YCEDAVRESGYSE 181 Query: 230 WLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDN 289 W G + F +D +R + Q + R EL L E H Sbjct: 182 WRGLLMAADHFASALSGKTDDYLVRLFKQPKLDFYQRRHELYPLSLKNASSEKKH----- 236 Query: 290 GYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQAT 349 T++ A TG+GKT+ + ++ V + LP QA+ Sbjct: 237 --------------------TMVVASTGAGKTD--------FLFRRCKGRVFYTLPFQAS 268 Query: 350 ANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQ 409 NAM R++ + ++ L H S+ A+ + +EE +Q Sbjct: 269 INAMYKRVKKDLATDNPDMDIRLLHAASKI----------ALDGKSKEEKIIQ------- 311 Query: 410 SNKKVFLGQIG----VCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLL 465 G +G V T Q+ + I +I+DE+H Y ++ Sbjct: 312 -------GHVGAAVKVLTPHQIAAIAFGTNGYEAMIMDIKGCDVILDEIHTYTEVTRAIV 364 Query: 466 EAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRF 525 +++ +G ++ + +AT+P +++D G T I Q Sbjct: 365 LKIIQVLKHLGCNIHIGTATMPTLLYNRIIDLLGKET--------VSEIRLEDDELEQFN 416 Query: 526 DLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQ 585 + H ++ R S E + A N +V ++CN V AQ Y Sbjct: 417 RHIIH--KIDNRESAA----------------EIITQAINEQKKVLVVCNRVKAAQDEYS 458 Query: 586 RLKELNNTQVDIDLFHARFTLNDRREKENRVI---SNFGKNGKRNVGR---ILVATQVVE 639 +L+E+ + I L H+RFT DR EKE ++ + NG N I+V+TQVVE Sbjct: 459 KLQEMF-PETPILLIHSRFTKGDRDEKERLLLGLDDDGNPNGNFNTSNKACIVVSTQVVE 517 Query: 640 QSLDVDFDWLITQHCPADLLFQRLGRLHRHHRK-----YRPA 676 SLD+ FD ++T P D L QR GR++R K Y+P Sbjct: 518 VSLDISFDVMVTDAAPLDALIQRFGRVNRIRTKETIGTYKPV 559 >UniRef50_D0GJL0 Metal dependent phosphohydrolase n=1 Tax=Leptotrichia goodfellowii F0264 RepID=D0GJL0_9FUSO Length = 810 Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 119/547 (21%), Positives = 226/547 (41%), Gaps = 89/547 (16%) Query: 310 TVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEAS------ASH 363 ++ A TG GKTE L + + F LP + N++ R++ Sbjct: 264 VIVVAQTGFGKTEAGLLWIGN-------NKGFFTLPLRVAINSIYKRIKEQILKDDITKD 316 Query: 364 LFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCT 423 F+ L L H + R +L + + + + + + +++ ++ K++ L + VCT Sbjct: 317 EFTDK-LGLLHSDFRSEYLKRFEEKKDKEIEENDFTEDRLDEYIGKT-KQLSLP-LTVCT 373 Query: 424 IDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLS 483 IDQ+ V ++ + S +++DE+ Y + L +K D+GG +++ Sbjct: 374 IDQIFDFVYRAPGFEMKASILAYSKIVIDEIQMYSPNLVASLIYGIKFITDLGGKFAIMT 433 Query: 484 ATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPE 543 ATLP G+ +E + + VN R + ++ F Sbjct: 434 ATLP-----------GIIKTLLEKENVSFVTTSPFVNNKIRHKVKIENNEINAEF----- 477 Query: 544 PICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHAR 603 I ++ ++CN V ++ Y LKE+ + +I+L H++ Sbjct: 478 -----------------IKGKYKNNKILVVCNTVKKSKEIYDTLKEIGVLEEEINLLHSK 520 Query: 604 FTLNDRREKENRVISNF-------GKNGKRNVGR------ILVATQVVEQSLDVDFDWLI 650 F DR EKEN I+ F G+ KR + I + TQVVE SLD+DFD LI Sbjct: 521 FIKKDRSEKENE-ITKFASPKRFSGEEKKRRKEQNIIEHGIWIGTQVVEASLDIDFDVLI 579 Query: 651 TQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQ 710 T+ + LFQR+GR +R G+ V T + G + E + + +++ Sbjct: 580 TELSDLNGLFQRMGRCYRSRTLKSEDGYNCFVFT---DNCSGISKSERSIIDKDIHEKSR 636 Query: 711 QHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQW 770 + + LN + + +D +Y + E ++ E++ +A K + Sbjct: 637 ERL--LNIDGILTEEMKLSMIDEVYSYESLKETQYCQT---------IEEKLRALKF--Y 683 Query: 771 AEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQV------YEDLSHEQQYE 824 EY + + E + + RD S+ ++P K+++ + Y+D S+ ++ E Sbjct: 684 IVEYEM--SKEKVKEIFRDIH-SIDVIPKSVYEENKEMITENIKILKKTYKDCSNIER-E 739 Query: 825 ALALNRV 831 L L+++ Sbjct: 740 TLKLDKI 746 >UniRef50_C9XQV8 Crispr-associated helicase cas3 n=2 Tax=Clostridium difficile RepID=C9XQV8_CLODC Length = 661 Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 113/436 (25%), Positives = 192/436 (44%), Gaps = 81/436 (18%) Query: 311 VIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNL 370 +I A TG GKT T+L ++ + ++ + V + LP A+ N++ + + N+ Sbjct: 204 MIMAMTGLGKTATSLYWSNLVQNEYKSKRVYYILPYTASINSLYENL--------YNRNI 255 Query: 371 ILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLIS 430 ++ +S+ + I EE Q Q +S K QI VCTI Q++ S Sbjct: 256 SVSMLHSKAPYFLNKI--------SDEEDIKQLYQIYKKSVK-----QINVCTIFQLVKS 302 Query: 431 VLPVKHRFIRGLG-IGRSVLIVDEVHAYDT-YMNGLLEAVLKAQADVGGSVILLSATLPM 488 V K RF L + S+ IVDE+H +DT + LE + + ++ + ++SA++P Sbjct: 303 VFSCK-RFEMLLSQLKDSIFIVDEIHCFDTRVLCYTLEFLKYLKENLNVKICIMSASIPT 361 Query: 489 KQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLA 548 K+ + + + T +E +S DL+ R + E I Sbjct: 362 CLKKLIQERLQIST-IIEPDSK---------------DLI-----FRHRLNRLSEGI--- 397 Query: 549 DMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLND 608 L + ++ G +V + N VD++Q Y RL++ N L H RF D Sbjct: 398 -----LDSIHKIENDLMQGKRVLICVNSVDLSQELYGRLQKYNPK-----LIHGRFNTRD 447 Query: 609 RREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHR 668 R + E + +F +L+ TQ +E SLD+ +D L T+ P D L QR GR++R Sbjct: 448 REQAEKGIEESF----------LLIGTQSIEVSLDISYDVLYTELAPLDSLLQRFGRVNR 497 Query: 669 HHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEEL--NGASLFFPDA 726 G ++ I + D Y R +IY ++ RT I ++ N S+ Sbjct: 498 R-------GDNAELSNIYIYD---YDRKLNIYDE-DIINRTDIVISDIIHNDNSIVDESK 546 Query: 727 YRQWLDSIYDDAEMDE 742 +LD++Y D +MD+ Sbjct: 547 VPSYLDNVYLDIDMDK 562 >UniRef50_B7GIV6 CRISPR-associated protein Cas3 n=3 Tax=Bacillaceae RepID=B7GIV6_ANOFW Length = 726 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 97/357 (27%), Positives = 154/357 (43%), Gaps = 64/357 (17%) Query: 314 APTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILA 373 A TG GKTE AL + D F LP + + NA+ R++ + + L Sbjct: 240 AQTGMGKTEAALLWIQ-------HDKAFFTLPLRVSINAIYDRIKEKMGY----DAVGLL 288 Query: 374 HGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLP 433 H S ++L +EE W + Q KK+ L TIDQ+L P Sbjct: 289 HSTS-VHYLV-----------DKEENWEELKQQSEHYAKKLLL-----TTIDQIL--KFP 329 Query: 434 VKHR-FIRGL-GIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQK 491 ++ F + L + + +++DE+ AY+ + +L L+ VGG ++++ATLP Sbjct: 330 FYYKGFEKELSAMANAKVVIDEIQAYEPRIAAMLIKSLEMIHRVGGKFMIMTATLP---- 385 Query: 492 QKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADML 551 T +E +IN + + D + ++ R E I Sbjct: 386 ----------TLYLEELKQRNVINDDQIAIEEFIDTSVNRHRIRLRSEGIEEAIG----- 430 Query: 552 PDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRRE 611 + +QV +I N V A Y + + + TQV I L H++FT DR+ Sbjct: 431 --------EVLELGETSQVLVIVNTVRQAMSLYDKFLDCD-TQVPIYLLHSQFTQEDRQL 481 Query: 612 KENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHR 668 E I F ++ +R I + TQ+VE S+D+DFD+L T+ D LFQR GR +R Sbjct: 482 LEKH-IKQFNEDNERG---IWITTQLVEASIDIDFDYLFTEMSTLDSLFQRFGRCYR 534 >UniRef50_C6A4J6 Putative uncharacterized protein n=1 Tax=Thermococcus sibiricus MM 739 RepID=C6A4J6_THESM Length = 733 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 92/364 (25%), Positives = 153/364 (42%), Gaps = 62/364 (17%) Query: 311 VIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNL 370 + APTG GKT +L A + +I+ LPT + M ++ Sbjct: 233 LFSAPTGWGKTFASLTIA----STKTPTHIIYVLPTITSIRKMKETIKK----------- 277 Query: 371 ILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLIS 430 + N+ F ++ + +Q E V ++S+S F+ + + T+DQ++++ Sbjct: 278 -ILKMKVEDNYYFADVEK--VAKQKDYERSVDWELFISRS----FMSPVTLTTLDQIVLT 330 Query: 431 VLPVKHRFIRGLGIGRSVLIVDEVHAYD-TYMNGLLEAVLK--AQADVGGSVILLSATLP 487 L V F++ S+ I DE H Y + + LL+ + K + D + +SAT+ Sbjct: 331 FLHVGKYFLKRFHFRNSIFIFDEFHLYPISGLYILLKFIQKYNQEFDYNIKTVFMSATV- 389 Query: 488 MKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICL 547 P N I+ + + + + +SI E I Sbjct: 390 ---------------HPALENLVSSYISPISFDFTEEYK-----RKRRYMYSINEEDIVS 429 Query: 548 ADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLN 607 +L + IA V +ICN V+ A Y LK + + L H+RFT Sbjct: 430 PAILEE-------IAKKAQDGNVLVICNTVEKAIKLYLLLKRHYKIKKTL-LLHSRFTYK 481 Query: 608 DRREKENRV--ISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGR 665 DR+EKE ++ +S K G + V+TQV E SLD+ FD+L T+ P L QR GR Sbjct: 482 DRKEKETQLEWLSRIPK------GFVFVSTQVAEVSLDMSFDYLFTELAPLSSLIQRFGR 535 Query: 666 LHRH 669 ++R+ Sbjct: 536 VNRY 539 >UniRef50_Q184G8 Putative uncharacterized protein n=7 Tax=Clostridium difficile RepID=Q184G8_CLOD6 Length = 773 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 100/382 (26%), Positives = 167/382 (43%), Gaps = 69/382 (18%) Query: 311 VIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNL 370 ++ APTG GKTETAL W ID+ D F LP + + NA+ R + N+ Sbjct: 250 ILIAPTGMGKTETALI--W--IDK---DKAFFTLPLRVSINALFDR----------AKNI 292 Query: 371 I-LAHGNSRFNHLFQSIKSRAITEQGQEEA--WVQCCQWLSQSNKKVFLGQIGVCTIDQV 427 + + N F L S + E QE + V + LS ++ TIDQ+ Sbjct: 293 VGVGESNDTFLGLLHSTAIDYLEESNQENSSEIVDLAKLLS--------CKLTFSTIDQI 344 Query: 428 LISVLPVKHRFIRGL--GIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSAT 485 P +R + + S +++DE+ AY + +L ++ +GG ++++AT Sbjct: 345 F--KFPFLYRGYEKVYSTLAYSKVVIDEIQAYSPEIAAVLVKGIEMIHKIGGRFMIMTAT 402 Query: 486 LPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPI 545 +P ++ D ++ RGV + +L + E++ SI I Sbjct: 403 MPT-----------IYIDELKK---------RGVMNSNLAELTCNTEKIRHCVSIVENSI 442 Query: 546 CLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKEL---NNTQVDIDLFHA 602 L ++I + +V +I N V A Y+ ++E+ V+++L H+ Sbjct: 443 D--------ENLGKIIQSG-MNKKVLVIVNTVKSAVEKYELIEEIVKPKGIDVNLNLLHS 493 Query: 603 RFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQR 662 + DR + E + I F + I + TQ+VE SLD+DFD L T++ D LFQR Sbjct: 494 MYIQEDRAKLE-KYIKEFADSDSNG---IWITTQLVEASLDIDFDELHTENSTLDSLFQR 549 Query: 663 LGRLHRHHRKYRPAGFEIPVAT 684 GR +R R+Y I + T Sbjct: 550 FGRCYR-SREYEENSPNIFIYT 570 >UniRef50_A6TQ84 Metal dependent phosphohydrolase n=2 Tax=Firmicutes RepID=A6TQ84_ALKMQ Length = 743 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 97/356 (27%), Positives = 157/356 (44%), Gaps = 58/356 (16%) Query: 314 APTGSGKTETALAYAWKLIDQQIADSV-IFALPTQATANAMLTRMEASASHLFSSPNLIL 372 A TG GKTE L + I D+ F LP + NAM R+ + L Sbjct: 234 AETGMGKTEAGLLW--------IGDNKGFFTLPLKTAINAMYDRIALDMIKEGYENKIGL 285 Query: 373 AHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVL 432 H ++ +L + ++ I E + + LS + +CT+DQ+ V Sbjct: 286 LHSDTYSEYLNRDGEAIDIDE------YYNKTKQLSLP--------LTICTLDQIFDFVY 331 Query: 433 PVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQ 492 + + + + +++DEV Y + L L +GG +L+ATLP Sbjct: 332 RYRGFESKLATLAYAKVVIDEVQMYSADLLAYLIIGLSYITKIGGKFAILTATLP----D 387 Query: 493 KLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLP 552 +LD L + + ++ + QR R S++ L + L Sbjct: 388 LVLDL--LQEEEI------TFVSPKTFTNNQRI-----------RHSVK----VLNEQLN 424 Query: 553 DLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREK 612 T+L+ + N +V +ICN V AQ Y+ LK+ + +++LFH+ F DR+EK Sbjct: 425 HNTVLD--LYNEN---KVLVICNTVKEAQRMYKLLKDSKKIR-NLNLFHSNFIKKDRKEK 478 Query: 613 ENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHR 668 E +++ G + G + V TQVVE SLD+DFD LIT+ + LFQR+GR +R Sbjct: 479 EKQILE-IGHRESKQYG-VWVTTQVVEASLDIDFDILITELSDLNGLFQRMGRCYR 532 >UniRef50_C7N973 CRISPR-associated helicase Cas3 n=2 Tax=Bacteria RepID=C7N973_LEPBD Length = 804 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 97/378 (25%), Positives = 161/378 (42%), Gaps = 66/378 (17%) Query: 310 TVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPN 369 V+ A TG GKTE L + + F LP + N++ R++ Sbjct: 266 VVVVAQTGYGKTEAGLLWIGN-------NKGFFTLPLRVAINSIFNRVKNQIVIEKLENR 318 Query: 370 LILAHGNSRFNHLFQSIKSRAITEQGQEE----AWVQCCQWLSQSNKKVFLGQIGVCTID 425 + L H + R ++ + K + + ++ + LS + VCTID Sbjct: 319 IGLLHSDFREIYIEDTKKKEKNNLEKMDNDDLFMYIDKTKQLSLP--------LTVCTID 370 Query: 426 QVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSAT 485 Q+ V ++ + S +++DE+ Y T + L LK D GG +++AT Sbjct: 371 QLFDFVFRAPGFELKVATLSYSKVVIDEIQMYSTDLLAYLIYGLKYITDFGGKFAIMTAT 430 Query: 486 LPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPI 545 LP ++D L + +E + P IN + R +I+ Sbjct: 431 LP----GIIIDL--LKKEEIEFVTTEPFINDK------------------KRHNIK---- 462 Query: 546 CLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFT 605 +L D T+ I ++ ++CN V ++ Y+ LK L +++L H+RF Sbjct: 463 ----VLKD-TINAEFIKENYKDNKILVVCNTVKKSKQMYENLKNLGIECKELNLLHSRFI 517 Query: 606 LNDRREKENRVISNFG--KNGKRNVGR-----------ILVATQVVEQSLDVDFDWLITQ 652 DR +KE + IS F K K++V + I + TQVVE SLD+DFD LIT+ Sbjct: 518 KKDRAKKE-KEISEFANPKRFKQSVKKERKSKNIFENGIWIGTQVVEASLDLDFDILITE 576 Query: 653 HCPADLLFQRLGRLHRHH 670 + LFQR+GR +R+ Sbjct: 577 LSDLNGLFQRMGRCYRNR 594 >UniRef50_A8L914 CRISPR-associated helicase Cas3 n=5 Tax=Actinomycetales RepID=A8L914_FRASN Length = 811 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 105/454 (23%), Positives = 179/454 (39%), Gaps = 71/454 (15%) Query: 311 VIEAPTGSGKTETALAYAWKLIDQQIADS-VIFALPTQATANAMLTRM------------ 357 ++ APTGSGKTE LA+A ++ + +++ LP +A+ +A R Sbjct: 256 ILVAPTGSGKTEAGLAWASAQLENMPGEPRLVWVLPYRASIDAAADRFTRDLDPPSDPCP 315 Query: 358 ------EASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSN 411 E ++ + SP++ + H + ++ +RA+ + Sbjct: 316 EPGESSEYPSTVVARSPDIGVLHATA-----AATLLTRAVADDCPPSPASARKARARAQA 370 Query: 412 KKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKA 471 ++F ++ V T Q+L + + L ++ ++DE+HAYD G + A L Sbjct: 371 MRLFAQRVRVATPHQLLRAAIAGPRYSSVLLEQANALFVLDELHAYDPETFGRICAALGM 430 Query: 472 QADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHP 531 +G + +LSATL + D+ G H D L+ R Sbjct: 431 WDHLGSRIAVLSATLAKPMIDLVEDSLGGHVD---------LVRAPAGTAPDRH------ 475 Query: 532 EQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELN 591 R + +PI D +L + R + G V ++ N V VAQ +Q L Sbjct: 476 -----RLVLDEQPITAPD---NLRAISRWM---TEGHSVLVVANTVRVAQQLFQALAPAA 524 Query: 592 NTQVDID-----LFHARFTLNDRREKENRVISNFGKNGKRNV----GRILVATQVVEQSL 642 D L H+RF DR E+R+ + + + G ++V+TQV+E SL Sbjct: 525 REAWPDDPDAAILLHSRFKGRDRARIEHRITTRHPERSAGDPALRQGGLVVSTQVLEVSL 584 Query: 643 DVDFDWLITQHCPADLLFQRLGRLHRHHRKYR-PAGFEIPVATILLPDGEGYGRHEHIYS 701 +DFD +++ P + + QR GR++R R P F + LP E Sbjct: 585 CLDFDRGVSELAPIEAVAQRAGRVNRRGRHPDGPVEFRVHRTDSALPYQE---------E 635 Query: 702 NVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIY 735 ++ W +H GA WLD +Y Sbjct: 636 SLDAAWAAMRHTA--AGAQAISEQTVEDWLDHVY 667 >UniRef50_O27158 Conserved protein n=1 Tax=Methanothermobacter thermautotrophicus str. Delta H RepID=O27158_METTH Length = 830 Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 93/368 (25%), Positives = 160/368 (43%), Gaps = 49/368 (13%) Query: 306 APGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLF 365 P V+ APTGSGKTE ++ +A K I+ LP + N + R+ S + F Sbjct: 291 GPKKMVLVAPTGSGKTEFSILWAAKH-----GRKFIYTLPLRVALNDIFMRLRDSDGY-F 344 Query: 366 SSPNLILAHGNSRFNHLFQSIKSRAIT-EQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTI 424 S + + H + +L + R + A + L + +V + + Sbjct: 345 SEDEIDILHSTAFIEYLKEERLGRGTDLDSMMTSARLMASPALLTTPDQVLITSLNYFGS 404 Query: 425 DQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSA 484 D+V ISV P + +I+DE+ Y+ M ++ L+ +V G++++++A Sbjct: 405 DKV-ISVYPF------------ASMILDEIQTYNEEMAAVIIKTLELVNEVDGNILVMTA 451 Query: 485 TLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQL--PPRFSIQP 542 TLP + LD V + +A P G + + +L H QL P F+ + Sbjct: 452 TLP-PYFRSFLDAMNFE---VMDVAAIP-----GAHDIKNLNLKRHVPQLIEEPLFNDEL 502 Query: 543 EPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHA 602 E ++D L I N+ V ++ N V A Y+ ++ D+ L H+ Sbjct: 503 E---VSDKLGK-------ILDENSEKNVLIVVNNVQKAIELYREYQD----DPDVYLLHS 548 Query: 603 RFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQR 662 R + K R I K + G +++TQ++E S+D+DFD +IT+ D QR Sbjct: 549 RLL---EKVKSQR-IGEVKKRSQDERGLTVISTQIIEASVDIDFDLMITEISTIDSQIQR 604 Query: 663 LGRLHRHH 670 GR+HR+ Sbjct: 605 WGRIHRNR 612 >UniRef50_A4X3M6 CRISPR-associated helicase, Cas3 family n=1 Tax=Salinispora tropica CNB-440 RepID=A4X3M6_SALTO Length = 801 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 98/382 (25%), Positives = 163/382 (42%), Gaps = 54/382 (14%) Query: 308 GLTVIEAPTGSGKTETALAYAWKLIDQQIADS-VIFALPTQATANAMLTRM--EASASHL 364 G ++ APTGSGKTE+ L +A + + V++ LP +A+ +A + R + + Sbjct: 273 GHMILIAPTGSGKTESGLGWAARQLPTMSGQPRVVWVLPYRASIDAAVNRFRQDLPPAGA 332 Query: 365 FSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNK-KVFLGQIGVCT 423 + ++ + HG + + L +++ V Q S++ ++F + V + Sbjct: 333 DAEADIGVLHGTAALSVLADAVRDDCGPTA------VDARQASSRAGAMRLFAQRFRVAS 386 Query: 424 IDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLS 483 Q+L+ + L S++++DE+HAYD G L A ++ ++G V ++S Sbjct: 387 AYQLLVGAIAGPRYASVLLEQANSLMVLDELHAYDPQTFGRLCACMRLWEELGTRVAVVS 446 Query: 484 ATL--PMKQ--KQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFS 539 ATL PM ++ L LH P + P R L+ + L S Sbjct: 447 ATLAPPMITLIRETLRSPVALHRAP---DGTAP----------DRHRLVLDEQPLTAPAS 493 Query: 540 IQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDID- 598 ++ LAD G V L+ N VD AQ Y L D Sbjct: 494 LEVVRSWLAD-----------------GYSVLLVANTVDTAQALYTELAPTARAVADEAG 536 Query: 599 ------LFHARFTLNDRREKENRVISNFGKNGKRNVGR---ILVATQVVEQSLDVDFDWL 649 L H+RF DR E R+++ G+ R ++VATQ VE SL +DFD Sbjct: 537 RDTAALLLHSRFRARDRAVIERRLLARHGERQPGQPARRGGLVVATQAVEVSLRLDFDRG 596 Query: 650 ITQHCPADLLFQRLGRLHRHHR 671 ++ P + + QR GR++R R Sbjct: 597 ASELAPIEAVAQRAGRVNRLGR 618 >UniRef50_D1A6P6 Metal dependent phosphohydrolase n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1A6P6_THECD Length = 1027 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 111/409 (27%), Positives = 176/409 (43%), Gaps = 68/409 (16%) Query: 308 GLTVIEAPTGSGKTETALAYAWKLIDQQIA-DSVIFALPTQATANAMLTRMEAS--ASHL 364 G V+ APTGSGKTE LA+A + +D +++ LP +A+ +A R S + Sbjct: 496 GHLVLCAPTGSGKTEAGLAWASRQLDDMPGRPRLLWVLPYRASIDAARDRFIKSLLPAPG 555 Query: 365 FSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNK--------KVFL 416 P++ + H + +++ +RA T+ C Q+ K ++F Sbjct: 556 QKKPDIGVLHATA-----ARTLLARATTDD--------CPPGPRQARKARDQAAAMRLFA 602 Query: 417 GQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVG 476 +I V T Q+L + L +++ +DE+HAYD G L A ++ +G Sbjct: 603 QRIRVATPYQLLRGAIAGPSHSSVLLEQANALIALDELHAYDPATFGRLCAAMRLWQMLG 662 Query: 477 GSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPP 536 V++LSATL L DT D V + A P P++ Sbjct: 663 SRVVVLSATLAPPMIDLLKDTL----DQVTVHRAPPGTA---------------PDRH-- 701 Query: 537 RFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVD 596 R + +PI L +R+ G V ++ N V AQ Y+ L + Sbjct: 702 RLVLDDQPITAPQSL------DRIRRWLTEGHSVLVVANTVATAQRLYRELAGHARAVLP 755 Query: 597 ID-----LFHARFTLNDRREKENRVISN-----FGKNGKRNVGRILVATQVVEQSLDVDF 646 D L H+RF DR E R+ + G+N +R G ++VATQV+E SL +DF Sbjct: 756 DDPDAAILLHSRFRAEDRAAIERRISTRHPERAVGENTRR--GGLVVATQVLEVSLCLDF 813 Query: 647 DWLITQHCPADLLFQRLGRLHRHHRKYRPAG---FEIPVATILLPDGEG 692 D +++ P + + QR GR++R R P G F + + LP EG Sbjct: 814 DRGVSELAPIEAVAQRAGRVNRRGRH--PDGVVEFRVHMPESALPYEEG 860 >UniRef50_UPI0001A42E8B hypothetical protein PcarcW_20928 n=1 Tax=Pectobacterium carotovorum subsp. carotovorum WPP14 RepID=UPI0001A42E8B Length = 312 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/163 (35%), Positives = 88/163 (53%), Gaps = 26/163 (15%) Query: 599 LFHARFTLNDRREKENRVISNFGKNG--KRNVGRILVATQVVEQSLDVDFDWLITQHCPA 656 LFH+RF DR E + ++ FGK+ ++ G++L+ATQVVEQSLD+D D +I+ P Sbjct: 2 LFHSRFAFFDRMAIEAQALTWFGKDSTPEQRAGKVLIATQVVEQSLDIDVDNMISDLAPI 61 Query: 657 DLLFQRLGRLHRHHR----------------KYRPAGFEIPVATILLPD------GEGYG 694 DLL QR GRL RH R RPA +A + P+ G+ Sbjct: 62 DLLIQRAGRLQRHIRFLDGRRKTEMDTAPLTDERPAAVLHIMAPVWQPEAGADWLGDELR 121 Query: 695 RHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDD 737 ++Y + +WRTQ + E +GA + P+A RQ ++S+Y++ Sbjct: 122 NSGYVYPDHAALWRTQAILRE-HGA-IKMPEAARQLINSVYEE 162 >UniRef50_C8W344 CRISPR-associated helicase Cas3 n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W344_DESAS Length = 744 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 88/359 (24%), Positives = 151/359 (42%), Gaps = 52/359 (14%) Query: 311 VIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNL 370 ++ A TG GKTE L + F LP ++ NA+ R+ + Sbjct: 235 IVIAQTGMGKTEAGLLWLGNA-------KGFFTLPLKSAINAIYKRISEKIVREKMDERV 287 Query: 371 ILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLIS 430 L H ++ +L EQG+++ + + +++ + + +CT+DQ+ Sbjct: 288 GLLHSDTYIKYL----------EQGEKDESISLDTYYTKTRQLSL--PLTICTLDQLFNF 335 Query: 431 VLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQ 490 V + + + S +I+DEV Y + L L + G +L+ATLP Sbjct: 336 VFRYRGFEQKLATLSYSKVIIDEVQMYSPELIAYLVLGLHYITRMEGKFAILTATLPT-- 393 Query: 491 KQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADM 550 L D + D++ P Q+ I+ L + Sbjct: 394 ---------LFLDLLREQ-----------------DIIFEPAQIFTNDIIRHSLKVLDED 427 Query: 551 LPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRR 610 + +++ I+ G ++ +ICN + A Y +L ++ Q + L H+ FT DR Sbjct: 428 INSKDIVD--ISKQYGGKKILVICNTIKSALKLYHQLAQVAGKQ-QVWLLHSHFTKEDRS 484 Query: 611 EKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRH 669 KE+ ++ GK G I VATQ+VE SLD+DFD L T+ + LFQR+GR +R+ Sbjct: 485 IKESHIME-MGKRENTQCG-IWVATQIVEASLDIDFDLLFTELSDLNGLFQRMGRCYRN 541 >UniRef50_B8DAB0 Metal dependent phosphohydrolase n=8 Tax=Listeria monocytogenes RepID=B8DAB0_LISMH Length = 727 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 94/362 (25%), Positives = 153/362 (42%), Gaps = 61/362 (16%) Query: 311 VIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNL 370 V+ A TG GKTE L + + F LP +A NA+ R+ + N+ Sbjct: 237 VVIAETGMGKTEAGLLWLGN-------NKGFFTLPLRAAINAIYERI---------TKNI 280 Query: 371 ILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLIS 430 + + R L S+ + +G E + ++ +++ + I +CT+DQ+ Sbjct: 281 VTTNQAERVGLLHSETYSQYLLHEGNAEMDID--EYYTRTRQMSL--PITICTLDQLFDF 336 Query: 431 VLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQ 490 V + + S +I+DE+ Y + L L GG +++ATLP Sbjct: 337 VFRYAGFEHKLATLSYSKVIIDEIQMYSPDLLAYLILGLSYIDKFGGKFCIMTATLP--- 393 Query: 491 KQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQ--LPPRFSIQPEPICLA 548 G+ TD + N GV+ Q PE+ + R E + Sbjct: 394 --------GIVTDLLLEN---------GVDFVQ-------PEEKFVSSRIRHSMEMVH-- 427 Query: 549 DMLPDLTMLE-RMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLN 607 T +E I ++ +ICN + A+ Y LK+ + +I L H++F Sbjct: 428 ------TEIESEFIKPFFNNNRILVICNTISKAKKIYSELKDHFQGE-EIHLIHSQFIKR 480 Query: 608 DRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLH 667 DR KE + + K+ + I VATQVVE SLD+DFD L T+ + LFQR+GR + Sbjct: 481 DRSAKEKAIFKDGQKDSTKKC--IWVATQVVEASLDIDFDLLFTELSDVNGLFQRMGRCY 538 Query: 668 RH 669 R+ Sbjct: 539 RN 540 >UniRef50_C1DUL9 Crispr-associated helicase Cas3 n=3 Tax=Hydrogenothermaceae RepID=C1DUL9_SULAA Length = 755 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 124/494 (25%), Positives = 211/494 (42%), Gaps = 93/494 (18%) Query: 269 ELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYA 328 +L +S K ++G+ + + R VL + A TG GKTE A+ + Sbjct: 230 KLISYLSKKDNFKGLKPFQEKAKELRNKNVL------------LTASTGIGKTEFAVNWI 277 Query: 329 WKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSS--PNLILAHGNSRFNHLFQSI 386 + D + LP + + NAM R + +F S + L H ++ LF + Sbjct: 278 GE-------DKAFYTLPVRVSVNAMYDRFVS----IFESDKEKIGLLHSDA----LFYGM 322 Query: 387 KSRAITEQ--GQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVL--PVKHRFIRGL 442 +S ++ EE ++ +Q++++ F I + T DQ+ SVL P + L Sbjct: 323 ESNETIDEFLSLEEHIIR-----TQTSRQ-FSMPITITTADQLFTSVLKYPGYEKIYATL 376 Query: 443 GIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHT 502 + VL DE +Y ++ L+ A GG +SAT+ Sbjct: 377 MYSKVVL--DEPQSYSPDTLAIIIKGLQEIAYYGGKFCFMSATI---------------- 418 Query: 503 DPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRF-SIQPEPICLADMLPDLTMLERMI 561 +P IN L E+L P F S + I L + D + + +I Sbjct: 419 --------HPFINEY---------LKDFVEELDPVFNSEKKHKIKLENRTID-ELSKEII 460 Query: 562 AAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFG 621 + N G +V +I N V AQ Y+ LKE+ N +++ L H+ F DR EKE ++ Sbjct: 461 SQFNQGKKVLVITNTVKKAQELYKILKEIEN--LNVKLLHSLFIQIDRNEKEKQI----- 513 Query: 622 KNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIP 681 K+ V I ++TQ+VE SLD+D+D + + D L QR+GR++R + E Sbjct: 514 KSPTEPV--IWISTQLVEASLDIDYDIMFAEISTLDSLIQRMGRVYRKQGRIIN---ESD 568 Query: 682 VATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQ-WLDSIYDDAEM 740 A I++ E + + IY+N ++ T + +EE N L D +Q + +Y+ ++ Sbjct: 569 NANIVIATKEPSDKGK-IYNN-EIISFTLEALEEFNNKIL--SDEEKQNLMKKVYEIEKI 624 Query: 741 DEPEWVGNGMDKFE 754 + N + E Sbjct: 625 KNTSFYKNFIKNME 638 >UniRef50_UPI00016C5613 CRISPR-associated helicase Cas3 n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5613 Length = 647 Score = 89.0 bits (219), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 103/374 (27%), Positives = 163/374 (43%), Gaps = 84/374 (22%) Query: 314 APTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSP--NLI 371 AP G+GKT A + + Q+ + V+F PT+ATA E ++ +P + Sbjct: 177 APCGAGKTLAAWRWIAGRVKQRPVNRVLFLYPTRATAT------EGFKDYVSWAPEADAA 230 Query: 372 LAHGNSRF--NHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQ-----IGVCTI 424 L HG + + N +F RA + + ++ ++F Q I T+ Sbjct: 231 LMHGTAGYDLNGMFAVEDPRAK-------------KAFTTTDPRLFALQHWPKRIVSATV 277 Query: 425 DQVL---------ISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADV 475 DQ + +LPV + SV++VDEVH++D M L L A DV Sbjct: 278 DQFFGFMAYGYGPMCLLPV---------LADSVIVVDEVHSFDRSMFSALLGFLSA-FDV 327 Query: 476 GGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLP 535 V+ ++ATLP + +QK L GL L N R P+ L Sbjct: 328 --PVLCMTATLP-EPRQKQLVAAGLT-----------LSNPR-------------PDDLK 360 Query: 536 PRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCL-ICNLVDVAQVCYQRLKELNNTQ 594 +I P + + + +R+ AA +G + L + N V AQ RL +L+ + Sbjct: 361 ---TIADTPRYRVARVNEREVEDRIRAAVGSGKRRVLWVVNQVSRAQAIAARLTDLSLSP 417 Query: 595 VDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHC 654 + +H+RF L+DR ++ + + G+ + V TQV E SLD+D D L+T+ C Sbjct: 418 I---CYHSRFKLDDRVKRHQETVKAI-RAGEPAA--VAVTTQVCEMSLDIDADLLVTEAC 471 Query: 655 PADLLFQRLGRLHR 668 P L QR+GR R Sbjct: 472 PITSLIQRMGRCRR 485 >UniRef50_C2HJB0 ATP-dependent helicase n=1 Tax=Finegoldia magna ATCC 53516 RepID=C2HJB0_PEPMA Length = 775 Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 88/366 (24%), Positives = 158/366 (43%), Gaps = 50/366 (13%) Query: 311 VIEAPTGSGKTETALAYAWKLIDQQIADSVIF-ALPTQATANAMLTRMEASASHLFSSPN 369 VI TG GKTE +L + AD+ IF LP + NAM R++ + + Sbjct: 236 VIVGSTGLGKTEASLLWG--------ADNKIFYVLPLRTAINAMYERIKNLVKNDYDKKV 287 Query: 370 LILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLI 429 +L HG + + ++ + + + + E + + + N K I V T DQ+ Sbjct: 288 AVL-HGQT--DSVYLKELNNDFSVKNENEKFYEYYK-----NTKKLAMPITVATPDQLFD 339 Query: 430 SVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMK 489 SV + S +I+DE+ AY + ++ D+GG + + +ATL Sbjct: 340 SVFKYNGYEFKMATFSYSRIIIDEIQAYSPDILAYTIYAIRLINDLGGKIAIFTATLAPF 399 Query: 490 QKQKLLDTYGLHTDPVENNSAYPLINWRG-----VNGAQRFDLLAHPEQLPPRFSIQPEP 544 K L T S Y ++ ++ +R + ++L + + Sbjct: 400 VKD-------LLTKKSSITSEYKFKDFECKYHCFLSENKRHSMKIVEKELDSEYVEE--- 449 Query: 545 ICLADMLPDLTMLERMIAAANAGAQVCLIC-NLVDVAQVCYQRLKE-LNNTQVDIDLFHA 602 I + CLI N + AQ Y +L L+ ++ +++L H+ Sbjct: 450 ----------------ILNKRENIRTCLIVRNTIKSAQELYNQLNNNLDCSKYEVNLLHS 493 Query: 603 RFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQR 662 +FT+ DR++KE ++ + + ++ ++TQ+VE SLD+DFD + T+ LFQR Sbjct: 494 KFTVEDRKQKEVEILKDGNPKNVNDKIKVWISTQIVEASLDIDFDIMFTELSELLGLFQR 553 Query: 663 LGRLHR 668 LGR++R Sbjct: 554 LGRVYR 559 >UniRef50_O30165 ATP-dependent RNA helicase, putative n=2 Tax=Euryarchaeota RepID=O30165_ARCFU Length = 759 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 93/368 (25%), Positives = 158/368 (42%), Gaps = 72/368 (19%) Query: 311 VIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNL 370 +I APTG+GKTE +L ++ + +I++LPT+ ++ R AS F + Sbjct: 32 IIRAPTGAGKTEASLIPFIYGLNDYLPPQLIYSLPTRTLVESIGERAIKYAS--FKKLRV 89 Query: 371 ILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQV--- 427 + HG + LF+ I V TIDQ Sbjct: 90 AIHHGKKATSSLFEE--------------------------------DIIVTTIDQTAGA 117 Query: 428 LISV---LPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQ-ADVGGSVILLS 483 +SV +P + I GI ++ + DEVH D A + Q A +G I++S Sbjct: 118 YLSVPLSMPKRWGNIFVGGIASALTVFDEVHTLDPEKGLQTAAAIAMQSAKLGLPSIIMS 177 Query: 484 ATLP---MKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSI 540 ATLP +++ ++ ++ G + ++ + + + R ++ +L+ P++ Sbjct: 178 ATLPDVFIERVKERIEKNGGKVEIMDVKNESEIKSRRN----RKVELINRPDE------- 226 Query: 541 QPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLF 600 ML T+L+ A ++ ++ N V+ AQ Y L++ I L Sbjct: 227 ---------MLTADTVLKE----AENCRKLVVVVNTVERAQNLYLDLRK--KIDYPIFLL 271 Query: 601 HARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLF 660 H+R+ DR EKE FGKNGK I ++TQV+E +D+ ++++ P D L Sbjct: 272 HSRYLEKDRAEKEKSFEKVFGKNGKGEC--IFISTQVIEVGMDISSPIILSEVAPIDALI 329 Query: 661 QRLGRLHR 668 QR GR R Sbjct: 330 QRAGRCAR 337 >UniRef50_C0EXP0 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EXP0_9FIRM Length = 652 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 90/366 (24%), Positives = 161/366 (43%), Gaps = 46/366 (12%) Query: 311 VIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNL 370 ++ A TG GKTE L + F LP + NA+ R+ L +S + Sbjct: 256 IVVAQTGMGKTEAGLLWIGN-------HKGFFVLPIRTAINAIYNRLRKDM--LVNSDKI 306 Query: 371 ILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLIS 430 G L K+ E E+ + +++ + K F + + T+DQ+ Sbjct: 307 DEQVGILHSEQLEYYTKN---IEGSDEDIY----EYVKRG--KQFSLPLNISTLDQLFDF 357 Query: 431 VLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQ 490 + ++ + S +++DE+ Y+ + L L+ +GG V +L+ATLP Sbjct: 358 IFQYPGYELKLATLSYSRIVIDEIQMYNAELLAYLIFGLEKIVKMGGKVAILTATLPPFV 417 Query: 491 KQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADM 550 K+ L + P EN + + + + + + D + E + + ++ + C ++ Sbjct: 418 KELLEQHLNI---PKENQEVF-IDDKKARHHIKVCDKKINAEDIV-KLYLKNKEACKSN- 471 Query: 551 LPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVD---IDLFHARFTLN 607 + G ++ ++CN + AQ + + EL + D I +FH+RF Sbjct: 472 -------------PHKGNKILVVCNKIKTAQKIFDDVNELIKAKYDKEEIHIFHSRFIKE 518 Query: 608 DRREKENRVISNFGKNGKR--NV---GRILVATQVVEQSLDVDFDWLITQHCPADLLFQR 662 DR + E +I FG+ G + NV G I + T VVE SLD+DFD+L+T+ L QR Sbjct: 519 DREKLEKEIIE-FGQTGNKSENVVEKGGIWITTSVVEASLDIDFDYLVTELQDLCSLLQR 577 Query: 663 LGRLHR 668 +GR +R Sbjct: 578 MGRCNR 583 >UniRef50_B5YKZ7 CRISPR-associated helicase Cas3 n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKZ7_THEYD Length = 543 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 90/377 (23%), Positives = 156/377 (41%), Gaps = 75/377 (19%) Query: 311 VIEAPTGSGKTETALA-YAWKLIDQQ--IADSVIFALPTQATANAMLTRMEASASHLFSS 367 +I+APTGSGKTE LA + + I+ IA +I+ LP + N + R++ + Sbjct: 35 LIKAPTGSGKTEAVLAPFLSQFINNSFSIAPRLIYLLPMRVLVNNVAQRIKKYCEKVSPY 94 Query: 368 PNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQV 427 ++ + HG+ + F+ I V T+DQ Sbjct: 95 ISVEIQHGD--------------------------------LPSAPFFIADIIVTTLDQF 122 Query: 428 LISVLPVKHRFIRGL-----GIGRSVLIVDEVHAY-DTYMNGLLEAVLKAQADVGGSVIL 481 L + R + I S+++ DE H Y D + + A+++ ++ Sbjct: 123 LYGFARASKQVGRHIDVPAGAIASSMVVFDEAHMYRDEFTFSITRALMEILYKSNIPFVV 182 Query: 482 LSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQ 541 ++AT+P + L + + ++ R + G DL +H E +I+ Sbjct: 183 MTATMPESLDKNLFENISMDSE-------------RRIFGD--IDLKSHLE-----ITIK 222 Query: 542 PEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLK---ELNNTQVDID 598 EP+ + + + I + ++ N V AQ Y+ +K +LNN + I Sbjct: 223 EEPLIKNNEVN----ISDEILEEIKHKKTLIVLNQVGRAQRVYEEIKNRLDLNNGK--IV 276 Query: 599 LFHARFTLNDRREKENRVISNFGKNGKRNVGR-----ILVATQVVEQSLDVDFDWLITQH 653 L H+RFT +DR E +S + R I+V+TQV+E +D + L+T+ Sbjct: 277 LLHSRFTKSDRERHEKEAVSIIPHKEDGMIIRPEKRGIVVSTQVLEAGIDFSSELLLTEL 336 Query: 654 CPADLLFQRLGRLHRHH 670 PAD L QR GR R+ Sbjct: 337 APADCLVQRAGRCARYE 353 >UniRef50_B2RM87 Probable CRISPR-associated helicase Cas3 core n=1 Tax=Porphyromonas gingivalis ATCC 33277 RepID=B2RM87_PORG3 Length = 706 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 104/429 (24%), Positives = 173/429 (40%), Gaps = 75/429 (17%) Query: 310 TVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPN 369 T++ APTG+GKT+ L ++ V + LP QA+ NAM R++A + Sbjct: 235 TLVTAPTGAGKTDFLL--------RRCRGRVFYTLPFQASINAMYDRLKADLRDTDAQIY 286 Query: 370 LILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLI 429 + A + N ++ I SR + I V T Q+ Sbjct: 287 PLHAASILKLNGGYERILSRHVG------------------------ASIKVLTPHQIAA 322 Query: 430 SVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMK 489 +K + L I +I+DE+H Y ++ +++ +G + + +AT+P Sbjct: 323 LAFGLKGYEVTALDIRGCDVILDEIHTYRKETQAMVLKIVEILVALGCRIHIGTATMPTD 382 Query: 490 QKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLAD 549 LL G T E P +G FD R +I + + D Sbjct: 383 LYTGLLRLLGGETAVYE--VKLPKEVLKG------FD----------RHTIH-KAGSMED 423 Query: 550 MLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDR 609 + P + A ++ ++CN V AQ YQ + + L H+RF R Sbjct: 424 VEPVIQ------KAIEQSQKILMVCNQVKRAQQLYQEVVG-KYPAIPTLLIHSRFKRGHR 476 Query: 610 REKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRH 669 + E + + + I+V+TQVVE SLD+ FD ++T+ P D L QR GR++R Sbjct: 477 AQLELELKERYNQCQGPC---IVVSTQVVEVSLDISFDMMLTECAPIDALIQRFGRINR- 532 Query: 670 HRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQ---HIEELNGASLFFPDA 726 R G P+ I P+ E E + + ++ R+ H E L+ A + Sbjct: 533 KRSLETIGQTKPIYVIAPPENE----KEALPYELEILQRSYSSLPHCEVLHEADV----- 583 Query: 727 YRQWLDSIY 735 +Q LD++Y Sbjct: 584 -QQLLDAVY 591 >UniRef50_B4VUE8 CRISPR-associated helicase Cas3 domain protein n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VUE8_9CYAN Length = 783 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 110/420 (26%), Positives = 165/420 (39%), Gaps = 69/420 (16%) Query: 290 GYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQAT 349 G + R Q + A P +T+++A G+GKT A A+A K + + F PT T Sbjct: 296 GKKLRPFQQKIAATP--HRITLVKAGCGTGKTIGAYAWAKKWAGDR---KLFFGYPTTGT 350 Query: 350 AN------AMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQC 403 A A T +EA H SR + L + I ++G ++ Sbjct: 351 ATQGFIDYAHETDIEADLMH-------------SRAD-LDREILFSGDEDEGIDDRLAAL 396 Query: 404 CQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNG 463 W + + VCT+D VL + + I + + DEVHAYD + G Sbjct: 397 TAWRQK---------LIVCTVDTVLGLMQNNRRSLYSWSAIAQGAFVFDEVHAYDNRLFG 447 Query: 464 LLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQ 523 L + G ++L+SA+ +Q Q + G E A +I G + Sbjct: 448 ALLRFIDTFR--GAPILLMSASFTPEQIQAIQGVVG------ELGEATQIIE-----GPK 494 Query: 524 RFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVC 583 ++L PR+ I E I AD D R +V + N V Q Sbjct: 495 NLEVL-------PRYQI--ESIPSADQAWDRV---RETLTRQHQNKVLWVTNSVKTCQEL 542 Query: 584 YQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLD 643 Y K+ + + ++H+R+ +R EK VI F G + + TQV E SLD Sbjct: 543 YLEAKQQIPDSIPVLIYHSRYRYFNRLEKHKWVIDAFEHEG----AVLAITTQVCEMSLD 598 Query: 644 VDFDWLITQHCPADLLFQRLGRLHR------HHRKYRPAGFEIPVATILLPDGEGYGRHE 697 + D L+T PA L QRLGRL+R +HR +G P D Y + E Sbjct: 599 LSADLLVTPIAPASALIQRLGRLNRRVMTTANHRVKLASGKIAPTLVYPWDDSRPYSQDE 658 >UniRef50_O66694 Putative uncharacterized protein n=2 Tax=Aquificaceae RepID=O66694_AQUAE Length = 729 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 100/385 (25%), Positives = 159/385 (41%), Gaps = 71/385 (18%) Query: 286 LLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALP 345 L G Q +LQ V L V+ APTG GKTE + + D F LP Sbjct: 218 LRKKGAQLNELQNYV--LENREECLVVVAPTGYGKTEAGFIF--------LKDKGFFTLP 267 Query: 346 TQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQ 405 + +AN + R A N+ L H +S L + +K E+ + + Sbjct: 268 FRVSANGIYERARAVFGE-----NVGLLHSSS----LIELMKK----EEDELDTNTFEGI 314 Query: 406 WLSQSNKKVFLGQIGVCTIDQVLISVLPVK--HRFIRGLGIGRSVLIVDEVHAYDTYMNG 463 W + + K F + VCT DQ++ V +++ L R +++DE+ Y Y Sbjct: 315 WKNYQHSKSFAYPLTVCTPDQIMPFVFKFSGYEKYLALLSYSR--IVIDELQVYAPYTMA 372 Query: 464 LLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQ 523 + L+ D G ++++AT P + L + P + +P Sbjct: 373 FIVKALEVIKDFGSKFMVMTATFP----EFLRRFFEKMEIPFKE---FP----------- 414 Query: 524 RFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVC 583 +L PR +++ L D L + + +I + + +V +I N V A Sbjct: 415 ---------ELKPRHNVK----LLEDTLGSESSI-NLIRSLSEEGKVLVIVNTVRKA--- 457 Query: 584 YQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLD 643 Q L L N V H+RF L R K+ I F +G++ V V TQ+ E SLD Sbjct: 458 -QELSLLLNAPV----LHSRF-LQKHRAKKEEEIKEFFSSGEKGV---WVTTQLAEVSLD 508 Query: 644 VDFDWLITQHCPADLLFQRLGRLHR 668 +D D+L+T+ D L QR+GR +R Sbjct: 509 LDADFLVTELSTIDSLIQRMGRCNR 533 >UniRef50_B1XPP6 CRISPR-associated helicase n=2 Tax=Chroococcales RepID=B1XPP6_SYNP2 Length = 763 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 91/325 (28%), Positives = 137/325 (42%), Gaps = 54/325 (16%) Query: 421 VCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVI 480 VCT+D VL + I + DEVH YD G L L+ V V+ Sbjct: 401 VCTVDTVLGLFQCNRRPLYCFPAIANGAFVFDEVHCYDAKPFGTLLRFLQV---VKAPVL 457 Query: 481 LLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSI 540 L+SA++ QK + G +PVE + GA+ DL A P RF + Sbjct: 458 LMSASVLPWQKAAIEAAVG---EPVEV-----------IEGAK--DLEALPRY---RFHV 498 Query: 541 QPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLF 600 +P ER+ N+G +V +CN V A Y E +D L+ Sbjct: 499 LDQPD-----------WERVEQELNSGGKVLWVCNQVQTAIDVYD---EAKRRGLDALLY 544 Query: 601 HARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLF 660 H+R+ DRR+ V+ F + + V I + TQV E SLD+ L++Q L Sbjct: 545 HSRYRYQDRRDHHRAVVDAFKPDQTKPV--IAICTQVAEMSLDLSATLLVSQIADPAGLI 602 Query: 661 QRLGRLHRHHRKYRPAGFEIPVATILLPD-GEGYGRHEHIYSNVRVMWRTQQHIEELNGA 719 QRLGRL+RH+ + + + PD EGY + ++ M Q +E+++ A Sbjct: 603 QRLGRLNRHYCGH-------VLDALFYPDEKEGYPYKKEQLADGLAM--VQNFVEDVSQA 653 Query: 720 SLFFPDAYRQWLDSIYDDAEMDEPE 744 L QWL++ + D+ E Sbjct: 654 EL------AQWLEAFTPEPNQDDGE 672 >UniRef50_Q1Q4B7 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q4B7_9BACT Length = 808 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 119/467 (25%), Positives = 192/467 (41%), Gaps = 78/467 (16%) Query: 291 YQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETA-LAYAW-KLIDQQIADSVIFALPTQA 348 YQ Q L+D + + APTGSGKT A L Y W K D +I+ LP + Sbjct: 19 YQEEVAQRLLDGRNI-----FLRAPTGSGKTWAAILPYLWAKKQGTTFVDRLIYVLPLRT 73 Query: 349 TANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLS 408 A + A F ++ N+R +G++ V Q Sbjct: 74 LATTLYAETVACCKSGFR----VVCDPNAR---------------RGEKGELVITIQTGE 114 Query: 409 QSNKKVFLGQIGVCTIDQVLISVL------PVKHRFIRGLGIGRSVLIVDEVHAY--DTY 460 Q + F G + T+DQ L S L P + I + S+++ DE H D Sbjct: 115 QKDDPFFEGDVIFTTVDQCLSSYLNCPVSLPQRVGNINAGALLGSLIVFDEFHLLESDKA 174 Query: 461 MNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVN 520 M +E + + + ++++ATL K L + G + + Sbjct: 175 MRTAVEMLDRLKP--FSQFVIMTATLTTKSLDLLKEILGGQ--------------FVSLT 218 Query: 521 GAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVA 580 + L +H E+ I P+ + D+L + G + +I N V A Sbjct: 219 PDEVMSLPSHKEKKRAYRWIN-RPLTINDILDH-----------HNGNRSIIILNSVTRA 266 Query: 581 QVCYQRL-KELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNG-KRNVGRILVATQVV 638 Q Y+ + K L + + L H+RF DR++ E+++ FGK K NV ILV TQVV Sbjct: 267 QNIYEEMAKRLEGSNTTVFLLHSRFYSEDRKKVEDKLKGWFGKEATKTNV--ILVTTQVV 324 Query: 639 EQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAG----FEIPVATILLPDGEGYG 694 E +D+ D L T+ P + + QR GR R+ R G +E+ LPD Y Sbjct: 325 EAGIDISADNLHTEIAPLNSIIQRAGRCARYE-GVRGIGTVWIYELLTNEKGLPDFGPYR 383 Query: 695 RHEHIYSNVRVMWRTQQHIEEL--NGASLFFPDAYRQWLDSIYDDAE 739 ++H ++ T++ +E L +GA L F ++ + LD ++ + E Sbjct: 384 ENDH----KALISGTREVLERLPSDGAILDF-NSELERLDKVHSNIE 425 >UniRef50_C6PCV3 CRISPR-associated helicase Cas3 n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PCV3_CLOTS Length = 803 Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 101/399 (25%), Positives = 161/399 (40%), Gaps = 82/399 (20%) Query: 290 GYQPRQLQVLVDALPVAPGLTVIEAPTGSGKT-ETALAYAWKLIDQ-QIADSVIFALPTQ 347 G++P Q+ + A +++APTGSGKT + + + + + +I++LP + Sbjct: 17 GFEPYDFQIDLAKKVFAGKNVIMQAPTGSGKTWASIMPFLFAYYEGINFPRKLIYSLPLR 76 Query: 348 ATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWL 407 N++ + + +FN G + +Q + Sbjct: 77 VLTNSLYNDVREKV--------------DKKFN--------------GNIQVTIQTGE-- 106 Query: 408 SQSNKKVFL-GQIGVCTIDQVLISVLPV------KHRFIRGLGIGRSVLIVDEVHAYDTY 460 SN FL G I TIDQ L S+L + K I I S LI DE H D Sbjct: 107 -NSNDPYFLDGDIIFTTIDQSLSSLLSIPFSLSNKQSNINTGAIISSYLIFDEFHLLDVK 165 Query: 461 --MNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRG 518 ++ LL + ++ D +SATL KLLD Y + Sbjct: 166 RSLSTLLNII--SKLDGITPFCFMSATLS----SKLLDNY-----------------CKK 202 Query: 519 VNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVD 578 +NG+Q ++ E + Q + + + E +I N + ICN V+ Sbjct: 203 LNGSQ----ISIKESEVAKIKSQRDKVKRVFVKETTISAEEIIK--NHVKKTIAICNTVE 256 Query: 579 VAQVCY-------QRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRI 631 Q + R K LNN V + H+RF+ NDR++KE + F K NV I Sbjct: 257 TCQNLFLELKNKIDREKSLNN--VRLLCIHSRFSSNDRKDKEELIKKFFNKYSDENV--I 312 Query: 632 LVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHH 670 L++TQV+E LD+ D + + P + QR+GR R+ Sbjct: 313 LISTQVIEVGLDITCDVMHLEISPINSFLQRIGRCARYE 351 >UniRef50_A7GQ88 CRISPR-associated helicase Cas3 n=1 Tax=Bacillus cytotoxicus NVH 391-98 RepID=A7GQ88_BACCN Length = 741 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 97/366 (26%), Positives = 163/366 (44%), Gaps = 67/366 (18%) Query: 311 VIEAPTGSGKTETALAYAWKLIDQQIADS-VIFALPTQATANAMLTRMEASASHLFSSPN 369 +I A TG GKTE AL +A +DS F LP + + NA+ R+ ++ N Sbjct: 242 IIVAQTGMGKTEAALLWA--------SDSKTFFTLPLRVSINALFHRVYEKMNY----KN 289 Query: 370 LILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLI 429 + L H +S ++L +++ EE W + K F ++ TIDQ+L Sbjct: 290 VGLLHSSS-MDYLTENL----------EEDWEVIAE-----QSKHFSSKLLFTTIDQIL- 332 Query: 430 SVLPVKHR-FIRGLG-IGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLP 487 P +R + + L + S +++DE+ AYD + +L L+ VGG +L++ATLP Sbjct: 333 -KFPFLYRGYEKELATMAYSSVVIDEIQAYDPKIAAVLVRALEMIYLVGGKFLLMTATLP 391 Query: 488 MKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICL 547 + L T +N + + F + + R I+ + Sbjct: 392 ---------SIYLET-----------LNESDIISSDGFRVDTFIDDCVIRHCIEVVEKPI 431 Query: 548 ADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLN 607 D + L + ++ +I N V A Y ++KE ++ ++ +FH+ + Sbjct: 432 VDDFEKIVDLGKQ-------KKILVIANTVKRAMELYNKIKEYSD---NVHVFHSMYIQK 481 Query: 608 DRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLH 667 R E ++ F +N K G I + TQ+VE S+D+DFD L T+ D L QR GR + Sbjct: 482 HRTLIEKELLL-FDEN-KEATG-IWITTQLVEASIDIDFDVLFTEAATLDSLCQRFGRCY 538 Query: 668 RHHRKY 673 R R+Y Sbjct: 539 R-RRQY 543 >UniRef50_B5YBH9 CRISPR-associated helicase Cas3 n=1 Tax=Dictyoglomus thermophilum H-6-12 RepID=B5YBH9_DICT6 Length = 801 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 103/448 (22%), Positives = 190/448 (42%), Gaps = 60/448 (13%) Query: 314 APTGSGKTETALAYAWKL---IDQQIADS--VIFALPTQATANAMLTRMEASASHLFSSP 368 +PTGSGKT T A+A KL I+++ + +I++LP + N + S L P Sbjct: 283 SPTGSGKTLTGFAFAVKLRKRIEKEFGYTPRIIYSLPFISIINQNYDVLRNVLSKL---P 339 Query: 369 NLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVL 428 + GNS + S+ E+G E V L +S + ++ V T Q+L Sbjct: 340 DF---EGNSSAYIISHHHLSKVEYEEGDELREVDESLALIES----WESEVIVTTFVQLL 392 Query: 429 ISVLPVKHRFIRGL-GIGRSVLIVDEVHAYDTYMNGLLEAVLKAQAD-VGGSVILLSATL 486 +++ K+ F++ I RS++I+DEV L E + K + + +IL++AT Sbjct: 393 HTIIGFKNSFLKKYHNIARSIIILDEVQNIPAEYWKLTERIFKLMSQYLNCYIILMTATK 452 Query: 487 PMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPIC 546 P L+ + G + ++NN Y + +N + + + L Sbjct: 453 P------LIFSDGDTLEILDNNEVY----FEKLNRVVLYSNVKEQKGLD----------- 491 Query: 547 LADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKE-LNNTQVDIDLFHARFT 605 ++L I + ++ N + + Y+ LKE L+ + I A Sbjct: 492 --------SLLSWFIDIYDPQKSYMIVLNTIKSSIEFYRMLKEQLSLKEKSIYYLSANII 543 Query: 606 LNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGR 665 +R ++ +R+ + G N K ILV+TQVVE +D+DFD +I P D + Q GR Sbjct: 544 PKERLDRIHRIKQDLGNNKKP----ILVSTQVVEAGVDLDFDVVIRDLGPLDSVVQVAGR 599 Query: 666 LHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNV--RVMWRTQQHIEELNGASLFF 723 +R+ +K F L D +G +Y + R+ + +E + + F Sbjct: 600 CNRNFKKENGEIF-----VFFLKDDKGRSYANMVYQKLTPRITFELFSELESVKESE--F 652 Query: 724 PDAYRQWLDSIYDDAEMDEPEWVGNGMD 751 ++ + + + +E E + + ++ Sbjct: 653 IKIINKYFERLRFEKSQEESELIISALN 680 >UniRef50_Q182D7 Probable ATP-dependent helicase n=11 Tax=Clostridium difficile RepID=Q182D7_CLOD6 Length = 805 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 114/481 (23%), Positives = 202/481 (41%), Gaps = 71/481 (14%) Query: 269 ELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYA 328 E+ ++ N+ Y+ L N + +Q + L LTV A TGSGKT Sbjct: 262 EIDNMILNE-IYKSQGNLEKNNIEFNTIQKRLRELSGRNVLTV--AFTGSGKTAADYRKT 318 Query: 329 WKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPN-LILAHGNSRFNHLFQSIK 387 +K F +P + +A + + ++F + N L N L I Sbjct: 319 FK--------RKFFLVPNKISAESFYRK------NIFQNKNDLDTRSSNDYIGLLHGDIN 364 Query: 388 SRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRS 447 + E E +V + + S F + T+DQ+L+S+ + + Sbjct: 365 LYSENEDNGEHDFVLTLRDIDLSIN--FCKPCVIATVDQLLLSMFKFPGYEKIFAAVKNA 422 Query: 448 VLIVDEVHAYDTYMNGLLEAVLK-AQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVE 506 + VDEVH + M +L ++ A + L++ATLP K+++++ + + Sbjct: 423 SITVDEVHLLEPKMFLILIYFMQFACKYLDVDFHLMTATLPKSYKEQMINKGIIFQEESN 482 Query: 507 NNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANA 566 N + ++ S + E IC + + E+ I + Sbjct: 483 EN-------------------VTDKGEIVFIESNKEEEICEGKDVKVSFIKEKEIKSIVE 523 Query: 567 GA-----QVCLICNLVDVAQVCYQRLKELNNTQ---VDIDLFHARFTLNDRREKENRVIS 618 A ++ +I N +D Y+ LKE + + VDID+ H+RF D++EK ++++ Sbjct: 524 DALENKQKILIIKNTIDSVNRTYEFLKENLSDKYGGVDIDVLHSRFKFKDKKEKYSKIL- 582 Query: 619 NFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGF 678 NG+ G I ++TQ VE SLD+DF+ +I+ D L QR+GR +R++ KY F Sbjct: 583 ----NGE---GDIWISTQSVEISLDLDFNIIISDLATMDSLIQRMGRCNRNN-KYEYGNF 634 Query: 679 EIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEE-LNGASLFFPDAYRQWLDSIYDD 737 I LP + IY N ++ T+ +++ L S+F + LD YD+ Sbjct: 635 YI------LP------SEDKIYDN-KLKNTTKNILKDILKTNSIFTMGIRKTILDDYYDN 681 Query: 738 A 738 + Sbjct: 682 S 682 >UniRef50_B0TFM5 Crispr-associated helicase cas3, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TFM5_HELMI Length = 837 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 95/395 (24%), Positives = 159/395 (40%), Gaps = 75/395 (18%) Query: 289 NGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQI--ADSVIFALPT 346 G +P Q V + ++ APTGSGKT AL + + AD +I+A+P Sbjct: 13 TGKKPYGFQTQVAREVLEQERVILRAPTGSGKTWAALLPFLYAKENRTPWADRLIYAVPL 72 Query: 347 QATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQW 406 + + + ++ F K R + G Sbjct: 73 RTLGKNLYSTIKKRLDDQFPG-------------------KYRVTMQTG----------- 102 Query: 407 LSQSNKKVFLGQIGVCTIDQVL-------ISVLPVKHRFIRGLGIGRSVLIVDEVHAYDT 459 + +F G I +CT+DQ+L +V P + + G + + +++DE H T Sbjct: 103 -DVPDDPLFEGDIILCTVDQLLSAYILHPYAVGPRRANVVAG-ALSGAYVVIDETHLL-T 159 Query: 460 YMNGLLEAVLKAQADVG-GSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRG 518 L AV + G + + ++AT+P DT D V I Sbjct: 160 PRESLATAVDMVRRYQGLMTALFMTATMP--------DTV---MDEVARRCKAKTITV-- 206 Query: 519 VNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVD 578 ++ + Q+ P I I L+ P+ + E ++ ++CN VD Sbjct: 207 --TEEQMESDPQSRQVKPERRIHRMTIPLS---PEAVLSEHRTSS-------LVVCNTVD 254 Query: 579 VAQVCYQRLKEL---NNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGR-ILVA 634 A YQ LK++ N + + + L H+RF DR E R+ FG + GR I+++ Sbjct: 255 RAVRFYQTLKKMLGENKSDIPLFLLHSRFLPEDRARLERRITEQFGPD---RTGRGIIIS 311 Query: 635 TQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRH 669 TQV+E +D+ D L T+ PA+ + QR GR+ R+ Sbjct: 312 TQVLEAGVDISADVLHTELAPANAIVQRSGRVARY 346 >UniRef50_C5A6D4 CRISPR-associated helicase Cas3, core n=1 Tax=Thermococcus gammatolerans EJ3 RepID=C5A6D4_THEGJ Length = 667 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 103/403 (25%), Positives = 162/403 (40%), Gaps = 87/403 (21%) Query: 289 NGYQPRQLQVL----VDALPVAPGLTVIEAPTGSGKTETAL------AY--AWKLIDQQI 336 G++P Q+ +D G VIE PT GKTE A+ AY W + Sbjct: 16 TGHEPYDYQLRAWEKIDTAMSNGGKVVIEVPTAGGKTEAAIVPFLVEAYNGTWAV----- 70 Query: 337 ADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQ 396 +I+ALPT++ R+ + + L + + I E G Sbjct: 71 -SRLIYALPTRSLVEKQAERIRKLLVKVLE----LKGKSEREAKELAERL---VIVEYGL 122 Query: 397 EEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLP---VKHRFIRGLG-IGRSVLIVD 452 E FLG + V T D L + V RF G I +S+++ D Sbjct: 123 EPT-------------HAFLGWVVVTTWDAFLYGLAAHRTVGRRFTFPAGAIAQSLVVFD 169 Query: 453 EVHAY---DTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNS 509 EV Y YM LL V+K + V+++SAT+P + ++ + S Sbjct: 170 EVQMYQDESLYMPRLLSLVVKQLSKANVPVVVMSATIPSELRKMI--------------S 215 Query: 510 AYP-LINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGA 568 P ++ R +G + PE+ + S+Q + +L D+ A Sbjct: 216 GEPEIVMVRSDDGKK-------PER--GKVSVQVVEGTIESVLDDIK------KALKRKE 260 Query: 569 QVCLICNLVDVAQVCYQRLKEL-NNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRN 627 +V ++ N VD A Y LK + V+ L H RF + DR++KE + + Sbjct: 261 RVLIVRNTVDRAVSTYLTLKPVAEELGVEALLIHGRFAVEDRKKKERAL----------D 310 Query: 628 VGRILVATQVVEQSLD-VDFDWLITQHCPADLLFQRLGRLHRH 669 +++VATQVVE LD ++ ++T P D L QR+GR R Sbjct: 311 GAQLIVATQVVEAGLDLLNVGLVVTDIAPLDALIQRIGRCARR 353 >UniRef50_A9WBB7 CRISPR-associated helicase Cas3 n=3 Tax=Chloroflexus RepID=A9WBB7_CHLAA Length = 801 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 96/374 (25%), Positives = 157/374 (41%), Gaps = 69/374 (18%) Query: 310 TVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASH-LFSSP 368 V++APTG+GKT AL V F R + + L+ +P Sbjct: 20 VVLQAPTGAGKTRAAL--------------VPFI-------EGFFDRPDTTPRKCLYVTP 58 Query: 369 NLILAHGNSRFNHLFQSIKSRAITEQGQE-EAWVQCCQWLSQSNKKVFLGQIGVCTIDQV 427 +LA ++F ++ + +R G++ + +Q + Q + F G + CT+DQ Sbjct: 59 MRVLA---NQFYAEYRELAARYQRLHGRQLDVRIQTGE---QPEDRRFEGDLIFCTVDQF 112 Query: 428 LISVL------PVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGG--SV 479 L S L P + + + + L+ DE H +D + L +L + G Sbjct: 113 LSSYLMMPYSLPYRLANVNAGALAGAYLVFDEFHLFDP--DAALPTILHVLRQLHGLAPF 170 Query: 480 ILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPL--INWRGVNGA-QRFDLLAHPEQLPP 536 +L++AT Q L L V SA + IN RG A QR Sbjct: 171 MLMTATFSSAMLQSLATL--LQPAQVVTLSAAEIAAINTRGGQPARQRV----------- 217 Query: 537 RFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVD 596 + + +P+ A +L A+ +ICN V A+ Y LK+ + + Sbjct: 218 -WQVADQPLQAAAVL------------AHHQHASLVICNTVRRAREVYAELKQQAPPETE 264 Query: 597 IDLFHARFTLNDRREKENRVISNFGKNGKRNVGR-ILVATQVVEQSLDVDFDWLITQHCP 655 + L H++F +DRR+ E ++ S G + +R I+VATQVVE +D+ + L T+ P Sbjct: 265 VLLLHSQFLPDDRRQIEAKLRSRLGVSSQRQQANLIVVATQVVEVGVDISVEVLHTELAP 324 Query: 656 ADLLFQRLGRLHRH 669 L QR GR R+ Sbjct: 325 PASLIQRAGRCARY 338 >UniRef50_A1RZX1 CRISPR-associated helicase Cas3 n=1 Tax=Thermofilum pendens Hrk 5 RepID=A1RZX1_THEPD Length = 566 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 97/372 (26%), Positives = 147/372 (39%), Gaps = 74/372 (19%) Query: 309 LTVIEAPTGSGKTETALAY----AWKLIDQQIADSVIFALPTQATANAMLTRMEASASHL 364 L V+ APTG GKTE A A A K + + S+++ALPT++ A+AML R+ Sbjct: 40 LVVVRAPTGCGKTEAATAPFISDAAKGSRRWV--SLVYALPTRSLASAMLRRL------- 90 Query: 365 FSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTI 424 SR++ G E + G + V T Sbjct: 91 -----------------------SRSLAAAGAEWTTATLSYGGLWEARPYLEGDVAVTTY 127 Query: 425 DQVLIS----VLPVKHRFIRGLGIGRSVLIVDEVHAYDT---YMNGLLEAVLKAQADVGG 477 D +L V P H + + S++++DE H Y LL A + + +G Sbjct: 128 DTLLHQFYGVVSPGYHLLLPAAKVSGSLVVLDETHLLQDAHWYAPSLLPAHVASLVSLGA 187 Query: 478 SVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPR 537 V+++ AT+P ++L Y L V +++ R D+ +P Sbjct: 188 QVLVVGATVPEVLLEELRREYRL----VSRGEEPAVVDAADEPARGRLDVELRGGGMPV- 242 Query: 538 FSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDI 597 E +C ++LE A ++ N V+ A Y+ L+ V Sbjct: 243 -----EGLC--------SLLE------GAPRPALVVVNKVEKAVEAYRALRSCLGGSVA- 282 Query: 598 DLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPAD 657 L H+R R RV F +G +LVATQVVE LD+D +L+T+ P D Sbjct: 283 -LLHSRLRGGVR----ARVEGLFEGDGAPG-DLVLVATQVVEAGLDLDVRFLVTEVSPVD 336 Query: 658 LLFQRLGRLHRH 669 L QRLGR R Sbjct: 337 SLIQRLGRCARR 348 >UniRef50_D0MJ67 CRISPR-associated helicase Cas3 n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MJ67_RHOM4 Length = 791 Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 119/461 (25%), Positives = 198/461 (42%), Gaps = 61/461 (13%) Query: 308 GLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSS 367 G ++ APTGSGKTE AL +A + + + +V + LP QA+ NAM R + + Sbjct: 274 GSLLLAAPTGSGKTEAALLWARRQLQEGRRGAVCYLLPYQASLNAMYRRF--VDKYGLNR 331 Query: 368 PNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQV 427 ++ L H + +++ + +TE Q + L + +++ L + T Q+ Sbjct: 332 KDVALLHSRA-VQAVYRELVRGEVTEHAVAYQQAQRFKALGRLHQQPVL----LATPYQL 386 Query: 428 LISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLE---AVLKAQADVGGSVILLSA 484 L + + + + + LIVDE+H Y+ + GLL ++L+ DV + +++A Sbjct: 387 LRAAFRLPGYEGQWAMLQGAHLIVDEIHGYEPFRLGLLLGLFSMLQQHFDV--RLAVMTA 444 Query: 485 TLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEP 544 T+P + GL ++ + WR + QL RF + Sbjct: 445 TMPSWLR-------GLLERELK-------VVWRSADS-----------QLYERFC-RHRL 478 Query: 545 ICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQ----RLKELNNTQVD---- 596 L + +LE ++ + G V ++ NLV AQ + RL + D Sbjct: 479 FLKEGKLENERVLEEIVQRVHQGEAVLVVTNLVAAAQQLAEALAVRLNSPWPQRCDPEHD 538 Query: 597 -IDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCP 655 + L H+RFT DR ++E V+ R G ++VATQVVE SLDVDFD + T P Sbjct: 539 PVLLVHSRFTAEDRLQREA-VLQARVHRQLRQGGFVVVATQVVEVSLDVDFDTIYTDPAP 597 Query: 656 ADLLFQRLGRLHRHH-RKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIE 714 + L QR GR++R K RP P Y +M RT +H+ Sbjct: 598 LEALVQRFGRVNRRRCFKERPVFVMTEAMDWTWP-----------YRQEALMRRTVEHLT 646 Query: 715 ELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFES 755 +G + WLD++Y+ + V G +E+ Sbjct: 647 RFDG-QMIDEAMIGVWLDAVYEPEVPSLQQEVARGRSSYET 686 >UniRef50_UPI0001C159E2 CRISPR-associated helicase Cas3 n=1 Tax=Raphidiopsis brookii D9 RepID=UPI0001C159E2 Length = 371 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 66/235 (28%), Positives = 112/235 (47%), Gaps = 40/235 (17%) Query: 444 IGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTD 503 + SV+++DEVH++ M E++L V+ ++ATL +K+ L T Sbjct: 21 LADSVVVIDEVHSFSPKM---FESLLSFLEHFDIPVLCMTATLSTSRKKAL-------TS 70 Query: 504 PVENN------SAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTML 557 +E + +P + + ++ + PR+ I +A+ Sbjct: 71 DLEKKQLGLALAVFPTEEKQEMEELEK-------AENRPRYLISSCDQAIAET------- 116 Query: 558 ERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVD---IDLFHARFTLNDRREKEN 614 I A G +V + N +D C Q+ +EL + D I ++H+RFTL DR++K Sbjct: 117 -EAILAFKQGKRVLWVVNTIDR---CRQKARELESILGDNTGIIVYHSRFTLKDRKDKHQ 172 Query: 615 RVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRH 669 + ++ F ++ K++V I V TQV E SLD+D D LIT+ P + QR GR +RH Sbjct: 173 QTVNAF-QSQKQSV--IAVTTQVCEMSLDLDADVLITEIAPISSMVQRFGRSNRH 224 >UniRef50_A8UTP5 Putative uncharacterized protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UTP5_9AQUI Length = 568 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 85/363 (23%), Positives = 148/363 (40%), Gaps = 74/363 (20%) Query: 311 VIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNL 370 ++ A TG GKTE + + D F +P + +ANA+ R A +FS + Sbjct: 92 LVVASTGYGKTEAGFIF--------LKDKGFFTIPIRTSANAIFGR----AREVFSEEEV 139 Query: 371 ILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLIS 430 L H + L S R +++ + +L+++ F + V T DQ+ Sbjct: 140 GLLHSTAPLFLLENSEDRRNF-----DKSTIVSDIFLTKN----FAKPLIVSTPDQLFPF 190 Query: 431 VLPVK--HRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPM 488 V K +F+ R +++DEV ++ G L ++ GG V++++ATLP Sbjct: 191 VFRPKGFEKFLSLFSYSR--VVIDEVQLFEPQTLGFLVKAIEKAHQFGGKVMVMTATLP- 247 Query: 489 KQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQ-RF--DLLAHPEQLPPRFSIQPEPI 545 +Y + +G++ + RF D + H +L P E + Sbjct: 248 ---------------------SYVRRDLQGIDLKEGRFITDTVRHNVKLIPMSITSGEGL 286 Query: 546 CLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFT 605 L + L+ + + N + + + V +V H+ F Sbjct: 287 KL---IKSLSERGKALVITNTRTKALELKEALGVGEVL-----------------HSWFI 326 Query: 606 LNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGR 665 DR++KE + F K + + TQ+ E SLD+D D+LIT+ AD L QR+GR Sbjct: 327 QKDRKKKEEEIKDFFDSEEKG----LWITTQIAEVSLDLDADFLITELSTADSLLQRMGR 382 Query: 666 LHR 668 +R Sbjct: 383 ENR 385 >UniRef50_UPI0001BC52A9 metal dependent phosphohydrolase n=1 Tax=Fusobacterium sp. 3_1_5R RepID=UPI0001BC52A9 Length = 801 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 100/377 (26%), Positives = 153/377 (40%), Gaps = 66/377 (17%) Query: 310 TVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASA-SHLFSSP 368 ++ A TG GKTE L W + D + F LP + +A+ R++ + Sbjct: 263 VIVVAQTGLGKTEAGL---WWIGDHK----GFFILPLRTAIDAIYDRIKNKIIKNDRVEE 315 Query: 369 NLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLG-QIGVCTIDQV 427 L L HG S ++L + E+ +E +W + K L + +CT+DQ+ Sbjct: 316 RLALLHGESLESYL-------QLWEKEKELQEGSGFEWENYYIKTRQLSLPLTICTLDQL 368 Query: 428 LISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLP 487 V + + + S +++DEV Y + G L L +GG +L+AT P Sbjct: 369 FPFVFRYRGYEAKLATMAYSKVVIDEVQMYGPDLVGFLIVGLTMIQKMGGKFAILTATFP 428 Query: 488 MKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICL 547 K L+ GL E + P + + Q IQ E Sbjct: 429 GFIKD-LMREQGL-----EFKMSTPYVKEESRHSVQ---------------WIQKE--IN 465 Query: 548 ADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKE---------LNNTQVD-- 596 AD I +V +ICN V Q Y L E L++ +D Sbjct: 466 ADF----------ILEKYKNNRVLVICNTVKRCQEIYHDLYEKMEISQEKLLSHDIMDRE 515 Query: 597 IDLFHARFTLNDRREKENRVISNFGK-----NGKRNVGRILVATQVVEQSLDVDFDWLIT 651 ++LFHA+F DR +E + I FG N + I +++ VE SLD+DFD LIT Sbjct: 516 LNLFHAKFIKKDRAIRE-KAILEFGSLLKQDNTPNDRQGIWISSSAVEASLDIDFDILIT 574 Query: 652 QHCPADLLFQRLGRLHR 668 + + LFQR+GR R Sbjct: 575 ELSDMNSLFQRMGRCFR 591 >UniRef50_Q1CW46 CRISPR-associated helicase Cas3 n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1CW46_MYXXD Length = 746 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 110/410 (26%), Positives = 157/410 (38%), Gaps = 64/410 (15%) Query: 290 GYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQAT 349 G+ PR Q V A AP LT++ A GSGKT A AY W Q + PT T Sbjct: 267 GHTPRPFQEEV-ARSAAP-LTLVRAGCGSGKT--AAAYLWA-ARQHPGRPLWLTYPTMGT 321 Query: 350 ANAMLTRMEASASHLFSSP-NLILAHGNSRFNHLFQSIKSRAI--TEQGQEEAWVQCCQW 406 A E +L + L H + + ++ A T ++ W Sbjct: 322 AT------EGFRDYLHGADVEARLQHSRAEVDFDIFGLRDGAAPGTSSRDQDRLDALRSW 375 Query: 407 LSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLE 466 + + CT D VL V + G+ + ++ DEVHAYD + G L Sbjct: 376 GADAMS---------CTADTVLGLVQSQRQGLYAWPGLCAACVVFDEVHAYDDRLFGCLL 426 Query: 467 AVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFD 526 L+A G +L++A+LP + LD + V S V G + + Sbjct: 427 RFLEALP--GIPALLMTASLPATR----LDVLRGMCERVHGRSLA------EVEGPEDLE 474 Query: 527 LLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQR 586 L + R + +A+ L D +V + N VD C + Sbjct: 475 TLPRYQ----RLDVAEPWALVAECLRD-------------HGKVLWVSNTVDR---CMRT 514 Query: 587 LKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDF 646 + + L+H+RF DR + VI F G+ TQV E SLD+ Sbjct: 515 AEAGTSHGARALLYHSRFRYEDRVRRHGDVIEAFATEGRAAFAST---TQVAEMSLDLSA 571 Query: 647 DWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVAT-ILLP-DGEGYG 694 D L+T P L QRLGRL+R RPA PV ++LP DG Y Sbjct: 572 DLLVTDLAPIPALIQRLGRLNRRSTLERPA----PVRPFVVLPFDGPPYA 617 >UniRef50_B7KMS0 CRISPR-associated helicase Cas3 n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7KMS0_CYAP7 Length = 827 Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 71/269 (26%), Positives = 116/269 (43%), Gaps = 52/269 (19%) Query: 421 VCTIDQVLISVLPVKHRFIRGL-GIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSV 479 V T ++ ++ R I + I +SV++ DE+HA+D + G L LK ++ V Sbjct: 438 VVTTADTILGLMANSRRGIYSIPAIMQSVIVFDEIHAFDEVLLGHLLVFLKNFPNL--PV 495 Query: 480 ILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFS 539 +L++A+LP + Y + + + A + G R + L E+ + Sbjct: 496 LLMTASLP--------EQYLQAIEKIRPDLAL-------IPGDSRLEEL---ERYTIDYP 537 Query: 540 IQPEPI------CLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCY-QRLKELNN 592 E + CLA+ +V + N V+ A + Y Q + N Sbjct: 538 TTEEKVWQAVKECLAE-----------------NGKVLWVRNQVEWANIIYHQAITHAEN 580 Query: 593 TQV----DIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDW 648 V I+++H+R DR + +VI +F K G+ L+ATQV E SLD+ D Sbjct: 581 EPVFANTSINVYHSRLRYKDRSYRHRQVIDDFSKKGQ---SAFLIATQVAEMSLDLSADL 637 Query: 649 LITQHCPADLLFQRLGRLHRHHRKYRPAG 677 LIT P L QR+GRL+R +P Sbjct: 638 LITDIAPIPSLIQRMGRLNRRATPEKPGN 666 >UniRef50_Q1AZD4 CRISPR-associated helicase, Cas3 family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZD4_RUBXD Length = 821 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 112/445 (25%), Positives = 190/445 (42%), Gaps = 94/445 (21%) Query: 307 PGLTVIEAPTGSGKTETALAYAWKLIDQQIADS------VIFALP----TQATANAMLTR 356 P + + APTGSGKT TAL A +L +++A+ VI+ALP + A + Sbjct: 290 PAVLSLTAPTGSGKTLTALEVALRL-RERVAEELGHRPRVIYALPFVNIIEQNAGVIEEV 348 Query: 357 MEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFL 416 + A HL + NL +HL +S ++E E V+ +++ ++ Sbjct: 349 LRRRA-HL--AQNLP--------DHLLRSHHLAPLSEGDDENTEVEERLLPAEAWEQ--- 394 Query: 417 GQIGVCTIDQVLISVLPVKHRFIRGL-GIGRSVLIVDEVHAYDTYMNGLLEAVLKAQA-D 474 +I V T + S++ ++R ++ L I SV+++DEV + L+ VL D Sbjct: 395 -EIVVTTFVSLFESLVTNRNRPLKRLHNIAGSVVVLDEVQSIPYEQWRLVGHVLTTLVRD 453 Query: 475 VGGSVILLSATLP--MKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPE 532 +G +VI ++AT P + + ++LL P ++RG++ Sbjct: 454 LGCTVIQMTATRPRILPEARELLSA--------------PERHFRGLS------------ 487 Query: 533 QLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRL----- 587 R I P P L DL + + G + ++ N + + Y++L Sbjct: 488 ----RTRIIPRPEV--KTLDDLASF--VEERRSGGGSLLVVLNTISDSVELYRKLGERLG 539 Query: 588 ----KELNNTQVDIDLFHARFTLND-RREKENRVISNFGKNGKRNVGR----ILVATQVV 638 +E ++F+ + +R + R++ KR +GR ++V+TQVV Sbjct: 540 LRGYREYGRVPGPPEIFYLSTNITPWQRSRRVRLL-------KRCLGRGLRPLVVSTQVV 592 Query: 639 EQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEH 698 E +D+DFD +I P D + Q GR +R PA PV + L DG G R E Sbjct: 593 EAGVDLDFDEVIRDQGPLDSIVQVAGRCNRGGASPEPA----PVHVVFLEDGRGRARAET 648 Query: 699 IYSNV-----RVMWRTQQHIEELNG 718 +Y V R M R + EL+ Sbjct: 649 VYGRVLPLISREMLREEVEEPELHA 673 >UniRef50_B5GV92 Crispr-associated helicase cas3 n=1 Tax=Streptomyces clavuligerus ATCC 27064 RepID=B5GV92_STRCL Length = 838 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 99/388 (25%), Positives = 157/388 (40%), Gaps = 51/388 (13%) Query: 308 GLTVIEAPTGSGKTETALAYAWKLIDQQIA-DSVIFALPTQATANAMLTRMEASASHLFS 366 G + APTGSGKTE LA+A I V++ LP +A+ NA+ R+ + L Sbjct: 313 GHLTLVAPTGSGKTEAGLAWAATQIGTMPGRPRVVWTLPYRASLNAIRRRL---SEDLIP 369 Query: 367 SP-----NLILAHGNSRFNHLFQSIKSRAI-TEQGQEEAWVQCCQWLSQSNK-KVFLGQI 419 P ++ L HG L + E Q + +Q+ ++F ++ Sbjct: 370 VPGERKADIGLLHGTVAQTLLADGLDDDCPGREPNTPPTADQARKARAQAGAMRLFTQRV 429 Query: 420 GVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSV 479 V T Q+L + L V ++DE+HAY+ G L A ++ +G Sbjct: 430 RVATPHQLLSGAIAGPAYSSVLLEQANCVFVLDELHAYEPRTFGRLCAAMRLWERLGSRF 489 Query: 480 ILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFS 539 +LSATL + ++ +E + P+ R G+ + H R + Sbjct: 490 AVLSATL----AEVMIRI-------IEESVEQPVTVHRSPEGS---GPVRH------RLT 529 Query: 540 IQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDID- 598 + PI + + +R+ N G V + N V AQ + +L + D Sbjct: 530 LDELPIDAPESV------QRIRDWLNEGHSVLAVVNTVARAQELFGQLADDARAARPGDP 583 Query: 599 ----LFHARFTLNDRREKENRVISNF-----GKNGKRNVGRILVATQVVEQSLDVDFDWL 649 L H+RF DR E ++ G R G ++VATQ VE SL +DFD Sbjct: 584 HAALLLHSRFRNGDRDTIERALLRRHPERRPGDGALR--GGLVVATQAVEVSLQLDFDRA 641 Query: 650 ITQHCPADLLFQRLGRLHRHHRKYRPAG 677 + P + + QR GR++R R P G Sbjct: 642 AVECAPVEAVAQRAGRVNR--RGLHPDG 667 >UniRef50_A9GDE7 ATP-dependent RNA helicase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GDE7_SORC5 Length = 823 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 105/419 (25%), Positives = 168/419 (40%), Gaps = 69/419 (16%) Query: 290 GYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYA--WKLIDQQIADS---VIFAL 344 GY+P Q +V V T+ EA GSGK+ A +A W + S + F L Sbjct: 295 GYRPFQERVAASPSRV----TLAEAGCGSGKSVAAYLWAREWAARREAAGASGFRLFFCL 350 Query: 345 PTQATAN------AMLTRMEASASHLFSSPNL-ILAHGNSRFNHLFQSIKSRAITEQGQE 397 PT T+ A+ + A H +S +L LA + +RA + Sbjct: 351 PTTGTSTEHFKDYALEADVPAELVHSRASVDLHTLA--TTADQEEDDDQDARAGATRRDR 408 Query: 398 EAWVQCCQWLSQSNKKVFL---GQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEV 454 A + + + ++ V T D VL + + I +S ++ DE+ Sbjct: 409 TAPAESALRAERDKIEALALWDARVAVATADTVLGLMANARRALCALPAIVQSAIVFDEI 468 Query: 455 HAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYG-LHTDP----VENNS 509 HA+D + G L L+ + V+L++A+LP +++ L + LH P +E Sbjct: 469 HAFDDQLFGHLLVFLRNFPGI--PVLLMTASLPEARRRALAEVRSDLHIVPGPPDLETLP 526 Query: 510 AYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQ 569 Y L+ GV C ++ D + E G + Sbjct: 527 RYLLVEAEGVEA------------------------CWPEI--DGCLRE--------GGK 552 Query: 570 VCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVG 629 V + N V+ A Y+ +E + +D++H+R DR + RVI F + G V Sbjct: 553 VLWVRNRVEWANAAYRSARE-RFQGMSVDVYHSRLRYRDRSRRHRRVIDRFKRAG---VP 608 Query: 630 RILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLP 688 +LVATQV E SLD+ D L+T + QRLGRL+R P P +++P Sbjct: 609 ALLVATQVAEMSLDLSADLLVTDEASVPAMIQRLGRLNRRATPESPGS---PKQALIVP 664 >UniRef50_B1L410 CRISPR-associated helicase Cas3 n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L410_KORCO Length = 564 Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 100/437 (22%), Positives = 184/437 (42%), Gaps = 48/437 (10%) Query: 309 LTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSP 368 +++IEAPTG GK+ + A A + +++ + + A P + L + + L Sbjct: 36 VSIIEAPTGYGKSAISQAIALRSLEEGL--KCVIAFPLRTLLEDQLAKFRGTLRKL---- 89 Query: 369 NLILAHGNSRFNHLFQS-IKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQV 427 +L + +R+ H +S R IT + + + + F G T Sbjct: 90 DLDERYVGARYMHYPESRYLIRPITLTTADTLSLTLFGIAPEDLETAFKHYDGTLTGS-- 147 Query: 428 LISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGL--LEAVLKAQADVGGSVILLSAT 485 + H + S L++DEVH L L A++ GG +SAT Sbjct: 148 ------MGHYLFSRAMVLLSDLVLDEVHLLSDTTKSLNFLIALIWIVTFHGGRATFMSAT 201 Query: 486 LPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPI 545 +P K + LL I + + ++ D E+ R+ + E + Sbjct: 202 IP-KALENLL------------RRECEGIGLKIIRFSEDPDNAFLEERRKKRYEVNLEKL 248 Query: 546 CLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVD-IDLFHARF 604 +D ++ + I + + ++ N V+ A Y+ ++E + + D I L H+RF Sbjct: 249 G-SDKFERISEWIK-IGMRDGFRRAIVVFNTVNEAIEFYRFVRENLDLRKDRILLLHSRF 306 Query: 605 TLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLG 664 + DR K R+ RN +LV+TQV+E +D+ D ++ PA L QRLG Sbjct: 307 SGKDREAKMRRI------EELRNEEYLLVSTQVIEAGVDISSDLFVSDLAPASSLIQRLG 360 Query: 665 RLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFP 724 R R+ G + A + +G+G +++ +Y ++ + RT +E N P Sbjct: 361 RFLRY------GGEQEGRAFLWYEEGDG-EKYKGVY-DIDLFERTLYFLEG-NDVRFHDP 411 Query: 725 DAYRQWLDSIYDDAEMD 741 ++Y+ LDS+YD++ + Sbjct: 412 ESYQALLDSVYDESSFN 428 >UniRef50_D2PIF7 CRISPR-associated helicase Cas3 n=11 Tax=Sulfolobus RepID=D2PIF7_SULIS Length = 507 Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 101/446 (22%), Positives = 176/446 (39%), Gaps = 109/446 (24%) Query: 310 TVIEAPTGSGKTETALAYAWKLI-DQQIADSVIFALPTQATANAMLTRMEASASH-LFSS 367 +++APTG GKT + A + D + VI LP +A + +++ A + S+ Sbjct: 42 VILKAPTGYGKTTLTMILANAVSSDIDLGSRVIHVLPYRAIVQDLYLKLKNYADKGVIST 101 Query: 368 PNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQV 427 N+ Q + + F+ ++ V T+D Sbjct: 102 KNI--------------------------------GAQDMDYQDSPFFMKKVNVTTLDTF 129 Query: 428 LISV--LPV------------KHRFIRGLGIGRSVLIVDEVH--AYDTYMNGLLEAVLKA 471 ++++ LP + F R L I S++I DE H D G A L+ Sbjct: 130 ILNLFKLPTIDFKLIFKNHGSHYEFPRAL-IYSSIVIFDEFHLLGEDGKSLGAGLAALEV 188 Query: 472 QADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHP 531 D G +++ SAT+ ++ L++ G + V N + + VN +L + Sbjct: 189 LKDAGVPIVVTSATIDKGLERVLMNKLGKNVKVV-NADDFKIDRKVYVN------VLEND 241 Query: 532 EQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELN 591 E SI E + G +V L+ N A Y++LK + Sbjct: 242 E-----ISITEEKV-------------------KEGKRVLLVYNTRMGAIEAYKKLKGMG 277 Query: 592 NTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLIT 651 + + L H++F+ DR +K N++ N +++V+TQV+E +D FD LIT Sbjct: 278 LSPI---LIHSKFSKKDRIDKVNKI----------NEAKLVVSTQVIEAGIDTSFDVLIT 324 Query: 652 QHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLP-DGEGYGRHEHIYSNVRVMWRTQ 710 + P+ L QR GR+ R+ + R ++ + P G+ Y E + T Sbjct: 325 EASPSHNLIQRAGRVARYGKGGRG---KLEGEVYIFPFSGKVYDERE--------VKETV 373 Query: 711 QHIEELN--GASLFFPDAYRQWLDSI 734 + I EL +L Y + +DSI Sbjct: 374 ERIRELKTIDENLLIERNYTEVIDSI 399 >UniRef50_B3U4W9 CRISPR-associated helicase Cas3 (Fragment) n=1 Tax=Candidatus Nitrospira defluvii RepID=B3U4W9_9BACT Length = 281 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 72/282 (25%), Positives = 110/282 (39%), Gaps = 21/282 (7%) Query: 9 HYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLL 68 HYWGK+ + H L+YH LDVAA T R L + ++ W++ Sbjct: 7 HYWGKADEKYVGATTWHPLVYHSLDVAACGHALLTVQPSWLRTMQRLSGLRSEILQQWII 66 Query: 69 FFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLS 128 F +A+HD GKF FQ+ + W L+G + + H G L+ Sbjct: 67 FLLAIHDAGKFSDGFQFLRPDLW-------KILHGRTDKARYGERHDTLGY------ELT 113 Query: 129 EQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQD- 187 +L + D A + PW+ +VTGHHG + + S + + D Sbjct: 114 LANLSQWLRQPDLAKRSGQCLQPWLASVTGHHGKPPKNLSKGDSAMLLRDHYPVHVRNDV 173 Query: 188 KQAREEWISVLEALFLTPAGLSINDIP--PDCSSLLAGFCSLADWLGSWTTTNTFLFNED 245 KQ E ++L + L + S +L+G ADWLGS NT F Sbjct: 174 KQFILETQNLLMSQDFQWTALLEGQVERYRQASWMLSGLAVTADWLGS----NTRWFPYH 229 Query: 246 APSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALL 287 P D++ + A + + SGL S + G+ L Sbjct: 230 KP-DVDITEYWNTIALPGAQKAIVESGLGSTTAHFPGIGKLF 270 >UniRef50_Q53VU9 Putative ATP-dependent RNA helicase n=1 Tax=Thermus thermophilus HB8 RepID=Q53VU9_THET8 Length = 817 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 92/418 (22%), Positives = 159/418 (38%), Gaps = 79/418 (18%) Query: 262 QDASRVLELSGLVSNKRCYEGVHALLDN-GYQPRQLQVLVDALPVAPGLTVIEAPTGSGK 320 ++ R + L + R + A D G +P Q V + ++ APTG+GK Sbjct: 224 REEKRRVRLRPWAAGARKADDPEAFYDRFGLKPTPFQREVFKVAEGDPAHLLLAPTGTGK 283 Query: 321 TETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFN 380 TE A A+ + + + ++F LPT++ + + R ILA R Sbjct: 284 TEAA---AFPALAR--GERLVFVLPTRSLVDDLEGRFRCYLK--------ILAQEEGRPK 330 Query: 381 HLFQSIKSRA----ITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPV-- 434 L R + GQEEA + ++ + + T+D++L Sbjct: 331 ALVVDTGHRQARFRFSPDGQEEA---------TKERHLYHADVILTTLDKLLYRYFGYAE 381 Query: 435 ---KHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQK 491 + F R + R++ + DEVH Y+ ++ + G +++SAT+P + Sbjct: 382 GVKSYTFPRRIHDRRTLFVFDEVHLYEATAWVNFRHLIASLYKAGVRFLVMSATMPGTYR 441 Query: 492 QKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADML 551 ++LL L HP P + + Sbjct: 442 EELLLE----------------------------GTLEHP--------AAKRPSRVLRYM 465 Query: 552 PDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRRE 611 P +E I ++ G +V ++ V A Y+RLK + L+H R RR Sbjct: 466 PQGNPME--IIQSHRGKRVLVVLEEVKEAAELYKRLKGEG-----VFLYHGRLAEGQRR- 517 Query: 612 KENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRH 669 RV + K +L+ T +E +D+D + L+T CP + L QRLGR++R Sbjct: 518 ---RVFGEVKRRDKAQEPYLLITTPAIEVGVDLDAEVLVTTLCPPENLLQRLGRVNRR 572 >UniRef50_A8M9D0 CRISPR-associated helicase Cas3 n=1 Tax=Caldivirga maquilingensis IC-167 RepID=A8M9D0_CALMQ Length = 582 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 85/375 (22%), Positives = 156/375 (41%), Gaps = 57/375 (15%) Query: 311 VIEAPTGSGKTETALAYAWKLIDQQ-IADSVIFALPTQATANAMLTRMEASASHLFSSPN 369 + E PTG GKT TA Y +KL+++ I+D VI LP +A ++ + + + S Sbjct: 30 IAELPTGYGKT-TASPYIYKLVNEYGISDRVIHVLPLRAIIRKLIQDITDEGTWIGS--- 85 Query: 370 LILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFL-GQIGVCTIDQVL 428 LF+ I+ G + Q +++ K+ F + + T+D + Sbjct: 86 ------------LFREIR------LGINDIAYQMGEFVVNVRKEPFFDAKYTLTTLDSFV 127 Query: 429 ISVLPV---------KHRFIRGLGIGRSVLIVDEVH----AYDTYMNGLLEAVLKAQADV 475 ++ + KH FI I S +++DE H A + A + A Sbjct: 128 HNLFKIPITELYRDKKHYFIPLGRIFTSTVLLDEAHIALAAESEKTISTVIASINALLSS 187 Query: 476 GGSVILLSATLPMKQKQKLLDTYGLHTDPVEN-NSAYPLINWRGVNGAQRFDLLAHPEQL 534 +++++ATLP K ++ L + V N A P++ G + + + Sbjct: 188 HVPIVMMTATLPSKYEK-------LIIEKVNNIKKARPIVIRLGKKEEVKSNEITIITVH 240 Query: 535 PPRFSIQPEPI-CLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNT 593 P F + + + + L ++++ + N G +V ++ N + Y+ + + N Sbjct: 241 DPDFENTYSNVKYVHEKVSKLRIIDKAMDEVNNGRRVLIVLNNIRKVINIYREISDRIND 300 Query: 594 QVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQH 653 DI L H++ DR E+R+ N ++L+ T +E +DV FD LIT Sbjct: 301 S-DIALVHSKLIGRDREMYESRI----------NKVKVLIGTSAIEAGVDVSFDTLITTI 349 Query: 654 CPADLLFQRLGRLHR 668 QR+GR+ R Sbjct: 350 DNPMSFIQRIGRICR 364 >UniRef50_A0YUQ7 ATP-dependent RNA helicase, putative n=1 Tax=Lyngbya sp. PCC 8106 RepID=A0YUQ7_9CYAN Length = 776 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 72/277 (25%), Positives = 117/277 (42%), Gaps = 58/277 (20%) Query: 569 QVCLICNLVDVAQVCYQRLKELN-NTQVDIDLFHARFTLNDRREKENRVISN-------- 619 +V +ICN V +Q ++ L++LN N Q I L H+RF DR KE R+ N Sbjct: 127 RVIIICNTVSQSQGIFKDLEDLNENNQFKITLLHSRFIARDRTFKEQRIQGNEEQRIQGI 186 Query: 620 FGKNGKRN-VGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRL------------ 666 F +N + + ILV+TQV+E +++ + + +Q CP + L QR+GR Sbjct: 187 FAENWEDDGYCHILVSTQVIEAGINITCEVMHSQLCPMNSLLQRVGRCARFAGEQGEVYI 246 Query: 667 ----------------------HRHHRKYRPAGFEIPVAT--ILLPDGEGYGRHEHIYSN 702 R+ RKY P EI T IL+ H++I Sbjct: 247 YQTILTQVDEDEWDVKNNDDYPKRNKRKYLPYSEEICEQTWEILINHTNSEQHHKNINFR 306 Query: 703 VRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRF 762 + W Q H E RQ + D+ E + + G DK ++E + Sbjct: 307 IEEDWINQIHTTE-----NILQAEQRQ---NQKDEFERNWEAAIFRG-DKSVASELIRFI 357 Query: 763 KARKVLQWAEEYSL---QDNDETILAVTRDGEMSLPL 796 +R V W E+ + +D++E + V++ S+P+ Sbjct: 358 DSRSVFLWEEKPVIVGGEDSEENTIDVSQLEAFSIPI 394 >UniRef50_C8VZL0 CRISPR-associated helicase Cas3 n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VZL0_DESAS Length = 836 Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 93/398 (23%), Positives = 164/398 (41%), Gaps = 52/398 (13%) Query: 306 APGLTVIEAPTGSGKTETALAYAWKL-----IDQQIADSVIFALPTQATANAMLTRMEAS 360 G I APTG GKT ++L A L + ++ +I A+P ++ + + Sbjct: 282 GTGFFTITAPTGIGKTLSSLQCALCLQERIKVLEKYTPRIIAAIP----FINIIEQNKKE 337 Query: 361 ASHLFSSP-NLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQI 419 +F LI+ H F S+++ + E ++A ++ W G + Sbjct: 338 YEQVFGKELKLIVHHRLGDF-----SVQASSREEISVDQALLEVESWE---------GDV 383 Query: 420 GVCTIDQVLISVLPVKHRFIRGLG-IGRSVLIVDEVHAYDTYMNGLLEAVLKAQAD-VGG 477 + T Q+ S++ +R ++ + S++I+DE A Y L+ AVL+ + +G Sbjct: 384 ILTTFVQLFQSIITGNNRLLKKFNKLACSIVILDEAQAVPEYYMPLIGAVLQKMTEFLGT 443 Query: 478 SVILLSATLPMKQKQKLLDTYGLHTDPVENNS-AYPLINWRGVNGAQRFDLLAHPEQLPP 536 IL++AT P K+L+ L + A PL+ D + E+L Sbjct: 444 RFILMTATQP-----KILEFGNLLLGSSGGKAKAVPLLP----------DFEGYFEKLTR 488 Query: 537 RFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQV- 595 + + + L LE + V ++ N + + Y+ +K+L Q Sbjct: 489 TKFV---SLLKKNRLDTGAFLELFQEKWDGKKSVLIVVNTIKRSIEVYREIKKLLKDQAC 545 Query: 596 DIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCP 655 +I + + + R+ +E VI N + ILV+TQ +E +D+DFD P Sbjct: 546 NIPVCYLSTNIMPRQRRE--VIKNVKDKLENKETVILVSTQTIEAGVDLDFDMAFRDFAP 603 Query: 656 ADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGY 693 D L Q GR++R RK G +PV + L Y Sbjct: 604 IDSLIQTAGRVNREGRK----GEYLPVYIVQLESDNHY 637 >UniRef50_A1VHS3 Metal dependent phosphohydrolase n=3 Tax=Desulfovibrio vulgaris RepID=A1VHS3_DESVV Length = 745 Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 109/488 (22%), Positives = 190/488 (38%), Gaps = 73/488 (14%) Query: 307 PGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFS 366 PGL + PTG GKT +++A+A VI+A+P +++ + S +F Sbjct: 251 PGLFSLTVPTGGGKTLSSMAFALDHAVTHGLRRVIYAIPF----TSIIEQNAKVFSDVFG 306 Query: 367 SPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQ 426 N++ H N R S+ E+ + W + L+ N + + V T Q Sbjct: 307 QDNVLEHHCNYR---------SKDEPEEQGYDKW----RGLAAEN---WDAPVVVTTNVQ 350 Query: 427 VLISVLPVKHRFIRGL-GIGRSVLIVDEVHAYDT-YMNGLLEAVLKAQADVGGSVILLSA 484 S+ + R L I RSV+++DE A T Y+ L A+ + G +V+L +A Sbjct: 351 FFESLFSNRPSRCRKLHNIARSVIVLDEAQAIPTEYLEPCLYALKELVGQYGCTVVLCTA 410 Query: 485 TLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEP 544 T P L + LH +++A P++L ++ Sbjct: 411 TQPAVDDASLPERVRLH---------------------HVREIIADPQRL--YTDLKRTE 447 Query: 545 ICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARF 604 + LA L D + R+ + QV I AQ + L+E FH Sbjct: 448 VTLAGRLTDAALAARL----DGHGQVLCIVGTKPQAQAVFSLLQEREGA------FH--L 495 Query: 605 TLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLG 664 + N E RV+ + + +V+T ++E +DVDF + D + Q G Sbjct: 496 STNMYPEHRRRVLGTIRQRLADRLPCRVVSTSLIEAGVDVDFPVVYRAMAGLDSIAQAAG 555 Query: 665 RLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFP 724 R +R R P +++ + E R + R R Q+ + L A Sbjct: 556 RCNREGRLPEP-------GQVVVYEPEKPPRMPWMQ---RCASRAQETLRTLPEADPLGL 605 Query: 725 DAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETIL 784 +A R++ IYD E+D + + + + FK R++ A ++ D++ T L Sbjct: 606 EAIRRYFGLIYDVQELDRKDIFKRLRGQVDK---DMVFKFREI---ANDFRFIDDEGTAL 659 Query: 785 AVTRDGEM 792 + E+ Sbjct: 660 VIPTGPEV 667 >UniRef50_A5D0R9 Predicted helicases n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D0R9_PELTS Length = 738 Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 118/495 (23%), Positives = 196/495 (39%), Gaps = 84/495 (16%) Query: 307 PGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATA--NAMLTRMEASASHL 364 PG + PTG GKT ++LAYA +IF LP + NA + R + Sbjct: 245 PGFYRLTVPTGGGKTRSSLAYALGHAIFHKKRRIIFVLPYTSIIDQNARVYR------EI 298 Query: 365 FSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTI 424 S ++ H + A+ G EEA L + + L I V T Sbjct: 299 LGSEAVLEYHSQT------------AVPAVGDEEADDPQLLRLQLAEENWDLPVI-VTTT 345 Query: 425 DQVLISVLPVKHRFIRGL-GIGRSVLIVDEVHAYDTYMNGLLEAVLKAQAD-VGGSVILL 482 Q+L S+ K R + I SVLI DE + VLK + G +V+L Sbjct: 346 VQLLESLFSNKPSRCRKIHRIADSVLIFDEAQTLPPLLLKPTLDVLKDLVENYGTTVVLS 405 Query: 483 SATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQP 542 +AT P + L D G+ E P + + F+LL E + + P Sbjct: 406 TATQPAFNSEFLPDVQGM-----EFTEIVP-------DYQKHFELLKRVE-----YCLLP 448 Query: 543 EPICLADMLPDLTMLERMIAAANAGAQ-VCLICNLVDVAQVCYQRLKEL--NNTQVDIDL 599 + L + +L E+++ N + + L+ LV + C+ L + +V +D Sbjct: 449 GQVSLEYLAEELAGHEQVLVIMNTRKEAIRLVDELVRRGRECFHLSTLLCGAHRRVILDE 508 Query: 600 FHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLL 659 R LN R ++ ++ LV+TQVVE +D+DF + P D + Sbjct: 509 VRRRLDLNKRPGPKSPLL--------------LVSTQVVEAGVDLDFPLVYRAVGPLDRI 554 Query: 660 FQRLGRLHRHHRKYRPAGFEIPVATILLPDGEG--YGRHEHIYSNVRVMWRTQQHIEELN 717 Q GR +R R + + + + +GE G ++ + RV+ + E Sbjct: 555 VQAAGRCNREGRA------KSGLVKLFILEGEKAPSGPYKAWFELARVI------LSERG 602 Query: 718 GA-SLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSL 776 GA +L +PD ++++ +++ +G +DK E V AE Y L Sbjct: 603 GAGALNYPDIFKEYFSRLFN--------LLGGNLDKHGVQELRAELNYPAV---AEHYRL 651 Query: 777 QDNDETILAVTRDGE 791 ++D T+ + + GE Sbjct: 652 IESD-TVPVLVKYGE 665 >UniRef50_UPI0001C41C2F CRISPR-associated helicase Cas3 n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41C2F Length = 941 Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 137/611 (22%), Positives = 245/611 (40%), Gaps = 107/611 (17%) Query: 239 TFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQV 298 TF N+ P DIN LR + +LE S ++N AL+D+ Sbjct: 293 TFNLNDICPEDINVLR---------KAMLLESSETLNN--------ALMDDD-------- 327 Query: 299 LVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRME 358 + + PTG GKT T++ A ++ A+ +I+A+P + +E Sbjct: 328 --------KKIFFLNMPTGGGKTNTSMKLALDMVKNTDANRIIYAMP-------FINIIE 372 Query: 359 ASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQ 418 + + S L GN R ++ + S I + EE LS F Sbjct: 373 QNFDVICKSFGLNEEEGNIR--QIYSA--SETIFNKSDEETLEII---LSDD----FFNY 421 Query: 419 IGVCTIDQVLISVL-PV-----KHRFIRGLGIGRSVLIVDEVHAYDTYMN--GLLEAVLK 470 +CT +S+ P+ K+++ R + SV+I+DE+ + N L + + Sbjct: 422 PVICT---TFVSLFNPIIKNNKKYKY-RLNALSNSVIILDEIQSL-PLRNWVSLYFIINE 476 Query: 471 AQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRF--DLL 528 +++SATLP K KL + D N + LIN N + F DL Sbjct: 477 LSEKYNIYFLIMSATLPSFDKLKLENIRD--DDNFLNYNNVSLIN----NPEKYFNHDLF 530 Query: 529 AHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLK 588 + + C D ++ + E N G ++ N + +++ Y +LK Sbjct: 531 SRTNINGGIKKLGINDDCSIDYFLEI-IRENFSQDYNKG---LIVLNTIKSSRLIYDKLK 586 Query: 589 ELNNT-QVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFD 647 + + DIDL ++ N R+ +++ N + IL++TQ +E +DV FD Sbjct: 587 DFSQEYNFDIDLLNSSILPNRRKNIIHKI------NQEDLSNYILISTQSIEAGVDVSFD 640 Query: 648 WLITQHCPADLLFQRLGRLHRHHR---KYRPAGFEIPVATILLPDGEGYGRHEHIYSNVR 704 ++I D + Q GR +R K+ + + V I L D +++IY +V Sbjct: 641 FVIRDFSILDSIEQVRGRCNRSRELNDKFHDSNIKGNVYLINLEDDNS-NLYKYIYKDVE 699 Query: 705 VMWRTQQHIEELNGASLFFPDAYRQWLD--SIYDDAEMDEPEWVGNGMDKFESAECEKRF 762 + R ++ I N D Q+ + + YD+ +D + V + MD + R Sbjct: 700 LKTRIKETINLFNEGFELNDDLNYQYSNILTYYDNVSLDIND-VHDSMD-----QSFLRN 753 Query: 763 KARKVLQWAE-EYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYED-LSHE 820 R ++ W + +YS + I + D + +P LD ++Y+D L+ + Sbjct: 754 DRRNIVFWNKMKYSKIQKKKGIHIILNDLKQYSIFIP----------LDIKIYDDSLNLD 803 Query: 821 QQYEALALNRV 831 + E + LN + Sbjct: 804 KTIEDMDLNEL 814 >UniRef50_C3CTC0 ATP-dependent RNA helicase n=1 Tax=Bacillus thuringiensis Bt407 RepID=C3CTC0_BACTU Length = 696 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 82/360 (22%), Positives = 137/360 (38%), Gaps = 79/360 (21%) Query: 311 VIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNL 370 ++ +P GSGKTE + L+ ++ + LP + A ++ R+ S L S Sbjct: 39 ILLSPCGSGKTEASY-----LLTKRWDRKTTYVLPMKTLATSIQKRLNTYESSLKSGKEW 93 Query: 371 ILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLIS 430 + H S SN V TIDQVL Sbjct: 94 SIQHS--------------------------------SISNDPFLDSYYAVTTIDQVLSG 121 Query: 431 VLPV-KHRFIRGLGIGRSVLIVDEVHAYDTYMN-GLLEAVLKAQADVGGSVILLSATLPM 488 L + + FIRG + +S I DE+ +T L +L + + G ++++AT+P Sbjct: 122 YLGIGRQAFIRGKNVLKSNFIFDEIQLLETNKTLKTLFGMLDSIHENGNQFMIMTATMPT 181 Query: 489 KQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLA 548 + + Y VEN P+I R V + + E L Sbjct: 182 YLMEFMSHRYNAEIIEVEN----PVIENRQVK-------VFYEESL-------------- 216 Query: 549 DMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLND 608 D T +E + + +ICN Y ++++ + + L + + D Sbjct: 217 ----DCTSIESL------KEKQIIICNTQKEQIELYTQIQD----KSRVILLNNKLQQKD 262 Query: 609 RREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHR 668 R + E V FGK N +IL++TQ++E +D+ + + C D L QR GR+ R Sbjct: 263 REQVEADVFKYFGKGSLSN-DKILISTQIIEAGMDISAPTVYSSLCSIDSLIQREGRVAR 321 >UniRef50_C7QY85 CRISPR-associated helicase Cas3 n=1 Tax=Cyanothece sp. PCC 8802 RepID=C7QY85_CYAP0 Length = 914 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 94/421 (22%), Positives = 168/421 (39%), Gaps = 64/421 (15%) Query: 278 RCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTET----ALAYAWKLID 333 + Y+ + N Q + + L + +P +++APTGSGK E +LAY +KLI Sbjct: 289 QLYQKLKGFTPNPMQEKLINALNPEINPSPS-CLLKAPTGSGKLEAILIPSLAYDYKLI- 346 Query: 334 QQIADSVIFALPTQATANAMLTRMEASASHLFSSPN-------LILAHGNSRFNHLFQSI 386 LPT++ R+++ P+ L++ G +++++ Sbjct: 347 --------LVLPTKSLLEDHRQRIDSYLLKFSELPSNQDRDISLVIDTGTKMTRYIYKNG 398 Query: 387 KSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPV---KHRFIRGLG 443 R + + ++ G I + T+D+ + + FI Sbjct: 399 SMRLPENTPR---------------RHLYKGNIILTTLDKFMYRYFSFGDKQKSFIFPYR 443 Query: 444 IGR--SVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQK---LLDTY 498 I + +++ DE H+YD +++KA + G S+IL++ATL K ++ L D Sbjct: 444 IHQDNTLICFDEAHSYDDISFTNFCSLIKALYEAGRSLILMTATLSHKHLERFDYLQDDL 503 Query: 499 GLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPE--QLPPRFSIQPEPICLADMLPDLTM 556 + D +N L + Q+F H E Q S PE A Sbjct: 504 IDYIDDADN--LQKLYKFSQQILKQQFVNQKHFEWIQDVEHNSESPETFHNA-------F 554 Query: 557 LERMIAA--ANAGAQVCLICNLVDVAQVCYQRLKELNNTQVD-----IDLFHARFT--LN 607 +R++ +N+ ++ V A V Y+++K + T D + L+H R + Sbjct: 555 TQRVLNEWQSNSNQRIIATVETVKDAVVIYEKIKSILETNKDSQGRFLFLYHGRISDIPK 614 Query: 608 DRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLH 667 D + ++N ILV T +E D++ LITQ C + L QR GR + Sbjct: 615 DSEFSRTNIYQQIKARDEKNQPYILVTTSAIEVGCDLNSTKLITQFCNPENLIQRGGRCN 674 Query: 668 R 668 R Sbjct: 675 R 675 >UniRef50_UPI0001698E9E CRISPR-associated helicase Cas3 n=2 Tax=Gammaproteobacteria RepID=UPI0001698E9E Length = 271 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/126 (37%), Positives = 64/126 (50%), Gaps = 18/126 (14%) Query: 307 PGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLF- 365 P L ++E TG+GKTE AL A +L+ + A+ + F LPT ATANAM R+ S L+ Sbjct: 5 PQLFILEDVTGAGKTEAALLLAHRLMSRGSANGIYFGLPTMATANAMYDRLGDSYRQLYG 64 Query: 366 --SSPNLILAHGNSRFNHLF-QSIKSRAITEQGQEE----------AWVQCCQWLSQSNK 412 S+P+L+LAH + F QS+ I E E A C QWL+ K Sbjct: 65 EASTPSLVLAHSARNLSTRFRQSL----IPETQHPESSHHRDDPPPASTHCGQWLADHRK 120 Query: 413 KVFLGQ 418 K G+ Sbjct: 121 KALPGR 126 >UniRef50_Q467D2 Putative uncharacterized protein n=1 Tax=Methanosarcina barkeri str. Fusaro RepID=Q467D2_METBF Length = 843 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 9/119 (7%) Query: 556 MLERMIAAANAGAQVCLICNLVDVAQVCYQRL-KELNNTQ----VDIDLFHARFTLNDRR 610 +++ A + + +I N V+ AQ Y++L KE + ++I L H RF R Sbjct: 292 LIQTQYQQAESAPSIVVIVNTVNRAQDLYKKLIKEYQSKSGTDTLEIFLLHGRF----RP 347 Query: 611 EKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRH 669 ++ + +NF +N G+IL++TQV+E +D+ LIT+ P L QR GRL+R+ Sbjct: 348 PEKTEIFNNFKSATNKNKGKILISTQVIEAGVDISAHILITELAPWSSLVQRFGRLNRY 406 >UniRef50_C1TQC9 CRISPR-associated helicase Cas3 n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TQC9_9BACT Length = 712 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 88/368 (23%), Positives = 148/368 (40%), Gaps = 60/368 (16%) Query: 305 VAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHL 364 +PGL + PTG+GKT T L A+++ + S+I+ALP +++ + + A L Sbjct: 197 TSPGLYTLTLPTGAGKTVTGLEIAYEIASRNGYKSIIYALP----FISIIEQNSSVAKEL 252 Query: 365 FSSPNLILAHGNSRFNHLFQSIKSRAITEQGQ-EEAWVQCCQWLSQSNKKVFLGQIGVCT 423 F ++ H Q I + + + W + V L T Sbjct: 253 FGIESVQEDHS--------QMISGKEVPDDDDVYSPWDKMSVLFRYWRSPVIL-----TT 299 Query: 424 IDQVLISVL-PVKHRFIRGLGIGRSVLIVDEVHAYD-TYMNGLLEAVLKAQADVGGSVIL 481 + Q+ S+ P + + + RSV+I+DE + +G+ + + +G IL Sbjct: 300 MVQLWNSIYDPRANSSMDFHRLSRSVVIMDEPQGIPPKFWSGMGKTLDFLSEKLGTYFIL 359 Query: 482 LSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQ 541 ++AT P + G+ P +P N R+ +L ++ P Sbjct: 360 MTATQPQIGE-------GIEISP--KRYHFP-------NVRHRYKVLK--DKFP------ 395 Query: 542 PEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFH 601 D LPDL + E + A +G ++ N A Y LKE + D+ Sbjct: 396 ------LDDLPDL-LFESLPVARGSG---LVVLNTRKSAIRTYNLLKE--RLEGDVYFLS 443 Query: 602 ARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQ 661 A T RR +V+ + L++TQVVE +D+DFDW+ P D + Q Sbjct: 444 AWMTPIHRR----KVLKRIKQAQLSGEPYYLISTQVVEAGVDLDFDWVFRDMGPLDSVVQ 499 Query: 662 RLGRLHRH 669 GR +RH Sbjct: 500 VAGRCNRH 507 >UniRef50_O28405 Putative uncharacterized protein n=1 Tax=Archaeoglobus fulgidus RepID=O28405_ARCFU Length = 546 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 83/367 (22%), Positives = 150/367 (40%), Gaps = 56/367 (15%) Query: 311 VIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNL 370 VIEAPTG GK+ + A + +++ + F L T Sbjct: 42 VIEAPTGYGKSTISATIAAYSLQEELKSIIAFPLRT------------------------ 77 Query: 371 ILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVL-- 428 +L ++F LF + + ++ + + L I +D+ + Sbjct: 78 LLEDQYNKFKGLFGNKLGKRYMHNPDSPYLIKPVTLTTIDTLALTLFGIPPEDLDKAVKY 137 Query: 429 ---ISVLPVKHRFIRGLGIGRSVLIVDEVH--AYDTYMNGLLEAVLKAQADVGGSVILLS 483 S + H + S +++DEVH A T L A++ A D ++L+S Sbjct: 138 WDGTSSGSLGHYLFSQASVALSNIVLDEVHLLADSTKSLNFLFALMHAAIDNDQKLVLMS 197 Query: 484 ATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPE 543 AT+P K+++ E N ++ + + FD E+ ++ I Sbjct: 198 ATIPEALKKRI----------KEFNPDVCMVEFN-----ESFDRKFVEERRKKKYRINL- 241 Query: 544 PICLADMLPDLTMLER-MIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHA 602 I LA + LER ++ + +++ ++ N + A Y +KE + L H+ Sbjct: 242 -IALAS-VEKFGSLERILLEGSKKFSKITVVFNTIGDAVYFYNNIKE-KIPEFKKLLLHS 298 Query: 603 RFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQR 662 RF+ DR EK+ +++ K+ K ++V TQV+E +D+ + IT+ PA L QR Sbjct: 299 RFSEMDR-EKKAELLAEMKKSEKF----VIVTTQVIEAGVDISSNLFITEIAPASSLIQR 353 Query: 663 LGRLHRH 669 LGR R+ Sbjct: 354 LGRFLRY 360 >UniRef50_A3XIA0 Predicted helicase n=1 Tax=Leeuwenhoekiella blandensis MED217 RepID=A3XIA0_9FLAO Length = 418 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 73/152 (48%), Gaps = 22/152 (14%) Query: 314 APTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILA 373 APTGSGKTE AL +A D + +I+ LPT+ T+NA+ +R+ + F L Sbjct: 271 APTGSGKTEAALIWASSKKDWE---RIIYLLPTRVTSNAIYSRL----TDYFGEEYTQLI 323 Query: 374 HGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLP 433 H ++R Q IK + Q++ + K F I +CTIDQ+L Sbjct: 324 HSSAR-----QYIKEQFDNSYDQKKYF----------RDKSFFKNINICTIDQLLTLGFN 368 Query: 434 VKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLL 465 + ++ + + +I+DE+H Y Y GL+ Sbjct: 369 LGFWEVKTFHLLNARIIIDEIHLYSPYTLGLI 400 >UniRef50_C1XWQ3 CRISPR-associated helicase Cas3/CRISPR-associated HD domain protein n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XWQ3_9DEIN Length = 831 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 70/285 (24%), Positives = 120/285 (42%), Gaps = 37/285 (12%) Query: 391 ITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVL--ISVLPVKHRFIRGLGIGRSV 448 + QG EA+ Q ++F ++GV TIDQ L + P+ G + ++ Sbjct: 61 LERQGFGEAYRPAIHHGQQQESEIFAERVGVTTIDQYLAGFAGAPLSFSSRSGHAVAGAI 120 Query: 449 L----IVDEVHAYDTYMN-GLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTD 503 + + DEVH LL AVL+ + G +++ATLP + L + GL + Sbjct: 121 VASYSVFDEVHLLGPERGLPLLYAVLQQRKRWGLLSTVMTATLPKSVRTFLAEQVGL--E 178 Query: 504 PVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAA 563 VE + A + + +G +R L + P ER++ Sbjct: 179 AVELSPA----DVQARDGWRRVTLSLEEVERPA---------------------ERVLEE 213 Query: 564 ANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKN 623 A +V N VD A Y++L+ + ++ L H+ F + R+ E R++ FG+ Sbjct: 214 FKAHGRVIAFVNTVDAAVELYRQLQARLGPE-ELFLAHSNFAPSHRKAVEERLLEVFGRG 272 Query: 624 GKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHR 668 + V TQV E +++ ++++ P D L QR GR R Sbjct: 273 STARA--VCVLTQVGEAGINISAPVVLSELAPVDSLIQRAGRCAR 315 >UniRef50_C0QHV8 Putative CRISPR-associated helicase Cas3 (ATP-dependent DNA helicase) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QHV8_DESAH Length = 753 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 91/380 (23%), Positives = 157/380 (41%), Gaps = 72/380 (18%) Query: 309 LTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSP 368 + +IEAPTG GKT +AL A ++ + +I ALP M + + Sbjct: 239 IYIIEAPTGIGKTFSALHLALEICRDKNKKRIINALP-----------MTSIIDQTYEEY 287 Query: 369 NLILAHGNS-RFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLG----QIGVCT 423 L++ + +F+HL +S KS +E G E+ Q N + + ++ V T Sbjct: 288 GLVINDDDLLKFHHLTRS-KSYGSSE-GDEKKETNSLG--RQQNDFIAMSWSSDKVIVTT 343 Query: 424 IDQVLISVLPVKHR-FIRGLGIGRSVLIVDEVHAY-DTYMNGLLEAVLKAQADVGGSVIL 481 +Q+ + K+R I+ + SV+I+DE+ A + L++ +L ++ Sbjct: 344 FNQLFNAFYSNKNRDLIKFWTLRDSVVILDEIQAVPRILIQDLIKTILYLSEHFNIDFVI 403 Query: 482 LSATLPM-------KQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQL 534 +SAT+P ++ +LLD D N+ Y L +N PE L Sbjct: 404 MSATIPAIKNFIPSEKIAELLDNRYFSMDF---NNRYSLKIDTDINT---------PESL 451 Query: 535 PPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQ 594 +I E N + +C++ + ++ + EL ++ Sbjct: 452 WSAITINYE---------------------NVNSLLCVL----NTKKLSLETYNELEHSI 486 Query: 595 VDIDLF--HARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQ 652 +LF + F R E +I N K N +LV+TQVVE +D+DFD+ I + Sbjct: 487 DSSELFFLNTNFIPKHRSE----IIRNIRNRLKNNQKTLLVSTQVVEAGVDLDFDFGIRE 542 Query: 653 HCPADLLFQRLGRLHRHHRK 672 P + Q GR++R K Sbjct: 543 FAPLYSMIQTAGRVNREGTK 562 >UniRef50_A7HLK7 CRISPR-associated helicase Cas3 n=5 Tax=Bacteria RepID=A7HLK7_FERNB Length = 800 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 100/408 (24%), Positives = 162/408 (39%), Gaps = 91/408 (22%) Query: 312 IEAPTGSGKTETALAYAWKLIDQQIADS-VIFALP----------TQATANAMLTRMEAS 360 I APTG+GKT A KL + + ++++LP T + +L E Sbjct: 291 ITAPTGTGKTFAGFFAAVKLRELLGGNRRIVYSLPFTSIIDQNYETIYQIHKVLKNFERE 350 Query: 361 ASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIG 420 SS +I H + ++ K + + E W I Sbjct: 351 -----SSKYIIKHHSLVKPEYIENEYKYDLLESELLIENWS---------------SGII 390 Query: 421 VCTIDQVLISVLPVKHRFIRGL-GIGRSVLIVDEVHAYDTYMNGLLEAVL-KAQADVGGS 478 V T Q+ +++ ++R ++ L I S++I+DE+ A D + L+E VL KA Sbjct: 391 VTTFVQLFETLISTRNRMLKKLINIKGSIIILDEIQAIDISLLPLIEYVLEKATELYDLR 450 Query: 479 VILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRF 538 +IL++AT P K L + ++NN Y F + LP Sbjct: 451 IILMTATKPYIFKDSL--------ELLDNNEKY-------------FSIFNRTTLLPNLS 489 Query: 539 SIQPEPIC--LADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVD 596 S + E L + L D + L ++CN ++ + Y+ LK +N Sbjct: 490 SRKLEDFIKELKENLQDKSYL--------------IVCNTINSSLEVYENLKGINRP--- 532 Query: 597 IDLFHARFTL--NDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHC 654 +F+ L R EK ++ K K ILV+TQVVE +D+DFD +I Sbjct: 533 --VFYLSTNLLPIHRLEKIKKIKELLSKGEKI----ILVSTQVVEAGVDIDFDVVIRDIG 586 Query: 655 PADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGE------GYGRH 696 P D + Q GR +R++ K + L+P+ GYGR+ Sbjct: 587 PLDSIIQCAGRCNRNNLKENGTVY----VYSLIPNESNNDLTYGYGRY 630 >UniRef50_C5RQB0 CRISPR-associated helicase Cas3 n=1 Tax=Clostridium cellulovorans 743B RepID=C5RQB0_CLOCL Length = 705 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 91/384 (23%), Positives = 143/384 (37%), Gaps = 76/384 (19%) Query: 292 QPRQLQVLV-DALPVAPGLTVIEAPTGSGKTETALAYA---WKLIDQQIADSVIFALPTQ 347 +PR++Q + + L ++ + GSGKTE YA W I IF P + Sbjct: 13 KPREIQKEIKNVLKNKKENVLVISGCGSGKTEVG-HYALLNWNGIRS------IFVEPMK 65 Query: 348 ATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWL 407 A ++ R+ + +N + + I G EE Sbjct: 66 TLATSIQERL-------------------NEYNKILNINEKWTIQHSGIEE--------- 97 Query: 408 SQSNKKVFLGQIGVCTIDQVLISVLPV-KHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLE 466 K + V TIDQVL L + + FIRG I +S + DEV + LL Sbjct: 98 ----DKYLENKFCVTTIDQVLSGWLGIGRQSFIRGKNIVQSNFVFDEVQLFQP-DKALLT 152 Query: 467 AV--LKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQR 524 + L + G ++++AT+P LL+ Y + Sbjct: 153 TINFLDSINSQGNKFLIMTATMPKYLIDFLLERYNMKL---------------------- 190 Query: 525 FDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCY 584 + A+ E + R I D L + E I N AQ + N ++ C Sbjct: 191 --IEAYEETIADR-EIYVNYSSKVDYLQINSRTESQIVICNTQAQQEEVYNNIEDKSRCI 247 Query: 585 QRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDV 644 +L + D ++ L D E + FGK K+N +IL+AT +VE +D+ Sbjct: 248 ILNSKL--LKYDRSKIESKNLLEDDVS-EKSLYKYFGKYAKKN-NKILIATSIVEAGVDI 303 Query: 645 DFDWLITQHCPADLLFQRLGRLHR 668 ++L + CP D QR GR R Sbjct: 304 SANYLYSYACPIDNFIQRCGRCAR 327 >UniRef50_A8TI35 CRISPR-associated helicase Cas3 n=1 Tax=Methanococcus voltae A3 RepID=A8TI35_METVO Length = 523 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 82/309 (26%), Positives = 124/309 (40%), Gaps = 79/309 (25%) Query: 418 QIGVCTIDQVLISVLPVKHRF-IRGLG-------IGRSVLIVDEVHAYDTYMNGLLEAVL 469 Q VCT Q+L RF +RG G S++I DE+HA+ + GL + Sbjct: 78 QFRVCTPHQLL--------RFSLRGRGWEFFLSEFQNSIIIYDEIHAFQPKLAGLTISTA 129 Query: 470 KAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLA 529 K +G V +SAT P K+K+ EN IN + A R L Sbjct: 130 KLLTQMGAKVAFMSATFPEFLKEKI----------KENIPDIEEINLNEDDPADRKILDK 179 Query: 530 HPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCY----- 584 ++ + ++L +L M ++ N ++ +I N V AQ Y Sbjct: 180 KRHKIN---------VVSGNILDNLDM-SYILELLNDNKKILIIANTVRTAQKIYEMLDK 229 Query: 585 ------QRLKELNNTQVD---------------------------IDLFHARFTLNDRRE 611 Q+ EL N + L H+RF DR++ Sbjct: 230 YLYENSQKYYELTNKANKANKSNKSNKYSKNNKNNNKNYDEGNDILMLLHSRFNKKDRKD 289 Query: 612 KENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHR 671 KE R+I + + I+V+TQV+E SLD+D+D + T+ P D L QR GR++R Sbjct: 290 KEKRLIIE----DRTLLPDIVVSTQVIEVSLDIDYDVMFTEPAPMDALAQRFGRVNRKGE 345 Query: 672 KYRPAGFEI 680 + PA I Sbjct: 346 R-EPANIFI 353 >UniRef50_C7P9K5 CRISPR-associated helicase Cas3 n=2 Tax=Methanocaldococcus RepID=C7P9K5_METFA Length = 549 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 101/475 (21%), Positives = 189/475 (39%), Gaps = 105/475 (22%) Query: 290 GYQPRQL----QVLVDALPVAPGLTVIEAPTGSGKTETALAYA-WKLIDQQIADSVIFAL 344 G++P++ +VL D +++APTG GKT + A + L + + D VI L Sbjct: 17 GFKPKRRPLIERVLKDIESSEKPFFIVKAPTGYGKTTISYTLALYSLYNAERFDKVIHIL 76 Query: 345 PTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCC 404 P ++ ++ + SA LF F K ++E+ Sbjct: 77 PMRS----IVEDLSMSAKELFD----------------FSRAKMMGVSEE---------- 106 Query: 405 QWLSQSNKKVF-LGQIGVCTIDQVLISVLPVKHR--------------FIRGLGIGRSVL 449 VF L + TID + VL + + F I S+L Sbjct: 107 ---------VFHLFPLNFTTIDTFIWDVLKLNTKKFSRIKDGKEFGYDFFTQASILNSML 157 Query: 450 IVDEVHAY--DTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVEN 507 I DE H D + + VLK + +++L+ATL K ++L Y + P + Sbjct: 158 IFDEAHFILEDDKLKSVFLCVLKFLLENDVPILILTATLS-KGYEELFKRYAI---PKKY 213 Query: 508 N-SAYPLINWRGVNGAQRF-----DLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMI 561 + Y L + G + + L + + S+ E + + L + +R I Sbjct: 214 DFKIYELSDENGKSSKSHIFVEDKEFLEREMKKDFKISVFNEN-SVNNYLKYVEERKRNI 272 Query: 562 AAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVD-IDLFHARFTLNDRREKENRVISNF 620 N+ + C+ + D+A L ++ D I L H + T N R++ ++ Sbjct: 273 VVVNSPKK-CV--KIYDIA---------LQDSGFDNILLIHGKMTYNHRKKIVEKI---- 316 Query: 621 GKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEI 680 ++ K ++++TQV+E +D+ D ++T+ P + L QR GR+ R++ + Sbjct: 317 -RDLKNEKEFLIISTQVIEAGVDISSDIMVTEIAPPNSLIQRFGRVARYNEREGK----- 370 Query: 681 PVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIY 735 +L DG+ Y + + + WR ++E F Y++W+D ++ Sbjct: 371 --IIVLKSDGKPYNKEK-----IEKTWR---YLESNVDIHPRFSKTYQEWIDEVH 415 >UniRef50_B9MPU0 CRISPR-associated helicase Cas3 n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MPU0_ANATD Length = 807 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 88/404 (21%), Positives = 164/404 (40%), Gaps = 60/404 (14%) Query: 312 IEAPTGSGKTETALAYAWKLID-QQIADSVIFALPTQATANAMLTRMEASASHLFSSPNL 370 I PTG+GKT + A KL + + + +I+ALP +++ + +LF + Sbjct: 290 ITTPTGTGKTLAGVFAAVKLKEILKKSGRIIYALP----FTSIIDQNYDVVKNLFET--- 342 Query: 371 ILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNK---KVFLGQ----IGVCT 423 I G +R +L + + +G+E A + ++ K + F+ V T Sbjct: 343 IEDFGKNRDRYLLKHHHLTDVEFRGKEGALKEITDEITVFEKVASECFIENWTSGFVVTT 402 Query: 424 IDQVLISVLPVKHRFIRGL-GIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADV-GGSVIL 481 Q+L +++ ++R ++ SVL++DE+ A D + L+E VL+ + +IL Sbjct: 403 FVQLLETLISNRNRMLKKFHAFYDSVLLLDEIQAIDVELLPLVEEVLRKLTQLFRCKIIL 462 Query: 482 LSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQ 541 ++AT P+ + D E L + + R L+ H L + Sbjct: 463 MTATKPL-----------IFEDACE------LAGFCDYSIFNRTKLMYHHSDLKVAEFVD 505 Query: 542 PEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFH 601 D+ D ++ N ++ + Y +K N ++ Sbjct: 506 ---FFSEDIYED-------------EKSFLIVANTINQSHQIYNGIKN-NLKNKEVIYLS 548 Query: 602 ARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQ 661 A DR++ +I K + I+V+TQV+E +D+DFD +I P D + Q Sbjct: 549 ASLVPKDRKD----IIKKIEKMLESGAKPIVVSTQVIEAGVDIDFDCVIRDIAPIDSIIQ 604 Query: 662 RLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRV 705 GR +RH+ K + V + + D G + +Y N + Sbjct: 605 CAGRCNRHNEKSQG-----NVLVVNMKDESGITFAKRVYGNTAI 643 >UniRef50_A3DLC7 CRISPR-associated helicase, Cas3 family n=1 Tax=Staphylothermus marinus F1 RepID=A3DLC7_STAMF Length = 577 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 97/478 (20%), Positives = 184/478 (38%), Gaps = 112/478 (23%) Query: 305 VAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHL 364 V ++++EAPTG GKT L+ A+ L + + + P + L + L Sbjct: 31 VGSNISIVEAPTGYGKT--TLSQAFTLYNLIFGFKSVISYPLRTLLEDQLNKFRMLGEKL 88 Query: 365 FSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTI 424 G F + SR + G E++ ++ + + TI Sbjct: 89 ----------GLKDF------VGSRYM---GHHESYY-------------YVKPVTLTTI 116 Query: 425 DQVLISVLPVK----HRFIRGLGIGRSV------------------LIVDEVHAYDTYMN 462 D + + + ++ R+++ L IG S+ +++DE H + Sbjct: 117 DTLSMCIFGLEPSELDRYLKALYIGESITSTLGHYLFSKATVLLSNIVLDETHLLADSIK 176 Query: 463 GL--LEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVN 520 L L A++ + ++L SATLP +L Y G+N Sbjct: 177 SLNFLAALVIIAHNNDLKLLLESATLPDAFIHELKRVYS------------------GIN 218 Query: 521 GAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLT-----------MLERMIAAANAGAQ 569 ++ E + P F + E + M P ++E ++ G + Sbjct: 219 ------VVKFSEDMDPEFVEEREKKEIDYMKPVEVGEDKYEKIMEWLMEAEKNLSDQGLR 272 Query: 570 VCLICNLVDVAQVCYQRLKELNN----TQVDIDLFHARFTLNDRREKENRV--ISNF--- 620 ++ N V A Y LK+ + + ++ L H+R+ DR ++ +++ +SN Sbjct: 273 ALVVFNTVREAVEFYNYLKKYSGKIGVSNDNVILIHSRYKEKDRGDRVDKIRELSNMLKE 332 Query: 621 ---GKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAG 677 K +N+ I+VATQV+E +DV + IT PA+ L QR+GR R+ G Sbjct: 333 AIKNKQDTKNIQYIIVATQVIEAGVDVSSNVFITDIAPANSLIQRMGRFLRY------PG 386 Query: 678 FEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIY 735 + I D + + +Y + ++ RT + + P YR+ ++++Y Sbjct: 387 EKYGYLRIWYEDLKQFKNKYKVYDH-SLVQRTLDQLIVFKTFNPHLPSKYRELINNVY 443 >UniRef50_Q2NH80 Predicted helicase n=1 Tax=Methanosphaera stadtmanae DSM 3091 RepID=Q2NH80_METST Length = 795 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 82/404 (20%), Positives = 172/404 (42%), Gaps = 51/404 (12%) Query: 280 YEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLI-----DQ 334 YEG++ + + YQ +L ++ + + + I PTGSGKT +A ++A KL ++ Sbjct: 244 YEGINEIREEAYQ--ELTSSLENIDLNNKIYSITLPTGSGKTMSAFSFALKLRRKIKNEK 301 Query: 335 QIADSVIFALP--TQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAIT 392 I +I+ +P + N + R + S+ +S LI + S +++ + I Sbjct: 302 NIIPRIIYTMPFLSIVDQNEEVLRKILNYSNYDTSDILIKHNSTSELSYVVNKNGTTKIQ 361 Query: 393 EQGQEEAW--VQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGL-GIGRSVL 449 + E+A V + L + + +I + T Q+ +++ K++ +R I S++ Sbjct: 362 DDPTEKAELDVDKAEMLLEG----WYSEIVITTFYQLAYTLISNKNKALRKFHNISNSII 417 Query: 450 IVDEVHAYDTYMNGLLEAVLKAQADVGGS-VILLSATLPMKQKQKLLDTYGLHTDPVENN 508 IVDE + N + + L + +I ++AT P K E++ Sbjct: 418 IVDEAQSIPAKYNQIFKTALDYLSKKFNVWIIFMTATQPEIFK--------------ESD 463 Query: 509 SAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGA 568 PLI N + FD + P+ + D + +I N Sbjct: 464 GILPLI----TNEQKYFDCFDR-----VNYVFHHTPMTIDDFKEKIV---DIIQENNKD- 510 Query: 569 QVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNV 628 + ++ N + + ++ ++ + + I+L++ + +EK R+ K + N Sbjct: 511 -IMIVLNTISSSTEIFEYIQGYFDEE-GIELYYLSGNI-IPKEKLERI----KKIKESNN 563 Query: 629 GRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRK 672 +++V TQ++E +++D D + D + Q GR +R+ +K Sbjct: 564 RKVIVTTQLIEAGVNIDVDIIYRDFAVMDSIIQTAGRCNRNDKK 607 >UniRef50_C4IBN7 Crispr-associated helicase Cas3 n=1 Tax=Clostridium butyricum E4 str. BoNT E BL5262 RepID=C4IBN7_CLOBU Length = 871 Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 86/379 (22%), Positives = 153/379 (40%), Gaps = 45/379 (11%) Query: 305 VAPGLTVIEAPTGSGKTETALAYAWKLI-DQQIADSVIFALPTQATANAMLTRMEASASH 363 + + +EAPTGSGK+ TA ++KL + + + + P L + + + Sbjct: 331 IDENIYFLEAPTGSGKSNTAFNLSFKLFEEDKNLKKIYYVYPFNTLVEQNLNILNKTFGN 390 Query: 364 LFSSPNLILAHGNSRFNHLFQSIKSRAITE-----QGQEEAWVQCCQWLSQSNKKVFLGQ 418 ++ + I N ++ + E G E+ + + N++ FL Sbjct: 391 NKAAMDKIAV-----INSIYPIKEDNKYVEYDSGKNGDEKDFSYKYYEKALLNRQ-FLNY 444 Query: 419 IGVCTIDQVLISVL--PVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADV- 475 + T L + + K + SV+++DE+ +Y + + + LK A + Sbjct: 445 PVILTTHVSLFNTMFGENKEDAFAFHQLANSVIVLDEIQSYKNTIWTEIISFLKGFAKIL 504 Query: 476 GGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLP 535 VI++SATLP L+ V NS LI R ++P Q Sbjct: 505 NIKVIIMSATLP-----------DLNMLAVNTNSVCSLI-------KDREKYFSNP-QFK 545 Query: 536 PRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDV--AQVCYQRLKELNNT 593 R + + I + L DL E ++ ++ ++ L++ Q Y+ K LN Sbjct: 546 DRVIVNYDLIDSGNPLQDL--YEHVLKNSSRNKKI-----LIEFIKKQSAYEFFKMLNEE 598 Query: 594 QVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQH 653 ++D + T +D + +R+I N G ILVATQV+E +D+D D Sbjct: 599 ELDATVL--LMTGDDNSIERDRIIKELSSNESEENGVILVATQVIEAGVDIDMDIGYKDI 656 Query: 654 CPADLLFQRLGRLHRHHRK 672 D Q +GR++R RK Sbjct: 657 SKLDSDEQFMGRINRSCRK 675 >UniRef50_C3MWK3 CRISPR-associated helicase Cas3 n=5 Tax=Sulfolobus RepID=C3MWK3_SULIM Length = 548 Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 17/112 (15%) Query: 561 IAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNF 620 + N ++ +I N VD A Y++L++L+ L H+RF + DR EK Sbjct: 261 VVKRNKDKKIMVIVNTVDKAITIYEKLRDLSPC-----LIHSRFKIGDRDEK-------- 307 Query: 621 GKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRK 672 R I++ATQV+E +++ + +I++ P + QR+GRL R ++K Sbjct: 308 ----LRKECNIIIATQVIEVGVNISSEVMISEQAPITSIVQRVGRLLRDNKK 355 >UniRef50_A2BKI6 Predicted helicase n=1 Tax=Hyperthermus butylicus DSM 5456 RepID=A2BKI6_HYPBU Length = 502 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 11/126 (8%) Query: 564 ANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKN 623 A AG +V N V A Y+ L+ + + ++ L H R DR E ++ Sbjct: 177 AEAGRKVLYAVNTVGSALKTYRELRAMLGEE-NVVLVHGRLAQRDREEAIKKI------- 228 Query: 624 GKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVA 683 +++VATQVVE +DVD + L+T+ L QR GRL R R + P+ Sbjct: 229 ---ERAKVVVATQVVEAGVDVDAEVLVTEAAAPSSLAQRAGRLCRSQRTAEKCRSDPPIV 285 Query: 684 TILLPD 689 I +P+ Sbjct: 286 AIYVPN 291 >UniRef50_A8ABL2 CRISPR-associated helicase Cas3 n=1 Tax=Ignicoccus hospitalis KIN4/I RepID=A8ABL2_IGNH4 Length = 543 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 22/159 (13%) Query: 537 RFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVD 596 R+ + E + L + L + L+R+ A++G +V ++ N V A + L+ + D Sbjct: 224 RWETEAEGVTLLNYLQ--SELKRVEDEASSG-KVLIVANTVKEAIKAAELLRPYFGS--D 278 Query: 597 IDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPA 656 + L H R + D++ N++ +++V+TQV+E +DVD WLIT+ P Sbjct: 279 LVLVHGRLSEEDKKNSVNKI----------EKAKVVVSTQVIEAGVDVDATWLITEAAPV 328 Query: 657 DLLFQRLGRLHRHHRKYRPAGFEIPVATILLPD-GEGYG 694 L QR GRL R ++ T+L P G+ YG Sbjct: 329 SSLAQRAGRLCRSR------DCDVAKVTVLAPSKGDPYG 361 >UniRef50_A4XFN3 CRISPR-associated helicase Cas3 n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XFN3_CALS8 Length = 714 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 88/404 (21%), Positives = 167/404 (41%), Gaps = 60/404 (14%) Query: 312 IEAPTGSGKTETALAYAWKLID-QQIADSVIFALPTQATANAMLTRMEASASHLFSSPNL 370 I PTG+GKT + A KL + + + +I+ALP + + +E +LF + Sbjct: 197 ITTPTGTGKTLAGVFAALKLKEILKKSGRIIYALPFTSIIDQNYHVVE----NLFEA--- 249 Query: 371 ILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNK---KVFLGQ----IGVCT 423 I +R +L + + +G+E A + ++ K + F+ V T Sbjct: 250 IEDFEKNRDRYLLKHHHLTDVEFKGKEGALKEITDEITVFEKVASECFIENWTSGFVVTT 309 Query: 424 IDQVLISVLPVKHRFIRGL-GIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADV-GGSVIL 481 Q+L +++ ++R ++ SVL++DE+ A D + L+E VL+ + +IL Sbjct: 310 FVQLLETLISNRNRMLKKFHTFYDSVLLLDEIQAIDVELLPLVEEVLRKLTQLFRCKIIL 369 Query: 482 LSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQ 541 ++AT P+ + D E L + + R L+ H L Sbjct: 370 MTATKPL-----------IFEDACE------LAGFCDYSIFNRTKLMYHHSDLK------ 406 Query: 542 PEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFH 601 +A+ + D + E ++ N ++ + Y +K N ++ Sbjct: 407 -----VAEFV-DFFLQE----VYEDEKSFLIVANTINQSHQIYNGIKN-NLKNKEVIYLS 455 Query: 602 ARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQ 661 A DR++ +I K + I+V+TQV+E +D+DFD ++ P D + Q Sbjct: 456 ASLVPKDRKD----IIKKIEKMLESGAKPIVVSTQVIEAGVDIDFDCVVRDIAPIDSIIQ 511 Query: 662 RLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRV 705 GR +RH+ K + + V + + D G + +Y N + Sbjct: 512 CAGRCNRHNEKSQGS-----VLVVNMKDESGITFAKRVYGNTAI 550 >UniRef50_C8X3A9 CRISPR-associated helicase Cas3 n=2 Tax=Desulfohalobiaceae RepID=C8X3A9_DESRD Length = 780 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 6/104 (5%) Query: 565 NAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNG 624 AG + ++ N V AQ +Q LK+ + + D+ L H+RF D+ +++S + G Sbjct: 264 KAGTRTLVVLNTVKRAQALFQHLKK-HKPKCDLVLIHSRFRAQDKAHAIEKLLSPVNEQG 322 Query: 625 KRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHR 668 I V TQV+E +DV LIT P L QR GR +R Sbjct: 323 T-----ICVTTQVIEAGVDVSSSTLITDLAPWASLIQRFGRCNR 361 >UniRef50_A8UUT3 Predicted helicase n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UUT3_9AQUI Length = 773 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 96/441 (21%), Positives = 177/441 (40%), Gaps = 93/441 (21%) Query: 297 QVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADS-----VIFALPTQATAN 351 +VL + + L I PTG GKT T A+A KL + ++ +I++LP + + Sbjct: 258 EVLEHKIDTSQRLYSITLPTGMGKTLTGFAFALKLRKTIVKETGTVPRIIYSLPFLSIID 317 Query: 352 AMLTRMEASASHLFS--SPNLILAHGNSRFNHL--------FQSIKSRAITEQGQEEAWV 401 +E F S L+L H +HL F+ SR +TE Sbjct: 318 QNAEVLERVLEEEFKEVSGRLLLKH-----HHLSQAGDFGEFEFSVSRVLTEG------- 365 Query: 402 QCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLG-IGRSVLIVDEVHAYDT- 459 W S+ + + T Q +++ ++ R + S++I+DEV + T Sbjct: 366 ----WNSE---------VVITTFVQFFEALISCRNSTSRRFNKLANSIVILDEVQSLPTK 412 Query: 460 YMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGV 519 Y + L E + + +G I ++AT P Y + + Sbjct: 413 YWHLLREMIKEVSESLGTYFIFMTATQP-----------------------YLVEECVEL 449 Query: 520 NGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDV 579 +R+ L +++ F ++ + I D D + I N + Sbjct: 450 ASKERY--LKDLDRITAHFDLEEKTI---DEFLDGIEFRK-------DKTYLFIANTIAS 497 Query: 580 AQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVE 639 ++ Y++L+E + DI +R+E+ R+ K+ R++V+TQ+VE Sbjct: 498 SKELYEKLRE--RLEEDICYLSTSVVPYERKERIGRI--------KKGDYRVVVSTQLVE 547 Query: 640 QSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHI 699 +D+DFD + P D L Q GR +R+ + R F + + L D +G+ + + Sbjct: 548 AGVDIDFDVVYRDFAPLDSLNQSAGRCNRNMARGR-GEFRV----VRLVDEKGHPFTKGV 602 Query: 700 YSNVRVMWRTQQHIEELNGAS 720 Y V ++ TQ +E+++ S Sbjct: 603 YDAV-LLHITQTLLEDIDSLS 622 >UniRef50_B0JKW2 Putative ATP-dependent RNA helicase n=1 Tax=Microcystis aeruginosa NIES-843 RepID=B0JKW2_MICAN Length = 907 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 89/399 (22%), Positives = 158/399 (39%), Gaps = 46/399 (11%) Query: 293 PRQLQVLVDALPVAPGLTVIEAPTGSGKTETAL-AYAWKLIDQQIADSVIFALPTQATAN 351 P Q QV + +++APTG GK E + + L ++ +I LP ++ Sbjct: 300 PMQEQVFQTMVENKHPAFILKAPTGVGKFEAIIIPFLAMLSTKEDRPRLIIPLPARSLLE 359 Query: 352 AMLTRMEA-----SASHLFSSPNLILAHGN--SRFNHLFQSIKSRAITEQGQEEAWVQCC 404 R + S H +L++ G +R+ +L IKS Sbjct: 360 DQKQRCDKYLKQFSLLHKGREVSLVIDTGTEMNRYVYLDGEIKSS--------------- 404 Query: 405 QWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHR---FIRGLGI--GRSVLIVDEVHAYDT 459 + S + ++ G I + TID+ + + FI I G +++ DE H YD Sbjct: 405 ---NNSRRHLYKGDIILTTIDKFIYRYFGYGDKQKSFIFPYRIYHGNTLICFDEAHTYDD 461 Query: 460 YMNGLLEAVLKAQADVGGSVILLSATLPMKQKQK---LLDTYGLHTDPVENNSAYPLINW 516 +++KA + G S++L++ATL ++ L D + D +N L N+ Sbjct: 462 ISFTNFCSLVKALYEAGRSLVLMTATLSQNHLERFDYLADNMIDYIDVQDNLEK--LNNF 519 Query: 517 RGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNL 576 Q + L E + EP L L + + E +N ++ + Sbjct: 520 YQQILKQDYSNLKQFEWVDDIVYDVKEPTNLQQKLTSIALAE---WNSNPSHRIIVSVET 576 Query: 577 VDVAQVCYQRLKELNNTQVD-----IDLFHARFTLNDRREKENR--VISNFGKNGKRNVG 629 V A Y+++K+ N + + L+H R + + +R + + + + Sbjct: 577 VKDAIAIYEKIKQKLNIKSSGQNEFLFLYHGRLSDIPKTSHYSRTNLYKRLKERDENDQA 636 Query: 630 RILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHR 668 ILV T +E D++ LITQ C + L QR GR +R Sbjct: 637 YILVTTSAIEVGCDLNSTRLITQLCNPESLIQRAGRCNR 675 >UniRef50_Q8ZZV0 Helicase, probable n=1 Tax=Pyrobaculum aerophilum RepID=Q8ZZV0_PYRAE Length = 609 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/104 (39%), Positives = 48/104 (46%), Gaps = 14/104 (13%) Query: 569 QVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNV 628 + LI N VD A Y+ L+ N L H R TL DR E R S Sbjct: 277 KALLIFNTVDRAVRAYRMLRGEYNAV----LLHGRLTLGDRSEAVMRAKS---------- 322 Query: 629 GRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRK 672 I+VATQVVE +D+D D LIT P L QR GR+ R K Sbjct: 323 AEIVVATQVVEAGVDIDSDLLITDIAPFPNLIQRFGRVARREIK 366 >UniRef50_A3ZP40 Putative uncharacterized protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZP40_9PLAN Length = 872 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 6/102 (5%) Query: 569 QVCLICNLVDVAQVCYQRLKEL--NNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKR 626 + ++CN VD A+ + L + N + + L H+RF DR +++R+ N Sbjct: 271 RTLIVCNTVDRARAIHAALTDKLDYNAEETLVLLHSRFRPPDRARQQDRLKDKLDPN--- 327 Query: 627 NVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHR 668 +G+I+VATQVVE +D+ T+ P + QRLGRL+R Sbjct: 328 -IGQIIVATQVVEAGVDLSSAIQWTEVAPLPSIVQRLGRLNR 368 >UniRef50_A8DJZ2 DEAD/DEAH box helicase domain protein n=1 Tax=Candidatus Chloracidobacterium thermophilum RepID=A8DJZ2_9BACT Length = 940 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 7/108 (6%) Query: 566 AGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGK 625 AG +ICN V++AQ ++ ++L L +RF DR + E R++ K Sbjct: 295 AGKLTLVICNTVELAQDVFRVFRKLGVEHTV--LLTSRFRGEDRSQHEQRLMEFDAKRKT 352 Query: 626 RNV-----GRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHR 668 N+ G I V+TQV+E +D+ L T+ P + QRLGRL+R Sbjct: 353 GNLPPNDPGLICVSTQVIEAGIDISAHRLFTELAPWPSMLQRLGRLNR 400 >UniRef50_C8WTR1 CRISPR-associated helicase Cas3 n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WTR1_ALIAD Length = 873 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 11/101 (10%) Query: 570 VCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRR--EKENRVISNFGKNGKRN 627 ++ N V+ AQ +Q L+++ + DI L H +F DR +E R +S+ +R Sbjct: 273 ALIVLNRVNRAQAVFQALRQVMPDE-DIRLVHGQFRGRDRAWLAEEARTLSD-----RRA 326 Query: 628 VGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHR 668 ILVATQVVE +D+D ++T+ P L QR GRL+R Sbjct: 327 ---ILVATQVVEAGMDLDASLMVTELAPWTSLVQRFGRLNR 364 >UniRef50_B8GLG5 Putative uncharacterized protein n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GLG5_THISH Length = 828 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/114 (34%), Positives = 56/114 (49%), Gaps = 6/114 (5%) Query: 556 MLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENR 615 + ER+I A G ++ N V+ AQ + LKE + D L HARF +RR E Sbjct: 265 LAERVIQAHVPGTTTLVVLNTVERAQGLARALKERTEDR-DPLLVHARFRARERRLLEQA 323 Query: 616 VISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRH 669 + + G RI+VATQ VE +D+ L T+ P + QR GR +R+ Sbjct: 324 LGTQVPPEG-----RIVVATQAVEAGVDMTSRTLFTELAPWSSMVQRFGRCNRY 372 >UniRef50_UPI0000F51713 CRISPR-associated helicase Cas3 n=1 Tax=Ferroplasma acidarmanus fer1 RepID=UPI0000F51713 Length = 803 Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 94/424 (22%), Positives = 173/424 (40%), Gaps = 72/424 (16%) Query: 283 VHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADS--- 339 ++ + +N Y+ + V + + I +PTG+GKT + L A+ + ++ ++ Sbjct: 265 INKIRNNFYESVKKNV--QNIDLNDHFFTITSPTGTGKTISGLYTAFSIRNKLFKNTGNI 322 Query: 340 --VIFALP--TQATANAMLTR--MEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITE 393 +I+ LP T N R +E + + I+ H +HL SI S I + Sbjct: 323 FRIIYTLPFTTIVDQNYDTGRNILETCSGFKNNDERYIIKH-----HHL--SILSGKIDD 375 Query: 394 Q--GQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGL-GIGRSVLI 450 + +E + W S+ I T Q+ ++ K++ ++ I S++I Sbjct: 376 EELSADEVLMLTEDWDSE---------IIFTTFVQLFSALAGYKNKNLKKYYRIINSIVI 426 Query: 451 VDEVHAYDTYMNGLLEAVLKAQAD-VGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNS 509 +DE+ A D + ++ A IL+SATLP + NNS Sbjct: 427 LDEIQAIDIAKWPQIRYLMNYYAKKFNIYFILMSATLP----------------ELVNNS 470 Query: 510 AYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQ 569 G + +RF+ L + L + P + + M + A Sbjct: 471 I-----ELGGDYQKRFEELNR---------VNMHINILERLTPKEIVKKYMYHSETAK-- 514 Query: 570 VCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVG 629 + N ++ + + LKE N D++ ++ + ++K+ VI N K+ K N Sbjct: 515 -LFVFNTINTSIEAFNYLKE--NVSNDVNTYYLSSNIVPIKKKD--VIDNINKDIKNNKK 569 Query: 630 RILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPD 689 I+VATQ+ E +D+ FD +I P D L Q GR++R+ R + + +P+ Sbjct: 570 IIVVATQIFEAGVDISFDMVIRDIAPIDSLIQSSGRVNRNSFNTRGNMYIVNC----VPE 625 Query: 690 GEGY 693 GY Sbjct: 626 KNGY 629 >UniRef50_C2BS05 Possible CRISPR-associated protein n=1 Tax=Mobiluncus curtisii ATCC 43063 RepID=C2BS05_9ACTO Length = 435 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 94/351 (26%), Positives = 137/351 (39%), Gaps = 56/351 (15%) Query: 4 FKYICHYWGKSSKSLTKGNDIHL-LIYHCLDVAAVADCWWDQSV--VLQNTFCRNEMLSK 60 ++ +C K+ + + HL L H +D A VA WD V VL+ T R L++ Sbjct: 10 WEEMCSPQAKALWAKSGDERAHLSLPQHLIDAACVAQWLWDNWVCDVLKATLARLWCLNE 69 Query: 61 QRVKAWLLFFIALHDIGKFDIRFQY----KSAESWL--KLNPATPSLNGPSTQMCR-KFN 113 V+ F+ HD+GK + FQ + +WL L A SL+ P + F Sbjct: 70 SEVRTLYCFYAGTHDVGKATVTFQRQIENRPDAAWLLPPLEQAGLSLDWPRGEGSNVSFP 129 Query: 114 HG-AAGLYWFNQDSLSEQSLGDFFS-FFDAAPHPYESWFPWVEAVTGHHGF-----ILHS 166 HG A+GL + L EQ + F A P HHGF L Sbjct: 130 HGTASGL--LLRKWLEEQGICKFLRVVLSAVPD-------------AHHGFTSNPMTLRL 174 Query: 167 QDQDKSRWEMPASLASYAAQDKQAREEWIS-VLEALFLTPAGLSINDIPPDCS-SLLAGF 224 ++ + E ++ D A I+ VLE L ++P + L+ G Sbjct: 175 REDGIKKRETQFDTIAFQLLDGMAEITAIAPVLERL------QDSGEVPTAPALQLMTGM 228 Query: 225 CSLADWLGSWTTTNTFLFNEDAP--SDINALRTYFQD----RQQDASRVLELSGLVSNKR 278 +ADW+ S + F + P ++ Y Q R QD S +L L Sbjct: 229 VVMADWIAS--NEDAFPYEPVLPQVERVSRAMDYIQLPAPWRPQDISD--DLPELFRKTF 284 Query: 279 CYEGVHALLDNGYQPRQLQVLVDALPVA-PGLTVIEAPTGSGKTETALAYA 328 + D +P Q + A+ P L +IEAPTG GKTE LA A Sbjct: 285 AWG-----TDITLRPVQRAAVEAAMDAPDPTLMIIEAPTGEGKTEAGLAAA 330 >UniRef50_A7NF51 CRISPR-associated helicase Cas3 n=1 Tax=Roseiflexus castenholzii DSM 13941 RepID=A7NF51_ROSCS Length = 859 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 103/400 (25%), Positives = 152/400 (38%), Gaps = 74/400 (18%) Query: 310 TVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPN 369 V++APTGSGKT ALA I+ F LP A L +S P Sbjct: 20 VVLQAPTGSGKTRAALA---PFIE------AFFDLPDDAFPKQCL----------YSVPM 60 Query: 370 LILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLI 429 +LA S+F ++++ R E+ A Q + +G + T+DQ L Sbjct: 61 RVLA---SQFYREYRTLAER--YERIHRRALDVRIQTGERPEDPELVGDLVFATLDQTLS 115 Query: 430 SVLPVKHRFIRG---LGIGR---SVLIVDEVHAYDTYMNGLLEAVLKAQADVG--GSVIL 481 S L V + G L +G S L+ DE H + +A L+ VG +L Sbjct: 116 SALGVPYSLSTGRANLNVGAVLGSYLVFDEFHLFPPEAT---QATLQLLRLVGRLAPFLL 172 Query: 482 LSATLPMKQKQKLLDTYGLHTDP------------VENNSA-YPLINWRGVNGAQRFD-- 526 ++AT Q +L++ G D +E P R Q D Sbjct: 173 MTATF----SQTMLESIGKLLDAEVVVVPPDEVASIETRQGQRPRKQRRFEVADQALDAK 228 Query: 527 --LLAHPEQLPPRFSIQPEPICLADML------------PDLTMLERMIAAANAGAQVCL 572 L AH + + I L + L P L + + +A A Sbjct: 229 AVLAAHGRRSLAVCNTVDRAIALYEQLRQAGCRPAPVSDPTLAPIYQALAQARGEEWDRA 288 Query: 573 ICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGR-- 630 + V Q+ +RL E + + L H+RF R+ KE + + + G G Sbjct: 289 VAQGV---QILRERLAEGGEDKPWVMLLHSRFERPHRQLKEALLQALWNPQGLEAGGDPS 345 Query: 631 -ILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRH 669 I+VATQVVE LD+ L T+ PA + QR GR R+ Sbjct: 346 LIVVATQVVEVGLDISAQTLHTEIAPAASVLQRAGRCARY 385 >UniRef50_C3RBZ9 Crispr-associated helicase cas3 n=7 Tax=Bacteroidales RepID=C3RBZ9_9BACE Length = 741 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 90/386 (23%), Positives = 151/386 (39%), Gaps = 66/386 (17%) Query: 308 GLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSS 367 G + PTG GKT ++L +A K + +I A+P +++ + +F Sbjct: 249 GFYSLTVPTGGGKTLSSLLWAMKHAVSHSMNRIIIAIPY----TSIIVQTAGLLKEIFGE 304 Query: 368 PNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQV 427 N++ H N F+ IK E+ +E+A + W N + V T Q+ Sbjct: 305 ENVLEHHSN--FDP--DDIKD----EENREKAKLATENW----NYPII-----VTTNVQL 347 Query: 428 LISVLPVKHRFIRGL-GIGRSVLIVDEVHAYDT-YMNGLLEAVLKAQADVGGSVILLSAT 485 S+ K R L + S+L++DEV T ++ +++A+ Q G SV+ +A+ Sbjct: 348 FESMFSNKTSDCRKLHNMANSILVLDEVQMLPTGFLQPIVDALKAYQEMFGISVLFTTAS 407 Query: 486 LPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPI 545 P+ GL G N F + H ++ I PE Sbjct: 408 QPV--------LSGL---------------IEGTNPKADFKGIEHIKE------IIPEEF 438 Query: 546 CLADMLPDLTM--------LERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDI 597 L D L + + + + A + +V I N A+ Y RL N V + Sbjct: 439 ALHDQLRRVKLAIDDTGRTYDEIAAKVSEYNKVLCIVNTRKDAKELYDRLP---NDGVKL 495 Query: 598 DLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPAD 657 L +R + I K+G + + R+ +ATQ+VE +D+DF + Q D Sbjct: 496 HL--SRMMCPAHLHETIGKIKTLLKDGLQPIVRV-IATQLVEAGVDIDFPVVFRQEAGLD 552 Query: 658 LLFQRLGRLHRHHRKYRPAGFEIPVA 683 + Q GR +R R F +A Sbjct: 553 SVLQAAGRCNREGRSAMGHTFVFSLA 578 >UniRef50_A4YFV0 CRISPR-associated helicase, Cas3 family n=1 Tax=Metallosphaera sedula DSM 5348 RepID=A4YFV0_METS5 Length = 492 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 91/405 (22%), Positives = 165/405 (40%), Gaps = 111/405 (27%) Query: 290 GYQPRQ-LQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIA---DSVIFALP 345 G++PR+ ++ + + + ++ APTG GKT +L YA L + D VI LP Sbjct: 16 GFEPRKGIEETLSKIEEGKAV-ILTAPTGYGKT--SLTYALGLASLRGNGHFDRVIHVLP 72 Query: 346 TQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQ 405 ++ + +++E + L N ++ + F+ Sbjct: 73 LRSIVQDLTSKLE-NFMRLAGYSNTVVGAYDMDFH------------------------- 106 Query: 406 WLSQSNKKVFLGQIGVCTIDQVLISV--LPVKH--RFIRGLG---------IGRSVLIVD 452 + FL ++ V T+D ++++ LPV R ++G+G I SV++ D Sbjct: 107 -----DTPYFLRKVNVTTLDSFVLNMFKLPVSEITRGMKGMGTHYEVPRGAIYSSVVVFD 161 Query: 453 EVHAY--DTYMNGLLEAVLKAQADVGG---SVILLSATLP--MKQKQKLLDTYGLHTDPV 505 E H + D + L +V+ + +G ++++ATLP ++ K + V Sbjct: 162 EFHLFSDDGGKDKSLTSVIASLRGLGAMQVPFVIMTATLPGSLRDLIKEELEDVVEVVEV 221 Query: 506 ENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPE-PICLADMLPDLTMLERMIAAA 564 ++N F I+ + + D L D L+R Sbjct: 222 KDN-----------------------------FKIERDVSVDFVDEL-DFNKLDR----- 246 Query: 565 NAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNG 624 + ++ N A YQ K+ + V L H++F+ DRR K + + KN Sbjct: 247 ----RTLVVMNTRKGAITAYQEAKKAGLSPV---LIHSKFSAMDRRRKVDEI-----KNA 294 Query: 625 KRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRH 669 K ++++TQV+E +DV FD L T+ P L QR GR+ R+ Sbjct: 295 K-----LVISTQVIEAGIDVSFDVLYTEAAPLPNLVQRAGRVARY 334 >UniRef50_A6LJX0 CRISPR-associated helicase Cas3 n=1 Tax=Thermosipho melanesiensis BI429 RepID=A6LJX0_THEM4 Length = 651 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 92/425 (21%), Positives = 180/425 (42%), Gaps = 75/425 (17%) Query: 312 IEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLI 371 IE PTG GKT +L +L++ + V + +P + +E + + I Sbjct: 294 IEIPTGGGKTNISLRLISRLLENK--KKVFYVIP-------FINIIEQNFEYF---SKFI 341 Query: 372 LAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISV 431 +R++H + ++ ++ +E+ + Q L + VF +G D + Sbjct: 342 PKEHITRYDHKYLNVTD----DENKEKTF---TQMLFLNFPFVFSTHVGFF--DMFFRNG 392 Query: 432 LPVKHRFIRGLGIGRSVLIVDEVHAYD-TYMNGLLEAVLKAQADVGGSVILLSATLPMKQ 490 F + + SV+++DEV AY+ + N L + ++I++SATLP Sbjct: 393 KSDNFNFYQ---LANSVVVLDEVQAYNPKFWNTLSNLFYYLSKYLNTTIIIMSATLP--D 447 Query: 491 KQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADM 550 K +D G+ DL P+ + + + + L + Sbjct: 448 FTKFVD-----------------------KGSFVEDL--SPDVVEHKIFNRVNTLFLKE- 481 Query: 551 LPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRR 610 + T E+++ N +V ++ N V + Y+ L++ +++ +++ TL D R Sbjct: 482 --NHTFEEKVLEEINESKKVLIVVNTVKKSYEIYENLED----KINGEIYLLNSTLLDIR 535 Query: 611 EKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHH 670 +KE + ++ K+ + ILV+TQ +E +D+DFD D + Q +GR++R+ Sbjct: 536 KKE---LIDYIKSYDKEKPLILVSTQSIEAGVDLDFDVGFRAFSILDSIIQTMGRVNRNA 592 Query: 671 RKYRPAGFEIPVATILLPDGEGYGRHEHIY-SNVRVMWRTQQHIEELNGASLFFPDAYRQ 729 R R AT+ L D G + IY S+VR +++ + SL D Y Sbjct: 593 RLSR--------ATLYLFDD---GMWKKIYGSDVRKKI-LEENFSKFKNGSLTLKDFYML 640 Query: 730 WLDSI 734 ++++ Sbjct: 641 TIENL 645 >UniRef50_Q6ARW0 Putative uncharacterized protein n=1 Tax=Desulfotalea psychrophila RepID=Q6ARW0_DESPS Length = 753 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 10/108 (9%) Query: 564 ANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKN 623 A+ V ++CN A+ + +L + L R D+ E N+ + + Sbjct: 239 ADVKGVVAVVCNTTKHARAIFAKLPG------EKILLTGRVRPADKDEILNQYLPQM-LS 291 Query: 624 GKRNVGR---ILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHR 668 G R GR +VATQ +E D+DFD L+TQ+ P D L QR GRL R Sbjct: 292 GSRGRGRQPLFVVATQTIEVGADLDFDALVTQNAPIDALQQRFGRLDR 339 >UniRef50_D0MKL2 CRISPR-associated helicase Cas3, Anaes-subtype n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MKL2_RHOM4 Length = 933 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 3/150 (2%) Query: 560 MIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISN 619 +I A + +I N V A+ ++ L+ N + ++ L R DR + + Sbjct: 281 LIEEAPDARIIGVIVNRVHRARKVFRLLRGQGNGRWEVLLLTGRIRPLDRDRLLQQWLDY 340 Query: 620 FGKNGKRNVGR---ILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPA 676 + +R V I+VATQ +E D+DFD ++T+ D L QRLGRL+R R+ R Sbjct: 341 LKADPERPVSDRPLIVVATQTIEVGADLDFDVMVTEVAALDALLQRLGRLNRLGRRKRAL 400 Query: 677 GFEIPVATILLPDGEGYGRHEHIYSNVRVM 706 + + L E + + S R++ Sbjct: 401 CYVVASEEQLKKKHEDFVYGSALASTARLL 430 >UniRef50_D1BYL3 CRISPR-associated helicase Cas3, Anaes-subtype n=1 Tax=Xylanimonas cellulosilytica DSM 15894 RepID=D1BYL3_XYLCX Length = 1209 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 66/236 (27%), Positives = 106/236 (44%), Gaps = 44/236 (18%) Query: 443 GIGRSVLIVDEVHAYDTYMNGLL-EAVLKAQAD-VG----GSVILLSATLPMKQKQKLLD 496 GI R VL DE H D + +L + L+AQA VG G ++LL A+LP ++ Sbjct: 190 GIDRLVLF-DEPHLSDPAIQTILSQQELQAQAGPVGDVPLGQLVLLGASLPPHRR----- 243 Query: 497 TYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQL---PPRFSIQPEPICLADMLPD 553 + SA+ G++ A R H +L P R + P D+ Sbjct: 244 ---------DQGSAH------GISDADRSH--EHAGKLLGAPRRLVVNPTKDTDKDIRSA 286 Query: 554 LTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKE 613 L + A A +V + CN V +AQ + L+ + L +RF DR + Sbjct: 287 L-----VTTAQAAAGKVLVFCNTVRMAQDVHADLERAASGSAL--LVTSRFRPADRTRLD 339 Query: 614 NRVIS-NFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHR 668 + +++ ++G R +VATQ +E +DV ++T+ CP L QR+GR++R Sbjct: 340 SAIVTWENDEDGPR----FVVATQTLEAGVDVSAGTVVTEPCPWPALQQRVGRVNR 391 >UniRef50_C9RCY3 CRISPR-associated helicase Cas3 n=2 Tax=Thermoanaerobacteraceae RepID=C9RCY3_AMMDK Length = 821 Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 90/390 (23%), Positives = 158/390 (40%), Gaps = 73/390 (18%) Query: 304 PVAPGLTVIEAPTGSGKTETALAYAWKLIDQ-----QIADSVIFALPTQA----TANAML 354 P++ + APTGSGKT T + A L + + +I+ALP + T + Sbjct: 293 PLSQRFFTLTAPTGSGKTLTVINAALILRRRLQEAYGFSPRIIYALPFTSIIDQTYQVLY 352 Query: 355 TRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQ--EEAWVQCCQWLSQSNK 412 ME + S+P++ L + +HL + E + +EA + W S Sbjct: 353 ELMEETLPGFASAPSVYLL----KHHHLAEISYKDPEDEDPRRFDEAMLLIESWQS---- 404 Query: 413 KVFLGQIGVCTIDQVLISVLPVKHRFIRGL-GIGRSVLIVDEVHAYDTYMNGLLEAVLK- 470 ++ V T Q+L + + ++R ++ +GRS++I+DEV L+ VLK Sbjct: 405 -----EVVVTTFVQLLHTFIGYRNRMLKKFCHLGRSIIIMDEVQNIPVEYWPLVTEVLKR 459 Query: 471 AQADVGGSVILLSATLPM-KQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLA 529 A ++ +IL++AT P + + L+ G +P + + +++ R LL Sbjct: 460 AAEELDLRLILMTATRPEWFEPGEALELAG---EPEDIERYFKMLD--------RVRLLV 508 Query: 530 HPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQV-------CLICNLVDVAQV 582 P Q R+ AA A+ ++ N + + Sbjct: 509 EPGQY------------------------RVAEAAELFARRYDPSRSHLVVLNTIRNSVD 544 Query: 583 CYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSL 642 Y LK+L + + REK + G++ V LV+TQVVE + Sbjct: 545 FYHYLKDLLPEGTPLYYLSTNIVPAE-REKRIEALRTALHRGEKPV---LVSTQVVEAGV 600 Query: 643 DVDFDWLITQHCPADLLFQRLGRLHRHHRK 672 D+DFD P D + Q GR +R+ ++ Sbjct: 601 DLDFDVAWRDIGPVDAVVQVAGRCNRNFKR 630 >UniRef50_B0M915 Putative uncharacterized protein n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0M915_9FIRM Length = 855 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 84/370 (22%), Positives = 155/370 (41%), Gaps = 53/370 (14%) Query: 312 IEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLI 371 +EAPTGSGK+ A+ +++L+ Q IF + N ++ + S +F ++ Sbjct: 330 VEAPTGSGKSNLAVNLSFQLMKQNPGIGKIFYV---YPFNTLIEQNLESMEKIFGGSKVM 386 Query: 372 --LAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLI 429 +A NS K + Q +EA + + FL + T L Sbjct: 387 EDIAVVNSMKPIPMDRAKRKTDELQYYQEALLN----------RQFLNYPMILTTHVSLF 436 Query: 430 SVLPVKHRFIRGLG---IGRSVLIVDEVHAYDTYMNGLLEAVLKAQAD-VGGSVILLSAT 485 + R G + SVL++DE+ +Y + + LK A + +I++SAT Sbjct: 437 DTM-FGRRKESTFGFHQLANSVLVLDEIQSYRNSIWTEIILFLKEFASFLNMKIIIMSAT 495 Query: 486 LPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHP---EQLPPRFSIQP 542 LP + + +EN A PLI R ++F +HP ++ +S+ Sbjct: 496 LP---------NLDVLSPGLEN--AVPLIRNR-----EKF--YSHPVFKNRVHADYSLMK 537 Query: 543 EPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHA 602 + + D+L + ++ N ++ + + A +Q L+E ++ +L Sbjct: 538 KEFTMEDLL------DHVLKQQNLKKKILVEFIKKESAYTFFQMLQEDGRLELPTELLTG 591 Query: 603 RFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQR 662 ++ +R++ V+ GK+ G ILV+TQV+E D+D D D Q Sbjct: 592 DQSILERKQ----VLKKIDTAGKQ--GMILVSTQVIEAGADIDMDIGYKNWSKLDSEEQF 645 Query: 663 LGRLHRHHRK 672 +GR++R +K Sbjct: 646 MGRINRSCKK 655 >UniRef50_C5CFB0 CRISPR-associated helicase Cas3 n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CFB0_KOSOT Length = 776 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 83/377 (22%), Positives = 143/377 (37%), Gaps = 65/377 (17%) Query: 308 GLTVIEAPTGSGKTET----ALAYAWKLIDQQIADSVIFALPTQATAN---AMLTRMEAS 360 + +++ TG GKT T L KL + +I+ LP + + + + Sbjct: 267 SIGILKGRTGIGKTLTLFSLGLKLREKLTNSDYVPRIIYCLPFLSIIDQTYEVAVELFEK 326 Query: 361 ASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEE--AWVQCCQWLSQSNKKVFLGQ 418 F + N +L H I+ +G E+ A + W S+ Sbjct: 327 TGRSFPTENQVLQQ------HHLSDIEYSTKEGEGYEKYLADLLINSWNSE--------- 371 Query: 419 IGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGS 478 I + T S+ K R ++ I S++++DE+ A L +LK AD GG+ Sbjct: 372 IIITTFVSFFHSIFTNK-RNMKFFRIPGSIVLLDEIQAIPPKYWELTGKILKLLADYGGT 430 Query: 479 VILLS-ATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPR 537 + S AT+P K G H + G RFDL E + Sbjct: 431 KFVFSTATMP-----KCFGISGKHL-------------YTGEIPLDRFDLHYIGEVTFEK 472 Query: 538 FSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDI 597 F ++ + E + A + + ++ N + A+ + + E VD Sbjct: 473 FK-------------EIFLREVVEKARDESKGLMVVLNTIGCAKAVLEEISEF----VDK 515 Query: 598 DLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPAD 657 + + ++NR+ G R+LV TQ+VE +D+DFD+ I P D Sbjct: 516 KYLYYLSSEVPPIVRKNRIEKLKNLKG----FRVLVTTQLVEAGVDLDFDYCIRDIGPLD 571 Query: 658 LLFQRLGRLHRHHRKYR 674 + Q GR++R +RK + Sbjct: 572 SVVQVAGRVNRSNRKKK 588 >UniRef50_UPI0001746122 hypothetical protein VspiD_22760 n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001746122 Length = 809 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 10/105 (9%) Query: 567 GAQVCLICNLVDVAQVCYQRL--KELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNG 624 G ++ N V A+ Y L K L +I L H+RF DR E+ ++V+ FGK Sbjct: 282 GTLTLVVVNRVIRARKLYAALRDKRLGVKSENIALIHSRFRPVDR-ERHSKVL--FGKGD 338 Query: 625 KRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRH 669 RI++ATQ VE +DV LI++ P + QR+GR +R+ Sbjct: 339 -----RIVIATQAVEAGVDVSARLLISELAPWSSIVQRIGRCNRY 378 >UniRef50_UPI0001B50180 CRISPR-associated helicase Cas3 family protein protein n=1 Tax=Streptomyces sp. C RepID=UPI0001B50180 Length = 1010 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 5/100 (5%) Query: 572 LICNLVDVAQVCYQRLKELNNTQVDIDLFHARF-TLNDRREKENRVISNF--GKNGKRNV 628 ++ N + A+ Y+ L + ++ VD+ L R TL+ R + +++ G + +R+ Sbjct: 305 VVANTIRAARATYRLLSQRDD--VDVVLLTGRSRTLDRERLLASPLVTELLTGVSAQRDK 362 Query: 629 GRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHR 668 I VATQ VE +D+ F LIT++ L QRLGRL R Sbjct: 363 PLIAVATQTVEVGIDISFAGLITENAALAALIQRLGRLDR 402 >UniRef50_B8I204 Metal dependent phosphohydrolase n=1 Tax=Clostridium cellulolyticum H10 RepID=B8I204_CLOCE Length = 728 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/201 (24%), Positives = 86/201 (42%), Gaps = 24/201 (11%) Query: 289 NGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQA 348 N Y+ + L ++ + L + PTG GKT ++LA+A + + D +I+ +P Sbjct: 211 NRYRKKILDACIEKAKLKRNLFNLTVPTGGGKTLSSLAFAVNHLIKNSMDRIIYVIP--- 267 Query: 349 TANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLS 408 +++ + ++F N++ H N F+ SIK++ + E W Sbjct: 268 -YTSIIEQTAREFKNIFGEENVLEHHSNFDFDDDENSIKNKM---RLSSENW-------- 315 Query: 409 QSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGL-GIGRSVLIVDEVHAYDT-YMNGLLE 466 FL V T Q S+ K R L I S++I DEV Y+ +E Sbjct: 316 ---DMPFL----VTTNVQFFESLFSHKSSRCRKLHNIANSIIIFDEVQILPIDYLKPCIE 368 Query: 467 AVLKAQADVGGSVILLSATLP 487 A+ + + +V++ SAT P Sbjct: 369 AIKQLVLNFNSTVVMCSATQP 389 >UniRef50_C3X8E5 Putative uncharacterized protein n=2 Tax=Proteobacteria RepID=C3X8E5_OXAFO Length = 984 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 66/263 (25%), Positives = 110/263 (41%), Gaps = 44/263 (16%) Query: 412 KKVFLGQIGVCTIDQVLISVLPVKHRFIRGL-GIGRSVLIVDEVHAY-DTYMNGLLEAVL 469 K F G I V TIDQ+L S+ V H + L + ++ DE H Y + LL A L Sbjct: 493 KDYFSGDIIVTTIDQILGSI--VTHTKVNSLLPFMNAHVVFDEYHEYIGMEIFNLLFAEL 550 Query: 470 ----KAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRF 525 K ++ + +L+SAT +K+LD + Sbjct: 551 VANKKMRSKGNKNTLLVSATPHYLYLEKVLDI------------------------DTTY 586 Query: 526 DLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQ 585 D + P P ++ I+ +D L A A +I N AQ+ + Sbjct: 587 DAVEMPSFNPSQYKIEFVEFDESDKL------NSPFYQAYAD-NTFIISNTAQTAQLGFI 639 Query: 586 RLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVD 645 ++ + LFH++F +D++ N V +F KNG R +L + +V+ SL++ Sbjct: 640 YRQKTEKSV----LFHSKFKRSDKKYWFNEVYESFRKNGTRKFD-VLRSGPIVQASLNIS 694 Query: 646 FDWLITQHCPADLLFQRLGRLHR 668 D ++++ + + QRLGRL R Sbjct: 695 CDHMVSEMSHPENILQRLGRLDR 717 >UniRef50_B1GZL6 CRISPR-associated protein Cas3 n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GZL6_UNCTG Length = 814 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 86/378 (22%), Positives = 149/378 (39%), Gaps = 64/378 (16%) Query: 307 PGLTVIEAPTGSGKTETALAYAWKLIDQQIA--DSVIFALP----TQATANAMLTRMEAS 360 G +E PTG GKT + +A ++ + A D +I+ +P + AN + +EA Sbjct: 281 KGCYKLEVPTGGGKTLASFRFAVEMAKKCNAGIDRIIYCIPFTTIIEQNANTIRKIVEAD 340 Query: 361 ASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIG 420 S N++L H S S+ ++G+EE + ++ + + Sbjct: 341 KS---DKGNIVLEH---------HSNISQTSYDKGKEEEFNPTELYMQSWDIPIIF---- 384 Query: 421 VCTIDQVLISVLPVKHRFIRGL-GIGRSVLIVDEVHAYDTYMNGLLEAVLKAQAD-VGGS 478 T Q+L + + R L + S++I DEV + L + D + Sbjct: 385 -TTNVQILEVLFGRRTSDTRKLHQLANSIIIFDEVQSLPIKCVHLFNNAINYLVDFCNTT 443 Query: 479 VILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRF 538 V+L +AT P LLD ++ + +I R FD L R Sbjct: 444 VVLCTATQP------LLDNVDPERGCLKLSEKPDIIQNRNC----VFDSL-------KRV 486 Query: 539 SIQPEPICLADMLPDLTMLERMIAA-----ANAGAQVCLICNLVDVAQVCYQRLKELNNT 593 ++PE + D+ IA+ N +ICN A+ ++ +K Sbjct: 487 EVKPE-------IKDVDYTSEEIASKAAEFVNDNENCLVICNTTKSAKEIFEIIK----G 535 Query: 594 QVDIDLFH--ARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLIT 651 +VD +++H AR R+ + K K V V+TQV+E +D+DF+ I Sbjct: 536 RVDYEVYHLSARMMPIHRKIVLRAIKRKLNKRKKIAV----VSTQVIEAGIDIDFNCGIR 591 Query: 652 QHCPADLLFQRLGRLHRH 669 D + Q GR++R+ Sbjct: 592 ALAGLDSIIQAAGRINRN 609 >UniRef50_Q1Q100 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q100_9BACT Length = 841 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 80/381 (20%), Positives = 151/381 (39%), Gaps = 76/381 (19%) Query: 312 IEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLI 371 + PTG GKT +L A K+++++ + + P + +E S L I Sbjct: 322 LNIPTGGGKTNISLRLALKIMEKREIKKLFYVFP-------FINLIEQSYEVL---GKFI 371 Query: 372 LAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISV 431 +R + SR I E+ + + + VF + ++ ++ + Sbjct: 372 GLRNMARLD-------SRFIDSSDNEDNY--------EDDTSVFANYVDNLFFNKPVLFL 416 Query: 432 LPVKH--RFIRG--------LGIGRSVLIVDEVHAY-DT------YMNGLLEAVLKAQAD 474 VK F R I SV+I+DE+ AY DT YM ++ L Sbjct: 417 SHVKFFDLFFRNDKNSNYNFYQIANSVVIIDEIQAYKDTVWTEVAYMFDVIGRFLNTH-- 474 Query: 475 VGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQL 534 I++SATLP + +L H E+ S+ + H ++ Sbjct: 475 ----FIVMSATLP---RLDILTNSTFHQIIPEDTSS---------------KVFKH--EV 510 Query: 535 PPRFSIQPEPICLADMLPDLTMLERM---IAAANAGAQVCLICNLVDVAQVCYQRLKELN 591 R I P+ + D +++ I N ++ ++ N V + Y ++++ Sbjct: 511 FNRTRITPDKKLKINESNDKNRFDKLVNRIKKLNKENKILIVLNTVKDSFDIYIKIQKEK 570 Query: 592 NTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLIT 651 + +++ T+ + R+K+ + K+ R + +LV+TQ VE +D+DFD Sbjct: 571 TISEEFEVYLLNSTIIEARKKDILIAC---KDANRKI--VLVSTQSVEAGVDIDFDVGFR 625 Query: 652 QHCPADLLFQRLGRLHRHHRK 672 + P D + Q GR++R+ K Sbjct: 626 AYAPFDSIVQVAGRINRNSGK 646 >UniRef50_C0EDE1 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EDE1_9CLOT Length = 796 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 97/404 (24%), Positives = 159/404 (39%), Gaps = 68/404 (16%) Query: 301 DALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEAS 360 +A G+ + PTG GKT + L YA + V F +P +L+ ++ + Sbjct: 259 EAASRGGGIFRLNVPTGGGKTLSGLRYALARAAEG-QQRVFFVIP-------LLSILDQN 310 Query: 361 ASHL---FSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLG 417 A + P LIL H + N + + + I E + E ++ W + Sbjct: 311 AKEIRKYLEDPKLILEHHS---NVMREKPDKKEIEELDETELVLE--NWRAP-------- 357 Query: 418 QIGVCTIDQVLISVLPVKHRFIRGL-GIGRSVLIVDEVHAYDTYMNGLLEAVLKAQAD-V 475 + + T+ Q+L ++ K IR + + SV+++DEV + M L A Sbjct: 358 -VVITTLVQLLNTLFDGKTSCIRRMTALCGSVIVIDEVQSVPRKMLSQFNLALNFLATFC 416 Query: 476 GGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLP 535 G +V+L SAT P LD TD G+ A++ +L+ + E L Sbjct: 417 GATVVLCSATQPC------LD----QTD-------------HGLRYAEQPELVPYDETLW 453 Query: 536 PRFSIQPEPICLADMLPDLTMLERMIAAA----NAGAQVCLICNLVDVAQVCYQRLKELN 591 F L D+ LT+ E + A A V +ICN A+ R+ E Sbjct: 454 RVFRRTE----LTDLRKSLTV-EELAAFALERQQEAGSVLVICNTKSEAK----RIFEAI 504 Query: 592 NTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLIT 651 +Q L+H ++ + ++ N K + + V+TQ+VE +D F +I Sbjct: 505 RSQYSGLLYHLSTSMCTKHREQTLEGIKDALNPKSPIPVLCVSTQLVEAGVDFSFGCVIR 564 Query: 652 QHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGR 695 D + Q GR +R G PV + L GE GR Sbjct: 565 IAAGMDNVVQAAGRCNRSGE----FGRICPVYIVRL-RGENLGR 603 >UniRef50_UPI0001C373E8 CRISPR-associated helicase Cas3 n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C373E8 Length = 774 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 80/431 (18%), Positives = 155/431 (35%), Gaps = 69/431 (16%) Query: 314 APTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILA 373 PTG GKT ++L +A + + + + + P + +L + + N I Sbjct: 261 VPTGGGKTLSSLRFAIEYCLEHGMEKIFYTAPFMS----ILEQNSEEIKGIAGDDNFIEH 316 Query: 374 HGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLP 433 H S A+ E+ + + ++ K + V ++ + + Sbjct: 317 H-------------SDALAEKSDNSEELSAYELHTERWDKPVIATTMVQLLNALFLGKTS 363 Query: 434 VKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQK 493 RF R + +SV+I+DEV + + + + +++ G+ I+L Sbjct: 364 SVRRFHR---LAKSVIIIDEVQSIPLKCVNMFDLAVNFLSNICGAAIVLCTA-------- 412 Query: 494 LLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPD 553 T PV ++ +P+ L+ E + F+ E +++P+ Sbjct: 413 --------TQPVTDDVRFPM-------------LMDEKESMTGDFTADFELFRRTEIIPE 451 Query: 554 L--------TMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFT 605 + + I + + +I N A Y+ +KE V++ Sbjct: 452 IDEYGYSYEEAADFCIEKFTSSGDLLVIVNTKSSALKMYELIKEKCGDDVEVVHLSTNMC 511 Query: 606 LNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGR 665 RR+K + N K+ V I V TQ++E +D+ F ++ D Q GR Sbjct: 512 PQHRRDKIEAIRGLL--NEKKPV--ICVTTQLIEAGVDISFRCVVRSLAGLDSAVQAAGR 567 Query: 666 LHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPD 725 +RH PV I L + E G + I + + TQ+ I+ + PD Sbjct: 568 CNRHGENKDKC----PVYLIKLKE-EKLGNLKEISTAQDI---TQRIIDNKKNEDISLPD 619 Query: 726 AYRQWLDSIYD 736 + +YD Sbjct: 620 VVSDYFRELYD 630 >UniRef50_A0B6V7 CRISPR-associated helicase Cas3 n=1 Tax=Methanosaeta thermophila PT RepID=A0B6V7_METTP Length = 804 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 86/388 (22%), Positives = 162/388 (41%), Gaps = 60/388 (15%) Query: 312 IEAPTGSGKTETALAYAWKLI-----DQQIADSVIFALPTQATANAMLTRME--ASASHL 364 + PTG+GKT T+LA A +L ++ + +++ALP + + E ++ + Sbjct: 292 LNVPTGTGKTLTSLAMALRLRRRLMNERGVMPRIVYALPFLSIIDQTCDVFEDVLESAGI 351 Query: 365 FSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTI 424 + +++L H +HL ++ E + + + W S+ I V T Sbjct: 352 RADSSVLLKH-----HHLSDITYTKGDEEFESDVSLLLMEGWNSE---------IVVTTF 397 Query: 425 DQVLISVLPVKHRFIRGLG-IGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGS-VILL 482 Q+ ++ ++R +R I S++I+DEV A LL LK + S +IL+ Sbjct: 398 WQLFHTIFSNRNRRLRKFNRIANSIIIMDEVQAVPHRYWHLLHDSLKMLCEKFNSYLILV 457 Query: 483 SATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQP 542 +AT P+ ++ G + V + Y +R +N ++ Sbjct: 458 TATQPLIFSEE----SGEIREAVSDKERY----FRALN------------------RVEL 491 Query: 543 EPICLADM-LPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFH 601 P+ A M L + L N ++ N + A+ Y +K L+ D +LF+ Sbjct: 492 RPMIDAPMSLEEFEALLEGEIHNNPEKDFLIVLNTIRSARNVYSAIKALDLR--DTELFY 549 Query: 602 ARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQ 661 + R ++ + G+R +I V+TQ++E +D+D D + P D + Q Sbjct: 550 LSTHVVPRDRRDRIRRIRDERGGRR---KITVSTQLIEAGVDIDADIVFRDLAPLDSINQ 606 Query: 662 RLGRLHRHHRKYRPAGFEIPVATILLPD 689 GR +R+ K R V+ ++L D Sbjct: 607 VAGRCNRNLSKGRGR-----VSVVILRD 629 >UniRef50_B8CYA2 CRISPR-associated helicase Cas3 n=1 Tax=Halothermothrix orenii H 168 RepID=B8CYA2_HALOH Length = 822 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 86/387 (22%), Positives = 148/387 (38%), Gaps = 80/387 (20%) Query: 309 LTVIEAPTGSGKTETALAYAWKLID-QQIADSVIFALPTQATANAMLTRMEASAS----- 362 L + APTG GKT + A+A KL + +I+ LP + + E + Sbjct: 281 LYSLTAPTGIGKTFASFAFANKLRELSAYGKRIIYCLPYTSIIDQNFNEFEKIINFNLKE 340 Query: 363 ------------HLFSSP-----NLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQ 405 H + +P N+ L + L + + R + E Sbjct: 341 VYKKNPSKYLLKHHYLTPLELKKNIDLEKDSRISRDLEKYLDDRLLLES----------- 389 Query: 406 WLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGL-GIGRSVLIVDEVHAYDTYMNGL 464 W S G I V T Q+L S++ K+ +++ I SV+I+DEV + Sbjct: 390 WES--------GNI-VTTFVQLLESIIGNKNSYLKKFHNIVNSVVILDEVQNIPVEYYHV 440 Query: 465 LEAVLKAQA-DVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQ 523 + VLK + ++L++AT P + + N L+N + N Sbjct: 441 VGKVLKILGKNFNTHILLMTATQP---------------EIIYGNDVVNLVNEKKYNEMN 485 Query: 524 RFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLI-CNLVDVAQV 582 FD ++ + + P + D L L + N ++ LI CN + A Sbjct: 486 VFD------RVNLKIIDKLNPYNIEDFLGYLEL--------NFNSKTGLIVCNTISSALD 531 Query: 583 CYQRLKELNNTQ-VDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQS 641 Y+ + EL ++ + T DR EK + + K K I+V+TQ++E Sbjct: 532 IYKYVDELFTSKGYHVYSLTTNLTPIDRLEKIDEINMKIDKGEKI----IVVSTQLIEAG 587 Query: 642 LDVDFDWLITQHCPADLLFQRLGRLHR 668 +D+ F+ + P D + Q GR +R Sbjct: 588 VDLSFEEVFRDFAPLDSIIQVAGRCNR 614 >UniRef50_Q9YCM6 CRISPR-associated helicase Cas3 n=1 Tax=Aeropyrum pernix RepID=Q9YCM6_AERPE Length = 570 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 87/375 (23%), Positives = 146/375 (38%), Gaps = 96/375 (25%) Query: 308 GLTVIEAPTGSGKTETALA-----YAWKLIDQQIADSVIFALPTQATANAMLTRMEAS-- 360 G+ + APTG+GKTE +A +A K + IA P + AM+ R++ S Sbjct: 56 GVVFLGAPTGAGKTEVFMAPLLASFASK---RPIAARGFLVEPMHSLIKAMVDRLKTSIE 112 Query: 361 -------------ASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWL 407 + L+++P + + ++ F S R +T +G E L Sbjct: 113 TLGVSEDHGETVQPTFLYTAP-ITVTTPDTYFYGFAASRVYRILTHEGVETGRFSMPVGL 171 Query: 408 SQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEA 467 ++ VF + L+ DEV LL Sbjct: 172 QATSYTVF-----------------------------DEAHLVQDEVFLSPR----LLSL 198 Query: 468 VLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDL 527 V+ A A GG +++ SATLP K + + G +WR V + Sbjct: 199 VVAALARAGGLIVVSSATLPSYYKTVIREKLG---------------DWR-VEEVE---- 238 Query: 528 LAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRL 587 L H L P+ ++ + L PD + + ++ N V + Y+ L Sbjct: 239 LDH-TVLSPKIDVEVKNNSLE---PD---------DVDCNVKGLVLVNTVSKSIRVYKSL 285 Query: 588 K-ELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDF 646 K +N++V L H+ F RR+K +++ +++ G I VATQV+E +D+DF Sbjct: 286 KTRCSNSKVL--LLHSLF---KRRDKNSKIELLQKLLKEQDNGVIAVATQVLEVGVDLDF 340 Query: 647 DWLITQHCPADLLFQ 661 + L T+ P D + Q Sbjct: 341 EALYTETAPIDSVIQ 355 >UniRef50_A4FXZ4 CRISPR-associated helicase, Cas3 family n=1 Tax=Methanococcus maripaludis C5 RepID=A4FXZ4_METM5 Length = 820 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 118/562 (20%), Positives = 199/562 (35%), Gaps = 107/562 (19%) Query: 155 AVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAR-EEWISVLEALFLT--------- 204 A+ HHG I + SR E + +D +R EE + E L L Sbjct: 106 AIKNHHGNIKCPLESISSRLEKDLKVQ---YKDILSRKEEVFKIYETLLLEYQIDLEKVF 162 Query: 205 -PAGLSINDIPP---DCSSLLAGFCSLADWLGSWTTTN---TFLFNEDAPSDINALRTYF 257 ++I D D +L +D + + T N + L + D N YF Sbjct: 163 LNMEITIEDFESFIDDMEDMLDEELESSDAIERFLTCNLLYSVLVDSDKKEAANLSNEYF 222 Query: 258 QDRQQDASRVLE----LSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPG---LT 310 D + + E L ++ K ++ L D YQ V P+ + Sbjct: 223 TDNVESYYDIKEYINNLKQEMAEKFVKNNMNLLRDQFYQD------VVENPMISNKCYMY 276 Query: 311 VIEAPTGSGKTETALAYAWKLIDQQ-IADSVIFALPTQATANAMLTRMEAS--------- 360 + APTG GKT T L A K+ ++ +I+ LP + + ME Sbjct: 277 SVNAPTGIGKTLTVLGLANKIKSLNPKSNRIIYCLPYSSIIDQTHGEMENIFKYFIGEEY 336 Query: 361 --------ASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQE---EAWVQCCQWLSQ 409 H + +P LI N +L Q IT Q+ E+W Sbjct: 337 SKKPTKYLLKHHYLTPLLIKGLDNEEDCNLTQD-SDINITYMDQKLLLESWESANI---- 391 Query: 410 SNKKVFLGQIGVCTIDQVLISVLPVKH-RFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAV 468 + T Q S+ K+ R + I S++I+DE+ L++ V Sbjct: 392 -----------ITTFVQFFESIFSNKNSRLKKFHNIINSIVILDEIQTMPAEYYKLIKMV 440 Query: 469 LKAQAD-VGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDL 527 + + ++I L+AT P + D+ L N+ + + +NG D Sbjct: 441 FEILSKRFKTTIIFLTATQPNLACE---DSVNLVNTRYFTNNEFDRVELYKINGLTPID- 496 Query: 528 LAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRL 587 +Q F E++ G ++CN ++VA Y+ + Sbjct: 497 ---EKQFLDSF-------------------EKLFF----GNSAIVVCNKINVAIKLYELI 530 Query: 588 KELNN-TQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDF 646 ++ ++ + T DR+ + I K K N ILV+TQ++E +D+ F Sbjct: 531 RKNEKFSEYSVLSLTTNITPKDRKNR----IKKINKMLKGNEKIILVSTQLIEAGVDLSF 586 Query: 647 DWLITQHCPADLLFQRLGRLHR 668 + P D + Q GR++R Sbjct: 587 QYGFRDVAPLDSIIQTSGRVNR 608 >UniRef50_A8M637 CRISPR-associated helicase Cas3, Anaes-subtype n=1 Tax=Salinispora arenicola CNS-205 RepID=A8M637_SALAI Length = 967 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 65/270 (24%), Positives = 110/270 (40%), Gaps = 42/270 (15%) Query: 447 SVLIVDEVHAYDTYMNGLLEAVLKAQADVGGS-------VILLSATLPMKQKQKLLDTYG 499 SV+++DE H ++ +A D+ GS V+ +SAT + +++ + Sbjct: 184 SVIVIDEAHLAQAFVT-----TTQATFDLDGSPITRPPIVVTMSATTTVGRERNAGRSPV 238 Query: 500 LHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPIC-LADML-PDLTML 557 +H + ++ I + +R L+ ++ P + LAD L PD Sbjct: 239 MHR--ISDDDERHQIAGERLTAGKRLHLVEVKTTKKTEDTVLPAAMAALADRLAPDRV-- 294 Query: 558 ERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVI 617 V ++ N V A+ ++ L++ Q D L R DR Sbjct: 295 ------------VGVVTNTVARARSVFELLRD----QHDAVLLTGRSRPVDRDCLLATYY 338 Query: 618 SNFGKNGKRNVGR--ILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRP 675 + + R+ R I+VATQ VE ++D D LIT+ P L QRLGRL+R R Sbjct: 339 PHISVDRDRSHQRPLIVVATQTVEVGANIDLDALITESAPLASLVQRLGRLNRVARSGHG 398 Query: 676 AGFEIPVATILLPDGEGYGRHEHIYSNVRV 705 G T ++ G G+ + +Y R+ Sbjct: 399 HG------TAVVVHGSATGQEDPVYGPARL 422 >UniRef50_D1CHV2 CRISPR-associated helicase Cas3 n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CHV2_THET1 Length = 858 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 104/434 (23%), Positives = 178/434 (41%), Gaps = 87/434 (20%) Query: 307 PGLTVIEAPTGSGKTETALAYAWKLIDQQIADS------VIFALPTQATANAMLTRMEAS 360 PGL + APTGSGKT AL A + +++ ++ +I+ALP + ++ Sbjct: 298 PGLFSLTAPTGSGKTLAALGAA-LKLRERVRNTKGWTPRIIYALPFTNIIDQNHDVIQKV 356 Query: 361 ASHL--FSSPNLILAHGNSRFNHLFQSIKSRAITEQG--QEEAWVQCCQWLSQSNKKVFL 416 S L +SS L G +H +I+ +E+ EE + W S+ Sbjct: 357 LSELPGYSSDPL----GYLIKHHHLATIQGSKGSEEDVPTEEQLLMVESWDSE------- 405 Query: 417 GQIGVCTIDQVLISVLPVKHRFIRGL-GIGRSVLIVDEVHAYDTYMNGLL-EAVLKAQAD 474 + V T Q+ S++ +R ++ L + S++I+DE+ + L+ E + Sbjct: 406 --VVVTTFVQLFESMVTNSNRRLKKLHNVAGSIIILDEIQSIPYEQWSLVHETITTLAQH 463 Query: 475 VGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQL 534 +G +VI ++AT P ++L E P + + F LL Q+ Sbjct: 464 LGCTVIQMTATRP-----RILP---------EAREVLPQPD-------KYFGLLDR-TQI 501 Query: 535 PPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRL------- 587 PR ++ L DL L ++ V +I N + A YQ+L Sbjct: 502 VPRADVRS--------LEDLQDL--VLELGERYHSVLVILNTIPSAVSFYQQLTSLDGIE 551 Query: 588 -----KELNNTQVDIDLFHARFTLNDRR-----------EKENRVI--SNFGKNGKRNVG 629 EL+ ++ D D + ++ R ++ +RV+ + + K + Sbjct: 552 GYREPSELDRSKDDWDRYWDDYSPKGRMLVHLSTNVVPWQRRHRVVGLARILRRRKEELR 611 Query: 630 RILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPD 689 I+V+TQVVE +D+DFD ++ H P D + Q GR +R A + PV + L D Sbjct: 612 PIVVSTQVVEAGVDLDFDVVVRDHAPLDSIVQAAGRCNRSW----AADDQRPVYVVGLRD 667 Query: 690 GEGYGRHEHIYSNV 703 E IY V Sbjct: 668 ERERHLAERIYGKV 681 >UniRef50_A3MVM5 CRISPR-associated helicase, Cas3 family n=2 Tax=Pyrobaculum RepID=A3MVM5_PYRCJ Length = 488 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 6/109 (5%) Query: 564 ANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKN 623 +G +V ++ N + YQ L++ L H+ T DRR+ E + K Sbjct: 237 VKSGRRVLIVVNNISKVVKWYQELRDYGAV-----LIHSLLTREDRRKAEEALCPVPDKC 291 Query: 624 GKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRK 672 + RI+V T +E +DV FD LIT + + QR+GR+ R K Sbjct: 292 EAQG-ARIVVGTSAIEAGVDVSFDTLITSADSPESVAQRVGRVCRRGGK 339 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P38036 Uncharacterized protein ygcB n=13 Tax=Enterobact... 1216 0.0 UniRef50_Q1JX05 CRISPR-associated helicase Cas3, core n=2 Tax=De... 761 0.0 UniRef50_C5SD53 CRISPR-associated helicase Cas3 n=1 Tax=Allochro... 741 0.0 UniRef50_B3E5V3 CRISPR-associated helicase Cas3 n=3 Tax=Deltapro... 632 e-179 UniRef50_A1SV69 CRISPR-associated helicase, Cas3 family n=2 Tax=... 627 e-178 UniRef50_C6SPI7 Predicted helicases n=1 Tax=Streptococcus mutans... 607 e-172 UniRef50_D2TKK3 CRISPR-associated protein n=1 Tax=Citrobacter ro... 602 e-170 UniRef50_Q12YB2 CRISPR-associated helicase Cas3 n=2 Tax=cellular... 595 e-168 UniRef50_B8GIV7 CRISPR-associated helicase Cas3 n=1 Tax=Methanos... 594 e-168 UniRef50_B4RSJ9 CRISPR-associated helicase Cas3 n=3 Tax=Gammapro... 594 e-168 UniRef50_Q2JWC1 CRISPR-associated helicase Cas3 n=2 Tax=Chroococ... 594 e-168 UniRef50_Q314I0 CRISPR-associated helicase Cas3, core n=1 Tax=De... 594 e-168 UniRef50_B1LQ84 CRISPR-associated helicase Cas3 n=55 Tax=Enterob... 586 e-165 UniRef50_Q04QC1 Helicase n=2 Tax=Leptospira borgpetersenii serov... 585 e-165 UniRef50_D1CAJ4 CRISPR-associated helicase Cas3 n=1 Tax=Sphaerob... 584 e-165 UniRef50_D1CGD0 CRISPR-associated helicase Cas3 n=1 Tax=Thermoba... 579 e-163 UniRef50_C1XFZ7 CRISPR-associated helicase Cas3 n=3 Tax=Meiother... 579 e-163 UniRef50_D2C268 CRISPR-associated helicase Cas3 n=3 Tax=Enteroba... 571 e-161 UniRef50_C6C422 CRISPR-associated helicase Cas3 n=6 Tax=Enteroba... 568 e-160 UniRef50_C7JIG3 CRISPR-associated helicase Cas3 n=8 Tax=Acetobac... 566 e-159 UniRef50_Q1R120 CRISPR-associated helicase Cas3, protein n=1 Tax... 565 e-159 UniRef50_Q7N8H9 Similar to unknown protein YgcB of Escherichia c... 563 e-158 UniRef50_A1ARI0 CRISPR-associated helicase, Cas3 family n=3 Tax=... 561 e-158 UniRef50_Q1GAI8 CRISPR-associated helicase Cas3 n=3 Tax=Lactobac... 559 e-157 UniRef50_A5GBL7 CRISPR-associated helicase Cas3 n=1 Tax=Geobacte... 559 e-157 UniRef50_A5FTJ4 CRISPR-associated helicase Cas3 n=2 Tax=Acidiphi... 556 e-156 UniRef50_A8LYZ3 CRISPR-associated helicase Cas3 n=1 Tax=Salinisp... 554 e-156 UniRef50_D2L2X4 CRISPR-associated helicase Cas3 n=1 Tax=Desulfov... 552 e-155 UniRef50_D2RAZ8 CRISPR-associated helicase Cas3 n=3 Tax=Actinoba... 550 e-154 UniRef50_Q4JWJ6 Putative uncharacterized protein n=3 Tax=Coryneb... 549 e-154 UniRef50_A0LM50 CRISPR-associated helicase, Cas3 family n=1 Tax=... 549 e-154 UniRef50_Q53VY2 Putative uncharacterized protein TTHB187 n=1 Tax... 548 e-154 UniRef50_C2BEU2 CRISPR-associated helicase n=1 Tax=Anaerococcus ... 545 e-153 UniRef50_D0Y922 CRISPR-associated helicase Cas3 n=2 Tax=Dehaloco... 544 e-153 UniRef50_Q67RP4 Putative helicase n=1 Tax=Symbiobacterium thermo... 541 e-152 UniRef50_D1YEE0 CRISPR-associated helicase Cas3 n=1 Tax=Propioni... 541 e-152 UniRef50_Q0W588 Putative CRISPR-associated helicase n=1 Tax=uncu... 541 e-152 UniRef50_C7LYX0 CRISPR-associated helicase Cas3 n=1 Tax=Acidimic... 540 e-152 UniRef50_B8IMR6 CRISPR-associated helicase Cas3 n=1 Tax=Methylob... 538 e-151 UniRef50_B5ZCG0 CRISPR-associated helicase Cas3 n=2 Tax=Gluconac... 537 e-151 UniRef50_C0VRV9 CRISPR-associated helicase Cas3 family protein p... 533 e-150 UniRef50_C7MTN1 CRISPR-associated helicase Cas3 n=1 Tax=Saccharo... 531 e-149 UniRef50_Q47PJ0 CRISPR-associated helicase, Cas3 family n=1 Tax=... 527 e-148 UniRef50_A8SDS1 Putative uncharacterized protein n=1 Tax=Faecali... 525 e-147 UniRef50_Q2RY15 CRISPR-associated helicase, Cas3 family n=1 Tax=... 524 e-147 UniRef50_C0W6U4 CRISPR-associated helicase n=1 Tax=Actinomyces u... 523 e-147 UniRef50_Q03C64 CRISPR-associated helicase n=3 Tax=cellular orga... 522 e-146 UniRef50_B1VIY4 CRISPR-associated protein n=4 Tax=Corynebacteriu... 521 e-146 UniRef50_A7BA68 Putative uncharacterized protein n=1 Tax=Actinom... 520 e-146 UniRef50_D1NTH7 CRISPR-associated helicase Cas3, core n=1 Tax=Bi... 520 e-146 UniRef50_Q0BSC3 Superfamily II DNA and RNA helicase n=2 Tax=Alph... 520 e-145 UniRef50_Q2JH31 CRISPR-associated helicase Cas3, core n=2 Tax=Fr... 519 e-145 UniRef50_D1A6Q2 CRISPR-associated helicase Cas3 n=1 Tax=Thermomo... 517 e-144 UniRef50_Q1J371 CRISPR-associated helicase Cas3, core n=1 Tax=De... 515 e-144 UniRef50_A5UR18 CRISPR-associated helicase, Cas3 family n=1 Tax=... 513 e-143 UniRef50_C7QEM7 CRISPR-associated protein, Cse1 family n=12 Tax=... 509 e-142 UniRef50_C7MTA6 CRISPR-associated helicase Cas3 n=1 Tax=Saccharo... 508 e-142 UniRef50_B7KJ22 CRISPR-associated helicase Cas3 n=1 Tax=Cyanothe... 507 e-142 UniRef50_C1DSH5 CRISPR-associated helicase Cas3, core n=3 Tax=Ps... 505 e-141 UniRef50_B6XT60 Putative uncharacterized protein n=2 Tax=Bifidob... 505 e-141 UniRef50_D0WFD2 CRISPR-associated helicase Cas3 n=1 Tax=Slackia ... 504 e-141 UniRef50_Q5YRB2 Putative uncharacterized protein n=1 Tax=Nocardi... 502 e-140 UniRef50_B8IZA2 CRISPR-associated helicase Cas3 n=1 Tax=Desulfov... 500 e-139 UniRef50_B0LU92 CRISPR-associated helicase Cas3 n=2 Tax=Streptom... 497 e-138 UniRef50_Q1EQS5 CRISPR-associated helicase n=2 Tax=Streptomyces ... 492 e-137 UniRef50_C7MQD2 CRISPR-associated helicase Cas3 n=1 Tax=Saccharo... 489 e-136 UniRef50_B5GA96 Helicase n=1 Tax=Streptomyces sp. SPB74 RepID=B5... 479 e-133 UniRef50_A8M400 CRISPR-associated helicase Cas3 n=1 Tax=Salinisp... 463 e-128 UniRef50_D1Y491 Superfamily II DNA and RNA helicase n=1 Tax=Pyra... 456 e-126 UniRef50_B4S8Q3 CRISPR-associated helicase Cas3 n=3 Tax=Bacteria... 454 e-126 UniRef50_Q6NEQ4 Putative helicase n=1 Tax=Corynebacterium diphth... 452 e-125 UniRef50_B8FDH5 CRISPR-associated helicase Cas3 n=1 Tax=Desulfat... 450 e-124 UniRef50_C2GEZ0 Helicase n=1 Tax=Corynebacterium glucuronolyticu... 450 e-124 UniRef50_Q2RXK0 CRISPR-associated helicase, Cas3 family n=1 Tax=... 446 e-123 UniRef50_B6IWM7 CRISPR-associated helicase Cas3, putative n=1 Ta... 440 e-121 UniRef50_C2CN10 CRISPR-associated helicase Cas3 family protein p... 436 e-120 UniRef50_Q60AC8 CRISPR-associated helicase Cas3 n=1 Tax=Methyloc... 434 e-120 UniRef50_C2KP49 Helicase n=1 Tax=Mobiluncus mulieris ATCC 35243 ... 432 e-119 UniRef50_Q0AA29 CRISPR-associated helicase Cas3 n=1 Tax=Alkalili... 430 e-118 UniRef50_C9M9R3 CRISPR-associated helicase Cas3, core n=1 Tax=Jo... 430 e-118 UniRef50_B5GY58 Crispr-associated helicase cas3 n=1 Tax=Streptom... 429 e-118 UniRef50_C8XAY8 CRISPR-associated helicase Cas3 n=1 Tax=Nakamure... 428 e-118 UniRef50_A8LM38 Cas3: CRISPR-associated helicase Cas3 n=1 Tax=Di... 427 e-118 UniRef50_C5V9N6 Putative helicase n=1 Tax=Corynebacterium matruc... 427 e-117 UniRef50_B0TDT7 Crispr-associated helicase cas3 n=1 Tax=Heliobac... 423 e-116 UniRef50_C4X9J1 CRISPR-associated Cas3 family helicase n=7 Tax=B... 422 e-116 UniRef50_B4UE67 CRISPR-associated helicase Cas3 n=3 Tax=Bacteria... 420 e-115 UniRef50_B6WQ58 Putative uncharacterized protein n=1 Tax=Desulfo... 414 e-114 UniRef50_C4ZJX7 CRISPR-associated helicase Cas3 n=2 Tax=Betaprot... 411 e-113 UniRef50_UPI0001AF1D47 CRISPR-associated helicase Cas3 n=1 Tax=S... 408 e-112 UniRef50_Q0BRG2 Superfamily II DNA and RNA helicase n=1 Tax=Gran... 406 e-111 UniRef50_UPI0001AEDDCA helicase n=1 Tax=Streptomyces albus J1074... 401 e-110 UniRef50_UPI0001A42D32 hypothetical protein PcarcW_06344 n=1 Tax... 396 e-108 UniRef50_UPI0001B51C30 hypothetical protein SvirD4_12620 n=1 Tax... 361 5e-98 UniRef50_Q57821 Uncharacterized protein MJ0376 n=3 Tax=Methanoca... 360 1e-97 UniRef50_D2QT48 CRISPR-associated helicase Cas3 n=1 Tax=Spirosom... 350 1e-94 UniRef50_A7VC53 Putative uncharacterized protein n=1 Tax=Clostri... 350 1e-94 UniRef50_D1B1G2 CRISPR-associated helicase Cas3 n=1 Tax=Sulfuros... 338 6e-91 UniRef50_D0GJL0 Metal dependent phosphohydrolase n=1 Tax=Leptotr... 337 8e-91 UniRef50_B2V8N4 CRISPR-associated helicase Cas3 n=2 Tax=Sulfurih... 336 2e-90 UniRef50_A9B8P3 CRISPR-associated helicase Cas3 n=6 Tax=Chlorofl... 334 9e-90 UniRef50_B8DAB0 Metal dependent phosphohydrolase n=8 Tax=Listeri... 330 2e-88 UniRef50_B3EG04 CRISPR-associated helicase Cas3 n=3 Tax=cellular... 330 2e-88 UniRef50_B5YAX8 CRISPR-associated helicase Cas3 n=1 Tax=Dictyogl... 330 2e-88 UniRef50_C9L3W2 CRISPR-associated helicase Cas3 domain protein n... 327 8e-88 UniRef50_B1B9K1 Crispr-associated helicase Cas3 domain protein n... 327 9e-88 UniRef50_C6Q963 CRISPR-associated helicase Cas3 n=1 Tax=Thermoan... 327 2e-87 UniRef50_B9MLS5 CRISPR-associated helicase Cas3 n=2 Tax=Clostrid... 326 2e-87 UniRef50_C7N973 CRISPR-associated helicase Cas3 n=2 Tax=Bacteria... 325 6e-87 UniRef50_A3DHS2 CRISPR-associated helicase Cas3 n=3 Tax=Clostrid... 322 4e-86 UniRef50_Q8REC9 ATP-dependent RNA helicase n=4 Tax=Fusobacterium... 319 3e-85 UniRef50_A6TQ84 Metal dependent phosphohydrolase n=2 Tax=Firmicu... 319 4e-85 UniRef50_C1QDM1 CRISPR-associated helicase Cas3/CRISPR-associate... 319 5e-85 UniRef50_B3QT88 Metal dependent phosphohydrolase n=3 Tax=Bacteri... 318 7e-85 UniRef50_C5U6V4 CRISPR-associated helicase Cas3 n=3 Tax=Euryarch... 317 9e-85 UniRef50_B2RM87 Probable CRISPR-associated helicase Cas3 core n=... 317 1e-84 UniRef50_B0MFZ6 Putative uncharacterized protein n=1 Tax=Anaeros... 316 2e-84 UniRef50_O57915 Putative uncharacterized protein PH0176 n=1 Tax=... 316 2e-84 UniRef50_B1I4M4 CRISPR-associated helicase Cas3 n=1 Tax=Candidat... 316 3e-84 UniRef50_C1DUL9 Crispr-associated helicase Cas3 n=3 Tax=Hydrogen... 315 5e-84 UniRef50_B1I5P0 Metal dependent phosphohydrolase n=2 Tax=Clostri... 314 1e-83 UniRef50_O66694 Putative uncharacterized protein n=2 Tax=Aquific... 313 2e-83 UniRef50_A5ILM5 CRISPR-associated helicase, Cas3 family n=4 Tax=... 312 3e-83 UniRef50_A7GQ88 CRISPR-associated helicase Cas3 n=1 Tax=Bacillus... 310 2e-82 UniRef50_C0EXP0 Putative uncharacterized protein n=1 Tax=Eubacte... 310 2e-82 UniRef50_UPI0001BC6554 ATP-dependent RNA helicase n=3 Tax=Fusoba... 309 4e-82 UniRef50_C8W344 CRISPR-associated helicase Cas3 n=1 Tax=Desulfot... 309 4e-82 UniRef50_D1JP52 Metal dependent phosphohydrolase n=2 Tax=Bactero... 308 6e-82 UniRef50_B5IGN2 CRISPR-associated helicase Cas3 domain protein n... 307 1e-81 UniRef50_C5UTG9 Metal dependent phosphohydrolase n=1 Tax=Clostri... 307 1e-81 UniRef50_B5YIV2 CRISPR-associated helicase Cas3 n=1 Tax=Thermode... 307 2e-81 UniRef50_B1C2J7 Putative uncharacterized protein n=1 Tax=Clostri... 306 2e-81 UniRef50_Q5JGA4 DEAD/DEAH box helicase, fused to N-terminal HD d... 306 3e-81 UniRef50_D1QSB0 DEAD/DEAH box helicase n=1 Tax=Prevotella oris F... 304 9e-81 UniRef50_Q0SUG1 CRISPR-associated helicase Cas3 domain protein n... 302 4e-80 UniRef50_A4XGC8 CRISPR-associated helicase Cas3 n=1 Tax=Caldicel... 301 7e-80 UniRef50_C9M4E9 CRISPR-associated helicase cas3 domain protein n... 301 9e-80 UniRef50_A5UJJ3 Predicted helicase n=1 Tax=Methanobrevibacter sm... 300 2e-79 UniRef50_B9L1B9 CRISPR-associated helicase Cas3 domain protein n... 300 2e-79 UniRef50_A1HND8 CRISPR-associated helicase Cas3 n=1 Tax=Thermosi... 299 4e-79 UniRef50_O27158 Conserved protein n=1 Tax=Methanothermobacter th... 298 7e-79 UniRef50_C2HJB0 ATP-dependent helicase n=1 Tax=Finegoldia magna ... 298 8e-79 UniRef50_UPI0000F51764 CRISPR-associated helicase Cas3 n=1 Tax=F... 294 1e-77 UniRef50_B7GIV6 CRISPR-associated protein Cas3 n=3 Tax=Bacillace... 293 2e-77 UniRef50_Q184G8 Putative uncharacterized protein n=7 Tax=Clostri... 290 2e-76 UniRef50_UPI0001BC52A9 metal dependent phosphohydrolase n=1 Tax=... 289 3e-76 UniRef50_B7R551 CRISPR-associated helicase Cas3 domain protein n... 285 4e-75 UniRef50_Q2RHQ9 CRISPR-associated helicase Cas3 n=1 Tax=Moorella... 283 2e-74 UniRef50_Q74N41 NEQ022 n=1 Tax=Nanoarchaeum equitans RepID=Q74N4... 280 1e-73 UniRef50_A8L914 CRISPR-associated helicase Cas3 n=5 Tax=Actinomy... 278 5e-73 UniRef50_C8S7A2 CRISPR-associated helicase Cas3 n=1 Tax=Ferroglo... 277 1e-72 UniRef50_D1A6P6 Metal dependent phosphohydrolase n=1 Tax=Thermom... 272 6e-71 UniRef50_Q7MTF0 CRISPR-associated helicase Cas3 n=1 Tax=Porphyro... 272 7e-71 UniRef50_Q8F1E6 ATP-dependent RNA helicase, putative n=2 Tax=Lep... 271 9e-71 UniRef50_C9XQV8 Crispr-associated helicase cas3 n=2 Tax=Clostrid... 267 2e-69 UniRef50_A8UTP5 Putative uncharacterized protein n=1 Tax=Hydroge... 265 4e-69 UniRef50_B5YBH9 CRISPR-associated helicase Cas3 n=1 Tax=Dictyogl... 263 1e-68 UniRef50_A1VHS3 Metal dependent phosphohydrolase n=3 Tax=Desulfo... 263 2e-68 UniRef50_UPI0001C41C2F CRISPR-associated helicase Cas3 n=1 Tax=M... 261 8e-68 UniRef50_B5GV92 Crispr-associated helicase cas3 n=1 Tax=Streptom... 261 9e-68 UniRef50_A4X3M6 CRISPR-associated helicase, Cas3 family n=1 Tax=... 260 2e-67 UniRef50_B9MPU0 CRISPR-associated helicase Cas3 n=1 Tax=Anaeroce... 259 4e-67 UniRef50_Q182D7 Probable ATP-dependent helicase n=11 Tax=Clostri... 258 5e-67 UniRef50_A7HLK7 CRISPR-associated helicase Cas3 n=5 Tax=Bacteria... 257 1e-66 UniRef50_Q57828 Uncharacterized protein MJ0383 n=2 Tax=Euryarcha... 254 9e-66 UniRef50_A5D0R9 Predicted helicases n=1 Tax=Pelotomaculum thermo... 254 1e-65 UniRef50_Q1Q4B7 Putative uncharacterized protein n=1 Tax=Candida... 252 5e-65 UniRef50_B5YKZ7 CRISPR-associated helicase Cas3 n=1 Tax=Thermode... 251 7e-65 UniRef50_Q1CW46 CRISPR-associated helicase Cas3 n=1 Tax=Myxococc... 251 1e-64 UniRef50_A4XFN3 CRISPR-associated helicase Cas3 n=1 Tax=Caldicel... 250 3e-64 UniRef50_O30165 ATP-dependent RNA helicase, putative n=2 Tax=Eur... 249 4e-64 UniRef50_C6A4J6 Putative uncharacterized protein n=1 Tax=Thermoc... 248 7e-64 UniRef50_D0MJ67 CRISPR-associated helicase Cas3 n=1 Tax=Rhodothe... 247 2e-63 UniRef50_B4VUE8 CRISPR-associated helicase Cas3 domain protein n... 245 4e-63 UniRef50_C6PCV3 CRISPR-associated helicase Cas3 n=1 Tax=Thermoan... 244 1e-62 UniRef50_C8VZL0 CRISPR-associated helicase Cas3 n=1 Tax=Desulfot... 244 1e-62 UniRef50_Q2NH80 Predicted helicase n=1 Tax=Methanosphaera stadtm... 243 3e-62 UniRef50_B7KMS0 CRISPR-associated helicase Cas3 n=1 Tax=Cyanothe... 242 5e-62 UniRef50_UPI0001C373E8 CRISPR-associated helicase Cas3 n=1 Tax=R... 241 8e-62 UniRef50_C1TQC9 CRISPR-associated helicase Cas3 n=1 Tax=Dethiosu... 240 2e-61 UniRef50_C0E033 Putative uncharacterized protein n=1 Tax=Coryneb... 239 4e-61 UniRef50_B1XPP6 CRISPR-associated helicase n=2 Tax=Chroococcales... 237 2e-60 UniRef50_A8UUT3 Predicted helicase n=1 Tax=Hydrogenivirga sp. 12... 236 3e-60 UniRef50_C5CFB0 CRISPR-associated helicase Cas3 n=1 Tax=Kosmotog... 233 2e-59 UniRef50_C5A6D4 CRISPR-associated helicase Cas3, core n=1 Tax=Th... 233 2e-59 UniRef50_A9WBB7 CRISPR-associated helicase Cas3 n=3 Tax=Chlorofl... 233 3e-59 UniRef50_B1L410 CRISPR-associated helicase Cas3 n=1 Tax=Candidat... 232 4e-59 UniRef50_B0TFM5 Crispr-associated helicase cas3, putative n=1 Ta... 232 5e-59 UniRef50_UPI0000F51713 CRISPR-associated helicase Cas3 n=1 Tax=F... 231 7e-59 UniRef50_C9RCY3 CRISPR-associated helicase Cas3 n=2 Tax=Thermoan... 230 1e-58 UniRef50_Q1AZD4 CRISPR-associated helicase, Cas3 family n=1 Tax=... 229 3e-58 UniRef50_B1GZL6 CRISPR-associated protein Cas3 n=1 Tax=unculture... 229 4e-58 UniRef50_C0EDE1 Putative uncharacterized protein n=1 Tax=Clostri... 228 6e-58 UniRef50_A0B6V7 CRISPR-associated helicase Cas3 n=1 Tax=Methanos... 226 2e-57 UniRef50_UPI00016C5613 CRISPR-associated helicase Cas3 n=1 Tax=G... 223 3e-56 UniRef50_A6LJX0 CRISPR-associated helicase Cas3 n=1 Tax=Thermosi... 221 1e-55 UniRef50_UPI000190E95D hypothetical protein SentesTyph_16158 n=2... 221 1e-55 UniRef50_C0QHV8 Putative CRISPR-associated helicase Cas3 (ATP-de... 220 2e-55 UniRef50_A3DLC7 CRISPR-associated helicase, Cas3 family n=1 Tax=... 220 2e-55 UniRef50_C3RBZ9 Crispr-associated helicase cas3 n=7 Tax=Bacteroi... 220 3e-55 UniRef50_C4IBN7 Crispr-associated helicase Cas3 n=1 Tax=Clostrid... 217 2e-54 Sequences not found previously or not previously below threshold: UniRef50_C1F2C1 CRISPR-associated helicase Cas3 n=1 Tax=Acidobac... 246 2e-63 UniRef50_A6VNU7 CRISPR-associated helicase Cas3 n=1 Tax=Actinoba... 245 4e-63 UniRef50_A3DKC0 CRISPR-associated helicase Cas3 n=2 Tax=Clostrid... 245 6e-63 UniRef50_Q3AA66 CRISPR-associated helicase Cas3 n=1 Tax=Carboxyd... 241 8e-62 UniRef50_D2MAH9 CRISPR-associated helicase Cas3 n=1 Tax=Rhodopse... 240 2e-61 UniRef50_C5BP95 CRISPR-associated helicase Cas3 domain protein n... 238 5e-61 UniRef50_UPI000197377D putative helicase n=1 Tax=Clostridium sp.... 238 1e-60 UniRef50_B9M5K0 CRISPR-associated helicase Cas3 n=2 Tax=Deltapro... 238 1e-60 UniRef50_A4J384 Metal dependent phosphohydrolase n=1 Tax=Desulfo... 237 2e-60 UniRef50_B1Y4J1 DEAD/DEAH box helicase domain protein n=1 Tax=Le... 235 6e-60 UniRef50_C6LAQ9 CRISPR-associated helicase Cas3 domain protein n... 235 8e-60 UniRef50_B3PKI9 CRISPR-associated helicase Cas3 domain protein n... 235 9e-60 UniRef50_A7AL54 Putative uncharacterized protein n=1 Tax=Parabac... 233 2e-59 UniRef50_B8DQ50 CRISPR-associated helicase Cas3 n=1 Tax=Desulfov... 233 2e-59 UniRef50_B5JKF7 CRISPR-associated helicase Cas3 domain protein n... 233 3e-59 UniRef50_C6J187 Metal dependent phosphohydrolase n=3 Tax=Bacilla... 233 3e-59 UniRef50_D2Q5M0 CRISPR-associated helicase Cas3 n=6 Tax=Bifidoba... 232 5e-59 UniRef50_C2MA87 CRISPR-associated helicase Cas3 domain protein n... 232 6e-59 UniRef50_Q2RL61 CRISPR-associated helicase Cas3, core n=1 Tax=Mo... 231 8e-59 UniRef50_B4SAU8 CRISPR-associated helicase Cas3 n=1 Tax=Pelodict... 230 1e-58 UniRef50_D0KYZ9 CRISPR-associated helicase Cas3 n=1 Tax=Halothio... 230 2e-58 UniRef50_B0KB27 CRISPR-associated helicase Cas3 n=7 Tax=Bacteria... 229 5e-58 UniRef50_C8VWJ7 CRISPR-associated helicase Cas3 n=1 Tax=Desulfot... 228 8e-58 UniRef50_C9R3Z8 CRISPR-associated helicase Cas3 n=4 Tax=Proteoba... 228 8e-58 UniRef50_C7NNV2 Putative helicase n=2 Tax=Halobacteriaceae RepID... 228 1e-57 UniRef50_A2SRR5 Metal dependent phosphohydrolase n=1 Tax=Methano... 226 4e-57 UniRef50_B1LAM3 CRISPR-associated HD domain protein n=2 Tax=Ther... 225 6e-57 UniRef50_C1TRB8 CRISPR-associated HD domain protein n=1 Tax=Deth... 225 7e-57 UniRef50_Q9KFY4 BH0336 protein n=2 Tax=Bacillus RepID=Q9KFY4_BACHD 225 9e-57 UniRef50_A0LDG1 Metal dependent phosphohydrolase n=2 Tax=Proteob... 224 1e-56 UniRef50_A5V1C0 CRISPR-associated helicase, Cas3 family n=1 Tax=... 223 2e-56 UniRef50_C6QNG5 CRISPR-associated helicase Cas3 n=1 Tax=Geobacil... 223 3e-56 UniRef50_UPI00018510E1 hypothetical protein Bcoam_15151 n=1 Tax=... 223 3e-56 UniRef50_C4V2W5 CRISPR-associated helicase Cas3 n=2 Tax=Selenomo... 222 4e-56 UniRef50_C9M4Z3 CRISPR-associated helicase Cas3 domain protein n... 221 6e-56 UniRef50_Q746C3 Hypothetical conserved protein n=2 Tax=Bacteria ... 220 2e-55 UniRef50_A3J8H8 CRISPR-associated helicase Cas3 n=1 Tax=Marinoba... 220 2e-55 UniRef50_B2GD19 Putative uncharacterized protein n=1 Tax=Lactoba... 220 2e-55 UniRef50_A7ZDW8 Crispr-associated helicase Cas3 domain protein n... 219 4e-55 UniRef50_A6UVX5 CRISPR-associated helicase Cas3 n=2 Tax=Methanoc... 219 4e-55 UniRef50_B8CYA2 CRISPR-associated helicase Cas3 n=1 Tax=Halother... 218 7e-55 UniRef50_B1YHA2 Metal dependent phosphohydrolase n=1 Tax=Exiguob... 218 7e-55 UniRef50_A6TNS1 CRISPR-associated helicase Cas3 n=1 Tax=Alkaliph... 218 8e-55 UniRef50_D1CHV2 CRISPR-associated helicase Cas3 n=1 Tax=Thermoba... 218 1e-54 UniRef50_D2L2Z3 Metal dependent phosphohydrolase n=2 Tax=Desulfo... 217 2e-54 UniRef50_C0GMN4 CRISPR-associated helicase Cas3 n=1 Tax=Desulfon... 216 3e-54 UniRef50_C6PBT9 CRISPR-associated helicase Cas3 n=1 Tax=Thermoan... 216 3e-54 UniRef50_C1DUR0 Crispr-associated helicase Cas3 n=1 Tax=Sulfurih... 216 4e-54 UniRef50_C6QYT7 CRISPR-associated helicase Cas3 domain protein n... 215 4e-54 >UniRef50_P38036 Uncharacterized protein ygcB n=13 Tax=Enterobacteriaceae RepID=YGCB_ECOLI Length = 888 Score = 1216 bits (3147), Expect = 0.0, Method: Composition-based stats. Identities = 888/888 (100%), Positives = 888/888 (100%) Query: 1 MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSK 60 MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSK Sbjct: 1 MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSK 60 Query: 61 QRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLY 120 QRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLY Sbjct: 61 QRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLY 120 Query: 121 WFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASL 180 WFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASL Sbjct: 121 WFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASL 180 Query: 181 ASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTF 240 ASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTF Sbjct: 181 ASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTF 240 Query: 241 LFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLV 300 LFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLV Sbjct: 241 LFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLV 300 Query: 301 DALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEAS 360 DALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEAS Sbjct: 301 DALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEAS 360 Query: 361 ASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIG 420 ASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIG Sbjct: 361 ASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIG 420 Query: 421 VCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVI 480 VCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVI Sbjct: 421 VCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVI 480 Query: 481 LLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSI 540 LLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSI Sbjct: 481 LLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSI 540 Query: 541 QPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLF 600 QPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLF Sbjct: 541 QPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLF 600 Query: 601 HARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLF 660 HARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLF Sbjct: 601 HARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLF 660 Query: 661 QRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGAS 720 QRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGAS Sbjct: 661 QRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGAS 720 Query: 721 LFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDND 780 LFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDND Sbjct: 721 LFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDND 780 Query: 781 ETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRS 840 ETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRS Sbjct: 781 ETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRS 840 Query: 841 FSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMTRVIPANPK 888 FSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMTRVIPANPK Sbjct: 841 FSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMTRVIPANPK 888 >UniRef50_Q1JX05 CRISPR-associated helicase Cas3, core n=2 Tax=Desulfuromonadales RepID=Q1JX05_DESAC Length = 885 Score = 761 bits (1965), Expect = 0.0, Method: Composition-based stats. Identities = 423/899 (47%), Positives = 556/899 (61%), Gaps = 35/899 (3%) Query: 1 MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSK 60 ME K+ YWGK+++ HLL YHCLDVAAVA WW+ S +++ FC + + Sbjct: 1 MEFVKFYA-YWGKTAE----DGRYHLLPYHCLDVAAVAAAWWNASFAIRHRFC--QGQDE 53 Query: 61 QRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLY 120 R++AWLLFF ALHD GKFD+RFQ KS ++ +L + + PS + + HG AGLY Sbjct: 54 TRIRAWLLFFCALHDYGKFDLRFQLKSHPAFKQLYGFSDGIL-PSKNESKDYWHGEAGLY 112 Query: 121 WFNQDSL---SEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMP 177 WF+ D L E GD + P + ++ PW+EAVTGHHG + ++ + Sbjct: 113 WFHNDILELFGEGDTGDSLFVDENDPEQWAAFKPWIEAVTGHHGHLKNADYLRDLSFSSQ 172 Query: 178 ASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCS----SLLAGFCSLADWLGS 233 YA+ D ++R W+ LE LFLTPAGLS+ PP S LAGFCS+ADWLGS Sbjct: 173 V-DDRYASIDFKSRVAWLYALEKLFLTPAGLSMTSEPPCLSSYQAVFLAGFCSVADWLGS 231 Query: 234 WTTTNTFLFNEDAPSDINALRTYFQ-DRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQ 292 F F E L++YF+ DA RVL+LSGL+ + + GV ALL G Sbjct: 232 RCDDTDFSFLETPQD----LQSYFEGKIAADAQRVLQLSGLIGQPKSFSGVAALLPAGKP 287 Query: 293 PRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANA 352 PR LQ L + LP P LT+IEAPTG+GKTE ALA+AWK++D +A+++IFALPTQATANA Sbjct: 288 PRPLQCLTENLPANPSLTIIEAPTGNGKTEAALAHAWKIVDSGLAEAIIFALPTQATANA 347 Query: 353 MLTRMEASASHLFSS-PNLILAHGNSRFNHLFQSIKSRAITEQGQE-EAWVQCCQWLSQS 410 M R+E +A LF+ PNL+LAHG +RFN F +K R E G E + WV+C +WL++S Sbjct: 348 MFGRLEKAAKILFADSPNLLLAHGFARFNEPFAELKKRGRVEDGDEQDGWVKCSEWLAES 407 Query: 411 NKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLK 470 K+VFLGQIGVCTIDQVLISVLPV+HRF+RG G+GRSVLIVDEVHAYD YM GLLE VL+ Sbjct: 408 RKRVFLGQIGVCTIDQVLISVLPVRHRFVRGFGVGRSVLIVDEVHAYDAYMYGLLEEVLR 467 Query: 471 AQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAH 530 Q GGS ILLSATLP QKQ L + +YPLI+ + L Sbjct: 468 QQRASGGSAILLSATLPFHQKQHLFSAWDSDLPESRERDSYPLISC--ATNREVLPLSLA 525 Query: 531 PEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKEL 590 + P ++ E + M+PD +++ER+IAAA AGAQV +ICNLVDVAQ Y++LK+ Sbjct: 526 EDDEPDPLTVNVECVRFDGMVPDASLIERLIAAAAAGAQVAVICNLVDVAQNLYEQLKKQ 585 Query: 591 NNT-QVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWL 649 + +DLFHARF DR+ KE VI FG NG R GRILVATQVVEQSLDVDFDW+ Sbjct: 586 AKEASITVDLFHARFRFLDRQVKEQSVIHTFGLNGNRKKGRILVATQVVEQSLDVDFDWI 645 Query: 650 ITQHCPADLLFQRLGRLHRH--HRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMW 707 ITQ CP DLLFQR+GRLHRH + RPA F + T++LP + YG +Y N RV+W Sbjct: 646 ITQLCPIDLLFQRMGRLHRHEINDATRPAAFSKRLCTVVLPTDDDYGGTAVVYGNKRVLW 705 Query: 708 RTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMD-EPEWVGNGMDKFESAECEKRFKARK 766 RT+Q + E + FP AYR ++ Y EPE + +FE K +KAR+ Sbjct: 706 RTEQILAE--SEQIVFPVAYRTQIEKAYQQEPWPYEPEEITEANREFEDEIYIKGYKARQ 763 Query: 767 VLQWAEEYS-LQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEA 825 + A + + D+DE+I AVTRDGEMSL ++PY+ + +G++ LDG + + L + E Sbjct: 764 AVNMARDSNPFVDSDESITAVTRDGEMSLTVIPYLDSDAGRRTLDGDLLDSLDEYRLLEI 823 Query: 826 LALNRVNVPFT--WKRSFSEV-VDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMTR 881 LALN +NVP T WK + +V + ED WL + +G++ +G + Y D G+ R Sbjct: 824 LALNSINVPGTGGWKGALKDVPLGEDKRYWLNMQPTREGFIAEGIQTIFRYHRDTGLRR 882 >UniRef50_C5SD53 CRISPR-associated helicase Cas3 n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SD53_CHRVI Length = 877 Score = 741 bits (1912), Expect = 0.0, Method: Composition-based stats. Identities = 378/892 (42%), Positives = 509/892 (57%), Gaps = 42/892 (4%) Query: 3 PFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSK-- 60 K YW K+ + N H YH LD A +A +W S ++ T + + Sbjct: 2 LSKDYWRYWAKADTGVEGANKWHPFAYHSLDAAVIAATFWRDSSAVRRTLMAAFDVEEAE 61 Query: 61 -QRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGL 119 QR+ AW+LFF+ALHDIGK FQ K+ ++ P S T ++HG G Sbjct: 62 IQRLLAWILFFVALHDIGKLHALFQIKAPHILPQIWPDLASTKLIDTSGG-HYDHGREGY 120 Query: 120 YWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPAS 179 LS L +F A+ H ++W W+ AVTGHHG I + D + E Sbjct: 121 R------LSMAELRGWFK--PASRHALKAWSSWLAAVTGHHGEIPDNDDPLPAYAE---- 168 Query: 180 LASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSS----LLAGFCSLADWLGSWT 235 A+ QD AR WI LFL PAGLS+ D PP C + LLAGFCSL DW+GS Sbjct: 169 -ATILEQDANARRAWIQEAADLFLHPAGLSLEDPPPPCVTEARNLLAGFCSLCDWIGSNV 227 Query: 236 TTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQ 295 + +P+D L + + ++D +L GL++ Y+G+ ALL PR Sbjct: 228 DVFAYAPPALSPND--YLHSRLEQIRRD--DILRHFGLIATPLAYQGIPALLKTDEHPRG 283 Query: 296 LQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLT 355 QV++D LP+ PGLT++EAPTGSGKTE ALAYAW+LID +A+S++FALPTQATANAML Sbjct: 284 TQVMIDDLPLVPGLTIVEAPTGSGKTEAALAYAWRLIDAGLAESIVFALPTQATANAMLG 343 Query: 356 RMEASASHLFSSPNLILAHGNSRFNHLFQSI--KSRAITEQGQEEAWVQCCQWLSQSNKK 413 R E + F NL+LAHG+SR N +Q + T QG+ EA VQC WL+ S K+ Sbjct: 344 RCETFSKSAFGRANLVLAHGHSRLNQAYQRLIEAGSKRTAQGETEAGVQCAAWLASSRKR 403 Query: 414 VFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQA 473 VFLGQIGVCT+DQVL+SVLPV+H F+R G+ RSVLIVDEVHAYD YMNGLL VLK Q Sbjct: 404 VFLGQIGVCTVDQVLLSVLPVRHNFVRAFGLHRSVLIVDEVHAYDAYMNGLLIEVLKRQK 463 Query: 474 DVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQ 533 VGGS ILLSATLP + KLL+++G +PV + + YP I L + Sbjct: 464 AVGGSAILLSATLPASIRGKLLESWGH--EPVADVANYPAIWNTAALSESDSPLSLPDTE 521 Query: 534 LPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNT 593 P + +I+ L PD +++R+I AA +GA V ++ N VD AQ + +L + N Sbjct: 522 RPAQRTIEVSLSKLGGACPDEPLIQRIIDAAESGALVGIVMNTVDDAQQLWIQLHK--NA 579 Query: 594 QVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQH 653 QV +DLFHARF L DR+ E RVI ++G++ +R GRILVATQV+EQSLD+DFDWLITQ Sbjct: 580 QVPVDLFHARFRLQDRQRIEQRVIEHYGRDAERTQGRILVATQVIEQSLDLDFDWLITQL 639 Query: 654 CPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHI 713 CP DLLFQRLGRLHRH RK RP F++P T+L + + YG HE IY + R++WRT+ + Sbjct: 640 CPVDLLFQRLGRLHRHSRK-RPDDFQVPTCTVLSVETDDYGLHELIYGDARLLWRTEFLL 698 Query: 714 EELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEE 773 + FP AYR+W++ +Y +A D+ G + + K L Sbjct: 699 ARHK--QIHFPAAYREWIEPVYGEAPWDDEPGTVYGKHLAWRDDQSEAEKKAHRLTTMNL 756 Query: 774 YSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNV 833 +D++E + ++TRDGEMSL +L T +LLDG+ + + Q E L LN V Sbjct: 757 SKFRDDEERLTSLTRDGEMSLSVLL---TREDGRLLDGEDPDQMDEYTQAETLMLNTVPA 813 Query: 834 PFTW--KRSFSEVVDEDGLLWLEGKQNLDG-WVWQGNSIVITYTGDEGMTRV 882 P +W ++ V DEDG + L K + DG W + YT + G+ + Sbjct: 814 PHSWGDRQLAGHVRDEDGRIRL--KMHDDGQQRWSSLDGGVCYTTELGLAKA 863 >UniRef50_B3E5V3 CRISPR-associated helicase Cas3 n=3 Tax=Deltaproteobacteria RepID=B3E5V3_GEOLS Length = 906 Score = 632 bits (1631), Expect = e-179, Method: Composition-based stats. Identities = 266/911 (29%), Positives = 414/911 (45%), Gaps = 105/911 (11%) Query: 1 MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSK 60 M+P+ YWGK+ K G HLL YHCLDVAAV +D L + ++ Sbjct: 1 MQPY---FQYWGKAEK---DGLRYHLLPYHCLDVAAVGWLLFDPEKPLCKRLAKQLEIAP 54 Query: 61 QRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLY 120 ++ W+ FF+ LHDIGKF + FQ + + + L P+++ + H + G Sbjct: 55 AHLQRWITFFLCLHDIGKFAVVFQGQ-------VTGLSDDLVKPNSRKRYEERHDSLGYC 107 Query: 121 WFNQDSLSEQSLG---DFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMP 177 + + L F + H + W++ VTGHHG D + + Sbjct: 108 LWRAEDGLRDRLEMEDSCFLSRSNSRHLKLALDIWMQIVTGHHGIPPK-TDLHLTNY--- 163 Query: 178 ASLASYAAQDKQAREEWISVLEALFLTPAGLSIND------IPPDCSSLLAGFCSLADWL 231 + +QD +A +++ + +F+ +++ S +LAG LADWL Sbjct: 164 -----FDSQDNEAAWQYLLEISRMFVVDEMVAVLSDKTFCTRLKSSSWILAGLVVLADWL 218 Query: 232 GSWTTTNTFLFNEDAPSDINALRTYFQD-RQQDASRVLELSGLVSNKR-CYEGVHALLDN 289 GS ++F + E +L Y+Q+ A +E + L+ + Y + L + Sbjct: 219 GSSRLPDSFCYQE------ISLDDYWQNNALAFAEMAVEQAQLIPSPVAPYLNIQNLFNF 272 Query: 290 GYQPRQLQVLVD--ALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQ 347 P LQ + L L ++E TG+GKTE AL A +L+ AD + ALPT Sbjct: 273 ITTPTPLQQWAENVELASGNQLFILEDVTGAGKTEAALILAHRLMANGFADGLYVALPTM 332 Query: 348 ATANAMLTRMEASASHLFSS---PNLILAHGNSRFNHLFQSIKSRAIT------EQGQEE 398 AT+NAM R+ L+ P+L+LAHG + F+ S + +E Sbjct: 333 ATSNAMYERLGKVYRRLYEDDHAPSLVLAHGARHLSEAFRESLSMPEAGESRKYDHDEET 392 Query: 399 AWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYD 458 C WL+ S KK L ++GV T+DQ L++VLP +H+ +R LG+ R +LI+DEVHAYD Sbjct: 393 IEAVCSAWLADSRKKALLAEVGVGTLDQALLAVLPARHQSLRCLGLARKILIIDEVHAYD 452 Query: 459 TYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTY----GLHTDPVENNSAYPLI 514 YMN LL+++L+ A GGSVI+LSATLP + + L + G ++ YPL+ Sbjct: 453 PYMNKLLQSLLEYHAAQGGSVIMLSATLPFSMRVEYLCAFCKGAGTEVSVLKKTEQYPLV 512 Query: 515 NWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLIC 574 F ++H E + +A + LE + A G VC + Sbjct: 513 TH--------FSSISHLETGLSTRQEVERTVTVALLDTVDNALEHIRQAVEQGQCVCWVR 564 Query: 575 NLVDVAQVCYQRL-KELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKR--NVGRI 631 N V A Y+ L ++ + + LFH+RF + DR+ E +S FGK GR+ Sbjct: 565 NTVGDAIKTYRLLARQKWLDKERLSLFHSRFAMIDRQRIELETLSLFGKESTAEMRRGRV 624 Query: 632 LVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGF---------EIPV 682 L+ATQVVEQSLD+DFD +I+ P DLL QR+GR HRH R E PV Sbjct: 625 LIATQVVEQSLDLDFDMMISDLAPIDLLIQRVGREHRHIRDADGTRLEHEGAVDKRETPV 684 Query: 683 ATILLPDGEG----------YGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLD 732 I P + +Y NV +W TQ+ + + L P R ++ Sbjct: 685 FYIFGPSASETPAENWLKAVLPGTQKVYQNVGQLWLTQKLLAK--AGKLSMPGDARSLIE 742 Query: 733 SIY-DDAEMDEPEWVGNGMDKFESAECEKRFKAR-KVLQWAEEYSLQDN------DETIL 784 +Y D+A+ P+ + DK E+ K AR L+ A+ YS +E Sbjct: 743 GVYSDEAQATIPDSLQTLSDKAEAEAYAKLGIARMNALKLAKGYSRDSAEDSGGWEEETK 802 Query: 785 AVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVP-FTWKRSFSE 843 TR G+ ++ + L DG+++ + + + A ++ ++VP +W R+ E Sbjct: 803 IPTRLGDDTVRVALV--------LPDGEMWRPYADSKNF-AWDMSMLSVPKNSWLRA-KE 852 Query: 844 VVDEDGLLWLE 854 V+ D LE Sbjct: 853 VIPTDVRSSLE 863 >UniRef50_A1SV69 CRISPR-associated helicase, Cas3 family n=2 Tax=Gammaproteobacteria RepID=A1SV69_PSYIN Length = 823 Score = 627 bits (1616), Expect = e-178, Method: Composition-based stats. Identities = 302/865 (34%), Positives = 446/865 (51%), Gaps = 97/865 (11%) Query: 7 ICHYWGKS-SKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKA 65 YWGK+ S+S G D HLL YHCLDV AVAD W ++S +L + ++ + K Sbjct: 18 YFMYWGKAKSESQATGADYHLLPYHCLDVTAVADVWLEESNILLSQISCYLDTTQDQAKR 77 Query: 66 WLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQD 125 LFFI LHD+GKFD RFQ + L + T ++HG+ G F++ Sbjct: 78 ICLFFILLHDLGKFDARFQNFREDIRQILQGDDWEIEPDPTY----YSHGSCGYRQFSE- 132 Query: 126 SLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAA 185 FD ++AV GHHG SQ + P + Sbjct: 133 ------------MFDTNEA--------MKAVAGHHGSCDTSQP-----YHDPDADDELLE 167 Query: 186 QDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNED 245 D+QAR+EW+ + DIP +LAG CS+ADW+GS T T Sbjct: 168 LDEQARKEWVEFSLDFCQLKEVPDVGDIP-----MLAGLCSVADWVGSSITNFT------ 216 Query: 246 APSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPV 305 L+ Y+QD A + L +G++ ++ A L NGY+PR +Q L+ +P+ Sbjct: 217 -TDPSINLQQYYQDTLLRARKALVDTGMI--EKSQGAGFAYLFNGYRPRGIQTLLSEMPL 273 Query: 306 APGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLF 365 GLT++E+ TGSGKTE ALAYA LI+ +AD V+F LPTQATAN + +R+ +A LF Sbjct: 274 KAGLTLVESDTGSGKTEFALAYASSLIEAGLADGVVFGLPTQATANGLFSRVGDAAKKLF 333 Query: 366 SSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTID 425 LAHG S++ +S +L QSNK+ FLG + V TID Sbjct: 334 PDTKTTLAHGKSKYLMSDES-------------------GFLQQSNKRAFLGSMSVATID 374 Query: 426 QVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSAT 485 Q+L+ VL ++H+F+R G +SVL++DE+H++D YM GL+E VLK Q SVILLSAT Sbjct: 375 QILMGVLGIRHQFVRSFGTRKSVLVLDEIHSFDAYMLGLIEQVLKGQHQAYSSVILLSAT 434 Query: 486 LPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPI 545 LP K+KLL TY + N+AYPL++ + + L + +I + Sbjct: 435 LPNTLKEKLLSTYKGKS----LNNAYPLVSHTDLFATTQEFTLP---KQATNKTITLKTW 487 Query: 546 CLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFT 605 C D+LP + ++MI + GA V +ICN V AQ Y ++K + N ++ I+LFHARFT Sbjct: 488 CSDDLLPSINQRKKMIDWVSQGAMVGVICNTVKDAQRLYHQIK-IANPELKIELFHARFT 546 Query: 606 LNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGR 665 DR+++E++V+ N+ KN KR GR+L+ATQV+EQSLD+DFD LI+Q P + L QR+GR Sbjct: 547 FGDRKKREDQVLKNYDKNAKR-TGRLLIATQVIEQSLDLDFDVLISQIAPIEFLMQRMGR 605 Query: 666 LHRHHRK-----YRPAGFEIPVATILLPDGE------------GYGRHEHIYSNVRVMWR 708 L RH R R + + P+ LLP+ + Y ++Y N R+++R Sbjct: 606 LWRHERIDSGLCPRASCIKAPLFITLLPNEKITDLTSSEQLKHHYQGSGYVYQNSRLLYR 665 Query: 709 TQQHIEELNGASLFFPDAYRQWLDSIYDDAEM-DEPEWVGNGMDKFESAECEKRFKARKV 767 T+Q++ + L FPD YR+ ++ ++++ +EP+ + + D++ + AR Sbjct: 666 TEQYLNQH--PLLHFPDCYREAINYVHEEQSYSEEPQVLTSVADEYSIIADGSNYTARS- 722 Query: 768 LQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALA 827 L + L D D +TRDGEMS ++ + + G L G E E ALA Sbjct: 723 LSKLQSKPLNDVDPRCALLTRDGEMSATVVLFKED--GSLLHGGDFNEQQDRENSTVALA 780 Query: 828 LNRVN-VPFTWKRSFSEVVDEDGLL 851 + + VVD+D + Sbjct: 781 KKHAKGIKDERYYCYKAVVDKDIIY 805 >UniRef50_C6SPI7 Predicted helicases n=1 Tax=Streptococcus mutans NN2025 RepID=C6SPI7_STRMN Length = 936 Score = 607 bits (1565), Expect = e-172, Method: Composition-based stats. Identities = 219/916 (23%), Positives = 374/916 (40%), Gaps = 94/916 (10%) Query: 9 HYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVV--LQNTFCRNEML---SKQRV 63 ++W K + L+ H D VA W+ + + + ++ Sbjct: 17 NFWAK-KREEKGQFLWLPLMQHLEDTKNVAGLLWEHWLGEGQKALIIASLKTGKKDEKTA 75 Query: 64 KAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFN 123 K F A+HDIGK FQ K + + ++ R G + + N Sbjct: 76 KQLAQFLAAVHDIGKATPVFQSKKGYA-----NSKDLDLELLEKLERAGFEGISSITLAN 130 Query: 124 QDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASY 183 + G + ++ + V GHHG + + K++ ++ Sbjct: 131 PEKSPHALAGQYILHYNKVKEDIAT------IVGGHHGKPVDDRATYKNQRSQESNYYQS 184 Query: 184 AAQDKQAREEWISVLEALF---LTPAGL-SINDIPP---DCSSLLAGFCSLADWLGSWTT 236 ++W E + L +G S++++P +L+G +ADW+ S Sbjct: 185 GKSGNTIYQKWERAQEEILNWALEVSGFKSVDELPTIKQPAQVILSGLLIMADWIASNED 244 Query: 237 TNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQL 296 + ++ + A R ++ + + N +EG++ ++PR + Sbjct: 245 YFPLISIDEREVENKADRLSGFEKWKR-----SSLWVSRNTWDFEGLYQAR-FDFEPRDV 298 Query: 297 QVLVD---ALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAM 353 Q ++ A PG+ ++EAP G GKTE AL +L ++ + + F LPTQAT+N + Sbjct: 299 QAVLSKTIADTEQPGIFILEAPMGIGKTEAALVATEQLAEKTDRNGIFFGLPTQATSNGI 358 Query: 354 LTRMEASASHLFSS----PNLILAHGNSRFNHLFQSI-KSRAITEQGQEEAWVQCCQWLS 408 R+E + ++ L HG + N F + K +I E V +W S Sbjct: 359 FPRIEKWLESIKEDLDDNISIQLVHGKAALNADFSELPKGISINIDDFENGSVIVNEWFS 418 Query: 409 QSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAV 468 K L V T+DQ L+ L KH +R LG + V+++DEVHAYD YMN L Sbjct: 419 -GRKTAVLDDFVVGTVDQFLMLALKQKHLALRHLGFSKKVVVIDEVHAYDAYMNQYLLEA 477 Query: 469 LKAQADVGGSVILLSATLPMKQKQKLLDTY----GLHTDPVENN--------SAYPLINW 516 L+ G VI+LSATLP ++++KLL +Y G + E AYPLI + Sbjct: 478 LRWMGAYGVPVIILSATLPAERREKLLKSYMFGMGKRFEEKEKEQLSKQLKTEAYPLITY 537 Query: 517 RGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNL 576 FD+ E F L L + +L+ + + G +I N Sbjct: 538 NN-----GFDICQITE-----FKKGENKKILLSQLEEEDLLDTVKGLLSDGGVAGIIVNT 587 Query: 577 VDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQ 636 V AQ + + + +++FH+ F +R KE ++ GK+ R +I++ TQ Sbjct: 588 VKRAQKIAKVFADSLGEDM-VEIFHSGFIATERVRKEQELLKMIGKDANRPYRKIIIGTQ 646 Query: 637 VVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATIL-LPDGEGYGR 695 V+EQSLD+DFD +I+ P DLL QR+GRLHRH + RP P ++ + D + Sbjct: 647 VIEQSLDIDFDVMISDLAPMDLLIQRMGRLHRH-KIDRPQKHVFPKFYVIGMNDDLKFEE 705 Query: 696 HEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDA-EMDEPEWV-----GNG 749 ++ RTQ ++ + S+ P+ + +YD+ E+D P + N Sbjct: 706 GSSFVYGDYLLARTQYYLPD----SINLPEDISILVQKVYDEKLELDYPTELLDKKYHNA 761 Query: 750 MDKFESAECEKRFKAR-----------------KVLQWAEEYSLQDNDETILAVTRDGEM 792 + E+ K KAR ++ W E D+DE A RD E Sbjct: 762 KSEHETKIGNKESKARDYKIADPVLRETRSRKENLIGWLENSHPDDSDERAYAQVRDIED 821 Query: 793 SLPLLPYVQTSSGKQLL--DGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGL 850 + ++ + G L + E ++ + +A N + +P +S++ V D Sbjct: 822 IVEVIALKKVGDGYALFGEGEDLSELITDFNIAKKVAQNTLRLPIALTKSYN-VDDTIKE 880 Query: 851 LWLEGKQNLDGWVWQG 866 L + + NL+ W Sbjct: 881 LEMYSRMNLNNWQDSS 896 >UniRef50_D2TKK3 CRISPR-associated protein n=1 Tax=Citrobacter rodentium ICC168 RepID=D2TKK3_CITRO Length = 906 Score = 602 bits (1553), Expect = e-170, Method: Composition-based stats. Identities = 249/912 (27%), Positives = 392/912 (42%), Gaps = 94/912 (10%) Query: 4 FKYICHYWGKSSKSLTKGND-IHLLIYHCLDVAAVADCWWDQS-VVLQNTFCRNEMLSKQ 61 F I ++WGK+ + G D HLL +H LDVAAV + L + F R M + Sbjct: 24 FVSIFNFWGKTRQGEKDGGDDYHLLCWHSLDVAAVGYWMVKNNIYGLADHFRRLGMTDIE 83 Query: 62 RVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYW 121 + + + + HD GKF FQ + L + Q K +H G YW Sbjct: 84 QAAQFFAWLLCWHDTGKFASSFQQLYSHPDLNVPAG-------RRQNYEKISHTTLG-YW 135 Query: 122 FNQDSLSEQSLGDFFSFFDAAPHPYESWFP-WVEAVTGHHGFILHSQDQDKSRWEMPASL 180 LS+ + F P + W+ TGHHG L Sbjct: 136 LWNTWLSD--CPELFPHSTLTPRKLKRVIAMWMPLTTGHHGRPPDGV----------QEL 183 Query: 181 ASYAAQDKQAREEWISVLEALFLT---PAGLSIND---IPPDCSSLLAGFCSLADWLGSW 234 ++ QDK+A E+++ +ALF P+ +D + S L++ LADW GS Sbjct: 184 DNFLPQDKEAAREFLASAKALFPQIVIPSCWDEDDGIALFQQLSWLISAAVVLADWSGSS 243 Query: 235 TTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPR 294 T + + TY+Q + A L + S + GV+ L QP Sbjct: 244 TRFFPR------IASKMPVETYWQQALEKAKAALAIFPPSSGVAPFSGVNTLFPFIRQPT 297 Query: 295 QLQVLV---DALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATAN 351 LQ V D L ++E TG+GKTE AL +L+ A + F LPT ATAN Sbjct: 298 PLQQKVLTLDIHDAGAQLFILEDVTGAGKTEAALILTHRLMAAGKAKGLFFGLPTMATAN 357 Query: 352 AMLTRMEASASHLF---SSPNLILAHGNSRFNHLF-QSIKSRAITEQGQEEAWVQCCQWL 407 AM R+ S L+ S P+L+LAH F QSI S + G+ + C W Sbjct: 358 AMFDRLAQSWQALYQPGSRPSLVLAHSARGLMDRFNQSIWSADLIGAGEPDERQGCAAWF 417 Query: 408 SQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEA 467 + SNKK L ++GV T+DQ +++V+P KH +R LG+ +L+ DE+HAYD YM+ +LE+ Sbjct: 418 ADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHAYDAYMSRILES 477 Query: 468 VLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTD-----PVENNSAYPLINWRGVNGA 522 +++ QA G + ILLSATL +Q+ +L+ + P+ + YP + G Sbjct: 478 LIENQARNGNTTILLSATLSQQQRDRLVAAFARGRGSHIEAPLLGHGDYPWLTQVTGTGV 537 Query: 523 QRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQV 582 + E + + + + + +ER+ AA+ G + I N VD A Sbjct: 538 VSRHVATRKEV--------ERCVKVGWLYSEQSCIERIEQAASEGQCIAWIRNSVDDAIR 589 Query: 583 CYQRLKELNNTQVD-IDLFHARFTLNDRREKENRVISNFGK-NGKRNVGRILVATQVVEQ 640 Y++L + I LFH+RF DR+ E +S FGK + G++L+ TQV+E Sbjct: 590 VYRQLIARGVIAAENISLFHSRFAFYDRQRIETETLSRFGKSESTQRAGKVLICTQVIES 649 Query: 641 SLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRP-------AGFEIPVATILLPDGEGY 693 S+D+D D +I+ P DLL QR GRL RH R + P +L P+ + Sbjct: 650 SVDIDMDAMISDLAPVDLLIQRAGRLQRHIRDRNGQLKNSGQDERDAPELLVLAPEWDEA 709 Query: 694 G----------RHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEP 743 ++Y + +W TQ+ + E ++ P + R ++S+Y ++ + Sbjct: 710 PQEDWFSCAMRNSAYVYPDHGRLWLTQRVLRE--QGAIRMPQSARLLIESVYGESVVMPV 767 Query: 744 EWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDE-TILAVTRDGEMSLPLLPYVQT 802 + + C++ F + +L +A YS +++ + TR E S+ L Sbjct: 768 GFAETEQKQEGKYYCDRAFATQMLLNFAAGYSSENSHYLSETLSTRLAEESVTLWLAK-- 825 Query: 803 SSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGW 862 ++DG V E +E ++ V V +W G L + L W Sbjct: 826 -----IVDGVVMPYALSEHPWE---MSVVRVRQSWWG------KHKGEFELLEGEALQNW 871 Query: 863 VWQG-NSIVITY 873 + TY Sbjct: 872 CAEHYQDKDFTY 883 >UniRef50_Q12YB2 CRISPR-associated helicase Cas3 n=2 Tax=cellular organisms RepID=Q12YB2_METBU Length = 921 Score = 595 bits (1533), Expect = e-168, Method: Composition-based stats. Identities = 262/946 (27%), Positives = 414/946 (43%), Gaps = 109/946 (11%) Query: 11 WGKSSKSLTKGND-IHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLF 69 WGKS + N HLL+YH LDVAA + +L F L +++ + + F Sbjct: 5 WGKSKSATEYDNSNYHLLVYHGLDVAATGRTILQKDKLLLQKFTDIISLDEEKTISLISF 64 Query: 70 FIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWF---NQDS 126 +A+HDIGKF RFQ E L + H + GL+ + + Sbjct: 65 CLAVHDIGKFSERFQNLQPELLNDLRD-------HDSDKSYTVRHDSMGLHLWKEIWSTA 117 Query: 127 LSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQ 186 E LG +D + PW+ +VTGHHG +S + + Sbjct: 118 FDENWLGLDKEIYDKFDW-NDLIGPWMNSVTGHHGKPPEYV----HNGITISSSDLFTDE 172 Query: 187 DKQAREEWISVLEALFLTPA--------------GLSINDI---PPDCSSLLAGFCSLAD 229 D + ++ +L L+ A I+D+ S L+AG ++D Sbjct: 173 DIEMASSFVKEAASLLLSDALSDAFEFTSCSEEQAYDIDDMILAFKRTSWLIAGLAIVSD 232 Query: 230 WLGSWTTTNTFLFNEDAPSDINALRTYFQD-RQQDASRVLELSGL-VSNKRCYEGVHALL 287 W+GS ++ +E L+ Y +A + LE +G+ S G+ L Sbjct: 233 WIGSSEEHFEYISSE------IPLKEYLDKYALPNAEKALEDAGIYPSTPSTITGMDELF 286 Query: 288 DNGYQPRQLQVLVD--ALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALP 345 + P +Q V + P L ++E TGSGKTE AL A +L+ + +A LP Sbjct: 287 PDIVVPSPMQEHVSNCDVAAGPQLFILEDATGSGKTEAALCLAHRLMAKGLAQGAFVGLP 346 Query: 346 TQATANAMLTRMEASASHLFSS---PNLILAHGNSRFNHLFQSIKS--------RAITEQ 394 T AT+NAM R+ S +++ P+L+LAHG + + F+S Sbjct: 347 TMATSNAMYERLGNSYQRMYAKGERPSLVLAHGQNYLSDAFRSSIGFQNSKNGYYGDGSS 406 Query: 395 GQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEV 454 G E QC W++ + KK L +GV TIDQ L+++L H+ +R LG+ R+VLIVDEV Sbjct: 407 GDETIQAQCSAWIADNRKKALLADVGVGTIDQALMAILQSNHQSLRLLGLSRNVLIVDEV 466 Query: 455 HAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVE---NNSAY 511 HAYD YM+ LL ++L+ +GGS ILLSATLP K +Q L+ + D +N Y Sbjct: 467 HAYDPYMHTLLCSLLEFHVSLGGSAILLSATLPQKHRQGLISHFCKGLDSPTMSASNEEY 526 Query: 512 PLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVC 571 L+ N + P + + + + ++ +++I + G C Sbjct: 527 ALVTHVSENEISETPIGTRPGT--------ERTVNVEFLHDEPSVEDKLIKCSKEGKCCC 578 Query: 572 LICNLVDVAQVCYQRL-KELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRN--V 628 I N VD A Y+++ EL N ++ LFHARF + DR + EN V+ FGK RN Sbjct: 579 WIRNTVDDAIEAYEKIVSELGND--NVLLFHARFAMGDRLKIENDVLETFGKRSDRNCRK 636 Query: 629 GRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFE-----IPVA 683 G++L+ATQVVEQSLD+DFD++++ P DLLFQR GRL RH R + + E P+ Sbjct: 637 GKVLIATQVVEQSLDIDFDYMVSDLAPMDLLFQRAGRLQRHPRDKKGSISENDERGRPLL 696 Query: 684 TILLPDGEG----------YGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDS 733 IL P+ + ++Y + +W T + E S+ P R +++ Sbjct: 697 GILAPELSKDVTENWYSDMFKGGAYVYPSHGKLWLTANLLFEHGRFSI--PKDSRSFIEY 754 Query: 734 IYDD-AEMDEPEWVGNGMDKFESAECEKRFKAR-KVLQWAEEYSLQDND--ETILAVTRD 789 ++ + A P + +K + R A + L + Y + + + TR Sbjct: 755 VFGENANETVPAPLRARDEKAQGEAMADRSMANWRSLNLLQGYERSGSQWVDDTITPTRL 814 Query: 790 GEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNV----PFTWKRSFSEV- 844 GE S+ + G++L+ + +DLS E +++ RV + E Sbjct: 815 GE-SVNVRLAQF--EGQKLVPLRGPDDLSWELSQLSISGGRVKFVDDHGEELNKCIEEAQ 871 Query: 845 ---VDEDGLLWLEGKQNLDGWVWQGNS-------IVITYTGDEGMT 880 D+ L + DG W GN+ + + Y G+ Sbjct: 872 VSMRDKGKWSVLIPMGSDDGVNWTGNAKNKHNDRVDLAYDARIGLR 917 >UniRef50_B8GIV7 CRISPR-associated helicase Cas3 n=1 Tax=Methanosphaerula palustris E1-9c RepID=B8GIV7_METPE Length = 912 Score = 594 bits (1531), Expect = e-168, Method: Composition-based stats. Identities = 250/890 (28%), Positives = 380/890 (42%), Gaps = 79/890 (8%) Query: 7 ICHYWGKSSKS--LTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVK 64 YWGK+ + KG HLL+YHCLDVAAV +Q +L + F + +V Sbjct: 8 YYSYWGKAQREGEPEKGAGYHLLVYHCLDVAAVGQKLLEQDPLLMHRFTALTGFNDDQVL 67 Query: 65 AWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQ 124 + F +ALHD+GKF RFQ + L G H + LY F Q Sbjct: 68 HLIPFLLALHDLGKFSDRFQNLKPDLME-------LLQGNRGSRRYPIRHDSMALYLFEQ 120 Query: 125 DSLSEQSLGDFFSFFDAAPHPYESWF----PWVEAVTGHHGFILHSQDQDKSRWEMPASL 180 D ++F P+ + WF P AV+GHHG E + Sbjct: 121 DIRDLAWKKNWFWMDHDLPYAEDEWFEIFAPLFRAVSGHHGEPP-------QHDETVSVD 173 Query: 181 ASYAAQDKQAREEWISVLEALFLTPAGLSINDIP-------PDCSSLLAGFCSLADWLGS 233 + + D+ A ++ L L + S LLAG +L+DWLGS Sbjct: 174 SLFLDGDRAAARDFAVQAATLLLGSGSYPPIEYSEGWFEQFSTASWLLAGLVTLSDWLGS 233 Query: 234 WTTTNTFLFNEDAPSDINALRTYFQDRQQD-ASRVLELSGLVSNKRCYE------GVHAL 286 T F ++ L Y+++ Q A + +G++ L Sbjct: 234 NRTFFPF------QTEAMDLAVYWKNFAQKGAEDAVRDAGVLPATVSSNCGMAGLFPPDL 287 Query: 287 LDNGYQPRQLQVLVDA--LPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFAL 344 P +Q + + L P LT+IE TG GKTE AL A +L++ + + L Sbjct: 288 PPKITSPSPIQTYLSSCSLTPEPRLTIIEETTGGGKTEAALVLAHRLMNYGCGEGIFMGL 347 Query: 345 PTQATANAMLTRMEASASHLFSSP---NLILAHGNSRFNHLFQSIK------SRAITEQG 395 PT ATA+++ R+ + +++ +++LA + LF+ S + G Sbjct: 348 PTMATADSLYGRIAQTYQRMYTGDQRASVVLATSARDLSDLFKKSVLPPGQWSHEQYKPG 407 Query: 396 QEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVH 455 +E A C WL+Q+ KK L Q+GV TIDQ L++VLP +H+ +R LG+ R++LIVDEVH Sbjct: 408 EETASATCTIWLAQNRKKALLAQVGVGTIDQALMAVLPFRHQSLRLLGLARNILIVDEVH 467 Query: 456 AYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTY---GLHTDPVENNSAYP 512 AYD YM+ +L +LK QA GGS ILLSATL M Q+Q L + + YP Sbjct: 468 AYDPYMHTVLCGLLKFQAAFGGSAILLSATLTMAQRQDLTSAFCAGLGRRAKTLTDETYP 527 Query: 513 LINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCL 572 LI + + ++ + + + +LE+++ AA G VC Sbjct: 528 LITMATAQDVTETPIDSSAARV--------RTVRVQMVDDSADVLEQIVRAAGDGRCVCW 579 Query: 573 ICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRN--VGR 630 + N +D A + L ++ + LFHARF L DR + E +V+ FGK G Sbjct: 580 VRNTIDDAINAFNELNTRLESR-QVLLFHARFALGDRLDIEKKVLDTFGKESLDPIRRGM 638 Query: 631 ILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATIL--LP 688 +LVATQVVEQSLD+DFD +IT P DL+ QR GRLHRH R R + +A L P Sbjct: 639 VLVATQVVEQSLDLDFDLMITDLAPMDLIIQRAGRLHRHPRGDRGEAVMVVLAPPLTRTP 698 Query: 689 DGEGY----GRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDD--AEMDE 742 D + Y + ++Y N +W T Q ++ + PD R ++ ++ D Sbjct: 699 DPDWYKRVFPKGGYVYPNHGQLWLTAQLLD--TKGKIVMPDGARDLIEGVFGDGAQIRIP 756 Query: 743 PEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDND--ETILAVTRDGEMSLPLLPYV 800 + + + L+ ++ Y E TR G+++ L+ Sbjct: 757 LSLLPREVLVDGKKRGDISIARLNTLEVSDGYRRTPTQWVEEAHVSTRLGQLTSTLVLAR 816 Query: 801 QTSSGKQL--LDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDED 848 + Q DLS E + + + D+ Sbjct: 817 WDGTTLTPWYSSNQNAWDLSQVHIAEKKVASAAVFEGELGAAVKRLEDQI 866 >UniRef50_B4RSJ9 CRISPR-associated helicase Cas3 n=3 Tax=Gammaproteobacteria RepID=B4RSJ9_ALTMD Length = 915 Score = 594 bits (1531), Expect = e-168, Method: Composition-based stats. Identities = 238/854 (27%), Positives = 378/854 (44%), Gaps = 77/854 (9%) Query: 7 ICHYWGKSSKSLTK-GNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKA 65 YWGK+ K + G D HLL YHCLDVAAV W D L + + + K+ Sbjct: 8 YFRYWGKAKKDSEQSGADYHLLPYHCLDVAAVCYEWLDTDTKLAGELSDYLAIPRDQFKS 67 Query: 66 WLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFN-- 123 + FF+A+HD+GKF FQ + KL N + + H G +++ Sbjct: 68 LMSFFMAMHDLGKFASAFQALYSSDSTKLI----LTNSRKSYDGSHYRHDRLGTWFWRKL 123 Query: 124 QDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASY 183 + + E+ + + ++ + GHHG + + P Sbjct: 124 RQQICERCTEGHGLNRRQLKYLTKPLNIIMDCMLGHHGVPVELDE--------PGIEGFT 175 Query: 184 AAQDKQAREEWISVLEALFLTPAGLSIND-------IPPDCSSLLAGFCSLADWLGSWTT 236 +Q+ A E + L LF + S +AG L DW+GS Sbjct: 176 ESQNLSASEAFTLDLITLFQPEFTEVMIQNDSDWLVKLKQVSWHIAGIAVLCDWIGSDQA 235 Query: 237 TNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQL 296 ++ SD L Y+Q ++ A R LE L+ + + G+ P L Sbjct: 236 DFPYV------SDEMPLDIYWQTAKKQAKRALESKQLIRSFNVAPFLSVENSFGFSPTPL 289 Query: 297 QVLVD--ALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAML 354 Q + + P L ++E TG+GKTE AL A +L+++ +A F LPT AT+NAM Sbjct: 290 QSWAEKVEITDTPQLFILEDVTGAGKTEAALTLAHRLMEKGVASGFYFGLPTMATSNAMY 349 Query: 355 TRMEASASHLFS----SPNLILAHGNSRFNHLFQ-----SIKSRAITEQGQEEAWVQCCQ 405 R+ ++ P+++LAHG N LFQ S K + + A +C + Sbjct: 350 KRVTEHYLSMYESVAKKPSIVLAHGAREMNPLFQQTVITSGKDNSDYNAEDKTALAECHR 409 Query: 406 WLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLL 465 WL+ S KK L +GV TIDQ L++VLP +H+ +R LG+ VL+ DEVHA D YM LL Sbjct: 410 WLADSRKKALLAPVGVGTIDQALLAVLPKRHQSLRLLGLHNKVLVFDEVHAADEYMFELL 469 Query: 466 EAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHT------DPVENNSAYPLINWRGV 519 E +LK GGSVILL+ATLP+KQ++KL++ + + T + S +PL V Sbjct: 470 EGLLKLHLHQGGSVILLTATLPLKQRKKLVEIWQVATGSEVILPKKTSFSDFPLATH--V 527 Query: 520 NGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDV 579 + + H +P R ++ + + + + + +ER+I +G V + N VD Sbjct: 528 APGTKNPVQEH--TMPSREAVS-RAVTVTFLHDEASCIERIINTIESGVCVVWVRNSVDD 584 Query: 580 AQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGK--RNVGRILVATQV 637 A Y L + D LFH+RFTLNDR E +V++ FGK+ G++L+ATQV Sbjct: 585 ALAAYSTLSTQMSNPDDCILFHSRFTLNDRNLIEAKVLNVFGKHADAGSRAGKVLIATQV 644 Query: 638 VEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKY-------RPAGFEIPVATILLPDG 690 ++SLD D D +I+ CP D L QR GRLHRH R +P P + P Sbjct: 645 FQESLDADCDLMISDICPIDDLIQRAGRLHRHSRDKQGKFTPGKPDQRGQPELIVHAPHW 704 Query: 691 E----------GYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDA-- 738 + ++Y + +W + + +L ++ P+ RQ ++++Y D Sbjct: 705 SDKPGEDWVRQDFRNTSYVYPSAGRLWLGMRELLKL--GTMRMPENARQLIEAVYSDEGR 762 Query: 739 EMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQD----NDETILAVTRDGEMSL 794 E + + + L W Y + + ++ + TR E Sbjct: 763 EQIPASLIAQEQRVMGDERARENQAFARKLNWETGYQITNRGRWEEDEVEINTRLSEREE 822 Query: 795 PLLPYVQTSSGKQL 808 + ++ + ++L Sbjct: 823 VQIVLLKVDAQERL 836 >UniRef50_Q2JWC1 CRISPR-associated helicase Cas3 n=2 Tax=Chroococcales RepID=Q2JWC1_SYNJA Length = 893 Score = 594 bits (1531), Expect = e-168, Method: Composition-based stats. Identities = 248/916 (27%), Positives = 366/916 (39%), Gaps = 104/916 (11%) Query: 9 HYWGKSSKSLTKGND---IHLLIYHCLDVAAVADCWWDQ--SVVLQNTFCRNEMLSKQRV 63 +W K+ + + + H ++ H D AAVA S + + L + Sbjct: 5 RFWAKTGQGQLREDGRPLYHPVLCHLADTAAVAMEIVQTYLSPLARQQLSVGLGLEGDPL 64 Query: 64 KAWLLFFIALHDIGKFDIRFQYKSAESWLKL-NPATPSLNGPSTQMCRKFNHGAAGLYWF 122 + F HD+GK FQ++ +E L L + HG Sbjct: 65 ARFCGFMAGCHDLGKVSPAFQFQVSEVGKALVGSRLYGLWRSYPNTGQAAPHGTVTAATL 124 Query: 123 NQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLAS 182 F + P + V GHHGF QD Sbjct: 125 P-------------GFLEELGLPKKLAQKLSAIVGGHHGFFPGLQD------------IQ 159 Query: 183 YAAQDKQAREEWISVLEALFLT---PAGLSINDIPPDCS----SLLAGFCSLADWLGSWT 235 + D R EWI +F GL IP CS +LAG ++ADW+ S T Sbjct: 160 SLSPDDVGRGEWIPFRREIFQQLQDFVGLKREGIPGRCSNSAAMILAGLATVADWIASNT 219 Query: 236 TTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYE-GVHALLDNGYQPR 294 + + +E TY Q + A + L+ G ++ AL D +PR Sbjct: 220 ESFPYANDE-------PFETYAQGIAEKAQQALKAQGWIAPPTDSPLTFQALFDFISEPR 272 Query: 295 QLQVLVDALPVA---PGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATAN 351 LQ+ L P L ++EA G GKTE AL A L Q A LPTQAT+N Sbjct: 273 PLQLAAINLKDRLAPPCLVIVEAAMGEGKTEAALYLADHLQHQAGAGGFYIGLPTQATSN 332 Query: 352 AMLTRMEASASHLFSSP--NLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQ 409 AM R+++ + NL L+HG + + R QE V +W + Sbjct: 333 AMFERVKSFLQKRYPDAIVNLTLSHGAAALKEDYLDTVCRLDQVYDQEGKGVFASEWHT- 391 Query: 410 SNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVL 469 + K+ L GV T DQ L+ + +H+F+R G+ ++I+DE+HAYD Y + LLE L Sbjct: 392 ARKRTLLSPYGVGTPDQALMGAVRARHQFVRLFGLAGRIIILDEIHAYDLYTSTLLERFL 451 Query: 470 KAQADVGGSVILLSATLPMKQKQKLLDTYG---LHTDPVENNSAYPLINWRGVNGAQRFD 526 + A +G VI LSATLP +Q+LL Y P N+ YP I A Sbjct: 452 EWAAVLGSPVIALSATLPAGTRQRLLAAYARGCGQPPPDSPNAPYPRITALASGAALAQS 511 Query: 527 LLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQR 586 + + + D E + G V +IC+ VD AQ +Q Sbjct: 512 FAPSEHV--------RRQLGIRWVRDDQWPAELSQVLSKGGGCVAVICSTVDRAQWVFQH 563 Query: 587 LKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGK-RNVGRILVATQVVEQSLDVD 645 L++ + ++ LFH RF DR + E + + FGKNG R +LVATQV+EQSLDVD Sbjct: 564 LQKYFPPE-ELGLFHGRFLFKDREQIEKQCLERFGKNGHLRPSRFVLVATQVIEQSLDVD 622 Query: 646 FDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPD-----GEGYGRHEHIY 700 FD +I+ P DLL QR GRLHRH R RP P I+ P+ + IY Sbjct: 623 FDLMISDPAPIDLLLQRSGRLHRHPRDKRPPELSAPYLWIVEPELAEEGKANFRESSSIY 682 Query: 701 SNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVG--------NGMDK 752 ++ R+ + E L P+ ++S+Y D EM PE + ++K Sbjct: 683 DRH-ILLRSWLALRERCNVQL--PEEIDDLIESVY-DLEMPIPEALETVHAQDWRESLEK 738 Query: 753 FESAECE-KRFKARKVLQ-------WAEEYSL---QDNDETILAVTRDGEMSLPLLPYVQ 801 ++ E + KR +A +V E+++ +D++ TI AVTR G+ S+ + Q Sbjct: 739 YKVEEEDAKRSRANEVKIPPPNADVRPEQFTYLKKEDDESTIAAVTRLGQPSVATIFLQQ 798 Query: 802 TSSG---KQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWL----- 853 +G D E L + V + + + E+ W Sbjct: 799 GKTGLVFPGSHDPVDLETEPSLPMIRRLLAHSVRIASRQELVKELLRRENPKTWTSALLR 858 Query: 854 ---EGKQNLDGWVWQG 866 N +GW G Sbjct: 859 NCRYVVLNAEGWAQVG 874 >UniRef50_Q314I0 CRISPR-associated helicase Cas3, core n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q314I0_DESDG Length = 892 Score = 594 bits (1530), Expect = e-168, Method: Composition-based stats. Identities = 287/932 (30%), Positives = 412/932 (44%), Gaps = 110/932 (11%) Query: 6 YICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKA 65 YW K +++ +HLL YH LDVAAV D + + VLQ CR LS ++A Sbjct: 9 SYYGYWAKFDRNIAPY--VHLLPYHLLDVAAVYDSLLNHTPVLQRRICRLSQLSPDTIRA 66 Query: 66 WLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQD 125 L LHD+GKF FQ + E+ L P T + +H A G + ++ Sbjct: 67 LLRTLAVLHDLGKFSQIFQEQQPEARAILTDT------PPTGLGGNTHHTALGQWLYS-- 118 Query: 126 SLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAA 185 S+ Q+L D + F + ++ P V A GHHG + S+ + Sbjct: 119 SVVRQALEDCHAVF--SEDAMDTMRPLVNATFGHHGTP----------EQESGSIRHFRR 166 Query: 186 QDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNED 245 + A+ L S L AG +ADWLGS T + Sbjct: 167 ATEHAKAFATEAANFLLPPIEIPESEQAFRALSWLHAGLMVVADWLGSNTRWFPY----- 221 Query: 246 APSDINALRTYF-QDRQQDASRVLELSGLVS----NKRCYEGVHALLDNGYQPRQLQVLV 300 ++ L TY+ + A R + SG+ + KR + + L P LQ Sbjct: 222 -HAEQMPLETYWNEIALPRADRAVRESGIPAAPPHPKRDFTRLLPHLPANAGPSPLQSHA 280 Query: 301 ---DALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRM 357 P L + E TG GKTE AL A L+ AD ALPT ATAN M R+ Sbjct: 281 LYDAIRSSGPQLHIFEDMTGGGKTEAALLCAHGLMTMSEADGFYIALPTMATANGMYARL 340 Query: 358 EASASHLFSSP---------NLILAHGNSRFNHLFQSIKSRAITE---QGQEEAWVQCCQ 405 S LF S +LILAHG + LF S A E Q + C Sbjct: 341 AQSYRALFGSDKDSAQDSPISLILAHGARNLSDLFMSGVPDANAESAIDPQSDGRAYCAT 400 Query: 406 WLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLL 465 WL+ S KK L GV TIDQ L++VLP +H+ +R LG+ R+VL++DEVHAYD Y LL Sbjct: 401 WLADSRKKALLSPCGVGTIDQALLAVLPARHQCLRLLGLARNVLVIDEVHAYDEYTGSLL 460 Query: 466 EAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRF 525 +A+L+ A +GGS ILLSATL + +Q L + + YP + Sbjct: 461 QALLRFHAALGGSAILLSATLTRRIRQNLAAAF-------CEGAGYPAPTLNVDDFPLAT 513 Query: 526 DLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQ 585 +H + + + I + + M + ++ AG C I N VD A+ Y+ Sbjct: 514 TADSHGMRETAFPATRRSTIHVKLTADENAMYKALLETRAAGGCACWIRNTVDQAREAYE 573 Query: 586 RLKELNN-TQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGR--ILVATQVVEQSL 642 RL+E + + DI LFHARF + DR+ E RV++ FGKN ++ R ILVATQVVEQSL Sbjct: 574 RLREQHGVPEKDIILFHARFAMADRQHIEQRVLALFGKNSTQDDRRSKILVATQVVEQSL 633 Query: 643 DVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEG---------- 692 D+DFD L + H P +LL QR GR HRH+R RP G E P +L P Sbjct: 634 DLDFDQLNSDHAPMELLIQRGGRCHRHNRN-RPRGLESPRMLVLAPQARNDAPQDWYASV 692 Query: 693 YGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDK 752 G+ + +Y +WR + +E++ L PD R+ ++S+YDD E PE + N ++ Sbjct: 693 LGKAQFVYPVQAPLWRAAKLLEKVK--QLTLPDDARRLVESVYDDNEF-APESLQNADER 749 Query: 753 FESAECEKRFKAR-KVLQWAEEYSLQ------DNDETILAVTRDGEMSLPLLPYVQT--- 802 + + K+ AR L+ YS+Q ++DE + VTR GE ++ L Sbjct: 750 YLAEALGKKDLARFNTLKLEAGYSVQALGRGWEDDECV--VTRLGEETVQLRLLRWDGGQ 807 Query: 803 ---------------SSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDE 847 S ++ G+V LA +P K + V+ + Sbjct: 808 LNLWADGPGMAAACQRSEVRVKKGKVTPSALPPDVVAQLAALMKRMPDKGKWAVPLVLRK 867 Query: 848 DGLLWLEGKQNLDGWVWQGNSIVITYTGDEGM 879 G W+ GW Q ++YT +G+ Sbjct: 868 AGETWI-------GWAEQ----KVSYTSSQGL 888 >UniRef50_B1LQ84 CRISPR-associated helicase Cas3 n=55 Tax=Enterobacteriaceae RepID=B1LQ84_ECOSM Length = 899 Score = 586 bits (1511), Expect = e-165, Method: Composition-based stats. Identities = 221/834 (26%), Positives = 352/834 (42%), Gaps = 80/834 (9%) Query: 7 ICHYWGKSSKSLTKGND-IHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEM-LSKQRVK 64 +WGK+ + G D HLL +H LDVAA+ + + R ++ Sbjct: 17 FFDFWGKTRRGEKDGGDDYHLLCWHSLDVAAMGYLMVKSNCFGLADYFRQLGFADTEQAA 76 Query: 65 AWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQ 124 + + + HDIGKF FQ L L+P G + + K +H G YW Sbjct: 77 QFFAWLLCWHDIGKFARSFQQ------LYLHPQLKVPEG-ARKNYEKISHSTLG-YWLWN 128 Query: 125 DSLSEQSLGDFFSFFDAAPHPYESWFP-WVEAVTGHHGFILHSQDQDKSRWEMPASLASY 183 LSE + +P + W+ TGHHG D L ++ Sbjct: 129 HYLSE--CQELLPSSSLSPRKLKRVMEMWMPMTTGHHGRPPERMD----------ELDNF 176 Query: 184 AAQDKQAREEWISVLEALFLTPA------GLSINDIPPDCSSLLAGFCSLADWLGSWTTT 237 +DK A +++ ++ LF ++ S ++ LADW GS T Sbjct: 177 LPEDKGAARDFLLAIKVLFPLIEIPTFWDDDEGVELIKQLSWYISATVVLADWTGSSTRY 236 Query: 238 NTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQ 297 + + + Y+Q A L + + + G++ L P LQ Sbjct: 237 FPRV------AQTMDIEDYWQKTLVQAQNALTVFPPKAESAPFTGINTLFPFIENPTPLQ 290 Query: 298 VLVDALP---VAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAML 354 V L P L ++E TG+GKTE AL A +L+ A + F LPT ATANAM Sbjct: 291 QKVLDLDISQPGPQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLFFGLPTMATANAMY 350 Query: 355 TRMEASASHLFS---SPNLILAHGNSRFNHLFQSIKSRAI---TEQGQEEAWVQ-CCQWL 407 R+ + +S P+L+LAH F +E+ E+ + Q C W Sbjct: 351 DRLVKTWLAFYSPESRPSLVLAHSARTLMDRFNESLWSGDLVGSEEPDEQTFSQGCAAWF 410 Query: 408 SQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEA 467 + SNKK L +IGV T+DQ +++V+P KH +R LG+ +L+ DE+HA D YM+ +LE Sbjct: 411 ADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEG 470 Query: 468 VLKAQADVGGSVILLSATLPMKQKQKLLDTY-----GLHTDPVENNSAYPLINWRGVNGA 522 +++ QA G SVILLSATL +Q+ KL+ + G P YP + + Sbjct: 471 LIERQARGGNSVILLSATLSQQQRDKLVAAFARGIEGQQEAPFLEKDDYPWLTHVTKSDV 530 Query: 523 QRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQV 582 + + + + + + + R+ +A + G + I N VD A Sbjct: 531 HSHRVATRKDV--------ERSVSVGWLHSEQECIARIASAVSQGKCIAWIRNSVDDAIQ 582 Query: 583 CYQRLKELNN-TQVDIDLFHARFTLNDRREKENRVISNFGKNG-KRNVGRILVATQVVEQ 640 +++L + LFH+RF +DR+ E ++ FGK + G++L+ TQV+EQ Sbjct: 583 VHRQLLARGVIPASSLSLFHSRFAFSDRQRIETETLARFGKEDCSQRAGKVLICTQVLEQ 642 Query: 641 SLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRP-------AGFEIPVATILLPDGEGY 693 S+D D D +I+ P DLL QR GRL RH R P IL P + Sbjct: 643 SVDCDLDEMISDLAPVDLLIQRAGRLQRHIRDMNGQLKRDGKDERHPPELLILAPVWDDS 702 Query: 694 GRHEH----------IYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEP 743 E +Y + +W TQ+ + E ++ P + R ++S+Y + + Sbjct: 703 PGDEWFGSAMRNSAFVYPDHGRIWLTQRVLRE--QGAIQMPHSARLLIESVYGEDVVMPE 760 Query: 744 EWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETIL-AVTRDGEMSLPL 796 + + ++ C++ + VL + Y+ ND TR E S+ L Sbjct: 761 GFARSEQEQVGKYYCDRAMAKKFVLNFRPGYAANINDYLPEKLSTRLAEESVSL 814 >UniRef50_Q04QC1 Helicase n=2 Tax=Leptospira borgpetersenii serovar Hardjo-bovis RepID=Q04QC1_LEPBJ Length = 931 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 243/954 (25%), Positives = 389/954 (40%), Gaps = 105/954 (11%) Query: 4 FKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRV 63 K YWGK+ K + +LL YHC DVAAV + + Q+ L F R + Sbjct: 5 VKSYYKYWGKADK----EGNYYLLAYHCFDVAAVGEVYLSQNETLCTHFSRKLGIDPITF 60 Query: 64 KAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFN 123 K +FF+ LHD+GKF FQ L+ + P + H + G ++ Sbjct: 61 KNLFVFFLVLHDLGKFSDCFQSLIPNVKSALDNSNPPIG------SYSIRHDSLGYIFWG 114 Query: 124 QDSLSEQSLGDFFSFFDAAPHP--------------YESWFPWVEAVTGHHGFILHSQDQ 169 + L ++ G++ E + VTGHHG Sbjct: 115 KWILKDERFGNYDGLLTEQNWLSWNGLRSSKDKSYFTEFLDVLIRCVTGHHGRPPSKNGY 174 Query: 170 DKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPP------DCSSLLAG 223 + + + D+ A ++ + + L+P D S LAG Sbjct: 175 SGQTA--VSLDSHFTEADRSAALDFSKEVNRI-LSPNLNFDGDFKTLYNSALRISFWLAG 231 Query: 224 FCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGV 283 L DW+GS + P D+ Y + + A + SGL+ +K + Sbjct: 232 LSVLCDWIGSNAEIFKYH---QTPIDLEEY--YTKISLKRALDAINRSGLLPSKITFNKD 286 Query: 284 HA-LLDNGYQPRQLQVLVDA--LPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSV 340 H + + +P LQ +P +P L ++E TGSGKTE AL +L+ + Sbjct: 287 HFRIFEYLREPTPLQKFCSEVAIPDSPSLFILEDVTGSGKTEAALILTHRLMQKSAYSGF 346 Query: 341 IFALPTQATANAMLTRMEASASHLFSS---PNLILAHGNSRFNHLFQSIK---------- 387 LPT ATAN M RM +L++ P+L+LAHG + FQS Sbjct: 347 YVGLPTMATANGMYQRMSGVYRNLYTKESIPSLVLAHGARNLSDSFQSSVISDNAILTDR 406 Query: 388 --SRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIG 445 S + + +E A C WLS + KK L GV TIDQ L+S+L K + +R G+ Sbjct: 407 NYSLQLDKDPEESASAICNVWLSDNQKKSLLADAGVGTIDQALLSILSTKFQSLRMFGLS 466 Query: 446 RSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTD-- 503 R VLI+DEVH+YD YM L+ +LKAQA +G SVILLSATLP ++ +++ L D Sbjct: 467 RKVLILDEVHSYDPYMVELICCLLKAQAKIGASVILLSATLPKILRKTFSESFALGLDTE 526 Query: 504 -PVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIA 562 + YPL++ ++ +++ + +++ + +L++++ Sbjct: 527 LQDLKSVEYPLVSLISDRSEVEEIPISTRKEVSRKLNVKF-------LFNQEQVLQKILE 579 Query: 563 AANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGK 622 +N G VC I N V A + L Q + LFHARF + DR E++++ NFG Sbjct: 580 MSNQGRCVCWIRNTVSDASQAFSFLHSKLGDQ--VILFHARFVMGDRLSIESQILENFGV 637 Query: 623 NGKRN--VGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFE- 679 +N G+++VATQVVEQSLD+DFD +IT P DL+ QR GRLHRH R + Sbjct: 638 RSDQNSRKGKVVVATQVVEQSLDLDFDCIITDLAPIDLILQRAGRLHRHCRDIFGNAKQG 697 Query: 680 -----IPVATILLPDG----------EGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFP 724 P+ I P+ + +YS+ +W T + ++E G + P Sbjct: 698 LDERGEPILWIFSPEPIEDPTSNWFSQFSRGGSMVYSDHGRLWLTAKLLQERKGWRM--P 755 Query: 725 DAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETI- 783 + R ++S+Y + N + + A + Y N+ + Sbjct: 756 EDARNLIESVYGIDVEIPQSFRENQFKVKNDKKKLESAAALSTIHLELGYDSTLNETSWD 815 Query: 784 --LAVTRDGEM--SLPLLPYVQTSSGKQLLDGQVYEDLS------HEQQYEALALNRVNV 833 TR G S +L + + G + + + + + +N Sbjct: 816 DSKFSTRYGIDNSSKAVLAKFVSDRLVPWISGTTRDWQNSELPVPNYLVEKEVIFENLNF 875 Query: 834 PFTWKRSFSEVVDEDGL-LWLEGKQNLDGWVWQGNS-----IVITYTGDEGMTR 881 + D+ + L + W + + + TY G + Sbjct: 876 SEVIFNCKKNLPDKGKHCVLLPLFYTNNSWRGKALNKKNEVVSFTYDERFGFRK 929 >UniRef50_D1CAJ4 CRISPR-associated helicase Cas3 n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1CAJ4_SPHTD Length = 936 Score = 584 bits (1504), Expect = e-165, Method: Composition-based stats. Identities = 238/916 (25%), Positives = 370/916 (40%), Gaps = 108/916 (11%) Query: 11 WGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQ--SVVLQNTFCRNEMLSKQRVKAWLL 68 W K S+ H L+ H LDVA VA WD S ++ LS+ W+ Sbjct: 10 WAKRSRVP-GDPAYHPLLCHLLDVALVARVMWDDVLSPAVRRYLAAAFGLSETDAGPWIA 68 Query: 69 FFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLS 128 F LHD+GK FQ + L A L R HG+ + ++ Sbjct: 69 FLTGLHDLGKASPAFQLTWTAAHSLLRDAGFPL-PQRPLDPRATPHGSVTAATLPEILVA 127 Query: 129 EQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDK 188 E L + + + GHHG + D ++A Sbjct: 128 EFQLDNQLARRLGT------------VIGGHHGIFPRAHDLCDM-----PTVAVGRGPWN 170 Query: 189 QAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPS 248 AR + L + P I + LAG S+ADW+GS F + A + Sbjct: 171 TARAALVRELASHIGVPRDAVPRGIDNPAAMTLAGLVSVADWIGSDDLIFPFAAADAAAA 230 Query: 249 DINALRTYFQDRQQDASRVL-ELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVA- 306 R Y++ + A++ + L+ L S + L P LQ V L Sbjct: 231 SSLDFRNYYRQAEGQAAQAMARLAWLKSRAGAEPRAFSDLFPHITPNALQEAVIELARDL 290 Query: 307 --PGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHL 364 P L ++EAP G GKTE AL A + A+PTQAT+N M R+ Sbjct: 291 PHPSLVIVEAPMGEGKTEAALFLADHMNAVGGNRGTYVAMPTQATSNQMFGRVRDYLIPR 350 Query: 365 FSSP--NLILAHGNSRFNHLFQSIKSRAITEQGQEEAW----------VQCCQWLSQSNK 412 F + NL L HG++ N F +++ R E V +W + K Sbjct: 351 FDTETVNLQLLHGHAALNAEFAALRQRTDALLSPREDDADQDPEIASGVVAAEWFTY-RK 409 Query: 413 KVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQ 472 + L GV TIDQ L++VL +H F+R G+ +++DEVHAYDTYM+ LLE +L+ Sbjct: 410 RGLLSPFGVGTIDQALLAVLQTRHVFVRLFGLAGKTVVIDEVHAYDTYMSTLLERLLEWL 469 Query: 473 ADVGGSVILLSATLPMKQKQKLLDTYGLHTD------PVENNSAYPLINWRGVNGAQRFD 526 A +G VILLSATLP ++ L Y D + ++ YP + W NG Sbjct: 470 AALGSPVILLSATLPDARRATLARAYAAGLDTPSLEPRTDPSAVYPRVTWVTRNGIN-SR 528 Query: 527 LLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAA-NAGAQVCLICNLVDVAQVCYQ 585 + + I L + + L + + AA G ++CN V AQ YQ Sbjct: 529 HVPASARTTRSVGIGWVDGRLPETPEEPFPLGKQLEAALEPGGCAVVVCNTVGRAQAVYQ 588 Query: 586 RLKEL-----NNTQVDIDLFHARFTLNDRREKENRVISNFGKNG------------KRNV 628 LK ++ + ++DL HARF +++R+ +E R + FGK G +R Sbjct: 589 ALKRYFQGVADDGEPELDLLHARFLVDERQHREQRALRRFGKPGGVVTTEEGTIQVRRPK 648 Query: 629 GRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLP 688 +L+ATQ+VEQSLD+DFD ++T PADL+ QR GRLHRH R RP G E+P I P Sbjct: 649 RAVLIATQIVEQSLDLDFDLMVTDLAPADLVLQRAGRLHRHRRDARPRGLEVPRLWICRP 708 Query: 689 DG-----EGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDA--EMD 741 + + + + R+ + + + ++ PD ++++YDD Sbjct: 709 EHITEGVPVFDHGTTAVYDAHALLRSWLVLRDRD--AIAIPDEIPDLIEAVYDDRPCPAT 766 Query: 742 EPEWVGNGMDKFES--AECEKRFKARKVLQWAEEY----------------SLQDNDETI 783 EP V ++ E ++ A ++W + D + Sbjct: 767 EPPTVRAAWEETRQRYEELAEKDAAEAAVRWIKRPGAGGFIWQMTANARAEDAPDFHQAH 826 Query: 784 LAVTRDGEMSLPLLPYVQ-------TSSGKQLLDGQVYEDLSHEQQ--YEALALNRVNV- 833 A+TR S+ ++ +G++++D L+ ++ ++ L+ V Sbjct: 827 QALTRLTPPSVSVVCLFDVDGRLALDPAGREVIDLSEPPSLNLTRRLLARSVTLSDRRVV 886 Query: 834 --------PFTWKRSF 841 P W+ S Sbjct: 887 PELLTTDPPTAWRESA 902 >UniRef50_D1CGD0 CRISPR-associated helicase Cas3 n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CGD0_THET1 Length = 944 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 230/922 (24%), Positives = 358/922 (38%), Gaps = 107/922 (11%) Query: 10 YWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQ--SVVLQNTFCRNEMLSKQRVKAWL 67 +W K H L+ H LDVAAV W + + + ++ + WL Sbjct: 34 FWAK--WGSGPDLGWHPLLCHMLDVAAVTLQMWRRVLPAAWKARISGVLGVGQEDAERWL 91 Query: 68 LFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSL 127 FF HDIGK FQ + + A + + HG ++ Sbjct: 92 AFFAGGHDIGKASPAFQLQLRPEQGRELVARRLRDAGLPLFNARAPHGTISA------NV 145 Query: 128 SEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQD 187 E L D F + AV GHHGF+ D+ R ++ + D Sbjct: 146 LETVLADVFGLSGRSAR------WVAFAVGGHHGFVP---SYDEVRRDLDQQAVGWGMWD 196 Query: 188 KQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAP 247 ARE + L P + +LAG S+ADW+GS + Sbjct: 197 -AAREVLLCRLADALGLPGSSRPTVESTPDAFMLAGLVSVADWIGSNEEYFPYAAQSALQ 255 Query: 248 SDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVH--ALLDNGYQPRQLQVLVDALP- 304 Y + + A R + G V + + L QP +Q + L Sbjct: 256 VPQLDAEAYLERAMRQAERAMASLGWVGWRPASGSMRLTELFPYIRQPTTVQAAAEELAG 315 Query: 305 --VAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASAS 362 +P +T+IEAP G GKTE A+ A FALPT AT+N M R+ Sbjct: 316 EVKSPSITIIEAPMGEGKTEAAMLLADTFSTAHGMSGCYFALPTMATSNQMFGRVTDYLR 375 Query: 363 HLFSSPNLI--LAHGNSRFNHLFQSIKSRA----------ITEQGQEE-AWVQCCQWLSQ 409 H + ++ L HG+S + L Q ++ + G E+ V QW ++ Sbjct: 376 HRYPEDVVVVNLVHGHSDLSALLQELRQKGEEIFQLQGVYDEALGDEQLGAVVAGQWFTR 435 Query: 410 SNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVL 469 K+ L GV T+DQ L++VL VKH F+R + +IVDEVHAYD YM LL +L Sbjct: 436 G-KRALLPPYGVGTVDQALLAVLQVKHVFVRLFALSTKTVIVDEVHAYDVYMTTLLHRLL 494 Query: 470 KAQADVGGSVILLSATLPMKQKQKLLDTY----GLHTDPVENNSAYPLINWRGVNGAQRF 525 + + V++LSATLP ++++L+ Y G + + YP I + + Sbjct: 495 EWLGALSVPVVVLSATLPSARRRELVKAYARGAGWQAERDLPPAGYPRITYAAAEDVRGI 554 Query: 526 DLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQ 585 P S + + + + + A + G +ICN V AQ Y Sbjct: 555 HFA------PSEASRRKVALRWVSAPEHEALGQLLAEALSQGGCAAIICNTVPRAQALYS 608 Query: 586 RLKELNN-----TQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQ 640 L+E+ ++DL HAR+ +R +E R + F +NG+R ILVATQV+EQ Sbjct: 609 ALREVFPGLAEDGMPELDLLHARYPYEEREVREARTLGRFSRNGRRPHRAILVATQVIEQ 668 Query: 641 SLDVDFDWLITQHCPADLLFQRLGRLHRH--HRKYRPAGFEIPVATILLP----DGEGYG 694 SLD+DFD ++T P DL+ QR+GRLHRH H RP P ++ P D + Sbjct: 669 SLDLDFDLMVTDLAPVDLVLQRMGRLHRHPVHDPLRPERLRSPELWVVSPQVMGDVPIFD 728 Query: 695 RHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFE 754 R + + R+ + + + +L P+ + ++ +Y D + P+ + Sbjct: 729 RGSASVYDEHTLLRSWLALRDRD--TLQLPEDIEELVEQVYSDGRV--PQGASEELRSLW 784 Query: 755 SAECEKRFKARKVLQWAEEYSLQ--------------DNDETIL-------AVTRDGEMS 793 + + K + +Y +E A+TR E S Sbjct: 785 ERTFKAQQKVLREDSLQAKYRYIKGPGYNSIWGIVTASVEEDAPELHPALQALTRLAEPS 844 Query: 794 LPLLPYVQTSSGKQLLDGQVYE-------DLSHEQQYEALALN---------RVNVPFTW 837 + + V S G L DG + ++ ++A+ V VP W Sbjct: 845 VSAVCLVAGSGGPCLPDGTPVDLDTPPDAAMAERLLRRSVAITDARVLDPLLDVPVPKGW 904 Query: 838 KRSF------SEVVDEDGLLWL 853 +RS V D G + Sbjct: 905 ERSSLLRGYRPLVFDASGRAMV 926 >UniRef50_C1XFZ7 CRISPR-associated helicase Cas3 n=3 Tax=Meiothermus RepID=C1XFZ7_MEIRU Length = 899 Score = 579 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 226/808 (27%), Positives = 341/808 (42%), Gaps = 65/808 (8%) Query: 1 MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQ-SVVLQNTFCRNEMLS 59 M + W KS + +G H LI H LDVAA A+ ++ + + L Sbjct: 1 MSLSETARALWAKSDRGREQGA-WHPLIAHLLDVAACAEAILEREPPKTLELYAHDLSLE 59 Query: 60 KQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGL 119 Q+ KAW+ LHDIGK FQ K E +L + + T +H Sbjct: 60 PQQAKAWVCALAGLHDIGKASPAFQQKWPEGKERLWATGLTWSSDPTPPPHDLSHSIISE 119 Query: 120 YWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPAS 179 + +A Y + AV HHGF D DK+ + Sbjct: 120 VVLPE-------------LLEARGWKYRAAQNVAAAVGEHHGFRATRGDLDKATTREKGN 166 Query: 180 LASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNT 239 A + R E + + + LAG S ADW+GS + Sbjct: 167 -----ANWDEVRRELFEAVLEVLGVGEAPKVKLYGGAAFERLAGLTSFADWIGSSLDFHP 221 Query: 240 FLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLD---------NG 290 + L Y+++ + A++ L+ G K +L + Sbjct: 222 L---------GDDLAGYYREAKARAAQKLDGIGWFQRKTLMPEPQSLEEVFAYLGSPEAP 272 Query: 291 YQPRQLQVLVDALPVA---PGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQ 347 ++ R LQ ++ L P L ++EAP G GKTE A +L + ALPTQ Sbjct: 273 FRARPLQAAIERLLEGVDCPALLLVEAPMGEGKTEAAFYAHLRLQAANGHRGMYVALPTQ 332 Query: 348 ATANAMLTRMEASASHLFSSP--NLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQ 405 AT N M R +A S +L L HG S +Q I+ R + + +EE V+ Sbjct: 333 ATGNLMFERAKAFLDRWGQSRKLDLQLLHGASELVEAYQEIRVRPNSPEEREEG-VEAQV 391 Query: 406 WLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLL 465 W S K+ L + V T+DQ L+ +LP KH+F+R G+G V+++DEVHAYDTY +GL+ Sbjct: 392 WFS-HRKRGLLSEYAVGTVDQALLGILPTKHQFVRLWGLGNRVVVLDEVHAYDTYTSGLI 450 Query: 466 EAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRF 525 E +++ + SV+L+SATLP +++ LL +G + + + YP I + Sbjct: 451 EMLVRWLRALDSSVVLMSATLPRAKRENLLRAFG--AEKITEDKPYPRITRVVKDN---- 504 Query: 526 DLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQ 585 P Q A L + E+ + A G V I N V AQ Y+ Sbjct: 505 ---PMPVVETFEACKQLTLQLRALPLDLEAIAEQALEQARRGGCVACIVNTVQRAQELYR 561 Query: 586 RLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVD 645 L N+ V++ LFHAR+ L +R +E V++ FGK G+R ILVATQVVEQSLD+D Sbjct: 562 ALAG-NSDGVEVYLFHARYPLEERLNREQLVLAKFGKQGQRPKRAILVATQVVEQSLDLD 620 Query: 646 FDWLITQHCPADLLFQRLGRLHRHHRKYRPA-GFEIPVATILLPDGEG---YGRHEHIYS 701 FD + T P DL+ QR GRLHRH R PV + + EG +G E IY Sbjct: 621 FDVMFTDLAPVDLVLQRAGRLHRHARSAEERHSHTEPVLWVAGLECEGVPDFGTAERIYE 680 Query: 702 NVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKR 761 ++ + + N + P + + +Y D E +++ ++ ++ Sbjct: 681 RYVLL---RSWLALRNRTRIGLPGDIDRLVQEVYSDMPQGPSEAWKRALEEAQARMEKRD 737 Query: 762 FKARKVLQWAEEYSLQDNDETILAVTRD 789 + + +A D DET RD Sbjct: 738 ARDQDEAFYAP---FGDPDETGWLEPRD 762 >UniRef50_D2C268 CRISPR-associated helicase Cas3 n=3 Tax=Enterobacteriaceae RepID=D2C268_DICD5 Length = 917 Score = 571 bits (1471), Expect = e-161, Method: Composition-based stats. Identities = 256/935 (27%), Positives = 385/935 (41%), Gaps = 101/935 (10%) Query: 7 ICHYWGKSSKSLTKGND--IHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVK 64 HYWGK+ S ND HLL YHCLDVAA + ++ L ++ Sbjct: 14 YFHYWGKAQSSSENENDAPYHLLPYHCLDVAACGYWLVKHNRFHVRDHMQSLGLEEESAA 73 Query: 65 AWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQ 124 WL +F+A HDIGKF FQ L NP P + ++ H + GL W + Sbjct: 74 LWLAWFLAWHDIGKFARSFQ------RLYQNPDAPLVR--ASGQASPVRHDSLGL-WLWR 124 Query: 125 DSLSEQSLGD--FFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLAS 182 L E+ D + A + W+ + GHHG +D S + Sbjct: 125 HRLYERWEHDASWLPAVSHADKFHYVMDLWLRLMCGHHGQPPLEED---------NSALA 175 Query: 183 YAAQDKQAREEWISVLEALF--LTPAGLSINDIP-----PDCSSLLAGFCSLADWLGSWT 235 + D A + +++ L +F LT +D P S LAG LADW GS Sbjct: 176 FHPDDILAAQAYLTDLRTVFPQLTAFPDEFSDRPWRALLQQRSWSLAGCVVLADWAGSSQ 235 Query: 236 TTNTFLFNEDAPSDINALRTYFQD-RQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPR 294 + S AL Y+++ A + + ++G+ AL QP Sbjct: 236 ADFPYC------SQPMALADYWREYALPQAENAVLRLPAACDVAPFQGMQALFPFITQPT 289 Query: 295 QLQV---LVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATAN 351 LQ VD P L ++E TG+GKTE AL +L+ D + LPT ATAN Sbjct: 290 PLQQQAMTVDISTPGPQLFLLEDVTGAGKTEAALVLTHRLLSAGYGDGLYVGLPTMATAN 349 Query: 352 AMLTRMEASASHLFSS---PNLILAHGNSRFNHLFQSIKSRAITE------QGQEEAWVQ 402 AM R+ + LFS P+L+LAHG F+ A + A Sbjct: 350 AMCRRLSKAYRTLFSEFGLPSLMLAHGARNMVADFRLSLWGAEQTGPVRYGPDEGSASAA 409 Query: 403 CCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMN 462 C QW + S KK L +GV T+DQ L++V+P +H+ +R LG+ +L++DEVHAYD Y + Sbjct: 410 CNQWFADSRKKALLADVGVGTLDQALMAVMPFRHQSLRLLGLSGKILLLDEVHAYDAYTS 469 Query: 463 GLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTD----PVENNSAYPLINWRG 518 LLE +L A GGS I+L+ATL Q+++L+ + + + YP + Sbjct: 470 RLLENLLAFHASQGGSAIILTATLSASQRERLVQAFYRGMQQPAGELAEQAGYPWFTYVN 529 Query: 519 VNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVD 578 + + E + +A + +ER+ A +G VC I N VD Sbjct: 530 AQVLHEWPVETRAEV--------RRTVAVAWLSHRADAIERICQAVASGQCVCWIRNTVD 581 Query: 579 VAQVCYQRLKELNN-TQVDIDLFHARFTLNDRREKENRVISNFGK--NGKRNVGRILVAT 635 A +Q+L + D+ LFH+RF DR E+R I FGK +G+ G++L+AT Sbjct: 582 DAIAAWQQLCQSGEIAADDVLLFHSRFAFCDRMAIEDRAIERFGKHSDGETRRGKVLIAT 641 Query: 636 QVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPA------------GFEIPVA 683 QVVEQSLD+D D +I+ P DLL QR GRL RH R+ + PV Sbjct: 642 QVVEQSLDIDVDVMISDLAPVDLLIQRAGRLQRHIRRADGSCKPPSDDMPARDERAAPVL 701 Query: 684 TILLPD----------GEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDS 733 +L P G +YS+ V+WRTQ + E +L P+ R +DS Sbjct: 702 WVLAPAWQPDAGRDWLGAELRGTGAVYSHQAVLWRTQAILRER--GALRMPEEARLLIDS 759 Query: 734 IYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDND----ETILAVTRD 789 +Y+ ++ A+ L ++ Y + + TR Sbjct: 760 VYEQRIAAPVALEEGDYQAQGKQLGDRTVAAQSSLTFSLGYCVAAAQCGWHDDAELFTRA 819 Query: 790 GEMSLPLLPYVQTSSGKQLL-----DGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEV 844 GE S + + S L +G+ + S + N W ++ Sbjct: 820 GEESQDVYLAWRAESDDALPQPYAGEGEFSWERSRLSVRKRWWQQHQN---GWPTLQGDL 876 Query: 845 VDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGM 879 ++ + + + + Y D G+ Sbjct: 877 LERFRQ--QLHRPGAEVLLLTPGEVAHYYRADTGL 909 >UniRef50_C6C422 CRISPR-associated helicase Cas3 n=6 Tax=Enterobacteriaceae RepID=C6C422_DICDC Length = 912 Score = 568 bits (1464), Expect = e-160, Method: Composition-based stats. Identities = 245/859 (28%), Positives = 358/859 (41%), Gaps = 89/859 (10%) Query: 7 ICHYWGKS--SKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVK 64 HYWGK+ S G HLL YH LDVAA + + L ++ Sbjct: 14 YFHYWGKAQSSSENENGAAYHLLPYHGLDVAACGYWLVKHNRFHARDHLQALGLHEEHAA 73 Query: 65 AWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLY-WFN 123 WL +F+A HDIGKF FQ L NP P + ST H + GL+ W Sbjct: 74 LWLAWFLAWHDIGKFARGFQ------RLYQNPDAPLVQ--STGQVSSARHDSLGLWLWRY 125 Query: 124 QDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASY 183 Q Q D+ A + W+ + GHHG D ++ Sbjct: 126 QLYDRWQQDADWLPTVSRADKFHHVMDLWLRLMCGHHGQPPVEDDNG---------ALAF 176 Query: 184 AAQDKQAREEWISVLEALFLTPAGLSIND-------IPPDCSSLLAGFCSLADWLGSWTT 236 D A + +++ L +F + S LAG LADW+GS Sbjct: 177 HPDDILAAQAYLTDLRTVFPELTAFPDTFSDRRWRALLQQQSWPLAGCVVLADWIGSSQA 236 Query: 237 TNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQL 296 + A +D + Q A + + ++ ++AL QP L Sbjct: 237 DFPYHAGPLALAD-----YWHQHALPQAESAVLRLPAACHVAPFQSMNALFPFITQPTPL 291 Query: 297 QV---LVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAM 353 Q VD P L ++E TG+GKTE AL +L+ D V LPT ATANAM Sbjct: 292 QQQAMSVDINTPGPQLFLLEDVTGAGKTEAALVLTHRLLSAGFGDGVYVGLPTMATANAM 351 Query: 354 LTRMEASASHLF---SSPNLILAHGNSRFNHLFQSIKSRAITE------QGQEEAWVQCC 404 R+ + LF SP+L+LAHG FQ + A C Sbjct: 352 YRRLATAYRMLFNEPGSPSLMLAHGARDMVTDFQLSLWAPEQTGPMRYGPDENSASAACN 411 Query: 405 QWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGL 464 QW + S KK L +GV T+DQ L++V+P +H+ +R LG +L++DEVHAYD Y + L Sbjct: 412 QWFADSRKKALLADVGVGTLDQALMAVMPFRHQSLRLLGFNGKILLLDEVHAYDAYTSRL 471 Query: 465 LEAVLKAQADVGGSVILLSATLPMKQKQKLLDTY--GLHTDP--VENNSAYPLINWRGVN 520 LE +L A GGS I+L+ATL Q+++L+ + G+ P + + YP V Sbjct: 472 LENLLAFHASQGGSAIILTATLAASQRERLVQAFYRGVQQPPGTLAKQAGYPWFTQVNVQ 531 Query: 521 GAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVA 580 + L E + + + + + + AG VC I N VD A Sbjct: 532 ALHEWPLATRAEVC--------RTVAVDWLSRSAEAIALIRRSVAAGQCVCWIRNTVDDA 583 Query: 581 QVCYQRLKELNN-TQVDIDLFHARFTLNDRREKENRVISNFGK--NGKRNVGRILVATQV 637 +++L + + D+ LFH+RF DR E+ + FGK +G+ G++L+ATQV Sbjct: 584 IAAWRQLCQCDEIAPDDVLLFHSRFAFCDRLAIEDTAVERFGKHSDGRARRGKVLIATQV 643 Query: 638 VEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRK------------YRPAGFEIPVATI 685 VEQSLD+D D +I+ P DLL QR GRL RH R+ R PV + Sbjct: 644 VEQSLDIDVDVMISDLAPVDLLIQRAGRLQRHIRRADGGCKRPDDAAPRQDDRPAPVLWV 703 Query: 686 LLPD----------GEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIY 735 L P+ G +YS+ V+WRTQ + E +L P+ R +DS+Y Sbjct: 704 LAPEWQPDAGRDWLGAELRGTGAVYSHQAVLWRTQAILRER--GALRMPEEARLLIDSVY 761 Query: 736 DDAEMDEPEWVGNGMDKFESAEC-EKRFKARKVLQWAEEYSLQDNDETI----LAVTRDG 790 + + P + G + E + ++ A+ L ++ Y TR G Sbjct: 762 -EQRIAAPAALEAGDYQAEGKQLGDRTIAAQSSLTFSLGYCAAAAQRGWSDDAELFTRAG 820 Query: 791 EMSLPLLPYVQTSSGKQLL 809 E SL + + L Sbjct: 821 EDSLDVYLAWRADHDDALP 839 >UniRef50_C7JIG3 CRISPR-associated helicase Cas3 n=8 Tax=Acetobacter pasteurianus RepID=C7JIG3_ACEP3 Length = 904 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 264/866 (30%), Positives = 375/866 (43%), Gaps = 91/866 (10%) Query: 10 YWGKSSKSLTKG---NDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAW 66 +WGK+ + +H LI H LDVAAVA CR + Sbjct: 13 FWGKARPVAEAEEVISSMHPLIAHMLDVAAVA--ILLPESKCLGLDCRQLGM-------- 62 Query: 67 LLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDS 126 IALHDIGK FQ K E W P P + H A GL+ + Sbjct: 63 ---LIALHDIGKLTPAFQSKVPECW----PEQAFGRCPDEVVMS--RHDADGLFLLDH-I 112 Query: 127 LSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQ 186 +Q F + D AV GHHG + S D++K + LA YA + Sbjct: 113 CKDQLAPLFGTNADGLDWSPTDKKQLWRAVAGHHGQPV-SSDENKFQNADLKLLAPYAHK 171 Query: 187 DKQAREEWISVLEALFLTPA--GLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNE 244 + VL +F P S + LAG ADW+GS ++ E Sbjct: 172 -------LVRVLLDIFRPPPIPSYSFLEDLLQLEWRLAGLTVQADWIGSRQEWFPYVRPE 224 Query: 245 DAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVL--VDA 302 D + R Q A LS +N ++G+ L + +Q L V + Sbjct: 225 DVADASGYFWNHALHRAQAAIASAGLSP--ANISPFQGMARLFPHICNSSPIQALLEVAS 282 Query: 303 LPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASAS 362 P P L VIE TGSGKTE AL A +L+ A + ALPT ATANAM R+ + Sbjct: 283 FPADPTLIVIEDMTGSGKTEAALVAAHRLMASGHASGLFVALPTMATANAMFDRLAIAYR 342 Query: 363 HLF---SSPNLILAHGNSRFNHLFQSIKSRAITEQG-------QEEAWVQCCQWLSQSNK 412 LF S P+L LAHG + + F S+ + + A V C WL ++ Sbjct: 343 SLFQPSSHPSLALAHGRALLDERFVSVLAPDDALDNTTVKKGRDDAAEVCCSAWLGSESR 402 Query: 413 KVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQ 472 + L Q+GV TIDQ L++VLPV+ +R G+ VL+VDE HAYD YM + A+L+ Sbjct: 403 RALLAQVGVGTIDQALMAVLPVRFATVRQAGLAGKVLLVDECHAYDPYMQEEMVALLRFH 462 Query: 473 ADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENN----SAYPLINWRGVNGAQRFDLL 528 A +GGS ILLSATL +QKL+ + E+ AYPL+ G +GA+ Sbjct: 463 AAMGGSAILLSATLTKSVRQKLVTAFREGLRQKESVGLSCMAYPLVTLVGRDGAEELPCA 522 Query: 529 AHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLK 588 P I + M +++ + AA GA V + N VD + L+ Sbjct: 523 PRPGLA--------RNIAVRQMSDASSIMAYVSDAAAQGAAVAWVRNTVDDVITSAKALE 574 Query: 589 ELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNG-KRNVGRILVATQVVEQSLDVDFD 647 +D+ +FHARF + DR E V++ FGKNG + R+L+A+QV+EQSLD+DFD Sbjct: 575 A---EGLDVMVFHARFAMVDRLAIEREVLARFGKNGTTADRSRVLIASQVIEQSLDLDFD 631 Query: 648 WLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVA----TILLPDGEGYGR----HEHI 699 L T P DL+ QR GRL RH R RP + + PD + R + Sbjct: 632 VLCTDLAPMDLIIQRAGRLRRHERAQRPVDCDEICIFSPNPVADPDPQWISRVLPGTAAV 691 Query: 700 YSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECE 759 Y + ++WRT + ++ + PD R+ ++ D + D P + D+ E Sbjct: 692 YRDPALLWRTAKVLQ--CKGQIRSPDMIRELIEEAADTS--DVPNGLMMASDEAEGKGRA 747 Query: 760 KRFKA-RKVLQWAEEYSLQDN--DETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYED 816 R A R +L + Y+ + + TR E PYV G + DGQV+ Sbjct: 748 ARGAAIRNILNYDAGYTPDSALWEREVRISTRLEER-----PYVTVRLG-VMKDGQVWP- 800 Query: 817 LSHEQQYEALALNRVNVPFTWKRSFS 842 + AL + VP KR+++ Sbjct: 801 ------WAALQQTSLAVPHERKRAWT 820 >UniRef50_Q1R120 CRISPR-associated helicase Cas3, protein n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1R120_CHRSD Length = 897 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 238/887 (26%), Positives = 377/887 (42%), Gaps = 69/887 (7%) Query: 6 YICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKA 65 + Y GK+ G+ HLL +H LDVAAV L + + ++ Sbjct: 10 FYHRYAGKA-MPGQSGDSCHLLAWHSLDVAAVGWHLLAPERPLTQQLALRLGIETEPLRR 68 Query: 66 WLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQD 125 L+F + LHD+GKF FQ L L L P + H G+ ++ Sbjct: 69 LLVFLLGLHDLGKFSRAFQ---EVLKLTLEGMAKPLGKPYLE-----RHDRLGVLLWDAW 120 Query: 126 SLSEQSLGDFFSFFDAAPHPYESWFPWVEAVT---GHHGFILHSQDQDKSRWEMPASLAS 182 + G D + P + GHHG + + + + + Sbjct: 121 WRQWRREGVLHWPPDDQTPARKLLEPMASLMAPFFGHHGRPVVTGRLNVEAFYGSDAQVD 180 Query: 183 YAAQDKQAREEWISVLEALFLTPAGLSIN--DIPPDCSSLLAGFCSLADWLGSWTTTNTF 240 + +W V+E + L D+ S +AG+ +L+DWLGS + Sbjct: 181 DVTAARDFIADWAKVVEPHWPVELLLDEEWLDVFRTLSWTIAGWATLSDWLGSHREYFPY 240 Query: 241 LFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRC--YEGVHALLDNGYQPRQLQV 298 +L Y+ A VL+ +G ++ YE + P LQ Sbjct: 241 C------ERAMSLSEYWSRALGQAESVLQATGFAASPDPVPYESLAQWFSADITPTPLQQ 294 Query: 299 LVDA--LPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTR 356 +A L P L ++E TG+GKTE A A +L+ + + FALPT AT+NAM R Sbjct: 295 KAEAISLEAGPQLFILEDVTGAGKTEAACILAQRLLAAGHGEGLYFALPTMATSNAMYAR 354 Query: 357 MEASASHLFS---SPNLILAHGNSRFNHLFQSIKSRAITEQGQ-----EEAWVQCCQWLS 408 + +S P+ +LAHG + N F+ A A QC +WL+ Sbjct: 355 LGDLHYRFYSAESRPSFVLAHGARQLNEDFERAVMAAQPGDNDYAAIDASASTQCSRWLA 414 Query: 409 QSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAV 468 SNKK L +GV TIDQ L+ +LP +H+ +R LG+ R VLIVDEVHA+D YM LL + Sbjct: 415 DSNKKALLADVGVGTIDQALMGLLPFRHQSLRLLGLARKVLIVDEVHAFDHYMQTLLHQL 474 Query: 469 LKAQADVGGSVILLSATLPMKQKQKLLDTYG---LHTDPVENNSAYPLINWRGVNGAQRF 525 L A GGS ILL+ATLP +Q L++ + + +++ YPL+ G + Sbjct: 475 LAHHARQGGSAILLTATLPFAMRQALVNAWQQGLGYESAALSSTDYPLLTHSGQGAHRET 534 Query: 526 DLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQ 585 L PE + + + + + + + AG + + N VD A +Q Sbjct: 535 PLATRPEVM--------RRVEIGWLTQEEDAIAEVSRGIEAGDCIVWVRNTVDDAIRAWQ 586 Query: 586 RLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKR--NVGRILVATQVVEQSLD 643 ++++++ LFHARF + DRR E+ VI FGK G++L+ TQV ++SLD Sbjct: 587 AIRDIHSDPERCLLFHARFAMVDRRRIESDVIERFGKTSTPSIRRGQVLITTQVFQESLD 646 Query: 644 VDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEH----- 698 D D +I+ P DLL QR GRL RH R R + P +L P+ E + + Sbjct: 647 CDADRMISDIAPIDLLIQRAGRLQRHQRGER----QPPRLLVLAPEWEESPKADWLSRAH 702 Query: 699 -----IYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNG-MDK 752 +Y + ++W TQ+ + EL ++ PDA R+ ++ +Y + + PE + +++ Sbjct: 703 RGTQAVYQDTSLIWLTQRVLREL--GAIEMPDAARELIERVYACSIDEIPEALEQARLER 760 Query: 753 FESAECEKRFKARKVLQWAEEYSLQDN----DETILAVTRDGEMSL--PLLPYVQTSSGK 806 + L + Y L ++ E TR + S +L Q S Sbjct: 761 SGMNKMVGSMATHNTLDLQDGYRLNEDFDQWQEERDVGTRLSDESSVNVVLLKRQDDSLV 820 Query: 807 QLLDGQVYED-LSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLW 852 DG+ + D LS + E+ +P S+ + + L Sbjct: 821 LWADGEHHADMLSQCRLRESQVRKLAELPERDAESWEALQERYKALR 867 >UniRef50_Q7N8H9 Similar to unknown protein YgcB of Escherichia coli n=1 Tax=Photorhabdus luminescens subsp. laumondii RepID=Q7N8H9_PHOLL Length = 905 Score = 563 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 248/931 (26%), Positives = 390/931 (41%), Gaps = 92/931 (9%) Query: 7 ICHYWGKSSKSLT-KGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKA 65 YWGK+ + L D HLL YHCLDVAAV L LS Q++++ Sbjct: 6 YFQYWGKAKRVLEIDSADYHLLPYHCLDVAAVGMQLLSLERSLTRDLASFLALSTQQLRS 65 Query: 66 WLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQD 125 + F +ALHDIGKF FQ + L+ + P R F H GLY++ Sbjct: 66 MVSFILALHDIGKFASAFQKLLPGLAVGLH----RPDCPKEYDGRYFCHDRIGLYFWEN- 120 Query: 126 SLSEQSLGDFFSFFDAAPHP-----YESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASL 180 + L + + A H +++ +++ V GHHG + + Sbjct: 121 --IKAELLNRLVNIEGAEHREQREMFDTLMVFIDCVLGHHGRPIDKTGYRAIKHFTEPH- 177 Query: 181 ASYAAQDKQAREEWISVLEALFLTPAGLS------INDIPPDCSSLLAGFCSLADWLGSW 234 + A + L LF + S AG LADW+GS Sbjct: 178 ------NFNAAALFAHHLVELFQPEFPIEKLQSKEWRRRLEQVSWQFAGIAILADWIGSD 231 Query: 235 TTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPR 294 + T+ S L Y++ Q A + + L + G+ Sbjct: 232 SHYFTY------QSKPMPLTDYWKHAQAMAKKAVMAINLGRPPVVKPFISIQEYYGFAAT 285 Query: 295 QLQVLVDALPV--APGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANA 352 LQ +++PV +P L ++E TG+GKTE ALA +L+ + AD F LPT A++NA Sbjct: 286 PLQQWAESIPVDDSPQLFILEDVTGAGKTEAALALTHRLMQAKAADGFYFGLPTIASSNA 345 Query: 353 MLTRMEASASHLF-----SSPNLILAHGNSRFNHLFQS---IKSRAITEQGQEE--AWVQ 402 + +R+ + S PN++LAHG N+ F G+ + A Q Sbjct: 346 IFSRIAQHYQQMLLTEDDSKPNIVLAHGTWGMNNQFHEPVLALGHPDRNDGKTDIAASAQ 405 Query: 403 CCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMN 462 C QWL+ K+ L G+ IDQ L++VLP +++ +R G+ R VLIVDEVHA D +M Sbjct: 406 CNQWLADPRKQALLAPAGIGAIDQALLAVLPRRYQSLRLFGLNRKVLIVDEVHAADEFMF 465 Query: 463 GLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTY---GLHTDPVENNSAYPLINWRGV 519 LLE +L GGS +LL+ATL KQ+Q+L D + G + + + +PL + Sbjct: 466 NLLENLLALHLYQGGSAVLLTATLTFKQRQRLTDIWLNVGGLSSQLLQKNDFPLATKISL 525 Query: 520 NGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDV 579 N +L EQ I + + + +E+++AA G V I N VD Sbjct: 526 NA-----ILPVIEQPLSSRKDVSREIKVDFLNSVGSCVEKVLAAIVQGQCVVWIRNTVDD 580 Query: 580 AQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKN--GKRNVGRILVATQV 637 A YQ L+ L LFH++F L R+E E+ V++ F KN G+ G+ L+ TQ+ Sbjct: 581 AIEAYQTLRSLLTEPERCLLFHSQFILQHRKEIEDHVLTIFDKNSHGELRRGKALITTQI 640 Query: 638 VEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRP-------AGFEIPVATILLPDG 690 + SLD D D +I+ CP D L QR GRLHRH R P+ I P+ Sbjct: 641 FQASLDTDADVMISDLCPIDDLIQRAGRLHRHTRDSDGIYRWGIKDSRPTPILFIHAPEW 700 Query: 691 E----------GYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEM 740 + +++Y + +W T + + +L ++ P RQ +D++Y A Sbjct: 701 REQPGSDWLSHNFRNTQYVYRSPVRLWLTMRILRKL--GAIRMPAETRQLIDAVYGHAYE 758 Query: 741 DEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQD--------NDETILAVTRDGEM 792 PE + ++ E + KA+ + Y D +D I A D E Sbjct: 759 QAPEVLKYQENELIDEERSQAAKAKSYWLQWQLYGYCDRSADHWYEDDSDINARYSDIE- 817 Query: 793 SLPLLPYVQTSSGKQLL---DGQVYEDLSHEQQYEALALNRV-NVPFTWKRSFSEVVDED 848 ++ +L + SG+ + + LS + +++ +P + + + Sbjct: 818 TVEVLLLKKGDSGQLVPWVNSAEFSVSLSTIKLSRNKYADKLAPIPTKLIPALNAL---- 873 Query: 849 GLLWLEGKQNLDGWVWQGNSIVITYTGDEGM 879 + L W+ TY+ G Sbjct: 874 -QQRYYQVRYLQPWLPD-QDPNFTYSSTIGF 902 >UniRef50_A1ARI0 CRISPR-associated helicase, Cas3 family n=3 Tax=Bacteria RepID=A1ARI0_PELPD Length = 879 Score = 561 bits (1445), Expect = e-158, Method: Composition-based stats. Identities = 231/900 (25%), Positives = 369/900 (41%), Gaps = 100/900 (11%) Query: 5 KYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSV-VLQNTFCRNEMLSKQRV 63 K + W K+ + H LI+H LDVAA AD + + L + Sbjct: 3 KKLSLIWAKT--GMNGDGTWHPLIFHMLDVAACADAILAREPDSTRIRIAAILGLEWEIA 60 Query: 64 KAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFN 123 +AW+L +A HD+GK FQ K +P+ + NH Sbjct: 61 RAWILLVVACHDLGKACPGFQCKWENMTGIDTGRSPNTD---------INHAYVSQIALT 111 Query: 124 QDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASY 183 + L P E +AV HHG + + + A Sbjct: 112 EILL-------------EKGWPDELAELVADAVGCHHG---NRASSIRLNYLSGDRRAIG 155 Query: 184 AAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFN 243 QAR + + +F+ + LL+G S ADW+GS F Sbjct: 156 KGDWTQARLGLVDAVLNVFMPVQNPVKQTLSGPDFMLLSGLTSFADWIGSNEEWFPF--- 212 Query: 244 EDAPSDINALRTYFQDRQQDASRVLELSGL-VSNKRCYEGVHALLDNGYQPRQLQVLVDA 302 + L +FQ R+ +A L+ G E + PR LQ V Sbjct: 213 -GGAEECGDLPGWFQKRRHNADLALDAIGWEPRTPLSSEPKSFQQVFDFVPRPLQQAVAD 271 Query: 303 LPVA---PGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEA 359 + V P + ++EAP G GKTE A +L + + ALPT+AT NAM R Sbjct: 272 VLVGLSEPAIILVEAPMGEGKTEAAFFAHLELQRRFGHRGLYVALPTKATGNAMFKRTIK 331 Query: 360 SASHLFS--SPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLG 417 + +L L HG + N FQ+++ I + ++ +W + + K+ L Sbjct: 332 FIRSQGTHRKLDLQLLHGGTLLNDTFQNLRLSGI-HDPETGGDIRAGEWFT-NKKRALLS 389 Query: 418 QIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGG 477 + GV T+DQ L+ +LPV+H F+R G+ V++ DE+HAYD Y LL +L+ +G Sbjct: 390 EYGVGTVDQALLPILPVRHNFVRLWGLANRVVVFDEIHAYDAYTGTLLIHLLRWLLALGS 449 Query: 478 SVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPR 537 SV+LLSATLP ++KL D E YP ++ ++ + P Sbjct: 450 SVVLLSATLPPSIRRKLADAVSADLPAQETQ--YPRLSV----FCPGKEVNQIHFEADPG 503 Query: 538 FSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKE-------- 589 + + L LP ++ ++ G + N V AQ Y+ E Sbjct: 504 RRLTLRLVGLPSDLP--SIHNALVVHLAGGGMGLALLNTVQRAQDLYRLFSEGEAMEYEG 561 Query: 590 -----LNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDV 644 + ++ LFHARF ++ R+++E++V+ FG++G R+ +IL+ATQV EQSLD+ Sbjct: 562 HRVGKRLSDGTEVFLFHARFPVDRRQKREDQVLKAFGQSGCRDERKILIATQVAEQSLDL 621 Query: 645 DFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIY---S 701 DFD + T P DL+ QR GRL RH R +RP + + L D + Sbjct: 622 DFDLIATDLAPIDLVLQRAGRLWRHARSFRPVEEPVLLVAGLAGDEPPSFEKPLWWGSVY 681 Query: 702 NVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAE---C 758 ++ T + ++ PD + ++Y++ ++D PE++ M+ AE Sbjct: 682 REDLLLSTWCLL--HTKQNITLPDEIDSLVQAVYEE-QVDIPEFLAERMNCAIFAEGKAI 738 Query: 759 EKRFKARKVL-------QWAE-EYSLQDNDE-----TILAVTRDGEMSLPLLPYVQTSSG 805 +R +A + W E ++ D DE +++A TR GE S+ +P Sbjct: 739 SERQQANMAIIGFPDDASWKEVKFEKADEDEPGLHRSLVAQTRLGEPSVMAIPIFSADEF 798 Query: 806 KQLLDGQVYEDLSHEQQYEALALNRV---------NVPFTWKRS------FSEVVDEDGL 850 ++ DLS + A+ L+R VP WK+S F V+D +G Sbjct: 799 DPAK--ELTFDLSKDFFLRAVNLSRKGVVKKLQKRGVPEGWKKSSLLRNCFPLVLDAEGR 856 >UniRef50_Q1GAI8 CRISPR-associated helicase Cas3 n=3 Tax=Lactobacillus RepID=Q1GAI8_LACDA Length = 921 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 231/965 (23%), Positives = 371/965 (38%), Gaps = 136/965 (14%) Query: 1 MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSK 60 M+ K WGK + L+ H +D V ++ + + Sbjct: 1 MKLSKEALSLWGK-KSNQDGDEHWLPLVAHMVDTMNVGHWLYNSWLSEGQRSMLTTRICD 59 Query: 61 QRVKAWLLFFIALHDIGKFDIRFQYKSAESWLK----------LNPATPSLNGPSTQMCR 110 + + F +HD+GK FQ K + + ++ + LN S Sbjct: 60 AEMSKLVSFLCYIHDLGKATPAFQTKESYNHDHQLDEELIHRLVSHSFKKLNDLSLPSRS 119 Query: 111 KFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQD 170 K H AG + L+E V GHHG Sbjct: 120 KSPHARAGEAILERAGLNETI---------------------AAIVGGHHGKP--QNGDQ 156 Query: 171 KSRWEMPASLASYAAQDKQAREEWISVLEALF---LTPAGLS-INDIPP---DCSSLLAG 223 + + ++ S A D++ ++ W L L AG I+++PP + +L G Sbjct: 157 EEQIDVFTSNYYQADNDEEIQQPWKDAQRELIDYGLELAGYEDISEVPPVNQPEAVILEG 216 Query: 224 FCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQD-----RQQDASRVLELS-GLVSNK 277 +ADWL S T N + ++ L F D R Q+A ++ + + Sbjct: 217 LLIMADWLASSTCLNND--PDKPMFNLIGLDQSFDDLDMKARYQNAISTWAINDAWIPEE 274 Query: 278 RCYEGVHALLDNGYQPRQLQVLVDAL---PVAPGLTVIEAPTGSGKTETALAYAWKLIDQ 334 + ++PRQ+Q ++ V PGL +IEA G GKTE AL A +L Sbjct: 275 VANVDYYYEQHFSFKPRQIQAAMEEHVKEAVDPGLVIIEAEMGIGKTEIALTAAEQLAYV 334 Query: 335 QIADSVIFALPTQATANAMLTRMEASASHLFS----SPNLILAHGNSRFNHLFQSI-KSR 389 V LPTQAT NAM R+ + + + +P++ L HG + +N + + ++ Sbjct: 335 TGRTGVYIGLPTQATTNAMFDRVNSWLTKIAGIEGINPDIKLLHGKAEWNSRYTDLPRAE 394 Query: 390 AITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVL 449 I + + V W S KK L V TID +L+ L KH F+R LG V+ Sbjct: 395 DIEAEELDAGTVTVNSWFS--GKKSILADFAVGTIDNLLLMGLKQKHLFLRHLGFSNKVV 452 Query: 450 IVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLH-------- 501 I+DEVHAYD YM L LK V++LSATLP +++ +L+ +Y Sbjct: 453 IIDEVHAYDMYMQSYLSKALKWLGAYHVPVVILSATLPKEKRNELIKSYIKGKYRRVKKV 512 Query: 502 ---TDPVENNSAYPLINW---RGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLT 555 + E+N AYPL++ + + F A P ++ + I EP Sbjct: 513 LQAQEGWESNRAYPLLSLLDGKELRQYSDFGPKAEPREMQVNY-INDEPT---------E 562 Query: 556 MLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENR 615 +L ++ G +I N V AQ L + H+ F DR E Sbjct: 563 VLAKVNDKIKDGGIAGIIVNTVKRAQE----FAGLVGQDCQCLVLHSAFLATDRSRLEKE 618 Query: 616 VISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRP 675 + S GK GKR I++ TQV+EQSLD+DFD + T P DLL QR GRLHRH + RP Sbjct: 619 LQSLIGKKGKRPDKLIVIGTQVLEQSLDIDFDVMFTDIAPIDLLLQRAGRLHRH-KISRP 677 Query: 676 AGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIY 735 G E ++ PD + YG + +T+ + + + P+ + + +Y Sbjct: 678 KGLEKRQLYVMKPDSDDYGPANEAVYEKYYLQKTEHFLPQ----KIQLPNDISRLVQLVY 733 Query: 736 DDAEMDEPEWVGNGMDKFESAECEKRFKARK-------------------------VLQW 770 D+ D+ E + DK ++ KA + +W Sbjct: 734 DEDTDDQVENLDEARDKLNVDRNREKSKAESFQINDPVYPAAKNDLYDDTWVEELTIHRW 793 Query: 771 AEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNR 830 + +D A RD S+ ++ + S L++G D E + LA Sbjct: 794 LDRDKGNLDDNQASAAVRDIRESIEVILLKEISGEYYLMNG----DKVSEMMDKDLAKEL 849 Query: 831 VNVPFTWKRSFSEVV------------DEDGLLWLEGKQN---LDGWVWQGNSIVITYTG 875 + +P + + + D G WL+G + N + Y+ Sbjct: 850 IRLPNAVTPNIEQAINILEENTAQAFPDWQGSPWLKGSLAVVLDEHAKGSFNGYKLRYST 909 Query: 876 DEGMT 880 + G++ Sbjct: 910 ETGLS 914 >UniRef50_A5GBL7 CRISPR-associated helicase Cas3 n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5GBL7_GEOUR Length = 854 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 224/855 (26%), Positives = 348/855 (40%), Gaps = 84/855 (9%) Query: 1 MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSK 60 M +W K++ G ++ H L+V VA C + S + F Sbjct: 1 MNDLPTYFGFWAKTTPEGKPGISVY---DHMLNVGCVARCIAETSPKILERFHLES---- 53 Query: 61 QRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLY 120 + + ALHD+GK FQ K ++WL+ + +HG Sbjct: 54 ----SMVGALAALHDLGKISPGFQRKC-DAWLEEYGLNIIARNGCWDTAMESDHGKISHA 108 Query: 121 WFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASL 180 + +F ++ + HHG + D+ ++ + Sbjct: 109 AIH-------------AFLIETGMDRKTAKFASAVLGAHHGRLTPPNDRGYRPQKLISDS 155 Query: 181 ASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTF 240 AS D + +E + A S++D P LAG S+ADW+GS F Sbjct: 156 ASKIDWDNERKENARMTWAHFSGSSAEFSLSDDSPAL-WWLAGLTSVADWIGSDER---F 211 Query: 241 LFNEDAPSDINALRTYFQDRQQDASRVLE-LSGLVSNKRCYEGVHALLDNGYQPRQLQVL 299 E SD + + A + L +++ +E + + +Q Sbjct: 212 FSPERRASDED-----VTTLARMALDAIGFLPPIINTNHSFESIF-----DFPSNDMQAK 261 Query: 300 VDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEA 359 A PG+ VIEAP G GKTE AL A++L+ A+ + FALPTQAT+N + RM Sbjct: 262 ALATITGPGVYVIEAPMGMGKTEAALGAAYQLMVSGKANGIYFALPTQATSNRIHLRMNE 321 Query: 360 SASHLFSSPNLI-LAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQ 418 + L HGNS I A ++ + + S K+ + Sbjct: 322 FLRRIAPEAQASRLIHGNSWLMQTDFGICPAATGKKEATTDDARAGRDWFASAKRALIAP 381 Query: 419 IGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGS 478 GV T+DQ L+ V+ KH F+R + V+I+DE+H+YD Y L++ ++ +G + Sbjct: 382 FGVGTVDQALLGVVAAKHFFVRHFALAGKVVILDEIHSYDLYTGTLIDKLITTLEGLGCT 441 Query: 479 VILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRF 538 VI+LSATL K++ +++ G D E YPLI G N Q F +A Sbjct: 442 VIVLSATLTGKRRGQMVSCQGDLADEAE--RPYPLIT--GRNEGQTFVPVAAKPPASRSV 497 Query: 539 SIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDID 598 +++ + E I A G V ICN V AQ Y+ K L + + Sbjct: 498 TVEFRAVD--------AATEEAIRVARNGGAVLWICNTVSAAQKQYRSFKGL---EFPVG 546 Query: 599 LFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADL 658 L H+RF R + E + FGK G G ILV+TQVVEQS+D+D D +IT+ P D+ Sbjct: 547 LLHSRFPFWQREKLEVEWMERFGKKGTTRCGSILVSTQVVEQSVDLDADLMITELAPTDM 606 Query: 659 LFQRLGRLHRHHRKYRPAGF----------EIPVATILLPDG--EGYGRHEHIYSNVRVM 706 L QRLGRL RH RK RP + I+ P + G +Y+ ++ Sbjct: 607 LLQRLGRLWRHDRKQRPVDVARLCIIEEDKSLEEFQIMEPKAIMKSLGSKAKVYAPF-IL 665 Query: 707 WRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARK 766 R+ + + + P RQ ++S Y + + D W + F + ++ R Sbjct: 666 LRSLEVWKAQTQ-PVSIPSQIRQLIESTYMERDTDPDSWQELFNEWFGTDSAKEMIATRN 724 Query: 767 VLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYV--QTSSGKQLL-----DGQVYEDLSH 819 W + +L D + TR EM P +P V + S K+ + GQV D Sbjct: 725 CNIW--QVALNDEEG---VQTRLNEM--PTIPLVLCRALSEKEAVFVDRSKGQVGGDDYL 777 Query: 820 EQQYEALALNRVNVP 834 +A+ N V VP Sbjct: 778 LAVAQAIHRNLVRVP 792 >UniRef50_A5FTJ4 CRISPR-associated helicase Cas3 n=2 Tax=Acidiphilium cryptum JF-5 RepID=A5FTJ4_ACICJ Length = 892 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 249/940 (26%), Positives = 387/940 (41%), Gaps = 113/940 (12%) Query: 4 FKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRV 63 ++ + +WGKS + + ++ H LDVAA M K+ Sbjct: 7 WQNVLAFWGKS-YTREDKLFAYPIVAHSLDVAAAGSHL--------------PMPLKEFD 51 Query: 64 KAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFN 123 K + F ++LHDIGKF FQ + ++ W + GP H A Sbjct: 52 KRTVYFLLSLHDIGKFSRPFQAQESDLWPS------RVLGPWPGRVAGPRHDALTAALLE 105 Query: 124 QDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASY 183 + F + + + GHHG + D + A Sbjct: 106 VFADEGLLDPVFPLGRRGSGWHPSKRSGLIRTIAGHHGRPIDVPDHLEPAVCRQCLDA-- 163 Query: 184 AAQDKQAREEWISVL-EALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLF 242 ARE ++L +AGF +LADW+GS Sbjct: 164 ------AREFVQAMLDLFQPSPLPPPQSRRASARMQWQIAGFLTLADWIGSNEIWFPR-- 215 Query: 243 NEDAPSDINALRTYFQDRQQDASRVLELSGLVSNK-RCYEGVHALLDNGYQPRQLQVLVD 301 + SD++ + + A++ +GL +K R + G AL P Q + Sbjct: 216 -DGTHSDLDPHDYFREVALPRAAQAGADAGLTPSKARTFTGFSALFPKVDTPSPAQSWAE 274 Query: 302 ALPVAPG--LTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEA 359 +P+ G L +IE TGSGKTE AL A +++ A + FALP+ ATAN+M R+ Sbjct: 275 TVPLPEGAVLAIIEDLTGSGKTEAALTLASRIMASGEAKGIFFALPSMATANSMFQRLTD 334 Query: 360 SASHLFSS---PNLILAHGNSRFNHLFQSI------KSRAITEQGQEEAWVQCCQWLSQS 410 + LF P++ L HG + + F+++ + E + +C WL++ Sbjct: 335 TYLRLFEKGSRPSIALTHGKAGLDPRFRALISASPSSASEPREGEAIPSEAECAAWLAED 394 Query: 411 NKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLK 470 ++ +G+ TIDQ L++VLPV+H +R G+ VL+VDEVHA+D+YM+ L+A+L+ Sbjct: 395 RRRSLFADVGIGTIDQALLAVLPVRHAPLRLHGLQGKVLVVDEVHAFDSYMDRELQALLE 454 Query: 471 AQADVGGSVILLSATLPMKQKQKLLDTY----GLHTDPVENNSAYPLINWRGVNGAQRFD 526 A +GGS ILLSATLP++ +Q L D + G + YPL G + Sbjct: 455 FHAALGGSAILLSATLPLRMRQSLTDAFRRGAGQEAPRQVTSMHYPLATMVGSEAHTEYS 514 Query: 527 LLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQR 586 L P + + + + L R++ AA GA V I N VD A Sbjct: 515 LGVRAG--------LPRSVTITRVGTEAEALSRVVDAARLGAAVVWIRNSVDDALEAAAA 566 Query: 587 LKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGK-RNVGRILVATQVVEQSLDVD 645 ++ N +D +FHARF DR+ E V+ FGK + +L+ATQVVEQSLD+D Sbjct: 567 VRMQN---IDPIVFHARFAHCDRQSIELEVLRRFGKESVGQARAGVLIATQVVEQSLDLD 623 Query: 646 FDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEG----------YGR 695 FD L+T P D L QR GRL RH+R R G P +L P+ R Sbjct: 624 FDLLVTDLAPVDSLIQRAGRLWRHNRGTRVVGR--PEMVVLSPEPSMDADAGWLDPLLPR 681 Query: 696 HEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFES 755 ++Y N ++WR + + + L P R +++ D D P + D + Sbjct: 682 TNNVYRNPALLWRGARAL--FAKSDLVTPGDMRPLIEAA--DNVADTPPGLKMAADGAWA 737 Query: 756 AECEKR-FKARKVLQWAEEYSLQDN--DETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQ 812 R F A VL + E Y+LQ D TR E L + GK + Sbjct: 738 KHLSHRAFAAGAVLDFDEGYTLQSGAWDRETRTPTRLEEREQATLRLARVKDGKVVPYAG 797 Query: 813 VYEDLSHEQQYEALALNRVNVPF-------------------TWKR-------SFSEVVD 846 + DL + + R + W+R + EV Sbjct: 798 LAGDLRQAWTLSEVRVQRYRIAACPPPAGYSEAANEARSQWGRWERESPHMLLAILEVTK 857 Query: 847 EDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMTRVIPAN 886 ++G L L+G++ G+ + Y +G+ R++PA+ Sbjct: 858 QEGQLMLKGEKP------DGHPVSAIYDAVDGL-RLLPAS 890 >UniRef50_A8LYZ3 CRISPR-associated helicase Cas3 n=1 Tax=Salinispora arenicola CNS-205 RepID=A8LYZ3_SALAI Length = 929 Score = 554 bits (1427), Expect = e-156, Method: Composition-based stats. Identities = 220/840 (26%), Positives = 344/840 (40%), Gaps = 63/840 (7%) Query: 10 YWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQ--RVKAWL 67 WGKS+ + L++H +D AAVA WD+ + E L+ K+ + Sbjct: 12 IWGKSNHLPRP----YPLLWHLIDTAAVAGALWDRYLAPNQRRVIAEGLATDDSHAKSLI 67 Query: 68 LFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSL 127 +F+ LHD+GK FQ K ++ L A + H AG L Sbjct: 68 MFWAGLHDVGKATPGFQKKDGSAFDALRSAG---SYEDVVGDGSLRHDTAG-------QL 117 Query: 128 SEQSLGDFFSFFDAAPHPYES-WFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQ 186 + L + + + + V GHHG + R ++ Sbjct: 118 AMPDLLAPLGYPPLVRRVSDRLAYRVAQIVGGHHGRFQQTSGPHGGRLQLGE------GG 171 Query: 187 DKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTT-NTFLFNED 245 + R + V+ +P I S L+ G LADWL S Sbjct: 172 WSKQRAALVRVVHEAVGSPERPPA--IGAAASVLVTGVVILADWLASQEHFLRQQSSRVP 229 Query: 246 APSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDA--- 302 + A+ T+ A+ +L+ +GL S Y + ++P LQ + Sbjct: 230 QYTGAEAVSTHLAVLSAPAAALLDDAGLGSP--SYRALGFEDLFPHRPNALQRSIIEELL 287 Query: 303 -LPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASA 361 + +PGL V+ A TG GKTE AL A +L + A FALPT AT++ M R+ A A Sbjct: 288 PVVDSPGLLVVTAATGDGKTEAALVAAKRLAEVCGAHGFFFALPTMATSDEMYRRVRAFA 347 Query: 362 SHLFSSPN-LILAHGNSRFNHLFQSIKSRAITE-----QGQEEAWVQCCQWLSQSNKKVF 415 + L + P + L H S N +++ + + V +WL + K+ Sbjct: 348 ARLAAGPAPVTLLHSMSWLNAEYEARAGVDPGDAAEVVSDEPSGDVVAPEWL-RGPKRGL 406 Query: 416 LGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADV 475 L + V T+DQ L++VL KH +R L + V +VDE HAYD + LL +L Sbjct: 407 LAPMAVGTVDQALLAVLTTKHNALRLLALSGKVFVVDEAHAYDDFTTSLLCGLLNWLGAY 466 Query: 476 GGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLP 535 G V+LLSATLP Q L+ Y N++ P W V Q D ++ + Sbjct: 467 GCPVVLLSATLPSSQAATLVGAYEEGAGVGPTNTSVPYPGWTFVPAIQGRDTVSISPTMR 526 Query: 536 P--------RFSIQPEPI-----CLADMLPDLTMLERMIA-AANAGAQVCLICNLVDVAQ 581 F++ P+ +D ++ +++A A G ++CN V+ AQ Sbjct: 527 EALVSGRTVEFTLDVRPVRHLVGSESDPADRRAVVRQVLAPVAEQGGCAAVVCNTVNDAQ 586 Query: 582 VCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQS 641 Y+ +++ + VD+ L H+RF R E ++I GK+G R I+VATQV+EQS Sbjct: 587 QTYRVVRDWASGGVDVVLLHSRFPARRREEITTQIIGRLGKDGHRPRSMIVVATQVLEQS 646 Query: 642 LDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATIL---LPDGEGYGRHEH 698 LD+DFD L+T P L QR GR HRH R+ RP P +L PDG + R Sbjct: 647 LDLDFDLLVTDLAPMAQLLQRAGRCHRH-RRTRPPWAAQPRVVVLDPRGPDGVEHVRPAA 705 Query: 699 IYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAEC 758 H+ + P A + ++++Y +D + D++ + Sbjct: 706 WGDVYARYLLRATHLRLAGTDRIAVPHAVQNQVEAVYSPQSVDHDLVLSAEYDEYRAEAM 765 Query: 759 EKRFKARKVL-----QWAEEYSLQDND-ETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQ 812 R A + Q A+ +L + A TR G S +L + G+Q LD + Sbjct: 766 ALRGMAELGVIPDPAQVADLAALSLTETPEWRASTRLGAESERVLCCYLDAGGRQWLDPE 825 >UniRef50_D2L2X4 CRISPR-associated helicase Cas3 n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L2X4_9DELT Length = 892 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 285/899 (31%), Positives = 378/899 (42%), Gaps = 83/899 (9%) Query: 7 ICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTF-CRNEMLSKQRVKA 65 + HYWGK++K T HLL+YHCLDVAA D L ++ + A Sbjct: 1 MYHYWGKAAKGSTA---HHLLVYHCLDVAATLRALLDADKRLHQRLHALAPAVAPADLDA 57 Query: 66 WLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQD 125 LL+F LHD+GKF FQ + + KL+ GP + +H G F + Sbjct: 58 LLLYFAVLHDLGKFAPAFQQQRQDIVDKLD-------GPPAKRICNAHHSHLGKAIFFDE 110 Query: 126 SLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAA 185 + D PH + P +A GHHG QD S +P S A AA Sbjct: 111 DIVVAWQPSLL-CRDGWPH-KDILAPLTDAAFGHHGKPP--QDLSDSNLRLPPSTA--AA 164 Query: 186 QDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNED 245 + E L P G + N S AG +ADWL S F + E Sbjct: 165 IRQFMGEVCSRFLPGPLTLPGGDAANQAFRPVSWFFAGLLVVADWLASGQG---FAYCET 221 Query: 246 APSDINALRTYFQDRQQDASRVLELSGLVSN-KRCYEGVHALLDNGYQ---PRQLQVLVD 301 + + A + G+VS R G H LL + Q P LQ Sbjct: 222 PMDLAVY---WNERALPQARATVADCGMVSPLPRQGGGFHELLPHIEQKYGPTPLQAYAL 278 Query: 302 AL---PVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRME 358 + P L + E TG+GKTE AL A ++ A LPT ATAN M RM Sbjct: 279 EVAGRDSGPRLFIFEDVTGAGKTEAALLAAHAVMAGGEAHGFYIGLPTMATANGMYARMA 338 Query: 359 ASASHLFSS-----PNLILAHGNSRFNHLFQSIKSRAITEQGQEEA--------WVQCCQ 405 AS LF P+L+LAHG F G+ +A C Sbjct: 339 ASYRALFMDADTVVPSLMLAHGARGIQDAFLHSIGLERGRDGESDAADGEQPDSGAFCAA 398 Query: 406 WLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLL 465 WL+ + KK L GV T+DQ L++VLP KH+ +R LG+GR+VLI DEVHAYD Y LL Sbjct: 399 WLADNRKKSLLAPCGVGTLDQALLAVLPAKHQCLRLLGLGRNVLIADEVHAYDPYTTRLL 458 Query: 466 EAVLKAQADVGGSVILLSATLPMKQKQKLLDTY---GLHTDPVENNSAYPLINWRGVNGA 522 E +L QA +GG ILLSATLP + KQ L + + P + PL R NG Sbjct: 459 ETLLTFQAGLGGCAILLSATLPRRIKQGLAAAFCRGAGYPVPAVSADPLPLAT-RLANGV 517 Query: 523 QRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQV 582 LA L ++ +P L+R++A AG L+CN VD A Sbjct: 518 FTETPLAQTRTLSVAVTLCHDP---------AEALDRLVAVHTAGGCAILLCNTVDRAMA 568 Query: 583 CYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKR--NVGRILVATQVVEQ 640 L E D+ LFHARF L DR E RV++ FGK G+ILVATQV+EQ Sbjct: 569 ARNLLAERLPP-ADVLLFHARFALCDRLAIEERVLAIFGKGSTTEIRRGKILVATQVIEQ 627 Query: 641 SLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLP-----DGEGYGR 695 SLDVD D+L+T+ P +L+ QR GR RH+RK+RPAGF P +L P G G+G Sbjct: 628 SLDVDADFLVTELAPMELVLQRAGRCQRHNRKWRPAGFVGPAVLVLSPPAVDEPGPGWGE 687 Query: 696 HE-----HIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGM 750 E +Y V+WRT Q + L P R+ ++ YD + P + + Sbjct: 688 AELGKGLFVYPGHDVLWRTAQLLARWERVEL--PRDARELVEGAYDADALPTPAALQSAE 745 Query: 751 DK-FESAECEKRFKARKVLQWAEEYSLQDNDETILA----VTRDGEMSLPLLPYVQTSSG 805 DK A EK L++++ Y TR GE + L G Sbjct: 746 DKQTGKASAEKSLALFNGLEFSQGYGTDAAAGHWHDDRETPTRLGEERVTLRLVRVVDDG 805 Query: 806 KQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVW 864 L G+ + A + V+VP + + L D W Sbjct: 806 LALWAGEGLD-------AATCARSEVSVPKHRGDALAATDAWQERLDAFAATLPDKGRW 857 >UniRef50_D2RAZ8 CRISPR-associated helicase Cas3 n=3 Tax=Actinobacteria (class) RepID=D2RAZ8_GARVA Length = 948 Score = 550 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 207/935 (22%), Positives = 338/935 (36%), Gaps = 117/935 (12%) Query: 9 HYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQ-RVKAWL 67 WGK + L H D V W+ + LSK+ K Sbjct: 10 ALWGK-KREANGVMQWLPLAQHLEDTRNVIGQLWEHWLSGGQRRLIESSLSKRVDAKKLS 68 Query: 68 LFFIALHDIGKFDIRFQY-KSAESWLKLNPATP-----------SLNGPSTQMCRKFNHG 115 F +HDIGK FQ+ KS + L+ A +T+ +H Sbjct: 69 QFLGCVHDIGKATPVFQFRKSPSNSKDLDIALKNKLATVGFTNIDYFIDTTEGSHNSHHT 128 Query: 116 AAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWE 175 G + + + E V HHG L++ +S Sbjct: 129 ITGQFILSNAGVPEGIC---------------------AIVGAHHGKPLNNDSVCRSNKS 167 Query: 176 MPASLASYAAQDKQAREEWISVLEALFLTPAGL-------SINDIPPDCSSLLAGFCSLA 228 + + + + W + + + +I LL G +A Sbjct: 168 KYPDHYYQSETESENSKLWKKLQNDILDWALERNDFSNVNDLPEISEPAQVLLCGLVIMA 227 Query: 229 DWLGSWTTTNTF------LFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEG 282 DW+ S L + Q +D L VS Y Sbjct: 228 DWIASNEHYFPLISIEQDLIENQEERYRKGWENWLQHGSKDVWESLNCCSNVSQTYKYR- 286 Query: 283 VHALLDNGYQPRQLQVL---VDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADS 339 G+ P +Q+ V + PG+ ++E+ GSGKTE +L A +L + Sbjct: 287 ------FGFFPNNIQIALHDVISQSKEPGIFILESAMGSGKTEASLIAAEQLANLTGRSG 340 Query: 340 VIFALPTQATANAMLTRMEASASHL----FSSPNLILAHGNSRFNHLFQSIK-------- 387 V F LPTQAT+N M R+E ++ L L HG + N + ++ Sbjct: 341 VFFGLPTQATSNGMFRRVEDWLKNVNSDFQGEIGLRLVHGKAELNADYAHLQHGMQNMND 400 Query: 388 --SRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIG 445 V W + K L V T+DQ L++ L KH +R LG+ Sbjct: 401 GCESTSNSNDVNNNGVILNDWFT-GRKTAMLDDFVVGTVDQFLLASLKQKHLMLRHLGLS 459 Query: 446 RSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPV 505 + V+I+DEVHAYD YMN LE L A G V+LLSATLP K++++L+ Y Sbjct: 460 KKVVIIDEVHAYDAYMNKYLEESLIWMAAYGVPVVLLSATLPAKRRKELIKAYMCGLFGF 519 Query: 506 E-----------NNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDL 554 + YPLI + N ++ + + S++ + D Sbjct: 520 NWRECDKSNVDFETNNYPLITYSDKNCVKQ-KFIENDASDNKSVSVRK----ITDDNLHE 574 Query: 555 TMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKEN 614 +++ + + N G +I N V AQ Y + + ++ + H++F DR KE Sbjct: 575 SLVGELKSLLNNGGIAGIIVNTVKRAQEIYNACVDEFSDD-EVIVIHSQFIATDRVRKEQ 633 Query: 615 RVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYR 674 ++ + GKN R I++ TQV+EQSLD+DFD L T P DLL QR GRLHRH R Sbjct: 634 QICNMIGKNAHRPARAIIIGTQVLEQSLDIDFDVLFTDLAPIDLLLQRAGRLHRH-TIER 692 Query: 675 PAGFEIPVATIL-LPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDS 733 F P+ +L D + + + ++ RTQ ++ + + + + Sbjct: 693 SETFAEPILYVLGTSDRYEFDKGSESIYSKYLLMRTQYYLPNV----INMSHDISRLVQI 748 Query: 734 IYDDAEMDEPEWVG------------------NGMDKFESAECEKRFKARKVLQWAEEYS 775 +Y D ++ E + + + E + ++ Sbjct: 749 VYGDNPLELQEDLKDVYAVAKREHDSVRNSNESAAKTYRIENPESEIGEKSIVGLLTNSI 808 Query: 776 LQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDG--QVYEDLSHEQQYEALALNRVNV 833 ++DE A R+ S+ ++ + SG L + +++ + LA V + Sbjct: 809 TNESDEFACAQVRNSGESIEVIAVKRVGSGYGTLHDCKDISQNIDDVEVAMKLAQETVGL 868 Query: 834 PFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNS 868 P+ + + V + L KQN W Sbjct: 869 PWMFTLNSDRVDETIAELERIRKQN-QFKNWDNQP 902 >UniRef50_Q4JWJ6 Putative uncharacterized protein n=3 Tax=Corynebacterium jeikeium RepID=Q4JWJ6_CORJK Length = 950 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 240/926 (25%), Positives = 358/926 (38%), Gaps = 125/926 (13%) Query: 14 SSKSLTKGNDIH---LLIYHCLDVAAVADCWWDQS--VVLQNTFCRNEMLSKQRVKAWLL 68 +S L K D H L+ H +D AVA WD ++ R+ L + +++ + Sbjct: 26 ASAFLAKSGDEHGPMSLVQHMVDSGAVATYLWDTWFSPQTKDFLSRSTRLPPEHIRSLAV 85 Query: 69 FFIALHDIGKFDIRFQYK-------SAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYW 121 F +A HD+GK F K + + N P + + H Sbjct: 86 FLVAAHDVGKISGPFLRKLRSPETNAPLLYPLENAGIPIPDLTPDEDVANLAHPLYSREL 145 Query: 122 FNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLA 181 + + + V HHG++ + R + + Sbjct: 146 LKRWLKTHGLKAPV-------------ALSLTQTVEAHHGWLTTA-----GRKAVTTFVN 187 Query: 182 SYAAQDKQAREEWISVLEAL-FLTPAGLSINDIPPDCS-SLLAGFCSLADWLGSWTTTNT 239 SY + + A +E + L + + PA + PP + ++ GF + DWL S T Sbjct: 188 SYPPEWQSAVDEILDTLASTAHVQPALDGLEGKPPTTAIQIITGFTVMCDWLASNTDFFP 247 Query: 240 FLFNEDAPSDIN--------ALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGY 291 F+ I L T F+ +D +++ E V Sbjct: 248 LRFSGSQADRIKLGMAKAKFDLHTEFKHFSEDPTQIAEN----------YRVSFAWPESA 297 Query: 292 QPRQLQVLVDAL----PVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQ 347 PR +Q V L P L +IEAPTG GKTE AL A A I A PT Sbjct: 298 TPRPVQFAVAELLNSNSPGPTLLIIEAPTGEGKTEGALQAALLFAQHNHASGAILAAPTM 357 Query: 348 ATANAMLTRMEASASHLFSSP---NLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCC 404 ATAN + R ++ + +L LAH +R N ++ ++ I E + V Sbjct: 358 ATANGLFKRFSCWVENITENSAVSSLYLAHSKNRLNKDYRKLRYSDIGEDCADHGTVIAT 417 Query: 405 QWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGL 464 WLS K L V TIDQVL+ L ++H +R L + V+I DEVHAY TY N Sbjct: 418 DWLS-GRKNGLLSNFVVGTIDQVLMMALQIRHSMLRHLALAGKVVIFDEVHAYSTYTNEY 476 Query: 465 LEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHT---DPVENNSAYPLINWRGVNG 521 L L+ A G VILLSATLP +K++L+ YG D YPL+ G Sbjct: 477 LAETLRWLAAYGVPVILLSATLPTSRKKELVTAYGGQMHKNDLALAGEGYPLLTLVTEEG 536 Query: 522 AQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQ 581 + P+ + + I + D + +LT L + + G V +ICN + AQ Sbjct: 537 VSEQAVTPRPDDMHAKVEI------IDDSVEELTRL--VTELCSDGGVVLVICNTIKRAQ 588 Query: 582 VCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVG----RILVATQV 637 + L + ++ L H+ FT DR E +++ G +R G RI+ TQ Sbjct: 589 EAFTALDSVFPD--EVRLHHSAFTGLDRARHEEDLLNELGPASQRKQGRPPLRIVCGTQT 646 Query: 638 VEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRK--YRPAGFEIPVATI-----LLPDG 690 +EQSLD+D D LIT P DL+ QR GRLHRH R RP I P Sbjct: 647 LEQSLDIDADALITDIAPMDLIIQRAGRLHRHQRPDSDRPEKLRDARIYIRGVEETTPVP 706 Query: 691 EGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYD-DAEMDEPEWVGNG 749 E+IY + ++ Q E+ P Q + YD DA+ + PE Sbjct: 707 IWDTGTEYIYDDALLLTTYQLLSTEVVETGFRRPSDVPQLVQRAYDLDADHNFPEAWAA- 765 Query: 750 MDKFESAECEKRFKARKVLQWAEEYSLQDNDET---------------------ILAVTR 788 ++E ++ R K ++ + + DET A R Sbjct: 766 --RWEESKTSSRGKDDSDKSRSKVFRIPSPDETGKRLDSLFEMLVHDRSEEEIKATASVR 823 Query: 789 DGEMSLPLLPYVQTSSGKQLLDGQ-------VYEDLSHEQQYEA--LALNRVNVPFTWKR 839 D + S+ ++P V G + L G V ED + A LA + V +P + R Sbjct: 824 DADNSIEIIPIVDDEYGYRPLPGLNNDQPECVVEDTTIPNFDTAFQLAASTVRLPTMFTR 883 Query: 840 S---FSEVVDEDGLLWLEGKQNLDGW 862 S + VD Q +GW Sbjct: 884 SDKVWDRTVDA------LEDQTPEGW 903 >UniRef50_A0LM50 CRISPR-associated helicase, Cas3 family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LM50_SYNFM Length = 854 Score = 549 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 230/850 (27%), Positives = 355/850 (41%), Gaps = 84/850 (9%) Query: 5 KYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVA-DCWWDQSVVLQNTFCRNEMLSKQRV 63 + + +WGK+S GN +H + H LD VA + Q + ++ + Sbjct: 4 EDVFRFWGKTS-----GNVVHPAVCHMLDTGIVACELLMVQPHGFISKLADEFGITTDAL 58 Query: 64 KAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFN 123 F ALHDIGK FQ K P L+ P F+ + + Sbjct: 59 PQLAAFLAALHDIGKISPGFQAKR-----------PDLSAPLKLEGYVFSRADEDRHTLS 107 Query: 124 QDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASY 183 L D D+ A+ HHG + + Sbjct: 108 TLETLPDLLIDCLQCEDSL------AIALSRALAAHHGVFTGQE-----------AQKVG 150 Query: 184 AAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFN 243 A + +AR + L LF + + +LAG S++DWL S +L Sbjct: 151 AGKWIKARRAALEFLSRLFWDKSLTGLGFPSTPALVILAGLVSVSDWLSSAEENFPYLTC 210 Query: 244 EDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDAL 303 LR Y DR Q A ++ + H L D P Q + Sbjct: 211 P-----RPDLREYVADRTQKARELVSRLRFDVSSPAATEFHQLFDFT-SPNPSQTVTLQT 264 Query: 304 PVA---PGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEAS 360 P L VIE+P GSGKTE A A L + + +ALPTQAT NAML R Sbjct: 265 VNELHHPMLVVIESPMGSGKTEAAQAVYAHLSCEAGLRGMYYALPTQATGNAMLPRTARF 324 Query: 361 ASHLF--SSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQ 418 + L + L L H N+ N ++ ++ I+ E V W + + K+ L Sbjct: 325 LTRLGLETGTELHLLHTNADLNQDYERLR---ISSLNAEPGDVSASSWFT-ARKRGLLAA 380 Query: 419 IGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGS 478 GV T+DQ L++ L V+H F+R G+ +L++DEVHAYD YM + ++ A S Sbjct: 381 HGVGTLDQALLAALKVRHFFVRLFGLAGKLLVLDEVHAYDAYMVEEIYRLIGWLAHCHTS 440 Query: 479 VILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRF 538 V+LLSATLP +++KL+ + + V ++ YP + ++GA AHP + Sbjct: 441 VVLLSATLPKARRKKLIQAFRPEVE-VPDDIRYPCVTGVDISGA----FAAHPIEGLKPD 495 Query: 539 SIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDID 598 +I EP+ +L ++ G I N V AQ ++ L+ ++ Sbjct: 496 TIYVEPVIAESTDKPARILSLLLEKLADGGCAACIMNTVGEAQDLHELLRHHFPAD-EVL 554 Query: 599 LFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADL 658 LFH+RFTL + E+ ++S + +GKR I++ATQV+EQSLDVDFD +IT P DL Sbjct: 555 LFHSRFTLERKLRIEHDILSRYASDGKRPHRGIVIATQVIEQSLDVDFDLMITDLAPIDL 614 Query: 659 LFQRLGRLHRHHRKYRPAGFEIPVATILLPDGE----GYGRHEHIYSNVRVMWRTQQHI- 713 L QR GRLHRH R RP +L+P+ +G E++Y+ ++ +T Sbjct: 615 LLQRAGRLHRHER-ARPQLLRPRNLWVLMPEFRSRLPDFGGSEYVYTP-DILLKTALLFS 672 Query: 714 --EELNGASLFFPDAYRQWLDSIY-DDAEMDEPEWVGNGMDKFES------------AEC 758 E+L+ + P ++ +Y DD + PE + M +E+ A C Sbjct: 673 AEEDLSHLEVSIPTGVSALIECVYGDDFPPEVPEHLLGPMRGWEAKRLGDETSQTFFAAC 732 Query: 759 EKRFKARKVLQ---WAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYE 815 +A+ L+ + + S+ DND+ VTR + P + V +G+ L E Sbjct: 733 SALIEAKACLRDPDYLGQISM-DNDDDCAIVTRL---TRPNVMLVVVENGRCLTVADKAE 788 Query: 816 DLSHEQQYEA 825 + A Sbjct: 789 ERKLFSSTVA 798 >UniRef50_Q53VY2 Putative uncharacterized protein TTHB187 n=1 Tax=Thermus thermophilus HB8 RepID=Q53VY2_THET8 Length = 920 Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 238/921 (25%), Positives = 367/921 (39%), Gaps = 130/921 (14%) Query: 1 MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWD-QSVVLQNTFCRNEMLS 59 M + W KS GN H L+ H LD AAVA + + + + L Sbjct: 1 MSVEEAALALWAKS------GNPFHPLLAHMLDTAAVALAVLRMEPPRTRALYAEDWGLP 54 Query: 60 KQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGL 119 ++ AW + LHD+GK FQ E ++ A P ++ HG Sbjct: 55 EEGALAWAAALVGLHDLGKASPVFQAGWEEGKERVQRAGL----PFGELLDWVAHGVFTE 110 Query: 120 YWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPAS 179 + + P + A+ HHGF +++++ ++R + Sbjct: 111 LFLRR-------------LLKEKGLPERAANDLAAALGAHHGFPANAEEKSRARRHLRTE 157 Query: 180 LASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNT 239 + + EE L A P + P+ + S ADW+ S + Sbjct: 158 DPLWKEARRWLLEEVFRRLGAPL--PPSQGNGEARPEAVLRVMALASFADWVASDPSLFP 215 Query: 240 FLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVS-NKRCYEGVHALLDNGYQPRQLQV 298 + + Y ++ + A L G + K L +P LQ Sbjct: 216 YGRDPRRGD-------YLKEALRLAQEALNRLGWPAFAKAQRREFGELFPYIPKPNALQE 268 Query: 299 LVDALPVA---PGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLT 355 V AL P L ++EAP G GKTE AL L + ALPTQATAN + Sbjct: 269 SVPALLEGACTPVLLLVEAPMGMGKTEAALYAHHLLQAGLGHRGLYVALPTQATANGLFP 328 Query: 356 RMEASASHLFSSP--NLILAHGNSRFNHLFQSIKSRAITEQ--GQEEAWVQCCQWLSQSN 411 R+ L L L HG + N + + RA Q +EE W S + Sbjct: 329 RVRGFLERLGEGSRLELQLQHGTALLNPHYAGLLERAAPRQVGEEEEGGAVASAWFS-AR 387 Query: 412 KKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKA 471 K+ L GV T+DQ L+ VL VKH F+R G+ V+++DEVHAYD Y +GLL+A+L+ Sbjct: 388 KRAMLAPYGVGTLDQALLGVLRVKHHFVRLWGLMNRVVVLDEVHAYDVYTSGLLQALLRW 447 Query: 472 QADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHP 531 +G S ++++ATLP +++ LL+ + ++ YP + G R Sbjct: 448 LRALGSSAVVMTATLPPSRRRALLEAWAGEEVEGQDLGPYPRVVLVGEGVKAR------- 500 Query: 532 EQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELN 591 LPP ++ L ++ D+ L + + A GA V I N VD AQ Y+ L E Sbjct: 501 -SLPPAREVEVALEVLREV--DVEPLAQRLKGALPGA-VGAIVNTVDRAQDLYRALGEGT 556 Query: 592 NTQVD---------------------------------------IDLFHARFTLNDRREK 612 ++ + L HARF +R + Sbjct: 557 PLTLEELARRLGGISGGQAWEEVRQALPERGGEVVGKVLTDGTLVFLLHARFPAEERALR 616 Query: 613 ENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRK 672 + V++ FGK G R ILVATQV EQSLD+DFD L T P DLLFQR GRLHRH R Sbjct: 617 GSVVLALFGKGGPRPPRAILVATQVAEQSLDLDFDLLYTDLAPIDLLFQRSGRLHRHERP 676 Query: 673 YRPAGFEIPVATILLPDGEGYGR---HEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQ 729 RP P + +P+ +G+ + +Y + V+ T + + + L P Sbjct: 677 -RPEEHARPRLLLGVPEDLDFGKPLYWDKVYEDY-VLLATWRALSGRD--RLRVPGDLEA 732 Query: 730 WLDSIYD-DAEMDEPEWVGNGMDKFESAECEKRFKA-------------RKVLQWAE--- 772 L+ IY+ + PE + K A E+R + R + W E Sbjct: 733 LLEEIYEGENPESFPEGLRERAKKSLKALQERRDREANTARRLSLSELDRLLAYWDEGAL 792 Query: 773 --EYSLQDNDETI---LAVTRDGEMSLPLLPYVQTSSG---------KQLLDGQVYEDLS 818 + L+D++E +TR G+ S+ ++P + G + L G+V + + Sbjct: 793 VAQERLEDDEEKAETQRLLTRLGDPSVAVVPLFRVGEGLFLDREGRRRAPLKGEVSREEA 852 Query: 819 HEQQYEALALNRVNVPFTWKR 839 A+ L+R +P + Sbjct: 853 EALFRRAVRLSRFPLPQELLK 873 >UniRef50_C2BEU2 CRISPR-associated helicase n=1 Tax=Anaerococcus lactolyticus ATCC 51172 RepID=C2BEU2_9FIRM Length = 920 Score = 545 bits (1403), Expect = e-153, Method: Composition-based stats. Identities = 209/938 (22%), Positives = 363/938 (38%), Gaps = 109/938 (11%) Query: 1 MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVV--LQNTFCRNEML 58 ME + W K ++ + L H D V ++ + +++ + + Sbjct: 1 MEVMEKFL--WAKKNR-VKNIPMWLPLQVHLADTREVCGYLYNHWLSQGVRDLLMDSVVT 57 Query: 59 S----KQRVKAWLLFFIALHDIGKFDIRFQYKSAESWL----------KLNPATPSLNGP 104 + + F A HD+GK FQ K + + +N ++ Sbjct: 58 DVEDKDELLLNLCRFLGATHDLGKATPIFQVKKSFNGDFELDNLVLEKLVNAGFKDIDKF 117 Query: 105 STQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFIL 164 S H +G Y + ++ F + HHG + Sbjct: 118 SLTKRENIRHNISGQYLLTKFGVN---------------------FCVANIIGAHHGRPI 156 Query: 165 HSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALF---LTPAGLSIND----IPPDC 217 ++ D +SL + W ++ +++F L G S + I Sbjct: 157 SEKEADI-CNSFASSLCQEDKTSSERALFWQNLQKSIFDKALIGCGFSGAEDLPLISQPG 215 Query: 218 SSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNK 277 +LAG +ADW+ S + ++ + + F+ D + + Sbjct: 216 QVILAGLLIMADWITSNENYFPLIAIDEVEVSPDRVEIGFKKWLDDRADA-----WTPHY 270 Query: 278 RCYEGVHALLDNGYQPRQLQVLVDAL---PVAPGLTVIEAPTGSGKTETALAYAWKLIDQ 334 + +P+ Q + PG+ +IEAP G GKTETAL L + Sbjct: 271 YFDGIYNERFPFIEKPKDTQKKISKAISNTDEPGIFIIEAPMGIGKTETALIAVEDLAKK 330 Query: 335 QIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQ 394 + F LPTQAT+N + TR+ H+ +L L HG ++ N F + Sbjct: 331 TNRTGMFFGLPTQATSNGIFTRVREWLDHIEGEKSLRLIHGKAQLNDEFSKLPKSRNIHG 390 Query: 395 GQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEV 454 G E V +W + K L V T+DQ+L+ L KH +R LG+ V+++DEV Sbjct: 391 GDE---VGVNEWFA-GRKVSILDDFTVGTVDQILLVALKQKHLMLRHLGLANKVVVIDEV 446 Query: 455 HAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTD----------P 504 HAYD YM+ L L+ V++LSATLP+ ++ LL+ Y + + Sbjct: 447 HAYDAYMSVFLYRALRWLGAYKVPVVILSATLPISKRNALLEAYMIGAELGYDRLPKPEG 506 Query: 505 VENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAA 564 E N AYPL+ + ++F + + I + ++ L L + Sbjct: 507 FEINEAYPLLTYNDGASIKQF--ADFKKDAGRSYKIIKKSKGESEDLVSL-----IKENT 559 Query: 565 NAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNG 624 G V ++ N V AQ ++ E+ + ++L H+ F DR +KE +I GKNG Sbjct: 560 AQGGVVGVMVNTVRKAQNFARKCIEVFG-EDRVELLHSSFISTDRYKKEKNLIETIGKNG 618 Query: 625 KRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVAT 684 R +I++ TQV+EQSLD+DFD LIT P DL+ QR+GRLHRH RP + P+ Sbjct: 619 NRPDFKIVIGTQVIEQSLDIDFDILITDLAPMDLILQRMGRLHRHKETKRPENLKNPMVY 678 Query: 685 ILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPE 744 +L G + + + +++RT+ ++ E + P+ + +Y D ++D Sbjct: 679 VLNCGGYDFDKGSSFVYSEYILFRTEYYLPER----INLPNDISHLVQLVYGDGDLDLDG 734 Query: 745 WVGNGMDKFESAECE----KRFKA---------------RKVLQWAEEYSL--QDNDETI 783 + +K+ E K F+A + + W + + + +D Sbjct: 735 DLQKLYEKYRDNRDEQIDDKEFRANVYRLDKPLKKIGDKKNLSAWLKNSNKMAESSDVKA 794 Query: 784 LAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWK----- 838 A RD ++ ++ G + D D + +A + +P Sbjct: 795 NAQVRDSSDTIEVIALKACQGGYEFFDKVGTLDPYDNKTAMEIAKRTIKLPNAVYFDKEN 854 Query: 839 -RSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTG 875 +V++E +LE D W NS+ I + Sbjct: 855 GYIIDKVIEELEKYYLENLSAWDDQAWLKNSLAIIFDS 892 >UniRef50_D0Y922 CRISPR-associated helicase Cas3 n=2 Tax=Dehalococcoides RepID=D0Y922_9CHLR Length = 892 Score = 544 bits (1402), Expect = e-153, Method: Composition-based stats. Identities = 233/846 (27%), Positives = 355/846 (41%), Gaps = 103/846 (12%) Query: 8 CHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWL 67 W K+ + H L+YH LDVAAVA W+ ++ ++ R +A Sbjct: 7 LKLWAKTGRG--GDLYYHPLLYHMLDVAAVATHMWE--LLSEDQRKRIGYTLGNEARAIT 62 Query: 68 LFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSL 127 LF HDIGK FQ + + L+ T + Q HG N+ Sbjct: 63 LFLAGGHDIGKASPGFQQQVPQ----LSELTDLQVSVNDQNR---PHGFVSACVLNRFFT 115 Query: 128 SEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQD 187 + + GHHG S D R + + Sbjct: 116 T----------------------VLGQIAGGHHGIFPRSLDLRMGRDILGNR--EWEIAR 151 Query: 188 KQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAP 247 +E VL+ I P LLAG S+ADW+GS F P Sbjct: 152 NGLLQELAKVLKIDISDDTKCKPKIIDPFIIPLLAGLISVADWIGSNQD---FFPCLTKP 208 Query: 248 SDINAL--RTYFQDRQQDASRVLELSGLVSNK-RCYEGVHALLDNGYQPRQLQVLVDALP 304 + L YF+ + A + L G + E + +G+ P LQ ++ + Sbjct: 209 GQLPELVGDKYFEVAKDRADKALHELGWMPGVIFAKEAPFTHVFSGFIPNSLQNSIEDIA 268 Query: 305 ---VAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASA 361 +P L +IEAPTG GKTE AL A + + A + A+PTQAT+NAM R++ Sbjct: 269 IKQTSPYLMIIEAPTGQGKTEAALYAADLALCRGFARGIYIAMPTQATSNAMFKRVQVDY 328 Query: 362 ---SHLFSSPNLILAHGNSRFNHLFQSIKSR------AITEQGQEEAWVQCCQWLSQSNK 412 NL L HGN+ + + + A T+ G ++ W + + K Sbjct: 329 LKNRRHKGKLNLQLVHGNALLAGMGEVREGEISDFKIADTDTGDTNTDMEAQSWFT-AKK 387 Query: 413 KVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQ 472 + L GV TIDQ L+SVL +H F+R G+ V+I DE+HAYD YM +LE +L+ Sbjct: 388 RPLLSPFGVGTIDQSLLSVLQTRHWFVRLFGLAGKVVIFDEIHAYDAYMITILERLLQWL 447 Query: 473 ADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPE 532 A++ +VILLSATLP +++ L+ Y N YP I R + Sbjct: 448 AEIDCTVILLSATLPEARRKALIYAYSGQNS--SENKCYPRITL----AQSRHYINQETN 501 Query: 533 QLPPRFSIQPEP---ICLADMLPDLTMLE-RMIAAANAGAQVCLICNLVDVAQVCYQRLK 588 +L + E I L DL +L + G +IC+ VD + ++ L+ Sbjct: 502 ELIVCKEVSVEDSHCIYLNFSRNDLEILAGELTRKLEHGGCAAVICDTVDRSIEVFRYLQ 561 Query: 589 ELNNTQVDIDLFHARFTLNDRREKENRVISNFGK----------NGKRNVGRILVATQVV 638 N + + LFHAR RRE+E+ V+ FGK N R +LVATQV+ Sbjct: 562 A-NMHETECLLFHARTLQVWRREREDEVLRKFGKGTKQHDGSYTNPDRPFRAVLVATQVI 620 Query: 639 EQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEG------ 692 EQSLD+DFD + ++ P DLL QR+GRLHRH R RP G E+P TIL G Sbjct: 621 EQSLDLDFDLMFSEIAPVDLLLQRIGRLHRHSR-TRPEGLEMPQFTILCDGNRGGAPPDT 679 Query: 693 YGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYD-DAEMDEPEWV----G 747 +G++ + ++ RT + A + P + ++ +Y D E+ P+W+ Sbjct: 680 FGKNIEHIYDRYILLRTWLVVR--GKAMIEVPAETEKLIEKVYGTDEEICGPDWIEALEK 737 Query: 748 NGMDKFESAECEKRFKARKVL-------QWAEEYS---LQDNDETI----LAVTRDGEMS 793 + E ++ +R ++ +++ D+D + A TR+G+ S Sbjct: 738 AKRNLVHEQEESQKAASRLLICPPCDSEDIVRQFNCELFDDDDPEVHTAIRAATREGDPS 797 Query: 794 LPLLPY 799 + L+ Sbjct: 798 IMLVMV 803 >UniRef50_Q67RP4 Putative helicase n=1 Tax=Symbiobacterium thermophilum RepID=Q67RP4_SYMTH Length = 936 Score = 541 bits (1394), Expect = e-152, Method: Composition-based stats. Identities = 227/858 (26%), Positives = 342/858 (39%), Gaps = 100/858 (11%) Query: 10 YWGKSSKSLT---KGNDIHLLIYHCLDVAAVADCWWDQSVV--LQNTFCRNEML-SKQRV 63 W K+++ + H L H +D A VA W + L++ R L + Sbjct: 17 IWAKTARGVELAEGEGHYHPLCCHMIDTAMVAWRMWRYVLPQRLRDQIRRQLGLQTDDEA 76 Query: 64 KAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFN 123 W+ FF LHD+GK F + E W L S H + Sbjct: 77 GRWIAFFAGLHDLGKATPAFAKQWPEGWRLLTEQKYGAASGSESK----PHYVLTTFLLE 132 Query: 124 QDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASY 183 P P + HHG + D + Sbjct: 133 SLLEELGL-------------PGAVAVPVAAVIGAHHGLFPTATDLRHAERYAGK----- 174 Query: 184 AAQDKQAREEWISVLEALFLTPA-GLSINDIPPDCS--SLLAGFCSLADWLGSWTTTNTF 240 A+ ++A+ + +L + + D+ S +LAG S+ADW+ S T F Sbjct: 175 -AKWQEAQAHLVRLLAHVLGVDRLNVPTGDLWQANSLLVILAGLTSVADWIASNHTYFPF 233 Query: 241 LFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLV 300 D L +Y + + A L G P LQ V Sbjct: 234 ------AGDRVRLPSYARQARWRAWMALHQLGWFHRPVAMAPRSFTELFDKVPNHLQKQV 287 Query: 301 DALP---VAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRM 357 A+ P L ++E P G GKTE AL A L + FALPT AT+N M R+ Sbjct: 288 LAIADRLSGPSLVLLEYPMGGGKTEAALYLADSLAVAAGQKGLYFALPTMATSNQMFGRV 347 Query: 358 EASASHLFSSP--NLILAHGNSRFNHLFQSIKSRAITEQGQEEAW--------------- 400 + F N+ L HG++ N F+ +++ + E + A Sbjct: 348 NRYLVNRFPGSRINVQLLHGHASLNAEFELLRAAHLQELERRRAGREQELAAVGESTAAT 407 Query: 401 VQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTY 460 V +W + K+ L G+ TIDQ L+SVL KH F+R G+ V+I+DEVHAYDTY Sbjct: 408 VLAAEWFTY-KKRGLLAPYGIGTIDQALLSVLQTKHFFVRLFGLAGKVVILDEVHAYDTY 466 Query: 461 MNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTD---PVENNSAYPLINWR 517 M LL +L A G SV+LLSATLP ++ L+ Y P E YP + W Sbjct: 467 MQTLLTRLLTWLAACGTSVVLLSATLPAHTRKALVAAYAAGRGLPAPAEPEVTYPRVTWL 526 Query: 518 GVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAA-NAGAQVCLICNL 576 + H E R I L D R + A G +I N Sbjct: 527 TDMESN----AVHIEGAATR------TITLRRYAQDDEGWMRALQEALVDGGCAAVIVNT 576 Query: 577 VDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKN-GKRNVGRILVAT 635 V AQ YQ+L++ + ++ LFHAR+ +DR +E V++ FG R +LVAT Sbjct: 577 VSRAQAVYQKLQDYFPPE-ELCLFHARYPFDDRMAREREVLTRFGPGIADRPRRAVLVAT 635 Query: 636 QVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEG--- 692 QVVEQSLD+DFD L+T P DL+FQR GRL RH R++RP GF P +L+P + Sbjct: 636 QVVEQSLDLDFDLLVTDLAPVDLVFQRSGRLWRHRREWRPPGFTEPTLWLLMPPLDEQGV 695 Query: 693 --YGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIY--DDAEMDEPE---- 744 + R + + M R+ + + + L PD ++++Y D + PE Sbjct: 696 PQFERGSRLIYDHHTMLRSWLVLAQQD--HLCIPDQLEPMVEAVYRPADPPEELPEPLRA 753 Query: 745 -WVGNGMDKFESAECEKRFKARKVLQWAEEYSLQ----------DNDETILAVTRDGEMS 793 W+ +++ R+ + + L+ ++ + A+TR G ++ Sbjct: 754 LWLQTRAVLEAEQARDQQEARRRYIPDVHQNLLEMVLTDLEEEGESHPAVQALTRLGGIA 813 Query: 794 LPLLPYVQTSSGKQLLDG 811 + + V+ G+ G Sbjct: 814 VTAVCLVEAD-GRLWAPG 830 >UniRef50_D1YEE0 CRISPR-associated helicase Cas3 n=1 Tax=Propionibacterium acnes J139 RepID=D1YEE0_PROAC Length = 931 Score = 541 bits (1393), Expect = e-152, Method: Composition-based stats. Identities = 234/925 (25%), Positives = 350/925 (37%), Gaps = 116/925 (12%) Query: 11 WGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFF 70 WGK+++ D ++ H D A V W + + + ++ + ++ F Sbjct: 13 WGKTNEV----GDWLPVVQHLEDAAGVMAEVWRLQPQSIRSLLADTLGGERAAQTFVCFL 68 Query: 71 IALHDIGKFDIRFQYKSAESW------LKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQ 124 +HD+GK F +K+ L + R HGA G Sbjct: 69 AGIHDVGKISADFAFKARLPRTNGTSTSYLCDQMERQGFVIGKPDRPIPHGALGQTHVTS 128 Query: 125 DSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYA 184 LS + AP V GHHG S D +K SLA Sbjct: 129 WLLSR---------YPDAPRARRCARNIASIVGGHHGTNPTSADVEKVEL----SLAREE 175 Query: 185 AQDKQAREEWISVLEALFLTPAGLSI---NDIPPDCSSLLAGFCSLADWLGSWTTTNTFL 241 K R+E + + A L + I + + DW+ S T + Sbjct: 176 HLWKATRDEVLDTMAAHTGADEFLPTWMGSPISIQTQIVCEALVIVTDWIASSETLFPYD 235 Query: 242 FNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQ------PRQ 295 F P DR + A L+L C V L + P Sbjct: 236 FATPTP-----------DRVRRAVARLQLPHPWQPAPCPGSVDELFGTSFPSLTHGAPNA 284 Query: 296 LQ---VLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANA 352 +Q V V PGL IEAP G GKTE AL A L ++ + F LPT AT+N Sbjct: 285 MQRVAVEVADTMPEPGLLAIEAPMGHGKTEAALMCAQVLAERFGLGGIFFGLPTMATSNP 344 Query: 353 MLTRMEASASHLFSSP--NLILAHGNSRFNHLFQSIKSR----AITEQG---QEEAWVQC 403 M R+ + + ++ LAH + N +Q + A+ ++G Q EA Sbjct: 345 MFGRVREWLDAVPAKDPSSISLAHSKAGLNEEYQQLMPWNATMAVYDEGAGTQREASAIV 404 Query: 404 CQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNG 463 +W K+ L V TIDQ L + L KH +R LG+ V+I+DEVHA D YM Sbjct: 405 HEWF-LGRKRAILADHVVGTIDQALFTGLKAKHVVLRHLGLASKVVIIDEVHAADVYMRE 463 Query: 464 LLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTD------PVENNSAYPLINWR 517 L+ VL+ VIL+SATLP Q+ +L Y + YP++ Sbjct: 464 YLKVVLEWLGAYRTPVILMSATLPPAQRHELALAYAKGRHGRNAQVVLTTTDEYPIVTTI 523 Query: 518 GVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLV 577 AQ+ + P + Q + D L +L L + + G + +I + V Sbjct: 524 SDGVAQQGTSTSAPGR-------QVVVRSMGDSLDELINL--IEDKMSDGGCIGIIRDTV 574 Query: 578 DVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGK-RNVGRILVATQ 636 AQ + L + ++ L H+RF R +E ++ G++G+ R ++V TQ Sbjct: 575 ARAQDTFDAL--DSRLDCEVVLVHSRFLAPQRARREADLVRRLGRSGESRPDRLVVVGTQ 632 Query: 637 VVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATI-----LLPDGE 691 V+EQSLDVDFD LI+ P DLL QR+GRLHRH R RP + L DG Sbjct: 633 VLEQSLDVDFDLLISDIAPIDLLLQRIGRLHRHDR-QRPVPLREATCLVTGVDAWLEDGP 691 Query: 692 GYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMD 751 + R + + RT ++ L+ + P + + Y++ W G Sbjct: 692 QFSRGIELVYEPDFLLRTAAILDGLSSGIVNVPQDIPRLVRIAYEETFTWPDAWASRG-- 749 Query: 752 KFESAECEKRFKARKVLQWAEEYSLQD------------NDETI-------LAVTRDGEM 792 E A E R + + A Y L D + +T+ A RD E Sbjct: 750 --EDAALESRSRHKAATSRAMTYRLSDPFGASSLMKGITDMKTVDPENTRGHASVRDSED 807 Query: 793 SLPLLPYVQTSS-GKQLLDGQVYEDLSHE--------QQYEALALNRVNVPFTWKRSFSE 843 S+ ++ QT+S G L+DG + A+A V +P RS S Sbjct: 808 SIEVIVVQQTNSGGYHLMDGIGEFSGADLPLFGAPGGDLARAVASCTVTLP----RSLSN 863 Query: 844 VVDEDGLLWLEGKQNLDGWVWQGNS 868 D D + +D WQ + Sbjct: 864 PWDIDQTITELENAPIDLSSWQSSP 888 >UniRef50_Q0W588 Putative CRISPR-associated helicase n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W588_UNCMA Length = 889 Score = 541 bits (1393), Expect = e-152, Method: Composition-based stats. Identities = 239/935 (25%), Positives = 371/935 (39%), Gaps = 109/935 (11%) Query: 1 MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSV--VLQNTFCRNEML 58 M ++ + W KS + H L+YH +D VA V+ + F + Sbjct: 1 MAEYEDLLKIWAKS-------DPFHPLLYHMIDAGNVALSLLQTPAFKVVGDKFSKATGC 53 Query: 59 SKQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAG 118 ++ WL + +A+HDIGK D FQ + L ++ +KF H + Sbjct: 54 PREACDVWLAYLVAMHDIGKCDPNFQLLNDGYAAILREQGMPF---PSEPDKKFRHERSS 110 Query: 119 LYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPA 178 W + A S ++ HH Sbjct: 111 SEWVR-------------GLLEEAEWTRRSRNTISNSILLHH------------SRSSDG 145 Query: 179 SLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTN 238 L S + ++ +F + LL+G L+DW+ S Sbjct: 146 ELLSSPEIWDTIKRRLEEEIKRVFDYDNEPVDFSDNSEAGLLLSGLIVLSDWIASN---E 202 Query: 239 TFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQP-RQLQ 297 + + + ++ + A L + VS G++ R +Q Sbjct: 203 ELMSCKGLECSVQDYALISRNCSERAITRLGFNVSVSWPENSSFSDVWPGGGFKELRPVQ 262 Query: 298 VLVDAL---PVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAML 354 + + P L +IEAP G GKTE + A +L+ + + ALPT AT+N M Sbjct: 263 RACVDIFQSEIKPRLLIIEAPMGEGKTEAGIYSAVQLLKEYDLSGMYVALPTAATSNQMF 322 Query: 355 TRMEASASHLFSSPNL--ILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNK 412 R A S + L HG S S +A E G + +W + +K Sbjct: 323 QRFNAFLDMHQSDKTVKARLVHGMSWLVDDASSFAVKA--ENGDGSDSYEMIEWF-KPSK 379 Query: 413 KVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQ 472 + + V TIDQ L+SVL VK F+R G+ VLI+DEVHAYD YM+ +L+ +L+ Sbjct: 380 RALIAPYSVGTIDQSLMSVLKVKFGFLRLFGLANKVLIIDEVHAYDAYMSTILKLLLQWC 439 Query: 473 ADVGGSVILLSATLPMKQKQKLLDTYGLHTDP---VENNSAYPLINWRGVNGAQRFDLLA 529 + + VI+LSATLP ++K +LL+ Y +D + + YPLI +G L+ Sbjct: 440 SCLQIPVIMLSATLPSEKKLELLEMYRTSSDEPGRFKPSMDYPLITIVNADGGIYEKLVP 499 Query: 530 -HPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLK 588 +++ R + + D++ L M + G +C+I N V AQ Y+R+K Sbjct: 500 GSSKRVNIRVTKHEGYLGDYDLIASLAMERSV-----NGGCICIIMNTVKGAQSVYERIK 554 Query: 589 ELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNG----------KRNVGRILVATQVV 638 L+ + + LFHARFT R E E + F K R ILVATQVV Sbjct: 555 NLSTGEHQVMLFHARFTAGRRDEIEKNALRLFDKRSLLEEFDPDYQARPKRAILVATQVV 614 Query: 639 EQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEG--YGRH 696 EQSLD+DFD +IT+ P DLL QR GRLHRH RK RP G +P +LLPDGE +G Sbjct: 615 EQSLDLDFDEMITEIAPIDLLLQRAGRLHRHDRKNRPTGP-VPQLHVLLPDGEKASFGSS 673 Query: 697 EHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDE-PEWVGNGMDKFES 755 E +Y V+ RT + E + + P + ++++Y + + D + Sbjct: 674 EKVYERY-VLLRTMDTLLERDLIEI--PSDIKTLVETVYRPYTEEISSASKTSSSDDLAA 730 Query: 756 AECEKRFKARKVLQWAEEYSLQDNDET-------------------ILAVTRDGEMSLPL 796 A + R + + A +Y + D + A TR G+ SL + Sbjct: 731 AYSDMRKRLHESEGLASKYLIADPNPKEFTINTYSLEEDEAGTKSYFKASTRLGDDSLRV 790 Query: 797 LPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVD----EDGLLW 852 + L V + L VN+P W ++ ++G W Sbjct: 791 VVLNDGEYSGILASKSVPP----VSVIREIMLKMVNIPRWWVNGYTPEQGYEPIQEGPAW 846 Query: 853 LEG----KQNLDGWVW---QGNSIVITYTGDEGMT 880 L+G K W GN +I + G+ Sbjct: 847 LKGISILKTISGSWKGTDDSGNHAIIINDDELGLR 881 >UniRef50_C7LYX0 CRISPR-associated helicase Cas3 n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LYX0_ACIFD Length = 922 Score = 540 bits (1391), Expect = e-152, Method: Composition-based stats. Identities = 236/894 (26%), Positives = 347/894 (38%), Gaps = 75/894 (8%) Query: 3 PFKYICHYWGKSSKSLTKGN--DIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLS- 59 P W K+S++ T+ H L H +D A VA W + E L Sbjct: 14 PIPPAFWLWAKTSRAPTEPPTYRWHPLAAHLVDAALVAQQLWAGWLSPSTKRWLGEPLGG 73 Query: 60 KQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGL 119 + +A HD+GK FQ + +L A +++ P Q K H A Sbjct: 74 EDHARALFALLAGCHDLGKATPAFQIQVDWLHPQLRDAGLAVDKPLPQ-RSKAPHALASA 132 Query: 120 YWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPAS 179 A + + GHHG+ ++ + P Sbjct: 133 -------------ATVQPLLAARGWSEPAIRGVAAILGGHHGWFPP-LGYEREPIKRPEL 178 Query: 180 LASYAAQDKQAREEWISVLEALF---LTPAGL-------SINDIPPDCSSLLAGFCSLAD 229 A + W + E LF + AG ++ LAGF LAD Sbjct: 179 YGLAGRPLGGAGDPWSAARERLFDLVVEVAGAQQVLGLAGTTELGSARRLALAGFVILAD 238 Query: 230 WLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKR---CYEGVHAL 286 W+ S +L + Y QQ A+ L G Sbjct: 239 WIASNEQLFPYLC-------LPYDDAYLHAAQQRAAEALVQLGWHGVANLGAVVGAPAFE 291 Query: 287 LDNGYQPR--QLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFAL 344 G+ P Q Q L GL +IEAP G GKTE ALA A L +Q L Sbjct: 292 HRFGFSPNALQRQTLEAVEQGDGGLVLIEAPMGMGKTEAALAAAEVLATRQGHGGAFIGL 351 Query: 345 PTQATANAMLTRMEASASHLFSSPNLI-LAHGNSR----FNHLFQSIKSRAITEQGQEEA 399 PTQAT+N M R L ++ LAHG ++ F L ++ A+ + A Sbjct: 352 PTQATSNQMFHRTRRWLEQLGPGTFVLELAHGRAQQVPAFRDLLENGAPSAVDVDEGDIA 411 Query: 400 WVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDT 459 V W + K+ L V TIDQ+L+ V+H +R +G+ V+I+DEVHAYD Sbjct: 412 RVTAEAWFT-GPKRRLLAPFVVGTIDQILLGTAKVRHVALRHVGLAGKVVILDEVHAYDA 470 Query: 460 YMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGV 519 YM+ L VL+ VILLSATLP + +L++ Y H+ P+ YP I Sbjct: 471 YMSVFLRRVLEWLGAERIPVILLSATLPPAVRARLIEAYAGHSTPL-GLVGYPSITTVST 529 Query: 520 NGAQRFDLLAHPEQLPPRFSIQPEPICLA-DMLPDLTMLERMIAAANAGAQVCLICNLVD 578 +G +A +++ E + + + +LE + A AGA + +I N V Sbjct: 530 DGHVTTTPVA---TDASSVTVRLEHLDEDPEDESSMPLLEMVAQMAEAGANILVIRNTVA 586 Query: 579 VAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVV 638 AQ Y+ + E + L HARFT DR KE+ + +FG+ G R G+++V TQV+ Sbjct: 587 RAQRTYRAVAERRPMGT-VHLLHARFTTADRLRKESWLAEHFGRGGTRLSGQVVVGTQVL 645 Query: 639 EQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEH 698 EQSLD+DFD L T P DL+ QR+GR+HRH RP GF P + G Sbjct: 646 EQSLDIDFDVLATDLAPVDLVLQRIGRVHRHRGTRRPVGFTEPRVIVTGFTRSPTGPPAF 705 Query: 699 IYSNVRV---MWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFES 755 +VRV + L SL PD + ++Y D ++ P W +G Sbjct: 706 PSGSVRVYGEHLLLRTAALLLARDSLTLPDDVPSLVAAVYGDDDVIAPAWHDHGARVAVE 765 Query: 756 AECEKRFKARKVLQW-------------AEEYSL----QDNDETILAVTRDGEMSLPLLP 798 + E+ + R+ Q+ E L D+D + A RD S+ + Sbjct: 766 WQSEQHERERRAEQFVISDPTRAGYLLELERIRLGDPEDDDDPRVQAAVRDSVPSIEVAI 825 Query: 799 YVQTSSGKQLLDGQVYEDLSHEQQ---YEALALNRVNVPFTWKRSFSEVVDEDG 849 S G L H EA+ + V +P + + + +G Sbjct: 826 ACVGPSPNIARFGTTEVSLEHPPTPDDVEAVLGSVVRLPSYLTEAATSLAVPEG 879 >UniRef50_B8IMR6 CRISPR-associated helicase Cas3 n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IMR6_METNO Length = 897 Score = 538 bits (1385), Expect = e-151, Method: Composition-based stats. Identities = 254/921 (27%), Positives = 379/921 (41%), Gaps = 76/921 (8%) Query: 7 ICHYWGKSSKSLTK-GNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKA 65 +WGK+ S G H + H LDVAA T + + ++A Sbjct: 4 FQTFWGKARPSKRSIGPRFHPVWAHSLDVAASGLALIRARPQAFMTLAQQLGWELEALRA 63 Query: 66 WLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQD 125 L +ALHDIGKF FQ + + P H AG Sbjct: 64 LWLHLLALHDIGKFSPLFQAAAPHCYPHCQIPWPE---DVVLKNLDPGHPTAGFVLLRDW 120 Query: 126 SLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAA 185 + GD + +E + GHHG D+ + + + + A Sbjct: 121 IDDGATPGDAPPLCAGWDWGETTL--LLEPILGHHGRPAAGPDRRRGWGHLFRPVGAAHA 178 Query: 186 QDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNED 245 A W +V L + S LAG +LADW+GS + + + Sbjct: 179 ----AFAYWRAVAALLPVPDLPPPSEAQLKAVSWRLAGLTALADWIGSDQSHFPYTAPDT 234 Query: 246 APSDINALRTYFQDRQQDASRVLELSGL-VSNKRCYEGVHALLDNGYQPRQLQVLVDA-- 302 LRTY++ A + GL + AL P Q Sbjct: 235 ------DLRTYWEAAIAQAEGAVAAFGLVPAAPGPRLSFSALTGVTCPPSAAQSWATEVA 288 Query: 303 LPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASAS 362 LP P L ++E TG GKTE AL A +L+ A + ALPT ATANAM +R+ A Sbjct: 289 LPDGPLLIIVEDVTGGGKTEAALMLAHRLLADGRARGLFLALPTMATANAMFSRVREIAP 348 Query: 363 HLFSS---PNLILAHGNSRFNHLFQSIKSRAI-------TEQGQEEAWVQCCQWLSQSNK 412 LF P+L LAHG + + F+S+ A +G++++ WL ++ Sbjct: 349 RLFGEGAKPSLTLAHGAATLHPAFRSVPVPAAPGAAPAGEREGEQDSAAVAAGWLMGESR 408 Query: 413 KVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQ 472 + L +GV TIDQVL+SVLP +++ +R G+ VL+VDE H+YD Y+ LE ++ Sbjct: 409 RALLADLGVGTIDQVLLSVLPARYQAVRLAGLADKVLLVDEAHSYDAYVGTELERLVAFH 468 Query: 473 ADVGGSVILLSATLPMKQKQKLLDTYGLHT---DPVENNSAYPLINWRGVNGAQRFDLLA 529 A GGS I+LSATLP K +L+ + + YP+ G+ L Sbjct: 469 AAGGGSTIILSATLPRTVKDRLVAAWRGAVGDGGAPLKQAHYPVATLVARAGSPVEKRLH 528 Query: 530 HPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKE 589 +L ++ P + LER+ AA AGA V + N VD A L++ Sbjct: 529 ARPELRRNLTVTRVPNPS-------SALERIRAAVAAGACVAYVRNTVDDAIETAAVLRQ 581 Query: 590 LNNTQVDIDLFHARFTLNDRREKENRVISNFGKNG--KRNVGRILVATQVVEQSLDVDFD 647 + DLFHARF ++DR E RV++ FGK+ + GR+LVATQV+EQSLD+DFD Sbjct: 582 ---AGIPADLFHARFAMHDRLAIEERVLATFGKSSQPEDRRGRVLVATQVLEQSLDLDFD 638 Query: 648 WLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEG----------YGRHE 697 +++ P D L QR GRL RH RP P I+ PD G R Sbjct: 639 LIVSDLAPIDALLQRAGRLWRHA--GRPRSVSGPELVIVSPDPAGSVSADWVGAALRRTA 696 Query: 698 HIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDK-FESA 756 +Y++ ++WRT + + A+ P R ++++Y + + D PE + D+ A Sbjct: 697 FVYTDPAILWRTARTL--FASATFNVPRDVRSAIEAVYAENKGDVPEVLLAASDEQHGRA 754 Query: 757 ECEKRFKARKVLQWAEEYSLQDN--DETILAVTRDGEMSLPLLPYVQTSSGKQL----LD 810 E+ F + +L + Y + VTR E + L + D Sbjct: 755 GAERAFADQNLLDHRDGYRADGKAWQQERQVVTRLAEAARVLRLARRDGERLVPWAQDPD 814 Query: 811 GQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVV------DEDGLLWLEGKQNLDGWVW 864 LS + YE + R W+ V DED +L +Q + W Sbjct: 815 PSTAWSLSEVKAYERVLRGRHQAEVRWRSLVDAVRVGWSRFDEDVILLPLERQQGEAWAG 874 Query: 865 -----QGNSIVITYTGDEGMT 880 +G ++ TY+ EG+ Sbjct: 875 VLVDDEGQAVNFTYSVAEGLR 895 >UniRef50_B5ZCG0 CRISPR-associated helicase Cas3 n=2 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=B5ZCG0_GLUDA Length = 897 Score = 537 bits (1382), Expect = e-151, Method: Composition-based stats. Identities = 266/941 (28%), Positives = 399/941 (42%), Gaps = 117/941 (12%) Query: 10 YWGKSSKSLTKGND----IHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKA 65 +WGK+ +G +H LI H LDVAAVA +N C + + Sbjct: 9 FWGKARAVPAEGAMIGPVMHPLIAHMLDVAAVAVLL------PENAKCGLD-------RR 55 Query: 66 WLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQD 125 L +ALHDIGK FQ K W + L G ++ F H AAGL Sbjct: 56 QLGLLVALHDIGKLMPAFQAKVEICWPE-----AILGGFPVELVPCF-HDAAGL------ 103 Query: 126 SLSEQSLGDFFSFFDAAPHPYESW-----FPWVEAVTGHHGFILHSQDQDKSRWEMPASL 180 +L + + D + A + W + AV GHHG + +QD++ Sbjct: 104 ALLDLMVDDVLAALFANGQDGKCWRLTHKLKLLRAVAGHHGQPVSAQDRN---------- 153 Query: 181 ASYAAQDKQAREEWISVLEALFLTPAGL-SINDIPPDCSSLLAGFCSLADWLGSWTTTNT 239 + A + +++L +F P L +D +LA ADW+GS Sbjct: 154 -TLAPDTIERARTLVALLFDVFRPPPILRPGDDTLRRLEWMLARVTIQADWIGSQQEWFP 212 Query: 240 FLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVL 299 ++ E + R Q A L +V + G L D+ +P +Q L Sbjct: 213 YVTPESVADPSGYFWNHALPRAQSAIHRAGLGPMVGAP--FAGTAGLFDHIREPSPMQAL 270 Query: 300 VDALPV--APGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRM 357 ++ LPV P L VIE TGSGKTE AL A +LI + + ALPT ATANAM R+ Sbjct: 271 LETLPVPSGPVLVVIEDATGSGKTEAALVMAQRLIAAGRSSGLFVALPTMATANAMYDRL 330 Query: 358 EASASHLF---SSPNLILAHGNSRFNHLFQSIKSRAITEQG-------QEEAWVQCCQWL 407 A+ LF + P+L LAHG +R + F + + E A C WL Sbjct: 331 AAAYRRLFQPSARPSLALAHGRARLDERFAAALAPDDGSDAFPDARIMDETAEAYCAAWL 390 Query: 408 SQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEA 467 +++ + Q+GV TIDQ L++VLPV+ +R G+ +LIVDE HA+D YM + A Sbjct: 391 GSESRRALMAQVGVGTIDQALMAVLPVRFATVRHAGLAGKILIVDECHAFDPYMRREMVA 450 Query: 468 VLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVEN----NSAYPLINWRGVNGAQ 523 +L+ A +GGS +LLSATL + +Q+L + + D V+ +AYPL+ G GA+ Sbjct: 451 LLRFHAAMGGSALLLSATLTQRIRQELTNAFRSGLDTVDPAPLSGTAYPLVTLVGKAGAE 510 Query: 524 RFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVC 583 + P I + + +IAAA AGA V I N VD Sbjct: 511 EYPCALRPG--------LARSIAVRRLADTDAASREVIAAAAAGAAVAWIRNTVDEVIAT 562 Query: 584 YQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGR-ILVATQVVEQSL 642 + L+ V++ +FHARF + DR E V++ FGKN + +LVA+QV+EQSL Sbjct: 563 ARFLRAQG---VELLVFHARFAMVDRLAIERDVLARFGKNKETTGRSAVLVASQVIEQSL 619 Query: 643 DVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVAT----ILLPDGEGYGR--- 695 D+DFD L+T P D + QR GRL RH R RP E + + PD R Sbjct: 620 DLDFDVLVTDLAPMDQVIQRAGRLRRHDRIARPVDREELLVISPEPVAEPDPSWVRRVLP 679 Query: 696 -HEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYD-DAEMDEPEWVGNGM-DK 752 +Y + ++WRT + + + P R ++ D DA P+ + G D Sbjct: 680 GTAAVYRDPALLWRTARTL--FRYGRIESPGRIRALIEEAGDADAPGAVPDGLAAGSTDA 737 Query: 753 FESAECEKRFKARKVLQWAEEYSLQDN--DETILAVTRDGEMSLPLLPYVQTSSGKQL-- 808 A R VL + Y + TR ++ + G+ L Sbjct: 738 MGKALAAGFAADRNVLSFDAGYVADGALWEREARTPTRLEDLPYVTVRLAVMQDGRVLPW 797 Query: 809 ---LDGQV--YEDLSHEQQYEALALNRVNV-----PFTWKRSFSEVV---------DEDG 849 +D + + +++ + + P +R + DE Sbjct: 798 AAKIDPGLACAGEHRRAWALSEVSVAQYRLARCPPPPGLERVVAAARAEWPRWEREDESS 857 Query: 850 LLWLEGKQNLDGWVW-----QGNSIVITYTGDEGMTRVIPA 885 +L L ++ +GW G+ +VI Y G+ V+PA Sbjct: 858 VLLLILQKMEEGWRGAGQIETGHEVVIGYDRTYGL-EVVPA 897 >UniRef50_C0VRV9 CRISPR-associated helicase Cas3 family protein protein n=1 Tax=Corynebacterium glucuronolyticum ATCC 51867 RepID=C0VRV9_9CORY Length = 945 Score = 533 bits (1374), Expect = e-150, Method: Composition-based stats. Identities = 234/958 (24%), Positives = 365/958 (38%), Gaps = 119/958 (12%) Query: 7 ICHYWGKSSKSLTK-GNDIHLLIYHCLDVAAVADCWWDQSVVLQNT--FCRNEMLSKQRV 63 I +W K+ + T D + H +D A VAD W+ + Q R +++Q + Sbjct: 23 IRSFWAKTPEDSTDKSGDFLSVPQHLVDAACVADELWETWLSNQTRAFLRRETSMTEQAL 82 Query: 64 KAWLLFFIALHDIGKFDIRFQYKSAESW------LKLNPATPSLNGPSTQMCRKFNHGAA 117 ++ + F + HDIGK FQ + ++ A SL P T+ + Sbjct: 83 RSLVTFVVGTHDIGKISCTFQSQLDSRGDMGMYSQRVEDAGFSLVAPKTE---------S 133 Query: 118 GLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMP 177 ++ S SE L D+ P + A HHG K+ M Sbjct: 134 AFEYYPHSSASEAILFDWL-LNHKVSRPVGLSIASIAA--AHHGVPSTKPGVAKAARAM- 189 Query: 178 ASLASYAAQDKQAREEWISVLEAL--FLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWT 235 A Y+A K A +E + + L F + + ++ GF + DW+ S Sbjct: 190 ---AKYSAGWKAAHKEILDKIAELTGFNEVLQQITKPLTTPATQIITGFVIMCDWIASNQ 246 Query: 236 TTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKR------CYEGVHALLDN 289 +DR + +ELS S + Y + Sbjct: 247 MAFPLNDTHSQ-----------EDRVRRGVDSIELSSPWSPQVRAPQDATYFSSAFNWPD 295 Query: 290 GYQPRQLQVL---VDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPT 346 Y+ R +Q + P L +IEA TG GKTE LA A L + ++FA PT Sbjct: 296 SYKIRPIQQAAVDIARAQKEPTLLIIEAATGEGKTEAGLAAAHVLAAHAGSQGIVFAAPT 355 Query: 347 QATANAMLTRMEASASHLFSSPNLI---LAHGNSRFNHLFQSIKSRAITEQGQEEAWVQC 403 +TA+ + R+ A + L H S N F ++ +I ++ E V Sbjct: 356 MSTADGLFNRVTDWAMRTTPESEVSTMFLGHSKSSLNRDFTKLRFGSIGDR-HEFGTVTA 414 Query: 404 CQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNG 463 +WL+ K+ L VCT+DQVL+ L +H +R LG V+I+DE H+YD YMN Sbjct: 415 TRWLA-GRKRGILSNFVVCTVDQVLMLALQARHLMLRHLGFSGKVVIIDEAHSYDVYMNE 473 Query: 464 LLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLH---TDPVENNSAYPLINWRGVN 520 L ++ A G SVI++SATLP Q+Q L Y +SAYPL+ Sbjct: 474 YLAVAIQWLARYGCSVIIMSATLPTSQRQALASAYAKGLNVEKATVRSSAYPLLTIVDKQ 533 Query: 521 GAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIA-AANAGAQVCLICNLVDV 579 G + + PE + + + D + ++ G ++CN V Sbjct: 534 GGREQPVETRPES---------KHYSVEKLADDGEAVAGLLEDKLREGGVALVVCNTVRR 584 Query: 580 AQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGR----ILVAT 635 AQ + +L +V+ L HA F + R KE + G + R GR ++VAT Sbjct: 585 AQEAFDKLSARFPGEVE--LHHAAFMASHRARKEEELRRKLGPHAHRGNGRPDRLVVVAT 642 Query: 636 QVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKY--RPAGFEIPVATI-----LLP 688 QV EQSLD+D D L+T P DLL QR+GR++RH+R RP I P Sbjct: 643 QVAEQSLDIDADLLVTDIAPMDLLIQRIGRVYRHNRPASDRPEPVSNAQVYIRGVETWDP 702 Query: 689 DGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVG- 747 E +YS + T ++ L P + + Y A W Sbjct: 703 VPEFEAGTAAVYSPAILFATTAVAMQTLFARGFTSPSDVSELVQKTYSPAVTCPNGWEEQ 762 Query: 748 --NGMDKFESAECEKRFKA------------------RKVLQWAEEYSLQDNDETILAVT 787 + A R +A R + + S ++ + LA Sbjct: 763 WNEAAKQHAQAIDLSRARADSYRIPEPRSVANERSLQRLYERIGPKESAENEEAKGLAQV 822 Query: 788 RDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYE-----ALALNRVNVPFTWKR--- 839 RD ++ ++P V T G L D++ + Q E ALA + V +P R Sbjct: 823 RDSTPTVEVIPIVSTEYGYIPLALPDSPDIADDAQPERHTAFALAASSVRLPSRLTRYDT 882 Query: 840 SFSEVVDE---------DGLLWLEGKQNLDGWVWQGNSIV---ITYTGDEGMTRVIPA 885 + ++V+D+ L+G+ L + + Y D G+ V P Sbjct: 883 ALNKVLDQLEMDTPVGWVQDYQLKGEVALRLNAEHEIELNGHLLRYDMDLGLLEVFPG 940 >UniRef50_C7MTN1 CRISPR-associated helicase Cas3 n=1 Tax=Saccharomonospora viridis DSM 43017 RepID=C7MTN1_SACVD Length = 943 Score = 531 bits (1368), Expect = e-149, Method: Composition-based stats. Identities = 230/956 (24%), Positives = 357/956 (37%), Gaps = 106/956 (11%) Query: 5 KYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNE-MLSKQRV 63 +++ WGKS+ G +LL+ H LD AAVA+C WD+ + +E + Sbjct: 8 RWLEALWGKSASR--GGGRRNLLLAHMLDTAAVAECLWDRFLAPVTRRSVDEIAGGPGKG 65 Query: 64 KAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFN 123 + + + +HD GK FQ+ + + A + + + H AG Sbjct: 66 RPFFAWLCGVHDCGKAVPAFQFVDEDCARLVWDAGLQWDRHRV-ARQPWRHDKAGAALLR 124 Query: 124 QDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASY 183 + A P E V GHHG +D R ++ Sbjct: 125 R-------------CLPQAGWPVEQIDWVWPLVAGHHGTFP-GRDALYLRPAALRAVQGA 170 Query: 184 AAQDKQAREEWISVLEALFL--TPAGLSINDIPPDCSSL-LAGFCSLADWLGSWTTTNTF 240 +A+ +A+E + V T A ++ ++P L LAG +ADW+ S TT Sbjct: 171 SAEWLRAQEVLLRVFTEQLGYRTVAEVAPVEVPNRALQLQLAGLVVMADWIASNTTVFEG 230 Query: 241 LFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVL- 299 L +E A + I + R A R L L G + G R Q + Sbjct: 231 L-DELAKTGIEQ----SRRRADRAWRELGLRGGWGTRPVPGPEAFRDRFGQDMRPAQAMI 285 Query: 300 --VDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRM 357 V PGL V EAP G GKT+ AL A L + AD V +PTQAT + M + + Sbjct: 286 VDVARRMPDPGLMVFEAPMGEGKTKAALLAAEILAARFGADGVFVGMPTQATCDPMFSEV 345 Query: 358 EASASHLFS--SPNLILAHGNSRFNHLFQSIKSR---------------------AITEQ 394 + + L HG R N ++++ A E Sbjct: 346 RGWVAATEPGLEGQVALLHGKRRLNKQWRALLEATGEAPMDDYCVPEDDAQYGMVATEED 405 Query: 395 GQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEV 454 + +W +K+ L V TIDQ+L + KH +R G+ V+I+DEV Sbjct: 406 SGAPDRLVPAEWF-LGSKRGLLCPFVVGTIDQLLFAATRTKHVMLRMAGLIGKVVILDEV 464 Query: 455 HAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTY------GLHTDPVENN 508 HA D YM+ LE L+ V+LLSATLP +Q+++L++ Y +PV Sbjct: 465 HACDVYMSQFLEEGLRWLGQARVPVVLLSATLPPEQRERLINAYVSAHVQPSTPEPVHPP 524 Query: 509 SAYPLINWRGV--NGAQRFDLLAHPEQLPPRFSIQPEPICL-------ADMLPDLTMLER 559 YP + V +G R ++ H P ++ + A + + + Sbjct: 525 RGYPSVTAVSVGSDGNVREPIVEHTGSWRPDQHVRVSVVDETPHQGRTAADDAENAVADL 584 Query: 560 MIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISN 619 + G +I N VD AQ Y+ L + + L H R DR E+ + Sbjct: 585 IADRLREGGCALVIRNTVDRAQATYRMLARRFG-RDQVGLLHGRLHAGDRAERTEDNLGR 643 Query: 620 FGKNGKRNVGR----ILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRP 675 FG + + V ILVAT + EQS DVD D L+T P DLL QR+GRLHRH+ +RP Sbjct: 644 FGPDPAKRVPPGTRWILVATSLAEQSFDVDADLLVTDLAPIDLLLQRIGRLHRHNLAHRP 703 Query: 676 AGFEIPVATIL-----LPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQW 730 + P + R ++ R+ + E G P + Sbjct: 704 TPLKTPEVVVTGLCRRGAKPPWLVRQSIAIYGEYLLLRSAALVIEAEGGQWRVPSQVPEL 763 Query: 731 LDSIYDDAEMDEP------------------EWVGNGMDKFESAECEKRFKARKVLQWAE 772 + ++YD + P E + F A + Sbjct: 764 VAAVYDGKPLSVPRAWVEAEHAAYVDYQRRQEERIANAEPFRLARRGEEHSGTLEGLHVG 823 Query: 773 EYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQ---VYEDLSHEQQYEALALN 829 + ++ A+ RDG S+ ++ + G L G+ V D++ E E LA Sbjct: 824 AHREGLGEQQFQALVRDGAPSVEVVLVHEGDRGYSTLSGRRLGVNGDVAAELLDEILAA- 882 Query: 830 RVNVPFTWKRSFSE----VVDEDGLLWLEGKQN--LDGWVWQGNSIVITYTGDEGM 879 V +P + S E + G WL + L +TY G+ Sbjct: 883 TVRLPQSLTTSAEENLRPLPGWHGHPWLRHTKALVLHNGRSDVLGKTVTYDSTLGL 938 >UniRef50_Q47PJ0 CRISPR-associated helicase, Cas3 family n=1 Tax=Thermobifida fusca YX RepID=Q47PJ0_THEFY Length = 944 Score = 527 bits (1357), Expect = e-148, Method: Composition-based stats. Identities = 228/868 (26%), Positives = 338/868 (38%), Gaps = 96/868 (11%) Query: 8 CHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQ--SVVLQNTFCRNEMLSKQRVKA 65 +W K + L+ H LD AA A W++ S L++T + ++ Sbjct: 18 LRFWAKERGLR---GKTYPLVCHSLDAAAAALVLWNEYLSPGLRDTIASSMETDEEHAGH 74 Query: 66 WLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQD 125 + F+ LHDIGK FQ + A S + +H AA W Sbjct: 75 CIAFWAGLHDIGKLTREFQQQIAIDL--------SAYPGEELSGEQRSHAAATGKWLP-- 124 Query: 126 SLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAA 185 F P+ + + GHHG H +SR + S Sbjct: 125 ---------FALPSLGYPNGGLVTGLVAQMLGGHHGTF-HPHPSFQSRNPLAEFGFSSPH 174 Query: 186 QDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTN-TFLFNE 244 +KQ R + + P + D P +S++ G LADWL S L + Sbjct: 175 WEKQ-RHALLHAVFDATGRPTPPDMLDGPT--ASVVCGLVILADWLVSQEDFLLERLTSL 231 Query: 245 DAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDA-- 302 A +ALR +F+ + +L+ +GL + +P LQ + Sbjct: 232 PADGSASALRAHFETSLRRIPSLLDAAGLRPITVPPATFTESFPHLSKPNGLQASLAKHL 291 Query: 303 --LPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEAS 360 L PGL +I AP G GKTE A A L ALPT ATA+ M TR++ Sbjct: 292 PCLCTGPGLVLITAPMGEGKTEAAYHVADLLGKATGRPGRFLALPTMATADQMHTRLKEY 351 Query: 361 ASH------LFSSPNLILAHGNSRFNHLFQSIK----SRAITEQGQEEAWVQCCQWLSQS 410 A + L S L L H + N + S+ ++ G + + WL Sbjct: 352 ARYRVENTDLPRSSTLALLHSMAWLNPDYAPADLPGVSKVLSNLGHRDPFA-ATDWL-MG 409 Query: 411 NKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLK 470 K+ L V TIDQ L++VL KH +R G+ V++VDE HA D YM LLE +L+ Sbjct: 410 RKRGLLAPWAVGTIDQALMAVLRAKHNALRLFGLAGKVVVVDEAHAVDPYMQVLLEQLLR 469 Query: 471 AQADVGGSVILLSATLPMKQKQKLLDTY---------GLHTDPVENNSAYP-------LI 514 + V+LLSATL L+ Y + +YP I Sbjct: 470 WLGTLDVPVVLLSATLHHSIANSLVKAYLEGARGRRWNRSEPQPVSEVSYPGWLHVDARI 529 Query: 515 NWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLIC 574 + +A + P + P+ + + + + G +IC Sbjct: 530 GKVTRSSDVDPLPIATTPRKPLEVRLVDVPVKEGALNRSTVLAKELTPLVKQGGCAAIIC 589 Query: 575 NLVDVAQVCYQRLKE----LNNTQVDIDLFHARFTLNDRREKENRVISNFGKNG-----K 625 V AQ Y L + L D+ L H+RF R E ++ FGK G + Sbjct: 590 TTVAEAQGVYDLLSQWFATLGEDAPDLYLLHSRFPNRQRTEITATIVDLFGKEGAQSGRR 649 Query: 626 RNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRH---HRKYRPAGFEIPV 682 G +LVATQVVEQSLD+D D +I+ P LL QR GR RH RP + P Sbjct: 650 PTRGAVLVATQVVEQSLDLDVDLMISDLAPVSLLLQRAGRCWRHEHLGIINRPQWAKQPE 709 Query: 683 ATILLPDGEG-------YGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIY 735 +L P+ G + R + ++ RT + NGA + P+ +Q +D +Y Sbjct: 710 LVVLTPEQNGDADRAPWFPRSWTSVYPLALLQRTYTLLRRRNGAPVQIPEDVQQLVDDVY 769 Query: 736 DDAEMDEPEWVGNGMDKFESAECEKRFKARKV-----------LQWAEEYSLQDNDETIL 784 DD + E + M++ E +R AR L E+S D DE +L Sbjct: 770 DDDSL--AEDLEADMERMG-EELAQRGLARNAVIPDPDDAEDNLNGLTEFSF-DVDEHVL 825 Query: 785 AVTRDGEMSLPLLPYVQTSSGKQLLDGQ 812 A TR G S+ +L Y ++G + LD + Sbjct: 826 A-TRFGAGSVRVLCYYVDTAGNRWLDPE 852 >UniRef50_A8SDS1 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SDS1_9FIRM Length = 918 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 224/899 (24%), Positives = 355/899 (39%), Gaps = 101/899 (11%) Query: 12 GKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFI 71 GK+ T + L H D A + + Q + ++ + A F Sbjct: 27 GKTDPENT--SLWLPLWMHLWDTAGIMERLVRQWLPESAKRAMGFE-REEALLAHARFLG 83 Query: 72 ALHDIGKFDIRFQYKS----AESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSL 127 +HDIGK + FQ E+ +L TP L+ P Q R+ H AG Sbjct: 84 GIHDIGKATVAFQANILRTLPEARQRLEMLTP-LDCP-EQNRRESPHARAGEAIL----- 136 Query: 128 SEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFI--LHSQDQDKSRWEMPASLASYAA 185 ++ P V HHG + D WE Sbjct: 137 ----------LWNDCP------GGLASIVGAHHGRPQSCAAVDDQLECWESNYYPKGQKK 180 Query: 186 QDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNED 245 + E + + + D+ P LL G +ADW+ S T + E+ Sbjct: 181 VWESFWTELLMTVLQDCGFDDTAELYDLDPQEEVLLTGLLIMADWIASNTEYFPLIPVEE 240 Query: 246 APSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDN----GYQPRQLQVLVD 301 S +D R E L G+ + G+ P +Q V Sbjct: 241 LGS--------MEDYPARVDRAWEKLALPFPWEAQPGIADPQEFAVRFGFAPNAVQRAVL 292 Query: 302 AL---PVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRME 358 PG+ ++EA G GKTE ALA A + + V F LPTQATAN + R+ Sbjct: 293 EAVDTAAEPGILILEAQMGVGKTEAALAAAEIMASRFGLGGVFFGLPTQATANGIFPRLL 352 Query: 359 ASASHLFSS---PNLILAHGNSRFNHLFQSIKSRAI--TEQGQEEAWVQCCQWLSQSNKK 413 A + LAHG + N + ++ R + E QEE VQ QW + NK+ Sbjct: 353 GWADTQTEETLPQAIKLAHGMAELNENYLRLQGRGVQLEEDAQEEHRVQVHQWF-RGNKQ 411 Query: 414 VFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQA 473 V L + T+DQ+L++ L KH +R LG+ V+I+DE HAYDTYMN L+ L+ Sbjct: 412 VLLANFVIGTVDQLLLAALAQKHVMLRHLGLAGKVVIIDECHAYDTYMNCYLDRTLEWLG 471 Query: 474 DVGGSVILLSATLPMKQKQKLLDTY----GLHTDPVENNSAYPLINWRGVNGAQRFDLLA 529 VILLSATLP +++ +L++ Y P E + YPL+ W ++ + + Sbjct: 472 WYKVPVILLSATLPARRRTELVEAYQQKKAAPDAPWETSCGYPLLIWTNGAEVKQTAIPS 531 Query: 530 HPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKE 589 + + EP + + G +I N V AQ Q L+E Sbjct: 532 DAPGQTVQLTTLTEP----------ELPALLRRKLAEGGCAGVIVNTVKKAQKIAQLLRE 581 Query: 590 LNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVG--RILVATQVVEQSLDVDFD 647 + ++ LFHA+F + DR +EN++++ GK I+V TQV+EQSLD+D D Sbjct: 582 SLPDK-EVQLFHAQFLMPDRAARENQLMARIGKGSAPECRNDLIVVGTQVMEQSLDIDLD 640 Query: 648 WLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMW 707 L+T+ CP DLL QR+GRLHRHHR RPA + +L + + ++W Sbjct: 641 VLVTELCPMDLLLQRIGRLHRHHRS-RPAPLQQACCAVLDTGEDAFDAGSEAVYGQWLLW 699 Query: 708 RTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKV 767 RT++ + S+ P+ + +Y E + P + +++ KAR Sbjct: 700 RTRKFLPR----SIRLPEEISPLVQRVYG-WEREAPGGAQGEEMRSIYERTQEKMKARAE 754 Query: 768 LQWAEEY---------SLQD--------NDETILAVTRDGEMSLPLLPYVQTSSG----- 805 + +L D +D A RDG+ S+ +L + + G Sbjct: 755 AYLVPQPETHRLAQLNTLDDWMQNEGARSDPAARAAVRDGDPSVEVLVMQRRADGSIHFL 814 Query: 806 --KQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGW 862 ++ + + +A ++ +P + +++ V L + + L W Sbjct: 815 PWQEGGSAVAVDSPPPPETALKIARQKLRLPAVFGKAWK-VDGVIRELEADNRSRLAAW 872 >UniRef50_Q2RY15 CRISPR-associated helicase, Cas3 family n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RY15_RHORT Length = 920 Score = 524 bits (1349), Expect = e-147, Method: Composition-based stats. Identities = 268/863 (31%), Positives = 380/863 (44%), Gaps = 75/863 (8%) Query: 1 MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSK 60 M ++I YWGK+ + G H L YH LDVAA D L N R LS Sbjct: 28 MTLPRWILGYWGKARPARADGPAWHPLAYHGLDVAAAMAALLDLRPALLNAIARAAGLSP 87 Query: 61 QRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLY 120 Q + L+ A HD+GKF FQ K + PA P + G S + HG GL Sbjct: 88 QDARRALILLAAFHDLGKFAENFQQKVEIPGII--PAAPGVIGSSQRG-----HGGVGLR 140 Query: 121 WFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASL 180 + + + + W++A GHHG + S+ + PA Sbjct: 141 LWETAVQAGPAPLSVIA---------ARLGQWIDAAFGHHGAPVESKGFHLAEALSPA-- 189 Query: 181 ASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTF 240 AR++ ++ + + D +AG LADW+GS T + Sbjct: 190 ---------ARDDALAFVNDCLGFLPMPEASVDGADEIWQVAGLLILADWIGSNQTWFPY 240 Query: 241 LFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYE-GVHALLDNGYQPRQLQ-- 297 + +L Y+Q Q +A L + L + L+ +P LQ Sbjct: 241 APPDS------SLEAYWQKAQGNAKDALAKAALREAPIAPGLDLSDLIGPQARPSPLQRF 294 Query: 298 VLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRM 357 +A P P L +IE TGSGKTE AL A +L+ A+ + +ALP++ATANA+ R+ Sbjct: 295 AAAEAPPREPTLYIIEDLTGSGKTEAALLLAHRLMAAGQAEGLYWALPSKATANALYARL 354 Query: 358 EASASHLFS-----SPNLILAHGNSRFNHLFQSIKSRAITEQGQ------EEAWVQCCQW 406 A LF SP ++LAHG+ N LF + G+ + A QC + Sbjct: 355 AAVYRRLFQPDTDISPWIVLAHGDRDLNPLFADSRRPGGEYYGETRLADEQSAEAQCAAF 414 Query: 407 LSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLE 466 L+ KK FLGQIG+ TIDQ L+SVLPV+H+ +R + R VL+VDE HAYD Y+ L Sbjct: 415 LADDMKKTFLGQIGIGTIDQALLSVLPVRHQSLRICALSRRVLVVDEAHAYDDYVQAELA 474 Query: 467 AVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFD 526 +L+ + +GGS I+LSATL Q++ L Y N+ + R Sbjct: 475 RLLEFHSALGGSAIVLSATLTKSQRRDLCRRYQRTRGGDLPNAGAVKLTEDAFPLVTRVS 534 Query: 527 LLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQR 586 + E + LE +I AA+AG I N V A QR Sbjct: 535 AQSLVETPQDAARGTRRDLPFRLFSTVDQALESLIDAASAGLCGVYIRNTVTDAIAAVQR 594 Query: 587 LKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGK--RNVGRILVATQVVEQSLDV 644 L+ L VD+ LFHARF L DR EN + FGKN GRILVATQVVEQSLDV Sbjct: 595 LRALAPPGVDVALFHARFALGDRLAHENNALGRFGKNSTPDDRRGRILVATQVVEQSLDV 654 Query: 645 DFDWLITQHCPADLLFQRLGRLHRH-HRKYRPAGFEIPVATILLPDGEG----------Y 693 DFD ++T CP DLL QR GRLHRH R RP PV +++ P EG + Sbjct: 655 DFDVMVTDLCPMDLLIQRAGRLHRHADRPSRPP----PVLSVVAPPTEGAITAQWYAALF 710 Query: 694 GRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKF 753 + + +Y +V +WRT ++E G L + R +++++ D+ P + K Sbjct: 711 PQGQFVYRDVGQLWRTLSVLKERGGLPL-LSASPRLLIEAVFGDSAAPLPPTLEQPSFKA 769 Query: 754 E-SAECEKRFKARKVLQWAEEYSLQDN--DETILAVTRDGEMSLPLLPYVQTSSGKQLLD 810 E + E+ L+ + YS Q + A TR G+ + L + Sbjct: 770 EGKRQAERAVGYVVSLERSAGYSQQVDAWKTETQATTRLGDQGIRLRLA-------RWQK 822 Query: 811 GQVYEDLSHEQQYEALALNRVNV 833 GQ+ + A L+ V+V Sbjct: 823 GQLRPWFDDPDPWRAWRLSEVSV 845 >UniRef50_C0W6U4 CRISPR-associated helicase n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W6U4_9ACTO Length = 981 Score = 523 bits (1348), Expect = e-147, Method: Composition-based stats. Identities = 240/1002 (23%), Positives = 358/1002 (35%), Gaps = 140/1002 (13%) Query: 1 MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQS--VVLQNTFCRNEML 58 M W KS + + L H LD AAV+ + + R Sbjct: 1 MNLSSTAAAAWAKSGYNPERE-RWLPLPIHLLDTAAVSRHLAKNWLSPSICSIIDREFAT 59 Query: 59 SK------QRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKF 112 S + A + +HDIGK F K E + ++ + RK Sbjct: 60 SPSGLSPSEEFTALAAWISGVHDIGKASPAFASKVPELYDRMCESGFERVPVDPLERRKV 119 Query: 113 NHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKS 172 HG AG F +Q L + +ES V HHG +S Sbjct: 120 PHGLAGHRIF------QQWLENVHG------WSFESAEALACIVGAHHGIPPTYASLQES 167 Query: 173 RWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLG 232 P + E ++ + A S +L+G +ADWL Sbjct: 168 EGREPLIGTGTWTTVQNELLELVTEHCEVSSLLAHWSKRTWSQPFLVILSGLVIVADWLA 227 Query: 233 SWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGV------HAL 286 S + +D D+ A + Q Q +R +EL + GV Sbjct: 228 STEDYFPLVSADDDGRDLLAPDRHRQRVTQGLAR-IELPAPWRPRDEEAGVSDTLRHRFS 286 Query: 287 LDNGYQPRQLQVLVDALPVA---PGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFA 343 L G ++Q + PG+ +IE TG GKTE AL A L + V+FA Sbjct: 287 LPEGSTATEVQTRAVEMARTMPMPGMLIIEDSTGGGKTEAALMAAEVLAARSGRAGVLFA 346 Query: 344 LPTQATANAMLTRMEASASHL------FSSPN---LILAHGNSRFNHLFQSIKSRAITEQ 394 LPTQAT +AM R + L +P+ + L HG +R N ++ R + Sbjct: 347 LPTQATTDAMFARELSWLESLEEAYASDGAPSTFAVQLIHGRARLNKQAGQLRRRGYELR 406 Query: 395 GQ------------------------------------EEAWVQCCQWLSQSNKKVFLGQ 418 Q A + W + KK L Sbjct: 407 SQLLGSLGGDDSTLPHPCQIGWDEIEARAGRELDSSHGRRADIAIGAWFN-GRKKAMLAD 465 Query: 419 IGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGS 478 V T+D +L + H +R LG+ R V+IVDEVH+Y T+MN L+ L A G Sbjct: 466 FVVTTVDHLLFGAMRSPHLALRHLGLSRKVVIVDEVHSYSTHMNVYLDRALTWLAAYGVP 525 Query: 479 VILLSATLPMKQKQKLLDTY--GLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPP 536 VILLSATL + +L Y GL + +P + ++ Sbjct: 526 VILLSATLSQARCAELTSAYRHGLALADGQRVPRHPSPDPLSTPFPCLVSTGLAGSRVVG 585 Query: 537 RFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVD 596 S D L ++ + A + G ++ N V AQ Y+ L+ +V Sbjct: 586 SSSAGRTARVHVDRLGRDQLVPTLRMALSDGGCALVVRNTVRRAQETYELLRSELGEEVS 645 Query: 597 IDLFHARFTLNDRREKENRVISNFGK---NGKRNVGRILVATQVVEQSLDVDFDWLITQH 653 + HARFT+ DR K++ ++ FG R ++VATQVVEQSLDVDFD LIT Sbjct: 646 V--HHARFTVGDRLAKDDELLKKFGPPRSGPDRPHRAVVVATQVVEQSLDVDFDLLITDL 703 Query: 654 CPADLLFQRLGRLHRHHRKYRPAGFEIPVATI-LLPDGEG-----YGRHEHIYSNVRVMW 707 P DL+ QR+GRLHRH R RPA + LP G + IY ++ ++ Sbjct: 704 APIDLILQRMGRLHRHERP-RPASLTEATCLVDWLPTPTSESPSLEGGAQAIYGSLDLL- 761 Query: 708 RTQQHIEEL--NGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFK-- 763 R+ + ++ + P ++ +Y + P W + A+ KR K Sbjct: 762 RSAAVLHKVMEGPGEVRIPQDVHALIEGVYGELVSTPPAWDKALAEAASKADELKRAKTD 821 Query: 764 ---------------ARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSG--- 805 A ++ W +L DNDE A RDGE SL ++ G Sbjct: 822 AARTFLLSSPPRASCASSLIGWLHSAAL-DNDEKGRAQVRDGEDSLEVILIDARRQGGQV 880 Query: 806 --KQLLDGQVY------EDLSHEQQYEALALNRVNVPFTWKRSFSEVVDE-----DGLLW 852 L +D + A+A++ V +P S V+D + L Sbjct: 881 GLYTLPTAGAPALPIPDDDAPEPKVARAMAMSAVRLPPRL--SNPRVIDTVISELETRLV 938 Query: 853 LEGK----------QNLDGWVWQGNSIVITYTGDEGMTRVIP 884 + L+ I + Y+ G+ V P Sbjct: 939 PAWQSIPELAGQLVLPLEHGRATLAGITLEYSSSTGLKEVSP 980 >UniRef50_Q03C64 CRISPR-associated helicase n=3 Tax=cellular organisms RepID=Q03C64_LACC3 Length = 922 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 210/907 (23%), Positives = 350/907 (38%), Gaps = 82/907 (9%) Query: 3 PFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQR 62 + W K +++ L+ H +D + V+ ++Q + Q + Sbjct: 2 LSERAKSLWAK-KRTVDGQPKWLPLVAHLVDASNVSRMLFNQWLSDQQRVFLTVDQDVDK 60 Query: 63 VKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWF 122 + F +HDIGK FQ K + + A T G + Sbjct: 61 TLKLVKFVGFIHDIGKATPAFQTKKSYVEDAILDADLIEKAVRTGFV-----GLDSTHLP 115 Query: 123 NQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFIL-HSQDQDKSRWEMPASLA 181 + G+ A P V GHHG L + +D + A Sbjct: 116 SASKSPHAKAGEAILERLAGPDSIG------AIVGGHHGRPLTRAPQRDIGDYTSNYWQA 169 Query: 182 SYAAQDKQAREEWISVLEALFLTPAGL----SINDIPPDCSSLLAGFCSLADWLGSWTTT 237 +Q ++ L L +G + I + LL G +ADWL S Sbjct: 170 EKDPVVQQRWQDVQLELLNYGLEISGFKSVAELPMISQPQAVLLEGLLIMADWLSSSEAL 229 Query: 238 NTFLFNEDAPS---DINALRTYFQDRQQDASRVL-ELSGLVSNKRCYEGVHALLDNGYQP 293 P D R Q A + L G+ Sbjct: 230 EDDPGQPLFPLISLDQGLDDLNLTARYQQAWTRWQRTDEWPTAPVPLASDPYKLRWGFSA 289 Query: 294 RQLQVLVDAL---PVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATA 350 R +Q V + PG+ +IEAP G GKTE AL A +L + + F LPTQATA Sbjct: 290 RPVQRKVAEMIDQAEDPGMVIIEAPMGMGKTEAALVAAEQLAYKGKETGLFFGLPTQATA 349 Query: 351 NAMLTRMEASASHL----FSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQW 406 NAM R++ L + ++ L H + FN + + + E +A V +W Sbjct: 350 NAMFDRVDEWLRRLAADNGETYSIKLMHSKAEFNPNYLKV---PVAEDVDGDASVVVNRW 406 Query: 407 LSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLE 466 S KK L + + TID +L L KH ++ LG+ + V+I+DEVHAYD++M+ L Sbjct: 407 FS--GKKSILDEFSIGTIDNLLQMDLKQKHLALKHLGLSKKVVIIDEVHAYDSFMDQHLF 464 Query: 467 AVLKAQADVGGSVILLSATLPMKQKQKLLDTY---------------GLHTDPVENNSAY 511 L+ +++LSATLP + +LL+ Y + +++ AY Sbjct: 465 RTLEWLGTYHVPIVVLSATLPKATRNRLLEAYFHGKFGQKLSKGADLSRVSSDWQDSEAY 524 Query: 512 PLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVC 571 PL++ +R + ++H + + + ++ L L ER++ A G Sbjct: 525 PLVSMLD---GRRLNQVSHFDGKTNQSQLSIHVERMSGDLTALG--ERVLDAIADGGVAG 579 Query: 572 LICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRI 631 +I N + AQ L +V + H+ F R + E + + GK KR + Sbjct: 580 VIVNTIKRAQALADALA----GKVPFIVLHSAFVAAQRAQLETELQNAIGKGSKRPAKLV 635 Query: 632 LVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGE 691 ++ TQV+EQSLD+DFD L T P DLL QR GRLHRH RP P + +G Sbjct: 636 VIGTQVLEQSLDIDFDILFTDIAPMDLLLQRAGRLHRHA-IARPRALTGPRLVVTGIEGL 694 Query: 692 G-YGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGM 750 G + ++ +T+ + A+L PD + + + YD + Sbjct: 695 GEFEEGSAAIYGQYLLMKTEALLP----ATLRLPDDISRLVQTTYDLQRDPPLPGIEEER 750 Query: 751 DKFESAECEK-------------RFKARKVLQWA--EEYSLQDNDETILAVTRDGEMSLP 795 +FE+ +K R ++R + W ++ + +++ A RD + SL Sbjct: 751 TRFETKIAQKAQKAQAFQIAPPSRRRSRTLHGWLDNDQPGVDVSEQRAEAAVRDIDESLE 810 Query: 796 LLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWK----RSFSEVVDEDGLL 851 ++ T G L+DG+V + ++ + +A + +P + + + E L Sbjct: 811 VILLQHTKHGDALIDGRVVDSFQLDRMAKVIAQQTIRLPRVFTFNIDATIKALEQETARL 870 Query: 852 WLEGKQN 858 + +QN Sbjct: 871 YPGWQQN 877 >UniRef50_B1VIY4 CRISPR-associated protein n=4 Tax=Corynebacterium RepID=B1VIY4_CORU7 Length = 941 Score = 521 bits (1342), Expect = e-146, Method: Composition-based stats. Identities = 223/885 (25%), Positives = 344/885 (38%), Gaps = 93/885 (10%) Query: 7 ICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVV--LQNTFCRNEMLSKQRVK 64 + W KS + + L H DVAA A +D V +N + ++ Sbjct: 35 LAALWAKSGE----EGEYLNLPQHLADVAATAGEVFDIWVADATKNDLSGELGIDVGELR 90 Query: 65 AWLLFFIALHDIGKFDIRFQYKSA--ESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWF 122 + + LHD GK + FQ + L A P R+ A L Sbjct: 91 RLVTWLAGLHDSGKASVNFQRLLEKKPGYDYLLNAVSDAGLPLDTGYRE-----ADLPAM 145 Query: 123 NQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLAS 182 S LG++ + V HHG +K R ++ +L Sbjct: 146 PHSVASAAMLGEWLESETSVSSIMRR--RLRSIVGAHHGIPAD----EKLRRDIEDALKD 199 Query: 183 YAAQDKQAREEWISVLEALFLTPAGLSINDIP-PDCSSLLAGFCSLADWLGSWTTTNTFL 241 Y + +E + L LS P LL G ADW+ S Sbjct: 200 YPQAWRAVHKELLDGFAELTEIKPVLSKMSTPRAPELQLLTGIVVFADWIASNVDAFPLA 259 Query: 242 FNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQ---V 298 + + + D + + + + + + R +Q V Sbjct: 260 LQPMPQRLESGM------AKTDITLPWKPTEPAEDVDEFFRRSFSWPEEFCARSVQRTMV 313 Query: 299 LVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRME 358 P L ++EA TG GKTE ALA A +L + V FA PT ATAN +L R Sbjct: 314 EAARATEGPALYILEAETGVGKTEAALAAAHQLGAEDGVQGVYFAAPTMATANGLLDRTI 373 Query: 359 ASASHLFSS--PNLILAHGNSRFNHLFQSIKSRAITEQ--GQEEAWVQCCQWLSQSNKKV 414 A +L LAH ++ ++++K + I E G V QW+S ++ Sbjct: 374 NWAQGTTGDTVASLYLAHSKNQLAEPYRALKYKGIAEDEAGGAAGKVVASQWMS-GRRRG 432 Query: 415 FLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQAD 474 L I V T+DQVL+ L ++ +R L + V+I DEVH+YD Y + L+ L A Sbjct: 433 LLSNIVVGTVDQVLMLALVQRYSMLRHLALAGKVIIFDEVHSYDAYTSDYLKTTLSWLAY 492 Query: 475 VGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQL 534 G SVI+++ATLP +Q+++L + Y VE +SAYP I + ++ P L Sbjct: 493 YGASVIVMTATLPTRQREELAEAYSGEPLRVE-SSAYPRITVVTEEKDEVWEPEPSPRNL 551 Query: 535 PPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQ 594 + + D L +L L + A G +ICN + AQ YQ L E + Sbjct: 552 DASLQV------IGDELVELRALLDQLLA--EGGCALVICNTIARAQQAYQELAEAYPDE 603 Query: 595 VDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGR----ILVATQVVEQSLDVDFDWLI 650 V+ L HA F +R ++E+R+ G +R GR I+VATQV EQSLD+D D LI Sbjct: 604 VE--LHHAGFMAWERSQREDRLREELGPAARRGAGRPARKIVVATQVAEQSLDIDADVLI 661 Query: 651 TQHCPADLLFQRLGRLHRHHRKY--RPAGFEIPVATILLPDGEG----YGRHEHIYSNVR 704 T P DL+ QR+GR+HRH R RPA P I + + + Sbjct: 662 TDLAPMDLVIQRIGRIHRHQRPTSDRPAALREPQVFIRGVVDRDGVPEIDKGAQAIYDPK 721 Query: 705 VMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKA 764 ++ T H+ E PD ++++Y + EW + + AE E R + Sbjct: 722 ILLATLLHLPER----FRRPDDTAPLVEAVYGNIHAIPQEW----AELWAEAERESRSRE 773 Query: 765 RKVLQWAEEYSLQD----------------------NDETILAVTRDGEMSLPLLPYVQT 802 + + Y + ++E A RD E ++ ++P + T Sbjct: 774 ARAHARSATYRVPAASDAKEFESLFRGLNAAAQSLGDEERGAAQVRDSEPTVEVIPVMIT 833 Query: 803 SSGKQLLDGQ--------VYEDLSHEQQYEALALNRVNVPFTWKR 839 G + L + + QQ LA++ V +P R Sbjct: 834 DYGYRPLTPRSAEHSVEILSGVTPEFQQAWDLAMSTVRLPTRMTR 878 >UniRef50_A7BA68 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BA68_9ACTO Length = 961 Score = 520 bits (1340), Expect = e-146, Method: Composition-based stats. Identities = 194/795 (24%), Positives = 312/795 (39%), Gaps = 73/795 (9%) Query: 8 CHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAW- 66 +W KS ++ H +D A VA +D + + + R KA Sbjct: 3 RSFWAKSG----DSGSWLSVVQHLMDAADVAGLLFDDYLSEHHRRLMASVWGGDRAKARA 58 Query: 67 -LLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKF-NHGAAGLYWFNQ 124 +F +HD GK +F + + + + + R F HG + + Sbjct: 59 SFVFLAGVHDAGKVSPQFACQRQDLAQLIRSEGLVVMRKADYAERSFLPHGLVSQFALQE 118 Query: 125 DSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHS-----QDQDKSRWEMPAS 179 + A W V HHG + Q E Sbjct: 119 EIA-------------AGGGDGSRALQWAILVGVHHGRYPDAGAVYVARQQYKTQEGSRE 165 Query: 180 LASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNT 239 Q + W++ L G ++ ++P +S A +ADWL S Sbjct: 166 DDPRWGQVRSEILRWMAARSGFPLVAPGTALPELPIAVASAYASALVIADWLASNEDYFP 225 Query: 240 FLFNEDAPSDINALRTY----FQDRQQDASRVLELSGLVSNKRCYEGV----------HA 285 + ++ Y ++ R + + + R Sbjct: 226 LRPRPVDEAGKLSIDGYPELTADQQRDRVRRAWKRAAFPTPLRISTTPSDEVTDFYRHRF 285 Query: 286 LLDNGYQPRQLQVLVDALPVA--PGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFA 343 + Y+P + Q + P L ++EAP GSGKTE A A A L+ + V A Sbjct: 286 GWPDTYRPTEAQRAAIEIATGEDPDLMIVEAPPGSGKTELAFAAAEVLMRARGLQGVFVA 345 Query: 344 LPTQATANAMLTRMEASASHLFSSP----NLILAHGNSRFNHLFQSIKSRAIT----EQG 395 LPTQAT NAM R+ A + + + LAHG + N F + +R + Sbjct: 346 LPTQATTNAMFERVTAWLTSILGDEPQKLGIQLAHGRNSLNESFVKLLARGKSPLEVHDD 405 Query: 396 QEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVH 455 +E+ + +W+ Q + L + V TIDQVL++ L +H +R +G+ V+++DEVH Sbjct: 406 EEDLGLYASRWMGQRW-RSTLSPVVVGTIDQVLLAALKSRHVLVRHIGLMGKVVVIDEVH 464 Query: 456 AYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTY-------GLHTDPVENN 508 A D YM LEA L G V+LLSATLP ++ LL+ Y G+ + V+ Sbjct: 465 AADEYMETYLEAALTWLGMYGIPVVLLSATLPPARRLALLNAYRRGCGSSGVSAESVDVM 524 Query: 509 SAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGA 568 YP I+ G + +++ E P L +L+R +A G Sbjct: 525 IGYPAISTVSAAGVRVHEVVGEAEVPKRII-----PTSLGSPQEIAELLDRELA---DGG 576 Query: 569 QVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGK-RN 627 +I N V AQ Y+ ++ + + L H+RF +R ++ R++ FGK+ + R Sbjct: 577 CAVVIRNTVRDAQETYEAVRSVFGREQS-TLLHSRFLAVERAARDRRMLELFGKDSQQRP 635 Query: 628 VGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILL 687 ++VATQV+EQSLDVDFD ++T P DL+ QR+GRLHRH R RP+G +++ Sbjct: 636 FRHVVVATQVIEQSLDVDFDLMLTDPAPMDLVLQRIGRLHRHERDGRPSGLHDARCLVII 695 Query: 688 PDGEGYG-----RHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDE 742 D +++Y+ V+ RT I + + P Y + Y D Sbjct: 696 DDTTSSPWTYSRGTDYVYARYAVL-RTLAIIADREEILVREPLEYEELTTQAYADDVPVG 754 Query: 743 PEWVGNGMDKFESAE 757 P +D Sbjct: 755 PAQWHEALDAALEER 769 >UniRef50_D1NTH7 CRISPR-associated helicase Cas3, core n=1 Tax=Bifidobacterium gallicum DSM 20093 RepID=D1NTH7_9BIFI Length = 1019 Score = 520 bits (1339), Expect = e-146, Method: Composition-based stats. Identities = 238/995 (23%), Positives = 381/995 (38%), Gaps = 146/995 (14%) Query: 1 MEPFKYIC----------HYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVV--L 48 +EPFK + WGK+ + G L H D VAD W Q + Sbjct: 2 VEPFKKLQGSIDLSEAARSIWGKTDR--QTGEQWSPLYVHMHDAGFVADRLWYQWLPEHT 59 Query: 49 QNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQM 108 + T RN + ++F A+HDIGK FQ +S ++ S+ Q Sbjct: 60 KRTITRNFNNDYDLARKVVIFLAAVHDIGKATPIFQNRSIHISGDVD-GVKSMAWKPEQA 118 Query: 109 CRKFN---HGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILH 165 F+ G + + + E+ L D + F Y S V GHHG Sbjct: 119 GLPFSPYLEGVEPYHTIAGELILERYLTDTYGFTQRGARSYAS------VVGGHHGRPAE 172 Query: 166 S---QDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAG---LSINDIPPDCSS 219 + +D K EM +S A Q+ Q RE ++ LT A L ++ + Sbjct: 173 TGKLRDAYKRNAEMGSSDAYSLWQEVQ-RELIAFAIQISGLTDADMQRLRTLELGSHVAL 231 Query: 220 LLAGFCSLADWLGSWTTTNTFLF-------NEDAPSDINALRTYFQDRQQDAS--RVLEL 270 ++ G +ADW+ S + F + APS+ LR + A + Sbjct: 232 IITGMVIMADWIASNSDAGMFPLFPARASAEKSAPSEFRELRERGERGWSTAKLTPAWQA 291 Query: 271 SGLVSNKRCYEGVHALLDNGYQPRQLQ--------VLVDALPVAPGLTVIEAPTGSGKTE 322 S L H P+Q Q V + PG+ ++EAP G GKTE Sbjct: 292 SALEDLDNAQAVQHWFQQRFNMPQQAQMRPMQKKVVELCNAVEQPGIMIVEAPMGEGKTE 351 Query: 323 TALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSS--PNLILAHGNSRFN 380 AL A L + A V ALPT AT + M TR+ + L S ++ L+HG + N Sbjct: 352 AALMAAEILAAKTQAGGVCVALPTMATTDPMFTRVHSWLDALPSDTDKSVWLSHGKATRN 411 Query: 381 HLFQSIKSRA------ITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPV 434 F+ + +++ E ++ WL KK L +CT+D VL+ L + Sbjct: 412 REFRGLIAQSKSMASVYDETAPRKSNTMVADWL-WGRKKGPLANFLICTVDHVLMGALQM 470 Query: 435 KHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKL 494 KH +R L + +++VDE HAYD YM LE VL + V+LLSATLP ++ Sbjct: 471 KHVALRDLALANKIVVVDECHAYDRYMQQYLECVLTWLGGLQVPVVLLSATLPPALREAY 530 Query: 495 LDTY--------------------------------------GLHTDPVENNSAYPLINW 516 LD Y G T+ ++ AYPLI++ Sbjct: 531 LDAYMRGRKAEHAWEYQMNHAQLRTGSIRGRKKRQHPPESMGGSETEETDSRIAYPLISY 590 Query: 517 RGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNL 576 + RF+ + D + +L L + G ++C+ Sbjct: 591 TDGMHIHHAAVAPSGRSQTVRFN------AMGDDIEELCAL--LQDKLREGGCAAVVCDT 642 Query: 577 VDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFG-----KNGKRNVGRI 631 V AQ Y+ L++ ++ L HARFT +DRR KE +++ G +NGKR I Sbjct: 643 VGRAQKVYEALQDQYAAD-EVMLLHARFTDDDRRSKEEQLLHMLGNAATLENGKRPHCLI 701 Query: 632 LVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATIL----L 687 +V TQV+EQSLD+D D +I+ P DL+ QR+GR+HRH R RP IP + Sbjct: 702 VVGTQVLEQSLDIDVDLMISDIAPVDLIMQRVGRMHRHERSQRPPRVAIPECYVRGVTSW 761 Query: 688 PDGEGYGRHEHIYSNVRVMWR--TQQHIEELNGASLFFPDAYRQWLDSIYDDA--EMDEP 743 H+Y +M +E + P+ + Y E Sbjct: 762 QTPTFDNGVSHVYEKASLMEALTVLDITDEQACSEQLLPEDIAVVVREAYGADACERIPE 821 Query: 744 EWVGNGMDKFESAECEKRFKARKVLQW---------AEEYSLQD-----------NDETI 783 +W + + + K ++ + A + +L D +E Sbjct: 822 QWHASYEKAVQVRDEHDESKQKRATDYCLKQLDTMLASKETLVDFFGRAGLLDRQGEERG 881 Query: 784 LAVTRDGEMSLPLLPYVQTSSGKQLL---DGQV-----YEDLSHEQQYEALALNRVNVPF 835 + RD + SL ++ VQ G + DG + + + + + +A+ + +P Sbjct: 882 MQAVRDAQESLEVMLLVQDEDGVLHVLDEDGGLGPVVPADTIPNSRIVDAMLGQMIRLPL 941 Query: 836 TWKRSFSEVVDEDGLLWLEGKQNLD-GWVWQGNSI 869 + ++ + ++ + WQ + + Sbjct: 942 SLTHPKNDGDCIEAIIEDLERTGGHYAMAWQESPM 976 >UniRef50_Q0BSC3 Superfamily II DNA and RNA helicase n=2 Tax=Alphaproteobacteria RepID=Q0BSC3_GRABC Length = 832 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 239/880 (27%), Positives = 368/880 (41%), Gaps = 109/880 (12%) Query: 11 W-GKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLF 69 W GKSS +T H +H LDVAAVA+ + V + ++ L+ Sbjct: 6 WPGKSS--VTPDGPEHPAAFHMLDVAAVAERLIEPFGVAR------------PLRDALVV 51 Query: 70 FIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSE 129 ALHDIGK F + L+ A P F H W + L Sbjct: 52 MTALHDIGKISESF-----RAMLREGVAQPG-----------FRH------WELSEVLFY 89 Query: 130 QSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFIL-HSQDQDKSRWEMPASLASYAAQDK 188 + P + + A+ GHHG H +P L Sbjct: 90 VEDARIAARLGGTPLVRKMLY---AAIAGHHGRPSEHMLGALPPEARLPRELVRALKCVG 146 Query: 189 QAREEWISVLEALFLTPAGLSINDIP----PDCSSLLAGFCSLADWLGSWTTTNTFLFNE 244 + RE +++ F S+ + S LAGFC+ ADW+GS Sbjct: 147 EGREPAARLMDVFFDLWPEASLEGLTLAEATTLSWWLAGFCAAADWVGSNLGWFP----- 201 Query: 245 DAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALP 304 ++ ++L Y Q + A+R + +G+ + + +P Q+ ALP Sbjct: 202 -PKTEADSLAAYLQQTRAIAARAVVEAGIAGTMVRQGKLFDFV---LRPMQVACSTIALP 257 Query: 305 VAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHL 364 P L ++E TG+GKTE AL + + ALPT AT +AM R + Sbjct: 258 DGPTLAIVEDGTGTGKTEAALILVHRFCQAGKGRGLFDALPTMATTDAMFDRASRIVGRM 317 Query: 365 FSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTI 424 F +P++ LAHG + + F+ + R+ T E + WL++ N++ L +G+ TI Sbjct: 318 FDNPSVTLAHGRAGLSVPFRELVQRSRTGGPGE---ITSSDWLAEGNRRALLADVGIGTI 374 Query: 425 DQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAY-DTYMNGLLEAVLKAQADVGGSVILLS 483 DQ L+SVLPV+ + +R G+ +L+VDEVH + Y+ L A+LK GGS ILL+ Sbjct: 375 DQALLSVLPVRFQTLRIYGLSSKILLVDEVHEMGEAYIAEELTALLKMHRAAGGSAILLT 434 Query: 484 ATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPE 543 ATLPM + KLL TY D +N AYP + G +F +P + Sbjct: 435 ATLPMSLRSKLLATY----DGASDNPAYPALTIAGGEAITQFPAEDYPVK---------G 481 Query: 544 PICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHAR 603 P+ + + + + A GA + N VD A + L+ V+ L HAR Sbjct: 482 PVKVERLDTAADAVTLLTGMAAQGAACVWVRNAVDDAIEAVEALRA---AGVEARLIHAR 538 Query: 604 FTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRL 663 F L DR+ E +++ GKNGK G +LV TQV+E SLD+DFD +++ P L QR Sbjct: 539 FALCDRKRIEAEILATVGKNGKGRAGFVLVGTQVLESSLDLDFDVMVSDIAPIAALIQRA 598 Query: 664 GRLHRHH--RKYRPAGFEIPVATILLPDGE----------GYGRHEHIYSNVRVMWRTQQ 711 GRL RH R PV +L PD G+ +Y+ V WR+ + Sbjct: 599 GRLWRHMDIRPVSVRPVAGPVLYVLSPDPSLVEDERWLHGTLGKGAWVYALADV-WRSAR 657 Query: 712 HIEELNGASLFFPDAYRQWLDSIYDDAEMDEPE-WVGNGMDKFESAECEKRFKARKVLQW 770 + + PD R ++++Y PE + DK+ ++ ++++ Sbjct: 658 VL--FTQGQIGTPDRQRALIEAVYGTDTEPVPEALLKAEQDKYGKDSADRGLAWHNIVKF 715 Query: 771 AEEYSL-QDNDETILAVTRDGEMSLPLLPYVQTSSG------KQLLDGQVYEDLS-HEQQ 822 + Y D+ + TR GE L +T +G + D D+S H ++ Sbjct: 716 TDGYRKAGRGDDDVNYPTRLGEEVRVLRLARRTRTGLVPWAEGEGEDAWALSDVSAHRKK 775 Query: 823 YEALALNRVNVPF---------TWKRSFSEV--VDEDGLL 851 +AL L + P WKR+ + VDEDG + Sbjct: 776 LDALPLPDQSSPEIMKITKDWPEWKRAQIRLCPVDEDGSI 815 >UniRef50_Q2JH31 CRISPR-associated helicase Cas3, core n=2 Tax=Frankia RepID=Q2JH31_FRASC Length = 962 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 227/905 (25%), Positives = 350/905 (38%), Gaps = 104/905 (11%) Query: 5 KYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVK 64 ++ WGKS++ G +HLL+ H LD AAV + WD+ + R + S R + Sbjct: 16 EFFGMIWGKSAE--KAGGSMHLLLGHLLDTAAVGELVWDRFLA-STIRDRLDDCSDGRGR 72 Query: 65 AWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQ 124 + LHD+GK FQ K ++ A G + Q R+++H AG Sbjct: 73 SLFALLCGLHDVGKATPAFQMKDEGLAQRVRAAGLGWRGVTPQQGRQWHHARAGAV---- 128 Query: 125 DSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYA 184 + + L P W V GHHG I D+ R ++ Sbjct: 129 --IVRKYLPQV-----GWSRPGCDW--VWPLVAGHHGLIP-----DRGRLVHKPAVHGAG 174 Query: 185 AQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSL-LAGFCSLADWLGSWTTTNTFLFN 243 R V L + A S P L L+G +ADW+ S L + Sbjct: 175 PWLDVQRAFVDRVAGDLNVDLASFSELRTPSRGGQLALSGMIIMADWVASDKEHFGGLSD 234 Query: 244 EDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALL---DNGYQPRQLQVLV 300 S + ++R Q A L L G + R G + L G R Q Sbjct: 235 LAEISMKGS-----RERAQRAWAQLGLRGGWRSDRPAPGNQSDLVHHRFGKPARPAQRAA 289 Query: 301 DALP---VAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRM 357 PGL ++EAP G GKTE ALA A L + AD V +PTQAT++ M +R+ Sbjct: 290 VQAVREMPGPGLLILEAPMGEGKTEAALAAAEVLAGKVGADGVFVGMPTQATSDPMFSRV 349 Query: 358 EASASHLFSSPNLILAHGNSRFNHLFQSIKS--------RAITEQGQEEAW--------- 400 + + + L HG +RFN + +++S + E G + + Sbjct: 350 RGWLTAVDPEVPIGLLHGRARFNKEWAALRSQVRFVDVHDDLDEYGMADDFGTGTSGPGR 409 Query: 401 --------VQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVD 452 +W +K+ L + V T+D +L + KH +R G+ V+I+D Sbjct: 410 RDAPLAGAAAAAEWFF-GSKRGLLAAVTVGTVDHLLQAATRTKHVMLRHAGLAGRVVILD 468 Query: 453 EVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTY--------GLHTDP 504 EVHAYD YM L L+ AD G VI+LSATLP + +L Y + Sbjct: 469 EVHAYDVYMAQFLFEALRWLADTGVPVIVLSATLPPVLRAQLAGAYLQGALQRPDVDLAD 528 Query: 505 VENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAA 564 + + YP + + + + E + +++ + A Sbjct: 529 LPRPTGYPSTTAVYMADGKPRFSVTSQSPWRESVPVAVEILAEPTDFAPVSIAAAVSAEV 588 Query: 565 NAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNG 624 + G ++CN V AQV Y L+ D+ L H+RFT +R + V+ G G Sbjct: 589 SEGGCALVVCNTVQRAQVVYAELRTTFGD--DVVLLHSRFTAAERASRTEDVVDKLGPPG 646 Query: 625 K-----RNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRK--YRPAG 677 + R ++VATQV EQS DVD D L+T P DLL QR+GRLHRH R RPA Sbjct: 647 RENAQDRPARLVVVATQVAEQSFDVDVDILVTDLAPIDLLLQRVGRLHRHDRPTGQRPAR 706 Query: 678 FEIPVATI---LLPDGE---GYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWL 731 P + LPDG +Y + ++ E G P + Sbjct: 707 LRDPKVIVSGLRLPDGAVPLWPAGSRAVYGDHLLLRSAALVAEAATGGGWSIPADVPGLV 766 Query: 732 DSIYDDAEMDE---PEWVGNGMDKFESAECEKRFKARKVLQWAEE--------------Y 774 Y D + + ++E+ E +R A L E+ Sbjct: 767 ALGYGDEPLGPARWADAAAEARQEWEAKERRRRVNATGFLLSGEDGLGLTTLEGLHDKAT 826 Query: 775 SLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYE-----DLSHEQQYEALALN 829 + + +E + AV RD + S+ ++ + +G L G+ +S + E + Sbjct: 827 APLETEERLTAVVRDSDESVEVVLVRRGPAGYLTLAGRSLGHIGEVAVSDDAVLEEVVGA 886 Query: 830 RVNVP 834 + +P Sbjct: 887 TIRLP 891 >UniRef50_D1A6Q2 CRISPR-associated helicase Cas3 n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1A6Q2_THECD Length = 933 Score = 517 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 214/951 (22%), Positives = 349/951 (36%), Gaps = 96/951 (10%) Query: 11 WGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSK--QRVKAWLL 68 WGK + ++ H +D AA+A WD + + + +++ + Sbjct: 2 WGKRDGLPGP----YPVVCHLIDTAAIAGALWDVWTAGLGVLRADVLGERVAAHMRSLVC 57 Query: 69 FFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLS 128 F+ LHDIGK FQ + + KL T + + H + L Sbjct: 58 FWAGLHDIGKVSPSFQVLVGDLYQKL--VTEASEYEQDEAISGLRHNEVTQW-----VLV 110 Query: 129 EQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDK 188 E + D+A + + GHHG + + + R ++ Sbjct: 111 EIFRALGYPAADSARRDVGHQI--AQLLGGHHGRFCAAMRRPELRAPRSRPGVGRGVWEE 168 Query: 189 QAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTN-TFLFNEDAP 247 Q R + E + +P + ++ G +ADWL S + + E Sbjct: 169 QCRAHAAVLRE--LTGAREVLRERLPVPVAVVVLGIVIVADWLASQESFIVARMPGEGWE 226 Query: 248 SDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLV----DAL 303 + LR +++ DA +V+ +GL L +P LQ V L Sbjct: 227 ASPEELRAHWERAVADAPQVVRDAGLGRGLLEDRTFRELFGFD-EPNPLQASVMKELPEL 285 Query: 304 PVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASH 363 PGL + AP G GKTE AL A L A+ + F LPT AT +AM R+ A Sbjct: 286 VNGPGLVLCTAPPGDGKTEAALYAAGVLARACGANGLGFCLPTMATTDAMHKRVSRFARR 345 Query: 364 -LFSSPNLILAHGNSRFNHLFQSIKSRAITEQG----QEEAWVQCCQWLSQSNKKVFLGQ 418 L L H + + + EA + QWL + ++ L Sbjct: 346 ALREDAALTKVHSMAWLSSDAAGDAAAGAAGGDAVITDAEASTEAAQWL-HAGRRGLLAP 404 Query: 419 IGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGS 478 + TIDQ L VLPVK+ +R + + V+++DE H+YD +M+ LL L+ + Sbjct: 405 LTTFTIDQGLTGVLPVKYNVLRLMAMAGKVVVIDEAHSYDAWMHALLLRWLEWLGALRAP 464 Query: 479 VILLSATLPMKQKQKLLDTY---GLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLP 535 VILLSATL + L++ Y HT P E YP + + Sbjct: 465 VILLSATLTGAAARSLVEAYLRGAGHTVPQELRPCYPGWLFADAVTGTVHPPREVTSERE 524 Query: 536 PRFSIQPEPICLADMLP----DLTMLERMIAAANAG--AQVCLICNLVDVAQVCYQRL-- 587 + + P+ L +++ ++A G V + C V AQ Y+ L Sbjct: 525 RAVAFEMVPVRRGKDPSRPGHRLAVIKDLLAQVVNGDRGCVLVCCTTVPEAQDTYRYLAD 584 Query: 588 -----KELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSL 642 E ++ L H+R+ DR +FGK G R +LVATQ+VEQSL Sbjct: 585 WFRRVAEEGGRPPELRLLHSRYRARDRAAITEACERDFGKEGGRP-RTVLVATQIVEQSL 643 Query: 643 DVDFDWLITQHCPADLLFQRLGRLHRH-------HRKYRPAGF-EIPVATILLPDGEG-- 692 D+DFD LIT P LL QR GR RH HR+ RP P +L P + Sbjct: 644 DLDFDLLITDLAPMALLLQRSGRCQRHRDGRIDLHRERRPDWAGAAPRVIVLNPVDDQGE 703 Query: 693 ---YGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNG 749 +Y + ++ RT + + + P + +D++Y + Sbjct: 704 FAVPEEWGGVY-DESLLHRTSRLLHARGAEPVQIPGDVQALVDAVYAEDFTSVVALDEAN 762 Query: 750 MDKFESAECEK-------RFKARKVLQWAEE-------YSLQDNDETILAV---TRDGEM 792 + A+ E+ R A V+ + +L + + + TR G Sbjct: 763 ARRIVRADGERLGGEAAQRQTADLVMICSPRDGKLRDLRNLSEAQAKVSSAWLTTRLGAD 822 Query: 793 SLPLLPYVQ--------TSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEV 844 S L+ + +G+ + G Q +A + VP + +E+ Sbjct: 823 SERLVCVYEQSPGVWTLDETGRIPVPGMEGRSRVTRDQARLIAEYMIPVPGRYCGEEAEL 882 Query: 845 VD-----------EDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMTRVIP 884 ++ D L + + GW + +TY + G+ + P Sbjct: 883 LEPPPSWDKNAVLRDWKLLPMRRASDGGWYGRLRPGQVTYQANVGLQMLYP 933 >UniRef50_Q1J371 CRISPR-associated helicase Cas3, core n=1 Tax=Deinococcus geothermalis DSM 11300 RepID=Q1J371_DEIGD Length = 971 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 243/943 (25%), Positives = 367/943 (38%), Gaps = 116/943 (12%) Query: 11 WGKSSKSLTKG--NDIHLLIYHCLDVAAVA-DCWWDQSVVLQNTFCRNEMLSKQRVKAWL 67 W KS+K G ++ H LDVAA A + + + F + L ++ AW Sbjct: 26 WAKSAKKNADGTQGAWLPVLNHLLDVAACAAEILALEPPQTRMLFEADLGLEGEQALAWT 85 Query: 68 LFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSL 127 L +ALHD+GK FQ AE ++PA L P HG + Sbjct: 86 LALVALHDLGKASPAFQVLWAEGKDGVDPA---LRFPPDLRKPYAPHGV----------V 132 Query: 128 SEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQD 187 ++ L DF P +AV HHG +D + R + A+ Sbjct: 133 TQAVLPDFL---TGLGWPRPLARAVADAVGCHHGLRAEDRDLNLPRAQTGD------ARW 183 Query: 188 KQAREEWISVLE--ALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNED 245 Q R E ++ A +++ P LAG S ADWLGS D Sbjct: 184 GQVRRELCRLVALGTGARHDAVPTLSSFSPAAFMRLAGLTSFADWLGSS---FPLPTQTD 240 Query: 246 APSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHAL--------LDNGYQPRQLQ 297 + + YF ++ A + L + E + AL D +QPR LQ Sbjct: 241 FSAYEDPA-AYFGRTRERARQTLAEIRWPAFAPLREELPALPEVFRYVVKDGAFQPRPLQ 299 Query: 298 VLVDAL---PVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAML 354 + P L ++EAP G GKTE A +L + ALPTQAT NAM Sbjct: 300 TKLAQALEGVSGPALVLVEAPMGEGKTEAAFYAHLQLQRAAGHRGMYVALPTQATGNAMY 359 Query: 355 TRMEASA--SHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEA----WVQCCQWLS 408 R + P+L LAHG + N FQ+ R G V+ +W + Sbjct: 360 ERFAQFLAAQGRPTPPDLQLAHGGTLLNEKFQATIERTRNAPGDPAEAGGYSVRAEEWFT 419 Query: 409 QSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAV 468 + K+ L + GV T+DQ L+ VL V H+F+R G+G V+++DEVHAYDTY + L+ A+ Sbjct: 420 -NRKRALLSEYGVGTVDQALLGVLGVPHQFVRLWGLGNRVVVLDEVHAYDTYTSELIAAL 478 Query: 469 LKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLL 528 + +G SV+L+SATLP ++ LL +G+ P + YP + V G + + Sbjct: 479 VAWLRALGSSVVLMSATLPEASRRALLRAWGMEDAPTAD---YPRLTVAPVGGKVQTLTI 535 Query: 529 AHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCY-QRL 587 +++ + + + A G V +I N V AQ + L Sbjct: 536 PDQDEVGNTSRPRQHVTLRPLGSEVGEVARHAVDLAADGGCVAVIVNTVARAQAVQTEVL 595 Query: 588 KELNNTQ----------------VDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRI 631 EL V + L+HAR+ ++R E+E RV+ GK G+R I Sbjct: 596 AELERRGITARTCTRGGGGDPRAVGVLLYHARYPADERGEREKRVLRYLGKEGQRPTRFI 655 Query: 632 LVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKY-RPAGFEIPVATIL---- 686 L+ATQV EQSLD D D ++T P DL+ QR GRLHRH + G E V + Sbjct: 656 LIATQVAEQSLDFDADVMLTDLAPVDLVLQRAGRLHRHAENAGKRRGHEEAVLFVSGLDE 715 Query: 687 LPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWV 746 PD +++R+ + L PD + + +Y E PE Sbjct: 716 WPDESLKREFWGRVYAPALLYRSWLTLRRRLAGGLTLPDDLDELVQEVYAP-EFAAPELT 774 Query: 747 GNGMDKFESAEC---EKRFKARKVLQWAE-----------EYSLQDNDETILAV------ 786 ++ +AE +R +A + D D +V Sbjct: 775 PEQREQLAAAEAVLDNQRGNEATTGSFAHIGCPADFWSTRLHHHPDADPDSESVSDDPTA 834 Query: 787 ----------TRDGEMSLPLLPYVQTSSG-----KQLLDGQVYEDL-----SHEQQYEAL 826 TR GE S+ ++P + G + + ED+ + +++ Sbjct: 835 VGAEEDDFPRTRLGEESVRIVPVERREDGVWRVCRSPFWARDAEDVLPRFGTLDKRDTEH 894 Query: 827 ALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSI 869 A R E G LW EG + W+ + + Sbjct: 895 ARKIYRRSLGVSRPELVRAAEQGTLW-EGSLGTEHRGWRAHPL 936 >UniRef50_A5UR18 CRISPR-associated helicase, Cas3 family n=1 Tax=Roseiflexus sp. RS-1 RepID=A5UR18_ROSS1 Length = 927 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 228/849 (26%), Positives = 347/849 (40%), Gaps = 76/849 (8%) Query: 7 ICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSV--VLQNTFCRNEMLSKQRVK 64 + +WGK+ + T H I+H LDVA VA+ V Q + + Sbjct: 8 LLQFWGKTPRPGTPVTQFHPAIFHMLDVACVAEALLRHGPQRVRQALLHAWRGADPEALI 67 Query: 65 AWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQ 124 +WL F IALHD+GK FQ + +L A S ++ +H A W + Sbjct: 68 SWLPFLIALHDLGKLSAAFQGQDEAQRERLTRAGVQFRSHSPEL----HHAAISALWIH- 122 Query: 125 DSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHS--QDQDKSRWEMPASLAS 182 D+ + + W + +A GHHG + +D K + + Sbjct: 123 ---------DYLAQNEPEIAQDLVWI-FRDATGGHHGRFVDESMEDLRKKLHYVERGESR 172 Query: 183 YAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLF 242 + KQ +L + P + L G +DW+GS Sbjct: 173 WRDWRKQGYVLLRDLLAPEDKPLHRIGTPVAPRPATVALTGLLVWSDWIGSNEHDFPATP 232 Query: 243 NEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDA 302 DI+ + + R Q+A L S + L PR LQ +VD Sbjct: 233 G----MDIHCYLSLSRQRAQNALTTHYLRA--SRSQPQYSDFRALFQAIAPRPLQAVVDR 286 Query: 303 LPVA----PGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRME 358 L P L VIEAPTG GKTE ALA A ++ + D + FALPT AT N M TR+E Sbjct: 287 LSDNDLRQPALVVIEAPTGEGKTEAALALARRIAALRGIDEIFFALPTMATGNQMFTRLE 346 Query: 359 ASASHLFSSP-NLILAHGNSRF--NHLFQSIKSRAITEQGQEE--AWVQCCQWLSQSNKK 413 L+ ++ L+H + + L + + A ++ E + W KK Sbjct: 347 RFFRTLYGDGGSVRLSHSQAIVVEDDLRRRVTLSADQDRSDPEGCSADVMLGWF-VGPKK 405 Query: 414 VFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQA 473 L GV T+DQV + L V+H +R G+ V+++DEVHAYD YM+ +LE L A Sbjct: 406 AMLAPFGVGTVDQVELGGLNVRHYPLRLFGLASKVVMIDEVHAYDAYMSVILEHTLAWLA 465 Query: 474 DVGGSVILLSATLPMKQKQKLLDTYGLHTDP-----VENNSAYPLINWRGVNGAQRFDLL 528 +G S+ILLSATLP ++ L + T+P + YP ++ Sbjct: 466 TLGCSIILLSATLPRQRHDALARAFLRATEPAAALSLPEKLPYPALSLYHATAQSHHTCD 525 Query: 529 AHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLK 588 + + + + R++ G V ICN VD AQ Y+ L Sbjct: 526 VFRGEQRFILRFRKQSAPEEE-------AGRLLELIRNGGAVARICNRVDDAQAIYRALI 578 Query: 589 ELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKR-NVGRILVA-TQVVEQSLDVDF 646 V L HARF L++R+ +E + + GK+ +R RI++A TQV+EQSLD D Sbjct: 579 ASGARDVTCVLLHARFPLHERQRREQCISNLVGKDSQRTPEQRIIIAGTQVLEQSLDYDV 638 Query: 647 DWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGE----GYGRHEHIYSN 702 D +++ P DLL QR GRLHRH+R RP PV I++P E + R IY Sbjct: 639 DVMVSDFAPIDLLLQRAGRLHRHNR-CRPDDHREPVLEIVIPYDEQGEPDWRRWRAIYEP 697 Query: 703 VRVMWRTQQHIEE---LNGASLFFPDAYRQWLDSIYDDAEM--DEPEWVGNGMDKFESAE 757 ++WR+ + + + + P YR ++++Y A + V ++ Sbjct: 698 Y-ILWRSLATLCDGLTDDTRIVTLPRDYRTLIEAVYSAAPVVGRYAGEVAKAEQEYRKTI 756 Query: 758 CEKRFKARKVLQWAE----------EYSLQDNDETILAV-----TRDGEMSLPLLPYVQT 802 + KAR L S + + A TR G+ + L+P + Sbjct: 757 DAQTAKARSPLTPDAMIRAPIVEHGGRSYIEEETGAEASWQLAKTRLGDR-VTLVPVYRV 815 Query: 803 SSGKQLLDG 811 + L G Sbjct: 816 NGEVSLDPG 824 >UniRef50_C7QEM7 CRISPR-associated protein, Cse1 family n=12 Tax=Actinomycetales RepID=C7QEM7_CATAD Length = 1540 Score = 509 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 216/861 (25%), Positives = 321/861 (37%), Gaps = 95/861 (11%) Query: 11 WGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRV--KAWLL 68 W KS LI H D AA+A+ WDQ + E L + V + + Sbjct: 30 WAKSDP---DSGQSLSLIRHLADSAAIAEHLWDQWLPDHVKSLIAEGLPEGLVDGRTLAV 86 Query: 69 FFIALHDIGKFDIRFQYKSAESWLKLNPATPSL--NGPSTQMCRKFNHGAAGLYWFNQDS 126 + HDIGK F + + + R HG AG + Sbjct: 87 WLAGTHDIGKLTPAFACQCEPLAQAMRECGLDMPTRTQFGDDRRVAPHGLAGQVLLREW- 145 Query: 127 LSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFIL-----HSQDQDKSRWEMPASLA 181 + S + GHHG H D P + Sbjct: 146 -----------LMERHGWSGRSADAFTVIAGGHHGVPPSYSQLHDLDAYPELLRTPGASE 194 Query: 182 SYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFL 241 + + +V+ A + LL G +ADW+ S T + Sbjct: 195 GIWKSSQHELLDACAVMTGASSRLAHWRGLRLSQQAQVLLTGLVIVADWIASNTDLFPYP 254 Query: 242 FNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVH------ALLDNGYQPRQ 295 + I+ + R + A R LEL + K G+ L Q R Sbjct: 255 ALGTGEAAIDPGK-----RVELAWRGLELPAPWAPKYLMPGMQGLLASRFGLPADAQLRP 309 Query: 296 LQVLV---DALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANA 352 +Q + + APGL VIEAP G GKTE AL A L + A V ALPTQAT+NA Sbjct: 310 VQQMAVQLASANAAPGLLVIEAPMGEGKTEAALLAAEILAARSGAGGVFLALPTQATSNA 369 Query: 353 MLTRMEASASHLFSS--PNLILAHGNSRFNHLFQSIKSRAIT-----------------E 393 M R+ + ++ LAHG + + F S A + Sbjct: 370 MFARVVNWLRQVPREGVASVHLAHGKAALDDAFASFLRAAPRLTSIDADGYAGEANVRRD 429 Query: 394 QGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDE 453 + A + QWL + KK L V TIDQ+L + L +H +R L + V+++DE Sbjct: 430 RRAGSADMVAHQWL-RGRKKGILSPFVVGTIDQLLFTGLKSRHLALRHLAVAGKVVVIDE 488 Query: 454 VHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENN--SAY 511 VHAYD YM+ LE VL V+LLSATLP ++Q L++ YG T + AY Sbjct: 489 VHAYDAYMSVYLERVLSWLGAYRVPVVLLSATLPADRRQALVEAYGGITSEALRDAREAY 548 Query: 512 PLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVC 571 P++ + + E +++ L + +R+ A G Sbjct: 549 PVLTAVTIGAPAQAVGTEPAEGRRVDVNVEAFDDDLGR------LADRLEAELVDGGCAL 602 Query: 572 LICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRI 631 +I N V Q+L+E + + H+RF DR K+ +++ FG +G R I Sbjct: 603 IIRNTVGRVLQTAQQLRERFGAG-QVTVAHSRFIDLDRARKDADLLARFGHDGARPRRHI 661 Query: 632 LVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHR-----KYRPAGFEIPVATIL 686 +VA+QV EQSLD+DFD L+T P DL+ QR+GR+HRHHR RP + Sbjct: 662 VVASQVAEQSLDIDFDLLVTDLAPIDLVLQRMGRVHRHHRGGPEQSERPPSLRTARCLVT 721 Query: 687 LPDGEGYGRHE-----HIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMD 741 D G +Y ++ L G++L P + Y + + Sbjct: 722 GVDWAGIPSAPIAGSVAVYGLHPLLRSLAVLQPYLTGSALTLPGDINPLVQCAYAQSFVA 781 Query: 742 EPEWVGNGMDKFESAEC----------------EKRFKARKVLQWAEEYSLQDNDETI-L 784 W G MD ++ E R R ++ W + +D Sbjct: 782 PTGW-GEAMDAAQAEHMAHIVQQREGAMAFCLDEVRGPGRSLIGWIDGGVGDADDTRAGR 840 Query: 785 AVTRDGEMSLPLLPYVQTSSG 805 A RD ++ +L + S G Sbjct: 841 AQVRDSPETIEVLVVQRGSDG 861 >UniRef50_C7MTA6 CRISPR-associated helicase Cas3 n=1 Tax=Saccharomonospora viridis DSM 43017 RepID=C7MTA6_SACVD Length = 919 Score = 508 bits (1307), Expect = e-142, Method: Composition-based stats. Identities = 221/891 (24%), Positives = 345/891 (38%), Gaps = 92/891 (10%) Query: 8 CHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQ--SVVLQNTFCRNEMLSKQRVKA 65 +WGK + L+ H LD AA W + S ++ L++++ Sbjct: 6 LRFWGKERGLE---GARYPLVCHGLDAAAAVRWLWKRYLSARVRAGLAEAVGLTEEQTCR 62 Query: 66 WLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQD 125 L F+ A HD+GK FQ + L R+ H A W Sbjct: 63 VLEFWAAAHDVGKLTPGFQEQVGVPEGYL----------PDSTGRRCRHEEASHIWLPSA 112 Query: 126 SLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAA 185 + + + + + + GHHG +D R M L + Sbjct: 113 LTAVEHTTN-----------SRNARLIAQMLGGHHGVF-RRRDSADFRPGMFVHLGLGDS 160 Query: 186 QDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTT-NTFLFNE 244 R + AL P + +++ G LADWL S + L + Sbjct: 161 SWDLQRHAHLQAWRALLEPP--TLPRRLSRHAAAVATGVVILADWLVSQIDYVRSRLPSL 218 Query: 245 DAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALP 304 D+ +L + ++ V+ +GL S R G +P +LQ + A Sbjct: 219 PEQGDLPSLSEFLSGSREATESVVRQAGL-SRLRLRGGTFEEEFGFDEPNELQSSIAAEL 277 Query: 305 VA----PGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEAS 360 PGL +I APTG GKTE AL A L D + FALPT AT++ M R+ Sbjct: 278 PGLLGNPGLLMIAAPTGFGKTEAALHAARLLSDAAGTSGMFFALPTMATSDEMFNRIARY 337 Query: 361 A-SHLFSSPNLILAHGNSRFNHLFQSIKSRAITE--QGQEEAWVQCCQWLSQSNKKVFLG 417 + L HG + L ++++ E +E V +WL Q K+ L Sbjct: 338 VVRRAETGVAQSLLHGMAWLKPLRETLEQIHAEEGLSSDDETQVHGLEWL-QGLKRAMLA 396 Query: 418 QIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGG 477 +GV TIDQ L++VLPV+H +R + +++DEVHA+ YM LL +L + Sbjct: 397 PVGVGTIDQALLAVLPVRHNALRLFSLLGKTVVIDEVHAFSPYMRRLLCTLLGWLGEWNV 456 Query: 478 SVILLSATLPMKQKQKLLDTYGLHT--DPVENNSAYPLINWRGVNGAQRFDLLAHPEQLP 535 V+LLSATLP +L Y P + YP + + + P Sbjct: 457 PVVLLSATLPRNIAAELAAAYRGQNTGTPPDVPVPYPGWTYIERESGIKTRSVDFPRSHR 516 Query: 536 PRFSIQPEPICLA-----DMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKE- 589 S+Q P+ +A D LP L + I G ++C V AQ Y+ L++ Sbjct: 517 RTLSVQLRPVAVARESGPDRLPVLREVLAPIVVDEGGGCALVLCTTVAEAQQTYRALRDW 576 Query: 590 LNNTQVDIDLFHARFTLNDRREKENRVISNFGKN----------GKRNVGRILVATQVVE 639 L T VD+ L HAR+ ++ R ++ FGK G R ++VATQVVE Sbjct: 577 LGETDVDLRLLHARYPMHRRETLTAELMRAFGKPQHGDGGASHVGNRPAKAVVVATQVVE 636 Query: 640 QSLDVDFDWLITQHCPADLLFQRLGRLHRHH--RKYRPAGFEIPV------ATILLPDGE 691 QSLD+DFD +++ P +LL QR GRL RH +RPA ++ + PDG+ Sbjct: 637 QSLDLDFDLVVSDLAPIELLLQRAGRLQRHSGWDPHRPAWADVSRGGQRRFIVLTAPDGD 696 Query: 692 GY---GRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGN 748 + + IY + ++ R + + E + PD ++ +D P+ Sbjct: 697 LHRLPRSWKFIYPPISLI-RAHRLLAERAARGVRIPDDVQELVDR---GNPGQFPDLDDP 752 Query: 749 GMDKFESAECEKRFKARKVLQWAEEYSLQDND-------------ETILAVTRDGEMSLP 795 + F E + ++ A+ S+ E TR S Sbjct: 753 SVSGFTEEEIRRSAESLVETGTADSASIPVPKALTNLTDLSKGPLEEEQVTTRFNADSHR 812 Query: 796 LLPYVQTSSGKQLLDGQVYEDLSHEQ-------QYEALALNRVNVPFTWKR 839 LP +T G L G E L + + +++ + V VP + R Sbjct: 813 ALPVFRTHDGALRLGGAHGEPLPVPREGKLSKDELKSIMKHTVPVPGSVVR 863 >UniRef50_B7KJ22 CRISPR-associated helicase Cas3 n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7KJ22_CYAP7 Length = 908 Score = 507 bits (1306), Expect = e-142, Method: Composition-based stats. Identities = 195/847 (23%), Positives = 335/847 (39%), Gaps = 83/847 (9%) Query: 8 CHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQ--SVVLQNTFCRNEMLSKQRVKA 65 W K K ++ H ++H +D A V + S L + + ++ + + Sbjct: 5 LLLWAKLDKKNSE--IYHPPLFHLIDTATVTKALLTKGLSPYLVSRLSESLEINHESLLQ 62 Query: 66 WLLFFIALHDIGKFDIRFQYKSA---ESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWF 122 + F HD+GK FQ+++ E KL + + K HG Sbjct: 63 FAPFLSGSHDLGKIAPDFQFQNDQGSEIAKKLMGESSYSLWQKNRERNKILHGTITAVTL 122 Query: 123 NQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLAS 182 + + + GHHG H D +++ S Sbjct: 123 PE-------------YLENFGLDSIIAEELAVITGGHHGIFPHPNDIKNAKYS--KSNIG 167 Query: 183 YAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLF 242 K +E +++ + + P +LAG +L+DW+ S Sbjct: 168 KKHWIKLRKETVDELVKYTKIEKKDFPTK-LTPASKIILAGLITLSDWIASNQAWF---- 222 Query: 243 NEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNG----YQPRQLQV 298 P L Y + + + L SG + + + + ++PR LQ Sbjct: 223 ---RPCSNKPLEEYVKTIDEKVDKALRESGWIGWESHDSTLPSKKLFNYIKEFEPRHLQE 279 Query: 299 LVD----ALPVAPGLTVIEAPTGSGKTETALAYA-WKLIDQQIADSVIFALPTQATANAM 353 ++ L P L +IE PTG GKTE ++ A W + IA FALPTQAT+N + Sbjct: 280 EIEKKMPELQDKPFLLIIEGPTGEGKTEGSIIVAEWCGVSGGIARGAYFALPTQATSNEL 339 Query: 354 LTRMEASASHLFSSPNL--ILAHGNSRFNHLFQSI---KSRAITEQGQEEAWVQCCQWLS 408 R+ + + + L H N++ + F + + ++ + V +W + Sbjct: 340 YKRISQYLRNRYPLQKVPFHLVHSNAQLSDTFSETIICRLDQVYDEDKHPPGVIANEWFT 399 Query: 409 QSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAV 468 K+ L G TIDQ L+ +L KH F+R G+ +I+DE+HAYD Y + L+E + Sbjct: 400 Y-RKRPLLSPWGTGTIDQALMGILRSKHNFVRLFGLAGKTVILDEIHAYDAYTSTLIEWL 458 Query: 469 LKAQADVGGSVILLSATLPMKQKQKLLDTYG---LHTDPVENNSAYPLINWRGVNGAQRF 525 L+ A +G V+ +SATL KQ++ + Y + P+ N YP + Q Sbjct: 459 LEWLAALGSPVVAMSATLSQKQRETFVAAYSRGFGESAPILNQCPYPRLTICSPKIEQNK 518 Query: 526 DLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQ 585 + + +L I+ E I A + L + G ++ + AQ YQ Sbjct: 519 VISFNISKLNASRKIRFEWIDEAQIPQILE------NSLKQGGTAAILRTQIAWAQQTYQ 572 Query: 586 RLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKN---GKRNVGRILVATQVVEQSL 642 L ++ + L H+RF DR+++E R ++ +GK K ATQ++EQSL Sbjct: 573 DLIPSTFSKDERILLHSRFLHIDRKQQEKRCLAVYGKEVDKTKVRPRSACAATQIIEQSL 632 Query: 643 DVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGE------GYGRH 696 D+DFD +I+ P DLL QR+GR+ RH R RP G P+ ++ P + + Sbjct: 633 DLDFDLMISDLAPIDLLLQRIGRIWRHDR-VRPTGITEPLLYLIRPKFKDDLPDFDFIVE 691 Query: 697 EHIYSNVRVMWRTQQHIEELNG---ASLFFPDAYRQ---WLDSIYDDA--------EMDE 742 + IY ++ RT + L+G F RQ ++ +YD + + Sbjct: 692 KFIYERH-LLLRTWDVLNSLDGYLEPFKFIDSKTRQIDYLIEQVYDFSHPPLASLNSATQ 750 Query: 743 PEWVGNGMDKFESAECEKRFKARKVLQWAEE----YSLQDNDETILAVTRDGEMSLPLLP 798 +W + E+R + L + + L E VTR ++ ++ Sbjct: 751 DDWNSSQAKLESQIISEQRLARNRNLPHVNQQPEAWELTHRPENADLVTRLTPRTVTVVL 810 Query: 799 YVQTSSG 805 +T+ G Sbjct: 811 AQETARG 817 >UniRef50_C1DSH5 CRISPR-associated helicase Cas3, core n=3 Tax=Pseudomonadaceae RepID=C1DSH5_AZOVD Length = 901 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 224/856 (26%), Positives = 348/856 (40%), Gaps = 101/856 (11%) Query: 8 CHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQ-SVVLQNTFCRNEMLSKQRVKAW 66 W KS + G L+ H LDVAAVA+ ++ F L + Sbjct: 14 RALWAKSGEPGGHG-----LLAHMLDVAAVAETLLEREPPATHECFAAQFGLPESVFSRH 68 Query: 67 LLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDS 126 + LHD GK FQ K + PS R +H AG + Sbjct: 69 VAALAGLHDFGKAIPGFQAKWPAGRERDEAHGLGFAEPS---LRVTDHACAGAALLWRHL 125 Query: 127 LSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQ 186 ++ + + ++A+ HHG+ + R +PA A A Sbjct: 126 PAQGAEPGWI-------------MGVLQAIGAHHGYNPSVPEI---RTAVPALEAPGWAP 169 Query: 187 DKQA-REEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNED 245 +QA E + L + A ++P + LAG S+ADW+ S Sbjct: 170 ARQALFEAYWQALAPEGVPAAD----ELPLPAVAWLAGLTSVADWIASDPDWFP------ 219 Query: 246 APSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLD--------NGYQPRQLQ 297 ++L +F+ + A++ LE G ++ + G R LQ Sbjct: 220 PGEREDSLAGHFRQAGKLAAKALEEIGWSPHRALLREPATTDELLGRIVRREGVAARSLQ 279 Query: 298 VLVDAL---PVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAML 354 V D L P L ++EAP G GKTE A +L + ALPTQA NA+ Sbjct: 280 VEGDRLLSEARGPSLLLVEAPMGEGKTELAFLAHLRLQAANDHRGLYVALPTQAIGNALF 339 Query: 355 TRMEASASHLFSSP------------NLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQ 402 R ++ L HG + + Q ++ G + + Sbjct: 340 DRALTFLRGFDDRQPLDRQPLDRQPLDIQLVHGGAALDERVQRLRD----IHGGTDDSIA 395 Query: 403 CCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMN 462 W SQ ++ L GV T+DQ L + L VKH F+R G+ V+++DEVHAYD Y Sbjct: 396 SSAWFSQ-RRRPLLSPYGVGTVDQALFAALNVKHHFVRLWGLANRVVVLDEVHAYDVYTG 454 Query: 463 GLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGA 522 GL+E++L+ +G SV+L+SATLP +++ LL +G+ T+ V YP + G Sbjct: 455 GLIESLLRWLRALGSSVVLMSATLPEQRRNALLQAWGVATERVPEL-PYPRLLLADGRGL 513 Query: 523 QRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLER-MIAAANAGAQVCLICNLVDVAQ 581 + + P PI L + DL L + + G LI N V AQ Sbjct: 514 RATTFDSRP----------LPPIALESLDEDLDDLAACALRLLDGGGHGALIVNTVARAQ 563 Query: 582 VCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGK---RNVGRILVATQVV 638 Y+RL+ + +V + LFHARF ++R +E +V+ FG G R +L+ATQV Sbjct: 564 ELYRRLQPRLDEEVRLILFHARFPADERGMRERQVLEAFGNAGTDRPRPGRCLLIATQVA 623 Query: 639 EQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEH 698 EQSLD+DFD+LIT P DL+ QR GRLHRH R PA + L G + Sbjct: 624 EQSLDIDFDFLITDLAPVDLILQRAGRLHRHRRARVPAHAGARLFVAGLDPRRLPGLEKT 683 Query: 699 IYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMD------- 751 +Y ++ RT + G L P + + ++Y DA + + Sbjct: 684 VYEPY-LLGRTWALLSRETG--LRLPWDIDRLVQAVYGDAPLPDDLDAQVRARIEVEIHG 740 Query: 752 KFESAECEKRFKARKVL---------QWAEEYSLQDNDET--ILAVTRDGEMSLPLLPYV 800 ++ + E+R KA + + ++ + E + TR G+ ++ L+P Sbjct: 741 EYLARLKEERQKALNIAIDPSAAPQNAYLDKPRGNEEGEGPGLTKRTRLGDAAVALVPVY 800 Query: 801 QTSSGKQL-LDGQVYE 815 + G L DG+ ++ Sbjct: 801 RVPDGWSLRPDGEAFD 816 >UniRef50_B6XT60 Putative uncharacterized protein n=2 Tax=Bifidobacterium RepID=B6XT60_9BIFI Length = 1045 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 217/963 (22%), Positives = 348/963 (36%), Gaps = 151/963 (15%) Query: 1 MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVV--LQNTFCRNEML 58 +E WGK+++ + L H D AA+A WD V ++ R+ Sbjct: 12 IELSDRAKSLWGKTNR--VDDTEWLPLYVHMADSAAMAVRIWDTWVPYGTKSIISRDLGN 69 Query: 59 SKQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAG 118 + ++F +HDIGK FQ K + P SL Q G Sbjct: 70 DDDLARKLMIFLAGVHDIGKATPVFQAKP----ISFGPDAESLAWKPEQAGLPMIAGLRD 125 Query: 119 LYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPA 178 + L +FS + V V GHHG + +R Sbjct: 126 TSHPTHPIAGQVILERYFSLVHKWGERESRQYACV--VGGHHGTPPDKSKLESARLGKTE 183 Query: 179 SLASYAAQDKQAREEWISVLEALFLTPAGLSI---NDIPPDCSSLLAGFCSLADWLGSWT 235 S E + + + + + L G +ADW+ S + Sbjct: 184 SGLDSEVWTTTQNELIEFIAGTVGIGDEEWKLLSKKRFSAQSAVLATGLVIIADWIASNS 243 Query: 236 TTNTFL-------FNEDAPS-------DINALRTYFQDRQQDASRVLELSG------LVS 275 + F +++D P D + Q R + A ++L + S Sbjct: 244 DADMFPLVRVHPLWDDDEPFGMTERKYDDIQSWSGLQRRAERAWACVQLPHAWKPANIPS 303 Query: 276 NKRCYEGVHALLDNGYQPRQLQ---VLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLI 332 + + L G QPR +Q V V A GL +IEAP G GKTE ALA A L Sbjct: 304 SCQDLFSTRFRLPEGAQPRPVQEQAVRVARDTDARGLLIIEAPMGEGKTEAALAAAEILA 363 Query: 333 DQQIADSVIFALPTQATANAMLTRMEASASHLFS-----SPNLILAHGNSRFNHLFQSI- 386 + + ALPT AT +AM +R+ L S + LAHG ++ N FQ I Sbjct: 364 QRTGRGGICVALPTMATTDAMFSRVHRWLDALPSCDSTDEKTVWLAHGKAKLNDDFQGII 423 Query: 387 --KSRAITEQGQEEA-------------WVQCCQWLSQSNKKVFLGQIGVCTIDQVLISV 431 R + GQ++ W+ KK L VCT+DQVL+ Sbjct: 424 AASRRHFSSVGQDDTDEPYSRKHGEISPETVVSDWI-WGRKKGALANFLVCTVDQVLMGA 482 Query: 432 LPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQK 491 L +KH +R L + V+IVDE HAYD YM L+ L+ VILLSATLP Q+ Sbjct: 483 LQMKHVVLRQLAMANKVVIVDECHAYDAYMREYLKMALEWLGSTRTPVILLSATLPESQR 542 Query: 492 QKLLDTY---------------------------------------------GLHTDPVE 506 +++ Y + + Sbjct: 543 EEMAKAYLKGWRNSKLELPSEAKRGGIQELKRRQLAAKNEKVYVNEPKLVQERGISSVHK 602 Query: 507 NNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANA 566 +SAYP++ + + D+ + R I + D ++ + Sbjct: 603 VSSAYPVLTYTSDTEIKHMDVKPSGRSMNVRCQIVDDS--------DEALISLLDRLLED 654 Query: 567 GAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGK---- 622 G V +IC+ V AQ + L + ++ + L H+RF DR E + G Sbjct: 655 GGCVGVICDTVGRAQHAAKLLSDYFGSEY-VKLTHSRFMDIDRMSNEAELRQLLGPDSTV 713 Query: 623 -NGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRK----YRPAG 677 NG+R I+V TQV+EQSLD+DFD L+T P DL+ QRLGR+HRH R RP+ Sbjct: 714 GNGERPQRMIVVGTQVLEQSLDIDFDTLVTDIAPVDLIMQRLGRVHRHRRGNNECDRPSL 773 Query: 678 FEIPVATI-----LLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASL---FFPDAYRQ 729 I +G + + +V + + +E ++ P + Sbjct: 774 LREAACYIRGIAFWNDNGPEFAKGVDAVYDVASLMESLAVLELTGSSAFCTQCLPKDIAR 833 Query: 730 WLDSIYDDA---------EMDEPEWVGNGMDKFESAECEK----------RFKARKVLQW 770 + + Y + M + +K E + + R ++ W Sbjct: 834 TVRNAYGNDVRSLVPTAWNMQYDKGCEERANKQEKKRADAHSYLIQSVAVMNRKRSLVDW 893 Query: 771 -AEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALN 829 + + D+D+ A RD + ++ ++ + LL + + + ++ + ++ Sbjct: 894 FSPQIDETDDDKGQRA-VRDTQDTVEVMLLCKHDGEVCLLP-WIGDKRNGIERGAVIPVD 951 Query: 830 RVN 832 V Sbjct: 952 TVP 954 >UniRef50_D0WFD2 CRISPR-associated helicase Cas3 n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WFD2_9ACTN Length = 946 Score = 504 bits (1297), Expect = e-141, Method: Composition-based stats. Identities = 202/877 (23%), Positives = 338/877 (38%), Gaps = 111/877 (12%) Query: 31 CLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYKSAES 90 D +A W + + + LS ++ + + ++HDIGK FQYK + Sbjct: 1 MGDSGEIARLLWSKWLPRTVKKLIAQDLSDSAAESLVAWMASVHDIGKATPAFQYKVTDR 60 Query: 91 WLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWF 150 + + +H G + L D+ F A HP Sbjct: 61 AESVRETGLEI----PAGIDSKSHAFMG----------QVILEDWL-FDRAWSHP----N 101 Query: 151 PWVEAVTGHHGFILHSQD-QDKSRWEMPASLASYAAQDKQAREEWIS---VLEALFLTPA 206 + V GHHG S D R + + + E + VL F Sbjct: 102 IFSCVVGGHHGAPPDSSTILDNLRDSLLPKEVLGESTWTTVQIELLDYAFVLSGAFGHEG 161 Query: 207 GLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINA-LRTYFQDRQQDAS 265 L ++P LL ++DW+ S + + +D A R ++ A+ Sbjct: 162 ELKELELPQHTQVLLTALVIMSDWIASNADLLPLVSGIASTADFRARAREAWERLALPAA 221 Query: 266 RVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVA---PGLTVIEAPTGSGKTE 322 V L G + R + + + R Q+L + PGL +IEAP G+GKTE Sbjct: 222 WVPSLHGEPAEAR-FHARFDNIPEAARLRPAQILAVEAAESLEDPGLIIIEAPMGNGKTE 280 Query: 323 TALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSP-----NLILAHGNS 377 +L A L ++ + + + LPT AT+NAM +R+E SH+ + ++ L H S Sbjct: 281 ASLLCAEILAEKFGSGGIAYLLPTMATSNAMFSRVENWLSHMADADGSSRQSMQLLHSKS 340 Query: 378 RFNHLFQSIKSRAITEQGQE----------EAWVQCCQWLSQSNKKVFLGQIGVCTIDQV 427 N F S+++ T G E + + QW K+ L V T+DQ+ Sbjct: 341 ALNKDFASLRTWNHTWMGDERNQQRSKNPNDESIIAHQWFG-GRKRGLLASFVVGTVDQL 399 Query: 428 LISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLP 487 L++ L KH +R LG+ V+++DEVHAYD YM+ L+ V+ +LLSATLP Sbjct: 400 LMAALKAKHVQLRHLGLAGKVVVIDEVHAYDAYMSVYLDRVMTWLGAYRVPTVLLSATLP 459 Query: 488 MKQKQKLLDTYGLHTD----------------PVENNSAYPLINWRGVNGAQRFDLLAHP 531 +++++L+ Y AYPL+ G + Sbjct: 460 PQRRKQLIRAYRGKDARSTGRPSKRRLIDPPRRATGEPAYPLVTVSGRDLDSERYCDCEV 519 Query: 532 EQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELN 591 I +L + + G C++ + V AQ Y+ LK Sbjct: 520 ASRGTDVEISFLLDGD------DDLLATLRDRLSDGGCACVLRDTVSRAQETYEFLKTAM 573 Query: 592 NTQVDIDLFHARFTLNDRREKENRVISNFGKN-GKRNVGRILVATQVVEQSLDVDFDWLI 650 + ++ L H+RF DR + ++ G N +R ++V TQV+EQSLD+DFD++I Sbjct: 574 DA--EVRLVHSRFIAADRLSNDAELLKLLGPNASRRPRSLVVVGTQVIEQSLDIDFDFMI 631 Query: 651 TQHCPADLLFQRLGRLHRHHR----KYRPAGFEIPVATI-----LLPDGEGYGRHEHIYS 701 T P DLL QR+GRLHRH R R A I + + + Sbjct: 632 TDIAPIDLLLQRMGRLHRHQRGEGQSERSAKLRTAQCFITGSKDWSVEPPEFDKGIIAVY 691 Query: 702 NVRVMWRTQQHIEEL----NGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGM--DKFES 755 + ++ RT ++ G+ + P ++++Y+ E +++ +G+ D + Sbjct: 692 HPALLLRTILALKVRCDGAGGSRINLPHDIAGLVETVYEGLEPGSNDFLLDGLKDDAWRD 751 Query: 756 AECEKRFKARK--------------------------VLQWAEEYSLQDNDETILAVTRD 789 A + R+ ++ W ++ET A RD Sbjct: 752 ALLGAQDDLRQYRMSQESKASNWLLGKERTKPGKVFDLVGWLGNRFSLSDEETGRAAVRD 811 Query: 790 GEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEAL 826 + SL ++ +G + V E++Y AL Sbjct: 812 SQESLEVVALH-CDAGNLSVFPWVALQEGVEEKYTAL 847 >UniRef50_Q5YRB2 Putative uncharacterized protein n=1 Tax=Nocardia farcinica RepID=Q5YRB2_NOCFA Length = 914 Score = 502 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 210/874 (24%), Positives = 320/874 (36%), Gaps = 77/874 (8%) Query: 11 WGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQ--NTFCRNEMLSKQRVKAWLL 68 W KS + L+ H D VA WD+ + + + L+ Sbjct: 10 WAKSDR----EGGSLSLVRHLADSGEVAKLVWDRWLPTHTRQRISVGLPGGEADGRTLLV 65 Query: 69 FFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLS 128 + A HDIGK F + E ++ + + + H AG Sbjct: 66 WLAATHDIGKLTPAFACQVPELADAMHDRGLRM-PDALGDRKALPHSLAGEVTL------ 118 Query: 129 EQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDK 188 F E + HHG ++ + ++ + Sbjct: 119 -------LEFLTGLGWDREVAKTYAVVAGSHHGVPPTVREVRNAPARTTLFGEGQWSRSR 171 Query: 189 QAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPS 248 +++ + L + + SLL + DW+ S + + Sbjct: 172 DELLRFVTERTGAWELLERLRLIPLTVTQQSLLTAAVIVTDWIASNQDLFPLDEARVSST 231 Query: 249 DINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQV---LVDALPV 305 A+ EL S +R + + + PR LQ+ V + Sbjct: 232 AAPAVWELLGLPHPWQPSASELHDDPSQRRFFCDRFGWPPSIH-PRPLQLECLRVADVTP 290 Query: 306 APGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLF 365 PGL V+EAP G GKTE ALA A L + + ALPT AT++AM R+ A +L Sbjct: 291 VPGLMVVEAPMGEGKTEAALAAAEILAQRFGLGGIFVALPTMATSDAMFARVRKWAENLP 350 Query: 366 SSPNLI-LAHGNSRFNHLFQSIKSRAITEQGQE--EAWVQCCQWLSQSNKKVFLGQIGVC 422 P + LAHG + N F S+ R G + ++ V W KK L + V Sbjct: 351 VPPAAMFLAHGKAALNAEFTSLHRRGFVSIGTDCADSGVVAHAWFV--GKKGPLANVVVG 408 Query: 423 TIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILL 482 TIDQ+L + L +H +R L + V+++DEVHA D+YM+ L L+ A VILL Sbjct: 409 TIDQILRAALKTRHLMLRHLALANKVVVIDEVHAADSYMSTYLCRSLEWLAAYRVPVILL 468 Query: 483 SATLPMKQKQKLLDTYG-----LHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPR 537 SATLP Q++ L+ Y + + YP I L+ R Sbjct: 469 SATLPPSQREALVLAYARGYGTGDDEVCLTDHGYPAITHWP------NPELSTTVAASGR 522 Query: 538 FSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDI 597 E +AD L L ER+ A G ++CN V AQ Y L+ + ++ Sbjct: 523 SIAGIEIAHVADDLDVLA--ERVRQALADGGIAGVVCNTVARAQETYLALERAGFPEDEL 580 Query: 598 DLFHARFTLNDRREKENRVISNFGK---NGKRNVGRILVATQVVEQSLDVDFDWLITQHC 654 L H+RF + R E E R+ + G R ++V TQV+EQSLD+D D LIT Sbjct: 581 LLIHSRFVASHRAELEARLRAMLGPPDGGTVRPDRLVVVGTQVIEQSLDIDLDLLITDLA 640 Query: 655 PADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPD-----GEGYGRHEHIYSNVRVMWRT 709 P DLL QR+GRLHRH R RP P + D + + +Y R++ R Sbjct: 641 PMDLLLQRIGRLHRHDRPARPPKLVRPSCWVRGADWNEEPPQPVRGSQAVYGLARLL-RC 699 Query: 710 QQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGN---GMDKFESAECEKRFKARK 766 + A+L PD + Y + +W+ ++ +R KAR Sbjct: 700 AAVLRRR--AALTVPDDVPGLVADAYHEQLEVPTDWLAAYHLAEKQWHEHVDRQREKART 757 Query: 767 VL------------QWAEEYSLQDNDET-ILAVTRDGEMSLPLLPYVQTSSGKQLLD--- 810 L W D D A RD E ++ + + + L Sbjct: 758 YLLSAPYGDNRTLHGWVATGIPDDADGVGGQAQVRDAEDTIEAIVVQRCGDHVRALPQVP 817 Query: 811 ---GQVYEDLSHE--QQYEALALNRVNVPFTWKR 839 G + + LA + +P R Sbjct: 818 EIGGTTVPTDAEPPVWLAKKLAACTIRLPAMLTR 851 >UniRef50_B8IZA2 CRISPR-associated helicase Cas3 n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8IZA2_DESDA Length = 860 Score = 500 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 217/858 (25%), Positives = 343/858 (39%), Gaps = 91/858 (10%) Query: 10 YWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLF 69 +W K+ S G + L H +AV C Q Q + A + F Sbjct: 6 FWAKTYASNLPGISVLL---HGRFASAVGRCLVRAMFPPQ----------WQDLHAVVAF 52 Query: 70 FIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSE 129 +++HD+GK +FQ K L + R+ + A + LS+ Sbjct: 53 LLSIHDVGKISPQFQGKC------------LLWLEQNGLAREAANNAWPSFTTTHACLSQ 100 Query: 130 QSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQ 189 + L F + ES+ W V HHG ++ + P LA + D Sbjct: 101 EILDYF---WQQKGLLSESYSLWSAIVGAHHGKWAKAKPHHYGQV-SPPCLAPSPSVD-- 154 Query: 190 AREEWISVLEALFLTPAGLSINDIPPDCSSLLA--GFCSLADWLGSWTTTNTFLFNEDAP 247 E ++ + + A + + +SL A G LADW+ S Sbjct: 155 WLREELNFVAYQWEQHANTELPPVTGASASLYASAGLLVLADWIASDEHHFPANPTLAPI 214 Query: 248 SDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAP 307 +D + + A V+ G ++ G+ G P +QV P Sbjct: 215 AD--------EQIDRVAHDVVGSLGF-ASLEIRTGLSFEDIFGCSPYPMQVAAWCNITEP 265 Query: 308 GLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSS 367 G+ VIEAP G GKTE AL A+KL++Q A + F LPTQAT+N + R+ + + Sbjct: 266 GIYVIEAPMGMGKTEAALMAAYKLMEQGKARGLYFGLPTQATSNRIYERVLEFILRISPT 325 Query: 368 -PNLILAHGNSRFNHL-----FQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGV 421 + L HGNS Q + + +W S+++ L +GV Sbjct: 326 AQRVQLIHGNSWLLDDTLAMPEQQQLPDDSAADPKAGSGADPLRWFC-SSRRALLAPVGV 384 Query: 422 CTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVIL 481 T DQ +++ L VKH +R L + V+I+DEVH+YD Y +++ + + AD+G +VI+ Sbjct: 385 GTADQAMLAALAVKHFALRRLALLGKVVILDEVHSYDHYTRAIIQQLCRVLADLGSTVII 444 Query: 482 LSATLPMKQKQKLLDTYGL--HTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFS 539 LSATL + LL ++ E++ YP I+ R + + P PP + Sbjct: 445 LSATLSGSARSALLQSHSPVSSMGAEEDSLPYPCISGRAHDQD---TVQVIPCTPPPSHT 501 Query: 540 IQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELN---NTQVD 596 + D P + R I A +G QV +CN V AQ ++ ++ + Q D Sbjct: 502 VH------VDFQPLQGAISRTIDIAASGGQVLWVCNTVANAQETFRNIQAHAAVTDCQAD 555 Query: 597 IDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPA 656 + + HAR R E+E + GK G+R G ILV+TQ+VEQS+D+D D L T+ P Sbjct: 556 MGILHARLPFFMREERETEWMQRLGKKGQRQRGCILVSTQIVEQSVDLDADVLFTELAPT 615 Query: 657 DLLFQRLGRLHRHHRKYRPAGFEIPVATILLPD--------------GEGYGRHEHIYSN 702 D+L QR+GRL RH R+ RP P I+ + + G +Y Sbjct: 616 DMLLQRMGRLWRHTRRDRPVPH--PCMHIIAENFSLTDLLDMSAPAITKALGSKAKVYDP 673 Query: 703 VRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRF 762 ++ RT + + S+ PD R+++ + Y + E +F + K Sbjct: 674 F-ILLRTLEVWGK--AVSVTLPDDIRRFIYATYTEPEFLTEALQELYDAQFGKSAAMKMQ 730 Query: 763 KARKVLQWAEEYSLQDNDETILAVTRDGE--MSLPLLPYVQTSSGKQLLDGQVYEDLSHE 820 W L D A TR + ++ + LLDG V + Sbjct: 731 AQINTDIW----RLAGTDVEEYAPTRLSDHQEYGFVMYRSNVKNQITLLDGSVVNANDKD 786 Query: 821 Q---QYEALALNRVNVPF 835 L N V +P Sbjct: 787 FRKDTARKLHRNAVRIPD 804 >UniRef50_B0LU92 CRISPR-associated helicase Cas3 n=2 Tax=Streptomyces RepID=B0LU92_9ACTO Length = 1002 Score = 497 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 211/930 (22%), Positives = 328/930 (35%), Gaps = 136/930 (14%) Query: 11 WGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNT-FCRNEMLSKQRVKAWLLF 69 WGKS++ G +LL+ H LD AAVA+ WD + R + + Sbjct: 27 WGKSAERA--GGQTNLLLSHLLDTAAVAERLWDSFLAPSTRGLLDEVSGGPGRGRRLFAW 84 Query: 70 FIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPS-TQMCRKFNHGAAGLYWFNQDSLS 128 A+HD+GK FQY+ + A +GP+ R++ H A Y + Sbjct: 85 LCAVHDLGKATPAFQYQWEPGARAVRAAGLRWHGPTVANQKRRWRHEHASAYLLMR---- 140 Query: 129 EQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDK 188 GHHG R + Sbjct: 141 ---------VLRRVGWAERHVAWVWPLAAGHHGVFPEEDAVQPPRRGKGQLQGGADWEVA 191 Query: 189 QAREEWISVLEALFLTPAGLSINDIPPDCSSL-LAGFCSLADWLGSWTTTNTFLFNEDAP 247 QA +E F A + +P L ++G +ADW+ S L + Sbjct: 192 QAGLLERVTVELGFGGLAEVQPVAVPARAVQLHVSGLIVMADWIASDEKHFPGLPDMSQV 251 Query: 248 SDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPV-- 305 S A ++R A L L G G + R Q LV Sbjct: 252 SMKGA-----RERAGLAWTRLGLRGGWGALAGPGPEAFRERFGVEARPSQRLVMQAARDM 306 Query: 306 -APGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHL 364 PGL V+EAP G GKT+ AL A L + AD V +PTQAT++ M ++ A L Sbjct: 307 EGPGLLVVEAPMGEGKTKAALMAAEILAARFGADGVFVGMPTQATSDPMFGQVRAWLQAL 366 Query: 365 FSSPN----LILAHGNSRFNHLFQSIK---------------------------SRAITE 393 + + L HG FN ++ + Sbjct: 367 GRGDDLASQVALLHGKRMFNKEWRGLVEGRERVGGEFGFAGVDEFGCEGDVYGMGGQARG 426 Query: 394 QGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDE 453 G+ +W K+ L V T+DQ+L++ +H +R G+ V+++DE Sbjct: 427 VGERSGAGGPAEWF-LGAKRGLLCPFVVGTVDQLLLAATRSRHVMLRMAGLAGKVVVLDE 485 Query: 454 VHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTY--------GLHTDPV 505 VHA D YM+ L L+ G V+LLSATLP Q+++L++ Y L + + Sbjct: 486 VHAADVYMSQFLVEGLRWLGQAGVPVVLLSATLPPGQRRELVEAYVAGAGSREELRLEAL 545 Query: 506 ENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSI--------------QPEPICLADML 551 YP + + E P S+ A Sbjct: 546 PEPGGYPSVTSAWSAVEGPCVRVDSCEGWRPDLSVALAVCSEPVPGPRASRVQERQAQEE 605 Query: 552 PDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRRE 611 D+ +++ + A G ++ N V AQ Y L + ++ L H R R E Sbjct: 606 ADVAVVDLLRAQLEGGGCALVVRNTVARAQSLYSALAGVFGAG-EVMLLHGRLAAGARAE 664 Query: 612 KENRVISNFGKNGK-----RNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRL 666 + R + G +G R ++VATQ+ EQS DVD D L++ P DLL QR+GRL Sbjct: 665 RTERCLGLLGVSGPGVGEGRPRRLVVVATQLAEQSFDVDVDLLVSDVAPVDLLLQRIGRL 724 Query: 667 HRHHRKYRPAGFEIPVATIL--------------LPDGEGYGRHEHIYSNVRVMWRTQQH 712 HRH + RP G +P + + G + R + ++ RT Sbjct: 725 HRHGDRVRPPGLVVPQVFLTGLGGGLVEGADAGSVCGGPAFIRGSEVIYGRHLLLRTAAV 784 Query: 713 IEELNGASL-----------FFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKR 761 + + P + ++Y D E+ W + E +R Sbjct: 785 VADALRPGSECGSGSGGGVWQVPGGVPGLVAAVYGDEELVPAGWRDDAGAARVEWEERQR 844 Query: 762 FKARKVLQWAEEYSLQDNDETILA-------------------VTRDGEMSLPLLPYVQT 802 +A+ + + D + LA V RDGEM ++ V+ Sbjct: 845 ERAQSAVPFLLTRR-GDKEGVTLAGLHRVAVAASGGAEGGLDGVVRDGEMGEEVVLVVRE 903 Query: 803 SSGK--QLLDGQ---VYEDLSHEQQYEALA 827 G+ + L G+ V D++ E + LA Sbjct: 904 REGEVVRTLSGRALSVNGDVADELIDDVLA 933 >UniRef50_Q1EQS5 CRISPR-associated helicase n=2 Tax=Streptomyces RepID=Q1EQS5_STRKN Length = 990 Score = 492 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 209/916 (22%), Positives = 325/916 (35%), Gaps = 109/916 (11%) Query: 8 CHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVV--LQNTFCRNEMLSKQRVKA 65 +WGK + + ++ H LD AAV WD + + L ++ ++ Sbjct: 24 ARFWGKERELPHP----YPVVCHLLDTAAVFGVLWDVLLGAEVHERVSEALGLRVEQARS 79 Query: 66 WLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQD 125 L F+ LHD+GK FQ + ES+ L P + R F H A + Q Sbjct: 80 VLSFWAGLHDLGKITPPFQAQVPESFAGLRADAAYRFAPGAEKERAFRHEMATHWSLTQL 139 Query: 126 SLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFI-LHSQDQDKSRWEMPASLASYA 184 D A H + + GHHG ++ SR Sbjct: 140 LGEAGYPADGRLMRRAVSH------QVAQLLGGHHGSFGAVLLSKELSRASEYRPGLGEE 193 Query: 185 AQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTN-TFLFN 243 Q R + + + +P + + + G +ADWL S + Sbjct: 194 GWAAQRRAHFAELRRVTGADA--VPTQGLPAELAVSVTGLVVVADWLASQRGAIVPLMPP 251 Query: 244 EDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDAL 303 L ++ Q A ++ + L + E + + P LQ + Sbjct: 252 VGWQGRPEELDAHWSRTQAAAVGLVAKARLGRARFDAERFEEMFP--FSPNALQGDLAER 309 Query: 304 ------PVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRM 357 PGL ++ APTG GKTE AL A L A + FALPT ATA+AM R+ Sbjct: 310 LPRLVGERGPGLLLVTAPTGDGKTEAALYAASVLGRAANARGLYFALPTMATADAMFPRV 369 Query: 358 EASASHLFSSPN-LILAHGNSRFNHLFQSIKSRAITEQG----QEEAWVQCCQWLSQSNK 412 A+ L L H + + + + G + WL + +K Sbjct: 370 RDFAAEALEGERALTLLHSMAWLSPAYAQDEQAPEVSDGAVSADPATATEAGTWL-RGSK 428 Query: 413 KVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQ 472 + L +GV TIDQ L +VLP+++ +R G+ V +VDE HAY +M+ LL +L+ Sbjct: 429 RGLLAPLGVGTIDQTLAAVLPLRYNALRLFGLSDKVFVVDEAHAYGPWMHQLLSRLLEWL 488 Query: 473 ADVGGSVILLSATLPMKQKQKLLDTY---GLHTDPVENNSAYPLINWRGVNGAQRFDLLA 529 V+LLSATL + L+D Y +P AYP + + Sbjct: 489 GAFRAPVVLLSATLTGRTAASLVDAYRRGAGFLEPSAVEPAYPGWLFTDSRTGKISRPRT 548 Query: 530 HPEQLPPRFSIQPEPICLADML----------PDLTMLERMIAAANAGAQVCLICNLVDV 579 Q I P+ M + E + A G + C V Sbjct: 549 VTSQRARTLDIDLRPVAWDAMEGPAATPRTEGRRAALREVLRPVAEEGGTALVCCTTVAE 608 Query: 580 AQVCYQRL----KELNNTQVDIDLFHARFTLNDRREKENRVISNFGK------NGKRNVG 629 AQ ++ L EL + + L H+R+ R+ +GK Sbjct: 609 AQQTFRDLCTAFPELALREGGLRLLHSRYPAFARQRITADCEEAYGKLRGDLEAAPPRPA 668 Query: 630 RILVATQVVEQSLDVDFDWLITQHCPADLLFQ-----------RLGRLHRHHRKYRPAGF 678 ILVATQVVEQSLD DFD +++ P L Q + GR H + RP Sbjct: 669 SILVATQVVEQSLDFDFDVVVSDLAPVAQLLQRAGRGRRHARGKAGRPPWAHLEDRP--- 725 Query: 679 EIPVATILLP-DGEG---YGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSI 734 + +L P DG+G R + ++ RT + E + PD + +D++ Sbjct: 726 ---LLVVLEPVDGDGKTAVPRTWGAVYDAGLLRRTALLLAEQTRTGIAIPDGVQSLVDAV 782 Query: 735 YDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEY--------SLQDNDETILAV 786 Y + +D G+D E + R + AEE+ + D + + Sbjct: 783 YAEDFVD-------GLDAAARLELRRMDSERAAGEIAEEHLAGMVGICAPADVAGDLHKL 835 Query: 787 -------------TRDGEMSLPLLPYVQTSSGKQLLD-------GQVYEDLSHEQQYEAL 826 TR G S +L + G LD Q + Q+ + Sbjct: 836 SRQEAGVTEELLTTRLGADSGRVLCLYEQQDGALTLDDAGALPLPQGGKRGPSRQELVQI 895 Query: 827 ALNRVNVPFTWKRSFS 842 + VP +W R Sbjct: 896 MAHVAPVPGSWLRGAE 911 >UniRef50_C7MQD2 CRISPR-associated helicase Cas3 n=1 Tax=Saccharomonospora viridis DSM 43017 RepID=C7MQD2_SACVD Length = 832 Score = 489 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 210/848 (24%), Positives = 324/848 (38%), Gaps = 65/848 (7%) Query: 7 ICHYWGKSS--KSLTKGNDIHLLIYHCLDVAAVADCWWD--QSVVLQNTFCRNEMLSKQR 62 + WGK ++ + L+ H D AA A W+ + ++ ++ Sbjct: 1 MQAPWGKRRGLEAADGSPREYPLVCHLCDTAAAALVLWEDHTAPGVREWVANELDMTPHE 60 Query: 63 VKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWF 122 ++ + LHDIGK FQ + + ++ H A Sbjct: 61 AGRFIAYLAGLHDIGKTTPGFQCQDSTDKNSVD---------------TIRHEIASY--L 103 Query: 123 NQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLAS 182 +L E SF H E + GHHG + + +P Sbjct: 104 AVPTLIEHP-EKPASFISGIAHRIG------EILGGHHGVFPPVDRRTRKPLHVPELG-- 154 Query: 183 YAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLF 242 + AR + L A +P ++ L G +ADW+ S Sbjct: 155 -GPEWDTARRTIHTELRAHLNPTLPTC---LPQPVAAALTGLVIVADWIVSDARWI-LES 209 Query: 243 NEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDA 302 DAP I A + + + L L+ + + P Q ++ D Sbjct: 210 QWDAPIGIAARWEHTLNATRARVHQLGLAHPTPGPLDLARILGGPNRSPNPLQQSIIDDF 269 Query: 303 LPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASAS 362 P PGL I PTGSGKTETA A KL + LPTQAT N+M R A+ Sbjct: 270 HPTGPGLLTIATPTGSGKTETAWIAAHKLATATDRYGTLMCLPTQATTNSMWARTSATVD 329 Query: 363 HLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVC 422 + + LAH + F+ ++ + +WL+ K+ L V Sbjct: 330 N-----TVTLAHSMAVFHSPYRHYSTHDP----------DALRWLN-GRKRPMLSAHAVV 373 Query: 423 TIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILL 482 TIDQ+L + L KH +R + V+IVDEVHA D YM +L VL+ +G V+LL Sbjct: 374 TIDQLLAAGLTAKHNMVRQWALTGKVVIVDEVHACDIYMLTVLARVLEWLGRLGVPVVLL 433 Query: 483 SATLPMKQKQKLLDTY---GLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFS 539 SATLP ++L Y + P AYP W + G+ + + Sbjct: 434 SATLPGHVSRQLTAAYLTGAGCSSPNPRPVAYPGWVWHPITGSP-VEPRNRAQISRAHAR 492 Query: 540 IQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDL 599 + + + A G ++C+ VD AQ Y R+++ + + L Sbjct: 493 TARVTVTHYTGPVEAAAANAIQPVAKNGGCAAVVCSTVDTAQRIYIRIRDTYP-GMCVWL 551 Query: 600 FHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLL 659 H+RF R E E ++S FG G R G ++VAT V+EQSLDVDFD +I++ P LL Sbjct: 552 LHSRFPHAHRAEIEADIVSMFGPAGDRPDG-VVVATSVIEQSLDVDFDVMISELAPVALL 610 Query: 660 FQRLGRLHRHHRKYRPAGFEIPVATILLPDGE-GYGRHEHIYSNVRVMWRTQQHIEELNG 718 FQRLGR+ RH RPA P IL DG YG ++R + T+ + +G Sbjct: 611 FQRLGRVWRHD-NPRPAWATEPTLHILDRDGALPYGPAAIYRDSLRELRATRAALAG-HG 668 Query: 719 ASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQD 778 + P+ + +++ D + + L E + D Sbjct: 669 TLIRIPEDVSTLVQQVHNRDLDDLNDLQSQRERRDAGLANIVAIPNPHQLGHLETMTCPD 728 Query: 779 NDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQ---VYEDLSHEQQYEALALN-RVNVP 834 D+ +A R G ++ L+P G+ LD + Y ++ ALN + P Sbjct: 729 VDDATVAA-RLGMDTIRLIPAHIGIDGRYYLDPKHEIPYPQGRPPHRFVEAALNASITCP 787 Query: 835 FTWKRSFS 842 W R + Sbjct: 788 AHWVRDWP 795 >UniRef50_B5GA96 Helicase n=1 Tax=Streptomyces sp. SPB74 RepID=B5GA96_9ACTO Length = 963 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 204/805 (25%), Positives = 317/805 (39%), Gaps = 68/805 (8%) Query: 8 CHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQN--TFCRNEMLSKQRVKA 65 H WGK+ ++ + L+ H D AV WD + + + + ++ Sbjct: 17 RHLWGKADGL----DEAYPLVCHLFDTGAVVGALWDGWIGREQAGRLAASAGVEPDGFRS 72 Query: 66 WLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQD 125 L F+ ALHDIGK + FQ K + +L + + F+H +AG +W Sbjct: 73 LLCFWAALHDIGKISVPFQKKVTSLFDQLLAWESGARTTADEDSDSFHH-SAGSHWLLPA 131 Query: 126 SLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMP-ASLASYA 184 L+E H + + GHHG DQ R A Sbjct: 132 LLAEIGYPADRRARRHLGH------HVAQLLGGHHGIFHEEMDQRFLRNPRGLAPGLGGG 185 Query: 185 AQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTT-NTFLFN 243 ++QAR + L P +P + + ++ G LADWL S + + + Sbjct: 186 FWEEQARRHVRAALRVT--QPVAPLAEMLPAETAVIVCGLIVLADWLASQADFIKSRMPD 243 Query: 244 EDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLV--- 300 + +AL +++ A VL +GL ++ ++P LQ + Sbjct: 244 VSWLATESALDEHWRSAVAAAPAVLAEAGL--RPAAFKDASFAEMFAFEPNDLQSSLLSG 301 Query: 301 -DALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEA 359 PG+ ++ APTG GKTE ALA A L A + LPT AT +A R+ A Sbjct: 302 LPDELTGPGMILLTAPTGDGKTEGALAAAVGLARASGATGLGVVLPTMATTDAAHRRVAA 361 Query: 360 SASHLFSSP-NLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQ 418 + F+ + H + + + + A T+ + L Sbjct: 362 FCAKAFAQDGAVTKVHSMAWLSRDAEVDAATAGTDATMGARADVAAPAWLSGRYRPHLAP 421 Query: 419 IGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGS 478 V TIDQVL +VLPV++ +R L + VL++DE HAY +M+ LL +L+ Sbjct: 422 AFVATIDQVLSAVLPVRYNVLRHLAVSGKVLVIDEAHAYGPWMHALLLRLLEWLGAHRVP 481 Query: 479 VILLSATLPMKQKQKLLDTYGLHT-----DPVENNSAYPLINWRGVNGAQRFDLLAHPEQ 533 V+++SATL + LL Y + P ++ A P WR V R H Sbjct: 482 VVVMSATLAGETASSLLRAYRRGSAPGLPAPADDECAVPYPGWRFVAADGRIG-APHSFT 540 Query: 534 LPPRFSIQPE----PICLADMLPDLTMLERMIA-AANAGAQVCLICNLVDVAQVCYQRLK 588 P R ++Q P L L +++ G ++C V AQ + L+ Sbjct: 541 TPRRHTLQIRTHAVPFADDPSAARLAKLRKLLEPVFRDGGNALVVCTTVADAQDTTEALR 600 Query: 589 ELNNTQ-------VDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGR-------ILVA 634 E Q V + H+RF +DR R +++G R+ R ILVA Sbjct: 601 EYAEEQQGDRPDPVPVATLHSRFAAHDRFRLSARCEADYGPRRPRDGSRTARPTASILVA 660 Query: 635 TQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRH-------HRKYRPAG---------- 677 TQVVEQSLD+DFD LIT H P LL QR GR RH H +RP+ Sbjct: 661 TQVVEQSLDLDFDMLITDHAPLALLLQRAGRCCRHAMLGDDPHAAHRPSWWSAHSTGGLT 720 Query: 678 -FEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYD 736 I V ++ G G +Y + ++ RT+ + G L P+ + +D +Y Sbjct: 721 EVRIEVLDLVGKKGGFPGAARSVYGDGPLL-RTRNLLAARAGTPLRVPEDVQGAIDDVYA 779 Query: 737 DAEMDEPEWVGNGMDKFESAECEKR 761 D D ++ A+ E + Sbjct: 780 DDFSDRLALTAAATERVGIADRESK 804 >UniRef50_A8M400 CRISPR-associated helicase Cas3 n=1 Tax=Salinispora arenicola CNS-205 RepID=A8M400_SALAI Length = 986 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 215/962 (22%), Positives = 354/962 (36%), Gaps = 113/962 (11%) Query: 11 WGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVL--QNTFCRNEMLSKQRVKAWLL 68 WGK+++ +G L H D A VA WD + + + + + + Sbjct: 15 WGKTNRD--RGLVWLPLFRHLADSADVAGLLWDVWLPVTVRQRIAGSFPGGFDDGRVLVR 72 Query: 69 FFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLS 128 + +HDIGK F ++ + + + + HG AG Sbjct: 73 WLAGVHDIGKATPAFTWQVGPLREAMREHGFTFDRQVEADRGRAPHGTAG---------- 122 Query: 129 EQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDK 188 + L D+ + + V V GHHG D D + L Sbjct: 123 QIVLTDWLTGRHGWDRASAGGYAVV--VGGHHGVPP--TDADLTEIRARPYLLGAGGIWP 178 Query: 189 QAREE---WISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNED 245 ++E W++ A A +P LL +ADW+ S + F ++ Sbjct: 179 AVQDELLGWLTRRVAATDRLAVWREVILPQPVQVLLTAIVIVADWIASNEQFFPYGFRQE 238 Query: 246 APSDINALRTYFQDRQQDA-SRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALP 304 SD L+ +++ R ++ +G+ + + + + G QP +Q V Sbjct: 239 DASDR--LQQAWEELDLPTPWRAVDTTGVDAAR--FLAQRFKMPPGAQPYPVQAAVLEQA 294 Query: 305 VA---PGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASA 361 A PGL ++EAP G GKTE ALA L + A ALPT+AT++AM +R+ Sbjct: 295 RAMPLPGLLIVEAPMGEGKTEAALAAVEVLAGRSGAGGCFVALPTRATSDAMFSRVLGWL 354 Query: 362 SHLFSSP------NLILAHGNSRFNHLFQSIKSRAITEQ---GQEEAWVQCCQWLSQSNK 412 S L + LAHG + N + + + + V WL+ K Sbjct: 355 SRLPDADVGRGAREAALAHGKAILNDEYSRLYRGMLPSAIGVDEGGTAVAAHGWLA-GRK 413 Query: 413 KVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQ 472 + L V TIDQ+L + L +H +R LG+ V++VDE HAYD YM+ L+ L+ Sbjct: 414 RKMLSSFVVGTIDQLLFAALQARHVALRHLGLAGKVVVVDEAHAYDVYMSQYLDRALEWL 473 Query: 473 ADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPE 532 G V++LSATLP ++ ++ Y + + G + A D + E Sbjct: 474 GAHGVPVVVLSATLPAHRRADMMQAYDVGRFGPRRGARRRRRFRAGSDEATDDDQVLRDE 533 Query: 533 QLPPRFSI----------------QPEPICLADMLPDLTML-ERMIAAANAGAQVCLICN 575 + P S+ + + L DL L +R+ G V ++ N Sbjct: 534 RRYPLLSVSGVDRVPTTVGCAASGRSFDVRLERSDDDLAALADRLRTDLTDGGCVLVVRN 593 Query: 576 LVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGK-------NGKRNV 628 V L+ L ++ + + H+RF DR K+ + FG R Sbjct: 594 TVARVLETADELRRLLGPKIPVSVAHSRFMAADRAAKDTWLRDTFGPPEHLTEWGRARPA 653 Query: 629 GRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLP 688 ++VA+QV EQSLD+DFD L+T P DL+ QRLGRLHRH R RP P + Sbjct: 654 CHVVVASQVAEQSLDIDFDLLVTDLAPVDLILQRLGRLHRHRRAVRPGRLAQPRCLVTGV 713 Query: 689 D-----GEGYGRHEHIYSNVRVMWRTQQHIEELNG-ASLFFPDAYRQWLDSIYDDAEMDE 742 D +Y + ++ + L+G L+ P + + Y + Sbjct: 714 DWATVPPAPVPGSVTVYQHHALLRAAAVLLPYLDGDRPLYLPQDIAPLVQTAYGRGSVGP 773 Query: 743 PEWVGNGMDKFESAECEKRFKARKVLQWAEEY--------------SLQDNDET------ 782 P W + A+ ++ + S+ D++ T Sbjct: 774 PGWQSTLAEAAVQADARAEVARKRADTFRVGPVQAPGVSLVGWLDASVGDSEATNGNEWR 833 Query: 783 ILAVTR-DGEMSLPLLPYVQTSSG---KQLLD-GQVYEDLSHEQQYEALALNRVNVPFTW 837 A R DG +L +L V+ LD G E + + ++A + Sbjct: 834 GRAHVRDDGAEALEVLILVRRGEKLVTPPWLDQGGDVEVPTDFEPSRSVARTMLRCALPL 893 Query: 838 KRSFSEVVDEDGLL-WLEGKQNLDGWVWQGN------------------SIVITYTGDEG 878 ++ + D ++ LE + W V+TY D G Sbjct: 894 PQALTAHGGVDRIIAELERRNTFPAWEKDRLLGGELILDLDEQGRSRLTDFVLTYDRDTG 953 Query: 879 MT 880 + Sbjct: 954 LR 955 >UniRef50_D1Y491 Superfamily II DNA and RNA helicase n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y491_9BACT Length = 910 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 223/847 (26%), Positives = 332/847 (39%), Gaps = 89/847 (10%) Query: 11 WGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLS-KQRVKAWLLF 69 WGK + L+ H DVAAV + D ++ Q F R + ++ L Sbjct: 10 WGKFD---VESGRKQPLVAHLTDVAAVFEQIMDGAL-FQRHFQRVLGRPLSETLRERLCV 65 Query: 70 FIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNH--GAAGLYWFNQDSL 127 HD GK +FQ K E KL P R NH A L Sbjct: 66 LALWHDYGKISPKFQLKYREKIEKLTPK------------RSINHIDTAFNLSSIRYKGK 113 Query: 128 SEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQD-------KSRWEMPASL 180 L D F++ + HHG + + D + WE +L Sbjct: 114 IWNELLDVMHFWENEDQKRILHDYLTWVILAHHGAVPTQERCDMAQDNSSRKCWERGVNL 173 Query: 181 ASYAAQDKQAR--EEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTN 238 A + A + W A F GL P L AG LADW+ S + Sbjct: 174 DPQKALGELAALSQRWY---PAAFAAGGGLPEE---PCFQHLFAGTLMLADWIASDRSLF 227 Query: 239 TFLFNEDA---PSDINALRTYFQDRQQDASRVLE-LSGLVSNKRCYEGVHALLDNGYQPR 294 + DA ++ A +VL L + +KR G+ P Sbjct: 228 PYCGECDARGEQRPSPEEEDSLSYSRRQAEKVLASLVWTLDDKRPDRAPDFAAQFGFSPN 287 Query: 295 QLQVLVDALPVAP--GLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANA 352 +Q VD L ++P GL ++EA TGSGKTE AL +L+ D + FA P + A Sbjct: 288 GIQQAVDKLVLSPDGGLYILEAETGSGKTEAALRLYTRLLAAGYVDGLYFANPLRFAATQ 347 Query: 353 MLTRMEASASHLFSSPNLIL---AHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQ 409 + RM ++ F + + G R N + E E + W ++ Sbjct: 348 LFERMVKFSASSFGQEQIPVTLAVPGYLRVND--REGLRVGRFEVDWREVNDRAVGWYAE 405 Query: 410 SNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVL 469 K+ I TIDQ L++ L V H +R + RS+L+VDEVH+ D YM+ L+ ++ Sbjct: 406 QPKRFLASPIASGTIDQALLAGLRVPHAHMRAAALQRSLLVVDEVHSSDAYMSALICGLI 465 Query: 470 KAQADVGGSVILLSATLPMKQKQKLLDTY---GLHTDPVENNSAYPLINWRGV-----NG 521 + VGG V+L+SATL + ++ L + G PL V Sbjct: 466 ELFRRVGGHVLLMSATLGSESTERYLKVWNENGPQRPEQTETERLPLTEAVKVPYPLLTS 525 Query: 522 AQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQ 581 + L A +Q EPI + + G V ++ N V A+ Sbjct: 526 SAEPPLTAASPSRGKSVRMQREPIQQDPQAVAQLATQNLAPFDEKGPCVLILRNSVRQAR 585 Query: 582 VCYQRLKELNNTQVDI------DLFHARFTLNDRREKENRVISNFGKNGKRN----VGRI 631 ++ L+++ + L H+R+ DRR + V FGK + Sbjct: 586 RTFRALRKILPAEKIFSVNEIPTLHHSRYAPEDRRLLDREVGRRFGKEAVPPDQLRDCCV 645 Query: 632 LVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGE 691 LVATQ +EQSLDVDFD +IT CPAD++ QR+GRL RH R+ RPAGFE P +LLPD + Sbjct: 646 LVATQTLEQSLDVDFDLIITDLCPADVMLQRIGRLFRHQRR-RPAGFERPRCVVLLPDAD 704 Query: 692 ------------GYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAE 739 GYG E Y N+ + T + +EE +L P+ R +++ Sbjct: 705 CGWLLGAEARSYGYG-TERAYVNLPSLAATWRLLEENEMWNL--PEQNRFFVEQSTHPEA 761 Query: 740 MDE------PEWVGNGMDKFESAECEKRFKARKV-LQWAEEY---SLQDNDETILAVTRD 789 + E +++ E + + + AR L+W E + + E TR Sbjct: 762 LRRLVNGLGAEKWQRALNEVEGLKLAQGWIARTARLRWDEAFKDVKIACGKEMERIATRL 821 Query: 790 GEMSLPL 796 G M L + Sbjct: 822 GVMDLSV 828 >UniRef50_B4S8Q3 CRISPR-associated helicase Cas3 n=3 Tax=Bacteria RepID=B4S8Q3_PROA2 Length = 860 Score = 454 bits (1167), Expect = e-126, Method: Composition-based stats. Identities = 202/803 (25%), Positives = 326/803 (40%), Gaps = 122/803 (15%) Query: 27 LIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYK 86 ++ HC V VA + V + + A+HDIGK FQ K Sbjct: 43 VLDHCSIVGEVARELLSRMPVFLRSALFPDGTE---------LVAAIHDIGKVSPSFQEK 93 Query: 87 SAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLS------EQSLGDFFSFFD 140 G G W D LS E++ G Sbjct: 94 -------------------------IYRGTDGYIWNTLDGLSFSNPEHEKNWGGHAGVSM 128 Query: 141 AAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEA 200 AA E + HHG+ + ++ REE + +L+ Sbjct: 129 AAARARRIGKYIPEIIGQHHGYSPELNGL------VAEDEVFGGNAWQKMREELLCILKD 182 Query: 201 LFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDR 260 N + + +AG ++ADW+GS + F + D + Sbjct: 183 SLKKEFPAIENALQ---AKAIAGLTTVADWIGSGS----FFDDPD------------EQW 223 Query: 261 QQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGK 320 ++ +G V +G+ ++PR++Q L+ PG+ ++EAP G GK Sbjct: 224 LPLIKHAVDSAGFV-QPEIIKGLGFSEIFSFRPREIQQLLIEQATQPGVYILEAPMGIGK 282 Query: 321 TETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNL----ILAHGN 376 TE AL A+ +I A + FALPTQ T+N + R+ + + + +L H N Sbjct: 283 TEAALYAAYSIIAAGGATGLYFALPTQLTSNRIHDRVNDFLKKILAPDCIHRQALLLHSN 342 Query: 377 SRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKH 436 + E W + S K+ L V TIDQ L++V+ VKH Sbjct: 343 AWLK------------EIEMGADGGPGGNWFN-SGKRGILAPFAVGTIDQALMAVMNVKH 389 Query: 437 RFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLD 496 F+R G+ V+I+DEVH+YD Y +L+ +++A + +VI+LSATL +++ +L Sbjct: 390 GFVRTFGLAGKVVILDEVHSYDAYTGTILDKLVEALRKLQCTVIILSATLTKERRMNILQ 449 Query: 497 TYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTM 556 PV + S YPLI +G + A +P + + + D+ Sbjct: 450 ------QPVHDIS-YPLITASQNHGESVIETTA---VVPGKTVVSIQSSSYFDL-----A 494 Query: 557 LERMIAAANAGAQVCLICNLVDVAQVCYQRLKEL-NNTQVDIDLFHARFTLNDRREKENR 615 +E + A G QV I N V AQ + L +++ L H+RF DR E Sbjct: 495 IEEALTRAEGGQQVLWIENTVAEAQNSFSILAARSAGMEIECGLLHSRFIKADRERNEEY 554 Query: 616 VISNFGK---NGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRK 672 ++ +GK +R GRILV TQV+EQSLD+D D+L+T+ CP D+L QR+GRL RH Sbjct: 555 WVTRYGKGCDELRRQSGRILVGTQVLEQSLDIDADFLVTKICPTDMLLQRIGRLWRHGDT 614 Query: 673 YRPAGFEIPVATI-------LLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPD 725 +RP G V + LL + +G ++YS V+ RT +L A + P+ Sbjct: 615 FRPVGAVCEVLILKPEFHSALLNPEKEFGPTANVYSPY-VLLRTLVVWNDL--ADIVLPE 671 Query: 726 AYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEE-YSLQDNDETIL 784 R +++ Y M+ E K + + + + + + +E +L ++ Sbjct: 672 QIRSLIEATY----MEIEEHPMMLKYKAKLQQEKAKLELLALGGVSEGTKTLPESK---- 723 Query: 785 AVTRDGE-MSLPLLPYVQTSSGK 806 A TR E S+ +L + Sbjct: 724 ASTRYSEQESVEVLLLRSFLFDR 746 >UniRef50_Q6NEQ4 Putative helicase n=1 Tax=Corynebacterium diphtheriae RepID=Q6NEQ4_CORDI Length = 876 Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 210/880 (23%), Positives = 349/880 (39%), Gaps = 70/880 (7%) Query: 1 MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVV--LQNTFCRNEML 58 M P + + W K + L+ H LD AAVA WD + L+ F Sbjct: 1 MNPHEEL---WAKQKGLAKP----YPLLAHLLDSAAVAGALWDHWLRQDLRQMFIEELG- 52 Query: 59 SKQRVKAWLLFFIALHDIGKFDIRFQYKSA---ESWLKLNPATPSLNGPSTQMCRKFNHG 115 + + F + HDIGK FQY+ A E W + A + + Sbjct: 53 --SNAREIIQFVVGSHDIGKATPLFQYQKAQKGEVWDSIRYAIDRTGRYQKPLPSSYLVK 110 Query: 116 AAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWE 175 + S S + + E+W A+ GHHG + R + Sbjct: 111 KTSGGPNRHEQWS--SFASKNEYLKPSAAAKENWIGL--AIGGHHGRF---EPVGYGRHQ 163 Query: 176 MPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWT 235 A+ + A+++ + LE +++ P+ + +L+G LAD + S Sbjct: 164 RKAAEDLAKSGWSAAQQDLLRALEKASGITRASLPSELSPELTLVLSGLTILADRISSTE 223 Query: 236 TT--NTFLFNEDAPSDINALRTYFQDRQQDASR-VLELSGLVSNKRCYEGVHALLDNGYQ 292 + +D + + + R+ D+ + V + G+ +E + GY Sbjct: 224 SFVITGARMIDDGTLHLATPIDWLKTRKLDSEKHVAKTVGIYHGWNNHESAIHSILKGYD 283 Query: 293 PRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANA 352 PR LQ + AL GL + APTG+GKTE A+ L + D +IF LPTQAT+NA Sbjct: 284 PRPLQTI--ALQNQVGLLNLMAPTGNGKTEAAI-LRHSLKEN---DRLIFLLPTQATSNA 337 Query: 353 MLTRMEASASHLFSSPNLI-LAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCC------- 404 ++ R++ S +PN+ LAH + +Q+ S + + Sbjct: 338 IMRRVQGIYSD---TPNVAALAHSLASVEDFYQTPLSVFDDHYDPSKEQFESSMSGGLYP 394 Query: 405 QWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGL 464 S L I + T+DQ L + LP K +R L + + +++DEVH D Y L Sbjct: 395 SSFVCSGAARLLAPICIGTVDQALATALPGKWIHLRILALANAHIVIDEVHTLDHYQTAL 454 Query: 465 LEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQR 524 LE +L A + + L+AT+P Q+ KLL YG D + +P V Q Sbjct: 455 LENILPILAKLKTKITFLTATMPSWQRTKLLTAYGGE-DLQIPPTVFPAAE--TVLPGQF 511 Query: 525 FDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCY 584 L + F+++ ++ + A++ LICN V AQ Sbjct: 512 NRTLIDSDSTTIDFTMEETSYDH--LVESHVKWHQTTRLNAPHARIGLICNTVKRAQEIA 569 Query: 585 QRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDV 644 L++ N+ I L H+R T RR + S G NG R + V TQ +E SLD+ Sbjct: 570 AALEKTND---RIVLLHSRMTTEHRRRSAELLESLLGPNGNRKTITV-VGTQAIEASLDI 625 Query: 645 DFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEI---PVATILLPDGEGYGRHEHIYS 701 D D L T+ CPA L QR GR+ R + YR + P++ + + + E + ++ + Sbjct: 626 DLDILRTELCPAPSLVQRAGRVWRRNDPYRSSRITADHKPISVVFIAEAEDWQVLPYLRA 685 Query: 702 NVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDD-----AEMDEPEWVGNGMDKFESA 756 RTQ+ +E+ N +F P ++++D+ D +EMD G+ ++ Sbjct: 686 ET---SRTQRWLEKHN--QMFLPQMAQEFIDAATVDLDTATSEMDLDALALMGIHLMKAD 740 Query: 757 ECEKRFKA-RKVLQWAEEYSLQDNDETI-LAVTRDGEMSLPLLPYVQTSSGKQLLDGQVY 814 + R + +++L + I A TR E L + + + G + Sbjct: 741 GAKARIQDVLNSDSKVSDFALLTSKNEIDEAQTRLIEEG-THLRIILGDENESIPGGWKH 799 Query: 815 EDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWLE 854 S + A +R ++ S +V E L Sbjct: 800 GLSSLLKLK---ASDRESLRTALLASIPLLVSEKQKQLLY 836 >UniRef50_B8FDH5 CRISPR-associated helicase Cas3 n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FDH5_DESAA Length = 851 Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 214/842 (25%), Positives = 331/842 (39%), Gaps = 121/842 (14%) Query: 30 HCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYKSAE 89 HC V VA W + + + + A+HDIGK FQ K Sbjct: 41 HCKIVGMVAREWMQRQLEW--LVQKLFPCGSE-------LIAAIHDIGKISPGFQEKIYR 91 Query: 90 SWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESW 149 S + P L P ++++G F+ AA + Sbjct: 92 SLDMV----PGLAAPD----------------------LDKNVGYHFTVSQAAARDLGRY 125 Query: 150 FPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLS 209 P E V HHG S P + R + L F + Sbjct: 126 VP--EIVGRHHGISPASPGY-------PDDEIYGGPTWQAERMNTVKRLREYFQSSWPEV 176 Query: 210 INDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLE 269 ++DI D +L+G ++ADW+GS DAP + + ++ + ++ L+ Sbjct: 177 VSDIHAD---VLSGLTTVADWIGSALDI-----CPDAPQGLPSD----EELSRMTAKALD 224 Query: 270 LSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAW 329 +G + R G+ + P LQ + +PG+ V+EAP G GKTE AL A+ Sbjct: 225 DAGFIR-PRINSGLTFKDIFSFSPYSLQAEMAQAVSSPGVYVLEAPMGMGKTEAALFAAY 283 Query: 330 KLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSS----PNLILAHGNSRFNHLFQS 385 K +++ A V FALPTQ T++ M RM + N +L H + Sbjct: 284 KALEENRATGVYFALPTQLTSDKMHERMNKFLDVILDQNCPHKNALLLHSAAWL------ 337 Query: 386 IKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIG 445 ++ + E G+ + W K+ L V T+DQ L++ + VKH F+R + Sbjct: 338 -RATEMGEDGRPDKS-----WF-DYRKRGLLAPFAVGTVDQALMAAMNVKHGFVRTFALA 390 Query: 446 RSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPV 505 +I+DEVH+YD Y +L+ +++A ++ +VI+LSATL ++ +L+ Y P Sbjct: 391 GKCVILDEVHSYDAYTGVILDRLVQALREIHCTVIILSATLDTTRRAELI--YSPGETPA 448 Query: 506 ENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAAN 565 + YPLI +G + E+ I P D LE I A Sbjct: 449 SVDDVYPLITAHPNSGPPQAIASPAVEEPEILTRIHP---------DDEEALEEAIDRAQ 499 Query: 566 AGAQVCLICNLVDVAQVCYQRL-KELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNG 624 G QV I N VD A+ +QRL ++ L H+RF DR E+ FGK G Sbjct: 500 QGQQVLWIENTVDGAREVFQRLGARTAGLGIESGLIHSRFLKVDRETNESYWSGVFGKTG 559 Query: 625 KRNV---GRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIP 681 + GRILV TQV+EQSLD+D D+L+++ CP D++ QRLGRL RH RP G Sbjct: 560 REKRGEQGRILVGTQVLEQSLDIDGDFLVSRLCPTDMILQRLGRLWRHDINVRPKGARR- 618 Query: 682 VATILLP-------DGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSI 734 A IL P D + G+ +Y+ V+ R+ E+ L R + + Sbjct: 619 EAWILGPALEAAQADRQSMGKSAVVYAPY-VLCRSLDVWEDQPQFKLTGVK-IRALMAAT 676 Query: 735 YDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSL 794 Y + G E E+ L A TR E+ + Sbjct: 677 YSHRD-------DQGSMAAYKQELERVKDKLSRLARTGLSRSGKTLSETRAQTRYSEIEI 729 Query: 795 PLLPY----VQTSSGKQL-----------LDGQVYEDLSHEQQYEALALNRVNVPFTWKR 839 + + +G +L D ++ + + + LN V VP Sbjct: 730 TDVLLIKSKIHDRNGTRLELPDGTSLVLSPDRRLRDKAYWRKAAARIQLNTVTVPEKLAP 789 Query: 840 SF 841 +F Sbjct: 790 AF 791 >UniRef50_C2GEZ0 Helicase n=1 Tax=Corynebacterium glucuronolyticum ATCC 51866 RepID=C2GEZ0_9CORY Length = 894 Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 200/917 (21%), Positives = 335/917 (36%), Gaps = 68/917 (7%) Query: 7 ICHYWGKS-SKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKA 65 W K+ +K+ G ++ L+ H LD AAVA + + E L + V Sbjct: 8 YLELWAKTINKTGNNGASLYPLLPHLLDTAAVARALYTHWLRPGLQDLVQEQLGPRAVD- 66 Query: 66 WLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQD 125 + + +HD GK + FQ + A L Q RK + L F +D Sbjct: 67 VVSWICGIHDCGKANPIFQGQLANKK----AEEADLWADVRQNIRKSGRCSFDLSDFVRD 122 Query: 126 SLSEQSL---GDFFSFFDAAPHPYESW--FPWVEA-VTGHHGFI-----LHSQDQDKSRW 174 S ++L + F + + ++ W E GHHG+ ++D+D + Sbjct: 123 QCSRRALRRHEQVSALFLSGWETFNTFGEEKWAEIPALGHHGYFDLPFAAPNRDEDHLKH 182 Query: 175 EMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGS- 233 L D Q W + AL L+ L I + P S LL+G LAD + S Sbjct: 183 AFREDLDRLGWTDAQCSLNW-HLQRALHLSADDLDI-ECSPTVSVLLSGLTVLADRIASQ 240 Query: 234 --WTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVL-ELSGLVSNKRCYEGVHALLDNG 290 W L + L + + A + E G+ + E A + Sbjct: 241 DSWIAETKRLEETGQLTFTEPLDRWVDTQADRAVDAVDETIGIYRGWKSEEDARADILGS 300 Query: 291 YQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATA 350 + PR Q + AL GL I APTGSGKTE A L + ++F LPT AT Sbjct: 301 FTPRDAQAV--ALTCGEGLVTIMAPTGSGKTEAAF-----LRHSTRDERLVFLLPTMATT 353 Query: 351 NAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQS 410 NA++ R + + + LAH ++ + + S E E + Sbjct: 354 NALMKRTQKVFRRQRNVAS--LAHSSATLEDFYTNSVSVFDDECSGSETGGLFPTSFVRK 411 Query: 411 NKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLK 470 + L + V T+DQ L + LP+K + L + + ++VDEVH D Y L+ VL Sbjct: 412 GLERLLASVTVATVDQALKASLPIKWVHLLLLALANAHVVVDEVHTMDPYQGEFLKNVLY 471 Query: 471 AQADVGGSVILLSATLPMKQKQKLLDTY--GLHTDPVENNSAYPLINWRGVNGAQRFDLL 528 V L+AT P Y G + + ++P + G AQ Sbjct: 472 WLGKTRARVTFLTATFPATMMNDFTKAYDAGAGREVPPTDVSFPSL-IDGSGAAQELSCG 530 Query: 529 AHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLK 588 ++ Q E ++ R A++ +ICN V Q L+ Sbjct: 531 SY------NVGFQLEHADKQRIVDKHVEWARNQRNLYPDARIGIICNQVARCQEIASMLR 584 Query: 589 ELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDW 648 ++ + H+ T R + N++ G +G G +V TQ +E SLD+D D Sbjct: 585 ---GEGHEVIVLHSSLTALHRSQVSNQLEKLLGPDGT-GWGITVVGTQAIEASLDIDLDL 640 Query: 649 LITQHCPADLLFQRLGRLHRH---HRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRV 705 + CP+ + QR GRL R R R G + IL+P Y +H + Sbjct: 641 MSIDLCPSTSILQRAGRLWRRDDPERVNRVPGASLKTIHILVPH--DYASGDHYPYQPAL 698 Query: 706 MWRTQQHIEELNGASLFFPDAYRQWLDSIY---DDAEMDEPEWVGNGMDKFESAECEKRF 762 + RT+Q +E + + + PD ++++D+ + + + E V + ++ ++ Sbjct: 699 LTRTRQWLEN-HPSPIAVPDDCQEFVDACTVRLSELDDETDEDVSHDLEYHADVAYRRQT 757 Query: 763 KARKVLQWAEEYSLQDNDETILAVT----RDGEMSLPLLPYVQTSSGKQLLDGQVYEDLS 818 ++++ + I ++ R L P + +Q++ + Sbjct: 758 ALNRIVKIPDVLEPDQYLSRIGLLSGGPERLDLDFADLTPRLIDRPTRQVITIDATGETP 817 Query: 819 HEQQYEAL--------ALNRVNVPFTWKRSFSEVVDED--GLLWLEGKQNLDGWVWQGNS 868 E + N + S SE V E L K +Q Sbjct: 818 GALLPEKFFTLDLYEPSKNLIRKLLHGSLSISERVSEQFAERLRPPIKSKSVLSRYQILD 877 Query: 869 IVITYTGDEGMTRVIPA 885 Y G+ +P+ Sbjct: 878 ATGVYDPVTGLRTSLPS 894 >UniRef50_Q2RXK0 CRISPR-associated helicase, Cas3 family n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RXK0_RHORT Length = 885 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 215/835 (25%), Positives = 328/835 (39%), Gaps = 96/835 (11%) Query: 11 WGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVK-AWLLF 69 WGKS + H L +HC DVAA + +++ R V A L Sbjct: 32 WGKSR-----DGESHHLAHHCADVAACFEA-MAALPGVRSRLERAAGGPLSEVDIARLAV 85 Query: 70 FIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSE 129 + LHDIGK FQ K+ L P +G + F H A D + Sbjct: 86 LVFLHDIGKLHPGFQAKAWPEGLWTGP----RHGHMREGVEIFQHQA------PPDIVRS 135 Query: 130 QSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQ 189 L + + +V HHG + + W ++A Sbjct: 136 LHLEKLIEWGVDW--------NLLFSVLAHHGRPVSMEGGRPPCW---RAVAKAGYDPGA 184 Query: 190 AREEWISVLEALFLTPAGLSINDIPP--DCSSLLAGFCSLADWLGSWTTTNTFLFNEDAP 247 A E ++ F +P + L GF SLADWLGS F D Sbjct: 185 ASAEVGGLIPRWFAGAFVQDGRPLPSMVGFAHLFCGFVSLADWLGSTRAVFPFKAELDV- 243 Query: 248 SDINALRTYFQDRQQDASRVLELSGL----VSNKRCYEGVHALLDNGYQPRQLQVLVDAL 303 Y + ++ A + GL + K A L PR Q LV A Sbjct: 244 -------DYMEKARKKAGAAVAAIGLDPRALQRKAAGRADFATLTGIDTPRPQQQLVGAF 296 Query: 304 PVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASH 363 P+A L ++EA TGSGKTE AL L DS+ FALPT+A A + R+ + + Sbjct: 297 PLAEPLVILEAETGSGKTEAALWRFVLLFAAGKVDSLYFALPTRAAAIQLHARVNKAMAR 356 Query: 364 LFSS--PNLILA-----HGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFL 416 +F + P +LA H R + G +E+ + +W ++S K+ Sbjct: 357 VFGADAPEAVLAVPGYLKSGVVGGHALPDWGVRWDDDGGLDESRL-LARWAAESAKRHLA 415 Query: 417 GQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVG 476 I V T+DQ +++ L VKH +RG + RS+L++DEVHA D YM + +L G Sbjct: 416 ATIAVGTVDQAMLAALQVKHAHLRGAALSRSLLVIDEVHASDRYMVEVQTHLLAMHLGHG 475 Query: 477 GSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPP 536 G +L+SATL + K L + + YP + +G P Sbjct: 476 GQAMLMSATLGSLARTKWLGRKTSPSFEEAVATPYPAVWGKGEVA---------PRGGIG 526 Query: 537 RFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVD 596 + + I L T I AA +GA+V ++ N V A + R+++ + Sbjct: 527 KGGEKSVAIGLVPSWTAETAAALAIDAARSGARVLVVRNTVRAAISTFDRVRQAGGEDLL 586 Query: 597 ID------LFHARFTLNDRREKENRVISNF--GKNGKRNVGRILVATQVVEQSLDVDFDW 648 + L H RF DR + V + + + GRI++ TQ +EQSLD+D D+ Sbjct: 587 LTVAKGPALHHGRFAPEDRALLDGAVEAALSVDQATRTPGGRIVIGTQTLEQSLDIDADF 646 Query: 649 LITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPD-----------GEGYGRHE 697 LIT CP D+L QR+GRLHRH RP+GFE+P +L+P+ G G + Sbjct: 647 LITDLCPVDVLLQRIGRLHRHA-LSRPSGFEVPHCRVLMPEQGLEIFLPPFFENGLGGWD 705 Query: 698 H------IYSNVRVMWRTQQHIEELNGASLFFPDAYR---------QWLDSIYDDAEMDE 742 IY ++ V+ T++ I + P R + +++++ + Sbjct: 706 ERGVLNGIYRDLSVLELTRRLIAAYPEWRI--PAMNRFLVESATHPERIEALHRELGRPW 763 Query: 743 PEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLL 797 + N K + R A + + D D+ TR G +L Sbjct: 764 ETYWANVCGKDIADAGAARNIALPIGTPFADMRYPDPDKEERIRTRLGAEGARIL 818 >UniRef50_B6IWM7 CRISPR-associated helicase Cas3, putative n=1 Tax=Rhodospirillum centenum SW RepID=B6IWM7_RHOCS Length = 961 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 215/821 (26%), Positives = 315/821 (38%), Gaps = 106/821 (12%) Query: 7 ICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAW 66 + WGK+ +HLL++H LDVAAV D +++ L L + +A Sbjct: 13 MFSRWGKARSG------LHLLVFHLLDVAAVLDAGFERRPALLARLADGLGLDRDAARAM 66 Query: 67 LLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDS 126 LL +ALHDIGK FQ E+ + Q + +H A G Sbjct: 67 LLTVLALHDIGKVATGFQASDREAAGA------LGLALAGQERMREHHSAVGQ---ALLL 117 Query: 127 LSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQ 186 D TGHHG + + E A Sbjct: 118 RLLTRHRAGSGLPDGGAAALPVMEALFALSTGHHGRPVLGLPKVSLLMETGALTD----D 173 Query: 187 DKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDA 246 D + + LF G+ + S LL G +L DWLGS + + Sbjct: 174 DMDIAATLVRAVAGLFGWRQGIPDREGLTRLSPLLNGLFTLCDWLGS----SDHFACRNQ 229 Query: 247 PSDINALRTYFQ-DRQQDASRVLELSGLVS----NKRCYEGVHALLDNGYQ------PRQ 295 P LR Y++ A R+L+ R G AL + P Sbjct: 230 PQ---ELRAYYEGTALPTARRMLDTIRPTPFGRLTPRPPAGFAALFPRLGRDGAPAVPTP 286 Query: 296 LQVLVD------ALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQAT 349 LQ L D ALP P LT+IE G+GKTE +LI AD LPT AT Sbjct: 287 LQALADRLFTADALPDGPLLTIIEDLPGAGKTEAGDLITHRLIALDRADGAYVGLPTMAT 346 Query: 350 ANAMLTR-------MEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQ 402 A+A R ++ A+ P ++LAH + +RA G EE Sbjct: 347 ADAAFARRFDRDGGLDFGAALFTEVPQVVLAHSRRHRTPGYAVTPTRA----GLEEGEGY 402 Query: 403 CCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMN 462 W ++S+++ L +GV T+DQ L L ++ +R G+ R VL+VDEVHAYD+YM Sbjct: 403 ALDWFNRSSRRALLTDLGVGTVDQALAGALRARYATVRLAGLWRKVLLVDEVHAYDSYMQ 462 Query: 463 GLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVE--------NNSAYPLI 514 LL A+L+ Q +G V+L+SATLP + +Q L+ Y + AYPL+ Sbjct: 463 TLLHALLRWQGRMGDPVVLMSATLPARLRQDLIRAYAEGAGWADVAAMAERTRPGAYPLL 522 Query: 515 NWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLIC 574 G + L P P+ T+ +R+ G V Sbjct: 523 TLVSGQGIAQHPLAPVPGPGT-------RPVRFEAAHDLDTVEDRLRGWLAQGRCVLWFR 575 Query: 575 NLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNG--KRNVGRIL 632 N V A ++RL +L D L+HARF DR E ++ GK+ GR++ Sbjct: 576 NTVGDAVAAWERLCDL-----DPLLYHARFLPADRSRIEAALLDAVGKDSCPAARRGRLV 630 Query: 633 VATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEG 692 +ATQ EQSLD+D D ++ PAD + QRL R P G P PDG Sbjct: 631 IATQAAEQSLDLDADEMVIDLAPADAVVQRL--GRRRRHARMPDGAPAPDGVERRPDGPV 688 Query: 693 ------------------YGRHEHIYSNVRVMWRTQQHIEE----------LNGASLFFP 724 +G IY++ +W T + + + L +L Sbjct: 689 LLLTPRPDRPGPAWYRSLFGGAAQIYADDARLWLTARCLLDPGAIPGRRPGLPPDALILA 748 Query: 725 DAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKAR 765 D R ++++Y P+ + E A+ ++ + R Sbjct: 749 DDLRPLIEAVYAAEPAGVPDALAARHLAAEGADISRKQRGR 789 >UniRef50_C2CN10 CRISPR-associated helicase Cas3 family protein protein (Fragment) n=1 Tax=Corynebacterium striatum ATCC 6940 RepID=C2CN10_CORST Length = 792 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 195/773 (25%), Positives = 301/773 (38%), Gaps = 91/773 (11%) Query: 149 WFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGL 208 V HHG + D D++R A L Y + I + + Sbjct: 16 AETIASVVESHHGIPARTVDYDRAR----AILREYPENWLLVQAAVIEAMADATEVKPII 71 Query: 209 SI--NDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASR 266 +++ L+ G ADW S ++F+ + + R QD Sbjct: 72 GKIQSELFVPTIQLITGLVIAADWCASNERAFPYVFDCEQ-----------EQRVQDGLA 120 Query: 267 VLELSGLVSNKRC-------YEGVHALLDNGYQPRQLQVLVDAL---PVAPGLTVIEAPT 316 + +GL + + Y + + PR +Q AL L +IEA T Sbjct: 121 SIGFAGLWNASKTMKPDVAEYFAAAFGWPDEWDPRPIQQRAFALARGSDGASLHIIEAST 180 Query: 317 GSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLI---LA 373 GSGKTE ALA A ++ V+FA PT ATAN + R+ A ++ + + LA Sbjct: 181 GSGKTEAALAAAHAYAEKHGCHGVVFAAPTMATANGLFNRVIQWAQNVVPAGDTTAAYLA 240 Query: 374 HGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLP 433 H + +Q ++ + ++ V +W + S KK L V T+DQVL+ L Sbjct: 241 HSMNSLVKEYQRLRVKGVSTDTSGNGSVTAMEWFA-SPKKGLLSNFAVSTVDQVLMMALQ 299 Query: 434 VKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQK 493 +H +R LG+ V+I+DEVHAYD++ + LE+ LK A VILLSATLP+ +K+ Sbjct: 300 SRHNMLRHLGLAGKVVIIDEVHAYDSFTSAYLESTLKWLAWYEVPVILLSATLPVDKKES 359 Query: 494 LLDTYG---LHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADM 550 L+ Y D + YPL+ NG + L P ++ S+ + Sbjct: 360 LVQAYRSVLGEEDWESVSDGYPLLTIADANGVREESLDIGPNEIHADVSVIGDT------ 413 Query: 551 LPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRR 610 D +L G ++CN V AQ Y L + +V+ L HA F ++R Sbjct: 414 --DRELLTLCEELLTDGGCALVVCNTVRRAQNSYSMLVKKFPDEVE--LHHAAFIAHERA 469 Query: 611 EKENRVISNFGKNG----KRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRL 666 KE +++ G R RI VATQVVEQSLD+D D +I+ P DLL QR GRL Sbjct: 470 VKEGKMLQQLGPEARRGRSRPYRRIYVATQVVEQSLDIDVDVMISDMAPIDLLVQRAGRL 529 Query: 667 HRHHRKYRPAGFEIPVATILLPDGEGYGR-------HEHIYSNVRVMWRTQQHIEELNGA 719 HRH R ++ A + + EG+ IY ++ + Sbjct: 530 HRHQRPLEDRPEKLRRARLFIRGAEGWDEMPVFDSGTAAIYDPAVLLASAAAVSRKWLSE 589 Query: 720 SLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDN 779 P+ + Y D V + ++ A E R + +E + D Sbjct: 590 GYRRPEDIAGIVRGTYA-TVADPESPVADWQPAWDEAREESRKLQNLAINRSETFRYPDP 648 Query: 780 D----------------------ETILAVTRDGEMSLPLLPYVQTSSGKQL---LDGQVY 814 D E +A RD + ++ ++P G + V Sbjct: 649 DVGNYRALFARYFESKGSAVDKEEAAIAQVRDADPTIEVIPIETGDFGYRPWGTESEYVL 708 Query: 815 EDLS-HEQQYEALALNRVNVPFTWKR---SFSEVVDEDGLLWLEGKQNLDGWV 863 +D S LA V +P + F V+D+ K+ GWV Sbjct: 709 DDESPEFSLARHLAGATVRLPTRMSKHESVFDRVIDQ------LEKETPVGWV 755 >UniRef50_Q60AC8 CRISPR-associated helicase Cas3 n=1 Tax=Methylococcus capsulatus RepID=Q60AC8_METCA Length = 881 Score = 434 bits (1116), Expect = e-120, Method: Composition-based stats. Identities = 222/884 (25%), Positives = 339/884 (38%), Gaps = 105/884 (11%) Query: 10 YWGKSSKSLTKGNDIHL-LIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVK-AWL 67 +WGK D L L H LDVA+V + + + + ++ L Sbjct: 9 FWGKIRLGQNGQTDQWLSLSQHSLDVASVFAALAE-LPAFHHKLKVSSGIELDGIQLQRL 67 Query: 68 LFFIALHDIGKFDIRFQYKSAESW----LKLNPATPSLNGPSTQMCRKFNHGAAGLYWFN 123 LHD+GK ++ FQ K ++ + P + P ++C F Sbjct: 68 AVIALLHDVGKANLGFQDKVFDAKAPRAGHVRELAPLFDAP--ELCEAF----------- 114 Query: 124 QDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKS----RWEMPAS 179 +L + D+F P +S ++ A HHG + Q D++ Sbjct: 115 ATALDLDEIADWF-------DPPDSIEQFLLAAWSHHGAPVRFQTGDQTGNYYLARTRWW 167 Query: 180 LASYAAQDKQAREEWISVLEALFLTPAGLSINDIP--PDCSSLLAGFCSLADWLGSWTTT 237 A QA E + + + F + IP AG LADWLGS Sbjct: 168 RADATRDPMQAVAELMRIAKQAFPDAFKRGVARIPGRARLQHRFAGLVMLADWLGSH--- 224 Query: 238 NTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQ 297 F DI R + L+ + L S+ G++PR LQ Sbjct: 225 -QAFFPLGRLLDIGFARNAARRALLTV--GLDTASLQSDLAQRPTTFKHW-FGFEPRPLQ 280 Query: 298 VLVDALPVAP---GLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAML 354 VD L + EA TGSGKTE ALA ++L D + FALPT+ A + Sbjct: 281 SAVDQQAPDDAESRLLIAEAETGSGKTEAALARFFRLFAAGKVDGLYFALPTRVAARELY 340 Query: 355 TRMEASASHLFSSPNLILAHGNS----------RFNHLFQSIKSRAITEQGQEEAWVQCC 404 R+ +F P A + + L + + I + Q Sbjct: 341 LRVVNYLEQIFPKPECRPAAVLAVPRYARIDNVPIDKLDRLLPDDRILCHDDPDRLRQER 400 Query: 405 QWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGL 464 QW ++ K+ + V T+DQ L+S + +H +R + + RS+L+VDEVHA D YM L Sbjct: 401 QWAAEHPKRFLAATVAVGTVDQALLSAVQTRHAHLRSVCLDRSLLVVDEVHASDVYMRRL 460 Query: 465 LEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENN-----SAYPLINWRGV 519 L +L +GG +LLSATL + L G T EN + YP + Sbjct: 461 LRGLLSHHVGLGGHAMLLSATLGAWACAEFLQACGCTTLAAENYAGACAAPYPALTLLS- 519 Query: 520 NGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDV 579 R + R I P + ++ +++A AGA+V ++ N V Sbjct: 520 --GIRRSVGFARGGSVKRVRIDPRS----WLKQPERLISELVSALEAGARVLIVLNTVGR 573 Query: 580 AQVCYQRLKE--------LNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRI 631 A + L++ L Q I H RF +DR + V +GK G + Sbjct: 574 ANALQRALEQHPAIQKVWLFRCQDSICPHHGRFAPSDRELLDQAVSRRWGK-GTPPGPLV 632 Query: 632 LVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPD-- 689 L+ TQ +EQSLD+D DWLIT CPAD+L QR+GRLHRH RP GFE P T+L+PD Sbjct: 633 LIGTQTLEQSLDIDADWLITDLCPADVLLQRVGRLHRHA-CTRPPGFEAPRCTVLMPDCA 691 Query: 690 ---------GEGYGRHEH-----IYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIY 735 GE + +Y+++R + T+ + E + P R+ ++ Sbjct: 692 SLAEWLDARGEASREAKRAGFGSVYADLRTLELTRLMLLEQTEVEI--PRDNRRLVEGAT 749 Query: 736 DDAE---MDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEY-SLQDNDETILAVTRDGE 791 + P W +G + Q+ + L N+ A TR G Sbjct: 750 HPERLATLSGPAWGKHGQNVEGLTLAHNIAAFHVAAQYDRPFGELSFNELNEKARTRLGL 809 Query: 792 MSLPLLPYVQTSSGK-------QLLDGQVYEDLSHEQQYEALAL 828 +L +P Q S G + G + ++ E + Sbjct: 810 DTLR-IPLRQPSPGPFGAEIAEITIPGHLAPRERDDETAELIRR 852 >UniRef50_C2KP49 Helicase n=1 Tax=Mobiluncus mulieris ATCC 35243 RepID=C2KP49_9ACTO Length = 907 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 189/810 (23%), Positives = 316/810 (39%), Gaps = 60/810 (7%) Query: 9 HYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQS--VVLQNTFCRNEMLSKQRVKAW 66 WGK SK+ + L+ H D A A+ +D LQ + + V Sbjct: 7 QIWGKYSKNYG----FYPLLAHLYDTAVCAEIVFDYWLRPGLQEILKNDFG---ESVLQV 59 Query: 67 LLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDS 126 + LHD+GK + FQ + A + N P + Q N+ S Sbjct: 60 VSLVAGLHDLGKGNPVFQGQQA--AYETNKDLPVIREHFNQFANTEYFIDVKRREANRPS 117 Query: 127 LS-EQSLGDFFSFFDAAPHPYESW-FPWVEAV-TGHHGFILHSQDQDKSRWEMPASLASY 183 + + +G F D + + W+ AV GHHG D R ++ ++ Sbjct: 118 VRRHEQVGALDLFGDESKLFKDRVTEHWLAAVVAGHHGTFFRETKSDDER-QIDSTKLLR 176 Query: 184 AAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGS---WTTTNTF 240 + K RE+ S++E I P LL G ++AD L S W Sbjct: 177 SGVWKTVREDSTSLIERFCGLHIADLPRVISPISLMLLTGLVTVADRLSSGDDWVAEQAA 236 Query: 241 LFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLV 300 + S N Q+ +RV L G+ L + PR Q + Sbjct: 237 ALKSGSISLDNPDEWKSYIFQKMLNRVKLLLGI---FEPLSNAQETLLGCWNPRPAQKI- 292 Query: 301 DALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEAS 360 A G+ I + TGSGKTE AL L ++ +IF LPTQAT NAM+ R++ + Sbjct: 293 -AQNSGDGMLTIMSATGSGKTEAAL-----LRHANASERLIFLLPTQATTNAMMRRLQEA 346 Query: 361 ASHLFSSPNLILAHGNSRFNHLFQ-----SIKSRAITEQGQEEAWVQCCQWLSQSNKKVF 415 + +S LAHG + + + + T+ G A + Sbjct: 347 FQN--TSNVGTLAHGMAILENFYSQKITVTEHRDDSTDTGDVSARGLYPTEFVRQKSARL 404 Query: 416 LGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADV 475 L + V T+DQ +++ LP+K +R L + S +++DEVH Y L+E ++ Sbjct: 405 LAPVVVATVDQAVMASLPMKWTALRLLALANSHVVMDEVHTLSPYQTRLIEPLMTWLGRT 464 Query: 476 GGSVILLSATLPMKQKQKLLDTYGLHTDPVENNS----AYPLINWRGVNGAQRFDLLAHP 531 G V LLSAT+P + ++L + Y + +P V G + L Sbjct: 465 GTRVTLLSATMPHEHLEQLTNAYTGNLSHENTTRIEEYDFPATASVSVGGKVKVSALKI- 523 Query: 532 EQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELN 591 + ++ I + ++++ + I A++ + N +D AQ L +L Sbjct: 524 DINRDQYQINYDLKEVSNISEAHIDWAKQIHEKYPKARLGVFVNTIDRAQEIAGGLLKLG 583 Query: 592 NTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLIT 651 ++ + H+R T R E E + + G G G ++V TQ +E SLD+D D + T Sbjct: 584 ---CNVMVLHSRLTAKHRSEVEEALFNALGPRGNAE-GLVVVGTQAIEASLDIDLDLIST 639 Query: 652 QHCPADLLFQRLGRLHRHH---RKYRPAGFEIPVATI----LLPDGEGYGRHEHIYSNVR 704 PA L QR GR R R+ R G I L+ + GY I Sbjct: 640 DLAPAPSLLQRFGRAWRRQDTKREQRIPGMSAMQVQIVAGMLIDENAGYQEKWWIPYLYS 699 Query: 705 VMWRTQQHIEELNGASLFFPDAYRQWLDS--IYDDAEMDEPEWVGNGMDKFESAECEKRF 762 + RT + + GA + P+ + +++ + + D ++ D++ S E++ Sbjct: 700 PLRRTCKWLRGHRGA-IVAPNDIQSFVEQSWVSAEELEDAEDF-----DEYASILQEQQK 753 Query: 763 KARKVLQWAEEYSLQDNDETILAVT-RDGE 791 + + W Y + + + +T +DGE Sbjct: 754 ATQWINSWPMFYRGEARMDALRHLTWQDGE 783 >UniRef50_Q0AA29 CRISPR-associated helicase Cas3 n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0AA29_ALHEH Length = 871 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 214/852 (25%), Positives = 322/852 (37%), Gaps = 83/852 (9%) Query: 11 WGKSSKSLTKG-NDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLF 69 WGK K L HC DVA V + + L Sbjct: 24 WGKLHKGPAGEVEAWLPLADHCTDVAFVFLALCRTNAAHRALSQAIGHAPTPVHLERLAA 83 Query: 70 FIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSE 129 LHDIGK + FQ K+ + +A LY + Sbjct: 84 LAFLHDIGKCNHGFQAKA--------------RREPRDTAGHVHEISALLYDPDLQKRLL 129 Query: 130 QSLG--DFFSFFDAAPHPYESWFPWVEAVTGHHGFIL---HSQDQDKSRWEMPASLASYA 184 SLG + S+FD A + HHG + H++ R+ +P Sbjct: 130 DSLGFDEIASWFDDAEGTLGMLLASI----SHHGKPIKLDHTETNRYRRYWLPRDGIDPL 185 Query: 185 AQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNE 244 F S P+ AG LADW+GS F Sbjct: 186 EDLTNLTLTVRQAFPQAFT--GDASPLSPTPELQHRFAGLVMLADWIGSHEGFFPFRHGP 243 Query: 245 DAPSDINALRTYFQDRQQDASRVLEL-SGLVSNKRCYEGVHALLDNGYQPRQLQVLVDAL 303 + + Q +A + L S ++ L G+ P LQ + Sbjct: 244 EC------RAAFAQRAASEAITTIGLNSQPFRSRLDPRAGFTDLFPGFSPTALQAALMDP 297 Query: 304 PVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASH 363 P P + + E+ TGSGKTE ALA ++L + DS+ FALPT+ A + R+ Sbjct: 298 PNVP-VMIAESDTGSGKTEAALACFFQLFARGEVDSLYFALPTRVAARELYERILLFVKE 356 Query: 364 LFSS--PNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGV 421 +F P ++LA Q++ S Q E + W ++ K+ I V Sbjct: 357 VFRDNAPPVLLAVPGYAKVDGEQALPSEDNLWQDDETLRRRERAWAAERPKRFLAAPIAV 416 Query: 422 CTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVIL 481 T+DQ L++ + V H +R + + RS+L+VDEVHA DTYM GLL A+L G +L Sbjct: 417 GTVDQALMATMQVNHAHLRAVCLERSLLVVDEVHASDTYMRGLLRALLDHHTRSGARALL 476 Query: 482 LSATLPMKQKQKLLDTYGLHTDPVENNSA----YPLINWRGVNGAQRFDLLAHPEQLPPR 537 LSATL ++ L + A YP + G + + Sbjct: 477 LSATLSADAREAFLTPQSAVPVVPSFSEAIQSPYPALTGSGSAPTPIGGVGTRQK----- 531 Query: 538 FSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDI 597 ++Q EP + + R+ A AGA+V ++ N V A + + + Sbjct: 532 -AVQLEPAP--YLAEPKALQPRVAEALRAGARVLVVLNTVARAIDFLRAAEADPVVARTL 588 Query: 598 DL-------FHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLI 650 H RF DR + V FGK G + +LV TQ +EQSLD+D DWLI Sbjct: 589 FCVNNQTCPHHGRFARADRLILDREVSRVFGK-GSPDGALLLVGTQTLEQSLDIDADWLI 647 Query: 651 TQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDG-------------EGYGRHE 697 T CP D+L QR+GRLHRH R+ RP GF+ P T+L+P G Sbjct: 648 TDLCPMDVLLQRIGRLHRHTRR-RPPGFDTPTCTVLMPAEPSLEAWFDAKGRLHGLAGLG 706 Query: 698 HIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLD-SIYDD--AEMDEPEWVGNGMDKFE 754 +Y ++R+ T + I G ++ PD R+ ++ +++ + A P W G+ Sbjct: 707 RVYPDLRIAQLTIERIGA--GCTIRIPDDNRELIETTVHPERLARFTGPPWDGHQQQLLG 764 Query: 755 SAECEKRFKARKVLQW----AEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQL-- 808 +A ++ W E D DE + + L L P + + G+ L Sbjct: 765 TATAHGLAARTALMPWHQPFGPELRFGDFDERLATRLGLEDRRLSLDPPITSPFGQTLHE 824 Query: 809 --LDGQVYEDLS 818 + G + D Sbjct: 825 LPVPGWMAGDTD 836 >UniRef50_C9M9R3 CRISPR-associated helicase Cas3, core n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M9R3_9BACT Length = 909 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 227/933 (24%), Positives = 363/933 (38%), Gaps = 116/933 (12%) Query: 10 YWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSK-----QRVK 64 +W K K H L+ H DVAAV + Q + + R S + Sbjct: 5 FWAKFDK--KDPTRWHSLLGHSADVAAVTERLL-QLPLWRRRLSRAASGSGWQSGIGALA 61 Query: 65 AWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQ 124 L + ALHD K +F+ K +G + + +Q Sbjct: 62 DRLCAYAALHDFSKLSAQFRLKKE----------KDQHGDFYKGVDHITTACDLVLRMDQ 111 Query: 125 DSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYA 184 ++ + + + +S F W + HHG S+++ + W + A Sbjct: 112 EAAYRGKIPELVDW-----DCDDSVFLW--ILLSHHGRTP-SREKLRLHWPLLWPDARKD 163 Query: 185 AQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSL---LAGFCSLADWLGSWTTTNTFL 241 A + A EE ++ F P ++ P L AG LADW+GS + Sbjct: 164 APEWTALEELRQSVKRWF--PKAWGTDERMPQAPLLGHFFAGVLMLADWIGSTEYFFPYE 221 Query: 242 FNEDA-PSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLV 300 + P + A R L GL + L G+ P +LQ + Sbjct: 222 GCDGRLPRGCGCDPITWSRSA--ARRALRQIGL-DRSEIFSHKEFLDQFGFLPNELQKAI 278 Query: 301 DALPVA--PGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRME 358 D+LP++ GL IEAPTG GKTE AL +L D + D + FA P + A+ + R+ Sbjct: 279 DSLPLSVDGGLYSIEAPTGCGKTEAALRLFSRLFDAGLVDGLYFANPNRLAASQLYDRLW 338 Query: 359 ASASHLFSS--------PNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQS 410 A F + P I+A G + +Q +E+ +W ++ Sbjct: 339 AFDKKAFQAALPTVLAVPGYIMADGVKGRALDNLEVAWPDFEDQAKEKGACLGRRWAAER 398 Query: 411 NKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLK 470 K+ + V TIDQ L+S + V+H +R I RS+L++DEVHA D+YM L ++L+ Sbjct: 399 PKRFLTSPLAVGTIDQALLSTVRVRHCHLRAAAIQRSLLVIDEVHASDSYMTRLTSSLLE 458 Query: 471 AQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVEN-----------------NSAYPL 513 ++GG V+L+SATL +++ +G + + YPL Sbjct: 459 WFKNLGGHVLLMSATLTEALREQYFSQWGGLRQSIRFSKSLSEKKAEKKAEKKVPAGYPL 518 Query: 514 INWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAA--NAGAQVC 571 I+ + QR D + S+ P C+ D+ + + +A N + Sbjct: 519 IS--SLVDRQRSDTVVPLTAQDKNVSLTLWP-CMTDINKTARRVAELWRSAPENEKPCIL 575 Query: 572 LICNLVDVAQVCYQRLKELNNTQV------DIDLFHARFTLNDRREKENRVISNFGKN-- 623 ++ N V AQ Q L +L + + L H RF DR+ + V FGK+ Sbjct: 576 VLRNTVAQAQKTAQELSKLLPEKALFQVQGVLTLHHGRFASPDRKVLDETVERYFGKDTE 635 Query: 624 ------GKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAG 677 R G +LVATQ VEQSLDVDFD+L+ CP D+L QR+GRL RHHR RPAG Sbjct: 636 KGAPAESDRRDGVVLVATQTVEQSLDVDFDYLVVDLCPGDVLLQRIGRLFRHHRP-RPAG 694 Query: 678 FEIPVATILLPDGEGYGRH-------------EHIYSNVRVMWRTQQHIEE--LNGASLF 722 F P +L+P E + Y N+ ++ T + G Sbjct: 695 FCEPQCVLLVPSDEPDAEWLCSSAAKKYGIGEKRAYENIASVYATWSRVRRDAQAGRPWL 754 Query: 723 FPDAYRQWLDSIYDDA----EMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEY--SL 776 P R+ ++ + + P + + + S + + ++W++ + S Sbjct: 755 LPSQNREIVEETVGEGLAKIIKENPRFEESEKSRQGSRLAVRGQASFAAVKWSKSFIDSK 814 Query: 777 QDNDETILAVTRDGEMSLPLLPYVQ--TSSGKQLLDGQVYEDLSHEQQYEALALNRVNVP 834 + + TR G L Q + G +L V E L R + Sbjct: 815 NEVGKEPELGTRLGAKDLEYDLPEQPISPFGLKLRSVTVPE-----WMGRYLDEPRNRLK 869 Query: 835 FTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGN 867 KR+ +V +E G + + N + V G Sbjct: 870 ---KRTEEKVSEEAGG---KERANKEIAVGAGL 896 >UniRef50_B5GY58 Crispr-associated helicase cas3 n=1 Tax=Streptomyces clavuligerus ATCC 27064 RepID=B5GY58_STRCL Length = 1004 Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 187/907 (20%), Positives = 300/907 (33%), Gaps = 110/907 (12%) Query: 11 WGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQS-VVLQNTFCRNEMLSKQRVKAWLLF 69 W KS G ++LL+ H LD AAVA WD+ + + R + L++ Sbjct: 5 WAKSPDRA--GGTMNLLLSHLLDTAAVAGVMWDRFLPRVVHEELDRVAGGPGRGRGLLMW 62 Query: 70 FIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSE 129 +HD GK Q + E +L A + ++ H AG + Sbjct: 63 LCGIHDFGKATPSHQRQRPELAAELPAAGLGWEEEIGE-RYRWEHAPAGAFLLR------ 115 Query: 130 QSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQ 189 A P E V GHHGF + A + Sbjct: 116 -------PLLTGAGWPQEHIRWVWPLVAGHHGFFPVESALGSPPAALRRVDGDSA--WEA 166 Query: 190 AREEWISVLEALFLTPAGL-------SINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLF 242 R++ + V+ GL ++G +ADW+ S + Sbjct: 167 VRQKLMCVILDELGFGDGLDGLAALCPARPPSRALQLQISGLVVMADWIASGPENFPGV- 225 Query: 243 NEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDA 302 D D++ + R + A + L G G+ PR +Q L Sbjct: 226 --DVLEDVSYAGA--RRRAEAAWAAIGLQGGFRYLAEPGPGTFRRRFGHDPRPVQELAAR 281 Query: 303 LP---VAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEA 359 PGL ++EAP G GKT L A L + A V +P +T + M R+ Sbjct: 282 AARELDGPGLLIVEAPPGEGKTWAGLIAAETLAARTGAGGVFVGMPVHSTCDPMFRRVRE 341 Query: 360 SASHLFSS--PNLILAHGNSRFNHLFQSIK-SRAITEQGQEEA----------WVQCCQW 406 + + P + L HG + + + A+ G+E A + QW Sbjct: 342 WVRGIDEALAPAVALLHGRRTLDRSWNVLLPQDAVGHCGEEPAAAVHGTAGDPRLVPAQW 401 Query: 407 LSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLE 466 + L V +DQ+L + K +R G+ V+++DE+HA D + L+ Sbjct: 402 FFDY-ARGLLCPFVVAPLDQLLYATTRTKFVMLRMAGLPGKVVVLDEIHAVDVHAQQYLQ 460 Query: 467 AVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHT--------DPVENNSAYPLINWRG 518 L+ V+LLSATL Q++ L+D Y D + YP + Sbjct: 461 EGLRWLGQARVPVVLLSATLTAGQRRSLVDAYLAGAAGEEEYTYDGLPQPDGYPSVT--A 518 Query: 519 VNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLER----------------MIA 562 V D A + S E + ++LP+ + Sbjct: 519 VRYDHGGDGAAPRCVVRRCASALRERDVIVEILPEGPEGAEDTAVDRAVADRAVAALLGE 578 Query: 563 AANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGK 622 A G + ++ N AQ + L+ ++ L H +FT R E + + Sbjct: 579 ALADGGRALVVRNTAHRAQTLWTGLRTRFGD--EVLLLHRQFTAERRAEIADDCLRQLAP 636 Query: 623 NG-KRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIP 681 +R I+VA Q EQ+ DVD D L+T P DLL QR GRLHR RP P Sbjct: 637 GSPERPRRLIVVADQTAEQAFDVDVDLLVTDLAPIDLLLQRAGRLHRDTTVVRPVRLAAP 696 Query: 682 VATILLP--------DGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDS 733 + R +Y ++ R + P A + + Sbjct: 697 RLVVTGTTAVSGTGGPPRFPARSTALYGRHPLL-RAAHLVHRAARTGARLPGAVPRLVGE 755 Query: 734 IYDDAEMDEPEWVGNGMDKFESAE---------------CEKRFKARKVLQWAEEY---S 775 Y D + D P+ +R R Y Sbjct: 756 GYADGDTDLPDGWRATAGAAREQARRDRERRVERAVPRLLTRRGDGRGRTLGGLSYIGLP 815 Query: 776 LQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYE-----DLSHEQQYEALALNR 830 D DE + A+ RD + + V+ +G + G ++ + + + Sbjct: 816 PADGDEGLSALVRDRA-AAEAILLVRDGTGYRTPCGTALGPEGFVADRDDRLVDLVRRHT 874 Query: 831 VNVPFTW 837 V +P +W Sbjct: 875 VELPVSW 881 >UniRef50_C8XAY8 CRISPR-associated helicase Cas3 n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XAY8_NAKMY Length = 918 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 205/919 (22%), Positives = 321/919 (34%), Gaps = 118/919 (12%) Query: 26 LLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQY 85 L H D A VA WD+ + + + L++ HD+GK F Sbjct: 2 PLWRHLSDTAEVAGLLWDRWMAPSVRRIIADGRPDDVARTVLVWLAGSHDLGKASPAFAA 61 Query: 86 KSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHP 145 + + A P + + H Q + ++ Sbjct: 62 QVRPLTEPMRDAG-LPFSPLVEHPPRTPHAQQSHRILRQ-------------WLESNGFD 107 Query: 146 YESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTP 205 ++ W GHHG D + A + +Q +W++ + Sbjct: 108 RDTADSWAIVPGGHHGVAPGRDDITHAGVAAQAGTGPWRG-VQQELTDWVARNSGITAHL 166 Query: 206 AGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDAS 265 L + P ++ +ADW+ S T +R + Sbjct: 167 DSLRTAALAPTAQVVITAVVIVADWIASDTARFPCFDTRSTA-----------ERVRSGW 215 Query: 266 RVLELSGLVSNKRCYEGVHALLDNGYQPRQLQV---LVDALPVAPGLTVIEAPTGSGKTE 322 R + L S G + R Q PGL +IEAP G GKTE Sbjct: 216 RDVGLLPAWSADAGAVETLFGRRFGREARPAQEEAIRAAQAITGPGLMIIEAPMGEGKTE 275 Query: 323 TALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLF-SSPNLILAHGNSRFNH 381 ALA L ++ +IFALPT AT++AM+ R S+ LAH + N Sbjct: 276 AALAAGEVLAERFGCGGLIFALPTMATSDAMVDRFTGWLRGAAQSAQPFFLAHSKAPLNP 335 Query: 382 LFQSIKSRAITE-----QGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKH 436 F ++++ + T G +WL+ KK L + TIDQVL + L +H Sbjct: 336 TFAAMRTLSPTTGDGGVDGCGAGVAVALEWLT-GRKKGMLANFVIGTIDQVLYAALRGRH 394 Query: 437 RFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLD 496 +R L + V+++DEVHA D YM L VL+ G VILLSATLP ++Q+LL+ Sbjct: 395 VALRHLALAGKVVVIDEVHAADVYMAVFLRDVLRWLGAYGVPVILLSATLPAARRQELLN 454 Query: 497 TYGLHTDPVENNS----------------------------------------AYPLINW 516 Y P S YPLI Sbjct: 455 AYSTGARPATPASPTARASRRRRPRALTSAGPPPPSCDEATASGEGLAGAGPLPYPLITI 514 Query: 517 RGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNL 576 G + A R + + +++ + AA+ G V +I N Sbjct: 515 AGAGSMVQVAPAAAGLARTVRVEFASD--------DESELVDLVRAASQGGGVVGIIRNT 566 Query: 577 VDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKR---NVGRILV 633 V AQ L+ +V + L H+R+ DR ++ +++ G G+ RI+V Sbjct: 567 VGRAQRSAAVLRAELGEEV-VTLTHSRYLATDRMRRDRDLLAELGAPGQARRMPGPRIVV 625 Query: 634 ATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGF-EIPVATILLPDGE- 691 TQV+EQSLD+DFD L+T PADL+ QR+GRLHRH R G P ++ + + Sbjct: 626 GTQVLEQSLDIDFDLLVTDLAPADLILQRMGRLHRHRRHAHERGLMTKPRCVVVGANWDA 685 Query: 692 ---GYGRHEHIYSNVRVMWRTQQHIEELN--GASLFFPDAYRQWLDSIYDDAEMDEPEWV 746 R + + R + G + P + +D Y W Sbjct: 686 DPVEPDRGSVAVYGLAALLRAAVVLRSDGSPGRDIELPADIPRLVDQAYAAEVEVPEAWC 745 Query: 747 GNGMDKFESAECEKRFKAR-------------KVLQWAEEYSLQDNDETILAVTRDGEMS 793 D + A+ E + + W+ + A RDGE Sbjct: 746 ATFDDAEQKAQQESAGRTTGAEMFSIGKVPVLDLFGWSHANAGDAEGHDGRAKVRDGEDG 805 Query: 794 LPLLPYVQTSSGKQLLD-------GQVYEDLS-HEQQYEALALNRVNVPFTWKRSFSEVV 845 L +L Q G +L ++ D + + A+A + +P S + Sbjct: 806 LEVLVVQQRGDGWFVLPWLSDCGGAELPRDAAPEPRLARAVAQCSLRLPRQL--SVWRID 863 Query: 846 DEDGLLWLEGKQNLDGWVW 864 G L +G+ + W Sbjct: 864 QVIGELERQGRASWQQSPW 882 >UniRef50_A8LM38 Cas3: CRISPR-associated helicase Cas3 n=1 Tax=Dinoroseobacter shibae DFL 12 RepID=A8LM38_DINSH Length = 857 Score = 427 bits (1098), Expect = e-118, Method: Composition-based stats. Identities = 197/783 (25%), Positives = 314/783 (40%), Gaps = 77/783 (9%) Query: 11 WGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFF 70 WGK+ G H L +H +DVAAV + V+ + K AWL F Sbjct: 18 WGKTD---AAGRPSHHLAHHSMDVAAVLEGLLRHPVISARAAAAAGIYLKPEAVAWLSAF 74 Query: 71 IALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQ 130 LHDIGK RFQ K P +H + GL W ++ + Sbjct: 75 AFLHDIGKLSPRFQAKV---------------WPDGIAGGTASHLSEGLIWADRLLDGQP 119 Query: 131 SLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQA 190 L A W A+ HHG + + Sbjct: 120 LLDGAAGPLVAPLVAGGMEKAWFGALLAHHGRPMAFDSFVYPPNPRDVFRDVPGYDWRAE 179 Query: 191 REEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDI 250 + L F A L AG +LADW+GS P Sbjct: 180 DRRMGAALRQWFPEIAIDLAVLRSHRLVHLFAGLLALADWIGSDDGAF--------PQRR 231 Query: 251 NALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQ-PRQLQVLVDALPVAPGL 309 + Y + A+ L GL + G+ PR +Q + +P+ L Sbjct: 232 DFDPDYGASARARAAAALVAIGLSNPAWPGTAPSFRDLTGHPVPRGVQQTIADIPLEARL 291 Query: 310 TVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPN 369 +IEA TGSGKTE ALA+ +L + D++ FA+PT+A A + R++ + + + Sbjct: 292 VIIEAETGSGKTEAALAHFARLRSEGRVDALYFAVPTRAAAGQLHRRIQEAMARIGGPEA 351 Query: 370 LILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQ-CCQWLSQSNKKVFLGQIGVCTIDQVL 428 ++ G ++ + G W W ++ + + V TIDQ L Sbjct: 352 VLAVPGM------LRAGLAEGRKLPGFRVLWDDDRVHWAAEHPTRFLAAPVAVGTIDQAL 405 Query: 429 ISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPM 488 ++ L VKH +R + RS+L++DEVHA D YMN + ++ +GG +L+SATL Sbjct: 406 LAGLQVKHAPLRAAALSRSLLVIDEVHASDAYMNAVARPLVAGHTALGGHTLLMSATLGA 465 Query: 489 KQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQ-RFDLLAHPEQLPPRFSIQPEPICL 547 Q+ L + + YP I R D + + + + PR L Sbjct: 466 GQRAAWLGQPA-PSQRAASGLPYPAIWHDAAPADPLRPDPVGYAKSVHPR---------L 515 Query: 548 ADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRL-KELNNTQVDID----LFHA 602 + + +AAA GA+V ++ N V+ A ++ + + + + L HA Sbjct: 516 VGTMDAEAAAHKAVAAAEKGARVLVLRNTVEAAVATWRAATRARADLCLSVLGQPALHHA 575 Query: 603 RFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQR 662 RF DRR+ + V G+ G G +++ TQ +EQSLD+D D+LIT CP D+L QR Sbjct: 576 RFAAEDRRKLDAAVEQALGRAG-VTTGIVVLGTQTLEQSLDIDADFLITDLCPMDVLLQR 634 Query: 663 LGRLHRHHRKYRPAGFEIPVATILLPD------------------GEGYGRHEHIYSNVR 704 +GRLHRH + RPAGFE VA+I++P+ + G + IY ++R Sbjct: 635 IGRLHRHADRTRPAGFEAAVASIMVPECGLAALADGPRFENGLGAWQTAGGYAGIYLDLR 694 Query: 705 VMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKA 764 + T++ I + + P+ R +++ P+ + + + E R A Sbjct: 695 GLELTRRCIADRPVWQI--PEDNRTLVEAA------THPDALASVEAALDWDEYGHRIDA 746 Query: 765 RKV 767 + + Sbjct: 747 KSL 749 >UniRef50_C5V9N6 Putative helicase n=1 Tax=Corynebacterium matruchotii ATCC 14266 RepID=C5V9N6_9CORY Length = 894 Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 182/859 (21%), Positives = 323/859 (37%), Gaps = 64/859 (7%) Query: 11 WGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQS--VVLQNTFCRNEMLSKQRVKAWLL 68 W K T + L+ H LD +AV + + L++ + V L+ Sbjct: 12 WAKERGLETP----YPLLGHLLDTSAVMGELYHRWLRPGLRSLLIDELG---EHVDKLLM 64 Query: 69 FFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLS 128 LHDIGK + FQ ++ + +L + + Y+ ++ Sbjct: 65 LVAGLHDIGKANPHFQQQNKQQGETFTAIRENLRRHGLTVSPDYM-----SYFSETRAMR 119 Query: 129 EQSLGDFFSFFDAAPHPYESWFPWVE-AVTGHHGFILHSQDQDKSRWEMPASLASYAAQD 187 + ++ W+ A+ GHHG + ++ + Sbjct: 120 RHENHSAIILDEDIETDMDAADSWLALALVGHHGKFAAFNPTRATDLKITKIKQIFDTTP 179 Query: 188 KQAREEWISVLEALFLTPAGLSIND-IPPDCSSLLAGFCSLADWLGS---WTTTNTFLFN 243 + + L + + + D + P + L++G LAD + S WT T + Sbjct: 180 WGKIHKALIAQVELGVGMSRDELPDHVSPTVTVLISGLVVLADRIASQLDWTQTAQREMD 239 Query: 244 EDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDAL 303 E S + + + + + GL N E A + +G+ PR Q AL Sbjct: 240 EGIISLADPKQWVTHRAAESVEIIKKTVGLYQNWSTREAARADILDGFPPRFAQA--AAL 297 Query: 304 PVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASH 363 GL + A TGSGKTE AL L + +IF LPTQAT NA++ R++ + Sbjct: 298 EQGDGLWNVMAATGSGKTEAAL-----LRHATRNERLIFLLPTQATTNAIMRRVQKAFK- 351 Query: 364 LFSSPNLILAHGNSRFNHLFQ---SIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIG 420 ++ LAHG + + S+ + + Q+ + +++ + L + Sbjct: 352 -GTTNVASLAHGLAITEDFYSQNISVSDVMVGDNYQDNGGLFPTEFVKSGASR-LLAPVC 409 Query: 421 VCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVI 480 V T+DQ ++ LP K +R L + + +++DEVH D Y + LLE +L A + Sbjct: 410 VGTVDQAILGSLPTKFNHLRLLALANAHVVIDEVHTLDAYQSELLEDLLHWWAATHTPIT 469 Query: 481 LLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQL----PP 536 L+AT+P Q++K Y H ++ R + P + P Sbjct: 470 FLTATMPAWQQEKFKQAYSKHDSDPARFPSFTTWLPRSGDEIDSDPATDAPPVVIPTEPY 529 Query: 537 RFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVD 596 + +P+ ++ + A A++ +ICN VD AQ Q Sbjct: 530 TIDLTVDPVPYDQLVDSHIRWIQAQRQAYPQARIGIICNTVDRAQAIVQAFDHEKP---- 585 Query: 597 IDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPA 656 L H+R T RR + + GKNG+ ++V TQ +E SLD+D D L T+ CPA Sbjct: 586 -VLLHSRMTAEHRRRNAEELEQSIGKNGEATT-VLVVGTQAIEASLDIDLDALRTELCPA 643 Query: 657 DLLFQRLGRLHRHH---RKYRPAGFEIPVATI-LLPDGEGYGRHEHIYSNVRVMWRTQQH 712 + L QR GRL R R R G +I + + + + + + + + Sbjct: 644 ESLIQRAGRLWRRDDVARADRVPGLAHKTISIAAIDNPKEWQTKPYFAAQLDRVAHWIAA 703 Query: 713 IEELNG-ASLFFPDAYRQWLDS----IYDDAEMDEPEWVGNGMDKFESAECEKRFKARKV 767 ++E++G L FPD + +++ + + + N E AE + A Sbjct: 704 LDEVDGKKPLRFPDQIQDFINQSSMGLTELFTTLNDDEDDNASGMDEIAELIHKINAGNN 763 Query: 768 LQWAEEYSLQDN------------DETILAVTRDGEM-SLPLLPYVQTSSGKQLLDGQVY 814 + L D+ DE TR + ++P + + T + G + Sbjct: 764 ARIDFSTVLADDATNTDFFTITHKDELAETATRLIDRITIPAILHDPTGTIPGAWTGSIA 823 Query: 815 EDLSHEQQYEALALNRVNV 833 + S + + Sbjct: 824 DLNSIKWHDTEAIREALRA 842 >UniRef50_B0TDT7 Crispr-associated helicase cas3 n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TDT7_HELMI Length = 754 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 206/775 (26%), Positives = 337/775 (43%), Gaps = 84/775 (10%) Query: 155 AVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIP 214 A+ GHHG + + AS KQ R + + L F D P Sbjct: 4 ALQGHHGSFVVP------CKRVDDGSASINELWKQLRLQVVEELLRFF-QMDIWKQQDFP 56 Query: 215 PDCS--SLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSG 272 + LL+G LADW+ S F D P A + F+ + LSG Sbjct: 57 DHSTFGMLLSGITVLADWIASSEA----FFGGDIPDWHQAKQKNFEVLALQFLDQVGLSG 112 Query: 273 --LVSNKRCYEGVH-ALLDNGYQP--RQLQVLVDALPVAP---GLTVIEAPTGSGKTETA 324 ++ + E + + P R LQ L + + + GL +IEAP G GK+E Sbjct: 113 KKPINAEMTEEDSFLRFWRHLHLPSLRPLQALCEQIARSEKTGGLAIIEAPMGEGKSEAG 172 Query: 325 LAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQ 384 + + D + ALPT ATAN M +R++ S+ + L L HG + L Sbjct: 173 IYLLNCWVAGSGGDGMYVALPTAATANQMYSRVQELLSNQGTEKGLRLVHGMAWLLDL-- 230 Query: 385 SIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGI 444 + E+ + E W + K+ L GV T+DQ +++ + VK +R LG+ Sbjct: 231 ---QKQYWEEDEREDWFRP-------KKRALLAPYGVGTVDQAMLAAMRVKFGCLRLLGL 280 Query: 445 GRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDP 504 L++DEVHAYDTYMN +++ +L + V+LLSATLP+K++++LL+ YG Sbjct: 281 AGKGLLIDEVHAYDTYMNTIIDQLLAWCGHLSIPVVLLSATLPVKRRKQLLEAYGGDVIE 340 Query: 505 VENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAA 564 N YPL+ F +L P + ++++ P L + + + A Sbjct: 341 GAVNQQYPLVTVAVDAKTCEFPVL--PSRPNQEYNLRMLPGALENAEAIVNAVLDWADAH 398 Query: 565 NAGAQVCLICNLVDVAQVCYQRLKELN-----NTQVDIDLFHARFTLNDRREKENRVISN 619 ++G ++ N V +AQ +++LK+L+ + V++ L+HARFT R+ E++V+ Sbjct: 399 DSG-CAGVVVNTVYMAQQVFRKLKKLHRKGRLPSDVELLLYHARFTAGRRKAIEDKVLRW 457 Query: 620 FGKNG-----KRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYR 674 K +R +LVATQVVEQSLD+DFD L T+ P DLL QR+GRL RH R R Sbjct: 458 LDKGSLQDPARRPKRAVLVATQVVEQSLDIDFDVLFTELAPIDLLLQRIGRLWRHERPRR 517 Query: 675 -PAGFEIPVATILLPDGEG---YGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQW 730 +I P+ +G+ +Y + V+ +T +++ N L P +R Sbjct: 518 LNHAESKANVSIFAPEIAERFYWGKTGAVYEPL-VLLKTLAVLQKRNQFQL--PQDFRPL 574 Query: 731 LDSIYDDAEMDEPEW----VGNGMDKFESAECEKRFKARK---------------VLQWA 771 ++S+YDD + P+ + + +++ + E++ +AR+ + Sbjct: 575 IESVYDDEIANVPDEWLYSLASVREEYRKNQVEQQQRARESLYPKPLKSELAVTPIFAVN 634 Query: 772 EEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRV 831 EE S + + AVTR G + +L + + +E L H +Y V Sbjct: 635 EEVSEGEVSSHLHAVTRIGSETRSVLAVPKDEWERVGQGLVSHEQLHHWMKY------HV 688 Query: 832 NVPFTWKRSFSEVVDEDGLLWLEGKQNL------DGWVWQGNSIVITYTGDEGMT 880 ++P W + W + +G GN I I Y + G Sbjct: 689 SLPEKWLSGCELPALKPYRQWSVMPMHPGSPSFWEGTSKGGNVIRIEYDDELGFR 743 >UniRef50_C4X9J1 CRISPR-associated Cas3 family helicase n=7 Tax=Bacteria RepID=C4X9J1_KLEPN Length = 871 Score = 422 bits (1084), Expect = e-116, Method: Composition-based stats. Identities = 208/811 (25%), Positives = 312/811 (38%), Gaps = 112/811 (13%) Query: 27 LIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYK 86 ++ HC V +A R + A HDIGK F K Sbjct: 41 VLSHCQIVGEIARALIALYPEPMR--SRLFPAGSEMA-------AAGHDIGKVSPTFAAK 91 Query: 87 SAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPY 146 + C +H AGL N E G A Sbjct: 92 IFAA------------------CDVNDHRLAGLSAVNPGL--ETLWGGHAGVSQATAESL 131 Query: 147 ESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPA 206 + E + HHGF + R++ + L+A F A Sbjct: 132 HAPRYVPEILGQHHGFNP------GLNGRRGDAEVFGGPLWFDERKKLVDKLKAEFS--A 183 Query: 207 GLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASR 266 D + ++AG S+ADW+GS F N + Q Q + Sbjct: 184 DWPTFD-SAAQARVVAGLTSVADWIGSGE----FFENPE------------QAWQPVITA 226 Query: 267 VLELSGLV----SNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTE 322 L +G + + V D +PR+ Q V PGL ++EA G GKTE Sbjct: 227 ALNNAGFIKPVIRQGLSFADVFFPDDPPKKPREAQSRFIDQVVGPGLYILEAQMGMGKTE 286 Query: 323 TALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPN---LILAHGNSRF 379 AL A++++ Q+ A + FALPTQ T+N + R A + S+ +L H + Sbjct: 287 AALYAAYQMLVQEKATGIYFALPTQLTSNKIYDRFNAFLHQIVSTETPQHALLLHSGAWL 346 Query: 380 NHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFI 439 + E W + K+ L V TIDQ L++V+ VKH F+ Sbjct: 347 ------------MDTEMGEEGSPGGAWFN-HRKRGLLAPFAVGTIDQALMAVMNVKHGFV 393 Query: 440 RGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYG 499 R G+ V+I+DEVH YD Y +L A+++ + +VI+LSATL ++ LL Sbjct: 394 RAYGLAGKVVILDEVHTYDLYTGTILNALVEFLRQIDCTVIILSATLSQTRRDALLQQ-- 451 Query: 500 LHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLER 559 + AYPLI +R + + + L D + E Sbjct: 452 -----STTSEAYPLITAAPSAERERGLVEIGVP------VTENTTVILHSCRKDESAREE 500 Query: 560 MIAAANAGAQVCLICNLVDVAQVCYQRLKELN-NTQVDIDLFHARFTLNDRREKENRVIS 618 + A G QV I N + AQ Y L + L H+RFT R E R ++ Sbjct: 501 ALRRAELGQQVLWIENTIAEAQQTYLDLASRAVEAGCETGLLHSRFTPQHRNRHEQRWVA 560 Query: 619 NFGKNG---KRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRP 675 +G+ G ++ GRILV TQV+EQSLD+D D+L+++ P D+L QRLGRL RH R Sbjct: 561 LYGRAGWPQRKQCGRILVGTQVLEQSLDIDADFLVSRFAPTDMLLQRLGRLWRHTDTPRH 620 Query: 676 AGFEIPVATILLPD--------GEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAY 727 A + +L P G +G +YS V+ R+ + + + SL P Sbjct: 621 ASAKA-ECWLLSPSLESALANPGSAFGMSAMVYSPY-VLCRSLEVWQAI--PSLSLPGDI 676 Query: 728 RQWLDSIYDD--AEMDEPEWVGNGMD--KFESAECEKRFKARKVLQWAEEYSLQDNDETI 783 R +D Y + E + + +F S E + A+ L + +L ++ Sbjct: 677 RPLIDQTYTERAEEGTWATLLHELKNGSRFRSGEQALQSLAKLTLSTGGK-TLPEHKAET 735 Query: 784 LAVTRDGEMSLPLLPYVQTSSG---KQLLDG 811 RD L LL ++T G +LLDG Sbjct: 736 RYSDRDTHD-LLLLRGLRTQDGITYMRLLDG 765 >UniRef50_B4UE67 CRISPR-associated helicase Cas3 n=3 Tax=Bacteria RepID=B4UE67_ANASK Length = 888 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 211/810 (26%), Positives = 328/810 (40%), Gaps = 84/810 (10%) Query: 11 WGKSSK-SLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRV--KAWL 67 WGK + + H L+ HC DVAA + V+++ R L +A L Sbjct: 9 WGKLRRTPGSPVERWHPLVAHCADVAACLEALL-ADAVIRSRLARLAGLRDLEAPQRARL 67 Query: 68 LFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSL 127 ALHD GKF+ FQ K A A + G + F ++ Sbjct: 68 CILAALHDAGKFNHGFQRKGA-------LAPADVAGHVGE-------------LFGALAV 107 Query: 128 SEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFI--LHSQDQDKSRWEMPASLASYAA 185 + + A HHG + + + A+ Sbjct: 108 PSPERAALVAALGLREIDAWGASRLLVAALAHHGAPENVRNPSRPPRAALWRATEDRDPI 167 Query: 186 QDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNED 245 A + PA + P +G +LADW+GS + + + Sbjct: 168 AGIAALATTARSWYPAWREPAEPFPDR--PPFQHAFSGLVTLADWIGSDEAAFPYAADPE 225 Query: 246 APSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLD--NGYQPRQLQVLVDAL 303 A + ++R Q R L + + + A D + +PR Q V L Sbjct: 226 A-----DRMPFARERAQQVLRRLWVDPSAARAALRGVMPAFTDLFDVERPRPAQQAVLDL 280 Query: 304 PVAP--GLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASA 361 VAP GL+++EA TGSGKTE A+A +L + D + FALPT+ +A + R+ + Sbjct: 281 AVAPEGGLSILEAETGSGKTEAAVARFVRLFAEGRVDGMYFALPTRTSATQIHRRLVDAM 340 Query: 362 SHLFSS----PNLILA-HGNSRFNHLFQSIKSR----AITEQGQEEAWVQCCQWLSQSNK 412 F P ++LA G R + L R A+ E+ ++ W + K Sbjct: 341 RRCFPDERERPPVVLAVPGYLRVDDLVGGRDPRLPPFAVCWPDDEQERMRWRGWAVEHGK 400 Query: 413 KVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQ 472 + G + V TIDQ+L+S LP+KH +R + R L+VDEVHA D YMN LLE VL+ Sbjct: 401 RYLAGTVVVGTIDQILLSALPLKHAHLRAAALLRHFLVVDEVHASDAYMNRLLETVLERH 460 Query: 473 ADVGGSVILLSATLPMKQKQKLLDTYGLHTDP---VENNSAYPLINWRGVNGAQRFDLLA 529 GG +L+SATL +++ + + + P YP I+ RG G + D Sbjct: 461 LAAGGHALLMSATLGAAARERFVRSSADGSLPPLAACEEMRYPGISCRGA-GTELADREP 519 Query: 530 HPEQLPPRFS-IQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLK 588 P P + EP+ + D + + + AA AG +V +I N V A + L+ Sbjct: 520 RPAGGPADSKPLAIEPVPILDEASAIAGMA--LDAARAGGRVLVIRNTVKGALAVQRDLE 577 Query: 589 ELNNTQVDIDLF---------HARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVE 639 ++ LF H+R+ DR + + + GK GR++VATQ V+ Sbjct: 578 ARAGSRDRALLFECEGQAAPHHSRYAAPDRERLDRAIEAALGKRA-GAGGRVVVATQTVQ 636 Query: 640 QSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRH--- 696 QSLD+D D L+T CPAD+L QR GRLHRH + RPAGFE +L+P G++ Sbjct: 637 QSLDLDADLLLTDLCPADVLLQRAGRLHRHAVRKRPAGFERARVALLVPCDPDLGKYITA 696 Query: 697 ----------EHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDE---- 742 +Y ++R++ T + E A + P R ++++ + Sbjct: 697 RGDARGPQGIGTVYRDLRILQATWSFVGEH--AEIEIPANNRAFVEAATHPEALGRVVAR 754 Query: 743 --PEWVGNGMDKFESAECEKRFKARKVLQW 770 W + + E+ V W Sbjct: 755 GGERWTLHARAVTGALLGEQVLATTNVFDW 784 >UniRef50_B6WQ58 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WQ58_9DELT Length = 654 Score = 414 bits (1065), Expect = e-114, Method: Composition-based stats. Identities = 180/656 (27%), Positives = 271/656 (41%), Gaps = 63/656 (9%) Query: 219 SLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKR 278 +AG +LADWLGS + F D D ++LR Q A + +E GL Sbjct: 3 WCVAGLVTLADWLGS----DEHFFPPDTLLDEDSLR-------QRAGKAVETIGLGLPPV 51 Query: 279 CYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIAD 338 A + +G P LQ A PG+ VIEAP G GKTE AL A+ L+ + AD Sbjct: 52 VQGLDFAKIFSGRAPYPLQAEAAAAIDRPGIHVIEAPMGMGKTEAALWAAYHLLSRGQAD 111 Query: 339 SVIFALPTQATANAMLTRMEASASHLFSSP-NLILAHGNSRFNHLFQSIKSRAITEQGQE 397 + FALPTQAT+N M R + L HGNS +++ A + Sbjct: 112 GIFFALPTQATSNRMFLRFADFVRRVCPQAVPAQLIHGNSWLQDELKALVCPATPGIEAD 171 Query: 398 EAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAY 457 W ++ GV T+DQ L++VL VKH +R + V+++DEVH Y Sbjct: 172 PCWFNTT-------RRSLFAPFGVGTVDQALLAVLAVKHFALRRFALAGKVVVIDEVHTY 224 Query: 458 DTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWR 517 D Y L+ + + +G +VI+LSATL + + LL + YP I+ R Sbjct: 225 DMYTGTLVRYLCRELEQLGCTVIILSATLTEEARCSLLSLPAGEEG---RDIPYPRISGR 281 Query: 518 GVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLV 577 + PE+ PP P+ + L + + A GAQ+ +CN V Sbjct: 282 AASDV-------LPERCPPSL---PDKVVHVMHPGRGEALAQAVELAGQGAQILWVCNTV 331 Query: 578 DVAQVCYQRLKELN---NTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVA 634 AQ + L++ + D+ L H+RF R E ++ G G+R G ILV+ Sbjct: 332 ARAQEDFMELRQRAATRDGGPDVGLLHSRFPFYRREFLEREWMARLGPEGERTKGSILVS 391 Query: 635 TQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYG 694 TQ+VEQS+D+D D L ++ P D+L QRLGRL RH R RP + E + Sbjct: 392 TQIVEQSVDLDADVLFSELAPTDMLLQRLGRLWRHPRDGRPVEAPLFCLLREGVPCEEFR 451 Query: 695 -----------RHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEP 743 R + + V+ RT + E L L P R + + Y + ++ Sbjct: 452 HLEAAAIMASLREKAFVYSPYVLLRTLELWEPL--EKLTLPSGIRGLMAATYTEKDV-PS 508 Query: 744 EWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRD-GEMSLPLLPYVQT 802 W + + ++R W D+ + TR + +L +L + Sbjct: 509 GWEALYAEDYGRDLADRRLADMGTDIWQVAL-----DDAVALKTRLSADDALMVLARARE 563 Query: 803 SSGKQLLDGQVYEDLSHEQQ----YEALALNRVNVPFTWKRSFSEVVDEDGLLWLE 854 + LL+G S + L N V +P + +DG L Sbjct: 564 GNRIVLLEGGEAAMPSDGRISLAAARRLHRNTVRIPASCLTGKP----QDGQLAPY 615 >UniRef50_C4ZJX7 CRISPR-associated helicase Cas3 n=2 Tax=Betaproteobacteria RepID=C4ZJX7_THASP Length = 876 Score = 411 bits (1057), Expect = e-113, Method: Composition-based stats. Identities = 200/839 (23%), Positives = 312/839 (37%), Gaps = 72/839 (8%) Query: 12 GKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFI 71 GK +S H L+ H DVAAV + + ++ R A L Sbjct: 12 GKLDRS-EDAIKWHPLVDHLADVAAVFEALCACRAIRRSIEAVAGRSLDHRDFARLAALA 70 Query: 72 ALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFN--QDSLSE 129 LHD+GK + FQ K LN + H A + S Sbjct: 71 FLHDLGKANAGFQAKRW------------LNEERPRGRLTAGHSAEAIALLEASNHSDEA 118 Query: 130 QSLGDFFSFFDAAPH-PYESWFPWVEAVTGHHGFILHSQDQ---DKSRWEMPASLASYAA 185 ++L + E+ + A HHG + + + W A Sbjct: 119 EALLLHLPILEICGWGKPETLDNLLRASIAHHGRPIANAPDWFNARIHWSRQGEYDP-AE 177 Query: 186 QDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNED 245 Q K + F+ GL + D P + AG LADWLGS T F D Sbjct: 178 QLKSIGAALQRFVPEAFVEG-GLPLPDTP-RFAHYFAGLVQLADWLGSDTRFFPFTNVGD 235 Query: 246 APSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLD--NGYQPRQLQVLVDAL 303 N+ ++ A R + L KR + D + P Q + Sbjct: 236 RDRIGNS-----RELASTAVREIGLDPEPCRKRFEQASPDFGDVFDTTTPYPAQSAMSDP 290 Query: 304 PVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASH 363 + + V+EA TGSGKTE AL L + D + FALPT+ A+ R+ + S Sbjct: 291 ALG-QVVVLEAETGSGKTEAALWRYLHLFARGAVDGLYFALPTRVAASQAYRRVREALSR 349 Query: 364 LFSSPN----LILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQI 419 + LA + +++ + +W +S+K+ + Sbjct: 350 AWPEGAPLAVRALAGYAAADGETARALPDFKVLWSDDPSDAEAGRRWAGESSKRFLAAPV 409 Query: 420 GVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSV 479 V T+DQ L+ L VKH +R RS+L++DEVHA D YM L+E ++ AQ +GG Sbjct: 410 AVGTVDQALLGTLQVKHAHLRHALTARSLLVIDEVHASDAYMAVLIEQLINAQIALGGHT 469 Query: 480 ILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFS 539 +LLSATL + + L + + L G+ D Sbjct: 470 LLLSATLGAAARTRYLAAGNRKAQHLPS-----LAQASGLPYPAISDAWGIRSTSGAPRE 524 Query: 540 IQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKE-------LNN 592 + C + + + AA GA+V +I N V A L+ L N Sbjct: 525 KRVAWQCEDAIDDPQRVAALALEAAEQGARVLVIRNTVPAAVATLAALEAATPNVTWLFN 584 Query: 593 TQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQ 652 I L H+RF+ DR + V + GK G+ + I+V TQ +EQSLD+D D+LIT Sbjct: 585 RDGVITLHHSRFSREDRLMLDATVEAQLGK-GRSSGPLIVVGTQTLEQSLDLDADFLITD 643 Query: 653 HCPADLLFQRLGRLHRHHRK--YRPAGFEIPVATILLPDGEG--------------YGRH 696 CP D+L QR+GRLHRH R RP F +L P+G + Sbjct: 644 LCPMDVLLQRIGRLHRHMRPVEARPNAFREARVLVLTPEGGDLTPCLTRPRHGLGRFHDG 703 Query: 697 EHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMD-----EPEWVGNGMD 751 +Y++ R++ T++ I + + + P R+ ++S + + W +G Sbjct: 704 GGVYADTRILEATRKLI--HSESQVRIPADNRRLVESATHPEALHAIESLDTAWATHGQQ 761 Query: 752 KFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDG--EMSLPLLPYVQTSSGKQL 808 + +L + + + TR G + L +Q G+ + Sbjct: 762 IDGDTGARRTSAKLGLLPLDTAFVELGFPDEVKLATRLGAADRLLTFDSPLQGPFGRTV 820 >UniRef50_UPI0001AF1D47 CRISPR-associated helicase Cas3 n=1 Tax=Streptomyces ghanaensis ATCC 14672 RepID=UPI0001AF1D47 Length = 782 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 160/768 (20%), Positives = 288/768 (37%), Gaps = 64/768 (8%) Query: 36 AVADCWWDQSVVLQNTFCRNEMLSK-QRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKL 94 VA+ D V + W+ +HD+GK FQ + Sbjct: 1 MVAEGLVDVLVGPHCRAELDRAFGPLGDAVGWVSVLCGVHDLGKLSPTFQGLREDIAAP- 59 Query: 95 NPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVE 154 P G ++ R G + L+ + + P + W Sbjct: 60 -AMGPVAAGYIRRLTRW--RGPGARTDCHHGLLTAVHMARILKAWGTVPATART-IAW-- 113 Query: 155 AVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPA----GLSI 210 A+ GHHG I + ++R + ++ + + AL+ P Sbjct: 114 ALGGHHGVIPSAASVRQAREAVG---DHGGPWWAGVCDDLVRRVVALWGLPEPEGLAWGE 170 Query: 211 NDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLEL 270 + P+ LAG S++DW+ S ++ L Y + + D +R +E Sbjct: 171 VRLSPEAVVALAGLTSVSDWIASARPEKDYV------GTGVELAGYLRQARWDEARKIER 224 Query: 271 SGLVSNKRCYE-GVHALLDNGYQPRQLQVLVDALP---VAPGLTVIEAPTGSGKTETALA 326 + E G AL +P +Q V+ + G+ V+ APTG GKT+ AL Sbjct: 225 LAWRGWRPPRETGFRALFPLEGRPHPVQEAVETVVGRMRGSGIVVVAAPTGEGKTKAALQ 284 Query: 327 YAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSS-PNLILAHGNSRFN----- 380 A L+ + A+P++ T+N +E + L P + L H + Sbjct: 285 AAATLVRRFGLRGFYVAMPSRVTSNQAFDAVEQLLAGLGEKAPPVRLLHSAAGDYLKDRR 344 Query: 381 ---HLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHR 437 + ++ + GQ++ + +W + +K+ L +GV T+DQ L++ L H Sbjct: 345 APADGAEGLRPVGVDVDGQDDGDGEAAEWFA--HKRGLLAPLGVGTVDQALMAALRSSHV 402 Query: 438 FIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDT 497 F+R G+ V++ DEVH YD +M+ L++ +L + V+LLSATLP +++ L+++ Sbjct: 403 FVRLAGLSGKVVVFDEVHGYDVHMSTLMDRLLWWLGRLRVPVVLLSATLPARRQHALVES 462 Query: 498 YGLHTD-------PVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADM 550 + AYP + W + L +++ + Sbjct: 463 WRAGAAGRIPLEVEAPAAQAYPRVAWADTESDAVETVGVEASLLNSDRTVELVRVGFE-- 520 Query: 551 LPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKEL-----NNTQVDIDLFHARFT 605 + A+AG V ++ NLV A ++++ + + ++ L HA+ Sbjct: 521 ----ARAAWAVEQASAGRCVAVVHNLVRHAVEAHEQILQRVERLPVEERPEVFLLHAKLL 576 Query: 606 LNDRREKENRVISNFGK-----NGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLF 660 +R E + + FG+ R I+V TQ++E+ LD DFD +++ P D L Sbjct: 577 QAERARVEAEIRAKFGRPDDREEDLRPRRAIVVGTQLLEEGLDADFDVMVSSVAPIDSLI 636 Query: 661 QRLGRLHRHHR-KYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGA 719 QR+GR+ RH R RP P + R+ ++ RT + + Sbjct: 637 QRMGRIQRHDRGGSRPPLLLALTGVEEEPGKIAFPRYTTNVYAEAILLRTWALLRGRD-- 694 Query: 720 SLFFPDAYRQWLDSIYDDAEM--DEPEWVGNGMDKFESAECEKRFKAR 765 + P + +D +Y E+ W E K R Sbjct: 695 RVCCPQEVQHLVDLVYGPDELLACPEGWEKQWARAAEQLGRSIARKER 742 >UniRef50_Q0BRG2 Superfamily II DNA and RNA helicase n=1 Tax=Granulibacter bethesdensis CGDNIH1 RepID=Q0BRG2_GRABC Length = 857 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 174/824 (21%), Positives = 292/824 (35%), Gaps = 72/824 (8%) Query: 11 WGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFF 70 W K ++ + LI H DV + + + E + L Sbjct: 18 WAKFAEP----DCWLPLITHLGDVGDCFEALLNLPLYRARLATIIEKEPDRVTIQRLCAL 73 Query: 71 IALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQ 130 LHDIGK FQ K K H G + + E Sbjct: 74 AFLHDIGKLSSGFQGKILTKARK-------------------GHLLEGYHVLWR---KEA 111 Query: 131 SLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQA 190 L D + E+ A HHG + Q+ + + A + +A Sbjct: 112 GLQDALGLREDLSQWGEAMRSLFLAALAHHGRPIMVVGQEPVQADWAARTGYNPTEAARA 171 Query: 191 REEWISVL-EALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSD 249 + F L + + AG +LAD +GS + Sbjct: 172 IGQACRTRYPDAFGPGPHLPHH---TELQHFFAGLVALADQIGSRECDFPLDRTIRTATK 228 Query: 250 INALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGL 309 + + L+ G + R +Q + L + L Sbjct: 229 AADVLRNINMDVSRLRQALKPVEPW--------QLFGWAEGTKLRPMQQALLELSLDIRL 280 Query: 310 TVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPN 369 +E+ TGSGKTE A +L + D + FA+PT+A A + R+ + F Sbjct: 281 AALESETGSGKTEAAFLRFLRLFRAGLVDGLYFAVPTRAAAAQLHRRINHAVQAAFGGEC 340 Query: 370 LILAHG--NSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQV 427 + G + + + R +EA Q +W ++++++ + V T+DQV Sbjct: 341 FLALPGYMKAGTSEGWALPGYRVEWADNPDEAQKQA-RWAAETSRRFLAAPVAVGTVDQV 399 Query: 428 LISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLP 487 +++ L VK R + RS L++DEVHA D+YM+ +++ +++ GG +L+SATL Sbjct: 400 MLAGLQVKWSHFRSAALARSYLVIDEVHASDSYMSAVMDRIVQNHVAHGGHALLMSATLG 459 Query: 488 MKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICL 547 + LL + P + G +R H + Sbjct: 460 SATRASLLGARKKRKTDSHSPVHAPYPSLSWAEGEERRKQEIHLGIDLTEYQKAVSVNAA 519 Query: 548 ADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDL------FH 601 + + + AA GA+V +I N VD + ++ L+ + + H Sbjct: 520 PLIADPHAIAGMALEAARQGARVLVIRNTVDQVIATQRAIEALDAHAPTLSVNGIRCPHH 579 Query: 602 ARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQ 661 +RF DR ++ V GK+ GRI+ +Q VEQSLD+D D++IT CP D+L Q Sbjct: 580 SRFAAEDRLLLDHAVEQAMGKHS-VPGGRIVCGSQTVEQSLDIDADFMITDLCPIDVLLQ 638 Query: 662 RLGRLHRH-HRKYRPAGFEIPVATILLPD-----------GEGYGR-HEHIYSNVRVMWR 708 R+GRLHRH R RP F +L+P+ G G R +Y+++ + Sbjct: 639 RIGRLHRHAGRHDRPDAFRNARCVVLIPEILSPEINLLRFGLGISRDGGGVYTDITGLES 698 Query: 709 TQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDE------PEWVGNGMDKFESAECEKRF 762 ++ I + G P R+ +++ D + P W + Sbjct: 699 VRRMIND--GMVWTIPQDNRRLVETGTDPQTLTALAQQLGPAWTQARNAVVGGRSAQGTI 756 Query: 763 KARKVLQWAEEYSLQDND---ETILAVTRDGEMSLPLLPYVQTS 803 ++ + +D VTR G LL T Sbjct: 757 GRMNLVDCTRAFDGSIDDCFPNDTNIVTRLGADRTALLFAPDTR 800 >UniRef50_UPI0001AEDDCA helicase n=1 Tax=Streptomyces albus J1074 RepID=UPI0001AEDDCA Length = 910 Score = 401 bits (1030), Expect = e-110, Method: Composition-based stats. Identities = 168/818 (20%), Positives = 293/818 (35%), Gaps = 76/818 (9%) Query: 9 HYWGKSS---KSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNT--FCRNEMLSKQRV 63 WGK + K G+ H L+ H LD AAVA+ WD+ + ++ ++ Sbjct: 6 RIWGKGAGLGKDAHGGDHAHPLVCHLLDTAAVAEVVWDELLTEHQRNIVAAALHVTNEQA 65 Query: 64 KAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKF---------NH 114 +A F+ LHDIGK + FQ + TP S + F +H Sbjct: 66 RALAAFWAGLHDIGKIRVPFQLHENGPRRADSGKTPRAYELSVEPGYAFGDQAARDGQSH 125 Query: 115 GAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGF----ILHSQDQD 170 AA +W + + P V + G HG ++H +D Sbjct: 126 EAAAHWWL-------AGAFQEIGYPSSRRRPQSQLSHAVAQLLGGHGGRFHPVVHEKDAR 178 Query: 171 KSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADW 230 P A + ++ + + + P G + P+ + +L G +L+DW Sbjct: 179 CPLARHPGLGAGSWEEQRRVHFDEVRRVVGATSVPQG----RMTPEAAVVLTGVVTLSDW 234 Query: 231 LGSWTT-TNTFLFNEDAPSDINALRTYFQDRQQDASRVLELS-----GLVSNKRCYEGVH 284 L S L E L Y+Q + A +L + G G+ Sbjct: 235 LASVEEGIRARLREEGWAGTPEDLDAYWQVARAAAPGLLRQTDLLGTGFAQPPAPAPGME 294 Query: 285 ALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFAL 344 + L RQ+ LV PG+ V+ A +TE L A L A + +AL Sbjct: 295 SGLLAS-MARQVPDLVAEQ--GPGMVVVTAAPSEERTEAILRAAAVLGHAANARGLFYAL 351 Query: 345 PTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQE------E 398 PT + A+ + ++ A + P L +S ++ A + E E Sbjct: 352 PTGSAADTHMAQVNDFAERALTGPWRSLLLHSSSRLKPAEAAAGWAHAQMTDEINAEPGE 411 Query: 399 AWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYD 458 WV S+ + L +G T+D++L +VLPVK +R + V++VDE HA Sbjct: 412 EWVASANSWLNSHHRALLAALGTGTVDELLQAVLPVKFNVMRLFALSSKVVVVDEAHARG 471 Query: 459 TYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTY----GLHTDPVENNSAYPLI 514 + + + + A + V+L +AT + +L Y G ++PVE P Sbjct: 472 AWGHQFMLRFQEWAAALRIPVVL-AATAADRSVDAMLAAYRRGAGGGSEPVEQPRRLPAW 530 Query: 515 NWRGVNGAQRFDLLAHPEQLPPRFSIQPE-PICLADMLPDLTMLERMIAAANAG-AQVCL 572 ++ + AH Q P F I + D P + + AG + + Sbjct: 531 SFVDAGSGK-----AHLPQQPAGFCRDSTLSITVVDGTPYAEIRAALAPMVAAGEGRAAV 585 Query: 573 ICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRIL 632 A ++RL E + + L H + DR + F G+ +L Sbjct: 586 YRPTPAEAVRTFRRLSE-DLPGAQVILIHEQMRNKDRWRRLAACRRAFAAEGEVCGPSVL 644 Query: 633 VATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEG 692 V T ++E S + D +++ P L R +G + +L D Sbjct: 645 VTTPMLEHSRGLPADLVVSGPAPLAKLLARA----------PQSGRDRSRLVVLRAD--- 691 Query: 693 YGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEW-VGNGMD 751 + + ++ RT + G ++ P+ + LD +Y D D W + Sbjct: 692 ---AASVLDDPALVRRTAMLLGA--GRAIALPEDLAELLDEVYADEFADRLGWAAARELR 746 Query: 752 KFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRD 789 ++ + +A +W ++ D + ++RD Sbjct: 747 LLDNRRVVRERRASGTARWLAVPGPRELDGDLALLSRD 784 >UniRef50_UPI0001A42D32 hypothetical protein PcarcW_06344 n=1 Tax=Pectobacterium carotovorum subsp. carotovorum WPP14 RepID=UPI0001A42D32 Length = 565 Score = 396 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 173/593 (29%), Positives = 258/593 (43%), Gaps = 64/593 (10%) Query: 5 KYICHYWGKSSKSLT--KGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQR 62 + YWGK+ ++ +G+D HLL YH LDVAA + N R + Sbjct: 9 RRYFQYWGKAKRAADALEGDDYHLLPYHGLDVAACGYFLLKGNYFQANHVLRELVFGDDD 68 Query: 63 VKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWF 122 V AW +F+A HDIGKF FQ K A NP +P + + K H G + + Sbjct: 69 VAAWFAYFLAWHDIGKFARGFQSKYA------NPDSPLVQ--HSGQSGKDRHDDLGFWLW 120 Query: 123 NQDSLSEQSLGDFFSFFDAAPHP--YESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASL 180 + + F P + W+ VTGHHG E SL Sbjct: 121 T----MRDDIPNLFPLGTKKPTSVVKNTLEIWLNIVTGHHGKPA---------AECKGSL 167 Query: 181 ASYAAQDKQAREEWISVLEALFLTPAGLS-------INDIPPDCSSLLAGFCSLADWLGS 233 A + D A E ++ LE F + + S LAG LADWLGS Sbjct: 168 A-FHRDDYLAVEHYLHDLETCFPDASAFPACFADKGWRNRLKQQSWALAGLTVLADWLGS 226 Query: 234 WTTTNTFLFNEDAPSDINALRTYF-QDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQ 292 + L TY+ + A +V+ + + + L + Sbjct: 227 RQQDFRYCSTP------MPLETYWREHALPTAEKVVSRLPRTPSPVPFHSIQQLFPFIQR 280 Query: 293 PRQLQV---LVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQAT 349 P LQ D P L ++E TG+GKTE A+ A +L+ QQ A + LPT AT Sbjct: 281 PTPLQQQALEADISADGPQLFILEDVTGAGKTEAAMVLAHRLMAQQKASGIYVGLPTMAT 340 Query: 350 ANAMLTRMEASASHLFS---SPNLILAHGNSRFNHLF------QSIKSRAITEQGQEEAW 400 ANAM R+ + L+S SP+L+LAHG + F + +A ++ + A Sbjct: 341 ANAMYLRLAKAYHALYSPEHSPSLMLAHGARHMSSAFMQSLWEGDSQGQAQYDKKENAAS 400 Query: 401 VQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTY 460 C W + S KK L IGV T+DQ L++V+P +++ +R LG+ +LI+DEVHAYD Y Sbjct: 401 KDCNIWFADSRKKALLADIGVGTLDQALMAVMPFRYQSLRVLGLQNKLLILDEVHAYDAY 460 Query: 461 MNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTD----PVENNSAYPLINW 516 M+ L+E ++ A GGSVI+L+ATLP+ ++KL + + ++ YP + Sbjct: 461 MSKLIELLIGFHAQQGGSVIILTATLPLNLREKLTWAFAQGIACEAVQLNPDADYPWMT- 519 Query: 517 RGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQ 569 Q +L R ++ E + + + L +ER+ AA AG Sbjct: 520 ------QLTRECLREARLDTRAEVRGE-VKIGWLTERLQGIERVKAAVAAGQS 565 >UniRef50_UPI0001B51C30 hypothetical protein SvirD4_12620 n=1 Tax=Streptomyces viridochromogenes DSM 40736 RepID=UPI0001B51C30 Length = 913 Score = 361 bits (927), Expect = 5e-98, Method: Composition-based stats. Identities = 186/870 (21%), Positives = 298/870 (34%), Gaps = 108/870 (12%) Query: 66 WLLFFIALHDIGKFDIRFQYKSAESW---LKLNPATPSLNGPSTQMCRKFNHGAAGLYWF 122 ++F ALHD+GK F S L A + Sbjct: 1 MVMFLAALHDLGKGSGCFLRMFGTSRWDGPYLRQARAMWEQQARAAGLPLGENLDAQPGA 60 Query: 123 NQDSLSEQSLGDFFSFF----DAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPA 178 + ++ + A P + GHHG I R M A Sbjct: 61 RHEHITALHMPRLLGCTCEDCGGAGSPSTGLHTAAALLGGHHGDIPSPDTI--GRAAMAA 118 Query: 179 SLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTN 238 +A++ + ++ ++ T L + + P L AG LADW+ S + Sbjct: 119 DIAAWLPIYSELIQDTAELIGVDLTTLPKLVVPERP-SAMVLFAGLVILADWIASDESHF 177 Query: 239 TFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQV 298 T+ +P ++ A + L + + L +PR Q Sbjct: 178 TYRSLTTSP------PQWWHASNMQARAAVTRLRLDAWQPDPAADWTDLFPDTRPRVFQS 231 Query: 299 LVDALPVAPGL--TVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTR 356 A A G ++E+ TGSGKT AL A L + A+PT+A AN Sbjct: 232 AAMAALPAAGPALVIVESDTGSGKTHLALWCAHHLAVTCGYQGLYMAMPTRAAANQTARE 291 Query: 357 MEASASHLFSSPN---LILAHGNSR----FNHLFQSIKSRAITEQGQEEAWVQCCQWLSQ 409 + A N L + H + + L + ++RA E ++ Sbjct: 292 IAAFMDRALGEQNTANLAVVHATAEATDFVHQLLDAGRTRAQAALDGLEDFISTPSPDDP 351 Query: 410 SNKKV------------FLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAY 457 ++ + V T+DQV ++ P H +R G+ LI+DE HAY Sbjct: 352 LQRRAVLSPWYLRRCLGLIAPFAVGTVDQVALAAQPSHHWMLRMFGLAAKTLIIDEAHAY 411 Query: 458 DTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTY--GLHTDPVENNSAYPLIN 515 + + GLLEA + AD G SV++LSATLP + L + G E P+ Sbjct: 412 ELFQQGLLEAAIAWLADAGASVVILSATLPTATQTALTRAWCEGHRVPVTERGQTGPITV 471 Query: 516 WRGVNGAQRFDLLAHPEQLPPRFSIQP-EPICLADMLPD---LTMLERMIAAANAGAQVC 571 R ++ P E D LPD + R+ A G Sbjct: 472 VDHHGIITRTGRTDDTDRSSHGERTAPAELHTFIDFLPDPGTAALAARLFDEAGKGGITV 531 Query: 572 LICNLVDVAQVCYQRLKELNN----TQVDIDLFHARFTLNDRREKENRVISNFGK----- 622 ++ N V A Y+ + +I L H + R E+ + + G Sbjct: 532 VMRNRVATAVDLYRSAAHCAQTHGWSPSEIVLLHGQNLPRYRLPGEDLLTRHLGPGKDRT 591 Query: 623 --NGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRH--HRKYRPAGF 678 N +R +++ATQV EQSLD+DFD + T P D+L QR GR+HRH + RP F Sbjct: 592 RRNPERPDRLLVIATQVAEQSLDIDFDRIYTDLAPIDVLIQRRGRVHRHQVNDSSRPEAF 651 Query: 679 EIPVATILL-----------PDGEGYGR-----HEHIYSNVRVMWRTQQHI----EELNG 718 P TIL+ P G R H+Y ++ T + E Sbjct: 652 RRPRMTILIQPGANELPMVEPPNPGEARPQGNPDSHVYPPY-LLAATWYALVQRAREDGT 710 Query: 719 ASLFFPDAYRQWLDSIYDDAEM----------DEPEWVGNGMDKFESAECEKRF-----K 763 L P ++ +Y + + K E + F + Sbjct: 711 VHLITPADTTPLIEEVYGPKPTVAHALGELLDRTSRRLQSEHGKEEGQSLSRAFRPFTRR 770 Query: 764 ARKV----LQWAEEYSLQDNDE--TILAVTRDGEMSLPLLPYVQTSSG----------KQ 807 R + L + + D+D I A++R E + + + +G + Sbjct: 771 GRSIPVTDLASGKSHGSGDSDGIVGIRAISRLSEPPIDAILLYKQPNGILSYDRSGQRRA 830 Query: 808 LLDGQVYEDLSHEQQYEALALNRVNVPFTW 837 L + + +Q + L LN ++P W Sbjct: 831 DLARHGADSPARRRQQKDLLLNTASLPAHW 860 >UniRef50_Q57821 Uncharacterized protein MJ0376 n=3 Tax=Methanocaldococcus RepID=Y376_METJA Length = 728 Score = 360 bits (924), Expect = 1e-97, Method: Composition-based stats. Identities = 155/760 (20%), Positives = 273/760 (35%), Gaps = 125/760 (16%) Query: 73 LHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSL 132 +HDIGK FQ + P P + D L + + Sbjct: 1 MHDIGKITEGFQNNIKKGKRSNKHPHPLYALPIIKNIE-------------FDYLFDIPI 47 Query: 133 GDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQ-DKQAR 191 V A+ HH + ++ D +++ L + K ++ Sbjct: 48 E-------------------VFAILSHHTQLYNNLYADYQQYKKGTFLIEEIKEFIKNSK 88 Query: 192 EEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAP---- 247 E + S+ + F L I DIP D L W+ + + F++ Sbjct: 89 EAYESLGFSKFFEFEDLKIEDIPKDAKPLELHRLRRKYWIEANNYIKSLSFDDKIKIKSI 148 Query: 248 -----------SDINAL--RTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPR 294 D +L Y +DR+ VLE + + + + Y+P Sbjct: 149 FSFMFSILQLCDDFASLNFSEYAKDREGIFDDVLENPEIYVPTLNIDNPISFILKDYEPY 208 Query: 295 QLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAML 354 + Q + ++ AP G GKTE AL +A + + +I A+PTQ T+NAM Sbjct: 209 KFQKEL--YNSKNKFVMLFAPCGRGKTEGALLWALNALKNFKRNKIILAMPTQVTSNAMY 266 Query: 355 TRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKV 414 R+ +F N+ L HG S + + + V Sbjct: 267 DRL----VKIFGEENVGLFHGKSFIKLRDSKEIEDEDDLEEIRDENFKGN---------V 313 Query: 415 FLGQIGVCTIDQVLISVL-PVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQA 473 F I + TID V+ S + I SV+I DEVH Y+ Y L + Sbjct: 314 FFKPITITTIDHVIYSFVHGFSQADFALGNIQNSVIIFDEVHYYEKYTLEHLLTLFDILR 373 Query: 474 DVGGSVILLSATLPMKQ------KQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDL 527 + +L+S TLP + ++D GL+ P + + + W+ + + + Sbjct: 374 RMDIPHLLMSGTLPNFLMNNLEGYELVVDEEGLNYKPFKLKCSENHLIWKEDDEWKVNEN 433 Query: 528 LAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRL 587 + + G +I N V+ A+ Y+ + Sbjct: 434 IINEIIE----------------------------NYKKGLSQAIILNTVERAREFYKAV 465 Query: 588 KELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFD 647 ++ +V L+H++F DR +KE+ + + +N ++VATQV+E SLD+ D Sbjct: 466 RD----KVPAILYHSQFAYKDRVKKEDEIFTLEEMRKSQNKPYVIVATQVIEISLDMSVD 521 Query: 648 WLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMW 707 + ++ P D L QR GRLHR + +R G E I LP ++H+ + ++ Sbjct: 522 VMYSELSPPDALGQRAGRLHRKGKDWRENGKEYK-LKIFLP-------YKHLPYSKELIE 573 Query: 708 RTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKV 767 +T HI + L + + ++D++Y D + P + D+ A Sbjct: 574 KTINHI-KFYEKPLDY-RDIKDFVDNVYKDYNLSIPSDLKLFFDE-----------AILF 620 Query: 768 LQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQ 807 + + S D + V D M + ++P V + Sbjct: 621 GRHWTDISTIDEEGRFFKVRDDKFMKIEVVPQVYFDELGE 660 >UniRef50_D2QT48 CRISPR-associated helicase Cas3 n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QT48_9SPHI Length = 762 Score = 350 bits (898), Expect = 1e-94, Method: Composition-based stats. Identities = 150/824 (18%), Positives = 275/824 (33%), Gaps = 166/824 (20%) Query: 39 DCWWDQSVVLQNTFCRNEMLSKQRVKAWL-LFFIAL-HDIGKFDIRFQYKSAESWLKLNP 96 D + L++ + +Q W F AL HD GK + FQ + Sbjct: 22 DLVLKAWLQLRDRYATVLGEDEQF---WFDSFIAALFHDFGKASVNFQNMLLAILKE--- 75 Query: 97 ATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAV 156 + + H ++ + + + AV Sbjct: 76 ------PIAEKGYDPMRHEFLSGLLLAAHTI----------LVTRSRKDLSANPAQLFAV 119 Query: 157 TGHHGFILHS---QDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDI 213 HH QD K P ++ A +Q +E Sbjct: 120 FTHHKDFTPDLFCQDAIKQWKIKPNDAGAFFAYARQRIQEHYPDKGDFLNGIEAAWEFMA 179 Query: 214 PPDCSSLLA------------------------------GFCSLADWLGSWTTTNTFLFN 243 S LL+ +ADW S Sbjct: 180 NKPASLLLSVKDRAITEPTLARLKEQREYSYRKTYLLHKALLVIADWTASGHRNLEEPLR 239 Query: 244 EDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDAL 303 D R++ A RV + G + R ++ + Sbjct: 240 YDEEL----------IRRKVAERVQKAGGTFTGFREFQDKSGQI---------------- 273 Query: 304 PVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASH 363 G + APTGSGKTE +L +A + ++ + +++ LPT+ TAN++ R+ Sbjct: 274 ---AGNVLAIAPTGSGKTEASLLWASQ---REGFEKIVYLLPTRVTANSLYLRLGEYFGK 327 Query: 364 LFS--SPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGV 421 + H +++ L + + + F + V Sbjct: 328 ASDGVDDYTAVVHSSAKLFRL----------------ELDETYSNFNYLREAAFFKAVTV 371 Query: 422 CTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQA-DVGGSVI 480 T+DQ+L + ++ + R+ +I+DEVHAY Y GL+ A ++ + Sbjct: 372 ATVDQMLTQGFNLGWWEMKTFHLFRAKVIIDEVHAYAPYTLGLIVASIRYLRQNFQTQFY 431 Query: 481 LLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSI 540 +++AT+P K + L G + + R Sbjct: 432 IMTATMPQKLQALLTRELGNDVTVLRDQELL----------------------DKKRNVF 469 Query: 541 QPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLF 600 E + + PD+ AG +V ++ N VD A Y + + + Sbjct: 470 HVEDRTIDQLRPDIE------QDLKAGKKVLVVVNTVDEAIRLYDQYADYKP-----ICY 518 Query: 601 HARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLF 660 H+RF + R EKE +++ + K G +L+ATQVVE SLD+D+ L T++ P D + Sbjct: 519 HSRFIVKHRTEKEQAILN--NEKEKPKEGFLLIATQVVEVSLDIDYQSLYTENAPIDAII 576 Query: 661 QRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGAS 720 QR GR++R R + P ++ P E +H + Y ++ T +++ G + Sbjct: 577 QRAGRINRKRR-------DEPGKVVVFPHSEVAEKHVYDY-PAGILNTTLDVLKQHQGVA 628 Query: 721 LFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDND 780 + ++ +Y D ++ E + + K+E +K + Y ++ Sbjct: 629 VS-EQDLLNMVEEVYKDWNVENEELYKDELSKYERLVRDK---------CSYLYDFSEDM 678 Query: 781 ETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYE 824 E + TR+G ++ ++P +L+ V E HE Sbjct: 679 EQVF--TREGLDTVSIIP---DCFKPELVSASVLEKSKHEVAIR 717 >UniRef50_A7VC53 Putative uncharacterized protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VC53_9CLOT Length = 789 Score = 350 bits (898), Expect = 1e-94, Method: Composition-based stats. Identities = 154/770 (20%), Positives = 277/770 (35%), Gaps = 143/770 (18%) Query: 73 LHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSL 132 +HD+GK + FQ ++ R+ HG ++ + ++ Sbjct: 97 VHDLGKANYIFQTIVNPQLTRM-------------AERQIPHGFLSALSLSEKQVKQEI- 142 Query: 133 GDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQD----KSRWEMPASLASYAAQD- 187 + + + AV HH D+D +W +D Sbjct: 143 ---------PECTGDDFSVLLTAVYYHHDRKDSFSDKDFYDYYDKWYKKYLQEYLGKEDV 193 Query: 188 KQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAP 247 K + +L + T S+++ L+ G + DW S Sbjct: 194 KFSAANRNQLLYSNNPTMKLRSVDEQTWCEYMLIKGLLNKFDWTVSAGYEEA-------- 245 Query: 248 SDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAP 307 EL ++ K+ + N R+LQV + Sbjct: 246 ---------------------ELHSDIAEKKLCSTIRDYFSNSL--RELQVFMQEHSDDN 282 Query: 308 GLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSS 367 V+ APTGSGKTE AL +A + + LP + ++NA+ +R++ + Sbjct: 283 --VVVIAPTGSGKTEAALLWA-------NGEKGFYTLPLKVSSNAIYSRIKDRYMY---- 329 Query: 368 PNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQV 427 ++ L H +S ++ G + + Q+ K+F + VCT+DQ+ Sbjct: 330 KDVALLHSDSLSSYF-----------DGTDGQFTDGNTRYEQA--KLFSYPLTVCTVDQL 376 Query: 428 LISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLP 487 V I + S LI+DE+ +Y + L L + G +++AT P Sbjct: 377 FKFVYKAPGTEIFAATLKYSKLIIDEIQSYSPKIVAALIYGLSELKQMEGKFAIITATFP 436 Query: 488 MKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICL 547 + + Y L D Y I++ G R + E+ Sbjct: 437 PVL-EFFMRKYRLIKD-----RDYIFIDFSATMGTDRHKIALFHEEFDFDR--------- 481 Query: 548 ADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLN 607 IA +V +ICN V AQ Y+ L + + ++ L H+R+ Sbjct: 482 -------------IAEDGYKKKVLVICNTVSKAQKVYEELSQRTD---EVFLLHSRYIRK 525 Query: 608 DRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLH 667 R + E ++ + + I V TQ+VE SLD+DFD L T+ C AD L QR+GR + Sbjct: 526 HRDQLEKMIMDF---SSNDEMTGIWVTTQIVEASLDIDFDVLYTEMCTADSLLQRMGRCN 582 Query: 668 RHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAY 727 R +K I + + IY + + R+ Q +E NG LF Sbjct: 583 RAGKK----DITDANVLIYVNYSGCMKNGKGIY-DSDIYDRSVQLLEAYNG-KLFSEKDK 636 Query: 728 RQWLDSIYDDAEMDEPEW---VGNGMDKFE---------SAECEKRFKARKVLQWAEEYS 775 Q+++ +YD + + + + KF+ + ++ F+ K + + Sbjct: 637 VQYMNEVYDVDALKNTAYFQMIKRNLAKFKSLQPLDYTSKKDIDEDFRGIKSITVIPDRI 696 Query: 776 LQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEA 825 Q+N I A+T S+ PYV ++ +++L ++ + + Y Sbjct: 697 YQENQYLIEAIT-----SVLDTPYVDSNI-RRILKAKLADITLNLNLYSD 740 >UniRef50_D1B1G2 CRISPR-associated helicase Cas3 n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B1G2_SULD5 Length = 737 Score = 338 bits (866), Expect = 6e-91, Method: Composition-based stats. Identities = 160/769 (20%), Positives = 258/769 (33%), Gaps = 155/769 (20%) Query: 37 VADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNP 96 V + + + S+Q+++ + F HDIGK + FQ Sbjct: 23 VEEALNQIDPQILHKVSTCTGWSEQKIRDLIFFSAYFHDIGKATVEFQE----------- 71 Query: 97 ATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAV 156 + +K H G D V Sbjct: 72 --------TINNGKKSYHPLYGASLLLHIK-------------DFVYKDIGENNLLFSIV 110 Query: 157 TGHHGFILHSQDQDKSRWEMPASLASYAAQDKQARE--------------EWISVLEALF 202 HH D + + E E L + Sbjct: 111 LSHHSLFPKQYDSANYNFTFLPQYSVLLKNYSSLYEKTFNEVCPYLFEFKEIKRELYQKY 170 Query: 203 LTPAGLSINDIPPDCS-----SLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYF 257 + + + DI S ++G +LADWL S T + + Sbjct: 171 VDISEKRLADIQSCFKFRVLYSYVSGILNLADWLASAR--FTQTKPTTTFLTLPTKENFV 228 Query: 258 QDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTG 317 D + R Q + +L + ++E PTG Sbjct: 229 THLTFD----------------------------ELRPFQEELSSLDKS---VLVEIPTG 257 Query: 318 SGKTETALAYA-WKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGN 376 GKTE +L +A + L +Q +I+ LPTQ T+N + R++ F L H Sbjct: 258 EGKTEGSLLWAIYNLYNQN--TKIIYTLPTQTTSNKLYDRIQNF----FDKEECGLIHST 311 Query: 377 SRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKH 436 ++ K I + + ++ K F I V TID +L + + Sbjct: 312 AKIFLEKAYEKENGIVDDVFQSDFLIS---------KSFNKPITVSTIDSLLKYFINIGR 362 Query: 437 RFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLD 496 I SV+I+DEVHAYD + G L+ L+ + V L+SA++P + K+ L Sbjct: 363 FNIATKNFLNSVIIIDEVHAYDFKLMGFLKRFLELCQEYDVRVCLMSASIPNQLKKLL-- 420 Query: 497 TYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTM 556 YPL+ + + + +++ L Sbjct: 421 ----------GIDTYPLVTQKDLFAKKANEIIKKEMFLDDD------------------- 451 Query: 557 LERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRV 616 LE M+ + V +I N V A Y L+ L D+ L+H+ F DR KE+ + Sbjct: 452 LESMMQKFHEKKNVLIIRNTVKSAFQIYNELQTLGIKSDDMILYHSTFKKRDRATKEDLI 511 Query: 617 ISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPA 676 IL+ATQ+VE SLD+DFD + T + P D L QR GR++R R Sbjct: 512 FEKLN----SKKPFILIATQIVEISLDIDFDVMFTDNAPIDALIQRFGRVNRKKSIERKG 567 Query: 677 GFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYD 736 I + P Y+N ++ T Q I+ + Y +WL+ +YD Sbjct: 568 EIFIYQNKNIRP-----------YTNESLLDLTFQTIQN----GYYELGQYVEWLNIVYD 612 Query: 737 DAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEE----YSLQDNDE 781 D+ + + F+ A C K K L E+ Y L+D ++ Sbjct: 613 KLFEDDTQLKNVKIRLFDPA-CLKYDATIKQLHGIEKSSDNYDLRDIEQ 660 >UniRef50_D0GJL0 Metal dependent phosphohydrolase n=1 Tax=Leptotrichia goodfellowii F0264 RepID=D0GJL0_9FUSO Length = 810 Score = 337 bits (865), Expect = 8e-91, Method: Composition-based stats. Identities = 114/574 (19%), Positives = 222/574 (38%), Gaps = 87/574 (15%) Query: 294 RQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAM 353 LQ + + ++ A TG GKTE L + + F LP + N++ Sbjct: 250 NDLQKFM--INNRDNNVIVVAQTGFGKTEAGLLWI-------GNNKGFFTLPLRVAINSI 300 Query: 354 LTRMEA-----SASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLS 408 R++ + + L L H + R +L + + + + + + +++ Sbjct: 301 YKRIKEQILKDDITKDEFTDKLGLLHSDFRSEYLKRFEEKKDKEIEENDFTEDRLDEYIG 360 Query: 409 QSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAV 468 ++ K + VCTIDQ+ V ++ + S +++DE+ Y + L Sbjct: 361 KT--KQLSLPLTVCTIDQIFDFVYRAPGFEMKASILAYSKIVIDEIQMYSPNLVASLIYG 418 Query: 469 LKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLL 528 +K D+GG +++ATLP K L E + + VN R + Sbjct: 419 IKFITDLGGKFAIMTATLPGIIKTLL-----------EKENVSFVTTSPFVNNKIRHKVK 467 Query: 529 AHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLK 588 ++ F I ++ ++CN V ++ Y LK Sbjct: 468 IENNEINAEF----------------------IKGKYKNNKILVVCNTVKKSKEIYDTLK 505 Query: 589 ELNNTQVDIDLFHARFTLNDRREKENRVI-----SNFGKNGKRNVG-------RILVATQ 636 E+ + +I+L H++F DR EKEN + F K+ I + TQ Sbjct: 506 EIGVLEEEINLLHSKFIKKDRSEKENEITKFASPKRFSGEEKKRRKEQNIIEHGIWIGTQ 565 Query: 637 VVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRH 696 VVE SLD+DFD LIT+ + LFQR+GR +R G+ + + G + Sbjct: 566 VVEASLDIDFDVLITELSDLNGLFQRMGRCYRSRTLKSEDGYN---CFVFTDNCSGISKS 622 Query: 697 EHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESA 756 E + + ++++ + ++G + + +D +Y + E ++ +K Sbjct: 623 ERSIIDKDIHEKSRERLLNIDG--ILTEEMKLSMIDEVYSYESLKETQYCQTIEEKL--- 677 Query: 757 ECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQV--- 813 R + + EY + + E + + RD S+ ++P K+++ + Sbjct: 678 --------RALKFYIVEYEM--SKEKVKEIFRDIH-SIDVIPKSVYEENKEMITENIKIL 726 Query: 814 ---YEDLSHEQQYEALALNRVNVPFTWKRSFSEV 844 Y+D S+ ++ E L L+++ + V Sbjct: 727 KKTYKDCSNIER-ETLKLDKIKARDEINQLKVSV 759 >UniRef50_B2V8N4 CRISPR-associated helicase Cas3 n=2 Tax=Sulfurihydrogenibium RepID=B2V8N4_SULSY Length = 729 Score = 336 bits (862), Expect = 2e-90, Method: Composition-based stats. Identities = 161/807 (19%), Positives = 293/807 (36%), Gaps = 141/807 (17%) Query: 39 DCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIAL-HDIGKFDIRFQYKSAESWLKLNPA 97 + + +L+ ++ K ++ L HDIGK FQ K A+ Sbjct: 21 EKLLENFEILKKYIQLDKETEK------AVYLACLFHDIGKASKEFQAKIAKQK------ 68 Query: 98 TPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVT 157 Q ++ H F + D F AV Sbjct: 69 --------PQPKQEIPHNLLSAVIFYFLRKHFKDNIDLFRKIQY-------------AVA 107 Query: 158 GHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDC 217 HH + D +KS+ L +A + + ++WI LE L + I + D Sbjct: 108 YHHDR--YDTDINKSK----PILEDFAVRVENDLKDWI--LEKLKI----YEITQLNIDK 155 Query: 218 SSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLE-LSGLVSN 276 S L+ G S ++ FL ++ L+ AS +E GL+ + Sbjct: 156 SKLIDGLRSALEFKKQILRNENFLKDKKTIL----LKGLLHRLDHAASADVEVEKGLIED 211 Query: 277 KRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQI 336 + + + Q AL ++ A TG GKTE AL + Sbjct: 212 YQSIFIKGLSKKGINKLKDFQK--KALDYKDKSVILTASTGMGKTEFALNWVA------- 262 Query: 337 ADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQ 396 D + LP + + N+M R+ S++F N+ + H N+ +L Q + + + G Sbjct: 263 GDKAFYTLPVRVSVNSMYERI----SNIFGKDNVGILHANTTDFYLNQF---KNLEDNGI 315 Query: 397 EEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHA 456 E + + I V T DQ+ ++ L + S +IVDE Sbjct: 316 E------VLINQVQSVRQLSMPITVSTADQIFLATLKYSGFEKIYATLTYSKVIVDEPQG 369 Query: 457 YDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINW 516 Y ++ L+ ++GG L++AT+ K+ L D Sbjct: 370 YSPDTLAVILKGLEEIYNLGGKFCLMTATMHPFIKEYLKDK------------------- 410 Query: 517 RGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNL 576 A+ + + +PE+ I L D D M++ I G +V ++ N Sbjct: 411 -----AEILEPVFNPEK--------KHKIKLVDKTVD-EMVDFAIKEYQKGKKVLILTNT 456 Query: 577 VDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQ 636 V AQ Y+ L+ L + L H+ + +REKE ++ I ++TQ Sbjct: 457 VRKAQEVYKALENLKQP-IQFHLLHSLYIQKTKREKEMQI-------QNTTEPVIWISTQ 508 Query: 637 VVEQSLDVDFDWLITQHCPADLLFQRLGRLHRH-HRKYRPAGFEIPVATILLPDGEGYGR 695 +VE SLD+D+D LIT+ AD L QR+GR++R R P P I + G G+ Sbjct: 509 IVEASLDIDYDLLITELSTADSLIQRMGRVYRKTGRTITPDN--QPNIIICTKEPSGKGK 566 Query: 696 HEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFES 755 +Y + ++ T + +E+ + + + ++ + +++D ++ + Sbjct: 567 ---VY-DKEIVDYTLKELEKYDE-KILTEEIKQEIVSTVFDLKRIENTNFYKKF------ 615 Query: 756 AECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQ---LLDGQ 812 + + + + D+ + + RD M+L ++P V ++ L + Sbjct: 616 --------DKNIKLLDYGF-MADSKKEAQDIFRDI-MNLSVIPKVIFDKNQEKINTLLEK 665 Query: 813 VYEDLSHEQQYEALALNRVNVPFTWKR 839 + + E+ LN V + R Sbjct: 666 INQKDKIERIKAMQELNDFTVSAQFYR 692 >UniRef50_A9B8P3 CRISPR-associated helicase Cas3 n=6 Tax=Chloroflexi (class) RepID=A9B8P3_HERA2 Length = 804 Score = 334 bits (856), Expect = 9e-90, Method: Composition-based stats. Identities = 160/750 (21%), Positives = 265/750 (35%), Gaps = 100/750 (13%) Query: 65 AWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQ 124 L + LHD GK FQ + H L + + Sbjct: 62 HLLYWGCFLHDFGKATGGFQQQLQGV-----------------SWNGHRHEVISLVFLD- 103 Query: 125 DSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHH---GFILHS--QDQDKSRWEMPAS 179 + AA P A+ HH G I D + Sbjct: 104 --------------WIAANFPKHQQAWLSAAIASHHRDRGIIQEKYVVDSVLAEAWSTFD 149 Query: 180 LASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLA-----DWLGSW 234 L + E + L L G+ P + + A WL + Sbjct: 150 LTHVPLMWRWLTEYANQWIGLLGLDAVGVRPLQFPN-ADQAIQHVQTDACSRIRYWLCQY 208 Query: 235 TTTNTFLFNEDAPSDIN---ALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGY 291 ++ A + + LR AS L + +L+ Sbjct: 209 YRLKQVFDDQPAHAPVPLLILLRGLTTTADHMASAHLAAIPQPIQENWQALAKRILNADQ 268 Query: 292 QPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATAN 351 QP Q L + APTGSGKTE AL +A +Q + +ALP QA+ N Sbjct: 269 QPYSHQQQSADAHNTSCLLI--APTGSGKTEAALYWALGEGEQ-PVPRIFYALPFQASMN 325 Query: 352 AMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSN 411 AM R+ A F + L HG + + ++S E G + + ++ Sbjct: 326 AMFDRLRQPAKG-FGEQAVGLQHGRALQVLYLRLLES----ENGLDSRTAAEGERWERNI 380 Query: 412 KKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKA 471 + + V + Q+L ++ +K ++ I DE+HAY+ L+ ++ Sbjct: 381 NSLHARPLKVFSPYQMLKALFQIKGFEAILSDYAQARFIFDEIHAYEPQRLALIICLINY 440 Query: 472 Q-ADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAH 530 + ++SAT P ++ L + G H + S + Sbjct: 441 LSEHFAATFFVMSATFPTIIREHLANALGRHQVIHASASLF------------------- 481 Query: 531 PEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKEL 590 Q R +Q L L + +E ++ AG QV + N V +Q L++ Sbjct: 482 --QAFARHQLQL----LDGELISASSIEHIVNDFKAGKQVLVCANTVRRSQTILALLRDA 535 Query: 591 NNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLI 650 + D+ L H+RFT+ DR E RV+ + IL+ TQV+E SL++D D L Sbjct: 536 GVAESDLLLIHSRFTMKDRSALEQRVVQRCQLGLDQPEPFILITTQVIEVSLNIDLDTLY 595 Query: 651 TQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLP-DGEG-YGRHEHIYSNVRVMWR 708 + P + L QR GR++R +K +PV P DG+G YGR + R++ Sbjct: 596 SDPAPLEALLQRFGRVNRSRKKG-----IVPVHVFREPRDGQGVYGRSKDPKQQGRIVQV 650 Query: 709 TQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVL 768 T +E+ NG + QWLD+IY DA + +W +++A+ Sbjct: 651 TLSELEKHNG-EIIDESMIDQWLDTIYADAIL-AKQWQDEYQKIYDNAQW---------- 698 Query: 769 QWAEEYSLQDNDETILAVTRDGEMSLPLLP 798 A ++D+T + ++ ++P Sbjct: 699 -IAHNLRPFESDKTTEDQFDELFDNVDVIP 727 >UniRef50_B8DAB0 Metal dependent phosphohydrolase n=8 Tax=Listeria monocytogenes RepID=B8DAB0_LISMH Length = 727 Score = 330 bits (845), Expect = 2e-88, Method: Composition-based stats. Identities = 142/741 (19%), Positives = 246/741 (33%), Gaps = 143/741 (19%) Query: 66 WLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQD 125 L LHD+GK ++ FQ K G ++ ++ HG + + Sbjct: 41 LLELVCLLHDLGKMNLLFQTKL---------------GNASGKGKEIPHGYLSVAFVPDS 85 Query: 126 SLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKS----RWEMPASLA 181 L E + + +AV HH D + R E Sbjct: 86 KLEE------------MGYSEDEIKVVYQAVARHHERKYDFSDSEWKNEIIRLEEQWEGF 133 Query: 182 SYAAQDKQAREEWISVLEALFLTP-----AGLSINDIPPDCS-SLLAGFCSLADWLGSWT 235 +Y+ + A E+ S +E L+ P G S+ D LL G + D+ S Sbjct: 134 NYSQLGENA--EYSSEVEMLYFYPGSRIFEGNSVADTETFKKYVLLKGLLNRIDFAASGG 191 Query: 236 TTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQ 295 LE L+ + + Sbjct: 192 IDVE----------------------------LENDFLIDSMDVQLAHFKAENPEADWNA 223 Query: 296 LQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLT 355 LQ + V+ A TG GKTE L + + F LP +A NA+ Sbjct: 224 LQKYMMQHQNEN--IVVIAETGMGKTEAGLLWL-------GNNKGFFTLPLRAAINAIYE 274 Query: 356 RMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVF 415 R+ + + + L H + +L + ++ + + Sbjct: 275 RITKNIVTTNQAERVGLLHSETYSQYLLHEGNAEMDIDEY-------------YTRTRQM 321 Query: 416 LGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADV 475 I +CT+DQ+ V + + S +I+DE+ Y + L L Sbjct: 322 SLPITICTLDQLFDFVFRYAGFEHKLATLSYSKVIIDEIQMYSPDLLAYLILGLSYIDKF 381 Query: 476 GGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLP 535 GG +++ATLP LL+ P E + V+ R + ++ Sbjct: 382 GGKFCIMTATLPGIVTDLLLENGVDFVQPEE----------KFVSSRIRHSMEMVHTEIE 431 Query: 536 PRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQV 595 F I ++ +ICN + A+ Y LK+ + Sbjct: 432 SEF----------------------IKPFFNNNRILVICNTISKAKKIYSELKDHFQGE- 468 Query: 596 DIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCP 655 +I L H++F DR KE + + K+ + I VATQVVE SLD+DFD L T+ Sbjct: 469 EIHLIHSQFIKRDRSAKEKAIFKDGQKDSTKK--CIWVATQVVEASLDIDFDLLFTELSD 526 Query: 656 ADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEE 715 + LFQR+GR +R+ ++ + G I+ + + ++ + E Sbjct: 527 VNGLFQRMGRCYRNR------ALDVDTNVYVFDGGAKVCSGVGIFIDKLIFENSKAILNE 580 Query: 716 LNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMD-----------KFESAECEKRFKA 764 G + + + ++ +Y + E+ + + + + AE RF+ Sbjct: 581 HAG--VLTEEKKMELVEQVYSAEALRGSEFYNDLIGTINYVKAFDSYELDKAEVRMRFRN 638 Query: 765 RKVLQWAEEYSLQDNDETILA 785 + E QDN E I + Sbjct: 639 INSVSVIPEEVWQDNVEEINS 659 >UniRef50_B3EG04 CRISPR-associated helicase Cas3 n=3 Tax=cellular organisms RepID=B3EG04_CHLL2 Length = 750 Score = 330 bits (845), Expect = 2e-88, Method: Composition-based stats. Identities = 156/757 (20%), Positives = 270/757 (35%), Gaps = 140/757 (18%) Query: 61 QRVKAWLLFFIALHDIGKFDIRFQYKSAESWLK--------------LNPATPSLNGPST 106 + L + I LHD GK FQ E L+ +P G + Sbjct: 42 EDFFEHLFYAIFLHDFGKAATGFQQMLNEEIKWNYRHEILSSSFVTFLDFDSPFKEGIAL 101 Query: 107 QMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHS 166 + N + F +E + + + +E + Sbjct: 102 GIITHHNDLSLLQEKFPFSKFNETAYERYSKNLSELEPNFAYITKMMEQL--------PE 153 Query: 167 QDQDKSRWEMPASLASYAAQDKQAREEWISVLEA-LFLTPAGLSINDIPPDCSSLLAGFC 225 + + + + ++ +A + S ++ L + + L GF Sbjct: 154 LSEKYLGYRVKRHKIPKSFEELEAYNAYQSAVKPYLKWDDDEDEQAILHGEYGFFLKGFM 213 Query: 226 SLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHA 285 + D L S + +H Sbjct: 214 TACDHLASS----------------------------------------GKDEIFSAIHD 233 Query: 286 LLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALP 345 + ++ + +A V G T + APTGSGKTE AL +A ++++ V + LP Sbjct: 234 -MKAVFKFSSYRSSQEAAAVTKGSTFLTAPTGSGKTEAALLWASSNQNERLGKRVFYVLP 292 Query: 346 TQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQ 405 A+ NAM R+ F + + HG + + L++ R E EEA Sbjct: 293 YTASINAMYKRLAGL--KGFGDEKVGIRHGKASY-FLYKYFSER---EYSPEEAKAFAKD 346 Query: 406 WLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLL 465 + S K + T Q++ +K R + + I+DE+HAYD + L+ Sbjct: 347 AGNLSKK--IYKPYKIITPFQIIKEFFGLKGFEQRIAEMTGGLFILDEIHAYDVHNTALI 404 Query: 466 EAVLKAQAD-VGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQR 524 + K ++SATLP K L Y +EN P Sbjct: 405 LEICKILKKEFCAKFFIMSATLP-----KFLKMYFQDVLEIENEITLP------------ 447 Query: 525 FDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCY 584 PE+L F+ + ++ L ++ + G +V ++CN V AQ + Sbjct: 448 ------PEELHS-FTRHKLLLLEGNIRD---GLAQIRSEIKTGKKVLVVCNQVKTAQEIF 497 Query: 585 QRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDV 644 + LK+ + L H+RF + DR+E E V + +LVATQ+VE SLD+ Sbjct: 498 RGLKDCSENSA---LLHSRFIVRDRQEIEKYVNDKYD---------LLVATQIVEVSLDI 545 Query: 645 DFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVR 704 D+D L ++ P D L QR GR++R K P V P + IY R Sbjct: 546 DYDILFSEPAPIDALIQRFGRVNR---KRPPINEIKAVCVFQSPSENDF----WIYKPER 598 Query: 705 VMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKA 764 V +T +++++G +L +Q +D +Y D + G +++FES ++ Sbjct: 599 V-EKTLSILQKVHGENLS-ESIVQQLVDEVYADG------YKGKDLEEFES------IRS 644 Query: 765 RKVLQWAEEYSLQDN---DETILAVTRDGEMSLPLLP 798 + W E D+ +E A+ S+ ++P Sbjct: 645 NFMKLWKETLPFIDDRRKEEDFYALF----DSIEVVP 677 >UniRef50_B5YAX8 CRISPR-associated helicase Cas3 n=1 Tax=Dictyoglomus thermophilum H-6-12 RepID=B5YAX8_DICT6 Length = 755 Score = 330 bits (845), Expect = 2e-88, Method: Composition-based stats. Identities = 160/816 (19%), Positives = 285/816 (34%), Gaps = 144/816 (17%) Query: 70 FIAL-HDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLS 128 AL HD+GK + FQ K E K ++ ++ H +++LS Sbjct: 68 IAALYHDLGKINSLFQNKIRELLGK--------EKIESRFSQEIPHNFLSPALLPKETLS 119 Query: 129 EQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDK 188 ++ YE F + A+ HH +D D E +K Sbjct: 120 KKIAE------------YEDIFTLIYAIIYHH-----YRDLD-FNEEYFKDYIKEEVLNK 161 Query: 189 QAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPS 248 W+ + F L + LL + Sbjct: 162 VDHLSWVKKYDENFGNSESLG-----NEYLWLL------------RDRGKIENLEKKLKF 204 Query: 249 DINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPG 308 + Y D A +E + + ++ N + Q A+ + Sbjct: 205 IMLKGLLYRLDHSSSAHVEIEKERIRNCEKLLISYLIKKPNSIGLKPFQK--KAIHLRDK 262 Query: 309 LTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSP 368 ++ APTGSGKTE A+ + D ++ LP + + NAM R++ +F Sbjct: 263 NILLVAPTGSGKTEFAVNWI-------GNDKAVYTLPLRVSVNAMYERLKE----IFGKD 311 Query: 369 NLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVL 428 + L HG+ + L + R + QE ++ + I V T DQ+ Sbjct: 312 KIGLLHGDCAYYGLDEI---RTLENDFQEH-------LHHVTSSRQLSYPITVSTADQIF 361 Query: 429 ISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPM 488 IS + ++VDE AY + ++ LK +VGG L+SAT Sbjct: 362 ISFFHFPGYEKIFSIFPYTKIVVDEPQAYTSESLAVIVEGLKRIDNVGGKFCLMSATFYP 421 Query: 489 KQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLA 548 + +L D + NNS++ + + + Sbjct: 422 ILRNELQDISEIIEVEASNNSSHFIRYYPEKDIED------------------------- 456 Query: 549 DMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLND 608 M+ +I G +V +I N V AQ Y L+ +N ++ ++L H+RF D Sbjct: 457 -------MISEIIENYKKGKKVLVITNTVKKAQSIYNLLR--SNKELKVNLLHSRFIWKD 507 Query: 609 RREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHR 668 R KE ++ + K + I ++TQ+VE SLD+DFD L ++ P D L QR+GR++R Sbjct: 508 RNMKEKQIF----LDEKSHAPCIWISTQIVEASLDIDFDILFSELAPLDTLIQRMGRVYR 563 Query: 669 HHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYR 728 R +IP I G+ G+ H+Y + ++ T + E+N L + Sbjct: 564 K----REYSEDIPNIVIAGSLGKPSGKS-HVY-DSALIDATHNILSEINTKKLD-ERIKK 616 Query: 729 QWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTR 788 ++ +Y ++ ++ D + +KA L+ + N Sbjct: 617 MLVERLYSLEQLANTKYYKKFRD--YQKLLKLEYKAENKLEAERIFRRISN--------- 665 Query: 789 DGEMSLPLLPYVQTSSGKQLL---DGQVYEDLSHEQQ--YEALALNRVNVPFTWKRSFSE 843 + +P + K+ L ++Y + ++ L VN+P K Sbjct: 666 -----IEAIPVEVYENNKEKLLEIQEKIYSKDALKKLQGLRELKDLTVNIPLEIKDYAQN 720 Query: 844 VVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGM 879 ++ + L L I + Y + G+ Sbjct: 721 LISLEKDLELRIFL-----------INLNYDTELGL 745 >UniRef50_C9L3W2 CRISPR-associated helicase Cas3 domain protein n=2 Tax=Clostridiales RepID=C9L3W2_RUMHA Length = 793 Score = 327 bits (839), Expect = 8e-88, Method: Composition-based stats. Identities = 150/784 (19%), Positives = 274/784 (34%), Gaps = 137/784 (17%) Query: 30 HCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYKSAE 89 H D+ A A+ F R + ++ K ++ +HD GK ++ FQ E Sbjct: 64 HEKDIVACAE----------RFFVRYDQYFTEKEKRLIIEACRIHDWGKANLLFQAVVNE 113 Query: 90 SWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESW 149 + ++ HG + D + + D F E + Sbjct: 114 -------EVKEELSSYNKNKKQIPHGFLSALSISVDEFLQ--ISDCF--------KREDF 156 Query: 150 FPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLS 209 ++ AV HH + + + + S L + Sbjct: 157 DMFLTAVYYHHTRNDEWDSAEIKEYAEQYYREHLEKYLGRGKVLIRSSYRNKLLFRNNNN 216 Query: 210 INDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLE 269 ++P ++ +N ++A E Sbjct: 217 CKNLP--------------------IKWEKWVLYSTIKGMLNKFDYTVSAGYENA----E 252 Query: 270 LSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAW 329 ++ + + + V L N Y R +Q + V+ APTGSGKTE AL + Sbjct: 253 INPDLEKRELIKNVEEALKN-YNLRPVQTYMKE--NVEQNLVVIAPTGSGKTEAALLWL- 308 Query: 330 KLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSR 389 + + LP + ++NA+ R++ + ++ L H +S +L +S + Sbjct: 309 ------NGEKGFYTLPLRVSSNAIYERIKVRYRY----EDVALLHSDSMQVYLKESDDTD 358 Query: 390 AITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVL 449 K+ + +CT+DQ+ V I + S + Sbjct: 359 TYK---------------KYERAKLLANPLTICTVDQLFKFVYKALGTEIFPATLKYSKI 403 Query: 450 IVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNS 509 ++DE+ AY + + LK +GG +++AT P + + Sbjct: 404 VLDEIQAYSPQVIAAIIYGLKQIVSMGGKFAIITATFPPVLEHFM--------------- 448 Query: 510 AYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQ 569 ++ LL FS E + + D M IA + Sbjct: 449 -------------KQHGLLKEENYQFQDFSNSSEWLRHKVDIRDGEMDIDEIAEQGLEKK 495 Query: 570 VCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVG 629 V +ICN V AQ Y+ L+E ++ L H+R+ DR + E ++ + R+V Sbjct: 496 VLIICNTVSKAQEIYKELEEWTE---EVHLLHSRYIRRDRNQLEKMIMQF---SEDRDVA 549 Query: 630 RILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPD 689 I V TQ+VE SLD+DFD L T+ C AD L QR+GR +R R ++ A I++ Sbjct: 550 GIWVTTQLVEASLDIDFDILYTEMCTADSLLQRMGRCNRKAR------YQPEEANIIVYA 603 Query: 690 GEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNG 749 E + +Y + R+ + + G +L + +++ +Y E+ + + Sbjct: 604 NENGVGDKSVYG-KELYSRSLDKLHQYVGKTLSEKEKI-DYINQVYCAEEIMDTSYYK-- 659 Query: 750 MDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLL 809 E EK K + L E YS Q+ DE + S+ ++P + + Sbjct: 660 -------EIEKYLKHFEELTPLE-YSKQETDEKFRNI-----QSITVVPDSIYDENQIIF 706 Query: 810 DGQV 813 + + Sbjct: 707 EKSI 710 >UniRef50_B1B9K1 Crispr-associated helicase Cas3 domain protein n=2 Tax=Clostridium RepID=B1B9K1_CLOBO Length = 761 Score = 327 bits (839), Expect = 9e-88, Method: Composition-based stats. Identities = 153/772 (19%), Positives = 270/772 (34%), Gaps = 122/772 (15%) Query: 70 FIAL-HDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLS 128 L HD+GK + +FQ K KLN A ++ ++ + + ++ Sbjct: 46 LACLYHDLGKMNTKFQNK---LIKKLNKAELKKGSECKELIQELKDN-----FLEIEEIA 97 Query: 129 EQSLGDFFSFFDAAPHP-YESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQD 187 L F + A H ++ +++ HH + ++ ++ + + L+ Y Sbjct: 98 HGYLSPAFLAEEVAEHYCFDERRILYQSIYFHH-YREKLKNLEELQKIINEDLSKYIQDF 156 Query: 188 KQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAP 247 + I L F+ I DI D S T ++ + Sbjct: 157 HYKKIGKIEKLNDSFMEYIDRRIPDIEED----------------SEETIKKYIMTKGLL 200 Query: 248 SDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAP 307 + I+ D ++ L + L + G++P +LQ + Sbjct: 201 NKIDY------SASADIEVEIKNEDLFEKTSKF-----LKEGGFKPNKLQEYMINHQDDN 249 Query: 308 GLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSS 367 +I A TG GKTE AL + + F LP + + NA+ R+ + F Sbjct: 250 N--IIRASTGIGKTEAALFWI-------GNNKGFFTLPLKVSINAIFDRIIEKIN--FPK 298 Query: 368 PNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQV 427 L H ++ +L R E E K I VCT+DQ+ Sbjct: 299 EKTGLLHSDTSSEYL-----KRNNNELNME----------QVDRTKQLSLPITVCTLDQL 343 Query: 428 LISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLP 487 + + + ++ + S L++DE+ Y + G L LK ++GG +++ATLP Sbjct: 344 VDFIFKYEGYELKLATLSYSKLVIDEIQMYSPELVGFLIVALKHITEMGGKFSIVTATLP 403 Query: 488 MKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICL 547 Y + +E N P + + QL R + E I + Sbjct: 404 PIFL------YFIDKQNIEYNKPDPF-----------YKEVEGKIQLRHRIKVLQEDINI 446 Query: 548 ADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLN 607 I +V +I N V AQ Y L + +I L H+RF Sbjct: 447 -----------EHIKNNYKNKKVLIIVNTVKQAQKLYDVLNNEIKDETNISLLHSRFIKK 495 Query: 608 DRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLH 667 R KE +++ + K I + TQVVE SLD+DFD L T+ L QR+GR++ Sbjct: 496 HRTIKEEQILEL--GDLKNKHCGIWITTQVVEASLDIDFDVLYTELSDISGLLQRMGRVY 553 Query: 668 RHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNG---ASLFFP 724 R+ R I V T G + E + + +++ + G + Sbjct: 554 RN-RNLVNEDINIFVYTGKDSYPSGISKSERSIIDKDIFELSKKVLINYMGHSDSKTIDE 612 Query: 725 DAYRQWLDSIYDDAEMDEPEW---VGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDE 781 ++ +Y + E+ + N +DK E + K L+ E Sbjct: 613 KDKMNLVEEVYSVENLKGGEYFKKIKNIIDKMEDVLAYEYDKKNIDLRNIE--------- 663 Query: 782 TILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVY-EDLSHEQQYEALALNRVN 832 S ++P+ K+ ++ +Y S + LA N++ Sbjct: 664 -----------STDIIPFSVYEECKEEIEQNLYIIKNSEDFNKRLLAKNKIR 704 >UniRef50_C6Q963 CRISPR-associated helicase Cas3 n=1 Tax=Thermoanaerobacter mathranii subsp. mathranii str. A3 RepID=C6Q963_9THEO Length = 777 Score = 327 bits (837), Expect = 2e-87, Method: Composition-based stats. Identities = 163/777 (20%), Positives = 288/777 (37%), Gaps = 105/777 (13%) Query: 1 MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSK 60 +E +K I Y K KG++ + H +D+ + +++ C+ + Sbjct: 3 IESYKDIELY-AK-RFKGDKGSEYQTIYQHTVDLLNNMEKLFEEYEEEIGEGCKKLQIDY 60 Query: 61 QRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLY 120 Q++K L I HD+GK + +FQ K E P + G S + H Sbjct: 61 QKLKYLLKLAIIYHDLGKANSKFQQKIRE--RTKVHEVPQVKGLSKE----VPHNFLSTA 114 Query: 121 WFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASL 180 + + + E+ + H D D + Sbjct: 115 FVDLEDEIEK----------GNITYEDFQNLLFTIAFSH----DRDFDVDFQYFNKYICE 160 Query: 181 ASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGF--CSLADWLGSWTTTN 238 + Q + + +L ++ P + + ++ L D S+ ++ Sbjct: 161 DVSKYIENQTLKPLLELLPSV---PDRYKMVESSNYTYRVINQLRELMLKD---SYDLSD 214 Query: 239 TFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQV 298 + + + +A K G++ Q Sbjct: 215 KKVVFRILLKGLLHRLDHSSSAGINAEEA--KINDFPEKVEVYLKRKGSFTGFKNFQ--- 269 Query: 299 LVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRME 358 A+ ++ V+ APTGSGKTE L +A+K +I+ LP + + NAM R+ Sbjct: 270 -KKAIELSEKSVVLFAPTGSGKTEFGLNWAFK-------SKLIYTLPIRVSINAMYERLA 321 Query: 359 ASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQ 418 +F + + H +S L + E+G +E + S K Sbjct: 322 ----KVFGEDKVGILHSDSMIYLL----EKHMDLERGNQELE---ALFDSVDLAKNLSLP 370 Query: 419 IGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGS 478 I V T DQ+ S L S +I+DE +Y ++ L+ ++ G Sbjct: 371 IIVTTGDQIFTSALKWPGFEKIYSLFLYSKIIIDEPQSYSPESLAIIIKTLEEIINLNGK 430 Query: 479 VILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRF 538 L+SAT+ + L D E AY E L R+ Sbjct: 431 FCLMSATINPLILKYL-------GDYAEYVQAYS------------------DEDLKRRY 465 Query: 539 SIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNN--TQVD 596 S I L L + +I A V +ICN V +Q YQ +KE ++ Sbjct: 466 S----HIISIKELSILDCVAEIIEHAKQ-KNVLVICNTVKRSQEVYQVIKENLKKFEEIP 520 Query: 597 IDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPA 656 ++L H+RF +R+KE VIS+ KNG I+++TQ+VE SLD+D+D L T+ A Sbjct: 521 VELLHSRFLEGQKRQKEQIVISDKRKNG------IIISTQLVEASLDIDYDILFTELASA 574 Query: 657 DLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEEL 716 D L QR+GR++R R P IL D G G+ +Y ++ RT+ +++ Sbjct: 575 DSLLQRMGRVYRK----RTYNELRPNVIILTKDPSGVGK---VYQ-KEIVDRTEAFLKKF 626 Query: 717 NGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAEC----EKRFKARKVLQ 769 +G + D ++ + +YD + ++ +E E +++ +A+K+ + Sbjct: 627 DGNKITEYDK-KELNEYVYDIDALSSTNFISKFKKAYELLELGFRADRKIEAQKIFR 682 >UniRef50_B9MLS5 CRISPR-associated helicase Cas3 n=2 Tax=Clostridia RepID=B9MLS5_ANATD Length = 775 Score = 326 bits (836), Expect = 2e-87, Method: Composition-based stats. Identities = 154/741 (20%), Positives = 278/741 (37%), Gaps = 114/741 (15%) Query: 74 HDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLG 133 HD+GK + FQ K + + P + S + H + + +L Sbjct: 72 HDLGKANSNFQRKIRDK--TKSNEVPQVKCLSVE----VPHNFISIAF--------VALE 117 Query: 134 DFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREE 193 D + +P +E+ H D+ Y +D Sbjct: 118 DEIDKGNISPEDFENL--LFAIAFSH----------DRGFDFNYQYFEKYICEDVSKYLT 165 Query: 194 WISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINAL 253 ++L P+ + ++I + + DWL + L Sbjct: 166 NKTLLPLFKELPSFPTKDEIEKSSNYVY--RTI--DWLKEVMLKSYTDLYNKNTIMRILL 221 Query: 254 RTYFQDRQQDASRVLEL----SGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGL 309 + + +S + S+K G++ QL AL + Sbjct: 222 KGFLHRLDHSSSAGISTEEGKITDFSHKVESYLKEKGNFVGFKEFQL----KALDFSNQN 277 Query: 310 TVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPN 369 ++ APTGSGKTE L +A +I+ LP + + NAM R+ +F S Sbjct: 278 VILFAPTGSGKTEFGLNWA-------GRSKLIYTLPIRVSINAMYERLA----KIFGSNK 326 Query: 370 LILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLI 429 + + H +S L + Q E+ + + + + I V T DQ+ Sbjct: 327 VGILHSDSMIYLLEK-------YSQSAEDVQELESLFDNVNLARNLSFPIIVTTGDQIFT 379 Query: 430 SVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMK 489 S L S +I+DE +Y ++ L+ ++ G L+SAT+ Sbjct: 380 SALKWPGFEKIYSLFLYSKIIIDEPQSYSPESLAIIIKTLEEIVNLNGRFCLMSATVNPL 439 Query: 490 QKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLAD 549 + L D E AY + + +H + +P+ + D Sbjct: 440 VLKYL-------GDISEYLQAY--------SDEELKKCWSH--------VVSVKPLSILD 476 Query: 550 MLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKEL--NNTQVDIDLFHARFTLN 607 + + I V +ICN V +Q Y+ +KE N+ V ++L H+RF Sbjct: 477 CVDE-------IVNCGKQQNVLVICNTVRRSQEVYKAIKESIGNSDDVPVELLHSRFLEG 529 Query: 608 DRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLH 667 RR+KE+ ++SN KN I+++TQ+VE SLD+D+D L T+ AD L QR+GR++ Sbjct: 530 QRRQKEHFILSNQRKNS------IVISTQLVEASLDIDYDVLFTELASADSLLQRMGRVY 583 Query: 668 RHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAY 727 R RP + P IL + G GR +Y ++ RT++ ++ +G + D Sbjct: 584 RK----RPYEGQKPNVIILTKEPSGIGR---VYQ-KEIVTRTEEFLKRFDGRKITEYDK- 634 Query: 728 RQWLDSIYDDAEMDEPEWVGNGMDKFESAEC----EKRFKARKVLQ------WAEEYSLQ 777 ++ + YD + ++ + +E + +++ +A+K+ + + Sbjct: 635 KELNEYAYDVEVLSNTNFMKSFKKAYELLKLGFKADRKIEAQKIFRDVVTVEGIPRKVFE 694 Query: 778 DNDETILA-VTRDGEMSLPLL 797 N+ETI + R G SL + Sbjct: 695 VNEETIRECLKRIGSKSLSPI 715 >UniRef50_C7N973 CRISPR-associated helicase Cas3 n=2 Tax=Bacteria RepID=C7N973_LEPBD Length = 804 Score = 325 bits (832), Expect = 6e-87, Method: Composition-based stats. Identities = 138/779 (17%), Positives = 266/779 (34%), Gaps = 135/779 (17%) Query: 67 LLFFIAL-HDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQD 125 LL + HD+GK + +FQ K + + HG + + Sbjct: 41 LLLLACIYHDLGKINKKFQSKLSGQKQN----------------GELPHGLLSTSFIDSK 84 Query: 126 SLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAA 185 SLSE +V HH +D + E +S Sbjct: 85 SLSENGF------------DKSDIKVLSYSVALHH-----ERDISEIEEEDFSSEIELMN 127 Query: 186 QDKQAREEWISVLEALFLTPAGLSIND-----------------IPPDCSSLLAGFCSLA 228 + +++ L+ ++ +I + L G Sbjct: 128 IEADYFLKYLEKLQNIYFDYVNKNIEENLKYSIFKIENEKVKLKKLSKKYYKLNGRIYSQ 187 Query: 229 DWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLD 288 D++ S T + Y V E + + K + L Sbjct: 188 DFILSEKETFETFQKYVMLKGLLNKIDY---AASSYIPVEEKNDFLEEKMDDFLKNVLKK 244 Query: 289 NGYQP--RQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPT 346 + + +LQ + + V+ A TG GKTE L + + F LP Sbjct: 245 DNPKNDWNELQKFM--IHNQNENVVVVAQTGYGKTEAGLLWI-------GNNKGFFTLPL 295 Query: 347 QATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQW 406 + N++ R++ + L H + R ++ + K + + + + Sbjct: 296 RVAINSIFNRVKNQIVIEKLENRIGLLHSDFREIYIEDTKKKEKNNLEKMDNDDL----F 351 Query: 407 LSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLE 466 + K + VCTIDQ+ V ++ + S +++DE+ Y T + L Sbjct: 352 MYIDKTKQLSLPLTVCTIDQLFDFVFRAPGFELKVATLSYSKVVIDEIQMYSTDLLAYLI 411 Query: 467 AVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFD 526 LK D GG +++ATLP L + +E + P I N +R + Sbjct: 412 YGLKYITDFGGKFAIMTATLPGIIIDLL------KKEEIEFVTTEPFI-----NDKKRHN 460 Query: 527 LLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQR 586 + + + F I ++ ++CN V ++ Y+ Sbjct: 461 IKVLKDTINAEF----------------------IKENYKDNKILVVCNTVKKSKQMYEN 498 Query: 587 LKELNNTQVDIDLFHARFTLNDRREKENRVI-----SNFGKNGKRNVGR-------ILVA 634 LK L +++L H+RF DR +KE + F ++ K+ I + Sbjct: 499 LKNLGIECKELNLLHSRFIKKDRAKKEKEISEFANPKRFKQSVKKERKSKNIFENGIWIG 558 Query: 635 TQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYG 694 TQVVE SLD+DFD LIT+ + LFQR+GR +R+ R E + + G Sbjct: 559 TQVVEASLDLDFDILITELSDLNGLFQRMGRCYRN----REILDEKYNCYVFTEECSGIK 614 Query: 695 RHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFE 754 + + + + ++++ + ++G L + +D +Y + + E+ G + Sbjct: 615 GSKAVI-DKEIHQKSKEALINIDG--LLTEKEKLELIDKVYSTESLKDTEYYGKLVKNIY 671 Query: 755 SAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQV 813 + + EY ++ + + R+ S ++P + K+ ++ + Sbjct: 672 -----------ALKNYIVEYEKTKSE--VQKIFRNIA-SRDIIPKIIYQENKEEIEKNI 716 >UniRef50_A3DHS2 CRISPR-associated helicase Cas3 n=3 Tax=Clostridium thermocellum RepID=A3DHS2_CLOTH Length = 750 Score = 322 bits (825), Expect = 4e-86, Method: Composition-based stats. Identities = 159/865 (18%), Positives = 287/865 (33%), Gaps = 181/865 (20%) Query: 9 HYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCW----WDQSVVLQNTFCRNEMLSKQRVK 64 Y+ K + + H V A+ + + + + Sbjct: 1 MYFAKPVDNYEGTYEYH--------VKRCAEILEFEIRSKYPAFKRILS-SYGFDVEDFI 51 Query: 65 AWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQ 124 + + HD GK + FQ + + F H + Sbjct: 52 EKMKTAVVFHDFGKLNPYFQE----------YMKRKIEKKKLSGIKHFRHEVLSCLFLMS 101 Query: 125 DSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYA 184 + S+++ + + AV GHH KS + Sbjct: 102 NEKSKEAYFPYH----------------ILAVLGHH---KMLSSDLKSFERERVWQDRWP 142 Query: 185 AQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLA---------------------- 222 + A + + + + G S + L A Sbjct: 143 EISEDAVKHAMEIASEFGIKVDGRSGPQGKSANNYLNALLKLALMLYEKDREKLKVVYSV 202 Query: 223 --GFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCY 280 G DW+ S + L G+ +N Sbjct: 203 SKGLLHNCDWIASSNLDYNRVC---------------------------LIGVSAN-DIE 234 Query: 281 EGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSV 340 + + L+ + + A G V APTGSGKTE AL +A + Sbjct: 235 KKLKEKLEKENKKYVRREFHSICANAVGDVVAIAPTGSGKTEAALMWALN----SETTKI 290 Query: 341 IFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAW 400 IF +PT T+N++ R+ +H F + L+H + ++ +E+ Sbjct: 291 IFLMPTMVTSNSLYERLS---THYFPKESCGLSHSGAE----------TYFYKKSKEDDT 337 Query: 401 VQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTY 460 W ++K F+ + V T+DQVL + + + S +I DE+HAYD Y Sbjct: 338 ENDYDWSQILHQKAFIPAVMVSTVDQVLSTEFHTGLWNQKEYALVGSSVIFDEIHAYDGY 397 Query: 461 MNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVN 520 GL+ V+K GG V+L+SAT+P + LD V Sbjct: 398 TIGLITGVIKKIKKYGGRVMLMSATMPKFLRNHFLDLLDSKCLVVAE------------- 444 Query: 521 GAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVA 580 +L+ E I E+++ + G +V LI N V+ A Sbjct: 445 -----ELMERASNEWAYLDTDLEGI-----------REKVLKEVSEGKKVALIVNDVETA 488 Query: 581 QVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQ 640 + K + D+ H+ FT+ DR+EKE R+ S G N R++++TQV+E Sbjct: 489 KK---EYKYYSKKGFDVLCLHSEFTMKDRQEKEGRLTSKEG-----NPYRLVISTQVIEV 540 Query: 641 SLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIY 700 SLDV FD + ++ P D L QR GR +RH + P +++Y Sbjct: 541 SLDVSFDVMFSECAPIDSLVQRAGRCNRHGL------INFGRFYVFNPSD---TAVKYVY 591 Query: 701 -SNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECE 759 ++ +T + I + +G ++ +Y+ + + ++ G+D E Sbjct: 592 RKQKDILDKTVEVIRKNSGR--LTEKQIMAMVEEVYEGFNLYDEDY-KLGIDIVRDIEQR 648 Query: 760 KRFKARKVLQWAEEYSLQDNDETILAVTRDGEMS-LPLLPYVQTSSGKQLLDGQVYEDLS 818 F + + E TR ++ +P++P + ++ E L Sbjct: 649 YNF-----------FDVNIFQEDENLSTRKFDVVKVPVIPADEYM--------EIVEKLF 689 Query: 819 HEQQYEALALNRVNVPFTWKRSFSE 843 + Y+ ++L + V + + + Sbjct: 690 ESKDYKMISLYEIPVSISKFKKYIR 714 >UniRef50_Q8REC9 ATP-dependent RNA helicase n=4 Tax=Fusobacterium RepID=Q8REC9_FUSNN Length = 812 Score = 319 bits (817), Expect = 3e-85, Method: Composition-based stats. Identities = 126/753 (16%), Positives = 260/753 (34%), Gaps = 95/753 (12%) Query: 74 HDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLG 133 HD GKF+++FQ + E+ ++N + + H + N + Sbjct: 54 HDSGKFNLKFQRRIEENIKRINGEKYNSKYLKFDKENEIEHNILSAFLINSQDFN----- 108 Query: 134 DFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREE 193 + + + +V HH D + +D Sbjct: 109 -----------SEKEYLAVLYSVIFHH----RYSDAISTINNQIFPNIEEILEDNLPN-- 151 Query: 194 WISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINAL 253 V+ P L+ D+ + L G D S + + + N L Sbjct: 152 --GVVTYEGDIPLELNFQDLNTVENIKLLGLLMKCDHSASGGYEIEYPNDFLEEALNNLL 209 Query: 254 RTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIE 313 + + D +Q + + Sbjct: 210 NEFKEK----------------------------DKSADWNDMQKFCKE--NSDKNIIAI 239 Query: 314 APTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASA-SHLFSSPNLIL 372 A TG GKTE + + + F LP + NAM R++ + + L Sbjct: 240 ADTGMGKTEGGFLW-------GGNNKIFFVLPLRTAINAMYKRVKLFVPKNKILEEKVGL 292 Query: 373 AHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVL 432 H NS + + K I ++ ++E + K + +CT DQ+ +L Sbjct: 293 LHSNS-LEYYLNNKKELVIDDKDEKEMDILEY----NKRGKHLSLPVTICTPDQIFNFIL 347 Query: 433 PVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQ 492 K + + S +I+DE+ YD + + + ++GG + +++AT P + Sbjct: 348 KYKGYESKLATLSYSKIILDEMQMYDASLLAAVIFGITKIIEMGGKIAIVTATFPPIIEY 407 Query: 493 KLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLP 552 L + P + + ++ I+ + + D + Sbjct: 408 FLNKYLMKGNKKAIKDLDKP--------EEVVEEPIFIKKKFTNNEKIRHNIVLIDDEIG 459 Query: 553 DLTMLERMIAAANAGA---QVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDR 609 +L + ++ +ICN + AQ Y +LKE ++ + I++ H+ F DR Sbjct: 460 VEQILWKFRKNRKENKKSNKILVICNTIKKAQEIYLKLKEEDDLKDKINMLHSNFIREDR 519 Query: 610 REKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRH 669 KE ++ FGK G I ++T +VE SLD+DFD+L T+ + LFQR GR +R Sbjct: 520 ENKEKEILD-FGKTEFDGEG-IWISTSLVEASLDIDFDYLFTELQDLNSLFQRFGRCNRK 577 Query: 670 HRKYRPAGFEIPVATILLPDGEGYGR---HEHIYSNVRVMWRTQQHIEELNGA----SLF 722 +K + I L + Y + ++ + + + +++ +E + Sbjct: 578 GKKL----VDEANCFIYLKIEDKYLKEKGSKYGFIDKDIYENSKKGLENYYEVVSKDEIE 633 Query: 723 FPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEY-SLQDNDE 781 Y + + Y +++E + + + ++ + + E+Y + ++DE Sbjct: 634 NSQDYSELFKN-YS-KQINEGDKIKLIEENLSFENLKESNFVDEFEKAYEKYQRILNSDE 691 Query: 782 TILAVTRDGE-MSLPLLPYVQTSSGKQLLDGQV 813 + + S+ ++PY ++ + + Sbjct: 692 NSQDALKLRDIQSVTVIPYDIYEENEENIKELI 724 >UniRef50_A6TQ84 Metal dependent phosphohydrolase n=2 Tax=Firmicutes RepID=A6TQ84_ALKMQ Length = 743 Score = 319 bits (817), Expect = 4e-85, Method: Composition-based stats. Identities = 142/815 (17%), Positives = 273/815 (33%), Gaps = 159/815 (19%) Query: 67 LLFFIAL-HDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQD 125 +L+ L HD+GK +++FQ K + + HG L + N Sbjct: 41 ILYLACLYHDLGKMNLKFQDKIKGIK---------------KSEDEIPHGILSLAFINSK 85 Query: 126 SLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQD-KSRWEMPASLASYA 184 L ++ A+ HH + D K E+ + Sbjct: 86 ELKDKGFSK------------SDIKILAHAIAYHHEREFNYDHNDIKEEIELLKGEGIHF 133 Query: 185 AQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSL-LAGFCSLADWLGSWTTTNTFLFN 243 + DK + ++ F D S + + G N + Sbjct: 134 SYDKIEKISVKNLSAKYFSKDRIYQQEDEEMFLSYIKVKGLL------------NRIDYA 181 Query: 244 EDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDAL 303 DI + + +D + + + +LQ + L Sbjct: 182 SSGDIDIEVKNNFLNNCLRDLMKEWQEKNSNAEW----------------NELQRHM--L 223 Query: 304 PVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASH 363 + A TG GKTE L + + F LP + NAM R+ Sbjct: 224 FHKNDNVIAIAETGMGKTEAGLLWI-------GDNKGFFTLPLKTAINAMYDRIALDMIK 276 Query: 364 LFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCT 423 + L H ++ +L + ++ I E + K + +CT Sbjct: 277 EGYENKIGLLHSDTYSEYLNRDGEAIDIDEY--------------YNKTKQLSLPLTICT 322 Query: 424 IDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLS 483 +DQ+ V + + + + +++DEV Y + L L +GG +L+ Sbjct: 323 LDQIFDFVYRYRGFESKLATLAYAKVVIDEVQMYSADLLAYLIIGLSYITKIGGKFAILT 382 Query: 484 ATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPE 543 ATLP L + P+ I+ Sbjct: 383 ATLPDLVLDLL---------------------------QEEEITFVSPKTFTNNQRIRHS 415 Query: 544 PICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHAR 603 L + L T+L+ +V +ICN V AQ Y+ LK+ + +++LFH+ Sbjct: 416 VKVLNEQLNHNTVLD-----LYNENKVLVICNTVKEAQRMYKLLKDSKKIR-NLNLFHSN 469 Query: 604 FTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRL 663 F DR+EKE +++ G + G + V TQVVE SLD+DFD LIT+ + LFQR+ Sbjct: 470 FIKKDRKEKEKQILE-IGHRESKQYG-VWVTTQVVEASLDIDFDILITELSDLNGLFQRM 527 Query: 664 GRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFF 723 GR +R R++ G+ V + G G + + ++ ++++ G Sbjct: 528 GRCYR-GREWEKDGYNCYVFDGGAEECSGIGY----VIDEDIFQLSKTALQDVGGE--LK 580 Query: 724 PDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETI 783 + + S+Y + ++ + + E++ N+ + Sbjct: 581 EEKKMNLVQSLYTTENLKATKYYKQIKSNID------------YVTSIEDHEKSKNE--V 626 Query: 784 LAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSE 843 + R+ S+ ++P ++ + + +++S+ Sbjct: 627 KKIFRNIH-SITVIPREVYEENQEAISEYIL---------------------ILSKNYSK 664 Query: 844 VVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEG 878 ++DE+ L K+++ ++ + Y +G Sbjct: 665 LMDEEERRVLRTKKSVIRSRLMEFTMSVPYHRGQG 699 >UniRef50_C1QDM1 CRISPR-associated helicase Cas3/CRISPR-associated HD domain protein n=1 Tax=Brachyspira murdochii DSM 12563 RepID=C1QDM1_9SPIR Length = 764 Score = 319 bits (816), Expect = 5e-85, Method: Composition-based stats. Identities = 111/461 (24%), Positives = 189/461 (40%), Gaps = 69/461 (14%) Query: 291 YQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATA 350 ++P + Q + L ++ A TG GKTE AL +A + LP + + Sbjct: 235 FEPNECQKYM--LENKDKNIIVIASTGIGKTEGALLWA-------KKSKTFYTLPLKVSI 285 Query: 351 NAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQS 410 NA+ R++ + + + H +S + L + + ++ + Sbjct: 286 NAIYERIKN---NYYDKEKITFLHSDSINDMLDNDLSIDDVIDK--------------YN 328 Query: 411 NKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLK 470 K VCTIDQ+ V I + S LI+DE+ +Y + + LK Sbjct: 329 KSKKLSFPFTVCTIDQLFYFVFKSLGTEIFPAALKYSKLIIDEIQSYTPEITAFIIYGLK 388 Query: 471 AQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAH 530 D+GG +++AT P K+ + + N A Sbjct: 389 VINDIGGKFCIITATFPPIVKKLMEEN----------------------NINFEMPSKAF 426 Query: 531 PEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKEL 590 ++ SI+ I D D+ + +I +A +V +ICN V +Q Y LKE Sbjct: 427 LKKDKNNESIKRHFIKFID--EDIFNYDNIIKSA-ENKKVLVICNTVKHSQEVYNILKEY 483 Query: 591 NNTQVDIDLFHARFTLNDRREKENRVISNFGKNG---KRNVGRILVATQVVEQSLDVDFD 647 N +I+L H+RF + DR++KE+ + NF N + I ++TQ+VE SLD+DFD Sbjct: 484 NIK--NINLLHSRFLMKDRKKKEDDI-KNFAPNDISKREETYGIWISTQIVEASLDIDFD 540 Query: 648 WLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATIL-LPDGEGYGRHEHIYSNVRVM 706 L T AD L QR+GR++R R P I DG G + IY N ++ Sbjct: 541 ELHTDMSSADSLLQRMGRVYR----DRAYNKNEPNIFIYNTKDGYGSVYDKEIYDNSKMF 596 Query: 707 WRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVG 747 + +F + + +++ +YD+ + E ++ Sbjct: 597 L-------KYYDNKIFTEEDKQDFINKVYDEEILKESNYLK 630 >UniRef50_B3QT88 Metal dependent phosphohydrolase n=3 Tax=Bacteria RepID=B3QT88_CHLT3 Length = 723 Score = 318 bits (814), Expect = 7e-85, Method: Composition-based stats. Identities = 155/799 (19%), Positives = 278/799 (34%), Gaps = 161/799 (20%) Query: 15 SKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALH 74 +K + +H H L V VA+ ++ Q K + LH Sbjct: 10 AKGKPEETTLH---EHLLLVCNVAE-----------KIAIYSNMNPQIAKLGAI----LH 51 Query: 75 DIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGD 134 DIGK FQ + + P F H A ++ Sbjct: 52 DIGKTSTIFQERLTINKKPDTP---------------FRHEIASCFFL------------ 84 Query: 135 FFSFFDAAPHPYESWFPWVEAVTGHHGFI---LHSQDQDKSRWEMPASLASYAAQDKQAR 191 S FD HP +E + HH I + + + ++ + + Sbjct: 85 --SLFDKEIHP-----ALIEMIIAHHKSIENDAKRKGILDLNEDRDNTFLLHSKNWELWK 137 Query: 192 EEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLA-------DWLGSWTTTNTFLFNE 244 + + +L A +T +SI + +++A +C A +W G + F Sbjct: 138 SDALQLLSAFGITVRDISIEEAQASYDAVVA-YCEDAVRESGYSEWRGLLMAADHFASAL 196 Query: 245 DAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALP 304 +D +R + Q + R EL L E H Sbjct: 197 SGKTDDYLVRLFKQPKLDFYQRRHELYPLSLKNASSEKKH-------------------- 236 Query: 305 VAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHL 364 T++ A TG+GKT+ ++ V + LP QA+ NAM R++ + Sbjct: 237 -----TMVVASTGAGKTDFLF--------RRCKGRVFYTLPFQASINAMYKRVKKDLATD 283 Query: 365 FSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTI 424 ++ L H S+ A+ + +EE +Q + + V T Sbjct: 284 NPDMDIRLLHAASKI----------ALDGKSKEEKIIQGHVGAA----------VKVLTP 323 Query: 425 DQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSA 484 Q+ + I +I+DE+H Y ++ +++ +G ++ + +A Sbjct: 324 HQIAAIAFGTNGYEAMIMDIKGCDVILDEIHTYTEVTRAIVLKIIQVLKHLGCNIHIGTA 383 Query: 485 TLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEP 544 T+P +++D G T L + R I Sbjct: 384 TMPTLLYNRIIDLLGKET-------------------VSEIRLEDDELEQFNRHIIHK-- 422 Query: 545 ICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARF 604 + + E + A N +V ++CN V AQ Y +L+E+ + I L H+RF Sbjct: 423 -----IDNRESAAEIITQAINEQKKVLVVCNRVKAAQDEYSKLQEMFP-ETPILLIHSRF 476 Query: 605 TLNDRREKENRVI---SNFGKNG---KRNVGRILVATQVVEQSLDVDFDWLITQHCPADL 658 T DR EKE ++ + NG N I+V+TQVVE SLD+ FD ++T P D Sbjct: 477 TKGDRDEKERLLLGLDDDGNPNGNFNTSNKACIVVSTQVVEVSLDISFDVMVTDAAPLDA 536 Query: 659 LFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNG 718 L QR GR++R R G PV + P+ + + ++ V+ R+ + Sbjct: 537 LIQRFGRVNR-IRTKETIGTYKPVYVLPPPENKKEAKP----YDLEVINRSYDVLP---N 588 Query: 719 ASLFFPDAYRQWLDSIYDDAEM--DEPEWVGNGMDKFESAECEKRFKA--RKVLQWAEEY 774 + + ++ +D ++ + + E V K+ + KA ++L Sbjct: 589 GEVLEEKSLQEKIDHVFTEIDFLAIEEHSVFKETGKWRIDKLTHNSKAMLLELLDIDSVS 648 Query: 775 SLQDNDETILAVTRDGEMS 793 + + D+ + E Sbjct: 649 CILEADKETYMLANYEERY 667 >UniRef50_C5U6V4 CRISPR-associated helicase Cas3 n=3 Tax=Euryarchaeota RepID=C5U6V4_9EURY Length = 741 Score = 317 bits (813), Expect = 9e-85, Method: Composition-based stats. Identities = 156/863 (18%), Positives = 294/863 (34%), Gaps = 158/863 (18%) Query: 26 LLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQY 85 LL H + L++ F L+ + L + I LHDIGK FQ Sbjct: 14 LLECH-------VYATLNVMRSLKDNFFWVPELTNENFWELLFYAIVLHDIGKCATGFQ- 65 Query: 86 KSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHP 145 K ++W + H + F Sbjct: 66 KDPKNWG-------------------YRHEVLSTPFVE---------------FLDYGED 91 Query: 146 YESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTP 205 ++ A+ HH + + S+ Y + K+ E ++ F Sbjct: 92 EKNMIAL--AILTHH---KYIDELKNSQMLPRLYYGVYKNKIKELLENKGYLINFYFPRI 146 Query: 206 AGLSINDIPPDCSSLLAGFCSLADW---LGSWTTTNTFLFNEDAPSDINALRTYFQDRQQ 262 + F +W +G N L D F Sbjct: 147 EDWELRIFRKKLKK----FNLPKNWEEKIG-NYNFNELLDWYDENVREKKTELIFLKGLL 201 Query: 263 DASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTE 322 +A L +G S + + R+LQ + L +++APTG GKTE Sbjct: 202 NACDHLASAGEYSILTLPNLKERIFEKISNLRELQ---EKLLFIKRNAILKAPTGYGKTE 258 Query: 323 TALAYAWKLI---DQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRF 379 AL +++ + ++ + V + LP + + NAM R+++ L + L H +S++ Sbjct: 259 AALLWSYTNLDSVRKRYPNRVFYILPYKVSINAMYERLKSY---LPEGGMVALLHSSSQY 315 Query: 380 NHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFI 439 + R +T + + + V T Q++ + V + Sbjct: 316 YLYVSGYEYRRLT-----------------NLYRKIYSPMKVLTPFQIMKAFFGVGFYEM 358 Query: 440 RGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQAD-VGGSVILLSATLPMKQKQKLLDTY 498 + +S+LI DE+H Y+ + G++ +L + +++SATLP ++ +T Sbjct: 359 ELSELAKSLLIFDEIHVYEPNIIGIILGMLDILVNGYKAKALIMSATLPTFLEELFKETL 418 Query: 499 GLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLE 558 A+ R ++ + D++ +L + + Sbjct: 419 ----------------------KAEDVKFEKEDPDEFTRHRVRVVDGNVFDIIQNLELNK 456 Query: 559 R--MIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRV 616 + V ++CN VD A Y+ LK N + + L H RFT DR E V Sbjct: 457 NFFIFGEIKLEKPVLIVCNTVDRAIEVYKYLK---NKKFKVLLIHGRFTYGDRERLEKEV 513 Query: 617 ISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPA 676 N +V+TQV+E SLD+ F+ ++++ P D L QR GR++RH Sbjct: 514 RKNIEHYD------FIVSTQVIEVSLDISFNSILSEPAPLDALIQRFGRVNRH------- 560 Query: 677 GFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYD 736 G++ V + EG R +++Y V T + ++E+N L + +LD +Y Sbjct: 561 GWKDGVIKDVYVLTEGSERDKYVYKEWMVKN-TLKVLQEINE-ELLRESKIQDYLDEVYK 618 Query: 737 DAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPL 796 D+ +K + + + + +N+E + + L + Sbjct: 619 DS------------NKIIKSIMSAKDTTIDIFNSLKPLYSSENEERFYELFQG----LEV 662 Query: 797 LPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWLEGK 856 +P +L+D + Y ++ V + + S E + + + K Sbjct: 663 IPIKYIGKVNELIDQRRYIEIYKYM---------VPLSISKYFSIKEKLGDVFRYEPKLK 713 Query: 857 QNLDGWVWQGNSIVITYTGDEGM 879 + Y + G+ Sbjct: 714 ---------SVIASLKYDSELGL 727 >UniRef50_B2RM87 Probable CRISPR-associated helicase Cas3 core n=1 Tax=Porphyromonas gingivalis ATCC 33277 RepID=B2RM87_PORG3 Length = 706 Score = 317 bits (812), Expect = 1e-84, Method: Composition-based stats. Identities = 137/738 (18%), Positives = 244/738 (33%), Gaps = 155/738 (21%) Query: 7 ICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAW 66 H + KS + L+ H DVA A+ LS + Sbjct: 4 YEHIFAKSDGT--------PLLQHLQDVAKAAEVMAQHW-----------GLSTDMARKG 44 Query: 67 LLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDS 126 LHDIGK FQ L F H A +++ + Sbjct: 45 ----AHLHDIGKASPIFQS--------------RLKAEDNLGGDVFRHEIASIFFIS--- 83 Query: 127 LSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFIL---HSQDQDKSRWEMPASLASY 183 D +E + HH I + Sbjct: 84 ----------LLPDEVDRR-----AIIEMIAAHHKSICNDSRELGLLDLDENESRCFKLH 128 Query: 184 AAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSL----ADWLGSWTTTNT 239 + +Q +E + +L L +++++ + + SL + W G + Sbjct: 129 SKGFEQWSQEALGILHELGWETHPITMDEARSNYQEAVDYCSSLGRNCSQWKGLLMAADH 188 Query: 240 FLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVL 299 F + D ++ + + + + + L +L Sbjct: 189 FASSLDGQTEDTLRKLF----------------------VTPDLSYYRNRRSELYPLSLL 226 Query: 300 VDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEA 359 T++ APTG+GKT+ L ++ V + LP QA+ NAM R++A Sbjct: 227 SADDERQH--TLVTAPTGAGKTDFLL--------RRCRGRVFYTLPFQASINAMYDRLKA 276 Query: 360 SASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQI 419 + + A + N ++ I SR + I Sbjct: 277 DLRDTDAQIYPLHAASILKLNGGYERILSRHVG------------------------ASI 312 Query: 420 GVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSV 479 V T Q+ +K + L I +I+DE+H Y ++ +++ +G + Sbjct: 313 KVLTPHQIAALAFGLKGYEVTALDIRGCDVILDEIHTYRKETQAMVLKIVEILVALGCRI 372 Query: 480 ILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFS 539 + +AT+P LL G T E + P+++ F Sbjct: 373 HIGTATMPTDLYTGLLRLLGGETAVYE---------------------VKLPKEVLKGF- 410 Query: 540 IQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDL 599 I A + D+ + + A ++ ++CN V AQ YQ + + L Sbjct: 411 -DRHTIHKAGSMEDVEPV--IQKAIEQSQKILMVCNQVKRAQQLYQEVVGKYPA-IPTLL 466 Query: 600 FHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLL 659 H+RF R + E + + + I+V+TQVVE SLD+ FD ++T+ P D L Sbjct: 467 IHSRFKRGHRAQLELELKERYNQC---QGPCIVVSTQVVEVSLDISFDMMLTECAPIDAL 523 Query: 660 FQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGA 719 QR GR++R R G P+ I P+ E E + + ++ R+ + Sbjct: 524 IQRFGRINRK-RSLETIGQTKPIYVIAPPENEK----EALPYELEILQRSYSSLP---HC 575 Query: 720 SLFFPDAYRQWLDSIYDD 737 + +Q LD++Y + Sbjct: 576 EVLHEADVQQLLDAVYPE 593 >UniRef50_B0MFZ6 Putative uncharacterized protein n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0MFZ6_9FIRM Length = 755 Score = 316 bits (810), Expect = 2e-84, Method: Composition-based stats. Identities = 132/777 (16%), Positives = 265/777 (34%), Gaps = 151/777 (19%) Query: 74 HDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLG 133 HD GK + FQ + LK NP ++ H +++ Sbjct: 50 HDDGKANKEFQKRVRNGKLKFNPE------------KEVPHNILSIFYL----------- 86 Query: 134 DFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREE 193 D + ++ + YE + A+ HH + + + R + + L + E Sbjct: 87 DPSFYLHSSKYQYEDFMRVACAILYHHDYCEEWKVLREKRDLIDSLLLDEY------KHE 140 Query: 194 WISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINAL 253 + E + + P+ + LL G D+ S + Sbjct: 141 FDDENELVGIYPSD--------PQTILLKGLLHRCDYSASGNYQVEYP------------ 180 Query: 254 RTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIE 313 + + ++ S +LQ + Sbjct: 181 NDFLIKGLDQMMQAWKVKNPKSKW----------------NELQEFCIEHREDD--IIAL 222 Query: 314 APTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRME-ASASHLFSSPNLIL 372 APTG GKTE L + + F LP + N++ R++ L L Sbjct: 223 APTGMGKTEAGLHWI-------GDNKGFFVLPVRVAINSIYDRVKNDILKEEKLHERLGL 275 Query: 373 AHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVL 432 H + ++ S + E + K+ + + T+DQ+ + Sbjct: 276 LHSEAL--EYYREHLSNSEELDIFEYS----------DRGKILSLPLNISTLDQLFGFIF 323 Query: 433 PVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQ 492 K ++ + + S +++DE+ YD + L L+ GG + +++ATL K Sbjct: 324 GYKGYEMKLVTLAYSKIVIDEIQMYDAELLAYLVFGLRKIHQFGGKIAIVTATLSPFLKD 383 Query: 493 KLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLP 552 L G+ + N R + E L Sbjct: 384 ILRRDTGIE-----------FKEQQFSNNLMRHSIKVKQESLSA---------------E 417 Query: 553 DLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREK 612 D+ + N ++ ++CN + AQ Y LKE + +++++FH+RFT NDR++ Sbjct: 418 DIIQCYKKNKMLNHSNKILVVCNTIRKAQEMYDELKE-ADIDLNLNVFHSRFTRNDRKQL 476 Query: 613 ENRVISNFGKNGKRNV-------GRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGR 665 E+ + FGK I +AT VVE SLD+DFD+L T+ + LFQR+GR Sbjct: 477 ESEI-KEFGKTYSDEKQGVLDSRDGIWIATSVVEVSLDIDFDYLFTELSELNALFQRMGR 535 Query: 666 LHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPD 725 +R +K + + DG+ R + + + ++ + + +G + Sbjct: 536 CNRKGKK----DIDEYNCFVYC-DGKDVKRGRKGFLDAVLYTQSMKALSNCDG--PISEE 588 Query: 726 AYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILA 785 ++ + + E +++ + F + + D ++ + Sbjct: 589 DKLALIEKYFTTEAVSESDYLKEYNETFNKFKI--------------GVKVSDGEQDLRN 634 Query: 786 VTRDGEMSLPLLPYVQTSSGKQLLDG---QVYEDLSHEQQYEALALNRVNVPFTWKR 839 + S ++P K+ ++G + + ++ + L +++ + WKR Sbjct: 635 I-----FSQNIVPKSVYLDYKESIEGLQKNLMDVEKQIKEEKKLGKDKLILNNLWKR 686 >UniRef50_O57915 Putative uncharacterized protein PH0176 n=1 Tax=Pyrococcus horikoshii RepID=O57915_PYRHO Length = 690 Score = 316 bits (810), Expect = 2e-84, Method: Composition-based stats. Identities = 179/801 (22%), Positives = 303/801 (37%), Gaps = 184/801 (22%) Query: 27 LIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYK 86 L H L+ +A+ ++ + +L + LHD+GK D RFQ K Sbjct: 21 LYEHSLNAKRIAERILERINY------------PSEARDCILMHVFLHDVGKLDDRFQEK 68 Query: 87 SAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPY 146 + R H G+ ++ E + Sbjct: 69 L------------------RKGGRAPPHAFLGVELASRFLNCESPFRE------------ 98 Query: 147 ESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPA 206 + +T HH + QD+ + +L + + + +F + Sbjct: 99 ---IALLSILT-HHSDFHEALYQDE--IDRDEALIIDGKVVSSPADLVYELRDEIFYKLS 152 Query: 207 GLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASR 266 + + SL G L+DWL S + + +Y+ R Sbjct: 153 QSKNAVMLRNLYSLFNGVLRLSDWLESAS---------------LDVGSYYTSGSFVRDR 197 Query: 267 VLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALA 326 V+ G +S+K G++PR Q + + G ++ PTG GKTET+L Sbjct: 198 VI---GYLSSK------------GWKPRDYQGFI--MGKGSGYFLL--PTGDGKTETSLL 238 Query: 327 YAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSI 386 + VI+ LPT T AM R E +F N+ HG F L++ Sbjct: 239 AIA------DSPKVIYTLPTITTVEAMRKRFEE----MFGKDNVSFGHGM-LFYSLYKEG 287 Query: 387 KSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGR 446 K + + + I V TIDQVL++ + +R L + Sbjct: 288 KLSE------------------RLINRYAMKGIHVSTIDQVLLAFINYFKFPLRELSLRG 329 Query: 447 SVLIVDEVHAYDTYMNGLLEAVLKAQAD-VGGSVILLSATLPMKQKQKLLDTYGLHTDPV 505 S LIVDE+H+Y Y L+ L+ + +G V++ SAT+P ++KL + P Sbjct: 330 SHLIVDEIHSYTPYTLSLILEGLRYAVNYLGSKVVVTSATMPSLLREKLEEVGLKELIPF 389 Query: 506 ENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAAN 565 E + + R + DL M E + + Sbjct: 390 EK--------------------VKRRYESKRRVRVWFR---------DLPMFEDIDSIIR 420 Query: 566 AGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGK 625 +V +I N V A+ Y+ LK+ + D+ LFH+RFT+ D+ EK V Sbjct: 421 EKGKVLVITNTVTRAREIYEELKKR---RDDVYLFHSRFTVRDKEEKMRLV--------N 469 Query: 626 RNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATI 685 ILVATQVVE SLD+D+D L T+ P D L QR GR++R G + A + Sbjct: 470 EISSGILVATQVVEVSLDIDYDTLYTEVAPIDSLIQRFGRVNRR-------GMKEGRAYV 522 Query: 686 LLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEW 745 +G+ + ++ + R + + ++EL A + + DS Y++ Sbjct: 523 YAVEGKRF----YLPYSKRSVEASLSMVKELEEAKNEL--DFLRLNDSFYEEI------- 569 Query: 746 VGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSG 805 D++ES E +K++ R+ L+ + + TRD MSLP +P ++ Sbjct: 570 ----WDEYES-ELKKKYLERQALRTIHRFRKES-----WLSTRDTFMSLPAIPLKFWNNV 619 Query: 806 KQLLDGQVYEDLSHEQQYEAL 826 +L + ++DL +++ E + Sbjct: 620 VEL--AERWDDLGEKEKAEGM 638 >UniRef50_B1I4M4 CRISPR-associated helicase Cas3 n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I4M4_DESAP Length = 795 Score = 316 bits (809), Expect = 3e-84, Method: Composition-based stats. Identities = 183/807 (22%), Positives = 294/807 (36%), Gaps = 122/807 (15%) Query: 9 HYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSK-QRVKAWL 67 H W KS + L+ H V L + LS+ R + + Sbjct: 10 HIWAKSRVGKATSGET--LVSH-------TQRVLANVVALHARMPELDQLSQMPRFWSRM 60 Query: 68 LFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSL 127 LHD+GK FQ L+ N P F H + Sbjct: 61 ALAAVLHDVGKCAGGFQK-----MLRGNGEFP------------FRHEVLSAAFLP---- 99 Query: 128 SEQSLGDFFSFFDAAPHPYESWFPWVEA-VTGHH-GFILHSQDQDKSR-WEMPASLASYA 184 D PH PWV A + HH F + +D WE P S Sbjct: 100 ---------WLLDNDPHQD---LPWVAAGILSHHKDFSILERDFPPGCDWEEPPLSDSLE 147 Query: 185 AQDKQAREEWISVLEALFLTPAGLSINDIPPDCS---------------SLLAGFCSLAD 229 EE+ + + L + S S GF A Sbjct: 148 QVALDLDEEFFHLAPKMVLYGLLPLLKGCLLLASNERFILPASDGTFDRSTFPGFARRA- 206 Query: 230 WLGSWTTTNTFLFNEDAPSDINALRTY------FQDRQQDASRVLELSGLVSNKRCYEGV 283 L ++ L EDA S + D A + +++ V Sbjct: 207 -LDAYAQLVVRLRKEDARSSAALAGRFTRGVLILADHAGSAWQAFAKLESLASPAIMARV 265 Query: 284 HALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIAD-SVIF 342 L ++ PG V+ APTGSGKTE AL +A Q + + + + Sbjct: 266 LDLPPPAKTGDEVYAHQTHASETPGCAVLVAPTGSGKTEAALLWAAANGRQTVGNPPLFY 325 Query: 343 ALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQ 402 LP QA+ NAM +R+ F ++L H + L++ + R T EA Q Sbjct: 326 VLPYQASLNAMRSRL----GERFGDDRVVLQHSRA-LQALYRQLLDRGYT---PGEAKNQ 377 Query: 403 CCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMN 462 + ++ ++ + + + T Q+L ++ ++ DE+HAYD Sbjct: 378 AEREINLG--RLHVAPVRILTPYQLLRGAFQLRGHEAIWTDCAGGRIVFDEIHAYDPSRL 435 Query: 463 GLLEAVLK-AQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNG 521 G++ A+L+ D+ +V+++SATLP K+ L + T + AY Sbjct: 436 GMILALLEHMVRDLTVNVLVMSATLPSILKEILNEKLNRPTPIIATTKAYEA-------- 487 Query: 522 AQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQ 581 F + AD+L + T+LE + A G V ++ V AQ Sbjct: 488 ----------------FRRHRLCLKAADLLDEETILE-IHQKARRGLAVMVVATTVQRAQ 530 Query: 582 VCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKN--GKRNVGRILVATQVVE 639 ++ L ++N ++ ++L H +F DR +KE ++ GKR ILVATQVVE Sbjct: 531 QMWETLNAVSNGEIPVELLHGKFCSRDRFKKEQWLLQQVSTRNAGKRKNPLILVATQVVE 590 Query: 640 QSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHI 699 SLDVDFD L T P + L QR GR++R R+YR +L +G + Sbjct: 591 VSLDVDFDVLFTDPAPLEALLQRFGRVNR-GRRYRERD-----VIVLTEIPKGCP----V 640 Query: 700 YSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMD-EPEWVGNGMDKFESAEC 758 YS ++ + Q + L+G + + LD++Y + D + V + F+S Sbjct: 641 YSKT-LIEKALQQLVPLDG-HMVDEAKIQLLLDAVYSGSVSDWWRDEVLKAAEAFKSEVL 698 Query: 759 EKRFKARKVLQWAEEY-SLQDNDETIL 784 + + E++ + D E + Sbjct: 699 SNLYAFETDERLEEKFCEMFDGQEVLP 725 >UniRef50_C1DUL9 Crispr-associated helicase Cas3 n=3 Tax=Hydrogenothermaceae RepID=C1DUL9_SULAA Length = 755 Score = 315 bits (807), Expect = 5e-84, Method: Composition-based stats. Identities = 138/774 (17%), Positives = 272/774 (35%), Gaps = 124/774 (16%) Query: 39 DCWWDQSVVLQNTFCRNEMLSKQRVKAWLL---FFIAL------HDIGKFDIRFQYKSAE 89 + + + L R + + + +++ F+ AL HD+GK FQ K Sbjct: 18 ETLREHTENLLEELERIKKIYGKELESIGANEDFWNALKIACLFHDLGKISSHFQRKI-- 75 Query: 90 SWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESW 149 + +G + H + S++ +FF + Sbjct: 76 -KRYIGEDVKISSGTKEE----IPHNYLSGIFLFNSSIANVLNNEFFDY----------- 119 Query: 150 FPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLS 209 + +V HH E+ S+ + K+ + + +L L LS Sbjct: 120 --VLYSVLFHH------------NREISFSVDYMDSVFKRDLKPKLCLLSWLSKFNIDLS 165 Query: 210 INDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRT---YFQDRQQDASR 266 + D + S+ + ++ + I L + D A Sbjct: 166 NINEESPYFVY--------DEIKSYMNNSDKKISQIKKNKIFILFKGLLHRLDHSASAHL 217 Query: 267 VLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALA 326 +E + + + + DN + Q L ++ A TG GKTE A+ Sbjct: 218 PVEENRIHNVDEKLISYLSKKDNFKGLKPFQEKAKELRNKN--VLLTASTGIGKTEFAVN 275 Query: 327 YAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSI 386 + D + LP + + NAM R + + L H ++ F + Sbjct: 276 WI-------GEDKAFYTLPVRVSVNAMYDRFVSIFES--DKEKIGLLHSDALFYGM---- 322 Query: 387 KSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGR 446 + + +E + + F I + T DQ+ SVL + Sbjct: 323 ----ESNETIDEFLSLEEHIIRTQTSRQFSMPITITTADQLFTSVLKYPGYEKIYATLMY 378 Query: 447 SVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVE 506 S +++DE +Y ++ L+ A GG +SAT+ + L D Sbjct: 379 SKVVLDEPQSYSPDTLAIIIKGLQEIAYYGGKFCFMSATIHPFINEYLKD---------- 428 Query: 507 NNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANA 566 E+L P F+ + + + + + +I+ N Sbjct: 429 -----------------------FVEELDPVFNSEKKHKIKLENRTIDELSKEIISQFNQ 465 Query: 567 GAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKR 626 G +V +I N V AQ Y+ LKE+ N +++ L H+ F DR EKE ++ S Sbjct: 466 GKKVLVITNTVKKAQELYKILKEIEN--LNVKLLHSLFIQIDRNEKEKQIKS-------P 516 Query: 627 NVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATIL 686 I ++TQ+VE SLD+D+D + + D L QR+GR++R + + I Sbjct: 517 TEPVIWISTQLVEASLDIDYDIMFAEISTLDSLIQRMGRVYRKQGRI-INESDNANIVIA 575 Query: 687 LPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWV 746 + G+ IY+N ++ T + +EE N L + + + +Y+ ++ + Sbjct: 576 TKEPSDKGK---IYNN-EIISFTLEALEEFNNKILSDEEK-QNLMKKVYEIEKIKNTSFY 630 Query: 747 GNGMDKFE----SAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPL 796 N + E + + + +A+++ + ++ +E + E ++ + Sbjct: 631 KNFIKNMELLNAGFKTDTKGEAQQLFRGILNINVI-PEEVYQENLDEIEKAIEI 683 >UniRef50_B1I5P0 Metal dependent phosphohydrolase n=2 Tax=Clostridia RepID=B1I5P0_DESAP Length = 729 Score = 314 bits (804), Expect = 1e-83, Method: Composition-based stats. Identities = 200/831 (24%), Positives = 305/831 (36%), Gaps = 165/831 (19%) Query: 26 LLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQY 85 L+ H +V +Q +L L K+ + A A HD+GK FQ Sbjct: 13 PLLAHLKEVT-------EQGKILARHLGLPPALEKRALLA-----CAFHDVGKATRSFQ- 59 Query: 86 KSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHP 145 + + + + H A L + +L A+P Sbjct: 60 ----------------DYMRGKRGKGYPHALASLPF---------ALAAELYTLQASPLA 94 Query: 146 YESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTP 205 AV HH P Y A D + + LE + Sbjct: 95 -------AAAVLSHH------------SPLGPEVYRGYRAPDYVDEKNLAAFLEDVVAFL 135 Query: 206 AGLSINDIPPDCSSLLAGFCS------LAD----WLGSWTTTNTFLFNEDAPSDINALRT 255 GL P LL S L D G + LF E P D ++ Sbjct: 136 QGLGWEGNLPAVEKLLKLATSDGTPATLLDNSRFRFGEELISLRGLFKELPPIDFADIKA 195 Query: 256 YFQDRQQDASRVLELSG-LVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEA 314 Q AS +G L ++ + ++ + Q R Q + + A Sbjct: 196 VLQLADWVASSGKAQAGDLFLHQGRKLVLTSIKEKSIQLRPFQKKAGEMKRE--RLWLRA 253 Query: 315 PTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAH 374 PTG+GKTE L +A + +++ LPTQATANAM R++ ++ N+ LAH Sbjct: 254 PTGTGKTEALLLWA------GDTERLLYLLPTQATANAMWKRLK----KIYGEENVGLAH 303 Query: 375 GNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPV 434 G + + I + EE + W S VF + V T+DQ L++ L Sbjct: 304 GRAGY-----------ILRKELEEDPLDVRLWAS-----VFARPVVVGTLDQYLMAHLQG 347 Query: 435 KHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKL 494 +H IR R+ +++DE+H+YD Y GLL+ L + + L SATLP + L Sbjct: 348 RHWEIRRSLARRATVVLDEIHSYDPYTLGLLQEALAQEPP--ARLALASATLPEFLPELL 405 Query: 495 LDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDL 554 + LL E L R + P Sbjct: 406 ----------------------------GQGPLLEAEEPLWQRKRHELRLFVE----PVA 433 Query: 555 TMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKEN 614 + LE ++ G V +I N V AQ YQ L+E + Q + L H+RF DR +KE Sbjct: 434 SALEEALSFVRQGKTVLVIANTVKQAQEIYQALQEDGDYQ--VHLLHSRFAFRDRWKKEE 491 Query: 615 RVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYR 674 ++ GK G ILVATQ+VE SLD+ +D L T+ P D L QRLGR++R Sbjct: 492 QL-------GKTIPGTILVATQIVEVSLDISYDVLFTEVAPIDALVQRLGRVNRRGITPE 544 Query: 675 PAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSI 734 A I L +G E IY + W ++ + ++ + Q + + Sbjct: 545 GTTAPPAPAFIFLEWDKG---SEKIYGQEILTW-SRDILNDMPQHP--TDGEWVQATNRL 598 Query: 735 YDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILA--VTRDGEM 792 Y+ ++ E + R+V + + Y++ +DE + TR G++ Sbjct: 599 YEVQASSPS---------YQEDLREGQQTLREVQRISGCYTIDLSDEEMQKKFTTRKGQL 649 Query: 793 SLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSE 843 S+ +LP L E H + E L V VP W +FS Sbjct: 650 SVEVLPQALKDEAFALR-----ERGEHWRLVELL----VPVPVYWLPAFSH 691 >UniRef50_O66694 Putative uncharacterized protein n=2 Tax=Aquificaceae RepID=O66694_AQUAE Length = 729 Score = 313 bits (802), Expect = 2e-83, Method: Composition-based stats. Identities = 168/887 (18%), Positives = 284/887 (32%), Gaps = 187/887 (21%) Query: 11 WGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCR-NEMLSKQRVKAWLLF 69 W KS + + H D +L+N F E + + L Sbjct: 13 WAKSDGTTIRE--------H-------TDTLLKNLSILKNLFGEKIEEACPEDFRELL-- 55 Query: 70 FIAL------HDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFN 123 + AL HD GK FQ K N + + H + Sbjct: 56 WKALELSCEYHDYGKLHCFFQKKVGNK-----------NWKVLKGIPEVRHNLLSPAFVE 104 Query: 124 QDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRW--EMPASLA 181 + E+ V+ V HH + ++ K E S Sbjct: 105 CE--------------------DENLKLLVQKVVLHHHEVPDQFEKAKEVLIKEFGFSEG 144 Query: 182 SYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFL 241 DK EE LE + L ++ +L+ G D S + + Sbjct: 145 KAKELDKLIGEE-ERFLERIALKKFKKRNSESLKKFYTLVKGLLLRID-HASSNKHLSEM 202 Query: 242 FNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVD 301 + ++ Y + G Q +LQ V Sbjct: 203 EKGKLENPEKNVKDYLRK-----------------------------KGAQLNELQNYV- 232 Query: 302 ALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASA 361 L V+ APTG GKTE + D F LP + +AN + R A Sbjct: 233 -LENREECLVVVAPTGYGKTEAGFIFL--------KDKGFFTLPFRVSANGIYERARAVF 283 Query: 362 SHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGV 421 N+ L H +S + + E+ + + W + + K F + V Sbjct: 284 -----GENVGLLHSSSLIELMKK--------EEDELDTNTFEGIWKNYQHSKSFAYPLTV 330 Query: 422 CTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVIL 481 CT DQ++ V + S +++DE+ Y Y + L+ D G ++ Sbjct: 331 CTPDQIMPFVFKFSGYEKYLALLSYSRIVIDELQVYAPYTMAFIVKALEVIKDFGSKFMV 390 Query: 482 LSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQ 541 ++AT P ++ P + +L PR +++ Sbjct: 391 MTATFPEFLRRFF------------EKMEIPFKEF---------------PELKPRHNVK 423 Query: 542 PEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFH 601 L D L + + +I + + +V +I N V AQ L + + H Sbjct: 424 L----LEDTLGSESSIN-LIRSLSEEGKVLVIVNTVRKAQELSLLL--------NAPVLH 470 Query: 602 ARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQ 661 +RF R +KE + F K + V TQ+ E SLD+D D+L+T+ D L Q Sbjct: 471 SRFLQKHRAKKEEEIKEFFSSGEK----GVWVTTQLAEVSLDLDADFLVTELSTIDSLIQ 526 Query: 662 RLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASL 721 R+GR +R K E P + + G G +Y ++ T++ + E Sbjct: 527 RMGRCNRKGIK----DIENPNVYVFTQEPSGKG---SVY-PKELLELTRKALTEGIWE-- 576 Query: 722 FFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDE 781 YD E E G + K + + K W SL+++ Sbjct: 577 -------------YDVKERAIKEVFGENIKKTKYYDQFKSALEYVEGFWRGSISLKESRH 623 Query: 782 TILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSF 841 + RD +SL ++PY +++L S + LA N + +T+ + Sbjct: 624 DAVQKFRDI-LSLNVIPYQ---FREEVLKVYKKWRESSDILERVLAFNELQS-YTFSYPY 678 Query: 842 SEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMTRVIPANPK 888 SE + +G + + W I Y + G +P+ Sbjct: 679 SEKLLREGKIKKASELQELNVFW----IKGDYDENLGFRISKEEDPE 721 >UniRef50_A5ILM5 CRISPR-associated helicase, Cas3 family n=4 Tax=Thermotogaceae RepID=A5ILM5_THEP1 Length = 763 Score = 312 bits (800), Expect = 3e-83, Method: Composition-based stats. Identities = 160/788 (20%), Positives = 273/788 (34%), Gaps = 163/788 (20%) Query: 74 HDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLG 133 HD+GK FQ K + P P H + + +++L E LG Sbjct: 44 HDLGKVIYAFQKK-------VGGDVPEDGIPD------IPHSFLSIAFIPENTLRE--LG 88 Query: 134 DFFSFFDAAPHPYESWFPWVEAVTGHH----------GFILHSQDQDKSRWEMPASLASY 183 + S ++ AV HH G S + R + Sbjct: 89 EGLS------------RIFLSAVLYHHWRETYLDYLFGRKKESVCKAYERLLEVGDEIVW 136 Query: 184 AAQDKQAREEWISVLEALFLTPAGLSIND----IPPDCSSLL------------------ 221 +++ I + + L + SI D PP SLL Sbjct: 137 LLREEMGDLCEIELNKPLCEYLSHNSIIDSGLVFPPHLISLLPSIILKELNIRDENYKRY 196 Query: 222 ---AGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKR 278 +G AD S+ T ++ + A + LE L + +R Sbjct: 197 IITSGTVMRADRFASYVET-----------------AGNKELLKKADKRLERDQLETVRR 239 Query: 279 CYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIAD 338 E + ++ L V+ APTG+GKTE AL ++ Sbjct: 240 YLERIS---------NKVWQLDLLKDCRGENIVLVAPTGAGKTEFALMWS--------KG 282 Query: 339 SVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEE 398 +F LP Q+ N M R++ F N+ L H ++ F S ++ E Sbjct: 283 KTLFTLPLQSATNMMYERVKNY----FGEENVGLLHSDAAVYLFFSSFLKNNFEDREGEV 338 Query: 399 AWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYD 458 + + F + T DQV S L + + S L++DE+ AY Sbjct: 339 LQIV-------EQSRFFSHPFVISTGDQVFPSALKYPGYEMIYSILANSYLVIDEIQAYS 391 Query: 459 TYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRG 518 ++ + +GG ++++ATLP + ++L Sbjct: 392 PEAAAIIVKTAEDVKQLGGHFLIMTATLPGFIRDEILK----------------RAELEE 435 Query: 519 VNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVD 578 N ++ + L ++ L +E+ + G +V ++ N V Sbjct: 436 KNIKDVYEDIPQGRLLRNLVKVEK----------SLDPVEKAVEFFKKGCRVLIVRNTVR 485 Query: 579 VAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVV 638 A Y++L E + D+ L H+R TL DRR E ++ ++ G + ILV+TQVV Sbjct: 486 NAIETYRQLVEKLGKE-DVLLIHSRMTLEDRRRIE-EILESYRP-GAKGRNIILVSTQVV 542 Query: 639 EQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRH-- 696 E S+D+DFD L+T PAD L QR+GR+ R R E P I E + Sbjct: 543 EASMDIDFDILLTDIAPADSLVQRMGRIFRK----REWTEEFPNTFIYADSNEKKRKELI 598 Query: 697 EHIYSNVRVMWRTQQHIE---ELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKF 753 +YS V+ T +E ++ + R+W++ Y ++ + Sbjct: 599 AGVYSE-DVVSATLNALEGMFDIEKPFKLDELSKRKWVEETYQALS-QGSNYLKKFRETL 656 Query: 754 ES----AECEKRFKARKVLQWAEEYSL------QDNDETILAVT------RDGEMSLPLL 797 + EK+ +A ++ + S+ +D + +V+ R L + Sbjct: 657 DVLDSGYSSEKKHEAHRIFRRVVSMSIVPENLKEDLKRELKSVSDYFDFRRVTAKYLVDV 716 Query: 798 PYVQTSSG 805 P SG Sbjct: 717 PLHHIKSG 724 >UniRef50_A7GQ88 CRISPR-associated helicase Cas3 n=1 Tax=Bacillus cytotoxicus NVH 391-98 RepID=A7GQ88_BACCN Length = 741 Score = 310 bits (793), Expect = 2e-82, Method: Composition-based stats. Identities = 151/789 (19%), Positives = 274/789 (34%), Gaps = 144/789 (18%) Query: 60 KQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGL 119 +R+ LL+ + HD GK FQ LN G Q + H Sbjct: 35 DERIWELLLYAVDYHDAGKAHEPFQ---------LNIRRALGEGVKLQRNLEVPHNYLSP 85 Query: 120 YWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPAS 179 + + S P + + ++A+ HH + D R + Sbjct: 86 FLLPESIFS---------------LPKKDYQALIQAIAYHHERDIEPNDT-LIRQALWQD 129 Query: 180 LASYAAQDKQAR--------EEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWL 231 L + + +++ +L L + D +L G D Sbjct: 130 LWPKMDEINKHLNINGANLEKKFNRILAQLHRRIKYSDNKENYVDY-VILKGLLHRIDHA 188 Query: 232 GSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGY 291 S A DI D +QD ++++ ++ E ++ Y Sbjct: 189 AS------------AHVDIEI------DAKQDFKKLVDA----GFQKIAEKKRVPVEEVY 226 Query: 292 QPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATAN 351 R LQ A +I A TG GKTE AL +A F LP + + N Sbjct: 227 --RDLQK--HAHKHRKENLIIVAQTGMGKTEAALLWASD-------SKTFFTLPLRVSIN 275 Query: 352 AMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSN 411 A+ R+ ++ N+ L H +S ++L +++ EE W + Sbjct: 276 ALFHRVYEKMNY----KNVGLLHSSS-MDYLTENL----------EEDWEVIAE-----Q 315 Query: 412 KKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKA 471 K F ++ TIDQ+L + + S +++DE+ AYD + +L L+ Sbjct: 316 SKHFSSKLLFTTIDQILKFPFLYRGYEKELATMAYSSVVIDEIQAYDPKIAAVLVRALEM 375 Query: 472 QADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHP 531 VGG +L++ATLP + L N + + F + Sbjct: 376 IYLVGGKFLLMTATLPSIYLETL--------------------NESDIISSDGFRVDTFI 415 Query: 532 EQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELN 591 + R I+ + D I ++ +I N V A Y ++KE + Sbjct: 416 DDCVIRHCIEVVEKPIVDDFEK-------IVDLGKQKKILVIANTVKRAMELYNKIKEYS 468 Query: 592 NTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLIT 651 + ++ +FH+ + R E ++ + + I + TQ+VE S+D+DFD L T Sbjct: 469 D---NVHVFHSMYIQKHRTLIEKELLLF---DENKEATGIWITTQLVEASIDIDFDVLFT 522 Query: 652 QHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQ 711 + D L QR GR +R + + P I D G +++Y + ++ ++ Sbjct: 523 EAATLDSLCQRFGRCYRRR---QYMMHQEPNVFIYAVDMSGV---KYVY-DEEILMKSLD 575 Query: 712 HIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWA 771 + N + + + +Y + E++ D E LQ Sbjct: 576 ILRPFN-RKILLESQKIELVSQLYSRENLKGTEFLKTFDDALEQ------------LQTF 622 Query: 772 EEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDG-QVYEDLSHEQQYEALALNR 830 E+Y+L D + RD + L ++P + L + ++ + Y +A Sbjct: 623 EDYTLSSKD--AQKLLRDIQAEL-VIPRNIYDENEHLFEQLKIVNKEERARLYREIAKLT 679 Query: 831 VNVPFTWKR 839 V++ R Sbjct: 680 VSLRKNRVR 688 >UniRef50_C0EXP0 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EXP0_9FIRM Length = 652 Score = 310 bits (793), Expect = 2e-82, Method: Composition-based stats. Identities = 133/748 (17%), Positives = 263/748 (35%), Gaps = 127/748 (16%) Query: 10 YWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLS--KQRVKAWL 67 YW KS K T L+ H + L+ + L ++ + L Sbjct: 6 YWAKSDKVTT-------LVIH--------------NAALREALDKLYELGYIEKEMYELL 44 Query: 68 LFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSL 127 HD+GK + FQ + L + + ++ H L++ + + + Sbjct: 45 KIACEYHDLGKINEIFQARMKNKKLHFD------------LEKEIPHNVLSLFFVDSERV 92 Query: 128 SEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQD 187 ++ + P +++ + A+ HH ++ D + L + QD Sbjct: 93 NKIN-----------PEDKKNYVRMLFAILYHH----YNSDLMRMVSSSKRQLENIFPQD 137 Query: 188 KQAREEWISVLEAL--FLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNED 245 A + + +L + + + + + + G D+ S F N+ Sbjct: 138 --AFPDIQDEIYSLPIGIEEEISEVIGLKDEKAVKMKGLLHKCDYAASGHYPIEFR-NDF 194 Query: 246 APSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPV 305 S + L + + + ++ + + + + + LQ Sbjct: 195 LLSGLEYLLMQWNNPADQEKQEIQSAEEFALSEQDKNENERATVDW--NSLQYFCKEKQN 252 Query: 306 APGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLF 365 ++ A TG GKTE L + F LP + NA+ R+ Sbjct: 253 QN--IIVVAQTGMGKTEAGLLWIGNH-------KGFFVLPIRTAINAIYNRLRKDMLVNS 303 Query: 366 S--SPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCT 423 + + H + ++ +G +E + + K F + + T Sbjct: 304 DKIDEQVGILHS--------EQLEYYTKNIEGSDEDIYEYVK-----RGKQFSLPLNIST 350 Query: 424 IDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLS 483 +DQ+ + ++ + S +++DE+ Y+ + L L+ +GG V +L+ Sbjct: 351 LDQLFDFIFQYPGYELKLATLSYSRIVIDEIQMYNAELLAYLIFGLEKIVKMGGKVAILT 410 Query: 484 ATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPE 543 ATLP K+ L + + ++ ++ + + Sbjct: 411 ATLPPFVKELLEQHLNI--------------------PKENQEVFIDDKKARHHIKVCDK 450 Query: 544 PICLADMLP-DLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVD---IDL 599 I D++ L E + + G ++ ++CN + AQ + + EL + D I + Sbjct: 451 KINAEDIVKLYLKNKEACKSNPHKGNKILVVCNKIKTAQKIFDDVNELIKAKYDKEEIHI 510 Query: 600 FHARFTLNDRREKENRVISNFGKNGKR-----NVGRILVATQVVEQSLDVDFDWLITQHC 654 FH+RF DR + E +I FG+ G + G I + T VVE SLD+DFD+L+T+ Sbjct: 511 FHSRFIKEDREKLEKEIIE-FGQTGNKSENVVEKGGIWITTSVVEASLDIDFDYLVTELQ 569 Query: 655 PADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGE---------GYGRHEHIYS--NV 703 L QR+GR +R K + FE L D G E +Y + Sbjct: 570 DLCSLLQRMGRCNRKGLK---SVFESNCYIYLQIDSADLIGKTKRTGRRGKEKVYGFIDA 626 Query: 704 RVMWRTQQHIEELNGASLFFPDAYRQWL 731 + +++ I E G + ++ L Sbjct: 627 TLYELSKKAISEHEG--ILTESQKQEML 652 >UniRef50_UPI0001BC6554 ATP-dependent RNA helicase n=3 Tax=Fusobacterium RepID=UPI0001BC6554 Length = 733 Score = 309 bits (790), Expect = 4e-82, Method: Composition-based stats. Identities = 140/789 (17%), Positives = 275/789 (34%), Gaps = 161/789 (20%) Query: 74 HDIGKFDIRFQYKS-AESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSL 132 HD+GK + FQ + ++ +K NP + H +Y Sbjct: 47 HDLGKMNEFFQKRVLSQRKIKFNPEL------------EVEHNILSIY------------ 82 Query: 133 GDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQARE 192 D + + + + AV HH + Q + + ++ L ++ + Sbjct: 83 -----MIDPKKYLKDEYHSILYAVLFHHRYSDVVQTMVERKKDIERLLQNFTS------- 130 Query: 193 EWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINA 252 + P GL I+ + + G D+ S + + Sbjct: 131 ---------YRLPMGLKISSLHTLTNQKTLGLLMKCDYAASGNYQIEYP--------NDF 173 Query: 253 LRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVI 312 L + L S+K G LQ + Sbjct: 174 LEEKLE--------------LWSSKL-----------GILWNDLQEFC--YSHKNESIIA 206 Query: 313 EAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRM-EASASHLFSSPNLI 371 A TG GKTE AL + F LP + NA+ R+ L Sbjct: 207 IADTGMGKTEAALRWI-------GNSKAFFTLPIRTAINAIYDRVSRDILERENLEERLS 259 Query: 372 LAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISV 431 L H S + + E + ++ + K + +CT DQ+ + Sbjct: 260 LLHSTSLEYY-----------AKNIAEEELDIFEYHQRG--KHLSLPLTICTADQIFNFI 306 Query: 432 LPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQK 491 L K ++ + S +++DE+ YD + + +K ++GG + +++AT P Sbjct: 307 LKYKGYEMKLATLSYSKVVLDEIQMYDPSLLAAIILGIKTILELGGKIGIVTATFPP--- 363 Query: 492 QKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADML 551 +++ P + ++ + N R +L+++ +++ + + Sbjct: 364 --IVEALMKKEIP---DFSFQKQIFHSKNNVIRHNLISYDKRMG------------TEEM 406 Query: 552 PDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRRE 611 DL + + I +N ++ ++CN + AQ Y L E + L H+RF DR Sbjct: 407 IDLFLRNKKIGKSN---KILVVCNTIKDAQAMYDTLLEQEELSPYLHLLHSRFIKEDRAR 463 Query: 612 KENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHR 671 KE +++ FGK + G I ++TQ+VE SLD+DFD+L T+ LFQR GR +R + Sbjct: 464 KEKEILA-FGKTEIKENG-IWISTQLVEASLDIDFDYLFTELQDLSSLFQRFGRCNRKGK 521 Query: 672 KYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEE---LNGASLFFPDAYR 728 K + + L EGY + S+ + + H+ L + Sbjct: 522 K----STKEANCYVYLKTEEGYLKEAG--SSYGFIDKVIYHLSREALLGHTGEISEELKT 575 Query: 729 QWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTR 788 +W++ ++++ ++ D E + L ++ T +TR Sbjct: 576 KWIEEFLSYEKLEQSSFLSEFRDAIEEYKNI----------------LNSSENTSEELTR 619 Query: 789 DGE-MSLPLLPY-------VQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRS 840 + ++ ++P + ++ L + E + + V VP + Sbjct: 620 LRDIQNVTVIPLPVYQKHEEEIRDLEENLKNSEMTKEEKLRFKEEIMKHTVTVPKYMLEN 679 Query: 841 FSEVVDEDG 849 + + + +DG Sbjct: 680 YKKAL-QDG 687 >UniRef50_C8W344 CRISPR-associated helicase Cas3 n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W344_DESAS Length = 744 Score = 309 bits (790), Expect = 4e-82, Method: Composition-based stats. Identities = 130/718 (18%), Positives = 252/718 (35%), Gaps = 137/718 (19%) Query: 66 WLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQD 125 L + HD+GK +FQ + + HG L + Sbjct: 42 LLHWACVYHDLGKLHFKFQDRIKGIKHHPG---------------EIPHGLLSLAMIDHK 86 Query: 126 SLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGF--ILHSQDQDKSRWEMPASLASY 183 +L + + +AV HH +++ +K + + AS+ Sbjct: 87 ALK------------NMGYDRNAIKLLYQAVAYHHDRKMPFQNEEIEKEFAGLYPNFASF 134 Query: 184 AAQDKQAREEWISVLEALFLTPAGLSINDIPPDCS---SLLAGFCSLADWLGSW----TT 236 + + + + + + + D +L G + D+ S T Sbjct: 135 EYDKLPEKLKIATEINQRYFSVNKRFYEERDKDLFFEFIMLEGLLNRMDYAASAGIPVET 194 Query: 237 TNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQL 296 N FL + ++ L +Q+ ++ + L Sbjct: 195 PNDFLS-----ASMDELMCSWQEVDENTNW---------------------------NDL 222 Query: 297 QVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTR 356 Q+ + P ++ A TG GKTE L + F LP ++ NA+ R Sbjct: 223 QIYMRNKPDKN--LIVIAQTGMGKTEAGLLWLGNA-------KGFFTLPLKSAINAIYKR 273 Query: 357 MEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFL 416 + + L H ++ +L EQG+++ + + +++ + Sbjct: 274 ISEKIVREKMDERVGLLHSDTYIKYL----------EQGEKDESISLDTYYTKT--RQLS 321 Query: 417 GQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVG 476 + +CT+DQ+ V + + + S +I+DEV Y + L L + Sbjct: 322 LPLTICTLDQLFNFVFRYRGFEQKLATLSYSKVIIDEVQMYSPELIAYLVLGLHYITRME 381 Query: 477 GSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPP 536 G +L+ATLP L + D++ P Q+ Sbjct: 382 GKFAILTATLPTLFLDLLREQ----------------------------DIIFEPAQIFT 413 Query: 537 RFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVD 596 I+ L + + +++ I+ G ++ +ICN + A Y +L ++ Q Sbjct: 414 NDIIRHSLKVLDEDINSKDIVD--ISKQYGGKKILVICNTIKSALKLYHQLAQVAGKQ-Q 470 Query: 597 IDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPA 656 + L H+ FT DR KE+ ++ GK G I VATQ+VE SLD+DFD L T+ Sbjct: 471 VWLLHSHFTKEDRSIKESHIME-MGKRENTQCG-IWVATQIVEASLDIDFDLLFTELSDL 528 Query: 657 DLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEEL 716 + LFQR+GR +R+ R E + G I + +V +++ + + Sbjct: 529 NGLFQRMGRCYRN----RILDMEYNCFVFTGGNKRCSGVGAFI--DKKVHNCSKESLVGI 582 Query: 717 NGASLFFPDAYRQWLDSIYDDA-------EMDEPEWVGNGMDKFESAECEKRFKARKV 767 +G + ++ +Y + E ++++E ++ + K R + Sbjct: 583 DG--IITEGQKIAMVEELYTKEKLSDYYRNIKENIDYVKSINEYEFSKTDVNNKFRSI 638 >UniRef50_D1JP52 Metal dependent phosphohydrolase n=2 Tax=Bacteroides RepID=D1JP52_9BACE Length = 719 Score = 308 bits (789), Expect = 6e-82, Method: Composition-based stats. Identities = 136/700 (19%), Positives = 250/700 (35%), Gaps = 129/700 (18%) Query: 42 WDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSL 101 + T R + + V+ + LHDIGK FQ L Sbjct: 24 LESVAFWAQTAARYAGMDENVVR--IGAL--LHDIGKASPFFQI--------------RL 65 Query: 102 NGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHG 161 + F H A L++ W ++ + HH Sbjct: 66 QVKKKPNEKVFRHEVASLFFLKLI-------------------DRSLWPEVIDMIIAHH- 105 Query: 162 FILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLL 221 S +D+S + Y ++ + +S + + G+ P S Sbjct: 106 ---KSVYKDRSCNGLLDLKEYYG--EENTFRDHVSGFSSWSIDAIGILRELNFPGVS--- 157 Query: 222 AGFCSLADWLGSWTTT-NTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCY 280 AD L S + + + + ++ + S K Sbjct: 158 ------ADSLLSEEDALEAYRYAIEHCRRKPKGWSKWKGLLMGVDHL--ASATEEFKERI 209 Query: 281 EGVHALLDNGY-----QPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQ 335 + ++ D G+ L ++ T ++APTG+GKT+ L ++ Sbjct: 210 PTLFSIPDVGFYNRQHPLYPLSQVLSEANKKH--TFVKAPTGAGKTDFLL--------KR 259 Query: 336 IADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQG 395 + + LP QA+ NAM R+ + + ++ L H SR + Sbjct: 260 CQGRIFYTLPFQASINAMYERIRRDLNGV--VEDVRLLHSMSRLVIEGEK---------- 307 Query: 396 QEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVH 455 W + + I V T Q+ L K + +I+DE+H Sbjct: 308 ---------AWEEKVIQDKIGASIKVLTPHQLASVSLGTKGYETLLFDLCGCDIILDEIH 358 Query: 456 AYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLIN 515 Y M ++ +++ +G + + +AT+P + +QK+LD G Sbjct: 359 TYSDIMQSIILTMIEVLVHIGCRIHVGTATMPSELEQKILDILG---------------- 402 Query: 516 WRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICN 575 + Q+ +LL+ R+ + + D L +L I ++ ++CN Sbjct: 403 ---RDQTQQVELLSSVLDSFNRYIVHK----VTDFYSVLPVLREAIE---NDQKILIVCN 452 Query: 576 LVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVAT 635 V AQ+ ++++ EL +VD L H+RF DR E + + K + I+V+T Sbjct: 453 RVRNAQILFEKIDELYP-EVDKMLIHSRFKRKDRNRLEKELQDIYNKVLQAC---IVVST 508 Query: 636 QVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGR 695 QVVE SLD+ FD +IT+ P D L QR GR++R RK + + I PD + Sbjct: 509 QVVEVSLDISFDMMITETAPIDALIQRFGRINRK-RKPKEERTLKHIYVIAPPDK----K 563 Query: 696 HEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIY 735 + + + ++ R+ + + SL + ++ +D +Y Sbjct: 564 EDCLPYSQEILQRSYDALPQ---DSLLEESSLQRLIDQVY 600 >UniRef50_B5IGN2 CRISPR-associated helicase Cas3 domain protein n=1 Tax=Aciduliprofundum boonei T469 RepID=B5IGN2_9EURY Length = 728 Score = 307 bits (787), Expect = 1e-81, Method: Composition-based stats. Identities = 167/753 (22%), Positives = 282/753 (37%), Gaps = 149/753 (19%) Query: 64 KAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFN 123 +A L ALHD+GK FQ + ++H A Sbjct: 41 RALLA--CALHDVGKATENFQKHIRGEKI------------------SYSHALAS---LP 77 Query: 124 QDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASY 183 + E+ L + +E F +V HH L S+ D + E P Sbjct: 78 ISMIIERELIK--------ANVFEEPFIVSTSVVSHH-APLTSRVFDIYKEEKPPKYY-- 126 Query: 184 AAQDKQAREEWISVLEALFLTPAG-LSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLF 242 +E +S L+ + ++ +I S+ W+ N +L+ Sbjct: 127 -------VDEILSFLDVISSKIGDAYNLREIAEKYKSM---------WI----NKNPYLY 166 Query: 243 NEDAPSDINALRTYFQDRQQDA--SRVLELSGLVSNKRCYEGV-----------HALLDN 289 + R + A +L + ++++ E + + Sbjct: 167 LNQVIRTSSHFRKLKNAIWEYATVKALLNSADWIASQNKKEVLVLSKTINEYVKQFMKKQ 226 Query: 290 GYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQAT 349 + R+ Q + L +++APTG+GKTE L ++ + VI+ LPTQAT Sbjct: 227 SFVLRKFQEDIQDLKDD---ILLKAPTGTGKTEALLLWS-------KNNRVIYLLPTQAT 276 Query: 350 ANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQ 409 +NAM R+ +F + + HG ++ + + +S + + ++W + S Sbjct: 277 SNAMWNRLR----RMFGDYAVGITHGRAQL--IIRREESLKDNAESENQSWHSKVLFSS- 329 Query: 410 SNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVL 469 VF+ I V T+DQ L++ L +H + S +I+DEVHAYD Y GLL + + Sbjct: 330 ----VFMRPITVATLDQYLLAALHGRHWENKIFYTSNSDMIIDEVHAYDPYALGLLISTV 385 Query: 470 KAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLA 529 K + L SAT P L G RF + Sbjct: 386 KLFPP--KRLALASATFPKPLVSLFLQELG------------------------RFAEVN 419 Query: 530 HPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKE 589 ++L R ++ + + ++ ++ A +G + +I N V AQ Y+ ++ Sbjct: 420 AEKELWERRRLKVRL----EDQNIFSAIDDIVKEAKSGKNILVILNTVANAQKFYREIEY 475 Query: 590 LNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWL 649 L H+RF DR +KE ++ NFG GK G ILVATQVVE SLD+ FD L Sbjct: 476 PKK-----MLLHSRFVFRDREKKEK-MLENFG-YGKHEKGLILVATQVVEVSLDISFDTL 528 Query: 650 ITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRT 709 T+ P D L QR GR++R K EI I L YG + ++ + Sbjct: 529 YTEIAPVDALVQRFGRVNRTGEK------EIASVRIFLK----YGDKSALVYGRDILDFS 578 Query: 710 QQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQ 769 + + + + D +Y++ +KF++ E + + + Sbjct: 579 ANLLYAQLSETPT-ESDFLKINDFLYEEI---------MNAEKFKNLYEEGKQRVNEFYD 628 Query: 770 WAEEY--SLQDNDETILAVTRDGEMSLP-LLPY 799 Y L D D VTR + ++P Sbjct: 629 ILGPYTIDLSDIDMLSKFVTRKTDYITEWVIPI 661 >UniRef50_C5UTG9 Metal dependent phosphohydrolase n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UTG9_CLOBO Length = 775 Score = 307 bits (786), Expect = 1e-81, Method: Composition-based stats. Identities = 107/565 (18%), Positives = 219/565 (38%), Gaps = 76/565 (13%) Query: 279 CYEGVHALLDNGYQPRQLQVLVDAL-PVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIA 337 + L +P ++ L + + +I+A TG GKTE AL + Sbjct: 224 SPGNLEELTKKSLEPYKINELQQYMKENSQENLIIKASTGIGKTEGALMWI-------GN 276 Query: 338 DSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQE 397 + F LP + + N++ R+ + + L H NS ++ ++ K + Sbjct: 277 NKGFFTLPLRVSINSIYDRVASKIK--YGKDRTGLLHSNSASEYMKRNEKGTIDKKY--- 331 Query: 398 EAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAY 457 K + +CT+DQ++ + + ++ + S +I+DE+ Y Sbjct: 332 -----------LDTTKQLSLPLTICTLDQLIGFIFKYEGFELKLATLSYSKVIIDEIQMY 380 Query: 458 DTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWR 517 + M L L+ VGG +++AT P + + + + N Y + Sbjct: 381 SSEMIAYLIIALRDIVKVGGKFAIVTATFPPIFEHFM------NYAGIVKNVDYKIPTKA 434 Query: 518 GVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLV 577 + +L H ++ + + + I +V +I N V Sbjct: 435 FLKKNNGQVMLRHKVKVW-----------------EDDIDAKFIYENYKNKKVLVIVNTV 477 Query: 578 DVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQV 637 AQ Y+ L++ ++ + DI +FH+R+T DR +KE + K I + TQV Sbjct: 478 KAAQKLYENLEKYDDIKNDIFMFHSRYTQEDRAKKEITIFE--NGQLKNKFSGIWITTQV 535 Query: 638 VEQSLDVDFDWLITQHCPADLLFQRLGRLHRHH-RKYRPAGFEIPVATILLPDG--EGYG 694 VE SLD+DFD L T+ L QR+GR++R+ + V LP G + Sbjct: 536 VEASLDIDFDVLYTELSDISGLLQRMGRVYRNRILDTDKVNINVFVGGNKLPSGIHDNMS 595 Query: 695 RHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFE 754 +E I ++ + ++++ I + +G L + ++ +Y + E ++ N D Sbjct: 596 NYESII-DIDIFNKSKEAILKYDGLKLD-EEEKMLLVEDVYSVKNLKESKYFSNIKD--- 650 Query: 755 SAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVY 814 + Y L+ N+ + ++ S ++P + K+ + ++ Sbjct: 651 ---------TINIYNDLIPYDLKKNEAKLRNIS-----SETVIPEDVYKNNKEEIK-KIL 695 Query: 815 EDLSHEQQYEALALNRVNVPFTWKR 839 +D++ Y+ ++ + + Sbjct: 696 DDINETNAYDE----KIRLKDELMK 716 >UniRef50_B5YIV2 CRISPR-associated helicase Cas3 n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YIV2_THEYD Length = 728 Score = 307 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 141/761 (18%), Positives = 252/761 (33%), Gaps = 145/761 (19%) Query: 74 HDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLG 133 HD+GK + +FQ K S + P ++ + H W + LS + Sbjct: 50 HDLGKLNHKFQNKLGLSKKVIIPELKDID--------EIPHE-----WLSLAFLSREDKR 96 Query: 134 DFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREE 193 F + H + + HH ++ DK E + Sbjct: 97 YFHTLSTDTIHFADLVQYCIAF---HH---TRTKPFDKKALEKTICHDLEKNKGLLGINH 150 Query: 194 WISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINAL 253 ++ +F DI + S + + L Sbjct: 151 SLNFDYDIF--------KDIKQK--------------IDSQKNFKNYF------ELLVFL 182 Query: 254 RTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIE 313 + AS +E S + + L G+ + Q L V+ Sbjct: 183 KGILHKCDYTASANIEPESHYSGNYEKDFNNWLSKKGWHLKPFQNEAKRLSDK--SVVLV 240 Query: 314 APTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILA 373 A TG+GKTE ++ + + L + N M R + N+ L Sbjct: 241 ASTGTGKTEYSMNWI-------NGQKAFYLLGIRTAVNEMYRRFKDIF-----GENVSLL 288 Query: 374 HGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLP 433 HG S I + EE +V+ + + + V T DQ++ SV Sbjct: 289 HGE----------ISNIIEDDDTEERYVERIE-----TARKLSTPLTVATADQLVTSVFK 333 Query: 434 VKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQK 493 + L S +++DE+ ++ + LK +G ++++ATLP K++ Sbjct: 334 YNGFEMTYLTASYSKIVLDEIQSFSPDSIAAIMVFLKEVHRLGSKFLIMTATLPPFIKEE 393 Query: 494 LLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPD 553 L + + P++ + +D + + Sbjct: 394 LKELQNVEFPE-------PVLLPNKRHFITVYD----------------------EPIDS 424 Query: 554 LTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKE 613 L+ + +G ++ ++CN V AQ Y LK N + L H+R+ L DR+ KE Sbjct: 425 ERSLKMIDKNFKSGKKILIVCNTVKKAQQMYDMLKNFNPS-----LLHSRYILKDRKNKE 479 Query: 614 NRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKY 673 +R N ++ I +ATQVVE SLD+DFD L T+ P D L QR GR R Sbjct: 480 SRDHGIMAVNNPKHPPVIWIATQVVEASLDLDFDALFTECSPIDSLLQRFGRCWRK---- 535 Query: 674 RPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDS 733 R P I + IY + ++ RT I + + + + Sbjct: 536 REYTDNKPNIHIFKAEDN------RIY-DKELLDRTYSLIFNNYKNKIMDERDKQDAIFT 588 Query: 734 IYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMS 793 I+ D ++K + E KR K L + + + A R+ + Sbjct: 589 IFKD------------IEKTKYYEKYKRNKELLELGFKAQ-----SKTEAEAFFRNIAFN 631 Query: 794 LPLLPYVQTSSGK-------QLLDGQVYEDLSHEQQYEALA 827 ++P + + +L+D + E + + + Sbjct: 632 YCVIPRLVYEENEKEIRNLIELIDNKDTEKMQRIKAKAKIK 672 >UniRef50_B1C2J7 Putative uncharacterized protein n=1 Tax=Clostridium spiroforme DSM 1552 RepID=B1C2J7_9FIRM Length = 720 Score = 306 bits (784), Expect = 2e-81, Method: Composition-based stats. Identities = 143/726 (19%), Positives = 248/726 (34%), Gaps = 161/726 (22%) Query: 74 HDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLG 133 HDIGK + FQ K + HG L Sbjct: 56 HDIGKVNTIFQEKMRG----------------HYTNDEIPHGYLS------------VLA 87 Query: 134 DFFSFFDAAPHPYESWFPWVEAVTGHH--GFILHSQDQDKSRWEMPASLASYAAQDKQAR 191 F + + + + +V HH G L + ++ S+ L++Y D Sbjct: 88 VDFKKIGFSRKEIKEFKIIINSVFYHHRRGEFLKDRIKEFSKAYYEEQLSNYLG-DNYYN 146 Query: 192 EEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDIN 251 + ++ P ++ + ++ G + DW S Sbjct: 147 LSYANLNLIYPRNPTSTITDEEWIEF-VIVKGILNRCDWSASGN---------------- 189 Query: 252 ALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTV 311 L + + + + +Q + + Sbjct: 190 ---------------------LAIEIEAEQSMKDNILKRFDLNSVQKFM--MENYNENVA 226 Query: 312 IEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEA-SASHLFSSPNL 370 I A TG+GKTE AL + + F LP + +ANA+ R++ + + + Sbjct: 227 IVASTGAGKTEAALLWL-------NDEKGFFTLPMKVSANAIYQRIKEHYLLPINNQNRV 279 Query: 371 ILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLIS 430 + HG+ + + N + + VCTIDQ+ Sbjct: 280 AILHGDCYKLYD---------------------NDLANYHNARNLAYPLTVCTIDQIFKF 318 Query: 431 VLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQ 490 + S +I+DE+ AY M + LK +GG +++ATLP Sbjct: 319 AYKALGTEHLLATLKYSKVIIDELQAYSPDMLATIITALKYIHKIGGKFAIITATLPQFI 378 Query: 491 KQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADM 550 +L + R I I DM Sbjct: 379 LDEL--------------------------STCNIKYKRFIGNINNRHKIT---IHEDDM 409 Query: 551 LPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRR 610 L D L+ ++ A ++ +ICN V+ AQ Y +L EL ++ +I L H+R+T R+ Sbjct: 410 LND---LDNILDDAKT-KKILVICNTVNSAQKLYTKLLEL-DSNTEIHLLHSRYTKKHRQ 464 Query: 611 EKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHH 670 E+ VI K N I V+TQ+VE SLD+DFD L T D L QR+GR++R Sbjct: 465 ILEDDVIEF----SKSNRTGICVSTQIVEASLDIDFDVLYTYLSSIDSLIQRMGRVYRKR 520 Query: 671 RKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQW 730 I V DG G + IY RT +++ + +F + + Sbjct: 521 ENI---NQLINVNIYTFKDGIGCVYDKIIYE------RTLDILKDYHN-QMFLEEEKIKC 570 Query: 731 LDSIYDDAEMDEPEWVGNGMDK-----------FESAECEKRFKARKVLQWAEE--YSLQ 777 +D +YD E+++ ++ +K E +E + +F+ + E Y+L+ Sbjct: 571 MDRVYDRKELEKTRYMKIYNEKKEYLKDLIALQVEKSEVDNKFRNINSIYILPERFYNLK 630 Query: 778 DNDETI 783 + ++ I Sbjct: 631 EVEKLI 636 >UniRef50_Q5JGA4 DEAD/DEAH box helicase, fused to N-terminal HD domain n=1 Tax=Thermococcus kodakarensis RepID=Q5JGA4_PYRKO Length = 740 Score = 306 bits (783), Expect = 3e-81, Method: Composition-based stats. Identities = 158/829 (19%), Positives = 279/829 (33%), Gaps = 135/829 (16%) Query: 27 LIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRV-KAWLLFFIALHDIGKFDIRFQY 85 L H LD V ++N+F E LS +++ LHDIGK FQ Sbjct: 14 LECHTLDAINVLK-------SIKNSFPWLEELSPGIFERSFYAVL--LHDIGKCASGFQK 64 Query: 86 KSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHP 145 K W + + + A + +L E L + P Sbjct: 65 KK-NKWGYRHEILSVPFVQFLDFSERERNLIALAILTHHKTLDE--LEEILPVRIDNIGP 121 Query: 146 YESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTP 205 E D+ R E + +A + L F P Sbjct: 122 LE---------------FDEKLDELLERAEYIEKTFISRIPNIEAYYFGTTKLPKRFNLP 166 Query: 206 AGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDAS 265 D L +W N + + L Sbjct: 167 PDWKERLRDFDFQKL-------TEW-----YENNLEAERGTLTFMRGLLNASDHLASAGE 214 Query: 266 RVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETAL 325 + L + + L + R LQV + G ++ APTG GKTE AL Sbjct: 215 TEILLLPDIVERL------ELKIPMRKLRPLQVAA---SNSEGNLLLRAPTGYGKTEAAL 265 Query: 326 AYAWKLI---DQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLI-LAHGNSRFNH 381 +A + + I + + LP +A+ NAM RM +FS P+L+ + H ++ F Sbjct: 266 LWANRNAFRNKEGITSRIFYVLPYKASINAMHQRM----MDIFSDPSLVGVLHSSASFYL 321 Query: 382 LFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRG 441 +++ + ++ S + V T Q++ + V + Sbjct: 322 YTSALEYKRLS-----------------SLYHKIYTPLKVTTPFQLMKAFFGVGFHEMLK 364 Query: 442 LGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLH 501 + S++I DE+HAY+ + G++ A+LK + ++++ATLP ++ + DT Sbjct: 365 TELSGSLIIFDEIHAYEPNVLGIILAMLKELEGLKAKTMVMTATLPDFLEELITDTADFR 424 Query: 502 TDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMI 561 A R I + +++ DL + +++ Sbjct: 425 ELKTSAEEADKFTRHRV-------------------HVIDGGMESVGELIADLGIHKKVE 465 Query: 562 AAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFG 621 + G + CN VD A Y+ L E + L H+RFT DR KE ++ Sbjct: 466 ETSRPG---LVACNSVDQAVRVYKELSE----DYRVLLLHSRFTYGDRETKEKLLLEKMS 518 Query: 622 KNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIP 681 + +VATQVVE SLD+ F ++T+ P D L QR GR++R G++ Sbjct: 519 EYD------FVVATQVVEVSLDLSFSTILTEPAPLDALIQRFGRVNR-------QGWKEG 565 Query: 682 VATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMD 741 + +G IY+ V+ + + +++ +G L + + Y Sbjct: 566 RIEDVYVLTKGADADRKIYNPYDVVEESLKILQDFDGKELR-ESLIPELVSEAYAPVS-- 622 Query: 742 EPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQ 801 D+ + + A+ V + ++++ + L +P V Sbjct: 623 ---------DELVEKVRDYQNTAQDVFNNVKPMRTGEDEQKFYQMFNG----LEAVPGVY 669 Query: 802 TSSGKQLLDGQVYEDLSHE------QQYEALALNRVNVPFTWKRSFSEV 844 +LLD ++ +L Y A N + + V Sbjct: 670 QGRVSELLDKKMGMELYRYLIPIPMWFYHAERKNFHRLSDKGYGKYILV 718 >UniRef50_D1QSB0 DEAD/DEAH box helicase n=1 Tax=Prevotella oris F0302 RepID=D1QSB0_9BACT Length = 744 Score = 304 bits (779), Expect = 9e-81, Method: Composition-based stats. Identities = 150/723 (20%), Positives = 260/723 (35%), Gaps = 128/723 (17%) Query: 73 LHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSL 132 +HD GK + FQ L G ++ + H +Y+ + +LSE Sbjct: 55 MHDTGKGHVEFQ--------------KILLGKAS-LWYHQRHELFSIYFIHNSNLSE--- 96 Query: 133 GDFFSFFDAAPHPYESWFPWVEAVTGHH---GFILHSQDQDKSRWEMPAS--LASYAAQD 187 ++ + V GHH G + +++ E L+ D Sbjct: 97 ------------SEKTLVSFG--VLGHHKSLGDLFDFVNRNYYNDEDWDEEGLSYADECD 142 Query: 188 KQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAP 247 K EE +L+ L ++ P S+L L E+ Sbjct: 143 KLCYEEIKEILDRYELNLITKNV----PCIKSIL--------RLAKNKNVEGKANIENIL 190 Query: 248 SDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAP 307 I A++ + L K + ++ +Q R + Sbjct: 191 F-IGAIKQCDHMASAGIKHLYRL-----EKTDFAFLYKYPFFTHQLRDAEASCS------ 238 Query: 308 GLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSS 367 ++ APTG+GKTE AL + ++ + V + LP A+ NAM R+ + SS Sbjct: 239 --VILNAPTGAGKTEAALVWLKNQLEHRGQGRVYYILPYTASINAMYKRLNSCIGD--SS 294 Query: 368 PNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQV 427 + L HGN + + Q + + + K L + + T Q+ Sbjct: 295 KKVGLLHGN----------LMQYLDLQMENHSIDTIELQEQVEDFKSMLMPLKIVTPFQL 344 Query: 428 LISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKA-QADVGGSVILLSATL 486 L + +K I+DE+HAY+ + + +L + V +++ATL Sbjct: 345 LKHLFGIKGFEKGIFEWSGGYFIIDEIHAYEVKVFAQIIVLLSFAVQYLKVRVHIMTATL 404 Query: 487 PMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPIC 546 P + K+ G + + + + Y +++R + C Sbjct: 405 PTFMRCKIASVIGPYQEIIADKQLY--LSFR-----------------------RHRLFC 439 Query: 547 LADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTL 606 L +L D L+ + N G +V ++CN VD +Q+ Y+ L L H RF Sbjct: 440 LDGLLTD--YLDNIQVDINQGKKVLVVCNTVDESQMVYKYLHASKK-----VLLHGRFCA 492 Query: 607 NDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRL 666 DR + E ++ K + +LV TQ +E SLDVDFD + T P D L QR GR+ Sbjct: 493 EDRFKNEVKL--------KEDDVSLLVGTQAIEISLDVDFDLIYTAPAPLDALLQRFGRV 544 Query: 667 HRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIE--ELNGASLFFP 724 +R K I + + ++IY N V+ RT + ++ E + + Sbjct: 545 NRKREKG------ICPCYVFKERND---ADKYIYKNAGVIERTLEVLKQIEQDEGGIIQE 595 Query: 725 DAYRQWLDSIYDDAEMDEPEWVGNGMDKFESA-ECEKRFKARKVLQWAEEYSLQDNDETI 783 + + +D +Y +E E FE E + R + E Y D+ + I Sbjct: 596 NKLQALIDVVYPCWSEEEQEDFSMIKTLFEDYVEKDLRPLEYSAEREEEFYKQFDDKKVI 655 Query: 784 LAV 786 A Sbjct: 656 PAA 658 >UniRef50_Q0SUG1 CRISPR-associated helicase Cas3 domain protein n=4 Tax=Bacteria RepID=Q0SUG1_CLOPS Length = 736 Score = 302 bits (773), Expect = 4e-80, Method: Composition-based stats. Identities = 136/742 (18%), Positives = 263/742 (35%), Gaps = 160/742 (21%) Query: 74 HDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLG 133 HD GK + FQ + N ++ H LY+ N D E+ Sbjct: 62 HDYGKVNREFQNRIK-------------NETKFNEKKEIAHNVLSLYFINPDDFEEE--- 105 Query: 134 DFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREE 193 + ++ AV HH Y + E Sbjct: 106 -------------KDYYRVCFAVLYHH----------------------YYCDGLKVLSE 130 Query: 194 WISVLEALFLTPAGLSINDIPP---------DCSSLLAGFCSLADWLGSWTTTNTFLFNE 244 ++E L +++ P D + L+ GF + D+ S T + N Sbjct: 131 KTDLIENLLSEFETYELDEFTPMEIGDIKSDDEAILIKGFLNKCDFSASGNTEIEYKNNF 190 Query: 245 DAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALP 304 S L ++ D ++ +LQ A Sbjct: 191 LEESLERLLNSWKIDNKEAKW----------------------------NELQQF--AKN 220 Query: 305 VAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHL 364 ++ A TG GKTE L + + F LP + NA+ R+ Sbjct: 221 NRDNNIMVVAQTGMGKTEAGLHWI-------GNNKGFFILPLKTAINAIYDRVSNGIVKE 273 Query: 365 FSSP---NLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGV 421 ++ + L H +S ++ Q+ + + + +E K I + Sbjct: 274 NNNEEKHKVALIHSDSLSYYISQNEDTNIVLDHHREG--------------KQLSIPISI 319 Query: 422 CTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVIL 481 T+DQ+ V K ++ + S +++DE+ Y + L +K +GG V + Sbjct: 320 ATLDQIFDFVFKYKGYEVKLATLSYSKVVIDEIQMYSADLLAYLILGIKTIIRLGGKVAI 379 Query: 482 LSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQ 541 L+ATL K LL E+N+ + VN +R +L + +++ Sbjct: 380 LTATLAPFVKDLLL----------EDNNKLGFVEGTFVNELKRHNLKIYDDKINADVIYN 429 Query: 542 PEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFH 601 + E+ I+ ++ ++CN + AQ Y LK+ N ++I H Sbjct: 430 K----------YIDNKEKKIS-----NKILVVCNTIKKAQEIYNELKDKNIDNLNI--LH 472 Query: 602 ARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQ 661 ++F DR KE +++ FGK G I ++TQ+VE SLD+DFD+L T+ + LFQ Sbjct: 473 SKFIKRDRAYKEEQILE-FGKTNNIGDG-IWISTQIVEASLDIDFDYLFTELSDINALFQ 530 Query: 662 RLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASL 721 RLGR +R K ++ L + + + + ++ +++ + ++G L Sbjct: 531 RLGRCNRKGVK---PAYDYNCYVFLQIERNLLTNGDKGFIDKKIYELSKEALRNVDG--L 585 Query: 722 FFPDAYRQWLDSIYDDAEMDEPEW---------VGNGMDKFESAECEKRFKARKVLQWAE 772 + ++ + ++ +G++ +E + + + + Sbjct: 586 LSEEEKVNIINRTLTTENIKGSDYWSKYTEFFDYVSGLNPYEVDKKDVKLRNIISFDIIP 645 Query: 773 E--YSLQDND-ETILAVTRDGE 791 + Y +++ E++L + D + Sbjct: 646 QCIYEKNESEIESLLEIINDEK 667 >UniRef50_A4XGC8 CRISPR-associated helicase Cas3 n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XGC8_CALS8 Length = 908 Score = 301 bits (771), Expect = 7e-80, Method: Composition-based stats. Identities = 125/625 (20%), Positives = 223/625 (35%), Gaps = 89/625 (14%) Query: 63 VKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWF 122 +FF HD+GK FQ K A ++ + + H ++W Sbjct: 47 AAEIAIFF---HDLGKVLPSFQIK----------ALGNIGYYPRDVVYEIPHSLFSVFWI 93 Query: 123 NQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHH--GFILHSQDQDKSRWEMPASL 180 N D L E+ + E + A+ HH + + + Sbjct: 94 NIDKLKEKLNSE------------EYLNYIISAIAYHHWKDNFDEIISLENKQLKQVCEK 141 Query: 181 ASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPD-CSSLLAGFCSLADWLGSWTTTNT 239 Y +D+ +E + + D+ ++L+ + Sbjct: 142 VIYEWKDEL-KENLDKEFGKISSYDEYKELIDVNITWLKAILSHRLFV------NLAVPP 194 Query: 240 FLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVL 299 + F+ ++ + R + + E + + + + + + Sbjct: 195 YKFDYHPLRG--EVKKEWIFISGVLQRCDHFASWCEEEGIEEELGNVEIDAPEKENVTKI 252 Query: 300 VDA------------LPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQ 347 + + T++ APTG GKTE A ++ + + + LP + Sbjct: 253 ISRSIGDKAWQFKELEKCSEKNTILIAPTGYGKTEFAFLWSS-------GEKLFYTLPLR 305 Query: 348 ATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWL 407 A+ N R A + F L H ++ L +S E ++ C+ Sbjct: 306 ASVNNTFER----AKNAFGCNKTGLLHSDADVYLLDKS---------SDETGSIKLCELA 352 Query: 408 SQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEA 467 K + V T DQ L + + S + +DE+ AY ++ Sbjct: 353 -----KQLSYPVIVSTGDQFFPYALRPPGFERIFVSLSYSRIAIDEIQAYSPKACAIIVK 407 Query: 468 VLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDL 527 L+ +GG +L++AT+P L D V + Y + D Sbjct: 408 FLEWVYKMGGKFLLMTATMPKFVIDYLKDVIPDFCKKVNFVNIY----------EKEKDA 457 Query: 528 LAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRL 587 + + R ++ D+ ++ + ++ A +V +I N V AQ Y +L Sbjct: 458 FSKLYKHKIRLNLIETKDKQFDIPDEI--IREVLQKAKDNKRVLVILNTVGFAQSVYDKL 515 Query: 588 KELNNTQV--DIDLFHARFTLNDRREKE-NRVISNFGKNGKRNVGRILVATQVVEQSLDV 644 K + Q+ I L H+R+TL DR KE + + + F +VG+ILVATQVVE SLD+ Sbjct: 516 KNSADEQLKERIFLIHSRYTLKDRENKEFDYINNKFKNPKTEDVGKILVATQVVEASLDI 575 Query: 645 DFDWLITQHCPADLLFQRLGRLHRH 669 D D L T+ CP D L QR+GR+ R Sbjct: 576 DADILYTEMCPLDCLVQRMGRVLRR 600 >UniRef50_C9M4E9 CRISPR-associated helicase cas3 domain protein n=1 Tax=Lactobacillus helveticus DSM 20075 RepID=C9M4E9_LACHE Length = 809 Score = 301 bits (770), Expect = 9e-80, Method: Composition-based stats. Identities = 145/781 (18%), Positives = 256/781 (32%), Gaps = 135/781 (17%) Query: 65 AWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQ 124 L + HD+GK ++RFQ K P H + Sbjct: 68 RLLEIACSYHDLGKMNLRFQKKVKAGQSFCKGEIP--------------HALLSITMLPI 113 Query: 125 DSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYA 184 D L + + + A+ HH + E+ A +A Sbjct: 114 DEL-------------QKHYTKDQIIALIFAIKWHHERNFSEIYEKHYEDEIEALKKEFA 160 Query: 185 AQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNE 244 + D + + P + D S L G + E Sbjct: 161 SFDYSKS--------SFPIPPQEPAKVD-----SKYLTG----------NLSHRLSPNYE 197 Query: 245 DAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDAL- 303 D + +R A+ S + + ++ + + Sbjct: 198 PKIYDEFVILKGLLNRIDYAASGHYEIESKSRVCLSQNILQEW---HKKNPVADWNELQK 254 Query: 304 ---PVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEAS 360 V+ TG GKTE+AL + F LP ++ N++ R+ Sbjct: 255 YTYDHRNESIVVVGQTGLGKTESALRWLDN-------SKSFFVLPLKSAINSIYDRISGI 307 Query: 361 ASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIG 420 S NL L H + + +++ + E EE + ++ + Q+ Sbjct: 308 VFQNKSHENLALLHS----DMMAKALSEKFDDEDNFEE---------FVNEERSWSKQLS 354 Query: 421 VCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVI 480 V T+DQ+ V K+ + + + +++DE+ Y + G L L GG Sbjct: 355 VATLDQIFNFVYHYKNYEPKLATLAYAKVVIDEIQMYSPDLLGYLIYGLGEIQKFGGKFE 414 Query: 481 LLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSI 540 +++ATLP LL++ GL + P +N R + + Sbjct: 415 IMTATLPPFLID-LLESNGLEFKQAPHPFLDPKVNHR------------------HKVKV 455 Query: 541 QPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLF 600 + I D I + + ++CN V A Y LK+ + D+ L Sbjct: 456 LHKQINSDD-----------IINLDRHQKTLVVCNTVKSATELYSELKQKGVS--DVHLI 502 Query: 601 HARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLF 660 H+RF DR E+E ++ FG+ + G I + TQVVE SLD+DFD LIT+ LF Sbjct: 503 HSRFIRKDRNEREKEILE-FGQKENHSSG-IWIGTQVVEASLDIDFDMLITELSELCGLF 560 Query: 661 QRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGAS 720 QR+GR +R R Y + V G + Y + R H+ E++ + Sbjct: 561 QRMGRCYRK-RNYEGKEPNVYVFDGGDKLTSGIHESKQEYDDKRYHSVVDYHLFEISKRA 619 Query: 721 L------FFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEY 774 L + +D Y DK C+ K + + + Sbjct: 620 LAQVDGYLTESDKLKLIDENYT-------------TDKLLDENCQLIDKVNDCIDYLNDL 666 Query: 775 SLQDN---DETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRV 831 + DN E ++ R+ ++ ++P K L+ ++ ++ + L Sbjct: 667 TFLDNLKTKEEVVNTFRNI-NTIDIIPEQVFLENKDKLEAAAKALNNYIRREDFLDQTEY 725 Query: 832 N 832 Sbjct: 726 K 726 >UniRef50_A5UJJ3 Predicted helicase n=1 Tax=Methanobrevibacter smithii ATCC 35061 RepID=A5UJJ3_METS3 Length = 734 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 108/496 (21%), Positives = 197/496 (39%), Gaps = 62/496 (12%) Query: 296 LQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLT 355 L+ G + + APTGSGKTE + +A + + + LP A+ NAM Sbjct: 235 LRKTQLIASKTKGSSFLIAPTGSGKTEASFLWADNNQTDNFSKRIFYVLPFTASINAMYN 294 Query: 356 RMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVF 415 R+ L S + ++HG + + +++S++S E E +Q + K Sbjct: 295 RL---VKDLGSDELVGISHGKASY-FIYKSVESGDYDESNFETKRIQ-------NLTKKI 343 Query: 416 LGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQA-D 474 + T Q++ VK + + S+LI+DE+HAYD + LL LK Sbjct: 344 YRPYKILTPFQLIKFFFGVKGFEMGLSELTNSLLILDEIHAYDARVTCLLLESLKILKSK 403 Query: 475 VGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQL 534 + ++SATLP K + ++ + L + Sbjct: 404 FDVDIFIMSATLPSFLKNLF---------------------SKELDISNFISLDSKELDS 442 Query: 535 PPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQ 594 R + C+ + ++++ N+G +V ++CN VD AQ Y+ KE Sbjct: 443 FTRHKVNIINNCIENCC------DKILNDINSGKKVLIVCNTVDKAQFIYEWFKE--KDV 494 Query: 595 VDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHC 654 + L H+RF L DR E + + +L+ TQ +E SLD+D+D L ++ Sbjct: 495 DNSALLHSRFILKDRERIEKNL----------DNLNLLIGTQAIEVSLDIDYDVLYSEPA 544 Query: 655 PADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIE 714 P D L QR GR++R K I I G ++IY N ++ +T + Sbjct: 545 PLDALIQRFGRVNRRGWKDD----IIKQVNIF---KIGSDNDKYIY-NQNLVNKTLDVLN 596 Query: 715 ELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEY 774 + + ++ +D +Y + + + + + + + + + Y Sbjct: 597 NFD---ILPESKIQEIIDHVYSEGYDSKNQETFDEVKLSFNRLLKNIVPFINFNKDNDFY 653 Query: 775 SLQDNDETILAVTRDG 790 +L D+ E + R+ Sbjct: 654 NLFDSYEVVPQKFREE 669 >UniRef50_B9L1B9 CRISPR-associated helicase Cas3 domain protein n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L1B9_THERP Length = 773 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 160/779 (20%), Positives = 278/779 (35%), Gaps = 102/779 (13%) Query: 27 LIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYK 86 L H L+V A + L + + + + L A HD+GK + FQ Sbjct: 16 LRQHTLEVLAYVEQVIPAYRALWSRVLDSRSV--DHLGRALPLAAAGHDLGKAALGFQRS 73 Query: 87 SAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPY 146 E +F H + A P Sbjct: 74 LQE----------------RGFRWEFRHEVLSAALL-------------LASGHATGDPG 104 Query: 147 ESWFPWVEAVTGHH------------GFI--LHSQDQDKSRWEMPASLASYAAQDKQARE 192 + + AV HH G Q +K++ + A + Sbjct: 105 QLA---IAAVLTHHRDLTEERLWRDCGVPQLPRPQFLEKAQRQFRERAAELGPFWEWIVR 161 Query: 193 EWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINA 252 + +E L S +D+ P L + AD L + F E ++ Sbjct: 162 -FSQEVEVLRTDQWPCSPHDLEPPAEFLRS-LQERADRL------HAFRSAEGLLLTLSR 213 Query: 253 LRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVI 312 D A +S + + R QL+ AL G ++ Sbjct: 214 GWLLAADHAASAGIPRFVSTIPTEWRARHAERLAHSRAQGDGQLRAFQRALGEYEGSALL 273 Query: 313 EAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLIL 372 APTG+GKT+ A+ + + ++ + + + LP QA+ AM + LF + Sbjct: 274 IAPTGAGKTDAAIRWIAR--NRIGGERIFYILPYQASIEAM----GQTLERLFGRETVGT 327 Query: 373 AHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVL 432 H + + R + EEA+ Q + ++ I V T Q++ + Sbjct: 328 LHART-----LEVAFQRYFSGDDYEEAYQAARQDAELN--RLVHKPIKVTTPFQLIKWLF 380 Query: 433 PVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQ 492 + + + +++I DE+HAYD ++ L+ +++ ++G + +SAT P +Q Sbjct: 381 GLPRFEVGLAEMVGALVIFDEIHAYDAHVTALILELVRVLRELGARCLFMSATFPDFLRQ 440 Query: 493 KLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLP 552 + D Y A PL +R ++ D A R ++ L + Sbjct: 441 YIEDAY-----------AQPLRLFR-LDQPPAHDTWAERFLAQARHRVEWTADPLEE--- 485 Query: 553 DLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREK 612 +++ ++ AA G +V ++ N V AQ YQRL E + L HAR DR + Sbjct: 486 ---LVDLVVEAAQNGERVLVVANRVQQAQALYQRLVECVPDG--LQLLHARLMRRDRVAR 540 Query: 613 ENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRK 672 E R+++ V R+LVATQVVE SLD+ FD L+T+ P D L QR GR++R++ Sbjct: 541 EQRILAALRGESPEPV-RVLVATQVVEVSLDISFDRLVTEVAPVDDLLQRFGRVNRYYEH 599 Query: 673 YRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLD 732 P I YG + + + RT + A F QW++ Sbjct: 600 NSPRPIVISRT---------YGDALYYVYDRERLERTLEEAPPHGHALDAF--DAEQWVE 648 Query: 733 SIYDD-AEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDG 790 +Y + +E + F + R + + + Y L E + + ++ Sbjct: 649 RVYREGWTTNEGRRFEQALASFRAVIEGLRPLQHADMAYEDFYRLFQGAEVLPSPFQEE 707 >UniRef50_A1HND8 CRISPR-associated helicase Cas3 n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HND8_9FIRM Length = 791 Score = 299 bits (765), Expect = 4e-79, Method: Composition-based stats. Identities = 165/762 (21%), Positives = 267/762 (35%), Gaps = 126/762 (16%) Query: 5 KYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVK 64 + + W KS L+ H AV D + + + + + Sbjct: 8 QSLGDIWAKS--PPGPDETAASLVDHIF---AVLAQMGDYIRLYEEELRSVKHID---LP 59 Query: 65 AWLLFFIALHDIGKFDIRFQYK-SAESWLKLNPATPSLNGPSTQMCRKFNHG-AAGLYWF 122 LL+ LHD GK RFQ + L SL F G A Sbjct: 60 RVLLYAALLHDFGKIHPRFQQQLRGYCRFGLRHEVLSLAFLQYLDIPPFERGYLAAAIVL 119 Query: 123 NQDSLSEQSLGDFFSFFDAAPH-PYESWFPWVEAVT-------GHHGFILHSQDQD---- 170 + ++G+ + + P ++ P E G G D Sbjct: 120 HHKGWRTLTVGEGSTVAYYNRYVPVDAIAPLAELTADLSQDKIG--GLKRLLADSANIIK 177 Query: 171 -------KSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGL--SINDIPPDCS-SL 220 K P S Q+ ++ +++ L G + D P L Sbjct: 178 NVTGLTIKPYDYKPTSAIDLRTAIYQSFQDAETIVLQLKKQNRGHRHAAIDWPKAYIGFL 237 Query: 221 LAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCY 280 L G AD L S A++V +G + + Sbjct: 238 LRGLMIAADHLAS------------------------------AAKVDLQTGFSNVEEVL 267 Query: 281 EGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQI-ADS 339 ++ LDN ++ ++L L G ++ APTG+GKTE+AL +A D+ Sbjct: 268 TALNIKLDNLWEHQRL------LAKTEGNAILIAPTGTGKTESALLWAALQRDKNKTCGR 321 Query: 340 VIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEA 399 V F LP +A+ AM R+ +F + + HG S +L++ + + E A Sbjct: 322 VFFLLPYRASMQAMAARL----GMVFGKDAVAIIHGKS-LIYLYEKLLDQ---EYSPANA 373 Query: 400 WVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDT 459 V Q ++ ++ + + VC+ Q++ S K + L+ DE+HAYD Sbjct: 374 LVTAKQ--QEALNRLNVAFLRVCSPYQLIKSFFAQKGYETIICSALSAQLVFDEIHAYDP 431 Query: 460 YMNGLLEAVLKAQ-ADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRG 518 + +L + V+ +SATLP Q + + PV+ P ++W Sbjct: 432 KITAMLLVAAQFLCERFNARVLFMSATLPSHLLQSIQKMFPSIRAPVK-----PAVDWLK 486 Query: 519 VNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVD 578 R L P + I AA V + N VD Sbjct: 487 QVKRHRISRLPFASLSPETV--------------------QHIKAAAKNKSVLAVVNRVD 526 Query: 579 VAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVV 638 A L++ D+ L H+RF DR KE ++ G +LVATQVV Sbjct: 527 RAIRLANMLRK---EISDVVLLHSRFNARDRSRKEKQL--------APKPGHVLVATQVV 575 Query: 639 EQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEH 698 E SLD+D+D + P + L QR+GR++RH ++ PA V P+G Sbjct: 576 EVSLDIDYDIGFFEPAPLEALLQRMGRVNRHGKQVHPAD----VYIFSPPEGNVTDDWAK 631 Query: 699 IYSNVRVMWRTQQHIEELNGAS---LFFPDAYRQWLDSIYDD 737 Y + + Q I + G+S ++ + LDS Y + Sbjct: 632 PYDAEH-LSQVLQVINDFLGSSHCRIWDESMTQSLLDSSYPE 672 >UniRef50_O27158 Conserved protein n=1 Tax=Methanothermobacter thermautotrophicus str. Delta H RepID=O27158_METTH Length = 830 Score = 298 bits (762), Expect = 7e-79, Method: Composition-based stats. Identities = 151/821 (18%), Positives = 292/821 (35%), Gaps = 114/821 (13%) Query: 16 KSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHD 75 ++ + +LL H + VA + N + + ++ +A + I +HD Sbjct: 11 RAKSNDQRNYLLKDHLKET--VARIDDFHNFYQTNREKFSYKIGEKTFRALAMASI-IHD 67 Query: 76 IGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDF 135 +GK D FQ K + P + R H + W F Sbjct: 68 LGKIDYNFQKKLMGDDSEAWEVLEEFLSPLKPLKRSPRHEILSIIWST-----------F 116 Query: 136 FSFFDAAPHPYESWFPWVEAVTGHH--GFILHSQDQDKSRWEMPASLASYAAQDKQAREE 193 D + HH + L+ +D + + + Y + +E Sbjct: 117 LLGNDDLDAMMRTAILL------HHYNEYFLNDKDLMEIIFTYRDAFEIYLNFIIEKKET 170 Query: 194 WISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTN--------------- 238 +E + +D+ S AD + S Sbjct: 171 LRIFIEDILNYIQNSLESDL----------VISAADEIRSNMDFEKPELLLEKIKEYDDD 220 Query: 239 -----TFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQP 293 F E+ +DI L + AS +++ + ++ + + + + Sbjct: 221 ISEFAAFYEPEERSADILILSGILRRADYSASAGVDI--ELFSEEVFRDIDEKITSKIGG 278 Query: 294 RQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAM 353 Q+ + P V+ APTGSGKTE ++ +A K I+ LP + N + Sbjct: 279 APWQIRLMGELGGPKKMVLVAPTGSGKTEFSILWAAKH-----GRKFIYTLPLRVALNDI 333 Query: 354 LTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKK 413 R+ S FS + + H + +L + R ++ + Sbjct: 334 FMRLRDS-DGYFSEDEIDILHSTAFIEYLKEERLGRGTDLDSM------------MTSAR 380 Query: 414 VFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQA 473 + + T DQVLI+ L + +I+DE+ Y+ M ++ L+ Sbjct: 381 LMASPALLTTPDQVLITSLNYFGSDKVISVYPFASMILDEIQTYNEEMAAVIIKTLELVN 440 Query: 474 DVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQ 533 +V G++++++ATLP + LD V + +A P G + + +L H Q Sbjct: 441 EVDGNILVMTATLPPYFR-SFLDAMNF---EVMDVAAIP-----GAHDIKNLNLKRHVPQ 491 Query: 534 LPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNT 593 L E D L L +++ N+ V ++ N V A Y+ ++ Sbjct: 492 L-------IEEPLFNDELEVSDKLGKILDE-NSEKNVLIVVNNVQKAIELYREYQD---- 539 Query: 594 QVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQH 653 D+ L H+R + ++ V K + G +++TQ++E S+D+DFD +IT+ Sbjct: 540 DPDVYLLHSRLLEKVKSQRIGEV----KKRSQDERGLTVISTQIIEASVDIDFDLMITEI 595 Query: 654 CPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHI 713 D QR GR+HR+ R A ++ I++ R IY + +V+ T+ + Sbjct: 596 STIDSQIQRWGRIHRN----RDADYDSGDPNIIIFTDSD-RRTSLIY-DKKVLDATRAIL 649 Query: 714 EELNGASLFFPDAYRQWLDSIYDDA------EMDEPEWVGNGMDKFESAECEKRFKARKV 767 E +G + + R ++ ++ + + + + + EKR +A+++ Sbjct: 650 ERYDG-QILDYNLERSMIEEVFQEEIDGSTLKEIYENQIRETISDLDYFTVEKRTQAQRL 708 Query: 768 LQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQL 808 + Y + D AV R E + +L Sbjct: 709 FRNMAGYKVFIPD----AVLRYSESEIERTFAELIKGDYRL 745 >UniRef50_C2HJB0 ATP-dependent helicase n=1 Tax=Finegoldia magna ATCC 53516 RepID=C2HJB0_PEPMA Length = 775 Score = 298 bits (762), Expect = 8e-79, Method: Composition-based stats. Identities = 117/701 (16%), Positives = 247/701 (35%), Gaps = 116/701 (16%) Query: 67 LLFFIAL-HDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQD 125 +L+ L HD+GK + FQ + N + H + N Sbjct: 54 ILYLSCLYHDMGKINPVFQERLK-------------NKNKFDKNVEVGHNILSTFLVN-- 98 Query: 126 SLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAA 185 SF D + A+ HH +I + D E Sbjct: 99 -----------SFLDDKSGRKNNLIRC--AILNHHNYIENFTYLDAEINEELIEKNLLEI 145 Query: 186 QDKQAREEWISVLEALFLTPAGLSINDIPPDCSS----LLAGFCSLADWLGSWTTTNTFL 241 DK + ++ E + T +I ++ + ++ G + D+ S Sbjct: 146 NDKFLHLDSENIEEMMDETLDFQNIYEMKRIQKTYEYIIIKGLLNKCDYAAS-------- 197 Query: 242 FNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVD 301 + + + +++L Y R +Q Sbjct: 198 -----------------------------AHMKCEIKNDFLLNSLESLNYNWRDIQQFC- 227 Query: 302 ALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASA 361 + VI TG GKTE +L + + + + LP + NAM R++ Sbjct: 228 -IENRNDNLVIVGSTGLGKTEASLLW-------GADNKIFYVLPLRTAINAMYERIKNLV 279 Query: 362 SHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGV 421 + + + + HG + +L + + + + + E + + + N K I V Sbjct: 280 KNDY-DKKVAVLHGQTDSVYLKE--LNNDFSVKNENEKFYEYYK-----NTKKLAMPITV 331 Query: 422 CTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVIL 481 T DQ+ SV + S +I+DE+ AY + ++ D+GG + + Sbjct: 332 ATPDQLFDSVFKYNGYEFKMATFSYSRIIIDEIQAYSPDILAYTIYAIRLINDLGGKIAI 391 Query: 482 LSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQ 541 +ATL K L + ++ ++ + ++ + ++ Sbjct: 392 FTATLAPFVKDLLTKKSSITSE------------YKFKDFECKYHCFLSENKRHSMKIVE 439 Query: 542 PEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKE-LNNTQVDIDLF 600 E D +E ++ ++ N + AQ Y +L L+ ++ +++L Sbjct: 440 KEL--------DSEYVEEILNKRENIRTCLIVRNTIKSAQELYNQLNNNLDCSKYEVNLL 491 Query: 601 HARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLF 660 H++FT+ DR++KE ++ + + ++ ++TQ+VE SLD+DFD + T+ LF Sbjct: 492 HSKFTVEDRKQKEVEILKDGNPKNVNDKIKVWISTQIVEASLDIDFDIMFTELSELLGLF 551 Query: 661 QRLGRLHRHHRKYRPAGFEIPVATILLPDGEG---YGRHEHIYSNVRVMWRTQQHIEELN 717 QRLGR++R R +IP + E + + + + + ++ ++E Sbjct: 552 QRLGRVYRK----RTLESDIPNIYVFTEISEKQISSAYNSYGFIDQTLHDLSKTALKE-K 606 Query: 718 GASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAEC 758 G + + ++ + ++ +++ F + Sbjct: 607 GDGIITEEEKMNMINQYFTTEKLRNSDYIKKFNQVFNKIQS 647 >UniRef50_UPI0000F51764 CRISPR-associated helicase Cas3 n=1 Tax=Ferroplasma acidarmanus fer1 RepID=UPI0000F51764 Length = 746 Score = 294 bits (752), Expect = 1e-77, Method: Composition-based stats. Identities = 113/498 (22%), Positives = 198/498 (39%), Gaps = 78/498 (15%) Query: 286 LLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALP 345 L N +L L + +I++PTGSGKTE +L + + +++ LP Sbjct: 238 YLQNRPDFNKLNELQIFMQENNDNYIIQSPTGSGKTEASLLW-----SKYNNGRIVYILP 292 Query: 346 TQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQ 405 T T+N + R++ + + + H S + + Sbjct: 293 TMVTSNKIFERLKQIFGDI-----VGIQHSTSLLL----------MDTDIDADKNNYNHD 337 Query: 406 WLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLL 465 ++ K F I V T+DQ+L S+ + G S +I DE+HAYD Y L+ Sbjct: 338 AFARFYYKTFSSPIMVSTVDQLLYSLFNINRWDSVFFNSGISNVIFDEIHAYDPYTTSLI 397 Query: 466 EAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRF 525 + V+++SAT+P K + IN+ Sbjct: 398 IEYINKAHIFNQRVLIMSATIPDILKDFI-------------KCKTKKINFVDKE----- 439 Query: 526 DLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQ 585 F I + + D+ +I ++ +I N + A+ Y Sbjct: 440 ------------FDINEIRYNVNVIDGDINNSIDIIKKHKDIKKILVIANTIKTAKYLYS 487 Query: 586 RLKELNNTQV-DIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDV 644 ++++++ + + LFH++FT NDR+EK + ++ I +ATQVVE SLD+ Sbjct: 488 QIRDIDEIKDKKVVLFHSQFTYNDRKEKSELL--------EKEDNIIAIATQVVEVSLDI 539 Query: 645 DFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVR 704 DFD LITQ P D L QR GR++R +K F +++Y N Sbjct: 540 DFDLLITQIAPPDALIQRFGRVNRRGKKGNTKIFIYKNC----------ENDKYVYKN-E 588 Query: 705 VMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEP-----EWVGNGMDKFESAECE 759 +M +T + + N S ++ ++ IY+D E E V N + + + + + Sbjct: 589 LMKKTFDYFNKYNYKSNT---DSKKLINEIYNDNEYKENLKNAYTEVKNKIYEIQVEDLK 645 Query: 760 KRFKARKVLQWAEEYSLQ 777 +K Q AE+++L Sbjct: 646 SVYKFNIEEQIAEKHNLI 663 >UniRef50_B7GIV6 CRISPR-associated protein Cas3 n=3 Tax=Bacillaceae RepID=B7GIV6_ANOFW Length = 726 Score = 293 bits (749), Expect = 2e-77, Method: Composition-based stats. Identities = 130/681 (19%), Positives = 233/681 (34%), Gaps = 125/681 (18%) Query: 74 HDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLG 133 HD+GK + FQ K ++ + + T + H + L Sbjct: 54 HDVGKANTVFQNKIRQAIRE--------SMLETDIETDVPHNYLSVGCIPLKQLDLTKEE 105 Query: 134 DFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREE 193 + + V HH R ++P + +++ Sbjct: 106 ERL---------------LIHGVGYHH-----------EREQLPEKEMIRQVLENDIKKQ 139 Query: 194 WISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINAL 253 + E + L D L N + +++ + Sbjct: 140 LPQLSEHMRLPMTEKFSYRFV--------------DRL-----LNRYTYHDGEEFWKYVM 180 Query: 254 RTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDN-GYQPRQLQVLVDALPVAPGLTVI 312 R A+ K Y V+ + G+ LQ + + Sbjct: 181 IKGLLHRLDHAASAHIDVESDVEKSIYINVNEYMKKQGFHKNDLQQFAEQHHDKH--VIA 238 Query: 313 EAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLIL 372 A TG GKTE AL + D F LP + + NA+ R++ + L Sbjct: 239 IAQTGMGKTEAALLWIQH-------DKAFFTLPLRVSINAIYDRIKEKM----GYDAVGL 287 Query: 373 AHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVL 432 H S ++L +EE W + Q KK+ L TIDQ+L Sbjct: 288 LHSTS-VHYLV-----------DKEENWEELKQQSEHYAKKLLL-----TTIDQILKFPF 330 Query: 433 PVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQ 492 K + + +++DE+ AY+ + +L L+ VGG ++++ATLP + Sbjct: 331 YYKGFEKELSAMANAKVVIDEIQAYEPRIAAMLIKSLEMIHRVGGKFMIMTATLPTLYLE 390 Query: 493 KLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLP 552 +L R V + + + R I+ + + + Sbjct: 391 ELKQ--------------------RNVINDDQIAIEEFIDTSVNRHRIRLRSEGIEEAIG 430 Query: 553 DLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREK 612 + + +QV +I N V A Y + + +TQV I L H++FT DR+ Sbjct: 431 E-------VLELGETSQVLVIVNTVRQAMSLYDKFLDC-DTQVPIYLLHSQFTQEDRQLL 482 Query: 613 ENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRK 672 E + F ++ +R I + TQ+VE S+D+DFD+L T+ D LFQR GR +R Sbjct: 483 EKHI-KQFNEDNERG---IWITTQLVEASIDIDFDYLFTEMSTLDSLFQRFGRCYRK--- 535 Query: 673 YRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLD 732 R + I + G R +Y N ++ + + +E + + A + + Sbjct: 536 -RELDHDNCNIHIFTENISGIPR---VY-NEHLVNESIRLLEPYDH-QIVDERAKVEMVK 589 Query: 733 SIYDDAEMDEPEWVGNGMDKF 753 +YD ++ ++ D Sbjct: 590 QLYDRKQLKGTSFLKEFEDAL 610 >UniRef50_Q184G8 Putative uncharacterized protein n=7 Tax=Clostridium difficile RepID=Q184G8_CLOD6 Length = 773 Score = 290 bits (741), Expect = 2e-76, Method: Composition-based stats. Identities = 144/827 (17%), Positives = 270/827 (32%), Gaps = 151/827 (18%) Query: 58 LSKQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAA 117 L ++ L F I HDIGK FQ + T + H Sbjct: 40 LEEEIFWQLLDFVIEFHDIGKAFSPFQELIKSRMDTKINEPKIV----THLENNVGHNYL 95 Query: 118 GLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMP 177 + + + + + + + + + HH ++D + Sbjct: 96 SPAFIDYSYIDRKKNKELRAVLN-------------QVIVYHH-------ERDIFIDKDF 135 Query: 178 ASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTT 237 +L + + + L+ F + + + Sbjct: 136 KNLIQKILDEDLINKVYE--LQHEFKVRYPIKTEKLSKVYLQSVE-----------KRID 182 Query: 238 NTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQ 297 + L + D A V+E + +++ E L+ R+ Q Sbjct: 183 KNHKYYNLYIMLKGIL--HRLDHSASAHEVVECNNVINIGEQTENY--LMKEFGSLREAQ 238 Query: 298 VLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRM 357 A ++ APTG GKTETAL + K D F LP + + NA+ R Sbjct: 239 SF--AKSNRNKNIILIAPTGMGKTETALIWIDK-------DKAFFTLPLRVSINALFDRA 289 Query: 358 EASASHLFSSPN-LILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFL 416 + S+ L L H + + E QE + K+ Sbjct: 290 KNIVGVGESNDTFLGLLHSTA----------IDYLEESNQENSSEIV------DLAKLLS 333 Query: 417 GQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVG 476 ++ TIDQ+ + + S +++DE+ AY + +L ++ +G Sbjct: 334 CKLTFSTIDQIFKFPFLYRGYEKVYSTLAYSKVVIDEIQAYSPEIAAVLVKGIEMIHKIG 393 Query: 477 GSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPP 536 G ++++AT+P +L RGV + +L + E++ Sbjct: 394 GRFMIMTATMPTIYIDELKK--------------------RGVMNSNLAELTCNTEKIRH 433 Query: 537 RFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKEL---NNT 593 SI I L ++I + +V +I N V A Y+ ++E+ Sbjct: 434 CVSIVENSID--------ENLGKIIQ-SGMNKKVLVIVNTVKSAVEKYELIEEIVKPKGI 484 Query: 594 QVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQH 653 V+++L H+ + DR + E + + I + TQ+VE SLD+DFD L T++ Sbjct: 485 DVNLNLLHSMYIQEDRAKLEKYIKEF----ADSDSNGIWITTQLVEASLDIDFDELHTEN 540 Query: 654 CPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHI 713 D LFQR GR +R R P I G G IY + ++ + + + Sbjct: 541 STLDSLFQRFGRCYRS----REYEENSPNIFIYTEKATGIG---SIY-DKDIVEKGLELL 592 Query: 714 EELNGAS--LFFPDAYR-QWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQW 770 + + + Y+ + + +Y ++ + ++ A +L Sbjct: 593 KTFINGKECVKMKEKYKVEMVKILYSKESLEGTAF------------EKRFTSALNILDT 640 Query: 771 AEEYSLQDND--------ETILAVTRDGEMSLPLLPYVQTSS-GKQLLDGQVYEDLSHEQ 821 YSL D E + D + G++L++ +D Sbjct: 641 ITPYSLGSKDAQNILRNIEGYTVIPEDIYNKIEETLIKDYEELGQELINAYSNDDRQLIN 700 Query: 822 QY--------EALALNRVNVPFTWKRSFSEVVD------EDGLLWLE 854 + + VN+P ++ V+D ED + L Sbjct: 701 KIKSKRKKARREIIKKTVNLPI--YKAKQNVIDIQVKGLEDLKILLY 745 >UniRef50_UPI0001BC52A9 metal dependent phosphohydrolase n=1 Tax=Fusobacterium sp. 3_1_5R RepID=UPI0001BC52A9 Length = 801 Score = 289 bits (739), Expect = 3e-76, Method: Composition-based stats. Identities = 146/824 (17%), Positives = 262/824 (31%), Gaps = 175/824 (21%) Query: 31 CLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVK----------------AWLLFFIALH 74 +DV + + + +S L+ E+L ++ + L H Sbjct: 1 MIDVKKIKNEFLAKSNPLETIMEHTEILLQEYDRISTIYPNFIEKIPKVWKVLYLVCVYH 60 Query: 75 DIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGD 134 D GK + FQ + + + H + N + LS++ Sbjct: 61 DWGKINFPFQNRILTGK---------------KQWNELPHAILSIACLNAEELSKEF--- 102 Query: 135 FFSFFDAAPHPYESWFPWVEAVTGHHGF---ILHSQDQDKSRWEMPASLASYAAQDKQAR 191 P E A+ HH + + DQ +S+ + + + Sbjct: 103 ----------PREEIQLLYSAILFHHNREDLLSYEIDQIRSQLQEMSEDVKQMWEIICMN 152 Query: 192 EEWISVLE------ALFLTPAGLSINDIPPD-----------CSSLLAGFCSLADWLGSW 234 + +L L + P D LL G + D+ S Sbjct: 153 PQQYPLLNQKKIYFDSNLYFEDSFYQEFPVDILNPKECEKAVFYILLKGLLNRIDYAASA 212 Query: 235 TTTNTFLFNEDAPSDINALRTYFQDR-QQDASRVLELSGLVSNKRCYEGVHALLDNGYQP 293 + L T+ QD + SR +E S Sbjct: 213 HIPVEHKND----FLEKGLETFMQDLNVERTSRGMEKSDW-------------------- 248 Query: 294 RQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAM 353 LQ + + ++ A TG GKTE L + F LP + +A+ Sbjct: 249 NNLQEYMKSHQEDN--VIVVAQTGLGKTEAGLWWI-------GDHKGFFILPLRTAIDAI 299 Query: 354 LTRME-ASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNK 412 R++ + L L HG S ++L + E+ +E +W + K Sbjct: 300 YDRIKNKIIKNDRVEERLALLHGESLESYL-------QLWEKEKELQEGSGFEWENYYIK 352 Query: 413 -KVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKA 471 + + +CT+DQ+ V + + + S +++DEV Y + G L L Sbjct: 353 TRQLSLPLTICTLDQLFPFVFRYRGYEAKLATMAYSKVVIDEVQMYGPDLVGFLIVGLTM 412 Query: 472 QADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHP 531 +GG +L+AT P K + + +E + P + R + Sbjct: 413 IQKMGGKFAILTATFPGFIKDLMRE------QGLEFKMSTPYV-----KEESRHSVQWIQ 461 Query: 532 EQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELN 591 +++ F ++ +V +ICN V Q Y L E Sbjct: 462 KEINADFILEK----------------------YKNNRVLVICNTVKRCQEIYHDLYEKM 499 Query: 592 NT-----------QVDIDLFHARFTLNDRREKENRVISNFGK-----NGKRNVGRILVAT 635 +++LFHA+F DR +E ++ FG N + I +++ Sbjct: 500 EISQEKLLSHDIMDRELNLFHAKFIKKDRAIREKAILE-FGSLLKQDNTPNDRQGIWISS 558 Query: 636 QVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGR 695 VE SLD+DFD LIT+ + LFQR+GR R R F V G G Sbjct: 559 SAVEASLDIDFDILITELSDMNSLFQRMGRCFR-GRILETGDFNCYVFDGGDKKCSGIGY 617 Query: 696 HEHIYSNVRVMWRTQQHIEEL--NGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMD-- 751 + ++ + + ++ ++ Y +++ ++ D Sbjct: 618 S----IQEEIYEISKNDLRQHFSTNGNILTEKEKMDLVEQTYSKEKLEPTKYYKEVKDFI 673 Query: 752 -------KFESAECEKRFKARKVL--QWAEEYSLQDNDETILAV 786 E + E +F+ R +L + Q N E I + Sbjct: 674 KNPSLYLPNEMSAKEGQFRFRNILSERIIPLPVYQQNIEEIRKI 717 >UniRef50_B7R551 CRISPR-associated helicase Cas3 domain protein n=1 Tax=Thermococcus sp. AM4 RepID=B7R551_9EURY Length = 868 Score = 285 bits (730), Expect = 4e-75, Method: Composition-based stats. Identities = 136/723 (18%), Positives = 261/723 (36%), Gaps = 91/723 (12%) Query: 73 LHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSL 132 +HD+GK + FQ + L G + H + W + + Sbjct: 85 IHDLGKITLDFQRRLYGKGKLPEELREYLTG---SESIRARHEILSVLWSAGLLGNSEQD 141 Query: 133 GDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSR---------WEMPASLASY 183 + AV HH S+D++ S + + L S Sbjct: 142 AKIRT-----------------AVLLHHYNEFFSEDKEFSHIVELYPDDIEKYLSFLVSK 184 Query: 184 AAQDKQAREEWISVLEALFLTPA-GLSINDIPPDCSSLLAGFCSLADW---LG---SWTT 236 ++ ++I +E+ F ++ ++ D S + +A+W L S Sbjct: 185 KGILEEFLRDYIKAIESEFKEDFIKKAVAEMTIDFSHIETIKEKVANWDDDLSEEVSLYN 244 Query: 237 TNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQL 296 +F + + Y + + L L + E + + + ++ Sbjct: 245 PESFDVDFLVFLGMLRRCDYSSSGNFEIEKSLNLLEVFD--DVNERIRRKILEKLRTHEV 302 Query: 297 ------QVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATA 350 Q + + + L V+ APTGSGKTE + +A + +++ LP + Sbjct: 303 NFGGLWQEELLSKKDSDYLVVV-APTGSGKTELGILWA------RKKGKLLYTLPLRVAL 355 Query: 351 NAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQS 410 N + R+ F + L H + ++ S + ++ + Sbjct: 356 NDLYKRLSEEY---FDKDLVGLLHSTAFMEYVEGSGSDIEVEKK--------------VN 398 Query: 411 NKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLK 470 + + + T DQV ++ L S ++VDEV AY M + L+ Sbjct: 399 AAGLLAMPVMLSTPDQVFLTGLNYYGADKVISVYPESAIVVDEVQAYTPEMTAVFLKTLR 458 Query: 471 AQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAH 530 + GG V++++ATLP + L D +E + + L L+ Sbjct: 459 LIKEAGGKVLVITATLPPHIEYFLRREGFEIVDVLEESKRHGLNVKNLRLKRHHVKLVE- 517 Query: 531 PEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKEL 590 F + + + L+ +E ++ N V A Y+ + + Sbjct: 518 ----GNLFKYTNDGLKFEGLEKVLSAIEEFEKQ--GFKSTMVVLNNVKKAIEAYKLISKQ 571 Query: 591 NNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLI 650 N ++ L H+R K+ VI + ++ +LVATQVVE S+D+DFD +I Sbjct: 572 GN-GWEVYLLHSRLP----ERKKAEVILRVKSSLEKGKKVVLVATQVVEASVDLDFDAMI 626 Query: 651 TQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNV---RVMW 707 T+ P D QR GR++R+ + P + G +Y +V+ Sbjct: 627 TEISPIDSQVQRWGRVYRNRKTDYTG---APNIIVFSGVDRG---TRAVYGRKIGDKVLQ 680 Query: 708 RTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDE-PEWVGNGMDKFESAECEKRFKARK 766 +T + I L G +L + D R ++ +Y D + + VG ++K + EK+ +A++ Sbjct: 681 KTAEVIGALEGRTLGYEDE-RDTIEKVYRDEILQVYRKQVGELLEKLDYFTLEKKSEAQR 739 Query: 767 VLQ 769 V + Sbjct: 740 VFR 742 >UniRef50_Q2RHQ9 CRISPR-associated helicase Cas3 n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RHQ9_MOOTA Length = 917 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 129/730 (17%), Positives = 225/730 (30%), Gaps = 132/730 (18%) Query: 7 ICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAW 66 + +W KS+ L H DV A L N + L + Sbjct: 1 MADFWAKSNGIS--------LSKHTGDVLAATGVL---QKKLGNKVPGDWWLGLKYA--- 46 Query: 67 LLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDS 126 LHD GK D FQ + + K + H L++ ++ Sbjct: 47 ----ALLHDSGKVDPAFQERIKKQGQKAGDVPAD-----EPKYKDIPHSILSLFFVRPEN 97 Query: 127 LSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQ----DQDKSRWEMPASLAS 182 + PY ++ V HH Q+ + L Sbjct: 98 FTF-------------SQPYLAYAVISAIVF-HHWRESFPDYFLGSQEYLIRKKAGELEE 143 Query: 183 YAAQDKQAREEWISVLEALFLTPA-GLSINDIPPDCSSLL-------AGFCSLADWLGSW 234 AA + + ++ L L ++ + + L AG Sbjct: 144 RAALWNRLSRDLVAELTILAEKYELDPAVMGLNTTLTEYLRYNTLGSAGLLI-------- 195 Query: 235 TTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPR 294 +R + + ++G + + + + G Q Sbjct: 196 -------PPYTLVYLPEQIRAKAARGDEKDRARVFIAGNLMRADHFASMVEESNTGLQID 248 Query: 295 ---------------------------QLQVLVDALPVAPGLTVIEAPTGSGKTETALAY 327 Q Q + V+ APTG GKTE A + Sbjct: 249 AIESGRVFTTGEIERTLKEKFNTPDYWQKQFFQNHKEAKGDNLVLVAPTGFGKTEFAFLW 308 Query: 328 AWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLF--SSPNLILAHGNSRFNHLFQS 385 LP +A N + R L + L H ++ + Sbjct: 309 -------GAEKKNFILLPMRAAVNKIWERTRDMVESLGEKGDDQVALLHSDAALETFSRY 361 Query: 386 IKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIG 445 + + + ++ + + T DQV + L + Sbjct: 362 QQQGDLESESNTRKAMELA--------RHLARTYIIATADQVAPAALRYPGYERIFAALM 413 Query: 446 RSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPV 505 L++DEV AYD ++ +++ A +GG+ ++++ATLP ++L+ GL V Sbjct: 414 NGALVIDEVQAYDPRAAAIITHLVQQNAYLGGNNLIMTATLPPFISRELVKRLGLADHQV 473 Query: 506 ENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAAN 565 P + R H + + +I AA Sbjct: 474 IRLIDEPEFEGVAASCRHRLGFNVHAG-------------------DYASAVTAIIRAAQ 514 Query: 566 AGAQVCLICNLVDVAQVCYQRLKELNNTQ---VDIDLFHARFTLNDRREKENRVISNFGK 622 G +V ++ N V A Y ++ + + ++ L H+RF L + E E V+ + Sbjct: 515 QGKKVLVVMNTVRAACEIYDKIMAVLQQEQLAIETLLLHSRFILKQKEELEKAVVEKYMP 574 Query: 623 N--GKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEI 680 N + I+VATQ+VE SLD+D D L T+ PAD L QR+GR+ R + Sbjct: 575 NRPDRDAGPCIVVATQIVEASLDIDADVLFTEPSPADSLIQRMGRVFRRFARLTGNNAPP 634 Query: 681 PVATILLPDG 690 I++ +G Sbjct: 635 EANVIIIING 644 >UniRef50_Q74N41 NEQ022 n=1 Tax=Nanoarchaeum equitans RepID=Q74N41_NANEQ Length = 755 Score = 280 bits (717), Expect = 1e-73, Method: Composition-based stats. Identities = 152/782 (19%), Positives = 279/782 (35%), Gaps = 127/782 (16%) Query: 61 QRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLY 120 + K + I LHDIGK FQ + P +P +H Sbjct: 35 ETEKKLFDYLIELHDIGKCRKEFQEYIKKLEKGEKPKSPG------------SHSLWS-- 80 Query: 121 WFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASL 180 L + E + HH + S +K + ++ + Sbjct: 81 -----------LEELERILSKIDLDKEYLPLLFYFIAKHHSNLSLSNTDEKLKRQIAKLI 129 Query: 181 ASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTF 240 E + + + F + + LAD Sbjct: 130 LKLNNLLNNQPEIDLLLNQGFFEIYYKGLLKKFEKEE------LIKLAD----------- 172 Query: 241 LFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLV 300 LF SDI + + + ++ + K ++ + + Q + Sbjct: 173 LFGVFKISDILSAKN----ILDKVNEIVYKEEITERKVEQLIGRSIDEERW---GFQKCL 225 Query: 301 DALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEAS 360 + APTG GKT TAL +A + + + LPT +++ + Sbjct: 226 SKFDY----LSLRAPTGWGKTTTALLFALN----KDYNKIFITLPTITAIEDFRQKLKNA 277 Query: 361 ASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIG 420 F +RAI ++ E + S + I Sbjct: 278 GFKA---------------EEYFYFYDARAILDEEDE-------RLNSLYFVQNLYSPIN 315 Query: 421 VCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADV-GGSV 479 + TIDQ+L+S L F++ L + +S+LI+DE+H M LL+ +L+ + + Sbjct: 316 ITTIDQILLSFLQAGKYFMKRLNLRKSILIIDEIHLLTPQMLFLLKKLLEHLVPLYKIRL 375 Query: 480 ILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFS 539 +L+SATLP L + + + V+ P + R Sbjct: 376 LLMSATLPKGIIDYLSENINIKFEFVDIYELEP--------------------KYRNRER 415 Query: 540 IQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDL 599 ++ E I +ER++ G V +I N V+ A Y+RLKE N +I L Sbjct: 416 VEIELIKK----DISENIERIVEENKKGKSVLVIANTVEKAVCIYKRLKEEYNIN-NISL 470 Query: 600 FHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLL 659 H RF R+E+E + G ILV+TQV E SLDVDFD L T+ P + Sbjct: 471 LHGRFMFKHRKEREREIRDLLENKG------ILVSTQVTEVSLDVDFDVLFTEAAPISAI 524 Query: 660 FQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGA 719 QRLGR++R+ +K + + I D R + N+ + ++ + +EEL+ Sbjct: 525 VQRLGRVNRYGKKSKSKVYIYYPKEI---DKIEEDRRKKYPYNIEEIKKSWKFLEELDNF 581 Query: 720 SLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDN 779 + + +D ++ + + F+ E + K++ + W + + ++ Sbjct: 582 K---EGIFIKKIDEVFTKEFYE--GLIKGEEIFFKFREVFEDRKSQNNIHWFLQSTSEEV 636 Query: 780 DETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKR 839 + +L RD ++ ++PY L++ ++Y++++ + + WK+ Sbjct: 637 GKKLLD-FRDN-VTTLIIPY------GDLVEAEIYDEITKILEEYKKLKEKPYSYDEWKK 688 Query: 840 SF 841 F Sbjct: 689 FF 690 >UniRef50_A8L914 CRISPR-associated helicase Cas3 n=5 Tax=Actinomycetales RepID=A8L914_FRASN Length = 811 Score = 278 bits (712), Expect = 5e-73, Method: Composition-based stats. Identities = 159/840 (18%), Positives = 265/840 (31%), Gaps = 140/840 (16%) Query: 38 ADCWWDQSVVLQNTFCR--------NEMLSKQRVKAWLLFFIALHDIGKFDIRFQYKSAE 89 A+ + S +++ R + ++ R W+ LHD GK FQ + Sbjct: 9 AELLTEHSAAVRDAARRVAERIGPAGPIAAEPRFWTWVEQAALLHDAGKVAEGFQRQVR- 67 Query: 90 SWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESW 149 H L + N + A H Sbjct: 68 ---------------PRGTVWGERHEILSLAYVNLLIGGPAEQDRLMAAAGVAFHHRSL- 111 Query: 150 FPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLS 209 V+G HG L + + WE A + + + E + L Sbjct: 112 -----TVSGGHGTGLAASYPQNADWERRFGRDPDAPRGARIQVTPPRHRELIAWFTGELG 166 Query: 210 INDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFN--EDAPSDINALRTYFQDRQQDASRV 267 +PPD L W + + A R Q A + Sbjct: 167 SAPLPPDGRKL-------------WEHARELFLATHDTWIDGVPANRGLLAVLLQGAVTL 213 Query: 268 LELSGLVSNK--RCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETAL 325 + SG R L QP Q A + ++ APTGSGKTE L Sbjct: 214 ADHSGSAHVPLQRHMPLPRGFLHRLEQPYGHQRAAAA---SGSHLILVAPTGSGKTEAGL 270 Query: 326 AYAWKLIDQQIA-DSVIFALPTQATANAMLTRMEASAS------------------HLFS 366 A+A ++ +++ LP +A+ +A R + Sbjct: 271 AWASAQLENMPGEPRLVWVLPYRASIDAAADRFTRDLDPPSDPCPEPGESSEYPSTVVAR 330 Query: 367 SPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQ 426 SP++ + H + ++ +RA+ + ++F ++ V T Q Sbjct: 331 SPDIGVLHATA-----AATLLTRAVADDCPPSPASARKARARAQAMRLFAQRVRVATPHQ 385 Query: 427 VLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATL 486 +L + + L ++ ++DE+HAYD G + A L +G + +LSATL Sbjct: 386 LLRAAIAGPRYSSVLLEQANALFVLDELHAYDPETFGRICAALGMWDHLGSRIAVLSATL 445 Query: 487 PMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPIC 546 + D+ G H D V + R + +PI Sbjct: 446 AKPMIDLVEDSLGGHVDLVRAPAG--------------------TAPDRHRLVLDEQPIT 485 Query: 547 LADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVD-----IDLFH 601 D L ++ G V ++ N V VAQ +Q L L H Sbjct: 486 APDNLRAIS------RWMTEGHSVLVVANTVRVAQQLFQALAPAAREAWPDDPDAAILLH 539 Query: 602 ARFTLNDRREKENRVISNFGKNGKRNV----GRILVATQVVEQSLDVDFDWLITQHCPAD 657 +RF DR E+R+ + + + G ++V+TQV+E SL +DFD +++ P + Sbjct: 540 SRFKGRDRARIEHRITTRHPERSAGDPALRQGGLVVSTQVLEVSLCLDFDRGVSELAPIE 599 Query: 658 LLFQRLGRLHRHHRKYR-PAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEEL 716 + QR GR++R R P F + LP E ++ W +H Sbjct: 600 AVAQRAGRVNRRGRHPDGPVEFRVHRTDSALPYQE---------ESLDAAWAAMRHTAA- 649 Query: 717 NGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGM--------------DKFESAECEKRF 762 GA WLD +Y + +W FE R Sbjct: 650 -GAQAISEQTVEDWLDHVY--STPWGEQWAATARQARDAFAASFLTFHRPFEDRSEFARS 706 Query: 763 KARKVLQWAEEYSLQDNDETILAVTRDGEMSLP---LLPYVQTSSGKQLLDGQVYEDLSH 819 + + + LA T DG+ L L+P + DG ++ + Sbjct: 707 LDENFDTVQVLHRDDEAEYRTLADTDDGDPLLAEGLLIPLRWPQLARLRRDGHAADNRTL 766 >UniRef50_C8S7A2 CRISPR-associated helicase Cas3 n=1 Tax=Ferroglobus placidus DSM 10642 RepID=C8S7A2_FERPL Length = 542 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 129/585 (22%), Positives = 221/585 (37%), Gaps = 119/585 (20%) Query: 285 ALLDNGYQPRQLQVLVDA----LPVAPGLTVIEAPTGSGKTETALA--YAWKLIDQQIAD 338 + G++P Q L G+ VI+APT SGKTE A+A +A + Sbjct: 6 FYRNLGFEPYDHQKEAFEKIYSLSEDGGVVVIKAPTASGKTEAAVAPYFAGVYTGEYPFA 65 Query: 339 SVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEE 398 +I+ LPT+A ANA R+E A L +++ HGN Sbjct: 66 KLIYVLPTRALANAQKDRLEELARKLGLKLKIVVDHGNV--------------------- 104 Query: 399 AWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGL----GIGRSVLIVDEV 454 +K + G + VCT+D + ++ R I S++I DEV Sbjct: 105 -----------YDKPMLNGDVVVCTLDTFIYGYASLRTFGYRLHYPTSSIATSLVIFDEV 153 Query: 455 HAYDT---YMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAY 511 + Y ++ + K + ++++ATLP K ++ L + + D Y Sbjct: 154 QMFQDEEYYTPKIIGRIFKYLYNSRVPFVVMTATLPEKLEKILFEDNRVKVDEENVIVCY 213 Query: 512 PLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVC 571 R + D + L L + +V Sbjct: 214 -------------------------RSKRGSVNVGWLDKIL-LESLNSFVDEIANTKKVG 247 Query: 572 LICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRI 631 +I N V Q Y+ LKE + +I L H+R T +R ++E + I Sbjct: 248 IILNTVPRVQKTYELLKEHLKNEKEIILLHSRMTAQEREKREKMLQEL--------DEFI 299 Query: 632 LVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGE 691 +VATQV+E LDV + ++T+ PAD L QR+GR+ R E A I Sbjct: 300 VVATQVIEAGLDVSLNLMLTELAPADALIQRIGRVARRE-------NEEGNAIIF----- 347 Query: 692 GYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMD 751 G YS+ +++ +T+ +EE+ G L + ++ ++ +Y++ E+ + Sbjct: 348 DVGESFEPYSD-KIIKQTRDVVEEI-GECLNNLNKTQEIVNRVYENVEIQYNPLLI---- 401 Query: 752 KFESAECEKRFKARKVLQWAEEYSLQDNDE---TILAVTRDGEMSLPLLPYVQTSSGKQL 808 + E F ++ E+ L+ E T+ TR L+ ++ + K Sbjct: 402 -----QAELYFDELRLFALPPEFELRVRPELYATLFVPTR------ELVDLIKDEAKKNW 450 Query: 809 LDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWL 853 E + + N NV +W RS +D++ L L Sbjct: 451 -----NEKTDVRRLDLRIKDNSFNVSISWLRSK---LDQNKELLL 487 >UniRef50_D1A6P6 Metal dependent phosphohydrolase n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1A6P6_THECD Length = 1027 Score = 272 bits (694), Expect = 6e-71, Method: Composition-based stats. Identities = 163/897 (18%), Positives = 284/897 (31%), Gaps = 156/897 (17%) Query: 12 GKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFI 71 GKS + G LLI H + V + A ++ R ++ + A Sbjct: 242 GKSKAASKLGRPE-LLIEHSVTVRSAAQAVAERIGSPGILADRPGFWTQVEIAAL----- 295 Query: 72 ALHDIGKFDIRFQYKSAES---------------WLKLNPATPSLNGPSTQMCRKFNHGA 116 LHD GK FQ + L P + + F+H Sbjct: 296 -LHDAGKVAEGFQNQLRPGGEPWGERHEVLSLAYADLLTRHLPESDRTMIAVGVAFHHRP 354 Query: 117 AGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEM 176 + F P + P V+ H +L ++ + Sbjct: 355 LISASGRDLREMYPPEAAWERKFGRDPDAPPT-RPRVQVTPARHAALLRWL---AAQLGI 410 Query: 177 PASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPD---CSSLLAGFCSLADWLGS 233 P + AR+ + + A +PP+ + LL G +LAD GS Sbjct: 411 PPPEPDGRRLWELARDAFARLHAAW--------RGRVPPEDGLVAVLLQGAVTLADRSGS 462 Query: 234 WTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQP 293 + V + + +R + A P Sbjct: 463 -------------------------------AHVPLQTHMPLPRRYITTLPA-------P 484 Query: 294 RQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIAD-SVIFALPTQATANA 352 Q G V+ APTGSGKTE LA+A + +D +++ LP +A+ +A Sbjct: 485 YPHQRAAAETT---GHLVLCAPTGSGKTEAGLAWASRQLDDMPGRPRLLWVLPYRASIDA 541 Query: 353 MLTRMEASASHLFS--SPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQS 410 R S P++ + H + +++ +RA T+ + Sbjct: 542 ARDRFIKSLLPAPGQKKPDIGVLHATA-----ARTLLARATTDDCPPGPRQARKARDQAA 596 Query: 411 NKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLK 470 ++F +I V T Q+L + L +++ +DE+HAYD G L A ++ Sbjct: 597 AMRLFAQRIRVATPYQLLRGAIAGPSHSSVLLEQANALIALDELHAYDPATFGRLCAAMR 656 Query: 471 AQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAH 530 +G V++LSATL L D ++ Sbjct: 657 LWQMLGSRVVVLSATLAPPMIDLLKD---------------------TLDQVTVHRAPPG 695 Query: 531 PEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKE- 589 R + +PI L+R+ G V ++ N V AQ Y+ L Sbjct: 696 TAPDRHRLVLDDQPITAPQ------SLDRIRRWLTEGHSVLVVANTVATAQRLYRELAGH 749 Query: 590 ----LNNTQVDIDLFHARFTLNDRREKENRVISNFGKNG---KRNVGRILVATQVVEQSL 642 L + L H+RF DR E R+ + + G ++VATQV+E SL Sbjct: 750 ARAVLPDDPDAAILLHSRFRAEDRAAIERRISTRHPERAVGENTRRGGLVVATQVLEVSL 809 Query: 643 DVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSN 702 +DFD +++ P + + QR GR++R R + + +P+ + Sbjct: 810 CLDFDRGVSELAPIEAVAQRAGRVNRRGRHPDG----VVEFRVHMPE-------SALPYE 858 Query: 703 VRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRF 762 + + + + WL YD EW G AE ++ Sbjct: 859 EGALDAALSALRN-TPSPVISEQTVETWLRHAYD------TEW---GRQWASQAERYRKE 908 Query: 763 KARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQ 822 L + + + D T A D + + L + D Sbjct: 909 FFESFLTFCDPFH----DRTEHATGLDEAFDSIEVLLESDAEEYSLRSSGPHGD------ 958 Query: 823 YEALALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGM 879 L + +++ + +G L+ ++ I Y+ + G+ Sbjct: 959 ----PLQAAGLLIPLRKAQIHRLHRNGRAHLDRERARRERRPPLWLINAPYSEETGL 1011 >UniRef50_Q7MTF0 CRISPR-associated helicase Cas3 n=1 Tax=Porphyromonas gingivalis RepID=Q7MTF0_PORGI Length = 778 Score = 272 bits (694), Expect = 7e-71, Method: Composition-based stats. Identities = 140/708 (19%), Positives = 253/708 (35%), Gaps = 112/708 (15%) Query: 74 HDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLG 133 HDIGK + +Q + + S + AG + Q + + Sbjct: 66 HDIGKRNKIWQDACKKDYKAYLIWKKIHPNKSFEDYTIECREEAG-KFLRQTHVRHEFYS 124 Query: 134 DFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREE 193 + P + A+ HH + + RW +D Sbjct: 125 IKGLLNNNPPPNNNPPYWLKIAIAAHH---RKLSMKHEERWLSSDEDICSVWKD------ 175 Query: 194 WISVLEALFLTPAGLSINDIPPDCSSLLAG---FCSLADWLGSWTTTNTFLFNEDAPSDI 250 I L F ++DI AG LAD S + + + A Sbjct: 176 -IRRLSNYFFDDRNSVLSDI-AIKQYEFAGPRSLLQLADHRASAKEESKCIPDPIA---- 229 Query: 251 NALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLT 310 ++ R +Q LV+ L Sbjct: 230 --------------------------------FSYTFPEKWEKRPVQKLVEKH-WRDELL 256 Query: 311 VIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNL 370 ++ APTG+GKT+ AL +A I + AD +I A+PT+ T NA+ + S + + Sbjct: 257 LVRAPTGAGKTDAALLWASHQIKHRKADRLIIAMPTRFTTNAL------ALSVSSTLSST 310 Query: 371 ILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLIS 430 L H ++ + I E A Q + +Q+ ++ I VCTID +L S Sbjct: 311 GLYHSSAWTQNFSSKI-------DNGEIALEQARYYHNQA--RLLQTPITVCTIDHLLSS 361 Query: 431 V-LPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMK 489 + L + + + L++DE YD + + +L+ ++L+SA+LP Sbjct: 362 LTLCDEEHQTITFALANACLVIDEADFYDQFTQANILVLLEVLKYWKVPILLMSASLPDN 421 Query: 490 QKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLAD 549 Q+ +R + + L + RFS+ + Sbjct: 422 IVQE----------------------YRKIGYDIKHILEDTSDIERARFSLIEKR----- 454 Query: 550 MLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDR 609 + +++ ++ ++ + N VD AQ YQ E N + ++ L+H+R+T D+ Sbjct: 455 DVSEISQMQDLLQLCLDRGSAIIFANTVDRAQAYYQWFLE-NGHEEEVILYHSRYTETDK 513 Query: 610 REKENRVISNFGKNGKRNVG--RILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLH 667 EKE +++ G++ N + + TQ+ E S+++ D +I+ CP D L QR GRL Sbjct: 514 IEKEAQLLLRLGRSAWDNDRANGVAILTQIGEMSVNISADIMISDLCPIDRLTQRCGRLC 573 Query: 668 RHHRKYRPAGFEIPV---ATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFP 724 R RK P+ P + G + + N ++ T + +E+ ++ Sbjct: 574 RFSRKIGDLYIIRPMREGNLFPAPYYQNVGPSQKLEPNDALIQ-TDELLEK----GMYSA 628 Query: 725 DAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAE 772 Q L+ +Y + + E N + FKA ++ E Sbjct: 629 ANLVQLLNKVYANQTVFSTEASRNA------DRLREMFKANWLINPIE 670 >UniRef50_Q8F1E6 ATP-dependent RNA helicase, putative n=2 Tax=Leptospira interrogans RepID=Q8F1E6_LEPIN Length = 752 Score = 271 bits (692), Expect = 9e-71, Method: Composition-based stats. Identities = 137/757 (18%), Positives = 247/757 (32%), Gaps = 103/757 (13%) Query: 20 KGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKF 79 LL +H VA+ + + R + + LHD+GK Sbjct: 19 DPESWALLEHHSSATYQVAEVLLKILEPILRKWTRLSESEYNKFVLVVCLSAGLHDLGKA 78 Query: 80 DIRFQYKSAESW------------LKLNPATPSLNGPSTQMCRK--FNHGAAGLYWFNQD 125 + FQ L L + P + + + G G+ + Sbjct: 79 NEDFQKMLQRRKYLQRFRHEIWSVLALTGSGPFSDWFRKTIGDETWVRIGQMGILSHHLK 138 Query: 126 SLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAA 185 + E D + + +++ + D S + + Sbjct: 139 ATRETLYADHETAEIKVFWKDQGVIKTFQSIC----RLAGISSPDFSSSSISSYTCLGED 194 Query: 186 QDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNED 245 DK R W + + P AD L S Sbjct: 195 ADKSIRI-WTREILNARIDPRYQHSIGAVRA-------MIIAADRLASAYK--------- 237 Query: 246 APSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPV 305 +AL+ + ++ L + L + +P Q QV Sbjct: 238 ---GADALKLWAEEALNRV--------LSEQECSKIVKQGLGEKNLRPFQKQVG----DS 282 Query: 306 APGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLF 365 +T++ A G+GKT A +A + F PT TA E ++ Sbjct: 283 TSRVTLVRAGCGNGKTIAAFQWAKTHSA---GRKLFFCYPTMGTAT------EGFRDYVS 333 Query: 366 SSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTID 425 P L +SR + + S ++G + + + Q+ CT+D Sbjct: 334 DIPGLDALLSHSRASLDLGELASTGEEDEGD-------SLNMHSRMLQEWTAQVTFCTVD 386 Query: 426 QVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSAT 485 Q+L + + I + DE+H YD+ + G L LK + S++L++A+ Sbjct: 387 QILGLLQNYRSSLTLSPAIFLGAFVFDEIHMYDSILFGNLLTFLKEFSH--TSILLMTAS 444 Query: 486 LPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPI 545 LP + +T G PV + A E+L R Sbjct: 445 LPETMLSAIQETVGADLGPVISGEAQ------------------IEERLRYRILHSSRE- 485 Query: 546 CLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFT 605 L++ I G +V +CN V+ Y L E ++ ++H+RF Sbjct: 486 ---------DALQKAIQEFKNGGRVLWVCNKVEHCLKLYDELSEKY--DIEALVYHSRFK 534 Query: 606 LNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGR 665 DR+E+ VI +F + K+++ + TQV E SLD+ LI++ CP L QRLGR Sbjct: 535 YEDRKERHRAVIDSFQEGYKKSLPVFAITTQVCEVSLDISATLLISELCPFAALIQRLGR 594 Query: 666 LHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPD 725 ++R ++ I I+ G+ Y + + R ++ ++ L L D Sbjct: 595 VNRPGQEMEG----IAQVLIIPFQGKPYEKENED-DGESELERCKEILKPLLDRELSQKD 649 Query: 726 AYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRF 762 ++ + + +W+ G + + E + Sbjct: 650 LALALENAKGTEHQKIPSQWLSLGWEAKPDSIRESGY 686 >UniRef50_C9XQV8 Crispr-associated helicase cas3 n=2 Tax=Clostridium difficile RepID=C9XQV8_CLODC Length = 661 Score = 267 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 107/488 (21%), Positives = 196/488 (40%), Gaps = 81/488 (16%) Query: 268 LELSGLVSNKRCYEGVHAL-LDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALA 326 + +G+ S + + + + G +Q V + + ++ A TG GKT T+L Sbjct: 161 IASAGIKSIDKGFNSIKDFSIPKGVSYNSIQEKVLNMDKNEDIMIM-AMTGLGKTATSLY 219 Query: 327 YAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSI 386 ++ + ++ + V + LP A+ N++ + + ++ + H + + Sbjct: 220 WSNLVQNEYKSKRVYYILPYTASINSLYENLYN------RNISVSMLHSKAPY------- 266 Query: 387 KSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGR 446 + + EE Q Q +S K QI VCTI Q++ SV K + + Sbjct: 267 ---FLNKISDEEDIKQLYQIYKKSVK-----QINVCTIFQLVKSVFSCKRFEMLLSQLKD 318 Query: 447 SVLIVDEVHAYDTYMNGLLEAVLKAQA-DVGGSVILLSATLPMKQKQKLLDTYGLHTDPV 505 S+ IVDE+H +DT + LK ++ + ++SA++P K+ + + + T Sbjct: 319 SIFIVDEIHCFDTRVLCYTLEFLKYLKENLNVKICIMSASIPTCLKKLIQERLQIST--- 375 Query: 506 ENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAAN 565 +I + R L E + L + ++ Sbjct: 376 -------IIEPDSKDLIFRHRLNRLSEGI-------------------LDSIHKIENDLM 409 Query: 566 AGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGK 625 G +V + N VD++Q Y RL++ N L H RF DR + E + +F Sbjct: 410 QGKRVLICVNSVDLSQELYGRLQKYNPK-----LIHGRFNTRDREQAEKGIEESF----- 459 Query: 626 RNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATI 685 +L+ TQ +E SLD+ +D L T+ P D L QR GR++R + I Sbjct: 460 -----LLIGTQSIEVSLDISYDVLYTELAPLDSLLQRFGRVNRRGDNAELSNIYI----- 509 Query: 686 LLPDGEGYGRHEHIYSNVRVMWRTQQHIEE--LNGASLFFPDAYRQWLDSIYDDAEMDEP 743 Y R +IY + ++ RT I + N S+ +LD++Y D +MD+ Sbjct: 510 -----YDYDRKLNIY-DEDIINRTDIVISDIIHNDNSIVDESKVPSYLDNVYLDIDMDKY 563 Query: 744 EWVGNGMD 751 ++ Sbjct: 564 NKHKVALE 571 >UniRef50_A8UTP5 Putative uncharacterized protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UTP5_9AQUI Length = 568 Score = 265 bits (678), Expect = 4e-69, Method: Composition-based stats. Identities = 113/589 (19%), Positives = 211/589 (35%), Gaps = 92/589 (15%) Query: 284 HALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFA 343 + L + LQ V L ++ A TG GKTE + D F Sbjct: 67 YLLAKKNSELNDLQKFV--LENREDNLLVVASTGYGKTEAGFIFL--------KDKGFFT 116 Query: 344 LPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQC 403 +P + +ANA+ R A +FS + L H + L S R +++ + Sbjct: 117 IPIRTSANAIFGR----AREVFSEEEVGLLHSTAPLFLLENSEDRR-----NFDKSTIVS 167 Query: 404 CQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNG 463 +L+ K F + V T DQ+ V K S +++DEV ++ G Sbjct: 168 DIFLT----KNFAKPLIVSTPDQLFPFVFRPKGFEKFLSLFSYSRVVIDEVQLFEPQTLG 223 Query: 464 LLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQ 523 L ++ GG V++++ATLP ++ L G Sbjct: 224 FLVKAIEKAHQFGGKVMVMTATLPSYVRRDL-------------------------QGID 258 Query: 524 RFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVC 583 + + + + P I + L ++I + + + +I N A Sbjct: 259 LKEGRFITDTVRHNVKLIPMSITSGEGL-------KLIKSLSERGKALVITNTRTKALE- 310 Query: 584 YQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLD 643 LKE ++ H+ F DR++KE + F K + + TQ+ E SLD Sbjct: 311 ---LKEALGVG---EVLHSWFIQKDRKKKEEEIKDFFDSEEK----GLWITTQIAEVSLD 360 Query: 644 VDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNV 703 +D D+LIT+ AD L QR+GR +R K + P + + G G +Y Sbjct: 361 LDADFLITELSTADSLLQRMGRENRKGVK----PVDEPNVFVFTEECSGIGN---VY-RK 412 Query: 704 RVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVG--NGMDKFESAECEKR 761 + T++ ++E L + +++ +Y E + E++ ++ R Sbjct: 413 SIHEITKEKLKE----GLIDEEWKLGFVEEVYSALEERDREYISKYEEAKRYIDDLWVLR 468 Query: 762 FKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQ 821 K + E + ++ I V R + P V+ ++ + + + Sbjct: 469 EKFFNKREAQEMFRDVLSEVVIPEVFRG-----EVEPLVEEYLQER-------DTIRKLE 516 Query: 822 QYEALALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIV 870 + + ++P+ + V G+ W G + + +G Sbjct: 517 LFSEVLGYTFSLPYYREVRLQPVRGLKGIFWASGNYSSETGFVEGEGGG 565 >UniRef50_B5YBH9 CRISPR-associated helicase Cas3 n=1 Tax=Dictyoglomus thermophilum H-6-12 RepID=B5YBH9_DICT6 Length = 801 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 109/525 (20%), Positives = 202/525 (38%), Gaps = 68/525 (12%) Query: 277 KRCYEGVHALLDNGYQPRQLQVLVDALP----VAPGLTVIEAPTGSGKTETALAYAWKLI 332 KR ++ N + Q +++ L + +PTGSGKT T A+A KL Sbjct: 242 KRETFKDNSDEINLLREEIFQKVINKLKEIDISKNKIFTFTSPTGSGKTLTGFAFAVKLR 301 Query: 333 DQ-----QIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIK 387 + +I++LP + N + S L GNS + Sbjct: 302 KRIEKEFGYTPRIIYSLPFISIINQNYDVLRNVLSKLPDFE------GNSSAYIISHHHL 355 Query: 388 SRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGL-GIGR 446 S+ E+G E V L +S + ++ V T Q+L +++ K+ F++ I R Sbjct: 356 SKVEYEEGDELREVDESLALIESWE----SEVIVTTFVQLLHTIIGFKNSFLKKYHNIAR 411 Query: 447 SVLIVDEVHAYDTYMNGLLEAVLKAQA-DVGGSVILLSATLPMKQKQKLLDTYGLHTDPV 505 S++I+DEV L E + K + + +IL++AT P L+ + G + + Sbjct: 412 SIIILDEVQNIPAEYWKLTERIFKLMSQYLNCYIILMTATKP------LIFSDGDTLEIL 465 Query: 506 ENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAAN 565 +NN Y + +N + + + L ++L I + Sbjct: 466 DNNEVY----FEKLNRVVLYSNVKEQKGLD-------------------SLLSWFIDIYD 502 Query: 566 AGAQVCLICNLVDVAQVCYQRLKE-LNNTQVDIDLFHARFTLNDRREKENRVISNFGKNG 624 ++ N + + Y+ LKE L+ + I A +R ++ +R+ + G N Sbjct: 503 PQKSYMIVLNTIKSSIEFYRMLKEQLSLKEKSIYYLSANIIPKERLDRIHRIKQDLGNNK 562 Query: 625 KRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVAT 684 K ILV+TQVVE +D+DFD +I P D + Q GR +R+ +K F Sbjct: 563 KP----ILVSTQVVEAGVDLDFDVVIRDLGPLDSVVQVAGRCNRNFKKENGEIF-----V 613 Query: 685 ILLPDGEGYGRHEHIYSN--VRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDE 742 L D +G +Y R+ + +E + + ++ + + + +E Sbjct: 614 FFLKDDKGRSYANMVYQKLTPRITFELFSELESVKESEFI--KIINKYFERLRFEKSQEE 671 Query: 743 PEWVGNGMDKFESAECEKRFKARKVLQWAEE----YSLQDNDETI 783 E + + ++ E ++ E+ + DE Sbjct: 672 SELIISALNNLRFYEGKEIISVSSFELIKEKGIVYPVFIEVDEKA 716 >UniRef50_A1VHS3 Metal dependent phosphohydrolase n=3 Tax=Desulfovibrio vulgaris RepID=A1VHS3_DESVV Length = 745 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 149/789 (18%), Positives = 264/789 (33%), Gaps = 146/789 (18%) Query: 8 CHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWL 67 Y+ S+ + K +D L H +VA L TF + A L Sbjct: 19 ARYYAHSTPNPDK-SDWQGLDAHLENVAN-----------LAATFAEAFGAHEWGKAAGL 66 Query: 68 LFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSL 127 LHD GK +F + +++ NH G Sbjct: 67 -----LHDAGKATAQFTQRLEGRPVRV------------------NHSLCGAR------- 96 Query: 128 SEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILH---SQDQDKSRWEMPASLASYA 184 A + A+ GHHG + + Q R + A + Sbjct: 97 ------------HAQKQGGKCGLLLSYAIAGHHGGLPDGGLQEGQLHHRLKHERLPADVS 144 Query: 185 AQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNE 244 R + VL+ F + + L + + AD+L T F E Sbjct: 145 PPSVDIRPD---VLKPPFTKLPENQVFSLSFFTRMLFS-CLTDADFL----DTEAFCTPE 196 Query: 245 DAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALP 304 A + T + + L+ + + + + + R Sbjct: 197 RASARNGRPATGLVALRDALNTHLDTVERDAAPSRVNDIRKTVLHDCRAR--------AS 248 Query: 305 VAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHL 364 PGL + PTG GKT +++A+A VI+A+P +++ + S + Sbjct: 249 ETPGLFSLTVPTGGGKTLSSMAFALDHAVTHGLRRVIYAIPF----TSIIEQNAKVFSDV 304 Query: 365 FSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTI 424 F N++ H N R ++ +E+ + + +++ + V T Sbjct: 305 FGQDNVLEHHCNYR------------SKDEPEEQGYDKWRGLAAENWD----APVVVTTN 348 Query: 425 DQVLISVLPVKHRFIRGL-GIGRSVLIVDEVHAYDT-YMNGLLEAVLKAQADVGGSVILL 482 Q S+ + R L I RSV+++DE A T Y+ L A+ + G +V+L Sbjct: 349 VQFFESLFSNRPSRCRKLHNIARSVIVLDEAQAIPTEYLEPCLYALKELVGQYGCTVVLC 408 Query: 483 SATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQP 542 +AT P L + LH +++A P++L ++ Sbjct: 409 TATQPAVDDASLPERVRLH---------------------HVREIIADPQRLYTD--LKR 445 Query: 543 EPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHA 602 + LA L D + R+ + QV I AQ + L+E Sbjct: 446 TEVTLAGRLTDAALAARL----DGHGQVLCIVGTKPQAQAVFSLLQEREGA----FHLST 497 Query: 603 RFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQR 662 RR RV+ + + +V+T ++E +DVDF + D + Q Sbjct: 498 NMYPEHRR----RVLGTIRQRLADRLPCRVVSTSLIEAGVDVDFPVVYRAMAGLDSIAQA 553 Query: 663 LGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLF 722 GR +R R P +++ + E R + R R Q+ + L A Sbjct: 554 AGRCNREGRLPEPG-------QVVVYEPEKPPRMPWM---QRCASRAQETLRTLPEADPL 603 Query: 723 FPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDET 782 +A R++ IYD E+D + + + + FK R++ A ++ D++ T Sbjct: 604 GLEAIRRYFGLIYDVQELDRKDIFKRLRGQVDK---DMVFKFREI---ANDFRFIDDEGT 657 Query: 783 ILAVTRDGE 791 L + E Sbjct: 658 ALVIPTGPE 666 >UniRef50_UPI0001C41C2F CRISPR-associated helicase Cas3 n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41C2F Length = 941 Score = 261 bits (667), Expect = 8e-68, Method: Composition-based stats. Identities = 146/788 (18%), Positives = 275/788 (34%), Gaps = 84/788 (10%) Query: 74 HDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLG 133 HD+GK FQ K +LN P+ + +KF + + SLS +L Sbjct: 83 HDVGKLSFNFQLK------RLNKNNPAKKKEQINVLKKFGLDSILNQFEGNHSLS-GALS 135 Query: 134 DFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWE-----------MPASLAS 182 ++D P + + GHH + QD ++ + Sbjct: 136 FLSKYYDVLPKNELFFLILAYVIIGHHTNLKDIVSQDDFFYKEFEENQALSTTLKFFALF 195 Query: 183 YAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLA---GFCSLADWLGSWTTTNT 239 + +++ + + +IN S + AD L + N+ Sbjct: 196 FGLNQSTINQKFFQEINDIGFDFLENTINHYDSSFSFFYSYIYSLLISADSLATSEYKNS 255 Query: 240 FLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVL 299 + + + F + V L++ + N + L Sbjct: 256 TDQIDYSKFNHRISDKLFAHMYKSFYNVKHNRNLLNETFNLNDICPEDINVLRKAMLLES 315 Query: 300 VDALPVA-----PGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAML 354 + L A + + PTG GKT T++ A ++ A+ +I+A+P Sbjct: 316 SETLNNALMDDDKKIFFLNMPTGGGKTNTSMKLALDMVKNTDANRIIYAMPFINIIEQNF 375 Query: 355 TRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKV 414 + S N+ + S I + EE + Sbjct: 376 DVICKSFGLNEEEGNIRQIYSASE-----------TIFNKSDEETLEIIL------SDDF 418 Query: 415 FLGQIGVCTIDQVLISVLPV-KHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQ- 472 F + T + ++ K R + SV+I+DE+ + L ++ Sbjct: 419 FNYPVICTTFVSLFNPIIKNNKKYKYRLNALSNSVIILDEIQSLPLRNWVSLYFIINELS 478 Query: 473 ADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPE 532 +++SATLP K KL + D N + LIN DL + Sbjct: 479 EKYNIYFLIMSATLPSFDKLKLENI--RDDDNFLNYNNVSLINNPEKYF--NHDLFSRTN 534 Query: 533 QLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNN 592 + C D ++ + E N G ++ N + +++ Y +LK+ + Sbjct: 535 INGGIKKLGINDDCSIDYFLEI-IRENFSQDYNKG---LIVLNTIKSSRLIYDKLKDFSQ 590 Query: 593 T-QVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLIT 651 DIDL ++ N R+ +++ N + IL++TQ +E +DV FD++I Sbjct: 591 EYNFDIDLLNSSILPNRRKNIIHKI------NQEDLSNYILISTQSIEAGVDVSFDFVIR 644 Query: 652 QHCPADLLFQRLGRLHRHHR---KYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWR 708 D + Q GR +R K+ + + V I L D +++IY +V + R Sbjct: 645 DFSILDSIEQVRGRCNRSRELNDKFHDSNIKGNVYLINLEDDNS-NLYKYIYKDVELKTR 703 Query: 709 TQQHIEELNGASLFFPDAYRQWLD--SIYDDAEMDEPEWVGNGMDKFESAECEKRFKARK 766 ++ I N D Q+ + + YD+ +D + V + MD+ R R Sbjct: 704 IKETINLFNEGFELNDDLNYQYSNILTYYDNVSLDIND-VHDSMDQ-----SFLRNDRRN 757 Query: 767 VLQWAE-EYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYED-LSHEQQYE 824 ++ W + +YS + I + D + +P LD ++Y+D L+ ++ E Sbjct: 758 IVFWNKMKYSKIQKKKGIHIILNDLKQYSIFIP----------LDIKIYDDSLNLDKTIE 807 Query: 825 ALALNRVN 832 + LN + Sbjct: 808 DMDLNELR 815 >UniRef50_B5GV92 Crispr-associated helicase cas3 n=1 Tax=Streptomyces clavuligerus ATCC 27064 RepID=B5GV92_STRCL Length = 838 Score = 261 bits (666), Expect = 9e-68, Method: Composition-based stats. Identities = 149/821 (18%), Positives = 260/821 (31%), Gaps = 111/821 (13%) Query: 35 AAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKL 94 AAV + + + Q +A LHD GK FQ + Sbjct: 71 AAVG--LIEDRIANAGVLADSPAFWSQVRRA-----ALLHDAGKIAEGFQRQVEPR---- 119 Query: 95 NPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVE 154 G+ W + + + D + AA + Sbjct: 120 -----------------------GIPWGERHEVLSLAYADLLA--GAAAWSEDDLTMVAT 154 Query: 155 AVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIP 214 V HH + + +L+ ++ E + + +E + P + Sbjct: 155 LVATHH---RALHNDGGTGHGGKPALSRIYNKETDWEEAFGTSVEDVDGRPVVQVPRFLH 211 Query: 215 PDCSSLLAGFCSL-------ADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRV 267 + + GF ++ D S L + + +R + A Sbjct: 212 RELLAWFCGFLAVDPPSTRPGD--PSLAQRARHLLQRLLDTWHHPVRPHRGLLAVLAQGA 269 Query: 268 LELSGLVSNKRCYEGVHALLDNGYQ---PRQLQVLVDALPVAPGLTVIEAPTGSGKTETA 324 L L+ + H L Y P G + APTGSGKTE Sbjct: 270 LTLADRSGSAHIGLQTHMPLPYDYLARLPYHPHSHQRQAAETLGHLTLVAPTGSGKTEAG 329 Query: 325 LAYAWKLIDQQIAD-SVIFALPTQATANAMLTRMEASASHLFSS--PNLILAHGNSRFNH 381 LA+A I V++ LP +A+ NA+ R+ + ++ L HG Sbjct: 330 LAWAATQIGTMPGRPRVVWTLPYRASLNAIRRRLSEDLIPVPGERKADIGLLHGTVAQTL 389 Query: 382 LFQSIKSRAITEQGQEEAWVQCCQ--WLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFI 439 L + + + ++F ++ V T Q+L + Sbjct: 390 LADGLDDDCPGREPNTPPTADQARKARAQAGAMRLFTQRVRVATPHQLLSGAIAGPAYSS 449 Query: 440 RGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYG 499 L V ++DE+HAY+ G L A ++ +G +LSATL + Sbjct: 450 VLLEQANCVFVLDELHAYEPRTFGRLCAAMRLWERLGSRFAVLSATLAEVMIR------- 502 Query: 500 LHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLER 559 +E + P+ R G+ + R ++ PI ++R Sbjct: 503 ----IIEESVEQPVTVHRSPEGS---------GPVRHRLTLDELPI------DAPESVQR 543 Query: 560 MIAAANAGAQVCLICNLVDVAQVCYQRLKE-----LNNTQVDIDLFHARFTLNDRREKEN 614 + N G V + N V AQ + +L + L H+RF DR E Sbjct: 544 IRDWLNEGHSVLAVVNTVARAQELFGQLADDARAARPGDPHAALLLHSRFRNGDRDTIER 603 Query: 615 RVISNFGKNGKRN---VGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHR 671 ++ + + G ++VATQ VE SL +DFD + P + + QR GR++R R Sbjct: 604 ALLRRHPERRPGDGALRGGLVVATQAVEVSLQLDFDRAAVECAPVEAVAQRAGRVNR--R 661 Query: 672 KYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWL 731 P G G + + W + + +GA+ + L Sbjct: 662 GLHPDGPVEFRVH------RVDGPRPYDPDAMDAAWAALRGL-VADGATALSEQDIDELL 714 Query: 732 DSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGE 791 Y EW G E A + A + L + + + D E ++ + Sbjct: 715 RRAYA------TEW---GKGWEEQARAARDAFAARFLTFTDPFH--DRSEFARELS-EAF 762 Query: 792 MSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVN 832 S +L + + L G+ + L + L L ++ Sbjct: 763 DSTEVLHHDDAEEYRALTRGKAGDPLLASRLLIPLRLGQLR 803 >UniRef50_A4X3M6 CRISPR-associated helicase, Cas3 family n=1 Tax=Salinispora tropica CNB-440 RepID=A4X3M6_SALTO Length = 801 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 151/842 (17%), Positives = 260/842 (30%), Gaps = 158/842 (18%) Query: 11 WGKS-SKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVV-LQNTFCRNEMLSKQRVKA-WL 67 W KS ++ G + A+ + S + V A W Sbjct: 12 WAKSVDRTGRTGRLGY------------AERLTEHSYATWAAAQTVAGRIGPAGVLADWP 59 Query: 68 LFF------IALHDIGKFDIRFQYKS---------AESWLKLNPATPSLNGPSTQMCRKF 112 F+ LHD GK FQ + L L G S Sbjct: 60 SFWNLVGLAALLHDAGKVAEGFQRQVKQPGHHWGERHEVLSLAYVDLFGGGLSPDERALV 119 Query: 113 NHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKS 172 G + + + +L D + A + G + Sbjct: 120 AVGVGLHHRWLRSVDGSGALLDLYPESAAWERKFGHDPDPSP------GQPTGQVPLRRH 173 Query: 173 ---------RWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAG 223 + +P + ++ARE++ + A ++ LL G Sbjct: 174 HAVVHWYADQLGVPVPVDGDRRLWQRAREQFTELCTAW-----EDPVDATRGLVGVLLQG 228 Query: 224 FCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGV 283 +LAD S + V + L + Sbjct: 229 AVTLADHSAS-------------------------------AHVALQTHLPLPPNYLAAL 257 Query: 284 HALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWK-LIDQQIADSVIF 342 YQP Q G ++ APTGSGKTE+ L +A + L V++ Sbjct: 258 A------YQPYPHQRKAAETD---GHMILIAPTGSGKTESGLGWAARQLPTMSGQPRVVW 308 Query: 343 ALPTQATANAMLTRMEASA--SHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAW 400 LP +A+ +A + R + + ++ + HG + + L +++ + A Sbjct: 309 VLPYRASIDAAVNRFRQDLPPAGADAEADIGVLHGTAALSVLADAVR-----DDCGPTAV 363 Query: 401 VQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTY 460 ++F + V + Q+L+ + L S++++DE+HAYD Sbjct: 364 DARQASSRAGAMRLFAQRFRVASAYQLLVGAIAGPRYASVLLEQANSLMVLDELHAYDPQ 423 Query: 461 MNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVN 520 G L A ++ ++G V ++SATL P+I Sbjct: 424 TFGRLCACMRLWEELGTRVAVVSATLAP-----------------------PMITLIRET 460 Query: 521 GAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVA 580 L P+ P + + L LE + + G V L+ N VD A Sbjct: 461 LRSPVALHRAPDGTAPD---RHRLVLDEQPLTAPASLEVVRSWLADGYSVLLVANTVDTA 517 Query: 581 QVCYQRL-------KELNNTQVDIDLFHARFTLNDRREKENRVISNFG---KNGKRNVGR 630 Q Y L + L H+RF DR E R+++ G G Sbjct: 518 QALYTELAPTARAVADEAGRDTAALLLHSRFRARDRAVIERRLLARHGERQPGQPARRGG 577 Query: 631 ILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDG 690 ++VATQ VE SL +DFD ++ P + + QR GR++R R + +P Sbjct: 578 LVVATQAVEVSLRLDFDRGASELAPIEAVAQRAGRVNRLGRHPQGP----------VPYR 627 Query: 691 EGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGM 750 G H Y + + G + A WL+ Y + +W Sbjct: 628 VHRGESSHPYQPEA-LDAAWSALTAAPG-PVMSEQAIDHWLNLAY------QTDW----G 675 Query: 751 DKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLD 810 +++ R + + E L R+ ++ +L +L Sbjct: 676 RQWDEEARRSRDAFANTFLTFT--TPFTDREEFLDGLRESFDTVEILLATDEPEYARLTG 733 Query: 811 GQ 812 G+ Sbjct: 734 GR 735 >UniRef50_B9MPU0 CRISPR-associated helicase Cas3 n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MPU0_ANATD Length = 807 Score = 259 bits (661), Expect = 4e-67, Method: Composition-based stats. Identities = 143/903 (15%), Positives = 281/903 (31%), Gaps = 159/903 (17%) Query: 26 LLIYHCLDV---AAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIR 82 LL H L+V A A+ ++ + HD GKF Sbjct: 12 LLYDHLLEVYHYAMEANVELKSW--------------EKEALQIICL---CHDFGKFTTF 54 Query: 83 FQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAA 142 FQ S + HG + + ++ L A Sbjct: 55 FQSHL-----------------SGVSSKHSQHGFLSAIFGVFCWMQKKGLC-LQKMNSPA 96 Query: 143 PHPYESWFPWVEAVTGHHG--------FILHSQDQDKSRWEMPASLASYAAQDKQAR--- 191 + HHG K+ + + Q + R Sbjct: 97 SLDEVISLLIYACILHHHGDAKDISKNLPEKFAGDFKADINLVQKIDDAYVQIEDLRCNA 156 Query: 192 EEWISVLEAL--------FLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFN 243 E+ +LE + FL I DI + G ++G F Sbjct: 157 EDIKPLLEKIGLGNKFEKFLAQQRGFIEDILRYLKKIEYGIR----FIG----LIPQAFK 208 Query: 244 EDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQ-------L 296 + + Y D L + + D +P Q Sbjct: 209 DGTELYFVQQKLYSLLIWADKMSAANYKVLSPCYASLDRLIVARDKVIKPTQDKNLHRIR 268 Query: 297 QVLVDAL------PVAPGLTVIEAPTGSGKTETALAYAWKLID-QQIADSVIFALPTQAT 349 Q + +A+ + I PTG+GKT + A KL + + + +I+ALP + Sbjct: 269 QSVFEAVLSNIEKNKEKDIFSITTPTGTGKTLAGVFAAVKLKEILKKSGRIIYALPFTSI 328 Query: 350 ANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQ 409 + ++ + G +R +L + + +G+E A + ++ Sbjct: 329 IDQNYDVVKNLFETI-------EDFGKNRDRYLLKHHHLTDVEFRGKEGALKEITDEITV 381 Query: 410 SNK-------KVFLGQIGVCTIDQVLISVLPVKHRFIRGL-GIGRSVLIVDEVHAYDTYM 461 K + + V T Q+L +++ ++R ++ SVL++DE+ A D + Sbjct: 382 FEKVASECFIENWTSGFVVTTFVQLLETLISNRNRMLKKFHAFYDSVLLLDEIQAIDVEL 441 Query: 462 NGLLEAVLKAQADV-GGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVN 520 L+E VL+ + +IL++AT P+ + A L + + Sbjct: 442 LPLVEEVLRKLTQLFRCKIILMTATKPLIFED-----------------ACELAGFCDYS 484 Query: 521 GAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVA 580 R L+ H L + D+ D ++ N ++ + Sbjct: 485 IFNRTKLMYHHSDLKVAEFVD---FFSEDIYEDE-------------KSFLIVANTINQS 528 Query: 581 QVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQ 640 Y +K N ++ A DR++ ++ K I+V+TQV+E Sbjct: 529 HQIYNGIKN-NLKNKEVIYLSASLVPKDRKDIIKKIEKMLESGAKP----IVVSTQVIEA 583 Query: 641 SLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIY 700 +D+DFD +I P D + Q GR +RH+ K + V + + D G + +Y Sbjct: 584 GVDIDFDCVIRDIAPIDSIIQCAGRCNRHNEKSQGN-----VLVVNMKDESGITFAKRVY 638 Query: 701 SNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEK 760 N + ++ + + Y +D+ + M + ++F A Sbjct: 639 GNTAI-EISRGLLLKHPEVE---EKDYGMLIDNYFR---MIKENKSFKKSEEFLKAIRLL 691 Query: 761 RFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHE 820 +F + + L R G +S+ + + + + Sbjct: 692 KFDSILEKEELTISRFS------LIQQRGGYVSVIIRNNQEIEDTYEKYINSF--SIKDY 743 Query: 821 QQYEALALNRVNVPFTWKRS----FSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGD 876 + + L N+ F + S ++++ DE+ + + Y + Sbjct: 744 YKRREIYLELKNILFEYTISVPVKYAQIFDEEKGIL--SLPPTSCERYYSPETGFVYDPN 801 Query: 877 EGM 879 + + Sbjct: 802 DNV 804 >UniRef50_Q182D7 Probable ATP-dependent helicase n=11 Tax=Clostridium difficile RepID=Q182D7_CLOD6 Length = 805 Score = 258 bits (660), Expect = 5e-67, Method: Composition-based stats. Identities = 130/759 (17%), Positives = 267/759 (35%), Gaps = 102/759 (13%) Query: 71 IALHDIGKFDIRFQYKSAE----SWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDS 126 ALHD+GK + Q K S+ L + + H + Sbjct: 60 CALHDLGKINSIMQQKMEINNKISYSCSEEERKKLESDKKSLKKIARHNIFSGAF----- 114 Query: 127 LSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAA- 185 L D + + + + HHG S+ + Sbjct: 115 -----LKDILEKMNLSEEDKLYIYKSIML---HHGNYEDYMRLSISKVQEEIYEYIEKGI 166 Query: 186 --QDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLA-GFCSLADW----LGSWTTTN 238 +++ ++ S + ++ + + D L+ +D+ + + N Sbjct: 167 LEKEEFNLKDIESYINSILNVDFKFGEDVLDYDYIDKLSESMFIDSDYNNGQI-DDSVLN 225 Query: 239 TFLFNEDAPSDINALRTYFQDRQQDASR-----VLELSGLVSNKRCYEGVHALLDNGYQP 293 F + L + +Q + E + Y+ L N + Sbjct: 226 YRKFKYILYKGMLNLIDHSASSRQKGIKFYNDFTDEEIDNMILNEIYKSQGNLEKNNIEF 285 Query: 294 RQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAM 353 +Q + L LTV A TGSGKT +K F +P + +A + Sbjct: 286 NTIQKRLRELSGRNVLTV--AFTGSGKTAADYRKTFK--------RKFFLVPNKISAESF 335 Query: 354 LT----RMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQ 409 + + S+ + L HG+ + E E +V + + Sbjct: 336 YRKNIFQNKNDLDTRSSNDYIGLLHGDINLY---------SENEDNGEHDFVLTLRDIDL 386 Query: 410 SNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVL 469 S F + T+DQ+L+S+ + + + VDEVH + M +L + Sbjct: 387 SIN--FCKPCVIATVDQLLLSMFKFPGYEKIFAAVKNASITVDEVHLLEPKMFLILIYFM 444 Query: 470 KA-QADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLL 528 + + L++ATLP K+++++ + + N + + + Sbjct: 445 QFACKYLDVDFHLMTATLPKSYKEQMINKGIIFQEESNENV---------TDKGEIVFIE 495 Query: 529 AHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLK 588 ++ E+ I + + + + A ++ +I N +D Y+ LK Sbjct: 496 SNKEE-----EICEGKDVKVSFIKEKEIKSIVEDALENKQKILIIKNTIDSVNRTYEFLK 550 Query: 589 ELNNTQ---VDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVD 645 E + + VDID+ H+RF D++EK +++++ G I ++TQ VE SLD+D Sbjct: 551 ENLSDKYGGVDIDVLHSRFKFKDKKEKYSKILN--------GEGDIWISTQSVEISLDLD 602 Query: 646 FDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRV 705 F+ +I+ D L QR+GR +R+++ + +P + IY N ++ Sbjct: 603 FNIIISDLATMDSLIQRMGRCNRNNKYEYGNFYILP-------------SEDKIYDN-KL 648 Query: 706 MWRTQQHIEE-LNGASLFFPDAYRQWLDSIYDDAEMD---EPEWVGNGMDKFESAECEKR 761 T+ +++ L S+F + LD YD++ + E ++ + K Sbjct: 649 KNTTKNILKDILKTNSIFTMGIRKTILDDYYDNSVVKKYFEENFISCDKEIKNIYGINKE 708 Query: 762 FKA--RKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLP 798 + + ++ D+ + + RD ++S ++ Sbjct: 709 IFDGLDLIFNFEPYKNIVDSKKEAAKIFRDVDVSYKIIL 747 >UniRef50_A7HLK7 CRISPR-associated helicase Cas3 n=5 Tax=Bacteria RepID=A7HLK7_FERNB Length = 800 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 128/783 (16%), Positives = 256/783 (32%), Gaps = 159/783 (20%) Query: 55 NEMLSKQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNH 114 E ++ +K HD GKF FQ + + + H Sbjct: 39 QEKINDGDLKKCFKIIAYTHDFGKFTTYFQK----------------YLETKKEGKYAKH 82 Query: 115 GAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHG--------FILHS 166 G + SL E F + V HHG + + Sbjct: 83 GFISALFAAFCSLKEFGTESFLPLISYS------------VVLHHHGDLENVDNHLPIST 130 Query: 167 QDQDKSRWEMPASLASYAAQDKQARE---------------------------------- 192 + S +++ + + Q + Sbjct: 131 RGIMNSDYKLADKIEIFEVQRNDIIKNKDSIIEEYKTIDEQEEYKINFVEYIQKFLECDI 190 Query: 193 -EWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDIN 251 E + +L+ + + +D+ L + S AD L Sbjct: 191 VEVLKMLKQIKIKLEKEKSDDVFFIHQLLYSALIS-AD----------KLSASGTIIPNE 239 Query: 252 ALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTV 311 A ++ + + ++ G++ + + ++ ++Q ++ + Sbjct: 240 AFASFAELNRGREV-------MIKTAINNLGINEIRNEIFE--RIQKNLEKYYNKSRIFT 290 Query: 312 IEAPTGSGKTETALAYAWKLIDQ-QIADSVIFALPTQATANAMLTRMEASASHLF----- 365 I APTG+GKT A KL + ++++LP + + + L Sbjct: 291 ITAPTGTGKTFAGFFAAVKLRELLGGNRRIVYSLPFTSIIDQNYETIYQIHKVLKNFERE 350 Query: 366 SSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTID 425 SS +I H + ++ K + E+ + W I V T Sbjct: 351 SSKYIIKHHSLVKPEYIENEYKYDLL------ESELLIENW---------SSGIIVTTFV 395 Query: 426 QVLISVLPVKHRFIRGL-GIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADV-GGSVILLS 483 Q+ +++ ++R ++ L I S++I+DE+ A D + L+E VL+ ++ +IL++ Sbjct: 396 QLFETLISTRNRMLKKLINIKGSIIILDEIQAIDISLLPLIEYVLEKATELYDLRIILMT 455 Query: 484 ATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPE 543 AT P K L + ++NN Y F + LP S + E Sbjct: 456 ATKPYIFKDSL--------ELLDNNEKY-------------FSIFNRTTLLPNLSSRKLE 494 Query: 544 PICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHAR 603 + + ++CN ++ + Y+ LK +N + Sbjct: 495 DFI------------KELKENLQDKSYLIVCNTINSSLEVYENLKGINR---PVFYLSTN 539 Query: 604 FTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRL 663 R EK ++ K K ILV+TQVVE +D+DFD +I P D + Q Sbjct: 540 LLPIHRLEKIKKIKELLSKGEK----IILVSTQVVEAGVDIDFDVVIRDIGPLDSIIQCA 595 Query: 664 GRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFF 723 GR +R++ K + + + YG +IY + + T++ +++ S Sbjct: 596 GRCNRNNLKENGTVYVYSLIPNESNNDLTYGYGRYIYG-LTTLQETKKILQKSEKYS--- 651 Query: 724 PDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETI 783 Y + + + + + + K K+ + + ++S+ +N Sbjct: 652 EKDYFCLISEYFKSIQENLSKKRSENLIKSIKTLNFSEDKSENITPIS-DFSIIENKPNF 710 Query: 784 LAV 786 + V Sbjct: 711 VDV 713 >UniRef50_Q57828 Uncharacterized protein MJ0383 n=2 Tax=Euryarchaeota RepID=Y383_METJA Length = 614 Score = 254 bits (649), Expect = 9e-66, Method: Composition-based stats. Identities = 110/489 (22%), Positives = 179/489 (36%), Gaps = 99/489 (20%) Query: 284 HALLDNGYQPRQLQVLVDALPVA----PGLTVIEAPTGSGKTETALAYAWKLI--DQQIA 337 ++P Q+ G VIE PT GKTE A+ + Sbjct: 6 FFKQITDHEPYDYQIRAWEKINKIMELGGRVVIEIPTAGGKTEAAIIPYLYQFISNDWKV 65 Query: 338 DSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQE 397 +I+ LPT++ + R+ + I + + L + I E G E Sbjct: 66 PRLIYVLPTRSLVEKQVERIRNYIKKILE----IKGYSKDKVEELAKKIVQ---VEYGLE 118 Query: 398 EAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVK----HRFIRGLGIGRSVLIVDE 453 E FLG + + T D L + + I +S+++ DE Sbjct: 119 ET-------------HAFLGFVVLTTWDTFLYGLAAHRTVGDRFTFPCGAIAQSLVVFDE 165 Query: 454 VHAYDT---YMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSA 510 + Y YM L+ V+K + ++ ++ATLP + K+ L Sbjct: 166 IQMYQDESLYMPRLIGLVVKRLVEANVPLVFMTATLPTELKKIL---------------- 209 Query: 511 YPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQV 570 G++ + + + P R + E + L D + + A N G +V Sbjct: 210 -------GIHDEEPITVNPEDTKKPERGEVVVE---FKEKLSDEELSNEIKKAINEGKKV 259 Query: 571 CLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGR 630 +I N V+ A Y+++K+L N+ L H+RFT+ DR EKE + + Sbjct: 260 LIIKNTVNSAIEVYEKVKQLGNS----LLLHSRFTVEDRAEKEKDI----------DKAE 305 Query: 631 ILVATQVVEQSLDV-DFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVA------ 683 I+VATQVVE LD+ + +IT P D L QR+GR R + +P Sbjct: 306 IIVATQVVEAGLDLTNVGLVITDLAPLDALIQRIGRCARRKGERGKVIVVLPNFNEKINE 365 Query: 684 -----TIL----LPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDA-------- 726 IL +P Y + RV+ T + IEE G S P Sbjct: 366 DHREKVILGFKNIPFENAYVTLVNNKDYGRVIELTIETIEEKKGKSKIVPKKFYIGDLGN 425 Query: 727 --YRQWLDS 733 R+ +++ Sbjct: 426 KTIRKLIEN 434 >UniRef50_A5D0R9 Predicted helicases n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D0R9_PELTS Length = 738 Score = 254 bits (648), Expect = 1e-65, Method: Composition-based stats. Identities = 150/774 (19%), Positives = 243/774 (31%), Gaps = 133/774 (17%) Query: 25 HLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIAL-HDIGKFDIRF 83 HLL H + A +A + + + +F +L + L HD+GK F Sbjct: 18 HLLDEHLISAAEMASRF--TAPFYRGSFT------------FLGWMAGLLHDLGKCHPGF 63 Query: 84 QYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAP 143 Q K H G L +Q Sbjct: 64 QEYLKVV-------------DQGGRGEKVPHSPWGAALAGCLQLPQQLRCLLGL------ 104 Query: 144 HPYESWFPWVEAVTGHH-GFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALF 202 + GHH G K + + Q+ + Sbjct: 105 -----------IIYGHHSGLTEPGDYSSKISTYTSKEMLTRMHLFLQSLYNECLLQVPRA 153 Query: 203 LTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQ 262 + L + + + AD L T + + +L + +Q Sbjct: 154 ASWPDLDAIQLEMLGRMVFSALL-DADRL--DTEAHFYPEKRRLREKHPSLEELAERLKQ 210 Query: 263 DASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTE 322 D +LE + R V+ + Y+ + A PG + PTG GKT Sbjct: 211 DQKLLLEKAA-----RNPTVVNRVRKEVYE-----ACLAAASKKPGFYRLTVPTGGGKTR 260 Query: 323 TALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHL 382 ++LAYA +IF LP +++ + + S ++ H + Sbjct: 261 SSLAYALGHAIFHKKRRIIFVLPY----TSIIDQNARVYREILGSEAVLEYHSQT----- 311 Query: 383 FQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRG- 441 A+ G EEA L + + L + V T Q+L S+ K R Sbjct: 312 -------AVPAVGDEEADDPQLLRLQLAEENWDLP-VIVTTTVQLLESLFSNKPSRCRKI 363 Query: 442 LGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQ-ADVGGSVILLSATLPMKQKQKLLDTYGL 500 I SVLI DE + VLK + G +V+L +AT P + L D G+ Sbjct: 364 HRIADSVLIFDEAQTLPPLLLKPTLDVLKDLVENYGTTVVLSTATQPAFNSEFLPDVQGM 423 Query: 501 HTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERM 560 + + + F+LL E +LP LE + Sbjct: 424 EFTEIVP------------DYQKHFELLKRVEYC---------------LLPGQVSLEYL 456 Query: 561 IAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNF 620 QV +I N A L + RR + V Sbjct: 457 AEELAGHEQVLVIMNTRKEAIRLVDELVRRGR---ECFHLSTLLCGAHRRVILDEVRRRL 513 Query: 621 --GKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGF 678 K +LV+TQVVE +D+DF + P D + Q GR +R R Sbjct: 514 DLNKRPGPKSPLLLVSTQVVEAGVDLDFPLVYRAVGPLDRIVQAAGRCNREGRAKSG--- 570 Query: 679 EIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGA-SLFFPDAYRQWLDSIYDD 737 + IL + G ++ + RV+ + E GA +L +PD ++++ ++ Sbjct: 571 -LVKLFILEGEKAPSGPYKAWFELARVI------LSERGGAGALNYPDIFKEYFSRLF-- 621 Query: 738 AEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGE 791 +G +DK E V AE Y L ++D T+ + + GE Sbjct: 622 ------NLLGGNLDKHGVQELRAELNYPAV---AEHYRLIESD-TVPVLVKYGE 665 >UniRef50_Q1Q4B7 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q4B7_9BACT Length = 808 Score = 252 bits (643), Expect = 5e-65, Method: Composition-based stats. Identities = 101/493 (20%), Positives = 180/493 (36%), Gaps = 63/493 (12%) Query: 288 DNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALA---YAWKLIDQQIADSVIFAL 344 + G P Q V + + APTGSGKT A+ +A K D +I+ L Sbjct: 11 NKGLAPYPYQEEVAQRLLDGRNIFLRAPTGSGKTWAAILPYLWAKKQGT-TFVDRLIYVL 69 Query: 345 PTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCC 404 P + A + A F + +G++ V Sbjct: 70 PLRTLATTLYAETVACCKSGF-------------------RVVCDPNARRGEKGELVITI 110 Query: 405 QWLSQSNKKVFLGQIGVCTIDQVLISVL------PVKHRFIRGLGIGRSVLIVDEVHAYD 458 Q Q + F G + T+DQ L S L P + I + S+++ DE H Sbjct: 111 QTGEQKDDPFFEGDVIFTTVDQCLSSYLNCPVSLPQRVGNINAGALLGSLIVFDEFHLL- 169 Query: 459 TYMNGLLEAVLKAQADVG--GSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINW 516 + + ++ + ++++ATL K L + G + Sbjct: 170 -ESDKAMRTAVEMLDRLKPFSQFVIMTATLTTKSLDLLKEILGGQ--------------F 214 Query: 517 RGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNL 576 + + L +H E+ I P+ + D+L + G + +I N Sbjct: 215 VSLTPDEVMSLPSHKEKKRAYRWIN-RPLTINDILD-----------HHNGNRSIIILNS 262 Query: 577 VDVAQVCYQRL-KELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVAT 635 V AQ Y+ + K L + + L H+RF DR++ E+++ FGK + ILV T Sbjct: 263 VTRAQNIYEEMAKRLEGSNTTVFLLHSRFYSEDRKKVEDKLKGWFGKEATK-TNVILVTT 321 Query: 636 QVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGR 695 QVVE +D+ D L T+ P + + QR GR R+ I +G Sbjct: 322 QVVEAGIDISADNLHTEIAPLNSIIQRAGRCARYEGVRGIGTVWIYELLTNEKGLPDFGP 381 Query: 696 HEHIYSNVRVMWRTQQHIEEL-NGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFE 754 + + ++ T++ +E L + ++ ++ + LD ++ + E E + Sbjct: 382 YRE-NDHKALISGTREVLERLPSDGAILDFNSELERLDKVHSNIEERHLESYRQNQYSLK 440 Query: 755 SAECEKRFKARKV 767 + E +V Sbjct: 441 TKIHEAMDGRNEV 453 >UniRef50_B5YKZ7 CRISPR-associated helicase Cas3 n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKZ7_THEYD Length = 543 Score = 251 bits (641), Expect = 7e-65, Method: Composition-based stats. Identities = 110/587 (18%), Positives = 218/587 (37%), Gaps = 110/587 (18%) Query: 292 QPRQLQVLV-DALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQ---IADSVIFALPTQ 347 P + QV V D + +I+APTGSGKTE LA IA +I+ LP + Sbjct: 15 SPYEYQVKVWDGIYSLKYPLLIKAPTGSGKTEAVLAPFLSQFINNSFSIAPRLIYLLPMR 74 Query: 348 ATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWL 407 N + R++ + ++ + HG+ Sbjct: 75 VLVNNVAQRIKKYCEKVSPYISVEIQHGD------------------------------- 103 Query: 408 SQSNKKVFLGQIGVCTIDQVLISVLP-----VKHRFIRGLGIGRSVLIVDEVHAY-DTYM 461 + F+ I V T+DQ L +H + I S+++ DE H Y D + Sbjct: 104 -LPSAPFFIADIIVTTLDQFLYGFARASKQVGRHIDVPAGAIASSMVVFDEAHMYRDEFT 162 Query: 462 NGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNG 521 + A+++ ++++AT+P + L + + ++ Sbjct: 163 FSITRALMEILYKSNIPFVVMTATMPESLDKNLFENISMDSERRIFGD------------ 210 Query: 522 AQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQ 581 DL +H E +I+ EP+ + ++ + + ++ + ++ N V AQ Sbjct: 211 ---IDLKSHLE-----ITIKEEPLIKNN---EVNISDEILEEI-KHKKTLIVLNQVGRAQ 258 Query: 582 VCYQRLK-ELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNG-----KRNVGRILVAT 635 Y+ +K L+ I L H+RFT +DR E +S + I+V+T Sbjct: 259 RVYEEIKNRLDLNNGKIVLLHSRFTKSDRERHEKEAVSIIPHKEDGMIIRPEKRGIVVST 318 Query: 636 QVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGR 695 QV+E +D + L+T+ PAD L QR GR R+ G + + D +G Sbjct: 319 QVLEAGIDFSSELLLTELAPADCLVQRAGRCARYE------GENGKMIIFPVEDDKG--- 369 Query: 696 HEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFES 755 H+ + + + ++ ++S+++ + ++ + + +++ Sbjct: 370 --HLPYKKEHLEKALEWLK----------------INSVFNIKDFNQVCFFADQTLDYQA 411 Query: 756 AECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYE 815 + E AR L E L +++ R+G+ ++ + G++ D Sbjct: 412 NDYE----ARDTLIDLYECVLYADEKPENIQLREGKPITLVIIDLSIGEGRKKED----- 462 Query: 816 DLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGW 862 + + Q + N ++V +K + + D L W Sbjct: 463 RIRNVLQKTNIRANSISV--DFKVGWKLLKDGILKYRLTFDAEKGLW 507 >UniRef50_Q1CW46 CRISPR-associated helicase Cas3 n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1CW46_MYXXD Length = 746 Score = 251 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 157/821 (19%), Positives = 248/821 (30%), Gaps = 147/821 (17%) Query: 12 GKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFI 71 KS+ + + L+ H V + A + + + R++ +L Sbjct: 6 AKSTATPDRPEGEATLLGHTALVLSAARRLLEHRGRASLLAAGLDPALEPRLRRIVLLAA 65 Query: 72 ALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQS 131 ALHD+GK FQ S+ + + H A L+ Sbjct: 66 ALHDLGKCSEHFQ---------------SMLRRQREAPQLVRHEALSLWLCWP------- 103 Query: 132 LGDFFSFFDAAPHPYESWFPWVEAVTGHHGFI-----LHSQDQDKSRWEMPASLASYAAQ 186 G S + + V HH E+ +A Sbjct: 104 -GQPLSAWLQRDVSELDLCLALVCVAAHHRKFQTEAFAPDGTGAGLSLELRVQHEDFART 162 Query: 187 DKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTF-LFNED 245 + EE LF P L D L SW + Sbjct: 163 LGRIAEELALSAPPLFTAPIVLRATRKEHPR-----------DQLQSWQDDFERTVPAGS 211 Query: 246 APSDINALRTYFQDRQQDASRVLELSGL--------VSNKRCYEGVHALLDN---GYQPR 294 + + A+ A L SG ++ E + A+++ G+ PR Sbjct: 212 VDARLLAVCKALVLAADVAGSALPRSGEKQDWVDRQLTAPHPAEALRAVVERRLAGHTPR 271 Query: 295 QLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAML 354 Q V LT++ A GSGKT A +A + Q + PT TA Sbjct: 272 PFQEEVARSAA--PLTLVRAGCGSGKTAAAYLWAAR---QHPGRPLWLTYPTMGTAT--- 323 Query: 355 TRMEASASHLFSSP-NLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKK 413 E +L + L H + + ++ A + + Sbjct: 324 ---EGFRDYLHGADVEARLQHSRAEVDFDIFGLRDGAAPGTSSRDQD-------RLDALR 373 Query: 414 VFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQA 473 + CT D VL V + G+ + ++ DEVHAYD + G L L+A Sbjct: 374 SWGADAMSCTADTVLGLVQSQRQGLYAWPGLCAACVVFDEVHAYDDRLFGCLLRFLEALP 433 Query: 474 DVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQ 533 G +L++A+LP + L ++ R + + + Sbjct: 434 --GIPALLMTASLPATRLDVL-------------RGMCERVHGRSLAEVEGPE------- 471 Query: 534 LPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNT 593 E + L + +V + N VD + + Sbjct: 472 -------DLETLPRYQRLDVAEPWALVAECLRDHGKVLWVSNTVDRCMRTAEA---GTSH 521 Query: 594 QVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQH 653 L+H+RF DR + VI F G+ TQV E SLD+ D L+T Sbjct: 522 GARALLYHSRFRYEDRVRRHGDVIEAFATEGRAAFAS---TTQVAEMSLDLSADLLVTDL 578 Query: 654 CPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHI 713 P L QRLGRL+R RPA +L DG Y + + + + Sbjct: 579 APIPALIQRLGRLNRRSTLERPAPVRP--FVVLPFDGPPYAAPD--------LRDARAWM 628 Query: 714 EELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEE 773 E L L R +D+ P + + + S + RF Sbjct: 629 ERLGTGPLS----QRDLVDA-------WGPPGMMDAPRRQSSTWLDGRF----------- 666 Query: 774 YSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVY 814 +T A RDG SL +L + +LDG V Sbjct: 667 -------DTWPAPCRDGSPSLTVLL---EEDARAVLDGAVS 697 >UniRef50_A4XFN3 CRISPR-associated helicase Cas3 n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XFN3_CALS8 Length = 714 Score = 250 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 102/592 (17%), Positives = 207/592 (34%), Gaps = 85/592 (14%) Query: 302 ALPVAPGLTVIEAPTGSGKTETALAYAWKLID-QQIADSVIFALPTQATANAMLTRMEAS 360 + I PTG+GKT + A KL + + + +I+ALP + + +E Sbjct: 187 EKNKEKDIFSITTPTGTGKTLAGVFAALKLKEILKKSGRIIYALPFTSIIDQNYHVVENL 246 Query: 361 ASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNK-------K 413 + +R +L + + +G+E A + ++ K + Sbjct: 247 FEAIEDFE-------KNRDRYLLKHHHLTDVEFKGKEGALKEITDEITVFEKVASECFIE 299 Query: 414 VFLGQIGVCTIDQVLISVLPVKHRFIRGLG-IGRSVLIVDEVHAYDTYMNGLLEAVLKAQ 472 + V T Q+L +++ ++R ++ SVL++DE+ A D + L+E VL+ Sbjct: 300 NWTSGFVVTTFVQLLETLISNRNRMLKKFHTFYDSVLLLDEIQAIDVELLPLVEEVLRKL 359 Query: 473 ADV-GGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHP 531 + +IL++AT P+ + A L + + R L+ H Sbjct: 360 TQLFRCKIILMTATKPLIFED-----------------ACELAGFCDYSIFNRTKLMYHH 402 Query: 532 EQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELN 591 L + + ++ N ++ + Y +K N Sbjct: 403 SDLKVAEFVDF----------------FLQEVYEDEKSFLIVANTINQSHQIYNGIKN-N 445 Query: 592 NTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLIT 651 ++ A DR++ ++ K I+V+TQV+E +D+DFD ++ Sbjct: 446 LKNKEVIYLSASLVPKDRKDIIKKIEKMLESGAKP----IVVSTQVIEAGVDIDFDCVVR 501 Query: 652 QHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQ 711 P D + Q GR +RH+ K + + V + + D G + +Y N + ++ Sbjct: 502 DIAPIDSIIQCAGRCNRHNEKSQGS-----VLVVNMKDESGITFAKRVYGNTAI-EISRG 555 Query: 712 HIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWA 771 + + Y +D+ + M + ++F A +F + + Sbjct: 556 LLLKHLEVE---EKDYGMLIDNYFR---MIKENKSFKKSEEFLKAIRLLKFDSILEKEEL 609 Query: 772 EEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALN-- 829 L R G +S+ + + Q +E++ L L Sbjct: 610 TISRFS------LIQQRGGYVSVIIRSNEEIEDAYQRYIDSFSIKDYYERREIYLKLKNI 663 Query: 830 ----RVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDE 877 ++VP + + F E E G+L L + Y ++ Sbjct: 664 LFEYTISVPIKYAQIFDE---EKGILSL---PPTSCQRYYSPKTGFVYDPND 709 >UniRef50_O30165 ATP-dependent RNA helicase, putative n=2 Tax=Euryarchaeota RepID=O30165_ARCFU Length = 759 Score = 249 bits (635), Expect = 4e-64, Method: Composition-based stats. Identities = 103/485 (21%), Positives = 180/485 (37%), Gaps = 80/485 (16%) Query: 289 NGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQA 348 G+ P + Q + +I APTG+GKTE +L ++ + +I++LPT+ Sbjct: 10 TGHSPYEYQKEAMDNLLEGKSLIIRAPTGAGKTEASLIPFIYGLNDYLPPQLIYSLPTRT 69 Query: 349 TANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLS 408 ++ R AS F + + HG + LF+ Sbjct: 70 LVESIGERAIKYAS--FKKLRVAIHHGKKATSSLFEE----------------------- 104 Query: 409 QSNKKVFLGQIGVCTIDQVLISVL------PVKHRFIRGLGIGRSVLIVDEVHAYDTYMN 462 I V TIDQ + L P + I GI ++ + DEVH D Sbjct: 105 ---------DIIVTTIDQTAGAYLSVPLSMPKRWGNIFVGGIASALTVFDEVHTLDPEKG 155 Query: 463 GLLEAVLKAQ-ADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNG 521 A + Q A +G I++SATLP +++ + + VE Sbjct: 156 LQTAAAIAMQSAKLGLPSIIMSATLPDVFIERVKERIEKNGGKVEIMD------------ 203 Query: 522 AQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQ 581 + + ++ R + + E I D ++ + ++ A ++ ++ N V+ AQ Sbjct: 204 ------VKNESEIKSRRNRKVELINRPD---EMLTADTVLKEAENCRKLVVVVNTVERAQ 254 Query: 582 VCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQS 641 Y L++ I L H+R+ DR EKE FGKNGK I ++TQV+E Sbjct: 255 NLYLDLRK--KIDYPIFLLHSRYLEKDRAEKEKSFEKVFGKNGKGEC--IFISTQVIEVG 310 Query: 642 LDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYS 701 +D+ ++++ P D L QR GR R E V + Y + Sbjct: 311 MDISSPIILSEVAPIDALIQRAGRCARWG-----GNGEFHVFGLARDSSNPYAPYLK--- 362 Query: 702 NVRVMWRTQQHIEELNGASLFFPDAYRQWLDSI---YDDAEMDEPEWVGNGMDKFESAEC 758 ++ T I L + Q ++++ + + MD + + + Sbjct: 363 --ELIESTITEIRSKGDFPLDWQTEL-QLVNNVLSSHFEFFMDSKFFYQRLGELARAVYE 419 Query: 759 EKRFK 763 + K Sbjct: 420 GSKAK 424 >UniRef50_C6A4J6 Putative uncharacterized protein n=1 Tax=Thermococcus sibiricus MM 739 RepID=C6A4J6_THESM Length = 733 Score = 248 bits (633), Expect = 7e-64, Method: Composition-based stats. Identities = 102/502 (20%), Positives = 194/502 (38%), Gaps = 82/502 (16%) Query: 302 ALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASA 361 + + + APTG GKT +L A + +I+ LPT + M ++ Sbjct: 224 NMANSGENILFSAPTGWGKTFASLTIA----STKTPTHIIYVLPTITSIRKMKETIKKIL 279 Query: 362 SHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGV 421 N+ F ++ + +Q E V ++S + F+ + + Sbjct: 280 KM------------KVEDNYYFADVEK--VAKQKDYERSVDWELFIS----RSFMSPVTL 321 Query: 422 CTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQA---DVGGS 478 T+DQ++++ L V F++ S+ I DE H Y +L ++ D Sbjct: 322 TTLDQIVLTFLHVGKYFLKRFHFRNSIFIFDEFHLYPISGLYILLKFIQKYNQEFDYNIK 381 Query: 479 VILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRF 538 + +SAT+ + L+ +Y ++ + + + Sbjct: 382 TVFMSATVHPAL-ENLVSSY--------------------ISPISFDFTEEYKRKRRYMY 420 Query: 539 SIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDID 598 SI E I +L + IA V +ICN V+ A Y LK + + Sbjct: 421 SINEEDIVSPAILEE-------IAKKAQDGNVLVICNTVEKAIKLYLLLKRHYKIKKTL- 472 Query: 599 LFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADL 658 L H+RFT DR+EKE ++ + G + V+TQV E SLD+ FD+L T+ P Sbjct: 473 LLHSRFTYKDRKEKETQLEWL----SRIPKGFVFVSTQVAEVSLDMSFDYLFTELAPLSS 528 Query: 659 LFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNG 718 L QR GR++R+ F +L E + + Y ++ + + +EE +G Sbjct: 529 LIQRFGRVNRYST------FTNNENVKILKPSELVDKRRYPY-DLDELSLAKTILEEFDG 581 Query: 719 ASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKF-ESAECEKRFKARKVLQWAEEYSLQ 777 + Q+ ++ + + +DK+ + + + R+ +S+ Sbjct: 582 NIKTEFELIEQF-----KESSLKLDKTKLKEIDKYLQKWDNDTRY----------FFSID 626 Query: 778 DNDETILAVTRDGE-MSLPLLP 798 ND+ + + E ++ ++P Sbjct: 627 LNDKELDKILNFRETNTILVIP 648 >UniRef50_D0MJ67 CRISPR-associated helicase Cas3 n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MJ67_RHOM4 Length = 791 Score = 247 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 148/767 (19%), Positives = 252/767 (32%), Gaps = 114/767 (14%) Query: 15 SKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALH 74 +KS +G + L H V A ++ L+ + AW+ H Sbjct: 8 AKSAARGGES--LPAHTRQVVARLRQLRERMPDLEEKLELPGLWDALFAAAWV------H 59 Query: 75 DIGKFDIRFQ------YKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLS 128 D GK FQ K L+ A P+ A + + L+ Sbjct: 60 DFGKAARGFQEMLQSGEKWNYRHEVLSLAFLDWLLPADDPRYPLAVAAVAAHHRDYPVLA 119 Query: 129 EQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDK 188 Q + ++ H + + Sbjct: 120 RQYIEVEDPADSGIDERWQEMDQKRLEALAH------------------WTAEEWPGIVS 161 Query: 189 QAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPS 248 R + + L + + D P LA + ++ P+ Sbjct: 162 AERLNVQAPSLHVLLNDVPVLLGDGPDRIRKALA-------------CYRRYFGSQRQPA 208 Query: 249 DINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQP---------RQLQVL 299 + + RQ R L L + A +G + Q Sbjct: 209 RRERRYAWQRRRQALFVRGLMLQADRLASAQAPPLKAPDLDGVEKALPSDRSYWYPHQQK 268 Query: 300 VDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEA 359 G ++ APTGSGKTE AL +A + + + +V + LP QA+ NAM R Sbjct: 269 ATEHV---GSLLLAAPTGSGKTEAALLWARRQLQEGRRGAVCYLLPYQASLNAMYRRFVD 325 Query: 360 SASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQI 419 + ++ L H + +++ + +TE Q + L ++ + Sbjct: 326 KYG--LNRKDVALLHSRA-VQAVYRELVRGEVTEHAVAYQQAQRFKALG----RLHQQPV 378 Query: 420 GVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQ-ADVGGS 478 + T Q+L + + + + + LIVDE+H Y+ + GLL + Sbjct: 379 LLATPYQLLRAAFRLPGYEGQWAMLQGAHLIVDEIHGYEPFRLGLLLGLFSMLQQHFDVR 438 Query: 479 VILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRF 538 + +++AT+P + L + WR + H Sbjct: 439 LAVMTATMPSWLRGLLEREL--------------KVVWRSADSQLYERFCRH-------- 476 Query: 539 SIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRL---------KE 589 L + +LE ++ + G V ++ NLV AQ + L + Sbjct: 477 ----RLFLKEGKLENERVLEEIVQRVHQGEAVLVVTNLVAAAQQLAEALAVRLNSPWPQR 532 Query: 590 LNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWL 649 + + L H+RFT DR ++E V+ R G ++VATQVVE SLDVDFD + Sbjct: 533 CDPEHDPVLLVHSRFTAEDRLQREA-VLQARVHRQLRQGGFVVVATQVVEVSLDVDFDTI 591 Query: 650 ITQHCPADLLFQRLGRLHRHHR-KYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWR 708 T P + L QR GR++R K RP P Y +M R Sbjct: 592 YTDPAPLEALVQRFGRVNRRRCFKERPVFVMTEAMDWTWP-----------YRQEALMRR 640 Query: 709 TQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFES 755 T +H+ +G + WLD++Y+ + V G +E+ Sbjct: 641 TVEHLTRFDG-QMIDEAMIGVWLDAVYEPEVPSLQQEVARGRSSYET 686 >UniRef50_C1F2C1 CRISPR-associated helicase Cas3 n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F2C1_ACIC5 Length = 771 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 131/741 (17%), Positives = 227/741 (30%), Gaps = 107/741 (14%) Query: 10 YWGKSSKSLTKGNDIH---LLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAW 66 YW S + + + H L H VAA+A ++ + + Sbjct: 3 YWAHSDANRSPDEEGHRWQPLSEHLAQVAALARELAER------------ATAPASALST 50 Query: 67 LLFFIA-LHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQD 125 L + LHD GK+ FQ + H G Sbjct: 51 LAYAAGMLHDYGKYQECFQ------------------RMLHGGSSRCPHAIYGAIALRC- 91 Query: 126 SLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQ----DKSRWEMPASLA 181 D + P V A+ HH + + D A Sbjct: 92 -----------FDEDGCGTDRKWAMPAVCAIAAHHAGLKDFSEHECITDPGNPAFAAERE 140 Query: 182 SYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFL 241 A ++ + A + L + LL+ AD L T + Sbjct: 141 IAQKLLGAAATDFPEIRSAFSREKSRLEQRSVDMQTRMLLS-CLVDADRL--NTAGRLLV 197 Query: 242 FNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVD 301 E + DR DA+R + V N R Q D Sbjct: 198 QQELHSEHRLEQMNIYLDRVADAARKRGTAASVLNVRAQVQ--------------QHCSD 243 Query: 302 ALPVAPGLTVIEAPTGSGKTETALAYAWKLID--QQIADSVIFALPTQATANAMLTRMEA 359 A +PG+ + PTG GKT A+ +A + Q VI +P + ++ + Sbjct: 244 AAKQSPGVFSLCVPTGGGKTLGAMRFALEHAAHSQGKLRRVIVVIPYLS----IIEQNAK 299 Query: 360 SASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQI 419 + +F ++ H + L +S + T EE + + + + Sbjct: 300 IYADVFGPEAVLEHHSGA-VTPLMRSERETTSTTCASEEDEISPSVHPRTIETENWDAPV 358 Query: 420 GVCTIDQVLISVLPVKHRFIRG-LGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQAD-VGG 477 V T + S+ + +R I RSV+I+DEV + L +L+ A+ G Sbjct: 359 IVTTSVRFFESLFSNRPSDLRRIHNIARSVIILDEVQTIPRRLLAPLLGMLRELAEEWGC 418 Query: 478 SVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPR 537 SV+L +AT P + + P + G+ + + P + Sbjct: 419 SVVLSTATQPAFEARN------------------PRQTYLFPFGSIKPII---PGETSAA 457 Query: 538 FSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDI 597 + + + + + D E + QV + NL D A + L+ ++ Sbjct: 458 MARTLQRVQIDWEIEDRIRWEELATRLAEQRQVLCVVNLRDHAATVFDGLRTRLPSEEQT 517 Query: 598 DLFH--ARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCP 655 LFH R R + + G +V+TQ++E +D+ P Sbjct: 518 GLFHLSTRMCAQHRLRVLDEIRHRLGAGLTCR----IVSTQLIEAGVDLSVPIAFRALGP 573 Query: 656 ADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEE 715 D + Q GR+ R AG + P+ E Y + Y + TQ ++E Sbjct: 574 LDSIIQVAGRVDREGTASAAAGAPAGKLIVFRPEDERYPGMD--YKAAAAI--TQGVLDE 629 Query: 716 LNGASLFFPDAYRQWLDSIYD 736 + + Y+ Sbjct: 630 FESLQTDHLRSISDYFQRYYE 650 >UniRef50_A6VNU7 CRISPR-associated helicase Cas3 n=1 Tax=Actinobacillus succinogenes 130Z RepID=A6VNU7_ACTSZ Length = 811 Score = 245 bits (626), Expect = 4e-63, Method: Composition-based stats. Identities = 150/892 (16%), Positives = 262/892 (29%), Gaps = 158/892 (17%) Query: 30 HCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYKSAE 89 H L+ A +A + F LS+ L HD GK+ FQ Sbjct: 22 HLLETAVIA-----------SMFAVKLDLSE--AGELLGLM---HDFGKYSTAFQEYIRA 65 Query: 90 SWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESW 149 + A P +K +H AG W + F + Sbjct: 66 VTGQDPDADNDYVLP---NGKKIDHSTAGAQWVYRRLKK-------FGLQNGIGELVGQI 115 Query: 150 FPWVEAVTGHHG-------------FILHSQDQDKSRWEMPASLASYAAQDKQAREEW-- 194 + HHG D++ + K EE Sbjct: 116 LGL--CIASHHGEGLIDCLNMNGEAVWQKRFDKEDELTHLSECEQRADKAVKIRAEELAG 173 Query: 195 -------ISVLEALFLTPAGLSI--NDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNED 245 + +L A+F P + L AD + S F + Sbjct: 174 ENLVKSLLKLLAAIFKNPDSNDKIKEFYLGCLTRFLFSCLIDADRINSAD------FERE 227 Query: 246 APSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPV 305 D+ L Q A LE R++ Sbjct: 228 EQKDLRRLNQ--SPDWQQAIDKLETH--------LANFEIRYPIDEIRREISSTCLKRAN 277 Query: 306 AP-GLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHL 364 P G+ + PTG GKT +L YA + D +I+ +P +++ + ++ + Sbjct: 278 DPQGIYTLTVPTGGGKTLASLRYALHHAHKHNLDRIIYIIPY----TSIIDQNASAVREI 333 Query: 365 FSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTI 424 ++ H N + W + + + I T+ Sbjct: 334 LGEDWVLEHHSN----------------------LEPEQQNWQDKLLSENWDKPIVFTTM 371 Query: 425 DQVLISVLPVKHRFIRGLG-IGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVG-GSVILL 482 Q L + R +R + + +SVLI DE+ L VL G S +L Sbjct: 372 VQFLDAWFGGGTRGVRHIHPMTKSVLIFDEIQTLPVKCVHLFCNVLNWLTQFGKSSAVLC 431 Query: 483 SATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQP 542 +AT P L + EN+ I + Q FD L+ R I Sbjct: 432 TATQP--LLDNLPKSEFGELKLAENSE----IMGQNKTLNQLFDDLS-------RVEIHY 478 Query: 543 EPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHA 602 +P + ++ + I N AQ YQ + + + Sbjct: 479 KPKAGGWSADEAGAF--LLEQFQTASSCLFIVNTKKWAQELYQYCQRQDVPPEALFHLST 536 Query: 603 RFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQR 662 R+ + + K I ++TQ++E +D+ +I D + Q Sbjct: 537 NQCSVHRKAIFDEIKGRL----KNKQPVICISTQLIEAGVDISMSCVIRALGGLDSIAQA 592 Query: 663 LGRLHRHHRKYRPA-----GFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELN 717 GR +RH K + P +LPD + ++ + E Sbjct: 593 AGRCNRHGEKVGKGQVYVLNLQEPNLARVLPDIDQGQ------------QNAERVLREFA 640 Query: 718 GASLFFPDAYRQWLDSIYDDAEMDEP------------EWVGNGMDKFESAECEKRFKAR 765 + P A RQ+ + + + D +W+ + +A+ +KR + + Sbjct: 641 EQDILQPAAMRQYFEYYFYNRSNDMSYTVKGSTSGSLLDWLSDNRLNVYAAKNDKR-RPK 699 Query: 766 KVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEA 825 L S + I A TR ++PY + L G V+ + Sbjct: 700 LPLLMQSFKSAGRAFQAIDAPTR-----AVIVPYSKGKDLIAELCG-VWNPKEMYRILSK 753 Query: 826 LALNRVNV-PFTWKR-----SFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVI 871 + VNV P W++ + EV G+ +L+ + D + + + Sbjct: 754 VQRYSVNVFPNVWEKLEKEQAVQEVQAGLGIYYLKERYYSDEYGLSVDEVGA 805 >UniRef50_B4VUE8 CRISPR-associated helicase Cas3 domain protein n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VUE8_9CYAN Length = 783 Score = 245 bits (626), Expect = 4e-63, Method: Composition-based stats. Identities = 141/743 (18%), Positives = 239/743 (32%), Gaps = 127/743 (17%) Query: 38 ADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFF---IALHDIGKFDIRFQYKSAESWLKL 94 A+ L + L + V + LHD GK + FQ + + Sbjct: 37 AEVLLK---CLDRRIFQQLGLDESEVDLFANTVRLGAYLHDWGKANQHFQEMVYLNTAQK 93 Query: 95 NPATPSLNG-PSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWV 153 +P + + + +HG + + + +F + + + W Sbjct: 94 SPDPKKRDKLKQLRQLWEKHHGKQMIRHEVLSGILALRVPEFRHWLEQCANADLVIAVWA 153 Query: 154 EAVTGHH---------------G---FILHSQDQDKSRWEMPASLASYAAQDKQAREEWI 195 GHH G FI + K +M L A + W Sbjct: 154 AM--GHHLKMTSDLDLTIRSGTGSSLFIYTDHNDFKRMLKMGRQLGLPANLPAVPGKVWQ 211 Query: 196 SVLEAL--------FLTPAGLSINDIPPDCSSLLAGF---CSLADWLGSWTTTNTFLFNE 244 F I++ +A AD GS Sbjct: 212 KEELERELKELYHEFDQIEQQIISENDTRRLRFIAAVKATVIAADLAGSAL--------- 262 Query: 245 DAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALP 304 P ++ + + + + ++ + V G + R Q + A P Sbjct: 263 --PVVDENIKDWIE----------NVLSITLSENDLDQVLQQRLQGKKLRPFQQKIAATP 310 Query: 305 VAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHL 364 +T+++A G+GKT A A+A K + F PT TA + Sbjct: 311 --HRITLVKAGCGTGKTIGAYAWAKKWA---GDRKLFFGYPTTGTATQ------GFIDYA 359 Query: 365 FSSP-NLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCT 423 + L H + + + I ++G ++ W + + VCT Sbjct: 360 HETDIEADLMHSRADLD---REILFSGDEDEGIDDRLAALTAWRQK---------LIVCT 407 Query: 424 IDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLS 483 +D VL + + I + + DEVHAYD + G L + G ++L+S Sbjct: 408 VDTVLGLMQNNRRSLYSWSAIAQGAFVFDEVHAYDNRLFGALLRFIDTFR--GAPILLMS 465 Query: 484 ATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPE 543 A+ +Q Q + G + ++ P+ L Q E Sbjct: 466 ASFTPEQIQAIQGVVG--------------------ELGEATQIIEGPKNLEVLPRYQIE 505 Query: 544 PICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHAR 603 I AD D R +V + N V Q Y K+ + + ++H+R Sbjct: 506 SIPSADQAWDRV---RETLTRQHQNKVLWVTNSVKTCQELYLEAKQQIPDSIPVLIYHSR 562 Query: 604 FTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRL 663 + +R EK VI F G + + TQV E SLD+ D L+T PA L QRL Sbjct: 563 YRYFNRLEKHKWVIDAFEHEG----AVLAITTQVCEMSLDLSADLLVTPIAPASALIQRL 618 Query: 664 GRLHR------HHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRT-----QQH 712 GRL+R +HR +G P D Y + E V Q++ Sbjct: 619 GRLNRRVMTTANHRVKLASGKIAPTLVYPWDDSRPYSQDELETGQHLVDQLAGKAICQEN 678 Query: 713 IEELNGASLFFPDAYR---QWLD 732 + ++ A + P+ +WL+ Sbjct: 679 LAKIV-AQMSTPEQQPSQSEWLE 700 >UniRef50_A3DKC0 CRISPR-associated helicase Cas3 n=2 Tax=Clostridium thermocellum RepID=A3DKC0_CLOTH Length = 800 Score = 245 bits (625), Expect = 6e-63, Method: Composition-based stats. Identities = 142/897 (15%), Positives = 302/897 (33%), Gaps = 150/897 (16%) Query: 26 LLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQY 85 LL+ H +V + DC Q E S+ ++ + HD+GK FQ Sbjct: 9 LLLDHLKNVFLIGDCILMQ------KKTEFESFSEHDIRQLNKLNLLTHDLGKATSYFQD 62 Query: 86 KSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHP 145 L+ + + + HG + ++ + +F Sbjct: 63 YIRN-----------LDDNTQKNDERKRHGLLS-GVLSFKIVNAVMKNEILAFLSYM--- 107 Query: 146 YESWFPWVEAVTGHHGFILHSQD----QDKSRWEMPASLASYAAQDKQAREEWISVLEAL 201 V+ HHG + + + + DK +E I+ L Sbjct: 108 ---------VVSKHHGELDDFTNFISVISGDEKNKTLLKLQFESIDKGKLQEVITRLGID 158 Query: 202 FLTPAGLSINDIPPDCSSL-----------LAGFCS--LADWLGSWTTTNTFL--FNEDA 246 F ++++ D + L G L D+L S + L Sbjct: 159 F-DILSYTVDEFENDIDYITSRKVRKKVKELMGLEIFLLIDYLFSLLIFSDKLEAIYNSE 217 Query: 247 PSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVL---VDAL 303 +I +R + +S ++ + + + ++ R Q + V+ L Sbjct: 218 NMNIEEFIEKNTNRPRISSDCVD------KFKKSLEIKNIRMAEWRNRAYQDVLGSVENL 271 Query: 304 PVAPGLTVIEAPTGSGKTETALAYAWKLIDQ-----QIADSVIFALPTQATANAMLTRME 358 + + I PTGSGKT TAL A +L ++ +I+ LP + + Sbjct: 272 SLEEKILSINLPTGSGKTLTALKAALRLKERLIEEKGYNPRIIYVLPFTSIIEQNFDVFQ 331 Query: 359 ASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQ 418 + N++L H + S + ++G+ E+ +S+ + + + Sbjct: 332 KVLGT--TESNVLLKHH-------YLSQRVYQWEKEGEIESLSDT---VSEHLVESWDSE 379 Query: 419 IGVCTIDQVLISVLPVKHRFIRGL-GIGRSVLIVDEVHAYDTYMNGLL-EAVLKAQADVG 476 I V T Q+L S+ ++R ++ I S++I+DEV + L+ E + Sbjct: 380 IVVSTFVQLLHSIFTNRNRKLKKFHNIVNSIIILDEVQSIPHRYWNLVRETFSAMAKYLN 439 Query: 477 GSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPP 536 I ++AT+P+ ++ + Y L D + + I + L + Sbjct: 440 CHFIFMTATMPLIFSEENKEIYELVKDKRKYFEEFSRITIDAKRLTDKTTLDEY------ 493 Query: 537 RFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVD 596 + + L D+L ++ N + + Y +KE + + Sbjct: 494 ------KTLLLDDILR------------YKKDDFLIVMNTIRTSIEIYSFIKEELKDEAE 535 Query: 597 IDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPA 656 I +R + K + +I+V+TQ++E +D+D D + P Sbjct: 536 IYYLSTNIIPKER-------LDRIKKIKESKNRKIIVSTQMIEAGVDIDIDRVYRDFGPM 588 Query: 657 DLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEEL 716 D + Q GR +R + + + ++ + +IY NV + ++ + L Sbjct: 589 DSINQTAGRCNREWGDKKGL---VTLVNLVNENHHSRPYATYIYDNVLI----EETKKAL 641 Query: 717 NGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSL 776 +G + + Y G+ S E +K K L++ E + Sbjct: 642 SGLEMIEEKEIFHLAEKYYV------------GLKSHGSDESQKLLDCIKELRYREAFEC 689 Query: 777 QDNDET--ILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHE--------QQYEAL 826 +D+ + + R ++ + + + + + Q + + Q + L Sbjct: 690 GKDDKNSGVFELIRQDFNTVDVFIEIDDDATEVWQEYQSIKKIKDRFERKRKFNQFKKDL 749 Query: 827 ALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMTRVI 883 + +++P R ++ ++D + ++ + + TY D G R + Sbjct: 750 YMYVLSLPEFAVRKQVDIDEKD-ITFINREMVFN-----------TYDKDTGFMRDL 794 >UniRef50_C6PCV3 CRISPR-associated helicase Cas3 n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PCV3_CLOTS Length = 803 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 124/591 (20%), Positives = 212/591 (35%), Gaps = 118/591 (19%) Query: 280 YEGVHALLD-NGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQ--I 336 +E V D G++P Q+ + A +++APTGSGKT ++ + Sbjct: 6 FEYVKFFKDVTGFEPYDFQIDLAKKVFAGKNVIMQAPTGSGKTWASIMPFLFAYYEGINF 65 Query: 337 ADSVIFALPTQATANAMLTRMEASASHLF-SSPNLILAHGNSRFNHLFQSIKSRAITEQG 395 +I++LP + N++ + F + + + G + + F Sbjct: 66 PRKLIYSLPLRVLTNSLYNDVREKVDKKFNGNIQVTIQTGENSNDPYF------------ 113 Query: 396 QEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLP------VKHRFIRGLGIGRSVL 449 G I TIDQ L S+L K I I S L Sbjct: 114 -------------------LDGDIIFTTIDQSLSSLLSIPFSLSNKQSNINTGAIISSYL 154 Query: 450 IVDEVHAYDTYMNGLLEAVLKAQADVGG--SVILLSATLPMKQKQKLLDTYGLHTDPVEN 507 I DE H D + L +L + + G +SATL KLLD Y Sbjct: 155 IFDEFHLLDVKRS--LSTLLNIISKLDGITPFCFMSATLSS----KLLDNY--------- 199 Query: 508 NSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAG 567 + +NG+Q ++ E + Q + + + E +I N Sbjct: 200 --------CKKLNGSQ----ISIKESEVAKIKSQRDKVKRVFVKETTISAEEIIK--NHV 245 Query: 568 AQVCLICNLVDVAQVCYQRLKELNNTQ-----VDIDLFHARFTLNDRREKENRVISNFGK 622 + ICN V+ Q + LK + + V + H+RF+ NDR++KE + F K Sbjct: 246 KKTIAICNTVETCQNLFLELKNKIDREKSLNNVRLLCIHSRFSSNDRKDKEELIKKFFNK 305 Query: 623 NGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPV 682 NV IL++TQV+E LD+ D + + P + QR+GR R+ +I V Sbjct: 306 YSDENV--ILISTQVIEVGLDITCDVMHLEISPINSFLQRIGRCARY----EGENGKIFV 359 Query: 683 ATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDE 742 + D ++ + + RT ++ + ++ I D E Sbjct: 360 YDVNKDDKTK----PYLPYDEELCVRTLNKLKSIGNGVNIDYQKSEVLINDILTDKE--- 412 Query: 743 PEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQT 802 + FE E K + +++ + + + RD + ++ +L Sbjct: 413 -------LRDFERIEEGKHTRFTEIVDCW----INNEKGNASRLIRDID-TINVLVVQNV 460 Query: 803 SSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWL 853 S L + Y+A+ +NR + K+ VV ED WL Sbjct: 461 SL------------LKNPYTYDAIPVNRYTLISRLKK----VVKEDEEDWL 495 >UniRef50_C8VZL0 CRISPR-associated helicase Cas3 n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VZL0_DESAS Length = 836 Score = 244 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 147/835 (17%), Positives = 258/835 (30%), Gaps = 140/835 (16%) Query: 10 YWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLF 69 YW + L H VAA+A V F + VK + Sbjct: 3 YWAHYDQEKEIKQT---LKEHLSSVAAMAR----DRVSPGVQFKD---IPSSIVKELAYW 52 Query: 70 FIALHDIGKFDIRFQ------------------------YKSAESWLKLNPATPSLNGPS 105 HD+GK+ FQ + + + Sbjct: 53 MGYFHDLGKYTDYFQDYLTKNKKSKFKEHAHISACCVYSFLLDRVIDFSDDWQKKITAFL 112 Query: 106 TQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILH 165 +C + +HG L S + + + AA + P + Sbjct: 113 IYLCSRKHHGTLSLEGLFSISREK----EIWKLLQAAEYNLLEKLPVI------------ 156 Query: 166 SQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFC 225 QD S L Y + D + + ++ + G + L Sbjct: 157 LQDAGLSDRISGVELKKYLSVDVLIKSKSLARTGQYLNSGRGEDERWFF--LAIYLFSLL 214 Query: 226 SLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHA 285 +D + E + + Y + + L + Sbjct: 215 IDSD----KLDSGGLKPGEVKSCPSDQVSKYLNKKLEQLKDK-RNVSLWERRNNARKTML 269 Query: 286 LLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQ-----QIADSV 340 + G D G I APTG GKT ++L A L ++ + + Sbjct: 270 GIIEGLS--------DEEIKGTGFFTITAPTGIGKTLSSLQCALCLQERIKVLEKYTPRI 321 Query: 341 IFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAW 400 I A+P N ++ + + +F ++ H R SR E ++A Sbjct: 322 IAAIPF---IN-IIEQNKKEYEQVFGKELKLIVHH--RLGDFSVQASSR--EEISVDQAL 373 Query: 401 VQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLG-IGRSVLIVDEVHAYDT 459 ++ W G + + T Q+ S++ +R ++ + S++I+DE A Sbjct: 374 LEVESW---------EGDVILTTFVQLFQSIITGNNRLLKKFNKLACSIVILDEAQAVPE 424 Query: 460 YMNGLLEAVLKAQAD-VGGSVILLSATLPMKQK--QKLLDTYGLHTDPVENNSAYPLINW 516 Y L+ AVL+ + +G IL++AT P + LL + G V PL+ Sbjct: 425 YYMPLIGAVLQKMTEFLGTRFILMTATQPKILEFGNLLLGSSGGKAKAV------PLL-- 476 Query: 517 RGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNL 576 D + E+L + + + L LE + V ++ N Sbjct: 477 --------PDFEGYFEKLTRTKFVS---LLKKNRLDTGAFLELFQEKWDGKKSVLIVVNT 525 Query: 577 VDVAQVCYQRLKELNNTQ---VDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILV 633 + + Y+ +K+L Q + + RRE VI N + ILV Sbjct: 526 IKRSIEVYREIKKLLKDQACNIPVCYLSTNIMPRQRRE----VIKNVKDKLENKETVILV 581 Query: 634 ATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGY 693 +TQ +E +D+DFD P D L Q GR++R RK G +PV + L Y Sbjct: 582 STQTIEAGVDLDFDMAFRDFAPIDSLIQTAGRVNREGRK----GEYLPVYIVQLESDNHY 637 Query: 694 GRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIY-----DDAEMDEPEWVGN 748 +Y T + ++ + Y + D Y E Sbjct: 638 -----VYELTHRHS-TMKLLQAADEIK---EPQYGRLADEYYTLALARGISDRSKELWQE 688 Query: 749 GMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTS 803 G+ K + ++ + + + + E L T+ LL Y + Sbjct: 689 GIMKLNFEKLKEFQLIQNTGEVVDVFV-----EDCLKATQLANAYEELLRYKEYD 738 >UniRef50_Q2NH80 Predicted helicase n=1 Tax=Methanosphaera stadtmanae DSM 3091 RepID=Q2NH80_METST Length = 795 Score = 243 bits (619), Expect = 3e-62, Method: Composition-based stats. Identities = 126/828 (15%), Positives = 285/828 (34%), Gaps = 124/828 (14%) Query: 26 LLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIAL-HDIGKFDIRFQ 84 L H L+VA + N + A L F I L HD K FQ Sbjct: 18 PLTEHLLNVA-----------ENSRSIFENLNIENNSFYASLSFLIGLCHDFAKCTSFFQ 66 Query: 85 YKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPH 144 +++ A Y+ + + E + + ++ Sbjct: 67 KH-------------LFGIENSEKAYHSFLSAIFGYYVIKKYIKENEIKEELNYP----- 108 Query: 145 PYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLT 204 + HHG + + +KS + + Y + + + F Sbjct: 109 -----IIGYICIINHHGNLKDVYNTEKSEFNKINQIPQYLDEQIKDIKSRNISSLKEFYL 163 Query: 205 PAGLSINDIPPDCSSLLAGFCSLAD--------WLGSWTTTNTFLFNEDAPSDINALRTY 256 +SI+D + + + D + L D + L Sbjct: 164 KYNISIDDFLEEYEEIKS--VIKKDLKIIYREKRI---DNYFNVLILFSVLLDSDKLDAS 218 Query: 257 FQDRQQDASRVLELSGLVSNKRC--YEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEA 314 + + L L ++ YEG++ + + YQ +L ++ + + + I Sbjct: 219 YTETYPRQELNANLVDLYKQEKFGQYEGINEIREEAYQ--ELTSSLENIDLNNKIYSITL 276 Query: 315 PTGSGKTETALAYAWKLI-----DQQIADSVIFALPTQATANAMLTRMEASASHL-FSSP 368 PTGSGKT +A ++A KL ++ I +I+ +P + + + ++ + + Sbjct: 277 PTGSGKTMSAFSFALKLRRKIKNEKNIIPRIIYTMPFLSIVDQNEEVLRKILNYSNYDTS 336 Query: 369 NLILAH-GNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQV 427 ++++ H S +++ + I + E+A + + ++ + + +I + T Q+ Sbjct: 337 DILIKHNSTSELSYVVNKNGTTKIQDDPTEKAELDVDK--AEMLLEGWYSEIVITTFYQL 394 Query: 428 LISVLPVKHRFIRGL-GIGRSVLIVDEVHAYDTYMNGLLEAVLKAQ-ADVGGSVILLSAT 485 +++ K++ +R I S++IVDE + N + + L +I ++AT Sbjct: 395 AYTLISNKNKALRKFHNISNSIIIVDEAQSIPAKYNQIFKTALDYLSKKFNVWIIFMTAT 454 Query: 486 LPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPI 545 P K E++ PLI N + FD + P+ Sbjct: 455 QPEIFK--------------ESDGILPLIT----NEQKYFDCFDR-----VNYVFHHTPM 491 Query: 546 CLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQ-VDIDLFHARF 604 + D + + + ++ N + + ++ ++ + + +++ Sbjct: 492 TIDDFKEKIVDI-----IQENNKDIMIVLNTISSSTEIFEYIQGYFDEEGIELYYLSGNI 546 Query: 605 TLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLG 664 ++ E+ ++ + N +++V TQ++E +++D D + D + Q G Sbjct: 547 IPKEKLERIKKIK-------ESNNRKVIVTTQLIEAGVNIDVDIIYRDFAVMDSIIQTAG 599 Query: 665 RLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFP 724 R +R+ +K + V I L + IY + ++ T++ ++ + Sbjct: 600 RCNRNDKKEKGT-----VNIIHLINENKREYSSFIYDST-LLRLTEELTKDYTE--ISEK 651 Query: 725 DAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETIL 784 D + Y + V N + S EK K+ E+ L ++D Sbjct: 652 DFNLKISKKYYTE--------VNNRISHDASHNLEKIISTLKISNITHEFKLIEDD---- 699 Query: 785 AVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVN 832 E + ++ ++Y D + + + L L ++N Sbjct: 700 -----IEKIDVFIEINDEATEIWDKYNEIYSDKNLKNYEKKLKLKKIN 742 >UniRef50_B7KMS0 CRISPR-associated helicase Cas3 n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7KMS0_CYAP7 Length = 827 Score = 242 bits (617), Expect = 5e-62, Method: Composition-based stats. Identities = 116/594 (19%), Positives = 210/594 (35%), Gaps = 98/594 (16%) Query: 264 ASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTET 323 A + + K + + L N ++ R+ Q V LT+ A GSGK+ Sbjct: 274 AWKEWRKHNQFNTKFEQQNLRKLPPN-FKLRKFQKQVGRAKTK--LTLAIAGCGSGKSIA 330 Query: 324 ALAYAWKLIDQQIAD-----SVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNS- 377 A + + V F LPT T + + S + L H S Sbjct: 331 AYIWMLLWCKRFQQQGRTNFRVFFCLPTTGTTTEHFK--DYALESGISEEQIGLTHSRSF 388 Query: 378 -RFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNK------KVFLGQIGVCTIDQVLIS 430 + ++ + + E + + + ++ + ++ + V T D +L Sbjct: 389 VDLETMAETSDQEEVIKDNDENDPPRVAEAVLKAQRDKIESLALWSTPLVVTTADTILGL 448 Query: 431 VLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQ 490 + + I +SV++ DE+HA+D + G L LK ++ V+L++A+LP + Sbjct: 449 MANSRRGIYSIPAIMQSVIVFDEIHAFDEVLLGHLLVFLKNFPNL--PVLLMTASLPEQY 506 Query: 491 KQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADM 550 Q + R DL P + E + Sbjct: 507 LQAI--------------------------EKIRPDLALIPGDSRLE---ELERYTIDYP 537 Query: 551 LPDLTMLERMIAAANAGAQVCLICNLVDVAQVCY-QRLKELNNTQV----DIDLFHARFT 605 + + + + +V + N V+ A + Y Q + N V I+++H+R Sbjct: 538 TTEEKVWQAVKECLAENGKVLWVRNQVEWANIIYHQAITHAENEPVFANTSINVYHSRLR 597 Query: 606 LNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGR 665 DR + +VI +F K G+ L+ATQV E SLD+ D LIT P L QR+GR Sbjct: 598 YKDRSYRHRQVIDDFSKKGQS---AFLIATQVAEMSLDLSADLLITDIAPIPSLIQRMGR 654 Query: 666 LHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELN--GASLFF 723 L+R +P + + L + + Y + + QQ ++ L L Sbjct: 655 LNRRATPEKPGNPKSALICALSNE-----KDVKPYESKD-LKMAQQWLDALKLLNKPLSQ 708 Query: 724 PDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETI 783 D +Q+ + N ++ A+ E+R L W Sbjct: 709 KDLVKQF--------------KLPNNEPEYNYAKAEERACFFSGL-WQTRPGF------- 746 Query: 784 LAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEA-LALNRVNVPFT 836 TR ++P++ LD ++ E+ + L V++P Sbjct: 747 ---TRGEGYTIPVILKKD-------LDVWKKDNPKKEKPDQEWLRRYEVSIPIR 790 >UniRef50_UPI0001C373E8 CRISPR-associated helicase Cas3 n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C373E8 Length = 774 Score = 241 bits (615), Expect = 8e-62, Method: Composition-based stats. Identities = 111/697 (15%), Positives = 222/697 (31%), Gaps = 135/697 (19%) Query: 73 LHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSL 132 LHDIGK F + G S + +H AG + ++ +S Sbjct: 46 LHDIGKLCTDF--------------DNYIRGTSGFSRGEVDHSYAGAKYITGNTDKARS- 90 Query: 133 GDFFSFFDAAPHPYESWFPWVEAVTGHHGF-----------------ILHSQDQDKSRWE 175 + HHG + DQ K Sbjct: 91 --------------GVARLIARVIISHHGIHDWVDENCRDYFHIRIANDKNYDQIKENLS 136 Query: 176 MPASLASYAAQDKQAREEWISVLEALF-LTPAGLSINDIPPDCSSLLAGFCSLADWLGSW 234 S + K+A +E+ ++ + + ++ L+ AD Sbjct: 137 QIISDDEFDEFLKKADDEYRAICQKIKNISKNKTDCAFYLGSLERLIESALVDADR---- 192 Query: 235 TTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPR 294 T T +F+ NE+ P + + + L + + Sbjct: 193 TDTASFMDNEEYPEFPGNTELWHSMKSNMEKK---LDSFSDRTDVISKQRKSISDRC--- 246 Query: 295 QLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAML 354 D + + PTG GKT ++L +A + + + + + P + +L Sbjct: 247 -----ADFAKNNVKICRLIVPTGGGKTLSSLRFAIEYCLEHGMEKIFYTAPFMS----IL 297 Query: 355 TRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKV 414 + + N I H ++ + E+ + + ++ K Sbjct: 298 EQNSEEIKGIAGDDNFIEHHSDA-------------LAEKSDNSEELSAYELHTERWDK- 343 Query: 415 FLGQIGVCTIDQVLISVLPVKHRFIRGLG-IGRSVLIVDEVHAYDTYMNGLLEAVLKAQA 473 + T+ Q+L ++ K +R + +SV+I+DEV + + + + + Sbjct: 344 ---PVIATTMVQLLNALFLGKTSSVRRFHRLAKSVIIIDEVQSIPLKCVNMFDLAVNFLS 400 Query: 474 DV-GGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPE 532 ++ G +++L +AT P V ++ +P+ L+ E Sbjct: 401 NICGAAIVLCTATQP-----------------VTDDVRFPM-------------LMDEKE 430 Query: 533 QLPPRFSIQPEPICLADMLPDL--------TMLERMIAAANAGAQVCLICNLVDVAQVCY 584 + F+ E +++P++ + I + + +I N A Y Sbjct: 431 SMTGDFTADFELFRRTEIIPEIDEYGYSYEEAADFCIEKFTSSGDLLVIVNTKSSALKMY 490 Query: 585 QRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDV 644 + +KE V++ RR+K + I V TQ++E +D+ Sbjct: 491 ELIKEKCGDDVEVVHLSTNMCPQHRRDKIEAIRGLLN----EKKPVICVTTQLIEAGVDI 546 Query: 645 DFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVR 704 F ++ D Q GR +RH + PV I L + E G + I + Sbjct: 547 SFRCVVRSLAGLDSAVQAAGRCNRHGENKD----KCPVYLIKLKE-EKLGNLKEISTAQD 601 Query: 705 VMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMD 741 + TQ+ I+ + PD + +YD + D Sbjct: 602 I---TQRIIDNKKNEDISLPDVVSDYFRELYDIEKND 635 >UniRef50_Q3AA66 CRISPR-associated helicase Cas3 n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AA66_CARHZ Length = 814 Score = 241 bits (615), Expect = 8e-62, Method: Composition-based stats. Identities = 126/715 (17%), Positives = 239/715 (33%), Gaps = 109/715 (15%) Query: 39 DCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIAL-HDIGKFDIRFQYKSAESWLKLNPA 97 D + + + F L ++ L L HD GK+ FQ + + Sbjct: 17 DHLQEVTASMVKKFQGLPGLDREAFLKSLKA-AGLGHDFGKYTSYFQ----DHLVNKKAV 71 Query: 98 TPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVT 157 P +H W + L+E G H Y + ++ AV Sbjct: 72 GPL-----------SHHAFLSAVWASAQFLNENIEG---------SHQYLALLIFL-AVL 110 Query: 158 GHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAG---------- 207 HHG + H + S+ + + A Y K E LE L L P Sbjct: 111 RHHGDLDHPLNNLASKRALREN-AVYNESLKNKLEILKMQLEDLLLNPEIDRENQELWQK 169 Query: 208 -----LSINDIPPDCSSLLAGFCSL-ADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQ 261 L + + + L +L D L FLF + L + Sbjct: 170 HGFKYLPLGEFTRNYQDYLGRLYTLYQD-LTEEEEEIRFLFYFATLYLYSLLIDSDKKSA 228 Query: 262 QDASR--VLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVA------PGLTVIE 313 A + + + + + Y Q L + + + Sbjct: 229 AQALKEFARKELPFSVMAEYQKELSQKAEKSYVNTLRQNLFAKVISNVEKHFEGEIFSLT 288 Query: 314 APTGSGKTETALAYAWKL-----IDQQIADSVIFALPTQATANAMLTRMEASASHLFSSP 368 APTGSGKT L A+KL ++ +I+ALP + + ++ + Sbjct: 289 APTGSGKTLAGLGAAFKLRELIAREKGYTPRIIYALPFTSIIDQNYEVIKRILETKVT-- 346 Query: 369 NLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVL 428 + N IK + + + + + + +I V T Q+ Sbjct: 347 -------DFPENESLYLIKHHHLADLSFRVEKEEIEVEKALLFTESWESEIIVTTFVQLF 399 Query: 429 ISVLPVKHRFIRGLG-IGRSVLIVDEVHAYD-TYMNGLLEAVLKAQADVGGSVILLSATL 486 + K+R ++ + S++++DEV Y + E L+A + VIL++AT Sbjct: 400 HTFFGFKNRLLKKFHKLSGSIILLDEVQNIPFEYWGAVREIFLQAVKLLDCKVILMTATK 459 Query: 487 PM-KQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPI 545 P+ ++ ++ G + E R L PE++ Sbjct: 460 PLIFSPEECIELAGTEEEIAE-----------MFGALNRVKLSYLPEKMTI--------- 499 Query: 546 CLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFT 605 + + ++ N + + Y+++KEL + + + T Sbjct: 500 --------AEFVRSFKEKYSKDKSYLIVVNTIKSSIELYRKIKEL-DLGIPLFYLSTNIT 550 Query: 606 LNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGR 665 +R ++ + ++N +LV+TQVVE +D+D +I P D + Q GR Sbjct: 551 PKERSQRLLAIKQL----NQQNKPFVLVSTQVVEAGVDLDASCVIRDAGPLDSVIQVAGR 606 Query: 666 LHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGAS 720 +R +K E+ + ++ +G+ + IY V ++ +T++ +EE Sbjct: 607 CNRSGQKELG---EVILMNLITDEGKDF--ATRIYGPV-LLKQTRELLEEAREIE 655 >UniRef50_D2MAH9 CRISPR-associated helicase Cas3 n=1 Tax=Rhodopseudomonas palustris DX-1 RepID=D2MAH9_RHOPA Length = 772 Score = 240 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 146/806 (18%), Positives = 258/806 (32%), Gaps = 147/806 (18%) Query: 14 SSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSK--QRVKAWLLFFI 71 + + T +D L H +VA L F + Sbjct: 4 AHSTPTSEDDWEPLPRHLHEVA-----------KLARQFGAKFGGGNAAEIAGR------ 46 Query: 72 ALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQS 131 LHD+GK+ FQ + Q R +H AG + Sbjct: 47 -LHDLGKYSAAFQ-----------------HYLRGQRPRGVDHATAGAQEVVKLGTGING 88 Query: 132 LGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAR 191 L + GHHG + + S+ + Sbjct: 89 L---------------IARLLACGIAGHHGGLPDPLGAGSLDDRLKKSVEPLDPIWRSEV 133 Query: 192 E-EWISVLEALFLTPAGLSINDIPPDCSS------LLAGFCSLADWLGSWTTTNTFLFNE 244 E ++ A F G P +L AD+L T + E Sbjct: 134 ACEASPLMPAPFELYKGAQQPGPPRQAFQFAFLGRMLFSCLVDADFL---CTEAFYAAVE 190 Query: 245 DAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALP 304 P D + ++++ GL++ Y Q L+ + A Sbjct: 191 GRPVDRD---------WPRLPQIVD--GLIARFDGYMADKQQRARHGQLNTLRRDILAHV 239 Query: 305 VAP-----GLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEA 359 + G+ + PTG GKT +LA+A + D +I+A+P A++ + Sbjct: 240 RSKAELPRGVFTLNVPTGGGKTLASLAFALNHAKRHQMDRIIYAIPF----TAIIEQTAG 295 Query: 360 SASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQI 419 L+ H + L IK+ +G ++ L+ N + + Sbjct: 296 VFRDAIGDETLLEHHSAIELDAL--DIKADNGEARGIDDGARDGKLRLAAEN---WAAPV 350 Query: 420 GVCTIDQVLISVLPVKHRFIRGL-GIGRSVLIVDEVHAYDTY-MNGLLEAVLKAQADVGG 477 V T Q+ S+ + R L + +V+++DE + + A+ + + G Sbjct: 351 IVTTNVQLFESLFANRTSRCRKLHNLANAVIVLDEAQTIPRNVLLPCIAALDELARNYGC 410 Query: 478 SVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPR 537 +V+L +AT P + G+ + +L +PEQL Sbjct: 411 TVVLCTATQPALGADRFTG---------------------GLQLSPDSELAPNPEQLHT- 448 Query: 538 FSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDI 597 +++ LA D +L+ + A + AQ +I N A+ Y+ K Sbjct: 449 -ALRRTTQRLAGEWSDDQLLDDI--AQSGSAQALVIVNSRRHARALYEAGKRRAVEG--- 502 Query: 598 DLFH--ARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCP 655 L H R DRR + + +++AT +VE +D+DF + Sbjct: 503 -LLHLTTRQIPADRRAILAEIRQRLA----NDAPCVVIATSLVEAGVDLDFPRVWRAEAG 557 Query: 656 ADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEE 715 D L Q GR +R R A ++ + TI P E ++ T + +E Sbjct: 558 LDQLAQAAGRCNREGR----APADVSIVTIFKP-----AAAEPPPEIHGLVGDTYRILEN 608 Query: 716 LNGASLFFPDAYRQWLDSIY----------DDAEMDEPEWVGNGMDKFESAECEKRFKAR 765 + LF P+A + + +Y + D + MD+F + + F R Sbjct: 609 -HEGDLFSPEAMEAYFNEVYWRLQDGLDRIHIPDADGRKVPAKTMDQFTVSAGQPHFAYR 667 Query: 766 KVLQWAEEYSLQDNDETILAVTRDGE 791 V E + L ++ + V D E Sbjct: 668 TVG---EAFRLIESGMAPVIVPTDAE 690 >UniRef50_C1TQC9 CRISPR-associated helicase Cas3 n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TQC9_9BACT Length = 712 Score = 240 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 117/581 (20%), Positives = 204/581 (35%), Gaps = 87/581 (14%) Query: 305 VAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHL 364 +PGL + PTG+GKT T L A+++ + S+I+ALP + ++ + + A L Sbjct: 197 TSPGLYTLTLPTGAGKTVTGLEIAYEIASRNGYKSIIYALPFIS----IIEQNSSVAKEL 252 Query: 365 FSSPNLILAHGNSRFNHLFQSIKSRAITEQGQ-EEAWVQCCQWLSQSNKKVFLGQIGVCT 423 F ++ H Q I + + + W + + + + + T Sbjct: 253 FGIESVQEDHS--------QMISGKEVPDDDDVYSPWDKMSVLF-----RYWRSPVILTT 299 Query: 424 IDQVLISVL-PVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQ-ADVGGSVIL 481 + Q+ S+ P + + + RSV+I+DE + L +G IL Sbjct: 300 MVQLWNSIYDPRANSSMDFHRLSRSVVIMDEPQGIPPKFWSGMGKTLDFLSEKLGTYFIL 359 Query: 482 LSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQ 541 ++AT P G + +P + R +F L Sbjct: 360 MTATQPQI---------GEGIEISPKRYHFPNVRHRYKVLKDKFPL-------------- 396 Query: 542 PEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFH 601 D LPDL + E + A +G ++ N A Y LKE + D+ Sbjct: 397 -------DDLPDL-LFESLPVARGSG---LVVLNTRKSAIRTYNLLKE--RLEGDVYFLS 443 Query: 602 ARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQ 661 A T RR +V+ + L++TQVVE +D+DFDW+ P D + Q Sbjct: 444 AWMTPIHRR----KVLKRIKQAQLSGEPYYLISTQVVEAGVDLDFDWVFRDMGPLDSVVQ 499 Query: 662 RLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASL 721 GR +RH R + ++Y +V ++ R+++ + + Sbjct: 500 VAGRCNRHGDPSRMGKVLVAEIIA----ENKVPYCSYVYDDV-LLERSRRILRDRGN--- 551 Query: 722 FFPDAYRQWLDSIYD---DAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQD 778 F Q + + Y D P W + E E+ R + L Sbjct: 552 FDERDIPQIVQTYYGEIMDGISFSPVWEKLQKGLWGPEEKEELIP-RDFKGFRVFVELDQ 610 Query: 779 NDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWK 838 + IL RD + +L L K+L ++ + + E E L W+ Sbjct: 611 DIRYILLRLRDDKWTLESL-----DEKKRL--AKITQQYAIEVPIEELKQ--------WR 655 Query: 839 RSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGM 879 + + ED + L D W ++ Y G Sbjct: 656 GELARFLTEDDIPPLGPFLGDDSWFLTSAAVGDIYDDQVGF 696 >UniRef50_C0E033 Putative uncharacterized protein n=1 Tax=Corynebacterium matruchotii ATCC 33806 RepID=C0E033_9CORY Length = 552 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 106/509 (20%), Positives = 196/509 (38%), Gaps = 38/509 (7%) Query: 354 LTRMEASASHLFSSPNLILAHGNSRFNHLFQ---SIKSRAITEQGQEEAWVQCCQWLSQS 410 + R++ + ++ LAHG + + S+ + + Q+ + +++ Sbjct: 1 MRRVQKAFK--GTTNVASLAHGLAITEDFYSQNISVSDVMVGDNYQDNGGLFPTEFVKSG 58 Query: 411 NKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLK 470 + L + V TIDQ ++ LP K +R L + + +++DEVH D Y + LLE +L Sbjct: 59 ASR-LLAPVCVGTIDQAILGSLPTKFNHLRLLALANAHVVIDEVHTLDAYQSELLEDLLH 117 Query: 471 AQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAH 530 A + L+AT+P Q++K Y H + ++ R + Sbjct: 118 WWAATHTPITFLTATMPAWQQEKFKQAYSKHDSDPAHFPSFTTWLPRSGDELDSAPATDA 177 Query: 531 PEQL----PPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQR 586 P + P + +P+ ++ + A A++ +ICN VD AQ Q Sbjct: 178 PPVVIPTEPYTIDLTVDPVPYDQLVDSHIRWIQDQRQAYPQARIGIICNTVDRAQAIVQA 237 Query: 587 LKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDF 646 N L H+R T RR + + GKNG ++V TQ +E SLD+D Sbjct: 238 FNHENP-----VLLHSRMTAEHRRRNAEELEQSIGKNGAATT-VLVVGTQAIEASLDIDL 291 Query: 647 DWLITQHCPADLLFQRLGRLHRHHRKYR----PAGFEIPVATILLPDGEGYGRHEHIYSN 702 D L T+ CPA+ L QR GRL R R P ++ + + + + + + Sbjct: 292 DVLRTELCPAESLIQRAGRLWRRDDAARADRVPGLAHKTISIAAIDNPKEWQTKPYFAAQ 351 Query: 703 VRVMWRTQQHIEELNG-ASLFFPDAYRQWLDS----IYDDAEMDEPEWVGNGMDKFESAE 757 + + ++E++G L FPD + +++ + + + N E AE Sbjct: 352 LDRVAHWIAALDEVDGKKPLRFPDQIQDFINQSSMGLAELLTTLNDDEDDNASGMDEIAE 411 Query: 758 CEKRFKARKVLQWAEEYSLQDN------------DETILAVTRDGEM-SLPLLPYVQTSS 804 + A + L D+ DE TR + ++P + + T + Sbjct: 412 LIHKINAGNNARIDFSTVLADDATNTDFFTITHKDELAETATRLIDRITIPAILHDPTGT 471 Query: 805 GKQLLDGQVYEDLSHEQQYEALALNRVNV 833 G + + S + + Sbjct: 472 IPGAWTGSIADLNSIKWHDTEAIREALRA 500 >UniRef50_C5BP95 CRISPR-associated helicase Cas3 domain protein n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BP95_TERTT Length = 818 Score = 238 bits (608), Expect = 5e-61, Method: Composition-based stats. Identities = 114/719 (15%), Positives = 215/719 (29%), Gaps = 102/719 (14%) Query: 48 LQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQ 107 L +F L++ L LHD GK+ FQ + L+ P Sbjct: 26 LAASFAEKVGLAE--AGRLLGL---LHDFGKYSNSFQAYIKSANADLDRDDADFVDPVAM 80 Query: 108 MCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQ 167 K +H AG + + L + A + + + HHG +++ Sbjct: 81 KG-KIDHSTAGTQFIWKLLLER---------YPAVGNVHCVAQILAICIASHHGGLINFL 130 Query: 168 DQD-----KSRWEMPASLASYAAQDKQAREEWIS---------VLEALFLTPAGLSINDI 213 DQ R L Y + E + L + + + D Sbjct: 131 DQSGDNRFNIRLAKADDLTHYTECLENCGEVFREGIQSQVNNEFLRSFIVVLKSMYPADA 190 Query: 214 PPDCSSLLAGFC--------SLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDAS 265 + GFC AD + S N +R + Sbjct: 191 KQTIAFFYLGFCTRFLFSCLVDADRINSIEFDNPKAKALRLKRKKQFSWDTAIERLEAYL 250 Query: 266 RVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETAL 325 L+ + ++ R + ++ GL + PTG GKT +L Sbjct: 251 STLDTNKSINRLRAQISL--------------DCLNKAASPTGLFKLSVPTGGGKTLASL 296 Query: 326 AYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQS 385 +A + D VI+ +P + H + +L H ++ L Sbjct: 297 RFALQHAKLNKLDRVIYIIPYTSIIEQNAHVAREVLEHAGDEFSWVLEHHSNLEPEL--- 353 Query: 386 IKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLG-I 444 W S+ + + + T+ Q L ++ R R + + Sbjct: 354 ------------------QTWESKLLSQNWDAPVVFTTMVQFLEALFGGGTRGARRIHQL 395 Query: 445 GRSVLIVDEVHAYDTYMNGLLEAVLKAQAD-VGGSVILLSATLPMKQKQKLLDTYGLHTD 503 RSVLI DE+ L + + ++ +AT P+ + + L Sbjct: 396 ARSVLIFDEIQTLPVRCMHLFCNAINFLTQSANTTAVMCTATQPLLDRLSKPELGQLEFS 455 Query: 504 PVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAA 563 P + +N DL P + ++E ++ Sbjct: 456 SGAELVEDPTALFASLNRVSVEDLCKQPGWT------------------ESEIVELVLDT 497 Query: 564 ANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKN 623 +I N A+ ++R E +I R + V Sbjct: 498 YKKNKTCLVIVNTKAWAKRLFERCGEFLPAD-NIYHLSTNLCAAHREDIFKEVRMRL--- 553 Query: 624 GKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAG-FEIPV 682 + + ++TQ++E +D+ F ++ D + Q GR +R+ +G + Sbjct: 554 -EAKRPTLCISTQLIEAGVDISFASVVRFLAGLDSIAQAAGRCNRNRELEDESGNAALGH 612 Query: 683 ATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMD 741 I+ P+ E G I T++ + E ++L P+A ++ + D + D Sbjct: 613 VYIVSPEDENLGSLVDIQLGQA---ATRRVLGE-GFSNLLSPEAIERYFFYYFSDRKDD 667 >UniRef50_UPI000197377D putative helicase n=1 Tax=Clostridium sp. M62/1 RepID=UPI000197377D Length = 758 Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 146/822 (17%), Positives = 272/822 (33%), Gaps = 171/822 (20%) Query: 73 LHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSL 132 LHDIGK+ FQ + T+ +K +H AG + Sbjct: 53 LHDIGKYSFEFQKRL------------------TENGKKVDHATAGARLCWEQ------- 87 Query: 133 GDFFSFFDAAPHPYESWFPWVEAVTGHH-GFILHSQDQDKS-----RWEMPASLASYAAQ 186 PY + AV GHH G D D + + M L S+ Sbjct: 88 ----------KGPYSPYGMLAYAVAGHHSGLPDTGGDGDLAGRGTLKGRMKKKLCSFEEY 137 Query: 187 DKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDA 246 K+ +S T G +L AD+L T F+ + Sbjct: 138 RKEVDFPALSAPTNFRGTDRGEDPGFAQSFLIRMLYSCLVDADYL----DTEAFMKEKVE 193 Query: 247 PSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVA 306 L + + ++ +SG + N NG + L+ ++ + Sbjct: 194 RDSGEKLESLLKKLEK------HVSGWLDNHDRRTV------NGRRSEILRQCLEKGTLP 241 Query: 307 PGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFS 366 GL + PTG GKT ++LA+A + + VI+ +P +++ + S + Sbjct: 242 RGLFRLTVPTGGGKTISSLAFALRHGAEHEMKRVIYVIPY----TSIIEQNAKIFSDILG 297 Query: 367 SPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQ 426 N++ H N + + + ++ +++ K + V T Q Sbjct: 298 RENVLEDHCNIDY----------------ESDEELKPLHLAAENWDK----PVVVTTNVQ 337 Query: 427 VLISVLPVKHRFIRGL-GIGRSVLIVDEVHAYD-TYMNGLLEAVLKAQADVGGSVILLSA 484 S+ K R L I SV+I DE Y+ + A+ + +++L +A Sbjct: 338 FFESLFSNKSSKCRKLHNIADSVIIFDEAQMLPCEYLRPCIAAMEELLLRYRSTLVLCTA 397 Query: 485 TLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEP 544 T P GL + P + ++F + L + Sbjct: 398 TQPALG--------GLFRKSITWEELCP-------DREEQFQFFKRCQILNLGRIRR--- 439 Query: 545 ICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFH--A 602 E +I Q I N Q YQ LKE + ++FH Sbjct: 440 -------------EELIDRLEQEDQALCILNTKREVQEVYQELKERRGQSSEGEIFHLST 486 Query: 603 RFTLNDRREKENRVISNFGKNGKRNVG-------------------RILVATQVVEQSLD 643 + R+ + GK + I++AT +VE +D Sbjct: 487 QMYPEHRKAVLEEIRKRTGKRAEGKSQIEKTGIEEETEETESAGNVCIVIATSLVEAGVD 546 Query: 644 VDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNV 703 +DF + + D Q GR +R ++ + + + D EG + Sbjct: 547 LDFASVYREMAGLDSAIQAAGRCNREGKRP------LEESRTWIFDMEGEKKTAEQEQRA 600 Query: 704 RVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFK 763 VM + + E G SL P+A ++ +Y +F+ +E ++ K Sbjct: 601 EVMSGMLEKL-ERAGKSLNSPEAAEEYFRYLY----------------QFKGSELDR--K 641 Query: 764 ARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQY 823 +S + + E ++ LL V+ S+ K + ++ S ++ Sbjct: 642 HIMEYFHPGNFSFASAAQEFKMI---EEHTVSLLIPVEESAEKIAEEIRLKG-CSRKRMR 697 Query: 824 EA----LALNRVNVPFTWKRSFSEVV---DEDGLLWLEGKQN 858 EA +++++ + + +E++ +EDGL L+ ++ Sbjct: 698 EAGRYSVSVDKKKIEEFCRNGIAELLTEGEEDGLYLLKRREQ 739 >UniRef50_B9M5K0 CRISPR-associated helicase Cas3 n=2 Tax=Deltaproteobacteria RepID=B9M5K0_GEOSF Length = 822 Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 128/692 (18%), Positives = 223/692 (32%), Gaps = 119/692 (17%) Query: 73 LHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSL 132 LHD+GK+ FQ S K+ P + +M K +H AG + + + Sbjct: 51 LHDLGKYSAAFQSYLQSSEGKIEPDEEEYV-DAGRMKGKIDHSTAGAQYLREQGKKDSRF 109 Query: 133 GDFFSFFDAAPHPYESWFPWVEAVTGHH-GFI----LHSQDQDKSRWEMPASLASYAAQD 187 + A + HH G I D R + P +A D Sbjct: 110 WQIATDIMAL------------CIASHHSGLIDCLASDGADVFTKRMQKPGDKTHFAEVD 157 Query: 188 KQAREEWISVLEALFLTPA-----GLSINDIPPDCSSLLAG-------------FCSLAD 229 + E+ + ++AL + + + D SL G AD Sbjct: 158 RNLEEQVRNRVQALLTSTQIENEMRRLLERLGKDMPSLEIGQFMLGFLTRFLFSALIDAD 217 Query: 230 WLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDN 289 L S D L + + L+G R E + ++ Sbjct: 218 RLNSAER------KPANKPDWQPLIDLLE---------IHLAGFTVRNRIDEIRADISES 262 Query: 290 GYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQAT 349 Q + GL + PTG GKT +L +A + D +I+ +P + Sbjct: 263 CLQ---------SAARGKGLIQLTVPTGGGKTLASLRFALHHAAKHGMDRIIYVVPYTSI 313 Query: 350 ANAMLTRMEASASHL-FSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLS 408 + + + L + ++L H ++ EQ E+ + W Sbjct: 314 IDQNARVARSVFAALEKNGRQIVLEHHSNL------------TPEQDTNESKLLAENWNV 361 Query: 409 QSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLG-IGRSVLIVDEVHAYDTYMNGLLEA 467 I T Q L ++ R +R L + +V+I DE+ L Sbjct: 362 ---------PIIYTTAVQFLETLFAAGTRGVRRLHQLANAVIIFDEIQTIPIRTIHLFNN 412 Query: 468 VLKAQ-ADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFD 526 + G +V+ +AT P+ + DP + + N + F Sbjct: 413 AINFMVGQCGSTVVFCTATQPILDR----------VDPKKGAARLASDAEMMPNVGELFR 462 Query: 527 LLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQR 586 L + E C + + E + + V +I N A+ YQR Sbjct: 463 DLHRA---------RIEDHCKDTGWTEEAVAETALQELESSGSVLIIVNKKTQAKALYQR 513 Query: 587 LKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDF 646 L + + + R ++V + N + + I ++TQ++E +DVDF Sbjct: 514 LHDKLDH---VYHLSTSMCPAHRTAILDKVKACL--NPENPLPVICISTQLIEAGVDVDF 568 Query: 647 DWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVM 706 +I D + Q GR +R+ + +I I+ P EG R I + V Sbjct: 569 GTVIRYLAGLDSIAQAAGRCNRNGLR------KIGRVLIVNPANEGLDRLPEIRNAQDV- 621 Query: 707 WRTQQHIEELNGASLFFPDAYRQ--WLDSIYD 736 T++ + E FF + L+ YD Sbjct: 622 --TKRVLREFKDNPDFFNRDLQSPKSLERYYD 651 >UniRef50_A4J384 Metal dependent phosphohydrolase n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J384_DESRM Length = 731 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 127/793 (16%), Positives = 257/793 (32%), Gaps = 159/793 (20%) Query: 9 HYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLL 68 +Y+ S K K N HLL H + V +TF ++ + Sbjct: 2 NYYAHSDKEKDK-NQWHLLRDHL-----------QGTGVTASTFAKSFGGET------IA 43 Query: 69 FFIAL-HDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSL 127 L HD+GK+ FQ + +K++ H AG Sbjct: 44 HVAGLLHDLGKYSPEFQKRLEGHSIKVD------------------HSTAGAI------- 78 Query: 128 SEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHH------GFILHSQDQDKSRWEMPASLA 181 + + GHH G + + + Sbjct: 79 ------------EGGKRYGLIGKILAYIIAGHHSGLPDWGSVADETSLEARLKKKLYDYM 126 Query: 182 SYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFL 241 S++ + E+ I++ + AG S+ + LL AD+L T L Sbjct: 127 SFSKEINLPVEKDITMPAIRPIVGAGFSVQFLTR----LLYACLVDADFL----DTERAL 178 Query: 242 FNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVD 301 E A + + + + + L N + + L + Sbjct: 179 NPEKAAARVKKYS--LKKLSNNLEQYLN--------NLCTKASDTAINRKRYKILANCRE 228 Query: 302 ALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASA 361 PGL + PTG GKT ++L++A + + + + + +P +++ + Sbjct: 229 KAECEPGLFTLTVPTGGGKTLSSLSFALRHAIRYEKERIFYVIPF----TSIIEQNAMVF 284 Query: 362 SHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGV 421 + N++ H N + Q + ++ ++ + + Sbjct: 285 KRVIGEENVLEHHSNFAYPQEDQWEMENDLADKLAQQKLATEN----------WDMPVIA 334 Query: 422 CTIDQVLISVLPVKHRFIRG-LGIGRSVLIVDEVHAYDT-YMNGLLEAVLKAQADVGGSV 479 T Q S+ K R + SV+I+DE T ++ L AV++ A+ ++ Sbjct: 335 TTNVQFFESLFAAKSSRCRKIHNLANSVIIIDEAQMIPTGFLKPCLNAVVELVANYHATI 394 Query: 480 ILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFS 539 +L +AT P K P +++ +PE+L F Sbjct: 395 VLCTATQPAINK-------------FLPKEIVP------------VEIIDNPEELYKAF- 428 Query: 540 IQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDL 599 + + + D+ ++E++++ QV I N A++ Y+ ++ Sbjct: 429 -KRVQVHNIGTVSDVELVEKLVSQD----QVLCIVNSKKHARILYEGIRGDG-----TFH 478 Query: 600 FHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLL 659 R R +V+ + K +++TQ++E +D+DF + D + Sbjct: 479 LSTRMCPVHR----TKVLEMVKERLKEGQVCRVISTQLIEAGVDIDFPVVYRSMAGIDSI 534 Query: 660 FQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQH---IEEL 716 Q GR +R + + P+ G R + RT + + Sbjct: 535 AQSAGRCNREGLREMG------QVYVFWPEKHGMPRGW--------LNRTASLGSMVFKR 580 Query: 717 NGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSL 776 L + + S+YD + + M+ E + RF R + AE++ L Sbjct: 581 YEDPLGLEG-VKAYFTSLYDVDAAELDKKCI--MEDIREQERQLRFPFRTI---AEKFKL 634 Query: 777 QDNDETILAVTRD 789 +++ + + + D Sbjct: 635 MNDNTSTIVIPWD 647 >UniRef50_B1XPP6 CRISPR-associated helicase n=2 Tax=Chroococcales RepID=B1XPP6_SYNP2 Length = 763 Score = 237 bits (603), Expect = 2e-60, Method: Composition-based stats. Identities = 150/758 (19%), Positives = 253/758 (33%), Gaps = 120/758 (15%) Query: 12 GKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEML--SKQRVKAWLLF 69 KS + L+ H A V + L + L S Q +++ Sbjct: 12 AKSFEPGHWKGSYS-LVGH---TADVVNAITTLVDTLGDRLITQFGLTCSFQYLRSTARL 67 Query: 70 FIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQ-DSLS 128 LHD GK + FQ S P P H A + + Sbjct: 68 AAYLHDWGKGNNHFQGMVRASIPGATPKRFFDQSPQM-----LRHEIASVLLAWEFREWL 122 Query: 129 EQSLGDFFSFFDAAPHPYESWFPWVEAVTGHH----GFILHSQDQ-DKSRWEMPASLASY 183 EQ+ GDF++ A GHH G + D+ + R A + Y Sbjct: 123 EQADGDFYTAL--------------VAAGGHHLKLGGRDGKATDELGEIRQSGDAQIYLY 168 Query: 184 AAQDKQAREEWISVLEALF-------LTPAGLSINDIPP---------DCSSLLAGFCSL 227 A Q K+ + + + L P + ++ P + + +L Sbjct: 169 ALQKKEGKIAYHPQFKGLLKYSVKALGLPKNIKLSKAPSLQWTRKDIETKQHEIRDYLTL 228 Query: 228 ADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALL 287 DW G + D + +D EL + + + + L Sbjct: 229 -DWEG-DPVFIAVVKALLVAGDCSGSALAKEDVSLQKWIQDELKNTLDEDKLDRVIKSRL 286 Query: 288 DNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQ 347 + ++ R+ Q + + + + A G+GKT A +A + + F PT Sbjct: 287 GD-HELRRFQQDLGKVKS--RVAIARAGCGTGKTLGAYNWAKTHA---LDRKLFFCYPTT 340 Query: 348 ATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWL 407 T+ E ++ L H + + + G + + Sbjct: 341 GTST------EGFIDYVHGKVEAELFHSRYQVDLEMMQTGEENDLDSGADAT-------I 387 Query: 408 SQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEA 467 + + + + VCT+D VL + I + DEVH YD G L Sbjct: 388 KLESFRAWGAESIVCTVDTVLGLFQCNRRPLYCFPAIANGAFVFDEVHCYDAKPFGTLLR 447 Query: 468 VLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDL 527 L+ V+L+SA++ QK + G + +E + RF + Sbjct: 448 FLQVVKA---PVLLMSASVLPWQKAAIEAAVGEPVEVIEGAKDLEAL------PRYRFHV 498 Query: 528 LAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRL 587 L P+ ER+ N+G +V +CN V A Y Sbjct: 499 LDQPD------------------------WERVEQELNSGGKVLWVCNQVQTAIDVYDEA 534 Query: 588 KELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFD 647 K +D L+H+R+ DRR+ V+ F + + V I + TQV E SLD+ Sbjct: 535 K---RRGLDALLYHSRYRYQDRRDHHRAVVDAFKPDQTKPV--IAICTQVAEMSLDLSAT 589 Query: 648 WLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMW 707 L++Q L QRLGRL+RH+ + P + EGY + ++ M Sbjct: 590 LLVSQIADPAGLIQRLGRLNRHYCGHVLDALFYP------DEKEGYPYKKEQLADGLAM- 642 Query: 708 RTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEW 745 Q +E+++ A L QWL++ + D+ E Sbjct: 643 -VQNFVEDVSQAELA------QWLEAFTPEPNQDDGEL 673 >UniRef50_A8UUT3 Predicted helicase n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UUT3_9AQUI Length = 773 Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 133/786 (16%), Positives = 257/786 (32%), Gaps = 152/786 (19%) Query: 46 VVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPS 105 + L N + L K + ALHD GK FQ + P T L Sbjct: 23 LELMNFYMEEVPLLDNETKTTIAVSTALHDFGKCTSYFQEYMRALMEGVRPKTDRLKE-- 80 Query: 106 TQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTG--HHGFI 163 L ++F+ + V HH Sbjct: 81 -----------------------HAFLSGVYTFYSLKELVDDPHLFLFSFVACKRHHTNP 117 Query: 164 LHSQDQ------------------DKSRWEMPASLASYAAQDKQA----REEWISVLEAL 201 ++ D+ + + S + K A + E++ L + Sbjct: 118 YSFTEETSIIDEDLEFLKKQIESIDEGKANIFLSNLNLPEPVKDAVYFKKREFLDNLPDV 177 Query: 202 FLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQ 261 L D+ + + F + D + + + Sbjct: 178 LGEIKRLK-RDVRKCKTEI--------------KDFVKFQYIFSLILDSDKTEAGAKPFR 222 Query: 262 QDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKT 321 + + +VS K + ++ + +VL + + L I PTG GKT Sbjct: 223 PERVEKIPPKAVVSFKEKNLKEDSPINRLREEAFREVLEHKIDTSQRLYSITLPTGMGKT 282 Query: 322 ETALAYAWKLI-----DQQIADSVIFALPTQATANAMLTRMEASASHLFSSPN--LILAH 374 T A+A KL + +I++LP + + +E F + L+L H Sbjct: 283 LTGFAFALKLRKTIVKETGTVPRIIYSLPFLSIIDQNAEVLERVLEEEFKEVSGRLLLKH 342 Query: 375 GNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPV 434 + F + + V W S+ + + T Q +++ Sbjct: 343 HHLSQAGDFGEFEFSV--------SRVLTEGWNSE---------VVITTFVQFFEALISC 385 Query: 435 KHRFIRGLG-IGRSVLIVDEVHAYDTYMNGLLEAVLKAQAD-VGGSVILLSATLPMKQKQ 492 ++ R + S++I+DEV + T LL ++K ++ +G I ++AT P Sbjct: 386 RNSTSRRFNKLANSIVILDEVQSLPTKYWHLLREMIKEVSESLGTYFIFMTATQP----- 440 Query: 493 KLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLP 552 Y + + +R+ L +++ F ++ + I Sbjct: 441 ------------------YLVEECVELASKERY--LKDLDRITAHFDLEEKTID------ 474 Query: 553 DLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREK 612 L+ + I N + ++ Y++L+E + DI +R+E+ Sbjct: 475 --EFLDGI--EFRKDKTYLFIANTIASSKELYEKLRE--RLEEDICYLSTSVVPYERKER 528 Query: 613 ENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRK 672 R+ K+ R++V+TQ+VE +D+DFD + P D L Q GR +R+ + Sbjct: 529 IGRI--------KKGDYRVVVSTQLVEAGVDIDFDVVYRDFAPLDSLNQSAGRCNRNMAR 580 Query: 673 YRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLD 732 R + L D +G+ + +Y V ++ TQ +E+++ S + ++ Sbjct: 581 GRGE-----FRVVRLVDEKGHPFTKGVYDAV-LLHITQTLLEDIDSLS---EKDFTLLIE 631 Query: 733 SIYDDAEMDEPEWVGNGMDKFES-AECEKRFKARKVLQWAEEYSLQDNDETILAVT-RDG 790 + W G DK E E K F+ + L D+ V + Sbjct: 632 DYFKKV------WEGMSKDKSEEILEAVKCFRFTGQDVSIRNFRLIDDQPYKRDVFIQLN 685 Query: 791 EMSLPL 796 E ++ + Sbjct: 686 EEAVEV 691 >UniRef50_B1Y4J1 DEAD/DEAH box helicase domain protein n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y4J1_LEPCP Length = 794 Score = 235 bits (599), Expect = 6e-60, Method: Composition-based stats. Identities = 146/806 (18%), Positives = 245/806 (30%), Gaps = 124/806 (15%) Query: 7 ICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAW 66 + +W S + +KG+ HLL H VA C++ M Q+ + Sbjct: 1 MSEFWAHSPSTASKGSG-HLLHDHLQSVA--------------ERACKSFM---QQPGSD 42 Query: 67 LLFFIAL-HDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQD 125 L + L HD+GK+ FQ + A + +H AAG W + Sbjct: 43 LAYLAGLWHDLGKYRPGFQR-------YIRMAADAHIEGKLPQGSDKSHSAAGALWALEH 95 Query: 126 SLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASY-- 183 + + + GHH + + D K R + + Sbjct: 96 LSKQHGAEGCVA-----------ARILQYVIAGHHAGLDNWDDGLKPRLAGADTHREFTS 144 Query: 184 ---AAQDKQAREEWISVLEALFLTPAGLSINDIPPDCS----SLLAGFCSLADWL--GSW 234 A + I L +IP + L + AD+L ++ Sbjct: 145 ALDAQPPEAVLRPPIDRPAVKTLPLPFKGPEEIPGRFALWVRMLFSALV-DADFLDTEAF 203 Query: 235 TTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPR 294 T E + AL F + + L +GL + Sbjct: 204 MNPTTAQAREAETLPMCALLACFDTYMELKAETLVAAGLANTLVNRRRAEV--------- 254 Query: 295 QLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAML 354 L APG + PTG GKT LA+A V+ +P + Sbjct: 255 -LAACRTKAAEAPGTFTLTVPTGGGKTLAGLAFALTHAVHHGKRRVVMVIPYTSIIEQTA 313 Query: 355 TRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKV 414 + L ++ H N+ + ++ +SR E Sbjct: 314 QVYREVFAPL-GDEVVLEHHSNAESDERDETSRSRLACEN-------------------- 352 Query: 415 FLGQIGVCTIDQVLISVLPVKHRFIRGL-GIGRSVLIVDEVHAYDTYMNGLLEAVLKAQ- 472 + + V T Q+ S+ K R L + SVL++DE + VL+ Sbjct: 353 WDAPVIVTTSVQLFESLFARKTSRCRKLHNLAHSVLVIDEAQLLPVQYLQPVVDVLRLLV 412 Query: 473 ADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPE 532 D G +V+L +AT PM +Q+ GL RG + ++ Sbjct: 413 RDHGVTVVLCTATQPMLTEQRHFGGRGL----------------RGYQSGEVRAIIDDEA 456 Query: 533 QLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNN 592 L ++Q + L L + A V I + A+ Y RLK Sbjct: 457 GLYK--ALQRVRVHLPSDLTTPQPWDATAQALQQHDAVLTIVSRRADARDLYDRLKRELP 514 Query: 593 TQVDIDLFHAR--FTLNDRREKENRVISNFGKN------GKRNVGRILVATQVVEQSLDV 644 T L H R E + + G +V+TQ+VE +D+ Sbjct: 515 TGAR-GLHHLSALMCAQHRSEVIADIKAALVIRREALACGDAAEPVRVVSTQLVEAGVDL 573 Query: 645 DFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVR 704 DF + D + Q GR +R R V + P G Sbjct: 574 DFPVVYRALAGLDSIAQAAGRCNREGRLAMGE-----VHVFVPPKAPPAGLMRQAAQTCA 628 Query: 705 VMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAE-MDEPEWVGNGMDKFESAECEKRFK 763 ++W +++ D ++ +Y +A +D + ++ + Sbjct: 629 LVW------DDIGDTDPLALDRVSRYFAHLYGNANTLDIGDVCDALRLTVDTQAWTLPVR 682 Query: 764 ARKVLQWAEEYSLQDNDETILAVTRD 789 R AE + L DN+E + R Sbjct: 683 FRDA---AENFRLIDNEEAATVIVRY 705 >UniRef50_C6LAQ9 CRISPR-associated helicase Cas3 domain protein n=7 Tax=Clostridiales RepID=C6LAQ9_9FIRM Length = 715 Score = 235 bits (598), Expect = 8e-60, Method: Composition-based stats. Identities = 128/759 (16%), Positives = 247/759 (32%), Gaps = 152/759 (20%) Query: 42 WDQSVVLQNTFCRNEMLSKQRVKAWLLFFIAL-HDIGKFDIRFQYKSAESWLKLNPATPS 100 + + VL F + + L HDIGK+ +FQ + S +++ Sbjct: 20 LENTAVLCGKFAESFGAYD------AGYCCGLLHDIGKYSRKFQQRIRGSEQRVD----- 68 Query: 101 LNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHH 160 H AG + Q L + GHH Sbjct: 69 -------------HATAGAKVCWEKKGMYQFLSY--------------------CIAGHH 95 Query: 161 -GFILHSQDQDKSRWEMPASLASYAAQDKQAREEWIS---VLEALFLTPAGLSINDIPPD 216 G D S +D +A E I + F +I+ Sbjct: 96 AGLPDTGGSGDISTDGTMTGRMRKKLEDFEAYAEEIKIPMLGNPPFQPVKSENIDFFFSM 155 Query: 217 CSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSN 276 +L AD+L T +F+ ++ + DR + +S+ Sbjct: 156 FIRMLYSCLVDADYL----DTESFMNRKEHVREQGETIAVLCDRLEK---------HISD 202 Query: 277 KRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQI 336 E + + NG + L+ ++ GL + PTG GKT +LA+A K ++ Sbjct: 203 WLKQEDLSTV--NGRRTEILKHCMEMGEADKGLFRLTVPTGGGKTIASLAFALKHAEKHH 260 Query: 337 ADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQ 396 + VI+ +P +++ + + + N++ H N + Sbjct: 261 MERVIYVIPY----TSIIEQNAKVFAEILGRENVLENHCNIDYEL--------------- 301 Query: 397 EEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGL-GIGRSVLIVDEVH 455 + ++ Q +++ K + V T Q S+ K R L + SV+I DE Sbjct: 302 -DEELRPMQLAAENWDK----PVIVTTNVQFFESLFSNKSSRCRKLHNMANSVIIFDEAQ 356 Query: 456 AYD-TYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLI 514 Y+ + A+ + S++L +AT P L + D Sbjct: 357 MLPNDYLKPCIAAMEQLLRYYRSSIVLCTATQP-----ALKNILSEDID----------- 400 Query: 515 NWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLIC 574 + + + + R SI D ++ Q I Sbjct: 401 ----IASIELCPRMEEQFRFFKRVSIHNLERISED---------ELVHRLETEHQALCIL 447 Query: 575 NLVDVAQVCYQRLKELNNTQVDIDLFHARFT--LNDRREKENRVISNFGKNGKRNVGRIL 632 N AQ YQ++K ++H T R+ +++ K I+ Sbjct: 448 NTRKRAQKIYQQVKGKG-------VYHLSTTMYPVHRKAILDKIRERLKK----QERCIV 496 Query: 633 VATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEG 692 V+T +VE +D+DF + Q D + Q GR +R ++ + I +G Sbjct: 497 VSTSLVEAGVDLDFQTVYRQMTGVDSIIQAAGRCNREGKR----NADTCFTYIFSLEGR- 551 Query: 693 YGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDK 752 E + + T+ + + + D ++ +Y + G+ +DK Sbjct: 552 ----EDVPGQRQQTEITESLL--YDKRNPDSLDTINRYFKMLYH--------FKGDNLDK 597 Query: 753 FESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGE 791 + K+ + ++E+++ + + + +TR+GE Sbjct: 598 KRIMDKFKKSNFQFA-TVSKEFTIIEENTKTILITREGE 635 >UniRef50_B3PKI9 CRISPR-associated helicase Cas3 domain protein n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PKI9_CELJU Length = 817 Score = 235 bits (598), Expect = 9e-60, Method: Composition-based stats. Identities = 123/711 (17%), Positives = 223/711 (31%), Gaps = 105/711 (14%) Query: 58 LSKQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAA 117 + + + LHD GK+ FQ + ++NP + M K +H A Sbjct: 34 IDAESAGRLIGL---LHDFGKYSQEFQLYIKSATGEINPDEDDYV-DAKGMKGKVDHSTA 89 Query: 118 GLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHH-GFI----LHSQDQDKS 172 G Q F + + HH G I + + + Sbjct: 90 GAQLVWQR----------LKRFGNSGQGELCGQILALCIASHHSGLIDCIGVDDKPVFSN 139 Query: 173 RWEMPASLASYAAQDKQAREEWISVLEAL------------------FLTPAGLSINDIP 214 R P + A +E + L+ L F P+ + ++ Sbjct: 140 RMSKPDEKVHLDECQRTADKEILEKLDQLASVDQVKKLFNQLRRFVDFTNPSTIDFFNLG 199 Query: 215 PDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLV 274 L + AD L S + E + DR ++ L + V Sbjct: 200 FFTRFLFS-CLIDADRLNSAEFEDPIRLKERLERSGSINWKVAIDRLENHLSRLSVRNYV 258 Query: 275 SNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQ 334 R E + +N Y+ + GL + PTG GKT +L YA Sbjct: 259 DELR-REISNNCKNNAYK-------------SQGLYTLTVPTGGGKTYASLRYALHHARH 304 Query: 335 QIADSVIFALPTQATANAMLTRMEASASH-LFSSPNLILAHGNSRFNHLFQSIKSRAITE 393 + +I+ +P + + H + P ++ H N Sbjct: 305 HGLERIIYIIPYTSIIEQNAKVIREIVEHKSDTRPWVLEHHSN----------------- 347 Query: 394 QGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLG-IGRSVLIVD 452 + W S+ + + I + T+ Q+L ++ + +R L + SVL+ D Sbjct: 348 -----LEPEQQTWQSKLVSENWDAPIVLTTMVQLLETLFSGGTKGVRRLHQLANSVLVFD 402 Query: 453 EVHAYDTYMNGLLEAVLKAQAD-VGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAY 511 E+ + V+ + +L +AT P+ + K + L + Sbjct: 403 EIQTLPINCVHIFCNVMNFLVQGCNTTAVLCTATQPLLNELKCPEKGQLIVSEGNELAGD 462 Query: 512 PLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVC 571 ++ + R I + P+++ L + Sbjct: 463 FNRHFVDL----------------RRVDIYNQIKPGGWSAPEISALA--LEQFQKHGSCL 504 Query: 572 LICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRI 631 +I N AQ Y R E N D ++FH R K ++ K K + Sbjct: 505 VIVNTKAWAQELYLRCAECVN---DSEIFHLSTNQCPRHRKI--LLYLIKKRLKHRKPVL 559 Query: 632 LVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHR-KYRPAGFEIPVATILLPDG 690 ++TQ++E +DVDF +I D + Q GR +R+ K ++ PD Sbjct: 560 CLSTQLIEAGVDVDFSSVIRFLAGLDSIAQAAGRCNRNGTLKDEHGNLIKGQVFVINPDR 619 Query: 691 EGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMD 741 E G + I + ++ + E + P A +Q+ + D D Sbjct: 620 ESTGMLKDIDVGKD---KAERVLSE-EYEDMLSPAAIKQYFRYYFFDRADD 666 >UniRef50_C5CFB0 CRISPR-associated helicase Cas3 n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CFB0_KOSOT Length = 776 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 130/788 (16%), Positives = 246/788 (31%), Gaps = 143/788 (18%) Query: 26 LLIYHCLDVAAVADCWWDQ--SVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRF 83 LLI H V + + F R + +K + LHD+GK F Sbjct: 17 LLIDHL---KGVYYLMMSEIETAKKYMDFERFLGVEYSTLKLLVEAIAYLHDLGKATPEF 73 Query: 84 QYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAP 143 Q K + K H G + + + + Sbjct: 74 QKKIRKLK---------------YDKEKSLHAVLGAFAVGKYLKANLPEEKHYLIP---- 114 Query: 144 HPYESWFPWVEAVTGHHGFILHSQ-------DQDKSRWEMPASLASYAAQ---------- 186 V V HHG + + + D W++ + + + Sbjct: 115 -------LIVTLVRRHHGKAEYPEFGCDLNDEVDLLEWQVANLDSKFLNELAYKIQIPKL 167 Query: 187 DKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWL-GSWTTTNTFLFNED 245 D E+ + + F +NDI L SL DW + + Sbjct: 168 DPLELEDNVDEWQDEFQDHF-YEVNDI--QSFILYMYLSSLLDWADKTDAAFRDRPLPKR 224 Query: 246 APSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPV 305 P + + Y +VL + + Sbjct: 225 DPIPKDLVEEY--------RKVLGFDNPGRDPMNQLRNKFYHE------------ATNDT 264 Query: 306 APGLTVIEAPTGSGKTET----ALAYAWKLIDQQIADSVIFALPTQATANAMLT---RME 358 + +++ TG GKT T L KL + +I+ LP + + + Sbjct: 265 DFSIGILKGRTGIGKTLTLFSLGLKLREKLTNSDYVPRIIYCLPFLSIIDQTYEVAVELF 324 Query: 359 ASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQ 418 F + N +L H I+ +G E+ +L+ + + Sbjct: 325 EKTGRSFPTENQVLQ------QHHLSDIEYSTKEGEGYEK-------YLADLLINSWNSE 371 Query: 419 IGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGG- 477 I + T S+ K R ++ I S++++DE+ A L +LK AD GG Sbjct: 372 IIITTFVSFFHSIFTNK-RNMKFFRIPGSIVLLDEIQAIPPKYWELTGKILKLLADYGGT 430 Query: 478 SVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPR 537 + +AT+P K G H + G RFDL E + Sbjct: 431 KFVFSTATMP-----KCFGISGKHL-------------YTGEIPLDRFDLHYIGEVTFEK 472 Query: 538 FSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDI 597 F ++ + E + A + + ++ N + A+ + + E + + + Sbjct: 473 F-------------KEIFLREVVEKARDESKGLMVVLNTIGCAKAVLEEISEFVDKKY-L 518 Query: 598 DLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPAD 657 + R+ + ++ + G R+LV TQ+VE +D+DFD+ I P D Sbjct: 519 YYLSSEVPPIVRKNRIEKLKNLKG-------FRVLVTTQLVEAGVDLDFDYCIRDIGPLD 571 Query: 658 LLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELN 717 + Q GR++R +RK + V + + + G IY +V +++ +++ + + Sbjct: 572 SVVQVAGRVNRSNRKKKGQ-----VILVDIKEFMGKRDPSKIYDSV-LLFASRKVLSNND 625 Query: 718 GASLFFPDAYRQWLDSIYDDAEMDE-PEWVGNGMDKFESAECEKRFKARKVLQWAEEYSL 776 S ++ + E E + E K + + + + Sbjct: 626 NYS---ESMLYNLVEIYLAEIETKGFEEESRMILKNIYKLEFSKINEFKLIEERPTNPVF 682 Query: 777 QDNDETIL 784 + DE Sbjct: 683 IELDENAK 690 >UniRef50_A7AL54 Putative uncharacterized protein n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7AL54_9PORP Length = 750 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 128/723 (17%), Positives = 239/723 (33%), Gaps = 114/723 (15%) Query: 73 LHDIGKFDI-RFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQS 131 HD+GK+ FQ + S ++ K +H +AG L+ + Sbjct: 62 WHDMGKYTKNSFQPYIRNA---------SGMAVEQKVVDKPDHSSAGA------ILAREK 106 Query: 132 LGDFFSFFDAAPHPYESWFPWVEAVTGHH-GFILHSQDQDKSRWEMPASLASYAAQDKQA 190 L ++ P + GHH G + + + + + Y K A Sbjct: 107 LPGYYP-------------PLAYCIAGHHSGLLDWTSSGEANLNRRLSKTDCYQEMLKDA 153 Query: 191 REEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDI 250 EE V+ +L DI L + AD+L T F+ E A Sbjct: 154 PEEMQEVVASLDQPLIDDFEKDIHQWIRMLFS-CLVDADYL----DTERFMHPEQAA--- 205 Query: 251 NALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLT 310 + Q D+ L+ V + A N + L PG Sbjct: 206 -------RRGQYDSMETLKDRFDVYMESLTANAPASFINEKRAAILSRCRKMAESLPGFF 258 Query: 311 VIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNL 370 + PTG GKT ++A+A + +I +P +++ + A +F + N+ Sbjct: 259 SLTVPTGGGKTLASMAWALLHAVRYKKKRIIIVIPY----TSIIVQTAAVLRDIFGAENV 314 Query: 371 ILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLIS 430 + H N + + + S TE + I V T Q S Sbjct: 315 VEHHSNLQQDSNDERSPSLLATEN--------------------WDAPIIVTTNVQFFES 354 Query: 431 VLPVKHRFIRGL-GIGRSVLIVDEVHAYDT-YMNGLLEAVLKAQADVGGSVILLSATLPM 488 + + R L I SV+I+DE +++ +L+ + QA S++ +ATLP+ Sbjct: 355 LYACRTSRCRKLHNICNSVVILDEAQMLPVEFLHPILDVLQSLQASFKASILFTTATLPV 414 Query: 489 KQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLA 548 + + T P + + F+ E P EP Sbjct: 415 F-------SGRIGTGPGAFDGLKTPVTEITSVHDNLFEAFKRVELHWP------EPGTTT 461 Query: 549 DMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLND 608 + + + + V I N A+ Y+R+ + L +R Sbjct: 462 NF-------DELADELSGYDCVLCIVNTRKDARELYRRM-------PEGTLHLSRMMC-- 505 Query: 609 RREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHR 668 VI + K N +++TQ+VE +D+DF + D + Q GR +R Sbjct: 506 -SAHIMEVIKLIKQKLKDNEPVRVISTQLVEAGVDIDFPVVYRAFAGLDSIIQAAGRCNR 564 Query: 669 HHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYR 728 + + + + + E + + ++ + +G+ LF P+ Sbjct: 565 EGKLNH----VGKLGQVFVFNLENTLLRGLMGKGAAAL---REILSVSDGSDLFSPECMA 617 Query: 729 QWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTR 788 Q+ Y + + + + K + A AE++ L D+ +++ + Sbjct: 618 QYFSLFYSNCNTFDKANIKGLLYKGFAEMHFMFATA------AEKFRLIDDKDSVSILVG 671 Query: 789 DGE 791 G+ Sbjct: 672 YGD 674 >UniRef50_C5A6D4 CRISPR-associated helicase Cas3, core n=1 Tax=Thermococcus gammatolerans EJ3 RepID=C5A6D4_THEGJ Length = 667 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 104/459 (22%), Positives = 172/459 (37%), Gaps = 82/459 (17%) Query: 274 VSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLID 333 +S + + + YQ R + + A+ G VIE PT GKTE A+ Sbjct: 6 LSAEELFRRITGHEPYDYQLRAWEKIDTAMSNG-GKVVIEVPTAGGKTEAAIVPFLVEAY 64 Query: 334 QQ--IADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAI 391 +I+ALPT++ R+ ++ G S Sbjct: 65 NGTWAVSRLIYALPTRSLVEKQAERIRKLLVK------VLELKGKS-------------- 104 Query: 392 TEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLP----VKHRFIRGLGIGRS 447 + +E A FLG + V T D L + + I +S Sbjct: 105 EREAKELAERLVIVEYGLEPTHAFLGWVVVTTWDAFLYGLAAHRTVGRRFTFPAGAIAQS 164 Query: 448 VLIVDEVHAYDT---YMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDP 504 +++ DEV Y YM LL V+K + V+++SAT+P + ++ + Sbjct: 165 LVVFDEVQMYQDESLYMPRLLSLVVKQLSKANVPVVVMSATIPSELRKMI---------- 214 Query: 505 VENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAA 564 S P I + ++ + + S+Q + +L D + A Sbjct: 215 ----SGEPEIVMVRSDDGKKPE--------RGKVSVQVVEGTIESVLDD------IKKAL 256 Query: 565 NAGAQVCLICNLVDVAQVCYQRLKELNNT-QVDIDLFHARFTLNDRREKENRVISNFGKN 623 +V ++ N VD A Y LK + V+ L H RF + DR++KE + Sbjct: 257 KRKERVLIVRNTVDRAVSTYLTLKPVAEELGVEALLIHGRFAVEDRKKKERAL------- 309 Query: 624 GKRNVGRILVATQVVEQSLDV-DFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPV 682 + +++VATQVVE LD+ + ++T P D L QR+GR R + A Sbjct: 310 ---DGAQLIVATQVVEAGLDLLNVGLVVTDIAPLDALIQRIGRCARRKGEKGKA------ 360 Query: 683 ATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASL 721 I+L + + G I S ++ IEE GA + Sbjct: 361 --IVLVETQDIGSFPKIKS----FSEARRIIEERIGAKI 393 >UniRef50_B8DQ50 CRISPR-associated helicase Cas3 n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DQ50_DESVM Length = 740 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 133/661 (20%), Positives = 209/661 (31%), Gaps = 106/661 (16%) Query: 17 SLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDI 76 + +D L H +VA L F + + A L LHD+ Sbjct: 8 ANRPESDWEPLSRHLEEVAD-----------LAAHFASAFGAGEWGLAAGL-----LHDV 51 Query: 77 GKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFF 136 GK FQ S P R +H AG W + LG Sbjct: 52 GKQSTAFQAYLRASTAGKGP------------GRGPDHSTAGAQWAHGHY--NAKLGKLL 97 Query: 137 SFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWIS 196 ++ A+ GHH + + R + D AR + Sbjct: 98 AY----------------ALAGHHAGLPDGIESLAPRLKRAVEPWHSPGDDIAAR---VP 138 Query: 197 VLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTY 256 + L L S+ ++ AD T F + A L Sbjct: 139 EITGLPLAGRMPSLGFQLMLFVRMVFSCLVDAD----SLCTEAFTTPDKAAWRRGYLP-- 192 Query: 257 FQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPT 316 + + R L+ + + A + L +A P PGL + PT Sbjct: 193 LSELKVRLDRHLDHLATHAPATPVNSLRAGI--------LAACRNAAPNVPGLFSLTVPT 244 Query: 317 GSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGN 376 G GKT ++LA+A VI+A+P + + + + +L H + Sbjct: 245 GGGKTLSSLAFALDHAQAHGLRRVIYAIPYTSIIEQTARVFREALND--TDDQAVLEHHS 302 Query: 377 SRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKH 436 + E ++A L+ N + + V T Q L S+ + Sbjct: 303 NFVPLRADGTPVTPRREGQDDDAGEGRRSVLAAEN---WDAPVVVTTNVQFLESLFAARR 359 Query: 437 RFIRGL-GIGRSVLIVDEVHAYDTY-MNGLLEAVLKAQADVGGSVILLSATLPMKQKQKL 494 R L I RSV+I+DE + LEA+ D G SV+L +AT P K++ Sbjct: 360 SPCRKLHNIARSVVILDEAQMLPPEHLLPCLEALRALVLDYGCSVVLCTATQPALGKREG 419 Query: 495 LDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDL 554 D Q ++ +PEQL +++ + A L D Sbjct: 420 FDR----------------------GLEQVREITPNPEQLAT--ALRRVEVTDAGTLDDA 455 Query: 555 TMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKEN 614 + R+ QV + N A+ Y+ L Q D A R Sbjct: 456 QLAARLAGQP----QVLCVVNTRPHARALYELLA----PQGDAVHLSAAMCPAHR----T 503 Query: 615 RVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYR 674 V+ + + +VATQ+VE +D+DF + D L Q GR +R R Sbjct: 504 EVLRGVRQRLLQGQPCRVVATQLVEAGVDIDFPVVYRAMAGVDSLAQAAGRCNREGNLER 563 Query: 675 P 675 Sbjct: 564 G 564 >UniRef50_B5JKF7 CRISPR-associated helicase Cas3 domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JKF7_9BACT Length = 790 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 145/804 (18%), Positives = 262/804 (32%), Gaps = 136/804 (16%) Query: 5 KYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCW-WDQSVVLQNTFCRN---EMLSK 60 +Y YW K + LD A +C D+ L F E Sbjct: 26 EYAAEYWEKLFTDCQNRD------CSGLD-ACCGECGHLDKVARLTAKFSEEMFPEGSDD 78 Query: 61 QRVKAWLLFFIAL-HDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGL 119 +V +F L HD+GKF +Q + + K +H AG Sbjct: 79 AKVAREWGWFAGLWHDLGKFAPDWQE---------YLKKKVSDAHRDECIGKVDHSTAGA 129 Query: 120 YWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHH-GFILHSQDQDKSRWEMPA 178 W A + A+ GHH G + + Sbjct: 130 QW-------------------AVARSAMVGHLFAYAIAGHHSGLADSESESACLSKRLKK 170 Query: 179 SLASYAA-QDKQAREEWISVLEALFLTPAGLSINDIPPDCSS---LLAGFCSLADWLGSW 234 S+AS A D R E + A+ + + P + +L AD+L Sbjct: 171 SVASLGAVPDAITRLEVPKLPPAVQRRFRDCLLPNASPAFALYSRMLFSCLVDADFLA-- 228 Query: 235 TTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPR 294 T +F+ A A + + Q ++ +E G+ ++ Sbjct: 229 --TESFMNPGQAKDRSKAPSSLIERMDQILTQHVEDFGVPNSSVNQARSAVY-------- 278 Query: 295 QLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATAN--- 351 Q ++A GL + PTG GKT ++LA+A + + VI+ +P + Sbjct: 279 --QQCLEAAENPVGLFTLTVPTGGGKTLSSLAFALRHAIRHRQRRVIYVIPFTSIIEQNA 336 Query: 352 AMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSN 411 + + + S P ++ H N + ++I++R +E Sbjct: 337 QVFAEVFDALSKELGIPIVLEHHSN--LSPESETIQTRLASEN----------------- 377 Query: 412 KKVFLGQIGVCTIDQVLISVLPVKHRFIRGL-GIGRSVLIVDEVHAYD-TYMNGLLEAVL 469 + I V T Q S+ + R L I SV+I+DE Y++ L+ + Sbjct: 378 ---WDAPIIVTTAVQFYESLHAARTSSCRKLHNIANSVVILDEAQCLPRDYLHPCLDVLQ 434 Query: 470 KAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLA 529 + A SV+L +AT P +K +T+ + D + P + + + Q + Sbjct: 435 QLAAIYHTSVVLCTATQPAIKKS---ETFPIGIDGAFEIISDPQLLFENLRRVQVINRGP 491 Query: 530 HPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKE 589 + + R NA Q I N A+ + RL Sbjct: 492 LEDGVIAR-------------------------EMNAEPQCLAIVNTRRHARELFNRLA- 525 Query: 590 LNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWL 649 ++ + R+E LV+TQ++E +DVDF + Sbjct: 526 ---SEGEAYHLSTLMCPLHRKEILREARELL----VVKKPVRLVSTQLIEAGVDVDFPRV 578 Query: 650 ITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRT 709 D + Q GR +R+ + + + + + + +NV T Sbjct: 579 YRSMAGIDSIGQAAGRCNRNGKLE-----SLGETHLFASEHQRSEAYFRETTNV-----T 628 Query: 710 QQHIEELNGASLFFPDAYRQWLDSIYDD-AEMDEPEWV-GNGMDKFESAECEKRFKARKV 767 Q + LN L + Q+ Y + + W ++ + + + Sbjct: 629 SQVLA-LNEDPLSL-ASVEQFFHLYYHEHRPANGKRWDSKEILEDYRLNQNRSLPFGFQF 686 Query: 768 LQWAEEYSLQDNDETILAVTRDGE 791 + A+++ L +ND+T + + DGE Sbjct: 687 REVAKKFQLIENDQTSIVIHYDGE 710 >UniRef50_A9WBB7 CRISPR-associated helicase Cas3 n=3 Tax=Chloroflexus RepID=A9WBB7_CHLAA Length = 801 Score = 233 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 105/521 (20%), Positives = 181/521 (34%), Gaps = 91/521 (17%) Query: 291 YQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETAL-AYAWKLIDQ--QIADSVIFALPTQ 347 Q Q V + +A V++APTG+GKT AL + D+ ++ P + Sbjct: 1 MQLYPYQQRVKDIILAGENVVLQAPTGAGKTRAALVPFIEGFFDRPDTTPRKCLYVTPMR 60 Query: 348 ATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWL 407 AN A+ HG Q Sbjct: 61 VLANQFYAEYRELAARYQR------LHGR----------------------QLDVRIQTG 92 Query: 408 SQSNKKVFLGQIGVCTIDQVLISVL------PVKHRFIRGLGIGRSVLIVDEVHAYDTYM 461 Q + F G + CT+DQ L S L P + + + + L+ DE H +D Sbjct: 93 EQPEDRRFEGDLIFCTVDQFLSSYLMMPYSLPYRLANVNAGALAGAYLVFDEFHLFDPD- 151 Query: 462 NGLLEAVLKAQADVGG--SVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGV 519 L +L + G +L++AT Q L + + IN RG Sbjct: 152 -AALPTILHVLRQLHGLAPFMLMTATFSSAMLQSLATLLQPAQVVTLSAAEIAAINTRGG 210 Query: 520 NGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDV 579 A++ + D + + A + A +ICN V Sbjct: 211 QPARQ----------------------RVWQVADQPLQAAAVLAHHQHAS-LVICNTVRR 247 Query: 580 AQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVG-RILVATQVV 638 A+ Y LK+ + ++ L H++F +DRR+ E ++ S G + +R I+VATQVV Sbjct: 248 AREVYAELKQQAPPETEVLLLHSQFLPDDRRQIEAKLRSRLGVSSQRQQANLIVVATQVV 307 Query: 639 EQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEH 698 E +D+ + L T+ P L QR GR R+ T+++ E Y + Sbjct: 308 EVGVDISVEVLHTELAPPASLIQRAGRCARYPGD---------TGTVIVYPVETYVPYAF 358 Query: 699 IYSN--VRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESA 756 M T ++E GA +F D ++ ++++ + Sbjct: 359 KPDEILKHEMDATLAWLKERQGA-VFDFDHEQELVNAV----------SAARDQNIIAGI 407 Query: 757 ECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLL 797 + ++ + + E + + RD + L L+ Sbjct: 408 QADRHNRRASIQGCLEGQRAGAS----RLLVRDVDSRLVLI 444 >UniRef50_C6J187 Metal dependent phosphohydrolase n=3 Tax=Bacillales RepID=C6J187_9BACL Length = 805 Score = 233 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 122/761 (16%), Positives = 233/761 (30%), Gaps = 117/761 (15%) Query: 15 SKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIAL- 73 + + +I L H L V L F L + L Sbjct: 4 AHVRERDKEIQPLKAHLLGV-----------QRLAEQFGAKLGL------KHVAGLAGLL 46 Query: 74 HDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLG 133 HD+GK+ +FQ ++ P + + A G F+ E + Sbjct: 47 HDLGKYSDKFQ-------EYIDVVAFHPEWPQPKRGEVDHSTAGGRLLFSLLHHKESTFL 99 Query: 134 DFFSFFDAAPHPYESWFPWVEAVTGHH----GFILHSQDQDKSRWEMPASLASYAA---- 185 + A+ HH ++ D R L Y Sbjct: 100 EKLL-----------AEIVGNAIISHHSNLQDYLSPEIKSDYLRRVHDTDLPEYDLAVER 148 Query: 186 --QDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLA----GFCSLADWLGSWTTTNT 239 QD + EE I ++A D P S + AD T+T Sbjct: 149 FFQDTMSEEELIRYIQAAVNELEQFW--DRTPAQSFFVTKYIFSCLIDAD------RTDT 200 Query: 240 FLFNEDAP-----SDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPR 294 F E + TY++ +++ + S Sbjct: 201 RCFEEQVEVAESNQHLQLFETYYRRLMNHLTKLKDKSNASEPINVLRAK----------M 250 Query: 295 QLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAML 354 Q V A G+ + PTG GKT +L YA + + +I+ +P Sbjct: 251 SEQCDVFAAERPSGIYTLSIPTGGGKTLASLRYALRHACKYEKQRIIYVVPFTTIIEQNA 310 Query: 355 TRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKV 414 + + +++ H N + + + E + + + + + + Sbjct: 311 DEVRKILQD---NEHILEHHSNVI------EEEQKDMEEGDEADDGLITDKEKLRLARDN 361 Query: 415 FLGQIGVCTIDQVLISVLPVKHRFIRGL-GIGRSVLIVDEVHAYDTYMNGLLEAVLKAQA 473 + I T+ Q L +R R L + SV++ DEV + L L Sbjct: 362 WDSPIIFTTLVQFLNVFYAKGNRNTRRLHNLSHSVIVFDEVQKVPIHCISLFNEALNFLK 421 Query: 474 -DVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPE 532 D S++L +AT P N + L+ R +++++ Sbjct: 422 QDAHCSILLCTATQPT-----------------LENVKHSLLKERDG------EIVSNLT 458 Query: 533 QLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNN 592 ++ F + + + T+ + + + N +I N V + Y++LK+ Sbjct: 459 EVAKAFKRVELIDRTEEPMTNETLADWVKSEINGWGSTLIILNTKKVVKDLYEKLKD--- 515 Query: 593 TQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQ 652 + + R+++ + + V I V TQ++E +DV F +I Sbjct: 516 AAMPVYHLSTSMCAAHRKDQLKEIRDML----DQQVPFICVTTQLIEAGVDVSFKCVIRS 571 Query: 653 HCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQH 712 D + Q GR +RH + I A + + + + + V+ R + Sbjct: 572 LAGLDSIAQAAGRCNRHGEDESQNVYIINHAEEAVSKLKEIKVGKEM--SSHVLAR-FKK 628 Query: 713 IEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKF 753 + +L P A ++ Y+ E + +V + Sbjct: 629 KADQYEGNLLLPKAMSEYFRYYYNRMEANLNYYVKKLDKEM 669 >UniRef50_B1L410 CRISPR-associated helicase Cas3 n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L410_KORCO Length = 564 Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats. Identities = 110/562 (19%), Positives = 211/562 (37%), Gaps = 52/562 (9%) Query: 290 GYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQAT 349 G + R +++IEAPTG GK+ + A A + +++ + + A P + Sbjct: 17 GREDRPFLNFAIKKAEDSRVSIIEAPTGYGKSAISQAIALRSLEEGL--KCVIAFPLRTL 74 Query: 350 ANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQ 409 L + + L + G ++ R IT + + + Sbjct: 75 LEDQLAKFRGTLRKLDLDERYV---GARYMHYPESRYLIRPITLTTADTLSLTLFGIAPE 131 Query: 410 SNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGL--LEA 467 + F G T + H + S L++DEVH L L A Sbjct: 132 DLETAFKHYDGTLTG--------SMGHYLFSRAMVLLSDLVLDEVHLLSDTTKSLNFLIA 183 Query: 468 VLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDL 527 ++ GG +SAT+P + L I + + ++ D Sbjct: 184 LIWIVTFHGGRATFMSATIPKALENLL-------------RRECEGIGLKIIRFSEDPDN 230 Query: 528 LAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRL 587 E+ R+ + E + +D ++ + I + + ++ N V+ A Y+ + Sbjct: 231 AFLEERRKKRYEVNLEKLG-SDKFERISEWIK-IGMRDGFRRAIVVFNTVNEAIEFYRFV 288 Query: 588 KE-LNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDF 646 +E L+ + I L H+RF+ DR K R+ RN +LV+TQV+E +D+ Sbjct: 289 RENLDLRKDRILLLHSRFSGKDREAKMRRIEEL------RNEEYLLVSTQVIEAGVDISS 342 Query: 647 DWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVM 706 D ++ PA L QRLGR R+ G + A + +G+G +++ +Y ++ + Sbjct: 343 DLFVSDLAPASSLIQRLGRFLRYG------GEQEGRAFLWYEEGDG-EKYKGVY-DIDLF 394 Query: 707 WRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARK 766 RT +E N P++Y+ LDS+YD++ + +++ S E R Sbjct: 395 ERTLYFLEG-NDVRFHDPESYQALLDSVYDESSFNLKP---RDVNELISIESILESSYRA 450 Query: 767 VLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEAL 826 + ++ E D T++ V G + +P + ++ + ++ Sbjct: 451 IEKFIELEGSFVRDSTLVPVV-PGSLWREDMPISELRELLVPMNLSTVYQIKPKEMLIIE 509 Query: 827 ALNRVNVPFT--WKRSFSEVVD 846 + P W R V+ Sbjct: 510 EGKVIKKPTETLWNRKREHVLK 531 >UniRef50_D2Q5M0 CRISPR-associated helicase Cas3 n=6 Tax=Bifidobacterium RepID=D2Q5M0_9BIFI Length = 847 Score = 232 bits (591), Expect = 5e-59, Method: Composition-based stats. Identities = 121/715 (16%), Positives = 231/715 (32%), Gaps = 87/715 (12%) Query: 34 VAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLK 93 AV D + R+ ++ A LHD+GK FQ Sbjct: 40 TGAV-QTLRDH-LHGAGKLARDF---EEEFSAISYTAALLHDLGKASEDFQEYL------ 88 Query: 94 LNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWV 153 + K + G+ W + + + Sbjct: 89 --------------LSAKGHRGSVIHAWQGAFLVDDACALSSEKSAAEQAVQEITREILE 134 Query: 154 EAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGL---SI 210 A+ HHG + D D + + + +E + L L AG SI Sbjct: 135 LAIAKHHGELPDCLDVDGFSTFFDGLATDRKNEIRFSYQEVKDRISYLDLDIAGNYDKSI 194 Query: 211 NDIPPDCSSLLAGFCSLADWLGSWTTTNTFL------FNEDAPSDINALRT-YFQDRQQD 263 D+ G + + + F + D + L F++R+ Sbjct: 195 RDVEHFMQKFNMGGIT-------NSDSFYFYLGLFAKYVYSRLIDADRLDAACFEERRTY 247 Query: 264 ASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDAL-----PVAPGLTVIEAPTGS 318 S+ ++ S L+ +E D+ + +++ + + G+ + PTG Sbjct: 248 RSKSIDWSSLIDR---FEKNIRKFDHTSEINKIRNQISEQCRLEGKRSTGIYRLAVPTGG 304 Query: 319 GKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSR 378 GKT +L +A + +I+ +P + + + +L H +S Sbjct: 305 GKTLASLNFALHHAIETNKRRIIYVIPYLSITSQTVKVFREILELDEDDTETLLEHYSSA 364 Query: 379 FNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRF 438 + +E QEE Q + + + + QI V T+ + L +V+ K Sbjct: 365 GGRKDDDTFTNTQSEFDQEEDDEQNAKRKLATER--WDSQIIVTTMVRFLETVMSSKSGD 422 Query: 439 IRGL-GIGRSVLIVDEVHAYDTYMNGLLEAVLKAQAD-VGGSVILLSATLPMKQKQKLLD 496 +R + S++I DE+ + T L V+ + +G +++L SAT P+ ++ + Sbjct: 423 LRRFHNMADSIIIFDEIQSLPTNAINLFNEVVSFLSKILGSTIVLCSATQPLLERTSRKN 482 Query: 497 TYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTM 556 + + D + E+L + + D L ++ Sbjct: 483 LLLADCPNLID------------------DSQEYFEKLRRTCVVAATEMKNCDELAEI-- 522 Query: 557 LERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQ-VDIDLFHARFTLNDRREKENR 615 + A I NL A++ YQ LK LN I R +K Sbjct: 523 ---IYEKAKENGNCLAIVNLKSEARIIYQCLKTLNGDNHFKIIHLSTSMCGQHRTDKLEL 579 Query: 616 VISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRP 675 V + + I ++TQ++E +DV F +I D + Q GR +R+ P Sbjct: 580 VRQL--TSIDKGKPVICISTQLIEAGVDVSFSCVIRAMAGLDSILQAAGRCNRNGESKSP 637 Query: 676 AGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQW 730 V + D +G I + T++ + E L + ++ Sbjct: 638 K----KVYVFGIKDEKGLSYLPDIKMGKEI---TERMVREHPDEDLLSNEMLLEY 685 >UniRef50_B0TFM5 Crispr-associated helicase cas3, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TFM5_HELMI Length = 837 Score = 232 bits (591), Expect = 5e-59, Method: Composition-based stats. Identities = 113/613 (18%), Positives = 219/613 (35%), Gaps = 92/613 (15%) Query: 289 NGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQ--IADSVIFALPT 346 G +P Q V + ++ APTGSGKT AL + + AD +I+A+P Sbjct: 13 TGKKPYGFQTQVAREVLEQERVILRAPTGSGKTWAALLPFLYAKENRTPWADRLIYAVPL 72 Query: 347 QATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQW 406 + + + ++ F + Q Sbjct: 73 RTLGKNLYSTIKKRLDDQFPGKYRV-------------------------------TMQT 101 Query: 407 LSQSNKKVFLGQIGVCTIDQVLISVL------PVKHRFIRGLGIGRSVLIVDEVHAYDTY 460 + +F G I +CT+DQ+L + + + + + + +++DE H Sbjct: 102 GDVPDDPLFEGDIILCTVDQLLSAYILHPYAVGPRRANVVAGALSGAYVVIDETHLLTP- 160 Query: 461 MNGLLEAVLKAQADVGG--SVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRG 518 L + G + + ++AT+P ++ T V Sbjct: 161 -RESLATAVDMVRRYQGLMTALFMTATMPDTVMDEVARRCKAKTITVTE----------- 208 Query: 519 VNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVD 578 ++ + Q+ P I I L+ P+ + E ++ ++CN VD Sbjct: 209 ----EQMESDPQSRQVKPERRIHRMTIPLS---PEAVLSEHRTSS-------LVVCNTVD 254 Query: 579 VAQVCYQRLKELNNT---QVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVAT 635 A YQ LK++ + + L H+RF DR E R+ FG + R I+++T Sbjct: 255 RAVRFYQTLKKMLGENKSDIPLFLLHSRFLPEDRARLERRITEQFGPD--RTGRGIIIST 312 Query: 636 QVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGR 695 QV+E +D+ D L T+ PA+ + QR GR+ R+ G + DG+ R Sbjct: 313 QVLEAGVDISADVLHTELAPANAIVQRSGRVARYG------GLGSIFVYDITEDGK---R 363 Query: 696 HEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFES 755 + Y V + ++N +S R+ +D+ +D E + + +G + Sbjct: 364 NYAPYFGVSIAANASSATNDINASS--DEAEARRIMDATWDSLEKWDGKVIGFTQELAWV 421 Query: 756 AECEKRFKARKVLQWAEEYSLQDNDETILAVT----RDGEMSLPLLPYVQTSSGKQLLDG 811 E + R + E + D + + + + RD + + + L Sbjct: 422 NEIHAAVEQRALRSRTERKVIDDVNAAMRSQSSHFLRDLVRNAASINLLVHPDPNTLDMR 481 Query: 812 QVYEDLS-HEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLD---GWVWQGN 867 + S H + + + F + + D ++W+E K D + + + Sbjct: 482 RQPPLFSLHPGVFRRIVRRVLRGEQDGAMWFMDFRENDEIIWMEIKNEKDLDGRYFFAVS 541 Query: 868 SIVITYTGDEGMT 880 + Y + G+T Sbjct: 542 PQLAAYHPEIGLT 554 Score = 52.1 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 44/253 (17%), Positives = 80/253 (31%), Gaps = 44/253 (17%) Query: 26 LLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFF-IALHDIGKFDIRFQ 84 LL H VA + ++ + L +++ + A HD GK +++Q Sbjct: 581 LLSDHLQAVAGECEQQGKRNQAAVARWAELLCLRTDTIES-FSWLGAAGHDAGKASLQWQ 639 Query: 85 -----------YKSAESWLKLNPATPS--LNGPSTQMCRKFNHGAAGLYWFNQDSLSEQS 131 K E L P + + RK +H A G Y+ L + Sbjct: 640 TWARNYQFVLTGKVEEECLAHTDYDPENPRVKEAEKSKRKPSHAAEGAYYLFDRLLQPVA 699 Query: 132 LGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAR 191 G D P + A+ HHG + ++ MP ++A++ ++ + Sbjct: 700 DG---LIPDDLPKAEIIARSVMTAIARHHGPHVKELNRQIEFCGMPDAVANWLSEQVKTM 756 Query: 192 EEWISVLEALFLTPA-----------------GLSINDIPPDCSSLLAGF--------CS 226 ++LE + L A +N+ + LA Sbjct: 757 PVDTAILENIGLQSAWKSESSFDRNRFAKLLVDPKLNECGNNVLKELAWLFYLYLVRRLR 816 Query: 227 LADWLGSWTTTNT 239 +ADW S + Sbjct: 817 MADW-ASMERAHP 828 >UniRef50_C2MA87 CRISPR-associated helicase Cas3 domain protein n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2MA87_9PORP Length = 772 Score = 232 bits (591), Expect = 6e-59, Method: Composition-based stats. Identities = 117/782 (14%), Positives = 236/782 (30%), Gaps = 130/782 (16%) Query: 26 LLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIAL-HDIGKFDIRFQ 84 L+ H VA +A + L + + + + L HD+GK+ FQ Sbjct: 22 PLLDHLHGVAELAQSY-------AERITDYPELGE------IGYLLGLLHDLGKYQEGFQ 68 Query: 85 YKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPH 144 + L+P P H AG + A Sbjct: 69 RYIRQQ-SGLDPTLNGWRTP---------HSPAGARYAYD--------------LKQAGG 104 Query: 145 PYESWFPWVEAVTGHH----------GFILHSQDQDKSRWEMPASLASYAAQDKQAREEW 194 + + HH G ++ S D ++ + L A Q ++ + Sbjct: 105 SQQLLKILSLCIGAHHRGLYNDSEWRGQVVSSSDTKRAVANLVKGLRPEALQLEELLHK- 163 Query: 195 ISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALR 254 + L+ + L D L + AD+L + D + + Sbjct: 164 -ASLDKVATMWDKLDEEDYQLLVRMLFS-CLVDADFL-----DTERFMSPDKSLVRQSAK 216 Query: 255 TYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEA 314 + + + S R E A LD Q + + Sbjct: 217 ASLEQMRAQLEEYV--SHFNREGRINEARAAFLD--------QCRNHGRTAKRKIYSLTL 266 Query: 315 PTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAH 374 PTG+GKT +++ +A + Q + +I+ +P + + +F + ++ H Sbjct: 267 PTGAGKTVSSMMWALEHAIAQGCERIIYVIPYTSIITQ----TAQTFRDIFGADQVLEHH 322 Query: 375 GNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPV 434 + + ++ ++ E + W + V T Q S+ Sbjct: 323 SD---------VDAKERPDEALEYTKLMTENWDV---------PLVVTTNVQFFESLYAH 364 Query: 435 KHRFIRGL-GIGRSVLIVDEVHAYDTYMNGLLEAVLKAQAD-VGGSVILLSATLPMKQKQ 492 + R L I SV++ DEV + + + V+++ + +ATLP+ K Sbjct: 365 RVSRCRKLHNICNSVVVFDEVQMFPPRLLNPILRVVESLHYTFRVEPLFCTATLPVFDKD 424 Query: 493 KLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLP 552 L D G + F L +++ P + + P Sbjct: 425 ILAD--------------------SKRIGHEFFFLEERIQEVVPYDAERFAPFDKVRYHW 464 Query: 553 DLTML--ERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRR 610 D L E + I N A Y L+ + + + R + Sbjct: 465 DPLRLSTEELAERLGEHESFLCIVNSRKDAARLYAALQAQDKSGEGLIHLSRRMCSAHIQ 524 Query: 611 EKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHH 670 ++ + +V+T +VE +D+DF + D + Q GR +R Sbjct: 525 KRIEEIRHRLKAGEPVR----VVSTPLVEAGVDLDFPVVYRAMAGLDSVMQAAGRCNREG 580 Query: 671 RKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQW 730 R P I T DG E ++ + + ++ L ++ Sbjct: 581 RMAEPGEVYIFRLT----DGTDIP-GEMSWAQGAL----EDLLDRLTEQGAPQKAEIERY 631 Query: 731 LDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQW-----AEEYSLQDNDETILA 785 + Y+D + + + + + + L++ +E + +N +T + Sbjct: 632 YQAFYNDVDCFDNKKTKEKDKRVSPLLWDVDDDRCEGLRFEYETASENFRYIENQDTPIV 691 Query: 786 VT 787 + Sbjct: 692 IP 693 >UniRef50_UPI0000F51713 CRISPR-associated helicase Cas3 n=1 Tax=Ferroplasma acidarmanus fer1 RepID=UPI0000F51713 Length = 803 Score = 231 bits (590), Expect = 7e-59, Method: Composition-based stats. Identities = 104/599 (17%), Positives = 210/599 (35%), Gaps = 98/599 (16%) Query: 300 VDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIAD-----SVIFALPTQATANAML 354 V + + I +PTG+GKT + L A+ + ++ + +I+ LP + Sbjct: 280 VQNIDLNDHFFTITSPTGTGKTISGLYTAFSIRNKLFKNTGNIFRIIYTLPFTTIVDQNY 339 Query: 355 T----RMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQS 410 +E + + I+ H +HL E +E + W S+ Sbjct: 340 DTGRNILETCSGFKNNDERYIIKH-----HHLSILSGKIDDEELSADEVLMLTEDWDSE- 393 Query: 411 NKKVFLGQIGVCTIDQVLISVLPVKHRFIRGL-GIGRSVLIVDEVHAYDTYMNGLLEAVL 469 I T Q+ ++ K++ ++ I S++I+DE+ A D + ++ Sbjct: 394 --------IIFTTFVQLFSALAGYKNKNLKKYYRIINSIVILDEIQAIDIAKWPQIRYLM 445 Query: 470 KA-QADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLL 528 IL+SATLP + G + +RF+ L Sbjct: 446 NYYAKKFNIYFILMSATLPELVNNSI---------------------ELGGDYQKRFEEL 484 Query: 529 AHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLK 588 + L + P + + M + A + N ++ + + LK Sbjct: 485 NR---------VNMHINILERLTPKEIVKKYMYHSETAK---LFVFNTINTSIEAFNYLK 532 Query: 589 ELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDW 648 E + V+ + K+ VI N K+ K N I+VATQ+ E +D+ FD Sbjct: 533 ENVSNDVNTYYLSSNIVPI----KKKDVIDNINKDIKNNKKIIVVATQIFEAGVDISFDM 588 Query: 649 LITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRH--EHIYSNVRVM 706 +I P D L Q GR++R+ R + + +P+ GY + +Y + Sbjct: 589 VIRDIAPIDSLIQSSGRVNRNSFNTRGNMYIVNC----VPEKNGYDGYYCRQVYGKIH-- 642 Query: 707 WRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMD---EPEWVGNGMDKFESAECEKRFK 763 T I+ L+ + Y + + Y++ + E + N ++K + K Sbjct: 643 --TDTTIKILSDRKIVEEKDYLKLIKHYYNEINQNLIGSSENLQNALNKLDFN-----SK 695 Query: 764 ARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQY 823 R + +S+ D+ + ++ + S+ +++D + Sbjct: 696 NRDEHYYVSNFSMIDDMDKYIS-----------IFVELDSNAMRIIDTYINRKSYE---- 740 Query: 824 EALALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMTRV 882 + + + ED K D ++ + N + +Y+ D G+ + Sbjct: 741 ---RADIIQLKREMYNYIISARIEDIKNITCEKLYSDFYIIRNNYLENSYSNDTGLKKA 796 >UniRef50_Q2RL61 CRISPR-associated helicase Cas3, core n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RL61_MOOTA Length = 724 Score = 231 bits (589), Expect = 8e-59, Method: Composition-based stats. Identities = 124/724 (17%), Positives = 220/724 (30%), Gaps = 133/724 (18%) Query: 73 LHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSL 132 HD+GKF FQ R NH +AG Sbjct: 48 WHDLGKFHPEFQA----------------YLQGEGGRRGPNHSSAGAML----------- 80 Query: 133 GDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQARE 192 + + P + GHHG + + K+R + L Y + AR Sbjct: 81 ------------ASKYFEPLAFVIAGHHGGLPARAEL-KTRLKDKVQLKRYNTALQNARR 127 Query: 193 ---------EWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFN 243 L AG+ + LL AD+L + + L Sbjct: 128 VIPSLEPKQPLDMELPPFLQEGAGVDVASRVELFLRLLFSSLVDADFLDTERHFDPSLTK 187 Query: 244 EDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDAL 303 ++ + + R+++ SG V+ + Y+ A Sbjct: 188 LRQKE--ASIANLWSLLAANQQRLMDKSG--------GHVNQIRREIYEH-----CCRAA 232 Query: 304 PVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASH 363 + PG + PTG GKT + +A+A + + +I A+P +++ + Sbjct: 233 ELTPGFFSLTVPTGGGKTRSGMAFALLHALRYQKERIIVAIPY----TSIIEQTADVYRD 288 Query: 364 LFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCT 423 +F + N++ H A+ E W +++ + + V T Sbjct: 289 IFGNANVLEHHS--------------AVAPPLDPENPTPEELWARLASEN-WDATLIVTT 333 Query: 424 IDQVLISVLPVKHRFIRGL-GIGRSVLIVDEVHAYDTYMNGLLEAVLKAQAD-VGGSVIL 481 Q+ S+ + R L I SV+I+DEV ++ + VL+ G +VIL Sbjct: 334 TVQLFESLFSDRSSSCRKLHNIANSVIILDEVQTLPVHLLEPILDVLQQLVHFYGVTVIL 393 Query: 482 LSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQ 541 SAT P + + + + Y F++ Sbjct: 394 CSATQPALETSPFFRGLQGVREIIPDPQKY--------------------------FALL 427 Query: 542 PEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFH 601 + E++ Q + N A + L + Sbjct: 428 KRVGYQVPAGNEKWSWEQVAGVIRQSRQAMAVVNTKQDALALLEAL-----DDPEALHLS 482 Query: 602 ARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQ 661 RR+ V G LVATQVVE +D+DF ++ P D + Q Sbjct: 483 TLLCGAHRRKVLQEVRRRLG----NGRPCRLVATQVVEAGVDLDFPLVLRAVGPLDRIVQ 538 Query: 662 RLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASL 721 GR +R + + I P+ Y + T + + G L Sbjct: 539 AAGRCNREGK------LQEGRVIIFNPEEGCLPPGS--YKTGTEIAAT--LLASVTGVDL 588 Query: 722 FFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFK--ARKVLQWAEEYSLQDN 779 P YR + +Y +D + + E ++F+ ++V+ Y + Sbjct: 589 HDPGLYRIYFQRLYQSCTLDA-KGIQASRRSLNYPEVAQKFQMIEQRVVPVIVNYHEGPD 647 Query: 780 DETI 783 D + Sbjct: 648 DRRV 651 >UniRef50_C9RCY3 CRISPR-associated helicase Cas3 n=2 Tax=Thermoanaerobacteraceae RepID=C9RCY3_AMMDK Length = 821 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 155/878 (17%), Positives = 272/878 (30%), Gaps = 178/878 (20%) Query: 15 SKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIAL- 73 + + + L H VAA +S R + L L + L Sbjct: 8 DREGERIKRRYRLDAHLALVAA-------ESYTSLARLPRYQNLLP------LAATVGLA 54 Query: 74 HDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLG 133 HD GK+ FQ + F G Y + Sbjct: 55 HDFGKYTSYFQ------------DYLLTQRINPYKEHAFISGLWATYLAARQGAG----- 97 Query: 134 DFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREE 193 P E ++ AV HH L + D+ + + S + E Sbjct: 98 -----------PLEQLAAFM-AVLWHH-RDLDNLDRYLASRREMEDITSLDPDKYRRLEV 144 Query: 194 WISVLEALF--LTPAGLSINDIPPDCSSLLA--GFC----SLADW-------LGSWTTT- 237 +E L + G S+ + LL G DW LGSW Sbjct: 145 VEKQVEDLRQNIEKVGASLASAARHLARLLTRRGLTPPPFLTQDWCQCLEEFLGSWQEVY 204 Query: 238 -----NTFLFNEDAPSDINAL-----------RTYFQDRQQDASRVLELSG----LVSNK 277 + F PS + + EL + + Sbjct: 205 ISLYRHWRKFERQEPSLSPYFNVVLLFSALIDADKRHSARVREVKRPELPSNLVYIYKER 264 Query: 278 RCYEGVHALLD--NGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQ- 334 + GV ++ G R + P++ + APTGSGKT T + A L + Sbjct: 265 KFAGGVPFGINALRGKIFRHAAERMACAPLSQRFFTLTAPTGSGKTLTVINAALILRRRL 324 Query: 335 ----QIADSVIFALPTQATANA----MLTRMEASASHLFSSPNLILA--HGNSRFNHLFQ 384 + +I+ALP + + + ME + S+P++ L H + ++ Sbjct: 325 QEAYGFSPRIIYALPFTSIIDQTYQVLYELMEETLPGFASAPSVYLLKHHHLAEISY--- 381 Query: 385 SIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGL-G 443 E + + + + + ++ V T Q+L + + ++R ++ Sbjct: 382 -----KDPEDEDPRRFDEAMLLI-----ESWQSEVVVTTFVQLLHTFIGYRNRMLKKFCH 431 Query: 444 IGRSVLIVDEVHAYDTYMNGLLEAVLK-AQADVGGSVILLSATLPMKQKQKLLDTYGLHT 502 +GRS++I+DEV L+ VLK A ++ +IL++AT P Sbjct: 432 LGRSIIIMDEVQNIPVEYWPLVTEVLKRAAEELDLRLILMTATRPEW----------FEP 481 Query: 503 DPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIA 562 + P R R LL P Q E Sbjct: 482 GEALELAGEPEDIERYFKMLDRVRLLVEPGQYRV-----------------AEAAELFAR 524 Query: 563 AANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGK 622 + ++ N + + Y LK+L + +R ++ + + + Sbjct: 525 RYDPSRSHLVVLNTIRNSVDFYHYLKDLLPEGTPLYYLSTNIVPAEREKRIEALRTALHR 584 Query: 623 NGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPV 682 K +LV+TQVVE +D+DFD P D + Q GR +R+ ++ + V Sbjct: 585 GEKP----VLVSTQVVEAGVDLDFDVAWRDIGPVDAVVQVAGRCNRNFKRDKGD-----V 635 Query: 683 ATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPD-AYRQWLDSIYDDAEMD 741 + L D +G+ +Y + + E FP+ + +++ + Sbjct: 636 YLLNLVDEQGHFPAVRVYGAIHIKGA-----REFFSGRPEFPEAEFHSLVENFFS----- 685 Query: 742 EPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQ 801 +V D S K K + D +E +A + + LP Sbjct: 686 ---FVRARKDPSASGTILKAMKELRF--------KGDGEEKGVAGFQLIKD----LPNH- 729 Query: 802 TSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKR 839 ++ V D E+ +EA VN P R Sbjct: 730 -------IEVFVALDSKAEEVWEAYQQEVVNAPDRRSR 760 >UniRef50_B4SAU8 CRISPR-associated helicase Cas3 n=1 Tax=Pelodictyon phaeoclathratiforme BU-1 RepID=B4SAU8_PELPB Length = 739 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 122/738 (16%), Positives = 221/738 (29%), Gaps = 144/738 (19%) Query: 3 PFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSK-- 60 ++Y H S+ + HLL H AVA+ + F R Sbjct: 17 FWRYYAH-----SRPSEPSENWHLLEDHLQ---AVAE--------MAAGFARFFGAENWA 60 Query: 61 QRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLY 120 W HD+GK + +Q + + +G H G Sbjct: 61 DIAGRW-------HDLGKGTLSWQAYLRHENNVTDEFSAFYSGHPV-------HAIVGAQ 106 Query: 121 WFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASL 180 + S L + GHHG + + D D + Sbjct: 107 ELYKQSDQAGKL-------------------LAYCIAGHHGGLPNWHD-DAIAALKSRLM 146 Query: 181 ASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTF 240 + D + L L + I +L AD+L Sbjct: 147 EDFTDVDFPHSAPKLPSLLPL-SKIEQNRLGFIIQFFVRMLFSCLVDADYL--------- 196 Query: 241 LFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLV 300 D + ++ ++ ++ + E + + + N Y+ + L + Sbjct: 197 ----DTEASLSNKKSVWRSGYPALDELSERFSTNFDALRNKADSTTVVNQYREKVLNDCL 252 Query: 301 DALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEAS 360 + PGL + PTG GKT +LA+A + +I+ +P +++ + Sbjct: 253 KSAEFDPGLFSLTVPTGGGKTLASLAFALAHAKKYGKRRIIYVIPF----TSIIEQNAQV 308 Query: 361 ASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIG 420 + ++ H N V W S + + I Sbjct: 309 FRDMLGDDAILEHHCNFM----------------------VDESDWKSLLASENWDAPII 346 Query: 421 VCTIDQVLISVLPVKHRFIRGL-GIGRSVLIVDEVHAYDT-YMNGLLEAVLKAQADVGGS 478 V T Q S K + R L + S++I DEV A ++ +E + + + G S Sbjct: 347 VTTNVQFFNSFYASKTSYCRKLHNVADSIVIFDEVQAIPVEKLSPCMEVIKELSLNYGVS 406 Query: 479 VILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRF 538 IL +AT P + + + + + F L E+ Sbjct: 407 SILCTATQPAIEYSEQFQSGLQGVREIIQDVH------------SLFGALKRTEESFIG- 453 Query: 539 SIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDID 598 + + D+ L+ E+ V I N A Y L + + T Sbjct: 454 -----ELSVQDVATKLSNYEQ----------VLCIVNTRQQALDIYNALPKSDGT----I 494 Query: 599 LFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADL 658 A R K N + +G+ +V+TQ++E +DVDF + D Sbjct: 495 HLSALMYPLHRTNKLNEIRRRL-HDGEPCR---VVSTQLIEAGVDVDFPCVFRVVAGIDS 550 Query: 659 LFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNG 718 + Q GR +R+ G + + I ++ + + +L Sbjct: 551 IAQAAGRCNRN-------GLHEKACQVFVFSFADLPITPFIKQAA----QSAEKLFDLFK 599 Query: 719 ASLFFPDAYRQWLDSIYD 736 L P+ R++ YD Sbjct: 600 GKLTSPECVREYF---YD 614 >UniRef50_D0KYZ9 CRISPR-associated helicase Cas3 n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KYZ9_HALNC Length = 753 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 131/767 (17%), Positives = 236/767 (30%), Gaps = 137/767 (17%) Query: 42 WDQSVVLQNTFCRNEMLSKQRVKAW----LLFFIAL-HDIGKFDIRFQYKSAESWLKLNP 96 W+ L + M + + + L HD+GKF RFQ ++ Sbjct: 18 WNAPHDLVDHLNCVAMRAADHARPFGGQEWAHLAGLWHDLGKFRPRFQQYIRKASGFDFN 77 Query: 97 ATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAV 156 A S+ G + K H AG A ES + Sbjct: 78 ADASIKGEAG----KAPHSTAGALL-------------------ACDRFKESGRVLAYLI 114 Query: 157 TGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPD 216 GHH W +S Y Q +REE L PA + + Sbjct: 115 AGHH--------AGLYDWHSESSSLEYRLQQVDSREELDQALAE--NPPAEIIKHRTFTP 164 Query: 217 CSSLLAGFCSLADWLGSWTTTNTFL----FNEDAPSDINALRTYFQDRQQDASRVLELSG 272 + G F+ +D +Y D + A R G Sbjct: 165 DMRTIPG----------GKDGFALWVRMLFSCLVDADFLDTESYM-DMDKSAQRGDWQ-G 212 Query: 273 LVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVA--------PGLTVIEAPTGSGKTETA 324 + ++ A +P + L + PGL + PTG GKT ++ Sbjct: 213 MQKLLEQFDKFMARKTFAAEPTPVNQLRTDILRQCREKSHEPPGLFSLTVPTGGGKTLSS 272 Query: 325 LAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQ 384 +A+A + + +I+ +P +++ + +F +I H N+ + + Sbjct: 273 MAFALEHAKRNNKRRIIYVIPY----TSIIEQTADIFRDIFG-EAVIEHHSNAEVDANKE 327 Query: 385 SIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGL-G 443 + +SR E + I V T Q S+ K R L Sbjct: 328 NSRSRLACEN--------------------WDASIVVTTNVQFFESLFAAKTSRCRKLHN 367 Query: 444 IGRSVLIVDEVHAYDTYMNGLLEAVLKAQA-DVGGSVILLSATLPMKQKQKLLDTYGLHT 502 I SV+++DE + VL G +V+L +AT P ++ D Sbjct: 368 IVDSVVVMDEAQLIPAEFLQPILDVLNLLTLHYGVTVVLSTATQPALATREYFDA----- 422 Query: 503 DPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIA 562 +++ P+ L + ++ + L T + + Sbjct: 423 ------------KNNMRGLENVREIMDDPDALYAQ--LERVNVRLPTDWNTPTSWDTLAN 468 Query: 563 AANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGK 622 V I N + A + + E A R + ++ + Sbjct: 469 EIKQHNSVLTIVNRRNDAHELWDLMPEGTLH------LSALMCGEHRSQVIKQIRARL-- 520 Query: 623 NGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPV 682 K V +++TQ+VE +DVDF + D + Q GR +R + R E+ V Sbjct: 521 --KERVPTRVISTQLVEAGVDVDFPVVYRALAGLDSIAQAAGRCNREGKLERG---EVVV 575 Query: 683 ATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDE 742 P G R + RT + +E D + ++ + +Y ++D Sbjct: 576 FVPPKPAPPGLLRKGEDACRSVLHNRTGKPLER---------DLFARYFEKLYHACDLDA 626 Query: 743 PEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRD 789 E + + A A+++ L ++++ + R Sbjct: 627 QNITK-------LLEVDGQTLAVNFRTAADKFKLIKDEDSAPVIVRY 666 >UniRef50_Q1AZD4 CRISPR-associated helicase, Cas3 family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZD4_RUBXD Length = 821 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 153/791 (19%), Positives = 255/791 (32%), Gaps = 150/791 (18%) Query: 26 LLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIAL-HDIGKFDIRFQ 84 L H AAVA + + + A L L HD GK+ FQ Sbjct: 10 PLRDHL---AAVAGA--------AERGVLDAHVPDRERLATLARLCGLTHDFGKYTTYFQ 58 Query: 85 YKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPH 144 + L+ +P +H L F P Sbjct: 59 DRLPPKSLEPSPKAYG------------HHAFVSA------------LLGAFVTRARHPE 94 Query: 145 PYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLT 204 E+ A+ HHG ++ + R + + R E+ + EA Sbjct: 95 DGEAQLLVYLAIHRHHGNLVTPSEI-LPREKHLEDAPRFGELSAGLRREYAAA-EAQLEN 152 Query: 205 PAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNT------FLFNEDAPSDINALRTYFQ 258 G + + L G +++ F D A R Y++ Sbjct: 153 LRGEHREQVVSEMEEL--GLPEAKEFIAQRRWWEALPELRSFYRRLLREGDPGATRRYWR 210 Query: 259 -----DRQQDASR-------VLELSGLVSNKRCYEGVHALLDNGYQPR--------QLQV 298 DA + E + E V L P +++ Sbjct: 211 LLLLFSALIDADKHVSAGVPAAEQGTRIEPALVEEHVRGLKRPAGTPTAPAARRLAEIRH 270 Query: 299 LVDALPVA-----------PGLTVIEAPTGSGKTETALAYAWKLIDQ-----QIADSVIF 342 V P + + APTGSGKT TAL A +L ++ VI+ Sbjct: 271 EVREEAAGRTEDAPLRELYPAVLSLTAPTGSGKTLTALEVALRLRERVAEELGHRPRVIY 330 Query: 343 ALPTQATANAMLTRMEASASHLFSSPNLILAH-GNSRFNHLFQSIKSRAITEQGQEEAWV 401 ALP +E AH + +HL +S ++E E V Sbjct: 331 ALPFVNIIEQNAGVIEEVLRRR--------AHLAQNLPDHLLRSHHLAPLSEGDDENTEV 382 Query: 402 QCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFI-RGLGIGRSVLIVDEVHAYDTY 460 + +++ ++ +I V T + S++ ++R + R I SV+++DEV + Sbjct: 383 EERLLPAEAWEQ----EIVVTTFVSLFESLVTNRNRPLKRLHNIAGSVVVLDEVQSIPYE 438 Query: 461 MNGLLEAVLKAQ-ADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGV 519 L+ VL D+G +VI ++AT P + L + L + P R Sbjct: 439 QWRLVGHVLTTLVRDLGCTVIQMTATRP----RILPEARELLSAP-----------ERHF 483 Query: 520 NGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDV 579 G R ++ PE L DL + + G + ++ N + Sbjct: 484 RGLSRTRIIPRPE---------------VKTLDDLASF--VEERRSGGGSLLVVLNTISD 526 Query: 580 AQVCYQRLKELNN-----------TQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNV 628 + Y++L E +I T R + + G R + Sbjct: 527 SVELYRKLGERLGLRGYREYGRVPGPPEIFYLSTNITPWQRSRRVRLLKRCLG----RGL 582 Query: 629 GRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLP 688 ++V+TQVVE +D+DFD +I P D + Q GR +R PA PV + L Sbjct: 583 RPLVVSTQVVEAGVDLDFDEVIRDQGPLDSIVQVAGRCNRGGASPEPA----PVHVVFLE 638 Query: 689 DGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGN 748 DG G R E +Y V + + EE+ L ++ ++ + D + Sbjct: 639 DGRGRARAETVYGRVLPLISREMLREEVEEPELH--ALVERYFAAVEERKSDDLSLAYLD 696 Query: 749 GMDKFESAECE 759 + + E E Sbjct: 697 ALRELEFDRRE 707 >UniRef50_B1GZL6 CRISPR-associated protein Cas3 n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GZL6_UNCTG Length = 814 Score = 229 bits (583), Expect = 4e-58, Method: Composition-based stats. Identities = 83/488 (17%), Positives = 162/488 (33%), Gaps = 49/488 (10%) Query: 299 LVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIA--DSVIFALPTQATANAMLTR 356 + G +E PTG GKT + +A ++ + A D +I+ +P Sbjct: 273 AIAGQTYQKGCYKLEVPTGGGKTLASFRFAVEMAKKCNAGIDRIIYCIPFTTIIEQNANT 332 Query: 357 MEASASHLFSSP-NLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVF 415 + S N++L H ++ S+ ++G+EE + ++ + Sbjct: 333 IRKIVEADKSDKGNIVLEHHSN---------ISQTSYDKGKEEEFNPTELYMQSWDIP-- 381 Query: 416 LGQIGVCTIDQVLISVLPVKHRFIRGLG-IGRSVLIVDEVHAYDTYMNGLLEAVLKAQAD 474 I T Q+L + + R L + S++I DEV + L + D Sbjct: 382 ---IIFTTNVQILEVLFGRRTSDTRKLHQLANSIIIFDEVQSLPIKCVHLFNNAINYLVD 438 Query: 475 V-GGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQ 533 +V+L +AT P LLD ++ + +I R + PE Sbjct: 439 FCNTTVVLCTATQP------LLDNVDPERGCLKLSEKPDIIQNRNCVFDSLKRVEVKPEI 492 Query: 534 LPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNT 593 ++ + + N +ICN A+ ++ +K Sbjct: 493 KDVDYT-------------SEEIASKAAEFVNDNENCLVICNTTKSAKEIFEIIK--GRV 537 Query: 594 QVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQH 653 ++ AR R+ + K K +V+TQV+E +D+DF+ I Sbjct: 538 DYEVYHLSARMMPIHRKIVLRAIKRKLNKRKKIA----VVSTQVIEAGIDIDFNCGIRAL 593 Query: 654 CPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHI 713 D + Q GR++R+ G + E G + I R + + Sbjct: 594 AGLDSIIQAAGRINRNGTLKTNDGNNKKGKLYVYNFNENLGILDDI---KRGKDTAKIIL 650 Query: 714 EELNGASLFFPDAYRQWLDSIY--DDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWA 771 A L + + D + + D + N + + +++ + L Sbjct: 651 RRHPNADLLDNKIIKDYYDDFFYQKEQRKDMQFLICNENTELDLLSENRKYNGKYNLTLN 710 Query: 772 EEYSLQDN 779 + + N Sbjct: 711 QSFKEASN 718 >UniRef50_B0KB27 CRISPR-associated helicase Cas3 n=7 Tax=Bacteria RepID=B0KB27_THEP3 Length = 784 Score = 229 bits (583), Expect = 5e-58, Method: Composition-based stats. Identities = 133/777 (17%), Positives = 258/777 (33%), Gaps = 134/777 (17%) Query: 39 DCWWDQSVVLQNTF--CRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNP 96 D + S ++++ F + ++ K+ HD GK FQ K Sbjct: 17 DHLINTSKIIRSYFNEKKVAIIDKETFLKTATIISLCHDFGKATNYFQKYLFTENEKERN 76 Query: 97 ATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAV 156 ++ +M Y + ++ G F F V Sbjct: 77 KLKTM----EEMHHSLLSAVVAFYLVKNEINAQDRKGILFPF------------IAFLIV 120 Query: 157 TGHHG---FILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDI 213 HHG + + D E+ + +K L +IND Sbjct: 121 KNHHGDLKNVFNEVILDDKELEVLKKQLNSIDDEKLQVLNGKLRNAGLNENLTKSAINDY 180 Query: 214 PPDCSSLLAGFCSLADWLGSWTT---TNTFLFNEDAPSDINALRTYFQDRQQDASRVLEL 270 D + S E+ I L + DA + + Sbjct: 181 I--------------DSINSELRKIKRELRRLKEEQDVSIYLLLNFLFSLLVDADKTEVV 226 Query: 271 SGLVSNKRC---------------YEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAP 315 G+ + KR + + ++ + +VL + + + I P Sbjct: 227 VGIDNIKRPEIKFEEQLVKEYKASFPDKESKINLLREEAYKEVLEKDIDIKQKIMSINLP 286 Query: 316 TGSGKTETALAYAWKL-----IDQQIADSVIFALPTQATANAMLTRMEASASH--LFSSP 368 TG GKT T +A+A KL + + +I++LP + +E + + Sbjct: 287 TGLGKTLTTIAFAMKLWAKLYKETGVKYRIIYSLPFLSIIEQNSNVLEDLLRYNGIQPDT 346 Query: 369 NLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVL 428 +IL H +HL ++ TE E+A + W S+ I + T Q Sbjct: 347 EIILKH-----HHLSDIRYTKNNTEFEDEQAKILIEGWNSE---------IIITTFVQFF 392 Query: 429 ISVLPVKHRFIRGLG-IGRSVLIVDEVHAYDTYMNGLLEAVLKAQAD-VGGSVILLSATL 486 +++ K++ +R + S++I+DEV + L + +LKA A+ + +I ++AT Sbjct: 393 HTLVSEKNKTLRKFHRLANSIIILDEVQSIPFKYWLLTKELLKAVANELNSYIIFVTATQ 452 Query: 487 PMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPIC 546 P+ +++ YPL+ ++ Q + + Sbjct: 453 PLIFREE---------------EIYPLVA-------------------KTKYFTQMDRVE 478 Query: 547 LADMLPDLTMLERMIA--AANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARF 604 + L LE + N G I N + AQ Y L+ +I Sbjct: 479 IIPKLSRDITLEELSEMFDLNDGKSYLFILNTIKSAQQFYNILRAKIP-NDEIIYMSTHV 537 Query: 605 TLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLG 664 +R E+ ++ K R V TQ+VE +D+DFD ++ P D + Q G Sbjct: 538 VPMERMERIEKI--------KEGKIRFAVTTQLVEAGVDIDFDVVVRDIAPLDSINQSAG 589 Query: 665 RLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFP 724 R +R+ R + V + L D +G +++Y + ++ T++ + + + Sbjct: 590 RCNRNWRG------KGEVYVVSLIDEKGQKYSKYVYDKI-LLGITREILSKYDTIK---E 639 Query: 725 DAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDE 781 + ++ Y + N + A R+ + ++ L ++D Sbjct: 640 QELLKIIEKYYQEVSERMSS---NEGRELLDAIYTLRYDSEDGNMCISKFELIEDDY 693 >UniRef50_C0EDE1 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EDE1_9CLOT Length = 796 Score = 228 bits (582), Expect = 6e-58, Method: Composition-based stats. Identities = 132/769 (17%), Positives = 230/769 (29%), Gaps = 113/769 (14%) Query: 67 LLFFIAL-HDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQD 125 L + L HD+GK+ +F + + G+ + + Sbjct: 42 LCYLAGLLHDMGKYTEKF----------------KVYITAAARGESVRRGSVNHTFASVR 85 Query: 126 SLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFI----------------LHSQDQ 169 + + D + A HHG D Sbjct: 86 FIFNRWHRDSGQTLHNM-----TAELLAFACGSHHGQFDCVSLEGKDGYLHRLEAEGVDY 140 Query: 170 DKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLAD 229 +++ AS D+ E V+ A L + + SL+A A Sbjct: 141 EEAIENYLRYCASPEELDRLFEEAEQEVVRAQELLFSCSKTKEEIYFYFSLIARMALSAV 200 Query: 230 WLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDN 289 G T F P + L S+ R ++ + Sbjct: 201 IEGDRRDTAEFDQGHALPQQETEPD--WDALLSRVEEKL------SDFRADSEINRARKH 252 Query: 290 GYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQAT 349 + +A G+ + PTG GKT + L YA + V F +P + Sbjct: 253 ISD-----LCREAASRGGGIFRLNVPTGGGKTLSGLRYALA-RAAEGQQRVFFVIPLLS- 305 Query: 350 ANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQ 409 +L + P LIL H ++ K + +E + W Sbjct: 306 ---ILDQNAKEIRKYLEDPKLILEHHSNVMRE-----KPDKKEIEELDETELVLENWR-- 355 Query: 410 SNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGL-GIGRSVLIVDEVHAYDTYMNGLLEAV 468 + + T+ Q+L ++ K IR + + SV+++DEV + M Sbjct: 356 -------APVVITTLVQLLNTLFDGKTSCIRRMTALCGSVIVIDEVQSVPRKMLSQFNLA 408 Query: 469 LKAQADV-GGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDL 527 L A G +V+L SAT P + G+ A++ +L Sbjct: 409 LNFLATFCGATVVLCSATQPCLDQ-----------------------TDHGLRYAEQPEL 445 Query: 528 LAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRL 587 + + E L R + E L L + + V +ICN A+ ++ + Sbjct: 446 VPYDETLW-RVFRRTELTDLRKSLTVEELAAFALERQQEAGSVLVICNTKSEAKRIFEAI 504 Query: 588 KELNNTQVDIDLFH--ARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVD 645 + +Q L+H R + + N K + + V+TQ+VE +D Sbjct: 505 R----SQYSGLLYHLSTSMCTKHREQTLEGIKDAL--NPKSPIPVLCVSTQLVEAGVDFS 558 Query: 646 FDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIY---SN 702 F +I D + Q GR +R R PV + L GE GR I Sbjct: 559 FGCVIRIAAGMDNVVQAAGRCNRSGEFGR----ICPVYIVRL-RGENLGRLPEIRQAQQA 613 Query: 703 VRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRF 762 M Q + +A + + +Y + ++ + Sbjct: 614 AECMLLQFQQNPQKFDCDPTGREAIKTYYQDLYAEMTQGSQDYPLPKLKTSLFQLLSCNG 673 Query: 763 KARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDG 811 +A A Y L T R E + + GK+L++ Sbjct: 674 QAEGHCDTASRYLLVQGFRTAGEQFRVFEDN-TVDVVTPYGEGKKLIEA 721 >UniRef50_C8VWJ7 CRISPR-associated helicase Cas3 n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VWJ7_DESAS Length = 801 Score = 228 bits (581), Expect = 8e-58, Method: Composition-based stats. Identities = 118/701 (16%), Positives = 228/701 (32%), Gaps = 107/701 (15%) Query: 73 LHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSL 132 LHD+GK +F NP SL G + NH AG Sbjct: 46 LHDMGKGTRKFDAYIRYCAQ--NPQDKSLKG-------QVNHSTAGAKLI---------- 86 Query: 133 GDFFSFFDAAPHPYE-SWFPWVEAVTGHHGFILHSQDQD----KSRWEMPASLASYAAQD 187 + SF++ A + + AV HHG ++ D + P Y Sbjct: 87 --YDSFYNTADRLQKFTAQLISLAVCSHHGGLIDCLDLRGRDKYTERMKPDEDILYDEAL 144 Query: 188 KQAREEWISV--LEALFLTPAGLSINDIPPDCSSL--LAGFCSLADWLGSWTTTNTFLFN 243 R E + L+ LF A I + + L AG C W + +LF+ Sbjct: 145 NYFRSECLETNQLKDLFAKAAE-EIKAVITHINQLNSSAGQC----WFA-YGVLEKYLFS 198 Query: 244 EDAPSDINALRTYFQDRQQDAS----RVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVL 299 +D + +++ + + + + NG + Sbjct: 199 CLIDADRYDTYLFMENKARKEKVNKYALWAELAGILEAKLSSYPQESKINGLRAEISLAC 258 Query: 300 VDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEA 359 + G+ + PTGSGKT ++L YA + D + + +P + Sbjct: 259 RNFARNGSGVYQLAVPTGSGKTLSSLRYALNHAQECDKDRIFYIIPYTTIIDQ----NAR 314 Query: 360 SASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQI 419 ++ +IL H ++ +E V + L++ I Sbjct: 315 EIKNILGHEEMILEHHSNLIVA--------------DDEEEVVNYKLLTERWD----SPI 356 Query: 420 GVCTIDQVLISVLPVKHRFIRGLG-IGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVG-G 477 + T+ Q L ++ + +R L + SV+I DE+ A + + L A V Sbjct: 357 ILTTMVQFLNTLFNGGTQDVRRLHHLANSVIIFDEIQAIPIKCISMFNSALSFLAGVCQA 416 Query: 478 SVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPR 537 ++IL +AT P+ + ++ P++ + +I+ Q + P+ + Sbjct: 417 TIILCTATQPLLETTEI---------PLKLSENPNIISDVYEKFRQFKRVDVIPKLVTGG 467 Query: 538 FSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELN---NTQ 594 +S + + ++ + + ++ N + A+ + LK N + Sbjct: 468 YS-------------AAALKDFILDRMDQFNSLLVVLNTKNSAREVFNELKAANQGLPEE 514 Query: 595 VDIDLFH--ARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQ 652 +FH R + + G I V+TQ++E +++ F+ L+ Sbjct: 515 KQCQVFHLSTNMCPAHRLKALQAMKEQLG-----CGKVICVSTQLIEAGVNISFECLVRS 569 Query: 653 HCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQH 712 D + Q GR +RH K R I+ + E + I T++ Sbjct: 570 LAGLDSIAQAAGRCNRHGEKERGD------VYIVNLEREDVSKLVDIKKGQEC---TERV 620 Query: 713 IEELNGASLFFPDAY--RQWLDSIYDDAEMDEPEWVGNGMD 751 + + F Q + Y + + + Sbjct: 621 LRDFEDNPESFDRDLLSPQAMARYYKYYFYERRTQMNYNLK 661 >UniRef50_C9R3Z8 CRISPR-associated helicase Cas3 n=4 Tax=Proteobacteria RepID=C9R3Z8_AGGAD Length = 768 Score = 228 bits (581), Expect = 8e-58, Method: Composition-based stats. Identities = 130/821 (15%), Positives = 241/821 (29%), Gaps = 139/821 (16%) Query: 23 DIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIAL-HDIGKFDI 81 H L H VA L F A + L HD+GKF Sbjct: 15 HFHPLQNHLKKVA-----------KLARRFAGRYG-------ALFAEYAGLLHDLGKFQE 56 Query: 82 RFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDA 141 FQ L + K H AG + Q+ + LG ++ Sbjct: 57 AFQEYIRRV-TGFERENAHLEDIESSKPHKIPHSTAGAKYATQNL--DPFLGHLLAYL-- 111 Query: 142 APHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEAL 201 + GHH + D+ ++ + + A + A E ++E Sbjct: 112 --------------IAGHHAGLADWYDKGSLKYRLAQADDELA--ESLAGLEKSGLVEDF 155 Query: 202 FLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQ 261 D+ + +G L FLF+ +D + Sbjct: 156 LSLSGDALEEDL---LNVWESGIN-----LEELHIWMRFLFSCLVDADFLDTEAFMNGFV 207 Query: 262 QDASRVLELSGLVSNKRCYEGVHALLDNGY----------------QPRQLQVLVDALPV 305 + + +G N E +H+ + + L A Sbjct: 208 D--ADAAQQAGFRPNFPDLEDMHSRYEKHMLDLAEKSDKHSVLNQERSAILAQCFSAAES 265 Query: 306 APGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLF 365 L + PTG GKT +L +A K + +I+A+P +++ + Sbjct: 266 DRTLFSLTVPTGGGKTLASLGFALKHALKFGKKRIIYAIPF----TSIIEQNADVFRKAL 321 Query: 366 SSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTID 425 ++ H N ++ K+R E + + V T Sbjct: 322 GDDAVLEHHSNLEVKEDKETAKTRLAAEN--------------------WDAPLIVTTNV 361 Query: 426 QVLISVLPVKHRFIRG-LGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQA-DVGGSVILLS 483 Q+ S+ + R I SV+I+DEV + +++ A D G + +L + Sbjct: 362 QLFESLFAARTSRCRKIHNIADSVIILDEVQQLPRDFQKPITDMMRILACDYGVTFVLCT 421 Query: 484 ATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPE 543 AT P K +D +G + +++ ++ Sbjct: 422 ATQPELGKN--IDAFGRTVLEGLPDVR-----------------EIVADKIALSERLRRV 462 Query: 544 PICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHAR 603 I + + + + V + N A+ + L + A Sbjct: 463 RIKMPPPNDETQSWQEIADEIAERPCVLAVVNTRKHARRLFAAL----PSNGIKLHLSAN 518 Query: 604 FTLNDRREKENRVISNFG--KNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQ 661 R E V + G+ +V+TQ++E +D+DF + D + Q Sbjct: 519 MCATHRSEVIALVRRYLELYREGRLKKPLWVVSTQLIEAGVDLDFPCVYRAMAGLDSIAQ 578 Query: 662 RLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASL 721 GR +R + + A P G + T++ ++ A Sbjct: 579 AAGRCNREGKLPDLGEVIVFRAEQGAPSGSLKQGQD----------ITEEMLKAGLLADP 628 Query: 722 FFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDE 781 P A+ ++ ++D+ + +F S + K R AE + L DN Sbjct: 629 LSPLAFAEYFRRFNSKGDLDKHKITELLTAEF-SNDNPLAIKFRTA---AERFRLIDNQG 684 Query: 782 TILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQ 822 L +P +P + + K Q E ++ Sbjct: 685 VALI--------VPFIPLIHENGDKSPKIVQANELDDFFRR 717 >UniRef50_C7NNV2 Putative helicase n=2 Tax=Halobacteriaceae RepID=C7NNV2_HALUD Length = 864 Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 143/920 (15%), Positives = 268/920 (29%), Gaps = 159/920 (17%) Query: 15 SKSLTKGNDIHLLIYHCLDVAA-VADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIAL 73 S G + L H DVA VA D + + +++ + + Sbjct: 6 SHPPEGGREGVALEVHLADVADRVAHVVPDDATTP----------TDGSLRSVVETLAWV 55 Query: 74 HDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLG 133 HD GK FQ P L + H Sbjct: 56 HDFGKATTYFQ---EYLLEDSEADPPMLRHHAPIGSFAAYHA------------------ 94 Query: 134 DFFSFFDAAPHPYESWFPWVEAVTGHHGFIL----------HSQDQDKSRWEMPASLASY 183 D E+ AV HHG + H +D D + + Sbjct: 95 -----LDTQGFDTETCLAGFVAVAKHHGRLPNVAEYVVDRTHRRDGDSRQNSVEKRQTVV 149 Query: 184 AAQDKQAREEWISVLEALFLTPAGLS---------------INDIPPDCSSLLAGFCSLA 228 Q + + E +F G S +++I + AG Sbjct: 150 LKQIGDIHDTVPDLAETVFENATGGSGGWESFVRSYQSGSLLSEIEETVGTQTAGRGVDP 209 Query: 229 D-------------WLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVS 275 D W T S+ A + D LE Sbjct: 210 DALSSSCYGLVLQCWSALVLADKTSAAGAANESETYAPSQPGFETISDYIEDLEAGVDAD 269 Query: 276 NKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQ 335 + + L + G+ + PTG GKT T L+ A+ L D Sbjct: 270 KAGTKTERLNYHRSDARKNVLDNVASFAESGGGVATLTLPTGMGKTLTGLSAAFALRDAL 329 Query: 336 IADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQG 395 + V++ LP + + ++ ++ + L H S +S ++ Sbjct: 330 GGNRVVYGLPFTSIIDQVVDEIQEIYETDTAGRLLTAHHHLSETTIRDTDDQSADDADRN 389 Query: 396 QEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVL-PVKHRFIRGLGIGRSVLIVDEV 454 + A + W + V T Q+ S+ P + ++ + +V+++DE Sbjct: 390 DDVAGMLGESWR---------AGVTVTTFVQLFESLAGPQNRQSMKLPALRDAVVVLDEP 440 Query: 455 HAYDTYMNGLLEAVLKAQ-ADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPL 513 + L+ ++ +VI ++AT P + D + L DP Sbjct: 441 QSLPLDWWKLVPRLVDVLTEQYNATVIAMTATQP----RLFEDEFELVDDPDRYFEVVRR 496 Query: 514 INWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLI 573 +++ + +R+ + + AA +G + Sbjct: 497 VSYELDDSTERYIESQSEPK------------------SYAAAANELRAAVESGQTTLAV 538 Query: 574 CNLVDVAQVCYQ------------------------------RLKELNNTQVDIDLFH-- 601 CN +D A+ + L + D L H Sbjct: 539 CNTIDSARELTEQVGDGSFVDVGRLYDDELQEAGSADDVDPVELAKRVAATDDNALLHLS 598 Query: 602 ARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQ 661 R DR +I +R + ++TQ+VE +D+ FD + P D + Q Sbjct: 599 TRLRPADRLT----LIETAKALTERGHPTLAISTQLVEAGVDISFDRVFRDLAPIDSIVQ 654 Query: 662 RLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRT-QQHIEEL--NG 718 GR +R + + + V + +PD + E +Y+ + T + ++ Sbjct: 655 AAGRCNRSFEREQGV---VTVWWLDVPDEQSKTPAEAVYNRGTTLLPTVADTLRQIRDES 711 Query: 719 ASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQD 778 SL D R+ ++ ++ D+ D + A+ ++ L Q Sbjct: 712 GSLSETDVARRGVEWYFERLREDKDVGKQTYADWVDDAKAKE-------LGTISLIDEQL 764 Query: 779 NDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWK 838 + E ++ T + Q + + L GQ+ ++ + Sbjct: 765 SAEIVVTRTPAERERAEAIRNAQRNFEFETL-GQLVDETKPLRISVPYYSEDSETADAIT 823 Query: 839 RSFSEVVDEDGLLWLEGKQN 858 V DE G+ L+ +QN Sbjct: 824 DLPPLVEDE-GIYELDVQQN 842 >UniRef50_A0B6V7 CRISPR-associated helicase Cas3 n=1 Tax=Methanosaeta thermophila PT RepID=A0B6V7_METTP Length = 804 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 144/863 (16%), Positives = 268/863 (31%), Gaps = 145/863 (16%) Query: 26 LLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQY 85 LL+ H +V + +S + + +K A HD+GK FQ Sbjct: 17 LLVDHLRNVGEMCRRTVAESARNLD--------DAEILKNVAYIIGATHDLGKATGFFQE 68 Query: 86 KSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHP 145 L + R + + + + P Sbjct: 69 --------------YLRETDEKRRRALRSRDVTKHGLLSSLFTYAIVREHLRKR-GCEMP 113 Query: 146 YESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTP 205 AV HHG + ++ D + E VL + Sbjct: 114 GALPLVSFIAVRRHHGDLTNALD-----------------EISAIYAERERVLSVIEEQV 156 Query: 206 AGLSINDIPPDCSSLLAGFC----------SLADWLGSWTTTNTFLFNEDAPSDINAL-- 253 + L N+ ++LL G L D L + N +D+ Sbjct: 157 SSLDRNECAQIFNALLGGVVEIDLDSLLDHILRDALKDLRGEKPLVRNLGRRNDVLPYFV 216 Query: 254 RTYFQDRQQDASRVLE------------LSGLVSNKRCYEGVHALLD--NGYQPRQLQVL 299 DA + LV R G D NG + Sbjct: 217 AQLLYSALLDADKTDAGLEGVDLGRVNIPPDLVDRYREARGFSERRDGINGMRNEIYHDA 276 Query: 300 VDAL---PVAPGLTVIEAPTGSGKTETALAYAWKLI-----DQQIADSVIFALPTQATAN 351 V + + + + PTG+GKT T+LA A +L ++ + +++ALP + + Sbjct: 277 VSRISGWDLNERIISLNVPTGTGKTLTSLAMALRLRRRLMNERGVMPRIVYALPFLSIID 336 Query: 352 AMLTRMEASAS--HLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQ 409 E + + +++L H +HL ++ E + + + W S+ Sbjct: 337 QTCDVFEDVLESAGIRADSSVLLKH-----HHLSDITYTKGDEEFESDVSLLLMEGWNSE 391 Query: 410 SNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLG-IGRSVLIVDEVHAYDTYMNGLLEAV 468 I V T Q+ ++ ++R +R I S++I+DEV A LL Sbjct: 392 ---------IVVTTFWQLFHTIFSNRNRRLRKFNRIANSIIIMDEVQAVPHRYWHLLHDS 442 Query: 469 LKAQ-ADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDL 527 LK +IL++AT P+ ++ G + V + Y +R +N + + Sbjct: 443 LKMLCEKFNSYLILVTATQPLIFSEE----SGEIREAVSDKERY----FRALNRVELRPM 494 Query: 528 LAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRL 587 + P L + L N ++ N + A+ Y + Sbjct: 495 IDAPMS-----------------LEEFEALLEGEIHNNPEKDFLIVLNTIRSARNVYSAI 537 Query: 588 KELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFD 647 K L+ ++ DRR++ R+ G +I V+TQ++E +D+D D Sbjct: 538 KALDLRDTELFYLSTHVVPRDRRDRIRRIRDERG-----GRRKITVSTQLIEAGVDIDAD 592 Query: 648 WLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMW 707 + P D + Q GR +R+ K R ++++ E +IY ++ Sbjct: 593 IVFRDLAPLDSINQVAGRCNRNLSKGRG------RVSVVILRDERRELCRYIYDGF-LIS 645 Query: 708 RTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKV 767 +T + + + V +GM S C + Sbjct: 646 KTLDILRSCGEC--IEEREILELNSRYFR--------VVRSGMSDETSRRCMSMLSGLEF 695 Query: 768 LQWAEEYSLQDNDE-TILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEAL 826 E + L + DE + E + + + L + + Sbjct: 696 GDLGESFRLIEEDEPRVDVFVETDERASDVWQAYRD-----LRSERDLWERRRRYLRLRN 750 Query: 827 ALNRVNVPFTWKRSFSEVVDEDG 849 AL+ + + + VV+ G Sbjct: 751 ALSDYMISLPRRLAADLVVENQG 773 >UniRef50_A2SRR5 Metal dependent phosphohydrolase n=1 Tax=Methanocorpusculum labreanum Z RepID=A2SRR5_METLZ Length = 834 Score = 226 bits (575), Expect = 4e-57, Method: Composition-based stats. Identities = 106/708 (14%), Positives = 211/708 (29%), Gaps = 129/708 (18%) Query: 67 LLFFIAL-HDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQD 125 L L HD GK FQ L P + + K NH AG + Sbjct: 50 LAALCGLLHDTGKAKQEFQ-------EYLKINDPEIR---KRYRGKINHSTAGAKYI--- 96 Query: 126 SLSEQSLGDFFSFFDAAPHPYESWFPWVEAVT--GHHGFILHSQDQDKSRWEMPASLASY 183 F +D + +E + + A+ HHG ++ D + Sbjct: 97 ----------FEKYDKSTDNFERFTAQLIALGICSHHGGLIDCIDLEGQDLFFKRINPEK 146 Query: 184 AAQDKQAREEWI------SVLEALFLTP-----------------AGLSINDIPPDCSSL 220 +++ + LE LFL +G I + Sbjct: 147 EIYFEESIHNFENDCVSQDELETLFLKAVDEVKTFNEKNRSRLGISGDEITFTRGMLARY 206 Query: 221 LAGFCSLADWLGSWTTTNTFLFNED--APSDINALRTYFQDRQQDASRVLELSGLVSNKR 278 L AD ++F F ++ ++ ++ L+ ++ Sbjct: 207 LLSCVIDAD------RFDSFCFEDNIVTKDTPKIAVEKWEKLAENLDEFLDQKPII---Y 257 Query: 279 CYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIAD 338 + + + + + G+ + PTG GKT ++L YA + + Sbjct: 258 DIDELRKEISLSCKAFGKKTS--------GIYRLNVPTGGGKTLSSLRYALAHAAEWNKE 309 Query: 339 SVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEE 398 + + +P + + + ++ H N + Sbjct: 310 RIFYVIPFTTIIDQNAKVIREALR---EDDLILEHHSNLVYEDPLDENDESITGADEGRN 366 Query: 399 AWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVK-HRFIRGLGIGRSVLIVDEVHAY 457 + +W S I + T Q+L ++ K R + S++I DEV Sbjct: 367 YRLLTERWDS---------PIILTTTVQMLNTLFLGKAGSIRRMHNLANSIIIFDEVQMI 417 Query: 458 DTYMNGLLEAVLKAQADV-GGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINW 516 + L +++ G ++IL +AT P K P I Sbjct: 418 PVKCLRMFNTALNFLSEICGTTIILCTATQPKLDKVN------------------PPIRL 459 Query: 517 RGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNL 576 D R ++ E + P+L E + ++ +I N Sbjct: 460 SAPADMVSVDFGKF-----RRTNVCDERLQNGYSAPELA--EFVEDKLENNEKILVILNT 512 Query: 577 VDVAQVCYQRLKELN------NTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGR 630 + Y L + + RR + R+ + +N Sbjct: 513 KTAVKNLYAHLSAKKLTDFTTYKDLSLYYLSTNLCPAHRRNRLERIKDDLK---IKNHRM 569 Query: 631 ILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDG 690 I V+TQ++E +D+ FD +I D + Q GR +R+ + I+ Sbjct: 570 ICVSTQLIEAGVDISFDCVIRSAAGIDSIAQAAGRCNRNG------DVQCRDVFIVNSSD 623 Query: 691 EGYGRHEHIYSNVRVMWRTQQH-IEELNGASLFFPDAY--RQWLDSIY 735 E + ++ + ++ +H + + F + ++ +D+ Y Sbjct: 624 EKLSGLK----DIDLGKKSAEHVLSDFAKNPAGFDNDILSQKMIDTYY 667 >UniRef50_B1LAM3 CRISPR-associated HD domain protein n=2 Tax=Thermotoga RepID=B1LAM3_THESQ Length = 721 Score = 225 bits (573), Expect = 6e-57, Method: Composition-based stats. Identities = 122/785 (15%), Positives = 253/785 (32%), Gaps = 159/785 (20%) Query: 25 HL---LIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDI 81 H LI H V ++ L ++ ++ ++ ++ HDIGK Sbjct: 7 HPDRRLIDHLE---GVKKRSMEKFRSLDLSWEELFGYDERILEEFVSLLSESHDIGKSTT 63 Query: 82 RFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDA 141 FQ LNG + + ++ + +F++ ++L D F Sbjct: 64 YFQ--------------KHLNGERVERSLSAHAFSSAVAFFHRS----KNLPDKLRIFG- 104 Query: 142 APHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISV---- 197 E + HHG + D + + S +D R + + Sbjct: 105 -----------FEIIRRHHGDFRNFLDIEIDEKVLEKHF-SAIPEDFLRRYDLHDLKLSE 152 Query: 198 ----LEALFLTPAGLSINDIPP-DCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINA 252 ++ L + L ++ L S + +E PS + Sbjct: 153 TMKEMKKLISKFSILGKKELSDYFLIHLFMSVLV------SSDREDVVFKDEPLPSLPSY 206 Query: 253 LRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVI 312 + +++ + K + + + +++ P + I Sbjct: 207 EKEKILSYREN----------LGRKNQIDSLRWRFQD--------EILNFKPERGRIYSI 248 Query: 313 EAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLIL 372 APTG GKT L +A L D+ +I+ALP + +++ L Sbjct: 249 TAPTGIGKTLANLLFAGHLADEDTI--IIYALPFINIIEQTVDKIKEIFETEDPFFVLPF 306 Query: 373 AHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVL 432 H + + E+ + + W S+ + V T +L S++ Sbjct: 307 HH------------LANPVYEEADKYEDLLMNLWHSR---------VIVTTFVSLLESLI 345 Query: 433 PVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQ 492 + + ++VLI+DEV A +E ++ + +G +V+L +AT P K+ Sbjct: 346 TFR-KIPFFYKFPKAVLILDEVQAIPHEYWTPVEKTVEFLSKMGTTVLLSTATKPALLKE 404 Query: 493 KLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLP 552 + V N + Y ++ + + + Sbjct: 405 A--------QEVVSNKNVYF-------------------------TALNRTVLKVEKEMS 431 Query: 553 DLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREK 612 E +I G + +I N + A+ Y ++ + T +R R E Sbjct: 432 FEEYKEFVIETLKDGKRTLIITNTIREAEEIYDAVESMGKTCF----LSSRVIPKHRLEI 487 Query: 613 ENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRK 672 +++ N + V+TQVVE +D+ F+ +I P D + Q GR +RH Sbjct: 488 VSKI----------NEYDLCVSTQVVEAGVDISFERVIRDIAPVDSIVQAAGRCNRHFEL 537 Query: 673 YRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLD 732 + +PV + + ++Y + + T+ + L + + ++ Sbjct: 538 EKGEVIVVPVK----DERKNTLFSSYVYGS----FLTETSMNVLKNYKVLEESEFFTLVE 589 Query: 733 SIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEM 792 +D +M E+ +K E+SL + + T+ + E Sbjct: 590 DFFDYVKMYGNPDKKGIGKALENLNFKK----------IGEFSLIEPEPTVPFIVLIDEE 639 Query: 793 SLPLL 797 + + Sbjct: 640 AQRVF 644 >UniRef50_C1TRB8 CRISPR-associated HD domain protein n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TRB8_9BACT Length = 859 Score = 225 bits (573), Expect = 7e-57, Method: Composition-based stats. Identities = 110/737 (14%), Positives = 212/737 (28%), Gaps = 123/737 (16%) Query: 20 KGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKF 79 L+ H +V L +F L + LHD+GK+ Sbjct: 19 GDGWEQPLMDHLRNVG-----------RLSESFAGKIGLGD--AGKMIGL---LHDLGKY 62 Query: 80 DIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFF 139 FQ S K+NP + P ++ K +H AG + + G Sbjct: 63 SSSFQNYLLSSSGKINPDSEEYMDPFSKKG-KIDHSTAGAKFIWEKLRGVGKCGQG---- 117 Query: 140 DAAPHPYESWFPWVEAVTGHHGFILHSQDQDKS-----RWEMPASLASYAAQDKQAREEW 194 + HH ++ +D R + P Y+ + Sbjct: 118 ------EVCAQIMALCIASHHSGMIDCLSKDDKLVFWDRMDKPDEGTRYSECLSAMENDL 171 Query: 195 ISVLEAL----------------------FLTPAGLSINDIPPD----CSSLLAGFCSLA 228 ++L F T + I + L A Sbjct: 172 KTLLNESLDDSKVNSMVNSFFSYLNKTARFSTGEKYGFSTIGAFNLGMTARFLLSCLVDA 231 Query: 229 DWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLD 288 D + S F + +Q RVL+ Sbjct: 232 DRIDSAE----FEDPSRKKERLRRRDFDWQTGIDRLERVLD-----------SYKQDSQV 276 Query: 289 NGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQA 348 N + R + G+ + PTG GKT +L YA + +I+ +P + Sbjct: 277 NEIRRRISDECLKRADDPQGIYTLSVPTGGGKTLLSLRYAMRHALHHDLHRIIYVVPFTS 336 Query: 349 TANAMLTRMEASASHLFSS-PNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWL 407 + + + P ++ H N + W Sbjct: 337 IIEQNAQEVRSILEGEGDAFPWVLEHHSNIE----------------------PERQTWS 374 Query: 408 SQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLG-IGRSVLIVDEVHAYDTYMNGLLE 466 + + + + T+ Q L ++ + +R + + +S+L+ DE+ + L Sbjct: 375 YKLAAENWDCPVVFTTMVQFLETLFRGGNSRVRRMHMLAKSILVFDEIQSLPIKCTHLFC 434 Query: 467 AVLKAQADV-GGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRF 525 L + G + +L +AT P + L GL ++ A+ Sbjct: 435 NALNFLVEQAGSTAVLCTATQPTLDRLSSLGNPGLAEKG-------------ELHMAENS 481 Query: 526 DLLAHPEQLPPRFS-IQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCY 584 +L++ L + + + + + ++ N A+ + Sbjct: 482 ELVSDKTSLFDDLRRVSIRNLSRPGGWSKEEIGDLALKRLEDFGNCLVVVNTKTWAKRLF 541 Query: 585 QRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDV 644 + +V L + R+E +S K + ++TQ++E +DV Sbjct: 542 EYCSSETEAEVTFHLSTGQ-CPAHRKE----CLSVIRKRLIEGKRVLCISTQLIEAGVDV 596 Query: 645 DFDWLITQHCPADLLFQRLGRLHRHH--RKYRPAGFEIPVATILLPDGEGYGRHEHIYSN 702 DF +I D + Q GR +RH R + V+ + P E + I Sbjct: 597 DFGAVIRFIAGLDSIAQAAGRCNRHGELRDFEGVPMMGDVSIVN-PSEEKISTLKDILIG 655 Query: 703 VRVMWRTQQHIEELNGA 719 +T++ + E Sbjct: 656 QE---KTKRILSEYKEE 669 >UniRef50_Q9KFY4 BH0336 protein n=2 Tax=Bacillus RepID=Q9KFY4_BACHD Length = 800 Score = 225 bits (572), Expect = 9e-57, Method: Composition-based stats. Identities = 146/867 (16%), Positives = 277/867 (31%), Gaps = 122/867 (14%) Query: 48 LQNTFCRNEMLSKQRVKAW----LLFFIAL-HDIGKFDIRFQYKSAESWLKLNPATPSLN 102 L+ C + L++ + L HD+GK+ F K P Sbjct: 16 LKEHLCGVQCLAETFGAKLRLQHVAGLAGLLHDLGKYTNEF--KDYIYKAVFEPEL---- 69 Query: 103 GPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGF 162 + + + +H AG Q + + H A+ HH Sbjct: 70 --AEKKRGQVDHSTAGGRLLYQ----------MLHDRENSFHEKLLAEVVGNAIISHHSN 117 Query: 163 ILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEA--------LFLTPAGLSINDIP 214 + + L + + A E + + D Sbjct: 118 LQDYISPTIESNFLTRVLEKELPEYESAVERFFQEVMTEAELARYVAKAVDEIKQFTDNS 177 Query: 215 PDCSSLLA----GFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLEL 270 P S L AD + T E+ P+ L ++ + + L Sbjct: 178 PTQSFFLTKYIFSCLIDADR--TNTRMFDEQAREEEPTQPQQLFEHYHQQLLN-----HL 230 Query: 271 SGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWK 330 + L + + ++ L Q A+ + G+ + PTG GKT +L YA K Sbjct: 231 ASLKESDSAQKPINVLR----SAMSEQCESFAMRPS-GIYTLSIPTGGGKTLASLRYALK 285 Query: 331 LIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRA 390 + +I+ +P + L N++ H N + + Sbjct: 286 HAQEYNKQRIIYIVPFTTIIEQNAQEVRNI---LGDDENILEHHSN---------VVEDS 333 Query: 391 ITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGL-GIGRSVL 449 QE+ + + L + + I T+ Q L +R R L + SVL Sbjct: 334 ENGDEQEDGVITKKERLRLARDN-WDRPIIFTTLVQFLNVFYAKGNRNTRRLHNLSHSVL 392 Query: 450 IVDEVHAYDTYMNGLLEAVLKAQADV-GGSVILLSATLPMKQKQKLLDTYGLHTDPVENN 508 I DEV T L L + S++L +AT P N Sbjct: 393 IFDEVQKVPTKCVSLFNEALNFLKEFAHCSILLCTATQPT-----------------LEN 435 Query: 509 SAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGA 568 + L+ R Q ++ + +P+ + + E + A + Sbjct: 436 VKHSLLKDRDGEIVQNLTEVSEAFKRVEILDKTDQPMT------NERLAEWVRDEAPSWG 489 Query: 569 QVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNV 628 +I N V + Y++L+ + + R+++ + + + K Sbjct: 490 STLIILNTKKVVKDLYEKLE---GGPLPVFHLSTSMCAAHRKDQLDEIRALL----KEGT 542 Query: 629 GRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLP 688 I V TQ++E +DV F +I D + Q GR +RH + + I A L Sbjct: 543 PFICVTTQLIEAGVDVSFKCVIRSLAGLDSIAQAAGRCNRHGEEQLQYVYVIDHAEETLS 602 Query: 689 DGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGN 748 + + I N V+ R ++ E+ G +L A R++ Y + + +V Sbjct: 603 KLKEIEVGQEIAGN--VLARFKKKAEKYEG-NLLSQAAMREYFRYYYSKMDANLNYFVKE 659 Query: 749 GMDKFESAECEKRFKARKVLQWAEEYS-------LQDNDETILAVTRDGEM--SLPLLPY 799 +DK + + + ++ + L + +T R + + ++PY Sbjct: 660 -VDKDMTKLLMSHAVENSYVTYYQKNTGTHFPLLLNGSYKTAADHFRVIDQNTTSAIVPY 718 Query: 800 VQTSS-GKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQN 858 + QL G+ +DLS + + VN+ + + ++G + + Sbjct: 719 GEGQDIIAQLNSGEWVDDLS--KVLKKAQQYTVNL----YSQEIDQLKKEGAIV----MH 768 Query: 859 LDGWV------WQGNSIVITYTGDEGM 879 LDG V W + + + G+ GM Sbjct: 769 LDGMVYELKESWYSHQYGVDFKGEGGM 795 >UniRef50_A0LDG1 Metal dependent phosphohydrolase n=2 Tax=Proteobacteria RepID=A0LDG1_MAGSM Length = 829 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 131/787 (16%), Positives = 245/787 (31%), Gaps = 119/787 (15%) Query: 29 YHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIAL-HDIGKFDIRFQYKS 87 H VAA L +F L + L HD+GK+ FQ Sbjct: 21 AHLYGVAA-----------LARSFAGKVGLP------LTGELMGLLHDLGKYSAAFQDYI 63 Query: 88 AESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYE 147 + K++P + + PS + K +H AG D +P Sbjct: 64 RSNLGKMDPDGDAPSAPSAKG--KVDHSTAGAQLLW----------DHLLEQPKSPTAQR 111 Query: 148 SWFPWVE-AVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPA 206 F +E + HHG ++ D P A +K ++ + L P Sbjct: 112 MLFQIMELCIASHHGGLMDCLTADP---NHPTRNAHRQRMEKDKQQTHLPQLLPHVDAPL 168 Query: 207 GLSINDIPPDCSSLL---AGFCSLADWLGSWT-------TTNTFLFNEDAPSDINALRTY 256 I + D L A + SL GS T FLF+ +D + Sbjct: 169 HQRIQQLLADPQLLESFTARYKSLC-RAGSPTVVHFRFGLLTRFLFSSLLDADRLDSAEF 227 Query: 257 FQDRQQDASRVLELSGLVS-----NKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTV 311 + +++D L + + N + A G Sbjct: 228 EEPKRRDNRLSLGSAQWPALIQRLEAELCSYDRTSAVNAIRHTIADHCQSAANRPRGTYT 287 Query: 312 IEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASAS-HLFSSPNL 370 + PTG GKT +L +A Q D + + +P + + H ++ Sbjct: 288 LTVPTGGGKTLASLRFALHHAQQHKMDHIFYIIPFTTIIDQNAQTIRRILEPHPLPEGSV 347 Query: 371 ILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLIS 430 +L H ++ + W ++ + + + + T+ Q L + Sbjct: 348 VLEHHSNL---------------------SEERLTWQNKLASENWDRPVVLTTMVQFLET 386 Query: 431 VLPVKHR-FIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQAD-VGGSVILLSATLPM 488 + R R + SVLI DE+ A L + G +V+L SAT P Sbjct: 387 LFGGGTRGARRMHHLANSVLIFDEIQALPLKCTHLFNNAINFLQQQCGATVLLCSATQPH 446 Query: 489 KQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLA 548 + +L+ + +QL L Sbjct: 447 LHCVN--------------------ETKGAIQREANHELMPNAQQLFKDLKRVQVKSHLH 486 Query: 549 DMLPDLTMLERMIAAANAG-AQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHAR--FT 605 LT + ++ ++ N ++ +Q ++ L+H Sbjct: 487 AGELSLTAIAQLAQTEQQRAGSCLVVVNTKKQSRALFQLCQKSGVDG----LYHLSTDMC 542 Query: 606 LNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGR 665 + R+ + + ++TQ++E +DVDFD +I D + Q GR Sbjct: 543 QHHRKTIFKEIRQRL----DTQQPTLCISTQLIEAGVDVDFDGVIRFAAGLDSIAQAAGR 598 Query: 666 LHRHHRKYRPAGFEIPVATILLPD--GEGYGRHEHIYSNVRVMWRTQQHIE------ELN 717 +RH + RP G +++P E R + I + + R + ++ E + Sbjct: 599 CNRHGK--RPMG----TLHVVMPTQAQENLSRLKEIETAKKDFQRMDKEMQNDPADLEHD 652 Query: 718 GASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQ 777 +L + Y + Y+++ + ++ + + E + Q Sbjct: 653 LLTLKAMERYYTYKYGHYNNSMYEYLSYIIDRRQVGRDDTLLSILSDHEKANIKGEATHQ 712 Query: 778 DNDETIL 784 D+ +T+L Sbjct: 713 DDKKTVL 719 >UniRef50_A5V1C0 CRISPR-associated helicase, Cas3 family n=1 Tax=Roseiflexus sp. RS-1 RepID=A5V1C0_ROSS1 Length = 904 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 117/731 (16%), Positives = 215/731 (29%), Gaps = 113/731 (15%) Query: 15 SKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIAL- 73 + + L+ H A L F L + L + L Sbjct: 90 AHRRERDGKEQSLVDHLKGTA-----------ELAKRFAGKIGLPE------LGEVMGLA 132 Query: 74 HDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLG 133 HD GK FQ + NP ++ K +H AG + G Sbjct: 133 HDFGKASKEFQDYLKSATGLKNPDEDDYIDYESRKG-KIDHSTAGAQLVYEKCSHLGKEG 191 Query: 134 DFFSFFDAAPHPYESWFPWVEAVTGHH-GFILHSQDQDKSRWEMPASLASYAAQDKQARE 192 +F + F A+ HH G I + + + +AR Sbjct: 192 EFLAQF------------LALAIASHHSGLIDCLTPTGEDNFSRRITKDDSVTHVSEARG 239 Query: 193 EWISVLEALFLTPAGLSINDIPPDCSSL--------------------LAGFCSLADWLG 232 + + + L T + SL L AD L Sbjct: 240 KLPEIEDGLNKTLTLDILKQFMQKLQSLREQNDSKETIAFKLGILARFLLSCLLDADRL- 298 Query: 233 SWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQ 292 T F N S N + + + + + + EG A + Sbjct: 299 -NTADFEFPENSVIRSYGNYVS--WDMLIERLEKTFNEFA-QAVAQTKEGSQAREVYQLR 354 Query: 293 PRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANA 352 + + +A G+ + PTG GKT +L +A D V + P + Sbjct: 355 SQVARACREAATKPKGIYQLTVPTGGGKTLASLRFALHHAKHHGMDRVFYVAPYITIIDQ 414 Query: 353 MLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNK 412 + ++L H ++ E + W Sbjct: 415 NADTLRTILEPESERGRVVLEHHSNFVP-----------EEDTHRRHSLLAENWD----- 458 Query: 413 KVFLGQIGVCTIDQVLISVLPVKHRFIRGLG-IGRSVLIVDEVHAYDTYMNGLLEAVLKA 471 I T Q L ++ R R + + ++V+I+DEV + +L L+ Sbjct: 459 ----APIVCTTQVQFLEALFGAGTRDTRRMHQLAKAVIILDEVQTVPIRIVHMLNVALRF 514 Query: 472 QAD-VGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAH 530 A G +V+L +AT P + P +R + Q ++ + Sbjct: 515 LAHSCGSTVVLCTATQPPLDR-------------------LPDNPYRSLIVKQEQRIILN 555 Query: 531 PEQLPPRF-SIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKE 589 +L ++ + + +++ A ++ V ++ N +A+ Y+++K Sbjct: 556 EVELFKSMQRVEVHYARKDGGMTNDEIVDLAGRALDSEGSVLIVVNTRAMARTLYEQIK- 614 Query: 590 LNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWL 649 R V++ + I V+TQ++E +D+DF + Sbjct: 615 -VRRLAPTYHLSTNMCPAHRM----DVLNTIKEKLAAKEPVICVSTQLIEAGVDIDFGAV 669 Query: 650 ITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRT 709 I D + Q GR +RH + P I+ P E + I + Sbjct: 670 IRSLAGLDSVAQSAGRCNRHGLRATPGK-----VWIVNPQEEDIDQLLDIKIGRD---QA 721 Query: 710 QQHIEELNGAS 720 Q+ + E + Sbjct: 722 QRVLSEFKSGN 732 >UniRef50_C6QNG5 CRISPR-associated helicase Cas3 n=1 Tax=Geobacillus sp. Y4.1MC1 RepID=C6QNG5_9BACI Length = 827 Score = 223 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 97/512 (18%), Positives = 197/512 (38%), Gaps = 58/512 (11%) Query: 289 NGYQPRQLQVLVDALP------VAPGLTVIEAPTGSGKTETALAYAWKLIDQ-----QIA 337 NG++ R V+++ + L + APTG+GKT +L+ A K +Q Sbjct: 266 NGWRNRMYNVVMERIEELFKTKPEQRLFTLTAPTGAGKTLLSLSVALKWREQTERQHGYT 325 Query: 338 DSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQE 397 +I+ALP + + + S L H N + + S E Sbjct: 326 PKIIYALPFTSVIDQNEKVIRDLLSQLAD------FHANEQRYLVKHHHLSTFQYRTENE 379 Query: 398 EAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLG-IGRSVLIVDEVHA 456 E ++ L++S + ++ V T Q+ +++ ++R ++ I S++I+DE+ Sbjct: 380 ELPLRKALLLTESWE----AELIVTTFVQLFHTLIGYENRALKKFHQIAGSIIILDEIQN 435 Query: 457 YDTYMNGLLEAVLKAQADVG-GSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLIN 515 LL +VL A++ ++LL+AT P+ + G + +E+ P+ Sbjct: 436 VPMEYWPLLRSVLYKMAELFSCKILLLTATQPLIFPE------GETVELLESELVKPIDF 489 Query: 516 WRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICN 575 ++ + + L P +E G I N Sbjct: 490 FKEMERVELHWLGGDKGAYSP-----------------AEWMELFQNRFEDGKTYLAIFN 532 Query: 576 LVDVAQVCYQRLKE-LNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVA 634 + + Y+ +KE L D+ +R+ + R+ K ++++ Sbjct: 533 TIKTSIEIYEGIKEWLKERGYDVIYLSTNIVPCERKRRIERIRQLL----KEKKKVVVIS 588 Query: 635 TQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYG 694 TQVVE +DVDFD + P D + Q GR +R+ + + E+ I + EG Sbjct: 589 TQVVEAGVDVDFDVVYRDLGPIDSIVQAAGRCNRNGKLH-----ELGKVYITPMEREGKL 643 Query: 695 RHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFE 754 +++Y V ++ + + + F D Q+ + D + + + M++ + Sbjct: 644 ESQYVYKGVH-TNIAKEVLPKTPVSEHQFFDIIMQYFTEVRGKKSFDASDGIISAMEELK 702 Query: 755 SAECEKRFKARKVLQWAEEYSLQDNDETILAV 786 +K ++ ++ E+ L +N + V Sbjct: 703 FDAKDKSG-SKNKPKYVSEFQLIENAHQAVDV 733 >UniRef50_UPI00018510E1 hypothetical protein Bcoam_15151 n=1 Tax=Bacillus coahuilensis m4-4 RepID=UPI00018510E1 Length = 808 Score = 223 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 123/744 (16%), Positives = 225/744 (30%), Gaps = 95/744 (12%) Query: 55 NEMLSKQRVKAWLLFFIA-LHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFN 113 E + ++ + LHD+GK+ FQ E+ N + + Sbjct: 28 AENMGEKLGVKHIAGLAGMLHDVGKYSGEFQNYIIEAVE---------NPENPPKRGSVD 78 Query: 114 HGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHH----GFILHSQDQ 169 H AG D + + + HH F + Sbjct: 79 HSTAGGKLLY----------DLLHVTNIRQYTGILAEIVGNVIISHHSYLKDFFNSELES 128 Query: 170 DKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLAD 229 D + L + + + IS E FL S N++ D Sbjct: 129 DYLKRVRDKELPQFELTKRIFFNQVIS--EEEFLAYVEKSSNELK---------LFLQKD 177 Query: 230 WLGSWTTTNTFLFNEDAPSDI--NALRTYFQDRQQDASRVLELSGLVSNKR---CYEGVH 284 S T+ F+F I +A RT + +++ + + + L+ + + + Sbjct: 178 --SSKTSEFKFMFLTKMIFSILIDADRTNTRLFEENKQYIQQENSLLFSTYYNSLMKKIQ 235 Query: 285 ALLDNGYQPRQLQVLVDALPV--------APGLTVIEAPTGSGKTETALAYAWKLIDQQI 336 A N ++ + L + L + G+ + PTG GKT +L YA K Sbjct: 236 AFNSNSHKISPINTLRNELSEQCDAFAEKSSGIYTLSIPTGGGKTFASLRYALKHAKLYD 295 Query: 337 ADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQ 396 +I+ +P + + N++ H N + + + Q Sbjct: 296 KKRIIYVVPYTTIIEQNAEEIRKILQD---NENILEHHSNVVDDLDDNDEDQDGLMSRSQ 352 Query: 397 EEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGL-GIGRSVLIVDEVH 455 + + K + I T+ Q L R IR L + SV+I DEV Sbjct: 353 K----------LKYAKDNWDSPIIFTTMVQFLDVFYAKGSRNIRRLHNLCESVIIFDEVQ 402 Query: 456 AYDTYMNGLLEAVLKAQADVG-GSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLI 514 T+ L L D G S+IL +AT P + + L Sbjct: 403 KVPTHCVSLFNNALNFLKDYGQSSMILCTATQP-----------------ALDFVEHKLS 445 Query: 515 NWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLIC 574 ++ D + + I D L + + +I Sbjct: 446 INNDAEIIEQIDDVVEKFKRTEIIDIATSESFTEDKLSKF-----IGEQLIKSKNILIIL 500 Query: 575 NLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVA 634 N + Y+RLKE + V I R+ V + K I ++ Sbjct: 501 NTKKAVKRLYERLKE-THLNVPIYHLSTSMCAAHRKTILEIVRAQL----KEGKQLICIS 555 Query: 635 TQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYG 694 TQ++E +D+ F+ +I D + Q GR +RH + + L + Sbjct: 556 TQLIEAGVDISFECVIRSLAGLDSIAQAAGRCNRHGELEVGRVYVVDYCEENLDRLKEIS 615 Query: 695 RHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFE 754 + I + V T G + A ++ Y D ++ + Sbjct: 616 VGKQISRKIFVDLNTDTT---SYGGHVLSTKAMARYFQEYYLHFSADLNYYIPKFKKEMT 672 Query: 755 SAECEKRFKARKVLQWAEEYSLQD 778 + +R + ++++ D Sbjct: 673 NLLMGERRDNSYRKAFIHKFNIPD 696 >UniRef50_UPI00016C5613 CRISPR-associated helicase Cas3 n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5613 Length = 647 Score = 223 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 94/415 (22%), Positives = 161/415 (38%), Gaps = 63/415 (15%) Query: 294 RQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAM 353 + Q + L ++ AP G+GKT A + + Q+ + V+F PT+ATA Sbjct: 160 NEFQNQCETLSAR---ALLLAPCGAGKTLAAWRWIAGRVKQRPVNRVLFLYPTRATATEG 216 Query: 354 LTRMEASASHLFSSPNLILAHGNS--RFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSN 411 + A + L HG + N +F RA + + Q Sbjct: 217 FKDYVSWA----PEADAALMHGTAGYDLNGMFAVEDPRAKKAFTTTDPRLFALQ------ 266 Query: 412 KKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKA 471 + +I T+DQ + + SV++VDEVH++D M A+L Sbjct: 267 --HWPKRIVSATVDQFFGFMAYGYGPMCLLPVLADSVIVVDEVHSFDRSMFS---ALLGF 321 Query: 472 QADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHP 531 + V+ ++ATLP ++++L+ ++P ++ Sbjct: 322 LSAFDVPVLCMTATLPEPRQKQLVAAGLTLSNPRPDDLK--------------------- 360 Query: 532 EQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQ-VCLICNLVDVAQVCYQRLKEL 590 +I P + + + +R+ AA +G + V + N V AQ RL +L Sbjct: 361 -------TIADTPRYRVARVNEREVEDRIRAAVGSGKRRVLWVVNQVSRAQAIAARLTDL 413 Query: 591 NNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLI 650 + + +H+RF L+DR ++ + + V TQV E SLD+D D L+ Sbjct: 414 SLSP---ICYHSRFKLDDRVKRHQETVKAIRAG---EPAAVAVTTQVCEMSLDIDADLLV 467 Query: 651 TQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRV 705 T+ CP L QR+GR R + G I P E +YS+ + Sbjct: 468 TEACPITSLIQRMGRCRRGRDEVTSKG--PGEVLIYAP------AKERVYSSDDL 514 >UniRef50_C4V2W5 CRISPR-associated helicase Cas3 n=2 Tax=Selenomonas RepID=C4V2W5_9FIRM Length = 814 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 121/834 (14%), Positives = 248/834 (29%), Gaps = 136/834 (16%) Query: 49 QNTFCRNEMLSKQRVKAW----LLFFIA-LHDIGKFDIRFQYKSAESWLKLNPATPSLNG 103 ++ R L K+ L + I LHD+GK F W + +P S G Sbjct: 21 EDHLLRVGNLMKEDAARLGLSSLAYLIGVLHDLGKCTAEFAEYLD--WCRKHPGDYSRRG 78 Query: 104 PSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFI 163 + +H AG + + HH + Sbjct: 79 -------EVDHATAGGQLL------------LVQYGRKNADYRFVAEIASLVIFSHHTGL 119 Query: 164 LHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPA----------GLSINDI 213 L+ QD + E L D +R + + + D Sbjct: 120 LNYYGQD-GKDESSDFLRRNDKADILSRVDLKYFFSEVIAEEELNRIFEQSIYEIVDLDA 178 Query: 214 PPDCSS--------------------LLAGFCSLADWLGSWTTTNTFLFNEDAPSDINAL 253 C+ LL AD L S ++ + + Sbjct: 179 KIACAVHCSDDEMSEAYCFYWGMVHKLLLSMLIDADRLDSAEFELDRPLTDEWET--AEI 236 Query: 254 RTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIE 313 F D+ + +L+G K A + + + A PG+ + Sbjct: 237 WASFSDKLEC-----KLAGFSLPKEPKAKKIAQ----LRKKISDDCLKAAEEEPGIFRLC 287 Query: 314 APTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILA 373 PTG GKT ++ +A + + +I +P + + + + +F IL Sbjct: 288 VPTGGGKTLASMRFALQHAQRYQKKRIIVVIPYTSIIDQNVKEIRD----IFRVDEAILE 343 Query: 374 HGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLP 433 H ++ G++ + + L++ I T Q L ++ Sbjct: 344 HHSNVI-----------TEADGEDTESMDWRRILTERWDV----PIIFTTQVQFLNTLFA 388 Query: 434 VKHRFIRGLG-IGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVG-GSVILLSATLPMKQK 491 + IR + + S++I DE+ L A + D + +L +AT P +K Sbjct: 389 GGNSSIRRMNSLQDSIVIFDEIQTLPVRCTFLFNAAMNFLKDFCRITAVLCTATQPPLEK 448 Query: 492 QKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADML 551 +N + + + E+ F C D Sbjct: 449 LD-----------------------VSINLSDNAAMTSDIEKTFEGFERVDVENCYRDGG 485 Query: 552 PDLTMLERMI-AAANAGAQVCLICNLVDVAQVCYQRLKE---LNNTQVDIDLFHARFTLN 607 + I + V I NL A+ YQ + E L++ ++ I + Sbjct: 486 WSAEEIASEICKSVEEIGDVLCIVNLTKKAKEIYQAVSEKIQLSDKEIQIVHLSTKMCSA 545 Query: 608 DRREKENRVISNFGKNGKRNVGR-ILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRL 666 R+ + + R + ++TQ++E +DV F + + Q GR Sbjct: 546 HRKATLKELRRALAERKNHPEKRLVCISTQLIEAGVDVSFPVVYRALAGFSSIAQAAGRC 605 Query: 667 HRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDA 726 +RH + A L + ++I + + + ++ P Sbjct: 606 NRHGEMEKGIVRVFECADENLDHLKDIRHGKNI---------ARVMLYDRAANTILSPSI 656 Query: 727 YRQWLDSIYD-------DAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDN 779 +++ Y + + + + + + + ++ + + + +D Sbjct: 657 MQEYFRRFYAGRTGKEMRYPLSTQNTIFDLLSGNSAGVQARMGRGDRISSYFRQ-AFRDA 715 Query: 780 DETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNV 833 + + D L+PY D ++++ S +Q ++ VN+ Sbjct: 716 GRSFTVI--DSHSEAVLVPYAGGKDMIVAFDDRIFDRKSIGKQMKSAQQYMVNL 767 >UniRef50_C9M4Z3 CRISPR-associated helicase Cas3 domain protein n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M4Z3_9BACT Length = 810 Score = 221 bits (564), Expect = 6e-56, Method: Composition-based stats. Identities = 135/849 (15%), Positives = 266/849 (31%), Gaps = 149/849 (17%) Query: 70 FIAL-HDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLS 128 + HD+GK + E + + + S + + ++ + Sbjct: 59 LAGMYHDLGKSA----CQWQEYLRVQDYDESASSESSEDEDKDDDKKKNPIHKVSHSEAG 114 Query: 129 EQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDK 188 ++ + F P+ A+ GHH + + + + + Sbjct: 115 AAAVLEGFWDNWDEPNVSGPLTGLAYAIAGHHAGLADWRTGGRGALINRLATKNGDLDVS 174 Query: 189 QAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLA--------DWL-------GS 233 + L G D P + L S+A WL GS Sbjct: 175 RLLNPLRQAL------GTGARQVDYPAE----LTRLDSVALNLNEEIRQWLEKWFADDGS 224 Query: 234 WTTTNTFL-----FNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLD 288 +L A D ++L T R A++ + K ++ + Sbjct: 225 EDVPREYLNLWVRMLYSALVDADSLDTERFCRPDQAAQRSRQFDMQDLKHRFDSYMDEKE 284 Query: 289 NGYQPRQLQVLVDAL--------PVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSV 340 + + + + PG + PTG GKT +LA+A + + Sbjct: 285 RLAEKSPVNEVRSKVLGWCRQAGHCEPGFFQLTVPTGGGKTLASLAFALEHCLTNGRRRI 344 Query: 341 IFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAW 400 I+A+P + ++ + +F +L H ++ E+ + Sbjct: 345 IYAIPYVS----IIEQTADVLRGIFGDTGAVLEHHSNIL------------PERETLQNK 388 Query: 401 VQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRG-LGIGRSVLIVDEVHAYD- 458 + W I V T Q+ S+L + R I RSV+I+DE Sbjct: 389 LAAENWD---------APIVVTTNVQLFESLLSDRRVLCRKIHNISRSVIILDEAQMLPL 439 Query: 459 TYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRG 518 +M G+L + G +V+L +AT P + E P Sbjct: 440 QHMRGVLSVLKGLVKHFGVTVLLCTATQPALTRTFSDGQNVSFPGLPEPRQIVP------ 493 Query: 519 VNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVD 578 GA + L E + QP + + +V + N Sbjct: 494 -AGADLYQKLLRAEWVRDYNPTQPRT------------WDELADDLLKHQRVLAVVNRRG 540 Query: 579 VAQVCYQRLKELNNTQVDIDLFH--ARFTLNDRREKENRVISNFGKNGKRNVGRILVATQ 636 + Y+ +K + LFH A R ++ + + + +++TQ Sbjct: 541 DCRELYEVIKSRSGEN----LFHLSADMCPQHRSDRIGEIKALLKDESRTVR---VISTQ 593 Query: 637 VVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRH 696 ++E +D+DF + C D Q GR +R L G+ Y Sbjct: 594 LIEAGVDIDFPVVFRALCGLDSAVQAAGRANREG-----------QLNKLGKLGQLYLFS 642 Query: 697 EHIYSNVRVMWRTQQH----IEELNGASLFFPDAYRQWLDSIYDD-AEMDEPEWVGNGMD 751 S V ++ + +Q + + LF P +++ + +Y D D+ ++ ++ Sbjct: 643 PMKPSPVGLLLKGEQTFKAMLGQKTEFDLFCPSVIKEYFNRLYRDVGTFDQSKYYELLVE 702 Query: 752 KFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDG 811 E E + R + ++ + D++ G G +L+ G Sbjct: 703 NAECFEFQFR-------TFGRDFHMIDDEGRQSVFVAYGA-------------GAELI-G 741 Query: 812 QVYEDLSHEQQYEALALNRVNVPFTWKRS--FSEVVDEDGLLWLEGKQNLDGWVWQGNSI 869 ++ + ++ Q AL V++P + + +S VDE +G+ Q + Sbjct: 742 ELKRNGANPQLLRALQRYSVSIPESKLKELRYSGAVDE----------TDEGYFVQSEA- 790 Query: 870 VITYTGDEG 878 Y + G Sbjct: 791 -FVYDLETG 798 >UniRef50_A6LJX0 CRISPR-associated helicase Cas3 n=1 Tax=Thermosipho melanesiensis BI429 RepID=A6LJX0_THEM4 Length = 651 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 122/675 (18%), Positives = 226/675 (33%), Gaps = 116/675 (17%) Query: 74 HDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLG 133 HDIGK FQ + +K+ H G Y L Sbjct: 73 HDIGKLTDEFQEGLIKGKIKVT------------------HSDVGFYTI------ATLLT 108 Query: 134 DFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQD--KSRWEMPASLASYAAQDKQAR 191 D + + F V+ HH + E + + Sbjct: 109 DKLLSENLKKDEFLFLFFLSTVVSRHHSVLFDIDKVITWNENKEKFVKDILENIETINDK 168 Query: 192 EEWISVLEALFLTPAGLSINDIPPDCS--SLLAGFCSLADWLGSWTTTNTFLFNEDAPSD 249 E + + +F L I L+ +D+L T F + Sbjct: 169 GEIVKKTKQVFEKIKQLKIYKKIEFYILYKLINSLLITSDYLA------TLEFMKGVEIS 222 Query: 250 INALRTYFQDRQQD--ASRVLELSGLVSNKRCYEGVHA-LLDNGYQPRQLQVLVDAL--- 303 INA+ + + +SR +E + ++ + A +N L+ ++ A Sbjct: 223 INAIDKTLKKAILENISSRNIEGNFNPYIDENFDRLKAMKKENISDINTLRSVMAARVEE 282 Query: 304 ---PVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEAS 360 + IE PTG GKT +L +L++ + V + +P Sbjct: 283 KFKNSNKKVFFIEIPTGGGKTNISLRLISRLLENKK--KVFYVIPFINIIEQNFEYFSKF 340 Query: 361 ASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIG 420 +R++H + ++ E Q L + VF +G Sbjct: 341 IPK----------EHITRYDHKYLNV-------TDDENKEKTFTQMLFLNFPFVFSTHVG 383 Query: 421 VCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQ-ADVGGSV 479 D + F + + SV+++DEV AY+ L + + ++ Sbjct: 384 F--FDMFFRNGKSDNFNFYQ---LANSVVVLDEVQAYNPKFWNTLSNLFYYLSKYLNTTI 438 Query: 480 ILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFS 539 I++SATLP K ++ D++ H Sbjct: 439 IIMSATLPDFTK---------------------FVDKGSFVEDLSPDVVEHK-------- 469 Query: 540 IQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDL 599 + + + T E+++ N +V ++ N V + Y+ L++ N +I L Sbjct: 470 -IFNRVNTLFLKENHTFEEKVLEEINESKKVLIVVNTVKKSYEIYENLEDKING--EIYL 526 Query: 600 FHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLL 659 ++ TL D R+KE + ++ K+ + ILV+TQ +E +D+DFD D + Sbjct: 527 LNS--TLLDIRKKE---LIDYIKSYDKEKPLILVSTQSIEAGVDLDFDVGFRAFSILDSI 581 Query: 660 FQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGA 719 Q +GR++R+ R R AT+ L D G + IY + +++ + Sbjct: 582 IQTMGRVNRNARLSR--------ATLYLFDD---GMWKKIYGSDVRKKILEENFSKFKNG 630 Query: 720 SLFFPDAYRQWLDSI 734 SL D Y ++++ Sbjct: 631 SLTLKDFYMLTIENL 645 >UniRef50_UPI000190E95D hypothetical protein SentesTyph_16158 n=2 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI000190E95D Length = 281 Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 96/261 (36%), Positives = 130/261 (49%), Gaps = 22/261 (8%) Query: 453 EVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVE----NN 508 EVHAYD YM LLE +L+ A GGS I+LSATLP ++KLL+ + + + +N Sbjct: 1 EVHAYDGYMVKLLEGLLRFHAAQGGSAIILSATLPAALREKLLNAFSDGAEFMSAGGSDN 60 Query: 509 SAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGA 568 + YP ++ +G L PE + + + L+ + G Sbjct: 61 AGYPWLSHLTSSGLLEQPLATRPEVQ--------RTVAVNWIQQRQEALDIIYRVVATGQ 112 Query: 569 QVCLICNLVDVAQVCYQRL-KELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGK-- 625 +C I N VD A YQ+L E + D+ LFH+RF DR EN+ ++ FG N Sbjct: 113 CICWIRNTVDDALDTYQQLLHEGIVPEQDLLLFHSRFAFIDRIAIENKTLNWFGNNAPVS 172 Query: 626 RNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYR-------PAGF 678 G++L+ATQVVEQSLD+DFDW+IT P DLL QR GRL RH R P Sbjct: 173 ERRGKVLIATQVVEQSLDLDFDWMITDLAPIDLLIQRAGRLQRHIRDAHGQRKSTLPDER 232 Query: 679 EIPVATILLPDGEGYGRHEHI 699 + PV I P G GR + Sbjct: 233 QPPVLHISGPSLAGAGRRGLV 253 >UniRef50_Q746C3 Hypothetical conserved protein n=2 Tax=Bacteria RepID=Q746C3_THET2 Length = 786 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 124/762 (16%), Positives = 233/762 (30%), Gaps = 140/762 (18%) Query: 15 SKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALH 74 + + H L H + L F ++ + LH Sbjct: 64 AHTPNPQGAWHALKDHL-----------EAVSRLAGGFAQHFGTP-----SLGQALALLH 107 Query: 75 DIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGD 134 D+GK FQ +LK+ N H G Sbjct: 108 DLGKATRDFQA-----YLKVAAEGKRTN--------SVPHAVWGAA-------------- 140 Query: 135 FFSFFDAAPHPYESWFPWVEAVTGHH-GFILHSQDQDKS----RWEMPASLASYAAQDKQ 189 ++ +E W + V GHH G + K + E +A++ + Sbjct: 141 -LAYVALGSGQHEGWEAFGLPVMGHHAGLPKRGEAASKLAQALKEEPFKEVAAFLRSSEL 199 Query: 190 AREEWISVLEALFLTPAGLSINDIPPDCSSLLA-GFCSLADWLGSWTTTNTFLFNEDAPS 248 + EAL + + + + D +A AD+L T + Sbjct: 200 RTRLEGLLNEALKEVRSKTAGDPLRLDFLVRMAFSALVDADYL--DTEAHFDPSVARLRQ 257 Query: 249 DINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPG 308 + +L + +D +L+ V+ + A ++PG Sbjct: 258 EGYSLEKLWARFHRDQEALLQRVRPSLVNSVRREVYE------------ACLQAAELSPG 305 Query: 309 LTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSP 368 L + PTG GKT + LA+A + + V+ A+P +++ + + Sbjct: 306 LFRLTVPTGGGKTRSGLAFALRHALKHGLRRVVVAIPY----TSIIDQTAQVYREILGEE 361 Query: 369 NLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVL 428 ++ H G+E+ Q L+ N + + V T Q+ Sbjct: 362 AVLEHHSA-------------YEPPLGEEQEENVLRQRLATEN---WDAPLVVTTTVQLF 405 Query: 429 ISVLPVKHRFIRG-LGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQA------DVGGSVIL 481 S+ + +R + RSV+++DEV + L+ A G +V+L Sbjct: 406 ESLFSNRPSKMRKVHRLARSVILLDEVQTLPPELLKPTLEALRLLATPVEEGGYGATVVL 465 Query: 482 LSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQ 541 +AT P + + ++G+ + R + Sbjct: 466 STATQPTFEV---------------------VPTFQGLPVREIVPDYPRHFARLQRVVYE 504 Query: 542 PEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFH 601 P L+ E + A QV ++ N A + L E + L Sbjct: 505 RRPKPLS--------WEELARELQARPQVMVVLNTRKDALALLEALGEDPHAYHLSTLL- 555 Query: 602 ARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQ 661 RRE V + L++TQVVE +D+DF + P D + Q Sbjct: 556 ---CPAHRREVLEEVRRRLREGAPVR----LISTQVVEAGVDLDFPEVWRAIGPLDRVVQ 608 Query: 662 RLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASL 721 GR +R R + + P+ R + + + + +EE L Sbjct: 609 AAGRCNREGRLDKGK------VVLFWPEEGTTPRGPYRVG----VEKARLLLEEHPPERL 658 Query: 722 FFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFK 763 P Y+ + ++ + D+ + + E +R++ Sbjct: 659 HDPGLYQAYFKELFTTVKTDK--GIQEHRKDLDYPEVARRYR 698 >UniRef50_C0QHV8 Putative CRISPR-associated helicase Cas3 (ATP-dependent DNA helicase) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QHV8_DESAH Length = 753 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 115/645 (17%), Positives = 211/645 (32%), Gaps = 112/645 (17%) Query: 44 QSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNG 103 LQ F HD+GK FQ + P Sbjct: 14 PDYPLQRHLSNIAASFDDDTHRKAAMF---HDLGKLSDEFQNYLND------PDHKKGTT 64 Query: 104 PSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFI 163 + + A WF L+ Q+ FFS HHG + Sbjct: 65 HALE-------SALIYLWFVNCQLTPQTFAVFFSILK------------------HHGDL 99 Query: 164 LHSQDQDKSRWEMPASLASYAAQDKQ------AREEWISVLEALFLTPAGLSINDIPPDC 217 D + L ++ R +S ++ L + + + Sbjct: 100 EDVHDFLYYKLAFSEDLLEKDPGLEEKIRVICDRASILSDIDMRNLCDGFDLDDIVRENK 159 Query: 218 SSLLAGFCSLADW----LGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGL 273 +L+ + + D + S F S T +++ +++E Sbjct: 160 LNLIQNYFLVKDVFSRLIFSDKYEAIF-----KESFSEKNETCWEEYLSRLIKLIE---- 210 Query: 274 VSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLID 333 S K + Q R + + +IEAPTG GKT +AL A ++ Sbjct: 211 -SKKNKMASIRN------QARNEILDNYRENRDKKIYIIEAPTGIGKTFSALHLALEICR 263 Query: 334 QQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITE 393 + +I ALP + + + + +L+ +F+HL +S + Sbjct: 264 DKNKKRIINALPMTSIIDQTYE----EYGLVINDDDLL------KFHHLTRSKSYGSSEG 313 Query: 394 QGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHR-FIRGLGIGRSVLIVD 452 ++E Q ++ V T +Q+ + K+R I+ + SV+I+D Sbjct: 314 DEKKETNSLGRQQNDFIAMSWSSDKVIVTTFNQLFNAFYSNKNRDLIKFWTLRDSVVILD 373 Query: 453 EVHAYD-TYMNGLLEAVLKAQADVGGSVILLSATLPMKQ----KQKLLDTYGLHTDPVEN 507 E+ A + L++ +L +++SAT+P + +K+ + ++ Sbjct: 374 EIQAVPRILIQDLIKTILYLSEHFNIDFVIMSATIPAIKNFIPSEKIAELLDNRYFSMDF 433 Query: 508 NSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAG 567 N+ Y L +N PE L +I E + Sbjct: 434 NNRYSLKIDTDINT---------PESLWSAITINYENV---------------------- 462 Query: 568 AQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRN 627 + + N ++ Y L E + ++ + F R E + + N K Sbjct: 463 NSLLCVLNTKKLSLETYNEL-EHSIDSSELFFLNTNFIPKHRSEIIRNIRNRLKNNQKT- 520 Query: 628 VGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRK 672 +LV+TQVVE +D+DFD+ I + P + Q GR++R K Sbjct: 521 ---LLVSTQVVEAGVDLDFDFGIREFAPLYSMIQTAGRVNREGTK 562 >UniRef50_A3DLC7 CRISPR-associated helicase, Cas3 family n=1 Tax=Staphylothermus marinus F1 RepID=A3DLC7_STAMF Length = 577 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 83/488 (17%), Positives = 165/488 (33%), Gaps = 90/488 (18%) Query: 289 NGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQA 348 Y R V ++++EAPTG GKT L+ A+ L + + + P + Sbjct: 15 FNYSGRDFLKHAWREVVGSNISIVEAPTGYGKT--TLSQAFTLYNLIFGFKSVISYPLRT 72 Query: 349 TANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLS 408 L + L + +++ Sbjct: 73 LLEDQLNKFRMLGEKLGLKDFVG--------------------------------SRYMG 100 Query: 409 QSNKKVFLGQIGVCTIDQVLISVLP----------------------VKHRFIRGLGIGR 446 ++ + + TID + + + + H + Sbjct: 101 HHESYYYVKPVTLTTIDTLSMCIFGLEPSELDRYLKALYIGESITSTLGHYLFSKATVLL 160 Query: 447 SVLIVDEVHAY--DTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDP 504 S +++DE H L A++ + ++L SATLP +L Y Sbjct: 161 SNIVLDETHLLADSIKSLNFLAALVIIAHNNDLKLLLESATLPDAFIHELKRVYSGINVV 220 Query: 505 VENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAA 564 + P + + D + E ++ E + A+ + Sbjct: 221 KFSEDMDP--EFVEEREKKEIDYMKPVEVGEDKYEKIMEWLMEAEK-----------NLS 267 Query: 565 NAGAQVCLICNLVDVAQVCYQRLKELNN----TQVDIDLFHARFTLNDRREKENRVISN- 619 + G + ++ N V A Y LK+ + + ++ L H+R+ DR ++ +++ Sbjct: 268 DQGLRALVVFNTVREAVEFYNYLKKYSGKIGVSNDNVILIHSRYKEKDRGDRVDKIRELS 327 Query: 620 -------FGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRK 672 K +N+ I+VATQV+E +DV + IT PA+ L QR+GR R+ Sbjct: 328 NMLKEAIKNKQDTKNIQYIIVATQVIEAGVDVSSNVFITDIAPANSLIQRMGRFLRY--- 384 Query: 673 YRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLD 732 G + I D + + +Y + ++ RT + + P YR+ ++ Sbjct: 385 ---PGEKYGYLRIWYEDLKQFKNKYKVY-DHSLVQRTLDQLIVFKTFNPHLPSKYRELIN 440 Query: 733 SIYDDAEM 740 ++Y + Sbjct: 441 NVYRIEDF 448 >UniRef50_A3J8H8 CRISPR-associated helicase Cas3 n=1 Tax=Marinobacter sp. ELB17 RepID=A3J8H8_9ALTE Length = 762 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 122/812 (15%), Positives = 244/812 (30%), Gaps = 124/812 (15%) Query: 42 WDQSVVLQNTFCRNEMLSKQRVKAWLL----FFIAL-HDIGKFDIRFQYKSAESWLKLNP 96 W + +L + LS + + F L HD+GK+ FQ + Sbjct: 19 WSEPHLLHEHLEKVAELSARFAEKCQSEGWGFAAGLWHDLGKYRSGFQMYIRD------- 71 Query: 97 ATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAV 156 ++ R+ H G + ++ + G + P + + Sbjct: 72 --------ASGFERENAHVEQGAH---SPRVTHSTAGAVHAINQWPSIPG---YILAYLI 117 Query: 157 TGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPD 216 +GHH D R + LA K+ +E + + LT A ++ D+ Sbjct: 118 SGHH---AGLPDWSGGRGSLEHRLAEAT---KEYQESLAAGVPEQLLTAAQPAVPDVARS 171 Query: 217 CSSLLAGFCSL------ADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLEL 270 S+ L AD+L T +++ E + L Sbjct: 172 LKSIALWMRILFSSLVDADFL----DTESYMSPEKVGKRNQYPQ----------LDELHS 217 Query: 271 SGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWK 330 + N + + APG+ + PTG GKT +L +A + Sbjct: 218 LFFEKMSTLQKNAEQTPLNVIRKSIFEACHREAYEAPGIFSLTVPTGGGKTLASLGFALE 277 Query: 331 LIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRA 390 Q +++A+P +++ + ++ H + + ++ SR Sbjct: 278 HAKQHGKSRIVYAIPF----TSIIEQNADVFRGFLGDTAVLEHHSSLDIDQRAENAGSRL 333 Query: 391 ITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGL-GIGRSVL 449 E + + V T Q+ S+ + R L + S++ Sbjct: 334 AAEN--------------------WDAPLIVTTNVQLFESLFASRTSRCRKLHNLVNSII 373 Query: 450 IVDEVHAYDTYMNGLLEAVLKAQAD-VGGSVILLSATLPMKQKQKLLDTYGLHTDPVENN 508 I+DE + + ++ +D G + +L +AT P G TD + Sbjct: 374 ILDEAQQVPRDFHAPITQAMQQMSDHFGVTWVLCTATQPE---------LGQQTDAFDRT 424 Query: 509 SAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGA 568 L N + P+ + +++ I L + T E + A Sbjct: 425 LHEGLSNISEI----------IPDPIGLAQNLKRVEIELPQNVDQPTTWESLAWQVANEA 474 Query: 569 QVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNF-GKNGKRN 627 +I N A+ Y+ L D A R + + Sbjct: 475 CALVIVNKRQDAKTVYELL----PDDGDTYHLSANMCAEHRSVALKEIRQKLIARRNGDT 530 Query: 628 VGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILL 687 +++TQ++E +DVDF + D + Q GR +R + +P + Sbjct: 531 TPLRVISTQLIEAGVDVDFPVVFRAMAGLDSIAQAAGRCNREGKMPQPG-----RVVVFQ 585 Query: 688 PDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVG 747 P+ + + Q +E L L P + + + Sbjct: 586 PET--------LPPPGFLRQAAQTTLELLKSGQLDDP-FSPAAMQAFFTKLNYLGNRDAH 636 Query: 748 NGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQ 807 + + + + A+++ L D+ + +P P S Sbjct: 637 GICELLHAKTSPDAPLEIQFREAAKKFRLIDDVGIGVV--------VPFCPEGHEESPVH 688 Query: 808 LLDGQVYEDLSHEQQYEALALNRVNVPFTWKR 839 + + +D S + + L V +P + Sbjct: 689 IWLAALEKDSSQKWAHRKLQRYSVTLPERLAK 720 >UniRef50_B2GD19 Putative uncharacterized protein n=1 Tax=Lactobacillus fermentum IFO 3956 RepID=B2GD19_LACF3 Length = 812 Score = 220 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 144/828 (17%), Positives = 251/828 (30%), Gaps = 131/828 (15%) Query: 40 CWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATP 99 + ++ + + LHD+GK+ + FQ Sbjct: 15 QLLREHLINAKNLAEDYGTDID-IPKVTGLAALLHDLGKYRVAFQEYIQNGVGH------ 67 Query: 100 SLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFP--WVEAVT 157 +H + G Y+ Q + + Y +WF A+ Sbjct: 68 ---------HGSVDHSSFGAYFI------HQFINEHSQAESEKDRLYLTWFGETIENAIM 112 Query: 158 GHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSIND----- 212 HH + D + +D + ++E V++ F G Sbjct: 113 SHHNSLGLKDFVDAHVNSPFLKRLNKVEEDPELKDELQRVIQRFFQEVMGEKEISDYFDQ 172 Query: 213 ------------IPPDCSSLLAGF----------CSLADWLGSWTTTNTFLFNEDAPSDI 250 D +LL+ AD T+T F+ D P Sbjct: 173 AYKEFSLLIDKCFSQDKKTLLSNLFFIETYVYSCVLDAD------RTDTATFSLDQPVKR 226 Query: 251 NALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLT 310 F+D Q +R +L+G+ S K + A+ D D G+ Sbjct: 227 YDYSAVFEDYYQKLNR--QLAGMNSEKEINQLRSAMSD---------ECDDFAEKRDGIY 275 Query: 311 VIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRM--EASASHLFSSP 368 + PTG GKT + Y K + LP R+ E + Sbjct: 276 QLSIPTGGGKTLAGMRYGLKRSILSHKKHIFGVLPLITIIEQN-ARVYRETFNGDRLDNQ 334 Query: 369 NLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVL 428 N++ H N +S K + E++W I V T+ Q L Sbjct: 335 NILEFHSNVA--QELRSNKEKDDLLDLAEDSW---------------NSPITVTTMVQFL 377 Query: 429 ISVLPVKHRFIRGL-GIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVG-GSVILLSATL 486 + R + SV+I+DEV L + +VG S++L +AT Sbjct: 378 NCIFASGTTNRRRFHNLCNSVIILDEVQKVPVKCLSLFNKAINFLKEVGHCSILLCTATQ 437 Query: 487 PM--KQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEP 544 P K L + D + + + + + R IQ P Sbjct: 438 PALGDLKASLKIDGEIIQDLSQRQEDFKRVKFTDLT----------------RQGIQEHP 481 Query: 545 ICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARF 604 I + E + N ++ +I N + + L + + R Sbjct: 482 IS------SQELAELITYKFNDSQRILVILNTIGAVNQLAENL-DSGQLNCKVYALTTRM 534 Query: 605 TLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLG 664 R++ + + + I V+T ++E +D+ F+ + C D + Q G Sbjct: 535 CAAHRQKLIKEIKDRLA----QKLPTICVSTPLIEAGVDISFETVYRSVCGLDSIVQAAG 590 Query: 665 RLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFP 724 R +R+ + R + +L D E + I +++ ++ + SL Sbjct: 591 RCNRNGERDRGDVY----LVLLNKDSEKLDKLREIKWGQKIVLNMLAQ-KDFDPDSLLQT 645 Query: 725 DAYRQWLDSIYDDAEMDEPEWV---GNGMDKFESAECEKRFKARKVLQWAEEYSLQ--DN 779 + D Y + + E G D + E + +R LQ L+ Sbjct: 646 KVINNYFDHFYQEIDQSELSGYPTSDEGRDIHLADYIEGKQASRDYLQQNSGSELKAFSG 705 Query: 780 DETI--LAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEA 825 ETI D E L+PY + S LL+ Q Y+D E E Sbjct: 706 SETIAKHFEVIDQETVSVLVPYGKGSDFIALLNSQNYQDSLSEIFKEV 753 >UniRef50_C3RBZ9 Crispr-associated helicase cas3 n=7 Tax=Bacteroidales RepID=C3RBZ9_9BACE Length = 741 Score = 220 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 107/633 (16%), Positives = 202/633 (31%), Gaps = 98/633 (15%) Query: 49 QNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQM 108 +F L +W LHD GK FQ P++ Sbjct: 36 AASFAGQFGLP-----SWGRALGLLHDKGKERAAFQQYIR----------KMNGLPTSDK 80 Query: 109 CRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQD 168 R +H + F L+++ +G S V + HH + + D Sbjct: 81 KRYDDH----THAFVGGILAKELMGKDVSHL------------LVNQIISHHTGLHNFGD 124 Query: 169 QDK-SRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSL 227 + + + + + + +++ F + S +L Sbjct: 125 VENILKERLLSEEINEGDISINKPLLFQEFIDSPFSKSKVEWKH--FHHLSRMLFSCLVD 182 Query: 228 ADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALL 287 AD L + + D+ + R + +L + K + Sbjct: 183 ADRL-----------DTERFMDVESWRK--RGNLATLVDLLPQLEVYMQKLQSNAADTKV 229 Query: 288 DNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQ 347 + + + Q G + PTG GKT ++L +A K + +I A+P Sbjct: 230 NRIRRQVKEQCS-RTSSSEKGFYSLTVPTGGGKTLSSLLWAMKHAVSHSMNRIIIAIPY- 287 Query: 348 ATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWL 407 +++ + +F N++ H N + + E+ +E+A + W Sbjct: 288 ---TSIIVQTAGLLKEIFGEENVLEHHSNFDPDDI--------KDEENREKAKLATENW- 335 Query: 408 SQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGL-GIGRSVLIVDEVHAYDT-YMNGLL 465 I V T Q+ S+ K R L + S+L++DEV T ++ ++ Sbjct: 336 --------NYPIIVTTNVQLFESMFSNKTSDCRKLHNMANSILVLDEVQMLPTGFLQPIV 387 Query: 466 EAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRF 525 +A+ Q G SV+ +A+ P + + + I + F Sbjct: 388 DALKAYQEMFGISVLFTTASQP---------VLSGLIEGTNPKADFKGIEHIKEIIPEEF 438 Query: 526 DLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQ 585 L ++ + + A + +V I N A+ Y Sbjct: 439 ALHDQLRRVKLAID------------DTGRTYDEIAAKVSEYNKVLCIVNTRKDAKELYD 486 Query: 586 RLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVD 645 RL + L +R + I K+G + + R+ +ATQ+VE +D+D Sbjct: 487 RL-----PNDGVKLHLSRMMCPAHLHETIGKIKTLLKDGLQPIVRV-IATQLVEAGVDID 540 Query: 646 FDWLITQHCPADLLFQRLGRLHRHHRKYRPAGF 678 F + Q D + Q GR +R R F Sbjct: 541 FPVVFRQEAGLDSVLQAAGRCNREGRSAMGHTF 573 >UniRef50_A7ZDW8 Crispr-associated helicase Cas3 domain protein n=4 Tax=Campylobacter RepID=A7ZDW8_CAMC1 Length = 733 Score = 219 bits (558), Expect = 4e-55, Method: Composition-based stats. Identities = 109/716 (15%), Positives = 236/716 (32%), Gaps = 114/716 (15%) Query: 76 IGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDF 135 +GK Q K KL ++ NH Y+F +S ++ + Sbjct: 33 LGK-----QVKLYHDIAKLKNNFQIYIRDTSNDKLDKNHSLLSAYFFLLNSKFDE-IPTL 86 Query: 136 FSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWI 195 F F A+ HHG +++ + + + D+ A Sbjct: 87 FGFL---------------AIVSHHGNVVNLMTLAREANKFFKNQKELGQWDEVAG---- 127 Query: 196 SVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTF--LFNEDAPSDINAL 253 + + +++ L L + T+ N + Sbjct: 128 AARNIKIYSGLSTKKDELLDRAEKLRQYLV-----LSQYRHKFTYEDFINFKSLYSNLIY 182 Query: 254 RTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIE 313 F+ + E + + L N + + +++ L + Sbjct: 183 SDKFEAIFGIPKQ--ESKDIPPIDVLESDIQNLPPNKKRDTFRKFVLNNFDENYKLFTLT 240 Query: 314 APTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILA 373 PTG GKT TAL +A K +I+ALP + + + + S + A Sbjct: 241 VPTGYGKTLTALNFALKF----NKSRIIYALPFTSIIDQTYDIVAKIYKN--SDILVSKA 294 Query: 374 HGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLP 433 H + + E +E ++L +S F G+I V T+ Q++ ++ Sbjct: 295 HHKTTID-----------EENLTDEDRYSKIKFLMES----FSGEINVTTLYQLIFALFG 339 Query: 434 VKHR-FIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQA-DVGGSVILLSATLPMKQK 491 K++ ++ + SV+I+DE A + + + +G I +SAT+P+ + Sbjct: 340 NKNKDNVKFNQLKNSVVIIDEAQAIPYNFRKDFILLCEIISQRLGTIFIFMSATMPVIKS 399 Query: 492 QKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADML 551 + + L D Y I D+ Sbjct: 400 ENFKEISNL--DYFSKQDRY--------------------------------VIKWLDIG 425 Query: 552 PDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRRE 611 + +LE++ AA+ ++ N + AQ + +L++ + + + +R Sbjct: 426 GEDELLEKICEAASD-KNTLVVVNTIKKAQELFTKLRD----KFSCFCLNGYMYDDHKRA 480 Query: 612 KENRVISNFGKNGKRNVGR--ILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRH 669 V K+ + +L++TQ +E +D+DFD + P + Q GR++RH Sbjct: 481 TIEAVRCAIDKSKVDPLASKILLISTQSIEAGVDLDFDIGFREVAPISSIIQTAGRVNRH 540 Query: 670 HRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQ 729 R + P + IY + + + + +L + + Sbjct: 541 FGATRGELYVFPEISKF---------TNLIYGD--LYKVSGAILSDLKQKEVRESEILE- 588 Query: 730 WLDSIYDDAEMDEPE--WVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETI 783 + ++Y ++ E + + ++K E ++ + + ++ + + +E Sbjct: 589 -ISNLYFQKISNQLENLHIKSEIEKLEFENINQKIEDIMNDNY-KQTIIIEPEENF 642 >UniRef50_A6UVX5 CRISPR-associated helicase Cas3 n=2 Tax=Methanococcales RepID=A6UVX5_META3 Length = 772 Score = 219 bits (557), Expect = 4e-55, Method: Composition-based stats. Identities = 82/473 (17%), Positives = 173/473 (36%), Gaps = 71/473 (15%) Query: 294 RQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADS-----VIFALPTQA 348 ++ V L + + + APTG GKT T +A KL ++ + +I+ LP + Sbjct: 249 YKISNKVHNLDLNQKIYTLNAPTGIGKTLTIFNFALKLSNRIKTEKNIDMKIIYCLPFLS 308 Query: 349 TANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLS 408 + + + N++L H + S + + + S Sbjct: 309 IIDQNYKVLNEVLKN--PPSNILLKHHH----------LSDVVYWHEKNGEENILDENKS 356 Query: 409 QSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLG-IGRSVLIVDEVHAYDTYMNGLLEA 467 + + +I T Q+ S+ K+ ++ + S++I+DE+ + L+ Sbjct: 357 LHLMETWSSKIITTTFMQLFYSIFSNKNSDLKKFSSLSNSIIILDEIQSIPHKYWHLVNK 416 Query: 468 VLKAQAD-VGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFD 526 + + A+ IL +ATLPM + + +++ Y + R Sbjct: 417 IFRFLAEEYNIYFILTTATLPMIFDK------NECVELLDDKEHY-------FSNLNRIK 463 Query: 527 LLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQR 586 + H E + D+ + +L+ I N ++ N + ++ Y Sbjct: 464 MKIHNEPM--------------DLTEFVGVLDEDINN-NPDKDFLIVLNTIKSSKEVYDL 508 Query: 587 LKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDF 646 LKE N + +R + ++ N N ++ + V+TQ++E +D+ Sbjct: 509 LKEYNYENTEYYYLSTNIYPKERLNRIEKINKNNKNNNRKII----VSTQLIEAGVDISV 564 Query: 647 DWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVM 706 D + P D + Q GR +RH I + L + G+ +IY N ++ Sbjct: 565 DIVYRDIAPLDSINQTAGRCNRHGEGTEQGIINI----VKLINDNGHPFSRYIY-NGALI 619 Query: 707 WRTQQHIEELNGASLFFPDAYRQWLD---------SIYDDAEMDEPEWVGNGM 750 +T++ ++ + R+ L+ YDD+ + E + + Sbjct: 620 SKTEELLKNYDEI------EERELLNINNCYFKKLKGYDDSSRELLEIIKSFK 666 >UniRef50_B8CYA2 CRISPR-associated helicase Cas3 n=1 Tax=Halothermothrix orenii H 168 RepID=B8CYA2_HALOH Length = 822 Score = 218 bits (556), Expect = 7e-55, Method: Composition-based stats. Identities = 87/437 (19%), Positives = 164/437 (37%), Gaps = 52/437 (11%) Query: 309 LTVIEAPTGSGKTETALAYAWKLID-QQIADSVIFALPTQATANAMLTRMEA----SASH 363 L + APTG GKT + A+A KL + +I+ LP + + E + Sbjct: 281 LYSLTAPTGIGKTFASFAFANKLRELSAYGKRIIYCLPYTSIIDQNFNEFEKIINFNLKE 340 Query: 364 LFSS--PNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGV 421 ++ +L H L ++I + ++ + L +S + V Sbjct: 341 VYKKNPSKYLLKHHYLTPLELKKNIDLEKDSRISRDLEKYLDDRLLLESWESGN----IV 396 Query: 422 CTIDQVLISVLPVKHRFIRGL-GIGRSVLIVDEVHAYDTYMNGLLEAVLKAQ-ADVGGSV 479 T Q+L S++ K+ +++ I SV+I+DEV ++ VLK + + Sbjct: 397 TTFVQLLESIIGNKNSYLKKFHNIVNSVVILDEVQNIPVEYYHVVGKVLKILGKNFNTHI 456 Query: 480 ILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFS 539 +L++AT P YG + N Y N FD ++ + Sbjct: 457 LLMTATQPEII-------YGNDVVNLVNEKKY--------NEMNVFD------RVNLKII 495 Query: 540 IQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQ-VDID 598 + P + D L L + ++CN + A Y+ + EL ++ + Sbjct: 496 DKLNPYNIEDFLGYLEL-------NFNSKTGLIVCNTISSALDIYKYVDELFTSKGYHVY 548 Query: 599 LFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADL 658 T DR EK + + K K I+V+TQ++E +D+ F+ + P D Sbjct: 549 SLTTNLTPIDRLEKIDEINMKIDKGEK----IIVVSTQLIEAGVDLSFEEVFRDFAPLDS 604 Query: 659 LFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNG 718 + Q GR +R + + V I+L + + +Y V ++ ++ + E Sbjct: 605 IIQVAGRCNRSGELPQ----KGKVNIIMLKNDKEEMYCNKVYDKV-LLDICREVLSE-KK 658 Query: 719 ASLFFPDAYRQWLDSIY 735 + + Y + Y Sbjct: 659 SFIDMSKNYFSRIRESY 675 >UniRef50_B1YHA2 Metal dependent phosphohydrolase n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YHA2_EXIS2 Length = 773 Score = 218 bits (555), Expect = 7e-55, Method: Composition-based stats. Identities = 123/796 (15%), Positives = 236/796 (29%), Gaps = 115/796 (14%) Query: 48 LQNTFCRNEMLSKQRVKAWLLFFIAL-HDIGKFDIRFQYKSAESWLKLNPATPSLNGPST 106 L E K + L HDIGK FQ Sbjct: 21 LLEARGLAENWGKDIGLMHVCGVAGLLHDIGKLSDEFQT--------------------- 59 Query: 107 QMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHS 166 +G + + + G A+ HHG + Sbjct: 60 ----YIRKATSGEHVRRGEVDHATAGGRLLFEQLKGNRGQLLAEMVANAILSHHGNLQDY 115 Query: 167 QDQDKSRWEMPASLASYAAQDKQAREEWISVL--EALFLTPAGLSINDIPPDCSSLL--- 221 ++ + K RE + V+ E F +++++ S +L Sbjct: 116 -YLEEESPFLQRVERKELPSYKMCRERFFQVVIDEQEFNRYVERAVDEL---YSWILRDG 171 Query: 222 --AGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRC 279 SLA ++F+ +D R + Q ++ ++ L Sbjct: 172 GSTARVSLA---------TKYIFSILLDADRTNTREFEQGITTMTTQ-VDFEELKRRLET 221 Query: 280 YEGVHALLDNGYQPRQLQVLVDAL-----PVAPGLTVIEAPTGSGKTETALAYAWKLIDQ 334 + + +L+ + G+ + PTG GKT +L YA Sbjct: 222 HLSTFSQQTEITPINRLRQEMSDACRVFANQPSGVYTLSIPTGGGKTLASLRYALHHATT 281 Query: 335 QIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQ 394 +I+ +P ++ + A + + ++ H N + E Sbjct: 282 YQKKRIIYVVPFTT----IIEQNARVARDVLGTDMILEHHSN--------------VVEI 323 Query: 395 GQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLG-IGRSVLIVDE 453 V Q K + I T+ Q L + +R R L + +++I DE Sbjct: 324 EDASDDVMDIQAKLHLAKDNWDAPIIFTTMVQYLNTFYAKGNRNTRRLHHLSEAIIIFDE 383 Query: 454 VHAYDTYMNGLLEAVLKAQAD-VGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYP 512 V L +K D + SV+L +AT P A Sbjct: 384 VQKVPLKCISLFNESVKFLKDSLESSVVLCTATQP----------------------ALE 421 Query: 513 LINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCL 572 + ++ + D L + R ++ + + + E + V + Sbjct: 422 FVKYQLHQDGEMIDALPQVMEAFRRTDLEV----VEGEMDTARLAEVVTRQVEEKNSVLV 477 Query: 573 ICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRIL 632 I N V + Y+ L++ + + ++ R ++ + ++ I Sbjct: 478 ILNTKSVVKKLYETLRQQHPDE-EVIHLSTAMCAAHRM----DILRTINQRLEQGERIIC 532 Query: 633 VATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEG 692 ++TQ++E +DV F +I D + Q GR +RH R + + L Sbjct: 533 ISTQLIEAGVDVSFACVIRSLAGLDSIAQAAGRCNRHGEVARQTVYLVDHIEENLKHLPE 592 Query: 693 YGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDK 752 R + I + + + + + G L R + +YD +E++ + + Sbjct: 593 IARGKEIVRAILIDFLRDE--QSYEGNLLGTVAMTR-YFQELYDASEVE----LDFPIRG 645 Query: 753 FESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQ 812 FK RKV E L T+ + E + GK+L+ Sbjct: 646 TTLTLAPMLFKPRKV----PELILSSRHRTVANHFKVIEDMTETVLVPYGEEGKRLI-AS 700 Query: 813 VYEDLSHEQQYEALAL 828 + E + L Sbjct: 701 LNGQADWEDLRKWLKQ 716 >UniRef50_A6TNS1 CRISPR-associated helicase Cas3 n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TNS1_ALKMQ Length = 798 Score = 218 bits (555), Expect = 8e-55, Method: Composition-based stats. Identities = 124/739 (16%), Positives = 238/739 (32%), Gaps = 133/739 (17%) Query: 73 LHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSL 132 LHD+GK +F S + NP+ SL G +H AG + Sbjct: 46 LHDMGKQTDKF--NSYIHYSATNPSDKSLRG-------SIDHSTAGAKFIYD-------- 88 Query: 133 GDFFSFFDAAPHPYESWFPWVEAVTGHHGFILH--------------SQDQDKSRWEMPA 178 + P+ + A+ HHG ++ ++D+D E + Sbjct: 89 ---NFYHTKDPYQKFTAQLISLAICSHHGGLIDCLDLNGMDRFTDRMNKDKDFLYEEALS 145 Query: 179 SLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGF--------CSLADW 230 + ++ K + + E + ++ D AG AD Sbjct: 146 NYRLEFSEMKHLNDLFNKSKEEIKAILTKVNKIDGSAKFGQFAAGMLEKYLFSCVIDAD- 204 Query: 231 LGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNG 290 +T+LF E S N ++ + D V + + + Sbjct: 205 -----RYDTYLFMEGKESKQNIDKSDLWNELADVLEV----------KLKSYPKSGKIDL 249 Query: 291 YQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATA 350 + + G+ + PTG GKT ++L YA + + + V + +P Sbjct: 250 LREEVSIACKNFGENKTGIYQLAVPTGGGKTLSSLRYALQHAKKFNKERVFYIIPFTTII 309 Query: 351 NAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQS 410 + + ++IL H ++ + + QEE + +W S Sbjct: 310 DQ----NAKDIKDILGREDIILEHHSNL------------VVDNDQEEYKLLTERWDS-- 351 Query: 411 NKKVFLGQIGVCTIDQVLISVLPVKHRFIRG-LGIGRSVLIVDEVHAYDTYMNGLLEAVL 469 I + T+ Q L ++ + +R + S++I DE+ A + + + Sbjct: 352 -------PIVLTTMVQFLDTLFSGGTQGVRRMHNLTNSIIIFDEIQAIPIKCINMFNSAI 404 Query: 470 KAQADV-GGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLL 528 +++ ++IL +AT P LL T + EN + P + ++F+ Sbjct: 405 NFLSNICNATIILCTATQP------LLSTTEMPLKLSENPNIIP-------DMHEKFEQF 451 Query: 529 AHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLK 588 + R + L D + D +ER+ V +I N + A+ + LK Sbjct: 452 KRVNLIDKRTTEGYSAASLKDFVLD--TMERVE-------SVLIIVNTKNTAKEVFNELK 502 Query: 589 ELN---NTQVDIDLFHAR--FTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLD 643 + N + +FH + R + + + G I ++TQ++E ++ Sbjct: 503 KANADLPPEKQYAVFHLSTGMCPSHRMKILKEMRTKLGHE-----RVICISTQLIEAGVN 557 Query: 644 VDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNV 703 + F I D + Q GR +RH I+ +GE R I Sbjct: 558 ISFGSAIRSLAGLDSIAQAAGRCNRHGET------TCSDVYIVNIEGESVNRLVDIKEGQ 611 Query: 704 RVMWRTQQHIEELNGAS------LFFPDAYRQWLDSIYDDAEMDEP-EWVGNGMDKFESA 756 T++ ++E L P A Q+ + + + DK Sbjct: 612 EC---TRRVLDEFKENPKSFDHDLLSPKAMNQYYQYYFHNRSAEMNYTLAKPNDDKSMYD 668 Query: 757 ECEKRFKARKVLQWAEEYS 775 +A Y Sbjct: 669 LLSGNKEAFNAFNSRNGYK 687 >UniRef50_D1CHV2 CRISPR-associated helicase Cas3 n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CHV2_THET1 Length = 858 Score = 218 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 146/848 (17%), Positives = 258/848 (30%), Gaps = 161/848 (18%) Query: 14 SSKSLTKGNDIHL---LIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFF 70 + + T+G + L H VA A + L + Sbjct: 5 ARPAETRGGREYPEELLADHLRVVAEAARGYLVGPWPDSERLSE------------LAWV 52 Query: 71 IA-LHDIGKFDIRFQYKSAESWLKLNPATPSLNGPST-----QMCRKFNH-GAAGLYWFN 123 HD GK+ FQ K + + P + +CR+ H Sbjct: 53 AGATHDFGKYTTFFQEKLPPLEKPPPKPEYTHHAPVSALLGAYVCRQRWHSDREAALLVF 112 Query: 124 QDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTG------------------HHGFILH 165 S + + G H G I+ Sbjct: 113 LAIWRHHGALVCPSMILPGKQQLRDSPFYKRMIGGIKAEYEAIAAQIANMQGEHKGQIIS 172 Query: 166 SQDQDKSRWEMPASLASYAAQDKQAR-EEWISVLEALFLTPAGLSINDIPPDCSSLLAGF 224 S +P + + LF L + Sbjct: 173 EM----SALGVPEVEGFLSGDVVPGLMRDLYEAYMDLFFASEDPGAMRTYWHALLLFSAL 228 Query: 225 CSLADWLGSWTTTNTFLFNEDAPSDINALR--TYFQDRQQDASRVLELSGLVSNKRCYEG 282 AD ++ + DAP + R Q + + + L+ +G Sbjct: 229 -IDAD-----KHISSRVGTRDAPRYDIPYELVERYVQRMQREHQSVARAELL---EIRDG 279 Query: 283 VHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQ-----QIA 337 V ++ ++ L PGL + APTGSGKT AL A KL ++ Sbjct: 280 VFQESTRFFEETPVEELF------PGLFSLTAPTGSGKTLAALGAALKLRERVRNTKGWT 333 Query: 338 DSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQG-- 395 +I+ALP + ++ S L + L G +H +I+ +E+ Sbjct: 334 PRIIYALPFTNIIDQNHDVIQKVLSELPGYSSDPL--GYLIKHHHLATIQGSKGSEEDVP 391 Query: 396 QEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGL-GIGRSVLIVDEV 454 EE + W S+ + V T Q+ S++ +R ++ L + S++I+DE+ Sbjct: 392 TEEQLLMVESWDSE---------VVVTTFVQLFESMVTNSNRRLKKLHNVAGSIIILDEI 442 Query: 455 HAYDTYMNGLLEAVLKAQA-DVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPL 513 + L+ + A +G +VI ++AT P P Sbjct: 443 QSIPYEQWSLVHETITTLAQHLGCTVIQMTATRPRIL---------------------PE 481 Query: 514 INWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLI 573 + F LL + +P AD+ + + ++ V +I Sbjct: 482 AREVLPQPDKYFGLLDRTQIVPR-----------ADVRSLEDLQDLVLELGERYHSVLVI 530 Query: 574 CNLVDVAQVCYQRLKELNNTQ------------------------VDIDLFHARFTLNDR 609 N + A YQ+L L+ + L H + Sbjct: 531 LNTIPSAVSFYQQLTSLDGIEGYREPSELDRSKDDWDRYWDDYSPKGRMLVHLSTNVVPW 590 Query: 610 REKENRV-ISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHR 668 + + V ++ + K + I+V+TQVVE +D+DFD ++ H P D + Q GR +R Sbjct: 591 QRRHRVVGLARILRRRKEELRPIVVSTQVVEAGVDLDFDVVVRDHAPLDSIVQAAGRCNR 650 Query: 669 HHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYR 728 A + PV + L D E IY + + L P Sbjct: 651 SW----AADDQRPVYVVGLRDERERHLAERIYG---------KVLTRKMEEVLSSPKDEP 697 Query: 729 QWLDSIYDDAEMD---EPEWVGNGMDKFESAECEK-RFKARKVLQWAEEYS-LQDNDETI 783 + Y D E P+ + + + K F+ ++ +Y +++ E Sbjct: 698 EL----YADIEQYFALLPDLLTDDEYRAYIWAMRKLNFRGKEGEVSISQYRHIEEAGEAY 753 Query: 784 LAVTRDGE 791 + GE Sbjct: 754 PVIVELGE 761 >UniRef50_D2L2Z3 Metal dependent phosphohydrolase n=2 Tax=Desulfovibrio RepID=D2L2Z3_9DELT Length = 744 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 122/724 (16%), Positives = 219/724 (30%), Gaps = 133/724 (18%) Query: 15 SKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIAL- 73 S+ + L H V A L F + L Sbjct: 15 SREGQPQSAWQGLAAHLHGVGA-----------LARDFADRFGAGEWGA------LAGLF 57 Query: 74 HDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLG 133 HD GK+ FQ + A +++ H +AG Sbjct: 58 HDAGKYTEAFQRRLAGDGQRVD------------------HSSAGARL------------ 87 Query: 134 DFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREE 193 A + GHH + +D D + A+ + + + Sbjct: 88 -------AVDRFKGPGKLLAYCIAGHHAGLPDGRDNDLACLA-ARLKAALVPEPARTLAD 139 Query: 194 WISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINAL 253 EA TPA +L AD+L T FL E Sbjct: 140 SRQAPEAFPFTPALGRTGFQCAFFIRMLYSCLVDADFL----DTEAFLDREKHAHRGGYP 195 Query: 254 RTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIE 313 + ++ + L + + ++ + L + A APGL + Sbjct: 196 T--LETMRERLTAHLAQFAAKAEPSPV--------DPWRAKVLGWCLGAAGDAPGLFSLT 245 Query: 314 APTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILA 373 PTG GKT ++LA+A VI+ +P +++ + ++ Sbjct: 246 VPTGGGKTLSSLAFALNHAITHDRKQVIYVIPY----TSIIEQNADVFRSAVGPEAVVEH 301 Query: 374 HGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLP 433 H N+ + + E +E + + +++ + V T Q S+ Sbjct: 302 HS----NYDPKRRTDKDAAEPAGDEGLGRRHELAAENWD----APLVVTTSVQFFESLFA 353 Query: 434 VKHRFIRGL-GIGRSVLIVDEVHAYDTYMN-GLLEAVLKAQADVGGSVILLSATLPMKQK 491 + R L I +SV+I+DE + LEA+ + G +V+L +AT P + Sbjct: 354 HRSSRCRKLHNIAKSVVILDEAQMLPPTLLRPCLEALRELSESYGTTVVLCTATQPALTR 413 Query: 492 QKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADML 551 ++ +GL P E + P G+ A + +AH +L Sbjct: 414 REGF-AFGLE-PPREIVADVP-----GLFAALKRTRVAHLGKLTD--------------- 451 Query: 552 PDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRRE 611 + ++ QV + N A +RL L + A R E Sbjct: 452 ------DELVKRLREHEQVLCVVNTRAHA----RRLHGLLGPGAGVFHLSASMCPAHRSE 501 Query: 612 KENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHR 671 K + + K +V+TQ++E +DV F + D + Q GR +R Sbjct: 502 KLAAIRAAL----KAGQPCRVVSTQLIECGVDVSFPAVYRAEAGVDSVAQAAGRCNREGE 557 Query: 672 KYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWL 731 + + + E + R + A P+A + Sbjct: 558 LAEG--------VVYVFEAEAAPPAGELR---RAAEEGHVVLRAF--ADPLSPEAVAAYF 604 Query: 732 DSIY 735 +++Y Sbjct: 605 EALY 608 >UniRef50_C4IBN7 Crispr-associated helicase Cas3 n=1 Tax=Clostridium butyricum E4 str. BoNT E BL5262 RepID=C4IBN7_CLOBU Length = 871 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 115/644 (17%), Positives = 222/644 (34%), Gaps = 60/644 (9%) Query: 50 NTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMC 109 N F ++ + L+ I HDIGK + FQ ++ L T S G Sbjct: 71 NYFKDMSQTGRKMFRRLLVNTIGFHDIGKINPNFQNTKMDNMLGKYAETFSGIG------ 124 Query: 110 RKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHH---GFILHS 166 H + + E S D A++ HH Sbjct: 125 --SEHSLLSSVLYIDYFIEEIL---SLSNEDGRLILMSIMMFNAYAISRHHSDLDNFNEF 179 Query: 167 QDQDKSRWEMPASLASYAAQDKQA--REEWISV----------LEALFLTPAGLSINDIP 214 + + + ++ D R+ ++ ++ + A + Sbjct: 180 LSKFNEGEKAIEIINTFKENDMNNIYRKNFVLSENRIVKVCGYIKKKYFNEADDEKSIYL 239 Query: 215 PDCSSLLAGFCSLADWLG-SWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGL 273 L+ D+ S T + + S+I+ ++D D + + Sbjct: 240 YTYERLIYSLLVCCDFYATSEFMNKTIISDFGEISNIDEFYKIYKDT--DVYKSIREYED 297 Query: 274 VSNKRCYEGVHALLDNGYQPRQLQVLVDAL--PVAPGLTVIEAPTGSGKTETALAYAWKL 331 ++ + + N + L + + +EAPTGSGK+ TA ++KL Sbjct: 298 TKYEKSKDLSYEKNINVLRTEMFLDAERELLKNIDENIYFLEAPTGSGKSNTAFNLSFKL 357 Query: 332 IDQ-QIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRA 390 ++ + + + P L + + + ++ + I + Sbjct: 358 FEEDKNLKKIYYVYPFNTLVEQNLNILNKTFGNNKAAMDKIAVINSIYPIKEDNKYVEYD 417 Query: 391 ITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLP-VKHRFIRGLGIGRSVL 449 + G E+ + + N++ + + T + ++ K + SV+ Sbjct: 418 SGKNGDEKDFSYKYYEKALLNRQFLNYPVILTTHVSLFNTMFGENKEDAFAFHQLANSVI 477 Query: 450 IVDEVHAYDTYMNGLLEAVLKAQAD-VGGSVILLSATLPMKQKQKLLDTYGLHTDPVENN 508 ++DE+ +Y + + + LK A + VI++SATLP L+ V N Sbjct: 478 VLDEIQSYKNTIWTEIISFLKGFAKILNIKVIIMSATLPD-----------LNMLAVNTN 526 Query: 509 SAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGA 568 S LI R ++P Q R + + I + L DL E ++ ++ Sbjct: 527 SVCSLI-------KDREKYFSNP-QFKDRVIVNYDLIDSGNPLQDL--YEHVLKNSSRNK 576 Query: 569 QVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNV 628 ++ + + Q Y+ K LN ++D + T +D + +R+I N Sbjct: 577 KILIEF--IKK-QSAYEFFKMLNEEELDATVL--LMTGDDNSIERDRIIKELSSNESEEN 631 Query: 629 GRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRK 672 G ILVATQV+E +D+D D D Q +GR++R RK Sbjct: 632 GVILVATQVIEAGVDIDMDIGYKDISKLDSDEQFMGRINRSCRK 675 >UniRef50_C0GMN4 CRISPR-associated helicase Cas3 n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GMN4_9DELT Length = 721 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 123/757 (16%), Positives = 223/757 (29%), Gaps = 129/757 (17%) Query: 43 DQSVVLQNTFCRNEMLSKQRVKAWLL----FFIA-LHDIGKFDIRFQYKSAESWLKLNPA 97 + +L+ + ++ + + + + + LHDIGK+ FQ K Sbjct: 14 REWQLLEVHLRQVAEMTAKHARVFSASDWGYILGRLHDIGKYRQEFQDKLE--------- 64 Query: 98 TPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVT 157 Q R+ +H G + L + + Sbjct: 65 --------KQSSRRVDHKGVGARLAWEYLGQPGKLVSY-------------------CIA 97 Query: 158 GHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDC 217 GHHG + + + S + D + + ++ L P Sbjct: 98 GHHGGLP--------NYGHSQTDTSTSLMDLLQQAGVLPDHAPDPVSDISLPSLPFQPRS 149 Query: 218 SSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNK 277 + LA F + L S FL Y A L N Sbjct: 150 AFQLAFFTRM---LFSALVDADFL----DTERFMEPEKYAARNPGPALADLLQP---LNA 199 Query: 278 RCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIA 337 + + N + L+ + + PGL + PTG GKT ++A+A + + Sbjct: 200 KLAGFSNEGRINLLRREILERCRENASLEPGLFTLTVPTGGGKTLASMAFALEHSQKYGH 259 Query: 338 DSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQE 397 +I+ +P +++ + +F ++I H N +S+ A Sbjct: 260 RRIIYVIPY----TSIIEQNAQVFREIFPPDSIIEHHS----NFDERSLPEEADQFGPGL 311 Query: 398 EAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGL-GIGRSVLIVDEVHA 456 + C W + V T Q S+ K R L + SV+I+DE Sbjct: 312 RHRLACENWG---------APVVVTTNVQFFESLYASKPSRCRKLHNLAGSVIILDEAQM 362 Query: 457 YDT-YMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLIN 515 Y+N L A+ + + S++L +AT P +K+ Sbjct: 363 LPVKYLNPCLRALEELAENYQASIVLCTATQPALRKR----------------------- 399 Query: 516 WRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICN 575 + D + P R + L D LE + QV + N Sbjct: 400 ---DDFKHGLDGVREIAPEPKRMHREFLRTRLKDAGR--LDLEEVANLIRDKEQVLCVVN 454 Query: 576 LVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVAT 635 A + ++ + A R + ++ +V+T Sbjct: 455 TRARAGNLFDLVQNEPGARH----LSALMCPAHRSLELKKIREVL----MDGAPCRVVST 506 Query: 636 QVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGR 695 Q+VE +DV F +I + D + Q GR +R ++ T+ P G Sbjct: 507 QLVEAGVDVSFPEVIREMAGLDSMAQAAGRCNREGELD-----DLGKVTVFTPSE---GL 558 Query: 696 HEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIY--DDAEMDEPEWVGNGMDKF 753 T +H G F PDA + Y +DE + + Sbjct: 559 APAFSQAAGSAHSTLRH----YGHDPFAPDAVEYFFSETYWLQAQRLDEKQILDEFRAPA 614 Query: 754 ESAECEKRFKARKVLQWAEEYSLQD-NDETILAVTRD 789 K +++ + N+E + R Sbjct: 615 PKWAFRDVAKRFNLIENFMSPVIISFNEEAENLIERL 651 >UniRef50_C6PBT9 CRISPR-associated helicase Cas3 n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PBT9_CLOTS Length = 788 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 128/771 (16%), Positives = 256/771 (33%), Gaps = 127/771 (16%) Query: 57 MLSKQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGA 116 +L + + HD+GK FQ +L + + + Sbjct: 40 LLDDKLISRLTKVIALCHDLGKSTRYFQ-----DYLSADDSEKKNMKSMKETHHSLISAV 94 Query: 117 AGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEM 176 + ++ + D + + + HHG + + + + Sbjct: 95 IAFFVIKEEINKHAAYNDVKTLLPFIAY---------IVIKKHHG----NLNDVVTEASL 141 Query: 177 PASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTT 236 S Q+ +E + + L AGL + + + Sbjct: 142 DDSDIDTMKSQLQSIDEEKFSILSDNLVKAGLDVKLDKNTINHYIENI------KNELRN 195 Query: 237 TNTFLFNEDAPSDINA--LRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDN----- 289 ++ + SD++ L Y D+ + + G ++ E L+D Sbjct: 196 VKRYIRRINEKSDLSYYILINYIFSLLIDSDKSEVVIGRNFSRSYVELPSDLVDKYKSQM 255 Query: 290 GYQPRQLQVLVD---------ALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQ-----Q 335 Y+ ++ L + + + I PTG GKT ++++A +L ++ Sbjct: 256 SYKENKINSLREDAYREVNSSEINFDDRILSINLPTGLGKTLASISFALRLREKLYKTFN 315 Query: 336 IADSVIFALPTQATANAMLTRMEASAS--HLFSSPNLILAHGNSRFNHLFQSIKSRAITE 393 +I++LP + E ++ +S N++L H +HL + + TE Sbjct: 316 KNYRIIYSLPFLSIIEQNFQEFEKILKGNNINTSTNVLLKH-----HHLSEMKYTDDDTE 370 Query: 394 QGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLG-IGRSVLIVD 452 + + + W S+ I V T Q+ ++L K++ +R I S++I+D Sbjct: 371 FDTDSSKIMIEGWNSE---------IIVTTFIQLFHTLLSNKNKSLRKFHRIANSIIILD 421 Query: 453 EVHAYDTYMNGLLEAVLKAQA-DVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAY 511 E+ + Y L++ +L+A A + VI ++AT PM + Sbjct: 422 EIQSIPFYYWKLVKEILQAVAFKLNSYVIFVTATQPMIFGNDEIRQL------------- 468 Query: 512 PLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIA--AANAGAQ 569 ++ Q + + + +L L ++ G Sbjct: 469 ---------------------TDKRKYFNQMDRVVIKPVLDRNIHLSELVDMFDLKDGRS 507 Query: 570 VCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVG 629 I N + A+ Y+ LK+ + +I +R E+ + S K Sbjct: 508 YLFILNTIASAKQFYELLKQKLPDE-EIVYMSTHIVPFERLERIELIKSKKVKYA----- 561 Query: 630 RILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPD 689 V TQ+VE +D+DFD ++ P D + Q GR +R+ +K V + L D Sbjct: 562 ---VTTQLVEAGVDIDFDVVVRDIAPLDSINQSAGRCNRNWQK------SGEVYVVSLID 612 Query: 690 GEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIY----DDAEMDEPEW 745 IY V ++ T++ + + + + +D Y ++ D Sbjct: 613 ENDKKYSSRIYDKV-MINITEKILSQYDEIG---EKDFLNIIDRYYTAISENLSSDAAIN 668 Query: 746 VGNGMDKFESAECEKRFKARKVLQWAEEYSLQD-----NDETILAVTRDGE 791 + N + K + + K + Y D NDE I R E Sbjct: 669 ILNAVYKLKYDSDDGTPSISKFKLIDDGYYKVDAYIEYNDEAIELWQRYLE 719 >UniRef50_C1DUR0 Crispr-associated helicase Cas3 n=1 Tax=Sulfurihydrogenibium azorense Az-Fu1 RepID=C1DUR0_SULAA Length = 762 Score = 216 bits (549), Expect = 4e-54, Method: Composition-based stats. Identities = 101/546 (18%), Positives = 188/546 (34%), Gaps = 102/546 (18%) Query: 301 DALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIAD-----SVIFALPTQATANAMLT 355 + + + + PTG GKT + YA K+ D+ + +I+ LP + Sbjct: 260 QEVDLKHKIYTLNLPTGIGKTLLSFKYALKIADKFKQETGKDLRIIYVLPFLSVIEQNHK 319 Query: 356 RMEASAS--HLFSSPNLILA-HGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNK 412 +E ++ +L+L H + FN+ + +E + L++ Sbjct: 320 VIENLLKHSNINVDNSLLLKYHHLTGFNY-----------KDEEEILDYDTSRILTEG-- 366 Query: 413 KVFLGQIGVCTIDQVLISVLPVKHRFIRGLG-IGRSVLIVDEVHAYDTYMNGLLEAVLKA 471 F +I + T Q S++ K +R + SV+I+DEV + T L+ VL Sbjct: 367 --FNSKIIITTFMQFFYSIIGNKKGMVRKFHRLTNSVVILDEVQSIPTKYWLLIREVLYF 424 Query: 472 QAD-VGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAH 530 A+ VI +ATLP IN + ++ + F+ L Sbjct: 425 LAERFNLYVIYTTATLPDI-----------------------FINGKNLSSGEYFNKLNR 461 Query: 531 PEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKEL 590 + +I +++ +L I N V A+ Y LK+ Sbjct: 462 -----YQINIDLSQKTVSEFCSNL--------QLQHDKSYLFILNTVSSAKEVYNFLKQK 508 Query: 591 NNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLI 650 Q + +R ++ + I V+TQ+VE +D+DFD + Sbjct: 509 YPDQ--VIYLSTHIIPKERLKRIQALKDKLKP--------IAVSTQLVEAGVDIDFDVVY 558 Query: 651 TQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQ 710 P D + Q GR +R + + V I L D + ++Y + ++ T+ Sbjct: 559 RDFSPLDSIIQSAGRCNREGLREKGL-----VYVINLIDDKNRKYSSYVY-DTVLLEATK 612 Query: 711 QHIEELNGASLFFPDA----YRQWLDSIYDDAEM--DEPEWVGNGMDKFESAECEKRFKA 764 + + + + YR + Y D ++ V +G + E + K Sbjct: 613 DVLTKDLYDEIEIQELVKRYYRLLNERKYQDRDILKSATGLVFSGENSIEDFLLIEEGKY 672 Query: 765 ----------RKVLQWAE------EYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQL 808 R V W E +L + + ++ +D + +P K Sbjct: 673 KQDVFIQLDDRAVEVWNEFKKVLTIENLFERKKAFNSIKKDFYEYVVSVPIKNNEPNK-- 730 Query: 809 LDGQVY 814 DG Y Sbjct: 731 -DGNFY 735 >UniRef50_C6QYT7 CRISPR-associated helicase Cas3 domain protein n=2 Tax=Bacteria RepID=C6QYT7_9ACTO Length = 762 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 103/733 (14%), Positives = 229/733 (31%), Gaps = 107/733 (14%) Query: 73 LHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSL 132 LHD GK+ FQ R H + GL Sbjct: 52 LHDHGKYQKSFQ-------------------------RYIRHSS-GLADQGPARAPHSMA 85 Query: 133 GDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSR--WEMPASLASYAAQDKQA 190 G + + GHH + S + + + + A QA Sbjct: 86 GAIHAHSLFKDRNKTLAQILAYCIGGHHRGLYDSAELENALKTADNKAYYQDMLRNAPQA 145 Query: 191 REEWISVLEALFLTPAGLSINDIPPDCSS--LLAGFCSLADWLGSWTTTNTFLFNEDAPS 248 + + L P + I + L + AD + D + Sbjct: 146 ATDLEKRIAQLGTLPNIMEIEEEDRPFFVRMLFSAL-IDAD-------------HLDTEA 191 Query: 249 DINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQV-LVDALPVAP 307 +N + ++ + ++ N + LQ + P Sbjct: 192 FMNKEKALLRNESKKIDVSWSTLRDRLKEKTDSFAKDSPLNHARAEFLQKCRIHGSSHDP 251 Query: 308 GLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSS 367 + + PTG GKT +++A+A + + + +I+ +P + +F Sbjct: 252 SIYSLFLPTGGGKTLSSMAWALESAIRNDSSRIIYVIPYTSIITQ----TAEIFKQIFGE 307 Query: 368 PNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQV 427 ++ H + + + +TE + I + T Q+ Sbjct: 308 EYVLEHHSELDMGDNEEYDRWKLLTEN--------------------WDAPIIITTNVQM 347 Query: 428 LISVLPVKHRFIRGL-GIGRSVLIVDEVHAYDTYMNGLLEAVLKAQA-DVGGSVILLSAT 485 S+ + R L I SV++ DEV + + + + +++ + +++L +AT Sbjct: 348 FESLYASRTSRCRKLHNICNSVIVFDEVQMFPSALLNPMLRAVESLSLCFNANILLCTAT 407 Query: 486 LPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPI 545 P+ + E+++ Y + +L + E++ + + I Sbjct: 408 QPVFTQ-------SFEVAGRESSNFYSIQIEIEDVVLYDKELFSAFERVRYHTFKEKKKI 460 Query: 546 CLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFT 605 + + + I N A Y + L + +I +R Sbjct: 461 AI------------LAKELHQQRTALCITNTRADAGKLYDEVVALGRNKEEIVHL-SRMM 507 Query: 606 LNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGR 665 + K+ I+ + + I+++TQ++E +D+DF + H D + Q GR Sbjct: 508 CSLHIRKQ---IAYIRERLSAGLPIIVISTQLIEAGVDIDFPVVYRAHSGLDSIIQAGGR 564 Query: 666 LHRHHRKYRPAGFEIPVATILLPDG-EGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFP 724 +R R V L DG + +G + ++++ + + + P Sbjct: 565 CNREGRLSSGD-----VYIFDLEDGSKPWGEAKQGQQASILIYKKI----KDDVLNPNDP 615 Query: 725 DAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETIL 784 + RQ+ Y + + ++ + + K+ ++++ L +N++ Sbjct: 616 ELIRQYYLEYYGNQ---VNSFDKRHIEDYLWSYQAKQDLEWDFETASKKFRLIENEDITD 672 Query: 785 AVTRDGEMSLPLL 797 G+ L+ Sbjct: 673 IYVPYGQEGEELI 685 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P38036 Uncharacterized protein ygcB n=13 Tax=Enterobact... 909 0.0 UniRef50_Q1JX05 CRISPR-associated helicase Cas3, core n=2 Tax=De... 611 e-173 UniRef50_C5SD53 CRISPR-associated helicase Cas3 n=1 Tax=Allochro... 597 e-169 UniRef50_Q04QC1 Helicase n=2 Tax=Leptospira borgpetersenii serov... 528 e-148 UniRef50_D1CGD0 CRISPR-associated helicase Cas3 n=1 Tax=Thermoba... 525 e-147 UniRef50_Q2JWC1 CRISPR-associated helicase Cas3 n=2 Tax=Chroococ... 522 e-146 UniRef50_B3E5V3 CRISPR-associated helicase Cas3 n=3 Tax=Deltapro... 521 e-146 UniRef50_C6SPI7 Predicted helicases n=1 Tax=Streptococcus mutans... 519 e-145 UniRef50_B8GIV7 CRISPR-associated helicase Cas3 n=1 Tax=Methanos... 514 e-144 UniRef50_D2TKK3 CRISPR-associated protein n=1 Tax=Citrobacter ro... 512 e-143 UniRef50_Q314I0 CRISPR-associated helicase Cas3, core n=1 Tax=De... 511 e-143 UniRef50_C2BEU2 CRISPR-associated helicase n=1 Tax=Anaerococcus ... 510 e-142 UniRef50_C1XFZ7 CRISPR-associated helicase Cas3 n=3 Tax=Meiother... 507 e-142 UniRef50_Q12YB2 CRISPR-associated helicase Cas3 n=2 Tax=cellular... 506 e-141 UniRef50_B1LQ84 CRISPR-associated helicase Cas3 n=55 Tax=Enterob... 506 e-141 UniRef50_D2C268 CRISPR-associated helicase Cas3 n=3 Tax=Enteroba... 503 e-140 UniRef50_Q1GAI8 CRISPR-associated helicase Cas3 n=3 Tax=Lactobac... 502 e-140 UniRef50_D2RAZ8 CRISPR-associated helicase Cas3 n=3 Tax=Actinoba... 501 e-140 UniRef50_D1CAJ4 CRISPR-associated helicase Cas3 n=1 Tax=Sphaerob... 501 e-140 UniRef50_A1SV69 CRISPR-associated helicase, Cas3 family n=2 Tax=... 499 e-139 UniRef50_C0W6U4 CRISPR-associated helicase n=1 Tax=Actinomyces u... 499 e-139 UniRef50_B4RSJ9 CRISPR-associated helicase Cas3 n=3 Tax=Gammapro... 496 e-138 UniRef50_A5GBL7 CRISPR-associated helicase Cas3 n=1 Tax=Geobacte... 496 e-138 UniRef50_C6C422 CRISPR-associated helicase Cas3 n=6 Tax=Enteroba... 492 e-137 UniRef50_A8LYZ3 CRISPR-associated helicase Cas3 n=1 Tax=Salinisp... 492 e-137 UniRef50_C7LYX0 CRISPR-associated helicase Cas3 n=1 Tax=Acidimic... 487 e-136 UniRef50_Q0W588 Putative CRISPR-associated helicase n=1 Tax=uncu... 485 e-135 UniRef50_C0VRV9 CRISPR-associated helicase Cas3 family protein p... 485 e-135 UniRef50_C7MTN1 CRISPR-associated helicase Cas3 n=1 Tax=Saccharo... 484 e-135 UniRef50_Q7N8H9 Similar to unknown protein YgcB of Escherichia c... 482 e-134 UniRef50_A1ARI0 CRISPR-associated helicase, Cas3 family n=3 Tax=... 482 e-134 UniRef50_Q1R120 CRISPR-associated helicase Cas3, protein n=1 Tax... 482 e-134 UniRef50_D1YEE0 CRISPR-associated helicase Cas3 n=1 Tax=Propioni... 480 e-134 UniRef50_B1VIY4 CRISPR-associated protein n=4 Tax=Corynebacteriu... 479 e-133 UniRef50_C7JIG3 CRISPR-associated helicase Cas3 n=8 Tax=Acetobac... 478 e-133 UniRef50_Q2JH31 CRISPR-associated helicase Cas3, core n=2 Tax=Fr... 477 e-133 UniRef50_Q03C64 CRISPR-associated helicase n=3 Tax=cellular orga... 475 e-132 UniRef50_C7QEM7 CRISPR-associated protein, Cse1 family n=12 Tax=... 473 e-131 UniRef50_A8SDS1 Putative uncharacterized protein n=1 Tax=Faecali... 471 e-131 UniRef50_D2L2X4 CRISPR-associated helicase Cas3 n=1 Tax=Desulfov... 470 e-130 UniRef50_Q5YRB2 Putative uncharacterized protein n=1 Tax=Nocardi... 468 e-130 UniRef50_D1NTH7 CRISPR-associated helicase Cas3, core n=1 Tax=Bi... 467 e-129 UniRef50_Q4JWJ6 Putative uncharacterized protein n=3 Tax=Coryneb... 466 e-129 UniRef50_B0LU92 CRISPR-associated helicase Cas3 n=2 Tax=Streptom... 466 e-129 UniRef50_Q67RP4 Putative helicase n=1 Tax=Symbiobacterium thermo... 465 e-129 UniRef50_A5FTJ4 CRISPR-associated helicase Cas3 n=2 Tax=Acidiphi... 465 e-129 UniRef50_Q47PJ0 CRISPR-associated helicase, Cas3 family n=1 Tax=... 464 e-129 UniRef50_D0Y922 CRISPR-associated helicase Cas3 n=2 Tax=Dehaloco... 461 e-128 UniRef50_A0LM50 CRISPR-associated helicase, Cas3 family n=1 Tax=... 461 e-128 UniRef50_Q1J371 CRISPR-associated helicase Cas3, core n=1 Tax=De... 460 e-127 UniRef50_A7BA68 Putative uncharacterized protein n=1 Tax=Actinom... 460 e-127 UniRef50_C7MQD2 CRISPR-associated helicase Cas3 n=1 Tax=Saccharo... 459 e-127 UniRef50_Q2RY15 CRISPR-associated helicase, Cas3 family n=1 Tax=... 458 e-127 UniRef50_D1A6Q2 CRISPR-associated helicase Cas3 n=1 Tax=Thermomo... 457 e-127 UniRef50_B5ZCG0 CRISPR-associated helicase Cas3 n=2 Tax=Gluconac... 457 e-126 UniRef50_B8IMR6 CRISPR-associated helicase Cas3 n=1 Tax=Methylob... 456 e-126 UniRef50_Q53VY2 Putative uncharacterized protein TTHB187 n=1 Tax... 455 e-126 UniRef50_C1DSH5 CRISPR-associated helicase Cas3, core n=3 Tax=Ps... 453 e-125 UniRef50_B6XT60 Putative uncharacterized protein n=2 Tax=Bifidob... 451 e-125 UniRef50_C7MTA6 CRISPR-associated helicase Cas3 n=1 Tax=Saccharo... 442 e-122 UniRef50_A8M400 CRISPR-associated helicase Cas3 n=1 Tax=Salinisp... 440 e-122 UniRef50_Q1EQS5 CRISPR-associated helicase n=2 Tax=Streptomyces ... 440 e-121 UniRef50_D0WFD2 CRISPR-associated helicase Cas3 n=1 Tax=Slackia ... 439 e-121 UniRef50_A5UR18 CRISPR-associated helicase, Cas3 family n=1 Tax=... 438 e-121 UniRef50_Q0BSC3 Superfamily II DNA and RNA helicase n=2 Tax=Alph... 437 e-121 UniRef50_B8IZA2 CRISPR-associated helicase Cas3 n=1 Tax=Desulfov... 435 e-120 UniRef50_B7KJ22 CRISPR-associated helicase Cas3 n=1 Tax=Cyanothe... 433 e-119 UniRef50_B5GA96 Helicase n=1 Tax=Streptomyces sp. SPB74 RepID=B5... 422 e-116 UniRef50_C8XAY8 CRISPR-associated helicase Cas3 n=1 Tax=Nakamure... 416 e-114 UniRef50_C2GEZ0 Helicase n=1 Tax=Corynebacterium glucuronolyticu... 414 e-113 UniRef50_D1Y491 Superfamily II DNA and RNA helicase n=1 Tax=Pyra... 409 e-112 UniRef50_Q6NEQ4 Putative helicase n=1 Tax=Corynebacterium diphth... 406 e-111 UniRef50_C2KP49 Helicase n=1 Tax=Mobiluncus mulieris ATCC 35243 ... 401 e-110 UniRef50_B5GY58 Crispr-associated helicase cas3 n=1 Tax=Streptom... 400 e-110 UniRef50_B4S8Q3 CRISPR-associated helicase Cas3 n=3 Tax=Bacteria... 400 e-109 UniRef50_C5V9N6 Putative helicase n=1 Tax=Corynebacterium matruc... 396 e-108 UniRef50_Q0AA29 CRISPR-associated helicase Cas3 n=1 Tax=Alkalili... 396 e-108 UniRef50_B8FDH5 CRISPR-associated helicase Cas3 n=1 Tax=Desulfat... 396 e-108 UniRef50_C2CN10 CRISPR-associated helicase Cas3 family protein p... 389 e-106 UniRef50_Q2RXK0 CRISPR-associated helicase, Cas3 family n=1 Tax=... 386 e-105 UniRef50_Q0BRG2 Superfamily II DNA and RNA helicase n=1 Tax=Gran... 383 e-104 UniRef50_Q60AC8 CRISPR-associated helicase Cas3 n=1 Tax=Methyloc... 382 e-104 UniRef50_C9M9R3 CRISPR-associated helicase Cas3, core n=1 Tax=Jo... 381 e-104 UniRef50_B6IWM7 CRISPR-associated helicase Cas3, putative n=1 Ta... 380 e-103 UniRef50_A8LM38 Cas3: CRISPR-associated helicase Cas3 n=1 Tax=Di... 379 e-103 UniRef50_C4ZJX7 CRISPR-associated helicase Cas3 n=2 Tax=Betaprot... 373 e-101 UniRef50_B3PKI9 CRISPR-associated helicase Cas3 domain protein n... 370 e-100 UniRef50_UPI0001AF1D47 CRISPR-associated helicase Cas3 n=1 Tax=S... 368 e-100 UniRef50_B4UE67 CRISPR-associated helicase Cas3 n=3 Tax=Bacteria... 368 e-100 UniRef50_B0TDT7 Crispr-associated helicase cas3 n=1 Tax=Heliobac... 368 e-100 UniRef50_A6VNU7 CRISPR-associated helicase Cas3 n=1 Tax=Actinoba... 366 3e-99 UniRef50_B6WQ58 Putative uncharacterized protein n=1 Tax=Desulfo... 363 2e-98 UniRef50_C4X9J1 CRISPR-associated Cas3 family helicase n=7 Tax=B... 362 4e-98 UniRef50_B4SAU8 CRISPR-associated helicase Cas3 n=1 Tax=Pelodict... 360 1e-97 UniRef50_C5BP95 CRISPR-associated helicase Cas3 domain protein n... 357 9e-97 UniRef50_Q8REC9 ATP-dependent RNA helicase n=4 Tax=Fusobacterium... 357 1e-96 UniRef50_A7VC53 Putative uncharacterized protein n=1 Tax=Clostri... 354 6e-96 UniRef50_C1TRB8 CRISPR-associated HD domain protein n=1 Tax=Deth... 353 2e-95 UniRef50_B1Y4J1 DEAD/DEAH box helicase domain protein n=1 Tax=Le... 351 5e-95 UniRef50_A1VHS3 Metal dependent phosphohydrolase n=3 Tax=Desulfo... 351 6e-95 UniRef50_C1DUL9 Crispr-associated helicase Cas3 n=3 Tax=Hydrogen... 351 9e-95 UniRef50_UPI0001AEDDCA helicase n=1 Tax=Streptomyces albus J1074... 351 1e-94 UniRef50_D0KYZ9 CRISPR-associated helicase Cas3 n=1 Tax=Halothio... 349 3e-94 UniRef50_B9MLS5 CRISPR-associated helicase Cas3 n=2 Tax=Clostrid... 348 7e-94 UniRef50_A4J384 Metal dependent phosphohydrolase n=1 Tax=Desulfo... 348 8e-94 UniRef50_Q9KFY4 BH0336 protein n=2 Tax=Bacillus RepID=Q9KFY4_BACHD 347 1e-93 UniRef50_C6J187 Metal dependent phosphohydrolase n=3 Tax=Bacilla... 346 2e-93 UniRef50_A9B8P3 CRISPR-associated helicase Cas3 n=6 Tax=Chlorofl... 346 2e-93 UniRef50_B8DAB0 Metal dependent phosphohydrolase n=8 Tax=Listeri... 346 3e-93 UniRef50_C6Q963 CRISPR-associated helicase Cas3 n=1 Tax=Thermoan... 345 5e-93 UniRef50_C7N973 CRISPR-associated helicase Cas3 n=2 Tax=Bacteria... 345 5e-93 UniRef50_C6LAQ9 CRISPR-associated helicase Cas3 domain protein n... 343 2e-92 UniRef50_B5YAX8 CRISPR-associated helicase Cas3 n=1 Tax=Dictyogl... 343 2e-92 UniRef50_UPI00018510E1 hypothetical protein Bcoam_15151 n=1 Tax=... 343 3e-92 UniRef50_UPI0001B51C30 hypothetical protein SvirD4_12620 n=1 Tax... 341 7e-92 UniRef50_C1F2C1 CRISPR-associated helicase Cas3 n=1 Tax=Acidobac... 341 7e-92 UniRef50_D2Q5M0 CRISPR-associated helicase Cas3 n=6 Tax=Bifidoba... 340 1e-91 UniRef50_UPI0001A42D32 hypothetical protein PcarcW_06344 n=1 Tax... 338 5e-91 UniRef50_A6TQ84 Metal dependent phosphohydrolase n=2 Tax=Firmicu... 338 5e-91 UniRef50_B1B9K1 Crispr-associated helicase Cas3 domain protein n... 338 8e-91 UniRef50_D0GJL0 Metal dependent phosphohydrolase n=1 Tax=Leptotr... 338 9e-91 UniRef50_B9M5K0 CRISPR-associated helicase Cas3 n=2 Tax=Deltapro... 337 1e-90 UniRef50_C5U6V4 CRISPR-associated helicase Cas3 n=3 Tax=Euryarch... 337 1e-90 UniRef50_A7AL54 Putative uncharacterized protein n=1 Tax=Parabac... 336 2e-90 UniRef50_A3DHS2 CRISPR-associated helicase Cas3 n=3 Tax=Clostrid... 336 3e-90 UniRef50_B2V8N4 CRISPR-associated helicase Cas3 n=2 Tax=Sulfurih... 335 4e-90 UniRef50_C2HJB0 ATP-dependent helicase n=1 Tax=Finegoldia magna ... 335 5e-90 UniRef50_B8DQ50 CRISPR-associated helicase Cas3 n=1 Tax=Desulfov... 335 5e-90 UniRef50_A2SRR5 Metal dependent phosphohydrolase n=1 Tax=Methano... 334 8e-90 UniRef50_A3DKC0 CRISPR-associated helicase Cas3 n=2 Tax=Clostrid... 334 8e-90 UniRef50_A8YWF3 Putative uncharacterized protein n=1 Tax=Lactoba... 334 8e-90 UniRef50_O66694 Putative uncharacterized protein n=2 Tax=Aquific... 334 1e-89 UniRef50_A0LDG1 Metal dependent phosphohydrolase n=2 Tax=Proteob... 333 2e-89 UniRef50_A5V1C0 CRISPR-associated helicase, Cas3 family n=1 Tax=... 332 3e-89 UniRef50_A3J8H8 CRISPR-associated helicase Cas3 n=1 Tax=Marinoba... 332 4e-89 UniRef50_D1B1G2 CRISPR-associated helicase Cas3 n=1 Tax=Sulfuros... 332 4e-89 UniRef50_D2MAH9 CRISPR-associated helicase Cas3 n=1 Tax=Rhodopse... 332 5e-89 UniRef50_C9R3Z8 CRISPR-associated helicase Cas3 n=4 Tax=Proteoba... 331 5e-89 UniRef50_Q2RL61 CRISPR-associated helicase Cas3, core n=1 Tax=Mo... 331 6e-89 UniRef50_B8I204 Metal dependent phosphohydrolase n=1 Tax=Clostri... 329 3e-88 UniRef50_C9L3W2 CRISPR-associated helicase Cas3 domain protein n... 329 3e-88 UniRef50_C8VWJ7 CRISPR-associated helicase Cas3 n=1 Tax=Desulfot... 328 5e-88 UniRef50_C2MA87 CRISPR-associated helicase Cas3 domain protein n... 328 7e-88 UniRef50_B1GZL6 CRISPR-associated protein Cas3 n=1 Tax=unculture... 327 1e-87 UniRef50_UPI0001C373E8 CRISPR-associated helicase Cas3 n=1 Tax=R... 327 1e-87 UniRef50_B2GD19 Putative uncharacterized protein n=1 Tax=Lactoba... 327 2e-87 UniRef50_D2L2Z3 Metal dependent phosphohydrolase n=2 Tax=Desulfo... 327 2e-87 UniRef50_A5UJJ3 Predicted helicase n=1 Tax=Methanobrevibacter sm... 326 2e-87 UniRef50_B1I4M4 CRISPR-associated helicase Cas3 n=1 Tax=Candidat... 326 3e-87 UniRef50_B0MFZ6 Putative uncharacterized protein n=1 Tax=Anaeros... 326 3e-87 UniRef50_C4V2W5 CRISPR-associated helicase Cas3 n=2 Tax=Selenomo... 326 3e-87 UniRef50_B5JKF7 CRISPR-associated helicase Cas3 domain protein n... 326 3e-87 UniRef50_D2QT48 CRISPR-associated helicase Cas3 n=1 Tax=Spirosom... 325 6e-87 UniRef50_C5UTG9 Metal dependent phosphohydrolase n=1 Tax=Clostri... 324 7e-87 UniRef50_B3EG04 CRISPR-associated helicase Cas3 n=3 Tax=cellular... 324 7e-87 UniRef50_C9M4Z3 CRISPR-associated helicase Cas3 domain protein n... 324 7e-87 UniRef50_B0MPS6 Putative uncharacterized protein n=1 Tax=Eubacte... 324 7e-87 UniRef50_A7HLK7 CRISPR-associated helicase Cas3 n=5 Tax=Bacteria... 324 1e-86 UniRef50_UPI000197377D putative helicase n=1 Tax=Clostridium sp.... 323 2e-86 UniRef50_Q0AZP4 CRISPR-associated helicase, Cas3 family n=1 Tax=... 323 2e-86 UniRef50_Q57821 Uncharacterized protein MJ0376 n=3 Tax=Methanoca... 323 2e-86 UniRef50_C7INB9 Metal dependent phosphohydrolase n=1 Tax=Clostri... 323 2e-86 UniRef50_C1QDM1 CRISPR-associated helicase Cas3/CRISPR-associate... 322 3e-86 UniRef50_C0EXP0 Putative uncharacterized protein n=1 Tax=Eubacte... 322 4e-86 UniRef50_C6QYT7 CRISPR-associated helicase Cas3 domain protein n... 322 4e-86 UniRef50_Q3AA66 CRISPR-associated helicase Cas3 n=1 Tax=Carboxyd... 322 5e-86 UniRef50_O27158 Conserved protein n=1 Tax=Methanothermobacter th... 322 5e-86 UniRef50_C4ZG22 Predicted helicase n=1 Tax=Eubacterium rectale A... 321 7e-86 UniRef50_A9GZW0 Metal dependent phosphohydrolase n=3 Tax=Proteob... 321 9e-86 UniRef50_C3X326 Crispr-associated helicase cas3 n=1 Tax=Oxalobac... 320 1e-85 UniRef50_C9LYV3 CRISPR-associated helicase Cas3 n=1 Tax=Selenomo... 320 2e-85 UniRef50_C8W344 CRISPR-associated helicase Cas3 n=1 Tax=Desulfot... 320 2e-85 UniRef50_A6TNS1 CRISPR-associated helicase Cas3 n=1 Tax=Alkaliph... 319 3e-85 UniRef50_B5YIV2 CRISPR-associated helicase Cas3 n=1 Tax=Thermode... 319 3e-85 UniRef50_C6MZR6 CRISPR-associated helicase Cas3 n=1 Tax=Legionel... 319 3e-85 UniRef50_Q2NH80 Predicted helicase n=1 Tax=Methanosphaera stadtm... 319 4e-85 UniRef50_UPI0001BC6554 ATP-dependent RNA helicase n=3 Tax=Fusoba... 318 5e-85 UniRef50_Q0SUG1 CRISPR-associated helicase Cas3 domain protein n... 318 7e-85 UniRef50_B2RM87 Probable CRISPR-associated helicase Cas3 core n=... 317 2e-84 UniRef50_Q2LX11 ATP-dependent RNA helicase n=3 Tax=Proteobacteri... 316 2e-84 UniRef50_A7GQ88 CRISPR-associated helicase Cas3 n=1 Tax=Bacillus... 316 2e-84 UniRef50_B9MPU0 CRISPR-associated helicase Cas3 n=1 Tax=Anaeroce... 316 2e-84 UniRef50_C0EDE1 Putative uncharacterized protein n=1 Tax=Clostri... 314 1e-83 UniRef50_C8WIK3 Metal dependent phosphohydrolase n=1 Tax=Eggerth... 313 2e-83 UniRef50_Q3ARV3 CRISPR-associated helicase Cas3, core n=1 Tax=Ch... 313 2e-83 UniRef50_B1I5P0 Metal dependent phosphohydrolase n=2 Tax=Clostri... 311 6e-83 UniRef50_C0GMN4 CRISPR-associated helicase Cas3 n=1 Tax=Desulfon... 311 7e-83 UniRef50_A1HND8 CRISPR-associated helicase Cas3 n=1 Tax=Thermosi... 311 1e-82 UniRef50_A8TD04 CRISPR-associated helicase Cas3 n=1 Tax=Methanoc... 309 2e-82 UniRef50_A5D0R9 Predicted helicases n=1 Tax=Pelotomaculum thermo... 309 4e-82 UniRef50_A1TU75 Metal dependent phosphohydrolase n=25 Tax=Proteo... 308 6e-82 UniRef50_UPI0001BC52A9 metal dependent phosphohydrolase n=1 Tax=... 307 9e-82 UniRef50_Q5JGA4 DEAD/DEAH box helicase, fused to N-terminal HD d... 307 9e-82 UniRef50_Q746C3 Hypothetical conserved protein n=2 Tax=Bacteria ... 307 9e-82 UniRef50_B1YHA2 Metal dependent phosphohydrolase n=1 Tax=Exiguob... 307 9e-82 UniRef50_C8VZL0 CRISPR-associated helicase Cas3 n=1 Tax=Desulfot... 306 2e-81 UniRef50_B1C2J7 Putative uncharacterized protein n=1 Tax=Clostri... 306 2e-81 UniRef50_Q39WS0 Metal dependent phosphohydrolase n=6 Tax=Bacteri... 306 2e-81 UniRef50_B9L1B9 CRISPR-associated helicase Cas3 domain protein n... 306 2e-81 UniRef50_B0KB27 CRISPR-associated helicase Cas3 n=7 Tax=Bacteria... 306 2e-81 UniRef50_UPI0001C41C2F CRISPR-associated helicase Cas3 n=1 Tax=M... 306 4e-81 UniRef50_UPI0000F51764 CRISPR-associated helicase Cas3 n=1 Tax=F... 303 2e-80 UniRef50_C9M4E9 CRISPR-associated helicase cas3 domain protein n... 303 2e-80 UniRef50_B9YDC8 Putative uncharacterized protein n=1 Tax=Holdema... 302 3e-80 UniRef50_Q2RW66 CRISPR-associated helicase, Cas3 family n=5 Tax=... 302 3e-80 UniRef50_Q184G8 Putative uncharacterized protein n=7 Tax=Clostri... 302 3e-80 UniRef50_Q2J7P4 CRISPR-associated helicase Cas3, core n=1 Tax=Fr... 302 5e-80 UniRef50_A5ILM5 CRISPR-associated helicase, Cas3 family n=4 Tax=... 302 6e-80 UniRef50_Q2RHQ9 CRISPR-associated helicase Cas3 n=1 Tax=Moorella... 301 6e-80 UniRef50_UPI0000F51713 CRISPR-associated helicase Cas3 n=1 Tax=F... 301 8e-80 UniRef50_D1JP52 Metal dependent phosphohydrolase n=2 Tax=Bactero... 301 9e-80 UniRef50_O57915 Putative uncharacterized protein PH0176 n=1 Tax=... 300 2e-79 UniRef50_B3QT88 Metal dependent phosphohydrolase n=3 Tax=Bacteri... 300 2e-79 UniRef50_A4XGC8 CRISPR-associated helicase Cas3 n=1 Tax=Caldicel... 299 2e-79 UniRef50_C6PBT9 CRISPR-associated helicase Cas3 n=1 Tax=Thermoan... 299 3e-79 UniRef50_B5YBH9 CRISPR-associated helicase Cas3 n=1 Tax=Dictyogl... 299 4e-79 UniRef50_C4IBN7 Crispr-associated helicase Cas3 n=1 Tax=Clostrid... 298 7e-79 UniRef50_D1A6P6 Metal dependent phosphohydrolase n=1 Tax=Thermom... 297 1e-78 UniRef50_D1QSB0 DEAD/DEAH box helicase n=1 Tax=Prevotella oris F... 297 1e-78 UniRef50_B7R551 CRISPR-associated helicase Cas3 domain protein n... 297 1e-78 UniRef50_Q74N41 NEQ022 n=1 Tax=Nanoarchaeum equitans RepID=Q74N4... 297 2e-78 UniRef50_C3RBZ9 Crispr-associated helicase cas3 n=7 Tax=Bacteroi... 296 2e-78 UniRef50_B8CYA2 CRISPR-associated helicase Cas3 n=1 Tax=Halother... 296 2e-78 UniRef50_B0NF41 Putative uncharacterized protein n=2 Tax=Clostri... 295 5e-78 UniRef50_A6UVX5 CRISPR-associated helicase Cas3 n=2 Tax=Methanoc... 295 6e-78 UniRef50_Q3B3C6 CRISPR-associated helicase, Cas3 family n=1 Tax=... 294 1e-77 UniRef50_A4FXZ4 CRISPR-associated helicase, Cas3 family n=1 Tax=... 293 2e-77 UniRef50_A0B6V7 CRISPR-associated helicase Cas3 n=1 Tax=Methanos... 293 2e-77 UniRef50_Q1CWU0 CRISPR-associated helicase Cas3 n=1 Tax=Myxococc... 292 5e-77 UniRef50_C1TQC9 CRISPR-associated helicase Cas3 n=1 Tax=Dethiosu... 291 6e-77 UniRef50_A0Q254 CRISPR-associated helicase Cas3 n=2 Tax=Clostrid... 291 7e-77 UniRef50_C7NNV2 Putative helicase n=2 Tax=Halobacteriaceae RepID... 291 7e-77 UniRef50_A8UUT3 Predicted helicase n=1 Tax=Hydrogenivirga sp. 12... 291 1e-76 UniRef50_D1VVR9 Crispr-associated helicase Cas3 core n=1 Tax=Pep... 289 4e-76 UniRef50_Q182D7 Probable ATP-dependent helicase n=11 Tax=Clostri... 289 4e-76 UniRef50_D1Y4A6 Crispr-associated helicase Cas3 n=1 Tax=Pyramido... 288 5e-76 UniRef50_B9KL20 CRISPR-associated helicase, Cas3 family n=1 Tax=... 288 6e-76 UniRef50_C5VU02 Crispr-associated helicase Cas3 n=1 Tax=Clostrid... 287 9e-76 UniRef50_D2RJ92 Metal dependent phosphohydrolase n=1 Tax=Acidami... 287 1e-75 UniRef50_B5IGN2 CRISPR-associated helicase Cas3 domain protein n... 286 2e-75 UniRef50_B7GIV6 CRISPR-associated protein Cas3 n=3 Tax=Bacillace... 286 3e-75 UniRef50_B5GV92 Crispr-associated helicase cas3 n=1 Tax=Streptom... 286 3e-75 UniRef50_A8L914 CRISPR-associated helicase Cas3 n=5 Tax=Actinomy... 285 5e-75 UniRef50_C9RCY3 CRISPR-associated helicase Cas3 n=2 Tax=Thermoan... 284 7e-75 UniRef50_A6UNS0 CRISPR-associated helicase Cas3 n=2 Tax=cellular... 284 1e-74 UniRef50_Q1JFX2 ATP-dependent RNA helicase n=13 Tax=Streptococcu... 283 2e-74 UniRef50_A8F3N9 CRISPR-associated helicase Cas3 n=1 Tax=Thermoto... 283 3e-74 UniRef50_B4VYG3 CRISPR-associated helicase Cas3 domain protein n... 283 3e-74 UniRef50_B1LAM3 CRISPR-associated HD domain protein n=2 Tax=Ther... 282 3e-74 UniRef50_C1XVN4 Uncharacterized domain HDIG-containing protein n... 282 3e-74 Sequences not found previously or not previously below threshold: >UniRef50_P38036 Uncharacterized protein ygcB n=13 Tax=Enterobacteriaceae RepID=YGCB_ECOLI Length = 888 Score = 909 bits (2348), Expect = 0.0, Method: Composition-based stats. Identities = 888/888 (100%), Positives = 888/888 (100%) Query: 1 MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSK 60 MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSK Sbjct: 1 MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSK 60 Query: 61 QRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLY 120 QRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLY Sbjct: 61 QRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLY 120 Query: 121 WFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASL 180 WFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASL Sbjct: 121 WFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASL 180 Query: 181 ASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTF 240 ASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTF Sbjct: 181 ASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTF 240 Query: 241 LFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLV 300 LFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLV Sbjct: 241 LFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLV 300 Query: 301 DALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEAS 360 DALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEAS Sbjct: 301 DALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEAS 360 Query: 361 ASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIG 420 ASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIG Sbjct: 361 ASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIG 420 Query: 421 VCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVI 480 VCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVI Sbjct: 421 VCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVI 480 Query: 481 LLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSI 540 LLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSI Sbjct: 481 LLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSI 540 Query: 541 QPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLF 600 QPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLF Sbjct: 541 QPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLF 600 Query: 601 HARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLF 660 HARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLF Sbjct: 601 HARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLF 660 Query: 661 QRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGAS 720 QRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGAS Sbjct: 661 QRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGAS 720 Query: 721 LFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDND 780 LFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDND Sbjct: 721 LFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDND 780 Query: 781 ETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRS 840 ETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRS Sbjct: 781 ETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRS 840 Query: 841 FSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMTRVIPANPK 888 FSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMTRVIPANPK Sbjct: 841 FSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMTRVIPANPK 888 >UniRef50_Q1JX05 CRISPR-associated helicase Cas3, core n=2 Tax=Desulfuromonadales RepID=Q1JX05_DESAC Length = 885 Score = 611 bits (1575), Expect = e-173, Method: Composition-based stats. Identities = 420/898 (46%), Positives = 549/898 (61%), Gaps = 33/898 (3%) Query: 1 MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSK 60 ME K+ YWGK+++ HLL YHCLDVAAVA WW+ S +++ FC+ + Sbjct: 1 MEFVKFYA-YWGKTAE----DGRYHLLPYHCLDVAAVAAAWWNASFAIRHRFCQ--GQDE 53 Query: 61 QRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLY 120 R++AWLLFF ALHD GKFD+RFQ KS ++ +L + + PS + + HG AGLY Sbjct: 54 TRIRAWLLFFCALHDYGKFDLRFQLKSHPAFKQLYGFSDGIL-PSKNESKDYWHGEAGLY 112 Query: 121 WFNQDSLS---EQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMP 177 WF+ D L E GD + P + ++ PW+EAVTGHHG + ++ + Sbjct: 113 WFHNDILELFGEGDTGDSLFVDENDPEQWAAFKPWIEAVTGHHGHLKNADYLRDLSFSSQ 172 Query: 178 ASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCS----SLLAGFCSLADWLGS 233 YA+ D ++R W+ LE LFLTPAGLS+ PP S LAGFCS+ADWLGS Sbjct: 173 VD-DRYASIDFKSRVAWLYALEKLFLTPAGLSMTSEPPCLSSYQAVFLAGFCSVADWLGS 231 Query: 234 WTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQP 293 F F E + DA RVL+LSGL+ + + GV ALL G P Sbjct: 232 RCDDTDFSFLETPQDLQSYFEG---KIAADAQRVLQLSGLIGQPKSFSGVAALLPAGKPP 288 Query: 294 RQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAM 353 R LQ L + LP P LT+IEAPTG+GKTE ALA+AWK++D +A+++IFALPTQATANAM Sbjct: 289 RPLQCLTENLPANPSLTIIEAPTGNGKTEAALAHAWKIVDSGLAEAIIFALPTQATANAM 348 Query: 354 LTRMEASASHLFSS-PNLILAHGNSRFNHLFQSIKSRAITEQGQE-EAWVQCCQWLSQSN 411 R+E +A LF+ PNL+LAHG +RFN F +K R E G E + WV+C +WL++S Sbjct: 349 FGRLEKAAKILFADSPNLLLAHGFARFNEPFAELKKRGRVEDGDEQDGWVKCSEWLAESR 408 Query: 412 KKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKA 471 K+VFLGQIGVCTIDQVLISVLPV+HRF+RG G+GRSVLIVDEVHAYD YM GLLE VL+ Sbjct: 409 KRVFLGQIGVCTIDQVLISVLPVRHRFVRGFGVGRSVLIVDEVHAYDAYMYGLLEEVLRQ 468 Query: 472 QADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHP 531 Q GGS ILLSATLP QKQ L + +YPLI+ L Sbjct: 469 QRASGGSAILLSATLPFHQKQHLFSAWDSDLPESRERDSYPLISCATNREVLPLSLAEDD 528 Query: 532 EQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELN 591 E P ++ E + M+PD +++ER+IAAA AGAQV +ICNLVDVAQ Y++LK+ Sbjct: 529 EPDP--LTVNVECVRFDGMVPDASLIERLIAAAAAGAQVAVICNLVDVAQNLYEQLKKQA 586 Query: 592 NT-QVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLI 650 + +DLFHARF DR+ KE VI FG NG R GRILVATQVVEQSLDVDFDW+I Sbjct: 587 KEASITVDLFHARFRFLDRQVKEQSVIHTFGLNGNRKKGRILVATQVVEQSLDVDFDWII 646 Query: 651 TQHCPADLLFQRLGRLHRH--HRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWR 708 TQ CP DLLFQR+GRLHRH + RPA F + T++LP + YG +Y N RV+WR Sbjct: 647 TQLCPIDLLFQRMGRLHRHEINDATRPAAFSKRLCTVVLPTDDDYGGTAVVYGNKRVLWR 706 Query: 709 TQQHIEELNGASLFFPDAYRQWLDSIYDDAEMD-EPEWVGNGMDKFESAECEKRFKARKV 767 T+Q + E + FP AYR ++ Y EPE + +FE K +KAR+ Sbjct: 707 TEQILAE--SEQIVFPVAYRTQIEKAYQQEPWPYEPEEITEANREFEDEIYIKGYKARQA 764 Query: 768 LQWAEEYS-LQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEAL 826 + A + + D+DE+I AVTRDGEMSL ++PY+ + +G++ LDG + + L + E L Sbjct: 765 VNMARDSNPFVDSDESITAVTRDGEMSLTVIPYLDSDAGRRTLDGDLLDSLDEYRLLEIL 824 Query: 827 ALNRVNVP--FTWKRSFSEV-VDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMTR 881 ALN +NVP WK + +V + ED WL + +G++ +G + Y D G+ R Sbjct: 825 ALNSINVPGTGGWKGALKDVPLGEDKRYWLNMQPTREGFIAEGIQTIFRYHRDTGLRR 882 >UniRef50_C5SD53 CRISPR-associated helicase Cas3 n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SD53_CHRVI Length = 877 Score = 597 bits (1539), Expect = e-169, Method: Composition-based stats. Identities = 365/891 (40%), Positives = 497/891 (55%), Gaps = 40/891 (4%) Query: 3 PFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQR 62 K YW K+ + N H YH LD A +A +W S ++ T + + Sbjct: 2 LSKDYWRYWAKADTGVEGANKWHPFAYHSLDAAVIAATFWRDSSAVRRTLMAAFDVEEAE 61 Query: 63 VKAWLLFF---IALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGL 119 ++ L + +ALHDIGK FQ K+ ++ P S T ++HG G Sbjct: 62 IQRLLAWILFFVALHDIGKLHALFQIKAPHILPQIWPDLASTKLIDT-SGGHYDHGREGY 120 Query: 120 YWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPAS 179 + F A+ H ++W W+ AVTGHHG I + D + E Sbjct: 121 RLSMAELRGW--------FKPASRHALKAWSSWLAAVTGHHGEIPDNDDPLPAYAE---- 168 Query: 180 LASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPD----CSSLLAGFCSLADWLGSWT 235 A+ QD AR WI LFL PAGLS+ D PP +LLAGFCSL DW+GS Sbjct: 169 -ATILEQDANARRAWIQEAADLFLHPAGLSLEDPPPPCVTEARNLLAGFCSLCDWIGSNV 227 Query: 236 TTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQ 295 + A S + L + + ++D +L GL++ Y+G+ ALL PR Sbjct: 228 DVFAYAPP--ALSPNDYLHSRLEQIRRD--DILRHFGLIATPLAYQGIPALLKTDEHPRG 283 Query: 296 LQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLT 355 QV++D LP+ PGLT++EAPTGSGKTE ALAYAW+LID +A+S++FALPTQATANAML Sbjct: 284 TQVMIDDLPLVPGLTIVEAPTGSGKTEAALAYAWRLIDAGLAESIVFALPTQATANAMLG 343 Query: 356 RMEASASHLFSSPNLILAHGNSRFNHLFQSI--KSRAITEQGQEEAWVQCCQWLSQSNKK 413 R E + F NL+LAHG+SR N +Q + T QG+ EA VQC WL+ S K+ Sbjct: 344 RCETFSKSAFGRANLVLAHGHSRLNQAYQRLIEAGSKRTAQGETEAGVQCAAWLASSRKR 403 Query: 414 VFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQA 473 VFLGQIGVCT+DQVL+SVLPV+H F+R G+ RSVLIVDEVHAYD YMNGLL VLK Q Sbjct: 404 VFLGQIGVCTVDQVLLSVLPVRHNFVRAFGLHRSVLIVDEVHAYDAYMNGLLIEVLKRQK 463 Query: 474 DVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQ 533 VGGS ILLSATLP + KLL+++G +PV + + YP I L + Sbjct: 464 AVGGSAILLSATLPASIRGKLLESWGH--EPVADVANYPAIWNTAALSESDSPLSLPDTE 521 Query: 534 LPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNT 593 P + +I+ L PD +++R+I AA +GA V ++ N VD AQ + +L + N Sbjct: 522 RPAQRTIEVSLSKLGGACPDEPLIQRIIDAAESGALVGIVMNTVDDAQQLWIQLHK--NA 579 Query: 594 QVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQH 653 QV +DLFHARF L DR+ E RVI ++G++ +R GRILVATQV+EQSLD+DFDWLITQ Sbjct: 580 QVPVDLFHARFRLQDRQRIEQRVIEHYGRDAERTQGRILVATQVIEQSLDLDFDWLITQL 639 Query: 654 CPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHI 713 CP DLLFQRLGRLHRH RK RP F++P T+L + + YG HE IY + R++WRT+ + Sbjct: 640 CPVDLLFQRLGRLHRHSRK-RPDDFQVPTCTVLSVETDDYGLHELIYGDARLLWRTEFLL 698 Query: 714 EELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEE 773 + FP AYR+W++ +Y +A D+ G + + K L Sbjct: 699 ARHK--QIHFPAAYREWIEPVYGEAPWDDEPGTVYGKHLAWRDDQSEAEKKAHRLTTMNL 756 Query: 774 YSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNV 833 +D++E + ++TRDGEMSL +L T +LLDG+ + + Q E L LN V Sbjct: 757 SKFRDDEERLTSLTRDGEMSLSVLL---TREDGRLLDGEDPDQMDEYTQAETLMLNTVPA 813 Query: 834 PFTW--KRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMTRV 882 P +W ++ V DEDG + L+ + W + YT + G+ + Sbjct: 814 PHSWGDRQLAGHVRDEDGRIRLKM-HDDGQQRWSSLDGGVCYTTELGLAKA 863 >UniRef50_Q04QC1 Helicase n=2 Tax=Leptospira borgpetersenii serovar Hardjo-bovis RepID=Q04QC1_LEPBJ Length = 931 Score = 528 bits (1360), Expect = e-148, Method: Composition-based stats. Identities = 236/953 (24%), Positives = 380/953 (39%), Gaps = 103/953 (10%) Query: 4 FKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRV 63 K YWGK+ K + +LL YHC DVAAV + + Q+ L F R + Sbjct: 5 VKSYYKYWGKADK----EGNYYLLAYHCFDVAAVGEVYLSQNETLCTHFSRKLGIDPITF 60 Query: 64 KAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFN 123 K +FF+ LHD+GKF FQ L+ + P + H + G ++ Sbjct: 61 KNLFVFFLVLHDLGKFSDCFQSLIPNVKSALDNSNPPI------GSYSIRHDSLGYIFWG 114 Query: 124 QDSLSEQSLGDFFSFFDAAPHPY--------------ESWFPWVEAVTGHHGFILHSQDQ 169 + L ++ G++ E + VTGHHG Sbjct: 115 KWILKDERFGNYDGLLTEQNWLSWNGLRSSKDKSYFTEFLDVLIRCVTGHHGRPPSKNGY 174 Query: 170 DKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPP-----DCSSLLAGF 224 S + D+ A ++ + + + S LAG Sbjct: 175 SGQTAVSLDS--HFTEADRSAALDFSKEVNRILSPNLNFDGDFKTLYNSALRISFWLAGL 232 Query: 225 CSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVH 284 L DW+GS + + I+ Y + + A + SGL+ +K + H Sbjct: 233 SVLCDWIGSNAEIFKY-----HQTPIDLEEYYTKISLKRALDAINRSGLLPSKITFNKDH 287 Query: 285 AL-LDNGYQPRQLQVLVDA--LPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVI 341 + +P LQ +P +P L ++E TGSGKTE AL +L+ + Sbjct: 288 FRIFEYLREPTPLQKFCSEVAIPDSPSLFILEDVTGSGKTEAALILTHRLMQKSAYSGFY 347 Query: 342 FALPTQATANAMLTRMEASASHLFSSPNL---ILAHGNSRFNHLFQSIKSRA-------- 390 LPT ATAN M RM +L++ ++ +LAHG + FQS Sbjct: 348 VGLPTMATANGMYQRMSGVYRNLYTKESIPSLVLAHGARNLSDSFQSSVISDNAILTDRN 407 Query: 391 ----ITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGR 446 + + +E A C WLS + KK L GV TIDQ L+S+L K + +R G+ R Sbjct: 408 YSLQLDKDPEESASAICNVWLSDNQKKSLLADAGVGTIDQALLSILSTKFQSLRMFGLSR 467 Query: 447 SVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVE 506 VLI+DEVH+YD YM L+ +LKAQA +G SVILLSATLP ++ +++ L D Sbjct: 468 KVLILDEVHSYDPYMVELICCLLKAQAKIGASVILLSATLPKILRKTFSESFALGLDTEL 527 Query: 507 NN---SAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAA 563 + YPL++ ++ +++ + +++ + +L++++ Sbjct: 528 QDLKSVEYPLVSLISDRSEVEEIPISTRKEVSRKLNVKF-------LFNQEQVLQKILEM 580 Query: 564 ANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKN 623 +N G VC I N V A + L Q + LFHARF + DR E++++ NFG Sbjct: 581 SNQGRCVCWIRNTVSDASQAFSFLHSKLGDQ--VILFHARFVMGDRLSIESQILENFGVR 638 Query: 624 GKRN--VGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRP------ 675 +N G+++VATQVVEQSLD+DFD +IT P DL+ QR GRLHRH R Sbjct: 639 SDQNSRKGKVVVATQVVEQSLDLDFDCIITDLAPIDLILQRAGRLHRHCRDIFGNAKQGL 698 Query: 676 AGFEIPVATILLPDG----------EGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPD 725 P+ I P+ + +YS+ +W T + ++E G P+ Sbjct: 699 DERGEPILWIFSPEPIEDPTSNWFSQFSRGGSMVYSDHGRLWLTAKLLQERKG--WRMPE 756 Query: 726 AYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDND---ET 782 R ++S+Y + N + + A + Y N+ + Sbjct: 757 DARNLIESVYGIDVEIPQSFRENQFKVKNDKKKLESAAALSTIHLELGYDSTLNETSWDD 816 Query: 783 ILAVTRDGEMSLP--LLPYVQTSSGKQLLDGQVYED------LSHEQQYEALALNRVNVP 834 TR G + +L + + G + + + + + +N Sbjct: 817 SKFSTRYGIDNSSKAVLAKFVSDRLVPWISGTTRDWQNSELPVPNYLVEKEVIFENLNFS 876 Query: 835 FTWKRSFSEVVDEDGL-LWLEGKQNLDGWVWQGNS-----IVITYTGDEGMTR 881 + D+ + L + W + + + TY G + Sbjct: 877 EVIFNCKKNLPDKGKHCVLLPLFYTNNSWRGKALNKKNEVVSFTYDERFGFRK 929 >UniRef50_D1CGD0 CRISPR-associated helicase Cas3 n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CGD0_THET1 Length = 944 Score = 525 bits (1351), Expect = e-147, Method: Composition-based stats. Identities = 223/930 (23%), Positives = 351/930 (37%), Gaps = 99/930 (10%) Query: 10 YWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVV--LQNTFCRNEMLSKQRVKAWL 67 +W K H L+ H LDVAAV W + + + + ++ + WL Sbjct: 34 FWAK--WGSGPDLGWHPLLCHMLDVAAVTLQMWRRVLPAAWKARISGVLGVGQEDAERWL 91 Query: 68 LFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSL 127 FF HDIGK FQ + + A + + HG ++ Sbjct: 92 AFFAGGHDIGKASPAFQLQLRPEQGRELVARRLRDAGLPLFNARAPHGTISA------NV 145 Query: 128 SEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQD 187 E L D F S AV GHHGF+ + A Sbjct: 146 LETVLADVFGL------SGRSARWVAFAVGGHHGFVPSYDEV----RRDLDQQAVGWGMW 195 Query: 188 KQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAP 247 ARE + L P + +LAG S+ADW+GS + Sbjct: 196 DAAREVLLCRLADALGLPGSSRPTVESTPDAFMLAGLVSVADWIGSNEEYFPYAAQSALQ 255 Query: 248 SDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVH--ALLDNGYQPRQLQVLVDALP- 304 Y + + A R + G V + + L QP +Q + L Sbjct: 256 VPQLDAEAYLERAMRQAERAMASLGWVGWRPASGSMRLTELFPYIRQPTTVQAAAEELAG 315 Query: 305 --VAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASAS 362 +P +T+IEAP G GKTE A+ A FALPT AT+N M R+ Sbjct: 316 EVKSPSITIIEAPMGEGKTEAAMLLADTFSTAHGMSGCYFALPTMATSNQMFGRVTDYLR 375 Query: 363 HLFSSPNLI--LAHGNSRFNHLFQSIKSRA----------ITEQGQEEAWVQCCQWLSQS 410 H + ++ L HG+S + L Q ++ + G E+ Sbjct: 376 HRYPEDVVVVNLVHGHSDLSALLQELRQKGEEIFQLQGVYDEALGDEQLGAVVAGQWFTR 435 Query: 411 NKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLK 470 K+ L GV T+DQ L++VL VKH F+R + +IVDEVHAYD YM LL +L+ Sbjct: 436 GKRALLPPYGVGTVDQALLAVLQVKHVFVRLFALSTKTVIVDEVHAYDVYMTTLLHRLLE 495 Query: 471 AQADVGGSVILLSATLPMKQKQKLLDTYGLH----TDPVENNSAYPLINWRGVNGAQRFD 526 + V++LSATLP ++++L+ Y + + YP I + + Sbjct: 496 WLGALSVPVVVLSATLPSARRRELVKAYARGAGWQAERDLPPAGYPRITYAAAEDVRGIH 555 Query: 527 LLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQR 586 S + + + + + A + G +ICN V AQ Y Sbjct: 556 FAPSEA------SRRKVALRWVSAPEHEALGQLLAEALSQGGCAAIICNTVPRAQALYSA 609 Query: 587 LKELNN-----TQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQS 641 L+E+ ++DL HAR+ +R +E R + F +NG+R ILVATQV+EQS Sbjct: 610 LREVFPGLAEDGMPELDLLHARYPYEEREVREARTLGRFSRNGRRPHRAILVATQVIEQS 669 Query: 642 LDVDFDWLITQHCPADLLFQRLGRLHRH--HRKYRPAGFEIPVATILLP----DGEGYGR 695 LD+DFD ++T P DL+ QR+GRLHRH H RP P ++ P D + R Sbjct: 670 LDLDFDLMVTDLAPVDLVLQRMGRLHRHPVHDPLRPERLRSPELWVVSPQVMGDVPIFDR 729 Query: 696 HEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFES 755 + + R+ + + + +L P+ + ++ +Y D + P+ + Sbjct: 730 GSASVYDEHTLLRSWLALRDRD--TLQLPEDIEELVEQVYSDGRV--PQGASEELRSLWE 785 Query: 756 AECEKRFKARKVLQWAEEYSLQ---------------------DNDETILAVTRDGEMSL 794 + + K + +Y + + A+TR E S+ Sbjct: 786 RTFKAQQKVLREDSLQAKYRYIKGPGYNSIWGIVTASVEEDAPELHPALQALTRLAEPSV 845 Query: 795 PLLPYVQTSSGKQLLDGQVYE-------DLSHEQQYEALA---------LNRVNVPFTWK 838 + V S G L DG + ++ ++A L V VP W+ Sbjct: 846 SAVCLVAGSGGPCLPDGTPVDLDTPPDAAMAERLLRRSVAITDARVLDPLLDVPVPKGWE 905 Query: 839 RSFSEVVDEDGLLWLEGKQNLDGWVWQGNS 868 RS + G+ + W+ + + Sbjct: 906 RSSLLRGYRPLVFDASGRAMVGRWIVRIDP 935 >UniRef50_Q2JWC1 CRISPR-associated helicase Cas3 n=2 Tax=Chroococcales RepID=Q2JWC1_SYNJA Length = 893 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 232/922 (25%), Positives = 357/922 (38%), Gaps = 89/922 (9%) Query: 9 HYWGKSSKSLTKGND---IHLLIYHCLDVAAVADCWWDQSVVLQNT--FCRNEMLSKQRV 63 +W K+ + + + H ++ H D AAVA + L + Sbjct: 5 RFWAKTGQGQLREDGRPLYHPVLCHLADTAAVAMEIVQTYLSPLARQQLSVGLGLEGDPL 64 Query: 64 KAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPS-TQMCRKFNHGAAGLYWF 122 + F HD+GK FQ++ +E L + S + HG Sbjct: 65 ARFCGFMAGCHDLGKVSPAFQFQVSEVGKALVGSRLYGLWRSYPNTGQAAPHGTVTAATL 124 Query: 123 NQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLAS 182 F + P + V GHHGF QD + + Sbjct: 125 P-------------GFLEELGLPKKLAQKLSAIVGGHHGFFPGLQDI-----QSLSPDDV 166 Query: 183 YAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLF 242 + R E L+ + +LAG ++ADW+ S T + + Sbjct: 167 GRGEWIPFRREIFQQLQDFVGLKREGIPGRCSNSAAMILAGLATVADWIASNTESFPYAN 226 Query: 243 NEDAPSDINALRTYFQDRQQDASRVLELSGLVSNK-RCYEGVHALLDNGYQPRQLQVLVD 301 + TY Q + A + L+ G ++ AL D +PR LQ+ Sbjct: 227 D-------EPFETYAQGIAEKAQQALKAQGWIAPPTDSPLTFQALFDFISEPRPLQLAAI 279 Query: 302 ALPVA---PGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRME 358 L P L ++EA G GKTE AL A L Q A LPTQAT+NAM R++ Sbjct: 280 NLKDRLAPPCLVIVEAAMGEGKTEAALYLADHLQHQAGAGGFYIGLPTQATSNAMFERVK 339 Query: 359 ASASHLFSSP--NLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFL 416 + + NL L+HG + + R QE V +W + + K+ L Sbjct: 340 SFLQKRYPDAIVNLTLSHGAAALKEDYLDTVCRLDQVYDQEGKGVFASEWHT-ARKRTLL 398 Query: 417 GQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVG 476 GV T DQ L+ + +H+F+R G+ ++I+DE+HAYD Y + LLE L+ A +G Sbjct: 399 SPYGVGTPDQALMGAVRARHQFVRLFGLAGRIIILDEIHAYDLYTSTLLERFLEWAAVLG 458 Query: 477 GSVILLSATLPMKQKQKLLDTYGLH---TDPVENNSAYPLINWRGVNGAQRFDLLAHPEQ 533 VI LSATLP +Q+LL Y P N+ YP I A Sbjct: 459 SPVIALSATLPAGTRQRLLAAYARGCGQPPPDSPNAPYPRITALASGAALAQSFAPSEH- 517 Query: 534 LPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNT 593 + + + D E + G V +IC+ VD AQ +Q L++ Sbjct: 518 -------VRRQLGIRWVRDDQWPAELSQVLSKGGGCVAVICSTVDRAQWVFQHLQKYFPP 570 Query: 594 QVDIDLFHARFTLNDRREKENRVISNFGKNGK-RNVGRILVATQVVEQSLDVDFDWLITQ 652 + ++ LFH RF DR + E + + FGKNG R +LVATQV+EQSLDVDFD +I+ Sbjct: 571 E-ELGLFHGRFLFKDREQIEKQCLERFGKNGHLRPSRFVLVATQVIEQSLDVDFDLMISD 629 Query: 653 HCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPD-----GEGYGRHEHIYSNVRVMW 707 P DLL QR GRLHRH R RP P I+ P+ + IY + ++ Sbjct: 630 PAPIDLLLQRSGRLHRHPRDKRPPELSAPYLWIVEPELAEEGKANFRESSSIY-DRHILL 688 Query: 708 RTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEW-------VGNGMDKFESAECEK 760 R+ + E L P+ ++S+YD ++K++ E + Sbjct: 689 RSWLALRERCNVQL--PEEIDDLIESVYDLEMPIPEALETVHAQDWRESLEKYKVEEEDA 746 Query: 761 RFKARKVLQW--------AEEYSL---QDNDETILAVTRDGEMSLPLLPYVQTSSGKQLL 809 + ++ E+++ +D++ TI AVTR G+ S+ + Q +G Sbjct: 747 KRSRANEVKIPPPNADVRPEQFTYLKKEDDESTIAAVTRLGQPSVATIFLQQGKTGLVFP 806 Query: 810 DGQVYEDLSHE---QQYEALALNRVNVPFTWKRSFSEVVDEDGLLW--------LEGKQN 858 DL E L + V + + + E+ W N Sbjct: 807 GSHDPVDLETEPSLPMIRRLLAHSVRIASRQELVKELLRRENPKTWTSALLRNCRYVVLN 866 Query: 859 LDGWVWQGNSIVITYTGDEGMT 880 +GW Q + + G+T Sbjct: 867 AEGWA-QVGKWRLRLDPNLGIT 887 >UniRef50_B3E5V3 CRISPR-associated helicase Cas3 n=3 Tax=Deltaproteobacteria RepID=B3E5V3_GEOLS Length = 906 Score = 521 bits (1341), Expect = e-146, Method: Composition-based stats. Identities = 261/937 (27%), Positives = 410/937 (43%), Gaps = 106/937 (11%) Query: 4 FKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRV 63 + YWGK+ G HLL YHCLDVAAV +D L + ++ + Sbjct: 1 MQPYFQYWGKA---EKDGLRYHLLPYHCLDVAAVGWLLFDPEKPLCKRLAKQLEIAPAHL 57 Query: 64 KAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFN 123 + W+ FF+ LHDIGKF + FQ + L P+++ + H + G + Sbjct: 58 QRWITFFLCLHDIGKFAVVFQGQVTGLSD-------DLVKPNSRKRYEERHDSLGYCLWR 110 Query: 124 QDSLSEQSLG---DFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASL 180 + L F + H + W++ VTGHHG D + + Sbjct: 111 AEDGLRDRLEMEDSCFLSRSNSRHLKLALDIWMQIVTGHHGIPPK-TDLHLTNY------ 163 Query: 181 ASYAAQDKQAREEWISVLEALFLTPAGLSIND------IPPDCSSLLAGFCSLADWLGSW 234 + +QD +A +++ + +F+ +++ S +LAG LADWLGS Sbjct: 164 --FDSQDNEAAWQYLLEISRMFVVDEMVAVLSDKTFCTRLKSSSWILAGLVVLADWLGSS 221 Query: 235 TTTNTFLFNEDAPSDINALRTYFQD-RQQDASRVLELSGLVSNKR-CYEGVHALLDNGYQ 292 ++F + E +L Y+Q+ A +E + L+ + Y + L + Sbjct: 222 RLPDSFCYQEI------SLDDYWQNNALAFAEMAVEQAQLIPSPVAPYLNIQNLFNFITT 275 Query: 293 PRQLQVLVD--ALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATA 350 P LQ + L L ++E TG+GKTE AL A +L+ AD + ALPT AT+ Sbjct: 276 PTPLQQWAENVELASGNQLFILEDVTGAGKTEAALILAHRLMANGFADGLYVALPTMATS 335 Query: 351 NAMLTRMEASASHLFSS---PNLILAHGNSRFNHLFQSIKSRAIT------EQGQEEAWV 401 NAM R+ L+ P+L+LAHG + F+ S + +E Sbjct: 336 NAMYERLGKVYRRLYEDDHAPSLVLAHGARHLSEAFRESLSMPEAGESRKYDHDEETIEA 395 Query: 402 QCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYM 461 C WL+ S KK L ++GV T+DQ L++VLP +H+ +R LG+ R +LI+DEVHAYD YM Sbjct: 396 VCSAWLADSRKKALLAEVGVGTLDQALLAVLPARHQSLRCLGLARKILIIDEVHAYDPYM 455 Query: 462 NGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTY----GLHTDPVENNSAYPLINWR 517 N LL+++L+ A GGSVI+LSATLP + + L + G ++ YPL+ Sbjct: 456 NKLLQSLLEYHAAQGGSVIMLSATLPFSMRVEYLCAFCKGAGTEVSVLKKTEQYPLVTH- 514 Query: 518 GVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLV 577 F ++H E + +A + LE + A G VC + N V Sbjct: 515 -------FSSISHLETGLSTRQEVERTVTVALLDTVDNALEHIRQAVEQGQCVCWVRNTV 567 Query: 578 DVAQVCYQRL-KELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKR--NVGRILVA 634 A Y+ L ++ + + LFH+RF + DR+ E +S FGK GR+L+A Sbjct: 568 GDAIKTYRLLARQKWLDKERLSLFHSRFAMIDRQRIELETLSLFGKESTAEMRRGRVLIA 627 Query: 635 TQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRP---------AGFEIPVATI 685 TQVVEQSLD+DFD +I+ P DLL QR+GR HRH R E PV I Sbjct: 628 TQVVEQSLDLDFDMMISDLAPIDLLIQRVGREHRHIRDADGTRLEHEGAVDKRETPVFYI 687 Query: 686 LLPDGEG----------YGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIY 735 P + +Y NV +W TQ+ + + L P R ++ +Y Sbjct: 688 FGPSASETPAENWLKAVLPGTQKVYQNVGQLWLTQKLLAK--AGKLSMPGDARSLIEGVY 745 Query: 736 DDA-EMDEPEWVGNGMDKFESAECEKRFKAR-KVLQWAEEYSLQDN------DETILAVT 787 D + P+ + DK E+ K AR L+ A+ YS +E T Sbjct: 746 SDEAQATIPDSLQTLSDKAEAEAYAKLGIARMNALKLAKGYSRDSAEDSGGWEEETKIPT 805 Query: 788 RDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVP-FTWKRSFSEVVD 846 R G+ ++ + L DG+++ + + + A ++ ++VP +W R+ + Sbjct: 806 RLGDDTVRVALV--------LPDGEMWRPYADSKNF-AWDMSMLSVPKNSWLRAKEVIPT 856 Query: 847 EDGLLWLEGKQNLDGWVWQGN-----SIVITYTGDEG 878 + + K+ + W + Y G Sbjct: 857 DVRSSLEKFKEEVKAVKWIELFPLTTELSSWYDKLMG 893 >UniRef50_C6SPI7 Predicted helicases n=1 Tax=Streptococcus mutans NN2025 RepID=C6SPI7_STRMN Length = 936 Score = 519 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 212/932 (22%), Positives = 357/932 (38%), Gaps = 95/932 (10%) Query: 8 CHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEML-----SKQR 62 ++W K + L+ H D VA W+ + L ++ Sbjct: 16 YNFWAK-KREEKGQFLWLPLMQHLEDTKNVAGLLWEHWLGEGQKALIIASLKTGKKDEKT 74 Query: 63 VKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWF 122 K F A+HDIGK FQ K + K G + + Sbjct: 75 AKQLAQFLAAVHDIGKATPVFQSKKGYANSKDLDLELLEKLERAGFE-----GISSITLA 129 Query: 123 NQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLAS 182 N + G + ++ V GHHG + + K++ ++ Sbjct: 130 NPEKSPHALAGQYILHYNKVKED------IATIVGGHHGKPVDDRATYKNQRSQESNYYQ 183 Query: 183 YAA-------QDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWT 235 + ++A+EE ++ + + + I +L+G +ADW+ S Sbjct: 184 SGKSGNTIYQKWERAQEEILNWALEVSGFKSVDELPTIKQPAQVILSGLLIMADWIASNE 243 Query: 236 TTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQ 295 + ++ + A DR + S VS ++PR Sbjct: 244 DYFPLISIDEREVENKA------DRLSGFEKWKRSSLWVSRNTWDFEGLYQARFDFEPRD 297 Query: 296 LQVLVDALPVA---PGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANA 352 +Q ++ PG+ ++EAP G GKTE AL +L ++ + + F LPTQAT+N Sbjct: 298 VQAVLSKTIADTEQPGIFILEAPMGIGKTEAALVATEQLAEKTDRNGIFFGLPTQATSNG 357 Query: 353 MLTRMEASASHLFSS----PNLILAHGNSRFNHLFQSI-KSRAITEQGQEEAWVQCCQWL 407 + R+E + ++ L HG + N F + K +I E V +W Sbjct: 358 IFPRIEKWLESIKEDLDDNISIQLVHGKAALNADFSELPKGISINIDDFENGSVIVNEWF 417 Query: 408 SQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEA 467 S K L V T+DQ L+ L KH +R LG + V+++DEVHAYD YMN L Sbjct: 418 S-GRKTAVLDDFVVGTVDQFLMLALKQKHLALRHLGFSKKVVVIDEVHAYDAYMNQYLLE 476 Query: 468 VLKAQADVGGSVILLSATLPMKQKQKLLDTY----GLHTDPVE--------NNSAYPLIN 515 L+ G VI+LSATLP ++++KLL +Y G + E AYPLI Sbjct: 477 ALRWMGAYGVPVIILSATLPAERREKLLKSYMFGMGKRFEEKEKEQLSKQLKTEAYPLIT 536 Query: 516 WRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICN 575 + + F L L + +L+ + + G +I N Sbjct: 537 YNNGFDICQIT----------EFKKGENKKILLSQLEEEDLLDTVKGLLSDGGVAGIIVN 586 Query: 576 LVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVAT 635 V AQ + + + +++FH+ F +R KE ++ GK+ R +I++ T Sbjct: 587 TVKRAQKIAKVFADSLGEDM-VEIFHSGFIATERVRKEQELLKMIGKDANRPYRKIIIGT 645 Query: 636 QVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGR 695 QV+EQSLD+DFD +I+ P DLL QR+GRLHRH I + D + Sbjct: 646 QVIEQSLDIDFDVMISDLAPMDLLIQRMGRLHRHKIDRPQKHVFPKFYVIGMNDDLKFEE 705 Query: 696 HEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDA-EMDEPEWVGNGMDKFE 754 ++ RTQ ++ + S+ P+ + +YD+ E+D P + + Sbjct: 706 GSSFVYGDYLLARTQYYLPD----SINLPEDISILVQKVYDEKLELDYPTELLDKKYHNA 761 Query: 755 SAE----------------------CEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEM 792 +E E R + ++ W E D+DE A RD E Sbjct: 762 KSEHETKIGNKESKARDYKIADPVLRETRSRKENLIGWLENSHPDDSDERAYAQVRDIED 821 Query: 793 SLPLLPYVQTSSGKQLL--DGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGL 850 + ++ + G L + E ++ + +A N + +P +S+ V D Sbjct: 822 IVEVIALKKVGDGYALFGEGEDLSELITDFNIAKKVAQNTLRLPIALTKSY-NVDDTIKE 880 Query: 851 LWLEGKQNLDGWV---WQGNSIVITYTGDEGM 879 L + + NL+ W W ++ I + + Sbjct: 881 LEMYSRMNLNNWQDSSWLKGALGIIFDENNEF 912 >UniRef50_B8GIV7 CRISPR-associated helicase Cas3 n=1 Tax=Methanosphaerula palustris E1-9c RepID=B8GIV7_METPE Length = 912 Score = 514 bits (1324), Expect = e-144, Method: Composition-based stats. Identities = 255/937 (27%), Positives = 389/937 (41%), Gaps = 90/937 (9%) Query: 4 FKYICHYWGKSSKSLTK--GNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQ 61 YWGK+ + G HLL+YHCLDVAAV +Q +L + F + Sbjct: 5 SDNYYSYWGKAQREGEPEKGAGYHLLVYHCLDVAAVGQKLLEQDPLLMHRFTALTGFNDD 64 Query: 62 RVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYW 121 +V + F +ALHD+GKF RFQ + L G H + LY Sbjct: 65 QVLHLIPFLLALHDLGKFSDRFQNLKPDLMELLQ-------GNRGSRRYPIRHDSMALYL 117 Query: 122 FNQDSLSEQSLGDFFSFFDAAPHPYESWF----PWVEAVTGHHGFILHSQDQDKSRWEMP 177 F QD ++F P+ + WF P AV+GHHG E Sbjct: 118 FEQDIRDLAWKKNWFWMDHDLPYAEDEWFEIFAPLFRAVSGHHGEPP-------QHDETV 170 Query: 178 ASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPP-------DCSSLLAGFCSLADW 230 + + + D+ A ++ L L + S LLAG +L+DW Sbjct: 171 SVDSLFLDGDRAAARDFAVQAATLLLGSGSYPPIEYSEGWFEQFSTASWLLAGLVTLSDW 230 Query: 231 LGSWTTTNTFLFNEDAPSDINALRTYFQDRQQD-ASRVLELSGLVSNKRCYE------GV 283 LGS T F ++ L Y+++ Q A + +G++ Sbjct: 231 LGSNRTFFPF------QTEAMDLAVYWKNFAQKGAEDAVRDAGVLPATVSSNCGMAGLFP 284 Query: 284 HALLDNGYQPRQLQVLVDA--LPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVI 341 L P +Q + + L P LT+IE TG GKTE AL A +L++ + + Sbjct: 285 PDLPPKITSPSPIQTYLSSCSLTPEPRLTIIEETTGGGKTEAALVLAHRLMNYGCGEGIF 344 Query: 342 FALPTQATANAMLTRMEASASHLFSSP---NLILAHGNSRFNHLFQSIK------SRAIT 392 LPT ATA+++ R+ + +++ +++LA + LF+ S Sbjct: 345 MGLPTMATADSLYGRIAQTYQRMYTGDQRASVVLATSARDLSDLFKKSVLPPGQWSHEQY 404 Query: 393 EQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVD 452 + G+E A C WL+Q+ KK L Q+GV TIDQ L++VLP +H+ +R LG+ R++LIVD Sbjct: 405 KPGEETASATCTIWLAQNRKKALLAQVGVGTIDQALMAVLPFRHQSLRLLGLARNILIVD 464 Query: 453 EVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTY---GLHTDPVENNS 509 EVHAYD YM+ +L +LK QA GGS ILLSATL M Q+Q L + + Sbjct: 465 EVHAYDPYMHTVLCGLLKFQAAFGGSAILLSATLTMAQRQDLTSAFCAGLGRRAKTLTDE 524 Query: 510 AYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQ 569 YPLI + + ++ + + + +LE+++ AA G Sbjct: 525 TYPLITMATAQDVTETPIDSSAARV--------RTVRVQMVDDSADVLEQIVRAAGDGRC 576 Query: 570 VCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRN-- 627 VC + N +D A + L ++ + LFHARF L DR + E +V+ FGK Sbjct: 577 VCWVRNTIDDAINAFNELNTRLESR-QVLLFHARFALGDRLDIEKKVLDTFGKESLDPIR 635 Query: 628 VGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATIL- 686 G +LVATQVVEQSLD+DFD +IT P DL+ QR GRLHRH R R + +A L Sbjct: 636 RGMVLVATQVVEQSLDLDFDLMITDLAPMDLIIQRAGRLHRHPRGDRGEAVMVVLAPPLT 695 Query: 687 -LPDGEGY----GRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDD--AE 739 PD + Y + ++Y N +W T Q ++ + PD R ++ ++ D Sbjct: 696 RTPDPDWYKRVFPKGGYVYPNHGQLWLTAQLLD--TKGKIVMPDGARDLIEGVFGDGAQI 753 Query: 740 MDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDND--ETILAVTRDGEMSLPLL 797 + + + L+ ++ Y E TR G+++ L+ Sbjct: 754 RIPLSLLPREVLVDGKKRGDISIARLNTLEVSDGYRRTPTQWVEEAHVSTRLGQLTSTLV 813 Query: 798 PYVQTSSGKQLL--DGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDED----GLL 851 + Q DLS E + + + D+ L Sbjct: 814 LARWDGTTLTPWYSSNQNAWDLSQVHIAEKKVASAAVFEGELGAAVKRLEDQIPGLGKWL 873 Query: 852 WLEGKQNLDGWVWQG-------NSIVITYTGDEGMTR 881 L W+G ++ + Y G Sbjct: 874 ILVPLSCTSAGTWEGPARNDADENVTVIYDPVLGFMM 910 >UniRef50_D2TKK3 CRISPR-associated protein n=1 Tax=Citrobacter rodentium ICC168 RepID=D2TKK3_CITRO Length = 906 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 244/912 (26%), Positives = 387/912 (42%), Gaps = 94/912 (10%) Query: 4 FKYICHYWGKSSKSLTKGND-IHLLIYHCLDVAAVADCWWDQS-VVLQNTFCRNEMLSKQ 61 F I ++WGK+ + G D HLL +H LDVAAV + L + F R M + Sbjct: 24 FVSIFNFWGKTRQGEKDGGDDYHLLCWHSLDVAAVGYWMVKNNIYGLADHFRRLGMTDIE 83 Query: 62 RVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYW 121 + + + + HD GKF FQ + ++ Q K +H G + Sbjct: 84 QAAQFFAWLLCWHDTGKFASSFQQLYSHP-------DLNVPAGRRQNYEKISHTTLGYWL 136 Query: 122 FNQDSLSEQSLGDFFSFFDAAPHPYESWFP-WVEAVTGHHGFILHSQDQDKSRWEMPASL 180 +N + F P + W+ TGHHG L Sbjct: 137 WNTWL---SDCPELFPHSTLTPRKLKRVIAMWMPLTTGHHGRPPDGV----------QEL 183 Query: 181 ASYAAQDKQAREEWISVLEALFLTPAGLSIND------IPPDCSSLLAGFCSLADWLGSW 234 ++ QDK+A E+++ +ALF S D + S L++ LADW GS Sbjct: 184 DNFLPQDKEAAREFLASAKALFPQIVIPSCWDEDDGIALFQQLSWLISAAVVLADWSGSS 243 Query: 235 TTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPR 294 T + + TY+Q + A L + S + GV+ L QP Sbjct: 244 TRFFPR------IASKMPVETYWQQALEKAKAALAIFPPSSGVAPFSGVNTLFPFIRQPT 297 Query: 295 QLQVL---VDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATAN 351 LQ +D L ++E TG+GKTE AL +L+ A + F LPT ATAN Sbjct: 298 PLQQKVLTLDIHDAGAQLFILEDVTGAGKTEAALILTHRLMAAGKAKGLFFGLPTMATAN 357 Query: 352 AMLTRMEASASHLF---SSPNLILAHGNSRFNHLF-QSIKSRAITEQGQEEAWVQCCQWL 407 AM R+ S L+ S P+L+LAH F QSI S + G+ + C W Sbjct: 358 AMFDRLAQSWQALYQPGSRPSLVLAHSARGLMDRFNQSIWSADLIGAGEPDERQGCAAWF 417 Query: 408 SQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEA 467 + SNKK L ++GV T+DQ +++V+P KH +R LG+ +L+ DE+HAYD YM+ +LE+ Sbjct: 418 ADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHAYDAYMSRILES 477 Query: 468 VLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHT-----DPVENNSAYPLINWRGVNGA 522 +++ QA G + ILLSATL +Q+ +L+ + P+ + YP + G Sbjct: 478 LIENQARNGNTTILLSATLSQQQRDRLVAAFARGRGSHIEAPLLGHGDYPWLTQVTGTGV 537 Query: 523 QRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQV 582 + E + + + + + +ER+ AA+ G + I N VD A Sbjct: 538 VSRHVATRKEV--------ERCVKVGWLYSEQSCIERIEQAASEGQCIAWIRNSVDDAIR 589 Query: 583 CYQRLKELN-NTQVDIDLFHARFTLNDRREKENRVISNFGK-NGKRNVGRILVATQVVEQ 640 Y++L +I LFH+RF DR+ E +S FGK + G++L+ TQV+E Sbjct: 590 VYRQLIARGVIAAENISLFHSRFAFYDRQRIETETLSRFGKSESTQRAGKVLICTQVIES 649 Query: 641 SLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRP-------AGFEIPVATILLPDGEGY 693 S+D+D D +I+ P DLL QR GRL RH R + P +L P+ + Sbjct: 650 SVDIDMDAMISDLAPVDLLIQRAGRLQRHIRDRNGQLKNSGQDERDAPELLVLAPEWDEA 709 Query: 694 G----------RHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEP 743 ++Y + +W TQ+ + E ++ P + R ++S+Y ++ + Sbjct: 710 PQEDWFSCAMRNSAYVYPDHGRLWLTQRVLREQ--GAIRMPQSARLLIESVYGESVVMPV 767 Query: 744 EWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAV-TRDGEMSLPLLPYVQT 802 + + C++ F + +L +A YS +++ + TR E S+ L Sbjct: 768 GFAETEQKQEGKYYCDRAFATQMLLNFAAGYSSENSHYLSETLSTRLAEESVTLWLAKI- 826 Query: 803 SSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGW 862 +DG V E +E ++ V V +W G L + L W Sbjct: 827 ------VDGVVMPYALSEHPWE---MSVVRVRQSWWG------KHKGEFELLEGEALQNW 871 Query: 863 VWQG-NSIVITY 873 + TY Sbjct: 872 CAEHYQDKDFTY 883 >UniRef50_Q314I0 CRISPR-associated helicase Cas3, core n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q314I0_DESDG Length = 892 Score = 511 bits (1315), Expect = e-143, Method: Composition-based stats. Identities = 279/932 (29%), Positives = 402/932 (43%), Gaps = 108/932 (11%) Query: 5 KYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVK 64 YW K +++ +HLL YH LDVAAV D + + VLQ CR LS ++ Sbjct: 8 DSYYGYWAKFDRNIAP--YVHLLPYHLLDVAAVYDSLLNHTPVLQRRICRLSQLSPDTIR 65 Query: 65 AWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQ 124 A L LHD+GKF FQ + E+ L + P T + +H A G + ++ Sbjct: 66 ALLRTLAVLHDLGKFSQIFQEQQPEARAILT------DTPPTGLGGNTHHTALGQWLYS- 118 Query: 125 DSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYA 184 S+ Q+L D + F + ++ P V A GHHG + S+ + Sbjct: 119 -SVVRQALEDCHAVF--SEDAMDTMRPLVNATFGHHGTP----------EQESGSIRHFR 165 Query: 185 AQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNE 244 + A+ L S L AG +ADWLGS T + Sbjct: 166 RATEHAKAFATEAANFLLPPIEIPESEQAFRALSWLHAGLMVVADWLGSNTRWFPY---- 221 Query: 245 DAPSDINALRTYF-QDRQQDASRVLELSGLVS----NKRCYEGVHALLDNGYQPRQLQVL 299 ++ L TY+ + A R + SG+ + KR + + L P LQ Sbjct: 222 --HAEQMPLETYWNEIALPRADRAVRESGIPAAPPHPKRDFTRLLPHLPANAGPSPLQSH 279 Query: 300 V---DALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTR 356 P L + E TG GKTE AL A L+ AD ALPT ATAN M R Sbjct: 280 ALYDAIRSSGPQLHIFEDMTGGGKTEAALLCAHGLMTMSEADGFYIALPTMATANGMYAR 339 Query: 357 MEASASHLFSSP---------NLILAHGNSRFNHLFQSIKSRAITE---QGQEEAWVQCC 404 + S LF S +LILAHG + LF S A E Q + C Sbjct: 340 LAQSYRALFGSDKDSAQDSPISLILAHGARNLSDLFMSGVPDANAESAIDPQSDGRAYCA 399 Query: 405 QWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGL 464 WL+ S KK L GV TIDQ L++VLP +H+ +R LG+ R+VL++DEVHAYD Y L Sbjct: 400 TWLADSRKKALLSPCGVGTIDQALLAVLPARHQCLRLLGLARNVLVIDEVHAYDEYTGSL 459 Query: 465 LEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQR 524 L+A+L+ A +GGS ILLSATL + +Q L + + YP + Sbjct: 460 LQALLRFHAALGGSAILLSATLTRRIRQNLAAAF-------CEGAGYPAPTLNVDDFPLA 512 Query: 525 FDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCY 584 +H + + + I + + M + ++ AG C I N VD A+ Y Sbjct: 513 TTADSHGMRETAFPATRRSTIHVKLTADENAMYKALLETRAAGGCACWIRNTVDQAREAY 572 Query: 585 QRLKELNN-TQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGR--ILVATQVVEQS 641 +RL+E + + DI LFHARF + DR+ E RV++ FGKN ++ R ILVATQVVEQS Sbjct: 573 ERLREQHGVPEKDIILFHARFAMADRQHIEQRVLALFGKNSTQDDRRSKILVATQVVEQS 632 Query: 642 LDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEG--------- 692 LD+DFD L + H P +LL QR GR HRH+R RP G E P +L P Sbjct: 633 LDLDFDQLNSDHAPMELLIQRGGRCHRHNRN-RPRGLESPRMLVLAPQARNDAPQDWYAS 691 Query: 693 -YGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMD 751 G+ + +Y +WR + +E++ L PD R+ ++S+YDD E Sbjct: 692 VLGKAQFVYPVQAPLWRAAKLLEKVK--QLTLPDDARRLVESVYDDNEFAPESLQNADER 749 Query: 752 KFESAECEKRFKARKVLQWAEEYSLQ------DNDETILAVTRDGEMSLPLLPYVQTS-- 803 A +K L+ YS+Q ++DE + VTR GE ++ L Sbjct: 750 YLAEALGKKDLARFNTLKLEAGYSVQALGRGWEDDECV--VTRLGEETVQLRLLRWDGGQ 807 Query: 804 ----------------SGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDE 847 S ++ G+V LA +P K + V+ Sbjct: 808 LNLWADGPGMAAACQRSEVRVKKGKVTPSALPPDVVAQLAALMKRMPDKGKWAVPLVL-- 865 Query: 848 DGLLWLEGKQNLDGWVWQGNSIVITYTGDEGM 879 ++ + W+ ++YT +G+ Sbjct: 866 --------RKAGETWIG-WAEQKVSYTSSQGL 888 >UniRef50_C2BEU2 CRISPR-associated helicase n=1 Tax=Anaerococcus lactolyticus ATCC 51172 RepID=C2BEU2_9FIRM Length = 920 Score = 510 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 201/943 (21%), Positives = 354/943 (37%), Gaps = 109/943 (11%) Query: 1 MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVV--LQNTFCRNEML 58 ME + W K ++ L H D V ++ + +++ + + Sbjct: 1 MEVMEKF--LWAKKNRV-KNIPMWLPLQVHLADTREVCGYLYNHWLSQGVRDLLMDSVVT 57 Query: 59 S----KQRVKAWLLFFIALHDIGKFDIRFQYKSAESW----------LKLNPATPSLNGP 104 + + F A HD+GK FQ K + + +N ++ Sbjct: 58 DVEDKDELLLNLCRFLGATHDLGKATPIFQVKKSFNGDFELDNLVLEKLVNAGFKDIDKF 117 Query: 105 STQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFIL 164 S H +G Y + ++ F + HHG + Sbjct: 118 SLTKRENIRHNISGQYLLTKFGVN---------------------FCVANIIGAHHGRPI 156 Query: 165 HSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALF-------LTPAGLSINDIPPDC 217 ++ D +SL + W ++ +++F + I Sbjct: 157 SEKEADI-CNSFASSLCQEDKTSSERALFWQNLQKSIFDKALIGCGFSGAEDLPLISQPG 215 Query: 218 SSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNK 277 +LAG +ADW+ S + ++ + + F+ D + + Sbjct: 216 QVILAGLLIMADWITSNENYFPLIAIDEVEVSPDRVEIGFKKWLDDRADA-----WTPHY 270 Query: 278 RCYEGVHALLDNGYQPRQLQVLVDALP---VAPGLTVIEAPTGSGKTETALAYAWKLIDQ 334 + +P+ Q + PG+ +IEAP G GKTETAL L + Sbjct: 271 YFDGIYNERFPFIEKPKDTQKKISKAISNTDEPGIFIIEAPMGIGKTETALIAVEDLAKK 330 Query: 335 QIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQ 394 + F LPTQAT+N + TR+ H+ +L L HG ++ N F + Sbjct: 331 TNRTGMFFGLPTQATSNGIFTRVREWLDHIEGEKSLRLIHGKAQLNDEFSKLPKSRNIHG 390 Query: 395 GQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEV 454 G E V +W + K L V T+DQ+L+ L KH +R LG+ V+++DEV Sbjct: 391 GDE---VGVNEWFA-GRKVSILDDFTVGTVDQILLVALKQKHLMLRHLGLANKVVVIDEV 446 Query: 455 HAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDP---------- 504 HAYD YM+ L L+ V++LSATLP+ ++ LL+ Y + + Sbjct: 447 HAYDAYMSVFLYRALRWLGAYKVPVVILSATLPISKRNALLEAYMIGAELGYDRLPKPEG 506 Query: 505 VENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAA 564 E N AYPL+ + ++F + + I + ++ + Sbjct: 507 FEINEAYPLLTYNDGASIKQF--ADFKKDAGRSYKIIKKSKG-----ESEDLVSLIKENT 559 Query: 565 NAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNG 624 G V ++ N V AQ ++ E+ ++L H+ F DR +KE +I GKNG Sbjct: 560 AQGGVVGVMVNTVRKAQNFARKCIEVFGED-RVELLHSSFISTDRYKKEKNLIETIGKNG 618 Query: 625 KRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVAT 684 R +I++ TQV+EQSLD+DFD LIT P DL+ QR+GRLHRH RP + P+ Sbjct: 619 NRPDFKIVIGTQVIEQSLDIDFDILITDLAPMDLILQRMGRLHRHKETKRPENLKNPMVY 678 Query: 685 ILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPE 744 +L G + + + +++RT+ ++ E + P+ + +Y D ++D Sbjct: 679 VLNCGGYDFDKGSSFVYSEYILFRTEYYLPER----INLPNDISHLVQLVYGDGDLDLDG 734 Query: 745 WVGNGMDKFESAE-------------------CEKRFKARKVLQWAEEYSL--QDNDETI 783 + +K+ +K + + W + + + +D Sbjct: 735 DLQKLYEKYRDNRDEQIDDKEFRANVYRLDKPLKKIGDKKNLSAWLKNSNKMAESSDVKA 794 Query: 784 LAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWK----- 838 A RD ++ ++ G + D D + +A + +P Sbjct: 795 NAQVRDSSDTIEVIALKACQGGYEFFDKVGTLDPYDNKTAMEIAKRTIKLPNAVYFDKEN 854 Query: 839 -RSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMT 880 +V++E +LE D W NS+ I + + Sbjct: 855 GYIIDKVIEELEKYYLENLSAWDDQAWLKNSLAIIFDSNNEFR 897 >UniRef50_C1XFZ7 CRISPR-associated helicase Cas3 n=3 Tax=Meiothermus RepID=C1XFZ7_MEIRU Length = 899 Score = 507 bits (1305), Expect = e-142, Method: Composition-based stats. Identities = 240/911 (26%), Positives = 365/911 (40%), Gaps = 89/911 (9%) Query: 1 MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVV-LQNTFCRNEMLS 59 M + W KS + +G H LI H LDVAA A+ ++ + + L Sbjct: 1 MSLSETARALWAKSDRGREQGA-WHPLIAHLLDVAACAEAILEREPPKTLELYAHDLSLE 59 Query: 60 KQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGL 119 Q+ KAW+ LHDIGK FQ K E +L + + T +H Sbjct: 60 PQQAKAWVCALAGLHDIGKASPAFQQKWPEGKERLWATGLTWSSDPTPPPHDLSHSIISE 119 Query: 120 YWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPAS 179 + +A Y + AV HHGF D DK+ + Sbjct: 120 VVLPE-------------LLEARGWKYRAAQNVAAAVGEHHGFRATRGDLDKA-----TT 161 Query: 180 LASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNT 239 A + R E + + + LAG S ADW+GS + Sbjct: 162 REKGNANWDEVRRELFEAVLEVLGVGEAPKVKLYGGAAFERLAGLTSFADWIGSSLDFHP 221 Query: 240 FLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLD---------NG 290 + L Y+++ + A++ L+ G K +L + Sbjct: 222 L---------GDDLAGYYREAKARAAQKLDGIGWFQRKTLMPEPQSLEEVFAYLGSPEAP 272 Query: 291 YQPRQLQVLVDALPVA---PGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQ 347 ++ R LQ ++ L P L ++EAP G GKTE A +L + ALPTQ Sbjct: 273 FRARPLQAAIERLLEGVDCPALLLVEAPMGEGKTEAAFYAHLRLQAANGHRGMYVALPTQ 332 Query: 348 ATANAMLTRMEASASHLFS--SPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQ 405 AT N M R +A +L L HG S +Q I+ R + + +EE V+ Sbjct: 333 ATGNLMFERAKAFLDRWGQSRKLDLQLLHGASELVEAYQEIRVRPNSPEEREEG-VEAQV 391 Query: 406 WLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLL 465 W S K+ L + V T+DQ L+ +LP KH+F+R G+G V+++DEVHAYDTY +GL+ Sbjct: 392 WFS-HRKRGLLSEYAVGTVDQALLGILPTKHQFVRLWGLGNRVVVLDEVHAYDTYTSGLI 450 Query: 466 EAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRF 525 E +++ + SV+L+SATLP +++ LL +G + + + YP I + Sbjct: 451 EMLVRWLRALDSSVVLMSATLPRAKRENLLRAFG--AEKITEDKPYPRITRVVKDN---- 504 Query: 526 DLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQ 585 P Q A L + E+ + A G V I N V AQ Y+ Sbjct: 505 ---PMPVVETFEACKQLTLQLRALPLDLEAIAEQALEQARRGGCVACIVNTVQRAQELYR 561 Query: 586 RLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVD 645 L N+ V++ LFHAR+ L +R +E V++ FGK G+R ILVATQVVEQSLD+D Sbjct: 562 ALAG-NSDGVEVYLFHARYPLEERLNREQLVLAKFGKQGQRPKRAILVATQVVEQSLDLD 620 Query: 646 FDWLITQHCPADLLFQRLGRLHRHHRKYRPA-GFEIPVATILLPDGEG---YGRHEHIYS 701 FD + T P DL+ QR GRLHRH R PV + + EG +G E IY Sbjct: 621 FDVMFTDLAPVDLVLQRAGRLHRHARSAEERHSHTEPVLWVAGLECEGVPDFGTAERIYE 680 Query: 702 NVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKR 761 ++ + + N + P + + +Y D E +++ ++ ++ Sbjct: 681 RYVLL---RSWLALRNRTRIGLPGDIDRLVQEVYSDMPQGPSEAWKRALEEAQARMEKRD 737 Query: 762 FKARKVLQWAEEYSLQDNDET----------------------ILAVTRDGEMSLPLLPY 799 + + +A D DET L TR G S ++ Sbjct: 738 ARDQDEAFYAP---FGDPDETGWLEPRDFTRLPDDEPNPDDDPSLLKTRKGPPSATVVLL 794 Query: 800 VQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNL 859 + G+ LD E +S Q E R+ + V + L K + Sbjct: 795 HRVG-GQLCLDAGGKEGVSLASQLELAQARRIFARSVKLSRYELVQNNLEALEAHRKAHD 853 Query: 860 -DGWVWQGNSI 869 W + Sbjct: 854 LPTKPWSETPL 864 >UniRef50_Q12YB2 CRISPR-associated helicase Cas3 n=2 Tax=cellular organisms RepID=Q12YB2_METBU Length = 921 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 252/949 (26%), Positives = 401/949 (42%), Gaps = 105/949 (11%) Query: 7 ICHYWGKSSKSLTKGND-IHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKA 65 + WGKS + N HLL+YH LDVAA + +L F L +++ + Sbjct: 1 MYRNWGKSKSATEYDNSNYHLLVYHGLDVAATGRTILQKDKLLLQKFTDIISLDEEKTIS 60 Query: 66 WLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWF--- 122 + F +A+HDIGKF RFQ E L + H + GL+ + Sbjct: 61 LISFCLAVHDIGKFSERFQNLQPELLNDLRD-------HDSDKSYTVRHDSMGLHLWKEI 113 Query: 123 NQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLAS 182 + E LG +D + PW+ +VTGHHG +S Sbjct: 114 WSTAFDENWLGLDKEIYDKFDWN-DLIGPWMNSVTGHHGKPPEYV----HNGITISSSDL 168 Query: 183 YAAQDKQAREEWISVLEALFLTPAGLSINDI-----------------PPDCSSLLAGFC 225 + +D + ++ +L L+ A + S L+AG Sbjct: 169 FTDEDIEMASSFVKEAASLLLSDALSDAFEFTSCSEEQAYDIDDMILAFKRTSWLIAGLA 228 Query: 226 SLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGL-VSNKRCYEGVH 284 ++DW+GS ++ +E L Y +A + LE +G+ S G+ Sbjct: 229 IVSDWIGSSEEHFEYISSEIPL--KEYLDKY---ALPNAEKALEDAGIYPSTPSTITGMD 283 Query: 285 ALLDNGYQPRQLQVLVD--ALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIF 342 L + P +Q V + P L ++E TGSGKTE AL A +L+ + +A Sbjct: 284 ELFPDIVVPSPMQEHVSNCDVAAGPQLFILEDATGSGKTEAALCLAHRLMAKGLAQGAFV 343 Query: 343 ALPTQATANAMLTRMEASASHLF---SSPNLILAHGNSRFNHLFQSI--------KSRAI 391 LPT AT+NAM R+ S ++ P+L+LAHG + + F+S Sbjct: 344 GLPTMATSNAMYERLGNSYQRMYAKGERPSLVLAHGQNYLSDAFRSSIGFQNSKNGYYGD 403 Query: 392 TEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIV 451 G E QC W++ + KK L +GV TIDQ L+++L H+ +R LG+ R+VLIV Sbjct: 404 GSSGDETIQAQCSAWIADNRKKALLADVGVGTIDQALMAILQSNHQSLRLLGLSRNVLIV 463 Query: 452 DEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTD---PVENN 508 DEVHAYD YM+ LL ++L+ +GGS ILLSATLP K +Q L+ + D +N Sbjct: 464 DEVHAYDPYMHTLLCSLLEFHVSLGGSAILLSATLPQKHRQGLISHFCKGLDSPTMSASN 523 Query: 509 SAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGA 568 Y L+ N + P + + + + ++ +++I + G Sbjct: 524 EEYALVTHVSENEISETPIGTRPG--------TERTVNVEFLHDEPSVEDKLIKCSKEGK 575 Query: 569 QVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRN- 627 C I N VD A Y+++ ++ LFHARF + DR + EN V+ FGK RN Sbjct: 576 CCCWIRNTVDDAIEAYEKIVSELG-NDNVLLFHARFAMGDRLKIENDVLETFGKRSDRNC 634 Query: 628 -VGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRP-----AGFEIP 681 G++L+ATQVVEQSLD+DFD++++ P DLLFQR GRL RH R + P Sbjct: 635 RKGKVLIATQVVEQSLDIDFDYMVSDLAPMDLLFQRAGRLQRHPRDKKGSISENDERGRP 694 Query: 682 VATILLPDGEG----------YGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWL 731 + IL P+ + ++Y + +W T + E S+ P R ++ Sbjct: 695 LLGILAPELSKDVTENWYSDMFKGGAYVYPSHGKLWLTANLLFEHGRFSI--PKDSRSFI 752 Query: 732 DSIYDDAEMD--EPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDND--ETILAVT 787 + ++ + + A ++ + L + Y + + + T Sbjct: 753 EYVFGENANETVPAPLRARDEKAQGEAMADRSMANWRSLNLLQGYERSGSQWVDDTITPT 812 Query: 788 RDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNV----PFTWKRSFSE 843 R GE S+ + G++L+ + +DLS E +++ RV + E Sbjct: 813 RLGE-SVNVRLAQ--FEGQKLVPLRGPDDLSWELSQLSISGGRVKFVDDHGEELNKCIEE 869 Query: 844 V----VDEDGLLWLEGKQNLDGWVWQGNS-------IVITYTGDEGMTR 881 D+ L + DG W GN+ + + Y G+ Sbjct: 870 AQVSMRDKGKWSVLIPMGSDDGVNWTGNAKNKHNDRVDLAYDARIGLRM 918 >UniRef50_B1LQ84 CRISPR-associated helicase Cas3 n=55 Tax=Enterobacteriaceae RepID=B1LQ84_ECOSM Length = 899 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 231/926 (24%), Positives = 379/926 (40%), Gaps = 97/926 (10%) Query: 6 YICHYWGKSSKSLTKGND-IHLLIYHCLDVAAVADCWWDQS-VVLQNTFCRNEMLSKQRV 63 +WGK+ + G D HLL +H LDVAA+ + L + F + ++ Sbjct: 16 TFFDFWGKTRRGEKDGGDDYHLLCWHSLDVAAMGYLMVKSNCFGLADYFRQLGFADTEQA 75 Query: 64 KAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFN 123 + + + HDIGKF FQ L L+P G + + K +H G YW Sbjct: 76 AQFFAWLLCWHDIGKFARSFQQ------LYLHPQLKVPEG-ARKNYEKISHSTLG-YWLW 127 Query: 124 QDSLSEQSLGDFFSFFDAAPHPYES-WFPWVEAVTGHHGFILHSQDQDKSRWEMPASLAS 182 LSE + +P + W+ TGHHG D L + Sbjct: 128 NHYLSE--CQELLPSSSLSPRKLKRVMEMWMPMTTGHHGRPPERMD----------ELDN 175 Query: 183 YAAQDKQAREEWISVLEALF------LTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTT 236 + +DK A +++ ++ LF ++ S ++ LADW GS T Sbjct: 176 FLPEDKGAARDFLLAIKVLFPLIEIPTFWDDDEGVELIKQLSWYISATVVLADWTGSSTR 235 Query: 237 TNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQL 296 + + + Y+Q A L + + + G++ L P L Sbjct: 236 YFPRV------AQTMDIEDYWQKTLVQAQNALTVFPPKAESAPFTGINTLFPFIENPTPL 289 Query: 297 QVLVDALP---VAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAM 353 Q V L P L ++E TG+GKTE AL A +L+ A + F LPT ATANAM Sbjct: 290 QQKVLDLDISQPGPQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLFFGLPTMATANAM 349 Query: 354 LTRMEASASHLFS---SPNLILAHGNSRFNHLFQSIKSRAI----TEQGQEEAWVQCCQW 406 R+ + +S P+L+LAH F E ++ C W Sbjct: 350 YDRLVKTWLAFYSPESRPSLVLAHSARTLMDRFNESLWSGDLVGSEEPDEQTFSQGCAAW 409 Query: 407 LSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLE 466 + SNKK L +IGV T+DQ +++V+P KH +R LG+ +L+ DE+HA D YM+ +LE Sbjct: 410 FADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILE 469 Query: 467 AVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTD-----PVENNSAYPLINWRGVNG 521 +++ QA G SVILLSATL +Q+ KL+ + + P YP + + Sbjct: 470 GLIERQARGGNSVILLSATLSQQQRDKLVAAFARGIEGQQEAPFLEKDDYPWLTHVTKSD 529 Query: 522 AQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQ 581 + + + + + + + R+ +A + G + I N VD A Sbjct: 530 VHSHRVATRKD--------VERSVSVGWLHSEQECIARIASAVSQGKCIAWIRNSVDDAI 581 Query: 582 VCYQRLKELN-NTQVDIDLFHARFTLNDRREKENRVISNFGKNG-KRNVGRILVATQVVE 639 +++L + LFH+RF +DR+ E ++ FGK + G++L+ TQV+E Sbjct: 582 QVHRQLLARGVIPASSLSLFHSRFAFSDRQRIETETLARFGKEDCSQRAGKVLICTQVLE 641 Query: 640 QSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRP-------AGFEIPVATILLPDGEG 692 QS+D D D +I+ P DLL QR GRL RH R P IL P + Sbjct: 642 QSVDCDLDEMISDLAPVDLLIQRAGRLQRHIRDMNGQLKRDGKDERHPPELLILAPVWDD 701 Query: 693 YGR----------HEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDE 742 +Y + +W TQ+ + E ++ P + R ++S+Y + + Sbjct: 702 SPGDEWFGSAMRNSAFVYPDHGRIWLTQRVLREQ--GAIQMPHSARLLIESVYGEDVVMP 759 Query: 743 PEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAV-TRDGEMSLPLLPYVQ 801 + + ++ C++ + VL + Y+ ND + TR E S+ L Sbjct: 760 EGFARSEQEQVGKYYCDRAMAKKFVLNFRPGYAANINDYLPEKLSTRLAEESVSLWLA-- 817 Query: 802 TSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKR----SFSEVVDEDGLLWLEGKQ 857 +DG V + +E ++ V V +W + FS + + W ++ Sbjct: 818 -----TCIDGVVKPYATGAHAWE---MSVVRVRRSWWKKHRDEFSLLEGDAFRQWCVEQR 869 Query: 858 NLDGW---VWQGNSIVITYTGDEGMT 880 + + + Y+ EG+ Sbjct: 870 HDPEMANVILVTDDESCGYSATEGLI 895 >UniRef50_D2C268 CRISPR-associated helicase Cas3 n=3 Tax=Enterobacteriaceae RepID=D2C268_DICD5 Length = 917 Score = 503 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 241/930 (25%), Positives = 366/930 (39%), Gaps = 83/930 (8%) Query: 3 PFKYICHYWGK--SSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSK 60 HYWGK SS HLL YHCLDVAA + ++ L + Sbjct: 10 LSAPYFHYWGKAQSSSENENDAPYHLLPYHCLDVAACGYWLVKHNRFHVRDHMQSLGLEE 69 Query: 61 QRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLY 120 + WL +F+A HDIGKF FQ L NP P + ++ H + GL+ Sbjct: 70 ESAALWLAWFLAWHDIGKFARSFQR------LYQNPDAPLVR--ASGQASPVRHDSLGLW 121 Query: 121 WFNQ-DSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPAS 179 + + + A + W+ + GHHG ++D S Sbjct: 122 LWRHRLYERWEHDASWLPAVSHADKFHYVMDLWLRLMCGHHGQPP--LEEDNSALAFHPD 179 Query: 180 LASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNT 239 A L A + + S LAG LADW GS Sbjct: 180 DILAAQAYLTDLRTVFPQLTAFPDEFSDRPWRALLQQRSWSLAGCVVLADWAGSSQADFP 239 Query: 240 FLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVL 299 + A +D + + A + + ++G+ AL QP LQ Sbjct: 240 YCSQPMALADY-----WREYALPQAENAVLRLPAACDVAPFQGMQALFPFITQPTPLQQQ 294 Query: 300 VDALP---VAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTR 356 + P L ++E TG+GKTE AL +L+ D + LPT ATANAM R Sbjct: 295 AMTVDISTPGPQLFLLEDVTGAGKTEAALVLTHRLLSAGYGDGLYVGLPTMATANAMCRR 354 Query: 357 MEASASHLFSS---PNLILAHGNSRFNHLFQSIKSRAITE------QGQEEAWVQCCQWL 407 + + LFS P+L+LAHG F+ A + A C QW Sbjct: 355 LSKAYRTLFSEFGLPSLMLAHGARNMVADFRLSLWGAEQTGPVRYGPDEGSASAACNQWF 414 Query: 408 SQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEA 467 + S KK L +GV T+DQ L++V+P +H+ +R LG+ +L++DEVHAYD Y + LLE Sbjct: 415 ADSRKKALLADVGVGTLDQALMAVMPFRHQSLRLLGLSGKILLLDEVHAYDAYTSRLLEN 474 Query: 468 VLKAQADVGGSVILLSATLPMKQKQKLLDTYGLH----TDPVENNSAYPLINWRGVNGAQ 523 +L A GGS I+L+ATL Q+++L+ + + + YP + Sbjct: 475 LLAFHASQGGSAIILTATLSASQRERLVQAFYRGMQQPAGELAEQAGYPWFTYVNAQVLH 534 Query: 524 RFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVC 583 + + E + +A + +ER+ A +G VC I N VD A Sbjct: 535 EWPVETRAE--------VRRTVAVAWLSHRADAIERICQAVASGQCVCWIRNTVDDAIAA 586 Query: 584 YQRLKELNN-TQVDIDLFHARFTLNDRREKENRVISNFGK--NGKRNVGRILVATQVVEQ 640 +Q+L + D+ LFH+RF DR E+R I FGK +G+ G++L+ATQVVEQ Sbjct: 587 WQQLCQSGEIAADDVLLFHSRFAFCDRMAIEDRAIERFGKHSDGETRRGKVLIATQVVEQ 646 Query: 641 SLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRP------------AGFEIPVATILLP 688 SLD+D D +I+ P DLL QR GRL RH R+ PV +L P Sbjct: 647 SLDIDVDVMISDLAPVDLLIQRAGRLQRHIRRADGSCKPPSDDMPARDERAAPVLWVLAP 706 Query: 689 DGEG----------YGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDA 738 + +YS+ V+WRTQ + E +L P+ R +DS+Y+ Sbjct: 707 AWQPDAGRDWLGAELRGTGAVYSHQAVLWRTQAILRER--GALRMPEEARLLIDSVYEQR 764 Query: 739 EMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDND----ETILAVTRDGEMSL 794 ++ A+ L ++ Y + + TR GE S Sbjct: 765 IAAPVALEEGDYQAQGKQLGDRTVAAQSSLTFSLGYCVAAAQCGWHDDAELFTRAGEESQ 824 Query: 795 PLLPYVQTSSGKQLL-----DGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDG 849 + + S L +G+ + S + N W ++++ Sbjct: 825 DVYLAWRAESDDALPQPYAGEGEFSWERSRLSVRKRWWQQHQN---GWPTLQGDLLERFR 881 Query: 850 LLWLEGKQNLDGWVWQGNSIVITYTGDEGM 879 + + + + Y D G+ Sbjct: 882 QQL--HRPGAEVLLLTPGEVAHYYRADTGL 909 >UniRef50_Q1GAI8 CRISPR-associated helicase Cas3 n=3 Tax=Lactobacillus RepID=Q1GAI8_LACDA Length = 921 Score = 502 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 216/964 (22%), Positives = 347/964 (35%), Gaps = 122/964 (12%) Query: 1 MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSK 60 M+ K WGK + L+ H +D V ++ + + Sbjct: 1 MKLSKEALSLWGK-KSNQDGDEHWLPLVAHMVDTMNVGHWLYNSWLSEGQRSMLTTRICD 59 Query: 61 QRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLN----------GPSTQMCR 110 + + F +HD+GK FQ K + + S Sbjct: 60 AEMSKLVSFLCYIHDLGKATPAFQTKESYNHDHQLDEELIHRLVSHSFKKLNDLSLPSRS 119 Query: 111 KFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQ--- 167 K H AG + L+E V GHHG + Sbjct: 120 KSPHARAGEAILERAGLNET---------------------IAAIVGGHHGKPQNGDQEE 158 Query: 168 --DQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFC 225 D S + + K A+ E I L + + + +L G Sbjct: 159 QIDVFTSNYYQADNDEEIQQPWKDAQRELIDYGLELAGYEDISEVPPVNQPEAVILEGLL 218 Query: 226 SLADWLGSWTTTNTFLFNED---APSDINALRTYFQDRQQDASRVLELS-GLVSNKRCYE 281 +ADWL S T N D + + R Q+A ++ + + Sbjct: 219 IMADWLASSTCLNNDPDKPMFNLIGLDQSFDDLDMKARYQNAISTWAINDAWIPEEVANV 278 Query: 282 GVHALLDNGYQPRQLQVLVDALPV---APGLTVIEAPTGSGKTETALAYAWKLIDQQIAD 338 + ++PRQ+Q ++ PGL +IEA G GKTE AL A +L Sbjct: 279 DYYYEQHFSFKPRQIQAAMEEHVKEAVDPGLVIIEAEMGIGKTEIALTAAEQLAYVTGRT 338 Query: 339 SVIFALPTQATANAMLTRMEASASHLFS----SPNLILAHGNSRFNHLFQSI-KSRAITE 393 V LPTQAT NAM R+ + + + +P++ L HG + +N + + ++ I Sbjct: 339 GVYIGLPTQATTNAMFDRVNSWLTKIAGIEGINPDIKLLHGKAEWNSRYTDLPRAEDIEA 398 Query: 394 QGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDE 453 + + V W S KK L V TID +L+ L KH F+R LG V+I+DE Sbjct: 399 EELDAGTVTVNSWFS--GKKSILADFAVGTIDNLLLMGLKQKHLFLRHLGFSNKVVIIDE 456 Query: 454 VHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLH-----------T 502 VHAYD YM L LK V++LSATLP +++ +L+ +Y Sbjct: 457 VHAYDMYMQSYLSKALKWLGAYHVPVVILSATLPKEKRNELIKSYIKGKYRRVKKVLQAQ 516 Query: 503 DPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIA 562 + E+N AYPL++ +++ + +L ++ Sbjct: 517 EGWESNRAYPLLSLLDGKELRQYSDFGPKAEPREMQVNYINDEPT-------EVLAKVND 569 Query: 563 AANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGK 622 G +I N V AQ L + H+ F DR E + S GK Sbjct: 570 KIKDGGIAGIIVNTVKRAQEFA----GLVGQDCQCLVLHSAFLATDRSRLEKELQSLIGK 625 Query: 623 NGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPV 682 GKR I++ TQV+EQSLD+DFD + T P DLL QR GRLHRH + RP G E Sbjct: 626 KGKRPDKLIVIGTQVLEQSLDIDFDVMFTDIAPIDLLLQRAGRLHRH-KISRPKGLEKRQ 684 Query: 683 ATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDE 742 ++ PD + YG + +T+ + + + P+ + + +YD+ D+ Sbjct: 685 LYVMKPDSDDYGPANEAVYEKYYLQKTEHFLPQ----KIQLPNDISRLVQLVYDEDTDDQ 740 Query: 743 PEWVGNGMDKFESAECEKRFKARK-------------------------VLQWAEEYSLQ 777 E + DK ++ KA + +W + Sbjct: 741 VENLDEARDKLNVDRNREKSKAESFQINDPVYPAAKNDLYDDTWVEELTIHRWLDRDKGN 800 Query: 778 DNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTW 837 +D A RD S+ ++ + S L++G D E + LA + +P Sbjct: 801 LDDNQASAAVRDIRESIEVILLKEISGEYYLMNG----DKVSEMMDKDLAKELIRLPNAV 856 Query: 838 KRSFSEVV------------DEDGLLWLEGKQN---LDGWVWQGNSIVITYTGDEGMTRV 882 + + + D G WL+G + N + Y+ + G++ Sbjct: 857 TPNIEQAINILEENTAQAFPDWQGSPWLKGSLAVVLDEHAKGSFNGYKLRYSTETGLSYE 916 Query: 883 IPAN 886 + Sbjct: 917 KEVD 920 >UniRef50_D2RAZ8 CRISPR-associated helicase Cas3 n=3 Tax=Actinobacteria (class) RepID=D2RAZ8_GARVA Length = 948 Score = 501 bits (1290), Expect = e-140, Method: Composition-based stats. Identities = 203/935 (21%), Positives = 335/935 (35%), Gaps = 115/935 (12%) Query: 9 HYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQ-RVKAWL 67 WGK + L H D V W+ + LSK+ K Sbjct: 10 ALWGK-KREANGVMQWLPLAQHLEDTRNVIGQLWEHWLSGGQRRLIESSLSKRVDAKKLS 68 Query: 68 LFFIALHDIGKFDIRFQ-YKSAESWLKLNPATP-----------SLNGPSTQMCRKFNHG 115 F +HDIGK FQ KS + L+ A +T+ +H Sbjct: 69 QFLGCVHDIGKATPVFQFRKSPSNSKDLDIALKNKLATVGFTNIDYFIDTTEGSHNSHHT 128 Query: 116 AAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWE 175 G + + + E V HHG L++ +S Sbjct: 129 ITGQFILSNAGVPEGIC---------------------AIVGAHHGKPLNNDSVCRSNKS 167 Query: 176 MPASLASYAAQDKQAREEWISVLEALFLTPAG-------LSINDIPPDCSSLLAGFCSLA 228 + + + + W + + + +I LL G +A Sbjct: 168 KYPDHYYQSETESENSKLWKKLQNDILDWALERNDFSNVNDLPEISEPAQVLLCGLVIMA 227 Query: 229 DWLGSWTTTNTF------LFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEG 282 DW+ S L + Q +D L VS Y Sbjct: 228 DWIASNEHYFPLISIEQDLIENQEERYRKGWENWLQHGSKDVWESLNCCSNVSQTYKY-- 285 Query: 283 VHALLDNGYQPRQLQVLVDALP---VAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADS 339 G+ P +Q+ + + PG+ ++E+ GSGKTE +L A +L + Sbjct: 286 -----RFGFFPNNIQIALHDVISQSKEPGIFILESAMGSGKTEASLIAAEQLANLTGRSG 340 Query: 340 VIFALPTQATANAMLTRMEASASHLF----SSPNLILAHGNSRFNHLFQSIK-------- 387 V F LPTQAT+N M R+E ++ L L HG + N + ++ Sbjct: 341 VFFGLPTQATSNGMFRRVEDWLKNVNSDFQGEIGLRLVHGKAELNADYAHLQHGMQNMND 400 Query: 388 --SRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIG 445 V W + K L V T+DQ L++ L KH +R LG+ Sbjct: 401 GCESTSNSNDVNNNGVILNDWFT-GRKTAMLDDFVVGTVDQFLLASLKQKHLMLRHLGLS 459 Query: 446 RSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPV 505 + V+I+DEVHAYD YMN LE L A G V+LLSATLP K++++L+ Y Sbjct: 460 KKVVIIDEVHAYDAYMNKYLEESLIWMAAYGVPVVLLSATLPAKRRKELIKAYMCGLFGF 519 Query: 506 E-----------NNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDL 554 + YPLI + N ++ + + S++ + D Sbjct: 520 NWRECDKSNVDFETNNYPLITYSDKNCVKQ-KFIENDASDNKSVSVRK----ITDDNLHE 574 Query: 555 TMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKEN 614 +++ + + N G +I N V AQ Y + + ++ + H++F DR KE Sbjct: 575 SLVGELKSLLNNGGIAGIIVNTVKRAQEIYNACVDEF-SDDEVIVIHSQFIATDRVRKEQ 633 Query: 615 RVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYR 674 ++ + GKN R I++ TQV+EQSLD+DFD L T P DLL QR GRLHRH + Sbjct: 634 QICNMIGKNAHRPARAIIIGTQVLEQSLDIDFDVLFTDLAPIDLLLQRAGRLHRHTIERS 693 Query: 675 PAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSI 734 E + + D + + + ++ RTQ ++ + + + + + Sbjct: 694 ETFAEPILYVLGTSDRYEFDKGSESIYSKYLLMRTQYYLPNV----INMSHDISRLVQIV 749 Query: 735 YDDAEMDEPEWVGN------------------GMDKFESAECEKRFKARKVLQWAEEYSL 776 Y D ++ E + + + E + ++ Sbjct: 750 YGDNPLELQEDLKDVYAVAKREHDSVRNSNESAAKTYRIENPESEIGEKSIVGLLTNSIT 809 Query: 777 QDNDETILAVTRDGEMSLPLLPYVQTSSGKQLL--DGQVYEDLSHEQQYEALALNRVNVP 834 ++DE A R+ S+ ++ + SG L + +++ + LA V +P Sbjct: 810 NESDEFACAQVRNSGESIEVIAVKRVGSGYGTLHDCKDISQNIDDVEVAMKLAQETVGLP 869 Query: 835 FTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSI 869 + + + V + L KQN W Sbjct: 870 WMFTLNSDRVDETIAELERIRKQN-QFKNWDNQPW 903 >UniRef50_D1CAJ4 CRISPR-associated helicase Cas3 n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1CAJ4_SPHTD Length = 936 Score = 501 bits (1289), Expect = e-140, Method: Composition-based stats. Identities = 233/921 (25%), Positives = 364/921 (39%), Gaps = 97/921 (10%) Query: 10 YWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQ--SVVLQNTFCRNEMLSKQRVKAWL 67 W K S+ H L+ H LDVA VA WD S ++ LS+ W+ Sbjct: 9 LWAKRSRVP-GDPAYHPLLCHLLDVALVARVMWDDVLSPAVRRYLAAAFGLSETDAGPWI 67 Query: 68 LFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSL 127 F LHD+GK FQ + L A L R HG+ + + Sbjct: 68 AFLTGLHDLGKASPAFQLTWTAAHSLLRDAGFPL-PQRPLDPRATPHGSVTAATLPEILV 126 Query: 128 SEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQD 187 +E L + + GHHG + D ++A Sbjct: 127 AEFQLDNQL------------ARRLGTVIGGHHGIFPRAHDLCDM-----PTVAVGRGPW 169 Query: 188 KQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAP 247 AR + L + P I + LAG S+ADW+GS F + A Sbjct: 170 NTARAALVRELASHIGVPRDAVPRGIDNPAAMTLAGLVSVADWIGSDDLIFPFAAADAAA 229 Query: 248 SDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGY-QPRQLQVLVDALPVA 306 + R Y++ + A++ + + ++ E + P LQ V L Sbjct: 230 ASSLDFRNYYRQAEGQAAQAMARLAWLKSRAGAEPRAFSDLFPHITPNALQEAVIELARD 289 Query: 307 ---PGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASH 363 P L ++EAP G GKTE AL A + A+PTQAT+N M R+ Sbjct: 290 LPHPSLVIVEAPMGEGKTEAALFLADHMNAVGGNRGTYVAMPTQATSNQMFGRVRDYLIP 349 Query: 364 LFSSP--NLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQ----------CCQWLSQSN 411 F + NL L HG++ N F +++ R E +W + Sbjct: 350 RFDTETVNLQLLHGHAALNAEFAALRQRTDALLSPREDDADQDPEIASGVVAAEWFTY-R 408 Query: 412 KKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKA 471 K+ L GV TIDQ L++VL +H F+R G+ +++DEVHAYDTYM+ LLE +L+ Sbjct: 409 KRGLLSPFGVGTIDQALLAVLQTRHVFVRLFGLAGKTVVIDEVHAYDTYMSTLLERLLEW 468 Query: 472 QADVGGSVILLSATLPMKQKQKLLDTYGLHTD------PVENNSAYPLINWRGVNGAQRF 525 A +G VILLSATLP ++ L Y D + ++ YP + W NG Sbjct: 469 LAALGSPVILLSATLPDARRATLARAYAAGLDTPSLEPRTDPSAVYPRVTWVTRNGIN-S 527 Query: 526 DLLAHPEQLPPRFSIQPEPICLADMLPDLTML-ERMIAAANAGAQVCLICNLVDVAQVCY 584 + + I L + + L +++ AA G ++CN V AQ Y Sbjct: 528 RHVPASARTTRSVGIGWVDGRLPETPEEPFPLGKQLEAALEPGGCAVVVCNTVGRAQAVY 587 Query: 585 QRLKELN-----NTQVDIDLFHARFTLNDRREKENRVISNFGKNG------------KRN 627 Q LK + + ++DL HARF +++R+ +E R + FGK G +R Sbjct: 588 QALKRYFQGVADDGEPELDLLHARFLVDERQHREQRALRRFGKPGGVVTTEEGTIQVRRP 647 Query: 628 VGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILL 687 +L+ATQ+VEQSLD+DFD ++T PADL+ QR GRLHRH R RP G E+P I Sbjct: 648 KRAVLIATQIVEQSLDLDFDLMVTDLAPADLVLQRAGRLHRHRRDARPRGLEVPRLWICR 707 Query: 688 PDG-----EGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDA--EM 740 P+ + + + R+ + + + ++ PD ++++YDD Sbjct: 708 PEHITEGVPVFDHGTTAVYDAHALLRSWLVLRDRD--AIAIPDEIPDLIEAVYDDRPCPA 765 Query: 741 DEPEWVGNGMDKF--ESAECEKRFKARKVLQWAEEY----------------SLQDNDET 782 EP V ++ E ++ A ++W + D + Sbjct: 766 TEPPTVRAAWEETRQRYEELAEKDAAEAAVRWIKRPGAGGFIWQMTANARAEDAPDFHQA 825 Query: 783 ILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFS 842 A+TR S+ ++ +DG++ D + + + +N+ Sbjct: 826 HQALTRLTPPSVSVVCLFD-------VDGRLALDPAGREVIDLSEPPSLNLTRRLLARSV 878 Query: 843 EVVDEDGLLWLEGKQNLDGWV 863 + D + L W Sbjct: 879 TLSDRRVVPELLTTDPPTAWR 899 >UniRef50_A1SV69 CRISPR-associated helicase, Cas3 family n=2 Tax=Gammaproteobacteria RepID=A1SV69_PSYIN Length = 823 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 298/866 (34%), Positives = 446/866 (51%), Gaps = 97/866 (11%) Query: 6 YICHYWGKSS-KSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVK 64 YWGK+ +S G D HLL YHCLDV AVAD W ++S +L + ++ + K Sbjct: 17 TYFMYWGKAKSESQATGADYHLLPYHCLDVTAVADVWLEESNILLSQISCYLDTTQDQAK 76 Query: 65 AWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQ 124 LFFI LHD+GKFD RFQ + L + T ++HG+ G F++ Sbjct: 77 RICLFFILLHDLGKFDARFQNFREDIRQILQGDDWEIEPDPTY----YSHGSCGYRQFSE 132 Query: 125 DSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYA 184 + +++ AV GHHG SQ P + Sbjct: 133 MFDTNEAMK---------------------AVAGHHGSCDTSQPYHD-----PDADDELL 166 Query: 185 AQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNE 244 D+QAR+EW+ + DIP +LAG CS+ADW+GS T T + Sbjct: 167 ELDEQARKEWVEFSLDFCQLKEVPDVGDIP-----MLAGLCSVADWVGSSITNFTTDPSI 221 Query: 245 DAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALP 304 + L+ Y+QD A + L +G++ ++ A L NGY+PR +Q L+ +P Sbjct: 222 N-------LQQYYQDTLLRARKALVDTGMI--EKSQGAGFAYLFNGYRPRGIQTLLSEMP 272 Query: 305 VAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHL 364 + GLT++E+ TGSGKTE ALAYA LI+ +AD V+F LPTQATAN + +R+ +A L Sbjct: 273 LKAGLTLVESDTGSGKTEFALAYASSLIEAGLADGVVFGLPTQATANGLFSRVGDAAKKL 332 Query: 365 FSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTI 424 F LAHG S++ +S +L QSNK+ FLG + V TI Sbjct: 333 FPDTKTTLAHGKSKYLMSDESG-------------------FLQQSNKRAFLGSMSVATI 373 Query: 425 DQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSA 484 DQ+L+ VL ++H+F+R G +SVL++DE+H++D YM GL+E VLK Q SVILLSA Sbjct: 374 DQILMGVLGIRHQFVRSFGTRKSVLVLDEIHSFDAYMLGLIEQVLKGQHQAYSSVILLSA 433 Query: 485 TLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEP 544 TLP K+KLL TY + N+AYPL++ + + L + +I + Sbjct: 434 TLPNTLKEKLLSTYKGKSL----NNAYPLVSHTDLFATTQEFTLP---KQATNKTITLKT 486 Query: 545 ICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARF 604 C D+LP + ++MI + GA V +ICN V AQ Y ++K + N ++ I+LFHARF Sbjct: 487 WCSDDLLPSINQRKKMIDWVSQGAMVGVICNTVKDAQRLYHQIK-IANPELKIELFHARF 545 Query: 605 TLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLG 664 T DR+++E++V+ N+ KN KR GR+L+ATQV+EQSLD+DFD LI+Q P + L QR+G Sbjct: 546 TFGDRKKREDQVLKNYDKNAKR-TGRLLIATQVIEQSLDLDFDVLISQIAPIEFLMQRMG 604 Query: 665 RLHRHHRK-----YRPAGFEIPVATILLPDGE------------GYGRHEHIYSNVRVMW 707 RL RH R R + + P+ LLP+ + Y ++Y N R+++ Sbjct: 605 RLWRHERIDSGLCPRASCIKAPLFITLLPNEKITDLTSSEQLKHHYQGSGYVYQNSRLLY 664 Query: 708 RTQQHIEELNGASLFFPDAYRQWLDSIYDDAEM-DEPEWVGNGMDKFESAECEKRFKARK 766 RT+Q++ + L FPD YR+ ++ ++++ +EP+ + + D++ + AR Sbjct: 665 RTEQYLNQHPL--LHFPDCYREAINYVHEEQSYSEEPQVLTSVADEYSIIADGSNYTARS 722 Query: 767 VLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEAL 826 + + + L D D +TRDGEMS ++ + G L G E E AL Sbjct: 723 LSKLQSKP-LNDVDPRCALLTRDGEMSATVVLFK--EDGSLLHGGDFNEQQDRENSTVAL 779 Query: 827 ALNRVN-VPFTWKRSFSEVVDEDGLL 851 A + + VVD+D + Sbjct: 780 AKKHAKGIKDERYYCYKAVVDKDIIY 805 >UniRef50_C0W6U4 CRISPR-associated helicase n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W6U4_9ACTO Length = 981 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 226/997 (22%), Positives = 342/997 (34%), Gaps = 130/997 (13%) Query: 1 MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQS--VVLQNTFCRNEML 58 M W KS + + L H LD AAV+ + + R Sbjct: 1 MNLSSTAAAAWAKSGYNPERE-RWLPLPIHLLDTAAVSRHLAKNWLSPSICSIIDREFAT 59 Query: 59 SK------QRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKF 112 S + A + +HDIGK F K E + ++ + RK Sbjct: 60 SPSGLSPSEEFTALAAWISGVHDIGKASPAFASKVPELYDRMCESGFERVPVDPLERRKV 119 Query: 113 NHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKS 172 HG AG F Q + +ES V HHG +S Sbjct: 120 PHGLAGHRIFQQW------------LENVHGWSFESAEALACIVGAHHGIPPTYASLQES 167 Query: 173 RWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLG 232 P + E ++ + A S +L+G +ADWL Sbjct: 168 EGREPLIGTGTWTTVQNELLELVTEHCEVSSLLAHWSKRTWSQPFLVILSGLVIVADWLA 227 Query: 233 SWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYE-----GVHALL 287 S + +D D+ A + Q Q +R+ + L Sbjct: 228 STEDYFPLVSADDDGRDLLAPDRHRQRVTQGLARIELPAPWRPRDEEAGVSDTLRHRFSL 287 Query: 288 DNGYQPRQLQVLVDALPVA---PGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFAL 344 G ++Q + PG+ +IE TG GKTE AL A L + V+FAL Sbjct: 288 PEGSTATEVQTRAVEMARTMPMPGMLIIEDSTGGGKTEAALMAAEVLAARSGRAGVLFAL 347 Query: 345 PTQATANAMLTRMEASASHLFSSPN---------LILAHGNSRFNHLFQSIKSRAITEQG 395 PTQAT +AM R + L + + L HG +R N ++ R + Sbjct: 348 PTQATTDAMFARELSWLESLEEAYASDGAPSTFAVQLIHGRARLNKQAGQLRRRGYELRS 407 Query: 396 Q------------------------------------EEAWVQCCQWLSQSNKKVFLGQI 419 Q A + W + KK L Sbjct: 408 QLLGSLGGDDSTLPHPCQIGWDEIEARAGRELDSSHGRRADIAIGAWFN-GRKKAMLADF 466 Query: 420 GVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSV 479 V T+D +L + H +R LG+ R V+IVDEVH+Y T+MN L+ L A G V Sbjct: 467 VVTTVDHLLFGAMRSPHLALRHLGLSRKVVIVDEVHSYSTHMNVYLDRALTWLAAYGVPV 526 Query: 480 ILLSATLPMKQKQKLLDTYGLHTDPVE--NNSAYPLINWRGVNGAQRFDLLAHPEQLPPR 537 ILLSATL + +L Y + +P + ++ Sbjct: 527 ILLSATLSQARCAELTSAYRHGLALADGQRVPRHPSPDPLSTPFPCLVSTGLAGSRVVGS 586 Query: 538 FSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDI 597 S D L ++ + A + G ++ N V AQ Y+ L+ ++ Sbjct: 587 SSAGRTARVHVDRLGRDQLVPTLRMALSDGGCALVVRNTVRRAQETYELLRSELGE--EV 644 Query: 598 DLFHARFTLNDRREKENRVISNFGK---NGKRNVGRILVATQVVEQSLDVDFDWLITQHC 654 + HARFT+ DR K++ ++ FG R ++VATQVVEQSLDVDFD LIT Sbjct: 645 SVHHARFTVGDRLAKDDELLKKFGPPRSGPDRPHRAVVVATQVVEQSLDVDFDLLITDLA 704 Query: 655 PADLLFQRLGRLHRHHRKYRPAGFEIPVATILLP-----DGEGYGRHEHIYSNVRVMWRT 709 P DL+ QR+GRLHRH R + E LP G + IY ++ ++ R+ Sbjct: 705 PIDLILQRMGRLHRHERPRPASLTEATCLVDWLPTPTSESPSLEGGAQAIYGSLDLL-RS 763 Query: 710 QQHIEELNG--ASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKV 767 + ++ + P ++ +Y + P W + A+ KR K Sbjct: 764 AAVLHKVMEGPGEVRIPQDVHALIEGVYGELVSTPPAWDKALAEAASKADELKRAKTDAA 823 Query: 768 LQWAEEYSLQ----------------DNDETILAVTRDGEMSLPLLPYVQTSSG-----K 806 + + DNDE A RDGE SL ++ G Sbjct: 824 RTFLLSSPPRASCASSLIGWLHSAALDNDEKGRAQVRDGEDSLEVILIDARRQGGQVGLY 883 Query: 807 QLLDGQVY------EDLSHEQQYEALALNRVNVPFTWK--RSFSEVVDE-DGLLWLEGK- 856 L +D + A+A++ V +P R V+ E + L + Sbjct: 884 TLPTAGAPALPIPDDDAPEPKVARAMAMSAVRLPPRLSNPRVIDTVISELETRLVPAWQS 943 Query: 857 ---------QNLDGWVWQGNSIVITYTGDEGMTRVIP 884 L+ I + Y+ G+ V P Sbjct: 944 IPELAGQLVLPLEHGRATLAGITLEYSSSTGLKEVSP 980 >UniRef50_B4RSJ9 CRISPR-associated helicase Cas3 n=3 Tax=Gammaproteobacteria RepID=B4RSJ9_ALTMD Length = 915 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 243/928 (26%), Positives = 398/928 (42%), Gaps = 80/928 (8%) Query: 5 KYICHYWGKSSKSLTK-GNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRV 63 YWGK+ K + G D HLL YHCLDVAAV W D L + + + Sbjct: 6 PPYFRYWGKAKKDSEQSGADYHLLPYHCLDVAAVCYEWLDTDTKLAGELSDYLAIPRDQF 65 Query: 64 KAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFN 123 K+ + FF+A+HD+GKF FQ + KL N + + H G +++ Sbjct: 66 KSLMSFFMAMHDLGKFASAFQALYSSDSTKLI----LTNSRKSYDGSHYRHDRLGTWFWR 121 Query: 124 --QDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLA 181 + + E+ + + ++ + GHHG + + + +L Sbjct: 122 KLRQQICERCTEGHGLNRRQLKYLTKPLNIIMDCMLGHHGVPVELDEPGIEGFTESQNL- 180 Query: 182 SYAAQDKQAREEWISVLEALFLTPAGLSINDIP---PDCSSLLAGFCSLADWLGSWTTTN 238 + + + I++ + F + +D S +AG L DW+GS Sbjct: 181 ---SASEAFTLDLITLFQPEFTEVMIQNDSDWLVKLKQVSWHIAGIAVLCDWIGSDQADF 237 Query: 239 TFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQV 298 ++ SD L Y+Q ++ A R LE L+ + + G+ P LQ Sbjct: 238 PYV------SDEMPLDIYWQTAKKQAKRALESKQLIRSFNVAPFLSVENSFGFSPTPLQS 291 Query: 299 LVDALP--VAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTR 356 + + P L ++E TG+GKTE AL A +L+++ +A F LPT AT+NAM R Sbjct: 292 WAEKVEITDTPQLFILEDVTGAGKTEAALTLAHRLMEKGVASGFYFGLPTMATSNAMYKR 351 Query: 357 MEA----SASHLFSSPNLILAHGNSRFNHLFQ-----SIKSRAITEQGQEEAWVQCCQWL 407 + + P+++LAHG N LFQ S K + + A +C +WL Sbjct: 352 VTEHYLSMYESVAKKPSIVLAHGAREMNPLFQQTVITSGKDNSDYNAEDKTALAECHRWL 411 Query: 408 SQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEA 467 + S KK L +GV TIDQ L++VLP +H+ +R LG+ VL+ DEVHA D YM LLE Sbjct: 412 ADSRKKALLAPVGVGTIDQALLAVLPKRHQSLRLLGLHNKVLVFDEVHAADEYMFELLEG 471 Query: 468 VLKAQADVGGSVILLSATLPMKQKQKLLDTY--GLHTDPVENN----SAYPLINWRGVNG 521 +LK GGSVILL+ATLP+KQ++KL++ + ++ + S +PL Sbjct: 472 LLKLHLHQGGSVILLTATLPLKQRKKLVEIWQVATGSEVILPKKTSFSDFPLATHVAPGT 531 Query: 522 AQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQ 581 E P + + + + + +ER+I +G V + N VD A Sbjct: 532 KN-----PVQEHTMPSREAVSRAVTVTFLHDEASCIERIINTIESGVCVVWVRNSVDDAL 586 Query: 582 VCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRN--VGRILVATQVVE 639 Y L + D LFH+RFTLNDR E +V++ FGK+ G++L+ATQV + Sbjct: 587 AAYSTLSTQMSNPDDCILFHSRFTLNDRNLIEAKVLNVFGKHADAGSRAGKVLIATQVFQ 646 Query: 640 QSLDVDFDWLITQHCPADLLFQRLGRLHRHHR-------KYRPAGFEIPVATILLPDGE- 691 +SLD D D +I+ CP D L QR GRLHRH R +P P + P Sbjct: 647 ESLDADCDLMISDICPIDDLIQRAGRLHRHSRDKQGKFTPGKPDQRGQPELIVHAPHWSD 706 Query: 692 ---------GYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDA--EM 740 + ++Y + +W + + +L ++ P+ RQ ++++Y D E Sbjct: 707 KPGEDWVRQDFRNTSYVYPSAGRLWLGMRELLKL--GTMRMPENARQLIEAVYSDEGREQ 764 Query: 741 DEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQD----NDETILAVTRDGEMSLPL 796 + + + L W Y + + ++ + TR E Sbjct: 765 IPASLIAQEQRVMGDERARENQAFARKLNWETGYQITNRGRWEEDEVEINTRLSEREEVQ 824 Query: 797 LPYVQTSSGKQL----LDGQVYEDLSHEQQYE-ALALNRVNVPFTWKRSFSEVVDEDGLL 851 + ++ + ++L Q LS + + A N VP ++ +++ + +L Sbjct: 825 IVLLKVDAQERLTFWCEHKQHAIQLSTLKLAKNKYADNLSPVPEKYQEQLDKLIAKYPVL 884 Query: 852 WLEGKQNLDGWVWQGNSIVITYTGDEGM 879 + W+ + + Y+ G Sbjct: 885 KFK-----QCWIPEQDE-RFGYSPVSGF 906 >UniRef50_A5GBL7 CRISPR-associated helicase Cas3 n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5GBL7_GEOUR Length = 854 Score = 496 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 216/854 (25%), Positives = 333/854 (38%), Gaps = 76/854 (8%) Query: 1 MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSK 60 M +W K++ G ++ H L+V VA C + S + F Sbjct: 1 MNDLPTYFGFWAKTTPEGKPGISVY---DHMLNVGCVARCIAETSPKILERFHLES---- 53 Query: 61 QRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLY 120 + + ALHD+GK FQ K ++WL+ + +HG Sbjct: 54 ----SMVGALAALHDLGKISPGFQRKC-DAWLEEYGLNIIARNGCWDTAMESDHGKISHA 108 Query: 121 WFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASL 180 + +F ++ + HHG + D+ ++ + Sbjct: 109 AIH-------------AFLIETGMDRKTAKFASAVLGAHHGRLTPPNDRGYRPQKLISDS 155 Query: 181 ASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTF 240 AS D + +E + A S++D P LAG S+ADW+GS Sbjct: 156 ASKIDWDNERKENARMTWAHFSGSSAEFSLSDDSPAL-WWLAGLTSVADWIGSDERFF-- 212 Query: 241 LFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLV 300 R +D A L+ G + + +Q Sbjct: 213 ---------SPERRASDEDVTTLARMALDAIGFLP-PIINTNHSFESIFDFPSNDMQAKA 262 Query: 301 DALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEAS 360 A PG+ VIEAP G GKTE AL A++L+ A+ + FALPTQAT+N + RM Sbjct: 263 LATITGPGVYVIEAPMGMGKTEAALGAAYQLMVSGKANGIYFALPTQATSNRIHLRMNEF 322 Query: 361 ASHLFSSPNLI-LAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQI 419 + L HGNS I A ++ + + S K+ + Sbjct: 323 LRRIAPEAQASRLIHGNSWLMQTDFGICPAATGKKEATTDDARAGRDWFASAKRALIAPF 382 Query: 420 GVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSV 479 GV T+DQ L+ V+ KH F+R + V+I+DE+H+YD Y L++ ++ +G +V Sbjct: 383 GVGTVDQALLGVVAAKHFFVRHFALAGKVVILDEIHSYDLYTGTLIDKLITTLEGLGCTV 442 Query: 480 ILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFS 539 I+LSATL K++ +++ G D E YPLI R N Q F +A + Sbjct: 443 IVLSATLTGKRRGQMVSCQGDLADEAER--PYPLITGR--NEGQTFVPVAAKPPASRSVT 498 Query: 540 IQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDL 599 ++ + E I A G V ICN V AQ Y+ K + + L Sbjct: 499 VEFRAVD--------AATEEAIRVARNGGAVLWICNTVSAAQKQYRSFK---GLEFPVGL 547 Query: 600 FHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLL 659 H+RF R + E + FGK G G ILV+TQVVEQS+D+D D +IT+ P D+L Sbjct: 548 LHSRFPFWQREKLEVEWMERFGKKGTTRCGSILVSTQVVEQSVDLDADLMITELAPTDML 607 Query: 660 FQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYG-----------RHEHIYSNVRVMWR 708 QRLGRL RH RK RP E + + ++ R Sbjct: 608 LQRLGRLWRHDRKQRPVDVARLCIIEEDKSLEEFQIMEPKAIMKSLGSKAKVYAPFILLR 667 Query: 709 TQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVL 768 + + + + P RQ ++S Y + + D W + F + ++ R Sbjct: 668 SLEVWKAQTQ-PVSIPSQIRQLIESTYMERDTDPDSWQELFNEWFGTDSAKEMIATRNCN 726 Query: 769 QWAEEYSLQDNDETILAVTRDGEM-SLPLLPYVQTSSGKQLL----DGQVYEDLSHEQQY 823 W + +L D + TR EM ++PL+ S + + GQV D Sbjct: 727 IW--QVALNDEEG---VQTRLNEMPTIPLVLCRALSEKEAVFVDRSKGQVGGDDYLLAVA 781 Query: 824 EALALNRVNVPFTW 837 +A+ N V VP Sbjct: 782 QAIHRNLVRVPRYL 795 >UniRef50_C6C422 CRISPR-associated helicase Cas3 n=6 Tax=Enterobacteriaceae RepID=C6C422_DICDC Length = 912 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 246/930 (26%), Positives = 360/930 (38%), Gaps = 83/930 (8%) Query: 3 PFKYICHYWGK--SSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSK 60 HYWGK SS G HLL YH LDVAA + + L + Sbjct: 10 LSAPYFHYWGKAQSSSENENGAAYHLLPYHGLDVAACGYWLVKHNRFHARDHLQALGLHE 69 Query: 61 QRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLY 120 + WL +F+A HDIGKF FQ L NP P + ST H + GL+ Sbjct: 70 EHAALWLAWFLAWHDIGKFARGFQR------LYQNPDAPLV--QSTGQVSSARHDSLGLW 121 Query: 121 WF-NQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPAS 179 + Q Q D+ A + W+ + GHHG D + Sbjct: 122 LWRYQLYDRWQQDADWLPTVSRADKFHHVMDLWLRLMCGHHGQPPVEDDNGALAFHPDDI 181 Query: 180 LASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNT 239 LA+ A L A T + + S LAG LADW+GS Sbjct: 182 LAAQAYL--TDLRTVFPELTAFPDTFSDRRWRALLQQQSWPLAGCVVLADWIGSSQADFP 239 Query: 240 FLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVL 299 + A +D + Q A + + ++ ++AL QP LQ Sbjct: 240 YHAGPLALADY-----WHQHALPQAESAVLRLPAACHVAPFQSMNALFPFITQPTPLQQQ 294 Query: 300 VDALP---VAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTR 356 ++ P L ++E TG+GKTE AL +L+ D V LPT ATANAM R Sbjct: 295 AMSVDINTPGPQLFLLEDVTGAGKTEAALVLTHRLLSAGFGDGVYVGLPTMATANAMYRR 354 Query: 357 MEASASHLF---SSPNLILAHGNSRFNHLFQSIKSRAITE------QGQEEAWVQCCQWL 407 + + LF SP+L+LAHG FQ + A C QW Sbjct: 355 LATAYRMLFNEPGSPSLMLAHGARDMVTDFQLSLWAPEQTGPMRYGPDENSASAACNQWF 414 Query: 408 SQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEA 467 + S KK L +GV T+DQ L++V+P +H+ +R LG +L++DEVHAYD Y + LLE Sbjct: 415 ADSRKKALLADVGVGTLDQALMAVMPFRHQSLRLLGFNGKILLLDEVHAYDAYTSRLLEN 474 Query: 468 VLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVE----NNSAYPLINWRGVNGAQ 523 +L A GGS I+L+ATL Q+++L+ + + YP V Sbjct: 475 LLAFHASQGGSAIILTATLAASQRERLVQAFYRGVQQPPGTLAKQAGYPWFTQVNVQALH 534 Query: 524 RFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVC 583 + L E + + + + + + AG VC I N VD A Sbjct: 535 EWPLATRAEVC--------RTVAVDWLSRSAEAIALIRRSVAAGQCVCWIRNTVDDAIAA 586 Query: 584 YQRLKELNN-TQVDIDLFHARFTLNDRREKENRVISNFGK--NGKRNVGRILVATQVVEQ 640 +++L + + D+ LFH+RF DR E+ + FGK +G+ G++L+ATQVVEQ Sbjct: 587 WRQLCQCDEIAPDDVLLFHSRFAFCDRLAIEDTAVERFGKHSDGRARRGKVLIATQVVEQ 646 Query: 641 SLDVDFDWLITQHCPADLLFQRLGRLHRHHRK------------YRPAGFEIPVATILLP 688 SLD+D D +I+ P DLL QR GRL RH R+ R PV +L P Sbjct: 647 SLDIDVDVMISDLAPVDLLIQRAGRLQRHIRRADGGCKRPDDAAPRQDDRPAPVLWVLAP 706 Query: 689 DGEG----------YGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDA 738 + + +YS+ V+WRTQ + E +L P+ R +DS+Y+ Sbjct: 707 EWQPDAGRDWLGAELRGTGAVYSHQAVLWRTQAILRER--GALRMPEEARLLIDSVYEQR 764 Query: 739 EMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDE----TILAVTRDGEMSL 794 ++ A+ L ++ Y TR GE SL Sbjct: 765 IAAPAALEAGDYQAEGKQLGDRTIAAQSSLTFSLGYCAAAAQRGWSDDAELFTRAGEDSL 824 Query: 795 PLLPYVQTSSGKQLL-----DGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDG 849 + + L +G+ + S W E + Sbjct: 825 DVYLAWRADHDDALPRPYAGEGEFGWEKSRLSVRRNWWRQH---EKQWPTLQGEARERFR 881 Query: 850 LLWLEGKQNLDGWVWQGNSIVITYTGDEGM 879 + + + Y D G+ Sbjct: 882 QQL--HRPGAEVLLLTPGEAADYYHADRGL 909 >UniRef50_A8LYZ3 CRISPR-associated helicase Cas3 n=1 Tax=Salinispora arenicola CNS-205 RepID=A8LYZ3_SALAI Length = 929 Score = 492 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 217/842 (25%), Positives = 335/842 (39%), Gaps = 63/842 (7%) Query: 8 CHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNT--FCRNEMLSKQRVKA 65 WGKS+ + L++H +D AAVA WD+ + K+ Sbjct: 10 AGIWGKSNHLPRP----YPLLWHLIDTAAVAGALWDRYLAPNQRRVIAEGLATDDSHAKS 65 Query: 66 WLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQD 125 ++F+ LHD+GK FQ K ++ L A H AG Sbjct: 66 LIMFWAGLHDVGKATPGFQKKDGSAFDALRSAGS---YEDVVGDGSLRHDTAGQLAMPDL 122 Query: 126 SLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAA 185 D + + V GHHG + R ++ Sbjct: 123 LAPLGYPPLVRRVSD------RLAYRVAQIVGGHHGRFQQTSGPHGGRLQLGEGG----- 171 Query: 186 QDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNED 245 + R + V+ +P I S L+ G LADWL S + Sbjct: 172 -WSKQRAALVRVVHEAVGSPERPPA--IGAAASVLVTGVVILADWLASQEHFLRQQSSRV 228 Query: 246 AP-SDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQV----LV 300 + A+ T+ A+ +L+ +GL S Y + ++P LQ + Sbjct: 229 PQYTGAEAVSTHLAVLSAPAAALLDDAGLGSP--SYRALGFEDLFPHRPNALQRSIIEEL 286 Query: 301 DALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEAS 360 + +PGL V+ A TG GKTE AL A +L + A FALPT AT++ M R+ A Sbjct: 287 LPVVDSPGLLVVTAATGDGKTEAALVAAKRLAEVCGAHGFFFALPTMATSDEMYRRVRAF 346 Query: 361 ASHLFSSPN-LILAHGNSRFNHLFQSIKSRAITE-----QGQEEAWVQCCQWLSQSNKKV 414 A+ L + P + L H S N +++ + + V +WL + K+ Sbjct: 347 AARLAAGPAPVTLLHSMSWLNAEYEARAGVDPGDAAEVVSDEPSGDVVAPEWL-RGPKRG 405 Query: 415 FLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQAD 474 L + V T+DQ L++VL KH +R L + V +VDE HAYD + LL +L Sbjct: 406 LLAPMAVGTVDQALLAVLTTKHNALRLLALSGKVFVVDEAHAYDDFTTSLLCGLLNWLGA 465 Query: 475 VGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQL 534 G V+LLSATLP Q L+ Y N++ P W V Q D ++ + Sbjct: 466 YGCPVVLLSATLPSSQAATLVGAYEEGAGVGPTNTSVPYPGWTFVPAIQGRDTVSISPTM 525 Query: 535 P--------PRFSIQPEPI-----CLADMLPDLTMLERMIA-AANAGAQVCLICNLVDVA 580 F++ P+ +D ++ +++A A G ++CN V+ A Sbjct: 526 REALVSGRTVEFTLDVRPVRHLVGSESDPADRRAVVRQVLAPVAEQGGCAAVVCNTVNDA 585 Query: 581 QVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQ 640 Q Y+ +++ + VD+ L H+RF R E ++I GK+G R I+VATQV+EQ Sbjct: 586 QQTYRVVRDWASGGVDVVLLHSRFPARRREEITTQIIGRLGKDGHRPRSMIVVATQVLEQ 645 Query: 641 SLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILL---PDGEGYGRHE 697 SLD+DFD L+T P L QR GR HRH R+ RP P +L PDG + R Sbjct: 646 SLDLDFDLLVTDLAPMAQLLQRAGRCHRH-RRTRPPWAAQPRVVVLDPRGPDGVEHVRPA 704 Query: 698 HIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAE 757 H+ + P A + ++++Y +D + D++ + Sbjct: 705 AWGDVYARYLLRATHLRLAGTDRIAVPHAVQNQVEAVYSPQSVDHDLVLSAEYDEYRAEA 764 Query: 758 CEKRFKAR-------KVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLD 810 R A + SL + E A TR G S +L + G+Q LD Sbjct: 765 MALRGMAELGVIPDPAQVADLAALSLTETPE-WRASTRLGAESERVLCCYLDAGGRQWLD 823 Query: 811 GQ 812 + Sbjct: 824 PE 825 >UniRef50_C7LYX0 CRISPR-associated helicase Cas3 n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LYX0_ACIFD Length = 922 Score = 487 bits (1254), Expect = e-136, Method: Composition-based stats. Identities = 231/905 (25%), Positives = 346/905 (38%), Gaps = 78/905 (8%) Query: 3 PFKYICHYWGKSSKSLTKGN--DIHLLIYHCLDVAAVADCWWDQSVVLQN-TFCRNEMLS 59 P W K+S++ T+ H L H +D A VA W + + + Sbjct: 14 PIPPAFWLWAKTSRAPTEPPTYRWHPLAAHLVDAALVAQQLWAGWLSPSTKRWLGEPLGG 73 Query: 60 KQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGL 119 + +A HD+GK FQ + +L A +++ P Q K H A Sbjct: 74 EDHARALFALLAGCHDLGKATPAFQIQVDWLHPQLRDAGLAVDKPLPQ-RSKAPHALASA 132 Query: 120 YWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPAS 179 A + + GHHG+ ++ + P Sbjct: 133 ATV-------------QPLLAARGWSEPAIRGVAAILGGHHGWFP-PLGYEREPIKRPEL 178 Query: 180 LASYAAQDKQAREEWISVLEALFLTPAGLS----------INDIPPDCSSLLAGFCSLAD 229 A + W + E LF ++ ++ LAGF LAD Sbjct: 179 YGLAGRPLGGAGDPWSAARERLFDLVVEVAGAQQVLGLAGTTELGSARRLALAGFVILAD 238 Query: 230 WLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKR---CYEGVHAL 286 W+ S +L + Y QQ A+ L G Sbjct: 239 WIASNEQLFPYLC-------LPYDDAYLHAAQQRAAEALVQLGWHGVANLGAVVGAPAFE 291 Query: 287 LDNGYQPRQLQVLVDALPV--APGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFAL 344 G+ P LQ GL +IEAP G GKTE ALA A L +Q L Sbjct: 292 HRFGFSPNALQRQTLEAVEQGDGGLVLIEAPMGMGKTEAALAAAEVLATRQGHGGAFIGL 351 Query: 345 PTQATANAMLTRMEASASHLFSSPNLI-LAHGNSRFNHLFQSIKSR----AITEQGQEEA 399 PTQAT+N M R L ++ LAHG ++ F+ + A+ + A Sbjct: 352 PTQATSNQMFHRTRRWLEQLGPGTFVLELAHGRAQQVPAFRDLLENGAPSAVDVDEGDIA 411 Query: 400 WVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDT 459 V W + K+ L V TIDQ+L+ V+H +R +G+ V+I+DEVHAYD Sbjct: 412 RVTAEAWFT-GPKRRLLAPFVVGTIDQILLGTAKVRHVALRHVGLAGKVVILDEVHAYDA 470 Query: 460 YMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGV 519 YM+ L VL+ VILLSATLP + +L++ Y H+ P+ YP I Sbjct: 471 YMSVFLRRVLEWLGAERIPVILLSATLPPAVRARLIEAYAGHSTPL-GLVGYPSITTVST 529 Query: 520 NGAQRFDLLAHPEQLPPRFSIQPEPICLA-DMLPDLTMLERMIAAANAGAQVCLICNLVD 578 +G +A +++ E + + + +LE + A AGA + +I N V Sbjct: 530 DGHVTTTPVATDAS---SVTVRLEHLDEDPEDESSMPLLEMVAQMAEAGANILVIRNTVA 586 Query: 579 VAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVV 638 AQ Y+ + E + L HARFT DR KE+ + +FG+ G R G+++V TQV+ Sbjct: 587 RAQRTYRAVAERRPMGT-VHLLHARFTTADRLRKESWLAEHFGRGGTRLSGQVVVGTQVL 645 Query: 639 EQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEH 698 EQSLD+DFD L T P DL+ QR+GR+HRH RP GF P + G Sbjct: 646 EQSLDIDFDVLATDLAPVDLVLQRIGRVHRHRGTRRPVGFTEPRVIVTGFTRSPTGPPAF 705 Query: 699 IYSNVRV---MWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFES 755 +VRV + L SL PD + ++Y D ++ P W +G Sbjct: 706 PSGSVRVYGEHLLLRTAALLLARDSLTLPDDVPSLVAAVYGDDDVIAPAWHDHGARVAVE 765 Query: 756 AECEKRFKARKVLQW-------------AEEYSL----QDNDETILAVTRDGEMSLPLLP 798 + E+ + R+ Q+ E L D+D + A RD S+ + Sbjct: 766 WQSEQHERERRAEQFVISDPTRAGYLLELERIRLGDPEDDDDPRVQAAVRDSVPSIEVAI 825 Query: 799 YVQTSSGKQLLDGQVYEDLSHEQQ---YEALALNRVNVPFTWKRSFSEV---VDEDGLLW 852 S G L H EA+ + V +P + + + W Sbjct: 826 ACVGPSPNIARFGTTEVSLEHPPTPDDVEAVLGSVVRLPSYLTEAATSLAVPEGWRRHPW 885 Query: 853 LEGKQ 857 L ++ Sbjct: 886 LRRQR 890 >UniRef50_Q0W588 Putative CRISPR-associated helicase n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W588_UNCMA Length = 889 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 239/935 (25%), Positives = 370/935 (39%), Gaps = 109/935 (11%) Query: 1 MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSV--VLQNTFCRNEML 58 M ++ + W KS H L+YH +D VA V+ + F + Sbjct: 1 MAEYEDLLKIWAKSDP-------FHPLLYHMIDAGNVALSLLQTPAFKVVGDKFSKATGC 53 Query: 59 SKQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAG 118 ++ WL + +A+HDIGK D FQ + L ++ +KF H + Sbjct: 54 PREACDVWLAYLVAMHDIGKCDPNFQLLNDGYAAILREQG---MPFPSEPDKKFRHERSS 110 Query: 119 LYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPA 178 W + A S ++ HH Sbjct: 111 SEWVR-------------GLLEEAEWTRRSRNTISNSILLHHSR------------SSDG 145 Query: 179 SLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTN 238 L S + ++ +F + LL+G L+DW+ S Sbjct: 146 ELLSSPEIWDTIKRRLEEEIKRVFDYDNEPVDFSDNSEAGLLLSGLIVLSDWIASNEE-- 203 Query: 239 TFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGY-QPRQLQ 297 + + + ++ + A L + VS G+ + R +Q Sbjct: 204 -LMSCKGLECSVQDYALISRNCSERAITRLGFNVSVSWPENSSFSDVWPGGGFKELRPVQ 262 Query: 298 VLVDAL---PVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAML 354 + + P L +IEAP G GKTE + A +L+ + + ALPT AT+N M Sbjct: 263 RACVDIFQSEIKPRLLIIEAPMGEGKTEAGIYSAVQLLKEYDLSGMYVALPTAATSNQMF 322 Query: 355 TRMEASASHLFSSPNL--ILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNK 412 R A S + L HG S S +A E G + +W + +K Sbjct: 323 QRFNAFLDMHQSDKTVKARLVHGMSWLVDDASSFAVKA--ENGDGSDSYEMIEWF-KPSK 379 Query: 413 KVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQ 472 + + V TIDQ L+SVL VK F+R G+ VLI+DEVHAYD YM+ +L+ +L+ Sbjct: 380 RALIAPYSVGTIDQSLMSVLKVKFGFLRLFGLANKVLIIDEVHAYDAYMSTILKLLLQWC 439 Query: 473 ADVGGSVILLSATLPMKQKQKLLDTYGLHTDP---VENNSAYPLINWRGVNGAQRFDLLA 529 + + VI+LSATLP ++K +LL+ Y +D + + YPLI +G L+ Sbjct: 440 SCLQIPVIMLSATLPSEKKLELLEMYRTSSDEPGRFKPSMDYPLITIVNADGGIYEKLVP 499 Query: 530 -HPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLK 588 +++ R + + D++ L M + G +C+I N V AQ Y+R+K Sbjct: 500 GSSKRVNIRVTKHEGYLGDYDLIASLAM-----ERSVNGGCICIIMNTVKGAQSVYERIK 554 Query: 589 ELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNG----------KRNVGRILVATQVV 638 L+ + + LFHARFT R E E + F K R ILVATQVV Sbjct: 555 NLSTGEHQVMLFHARFTAGRRDEIEKNALRLFDKRSLLEEFDPDYQARPKRAILVATQVV 614 Query: 639 EQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEG--YGRH 696 EQSLD+DFD +IT+ P DLL QR GRLHRH RK RP G +P +LLPDGE +G Sbjct: 615 EQSLDLDFDEMITEIAPIDLLLQRAGRLHRHDRKNRPTG-PVPQLHVLLPDGEKASFGSS 673 Query: 697 EHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMD-EPEWVGNGMDKFES 755 E +Y V+ RT + E + + P + ++++Y + + D + Sbjct: 674 EKVYERY-VLLRTMDTLLERDLIEI--PSDIKTLVETVYRPYTEEISSASKTSSSDDLAA 730 Query: 756 AECEKRFKARKVLQWAEEYSLQDNDET-------------------ILAVTRDGEMSLPL 796 A + R + + A +Y + D + A TR G+ SL + Sbjct: 731 AYSDMRKRLHESEGLASKYLIADPNPKEFTINTYSLEEDEAGTKSYFKASTRLGDDSLRV 790 Query: 797 LPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVD----EDGLLW 852 + L V + L VN+P W ++ ++G W Sbjct: 791 VVLNDGEYSGILASKSVPP----VSVIREIMLKMVNIPRWWVNGYTPEQGYEPIQEGPAW 846 Query: 853 LEG----KQNLDGWVWQ---GNSIVITYTGDEGMT 880 L+G K W GN +I + G+ Sbjct: 847 LKGISILKTISGSWKGTDDSGNHAIIINDDELGLR 881 >UniRef50_C0VRV9 CRISPR-associated helicase Cas3 family protein protein n=1 Tax=Corynebacterium glucuronolyticum ATCC 51867 RepID=C0VRV9_9CORY Length = 945 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 221/958 (23%), Positives = 351/958 (36%), Gaps = 107/958 (11%) Query: 2 EPFKYICHYWGKSSKSLTK-GNDIHLLIYHCLDVAAVADCWWDQSVVLQNT--FCRNEML 58 I +W K+ + T D + H +D A VAD W+ + Q R + Sbjct: 18 SFEPQIRSFWAKTPEDSTDKSGDFLSVPQHLVDAACVADELWETWLSNQTRAFLRRETSM 77 Query: 59 SKQRVKAWLLFFIALHDIGKFDIRFQYKSAESW------LKLNPATPSLNGPSTQ-MCRK 111 ++Q +++ + F + HDIGK FQ + ++ A SL P T+ Sbjct: 78 TEQALRSLVTFVVGTHDIGKISCTFQSQLDSRGDMGMYSQRVEDAGFSLVAPKTESAFEY 137 Query: 112 FNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDK 171 + H +A L+ + HHG K Sbjct: 138 YPHSSASEAILFDWLLNHKV-------------SRPVGLSIASIAAAHHGVPSTKPGVAK 184 Query: 172 SRWEMPASLASYAAQDKQAREEWISVLEAL--FLTPAGLSINDIPPDCSSLLAGFCSLAD 229 + M A Y+A K A +E + + L F + + ++ GF + D Sbjct: 185 AARAM----AKYSAGWKAAHKEILDKIAELTGFNEVLQQITKPLTTPATQIITGFVIMCD 240 Query: 230 WLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDN 289 W+ S + + + +V Y + Sbjct: 241 WIASNQMAFPLNDTHSQEDRVRRGVDSIELSSPWSPQV-----RAPQDATYFSSAFNWPD 295 Query: 290 GYQPRQLQVLV---DALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPT 346 Y+ R +Q P L +IEA TG GKTE LA A L + ++FA PT Sbjct: 296 SYKIRPIQQAAVDIARAQKEPTLLIIEAATGEGKTEAGLAAAHVLAAHAGSQGIVFAAPT 355 Query: 347 QATANAMLTRMEASASHLFSSPNLI---LAHGNSRFNHLFQSIKSRAITEQGQEEAWVQC 403 +TA+ + R+ A + L H S N F ++ +I ++ E V Sbjct: 356 MSTADGLFNRVTDWAMRTTPESEVSTMFLGHSKSSLNRDFTKLRFGSIGDR-HEFGTVTA 414 Query: 404 CQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNG 463 +WL+ K+ L VCT+DQVL+ L +H +R LG V+I+DE H+YD YMN Sbjct: 415 TRWLA-GRKRGILSNFVVCTVDQVLMLALQARHLMLRHLGFSGKVVIIDEAHSYDVYMNE 473 Query: 464 LLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVE---NNSAYPLINWRGVN 520 L ++ A G SVI++SATLP Q+Q L Y + + +SAYPL+ Sbjct: 474 YLAVAIQWLARYGCSVIIMSATLPTSQRQALASAYAKGLNVEKATVRSSAYPLLTIVDKQ 533 Query: 521 GAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVA 580 G + + PE + + + G ++CN V A Sbjct: 534 GGREQPVETRPESKHYSVEKLAD--------DGEAVAGLLEDKLREGGVALVVCNTVRRA 585 Query: 581 QVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGR----ILVATQ 636 Q + +L +++L HA F + R KE + G + R GR ++VATQ Sbjct: 586 QEAFDKLSARFPG--EVELHHAAFMASHRARKEEELRRKLGPHAHRGNGRPDRLVVVATQ 643 Query: 637 VVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRK--YRPAGFEIPVATI-----LLPD 689 V EQSLD+D D L+T P DLL QR+GR++RH+R RP I P Sbjct: 644 VAEQSLDIDADLLVTDIAPMDLLIQRIGRVYRHNRPASDRPEPVSNAQVYIRGVETWDPV 703 Query: 690 GEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNG 749 E +YS + T ++ L P + + Y A W Sbjct: 704 PEFEAGTAAVYSPAILFATTAVAMQTLFARGFTSPSDVSELVQKTYSPAVTCPNGWEEQW 763 Query: 750 MDKFESAE---------------------CEKRFKARKVLQWAEEYSLQDNDETILAVTR 788 + + +R R + + S ++ + LA R Sbjct: 764 NEAAKQHAQAIDLSRARADSYRIPEPRSVANERSLQRLYERIGPKESAENEEAKGLAQVR 823 Query: 789 DGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYE-----ALALNRVNVPFTWKR---S 840 D ++ ++P V T G L D++ + Q E ALA + V +P R + Sbjct: 824 DSTPTVEVIPIVSTEYGYIPLALPDSPDIADDAQPERHTAFALAASSVRLPSRLTRYDTA 883 Query: 841 FSEVVDE---------DGLLWLEGKQNLDGWVWQGNSIV---ITYTGDEGMTRVIPAN 886 ++V+D+ L+G+ L + + Y D G+ V P Sbjct: 884 LNKVLDQLEMDTPVGWVQDYQLKGEVALRLNAEHEIELNGHLLRYDMDLGLLEVFPGE 941 >UniRef50_C7MTN1 CRISPR-associated helicase Cas3 n=1 Tax=Saccharomonospora viridis DSM 43017 RepID=C7MTN1_SACVD Length = 943 Score = 484 bits (1245), Expect = e-135, Method: Composition-based stats. Identities = 224/956 (23%), Positives = 350/956 (36%), Gaps = 106/956 (11%) Query: 5 KYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFC-RNEMLSKQRV 63 +++ WGKS+ G +LL+ H LD AAVA+C WD+ + + Sbjct: 8 RWLEALWGKSA--SRGGGRRNLLLAHMLDTAAVAECLWDRFLAPVTRRSVDEIAGGPGKG 65 Query: 64 KAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFN 123 + + + +HD GK FQ+ + + A + + + H AG Sbjct: 66 RPFFAWLCGVHDCGKAVPAFQFVDEDCARLVWDAGLQWDRHRV-ARQPWRHDKAGAALLR 124 Query: 124 QDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASY 183 + A P E V GHHG +D R ++ Sbjct: 125 R-------------CLPQAGWPVEQIDWVWPLVAGHHGTFP-GRDALYLRPAALRAVQGA 170 Query: 184 AAQDKQAREEWISVLEALF--LTPAGLSINDIPPDCSSL-LAGFCSLADWLGSWTTTNTF 240 +A+ +A+E + V T A ++ ++P L LAG +ADW+ S TT Sbjct: 171 SAEWLRAQEVLLRVFTEQLGYRTVAEVAPVEVPNRALQLQLAGLVVMADWIASNTTVF-- 228 Query: 241 LFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVL- 299 E + R A R L L G + G R Q + Sbjct: 229 ---EGLDELAKTGIEQSRRRADRAWRELGLRGGWGTRPVPGPEAFRDRFGQDMRPAQAMI 285 Query: 300 --VDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRM 357 V PGL V EAP G GKT+ AL A L + AD V +PTQAT + M + + Sbjct: 286 VDVARRMPDPGLMVFEAPMGEGKTKAALLAAEILAARFGADGVFVGMPTQATCDPMFSEV 345 Query: 358 EASAS--HLFSSPNLILAHGNSRFNHLFQSIKSR---------------------AITEQ 394 + + L HG R N ++++ A E Sbjct: 346 RGWVAATEPGLEGQVALLHGKRRLNKQWRALLEATGEAPMDDYCVPEDDAQYGMVATEED 405 Query: 395 GQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEV 454 + +W +K+ L V TIDQ+L + KH +R G+ V+I+DEV Sbjct: 406 SGAPDRLVPAEWF-LGSKRGLLCPFVVGTIDQLLFAATRTKHVMLRMAGLIGKVVILDEV 464 Query: 455 HAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTY------GLHTDPVENN 508 HA D YM+ LE L+ V+LLSATLP +Q+++L++ Y +PV Sbjct: 465 HACDVYMSQFLEEGLRWLGQARVPVVLLSATLPPEQRERLINAYVSAHVQPSTPEPVHPP 524 Query: 509 SAYPLINW--RGVNGAQRFDLLAHPEQLPPRFSIQPEPICL-------ADMLPDLTMLER 559 YP + G +G R ++ H P ++ + A + + + Sbjct: 525 RGYPSVTAVSVGSDGNVREPIVEHTGSWRPDQHVRVSVVDETPHQGRTAADDAENAVADL 584 Query: 560 MIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISN 619 + G +I N VD AQ Y+ L + L H R DR E+ + Sbjct: 585 IADRLREGGCALVIRNTVDRAQATYRMLARRFGRD-QVGLLHGRLHAGDRAERTEDNLGR 643 Query: 620 FGKNGKR----NVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRP 675 FG + + ILVAT + EQS DVD D L+T P DLL QR+GRLHRH+ +RP Sbjct: 644 FGPDPAKRVPPGTRWILVATSLAEQSFDVDADLLVTDLAPIDLLLQRIGRLHRHNLAHRP 703 Query: 676 AGFEIPVATIL-----LPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQW 730 + P + R ++ R+ + E G P + Sbjct: 704 TPLKTPEVVVTGLCRRGAKPPWLVRQSIAIYGEYLLLRSAALVIEAEGGQWRVPSQVPEL 763 Query: 731 LDSIYDDAEMDEP-EWVGNGMDKFESAECEKRFKARKVLQW-----------------AE 772 + ++YD + P WV + + + + + Sbjct: 764 VAAVYDGKPLSVPRAWVEAEHAAYVDYQRRQEERIANAEPFRLARRGEEHSGTLEGLHVG 823 Query: 773 EYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQ---VYEDLSHEQQYEALALN 829 + ++ A+ RDG S+ ++ + G L G+ V D++ E E LA Sbjct: 824 AHREGLGEQQFQALVRDGAPSVEVVLVHEGDRGYSTLSGRRLGVNGDVAAELLDEILAA- 882 Query: 830 RVNVPFTWKRSFSE----VVDEDGLLWLEGKQN--LDGWVWQGNSIVITYTGDEGM 879 V +P + S E + G WL + L +TY G+ Sbjct: 883 TVRLPQSLTTSAEENLRPLPGWHGHPWLRHTKALVLHNGRSDVLGKTVTYDSTLGL 938 >UniRef50_Q7N8H9 Similar to unknown protein YgcB of Escherichia coli n=1 Tax=Photorhabdus luminescens subsp. laumondii RepID=Q7N8H9_PHOLL Length = 905 Score = 482 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 245/927 (26%), Positives = 384/927 (41%), Gaps = 80/927 (8%) Query: 7 ICHYWGKSSKSLT-KGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKA 65 YWGK+ + L D HLL YHCLDVAAV L LS Q++++ Sbjct: 6 YFQYWGKAKRVLEIDSADYHLLPYHCLDVAAVGMQLLSLERSLTRDLASFLALSTQQLRS 65 Query: 66 WLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQD 125 + F +ALHDIGKF FQ + L+ + P R F H GLY++ Sbjct: 66 MVSFILALHDIGKFASAFQKLLPGLAVGLH----RPDCPKEYDGRYFCHDRIGLYFWENI 121 Query: 126 SLSEQSLGDFFSFFDAAPHP-----YESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASL 180 + L + + A H +++ +++ V GHHG + + Sbjct: 122 ---KAELLNRLVNIEGAEHREQREMFDTLMVFIDCVLGHHGRPIDKTGYRAIKHFTEPHN 178 Query: 181 ASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTF 240 + AA E E S AG LADW+GS + T+ Sbjct: 179 FNAAALFAHHLVELFQ-PEFPIEKLQSKEWRRRLEQVSWQFAGIAILADWIGSDSHYFTY 237 Query: 241 LFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLV 300 S L Y++ Q A + + L + G+ LQ Sbjct: 238 ------QSKPMPLTDYWKHAQAMAKKAVMAINLGRPPVVKPFISIQEYYGFAATPLQQWA 291 Query: 301 D--ALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRME 358 + + +P L ++E TG+GKTE ALA +L+ + AD F LPT A++NA+ +R+ Sbjct: 292 ESIPVDDSPQLFILEDVTGAGKTEAALALTHRLMQAKAADGFYFGLPTIASSNAIFSRIA 351 Query: 359 ASASHLF-----SSPNLILAHGNSRFNHLFQS-----IKSRAITEQGQEEAWVQCCQWLS 408 + S PN++LAHG N+ F + A QC QWL+ Sbjct: 352 QHYQQMLLTEDDSKPNIVLAHGTWGMNNQFHEPVLALGHPDRNDGKTDIAASAQCNQWLA 411 Query: 409 QSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAV 468 K+ L G+ IDQ L++VLP +++ +R G+ R VLIVDEVHA D +M LLE + Sbjct: 412 DPRKQALLAPAGIGAIDQALLAVLPRRYQSLRLFGLNRKVLIVDEVHAADEFMFNLLENL 471 Query: 469 LKAQADVGGSVILLSATLPMKQKQKLLDTY---GLHTDPVENNSAYPLINWRGVNGAQRF 525 L GGS +LL+ATL KQ+Q+L D + G + + + +PL +N Sbjct: 472 LALHLYQGGSAVLLTATLTFKQRQRLTDIWLNVGGLSSQLLQKNDFPLATKISLNA---- 527 Query: 526 DLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQ 585 +L EQ I + + + +E+++AA G V I N VD A YQ Sbjct: 528 -ILPVIEQPLSSRKDVSREIKVDFLNSVGSCVEKVLAAIVQGQCVVWIRNTVDDAIEAYQ 586 Query: 586 RLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKN--GKRNVGRILVATQVVEQSLD 643 L+ L LFH++F L R+E E+ V++ F KN G+ G+ L+ TQ+ + SLD Sbjct: 587 TLRSLLTEPERCLLFHSQFILQHRKEIEDHVLTIFDKNSHGELRRGKALITTQIFQASLD 646 Query: 644 VDFDWLITQHCPADLLFQRLGRLHRHHRKYRP-------AGFEIPVATILLPDGE----- 691 D D +I+ CP D L QR GRLHRH R P+ I P+ Sbjct: 647 TDADVMISDLCPIDDLIQRAGRLHRHTRDSDGIYRWGIKDSRPTPILFIHAPEWREQPGS 706 Query: 692 -----GYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWV 746 + +++Y + +W T + + +L ++ P RQ +D++Y A PE + Sbjct: 707 DWLSHNFRNTQYVYRSPVRLWLTMRILRKL--GAIRMPAETRQLIDAVYGHAYEQAPEVL 764 Query: 747 GNGMDKFESAECEKRFKARKVLQWAEEYSLQD--------NDETILAVTRDGEMSLPLLP 798 ++ E + KA+ + Y D +D I A D E ++ +L Sbjct: 765 KYQENELIDEERSQAAKAKSYWLQWQLYGYCDRSADHWYEDDSDINARYSDIE-TVEVLL 823 Query: 799 YVQTSSGKQLL---DGQVYEDLSHEQQYEALALNRV-NVPFTWKRSFSEVVDEDGLLWLE 854 + SG+ + + LS + +++ +P + + + Sbjct: 824 LKKGDSGQLVPWVNSAEFSVSLSTIKLSRNKYADKLAPIPTKLIPALNALQQ-----RYY 878 Query: 855 GKQNLDGWVWQGNSIVITYTGDEGMTR 881 + L W+ + TY+ G Sbjct: 879 QVRYLQPWLPDQDP-NFTYSSTIGFCE 904 >UniRef50_A1ARI0 CRISPR-associated helicase, Cas3 family n=3 Tax=Bacteria RepID=A1ARI0_PELPD Length = 879 Score = 482 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 227/900 (25%), Positives = 360/900 (40%), Gaps = 100/900 (11%) Query: 5 KYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSV-VLQNTFCRNEMLSKQRV 63 K + W K+ + H LI+H LDVAA AD + + L + Sbjct: 3 KKLSLIWAKT--GMNGDGTWHPLIFHMLDVAACADAILAREPDSTRIRIAAILGLEWEIA 60 Query: 64 KAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFN 123 +AW+L +A HD+GK FQ K +P+ + NH Sbjct: 61 RAWILLVVACHDLGKACPGFQCKWENMTGIDTGRSPNTD---------INHAYVSQIALT 111 Query: 124 QDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASY 183 + L P E +AV HHG + + + A Sbjct: 112 EILL-------------EKGWPDELAELVADAVGCHHG---NRASSIRLNYLSGDRRAIG 155 Query: 184 AAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFN 243 QAR + + +F+ + LL+G S ADW+GS F Sbjct: 156 KGDWTQARLGLVDAVLNVFMPVQNPVKQTLSGPDFMLLSGLTSFADWIGSNEEWFPF--- 212 Query: 244 EDAPSDINALRTYFQDRQQDASRVLELSGL-VSNKRCYEGVHALLDNGYQPRQLQVLVDA 302 + L +FQ R+ +A L+ G E + PR LQ V Sbjct: 213 -GGAEECGDLPGWFQKRRHNADLALDAIGWEPRTPLSSEPKSFQQVFDFVPRPLQQAVAD 271 Query: 303 LPVA---PGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEA 359 + V P + ++EAP G GKTE A +L + + ALPT+AT NAM R Sbjct: 272 VLVGLSEPAIILVEAPMGEGKTEAAFFAHLELQRRFGHRGLYVALPTKATGNAMFKRTIK 331 Query: 360 SASHLFS--SPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLG 417 + +L L HG + N FQ+++ I + ++ +W + + K+ L Sbjct: 332 FIRSQGTHRKLDLQLLHGGTLLNDTFQNLRLSGI-HDPETGGDIRAGEWFT-NKKRALLS 389 Query: 418 QIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGG 477 + GV T+DQ L+ +LPV+H F+R G+ V++ DE+HAYD Y LL +L+ +G Sbjct: 390 EYGVGTVDQALLPILPVRHNFVRLWGLANRVVVFDEIHAYDAYTGTLLIHLLRWLLALGS 449 Query: 478 SVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPR 537 SV+LLSATLP ++KL D E + G Q +L R Sbjct: 450 SVVLLSATLPPSIRRKLADAVSADLPAQETQYPRLSVFCPGKEVNQIHFEADPGRRLTLR 509 Query: 538 FSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKE-------- 589 P + ++ ++ G + N V AQ Y+ E Sbjct: 510 LVGLPSDLP--------SIHNALVVHLAGGGMGLALLNTVQRAQDLYRLFSEGEAMEYEG 561 Query: 590 -----LNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDV 644 + ++ LFHARF ++ R+++E++V+ FG++G R+ +IL+ATQV EQSLD+ Sbjct: 562 HRVGKRLSDGTEVFLFHARFPVDRRQKREDQVLKAFGQSGCRDERKILIATQVAEQSLDL 621 Query: 645 DFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEG---YGRHEHIYS 701 DFD + T P DL+ QR GRL RH R +RP + + L D Sbjct: 622 DFDLIATDLAPIDLVLQRAGRLWRHARSFRPVEEPVLLVAGLAGDEPPSFEKPLWWGSVY 681 Query: 702 NVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKR 761 ++ T + ++ PD + ++Y++ +D PE++ M+ AE + Sbjct: 682 REDLLLSTWCLL--HTKQNITLPDEIDSLVQAVYEEQ-VDIPEFLAERMNCAIFAEGKAI 738 Query: 762 FKARKV----------LQWAE-EYSLQDNDE-----TILAVTRDGEMSLPLLPYVQTSSG 805 + ++ W E ++ D DE +++A TR GE S+ +P Sbjct: 739 SERQQANMAIIGFPDDASWKEVKFEKADEDEPGLHRSLVAQTRLGEPSVMAIPIFSADEF 798 Query: 806 KQLLDGQVYEDLSHEQQYEAL---------ALNRVNVPFTWKRS------FSEVVDEDGL 850 ++ DLS + A+ L + VP WK+S F V+D +G Sbjct: 799 DPAK--ELTFDLSKDFFLRAVNLSRKGVVKKLQKRGVPEGWKKSSLLRNCFPLVLDAEGR 856 >UniRef50_Q1R120 CRISPR-associated helicase Cas3, protein n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1R120_CHRSD Length = 897 Score = 482 bits (1239), Expect = e-134, Method: Composition-based stats. Identities = 235/914 (25%), Positives = 378/914 (41%), Gaps = 75/914 (8%) Query: 6 YICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKA 65 + Y GK+ G+ HLL +H LDVAAV L + + ++ Sbjct: 10 FYHRYAGKA-MPGQSGDSCHLLAWHSLDVAAVGWHLLAPERPLTQQLALRLGIETEPLRR 68 Query: 66 WLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQD 125 L+F + LHD+GKF FQ + + H G+ ++ Sbjct: 69 LLVFLLGLHDLGKFSRAFQEVLKLTLEGM--------AKPLGKPYLERHDRLGVLLWDAW 120 Query: 126 SLSEQSLGDFFSFFDAAPHPYESWFPWVEAVT---GHHGFILHSQDQDKSRWEMPASLAS 182 + G D + P + GHHG + + + + + Sbjct: 121 WRQWRREGVLHWPPDDQTPARKLLEPMASLMAPFFGHHGRPVVTGRLNVEAFYGSDAQVD 180 Query: 183 YAAQDKQAREEWISVLEALF--LTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTF 240 + +W V+E + D+ S +AG+ +L+DWLGS + Sbjct: 181 DVTAARDFIADWAKVVEPHWPVELLLDEEWLDVFRTLSWTIAGWATLSDWLGSHREYFPY 240 Query: 241 LFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRC--YEGVHALLDNGYQPRQLQV 298 +L Y+ A VL+ +G ++ YE + P LQ Sbjct: 241 C------ERAMSLSEYWSRALGQAESVLQATGFAASPDPVPYESLAQWFSADITPTPLQQ 294 Query: 299 LVDA--LPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTR 356 +A L P L ++E TG+GKTE A A +L+ + + FALPT AT+NAM R Sbjct: 295 KAEAISLEAGPQLFILEDVTGAGKTEAACILAQRLLAAGHGEGLYFALPTMATSNAMYAR 354 Query: 357 MEASASHLFSSPNL---ILAHGNSRFNHLFQSIKSRAITEQGQ-----EEAWVQCCQWLS 408 + +S+ + +LAHG + N F+ A A QC +WL+ Sbjct: 355 LGDLHYRFYSAESRPSFVLAHGARQLNEDFERAVMAAQPGDNDYAAIDASASTQCSRWLA 414 Query: 409 QSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAV 468 SNKK L +GV TIDQ L+ +LP +H+ +R LG+ R VLIVDEVHA+D YM LL + Sbjct: 415 DSNKKALLADVGVGTIDQALMGLLPFRHQSLRLLGLARKVLIVDEVHAFDHYMQTLLHQL 474 Query: 469 LKAQADVGGSVILLSATLPMKQKQKLLDTYGLH---TDPVENNSAYPLINWRGVNGAQRF 525 L A GGS ILL+ATLP +Q L++ + +++ YPL+ G + Sbjct: 475 LAHHARQGGSAILLTATLPFAMRQALVNAWQQGLGYESAALSSTDYPLLTHSGQGAHRET 534 Query: 526 DLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQ 585 L PE + + + + + + + AG + + N VD A +Q Sbjct: 535 PLATRPEVMRR--------VEIGWLTQEEDAIAEVSRGIEAGDCIVWVRNTVDDAIRAWQ 586 Query: 586 RLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKR--NVGRILVATQVVEQSLD 643 ++++++ LFHARF + DRR E+ VI FGK G++L+ TQV ++SLD Sbjct: 587 AIRDIHSDPERCLLFHARFAMVDRRRIESDVIERFGKTSTPSIRRGQVLITTQVFQESLD 646 Query: 644 VDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHE------ 697 D D +I+ P DLL QR GRL RH R R P +L P+ E + + Sbjct: 647 CDADRMISDIAPIDLLIQRAGRLQRHQRGERQP----PRLLVLAPEWEESPKADWLSRAH 702 Query: 698 ----HIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWV-GNGMDK 752 +Y + ++W TQ+ + EL ++ PDA R+ ++ +Y + + PE + +++ Sbjct: 703 RGTQAVYQDTSLIWLTQRVLREL--GAIEMPDAARELIERVYACSIDEIPEALEQARLER 760 Query: 753 FESAECEKRFKARKVLQWAEEYSLQDN----DETILAVTRDGEMSL--PLLPYVQTSSGK 806 + L + Y L ++ E TR + S +L Q S Sbjct: 761 SGMNKMVGSMATHNTLDLQDGYRLNEDFDQWQEERDVGTRLSDESSVNVVLLKRQDDSLV 820 Query: 807 QLLDGQVYED-LSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQ 865 DG+ + D LS + E+ +P S+ + + L W+ + Sbjct: 821 LWADGEHHADMLSQCRLRESQVRKLAELPERDAESWEALQERYKALRFTR-----PWLPE 875 Query: 866 GNSIVITYTGDEGM 879 + Y G+ Sbjct: 876 EDD-DCRYDSQWGV 888 >UniRef50_D1YEE0 CRISPR-associated helicase Cas3 n=1 Tax=Propionibacterium acnes J139 RepID=D1YEE0_PROAC Length = 931 Score = 480 bits (1235), Expect = e-134, Method: Composition-based stats. Identities = 211/923 (22%), Positives = 332/923 (35%), Gaps = 96/923 (10%) Query: 4 FKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRV 63 WGK+++ D ++ H D A V W + + + ++ Sbjct: 6 SPPAQSCWGKTNEV----GDWLPVVQHLEDAAGVMAEVWRLQPQSIRSLLADTLGGERAA 61 Query: 64 KAWLLFFIALHDIGKFDIRFQYKSAESW------LKLNPATPSLNGPSTQMCRKFNHGAA 117 + ++ F +HD+GK F +K+ L + R HGA Sbjct: 62 QTFVCFLAGIHDVGKISADFAFKARLPRTNGTSTSYLCDQMERQGFVIGKPDRPIPHGAL 121 Query: 118 GLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMP 177 G LS + AP V GHHG S D +K Sbjct: 122 GQTHVTSWLLSR---------YPDAPRARRCARNIASIVGGHHGTNPTSADVEKVEL--- 169 Query: 178 ASLASYAAQDKQAREEWISVLEALFLTPAGLSI---NDIPPDCSSLLAGFCSLADWLGSW 234 SLA K R+E + + A L + I + + DW+ S Sbjct: 170 -SLAREEHLWKATRDEVLDTMAAHTGADEFLPTWMGSPISIQTQIVCEALVIVTDWIASS 228 Query: 235 TTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPR 294 T + F P + + + + + G P Sbjct: 229 ETLFPYDFATPTPDRVRR-----AVARLQLPHPWQPAPCPGSVDELFGTSFPSLTHGAPN 283 Query: 295 QLQVLVDALPV---APGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATAN 351 +Q + + PGL IEAP G GKTE AL A L ++ + F LPT AT+N Sbjct: 284 AMQRVAVEVADTMPEPGLLAIEAPMGHGKTEAALMCAQVLAERFGLGGIFFGLPTMATSN 343 Query: 352 AMLTRMEASASHLFSSP--NLILAHGNSRFNHLFQSIKSR-------AITEQGQEEAWVQ 402 M R+ + + ++ LAH + N +Q + Q EA Sbjct: 344 PMFGRVREWLDAVPAKDPSSISLAHSKAGLNEEYQQLMPWNATMAVYDEGAGTQREASAI 403 Query: 403 CCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMN 462 +W K+ L V TIDQ L + L KH +R LG+ V+I+DEVHA D YM Sbjct: 404 VHEWF-LGRKRAILADHVVGTIDQALFTGLKAKHVVLRHLGLASKVVIIDEVHAADVYMR 462 Query: 463 GLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHT------DPVENNSAYPLINW 516 L+ VL+ VIL+SATLP Q+ +L Y + YP++ Sbjct: 463 EYLKVVLEWLGAYRTPVILMSATLPPAQRHELALAYAKGRHGRNAQVVLTTTDEYPIVTT 522 Query: 517 RGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNL 576 AQ+ + P + Q + D L ++ + + G + +I + Sbjct: 523 ISDGVAQQGTSTSAPGR-------QVVVRSMGDSLD--ELINLIEDKMSDGGCIGIIRDT 573 Query: 577 VDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGK-RNVGRILVAT 635 V AQ + L ++ L H+RF R +E ++ G++G+ R ++V T Sbjct: 574 VARAQDTFDALDSRL--DCEVVLVHSRFLAPQRARREADLVRRLGRSGESRPDRLVVVGT 631 Query: 636 QVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATI-----LLPDG 690 QV+EQSLDVDFD LI+ P DLL QR+GRLHRH R RP + L DG Sbjct: 632 QVLEQSLDVDFDLLISDIAPIDLLLQRIGRLHRHDR-QRPVPLREATCLVTGVDAWLEDG 690 Query: 691 EGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGM 750 + R + + RT ++ L+ + P + + Y++ W G Sbjct: 691 PQFSRGIELVYEPDFLLRTAAILDGLSSGIVNVPQDIPRLVRIAYEETFTWPDAWASRGE 750 Query: 751 DKFESAECEKRFKARKVLQW--------------AEEYSLQDND-ETILAVTRDGEMSLP 795 D + + + + + + D + A RD E S+ Sbjct: 751 DAALESRSRHKAATSRAMTYRLSDPFGASSLMKGITDMKTVDPENTRGHASVRDSEDSIE 810 Query: 796 LLPYVQTSS-GKQLLDGQVYEDLSHE--------QQYEALALNRVNVPFTWKRSFSEVVD 846 ++ QT+S G L+DG + A+A V +P + + D Sbjct: 811 VIVVQQTNSGGYHLMDGIGEFSGADLPLFGAPGGDLARAVASCTVTLPRSLSNPW----D 866 Query: 847 EDGLLWLEGKQNLDGWVWQGNSI 869 D + +D WQ + Sbjct: 867 IDQTITELENAPIDLSSWQSSPW 889 >UniRef50_B1VIY4 CRISPR-associated protein n=4 Tax=Corynebacterium RepID=B1VIY4_CORU7 Length = 941 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 212/916 (23%), Positives = 340/916 (37%), Gaps = 98/916 (10%) Query: 3 PFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVV--LQNTFCRNEMLSK 60 + W KS + + L H DVAA A +D V +N + Sbjct: 31 VSPQLAALWAKSGE----EGEYLNLPQHLADVAATAGEVFDIWVADATKNDLSGELGIDV 86 Query: 61 QRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKL-------NPATPSLNGPSTQMCRKFN 113 ++ + + LHD GK + FQ + + P G Sbjct: 87 GELRRLVTWLAGLHDSGKASVNFQRLLEKKPGYDYLLNAVSDAGLPLDTGYREADLPAMP 146 Query: 114 HGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSR 173 H A + SE S+ V HHG +K R Sbjct: 147 HSVASAAMLGEWLESETSVSSIMR------------RRLRSIVGAHHGIPAD----EKLR 190 Query: 174 WEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPP-DCSSLLAGFCSLADWLG 232 ++ +L Y + +E + L LS P LL G ADW+ Sbjct: 191 RDIEDALKDYPQAWRAVHKELLDGFAELTEIKPVLSKMSTPRAPELQLLTGIVVFADWIA 250 Query: 233 SWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQ 292 S + + D + + + + + + Sbjct: 251 SNVDAFPLALQPMPQRLESG------MAKTDITLPWKPTEPAEDVDEFFRRSFSWPEEFC 304 Query: 293 PRQLQV---LVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQAT 349 R +Q P L ++EA TG GKTE ALA A +L + V FA PT AT Sbjct: 305 ARSVQRTMVEAARATEGPALYILEAETGVGKTEAALAAAHQLGAEDGVQGVYFAAPTMAT 364 Query: 350 ANAMLTRMEASASHLFSS--PNLILAHGNSRFNHLFQSIKSRAITEQ--GQEEAWVQCCQ 405 AN +L R A +L LAH ++ ++++K + I E G V Q Sbjct: 365 ANGLLDRTINWAQGTTGDTVASLYLAHSKNQLAEPYRALKYKGIAEDEAGGAAGKVVASQ 424 Query: 406 WLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLL 465 W+S ++ L I V T+DQVL+ L ++ +R L + V+I DEVH+YD Y + L Sbjct: 425 WMS-GRRRGLLSNIVVGTVDQVLMLALVQRYSMLRHLALAGKVIIFDEVHSYDAYTSDYL 483 Query: 466 EAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRF 525 + L A G SVI+++ATLP +Q+++L + Y VE +SAYP I + + Sbjct: 484 KTTLSWLAYYGASVIVMTATLPTRQREELAEAYSGEPLRVE-SSAYPRITVVTEEKDEVW 542 Query: 526 DLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQ 585 + P L + + + + + + G +ICN + AQ YQ Sbjct: 543 EPEPSPRNLDASLQVIGDEL--------VELRALLDQLLAEGGCALVICNTIARAQQAYQ 594 Query: 586 RLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGR----ILVATQVVEQS 641 L E +++L HA F +R ++E+R+ G +R GR I+VATQV EQS Sbjct: 595 ELAEAYPD--EVELHHAGFMAWERSQREDRLREELGPAARRGAGRPARKIVVATQVAEQS 652 Query: 642 LDVDFDWLITQHCPADLLFQRLGRLHRHHRK--YRPAGFEIPVATILLPDGEG----YGR 695 LD+D D LIT P DL+ QR+GR+HRH R RPA P I + Sbjct: 653 LDIDADVLITDLAPMDLVIQRIGRIHRHQRPTSDRPAALREPQVFIRGVVDRDGVPEIDK 712 Query: 696 HEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFES 755 + +++ T H+ E PD ++++Y + EW + Sbjct: 713 GAQAIYDPKILLATLLHLPER----FRRPDDTAPLVEAVYGNIHAIPQEWAELWAEAERE 768 Query: 756 AECEKRF-----------KARKVLQWAEEYSLQD-------NDETILAVTRDGEMSLPLL 797 + + A ++ + + ++E A RD E ++ ++ Sbjct: 769 SRSREARAHARSATYRVPAASDAKEFESLFRGLNAAAQSLGDEERGAAQVRDSEPTVEVI 828 Query: 798 PYVQTSSGKQLLDGQ--------VYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDG 849 P + T G + L + + QQ LA++ V +P R + D Sbjct: 829 PVMITDYGYRPLTPRSAEHSVEILSGVTPEFQQAWDLAMSTVRLPTRMTRWDEDF---DA 885 Query: 850 LLWLEGKQNLDGWVWQ 865 ++ ++ W Sbjct: 886 VVTQLEEETPPEWQEH 901 >UniRef50_C7JIG3 CRISPR-associated helicase Cas3 n=8 Tax=Acetobacter pasteurianus RepID=C7JIG3_ACEP3 Length = 904 Score = 478 bits (1230), Expect = e-133, Method: Composition-based stats. Identities = 251/865 (29%), Positives = 361/865 (41%), Gaps = 91/865 (10%) Query: 10 YWGKSSKSLTKGN---DIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAW 66 +WGK+ +H LI H LDVAAVA + + L Sbjct: 13 FWGKARPVAEAEEVISSMHPLIAHMLDVAAVAILLPE---------SKCLGLD----CRQ 59 Query: 67 LLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDS 126 L IALHDIGK FQ K E W + G H A GL+ + Sbjct: 60 LGMLIALHDIGKLTPAFQSKVPECWPEQ------AFGRCPDEVVMSRHDADGLFLLDHIC 113 Query: 127 LSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQ 186 +Q F + D AV GHHG + D++K + LA Y Sbjct: 114 -KDQLAPLFGTNADGLDWSPTDKKQLWRAVAGHHGQPVS-SDENKFQNADLKLLAPY--- 168 Query: 187 DKQAREEWISVLEALFLTPAGLSINDIPP--DCSSLLAGFCSLADWLGSWTTTNTFLFNE 244 + + VL +F P S + + LAG ADW+GS ++ E Sbjct: 169 ----AHKLVRVLLDIFRPPPIPSYSFLEDLLQLEWRLAGLTVQADWIGSRQEWFPYVRPE 224 Query: 245 DAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDAL- 303 D + R Q A LS +N ++G+ L + +Q L++ Sbjct: 225 DVADASGYFWNHALHRAQAAIASAGLSP--ANISPFQGMARLFPHICNSSPIQALLEVAS 282 Query: 304 -PVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASAS 362 P P L VIE TGSGKTE AL A +L+ A + ALPT ATANAM R+ + Sbjct: 283 FPADPTLIVIEDMTGSGKTEAALVAAHRLMASGHASGLFVALPTMATANAMFDRLAIAYR 342 Query: 363 HLF---SSPNLILAHGNSRFNHLFQSIKSRAITEQG-------QEEAWVQCCQWLSQSNK 412 LF S P+L LAHG + + F S+ + + A V C WL ++ Sbjct: 343 SLFQPSSHPSLALAHGRALLDERFVSVLAPDDALDNTTVKKGRDDAAEVCCSAWLGSESR 402 Query: 413 KVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQ 472 + L Q+GV TIDQ L++VLPV+ +R G+ VL+VDE HAYD YM + A+L+ Sbjct: 403 RALLAQVGVGTIDQALMAVLPVRFATVRQAGLAGKVLLVDECHAYDPYMQEEMVALLRFH 462 Query: 473 ADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENN----SAYPLINWRGVNGAQRFDLL 528 A +GGS ILLSATL +QKL+ + E+ AYPL+ G +GA+ Sbjct: 463 AAMGGSAILLSATLTKSVRQKLVTAFREGLRQKESVGLSCMAYPLVTLVGRDGAEELPCA 522 Query: 529 AHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLK 588 P I + M +++ + AA GA V + N VD + L+ Sbjct: 523 PRPGLARN--------IAVRQMSDASSIMAYVSDAAAQGAAVAWVRNTVDDVITSAKALE 574 Query: 589 ELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNG-KRNVGRILVATQVVEQSLDVDFD 647 +D+ +FHARF + DR E V++ FGKNG + R+L+A+QV+EQSLD+DFD Sbjct: 575 A---EGLDVMVFHARFAMVDRLAIEREVLARFGKNGTTADRSRVLIASQVIEQSLDLDFD 631 Query: 648 WLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVAT----ILLPDGEGY----GRHEHI 699 L T P DL+ QR GRL RH R RP + + PD + + Sbjct: 632 VLCTDLAPMDLIIQRAGRLRRHERAQRPVDCDEICIFSPNPVADPDPQWISRVLPGTAAV 691 Query: 700 YSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECE 759 Y + ++WRT + + + PD R+ ++ D P + D+ E Sbjct: 692 YRDPALLWRTAKVL--QCKGQIRSPDMIRELIEEA--ADTSDVPNGLMMASDEAEGKGRA 747 Query: 760 KRFKA-RKVLQWAEEYSLQDN--DETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYED 816 R A R +L + Y+ + + TR E + G+ Sbjct: 748 ARGAAIRNILNYDAGYTPDSALWEREVRISTRLEERPYVTVRLGVMKDGQVWP------- 800 Query: 817 LSHEQQYEALALNRVNVPFTWKRSF 841 + AL + VP KR++ Sbjct: 801 ------WAALQQTSLAVPHERKRAW 819 >UniRef50_Q2JH31 CRISPR-associated helicase Cas3, core n=2 Tax=Frankia RepID=Q2JH31_FRASC Length = 962 Score = 477 bits (1228), Expect = e-133, Method: Composition-based stats. Identities = 226/958 (23%), Positives = 353/958 (36%), Gaps = 111/958 (11%) Query: 5 KYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVK 64 ++ WGKS++ G +HLL+ H LD AAV + WD+ + R + S R + Sbjct: 16 EFFGMIWGKSAEKA--GGSMHLLLGHLLDTAAVGELVWDRFLASTIR-DRLDDCSDGRGR 72 Query: 65 AWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQ 124 + LHD+GK FQ K ++ A G + Q R+++H AG + Sbjct: 73 SLFALLCGLHDVGKATPAFQMKDEGLAQRVRAAGLGWRGVTPQQGRQWHHARAGAVIVRK 132 Query: 125 DSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYA 184 + V GHHG I D+ R ++ Sbjct: 133 -------------YLPQVGWSRPGCDWVWPLVAGHHGLIP-----DRGRLVHKPAVHGAG 174 Query: 185 AQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSL-LAGFCSLADWLGSWTTTNTFLFN 243 R V L + A S P L L+G +ADW+ S L + Sbjct: 175 PWLDVQRAFVDRVAGDLNVDLASFSELRTPSRGGQLALSGMIIMADWVASDKEHFGGLSD 234 Query: 244 EDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHA---LLDNGYQPRQLQVLV 300 S + ++R Q A L L G + R G + G R Q Sbjct: 235 LAEISMKGS-----RERAQRAWAQLGLRGGWRSDRPAPGNQSDLVHHRFGKPARPAQRAA 289 Query: 301 DALPV---APGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRM 357 PGL ++EAP G GKTE ALA A L + AD V +PTQAT++ M +R+ Sbjct: 290 VQAVREMPGPGLLILEAPMGEGKTEAALAAAEVLAGKVGADGVFVGMPTQATSDPMFSRV 349 Query: 358 EASASHLFSSPNLILAHGNSRFNHLFQSIKSR------------------------AITE 393 + + + L HG +RFN + +++S+ Sbjct: 350 RGWLTAVDPEVPIGLLHGRARFNKEWAALRSQVRFVDVHDDLDEYGMADDFGTGTSGPGR 409 Query: 394 QGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDE 453 + A +K+ L + V T+D +L + KH +R G+ V+I+DE Sbjct: 410 RDAPLAGAAAAAEWFFGSKRGLLAAVTVGTVDHLLQAATRTKHVMLRHAGLAGRVVILDE 469 Query: 454 VHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHT--------DPV 505 VHAYD YM L L+ AD G VI+LSATLP + +L Y + Sbjct: 470 VHAYDVYMAQFLFEALRWLADTGVPVIVLSATLPPVLRAQLAGAYLQGALQRPDVDLADL 529 Query: 506 ENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAAN 565 + YP + + + + E + +++ + A + Sbjct: 530 PRPTGYPSTTAVYMADGKPRFSVTSQSPWRESVPVAVEILAEPTDFAPVSIAAAVSAEVS 589 Query: 566 AGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGK 625 G ++CN V AQV Y L+ D+ L H+RFT +R + V+ G G+ Sbjct: 590 EGGCALVVCNTVQRAQVVYAELRTTFGD--DVVLLHSRFTAAERASRTEDVVDKLGPPGR 647 Query: 626 -----RNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRK--YRPAGF 678 R ++VATQV EQS DVD D L+T P DLL QR+GRLHRH R RPA Sbjct: 648 ENAQDRPARLVVVATQVAEQSFDVDVDILVTDLAPIDLLLQRVGRLHRHDRPTGQRPARL 707 Query: 679 EIPVATI---LLPDGE---GYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLD 732 P + LPDG +Y + ++ E G P + Sbjct: 708 RDPKVIVSGLRLPDGAVPLWPAGSRAVYGDHLLLRSAALVAEAATGGGWSIPADVPGLVA 767 Query: 733 SIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQW-----------------AEEYS 775 Y D + W + + E ++R + + + + Sbjct: 768 LGYGDEPLGPARWADAAAEARQEWEAKERRRRVNATGFLLSGEDGLGLTTLEGLHDKATA 827 Query: 776 LQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDL-----SHEQQYEALALNR 830 + +E + AV RD + S+ ++ + +G L G+ + S + E + Sbjct: 828 PLETEERLTAVVRDSDESVEVVLVRRGPAGYLTLAGRSLGHIGEVAVSDDAVLEEVVGAT 887 Query: 831 VNVPFTWK------RSFSEVVDEDGLLWLEGKQN---LDGWVWQGNSIVITYTGDEGM 879 + +P + + + DG WL + D +TY G+ Sbjct: 888 IRLPANKEITAAAHAELTPLAGWDGDSWLRRTRALILDDRMSAILGGRHLTYDNKLGL 945 >UniRef50_Q03C64 CRISPR-associated helicase n=3 Tax=cellular organisms RepID=Q03C64_LACC3 Length = 922 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 211/941 (22%), Positives = 353/941 (37%), Gaps = 93/941 (9%) Query: 3 PFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQR 62 + W K +++ L+ H +D + V+ ++Q + Q + Sbjct: 2 LSERAKSLWAK-KRTVDGQPKWLPLVAHLVDASNVSRMLFNQWLSDQQRVFLTVDQDVDK 60 Query: 63 VKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWF 122 + F +HDIGK FQ K + + A T G + Sbjct: 61 TLKLVKFVGFIHDIGKATPAFQTKKSYVEDAILDADLIEKAVRTGFV-----GLDSTHLP 115 Query: 123 NQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQ-DKSRWEMPASLA 181 + G+ A P V GHHG L Q D + A Sbjct: 116 SASKSPHAKAGEAILERLAGPDS------IGAIVGGHHGRPLTRAPQRDIGDYTSNYWQA 169 Query: 182 SYAAQDKQAREEWISVLEALFLTPAGLS----INDIPPDCSSLLAGFCSLADWLGSWTTT 237 +Q ++ L L +G + I + LL G +ADWL S Sbjct: 170 EKDPVVQQRWQDVQLELLNYGLEISGFKSVAELPMISQPQAVLLEGLLIMADWLSSSEAL 229 Query: 238 NTFLFNEDAPS---DINALRTYFQDRQQDASRVLELS-GLVSNKRCYEGVHALLDNGYQP 293 P D R Q A + + + L G+ Sbjct: 230 EDDPGQPLFPLISLDQGLDDLNLTARYQQAWTRWQRTDEWPTAPVPLASDPYKLRWGFSA 289 Query: 294 RQLQVLVDALPV---APGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATA 350 R +Q V + PG+ +IEAP G GKTE AL A +L + + F LPTQATA Sbjct: 290 RPVQRKVAEMIDQAEDPGMVIIEAPMGMGKTEAALVAAEQLAYKGKETGLFFGLPTQATA 349 Query: 351 NAMLTRMEASASHLFSSP----NLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQW 406 NAM R++ L + ++ L H + FN + + + E +A V +W Sbjct: 350 NAMFDRVDEWLRRLAADNGETYSIKLMHSKAEFNPNYLKV---PVAEDVDGDASVVVNRW 406 Query: 407 LSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLE 466 S KK L + + TID +L L KH ++ LG+ + V+I+DEVHAYD++M+ L Sbjct: 407 FS--GKKSILDEFSIGTIDNLLQMDLKQKHLALKHLGLSKKVVIIDEVHAYDSFMDQHLF 464 Query: 467 AVLKAQADVGGSVILLSATLPMKQKQKLLDTY---------------GLHTDPVENNSAY 511 L+ +++LSATLP + +LL+ Y + +++ AY Sbjct: 465 RTLEWLGTYHVPIVVLSATLPKATRNRLLEAYFHGKFGQKLSKGADLSRVSSDWQDSEAY 524 Query: 512 PLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVC 571 PL++ +R + ++H + + + ++ L + ER++ A G Sbjct: 525 PLVSMLD---GRRLNQVSHFDGKTNQSQLSIHVERMSGDLT--ALGERVLDAIADGGVAG 579 Query: 572 LICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRI 631 +I N + AQ L +V + H+ F R + E + + GK KR + Sbjct: 580 VIVNTIKRAQALADALA----GKVPFIVLHSAFVAAQRAQLETELQNAIGKGSKRPAKLV 635 Query: 632 LVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGE 691 ++ TQV+EQSLD+DFD L T P DLL QR GRLHRH RP P + +G Sbjct: 636 VIGTQVLEQSLDIDFDILFTDIAPMDLLLQRAGRLHRHA-IARPRALTGPRLVVTGIEGL 694 Query: 692 G-YGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGM 750 G + ++ +T+ + A+L PD + + + YD + Sbjct: 695 GEFEEGSAAIYGQYLLMKTEALLP----ATLRLPDDISRLVQTTYDLQRDPPLPGIEEER 750 Query: 751 DKFESAECEKRFKARKVLQWAEEYS---------------LQDNDETILAVTRDGEMSLP 795 +FE+ +K KA+ + +++ A RD + SL Sbjct: 751 TRFETKIAQKAQKAQAFQIAPPSRRRSRTLHGWLDNDQPGVDVSEQRAEAAVRDIDESLE 810 Query: 796 LLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRS----FSEVVDEDGLL 851 ++ T G L+DG+V + ++ + +A + +P + + + E L Sbjct: 811 VILLQHTKHGDALIDGRVVDSFQLDRMAKVIAQQTIRLPRVFTFNIDATIKALEQETARL 870 Query: 852 WLEGKQN-----------LDGWVWQGNSIVITYTGDEGMTR 881 + +QN + + Y+ +G+ Sbjct: 871 YPGWQQNKWLRGALALPLDEELNGSLMDYQLHYSLKDGLRY 911 >UniRef50_C7QEM7 CRISPR-associated protein, Cse1 family n=12 Tax=Actinomycetales RepID=C7QEM7_CATAD Length = 1540 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 230/968 (23%), Positives = 344/968 (35%), Gaps = 119/968 (12%) Query: 11 WGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQ--RVKAWLL 68 W KS LI H D AA+A+ WDQ + E L + + + Sbjct: 30 WAKSDP---DSGQSLSLIRHLADSAAIAEHLWDQWLPDHVKSLIAEGLPEGLVDGRTLAV 86 Query: 69 FFIALHDIGKFDIRFQYKSAESWLKLNPATPSL--NGPSTQMCRKFNHGAAGLYWFNQDS 126 + HDIGK F + + + R HG AG + Sbjct: 87 WLAGTHDIGKLTPAFACQCEPLAQAMRECGLDMPTRTQFGDDRRVAPHGLAGQVLLREWL 146 Query: 127 LSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFIL-----HSQDQDKSRWEMPASLA 181 + S + GHHG H D P + Sbjct: 147 MERH------------GWSGRSADAFTVIAGGHHGVPPSYSQLHDLDAYPELLRTPGASE 194 Query: 182 SYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFL 241 + + +V+ A + LL G +ADW+ S T + Sbjct: 195 GIWKSSQHELLDACAVMTGASSRLAHWRGLRLSQQAQVLLTGLVIVADWIASNTDLFPYP 254 Query: 242 FNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGV------HALLDNGYQPRQ 295 + I+ + R + A R LEL + K G+ L Q R Sbjct: 255 ALGTGEAAIDPGK-----RVELAWRGLELPAPWAPKYLMPGMQGLLASRFGLPADAQLRP 309 Query: 296 LQV---LVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANA 352 +Q + + APGL VIEAP G GKTE AL A L + A V ALPTQAT+NA Sbjct: 310 VQQMAVQLASANAAPGLLVIEAPMGEGKTEAALLAAEILAARSGAGGVFLALPTQATSNA 369 Query: 353 MLTRMEASASHLF--SSPNLILAHGNSRFNHLFQSIKSRAITEQGQE------------- 397 M R+ + ++ LAHG + + F S A + Sbjct: 370 MFARVVNWLRQVPREGVASVHLAHGKAALDDAFASFLRAAPRLTSIDADGYAGEANVRRD 429 Query: 398 ----EAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDE 453 A + QWL + KK L V TIDQ+L + L +H +R L + V+++DE Sbjct: 430 RRAGSADMVAHQWL-RGRKKGILSPFVVGTIDQLLFTGLKSRHLALRHLAVAGKVVVIDE 488 Query: 454 VHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENN--SAY 511 VHAYD YM+ LE VL V+LLSATLP ++Q L++ YG T + AY Sbjct: 489 VHAYDAYMSVYLERVLSWLGAYRVPVVLLSATLPADRRQALVEAYGGITSEALRDAREAY 548 Query: 512 PLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVC 571 P++ + + E +++ A + +R+ A G Sbjct: 549 PVLTAVTIGAPAQAVGTEPAEGRRVDVNVE------AFDDDLGRLADRLEAELVDGGCAL 602 Query: 572 LICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRI 631 +I N V Q+L+E + + H+RF DR K+ +++ FG +G R I Sbjct: 603 IIRNTVGRVLQTAQQLRERFGAG-QVTVAHSRFIDLDRARKDADLLARFGHDGARPRRHI 661 Query: 632 LVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRK-----YRPAGFEIPVATIL 686 +VA+QV EQSLD+DFD L+T P DL+ QR+GR+HRHHR RP + Sbjct: 662 VVASQVAEQSLDIDFDLLVTDLAPIDLVLQRMGRVHRHHRGGPEQSERPPSLRTARCLVT 721 Query: 687 LPDGEGYGRHE-----HIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMD 741 D G +Y ++ L G++L P + Y + + Sbjct: 722 GVDWAGIPSAPIAGSVAVYGLHPLLRSLAVLQPYLTGSALTLPGDINPLVQCAYAQSFVA 781 Query: 742 EPEW---------------VGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETI-LA 785 W V E R R ++ W + +D A Sbjct: 782 PTGWGEAMDAAQAEHMAHIVQQREGAMAFCLDEVRGPGRSLIGWIDGGVGDADDTRAGRA 841 Query: 786 VTRDGEMSLPLLPYVQTSSGK-----QLLDGQVYEDLSHEQQYEALALNRV--------- 831 RD ++ +L + S G L G+ +L E A Sbjct: 842 QVRDSPETIEVLVVQRGSDGVLRTLPWLDRGRGGLELPTEAVPPPRAARAAAASALRLPG 901 Query: 832 ---------NVPFTWKRSFSEVVDEDGLLWLEGKQ---NLDGWVWQGNSIVITYTGDEGM 879 V +R + E WL+G+ + ++Y D+G+ Sbjct: 902 LFAKPWMFDRVLRELEREYHEAWQAKESSWLQGELLLVLDEECRTVLAGYELSYNPDDGL 961 Query: 880 TRVIPANP 887 V+P P Sbjct: 962 EMVMPGEP 969 >UniRef50_A8SDS1 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SDS1_9FIRM Length = 918 Score = 471 bits (1211), Expect = e-131, Method: Composition-based stats. Identities = 215/938 (22%), Positives = 348/938 (37%), Gaps = 109/938 (11%) Query: 12 GKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFI 71 GK+ + L H D A + + Q + ++ + A F Sbjct: 27 GKTD--PENTSLWLPLWMHLWDTAGIMERLVRQWLPESAKRAMGFER-EEALLAHARFLG 83 Query: 72 ALHDIGKFDIRFQYKSAESWL--KLNPATPSLNGPSTQMCRKFNHGAAG-LYWFNQDSLS 128 +HDIGK + FQ + + + Q R+ H AG Sbjct: 84 GIHDIGKATVAFQANILRTLPEARQRLEMLTPLDCPEQNRRESPHARAGEAILLWN---- 139 Query: 129 EQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILH--SQDQDKSRWEMPASLASYAAQ 186 + V HHG + D WE Sbjct: 140 ------------------DCPGGLASIVGAHHGRPQSCAAVDDQLECWESNYYPKGQKKV 181 Query: 187 DKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDA 246 + E + + + D+ P LL G +ADW+ S T + E+ Sbjct: 182 WESFWTELLMTVLQDCGFDDTAELYDLDPQEEVLLTGLLIMADWIASNTEYFPLIPVEEL 241 Query: 247 PSDINALRTYFQDRQQDASRVLELS-GLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPV 305 S + R A L L + + + G+ P +Q V Sbjct: 242 GSMEDYPA-----RVDRAWEKLALPFPWEAQPGIADPQEFAVRFGFAPNAVQRAVLEAVD 296 Query: 306 ---APGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASAS 362 PG+ ++EA G GKTE ALA A + + V F LPTQATAN + R+ A Sbjct: 297 TAAEPGILILEAQMGVGKTEAALAAAEIMASRFGLGGVFFGLPTQATANGIFPRLLGWAD 356 Query: 363 HLFSS---PNLILAHGNSRFNHLFQSIKSRAI--TEQGQEEAWVQCCQWLSQSNKKVFLG 417 + LAHG + N + ++ R + E QEE VQ QW + NK+V L Sbjct: 357 TQTEETLPQAIKLAHGMAELNENYLRLQGRGVQLEEDAQEEHRVQVHQWF-RGNKQVLLA 415 Query: 418 QIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGG 477 + T+DQ+L++ L KH +R LG+ V+I+DE HAYDTYMN L+ L+ Sbjct: 416 NFVIGTVDQLLLAALAQKHVMLRHLGLAGKVVIIDECHAYDTYMNCYLDRTLEWLGWYKV 475 Query: 478 SVILLSATLPMKQKQKLLDTY----GLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQ 533 VILLSATLP +++ +L++ Y P E + YPL+ W ++ + + Sbjct: 476 PVILLSATLPARRRTELVEAYQQKKAAPDAPWETSCGYPLLIWTNGAEVKQTAIPSDAPG 535 Query: 534 LPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNT 593 + + L + + + G +I N V AQ Q L+E Sbjct: 536 QTVQLT----------TLTEPELPALLRRKLAEGGCAGVIVNTVKKAQKIAQLLRESLPD 585 Query: 594 QVDIDLFHARFTLNDRREKENRVISNFGKNG--KRNVGRILVATQVVEQSLDVDFDWLIT 651 + ++ LFHA+F + DR +EN++++ GK + I+V TQV+EQSLD+D D L+T Sbjct: 586 K-EVQLFHAQFLMPDRAARENQLMARIGKGSAPECRNDLIVVGTQVMEQSLDIDLDVLVT 644 Query: 652 QHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQ 711 + CP DLL QR+GRLHRHHR RPA + +L + + ++WRT++ Sbjct: 645 ELCPMDLLLQRIGRLHRHHR-SRPAPLQQACCAVLDTGEDAFDAGSEAVYGQWLLWRTRK 703 Query: 712 HIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEK----------- 760 + S+ P+ + +Y G M EK Sbjct: 704 FLPR----SIRLPEEISPLVQRVYGWEREAPGGAQGEEMRSIYERTQEKMKARAEAYLVP 759 Query: 761 -----RFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSG-------KQL 808 R L + +D A RDG+ S+ +L + + G ++ Sbjct: 760 QPETHRLAQLNTLDDWMQNEGARSDPAARAAVRDGDPSVEVLVMQRRADGSIHFLPWQEG 819 Query: 809 LDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGN- 867 + + +A ++ +P + +++ +V L + + L W Sbjct: 820 GSAVAVDSPPPPETALKIARQKLRLPAVFGKAW-KVDGVIRELEADNRSRLAAWQLSPLL 878 Query: 868 -----------------SIVITYTGDEGMTRVIPANPK 888 + + Y + G+ + Sbjct: 879 HGELILLLDENLTARLAGMELCYDRENGLYYQKEETDE 916 >UniRef50_D2L2X4 CRISPR-associated helicase Cas3 n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L2X4_9DELT Length = 892 Score = 470 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 273/896 (30%), Positives = 367/896 (40%), Gaps = 77/896 (8%) Query: 7 ICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTF-CRNEMLSKQRVKA 65 + HYWGK++K T HLL+YHCLDVAA D L ++ + A Sbjct: 1 MYHYWGKAAKGST---AHHLLVYHCLDVAATLRALLDADKRLHQRLHALAPAVAPADLDA 57 Query: 66 WLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQD 125 LL+F LHD+GKF FQ + + KL+ GP + +H G F + Sbjct: 58 LLLYFAVLHDLGKFAPAFQQQRQDIVDKLD-------GPPAKRICNAHHSHLGKAIFFDE 110 Query: 126 SLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAA 185 + D PH + P +A GHHG QD S +P S A+ Sbjct: 111 DIVVAWQPSLL-CRDGWPH-KDILAPLTDAAFGHHGKPP--QDLSDSNLRLPPSTAAAIR 166 Query: 186 QDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNED 245 Q E L P G + N S AG +ADWL S D Sbjct: 167 Q--FMGEVCSRFLPGPLTLPGGDAANQAFRPVSWFFAGLLVVADWLASGQGFAYCETPMD 224 Query: 246 APSDINALRTYFQDRQQDASRVLELSGLVSN-KRCYEGVHALLDNGYQ---PRQLQVLVD 301 + + A + G+VS R G H LL + Q P LQ Sbjct: 225 LAVY------WNERALPQARATVADCGMVSPLPRQGGGFHELLPHIEQKYGPTPLQAYAL 278 Query: 302 ALP---VAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRME 358 + P L + E TG+GKTE AL A ++ A LPT ATAN M RM Sbjct: 279 EVAGRDSGPRLFIFEDVTGAGKTEAALLAAHAVMAGGEAHGFYIGLPTMATANGMYARMA 338 Query: 359 ASASHLFSS-----PNLILAHGNSRFNHLF--------QSIKSRAITEQGQEEAWVQCCQ 405 AS LF P+L+LAHG F + Q ++ C Sbjct: 339 ASYRALFMDADTVVPSLMLAHGARGIQDAFLHSIGLERGRDGESDAADGEQPDSGAFCAA 398 Query: 406 WLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLL 465 WL+ + KK L GV T+DQ L++VLP KH+ +R LG+GR+VLI DEVHAYD Y LL Sbjct: 399 WLADNRKKSLLAPCGVGTLDQALLAVLPAKHQCLRLLGLGRNVLIADEVHAYDPYTTRLL 458 Query: 466 EAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRF 525 E +L QA +GG ILLSATLP + KQ L + + YP+ Sbjct: 459 ETLLTFQAGLGGCAILLSATLPRRIKQGLAAAFCRG-------AGYPVPAVSADPLPLAT 511 Query: 526 DLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQ 585 L P + + + L+R++A AG L+CN VD A Sbjct: 512 RLANGVFTETPLAQTRTLSVAVTLCHDPAEALDRLVAVHTAGGCAILLCNTVDRAMAARN 571 Query: 586 RLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNG--KRNVGRILVATQVVEQSLD 643 L E D+ LFHARF L DR E RV++ FGK + G+ILVATQV+EQSLD Sbjct: 572 LLAERLPP-ADVLLFHARFALCDRLAIEERVLAIFGKGSTTEIRRGKILVATQVIEQSLD 630 Query: 644 VDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPD----------GEGY 693 VD D+L+T+ P +L+ QR GR RH+RK+RPAGF P +L P Sbjct: 631 VDADFLVTELAPMELVLQRAGRCQRHNRKWRPAGFVGPAVLVLSPPAVDEPGPGWGEAEL 690 Query: 694 GRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDK- 752 G+ +Y V+WRT Q + L P R+ ++ YD + P + + DK Sbjct: 691 GKGLFVYPGHDVLWRTAQLLARWERVEL--PRDARELVEGAYDADALPTPAALQSAEDKQ 748 Query: 753 FESAECEKRFKARKVLQWAEEYSLQDNDETILA----VTRDGEMSLPLLPYVQTSSGKQL 808 A EK L++++ Y TR GE + L G L Sbjct: 749 TGKASAEKSLALFNGLEFSQGYGTDAAAGHWHDDRETPTRLGEERVTLRLVRVVDDGLAL 808 Query: 809 LDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVW 864 G+ + A + V+VP + + L D W Sbjct: 809 WAGEGLD-------AATCARSEVSVPKHRGDALAATDAWQERLDAFAATLPDKGRW 857 >UniRef50_Q5YRB2 Putative uncharacterized protein n=1 Tax=Nocardia farcinica RepID=Q5YRB2_NOCFA Length = 914 Score = 468 bits (1204), Expect = e-130, Method: Composition-based stats. Identities = 203/871 (23%), Positives = 309/871 (35%), Gaps = 71/871 (8%) Query: 11 WGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVL--QNTFCRNEMLSKQRVKAWLL 68 W KS + L+ H D VA WD+ + + + + L+ Sbjct: 10 WAKSDR----EGGSLSLVRHLADSGEVAKLVWDRWLPTHTRQRISVGLPGGEADGRTLLV 65 Query: 69 FFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLS 128 + A HDIGK F + E ++ + + + H AG Sbjct: 66 WLAATHDIGKLTPAFACQVPELADAMHDRGLRM-PDALGDRKALPHSLAGEVTL------ 118 Query: 129 EQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDK 188 F E + HHG ++ + ++ + Sbjct: 119 -------LEFLTGLGWDREVAKTYAVVAGSHHGVPPTVREVRNAPARTTLFGEGQWSRSR 171 Query: 189 QAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPS 248 +++ + L + + SLL + DW+ S + + Sbjct: 172 DELLRFVTERTGAWELLERLRLIPLTVTQQSLLTAAVIVTDWIASNQDLFPLDEARVSST 231 Query: 249 DINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVA-- 306 A+ EL S +R + PR LQ+ + Sbjct: 232 AAPAVWELLGLPHPWQPSASELHDDPSQRRFFCD-RFGWPPSIHPRPLQLECLRVADVTP 290 Query: 307 -PGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLF 365 PGL V+EAP G GKTE ALA A L + + ALPT AT++AM R+ A +L Sbjct: 291 VPGLMVVEAPMGEGKTEAALAAAEILAQRFGLGGIFVALPTMATSDAMFARVRKWAENLP 350 Query: 366 SSPNLI-LAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTI 424 P + LAHG + N F S+ R G + A KK L + V TI Sbjct: 351 VPPAAMFLAHGKAALNAEFTSLHRRGFVSIGTDCADSGVVAHAWFVGKKGPLANVVVGTI 410 Query: 425 DQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSA 484 DQ+L + L +H +R L + V+++DEVHA D+YM+ L L+ A VILLSA Sbjct: 411 DQILRAALKTRHLMLRHLALANKVVVIDEVHAADSYMSTYLCRSLEWLAAYRVPVILLSA 470 Query: 485 TLPMKQKQKLLDTYGLH-----TDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFS 539 TLP Q++ L+ Y + + YP I + +A + Sbjct: 471 TLPPSQREALVLAYARGYGTGDDEVCLTDHGYPAITH--WPNPELSTTVAASGRSIAGIE 528 Query: 540 IQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDL 599 I L + ER+ A G ++CN V AQ Y L+ + ++ L Sbjct: 529 IAHVADDLD------VLAERVRQALADGGIAGVVCNTVARAQETYLALERAGFPEDELLL 582 Query: 600 FHARFTLNDRREKENRVISNFGK---NGKRNVGRILVATQVVEQSLDVDFDWLITQHCPA 656 H+RF + R E E R+ + G R ++V TQV+EQSLD+D D LIT P Sbjct: 583 IHSRFVASHRAELEARLRAMLGPPDGGTVRPDRLVVVGTQVIEQSLDIDLDLLITDLAPM 642 Query: 657 DLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYG----RHEHIYSNVRVMWRTQQH 712 DLL QR+GRLHRH R RP P + D R + + R Sbjct: 643 DLLLQRIGRLHRHDRPARPPKLVRPSCWVRGADWNEEPPQPVRGSQAVYGLARLLRCAAV 702 Query: 713 IEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGN---GMDKFESAECEKRFKARKVL- 768 + A+L PD + Y + +W+ ++ +R KAR L Sbjct: 703 LRRR--AALTVPDDVPGLVADAYHEQLEVPTDWLAAYHLAEKQWHEHVDRQREKARTYLL 760 Query: 769 -----------QWAEEYSLQDNDE-TILAVTRDGEMSLPLLPYVQTSSGKQLLD------ 810 W D D A RD E ++ + + + L Sbjct: 761 SAPYGDNRTLHGWVATGIPDDADGVGGQAQVRDAEDTIEAIVVQRCGDHVRALPQVPEIG 820 Query: 811 GQVYEDLSHE--QQYEALALNRVNVPFTWKR 839 G + + LA + +P R Sbjct: 821 GTTVPTDAEPPVWLAKKLAACTIRLPAMLTR 851 >UniRef50_D1NTH7 CRISPR-associated helicase Cas3, core n=1 Tax=Bifidobacterium gallicum DSM 20093 RepID=D1NTH7_9BIFI Length = 1019 Score = 467 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 221/990 (22%), Positives = 361/990 (36%), Gaps = 146/990 (14%) Query: 1 MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQ--NTFCRNEML 58 ++ + WGK+ + G L H D VAD W Q + T RN Sbjct: 12 IDLSEAARSIWGKTDR--QTGEQWSPLYVHMHDAGFVADRLWYQWLPEHTKRTITRNFNN 69 Query: 59 SKQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLN--------PATPSLNGPSTQMCR 110 + ++F A+HDIGK FQ +S ++ P L Sbjct: 70 DYDLARKVVIFLAAVHDIGKATPIFQNRSIHISGDVDGVKSMAWKPEQAGLPFSPYLEGV 129 Query: 111 KFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILH---SQ 167 + H AG + D + V GHHG + Sbjct: 130 EPYHTIAGELILERY------------LTDTYGFTQRGARSYASVVGGHHGRPAETGKLR 177 Query: 168 DQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAG---LSINDIPPDCSSLLAGF 224 D K EM +S A Y+ + RE ++ LT A L ++ + ++ G Sbjct: 178 DAYKRNAEMGSSDA-YSLWQEVQRELIAFAIQISGLTDADMQRLRTLELGSHVALIITGM 236 Query: 225 CSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASR---------VLELSGLVS 275 +ADW+ S + F S + + F++ ++ R + S L Sbjct: 237 VIMADWIASNSDAGMFPLFPARASAEKSAPSEFRELRERGERGWSTAKLTPAWQASALED 296 Query: 276 NKRCYEGVHALLDNGYQPRQLQVL--------VDALPVAPGLTVIEAPTGSGKTETALAY 327 H P+Q Q+ + PG+ ++EAP G GKTE AL Sbjct: 297 LDNAQAVQHWFQQRFNMPQQAQMRPMQKKVVELCNAVEQPGIMIVEAPMGEGKTEAALMA 356 Query: 328 AWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSS--PNLILAHGNSRFNHLFQS 385 A L + A V ALPT AT + M TR+ + L S ++ L+HG + N F+ Sbjct: 357 AEILAAKTQAGGVCVALPTMATTDPMFTRVHSWLDALPSDTDKSVWLSHGKATRNREFRG 416 Query: 386 IKSRA------ITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFI 439 + +++ E ++ WL KK L +CT+D VL+ L +KH + Sbjct: 417 LIAQSKSMASVYDETAPRKSNTMVADWL-WGRKKGPLANFLICTVDHVLMGALQMKHVAL 475 Query: 440 RGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTY- 498 R L + +++VDE HAYD YM LE VL + V+LLSATLP ++ LD Y Sbjct: 476 RDLALANKIVVVDECHAYDRYMQQYLECVLTWLGGLQVPVVLLSATLPPALREAYLDAYM 535 Query: 499 -------------------------------------GLHTDPVENNSAYPLINWRGVNG 521 G T+ ++ AYPLI++ Sbjct: 536 RGRKAEHAWEYQMNHAQLRTGSIRGRKKRQHPPESMGGSETEETDSRIAYPLISYTDGMH 595 Query: 522 AQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQ 581 + RF+ A + + G ++C+ V AQ Sbjct: 596 IHHAAVAPSGRSQTVRFN--------AMGDDIEELCALLQDKLREGGCAAVVCDTVGRAQ 647 Query: 582 VCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFG-----KNGKRNVGRILVATQ 636 Y+ L++ ++ L HARFT +DRR KE +++ G +NGKR I+V TQ Sbjct: 648 KVYEALQDQYAAD-EVMLLHARFTDDDRRSKEEQLLHMLGNAATLENGKRPHCLIVVGTQ 706 Query: 637 VVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATIL----LPDGEG 692 V+EQSLD+D D +I+ P DL+ QR+GR+HRH R RP IP + Sbjct: 707 VLEQSLDIDVDLMISDIAPVDLIMQRVGRMHRHERSQRPPRVAIPECYVRGVTSWQTPTF 766 Query: 693 YGRHEHIYSNVRVMWRT--QQHIEELNGASLFFPDAYRQWLDSIYDDAEMD--EPEWVGN 748 H+Y +M +E + P+ + Y + +W + Sbjct: 767 DNGVSHVYEKASLMEALTVLDITDEQACSEQLLPEDIAVVVREAYGADACERIPEQWHAS 826 Query: 749 GMDKFESAECEKRFKARKVLQW---------AEEYSLQD-----------NDETILAVTR 788 + + K ++ + A + +L D +E + R Sbjct: 827 YEKAVQVRDEHDESKQKRATDYCLKQLDTMLASKETLVDFFGRAGLLDRQGEERGMQAVR 886 Query: 789 DGEMSLPLLPYVQTSSGKQ--------LLDGQVYEDLSHEQQYEALALNRVNVPFTWKRS 840 D + SL ++ VQ G L + + + + +A+ + +P + Sbjct: 887 DAQESLEVMLLVQDEDGVLHVLDEDGGLGPVVPADTIPNSRIVDAMLGQMIRLPLSLTHP 946 Query: 841 FSEVVDEDGLLWLEGKQNLD-GWVWQGNSI 869 ++ + ++ + WQ + + Sbjct: 947 KNDGDCIEAIIEDLERTGGHYAMAWQESPM 976 >UniRef50_Q4JWJ6 Putative uncharacterized protein n=3 Tax=Corynebacterium jeikeium RepID=Q4JWJ6_CORJK Length = 950 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 230/946 (24%), Positives = 348/946 (36%), Gaps = 113/946 (11%) Query: 2 EPFKYICHYWGKSSKSLTKGNDIH---LLIYHCLDVAAVADCWWDQS--VVLQNTFCRNE 56 + KS D H L+ H +D AVA WD ++ R+ Sbjct: 21 SFSPTASAFLAKS-------GDEHGPMSLVQHMVDSGAVATYLWDTWFSPQTKDFLSRST 73 Query: 57 MLSKQRVKAWLLFFIALHDIGKFDIRFQYKSAE-------SWLKLNPATPSLNGPSTQMC 109 L + +++ +F +A HD+GK F K + N P + + Sbjct: 74 RLPPEHIRSLAVFLVAAHDVGKISGPFLRKLRSPETNAPLLYPLENAGIPIPDLTPDEDV 133 Query: 110 RKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQ 169 H + + + V HHG++ + Sbjct: 134 ANLAHPLYSRELLKRWLKTHGLKAPV-------------ALSLTQTVEAHHGWLTTA--- 177 Query: 170 DKSRWEMPASLASYAAQDKQAREEWISVLEA-LFLTPAGLSINDIPPDCS-SLLAGFCSL 227 R + + SY + + A +E + L + + PA + PP + ++ GF + Sbjct: 178 --GRKAVTTFVNSYPPEWQSAVDEILDTLASTAHVQPALDGLEGKPPTTAIQIITGFTVM 235 Query: 228 ADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALL 287 DWL S T F+ I + + S + V Sbjct: 236 CDWLASNTDFFPLRFSGSQADRIKLGMAKAKFDLHTEFK--HFSEDPTQIAENYRVSFAW 293 Query: 288 DNGYQPRQLQVLVDALPV----APGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFA 343 PR +Q V L P L +IEAPTG GKTE AL A A I A Sbjct: 294 PESATPRPVQFAVAELLNSNSPGPTLLIIEAPTGEGKTEGALQAALLFAQHNHASGAILA 353 Query: 344 LPTQATANAMLTRMEASASHLFSSPNLI---LAHGNSRFNHLFQSIKSRAITEQGQEEAW 400 PT ATAN + R ++ + + LAH +R N ++ ++ I E + Sbjct: 354 APTMATANGLFKRFSCWVENITENSAVSSLYLAHSKNRLNKDYRKLRYSDIGEDCADHGT 413 Query: 401 VQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTY 460 V WLS K L V TIDQVL+ L ++H +R L + V+I DEVHAY TY Sbjct: 414 VIATDWLS-GRKNGLLSNFVVGTIDQVLMMALQIRHSMLRHLALAGKVVIFDEVHAYSTY 472 Query: 461 MNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGL---HTDPVENNSAYPLINWR 517 N L L+ A G VILLSATLP +K++L+ YG D YPL+ Sbjct: 473 TNEYLAETLRWLAAYGVPVILLSATLPTSRKKELVTAYGGQMHKNDLALAGEGYPLLTLV 532 Query: 518 GVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLV 577 G + P+ + + I + + + + + G V +ICN + Sbjct: 533 TEEGVSEQAVTPRPDDMHAKVEIIDDSV--------EELTRLVTELCSDGGVVLVICNTI 584 Query: 578 DVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVG----RILV 633 AQ + L + ++ L H+ FT DR E +++ G +R G RI+ Sbjct: 585 KRAQEAFTALDSVFPD--EVRLHHSAFTGLDRARHEEDLLNELGPASQRKQGRPPLRIVC 642 Query: 634 ATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRK--YRPAGFEIPVATI-----L 686 TQ +EQSLD+D D LIT P DL+ QR GRLHRH R RP I Sbjct: 643 GTQTLEQSLDIDADALITDIAPMDLIIQRAGRLHRHQRPDSDRPEKLRDARIYIRGVEET 702 Query: 687 LPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYD-DAEMDEPEW 745 P E+IY + ++ Q E+ P Q + YD DA+ + PE Sbjct: 703 TPVPIWDTGTEYIYDDALLLTTYQLLSTEVVETGFRRPSDVPQLVQRAYDLDADHNFPEA 762 Query: 746 VGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDET---------------------IL 784 ++E ++ R K ++ + + DET Sbjct: 763 WAA---RWEESKTSSRGKDDSDKSRSKVFRIPSPDETGKRLDSLFEMLVHDRSEEEIKAT 819 Query: 785 AVTRDGEMSLPLLPYVQTSSGKQLLDGQ-------VYEDLSHEQQYEA--LALNRVNVPF 835 A RD + S+ ++P V G + L G V ED + A LA + V +P Sbjct: 820 ASVRDADNSIEIIPIVDDEYGYRPLPGLNNDQPECVVEDTTIPNFDTAFQLAASTVRLPT 879 Query: 836 TWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGN---SIVITYTGDEG 878 + RS D + Q +GW + + + G Sbjct: 880 MFTRSDKV---WDRTVDALEDQTPEGWKDHYLLRGQVALRLDQNLG 922 >UniRef50_B0LU92 CRISPR-associated helicase Cas3 n=2 Tax=Streptomyces RepID=B0LU92_9ACTO Length = 1002 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 219/989 (22%), Positives = 342/989 (34%), Gaps = 140/989 (14%) Query: 10 YWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNT-FCRNEMLSKQRVKAWLL 68 WGKS++ G +LL+ H LD AAVA+ WD + R + Sbjct: 26 LWGKSAERA--GGQTNLLLSHLLDTAAVAERLWDSFLAPSTRGLLDEVSGGPGRGRRLFA 83 Query: 69 FFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPST-QMCRKFNHGAAGLYWFNQDSL 127 + A+HD+GK FQY+ + A +GP+ R++ H A Y + Sbjct: 84 WLCAVHDLGKATPAFQYQWEPGARAVRAAGLRWHGPTVANQKRRWRHEHASAYLLMR--- 140 Query: 128 SEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQD 187 GHHG R + Sbjct: 141 ----------VLRRVGWAERHVAWVWPLAAGHHGVFPEEDAVQPPRRGKGQLQGGADWEV 190 Query: 188 KQAREEWISVLEALFLTPAGLSINDIPPDCSSL-LAGFCSLADWLGSWTTTNTFLFNEDA 246 QA +E F A + +P L ++G +ADW+ S L + Sbjct: 191 AQAGLLERVTVELGFGGLAEVQPVAVPARAVQLHVSGLIVMADWIASDEKHFPGLPDMSQ 250 Query: 247 PSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALP-- 304 S A ++R A L L G G + R Q LV Sbjct: 251 VSMKGA-----RERAGLAWTRLGLRGGWGALAGPGPEAFRERFGVEARPSQRLVMQAARD 305 Query: 305 -VAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASH 363 PGL V+EAP G GKT+ AL A L + AD V +PTQAT++ M ++ A Sbjct: 306 MEGPGLLVVEAPMGEGKTKAALMAAEILAARFGADGVFVGMPTQATSDPMFGQVRAWLQA 365 Query: 364 LFSSPN----LILAHGNSRFNHLFQSIKSRAITEQGQ----------------------- 396 L + + L HG FN ++ + G+ Sbjct: 366 LGRGDDLASQVALLHGKRMFNKEWRGLVEGRERVGGEFGFAGVDEFGCEGDVYGMGGQAR 425 Query: 397 ---EEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDE 453 E + K+ L V T+DQ+L++ +H +R G+ V+++DE Sbjct: 426 GVGERSGAGGPAEWFLGAKRGLLCPFVVGTVDQLLLAATRSRHVMLRMAGLAGKVVVLDE 485 Query: 454 VHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTY--------GLHTDPV 505 VHA D YM+ L L+ G V+LLSATLP Q+++L++ Y L + + Sbjct: 486 VHAADVYMSQFLVEGLRWLGQAGVPVVLLSATLPPGQRRELVEAYVAGAGSREELRLEAL 545 Query: 506 ENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSI--------------QPEPICLADML 551 YP + + E P S+ A Sbjct: 546 PEPGGYPSVTSAWSAVEGPCVRVDSCEGWRPDLSVALAVCSEPVPGPRASRVQERQAQEE 605 Query: 552 PDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRRE 611 D+ +++ + A G ++ N V AQ Y L + ++ L H R R E Sbjct: 606 ADVAVVDLLRAQLEGGGCALVVRNTVARAQSLYSALAGVFGAG-EVMLLHGRLAAGARAE 664 Query: 612 KENRVISNFGKNGK-----RNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRL 666 + R + G +G R ++VATQ+ EQS DVD D L++ P DLL QR+GRL Sbjct: 665 RTERCLGLLGVSGPGVGEGRPRRLVVVATQLAEQSFDVDVDLLVSDVAPVDLLLQRIGRL 724 Query: 667 HRHHRKYRPAGFEIPVATIL--------------LPDGEGYGRHEHIYSNVRVMWRTQQH 712 HRH + RP G +P + + G + R + ++ RT Sbjct: 725 HRHGDRVRPPGLVVPQVFLTGLGGGLVEGADAGSVCGGPAFIRGSEVIYGRHLLLRTAAV 784 Query: 713 IEELNGAS-----------LFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKR 761 + + P + ++Y D E+ W + E +R Sbjct: 785 VADALRPGSECGSGSGGGVWQVPGGVPGLVAAVYGDEELVPAGWRDDAGAARVEWEERQR 844 Query: 762 FKARKVLQWAEEYSLQDN------------------DETILAVTRDGEMSLPLLPYVQTS 803 +A+ + + + + V RDGEM ++ V+ Sbjct: 845 ERAQSAVPFLLTRRGDKEGVTLAGLHRVAVAASGGAEGGLDGVVRDGEMGEEVVLVVRER 904 Query: 804 SG--KQLLDGQ---VYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDE------DGLLW 852 G + L G+ V D++ E + LA V +P S + + L Sbjct: 905 EGEVVRTLSGRALSVNGDVADELIDDVLA-GTVRLPGGPASSAAAALGPLPGWVGHPRLR 963 Query: 853 LEGKQNLDGWVW-QGNSIVITYTGDEGMT 880 LDG W + + Y G+T Sbjct: 964 YARALVLDGSGWGELGEHRVHYDDVLGLT 992 >UniRef50_Q67RP4 Putative helicase n=1 Tax=Symbiobacterium thermophilum RepID=Q67RP4_SYMTH Length = 936 Score = 465 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 224/901 (24%), Positives = 336/901 (37%), Gaps = 109/901 (12%) Query: 2 EPFKYICH--YWGKSSKS---LTKGNDIHLLIYHCLDVAAVADCWWDQSVV--LQNTFCR 54 + + H W K+++ H L H +D A VA W + L++ R Sbjct: 7 QDWNDYLHPEIWAKTARGVELAEGEGHYHPLCCHMIDTAMVAWRMWRYVLPQRLRDQIRR 66 Query: 55 NEML-SKQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFN 113 L + W+ FF LHD+GK F + E W L S Sbjct: 67 QLGLQTDDEAGRWIAFFAGLHDLGKATPAFAKQWPEGWRLLTEQKYGAASGSESKPHYV- 125 Query: 114 HGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSR 173 + S + P P + HHG + D + Sbjct: 126 ----------------LTTFLLESLLEELGLPGAVAVPVAAVIGAHHGLFPTATDLRHAE 169 Query: 174 WEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLL---AGFCSLADW 230 + ++A+ + +L + +SLL AG S+ADW Sbjct: 170 RYAGKAK------WQEAQAHLVRLLAHVLGVDRLNVPTGDLWQANSLLVILAGLTSVADW 223 Query: 231 LGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNG 290 + S T F D L +Y + + A L G Sbjct: 224 IASNHTYFPF------AGDRVRLPSYARQARWRAWMALHQLGWFHRPVAMAPRSFTELFD 277 Query: 291 YQPRQLQVLVDALPV---APGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQ 347 P LQ V A+ P L ++E P G GKTE AL A L + FALPT Sbjct: 278 KVPNHLQKQVLAIADRLSGPSLVLLEYPMGGGKTEAALYLADSLAVAAGQKGLYFALPTM 337 Query: 348 ATANAMLTRMEASASHLFSSP--NLILAHGNSRFNHLFQSIKSRAITEQGQEEAW----- 400 AT+N M R+ + F N+ L HG++ N F+ +++ + E + A Sbjct: 338 ATSNQMFGRVNRYLVNRFPGSRINVQLLHGHASLNAEFELLRAAHLQELERRRAGREQEL 397 Query: 401 ----------VQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLI 450 V +W + K+ L G+ TIDQ L+SVL KH F+R G+ V+I Sbjct: 398 AAVGESTAATVLAAEWFTY-KKRGLLAPYGIGTIDQALLSVLQTKHFFVRLFGLAGKVVI 456 Query: 451 VDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHT---DPVEN 507 +DEVHAYDTYM LL +L A G SV+LLSATLP ++ L+ Y P E Sbjct: 457 LDEVHAYDTYMQTLLTRLLTWLAACGTSVVLLSATLPAHTRKALVAAYAAGRGLPAPAEP 516 Query: 508 NSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLER-MIAAANA 566 YP + W + + I L D R + A Sbjct: 517 EVTYPRVTWLTDMESNAVHIEGA----------ATRTITLRRYAQDDEGWMRALQEALVD 566 Query: 567 GAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKN-GK 625 G +I N V AQ YQ+L++ + ++ LFHAR+ +DR +E V++ FG Sbjct: 567 GGCAAVIVNTVSRAQAVYQKLQDYFPPE-ELCLFHARYPFDDRMAREREVLTRFGPGIAD 625 Query: 626 RNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATI 685 R +LVATQVVEQSLD+DFD L+T P DL+FQR GRL RH R++RP GF P + Sbjct: 626 RPRRAVLVATQVVEQSLDLDFDLLVTDLAPVDLVFQRSGRLWRHRREWRPPGFTEPTLWL 685 Query: 686 LLPDGEG-----YGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEM 740 L+P + + R + + M R+ + + + L PD ++++Y Sbjct: 686 LMPPLDEQGVPQFERGSRLIYDHHTMLRSWLVLAQQDH--LCIPDQLEPMVEAVY--RPA 741 Query: 741 DEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQ-------------------DNDE 781 D PE + + + Q ++ Sbjct: 742 DPPEELPEPLRALWLQTRAVLEAEQARDQQEARRRYIPDVHQNLLEMVLTDLEEEGESHP 801 Query: 782 TILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSF 841 + A+TR G +++ + V+ G+ G + V + Sbjct: 802 AVQALTRLGGIAVTAVCLVEA-DGRLWAPG---PEPREIHLQRRPDKEDVRALLGRAIAI 857 Query: 842 S 842 S Sbjct: 858 S 858 >UniRef50_A5FTJ4 CRISPR-associated helicase Cas3 n=2 Tax=Acidiphilium cryptum JF-5 RepID=A5FTJ4_ACICJ Length = 892 Score = 465 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 245/941 (26%), Positives = 385/941 (40%), Gaps = 111/941 (11%) Query: 2 EPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQ 61 ++ + +WGKS + + ++ H LDVAA M K+ Sbjct: 5 NSWQNVLAFWGKS-YTREDKLFAYPIVAHSLDVAAAGSHL--------------PMPLKE 49 Query: 62 RVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYW 121 K + F ++LHDIGKF FQ + ++ W + GP H A Sbjct: 50 FDKRTVYFLLSLHDIGKFSRPFQAQESDLWPS------RVLGPWPGRVAGPRHDALTAAL 103 Query: 122 FNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLA 181 + F + + + GHHG + D + A Sbjct: 104 LEVFADEGLLDPVFPLGRRGSGWHPSKRSGLIRTIAGHHGRPIDVPDHLEPAVCRQCLDA 163 Query: 182 SYAAQDKQAREEWISVLEALFLTPAGLSI-NDIPPDCSSLLAGFCSLADWLGSWTTTNTF 240 ARE ++L+ +P +AGF +LADW+GS Sbjct: 164 --------AREFVQAMLDLFQPSPLPPPQSRRASARMQWQIAGFLTLADWIGSNEIWFPR 215 Query: 241 LFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNK-RCYEGVHALLDNGYQPRQLQVL 299 + SD++ + + A++ +GL +K R + G AL P Q Sbjct: 216 ---DGTHSDLDPHDYFREVALPRAAQAGADAGLTPSKARTFTGFSALFPKVDTPSPAQSW 272 Query: 300 VDALPVAPG--LTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRM 357 + +P+ G L +IE TGSGKTE AL A +++ A + FALP+ ATAN+M R+ Sbjct: 273 AETVPLPEGAVLAIIEDLTGSGKTEAALTLASRIMASGEAKGIFFALPSMATANSMFQRL 332 Query: 358 EASASHLFSS---PNLILAHGNSRFNHLFQSI------KSRAITEQGQEEAWVQCCQWLS 408 + LF P++ L HG + + F+++ + E + +C WL+ Sbjct: 333 TDTYLRLFEKGSRPSIALTHGKAGLDPRFRALISASPSSASEPREGEAIPSEAECAAWLA 392 Query: 409 QSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAV 468 + ++ +G+ TIDQ L++VLPV+H +R G+ VL+VDEVHA+D+YM+ L+A+ Sbjct: 393 EDRRRSLFADVGIGTIDQALLAVLPVRHAPLRLHGLQGKVLVVDEVHAFDSYMDRELQAL 452 Query: 469 LKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNS----AYPLINWRGVNGAQR 524 L+ A +GGS ILLSATLP++ +Q L D + YPL G Sbjct: 453 LEFHAALGGSAILLSATLPLRMRQSLTDAFRRGAGQEAPRQVTSMHYPLATMVGSEAHTE 512 Query: 525 FDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCY 584 + L P + + + + L R++ AA GA V I N VD A Sbjct: 513 YSLGVRAG--------LPRSVTITRVGTEAEALSRVVDAARLGAAVVWIRNSVDDALEAA 564 Query: 585 QRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNG-KRNVGRILVATQVVEQSLD 643 ++ +D +FHARF DR+ E V+ FGK + +L+ATQVVEQSLD Sbjct: 565 AAVRMQ---NIDPIVFHARFAHCDRQSIELEVLRRFGKESVGQARAGVLIATQVVEQSLD 621 Query: 644 VDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGE----------GY 693 +DFD L+T P D L QR GRL RH+R R G P +L P+ Sbjct: 622 LDFDLLVTDLAPVDSLIQRAGRLWRHNRGTRVVGR--PEMVVLSPEPSMDADAGWLDPLL 679 Query: 694 GRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKF 753 R ++Y N ++WR + + + L P R +++ D+ P + Sbjct: 680 PRTNNVYRNPALLWRGARAL--FAKSDLVTPGDMRPLIEAA-DNVADTPPGLKMAADGAW 736 Query: 754 ESAECEKRFKARKVLQWAEEYSLQDN--DETILAVTRDGEMSLPLLPYVQTSSGKQLLDG 811 + F A VL + E Y+LQ D TR E L + GK + Sbjct: 737 AKHLSHRAFAAGAVLDFDEGYTLQSGAWDRETRTPTRLEEREQATLRLARVKDGKVVPYA 796 Query: 812 QVYEDLSHEQQYEALALNRVNVP-------------------FTWKR-------SFSEVV 845 + DL + + R + W+R + EV Sbjct: 797 GLAGDLRQAWTLSEVRVQRYRIAACPPPAGYSEAANEARSQWGRWERESPHMLLAILEVT 856 Query: 846 DEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMTRVIPAN 886 ++G L L+G++ G+ + Y +G+ R++PA+ Sbjct: 857 KQEGQLMLKGEKP------DGHPVSAIYDAVDGL-RLLPAS 890 >UniRef50_Q47PJ0 CRISPR-associated helicase, Cas3 family n=1 Tax=Thermobifida fusca YX RepID=Q47PJ0_THEFY Length = 944 Score = 464 bits (1194), Expect = e-129, Method: Composition-based stats. Identities = 221/914 (24%), Positives = 332/914 (36%), Gaps = 86/914 (9%) Query: 8 CHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQS--VVLQNTFCRNEMLSKQRVKA 65 +W K + L+ H LD AA A W++ L++T + ++ Sbjct: 18 LRFWAKERGLR---GKTYPLVCHSLDAAAAALVLWNEYLSPGLRDTIASSMETDEEHAGH 74 Query: 66 WLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQD 125 + F+ LHDIGK FQ + A S S H AA W Sbjct: 75 CIAFWAGLHDIGKLTREFQQQIAIDLSAYPGEELSGEQRS--------HAAATGKWLP-- 124 Query: 126 SLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAA 185 F P+ + + GHHG H +SR + S Sbjct: 125 ---------FALPSLGYPNGGLVTGLVAQMLGGHHGTF-HPHPSFQSRNPLAEFGFSSPH 174 Query: 186 QDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTN-TFLFNE 244 +KQ R + + P + D P +S++ G LADWL S L + Sbjct: 175 WEKQ-RHALLHAVFDATGRPTPPDMLDGPT--ASVVCGLVILADWLVSQEDFLLERLTSL 231 Query: 245 DAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALP 304 A +ALR +F+ + +L+ +GL + +P LQ + Sbjct: 232 PADGSASALRAHFETSLRRIPSLLDAAGLRPITVPPATFTESFPHLSKPNGLQASLAKHL 291 Query: 305 ----VAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEAS 360 PGL +I AP G GKTE A A L ALPT ATA+ M TR++ Sbjct: 292 PCLCTGPGLVLITAPMGEGKTEAAYHVADLLGKATGRPGRFLALPTMATADQMHTRLKEY 351 Query: 361 AS------HLFSSPNLILAHGNSRFNHLFQ--SIKSRAITEQGQEEAWVQCCQWLSQSNK 412 A L S L L H + N + + + K Sbjct: 352 ARYRVENTDLPRSSTLALLHSMAWLNPDYAPADLPGVSKVLSNLGHRDPFAATDWLMGRK 411 Query: 413 KVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQ 472 + L V TIDQ L++VL KH +R G+ V++VDE HA D YM LLE +L+ Sbjct: 412 RGLLAPWAVGTIDQALMAVLRAKHNALRLFGLAGKVVVVDEAHAVDPYMQVLLEQLLRWL 471 Query: 473 ADVGGSVILLSATLPMKQKQKLLDTYGLHT---------DPVENNSAYPLINWRGVNGAQ 523 + V+LLSATL L+ Y + +YP + Sbjct: 472 GTLDVPVVLLSATLHHSIANSLVKAYLEGARGRRWNRSEPQPVSEVSYPGWLHVDARIGK 531 Query: 524 RFD-------LLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNL 576 +A + P + P+ + + + + G +IC Sbjct: 532 VTRSSDVDPLPIATTPRKPLEVRLVDVPVKEGALNRSTVLAKELTPLVKQGGCAAIICTT 591 Query: 577 VDVAQVCYQRLKE----LNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRN----- 627 V AQ Y L + L D+ L H+RF R E ++ FGK G ++ Sbjct: 592 VAEAQGVYDLLSQWFATLGEDAPDLYLLHSRFPNRQRTEITATIVDLFGKEGAQSGRRPT 651 Query: 628 VGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRH---HRKYRPAGFEIPVAT 684 G +LVATQVVEQSLD+D D +I+ P LL QR GR RH RP + P Sbjct: 652 RGAVLVATQVVEQSLDLDVDLMISDLAPVSLLLQRAGRCWRHEHLGIINRPQWAKQPELV 711 Query: 685 ILLPDGEG-------YGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDD 737 +L P+ G + R + ++ RT + NGA + P+ +Q +D +YDD Sbjct: 712 VLTPEQNGDADRAPWFPRSWTSVYPLALLQRTYTLLRRRNGAPVQIPEDVQQLVDDVYDD 771 Query: 738 AEM--DEPEWVGNGMDKFESAECEKR------FKARKVLQWAEEYSLQDNDETILAVTRD 789 + D + ++ + A L E+S D DE +LA TR Sbjct: 772 DSLAEDLEADMERMGEELAQRGLARNAVIPDPDDAEDNLNGLTEFSF-DVDEHVLA-TRF 829 Query: 790 GEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDG 849 G S+ +L Y ++G + LD + + + + R+ + Sbjct: 830 GAGSVRVLCYYVDTAGNRWLDPECTVEFPEQGTGREGRFTMADCRDLVARTIPVRMGPWA 889 Query: 850 LLWLEGKQNLDGWV 863 E + W Sbjct: 890 SQLTEDNHPPEAWR 903 >UniRef50_D0Y922 CRISPR-associated helicase Cas3 n=2 Tax=Dehalococcoides RepID=D0Y922_9CHLR Length = 892 Score = 461 bits (1186), Expect = e-128, Method: Composition-based stats. Identities = 219/838 (26%), Positives = 338/838 (40%), Gaps = 91/838 (10%) Query: 8 CHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWL 67 W K+ + H L+YH LDVAAVA W+ Q + ++ +A Sbjct: 7 LKLWAKTGRG--GDLYYHPLLYHMLDVAAVATHMWELLSEDQRKRIGYTLGNE--ARAIT 62 Query: 68 LFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSL 127 LF HDIGK FQ + + + + + HG N+ Sbjct: 63 LFLAGGHDIGKASPGFQQQVPQLSE-------LTDLQVSVNDQNRPHGFVSACVLNRFFT 115 Query: 128 SEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQD 187 + + GHHG S D R + + Sbjct: 116 T----------------------VLGQIAGGHHGIFPRSLDLRMGRDILGNRE--WEIAR 151 Query: 188 KQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAP 247 +E VL+ I P LLAG S+ADW+GS L Sbjct: 152 NGLLQELAKVLKIDISDDTKCKPKIIDPFIIPLLAGLISVADWIGSNQDFFPCLTKPGQL 211 Query: 248 SDINALRTYFQDRQQDASRVLELSGL-VSNKRCYEGVHALLDNGYQPRQLQVLVDALP-- 304 ++ YF+ + A + L G E + +G+ P LQ ++ + Sbjct: 212 PELVG-DKYFEVAKDRADKALHELGWMPGVIFAKEAPFTHVFSGFIPNSLQNSIEDIAIK 270 Query: 305 -VAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASA-- 361 +P L +IEAPTG GKTE AL A + + A + A+PTQAT+NAM R++ Sbjct: 271 QTSPYLMIIEAPTGQGKTEAALYAADLALCRGFARGIYIAMPTQATSNAMFKRVQVDYLK 330 Query: 362 -SHLFSSPNLILAHGNSRFNHLFQSIKSR------AITEQGQEEAWVQCCQWLSQSNKKV 414 NL L HGN+ + + + A T+ G ++ W + + K+ Sbjct: 331 NRRHKGKLNLQLVHGNALLAGMGEVREGEISDFKIADTDTGDTNTDMEAQSWFT-AKKRP 389 Query: 415 FLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQAD 474 L GV TIDQ L+SVL +H F+R G+ V+I DE+HAYD YM +LE +L+ A+ Sbjct: 390 LLSPFGVGTIDQSLLSVLQTRHWFVRLFGLAGKVVIFDEIHAYDAYMITILERLLQWLAE 449 Query: 475 VGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQL 534 + +VILLSATLP +++ L+ Y N YP I + Sbjct: 450 IDCTVILLSATLPEARRKALIYAYSGQNS--SENKCYPRITLAQSRHYINQETNELIVCK 507 Query: 535 PPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQ 594 + + G +IC+ VD + ++ L+ + Sbjct: 508 EVSVEDSHCIYLNFSRNDLEILAGELTRKLEHGGCAAVICDTVDRSIEVFRYLQANM-HE 566 Query: 595 VDIDLFHARFTLNDRREKENRVISNFGKNGK----------RNVGRILVATQVVEQSLDV 644 + LFHAR RRE+E+ V+ FGK K R +LVATQV+EQSLD+ Sbjct: 567 TECLLFHARTLQVWRREREDEVLRKFGKGTKQHDGSYTNPDRPFRAVLVATQVIEQSLDL 626 Query: 645 DFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEG------YGRHEH 698 DFD + ++ P DLL QR+GRLHRH R RP G E+P TIL G +G++ Sbjct: 627 DFDLMFSEIAPVDLLLQRIGRLHRHSR-TRPEGLEMPQFTILCDGNRGGAPPDTFGKNIE 685 Query: 699 IYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYD-DAEMDEPEWVGNGMDKFE--- 754 + ++ RT + A + P + ++ +Y D E+ P+W+ Sbjct: 686 HIYDRYILLRTW--LVVRGKAMIEVPAETEKLIEKVYGTDEEICGPDWIEALEKAKRNLV 743 Query: 755 -SAECEKRFKARKVL-------QWAEEYS---LQDNDETI----LAVTRDGEMSLPLL 797 E ++ +R ++ +++ D+D + A TR+G+ S+ L+ Sbjct: 744 HEQEESQKAASRLLICPPCDSEDIVRQFNCELFDDDDPEVHTAIRAATREGDPSIMLV 801 >UniRef50_A0LM50 CRISPR-associated helicase, Cas3 family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LM50_SYNFM Length = 854 Score = 461 bits (1185), Expect = e-128, Method: Composition-based stats. Identities = 223/906 (24%), Positives = 350/906 (38%), Gaps = 88/906 (9%) Query: 5 KYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVA-DCWWDQSVVLQNTFCRNEMLSKQRV 63 + + +WGK+S GN +H + H LD VA + Q + ++ + Sbjct: 4 EDVFRFWGKTS-----GNVVHPAVCHMLDTGIVACELLMVQPHGFISKLADEFGITTDAL 58 Query: 64 KAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFN 123 F ALHDIGK FQ K + L + H + L Sbjct: 59 PQLAAFLAALHDIGKISPGFQAKRPDLSAPLKLEGYVFSRADED-----RHTLSTLETLP 113 Query: 124 QDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASY 183 + D A+ HHG + Sbjct: 114 DLLIDCLQCEDSL------------AIALSRALAAHHGVFTGQ-----------EAQKVG 150 Query: 184 AAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFN 243 A + +AR + L LF + + +LAG S++DWL S +L Sbjct: 151 AGKWIKARRAALEFLSRLFWDKSLTGLGFPSTPALVILAGLVSVSDWLSSAEENFPYLTC 210 Query: 244 EDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDAL 303 LR Y DR Q A ++ + H L D P Q + Sbjct: 211 PR-----PDLREYVADRTQKARELVSRLRFDVSSPAATEFHQLFDF-TSPNPSQTVTLQT 264 Query: 304 PVA---PGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEAS 360 P L VIE+P GSGKTE A A L + + +ALPTQAT NAML R Sbjct: 265 VNELHHPMLVVIESPMGSGKTEAAQAVYAHLSCEAGLRGMYYALPTQATGNAMLPRTARF 324 Query: 361 ASHLFSSP--NLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQ 418 + L L L H N+ N ++ ++ ++ E V W + + K+ L Sbjct: 325 LTRLGLETGTELHLLHTNADLNQDYERLRISSL---NAEPGDVSASSWFT-ARKRGLLAA 380 Query: 419 IGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGS 478 GV T+DQ L++ L V+H F+R G+ +L++DEVHAYD YM + ++ A S Sbjct: 381 HGVGTLDQALLAALKVRHFFVRLFGLAGKLLVLDEVHAYDAYMVEEIYRLIGWLAHCHTS 440 Query: 479 VILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRF 538 V+LLSATLP +++KL+ + + V ++ YP + ++GA AHP + Sbjct: 441 VVLLSATLPKARRKKLIQAFRPEVE-VPDDIRYPCVTGVDISGA----FAAHPIEGLKPD 495 Query: 539 SIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDID 598 +I EP+ +L ++ G I N V AQ ++ L+ ++ Sbjct: 496 TIYVEPVIAESTDKPARILSLLLEKLADGGCAACIMNTVGEAQDLHELLRHHFPAD-EVL 554 Query: 599 LFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADL 658 LFH+RFTL + E+ ++S + +GKR I++ATQV+EQSLDVDFD +IT P DL Sbjct: 555 LFHSRFTLERKLRIEHDILSRYASDGKRPHRGIVIATQVIEQSLDVDFDLMITDLAPIDL 614 Query: 659 LFQRLGRLHRHHRKYRPAGFEIPVATILLPDGE----GYGRHEHIYSNVRVMWRTQQHI- 713 L QR GRLHRH + RP +L+P+ +G E++Y+ ++ +T Sbjct: 615 LLQRAGRLHRH-ERARPQLLRPRNLWVLMPEFRSRLPDFGGSEYVYTP-DILLKTALLFS 672 Query: 714 --EELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWA 771 E+L+ + P ++ +Y D PE + + E ++ +A Sbjct: 673 AEEDLSHLEVSIPTGVSALIECVYGDDF--PPEVPEHLLGPMRGWEAKRLGDETSQTFFA 730 Query: 772 EEYSLQ-----------------DNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVY 814 +L DND+ VTR ++ L+ + L Sbjct: 731 ACSALIEAKACLRDPDYLGQISMDNDDDCAIVTRLTRPNVMLVVV----ENGRCLTVADK 786 Query: 815 EDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYT 874 + N V + + LL + G ++Y Sbjct: 787 AEERKLFSSTVATDNTAIVKHFLAKEPPGEWADSPLLRHCRPLFVSGGKSVERP-DLSYD 845 Query: 875 GDEGMT 880 + G+ Sbjct: 846 DEFGLR 851 >UniRef50_Q1J371 CRISPR-associated helicase Cas3, core n=1 Tax=Deinococcus geothermalis DSM 11300 RepID=Q1J371_DEIGD Length = 971 Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats. Identities = 233/946 (24%), Positives = 351/946 (37%), Gaps = 114/946 (12%) Query: 7 ICHYWGKSSKSLTKG--NDIHLLIYHCLDVAAVA-DCWWDQSVVLQNTFCRNEMLSKQRV 63 W KS+K G ++ H LDVAA A + + + F + L ++ Sbjct: 22 ARTLWAKSAKKNADGTQGAWLPVLNHLLDVAACAAEILALEPPQTRMLFEADLGLEGEQA 81 Query: 64 KAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFN 123 AW L +ALHD+GK FQ AE ++PA L P HG Sbjct: 82 LAWTLALVALHDLGKASPAFQVLWAEGKDGVDPA---LRFPPDLRKPYAPHGVVTQAVLP 138 Query: 124 QDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASY 183 F P +AV HHG +D + R + + Sbjct: 139 D-------------FLTGLGWPRPLARAVADAVGCHHGLRAEDRDLNLPRAQTGDAR--- 182 Query: 184 AAQDKQAREEWISVLE--ALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFL 241 Q R E ++ A +++ P LAG S ADWLGS Sbjct: 183 ---WGQVRRELCRLVALGTGARHDAVPTLSSFSPAAFMRLAGLTSFADWLGSS---FPLP 236 Query: 242 FNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALL--------DNGYQP 293 D + + YF ++ A + L + E + AL D +QP Sbjct: 237 TQTDFSAYEDP-AAYFGRTRERARQTLAEIRWPAFAPLREELPALPEVFRYVVKDGAFQP 295 Query: 294 RQLQVLVDAL---PVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATA 350 R LQ + P L ++EAP G GKTE A +L + ALPTQAT Sbjct: 296 RPLQTKLAQALEGVSGPALVLVEAPMGEGKTEAAFYAHLQLQRAAGHRGMYVALPTQATG 355 Query: 351 NAMLTRMEASA--SHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEA----WVQCC 404 NAM R + P+L LAHG + N FQ+ R G V+ Sbjct: 356 NAMYERFAQFLAAQGRPTPPDLQLAHGGTLLNEKFQATIERTRNAPGDPAEAGGYSVRAE 415 Query: 405 QWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGL 464 +W + + K+ L + GV T+DQ L+ VL V H+F+R G+G V+++DEVHAYDTY + L Sbjct: 416 EWFT-NRKRALLSEYGVGTVDQALLGVLGVPHQFVRLWGLGNRVVVLDEVHAYDTYTSEL 474 Query: 465 LEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQR 524 + A++ +G SV+L+SATLP ++ LL +G+ P + YP + V G + Sbjct: 475 IAALVAWLRALGSSVVLMSATLPEASRRALLRAWGMEDAP---TADYPRLTVAPVGGKVQ 531 Query: 525 FDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVC- 583 + +++ + + + A G V +I N V AQ Sbjct: 532 TLTIPDQDEVGNTSRPRQHVTLRPLGSEVGEVARHAVDLAADGGCVAVIVNTVARAQAVQ 591 Query: 584 YQRLKELNNTQVD----------------IDLFHARFTLNDRREKENRVISNFGKNGKRN 627 + L EL + + L+HAR+ ++R E+E RV+ GK G+R Sbjct: 592 TEVLAELERRGITARTCTRGGGGDPRAVGVLLYHARYPADERGEREKRVLRYLGKEGQRP 651 Query: 628 VGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRK-YRPAGFEIPVATI- 685 IL+ATQV EQSLD D D ++T P DL+ QR GRLHRH + G E V + Sbjct: 652 TRFILIATQVAEQSLDFDADVMLTDLAPVDLVLQRAGRLHRHAENAGKRRGHEEAVLFVS 711 Query: 686 ---LLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEM-- 740 PD +++R+ + L PD + + +Y Sbjct: 712 GLDEWPDESLKREFWGRVYAPALLYRSWLTLRRRLAGGLTLPDDLDELVQEVYAPEFAAP 771 Query: 741 DEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQD---------------------- 778 + + E+ +R +A D Sbjct: 772 ELTPEQREQLAAAEAVLDNQRGNEATTGSFAHIGCPADFWSTRLHHHPDADPDSESVSDD 831 Query: 779 -----NDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHE----------QQY 823 +E TR GE S+ ++P + G + + E ++ Sbjct: 832 PTAVGAEEDDFPRTRLGEESVRIVPVERREDGVWRVCRSPFWARDAEDVLPRFGTLDKRD 891 Query: 824 EALALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSI 869 A R E G LW EG + W+ + + Sbjct: 892 TEHARKIYRRSLGVSRPELVRAAEQGTLW-EGSLGTEHRGWRAHPL 936 >UniRef50_A7BA68 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BA68_9ACTO Length = 961 Score = 460 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 187/797 (23%), Positives = 311/797 (39%), Gaps = 73/797 (9%) Query: 7 ICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTF--CRNEMLSKQRVK 64 +W KS ++ H +D A VA +D + + + + + Sbjct: 2 ARSFWAKS----GDSGSWLSVVQHLMDAADVAGLLFDDYLSEHHRRLMASVWGGDRAKAR 57 Query: 65 AWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKF-NHGAAGLYWFN 123 A +F +HD GK +F + + + + + R F HG + Sbjct: 58 ASFVFLAGVHDAGKVSPQFACQRQDLAQLIRSEGLVVMRKADYAERSFLPHGLVSQFALQ 117 Query: 124 QDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHS--QDQDKSRWEMPASLA 181 ++ A W V HHG + + +++ Sbjct: 118 EEIA-------------AGGGDGSRALQWAILVGVHHGRYPDAGAVYVARQQYKTQEGSR 164 Query: 182 SYAAQDKQAREEWISVLEALFLTP---AGLSINDIPPDCSSLLAGFCSLADWLGSWTTTN 238 + Q R E + + A P G ++ ++P +S A +ADWL S Sbjct: 165 EDDPRWGQVRSEILRWMAARSGFPLVAPGTALPELPIAVASAYASALVIADWLASNEDYF 224 Query: 239 TFLFNEDAPSDINALRTY----FQDRQQDASRVLELSGLVSNKRC----------YEGVH 284 + ++ Y ++ R + + + R + Sbjct: 225 PLRPRPVDEAGKLSIDGYPELTADQQRDRVRRAWKRAAFPTPLRISTTPSDEVTDFYRHR 284 Query: 285 ALLDNGYQPRQLQVLVDALP--VAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIF 342 + Y+P + Q + P L ++EAP GSGKTE A A A L+ + V Sbjct: 285 FGWPDTYRPTEAQRAAIEIATGEDPDLMIVEAPPGSGKTELAFAAAEVLMRARGLQGVFV 344 Query: 343 ALPTQATANAMLTRMEASASHLFSSP----NLILAHGNSRFNHLFQSIKSRAIT----EQ 394 ALPTQAT NAM R+ A + + + LAHG + N F + +R + Sbjct: 345 ALPTQATTNAMFERVTAWLTSILGDEPQKLGIQLAHGRNSLNESFVKLLARGKSPLEVHD 404 Query: 395 GQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEV 454 +E+ + +W+ Q + + V TIDQVL++ L +H +R +G+ V+++DEV Sbjct: 405 DEEDLGLYASRWMGQRWRSTLSP-VVVGTIDQVLLAALKSRHVLVRHIGLMGKVVVIDEV 463 Query: 455 HAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLH-------TDPVEN 507 HA D YM LEA L G V+LLSATLP ++ LL+ Y + V+ Sbjct: 464 HAADEYMETYLEAALTWLGMYGIPVVLLSATLPPARRLALLNAYRRGCGSSGVSAESVDV 523 Query: 508 NSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAG 567 YP I+ G + +++ E I + + E + G Sbjct: 524 MIGYPAISTVSAAGVRVHEVVGEAEVPKR--------IIPTSLGSPQEIAELLDRELADG 575 Query: 568 AQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGK-R 626 +I N V AQ Y+ ++ + + L H+RF +R ++ R++ FGK+ + R Sbjct: 576 GCAVVIRNTVRDAQETYEAVRSVFGREQS-TLLHSRFLAVERAARDRRMLELFGKDSQQR 634 Query: 627 NVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATIL 686 ++VATQV+EQSLDVDFD ++T P DL+ QR+GRLHRH R RP+G ++ Sbjct: 635 PFRHVVVATQVIEQSLDVDFDLMLTDPAPMDLVLQRIGRLHRHERDGRPSGLHDARCLVI 694 Query: 687 LPD-----GEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMD 741 + D +++Y+ V+ RT I + + P Y + Y D Sbjct: 695 IDDTTSSPWTYSRGTDYVYARYAVL-RTLAIIADREEILVREPLEYEELTTQAYADDVPV 753 Query: 742 EPEWVGNGMDKFESAEC 758 P +D Sbjct: 754 GPAQWHEALDAALEERN 770 >UniRef50_C7MQD2 CRISPR-associated helicase Cas3 n=1 Tax=Saccharomonospora viridis DSM 43017 RepID=C7MQD2_SACVD Length = 832 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 207/855 (24%), Positives = 313/855 (36%), Gaps = 65/855 (7%) Query: 7 ICHYWGKSS--KSLTKGNDIHLLIYHCLDVAAVADCWWDQS--VVLQNTFCRNEMLSKQR 62 + WGK ++ + L+ H D AA A W+ ++ ++ Sbjct: 1 MQAPWGKRRGLEAADGSPREYPLVCHLCDTAAAALVLWEDHTAPGVREWVANELDMTPHE 60 Query: 63 VKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWF 122 ++ + LHDIGK FQ + + H A Sbjct: 61 AGRFIAYLAGLHDIGKTTPGFQCQ---------------DSTDKNSVDTIRHEIASYLAV 105 Query: 123 NQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLAS 182 + F S E + GHHG + + +P Sbjct: 106 PTLIEHPEKPASFIS---------GIAHRIGEILGGHHGVFPPVDRRTRKPLHVPELG-- 154 Query: 183 YAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLF 242 + AR + L A +P ++ L G +ADW+ S Sbjct: 155 -GPEWDTARRTIHTELRAHLNP---TLPTCLPQPVAAALTGLVIVADWIVSDARW-ILES 209 Query: 243 NEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDA 302 DAP I A + + + L L+ + + P Q ++ D Sbjct: 210 QWDAPIGIAARWEHTLNATRARVHQLGLAHPTPGPLDLARILGGPNRSPNPLQQSIIDDF 269 Query: 303 LPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASAS 362 P PGL I PTGSGKTETA A KL + LPTQAT N+M R A+ Sbjct: 270 HPTGPGLLTIATPTGSGKTETAWIAAHKLATATDRYGTLMCLPTQATTNSMWARTSATV- 328 Query: 363 HLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVC 422 + LAH + F+ ++ + K+ L V Sbjct: 329 ----DNTVTLAHSMAVFHSPYRHYSTHDPD-----------ALRWLNGRKRPMLSAHAVV 373 Query: 423 TIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILL 482 TIDQ+L + L KH +R + V+IVDEVHA D YM +L VL+ +G V+LL Sbjct: 374 TIDQLLAAGLTAKHNMVRQWALTGKVVIVDEVHACDIYMLTVLARVLEWLGRLGVPVVLL 433 Query: 483 SATLPMKQKQKLLDTY---GLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFS 539 SATLP ++L Y + P AYP W + G+ + + Sbjct: 434 SATLPGHVSRQLTAAYLTGAGCSSPNPRPVAYPGWVWHPITGSP-VEPRNRAQISRAHAR 492 Query: 540 IQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDL 599 + + + A G ++C+ VD AQ Y R+++ + + L Sbjct: 493 TARVTVTHYTGPVEAAAANAIQPVAKNGGCAAVVCSTVDTAQRIYIRIRDTYP-GMCVWL 551 Query: 600 FHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLL 659 H+RF R E E ++S FG G R G ++VAT V+EQSLDVDFD +I++ P LL Sbjct: 552 LHSRFPHAHRAEIEADIVSMFGPAGDRPDG-VVVATSVIEQSLDVDFDVMISELAPVALL 610 Query: 660 FQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNV-RVMWRTQQHIEELNG 718 FQRLGR+ RH RPA P IL DG IY + R + T+ + G Sbjct: 611 FQRLGRVWRHD-NPRPAWATEPTLHILDRDGALPYGPAAIYRDSLRELRATRAALAGH-G 668 Query: 719 ASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQD 778 + P+ + +++ D + + L E + D Sbjct: 669 TLIRIPEDVSTLVQQVHNRDLDDLNDLQSQRERRDAGLANIVAIPNPHQLGHLETMTCPD 728 Query: 779 NDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQ---VYEDLSHEQQYEALALN-RVNVP 834 D+ +A R G ++ L+P G+ LD + Y ++ ALN + P Sbjct: 729 VDDATVAA-RLGMDTIRLIPAHIGIDGRYYLDPKHEIPYPQGRPPHRFVEAALNASITCP 787 Query: 835 FTWKRSFSEVVDEDG 849 W R + D G Sbjct: 788 AHWVRDWPTNPDWAG 802 >UniRef50_Q2RY15 CRISPR-associated helicase, Cas3 family n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RY15_RHORT Length = 920 Score = 458 bits (1178), Expect = e-127, Method: Composition-based stats. Identities = 261/866 (30%), Positives = 373/866 (43%), Gaps = 73/866 (8%) Query: 1 MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSK 60 M ++I YWGK+ + G H L YH LDVAA D L N R LS Sbjct: 28 MTLPRWILGYWGKARPARADGPAWHPLAYHGLDVAAAMAALLDLRPALLNAIARAAGLSP 87 Query: 61 QRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLY 120 Q + L+ A HD+GKF FQ K + PA P + G S + HG GL Sbjct: 88 QDARRALILLAAFHDLGKFAENFQQKVE--IPGIIPAAPGVIGSSQRG-----HGGVGLR 140 Query: 121 WFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASL 180 + + + + W++A GHHG + S+ + P Sbjct: 141 LWETAVQAGPAPLSVIAA---------RLGQWIDAAFGHHGAPVESKGFHLAEALSP--- 188 Query: 181 ASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTF 240 AR++ ++ + + D +AG LADW+GS T + Sbjct: 189 --------AARDDALAFVNDCLGFLPMPEASVDGADEIWQVAGLLILADWIGSNQTWFPY 240 Query: 241 LFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNK-RCYEGVHALLDNGYQPRQLQVL 299 + +L Y+Q Q +A L + L + L+ +P LQ Sbjct: 241 APPDS------SLEAYWQKAQGNAKDALAKAALREAPIAPGLDLSDLIGPQARPSPLQRF 294 Query: 300 VDALP--VAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRM 357 A P L +IE TGSGKTE AL A +L+ A+ + +ALP++ATANA+ R+ Sbjct: 295 AAAEAPPREPTLYIIEDLTGSGKTEAALLLAHRLMAAGQAEGLYWALPSKATANALYARL 354 Query: 358 EASASHLFS-----SPNLILAHGNSRFNHLFQSIKSRAITEQGQE------EAWVQCCQW 406 A LF SP ++LAHG+ N LF + G+ A QC + Sbjct: 355 AAVYRRLFQPDTDISPWIVLAHGDRDLNPLFADSRRPGGEYYGETRLADEQSAEAQCAAF 414 Query: 407 LSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLE 466 L+ KK FLGQIG+ TIDQ L+SVLPV+H+ +R + R VL+VDE HAYD Y+ L Sbjct: 415 LADDMKKTFLGQIGIGTIDQALLSVLPVRHQSLRICALSRRVLVVDEAHAYDDYVQAELA 474 Query: 467 AVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFD 526 +L+ + +GGS I+LSATL Q++ L Y N+ + R Sbjct: 475 RLLEFHSALGGSAIVLSATLTKSQRRDLCRRYQRTRGGDLPNAGAVKLTEDAFPLVTRVS 534 Query: 527 LLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQR 586 + E + LE +I AA+AG I N V A QR Sbjct: 535 AQSLVETPQDAARGTRRDLPFRLFSTVDQALESLIDAASAGLCGVYIRNTVTDAIAAVQR 594 Query: 587 LKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGK--RNVGRILVATQVVEQSLDV 644 L+ L VD+ LFHARF L DR EN + FGKN GRILVATQVVEQSLDV Sbjct: 595 LRALAPPGVDVALFHARFALGDRLAHENNALGRFGKNSTPDDRRGRILVATQVVEQSLDV 654 Query: 645 DFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEG----------YG 694 DFD ++T CP DLL QR GRLHRH + PV +++ P EG + Sbjct: 655 DFDVMVTDLCPMDLLIQRAGRLHRHADRP---SRPPPVLSVVAPPTEGAITAQWYAALFP 711 Query: 695 RHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGN-GMDKF 753 + + +Y +V +WRT ++E G L + R +++++ D+ P + Sbjct: 712 QGQFVYRDVGQLWRTLSVLKERGGLPLLS-ASPRLLIEAVFGDSAAPLPPTLEQPSFKAE 770 Query: 754 ESAECEKRFKARKVLQWAEEYSLQDN--DETILAVTRDGEMSLPLLPYVQTSSGKQLLDG 811 + E+ L+ + YS Q + A TR G+ + L + G Sbjct: 771 GKRQAERAVGYVVSLERSAGYSQQVDAWKTETQATTRLGDQGIRLRLA-------RWQKG 823 Query: 812 QVYEDLSHEQQYEALALNRVNVPFTW 837 Q+ + A L+ V+V + Sbjct: 824 QLRPWFDDPDPWRAWRLSEVSVRRGF 849 >UniRef50_D1A6Q2 CRISPR-associated helicase Cas3 n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1A6Q2_THECD Length = 933 Score = 457 bits (1176), Expect = e-127, Method: Composition-based stats. Identities = 206/950 (21%), Positives = 337/950 (35%), Gaps = 94/950 (9%) Query: 11 WGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSK--QRVKAWLL 68 WGK + ++ H +D AA+A WD + + + +++ + Sbjct: 2 WGKRDGLPGP----YPVVCHLIDTAAIAGALWDVWTAGLGVLRADVLGERVAAHMRSLVC 57 Query: 69 FFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLS 128 F+ LHDIGK FQ + + KL T + + H + + + Sbjct: 58 FWAGLHDIGKVSPSFQVLVGDLYQKL--VTEASEYEQDEAISGLRHNEVTQWVLVEIFRA 115 Query: 129 EQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDK 188 + A + + + GHHG + + + R ++ Sbjct: 116 -------LGYPAADSARRDVGHQIAQLLGGHHGRFCAAMRRPELRAPRSRPGVGRGVWEE 168 Query: 189 QAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNT-FLFNEDAP 247 Q R + + +P + ++ G +ADWL S + + E Sbjct: 169 QCRAHA--AVLRELTGAREVLRERLPVPVAVVVLGIVIVADWLASQESFIVARMPGEGWE 226 Query: 248 SDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVD----AL 303 + LR +++ DA +V+ +GL L +P LQ V L Sbjct: 227 ASPEELRAHWERAVADAPQVVRDAGLGRGLLEDRTFRELFGFD-EPNPLQASVMKELPEL 285 Query: 304 PVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASH 363 PGL + AP G GKTE AL A L A+ + F LPT AT +AM R+ A Sbjct: 286 VNGPGLVLCTAPPGDGKTEAALYAAGVLARACGANGLGFCLPTMATTDAMHKRVSRFARR 345 Query: 364 LFSSPN-LILAHGNSRFNHLFQSIKSRAITEQ----GQEEAWVQCCQWLSQSNKKVFLGQ 418 L H + + + EA + QWL + L Sbjct: 346 ALREDAALTKVHSMAWLSSDAAGDAAAGAAGGDAVITDAEASTEAAQWLHAGR-RGLLAP 404 Query: 419 IGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGS 478 + TIDQ L VLPVK+ +R + + V+++DE H+YD +M+ LL L+ + Sbjct: 405 LTTFTIDQGLTGVLPVKYNVLRLMAMAGKVVVIDEAHSYDAWMHALLLRWLEWLGALRAP 464 Query: 479 VILLSATLPMKQKQKLLDTY---GLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLP 535 VILLSATL + L++ Y HT P E YP + + Sbjct: 465 VILLSATLTGAAARSLVEAYLRGAGHTVPQELRPCYPGWLFADAVTGTVHPPREVTSERE 524 Query: 536 PRFSIQPEPICLA----DMLPDLTMLERMIAAANAG--AQVCLICNLVDVAQVCYQRL-- 587 + + P+ L +++ ++A G V + C V AQ Y+ L Sbjct: 525 RAVAFEMVPVRRGKDPSRPGHRLAVIKDLLAQVVNGDRGCVLVCCTTVPEAQDTYRYLAD 584 Query: 588 -----KELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSL 642 E ++ L H+R+ DR +FGK G R +LVATQ+VEQSL Sbjct: 585 WFRRVAEEGGRPPELRLLHSRYRARDRAAITEACERDFGKEGGRPR-TVLVATQIVEQSL 643 Query: 643 DVDFDWLITQHCPADLLFQRLGRLHRHH-------RKYRPAGF-EIPVATILLPDGE--- 691 D+DFD LIT P LL QR GR RH R+ RP P +L P + Sbjct: 644 DLDFDLLITDLAPMALLLQRSGRCQRHRDGRIDLHRERRPDWAGAAPRVIVLNPVDDQGE 703 Query: 692 -GYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGM 750 + ++ RT + + + P + +D++Y + Sbjct: 704 FAVPEEWGGVYDESLLHRTSRLLHARGAEPVQIPGDVQALVDAVYAEDFTSVVALDEANA 763 Query: 751 DKFESAECEK---RFKARKVLQWAEEYSLQDND--------------ETILAVTRDGEMS 793 + A+ E+ R+ S +D + TR G S Sbjct: 764 RRIVRADGERLGGEAAQRQTADLVMICSPRDGKLRDLRNLSEAQAKVSSAWLTTRLGADS 823 Query: 794 LPLLPYVQ--------TSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVV 845 L+ + +G+ + G Q +A + VP + +E++ Sbjct: 824 ERLVCVYEQSPGVWTLDETGRIPVPGMEGRSRVTRDQARLIAEYMIPVPGRYCGEEAELL 883 Query: 846 D-----------EDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMTRVIP 884 + D L + + GW + +TY + G+ + P Sbjct: 884 EPPPSWDKNAVLRDWKLLPMRRASDGGWYGRLRPGQVTYQANVGLQMLYP 933 >UniRef50_B5ZCG0 CRISPR-associated helicase Cas3 n=2 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=B5ZCG0_GLUDA Length = 897 Score = 457 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 260/936 (27%), Positives = 388/936 (41%), Gaps = 107/936 (11%) Query: 10 YWGKSSKSLTKGND----IHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKA 65 +WGK+ +G +H LI H LDVAAVA + L + Sbjct: 9 FWGKARAVPAEGAMIGPVMHPLIAHMLDVAAVAVLLPEN---------AKCGLD----RR 55 Query: 66 WLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQD 125 L +ALHDIGK FQ K W L G ++ F H AAGL Sbjct: 56 QLGLLVALHDIGKLMPAFQAKVEICWP-----EAILGGFPVELVPCF-HDAAGLALL-DL 108 Query: 126 SLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAA 185 + + F + D + AV GHHG + +QD++ + A Sbjct: 109 MVDDVLAALFANGQDGKCWRLTHKLKLLRAVAGHHGQPVSAQDRN-----------TLAP 157 Query: 186 QDKQAREEWISVLEALFLTPAGLSI-NDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNE 244 + +++L +F P L +D +LA ADW+GS ++ E Sbjct: 158 DTIERARTLVALLFDVFRPPPILRPGDDTLRRLEWMLARVTIQADWIGSQQEWFPYVTPE 217 Query: 245 DAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVD--A 302 + R Q A L +V + G L D+ +P +Q L++ Sbjct: 218 SVADPSGYFWNHALPRAQSAIHRAGLGPMVGAP--FAGTAGLFDHIREPSPMQALLETLP 275 Query: 303 LPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASAS 362 +P P L VIE TGSGKTE AL A +LI + + ALPT ATANAM R+ A+ Sbjct: 276 VPSGPVLVVIEDATGSGKTEAALVMAQRLIAAGRSSGLFVALPTMATANAMYDRLAAAYR 335 Query: 363 HLFS---SPNLILAHGNSRFNHLFQSIKSRAITEQG-------QEEAWVQCCQWLSQSNK 412 LF P+L LAHG +R + F + + E A C WL ++ Sbjct: 336 RLFQPSARPSLALAHGRARLDERFAAALAPDDGSDAFPDARIMDETAEAYCAAWLGSESR 395 Query: 413 KVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQ 472 + + Q+GV TIDQ L++VLPV+ +R G+ +LIVDE HA+D YM + A+L+ Sbjct: 396 RALMAQVGVGTIDQALMAVLPVRFATVRHAGLAGKILIVDECHAFDPYMRREMVALLRFH 455 Query: 473 ADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVEN----NSAYPLINWRGVNGAQRFDLL 528 A +GGS +LLSATL + +Q+L + + D V+ +AYPL+ G GA+ + Sbjct: 456 AAMGGSALLLSATLTQRIRQELTNAFRSGLDTVDPAPLSGTAYPLVTLVGKAGAEEYPCA 515 Query: 529 AHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLK 588 P I + + +IAAA AGA V I N VD + L+ Sbjct: 516 LRPG--------LARSIAVRRLADTDAASREVIAAAAAGAAVAWIRNTVDEVIATARFLR 567 Query: 589 ELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGK-RNVGRILVATQVVEQSLDVDFD 647 V++ +FHARF + DR E V++ FGKN + +LVA+QV+EQSLD+DFD Sbjct: 568 AQ---GVELLVFHARFAMVDRLAIERDVLARFGKNKETTGRSAVLVASQVIEQSLDLDFD 624 Query: 648 WLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVAT----ILLPDGEGYGR----HEHI 699 L+T P D + QR GRL RH R RP E + + PD R + Sbjct: 625 VLVTDLAPMDQVIQRAGRLRRHDRIARPVDREELLVISPEPVAEPDPSWVRRVLPGTAAV 684 Query: 700 YSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYD-DAEMDEPEWVGNGM-DKFESAE 757 Y + ++WRT + + + P R ++ D DA P+ + G D A Sbjct: 685 YRDPALLWRTARTLFRY--GRIESPGRIRALIEEAGDADAPGAVPDGLAAGSTDAMGKAL 742 Query: 758 CEKRFKARKVLQWAEEYSLQDN--DETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYE 815 R VL + Y + TR ++ + G+ L + Sbjct: 743 AAGFAADRNVLSFDAGYVADGALWEREARTPTRLEDLPYVTVRLAVMQDGRVLPWAAKID 802 Query: 816 -------DLSHEQQYEALALNRVNV-----PFTWKRSFSEVV---------DEDGLLWLE 854 + +++ + + P +R + DE +L L Sbjct: 803 PGLACAGEHRRAWALSEVSVAQYRLARCPPPPGLERVVAAARAEWPRWEREDESSVLLLI 862 Query: 855 GKQNLDGWVW-----QGNSIVITYTGDEGMTRVIPA 885 ++ +GW G+ +VI Y G+ V+PA Sbjct: 863 LQKMEEGWRGAGQIETGHEVVIGYDRTYGL-EVVPA 897 >UniRef50_B8IMR6 CRISPR-associated helicase Cas3 n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IMR6_METNO Length = 897 Score = 456 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 251/922 (27%), Positives = 377/922 (40%), Gaps = 76/922 (8%) Query: 6 YICHYWGKSSKSLTK-GNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVK 64 +WGK+ S G H + H LDVAA T + + ++ Sbjct: 3 TFQTFWGKARPSKRSIGPRFHPVWAHSLDVAASGLALIRARPQAFMTLAQQLGWELEALR 62 Query: 65 AWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQ 124 A L +ALHDIGKF FQ + + P H AG Sbjct: 63 ALWLHLLALHDIGKFSPLFQAAAPHCYPHCQIPWPE---DVVLKNLDPGHPTAGFVLLRD 119 Query: 125 DSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYA 184 + GD + +E + GHHG D+ + + + + Sbjct: 120 WIDDGATPGDAPPLCAGWDWGETTL--LLEPILGHHGRPAAGPDRRRGWGHLFRPVGAAH 177 Query: 185 AQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNE 244 A A W +V L + S LAG +LADW+GS + + + Sbjct: 178 A----AFAYWRAVAALLPVPDLPPPSEAQLKAVSWRLAGLTALADWIGSDQSHFPYTAPD 233 Query: 245 DAPSDINALRTYFQDRQQDASRVLELSGL-VSNKRCYEGVHALLDNGYQPRQLQVLVDAL 303 LRTY++ A + GL + AL P Q + Sbjct: 234 T------DLRTYWEAAIAQAEGAVAAFGLVPAAPGPRLSFSALTGVTCPPSAAQSWATEV 287 Query: 304 PVAPGLTVIEAP--TGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASA 361 + G +I TG GKTE AL A +L+ A + ALPT ATANAM +R+ A Sbjct: 288 ALPDGPLLIIVEDVTGGGKTEAALMLAHRLLADGRARGLFLALPTMATANAMFSRVREIA 347 Query: 362 SHLFSS---PNLILAHGNSRFNHLFQSIKSRAI-------TEQGQEEAWVQCCQWLSQSN 411 LF P+L LAHG + + F+S+ A +G++++ WL + Sbjct: 348 PRLFGEGAKPSLTLAHGAATLHPAFRSVPVPAAPGAAPAGEREGEQDSAAVAAGWLMGES 407 Query: 412 KKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKA 471 ++ L +GV TIDQVL+SVLP +++ +R G+ VL+VDE H+YD Y+ LE ++ Sbjct: 408 RRALLADLGVGTIDQVLLSVLPARYQAVRLAGLADKVLLVDEAHSYDAYVGTELERLVAF 467 Query: 472 QADVGGSVILLSATLPMKQKQKLLDTYGLHT---DPVENNSAYPLINWRGVNGAQRFDLL 528 A GGS I+LSATLP K +L+ + + YP+ G+ L Sbjct: 468 HAAGGGSTIILSATLPRTVKDRLVAAWRGAVGDGGAPLKQAHYPVATLVARAGSPVEKRL 527 Query: 529 AHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLK 588 +L ++ P + LER+ AA AGA V + N VD A L+ Sbjct: 528 HARPELRRNLTVTRVPNPS-------SALERIRAAVAAGACVAYVRNTVDDAIETAAVLR 580 Query: 589 ELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNG--KRNVGRILVATQVVEQSLDVDF 646 + + DLFHARF ++DR E RV++ FGK+ + GR+LVATQV+EQSLD+DF Sbjct: 581 Q---AGIPADLFHARFAMHDRLAIEERVLATFGKSSQPEDRRGRVLVATQVLEQSLDLDF 637 Query: 647 DWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEG----------YGRH 696 D +++ P D L QR GRL RH RP P I+ PD G R Sbjct: 638 DLIVSDLAPIDALLQRAGRLWRH--AGRPRSVSGPELVIVSPDPAGSVSADWVGAALRRT 695 Query: 697 EHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDK-FES 755 +Y++ ++WRT + + A+ P R ++++Y + + D PE + D+ Sbjct: 696 AFVYTDPAILWRTARTL--FASATFNVPRDVRSAIEAVYAENKGDVPEVLLAASDEQHGR 753 Query: 756 AECEKRFKARKVLQWAEEYSLQDN--DETILAVTRDGEMSLPLLPYVQTSSGKQLL---- 809 A E+ F + +L + Y + VTR E + L + Sbjct: 754 AGAERAFADQNLLDHRDGYRADGKAWQQERQVVTRLAEAARVLRLARRDGERLVPWAQDP 813 Query: 810 DGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVV------DEDGLLWLEGKQNLDGWV 863 D LS + YE + R W+ V DED +L +Q + W Sbjct: 814 DPSTAWSLSEVKAYERVLRGRHQAEVRWRSLVDAVRVGWSRFDEDVILLPLERQQGEAWA 873 Query: 864 W-----QGNSIVITYTGDEGMT 880 +G ++ TY+ EG+ Sbjct: 874 GVLVDDEGQAVNFTYSVAEGLR 895 >UniRef50_Q53VY2 Putative uncharacterized protein TTHB187 n=1 Tax=Thermus thermophilus HB8 RepID=Q53VY2_THET8 Length = 920 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 231/966 (23%), Positives = 363/966 (37%), Gaps = 132/966 (13%) Query: 1 MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWD-QSVVLQNTFCRNEMLS 59 M + W KS GN H L+ H LD AAVA + + + + L Sbjct: 1 MSVEEAALALWAKS------GNPFHPLLAHMLDTAAVALAVLRMEPPRTRALYAEDWGLP 54 Query: 60 KQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGL 119 ++ AW + LHD+GK FQ E ++ A P ++ HG Sbjct: 55 EEGALAWAAALVGLHDLGKASPVFQAGWEEGKERVQRAGL----PFGELLDWVAHGVFTE 110 Query: 120 YWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPAS 179 + + P + A+ HHGF +++++ ++R + Sbjct: 111 LFLRR-------------LLKEKGLPERAANDLAAALGAHHGFPANAEEKSRARRHLRTE 157 Query: 180 LASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNT 239 + + EE L A P + P+ + S ADW+ S + Sbjct: 158 DPLWKEARRWLLEEVFRRLGAPL--PPSQGNGEARPEAVLRVMALASFADWVASDPSLFP 215 Query: 240 FLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVH-ALLDNGYQPRQLQV 298 + + Y ++ + A L G + + L +P LQ Sbjct: 216 YGRDPRRG-------DYLKEALRLAQEALNRLGWPAFAKAQRREFGELFPYIPKPNALQE 268 Query: 299 LVDALPVA---PGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLT 355 V AL P L ++EAP G GKTE AL L + ALPTQATAN + Sbjct: 269 SVPALLEGACTPVLLLVEAPMGMGKTEAALYAHHLLQAGLGHRGLYVALPTQATANGLFP 328 Query: 356 RMEASASHLFSSP--NLILAHGNSRFNHLFQSIKSRAITEQ--GQEEAWVQCCQWLSQSN 411 R+ L L L HG + N + + RA Q +EE W S + Sbjct: 329 RVRGFLERLGEGSRLELQLQHGTALLNPHYAGLLERAAPRQVGEEEEGGAVASAWFS-AR 387 Query: 412 KKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKA 471 K+ L GV T+DQ L+ VL VKH F+R G+ V+++DEVHAYD Y +GLL+A+L+ Sbjct: 388 KRAMLAPYGVGTLDQALLGVLRVKHHFVRLWGLMNRVVVLDEVHAYDVYTSGLLQALLRW 447 Query: 472 QADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHP 531 +G S ++++ATLP +++ LL+ + ++ YP + G R A Sbjct: 448 LRALGSSAVVMTATLPPSRRRALLEAWAGEEVEGQDLGPYPRVVLVGEGVKARSLPPARE 507 Query: 532 EQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELN 591 ++ + + LA L V I N VD AQ Y+ L E Sbjct: 508 VEVALEVLREVDVEPLAQRLKGALP-----------GAVGAIVNTVDRAQDLYRALGEGT 556 Query: 592 N---------------------------------------TQVDIDLFHARFTLNDRREK 612 + L HARF +R + Sbjct: 557 PLTLEELARRLGGISGGQAWEEVRQALPERGGEVVGKVLTDGTLVFLLHARFPAEERALR 616 Query: 613 ENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRK 672 + V++ FGK G R ILVATQV EQSLD+DFD L T P DLLFQR GRLHRH + Sbjct: 617 GSVVLALFGKGGPRPPRAILVATQVAEQSLDLDFDLLYTDLAPIDLLFQRSGRLHRH-ER 675 Query: 673 YRPAGFEIPVATILLPDGEGYG---RHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQ 729 RP P + +P+ +G + +Y + V+ T + + + L P Sbjct: 676 PRPEEHARPRLLLGVPEDLDFGKPLYWDKVYEDY-VLLATWRALSGRD--RLRVPGDLEA 732 Query: 730 WLDSIYDDAEMDE-PEWVGNGMDKFESAECEKRFKARKVLQWAE---------------- 772 L+ IY+ + PE + K A E+R + + Sbjct: 733 LLEEIYEGENPESFPEGLRERAKKSLKALQERRDREANTARRLSLSELDRLLAYWDEGAL 792 Query: 773 --EYSLQDNDETI---LAVTRDGEMSLPLLPYVQTSSG---------KQLLDGQVYEDLS 818 + L+D++E +TR G+ S+ ++P + G + L G+V + + Sbjct: 793 VAQERLEDDEEKAETQRLLTRLGDPSVAVVPLFRVGEGLFLDREGRRRAPLKGEVSREEA 852 Query: 819 HEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLW--LEGKQNLDGWVWQGNSIVITYTGD 876 A+ L+R +P + L L + + + + + Sbjct: 853 EALFRRAVRLSRFPLPQELLKEEPPPAWRKSGLLRGLRPLEVGRVFRSGERAFQVELDPE 912 Query: 877 EGMTRV 882 G+ + Sbjct: 913 LGVVYL 918 >UniRef50_C1DSH5 CRISPR-associated helicase Cas3, core n=3 Tax=Pseudomonadaceae RepID=C1DSH5_AZOVD Length = 901 Score = 453 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 212/879 (24%), Positives = 339/879 (38%), Gaps = 99/879 (11%) Query: 8 CHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQ-SVVLQNTFCRNEMLSKQRVKAW 66 W KS + H L+ H LDVAAVA+ ++ F L + Sbjct: 14 RALWAKSGEPGG-----HGLLAHMLDVAAVAETLLEREPPATHECFAAQFGLPESVFSRH 68 Query: 67 LLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDS 126 + LHD GK FQ K + PS ++ +H AG + Sbjct: 69 VAALAGLHDFGKAIPGFQAKWPAGRERDEAHGLGFAEPSLRV---TDHACAGAALLWRHL 125 Query: 127 LSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQ 186 ++ + + ++A+ HHG+ + + + A Sbjct: 126 PAQGAEPGW-------------IMGVLQAIGAHHGYNPSVPEIRTAVPALE------APG 166 Query: 187 DKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDA 246 AR+ + +++P + LAG S+ADW+ S Sbjct: 167 WAPARQALFEAYWQALAPEGVPAADELPLPAVAWLAGLTSVADWIASDPDWFP------P 220 Query: 247 PSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHAL--------LDNGYQPRQLQV 298 ++L +F+ + A++ LE G ++ G R LQV Sbjct: 221 GEREDSLAGHFRQAGKLAAKALEEIGWSPHRALLREPATTDELLGRIVRREGVAARSLQV 280 Query: 299 LVDAL---PVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLT 355 D L P L ++EAP G GKTE A +L + ALPTQA NA+ Sbjct: 281 EGDRLLSEARGPSLLLVEAPMGEGKTELAFLAHLRLQAANDHRGLYVALPTQAIGNALFD 340 Query: 356 RMEASASHLFSSP------------NLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQC 403 R ++ L HG + + Q ++ G + + Sbjct: 341 RALTFLRGFDDRQPLDRQPLDRQPLDIQLVHGGAALDERVQRLRD----IHGGTDDSIAS 396 Query: 404 CQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNG 463 W S ++ L GV T+DQ L + L VKH F+R G+ V+++DEVHAYD Y G Sbjct: 397 SAWFS-QRRRPLLSPYGVGTVDQALFAALNVKHHFVRLWGLANRVVVLDEVHAYDVYTGG 455 Query: 464 LLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQ 523 L+E++L+ +G SV+L+SATLP +++ LL +G+ T+ V YP + G + Sbjct: 456 LIESLLRWLRALGSSVVLMSATLPEQRRNALLQAWGVATERVPEL-PYPRLLLADGRGLR 514 Query: 524 RFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVC 583 + P S+ + + + + G LI N V AQ Sbjct: 515 ATTFDSRPLPPIALESLDEDL---------DDLAACALRLLDGGGHGALIVNTVARAQEL 565 Query: 584 YQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGK---RNVGRILVATQVVEQ 640 Y+RL+ + +V + LFHARF ++R +E +V+ FG G R +L+ATQV EQ Sbjct: 566 YRRLQPRLDEEVRLILFHARFPADERGMRERQVLEAFGNAGTDRPRPGRCLLIATQVAEQ 625 Query: 641 SLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIY 700 SLD+DFD+LIT P DL+ QR GRLHRH R+ R + D E Sbjct: 626 SLDIDFDFLITDLAPVDLILQRAGRLHRH-RRARVPAHAGARLFVAGLDPRRLPGLEKTV 684 Query: 701 SNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEM--DEPEWVGNGMD-----KF 753 ++ RT + G L P + + ++Y DA + D V ++ ++ Sbjct: 685 YEPYLLGRTWALLSRETG--LRLPWDIDRLVQAVYGDAPLPDDLDAQVRARIEVEIHGEY 742 Query: 754 ESAECEKRFKARKVL---------QWAEEYSLQDNDE--TILAVTRDGEMSLPLLPYVQT 802 + E+R KA + + ++ + E + TR G+ ++ L+P + Sbjct: 743 LARLKEERQKALNIAIDPSAAPQNAYLDKPRGNEEGEGPGLTKRTRLGDAAVALVPVYRV 802 Query: 803 SSGKQLLDGQVYEDLS---HEQQYEALALNRVNVPFTWK 838 G L D S + L R+ Sbjct: 803 PDGWSLRPDGEAFDPSLPLSDFLARQLHGRRMKCSHGLV 841 >UniRef50_B6XT60 Putative uncharacterized protein n=2 Tax=Bifidobacterium RepID=B6XT60_9BIFI Length = 1045 Score = 451 bits (1159), Expect = e-125, Method: Composition-based stats. Identities = 211/1012 (20%), Positives = 343/1012 (33%), Gaps = 164/1012 (16%) Query: 1 MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVV--LQNTFCRNEML 58 +E WGK+++ + L H D AA+A WD V ++ R+ Sbjct: 12 IELSDRAKSLWGKTNRV--DDTEWLPLYVHMADSAAMAVRIWDTWVPYGTKSIISRDLGN 69 Query: 59 SKQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAG 118 + ++F +HDIGK FQ K + P SL Q G Sbjct: 70 DDDLARKLMIFLAGVHDIGKATPVFQAK----PISFGPDAESLAWKPEQAGLPMIAGLRD 125 Query: 119 LYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPA 178 + L +FS + V GHHG + +R Sbjct: 126 TSHPTHPIAGQVILERYFSLVHKWGERESRQY--ACVVGGHHGTPPDKSKLESARLGKTE 183 Query: 179 SLASYAAQDKQAREEWISVLEALFLTPAGLSI---NDIPPDCSSLLAGFCSLADWLGSWT 235 S E + + + + + L G +ADW+ S + Sbjct: 184 SGLDSEVWTTTQNELIEFIAGTVGIGDEEWKLLSKKRFSAQSAVLATGLVIIADWIASNS 243 Query: 236 TTNTFLFNEDAPSDINA--------------LRTYFQDRQQDASRVLEL------SGLVS 275 + F P + + Q R + A ++L + + S Sbjct: 244 DADMFPLVRVHPLWDDDEPFGMTERKYDDIQSWSGLQRRAERAWACVQLPHAWKPANIPS 303 Query: 276 NKRCYEGVHALLDNGYQPRQLQVLVDALPVAP---GLTVIEAPTGSGKTETALAYAWKLI 332 + + L G QPR +Q + GL +IEAP G GKTE ALA A L Sbjct: 304 SCQDLFSTRFRLPEGAQPRPVQEQAVRVARDTDARGLLIIEAPMGEGKTEAALAAAEILA 363 Query: 333 DQQIADSVIFALPTQATANAMLTRMEASASHLF-----SSPNLILAHGNSRFNHLFQSI- 386 + + ALPT AT +AM +R+ L + LAHG ++ N FQ I Sbjct: 364 QRTGRGGICVALPTMATTDAMFSRVHRWLDALPSCDSTDEKTVWLAHGKAKLNDDFQGII 423 Query: 387 --------------KSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVL 432 + + E + KK L VCT+DQVL+ L Sbjct: 424 AASRRHFSSVGQDDTDEPYSRKHGEISPETVVSDWIWGRKKGALANFLVCTVDQVLMGAL 483 Query: 433 PVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQ 492 +KH +R L + V+IVDE HAYD YM L+ L+ VILLSATLP Q++ Sbjct: 484 QMKHVVLRQLAMANKVVIVDECHAYDAYMREYLKMALEWLGSTRTPVILLSATLPESQRE 543 Query: 493 KLLDTY---------------------------------------------GLHTDPVEN 507 ++ Y + + Sbjct: 544 EMAKAYLKGWRNSKLELPSEAKRGGIQELKRRQLAAKNEKVYVNEPKLVQERGISSVHKV 603 Query: 508 NSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAG 567 +SAYP++ + + D+ + R I + D ++ + G Sbjct: 604 SSAYPVLTYTSDTEIKHMDVKPSGRSMNVRCQIVDDS--------DEALISLLDRLLEDG 655 Query: 568 AQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGK----- 622 V +IC+ V AQ + L + ++ + L H+RF DR E + G Sbjct: 656 GCVGVICDTVGRAQHAAKLLSDYFGSEY-VKLTHSRFMDIDRMSNEAELRQLLGPDSTVG 714 Query: 623 NGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRK----YRPAGF 678 NG+R I+V TQV+EQSLD+DFD L+T P DL+ QRLGR+HRH R RP+ Sbjct: 715 NGERPQRMIVVGTQVLEQSLDIDFDTLVTDIAPVDLIMQRLGRVHRHRRGNNECDRPSLL 774 Query: 679 EIPVATI-----LLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASL---FFPDAYRQW 730 I +G + + +V + + +E ++ P + Sbjct: 775 REAACYIRGIAFWNDNGPEFAKGVDAVYDVASLMESLAVLELTGSSAFCTQCLPKDIART 834 Query: 731 LDSIYDDA---------EMDEPEWVGNGMDKFESAECEK----------RFKARKVLQWA 771 + + Y + M + +K E + + R ++ W Sbjct: 835 VRNAYGNDVRSLVPTAWNMQYDKGCEERANKQEKKRADAHSYLIQSVAVMNRKRSLVDWF 894 Query: 772 EEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQ---------- 821 + +D+ RD + ++ ++ + LL + + + + Sbjct: 895 SPQIDETDDDKGQRAVRDTQDTVEVMLLCKHDGEVCLLP-WIGDKRNGIERGAVIPVDTV 953 Query: 822 ----QYEALALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSI 869 + A V +P + + + LE + WQ + Sbjct: 954 PCDDVAKVAAQCSVRLPVAL---CAHGRIDSLIAALEEGCGTEAAYWQESPW 1002 >UniRef50_C7MTA6 CRISPR-associated helicase Cas3 n=1 Tax=Saccharomonospora viridis DSM 43017 RepID=C7MTA6_SACVD Length = 919 Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 215/894 (24%), Positives = 336/894 (37%), Gaps = 90/894 (10%) Query: 8 CHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNT--FCRNEMLSKQRVKA 65 +WGK + L+ H LD AA W + + + L++++ Sbjct: 6 LRFWGKERGL---EGARYPLVCHGLDAAAAVRWLWKRYLSARVRAGLAEAVGLTEEQTCR 62 Query: 66 WLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQD 125 L F+ A HD+GK FQ + L R+ H A W Sbjct: 63 VLEFWAAAHDVGKLTPGFQEQVGVPEGYL----------PDSTGRRCRHEEASHIWLPSA 112 Query: 126 SLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAA 185 + + + + + GHHG +D R M L + Sbjct: 113 LTAVEHT-----------TNSRNARLIAQMLGGHHGVF-RRRDSADFRPGMFVHLGLGDS 160 Query: 186 QDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTT-NTFLFNE 244 R + AL P + +++ G LADWL S + L + Sbjct: 161 SWDLQRHAHLQAWRALLEPPT--LPRRLSRHAAAVATGVVILADWLVSQIDYVRSRLPSL 218 Query: 245 DAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALP 304 D+ +L + ++ V+ +GL S R G +P +LQ + A Sbjct: 219 PEQGDLPSLSEFLSGSREATESVVRQAGL-SRLRLRGGTFEEEFGFDEPNELQSSIAAEL 277 Query: 305 VA----PGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEAS 360 PGL +I APTG GKTE AL A L D + FALPT AT++ M R+ Sbjct: 278 PGLLGNPGLLMIAAPTGFGKTEAALHAARLLSDAAGTSGMFFALPTMATSDEMFNRIARY 337 Query: 361 A-SHLFSSPNLILAHGNSRFNHLFQSIKSRAITE--QGQEEAWVQCCQWLSQSNKKVFLG 417 + L HG + L ++++ E +E V +WL K+ L Sbjct: 338 VVRRAETGVAQSLLHGMAWLKPLRETLEQIHAEEGLSSDDETQVHGLEWLQ-GLKRAMLA 396 Query: 418 QIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGG 477 +GV TIDQ L++VLPV+H +R + +++DEVHA+ YM LL +L + Sbjct: 397 PVGVGTIDQALLAVLPVRHNALRLFSLLGKTVVIDEVHAFSPYMRRLLCTLLGWLGEWNV 456 Query: 478 SVILLSATLPMKQKQKLLDTYGLHT--DPVENNSAYPLINWRGVNGAQRFDLLAHPEQLP 535 V+LLSATLP +L Y P + YP + + + P Sbjct: 457 PVVLLSATLPRNIAAELAAAYRGQNTGTPPDVPVPYPGWTYIERESGIKTRSVDFPRSHR 516 Query: 536 PRFSIQPEPICLADML--PDLTMLERMIAAA---NAGAQVCLICNLVDVAQVCYQRLKEL 590 S+Q P+ +A L +L ++A G ++C V AQ Y+ L++ Sbjct: 517 RTLSVQLRPVAVARESGPDRLPVLREVLAPIVVDEGGGCALVLCTTVAEAQQTYRALRDW 576 Query: 591 NNT-QVDIDLFHARFTLNDRREKENRVISNFGKN----------GKRNVGRILVATQVVE 639 VD+ L HAR+ ++ R ++ FGK G R ++VATQVVE Sbjct: 577 LGETDVDLRLLHARYPMHRRETLTAELMRAFGKPQHGDGGASHVGNRPAKAVVVATQVVE 636 Query: 640 QSLDVDFDWLITQHCPADLLFQRLGRLHRH--HRKYRPAGFEIPV------ATILLPDGE 691 QSLD+DFD +++ P +LL QR GRL RH +RPA ++ + PDG+ Sbjct: 637 QSLDLDFDLVVSDLAPIELLLQRAGRLQRHSGWDPHRPAWADVSRGGQRRFIVLTAPDGD 696 Query: 692 --GYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNG 749 R + R + + E + PD ++ +D P+ Sbjct: 697 LHRLPRSWKFIYPPISLIRAHRLLAERAARGVRIPDDVQELVDR---GNPGQFPDLDDPS 753 Query: 750 MDKFESAECEKRFKARKVLQWAEEYSLQDND-------------ETILAVTRDGEMSLPL 796 + F E + ++ A+ S+ E TR S Sbjct: 754 VSGFTEEEIRRSAESLVETGTADSASIPVPKALTNLTDLSKGPLEEEQVTTRFNADSHRA 813 Query: 797 LPYVQTSSGKQLLDGQVYEDLSHEQ-------QYEALALNRVNVPFTWKRSFSE 843 LP +T G L G E L + + +++ + V VP + R E Sbjct: 814 LPVFRTHDGALRLGGAHGEPLPVPREGKLSKDELKSIMKHTVPVPGSVVRGKDE 867 >UniRef50_A8M400 CRISPR-associated helicase Cas3 n=1 Tax=Salinispora arenicola CNS-205 RepID=A8M400_SALAI Length = 986 Score = 440 bits (1132), Expect = e-122, Method: Composition-based stats. Identities = 204/969 (21%), Positives = 338/969 (34%), Gaps = 109/969 (11%) Query: 2 EPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVL--QNTFCRNEMLS 59 + + WGK+++ +G L H D A VA WD + + + + Sbjct: 6 DLSEDARLVWGKTNR--DRGLVWLPLFRHLADSADVAGLLWDVWLPVTVRQRIAGSFPGG 63 Query: 60 KQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGL 119 + + + +HDIGK F ++ + + + + HG AG Sbjct: 64 FDDGRVLVRWLAGVHDIGKATPAFTWQVGPLREAMREHGFTFDRQVEADRGRAPHGTAGQ 123 Query: 120 YWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPAS 179 S + V GHHG D + R Sbjct: 124 IVLTDWLTGRH------------GWDRASAGGYAVVVGGHHGVPPTDADLTEIRAR--PY 169 Query: 180 LASYAAQDKQAREE---WISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTT 236 L ++E W++ A A +P LL +ADW+ S Sbjct: 170 LLGAGGIWPAVQDELLGWLTRRVAATDRLAVWREVILPQPVQVLLTAIVIVADWIASNEQ 229 Query: 237 TNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQL 296 + F ++ SD + + + R ++ +G+ + + + + G QP + Sbjct: 230 FFPYGFRQEDASDRLQ-QAWEELDLPTPWRAVDTTGVDAAR--FLAQRFKMPPGAQPYPV 286 Query: 297 QVLVDALPVA---PGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAM 353 Q V A PGL ++EAP G GKTE ALA L + A ALPT+AT++AM Sbjct: 287 QAAVLEQARAMPLPGLLIVEAPMGEGKTEAALAAVEVLAGRSGAGGCFVALPTRATSDAM 346 Query: 354 LTRMEASASHLFSSP------NLILAHGNSRFNHLFQSIKSRAITEQG--QEEAWVQCCQ 405 +R+ S L + LAHG + N + + + E Sbjct: 347 FSRVLGWLSRLPDADVGRGAREAALAHGKAILNDEYSRLYRGMLPSAIGVDEGGTAVAAH 406 Query: 406 WLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLL 465 K+ L V TIDQ+L + L +H +R LG+ V++VDE HAYD YM+ L Sbjct: 407 GWLAGRKRKMLSSFVVGTIDQLLFAALQARHVALRHLGLAGKVVVVDEAHAYDVYMSQYL 466 Query: 466 EAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRF 525 + L+ G V++LSATLP ++ ++ Y + + G + A Sbjct: 467 DRALEWLGAHGVPVVVLSATLPAHRRADMMQAYDVGRFGPRRGARRRRRFRAGSDEATDD 526 Query: 526 DLLAHPEQLPPRFSI----------------QPEPICLADMLPDL-TMLERMIAAANAGA 568 D + E+ P S+ + + L DL + +R+ G Sbjct: 527 DQVLRDERRYPLLSVSGVDRVPTTVGCAASGRSFDVRLERSDDDLAALADRLRTDLTDGG 586 Query: 569 QVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGK------ 622 V ++ N V L+ L ++ + + H+RF DR K+ + FG Sbjct: 587 CVLVVRNTVARVLETADELRRLLGPKIPVSVAHSRFMAADRAAKDTWLRDTFGPPEHLTE 646 Query: 623 -NGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIP 681 R ++VA+QV EQSLD+DFD L+T P DL+ QRLGRLHRH R RP P Sbjct: 647 WGRARPACHVVVASQVAEQSLDIDFDLLVTDLAPVDLILQRLGRLHRHRRAVRPGRLAQP 706 Query: 682 VATILLPDGEGYGRHE-----HIYSNVRVMWRTQQHIEELNGA-SLFFPDAYRQWLDSIY 735 + D +Y + ++ + L+G L+ P + + Y Sbjct: 707 RCLVTGVDWATVPPAPVPGSVTVYQHHALLRAAAVLLPYLDGDRPLYLPQDIAPLVQTAY 766 Query: 736 DDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYS-------------------- 775 + P W + A+ ++ + Sbjct: 767 GRGSVGPPGWQSTLAEAAVQADARAEVARKRADTFRVGPVQAPGVSLVGWLDASVGDSEA 826 Query: 776 LQDNDETILAVTR-DGEMSLPLLPYVQTSSGKQLLD----GQVYEDLSHEQQYEALALNR 830 N+ A R DG +L +L V+ G E + + ++A Sbjct: 827 TNGNEWRGRAHVRDDGAEALEVLILVRRGEKLVTPPWLDQGGDVEVPTDFEPSRSVARTM 886 Query: 831 VNVPFTWKRSFSEVVDEDGLL-WLEGKQNLDGWVWQGNSIV------------------I 871 + ++ + D ++ LE + W + Sbjct: 887 LRCALPLPQALTAHGGVDRIIAELERRNTFPAWEKDRLLGGELILDLDEQGRSRLTDFVL 946 Query: 872 TYTGDEGMT 880 TY D G+ Sbjct: 947 TYDRDTGLR 955 >UniRef50_Q1EQS5 CRISPR-associated helicase n=2 Tax=Streptomyces RepID=Q1EQS5_STRKN Length = 990 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 198/904 (21%), Positives = 314/904 (34%), Gaps = 85/904 (9%) Query: 8 CHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVV--LQNTFCRNEMLSKQRVKA 65 +WGK + + ++ H LD AAV WD + + L ++ ++ Sbjct: 24 ARFWGKERELPHP----YPVVCHLLDTAAVFGVLWDVLLGAEVHERVSEALGLRVEQARS 79 Query: 66 WLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQD 125 L F+ LHD+GK FQ + ES+ L P + R F H A + Q Sbjct: 80 VLSFWAGLHDLGKITPPFQAQVPESFAGLRADAAYRFAPGAEKERAFRHEMATHWSLTQL 139 Query: 126 SLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFI-LHSQDQDKSRWEMPASLASYA 184 D A H + + GHHG ++ SR Sbjct: 140 LGEAGYPADGRLMRRAVSHQ------VAQLLGGHHGSFGAVLLSKELSRASEYRPGLGEE 193 Query: 185 AQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWT-TTNTFLFN 243 Q R + + + +P + + + G +ADWL S + Sbjct: 194 GWAAQRRAHFAELRRVTGADA--VPTQGLPAELAVSVTGLVVVADWLASQRGAIVPLMPP 251 Query: 244 EDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDAL 303 L ++ Q A ++ + L + ++ + P LQ + Sbjct: 252 VGWQGRPEELDAHWSRTQAAAVGLVAKARLGRAR--FDAERFEEMFPFSPNALQGDLAER 309 Query: 304 ------PVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRM 357 PGL ++ APTG GKTE AL A L A + FALPT ATA+AM R+ Sbjct: 310 LPRLVGERGPGLLLVTAPTGDGKTEAALYAASVLGRAANARGLYFALPTMATADAMFPRV 369 Query: 358 EASASH-LFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQ---EEAWVQCCQWLSQSNKK 413 A+ L L L H + + + + G + A + +K+ Sbjct: 370 RDFAAEALEGERALTLLHSMAWLSPAYAQDEQAPEVSDGAVSADPATATEAGTWLRGSKR 429 Query: 414 VFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQA 473 L +GV TIDQ L +VLP+++ +R G+ V +VDE HAY +M+ LL +L+ Sbjct: 430 GLLAPLGVGTIDQTLAAVLPLRYNALRLFGLSDKVFVVDEAHAYGPWMHQLLSRLLEWLG 489 Query: 474 DVGGSVILLSATLPMKQKQKLLDTYGLHT---DPVENNSAYPLINWRGVNGAQRFDLLAH 530 V+LLSATL + L+D Y +P AYP + + Sbjct: 490 AFRAPVVLLSATLTGRTAASLVDAYRRGAGFLEPSAVEPAYPGWLFTDSRTGKISRPRTV 549 Query: 531 PEQLPPRFSIQPEPICLADML----------PDLTMLERMIAAANAGAQVCLICNLVDVA 580 Q I P+ M + E + A G + C V A Sbjct: 550 TSQRARTLDIDLRPVAWDAMEGPAATPRTEGRRAALREVLRPVAEEGGTALVCCTTVAEA 609 Query: 581 QVCYQRL----KELNNTQVDIDLFHARFTLNDRREKENRVISNFGK------NGKRNVGR 630 Q ++ L EL + + L H+R+ R+ +GK Sbjct: 610 QQTFRDLCTAFPELALREGGLRLLHSRYPAFARQRITADCEEAYGKLRGDLEAAPPRPAS 669 Query: 631 ILVATQVVEQSLDVDFDWLITQHCPADLLFQR-----------LGRLHRHHRKYRPAGFE 679 ILVATQVVEQSLD DFD +++ P L QR GR H + RP Sbjct: 670 ILVATQVVEQSLDFDFDVVVSDLAPVAQLLQRAGRGRRHARGKAGRPPWAHLEDRPLLVV 729 Query: 680 IPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAE 739 + + R + ++ RT + E + PD + +D++Y + Sbjct: 730 LEP--VDGDGKTAVPRTWGAVYDAGLLRRTALLLAEQTRTGIAIPDGVQSLVDAVYAEDF 787 Query: 740 MDEPEWVGNG-MDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAV------------ 786 +D + + + +S + + D + + Sbjct: 788 VDGLDAAARLELRRMDSERAAGEIAEEHLAGMVGICAPADVAGDLHKLSRQEAGVTEELL 847 Query: 787 -TRDGEMSLPLLPYVQTSSGKQLLD-------GQVYEDLSHEQQYEALALNRVNVPFTWK 838 TR G S +L + G LD Q + Q+ + + VP +W Sbjct: 848 TTRLGADSGRVLCLYEQQDGALTLDDAGALPLPQGGKRGPSRQELVQIMAHVAPVPGSWL 907 Query: 839 RSFS 842 R Sbjct: 908 RGAE 911 >UniRef50_D0WFD2 CRISPR-associated helicase Cas3 n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WFD2_9ACTN Length = 946 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 191/851 (22%), Positives = 317/851 (37%), Gaps = 110/851 (12%) Query: 31 CLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYKSAES 90 D +A W + + + LS ++ + + ++HDIGK FQYK + Sbjct: 1 MGDSGEIARLLWSKWLPRTVKKLIAQDLSDSAAESLVAWMASVHDIGKATPAFQYKVTDR 60 Query: 91 WLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWF 150 + + +H G Sbjct: 61 AESVRETGLEI----PAGIDSKSHAFMGQVILEDWLFDRAW---------------SHPN 101 Query: 151 PWVEAVTGHHGFILHSQD-QDKSRWEMPASLASYAAQDKQAREEWIS---VLEALFLTPA 206 + V GHHG S D R + + + E + VL F Sbjct: 102 IFSCVVGGHHGAPPDSSTILDNLRDSLLPKEVLGESTWTTVQIELLDYAFVLSGAFGHEG 161 Query: 207 GLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINAL-RTYFQDRQQDAS 265 L ++P LL ++DW+ S + + +D A R ++ A+ Sbjct: 162 ELKELELPQHTQVLLTALVIMSDWIASNADLLPLVSGIASTADFRARAREAWERLALPAA 221 Query: 266 RVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPV---APGLTVIEAPTGSGKTE 322 V L G + R + + + R Q+L PGL +IEAP G+GKTE Sbjct: 222 WVPSLHGEPAEAR-FHARFDNIPEAARLRPAQILAVEAAESLEDPGLIIIEAPMGNGKTE 280 Query: 323 TALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSP-----NLILAHGNS 377 +L A L ++ + + + LPT AT+NAM +R+E SH+ + ++ L H S Sbjct: 281 ASLLCAEILAEKFGSGGIAYLLPTMATSNAMFSRVENWLSHMADADGSSRQSMQLLHSKS 340 Query: 378 RFNHLFQSIKSRAITEQGQE----------EAWVQCCQWLSQSNKKVFLGQIGVCTIDQV 427 N F S+++ T G E + + QW K+ L V T+DQ+ Sbjct: 341 ALNKDFASLRTWNHTWMGDERNQQRSKNPNDESIIAHQWFG-GRKRGLLASFVVGTVDQL 399 Query: 428 LISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLP 487 L++ L KH +R LG+ V+++DEVHAYD YM+ L+ V+ +LLSATLP Sbjct: 400 LMAALKAKHVQLRHLGLAGKVVVIDEVHAYDAYMSVYLDRVMTWLGAYRVPTVLLSATLP 459 Query: 488 MKQKQKLLDTYGL----------------HTDPVENNSAYPLINWRGVNGAQRFDLLAHP 531 +++++L+ Y AYPL+ G + Sbjct: 460 PQRRKQLIRAYRGKDARSTGRPSKRRLIDPPRRATGEPAYPLVTVSGRDLDSERYCDCEV 519 Query: 532 EQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELN 591 I D+L + + G C++ + V AQ Y+ LK Sbjct: 520 ASRGTDVEISFLLDGDDDLL------ATLRDRLSDGGCACVLRDTVSRAQETYEFLKTAM 573 Query: 592 NTQVDIDLFHARFTLNDRREKENRVISNFGKN-GKRNVGRILVATQVVEQSLDVDFDWLI 650 + ++ L H+RF DR + ++ G N +R ++V TQV+EQSLD+DFD++I Sbjct: 574 DA--EVRLVHSRFIAADRLSNDAELLKLLGPNASRRPRSLVVVGTQVIEQSLDIDFDFMI 631 Query: 651 TQHCPADLLFQRLGRLHRHHRK----YRPAGFEIPVATI-----LLPDGEGYGRHEHIYS 701 T P DLL QR+GRLHRH R R A I + + + Sbjct: 632 TDIAPIDLLLQRMGRLHRHQRGEGQSERSAKLRTAQCFITGSKDWSVEPPEFDKGIIAVY 691 Query: 702 NVRVMWRTQQHI----EELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMD------ 751 + ++ RT + + G+ + P ++++Y+ E +++ +G+ Sbjct: 692 HPALLLRTILALKVRCDGAGGSRINLPHDIAGLVETVYEGLEPGSNDFLLDGLKDDAWRD 751 Query: 752 ----------------------KFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRD 789 E K K ++ W ++ET A RD Sbjct: 752 ALLGAQDDLRQYRMSQESKASNWLLGKERTKPGKVFDLVGWLGNRFSLSDEETGRAAVRD 811 Query: 790 GEMSLPLLPYV 800 + SL ++ Sbjct: 812 SQESLEVVALH 822 >UniRef50_A5UR18 CRISPR-associated helicase, Cas3 family n=1 Tax=Roseiflexus sp. RS-1 RepID=A5UR18_ROSS1 Length = 927 Score = 438 bits (1126), Expect = e-121, Method: Composition-based stats. Identities = 224/909 (24%), Positives = 344/909 (37%), Gaps = 81/909 (8%) Query: 7 ICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNT--FCRNEMLSKQRVK 64 + +WGK+ + T H I+H LDVA VA+ + + Sbjct: 8 LLQFWGKTPRPGTPVTQFHPAIFHMLDVACVAEALLRHGPQRVRQALLHAWRGADPEALI 67 Query: 65 AWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQ 124 +WL F IALHD+GK FQ + +L A S ++ +H A W + Sbjct: 68 SWLPFLIALHDLGKLSAAFQGQDEAQRERLTRAGVQFRSHSPEL----HHAAISALWIHD 123 Query: 125 DSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQ--DQDKSRWEMPASLAS 182 + + + + +A GHHG + D K + + Sbjct: 124 YLAQ-----------NEPEIAQDLVWIFRDATGGHHGRFVDESMEDLRKKLHYVERGESR 172 Query: 183 YAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLF 242 + KQ +L + P + L G +DW+GS Sbjct: 173 WRDWRKQGYVLLRDLLAPEDKPLHRIGTPVAPRPATVALTGLLVWSDWIGSNEHDFP--- 229 Query: 243 NEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDN-GYQPRQLQVLVD 301 + + Y +Q A L L +++ + PR LQ +VD Sbjct: 230 ----ATPGMDIHCYLSLSRQRAQNALTTHYLRASRSQPQYSDFRALFQAIAPRPLQAVVD 285 Query: 302 ALPVA----PGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRM 357 L P L VIEAPTG GKTE ALA A ++ + D + FALPT AT N M TR+ Sbjct: 286 RLSDNDLRQPALVVIEAPTGEGKTEAALALARRIAALRGIDEIFFALPTMATGNQMFTRL 345 Query: 358 EASASHLFSSP-NLILAHGNSRFNHLF---QSIKSRAITEQGQEEAWVQCCQWLSQSNKK 413 E L+ ++ L+H + + S E KK Sbjct: 346 ERFFRTLYGDGGSVRLSHSQAIVVEDDLRRRVTLSADQDRSDPEGCSADVMLGWFVGPKK 405 Query: 414 VFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQA 473 L GV T+DQV + L V+H +R G+ V+++DEVHAYD YM+ +LE L A Sbjct: 406 AMLAPFGVGTVDQVELGGLNVRHYPLRLFGLASKVVMIDEVHAYDAYMSVILEHTLAWLA 465 Query: 474 DVGGSVILLSATLPMKQKQKLLDTYGLHTDP-----VENNSAYPLINWRGVNGAQRFDLL 528 +G S+ILLSATLP ++ L + T+P + YP ++ Sbjct: 466 TLGCSIILLSATLPRQRHDALARAFLRATEPAAALSLPEKLPYPALSLYHATAQSHHTCD 525 Query: 529 AHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLK 588 + + + + R++ G V ICN VD AQ Y+ L Sbjct: 526 VFRGEQRFILRFRKQSAPEEE-------AGRLLELIRNGGAVARICNRVDDAQAIYRALI 578 Query: 589 ELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKR-NVGRILVA-TQVVEQSLDVDF 646 V L HARF L++R+ +E + + GK+ +R RI++A TQV+EQSLD D Sbjct: 579 ASGARDVTCVLLHARFPLHERQRREQCISNLVGKDSQRTPEQRIIIAGTQVLEQSLDYDV 638 Query: 647 DWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGE----GYGRHEHIYSN 702 D +++ P DLL QR GRLHRH+R RP PV I++P E + R IY Sbjct: 639 DVMVSDFAPIDLLLQRAGRLHRHNRC-RPDDHREPVLEIVIPYDEQGEPDWRRWRAIYEP 697 Query: 703 VRVMWRTQQHIEELNGAS---LFFPDAYRQWLDSIYDDAEM--DEPEWVGNGMDKFESAE 757 ++WR+ + + + P YR ++++Y A + V ++ Sbjct: 698 Y-ILWRSLATLCDGLTDDTRIVTLPRDYRTLIEAVYSAAPVVGRYAGEVAKAEQEYRKTI 756 Query: 758 CEKRFKARKVLQWA----------EEYSLQDNDETILAV-----TRDGEMSLPLLPYVQT 802 + KAR L S + + A TR G+ + L+P + Sbjct: 757 DAQTAKARSPLTPDAMIRAPIVEHGGRSYIEEETGAEASWQLAKTRLGDR-VTLVPVYRV 815 Query: 803 SSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGW 862 + L G + + + +NV E + W Sbjct: 816 NGEVSLDPGGTFRIPTDVPPTLEQMKDVINVAVPVSD-----RAVIAAYRDEHRDRALRW 870 Query: 863 VWQGNSIVI 871 W + Sbjct: 871 TWSVIPAPL 879 >UniRef50_Q0BSC3 Superfamily II DNA and RNA helicase n=2 Tax=Alphaproteobacteria RepID=Q0BSC3_GRABC Length = 832 Score = 437 bits (1124), Expect = e-121, Method: Composition-based stats. Identities = 230/897 (25%), Positives = 357/897 (39%), Gaps = 103/897 (11%) Query: 11 W-GKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLF 69 W GKSS +T H +H LDVAAVA+ + V + ++ L+ Sbjct: 6 WPGKSS--VTPDGPEHPAAFHMLDVAAVAERLIEPFGVAR------------PLRDALVV 51 Query: 70 FIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSE 129 ALHDIGK F+ E + F H F + Sbjct: 52 MTALHDIGKISESFRAMLREGVAQPG----------------FRHWELSEVLFYVEDARI 95 Query: 130 QSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFI-LHSQDQDKSRWEMPASLASYAAQDK 188 + A+ GHHG H +P L Sbjct: 96 AA---------RLGGTPLVRKMLYAAIAGHHGRPSEHMLGALPPEARLPRELVRALKCVG 146 Query: 189 QAREEWISVLEALFLTPAGLSINDIP----PDCSSLLAGFCSLADWLGSWTTTNTFLFNE 244 + RE +++ F S+ + S LAGFC+ ADW+GS Sbjct: 147 EGREPAARLMDVFFDLWPEASLEGLTLAEATTLSWWLAGFCAAADWVGSNLGWFP----- 201 Query: 245 DAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALP 304 ++ ++L Y Q + A+R + +G+ + D +P Q+ ALP Sbjct: 202 -PKTEADSLAAYLQQTRAIAARAVVEAGIAGTMVRQGKL---FDFVLRPMQVACSTIALP 257 Query: 305 VAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHL 364 P L ++E TG+GKTE AL + + ALPT AT +AM R + Sbjct: 258 DGPTLAIVEDGTGTGKTEAALILVHRFCQAGKGRGLFDALPTMATTDAMFDRASRIVGRM 317 Query: 365 FSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTI 424 F +P++ LAHG + + F+ + R+ T E + WL++ N++ L +G+ TI Sbjct: 318 FDNPSVTLAHGRAGLSVPFRELVQRSRTGGPGE---ITSSDWLAEGNRRALLADVGIGTI 374 Query: 425 DQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYD-TYMNGLLEAVLKAQADVGGSVILLS 483 DQ L+SVLPV+ + +R G+ +L+VDEVH Y+ L A+LK GGS ILL+ Sbjct: 375 DQALLSVLPVRFQTLRIYGLSSKILLVDEVHEMGEAYIAEELTALLKMHRAAGGSAILLT 434 Query: 484 ATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPE 543 ATLPM + KLL TY +N AYP + G +F +P Sbjct: 435 ATLPMSLRSKLLATYDG----ASDNPAYPALTIAGGEAITQFPAEDYP---------VKG 481 Query: 544 PICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHAR 603 P+ + + + + A GA + N VD A + L+ V+ L HAR Sbjct: 482 PVKVERLDTAADAVTLLTGMAAQGAACVWVRNAVDDAIEAVEALRA---AGVEARLIHAR 538 Query: 604 FTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRL 663 F L DR+ E +++ GKNGK G +LV TQV+E SLD+DFD +++ P L QR Sbjct: 539 FALCDRKRIEAEILATVGKNGKGRAGFVLVGTQVLESSLDLDFDVMVSDIAPIAALIQRA 598 Query: 664 GRLHRHH--RKYRPAGFEIPVATILLPDGE----------GYGRHEHIYSNVRVMWRTQQ 711 GRL RH R PV +L PD G+ +Y+ V WR+ + Sbjct: 599 GRLWRHMDIRPVSVRPVAGPVLYVLSPDPSLVEDERWLHGTLGKGAWVYALADV-WRSAR 657 Query: 712 HIEELNGASLFFPDAYRQWLDSIYDDAEMDEPE-WVGNGMDKFESAECEKRFKARKVLQW 770 + + PD R ++++Y PE + DK+ ++ ++++ Sbjct: 658 VL--FTQGQIGTPDRQRALIEAVYGTDTEPVPEALLKAEQDKYGKDSADRGLAWHNIVKF 715 Query: 771 AEEYSL-QDNDETILAVTRDGEMSLPLLPYVQTSSGKQLL---DGQVYEDLSHEQQYEAL 826 + Y D+ + TR GE L +T +G +G+ LS + Sbjct: 716 TDGYRKAGRGDDDVNYPTRLGEEVRVLRLARRTRTGLVPWAEGEGEDAWALSDVSAHRK- 774 Query: 827 ALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVIT----YTGDEGM 879 L+ + +P ++ + W E K+ I Y + G+ Sbjct: 775 KLDALPLPDQSSPEIMKITKD----WPEWKRAQIRLCPVDEDGSICEGLNYDEECGL 827 >UniRef50_B8IZA2 CRISPR-associated helicase Cas3 n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8IZA2_DESDA Length = 860 Score = 435 bits (1117), Expect = e-120, Method: Composition-based stats. Identities = 208/860 (24%), Positives = 327/860 (38%), Gaps = 85/860 (9%) Query: 8 CHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWL 67 +W K+ S G + L H +AV C Q Q + A + Sbjct: 4 YTFWAKTYASNLPGISVLL---HGRFASAVGRCLVRAMFPPQ----------WQDLHAVV 50 Query: 68 LFFIALHDIGKFDIRFQYK--SAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQD 125 F +++HD+GK +FQ K L + PS H + Sbjct: 51 AFLLSIHDVGKISPQFQGKCLLWLEQNGLAREAANNAWPSFTTT----HACLSQEILDY- 105 Query: 126 SLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAA 185 F+ ES+ W V HHG ++ + P S + Sbjct: 106 ------------FWQQKGLLSESYSLWSAIVGAHHGKWAKAKPHHYGQVSPPCLAPSPSV 153 Query: 186 QDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLA--GFCSLADWLGSWTTTNTFLFN 243 E ++ + + A + + +SL A G LADW+ S Sbjct: 154 DW---LREELNFVAYQWEQHANTELPPVTGASASLYASAGLLVLADWIASDEHHFPANPT 210 Query: 244 EDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDAL 303 +D + + A V+ G ++ G+ G P +QV Sbjct: 211 LAPIAD--------EQIDRVAHDVVGSLGF-ASLEIRTGLSFEDIFGCSPYPMQVAAWCN 261 Query: 304 PVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASH 363 PG+ VIEAP G GKTE AL A+KL++Q A + F LPTQAT+N + R+ Sbjct: 262 ITEPGIYVIEAPMGMGKTEAALMAAYKLMEQGKARGLYFGLPTQATSNRIYERVLEFILR 321 Query: 364 LFS-SPNLILAHGNSRFNHL-----FQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLG 417 + + + L HGNS Q + + +W S + L Sbjct: 322 ISPTAQRVQLIHGNSWLLDDTLAMPEQQQLPDDSAADPKAGSGADPLRWFCSSR-RALLA 380 Query: 418 QIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGG 477 +GV T DQ +++ L VKH +R L + V+I+DEVH+YD Y +++ + + AD+G Sbjct: 381 PVGVGTADQAMLAALAVKHFALRRLALLGKVVILDEVHSYDHYTRAIIQQLCRVLADLGS 440 Query: 478 SVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPR 537 +VI+LSATL + LL ++ + + P G Q + P PP Sbjct: 441 TVIILSATLSGSARSALLQSHSPVSSMGAEEDSLPYPCISGRAHDQDT-VQVIPCTPPPS 499 Query: 538 FSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELN---NTQ 594 ++ D P + R I A +G QV +CN V AQ ++ ++ + Q Sbjct: 500 HTVHV------DFQPLQGAISRTIDIAASGGQVLWVCNTVANAQETFRNIQAHAAVTDCQ 553 Query: 595 VDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHC 654 D+ + HAR R E+E + GK G+R G ILV+TQ+VEQS+D+D D L T+ Sbjct: 554 ADMGILHARLPFFMREERETEWMQRLGKKGQRQRGCILVSTQIVEQSVDLDADVLFTELA 613 Query: 655 PADLLFQRLGRLHRHHRKYRPAGFEI-----------PVATILLPDGEGYGRHEHIYSNV 703 P D+L QR+GRL RH R+ RP + + P + + Sbjct: 614 PTDMLLQRMGRLWRHTRRDRPVPHPCMHIIAENFSLTDLLDMSAPAITKALGSKAKVYDP 673 Query: 704 RVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFK 763 ++ RT + + S+ PD R+++ + Y + E +F + K Sbjct: 674 FILLRTLEVWGK--AVSVTLPDDIRRFIYATYTEPEFLTEALQELYDAQFGKSAAMKMQA 731 Query: 764 ARKVLQWAEEYSLQDNDETILAVTRDGE--MSLPLLPYVQTSSGKQLLDGQVYEDLSHEQ 821 W L D A TR + ++ + LLDG V + Sbjct: 732 QINTDIW----RLAGTDVEEYAPTRLSDHQEYGFVMYRSNVKNQITLLDGSVVNANDKDF 787 Query: 822 Q---YEALALNRVNVPFTWK 838 + L N V +P Sbjct: 788 RKDTARKLHRNAVRIPDYRL 807 >UniRef50_B7KJ22 CRISPR-associated helicase Cas3 n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7KJ22_CYAP7 Length = 908 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 201/926 (21%), Positives = 350/926 (37%), Gaps = 104/926 (11%) Query: 8 CHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQ--SVVLQNTFCRNEMLSKQRVKA 65 W K K H ++H +D A V + S L + + ++ + + Sbjct: 5 LLLWAKLDK--KNSEIYHPPLFHLIDTATVTKALLTKGLSPYLVSRLSESLEINHESLLQ 62 Query: 66 WLLFFIALHDIGKFDIRFQYKS---AESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWF 122 + F HD+GK FQ+++ +E KL + + K HG Sbjct: 63 FAPFLSGSHDLGKIAPDFQFQNDQGSEIAKKLMGESSYSLWQKNRERNKILHGTITAVTL 122 Query: 123 NQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLAS 182 + + + GHHG H D +++ Sbjct: 123 PE-------------YLENFGLDSIIAEELAVITGGHHGIFPHPNDIKNAKYSKSNIGKK 169 Query: 183 YAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLF 242 + + R+E + L + P +LAG +L+DW+ S Sbjct: 170 H---WIKLRKETVDELVKYTKIEKKDFPTKLTPASKIILAGLITLSDWIASNQAWF---- 222 Query: 243 NEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVH----ALLDNGYQPRQLQV 298 P L Y + + + L SG + + + ++PR LQ Sbjct: 223 ---RPCSNKPLEEYVKTIDEKVDKALRESGWIGWESHDSTLPSKKLFNYIKEFEPRHLQE 279 Query: 299 LVD----ALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQI-ADSVIFALPTQATANAM 353 ++ L P L +IE PTG GKTE ++ A A FALPTQAT+N + Sbjct: 280 EIEKKMPELQDKPFLLIIEGPTGEGKTEGSIIVAEWCGVSGGIARGAYFALPTQATSNEL 339 Query: 354 LTRMEASASHLFSSPNL--ILAHGNSRFNHLFQSI---KSRAITEQGQEEAWVQCCQWLS 408 R+ + + + L H N++ + F + + ++ + V +W + Sbjct: 340 YKRISQYLRNRYPLQKVPFHLVHSNAQLSDTFSETIICRLDQVYDEDKHPPGVIANEWFT 399 Query: 409 QSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAV 468 K+ L G TIDQ L+ +L KH F+R G+ +I+DE+HAYD Y + L+E + Sbjct: 400 Y-RKRPLLSPWGTGTIDQALMGILRSKHNFVRLFGLAGKTVILDEIHAYDAYTSTLIEWL 458 Query: 469 LKAQADVGGSVILLSATLPMKQKQKLLDTYG---LHTDPVENNSAYPLINWRGVNGAQRF 525 L+ A +G V+ +SATL KQ++ + Y + P+ N YP + Q Sbjct: 459 LEWLAALGSPVVAMSATLSQKQRETFVAAYSRGFGESAPILNQCPYPRLTICSPKIEQNK 518 Query: 526 DLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQ 585 + + +L I+ E I A + L + G ++ + AQ YQ Sbjct: 519 VISFNISKLNASRKIRFEWIDEAQIPQILE------NSLKQGGTAAILRTQIAWAQQTYQ 572 Query: 586 RLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKN---GKRNVGRILVATQVVEQSL 642 L ++ + L H+RF DR+++E R ++ +GK K ATQ++EQSL Sbjct: 573 DLIPSTFSKDERILLHSRFLHIDRKQQEKRCLAVYGKEVDKTKVRPRSACAATQIIEQSL 632 Query: 643 DVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGE------GYGRH 696 D+DFD +I+ P DLL QR+GR+ RH R RP G P+ ++ P + + Sbjct: 633 DLDFDLMISDLAPIDLLLQRIGRIWRHDR-VRPTGITEPLLYLIRPKFKDDLPDFDFIVE 691 Query: 697 EHIYSNVRVMWRTQQHIEELNGASLFFP--------DAYRQWLDSIYDDA--------EM 740 + IY ++ RT + L+G P ++ +YD + Sbjct: 692 KFIYERH-LLLRTWDVLNSLDG--YLEPFKFIDSKTRQIDYLIEQVYDFSHPPLASLNSA 748 Query: 741 DEPEWVGNGMDKFESAECEKRFKARKVLQWA----EEYSLQDNDETILAVTRDGEMSLPL 796 + +W + E+R + L E + L E VTR ++ + Sbjct: 749 TQDDWNSSQAKLESQIISEQRLARNRNLPHVNQQPEAWELTHRPENADLVTRLTPRTVTV 808 Query: 797 LPYVQTSSGKQLLDGQVYEDL-----SHEQQYEALALNRVN------------VPFTWKR 839 + +T+ G L + + +++ + + + VN +P Sbjct: 809 VLAQETARGLILPRSRSKRQIHPNRKPTKEEVKDILDHSVNLTKRGLVDQLEALPTESGW 868 Query: 840 SFSEVVDEDGLLWLEGKQNLDGWVWQ 865 + ++ LL L+ + WQ Sbjct: 869 IQNTLLRNVKLLRLQNGYYSEIPNWQ 894 >UniRef50_B5GA96 Helicase n=1 Tax=Streptomyces sp. SPB74 RepID=B5GA96_9ACTO Length = 963 Score = 422 bits (1084), Expect = e-116, Method: Composition-based stats. Identities = 204/904 (22%), Positives = 322/904 (35%), Gaps = 89/904 (9%) Query: 8 CHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQS--VVLQNTFCRNEMLSKQRVKA 65 H WGK+ ++ + L+ H D AV WD + + ++ Sbjct: 17 RHLWGKADGL----DEAYPLVCHLFDTGAVVGALWDGWIGREQAGRLAASAGVEPDGFRS 72 Query: 66 WLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQD 125 L F+ ALHDIGK + FQ K + +L + + F+H AG +W Sbjct: 73 LLCFWAALHDIGKISVPFQKKVTSLFDQLLAWESGARTTADEDSDSFHHS-AGSHWLLPA 131 Query: 126 SLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAA 185 L+E H + + GHHG DQ R + Sbjct: 132 LLAEIGYPADRRARRHLGH------HVAQLLGGHHGIFHEEMDQRFLRNPRGLAPGLGGG 185 Query: 186 QDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTT-NTFLFNE 244 ++ + + A L+ +P + + ++ G LADWL S + + + Sbjct: 186 FWEEQARRHVRAALRVTQPVAPLA-EMLPAETAVIVCGLIVLADWLASQADFIKSRMPDV 244 Query: 245 DAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVD--- 301 + +AL +++ A VL +GL ++ ++P LQ + Sbjct: 245 SWLATESALDEHWRSAVAAAPAVLAEAGL--RPAAFKDASFAEMFAFEPNDLQSSLLSGL 302 Query: 302 -ALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEAS 360 PG+ ++ APTG GKTE ALA A L A + LPT AT +A R+ A Sbjct: 303 PDELTGPGMILLTAPTGDGKTEGALAAAVGLARASGATGLGVVLPTMATTDAAHRRVAAF 362 Query: 361 ASHLFSSP-NLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQI 419 + F+ + H + + + + A T+ + L Sbjct: 363 CAKAFAQDGAVTKVHSMAWLSRDAEVDAATAGTDATMGARADVAAPAWLSGRYRPHLAPA 422 Query: 420 GVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSV 479 V TIDQVL +VLPV++ +R L + VL++DE HAY +M+ LL +L+ V Sbjct: 423 FVATIDQVLSAVLPVRYNVLRHLAVSGKVLVIDEAHAYGPWMHALLLRLLEWLGAHRVPV 482 Query: 480 ILLSATLPMKQKQKLLDTYGLHTDPV-------ENNSAYPLINWRGVNGAQRFDL-LAHP 531 +++SATL + LL Y + P E YP + +G P Sbjct: 483 VVMSATLAGETASSLLRAYRRGSAPGLPAPADDECAVPYPGWRFVAADGRIGAPHSFTTP 542 Query: 532 EQLPPRFSIQPEPICLADMLPDLTMLERMIA-AANAGAQVCLICNLVDVAQVCYQRLKEL 590 + + P L L +++ G ++C V AQ + L+E Sbjct: 543 RRHTLQIRTHAVPFADDPSAARLAKLRKLLEPVFRDGGNALVVCTTVADAQDTTEALREY 602 Query: 591 N-------NTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGR-------ILVATQ 636 V + H+RF +DR R +++G R+ R ILVATQ Sbjct: 603 AEEQQGDRPDPVPVATLHSRFAAHDRFRLSARCEADYGPRRPRDGSRTARPTASILVATQ 662 Query: 637 VVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPA------------------GF 678 VVEQSLD+DFD LIT H P LL QR GR RH Sbjct: 663 VVEQSLDLDFDMLITDHAPLALLLQRAGRCCRHAMLGDDPHAAHRPSWWSAHSTGGLTEV 722 Query: 679 EIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDA 738 I V ++ G G +Y + ++ RT+ + G L P+ + +D +Y D Sbjct: 723 RIEVLDLVGKKGGFPGAARSVYGDGPLL-RTRNLLAARAGTPLRVPEDVQGAIDDVYADD 781 Query: 739 EMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETI--------------- 783 D ++ A+ E + V + + Sbjct: 782 FSDRLALTAAATERVGIADRESK-AGEAVETQLAGLVAISSPADVGSDLSELSRAQAEVS 840 Query: 784 --LAVTRDGEMSLPLLPYVQTS-------SGKQLLDGQVYEDLSHEQQYEALALNRVNVP 834 L TR G S ++ +G G +Q LA + V V Sbjct: 841 DDLVATRFGADSGRVVCVYDVDGRWFLDAAGTVPAPGIEGRRPLTREQARVLAEHVVPVS 900 Query: 835 FTWK 838 Sbjct: 901 GGLL 904 >UniRef50_C8XAY8 CRISPR-associated helicase Cas3 n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XAY8_NAKMY Length = 918 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 205/931 (22%), Positives = 319/931 (34%), Gaps = 116/931 (12%) Query: 26 LLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQY 85 L H D A VA WD+ + + + L++ HD+GK F Sbjct: 2 PLWRHLSDTAEVAGLLWDRWMAPSVRRIIADGRPDDVARTVLVWLAGSHDLGKASPAFAA 61 Query: 86 KSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHP 145 + + A P + + H Q ++ Sbjct: 62 QVRPLTEPMRDAGL-PFSPLVEHPPRTPHAQQSHRILRQW-------------LESNGFD 107 Query: 146 YESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTP 205 ++ W GHHG D + A + +Q +W++ + Sbjct: 108 RDTADSWAIVPGGHHGVAPGRDDITHAGVAAQAGTGPWRG-VQQELTDWVARNSGITAHL 166 Query: 206 AGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDAS 265 L + P ++ +ADW+ S T +R + Sbjct: 167 DSLRTAALAPTAQVVITAVVIVADWIASDTARFPCFDTRSTA-----------ERVRSGW 215 Query: 266 RVLELSGLVSNKRCYEGVHALLDNGYQPRQLQV---LVDALPVAPGLTVIEAPTGSGKTE 322 R + L S G + R Q PGL +IEAP G GKTE Sbjct: 216 RDVGLLPAWSADAGAVETLFGRRFGREARPAQEEAIRAAQAITGPGLMIIEAPMGEGKTE 275 Query: 323 TALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLF-SSPNLILAHGNSRFNH 381 ALA L ++ +IFALPT AT++AM+ R S+ LAH + N Sbjct: 276 AALAAGEVLAERFGCGGLIFALPTMATSDAMVDRFTGWLRGAAQSAQPFFLAHSKAPLNP 335 Query: 382 LFQSIKSRAITEQGQE----EAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHR 437 F ++++ + T A V KK L + TIDQVL + L +H Sbjct: 336 TFAAMRTLSPTTGDGGVDGCGAGVAVALEWLTGRKKGMLANFVIGTIDQVLYAALRGRHV 395 Query: 438 FIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDT 497 +R L + V+++DEVHA D YM L VL+ G VILLSATLP ++Q+LL+ Sbjct: 396 ALRHLALAGKVVVIDEVHAADVYMAVFLRDVLRWLGAYGVPVILLSATLPAARRQELLNA 455 Query: 498 YGLHTDPVENNS----------------------------------------AYPLINWR 517 Y P S YPLI Sbjct: 456 YSTGARPATPASPTARASRRRRPRALTSAGPPPPSCDEATASGEGLAGAGPLPYPLITIA 515 Query: 518 GVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLV 577 G + A R + + +++ + AA+ G V +I N V Sbjct: 516 GAGSMVQVAPAAAGLARTVRVEFASD--------DESELVDLVRAASQGGGVVGIIRNTV 567 Query: 578 DVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNV---GRILVA 634 AQ L+ +V + L H+R+ DR ++ +++ G G+ RI+V Sbjct: 568 GRAQRSAAVLRAELGEEV-VTLTHSRYLATDRMRRDRDLLAELGAPGQARRMPGPRIVVG 626 Query: 635 TQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGF-EIPVATILLPDGE-- 691 TQV+EQSLD+DFD L+T PADL+ QR+GRLHRH R G P ++ + + Sbjct: 627 TQVLEQSLDIDFDLLVTDLAPADLILQRMGRLHRHRRHAHERGLMTKPRCVVVGANWDAD 686 Query: 692 --GYGRHEHIYSNVRVMWRTQQHIEE--LNGASLFFPDAYRQWLDSIYDDAEMDEPEWVG 747 R + + R + G + P + +D Y W Sbjct: 687 PVEPDRGSVAVYGLAALLRAAVVLRSDGSPGRDIELPADIPRLVDQAYAAEVEVPEAWCA 746 Query: 748 NGMDKFESAECEKRFKA-------------RKVLQWAEEYSLQDNDETILAVTRDGEMSL 794 D + A+ E + + W+ + A RDGE L Sbjct: 747 TFDDAEQKAQQESAGRTTGAEMFSIGKVPVLDLFGWSHANAGDAEGHDGRAKVRDGEDGL 806 Query: 795 PLLPYVQTSSGKQLLD--------GQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVD 846 +L Q G +L + + A+A + +P S + Sbjct: 807 EVLVVQQRGDGWFVLPWLSDCGGAELPRDAAPEPRLARAVAQCSLRLPRQL--SVWRIDQ 864 Query: 847 EDGLLWLEGKQNLDGWVWQGNSIVITYTGDE 877 G L +G+ + W +V+ + D Sbjct: 865 VIGELERQGRASWQQSPWVRGELVLPLSEDL 895 >UniRef50_C2GEZ0 Helicase n=1 Tax=Corynebacterium glucuronolyticum ATCC 51866 RepID=C2GEZ0_9CORY Length = 894 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 197/917 (21%), Positives = 323/917 (35%), Gaps = 68/917 (7%) Query: 7 ICHYWGKS-SKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKA 65 W K+ +K+ G ++ L+ H LD AAVA + + E L R Sbjct: 8 YLELWAKTINKTGNNGASLYPLLPHLLDTAAVARALYTHWLRPGLQDLVQEQLGP-RAVD 66 Query: 66 WLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQD 125 + + +HD GK + FQ + A L Q RK + L F +D Sbjct: 67 VVSWICGIHDCGKANPIFQGQLANKK----AEEADLWADVRQNIRKSGRCSFDLSDFVRD 122 Query: 126 SLSEQSLGDF----FSFFDAAPHPYESWF-PWVEA-VTGHHGFIL-----HSQDQDKSRW 174 S ++L F W E GHHG+ ++D+D + Sbjct: 123 QCSRRALRRHEQVSALFLSGWETFNTFGEEKWAEIPALGHHGYFDLPFAAPNRDEDHLKH 182 Query: 175 EMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGS- 233 L D Q W L+ A + P S LL+G LAD + S Sbjct: 183 AFREDLDRLGWTDAQCSLNWH--LQRALHLSADDLDIECSPTVSVLLSGLTVLADRIASQ 240 Query: 234 --WTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVL-ELSGLVSNKRCYEGVHALLDNG 290 W L + L + + A + E G+ + E A + Sbjct: 241 DSWIAETKRLEETGQLTFTEPLDRWVDTQADRAVDAVDETIGIYRGWKSEEDARADILGS 300 Query: 291 YQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATA 350 + PR Q AL GL I APTGSGKTE A L + ++F LPT AT Sbjct: 301 FTPRDAQ--AVALTCGEGLVTIMAPTGSGKTEAAF-----LRHSTRDERLVFLLPTMATT 353 Query: 351 NAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQS 410 NA++ R + + + LAH ++ + + S E E + Sbjct: 354 NALMKRTQKVFRRQRNVAS--LAHSSATLEDFYTNSVSVFDDECSGSETGGLFPTSFVRK 411 Query: 411 NKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLK 470 + L + V T+DQ L + LP+K + L + + ++VDEVH D Y L+ VL Sbjct: 412 GLERLLASVTVATVDQALKASLPIKWVHLLLLALANAHVVVDEVHTMDPYQGEFLKNVLY 471 Query: 471 AQADVGGSVILLSATLPMKQKQKLLDTY--GLHTDPVENNSAYPLINWRGVNGAQRFDLL 528 V L+AT P Y G + + ++P + G AQ Sbjct: 472 WLGKTRARVTFLTATFPATMMNDFTKAYDAGAGREVPPTDVSFPSL-IDGSGAAQELSCG 530 Query: 529 AHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLK 588 ++ Q E ++ R A++ +ICN V Q L+ Sbjct: 531 SY------NVGFQLEHADKQRIVDKHVEWARNQRNLYPDARIGIICNQVARCQEIASMLR 584 Query: 589 ELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDW 648 ++ + H+ T R + N++ G +G G +V TQ +E SLD+D D Sbjct: 585 ---GEGHEVIVLHSSLTALHRSQVSNQLEKLLGPDGT-GWGITVVGTQAIEASLDIDLDL 640 Query: 649 LITQHCPADLLFQRLGRLHRHH---RKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRV 705 + CP+ + QR GRL R R R G + IL+P Y +H + Sbjct: 641 MSIDLCPSTSILQRAGRLWRRDDPERVNRVPGASLKTIHILVPH--DYASGDHYPYQPAL 698 Query: 706 MWRTQQHIEELNGASLFFPDAYRQWLDSIY---DDAEMDEPEWVGNGMDKFESAECEKRF 762 + RT+Q +E + + PD ++++D+ + + + E V + ++ ++ Sbjct: 699 LTRTRQWLENHP-SPIAVPDDCQEFVDACTVRLSELDDETDEDVSHDLEYHADVAYRRQT 757 Query: 763 KARKVLQWAEEYSLQDNDETILAVT----RDGEMSLPLLPYVQTSSGKQLLDGQVYEDLS 818 ++++ + I ++ R L P + +Q++ + Sbjct: 758 ALNRIVKIPDVLEPDQYLSRIGLLSGGPERLDLDFADLTPRLIDRPTRQVITIDATGETP 817 Query: 819 HEQQYEAL--------ALNRVNVPFTWKRSFSEVVDED--GLLWLEGKQNLDGWVWQGNS 868 E + N + S SE V E L K +Q Sbjct: 818 GALLPEKFFTLDLYEPSKNLIRKLLHGSLSISERVSEQFAERLRPPIKSKSVLSRYQILD 877 Query: 869 IVITYTGDEGMTRVIPA 885 Y G+ +P+ Sbjct: 878 ATGVYDPVTGLRTSLPS 894 >UniRef50_D1Y491 Superfamily II DNA and RNA helicase n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y491_9BACT Length = 910 Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 219/916 (23%), Positives = 337/916 (36%), Gaps = 79/916 (8%) Query: 11 WGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLS-KQRVKAWLLF 69 WGK + L+ H DVAAV + D ++ Q F R + ++ L Sbjct: 10 WGKFD---VESGRKQPLVAHLTDVAAVFEQIMDGAL-FQRHFQRVLGRPLSETLRERLCV 65 Query: 70 FIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSE 129 HD GK +FQ K E KL P + + Sbjct: 66 LALWHDYGKISPKFQLKYREKIEKLTPKRSINHIDTAFNLSSIR----------YKGKIW 115 Query: 130 QSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASL-ASYAAQDK 188 L D F++ + HHG + + D ++ D Sbjct: 116 NELLDVMHFWENEDQKRILHDYLTWVILAHHGAVPTQERCDMAQDNSSRKCWERGVNLDP 175 Query: 189 QAREEWISVLEALFLTPAGLSINDIP--PDCSSLLAGFCSLADWLGSWTTTNTFLFNEDA 246 Q ++ L + A + +P P L AG LADW+ S + + DA Sbjct: 176 QKALGELAALSQRWYPAAFAAGGGLPEEPCFQHLFAGTLMLADWIASDRSLFPYCGECDA 235 Query: 247 ---PSDINALRTYFQDRQQDASRVLELSGL-VSNKRCYEGVHALLDNGYQPRQLQVLVDA 302 ++ A +VL + +KR G+ P +Q VD Sbjct: 236 RGEQRPSPEEEDSLSYSRRQAEKVLASLVWTLDDKRPDRAPDFAAQFGFSPNGIQQAVDK 295 Query: 303 LPVAP--GLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEAS 360 L ++P GL ++EA TGSGKTE AL +L+ D + FA P + A + RM Sbjct: 296 LVLSPDGGLYILEAETGSGKTEAALRLYTRLLAAGYVDGLYFANPLRFAATQLFERMVKF 355 Query: 361 ASHLFSSPNLIL-AHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQI 419 ++ F + + + E E + W ++ K+ I Sbjct: 356 SASSFGQEQIPVTLAVPGYLRVNDREGLRVGRFEVDWREVNDRAVGWYAEQPKRFLASPI 415 Query: 420 GVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSV 479 TIDQ L++ L V H +R + RS+L+VDEVH+ D YM+ L+ +++ VGG V Sbjct: 416 ASGTIDQALLAGLRVPHAHMRAAALQRSLLVVDEVHSSDAYMSALICGLIELFRRVGGHV 475 Query: 480 ILLSATLPMKQKQKLLDTY---GLHTDPVENNSAYPLINWRGVNGA-----QRFDLLAHP 531 +L+SATL + ++ L + G PL V L A Sbjct: 476 LLMSATLGSESTERYLKVWNENGPQRPEQTETERLPLTEAVKVPYPLLTSSAEPPLTAAS 535 Query: 532 EQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELN 591 +Q EPI + + G V ++ N V A+ ++ L+++ Sbjct: 536 PSRGKSVRMQREPIQQDPQAVAQLATQNLAPFDEKGPCVLILRNSVRQARRTFRALRKIL 595 Query: 592 NTQVDI------DLFHARFTLNDRREKENRVISNFGKNGKRN----VGRILVATQVVEQS 641 + L H+R+ DRR + V FGK +LVATQ +EQS Sbjct: 596 PAEKIFSVNEIPTLHHSRYAPEDRRLLDREVGRRFGKEAVPPDQLRDCCVLVATQTLEQS 655 Query: 642 LDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGE---------- 691 LDVDFD +IT CPAD++ QR+GRL RH R+ RPAGFE P +LLPD + Sbjct: 656 LDVDFDLIITDLCPADVMLQRIGRLFRHQRR-RPAGFERPRCVVLLPDADCGWLLGAEAR 714 Query: 692 GYGRH-EHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEP------E 744 YG E Y N+ + T + +EE P+ R +++ + E Sbjct: 715 SYGYGTERAYVNLPSLAATWRLLEE--NEMWNLPEQNRFFVEQSTHPEALRRLVNGLGAE 772 Query: 745 WVGNGMDKFESAECEKRFKARKV-LQWAEEY---SLQDNDETILAVTRDGEMSLPLLPYV 800 +++ E + + + AR L+W E + + E TR G M L + Sbjct: 773 KWQRALNEVEGLKLAQGWIARTARLRWDEAFKDVKIACGKEMERIATRLGVMDLSVKC-- 830 Query: 801 QTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLD 860 S L G+ L L K+ EDG +E + Sbjct: 831 -DKSVASPLKGE---KLKSFSIPAWLLGTDAAALEAQKK------KEDGTYLVEPRPEGG 880 Query: 861 GWVWQGNSIVITYTGD 876 + S Y + Sbjct: 881 LLSFALGSRKYYYDSE 896 >UniRef50_Q6NEQ4 Putative helicase n=1 Tax=Corynebacterium diphtheriae RepID=Q6NEQ4_CORDI Length = 876 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 197/915 (21%), Positives = 338/915 (36%), Gaps = 80/915 (8%) Query: 1 MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVV--LQNTFCRNEML 58 M P + + W K + L+ H LD AAVA WD + L+ F Sbjct: 1 MNPHEEL---WAKQKGLAKP----YPLLAHLLDSAAVAGALWDHWLRQDLRQMFIEELG- 52 Query: 59 SKQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAG 118 + + F + HDIGK FQY+ ++ + + + + Sbjct: 53 --SNAREIIQFVVGSHDIGKATPLFQYQ-KAQKGEVWDSIRYAIDRTGRYQKPLP----S 105 Query: 119 LYWFNQDSLSEQSLGDFFSFFDAAPHPYESW----FPWVEAVTGHHGFILHSQDQDKSRW 174 Y + S + SF + S A+ GHHG + R Sbjct: 106 SYLVKKTSGGPNRHEQWSSFASKNEYLKPSAAAKENWIGLAIGGHHGRF---EPVGYGRH 162 Query: 175 EMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSW 234 + A+ + A+++ + LE +++ P+ + +L+G LAD + S Sbjct: 163 QRKAAEDLAKSGWSAAQQDLLRALEKASGITRASLPSELSPELTLVLSGLTILADRISST 222 Query: 235 TTTNT---FLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGY 291 + + ++ + + V + G+ +E + GY Sbjct: 223 ESFVITGARMIDDGTLHLATPIDWLKTRKLDSEKHVAKTVGIYHGWNNHESAIHSILKGY 282 Query: 292 QPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATAN 351 PR LQ + L GL + APTG+GKTE A + ++ D +IF LPTQAT+N Sbjct: 283 DPRPLQTIA--LQNQVGLLNLMAPTGNGKTEAA---ILRHSLKEN-DRLIFLLPTQATSN 336 Query: 352 AMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCC------- 404 A++ R++ S + LAH + +Q+ S + + Sbjct: 337 AIMRRVQGIYSDTPNVA--ALAHSLASVEDFYQTPLSVFDDHYDPSKEQFESSMSGGLYP 394 Query: 405 QWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGL 464 S L I + T+DQ L + LP K +R L + + +++DEVH D Y L Sbjct: 395 SSFVCSGAARLLAPICIGTVDQALATALPGKWIHLRILALANAHIVIDEVHTLDHYQTAL 454 Query: 465 LEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQR 524 LE +L A + + L+AT+P Q+ KLL YG + +P R Sbjct: 455 LENILPILAKLKTKITFLTATMPSWQRTKLLTAYGGEDLQIPPTV-FPAAETVLPGQFNR 513 Query: 525 FDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCY 584 + + E ++ + A++ LICN V AQ Sbjct: 514 TLI----DSDSTTIDFTMEETSYDHLVESHVKWHQTTRLNAPHARIGLICNTVKRAQEIA 569 Query: 585 QRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDV 644 L++ T I L H+R T RR + S G NG R +V TQ +E SLD+ Sbjct: 570 AALEK---TNDRIVLLHSRMTTEHRRRSAELLESLLGPNGNRKTIT-VVGTQAIEASLDI 625 Query: 645 DFDWLITQHCPADLLFQRLGRLHRHH---RKYRPAGFEIPVATILLPDGEGYGRHEHIYS 701 D D L T+ CPA L QR GR+ R + R R P++ + + + E + ++ + Sbjct: 626 DLDILRTELCPAPSLVQRAGRVWRRNDPYRSSRITADHKPISVVFIAEAEDWQVLPYLRA 685 Query: 702 NVRVMWRTQQHIEELNGASLFFPDAYRQWLDS-------IYDDAEMDEPEWVGNGMDKFE 754 RTQ+ +E+ N +F P ++++D+ + ++D +G + K + Sbjct: 686 ETS---RTQRWLEKHN--QMFLPQMAQEFIDAATVDLDTATSEMDLDALALMGIHLMKAD 740 Query: 755 SAECEKRFKARKVLQWAEEYSLQDNDETI-LAVTRDGEMSLPLLPYVQTSSGKQLLDGQV 813 A+ + +++L + I A TR E L + + + G Sbjct: 741 GAKA-RIQDVLNSDSKVSDFALLTSKNEIDEAQTRLIEEG-THLRIILGDENESIPGGWK 798 Query: 814 YEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVIT- 872 + S + A +R ++ S +V E L + + Sbjct: 799 HGLSSLLKLK---ASDRESLRTALLASIPLLVSEKQKQLLYQHNLVPLSSSKTVLAGFYF 855 Query: 873 -------YTGDEGMT 880 Y+ + G Sbjct: 856 LPKAQNFYSKNLGFI 870 >UniRef50_C2KP49 Helicase n=1 Tax=Mobiluncus mulieris ATCC 35243 RepID=C2KP49_9ACTO Length = 907 Score = 401 bits (1029), Expect = e-110, Method: Composition-based stats. Identities = 194/936 (20%), Positives = 334/936 (35%), Gaps = 109/936 (11%) Query: 8 CHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQS--VVLQNTFCRNEMLSKQRVKA 65 WGK SK+ + L+ H D A A+ +D LQ + + V Sbjct: 6 EQIWGKYSKNYG----FYPLLAHLYDTAVCAEIVFDYWLRPGLQEILKNDFG---ESVLQ 58 Query: 66 WLLFFIALHDIGKFDIRFQYK------------SAESWLKLNPATPSLNGPSTQMCRKF- 112 + LHD+GK + FQ + E + + ++ + R Sbjct: 59 VVSLVAGLHDLGKGNPVFQGQQAAYETNKDLPVIREHFNQFANTEYFIDVKRREANRPSV 118 Query: 113 -NHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDK 171 H G D F + V GHHG D Sbjct: 119 RRHEQVGAL-------------DLFGDESKLFKDRVTEHWLAAVVAGHHGTFFRETKSDD 165 Query: 172 SRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWL 231 R ++ ++ + K RE+ S++E I P LL G ++AD L Sbjct: 166 ER-QIDSTKLLRSGVWKTVREDSTSLIERFCGLHIADLPRVISPISLMLLTGLVTVADRL 224 Query: 232 GSWTTT---NTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLD 288 S + S N Q+ +RV L G+ L Sbjct: 225 SSGDDWVAEQAAALKSGSISLDNPDEWKSYIFQKMLNRVKLLLGIF---EPLSNAQETLL 281 Query: 289 NGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQA 348 + PR Q + G+ I + TGSGKTE AL L ++ +IF LPTQA Sbjct: 282 GCWNPRPAQKIA--QNSGDGMLTIMSATGSGKTEAAL-----LRHANASERLIFLLPTQA 334 Query: 349 TANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQS-----IKSRAITEQGQEEAWVQC 403 T NAM+ R++ + + +S LAHG + + + T+ G A Sbjct: 335 TTNAMMRRLQEAFQN--TSNVGTLAHGMAILENFYSQKITVTEHRDDSTDTGDVSARGLY 392 Query: 404 CQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNG 463 + L + V T+DQ +++ LP+K +R L + S +++DEVH Y Sbjct: 393 PTEFVRQKSARLLAPVVVATVDQAVMASLPMKWTALRLLALANSHVVMDEVHTLSPYQTR 452 Query: 464 LLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVE----NNSAYPLINWRGV 519 L+E ++ G V LLSAT+P + ++L + Y + +P V Sbjct: 453 LIEPLMTWLGRTGTRVTLLSATMPHEHLEQLTNAYTGNLSHENTTRIEEYDFPATASVSV 512 Query: 520 NGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDV 579 G + L + ++ I + ++++ + I A++ + N +D Sbjct: 513 GGKVKVSALKI-DINRDQYQINYDLKEVSNISEAHIDWAKQIHEKYPKARLGVFVNTIDR 571 Query: 580 AQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVE 639 AQ L +L ++ + H+R T R E E + + G G G ++V TQ +E Sbjct: 572 AQEIAGGLLKL---GCNVMVLHSRLTAKHRSEVEEALFNALGPRGNA-EGLVVVGTQAIE 627 Query: 640 QSLDVDFDWLITQHCPADLLFQRLGRLHRHH---RKYRPAGFEIPVATI----LLPDGEG 692 SLD+D D + T PA L QR GR R R+ R G I L+ + G Sbjct: 628 ASLDIDLDLISTDLAPAPSLLQRFGRAWRRQDTKREQRIPGMSAMQVQIVAGMLIDENAG 687 Query: 693 YGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDS--IYDDAEMDEPEWVGNGM 750 Y I + RT + + GA + P+ + +++ + + D ++ Sbjct: 688 YQEKWWIPYLYSPLRRTCKWLRGHRGA-IVAPNDIQSFVEQSWVSAEELEDAEDF----- 741 Query: 751 DKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVT-RDGE--------------MSLP 795 D++ S E++ + + W Y + + + +T +DGE + Sbjct: 742 DEYASILQEQQKATQWINSWPMFYRGEARMDALRHLTWQDGENAEGESPRTRSIERENRQ 801 Query: 796 LLPYVQTSSGKQLLDGQVYEDLSHE--------QQYEALALNRVNVPFTWKRSFSEVVDE 847 L+ + S +G V E S + + ++NV + + ++ Sbjct: 802 LIILGEGSDAPGAFNGTVEELRSLRVDRNGMPSSRIKEALRAQINVSSA--KMIKVLREK 859 Query: 848 DGLLWLEGKQNLDGWVWQG---NSIVITYTGDEGMT 880 + G++ + TY G+ Sbjct: 860 VEQYPVLGEETTPLLRGRQVVRLGDDFTYDTLFGLQ 895 >UniRef50_B5GY58 Crispr-associated helicase cas3 n=1 Tax=Streptomyces clavuligerus ATCC 27064 RepID=B5GY58_STRCL Length = 1004 Score = 400 bits (1028), Expect = e-110, Method: Composition-based stats. Identities = 176/907 (19%), Positives = 286/907 (31%), Gaps = 106/907 (11%) Query: 10 YWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVV--LQNTFCRNEMLSKQRVKAWL 67 W KS G ++LL+ H LD AAVA WD+ + + R + Sbjct: 4 LWAKS--PDRAGGTMNLLLSHLLDTAAVAGVMWDRFLPRVVHEELDRVAGGPGRGRGLL- 60 Query: 68 LFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSL 127 ++ +HD GK Q + E +L A + ++ H AG + Sbjct: 61 MWLCGIHDFGKATPSHQRQRPELAAELPAAGLGWEEEIGE-RYRWEHAPAGAFLLR---- 115 Query: 128 SEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQD 187 A P E V GHHGF + + Sbjct: 116 ---------PLLTGAGWPQEHIRWVWPLVAGHHGFFPVESALGSPPAALRR--VDGDSAW 164 Query: 188 KQAREEWISVLEALFLTPAGL-------SINDIPPDCSSLLAGFCSLADWLGSWTTTNTF 240 + R++ + V+ GL ++G +ADW+ S Sbjct: 165 EAVRQKLMCVILDELGFGDGLDGLAALCPARPPSRALQLQISGLVVMADWIASGPENF-- 222 Query: 241 LFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLV 300 + + R + A + L G G+ PR +Q L Sbjct: 223 ---PGVDVLEDVSYAGARRRAEAAWAAIGLQGGFRYLAEPGPGTFRRRFGHDPRPVQELA 279 Query: 301 DALP---VAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRM 357 PGL ++EAP G GKT L A L + A V +P +T + M R+ Sbjct: 280 ARAARELDGPGLLIVEAPPGEGKTWAGLIAAETLAARTGAGGVFVGMPVHSTCDPMFRRV 339 Query: 358 EASASHLFSS--PNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSN---- 411 + + P + L HG + + + + EE Sbjct: 340 REWVRGIDEALAPAVALLHGRRTLDRSWNVLLPQDAVGHCGEEPAAAVHGTAGDPRLVPA 399 Query: 412 ------KKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLL 465 + L V +DQ+L + K +R G+ V+++DE+HA D + L Sbjct: 400 QWFFDYARGLLCPFVVAPLDQLLYATTRTKFVMLRMAGLPGKVVVLDEIHAVDVHAQQYL 459 Query: 466 EAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHT--------DPVENNSAYPLINWR 517 + L+ V+LLSATL Q++ L+D Y D + YP + Sbjct: 460 QEGLRWLGQARVPVVLLSATLTAGQRRSLVDAYLAGAAGEEEYTYDGLPQPDGYPSVTAV 519 Query: 518 --------GVNGAQRFDLLAHPEQLPPRFSIQP------EPICLADMLPDLTMLERMIAA 563 + + I P E + + D + + A Sbjct: 520 RYDHGGDGAAPRCVVRRCASALRERDVIVEILPEGPEGAEDTAVDRAVADRAVAALLGEA 579 Query: 564 ANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKN 623 G + ++ N AQ + L+ ++ L H +FT R E + + Sbjct: 580 LADGGRALVVRNTAHRAQTLWTGLRTRFGD--EVLLLHRQFTAERRAEIADDCLRQLAPG 637 Query: 624 G-KRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPV 682 +R I+VA Q EQ+ DVD D L+T P DLL QR GRLHR RP P Sbjct: 638 SPERPRRLIVVADQTAEQAFDVDVDLLVTDLAPIDLLLQRAGRLHRDTTVVRPVRLAAPR 697 Query: 683 ATILLP--------DGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSI 734 + R +Y ++ R + P A + + Sbjct: 698 LVVTGTTAVSGTGGPPRFPARSTALYGRHPLL-RAAHLVHRAARTGARLPGAVPRLVGEG 756 Query: 735 YDDAEMDEPEWVGNGMDKFESAE---------------CEKRFKARKVLQWAEEY---SL 776 Y D + D P+ +R R Y Sbjct: 757 YADGDTDLPDGWRATAGAAREQARRDRERRVERAVPRLLTRRGDGRGRTLGGLSYIGLPP 816 Query: 777 QDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDL-----SHEQQYEALALNRV 831 D DE + A+ RD + + V+ +G + G ++ + + + V Sbjct: 817 ADGDEGLSALVRDRA-AAEAILLVRDGTGYRTPCGTALGPEGFVADRDDRLVDLVRRHTV 875 Query: 832 NVPFTWK 838 +P +W Sbjct: 876 ELPVSWW 882 >UniRef50_B4S8Q3 CRISPR-associated helicase Cas3 n=3 Tax=Bacteria RepID=B4S8Q3_PROA2 Length = 860 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 202/850 (23%), Positives = 328/850 (38%), Gaps = 124/850 (14%) Query: 27 LIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYK 86 ++ HC V VA + V + + A+HDIGK FQ K Sbjct: 43 VLDHCSIVGEVARELLSRMPVFLRSALFPDGTE---------LVAAIHDIGKVSPSFQEK 93 Query: 87 SAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPY 146 N H E++ G AA Sbjct: 94 IYRGT-----DGYIWNTLDGLSFSNPEH--------------EKNWGGHAGVSMAAARAR 134 Query: 147 ESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPA 206 E + HHG+ + ++ REE + +L+ Sbjct: 135 RIGKYIPEIIGQHHGYSPELNGL------VAEDEVFGGNAWQKMREELLCILKDSLKKEF 188 Query: 207 GLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASR 266 N + + +AG ++ADW+GS +F + D + Sbjct: 189 PAIENALQ---AKAIAGLTTVADWIGSG----SFFDDPD------------EQWLPLIKH 229 Query: 267 VLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALA 326 ++ +G V +G+ ++PR++Q L+ PG+ ++EAP G GKTE AL Sbjct: 230 AVDSAGFV-QPEIIKGLGFSEIFSFRPREIQQLLIEQATQPGVYILEAPMGIGKTEAALY 288 Query: 327 YAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNL----ILAHGNSRFNHL 382 A+ +I A + FALPTQ T+N + R+ + + + +L H N+ Sbjct: 289 AAYSIIAAGGATGLYFALPTQLTSNRIHDRVNDFLKKILAPDCIHRQALLLHSNAWLK-- 346 Query: 383 FQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGL 442 E W + K+ L V TIDQ L++V+ VKH F+R Sbjct: 347 ----------EIEMGADGGPGGNWFNSG-KRGILAPFAVGTIDQALMAVMNVKHGFVRTF 395 Query: 443 GIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHT 502 G+ V+I+DEVH+YD Y +L+ +++A + +VI+LSATL +++ +L Sbjct: 396 GLAGKVVILDEVHSYDAYTGTILDKLVEALRKLQCTVIILSATLTKERRMNILQQP---- 451 Query: 503 DPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIA 562 ++ +YPLI +G + A +P + + + D+ +E + Sbjct: 452 ---VHDISYPLITASQNHGESVIETTA---VVPGKTVVSIQSSSYFDL-----AIEEALT 500 Query: 563 AANAGAQVCLICNLVDVAQVCYQRLKEL-NNTQVDIDLFHARFTLNDRREKENRVISNFG 621 A G QV I N V AQ + L +++ L H+RF DR E ++ +G Sbjct: 501 RAEGGQQVLWIENTVAEAQNSFSILAARSAGMEIECGLLHSRFIKADRERNEEYWVTRYG 560 Query: 622 KN---GKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGF 678 K +R GRILV TQV+EQSLD+D D+L+T+ CP D+L QR+GRL RH +RP G Sbjct: 561 KGCDELRRQSGRILVGTQVLEQSLDIDADFLVTKICPTDMLLQRIGRLWRHGDTFRPVGA 620 Query: 679 EIPVATI-------LLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWL 731 V + LL + +G ++YS V+ RT +L A + P+ R + Sbjct: 621 VCEVLILKPEFHSALLNPEKEFGPTANVYSPY-VLLRTLVVWNDL--ADIVLPEQIRSLI 677 Query: 732 DSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGE 791 ++ Y + E + M A+ ++ ++L A TR E Sbjct: 678 EATYMEIE-------EHPMMLKYKAKLQQEKAKLELLALGGVSEGTKTLPESKASTRYSE 730 Query: 792 -MSLPLLPYV-------QTSSGKQLLDGQVYE---------DLSHEQQYEALALNRVNVP 834 S+ +L Q + +LLDG +LA ++V Sbjct: 731 QESVEVLLLRSFLFDRNQNVTNVKLLDGSDLFLPLVCSKKSKKEQRSLAASLAQYTLHVA 790 Query: 835 FTWKRSFSEV 844 V Sbjct: 791 DYLAPEVISV 800 >UniRef50_C5V9N6 Putative helicase n=1 Tax=Corynebacterium matruchotii ATCC 14266 RepID=C5V9N6_9CORY Length = 894 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 178/857 (20%), Positives = 312/857 (36%), Gaps = 62/857 (7%) Query: 11 WGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQS--VVLQNTFCRNEMLSKQRVKAWLL 68 W K T + L+ H LD +AV + + L++ + V L+ Sbjct: 12 WAKERGLETP----YPLLGHLLDTSAVMGELYHRWLRPGLRSLLIDELG---EHVDKLLM 64 Query: 69 FFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLS 128 LHDIGK + FQ ++ + +L + + + Sbjct: 65 LVAGLHDIGKANPHFQQQNKQQGETFTAIRENLRRHGLTVSP----DYMSYFSETRAMRR 120 Query: 129 EQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAA-QD 187 ++ D + A+ GHHG + ++ + Sbjct: 121 HENHSAIILDEDIETDMDAADSWLALALVGHHGKFAAFNPTRATDLKITKIKQIFDTTPW 180 Query: 188 KQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNT---FLFNE 244 + + I+ +E + + P + L++G LAD + S +E Sbjct: 181 GKIHKALIAQVELGVGMSRDELPDHVSPTVTVLISGLVVLADRIASQLDWTQTAQREMDE 240 Query: 245 DAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALP 304 S + + + + + GL N E A + +G+ PR Q AL Sbjct: 241 GIISLADPKQWVTHRAAESVEIIKKTVGLYQNWSTREAARADILDGFPPRFAQ--AAALE 298 Query: 305 VAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHL 364 GL + A TGSGKTE AL L + +IF LPTQAT NA++ R++ + Sbjct: 299 QGDGLWNVMAATGSGKTEAAL-----LRHATRNERLIFLLPTQATTNAIMRRVQKAFK-- 351 Query: 365 FSSPNLILAHGNSRFNHLFQ---SIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGV 421 ++ LAHG + + S+ + + Q+ + +++ + L + V Sbjct: 352 GTTNVASLAHGLAITEDFYSQNISVSDVMVGDNYQDNGGLFPTEFVKSGASR-LLAPVCV 410 Query: 422 CTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVIL 481 T+DQ ++ LP K +R L + + +++DEVH D Y + LLE +L A + Sbjct: 411 GTVDQAILGSLPTKFNHLRLLALANAHVVIDEVHTLDAYQSELLEDLLHWWAATHTPITF 470 Query: 482 LSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQL----PPR 537 L+AT+P Q++K Y H ++ R + P + P Sbjct: 471 LTATMPAWQQEKFKQAYSKHDSDPARFPSFTTWLPRSGDEIDSDPATDAPPVVIPTEPYT 530 Query: 538 FSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDI 597 + +P+ ++ + A A++ +ICN VD AQ Q + + + Sbjct: 531 IDLTVDPVPYDQLVDSHIRWIQAQRQAYPQARIGIICNTVDRAQAIVQA----FDHEKPV 586 Query: 598 DLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPAD 657 L H+R T RR + + GKNG+ ++V TQ +E SLD+D D L T+ CPA+ Sbjct: 587 -LLHSRMTAEHRRRNAEELEQSIGKNGEA-TTVLVVGTQAIEASLDIDLDALRTELCPAE 644 Query: 658 LLFQRLGRLHRHHRKYRPAGFE-IPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEEL 716 L QR GRL R R + TI + + + + R I L Sbjct: 645 SLIQRAGRLWRRDDVARADRVPGLAHKTISIAAIDNPKEWQTKPYFAAQLDRVAHWIAAL 704 Query: 717 NG----ASLFFPDAYRQWLDS----IYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVL 768 + L FPD + +++ + + + N E AE + A Sbjct: 705 DEVDGKKPLRFPDQIQDFINQSSMGLTELFTTLNDDEDDNASGMDEIAELIHKINAGNNA 764 Query: 769 QWAEEYSLQDN------------DETILAVTRDGEM-SLPLLPYVQTSSGKQLLDGQVYE 815 + L D+ DE TR + ++P + + T + G + + Sbjct: 765 RIDFSTVLADDATNTDFFTITHKDELAETATRLIDRITIPAILHDPTGTIPGAWTGSIAD 824 Query: 816 DLSHEQQYEALALNRVN 832 S + + Sbjct: 825 LNSIKWHDTEAIREALR 841 >UniRef50_Q0AA29 CRISPR-associated helicase Cas3 n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0AA29_ALHEH Length = 871 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 201/851 (23%), Positives = 303/851 (35%), Gaps = 79/851 (9%) Query: 10 YWGKSSKSLTKG-NDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLL 68 WGK K L HC DVA V + + L Sbjct: 23 LWGKLHKGPAGEVEAWLPLADHCTDVAFVFLALCRTNAAHRALSQAIGHAPTPVHLERLA 82 Query: 69 FFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLS 128 LHDIGK + FQ K+ + ++ D Sbjct: 83 ALAFLHDIGKCNHGFQAKAR--------------REPRDTAGHVH--EISALLYDPDLQK 126 Query: 129 EQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFI---LHSQDQDKSRWEMPASLASYAA 185 F + E + A HHG H++ R+ +P Sbjct: 127 RLLDSLGFDEIASWFDDAEGTLGMLLASISHHGKPIKLDHTETNRYRRYWLPRDGIDPLE 186 Query: 186 QDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNED 245 F A P+ AG LADW+GS F Sbjct: 187 DLTNLTLTVRQAFPQAFTGDASPLSP--TPELQHRFAGLVMLADWIGSHEGFFPFRH--- 241 Query: 246 APSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDN-GYQPRQLQVLVDALP 304 + Q +A + L+ R G+ P LQ + P Sbjct: 242 ---GPECRAAFAQRAASEAITTIGLNSQPFRSRLDPRAGFTDLFPGFSPTALQAALMDPP 298 Query: 305 VAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHL 364 P + + E+ TGSGKTE ALA ++L + DS+ FALPT+ A + R+ + Sbjct: 299 NVP-VMIAESDTGSGKTEAALACFFQLFARGEVDSLYFALPTRVAARELYERILLFVKEV 357 Query: 365 FSS--PNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVC 422 F P ++LA Q++ S Q E + W ++ K+ I V Sbjct: 358 FRDNAPPVLLAVPGYAKVDGEQALPSEDNLWQDDETLRRRERAWAAERPKRFLAAPIAVG 417 Query: 423 TIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILL 482 T+DQ L++ + V H +R + + RS+L+VDEVHA DTYM GLL A+L G +LL Sbjct: 418 TVDQALMATMQVNHAHLRAVCLERSLLVVDEVHASDTYMRGLLRALLDHHTRSGARALLL 477 Query: 483 SATLPMKQKQKLLDTYGLHTDPVENNS----AYPLINWRGVNGAQRFDLLAHPEQLPPRF 538 SATL ++ L + YP + G + + + Sbjct: 478 SATLSADAREAFLTPQSAVPVVPSFSEAIQSPYPALTGSGSAPTPIGGVGTRQKAV---- 533 Query: 539 SIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQR-------LKELN 591 + + + R+ A AGA+V ++ N V A + + L Sbjct: 534 ----QLEPAPYLAEPKALQPRVAEALRAGARVLVVLNTVARAIDFLRAAEADPVVARTLF 589 Query: 592 NTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLIT 651 H RF DR + V FGK +LV TQ +EQSLD+D DWLIT Sbjct: 590 CVNNQTCPHHGRFARADRLILDREVSRVFGKGSPDGAL-LLVGTQTLEQSLDIDADWLIT 648 Query: 652 QHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGE-------------GYGRHEH 698 CP D+L QR+GRLHRH R+ RP GF+ P T+L+P G Sbjct: 649 DLCPMDVLLQRIGRLHRHTRR-RPPGFDTPTCTVLMPAEPSLEAWFDAKGRLHGLAGLGR 707 Query: 699 IYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDE---PEWVGNGMDKFES 755 +Y ++R+ T + I G ++ PD R+ +++ + P W G+ + Sbjct: 708 VYPDLRIAQLTIERIG--AGCTIRIPDDNRELIETTVHPERLARFTGPPWDGHQQQLLGT 765 Query: 756 AECEKRFKARKVLQWAEEY----SLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQL--- 808 A ++ W + + D DE + + L L P + + G+ L Sbjct: 766 ATAHGLAARTALMPWHQPFGPELRFGDFDERLATRLGLEDRRLSLDPPITSPFGQTLHEL 825 Query: 809 -LDGQVYEDLS 818 + G + D Sbjct: 826 PVPGWMAGDTD 836 >UniRef50_B8FDH5 CRISPR-associated helicase Cas3 n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FDH5_DESAA Length = 851 Score = 396 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 211/835 (25%), Positives = 326/835 (39%), Gaps = 107/835 (12%) Query: 30 HCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYKSAE 89 HC V VA W + + + + A+HDIGK FQ K Sbjct: 41 HCKIVGMVAREWMQRQLEWL--VQKLFPCGSE-------LIAAIHDIGKISPGFQEKIYR 91 Query: 90 SWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESW 149 S + P L P ++G F+ AA + Sbjct: 92 SLDMV----PGLAAPDLDK----------------------NVGYHFTVSQAAARDLGRY 125 Query: 150 FPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLS 209 P E V HHG S P + R + L F + Sbjct: 126 VP--EIVGRHHGISPASPGY-------PDDEIYGGPTWQAERMNTVKRLREYFQSSWPEV 176 Query: 210 INDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLE 269 ++DI D L+G ++ADW+GS DAP + + ++ + ++ L+ Sbjct: 177 VSDIHADV---LSGLTTVADWIGSALDI-----CPDAPQGLPSD----EELSRMTAKALD 224 Query: 270 LSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAW 329 +G + R G+ + P LQ + +PG+ V+EAP G GKTE AL A+ Sbjct: 225 DAGFI-RPRINSGLTFKDIFSFSPYSLQAEMAQAVSSPGVYVLEAPMGMGKTEAALFAAY 283 Query: 330 KLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSP----NLILAHGNSRFNHLFQS 385 K +++ A V FALPTQ T++ M RM + N +L H + Sbjct: 284 KALEENRATGVYFALPTQLTSDKMHERMNKFLDVILDQNCPHKNALLLHSAAWLRA---- 339 Query: 386 IKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIG 445 E W K+ L V T+DQ L++ + VKH F+R + Sbjct: 340 --------TEMGEDGRPDKSWFDY-RKRGLLAPFAVGTVDQALMAAMNVKHGFVRTFALA 390 Query: 446 RSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPV 505 +I+DEVH+YD Y +L+ +++A ++ +VI+LSATL ++ +L+ Y P Sbjct: 391 GKCVILDEVHSYDAYTGVILDRLVQALREIHCTVIILSATLDTTRRAELI--YSPGETPA 448 Query: 506 ENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAAN 565 + YPLI +G + E+ I P D LE I A Sbjct: 449 SVDDVYPLITAHPNSGPPQAIASPAVEEPEILTRIHP---------DDEEALEEAIDRAQ 499 Query: 566 AGAQVCLICNLVDVAQVCYQRLKEL-NNTQVDIDLFHARFTLNDRREKENRVISNFGKNG 624 G QV I N VD A+ +QRL ++ L H+RF DR E+ FGK G Sbjct: 500 QGQQVLWIENTVDGAREVFQRLGARTAGLGIESGLIHSRFLKVDRETNESYWSGVFGKTG 559 Query: 625 KRNV---GRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIP 681 + GRILV TQV+EQSLD+D D+L+++ CP D++ QRLGRL RH RP G Sbjct: 560 REKRGEQGRILVGTQVLEQSLDIDGDFLVSRLCPTDMILQRLGRLWRHDINVRPKGARR- 618 Query: 682 VATILLP-------DGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSI 734 A IL P D + G+ +Y+ V+ R+ E+ L R + + Sbjct: 619 EAWILGPALEAAQADRQSMGKSAVVYAPY-VLCRSLDVWEDQPQFKLTGVK-IRALMAAT 676 Query: 735 YDDAEMDEP--------EWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAV 786 Y + E V + + + + K + YS + + +L Sbjct: 677 YSHRDDQGSMAAYKQELERVKDKLSRLARTGLSRSGKTLSETRAQTRYSEIEITDVLLIK 736 Query: 787 TRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSF 841 ++ + + L +S D ++ + + + LN V VP +F Sbjct: 737 SKIHDRNGTRLELPDGTSLVLSPDRRLRDKAYWRKAAARIQLNTVTVPEKLAPAF 791 >UniRef50_C2CN10 CRISPR-associated helicase Cas3 family protein protein (Fragment) n=1 Tax=Corynebacterium striatum ATCC 6940 RepID=C2CN10_CORST Length = 792 Score = 389 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 192/781 (24%), Positives = 303/781 (38%), Gaps = 79/781 (10%) Query: 135 FFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEW 194 + + V HHG + D D++R L Y + Sbjct: 2 LYDWLLKQGMWGPVAETIASVVESHHGIPARTVDYDRARA----ILREYPENWLLVQAAV 57 Query: 195 ISVLEALFL--TPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINA 252 I + G +++ L+ G ADW S ++F+ + + Sbjct: 58 IEAMADATEVKPIIGKIQSELFVPTIQLITGLVIAADWCASNERAFPYVFDCEQEQRVQD 117 Query: 253 -LRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPG--- 308 L + +AS+ + + Y + + PR +Q AL Sbjct: 118 GLASIGFAGLWNASKT-----MKPDVAEYFAAAFGWPDEWDPRPIQQRAFALARGSDGAS 172 Query: 309 LTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSP 368 L +IEA TGSGKTE ALA A ++ V+FA PT ATAN + R+ A ++ + Sbjct: 173 LHIIEASTGSGKTEAALAAAHAYAEKHGCHGVVFAAPTMATANGLFNRVIQWAQNVVPAG 232 Query: 369 NLI---LAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTID 425 + LAH + +Q ++ + ++ V +W + S KK L V T+D Sbjct: 233 DTTAAYLAHSMNSLVKEYQRLRVKGVSTDTSGNGSVTAMEWFA-SPKKGLLSNFAVSTVD 291 Query: 426 QVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSAT 485 QVL+ L +H +R LG+ V+I+DEVHAYD++ + LE+ LK A VILLSAT Sbjct: 292 QVLMMALQSRHNMLRHLGLAGKVVIIDEVHAYDSFTSAYLESTLKWLAWYEVPVILLSAT 351 Query: 486 LPMKQKQKLLDTYG---LHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQP 542 LP+ +K+ L+ Y D + YPL+ NG + L P ++ S+ Sbjct: 352 LPVDKKESLVQAYRSVLGEEDWESVSDGYPLLTIADANGVREESLDIGPNEIHADVSVIG 411 Query: 543 EPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHA 602 + L + + + G ++CN V AQ Y L + +++L HA Sbjct: 412 DTDRELLTLCEELLTD--------GGCALVVCNTVRRAQNSYSMLVKKFPD--EVELHHA 461 Query: 603 RFTLNDRREKENRVISNFGKNG----KRNVGRILVATQVVEQSLDVDFDWLITQHCPADL 658 F ++R KE +++ G R RI VATQVVEQSLD+D D +I+ P DL Sbjct: 462 AFIAHERAVKEGKMLQQLGPEARRGRSRPYRRIYVATQVVEQSLDIDVDVMISDMAPIDL 521 Query: 659 LFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGR-------HEHIYSNVRVMWRTQQ 711 L QR GRLHRH R ++ A + + EG+ IY ++ Sbjct: 522 LVQRAGRLHRHQRPLEDRPEKLRRARLFIRGAEGWDEMPVFDSGTAAIYDPAVLLASAAA 581 Query: 712 HIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWA 771 + P+ + Y D V + ++ A E R + + Sbjct: 582 VSRKWLSEGYRRPEDIAGIVRGTYAT-VADPESPVADWQPAWDEAREESRKLQNLAINRS 640 Query: 772 EEYSLQDND----------------------ETILAVTRDGEMSLPLLPYVQTSSGKQLL 809 E + D D E +A RD + ++ ++P G + Sbjct: 641 ETFRYPDPDVGNYRALFARYFESKGSAVDKEEAAIAQVRDADPTIEVIPIETGDFGYRPW 700 Query: 810 ---DGQVYEDLSHEQ-QYEALALNRVNVPFTWKR---SFSEVVDEDGLLWLEGKQNLDGW 862 V +D S E LA V +P + F V+D+ K+ GW Sbjct: 701 GTESEYVLDDESPEFSLARHLAGATVRLPTRMSKHESVFDRVIDQ------LEKETPVGW 754 Query: 863 V 863 V Sbjct: 755 V 755 >UniRef50_Q2RXK0 CRISPR-associated helicase, Cas3 family n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RXK0_RHORT Length = 885 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 205/838 (24%), Positives = 317/838 (37%), Gaps = 94/838 (11%) Query: 7 ICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLS-KQRVKA 65 WGKS + H L +HC DVAA + +++ R + A Sbjct: 28 YGAPWGKSR-----DGESHHLAHHCADVAACFEAMAA-LPGVRSRLERAAGGPLSEVDIA 81 Query: 66 WLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQD 125 L + LHDIGK FQ K+ L P + H G+ F Sbjct: 82 RLAVLVFLHDIGKLHPGFQAKAWPEGLWTGP--------------RHGHMREGVEIFQHQ 127 Query: 126 SLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAA 185 + + + + +V HHG + + W ++A Sbjct: 128 APPDIVRSLHLEKLIEWGVDWN----LLFSVLAHHGRPVSMEGGRPPCW---RAVAKAGY 180 Query: 186 QDKQAREEWISVLEALFLTPAGLSINDIPPD--CSSLLAGFCSLADWLGSWTTTNTFLFN 243 A E ++ F +P + L GF SLADWLGS F Sbjct: 181 DPGAASAEVGGLIPRWFAGAFVQDGRPLPSMVGFAHLFCGFVSLADWLGSTRAVFPFKAE 240 Query: 244 EDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCY----EGVHALLDNGYQPRQLQVL 299 D Y + ++ A + GL A L PR Q L Sbjct: 241 LDV--------DYMEKARKKAGAAVAAIGLDPRALQRKAAGRADFATLTGIDTPRPQQQL 292 Query: 300 VDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEA 359 V A P+A L ++EA TGSGKTE AL L DS+ FALPT+A A + R+ Sbjct: 293 VGAFPLAEPLVILEAETGSGKTEAALWRFVLLFAAGKVDSLYFALPTRAAAIQLHARVNK 352 Query: 360 SASHLFSS---PNLILAHGNSRFNHLFQSIKSR---AITEQGQEEAWVQCCQWLSQSNKK 413 + + +F + ++ G + + + G + +W ++S K+ Sbjct: 353 AMARVFGADAPEAVLAVPGYLKSGVVGGHALPDWGVRWDDDGGLDESRLLARWAAESAKR 412 Query: 414 VFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQA 473 I V T+DQ +++ L VKH +RG + RS+L++DEVHA D YM + +L Sbjct: 413 HLAATIAVGTVDQAMLAALQVKHAHLRGAALSRSLLVIDEVHASDRYMVEVQTHLLAMHL 472 Query: 474 DVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQ 533 GG +L+SATL + K L + + YP + +G P Sbjct: 473 GHGGQAMLMSATLGSLARTKWLGRKTSPSFEEAVATPYPAVWGKG---------EVAPRG 523 Query: 534 LPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNT 593 + + I L T I AA +GA+V ++ N V A + R+++ Sbjct: 524 GIGKGGEKSVAIGLVPSWTAETAAALAIDAARSGARVLVVRNTVRAAISTFDRVRQAGGE 583 Query: 594 QVDI------DLFHARFTLNDRREKENRVISNF--GKNGKRNVGRILVATQVVEQSLDVD 645 + + L H RF DR + V + + + GRI++ TQ +EQSLD+D Sbjct: 584 DLLLTVAKGPALHHGRFAPEDRALLDGAVEAALSVDQATRTPGGRIVIGTQTLEQSLDID 643 Query: 646 FDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPD---------------- 689 D+LIT CP D+L QR+GRLHRH RP+GFE+P +L+P+ Sbjct: 644 ADFLITDLCPVDVLLQRIGRLHRHA-LSRPSGFEVPHCRVLMPEQGLEIFLPPFFENGLG 702 Query: 690 -GEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDE------ 742 + G IY ++ V+ T++ I + P R ++S ++ Sbjct: 703 GWDERGVLNGIYRDLSVLELTRRLIAAYPEWRI--PAMNRFLVESATHPERIEALHRELG 760 Query: 743 ---PEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLL 797 + N K + R A + + D D+ TR G +L Sbjct: 761 RPWETYWANVCGKDIADAGAARNIALPIGTPFADMRYPDPDKEERIRTRLGAEGARIL 818 >UniRef50_Q0BRG2 Superfamily II DNA and RNA helicase n=1 Tax=Granulibacter bethesdensis CGDNIH1 RepID=Q0BRG2_GRABC Length = 857 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 172/831 (20%), Positives = 294/831 (35%), Gaps = 74/831 (8%) Query: 11 WGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFF 70 W K ++ + LI H DV + + + E + L Sbjct: 18 WAKFAEP----DCWLPLITHLGDVGDCFEALLNLPLYRARLATIIEKEPDRVTIQRLCAL 73 Query: 71 IALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQ 130 LHDIGK FQ K K H G + + E Sbjct: 74 AFLHDIGKLSSGFQGKILTKARK-------------------GHLLEGYHVLWRK---EA 111 Query: 131 SLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQA 190 L D + E+ A HHG + Q+ + + A + +A Sbjct: 112 GLQDALGLREDLSQWGEAMRSLFLAALAHHGRPIMVVGQEPVQADWAARTGYNPTEAARA 171 Query: 191 R-EEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSD 249 + + F L + AG +LAD +GS + Sbjct: 172 IGQACRTRYPDAFGPGPHLP---HHTELQHFFAGLVALADQIGSRECDFPLDRTIRTATK 228 Query: 250 INALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGL 309 + + L K G + R +Q + L + L Sbjct: 229 AADVLRNINMDVSRLRQAL--------KPVEPWQLFGWAEGTKLRPMQQALLELSLDIRL 280 Query: 310 TVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPN 369 +E+ TGSGKTE A +L + D + FA+PT+A A + R+ + F Sbjct: 281 AALESETGSGKTEAAFLRFLRLFRAGLVDGLYFAVPTRAAAAQLHRRINHAVQAAFGGEC 340 Query: 370 LILAHG--NSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQV 427 + G + + + R +EA Q W ++++++ + V T+DQV Sbjct: 341 FLALPGYMKAGTSEGWALPGYRVEWADNPDEAQKQAR-WAAETSRRFLAAPVAVGTVDQV 399 Query: 428 LISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLP 487 +++ L VK R + RS L++DEVHA D+YM+ +++ +++ GG +L+SATL Sbjct: 400 MLAGLQVKWSHFRSAALARSYLVIDEVHASDSYMSAVMDRIVQNHVAHGGHALLMSATLG 459 Query: 488 MKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICL 547 + LL + P + G +R H + Sbjct: 460 SATRASLLGARKKRKTDSHSPVHAPYPSLSWAEGEERRKQEIHLGIDLTEYQKAVSVNAA 519 Query: 548 ADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDL------FH 601 + + + AA GA+V +I N VD + ++ L+ + + H Sbjct: 520 PLIADPHAIAGMALEAARQGARVLVIRNTVDQVIATQRAIEALDAHAPTLSVNGIRCPHH 579 Query: 602 ARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQ 661 +RF DR ++ V GK+ GRI+ +Q VEQSLD+D D++IT CP D+L Q Sbjct: 580 SRFAAEDRLLLDHAVEQAMGKHS-VPGGRIVCGSQTVEQSLDIDADFMITDLCPIDVLLQ 638 Query: 662 RLGRLHRH-HRKYRPAGFEIPVATILLPDGEGY------------GRHEHIYSNVRVMWR 708 R+GRLHRH R RP F +L+P+ +Y+++ + Sbjct: 639 RIGRLHRHAGRHDRPDAFRNARCVVLIPEILSPEINLLRFGLGISRDGGGVYTDITGLES 698 Query: 709 TQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDE------PEWVGNGMDKFESAECEKRF 762 ++ I + ++ P R+ +++ D + P W + Sbjct: 699 VRRMINDGMVWTI--PQDNRRLVETGTDPQTLTALAQQLGPAWTQARNAVVGGRSAQGTI 756 Query: 763 KARKVLQWAEEYSLQDND---ETILAVTRDGEMSLPLL--PYVQTSSGKQL 808 ++ + +D VTR G LL P + G+++ Sbjct: 757 GRMNLVDCTRAFDGSIDDCFPNDTNIVTRLGADRTALLFAPDTRGPFGEKV 807 >UniRef50_Q60AC8 CRISPR-associated helicase Cas3 n=1 Tax=Methylococcus capsulatus RepID=Q60AC8_METCA Length = 881 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 205/877 (23%), Positives = 325/877 (37%), Gaps = 89/877 (10%) Query: 10 YWGKSSKSLTKGND-IHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRV-KAWL 67 +WGK D L H LDVA+V + + + + + L Sbjct: 9 FWGKIRLGQNGQTDQWLSLSQHSLDVASVFAALAE-LPAFHHKLKVSSGIELDGIQLQRL 67 Query: 68 LFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSL 127 LHD+GK ++ FQ K ++ A + A ++ + Sbjct: 68 AVIALLHDVGKANLGFQDKVFDAKAP--RAGHVRELAPLFDAPELCEAFATALDLDEIA- 124 Query: 128 SEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQD----KSRWEMPASLASY 183 P +S ++ A HHG + Q D A Sbjct: 125 -------------DWFDPPDSIEQFLLAAWSHHGAPVRFQTGDQTGNYYLARTRWWRADA 171 Query: 184 AAQDKQAREEWISVLEALFLTPAGLSINDIP--PDCSSLLAGFCSLADWLGSWTTTNTFL 241 QA E + + + F + IP AG LADWLGS Sbjct: 172 TRDPMQAVAELMRIAKQAFPDAFKRGVARIPGRARLQHRFAGLVMLADWLGSHQAFF--- 228 Query: 242 FNEDAPSDINALRTYFQDRQQDASRVLEL-SGLVSNKRCYEGVHALLDNGYQPRQLQVLV 300 P + ++ + A + L + + + G++PR LQ V Sbjct: 229 -----PLGRLLDIGFARNAARRALLTVGLDTASLQSDLAQRPTTFKHWFGFEPRPLQSAV 283 Query: 301 DALPVAP---GLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRM 357 D L + EA TGSGKTE ALA ++L D + FALPT+ A + R+ Sbjct: 284 DQQAPDDAESRLLIAEAETGSGKTEAALARFFRLFAAGKVDGLYFALPTRVAARELYLRV 343 Query: 358 EASASHLFSSPNLILAHGNS----------RFNHLFQSIKSRAITEQGQEEAWVQCCQWL 407 +F P A + + L + + I + Q QW Sbjct: 344 VNYLEQIFPKPECRPAAVLAVPRYARIDNVPIDKLDRLLPDDRILCHDDPDRLRQERQWA 403 Query: 408 SQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEA 467 ++ K+ + V T+DQ L+S + +H +R + + RS+L+VDEVHA D YM LL Sbjct: 404 AEHPKRFLAATVAVGTVDQALLSAVQTRHAHLRSVCLDRSLLVVDEVHASDVYMRRLLRG 463 Query: 468 VLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDL 527 +L +GG +LLSATL + L G T EN + + + Sbjct: 464 LLSHHVGLGGHAMLLSATLGAWACAEFLQACGCTTLAAENYAGACAAPYPALTLLSGIRR 523 Query: 528 LAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRL 587 + ++ +P + + ++ +++A AGA+V ++ N V A + L Sbjct: 524 SVGFARGGSVKRVRIDP--RSWLKQPERLISELVSALEAGARVLIVLNTVGRANALQRAL 581 Query: 588 KE--------LNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVE 639 ++ L Q I H RF +DR + V +GK G +L+ TQ +E Sbjct: 582 EQHPAIQKVWLFRCQDSICPHHGRFAPSDRELLDQAVSRRWGK-GTPPGPLVLIGTQTLE 640 Query: 640 QSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRH--- 696 QSLD+D DWLIT CPAD+L QR+GRLHRH RP GFE P T+L+PD Sbjct: 641 QSLDIDADWLITDLCPADVLLQRVGRLHRHA-CTRPPGFEAPRCTVLMPDCASLAEWLDA 699 Query: 697 -------------EHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDA---EM 740 +Y+++R + T+ + E + P R+ ++ + Sbjct: 700 RGEASREAKRAGFGSVYADLRTLELTRLMLLEQTEVEI--PRDNRRLVEGATHPERLATL 757 Query: 741 DEPEWVGNGMDKFESAECEKRFKARKVLQWAEEY-SLQDNDETILAVTRDGEMSLPLLPY 799 P W +G + Q+ + L N+ A TR G +L +P Sbjct: 758 SGPAWGKHGQNVEGLTLAHNIAAFHVAAQYDRPFGELSFNELNEKARTRLGLDTLR-IPL 816 Query: 800 VQTSSG-------KQLLDGQVYEDLSHEQQYEALALN 829 Q S G + + G + ++ E + Sbjct: 817 RQPSPGPFGAEIAEITIPGHLAPRERDDETAELIRRG 853 >UniRef50_C9M9R3 CRISPR-associated helicase Cas3, core n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M9R3_9BACT Length = 909 Score = 381 bits (977), Expect = e-104, Method: Composition-based stats. Identities = 212/929 (22%), Positives = 342/929 (36%), Gaps = 108/929 (11%) Query: 10 YWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQR-----VK 64 +W K K H L+ H DVAAV + Q + + R S + + Sbjct: 5 FWAKFDK--KDPTRWHSLLGHSADVAAVTERLL-QLPLWRRRLSRAASGSGWQSGIGALA 61 Query: 65 AWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQ 124 L + ALHD K +F+ K + + +H Sbjct: 62 DRLCAYAALHDFSKLSAQFRLKKEKDQH-------------GDFYKGVDH-ITTACDLVL 107 Query: 125 DSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYA 184 E + + + HHG +++ + W + A Sbjct: 108 RMDQEAAYRGKIPELVDWDCDDSVFLWIL---LSHHGRTPS-REKLRLHWPLLWPDARKD 163 Query: 185 AQDKQAREEWISVLEALFLTPAGLSINDIPPDCS-SLLAGFCSLADWLGSWTTTNTFLFN 243 A + A EE ++ F G AG LADW+GS + Sbjct: 164 APEWTALEELRQSVKRWFPKAWGTDERMPQAPLLGHFFAGVLMLADWIGSTEYFFPYEGC 223 Query: 244 EDAPSDIN--ALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVD 301 + T+ + + A R + L + L G+ P +LQ +D Sbjct: 224 DGRLPRGCGCDPITWSRSAARRALRQIGL----DRSEIFSHKEFLDQFGFLPNELQKAID 279 Query: 302 --ALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEA 359 L V GL IEAPTG GKTE AL +L D + D + FA P + A+ + R+ A Sbjct: 280 SLPLSVDGGLYSIEAPTGCGKTEAALRLFSRLFDAGLVDGLYFANPNRLAASQLYDRLWA 339 Query: 360 SASHLFSS--------PNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSN 411 F + P I+A G + +Q +E+ +W ++ Sbjct: 340 FDKKAFQAALPTVLAVPGYIMADGVKGRALDNLEVAWPDFEDQAKEKGACLGRRWAAERP 399 Query: 412 KKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKA 471 K+ + V TIDQ L+S + V+H +R I RS+L++DEVHA D+YM L ++L+ Sbjct: 400 KRFLTSPLAVGTIDQALLSTVRVRHCHLRAAAIQRSLLVIDEVHASDSYMTRLTSSLLEW 459 Query: 472 QADVGGSVILLSATLPMKQKQKLLDTYGLHTDPV-----------------ENNSAYPLI 514 ++GG V+L+SATL +++ +G + + + YPLI Sbjct: 460 FKNLGGHVLLMSATLTEALREQYFSQWGGLRQSIRFSKSLSEKKAEKKAEKKVPAGYPLI 519 Query: 515 NWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGA-QVCLI 573 + + QR D + S+ P + E +A + ++ Sbjct: 520 S--SLVDRQRSDTVVPLTAQDKNVSLTLWPCMTDINKTARRVAELWRSAPENEKPCILVL 577 Query: 574 CNLVDVAQVCYQRLKELNNTQVD------IDLFHARFTLNDRREKENRVISNFGKNGKRN 627 N V AQ Q L +L + + L H RF DR+ + V FGK+ ++ Sbjct: 578 RNTVAQAQKTAQELSKLLPEKALFQVQGVLTLHHGRFASPDRKVLDETVERYFGKDTEKG 637 Query: 628 VG--------RILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFE 679 +LVATQ VEQSLDVDFD+L+ CP D+L QR+GRL RHHR RPAGF Sbjct: 638 APAESDRRDGVVLVATQTVEQSLDVDFDYLVVDLCPGDVLLQRIGRLFRHHR-PRPAGFC 696 Query: 680 IPVATILLPDGEGYGRH-------------EHIYSNVRVMWRTQQHIEE--LNGASLFFP 724 P +L+P E + Y N+ ++ T + G P Sbjct: 697 EPQCVLLVPSDEPDAEWLCSSAAKKYGIGEKRAYENIASVYATWSRVRRDAQAGRPWLLP 756 Query: 725 DAYRQWLDSIYDDA----EMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEY--SLQD 778 R+ ++ + + P + + + S + + ++W++ + S + Sbjct: 757 SQNREIVEETVGEGLAKIIKENPRFEESEKSRQGSRLAVRGQASFAAVKWSKSFIDSKNE 816 Query: 779 NDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWK 838 + TR G L Y ++ E L R + K Sbjct: 817 VGKEPELGTRLGAKDLE---YDLPEQPISPFGLKLRSVTVPEWMGRYLDEPRNRLK---K 870 Query: 839 RSFSEVVDEDGLLWLEGKQNLDGWVWQGN 867 R+ +V +E G + + N + V G Sbjct: 871 RTEEKVSEEAGG---KERANKEIAVGAGL 896 >UniRef50_B6IWM7 CRISPR-associated helicase Cas3, putative n=1 Tax=Rhodospirillum centenum SW RepID=B6IWM7_RHOCS Length = 961 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 228/961 (23%), Positives = 346/961 (36%), Gaps = 117/961 (12%) Query: 1 MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSK 60 + + WGK+ L HLL++H LDVAAV D +++ L L + Sbjct: 7 VSVMADMFSRWGKARSGL------HLLVFHLLDVAAVLDAGFERRPALLARLADGLGLDR 60 Query: 61 QRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLY 120 +A LL +ALHDIGK FQ E+ + Q + +H A G Sbjct: 61 DAARAMLLTVLALHDIGKVATGFQASDREAAGA------LGLALAGQERMREHHSAVGQA 114 Query: 121 WFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASL 180 D TGHHG + + E A Sbjct: 115 ---LLLRLLTRHRAGSGLPDGGAAALPVMEALFALSTGHHGRPVLGLPKVSLLMETGALT 171 Query: 181 ASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTF 240 D + + LF G+ + S LL G +L DWLGS Sbjct: 172 D----DDMDIAATLVRAVAGLFGWRQGIPDREGLTRLSPLLNGLFTLCDWLGSSDHF--A 225 Query: 241 LFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQ------PR 294 N+ T ++ + R G AL + P Sbjct: 226 CRNQPQELRAYYEGTALPTARRMLDTIRPTPFGRLTPRPPAGFAALFPRLGRDGAPAVPT 285 Query: 295 QLQVLVD------ALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQA 348 LQ L D ALP P LT+IE G+GKTE +LI AD LPT A Sbjct: 286 PLQALADRLFTADALPDGPLLTIIEDLPGAGKTEAGDLITHRLIALDRADGAYVGLPTMA 345 Query: 349 TANAMLTR-------MEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWV 401 TA+A R ++ A+ P ++LAH + +RA G EE Sbjct: 346 TADAAFARRFDRDGGLDFGAALFTEVPQVVLAHSRRHRTPGYAVTPTRA----GLEEGEG 401 Query: 402 QCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYM 461 W ++S+++ L +GV T+DQ L L ++ +R G+ R VL+VDEVHAYD+YM Sbjct: 402 YALDWFNRSSRRALLTDLGVGTVDQALAGALRARYATVRLAGLWRKVLLVDEVHAYDSYM 461 Query: 462 NGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHT--------DPVENNSAYPL 513 LL A+L+ Q +G V+L+SATLP + +Q L+ Y AYPL Sbjct: 462 QTLLHALLRWQGRMGDPVVLMSATLPARLRQDLIRAYAEGAGWADVAAMAERTRPGAYPL 521 Query: 514 INWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLI 573 + G + L P P+ T+ +R+ G V Sbjct: 522 LTLVSGQGIAQHPLAPVPGPGT-------RPVRFEAAHDLDTVEDRLRGWLAQGRCVLWF 574 Query: 574 CNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNG--KRNVGRI 631 N V A ++RL +L+ L+HARF DR E ++ GK+ GR+ Sbjct: 575 RNTVGDAVAAWERLCDLDP-----LLYHARFLPADRSRIEAALLDAVGKDSCPAARRGRL 629 Query: 632 LVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGE 691 ++ATQ EQSLD+D D ++ PAD + QRL R P G P PDG Sbjct: 630 VIATQAAEQSLDLDADEMVIDLAPADAVVQRL--GRRRRHARMPDGAPAPDGVERRPDGP 687 Query: 692 G------------------YGRHEHIYSNVRVMWRTQQHIEE----------LNGASLFF 723 +G IY++ +W T + + + L +L Sbjct: 688 VLLLTPRPDRPGPAWYRSLFGGAAQIYADDARLWLTARCLLDPGAIPGRRPGLPPDALIL 747 Query: 724 PDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKAR---------KVLQWAEEY 774 D R ++++Y P+ + E A+ ++ + R +WA+ Sbjct: 748 ADDLRPLIEAVYAAEPAGVPDALAARHLAAEGADISRKQRGRVARLSFRQGLCEEWAQSG 807 Query: 775 SLQDNDETILAVTRDGEMSLPLL-------PYVQTSSGKQLLDGQVYEDLSHEQQYEALA 827 + E TR + LL P + + L + ++ E L Sbjct: 808 EQAEPTED-DPRTRLIDSHTVLLATYGDGPPRFLGAGDDRALSVVEASECRCPRRLEPLR 866 Query: 828 LNRVNVPFTWKRSFSEVVDED-GLLWLEGKQNLDGWVWQGNSIVITYTGDEGMTRVIPAN 886 V + G + + +W+G ++ ++ + G P + Sbjct: 867 GQEALVQQLLTGGLDDTDRRKAGRAPVIWLRPAGDGLWRGRALDLSDAEETGSR---PGS 923 Query: 887 P 887 P Sbjct: 924 P 924 >UniRef50_A8LM38 Cas3: CRISPR-associated helicase Cas3 n=1 Tax=Dinoroseobacter shibae DFL 12 RepID=A8LM38_DINSH Length = 857 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 198/810 (24%), Positives = 310/810 (38%), Gaps = 71/810 (8%) Query: 11 WGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFF 70 WGK+ + H L +H +DVAAV + V+ + K AWL F Sbjct: 18 WGKTDAAGRPS---HHLAHHSMDVAAVLEGLLRHPVISARAAAAAGIYLKPEAVAWLSAF 74 Query: 71 IALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQ 130 LHDIGK RFQ K P +H + GL W ++ + Sbjct: 75 AFLHDIGKLSPRFQAKV---------------WPDGIAGGTASHLSEGLIWADRLLDGQP 119 Query: 131 SLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQA 190 L A W A+ HHG + + Sbjct: 120 LLDGAAGPLVAPLVAGGMEKAWFGALLAHHGRPMAFDSFVYPPNPRDVFRDVPGYDWRAE 179 Query: 191 REEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDI 250 + L F A L AG +LADW+GS P Sbjct: 180 DRRMGAALRQWFPEIAIDLAVLRSHRLVHLFAGLLALADWIGSDDGAF--------PQRR 231 Query: 251 NALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQ-PRQLQVLVDALPVAPGL 309 + Y + A+ L GL + G+ PR +Q + +P+ L Sbjct: 232 DFDPDYGASARARAAAALVAIGLSNPAWPGTAPSFRDLTGHPVPRGVQQTIADIPLEARL 291 Query: 310 TVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPN 369 +IEA TGSGKTE ALA+ +L + D++ FA+PT+A A + R++ + + + Sbjct: 292 VIIEAETGSGKTEAALAHFARLRSEGRVDALYFAVPTRAAAGQLHRRIQEAMARIGGPEA 351 Query: 370 LILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLI 429 ++ G R + W ++ + + V TIDQ L+ Sbjct: 352 VLAVPGMLRAGLAEGRKLPGFRVLWDDD-----RVHWAAEHPTRFLAAPVAVGTIDQALL 406 Query: 430 SVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMK 489 + L VKH +R + RS+L++DEVHA D YMN + ++ +GG +L+SATL Sbjct: 407 AGLQVKHAPLRAAALSRSLLVIDEVHASDAYMNAVARPLVAGHTALGGHTLLMSATLGAG 466 Query: 490 QKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLAD 549 Q+ L + + YP I P+ + S+ P + D Sbjct: 467 QRAAWLGQPAP-SQRAASGLPYPAIWHDAAPADP-----LRPDPVGYAKSVHPRLVGTMD 520 Query: 550 MLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRL-KELNNTQVDID----LFHARF 604 +AAA GA+V ++ N V+ A ++ + + + + L HARF Sbjct: 521 AEAAAHKA---VAAAEKGARVLVLRNTVEAAVATWRAATRARADLCLSVLGQPALHHARF 577 Query: 605 TLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLG 664 DRR+ + V G+ G G +++ TQ +EQSLD+D D+LIT CP D+L QR+G Sbjct: 578 AAEDRRKLDAAVEQALGRAG-VTTGIVVLGTQTLEQSLDIDADFLITDLCPMDVLLQRIG 636 Query: 665 RLHRHHRKYRPAGFEIPVATILLPD------------------GEGYGRHEHIYSNVRVM 706 RLHRH + RPAGFE VA+I++P+ + G + IY ++R + Sbjct: 637 RLHRHADRTRPAGFEAAVASIMVPECGLAALADGPRFENGLGAWQTAGGYAGIYLDLRGL 696 Query: 707 WRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEM----DEPEWVGNGMDKFESAECEKRF 762 T++ I + + P+ R +++ + +W G + E R Sbjct: 697 ELTRRCIADRPVWQI--PEDNRTLVEAATHPDALASVEAALDWDEYGHRIDAKSLAEGRA 754 Query: 763 KARKVLQWAEEYSLQDNDETILAVTRDGEM 792 L + TR G Sbjct: 755 GGLLSLDRGAPFPTAFPGADEAVQTRLGAR 784 >UniRef50_C4ZJX7 CRISPR-associated helicase Cas3 n=2 Tax=Betaproteobacteria RepID=C4ZJX7_THASP Length = 876 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 192/819 (23%), Positives = 299/819 (36%), Gaps = 68/819 (8%) Query: 12 GKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFI 71 GK + H L+ H DVAAV + + ++ R A L Sbjct: 12 GKLDR-SEDAIKWHPLVDHLADVAAVFEALCACRAIRRSIEAVAGRSLDHRDFARLAALA 70 Query: 72 ALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWF--NQDSLSE 129 LHD+GK + FQ K LN + H A + + S Sbjct: 71 FLHDLGKANAGFQAKRW------------LNEERPRGRLTAGHSAEAIALLEASNHSDEA 118 Query: 130 QSLGDFFSFFDAAPHPY-ESWFPWVEAVTGHHGFIL-HSQDQDKSRWEMPASLASYA-AQ 186 ++L + E+ + A HHG + ++ D +R Q Sbjct: 119 EALLLHLPILEICGWGKPETLDNLLRASIAHHGRPIANAPDWFNARIHWSRQGEYDPAEQ 178 Query: 187 DKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDA 246 K + F+ + P + AG LADWLGS T F D Sbjct: 179 LKSIGAALQRFVPEAFVEGGLPLPD--TPRFAHYFAGLVQLADWLGSDTRFFPFTNVGDR 236 Query: 247 PSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLD--NGYQPRQLQVLVDALP 304 N+ ++ A R + L KR + D + P Q + Sbjct: 237 DRIGNS-----RELASTAVREIGLDPEPCRKRFEQASPDFGDVFDTTTPYPAQSAMSDPA 291 Query: 305 VAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHL 364 + + V+EA TGSGKTE AL L + D + FALPT+ A+ R+ + S Sbjct: 292 LGQ-VVVLEAETGSGKTEAALWRYLHLFARGAVDGLYFALPTRVAASQAYRRVREALSRA 350 Query: 365 FSSPN----LILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIG 420 + LA + +++ + +W +S+K+ + Sbjct: 351 WPEGAPLAVRALAGYAAADGETARALPDFKVLWSDDPSDAEAGRRWAGESSKRFLAAPVA 410 Query: 421 VCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVI 480 V T+DQ L+ L VKH +R RS+L++DEVHA D YM L+E ++ AQ +GG + Sbjct: 411 VGTVDQALLGTLQVKHAHLRHALTARSLLVIDEVHASDAYMAVLIEQLINAQIALGGHTL 470 Query: 481 LLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSI 540 LLSATL + + L + + L G+ D Sbjct: 471 LLSATLGAAARTRYLAAGNRKAQHLPS-----LAQASGLPYPAISDAWGIRSTSGAPREK 525 Query: 541 QPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKE-------LNNT 593 + C + + + AA GA+V +I N V A L+ L N Sbjct: 526 RVAWQCEDAIDDPQRVAALALEAAEQGARVLVIRNTVPAAVATLAALEAATPNVTWLFNR 585 Query: 594 QVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQH 653 I L H+RF+ DR + V + GK I+V TQ +EQSLD+D D+LIT Sbjct: 586 DGVITLHHSRFSREDRLMLDATVEAQLGKGRSSG-PLIVVGTQTLEQSLDLDADFLITDL 644 Query: 654 CPADLLFQRLGRLHRHHRK--YRPAGFEIPVATILLPDGEGYGR--------------HE 697 CP D+L QR+GRLHRH R RP F +L P+G Sbjct: 645 CPMDVLLQRIGRLHRHMRPVEARPNAFREARVLVLTPEGGDLTPCLTRPRHGLGRFHDGG 704 Query: 698 HIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMD-----EPEWVGNGMDK 752 +Y++ R++ T++ I + + + P R+ ++S + + W +G Sbjct: 705 GVYADTRILEATRKLI--HSESQVRIPADNRRLVESATHPEALHAIESLDTAWATHGQQI 762 Query: 753 FESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGE 791 + +L + + + TR G Sbjct: 763 DGDTGARRTSAKLGLLPLDTAFVELGFPDEVKLATRLGA 801 >UniRef50_B3PKI9 CRISPR-associated helicase Cas3 domain protein n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PKI9_CELJU Length = 817 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 135/889 (15%), Positives = 262/889 (29%), Gaps = 131/889 (14%) Query: 15 SKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALH 74 + K +I L H +V+ +A + + + + + LH Sbjct: 4 AHKRKKDGEIQELSAHLSEVSNLAATFAKK-------------IDAESAGRLIGL---LH 47 Query: 75 DIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGD 134 D GK+ FQ + ++NP + M K +H AG Q Sbjct: 48 DFGKYSQEFQLYIKSATGEINPDEDDYV-DAKGMKGKVDHSTAGAQLVWQRLKR------ 100 Query: 135 FFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKS-----RWEMPASLASYAAQDKQ 189 F + + HH ++ D R P + Sbjct: 101 ----FGNSGQGELCGQILALCIASHHSGLIDCIGVDDKPVFSNRMSKPDEKVHLDECQRT 156 Query: 190 AREEWISVLEAL---------------FLTPAGLSINDIPP--DCSSLLAGFCSLADWLG 232 A +E + L+ L F+ S D + L AD L Sbjct: 157 ADKEILEKLDQLASVDQVKKLFNQLRRFVDFTNPSTIDFFNLGFFTRFLFSCLIDADRLN 216 Query: 233 SWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQ 292 S + E + DR ++ L + V + Sbjct: 217 SAEFEDPIRLKERLERSGSINWKVAIDRLENHLSRLSVRNYVDE--------------LR 262 Query: 293 PRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANA 352 + + GL + PTG GKT +L YA + +I+ +P + Sbjct: 263 REISNNCKNNAYKSQGLYTLTVPTGGGKTYASLRYALHHARHHGLERIIYIIPYTSIIEQ 322 Query: 353 MLTRMEASAS-HLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSN 411 + + P ++ H N + W S+ Sbjct: 323 NAKVIREIVEHKSDTRPWVLEHHSN----------------------LEPEQQTWQSKLV 360 Query: 412 KKVFLGQIGVCTIDQVLISVLPVKHRFIRGLG-IGRSVLIVDEVHAYDTYMNGLLEAVLK 470 + + I + T+ Q+L ++ + +R L + SVL+ DE+ + V+ Sbjct: 361 SENWDAPIVLTTMVQLLETLFSGGTKGVRRLHQLANSVLVFDEIQTLPINCVHIFCNVMN 420 Query: 471 AQAD-VGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLA 529 + +L +AT P+ + K + L + ++ + Sbjct: 421 FLVQGCNTTAVLCTATQPLLNELKCPEKGQLIVSEGNELAGDFNRHFVDL---------- 470 Query: 530 HPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKE 589 R I + P+++ L + +I N AQ Y R E Sbjct: 471 ------RRVDIYNQIKPGGWSAPEISALA--LEQFQKHGSCLVIVNTKAWAQELYLRCAE 522 Query: 590 LNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWL 649 N +I R+ ++ K K + ++TQ++E +DVDF + Sbjct: 523 CVNDS-EIFHLSTNQCPRHRKI----LLYLIKKRLKHRKPVLCLSTQLIEAGVDVDFSSV 577 Query: 650 ITQHCPADLLFQRLGRLHRHHR-KYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWR 708 I D + Q GR +R+ K ++ PD E G + I + Sbjct: 578 IRFLAGLDSIAQAAGRCNRNGTLKDEHGNLIKGQVFVINPDRESTGMLKDIDVGKD---K 634 Query: 709 TQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWV---GNGMDKFESAECEKRFKAR 765 ++ + E + P A +Q+ + D D + + D + + Sbjct: 635 AERVLSE-EYEDMLSPAAIKQYFRYYFFDRADDMSYLLVGKQHRNDSLLNLLSSRIGCNE 693 Query: 766 KVLQWAEEYS-LQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLD-----GQVYEDLSH 819 + + L+ + + + G+ L++ + + + Sbjct: 694 NFSNRENKVTLLRQAFMEAGRQFKAIDAPTQAVIVQYGKKGRNLVNELCSVAKEFNARRY 753 Query: 820 EQQYEALALNRVNV-PFTW-----KRSFSEVVDEDGLLWLEGKQNLDGW 862 Q VNV P W + + E+ E G+ +L+ + + + Sbjct: 754 YQLLRQAQKYSVNVFPNIWDKLIKENAVHEIQAEHGIYYLDEEYYNESF 802 >UniRef50_UPI0001AF1D47 CRISPR-associated helicase Cas3 n=1 Tax=Streptomyces ghanaensis ATCC 14672 RepID=UPI0001AF1D47 Length = 782 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 155/777 (19%), Positives = 279/777 (35%), Gaps = 76/777 (9%) Query: 36 AVADCWWDQSVVLQNTFCRNEMLSK-QRVKAWLLFFIALHDIGKFDIRFQYKSAESWL-- 92 VA+ D V + W+ +HD+GK FQ + Sbjct: 1 MVAEGLVDVLVGPHCRAELDRAFGPLGDAVGWVSVLCGVHDLGKLSPTFQGLREDIAAPA 60 Query: 93 ----KLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYES 148 +HG + + ++ + Sbjct: 61 MGPVAAGYIRRLTRWRGPGARTDCHHGLLTAVHMARILKAWGTVPA-------------T 107 Query: 149 WFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAG- 207 A+ GHHG I + ++R + ++ + + AL+ P Sbjct: 108 ARTIAWALGGHHGVIPSAASVRQAREAVG---DHGGPWWAGVCDDLVRRVVALWGLPEPE 164 Query: 208 ---LSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDA 264 + P+ LAG S++DW+ S ++ L Y + + D Sbjct: 165 GLAWGEVRLSPEAVVALAGLTSVSDWIASARPEKDYV------GTGVELAGYLRQARWDE 218 Query: 265 SRVLELSGLVSNKRCYE-GVHALLDNGYQPRQLQVLVDALP---VAPGLTVIEAPTGSGK 320 +R +E + E G AL +P +Q V+ + G+ V+ APTG GK Sbjct: 219 ARKIERLAWRGWRPPRETGFRALFPLEGRPHPVQEAVETVVGRMRGSGIVVVAAPTGEGK 278 Query: 321 TETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSS-PNLILAHGNSRF 379 T+ AL A L+ + A+P++ T+N +E + L P + L H + Sbjct: 279 TKAALQAAATLVRRFGLRGFYVAMPSRVTSNQAFDAVEQLLAGLGEKAPPVRLLHSAAGD 338 Query: 380 NHLFQSIKSRAIT--------EQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISV 431 + + GQ++ + +W + K+ L +GV T+DQ L++ Sbjct: 339 YLKDRRAPADGAEGLRPVGVDVDGQDDGDGEAAEWFAH--KRGLLAPLGVGTVDQALMAA 396 Query: 432 LPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQK 491 L H F+R G+ V++ DEVH YD +M+ L++ +L + V+LLSATLP +++ Sbjct: 397 LRSSHVFVRLAGLSGKVVVFDEVHGYDVHMSTLMDRLLWWLGRLRVPVVLLSATLPARRQ 456 Query: 492 QKLLDTYGLHT-------DPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEP 544 L++++ AYP + W + L +++ Sbjct: 457 HALVESWRAGAAGRIPLEVEAPAAQAYPRVAWADTESDAVETVGVEASLLNSDRTVELVR 516 Query: 545 ICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKEL-----NNTQVDIDL 599 + + A+AG V ++ NLV A ++++ + + ++ L Sbjct: 517 VGF------EARAAWAVEQASAGRCVAVVHNLVRHAVEAHEQILQRVERLPVEERPEVFL 570 Query: 600 FHARFTLNDRREKENRVISNFGKNGK-----RNVGRILVATQVVEQSLDVDFDWLITQHC 654 HA+ +R E + + FG+ R I+V TQ++E+ LD DFD +++ Sbjct: 571 LHAKLLQAERARVEAEIRAKFGRPDDREEDLRPRRAIVVGTQLLEEGLDADFDVMVSSVA 630 Query: 655 PADLLFQRLGRLHRHHRKY-RPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHI 713 P D L QR+GR+ RH R RP P + R+ ++ RT + Sbjct: 631 PIDSLIQRMGRIQRHDRGGSRPPLLLALTGVEEEPGKIAFPRYTTNVYAEAILLRTWALL 690 Query: 714 EELNGASLFFPDAYRQWLDSIYDDAEM--DEPEWVGNGMDKFESAECEKRFKARKVL 768 + + P + +D +Y E+ W E K R Sbjct: 691 RGRD--RVCCPQEVQHLVDLVYGPDELLACPEGWEKQWARAAEQLGRSIARKERGAE 745 >UniRef50_B4UE67 CRISPR-associated helicase Cas3 n=3 Tax=Bacteria RepID=B4UE67_ANASK Length = 888 Score = 368 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 200/811 (24%), Positives = 317/811 (39%), Gaps = 82/811 (10%) Query: 11 WGKSSKSL-TKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRV--KAWL 67 WGK ++ + H L+ HC DVAA + V+++ R L +A L Sbjct: 9 WGKLRRTPGSPVERWHPLVAHCADVAACLEALLAD-AVIRSRLARLAGLRDLEAPQRARL 67 Query: 68 LFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSL 127 ALHD GKF+ FQ K A + G ++ G Sbjct: 68 CILAALHDAGKFNHGFQRK-------GALAPADVAGHVGELF--------GALAVPSPER 112 Query: 128 SEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKS--RWEMPASLASYAA 185 + DA + A HHG + ++ + A+ Sbjct: 113 AALVAALGLREIDAWG-----ASRLLVAALAHHGAPENVRNPSRPPRAALWRATEDRDPI 167 Query: 186 QDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNED 245 A + PA + P +G +LADW+GS + + + Sbjct: 168 AGIAALATTARSWYPAWREPAEPFPDR--PPFQHAFSGLVTLADWIGSDEAAFPYAADPE 225 Query: 246 APSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLD--NGYQPRQLQVLVDAL 303 A + ++R Q R L + + + A D + +PR Q V L Sbjct: 226 ADRMP-----FARERAQQVLRRLWVDPSAARAALRGVMPAFTDLFDVERPRPAQQAVLDL 280 Query: 304 P--VAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASA 361 GL+++EA TGSGKTE A+A +L + D + FALPT+ +A + R+ + Sbjct: 281 AVAPEGGLSILEAETGSGKTEAAVARFVRLFAEGRVDGMYFALPTRTSATQIHRRLVDAM 340 Query: 362 SHLFSSPN-----LILAHGNSRFNHLFQSIKSR----AITEQGQEEAWVQCCQWLSQSNK 412 F ++ G R + L R A+ E+ ++ W + K Sbjct: 341 RRCFPDERERPPVVLAVPGYLRVDDLVGGRDPRLPPFAVCWPDDEQERMRWRGWAVEHGK 400 Query: 413 KVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQ 472 + G + V TIDQ+L+S LP+KH +R + R L+VDEVHA D YMN LLE VL+ Sbjct: 401 RYLAGTVVVGTIDQILLSALPLKHAHLRAAALLRHFLVVDEVHASDAYMNRLLETVLERH 460 Query: 473 ADVGGSVILLSATLPMKQKQKLLDTYGLHTDP---VENNSAYPLINWRGVNGAQRFDLLA 529 GG +L+SATL +++ + + + P YP I+ RG Sbjct: 461 LAAGGHALLMSATLGAAARERFVRSSADGSLPPLAACEEMRYPGISCRGAGTELADREPR 520 Query: 530 HPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKE 589 + EP+ + D + + + AA AG +V +I N V A + L+ Sbjct: 521 PAGGPADSKPLAIEPVPILDEASAIAGMA--LDAARAGGRVLVIRNTVKGALAVQRDLEA 578 Query: 590 LNNTQVDIDL---------FHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQ 640 ++ L H+R+ DR + + + GK GR++VATQ V+Q Sbjct: 579 RAGSRDRALLFECEGQAAPHHSRYAAPDRERLDRAIEAALGKRAGAG-GRVVVATQTVQQ 637 Query: 641 SLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRH---- 696 SLD+D D L+T CPAD+L QR GRLHRH + RPAGFE +L+P G++ Sbjct: 638 SLDLDADLLLTDLCPADVLLQRAGRLHRHAVRKRPAGFERARVALLVPCDPDLGKYITAR 697 Query: 697 ---------EHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDE----- 742 +Y ++R++ T + E + P R ++++ + Sbjct: 698 GDARGPQGIGTVYRDLRILQATWSFVGEHAEIEI--PANNRAFVEAATHPEALGRVVARG 755 Query: 743 -PEWVGNGMDKFESAECEKRFKARKVLQWAE 772 W + + E+ V W Sbjct: 756 GERWTLHARAVTGALLGEQVLATTNVFDWNR 786 >UniRef50_B0TDT7 Crispr-associated helicase cas3 n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TDT7_HELMI Length = 754 Score = 368 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 201/777 (25%), Positives = 325/777 (41%), Gaps = 88/777 (11%) Query: 155 AVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIP 214 A+ GHHG + + AS KQ R + + L F D P Sbjct: 4 ALQGHHGSFVVP------CKRVDDGSASINELWKQLRLQVVEELLRFFQMDI-WKQQDFP 56 Query: 215 --PDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSG 272 LL+G LADW+ S F D P A + F+ + LSG Sbjct: 57 DHSTFGMLLSGITVLADWIASSEA----FFGGDIPDWHQAKQKNFEVLALQFLDQVGLSG 112 Query: 273 LVS-----NKRCYEGVHALLDNGYQPRQLQVLVDALPVA---PGLTVIEAPTGSGKTETA 324 + + R LQ L + + + GL +IEAP G GK+E Sbjct: 113 KKPINAEMTEEDSFLRFWRHLHLPSLRPLQALCEQIARSEKTGGLAIIEAPMGEGKSEAG 172 Query: 325 LAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQ 384 + + D + ALPT ATAN M +R++ S+ + L L HG + L + Sbjct: 173 IYLLNCWVAGSGGDGMYVALPTAATANQMYSRVQELLSNQGTEKGLRLVHGMAWLLDLQK 232 Query: 385 SIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGI 444 E + K+ L GV T+DQ +++ + VK +R LG+ Sbjct: 233 QYWEEDERED------------WFRPKKRALLAPYGVGTVDQAMLAAMRVKFGCLRLLGL 280 Query: 445 GRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDP 504 L++DEVHAYDTYMN +++ +L + V+LLSATLP+K++++LL+ YG Sbjct: 281 AGKGLLIDEVHAYDTYMNTIIDQLLAWCGHLSIPVVLLSATLPVKRRKQLLEAYGGDVIE 340 Query: 505 VENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAA 564 N YPL+ F +L P + ++++ P L ++ ++ A Sbjct: 341 GAVNQQYPLVTVAVDAKTCEFPVL--PSRPNQEYNLRMLPGALE---NAEAIVNAVLDWA 395 Query: 565 NAG--AQVCLICNLVDVAQVCYQRLKE-----LNNTQVDIDLFHARFTLNDRREKENRVI 617 +A ++ N V +AQ +++LK+ + V++ L+HARFT R+ E++V+ Sbjct: 396 DAHDSGCAGVVVNTVYMAQQVFRKLKKLHRKGRLPSDVELLLYHARFTAGRRKAIEDKVL 455 Query: 618 SNFGKNG-----KRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRK 672 K +R +LVATQVVEQSLD+DFD L T+ P DLL QR+GRL RH R Sbjct: 456 RWLDKGSLQDPARRPKRAVLVATQVVEQSLDIDFDVLFTELAPIDLLLQRIGRLWRHERP 515 Query: 673 YRPAGFEI-PVATILLPDGEG---YGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYR 728 R E +I P+ +G+ +Y + V+ +T +++ N L P +R Sbjct: 516 RRLNHAESKANVSIFAPEIAERFYWGKTGAVYEPL-VLLKTLAVLQKRNQFQL--PQDFR 572 Query: 729 QWLDSIYDDAEMDEPEW----VGNGMDKFESAECEKRFKARK---------------VLQ 769 ++S+YDD + P+ + + +++ + E++ +AR+ + Sbjct: 573 PLIESVYDDEIANVPDEWLYSLASVREEYRKNQVEQQQRARESLYPKPLKSELAVTPIFA 632 Query: 770 WAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALN 829 EE S + + AVTR G + +L + +V + L +Q Sbjct: 633 VNEEVSEGEVSSHLHAVTRIGSETRSVLAVPKDE------WERVGQGLVSHEQLHHWMKY 686 Query: 830 RVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGW-VWQ-----GNSIVITYTGDEGMT 880 V++P W + W + W+ GN I I Y + G Sbjct: 687 HVSLPEKWLSGCELPALKPYRQWSVMPMHPGSPSFWEGTSKGGNVIRIEYDDELGFR 743 >UniRef50_A6VNU7 CRISPR-associated helicase Cas3 n=1 Tax=Actinobacillus succinogenes 130Z RepID=A6VNU7_ACTSZ Length = 811 Score = 366 bits (938), Expect = 3e-99, Method: Composition-based stats. Identities = 139/895 (15%), Positives = 249/895 (27%), Gaps = 134/895 (14%) Query: 15 SKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALH 74 + + H L+ A +A + F LS+ L +H Sbjct: 7 AHIREVDKQRQSVQVHLLETAVIA-----------SMFAVKLDLSE--AGELLGL---MH 50 Query: 75 DIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGD 134 D GK+ FQ + A P +K +H AG W + Sbjct: 51 DFGKYSTAFQEYIRAVTGQDPDADNDYVLP---NGKKIDHSTAGAQWVYR---------R 98 Query: 135 FFSFFDAAPHPYESWFPWVEAVTGHHG-FILHSQ------------DQDKSRWEMPASLA 181 F + HHG ++ D++ + Sbjct: 99 LKKFGLQNGIGELVGQILGLCIASHHGEGLIDCLNMNGEAVWQKRFDKEDELTHLSECEQ 158 Query: 182 SYAAQDKQAREEW---------ISVLEALFLTPA--GLSINDIPPDCSSLLAGFCSLADW 230 K EE + +L A+F P + L AD Sbjct: 159 RADKAVKIRAEELAGENLVKSLLKLLAAIFKNPDSNDKIKEFYLGCLTRFLFSCLIDADR 218 Query: 231 LGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNG 290 + S F E +Q L + + Sbjct: 219 INSAD----FEREEQKDLRRLNQSPDWQQAIDKLETHLANFEIR-----------YPIDE 263 Query: 291 YQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATA 350 + + G+ + PTG GKT +L YA + D +I+ +P + Sbjct: 264 IRREISSTCLKRANDPQGIYTLTVPTGGGKTLASLRYALHHAHKHNLDRIIYIIPYTSII 323 Query: 351 NAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQS 410 + ++ + ++ H N + W + Sbjct: 324 DQN----ASAVREILGEDWVLEHHSN----------------------LEPEQQNWQDKL 357 Query: 411 NKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLG-IGRSVLIVDEVHAYDTYMNGLLEAVL 469 + + I T+ Q L + R +R + + +SVLI DE+ L VL Sbjct: 358 LSENWDKPIVFTTMVQFLDAWFGGGTRGVRHIHPMTKSVLIFDEIQTLPVKCVHLFCNVL 417 Query: 470 KAQADVG-GSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLL 528 G S +L +AT P L + EN+ I + Q FD L Sbjct: 418 NWLTQFGKSSAVLCTATQP--LLDNLPKSEFGELKLAENSE----IMGQNKTLNQLFDDL 471 Query: 529 AHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLK 588 + R I +P + ++ + I N AQ YQ + Sbjct: 472 S-------RVEIHYKPKAGGWSADEAG--AFLLEQFQTASSCLFIVNTKKWAQELYQYCQ 522 Query: 589 ELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDW 648 + + R+ + + K I ++TQ++E +D+ Sbjct: 523 RQDVPPEALFHLSTNQCSVHRKAIFDEIKGRL----KNKQPVICISTQLIEAGVDISMSC 578 Query: 649 LITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWR 708 +I D + Q GR +RH K V + L + I Sbjct: 579 VIRALGGLDSIAQAAGRCNRHGEKVGKGQ----VYVLNLQEPNLARVLPDIDQGQ---QN 631 Query: 709 TQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVG-NGMDKFESAECEKRFKARKV 767 ++ + E + P A RQ+ + + + D V + + R Sbjct: 632 AERVLREFAEQDILQPAAMRQYFEYYFYNRSNDMSYTVKGSTSGSLLDWLSDNRLNVYAA 691 Query: 768 LQWAEEYSLQDNDETILAVTR-----DGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQ 822 L ++ + R D ++PY + L G V+ + Sbjct: 692 KNDKRRPKLPLLMQSFKSAGRAFQAIDAPTRAVIVPYSKGKDLIAELCG-VWNPKEMYRI 750 Query: 823 YEALALNRVNV-PFTWKR-----SFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVI 871 + VNV P W++ + EV G+ +L+ + D + + + Sbjct: 751 LSKVQRYSVNVFPNVWEKLEKEQAVQEVQAGLGIYYLKERYYSDEYGLSVDEVGA 805 >UniRef50_B6WQ58 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WQ58_9DELT Length = 654 Score = 363 bits (930), Expect = 2e-98, Method: Composition-based stats. Identities = 180/659 (27%), Positives = 270/659 (40%), Gaps = 63/659 (9%) Query: 217 CSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSN 276 +AG +LADWLGS F D D ++LR Q A + +E GL Sbjct: 1 MLWCVAGLVTLADWLGSDE----HFFPPDTLLDEDSLR-------QRAGKAVETIGLGLP 49 Query: 277 KRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQI 336 A + +G P LQ A PG+ VIEAP G GKTE AL A+ L+ + Sbjct: 50 PVVQGLDFAKIFSGRAPYPLQAEAAAAIDRPGIHVIEAPMGMGKTEAALWAAYHLLSRGQ 109 Query: 337 ADSVIFALPTQATANAMLTRMEASASHLFSSP-NLILAHGNSRFNHLFQSIKSRAITEQG 395 AD + FALPTQAT+N M R + L HGNS +++ A Sbjct: 110 ADGIFFALPTQATSNRMFLRFADFVRRVCPQAVPAQLIHGNSWLQDELKALVCPATPGIE 169 Query: 396 QEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVH 455 + W ++ GV T+DQ L++VL VKH +R + V+++DEVH Sbjct: 170 ADPCWFNTT-------RRSLFAPFGVGTVDQALLAVLAVKHFALRRFALAGKVVVIDEVH 222 Query: 456 AYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLIN 515 YD Y L+ + + +G +VI+LSATL + + LL + YP I+ Sbjct: 223 TYDMYTGTLVRYLCRELEQLGCTVIILSATLTEEARCSLLSLPAGEEG---RDIPYPRIS 279 Query: 516 WRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICN 575 R + PE+ PP P+ + L + + A GAQ+ +CN Sbjct: 280 GRAASD-------VLPERCPPSL---PDKVVHVMHPGRGEALAQAVELAGQGAQILWVCN 329 Query: 576 LVDVAQVCYQRLKELN---NTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRIL 632 V AQ + L++ + D+ L H+RF R E ++ G G+R G IL Sbjct: 330 TVARAQEDFMELRQRAATRDGGPDVGLLHSRFPFYRREFLEREWMARLGPEGERTKGSIL 389 Query: 633 VATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEG 692 V+TQ+VEQS+D+D D L ++ P D+L QRLGRL RH R RP + E Sbjct: 390 VSTQIVEQSVDLDADVLFSELAPTDMLLQRLGRLWRHPRDGRPVEAPLFCLLREGVPCEE 449 Query: 693 YG-----------RHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMD 741 + R + + V+ RT + E L L P R + + Y + ++ Sbjct: 450 FRHLEAAAIMASLREKAFVYSPYVLLRTLELWEPL--EKLTLPSGIRGLMAATYTEKDV- 506 Query: 742 EPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDG-EMSLPLLPYV 800 W + + ++R W D+ + TR + +L +L Sbjct: 507 PSGWEALYAEDYGRDLADRRLADMGTDIWQVAL-----DDAVALKTRLSADDALMVLARA 561 Query: 801 QTSSGKQLLDGQVYEDLSHEQQ----YEALALNRVNVPFTWKRSFSEVVDEDGLLWLEG 855 + + LL+G S + L N V +P + +DG L Sbjct: 562 REGNRIVLLEGGEAAMPSDGRISLAAARRLHRNTVRIPASCLTGKP----QDGQLAPYH 616 >UniRef50_C4X9J1 CRISPR-associated Cas3 family helicase n=7 Tax=Bacteria RepID=C4X9J1_KLEPN Length = 871 Score = 362 bits (928), Expect = 4e-98, Method: Composition-based stats. Identities = 191/788 (24%), Positives = 289/788 (36%), Gaps = 96/788 (12%) Query: 30 HCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYKSAE 89 HC V +A R + A HDIGK F K Sbjct: 44 HCQIVGEIARALIALYPEPMR--SRLFPAGSEMA-------AAGHDIGKVSPTFAAKIFA 94 Query: 90 SWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESW 149 + +H AGL N E G A + Sbjct: 95 ACDVN------------------DHRLAGLSAVNPGL--ETLWGGHAGVSQATAESLHAP 134 Query: 150 FPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLS 209 E + HHGF + R++ + L+A F A Sbjct: 135 RYVPEILGQHHGFNP------GLNGRRGDAEVFGGPLWFDERKKLVDKLKAEFS--ADWP 186 Query: 210 INDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLE 269 D + ++AG S+ADW+GS +Q A Sbjct: 187 TFD-SAAQARVVAGLTSVADWIGSGEFFEN-------------PEQAWQPVITAALNNAG 232 Query: 270 LS-GLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYA 328 ++ + V D +PR+ Q V PGL ++EA G GKTE AL A Sbjct: 233 FIKPVIRQGLSFADVFFPDDPPKKPREAQSRFIDQVVGPGLYILEAQMGMGKTEAALYAA 292 Query: 329 WKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPN---LILAHGNSRFNHLFQS 385 ++++ Q+ A + FALPTQ T+N + R A + S+ +L H + Sbjct: 293 YQMLVQEKATGIYFALPTQLTSNKIYDRFNAFLHQIVSTETPQHALLLHSGAWL------ 346 Query: 386 IKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIG 445 + E W + K+ L V TIDQ L++V+ VKH F+R G+ Sbjct: 347 ------MDTEMGEEGSPGGAWFN-HRKRGLLAPFAVGTIDQALMAVMNVKHGFVRAYGLA 399 Query: 446 RSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPV 505 V+I+DEVH YD Y +L A+++ + +VI+LSATL ++ LL Sbjct: 400 GKVVILDEVHTYDLYTGTILNALVEFLRQIDCTVIILSATLSQTRRDALLQQ-------S 452 Query: 506 ENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAAN 565 + AYPLI +R + + + L D + E + A Sbjct: 453 TTSEAYPLITAAPSAERERGLVEIGVPVT------ENTTVILHSCRKDESAREEALRRAE 506 Query: 566 AGAQVCLICNLVDVAQVCYQRLKELN-NTQVDIDLFHARFTLNDRREKENRVISNFGKNG 624 G QV I N + AQ Y L + L H+RFT R E R ++ +G+ G Sbjct: 507 LGQQVLWIENTIAEAQQTYLDLASRAVEAGCETGLLHSRFTPQHRNRHEQRWVALYGRAG 566 Query: 625 ---KRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIP 681 ++ GRILV TQV+EQSLD+D D+L+++ P D+L QRLGRL RH R A + Sbjct: 567 WPQRKQCGRILVGTQVLEQSLDIDADFLVSRFAPTDMLLQRLGRLWRHTDTPRHASAKAE 626 Query: 682 VATI-------LLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSI 734 + L G +G +YS V+ R+ + + + SL P R +D Sbjct: 627 CWLLSPSLESALANPGSAFGMSAMVYSPY-VLCRSLEVWQAIP--SLSLPGDIRPLIDQT 683 Query: 735 YDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSL 794 Y + + W + + +A + L + A TR + Sbjct: 684 YTERAEEGT-WATLLHELKNGSRFRSGEQALQSLAKLTLSTGGKTLPEHKAETRYSDRDT 742 Query: 795 PLLPYVQT 802 L ++ Sbjct: 743 HDLLLLRG 750 >UniRef50_B4SAU8 CRISPR-associated helicase Cas3 n=1 Tax=Pelodictyon phaeoclathratiforme BU-1 RepID=B4SAU8_PELPB Length = 739 Score = 360 bits (924), Expect = 1e-97, Method: Composition-based stats. Identities = 129/885 (14%), Positives = 250/885 (28%), Gaps = 170/885 (19%) Query: 5 KYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVK 64 + Y+ S + + HLL H VA +A F R + Sbjct: 15 ENFWRYYAHS-RPSEPSENWHLLEDHLQAVAEMA-----------AGFARFFG-----AE 57 Query: 65 AWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQ 124 W HD+GK + +Q + + +G H G + Sbjct: 58 NWADIAGRWHDLGKGTLSWQAYLRHENNVTDEFSAFYSGHPV-------HAIVGAQELYK 110 Query: 125 DSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYA 184 S L + GHHG + + D + + Sbjct: 111 QSDQAGKL-------------------LAYCIAGHHGGLPNWHDDAIAALKSRLMEDFTD 151 Query: 185 AQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNE 244 + + S+L + I +L AD+L Sbjct: 152 VDFPHSAPKLPSLLP--LSKIEQNRLGFIIQFFVRMLFSCLVDADYL------------- 196 Query: 245 DAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALP 304 D + ++ ++ ++ + E + + + N Y+ + L + + Sbjct: 197 DTEASLSNKKSVWRSGYPALDELSERFSTNFDALRNKADSTTVVNQYREKVLNDCLKSAE 256 Query: 305 VAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHL 364 PGL + PTG GKT +LA+A + +I+ +P + Sbjct: 257 FDPGLFSLTVPTGGGKTLASLAFALAHAKKYGKRRIIYVIPFTSIIEQNAQVFRDML--- 313 Query: 365 FSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTI 424 ++ H N + W S + + I V T Sbjct: 314 -GDDAILEHHCNFMVDE----------------------SDWKSLLASENWDAPIIVTTN 350 Query: 425 DQVLISVLPVKHRFIR-GLGIGRSVLIVDEVHAYDT-YMNGLLEAVLKAQADVGGSVILL 482 Q S K + R + S++I DEV A ++ +E + + + G S IL Sbjct: 351 VQFFNSFYASKTSYCRKLHNVADSIVIFDEVQAIPVEKLSPCMEVIKELSLNYGVSSILC 410 Query: 483 SATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQP 542 +AT P + + + + + +R + E Sbjct: 411 TATQPAIEYSEQFQSGLQGVREIIQDV------HSLFGALKRTEESFIGE---------- 454 Query: 543 EPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHA 602 + + D+ L+ E QV I N A Y L + + T A Sbjct: 455 --LSVQDVATKLSNYE----------QVLCIVNTRQQALDIYNALPKSDGT----IHLSA 498 Query: 603 RFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQR 662 R K N + +V+TQ++E +DVDF + D + Q Sbjct: 499 LMYPLHRTNKLNEIRRRL----HDGEPCRVVSTQLIEAGVDVDFPCVFRVVAGIDSIAQA 554 Query: 663 LGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLF 722 GR +R+ + + + I ++ + + +L L Sbjct: 555 AGRCNRNGLHEKA-------CQVFVFSFADLPITPFIKQAA----QSAEKLFDLFKGKLT 603 Query: 723 FPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDET 782 P+ R++ YD ++ G+ + +K+ + N T Sbjct: 604 SPECVREYF---YDYFWKNQQRMDSEGIVSLCQTAQSGEIQFKKLADFE-----IINSAT 655 Query: 783 ILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFS 842 I + + SL ++ ++ + L V + + Sbjct: 656 IPVIIALDQNSLTMV-------------EELKYSKYKGRILRKLQKYTVQIHSNQIKEIQ 702 Query: 843 EVVDED--GLLWLEGKQNLDGWVWQGNSIVITYTGDEGMTRVIPA 885 + ++ G+ L + Y+ + G+ P Sbjct: 703 KSLEVIVPGIFVLIS--------------DVLYSSNTGLKCSTPQ 733 >UniRef50_C5BP95 CRISPR-associated helicase Cas3 domain protein n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BP95_TERTT Length = 818 Score = 357 bits (916), Expect = 9e-97, Method: Composition-based stats. Identities = 132/897 (14%), Positives = 258/897 (28%), Gaps = 134/897 (14%) Query: 22 NDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDI 81 + LL H +V L +F L++ L LHD GK+ Sbjct: 11 GERQLLQTHLSEVGE-----------LAASFAEKVGLAE--AGRLLGL---LHDFGKYSN 54 Query: 82 RFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDA 141 FQ + L+ P M K +H AG + + L + A Sbjct: 55 SFQAYIKSANADLDRDDADFVDP-VAMKGKIDHSTAGTQFIWKLLLER---------YPA 104 Query: 142 APHPYESWFPWVEAVTGHHGFILHSQDQ-----DKSRWEMPASLASYAAQDKQAREEWI- 195 + + + HHG +++ DQ R L Y + E + Sbjct: 105 VGNVHCVAQILAICIASHHGGLINFLDQSGDNRFNIRLAKADDLTHYTECLENCGEVFRE 164 Query: 196 ----SVLEALFLTPAGLSINDIPPDCS------------SLLAGFCSLADWLGSWTTTNT 239 V + + + P D L AD + S N Sbjct: 165 GIQSQVNNEFLRSFIVVLKSMYPADAKQTIAFFYLGFCTRFLFSCLVDADRINSIEFDNP 224 Query: 240 FLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVL 299 +R + L+ N + + Sbjct: 225 KAKALRLKRKKQFSWDTAIERLEAYLSTLDT--------------NKSINRLRAQISLDC 270 Query: 300 VDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEA 359 ++ GL + PTG GKT +L +A + D VI+ +P + Sbjct: 271 LNKAASPTGLFKLSVPTGGGKTLASLRFALQHAKLNKLDRVIYIIPYTSIIEQNAHVARE 330 Query: 360 SASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQI 419 H + +L H ++ L W S+ + + + Sbjct: 331 VLEHAGDEFSWVLEHHSNLEPEL---------------------QTWESKLLSQNWDAPV 369 Query: 420 GVCTIDQVLISVLPVKHRFIRGLG-IGRSVLIVDEVHAYDTYMNGLLEAVLKAQAD-VGG 477 T+ Q L ++ R R + + RSVLI DE+ L + Sbjct: 370 VFTTMVQFLEALFGGGTRGARRIHQLARSVLIFDEIQTLPVRCMHLFCNAINFLTQSANT 429 Query: 478 SVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPR 537 + ++ +AT P+ + + L P + +N DL P Sbjct: 430 TAVMCTATQPLLDRLSKPELGQLEFSSGAELVEDPTALFASLNRVSVEDLCKQP------ 483 Query: 538 FSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDI 597 + ++E ++ +I N A+ ++R E +I Sbjct: 484 ------------GWTESEIVELVLDTYKKNKTCLVIVNTKAWAKRLFERCGEFLPAD-NI 530 Query: 598 DLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPAD 657 R + V + + ++TQ++E +D+ F ++ D Sbjct: 531 YHLSTNLCAAHREDIFKEVRMRL----EAKRPTLCISTQLIEAGVDISFASVVRFLAGLD 586 Query: 658 LLFQRLGRLHRHHRKYRPAG-FEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEEL 716 + Q GR +R+ +G + I+ P+ E G I T++ + E Sbjct: 587 SIAQAAGRCNRNRELEDESGNAALGHVYIVSPEDENLGSLVDIQLGQA---ATRRVLGE- 642 Query: 717 NGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSL 776 ++L P+A ++ + D + D + + +E R + A + Sbjct: 643 GFSNLLSPEAIERYFFYYFSDRKDDMAYQLQE--KSLDKSENIVRLLSTNHANMAYKQPP 700 Query: 777 QDNDETILAVTRDG--------EMSLPLL-PYVQTSSGKQLLDG--QVYEDLSHEQQYEA 825 + + D ++ ++ PY + L G + E + Sbjct: 701 AKHLPQLQQSFADAAKHFKAIDAPTVGIITPYGEGQEIINELCGLDRYTERDRMRELLAR 760 Query: 826 LALNRVNVPFTW------KRSFSEVVDEDGLLWLEGKQNLDGW--VWQGNSIVITYT 874 +N+ + E + +L+ + L+ +G ++ + Sbjct: 761 AQKFSINIYENLFNELRSLEAILEAQHGLEIYYLKQEYYLNESGLSVEGGALPFLFD 817 >UniRef50_Q8REC9 ATP-dependent RNA helicase n=4 Tax=Fusobacterium RepID=Q8REC9_FUSNN Length = 812 Score = 357 bits (915), Expect = 1e-96, Method: Composition-based stats. Identities = 133/846 (15%), Positives = 293/846 (34%), Gaps = 108/846 (12%) Query: 58 LSKQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAA 117 L+ + L + I HD GKF+++FQ + E+ ++N + + H Sbjct: 38 LNDKEKIELLSYAIDYHDSGKFNLKFQRRIEENIKRINGEKYNSKYLKFDKENEIEHNIL 97 Query: 118 GLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMP 177 + N + + + + +V HH + + + Sbjct: 98 SAFLINSQDFN----------------SEKEYLAVLYSVIFHHRYSDAISTINNQIF--- 138 Query: 178 ASLASYAAQDKQAREEWIS--VLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWT 235 ++ E+ + V+ P L+ D+ + L G D S Sbjct: 139 -------PNIEEILEDNLPNGVVTYEGDIPLELNFQDLNTVENIKLLGLLMKCDHSASGG 191 Query: 236 TTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQ 295 + + + N L + + D Sbjct: 192 YEIEYPNDFLEEALNNLLNEFKEK----------------------------DKSADWND 223 Query: 296 LQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLT 355 +Q + + A TG GKTE + + + F LP + NAM Sbjct: 224 MQKFCKE--NSDKNIIAIADTGMGKTEGGFLW-------GGNNKIFFVLPLRTAINAMYK 274 Query: 356 RMEASA-SHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKV 414 R++ + + L H NS +L + + ++E + ++ + K Sbjct: 275 RVKLFVPKNKILEEKVGLLHSNSLEYYLNNK---KELVIDDKDEKEMDILEYNKRG--KH 329 Query: 415 FLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQAD 474 + +CT DQ+ +L K + + S +I+DE+ YD + + + + Sbjct: 330 LSLPVTICTPDQIFNFILKYKGYESKLATLSYSKIILDEMQMYDASLLAAVIFGITKIIE 389 Query: 475 VGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQL 534 +GG + +++AT P + L + P + + ++ Sbjct: 390 MGGKIAIVTATFPPIIEYFLNKYLMKGNKKAIKDLDKP--------EEVVEEPIFIKKKF 441 Query: 535 PPRFSIQPEPICLADMLPDLTMLERMIAAANAGA---QVCLICNLVDVAQVCYQRLKELN 591 I+ + + D + +L + ++ +ICN + AQ Y +LKE + Sbjct: 442 TNNEKIRHNIVLIDDEIGVEQILWKFRKNRKENKKSNKILVICNTIKKAQEIYLKLKEED 501 Query: 592 NTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLIT 651 + + I++ H+ F DR KE ++ FGK G I ++T +VE SLD+DFD+L T Sbjct: 502 DLKDKINMLHSNFIREDRENKEKEILD-FGKTEFDGEG-IWISTSLVEASLDIDFDYLFT 559 Query: 652 QHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGR---HEHIYSNVRVMWR 708 + + LFQR GR +R +K + I L + Y + ++ + + + Sbjct: 560 ELQDLNSLFQRFGRCNRKGKK----LVDEANCFIYLKIEDKYLKEKGSKYGFIDKDIYEN 615 Query: 709 TQQHIEELNG----ASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKA 764 +++ +E + Y + + +++E + + + ++ Sbjct: 616 SKKGLENYYEVVSKDEIENSQDYSELFKNY--SKQINEGDKIKLIEENLSFENLKESNFV 673 Query: 765 RKVLQWAEEY-SLQDNDETILAVTRDGE-MSLPLLPYVQTSSGKQLLDGQVYE-DLSHEQ 821 + + E+Y + ++DE + + S+ ++PY ++ + + + + + Sbjct: 674 DEFEKAYEKYQRILNSDENSQDALKLRDIQSVTVIPYDIYEENEENIKELIKKIEDKNLG 733 Query: 822 QYEALALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNS-------IVITYT 874 E + T + ++ + L+GK + + + + + + Y Sbjct: 734 LEERQNAKTELLKKTLSIQYYQLSKYISEI-LKGKADANKYKSESINKFEKITVMEADYD 792 Query: 875 GDEGMT 880 + G Sbjct: 793 KELGFR 798 >UniRef50_A7VC53 Putative uncharacterized protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VC53_9CLOT Length = 789 Score = 354 bits (909), Expect = 6e-96, Method: Composition-based stats. Identities = 147/812 (18%), Positives = 272/812 (33%), Gaps = 151/812 (18%) Query: 27 LIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYK 86 L H D+ A +++ +M ++ K +L +HD+GK + FQ Sbjct: 61 LREHEKDIVNCAGKFFEIF----------DMYFTEKEKNLVLEACRVHDLGKANYIFQTI 110 Query: 87 SAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPY 146 ++ R+ HG ++ + ++ Sbjct: 111 VNPQLTRM-------------AERQIPHGFLSALSLSEKQVKQEIPEC----------TG 147 Query: 147 ESWFPWVEAVTGHHGFILHSQDQD----KSRWEMPASLASYAAQD-KQAREEWISVLEAL 201 + + + AV HH D+D +W +D K + +L + Sbjct: 148 DDFSVLLTAVYYHHDRKDSFSDKDFYDYYDKWYKKYLQEYLGKEDVKFSAANRNQLLYSN 207 Query: 202 FLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQ 261 T S+++ L+ G + DW S Sbjct: 208 NPTMKLRSVDEQTWCEYMLIKGLLNKFDWTVSAGYEE----------------------- 244 Query: 262 QDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKT 321 EL ++ K+ + N + +LQV + V+ APTGSGKT Sbjct: 245 ------AELHSDIAEKKLCSTIRDYFSNSLR--ELQVFMQEHSDDN--VVVIAPTGSGKT 294 Query: 322 ETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNH 381 E AL +A + + LP + ++NA+ +R++ + ++ L H +S ++ Sbjct: 295 EAALLWA-------NGEKGFYTLPLKVSSNAIYSRIKDRYMY----KDVALLHSDSLSSY 343 Query: 382 LFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRG 441 K+F + VCT+DQ+ V I Sbjct: 344 F-------------DGTDGQFTDGNTRYEQAKLFSYPLTVCTVDQLFKFVYKAPGTEIFA 390 Query: 442 LGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLH 501 + S LI+DE+ +Y + L L + G +++AT P + + Y L Sbjct: 391 ATLKYSKLIIDEIQSYSPKIVAALIYGLSELKQMEGKFAIITATFPPVL-EFFMRKYRLI 449 Query: 502 TDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMI 561 D Y I++ G R + E+ +R+ Sbjct: 450 KD-----RDYIFIDFSATMGTDRHKIALFHEEFD---------------------FDRIA 483 Query: 562 AAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFG 621 +V +ICN V AQ Y+ L + + ++ L H+R+ R + E ++ Sbjct: 484 EDGYK-KKVLVICNTVSKAQKVYEELSQRTD---EVFLLHSRYIRKHRDQLEKMIMDF-- 537 Query: 622 KNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIP 681 + + I V TQ+VE SLD+DFD L T+ C AD L QR+GR +R +K Sbjct: 538 -SSNDEMTGIWVTTQIVEASLDIDFDVLYTEMCTADSLLQRMGRCNRAGKKD----ITDA 592 Query: 682 VATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMD 741 I + + IY + + R+ Q +E NG LF Q+++ +YD + Sbjct: 593 NVLIYVNYSGCMKNGKGIY-DSDIYDRSVQLLEAYNG-KLFSEKDKVQYMNEVYDVDALK 650 Query: 742 EPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQ 801 + + + E++ S+ ++P Sbjct: 651 NTAYFQMIKRNLAKFKSLQPLDYTSKKDIDEDFRGI--------------KSITVIPDRI 696 Query: 802 TSSGKQLLDG--QVYEDLSHEQQYEALALNRV 831 + L++ V + + + ++ Sbjct: 697 YQENQYLIEAITSVLDTPYVDSNIRRILKAKL 728 >UniRef50_C1TRB8 CRISPR-associated HD domain protein n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TRB8_9BACT Length = 859 Score = 353 bits (905), Expect = 2e-95, Method: Composition-based stats. Identities = 124/910 (13%), Positives = 253/910 (27%), Gaps = 157/910 (17%) Query: 15 SKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALH 74 + L+ H +V L +F L + LH Sbjct: 14 AHVRGGDGWEQPLMDHLRNVG-----------RLSESFAGKIGLGD--AGKMIGL---LH 57 Query: 75 DIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGD 134 D+GK+ FQ S K+NP + P ++ K +H AG + + G Sbjct: 58 DLGKYSSSFQNYLLSSSGKINPDSEEYMDPFSKKG-KIDHSTAGAKFIWEKLRGVGKCGQ 116 Query: 135 FFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKS-----RWEMPASLASYAAQDKQ 189 + HH ++ +D R + P Y+ Sbjct: 117 G----------EVCAQIMALCIASHHSGMIDCLSKDDKLVFWDRMDKPDEGTRYSECLSA 166 Query: 190 AREEWISVLEA-------------LFLTPAGLSINDIPPDC-------------SSLLAG 223 + ++L F + + L Sbjct: 167 MENDLKTLLNESLDDSKVNSMVNSFFSYLNKTARFSTGEKYGFSTIGAFNLGMTARFLLS 226 Query: 224 FCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGV 283 AD + S F + +Q RVL+ Sbjct: 227 CLVDADRIDSAE----FEDPSRKKERLRRRDFDWQTGIDRLERVLD-----------SYK 271 Query: 284 HALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFA 343 N + R + G+ + PTG GKT +L YA + +I+ Sbjct: 272 QDSQVNEIRRRISDECLKRADDPQGIYTLSVPTGGGKTLLSLRYAMRHALHHDLHRIIYV 331 Query: 344 LPTQATANAMLTRMEASASHLFSS-PNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQ 402 +P + + + + P ++ H N + Sbjct: 332 VPFTSIIEQNAQEVRSILEGEGDAFPWVLEHHSNIE----------------------PE 369 Query: 403 CCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLG-IGRSVLIVDEVHAYDTYM 461 W + + + + T+ Q L ++ + +R + + +S+L+ DE+ + Sbjct: 370 RQTWSYKLAAENWDCPVVFTTMVQFLETLFRGGNSRVRRMHMLAKSILVFDEIQSLPIKC 429 Query: 462 NGLLEAVLKAQADV-GGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVN 520 L L + G + +L +AT P + L G L ++ Sbjct: 430 THLFCNALNFLVEQAGSTAVLCTATQPTLDRLSSLGNPG-------------LAEKGELH 476 Query: 521 GAQRFDLLAHPEQLPPR-FSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDV 579 A+ +L++ L + + + + + ++ N Sbjct: 477 MAENSELVSDKTSLFDDLRRVSIRNLSRPGGWSKEEIGDLALKRLEDFGNCLVVVNTKTW 536 Query: 580 AQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVE 639 A+ ++ +V R +S K + ++TQ++E Sbjct: 537 AKRLFEYCSSETEAEVT-FHLSTGQCPAHR----KECLSVIRKRLIEGKRVLCISTQLIE 591 Query: 640 QSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFE-IPVATILLPDGEGYGRHEH 698 +DVDF +I D + Q GR +RH G + +I+ P E + Sbjct: 592 AGVDVDFGAVIRFIAGLDSIAQAAGRCNRHGELRDFEGVPMMGDVSIVNPSEEKISTLKD 651 Query: 699 IYSNVRVMWRTQQHIEELNGA--------------SLFFPDAYRQWLDSIYDDAEMDEPE 744 I +T++ + E L P ++ D + + + Sbjct: 652 ILIGQ---EKTKRILSEYKEEHKHELKTCEATDYSGLLDPITLYRYFDYFFFERTDEMGY 708 Query: 745 WVGNGMDKFESAECEKRFKAR--------KVLQWAEEYSLQDNDETILAVTRDGE-MSLP 795 + ++ R + L + + + R + + Sbjct: 709 NFSGKGGRDDNLLNLLSLNDRSGLAEFNVNRKNTGKAPLLLQSFKYAGEIFRAIDAPTNS 768 Query: 796 LLPYVQTSSGKQLLDG----QVYEDLSHEQ-QYEALALNRVNV-PFTWKR-----SFSEV 844 ++ G++L+ + + VNV P WKR + E+ Sbjct: 769 VICP--YGEGEKLISKLCSLSIGFEFEEYGALLRRAQQYSVNVFPNVWKRLCNAGAVHEI 826 Query: 845 VDEDGLLWLE 854 + +G+ +L+ Sbjct: 827 QEGEGVFYLD 836 >UniRef50_B1Y4J1 DEAD/DEAH box helicase domain protein n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y4J1_LEPCP Length = 794 Score = 351 bits (901), Expect = 5e-95, Method: Composition-based stats. Identities = 144/848 (16%), Positives = 243/848 (28%), Gaps = 128/848 (15%) Query: 7 ICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAW 66 + +W S + +KG+ HLL H VA A +F + Sbjct: 1 MSEFWAHSPSTASKGSG-HLLHDHLQSVAERA----------CKSFMQQPGSD------- 42 Query: 67 LLFFIAL-HDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQD 125 L + L HD+GK+ FQ A + +H AAG W + Sbjct: 43 LAYLAGLWHDLGKYRPGFQRYIR-------MAADAHIEGKLPQGSDKSHSAAGALWALEH 95 Query: 126 SLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAA 185 + + + GHH + + D K R + + + Sbjct: 96 LSKQHGAEGCVA-----------ARILQYVIAGHHAGLDNWDDGLKPRLAGADTHREFTS 144 Query: 186 -----QDKQAREEWISVLEALFLTPAGLSINDIPPDCS---SLLAGFCSLADWLGSWTTT 237 + I L +IP + +L AD+L + Sbjct: 145 ALDAQPPEAVLRPPIDRPAVKTLPLPFKGPEEIPGRFALWVRMLFSALVDADFLDTEAFM 204 Query: 238 NTFLFNEDAPSDIN--ALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQ 295 N + AL F + + L +GL L N + Sbjct: 205 NPTTAQAREAETLPMCALLACFDTYMELKAETLVAAGL----------ANTLVNRRRAEV 254 Query: 296 LQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLT 355 L APG + PTG GKT LA+A V+ +P + Sbjct: 255 LAACRTKAAEAPGTFTLTVPTGGGKTLAGLAFALTHAVHHGKRRVVMVIPYTSIIEQTAQ 314 Query: 356 RMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVF 415 + L ++ H N+ + ++ +SR E + Sbjct: 315 VYREVFAPL-GDEVVLEHHSNAESDERDETSRSRLACEN--------------------W 353 Query: 416 LGQIGVCTIDQVLISVLPVKHRFIR-GLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQ-A 473 + V T Q+ S+ K R + SVL++DE + VL+ Sbjct: 354 DAPVIVTTSVQLFESLFARKTSRCRKLHNLAHSVLVIDEAQLLPVQYLQPVVDVLRLLVR 413 Query: 474 DVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQ 533 D G +V+L +AT PM +Q+ GL ++ Sbjct: 414 DHGVTVVLCTATQPMLTEQRHFGGRGLR------------------GYQSGEVRAIIDDE 455 Query: 534 LPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNT 593 ++Q + L L + A V I + A+ Y RLK T Sbjct: 456 AGLYKALQRVRVHLPSDLTTPQPWDATAQALQQHDAVLTIVSRRADARDLYDRLKRELPT 515 Query: 594 QVD-IDLFHARFTLNDRREKENRVISNFGKN------GKRNVGRILVATQVVEQSLDVDF 646 + A R E + + G +V+TQ+VE +D+DF Sbjct: 516 GARGLHHLSALMCAQHRSEVIADIKAALVIRREALACGDAAEPVRVVSTQLVEAGVDLDF 575 Query: 647 DWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVM 706 + D + Q GR +R R V + P G ++ Sbjct: 576 PVVYRALAGLDSIAQAAGRCNREGRLAMGE-----VHVFVPPKAPPAGLMRQAAQTCALV 630 Query: 707 WRTQQHIEELNGASLFFPDAYRQWLDSIYDDAE-MDEPEWVGNGMDKFESAECEKRFKAR 765 W +++ D ++ +Y +A +D + ++ + R Sbjct: 631 W------DDIGDTDPLALDRVSRYFAHLYGNANTLDIGDVCDALRLTVDTQAWTLPVRFR 684 Query: 766 KVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEA 825 AE + L DN+E + R + L + D Sbjct: 685 DA---AENFRLIDNEEAATVIVRYRSP--------RCRDNVDQLIAMLERDGPQRWLMRK 733 Query: 826 LALNRVNV 833 L V + Sbjct: 734 LQRYGVTI 741 >UniRef50_A1VHS3 Metal dependent phosphohydrolase n=3 Tax=Desulfovibrio vulgaris RepID=A1VHS3_DESVV Length = 745 Score = 351 bits (901), Expect = 6e-95, Method: Composition-based stats. Identities = 137/781 (17%), Positives = 232/781 (29%), Gaps = 140/781 (17%) Query: 8 CHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWL 67 Y+ S+ + K D L H +VA L TF + W Sbjct: 19 ARYYAHSTPNPDKS-DWQGLDAHLENVAN-----------LAATFAEAFGAHE-----WG 61 Query: 68 LFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSL 127 LHD GK +F + ++ NH G Sbjct: 62 KAAGLLHDAGKATAQFTQRLEGRPVR------------------VNHSLCGAR------- 96 Query: 128 SEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQD 187 A + A+ GHHG + + + A Sbjct: 97 ------------HAQKQGGKCGLLLSYAIAGHHGGLPDG-GLQEGQLHHRLKHERLPADV 143 Query: 188 KQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAP 247 + + T + + +L + AD+L T F E A Sbjct: 144 SPPSVDIRPDVLKPPFTKLPENQVFSLSFFTRMLFSCLTDADFL----DTEAFCTPERAS 199 Query: 248 SDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAP 307 + T + + L+ + N + L P Sbjct: 200 ARNGRPATGLVALRDALNTHLDTVERDAAPS--------RVNDIRKTVLHDCRARASETP 251 Query: 308 GLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSS 367 GL + PTG GKT +++A+A VI+A+P + S +F Sbjct: 252 GLFSLTVPTGGGKTLSSMAFALDHAVTHGLRRVIYAIPFTSIIEQN----AKVFSDVFGQ 307 Query: 368 PNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQV 427 N++ H N + ++E Q + + + V T Q Sbjct: 308 DNVLEHHCN----------------YRSKDEPEEQGYDKWRGLAAENWDAPVVVTTNVQF 351 Query: 428 LISVLPVKHRFIRGLG-IGRSVLIVDEVHAYDTYMN-GLLEAVLKAQADVGGSVILLSAT 485 S+ + R L I RSV+++DE A T L A+ + G +V+L +AT Sbjct: 352 FESLFSNRPSRCRKLHNIARSVIVLDEAQAIPTEYLEPCLYALKELVGQYGCTVVLCTAT 411 Query: 486 LPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPI 545 P L + LH +++A P++L + Sbjct: 412 QPAVDDASLPERVRLH---------------------HVREIIADPQRLYTDLK--RTEV 448 Query: 546 CLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFT 605 LA L D + R+ + QV I AQ + L+E Sbjct: 449 TLAGRLTDAALAARL----DGHGQVLCIVGTKPQAQAVFSLLQEREGA----FHLSTNMY 500 Query: 606 LNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGR 665 RR + + +V+T ++E +DVDF + D + Q GR Sbjct: 501 PEHRRRVLGTIRQRLA----DRLPCRVVSTSLIEAGVDVDFPVVYRAMAGLDSIAQAAGR 556 Query: 666 LHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPD 725 +R R P + P+ + + R R Q+ + L A + Sbjct: 557 CNREGRLPEPG-----QVVVYEPE-----KPPRMPWMQRCASRAQETLRTLPEADPLGLE 606 Query: 726 AYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILA 785 A R++ IYD E+D + + + K + A ++ D++ T L Sbjct: 607 AIRRYFGLIYDVQELDRKDIFKRLRGQVDKDMVFK------FREIANDFRFIDDEGTALV 660 Query: 786 V 786 + Sbjct: 661 I 661 >UniRef50_C1DUL9 Crispr-associated helicase Cas3 n=3 Tax=Hydrogenothermaceae RepID=C1DUL9_SULAA Length = 755 Score = 351 bits (899), Expect = 9e-95, Method: Composition-based stats. Identities = 142/894 (15%), Positives = 290/894 (32%), Gaps = 156/894 (17%) Query: 7 ICHYWGKSSKSLTKGNDIHL--LIYHCLDVAAVADCWWDQSVVLQNTFCRNEM--LSKQR 62 + ++ K + L H + ++ ++ + + + + Sbjct: 1 MEEFYAK---LYFQDGKAFPETLREHT-------ENLLEELERIKKIYGKELESIGANED 50 Query: 63 VKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWF 122 L HD+GK FQ K S+ + H + Sbjct: 51 FWNALKIACLFHDLGKISSHFQRKIKRYIG-------EDVKISSGTKEEIPHNYLSGIFL 103 Query: 123 NQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLAS 182 S++ +FF + + +V HH E+ S+ Sbjct: 104 FNSSIANVLNNEFFDY-------------VLYSVLFHH------------NREISFSVDY 138 Query: 183 YAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLF 242 + K+ + + +L L LS + D + S+ + Sbjct: 139 MDSVFKRDLKPKLCLLSWLSKFNIDLSNINEESPYFVY--------DEIKSYMNNSDKKI 190 Query: 243 NEDAPSDINALRTYFQDRQQDASRV---LELSGLVSNKRCYEGVHALLDNGYQPRQLQVL 299 ++ + I L R ++ +E + + + + DN + Q Sbjct: 191 SQIKKNKIFILFKGLLHRLDHSASAHLPVEENRIHNVDEKLISYLSKKDNFKGLKPFQEK 250 Query: 300 VDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEA 359 L ++ A TG GKTE A+ + D + LP + + NAM R + Sbjct: 251 AKEL--RNKNVLLTASTGIGKTEFAVNWI-------GEDKAFYTLPVRVSVNAMYDRFVS 301 Query: 360 SASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQI 419 + L H ++ F + + + +E + + F I Sbjct: 302 IFES--DKEKIGLLHSDALFYGMESN--------ETIDEFLSLEEHIIRTQTSRQFSMPI 351 Query: 420 GVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSV 479 + T DQ+ SVL + S +++DE +Y ++ L+ A GG Sbjct: 352 TITTADQLFTSVLKYPGYEKIYATLMYSKVVLDEPQSYSPDTLAIIIKGLQEIAYYGGKF 411 Query: 480 ILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFS 539 +SAT+ + L D E+L P F+ Sbjct: 412 CFMSATIHPFINEYLKDFV---------------------------------EELDPVFN 438 Query: 540 IQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDL 599 + + + + + +I+ N G +V +I N V AQ Y+ LKE+ +++ L Sbjct: 439 SEKKHKIKLENRTIDELSKEIISQFNQGKKVLVITNTVKKAQELYKILKEI--ENLNVKL 496 Query: 600 FHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLL 659 H+ F DR EKE ++ S I ++TQ+VE SLD+D+D + + D L Sbjct: 497 LHSLFIQIDRNEKEKQIKS-------PTEPVIWISTQLVEASLDIDYDIMFAEISTLDSL 549 Query: 660 FQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGA 719 QR+GR++R + + I + G+ N ++ T + +EE N Sbjct: 550 IQRMGRVYRKQGRI-INESDNANIVIATKEPSDKGK----IYNNEIISFTLEALEEFNN- 603 Query: 720 SLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDN 779 + + + + +Y+ ++ + N + E + D Sbjct: 604 KILSDEEKQNLMKKVYEIEKIKNTSFYKNFIKNMELLNAGFKT---------------DT 648 Query: 780 DETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEA-----LALNRVNVP 834 + R +++ ++P ++ + L ++Y LN+ V Sbjct: 649 KGEAQQLFRGI-LNINVIPEEVYQENLDEIEKAIEIALDKSKKYSEKIQAFYTLNKFTVS 707 Query: 835 FTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMTRVIPANPK 888 + + + + + D + + ++ Y + G+ I +P+ Sbjct: 708 MPFYKLKNIIPTQI---------TPDKFRNKIFTVNFEYDSEFGL--DISKDPE 750 >UniRef50_UPI0001AEDDCA helicase n=1 Tax=Streptomyces albus J1074 RepID=UPI0001AEDDCA Length = 910 Score = 351 bits (899), Expect = 1e-94, Method: Composition-based stats. Identities = 157/811 (19%), Positives = 285/811 (35%), Gaps = 62/811 (7%) Query: 9 HYWGKSS---KSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNT--FCRNEMLSKQRV 63 WGK + K G+ H L+ H LD AAVA+ WD+ + ++ ++ Sbjct: 6 RIWGKGAGLGKDAHGGDHAHPLVCHLLDTAAVAEVVWDELLTEHQRNIVAAALHVTNEQA 65 Query: 64 KAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKF---------NH 114 +A F+ LHDIGK + FQ + TP S + F +H Sbjct: 66 RALAAFWAGLHDIGKIRVPFQLHENGPRRADSGKTPRAYELSVEPGYAFGDQAARDGQSH 125 Query: 115 GAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRW 174 AA +W + + + + + GH G + +R Sbjct: 126 EAAAHWWL------AGAFQEIGYPSSRRRPQSQLSHAVAQLLGGHGGRFHPVVHEKDARC 179 Query: 175 EMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSW 234 + A ++ R + + + + + P+ + +L G +L+DWL S Sbjct: 180 PLARHPGLGAGSWEEQRRVHFDEVRRV-VGATSVPQGRMTPEAAVVLTGVVTLSDWLASV 238 Query: 235 TT-TNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSN--KRCYEGVHALLDNGY 291 L E L Y+Q + A +L + L+ + + Sbjct: 239 EEGIRARLREEGWAGTPEDLDAYWQVARAAAPGLLRQTDLLGTGFAQPPAPAPGMESGLL 298 Query: 292 QPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATAN 351 QV PG+ V+ A +TE L A L A + +ALPT + A+ Sbjct: 299 ASMARQVPDLVAEQGPGMVVVTAAPSEERTEAILRAAAVLGHAANARGLFYALPTGSAAD 358 Query: 352 AMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSN 411 + ++ A + P L +S ++ A + E +W++ +N Sbjct: 359 THMAQVNDFAERALTGPWRSLLLHSSSRLKPAEAAAGWAHAQMTDEINAEPGEEWVASAN 418 Query: 412 K------KVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLL 465 + L +G T+D++L +VLPVK +R + V++VDE HA + + + Sbjct: 419 SWLNSHHRALLAALGTGTVDELLQAVLPVKFNVMRLFALSSKVVVVDEAHARGAWGHQFM 478 Query: 466 EAVLKAQADVGGSVILLSATLPMKQKQKLLDTY----GLHTDPVENNSAYPLINWRGVNG 521 + A + V+L AT + +L Y G ++PVE P ++ Sbjct: 479 LRFQEWAAALRIPVVLA-ATAADRSVDAMLAAYRRGAGGGSEPVEQPRRLPAWSFVDAGS 537 Query: 522 AQRFDLLAHPEQLPPRFSIQPE-PICLADMLPDLTMLERMIAAANAG-AQVCLICNLVDV 579 + AH Q P F I + D P + + AG + + Sbjct: 538 GK-----AHLPQQPAGFCRDSTLSITVVDGTPYAEIRAALAPMVAAGEGRAAVYRPTPAE 592 Query: 580 AQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVE 639 A ++RL E + L H + DR + F G+ +LV T ++E Sbjct: 593 AVRTFRRLSEDLP-GAQVILIHEQMRNKDRWRRLAACRRAFAAEGEVCGPSVLVTTPMLE 651 Query: 640 QSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHI 699 S + D +++ P L R +G + +L D + Sbjct: 652 HSRGLPADLVVSGPAPLAKLLARA----------PQSGRDRSRLVVLRAD------AASV 695 Query: 700 YSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEW-VGNGMDKFESAEC 758 + ++ RT + G ++ P+ + LD +Y D D W + ++ Sbjct: 696 LDDPALVRRTAMLLG--AGRAIALPEDLAELLDEVYADEFADRLGWAAARELRLLDNRRV 753 Query: 759 EKRFKARKVLQWAEEYSLQDNDETILAVTRD 789 + +A +W ++ D + ++RD Sbjct: 754 VRERRASGTARWLAVPGPRELDGDLALLSRD 784 >UniRef50_D0KYZ9 CRISPR-associated helicase Cas3 n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KYZ9_HALNC Length = 753 Score = 349 bits (895), Expect = 3e-94, Method: Composition-based stats. Identities = 131/875 (14%), Positives = 247/875 (28%), Gaps = 145/875 (16%) Query: 1 MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSK 60 ME ++I H K H L+ H VA A R Sbjct: 1 MEKIQHIAH--AKQDLDGNWNAP-HDLVDHLNCVAMRA-----------ADHARPFGG-- 44 Query: 61 QRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLY 120 + W HD+GKF RFQ ++ A S+ G + + H AG Sbjct: 45 ---QEWAHLAGLWHDLGKFRPRFQQYIRKASGFDFNADASIKGEAGK----APHSTAGAL 97 Query: 121 WFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASL 180 A ES + GHH + + S + Sbjct: 98 L-------------------ACDRFKESGRVLAYLIAGHHAGLYDWHSESSSLEYRLQQV 138 Query: 181 ASYAAQDKQAREEWISVLEALFLTPAG----LSINDIPPDCSSLLAGFCSLADWLGSWTT 236 S D+ E + + D +L AD+L Sbjct: 139 DSREELDQALAENPPAEIIKHRTFTPDMRTIPGGKDGFALWVRMLFSCLVDADFL----D 194 Query: 237 TNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQL 296 T +++ + + + Q + + + + N + L Sbjct: 195 TESYMDMDKSAQRGD--WQGMQKLLEQFDKFMARKTFAAEPTP--------VNQLRTDIL 244 Query: 297 QVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTR 356 + + PGL + PTG GKT +++A+A + + +I+ +P + Sbjct: 245 RQCREKSHEPPGLFSLTVPTGGGKTLSSMAFALEHAKRNNKRRIIYVIPYTSIIEQTADI 304 Query: 357 MEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFL 416 +I H N+ + ++ +SR E + Sbjct: 305 FRDIF-----GEAVIEHHSNAEVDANKENSRSRLACEN--------------------WD 339 Query: 417 GQIGVCTIDQVLISVLPVKHRFIR-GLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQA-D 474 I V T Q S+ K R I SV+++DE + VL Sbjct: 340 ASIVVTTNVQFFESLFAAKTSRCRKLHNIVDSVVVMDEAQLIPAEFLQPILDVLNLLTLH 399 Query: 475 VGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQL 534 G +V+L +AT P Y +++ P+ L Sbjct: 400 YGVTVVLSTATQPAL-----------------ATREYFDAKNNMRGLENVREIMDDPDAL 442 Query: 535 PPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQ 594 + + P T + + V I N + A + + E Sbjct: 443 YAQLERVNVRLPTDWNTP--TSWDTLANEIKQHNSVLTIVNRRNDAHELWDLMPE----- 495 Query: 595 VDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHC 654 A R + ++ + K V +++TQ+VE +DVDF + Sbjct: 496 -GTLHLSALMCGEHRSQVIKQIRARL----KERVPTRVISTQLVEAGVDVDFPVVYRALA 550 Query: 655 PADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIE 714 D + Q GR +R + R + +P + + + Sbjct: 551 GLDSIAQAAGRCNREGKLERG------EVVVFVPPKPAPPGLLRKGEDA-----CRSVLH 599 Query: 715 ELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEY 774 G L D + ++ + +Y ++D E + + A A+++ Sbjct: 600 NRTGKPLER-DLFARYFEKLYHACDLDAQNITK-------LLEVDGQTLAVNFRTAADKF 651 Query: 775 SLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVP 834 L ++++ + R L + + S L V + Sbjct: 652 KLIKDEDSAPVIVRYRG-------VDGNDDKVDELLNTLRKHGSERWLMRKLQRYTVTIH 704 Query: 835 FTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSI 869 +R +++ + + + + W + I Sbjct: 705 ---RREIIKLLSQGDVEEILPGLYIQISDWLYHPI 736 >UniRef50_B9MLS5 CRISPR-associated helicase Cas3 n=2 Tax=Clostridia RepID=B9MLS5_ANATD Length = 775 Score = 348 bits (892), Expect = 7e-94, Method: Composition-based stats. Identities = 160/899 (17%), Positives = 308/899 (34%), Gaps = 140/899 (15%) Query: 1 MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSK 60 M+ ++ I Y K K+ KG + + H + + + + + + + Sbjct: 1 MKAYEDIDLY-AKRFKT-EKGYEYQTIYEHTMTLLQNMEKLFKEYREEIEEGFQKLQIDL 58 Query: 61 QRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLY 120 + K L I HD+GK + FQ K + P + S + H + Sbjct: 59 EMFKYLLKLAIIYHDLGKANSNFQRKIRDKTKS--NEVPQVKCLSVE----VPHNFISIA 112 Query: 121 WFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASL 180 + +L D + +P +E+ + A+ H Q Sbjct: 113 FV--------ALEDEIDKGNISPEDFEN---LLFAIAFSHDRGFDFNYQ---------YF 152 Query: 181 ASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTF 240 Y +D ++L P+ + ++I + + DWL + Sbjct: 153 EKYICEDVSKYLTNKTLLPLFKELPSFPTKDEIEKSSNYVY----RTIDWLKEVMLKSYT 208 Query: 241 LFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLV 300 L+ + +S + ++ L + G + + Sbjct: 209 DLYNKNTIMRILLKGFLHRLDHSSSAGISTEEGKITDFSHKVESYLKEKGNFVGFKEFQL 268 Query: 301 DALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEAS 360 AL + ++ APTGSGKTE L +A +I+ LP + + NAM R+ Sbjct: 269 KALDFSNQNVILFAPTGSGKTEFGLNWA-------GRSKLIYTLPIRVSINAMYERLAK- 320 Query: 361 ASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIG 420 +F S + + H +S L + Q E+ + + + + I Sbjct: 321 ---IFGSNKVGILHSDSMIYLLEK-------YSQSAEDVQELESLFDNVNLARNLSFPII 370 Query: 421 VCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVI 480 V T DQ+ S L S +I+DE +Y ++ L+ ++ G Sbjct: 371 VTTGDQIFTSALKWPGFEKIYSLFLYSKIIIDEPQSYSPESLAIIIKTLEEIVNLNGRFC 430 Query: 481 LLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSI 540 L+SAT+ + L G ++ ++ S L + Sbjct: 431 LMSATVNPLVLKYL----GDISEYLQAYSDEELKKCWS-------------------HVV 467 Query: 541 QPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNN--TQVDID 598 +P+ + D + + I V +ICN V +Q Y+ +KE V ++ Sbjct: 468 SVKPLSILDCVDE-------IVNCGKQQNVLVICNTVRRSQEVYKAIKESIGNSDDVPVE 520 Query: 599 LFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADL 658 L H+RF RR+KE+ ++ + I+++TQ+VE SLD+D+D L T+ AD Sbjct: 521 LLHSRFLEGQRRQKEHFIL------SNQRKNSIVISTQLVEASLDIDYDVLFTELASADS 574 Query: 659 LFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNG 718 L QR+GR++R RP + P IL + G GR ++ RT++ ++ +G Sbjct: 575 LLQRMGRVYRK----RPYEGQKPNVIILTKEPSGIGR----VYQKEIVTRTEEFLKRFDG 626 Query: 719 ASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQD 778 + ++ + YD + ++ + +E + + D Sbjct: 627 RKITEY-DKKELNEYAYDVEVLSNTNFMKSFKKAYELLKLGFK---------------AD 670 Query: 779 NDETILAVTRDGEMSLPLLPYVQTSSGKQL-------LDGQVYEDLSHEQQYEALALNRV 831 + RD +++ +P ++ + + + Q + V Sbjct: 671 RKIEAQKIFRDV-VTVEGIPRKVFEVNEETIRECLKRIGSKSLSPIEKLQLISDVRKYTV 729 Query: 832 NVPFTW--KRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMTRVIPANPK 888 VP + K SE + G+ L Y + G+ + P + Sbjct: 730 TVPVYFFAKGGASEYSKKLGIFIL----------------NCDYDDELGL--LPPKESE 770 >UniRef50_A4J384 Metal dependent phosphohydrolase n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J384_DESRM Length = 731 Score = 348 bits (891), Expect = 8e-94, Method: Composition-based stats. Identities = 130/881 (14%), Positives = 254/881 (28%), Gaps = 174/881 (19%) Query: 9 HYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLL 68 +Y+ S K N HLL H V +TF ++ + Sbjct: 2 NYYAHSDKE-KDKNQWHLLRDHLQGTG-----------VTASTFAKSFGGET------IA 43 Query: 69 FFIAL-HDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSL 127 L HD+GK+ FQ + + K +H AG Sbjct: 44 HVAGLLHDLGKYSPEFQKRLEGHSI------------------KVDHSTAGAI------- 78 Query: 128 SEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHS---QDQDKSRWEMPASLASYA 184 + + GHH + D+ + L Y Sbjct: 79 ------------EGGKRYGLIGKILAYIIAGHHSGLPDWGSVADETSLEARLKKKLYDYM 126 Query: 185 AQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNE 244 + K+ + + P + + LL AD+L + N Sbjct: 127 SFSKEINLPVEKDITMPAIRPI-VGAGFSVQFLTRLLYACLVDADFLDTERALNPEKAAA 185 Query: 245 DAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALP 304 + + + L N + + L + Sbjct: 186 RVKKYS------LKKLSNNLEQYLNNL--------CTKASDTAINRKRYKILANCREKAE 231 Query: 305 VAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHL 364 PGL + PTG GKT ++L++A + + + + + +P + + Sbjct: 232 CEPGLFTLTVPTGGGKTLSSLSFALRHAIRYEKERIFYVIPFTSIIEQN----AMVFKRV 287 Query: 365 FSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTI 424 N++ H N + Q + + + + + + T Sbjct: 288 IGEENVLEHHSNFAYPQEDQWEMENDLAD----------KLAQQKLATENWDMPVIATTN 337 Query: 425 DQVLISVLPVKHRFIRG-LGIGRSVLIVDEVHAYDT-YMNGLLEAVLKAQADVGGSVILL 482 Q S+ K R + SV+I+DE T ++ L AV++ A+ +++L Sbjct: 338 VQFFESLFAAKSSRCRKIHNLANSVIIIDEAQMIPTGFLKPCLNAVVELVANYHATIVLC 397 Query: 483 SATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQP 542 +AT P IN +++ +PE+L F Sbjct: 398 TATQPA-------------------------INKFLPKEIVPVEIIDNPEELYKAFK--R 430 Query: 543 EPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHA 602 + + D+ ++E++++ QV I N A++ Y+ ++ Sbjct: 431 VQVHNIGTVSDVELVEKLVSQD----QVLCIVNSKKHARILYEGIR-----GDGTFHLST 481 Query: 603 RFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQR 662 R R + V K +++TQ++E +D+DF + D + Q Sbjct: 482 RMCPVHRTKVLEMVKERL----KEGQVCRVISTQLIEAGVDIDFPVVYRSMAGIDSIAQS 537 Query: 663 LGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQH---IEELNGA 719 GR +R + + P+ G R + RT + + Sbjct: 538 AGRCNREGLREMG------QVYVFWPEKHGMPRGW--------LNRTASLGSMVFKRYED 583 Query: 720 SLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDN 779 L + + S+YD + + E ++R AE++ L + Sbjct: 584 PLGLEG-VKAYFTSLYDVDAAELDKKCI-----MEDIREQERQLRFPFRTIAEKFKLMN- 636 Query: 780 DETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKR 839 + + ++ L + +L L V V R Sbjct: 637 ------------DNTSTIVIPWDKYCQKTL-AEAESNLFSGSYARKLQRYGVAVYEKEFR 683 Query: 840 SFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMT 880 E G L + G +V + + Y+ + G+ Sbjct: 684 ELL----EFGALEVVG---GRFYVLKEDMFDAYYSQETGLK 717 >UniRef50_Q9KFY4 BH0336 protein n=2 Tax=Bacillus RepID=Q9KFY4_BACHD Length = 800 Score = 347 bits (890), Expect = 1e-93, Method: Composition-based stats. Identities = 134/870 (15%), Positives = 260/870 (29%), Gaps = 110/870 (12%) Query: 39 DCWWDQSVVLQNTFCRNEMLSKQRVKAW----LLFFIAL-HDIGKFDIRFQYKSAESWLK 93 L+ C + L++ + L HD+GK+ F K Sbjct: 7 REVDKVIQTLKEHLCGVQCLAETFGAKLRLQHVAGLAGLLHDLGKYTNEF--KDYIYKAV 64 Query: 94 LNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWV 153 P + + + +H AG Q + + H Sbjct: 65 FEPEL------AEKKRGQVDHSTAGGRLLYQ----------MLHDRENSFHEKLLAEVVG 108 Query: 154 EAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVL--EALFLTPAGLSIN 211 A+ HH + + L + + A E + + EA +++ Sbjct: 109 NAIISHHSNLQDYISPTIESNFLTRVLEKELPEYESAVERFFQEVMTEAELARYVAKAVD 168 Query: 212 DIPPD----------CSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQ 261 +I + + AD + T E+ P+ L ++ + Sbjct: 169 EIKQFTDNSPTQSFFLTKYIFSCLIDADR--TNTRMFDEQAREEEPTQPQQLFEHYHQQL 226 Query: 262 QDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKT 321 + L+ N + + G+ + PTG GKT Sbjct: 227 LNHLASLKE----------SDSAQKPINVLRSAMSEQCESFAMRPSGIYTLSIPTGGGKT 276 Query: 322 ETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNH 381 +L YA K + +I+ +P + N++ H N Sbjct: 277 LASLRYALKHAQEYNKQRIIYIVPFTTIIEQNAQEVRNIL---GDDENILEHHSNVV--- 330 Query: 382 LFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRG 441 ++E V + + + + I T+ Q L +R R Sbjct: 331 -------EDSENGDEQEDGVITKKERLRLARDNWDRPIIFTTLVQFLNVFYAKGNRNTRR 383 Query: 442 LG-IGRSVLIVDEVHAYDTYMNGLLEAVLKAQADV-GGSVILLSATLPMKQKQKLLDTYG 499 L + SVLI DEV T L L + S++L +AT P + K Sbjct: 384 LHNLSHSVLIFDEVQKVPTKCVSLFNEALNFLKEFAHCSILLCTATQPTLENVKHSLLKD 443 Query: 500 LHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLER 559 + V+N L + R I + + + + E Sbjct: 444 RDGEIVQN--------------------LTEVSEAFKRVEILDKT---DQPMTNERLAEW 480 Query: 560 MIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISN 619 + A + +I N V + Y++L+ + + R+++ + + + Sbjct: 481 VRDEAPSWGSTLIILNTKKVVKDLYEKLE---GGPLPVFHLSTSMCAAHRKDQLDEIRAL 537 Query: 620 FGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFE 679 K I V TQ++E +DV F +I D + Q GR +RH + + Sbjct: 538 L----KEGTPFICVTTQLIEAGVDVSFKCVIRSLAGLDSIAQAAGRCNRHGEEQLQYVYV 593 Query: 680 IPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAE 739 I A L + + I N + + E +L A R++ Y + Sbjct: 594 IDHAEETLSKLKEIEVGQEIAGN---VLARFKKKAEKYEGNLLSQAAMREYFRYYYSKMD 650 Query: 740 MDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYS------LQDNDETILAVTRDGEMS 793 + +V + V + + L + +T R + + Sbjct: 651 ANLNYFVKEVDKDMTKLLMSHAVENSYVTYYQKNTGTHFPLLLNGSYKTAADHFRVIDQN 710 Query: 794 LP--LLPYVQTSSGKQ-LLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGL 850 ++PY + L G+ +DLS + + VN+ + + ++ E + Sbjct: 711 TTSAIVPYGEGQDIIAQLNSGEWVDDLS--KVLKKAQQYTVNL---YSQEIDQLKKEGAI 765 Query: 851 LW-LEGKQNLDGWVWQGNSIVITYTGDEGM 879 + L+G W + + + G+ GM Sbjct: 766 VMHLDGMVYELKESWYSHQYGVDFKGEGGM 795 >UniRef50_C6J187 Metal dependent phosphohydrolase n=3 Tax=Bacillales RepID=C6J187_9BACL Length = 805 Score = 346 bits (888), Expect = 2e-93, Method: Composition-based stats. Identities = 120/890 (13%), Positives = 259/890 (29%), Gaps = 118/890 (13%) Query: 15 SKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIAL- 73 + + +I L H L V L F L + L Sbjct: 4 AHVRERDKEIQPLKAHLLGV-----------QRLAEQFGAKLGL------KHVAGLAGLL 46 Query: 74 HDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLG 133 HD+GK+ +FQ + P + + +H AG Sbjct: 47 HDLGKYSDKFQEYI-------DVVAFHPEWPQPK-RGEVDHSTAGGRLLF---------- 88 Query: 134 DFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREE 193 ++ A+ HH + + + + + A E Sbjct: 89 SLLHHKESTFLEKLLAEIVGNAIISHHSNLQDYLSPEIKSDYLRRVHDTDLPEYDLAVER 148 Query: 194 WIS--VLEALFLTPAGLSINDIPPD----------CSSLLAGFCSLADWLGSWTTTNTFL 241 + + E + ++N++ + + AD + + Sbjct: 149 FFQDTMSEEELIRYIQAAVNELEQFWDRTPAQSFFVTKYIFSCLIDADRTDT-RCFEEQV 207 Query: 242 FNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVD 301 ++ + TY++ +++ + S + Q V Sbjct: 208 EVAESNQHLQLFETYYRRLMNHLTKLKDKSNASEPINVLRAKMS----------EQCDVF 257 Query: 302 ALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASA 361 A G+ + PTG GKT +L YA + + +I+ +P + Sbjct: 258 AAERPSGIYTLSIPTGGGKTLASLRYALRHACKYEKQRIIYVVPFTTIIEQNADEVRKIL 317 Query: 362 SHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGV 421 + +++ H N + + + E + + + + + + + I Sbjct: 318 Q---DNEHILEHHSNVI------EEEQKDMEEGDEADDGLITDKEKLRLARDNWDSPIIF 368 Query: 422 CTIDQVLISVLPVKHRFIRGLG-IGRSVLIVDEVHAYDTYMNGLLEAVLKAQA-DVGGSV 479 T+ Q L +R R L + SV++ DEV + L L D S+ Sbjct: 369 TTLVQFLNVFYAKGNRNTRRLHNLSHSVIVFDEVQKVPIHCISLFNEALNFLKQDAHCSI 428 Query: 480 ILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFS 539 +L +AT P N + L+ R +++++ ++ F Sbjct: 429 LLCTATQPTL-----------------ENVKHSLLKERDG------EIVSNLTEVAKAFK 465 Query: 540 IQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDL 599 + + + T+ + + + N +I N V + Y++LK+ + + Sbjct: 466 RVELIDRTEEPMTNETLADWVKSEINGWGSTLIILNTKKVVKDLYEKLKDAA---MPVYH 522 Query: 600 FHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLL 659 R+++ + + V I V TQ++E +DV F +I D + Sbjct: 523 LSTSMCAAHRKDQLKEIRDML----DQQVPFICVTTQLIEAGVDVSFKCVIRSLAGLDSI 578 Query: 660 FQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRV---MWRTQQHIEEL 716 Q GR +RH I+ E + + I + + + + Sbjct: 579 AQAAGRCNRHGEDESQ------NVYIINHAEEAVSKLKEIKVGKEMSSHVLARFKKKADQ 632 Query: 717 NGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYS- 775 +L P A ++ Y+ E + +V + + V + +++ Sbjct: 633 YEGNLLLPKAMSEYFRYYYNRMEANLNYYVKKLDKEMTKLLMSLSQENDYVTHYRKKHGT 692 Query: 776 -----LQDNDETILAVTRDGEM-SLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALN 829 L + +T + + + +L + + Sbjct: 693 SFPLILNGSYKTAAEHFQVIDQKTTSVLVPYGGGKELIAQLNSGAWLEDVTKFLKQAQQF 752 Query: 830 RVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGM 879 VN+ D + L+G W + + G+ GM Sbjct: 753 TVNLYSQEMEQLK--RDNAVVEHLDGMIYEVRENWYSDEYGVDLKGEGGM 800 >UniRef50_A9B8P3 CRISPR-associated helicase Cas3 n=6 Tax=Chloroflexi (class) RepID=A9B8P3_HERA2 Length = 804 Score = 346 bits (888), Expect = 2e-93, Method: Composition-based stats. Identities = 160/865 (18%), Positives = 287/865 (33%), Gaps = 124/865 (14%) Query: 39 DCWWDQSVVLQNTFCRNEMLSKQ--------RVKAWLLFFIALHDIGKFDIRFQYKSAES 90 + + ++ + + L + LHD GK FQ + Sbjct: 28 ETLARHTWLVVTKVAELAKIRPDLTVVANTADLWHLLYWGCFLHDFGKATGGFQQQLQGV 87 Query: 91 WLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWF 150 H L + + + AA P Sbjct: 88 S-----------------WNGHRHEVISLVFLD---------------WIAANFPKHQQA 115 Query: 151 PWVEAVTGHHG-----FILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTP 205 A+ HH + D + L + E + L L Sbjct: 116 WLSAAIASHHRDRGIIQEKYVVDSVLAEAWSTFDLTHVPLMWRWLTEYANQWIGLLGLDA 175 Query: 206 AGLSINDIPPDCSSL----LAGFCSLADWLGSWTTTNTFLFNEDAPSDINAL---RTYFQ 258 G+ P ++ + WL + ++ A + + L R Sbjct: 176 VGVRPLQFPNADQAIQHVQTDACSRIRYWLCQYYRLKQVFDDQPAHAPVPLLILLRGLTT 235 Query: 259 DRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGS 318 AS L + +L+ QP Q ++ APTGS Sbjct: 236 TADHMASAHLAAIPQPIQENWQALAKRILNADQQPYSHQQQSADAHNT--SCLLIAPTGS 293 Query: 319 GKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSR 378 GKTE AL +A +Q + +ALP QA+ NAM R+ A F + L HG + Sbjct: 294 GKTEAALYWALGEG-EQPVPRIFYALPFQASMNAMFDRLRQPAKG-FGEQAVGLQHGRAL 351 Query: 379 FNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRF 438 + ++S E G + + ++ + + V + Q+L ++ +K Sbjct: 352 QVLYLRLLES----ENGLDSRTAAEGERWERNINSLHARPLKVFSPYQMLKALFQIKGFE 407 Query: 439 IRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQ-ADVGGSVILLSATLPMKQKQKLLDT 497 ++ I DE+HAY+ L+ ++ + ++SAT P ++ L + Sbjct: 408 AILSDYAQARFIFDEIHAYEPQRLALIICLINYLSEHFAATFFVMSATFPTIIREHLANA 467 Query: 498 YGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTML 557 G H + S + + + + L L + + Sbjct: 468 LGRHQVIHASASLF-------------------------QAFARHQLQLLDGELISASSI 502 Query: 558 ERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVI 617 E ++ AG QV + N V +Q L++ + D+ L H+RFT+ DR E RV+ Sbjct: 503 EHIVNDFKAGKQVLVCANTVRRSQTILALLRDAGVAESDLLLIHSRFTMKDRSALEQRVV 562 Query: 618 SNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAG 677 + IL+ TQV+E SL++D D L + P + L QR GR++R +K Sbjct: 563 QRCQLGLDQPEPFILITTQVIEVSLNIDLDTLYSDPAPLEALLQRFGRVNRSRKKG---- 618 Query: 678 FEIPVATILLPDGEG---YGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSI 734 I + +G YGR + R++ T +E+ NG + QWLD+I Sbjct: 619 --IVPVHVFREPRDGQGVYGRSKDPKQQGRIVQVTLSELEKHNG-EIIDESMIDQWLDTI 675 Query: 735 YDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSL 794 Y DA + +W +++A+ A ++D+T + ++ Sbjct: 676 YADAIL-AKQWQDEYQKIYDNAQW-----------IAHNLRPFESDKTTEDQFDELFDNV 723 Query: 795 PLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWLE 854 ++P + LL+ Y + S + ++GL+ Sbjct: 724 DVIPQSLVQTYLDLLNNHEYVESSRYFVGISKQKYAQF-------------KQNGLILAL 770 Query: 855 GKQNLDGWVWQGNSIVITYTGDEGM 879 L W I + Y+ + G+ Sbjct: 771 EDAALKHPRW---IINLPYSSESGL 792 >UniRef50_B8DAB0 Metal dependent phosphohydrolase n=8 Tax=Listeria monocytogenes RepID=B8DAB0_LISMH Length = 727 Score = 346 bits (886), Expect = 3e-93, Method: Composition-based stats. Identities = 145/840 (17%), Positives = 262/840 (31%), Gaps = 168/840 (20%) Query: 61 QRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLY 120 + L LHD+GK ++ FQ K G ++ ++ HG + Sbjct: 36 EIDWYLLELVCLLHDLGKMNLLFQTKL---------------GNASGKGKEIPHGYLSVA 80 Query: 121 WFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQD----KSRWEM 176 + L E + + +AV HH D + R E Sbjct: 81 FVPDSKLEE------------MGYSEDEIKVVYQAVARHHERKYDFSDSEWKNEIIRLEE 128 Query: 177 PASLASYAAQDKQAREEWISVLEALFLTP-----AGLSINDIPPDCS-SLLAGFCSLADW 230 +Y+ + A E+ S +E L+ P G S+ D LL G + D+ Sbjct: 129 QWEGFNYSQLGENA--EYSSEVEMLYFYPGSRIFEGNSVADTETFKKYVLLKGLLNRIDF 186 Query: 231 LGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNG 290 S LE L+ + + Sbjct: 187 AASGGIDV----------------------------ELENDFLIDSMDVQLAHFKAENPE 218 Query: 291 YQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATA 350 LQ + V+ A TG GKTE L + + F LP +A Sbjct: 219 ADWNALQKYMMQHQNEN--IVVIAETGMGKTEAGLLWL-------GNNKGFFTLPLRAAI 269 Query: 351 NAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQS 410 NA+ R+ + + + L H + +L + ++ + Sbjct: 270 NAIYERITKNIVTTNQAERVGLLHSETYSQYLLHEGNAEMDIDEY-------------YT 316 Query: 411 NKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLK 470 + I +CT+DQ+ V + + S +I+DE+ Y + L L Sbjct: 317 RTRQMSLPITICTLDQLFDFVFRYAGFEHKLATLSYSKVIIDEIQMYSPDLLAYLILGLS 376 Query: 471 AQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAH 530 GG +++ATLP LL+ P E + +++ Sbjct: 377 YIDKFGGKFCIMTATLPGIVTDLLLENGVDFVQPEEK--------FVSSRIRHSMEMVHT 428 Query: 531 PEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKEL 590 + I ++ +ICN + A+ Y LK+ Sbjct: 429 ------------------------EIESEFIKPFFNNNRILVICNTISKAKKIYSELKDH 464 Query: 591 NNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLI 650 + +I L H++F DR KE + + K+ + I VATQVVE SLD+DFD L Sbjct: 465 FQGE-EIHLIHSQFIKRDRSAKEKAIFKDGQKDSTKK--CIWVATQVVEASLDIDFDLLF 521 Query: 651 TQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQ 710 T+ + LFQR+GR +R+ ++ + G I+ + + ++ Sbjct: 522 TELSDVNGLFQRMGRCYRNR------ALDVDTNVYVFDGGAKVCSGVGIFIDKLIFENSK 575 Query: 711 QHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQW 770 + E G + + + ++ +Y + E+ + + ++ Sbjct: 576 AILNEHAG--VLTEEKKMELVEQVYSAEALRGSEFYNDLIG------------TINYVKA 621 Query: 771 AEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYE--------DLSHEQQ 822 + Y L + + R+ S+ ++P + ++ + Sbjct: 622 FDSYEL--DKAEVRMRFRNI-NSVSVIPEEVWQDNVEEINSYFVTLRKTSKEISTKEKMI 678 Query: 823 YEA-LALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMTR 881 LA V+VP + VV E Y+ D G+ Sbjct: 679 ARTNLAEFMVSVPDYLYKKGESVVREINRYE------------SVIEFKCGYSSDVGVFM 726 >UniRef50_C6Q963 CRISPR-associated helicase Cas3 n=1 Tax=Thermoanaerobacter mathranii subsp. mathranii str. A3 RepID=C6Q963_9THEO Length = 777 Score = 345 bits (884), Expect = 5e-93, Method: Composition-based stats. Identities = 158/888 (17%), Positives = 294/888 (33%), Gaps = 139/888 (15%) Query: 1 MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSK 60 +E +K I Y K KG++ + H +D+ + +++ C+ + Sbjct: 3 IESYKDIELY-AK-RFKGDKGSEYQTIYQHTVDLLNNMEKLFEEYEEEIGEGCKKLQIDY 60 Query: 61 QRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLY 120 Q++K L I HD+GK + +FQ K E + ++ H Sbjct: 61 QKLKYLLKLAIIYHDLGKANSKFQQKIRERTKVHE------VPQVKGLSKEVPHNFLSTA 114 Query: 121 WFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASL 180 + + + E+ + H D D + Sbjct: 115 FVDLEDEIEK----------GNITYEDFQNLLFTIAFSH----DRDFDVDFQYFNKYICE 160 Query: 181 ASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGF--CSLADWLGSWTTTN 238 + Q + + +L ++ P + + ++ L D Sbjct: 161 DVSKYIENQTLKPLLELLPSV---PDRYKMVESSNYTYRVINQLRELMLKD--------- 208 Query: 239 TFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQV 298 ++ ++ L+ +S + N + L G Sbjct: 209 SYDLSDKKVVFRILLKGLLHRLDHSSSAGINAEEAKINDFPEKVEVYLKRKGSFTGFKNF 268 Query: 299 LVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRME 358 A+ ++ V+ APTGSGKTE L +A+K +I+ LP + + NAM R+ Sbjct: 269 QKKAIELSEKSVVLFAPTGSGKTEFGLNWAFK-------SKLIYTLPIRVSINAMYERLA 321 Query: 359 ASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQ 418 +F + + H +S L + + + + S K Sbjct: 322 K----VFGEDKVGILHSDSMIYLLEKHM-------DLERGNQELEALFDSVDLAKNLSLP 370 Query: 419 IGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGS 478 I V T DQ+ S L S +I+DE +Y ++ L+ ++ G Sbjct: 371 IIVTTGDQIFTSALKWPGFEKIYSLFLYSKIIIDEPQSYSPESLAIIIKTLEEIINLNGK 430 Query: 479 VILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRF 538 L+SAT+ + L + E L R+ Sbjct: 431 FCLMSATINPLILKYL-------------------------GDYAEYVQAYSDEDLKRRY 465 Query: 539 SIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNN--TQVD 596 S I L L + +I A V +ICN V +Q YQ +KE ++ Sbjct: 466 S----HIISIKELSILDCVAEIIEHAKQ-KNVLVICNTVKRSQEVYQVIKENLKKFEEIP 520 Query: 597 IDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPA 656 ++L H+RF +R+KE VI + I+++TQ+VE SLD+D+D L T+ A Sbjct: 521 VELLHSRFLEGQKRQKEQIVI------SDKRKNGIIISTQLVEASLDIDYDILFTELASA 574 Query: 657 DLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEEL 716 D L QR+GR++R R P IL D G G+ ++ RT+ +++ Sbjct: 575 DSLLQRMGRVYRK----RTYNELRPNVIILTKDPSGVGK----VYQKEIVDRTEAFLKKF 626 Query: 717 NGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSL 776 +G + ++ + +YD + ++ +E E R Sbjct: 627 DGNKITEY-DKKELNEYVYDIDALSSTNFISKFKKAYELLELGFR--------------- 670 Query: 777 QDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDG-------QVYEDLSHEQQYEALALN 829 D + RD +++ +P + ++ + + + + ++ Sbjct: 671 ADRKIEAQKIFRDV-VTISGIPREIFDKNIEEINEALKKINSKSTKSIEKLKLISSIKKY 729 Query: 830 RVNVP---------------FTWKRSFSEVVDEDGLLWLEGKQNLDGW 862 V P E D+ GL+ + + D W Sbjct: 730 TVTAPAYFFARGGASCYDKDLGLYILDCEYDDQLGLIPPKELEQSDIW 777 >UniRef50_C7N973 CRISPR-associated helicase Cas3 n=2 Tax=Bacteria RepID=C7N973_LEPBD Length = 804 Score = 345 bits (884), Expect = 5e-93, Method: Composition-based stats. Identities = 147/881 (16%), Positives = 296/881 (33%), Gaps = 141/881 (16%) Query: 38 ADCWWDQSVVLQNTFCRNEMLSKQR--VKAWLLFFIALHDIGKFDIRFQYKSAESWLKLN 95 + + + L N F + + K LL HD+GK + +FQ K + Sbjct: 11 GETIMEHTENLINNFKNFFTIYSEINVDKELLLLACIYHDLGKINKKFQSKLSGQKQ--- 67 Query: 96 PATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEA 155 + HG + + SLSE + Sbjct: 68 -------------NGELPHGLLSTSFIDSKSLSE------------NGFDKSDIKVLSYS 102 Query: 156 VTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPP 215 V HH +D + E +S + +++ L+ ++ +I + Sbjct: 103 VALHH-----ERDISEIEEEDFSSEIELMNIEADYFLKYLEKLQNIYFDYVNKNIEENLK 157 Query: 216 DCSSLL-----------------AGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQ 258 + G D++ S T + Y Sbjct: 158 YSIFKIENEKVKLKKLSKKYYKLNGRIYSQDFILSEKETFETFQKYVMLKGLLNKIDY-- 215 Query: 259 DRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGS 318 V E + + K + L + + ++ + V+ A TG Sbjct: 216 -AASSYIPVEEKNDFLEEKMDDFLKNVLKKDNPKNDWNELQKFMIHNQNENVVVVAQTGY 274 Query: 319 GKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSR 378 GKTE L + + F LP + N++ R++ + L H + R Sbjct: 275 GKTEAGLLWI-------GNNKGFFTLPLRVAINSIFNRVKNQIVIEKLENRIGLLHSDFR 327 Query: 379 FNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRF 438 ++ + K + + + ++ K + VCTIDQ+ V Sbjct: 328 EIYIEDTKKKEKNNLEKMDNDDL----FMYIDKTKQLSLPLTVCTIDQLFDFVFRAPGFE 383 Query: 439 IRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTY 498 ++ + S +++DE+ Y T + L LK D GG +++ATLP L Sbjct: 384 LKVATLSYSKVVIDEIQMYSTDLLAYLIYGLKYITDFGGKFAIMTATLPGIIIDLLKK-- 441 Query: 499 GLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLE 558 + +E + P I N +R ++ + + F Sbjct: 442 ----EEIEFVTTEPFI-----NDKKRHNIKVLKDTINAEF-------------------- 472 Query: 559 RMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVIS 618 I ++ ++CN V ++ Y+ LK L +++L H+RF DR +KE + Sbjct: 473 --IKENYKDNKILVVCNTVKKSKQMYENLKNLGIECKELNLLHSRFIKKDRAKKEKEISE 530 Query: 619 -----NFGKNGKRNVG-------RILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRL 666 F ++ K+ I + TQVVE SLD+DFD LIT+ + LFQR+GR Sbjct: 531 FANPKRFKQSVKKERKSKNIFENGIWIGTQVVEASLDLDFDILITELSDLNGLFQRMGRC 590 Query: 667 HRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDA 726 +R+ R E + + G + + + + ++++ + ++G L Sbjct: 591 YRN----REILDEKYNCYVFTEECSGIKGSKAV-IDKEIHQKSKEALINIDG--LLTEKE 643 Query: 727 YRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAV 786 + +D +Y + + E+ G + + + EY ++ + + Sbjct: 644 KLELIDKVYSTESLKDTEYYGKLVKNIY-----------ALKNYIVEYEKTKSE--VQKI 690 Query: 787 TRDGEMSLPLLPYVQTSSGKQLLDGQV-----YEDLSHEQQYEALALNRVNVPFT---WK 838 R+ S ++P + K+ ++ + +E++ + L ++ +K Sbjct: 691 FRNIA-SRDIIPKIIYQENKEEIEKNIEILQKKTKGLNEKERKNLRSEKIEARREINQFK 749 Query: 839 RSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGM 879 + E +D K ++ + + Y+ ++G Sbjct: 750 VAIPEYELDDISPEQVEKMEINDYE-TLIILDCDYSYEKGF 789 >UniRef50_C6LAQ9 CRISPR-associated helicase Cas3 domain protein n=7 Tax=Clostridiales RepID=C6LAQ9_9FIRM Length = 715 Score = 343 bits (879), Expect = 2e-92, Method: Composition-based stats. Identities = 125/777 (16%), Positives = 233/777 (29%), Gaps = 159/777 (20%) Query: 22 NDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIAL-HDIGKFD 80 D + H + A VL F + + L HDIGK+ Sbjct: 11 GDEQTVKEHLENTA-----------VLCGKFAESFGAYD------AGYCCGLLHDIGKYS 53 Query: 81 IRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFD 140 +FQ + S + +H AG + Sbjct: 54 RKFQQRIRGSEQR------------------VDHATAGAKVCWEK--------------- 80 Query: 141 AAPHPYESWFPWVEAVTGHH-GFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVL- 198 + + GHH G D S +D +A E I + Sbjct: 81 -----KGMYQFLSYCIAGHHAGLPDTGGSGDISTDGTMTGRMRKKLEDFEAYAEEIKIPM 135 Query: 199 --EALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTY 256 F +I+ +L AD+L T +F+ ++ + Sbjct: 136 LGNPPFQPVKSENIDFFFSMFIRMLYSCLVDADYL----DTESFMNRKEHVREQGETIAV 191 Query: 257 FQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPT 316 DR + +S NG + L+ ++ GL + PT Sbjct: 192 LCDRLEKHISDWLKQEDLST-----------VNGRRTEILKHCMEMGEADKGLFRLTVPT 240 Query: 317 GSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGN 376 G GKT +LA+A K ++ + VI+ +P + + + N++ H N Sbjct: 241 GGGKTIASLAFALKHAEKHHMERVIYVIPYTSIIEQN----AKVFAEILGRENVLENHCN 296 Query: 377 SRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKH 436 + + Q + + + V T Q S+ K Sbjct: 297 I--------------------DYELDEELRPMQLAAENWDKPVIVTTNVQFFESLFSNKS 336 Query: 437 RFIRGLG-IGRSVLIVDEVHAYD-TYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKL 494 R L + SV+I DE Y+ + A+ + S++L +AT P + Sbjct: 337 SRCRKLHNMANSVIIFDEAQMLPNDYLKPCIAAMEQLLRYYRSSIVLCTATQPALKNI-- 394 Query: 495 LDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDL 554 L + + + + R SI D Sbjct: 395 ------------------LSEDIDIASIELCPRMEEQFRFFKRVSIHNLERISED----- 431 Query: 555 TMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKEN 614 ++ Q I N AQ YQ++K + R+ + Sbjct: 432 ----ELVHRLETEHQALCILNTRKRAQKIYQQVKGKG-----VYHLSTTMYPVHRKAILD 482 Query: 615 RVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYR 674 ++ K I+V+T +VE +D+DF + Q D + Q GR +R ++ Sbjct: 483 KIRERLKKQ----ERCIVVSTSLVEAGVDLDFQTVYRQMTGVDSIIQAAGRCNREGKRNA 538 Query: 675 PAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSI 734 F I +G E + + T+ + + + D ++ + Sbjct: 539 DTCFT----YIFSLEGR-----EDVPGQRQQTEITESLL--YDKRNPDSLDTINRYFKML 587 Query: 735 YDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGE 791 Y + G+ +DK + K+ + ++E+++ + + + +TR+GE Sbjct: 588 YH--------FKGDNLDKKRIMDKFKKSNFQ-FATVSKEFTIIEENTKTILITREGE 635 >UniRef50_B5YAX8 CRISPR-associated helicase Cas3 n=1 Tax=Dictyoglomus thermophilum H-6-12 RepID=B5YAX8_DICT6 Length = 755 Score = 343 bits (879), Expect = 2e-92, Method: Composition-based stats. Identities = 157/858 (18%), Positives = 284/858 (33%), Gaps = 143/858 (16%) Query: 27 LIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYK 86 L H + + ++ E + ++ L HD+GK + FQ K Sbjct: 26 LEEHTSLLLKNLELLKERYYEEIKRVLEKENYNSEKFWEILKIAALYHDLGKINSLFQNK 85 Query: 87 SAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPY 146 E K ++ ++ H +++LS++ Y Sbjct: 86 IRELLGK--------EKIESRFSQEIPHNFLSPALLPKETLSKKIAE------------Y 125 Query: 147 ESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPA 206 E F + A+ HH L + E +K W+ + F Sbjct: 126 EDIFTLIYAIIYHHYRDLDFNE------EYFKDYIKEEVLNKVDHLSWVKKYDENFG--- 176 Query: 207 GLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASR 266 + + + LL + + Y D A Sbjct: 177 --NSESLGNEYLWLL------------RDRGKIENLEKKLKFIMLKGLLYRLDHSSSAHV 222 Query: 267 VLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALA 326 +E + + ++ N + Q L ++ APTGSGKTE A+ Sbjct: 223 EIEKERIRNCEKLLISYLIKKPNSIGLKPFQKKAIHL--RDKNILLVAPTGSGKTEFAVN 280 Query: 327 YAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSI 386 + D ++ LP + + NAM R++ +F + L HG+ + L Sbjct: 281 WI-------GNDKAVYTLPLRVSVNAMYERLKE----IFGKDKIGLLHGDCAYYGL---- 325 Query: 387 KSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGR 446 ++ + ++ + I V T DQ+ IS Sbjct: 326 ------DEIRTLENDFQEHLHHVTSSRQLSYPITVSTADQIFISFFHFPGYEKIFSIFPY 379 Query: 447 SVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVE 506 + ++VDE AY + ++ LK +VGG L+SAT + +L D + Sbjct: 380 TKIVVDEPQAYTSESLAVIVEGLKRIDNVGGKFCLMSATFYPILRNELQDISEIIEVEAS 439 Query: 507 NNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANA 566 NNS+ + +PE+ M+ +I Sbjct: 440 NNSS--------------HFIRYYPEK------------------DIEDMISEIIENYKK 467 Query: 567 GAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKR 626 G +V +I N V AQ Y L+ +N ++ ++L H+RF DR KE ++ + K Sbjct: 468 GKKVLVITNTVKKAQSIYNLLR--SNKELKVNLLHSRFIWKDRNMKEKQIF----LDEKS 521 Query: 627 NVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATIL 686 + I ++TQ+VE SLD+DFD L ++ P D L QR+GR++R +IP I Sbjct: 522 HAPCIWISTQIVEASLDIDFDILFSELAPLDTLIQRMGRVYRKREYSE----DIPNIVIA 577 Query: 687 LPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWV 746 G+ G+ + ++ T + E+N L + ++ +Y ++ ++ Sbjct: 578 GSLGKPSGKSH--VYDSALIDATHNILSEINTKKL-DERIKKMLVERLYSLEQLANTKYY 634 Query: 747 GNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGK 806 D + +KA L+ + N + +P + K Sbjct: 635 KKFRDY--QKLLKLEYKAENKLEAERIFRRISN--------------IEAIPVEVYENNK 678 Query: 807 QLL-----DGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDG 861 + L + L Q L VN+P K ++ + L L Sbjct: 679 EKLLEIQEKIYSKDALKKLQGLRELKDLTVNIPLEIKDYAQNLISLEKDLELRIFL---- 734 Query: 862 WVWQGNSIVITYTGDEGM 879 I + Y + G+ Sbjct: 735 -------INLNYDTELGL 745 >UniRef50_UPI00018510E1 hypothetical protein Bcoam_15151 n=1 Tax=Bacillus coahuilensis m4-4 RepID=UPI00018510E1 Length = 808 Score = 343 bits (878), Expect = 3e-92, Method: Composition-based stats. Identities = 118/864 (13%), Positives = 244/864 (28%), Gaps = 134/864 (15%) Query: 15 SKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIA-L 73 + +I + H ++V +A+ + ++ + L Sbjct: 5 AHIRESDGEIQTVRNHLVEVKELAE-----------------NMGEKLGVKHIAGLAGML 47 Query: 74 HDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLG 133 HD+GK+ FQ E+ N + +H AG Sbjct: 48 HDVGKYSGEFQNYIIEAVE---------NPENPPKRGSVDHSTAGGKLLY---------- 88 Query: 134 DFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREE 193 D + + + HH ++ + + + Q + + Sbjct: 89 DLLHVTNIRQYTGILAEIVGNVIISHHSYLKDFFNSELESDYLKRVRDKELPQFELTKRI 148 Query: 194 WIS-----------------VLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTT 236 + + L+ + + + ++ AD + T Sbjct: 149 FFNQVISEEEFLAYVEKSSNELKLFLQKDSSKTSEFKFMFLTKMIFSILIDADR--TNTR 206 Query: 237 TNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQL 296 + TY+ + N + Sbjct: 207 LFEENKQYIQQENSLLFSTYYNSLMKKIQAF-----------NSNSHKISPINTLRNELS 255 Query: 297 QVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTR 356 + + G+ + PTG GKT +L YA K +I+ +P Sbjct: 256 EQCDAFAEKSSGIYTLSIPTGGGKTFASLRYALKHAKLYDKKRIIYVVPYTTIIEQNAEE 315 Query: 357 MEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFL 416 + + N++ H N + + + Q+ + K + Sbjct: 316 IRKILQ---DNENILEHHSNVVDDLDDNDEDQDGLMSRSQK----------LKYAKDNWD 362 Query: 417 GQIGVCTIDQVLISVLPVKHRFIRGLG-IGRSVLIVDEVHAYDTYMNGLLEAVLKAQADV 475 I T+ Q L R IR L + SV+I DEV T+ L L D Sbjct: 363 SPIIFTTMVQFLDVFYAKGSRNIRRLHNLCESVIIFDEVQKVPTHCVSLFNNALNFLKDY 422 Query: 476 G-GSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQL 534 G S+IL +AT P + + + +E + + Sbjct: 423 GQSSMILCTATQPALDFVEHKLSINNDAEIIEQ----------------------IDDVV 460 Query: 535 PPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQ 594 + I ++ + + + + + +I N + Y+RLKE + Sbjct: 461 EKFKRTEIIDIATSESFTEDKLSKFIGEQLIKSKNILIILNTKKAVKRLYERLKETHL-N 519 Query: 595 VDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHC 654 V I R+ V + K I ++TQ++E +D+ F+ +I Sbjct: 520 VPIYHLSTSMCAAHRKTILEIVRAQL----KEGKQLICISTQLIEAGVDISFECVIRSLA 575 Query: 655 PADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIE 714 D + Q GR +RH E+ ++ E R + I +++ Sbjct: 576 GLDSIAQAAGRCNRHGE------LEVGRVYVVDYCEENLDRLKEISVGK---QISRKIFV 626 Query: 715 ELN------GASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVL 768 +LN G + A ++ Y D ++ + + +R Sbjct: 627 DLNTDTTSYGGHVLSTKAMARYFQEYYLHFSADLNYYIPKFKKEMTNLLMGERRDNSYRK 686 Query: 769 QWAEEYSLQD-------NDETILAVTRDGEM--SLPLLPYVQTSSGKQLLDGQVYEDLSH 819 + ++++ D + + + + + ++PY Q L+ D Sbjct: 687 AFIHKFNIPDVQLFILNSYGSASEYFKVIDQVTTSVVVPYGQGIDIIAQLNSSNSID-DL 745 Query: 820 EQQYEALALNRVNVPFTWKRSFSE 843 + + +N+ KR E Sbjct: 746 GKIMKIAQQYSLNLFEHDKRKLIE 769 >UniRef50_UPI0001B51C30 hypothetical protein SvirD4_12620 n=1 Tax=Streptomyces viridochromogenes DSM 40736 RepID=UPI0001B51C30 Length = 913 Score = 341 bits (874), Expect = 7e-92, Method: Composition-based stats. Identities = 179/869 (20%), Positives = 288/869 (33%), Gaps = 106/869 (12%) Query: 66 WLLFFIALHDIGKFDIRFQYK---SAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWF 122 ++F ALHD+GK F S L A + Sbjct: 1 MVMFLAALHDLGKGSGCFLRMFGTSRWDGPYLRQARAMWEQQARAAGLPLGENLDAQPGA 60 Query: 123 NQDSLSEQSLGDFFSFF----DAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPA 178 + ++ + A P + GHHG I R M A Sbjct: 61 RHEHITALHMPRLLGCTCEDCGGAGSPSTGLHTAAALLGGHHGDIPSPDT--IGRAAMAA 118 Query: 179 SLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTN 238 +A++ + ++ ++ T L + + P L AG LADW+ S + Sbjct: 119 DIAAWLPIYSELIQDTAELIGVDLTTLPKLVVPERPS-AMVLFAGLVILADWIASDESHF 177 Query: 239 TFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQV 298 T+ +P ++ A + L + + L +PR Q Sbjct: 178 TYRSLTTSP------PQWWHASNMQARAAVTRLRLDAWQPDPAADWTDLFPDTRPRVFQS 231 Query: 299 LVDALPVAPGLT--VIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTR 356 A A G ++E+ TGSGKT AL A L + A+PT+A AN Sbjct: 232 AAMAALPAAGPALVIVESDTGSGKTHLALWCAHHLAVTCGYQGLYMAMPTRAAANQTARE 291 Query: 357 MEASASHLFSSPN---LILAHGNSR----FNHLFQSIKSRAITEQGQEEAWVQCCQWLSQ 409 + A N L + H + + L + ++RA E ++ Sbjct: 292 IAAFMDRALGEQNTANLAVVHATAEATDFVHQLLDAGRTRAQAALDGLEDFISTPSPDDP 351 Query: 410 SNKKV------------FLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAY 457 ++ + V T+DQV ++ P H +R G+ LI+DE HAY Sbjct: 352 LQRRAVLSPWYLRRCLGLIAPFAVGTVDQVALAAQPSHHWMLRMFGLAAKTLIIDEAHAY 411 Query: 458 DTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTY--GLHTDPVENNSAYPLIN 515 + + GLLEA + AD G SV++LSATLP + L + G E P+ Sbjct: 412 ELFQQGLLEAAIAWLADAGASVVILSATLPTATQTALTRAWCEGHRVPVTERGQTGPITV 471 Query: 516 WRGVNGAQRFDLLAHPEQLPPRFSIQPEPI-CLADMLPD---LTMLERMIAAANAGAQVC 571 R ++ P + D LPD + R+ A G Sbjct: 472 VDHHGIITRTGRTDDTDRSSHGERTAPAELHTFIDFLPDPGTAALAARLFDEAGKGGITV 531 Query: 572 LICNLVDVAQVCYQRLKELNN----TQVDIDLFHARFTLNDRREKENRVISNFGK----- 622 ++ N V A Y+ + +I L H + R E+ + + G Sbjct: 532 VMRNRVATAVDLYRSAAHCAQTHGWSPSEIVLLHGQNLPRYRLPGEDLLTRHLGPGKDRT 591 Query: 623 --NGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHH--RKYRPAGF 678 N +R +++ATQV EQSLD+DFD + T P D+L QR GR+HRH RP F Sbjct: 592 RRNPERPDRLLVIATQVAEQSLDIDFDRIYTDLAPIDVLIQRRGRVHRHQVNDSSRPEAF 651 Query: 679 EIPVATILLP---------------DGEGYGRHEHIYSNVRVMWRTQQHIEELNGAS--- 720 P TIL+ + G + ++ T + + Sbjct: 652 RRPRMTILIQPGANELPMVEPPNPGEARPQGNPDSHVYPPYLLAATWYALVQRAREDGTV 711 Query: 721 -LFFPDAYRQWLDSIYDDAE-------------------MDEPEWVGNGMDKFESAECEK 760 L P ++ +Y E + F Sbjct: 712 HLITPADTTPLIEEVYGPKPTVAHALGELLDRTSRRLQSEHGKEEGQSLSRAFRPFTRRG 771 Query: 761 RFKARKVLQWAEEYSLQDNDE--TILAVTRDGEMSLPLLPYVQTSSGKQLLDGQ------ 812 R L + + D+D I A++R E + + + +G D Sbjct: 772 RSIPVTDLASGKSHGSGDSDGIVGIRAISRLSEPPIDAILLYKQPNGILSYDRSGQRRAD 831 Query: 813 ----VYEDLSHEQQYEALALNRVNVPFTW 837 + + +Q + L LN ++P W Sbjct: 832 LARHGADSPARRRQQKDLLLNTASLPAHW 860 >UniRef50_C1F2C1 CRISPR-associated helicase Cas3 n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F2C1_ACIC5 Length = 771 Score = 341 bits (874), Expect = 7e-92, Method: Composition-based stats. Identities = 147/891 (16%), Positives = 259/891 (29%), Gaps = 140/891 (15%) Query: 10 YWGKSSKSLTKGN---DIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAW 66 YW S + + L H VAA+A ++ + + Sbjct: 3 YWAHSDANRSPDEEGHRWQPLSEHLAQVAALARELAER------------ATAPASALST 50 Query: 67 LLFFIA-LHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQD 125 L + LHD GK+ FQ + H G Sbjct: 51 LAYAAGMLHDYGKYQECFQRML------------------HGGSSRCPHAIYGAIALRC- 91 Query: 126 SLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQ----DKSRWEMPASLA 181 D + P V A+ HH + + D A Sbjct: 92 -----------FDEDGCGTDRKWAMPAVCAIAAHHAGLKDFSEHECITDPGNPAFAAERE 140 Query: 182 SYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFL 241 A ++ + A + L + LL+ AD L + Sbjct: 141 IAQKLLGAAATDFPEIRSAFSREKSRLEQRSVDMQTRMLLS-CLVDADRLNT-------- 191 Query: 242 FNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVD 301 A + + + R + + L+ + KR + + Q D Sbjct: 192 ----AGRLLVQQELHSEHRLEQMNIYLDRVADAARKRGTAAS----VLNVRAQVQQHCSD 243 Query: 302 ALPVAPGLTVIEAPTGSGKTETALAYAWKLID--QQIADSVIFALPTQATANAMLTRMEA 359 A +PG+ + PTG GKT A+ +A + Q VI +P + Sbjct: 244 AAKQSPGVFSLCVPTGGGKTLGAMRFALEHAAHSQGKLRRVIVVIPYLSIIEQN----AK 299 Query: 360 SASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQI 419 + +F ++ H + L +S + T EE + + + + Sbjct: 300 IYADVFGPEAVLEHHSGA-VTPLMRSERETTSTTCASEEDEISPSVHPRTIETENWDAPV 358 Query: 420 GVCTIDQVLISVLPVKHRFIRG-LGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQAD-VGG 477 V T + S+ + +R I RSV+I+DEV + L +L+ A+ G Sbjct: 359 IVTTSVRFFESLFSNRPSDLRRIHNIARSVIILDEVQTIPRRLLAPLLGMLRELAEEWGC 418 Query: 478 SVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPR 537 SV+L +AT P + + TY S P+I P + Sbjct: 419 SVVLSTATQPAFEARNPRQTY-----LFPFGSIKPII----------------PGETSAA 457 Query: 538 FSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDI 597 + + + + + D E + QV + NL D A + L+ ++ Sbjct: 458 MARTLQRVQIDWEIEDRIRWEELATRLAEQRQVLCVVNLRDHAATVFDGLRTRLPSEEQT 517 Query: 598 DLFH--ARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCP 655 LFH R R + + G + +V+TQ++E +D+ P Sbjct: 518 GLFHLSTRMCAQHRLRVLDEIRHRLG----AGLTCRIVSTQLIEAGVDLSVPIAFRALGP 573 Query: 656 ADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEE 715 D + Q GR+ R AG + P+ E Y ++ TQ ++E Sbjct: 574 LDSIIQVAGRVDREGTASAAAGAPAGKLIVFRPEDERYPGMDY----KAAAAITQGVLDE 629 Query: 716 LNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYS 775 + + Y+ M + ++ + A + Sbjct: 630 FESLQTDHLRSISDYFQRYYESGGTGGRGEHLADMRQRDNPYFAELADA---------FE 680 Query: 776 LQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPF 835 + ++ T GE G LL L V Sbjct: 681 MIES-RTATVFVPYGE-------------GASLLRELADTRQLDRDLLRKLQRYTV---- 722 Query: 836 TWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMTRVIPAN 886 + +R E GL + D W Y+ ++G+ +PA Sbjct: 723 SLQRYEFEAAKSQGLFEIWS--GSDLWTCD----AAQYSAEKGLLPQLPAQ 767 >UniRef50_D2Q5M0 CRISPR-associated helicase Cas3 n=6 Tax=Bifidobacterium RepID=D2Q5M0_9BIFI Length = 847 Score = 340 bits (872), Expect = 1e-91, Method: Composition-based stats. Identities = 132/856 (15%), Positives = 260/856 (30%), Gaps = 88/856 (10%) Query: 34 VAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLK 93 AV + R+ ++ A LHD+GK FQ + Sbjct: 40 TGAV--QTLRDHLHGAGKLARDF---EEEFSAISYTAALLHDLGKASEDFQEYLLSAKGH 94 Query: 94 LNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWV 153 H G + + + Sbjct: 95 ---------------RGSVIHAWQGAFLVDDACALSSEKSAAEQAVQEI-----TREILE 134 Query: 154 EAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPA---GLSI 210 A+ HHG + D D + + + +E + L L A SI Sbjct: 135 LAIAKHHGELPDCLDVDGFSTFFDGLATDRKNEIRFSYQEVKDRISYLDLDIAGNYDKSI 194 Query: 211 NDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLEL 270 D+ G + +D + F++R+ S+ ++ Sbjct: 195 RDVEHFMQKFNMGGITNSDSFYFYLGLFAKYVYSRLIDADRLDAACFEERRTYRSKSIDW 254 Query: 271 SGLVSN--KRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYA 328 S L+ K + H N + + + + G+ + PTG GKT +L +A Sbjct: 255 SSLIDRFEKNIRKFDHTSEINKIRNQISEQCRLEGKRSTGIYRLAVPTGGGKTLASLNFA 314 Query: 329 WKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKS 388 + +I+ +P + + + +L H +S + Sbjct: 315 LHHAIETNKRRIIYVIPYLSITSQTVKVFREILELDEDDTETLLEHYSSAGGRKDDDTFT 374 Query: 389 RAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLG-IGRS 447 +E QEE Q + + + + QI V T+ + L +V+ K +R + S Sbjct: 375 NTQSEFDQEEDDEQNAKR--KLATERWDSQIIVTTMVRFLETVMSSKSGDLRRFHNMADS 432 Query: 448 VLIVDEVHAYDTYMNGLLEAVLKAQAD-VGGSVILLSATLPMKQKQKLLDTYGLHTDPVE 506 ++I DE+ + T L V+ + +G +++L SAT P+ ++ + + Sbjct: 433 IIIFDEIQSLPTNAINLFNEVVSFLSKILGSTIVLCSATQPLLERTSRKNLLLADCPNLI 492 Query: 507 NNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANA 566 ++S + E+L + + D + E + A Sbjct: 493 DDS------------------QEYFEKLRRTCVVAATEMKNCD-----ELAEIIYEKAKE 529 Query: 567 GAQVCLICNLVDVAQVCYQRLKELNNTQ-VDIDLFHARFTLNDRREKENRVISNFGKNGK 625 I NL A++ YQ LK LN I R +K V + Sbjct: 530 NGNCLAIVNLKSEARIIYQCLKTLNGDNHFKIIHLSTSMCGQHRTDKLELVRQL--TSID 587 Query: 626 RNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATI 685 + I ++TQ++E +DV F +I D + Q GR +R+ P V Sbjct: 588 KGKPVICISTQLIEAGVDVSFSCVIRAMAGLDSILQAAGRCNRNGESKSPK----KVYVF 643 Query: 686 LLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEW 745 + D +G I + T++ + E L + ++ ++ + Sbjct: 644 GIKDEKGLSYLPDIKMGKEI---TERMVREHPDEDLLSNEMLLEYYQLFFEGIQSGNDNG 700 Query: 746 V---------GNGMDKFESAECEKRFKARKVLQWAEEY--SLQDNDETILAVTRDG--EM 792 + ++ C + + + V +Y +T+ R + Sbjct: 701 FGIMDYPIPGKQNLYAYDLLSCNRAARGQYVNSSGTQYLKVYAQAFKTVGNRFRVIPNQN 760 Query: 793 SLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEV------VD 846 ++PY + + L + L V++ RS E + Sbjct: 761 HNVVVPYGRVEKHMERLSRGNLRE--QFAALRQLQDYSVSLFDNEYRSLDERGAITLENE 818 Query: 847 EDGLLWLEGKQNLDGW 862 + G+ L + + Sbjct: 819 DFGIYMLNKDYYKEEY 834 >UniRef50_UPI0001A42D32 hypothetical protein PcarcW_06344 n=1 Tax=Pectobacterium carotovorum subsp. carotovorum WPP14 RepID=UPI0001A42D32 Length = 565 Score = 338 bits (867), Expect = 5e-91, Method: Composition-based stats. Identities = 169/593 (28%), Positives = 250/593 (42%), Gaps = 64/593 (10%) Query: 5 KYICHYWGKSSKSLT--KGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQR 62 + YWGK+ ++ +G+D HLL YH LDVAA + N R + Sbjct: 9 RRYFQYWGKAKRAADALEGDDYHLLPYHGLDVAACGYFLLKGNYFQANHVLRELVFGDDD 68 Query: 63 VKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWF 122 V AW +F+A HDIGKF FQ K NP +P + + K H G + + Sbjct: 69 VAAWFAYFLAWHDIGKFARGFQSK------YANPDSPLVQH--SGQSGKDRHDDLGFWLW 120 Query: 123 NQDSLSEQSLGDFFSFFDAAPHP--YESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASL 180 + + F P + W+ VTGHHG E SL Sbjct: 121 T----MRDDIPNLFPLGTKKPTSVVKNTLEIWLNIVTGHHGKP---------AAECKGSL 167 Query: 181 ASYAAQDKQAREEWISVLEALFLT-------PAGLSINDIPPDCSSLLAGFCSLADWLGS 233 A + D A E ++ LE F A + S LAG LADWLGS Sbjct: 168 A-FHRDDYLAVEHYLHDLETCFPDASAFPACFADKGWRNRLKQQSWALAGLTVLADWLGS 226 Query: 234 WTTTNTFLFNEDAPSDINALRTYF-QDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQ 292 + L TY+ + A +V+ + + + L + Sbjct: 227 RQQDFRYCSTP------MPLETYWREHALPTAEKVVSRLPRTPSPVPFHSIQQLFPFIQR 280 Query: 293 PRQLQVLVDAL---PVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQAT 349 P LQ P L ++E TG+GKTE A+ A +L+ QQ A + LPT AT Sbjct: 281 PTPLQQQALEADISADGPQLFILEDVTGAGKTEAAMVLAHRLMAQQKASGIYVGLPTMAT 340 Query: 350 ANAMLTRMEASASHLFS---SPNLILAHGNSRFNHLFQSIKSRAIT------EQGQEEAW 400 ANAM R+ + L+S SP+L+LAHG + F + ++ + A Sbjct: 341 ANAMYLRLAKAYHALYSPEHSPSLMLAHGARHMSSAFMQSLWEGDSQGQAQYDKKENAAS 400 Query: 401 VQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTY 460 C W + S KK L IGV T+DQ L++V+P +++ +R LG+ +LI+DEVHAYD Y Sbjct: 401 KDCNIWFADSRKKALLADIGVGTLDQALMAVMPFRYQSLRVLGLQNKLLILDEVHAYDAY 460 Query: 461 MNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLH----TDPVENNSAYPLINW 516 M+ L+E ++ A GGSVI+L+ATLP+ ++KL + + ++ YP + Sbjct: 461 MSKLIELLIGFHAQQGGSVIILTATLPLNLREKLTWAFAQGIACEAVQLNPDADYPWMTQ 520 Query: 517 RGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQ 569 + L E + + + L +ER+ AA AG Sbjct: 521 LTRECLREARLDTRAE--------VRGEVKIGWLTERLQGIERVKAAVAAGQS 565 >UniRef50_A6TQ84 Metal dependent phosphohydrolase n=2 Tax=Firmicutes RepID=A6TQ84_ALKMQ Length = 743 Score = 338 bits (867), Expect = 5e-91, Method: Composition-based stats. Identities = 139/815 (17%), Positives = 269/815 (33%), Gaps = 158/815 (19%) Query: 66 WLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQD 125 L HD+GK +++FQ K + + HG L + N Sbjct: 41 ILYLACLYHDLGKMNLKFQDKIKGIKKSED---------------EIPHGILSLAFINSK 85 Query: 126 SLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGF-ILHSQDQDKSRWEMPASLASYA 184 L A+ HH + + K E+ + Sbjct: 86 ELK------------DKGFSKSDIKILAHAIAYHHEREFNYDHNDIKEEIELLKGEGIHF 133 Query: 185 AQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSL-LAGFCSLADWLGSWTTTNTFLFN 243 + DK + ++ F D S + + G + D+ S Sbjct: 134 SYDKIEKISVKNLSAKYFSKDRIYQQEDEEMFLSYIKVKGLLNRIDYASSG--------- 184 Query: 244 EDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDAL 303 DI + + +D + + + +LQ + Sbjct: 185 ---DIDIEVKNNFLNNCLRDLMKEWQEKNSNAEW----------------NELQRHMLFH 225 Query: 304 PVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASH 363 + A TG GKTE L + + F LP + NAM R+ Sbjct: 226 KNDN--VIAIAETGMGKTEAGLLWI-------GDNKGFFTLPLKTAINAMYDRIALDMIK 276 Query: 364 LFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCT 423 + L H ++ +L + ++ I E + K + +CT Sbjct: 277 EGYENKIGLLHSDTYSEYLNRDGEAIDIDEY--------------YNKTKQLSLPLTICT 322 Query: 424 IDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLS 483 +DQ+ V + + + + +++DEV Y + L L +GG +L+ Sbjct: 323 LDQIFDFVYRYRGFESKLATLAYAKVVIDEVQMYSADLLAYLIIGLSYITKIGGKFAILT 382 Query: 484 ATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPE 543 ATLP L + P+ I+ Sbjct: 383 ATLPDLVLDLLQE---------------------------EEITFVSPKTFTNNQRIRHS 415 Query: 544 PICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHAR 603 L + L T+L+ +V +ICN V AQ Y+ LK+ + +++LFH+ Sbjct: 416 VKVLNEQLNHNTVLD-----LYNENKVLVICNTVKEAQRMYKLLKDSKKIR-NLNLFHSN 469 Query: 604 FTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRL 663 F DR+EKE +++ + K+ + V TQVVE SLD+DFD LIT+ + LFQR+ Sbjct: 470 FIKKDRKEKEKQILEIGHRESKQ--YGVWVTTQVVEASLDIDFDILITELSDLNGLFQRM 527 Query: 664 GRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFF 723 GR +R R++ G+ V + G G + + ++ ++++ G Sbjct: 528 GRCYR-GREWEKDGYNCYVFDGGAEECSGIGY----VIDEDIFQLSKTALQDVGGE--LK 580 Query: 724 PDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETI 783 + + S+Y + ++ + + E++ N+ + Sbjct: 581 EEKKMNLVQSLYTTENLKATKYYKQIKSNIDY------------VTSIEDHEKSKNE--V 626 Query: 784 LAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSE 843 + R+ S+ ++P ++ + + +++S+ Sbjct: 627 KKIFRNIH-SITVIPREVYEENQEAISEYILI---------------------LSKNYSK 664 Query: 844 VVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEG 878 ++DE+ L K+++ ++ + Y +G Sbjct: 665 LMDEEERRVLRTKKSVIRSRLMEFTMSVPYHRGQG 699 >UniRef50_B1B9K1 Crispr-associated helicase Cas3 domain protein n=2 Tax=Clostridium RepID=B1B9K1_CLOBO Length = 761 Score = 338 bits (865), Expect = 8e-91, Method: Composition-based stats. Identities = 146/835 (17%), Positives = 272/835 (32%), Gaps = 145/835 (17%) Query: 66 WLLFFIALHDIGKFDIRFQYKS-------AESWLKLNPATPSLNGPSTQMCRKFNHGAAG 118 L HD+GK + +FQ K + + HG Sbjct: 43 LLELACLYHDLGKMNTKFQNKLIKKLNKAELKKGSECKELIQELKDNFLEIEEIAHGYLS 102 Query: 119 LYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPA 178 + ++ + ++ +++ HH ++ ++ + + Sbjct: 103 PAFLAEEVAEH--------------YCFDERRILYQSIYFHHYR-EKLKNLEELQKIINE 147 Query: 179 SLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLA------GFCSLADWLG 232 L+ Y + I L F+ I DI D + G + D+ Sbjct: 148 DLSKYIQDFHYKKIGKIEKLNDSFMEYIDRRIPDIEEDSEETIKKYIMTKGLLNKIDYSA 207 Query: 233 SWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQ 292 S + + + L + G++ Sbjct: 208 SADI---------------------------------EVEIKNEDLFEKTSKFLKEGGFK 234 Query: 293 PRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANA 352 P +LQ + +I A TG GKTE AL + + F LP + + NA Sbjct: 235 PNKLQEYMINHQDDN--NIIRASTGIGKTEAALFWI-------GNNKGFFTLPLKVSINA 285 Query: 353 MLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNK 412 + R+ + F L H ++ +L ++ Sbjct: 286 IFDRIIEKIN--FPKEKTGLLHSDTSSEYLKRN---------------NNELNMEQVDRT 328 Query: 413 KVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQ 472 K I VCT+DQ++ + + ++ + S L++DE+ Y + G L LK Sbjct: 329 KQLSLPITVCTLDQLVDFIFKYEGYELKLATLSYSKLVIDEIQMYSPELVGFLIVALKHI 388 Query: 473 ADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPE 532 ++GG +++ATLP Y + +E N P R + E Sbjct: 389 TEMGGKFSIVTATLPPIFL------YFIDKQNIEYNKPDPFYKEVEGKIQLRHRIKVLQE 442 Query: 533 QLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNN 592 + I +V +I N V AQ Y L Sbjct: 443 DINI----------------------EHIKNNYKNKKVLIIVNTVKQAQKLYDVLNNEIK 480 Query: 593 TQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQ 652 + +I L H+RF R KE +++ + K I + TQVVE SLD+DFD L T+ Sbjct: 481 DETNISLLHSRFIKKHRTIKEEQILEL--GDLKNKHCGIWITTQVVEASLDIDFDVLYTE 538 Query: 653 HCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQH 712 L QR+GR++R+ R I V T G + E + + +++ Sbjct: 539 LSDISGLLQRMGRVYRN-RNLVNEDINIFVYTGKDSYPSGISKSERSIIDKDIFELSKKV 597 Query: 713 IEELNG---ASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQ 769 + G + ++ +Y + E+ + + E VL Sbjct: 598 LINYMGHSDSKTIDEKDKMNLVEEVYSVENLKGGEYFKKIKNIIDKME--------DVLA 649 Query: 770 WAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVY-EDLSHEQQYEALAL 828 + + D R+ E S ++P+ K+ ++ +Y S + LA Sbjct: 650 YEYDKKNID--------LRNIE-STDIIPFSVYEECKEEIEQNLYIIKNSEDFNKRLLAK 700 Query: 829 NRVN-VPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSI-VITYTGDEGMTR 881 N++ + + E+ +++ + ++ L+ + I YT ++G+TR Sbjct: 701 NKIRELIVSIPTYEFEIANKNARVIMK----LELSKYTVIPIVKYDYTFEKGLTR 751 >UniRef50_D0GJL0 Metal dependent phosphohydrolase n=1 Tax=Leptotrichia goodfellowii F0264 RepID=D0GJL0_9FUSO Length = 810 Score = 338 bits (865), Expect = 9e-91, Method: Composition-based stats. Identities = 139/795 (17%), Positives = 265/795 (33%), Gaps = 116/795 (14%) Query: 64 KAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFN 123 K LL HD+GK +++FQ + + HG + Sbjct: 40 KRLLLLACIYHDLGKINVKFQK-------------------FQKNLPQIPHGLLSTAFI- 79 Query: 124 QDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMP---ASL 180 D D + AV HH L + + E+ Sbjct: 80 ----------DSSGLIDNSGFEEYEIRILAHAVALHHERNLSEIEVEDLENEIELMNKET 129 Query: 181 ASYAAQDKQAREEWISVLEAL--FLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTN 238 + K EE+ + +I D L F + + S + Sbjct: 130 PDFIKVLKILEEEYNEYINTQGKNEKIKIFNIIDNNIKLEMLSENFYEIGGRMYSEDISM 189 Query: 239 TFLFNEDAPSDINALRTYFQDRQQDASRVL--ELSGLVSNKRCYEGVHALLDNGYQPRQL 296 T + ++ AS L E K + + +L Sbjct: 190 TKQEAMETFKKYIMVKGLLNKIDYAASSGLTVECENNFLEKNMNDFLQNVLKKYDHDNDW 249 Query: 297 QVLVDALPV-APGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLT 355 L + ++ A TG GKTE L + + F LP + N++ Sbjct: 250 NDLQKFMINNRDNNVIVVAQTGFGKTEAGLLWI-------GNNKGFFTLPLRVAINSIYK 302 Query: 356 R-----MEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQS 410 R ++ + + L L H + R +L + + + + + + +++ Sbjct: 303 RIKEQILKDDITKDEFTDKLGLLHSDFRSEYLKRFEEKKDKEIEENDFTEDRLDEYI--G 360 Query: 411 NKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLK 470 K + VCTIDQ+ V ++ + S +++DE+ Y + L +K Sbjct: 361 KTKQLSLPLTVCTIDQIFDFVYRAPGFEMKASILAYSKIVIDEIQMYSPNLVASLIYGIK 420 Query: 471 AQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAH 530 D+GG +++ATLP K L E + + VN R + Sbjct: 421 FITDLGGKFAIMTATLPGIIKTLL-----------EKENVSFVTTSPFVNNKIRHKVK-- 467 Query: 531 PEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKEL 590 + + + I ++ ++CN V ++ Y LKE+ Sbjct: 468 --------------------IENNEINAEFIKGKYKNNKILVVCNTVKKSKEIYDTLKEI 507 Query: 591 NNTQVDIDLFHARFTLNDRREKENRVI-----SNFGKNGKRNVG-------RILVATQVV 638 + +I+L H++F DR EKEN + F K+ I + TQVV Sbjct: 508 GVLEEEINLLHSKFIKKDRSEKENEITKFASPKRFSGEEKKRRKEQNIIEHGIWIGTQVV 567 Query: 639 EQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEH 698 E SLD+DFD LIT+ + LFQR+GR +R G+ + + G + E Sbjct: 568 EASLDIDFDVLITELSDLNGLFQRMGRCYRSRTLKSEDGY---NCFVFTDNCSGISKSER 624 Query: 699 IYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAEC 758 + + ++++ + ++G + + +D +Y + E ++ +K Sbjct: 625 SIIDKDIHEKSRERLLNIDG--ILTEEMKLSMIDEVYSYESLKETQYCQTIEEKL----- 677 Query: 759 EKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLS 818 R + + EY + + E + + RD S+ ++P K+++ + Sbjct: 678 ------RALKFYIVEYEM--SKEKVKEIFRDIH-SIDVIPKSVYEENKEMITENIKILKK 728 Query: 819 HEQQYEALALNRVNV 833 + + + + Sbjct: 729 TYKDCSNIERETLKL 743 >UniRef50_B9M5K0 CRISPR-associated helicase Cas3 n=2 Tax=Deltaproteobacteria RepID=B9M5K0_GEOSF Length = 822 Score = 337 bits (864), Expect = 1e-90, Method: Composition-based stats. Identities = 130/851 (15%), Positives = 250/851 (29%), Gaps = 142/851 (16%) Query: 69 FFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLS 128 LHD+GK+ FQ S K+ P + +M K +H AG + + Sbjct: 47 LMGLLHDLGKYSAAFQSYLQSSEGKIEPDEEEYV-DAGRMKGKIDHSTAGAQYLREQGKK 105 Query: 129 EQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQ-----DQDKSRWEMPASLASY 183 + + + HH ++ D R + P + Sbjct: 106 DSRFWQIAT------------DIMALCIASHHSGLIDCLASDGADVFTKRMQKPGDKTHF 153 Query: 184 AAQDKQARE-----------------EWISVLEALFLTPAGLSINDI-PPDCSSLLAGFC 225 A D+ E E +LE L L I + L Sbjct: 154 AEVDRNLEEQVRNRVQALLTSTQIENEMRRLLERLGKDMPSLEIGQFMLGFLTRFLFSAL 213 Query: 226 SLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHA 285 AD L S + D+ + L+G R E Sbjct: 214 IDADRLNSAERKPANKPDWQPLIDLLE---------------IHLAGFTVRNRIDE---- 254 Query: 286 LLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALP 345 + + + + GL + PTG GKT +L +A + D +I+ +P Sbjct: 255 -----IRADISESCLQSAARGKGLIQLTVPTGGGKTLASLRFALHHAAKHGMDRIIYVVP 309 Query: 346 TQATANAMLTRMEASASHL--FSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQC 403 + + + + L ++ H N EQ E+ + Sbjct: 310 YTSIIDQNARVARSVFAALEKNGRQIVLEHHSNLT-------------PEQDTNESKLLA 356 Query: 404 CQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLG-IGRSVLIVDEVHAYDTYMN 462 W I T Q L ++ R +R L + +V+I DE+ Sbjct: 357 ENWNV---------PIIYTTAVQFLETLFAAGTRGVRRLHQLANAVIIFDEIQTIPIRTI 407 Query: 463 GLLEAVLKAQ-ADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNG 521 L + G +V+ +AT P + + R + Sbjct: 408 HLFNNAINFMVGQCGSTVVFCTATQP-----------------ILDRVDPKKGAARLASD 450 Query: 522 AQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQ 581 A+ + + R I+ + + E + + V +I N A+ Sbjct: 451 AEMMPNVGELFRDLHRARIEDHCKDTGW--TEEAVAETALQELESSGSVLIIVNKKTQAK 508 Query: 582 VCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQS 641 YQRL + + + R ++V + + + I ++TQ++E Sbjct: 509 ALYQRLHDKLDH---VYHLSTSMCPAHRTAILDKVKACLNP--ENPLPVICISTQLIEAG 563 Query: 642 LDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYS 701 +DVDF +I D + Q GR +R+ + +I I+ P EG R I + Sbjct: 564 VDVDFGTVIRYLAGLDSIAQAAGRCNRNGLR------KIGRVLIVNPANEGLDRLPEIRN 617 Query: 702 NVRVMWRTQQHIEELNG------ASLFFPDAYRQWLDSIY-----------DDAEMDEPE 744 V T++ + E L P + ++ D + D ++ Sbjct: 618 AQDV---TKRVLREFKDNPDFFNRDLQSPKSLERYYDYYFFQRAGEMDFPVSDRDIRNMP 674 Query: 745 WVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSS 804 + + S + + A L+ + + + + + + Sbjct: 675 RQRDTLLNLLSKNEDSVQIYLNEHKQAPSLYLRQSFMSAARAFKAIDSPSQGVIVPYGAG 734 Query: 805 GKQLLDGQVYEDLSHEQQYEALALNRVNV-PFTWKRSFS-----EVVDEDGLLWLEGKQN 858 + + D + + VN+ P+ ++ EV G+ L+ + Sbjct: 735 ERIIADLSASGFDDKGRLLKEAQRYSVNLFPYELEKLKEQRRLYEVWSGSGIYCLDERHY 794 Query: 859 LDGWVWQGNSI 869 + + + Sbjct: 795 SEEFGVSMEPV 805 >UniRef50_C5U6V4 CRISPR-associated helicase Cas3 n=3 Tax=Euryarchaeota RepID=C5U6V4_9EURY Length = 741 Score = 337 bits (863), Expect = 1e-90, Method: Composition-based stats. Identities = 152/862 (17%), Positives = 286/862 (33%), Gaps = 156/862 (18%) Query: 26 LLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQY 85 LL H V D F L+ + L + I LHDIGK FQ Sbjct: 14 LLECHVYATLNVMRSLKDN-------FFWVPELTNENFWELLFYAIVLHDIGKCATGFQK 66 Query: 86 KSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHP 145 + H + + + Sbjct: 67 --------------------DPKNWGYRHEVLSTPFV-----------------EFLDYG 89 Query: 146 YESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTP 205 + A+ HH +I + S+ Y + K+ E ++ F Sbjct: 90 EDEKNMIALAILTHHKYID---ELKNSQMLPRLYYGVYKNKIKELLENKGYLINFYFPRI 146 Query: 206 AGLSINDIPPDCSSLLAGFCSLADWLGS--WTTTNTFLFNEDAPSDINALRTYFQDRQQD 263 + F +W N L D F + Sbjct: 147 EDWELRIFRKKLKK----FNLPKNWEEKIGNYNFNELLDWYDENVREKKTELIFLKGLLN 202 Query: 264 ASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTET 323 A L +G S + + R+LQ + + +++APTG GKTE Sbjct: 203 ACDHLASAGEYSILTLPNLKERIFEKISNLRELQEKLLFI---KRNAILKAPTGYGKTEA 259 Query: 324 ALAYA---WKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFN 380 AL ++ + ++ + V + LP + + NAM R+++ + L H +S++ Sbjct: 260 ALLWSYTNLDSVRKRYPNRVFYILPYKVSINAMYERLKSYLPE---GGMVALLHSSSQYY 316 Query: 381 HLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIR 440 + R +T + + + V T Q++ + V + Sbjct: 317 LYVSGYEYRRLT-----------------NLYRKIYSPMKVLTPFQIMKAFFGVGFYEME 359 Query: 441 GLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQAD-VGGSVILLSATLPMKQKQKLLDTYG 499 + +S+LI DE+H Y+ + G++ +L + +++SATLP ++ +T Sbjct: 360 LSELAKSLLIFDEIHVYEPNIIGIILGMLDILVNGYKAKALIMSATLPTFLEELFKETL- 418 Query: 500 LHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLE- 558 A+ R ++ + D++ +L + + Sbjct: 419 ---------------------KAEDVKFEKEDPDEFTRHRVRVVDGNVFDIIQNLELNKN 457 Query: 559 -RMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVI 617 + V ++CN VD A Y+ LK N + + L H RFT DR E V Sbjct: 458 FFIFGEIKLEKPVLIVCNTVDRAIEVYKYLK---NKKFKVLLIHGRFTYGDRERLEKEVR 514 Query: 618 SNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAG 677 N +V+TQV+E SLD+ F+ ++++ P D L QR GR++RH K Sbjct: 515 KNIEHYD------FIVSTQVIEVSLDISFNSILSEPAPLDALIQRFGRVNRHGWKDG--- 565 Query: 678 FEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDD 737 I +L EG R +++Y ++ T + ++E+N L + +LD +Y D Sbjct: 566 -VIKDVYVLT---EGSERDKYVYK-EWMVKNTLKVLQEINE-ELLRESKIQDYLDEVYKD 619 Query: 738 AEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLL 797 + +K + + + + +N+E + + L ++ Sbjct: 620 S------------NKIIKSIMSAKDTTIDIFNSLKPLYSSENEERFYELFQG----LEVI 663 Query: 798 PYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQ 857 P +L+D +++Y + V + + S E + + + K Sbjct: 664 PIKYIGKVNELID---------QRRYIEIYKYMVPLSISKYFSIKEKLGDVFRYEPKLK- 713 Query: 858 NLDGWVWQGNSIVITYTGDEGM 879 + Y + G+ Sbjct: 714 --------SVIASLKYDSELGL 727 >UniRef50_A7AL54 Putative uncharacterized protein n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7AL54_9PORP Length = 750 Score = 336 bits (862), Expect = 2e-90, Method: Composition-based stats. Identities = 131/836 (15%), Positives = 241/836 (28%), Gaps = 147/836 (17%) Query: 16 KSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHD 75 + I + H + A L +F AW HD Sbjct: 21 RVEEDAFRIQTVKEHSVGTA-----------TLSESFASVFG-----AAAWGKQNGWWHD 64 Query: 76 IGKFDI-RFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGD 134 +GK+ FQ + ++ K +H +AG + Sbjct: 65 MGKYTKNSFQPYIRNASG---------MAVEQKVVDKPDHSSAGAILAREKL-------- 107 Query: 135 FFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMP-ASLASYAAQDKQAREE 193 + P + GHH +L ++ + Y K A EE Sbjct: 108 -----------PGYYPPLAYCIAGHHSGLLDWTSSGEANLNRRLSKTDCYQEMLKDAPEE 156 Query: 194 WISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINAL 253 V+ +L DI L + AD+L T F+ E A Sbjct: 157 MQEVVASLDQPLIDDFEKDIHQWIRMLFS-CLVDADYL----DTERFMHPEQAARRGQY- 210 Query: 254 RTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIE 313 D+ L+ V + A N + L PG + Sbjct: 211 ---------DSMETLKDRFDVYMESLTANAPASFINEKRAAILSRCRKMAESLPGFFSLT 261 Query: 314 APTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILA 373 PTG GKT ++A+A + +I +P + A +F + N++ Sbjct: 262 VPTGGGKTLASMAWALLHAVRYKKKRIIIVIPYTSIIVQT----AAVLRDIFGAENVVEH 317 Query: 374 HGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLP 433 H N + + + S + + I V T Q S+ Sbjct: 318 HSNLQQDSNDERSP--------------------SLLATENWDAPIIVTTNVQFFESLYA 357 Query: 434 VKHRFIR-GLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQAD-VGGSVILLSATLPMKQK 491 + R I SV+I+DE + VL++ S++ +ATLP+ Sbjct: 358 CRTSRCRKLHNICNSVVILDEAQMLPVEFLHPILDVLQSLQASFKASILFTTATLPVF-- 415 Query: 492 QKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADML 551 + + T P + + F+ E P Sbjct: 416 -----SGRIGTGPGAFDGLKTPVTEITSVHDNLFEAFKRVELHWPEPGTT---------- 460 Query: 552 PDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRRE 611 T + + + V I N A+ Y+R+ + L +R Sbjct: 461 ---TNFDELADELSGYDCVLCIVNTRKDARELYRRM-------PEGTLHLSRMMC---SA 507 Query: 612 KENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHR 671 VI + K N +++TQ+VE +D+DF + D + Q GR +R + Sbjct: 508 HIMEVIKLIKQKLKDNEPVRVISTQLVEAGVDIDFPVVYRAFAGLDSIIQAAGRCNREGK 567 Query: 672 KYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWL 731 ++ + + + ++ + +G+ LF P+ Q+ Sbjct: 568 LNHVG--KLGQVFVFNLENTLLRGLMG-----KGAAALREILSVSDGSDLFSPECMAQYF 620 Query: 732 DSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGE 791 Y + + + + K AE AE++ L D+ +++ + G+ Sbjct: 621 SLFYSNCNTFDKANIKGLLYK-GFAEM-----HFMFATAAEKFRLIDDKDSVSILVGYGD 674 Query: 792 MSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDE 847 L ++ L V++ K F ++ + Sbjct: 675 --------------GATLLEELKRIGPEFWLLRKLQQYSVSI---RKWDFEQLCKQ 713 >UniRef50_A3DHS2 CRISPR-associated helicase Cas3 n=3 Tax=Clostridium thermocellum RepID=A3DHS2_CLOTH Length = 750 Score = 336 bits (860), Expect = 3e-90, Method: Composition-based stats. Identities = 162/877 (18%), Positives = 296/877 (33%), Gaps = 142/877 (16%) Query: 9 HYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCW----WDQSVVLQNTFCRNEMLSKQRVK 64 Y+ K + + H V A+ + + + + Sbjct: 1 MYFAKPVDNYEGTYEYH--------VKRCAEILEFEIRSKYPAFKRILS-SYGFDVEDFI 51 Query: 65 AWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQ 124 + + HD GK + FQ K + F H + Sbjct: 52 EKMKTAVVFHDFGKLNPYFQEYMKRKIEK----------KKLSGIKHFRHEVLSCLFLMS 101 Query: 125 DSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYA 184 + S+++ + + AV GHH + KS + Sbjct: 102 NEKSKEAYFPYH----------------ILAVLGHHKML---SSDLKSFERERVWQDRWP 142 Query: 185 AQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNE 244 + A + + + + G S ++ L LA L + Sbjct: 143 EISEDAVKHAMEIASEFGIKVDGRSGPQ-GKSANNYLNALLKLALMLYEKDREKLKVVYS 201 Query: 245 DAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALP 304 + ++ L ++ + + Y R+ + Sbjct: 202 VSKGLLHNCDWIASSNLDYNRVCLIGVSANDIEKKLKEKLEKENKKYVRREFHSICANAV 261 Query: 305 VAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHL 364 G V APTGSGKTE AL +A +IF +PT T+N++ R+ Sbjct: 262 ---GDVVAIAPTGSGKTEAALMWALN----SETTKIIFLMPTMVTSNSLYERLSTHY--- 311 Query: 365 FSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTI 424 F + L+H + +S +E+ W ++K F+ + V T+ Sbjct: 312 FPKESCGLSHSGAETYFYKKS----------KEDDTENDYDWSQILHQKAFIPAVMVSTV 361 Query: 425 DQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSA 484 DQVL + + + S +I DE+HAYD Y GL+ V+K GG V+L+SA Sbjct: 362 DQVLSTEFHTGLWNQKEYALVGSSVIFDEIHAYDGYTIGLITGVIKKIKKYGGRVMLMSA 421 Query: 485 TLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEP 544 T+P + LD V ++ Sbjct: 422 TMPKFLRNHFLDLLDSKCLVVAEE------------------------------LMERAS 451 Query: 545 ICLADMLPDLT-MLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHAR 603 A + DL + E+++ + G +V LI N V+ A+ Y+ + D+ H+ Sbjct: 452 NEWAYLDTDLEGIREKVLKEVSEGKKVALIVNDVETAKKEYKY---YSKKGFDVLCLHSE 508 Query: 604 FTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRL 663 FT+ DR+EKE R+ S + N R++++TQV+E SLDV FD + ++ P D L QR Sbjct: 509 FTMKDRQEKEGRLTSK-----EGNPYRLVISTQVIEVSLDVSFDVMFSECAPIDSLVQRA 563 Query: 664 GRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYS-NVRVMWRTQQHIEELNGASLF 722 GR +RH + P +++Y ++ +T + I + +G Sbjct: 564 GRCNRHG------LINFGRFYVFNPSDTAV---KYVYRKQKDILDKTVEVIRKNSGR--L 612 Query: 723 FPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDET 782 ++ +Y+ + + ++ G+D E F + E Sbjct: 613 TEKQIMAMVEEVYEGFNLYDEDY-KLGIDIVRDIEQRYNFFDVNIF-----------QED 660 Query: 783 ILAVTRDGE-MSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSF 841 TR + + +P++P + + E L + Y+ ++L + V + + + Sbjct: 661 ENLSTRKFDVVKVPVIPADEYME--------IVEKLFESKDYKMISLYEIPVSISKFKKY 712 Query: 842 SEVVDEDGLLWLEGKQNLDGWVW-QGNSIVITYTGDE 877 L + K NL + + I Y D+ Sbjct: 713 IR------RLEISNKYNLPIFKIKYSSEYGIDYEEDD 743 >UniRef50_B2V8N4 CRISPR-associated helicase Cas3 n=2 Tax=Sulfurihydrogenibium RepID=B2V8N4_SULSY Length = 729 Score = 335 bits (859), Expect = 4e-90, Method: Composition-based stats. Identities = 152/840 (18%), Positives = 286/840 (34%), Gaps = 148/840 (17%) Query: 43 DQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLN 102 ++ + + L K+ KA + HDIGK FQ K A+ Sbjct: 21 EKLLENFEILKKYIQLDKETEKA-VYLACLFHDIGKASKEFQAKIAKQK----------- 68 Query: 103 GPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGF 162 Q ++ H F + D F AV HH Sbjct: 69 ---PQPKQEIPHNLLSAVIFYFLRKHFKDNIDLFRKIQ-------------YAVAYHHDR 112 Query: 163 ILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLA 222 ++ K L +A + + ++W + I + D S L+ Sbjct: 113 YDTDINKSK------PILEDFAVRVENDLKDW------ILEKLKIYEITQLNIDKSKLID 160 Query: 223 GFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEG 282 G S ++ FL ++ L + D A +E GL+ + + Sbjct: 161 GLRSALEFKKQILRNENFLKDKKTILLKGLL--HRLDHAASADVEVEK-GLIEDYQSIFI 217 Query: 283 VHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIF 342 + + Q L ++ A TG GKTE AL + D + Sbjct: 218 KGLSKKGINKLKDFQKKA--LDYKDKSVILTASTGMGKTEFALNWVA-------GDKAFY 268 Query: 343 ALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQ 402 LP + + N+M R+ S++F N+ + H N+ +L Q + + + G E Sbjct: 269 TLPVRVSVNSMYERI----SNIFGKDNVGILHANTTDFYLNQ---FKNLEDNGIE----- 316 Query: 403 CCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMN 462 + + I V T DQ+ ++ L + S +IVDE Y Sbjct: 317 -VLINQVQSVRQLSMPITVSTADQIFLATLKYSGFEKIYATLTYSKVIVDEPQGYSPDTL 375 Query: 463 GLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGA 522 ++ L+ ++GG L++AT+ K+ L D Sbjct: 376 AVILKGLEEIYNLGGKFCLMTATMHPFIKEYLKDK------------------------- 410 Query: 523 QRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQV 582 E L P F+ + + M++ I G +V ++ N V AQ Sbjct: 411 --------AEILEPVFNPEKKHKIKLVDKTVDEMVDFAIKEYQKGKKVLILTNTVRKAQE 462 Query: 583 CYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSL 642 Y+ L E + L H+ + +REKE ++ + I ++TQ+VE SL Sbjct: 463 VYKAL-ENLKQPIQFHLLHSLYIQKTKREKEMQIQNT-------TEPVIWISTQIVEASL 514 Query: 643 DVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSN 702 D+D+D LIT+ AD L QR+GR++R + P I + G G+ + Sbjct: 515 DIDYDLLITELSTADSLIQRMGRVYRKTGRT-ITPDNQPNIIICTKEPSGKGK----VYD 569 Query: 703 VRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRF 762 ++ T + +E+ + + + ++ + +++D ++ + Sbjct: 570 KEIVDYTLKELEKYDE-KILTEEIKQEIVSTVFDLKRIENTNFYKKF------------- 615 Query: 763 KARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLD---GQVYEDLSH 819 + + + + D+ + + RD M+L ++P V ++ ++ ++ + Sbjct: 616 -DKNIKLLDYGF-MADSKKEAQDIFRDI-MNLSVIPKVIFDKNQEKINTLLEKINQKDKI 672 Query: 820 EQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGM 879 E+ LN V + R + + ++ L+ I Y G Sbjct: 673 ERIKAMQELNDFTVSAQFYRIKNIIPYKEILIS-----------------DIPYDDKLGF 715 >UniRef50_C2HJB0 ATP-dependent helicase n=1 Tax=Finegoldia magna ATCC 53516 RepID=C2HJB0_PEPMA Length = 775 Score = 335 bits (858), Expect = 5e-90, Method: Composition-based stats. Identities = 127/858 (14%), Positives = 282/858 (32%), Gaps = 136/858 (15%) Query: 39 DCWWDQSVVLQNTFCRNEMLSK-----QRVKAWLLFFIALHDIGKFDIRFQYKSAESWLK 93 + ++ + +L + F + L ++ L HD+GK + FQ + Sbjct: 22 ETLYEHTKLLLDNFEILKNLGYLNSNVNDIEEILYLSCLYHDMGKINPVFQERLKNKNKF 81 Query: 94 LNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWV 153 + H + N Sbjct: 82 -------------DKNVEVGHNILSTFLVNSFLD---------------DKSGRKNNLIR 113 Query: 154 EAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDI 213 A+ HH +I + D E DK + ++ E + T +I ++ Sbjct: 114 CAILNHHNYIENFTYLDAEINEELIEKNLLEINDKFLHLDSENIEEMMDETLDFQNIYEM 173 Query: 214 PPDCS----SLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLE 269 ++ G + D+ S Sbjct: 174 KRIQKTYEYIIIKGLLNKCDYAAS------------------------------------ 197 Query: 270 LSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAW 329 + + + +++L Y R +Q VI TG GKTE +L + Sbjct: 198 -AHMKCEIKNDFLLNSLESLNYNWRDIQQFCIE--NRNDNLVIVGSTGLGKTEASLLW-- 252 Query: 330 KLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSR 389 + + + LP + NAM R++ + + + + HG + +L + Sbjct: 253 -----GADNKIFYVLPLRTAINAMYERIKNLVKNDY-DKKVAVLHGQTDSVYLKELNNDF 306 Query: 390 AITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVL 449 ++ + + + N K I V T DQ+ SV + S + Sbjct: 307 SVKNENE-------KFYEYYKNTKKLAMPITVATPDQLFDSVFKYNGYEFKMATFSYSRI 359 Query: 450 IVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNS 509 I+DE+ AY + ++ D+GG + + +ATL K L + ++ Sbjct: 360 IIDEIQAYSPDILAYTIYAIRLINDLGGKIAIFTATLAPFVKDLLTKKSSITSEY--KFK 417 Query: 510 AYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQ 569 + ++ +R + ++L + +E ++ Sbjct: 418 DFECKYHCFLSENKRHSMKIVEKELDSEY------------------VEEILNKRENIRT 459 Query: 570 VCLICNLVDVAQVCYQRLKELNN-TQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNV 628 ++ N + AQ Y +L + ++ +++L H++FT+ DR++KE ++ + + Sbjct: 460 CLIVRNTIKSAQELYNQLNNNLDCSKYEVNLLHSKFTVEDRKQKEVEILKDGNPKNVNDK 519 Query: 629 GRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLP 688 ++ ++TQ+VE SLD+DFD + T+ LFQRLGR++R R I V T + Sbjct: 520 IKVWISTQIVEASLDIDFDIMFTELSELLGLFQRLGRVYRK-RTLESDIPNIYVFTEISE 578 Query: 689 DGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGN 748 + + + + + ++ ++E G + + ++ + ++ +++ Sbjct: 579 KQISSAYNSYGFIDQTLHDLSKTALKE-KGDGIITEEEKMNMINQYFTTEKLRNSDYIKK 637 Query: 749 GMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLL-------PYVQ 801 F + + L D + + M + + Q Sbjct: 638 FNQVFNKIQSLS----------PGKMELSDVKKEFRNIVSFRAMPINIYNSGDIAKLIEQ 687 Query: 802 TSSGKQ---LLDGQV--YEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWLEGK 856 ++ + LDG+ E L + + L+ +NV + + + +++ K Sbjct: 688 INNCYRDMIALDGEQKNAEKLKLIKLQDKLSDKTLNVNISDINPKNFFTAANEKIYITEK 747 Query: 857 QNLDGWVWQGNSIVITYT 874 + + + +V + Sbjct: 748 FYDNEYGLLNDELVDKFD 765 >UniRef50_B8DQ50 CRISPR-associated helicase Cas3 n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DQ50_DESVM Length = 740 Score = 335 bits (858), Expect = 5e-90, Method: Composition-based stats. Identities = 149/878 (16%), Positives = 244/878 (27%), Gaps = 155/878 (17%) Query: 17 SLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDI 76 + +D L H +VA L F + + A L LHD+ Sbjct: 8 ANRPESDWEPLSRHLEEVAD-----------LAAHFASAFGAGEWGLAAGL-----LHDV 51 Query: 77 GKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFF 136 GK FQ S P R +H AG W + Sbjct: 52 GKQSTAFQAYLRASTAGKGP------------GRGPDHSTAGAQWAHGH----------- 88 Query: 137 SFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWIS 196 + + A+ GHH + + R + D AR + Sbjct: 89 -------YNAKLGKLLAYALAGHHAGLPDGIESLAPRLKRAVEPWHSPGDDIAAR---VP 138 Query: 197 VLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTY 256 + L L S+ ++ AD L T F + A L Sbjct: 139 EITGLPLAGRMPSLGFQLMLFVRMVFSCLVDADSL----CTEAFTTPDKAAWRRGYLP-- 192 Query: 257 FQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPT 316 + + R L+ A N + L +A P PGL + PT Sbjct: 193 LSELKVRLDRHLDHLA--------THAPATPVNSLRAGILAACRNAAPNVPGLFSLTVPT 244 Query: 317 GSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGN 376 G GKT ++LA+A VI+A+P + + + ++ H N Sbjct: 245 GGGKTLSSLAFALDHAQAHGLRRVIYAIPYTSIIEQTARVFREALND-TDDQAVLEHHSN 303 Query: 377 SRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKH 436 + + Q + + +++ + + V T Q L S+ + Sbjct: 304 FVPLRADGTPVTPRREGQDDDAGEGRRSVLAAEN----WDAPVVVTTNVQFLESLFAARR 359 Query: 437 RFIR-GLGIGRSVLIVDEVHAYDTY-MNGLLEAVLKAQADVGGSVILLSATLPMKQKQKL 494 R I RSV+I+DE + LEA+ D G SV+L +AT P K++ Sbjct: 360 SPCRKLHNIARSVVILDEAQMLPPEHLLPCLEALRALVLDYGCSVVLCTATQPALGKREG 419 Query: 495 LDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDL 554 D Q ++ +PEQL +++ + A L D Sbjct: 420 FDR----------------------GLEQVREITPNPEQL--ATALRRVEVTDAGTLDDA 455 Query: 555 TMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKEN 614 + R+ QV + N A+ Y+ L Q D A R E Sbjct: 456 QLAARLAGQ----PQVLCVVNTRPHARALYELLA----PQGDAVHLSAAMCPAHRTEVLR 507 Query: 615 RVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYR 674 V + +VATQ+VE +D+DF + D L Q GR +R R Sbjct: 508 GVRQRLL----QGQPCRVVATQLVEAGVDIDFPVVYRAMAGVDSLAQAAGRCNREGNLER 563 Query: 675 PAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSI 734 + P R D + + Sbjct: 564 G------QVYLFTPQDSPPPFVRQAAQAART--------ALRRNPDPLALDTVEAYFREL 609 Query: 735 YDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEE--YSLQDNDETILAVTRDGEM 792 Y + R + +L + L + + R Sbjct: 610 Y--------------------WQKGDRLDSANLLPLMRDSAPRLDFPFPEVAHLFRLIPD 649 Query: 793 SLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLW 852 L + L+ ++ + + V V + V+ Sbjct: 650 DTIPLLIPYDDDARALI-AELPYTPAPARLLRRAQRYTVGV-------YPRVLAALVQAG 701 Query: 853 LEGKQNLDGWVWQGNSIVITYTGDEGMTRVIPA--NPK 888 + V + Y G+ P NP+ Sbjct: 702 AAHLATEECAVLINEDL---YDDRLGLCADNPTYRNPE 736 >UniRef50_A2SRR5 Metal dependent phosphohydrolase n=1 Tax=Methanocorpusculum labreanum Z RepID=A2SRR5_METLZ Length = 834 Score = 334 bits (857), Expect = 8e-90, Method: Composition-based stats. Identities = 122/878 (13%), Positives = 244/878 (27%), Gaps = 154/878 (17%) Query: 67 LLFFIAL-HDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQD 125 L L HD GK FQ + ++ + K NH AG + + Sbjct: 50 LAALCGLLHDTGKAKQEFQEYLKINDPEIR----------KRYRGKINHSTAGAKYIFEK 99 Query: 126 SLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAA 185 + F + + HHG ++ D + Sbjct: 100 YDKSTDNFERF-----------TAQLIALGICSHHGGLIDCIDLEGQDLFFKRINPEKEI 148 Query: 186 QDKQAREEW------ISVLEALFLT-----------------PAGLSINDIPPDCSSLLA 222 +++ + LE LFL +G I + L Sbjct: 149 YFEESIHNFENDCVSQDELETLFLKAVDEVKTFNEKNRSRLGISGDEITFTRGMLARYLL 208 Query: 223 GFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEG 282 AD S F N ++ ++ L+ ++ Sbjct: 209 SCVIDADRFDS----FCFEDNIVTKDTPKIAVEKWEKLAENLDEFLDQKPII-------- 256 Query: 283 VHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIF 342 + + G+ + PTG GKT ++L YA + + + + Sbjct: 257 ---YDIDELRKEISLSCKAFGKKTSGIYRLNVPTGGGKTLSSLRYALAHAAEWNKERIFY 313 Query: 343 ALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQ 402 +P + + + ++ H N + ++ E Sbjct: 314 VIPFTTIIDQNAKVIREALRE---DDLILEHHSN---------LVYEDPLDENDESITGA 361 Query: 403 CCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVK-HRFIRGLGIGRSVLIVDEVHAYDTYM 461 + + + I + T Q+L ++ K R + S++I DEV Sbjct: 362 DEGRNYRLLTERWDSPIILTTTVQMLNTLFLGKAGSIRRMHNLANSIIIFDEVQMIPVKC 421 Query: 462 NGLLEAVLKAQADV-GGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVN 520 + L +++ G ++IL +AT P K D V + Sbjct: 422 LRMFNTALNFLSEICGTTIILCTATQPKLDKVNPPIRLSAPADMVSVDFGKFRRTNVCDE 481 Query: 521 GAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVA 580 L + + E + ++ +I N Sbjct: 482 -------------------------RLQNGYSAPELAEFVEDKLENNEKILVILNTKTAV 516 Query: 581 QVCYQRLKELNN------TQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVA 634 + Y L + + RR + R+ + +N I V+ Sbjct: 517 KNLYAHLSAKKLTDFTTYKDLSLYYLSTNLCPAHRRNRLERIKDDLKI---KNHRMICVS 573 Query: 635 TQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYG 694 TQ++E +D+ FD +I D + Q GR +R+ + I+ E Sbjct: 574 TQLIEAGVDISFDCVIRSAAGIDSIAQAAGRCNRNGD------VQCRDVFIVNSSDEKLS 627 Query: 695 RHEHIYSNVRVMWRTQQH-IEELNGASLFFPDAY--RQWLDSIYDDAEMDEPEWVGNGMD 751 + I + ++ +H + + F + ++ +D+ Y +G + Sbjct: 628 GLKDI----DLGKKSAEHVLSDFAKNPAGFDNDILSQKMIDTYYQKYFTSRDGEMGYPIT 683 Query: 752 KFESAECEKRF---KARKVLQWAEEYSLQDNDETILAVTR-------------------- 788 K ++ + ++ L E S+Q + TR Sbjct: 684 KEMISKKQMDLPLGRSIFELLSVNEKSIQAYNTDQHLQTRQSPYYLCQAFSTAGKFFEVI 743 Query: 789 DGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDED 848 D + ++PY + S + L G + + VN+ + + ED Sbjct: 744 DQNTTTVIVPYDEGSDIIREL-GSKASYTEKLRLLKKAQQYSVNLYGDLE---QLLTKED 799 Query: 849 GLLWLEGKQNLDGWVWQGNSIVITYTGDEGMTRVIPAN 886 D + N+ I+Y + G+ A Sbjct: 800 I------SPIGDTGSYTLNTSSISYDEEYGVISSSDAE 831 >UniRef50_A3DKC0 CRISPR-associated helicase Cas3 n=2 Tax=Clostridium thermocellum RepID=A3DKC0_CLOTH Length = 800 Score = 334 bits (857), Expect = 8e-90, Method: Composition-based stats. Identities = 131/894 (14%), Positives = 282/894 (31%), Gaps = 138/894 (15%) Query: 26 LLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQY 85 LL+ H +V + DC L E S+ ++ + HD+GK FQ Sbjct: 9 LLLDHLKNVFLIGDCI------LMQKKTEFESFSEHDIRQLNKLNLLTHDLGKATSYFQD 62 Query: 86 KSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHP 145 L+ + + + HG + ++ + +F Sbjct: 63 YIRN-----------LDDNTQKNDERKRHGLLSGV-LSFKIVNAVMKNEILAFLSYM--- 107 Query: 146 YESWFPWVEAVTGHHGFILHSQD----QDKSRWEMPASLASYAAQDKQAREEWISVLE-- 199 V+ HHG + + + + DK +E I+ L Sbjct: 108 ---------VVSKHHGELDDFTNFISVISGDEKNKTLLKLQFESIDKGKLQEVITRLGID 158 Query: 200 --------ALFLTPAGLSINDIPPDCSSLLAGFCS--LADWLGSWTTTNTFLFNEDAPSD 249 F + L G L D+L S + L S+ Sbjct: 159 FDILSYTVDEFENDIDYITSRKVRKKVKELMGLEIFLLIDYLFSLLIFSDKLEAIYN-SE 217 Query: 250 INALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGL 309 + + + + + + + + V+ L + + Sbjct: 218 NMNIEEFIEKNTNRPRISSDCVDKFKKSLEIKNIRMAEWRNRAYQDVLGSVENLSLEEKI 277 Query: 310 TVIEAPTGSGKTETALAYAWKLIDQ-----QIADSVIFALPTQATANAMLTRMEASASHL 364 I PTGSGKT TAL A +L ++ +I+ LP + + Sbjct: 278 LSINLPTGSGKTLTALKAALRLKERLIEEKGYNPRIIYVLPFTSIIEQNFDVFQKVLGT- 336 Query: 365 FSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTI 424 + N++L H S+ + + +E +S+ + + +I V T Sbjct: 337 -TESNVLLKHH----------YLSQRVYQWEKEGEIESLSDTVSEHLVESWDSEIVVSTF 385 Query: 425 DQVLISVLPVKHRFIRGLG-IGRSVLIVDEVHAYDTYMNGLLEAVL-KAQADVGGSVILL 482 Q+L S+ ++R ++ I S++I+DEV + L+ + I + Sbjct: 386 VQLLHSIFTNRNRKLKKFHNIVNSIIILDEVQSIPHRYWNLVRETFSAMAKYLNCHFIFM 445 Query: 483 SATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQP 542 +AT+P+ ++ + Y L D + + I + L + Sbjct: 446 TATMPLIFSEENKEIYELVKDKRKYFEEFSRITIDAKRLTDKTTLDEYKTL--------- 496 Query: 543 EPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHA 602 +L+ ++ ++ N + + Y +KE + +I Sbjct: 497 -------------LLDDILRYKKDD--FLIVMNTIRTSIEIYSFIKEELKDEAEIYYLST 541 Query: 603 RFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQR 662 +R ++ ++ +I+V+TQ++E +D+D D + P D + Q Sbjct: 542 NIIPKERLDRIKKIKE-------SKNRKIIVSTQMIEAGVDIDIDRVYRDFGPMDSINQT 594 Query: 663 LGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLF 722 GR +R + + + ++ + +IY NV ++ T++ + G + Sbjct: 595 AGRCNREWGDKKG---LVTLVNLVNENHHSRPYATYIYDNV-LIEETKKALS---GLEMI 647 Query: 723 FPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDET 782 + Y G+ S E +K K L++ E + +D+ Sbjct: 648 EEKEIFHLAEKYY------------VGLKSHGSDESQKLLDCIKELRYREAFECGKDDKN 695 Query: 783 --ILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQ--------QYEALALNRVN 832 + + R ++ + + + + + Q + + + L + ++ Sbjct: 696 SGVFELIRQDFNTVDVFIEIDDDATEVWQEYQSIKKIKDRFERKRKFNQFKKDLYMYVLS 755 Query: 833 VPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMTRVIPAN 886 +P R ++ ++D + TY D G R + + Sbjct: 756 LPEFAVRKQVDIDEKDITFINRE------------MVFNTYDKDTGFMRDLEKD 797 >UniRef50_A8YWF3 Putative uncharacterized protein n=1 Tax=Lactobacillus helveticus DPC 4571 RepID=A8YWF3_LACH4 Length = 844 Score = 334 bits (857), Expect = 8e-90, Method: Composition-based stats. Identities = 127/889 (14%), Positives = 268/889 (30%), Gaps = 130/889 (14%) Query: 12 GKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFI 71 G + K + L H L+ + + L + Sbjct: 7 GHTKKLKNNTIETQSLRDHLLNT-----------QKYAEKYASDLSLE------HVAGLA 49 Query: 72 A-LHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQ 130 LHD+GK+ +FQ ES K + + +H + G + Sbjct: 50 GILHDLGKYQSKFQEYIIESTRKGDQSKK----------GSIDHSSFGAIFLR------D 93 Query: 131 SLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFI-------LHSQDQDKSRWEMPASLASY 183 + + FS + + A+ HH ++ +R E Sbjct: 94 FISENFSEKENYYDFLDFGGILENAIFSHHNYLGLKDYINPDLMSPFLNRIEKFKDDEEK 153 Query: 184 AAQDKQAREEWISVL--EALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFL 241 Q K+ +E + + E F L+ ++ S + + + Sbjct: 154 KRQLKKCKELFYKDVITEEKFTKYFQLAFDEYEAFISKIRNKVTLKTEQI-LNENAKNNK 212 Query: 242 FNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLD------------- 288 L Y DA R + +S + L + Sbjct: 213 QVMLELQAKYFLSEYVYSCLLDADRTDATAFKLSKNPNFSDNTELFEKYYSKLVGKLHKL 272 Query: 289 --------NGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSV 340 N + + A G+ + A TGSGKT T+L + K + Sbjct: 273 NKNDNSKINQLRAEISEECDQAAERPSGIYTLSASTGSGKTLTSLRFGLKHAKLYHKKHI 332 Query: 341 IFALPTQATANAMLTRMEASASHLFSS-PNLILAHGNSRFNHLFQSIKSRAITEQGQEEA 399 I+ LP + + N++ H N +S ++ + ++ Sbjct: 333 IYVLPYITIIEQNSEVIRKFLNDNKDDSQNILEFHSNVSQKVADKSEETTNTLDLTEDS- 391 Query: 400 WVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLG-IGRSVLIVDEVHAYD 458 + I V T+ Q L S+ + R + S++I DEV Sbjct: 392 ---------------WDSPIIVTTMVQFLDSIFASGTKHRRRFHNLCDSIVIFDEVQKVP 436 Query: 459 TYMNGLLEAVLKAQADVGGS-VILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWR 517 + + + G + V+L +AT P ++ K + + + N Sbjct: 437 IKCLDMFNEAVNFLKNFGNTNVLLCTATQPALEEVKQKLDLNIDHEIIPNL--------- 487 Query: 518 GVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLV 577 + Q+F + ++ I L + E + + + I N + Sbjct: 488 -IEHEQQFKRVEFIDKTQNDDGIDLV-------LNSIQAAELIFKKSQNFKSILGIFNTI 539 Query: 578 DVAQVCYQRLKELNN---TQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVA 634 DV + Y LK + Q+ ++ DR+E+ V++ K I ++ Sbjct: 540 DVTKKIYSNLKNKFDSISDQIKLEYLSTNMCPADRKERIKNVLNLV----KEGKRVICIS 595 Query: 635 TQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYG 694 T ++E +D F+ + D L Q GR +R++ + + + P E Sbjct: 596 TPLIEAGVDASFECVFRSLSGLDSLVQAAGRCNRNNELKLGKVYLLN----MDPSEEHIA 651 Query: 695 RHEHIYSNVRVMWRTQQHIEE-LNGASLFFPDAYRQWLDSIYDDAE---------MDEPE 744 + + + + + + E + + +++ + Y ++ Sbjct: 652 KLNEVKTGKDQV---LELLSEGIKADDFLNANVIKKYFEMFYSKLASTMSYPTNGINLEN 708 Query: 745 WVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSS 804 ++ + E A KR A K E+ + ETI + + + + Sbjct: 709 YIDGIKNVHELAYQSKRKDASKF----EKLTQFSGSETIAKYFQVIKNNTKSVLAPYGDK 764 Query: 805 GKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWL 853 G++L+ + + + + + + F+++ +E + L Sbjct: 765 GEKLI-ADLNGNQDINSLIMLVKDAQPYIVNLYDNKFNQLFEEGDIYTL 812 >UniRef50_O66694 Putative uncharacterized protein n=2 Tax=Aquificaceae RepID=O66694_AQUAE Length = 729 Score = 334 bits (855), Expect = 1e-89, Method: Composition-based stats. Identities = 153/892 (17%), Positives = 275/892 (30%), Gaps = 179/892 (20%) Query: 2 EPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTF-CRNEMLSK 60 + + W KS + + H D +L+N F + E Sbjct: 4 NLRELLKKAWAKSDGTTIRE--------HT-------DTLLKNLSILKNLFGEKIEEACP 48 Query: 61 QRVKAWL----LFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGA 116 + + L HD GK FQ K N + + H Sbjct: 49 EDFRELLWKALELSCEYHDYGKLHCFFQKKVGNK-----------NWKVLKGIPEVRHNL 97 Query: 117 AGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEM 176 + + + + L V HH + + + Sbjct: 98 LSPAFVECEDENLKLLVQK-------------------VVLHHHEVPDQFEKAKEVLIKE 138 Query: 177 PASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTT 236 A + + E LE + L ++ +L+ G D S Sbjct: 139 FGFSEGKAKELDKLIGEEERFLERIALKKFKKRNSESLKKFYTLVKGLLLRIDHASSNKH 198 Query: 237 TNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQL 296 + + + ++ Y + G Q +L Sbjct: 199 LSE-MEKGKLENPEKNVKDYLRK-----------------------------KGAQLNEL 228 Query: 297 QVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTR 356 Q V L V+ APTG GKTE + D F LP + +AN + R Sbjct: 229 QNYV--LENREECLVVVAPTGYGKTEAGFIFL--------KDKGFFTLPFRVSANGIYER 278 Query: 357 MEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFL 416 A N+ L H +S + + E+ + + W + + K F Sbjct: 279 ARAVF-----GENVGLLHSSSLIELMKK--------EEDELDTNTFEGIWKNYQHSKSFA 325 Query: 417 GQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVG 476 + VCT DQ++ V + S +++DE+ Y Y + L+ D G Sbjct: 326 YPLTVCTPDQIMPFVFKFSGYEKYLALLSYSRIVIDELQVYAPYTMAFIVKALEVIKDFG 385 Query: 477 GSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPP 536 ++++AT P ++ F+ + P + P Sbjct: 386 SKFMVMTATFPEFLRRF-------------------------------FEKMEIPFKEFP 414 Query: 537 RFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVD 596 + L D L + + + + + G V +I N V AQ L Sbjct: 415 ELKPRHNVKLLEDTLGSESSINLIRSLSEEGK-VLVIVNTVRKAQELSLLLNAP------ 467 Query: 597 IDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPA 656 + H+RF R +KE + F + V TQ+ E SLD+D D+L+T+ Sbjct: 468 --VLHSRFLQKHRAKKEEEIKEFFS----SGEKGVWVTTQLAEVSLDLDADFLVTELSTI 521 Query: 657 DLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEEL 716 D L QR+GR +R K E P + + G G ++ T++ + E Sbjct: 522 DSLIQRMGRCNRKGIKD----IENPNVYVFTQEPSGKGS----VYPKELLELTRKALTE- 572 Query: 717 NGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSL 776 ++ D + + ++ + + + ++ E E W SL Sbjct: 573 ---GIWEYDVKERAIKEVFGE-NIKKTKYYDQFKSALEYVE----------GFWRGSISL 618 Query: 777 QDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFT 836 +++ + RD +SL ++PY +L S + LA N + +T Sbjct: 619 KESRHDAVQKFRDI-LSLNVIPYQFREE---VLKVYKKWRESSDILERVLAFNELQ-SYT 673 Query: 837 WKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMTRVIPANPK 888 + +SE + +G + + W I Y + G +P+ Sbjct: 674 FSYPYSEKLLREGKIKKASELQELNVFW----IKGDYDENLGFRISKEEDPE 721 >UniRef50_A0LDG1 Metal dependent phosphohydrolase n=2 Tax=Proteobacteria RepID=A0LDG1_MAGSM Length = 829 Score = 333 bits (853), Expect = 2e-89, Method: Composition-based stats. Identities = 139/901 (15%), Positives = 269/901 (29%), Gaps = 127/901 (14%) Query: 15 SKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIAL- 73 + + + I + H VAA L +F L + L Sbjct: 7 AHARQGDHTIQTVDAHLYGVAA-----------LARSFAGKVGLP------LTGELMGLL 49 Query: 74 HDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLG 133 HD+GK+ FQ + K++P + + PS + K +H AG L + Sbjct: 50 HDLGKYSAAFQDYIRSNLGKMDPDGDAPSAPSAKG--KVDHSTAGAQLLWDHLLEQPKSP 107 Query: 134 DFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREE 193 + + HHG ++ D P A +K ++ Sbjct: 108 TAQRML---------FQIMELCIASHHGGLMDCLTADP---NHPTRNAHRQRMEKDKQQT 155 Query: 194 WISVLEALFLTPAGLSINDI---PPDCSSLLAGFCSLADWLGSWTTTNT-------FLFN 243 + L P I + P S A + SL GS T + FLF+ Sbjct: 156 HLPQLLPHVDAPLHQRIQQLLADPQLLESFTARYKSLC-RAGSPTVVHFRFGLLTRFLFS 214 Query: 244 EDAPSDINALRTYFQDRQQDASRVLELSGLVS-----NKRCYEGVHALLDNGYQPRQLQV 298 +D + + +++D L + + N + Sbjct: 215 SLLDADRLDSAEFEEPKRRDNRLSLGSAQWPALIQRLEAELCSYDRTSAVNAIRHTIADH 274 Query: 299 LVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRME 358 A G + PTG GKT +L +A Q D + + +P + + Sbjct: 275 CQSAANRPRGTYTLTVPTGGGKTLASLRFALHHAQQHKMDHIFYIIPFTTIIDQNAQTIR 334 Query: 359 ASAS-HLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLG 417 H +++L H ++ W ++ + + Sbjct: 335 RILEPHPLPEGSVVLEHHSNLSEERL---------------------TWQNKLASENWDR 373 Query: 418 QIGVCTIDQVLISVLPVKHR-FIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADV- 475 + + T+ Q L ++ R R + SVLI DE+ A L + Sbjct: 374 PVVLTTMVQFLETLFGGGTRGARRMHHLANSVLIFDEIQALPLKCTHLFNNAINFLQQQC 433 Query: 476 GGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLP 535 G +V+L SAT P + +L+ + +QL Sbjct: 434 GATVLLCSATQPHLHCVN--------------------ETKGAIQREANHELMPNAQQLF 473 Query: 536 PRFSIQPEPICLADMLPDLTMLERMIA-AANAGAQVCLICNLVDVAQVCYQRLKELNNTQ 594 L LT + ++ ++ N ++ +Q ++ Sbjct: 474 KDLKRVQVKSHLHAGELSLTAIAQLAQTEQQRAGSCLVVVNTKKQSRALFQLCQKSGVDG 533 Query: 595 VDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHC 654 + + R+ + + ++TQ++E +DVDFD +I Sbjct: 534 --LYHLSTDMCQHHRKTIFKEIRQRL----DTQQPTLCISTQLIEAGVDVDFDGVIRFAA 587 Query: 655 PADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIE 714 D + Q GR +RH ++ + E R + I + + R + ++ Sbjct: 588 GLDSIAQAAGRCNRHGKRPMGTLH----VVMPTQAQENLSRLKEIETAKKDFQRMDKEMQ 643 Query: 715 ELN---GASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDK---FESAECEKRFKARKVL 768 L A ++ Y E++ +D+ + Sbjct: 644 NDPADLEHDLLTLKAMERYYTYKYGHYNNSMYEYLSYIIDRRQVGRDDTLLSILSDHEKA 703 Query: 769 QWAEEYSLQDNDETILA----------VTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLS 818 E + QD+ +T+L D L+P+ + S Q L G + Sbjct: 704 NIKGEATHQDDKKTVLRQAFKQAGQIFQAIDAPTRSLLVPHAEGRSIIQQLCGWEGDYRE 763 Query: 819 HEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEG 878 ++ VN+ + ++ ++ E + + D +W + Y+ D G Sbjct: 764 LKKWLRQAQPYTVNL---YPYTWDLLLKERSIAQTQE----DSGIWYLINDAY-YSDDFG 815 Query: 879 M 879 + Sbjct: 816 L 816 >UniRef50_A5V1C0 CRISPR-associated helicase, Cas3 family n=1 Tax=Roseiflexus sp. RS-1 RepID=A5V1C0_ROSS1 Length = 904 Score = 332 bits (851), Expect = 3e-89, Method: Composition-based stats. Identities = 124/899 (13%), Positives = 254/899 (28%), Gaps = 134/899 (14%) Query: 15 SKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIAL- 73 + + L+ H A L F L + L + L Sbjct: 90 AHRRERDGKEQSLVDHLKGTAE-----------LAKRFAGKIGLPE------LGEVMGLA 132 Query: 74 HDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLG 133 HD GK FQ + NP ++ K +H AG + G Sbjct: 133 HDFGKASKEFQDYLKSATGLKNPDEDDYIDYESRKG-KIDHSTAGAQLVYEKCSHLGKEG 191 Query: 134 DFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQD-------------------QDKSRW 174 +F A+ HH ++ ++R Sbjct: 192 EFL------------AQFLALAIASHHSGLIDCLTPTGEDNFSRRITKDDSVTHVSEARG 239 Query: 175 EMPASLASYAAQDK-QAREEWISVLEALFLT-PAGLSINDIPPDCSSLLAGFCSLADWLG 232 ++P ++++ L++L + +I + L AD L Sbjct: 240 KLPEIEDGLNKTLTLDILKQFMQKLQSLREQNDSKETIAFKLGILARFLLSCLLDADRL- 298 Query: 233 SWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQ 292 T F F E++ + + + + + EG A + Sbjct: 299 ---NTADFEFPENSVIRSYGNYVSWDMLIERLEKTFNEFA-QAVAQTKEGSQAREVYQLR 354 Query: 293 PRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANA 352 + + +A G+ + PTG GKT +L +A D V + P + Sbjct: 355 SQVARACREAATKPKGIYQLTVPTGGGKTLASLRFALHHAKHHGMDRVFYVAPYITIIDQ 414 Query: 353 MLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNK 412 + ++L H ++ + + E Sbjct: 415 NADTLRTILEPESERGRVVLEHHSNFVPEEDTHRRHSLLAEN------------------ 456 Query: 413 KVFLGQIGVCTIDQVLISVLPVKHRFIRGLG-IGRSVLIVDEVHAYDTYMNGLLEAVLKA 471 + I T Q L ++ R R + + ++V+I+DEV + +L L+ Sbjct: 457 --WDAPIVCTTQVQFLEALFGAGTRDTRRMHQLAKAVIILDEVQTVPIRIVHMLNVALRF 514 Query: 472 QAD-VGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAH 530 A G +V+L +AT P + P +R + Q ++ + Sbjct: 515 LAHSCGSTVVLCTATQPPLDR-------------------LPDNPYRSLIVKQEQRIILN 555 Query: 531 PEQLPPRF-SIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKE 589 +L ++ + + +++ A ++ V ++ N +A+ Y+++K Sbjct: 556 EVELFKSMQRVEVHYARKDGGMTNDEIVDLAGRALDSEGSVLIVVNTRAMARTLYEQIK- 614 Query: 590 LNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWL 649 R + N + I V+TQ++E +D+DF + Sbjct: 615 -VRRLAPTYHLSTNMCPAHRMDVLNTIKEKLA----AKEPVICVSTQLIEAGVDIDFGAV 669 Query: 650 ITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWR- 708 I D + Q GR +RH + P I+ P E + I R Sbjct: 670 IRSLAGLDSVAQSAGRCNRHGLRATPG-----KVWIVNPQEEDIDQLLDIKIGRDQAQRV 724 Query: 709 -----------TQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAE 757 + I +L + + + + + + E + Sbjct: 725 LSEFKSGNDFIGLEAITTYYRYYYSSRKDEMDYL--VRSSSAVGRDDTLFRLLSTNELSV 782 Query: 758 CEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDG--QVYE 815 R S Q + ++ ++ GK +++ E Sbjct: 783 ASYRSSRGVNPPLLLNQSFQSAAREFCVI---DSPTIGVI-VPYGDEGKTIINALCSASE 838 Query: 816 DLSHEQQYEALALNRVNVPFTWKRSFSEV----VDEDGLLWLEGKQNLDGWVWQGNSIV 870 + + V + + V G+ +L+ + + W + + Sbjct: 839 LDNRVKFLRQAQRFSVCLFRRQFEELNRVGAILETNSGIHYLDERYYSKEFGWSHDPVN 897 >UniRef50_A3J8H8 CRISPR-associated helicase Cas3 n=1 Tax=Marinobacter sp. ELB17 RepID=A3J8H8_9ALTE Length = 762 Score = 332 bits (851), Expect = 4e-89, Method: Composition-based stats. Identities = 118/857 (13%), Positives = 229/857 (26%), Gaps = 129/857 (15%) Query: 13 KSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIA 72 K + HLL H VA L F F Sbjct: 12 KQDSKGSWSEP-HLLHEHLEKVAE-----------LSARFAEKCQSEG------WGFAAG 53 Query: 73 L-HDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQS 131 L HD+GK+ FQ ++ + H AG Sbjct: 54 LWHDLGKYRSGFQMYIRDASGFERENAHV---EQGAHSPRVTHSTAGAVHAINQ------ 104 Query: 132 LGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAR 191 P + ++GHH + S A + A Sbjct: 105 ------------WPSIPGYILAYLISGHHAGLPDWSGGRGSLEHRLAEATKEYQESLAAG 152 Query: 192 EEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDIN 251 + A P +L AD+L T +++ E Sbjct: 153 VPEQLLTAAQPAVPDVARSLKSIALWMRILFSSLVDADFL----DTESYMSPEKVGKRNQ 208 Query: 252 ALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTV 311 + L + N + + APG+ Sbjct: 209 YPQL----------DELHSLFFEKMSTLQKNAEQTPLNVIRKSIFEACHREAYEAPGIFS 258 Query: 312 IEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLI 371 + PTG GKT +L +A + Q +++A+P + ++ Sbjct: 259 LTVPTGGGKTLASLGFALEHAKQHGKSRIVYAIPFTSIIEQNADVFRGFL----GDTAVL 314 Query: 372 LAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISV 431 H + + ++ SR E + + V T Q+ S+ Sbjct: 315 EHHSSLDIDQRAENAGSRLAAEN--------------------WDAPLIVTTNVQLFESL 354 Query: 432 LPVKHRFIR-GLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQA-DVGGSVILLSATLPMK 489 + R + S++I+DE + + ++ + G + +L +AT P Sbjct: 355 FASRTSRCRKLHNLVNSIIILDEAQQVPRDFHAPITQAMQQMSDHFGVTWVLCTATQP-- 412 Query: 490 QKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLAD 549 + + A+ G++ P+ + +++ I L Sbjct: 413 -------------ELGQQTDAFDRTLHEGLSNISEI----IPDPIGLAQNLKRVEIELPQ 455 Query: 550 MLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDR 609 + T E + A +I N A+ Y+ L D A R Sbjct: 456 NVDQPTTWESLAWQVANEACALVIVNKRQDAKTVYELL----PDDGDTYHLSANMCAEHR 511 Query: 610 REKENRVISNF-GKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHR 668 + + +++TQ++E +DVDF + D + Q GR +R Sbjct: 512 SVALKEIRQKLIARRNGDTTPLRVISTQLIEAGVDVDFPVVFRAMAGLDSIAQAAGRCNR 571 Query: 669 HHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYR 728 + +P + P+ + T + ++ F P A + Sbjct: 572 EGKMPQPG-----RVVVFQPETLPPPGFLR-----QAAQTTLELLKSGQLDDPFSPAAMQ 621 Query: 729 QWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTR 788 + + + + + + A+++ L D+ + Sbjct: 622 ----AFFTKLNYLGNRDAHGICELLHAKTSPDAPLEIQFREAAKKFRLIDDVGIGVV--- 674 Query: 789 DGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKR---SFSEVV 845 +P P S + + +D S + + L V +P + S + Sbjct: 675 -----VPFCPEGHEESPVHIWLAALEKDSSQKWAHRKLQRYSVTLPERLAKQLHSAGALY 729 Query: 846 DEDGLLWLEGKQNLDGW 862 + G +E W Sbjct: 730 ERAGKFVIETSNYHPVW 746 >UniRef50_D1B1G2 CRISPR-associated helicase Cas3 n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B1G2_SULD5 Length = 737 Score = 332 bits (851), Expect = 4e-89, Method: Composition-based stats. Identities = 158/837 (18%), Positives = 263/837 (31%), Gaps = 132/837 (15%) Query: 22 NDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDI 81 L H V V + + + S+Q+++ + F HDIGK + Sbjct: 10 ERYQTLEEHTQWV--VEEALNQIDPQILHKVSTCTGWSEQKIRDLIFFSAYFHDIGKATV 67 Query: 82 RFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDA 141 FQ +K H G D Sbjct: 68 EFQETINN-------------------GKKSYHPLYGASLLLHIK-------------DF 95 Query: 142 APHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEAL 201 V HH D + + Q + + S+ E Sbjct: 96 VYKDIGENNLLFSIVLSHHSLFPKQYDSANYNFT-------FLPQYSVLLKNYSSLYEKT 148 Query: 202 FLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQ 261 F L + F S I L + + Sbjct: 149 FNEVCPYLFEFKEIKRELYQKYVDISEKRLADIQSCFKFRVLYSYVSGILNLADWLASAR 208 Query: 262 QDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKT 321 ++ + K + + R Q + +L ++E PTG GKT Sbjct: 209 FTQTKPTTTFLTLPTKENF----VTHLTFDELRPFQEELSSL---DKSVLVEIPTGEGKT 261 Query: 322 ETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNH 381 E +L +A + Q +I+ LPTQ T+N + R++ F L H ++ Sbjct: 262 EGSLLWAIYNLYNQN-TKIIYTLPTQTTSNKLYDRIQNF----FDKEECGLIHSTAKIFL 316 Query: 382 LFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRG 441 K I + + ++ K F I V TID +L + + I Sbjct: 317 EKAYEKENGIVDDVFQSDFLI---------SKSFNKPITVSTIDSLLKYFINIGRFNIAT 367 Query: 442 LGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLH 501 SV+I+DEVHAYD + G L+ L+ + V L+SA++P + K+ L Sbjct: 368 KNFLNSVIIIDEVHAYDFKLMGFLKRFLELCQEYDVRVCLMSASIPNQLKKLL------- 420 Query: 502 TDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMI 561 YPL+ + + + +++ L LE M+ Sbjct: 421 -----GIDTYPLVTQKDLFAKKANEIIKKEMFLDDD-------------------LESMM 456 Query: 562 AAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFG 621 + V +I N V A Y L+ L D+ L+H+ F DR KE+ + Sbjct: 457 QKFHEKKNVLIIRNTVKSAFQIYNELQTLGIKSDDMILYHSTFKKRDRATKEDLIFEKLN 516 Query: 622 KNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIP 681 IL+ATQ+VE SLD+DFD + T + P D L QR GR++R R Sbjct: 517 ----SKKPFILIATQIVEISLDIDFDVMFTDNAPIDALIQRFGRVNRKKSIERKGE---- 568 Query: 682 VATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMD 741 I + + Y+N ++ T Q I+ + Y +WL+ +YD D Sbjct: 569 ---IFIYQNKNIRP----YTNESLLDLTFQTIQN----GYYELGQYVEWLNIVYDKLFED 617 Query: 742 EPEWVGNGMDKFES---------------AECEKRFKARKVLQWAEEYSLQDNDETILAV 786 + + + F+ + + R + Q +Y L D+ Sbjct: 618 DTQLKNVKIRLFDPACLKYDATIKQLHGIEKSSDNYDLRDIEQPKNDYLLYDDYMNEEIK 677 Query: 787 TRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSE 843 +D LP K+ + + E+ Y + + Sbjct: 678 AKDYFEYSISLPLYYEGKNKENIHP-----IDDEKLYYKVLKLDYTLDEGITLDVDN 729 >UniRef50_D2MAH9 CRISPR-associated helicase Cas3 n=1 Tax=Rhodopseudomonas palustris DX-1 RepID=D2MAH9_RHOPA Length = 772 Score = 332 bits (850), Expect = 5e-89, Method: Composition-based stats. Identities = 125/795 (15%), Positives = 225/795 (28%), Gaps = 125/795 (15%) Query: 14 SSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIA- 72 + + T +D L H +VA L F Sbjct: 4 AHSTPTSEDDWEPLPRHLHEVA-----------KLARQFGAKFGGGN------AAEIAGR 46 Query: 73 LHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSL 132 LHD+GK+ FQ+ R +H AG + Sbjct: 47 LHDLGKYSAAFQHYLRGQRP-----------------RGVDHATAGAQEVVKL------- 82 Query: 133 GDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDK-QAR 191 + GHHG + + S+ + + Sbjct: 83 --------GTGINGLIARLLACGIAGHHGGLPDPLGAGSLDDRLKKSVEPLDPIWRSEVA 134 Query: 192 EEWISVLEALF------LTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNED 245 E ++ A F P +L AD+L + + E Sbjct: 135 CEASPLMPAPFELYKGAQQPGPPRQAFQFAFLGRMLFSCLVDADFLCTEA---FYAAVEG 191 Query: 246 APSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPV 305 P D + R L + N + L + + Sbjct: 192 RPVDRDWP------RLPQIVDGLIARFDGYMADKQQRARHGQLNTLRRDILAHVRSKAEL 245 Query: 306 APGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLF 365 G+ + PTG GKT +LA+A + D +I+A+P A Sbjct: 246 PRGVFTLNVPTGGGKTLASLAFALNHAKRHQMDRIIYAIPFTAIIEQT----AGVFRDAI 301 Query: 366 SSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTID 425 L+ H + L + + + + + V T Sbjct: 302 GDETLLEHHSAIELDALDIKADNGEARGIDDG-----ARDGKLRLAAENWAAPVIVTTNV 356 Query: 426 QVLISVLPVKHRFIR-GLGIGRSVLIVDEVHAYDTY-MNGLLEAVLKAQADVGGSVILLS 483 Q+ S+ + R + +V+++DE + + A+ + + G +V+L + Sbjct: 357 QLFESLFANRTSRCRKLHNLANAVIVLDEAQTIPRNVLLPCIAALDELARNYGCTVVLCT 416 Query: 484 ATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPE 543 AT P + L D +L +PEQL +++ Sbjct: 417 ATQPALGADRFTGGLQLSPD---------------------SELAPNPEQL--HTALRRT 453 Query: 544 PICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHAR 603 LA D +L+ + + AQ +I N A+ Y+ K + R Sbjct: 454 TQRLAGEWSDDQLLDDIAQ--SGSAQALVIVNSRRHARALYEAGKRRAVEG--LLHLTTR 509 Query: 604 FTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRL 663 DRR + + +++AT +VE +D+DF + D L Q Sbjct: 510 QIPADRRAILAEIRQRLA----NDAPCVVIATSLVEAGVDLDFPRVWRAEAGLDQLAQAA 565 Query: 664 GRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFF 723 GR +R R ++ + TI P ++ T + +E G LF Sbjct: 566 GRCNREGRAP----ADVSIVTIFKPAAAEPP-----PEIHGLVGDTYRILENHEG-DLFS 615 Query: 724 PDAYRQWLDSIY-------DDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSL 776 P+A + + +Y D + + + + E + L Sbjct: 616 PEAMEAYFNEVYWRLQDGLDRIHIPDADGRKVPAKTMDQFTVSAGQPHFAYRTVGEAFRL 675 Query: 777 QDNDETILAVTRDGE 791 ++ + V D E Sbjct: 676 IESGMAPVIVPTDAE 690 >UniRef50_C9R3Z8 CRISPR-associated helicase Cas3 n=4 Tax=Proteobacteria RepID=C9R3Z8_AGGAD Length = 768 Score = 331 bits (849), Expect = 5e-89, Method: Composition-based stats. Identities = 129/828 (15%), Positives = 238/828 (28%), Gaps = 133/828 (16%) Query: 12 GKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFI 71 + + H L H VA +A + + L F L Sbjct: 6 AHARQDSKW--HFHPLQNHLKKVAKLARRFAGRYGAL---FAEYAGL------------- 47 Query: 72 ALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQS 131 LHD+GKF FQ + S++ K H AG + Q+ Sbjct: 48 -LHDLGKFQEAFQEYIRRVTGFERENAHLEDIESSKP-HKIPHSTAGAKYATQNL----- 100 Query: 132 LGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAR 191 + GHH + D+ ++ + + A A Sbjct: 101 -------------DPFLGHLLAYLIAGHHAGLADWYDKGSLKYRLAQADDELAE--SLAG 145 Query: 192 EEWISVLEALFLTPAGLSINDIPP------------DCSSLLAGFCSLADWLGSWTTTNT 239 E ++E D+ L AD+L + N Sbjct: 146 LEKSGLVEDFLSLSGDALEEDLLNVWESGINLEELHIWMRFLFSCLVDADFLDTEAFMNG 205 Query: 240 FLFNEDAP-SDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQV 298 F+ + A + +D + + S+K + N + L Sbjct: 206 FVDADAAQQAGFRPNFPDLEDMHSRYEKHMLDLAEKSDKHS-------VLNQERSAILAQ 258 Query: 299 LVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRME 358 A L + PTG GKT +L +A K + +I+A+P + Sbjct: 259 CFSAAESDRTLFSLTVPTGGGKTLASLGFALKHALKFGKKRIIYAIPFTSIIEQNADVFR 318 Query: 359 ASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQ 418 + ++ H N ++ K+R E + Sbjct: 319 KAL----GDDAVLEHHSNLEVKEDKETAKTRLAAEN--------------------WDAP 354 Query: 419 IGVCTIDQVLISVLPVKHRFIRG-LGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQA-DVG 476 + V T Q+ S+ + R I SV+I+DEV + +++ A D G Sbjct: 355 LIVTTNVQLFESLFAARTSRCRKIHNIADSVIILDEVQQLPRDFQKPITDMMRILACDYG 414 Query: 477 GSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPP 536 + +L +AT P K +D +G + +++ Sbjct: 415 VTFVLCTATQPELGKN--IDAFGRTVLEGLPDVR-----------------EIVADKIAL 455 Query: 537 RFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVD 596 ++ I + + + + V + N A+ + L + Sbjct: 456 SERLRRVRIKMPPPNDETQSWQEIADEIAERPCVLAVVNTRKHARRLFAAL----PSNGI 511 Query: 597 IDLFHARFTLNDRREKENRVISNFG--KNGKRNVGRILVATQVVEQSLDVDFDWLITQHC 654 A R E V + G+ +V+TQ++E +D+DF + Sbjct: 512 KLHLSANMCATHRSEVIALVRRYLELYREGRLKKPLWVVSTQLIEAGVDLDFPCVYRAMA 571 Query: 655 PADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIE 714 D + Q GR +R + + A P G T++ ++ Sbjct: 572 GLDSIAQAAGRCNREGKLPDLGEVIVFRAEQGAPSGSLKQGQ----------DITEEMLK 621 Query: 715 ELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEY 774 A P A+ ++ ++D+ + +F + A K AE + Sbjct: 622 AGLLADPLSPLAFAEYFRRFNSKGDLDKHKITELLTAEFSND----NPLAIKFRTAAERF 677 Query: 775 SLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQ 822 L DN L +P +P + + K Q E ++ Sbjct: 678 RLIDNQGVALI--------VPFIPLIHENGDKSPKIVQANELDDFFRR 717 >UniRef50_Q2RL61 CRISPR-associated helicase Cas3, core n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RL61_MOOTA Length = 724 Score = 331 bits (849), Expect = 6e-89, Method: Composition-based stats. Identities = 130/846 (15%), Positives = 238/846 (28%), Gaps = 154/846 (18%) Query: 15 SKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALH 74 + + L+ H VA L F + + L H Sbjct: 6 AHTANSQGKEQSLLDHLEAVAN-----------LTQKFNEPLGVPHIGYRTGL-----WH 49 Query: 75 DIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGD 134 D+GKF FQ R NH +AG + Sbjct: 50 DLGKFHPEFQAYLQG----------------EGGRRGPNHSSAGAMLAS----------- 82 Query: 135 FFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAR--- 191 + + P + GHHG + + K+R + L Y + AR Sbjct: 83 ------------KYFEPLAFVIAGHHGGLPARAEL-KTRLKDKVQLKRYNTALQNARRVI 129 Query: 192 ------EEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNED 245 + L AG+ + LL AD+L + + L Sbjct: 130 PSLEPKQPLDMELPPFLQEGAGVDVASRVELFLRLLFSSLVDADFLDTERHFDPSLTKLR 189 Query: 246 APSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPV 305 ++ + + R+++ SG N + + A + Sbjct: 190 QKE--ASIANLWSLLAANQQRLMDKSG-------------GHVNQIRREIYEHCCRAAEL 234 Query: 306 APGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLF 365 PG + PTG GKT + +A+A + + +I A+P + +F Sbjct: 235 TPGFFSLTVPTGGGKTRSGMAFALLHALRYQKERIIVAIPYTSIIEQT----ADVYRDIF 290 Query: 366 SSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTID 425 + N++ H + + ++ + + + V T Sbjct: 291 GNANVLEHHSAVA---------------PPLDPENPTPEELWARLASENWDATLIVTTTV 335 Query: 426 QVLISVLPVKHRFIR-GLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQAD-VGGSVILLS 483 Q+ S+ + R I SV+I+DEV ++ + VL+ G +VIL S Sbjct: 336 QLFESLFSDRSSSCRKLHNIANSVIILDEVQTLPVHLLEPILDVLQQLVHFYGVTVILCS 395 Query: 484 ATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPE 543 AT P + + + + Y F++ Sbjct: 396 ATQPALETSPFFRGLQGVREIIPDPQKY--------------------------FALLKR 429 Query: 544 PICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHAR 603 + E++ Q + N A + L + Sbjct: 430 VGYQVPAGNEKWSWEQVAGVIRQSRQAMAVVNTKQDALALLEAL-----DDPEALHLSTL 484 Query: 604 FTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRL 663 RR+ V G LVATQVVE +D+DF ++ P D + Q Sbjct: 485 LCGAHRRKVLQEVRRRLG----NGRPCRLVATQVVEAGVDLDFPLVLRAVGPLDRIVQAA 540 Query: 664 GRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFF 723 GR +R + I P+ + + + G L Sbjct: 541 GRCNREGKLQEG------RVIIFNPEEGCLPPGSY----KTGTEIAATLLASVTGVDLHD 590 Query: 724 PDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFK--ARKVLQWAEEYSLQDNDE 781 P YR + +Y +D + E ++F+ ++V+ Y +D Sbjct: 591 PGLYRIYFQRLYQSCTLDAKG-IQASRRSLNYPEVAQKFQMIEQRVVPVIVNYHEGPDDR 649 Query: 782 TI-LAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRS 840 + ++ + L Q ++ L E + + + W Sbjct: 650 RVDELISALRHRGVSRLIMRQLQPYLVNINAYTVNSLQREGVVQEI----FPGLYEWLGG 705 Query: 841 FSEVVD 846 + E+ Sbjct: 706 YDEIRG 711 >UniRef50_B8I204 Metal dependent phosphohydrolase n=1 Tax=Clostridium cellulolyticum H10 RepID=B8I204_CLOCE Length = 728 Score = 329 bits (842), Expect = 3e-88, Method: Composition-based stats. Identities = 127/872 (14%), Positives = 256/872 (29%), Gaps = 173/872 (19%) Query: 20 KGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKF 79 + + H L+ A A F + LHDIGK+ Sbjct: 8 EDGTKQSVKEHLLNTAVKA-----------RDFAHPFNGDD-----YAYTAALLHDIGKY 51 Query: 80 DIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFF 139 FQ + + +K +H AG + + Sbjct: 52 SNEFQNRI------------------LKGGKKCDHSTAGAKEIVKIN------------- 80 Query: 140 DAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLE 199 +S + GHH + + E A + + +E Sbjct: 81 -------KSGRLIAYCIAGHHSGLPNYGSVSDVGIE-GTLNARLNKVAIPRYDRFFDEIE 132 Query: 200 ALFLTP-------AGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINA 252 + L +I I + AD+L T F+ N N Sbjct: 133 TINLPVMPNIKLTKNTNIGFILSFYIRFIYSCLVDADFL----DTEVFMSNNSVDRTANY 188 Query: 253 LRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVI 312 F+ + NK+ + N Y+ + L ++ + L + Sbjct: 189 DFYLFRKKL--------------NKKLSSFKTDTMINRYRKKILDACIEKAKLKRNLFNL 234 Query: 313 EAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLIL 372 PTG GKT ++LA+A + + D +I+ +P + ++F N++ Sbjct: 235 TVPTGGGKTLSSLAFAVNHLIKNSMDRIIYVIPYTSIIEQTARE----FKNIFGEENVLE 290 Query: 373 AHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVL 432 H N F+ SIK++ + + + + V T Q S+ Sbjct: 291 HHSNFDFDDDENSIKNKM------------------RLSSENWDMPFLVTTNVQFFESLF 332 Query: 433 PVKHRFIR-GLGIGRSVLIVDEVHAYD-TYMNGLLEAVLKAQADVGGSVILLSATLPMKQ 490 K R I S++I DEV Y+ +EA+ + + +V++ SAT P Sbjct: 333 SHKSSRCRKLHNIANSIIIFDEVQILPIDYLKPCIEAIKQLVLNFNSTVVMCSATQPPF- 391 Query: 491 KQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADM 550 D +P+E + + N +R ++ H Sbjct: 392 -----DKLFGELEPIEICDNHAEL----YNAFKRTNVKTHGVINSSN------------- 429 Query: 551 LPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRR 610 + N QV I N A + L+E + R+ Sbjct: 430 ---------LAKEMNNIEQVLCIVNTRKHALKIFSMLEEQGS-----YHLSTLMCPVHRK 475 Query: 611 EKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHH 670 E N + + + + +T+++E +DVDF + D + Q GR +R Sbjct: 476 EVINTIKERL----REGLTCRVCSTRLIEAGVDVDFPLVYRAMSGLDSIVQSAGRCNREG 531 Query: 671 RKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQW 730 + + P+ E + ++ T+ + + + P A + Sbjct: 532 KLMAEEKLVYGEVHVFYPEDEFVQHQPEAFKRPTMV--TESIMRNFD--DITSPRAICTY 587 Query: 731 LDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDG 790 + ++ + + E E + + ++ L + Sbjct: 588 FEELF-----EITGDGLDFKKILERLESDVTNFNFSFQDISRDFKLIE------------ 630 Query: 791 EMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEV--VDED 848 + ++P++ + L ++ +L V + +K + + + Sbjct: 631 DTAIPVI--IPYDDKACTLIEKLKYSDYKSGILRSLQGYTVTI---YKNEYDNLFGMGAL 685 Query: 849 GLLWLEGKQNLDGWVWQGNSIVITYTGDEGMT 880 + N D + + +S Y + G+ Sbjct: 686 DFITNGEINNKDIAILKRDSFNHLYDKNTGLK 717 >UniRef50_C9L3W2 CRISPR-associated helicase Cas3 domain protein n=2 Tax=Clostridiales RepID=C9L3W2_RUMHA Length = 793 Score = 329 bits (842), Expect = 3e-88, Method: Composition-based stats. Identities = 148/793 (18%), Positives = 268/793 (33%), Gaps = 149/793 (18%) Query: 27 LIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYK 86 L H D+ A A+ F R + ++ K ++ +HD GK ++ FQ Sbjct: 61 LKEHEKDIVACAE----------RFFVRYDQYFTEKEKRLIIEACRIHDWGKANLLFQA- 109 Query: 87 SAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPY 146 +N + ++ HG + D + S Sbjct: 110 ------VVNEEVKEELSSYNKNKKQIPHGFLSALSISVDEFLQISDC----------FKR 153 Query: 147 ESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPA 206 E + ++ AV HH + + + + S L Sbjct: 154 EDFDMFLTAVYYHHTRNDEWDSAEIKEYAEQYYREHLEKYLGRGKVLIRSSYRNKLLFRN 213 Query: 207 GLSINDIPPDCSSL-----LAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQ 261 + ++P + G + D+ S N Sbjct: 214 NNNCKNLPIKWEKWVLYSTIKGMLNKFDYTVSAGYEN----------------------- 250 Query: 262 QDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKT 321 KR Y R +Q + V+ APTGSGKT Sbjct: 251 -------AEINPDLEKRELIKNVEEALKNYNLRPVQTYMKENVEQN--LVVIAPTGSGKT 301 Query: 322 ETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNH 381 E AL + + + LP + ++NA+ R++ + ++ L H +S + Sbjct: 302 EAALLWL-------NGEKGFYTLPLRVSSNAIYERIKVRYRY----EDVALLHSDSMQVY 350 Query: 382 LFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRG 441 L +S + K+ + +CT+DQ+ V I Sbjct: 351 LKES---------------DDTDTYKKYERAKLLANPLTICTVDQLFKFVYKALGTEIFP 395 Query: 442 LGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLH 501 + S +++DE+ AY + + LK +GG +++AT P + + Sbjct: 396 ATLKYSKIVLDEIQAYSPQVIAAIIYGLKQIVSMGGKFAIITATFPPVLEHFM------- 448 Query: 502 TDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTM-LERM 560 ++ LL FS E + + D M ++ + Sbjct: 449 ---------------------KQHGLLKEENYQFQDFSNSSEWLRHKVDIRDGEMDIDEI 487 Query: 561 IAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNF 620 +V +ICN V AQ Y+ L+E ++ L H+R+ DR + E ++ Sbjct: 488 AEQGLE-KKVLIICNTVSKAQEIYKELEEWTE---EVHLLHSRYIRRDRNQLEKMIMQF- 542 Query: 621 GKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEI 680 + R+V I V TQ+VE SLD+DFD L T+ C AD L QR+GR +R R ++ Sbjct: 543 --SEDRDVAGIWVTTQLVEASLDIDFDILYTEMCTADSLLQRMGRCNRKAR------YQP 594 Query: 681 PVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEM 740 A I++ E + +Y + R+ + + G +L + +++ +Y E+ Sbjct: 595 EEANIIVYANENGVGDKSVYG-KELYSRSLDKLHQYVGKTLSEKEKI-DYINQVYCAEEI 652 Query: 741 DEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYV 800 + + E EK K + L E YS Q+ DE + S+ ++P Sbjct: 653 MDTSYYK---------EIEKYLKHFEELTPLE-YSKQETDEKFRNI-----QSITVVPDS 697 Query: 801 QTSSGKQLLDGQV 813 + + + + Sbjct: 698 IYDENQIIFEKSI 710 >UniRef50_C8VWJ7 CRISPR-associated helicase Cas3 n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VWJ7_DESAS Length = 801 Score = 328 bits (841), Expect = 5e-88, Method: Composition-based stats. Identities = 122/838 (14%), Positives = 251/838 (29%), Gaps = 125/838 (14%) Query: 73 LHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSL 132 LHD+GK +F N + + NH AG Sbjct: 46 LHDMGKGTRKFDAYIRYCAQ---------NPQDKSLKGQVNHSTAGAKLIYDSF------ 90 Query: 133 GDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQD----KSRWEMPASLASYAAQDK 188 + A + AV HHG ++ D + P Y Sbjct: 91 -----YNTADRLQKFTAQLISLAVCSHHGGLIDCLDLRGRDKYTERMKPDEDILYDEALN 145 Query: 189 QAREEWIS--VLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDA 246 R E + L+ LF A I + + L + W + +LF+ Sbjct: 146 YFRSECLETNQLKDLFAKAAE-EIKAVITHINQLNSSAGQC--WFA-YGVLEKYLFSCLI 201 Query: 247 PSDINALRTYFQDRQQDAS----RVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDA 302 +D + +++ + + + + NG + + Sbjct: 202 DADRYDTYLFMENKARKEKVNKYALWAELAGILEAKLSSYPQESKINGLRAEISLACRNF 261 Query: 303 LPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASAS 362 G+ + PTGSGKT ++L YA + D + + +P + ++ Sbjct: 262 ARNGSGVYQLAVPTGSGKTLSSLRYALNHAQECDKDRIFYIIPYTTIIDQNAREIKNILG 321 Query: 363 HLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVC 422 H ++ H N + + + + + + I + Sbjct: 322 H---EEMILEHHSNLIVADDEEEVVNYKL-------------------LTERWDSPIILT 359 Query: 423 TIDQVLISVLPVKHRFIR-GLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVG-GSVI 480 T+ Q L ++ + +R + SV+I DE+ A + + L A V ++I Sbjct: 360 TMVQFLNTLFNGGTQDVRRLHHLANSVIIFDEIQAIPIKCISMFNSALSFLAGVCQATII 419 Query: 481 LLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSI 540 L +AT P+ + ++ + + + + + + R + Sbjct: 420 LCTATQPLLETTEIPLKLSENPNIISD--------------------VYEKFRQFKRVDV 459 Query: 541 QPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELN-----NTQV 595 P+ + + + ++ + + ++ N + A+ + LK N Q Sbjct: 460 IPKLVT--GGYSAAALKDFILDRMDQFNSLLVVLNTKNSAREVFNELKAANQGLPEEKQC 517 Query: 596 DIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCP 655 + R + + G I V+TQ++E +++ F+ L+ Sbjct: 518 QVFHLSTNMCPAHRLKALQAMKEQLG-----CGKVICVSTQLIEAGVNISFECLVRSLAG 572 Query: 656 ADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEE 715 D + Q GR +RH K R I+ + E + I T++ + + Sbjct: 573 LDSIAQAAGRCNRHGEKERGD------VYIVNLEREDVSKLVDIKKGQEC---TERVLRD 623 Query: 716 LN------GASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQ 769 L P A ++ + + + E K Sbjct: 624 FEDNPESFDRDLLSPQAMARYYKYYFYERRTQMNYNLKGDNRGKSLYEVLAGNKEAAEAF 683 Query: 770 WAEEYSLQDND-----ETILAVTRDGEMSLPLL--PYVQTSSGKQLLDGQ-VYEDLSHEQ 821 + D +T + + + + PY + L++G+ +L Sbjct: 684 HSRNGRPADLMLKQAFKTAGQEFQAIDENTTGILAPYEEGRDLITLINGECSLGELKRY- 742 Query: 822 QYEALALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGM 879 + VN+ T +R ++ GL+WL+ K L Y G+ Sbjct: 743 -LKKAQHYSVNLYETDRRKLEQM---KGLVWLKDKTILALREGF-------YDEQMGV 789 >UniRef50_C2MA87 CRISPR-associated helicase Cas3 domain protein n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2MA87_9PORP Length = 772 Score = 328 bits (840), Expect = 7e-88, Method: Composition-based stats. Identities = 107/835 (12%), Positives = 228/835 (27%), Gaps = 123/835 (14%) Query: 12 GKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFI 71 + L+ H VA +A L + + + + Sbjct: 8 AHVRALEDGSYETQPLLDHLHGVAELAQ-------SYAERITDYPELGE------IGYLL 54 Query: 72 AL-HDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQ 130 L HD+GK+ FQ + T + H AG + Sbjct: 55 GLLHDLGKYQEGFQRYIRQQSGL----------DPTLNGWRTPHSPAGARYAYD------ 98 Query: 131 SLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQD-------QDKSRWEMPASLASY 183 A + + HH + + + ++ + + Sbjct: 99 --------LKQAGGSQQLLKILSLCIGAHHRGLYNDSEWRGQVVSSSDTKRAVANLVKGL 150 Query: 184 AAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFN 243 + Q E T + +L AD+L T F+ Sbjct: 151 RPEALQLEELLHKASLDKVATMWDKLDEEDYQLLVRMLFSCLVDADFL----DTERFMSP 206 Query: 244 EDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDAL 303 + + +A + Q R Q + + ++ Q Sbjct: 207 DKSLVRQSAKASLEQMRAQ-----------LEEYVSHFNREGRINEARAAFLDQCRNHGR 255 Query: 304 PVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASH 363 + + PTG+GKT +++ +A + Q + +I+ +P + + Sbjct: 256 TAKRKIYSLTLPTGAGKTVSSMMWALEHAIAQGCERIIYVIPYTSIITQT----AQTFRD 311 Query: 364 LFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCT 423 +F + ++ H + + ++ + + + V T Sbjct: 312 IFGADQVLEHHSDV------------------DAKERPDEALEYTKLMTENWDVPLVVTT 353 Query: 424 IDQVLISVLPVKHRFIR-GLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQAD-VGGSVIL 481 Q S+ + R I SV++ DEV + + + V+++ + Sbjct: 354 NVQFFESLYAHRVSRCRKLHNICNSVVVFDEVQMFPPRLLNPILRVVESLHYTFRVEPLF 413 Query: 482 LSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQ 541 +ATLP+ K L D+ + + + + + + E+ P ++ Sbjct: 414 CTATLPVFDKDILADSKRIGHE------------FFFLEERIQEVVPYDAERFAPFDKVR 461 Query: 542 PEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFH 601 L E + I N A Y L+ + + + Sbjct: 462 YHWDPLRLST------EELAERLGEHESFLCIVNSRKDAARLYAALQAQDKSGEGLIHLS 515 Query: 602 ARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQ 661 R +++ + K +V+T +VE +D+DF + D + Q Sbjct: 516 RRMCSAHIQKRIEEIRHRL----KAGEPVRVVSTPLVEAGVDLDFPVVYRAMAGLDSVMQ 571 Query: 662 RLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASL 721 GR +R R P I T DG + ++ L Sbjct: 572 AAGRCNREGRMAEPGEVYIFRLT----DGTDIPGEMSWAQGA-----LEDLLDRLTEQGA 622 Query: 722 FFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDE 781 ++ + Y+D + + + + + + L++ E Sbjct: 623 PQKAEIERYYQAFYNDVDCFDNKKTKEKDKRVSPLLWDVDDDRCEGLRF--------EYE 674 Query: 782 TILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFT 836 T R E + +GK ++ Q+Y + V + Sbjct: 675 TASENFRYIENQDTPIVIPYGDAGKAIIKKLQSNLPLTRQEYRQMNRLTVGLKRK 729 >UniRef50_B1GZL6 CRISPR-associated protein Cas3 n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GZL6_UNCTG Length = 814 Score = 327 bits (837), Expect = 1e-87, Method: Composition-based stats. Identities = 126/859 (14%), Positives = 248/859 (28%), Gaps = 132/859 (15%) Query: 8 CHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWL 67 ++ SKS N L H +VA ++ SK ++ Sbjct: 8 LLFYAHLSKSKDDKNKRQELNTHLTEVAEMSQK----------------NASKIGMRNIG 51 Query: 68 LFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSL 127 LHD+GK+ +Q ++ +H AG +FN+ Sbjct: 52 YCLGLLHDLGKYSELYQDYLLGERGDIS-------------RGDIDHSTAGAQYFNEFIK 98 Query: 128 SEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQD 187 + + F + HH ++ D Y ++ Sbjct: 99 ASMQDDNKLKNFLS--------EQIELCCVSHHSGLIDMIDIRGKNNFDKRLNKKYYYKE 150 Query: 188 KQAREEWIS--------------------VLEALFLTPAGLSINDIPPDCS-----SLLA 222 + E+ +E + S N+I S L Sbjct: 151 TVSIEDIKKNIEKDVVDKINNIANNNLLYEIEQIKSKIDKNSKNEIYRTFSYGMLARFLL 210 Query: 223 GFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEG 282 AD S ++ D N + + + + + S + R Sbjct: 211 SCLIDADHTNSA-DFERGKKIKNKLVDWNIISEKLEKAIDELNDKNKSSENIKEIRKQIS 269 Query: 283 VHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIA--DSV 340 + G +E PTG GKT + +A ++ + A D + Sbjct: 270 DD-------------CAIAGQTYQKGCYKLEVPTGGGKTLASFRFAVEMAKKCNAGIDRI 316 Query: 341 IFALPTQATANAMLTRMEASASHLFSSP-NLILAHGNSRFNHLFQSIKSRAITEQGQEEA 399 I+ +P + S N++L H ++ + ++G+EE Sbjct: 317 IYCIPFTTIIEQNANTIRKIVEADKSDKGNIVLEHHSNISQTSY---------DKGKEEE 367 Query: 400 WVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLG-IGRSVLIVDEVHAYD 458 + ++ + I T Q+L + + R L + S++I DEV + Sbjct: 368 FNPTELYMQ-----SWDIPIIFTTNVQILEVLFGRRTSDTRKLHQLANSIIIFDEVQSLP 422 Query: 459 TYMNGLLEAVLKAQADV-GGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWR 517 L + D +V+L +AT P LLD ++ + +I R Sbjct: 423 IKCVHLFNNAINYLVDFCNTTVVLCTATQP------LLDNVDPERGCLKLSEKPDIIQNR 476 Query: 518 GVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLV 577 + PE ++ + + N +ICN Sbjct: 477 NCVFDSLKRVEVKPEIKDVDYT-------------SEEIASKAAEFVNDNENCLVICNTT 523 Query: 578 DVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQV 637 A+ ++ +K ++ AR R+ + K K +V+TQV Sbjct: 524 KSAKEIFEIIKGRV--DYEVYHLSARMMPIHRKIVLRAIKRKLNKRKK----IAVVSTQV 577 Query: 638 VEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHE 697 +E +D+DF+ I D + Q GR++R+ G + E G + Sbjct: 578 IEAGIDIDFNCGIRALAGLDSIIQAAGRINRNGTLKTNDGNNKKGKLYVYNFNENLGILD 637 Query: 698 HIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIY--DDAEMDEPEWVGNGMDKFES 755 I + + A L + + D + + D + N + + Sbjct: 638 DIKRGKDT---AKIILRRHPNADLLDNKIIKDYYDDFFYQKEQRKDMQFLICNENTELDL 694 Query: 756 AECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYE 815 +++ + L + + + + + + K + Sbjct: 695 LSENRKYNGKYNLTLNQSF------KEASNNFKVIDNIASPVCIEIKRVRKIIDKINSSF 748 Query: 816 DLSH-EQQYEALALNRVNV 833 D + + L RVN+ Sbjct: 749 DSKERYKLIKKLHKYRVNI 767 >UniRef50_UPI0001C373E8 CRISPR-associated helicase Cas3 n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C373E8 Length = 774 Score = 327 bits (837), Expect = 1e-87, Method: Composition-based stats. Identities = 122/842 (14%), Positives = 260/842 (30%), Gaps = 139/842 (16%) Query: 14 SSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIAL 73 ++ T +I HC + A L +C+ + + L Sbjct: 3 AAHISTDMKREQSVIEHCRNTAE-----------LCAGYCKLFGA--ENIGRLSGL---L 46 Query: 74 HDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLG 133 HDIGK F G S + +H AG + ++ +S Sbjct: 47 HDIGKLCTDFDNYIR--------------GTSGFSRGEVDHSYAGAKYITGNTDKARS-- 90 Query: 134 DFFSFFDAAPHPYESWFPWVEAVTGHHGF-----------------ILHSQDQDKSRWEM 176 + HHG + DQ K Sbjct: 91 -------------GVARLIARVIISHHGIHDWVDENCRDYFHIRIANDKNYDQIKENLSQ 137 Query: 177 PASLASYAAQDKQAREEWISVLEAL-FLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWT 235 S + K+A +E+ ++ + + ++ L+ AD T Sbjct: 138 IISDDEFDEFLKKADDEYRAICQKIKNISKNKTDCAFYLGSLERLIESALVDADR----T 193 Query: 236 TTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQ 295 T +F+ NE+ P + + + + L+ + + + Sbjct: 194 DTASFMDNEEYPEFPGNT-ELWHSMKSNMEKKLDS----------FSDRTDVISKQRKSI 242 Query: 296 LQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLT 355 D + + PTG GKT ++L +A + + + + + P + Sbjct: 243 SDRCADFAKNNVKICRLIVPTGGGKTLSSLRFAIEYCLEHGMEKIFYTAPFMSILEQNSE 302 Query: 356 RMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVF 415 ++ + N I H ++ E++ + + + + Sbjct: 303 EIKG----IAGDDNFIEHHSDALA-----------------EKSDNSEELSAYELHTERW 341 Query: 416 LGQIGVCTIDQVLISVLPVKHRFIRGLG-IGRSVLIVDEVHAYDTYMNGLLEAVLKAQAD 474 + T+ Q+L ++ K +R + +SV+I+DEV + + + + ++ Sbjct: 342 DKPVIATTMVQLLNALFLGKTSSVRRFHRLAKSVIIIDEVQSIPLKCVNMFDLAVNFLSN 401 Query: 475 V-GGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQ 533 + G +++L +AT P V ++ +P++ + F + Sbjct: 402 ICGAAIVLCTATQP-----------------VTDDVRFPMLMDEKESMTGDF---TADFE 441 Query: 534 LPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNT 593 L R I PE + I + + +I N A Y+ +KE Sbjct: 442 LFRRTEIIPE--IDEYGYSYEEAADFCIEKFTSSGDLLVIVNTKSSALKMYELIKEKCGD 499 Query: 594 QVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQH 653 V++ RR+K + + I V TQ++E +D+ F ++ Sbjct: 500 DVEVVHLSTNMCPQHRRDKIEAIRGLLNE----KKPVICVTTQLIEAGVDISFRCVVRSL 555 Query: 654 CPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHI 713 D Q GR +RH + PV I L + E G + I + + TQ+ I Sbjct: 556 AGLDSAVQAAGRCNRHGENKD----KCPVYLIKLKE-EKLGNLKEISTAQDI---TQRII 607 Query: 714 EELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEE 773 + + PD + +YD + D V ++ ++L + Sbjct: 608 DNKKNEDISLPDVVSDYFRELYDIEKNDLSYSVPE--NETLVNYLSLNTNRYEMLPDPKT 665 Query: 774 YSLQDND--ETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRV 831 S ++ +T + + + + + + ++++ + V Sbjct: 666 CSQFESQAFKTAGKLFKVIDENTRDVIVPYNNEAEEIVSRLENGHENISLLLRKAQKYTV 725 Query: 832 NV 833 ++ Sbjct: 726 SI 727 >UniRef50_B2GD19 Putative uncharacterized protein n=1 Tax=Lactobacillus fermentum IFO 3956 RepID=B2GD19_LACF3 Length = 812 Score = 327 bits (837), Expect = 2e-87, Method: Composition-based stats. Identities = 137/889 (15%), Positives = 257/889 (28%), Gaps = 117/889 (13%) Query: 15 SKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALH 74 S ++ D LL H ++ + + LH Sbjct: 5 SHTVEGSTDFQLLREHLINAKN---------------LAEDYGTDID-IPKVTGLAALLH 48 Query: 75 DIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGD 134 D+GK+ + FQ +H + G Y+ Q + + Sbjct: 49 DLGKYRVAFQEYIQNGVGH---------------HGSVDHSSFGAYFI------HQFINE 87 Query: 135 FFSFFDAAPHPYESW--FPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQARE 192 Y +W A+ HH + D + +D + ++ Sbjct: 88 HSQAESEKDRLYLTWFGETIENAIMSHHNSLGLKDFVDAHVNSPFLKRLNKVEEDPELKD 147 Query: 193 EWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADW------LGSWTTT-NTFLFNED 245 E V++ F G D + + L S T++++ Sbjct: 148 ELQRVIQRFFQEVMGEKEISDYFDQAYKEFSLLIDKCFSQDKKTLLSNLFFIETYVYSCV 207 Query: 246 APSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGV---HALLDNGYQPRQLQVLVDA 302 +D T+ D+ + K + N + D Sbjct: 208 LDADRTDTATFSLDQPVKRYDYSAVFEDYYQKLNRQLAGMNSEKEINQLRSAMSDECDDF 267 Query: 303 LPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASA- 361 G+ + PTG GKT + Y K + LP + Sbjct: 268 AEKRDGIYQLSIPTGGGKTLAGMRYGLKRSILSHKKHIFGVLPLITIIEQNARVYRETFN 327 Query: 362 SHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGV 421 + N++ H N K + + I V Sbjct: 328 GDRLDNQNILEFHSNVAQELRSNKEKDDLLDLAED-----------------SWNSPITV 370 Query: 422 CTIDQVLISVLPVKHRFIRGLG-IGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVG-GSV 479 T+ Q L + R + SV+I+DEV L + +VG S+ Sbjct: 371 TTMVQFLNCIFASGTTNRRRFHNLCNSVIILDEVQKVPVKCLSLFNKAINFLKEVGHCSI 430 Query: 480 ILLSATLPMK--QKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPR 537 +L +AT P K L + D + + + + + R Sbjct: 431 LLCTATQPALGDLKASLKIDGEIIQDLSQRQEDFKRVKFTDLT----------------R 474 Query: 538 FSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDI 597 IQ PI + E + N ++ +I N + + L + + Sbjct: 475 QGIQEHPIS------SQELAELITYKFNDSQRILVILNTIGAVNQLAENL-DSGQLNCKV 527 Query: 598 DLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPAD 657 R R++ + + + I V+T ++E +D+ F+ + C D Sbjct: 528 YALTTRMCAAHRQKLIKEIKDRLA----QKLPTICVSTPLIEAGVDISFETVYRSVCGLD 583 Query: 658 LLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELN 717 + Q GR +R+ + R + +L D E + I +++ ++ + Sbjct: 584 SIVQAAGRCNRNGERDRGDVY----LVLLNKDSEKLDKLREIKWGQKIVLNMLAQ-KDFD 638 Query: 718 GASLFFPDAYRQWLDSIYDDAEMDEPEWV---GNGMDKFESAECEKRFKARKVLQWAEEY 774 SL + D Y + + E G D + E + +R LQ Sbjct: 639 PDSLLQTKVINNYFDHFYQEIDQSELSGYPTSDEGRDIHLADYIEGKQASRDYLQQNSGS 698 Query: 775 SL--QDNDETILAVTRDGE-MSLPL-LPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNR 830 L ETI + ++ + +PY + S LL+ Q Y+D S + ++ + Sbjct: 699 ELKAFSGSETIAKHFEVIDQETVSVLVPYGKGSDFIALLNSQNYQD-SLSEIFKEVQPYL 757 Query: 831 VNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGM 879 VNV R E +++ D V+ Y + G+ Sbjct: 758 VNVFKNMLRGLI----EKEVVYPIEFPFSDREVYTVRDS--YYQEESGL 800 >UniRef50_D2L2Z3 Metal dependent phosphohydrolase n=2 Tax=Desulfovibrio RepID=D2L2Z3_9DELT Length = 744 Score = 327 bits (837), Expect = 2e-87, Method: Composition-based stats. Identities = 114/724 (15%), Positives = 212/724 (29%), Gaps = 133/724 (18%) Query: 15 SKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIAL- 73 S+ + L H V A L F + L Sbjct: 15 SREGQPQSAWQGLAAHLHGVGA-----------LARDFADRFGAGE------WGALAGLF 57 Query: 74 HDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLG 133 HD GK+ FQ + A ++ +H +AG Sbjct: 58 HDAGKYTEAFQRRLAG------------------DGQRVDHSSAGARL------------ 87 Query: 134 DFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREE 193 A + GHH + +D D + A+ + + + Sbjct: 88 -------AVDRFKGPGKLLAYCIAGHHAGLPDGRDNDLACLA-ARLKAALVPEPARTLAD 139 Query: 194 WISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINAL 253 EA TPA +L AD+L T FL E Sbjct: 140 SRQAPEAFPFTPALGRTGFQCAFFIRMLYSCLVDADFL----DTEAFLDREKHAHRGGYP 195 Query: 254 RTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIE 313 + ++ + L + + ++ + L + A APGL + Sbjct: 196 --TLETMRERLTAHLAQFAAKAEPSP--------VDPWRAKVLGWCLGAAGDAPGLFSLT 245 Query: 314 APTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILA 373 PTG GKT ++LA+A VI+ +P + ++ ++ Sbjct: 246 VPTGGGKTLSSLAFALNHAITHDRKQVIYVIPYTSIIEQNADVFRSAV----GPEAVVEH 301 Query: 374 HGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLP 433 H N+ + + E +E + + +++ + + V T Q S+ Sbjct: 302 HS----NYDPKRRTDKDAAEPAGDEGLGRRHELAAEN----WDAPLVVTTSVQFFESLFA 353 Query: 434 VKHRFIR-GLGIGRSVLIVDEVHAYDT-YMNGLLEAVLKAQADVGGSVILLSATLPMKQK 491 + R I +SV+I+DE + LEA+ + G +V+L +AT P + Sbjct: 354 HRSSRCRKLHNIAKSVVILDEAQMLPPTLLRPCLEALRELSESYGTTVVLCTATQPALTR 413 Query: 492 QKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADML 551 ++ P E + P + ++ + L Sbjct: 414 REGFAF--GLEPPREIVADVPGLFAA----------------------LKRTRVAHLGKL 449 Query: 552 PDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRRE 611 D + ++ QV + N A+ + L + A R E Sbjct: 450 TD----DELVKRLREHEQVLCVVNTRAHARRLHGLL----GPGAGVFHLSASMCPAHRSE 501 Query: 612 KENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHR 671 K + + K +V+TQ++E +DV F + D + Q GR +R Sbjct: 502 KLAAIRAAL----KAGQPCRVVSTQLIECGVDVSFPAVYRAEAGVDSVAQAAGRCNREGE 557 Query: 672 KYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWL 731 + + + E + + H+ A P+A + Sbjct: 558 LAEG--------VVYVFEAEAAPPAGELRRAAE-----EGHVVLRAFADPLSPEAVAAYF 604 Query: 732 DSIY 735 +++Y Sbjct: 605 EALY 608 >UniRef50_A5UJJ3 Predicted helicase n=1 Tax=Methanobrevibacter smithii ATCC 35061 RepID=A5UJJ3_METS3 Length = 734 Score = 326 bits (835), Expect = 2e-87, Method: Composition-based stats. Identities = 140/778 (17%), Positives = 257/778 (33%), Gaps = 111/778 (14%) Query: 27 LIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYK 86 L+ H + V C + + C L + + HD GK + FQ Sbjct: 11 LMEHTENTLKVFKCIKECYPDVP-KICGVP-----DFWEHLFYILFFHDFGKAAVGFQN- 63 Query: 87 SAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPY 146 ++ + H + P Sbjct: 64 ----------------SLNSNNYWGYRHEILSACFIISL---------------NDIFPE 92 Query: 147 ESWFPWVEAVTGHHGFILHSQ-DQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTP 205 + + HH + + D E + K +E IS L + Sbjct: 93 VTINAIGLTIITHHKDVKKLRKDYQIKNKEAKRVFDEKLFELKPNFDELISYLNLVPKLS 152 Query: 206 AGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDAS 265 + + S+ F ++++ + YF +A Sbjct: 153 EKYLGYKLKTPNNISFEDLRSV---YNQTVLNYFKDFKIGNYNELHGIYGYFLKGFMNAC 209 Query: 266 RVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETAL 325 L + + + QL G + + APTGSGKTE + Sbjct: 210 DYLASGSKYEILSAVKNGDLYTFDSLRKTQL-----IASKTKGSSFLIAPTGSGKTEASF 264 Query: 326 AYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQS 385 +A + + + LP A+ NAM R+ L S + ++HG + + +++S Sbjct: 265 LWADNNQTDNFSKRIFYVLPFTASINAMYNRL---VKDLGSDELVGISHGKASY-FIYKS 320 Query: 386 IKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIG 445 ++S E E + Q+ K + T Q++ VK + + Sbjct: 321 VESGDYDESNFETKRI-------QNLTKKIYRPYKILTPFQLIKFFFGVKGFEMGLSELT 373 Query: 446 RSVLIVDEVHAYDTYMNGLLEAVLKAQA-DVGGSVILLSATLPMKQKQKLLDTYGLHTDP 504 S+LI+DE+HAYD + LL LK + ++SATLP K Sbjct: 374 NSLLILDEIHAYDARVTCLLLESLKILKSKFDVDIFIMSATLPSFLKNLFSKEL------ 427 Query: 505 VENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAA 564 + + L + R + C+ + ++++ Sbjct: 428 ---------------DISNFISLDSKELDSFTRHKVNIINNCIENCC------DKILNDI 466 Query: 565 NAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNG 624 N+G +V ++CN VD AQ Y+ KE + L H+RF L DR E + Sbjct: 467 NSGKKVLIVCNTVDKAQFIYEWFKEKDVDNS--ALLHSRFILKDRERIEKNL-------- 516 Query: 625 KRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVAT 684 + +L+ TQ +E SLD+D+D L ++ P D L QR GR++R K I Sbjct: 517 --DNLNLLIGTQAIEVSLDIDYDVLYSEPAPLDALIQRFGRVNRRGWKDD----IIKQVN 570 Query: 685 ILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPE 744 I G ++IY N ++ +T + + + ++ +D +Y + + + Sbjct: 571 IF---KIGSDNDKYIY-NQNLVNKTLDVLNNFD---ILPESKIQEIIDHVYSEGYDSKNQ 623 Query: 745 WVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQT 802 + + + + + + Y+L D+ E + R E L + + Sbjct: 624 ETFDEVKLSFNRLLKNIVPFINFNKDNDFYNLFDSYEVVPQKFR--EEYLDEINNKRY 679 >UniRef50_B1I4M4 CRISPR-associated helicase Cas3 n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I4M4_DESAP Length = 795 Score = 326 bits (835), Expect = 3e-87, Method: Composition-based stats. Identities = 167/863 (19%), Positives = 286/863 (33%), Gaps = 124/863 (14%) Query: 5 KYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVK 64 H W KS + L+ H V A + L R Sbjct: 6 PDFDHIWAKSRVGKATSGET--LVSHTQRVLANVVALHARMPELDQLSQMP------RFW 57 Query: 65 AWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQ 124 + + LHD+GK FQ + F H + Sbjct: 58 SRMALAAVLHDVGKCAGGFQKMLRGNGEF-----------------PFRHEVLSAAFLPW 100 Query: 125 DSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFI-LHSQDQDKSRWEMPASLASY 183 ++ P++ + HH + +D L+ Sbjct: 101 LLDND---------------PHQDLPWVAAGILSHHKDFSILERDFPPGCDWEEPPLSDS 145 Query: 184 AAQDKQAREEWISVLE---------------------ALFLTPAGLSIND---IPPDCSS 219 Q +E L F+ PA D P Sbjct: 146 LEQVALDLDEEFFHLAPKMVLYGLLPLLKGCLLLASNERFILPASDGTFDRSTFPGFARR 205 Query: 220 LLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRC 279 L + L L ++ + L + A + +++ Sbjct: 206 ALDAYAQLVVRLRKEDARSSAALAGRFTRGVLILADH----AGSAWQAFAKLESLASPAI 261 Query: 280 YEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQ-IAD 338 V L ++ PG V+ APTGSGKTE AL +A Q Sbjct: 262 MARVLDLPPPAKTGDEVYAHQTHASETPGCAVLVAPTGSGKTEAALLWAAANGRQTVGNP 321 Query: 339 SVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEE 398 + + LP QA+ NAM +R+ F ++L H + R + ++G Sbjct: 322 PLFYVLPYQASLNAMRSRL----GERFGDDRVVLQHSRAL------QALYRQLLDRGYTP 371 Query: 399 AWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYD 458 + + ++ + + + T Q+L ++ ++ DE+HAYD Sbjct: 372 GEAKNQAEREINLGRLHVAPVRILTPYQLLRGAFQLRGHEAIWTDCAGGRIVFDEIHAYD 431 Query: 459 TYMNGLLEAVLK-AQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWR 517 G++ A+L+ D+ +V+++SATLP K+ L + T + AY Sbjct: 432 PSRLGMILALLEHMVRDLTVNVLVMSATLPSILKEILNEKLNRPTPIIATTKAYEA---- 487 Query: 518 GVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLV 577 F + AD+L + T+LE + A G V ++ V Sbjct: 488 --------------------FRRHRLCLKAADLLDEETILE-IHQKARRGLAVMVVATTV 526 Query: 578 DVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKN--GKRNVGRILVAT 635 AQ ++ L ++N ++ ++L H +F DR +KE ++ GKR ILVAT Sbjct: 527 QRAQQMWETLNAVSNGEIPVELLHGKFCSRDRFKKEQWLLQQVSTRNAGKRKNPLILVAT 586 Query: 636 QVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGR 695 QVVE SLDVDFD L T P + L QR GR++R + +L +G Sbjct: 587 QVVEVSLDVDFDVLFTDPAPLEALLQRFGRVNR------GRRYRERDVIVLTEIPKGCP- 639 Query: 696 HEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMD-EPEWVGNGMDKFE 754 + ++ + Q + L+G + + LD++Y + D + V + F+ Sbjct: 640 ----VYSKTLIEKALQQLVPLDG-HMVDEAKIQLLLDAVYSGSVSDWWRDEVLKAAEAFK 694 Query: 755 SAECEKRFKARKVLQWAEEY-SLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQV 813 S + + E++ + D E + D + L + T S + + Sbjct: 695 SEVLSNLYAFETDERLEEKFCEMFDGQEVLPMDLCDEYIRLNQEEPLHTQSLLVSVSNRQ 754 Query: 814 YEDLSHEQQYEALALNR--VNVP 834 + L E E + + V VP Sbjct: 755 FWRLRKEHLLEKVDQHLWGVRVP 777 >UniRef50_B0MFZ6 Putative uncharacterized protein n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0MFZ6_9FIRM Length = 755 Score = 326 bits (834), Expect = 3e-87, Method: Composition-based stats. Identities = 139/866 (16%), Positives = 286/866 (33%), Gaps = 154/866 (17%) Query: 28 IYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYKS 87 H D+ A+ WD ++ + + L HD GK + FQ + Sbjct: 15 AEHAQDLIRQAEILWDFHY-----------INDKYIFDLLCQACLHHDDGKANKEFQKRV 63 Query: 88 AESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYE 147 LK NP ++ H +++ + + ++ + YE Sbjct: 64 RNGKLKFNPE------------KEVPHNILSIFYLDPSF-----------YLHSSKYQYE 100 Query: 148 SWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAG 207 + A+ HH + + + R + + L + + E+ E + + P+ Sbjct: 101 DFMRVACAILYHHDYCEEWKVLREKRDLIDSLLLD------EYKHEFDDENELVGIYPSD 154 Query: 208 LSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRV 267 LL G D+ S + + + + Sbjct: 155 PQT--------ILLKGLLHRCDYSASGNYQVEYPND------------FLIKGLDQMMQA 194 Query: 268 LELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAY 327 ++ S +LQ + + APTG GKTE L + Sbjct: 195 WKVKNPKSKW----------------NELQEFCIEHREDDIIAL--APTGMGKTEAGLHW 236 Query: 328 AWKLIDQQIADSVIFALPTQATANAMLTRME-ASASHLFSSPNLILAHGNSRFNHLFQSI 386 + F LP + N++ R++ L L H + ++ Sbjct: 237 I-------GDNKGFFVLPVRVAINSIYDRVKNDILKEEKLHERLGLLHSEAL--EYYREH 287 Query: 387 KSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGR 446 S + E + K+ + + T+DQ+ + K ++ + + Sbjct: 288 LSNSEELDIFEYSD----------RGKILSLPLNISTLDQLFGFIFGYKGYEMKLVTLAY 337 Query: 447 SVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVE 506 S +++DE+ YD + L L+ GG + +++ATL K L G+ + Sbjct: 338 SKIVIDEIQMYDAELLAYLVFGLRKIHQFGGKIAIVTATLSPFLKDILRRDTGIEFKEQQ 397 Query: 507 NNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANA 566 N R + E L IQ N Sbjct: 398 -----------FSNNLMRHSIKVKQESLSAEDIIQCYKKN---------------KMLNH 431 Query: 567 GAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKR 626 ++ ++CN + AQ Y LKE + +++++FH+RFT NDR++ E+ + Sbjct: 432 SNKILVVCNTIRKAQEMYDELKE-ADIDLNLNVFHSRFTRNDRKQLESEIKEFGKTYSDE 490 Query: 627 NVGR------ILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEI 680 G I +AT VVE SLD+DFD+L T+ + LFQR+GR +R +K + Sbjct: 491 KQGVLDSRDGIWIATSVVEVSLDIDFDYLFTELSELNALFQRMGRCNRKGKKD----IDE 546 Query: 681 PVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEM 740 + DG+ R + + + ++ + + +G + ++ + + Sbjct: 547 YNCFVYC-DGKDVKRGRKGFLDAVLYTQSMKALSNCDG--PISEEDKLALIEKYFTTEAV 603 Query: 741 DEPEWVGNGMDKFESAEC-------EKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMS 793 E +++ + F + E+ + + D E+I + ++ Sbjct: 604 SESDYLKEYNETFNKFKIGVKVSDGEQDLRNIFSQNIVPKSVYLDYKESIEGLQKNLMDV 663 Query: 794 LPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWL 853 + + +L+ +++ Q E L V++P + + Sbjct: 664 EKQIKEEKKLGKDKLILNNLWKRRLEIQ--EQLKGYIVSIPKYMYIKY-------KRHEI 714 Query: 854 EGKQNLDGWVWQGNSIVITYTGDEGM 879 E + ++ ++ + ++G Sbjct: 715 EIFGEIKINRFETIPVIDCHYDEKGF 740 >UniRef50_C4V2W5 CRISPR-associated helicase Cas3 n=2 Tax=Selenomonas RepID=C4V2W5_9FIRM Length = 814 Score = 326 bits (834), Expect = 3e-87, Method: Composition-based stats. Identities = 117/879 (13%), Positives = 243/879 (27%), Gaps = 136/879 (15%) Query: 46 VVLQNTFCRNEMLSKQRVKAW----LLFFIA-LHDIGKFDIRFQYKSAESWLKLNPATPS 100 +++ R L K+ L + I LHD+GK F + Sbjct: 18 QSMEDHLLRVGNLMKEDAARLGLSSLAYLIGVLHDLGKCTAEFAEYLDWCRKHPGDYS-- 75 Query: 101 LNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHH 160 + +H AG + + HH Sbjct: 76 -------RRGEVDHATAGGQLL------------LVQYGRKNADYRFVAEIASLVIFSHH 116 Query: 161 GFILHSQDQDKSRWEMPASLASYAAQDKQAREEW---------ISVLEALFLTPAGLSIN 211 +L+ QD + E L D +R + L +F + I Sbjct: 117 TGLLNYYGQD-GKDESSDFLRRNDKADILSRVDLKYFFSEVIAEEELNRIFEQ-SIYEIV 174 Query: 212 DIPPDCS----------------------SLLAGFCSLADWLGSWTTTNTFLFNEDAPSD 249 D+ + LL AD L S ++ + Sbjct: 175 DLDAKIACAVHCSDDEMSEAYCFYWGMVHKLLLSMLIDADRLDSAEFELDRPLTDEWET- 233 Query: 250 INALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGL 309 + L L + A + + + A PG+ Sbjct: 234 ----AEIWASFSDKLECKLAGFSLPKEPK------AKKIAQLRKKISDDCLKAAEEEPGI 283 Query: 310 TVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPN 369 + PTG GKT ++ +A + + +I +P + + + + Sbjct: 284 FRLCVPTGGGKTLASMRFALQHAQRYQKKRIIVVIPYTSIIDQNVKEIRDIFR---VDEA 340 Query: 370 LILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLI 429 ++ H N + + W ++ + I T Q L Sbjct: 341 ILEHHSNV---------------ITEADGEDTESMDWRRILTER-WDVPIIFTTQVQFLN 384 Query: 430 SVLPVKHRFIRGLG-IGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVG-GSVILLSATLP 487 ++ + IR + + S++I DE+ L A + D + +L +AT P Sbjct: 385 TLFAGGNSSIRRMNSLQDSIVIFDEIQTLPVRCTFLFNAAMNFLKDFCRITAVLCTATQP 444 Query: 488 MKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFS-IQPEPIC 546 +K +N + + + E+ F + E Sbjct: 445 PLEK-----------------------LDVSINLSDNAAMTSDIEKTFEGFERVDVENCY 481 Query: 547 LADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKE---LNNTQVDIDLFHAR 603 + + + V I NL A+ YQ + E L++ ++ I + Sbjct: 482 RDGGWSAEEIASEICKSVEEIGDVLCIVNLTKKAKEIYQAVSEKIQLSDKEIQIVHLSTK 541 Query: 604 FTLNDRREKENRVISNFGKNGKRNV-GRILVATQVVEQSLDVDFDWLITQHCPADLLFQR 662 R+ + + + ++TQ++E +DV F + + Q Sbjct: 542 MCSAHRKATLKELRRALAERKNHPEKRLVCISTQLIEAGVDVSFPVVYRALAGFSSIAQA 601 Query: 663 LGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLF 722 GR +RH + A L + ++I + + + ++ Sbjct: 602 AGRCNRHGEMEKGIVRVFECADENLDHLKDIRHGKNI---------ARVMLYDRAANTIL 652 Query: 723 FPDAYRQWLDSIYDDAEMDEPEWVGNGM----DKFESAECEKRFKARKVLQWAEEYSLQD 778 P +++ Y E + + D + + + + + + Sbjct: 653 SPSIMQEYFRRFYAGRTGKEMRYPLSTQNTIFDLLSGNSAGVQARMGRGDRISSYFRQAF 712 Query: 779 NDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWK 838 D D L+PY D ++++ S +Q ++ VN+ Sbjct: 713 RDAGRSFTVIDSHSEAVLVPYAGGKDMIVAFDDRIFDRKSIGKQMKSAQQYMVNLFSYEI 772 Query: 839 RSFSEV----VDEDGLLWLEGKQNLDGWVWQGNSIVITY 873 + + + E G++ L + + + Q Y Sbjct: 773 KELAGLGAVWRTESGVMALREEYYNEAFGVQTEEQGNAY 811 >UniRef50_B5JKF7 CRISPR-associated helicase Cas3 domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JKF7_9BACT Length = 790 Score = 326 bits (834), Expect = 3e-87, Method: Composition-based stats. Identities = 138/804 (17%), Positives = 250/804 (31%), Gaps = 136/804 (16%) Query: 5 KYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCW-WDQSVVLQNTFCRN---EMLSK 60 +Y YW K + LD A +C D+ L F E Sbjct: 26 EYAAEYWEKLFTDCQNRD------CSGLD-ACCGECGHLDKVARLTAKFSEEMFPEGSDD 78 Query: 61 QRVKAWLLFFIAL-HDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGL 119 +V +F L HD+GKF +Q + + + K +H AG Sbjct: 79 AKVAREWGWFAGLWHDLGKFAPDWQEYLKK---------KVSDAHRDECIGKVDHSTAGA 129 Query: 120 YWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQD-----KSRW 174 W S L + A+ GHH + S+ + + + Sbjct: 130 QWAVARSAMVGHL-------------------FAYAIAGHHSGLADSESESACLSKRLKK 170 Query: 175 EMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSW 234 + + A A + + ++ F + + S +L AD+L Sbjct: 171 SVASLGAVPDAITRLEVPKLPPAVQRRFRDCLLPNASPAFALYSRMLFSCLVDADFLA-- 228 Query: 235 TTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPR 294 T +F+ A A + + Q ++ +E G+ ++ + Sbjct: 229 --TESFMNPGQAKDRSKAPSSLIERMDQILTQHVEDFGVPNSSVNQA----------RSA 276 Query: 295 QLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAML 354 Q ++A GL + PTG GKT ++LA+A + + VI+ +P + Sbjct: 277 VYQQCLEAAENPVGLFTLTVPTGGGKTLSSLAFALRHAIRHRQRRVIYVIPFTSIIEQNA 336 Query: 355 TRMEASASHL---FSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSN 411 L P ++ H N + ++ Sbjct: 337 QVFAEVFDALSKELGIPIVLEHHSN----------------------LSPESETIQTRLA 374 Query: 412 KKVFLGQIGVCTIDQVLISVLPVKHRFIR-GLGIGRSVLIVDEVHAYD-TYMNGLLEAVL 469 + + I V T Q S+ + R I SV+I+DE Y++ L+ + Sbjct: 375 SENWDAPIIVTTAVQFYESLHAARTSSCRKLHNIANSVVILDEAQCLPRDYLHPCLDVLQ 434 Query: 470 KAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLA 529 + A SV+L +AT P +K + P+ + A+ +I+ D Sbjct: 435 QLAAIYHTSVVLCTATQPAIKKSETF--------PIGIDGAFEIIS----------DPQL 476 Query: 530 HPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKE 589 E L I P+ + NA Q I N A+ + RL Sbjct: 477 LFENLRRVQVINRGPLEDG----------VIAREMNAEPQCLAIVNTRRHARELFNRLA- 525 Query: 590 LNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWL 649 ++ + R+E LV+TQ++E +DVDF + Sbjct: 526 ---SEGEAYHLSTLMCPLHRKEILREARELLV----VKKPVRLVSTQLIEAGVDVDFPRV 578 Query: 650 ITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRT 709 D + Q GR +R+ + L E + V T Sbjct: 579 YRSMAGIDSIGQAAGRCNRNGKLESLGET-------HLFASEHQRSEAYFRETTNV---T 628 Query: 710 QQHIEELNGASLFFPDAYRQWLDSIYDD-AEMDEPEWV-GNGMDKFESAECEKRFKARKV 767 Q + + Q+ Y + + W ++ + + + Sbjct: 629 SQVLA--LNEDPLSLASVEQFFHLYYHEHRPANGKRWDSKEILEDYRLNQNRSLPFGFQF 686 Query: 768 LQWAEEYSLQDNDETILAVTRDGE 791 + A+++ L +ND+T + + DGE Sbjct: 687 REVAKKFQLIENDQTSIVIHYDGE 710 >UniRef50_D2QT48 CRISPR-associated helicase Cas3 n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QT48_9SPHI Length = 762 Score = 325 bits (832), Expect = 6e-87, Method: Composition-based stats. Identities = 138/801 (17%), Positives = 267/801 (33%), Gaps = 120/801 (14%) Query: 39 DCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIAL-HDIGKFDIRFQYKSAESWLKLNPA 97 D + L++ + +Q F AL HD GK + FQ Sbjct: 22 DLVLKAWLQLRDRYATVLGEDEQFWFD--SFIAALFHDFGKASVNFQNMLLAILK----- 74 Query: 98 TPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVT 157 + + H ++ + + + AV Sbjct: 75 ----EPIAEKGYDPMRHEFLSGLLLAAHTI----------LVTRSRKDLSANPAQLFAVF 120 Query: 158 GHHGFILHS---QDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIP 214 HH QD K P ++ A +Q +E Sbjct: 121 THHKDFTPDLFCQDAIKQWKIKPNDAGAFFAYARQRIQEHYPDKGDFLNGIEAAWEFMAN 180 Query: 215 PDCSSLLAGFCSLADWLGSW--------TTTNTFLFNEDAPSDINALRTYFQDRQQDASR 266 S LL+ + D + ++ + + + ++ Sbjct: 181 KPASLLLS----VKDRAITEPTLARLKEQREYSYRKTYLLHKALLVIADWTASGHRNLEE 236 Query: 267 VLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALA 326 L + ++ E V R+ Q + G + APTGSGKTE +L Sbjct: 237 PLRYDEELIRRKVAERVQKAGGTFTGFREFQDKSGQIA---GNVLAIAPTGSGKTEASLL 293 Query: 327 YAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFS--SPNLILAHGNSRFNHLFQ 384 +A ++ + +++ LPT+ TAN++ R+ + H +++ L Sbjct: 294 WA---SQREGFEKIVYLLPTRVTANSLYLRLGEYFGKASDGVDDYTAVVHSSAKLFRL-- 348 Query: 385 SIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGI 444 + + + F + V T+DQ+L + ++ + Sbjct: 349 --------------ELDETYSNFNYLREAAFFKAVTVATVDQMLTQGFNLGWWEMKTFHL 394 Query: 445 GRSVLIVDEVHAYDTYMNGLLEAVLKAQA-DVGGSVILLSATLPMKQKQKLLDTYGLHTD 503 R+ +I+DEVHAY Y GL+ A ++ + +++AT+P K + L G Sbjct: 395 FRAKVIIDEVHAYAPYTLGLIVASIRYLRQNFQTQFYIMTATMPQKLQALLTRELGNDVT 454 Query: 504 PVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAA 563 + + + + + + + Sbjct: 455 VLRDQE----------------------------LLDKKRNVFHVEDRTIDQLRPDIEQD 486 Query: 564 ANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKN 623 AG +V ++ N VD A Y + + +H+RF + R EKE +++ + Sbjct: 487 LKAGKKVLVVVNTVDEAIRLYDQYADYKP-----ICYHSRFIVKHRTEKEQAILN--NEK 539 Query: 624 GKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVA 683 K G +L+ATQVVE SLD+D+ L T++ P D + QR GR++R R Sbjct: 540 EKPKEGFLLIATQVVEVSLDIDYQSLYTENAPIDAIIQRAGRINRKRRDEPGK------- 592 Query: 684 TILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEP 743 ++ P E +H + Y ++ T +++ G ++ ++ +Y D ++ Sbjct: 593 VVVFPHSEVAEKHVYDY-PAGILNTTLDVLKQHQGVAV-SEQDLLNMVEEVYKDWNVENE 650 Query: 744 EWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTS 803 E + + K+E +K Y +++ TR+G ++ ++P Sbjct: 651 ELYKDELSKYERLVRDKC-----------SYLYDFSEDMEQVFTREGLDTVSIIP---DC 696 Query: 804 SGKQLLDGQVYEDLSHEQQYE 824 +L+ V E HE Sbjct: 697 FKPELVSASVLEKSKHEVAIR 717 >UniRef50_C5UTG9 Metal dependent phosphohydrolase n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UTG9_CLOBO Length = 775 Score = 324 bits (831), Expect = 7e-87, Method: Composition-based stats. Identities = 136/821 (16%), Positives = 274/821 (33%), Gaps = 125/821 (15%) Query: 39 DCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPAT 98 + + L+ + + ++ L HD+GK + +FQ K ++ K Sbjct: 20 EKLIEAYETLKKIYPDIKNMNWD----LLKLACIYHDLGKMNTKFQNKIVKNINKDFEKN 75 Query: 99 PSLNGPST-----QMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWV 153 + + HG + D L E + Sbjct: 76 GYSERLPLLEDEFEEVEEIPHGYLSNAFIPFDYLEENFTEE-------------EIRILY 122 Query: 154 EAVTGHHGFILHSQDQDKS-RWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSIND 212 E++ HH D+ K + L Y Q R + + Sbjct: 123 ESIFYHHNREHLQGDRKKELNLIIKNDLNKYLNQFIYGRL------------VCSTNKIN 170 Query: 213 IPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSG 272 + L D+ S + L + + Sbjct: 171 LNNRFMKFLKSRVLD-DY--SILNHEEYKIASKFIMTKGLLNKIDYAASSNVKIEI---- 223 Query: 273 LVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLI 332 + E + Y+ +LQ + + +I+A TG GKTE AL + Sbjct: 224 ---SPGNLEELTKKSLEPYKINELQQYMKE--NSQENLIIKASTGIGKTEGALMWI---- 274 Query: 333 DQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAIT 392 + F LP + + N++ R+ + + L H NS ++ ++ K Sbjct: 275 ---GNNKGFFTLPLRVSINSIYDRVASKIK--YGKDRTGLLHSNSASEYMKRNEKGTIDK 329 Query: 393 EQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVD 452 + K + +CT+DQ++ + + ++ + S +I+D Sbjct: 330 KYLDTT--------------KQLSLPLTICTLDQLIGFIFKYEGFELKLATLSYSKVIID 375 Query: 453 EVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYP 512 E+ Y + M L L+ VGG +++AT P + + + + N Y Sbjct: 376 EIQMYSSEMIAYLIIALRDIVKVGGKFAIVTATFPPIFEHFM------NYAGIVKNVDYK 429 Query: 513 LINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCL 572 + ++ + ++ + D + + E +V + Sbjct: 430 IPTKA------------FLKKNNGQVMLRHKVKVWEDDIDAKFIYEN-----YKNKKVLV 472 Query: 573 ICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRIL 632 I N V AQ Y+ L++ ++ + DI +FH+R+T DR +KE + K I Sbjct: 473 IVNTVKAAQKLYENLEKYDDIKNDIFMFHSRYTQEDRAKKEITIFE--NGQLKNKFSGIW 530 Query: 633 VATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEG 692 + TQVVE SLD+DFD L T+ L QR+GR++R+ R I V G Sbjct: 531 ITTQVVEASLDIDFDVLYTELSDISGLLQRMGRVYRN-RILDTDKVNINVFVGGNKLPSG 589 Query: 693 YGRHEHIYS---NVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNG 749 + Y ++ + ++++ I + +G L + ++ +Y + E ++ N Sbjct: 590 IHDNMSNYESIIDIDIFNKSKEAILKYDGLKL-DEEEKMLLVEDVYSVKNLKESKYFSNI 648 Query: 750 MDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLL 809 D + Y L+ N+ + ++ S ++P + K+ + Sbjct: 649 KD------------TINIYNDLIPYDLKKNEAKLRNIS-----SETVIPEDVYKNNKEEI 691 Query: 810 DGQVYEDLSH-------EQQYEALALNRVNVPFTWKRSFSE 843 ++ +D++ + + L V + + S + Sbjct: 692 K-KILDDINETNAYDEKIRLKDELMKKTVTISSSMFDSIEK 731 >UniRef50_B3EG04 CRISPR-associated helicase Cas3 n=3 Tax=cellular organisms RepID=B3EG04_CHLL2 Length = 750 Score = 324 bits (831), Expect = 7e-87, Method: Composition-based stats. Identities = 152/821 (18%), Positives = 279/821 (33%), Gaps = 135/821 (16%) Query: 12 GKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSK-QRVKAWLLFF 70 KSS T L+ H + ++ + + + L + Sbjct: 6 AKSSPKET-------LLEHT-------EKCLSVFRNIREMYSEVPEICSCEDFFEHLFYA 51 Query: 71 IALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQ 130 I LHD GK FQ E ++ + H + Sbjct: 52 IFLHDFGKAATGFQQMLNE-----------------EIKWNYRHEILSSSFVTFLDFDSP 94 Query: 131 SLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQA 190 + HH + Q++ + Y+ + Sbjct: 95 FKEG-----------------IALGIITHHNDLSLLQEKFPFSKFNETAYERYSKNLSEL 137 Query: 191 REEW------ISVLEALFLTPAGLSIND--IPPDCSSLLAGFCSLADWLGSWTTTNTFLF 242 + + L L G + IP L A + + +L Sbjct: 138 EPNFAYITKMMEQLPELSEKYLGYRVKRHKIPKSFEELEA-------YNAYQSAVKPYLK 190 Query: 243 NEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDA 302 +D + L + + + + +H + ++ + +A Sbjct: 191 WDDDEDEQAILHGEYGFFLKGFMTACDHLASSGKDEIFSAIHD-MKAVFKFSSYRSSQEA 249 Query: 303 LPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASAS 362 V G T + APTGSGKTE AL +A ++++ V + LP A+ NAM R+ Sbjct: 250 AAVTKGSTFLTAPTGSGKTEAALLWASSNQNERLGKRVFYVLPYTASINAMYKRLAGL-- 307 Query: 363 HLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVC 422 F + + HG + + K + E EEA + S K +I Sbjct: 308 KGFGDEKVGIRHGKAS----YFLYKYFSEREYSPEEAKAFAKDAGNLSKKIYKPYKII-- 361 Query: 423 TIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQ-ADVGGSVIL 481 T Q++ +K R + + I+DE+HAYD + L+ + K + + Sbjct: 362 TPFQIIKEFFGLKGFEQRIAEMTGGLFILDEIHAYDVHNTALILEICKILKKEFCAKFFI 421 Query: 482 LSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQ 541 +SATLP K D + + P + F+ Sbjct: 422 MSATLPKFLKMYFQDVLEIENEI------------------------TLPPEELHSFTRH 457 Query: 542 PEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFH 601 + ++ L ++ + G +V ++CN V AQ ++ LK+ + L H Sbjct: 458 KLLLLEGNIRD---GLAQIRSEIKTGKKVLVVCNQVKTAQEIFRGLKDCSENS---ALLH 511 Query: 602 ARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQ 661 +RF + DR+E E V + +LVATQ+VE SLD+D+D L ++ P D L Q Sbjct: 512 SRFIVRDRQEIEKYVNDKYD---------LLVATQIVEVSLDIDYDILFSEPAPIDALIQ 562 Query: 662 RLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASL 721 R GR++R P V P + IY RV +T +++++G +L Sbjct: 563 RFGRVNRKR---PPINEIKAVCVFQSPSENDF----WIYKPERV-EKTLSILQKVHGENL 614 Query: 722 FFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDE 781 +Q +D +Y D + G +++FES ++ L + ++ +++ Sbjct: 615 -SESIVQQLVDEVYADG------YKGKDLEEFESIRSNFMKLWKETLPFIDDRRKEEDFY 667 Query: 782 TILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQ 822 + S+ ++P S + ++ + Y + Sbjct: 668 AL-------FDSIEVVPEKYMSDYELCINKKDYFRTTEFFV 701 >UniRef50_C9M4Z3 CRISPR-associated helicase Cas3 domain protein n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M4Z3_9BACT Length = 810 Score = 324 bits (831), Expect = 7e-87, Method: Composition-based stats. Identities = 135/913 (14%), Positives = 265/913 (29%), Gaps = 179/913 (19%) Query: 12 GKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFI 71 + + + H AA+A+ + +Q + Sbjct: 19 AHTRRE-EDHLIEQTVEEHVRGTAALAESFANQWG-----------------DGFWGRLA 60 Query: 72 AL-HDIGKFDIRFQYKSA------ESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQ 124 + HD+GK ++Q + + + + K +H AG Sbjct: 61 GMYHDLGKSACQWQEYLRVQDYDESASSESSEDEDKDDDKKKNPIHKVSHSEAGAA---- 116 Query: 125 DSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQ----------------D 168 ++ + F P+ A+ GHH + + D Sbjct: 117 ------AVLEGFWDNWDEPNVSGPLTGLAYAIAGHHAGLADWRTGGRGALINRLATKNGD 170 Query: 169 QDKSRW---------------EMPASLASYAAQDKQAREEWISVLEALFLTP-AGLSIND 212 D SR + PA L + EE LE F + + Sbjct: 171 LDVSRLLNPLRQALGTGARQVDYPAELTRLDSVALNLNEEIRQWLEKWFADDGSEDVPRE 230 Query: 213 IPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSG 272 +L AD L T F + A QD + ++ Sbjct: 231 YLNLWVRMLYSALVDADSL----DTERFCRPDQAAQRSRQFD--MQDLKHRFDSYMDEKE 284 Query: 273 LVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLI 332 ++ K N + + L A PG + PTG GKT +LA+A + Sbjct: 285 RLAEKSP--------VNEVRSKVLGWCRQAGHCEPGFFQLTVPTGGGKTLASLAFALEHC 336 Query: 333 DQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAIT 392 +I+A+P + +F +L H ++ Sbjct: 337 LTNGRRRIIYAIPYVSIIEQT----ADVLRGIFGDTGAVLEHHSNILPE----------- 381 Query: 393 EQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRG-LGIGRSVLIV 451 ++ + + I V T Q+ S+L + R I RSV+I+ Sbjct: 382 ----------RETLQNKLAAENWDAPIVVTTNVQLFESLLSDRRVLCRKIHNISRSVIIL 431 Query: 452 DEVHAYD-TYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSA 510 DE +M G+L + G +V+L +AT P L T+ + Sbjct: 432 DEAQMLPLQHMRGVLSVLKGLVKHFGVTVLLCTATQPA-----LTRTFSDGQNVSFPGLP 486 Query: 511 YPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQV 570 P P + + + +V Sbjct: 487 EPR--------------QIVPAGADLYQKLLRAEWVRDYNPTQPRTWDELADDLLKHQRV 532 Query: 571 CLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGR 630 + N + Y+ +K + + A R ++ + + Sbjct: 533 LAVVNRRGDCRELYEVIKSRSGEN--LFHLSADMCPQHRSDRIGEIKALLKDES---RTV 587 Query: 631 ILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDG 690 +++TQ++E +D+DF + C D Q GR +R + + L G Sbjct: 588 RVISTQLIEAGVDIDFPVVFRALCGLDSAVQAAGRANREGQLNK-----------LGKLG 636 Query: 691 EGYGRHEHIYSNVRVMWRTQQ----HIEELNGASLFFPDAYRQWLDSIYDD-AEMDEPEW 745 + Y S V ++ + +Q + + LF P +++ + +Y D D+ ++ Sbjct: 637 QLYLFSPMKPSPVGLLLKGEQTFKAMLGQKTEFDLFCPSVIKEYFNRLYRDVGTFDQSKY 696 Query: 746 VGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSG 805 ++ E E + + ++ + D++ G G Sbjct: 697 YELLVENAECFEFQ-------FRTFGRDFHMIDDEGRQSVFVAYGA-------------G 736 Query: 806 KQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQ 865 +L+ G++ + ++ Q AL V++P + + + +G+ Q Sbjct: 737 AELI-GELKRNGANPQLLRALQRYSVSIPESKLKEL--------RYSGAVDETDEGYFVQ 787 Query: 866 GNSIVITYTGDEG 878 Y + G Sbjct: 788 SE--AFVYDLETG 798 >UniRef50_B0MPS6 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MPS6_9FIRM Length = 812 Score = 324 bits (831), Expect = 7e-87, Method: Composition-based stats. Identities = 109/883 (12%), Positives = 250/883 (28%), Gaps = 139/883 (15%) Query: 29 YHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYKSA 88 HC A +L ++ + + LHD+GK + F Sbjct: 25 EHCKKTA-----------LLARSYSAPFNMESTVFVS-----ALLHDMGKLNNDFDGYIK 68 Query: 89 ESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYES 148 + + + +H AG + + D + E Sbjct: 69 Q--------------ENGIKRGEIDHSYAGAKFLLE-----------LVSNDDDKYKKEV 103 Query: 149 WFPWVEAVTGHHGFILHSQ-----------------DQDKSRWEMPASLASYAAQDKQAR 191 + HHG D+ KS S + +A Sbjct: 104 ARLIARIIISHHGLNDWYTRNNDDYFDYRCSKNERYDEIKSNISELISDSKLDELLNKAA 163 Query: 192 EEWISVLEALFLTPAGLSINDIPPDCS-------SLLAGFCSLADWLGSWTTTNTFLFNE 244 +E+ + E + + L AD + E Sbjct: 164 DEYRRIFEKMKEICCAKDRKQYFTTLAFYHGLLERLTESCLIDADRTATAEFMEGIEITE 223 Query: 245 DAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALP 304 + +I + R + K L + + Sbjct: 224 PSEDEIRRNWLDMKQRLDN-------------KLSKFSGSDSLISKLRMNISDRCCAFAK 270 Query: 305 VAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHL 364 G+ + PTG GKT +AL +A + + + + + P + + + Sbjct: 271 NDVGIVQLIVPTGGGKTLSALRFAIEYAVEHKKERIFYISPFMSILEQNGDVIRE----I 326 Query: 365 FSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTI 424 N + H + + KS+ E+ ++C + + Q+ T+ Sbjct: 327 AGDDNYLEHHSDMYSKIIDNKHKSKEEVNDELEDYELRC---------RHWDKQVICTTM 377 Query: 425 DQVLISVLPVKHRFIR-GLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADV-GGSVILL 482 Q ++ + +R SV+I+DEV + L + ++ G +++L Sbjct: 378 VQFFDTLFSSRTEALRRMHRFTDSVIIIDEVQSIPIRCVYLFNLAMNFLSEFMGCTIVLC 437 Query: 483 SATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQP 542 SAT P YP++ + + + + R + Sbjct: 438 SATQPTF-----------------EQCKYPIMLDKDSSMTGDY---TKDFEDFKRTEVVS 477 Query: 543 EPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQ---RLKELNNTQVDIDL 599 + + ++ + + + N A ++ +L + + + Sbjct: 478 LLNNQGNTYEEAAVI--CMDKYRENGNLLFVVNTKTAAAEIFRNVTQLNDEEEIKAKVVH 535 Query: 600 FHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLL 659 RR+ + + N I + TQ++E +D+ F +I D + Sbjct: 536 LSTNMCPAHRRKAIDDIRRML----DNNERVICITTQLIEAGVDISFKCVIRSSAGLDNI 591 Query: 660 FQRLGRLHRHHRKYRPAGFEIPVATILLPDG--EGYGRHEHIYSNVRVMWRTQQHIEELN 717 Q GR +R+ R V I L D E G+ + + + + Sbjct: 592 AQAAGRCNRNGEDDR-----RNVYIIKLKDEYIEKLGKLKEAQRQCGL------IVRKYG 640 Query: 718 GASLFFPDAYRQWLDSIYDDAEMDEP-EWVGNGMDKFESAECEKRFKARKVLQWAEEYSL 776 L D +++ Y+D D + + + + + + Sbjct: 641 CEQLLSVDIMKRYFRDYYEDCACDSNGDMLEYQIRNSNYSLLDLLSCNIIFSNDKGNWKS 700 Query: 777 QDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFT 836 + +T R + + + ++++ + + + Q E + + Sbjct: 701 RQAFKTAGDNFRMIDNNTIDIIVPYNEEASRIIEA-LNGETTISQALELQRKAQQYIVNV 759 Query: 837 WKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGM 879 + +F ++ + D L ++ +++ +++ Y G+ Sbjct: 760 YDYTFKKLAENDALNEIKVRRDEKMYIYALKKEF--YNNATGL 800 >UniRef50_A7HLK7 CRISPR-associated helicase Cas3 n=5 Tax=Bacteria RepID=A7HLK7_FERNB Length = 800 Score = 324 bits (829), Expect = 1e-86, Method: Composition-based stats. Identities = 139/897 (15%), Positives = 279/897 (31%), Gaps = 166/897 (18%) Query: 25 HL---LIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDI 81 H LI H +V + E ++ +K HD GKF Sbjct: 22 HPDKRLIEHLKEVYEI----------------SQEKINDGDLKKCFKIIAYTHDFGKFTT 65 Query: 82 RFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDA 141 FQ + + + HG + SL E F Sbjct: 66 YFQKYLE----------------TKKEGKYAKHGFISALFAAFCSLKEFGTESFLPLISY 109 Query: 142 APHPYESWFPWVEAVTGHHG--------FILHSQDQDKSRWEMPASLASYAAQDKQAREE 193 + V HHG + ++ S +++ + + Q + Sbjct: 110 S------------VVLHHHGDLENVDNHLPISTRGIMNSDYKLADKIEIFEVQRNDIIKN 157 Query: 194 WISVLEALFLTPAGLSINDIPPDC------------SSLLAGFCSLADWLGSWTTTNTFL 241 S++E + +L + S Sbjct: 158 KDSIIEEYKTIDEQEEYKINFVEYIQKFLECDIVEVLKMLKQIKIKLEKEKSDDVFFIHQ 217 Query: 242 FNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQ---LQV 298 A + L +A ++ L N + +Q Sbjct: 218 LLYSALISADKLSASGTIIPNEAFASFAELNRGREVMIKTAINNLGINEIRNEIFERIQK 277 Query: 299 LVDALPVAPGLTVIEAPTGSGKTETALAYAWKLID-QQIADSVIFALPTQATANAMLT-- 355 ++ + I APTG+GKT A KL + ++++LP + + Sbjct: 278 NLEKYYNKSRIFTITAPTGTGKTFAGFFAAVKLRELLGGNRRIVYSLPFTSIIDQNYETI 337 Query: 356 -RMEASASHLFSSPN--LILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNK 412 ++ + + +I H + ++ K + S+ Sbjct: 338 YQIHKVLKNFERESSKYIIKHHSLVKPEYIENEYKYDLLE---------------SELLI 382 Query: 413 KVFLGQIGVCTIDQVLISVLPVKHRFIRGL-GIGRSVLIVDEVHAYDTYMNGLLEAVLKA 471 + + I V T Q+ +++ ++R ++ L I S++I+DE+ A D + L+E VL+ Sbjct: 383 ENWSSGIIVTTFVQLFETLISTRNRMLKKLINIKGSIIILDEIQAIDISLLPLIEYVLEK 442 Query: 472 QAD-VGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAH 530 + +IL++AT P K L + ++NN Y F + Sbjct: 443 ATELYDLRIILMTATKPYIFKDSL--------ELLDNNEKY-------------FSIFNR 481 Query: 531 PEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKEL 590 LP S + E + ++CN ++ + Y+ LK Sbjct: 482 TTLLPNLSSRKLEDFIKE------------LKENLQDKSYLIVCNTINSSLEVYENLK-- 527 Query: 591 NNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLI 650 + R EK ++ K K ILV+TQVVE +D+DFD +I Sbjct: 528 -GINRPVFYLSTNLLPIHRLEKIKKIKELLSKGEK----IILVSTQVVEAGVDIDFDVVI 582 Query: 651 TQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQ 710 P D + Q GR +R++ K + + + YG +IY + + T+ Sbjct: 583 RDIGPLDSIIQCAGRCNRNNLKENGTVYVYSLIPNESNNDLTYGYGRYIYG-LTTLQETK 641 Query: 711 QHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQW 770 + +++ + + Y + + + + + + K K+ + Sbjct: 642 KILQK---SEKYSEKDYFCLISEYFKSIQENLSKKRSENLIKSIKTLNFSEDKSENITPI 698 Query: 771 AEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEAL---- 826 ++S+ +N + V ++ + G + + +E++ + L Sbjct: 699 -SDFSIIENKPNFVDVF--------VMCDDISEEGFKRFCDIIKLKDYYEKREKYLEIKP 749 Query: 827 --ALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMTR 881 + ++VP + SF V++ GL + + + Y + G R Sbjct: 750 IISNYTISVPIEYHSSF---VEQFGLYVIPRE-----------IVNDYYNYETGFKR 792 >UniRef50_UPI000197377D putative helicase n=1 Tax=Clostridium sp. M62/1 RepID=UPI000197377D Length = 758 Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats. Identities = 144/905 (15%), Positives = 270/905 (29%), Gaps = 199/905 (21%) Query: 15 SKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALH 74 + G ++ H L F ++ LH Sbjct: 11 AHISEDGKREQTILEHLEGTG-----------RLAEQFAEVFG-----FGSYGYALGKLH 54 Query: 75 DIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGD 134 DIGK+ FQ + T+ +K +H AG + Sbjct: 55 DIGKYSFEFQKRL------------------TENGKKVDHATAGARLCWEQ--------- 87 Query: 135 FFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKS------RWEMPASLASYAAQDK 188 PY + AV GHH + + + M L S+ K Sbjct: 88 --------KGPYSPYGMLAYAVAGHHSGLPDTGGDGDLAGRGTLKGRMKKKLCSFEEYRK 139 Query: 189 QAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPS 248 + +S T G +L AD+L T F+ + Sbjct: 140 EVDFPALSAPTNFRGTDRGEDPGFAQSFLIRMLYSCLVDADYL----DTEAFMKEKVERD 195 Query: 249 DINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPG 308 L + + ++ +SG + N NG + L+ ++ + G Sbjct: 196 SGEKLESLLKKLEK------HVSGWLDNHDRRT------VNGRRSEILRQCLEKGTLPRG 243 Query: 309 LTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSP 368 L + PTG GKT ++LA+A + + VI+ +P + S + Sbjct: 244 LFRLTVPTGGGKTISSLAFALRHGAEHEMKRVIYVIPYTSIIEQN----AKIFSDILGRE 299 Query: 369 NLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVL 428 N++ H N + + E + + V T Q Sbjct: 300 NVLEDHCNIDYESDEELKPLHLAAEN--------------------WDKPVVVTTNVQFF 339 Query: 429 ISVLPVKHRFIR-GLGIGRSVLIVDEVHAYD-TYMNGLLEAVLKAQADVGGSVILLSATL 486 S+ K R I SV+I DE Y+ + A+ + +++L +AT Sbjct: 340 ESLFSNKSSKCRKLHNIADSVIIFDEAQMLPCEYLRPCIAAMEELLLRYRSTLVLCTATQ 399 Query: 487 PMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPIC 546 P GL + P + ++F + L + Sbjct: 400 PAL--------GGLFRKSITWEELCP-------DREEQFQFFKRCQILNLGRIRR----- 439 Query: 547 LADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNN--TQVDIDLFHARF 604 E +I Q I N Q YQ LKE ++ +I + Sbjct: 440 -----------EELIDRLEQEDQALCILNTKREVQEVYQELKERRGQSSEGEIFHLSTQM 488 Query: 605 TLNDRREKENRVISNFGKNGK-------------------RNVGRILVATQVVEQSLDVD 645 R+ + GK + I++AT +VE +D+D Sbjct: 489 YPEHRKAVLEEIRKRTGKRAEGKSQIEKTGIEEETEETESAGNVCIVIATSLVEAGVDLD 548 Query: 646 FDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRV 705 F + + D Q GR +R ++ + D EG + V Sbjct: 549 FASVYREMAGLDSAIQAAGRCNREGKRPLEESRT------WIFDMEGEKKTAEQEQRAEV 602 Query: 706 MWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKAR 765 M + + E G SL P+A ++ +Y +F+ +E ++ K Sbjct: 603 MSGMLEKL-ERAGKSLNSPEAAEEYFRYLY----------------QFKGSELDR--KHI 643 Query: 766 KVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYE- 824 +S + + E ++ LL V+ S+ K + ++ + Sbjct: 644 MEYFHPGNFSFASAAQEFKMI---EEHTVSLLIPVEESAEKIAEEIRLKGCSRKRMREAG 700 Query: 825 --ALALNRVNVPFTWKRSFSEVV---DEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGM 879 ++++++ + + +E++ +EDGL L+ ++ Y+ + G+ Sbjct: 701 RYSVSVDKKKIEEFCRNGIAELLTEGEEDGLYLLKRREQ--------------YSQEVGL 746 Query: 880 TRVIP 884 + Sbjct: 747 LMEVE 751 >UniRef50_Q0AZP4 CRISPR-associated helicase, Cas3 family n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AZP4_SYNWW Length = 717 Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats. Identities = 113/829 (13%), Positives = 225/829 (27%), Gaps = 163/829 (19%) Query: 7 ICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAW 66 + Y+ S++ + LL H +V+ A + + W Sbjct: 1 MIKYYAHSTEGEE--ENWQLLKKHLENVSHRAGI-----------YASCFGAEE-----W 42 Query: 67 LLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDS 126 LHD GK+ FQ K M +H AG ++ Sbjct: 43 GELAGLLHDGGKYSDDFQDKLKG------------------MNLNVDHSTAGAQIASELY 84 Query: 127 LSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQ 186 + L GHHG + + M + Sbjct: 85 GNRGCL-------------------LAYVSAGHHGGLPNGGSDADEASLMGRLARNLPNY 125 Query: 187 DKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDA 246 D +E + +L AD+L + Sbjct: 126 DAFYKEILLQPQLPRLNLGRSDKPGFSLSFFVRMLFSCLVDADFLDTEKFYTKEKNEIRK 185 Query: 247 PSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVA 306 Y ++ + + + + + A Sbjct: 186 KFPDIKTLNYKLEQY--------------IYKISKKAKSPIIKRERAHVRACCRQAAKKE 231 Query: 307 PGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFS 366 GL + PTG GKT ++L +A + + + VI+A+P + + Sbjct: 232 KGLFSLSVPTGGGKTLSSLEFALRHACKHGMERVIYAVPFTSIIEQNAAVFREAL----G 287 Query: 367 SPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQ 426 ++ H E + + + + + V T Q Sbjct: 288 DDAVLEHH------------------RNYDFEEDENNPNYKHRLAAENWDAPVIVTTNVQ 329 Query: 427 VLISVLPVKHRFIR-GLGIGRSVLIVDEVHAYDTYMN-GLLEAVLKAQADVGGSVILLSA 484 S+L K R I S++I+DE + L + + G +++L +A Sbjct: 330 FFESLLAYKPSRCRKLHNIANSIVILDEAQTLPDRLLLPCLAILEELLLRYGATIVLCTA 389 Query: 485 TLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEP 544 T P +KL T+ + ++ E L R +++ Sbjct: 390 TQP--HLEKLWSKELQATEIIPDSERL-------------------YEVLSKRVTVRTAG 428 Query: 545 ICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARF 604 I E + A QV I N A+ Y+ L E A Sbjct: 429 ILKD---------EELAKKLAAQKQVLCIVNTRKHARTLYKLLPEAEGN----YHLSAYM 475 Query: 605 TLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLG 664 R +K + + +++TQ++E +DVDF + D + Q G Sbjct: 476 YPKHRSDKIAEIRQRLAE----GRTCRVISTQLIEAGVDVDFPVVYRAIAGIDAIAQAAG 531 Query: 665 RLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFP 724 R +R + + +P+ +G R+ ++ + + + P Sbjct: 532 RCNREGIGGQG------EVWVFIPE-QGVPEGWF----QRMAALGEKVLHKYD--DPLSP 578 Query: 725 DAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETIL 784 A + + + + G +D+ + + ++ + + + Sbjct: 579 QAIKSFFE--------LRFDLAGEQLDELGILKDFEECASKLLFPF----------RDVA 620 Query: 785 AVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNV 833 R + + + K ++ Y D +L V + Sbjct: 621 EKFRFIDDISVPIVIAIDNECKDIIKKAAYSDNPG-GLARSLQRYTVGI 668 >UniRef50_Q57821 Uncharacterized protein MJ0376 n=3 Tax=Methanocaldococcus RepID=Y376_METJA Length = 728 Score = 323 bits (827), Expect = 2e-86, Method: Composition-based stats. Identities = 152/831 (18%), Positives = 273/831 (32%), Gaps = 123/831 (14%) Query: 73 LHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSL 132 +HDIGK FQ + K H L Sbjct: 1 MHDIGKITEGFQNNIK----------------KGKRSNKHPHPLYALPIIKNIEFDYLF- 43 Query: 133 GDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQ-DKQAR 191 V A+ HH + ++ D +++ L + K ++ Sbjct: 44 ---------------DIPIEVFAILSHHTQLYNNLYADYQQYKKGTFLIEEIKEFIKNSK 88 Query: 192 EEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDI- 250 E + S+ + F L I DIP D L W+ + + F++ Sbjct: 89 EAYESLGFSKFFEFEDLKIEDIPKDAKPLELHRLRRKYWIEANNYIKSLSFDDKIKIKSI 148 Query: 251 ----------------NALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPR 294 Y +DR+ VLE + + + + Y+P Sbjct: 149 FSFMFSILQLCDDFASLNFSEYAKDREGIFDDVLENPEIYVPTLNIDNPISFILKDYEPY 208 Query: 295 QLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAML 354 + Q + ++ AP G GKTE AL +A + + +I A+PTQ T+NAM Sbjct: 209 KFQKEL--YNSKNKFVMLFAPCGRGKTEGALLWALNALKNFKRNKIILAMPTQVTSNAMY 266 Query: 355 TRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKV 414 R+ +F N+ L HG S + + + + Sbjct: 267 DRLVK----IFGEENVGLFHGKSFIKLRDSKEIEDEDDLEEIRDENFKGNVFFK------ 316 Query: 415 FLGQIGVCTIDQVLISVL-PVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQA 473 I + TID V+ S + I SV+I DEVH Y+ Y L + Sbjct: 317 ---PITITTIDHVIYSFVHGFSQADFALGNIQNSVIIFDEVHYYEKYTLEHLLTLFDILR 373 Query: 474 DVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQ 533 + +L+S TLP L + + N + L ++ + ++ Sbjct: 374 RMDIPHLLMSGTLPNFLMNNLEGYELVVDEEGLNYKPFKLK------CSENHLIWKEDDE 427 Query: 534 LPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNT 593 +I E I G +I N V+ A+ Y+ +++ Sbjct: 428 WKVNENIINEIIEN----------------YKKGLSQAIILNTVERAREFYKAVRDKVPA 471 Query: 594 QVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQH 653 L+H++F DR +KE+ + + +N ++VATQV+E SLD+ D + ++ Sbjct: 472 ----ILYHSQFAYKDRVKKEDEIFTLEEMRKSQNKPYVIVATQVIEISLDMSVDVMYSEL 527 Query: 654 CPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHI 713 P D L QR GRLHR + +R G E + L ++H+ + ++ +T HI Sbjct: 528 SPPDALGQRAGRLHRKGKDWRENGKEYKLKIFL--------PYKHLPYSKELIEKTINHI 579 Query: 714 EELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEE 773 + + ++D++Y D + P + D+ A + + Sbjct: 580 K--FYEKPLDYRDIKDFVDNVYKDYNLSIPSDLKLFFDE-----------AILFGRHWTD 626 Query: 774 YSLQDNDETILAVTRDGEMSLPLLP-YVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVN 832 S D + V D M + ++P G+ L + + + Sbjct: 627 ISTIDEEGRFFKVRDDKFMKIEVVPQVYFDELGENSLRAEYMAKIPAYLILNEMKNEE-- 684 Query: 833 VPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMTRVI 883 + + + ++ L I Y +E ++ Sbjct: 685 -------GLIHFYPYEKRVGRKTRRYLICSFKYTYEIGFDYKEEEEFEDIL 728 >UniRef50_C7INB9 Metal dependent phosphohydrolase n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7INB9_9CLOT Length = 803 Score = 323 bits (827), Expect = 2e-86, Method: Composition-based stats. Identities = 128/870 (14%), Positives = 269/870 (30%), Gaps = 156/870 (17%) Query: 20 KGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKF 79 + + H +V +L C+ L + + + LHD+GK Sbjct: 8 EDGTEQSVREHLENV-----------SLLCAEACKKISL--ENMGRLIGL---LHDMGKE 51 Query: 80 DIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFF 139 F KS + L+P S G +H AG + + + Sbjct: 52 TEEF--KSYIIYSFLHPEDKSQRGT-------VDHSTAGAKFIYKTY-----------YC 91 Query: 140 DAAPHPYESWFPWVEAVTGHHGFILHSQDQDK-----SRWEMPASLASYAAQDKQAREEW 194 P+ + + HHG ++ D + R +Y E+ Sbjct: 92 SKNPYEKLTAQIICLVICSHHGGLIDCIDLELRDKFTLRMNTDDLQKNYDEAINNFFEDC 151 Query: 195 IS--VLEALFLT----------------PAGLSINDIPPDCSSLLAGFCSLADWLGSWTT 236 + LFL + L AD Sbjct: 152 CEMNEIHRLFLESVREIKNILSRIRLVYDKKHFVKFAMAILVKFLLSCLIDADR----YD 207 Query: 237 TNTFLFNEDAPSDINALRT--YFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPR 294 T +F+ ++D N + + + ++ L+ +S + Sbjct: 208 TYSFMESKDILDRENDIFKNCLWTGLSEHLNKKLDDLPKIS-----------KIYLLRNE 256 Query: 295 QLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAML 354 Q G+ + PTG GKT ++L YA + + D + + +P + Sbjct: 257 ISQSCKSFAKNKTGIYKLLVPTGGGKTLSSLRYALEHAREFKKDRIAYIIPFTTIIDQNS 316 Query: 355 TRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKV 414 ++ ++IL H ++ + E+ + +W Sbjct: 317 KEIKDFLDR----EDIILEHHSNLI------------MDNDSEDYKLLTERW-------- 352 Query: 415 FLGQIGVCTIDQVLISVLPVKHRFIRGLG-IGRSVLIVDEVHAYDTYMNGLLEAVLKAQA 473 I + T+ Q L ++ + +R L + S++I DE+ A + + + Sbjct: 353 -DSPIILSTMVQFLNTLFIGGTQSVRRLHNLVNSIIIFDEIQAIPIKCINMFNYAINFLS 411 Query: 474 DV-GGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPE 532 + +VIL +AT P+ K ++ PV +I+ P+ Sbjct: 412 KICNTTVILCTATQPLLSKTEM---------PVFIEENANIISNADEKFRYFKRTKVIPK 462 Query: 533 QLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELN- 591 +SIQ + E + + +I N A+ ++ + + N Sbjct: 463 IQAGGYSIQ-------------DLKELISGLMDQVNSTLIILNTKKAAKELFKAIDKENL 509 Query: 592 ----NTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFD 647 + + + R E N++ GK I V+TQ++E +++ F+ Sbjct: 510 LLPEDKKAIVFHLSTNMCPTHRIELLNKIREVLGK-----QKVICVSTQLIEAGVNISFE 564 Query: 648 WLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMW 707 ++ D + Q GR +RH + I + + E R I + Sbjct: 565 CVVRSLAGLDSIAQAAGRCNRHAESSCGNVYVIN----MDANSENVSRLLEIKTGQD--- 617 Query: 708 RTQQHIEELN------GASLFFPDAYRQWLDSIYDDAEM-----DEPEWVGNGMDKFESA 756 +T + EE N L P A ++ + ++D ++ + M S Sbjct: 618 KTLRIFEEYNQNPEAFDCDLLSPKAIDKYFEYYFNDLKLLMNYTLPKPYADKTMFDLLSE 677 Query: 757 ECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSL--PLLPYVQTSSGKQLLDGQVY 814 + Q + L ++ +T + + ++PY + ++G+ Sbjct: 678 NKQVVQDYIDRNQEKPDLMLYNSFKTAGDYFSVIDQNTVGVIVPYQKGEELIININGKCS 737 Query: 815 EDLSHEQQYEALALNRVNVPFTWKRSFSEV 844 + ++ + VN+ R+ +++ Sbjct: 738 IK-NLKKYLKEAQQYSVNLYDQEYRNLNDL 766 >UniRef50_C1QDM1 CRISPR-associated helicase Cas3/CRISPR-associated HD domain protein n=1 Tax=Brachyspira murdochii DSM 12563 RepID=C1QDM1_9SPIR Length = 764 Score = 322 bits (825), Expect = 3e-86, Method: Composition-based stats. Identities = 150/831 (18%), Positives = 291/831 (35%), Gaps = 134/831 (16%) Query: 60 KQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGP----STQMCRKFNHG 115 ++ + + HD+GK + RFQ K +S K N + HG Sbjct: 46 TEKELELIKISLETHDLGKMNSRFQKKIYKSIDKNFEFDEYNNELEKLYKELNIDEVPHG 105 Query: 116 AAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFIL-HSQDQDKSRW 174 + N + L E+ V +V HH ++ + S Sbjct: 106 ILSCAFLNINELEEKF-------------SENEIKALVSSVYNHHTRKALNNNGLEISAS 152 Query: 175 EMPASLASYAAQDKQAREEWIS---VLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWL 231 ++ + + KQ ++ + + ++ + + + ++ G + D+ Sbjct: 153 DIKKIIEKDVSFYKQYYDDKLKCKYIGVSMNVIKENYNTSYDIWKNYIIIKGMLNKIDYA 212 Query: 232 GSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGY 291 S A Y + DAS+ + + + Sbjct: 213 AS------------------AYDDYIEIGSDDASKKV-------------------LSRF 235 Query: 292 QPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATAN 351 +P + Q + L ++ A TG GKTE AL +A + LP + + N Sbjct: 236 EPNECQKYM--LENKDKNIIVIASTGIGKTEGALLWA-------KKSKTFYTLPLKVSIN 286 Query: 352 AMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSN 411 A+ R++ + + + H +S + L + + + + Sbjct: 287 AIYERIKNNY---YDKEKITFLHSDSINDMLDNDLSIDDVID--------------KYNK 329 Query: 412 KKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKA 471 K VCTIDQ+ V I + S LI+DE+ +Y + + LK Sbjct: 330 SKKLSFPFTVCTIDQLFYFVFKSLGTEIFPAALKYSKLIIDEIQSYTPEITAFIIYGLKV 389 Query: 472 QADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHP 531 D+GG +++AT P K+ + + N A Sbjct: 390 INDIGGKFCIITATFPPIVKKLMEEN----------------------NINFEMPSKAFL 427 Query: 532 EQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELN 591 ++ SI+ I D D+ + +I +A +V +ICN V +Q Y LKE N Sbjct: 428 KKDKNNESIKRHFIKFID--EDIFNYDNIIKSAE-NKKVLVICNTVKHSQEVYNILKEYN 484 Query: 592 NTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNV--GRILVATQVVEQSLDVDFDWL 649 I+L H+RF + DR++KE+ + + + + I ++TQ+VE SLD+DFD L Sbjct: 485 IKN--INLLHSRFLMKDRKKKEDDIKNFAPNDISKREETYGIWISTQIVEASLDIDFDEL 542 Query: 650 ITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATIL-LPDGEGYGRHEHIYSNVRVMWR 708 T AD L QR+GR++R R P I DG G + IY N ++ Sbjct: 543 HTDMSSADSLLQRMGRVYR----DRAYNKNEPNIFIYNTKDGYGSVYDKEIYDNSKMFL- 597 Query: 709 TQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVL 768 + +F + + +++ +YD+ + E ++ + + + + + Sbjct: 598 ------KYYDNKIFTEEDKQDFINKVYDEEILKESNYLKQIKNTLKQIK-DLPPASVDKG 650 Query: 769 QWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALAL 828 + DN + ++ + ++ + K L ++ ++ + + L Sbjct: 651 DCERLFRKIDNVTVMPSIIYNDLINEE--NNIIDEYRKLLNMDKLSKENYEKLLKKKNEL 708 Query: 829 NRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGM 879 + VP + + L +N + + Y + G+ Sbjct: 709 LKFTVPIKTYKKIKNYSGIEINLNKNINKNKIF------IVELEYDKELGL 753 >UniRef50_C0EXP0 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EXP0_9FIRM Length = 652 Score = 322 bits (825), Expect = 4e-86, Method: Composition-based stats. Identities = 125/745 (16%), Positives = 247/745 (33%), Gaps = 119/745 (15%) Query: 9 HYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLS--KQRVKAW 66 YW KS K T L+ H + L+ + L ++ + Sbjct: 5 KYWAKSDKVTT-------LVIH--------------NAALREALDKLYELGYIEKEMYEL 43 Query: 67 LLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDS 126 L HD+GK + FQ + L + ++ H L++ + + Sbjct: 44 LKIACEYHDLGKINEIFQARMKNKKLHFDLE------------KEIPHNVLSLFFVDSER 91 Query: 127 LSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQ 186 +++ P +++ + A+ HH ++ D + L + Q Sbjct: 92 VNKI-----------NPEDKKNYVRMLFAILYHH----YNSDLMRMVSSSKRQLENIFPQ 136 Query: 187 DKQAREEWISVLEALFLTPAGL--SINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNE 244 D A + + +L + + + + + + G D+ S F + Sbjct: 137 D--AFPDIQDEIYSLPIGIEEEISEVIGLKDEKAVKMKGLLHKCDYAASGHYPIEFRNDF 194 Query: 245 DAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALP 304 S + L + + + ++ + + + + + LQ Sbjct: 195 -LLSGLEYLLMQWNNPADQEKQEIQSAEEFALSEQDKNENERATVDW--NSLQYFCKEKQ 251 Query: 305 VAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEA--SAS 362 ++ A TG GKTE L + F LP + NA+ R+ + Sbjct: 252 NQN--IIVVAQTGMGKTEAGLLWIGNH-------KGFFVLPIRTAINAIYNRLRKDMLVN 302 Query: 363 HLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVC 422 + + H + S + K F + + Sbjct: 303 SDKIDEQVGILHSEQLEYYTKNIEGSDEDIYEY-------------VKRGKQFSLPLNIS 349 Query: 423 TIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILL 482 T+DQ+ + ++ + S +++DE+ Y+ + L L+ +GG V +L Sbjct: 350 TLDQLFDFIFQYPGYELKLATLSYSRIVIDEIQMYNAELLAYLIFGLEKIVKMGGKVAIL 409 Query: 483 SATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQP 542 +ATLP K+ L + + ++ ++ + Sbjct: 410 TATLPPFVKELLEQHLNI--------------------PKENQEVFIDDKKARHHIKVCD 449 Query: 543 EPICLADMLP-DLTMLERMIAAANAGAQVCLICNLVDVAQVCY---QRLKELNNTQVDID 598 + I D++ L E + + G ++ ++CN + AQ + L + + +I Sbjct: 450 KKINAEDIVKLYLKNKEACKSNPHKGNKILVVCNKIKTAQKIFDDVNELIKAKYDKEEIH 509 Query: 599 LFHARFTLNDRREKENRVISNFGKNGKR----NVGRILVATQVVEQSLDVDFDWLITQHC 654 +FH+RF DR + E +I K G I + T VVE SLD+DFD+L+T+ Sbjct: 510 IFHSRFIKEDREKLEKEIIEFGQTGNKSENVVEKGGIWITTSVVEASLDIDFDYLVTELQ 569 Query: 655 PADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPD------GEGYGRHEHIYS--NVRVM 706 L QR+GR +R K I D G E +Y + + Sbjct: 570 DLCSLLQRMGRCNRKGLKSVFESNCYIYLQIDSADLIGKTKRTGRRGKEKVYGFIDATLY 629 Query: 707 WRTQQHIEELNGASLFFPDAYRQWL 731 +++ I E G + ++ L Sbjct: 630 ELSKKAISEHEG--ILTESQKQEML 652 >UniRef50_C6QYT7 CRISPR-associated helicase Cas3 domain protein n=2 Tax=Bacteria RepID=C6QYT7_9ACTO Length = 762 Score = 322 bits (824), Expect = 4e-86, Method: Composition-based stats. Identities = 110/818 (13%), Positives = 242/818 (29%), Gaps = 121/818 (14%) Query: 69 FFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLS 128 LHD GK+ FQ S G + Q + H AG + Sbjct: 48 LLGLLHDHGKYQKSFQRYIRHSS-----------GLADQGPARAPHSMAGAIHAHSLF-- 94 Query: 129 EQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSR--WEMPASLASYAAQ 186 + GHH + S + + + + A Sbjct: 95 -------------KDRNKTLAQILAYCIGGHHRGLYDSAELENALKTADNKAYYQDMLRN 141 Query: 187 DKQAREEWISVLEALFLTPAGLSINDI-PPDCSSLLAGFCSLADWLGSWTTTNTFLFNED 245 QA + + L P + I + P +L AD L D Sbjct: 142 APQAATDLEKRIAQLGTLPNIMEIEEEDRPFFVRMLFSALIDADHL-------------D 188 Query: 246 APSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVL-VDALP 304 + +N + ++ + ++ N + LQ + Sbjct: 189 TEAFMNKEKALLRNESKKIDVSWSTLRDRLKEKTDSFAKDSPLNHARAEFLQKCRIHGSS 248 Query: 305 VAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHL 364 P + + PTG GKT +++A+A + + + +I+ +P + + Sbjct: 249 HDPSIYSLFLPTGGGKTLSSMAWALESAIRNDSSRIIYVIPYTSIITQTAE----IFKQI 304 Query: 365 FSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTI 424 F ++ H + + + +TE + I + T Sbjct: 305 FGEEYVLEHHSELDMGDNEEYDRWKLLTEN--------------------WDAPIIITTN 344 Query: 425 DQVLISVLPVKHRFIR-GLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQA-DVGGSVILL 482 Q+ S+ + R I SV++ DEV + + + + +++ + +++L Sbjct: 345 VQMFESLYASRTSRCRKLHNICNSVIVFDEVQMFPSALLNPMLRAVESLSLCFNANILLC 404 Query: 483 SATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQP 542 +AT P+ T E+++ Y + +L + E++ + Sbjct: 405 TATQPVF-------TQSFEVAGRESSNFYSIQIEIEDVVLYDKELFSAFERVRYHTFKEK 457 Query: 543 EPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHA 602 + I + + + I N A Y + L + +I Sbjct: 458 KKIAI------------LAKELHQQRTALCITNTRADAGKLYDEVVALGRNKEEIVHLSR 505 Query: 603 RFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQR 662 R++ + + I+++TQ++E +D+DF + H D + Q Sbjct: 506 MMCSLHIRKQIAYIRERLS----AGLPIIVISTQLIEAGVDIDFPVVYRAHSGLDSIIQA 561 Query: 663 LGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLF 722 GR +R R I + E + ++ + + + Sbjct: 562 GGRCNREGRLSSGD------VYIFDLEDGSKPWGEAKQGQQASILIYKKI--KDDVLNPN 613 Query: 723 FPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDET 782 P+ RQ+ Y + + ++ + + K+ ++++ L +N++ Sbjct: 614 DPELIRQYYLEYYGNQ---VNSFDKRHIEDYLWSYQAKQDLEWDFETASKKFRLIENEDI 670 Query: 783 ILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFS 842 G+ L+ L +V + + + L + K+ F Sbjct: 671 TDIYVPYGQEGEELI---------SKLSQRVLLNRKEFRILQKLRVGV------RKKDFE 715 Query: 843 EVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMT 880 + + L+ + +W Y G+ Sbjct: 716 TLHSQGV---LKEVRLGQLPIWVLTYGYPCYDEARGLK 750 >UniRef50_Q3AA66 CRISPR-associated helicase Cas3 n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AA66_CARHZ Length = 814 Score = 322 bits (824), Expect = 5e-86, Method: Composition-based stats. Identities = 140/894 (15%), Positives = 272/894 (30%), Gaps = 128/894 (14%) Query: 20 KGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKF 79 LL H +V A + F L ++ L HD GK+ Sbjct: 8 DTGAEKLLKDHLQEVTA----------SMVKKFQGLPGLDREAFLKSLKAAGLGHDFGKY 57 Query: 80 DIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFF 139 FQ + +H W + L+E G Sbjct: 58 TSYFQDHLVNKKA---------------VGPLSHHAFLSAVWASAQFLNENIEGSH---- 98 Query: 140 DAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLE 199 AV HHG + H + S+ + + A Y K E LE Sbjct: 99 ------QYLALLIFLAVLRHHGDLDHPLNNLASKRALREN-AVYNESLKNKLEILKMQLE 151 Query: 200 ALFLTPAG---------------LSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNE 244 L L P L + + + L +L L FLF Sbjct: 152 DLLLNPEIDRENQELWQKHGFKYLPLGEFTRNYQDYLGRLYTLYQDLTEEEEEIRFLFYF 211 Query: 245 DAPSDINALRTYFQDRQQDASR--VLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDA 302 + L + A + + + + + Y Q L Sbjct: 212 ATLYLYSLLIDSDKKSAAQALKEFARKELPFSVMAEYQKELSQKAEKSYVNTLRQNLFAK 271 Query: 303 LPVA------PGLTVIEAPTGSGKTETALAYAWKLID-----QQIADSVIFALPTQATAN 351 + + + APTGSGKT L A+KL + + +I+ALP + + Sbjct: 272 VISNVEKHFEGEIFSLTAPTGSGKTLAGLGAAFKLRELIAREKGYTPRIIYALPFTSIID 331 Query: 352 AMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSN 411 ++ + N IK + + + + Sbjct: 332 QNYEVIKRILETKVTD---------FPENESLYLIKHHHLADLSFRVEKEEIEVEKALLF 382 Query: 412 KKVFLGQIGVCTIDQVLISVLPVKHRFIRGLG-IGRSVLIVDEVHAYDTYMNGLLEA-VL 469 + + +I V T Q+ + K+R ++ + S++++DEV G + L Sbjct: 383 TESWESEIIVTTFVQLFHTFFGFKNRLLKKFHKLSGSIILLDEVQNIPFEYWGAVREIFL 442 Query: 470 KAQADVGGSVILLSATLPMKQK-QKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLL 528 +A + VIL++AT P+ ++ ++ G + E A Sbjct: 443 QAVKLLDCKVILMTATKPLIFSPEECIELAGTEEEIAEMFGAL----------------- 485 Query: 529 AHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLK 588 + + L + + + + ++ N + + Y+++K Sbjct: 486 -----------NRVKLSYLPEKMTIAEFVRSFKEKYSKDKSYLIVVNTIKSSIELYRKIK 534 Query: 589 ELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDW 648 EL + + + T +R ++ + ++N +LV+TQVVE +D+D Sbjct: 535 EL-DLGIPLFYLSTNITPKERSQRLLAIKQL----NQQNKPFVLVSTQVVEAGVDLDASC 589 Query: 649 LITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWR 708 +I P D + Q GR +R +K + + T EG IY V ++ + Sbjct: 590 VIRDAGPLDSVIQVAGRCNRSGQKELGEVILMNLIT-----DEGKDFATRIYGPV-LLKQ 643 Query: 709 TQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVL 768 T++ +EE A+ + + ++ G E+ A Sbjct: 644 TRELLEEAREIE---EKAFGNLIGGYFLKITAEKLLSDSQGKKTLEAILNLSFADAPDGS 700 Query: 769 QWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALAL 828 ++ L + V + + L+ + + G ++ + LA Sbjct: 701 PVISDFKLITEIPFYVDVFVELDEEAKLI-WEEYKKGVIQESDDQKRRTNYLKLKSKLAQ 759 Query: 829 NRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMTRV 882 ++VP ++++ +Q + + Y+ + G RV Sbjct: 760 YIISVPG---------LEKNQSNIRGLEQAGSFFRLPLEYLEDYYSLETGFKRV 804 >UniRef50_O27158 Conserved protein n=1 Tax=Methanothermobacter thermautotrophicus str. Delta H RepID=O27158_METTH Length = 830 Score = 322 bits (824), Expect = 5e-86, Method: Composition-based stats. Identities = 154/883 (17%), Positives = 297/883 (33%), Gaps = 124/883 (14%) Query: 16 KSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHD 75 ++ + +LL H + VA + N + + ++ +A + I +HD Sbjct: 11 RAKSNDQRNYLLKDHLKET--VARIDDFHNFYQTNREKFSYKIGEKTFRALAMASI-IHD 67 Query: 76 IGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDF 135 +GK D FQ K + P + R H + W ++ Sbjct: 68 LGKIDYNFQKKLMGDDSEAWEVLEEFLSPLKPLKRSPRHEILSIIWSTFLLGNDDLDAMM 127 Query: 136 FSFFDAAPHPYESWFPWVEAVTGHH--GFILHSQDQDKSRWEMPASLASYAAQDKQAREE 193 + A+ HH + L+ +D + + + Y + +E Sbjct: 128 RT-----------------AILLHHYNEYFLNDKDLMEIIFTYRDAFEIYLNFIIEKKET 170 Query: 194 WISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNT-------------- 239 +E + +D+ S AD + S Sbjct: 171 LRIFIEDILNYIQNSLESDL----------VISAADEIRSNMDFEKPELLLEKIKEYDDD 220 Query: 240 ------FLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQP 293 F E+ +DI L + AS +++ + ++ + + + + Sbjct: 221 ISEFAAFYEPEERSADILILSGILRRADYSASAGVDI--ELFSEEVFRDIDEKITSKIGG 278 Query: 294 RQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAM 353 Q+ + P V+ APTGSGKTE ++ +A K I+ LP + N + Sbjct: 279 APWQIRLMGELGGPKKMVLVAPTGSGKTEFSILWAAKH-----GRKFIYTLPLRVALNDI 333 Query: 354 LTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKK 413 R+ S FS + + H + +L + R ++ + Sbjct: 334 FMRLRDS-DGYFSEDEIDILHSTAFIEYLKEERLGRGTDLDSM------------MTSAR 380 Query: 414 VFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQA 473 + + T DQVLI+ L + +I+DE+ Y+ M ++ L+ Sbjct: 381 LMASPALLTTPDQVLITSLNYFGSDKVISVYPFASMILDEIQTYNEEMAAVIIKTLELVN 440 Query: 474 DVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQ 533 +V G++++++ATLP + L D A+ + N Sbjct: 441 EVDGNILVMTATLPPYFRSFLDAMNFEVMDVAAIPGAHDIKNLN---------------- 484 Query: 534 LPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNT 593 L E D L L +++ N+ V ++ N V A Y+ Sbjct: 485 LKRHVPQLIEEPLFNDELEVSDKLGKILDE-NSEKNVLIVVNNVQKAIELYRE----YQD 539 Query: 594 QVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQH 653 D+ L H+R + ++ V K + G +++TQ++E S+D+DFD +IT+ Sbjct: 540 DPDVYLLHSRLLEKVKSQRIGEV----KKRSQDERGLTVISTQIIEASVDIDFDLMITEI 595 Query: 654 CPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHI 713 D QR GR+HR+ +G P I R + + +V+ T+ + Sbjct: 596 STIDSQIQRWGRIHRNRDADYDSGD--PNIIIFTDSD----RRTSLIYDKKVLDATRAIL 649 Query: 714 EELNGASLFFPDAYRQWLDSIYDDAE------MDEPEWVGNGMDKFESAECEKRFKARKV 767 E +G + + R ++ ++ + + + + EKR +A+++ Sbjct: 650 ERYDG-QILDYNLERSMIEEVFQEEIDGSTLKEIYENQIRETISDLDYFTVEKRTQAQRL 708 Query: 768 LQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLD---GQV----YEDLSHE 820 + Y + D AV R E + +L G++ E + Sbjct: 709 FRNMAGYKVFIPD----AVLRYSESEIERTFAELIKGDYRLWKDILGEIERITGEKTTMW 764 Query: 821 QQYEALALNRVNVP---FTWKRSFSEVVDEDGLLWLEGKQNLD 860 + L VNVP +S E ++ G D Sbjct: 765 DLKKVLYEYSVNVPVFYEEKSDFWSRTTGEFKGFYVWGSMEDD 807 >UniRef50_C4ZG22 Predicted helicase n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4ZG22_EUBR3 Length = 704 Score = 321 bits (822), Expect = 7e-86, Method: Composition-based stats. Identities = 121/790 (15%), Positives = 236/790 (29%), Gaps = 162/790 (20%) Query: 20 KGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIA-LHDIGK 78 + LI H A L F + + + I LHD+GK Sbjct: 8 EEERKQRLIDHLDGTA-----------KLAGKFAESFGKYE------WGYCIGMLHDLGK 50 Query: 79 FDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSF 138 + FQ+K + +H AG+ N+ Sbjct: 51 YSKEFQHKI-----------------QFNTNDRVDHSTAGMRLCNEK------------- 80 Query: 139 FDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVL 198 + A+ GHH + D K S+ Y A ++ E + Sbjct: 81 -------GGYYSILQYAIAGHHSGL---MDYYKLEERYRKSICDYQAYRQEV--EIPQIK 128 Query: 199 EALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQ 258 F + + + +L AD+L T +F+ N Sbjct: 129 SDPFESCKTQNPHFSMGIFMRMLYSCLVDADFL----ETESFMKNNHVERTSGEEMASLL 184 Query: 259 DRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGS 318 R + + +++ NG + L+ + A GL + PTG Sbjct: 185 ARLERHIGSWLENDDLNS-----------INGRRTEILKACLIAGENDRGLFHLTVPTGG 233 Query: 319 GKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSR 378 GKT +LA+A K + + +I+ +P + + N++ H N Sbjct: 234 GKTIASLAFALKHAVRHQMEHIIYVIPYTSIIEQN----AQVFREILGQDNVLENHCNV- 288 Query: 379 FNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRF 438 + G E Q + + + V T Q S+ + Sbjct: 289 --------------DYGDSEELKPM-----QLASENWDKPVIVTTNVQFFESLFASRSSK 329 Query: 439 IRG-LGIGRSVLIVDEVHAYD-TYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLD 496 R I SV+I DE Y+ + + S++L +AT P + D Sbjct: 330 CRKIHNIANSVVIFDEAQMLPLEYLKPCIAMMENLMDFYRTSIVLCTATQPA--LDSIFD 387 Query: 497 TYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTM 556 + + + N + EQ + E + + + Sbjct: 388 QHRRYIELCPNIN----------------------EQFKFFKRVIYENLGIIEF------ 419 Query: 557 LERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRV 616 + +I + I N AQ Y++L + + R++ ++ Sbjct: 420 -DTLIERLKTEKRALCIVNTKKCAQQLYEQL-----SGDGVYHLSTSMYPKHRKKILAQI 473 Query: 617 ISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPA 676 K +L++T +VE +D+DF+ + Q D + Q GR +R + + Sbjct: 474 KERMSDKSKS---CVLISTSLVEAGVDLDFNSVYRQVAGVDSVIQAAGRCNREGIEKKEN 530 Query: 677 GFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYD 736 + + D G + + T+ +++ + + + ++ +Y Sbjct: 531 SK------VYIFDINGM---KTVPGQSLQSSITKGLLQDYH--DISNLECITEYFKRLYH 579 Query: 737 DAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPL 796 E D + N + +F+ + +E++ L + E V E Sbjct: 580 FRENDLDK--KNIIGEFKDWKY-------NFETVSEKFHLIE--ENTRIVFIPIEQEAKD 628 Query: 797 LPYVQTSSGK 806 L + + G Sbjct: 629 LLFEIKNQGY 638 >UniRef50_A9GZW0 Metal dependent phosphohydrolase n=3 Tax=Proteobacteria RepID=A9GZW0_GLUDA Length = 782 Score = 321 bits (822), Expect = 9e-86, Method: Composition-based stats. Identities = 134/887 (15%), Positives = 248/887 (27%), Gaps = 127/887 (14%) Query: 9 HYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLL 68 + S L H L VAA+A+ F + + Sbjct: 2 DIFAHSLPDDPSTERWETLRAHSLRVAALAEQ-----------FAAVFGAAHKG-----R 45 Query: 69 FFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLS 128 LHDIGK +Q C +H AG Sbjct: 46 ALGLLHDIGKCSAAYQDYIR----------------KPGPCHGPDHSTAGARAVVASYGP 89 Query: 129 EQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASY----- 183 L A+ GHH ++ D + L Sbjct: 90 LGRL-------------------LAFAIAGHHSGLMDGSGHDGPGRSLNERLDEQAYAVP 130 Query: 184 ----AAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNT 239 AR +++ + +L + AD++ + Sbjct: 131 ASDNWPDYCPARPTLQDLVDESPPVASTDYPGFATSFFVRMLFSCLTDADFIATEGY--- 187 Query: 240 FLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVL 299 + E A A DA R N + R L Sbjct: 188 --YAESAGLPPPARGGTITQAHLDAIR---------RFMKTRRRDDTPLNRLRSRILDHA 236 Query: 300 VDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEA 359 + + PGL + PTG GKT +L++A + VI+ +P + T Sbjct: 237 IGKAALGPGLFTMTVPTGGGKTLASLSFALDHAVRHGLRRVIYVIPFTSIIEQTATVFRE 296 Query: 360 SASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQI 419 + ++ ++ H N RA + EEA + + + + I Sbjct: 297 AL---GTTDGILEHHSNF-------DWDRRAPAGENDEEAEGADGLAKLRRDAENWDAPI 346 Query: 420 GVCTIDQVLISVLPVKHRFIR-GLGIGRSVLIVDEVHAYDTY-MNGLLEAVLKAQADVGG 477 V T Q S+ + R I SV+I+DEV + + L + + + G Sbjct: 347 IVTTSVQFFESLFAARGSQARKLHNIAGSVIILDEVQTLPLHLLRPCLAVLDELARNYGV 406 Query: 478 SVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPR 537 S++L +AT ++ P ++ + + + Sbjct: 407 SIVLCTATQSALRQI-------DDALPPGRKGRRAGLDIQDTHELAPEPAALYDALRRAT 459 Query: 538 FSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDI 597 + + EP+ ++ + E+M I N A + + + + + Sbjct: 460 VTWRKEPVSDGEIAARFAVREQM----------LCIVNTRAHAHDLFTAIADQDGAR--- 506 Query: 598 DLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPAD 657 RR + + K LV+T ++E +DVDF + + Sbjct: 507 -HLTTLMCPLHRRATLVAIRQDL----KNGRPVRLVSTSLIEAGVDVDFPEVWREATGLS 561 Query: 658 LLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELN 717 + Q GR +R R P PV PD + + + T+ + + Sbjct: 562 SITQAAGRCNREGRLDEPG----PVVVFETPDPADPTQPWLVRAMRPFWQATRPILRQ-- 615 Query: 718 GASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQ 777 G +A + +Y D G + + +A Y Sbjct: 616 GLDPLSLEAIHAYFRELYFQHSHDTHGHDGLDAARIGTVRY-AILEAIAQSGAGHTYPYA 674 Query: 778 DNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTW 837 TI R + + + + +Q+L + + L V VP Sbjct: 675 ----TIARAFRMIDTVMESVIIPWDETVRQMLHALDHAPVPPAGFMRRLQQYCVPVPAPI 730 Query: 838 KRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMTRVIP 884 + +++ L ++ + D +V+ + Y G+ P Sbjct: 731 R---LKLLAAGALRTVKPEAYGDRFVYLESMD--LYDARRGLKLDDP 772 >UniRef50_C3X326 Crispr-associated helicase cas3 n=1 Tax=Oxalobacter formigenes HOxBLS RepID=C3X326_OXAFO Length = 822 Score = 320 bits (820), Expect = 1e-85, Method: Composition-based stats. Identities = 120/914 (13%), Positives = 231/914 (25%), Gaps = 158/914 (17%) Query: 15 SKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIAL- 73 + L H L V L F R L + Sbjct: 7 AHIRRHDGKKQTLKDHLLSVC-----------RLTGAFARKIGLP------LSGELAGIS 49 Query: 74 HDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLG 133 HD GK+ FQ + ++P + P +Q K +H AG + + E+ Sbjct: 50 HDFGKYAETFQLYLLSANGVIDPDSDEYIDPVSQKG-KIDHSTAGAKYVWKRLEREKY-- 106 Query: 134 DFFSFFDAAPHPYESWFPWVEAVTGHHGFI-----LHSQDQDKSRWEMPASLASYAAQD- 187 +V HH + ++ +R A + Sbjct: 107 ------------PLYAQLMFLSVCSHHSGLIDCLLPDGRNGFGNRLNKKEENTHLAECES 154 Query: 188 ---------------KQAREEWISVLEALFLTPAGLSINDIPPD---------------- 216 + +EW + + T + P Sbjct: 155 KVDFAIKDWLDSISEENILKEWYRKCQNIRRTEKKFLAQEENPATVFAQYENTVFFKKGL 214 Query: 217 CSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSN 276 AD + S + N R + A ++ Sbjct: 215 LLRCFFSCLLDADRIDSA-CFEDEQYAALRKRLGNPDWPKLAGRLETALSAFSKENMIGR 273 Query: 277 KRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQI 336 + G+ + PTG GKT ++L +A + + Sbjct: 274 --------------LRRDIADACYARSRSPRGIYTLTVPTGGGKTLSSLRFAIHHVMEHQ 319 Query: 337 ADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQ 396 + +++ +P + + ++L H ++ Sbjct: 320 LERIVYIIPYTSIIEQNAKVVRDILEKDEEPGTIVLEHHSNI------------------ 361 Query: 397 EEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKH-RFIRGLGIGRSVLIVDEVH 455 W + + + T+ Q L ++ R + +VL+ DE+ Sbjct: 362 ---EPVRETWQGKLLSSNWETPVVFTTMVQFLETLFGSGTASARRMHNLANAVLVFDEIQ 418 Query: 456 AYDTYMNGLLEAVLKAQ-ADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLI 514 L L + G S +L +AT P+ P Sbjct: 419 TLPIRCVHLFCHALNFLVEECGSSAVLCTATQPLL-------------------GNVPNP 459 Query: 515 NWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLIC 574 + A +L+ +L + + + + ++ +I Sbjct: 460 AKGQLRLADDPELMPDLAELFRQLQRVRFVDHTPSPMNLEQVGDLALSEQREKGNCLVIV 519 Query: 575 NLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVA 634 N A Y+ ++ R +V S K +LV+ Sbjct: 520 NTKSWATGLYRYCS--GKNAQNVFHLSTSMCAAHRTAILEKVRSLLAK----KEPVLLVS 573 Query: 635 TQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYG 694 TQ++E +D+ F +I D + Q GR +R+ + V L E Sbjct: 574 TQLIECGVDISFQSVIRLAAGLDSILQAAGRCNRNMESGYGTVHIVRVVDGL----ENIR 629 Query: 695 RHEHIYSNVRVMWRTQQHIEELNG---ASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMD 751 R + I V R E L PD ++ S Y D + + Sbjct: 630 RLDDIREGRNVFLRVMDEYRERLQNGMGDLSDPDIIERYF-SYYFHQRQDRMAYPCDLSG 688 Query: 752 KFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSL-PLLPYVQTSSGKQ--- 807 K +S V Q + L+PY + Sbjct: 689 KKDSLLNLLGSNRNNVGSQENGMLCQSFATAAKQFAAIEAETQGILVPYGEGKDIIAQLC 748 Query: 808 -LLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQG 866 L + Q + VN+ + + + + G ++ ++ + Sbjct: 749 SLPSSDMAAQSRKRQLLKKAQRYSVNL-------YPDALQKLGNAVRRMEETGILYLLES 801 Query: 867 NSIVITYTGDEGMT 880 + Y + G+T Sbjct: 802 H-----YDSETGVT 810 >UniRef50_C9LYV3 CRISPR-associated helicase Cas3 n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LYV3_9FIRM Length = 752 Score = 320 bits (819), Expect = 2e-85, Method: Composition-based stats. Identities = 119/874 (13%), Positives = 244/874 (27%), Gaps = 153/874 (17%) Query: 16 KSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHD 75 + LL H VA +A F ++ + L HD Sbjct: 10 HLDEETGREQLLFDHLTGVADLAG-----------RFAAAFG--EEAMGRLLGL---YHD 53 Query: 76 IGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDF 135 IGK+ FQ + + +H AG L Sbjct: 54 IGKYSREFQEYLRAD-----------EAEKKRRRGRIDHSTAGAQEI-------VKLRQS 95 Query: 136 FSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWI 195 + + GHHG I + + E L ++ + Sbjct: 96 ADDEQSKRLARGMAQVMAFCIAGHHGGIPNQGTSANT-AEDGTLLGRLKRRNLPDYHAYH 154 Query: 196 SVLEALFLTPAGLSINDIPPD------CSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSD 249 L P+ L + + +L AD+L T F+ + + Sbjct: 155 EADLPQTLPPSSLLLAQAARAPLSAMLYTRMLFSCLVDADFL----DTEDFMSAGNVERE 210 Query: 250 INALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGL 309 A +R Q + E ++ + + ++ + + L Sbjct: 211 GFASVETLLERLQ--ESLEEKFSKPKTEKEKQKLQLPINEKRSALLAESIAAGKEARGSL 268 Query: 310 TVIEAPTGSGKTETALAYAWKLID--QQIADSVIFALPTQATANAMLTRMEASASHLFSS 367 + PTG GKT ++LA+A ++ +I+ +P + S Sbjct: 269 YRLTVPTGGGKTISSLAFALHYAAHAKRKRRRIIYVIPYTSIIEQNAAVFRDLL----GS 324 Query: 368 PNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQV 427 +++ H N ++ + +R + + + + V T Q Sbjct: 325 DSVVEHHQNVDYDDVQDMDMNR------------------KRLATENWDAPVIVTTNVQF 366 Query: 428 LISVLPVKHRFIR-GLGIGRSVLIVDEVHAYD-TYMNGLLEAVLKAQADVGGSVILLSAT 485 S+ + R + S++I DE Y+ L A+ + +L +AT Sbjct: 367 FESLFSNRPSKCRKLHNLAESIVIFDEAQMIPIDYLRPSLAAIEALVRHYACTAVLCTAT 426 Query: 486 LPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPI 545 P + + +R + E + + Sbjct: 427 QPP--LGQFFSADMQPLEICPALME-------NAAFFRRTKIELREETMTEEELAEELAA 477 Query: 546 CLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFT 605 QV I N+ AQ + L+E T Sbjct: 478 HE---------------------QVLCIVNVKKTAQSVFDLLREDEGT----YHLSTNLY 512 Query: 606 LNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGR 665 R + + + K +++T +VE +D+DF + + D + Q GR Sbjct: 513 PVHREQVLEEIRARL----KDGKPCRVISTSLVEAGVDLDFPCVYREINGLDSIVQAAGR 568 Query: 666 LHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPD 725 +R R+ + + + E ++ + T+ L P+ Sbjct: 569 CNREGRRS------AEESAVHVFSLEKLAKNAQL-----AAEITKNVARSFAE-DLASPE 616 Query: 726 AYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILA 785 A R++ + +YD + R + ++ + +++ D + Sbjct: 617 AIRRYFEELYD-------------------LSGKNRLDKKDIMGQSGKFAFADIADD--- 654 Query: 786 VTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVV 845 R E + QT G+ LL ++ + + V V + + E + Sbjct: 655 -VRLIEDRTKPIFIPQTEEGQALL-ARLEQGERSRSLMRKVGRYIVTVYTGYAEAPFEQL 712 Query: 846 DEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGM 879 G + + + + Y ++G+ Sbjct: 713 AAQGKIRMLDEN------LAVLVDMAVYDSEKGL 740 >UniRef50_C8W344 CRISPR-associated helicase Cas3 n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W344_DESAS Length = 744 Score = 320 bits (819), Expect = 2e-85, Method: Composition-based stats. Identities = 131/822 (15%), Positives = 269/822 (32%), Gaps = 140/822 (17%) Query: 66 WLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQD 125 L + HD+GK +FQ + + HG L + Sbjct: 42 LLHWACVYHDLGKLHFKFQDRIKGIKHH---------------PGEIPHGLLSLAMIDHK 86 Query: 126 SLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGF--ILHSQDQDKSRWEMPASLASY 183 +L + + +AV HH +++ +K + + AS+ Sbjct: 87 ALK------------NMGYDRNAIKLLYQAVAYHHDRKMPFQNEEIEKEFAGLYPNFASF 134 Query: 184 AAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSS---LLAGFCSLADWLGSWTTTNTF 240 + + + + + + + D +L G + D+ S Sbjct: 135 EYDKLPEKLKIATEINQRYFSVNKRFYEERDKDLFFEFIMLEGLLNRMDYAASAGIPVET 194 Query: 241 LFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLV 300 + + S ++ L +Q+ ++ LQ+ + Sbjct: 195 PNDFLSAS-MDELMCSWQEVDEN---------------------------TNWNDLQIYM 226 Query: 301 DALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEAS 360 P ++ A TG GKTE L + F LP ++ NA+ R+ Sbjct: 227 RNKPDKN--LIVIAQTGMGKTEAGLLWL-------GNAKGFFTLPLKSAINAIYKRISEK 277 Query: 361 ASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIG 420 + L H ++ +L Q K +I+ + + + Sbjct: 278 IVREKMDERVGLLHSDTYIKYLEQGEKDESISLDT------------YYTKTRQLSLPLT 325 Query: 421 VCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVI 480 +CT+DQ+ V + + + S +I+DEV Y + L L + G Sbjct: 326 ICTLDQLFNFVFRYRGFEQKLATLSYSKVIIDEVQMYSPELIAYLVLGLHYITRMEGKFA 385 Query: 481 LLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSI 540 +L+ATLP L + D++ P Q+ I Sbjct: 386 ILTATLPTLFLDLL----------------------------REQDIIFEPAQIFTNDII 417 Query: 541 QPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLF 600 + L + + +++ I+ G ++ +ICN + A Y +L ++ Q + L Sbjct: 418 RHSLKVLDEDINSKDIVD--ISKQYGGKKILVICNTIKSALKLYHQLAQVAGKQ-QVWLL 474 Query: 601 HARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLF 660 H+ FT DR KE+ ++ + + I VATQ+VE SLD+DFD L T+ + LF Sbjct: 475 HSHFTKEDRSIKESHIMEMGKRENTQCG--IWVATQIVEASLDIDFDLLFTELSDLNGLF 532 Query: 661 QRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGAS 720 QR+GR +R+ R E + G I + +V +++ + ++G Sbjct: 533 QRMGRCYRN----RILDMEYNCFVFTGGNKRCSGVGAFI--DKKVHNCSKESLVGIDG-- 584 Query: 721 LFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDND 780 + ++ +Y ++ ++ N + + + ++ K ++ D Sbjct: 585 IITEGQKIAMVEELYTKEKL--SDYYRNIKENIDYVKSINEYEFSKT-DVNNKFRSID-- 639 Query: 781 ETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRS 840 ++ ++P + ++ + + + + Sbjct: 640 ------------TVSVIPRGVYNKYPVEINEAINILKADYSGVDKSEARVHRASARRIIA 687 Query: 841 FSEVVDEDGLLWLEGKQNLDGWVWQGNSIVIT-YTGDEGMTR 881 V L + + ++ SI Y EG+ + Sbjct: 688 EQTVDIPFYLAQKIILKKIYINAYEQLSIAECEYNSQEGIIK 729 >UniRef50_A6TNS1 CRISPR-associated helicase Cas3 n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TNS1_ALKMQ Length = 798 Score = 319 bits (818), Expect = 3e-85, Method: Composition-based stats. Identities = 121/820 (14%), Positives = 263/820 (32%), Gaps = 132/820 (16%) Query: 63 VKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWF 122 + A LHD+GK +F + NP+ SL G +H AG + Sbjct: 36 LGATAELIGMLHDMGKQTDKFNSYI--HYSATNPSDKSLRG-------SIDHSTAGAKFI 86 Query: 123 NQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILH--------------SQD 168 + + P+ + A+ HHG ++ ++D Sbjct: 87 YDNF-----------YHTKDPYQKFTAQLISLAICSHHGGLIDCLDLNGMDRFTDRMNKD 135 Query: 169 QDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLA 228 +D E ++ ++ K + + E + ++ D AG Sbjct: 136 KDFLYEEALSNYRLEFSEMKHLNDLFNKSKEEIKAILTKVNKIDGSAKFGQFAAGML--- 192 Query: 229 DWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQ----DASRVLELSGLVSNKRCYEGVH 284 +LF+ +D + + ++ D S + V + Sbjct: 193 ---------EKYLFSCVIDADRYDTYLFMEGKESKQNIDKSDLWNELADVLEVKLKSYPK 243 Query: 285 ALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFAL 344 + + + + G+ + PTG GKT ++L YA + + + V + + Sbjct: 244 SGKIDLLREEVSIACKNFGENKTGIYQLAVPTGGGKTLSSLRYALQHAKKFNKERVFYII 303 Query: 345 PTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCC 404 P + ++ ++IL H ++ + + QEE + Sbjct: 304 PFTTIIDQNAKDIKDIL----GREDIILEHHSNL------------VVDNDQEEYKLLTE 347 Query: 405 QWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFI-RGLGIGRSVLIVDEVHAYDTYMNG 463 +W I + T+ Q L ++ + + R + S++I DE+ A Sbjct: 348 RW---------DSPIVLTTMVQFLDTLFSGGTQGVRRMHNLTNSIIIFDEIQAIPIKCIN 398 Query: 464 LLEAVLKAQADV-GGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGA 522 + + + +++ ++IL +AT P+ ++ + + + + Sbjct: 399 MFNSAINFLSNICNATIILCTATQPLLSTTEMPLKLSENPNIIP-------------DMH 445 Query: 523 QRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQV 582 ++F+ + R + + ++ + ++ V +I N + A+ Sbjct: 446 EKFEQFKRVNLIDKRTT---------EGYSAASLKDFVLDTMERVESVLIIVNTKNTAKE 496 Query: 583 CYQRLKELN-----NTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQV 637 + LK+ N Q + + R + + + G I ++TQ+ Sbjct: 497 VFNELKKANADLPPEKQYAVFHLSTGMCPSHRMKILKEMRTKLGH-----ERVICISTQL 551 Query: 638 VEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHE 697 +E +++ F I D + Q GR +RH I+ +GE R Sbjct: 552 IEAGVNISFGSAIRSLAGLDSIAQAAGRCNRHGET------TCSDVYIVNIEGESVNRLV 605 Query: 698 HIYSNVRVMWRTQQHIEELNGA------SLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMD 751 I T++ ++E L P A Q+ + + + + D Sbjct: 606 DIKEGQEC---TRRVLDEFKENPKSFDHDLLSPKAMNQYYQYYFHNRSAEMNYTLAKPND 662 Query: 752 KFESAEC-----EKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLP--LLPYVQTSS 804 + E + E L+ +T + + + + ++PY + + Sbjct: 663 DKSMYDLLSGNKEAFNAFNSRNGYKSELMLRQAFKTAGSNFQVIDQNTTGVIVPYGRGKT 722 Query: 805 GKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEV 844 L++G E EA VN+ T KR E+ Sbjct: 723 LITLINGACNLSELKEYLKEA-QQFSVNLFETDKRKLEEI 761 >UniRef50_B5YIV2 CRISPR-associated helicase Cas3 n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YIV2_THEYD Length = 728 Score = 319 bits (817), Expect = 3e-85, Method: Composition-based stats. Identities = 133/787 (16%), Positives = 250/787 (31%), Gaps = 150/787 (19%) Query: 58 LSKQRVKA---WLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNH 114 L +++K + I HD+GK + +FQ K S + P ++ + H Sbjct: 31 LDPEKIKKYDEVIKKIIYYHDLGKLNHKFQNKLGLSKKVIIPELKDID--------EIPH 82 Query: 115 GAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRW 174 L + ++ D F + + HH + + Sbjct: 83 EWLSLAFLSR--------EDKRYFHTLSTDTIHFADLVQYCIAFHHTRTKPFDKKALEKT 134 Query: 175 EMPASLASYAAQDKQAREEW-ISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGS 233 + + + + + + L G D+ S Sbjct: 135 ICHDLEKNKGLLGINHSLNFDYDIFKDIKQKIDSQKNFKNYFELLVFLKGILHKCDYTAS 194 Query: 234 WTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQP 293 ++ + D N + L G+ Sbjct: 195 ANIEPESHYSGNYEKDFN--------------------------------NWLSKKGWHL 222 Query: 294 RQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAM 353 + Q L V+ A TG+GKTE ++ + + L + N M Sbjct: 223 KPFQNEAKRLSD--KSVVLVASTGTGKTEYSMNWI-------NGQKAFYLLGIRTAVNEM 273 Query: 354 LTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKK 413 R + N+ L HG S I + EE +V+ + + Sbjct: 274 YRRFKDIF-----GENVSLLHG----------EISNIIEDDDTEERYVERIETA-----R 313 Query: 414 VFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQA 473 + V T DQ++ SV + L S +++DE+ ++ + LK Sbjct: 314 KLSTPLTVATADQLVTSVFKYNGFEMTYLTASYSKIVLDEIQSFSPDSIAAIMVFLKEVH 373 Query: 474 DVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQ 533 +G ++++ATLP K++L + + P++ + +D Sbjct: 374 RLGSKFLIMTATLPPFIKEELKELQNVEFPE-------PVLLPNKRHFITVYD------- 419 Query: 534 LPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNT 593 + + L+ + +G ++ ++CN V AQ Y LK N + Sbjct: 420 ---------------EPIDSERSLKMIDKNFKSGKKILIVCNTVKKAQQMYDMLKNFNPS 464 Query: 594 QVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQH 653 L H+R+ L DR+ KE+R N ++ I +ATQVVE SLD+DFD L T+ Sbjct: 465 -----LLHSRYILKDRKNKESRDHGIMAVNNPKHPPVIWIATQVVEASLDLDFDALFTEC 519 Query: 654 CPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHI 713 P D L QR GR R P I + + ++ RT I Sbjct: 520 SPIDSLLQRFGRCWRKREYTD----NKPNIHIFKAEDNRI-------YDKELLDRTYSLI 568 Query: 714 EELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEE 773 + + + +I+ D ++K + E KR K L + + Sbjct: 569 FNNYKNKIMDERDKQDAIFTIFKD------------IEKTKYYEKYKRNKELLELGFKAQ 616 Query: 774 YSLQDNDETILAVTRDGEMSLPLLPYVQTSSGK-------QLLDGQVYEDLSHEQQYEAL 826 + A R+ + ++P + + +L+D + E + + + Sbjct: 617 -----SKTEAEAFFRNIAFNYCVIPRLVYEENEKEIRNLIELIDNKDTEKMQRIKAKAKI 671 Query: 827 ALNRVNV 833 + + Sbjct: 672 KDFIIPL 678 >UniRef50_C6MZR6 CRISPR-associated helicase Cas3 n=1 Tax=Legionella drancourtii LLAP12 RepID=C6MZR6_9GAMM Length = 814 Score = 319 bits (817), Expect = 3e-85, Method: Composition-based stats. Identities = 119/915 (13%), Positives = 223/915 (24%), Gaps = 199/915 (21%) Query: 25 HLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQ 84 H L H DVA +A W HD+GK+ FQ Sbjct: 34 HCLEDHLRDVAQLAG-----------DKALLFNGDD-----WASLAGLWHDLGKYRPAFQ 77 Query: 85 YKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPH 144 + + + + +H AG + Sbjct: 78 HYIKGKSGY--------DPEAHIEQGRVDHSTAGALHAINELDPMG-------------- 115 Query: 145 PYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWI-----SVLE 199 + GHH + D + E +L+ Sbjct: 116 -----RVLAYLIAGHHAGLPDWSAADGGGNSTLECRLDKGKKAGYLDEILQKSIPNDILK 170 Query: 200 ALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTT----------------------- 236 T + +L AD+L + Sbjct: 171 RNKPTTKPPGGAEGLHLWMRILFSCLVDADFLDTEKFMSPEKSFQRAKWPHLDELKNCFD 230 Query: 237 --------------------TNTFLFNEDAPSDINALRTY------FQDRQQDASRVLEL 270 LF+ +D + FQ + L+ Sbjct: 231 SHMQSKLSKLPTGGAEGLHLWMRILFSCLVDADFLDTEKFMSPEKSFQRAKWPHLDELKN 290 Query: 271 SGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWK 330 + + N + LQ DA + + + PTG GKT +++A+A + Sbjct: 291 CFDSHMQSKLSKLPNSPINKIRAEILQNCRDAALTSSKIYTLTVPTGGGKTLSSMAFALE 350 Query: 331 LIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRA 390 + +I A+P + + + +I H N Sbjct: 351 HALKHNKRRIIVAIPYTSIIEQTADQYRKVFGN-----AVIEHHSN-------------- 391 Query: 391 ITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIR-GLGIGRSVL 449 + S+ + + + I V T Q+L S+ R + SV+ Sbjct: 392 --------LDPEKETAKSRLSSENWDAPIIVTTNVQLLESLFAAHTSRCRKLHNLVNSVI 443 Query: 450 IVDEVHAYDTYMNGLLEAVLKAQ-ADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENN 508 I+DE + VL+ G +++L +AT P + HT Sbjct: 444 IIDEAQLLPPQFLQPVLDVLRLLTTHYGVTLVLSTATQPAL---STIKNSFGHTVLRGFT 500 Query: 509 SAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGA 568 + +I Q + L + E + Sbjct: 501 DVHEIIKDVPALYRQLVRVKIEKPT----------------NLNERVSWESLSQRLCEHE 544 Query: 569 QVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNV 628 V +I N + + + + R + + + Sbjct: 545 SVLVIVNTRKDCRALFDLMPK------GTIHLSGLMCGEHRSSVIREIKRCL----QEGL 594 Query: 629 GRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLP 688 +++TQ+VE +D+DF + D + Q GR +R + + I +P Sbjct: 595 PVRVISTQLVEAGVDLDFPVVYRALAGLDSIAQAAGRCNREGKLKQG------RVVIFIP 648 Query: 689 DGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGN 748 ++ T + G L Y + + + + Sbjct: 649 PNSAPKGM-----LLQAEQATVSVWHKWEGNPL-DHRLYTPYFEQYF--------NIDRD 694 Query: 749 GMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQL 808 + + AE + + D+ + L+PY + + Sbjct: 695 KKKIVPLLTKDATECCIQFRTAAERFHIIDDAGIQI-----------LIPY---NDNVEK 740 Query: 809 LDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNS 868 L + +D L V V E L +G S Sbjct: 741 LINTLRKDGPDRWVLRKLQRYSVTVYEN----------ELQQLRDKGAVEEIYPGIYALS 790 Query: 869 IVITYTGDEGMTRVI 883 Y G+ V+ Sbjct: 791 SSNIYDQKTGLLSVV 805 >UniRef50_Q2NH80 Predicted helicase n=1 Tax=Methanosphaera stadtmanae DSM 3091 RepID=Q2NH80_METST Length = 795 Score = 319 bits (816), Expect = 4e-85, Method: Composition-based stats. Identities = 117/873 (13%), Positives = 264/873 (30%), Gaps = 123/873 (14%) Query: 26 LLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIAL-HDIGKFDIRFQ 84 L H L+VA + ++ + A L F I L HD K FQ Sbjct: 18 PLTEHLLNVAENSRSIFEN-----------LNIENNSFYASLSFLIGLCHDFAKCTSFFQ 66 Query: 85 YKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPH 144 + K H + + + Sbjct: 67 KHLFGI----------------ENSEKAYHSFLSAIFGYYVIKKYIKENEIKEELN---- 106 Query: 145 PYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLT 204 + HHG + + +KS + + Y + + + F Sbjct: 107 ---YPIIGYICIINHHGNLKDVYNTEKSEFNKINQIPQYLDEQIKDIKSRNISSLKEFYL 163 Query: 205 PAGLSINDIPPDCSSLLAGFCSLAD-----WLGSWTTTNTFLFNEDAPSDINALRTYFQD 259 +SI+D + + + D L D + L + + Sbjct: 164 KYNISIDDFLEEYEEIKS--VIKKDLKIIYREKRIDNYFNVLILFSVLLDSDKLDASYTE 221 Query: 260 RQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSG 319 L L ++ + ++L ++ + + + I PTGSG Sbjct: 222 TYPRQELNANLVDLYKQEKFGQYEGINEIREEAYQELTSSLENIDLNNKIYSITLPTGSG 281 Query: 320 KTETALAYAWKLI-----DQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAH 374 KT +A ++A KL ++ I +I+ +P + + + ++ + IL Sbjct: 282 KTMSAFSFALKLRRKIKNEKNIIPRIIYTMPFLSIVDQNEEVLRKILNYSNYDTSDILIK 341 Query: 375 GNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPV 434 NS + K+ Q + ++ + + +I + T Q+ +++ Sbjct: 342 HNSTSELSYVVNKNGTTKIQDDPTEKAELDVDKAEMLLEGWYSEIVITTFYQLAYTLISN 401 Query: 435 KHRFIRGLG-IGRSVLIVDEVHAYDTYMNGLLEAVLKAQ-ADVGGSVILLSATLPMKQKQ 492 K++ +R I S++IVDE + N + + L +I ++AT P K Sbjct: 402 KNKALRKFHNISNSIIIVDEAQSIPAKYNQIFKTALDYLSKKFNVWIIFMTATQPEIFK- 460 Query: 493 KLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLP 552 E++ PLI + + P+ + D Sbjct: 461 -------------ESDGILPLITN---------EQKYFDCFDRVNYVFHHTPMTIDDFK- 497 Query: 553 DLTMLERMIAAANAGAQ-VCLICNLVDVAQVCYQRLKELNNTQ-VDIDLFHARFTLNDRR 610 E+++ + + ++ N + + ++ ++ + + +++ ++ Sbjct: 498 -----EKIVDIIQENNKDIMIVLNTISSSTEIFEYIQGYFDEEGIELYYLSGNIIPKEKL 552 Query: 611 EKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHH 670 E+ ++ N +++V TQ++E +++D D + D + Q GR +R+ Sbjct: 553 ERIKKIKE-------SNNRKVIVTTQLIEAGVNIDVDIIYRDFAVMDSIIQTAGRCNRND 605 Query: 671 RKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQW 730 +K + V I L + IY + ++ T++ ++ + D + Sbjct: 606 KKEKGT-----VNIIHLINENKREYSSFIY-DSTLLRLTEELTKDYT--EISEKDFNLKI 657 Query: 731 LDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDND-ETILAVTRD 789 Y + + ++K K+ E+ L ++D E I Sbjct: 658 SKKYYTEVNNRISHDASHNLEKI--------ISTLKISNITHEFKLIEDDIEKIDVFIEI 709 Query: 790 GEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSE--VVDE 847 + + +++ + + L + V+ Sbjct: 710 NDEATE-----------------IWDKYNEIYSDKNLKNYEKKLKLKKINRQFNNYVLSI 752 Query: 848 DGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMT 880 L + + N I Y + G Sbjct: 753 PTNLIGTVNYDKFIFHVGKNDIERKYNLNTGFI 785 >UniRef50_UPI0001BC6554 ATP-dependent RNA helicase n=3 Tax=Fusobacterium RepID=UPI0001BC6554 Length = 733 Score = 318 bits (815), Expect = 5e-85, Method: Composition-based stats. Identities = 133/847 (15%), Positives = 264/847 (31%), Gaps = 164/847 (19%) Query: 49 QNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQM 108 + R L + L I HD+GK + FQ + S Sbjct: 22 RECLVRFGYLYSEEENRILREAIEYHDLGKMNEFFQKRV-----------LSQRKIKFNP 70 Query: 109 CRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQD 168 + H +Y D + + + + AV HH + Q Sbjct: 71 ELEVEHNILSIYMI-----------------DPKKYLKDEYHSILYAVLFHHRYSDVVQT 113 Query: 169 QDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLA 228 + + ++ L ++ + + P GL I+ + + G Sbjct: 114 MVERKKDIERLLQNFTS----------------YRLPMGLKISSLHTLTNQKTLGLLMKC 157 Query: 229 DWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLD 288 D+ S + + + + L+ Sbjct: 158 DYAASGNYQIEYPNDFLEEKL-----ELWSSKLGILWNDLQEF----------------- 195 Query: 289 NGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQA 348 + A TG GKTE AL + F LP + Sbjct: 196 -------------CYSHKNESIIAIADTGMGKTEAALRWI-------GNSKAFFTLPIRT 235 Query: 349 TANAMLTRM-EASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWL 407 NA+ R+ L L H S + A + + Sbjct: 236 AINAIYDRVSRDILERENLEERLSLLHSTSLEYYAKNI-------------AEEELDIFE 282 Query: 408 SQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEA 467 K + +CT DQ+ +L K ++ + S +++DE+ YD + + Sbjct: 283 YHQRGKHLSLPLTICTADQIFNFILKYKGYEMKLATLSYSKVVLDEIQMYDPSLLAAIIL 342 Query: 468 VLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDL 527 +K ++GG + +++AT P + + + + S I N Sbjct: 343 GIKTILELGGKIGIVTATFPPIVEALMKK-------EIPDFSFQKQIFHSKNN------- 388 Query: 528 LAHPEQLPPRFSIQPEPICLADMLPDLTMLERMI--AAANAGAQVCLICNLVDVAQVCYQ 585 I+ I + M++ + ++ ++CN + AQ Y Sbjct: 389 -----------VIRHNLISYDKRMGTEEMIDLFLRNKKIGKSNKILVVCNTIKDAQAMYD 437 Query: 586 RLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVD 645 L E + L H+RF DR KE +++ K N I ++TQ+VE SLD+D Sbjct: 438 TLLEQEELSPYLHLLHSRFIKEDRARKEKEILAFGKTEIKENG--IWISTQLVEASLDID 495 Query: 646 FDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGR---HEHIYSN 702 FD+L T+ LFQR GR +R +K + + L EGY + + + + Sbjct: 496 FDYLFTELQDLSSLFQRFGRCNRKGKKS----TKEANCYVYLKTEEGYLKEAGSSYGFID 551 Query: 703 VRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRF 762 + +++ + G + +W++ ++++ ++ D E + Sbjct: 552 KVIYHLSREALLGHTGE--ISEELKTKWIEEFLSYEKLEQSSFLSEFRDAIEEYKNI--- 606 Query: 763 KARKVLQWAEEYSLQDNDETILAVTRDGE-MSLPLLPY-------VQTSSGKQLLDGQVY 814 L ++ T +TR + ++ ++P + ++ L Sbjct: 607 -------------LNSSENTSEELTRLRDIQNVTVIPLPVYQKHEEEIRDLEENLKNSEM 653 Query: 815 EDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVIT-Y 873 + E + + V VP ++ + + +DG + ++ ++ I+ Y Sbjct: 654 TKEEKLRFKEEIMKHTVTVPKYMLENYKKAL-QDGNVDCMPVSSVKISNYEKVIILECLY 712 Query: 874 TGDEGMT 880 G Sbjct: 713 DSQRGFQ 719 >UniRef50_Q0SUG1 CRISPR-associated helicase Cas3 domain protein n=4 Tax=Bacteria RepID=Q0SUG1_CLOPS Length = 736 Score = 318 bits (814), Expect = 7e-85, Method: Composition-based stats. Identities = 136/834 (16%), Positives = 278/834 (33%), Gaps = 164/834 (19%) Query: 58 LSKQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAA 117 ++K+ + HD GK + FQ + ++ H Sbjct: 46 INKESIYNLTKIACEYHDYGKVNREFQNRIKNETKF-------------NEKKEIAHNVL 92 Query: 118 GLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMP 177 LY+ N D E + ++ AV HH + Sbjct: 93 SLYFINPDDFEE----------------EKDYYRVCFAVLYHH----------YYCDGLK 126 Query: 178 ASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTT 237 + E L+ G +D D + L+ GF + D+ S T Sbjct: 127 VLSEKTDLIENLLSEFETYELDEFTPMEIGDIKSD---DEAILIKGFLNKCDFSASGNTE 183 Query: 238 NTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQ 297 + N S L ++ D ++ L+ Sbjct: 184 IEYKNNFLEESLERLLNSWKIDNKEAKWNELQQF-------------------------- 217 Query: 298 VLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRM 357 A ++ A TG GKTE L + + F LP + NA+ R+ Sbjct: 218 ----AKNNRDNNIMVVAQTGMGKTEAGLHWI-------GNNKGFFILPLKTAINAIYDRV 266 Query: 358 EASASHLFSSP---NLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKV 414 ++ + L H +S ++ Q+ + + + +E K Sbjct: 267 SNGIVKENNNEEKHKVALIHSDSLSYYISQNEDTNIVLDHHREG--------------KQ 312 Query: 415 FLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQAD 474 I + T+DQ+ V K ++ + S +++DE+ Y + L +K Sbjct: 313 LSIPISIATLDQIFDFVFKYKGYEVKLATLSYSKVVIDEIQMYSADLLAYLILGIKTIIR 372 Query: 475 VGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQL 534 +GG V +L+ATL K LL E+N+ + VN +R +L + +++ Sbjct: 373 LGGKVAILTATLAPFVKDLLL----------EDNNKLGFVEGTFVNELKRHNLKIYDDKI 422 Query: 535 PPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQ 594 + ++ ++CN + AQ Y LK+ N Sbjct: 423 NADVIYNKYIDNKEKKIS---------------NKILVVCNTIKKAQEIYNELKDKNIDN 467 Query: 595 VDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHC 654 ++I H++F DR KE +++ FGK G I ++TQ+VE SLD+DFD+L T+ Sbjct: 468 LNI--LHSKFIKRDRAYKEEQILE-FGKTNNIGDG-IWISTQIVEASLDIDFDYLFTELS 523 Query: 655 PADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIE 714 + LFQRLGR +R K ++ L + + + + ++ +++ + Sbjct: 524 DINALFQRLGRCNRKGVKP---AYDYNCYVFLQIERNLLTNGDKGFIDKKIYELSKEALR 580 Query: 715 ELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEY 774 ++G L + ++ + ++ + + Sbjct: 581 NVDG--LLSEEEKVNIINRTLTTENIKGSDYWSKYTE---------------FFDYVSGL 623 Query: 775 SLQDNDETILAVTRDGEMSLPLLPYVQTSSGK-------QLLDGQVYEDLSHEQQYEALA 827 + + D+ + + S ++P + ++++ + + ++ + + + Sbjct: 624 NPYEVDKKDVKLRNII--SFDIIPQCIYEKNESEIESLLEIINDEKTDKINRIKSIDKIK 681 Query: 828 LNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMTR 881 V+V + E++ ++ L + ++ + + G TR Sbjct: 682 SFTVSV----GQYDIELLKNKLIMEL------EVGKYERIPVYKCNYSELGFTR 725 >UniRef50_B2RM87 Probable CRISPR-associated helicase Cas3 core n=1 Tax=Porphyromonas gingivalis ATCC 33277 RepID=B2RM87_PORG3 Length = 706 Score = 317 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 134/812 (16%), Positives = 257/812 (31%), Gaps = 150/812 (18%) Query: 4 FKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRV 63 H + KS + L+ H DVA A+ LS Sbjct: 1 MSRYEHIFAKSDGT--------PLLQHLQDVAKAAEVMAQHW-----------GLSTDMA 41 Query: 64 KAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFN 123 + LHDIGK FQ + F H A +++ + Sbjct: 42 RKG----AHLHDIGKASPIFQSRLK--------------AEDNLGGDVFRHEIASIFFIS 83 Query: 124 QDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILH---SQDQDKSRWEMPASL 180 +E + HH I + Sbjct: 84 LL------------------PDEVDRRAIIEMIAAHHKSICNDSRELGLLDLDENESRCF 125 Query: 181 ASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTF 240 ++ +Q +E + +L L +++++ + + SL Sbjct: 126 KLHSKGFEQWSQEALGILHELGWETHPITMDEARSNYQEAVDYCSSL------------- 172 Query: 241 LFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLV 300 + + L+ + ++ + + + + Sbjct: 173 -------GRNCSQWKGLLMAADHFASSLDGQTEDTLRKLFVTPDLSYYRNRRSELYPLSL 225 Query: 301 DALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEAS 360 + T++ APTG+GKT + ++ V + LP QA+ NAM R++A Sbjct: 226 LSADDERQHTLVTAPTGAGKT--------DFLLRRCRGRVFYTLPFQASINAMYDRLKAD 277 Query: 361 ASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIG 420 + + A + N ++ I SR + I Sbjct: 278 LRDTDAQIYPLHAASILKLNGGYERILSRHVG------------------------ASIK 313 Query: 421 VCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVI 480 V T Q+ +K + L I +I+DE+H Y ++ +++ +G + Sbjct: 314 VLTPHQIAALAFGLKGYEVTALDIRGCDVILDEIHTYRKETQAMVLKIVEILVALGCRIH 373 Query: 481 LLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSI 540 + +AT+P LL G T E ++ + + + E + Sbjct: 374 IGTATMPTDLYTGLLRLLGGETAVYEVKLPKEVLKGFDRHTIHKAGSMEDVEPV------ 427 Query: 541 QPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLF 600 + A ++ ++CN V AQ YQ + + L Sbjct: 428 -------------------IQKAIEQSQKILMVCNQVKRAQQLYQEVVGKYPA-IPTLLI 467 Query: 601 HARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLF 660 H+RF R + E + + + I+V+TQVVE SLD+ FD ++T+ P D L Sbjct: 468 HSRFKRGHRAQLELELKERYNQCQ---GPCIVVSTQVVEVSLDISFDMMLTECAPIDALI 524 Query: 661 QRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGAS 720 QR GR++R R G P+ I P+ E E + + ++ R+ + Sbjct: 525 QRFGRINRK-RSLETIGQTKPIYVIAPPENEK----EALPYELEILQRSYSSL---PHCE 576 Query: 721 LFFPDAYRQWLDSIYDD---AEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQ 777 + +Q LD++Y + +++ +G + + + K+L + Sbjct: 577 VLHEADVQQLLDAVYPEVMALDINMHTIFQDGEWVMKELKHNSKSALFKILDINSACCIM 636 Query: 778 DNDETILAVTRDGEMSLPLLPYVQTSSGKQLL 809 ++D + +P Q+ KQL+ Sbjct: 637 ESDREEYENGNYINRTPLEIPVPQSIRFKQLV 668 >UniRef50_Q2LX11 ATP-dependent RNA helicase n=3 Tax=Proteobacteria RepID=Q2LX11_SYNAS Length = 835 Score = 316 bits (810), Expect = 2e-84, Method: Composition-based stats. Identities = 117/874 (13%), Positives = 253/874 (28%), Gaps = 134/874 (15%) Query: 27 LIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYK 86 L H VA +A + + M + + LHD GK+ FQ Sbjct: 28 LEEHLWGVAELA----------KAHAEKISMGNYGEL------MGLLHDFGKYSSEFQKY 71 Query: 87 SAESWLK----LNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAA 142 ++ K NP T K +H AG + + + S + Sbjct: 72 IKDAIRKNDPQFNPDEDEDFEDPTVKKGKIDHSTAGAQFLGRKNGSSNAH---------- 121 Query: 143 PHPYESWFPWVEAVTGHHGFILHSQDQDK------------SRWEMPASLASYAAQDKQA 190 + HH +++ D D Sbjct: 122 ---KLLGQFLSLCLVSHHSGLINCLTTDNDGTWDSYSKRLSKNDHKTHLEECATNADHCI 178 Query: 191 REEWISVLEA-LFLTPAG-------LSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLF 242 E +L LF P LS D P + + L L S + Sbjct: 179 LERIDGILADTLFTKPFEEMCREILLSSPDKNPFSTVIQFQLGLLTRILFST-----LID 233 Query: 243 NEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDA 302 + + + Q RQQ R + + V + + + + A Sbjct: 234 ADRQDTADSERSKSVQHRQQGMYRSWDTLIERIESKYKTFVTKNHVDKIRKEVSEHCLRA 293 Query: 303 LPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASAS 362 GL + PTG GKT +L +A + D +I+ +P + + Sbjct: 294 AKRPEGLFTLTVPTGGGKTLASLRFALHHAKEHSMDRIIYVIPFTTIIDQNAQDVREILE 353 Query: 363 H---LFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQI 419 + ++L H ++ W + + + + Sbjct: 354 PKECPEDAGKIVLEHHSNI---------------------GADVQSWKEKLITENWDAPV 392 Query: 420 GVCTIDQVLISVLPVKHR-FIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADV-GG 477 T+ Q L +V R R + ++V++ DE+ + V+ + G Sbjct: 393 VFTTMVQFLETVFGAGTRGARRMHQLAKAVIVFDEIQTLPIKCVHMFNNVINFLVNQCGS 452 Query: 478 SVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPR 537 +V+L +AT P+ +D E N P ++ + + + Sbjct: 453 TVVLCTATQPLLGS---VDVKKGTLKLTEENELMPDVDKLFADLKRVY------------ 497 Query: 538 FSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDI 597 + + I ++ N+ A++ ++ ++ N + Sbjct: 498 ----VHDYRKSAGWSYPEIAALAIEQVKKDGSCLVVVNIKKAARLIFEEVQ---NPDFEA 550 Query: 598 DLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPAD 657 R++ + + + ++TQ++E +++DF +I D Sbjct: 551 FHLSTGMCPTHRKKTLKAIHRKLAE----KEPVLCISTQLIEAGVNIDFRSVIRMLAGLD 606 Query: 658 LLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELN 717 + Q GR +RH + I+ P E + I ++ + +++ Sbjct: 607 SITQAAGRCNRHGSSELGS------VFIVNPAEENLEFLKDIAVGK---EKSNRVLDDYR 657 Query: 718 GASLFFPDAY--RQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKAR--------KV 767 + + L+ Y + + + + + + + +V Sbjct: 658 DNPSKYDSDVIGPKMLEWYYQNYFYERKDAMDYPVYAGRNDSLLNLLSSNSNVVSEYGRV 717 Query: 768 LQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDG--QVYEDLSHEQQYEA 825 + E L+ + T + + + + GK+L++ +E + Sbjct: 718 QKILPEIFLRQSFMTAAKLFKSIDAPTRSVLVRYGDEGKELVNQLCAAFEVDKQYALIKK 777 Query: 826 LALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNL 859 VN+ + F ++ +D L ++ + Sbjct: 778 AQQYSVNL---FPYEFEKLAVQDALYRVQEDTQI 808 >UniRef50_A7GQ88 CRISPR-associated helicase Cas3 n=1 Tax=Bacillus cytotoxicus NVH 391-98 RepID=A7GQ88_BACCN Length = 741 Score = 316 bits (810), Expect = 2e-84, Method: Composition-based stats. Identities = 146/849 (17%), Positives = 283/849 (33%), Gaps = 147/849 (17%) Query: 39 DCWWDQSVVLQNTFCRN----EMLSKQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKL 94 + + + L++ + + +R+ LL+ + HD GK FQ + Sbjct: 10 ETLREHTDELRSRYKKLKESYGHYFDERIWELLLYAVDYHDAGKAHEPFQLNIRRALG-- 67 Query: 95 NPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVE 154 G Q + H + + S P + + ++ Sbjct: 68 -------EGVKLQRNLEVPHNYLSPFLLPESIFS---------------LPKKDYQALIQ 105 Query: 155 AVTGHHGFILHSQDQDKSRW-------EMPASLASYAAQDKQAREEWISVLEALFLTPAG 207 A+ HH + D + +M +++ +L L Sbjct: 106 AIAYHHERDIEPNDTLIRQALWQDLWPKMDEINKHLNINGANLEKKFNRILAQLHRRIKY 165 Query: 208 LSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRV 267 + D +L G D S +I+A + + + ++ Sbjct: 166 SDNKENYVDY-VILKGLLHRIDHAASA----------HVDIEIDAKQDFKKLVDAGFQKI 214 Query: 268 LELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAY 327 E + + R LQ +I A TG GKTE AL + Sbjct: 215 AEKKRVPVEEVY--------------RDLQKHAHKH--RKENLIIVAQTGMGKTEAALLW 258 Query: 328 AWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIK 387 A F LP + + NA+ R+ ++ N+ L H +S Sbjct: 259 ASD-------SKTFFTLPLRVSINALFHRVYEKMNY----KNVGLLHSSSM--------- 298 Query: 388 SRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRS 447 + EE W + K F ++ TIDQ+L + + S Sbjct: 299 --DYLTENLEEDWEVIAE-----QSKHFSSKLLFTTIDQILKFPFLYRGYEKELATMAYS 351 Query: 448 VLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVEN 507 +++DE+ AYD + +L L+ VGG +L++ATLP + L Sbjct: 352 SVVIDEIQAYDPKIAAVLVRALEMIYLVGGKFLLMTATLPSIYLETL------------- 398 Query: 508 NSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAG 567 N + + F + + R I+ + D E+++ Sbjct: 399 -------NESDIISSDGFRVDTFIDDCVIRHCIEVVEKPIVDDF------EKIVDLGKQ- 444 Query: 568 AQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRN 627 ++ +I N V A Y ++KE ++ ++ +FH+ + R E ++ + + Sbjct: 445 KKILVIANTVKRAMELYNKIKEYSD---NVHVFHSMYIQKHRTLIEKELLLF---DENKE 498 Query: 628 VGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILL 687 I + TQ+VE S+D+DFD L T+ D L QR GR +R + + P I Sbjct: 499 ATGIWITTQLVEASIDIDFDVLFTEAATLDSLCQRFGRCYRRRQYMM---HQEPNVFIYA 555 Query: 688 PDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVG 747 D G +++Y + ++ ++ + N + + + +Y + E++ Sbjct: 556 VDMSGV---KYVY-DEEILMKSLDILRPFN-RKILLESQKIELVSQLYSRENLKGTEFLK 610 Query: 748 NGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQ 807 D E LQ E+Y+L D + RD + L ++P + Sbjct: 611 TFDDALEQ------------LQTFEDYTLSSKD--AQKLLRDIQAEL-VIPRNIYDENEH 655 Query: 808 LLDG-QVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQG 866 L + ++ + Y +A V++ R + + + + K NL W+ + Sbjct: 656 LFEQLKIVNKEERARLYREIAKLTVSLRKNRVRGKTSRIPHERIQSNGKKYNLLPWI-KI 714 Query: 867 NSIVITYTG 875 + + Sbjct: 715 LELQYDFDE 723 >UniRef50_B9MPU0 CRISPR-associated helicase Cas3 n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MPU0_ANATD Length = 807 Score = 316 bits (810), Expect = 2e-84, Method: Composition-based stats. Identities = 137/898 (15%), Positives = 268/898 (29%), Gaps = 147/898 (16%) Query: 26 LLIYHCLDV---AAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIR 82 LL H L+V A A+ L HD GKF Sbjct: 12 LLYDHLLEVYHYAMEANVELKSWEKEA-----------------LQIICLCHDFGKFTTF 54 Query: 83 FQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAA 142 FQ S + HG + + ++ L A Sbjct: 55 FQSHL-----------------SGVSSKHSQHGFLSAIFGVFCWMQKKGLC-LQKMNSPA 96 Query: 143 PHPYESWFPWVEAVTGHHG--------FILHSQDQDKSRWEMPASLASYAAQDKQAR--- 191 + HHG K+ + + Q + R Sbjct: 97 SLDEVISLLIYACILHHHGDAKDISKNLPEKFAGDFKADINLVQKIDDAYVQIEDLRCNA 156 Query: 192 EEWISVLEAL--------FLTPAGLSINDIPPDCSSLLAGF----CSLADWLGSWTTTNT 239 E+ +LE + FL I DI + G + Sbjct: 157 EDIKPLLEKIGLGNKFEKFLAQQRGFIEDILRYLKKIEYGIRFIGLIPQAFKDGTELYFV 216 Query: 240 FLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQP-RQLQV 298 + + L+ + +K L Q + + Sbjct: 217 QQKLYSLLIWADKMSAANYKVLSPCYASLDRLIVARDKVIKPTQDKNLHRIRQSVFEAVL 276 Query: 299 LVDALPVAPGLTVIEAPTGSGKTETALAYAWKLID-QQIADSVIFALPTQATANAMLTRM 357 + I PTG+GKT + A KL + + + +I+ALP + + + Sbjct: 277 SNIEKNKEKDIFSITTPTGTGKTLAGVFAAVKLKEILKKSGRIIYALPFTSIIDQNYDVV 336 Query: 358 EASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNK----- 412 + + G +R +L + + +G+E A + ++ K Sbjct: 337 KNLFETIEDF-------GKNRDRYLLKHHHLTDVEFRGKEGALKEITDEITVFEKVASEC 389 Query: 413 --KVFLGQIGVCTIDQVLISVLPVKHRFIRGLG-IGRSVLIVDEVHAYDTYMNGLLEAVL 469 + + V T Q+L +++ ++R ++ SVL++DE+ A D + L+E VL Sbjct: 390 FIENWTSGFVVTTFVQLLETLISNRNRMLKKFHAFYDSVLLLDEIQAIDVELLPLVEEVL 449 Query: 470 KAQADV-GGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLL 528 + + +IL++AT P+ + L + + R L+ Sbjct: 450 RKLTQLFRCKIILMTATKPLIFEDA-----------------CELAGFCDYSIFNRTKLM 492 Query: 529 AHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLK 588 H L + ++ N ++ + Y +K Sbjct: 493 YHHSDLKVAEFVDFFS----------------EDIYEDEKSFLIVANTINQSHQIYNGIK 536 Query: 589 ELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDW 648 ++ A DR++ ++ K I+V+TQV+E +D+DFD Sbjct: 537 NNLK-NKEVIYLSASLVPKDRKDIIKKIEKMLESGAKP----IVVSTQVIEAGVDIDFDC 591 Query: 649 LITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWR 708 +I P D + Q GR +RH+ K + V + + D G + +Y N + Sbjct: 592 VIRDIAPIDSIIQCAGRCNRHNEKSQG-----NVLVVNMKDESGITFAKRVYGNTAI-EI 645 Query: 709 TQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVL 768 ++ + + Y +D+ + M + ++F A +F + Sbjct: 646 SRGLLLKHPEVE---EKDYGMLIDNYFR---MIKENKSFKKSEEFLKAIRLLKFDSILEK 699 Query: 769 QWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQ--LLDGQVYEDLSHEQQYEAL 826 + L R G +S+ + + + + + + + Y L Sbjct: 700 EELTISRFS------LIQQRGGYVSVIIRNNQEIEDTYEKYINSFSIKDYYKRREIYLEL 753 Query: 827 A----LNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMT 880 ++VP + + F +E G+L L + Y ++ + Sbjct: 754 KNILFEYTISVPVKYAQIF---DEEKGILSL---PPTSCERYYSPETGFVYDPNDNVI 805 >UniRef50_C0EDE1 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EDE1_9CLOT Length = 796 Score = 314 bits (803), Expect = 1e-83, Method: Composition-based stats. Identities = 136/845 (16%), Positives = 239/845 (28%), Gaps = 119/845 (14%) Query: 60 KQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGL 119 +K LHD+GK+ +F+ + + NH A + Sbjct: 36 PDGLKQLCYLAGLLHDMGKYTEKFKVYITAAARGESV-----------RRGSVNHTFASV 84 Query: 120 YWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFIL--------------- 164 + + + A HHG Sbjct: 85 RFIFNRWHRDSGQTLHNM----------TAELLAFACGSHHGQFDCVSLEGKDGYLHRLE 134 Query: 165 -HSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAG 223 D +++ AS D+ E V+ A L + + SL+A Sbjct: 135 AEGVDYEEAIENYLRYCASPEELDRLFEEAEQEVVRAQELLFSCSKTKEEIYFYFSLIAR 194 Query: 224 FCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGV 283 A G T F P + L Sbjct: 195 MALSAVIEGDRRDTAEFDQGHALPQ--QETEPDWDALLSRVEEKLSDF-----------R 241 Query: 284 HALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFA 343 N + + +A G+ + PTG GKT + L YA + V F Sbjct: 242 ADSEINRARKHISDLCREAASRGGGIFRLNVPTGGGKTLSGLRYALARAAE-GQQRVFFV 300 Query: 344 LPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQC 403 +P + + + P LIL H ++ + + E+ E V Sbjct: 301 IPLLSILDQNAKEIRKYLE----DPKLILEHHSNVM----REKPDKKEIEELDETELVL- 351 Query: 404 CQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGL-GIGRSVLIVDEVHAYDTYMN 462 + + + + T+ Q+L ++ K IR + + SV+++DEV + M Sbjct: 352 ---------ENWRAPVVITTLVQLLNTLFDGKTSCIRRMTALCGSVIVIDEVQSVPRKML 402 Query: 463 GLLEAVLKAQADV-GGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNG 521 L A G +V+L SAT P + G+ Sbjct: 403 SQFNLALNFLATFCGATVVLCSATQPCLDQ-----------------------TDHGLRY 439 Query: 522 AQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQ 581 A++ +L+ + E L R + E L L + + V +ICN A+ Sbjct: 440 AEQPELVPYDETLW-RVFRRTELTDLRKSLTVEELAAFALERQQEAGSVLVICNTKSEAK 498 Query: 582 VCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQS 641 ++ ++ + R + + K + + V+TQ+VE Sbjct: 499 RIFEAIRSQY--SGLLYHLSTSMCTKHREQTLEGIKDALNP--KSPIPVLCVSTQLVEAG 554 Query: 642 LDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIY- 700 +D F +I D + Q GR +R R I+ GE GR I Sbjct: 555 VDFSFGCVIRIAAGMDNVVQAAGRCNRSGEFGRICP-----VYIVRLRGENLGRLPEIRQ 609 Query: 701 --SNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAEC 758 M Q + +A + + +Y + ++ + Sbjct: 610 AQQAAECMLLQFQQNPQKFDCDPTGREAIKTYYQDLYAEMTQGSQDYPLPKLKTSLFQLL 669 Query: 759 EKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSL--PLLPYVQTSSGKQLLDGQVYED 816 +A A Y L T R E + + PY + + L Q Sbjct: 670 SCNGQAEGHCDTASRYLLVQGFRTAGEQFRVFEDNTVDVVTPYGEGKKLIEALGSQFAAW 729 Query: 817 LSHEQQYEALALNRVNVPFTWKRSF-SEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTG 875 E+ L + + ++ D G+ L G + L Y+ Sbjct: 730 NLEER--RKLLRDASRFTISLYEYERKKLADCGGIYSLYGGEILVLQ-------PGFYSD 780 Query: 876 DEGMT 880 G+T Sbjct: 781 QTGLT 785 >UniRef50_C8WIK3 Metal dependent phosphohydrolase n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WIK3_EGGLE Length = 732 Score = 313 bits (802), Expect = 2e-83, Method: Composition-based stats. Identities = 119/811 (14%), Positives = 232/811 (28%), Gaps = 163/811 (20%) Query: 19 TKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIAL-HDIG 77 + I + H +VA +A F R + + HDIG Sbjct: 7 AEDGRIEEVADHLREVAEMA-----------AEFARPFGAES------WAYAAGMAHDIG 49 Query: 78 KFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFS 137 K+ FQ + K +H AG Sbjct: 50 KYSTEFQNRI------------------LCDGHKVDHSTAGAA----------------- 74 Query: 138 FFDAAPHPYESWFPWVEAVTGHHGFILHS---QDQDKSRWEMPASLASYAAQDKQAREEW 194 V GHH + D + L + Sbjct: 75 -----LLDQLGLKLLAYCVAGHHAGLPDGGTTADVEDCPTLRGRLLRAQHGSIPDCAAYA 129 Query: 195 ISVLEALFLTPAGLSINDIPPD-------CSSLLAGFCSLADWLGSWTTTNTFLFNEDAP 247 V + P+ L ++ D + ++ AD+L + + + Sbjct: 130 REVELNVPKGPSVLPVSRDREDGAYSLSFLTRMVFSCLVDADFLCTERFMQGEGRDPLSE 189 Query: 248 SDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAP 307 +++L G + + N + + L + A P Sbjct: 190 -----------------QSLVDLLGCLKEEVARFYPPTSALNETRCQVLDACIRAASNHP 232 Query: 308 GLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSS 367 G + PTG GKT +L +A + ++ A V++A+P + Sbjct: 233 GFFSLTVPTGGGKTYASLLFALEHAVKRDARRVVYAVPYTSIIEQNARVFRDVL----GE 288 Query: 368 PNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQV 427 +++ H N F+ ++ E + + + + I V T Q Sbjct: 289 RSVLEHHANFDFDF-----------DEEVESYKSGDAKKALRRASENWDAPIVVTTNVQF 337 Query: 428 LISVLPVKHRFIR-GLGIGRSVLIVDEVHAYDTY-MNGLLEAVLKAQADVGGSVILLSAT 485 S+ + R I SV+++DE T + L A+++ A+ G SV+L +AT Sbjct: 338 FESLYANRTSRCRKLHNIANSVIVLDEAQMVPTKQLLPCLRALIELVANYGCSVVLCTAT 397 Query: 486 LPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPI 545 P G G ++ P +L + Sbjct: 398 QPAF------------------------NGMLGRKGFAVREIAPAPSELFKKLK--RVSY 431 Query: 546 CLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFT 605 +L D + R+ + I N A+ ++ L D Sbjct: 432 RFDGVLGDDDLAARLADRDQS----LCIVNSRKQARRLHELL-----DGEDSYHLTTLMH 482 Query: 606 LNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGR 665 R N + + +VAT ++E +DVDF + D + Q GR Sbjct: 483 PVHRERVLNEIRQRL----REGRTCRVVATSLIEAGVDVDFPVVYRALAGVDSMVQAAGR 538 Query: 666 LHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGA-----S 720 +R R+ E + + P + Y + V + + I E+ GA Sbjct: 539 CNREGRQS----AEESIVHVFEP-ADDYALPSDVAQKVAI---ARSVISEMEGAACESCD 590 Query: 721 LFFPDAYRQWLDSIYD--DAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQD 778 + +A + +Y + +D + + + + A+++ + + Sbjct: 591 IGALEAIDAYFARLYAVREGALDASGVLRDL------EGFSLKSLNIPFKRAADDFRMIE 644 Query: 779 NDETILAVTRDGEMSLPLLPYVQTSSGKQLL 809 + + D E+ +L + + + Sbjct: 645 EGSRTVVIP-DPEIESDILAVKTGFANRSTI 674 >UniRef50_Q3ARV3 CRISPR-associated helicase Cas3, core n=1 Tax=Chlorobium chlorochromatii CaD3 RepID=Q3ARV3_CHLCH Length = 824 Score = 313 bits (801), Expect = 2e-83, Method: Composition-based stats. Identities = 118/902 (13%), Positives = 255/902 (28%), Gaps = 189/902 (20%) Query: 9 HYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLL 68 + + + + + L H L A L + + + L++ Sbjct: 7 KLYAHTLEGVKNKSQWQTLREHALSTA-----------HLASDYATSFGLAE------CG 49 Query: 69 FFIAL-HDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSL 127 +++ L HD+GK +FQ + + K +H AG + Sbjct: 50 YWLGLIHDLGKSLPQFQQRLED------------------DRVKADHKHAGGLFLWDK-- 89 Query: 128 SEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQ------------------ 169 + + + V HHG ++ +Q Sbjct: 90 ----------LNNGTKPSHLAAQCLALCVISHHGGLVDCLNQLGEDNFINTIENKLYQAN 139 Query: 170 ---DKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPD---------- 216 ++ L + AR ++ F + P + Sbjct: 140 LKDSLENLQLDTELEDNIKKISGARSLVQDEIDFFFQNILQQAKKYWPTEDDKNKRKKLE 199 Query: 217 ------CSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLEL 270 + +L AD + +E+ + + + + R LE Sbjct: 200 LFRIGLMTKMLFSCLIDADHTDTAN-----FHDEERKNKNLPHLPKWDELRDMVERYLET 254 Query: 271 SGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWK 330 S+ + + R + A G ++ PTG GKT ++ +A Sbjct: 255 LPQTSS-----------VDIERKRISDKCIQASVCESGTYLLTVPTGGGKTLASMRFALH 303 Query: 331 LIDQQIA----DSVIFALPTQATANAMLTRMEASASHLFSS----PNLILAHGNSRFNHL 382 + +I+ +P + + ++ +H N N Sbjct: 304 HAVNREPYIPFKRIIYVIPYTTIIEQNAQAIRKVFVSQLNEDVLNEMILESHSNVLPNEE 363 Query: 383 FQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIR-G 441 ++ ++ + + I T Q L + V R R Sbjct: 364 NRN----------------------NRVLAENWDAPIIFTTNVQFLEAFYGVGTRNARKL 401 Query: 442 LGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQ-ADVGGSVILLSATLPMKQKQKLLDTYGL 500 + S++I DE L + + IL +AT P+ + Sbjct: 402 HNLANSIIIFDEAQTLPVRCLHLFCHAVNFLVEHCNCTAILCTATQPLLHEI-------- 453 Query: 501 HTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERM 560 P E+ + + N++ + R D + R ++ E L + +++ Sbjct: 454 ---PAEHGALWLSKNFQILPDKFRKDSADSLK----RVTVIDECKPQGWRL--EEVADKV 504 Query: 561 IAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNF 620 G +I N + Y L++ + ++ R + + V + Sbjct: 505 SCIHKQGNSCIIILNTKADTRELYTILRKRHGEELT-YHLSTAMCAAHRMDILSEVKTLL 563 Query: 621 GKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEI 680 + N I V+TQ++E +D+DFD I D + Q GR++R+ +K + Sbjct: 564 ----RNNQPVICVSTQLIEAGIDIDFDTGIRALAGIDSIAQAAGRINRNGKKPADSA--- 616 Query: 681 PVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELN---GASLFFPDAYRQWL------ 731 I GE + I + + +E G SL +++ Sbjct: 617 --LYIQNISGENLKNLQDIAVAQVEAQKVLREFKENPNEFGNSLLSEAVMKRYFKFYIFN 674 Query: 732 ---DSIYDDAEMDEPEWVGNGMDKFESAECEKR------FKARKVLQWAEEYSLQDNDET 782 + Y + + + ++ + + + A E+ + ++D Sbjct: 675 RKDEMTYKIKSDNLVNLLSSNVNAVGEYKRTHKNQPYPNILRQSFATAAREFKVINSDTQ 734 Query: 783 ILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFS 842 + +PY + G + L VNV + + Sbjct: 735 GI-----------FVPYNDEARGLLNQLRNTKSSEFQRYLFRRLQRYTVNVYPYMLKKLT 783 Query: 843 EV 844 ++ Sbjct: 784 KI 785 >UniRef50_B1I5P0 Metal dependent phosphohydrolase n=2 Tax=Clostridia RepID=B1I5P0_DESAP Length = 729 Score = 311 bits (797), Expect = 6e-83, Method: Composition-based stats. Identities = 187/831 (22%), Positives = 296/831 (35%), Gaps = 165/831 (19%) Query: 26 LLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQY 85 L+ H +V R+ L ++ L A HD+GK FQ Sbjct: 13 PLLAHLKEVTEQGKIL-----------ARHLGLPP-ALEKRALLACAFHDVGKATRSFQD 60 Query: 86 KSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHP 145 + + + H A L + L + Sbjct: 61 YMRG-----------------KRGKGYPHALASLPFALAAEL----------------YT 87 Query: 146 YESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTP 205 ++ AV HH + P Y A D + + LE + Sbjct: 88 LQASPLAAAAVLSHHSPL------------GPEVYRGYRAPDYVDEKNLAAFLEDVVAFL 135 Query: 206 AGLSINDIPPDCSSLLAGFCSLAD----------WLGSWTTTNTFLFNEDAPSDINALRT 255 GL P LL S G + LF E P D ++ Sbjct: 136 QGLGWEGNLPAVEKLLKLATSDGTPATLLDNSRFRFGEELISLRGLFKELPPIDFADIKA 195 Query: 256 YFQDRQQDASRVLELSG-LVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEA 314 Q AS +G L ++ + ++ + Q R Q + + A Sbjct: 196 VLQLADWVASSGKAQAGDLFLHQGRKLVLTSIKEKSIQLRPFQKKAGEMKRERLW--LRA 253 Query: 315 PTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAH 374 PTG+GKTE L +A + +++ LPTQATANAM R++ ++ N+ LAH Sbjct: 254 PTGTGKTEALLLWA------GDTERLLYLLPTQATANAMWKRLKK----IYGEENVGLAH 303 Query: 375 GNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPV 434 G + + I + EE + W S + + V T+DQ L++ L Sbjct: 304 GRAGY-----------ILRKELEEDPLDVRLWASVFARP-----VVVGTLDQYLMAHLQG 347 Query: 435 KHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKL 494 +H IR R+ +++DE+H+YD Y GLL+ L + + L SATLP + L Sbjct: 348 RHWEIRRSLARRATVVLDEIHSYDPYTLGLLQEAL--AQEPPARLALASATLPEFLPELL 405 Query: 495 LDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDL 554 L + PL +R +L E + Sbjct: 406 GQGPLLEAEE-------PLWQ------RKRHELRLFVEPV-------------------A 433 Query: 555 TMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKEN 614 + LE ++ G V +I N V AQ YQ L+E + + L H+RF DR +KE Sbjct: 434 SALEEALSFVRQGKTVLVIANTVKQAQEIYQALQE--DGDYQVHLLHSRFAFRDRWKKEE 491 Query: 615 RVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYR 674 ++ GK G ILVATQ+VE SLD+ +D L T+ P D L QRLGR++R Sbjct: 492 QL-------GKTIPGTILVATQIVEVSLDISYDVLFTEVAPIDALVQRLGRVNRRGITPE 544 Query: 675 PAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSI 734 A I L E E IY ++ ++ + ++ + Q + + Sbjct: 545 GTTAPPAPAFIFL---EWDKGSEKIYG-QEILTWSRDILNDMPQHP--TDGEWVQATNRL 598 Query: 735 YDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILA--VTRDGEM 792 Y+ ++ E + R+V + + Y++ +DE + TR G++ Sbjct: 599 YEVQASSPS---------YQEDLREGQQTLREVQRISGCYTIDLSDEEMQKKFTTRKGQL 649 Query: 793 SLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSE 843 S+ +LP L + + L V VP W +FS Sbjct: 650 SVEVLPQALKDEAFALRERGEHWRLVELL---------VPVPVYWLPAFSH 691 >UniRef50_C0GMN4 CRISPR-associated helicase Cas3 n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GMN4_9DELT Length = 721 Score = 311 bits (796), Expect = 7e-83, Method: Composition-based stats. Identities = 120/789 (15%), Positives = 213/789 (26%), Gaps = 143/789 (18%) Query: 9 HYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLL 68 Y+ + ++ + LL H VA + R S W Sbjct: 2 QYYAHTLEN-KPQREWQLLEVHLRQVAEMT-----------AKHARVFSASD-----WGY 44 Query: 69 FFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLS 128 LHDIGK+ FQ K Q R+ +H G + Sbjct: 45 ILGRLHDIGKYRQEFQDKLE-----------------KQSSRRVDHKGVGARLAWEYLGQ 87 Query: 129 EQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHS-QDQDKSRWEMPASLASYAAQD 187 L + GHHG + + Q + + L Sbjct: 88 PGKL-------------------VSYCIAGHHGGLPNYGHSQTDTSTSLMDLLQQAGVLP 128 Query: 188 KQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAP 247 A + + +L P + +L AD+L + + Sbjct: 129 DHAPDPVSDI--SLPSLPFQPRSAFQLAFFTRMLFSALVDADFLDTERFMEPEKY----- 181 Query: 248 SDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAP 307 ++ L N + + N + L+ + + P Sbjct: 182 ------------AARNPGPALADLLQPLNAKLAGFSNEGRINLLRREILERCRENASLEP 229 Query: 308 GLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSS 367 GL + PTG GKT ++A+A + + +I+ +P + +F Sbjct: 230 GLFTLTVPTGGGKTLASMAFALEHSQKYGHRRIIYVIPYTSIIEQN----AQVFREIFPP 285 Query: 368 PNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQV 427 ++I H N EEA + + + + V T Q Sbjct: 286 DSIIEHHSNF-------------DERSLPEEADQFGPGLRHRLACENWGAPVVVTTNVQF 332 Query: 428 LISVLPVKHRFIR-GLGIGRSVLIVDEVHAYDTYMN-GLLEAVLKAQADVGGSVILLSAT 485 S+ K R + SV+I+DE L A+ + + S++L +AT Sbjct: 333 FESLYASKPSRCRKLHNLAGSVIILDEAQMLPVKYLNPCLRALEELAENYQASIVLCTAT 392 Query: 486 LPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPI 545 P +K+ + PE + Sbjct: 393 QPALRKRDDFKHGLDGVREIA------------------------PEPKRMHREFLRTRL 428 Query: 546 CLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFT 605 A L LE + QV + N A + ++ + A Sbjct: 429 KDAGRLD----LEEVANLIRDKEQVLCVVNTRARAGNLFDLVQNEPGAR----HLSALMC 480 Query: 606 LNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGR 665 R + ++ +V+TQ+VE +DV F +I + D + Q GR Sbjct: 481 PAHRSLELKKIREVLM----DGAPCRVVSTQLVEAGVDVSFPEVIREMAGLDSMAQAAGR 536 Query: 666 LHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPD 725 +R ++ T+ P + R G F PD Sbjct: 537 CNREGELD-----DLGKVTVFTPSEGLAPAFSQAAGSAHSTLR-------HYGHDPFAPD 584 Query: 726 AYRQWLDSIY--DDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQD-NDET 782 A + Y +DE + + K +++ + N+E Sbjct: 585 AVEYFFSETYWLQAQRLDEKQILDEFRAPAPKWAFRDVAKRFNLIENFMSPVIISFNEEA 644 Query: 783 ILAVTRDGE 791 + R Sbjct: 645 ENLIERLRF 653 >UniRef50_A1HND8 CRISPR-associated helicase Cas3 n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HND8_9FIRM Length = 791 Score = 311 bits (795), Expect = 1e-82, Method: Composition-based stats. Identities = 156/810 (19%), Positives = 265/810 (32%), Gaps = 91/810 (11%) Query: 5 KYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVK 64 + + W KS L+ H AV D + + + + + Sbjct: 8 QSLGDIWAKS--PPGPDETAASLVDHIF---AVLAQMGDYIRLYEEELRSVKHID---LP 59 Query: 65 AWLLFFIALHDIGKFDIRFQYKSAE-SWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFN 123 LL+ LHD GK RFQ + L SL F G Sbjct: 60 RVLLYAALLHDFGKIHPRFQQQLRGYCRFGLRHEVLSLAFLQYLDIPPFERGYLAAAIVL 119 Query: 124 QDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASY 183 + + + Y + + V+A+ L D S+ ++ L Sbjct: 120 HHKGWRT-----LTVGEGSTVAYYNRYVPVDAIA-----PLAELTADLSQDKIGG-LKRL 168 Query: 184 AAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFN 243 A + + + +I+ S + + Sbjct: 169 LADSANIIKNVTGLTIKPYDYKPTSAIDLRTAIYQSFQDAETIVLQLKKQNRGHRHAAID 228 Query: 244 EDAPSDINALRTYF--QDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVD 301 LR D A++V +G + + ++ LDN ++ ++L Sbjct: 229 WPKAYIGFLLRGLMIAADHLASAAKVDLQTGFSNVEEVLTALNIKLDNLWEHQRL----- 283 Query: 302 ALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQI-ADSVIFALPTQATANAMLTRMEAS 360 L G ++ APTG+GKTE+AL +A D+ V F LP +A+ AM R+ Sbjct: 284 -LAKTEGNAILIAPTGTGKTESALLWAALQRDKNKTCGRVFFLLPYRASMQAMAARL--- 339 Query: 361 ASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIG 420 +F + + HG S + + A ++ ++ + + Sbjct: 340 -GMVFGKDAVAIIHGKSLIYLYEKLLDQEYSP------ANALVTAKQQEALNRLNVAFLR 392 Query: 421 VCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQ-ADVGGSV 479 VC+ Q++ S K + L+ DE+HAYD + +L + V Sbjct: 393 VCSPYQLIKSFFAQKGYETIICSALSAQLVFDEIHAYDPKITAMLLVAAQFLCERFNARV 452 Query: 480 ILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFS 539 + +SATLP Q + + PV+ P ++W R L P Sbjct: 453 LFMSATLPSHLLQSIQKMFPSIRAPVK-----PAVDWLKQVKRHRISRLPFASLSPETV- 506 Query: 540 IQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDL 599 + I AA V + N VD A L++ D+ L Sbjct: 507 -------------------QHIKAAAKNKSVLAVVNRVDRAIRLANMLRKEI---SDVVL 544 Query: 600 FHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLL 659 H+RF DR KE ++ G +LVATQVVE SLD+D+D + P + L Sbjct: 545 LHSRFNARDRSRKEKQL--------APKPGHVLVATQVVEVSLDIDYDIGFFEPAPLEAL 596 Query: 660 FQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGA 719 QR+GR++RH ++ PA I P + + + Q I + G+ Sbjct: 597 LQRMGRVNRHGKQVHPAD-----VYIFSPPEGNVTDDWAKPYDAEHLSQVLQVINDFLGS 651 Query: 720 S---LFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSL 776 S ++ + LDS Y PE + + + ++ Sbjct: 652 SHCRIWDESMTQSLLDSSY-------PETLKRKLADELDRAVYEFDQSFAQQLLPYGLQS 704 Query: 777 QDNDETILAVTRDGEMSLPLLPYVQTSSGK 806 D + + A + +LP S Sbjct: 705 ADTLKELQAQWDRLFNGVEVLPESLVSEAY 734 >UniRef50_A8TD04 CRISPR-associated helicase Cas3 n=1 Tax=Methanococcus voltae A3 RepID=A8TD04_METVO Length = 881 Score = 309 bits (792), Expect = 2e-82, Method: Composition-based stats. Identities = 117/886 (13%), Positives = 282/886 (31%), Gaps = 113/886 (12%) Query: 26 LLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQ--RVKAWLLFFIALHDIGKFDIRF 83 LL H V + D + + + +++ +K HD GK F Sbjct: 26 LLKDHLEGVLQICDFFTNNYYGV------YFQNNEEYSILKKITYIIALCHDFGKITPYF 79 Query: 84 QYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAP 143 Q + + + NH Y+ + + L + Sbjct: 80 QEYIQNIID---------EKSTLKNSKYKNHSLISAYFTY--YVVSKYLKSINKLDEVDN 128 Query: 144 HPYESWFPWVE-AVTGHHGFILHSQ------DQDKSRWEMPASLASYAAQDKQAREEWIS 196 +++ + V HHG I +++ D D + + + ++ + Sbjct: 129 ENFKNLPYFSYLIVKRHHGNIKNAKEERVLVDDDLINLQKDSIVNGKKEYVEEINLIYNE 188 Query: 197 VLEALFLTPAGLSINDIP----------------PDCSSLLAGFCSLADWLGSWTTTN-T 239 + + + + I + + D+ S Sbjct: 189 LFKKYGIFEDEIDILEFFGNLMVPGTKSINYIVKKSYKTCKKSIDKNTDFANSEDIEQLQ 248 Query: 240 FLFNEDAPSDINALRT---------YFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNG 290 ++++ +D Y ++ + + L + N Sbjct: 249 YMYSILLTADKMDAGNINLQKNSPMYSKELIEPYIQSLNQKNTIEPNVKNIKNINKNIND 308 Query: 291 YQP---RQLQVLVDALPVAPGLTV-IEAPTGSGKTE----TALAYAWKLIDQQIADSVIF 342 + L+ ++ + + + + PTG+GKT TA A +L + I +I+ Sbjct: 309 IRNDIFNDLKNRLNNINLKENHVLSLNLPTGTGKTLLSYYTAFHIANELNKKNIFPKIIY 368 Query: 343 ALPTQATANAMLTRMEASASHLFSSPNL-----ILAHGNSRFNHLFQSIKSRAITEQGQE 397 +LP + +E + ++ I H + ++ Sbjct: 369 SLPFTTVIDQNYEVLEKLLHMNNENTSIHNNGLIKYHSLAEIPDNLENEAEEEFYNNSNI 428 Query: 398 -EAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHR--FIRGLGIGRSVLIVDEV 454 + + + + + + G++ V T Q+ + + R + S++I+DE+ Sbjct: 429 CDKNSKYLDYNIKFSYDNWQGKVIVTTFVQLFNTFFKLGLNKINHRYYNLRNSIIILDEI 488 Query: 455 HAYDTYMNGLLEAVLKAQ-ADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPL 513 A + ++ L G +IL +AT+ + + V + + Sbjct: 489 QAINPSYYKIINKYLNMLCEKYGIYIILATATMTPLFDDSM--------ELVSSKKYFEK 540 Query: 514 INWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLI 573 +N + + ++ + + L D+L + + + ++ Sbjct: 541 LNRITLYNKSKEEINIE----------DFKELVLNDILDNENNNTNNTNKSKD--KFLIV 588 Query: 574 CNLVDVAQVCYQR-----LKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNV 628 N V+ A+ Y+ L + NN ++ R E +++ +N +N Sbjct: 589 MNTVNSARQVYEFMSNKLLDKNNNYDGEVIYLSTEVAPKKRMEIIDKIKD--KENRNKNR 646 Query: 629 GRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLP 688 ++V+TQ+VE +D+D D + P D + Q GR +R+ I T Sbjct: 647 KYVVVSTQLVEAGVDIDMDVIYRDFAPIDSITQTSGRANRNGANDEKGIIYIYKVT---- 702 Query: 689 DGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGN 748 + + + IY + T+ + + + + Q ++ Y E GN Sbjct: 703 NEKDKCYSKFIY-PAWCIQLTKDILNKQKNREIS--ENEFQVINETYQH------ELHGN 753 Query: 749 GMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQL 808 + +S + E+ K + + + ++L DN+ I D ++ ++ Sbjct: 754 RISYIDSNKMEENLKELNIKSFRDSFNLIDNNYRIY----DIYLNYDNEFNEIIGEIEKE 809 Query: 809 LDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWLE 854 L ++ + ++ L ++++ + + + E L +E Sbjct: 810 LLKSKKNNIKIKNLFKKLNKYKISISKDKYYNIKDNLKELSNLEIE 855 >UniRef50_A5D0R9 Predicted helicases n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D0R9_PELTS Length = 738 Score = 309 bits (790), Expect = 4e-82, Method: Composition-based stats. Identities = 144/802 (17%), Positives = 237/802 (29%), Gaps = 133/802 (16%) Query: 15 SKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIAL- 73 S S + HLL H + A +A + F +L + L Sbjct: 8 SHSKNGLGNRHLLDEHLISAAEMA-----------SRFTAPFYRGS---FTFLGWMAGLL 53 Query: 74 HDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLG 133 HD+GK FQ K H G L +Q Sbjct: 54 HDLGKCHPGFQEYLKVV-------------DQGGRGEKVPHSPWGAALAGCLQLPQQLRC 100 Query: 134 DFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQD-KSRWEMPASLASYAAQDKQARE 192 + GHH + D K + + Q+ Sbjct: 101 -----------------LLGLIIYGHHSGLTEPGDYSSKISTYTSKEMLTRMHLFLQSLY 143 Query: 193 EWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINA 252 + + L + + + AD L T + + + Sbjct: 144 NECLLQVPRAASWPDLDAIQLEMLGRMVFSALL-DADRL--DTEAHFYPEKRRLREKHPS 200 Query: 253 LRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVI 312 L + +QD +LE + + + N + + + A PG + Sbjct: 201 LEELAERLKQDQKLLLEKA----------ARNPTVVNRVRKEVYEACLAAASKKPGFYRL 250 Query: 313 EAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLIL 372 PTG GKT ++LAYA +IF LP + + + S ++ Sbjct: 251 TVPTGGGKTRSSLAYALGHAIFHKKRRIIFVLPYTSIIDQNAR----VYREILGSEAVLE 306 Query: 373 AHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVL 432 H A+ G EEA L ++ + + V T Q+L S+ Sbjct: 307 YHS------------QTAVPAVGDEEADDPQLLRLQL-AEENWDLPVIVTTTVQLLESLF 353 Query: 433 PVKHRFIRG-LGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQ-ADVGGSVILLSATLPMKQ 490 K R I SVLI DE + VLK + G +V+L +AT P Sbjct: 354 SNKPSRCRKIHRIADSVLIFDEAQTLPPLLLKPTLDVLKDLVENYGTTVVLSTATQPAFN 413 Query: 491 KQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADM 550 + L D G+ + + F+LL E + Sbjct: 414 SEFLPDVQGMEF------------TEIVPDYQKHFELLKRVEYCLLPGQVS--------- 452 Query: 551 LPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRR 610 LE + QV +I N A L + RR Sbjct: 453 ------LEYLAEELAGHEQVLVIMNTRKEAIRLVDELVRRGR---ECFHLSTLLCGAHRR 503 Query: 611 EKENRVISNF--GKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHR 668 + V K +LV+TQVVE +D+DF + P D + Q GR +R Sbjct: 504 VILDEVRRRLDLNKRPGPKSPLLLVSTQVVEAGVDLDFPLVYRAVGPLDRIVQAAGRCNR 563 Query: 669 HHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNG-ASLFFPDAY 727 R + + + +GE + + + E G +L +PD + Sbjct: 564 EGRAKSG------LVKLFILEGEKAPSGPY----KAWFELARVILSERGGAGALNYPDIF 613 Query: 728 RQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVT 787 +++ ++ +G +DK E V AE Y L ++D T+ + Sbjct: 614 KEYFSRLF--------NLLGGNLDKHGVQELRAELNYPAV---AEHYRLIESD-TVPVLV 661 Query: 788 RDGEMSLPLLPYVQTSSGKQLL 809 + GE + S ++ Sbjct: 662 KYGEWDKAFRRFELRPSREEWR 683 >UniRef50_A1TU75 Metal dependent phosphohydrolase n=25 Tax=Proteobacteria RepID=A1TU75_ACIAC Length = 792 Score = 308 bits (789), Expect = 6e-82, Method: Composition-based stats. Identities = 125/800 (15%), Positives = 225/800 (28%), Gaps = 139/800 (17%) Query: 17 SLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDI 76 + L H V +A F + LHD+ Sbjct: 45 EGQPESRWQTLPEHLHAVGRMAGE-----------FAAVFN-----AQELAQVMGWLHDL 88 Query: 77 GKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFF 136 GK+ + FQ + S L+ +H G Q L Sbjct: 89 GKYTLPFQARLRGSPLR------------------VDHSTWGARIAQQRLGVMGQL---- 126 Query: 137 SFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWIS 196 + GHH + + Q + + A+ A E+ I Sbjct: 127 ---------------MAYGIAGHHAGLANGQGEGERTALADRLTAADLPALHPAWEKDIP 171 Query: 197 VLEALFLTP-----------AGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNED 245 + L L A + +L AD++ + +L Sbjct: 172 LPARLALPAGLKLYGQDRQQALARQPFQMAFLARMLFSCLVDADFIDTER---FYLQARG 228 Query: 246 APSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPV 305 P +A + A L L + V N + L+ + + Sbjct: 229 GPDHRSAGPAWPALPALRAQLDTHLRTLTAQCDPAREV-----NRLRADILRQVRERAEC 283 Query: 306 APGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLF 365 PGL + PTG GKT +LA+A + VIF +P + + L Sbjct: 284 TPGLFSLTVPTGGGKTLASLAFALDHAVRHGLRRVIFVIPFTSIVEQNAAVFRKALGPL- 342 Query: 366 SSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTID 425 ++ H + R E+ L+ + + I V T Sbjct: 343 GDTAVLEHHS---------AFTERQPPHDDPEKYQSAEKLRLA---MENWDAPIVVTTAV 390 Query: 426 QVLISVLPVKHRFIR-GLGIGRSVLIVDEVHAYDTYMN-GLLEAVLKAQADVGGSVILLS 483 Q S+ + R I SV+++DE + + A+ + + S++L + Sbjct: 391 QFFESLFAARPSQCRKLHHIAGSVVVLDEAQTMPLKLLKPCVAAIDELARNYRTSIVLCT 450 Query: 484 ATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPE 543 AT P+ + + PE ++ Sbjct: 451 ATQPVLEAPAFDGGLTGVRELA-------------------------PEPTRLFQQLERV 485 Query: 544 PICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHAR 603 + L D + + A QV I N A+ Y+ + +L + Sbjct: 486 RVRHVGTLDDAALAGHLRAR----EQVLCIVNNRRHARAVYEAMADLPGAR----HLTTL 537 Query: 604 FTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRL 663 R E + V + +V+T ++E +DVDF ++ D + Q Sbjct: 538 MCARHRSEVLDEVRQML----EAGEPCRVVSTSLIEADVDVDFPTVLRAEAGLDSIAQAA 593 Query: 664 GRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFF 723 GR +R + + P E + + + ++ + + L Sbjct: 594 GRCNREG----GRPIDASEVLVFSPANEDWAPPPEL---KQYAQAAREVLRQCADDPL-S 645 Query: 724 PDAYRQWLDSIY---DDAEMDEPEWVGNGM----DKFESAECEKRFKARKVLQWAEEYSL 776 P A ++ +Y ++D P+ +G D RF+ +Q Sbjct: 646 PGAIARYFALLYWQKGGDQLDVPDLMGLLKTRRPDSLPMETLATRFRMIDSVQMPVIVPY 705 Query: 777 QDNDETILAVTRDGEMSLPL 796 D L R E S+ L Sbjct: 706 DDTARETLEQLRFAEGSVGL 725 >UniRef50_UPI0001BC52A9 metal dependent phosphohydrolase n=1 Tax=Fusobacterium sp. 3_1_5R RepID=UPI0001BC52A9 Length = 801 Score = 307 bits (787), Expect = 9e-82, Method: Composition-based stats. Identities = 149/902 (16%), Positives = 274/902 (30%), Gaps = 181/902 (20%) Query: 39 DCWWDQSVVLQNTFCRNEMLSKQRV------KAWLLFFIALHDIGKFDIRFQYKSAESWL 92 + + + +L + R + + L HD GK + FQ + Sbjct: 19 ETIMEHTEILLQEYDRISTIYPNFIEKIPKVWKVLYLVCVYHDWGKINFPFQNRILTGK- 77 Query: 93 KLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPW 152 + + H + N + LS++ P E Sbjct: 78 --------------KQWNELPHAILSIACLNAEELSKEF-------------PREEIQLL 110 Query: 153 VEAVTGHHGF---ILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLE------ALFL 203 A+ HH + + DQ +S+ + + + + +L L Sbjct: 111 YSAILFHHNREDLLSYEIDQIRSQLQEMSEDVKQMWEIICMNPQQYPLLNQKKIYFDSNL 170 Query: 204 TPAGLSINDIPPD-----------CSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINA 252 + P D LL G + D+ S + Sbjct: 171 YFEDSFYQEFPVDILNPKECEKAVFYILLKGLLNRIDYAASAHIPVEHKNDFLEKG---- 226 Query: 253 LRTYFQDR-QQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTV 311 L T+ QD + SR +E S LQ + + + Sbjct: 227 LETFMQDLNVERTSRGMEKSDW--------------------NNLQEYMKSHQEDN--VI 264 Query: 312 IEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRME-ASASHLFSSPNL 370 + A TG GKTE L + F LP + +A+ R++ + L Sbjct: 265 VVAQTGLGKTEAGLWWI-------GDHKGFFILPLRTAIDAIYDRIKNKIIKNDRVEERL 317 Query: 371 ILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNK-KVFLGQIGVCTIDQVLI 429 L HG S ++L + E+ +E +W + K + + +CT+DQ+ Sbjct: 318 ALLHGESLESYL-------QLWEKEKELQEGSGFEWENYYIKTRQLSLPLTICTLDQLFP 370 Query: 430 SVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMK 489 V + + + S +++DEV Y + G L L +GG +L+AT P Sbjct: 371 FVFRYRGYEAKLATMAYSKVVIDEVQMYGPDLVGFLIVGLTMIQKMGGKFAILTATFPGF 430 Query: 490 QKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLAD 549 K + + + ++ Y ++ E Sbjct: 431 IKDLMREQGL----EFKMSTPY----------------------------VKEESRHSVQ 458 Query: 550 MLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNT-----------QVDID 598 + + ++ +V +ICN V Q Y L E +++ Sbjct: 459 WIQKEINADFILEK-YKNNRVLVICNTVKRCQEIYHDLYEKMEISQEKLLSHDIMDRELN 517 Query: 599 LFHARFTLNDRREKENRVIS----NFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHC 654 LFHA+F DR +E ++ N + I +++ VE SLD+DFD LIT+ Sbjct: 518 LFHAKFIKKDRAIREKAILEFGSLLKQDNTPNDRQGIWISSSAVEASLDIDFDILITELS 577 Query: 655 PADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIE 714 + LFQR+GR R R F V G G + ++ + Sbjct: 578 DMNSLFQRMGRCFR-GRILETGDFNCYVFDGGDKKCSGIGYS----IQEEIYEISKNDLR 632 Query: 715 EL--NGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMD-----------KFESAECEKR 761 + ++ ++ Y +++ ++ D + + E + R Sbjct: 633 QHFSTNGNILTEKEKMDLVEQTYSKEKLEPTKYYKEVKDFIKNPSLYLPNEMSAKEGQFR 692 Query: 762 FKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQ 821 F+ + Q N E I R E L L Q S ++ + Sbjct: 693 FRNILSERIIPLPVYQQNIEEI----RKIEEKLKLPLNSQMSEN---MEEKSISKEERIL 745 Query: 822 QYEALALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMTR 881 E L ++V + + K+ + + Y G+ + Sbjct: 746 CREKLMQYTLSVESYLLKGAN-----------IEKKITINSYQEIKVVSCEYDSLIGLGK 794 Query: 882 VI 883 +I Sbjct: 795 II 796 >UniRef50_Q5JGA4 DEAD/DEAH box helicase, fused to N-terminal HD domain n=1 Tax=Thermococcus kodakarensis RepID=Q5JGA4_PYRKO Length = 740 Score = 307 bits (787), Expect = 9e-82, Method: Composition-based stats. Identities = 163/862 (18%), Positives = 301/862 (34%), Gaps = 149/862 (17%) Query: 27 LIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYK 86 L H LD V ++N+F E LS + + + LHDIGK FQ K Sbjct: 14 LECHTLDAINV-------LKSIKNSFPWLEELSPGIFERSF-YAVLLHDIGKCASGFQKK 65 Query: 87 SAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPY 146 + + H + + SE Sbjct: 66 --------------------KNKWGYRHEILSVPFVQFLDFSE----------------- 88 Query: 147 ESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPA 206 A+ HH + ++ R + L D+ E +E F++ Sbjct: 89 RERNLIALAILTHHKTLDELEEILPVRIDNIGPLEFDEKLDE--LLERAEYIEKTFIS-R 145 Query: 207 GLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQ--DRQQDA 264 +I + L F DW + E +++ A R +A Sbjct: 146 IPNIEAYYFGTTKLPKRFNLPPDWKERLRDFDFQKLTEWYENNLEAERGTLTFMRGLLNA 205 Query: 265 SRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETA 324 S L +G + L+ R+L+ L A + G ++ APTG GKTE A Sbjct: 206 SDHLASAGETEI-LLLPDIVERLELKIPMRKLRPLQVAASNSEGNLLLRAPTGYGKTEAA 264 Query: 325 LAYAWKLI---DQQIADSVIFALPTQATANAMLTRMEASASHLFSSPN-LILAHGNSRFN 380 L +A + + I + + LP +A+ NAM R +FS P+ + + H ++ F Sbjct: 265 LLWANRNAFRNKEGITSRIFYVLPYKASINAMHQR----MMDIFSDPSLVGVLHSSASFY 320 Query: 381 HLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIR 440 +++ + ++ S + V T Q++ + V + Sbjct: 321 LYTSALEYKRLS-----------------SLYHKIYTPLKVTTPFQLMKAFFGVGFHEML 363 Query: 441 GLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGL 500 + S++I DE+HAY+ + G++ A+LK + ++++ATLP ++ + DT Sbjct: 364 KTELSGSLIIFDEIHAYEPNVLGIILAMLKELEGLKAKTMVMTATLPDFLEELITDTADF 423 Query: 501 HTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERM 560 A R I + +++ DL + +++ Sbjct: 424 RELKTSAEEADKFTRHRV-------------------HVIDGGMESVGELIADLGIHKKV 464 Query: 561 IAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNF 620 + G + CN VD A Y+ L E + L H+RFT DR KE ++ Sbjct: 465 EETSRPG---LVACNSVDQAVRVYKELSE----DYRVLLLHSRFTYGDRETKEKLLLEKM 517 Query: 621 GKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEI 680 + +VATQVVE SLD+ F ++T+ P D L QR GR++R G++ Sbjct: 518 SEYD------FVVATQVVEVSLDLSFSTILTEPAPLDALIQRFGRVNR-------QGWKE 564 Query: 681 PVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEM 740 + +G IY+ V+ + + +++ +G L + + Y Sbjct: 565 GRIEDVYVLTKGADADRKIYNPYDVVEESLKILQDFDGKELR-ESLIPELVSEAYAPVSD 623 Query: 741 DEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYV 800 + E V + + A+ V + ++++ + L +P V Sbjct: 624 ELVEKVRDYQN-----------TAQDVFNNVKPMRTGEDEQKFYQMF----NGLEAVPGV 668 Query: 801 QTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLD 860 +LLD ++ L + +P + + + + + Sbjct: 669 YQGRVSELLDKKMG---------MELYRYLIPIPMWFYHAERK---------NFHRLSDK 710 Query: 861 GWVWQGNSIVITYTGDEGMTRV 882 G+ + Y ++G+ RV Sbjct: 711 GYGKYILVAELEYDPNKGLQRV 732 >UniRef50_Q746C3 Hypothetical conserved protein n=2 Tax=Bacteria RepID=Q746C3_THET2 Length = 786 Score = 307 bits (787), Expect = 9e-82, Method: Composition-based stats. Identities = 121/785 (15%), Positives = 224/785 (28%), Gaps = 140/785 (17%) Query: 15 SKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALH 74 + + H L H V L F ++ + LH Sbjct: 64 AHTPNPQGAWHALKDHLEAV-----------SRLAGGFAQHFGTP-----SLGQALALLH 107 Query: 75 DIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGD 134 D+GK FQ + + H G S Q G Sbjct: 108 DLGKATRDFQAYLKVAAE-------------GKRTNSVPHAVWGAALAYVALGSGQHEG- 153 Query: 135 FFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEW 194 W + V GHH + + + E Sbjct: 154 --------------WEAFGLPVMGHHAGLPKRGEAASKLAQALKEEPFKEVAAFLRSSEL 199 Query: 195 ISVLEALFLTP-----AGLSINDIPPDCSSLLA-GFCSLADWLGSWTTTNTFLFNEDAPS 248 + LE L + + + + D +A AD+L T + Sbjct: 200 RTRLEGLLNEALKEVRSKTAGDPLRLDFLVRMAFSALVDADYL--DTEAHFDPSVARLRQ 257 Query: 249 DINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPG 308 + +L + +D +L+ V L N + + + A ++PG Sbjct: 258 EGYSLEKLWARFHRDQEALLQ------------RVRPSLVNSVRREVYEACLQAAELSPG 305 Query: 309 LTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSP 368 L + PTG GKT + LA+A + + V+ A+P + + + Sbjct: 306 LFRLTVPTGGGKTRSGLAFALRHALKHGLRRVVVAIPYTSIIDQT----AQVYREILGEE 361 Query: 369 NLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVL 428 ++ H G+E+ Q L+ + + + V T Q+ Sbjct: 362 AVLEHHSA-------------YEPPLGEEQEENVLRQRLA---TENWDAPLVVTTTVQLF 405 Query: 429 ISVLPVKHRFIRG-LGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQA------DVGGSVIL 481 S+ + +R + RSV+++DEV + L+ A G +V+L Sbjct: 406 ESLFSNRPSKMRKVHRLARSVILLDEVQTLPPELLKPTLEALRLLATPVEEGGYGATVVL 465 Query: 482 LSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQ 541 +AT P + V P+ L + + Sbjct: 466 STATQPTF-------------EVVPTFQGLPVREIVPDYPRHFARL------QRVVYERR 506 Query: 542 PEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFH 601 P+P+ E + A QV ++ N A + L Sbjct: 507 PKPLS----------WEELARELQARPQVMVVLNTRKDALALLEAL----GEDPHAYHLS 552 Query: 602 ARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQ 661 RRE V + L++TQVVE +D+DF + P D + Q Sbjct: 553 TLLCPAHRREVLEEVRRRL----REGAPVRLISTQVVEAGVDLDFPEVWRAIGPLDRVVQ 608 Query: 662 RLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASL 721 GR +R R + + P+ R + + + + +EE L Sbjct: 609 AAGRCNREGRLDKGK------VVLFWPEEGTTPRGPYRVG----VEKARLLLEEHPPERL 658 Query: 722 FFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDE 781 P Y+ + ++ + + + + E +R++ + + + Sbjct: 659 HDPGLYQAYFKELFT--TVKTDKGIQEHRKDLDYPEVARRYRLIQEDTVSVVVPYGEGLA 716 Query: 782 TILAV 786 + A Sbjct: 717 RLEAF 721 >UniRef50_B1YHA2 Metal dependent phosphohydrolase n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YHA2_EXIS2 Length = 773 Score = 307 bits (787), Expect = 9e-82, Method: Composition-based stats. Identities = 121/841 (14%), Positives = 238/841 (28%), Gaps = 129/841 (15%) Query: 48 LQNTFCRNEMLSKQRVKAWLLFFIAL-HDIGKFDIRFQYKSAESWLKLNPATPSLNGPST 106 L E K + L HDIGK FQ ++ + Sbjct: 21 LLEARGLAENWGKDIGLMHVCGVAGLLHDIGKLSDEFQTYIRKATSGEHV---------- 70 Query: 107 QMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHS 166 + +H AG + A+ HHG + Sbjct: 71 -RRGEVDHATAGGRLLFEQLKGN--------------RGQLLAEMVANAILSHHGNLQDY 115 Query: 167 QDQDKSRWEMPASLASYAAQDKQAREEWISVL--EALFLTPAGLSINDIPPD-------- 216 ++ + K RE + V+ E F +++++ Sbjct: 116 -YLEEESPFLQRVERKELPSYKMCRERFFQVVIDEQEFNRYVERAVDELYSWILRDGGST 174 Query: 217 -----CSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELS 271 + + AD + + D L+ + S+ E++ Sbjct: 175 ARVSLATKYIFSILLDADRTNTRE-FEQGITTMTTQVDFEELKRRLETHLSTFSQQTEIT 233 Query: 272 GLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKL 331 + N + G+ + PTG GKT +L YA Sbjct: 234 PI---------------NRLRQEMSDACRVFANQPSGVYTLSIPTGGGKTLASLRYALHH 278 Query: 332 IDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAI 391 +I+ +P + ++ H N + Sbjct: 279 ATTYQKKRIIYVVPFTTIIEQNARVARDVL----GTDMILEHHSN--------------V 320 Query: 392 TEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIR-GLGIGRSVLI 450 E V Q K + I T+ Q L + +R R + +++I Sbjct: 321 VEIEDASDDVMDIQAKLHLAKDNWDAPIIFTTMVQYLNTFYAKGNRNTRRLHHLSEAIII 380 Query: 451 VDEVHAYDTYMNGLLEAVLKAQAD-VGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNS 509 DEV L +K D + SV+L +AT P Sbjct: 381 FDEVQKVPLKCISLFNESVKFLKDSLESSVVLCTATQPAL-------------------- 420 Query: 510 AYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQ 569 + ++ + D L + R ++ + + + E + Sbjct: 421 --EFVKYQLHQDGEMIDALPQVMEAFRRTDLEV----VEGEMDTARLAEVVTRQVEEKNS 474 Query: 570 VCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVG 629 V +I N V + Y+ L++ + + ++ R + + ++ Sbjct: 475 VLVILNTKSVVKKLYETLRQQHPDE-EVIHLSTAMCAAHRMDILRTINQRL----EQGER 529 Query: 630 RILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPD 689 I ++TQ++E +DV F +I D + Q GR +RH R + + L Sbjct: 530 IICISTQLIEAGVDVSFACVIRSLAGLDSIAQAAGRCNRHGEVARQTVYLVDHIEENLKH 589 Query: 690 GEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNG 749 R + I + + + + + +L A ++ +YD +E++ + Sbjct: 590 LPEIARGKEIVRAILIDFLRDE---QSYEGNLLGTVAMTRYFQELYDASEVE----LDFP 642 Query: 750 MDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLL 809 + FK RKV E L T+ + E + GK+L+ Sbjct: 643 IRGTTLTLAPMLFKPRKV----PELILSSRHRTVANHFKVIEDMTETVLVPYGEEGKRLI 698 Query: 810 DGQVYEDLSHEQQYEALA---LNRVNVPFTWKRSFS-----EVVDEDGLLWLEGKQNLDG 861 + E + L +N+ ++ V+ + +L L + D Sbjct: 699 -ASLNGQADWEDLRKWLKQAQQYSINLHAHERKKLEATQGLNVILDGTVLVLSERAYDDH 757 Query: 862 W 862 + Sbjct: 758 Y 758 >UniRef50_C8VZL0 CRISPR-associated helicase Cas3 n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VZL0_DESAS Length = 836 Score = 306 bits (784), Expect = 2e-81, Method: Composition-based stats. Identities = 149/915 (16%), Positives = 266/915 (29%), Gaps = 134/915 (14%) Query: 10 YWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLF 69 YW + L H VAA+A V F + VK + Sbjct: 3 YWAHYDQEKEIKQT---LKEHLSSVAAMAR----DRVSPGVQFKD---IPSSIVKELAYW 52 Query: 70 FIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSE 129 HD+GK+ FQ ++ H L Sbjct: 53 MGYFHDLGKYTDYFQDYLTKNKKSKFKE----------------HAHISACCVYSFLLDR 96 Query: 130 QSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQ 189 F + F HHG + SR + L A + Sbjct: 97 VID------FSDDWQKKITAFLIYLCSRKHHGTLSLEGLFSISREKEIWKLLQAAEYNLL 150 Query: 190 AREEWIS------------VLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTT 237 + I L+ + + L +G W Sbjct: 151 EKLPVILQDAGLSDRISGVELKKYLSVDVLIKSKSLARTGQYLNSGRGEDERWFFLAIYL 210 Query: 238 NTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQL- 296 + L + D + D L K N + L Sbjct: 211 FSLLIDSDKLDSGGLKPGEVKSCPSDQVSKYLNKKLEQLKDKRNVSLWERRNNARKTMLG 270 Query: 297 --QVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQ-----QIADSVIFALPTQAT 349 + L D G I APTG GKT ++L A L ++ + +I A+P Sbjct: 271 IIEGLSDEEIKGTGFFTITAPTGIGKTLSSLQCALCLQERIKVLEKYTPRIIAAIPFINI 330 Query: 350 ANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQ 409 + +F ++ H + ++ +EE V + Sbjct: 331 IEQN----KKEYEQVFGKELKLIVHHR---------LGDFSVQASSREEISVDQ----AL 373 Query: 410 SNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLG-IGRSVLIVDEVHAYDTYMNGLLEAV 468 + + G + + T Q+ S++ +R ++ + S++I+DE A Y L+ AV Sbjct: 374 LEVESWEGDVILTTFVQLFQSIITGNNRLLKKFNKLACSIVILDEAQAVPEYYMPLIGAV 433 Query: 469 LKAQAD-VGGSVILLSATLPMKQK--QKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRF 525 L+ + +G IL++AT P + LL + G V + Sbjct: 434 LQKMTEFLGTRFILMTATQPKILEFGNLLLGSSGGKAKAVPLLPDFEG------------ 481 Query: 526 DLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQ 585 + E+L + + + L LE + V ++ N + + Y+ Sbjct: 482 ----YFEKLTRTKFVS---LLKKNRLDTGAFLELFQEKWDGKKSVLIVVNTIKRSIEVYR 534 Query: 586 RLKELNNT---QVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSL 642 +K+L + + RRE V + ILV+TQ +E + Sbjct: 535 EIKKLLKDQACNIPVCYLSTNIMPRQRREVIKNVKDKL----ENKETVILVSTQTIEAGV 590 Query: 643 DVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSN 702 D+DFD P D L Q GR++R RK +PV + L Y +Y Sbjct: 591 DLDFDMAFRDFAPIDSLIQTAGRVNREGRKGE----YLPVYIVQLESDNHY-----VYEL 641 Query: 703 VRVMWRTQQHIEELNGASLFFPDAYRQWLDSIY-----DDAEMDEPEWVGNGMDKFESAE 757 T + ++ + Y + D Y E G+ K + Sbjct: 642 THRHS-TMKLLQAADEIK---EPQYGRLADEYYTLALARGISDRSKELWQEGIMKLNFEK 697 Query: 758 CEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQ------LLDG 811 ++ + + + + E L T+ LL Y + + ++D Sbjct: 698 LKEFQLIQNTGEVVDVFV-----EDCLKATQLANAYEELLRYKEYDLSCESGALSKVIDK 752 Query: 812 QVY----EDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGN 867 V LS ++ L L V + + E+ + + +++ ++ Sbjct: 753 GVIPNCNGKLSVFERKAILRLILAKVSDFIIQVRVSRLKENRPVEFRVRGDVESSMYWIP 812 Query: 868 SIV--ITYTGDEGMT 880 Y + G Sbjct: 813 PGQKKEYYDDETGFI 827 >UniRef50_B1C2J7 Putative uncharacterized protein n=1 Tax=Clostridium spiroforme DSM 1552 RepID=B1C2J7_9FIRM Length = 720 Score = 306 bits (784), Expect = 2e-81, Method: Composition-based stats. Identities = 142/740 (19%), Positives = 245/740 (33%), Gaps = 154/740 (20%) Query: 61 QRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLY 120 ++ + I HDIGK + FQ K + + HG Sbjct: 43 EKFDKMIELSIKYHDIGKVNTIFQEKMRGHY----------------TNDEIPHGYLS-- 84 Query: 121 WFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHH--GFILHSQDQDKSRWEMPA 178 L F + + + + +V HH G L + ++ S+ Sbjct: 85 ----------VLAVDFKKIGFSRKEIKEFKIIINSVFYHHRRGEFLKDRIKEFSKAYYEE 134 Query: 179 SLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTN 238 L++Y D + ++ P ++ ++ G + DW S Sbjct: 135 QLSNYLG-DNYYNLSYANLNLIYPRNPTSTITDE-EWIEFVIVKGILNRCDWSASG---- 188 Query: 239 TFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQV 298 L + + + + +Q Sbjct: 189 ---------------------------------NLAIEIEAEQSMKDNILKRFDLNSVQK 215 Query: 299 LVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRME 358 + I A TG+GKTE AL + + F LP + +ANA+ R++ Sbjct: 216 FMMENYNENVA--IVASTGAGKTEAALLWL-------NDEKGFFTLPMKVSANAIYQRIK 266 Query: 359 A-SASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLG 417 + + + + HG+ + + N + Sbjct: 267 EHYLLPINNQNRVAILHGDCYKLYD---------------------NDLANYHNARNLAY 305 Query: 418 QIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGG 477 + VCTIDQ+ + S +I+DE+ AY M + LK +GG Sbjct: 306 PLTVCTIDQIFKFAYKALGTEHLLATLKYSKVIIDELQAYSPDMLATIITALKYIHKIGG 365 Query: 478 SVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPR 537 +++ATLP +L + R Sbjct: 366 KFAIITATLPQFILDELS--------------------------TCNIKYKRFIGNINNR 399 Query: 538 FSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDI 597 I I DML D L+ ++ A ++ +ICN V+ AQ Y +L EL ++ +I Sbjct: 400 HKI---TIHEDDMLND---LDNILDDAKT-KKILVICNTVNSAQKLYTKLLEL-DSNTEI 451 Query: 598 DLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPAD 657 L H+R+T R+ E+ VI K N I V+TQ+VE SLD+DFD L T D Sbjct: 452 HLLHSRYTKKHRQILEDDVIEF----SKSNRTGICVSTQIVEASLDIDFDVLYTYLSSID 507 Query: 658 LLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELN 717 L QR+GR++R I V DG G + IY RT +++ + Sbjct: 508 SLIQRMGRVYRKRENINQ---LINVNIYTFKDGIGCVYDKIIY------ERTLDILKDYH 558 Query: 718 GASLFFPDAYRQWLDSIYDDAEMDEPEWV------GNGMDKFESAECEKRFKARKVLQWA 771 +F + + +D +YD E+++ ++ + + + EK K Sbjct: 559 N-QMFLEEEKIKCMDRVYDRKELEKTRYMKIYNEKKEYLKDLIALQVEKSEVDNKFRNIN 617 Query: 772 EEYSLQDNDETILAVTRDGE 791 Y L + + V + + Sbjct: 618 SIYILPERFYNLKEVEKLID 637 >UniRef50_Q39WS0 Metal dependent phosphohydrolase n=6 Tax=Bacteria RepID=Q39WS0_GEOMG Length = 722 Score = 306 bits (784), Expect = 2e-81, Method: Composition-based stats. Identities = 113/828 (13%), Positives = 207/828 (25%), Gaps = 171/828 (20%) Query: 19 TKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIA-LHDIG 77 + +H L H A A F + HD+G Sbjct: 10 AEDGRVHGLEEHLCGTAYFAAA-----------FAGEFGCAG------WGRLAGIWHDLG 52 Query: 78 KFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFS 137 K+ FQ + +H +AG + Q Sbjct: 53 KYSHEFQRYI------------------LDDGPRTDHSSAGALYAVQ------------- 81 Query: 138 FFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISV 197 + V GHH +L D S E + A+ + + Sbjct: 82 ------RLGKLGRVIAYLVAGHHAGLLDWADNTGSNLERRLTSTDLLARVVLSELPPNLL 135 Query: 198 LEALFLTPAGLSINDIPPDC-SSLLAGFCSLADWLGSWTTTNTFL-----FNEDAPSDIN 251 + + D+ +L AD+L + N + Sbjct: 136 EQQIPAERPKPPATDLTASLWLRMLFSCLVDADFLDTEAFFNPAPVGQRSRFPTIEELLP 195 Query: 252 ALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTV 311 Y D+Q A N + L+ V +PG Sbjct: 196 LFDAYMADKQATA-------------------FDTPVNRLRAEILRQSVGKAFHSPGFFS 236 Query: 312 IEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLI 371 + PTG GKT +++A+A +I+ +P + + +++ Sbjct: 237 LTVPTGGGKTLSSMAFALNHARAHGKRRIIYVIPYTSIIEQTADQFREVF-----GDSVV 291 Query: 372 LAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISV 431 H N + + + + + + V T Q S+ Sbjct: 292 EHHSNVARQDSDEEGQR-------------------LRLASENWDAPVIVTTSVQFFESL 332 Query: 432 LPVKHRFIR-GLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQ-ADVGGSVILLSATLPMK 489 + R I SV+++DE + LK + G +V++ +AT P Sbjct: 333 FASRTSRCRKLHNIVNSVVVLDEAQLLPPDFLNPILEALKELQKNYGTTVVICTATQP-- 390 Query: 490 QKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLAD 549 G H + P I + A+ L R Sbjct: 391 -------ALGPHQSANFDFKGIPEITEIMDDPAKLHVKLKRTRIHKLR------------ 431 Query: 550 MLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDR 609 + + I N D A+ ++++ + A R Sbjct: 432 -DLAPVSWDELAEELEWQDSALCIVNRRDDARTLWEKMPK------GTIHLSALMCGAHR 484 Query: 610 REKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRH 669 K + + +++TQ+VE +DVDF + D + Q GR +R Sbjct: 485 ARKIAEIKERL----RNREPTRVISTQLVEAGVDVDFPIVYRAAAGLDSIAQAAGRCNRE 540 Query: 670 HRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQ 729 + + H+ + + + E L + Sbjct: 541 GLLEWGE--------VFVFTPPSKIPAGHLQQAAGI---GMRLLAEAESDPLSMER-FEA 588 Query: 730 WLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRD 789 + Y M + + RF R + ++ L D + + Sbjct: 589 FFREFY---WMRGDRLDRENIIGLLRNDVGLRFSFRTAAR---KFQLIDESAQAPVIVQF 642 Query: 790 GEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTW 837 L L Q L + VN+P Sbjct: 643 ENDELLSLLERQGP---------------ERWLLRKLQRSVVNLPRYL 675 >UniRef50_B9L1B9 CRISPR-associated helicase Cas3 domain protein n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L1B9_THERP Length = 773 Score = 306 bits (784), Expect = 2e-81, Method: Composition-based stats. Identities = 150/780 (19%), Positives = 260/780 (33%), Gaps = 102/780 (13%) Query: 27 LIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYK 86 L H L+V A + L + + + + L A HD+GK + FQ Sbjct: 16 LRQHTLEVLAYVEQVIPAYRALWSRVLDSRSV--DHLGRALPLAAAGHDLGKAALGFQRS 73 Query: 87 SAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPY 146 E +F H + G Sbjct: 74 LQER----------------GFRWEFRHEVLSAALLLASGHATGDPGQLA---------- 107 Query: 147 ESWFPWVEAVTGHHG--------------FILHSQDQDKSRWEMPASLASYAAQDKQARE 192 + AV HH + Q +K++ + A + Sbjct: 108 ------IAAVLTHHRDLTEERLWRDCGVPQLPRPQFLEKAQRQFRERAAELGPFWEWIVR 161 Query: 193 EWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINA 252 + +E L S +D+ P L AD L + F E ++ Sbjct: 162 -FSQEVEVLRTDQWPCSPHDLEPPAE-FLRSLQERADRL------HAFRSAEGLLLTLSR 213 Query: 253 LRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVI 312 D A +S + + R QL+ AL G ++ Sbjct: 214 GWLLAADHAASAGIPRFVSTIPTEWRARHAERLAHSRAQGDGQLRAFQRALGEYEGSALL 273 Query: 313 EAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLIL 372 APTG+GKT+ A+ + + ++ + + + LP QA+ AM + LF + Sbjct: 274 IAPTGAGKTDAAIRWIAR--NRIGGERIFYILPYQASIEAM----GQTLERLFGRETVGT 327 Query: 373 AHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVL 432 H + + G + ++ I V T Q++ + Sbjct: 328 LHARTLEVAFQRYF-------SGDDYEEAYQAARQDAELNRLVHKPIKVTTPFQLIKWLF 380 Query: 433 PVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQ 492 + + + +++I DE+HAYD ++ L+ +++ ++G + +SAT P +Q Sbjct: 381 GLPRFEVGLAEMVGALVIFDEIHAYDAHVTALILELVRVLRELGARCLFMSATFPDFLRQ 440 Query: 493 KLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLP 552 + D Y R D + RF Q P Sbjct: 441 YIEDAYAQPLRLF------------------RLDQPPAHDTWAERFLAQARHRVEWTADP 482 Query: 553 DLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREK 612 +++ ++ AA G +V ++ N V AQ YQRL E + L HAR DR + Sbjct: 483 LEELVDLVVEAAQNGERVLVVANRVQQAQALYQRLVECVPDGLQ--LLHARLMRRDRVAR 540 Query: 613 ENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRK 672 E R+++ R+LVATQVVE SLD+ FD L+T+ P D L QR GR++R++ Sbjct: 541 EQRILAALRGESPEP-VRVLVATQVVEVSLDISFDRLVTEVAPVDDLLQRFGRVNRYYEH 599 Query: 673 YRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLD 732 P I YG + + + RT + A QW++ Sbjct: 600 NSPRPIVISRT---------YGDALYYVYDRERLERTLEEAPPHGHA--LDAFDAEQWVE 648 Query: 733 SIYDDA-EMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGE 791 +Y + +E + F + R + + + Y L E + + ++ Sbjct: 649 RVYREGWTTNEGRRFEQALASFRAVIEGLRPLQHADMAYEDFYRLFQGAEVLPSPFQEEY 708 >UniRef50_B0KB27 CRISPR-associated helicase Cas3 n=7 Tax=Bacteria RepID=B0KB27_THEP3 Length = 784 Score = 306 bits (783), Expect = 2e-81, Method: Composition-based stats. Identities = 139/881 (15%), Positives = 279/881 (31%), Gaps = 139/881 (15%) Query: 25 HL---LIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDI 81 H L H ++ + + ++++ + ++ K+ HD GK Sbjct: 10 HPDKFLEDHLINTSKIIRSYFNE--------KKVAIIDKETFLKTATIISLCHDFGKATN 61 Query: 82 RFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDA 141 FQ K ++ + +H +E + D Sbjct: 62 YFQKYLFTENEKERNKLKTME--------EMHHSLLSAVVAFYLVKNEINAQDRKGIL-- 111 Query: 142 APHPYESWFPWVEAVTGHHGFILHSQD---QDKSRWEMPASLASYAAQDKQAREEWISVL 198 F V HHG + + + D E+ + +K Sbjct: 112 ------FPFIAFLIVKNHHGDLKNVFNEVILDDKELEVLKKQLNSIDDEKLQVLNGKLRN 165 Query: 199 EALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRT--- 255 L +IND +S L L + +L S + Sbjct: 166 AGLNENLTKSAINDYIDSINSELRKIKRELRRLKEEQDVSIYLLLNFLFSLLVDADKTEV 225 Query: 256 -YFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEA 314 D + E + K + + ++ + +VL + + + I Sbjct: 226 VVGIDNIKRPEIKFEEQLVKEYKASFPDKESKINLLREEAYKEVLEKDIDIKQKIMSINL 285 Query: 315 PTGSGKTETALAYAWKLIDQQIAD-----SVIFALPTQATANAMLTRMEASAS--HLFSS 367 PTG GKT T +A+A KL + + +I++LP + +E + Sbjct: 286 PTGLGKTLTTIAFAMKLWAKLYKETGVKYRIIYSLPFLSIIEQNSNVLEDLLRYNGIQPD 345 Query: 368 PNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQV 427 +IL H HL ++ TE E+A + W S+ I + T Q Sbjct: 346 TEIILKHH-----HLSDIRYTKNNTEFEDEQAKILIEGWNSE---------IIITTFVQF 391 Query: 428 LISVLPVKHRFIRGLG-IGRSVLIVDEVHAYDTYMNGLLEAVLKAQA-DVGGSVILLSAT 485 +++ K++ +R + S++I+DEV + L + +LKA A ++ +I ++AT Sbjct: 392 FHTLVSEKNKTLRKFHRLANSIIILDEVQSIPFKYWLLTKELLKAVANELNSYIIFVTAT 451 Query: 486 LPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPI 545 P+ +++ YPL+ + D + +L +++ Sbjct: 452 QPLIFREE---------------EIYPLV--AKTKYFTQMDRVEIIPKLSRDITLEELSE 494 Query: 546 CLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFT 605 N G I N + AQ Y L+ +I Sbjct: 495 MFD---------------LNDGKSYLFILNTIKSAQQFYNILRAKIP-NDEIIYMSTHVV 538 Query: 606 LNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGR 665 +R E+ ++ K R V TQ+VE +D+DFD ++ P D + Q GR Sbjct: 539 PMERMERIEKI--------KEGKIRFAVTTQLVEAGVDIDFDVVVRDIAPLDSINQSAGR 590 Query: 666 LHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPD 725 +R+ R + V + L D +G +++Y + ++ T++ + + + Sbjct: 591 CNRNWRG------KGEVYVVSLIDEKGQKYSKYVY-DKILLGITREILSKYDTIK---EQ 640 Query: 726 AYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDND-ETIL 784 + ++ Y + N + A R+ + ++ L ++D + Sbjct: 641 ELLKIIEKYYQEVSERMSS---NEGRELLDAIYTLRYDSEDGNMCISKFELIEDDYYKVD 697 Query: 785 AVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHE--QQYEALALNRVNVPFTWKRSFS 842 A + + L +L D + + + + +++P T Sbjct: 698 AFIELNDEAKEL-----WHKYVELKDIKNLFERRNIFNRFKADFYKYVISIPAT------ 746 Query: 843 EVVDEDGLLWLEGKQNLDGW---VWQGNSIVITYTGDEGMT 880 D W +S+ Y + G Sbjct: 747 -----------VENMPPDIWGFKYVNYDSLNDYYDKETGFI 776 >UniRef50_UPI0001C41C2F CRISPR-associated helicase Cas3 n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41C2F Length = 941 Score = 306 bits (782), Expect = 4e-81, Method: Composition-based stats. Identities = 121/801 (15%), Positives = 247/801 (30%), Gaps = 83/801 (10%) Query: 57 MLSKQRVKAWLLFFIALHDIGKFDIRFQYKS-----AESWLKLNPATPSLNGPSTQMCRK 111 L+ + + + HD+GK FQ K + S + Sbjct: 66 HLTFEEFNFLIEECVRFHDVGKLSFNFQLKRLNKNNPAKKKEQINVLKKFGLDSILNQFE 125 Query: 112 FNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDK 171 NH +G L ++D P + + GHH + QD Sbjct: 126 GNHSLSGA------------LSFLSKYYDVLPKNELFFLILAYVIIGHHTNLKDIVSQDD 173 Query: 172 SRWEMPAS-----------LASYAAQDKQAREEWISVLEAL---FLTPAGLSINDIPPDC 217 ++ + +++ + + FL + Sbjct: 174 FFYKEFEENQALSTTLKFFALFFGLNQSTINQKFFQEINDIGFDFLENTINHYDSSFSFF 233 Query: 218 SSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNK 277 S + AD L + N+ + + + F + V L++ Sbjct: 234 YSYIYSLLISADSLATSEYKNSTDQIDYSKFNHRISDKLFAHMYKSFYNVKHNRNLLNET 293 Query: 278 RCYEGVHALLDNGYQPRQLQVLVDAL-----PVAPGLTVIEAPTGSGKTETALAYAWKLI 332 + N + L + L + + PTG GKT T++ A ++ Sbjct: 294 FNLNDICPEDINVLRKAMLLESSETLNNALMDDDKKIFFLNMPTGGGKTNTSMKLALDMV 353 Query: 333 DQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAIT 392 A+ +I+A+P + S N+ + S ++ I Sbjct: 354 KNTDANRIIYAMPFINIIEQNFDVICKSFGLNEEEGNIRQIYSASETIFNKSDEETLEII 413 Query: 393 EQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVL-PVKHRFIRGLGIGRSVLIV 451 F + T + ++ K R + SV+I+ Sbjct: 414 LSDD-----------------FFNYPVICTTFVSLFNPIIKNNKKYKYRLNALSNSVIIL 456 Query: 452 DEVHAYDTYMNGLLEAVLKAQ-ADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSA 510 DE+ + L ++ +++SATLP K KL + + Sbjct: 457 DEIQSLPLRNWVSLYFIINELSEKYNIYFLIMSATLPSFDKLKLENI---------RDDD 507 Query: 511 YPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAG-AQ 569 L H + + + + D LE + + + Sbjct: 508 NFLNYNNVSLINNPEKYFNHDLFSRTNINGGIKKLGINDDCSIDYFLEIIRENFSQDYNK 567 Query: 570 VCLICNLVDVAQVCYQRLKELNNT-QVDIDLFHARFTLNDRREKENRVISNFGKNGKRNV 628 ++ N + +++ Y +LK+ + DIDL ++ N R+ +++ N + Sbjct: 568 GLIVLNTIKSSRLIYDKLKDFSQEYNFDIDLLNSSILPNRRKNIIHKI------NQEDLS 621 Query: 629 GRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRP--AGFEIPVATIL 686 IL++TQ +E +DV FD++I D + Q GR +R ++ Sbjct: 622 NYILISTQSIEAGVDVSFDFVIRDFSILDSIEQVRGRCNRSRELNDKFHDSNIKGNVYLI 681 Query: 687 LPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLD--SIYDDAEMDEPE 744 + + +++IY +V + R ++ I N D Q+ + + YD+ +D + Sbjct: 682 NLEDDNSNLYKYIYKDVELKTRIKETINLFNEGFELNDDLNYQYSNILTYYDNVSLDIND 741 Query: 745 WVGNGMDKFESAECEKRFKARKVLQWAE-EYSLQDNDETILAVTRDGEMSLPLLPYVQTS 803 + + R R ++ W + +YS + I + D + +P Sbjct: 742 VHDS------MDQSFLRNDRRNIVFWNKMKYSKIQKKKGIHIILNDLKQYSIFIPLDIKI 795 Query: 804 SGKQLLDGQVYEDLSHEQQYE 824 L + ED+ + E Sbjct: 796 YDDSLNLDKTIEDMDLNELRE 816 >UniRef50_UPI0000F51764 CRISPR-associated helicase Cas3 n=1 Tax=Ferroplasma acidarmanus fer1 RepID=UPI0000F51764 Length = 746 Score = 303 bits (776), Expect = 2e-80, Method: Composition-based stats. Identities = 140/785 (17%), Positives = 270/785 (34%), Gaps = 130/785 (16%) Query: 58 LSKQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAA 117 + + +A HD GK D FQ + + + + H Sbjct: 47 IDNNNFWIHAFYAVAFHDFGKLDKSFQDMINKVIQQDPGD-------KVDIPKALPHALI 99 Query: 118 GLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMP 177 F+ + +++ V HH + + + S Sbjct: 100 SAIALLN--------------FEENNYLFDNIPISSICVLTHHSMLKDNLFERNSNLSNM 145 Query: 178 ASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTT 237 Y+ +E+ + P +IN D ++ G Sbjct: 146 NLYD-YSDFISFVNKEFKEI---FNTDPYKFNININNVDYKKIIKGI---------HNKI 192 Query: 238 NTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQ 297 + + + +AS L + + L N +L Sbjct: 193 IEYYEKDKLRIMYIIIENIIHMCDWNASS---NKSLNMDIDYDNKICMYLQNRPDFNKLN 249 Query: 298 VLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRM 357 L + +I++PTGSGKTE +L + + +++ LPT T+N + R+ Sbjct: 250 ELQIFMQENNDNYIIQSPTGSGKTEASLLW-----SKYNNGRIVYILPTMVTSNKIFERL 304 Query: 358 EASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLG 417 + + + + H S + + ++ K F Sbjct: 305 KQIFGDI-----VGIQHSTSLLL----------MDTDIDADKNNYNHDAFARFYYKTFSS 349 Query: 418 QIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGG 477 I V T+DQ+L S+ + G S +I DE+HAYD Y L+ + Sbjct: 350 PIMVSTVDQLLYSLFNINRWDSVFFNSGISNVIFDEIHAYDPYTTSLIIEYINKAHIFNQ 409 Query: 478 SVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPR 537 V+++SAT+P K + + + FD+ R Sbjct: 410 RVLIMSATIPDILKDFI-----------------KCKTKKINFVDKEFDINEI------R 446 Query: 538 FSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNN-TQVD 596 +++ + + + + + + +I N + A+ Y ++++++ Sbjct: 447 YNVNVIDGDINNSIDIIKKHKDIKKI-------LVIANTIKTAKYLYSQIRDIDEIKDKK 499 Query: 597 IDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPA 656 + LFH++FT NDR+EK + ++ I +ATQVVE SLD+DFD LITQ P Sbjct: 500 VVLFHSQFTYNDRKEKSELL--------EKEDNIIAIATQVVEVSLDIDFDLLITQIAPP 551 Query: 657 DLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEEL 716 D L QR GR++R +K F +++Y N +M +T + + Sbjct: 552 DALIQRFGRVNRRGKKGNTKIFIYKNC----------ENDKYVYKN-ELMKKTFDYFNKY 600 Query: 717 NGASLFFPDAYRQWLDSIYDDAEMDEP-----EWVGNGMDKFESAECEKRFKARKVLQWA 771 N S ++ ++ IY+D E E V N + + + + + +K Q A Sbjct: 601 NYKSNT---DSKKLINEIYNDNEYKENLKNAYTEVKNKIYEIQVEDLKSVYKFNIEEQIA 657 Query: 772 EEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRV 831 E+++L + + + +P ++ Q + +YE ++ + Sbjct: 658 EKHNLI---------RKISYIKILCIPDKYYNNVFQAYEKSIYEG------WKEFLKYSL 702 Query: 832 NVPFT 836 N+P+ Sbjct: 703 NIPYE 707 >UniRef50_C9M4E9 CRISPR-associated helicase cas3 domain protein n=1 Tax=Lactobacillus helveticus DSM 20075 RepID=C9M4E9_LACHE Length = 809 Score = 303 bits (775), Expect = 2e-80, Method: Composition-based stats. Identities = 147/858 (17%), Positives = 268/858 (31%), Gaps = 170/858 (19%) Query: 61 QRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLY 120 + L + HD+GK ++RFQ K + H + Sbjct: 64 KDDWRLLEIACSYHDLGKMNLRFQKKVKAGQSFC--------------KGEIPHALLSIT 109 Query: 121 WFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASL 180 D L + + + + A+ HH + E+ A Sbjct: 110 MLPIDELQKH-------------YTKDQIIALIFAIKWHHERNFSEIYEKHYEDEIEALK 156 Query: 181 ASYAAQD----------KQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADW 230 +A+ D ++ + L + D +L G + D+ Sbjct: 157 KEFASFDYSKSSFPIPPQEPAKVDSKYLTGNLSHRLSPNYEPKIYDEFVILKGLLNRIDY 216 Query: 231 LGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNG 290 S Q+ + V++ + Sbjct: 217 AASGHYEIESKSRV--------------CLSQNILQEWHKKNPVADWNELQKY------- 255 Query: 291 YQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATA 350 V+ TG GKTE+AL + F LP ++ Sbjct: 256 -----------TYDHRNESIVVVGQTGLGKTESALRWLDN-------SKSFFVLPLKSAI 297 Query: 351 NAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQS 410 N++ R+ S NL L H + + +++ + E EE + Sbjct: 298 NSIYDRISGIVFQNKSHENLALLHSD----MMAKALSEKFDDEDNFEE---------FVN 344 Query: 411 NKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLK 470 ++ + Q+ V T+DQ+ V K+ + + + +++DE+ Y + G L L Sbjct: 345 EERSWSKQLSVATLDQIFNFVYHYKNYEPKLATLAYAKVVIDEIQMYSPDLLGYLIYGLG 404 Query: 471 AQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAH 530 GG +++ATLP LL++ GL + P +N R Sbjct: 405 EIQKFGGKFEIMTATLPPFLID-LLESNGLEFKQAPHPFLDPKVNHR------------- 450 Query: 531 PEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKEL 590 + + + I D++ + + ++CN V A Y LK+ Sbjct: 451 -----HKVKVLHKQINSDDIIN-----------LDRHQKTLVVCNTVKSATELYSELKQK 494 Query: 591 NNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLI 650 + D+ L H+RF DR E+E ++ K + + I + TQVVE SLD+DFD LI Sbjct: 495 GVS--DVHLIHSRFIRKDRNEREKEILEFGQK--ENHSSGIWIGTQVVEASLDIDFDMLI 550 Query: 651 TQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQ 710 T+ LFQR+GR +R R Y + V G + Y + R Sbjct: 551 TELSELCGLFQRMGRCYRK-RNYEGKEPNVYVFDGGDKLTSGIHESKQEYDDKRYHSVVD 609 Query: 711 QHIEELNGASL------FFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKA 764 H+ E++ +L + +D Y DK C+ K Sbjct: 610 YHLFEISKRALAQVDGYLTESDKLKLIDENYTT-------------DKLLDENCQLIDKV 656 Query: 765 RKVLQWAEEYSLQDN---DETILAVTRDGEMSLPLLPYVQTSSGKQLLDG------QVYE 815 + + + + DN E ++ R+ ++ ++P K L+ Sbjct: 657 NDCIDYLNDLTFLDNLKTKEEVVNTFRNI-NTIDIIPEQVFLENKDKLEAAAKALNNYIR 715 Query: 816 DLSHEQQYEALALNRVNVPFTWK--------------RSFSEVVDEDGLLWLEGKQNLDG 861 Q E +++ V K ++V +D + + L+ Sbjct: 716 REDFLDQTEYKKQHQILVKEKIKAREVINNYLVGIPLYIINKVSKQDRWIK---DKALNE 772 Query: 862 WVWQGNSIVITYTGDEGM 879 + Y G+ Sbjct: 773 VGYNILPADFNYDSMTGL 790 >UniRef50_B9YDC8 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YDC8_9FIRM Length = 842 Score = 302 bits (774), Expect = 3e-80, Method: Composition-based stats. Identities = 130/918 (14%), Positives = 276/918 (30%), Gaps = 143/918 (15%) Query: 18 LTKGNDIH---LLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALH 74 H L H +VA + + L + LH Sbjct: 4 AHWDGKEHRAQSLKDHSENVARIMEE-------------NCFSLGLTSTGRLIGL---LH 47 Query: 75 DIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGD 134 D GK + FQ E+ T+ K NH AAG + Sbjct: 48 DAGKANPVFQQYMLEN--------------QTEKKGKINHSAAGAQILRNLFFGTEF--- 90 Query: 135 FFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEW 194 + + A+ GHH + D P A +++ + + Sbjct: 91 WTMPKKQQQFRILLFQLCSIAILGHHRGL---MDIYDPNGNSPFERMLNAEENQLVHDSF 147 Query: 195 ISVLE-----ALFLTPAGLSINDIPPDCSSLLAG--FCSLADW----------------- 230 + L F+ A I + + L+ G F D Sbjct: 148 FNELNCKEEINQFIEKAQNEIIQLNTRINILVKGHSFEINDDKLKKAKLEEGMFTYGLIE 207 Query: 231 -------LGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGV 283 + S ++ + + Q+ ++ L + ++ Sbjct: 208 RFLFSSLIDSDRLDTACFLDKKNIPVEENRIEIWAELQERLNKEL-----LGLEKLNPSQ 262 Query: 284 HALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADS-VIF 342 + N + R + ++A G+ +++ TGSGKT +L A + +I+ Sbjct: 263 ASSTLNQIRKRVSKSCLNAGNWPSGIYRLQSITGSGKTLASLRLALQHACNFPETKHIIY 322 Query: 343 ALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQ 402 +P + ++ + + H + + ++ I + Q Sbjct: 323 VIPFLSILLQNSQTIKETLH--------LEEHSD-WILEHYSDFENELINASTDDNLQKQ 373 Query: 403 CCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLG-IGRSVLIVDEVHAYDTYM 461 + + + I + ++ + + + + +R L + SV+I DE+ + Sbjct: 374 EELQEYELRTERWDSPIIITSLVHFMDTFFSARKKDVRRLHQLSNSVIIFDEIQSIPDNC 433 Query: 462 NGLLEAVLKAQADV-GGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVN 520 G+ + L + V+L SAT P+ +K K + S Y I+ Sbjct: 434 IGMFNSALNMLEHLTDVKVVLCSATPPLLEKIKHPLQW----------SQYKDIDTNYSK 483 Query: 521 GAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVA 580 ++ + ++ + E + E + I N V A Sbjct: 484 DMKKIHRVFVTDKTDVQNCFSVE-----------RIAELAYEKQQERSNALTIMNTVSGA 532 Query: 581 QVCYQRLKELNNTQVD-----IDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVAT 635 ++ LK+ + + L + ++ + ++I+ K N+ + V+T Sbjct: 533 TRVFECLKKKFEQIPERNRPLLILLTTNLCPDHKKRRIQQMINAL----KENIPVLCVST 588 Query: 636 QVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGR 695 ++E +D+ FD ++ D L Q GR +RH K I E + Sbjct: 589 SLIEAGVDISFDVVLRACSGLDSLIQAAGRCNRHDHKKLGELIVFYSYEI-DFMHESITK 647 Query: 696 HEHIYSNVRVMWRTQQHIEELNGAS------LFFPDAYRQWLDSIYD------DAEMDEP 743 + + R + + +++ A + A + Y+ D + Sbjct: 648 NTTVSQLTRKLICSHCLLDKFKKAPEDFENNILSNKALEMYYSRYYEMIQDRVDYPVTSQ 707 Query: 744 EWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTS 803 + ++ F S C + KA+K + + V D + + L+PY + Sbjct: 708 GFTLYDLNSFCSCWCTEISKAKKSDVNWMMHQAFETAGRYFKVIEDYSIGV-LVPYEKGR 766 Query: 804 S-GKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGW 862 ++L G + + L N S+ ++ + D + Sbjct: 767 ELIEELNSGNIKFQPDN---LRKLKRQAQNYSVNLNESYIRKHKQNFSY----FEAADLY 819 Query: 863 VWQGNSIVITYTGDEGMT 880 + Y ++G+T Sbjct: 820 CLKE----GCYDEEKGVT 833 >UniRef50_Q2RW66 CRISPR-associated helicase, Cas3 family n=5 Tax=Alphaproteobacteria RepID=Q2RW66_RHORT Length = 752 Score = 302 bits (774), Expect = 3e-80, Method: Composition-based stats. Identities = 109/784 (13%), Positives = 218/784 (27%), Gaps = 122/784 (15%) Query: 9 HYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLL 68 Y+ S ++ H L F ++ ++ Sbjct: 1 MYYAHSLETGGDKTRWQPAADHAFATG-----------HLAAGFAQSFGA--EKAARLAG 47 Query: 69 FFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLS 128 LHD+GK+ FQ + + + +H AG Sbjct: 48 L---LHDLGKYCRAFQARLEGAPER------------------VDHATAGAITVRA---- 82 Query: 129 EQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDK 188 + + GHHG + Q + A L+ + Sbjct: 83 -------LLAGSSDRWDRTLGEILSYVIAGHHGGLPDWQGLAD---RLKADLSGLDPVWR 132 Query: 189 QAREEWIS-VLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAP 247 + +L P+ + ++ AD+ + + +A Sbjct: 133 DEIAVAPQGLAPSLTPHPSKERLPFQLAFLGRMIFSCLVDADFKDTEA-----FYEREAG 187 Query: 248 SDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAP 307 + + L ++ K G + L ++ Sbjct: 188 TRSDRLWPLLPAIIDRLIARFNDH--MATKAPLAGEPVSAVTLLRQDVLAQARARAAMSE 245 Query: 308 GLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSS 367 GL + PTG GKT +L +A + + +IFA+P + + Sbjct: 246 GLFTLTVPTGGGKTLASLGFALDHAKRHGLERIIFAIPFTSILDQTAAVFRDVL----GE 301 Query: 368 PNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQV 427 ++ H + + + + + + + + T Q+ Sbjct: 302 GVILEHHSAIEAEEKARREPPQQRDK--------------LRLAMEDWAAPLILTTTVQL 347 Query: 428 LISVLPVKHRFIRGLG-IGRSVLIVDEVHAYD-TYMNGLLEAVLKAQADVGGSVILLSAT 485 S+ + R L I RSV+++DE + + A+ + + SV+L +AT Sbjct: 348 FESLFANRPARCRKLHSIARSVIVLDEAQTLPLPLLKPCVAAIDELTRNYKASVVLCTAT 407 Query: 486 LPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPI 545 P +++ + D P+ + + Sbjct: 408 QPALDRRRFAAGDDMGLDLAGRE--------------------LAPDPGALAARLVRVTL 447 Query: 546 CLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFT 605 A +L D ++ + Q +I N A Y+R E + R Sbjct: 448 RQAGVLSDEDVVTDLADP----PQALVIVNTRKHALALYRRAVEAGLEG--VVHLSTRHY 501 Query: 606 LNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGR 665 RR + V R + L+AT +VE +DVDF + D + Q GR Sbjct: 502 GAHRRAILDDVRQRL----DRGLPCRLIATSLVEAGVDVDFPRVWRAEGGLDQIAQAAGR 557 Query: 666 LHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPD 725 +R R+ + Y + N A+ F P Sbjct: 558 CNREGRRPVEDSIVTVFRAADHKPPAAVAQLAAAYGRIA-----------QNHANPFSPA 606 Query: 726 AYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILA 785 A + +Y P + + ++ ++ + AE++ + D+ + Sbjct: 607 ALEDYFREVY---WSKGPGLDEHKI--LKAFAWDRSGGTLNYKRVAEDFRMIDSGMAPVI 661 Query: 786 VTRD 789 + RD Sbjct: 662 IGRD 665 >UniRef50_Q184G8 Putative uncharacterized protein n=7 Tax=Clostridium difficile RepID=Q184G8_CLOD6 Length = 773 Score = 302 bits (774), Expect = 3e-80, Method: Composition-based stats. Identities = 140/878 (15%), Positives = 278/878 (31%), Gaps = 165/878 (18%) Query: 9 HYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEM----LSKQRVK 64 + KS+ T L H D Q VL+ ++ +N L ++ Sbjct: 1 MLYAKSNPVET-------LREHT-------DELLKQMNVLRESYGKNINSLDFLEEEIFW 46 Query: 65 AWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQ 124 L F I HDIGK FQ + + H + + Sbjct: 47 QLLDFVIEFHDIGKAFSPFQELIKSRMDTKINEPKIVTH----LENNVGHNYLSPAFIDY 102 Query: 125 DSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYA 184 + + + + + + + HH Sbjct: 103 SYIDRKKNKELRAVLN-------------QVIVYHHER---------------------- 127 Query: 185 AQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFC--SLADWLGSWTTTNTFLF 242 D +++ ++++ + + ++ + +L S Sbjct: 128 --DIFIDKDFKNLIQKILDEDLINKVYELQHEFKVRYPIKTEKLSKVYLQSVEKRIDKNH 185 Query: 243 NEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDA 302 + + D A V+E + +++ E + Q A Sbjct: 186 KYYNLYIMLKGILHRLDHSASAHEVVECNNVINIGEQTENYLMKEFGSLREAQS----FA 241 Query: 303 LPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASAS 362 ++ APTG GKTETAL + K D F LP + + NA+ R + Sbjct: 242 KSNRNKNIILIAPTGMGKTETALIWIDK-------DKAFFTLPLRVSINALFDRAKNIVG 294 Query: 363 HLFSSPN-LILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGV 421 S+ L L H + + E QE + K+ ++ Sbjct: 295 VGESNDTFLGLLHSTA----------IDYLEESNQENSSEIVD------LAKLLSCKLTF 338 Query: 422 CTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVIL 481 TIDQ+ + + S +++DE+ AY + +L ++ +GG ++ Sbjct: 339 STIDQIFKFPFLYRGYEKVYSTLAYSKVVIDEIQAYSPEIAAVLVKGIEMIHKIGGRFMI 398 Query: 482 LSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQ 541 ++AT+P +L ++++ E I R + Sbjct: 399 MTATMPTIYIDELKKRGVMNSNLAELTCNTEKI----------------------RHCVS 436 Query: 542 PEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNT---QVDID 598 + + L I + +V +I N V A Y+ ++E+ V+++ Sbjct: 437 IVENSIDENLGK-------IIQSGMNKKVLVIVNTVKSAVEKYELIEEIVKPKGIDVNLN 489 Query: 599 LFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADL 658 L H+ + DR + E + + I + TQ+VE SLD+DFD L T++ D Sbjct: 490 LLHSMYIQEDRAKLEKYIKEF----ADSDSNGIWITTQLVEASLDIDFDELHTENSTLDS 545 Query: 659 LFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNG 718 LFQR GR +R P I G G + ++ + + ++ Sbjct: 546 LFQRFGRCYRSREYEE----NSPNIFIYTEKATGIGS----IYDKDIVEKGLELLKTFIN 597 Query: 719 AS--LFFPDAYR-QWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRF-----KARKVLQW 770 + + Y+ + + +Y ++ + + + A+ +L+ Sbjct: 598 GKECVKMKEKYKVEMVKILYSKESLEGTAFEKRFTSALNILDTITPYSLGSKDAQNILRN 657 Query: 771 AEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYED--------LSHEQQ 822 E Y++ D + E +L G++L++ +D ++ Sbjct: 658 IEGYTVIPED-----IYNKIEETLI---KDYEELGQELINAYSNDDRQLINKIKSKRKKA 709 Query: 823 YEALALNRVNVPFTWKRSFSEVVD------EDGLLWLE 854 + VN+P ++ V+D ED + L Sbjct: 710 RREIIKKTVNLPI--YKAKQNVIDIQVKGLEDLKILLY 745 >UniRef50_Q2J7P4 CRISPR-associated helicase Cas3, core n=1 Tax=Frankia sp. CcI3 RepID=Q2J7P4_FRASC Length = 751 Score = 302 bits (772), Expect = 5e-80, Method: Composition-based stats. Identities = 143/883 (16%), Positives = 249/883 (28%), Gaps = 158/883 (17%) Query: 11 WGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFF 70 W S + H L+ H A +L F + + F Sbjct: 2 WAHS---MNTSGMRHRLVDHLEGTA-----------LLAERFAAVFGAGE------VGRF 41 Query: 71 IAL-HDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSE 129 L HD+GK +Q L +T + +H G+ + Sbjct: 42 AGLAHDVGKASCAWQDGL-------------LRAEATGVRVGEDHKTLGVLLAER----- 83 Query: 130 QSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQ 189 ++ + GHHG + + + S + Sbjct: 84 ----------------RGAFPVLGLPLHGHHGGLTNPSEVR--SMIKDRSKPRDVQDRAE 125 Query: 190 AREEWISVLEALFLTPA-----GLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNE 244 A +L LF P G L AD L + + Sbjct: 126 AEAALRPLLPGLFDGPPVRLPVGFDEPGTSEMLMRFLFSALVDADGLDTAAHRSGGQPQV 185 Query: 245 DAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALP 304 AP+D+ L F R++ + A + + + + A Sbjct: 186 AAPADMAMLWDRFVGRRK--------------EMLAGRPPAPAADRLRGEVYEACLAAAA 231 Query: 305 VAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAM---LTRMEASA 361 G+ + APTGSGKT A + + +Q VI A+P R+ Sbjct: 232 GPTGIYRLPAPTGSGKTIAAAGFGLRHALEQGKSRVIVAVPFITITEQNHAVYRRLLDPV 291 Query: 362 SHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGV 421 +P ++ H N + Q + + + V Sbjct: 292 GAGKGAPVVLEHHSNVTVDDD-------------------GPAQRWRRLAAENWDAPFVV 332 Query: 422 CTIDQVLISVLPVKHRFIRG-LGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQ-ADVGGSV 479 T Q+ S+ K +R + SV+++DEV A + + L+ A G +V Sbjct: 333 TTTVQLFDSLFGRKPAAMRKVHRLANSVIVLDEVQALPAPLLLPIVDGLRTLTARFGTTV 392 Query: 480 ILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFS 539 +L SAT P L + +++++PE L Sbjct: 393 LLASATQPE------------------------LWALDPLESITPIEVISNPESLYKTSC 428 Query: 540 IQPEPICLADMLPDLTMLERMIAAANAGA-QVCLICNLVDVAQVCYQRLKELNNTQVDID 598 + +R+ A AGA Q I N V A+ + + Sbjct: 429 RVRYEWWPDPKPTLEQVADRVADPAAAGADQSLTIVNTVANARQMRDLVAARVPATTPVL 488 Query: 599 LFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADL 658 RRE V + LV+TQ++E +D+DF + PAD Sbjct: 489 HLSTAMCPAHRREVLAEVKERL----TARLPVRLVSTQLIEAGVDLDFPVVFRAMAPADS 544 Query: 659 LFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNG 718 L Q GR +R G + + + P G R + + T ++I G Sbjct: 545 LQQAAGRANREGHL----GPKGGLVVVFDPADGGRPRSYDLP-----VGITARYI----G 591 Query: 719 ASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQD 778 PD + +Y + + P G R V + + Sbjct: 592 LGRADPDDLKAL--RLYYHSYLQNPRVSGRDSRGAAVQISRAALDFRAVAEGPKRTGEDP 649 Query: 779 NDETILAVTRDGEMSLPL-LPYV-QTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFT 836 + A E ++P+ +PY + +QL++ L + + L V + Sbjct: 650 RPDRSKAFRMIDEDTVPVAVPYQGEEERVRQLVERIRMVPLPEPRLFRDLQPYLVMI--- 706 Query: 837 WKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGM 879 + +Y + G+ Sbjct: 707 ---------QRRTRDRADVATLCQPVFGDLVEWAGSYDKNTGI 740 >UniRef50_A5ILM5 CRISPR-associated helicase, Cas3 family n=4 Tax=Thermotogaceae RepID=A5ILM5_THEP1 Length = 763 Score = 302 bits (772), Expect = 6e-80, Method: Composition-based stats. Identities = 145/744 (19%), Positives = 253/744 (34%), Gaps = 117/744 (15%) Query: 60 KQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGL 119 V+ I HD+GK FQ K H + Sbjct: 30 DSGVRELAGKAILYHDLGKVIYAFQKKVGGD-------------VPEDGIPDIPHSFLSI 76 Query: 120 YWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHH----------GFILHSQDQ 169 + +++L E G ++ AV HH G S + Sbjct: 77 AFIPENTLRELGEG--------------LSRIFLSAVLYHHWRETYLDYLFGRKKESVCK 122 Query: 170 DKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSIND----IPPDCSSLLAGFC 225 R + +++ I + + L + SI D PP SLL Sbjct: 123 AYERLLEVGDEIVWLLREEMGDLCEIELNKPLCEYLSHNSIIDSGLVFPPHLISLLPS-I 181 Query: 226 SLADWLGSWTTTNTFLFNEDAPSDINALRTYFQ-----DRQQDASRVLELSGLVSNKRCY 280 L + ++ + +Y + + + A + LE L + +R Sbjct: 182 ILKELNIRDENYKRYIITSGTVMRADRFASYVETAGNKELLKKADKRLERDQLETVRRYL 241 Query: 281 EGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSV 340 E + ++ L V+ APTG+GKTE AL ++ Sbjct: 242 ERIS---------NKVWQLDLLKDCRGENIVLVAPTGAGKTEFALMWS--------KGKT 284 Query: 341 IFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAW 400 +F LP Q+ N M R++ F N+ L H ++ F S ++ E Sbjct: 285 LFTLPLQSATNMMYERVKNY----FGEENVGLLHSDAAVYLFFSSFLKNNFEDREGEVLQ 340 Query: 401 VQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTY 460 + + F + T DQV S L + + S L++DE+ AY Sbjct: 341 IV-------EQSRFFSHPFVISTGDQVFPSALKYPGYEMIYSILANSYLVIDEIQAYSPE 393 Query: 461 MNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVN 520 ++ + +GG ++++ATLP + ++L N Sbjct: 394 AAAIIVKTAEDVKQLGGHFLIMTATLPGFIRDEILK----------------RAELEEKN 437 Query: 521 GAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVA 580 ++ + L ++ L +E+ + G +V ++ N V A Sbjct: 438 IKDVYEDIPQGRLLRNLVKVEK----------SLDPVEKAVEFFKKGCRVLIVRNTVRNA 487 Query: 581 QVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQ 640 Y++L E + D+ L H+R TL DRR E ++ ++ K ILV+TQVVE Sbjct: 488 IETYRQLVEKLGKE-DVLLIHSRMTLEDRRRIE-EILESYRPGAK-GRNIILVSTQVVEA 544 Query: 641 SLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHI- 699 S+D+DFD L+T PAD L QR+GR+ R E P I E + Sbjct: 545 SMDIDFDILLTDIAPADSLVQRMGRIFRKREWTE----EFPNTFIYADSNEKKRKELIAG 600 Query: 700 YSNVRVMWRTQQHIEELNGAS---LFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFES- 755 + V+ T +E + + R+W++ Y ++ + + Sbjct: 601 VYSEDVVSATLNALEGMFDIEKPFKLDELSKRKWVEETYQALS-QGSNYLKKFRETLDVL 659 Query: 756 ---AECEKRFKARKVLQWAEEYSL 776 EK+ +A ++ + S+ Sbjct: 660 DSGYSSEKKHEAHRIFRRVVSMSI 683 >UniRef50_Q2RHQ9 CRISPR-associated helicase Cas3 n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RHQ9_MOOTA Length = 917 Score = 301 bits (771), Expect = 6e-80, Method: Composition-based stats. Identities = 163/983 (16%), Positives = 294/983 (29%), Gaps = 182/983 (18%) Query: 7 ICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAW 66 + +W KS+ L H DV A + L N + L Sbjct: 1 MADFWAKSNGIS--------LSKHTGDVLAATGVLQKK---LGNKVPGDWWLG------- 42 Query: 67 LLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDS 126 L + LHD GK D FQ + + K + H L++ ++ Sbjct: 43 LKYAALLHDSGKVDPAFQERIKKQGQKAGDVPAD-----EPKYKDIPHSILSLFFVRPEN 97 Query: 127 LSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGF--ILHS--QDQDKSRWEMPASLAS 182 + + + A+ HH Q+ + L Sbjct: 98 FT--------------FSQPYLAYAVISAIVFHHWRESFPDYFLGSQEYLIRKKAGELEE 143 Query: 183 YAAQDKQAREEWISVLEALFLTPA-GLSINDIPPDCSSLL-------AGFCSLADWL--- 231 AA + + ++ L L ++ + + L AG L Sbjct: 144 RAALWNRLSRDLVAELTILAEKYELDPAVMGLNTTLTEYLRYNTLGSAGLLIPPYTLVYL 203 Query: 232 -----GSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLE----LSGLVSNKRCYEG 282 + + +F ++++ L+ SG V E Sbjct: 204 PEQIRAKAARGDEKDRARVFIAGNLMRADHFASMVEESNTGLQIDAIESGRVFTTGEIER 263 Query: 283 VHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIF 342 N Q Q + V+ APTG GKTE A + Sbjct: 264 TLKEKFNTPDYWQKQFFQNHKEAKGDNLVLVAPTGFGKTEFAFLW-------GAEKKNFI 316 Query: 343 ALPTQATANAMLTRMEASASHLF--SSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAW 400 LP +A N + R L + L H ++ + + + + Sbjct: 317 LLPMRAAVNKIWERTRDMVESLGEKGDDQVALLHSDAALETFSRYQQQGDLESES----- 371 Query: 401 VQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTY 460 + + + T DQV + L + L++DEV AYD Sbjct: 372 ---NTRKAMELARHLARTYIIATADQVAPAALRYPGYERIFAALMNGALVIDEVQAYDPR 428 Query: 461 MNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVN 520 ++ +++ A +GG+ ++++ATLP ++L+ GL V P + Sbjct: 429 AAAIITHLVQQNAYLGGNNLIMTATLPPFISRELVKRLGLADHQVIRLIDEPEFEGVAAS 488 Query: 521 GAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVA 580 R H + + +I AA G +V ++ N V A Sbjct: 489 CRHRLGFNVHAG-------------------DYASAVTAIIRAAQQGKKVLVVMNTVRAA 529 Query: 581 QVCYQRLKELNNTQ---VDIDLFHARFTLNDRREKENRVISNFGKN--GKRNVGRILVAT 635 Y ++ + + ++ L H+RF L + E E V+ + N + I+VAT Sbjct: 530 CEIYDKIMAVLQQEQLAIETLLLHSRFILKQKEELEKAVVEKYMPNRPDRDAGPCIVVAT 589 Query: 636 QVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYG- 694 Q+VE SLD+D D L T+ PAD L QR+GR+ R + I++ +G Sbjct: 590 QIVEASLDIDADVLFTEPSPADSLIQRMGRVFRRFARLTGNNAPPEANVIIIINGGDQPL 649 Query: 695 --------------------RHEHIYSNVRVMWRTQQHIEELNGASLFFP---------- 724 + +Y+ + L G + P Sbjct: 650 NRRRRSDQEEKTAGDVQLASGLKTVYNRDLTALSLVILLMALKGEAGLSPGSSLAEELKR 709 Query: 725 -----------------DAYRQWLD----------SIYDDAEMDEPEWVGNGMDKFESAE 757 + R+ ++ + + +MD E +D+ + Sbjct: 710 KPWVDCFKKSKGKGNSGNTNRRLVEVIKSITGQTLLLTEKEKMDWVELTYGILDELRRID 769 Query: 758 ------CEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQ---- 807 + K + L + D + RD ++ +P + Sbjct: 770 NYPLQLEDYIQKYEETLAILDHGYCSDRKRDAERLFRDI-NAITGVPIEKAGEFYDSIRT 828 Query: 808 LLDGQVYEDLS-HEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNL------- 859 L G+ L+ E L VN PF + V D D L + ++ Sbjct: 829 WLSGKNAGSLNFLELALAILPRFTVNCPFLATSNGERVRDLDFEAMLPPELDIKSITKIR 888 Query: 860 ---DGWVWQGNSIVITYTGDEGM 879 + W+ + + Y +G+ Sbjct: 889 SRLERWLKGIYILDLPYDQVKGL 911 >UniRef50_UPI0000F51713 CRISPR-associated helicase Cas3 n=1 Tax=Ferroplasma acidarmanus fer1 RepID=UPI0000F51713 Length = 803 Score = 301 bits (770), Expect = 8e-80, Method: Composition-based stats. Identities = 132/901 (14%), Positives = 272/901 (30%), Gaps = 158/901 (17%) Query: 26 LLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQY 85 LL H ++V ++ + + + + LHD GK+ FQ Sbjct: 18 LLKTHLIEVGENVYNSLNE---------LKFNGNVELLLKSSIIISCLHDFGKYTSFFQN 68 Query: 86 KSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHP 145 + + S H + + P Sbjct: 69 YLMSDKDSKSKSDGYSKYKS--------HAFISALYAAYCA-------------SKNNLP 107 Query: 146 YESWFPWVEAVTGHHGFILHSQD------QDKSRWEMPASLASYAAQDKQA-REEWISVL 198 E F ++ HHG + + QD R ++ + Q + E + Sbjct: 108 NEYIFYVYLSIKHHHGNLCNLDSDIGTSTQDFLRPKISEDIKIAKKQLEDLKHEPIKKDM 167 Query: 199 EALF----------LTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPS 248 E +F D+ + L+ + + T N Sbjct: 168 EDIFTFGSNHGVLLNFIDDFFKEDLTNIFNMLVK---INKNRCLNNTNMNIDFSEFLLLY 224 Query: 249 DINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVH-ALLDNGYQPRQLQVL---VDALP 304 + ++S + +K + + N + + + V + Sbjct: 225 SLLIDNDKRNAASIKNYDRKDISPDIIDKYKNQNLSGKTEINKIRNNFYESVKKNVQNID 284 Query: 305 VAPGLTVIEAPTGSGKTETALAYAWKLIDQQIAD-----SVIFALPTQATANAMLTRMEA 359 + I +PTG+GKT + L A+ + ++ + +I+ LP + Sbjct: 285 LNDHFFTITSPTGTGKTISGLYTAFSIRNKLFKNTGNIFRIIYTLPFTTIVDQNYDTGRN 344 Query: 360 SAS-----HLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKV 414 +I H S + + EE L++ Sbjct: 345 ILETCSGFKNNDERYIIKHHHLSILS-----------GKIDDEELSADEVLMLTED---- 389 Query: 415 FLGQIGVCTIDQVLISVLPVKHRFIRG-LGIGRSVLIVDEVHAYDTYMNGLLEAVLK-AQ 472 + +I T Q+ ++ K++ ++ I S++I+DE+ A D + ++ Sbjct: 390 WDSEIIFTTFVQLFSALAGYKNKNLKKYYRIINSIVILDEIQAIDIAKWPQIRYLMNYYA 449 Query: 473 ADVGGSVILLSATLPMKQ--KQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAH 530 IL+SATLP +L Y + + + + I R + H Sbjct: 450 KKFNIYFILMSATLPELVNNSIELGGDYQKRFEELNRVNMHINILERLTPKEIVKKYMYH 509 Query: 531 PEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKEL 590 E + N ++ + + LKE Sbjct: 510 SETAK-----------------------------------LFVFNTINTSIEAFNYLKEN 534 Query: 591 NNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLI 650 + V+ + K+ VI N K+ K N I+VATQ+ E +D+ FD +I Sbjct: 535 VSNDVNTYYLSSNIVPI----KKKDVIDNINKDIKNNKKIIVVATQIFEAGVDISFDMVI 590 Query: 651 TQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRH--EHIYSNVRVMWR 708 P D L Q GR++R+ R + + P+ GY + +Y + Sbjct: 591 RDIAPIDSLIQSSGRVNRNSFNTRGNMYIVNCV----PEKNGYDGYYCRQVYGKIH---- 642 Query: 709 TQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDE---PEWVGNGMDKFESAECEKRFKAR 765 T I+ L+ + Y + + Y++ + E + N ++K + K R Sbjct: 643 TDTTIKILSDRKIVEEKDYLKLIKHYYNEINQNLIGSSENLQNALNKLDFNS-----KNR 697 Query: 766 KVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEA 825 + +S+ D+ + ++ + S+ +++D + Sbjct: 698 DEHYYVSNFSMIDDMDKYIS-----------IFVELDSNAMRIIDTYINRKSYE------ 740 Query: 826 LALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMTRVIPA 885 + + + ED K D ++ + N + +Y+ D G+ + Sbjct: 741 -RADIIQLKREMYNYIISARIEDIKNITCEKLYSDFYIIRNNYLENSYSNDTGLKKASDG 799 Query: 886 N 886 + Sbjct: 800 S 800 >UniRef50_D1JP52 Metal dependent phosphohydrolase n=2 Tax=Bacteroides RepID=D1JP52_9BACE Length = 719 Score = 301 bits (770), Expect = 9e-80, Method: Composition-based stats. Identities = 145/826 (17%), Positives = 270/826 (32%), Gaps = 144/826 (17%) Query: 12 GKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFI 71 KS + L H VA T R + + V+ Sbjct: 10 AKSESNGATS-----LKSHLESVA-----------FWAQTAARYAGMDENVVR----IGA 49 Query: 72 ALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQS 131 LHDIGK FQ + + F H A L++ Sbjct: 50 LLHDIGKASPFFQIRLQVKKKP--------------NEKVFRHEVASLFFLKLI------ 89 Query: 132 LGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAR 191 W ++ + HH S +D+S + Y + Sbjct: 90 -------------DRSLWPEVIDMIIAHH----KSVYKDRSCNGLLDLKEYYGEE--NTF 130 Query: 192 EEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTT-NTFLFNEDAPSDI 250 + +S + + G+ P AD L S + + + Sbjct: 131 RDHVSGFSSWSIDAIGILRELNFPG---------VSADSLLSEEDALEAYRYAIEHCRRK 181 Query: 251 NALRTYFQDRQQDASRVLELSGLVSN--KRCYEGVHALLDNGYQP-RQLQVLVDALPVAP 307 + ++ + + + N P L ++ Sbjct: 182 PKGWSKWKGLLMGVDHLASATEEFKERIPTLFSIPDVGFYNRQHPLYPLSQVLSEA--NK 239 Query: 308 GLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSS 367 T ++APTG+GKT + ++ + + LP QA+ NAM R+ + + Sbjct: 240 KHTFVKAPTGAGKT--------DFLLKRCQGRIFYTLPFQASINAMYERIRRDLNGV--V 289 Query: 368 PNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQV 427 ++ L H SR + W + + I V T Q+ Sbjct: 290 EDVRLLHSMSRLVIEGEK-------------------AWEEKVIQDKIGASIKVLTPHQL 330 Query: 428 LISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLP 487 L K + +I+DE+H Y M ++ +++ +G + + +AT+P Sbjct: 331 ASVSLGTKGYETLLFDLCGCDIILDEIHTYSDIMQSIILTMIEVLVHIGCRIHVGTATMP 390 Query: 488 MKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICL 547 + +QK+LD G + Q+ +LL+ R+ + Sbjct: 391 SELEQKILDILGR-------------------DQTQQVELLSSVLDSFNRYIVHKVT--- 428 Query: 548 ADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLN 607 ++L + A ++ ++CN V AQ+ ++++ EL +VD L H+RF Sbjct: 429 ----DFYSVLPVLREAIENDQKILIVCNRVRNAQILFEKIDELYP-EVDKMLIHSRFKRK 483 Query: 608 DRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLH 667 DR E + + K + I+V+TQVVE SLD+ FD +IT+ P D L QR GR++ Sbjct: 484 DRNRLEKELQDIYNKVLQA---CIVVSTQVVEVSLDISFDMMITETAPIDALIQRFGRIN 540 Query: 668 RHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAY 727 R RK + + I PD + + + + ++ R+ + + SL + Sbjct: 541 RK-RKPKEERTLKHIYVIAPPDK----KEDCLPYSQEILQRSYDALPQ---DSLLEESSL 592 Query: 728 RQWLDSIYDDAEMDEPEWVGNGMD-KFESAECEK--RFKARKVLQWAEEYSLQDNDETIL 784 ++ +D +Y + + D K+ E + + L + D Sbjct: 593 QRLIDQVYPQVNVIDLSLDAAFADGKWRLKELFHLPKSAFIEKLDIDSVSCITQEDADTG 652 Query: 785 AVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNR 830 L+ S + + + + SH +A + Sbjct: 653 KYREATAEERVLMEIPMRYSSLRWKNLETFPYGSHPFVIPDIAYSS 698 >UniRef50_O57915 Putative uncharacterized protein PH0176 n=1 Tax=Pyrococcus horikoshii RepID=O57915_PYRHO Length = 690 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 173/859 (20%), Positives = 307/859 (35%), Gaps = 199/859 (23%) Query: 27 LIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYK 86 L H L+ +A+ ++ + +L + LHD+GK D RFQ K Sbjct: 21 LYEHSLNAKRIAERILERINY------------PSEARDCILMHVFLHDVGKLDDRFQEK 68 Query: 87 SAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPY 146 + R H G+ ++ E + Sbjct: 69 LR------------------KGGRAPPHAFLGVELASRFLNCESPFREIALLS------- 103 Query: 147 ESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPA 206 + HH + QD+ + +L + + + +F + Sbjct: 104 ---------ILTHHSDFHEALYQDEI--DRDEALIIDGKVVSSPADLVYELRDEIFYKLS 152 Query: 207 GLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASR 266 + + SL G L+DWL S AS Sbjct: 153 QSKNAVMLRNLYSLFNGVLRLSDWLES------------------------------ASL 182 Query: 267 VLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALA 326 + + + L G++PR Q + + G ++ PTG GKTET+L Sbjct: 183 DVGSYYTSGSFVRDRVIGYLSSKGWKPRDYQGFI--MGKGSGYFLL--PTGDGKTETSLL 238 Query: 327 YAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSI 386 + VI+ LPT T AM R E +F N+ HG ++ + Sbjct: 239 AI------ADSPKVIYTLPTITTVEAMRKRFEE----MFGKDNVSFGHGMLFYSLYKEGK 288 Query: 387 KSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGR 446 S + + + I V TIDQVL++ + +R L + Sbjct: 289 LSE-------------------RLINRYAMKGIHVSTIDQVLLAFINYFKFPLRELSLRG 329 Query: 447 SVLIVDEVHAYDTYMNGLLEAVLKAQADV-GGSVILLSATLPMKQKQKLLDTYGLHTDPV 505 S LIVDE+H+Y Y L+ L+ + G V++ SAT+P ++KL + P Sbjct: 330 SHLIVDEIHSYTPYTLSLILEGLRYAVNYLGSKVVVTSATMPSLLREKLEEVGLKELIPF 389 Query: 506 ENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAAN 565 E + + R + + + + + + Sbjct: 390 EK--------------------VKRRYESKRRVRVWFRDLPMFEDIDSI---------IR 420 Query: 566 AGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGK 625 +V +I N V A+ Y+ LK+ + D+ LFH+RFT+ D+ EK V Sbjct: 421 EKGKVLVITNTVTRAREIYEELKKR---RDDVYLFHSRFTVRDKEEKMRLVNEI------ 471 Query: 626 RNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATI 685 ILVATQVVE SLD+D+D L T+ P D L QR GR++R + A + Sbjct: 472 --SSGILVATQVVEVSLDIDYDTLYTEVAPIDSLIQRFGRVNRRG-------MKEGRAYV 522 Query: 686 LLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEW 745 +G+ + ++ + R + + ++EL A + + DS Y++ + Sbjct: 523 YAVEGKRF----YLPYSKRSVEASLSMVKELEEAK--NELDFLRLNDSFYEEIWDEYE-- 574 Query: 746 VGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSG 805 +E +K++ R+ L+ + + TRD MSLP +P ++ Sbjct: 575 ----------SELKKKYLERQALRTIHRFR-----KESWLSTRDTFMSLPAIPLKFWNNV 619 Query: 806 KQLLDGQVYEDLSHEQQYE---ALALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGW 862 +L + ++DL +++ E + + +NVP + ++ ++ + L G +D Sbjct: 620 VEL--AERWDDLGEKEKAEGMFKVIGSVINVPIWILK--DNLLYDEKVYKLFGVYGID-- 673 Query: 863 VWQGNSIVITYTGDEGMTR 881 + Y + G+ Sbjct: 674 --------LEYDSEVGLIE 684 >UniRef50_B3QT88 Metal dependent phosphohydrolase n=3 Tax=Bacteria RepID=B3QT88_CHLT3 Length = 723 Score = 300 bits (767), Expect = 2e-79, Method: Composition-based stats. Identities = 132/790 (16%), Positives = 254/790 (32%), Gaps = 144/790 (18%) Query: 17 SLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDI 76 + L H L V VA+ ++ Q K LHDI Sbjct: 9 KAKGKPEETTLHEHLLLVCNVAE-----------KIAIYSNMNPQIAK----LGAILHDI 53 Query: 77 GKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFF 136 GK FQ + + P F H A ++ + Sbjct: 54 GKTSTIFQERLTINKKPDTP---------------FRHEIASCFFLSL------------ 86 Query: 137 SFFDAAPHPYESWFPWVEAVTGHHGFILHS---QDQDKSRWEMPASLASYAAQDKQAREE 193 E +E + HH I + + + + ++ + + + Sbjct: 87 -------FDKEIHPALIEMIIAHHKSIENDAKRKGILDLNEDRDNTFLLHSKNWELWKSD 139 Query: 194 WISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINAL 253 + +L A +T +SI + S+ + + S + Sbjct: 140 ALQLLSAFGITVRDISIEEAQ-----------------ASYDAVVAYCEDAVRESGYSEW 182 Query: 254 RTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIE 313 R AS + + + + ++ L + T++ Sbjct: 183 RGLLMAADHFASALSGKTDDYLVRLFKQPKLDFYQRRHELYPL--SLKNASSEKKHTMVV 240 Query: 314 APTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILA 373 A TG+GKT + ++ V + LP QA+ NAM R++ + ++ L Sbjct: 241 ASTGAGKT--------DFLFRRCKGRVFYTLPFQASINAMYKRVKKDLATDNPDMDIRLL 292 Query: 374 HGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLP 433 H S+ +S + + I + V T Q+ Sbjct: 293 HAASKIALDGKSKEEKIIQGHVG--------------------AAVKVLTPHQIAAIAFG 332 Query: 434 VKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQK 493 + I +I+DE+H Y ++ +++ +G ++ + +AT+P + Sbjct: 333 TNGYEAMIMDIKGCDVILDEIHTYTEVTRAIVLKIIQVLKHLGCNIHIGTATMPTLLYNR 392 Query: 494 LLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPD 553 ++D G T L + R I + Sbjct: 393 IIDLLGKETV-------------------SEIRLEDDELEQFNRHIIHK-------IDNR 426 Query: 554 LTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKE 613 + E + A N +V ++CN V AQ Y +L+E+ + I L H+RFT DR EKE Sbjct: 427 ESAAEIITQAINEQKKVLVVCNRVKAAQDEYSKLQEMFP-ETPILLIHSRFTKGDRDEKE 485 Query: 614 NRVISNFGKNGKRN------VGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLH 667 ++ I+V+TQVVE SLD+ FD ++T P D L QR GR++ Sbjct: 486 RLLLGLDDDGNPNGNFNTSNKACIVVSTQVVEVSLDISFDVMVTDAAPLDALIQRFGRVN 545 Query: 668 RHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAY 727 R R G PV + P+ + + ++ V+ R+ + + + Sbjct: 546 R-IRTKETIGTYKPVYVLPPPENKKEAK----PYDLEVINRSYDVLPN---GEVLEEKSL 597 Query: 728 RQWLDSIYDDAEMDEPEWVGNGMD----KFESAECEKRFKARKVLQWAEEYSLQDNDETI 783 ++ +D ++ + + E + + + + ++L + + D+ Sbjct: 598 QEKIDHVFTEIDFLAIEEHSVFKETGKWRIDKLTHNSKAMLLELLDIDSVSCILEADKET 657 Query: 784 LAVTRDGEMS 793 + E Sbjct: 658 YMLANYEERY 667 >UniRef50_A4XGC8 CRISPR-associated helicase Cas3 n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XGC8_CALS8 Length = 908 Score = 299 bits (766), Expect = 2e-79, Method: Composition-based stats. Identities = 147/851 (17%), Positives = 265/851 (31%), Gaps = 127/851 (14%) Query: 7 ICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAW 66 + W KS + L H DV + F + + Q + Sbjct: 1 MSEIWAKSVNEKNNNKRV-TLSNHVSDV------------LKVFEFFKKKFSDNQFILNA 47 Query: 67 LLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDS 126 I HD+GK FQ K A ++ + + H ++W N D Sbjct: 48 AEIAIFFHDLGKVLPSFQIK----------ALGNIGYYPRDVVYEIPHSLFSVFWINIDK 97 Query: 127 LSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHH--GFILHSQDQDKSRWEMPASLASYA 184 L E+ + E + A+ HH + + + Y Sbjct: 98 LKEKLNSE------------EYLNYIISAIAYHHWKDNFDEIISLENKQLKQVCEKVIYE 145 Query: 185 AQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNE 244 +D+ +E + + D+ L+ L + F+ Sbjct: 146 WKDEL-KENLDKEFGKISSYDEYKELIDVNITWLKA-----ILSHRLFVNLAVPPYKFDY 199 Query: 245 DAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPR---------- 294 ++ + R + + E + + + + Sbjct: 200 HPLRG--EVKKEWIFISGVLQRCDHFASWCEEEGIEEELGNVEIDAPEKENVTKIISRSI 257 Query: 295 --QLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANA 352 + + + T++ APTG GKTE A + + + + LP +A+ N Sbjct: 258 GDKAWQFKELEKCSEKNTILIAPTGYGKTEFAFLW-------SSGEKLFYTLPLRASVNN 310 Query: 353 MLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNK 412 R A + F L H ++ L +++ + Sbjct: 311 TFER----AKNAFGCNKTGLLHSDADVYLL--------------DKSSDETGSIKLCELA 352 Query: 413 KVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQ 472 K + V T DQ L + + S + +DE+ AY ++ L+ Sbjct: 353 KQLSYPVIVSTGDQFFPYALRPPGFERIFVSLSYSRIAIDEIQAYSPKACAIIVKFLEWV 412 Query: 473 ADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPE 532 +GG +L++AT+P L D V + Y + L E Sbjct: 413 YKMGGKFLLMTATMPKFVIDYLKDVIPDFCKKVNFVNIYEKEKDAFSKLYKHKIRLNLIE 472 Query: 533 QLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNN 592 +F I ++ ++ A +V +I N V AQ Y +LK + Sbjct: 473 TKDKQFDI------------PDEIIREVLQKAKDNKRVLVILNTVGFAQSVYDKLKNSAD 520 Query: 593 TQV--DIDLFHARFTLNDRREKE-NRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWL 649 Q+ I L H+R+TL DR KE + + + F +VG+ILVATQVVE SLD+D D L Sbjct: 521 EQLKERIFLIHSRYTLKDRENKEFDYINNKFKNPKTEDVGKILVATQVVEASLDIDADIL 580 Query: 650 ITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHE------------ 697 T+ CP D L QR+GR+ R + D + Sbjct: 581 YTEMCPLDCLVQRMGRVLRRYFYKDGEVINKGNNNKFNLDKPFKAFEKEHSEVNVNVFIF 640 Query: 698 ---------HIYSNVRVMWRTQQHIEELNGASLFFPDAYRQW---------LDSIYDDAE 739 H + ++ + + +L + + + ++ ++ D Sbjct: 641 NNNNLQSGGHRVYSRELIILSLAWLWKLKNTQNSLEELFNKITKQKFNNNEIEKLFTDEF 700 Query: 740 MDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPY 799 D + K + ++ E + K L ++ + I D + + L Sbjct: 701 TDLISNRQSSGKKSKKSKDENKESVYKYLLSNSDWLKTLDKMEIELSEYDKYILVTLFYS 760 Query: 800 VQTSSGKQLLD 810 G L D Sbjct: 761 SLKEDGDYLKD 771 >UniRef50_C6PBT9 CRISPR-associated helicase Cas3 n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PBT9_CLOTS Length = 788 Score = 299 bits (765), Expect = 3e-79, Method: Composition-based stats. Identities = 129/888 (14%), Positives = 277/888 (31%), Gaps = 152/888 (17%) Query: 25 HL---LIYHCLDVAAVADCWWDQSVVLQNTFCRNEM---LSKQRVKAWLLFFIALHDIGK 78 H L H A L F L + + HD+GK Sbjct: 13 HPNKYLEDHLSGSA-----------HLIEKFSDESSTNLLDDKLISRLTKVIALCHDLGK 61 Query: 79 FDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSF 138 FQ + + + ++ +H E + Sbjct: 62 STRYFQDYL---------SADDSEKKNMKSMKETHHSLISAVIAFFVIKEEINK------ 106 Query: 139 FDAAPHPYESWFPWVE--AVTGHHGFI----------LHSQDQDKSRWEMPASLASYAAQ 186 AA + ++ P++ + HHG + D KS+ + Sbjct: 107 -HAAYNDVKTLLPFIAYIVIKKHHGNLNDVVTEASLDDSDIDTMKSQLQSIDEEKFSILS 165 Query: 187 DKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDA 246 D + L+ + +I + + + +D S+ ++F+ Sbjct: 166 DNLVKAGLDVKLDKNTINHYIENIKNELRNVKRYIRRINEKSD--LSYYILINYIFSLLI 223 Query: 247 PSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLV---DAL 303 SD + + ++ SR + + + R+ + Sbjct: 224 DSDKSEV-----VIGRNFSRSYVELPSDLVDKYKSQMSYKENKINSLREDAYREVNSSEI 278 Query: 304 PVAPGLTVIEAPTGSGKTETALAYAWKLIDQ-----QIADSVIFALPTQATANAMLTRME 358 + I PTG GKT ++++A +L ++ +I++LP + E Sbjct: 279 NFDDRILSINLPTGLGKTLASISFALRLREKLYKTFNKNYRIIYSLPFLSIIEQNFQEFE 338 Query: 359 ASAS--HLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFL 416 ++ +S N++L H + ++E + + S+ + + Sbjct: 339 KILKGNNINTSTNVLLKHHH--------------LSEMKYTDDDTEFDTDSSKIMIEGWN 384 Query: 417 GQIGVCTIDQVLISVLPVKHRFIRGLG-IGRSVLIVDEVHAYDTYMNGLLEAVLKAQA-D 474 +I V T Q+ ++L K++ +R I S++I+DE+ + Y L++ +L+A A Sbjct: 385 SEIIVTTFIQLFHTLLSNKNKSLRKFHRIANSIIILDEIQSIPFYYWKLVKEILQAVAFK 444 Query: 475 VGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQL 534 + VI ++AT PM G L + Sbjct: 445 LNSYVIFVTATQPMIF------------------------------GNDEIRQLTDKRKY 474 Query: 535 PPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQ 594 + L + +++ G I N + A+ Y+ LK+ + Sbjct: 475 FNQMDRVVIKPVLDRNIHLSELVDMF--DLKDGRSYLFILNTIASAKQFYELLKQKLPDE 532 Query: 595 VDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHC 654 +I +R E+ + K + V TQ+VE +D+DFD ++ Sbjct: 533 -EIVYMSTHIVPFERLERIELI--------KSKKVKYAVTTQLVEAGVDIDFDVVVRDIA 583 Query: 655 PADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIE 714 P D + Q GR +R+ +K V + L D IY + ++ T++ + Sbjct: 584 PLDSINQSAGRCNRNWQKS------GEVYVVSLIDENDKKYSSRIY-DKVMINITEKILS 636 Query: 715 ELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEY 774 + + + +D Y + + +A + ++ + ++ Sbjct: 637 QYDEIG---EKDFLNIIDRYYTAISENLSS---DAAINILNAVYKLKYDSDDGTPSISKF 690 Query: 775 SLQDN-DETILAVTRDGEMSLPLL-PYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVN 832 L D+ + A + ++ L Y++ + K L + + + ++ Sbjct: 691 KLIDDGYYKVDAYIEYNDEAIELWQRYLELKNVKNLFKRRNIFN----EFKADFYKYVIS 746 Query: 833 VPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMT 880 +P + ++V +SI Y + G Sbjct: 747 IPEKTENMPADVEG--------------FKYVNSDSINEYYDKETGFI 780 >UniRef50_B5YBH9 CRISPR-associated helicase Cas3 n=1 Tax=Dictyoglomus thermophilum H-6-12 RepID=B5YBH9_DICT6 Length = 801 Score = 299 bits (765), Expect = 4e-79, Method: Composition-based stats. Identities = 149/873 (17%), Positives = 281/873 (32%), Gaps = 123/873 (14%) Query: 39 DCWWDQSVVLQNTFCRN-------EMLSKQRVKAWLLFFIALHDIGKFDIRFQYKSAESW 91 + ++S++L+N +K + HD GK+ FQ + E Sbjct: 14 EVDLERSILLKNHLREVGLKTIEYFFFEGGDLKNIGYYIGITHDFGKYTTYFQKRLFEIE 73 Query: 92 LKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFP 151 + A Y ++ +++ D E Sbjct: 74 HCGDLANHGFIS-----------SLYSAYLISRKLEEFKNVEDI----------KEFLPL 112 Query: 152 WVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAR---EEWISVLEALFLTPAGL 208 V HH L S + KS E Q + + E L+ L L Sbjct: 113 VAFFVVYHHHLDLSSLSKLKSNLESSDKKELILKQIEDMKSNSEIINRDLKELELPLLEE 172 Query: 209 SINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVL 268 D+ + L + L +F S + + +D R Sbjct: 173 FERDLDDVINLLRKRIYQFENKLEEKIKEKIAIFCLVLFSALIDADKKSAGKVRDVERRD 232 Query: 269 ELSGLVS-NKRCYEGVHALLDNGYQPRQLQVLVDAL----PVAPGLTVIEAPTGSGKTET 323 +V KR ++ N + Q +++ L + +PTGSGKT T Sbjct: 233 IPEDIVEVYKRETFKDNSDEINLLREEIFQKVINKLKEIDISKNKIFTFTSPTGSGKTLT 292 Query: 324 ALAYAWKLIDQ-----QIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSR 378 A+A KL + +I++LP + N + S L GNS Sbjct: 293 GFAFAVKLRKRIEKEFGYTPRIIYSLPFISIINQNYDVLRNVLSKLPDFE------GNSS 346 Query: 379 FNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRF 438 + S+ E+G E V L +S + ++ V T Q+L +++ K+ F Sbjct: 347 AYIISHHHLSKVEYEEGDELREVDESLALIES----WESEVIVTTFVQLLHTIIGFKNSF 402 Query: 439 IRG-LGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADV-GGSVILLSATLPMKQKQKLLD 496 ++ I RS++I+DEV L E + K + +IL++AT P+ Sbjct: 403 LKKYHNIARSIIILDEVQNIPAEYWKLTERIFKLMSQYLNCYIILMTATKPLIFSD---- 458 Query: 497 TYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTM 556 G + ++NN Y + + + + ++ Sbjct: 459 --GDTLEILDNNEVY-----------------------FEKLNRVVLYSNVKEQKGLDSL 493 Query: 557 LERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNN-TQVDIDLFHARFTLNDRREKENR 615 L I + ++ N + + Y+ LKE + + I A +R ++ +R Sbjct: 494 LSWFIDIYDPQKSYMIVLNTIKSSIEFYRMLKEQLSLKEKSIYYLSANIIPKERLDRIHR 553 Query: 616 VISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRP 675 + + G N K ILV+TQVVE +D+DFD +I P D + Q GR +R+ +K Sbjct: 554 IKQDLGNNKKP----ILVSTQVVEAGVDLDFDVVIRDLGPLDSVVQVAGRCNRNFKKENG 609 Query: 676 AGFEIPVATILLPDGEGYGRHEHIYSN--VRVMWRTQQHIEELNGASLFFPDAYRQWLDS 733 + L D +G +Y R+ + +E + + ++ + Sbjct: 610 E-----IFVFFLKDDKGRSYANMVYQKLTPRITFELFSELESVKESEFI--KIINKYFER 662 Query: 734 IYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEE----YSLQDNDETILAVTRD 789 + + +E E + + ++ E ++ E+ + DE + Sbjct: 663 LRFEKSQEESELIISALNNLRFYEGKEIISVSSFELIKEKGIVYPVFIEVDEKAM----- 717 Query: 790 GEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDG 849 + +D + + L LN + + V Sbjct: 718 --------------ETWSKFKSIISDDSIDRWEKKKLLLN---IKSQLEEYIVNVRVNKN 760 Query: 850 LLWL-EGKQNLDGWVWQGNSIVITYTGDEGMTR 881 W+ + + + I Y + G + Sbjct: 761 EPWIFDIAFDQNIGYVANKDIPEYYDSETGFKK 793 >UniRef50_C4IBN7 Crispr-associated helicase Cas3 n=1 Tax=Clostridium butyricum E4 str. BoNT E BL5262 RepID=C4IBN7_CLOBU Length = 871 Score = 298 bits (762), Expect = 7e-79, Method: Composition-based stats. Identities = 126/867 (14%), Positives = 270/867 (31%), Gaps = 107/867 (12%) Query: 50 NTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMC 109 N F ++ + L+ I HDIGK + FQ ++ L T S G Sbjct: 71 NYFKDMSQTGRKMFRRLLVNTIGFHDIGKINPNFQNTKMDNMLGKYAETFSGIGSE---- 126 Query: 110 RKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQ 169 H + + E S D A++ HH + + + Sbjct: 127 ----HSLLSSVLYIDYFIEEIL---SLSNEDGRLILMSIMMFNAYAISRHHSDLDNFNEF 179 Query: 170 DKSRWEMPASLA-----SYAAQDKQAREEWISV----------LEALFLTPAGLSINDIP 214 E ++ + R+ ++ ++ + A + Sbjct: 180 LSKFNEGEKAIEIINTFKENDMNNIYRKNFVLSENRIVKVCGYIKKKYFNEADDEKSIYL 239 Query: 215 PDCSSLLAGFCSLADWLG-SWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGL 273 L+ D+ S T + + S+I+ ++D D + + Sbjct: 240 YTYERLIYSLLVCCDFYATSEFMNKTIISDFGEISNIDEFYKIYKDT--DVYKSIREYED 297 Query: 274 VSNKRCYEGVHALLDNGYQPRQLQVLVDALPV--APGLTVIEAPTGSGKTETALAYAWKL 331 ++ + + N + L + +EAPTGSGK+ TA ++KL Sbjct: 298 TKYEKSKDLSYEKNINVLRTEMFLDAERELLKNIDENIYFLEAPTGSGKSNTAFNLSFKL 357 Query: 332 IDQ-QIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRA 390 ++ + + + P L + + + ++ + I + Sbjct: 358 FEEDKNLKKIYYVYPFNTLVEQNLNILNKTFGNNKAAMDKIAVINSIYPIKEDNKYVEYD 417 Query: 391 ITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLP-VKHRFIRGLGIGRSVL 449 + G E+ + + N++ + + T + ++ K + SV+ Sbjct: 418 SGKNGDEKDFSYKYYEKALLNRQFLNYPVILTTHVSLFNTMFGENKEDAFAFHQLANSVI 477 Query: 450 IVDEVHAYDTYMNGLLEAVLKAQAD-VGGSVILLSATLPMKQKQKLLDTYGLHTDPVENN 508 ++DE+ +Y + + + LK A + VI++SATLP L +++ Sbjct: 478 VLDEIQSYKNTIWTEIISFLKGFAKILNIKVIIMSATLPD--LNMLAVNTNSVCSLIKDR 535 Query: 509 SAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGA 568 Y Q R + + I + L D + E ++ ++ Sbjct: 536 EKYFSN-----------------PQFKDRVIVNYDLIDSGNPLQD--LYEHVLKNSSRNK 576 Query: 569 QVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNV 628 ++ + A ++ L E ++D + T +D + +R+I N Sbjct: 577 KILIEFIKKQSAYEFFKMLNE---EELDATVL--LMTGDDNSIERDRIIKELSSNESEEN 631 Query: 629 GRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLP 688 G ILVATQV+E +D+D D D Q +GR++R RK F Sbjct: 632 GVILVATQVIEAGVDIDMDIGYKDISKLDSDEQFMGRINRSCRKNGEVYFF--------- 682 Query: 689 DGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGN 748 + + IY + + + +++ + + ++ + E + Sbjct: 683 ---NLDKTDKIYKDDFRVNKDFSLLDDKM-REILKNKKFSEYYKMV--------LEMIKK 730 Query: 749 GMDKFESAECEKRFKAR----KVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYV-QTS 803 + K FK + ++ L + D ++ + Sbjct: 731 SNNLLNDDNIHKFFKENVWMLNFKEVSQRMKLIE----------DNNWNMSVYLARNIDE 780 Query: 804 SGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFS-----------EVVDEDGLLW 852 L +V+ + + + V + RS ++ D + Sbjct: 781 DNIHLNGIEVWNEYKKLLHDSKMNYSEKQVKLSNIRSKMSYFIYEIKKNFDLPYNDKIGE 840 Query: 853 LEGKQNLDGWVWQGNSIVITYTGDEGM 879 L +N + + G + + GM Sbjct: 841 LYYIENGEKYFENGKLDKERFNNEVGM 867 >UniRef50_D1A6P6 Metal dependent phosphohydrolase n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1A6P6_THECD Length = 1027 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 153/900 (17%), Positives = 272/900 (30%), Gaps = 150/900 (16%) Query: 6 YICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKA 65 + +GKS + G LLI H + V + A ++ R ++ + A Sbjct: 236 ELAGVFGKSKAASKLGRPE-LLIEHSVTVRSAAQAVAERIGSPGILADRPGFWTQVEIAA 294 Query: 66 WLLFFIALHDIGKFDIRFQYKSAESWLK---------------LNPATPSLNGPSTQMCR 110 LHD GK FQ + L P + + Sbjct: 295 L------LHDAGKVAEGFQNQLRPGGEPWGERHEVLSLAYADLLTRHLPESDRTMIAVGV 348 Query: 111 KFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQD 170 F+H + F P + + H +L Sbjct: 349 AFHHRPLISASGRDLREMYPPEAAWERKFGRDPDAPPTRPRV-QVTPARHAALLRWL--- 404 Query: 171 KSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADW 230 ++ +P + AR+ + + A + LL G +LAD Sbjct: 405 AAQLGIPPPEPDGRRLWELARDAFARLHAAWRGRVPPED-----GLVAVLLQGAVTLADR 459 Query: 231 LGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNG 290 GS V + + Sbjct: 460 SGSAH--------------------------------------VPLQTHMPLPRRYITTL 481 Query: 291 YQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQ-QIADSVIFALPTQAT 349 P Q G V+ APTGSGKTE LA+A + +D +++ LP +A+ Sbjct: 482 PAPYPHQRAAAE---TTGHLVLCAPTGSGKTEAGLAWASRQLDDMPGRPRLLWVLPYRAS 538 Query: 350 ANAMLTRMEASASHLFS--SPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWL 407 +A R S P++ + H + +++ +RA T+ Sbjct: 539 IDAARDRFIKSLLPAPGQKKPDIGVLHATAA-----RTLLARATTDDCPPGPRQARKARD 593 Query: 408 SQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEA 467 + ++F +I V T Q+L + L +++ +DE+HAYD G L A Sbjct: 594 QAAAMRLFAQRIRVATPYQLLRGAIAGPSHSSVLLEQANALIALDELHAYDPATFGRLCA 653 Query: 468 VLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDL 527 ++ +G V++LSATL L DT T P Sbjct: 654 AMRLWQMLGSRVVVLSATLAPPMIDLLKDTLDQVTVHRAPPGTAPD-------------- 699 Query: 528 LAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRL 587 + + + L+R+ G V ++ N V AQ Y+ L Sbjct: 700 -------------RHRLVLDDQPITAPQSLDRIRRWLTEGHSVLVVANTVATAQRLYREL 746 Query: 588 KELN-----NTQVDIDLFHARFTLNDRREKENRVISNFGKNG---KRNVGRILVATQVVE 639 + L H+RF DR E R+ + + G ++VATQV+E Sbjct: 747 AGHARAVLPDDPDAAILLHSRFRAEDRAAIERRISTRHPERAVGENTRRGGLVVATQVLE 806 Query: 640 QSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHI 699 SL +DFD +++ P + + QR GR++R R + + +P+ + Sbjct: 807 VSLCLDFDRGVSELAPIEAVAQRAGRVNRRGRHPDG----VVEFRVHMPE-------SAL 855 Query: 700 YSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECE 759 + + + + WL YD EW G AE Sbjct: 856 PYEEGALDAALSALRN-TPSPVISEQTVETWLRHAYD------TEW---GRQWASQAERY 905 Query: 760 KRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSH 819 ++ L + + + + + S+ +L G + Sbjct: 906 RKEFFESFLTFCDPFH---DRTEHATGLDEAFDSIEVLLESDAEEYSLRSSGPHGD---- 958 Query: 820 EQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGM 879 L + +++ + +G L+ ++ I Y+ + G+ Sbjct: 959 -------PLQAAGLLIPLRKAQIHRLHRNGRAHLDRERARRERRPPLWLINAPYSEETGL 1011 >UniRef50_D1QSB0 DEAD/DEAH box helicase n=1 Tax=Prevotella oris F0302 RepID=D1QSB0_9BACT Length = 744 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 146/723 (20%), Positives = 238/723 (32%), Gaps = 128/723 (17%) Query: 73 LHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSL 132 +HD GK + FQ + H +Y+ + +LSE Sbjct: 55 MHDTGKGHVEFQKILLGKAS---------------LWYHQRHELFSIYFIHNSNLSESEK 99 Query: 133 GDFFSFFDAAPHPYESWFPWVEAVTGHH---GFILHSQDQDKSRWEMPASLA--SYAAQD 187 V GHH G + +++ E D Sbjct: 100 -----------------TLVSFGVLGHHKSLGDLFDFVNRNYYNDEDWDEEGLSYADECD 142 Query: 188 KQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAP 247 K EE +L+ L ++ I L E+ Sbjct: 143 KLCYEEIKEILDRYELNLITKNVPCIKSIL------------RLAKNKNVEGKANIENIL 190 Query: 248 SDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAP 307 + AS ++ E Y Q+ + Sbjct: 191 -----FIGAIKQCDHMASAGIKHL------YRLEKTDFAFLYKYPFFTHQLRDAEASCS- 238 Query: 308 GLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSS 367 ++ APTG+GKTE AL + ++ + V + LP A+ NAM R+ + SS Sbjct: 239 --VILNAPTGAGKTEAALVWLKNQLEHRGQGRVYYILPYTASINAMYKRLNSCIGD--SS 294 Query: 368 PNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQV 427 + L HGN Q T + QE + K L + + T Q+ Sbjct: 295 KKVGLLHGNLMQYLDLQMENHSIDTIELQE----------QVEDFKSMLMPLKIVTPFQL 344 Query: 428 LISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADV-GGSVILLSATL 486 L + +K I+DE+HAY+ + + +L V +++ATL Sbjct: 345 LKHLFGIKGFEKGIFEWSGGYFIIDEIHAYEVKVFAQIIVLLSFAVQYLKVRVHIMTATL 404 Query: 487 PMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPIC 546 P + K+ G + + + + Y + C Sbjct: 405 PTFMRCKIASVIGPYQEIIADKQLYLS-------------------------FRRHRLFC 439 Query: 547 LADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTL 606 L +L D L+ + N G +V ++CN VD +Q+ Y+ L L H RF Sbjct: 440 LDGLLTD--YLDNIQVDINQGKKVLVVCNTVDESQMVYKYLHASKK-----VLLHGRFCA 492 Query: 607 NDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRL 666 DR + E ++ K + +LV TQ +E SLDVDFD + T P D L QR GR+ Sbjct: 493 EDRFKNEVKL--------KEDDVSLLVGTQAIEISLDVDFDLIYTAPAPLDALLQRFGRV 544 Query: 667 HRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIE--ELNGASLFFP 724 +R K P + ++IY N V+ RT + ++ E + + Sbjct: 545 NRKREKG-----ICPCYVFKERNDAD----KYIYKNAGVIERTLEVLKQIEQDEGGIIQE 595 Query: 725 DAYRQWLDSIYDDAEMDEPEWVGNGMDKFESA-ECEKRFKARKVLQWAEEYSLQDNDETI 783 + + +D +Y +E E FE E + R + E Y D+ + I Sbjct: 596 NKLQALIDVVYPCWSEEEQEDFSMIKTLFEDYVEKDLRPLEYSAEREEEFYKQFDDKKVI 655 Query: 784 LAV 786 A Sbjct: 656 PAA 658 >UniRef50_B7R551 CRISPR-associated helicase Cas3 domain protein n=1 Tax=Thermococcus sp. AM4 RepID=B7R551_9EURY Length = 868 Score = 297 bits (759), Expect = 1e-78, Method: Composition-based stats. Identities = 139/788 (17%), Positives = 268/788 (34%), Gaps = 88/788 (11%) Query: 12 GKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFI 71 KS ++ LLI H ++ L T + + + Sbjct: 27 AKSGENNA------LLIDHVKSALGRCVELYEFIENLNGTVTYKPLGNPEERFELFKGLA 80 Query: 72 A---LHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLS 128 +HD+GK + FQ + + + H + W + Sbjct: 81 KAIIIHDLGKITLDFQRRLYGKGKLPEE---LREYLTGSESIRARHEILSVLWSAGLLGN 137 Query: 129 EQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSR---------WEMPAS 179 + + AV HH S+D++ S + + Sbjct: 138 SEQDAKIRT-----------------AVLLHHYNEFFSEDKEFSHIVELYPDDIEKYLSF 180 Query: 180 LASYAAQDKQAREEWISVLEALFLTPA-GLSINDIPPDCSSLLAGFCSLADWLGSWTTTN 238 L S ++ ++I +E+ F ++ ++ D S + +A+W + Sbjct: 181 LVSKKGILEEFLRDYIKAIESEFKEDFIKKAVAEMTIDFSHIETIKEKVANWDDDLSEEV 240 Query: 239 TFLFNEDAPSDINALRTYFQDRQ---------QDASRVLELSGLVSNKRCYEGVHALLDN 289 + E D + + + +LE+ V+ + + + L + Sbjct: 241 SLYNPESFDVDFLVFLGMLRRCDYSSSGNFEIEKSLNLLEVFDDVNERIRRKILEKLRTH 300 Query: 290 GYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQAT 349 L V+ APTGSGKTE + +A + +++ LP + Sbjct: 301 EVNFGGLWQEELLSKKDSDYLVVVAPTGSGKTELGILWA------RKKGKLLYTLPLRVA 354 Query: 350 ANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQ 409 N + R+ F + L H + ++ S + + Sbjct: 355 LNDLYKRLSEEY---FDKDLVGLLHSTAFMEYVEGSGSDIEVEK--------------KV 397 Query: 410 SNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVL 469 + + + + T DQV ++ L S ++VDEV AY M + L Sbjct: 398 NAAGLLAMPVMLSTPDQVFLTGLNYYGADKVISVYPESAIVVDEVQAYTPEMTAVFLKTL 457 Query: 470 KAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLA 529 + + GG V++++ATLP + L D +E + + L L+ Sbjct: 458 RLIKEAGGKVLVITATLPPHIEYFLRREGFEIVDVLEESKRHGLNVKNLRLKRHHVKLVE 517 Query: 530 HPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKE 589 F + + + L+ +E ++ N V A Y+ + + Sbjct: 518 -----GNLFKYTNDGLKFEGLEKVLSAIEEFEK--QGFKSTMVVLNNVKKAIEAYKLISK 570 Query: 590 LNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWL 649 N ++ L H+R K+ VI + ++ +LVATQVVE S+D+DFD + Sbjct: 571 QGN-GWEVYLLHSRLP----ERKKAEVILRVKSSLEKGKKVVLVATQVVEASVDLDFDAM 625 Query: 650 ITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRT 709 IT+ P D QR GR++R+ + P + G +V+ +T Sbjct: 626 ITEISPIDSQVQRWGRVYRNRKTDYTG---APNIIVFSGVDRGTRAVYGRKIGDKVLQKT 682 Query: 710 QQHIEELNGASLFFPDAYRQWLDSIYDDAEMD-EPEWVGNGMDKFESAECEKRFKARKVL 768 + I L G +L + D R ++ +Y D + + VG ++K + EK+ +A++V Sbjct: 683 AEVIGALEGRTLGYEDE-RDTIEKVYRDEILQVYRKQVGELLEKLDYFTLEKKSEAQRVF 741 Query: 769 QWAEEYSL 776 + Sbjct: 742 RQMAGMYF 749 >UniRef50_Q74N41 NEQ022 n=1 Tax=Nanoarchaeum equitans RepID=Q74N41_NANEQ Length = 755 Score = 297 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 155/801 (19%), Positives = 286/801 (35%), Gaps = 127/801 (15%) Query: 61 QRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLY 120 + K + I LHDIGK FQ + P +P H Sbjct: 35 ETEKKLFDYLIELHDIGKCRKEFQEYIKKLEKGEKPKSPGS------------HSLWS-- 80 Query: 121 WFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASL 180 L + E + HH + S +K + ++ + Sbjct: 81 -----------LEELERILSKIDLDKEYLPLLFYFIAKHHSNLSLSNTDEKLKRQIAKLI 129 Query: 181 ASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTF 240 E + + + F + + LAD Sbjct: 130 LKLNNLLNNQPEIDLLLNQGFFEIYYKGLLKKFEKEE------LIKLAD----------- 172 Query: 241 LFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLV 300 LF SDI + ++ + ++ + K ++ + + Q + Sbjct: 173 LFGVFKISDILS----AKNILDKVNEIVYKEEITERKVEQLIGRSIDEERW---GFQKCL 225 Query: 301 DALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEAS 360 + APTG GKT TAL +A + + + LPT +++ + Sbjct: 226 SKFD----YLSLRAPTGWGKTTTALLFALN----KDYNKIFITLPTITAIEDFRQKLKNA 277 Query: 361 ASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIG 420 + F +RAI ++ E + S + I Sbjct: 278 ---------------GFKAEEYFYFYDARAILDEEDE-------RLNSLYFVQNLYSPIN 315 Query: 421 VCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQA-DVGGSV 479 + TIDQ+L+S L F++ L + +S+LI+DE+H M LL+ +L+ + Sbjct: 316 ITTIDQILLSFLQAGKYFMKRLNLRKSILIIDEIHLLTPQMLFLLKKLLEHLVPLYKIRL 375 Query: 480 ILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFS 539 +L+SATLP L + + + V+ P + R Sbjct: 376 LLMSATLPKGIIDYLSENINIKFEFVDIYELEP--------------------KYRNRER 415 Query: 540 IQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDL 599 ++ E I +ER++ G V +I N V+ A Y+RLKE N +I L Sbjct: 416 VEIELIKK----DISENIERIVEENKKGKSVLVIANTVEKAVCIYKRLKEEYNIN-NISL 470 Query: 600 FHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLL 659 H RF R+E+E + G ILV+TQV E SLDVDFD L T+ P + Sbjct: 471 LHGRFMFKHRKEREREIRDLLENKG------ILVSTQVTEVSLDVDFDVLFTEAAPISAI 524 Query: 660 FQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGA 719 QRLGR++R+ +K + + I + + R + N+ + ++ + +EEL+ Sbjct: 525 VQRLGRVNRYGKKSKSKVYIYYPKEIDKIEED---RRKKYPYNIEEIKKSWKFLEELDNF 581 Query: 720 SLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDN 779 + + +D ++ + + F+ E + K++ + W + + ++ Sbjct: 582 K---EGIFIKKIDEVFTKEFYE--GLIKGEEIFFKFREVFEDRKSQNNIHWFLQSTSEEV 636 Query: 780 DETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKR 839 + +L RD +L ++PY L++ ++Y++++ + + WK+ Sbjct: 637 GKKLLD-FRDNVTTL-IIPY------GDLVEAEIYDEITKILEEYKKLKEKPYSYDEWKK 688 Query: 840 SFSEVVDEDGLLWLEGKQNLD 860 F++ + L LD Sbjct: 689 FFAKAKAHAVSVPLYLVLGLD 709 >UniRef50_C3RBZ9 Crispr-associated helicase cas3 n=7 Tax=Bacteroidales RepID=C3RBZ9_9BACE Length = 741 Score = 296 bits (758), Expect = 2e-78, Method: Composition-based stats. Identities = 112/782 (14%), Positives = 221/782 (28%), Gaps = 130/782 (16%) Query: 27 LIYHCLDVAAVADCWWDQS-------VVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKF 79 LI H + + +F L +W LHD GK Sbjct: 7 LISHLYQNRENGQWMIQTNDEHQKGVADMAASFAGQFGLP-----SWGRALGLLHDKGKE 61 Query: 80 DIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFF 139 FQ + + + H G + Sbjct: 62 RAAFQQYIRKMNGLPTSDKKRYDDHT--------HAFVGGILAKELMG------------ 101 Query: 140 DAAPHPYESWFPWVEAVTGHHGFILHSQDQDK-SRWEMPASLASYAAQDKQAREEWISVL 198 + V + HH + + D + + + + + + + Sbjct: 102 ------KDVSHLLVNQIISHHTGLHNFGDVENILKERLLSEEINEGDISINKPLLFQEFI 155 Query: 199 EALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQ 258 ++ F + S +L AD L D ++ + Sbjct: 156 DSPFSKSKVEWKH--FHHLSRMLFSCLVDADRL-------------DTERFMDVESWRKR 200 Query: 259 DRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGS 318 +L + K ++ + + Q G + PTG Sbjct: 201 GNLATLVDLLPQLEVYMQKLQSNAADTKVNRIRRQVKEQ-CSRTSSSEKGFYSLTVPTGG 259 Query: 319 GKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSR 378 GKT ++L +A K + +I A+P + +F N++ H N Sbjct: 260 GKTLSSLLWAMKHAVSHSMNRIIIAIPYTSIIVQT----AGLLKEIFGEENVLEHHSN-- 313 Query: 379 FNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRF 438 ++ + + ++ + + I V T Q+ S+ K Sbjct: 314 ---------------FDPDDIKDEENREKAKLATENWNYPIIVTTNVQLFESMFSNKTSD 358 Query: 439 IR-GLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQAD-VGGSVILLSATLPMKQKQKLLD 496 R + S+L++DEV T + LKA + G SV+ +A+ P Sbjct: 359 CRKLHNMANSILVLDEVQMLPTGFLQPIVDALKAYQEMFGISVLFTTASQP--------- 409 Query: 497 TYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTM 556 + + + I PE+ ++ + + D Sbjct: 410 VLSGLIEGTNPKADFKGIEHIK---------EIIPEEFALHDQLRRVKLAIDDT---GRT 457 Query: 557 LERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARF-TLNDRREKENR 615 + + A + +V I N A+ Y RL + L +R E + Sbjct: 458 YDEIAAKVSEYNKVLCIVNTRKDAKELYDRL-----PNDGVKLHLSRMMCPAHLHETIGK 512 Query: 616 VISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRP 675 + + + ++ATQ+VE +D+DF + Q D + Q GR +R R Sbjct: 513 IKTLLKDGLQP--IVRVIATQLVEAGVDIDFPVVFRQEAGLDSVLQAAGRCNREGRSAMG 570 Query: 676 AGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIY 735 L + SN + + + F P + + +Y Sbjct: 571 -----HTFVFSLAAEKRNPFGSMADSNNARLNLPED-------SDWFAPSTMKAYFCQLY 618 Query: 736 DDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLP 795 + + + + + + K ++E+ L D D +I + E S+ Sbjct: 619 SRKQTFDEKDIKHWLYK---------PTELCFETASKEFRLID-DTSINVIVN-WENSME 667 Query: 796 LL 797 L+ Sbjct: 668 LI 669 >UniRef50_B8CYA2 CRISPR-associated helicase Cas3 n=1 Tax=Halothermothrix orenii H 168 RepID=B8CYA2_HALOH Length = 822 Score = 296 bits (758), Expect = 2e-78, Method: Composition-based stats. Identities = 128/891 (14%), Positives = 262/891 (29%), Gaps = 132/891 (14%) Query: 27 LIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYK 86 L H +VA + N ++SK + A+HD GK FQ Sbjct: 16 LEVHLKNVAEGCKNI------ILNKRLDLSIISKDELTDIAFLIGAVHDFGKSTTFFQNY 69 Query: 87 SAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPY 146 + +HG + Sbjct: 70 LVHGEENIF----------------SHHGLISAILAY--------------ILLKKKYTR 99 Query: 147 ESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQ----------DKQAREE--- 193 V HHG + + + + Q D ++ Sbjct: 100 LMAMIGYMVVKRHHGNLESPVEDCGETFYHIKMQINDIKQNTYNHVKNIYDNNILKDTEY 159 Query: 194 -----------WISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLF 242 ++ ++ + + I D + + F + L Sbjct: 160 CFEELFSELEEFVVEVDDISELFREIVIEDKYKNEDKAIELFLV-------TNLLYSILI 212 Query: 243 NEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVL--V 300 + D + YF+ ++ V + ++ + L N + Q + Sbjct: 213 DTDKKDAASLNNDYFKGATEEYINVQKYINKKRKEQPKKYNPGLPINKARNSFFQDVTNH 272 Query: 301 DALPVAPGLTVIEAPTGSGKTETALAYAWKLID-QQIADSVIFALPTQATANAMLTRMEA 359 + L + APTG GKT + A+A KL + +I+ LP + + E Sbjct: 273 SQIKDTNFLYSLTAPTGIGKTFASFAFANKLRELSAYGKRIIYCLPYTSIIDQNFNEFEK 332 Query: 360 S----ASHLFSSP--NLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKK 413 ++ +L H L ++I E+ + + + Sbjct: 333 IINFNLKEVYKKNPSKYLLKHHYLTPLELKKNI----DLEKDSRISRDLEKYLDDRLLLE 388 Query: 414 VFLGQIGVCTIDQVLISVLPVKHRFIRGLG-IGRSVLIVDEVHAYDTYMNGLLEAVLKAQ 472 + V T Q+L S++ K+ +++ I SV+I+DEV ++ VLK Sbjct: 389 SWESGNIVTTFVQLLESIIGNKNSYLKKFHNIVNSVVILDEVQNIPVEYYHVVGKVLKIL 448 Query: 473 -ADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHP 531 + ++L++AT P YG + N Y +N + D Sbjct: 449 GKNFNTHILLMTATQPEII-------YGNDVVNLVNEKKYNEMNVFDRVNLKIID----- 496 Query: 532 EQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELN 591 + P + D L L + ++CN + A Y+ + EL Sbjct: 497 ---------KLNPYNIEDFLGYLEL-------NFNSKTGLIVCNTISSALDIYKYVDELF 540 Query: 592 -NTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLI 650 + + T DR EK + + K K I+V+TQ++E +D+ F+ + Sbjct: 541 TSKGYHVYSLTTNLTPIDRLEKIDEINMKIDKGEK----IIVVSTQLIEAGVDLSFEEVF 596 Query: 651 TQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQ 710 P D + Q GR +R + + V I+L + + +Y + ++ + Sbjct: 597 RDFAPLDSIIQVAGRCNRSGELPQ----KGKVNIIMLKNDKEEMYCNKVY-DKVLLDICR 651 Query: 711 QHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQW 770 + + E + Y + Y + N E + + K + V + Sbjct: 652 EVLSEKKSF-IDMSKNYFSRIRESYLRQSDKLMNAICNLNYSKEKVDQDPISKFKIVKEQ 710 Query: 771 AEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNR 830 + ++ D E + + + + + + + Sbjct: 711 GGKDNIIICKNK------DIENKIE-----ELKEIYEEIKLSYNDRKKLNRLIAKKEILN 759 Query: 831 VNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMTR 881 + ++ + E ++ K +V + Y + G + Sbjct: 760 KELALYKINVYTNQLKEYEKHYIIKKFRFIKYVSYEDQKKYLYDDNIGFLK 810 >UniRef50_B0NF41 Putative uncharacterized protein n=2 Tax=Clostridium RepID=B0NF41_EUBSP Length = 807 Score = 295 bits (755), Expect = 5e-78, Method: Composition-based stats. Identities = 122/876 (13%), Positives = 244/876 (27%), Gaps = 151/876 (17%) Query: 12 GKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFI 71 K I + H L+VA +A + + ++ Sbjct: 7 AHFYKDSNNAIHIQSVSEHNLNVAYLA--MSNSPLKCLSSVAWVSG-------------- 50 Query: 72 ALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQS 131 ALHD GK+ Q + + + +H G + + Sbjct: 51 ALHDAGKYREGVQNYLRRAMNEEQV-----------RRGEEDHST-GGGFLIDKMFPATN 98 Query: 132 LGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQ-------------DQDKSRWEMPA 178 L AV HHG ++ + Sbjct: 99 LSVLIQM----------------AVFCHHGLHDCFSFEKSTIYIKERLSKKENFQNVEER 142 Query: 179 SLASYAAQDKQ-----AREEWISVLEALFLTPAGLSI--------NDIPPDCSSLLAGFC 225 +D + A++E +++ + ++ + + Sbjct: 143 YYQYLKKEDLEKRGLIAKQEVAGIIQEILGFIRIKNLSKNMYGNRDFFLGMYERTIMSLL 202 Query: 226 SLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHA 285 AD T+T F E QD LE Sbjct: 203 VDADR------TDTACFMEQRELPAPKSDEMMQDIWGKCITYLEQ-------YLKSMKSE 249 Query: 286 LLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALP 345 + Y+ + ++A L + PTG+GKT ++L + + +I+ P Sbjct: 250 SRLDEYRRDISRKCMEAGEREERLYRLTVPTGAGKTLSSLRFGLYHARKYHKRHIIYVAP 309 Query: 346 TQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQ 405 Q+ + + + + ++ H N + + I+ +TE Sbjct: 310 YQSIIDQNAEEIR---RAIHNDEIVLEHHCNVIHDDERERIRYEILTEN----------- 355 Query: 406 WLSQSNKKVFLGQIGVCTIDQVLISVLPVK-HRFIRGLGIGRSVLIVDEVHAYDTYMNGL 464 + I V T Q L ++ R I SV+I DEV A + L Sbjct: 356 ---------WDSPIIVTTAVQFLNTLFASGIGNIRRMYSILNSVIIFDEVQALPVKITKL 406 Query: 465 LEAVLKAQADVG-GSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQ 523 + G +V+L SAT P+ D ++ N P ++ G Sbjct: 407 FNLSVNFLTAFGKSTVVLCSATQPLF-------------DELDENRLLPPLSMAGNP--- 450 Query: 524 RFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVC 583 ++ R I + E + A QV ++ N A+ Sbjct: 451 -----KEYAEVFKRTKIIDATKGAGSGFAAEELQEFIWDKAETLKQVLVVVNTKKCAESL 505 Query: 584 YQRLKEL-NNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSL 642 Y+ +K+ + + RR V+ +N + I ++TQ++E + Sbjct: 506 YKEIKKKCKGSDYILFHLSTNMCAEHRR----DVLKRLEENLENEKKVICISTQLIEAGV 561 Query: 643 DVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSN 702 ++ F +I D + Q GR +RH + + + E R I Sbjct: 562 NLSFKCVIRSLAGLDNIIQAAGRCNRHGEAGLGYVY----VVGISSELENVERLAEIRKM 617 Query: 703 VRVMWRTQQHIE---ELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVG------NGMDKF 753 M E+ SL ++ R + + V +D Sbjct: 618 QESMTEVLNQFRKNPEIFDHSLSSEESIRYYYQIYLRKRMPEMEYLVSVNGVDVTLLDLL 677 Query: 754 E----SAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLL 809 E + + + + + + DG++ + + + +L Sbjct: 678 STSKTMWESMSESTKKDSKNLLLKQAFKTAGDVFEVIPEDGKVDVVVRYDEKAEKQIAIL 737 Query: 810 DGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVV 845 + + H++ L V + +++ + Sbjct: 738 EDEYATLAEHKKALRRLQPYTVGISEQFRQKLGNAI 773 >UniRef50_A6UVX5 CRISPR-associated helicase Cas3 n=2 Tax=Methanococcales RepID=A6UVX5_META3 Length = 772 Score = 295 bits (754), Expect = 6e-78, Method: Composition-based stats. Identities = 115/868 (13%), Positives = 257/868 (29%), Gaps = 129/868 (14%) Query: 25 HLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQ 84 + L H + A + L+ + + +K L HD GK FQ Sbjct: 11 YPLKKHLIMTKNRA---LSKYNSLKLKY-----FNNAIIKDILKIICLSHDFGKTTTYFQ 62 Query: 85 YKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPH 144 ++ H N S+ ++ Sbjct: 63 KYIRNEKIEKRILK--------------RHSEISFVLANY---------VIKSYLESKNI 99 Query: 145 PYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLT 204 + + + + HHG + + + D+ ++L Sbjct: 100 DNKYYQIFSLCIKKHHGNLSELLND----ASIQDEDILKKQFDELNFNFINNILNENNFP 155 Query: 205 PAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDA 264 I ++ + L L + T+ + S + + +D Sbjct: 156 KLNCDIEELISEVEELEYLCDDLKYEINDEMKIETYYLYQYLFSLLISSDK--EDAIFRQ 213 Query: 265 SRVLELSGLVSNKRCYEGVHALLDNGYQP------RQLQVLVDALPVAPGLTVIEAPTGS 318 + L +S + + + ++ V L + + + APTG Sbjct: 214 NTELGVSNEIPSDIIDYIENKPKIKPIDHLRTEIFYKISNKVHNLDLNQKIYTLNAPTGI 273 Query: 319 GKTETALAYAWKLIDQ-----QIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILA 373 GKT T +A KL ++ I +I+ LP + + + + N++L Sbjct: 274 GKTLTIFNFALKLSNRIKTEKNIDMKIIYCLPFLSIIDQNYKVLNEVLKN--PPSNILLK 331 Query: 374 HGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLP 433 H S + + + S + + +I T Q+ S+ Sbjct: 332 HH----------HLSDVVYWHEKNGEENILDENKSLHLMETWSSKIITTTFMQLFYSIFS 381 Query: 434 VKHRFIRGL-GIGRSVLIVDEVHAYDTYMNGLLEAVLKAQA-DVGGSVILLSATLPMKQK 491 K+ ++ + S++I+DE+ + L+ + + A + IL +ATLPM Sbjct: 382 NKNSDLKKFSSLSNSIIILDEIQSIPHKYWHLVNKIFRFLAEEYNIYFILTTATLPMIFD 441 Query: 492 QKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADML 551 + + +++ Y + R + H E + + + + Sbjct: 442 K------NECVELLDDKEHY-------FSNLNRIKMKIHNEPMDLTEFVGVLDEDINN-- 486 Query: 552 PDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRRE 611 N ++ N + ++ Y LKE N + +R Sbjct: 487 -------------NPDKDFLIVLNTIKSSKEVYDLLKEYNYENTEYYYLSTNIYPKERLN 533 Query: 612 KENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHR 671 + ++ N N ++ + V+TQ++E +D+ D + P D + Q GR +RH Sbjct: 534 RIEKINKNNKNNNRKII----VSTQLIEAGVDISVDIVYRDIAPLDSINQTAGRCNRHGE 589 Query: 672 KYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWL 731 + L + G+ +IY N ++ +T++ ++ + Sbjct: 590 GTEQGIIN----IVKLINDNGHPFSRYIY-NGALISKTEELLKNYDEIE---ERELLNIN 641 Query: 732 DSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGE 791 + + S E + K+ K + + L D I + Sbjct: 642 NCYFK----------KLKGYDDSSRELLEIIKSFKYNNVPKNFKLIDEIPQINLFVNVED 691 Query: 792 MSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLL 851 + + Y + K + D + + +++ + ++DE+ + Sbjct: 692 DAKKV--YAEYERIKSIKDP-FKRKREFLKIKKEFYQYIISIQKHAIKGKDILIDENKDI 748 Query: 852 WLEGKQNLDGWVWQGNSIVITYTGDEGM 879 + + Y + G Sbjct: 749 TIIDNKY--------------YNIETGF 762 >UniRef50_Q3B3C6 CRISPR-associated helicase, Cas3 family n=1 Tax=Chlorobium luteolum DSM 273 RepID=Q3B3C6_PELLD Length = 692 Score = 294 bits (752), Expect = 1e-77, Method: Composition-based stats. Identities = 112/708 (15%), Positives = 207/708 (29%), Gaps = 113/708 (15%) Query: 104 PSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFI 163 +M K +H AAG Q + GHH + Sbjct: 21 IPRRMMGKIDHSAAGAIHAVQKHA-------------------LIGKALAYLIAGHHTGL 61 Query: 164 LHS--------QDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPP 215 Q + +A Q K + L + ++ Sbjct: 62 PDWYREPGTGGQTLPERIENKDHHHLQHALQGKPPADILEVSLPTTHPCGSPTPAPELMH 121 Query: 216 DCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVS 275 +L AD+L T F+ + A + ++A L+ + Sbjct: 122 LWIRMLYSCLVDADFL----DTEAFMNPDKAQARLHAYNL----------SELKDTFNHF 167 Query: 276 NKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQ 335 R G N + L+ + PGL + PTG GKT ++A+A + + Sbjct: 168 MARKQAGAKDSPVNRARNLILEECRTNAALEPGLFSLTVPTGGGKTLCSMAFALEHAIRF 227 Query: 336 IADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQG 395 +I A+P + + +F + ++ H N Sbjct: 228 QKKRIIVAIPYTSIIEQTADQ----YRQIFGNDAVLEHHSNLDPEKGSGKY--------- 274 Query: 396 QEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIR-GLGIGRSVLIVDEV 454 + + + I V T Q+ S+ K R I SV+++DE Sbjct: 275 -------------RLASENWDAPIIVTTNVQLFESLFAAKSSACRKLHNIVNSVIVLDEA 321 Query: 455 HAYDTYMNGLLEAVLKAQA-DVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPL 513 T + +VL+ A S++L +AT P L G + + Sbjct: 322 QMLPTGYLQPVVSVLELLAEHFRTSIVLCTATQP-----VLSGRVGTGQNVL-------- 368 Query: 514 INWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLI 573 +G +L++ P+ L F Q + + + +++ A Q I Sbjct: 369 ---KGFKNDGVRELMSDPDNLFKVF--QRVTVNMLGDADERHEWDKIAEAITTQRQALCI 423 Query: 574 CNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILV 633 N + + + E D A R + + S +V Sbjct: 424 VNTRKDCRELHGLMPE------DTIHLSALMCPEHRSQVIADIKSKLI----DGESVRVV 473 Query: 634 ATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGY 693 +TQ++E +D+DF + D + Q GR +R + R V P Sbjct: 474 STQLLEAGVDIDFPRVYRAFSGLDSIAQAAGRCNREGKHERGD-----VLVFNPPKPPPP 528 Query: 694 GRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKF 753 G + M+R + A+ P A+RQ+ Y + + + + Sbjct: 529 GIMLKAEQAGKEMFRAFPEL-----ATTLMPRAFRQYFSLYYGRLNSFDVQKIMELL--- 580 Query: 754 ESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQ 801 + + A + L D+ + R + P + Sbjct: 581 ---VADAPQLNIQFRTAAMRFKLIDDKSQHGVIVRYRSERIDSNPLID 625 >UniRef50_A4FXZ4 CRISPR-associated helicase, Cas3 family n=1 Tax=Methanococcus maripaludis C5 RepID=A4FXZ4_METM5 Length = 820 Score = 293 bits (749), Expect = 2e-77, Method: Composition-based stats. Identities = 141/893 (15%), Positives = 272/893 (30%), Gaps = 136/893 (15%) Query: 26 LLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIAL-HDIGKFDIRFQ 84 LL H +V + + L + + L + I + HD GK FQ Sbjct: 12 LLKDHLFNVGKNIENIL-------VKKDLDLKLIDKELLPKLGYLIGIAHDFGKSTSFFQ 64 Query: 85 YKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPH 144 K E+ + +HG + DF Sbjct: 65 SKLNEN----------------KNSEYSHHGLISSIFGYHLLKEYVHNEDFS-------- 100 Query: 145 PYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLT 204 A+ HHG I + SR E L +EE + E L L Sbjct: 101 -----IISYIAIKNHHGNIKCPLESISSRLEK--DLKVQYKDILSRKEEVFKIYETLLLE 153 Query: 205 ------PAGLSINDIPPDCSSLLAGFCSLADW-LGSWTTTNTFLF---------NEDAPS 248 L++ D S + + D L S FL + D Sbjct: 154 YQIDLEKVFLNMEITIEDFESFIDDMEDMLDEELESSDAIERFLTCNLLYSVLVDSDKKE 213 Query: 249 DINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPG 308 N YF D + + E + + + V + N + + Q +V+ ++ Sbjct: 214 AANLSNEYFTDNVESYYDIKEYINNLKQEMAEKFVKNNM-NLLRDQFYQDVVENPMISNK 272 Query: 309 --LTVIEAPTGSGKTETALAYAWKLIDQQIA-DSVIFALPTQATANAMLTRMEASASHLF 365 + + APTG GKT T L A K+ + +I+ LP + + ME + Sbjct: 273 CYMYSVNAPTGIGKTLTVLGLANKIKSLNPKSNRIIYCLPYSSIIDQTHGEMENIFKYFI 332 Query: 366 SSP------NLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQI 419 +L H L +++ + + + + Sbjct: 333 GEEYSKKPTKYLLKHH--YLTPLLIKGLDNEEDCNLTQDSDINITYMDQKLLLESWESAN 390 Query: 420 GVCTIDQVLISVLPVKHRFIRGLG-IGRSVLIVDEVHAYDTYMNGLLEAVLKAQ-ADVGG 477 + T Q S+ K+ ++ I S++I+DE+ L++ V + Sbjct: 391 IITTFVQFFESIFSNKNSRLKKFHNIINSIVILDEIQTMPAEYYKLIKMVFEILSKRFKT 450 Query: 478 SVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPR 537 ++I L+AT P + ++ L G+ L E+L Sbjct: 451 TIIFLTATQPNLACEDSVNLVNTRYFTNNEFDRVELYKINGLTPIDEKQFLDSFEKLFF- 509 Query: 538 FSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNN-TQVD 596 G ++CN ++VA Y+ +++ ++ Sbjct: 510 -----------------------------GNSAIVVCNKINVAIKLYELIRKNEKFSEYS 540 Query: 597 IDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPA 656 + T DR+ + ++ N K ILV+TQ++E +D+ F + P Sbjct: 541 VLSLTTNITPKDRKNRIKKINKMLKGNEK----IILVSTQLIEAGVDLSFQYGFRDVAPL 596 Query: 657 DLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEEL 716 D + Q GR++R + ++I + GE IY + T++ +E Sbjct: 597 DSIIQTSGRVNRSNE------YDIGKMYLFNYVGENGRIGSSIYDPKSI-QITRELLEN- 648 Query: 717 NGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKAR----KVLQWAE 772 + Y + Y + + E ++ K + + + Sbjct: 649 ---DKYMSKDYWGLSNQYYGKYMLSGKSNLLLNSIYNLIYEMKEYNKNKILPVNMFKVIT 705 Query: 773 EYSLQD-----NDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALA 827 ++ D ++ + L + + ++ + ++ G++ E E + L Sbjct: 706 DHKKFDVIISPDETSDLKIKELIKTHEAMIQITEIYGENKMEFGKLSEKY--EILKKELN 763 Query: 828 LNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMT 880 NRV++ +S+ E L Y + G+ Sbjct: 764 ENRVSIYENILNKYSDFTHEFNGLNYIL----------SEDYNKIYDENIGVI 806 >UniRef50_A0B6V7 CRISPR-associated helicase Cas3 n=1 Tax=Methanosaeta thermophila PT RepID=A0B6V7_METTP Length = 804 Score = 293 bits (749), Expect = 2e-77, Method: Composition-based stats. Identities = 128/876 (14%), Positives = 267/876 (30%), Gaps = 120/876 (13%) Query: 26 LLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQY 85 LL+ H +V + +S + + +K A HD+GK FQ Sbjct: 17 LLVDHLRNVGEMCRRTVAESARNLD--------DAEILKNVAYIIGATHDLGKATGFFQE 68 Query: 86 KSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHP 145 E T + + HG + P Sbjct: 69 YLRE--------TDEKRRRALRSRDVTKHGLLSSLFTYAIVREHLRKR-------GCEMP 113 Query: 146 YESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQD------KQAREEWISVLE 199 AV HHG + ++ D+ + + + S + + + + ++L Sbjct: 114 GALPLVSFIAVRRHHGDLTNALDEISAIYAERERVLSVIEEQVSSLDRNECAQIFNALLG 173 Query: 200 ALFLTPAGLSINDIPPDCSSLLAG---FCSLADWLGSWTTTNTFLFNEDAPSDINALRTY 256 + ++ I D L G A D + Sbjct: 174 GVVEIDLDSLLDHILRDALKDLRGEKPLVRNLGRRNDVLPYFVAQLLYSALLDADKTDAG 233 Query: 257 FQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDAL---PVAPGLTVIE 313 + + + NG + V + + + + Sbjct: 234 LEGVDLGRVNIPPDLVDRYREARGFSERRDGINGMRNEIYHDAVSRISGWDLNERIISLN 293 Query: 314 APTGSGKTETALAYAWKLI-----DQQIADSVIFALPTQATANAMLTRMEASAS--HLFS 366 PTG+GKT T+LA A +L ++ + +++ALP + + E + + Sbjct: 294 VPTGTGKTLTSLAMALRLRRRLMNERGVMPRIVYALPFLSIIDQTCDVFEDVLESAGIRA 353 Query: 367 SPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQ 426 +++L H + +++ + + +S + + +I V T Q Sbjct: 354 DSSVLLKHHH--------------LSDITYTKGDEEFESDVSLLLMEGWNSEIVVTTFWQ 399 Query: 427 VLISVLPVKHRFIRGLG-IGRSVLIVDEVHAYDTYMNGLLEAVLKAQ-ADVGGSVILLSA 484 + ++ ++R +R I S++I+DEV A LL LK +IL++A Sbjct: 400 LFHTIFSNRNRRLRKFNRIANSIIIMDEVQAVPHRYWHLLHDSLKMLCEKFNSYLILVTA 459 Query: 485 TLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEP 544 T P+ ++ G + V + Y +R +N + ++ P Sbjct: 460 TQPLIFSEE----SGEIREAVSDKERY----FRALNRVELRPMIDAPMS----------- 500 Query: 545 ICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARF 604 L + L N ++ N + A+ Y +K L+ ++ Sbjct: 501 ------LEEFEALLEGEIHNNPEKDFLIVLNTIRSARNVYSAIKALDLRDTELFYLSTHV 554 Query: 605 TLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLG 664 + R ++ + +I V+TQ++E +D+D D + P D + Q G Sbjct: 555 VPR-----DRRDRIRRIRDERGGRRKITVSTQLIEAGVDIDADIVFRDLAPLDSINQVAG 609 Query: 665 RLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFP 724 R +R+ K R ++++ E +IY + ++ +T + Sbjct: 610 RCNRNLSKGRG------RVSVVILRDERRELCRYIY-DGFLISKTLDILRSCGEC--IEE 660 Query: 725 DAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETIL 784 + + V +GM S C + E + L + DE + Sbjct: 661 REILELNSRYFR--------VVRSGMSDETSRRCMSMLSGLEFGDLGESFRLIEEDEPRV 712 Query: 785 AVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEV 844 V + + + + + L + + AL+ + + + V Sbjct: 713 DVFVETDERASDV----WQAYRDLRSERDLWERRRRYLRLRNALSDYMISLPRRLAADLV 768 Query: 845 VDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMT 880 V+ G + + Y + G Sbjct: 769 VENQG-----------TGYISMDELPHYYDPETGFR 793 >UniRef50_Q1CWU0 CRISPR-associated helicase Cas3 n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1CWU0_MYXXD Length = 767 Score = 292 bits (746), Expect = 5e-77, Method: Composition-based stats. Identities = 145/866 (16%), Positives = 259/866 (29%), Gaps = 164/866 (18%) Query: 19 TKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGK 78 + HLL H V A ++ ++A L HD+GK Sbjct: 45 AEDGRAHLLREHLEAVGQWAAML----------------APREDLRAPALVTGRWHDLGK 88 Query: 79 FDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSF 138 + FQ + + + + +H AG W Sbjct: 89 YTRDFQIRIRKENGFEAHLEK-------EGALERDHSTAGALW----------------- 124 Query: 139 FDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVL 198 + P A+ GHH + D R + + D +AR + ++L Sbjct: 125 ---SLSRDRHLMPLAFAIAGHHSGLP---DASNLRNRVGRTEKQALLSDARARCDAPALL 178 Query: 199 EALFLTPAGLSINDIPPDCS---SLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRT 255 + P +L AD+L + F N A ++ + Sbjct: 179 DGPLGFSPEALDKLEPRQVELWTRMLFSVLCDADFLDTEA---FFDANRSAAREVPVSLS 235 Query: 256 YFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAP 315 +R + R N + L V+A PG+ + P Sbjct: 236 QLAERLRGFLR-----------EKQRRAPDTEVNRVRREVLTAAVEAAVQRPGVFSLTVP 284 Query: 316 TGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHG 375 TG GKT T++A+A + Q VI A+P + + L +I H Sbjct: 285 TGGGKTLTSMAFALEHARTQGLQRVIVAIPYTSIIEQSAEAYRQAFQGL--EHAVIEHHS 342 Query: 376 NSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVK 435 L++ + + I V T Q+L S+ + Sbjct: 343 AV----------------------DPDRETPLNRVASENWDAPIIVTTTVQLLESLFARR 380 Query: 436 HRFIRGLG-IGRSVLIVDEVHAYDTYMNGLLEAVLKAQ-ADVGGSVILLSATLPMKQKQK 493 R L + RSV+++DE + + L A D G SV++ +AT P + Sbjct: 381 PSACRKLHRVARSVIVLDEAQTLPASLLEPILDGLGALVRDYGCSVVICTATQPALGR-- 438 Query: 494 LLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPD 553 +++ R + A ++ LP Sbjct: 439 -------------------RPDFQEGLPEVREIVPASVRAFERLRRVRVRWPSSGRKLPY 479 Query: 554 LTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKE 613 + + + A V + +L A+ + + E + + A R + Sbjct: 480 AELADAVAAE----RDVLAVVHLRADARRLCELVDERLGHE-ETLHLSALMCPEHRSQVL 534 Query: 614 NRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKY 673 + + +R LVATQ+VE +D+DF + D L Q GR +R Sbjct: 535 ADIKAR----KRRREPVRLVATQLVEAGVDLDFGVVYRGLGGLDALAQAAGRCNREGLME 590 Query: 674 RPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDS 733 + + P+ + + T+ +E+ LF P++++++ Sbjct: 591 G-----LGELRVYEPETQPPRGVPRAAQD-----VTRGLLEQSPDLDLFAPESFQRYFAR 640 Query: 734 IYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMS 793 +Y DE + KF+ E K FK + D + Sbjct: 641 LYATRHRDEKG-IQALRAKFQFEEVSKAFK----------------------LVEDDWSA 677 Query: 794 LPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWL 853 ++PYV G L + E ++ AL V VP + +D L Sbjct: 678 SVVVPYV----GHAPLVNALRERGPSRERLRALQRFTVTVPRKLR--------DDWLARE 725 Query: 854 EGKQNLDGWVWQGNSIVITYTGDEGM 879 + + + G Y G+ Sbjct: 726 LARLAAETVAYLGPEHTSAYHKRFGL 751 >UniRef50_C1TQC9 CRISPR-associated helicase Cas3 n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TQC9_9BACT Length = 712 Score = 291 bits (745), Expect = 6e-77, Method: Composition-based stats. Identities = 132/840 (15%), Positives = 242/840 (28%), Gaps = 160/840 (19%) Query: 52 FCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRK 111 R + + + L HD+ K + FQ + Sbjct: 5 LARRFRIPIEI--SLLEGAAMTHDLEKANPLFQSYL-----------------LGRSRTG 45 Query: 112 FNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDK 171 NH + + S EAV HH +++++D + Sbjct: 46 VNHACPSSCFSLHLTGS---------------------LWATEAVRRHHTHMVNAKDSKQ 84 Query: 172 SRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWL 231 SL+ W + S D +L S DWL Sbjct: 85 FWIAREDSLSEIQGHMSSVIPSWRRWM----------SQEDWEDFIDTLWEPRVSEGDWL 134 Query: 232 GSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGY 291 + + + + +LE + + + Sbjct: 135 TLRSLLSLLVTADRMD-------------AIGVRSLLEEPFPAFLPIDFSVRKPTSVDYW 181 Query: 292 QPRQLQVLV--DALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQAT 349 + + +PGL + PTG+GKT T L A+++ + S+I+ALP + Sbjct: 182 RSEVHDECLQSSRGITSPGLYTLTLPTGAGKTVTGLEIAYEIASRNGYKSIIYALPFISI 241 Query: 350 ANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQ 409 + A LF ++ H + I+ + + W Sbjct: 242 IEQN----SSVAKELFGIESVQEDHS-------------QMISGKEVPDDDDVYSPWDKM 284 Query: 410 S-NKKVFLGQIGVCTIDQVLISVLPVK-HRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEA 467 S + + + + T+ Q+ S+ + + + + RSV+I+DE + Sbjct: 285 SVLFRYWRSPVILTTMVQLWNSIYDPRANSSMDFHRLSRSVVIMDEPQGIPPKFWSGMGK 344 Query: 468 VLKAQ-ADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFD 526 L +G IL++AT P G + +P + R +F Sbjct: 345 TLDFLSEKLGTYFILMTATQPQI---------GEGIEISPKRYHFPNVRHRYKVLKDKFP 395 Query: 527 LLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQR 586 L P+ L + ++ N A Y Sbjct: 396 LDDLPDLLFESLPVAR-------------------------GSGLVVLNTRKSAIRTYNL 430 Query: 587 LKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDF 646 LKE + D+ A T RR+ R+ L++TQVVE +D+DF Sbjct: 431 LKERL--EGDVYFLSAWMTPIHRRKVLKRIKQA----QLSGEPYYLISTQVVEAGVDLDF 484 Query: 647 DWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVM 706 DW+ P D + Q GR +RH R + ++Y +V ++ Sbjct: 485 DWVFRDMGPLDSVVQVAGRCNRHGDPSRMGKVLVAEII----AENKVPYCSYVYDDV-LL 539 Query: 707 WRTQQHIEELNGASLFFPDAYRQWLDSIYDD--AEMDEPEWVGNGMDKFESAECEKRFKA 764 R+++ + + F Q + + Y + + E ++ Sbjct: 540 ERSRRILRDRGN---FDERDIPQIVQTYYGEIMDGISFSPVWEKLQKGLWGPEEKEELIP 596 Query: 765 RKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYE 824 R + L + IL RD D E L +++ Sbjct: 597 RDFKGFRVFVELDQDIRYILLRLRD--------------------DKWTLESLDEKKRLA 636 Query: 825 AL-ALNRVNVPFT----WKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGM 879 + + VP W+ + + ED + L D W ++ Y G Sbjct: 637 KITQQYAIEVPIEELKQWRGELARFLTEDDIPPLGPFLGDDSWFLTSAAVGDIYDDQVGF 696 >UniRef50_A0Q254 CRISPR-associated helicase Cas3 n=2 Tax=Clostridium RepID=A0Q254_CLONN Length = 873 Score = 291 bits (745), Expect = 7e-77, Method: Composition-based stats. Identities = 125/867 (14%), Positives = 262/867 (30%), Gaps = 102/867 (11%) Query: 15 SKSLTKGNDIHLLIYHCLDVAAVADCWWDQ------SVVLQNTFCRNEMLSKQR-VKAWL 67 + ++ + L H + + + C+ ++ + + Sbjct: 23 AHTMDDNKKVETLKEHLERSIKYFYKLVENKNLDNIFLKFEAKLCKEFSDKEKSLFREMI 82 Query: 68 LFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSL 127 + I +HD+GK +I FQ + C NH + Sbjct: 83 VNTIYMHDLGKININFQ--------TIKMKNKYFKDKKDIECSNSNHSCLSSLIYMDYYH 134 Query: 128 SEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQD 187 + + ++ HH + D + + + Sbjct: 135 KKIKSDSELINKENKKKLRLFMVLNAYVISKHHTGLDKLDDFRAKLTQDDGEGQRLCSSE 194 Query: 188 KQAREEWIS----------VLEALFL---------TPAGLSINDIPPDCSSLLAGFCSLA 228 E+ + +L LF +I+ + L+ + Sbjct: 195 LCIFEDMYNKVIEFTTKDNILGKLFKLAEKTLKVYEEEEKNISVLFYIYVRLMLSTLLMC 254 Query: 229 DWLGSWTTTN-TFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALL 287 D+ + N + + + DI+ F + K + V + Sbjct: 255 DYYSTSEFENCSEVKGFNDIEDIHDFYDTFNSTNINKDTREYEKSKYGLKEDFSNVDDIN 314 Query: 288 DNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIA-DSVIFALPT 346 + + + +EAPTGSGK+ A +KLI++Q +I+ P Sbjct: 315 ILRKELFLDAEKELLRNLDKNIFYLEAPTGSGKSNVAFNLTFKLIEKQKDLKKLIYVYPF 374 Query: 347 QATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQW 406 +E +F++ IL + N + +++ ++ Sbjct: 375 NTLVEQNTRTIEK----IFNNQEYILD-SMAVINSITPIKVKNKDSDENTKDYNK----- 424 Query: 407 LSQSNKKVFLGQIGVCTIDQVLISVLP-VKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLL 465 S +++ + + T + K + + SV+++DE+ +Y Y+ + Sbjct: 425 -SLLDRQFLNYPMILTTHVSLFNYFFGISKEDLFPLVKLCNSVIVLDEIQSYKNYIWKEI 483 Query: 466 EAVLKAQADV-GGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQR 524 L +++ I++SATLP L+D + + N Y Sbjct: 484 ITFLNYYSELLNIKFIIMSATLPKLDV--LIDGESNSVNLILNREKY------------- 528 Query: 525 FDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCY 584 F +++ +S+ + D + + + + A ++ + + A Y Sbjct: 529 FKNRLFKDRVKLDYSLIDLELDDKDEKLEEILNQVIEQANSSNKNILIEFINKSTAVDFY 588 Query: 585 QRLKEL-------NNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQV 637 + LK+ N+ + DI+L DR N++ + ILVATQV Sbjct: 589 EMLKDYKYEYGLGNDDKRDIELITGDDNSIDRNIIINKI--------NKEKNIILVATQV 640 Query: 638 VEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHE 697 +E +D+D D D Q LGR++R K + Sbjct: 641 IEAGVDIDMDIGYKDISMIDCDEQFLGRINRSCLKESGIVYFF-----------NIDSAG 689 Query: 698 HIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAE 757 IY N + I E + + D Y E+V ++K + E Sbjct: 690 GIYKNDYRKQKQLTLISEKFDTKKWLENKE---FDKFY--------EYVLEIINKNGNDE 738 Query: 758 CEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQ-VYED 816 ++ + + + D E + + D S L G ++L G+ V+ Sbjct: 739 YKEGSMVNFIENIVSKLNFMDVSERMKLIDDDKMESSVFLSREIQLEGGEVLKGKEVWNS 798 Query: 817 LSHEQQYEALALNRVNVPFTWKRSFSE 843 + + V + S+ Sbjct: 799 YKELLKDNEMDYAERKVKLSKVVSYMN 825 >UniRef50_C7NNV2 Putative helicase n=2 Tax=Halobacteriaceae RepID=C7NNV2_HALUD Length = 864 Score = 291 bits (745), Expect = 7e-77, Method: Composition-based stats. Identities = 142/947 (14%), Positives = 277/947 (29%), Gaps = 172/947 (18%) Query: 15 SKSLTKGNDIHLLIYHCLDVAA-VADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIAL 73 S G + L H DVA VA D + + +++ + + Sbjct: 6 SHPPEGGREGVALEVHLADVADRVAHVVPDDATTP----------TDGSLRSVVETLAWV 55 Query: 74 HDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLG 133 HD GK FQ E P +H G + Sbjct: 56 HDFGKATTYFQEYLLEDSEADPPMLR-------------HHAPIGSFAAYH--------- 93 Query: 134 DFFSFFDAAPHPYESWFPWVEAVTGHHGFILH----------SQDQDKSRWEMPASLASY 183 D E+ AV HHG + + +D D + + Sbjct: 94 ----ALDTQGFDTETCLAGFVAVAKHHGRLPNVAEYVVDRTHRRDGDSRQNSVEKRQTVV 149 Query: 184 AAQDKQAREEWISVLEALFLTP---------------AGLSINDIPPDCSSLLAGFCSLA 228 Q + + E +F +G +++I + AG Sbjct: 150 LKQIGDIHDTVPDLAETVFENATGGSGGWESFVRSYQSGSLLSEIEETVGTQTAGRGVDP 209 Query: 229 D-------------WLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVS 275 D W T S+ A + D LE Sbjct: 210 DALSSSCYGLVLQCWSALVLADKTSAAGAANESETYAPSQPGFETISDYIEDLEAGVDAD 269 Query: 276 NKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQ 335 + + L + G+ + PTG GKT T L+ A+ L D Sbjct: 270 KAGTKTERLNYHRSDARKNVLDNVASFAESGGGVATLTLPTGMGKTLTGLSAAFALRDAL 329 Query: 336 IADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQG 395 + V++ LP + + ++ ++ + L H S +S ++ Sbjct: 330 GGNRVVYGLPFTSIIDQVVDEIQEIYETDTAGRLLTAHHHLSETTIRDTDDQSADDADRN 389 Query: 396 QEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVL-PVKHRFIRGLGIGRSVLIVDEV 454 + A + W + V T Q+ S+ P + ++ + +V+++DE Sbjct: 390 DDVAGMLGESWR---------AGVTVTTFVQLFESLAGPQNRQSMKLPALRDAVVVLDEP 440 Query: 455 HAYDTYMNGLLEAVLKAQ-ADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPL 513 + L+ ++ +VI ++AT P + + + V++ Y Sbjct: 441 QSLPLDWWKLVPRLVDVLTEQYNATVIAMTATQPRLFEDEF--------ELVDDPDRYFE 492 Query: 514 INWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLI 573 + R S + ++ + AA +G + Sbjct: 493 VVRRVSYELDD--------------STERYIESQSEPKSYAAAANELRAAVESGQTTLAV 538 Query: 574 CNLVDVAQVCYQR------------------------------LKELNNTQVDIDLFH-- 601 CN +D A+ ++ L + D L H Sbjct: 539 CNTIDSARELTEQVGDGSFVDVGRLYDDELQEAGSADDVDPVELAKRVAATDDNALLHLS 598 Query: 602 ARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQ 661 R DR +I +R + ++TQ+VE +D+ FD + P D + Q Sbjct: 599 TRLRPADRL----TLIETAKALTERGHPTLAISTQLVEAGVDISFDRVFRDLAPIDSIVQ 654 Query: 662 RLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRT-QQHIEEL--NG 718 GR +R + + + V + +PD + E +Y+ + T + ++ Sbjct: 655 AAGRCNRSFEREQG---VVTVWWLDVPDEQSKTPAEAVYNRGTTLLPTVADTLRQIRDES 711 Query: 719 ASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQD 778 SL D R+ ++ ++ D+ D + A+ ++ L Q Sbjct: 712 GSLSETDVARRGVEWYFERLREDKDVGKQTYADWVDDAKAKE-------LGTISLIDEQL 764 Query: 779 NDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWK 838 + E ++ T + Q + + L GQ+ ++ + Sbjct: 765 SAEIVVTRTPAERERAEAIRNAQRNFEFETL-GQLVDETKPLRISVPYYSEDSETADAIT 823 Query: 839 RSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMTRVIPA 885 +V+++G+ L+ +QN + G V+P Sbjct: 824 -DLPPLVEDEGIYELDVQQNPSH-----------FDRTTGF--VVPE 856 >UniRef50_A8UUT3 Predicted helicase n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UUT3_9AQUI Length = 773 Score = 291 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 137/855 (16%), Positives = 265/855 (30%), Gaps = 129/855 (15%) Query: 46 VVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPS 105 + L N + L K + ALHD GK FQ + P T L Sbjct: 23 LELMNFYMEEVPLLDNETKTTIAVSTALHDFGKCTSYFQEYMRALMEGVRPKTDRLKE-- 80 Query: 106 TQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILH 165 H + F F A HH Sbjct: 81 --------HAFLSGVYTFYSLKELVDDPHLFLFS-------------FVACKRHHTNPYS 119 Query: 166 SQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAG------LSINDIPPDCSS 219 ++ E L + + L D PD Sbjct: 120 FTEETSIIDEDLEFLKKQIESIDEGKANIFLSNLNLPEPVKDAVYFKKREFLDNLPDVLG 179 Query: 220 LLAGFCSLADWLGSW-TTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKR 278 + + F + D + + + + + +VS K Sbjct: 180 EIKRLKRDVRKCKTEIKDFVKFQYIFSLILDSDKTEAGAKPFRPERVEKIPPKAVVSFKE 239 Query: 279 CYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLI-----D 333 + ++ + +VL + + L I PTG GKT T A+A KL + Sbjct: 240 KNLKEDSPINRLREEAFREVLEHKIDTSQRLYSITLPTGMGKTLTGFAFALKLRKTIVKE 299 Query: 334 QQIADSVIFALPTQATANAMLTRMEASASHLFSSPN--LILAHGNSRFNHLFQSIKSRAI 391 +I++LP + + +E F + L+L H + F + Sbjct: 300 TGTVPRIIYSLPFLSIIDQNAEVLERVLEEEFKEVSGRLLLKHHHLSQAGDFGEFEFS-- 357 Query: 392 TEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLG-IGRSVLI 450 +S+ + + ++ + T Q +++ ++ R + S++I Sbjct: 358 ---------------VSRVLTEGWNSEVVITTFVQFFEALISCRNSTSRRFNKLANSIVI 402 Query: 451 VDEVHAYDTYMNGLLEAVLKAQAD-VGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNS 509 +DEV + T LL ++K ++ +G I ++AT P ++ + + Sbjct: 403 LDEVQSLPTKYWHLLREMIKEVSESLGTYFIFMTATQPYLVEE---------CVELASKE 453 Query: 510 AYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQ 569 Y L +++ F + E + + L + Sbjct: 454 RY----------------LKDLDRITAHFDL--EEKTIDEFLDGIE--------FRKDKT 487 Query: 570 VCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVG 629 I N + ++ Y++L+E + DI +R+E+ R+ K+ Sbjct: 488 YLFIANTIASSKELYEKLRERL--EEDICYLSTSVVPYERKERIGRI--------KKGDY 537 Query: 630 RILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPD 689 R++V+TQ+VE +D+DFD + P D L Q GR +R+ + R + L D Sbjct: 538 RVVVSTQLVEAGVDIDFDVVYRDFAPLDSLNQSAGRCNRNMARGRGEFR-----VVRLVD 592 Query: 690 GEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNG 749 +G+ + +Y + ++ TQ +E+++ + ++ + W G Sbjct: 593 EKGHPFTKGVY-DAVLLHITQTLLEDIDS---LSEKDFTLLIEDYFKKV------WEGMS 642 Query: 750 MDKFESA-ECEKRFKARKVLQWAEEYSLQDND-ETILAVTRDGEMSLPLLPYVQTSSGKQ 807 DK E E K F+ + L D+ + E ++ + K Sbjct: 643 KDKSEEILEAVKCFRFTGQDVSIRNFRLIDDQPYKRDVFIQLNEEAVEV-----WERAKT 697 Query: 808 LLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGN 867 +L + L+ Q E + + + V D L+ N+ ++ Sbjct: 698 VLKDLRAKKLNVFQAKEEFEK----LKSDFYKFVVSVNVRDNQPLLDSDLNM--FLVNTE 751 Query: 868 SIVITYTGDEGMTRV 882 + Y G Sbjct: 752 ELDRYYDPGTGFISA 766 >UniRef50_D1VVR9 Crispr-associated helicase Cas3 core n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VVR9_9FIRM Length = 853 Score = 289 bits (739), Expect = 4e-76, Method: Composition-based stats. Identities = 129/910 (14%), Positives = 291/910 (31%), Gaps = 125/910 (13%) Query: 14 SSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIA- 72 + LI H ++ A L L + + Sbjct: 11 AHMDQKDPKRRQRLISHLINTAE-----------ESRKIGEKVGLGN------LCYIVGV 53 Query: 73 LHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWF---------N 123 LHDIGK FQ K + +K +H + G + N Sbjct: 54 LHDIGKIKEDFQNKLKGNS-----------------SKKVDHSSLGGVFILKLLNDYEEN 96 Query: 124 QDSLSEQSLGDFFSFFDAAPHPYESWF-PWVEAVTGHHGFI--LHSQDQDKSRWEMPASL 180 D L + F+ + A ++ + + ++ HHG + + + + Sbjct: 97 YDLKEWDKLNNIFNADEFAVDEFDYYNNILIYSIMSHHGQYNMVRKNKEGEYIYTNKYRE 156 Query: 181 ASYAAQDKQAREEWISVLEALFLTPAGLS--INDIPPDCSSLLAGFCSLADWLGSWTTTN 238 ++K E++I ++ L L + + ++ +L Sbjct: 157 IKEKKENKNLDEDFICYIKYLEKNNIFLKDIYIEGFKEYLKIIKKLRNLTIRTSEKKLEA 216 Query: 239 TFLFNEDAPSDINALRTY--FQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPR-Q 295 + + + ++ +D ++++ L+ + + ++ YQ + Sbjct: 217 FYFYKTLLIRLVVSILKSSDIKDSINSYEKIIKDEDLIEKENLIKKFEENINRKYQSFGK 276 Query: 296 LQVLVDAL-------------PVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIF 342 Q ++ + G+ + PTG+GKT +L Y + Q + I+ Sbjct: 277 AQTKINKIRNKISNKIFERSKEDTGGIYRLNLPTGAGKTLLSLRYGINQMRYQTKERFIY 336 Query: 343 ALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQ 402 + + ++ ++ + +L H ++ + +S + + + ++ Sbjct: 337 VTSYLSVLEQNASEIKTILNN----DDYVLEHHSNVVEYDEKSYDEDDDSFESIRKKYLL 392 Query: 403 CCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFI-RGLGIGRSVLIVDEVHAYDTYM 461 + + + T+ Q SVL K + R + SV+I+DE+ + T + Sbjct: 393 DD----------WSSPVILTTMVQFFNSVLKGKSSNLTRFKSLINSVIILDELQSLPTEV 442 Query: 462 NGLLEAVLKAQAD-VGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVN 520 L L + +++L +AT P+ L Sbjct: 443 IYLTNLFLNFMKVVMNSNIVLSTATQPIYDDINLKHRLDYGD--------------AFNK 488 Query: 521 GAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVA 580 L E+ R ++ + + + N +I N V Sbjct: 489 NTDIISLTGDDEKTFERVKLKLYKNPREEYSIEDLKY---LILENKDKSTLIILNTKSVV 545 Query: 581 QVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQ 640 + Y+ ++E ++ D+ T R EK + + K +V+TQ++E Sbjct: 546 KKLYELIEEDY-SEKDLYYLTTNLTAYHRLEKIAEIKNRLKAGDKIC----VVSTQLIEA 600 Query: 641 SLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIY 700 +DVDFD+++ D + Q +GR +R +K T ++ + + + Sbjct: 601 GVDVDFDFVVRSLTGMDSIIQAMGRCNREGKKEEA-------FTYIIKLHKEIEKTSMLK 653 Query: 701 SNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEK 760 ++E+ + +Y + + + + N + E+ Sbjct: 654 GIDDRKMACDAILDEVKKEQ-NIEKLVNDYFGKLYANLKEKDLIGILNLLS-LNKNMKEE 711 Query: 761 RFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYV---QTSSGKQLLDGQVYEDL 817 K K S +D+ D E +L L + + G QL+D + Sbjct: 712 IIKFCKNNPDNPYISCRDDKY-----VEDRESTLGLNLFQSFKEAYDGFQLIDNSQKTAV 766 Query: 818 SHEQQYEALALNRVN-VPFTWKRSFS-EVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTG 875 ++ E ++NR+ + +K +++ ++ E L ++ V + Sbjct: 767 VMYKETED-SINRIRCLEDDFKETYNMNILKEIKKLIKFLSRH--TVVVNEKDLTYCENI 823 Query: 876 DEGMTRVIPA 885 +GM V+P Sbjct: 824 LDGMIYVVPE 833 >UniRef50_Q182D7 Probable ATP-dependent helicase n=11 Tax=Clostridium difficile RepID=Q182D7_CLOD6 Length = 805 Score = 289 bits (738), Expect = 4e-76, Method: Composition-based stats. Identities = 140/857 (16%), Positives = 287/857 (33%), Gaps = 120/857 (14%) Query: 12 GKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFI 71 KS T L+ H D+ V + + L + L Sbjct: 14 AKSYNLRTNQ-QEQTLVEHIKDLFEVLESILE------------LNLYSDKDVEILKICC 60 Query: 72 ALHDIGKFDIRFQYKSAES----WLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSL 127 ALHD+GK + Q K + + L + + H + Sbjct: 61 ALHDLGKINSIMQQKMEINNKISYSCSEEERKKLESDKKSLKKIARHNIFSGAFLKDI-- 118 Query: 128 SEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQD 187 + E +++ HHG S+ + Sbjct: 119 -----------LEKMNLSEEDKLYIYKSIMLHHGNYEDYMRLSISKVQEEIYEYIEKGIL 167 Query: 188 KQA---REEWISVLEALFLTPAGLSINDIPPDCSSLLA-GFCSLADWLG---SWTTTNTF 240 ++ ++ S + ++ + + D L+ +D+ + N Sbjct: 168 EKEEFNLKDIESYINSILNVDFKFGEDVLDYDYIDKLSESMFIDSDYNNGQIDDSVLNYR 227 Query: 241 LFNEDAPSDINALRTYFQDRQQDASR-----VLELSGLVSNKRCYEGVHALLDNGYQPRQ 295 F + L + +Q + E + Y+ L N + Sbjct: 228 KFKYILYKGMLNLIDHSASSRQKGIKFYNDFTDEEIDNMILNEIYKSQGNLEKNNIEFNT 287 Query: 296 LQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLT 355 +Q + L LTV A TGSGKT ++ F +P + +A + Sbjct: 288 IQKRLRELSGRNVLTV--AFTGSGKTAADY--------RKTFKRKFFLVPNKISAESFYR 337 Query: 356 ----RMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSN 411 + + S+ + L HG+ + E E +V + + S Sbjct: 338 KNIFQNKNDLDTRSSNDYIGLLHGDINLY---------SENEDNGEHDFVLTLRDIDLSI 388 Query: 412 KKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKA 471 F + T+DQ+L+S+ + + + VDEVH + M +L ++ Sbjct: 389 --NFCKPCVIATVDQLLLSMFKFPGYEKIFAAVKNASITVDEVHLLEPKMFLILIYFMQF 446 Query: 472 -QADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAH 530 + L++ATLP K+++++ + + N + + + ++ Sbjct: 447 ACKYLDVDFHLMTATLPKSYKEQMINKGIIFQEESNENV---------TDKGEIVFIESN 497 Query: 531 PEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKEL 590 E+ I + + + + A ++ +I N +D Y+ LKE Sbjct: 498 KEE-----EICEGKDVKVSFIKEKEIKSIVEDALENKQKILIIKNTIDSVNRTYEFLKEN 552 Query: 591 NNT---QVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFD 647 + VDID+ H+RF D++EK +++++ G I ++TQ VE SLD+DF+ Sbjct: 553 LSDKYGGVDIDVLHSRFKFKDKKEKYSKILN--------GEGDIWISTQSVEISLDLDFN 604 Query: 648 WLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMW 707 +I+ D L QR+GR +R+++ + +P + IY N + Sbjct: 605 IIISDLATMDSLIQRMGRCNRNNKYEYGNFYILP-------------SEDKIYDNK-LKN 650 Query: 708 RTQQHIEE-LNGASLFFPDAYRQWLDSIYDDAEMD---EPEWV--GNGMDKFESAECEKR 761 T+ +++ L S+F + LD YD++ + E ++ + E Sbjct: 651 TTKNILKDILKTNSIFTMGIRKTILDDYYDNSVVKKYFEENFISCDKEIKNIYGINKEIF 710 Query: 762 FKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQ-TSSGKQL------LDGQVY 814 + + ++ D+ + + RD ++S ++ ++L + G ++ Sbjct: 711 DGLDLIFNFEPYKNIVDSKKEAAKIFRDVDVSYKIILEEDFYKEDRELQQDSIQVSGFIF 770 Query: 815 EDLSHEQQYEALALNRV 831 L + + V Sbjct: 771 NRLYYYGLISKVEGYMV 787 >UniRef50_D1Y4A6 Crispr-associated helicase Cas3 n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y4A6_9BACT Length = 823 Score = 288 bits (737), Expect = 5e-76, Method: Composition-based stats. Identities = 127/910 (13%), Positives = 248/910 (27%), Gaps = 147/910 (16%) Query: 14 SSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIAL 73 S K+ + L H VA L CR + L + L Sbjct: 4 SRKARDGSDRREALADHVRLVAD-----------LCERSCRKFGVPS------LGRLVGL 46 Query: 74 -HDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSL 132 HD GK ++Q S + H G Sbjct: 47 VHDAGKSSEQWQRYL----------------LSDEQSEMIPHAPTGAKLL---------- 80 Query: 133 GDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQARE 192 F + V GHH + + D + A +A Sbjct: 81 CRIAQEFPDESYERYVAEIAELVVWGHHSGLPDMVEPDGAASYEERLQEPPDAAQAEAIA 140 Query: 193 EWIS--VLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAP--- 247 + V + + ++ AD E Sbjct: 141 RFQQGVVPQDDIRKLLKSAAEELRTIMKVFTERC--NADVYPEDVRQENRSSGEKRKILH 198 Query: 248 ----------------------SDINALRTYFQDRQQDA-----SRVLELSGLVSNKRCY 280 +++R + A ++ KR Sbjct: 199 RRAEKREFFRGLLTRMAFSCLCDGDRYASACWENRLEAATYTTDPKLWAELAAKLEKRLD 258 Query: 281 EGVHALLDNGYQP--RQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIAD 338 A ++ + + + G+ + TG GKT + A L + D Sbjct: 259 GFPDAPINTARRQISDECLESAKKMREPSGIYRLNVVTGGGKTLAVMRSALYLARKFGKD 318 Query: 339 SVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEE 398 V + P + + + F +++L H ++ + R ++ Q + Sbjct: 319 HVFYVAPFTTIIDQTAQNLRET----FGRGDILLEHHSNLVGPGTDENEKRLHEKEDQLD 374 Query: 399 AWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLG-IGRSVLIVDEVHAY 457 + + + I + + Q L ++ + + +R + + SVLI DEV + Sbjct: 375 KFAER-----------WDIPIILTSQVQFLEALFSGRGQCVRRMHQLCNSVLIFDEVQSV 423 Query: 458 DTYMNGLLEAVLKAQADV-GGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINW 516 + + A G +VIL SAT P + + + Sbjct: 424 PVKCISMFNLAIDFLAGFCGCTVILCSATQPAL-------------EEIARPLRFSEPAD 470 Query: 517 RGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNL 576 + +RF + +Q + T+ E ++ + V ++ N Sbjct: 471 LVRDVRKRFPVFDR---------VQIVDKTQEEPYTAETLSEFVLQLSREIRSVLIVLNT 521 Query: 577 VDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQ 636 + Y +LK V R K + S ++ I V+T Sbjct: 522 KKAVKEAYAQLKAKGRAGVAFFHLSTNMCGAHRLAKIAEMNSLLAQH----KAVICVSTN 577 Query: 637 VVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRH 696 ++E +D+ FD +I D L Q GR +R+ R ++ + G Sbjct: 578 LIEAGVDISFDAVIRSKTGLDSLTQASGRCNRNKFVERGY------VYLIRYEETGLAML 631 Query: 697 EHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYD--DAEMDEPEWVGNGMDKFE 754 + M R + F + R + Y MD P G F+ Sbjct: 632 PDLRRAQDAMTRVLSDMPFFPVQDYFSEETLRAYYRYYYHGQRGSMDYPAPHDAGRTLFD 691 Query: 755 SAECEKRFKARKVLQWAEEYSLQ--DNDETILAVTRDGEMSLP--LLPYVQTSSGKQLLD 810 + + + + T R + + L+PY + ++ L Sbjct: 692 YLAANRTARVEYESRHERAHHGILHQAFRTAGREFRVIDENTTGILVPYGKGIELQRQL- 750 Query: 811 GQVYEDLSHEQQYEALALNRVNV-PFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSI 869 + L + + L V+V P ++ +++D L + + + Sbjct: 751 LSASDYLDKKTLFRELQRYSVSVYPDGLRK-----LEKDHKLLFFEDLGIYCLLDEE--- 802 Query: 870 VITYTGDEGM 879 +Y + G+ Sbjct: 803 --SYDDEYGI 810 >UniRef50_B9KL20 CRISPR-associated helicase, Cas3 family n=1 Tax=Rhodobacter sphaeroides KD131 RepID=B9KL20_RHOSK Length = 744 Score = 288 bits (737), Expect = 6e-76, Method: Composition-based stats. Identities = 114/780 (14%), Positives = 209/780 (26%), Gaps = 144/780 (18%) Query: 9 HYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLL 68 ++ S D L H V L LS+ Sbjct: 4 QFYAHSGH-RDDRTDWQTLPDHLAAV-----------ERLARARAAPLGLSE------AA 45 Query: 69 FFIA-LHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSL 127 LHD+GK+D F + +H AG Sbjct: 46 GIAGRLHDLGKYDPAF------------------DRVLRGENLHVDHSTAGGRAL----- 82 Query: 128 SEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQD 187 A+ GHH + +D + E + A + Sbjct: 83 ----------LDSVPAGLRPVAEVLAYAILGHHAGLPDKVSEDSACLERRIASAPHNLAP 132 Query: 188 KQARE------EWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFL 241 + R + L A + D+ + + AD+ + T Sbjct: 133 EWERHFPIDLAAAGTELRAHVRADPHKAPFDLSVAVRMIFS-CLVDADFRDTET-----F 186 Query: 242 FNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVD 301 +++ + QD D + + N + L + Sbjct: 187 YDQLEGRARSREWPTLQDCLPDLRQKFAAH-------MAGFERSTEVNRLRAEILAHVTV 239 Query: 302 ALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASA 361 + PGL + PTG GKT +L +A +++A+P + + Sbjct: 240 QAAMPPGLFTLSVPTGGGKTLASLGFALDHAALHGHRRIVYAIPYTSIIDQT----AKVF 295 Query: 362 SHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGV 421 L ++ H ++ + ++ + + V Sbjct: 296 RDLLGQEIVLEHHSAIETRDGGEAGRIKSHLAMED------------------WAAPVVV 337 Query: 422 CTIDQVLISVLPVKHRFIR-GLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQA-DVGGSV 479 T Q+ S+ + R + +++++DE M A++ A G +V Sbjct: 338 TTNVQLFESLFAARASRCRKLHNLAGAIIVLDEAQCLPRPMLLPTLAMIDTLATHYGCTV 397 Query: 480 ILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFS 539 +L +AT P +L L + PE Sbjct: 398 VLCTATQPAFDSSQLRHGGLLLSG-----------------------RELAPEPQELARK 434 Query: 540 IQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDL 599 ++ I A + D ++ M A + +I N A Y+ E + Sbjct: 435 LKRVNIARASTMDDTALISAMRGAPQS----FVIVNSRRHALALYRAAVEEGIQN--VVH 488 Query: 600 FHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLL 659 R RR + ++ L++T ++E +D+DF D + Sbjct: 489 LSTRQYPAHRRRIIETIKGRLTQSL----PCRLISTSLIEAGVDLDFPRGWRAEAGLDSV 544 Query: 660 FQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGA 719 Q GR++R ++ T+ + M T Sbjct: 545 IQAAGRVNREGKRT----LSASTLTVFSAPENSPP--PEVARLAEAMQATAN-----KFN 593 Query: 720 SLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDN 779 LF DA R W + +Y A F+ AE + A +Y L D+ Sbjct: 594 DLFDIDAIRDWFNEVYWRATPQRLGQGMTKSMIFDGAET-----GFPFRKLASDYRLIDS 648 >UniRef50_C5VU02 Crispr-associated helicase Cas3 n=1 Tax=Clostridium botulinum D str. 1873 RepID=C5VU02_CLOBO Length = 877 Score = 287 bits (735), Expect = 9e-76, Method: Composition-based stats. Identities = 114/831 (13%), Positives = 253/831 (30%), Gaps = 96/831 (11%) Query: 41 WWDQSVVLQNTFCRNEMLSKQR-VKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATP 99 + + + CR ++ + ++ I +HD+GK +I FQ +L Sbjct: 55 LENIFLKFEEKLCREFSDEEKNLFREMIINTIYMHDLGKININFQ--------RLKMHNK 106 Query: 100 SLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGH 159 NH + + + ++ ++ H Sbjct: 107 YWENHKEFEFNNSNHSCLSSLIYMDYYYKKIKSNSNLNSLESKKLLKIFMILNAYVISKH 166 Query: 160 HGFILHSQDQDKSRWEMPASLASYAAQDKQAREEW----------ISVLEALFL------ 203 H + +D E + + E+ ++L+ LF Sbjct: 167 HTGLDKLEDFKVKLTEDDGEGQRLCSSELSLFEDIYNDKIKFTTNENILKNLFKNTEKNL 226 Query: 204 ---TPAGLSINDIPPDCSSLLAGFCSLADWLG-SWTTTNTFLFNEDAPSDINALRTYFQD 259 +I+ + L+ + D+ S + + +I F + Sbjct: 227 RRYEEEETNISFVFYIYERLMLSILLMCDYYATSEFEHGDEVKGFNEIENIYDFYDEFNN 286 Query: 260 RQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSG 319 + + KR + + + + + + +EAPTGSG Sbjct: 287 TKINKDTREYEKNEYDTKRDFSNLKDINILRKELFLDAEKELLKNLDKNIFYLEAPTGSG 346 Query: 320 KTETALAYAWKLIDQ-QIADSVIFALPTQATANAMLTRMEASASHLFSS-PNLILAHGNS 377 K+ A ++LI++ + +I+ P + + +E ++ N+ + + + Sbjct: 347 KSNVAFNLTFRLIEKERNLKKLIYVYPFNTLVDQNIKTIEKIFNNKKDVLNNMAVINSIT 406 Query: 378 RFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLP-VKH 436 + + I S +++ + + T + K Sbjct: 407 PIKIRKKDLDDNTIDYNT------------SLLDRQFLNYPMILTTHVSLFNYFFGISKE 454 Query: 437 RFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQAD-VGGSVILLSATLPMKQKQKLL 495 + SV+++DE+ +Y Y+ + LK ++ + I++SATLP L+ Sbjct: 455 DIFPLAKLCNSVIVLDEIQSYKNYIWKEIITFLKYYSEFLNIKFIIMSATLPN--LDILM 512 Query: 496 DTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLT 555 D + N Y FD ++ +S+ L Sbjct: 513 DDESNSISLISNRDKY-------------FDNKLFKNRVKIDYSLLDSADIEDSKDAKLE 559 Query: 556 ML-ERMIAAANAG-AQVCLICNLVDVAQVCYQRL---KELNNTQV----DIDLFHARFTL 606 + ++ +N + + D A ++ L KE DI+L Sbjct: 560 KIFNHVVEQSNNSEKNILIEFISKDTAVKFHEMLIEYKEEYGLGTQDVRDIELITGDDNS 619 Query: 607 NDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRL 666 +R + N++ + N ILVATQV+E +D+D D D Q LGR+ Sbjct: 620 IERNKIINKITK------EENKNIILVATQVIEAGVDIDMDIGYKDISMLDCDEQFLGRI 673 Query: 667 HRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDA 726 +R K G +++ Y + + E+ + Sbjct: 674 NRSCLKESG-------IVYFFNLDSAGGIYKNDYRKPKQLTL---ISEKFHTRRWLENKE 723 Query: 727 YRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAV 786 + ++ + + + + +F + +E L D+++ Sbjct: 724 FYKFYKHVLEVINKNGTDKYKENSMTNFVKNSMNKFDFINI---SERMKLIDDNKM---- 776 Query: 787 TRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTW 837 E S+ L ++ G+ L ++++ Q + V + Sbjct: 777 ----ECSVFLNRELELDDGRVLKGYEIWDSYKELLQNNEIDYAEKKVKLSK 823 >UniRef50_D2RJ92 Metal dependent phosphohydrolase n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RJ92_ACIFE Length = 728 Score = 287 bits (734), Expect = 1e-75, Method: Composition-based stats. Identities = 100/741 (13%), Positives = 198/741 (26%), Gaps = 158/741 (21%) Query: 12 GKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFI 71 + LL+ H V + + + +K Sbjct: 12 AHLDPEGKRAP--QLLLDHLRQV---------------SRLAEEFAPTPE-MKEAARQCG 53 Query: 72 ALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQS 131 LHD+GK+ FQ + + +H AG Sbjct: 54 LLHDVGKYSADFQNYL-----------------LGKKHGRVDHSTAGAQLL-------AG 89 Query: 132 LGDFFSFFDAAPHPYESWFPWVEAVTGHHGFI-----LHSQDQDKSRWEMPASLASYAAQ 186 G+ S + + GHH + + + + Sbjct: 90 NGNLISSME------------AFCIAGHHAGLSDLGSPTDLPGENTFSARVKKKVPDCSA 137 Query: 187 DKQAREE--WISVLEALFLTPAGLSINDIPPDCSSL--LAGFCSLADWLGSWTTTNTFLF 242 KQ E + +E D L L D+L T ++ Sbjct: 138 WKQELEAPKPVQRIEQAISDFQSQGQMDFIGCGLWLRMLYSCLVDGDFL----DTEAYMQ 193 Query: 243 NEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDA 302 + + LE G + N + LQ + Sbjct: 194 GGAVQRGGF---ASLEQLHERFFSALEEKGFFHPQNAL--------NRKRCEILQRCIQK 242 Query: 303 -LPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASA 361 + + PTG GKT +A A+A + +I+ +P + + + Sbjct: 243 GKDKEDRIYTLTVPTGGGKTISAFAWALEKARTCGKRHIIYVIPYTSIIEQTADILRSYL 302 Query: 362 SHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGV 421 N+I H + + + R + + + + V Sbjct: 303 ----GEENVIEHHSQVEYEDKDEKMDPRRLATEN-------------------WDAPVIV 339 Query: 422 CTIDQVLISVLPVKHRFIR-GLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQ-ADVGGSV 479 T Q S+ + R + S+L+ DE + + L+A S Sbjct: 340 TTNVQFFESLFANRSSRCRKLHNVANSILLFDEAQMFPVEYMIPVLRSLEALVRHFSCSA 399 Query: 480 ILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFS 539 +L SAT P + + + + + R Sbjct: 400 LLCSATQPRLDQ------------------------FLQGKPQELMEDIPGLYDFFKRTQ 435 Query: 540 IQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDL 599 + E + +++ A +A Q IC A+ R++ + Sbjct: 436 LVNEGLLS---------YDQVAEALDAQPQSLCICLTKGEAREIASRIR------GEYLY 480 Query: 600 FHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLL 659 R++ + + KR +V+T ++ +D+DF + + D L Sbjct: 481 LSTNLCPAHRQQVIHAMKEKL----KRGEPCRVVSTSIISVGVDIDFPVVYVEENGVDAL 536 Query: 660 FQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGA 719 Q GR +R ++ + + + + E + + R H+ E Sbjct: 537 IQGAGRCNREGKR------KAEDSLVHIFATENSRKSHFLEQ-----ERQSTHMVEQKFP 585 Query: 720 SLFFPDAYRQWLDSIYDDAEM 740 L P+A ++ D +Y + Sbjct: 586 DLAAPEAIAKYFDWLYHAKDA 606 >UniRef50_B5IGN2 CRISPR-associated helicase Cas3 domain protein n=1 Tax=Aciduliprofundum boonei T469 RepID=B5IGN2_9EURY Length = 728 Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats. Identities = 169/834 (20%), Positives = 276/834 (33%), Gaps = 148/834 (17%) Query: 12 GKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFI 71 K++ T L H + V + V + R Sbjct: 6 AKTNPIQT-------LEEHTIATIDVCRNIAETLDVQTKIYRRAL------------LAC 46 Query: 72 ALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQS 131 ALHD+GK FQ + ++H A + E+ Sbjct: 47 ALHDVGKATENFQKHIRGEKI------------------SYSHALAS---LPISMIIERE 85 Query: 132 LGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAR 191 L + +E F +V HH + + P Sbjct: 86 L--------IKANVFEEPFIVSTSVVSHHAPLTSRVFDIYKEEKPPKYYVDEILSFLDVI 137 Query: 192 EEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDIN 251 I L I + L T++ F ++A + Sbjct: 138 SSKIGDAYNLREIAEKYKSMWINKNPYLYLNQVI---------RTSSHFRKLKNAIWEYA 188 Query: 252 ALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTV 311 ++ AS+ + ++S + + R+ Q + L + Sbjct: 189 TVKALLNSADWIASQNKKEVLVLSKTINEYVKQFMKKQSFVLRKFQEDIQDLKDD---IL 245 Query: 312 IEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLI 371 ++APTG+GKTE L + + VI+ LPTQAT+NAM R+ +F + Sbjct: 246 LKAPTGTGKTEALLLW-------SKNNRVIYLLPTQATSNAMWNRLR----RMFGDYAVG 294 Query: 372 LAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSN-KKVFLGQIGVCTIDQVLIS 430 + HG ++ E ++ A + W S+ VF+ I V T+DQ L++ Sbjct: 295 ITHGRAQL--------IIRREESLKDNAESENQSWHSKVLFSSVFMRPITVATLDQYLLA 346 Query: 431 VLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQ 490 L +H + S +I+DEVHAYD Y GLL + +K + L SAT P Sbjct: 347 ALHGRHWENKIFYTSNSDMIIDEVHAYDPYALGLLISTVKLFP--PKRLALASATFPKPL 404 Query: 491 KQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADM 550 L G + R ++ E + Sbjct: 405 VSLFLQELGRFAEVNAEKEL----------------------WERRRLKVRLEDQNIF-- 440 Query: 551 LPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRR 610 + ++ ++ A +G + +I N V AQ Y+ + L H+RF DR Sbjct: 441 ----SAIDDIVKEAKSGKNILVILNTVANAQKFYREI-----EYPKKMLLHSRFVFRDRE 491 Query: 611 EKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHH 670 +KE ++ NFG GK G ILVATQVVE SLD+ FD L T+ P D L QR GR++R Sbjct: 492 KKEK-MLENFG-YGKHEKGLILVATQVVEVSLDISFDTLYTEIAPVDALVQRFGRVNRTG 549 Query: 671 RKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQW 730 K + YG + ++ + + + + + Sbjct: 550 EKEIASVRIFL----------KYGDKSALVYGRDILDFSANLLYAQLSETP-TESDFLKI 598 Query: 731 LDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYS--LQDNDETILAVTR 788 D +Y++ +KF++ E + + + Y+ L D D VTR Sbjct: 599 NDFLYEEI---------MNAEKFKNLYEEGKQRVNEFYDILGPYTIDLSDIDMLSKFVTR 649 Query: 789 DGEMSLP-LLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSF 841 + ++P L Q +L L V VP W + Sbjct: 650 KTDYITEWVIPID--------LWNQEGINLFERGFKWMLPELMVPVPVWWLKEV 695 >UniRef50_B7GIV6 CRISPR-associated protein Cas3 n=3 Tax=Bacillaceae RepID=B7GIV6_ANOFW Length = 726 Score = 286 bits (731), Expect = 3e-75, Method: Composition-based stats. Identities = 136/801 (16%), Positives = 252/801 (31%), Gaps = 129/801 (16%) Query: 52 FCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRK 111 + L +++ L + HD+GK + FQ K ++ + T Sbjct: 32 YSNKFTLMDEKMWKLLEIAVQYHDVGKANTVFQNKIRQAIRESMLETDI--------ETD 83 Query: 112 FNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDK 171 H + L + + V HH Sbjct: 84 VPHNYLSVGCIPLKQLDLTKEEE---------------RLLIHGVGYHH----------- 117 Query: 172 SRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWL 231 R ++P + +++ + E + L D L Sbjct: 118 EREQLPEKEMIRQVLENDIKKQLPQLSEHMRLPMTEKFSYRFV--------------DRL 163 Query: 232 GSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDN-G 290 N + +++ + R A+ K Y V+ + G Sbjct: 164 -----LNRYTYHDGEEFWKYVMIKGLLHRLDHAASAHIDVESDVEKSIYINVNEYMKKQG 218 Query: 291 YQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATA 350 + LQ + + A TG GKTE AL + D F LP + + Sbjct: 219 FHKNDLQQFAEQHHD--KHVIAIAQTGMGKTEAALLWIQH-------DKAFFTLPLRVSI 269 Query: 351 NAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQS 410 NA+ R++ + L H S + +EE W + Q Sbjct: 270 NAIYDRIKEKM----GYDAVGLLHSTSVHYLV------------DKEENWEELKQQSEHY 313 Query: 411 NKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLK 470 KK+ L TIDQ+L K + + +++DE+ AY+ + +L L+ Sbjct: 314 AKKLLL-----TTIDQILKFPFYYKGFEKELSAMANAKVVIDEIQAYEPRIAAMLIKSLE 368 Query: 471 AQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAH 530 VGG ++++ATLP ++L R V + + Sbjct: 369 MIHRVGGKFMIMTATLPTLYLEELKQ--------------------RNVINDDQIAIEEF 408 Query: 531 PEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKEL 590 + R I+ + + ++ QV +I N V A Y + + Sbjct: 409 IDTSVNRHRIRLRSEGI------EEAIGEVLELGETS-QVLVIVNTVRQAMSLYDKFLDC 461 Query: 591 NNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLI 650 +TQV I L H++FT DR+ E + + N I + TQ+VE S+D+DFD+L Sbjct: 462 -DTQVPIYLLHSQFTQEDRQLLEKHIKQF----NEDNERGIWITTQLVEASIDIDFDYLF 516 Query: 651 TQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQ 710 T+ D LFQR GR +R I + G R N ++ + Sbjct: 517 TEMSTLDSLFQRFGRCYRKRELDHDNC----NIHIFTENISGIPR----VYNEHLVNESI 568 Query: 711 QHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQW 770 + +E + + A + + +YD ++ ++ D + + + Sbjct: 569 RLLEPYDH-QIVDERAKVEMVKQLYDRKQLKGTSFLKEFEDALYMFDN---LDPYGMDKR 624 Query: 771 AEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNR 830 + L+D I +TR + L + ++ ++ + + Sbjct: 625 KAQQKLRDIQ-NIQIITRQMYDQIEHLFERYKEEKEWKKRLKLRMEIEKKTVSVQRYIAE 683 Query: 831 VNVPFTWKRSFSEVVDEDGLL 851 V + F + + Sbjct: 684 KYVSERLPKPFDHIYIAEVEY 704 >UniRef50_B5GV92 Crispr-associated helicase cas3 n=1 Tax=Streptomyces clavuligerus ATCC 27064 RepID=B5GV92_STRCL Length = 838 Score = 286 bits (731), Expect = 3e-75, Method: Composition-based stats. Identities = 145/846 (17%), Positives = 257/846 (30%), Gaps = 118/846 (13%) Query: 12 GKSSKSLTKGNDIHLLIYHCLDV-AAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFF 70 KS+ + + L H V AAV + + + + + Sbjct: 51 AKSTPAEDRER----LTTHSRTVHAAVG--LIEDRIANAGVLADSPA-----FWSQVRRA 99 Query: 71 IALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQ 130 LHD GK FQ + + H L + + + Sbjct: 100 ALLHDAGKIAEGFQRQVEPRGIP----------------WGERHEVLSLAYADLLAG--- 140 Query: 131 SLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQA 190 AA + V HH + + + + + ++A Sbjct: 141 ----------AAAWSEDDLTMVATLVATHHRALHNDGGTGHGGKPALSRIYNKETDWEEA 190 Query: 191 REEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLAD---------WLGSWTTTNTFL 241 + + +E + P + + + GF ++ D L Sbjct: 191 ---FGTSVEDVDGRPVVQVPRFLHRELLAWFCGFLAV-DPPSTRPGDPSLAQRARHLLQR 246 Query: 242 FNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVD 301 + + R Q A + + SG P Sbjct: 247 LLDTWHHPVRPHRGLLAVLAQGALTLADRSGSAHIGLQTHMPLPYDYLARLPYHPHSHQR 306 Query: 302 ALPVAPGLTVIEAPTGSGKTETALAYAW-KLIDQQIADSVIFALPTQATANAMLTRMEAS 360 G + APTGSGKTE LA+A ++ V++ LP +A+ NA+ R+ Sbjct: 307 QAAETLGHLTLVAPTGSGKTEAGLAWAATQIGTMPGRPRVVWTLPYRASLNAIRRRLSED 366 Query: 361 ASHLFSS--PNLILAHGNSRFNHLFQSIKSR--AITEQGQEEAWVQCCQWLSQSNKKVFL 416 + ++ L HG L + A ++F Sbjct: 367 LIPVPGERKADIGLLHGTVAQTLLADGLDDDCPGREPNTPPTADQARKARAQAGAMRLFT 426 Query: 417 GQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVG 476 ++ V T Q+L + L V ++DE+HAY+ G L A ++ +G Sbjct: 427 QRVRVATPHQLLSGAIAGPAYSSVLLEQANCVFVLDELHAYEPRTFGRLCAAMRLWERLG 486 Query: 477 GSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPP 536 +LSATL + +E + P+ R G+ ++LP Sbjct: 487 SRFAVLSATLAEVMIR-----------IIEESVEQPVTVHRSPEGSGPVRHRLTLDELP- 534 Query: 537 RFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKE-----LN 591 + ++R+ N G V + N V AQ + +L + Sbjct: 535 --------------IDAPESVQRIRDWLNEGHSVLAVVNTVARAQELFGQLADDARAARP 580 Query: 592 NTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRN---VGRILVATQVVEQSLDVDFDW 648 L H+RF DR E ++ + + G ++VATQ VE SL +DFD Sbjct: 581 GDPHAALLLHSRFRNGDRDTIERALLRRHPERRPGDGALRGGLVVATQAVEVSLQLDFDR 640 Query: 649 LITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWR 708 + P + + QR GR++R + DG + M Sbjct: 641 AAVECAPVEAVAQRAGRVNRRGLHPDGPV----EFRVHRVDGPR-------PYDPDAMDA 689 Query: 709 TQQHIEEL--NGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARK 766 + L +GA+ + L Y EW G E A + A + Sbjct: 690 AWAALRGLVADGATALSEQDIDELLRRAYA------TEW---GKGWEEQARAARDAFAAR 740 Query: 767 VLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEAL 826 L + + + D E ++ + S +L + + L G+ + L + L Sbjct: 741 FLTFTDPFH--DRSEFARELS-EAFDSTEVLHHDDAEEYRALTRGKAGDPLLASRLLIPL 797 Query: 827 ALNRVN 832 L ++ Sbjct: 798 RLGQLR 803 >UniRef50_A8L914 CRISPR-associated helicase Cas3 n=5 Tax=Actinomycetales RepID=A8L914_FRASN Length = 811 Score = 285 bits (729), Expect = 5e-75, Method: Composition-based stats. Identities = 152/841 (18%), Positives = 261/841 (31%), Gaps = 130/841 (15%) Query: 22 NDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDI 81 LL H V A ++ + ++ R W+ LHD GK Sbjct: 7 GRAELLTEHSAAVRDAARRVAERIGP------AGPIAAEPRFWTWVEQAALLHDAGKVAE 60 Query: 82 RFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDA 141 FQ + H L + N + Sbjct: 61 GFQRQVR----------------PRGTVWGERHEILSLAYVNLLIGGPAEQDRLMAAAGV 104 Query: 142 APHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEAL 201 A H V+G HG L + + WE A + + + E + Sbjct: 105 AFHHRSLT------VSGGHGTGLAASYPQNADWERRFGRDPDAPRGARIQVTPPRHRELI 158 Query: 202 FLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQ 261 L +PPD L ++ + A R Sbjct: 159 AWFTGELGSAPLPPDGRKLWEH-----------ARELFLATHDTWIDGVPANRGLLAVLL 207 Query: 262 QDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKT 321 Q A + + SG ++ + ++ Q A + ++ APTGSGKT Sbjct: 208 QGAVTLADHSG-SAHVPLQRHMPLPRGFLHRLEQPYGHQRAAAASGSHLILVAPTGSGKT 266 Query: 322 ETALAYA-WKLIDQQIADSVIFALPTQATANAMLTRMEASASH----------------- 363 E LA+A +L + +++ LP +A+ +A R Sbjct: 267 EAGLAWASAQLENMPGEPRLVWVLPYRASIDAAADRFTRDLDPPSDPCPEPGESSEYPST 326 Query: 364 -LFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVC 422 + SP++ + H + ++ +RA+ + ++F ++ V Sbjct: 327 VVARSPDIGVLHATAA-----ATLLTRAVADDCPPSPASARKARARAQAMRLFAQRVRVA 381 Query: 423 TIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILL 482 T Q+L + + L ++ ++DE+HAYD G + A L +G + +L Sbjct: 382 TPHQLLRAAIAGPRYSSVLLEQANALFVLDELHAYDPETFGRICAALGMWDHLGSRIAVL 441 Query: 483 SATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQP 542 SATL + D+ G H D V + R + Sbjct: 442 SATLAKPMIDLVEDSLGGHVDLVRAPAG--------------------TAPDRHRLVLDE 481 Query: 543 EPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRL----KELNNTQVD-I 597 +PI D L ++ G V ++ N V VAQ +Q L +E D Sbjct: 482 QPITAPDNLRAISRW------MTEGHSVLVVANTVRVAQQLFQALAPAAREAWPDDPDAA 535 Query: 598 DLFHARFTLNDRREKENRVISNFGKNGKRN----VGRILVATQVVEQSLDVDFDWLITQH 653 L H+RF DR E+R+ + + + G ++V+TQV+E SL +DFD +++ Sbjct: 536 ILLHSRFKGRDRARIEHRITTRHPERSAGDPALRQGGLVVSTQVLEVSLCLDFDRGVSEL 595 Query: 654 CPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHI 713 P + + QR GR++R R + + + + + Sbjct: 596 APIEAVAQRAGRVNRRGRHPDGPV-----------EFRVHRTDSALPYQEESLDAAWAAM 644 Query: 714 E-ELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGM--------------DKFESAEC 758 GA WLD +Y +W FE Sbjct: 645 RHTAAGAQAISEQTVEDWLDHVYS--TPWGEQWAATARQARDAFAASFLTFHRPFEDRSE 702 Query: 759 EKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLP---LLPYVQTSSGKQLLDGQVYE 815 R + + + LA T DG+ L L+P + DG + Sbjct: 703 FARSLDENFDTVQVLHRDDEAEYRTLADTDDGDPLLAEGLLIPLRWPQLARLRRDGHAAD 762 Query: 816 D 816 + Sbjct: 763 N 763 >UniRef50_C9RCY3 CRISPR-associated helicase Cas3 n=2 Tax=Thermoanaerobacteraceae RepID=C9RCY3_AMMDK Length = 821 Score = 284 bits (727), Expect = 7e-75, Method: Composition-based stats. Identities = 146/929 (15%), Positives = 272/929 (29%), Gaps = 171/929 (18%) Query: 9 HYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLL 68 ++ + + + L H VAA + + QN L Sbjct: 2 AFFAHCDREGERIKRRYRLDAHLALVAAESYTSLARLPRYQNLLP-------------LA 48 Query: 69 FFIAL-HDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSL 127 + L HD GK+ FQ + H W + Sbjct: 49 ATVGLAHDFGKYTSYFQDYLLTQRINPYKE----------------HAFISGLWATYLAA 92 Query: 128 SEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQD 187 + P E ++ AV HH + + D+ + + S Sbjct: 93 RQG------------AGPLEQLAAFM-AVLWHHRDL-DNLDRYLASRREMEDITSLDPDK 138 Query: 188 KQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSL----------ADW------- 230 + E +E L + + + LA + DW Sbjct: 139 YRRLEVVEKQVEDLRQNIEKVGAS--LASAARHLARLLTRRGLTPPPFLTQDWCQCLEEF 196 Query: 231 LGSWTTT------NTFLFNEDAPSDINAL-----------RTYFQDRQQDASRVLELSGL 273 LGSW + F PS + + EL Sbjct: 197 LGSWQEVYISLYRHWRKFERQEPSLSPYFNVVLLFSALIDADKRHSARVREVKRPELPSN 256 Query: 274 VSNKRCYEGVHALLDNGYQP------RQLQVLVDALPVAPGLTVIEAPTGSGKTETALAY 327 + + G R + P++ + APTGSGKT T + Sbjct: 257 LVYIYKERKFAGGVPFGINALRGKIFRHAAERMACAPLSQRFFTLTAPTGSGKTLTVINA 316 Query: 328 AWKLIDQ-----QIADSVIFALPTQATANAMLTRM----EASASHLFSSPNLIL--AHGN 376 A L + + +I+ALP + + + E + S+P++ L H Sbjct: 317 ALILRRRLQEAYGFSPRIIYALPFTSIIDQTYQVLYELMEETLPGFASAPSVYLLKHHHL 376 Query: 377 SRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKH 436 + ++ E + + + ++ V T Q+L + + ++ Sbjct: 377 AEISYK-------------DPEDEDPRRFDEAMLLIESWQSEVVVTTFVQLLHTFIGYRN 423 Query: 437 RFIRGL-GIGRSVLIVDEVHAYDTYMNGLLEAVLKAQAD-VGGSVILLSATLPMKQKQKL 494 R ++ +GRS++I+DEV L+ VLK A+ + +IL++AT P + Sbjct: 424 RMLKKFCHLGRSIIIMDEVQNIPVEYWPLVTEVLKRAAEELDLRLILMTATRPEWFE--- 480 Query: 495 LDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDL 554 + P R R LL P Q Sbjct: 481 -------PGEALELAGEPEDIERYFKMLDRVRLLVEPGQYRV-----------------A 516 Query: 555 TMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKEN 614 E + ++ N + + Y LK+L + +R ++ Sbjct: 517 EAAELFARRYDPSRSHLVVLNTIRNSVDFYHYLKDLLPEGTPLYYLSTNIVPAEREKRIE 576 Query: 615 RVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYR 674 + + R +LV+TQVVE +D+DFD P D + Q GR +R+ ++ + Sbjct: 577 ALRTAL----HRGEKPVLVSTQVVEAGVDLDFDVAWRDIGPVDAVVQVAGRCNRNFKRDK 632 Query: 675 PAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSI 734 V + L D +G+ +Y + + + +G F + +++ Sbjct: 633 GD-----VYLLNLVDEQGHFPAVRVYGAIHIKGAREF----FSGRPEFPEAEFHSLVENF 683 Query: 735 YDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDET-ILAVTRDGEMS 793 + + + A E RFK + + L + I + Sbjct: 684 FSFVRARKDP---SASGTILKAMKELRFKGDGEEKGVAGFQLIKDLPNHIEVFVALDSKA 740 Query: 794 LPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWL 853 + Q +E + + ++VP RS + VD L Sbjct: 741 EEVWEAYQQEVVNAPDRRSRWEAF--YRIKRDFSRYIISVP---VRSLAGKVDTSKAL-- 793 Query: 854 EGKQNLDGWVWQGNSIVITYTGDEGMTRV 882 + ++ + Y + G RV Sbjct: 794 ---PYIPPYLVEEL-----YDPETGFKRV 814 >UniRef50_A6UNS0 CRISPR-associated helicase Cas3 n=2 Tax=cellular organisms RepID=A6UNS0_METVS Length = 765 Score = 284 bits (726), Expect = 1e-74, Method: Composition-based stats. Identities = 124/854 (14%), Positives = 262/854 (30%), Gaps = 167/854 (19%) Query: 25 HL---LIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDI 81 H L H V +A V + + L HD GK Sbjct: 10 HPDQTLNDHLTGVRDIALNLHKNHNVNK------------DLTDVLEIICMAHDFGKATS 57 Query: 82 RFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDA 141 FQ + + + +HG + + F Sbjct: 58 FFQDRLK----------------TGNKSKLTDHGEISACFAYWLLPELWKIPGFL----- 96 Query: 142 APHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDK---------QARE 192 V HHG + ++ D+ ++ A ++ + E Sbjct: 97 -------------IVKRHHGSMKNANDEILLNIDILKKQAKNILENNFEEVNLIYSEMLE 143 Query: 193 EWISVLEALFLTPAGLSINDIPPDCSSLLAG------FCSLADWLGS---WTTTNTFLFN 243 + L F L+ I ++ ++ S + + N Sbjct: 144 KNSKYLNDFFDFLNSLNERSIKKHFRKEISNIKYDLELFIKIQYIYSILLSADKSQLILN 203 Query: 244 EDAPSDINALRTYFQDRQQDASRV-LELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDA 302 + + Y + ++D + +E G N + + +L+ ++ Sbjct: 204 KAYLPKVTIPSEYVEKYKEDLKKKFVEKIGNFENNMVFNIRNDAF------NELKYELEE 257 Query: 303 LP-VAPGLTVIEAPTGSGKTETALAYAWKLIDQ-----QIADSVIFALPTQATANAMLTR 356 + + I PTG+GKT A+K++++ + +I+ LP + + Sbjct: 258 VDLNNNKIFSINMPTGTGKTMLGYYSAFKILERLKNEQNLNSQIIYCLPYMSIIDQNYAE 317 Query: 357 MEASAS----HLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNK 412 + + L+ H + + ++ ++ Sbjct: 318 LYKLLEYNLNRHPNDEELLKFHSMTEIKY-------------------SDFKEYDARFCF 358 Query: 413 KVFLGQIGVCTIDQVLISVLPVKHRFI--RGLGIGRSVLIVDEVHAYDTYMNGLLEAVLK 470 + + ++ T Q ++ + R + SV+I+DEV A +T L++ L+ Sbjct: 359 ENWQSKVVTTTFVQFFNTIFKSGKNSVMHRFHTLSNSVIILDEVQAIETKYFPLIKQFLE 418 Query: 471 AQ-ADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLA 529 + +IL++AT+P LLDTY + + NN Y Sbjct: 419 ILSKNYNVYIILMTATMP-----ILLDTY----ELIPNNEKY------------------ 451 Query: 530 HPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKE 589 + L I ++ +LE+ I N+ ++ N V A+ YQ L + Sbjct: 452 -FKSLNRIKIINNTSKNISLNEYKDILLEKTIK--NSDKSFLIVMNTVKSAKDVYQYLMK 508 Query: 590 LNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWL 649 N + R EK N + K KR ++V+TQ++E +D+D D + Sbjct: 509 ETNRK--CIYLSTEIYPKLRLEKINEIR----KMNKRGEKPVVVSTQLIEAGIDIDMDTV 562 Query: 650 ITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRT 709 D + Q GR +R+ + V + D + +IY ++ T Sbjct: 563 YRDFSTLDSINQTAGRANRNGLGEKGE-----VYIYNIIDDKKRPYCGYIY-PHHLLDCT 616 Query: 710 QQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQ 769 + + E + ++ + N +K K+ Sbjct: 617 KSVLLETEINEKELYEVNNKYFKEV------------QNRSLNEIGENVQKSIKSLDFKT 664 Query: 770 WAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALN 829 + + + L +E + + + + + K+L + + + +L + + AL Sbjct: 665 FRDNFELIKKEEWKKDIFINADNNSDEIL-------KKLENSKDFSNLEIKNLFRALNNY 717 Query: 830 RVNVPFTWKRSFSE 843 R+++ Sbjct: 718 RISINTQKYDKIKN 731 >UniRef50_Q1JFX2 ATP-dependent RNA helicase n=13 Tax=Streptococcus RepID=Q1JFX2_STRPD Length = 802 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 117/869 (13%), Positives = 261/869 (30%), Gaps = 117/869 (13%) Query: 39 DCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIAL-HDIGKFDIRFQYKSAESWLKLNPA 97 + W + + +LF I L HD+GK D FQ K + Sbjct: 20 EHLWHVACSSRQEASIIGQGD-------VLFLIGLYHDLGKADRTFQDKLLNN------- 65 Query: 98 TPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVT 157 R +H AG + ++ Sbjct: 66 ----------PNRHVDHSYAGAKYLYSIIGPRLKNRGV-----DKNERMTFNEMVGYVIS 110 Query: 158 GHHGFIL---HSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIP 214 HHG + D + + + + E+ L D+ Sbjct: 111 AHHGMYDLCYYFDDAEYYGFNKFKNRINRDLDGYHYHEDIKGYALKLEKKLCDYGYKDLR 170 Query: 215 P-------DCSSLLAGFC----SLADWLGSWTTTNTFLFNEDAPSDINALRTY------F 257 + ++ S D+ S +L ++ + Y Sbjct: 171 ELIDKAFDNYQQAMSSLNWQDKSEWDYYQSCM-VRLYLSLLKNADILDTVNAYGLKISPM 229 Query: 258 QDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTG 317 ++ + L+ + + + L+ +V + G+ ++ PTG Sbjct: 230 DKTERSFLKHSYLAAIEQKYASFGQPNNQLNTIRTEIAERVKERGKRDSNGIYRLDLPTG 289 Query: 318 SGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNS 377 +GKT ++ YA+ + + P + + + + ++ H N Sbjct: 290 AGKTNLSMRYAFHQLVHHDKSRFFYITPFLSVLEQNASEIRK----VTGDLGVLEHHSN- 344 Query: 378 RFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHR 437 + +A + +E+ + S + Q+ + ++ Q ++ K Sbjct: 345 --------VVKQANEDDDDKESLLSAYLSDS------WDSQVVLTSMVQFFQTLFKTKSA 390 Query: 438 FIRGLG-IGRSVLIVDEVHAYDTYMNGLLEAVLKAQAD-VGGSVILLSATLPMKQKQKLL 495 +R + SV+I+DEV + + L + + +++L +AT P ++ Sbjct: 391 NLRRFSSLINSVVILDEVQSLSIEVTTLFNLTMNFLNKVMDTTIVLCTATQPAYDSSEID 450 Query: 496 DT--YGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPD 553 YG + + + +L Q+ R ++ D Sbjct: 451 HRICYGGNLGELA----------------EIVELTIEERQIFSRTELRK----FDDSDQK 490 Query: 554 LTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKE 613 + + + + V I N CY LK++ T + R + Sbjct: 491 VHLTDVINLILGEENSVLAIFNTKKTVHNCYTMLKDM--TDRPVYQLSTNMCAQHRLDLI 548 Query: 614 NRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKY 673 ++ + + N+ I ++TQ++E +DVDF +I + D + Q GR +R ++ Sbjct: 549 AKIKTEL----QNNIPIICISTQLIEAGVDVDFHRVIRSYSGIDSIVQAAGRCNREGKRD 604 Query: 674 RPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDS 733 + L + E R I + T+ + ++ G+ + R + + Sbjct: 605 KGQV----TLVNLTNEEENISRLTEIKAKK---EATESILHKI-GSPIDISTLNRDFFEY 656 Query: 734 IYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMS 793 Y + + + + + ++ K + + + +T A Sbjct: 657 YYANNQGLMDYPLEDNLSIYDYLSLNIYQTTNKKFKGKLKQAF----KTAGAKMNLINND 712 Query: 794 LPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWL 853 + + + K+L E+L A + + F+ V E+ L+ Sbjct: 713 MIGILVSYGEAEKKL---AYLEELGMSHFLSAEDYQTIKSLLKELQPFTVNVRENDPLFE 769 Query: 854 EGKQNLDGWVWQGNSIVITYTGDEGMTRV 882 K L+G + Y + G+ Sbjct: 770 TTKSYLNGQIL--VLTSEYYDTERGVKYD 796 >UniRef50_A8F3N9 CRISPR-associated helicase Cas3 n=1 Tax=Thermotoga lettingae TMO RepID=A8F3N9_THELT Length = 744 Score = 283 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 119/846 (14%), Positives = 250/846 (29%), Gaps = 127/846 (15%) Query: 20 KGNDIHL---LIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDI 76 G H L+ H V A + N ++++ + HD Sbjct: 3 DGLKSHPERLLLDHINGVKKRALEKANSIKWN------NFGITEKDAIKLIEICALCHDF 56 Query: 77 GKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFF 136 K FQ S++ +H + + + Sbjct: 57 AKASSGFQKYI----------------TSSKKGVHVSHAPLSSIITYHIAKNTGFEPKYA 100 Query: 137 SFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWIS 196 SF V HH + K +L + Q +E+I Sbjct: 101 SFA-------------YFVVRCHH-------ESMKDFQAFGENLEALEKQMSSIPKEFID 140 Query: 197 VLEALFLTPAGLSINDIPPDCSSLLAGF-----CSLADWLGSWTTTNTFLFNEDAPSDIN 251 +E+ T I++I +A SL D+L T + + ++ + ++ Sbjct: 141 WVESKLNTQVTPKISEIYGKLEKDVAKLNFFRPFSLKDYLFVHTLLSILVSSDHEDAALH 200 Query: 252 ALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTV 311 + R + + + + Y + + Sbjct: 201 DTPLILKTRLTLENLRKYMHAIPEDNPLYSLRKEFHIDL-------DNSLKYLDDSKIYS 253 Query: 312 IEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASH-LFSSPNL 370 I APTG GKT L A L D+ + +++ALP + + + F + + Sbjct: 254 ITAPTGLGKTLANLKVALSLSDESL---IVYALPFINIIDQTVETFQKIMQDTEFDASTI 310 Query: 371 ILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLIS 430 + H + + E + + + + + + QI V T + S Sbjct: 311 LPYHHLANPKY----------------EEDIYGEKAIQKVLIESWHSQIVVTTFVGLFES 354 Query: 431 VLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQ 490 +L K + + +I+DEV + L +L ++ G +I +AT PM Sbjct: 355 LLTSKRVPF-FYKLLNATIILDEVQSIPHKYWNPLADILSCLSEFGTKIIFSTATQPMII 413 Query: 491 KQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADM 550 LIN + R + E P F Q E Sbjct: 414 -----------------TKTRELINKNYNSKLNRTRIHYCGEIDYPSFMKQVE------- 449 Query: 551 LPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRR 610 E ++ ++ N + ++ + L+ + + L + R Sbjct: 450 -------EEANKCLEKNQRLLVVVNTIRQSKELFNHLRSTIDISKLVYL-SSNVIPKQRL 501 Query: 611 EKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHH 670 E+ + + +N G I ++TQV+E +D+ F+ +I P D + Q GR +R+ Sbjct: 502 ERVSGLKKL------KNQGIICISTQVIEAGVDLSFNKIIRDEGPIDSVIQVAGRCNRNF 555 Query: 671 RKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAY-RQ 729 ++ ++Y + ++ T++ + + Sbjct: 556 ETP----ISSAHIYRVIDKERNRSFSSYVY-DHFLLDMTRELLSSKKEFEEKEFPEIVSR 610 Query: 730 WLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRD 789 + + + + D + + + E +FK + ++ + DE + + Sbjct: 611 YFNMVKERGNTDREN-LTEQLRLLKFEEISSKFKLIE-KRYDTVPVFIEYDEYAQFLRKK 668 Query: 790 GEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDG 849 +L K ++ +S L + + F V ++ Sbjct: 669 LNETLN---SKMEKFEKLAQISELIRQMSLYTIDVPLKSEDLRGALLIENGFLVVTKDNL 725 Query: 850 LLWLEG 855 W + Sbjct: 726 NYWYDE 731 >UniRef50_B4VYG3 CRISPR-associated helicase Cas3 domain protein n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VYG3_9CYAN Length = 703 Score = 283 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 117/789 (14%), Positives = 232/789 (29%), Gaps = 171/789 (21%) Query: 15 SKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIA-L 73 S+ + + + H + A+A L Sbjct: 24 SRPPRQDGTVQTVKQHLEETGAIAAAVHP-----------------------LAEIAGKW 60 Query: 74 HDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLG 133 HD+GKFD +Q S + C+ H G + L Sbjct: 61 HDLGKFDPTWQQYLQASM-------------AGNKCKSPGHAIHGAALAWKKGLH----- 102 Query: 134 DFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREE 193 A+ GHH + + D + ++ + + A++E Sbjct: 103 -----------------GVAFAILGHHSGLPNLGGADGIQQKLKGDQ-HWQSIQAIAQKE 144 Query: 194 WISVLEALFLTPAGLSINDIPPDCS-SLLAGFCSLADWLGSWTTTNTFLF--NEDAPSDI 250 F P+ + + D ++ AD + + I Sbjct: 145 LGD---NFFTCPSHHPEHPLTEDLLIRIIFSALVDADRESAARFLGDWDTVTPPTIEQLI 201 Query: 251 NALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLT 310 + T++ Q+A+ N + + A + PG Sbjct: 202 SQFETHYHHLIQNAADT-------------------PINAIRRDIYRHCQAAATLKPGFF 242 Query: 311 VIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNL 370 + PTG GKT + +A+A +I+ P + FS + Sbjct: 243 RLTTPTGGGKTLSVMAFALHHAQNYQQKRIIYCPPFTSIIEQA----AQVYRESFSENAV 298 Query: 371 ILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLIS 430 + H F+ + Q + + I V T Q+ S Sbjct: 299 LEHHSGVVFDTHTDELHHY-------------------QFAAQRWDYPIIVSTTVQLFES 339 Query: 431 VLPVKHRFIRG-LGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQA-DVGGSVILLSATLPM 488 + R I SV+I+DEV A T + ++L+ + SV+ SAT P Sbjct: 340 LFSRHPSQCRKVHRITNSVIILDEVQALPTKYLKPIMSMLRGLVDNWNCSVVFCSATQP- 398 Query: 489 KQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLA 548 + D E PL QR +++ + + Sbjct: 399 ---------WYGILDLPEIRDIVPL--------NQRQSHAKTLQRVEYHYQ--------S 433 Query: 549 DMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLND 608 +L+ + + ++ + A+ ++ L EL NT Sbjct: 434 QAWDWHDLLQDIRQRSL--KNALVVVSAKIDARQGFKVLSELGNT----FHLSTNMYAAH 487 Query: 609 RREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHR 668 RR N+V +++ L++TQ++E +D+DF D + Q GR++R Sbjct: 488 RRRVLNQVRDRLN----QDLPVYLISTQLIEAGVDIDFTAGYRAIAGLDSIIQTAGRVNR 543 Query: 669 HHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYR 728 +H+ + TI +G+ + + + T+ ++ G SL + + Sbjct: 544 NHKSNHA------ILTIFELKNQGFPQ-----QDRDKIQITRNLLK--AGQSLHDEASCQ 590 Query: 729 QWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTR 788 + ++ N + E +KR + + + + D + + Sbjct: 591 DYF-----------KSFLANPAVNLDQQEIQKRREGFMFKDIDTHFQMIE-DNKVNVIIP 638 Query: 789 DGEMSLPLL 797 + + L+ Sbjct: 639 LEDTAKQLI 647 >UniRef50_B1LAM3 CRISPR-associated HD domain protein n=2 Tax=Thermotoga RepID=B1LAM3_THESQ Length = 721 Score = 282 bits (722), Expect = 3e-74, Method: Composition-based stats. Identities = 134/864 (15%), Positives = 272/864 (31%), Gaps = 167/864 (19%) Query: 25 HL---LIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDI 81 H LI H V ++ L ++ ++ ++ ++ HDIGK Sbjct: 7 HPDRRLIDHLEGVK---KRSMEKFRSLDLSWEELFGYDERILEEFVSLLSESHDIGKSTT 63 Query: 82 RFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDA 141 FQ + H + F S + F F Sbjct: 64 YFQKHLNGERV---------------ERSLSAHAFSSAVAFFHRSKNLPDKLRIFGF--- 105 Query: 142 APHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEAL 201 E + HHG + D D++ E+ S + Sbjct: 106 ------------EIIRRHHGDFRNFLD---------------IEIDEKVLEKHFSAIPED 138 Query: 202 FL---TPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQ 258 FL L +++ + L++ F L S + SD + F+ Sbjct: 139 FLRRYDLHDLKLSETMKEMKKLISKFSILGKKELSDYFLIHLFMSVLVSSDREDV--VFK 196 Query: 259 DRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGS 318 D + E ++S + + + + R +++ P + I APTG Sbjct: 197 DEPLPSLPSYEKEKILSYRENLGRKNQ--IDSLRWRFQDEILNFKPERGRIYSITAPTGI 254 Query: 319 GKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSR 378 GKT L +A L D+ +I+ALP + +++ L H + Sbjct: 255 GKTLANLLFAGHLADEDTI--IIYALPFINIIEQTVDKIKEIFETEDPFFVLPFHHLANP 312 Query: 379 FNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRF 438 + ++ ++ V T +L S++ + + Sbjct: 313 VYEEADKYED---------------------LLMNLWHSRVIVTTFVSLLESLITFR-KI 350 Query: 439 IRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTY 498 ++VLI+DEV A +E ++ + +G +V+L +AT P K+ Sbjct: 351 PFFYKFPKAVLILDEVQAIPHEYWTPVEKTVEFLSKMGTTVLLSTATKPALLKEA----- 405 Query: 499 GLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLE 558 + V N + Y ++ + + + E Sbjct: 406 ---QEVVSNKNVYF-------------------------TALNRTVLKVEKEMSFEEYKE 437 Query: 559 RMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVIS 618 +I G + +I N + A+ Y ++ + T +R R E +++ Sbjct: 438 FVIETLKDGKRTLIITNTIREAEEIYDAVESMGKTCF----LSSRVIPKHRLEIVSKI-- 491 Query: 619 NFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGF 678 N + V+TQVVE +D+ F+ +I P D + Q GR +RH + Sbjct: 492 --------NEYDLCVSTQVVEAGVDISFERVIRDIAPVDSIVQAAGRCNRHFELEKGEVI 543 Query: 679 EIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDA 738 +PV + + ++Y + + T+ + L + + ++ +D Sbjct: 544 VVPV----KDERKNTLFSSYVYGS----FLTETSMNVLKNYKVLEESEFFTLVEDFFDYV 595 Query: 739 EMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLP 798 +M E+ +K E+SL + + T+ + E + + Sbjct: 596 KMYGNPDKKGIGKALENLNFKK----------IGEFSLIEPEPTVPFIVLIDEEAQRV-- 643 Query: 799 YVQTSSGKQLLDGQVYEDLSH--EQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWLEGK 856 ++ DG+ + ++ + L+ V+ SF + +++ + Sbjct: 644 ---FEEFAEIFDGKKSRENFSLVKRLFRELSPYIVSARIKKDLSFPHTIAGMVVIY---R 697 Query: 857 QNLDGWVWQGNSIVITYTGDEGMT 880 LD W Y +G+ Sbjct: 698 NVLDKW----------YHPVKGLR 711 >UniRef50_C1XVN4 Uncharacterized domain HDIG-containing protein n=2 Tax=Meiothermus RepID=C1XVN4_9DEIN Length = 1084 Score = 282 bits (722), Expect = 3e-74, Method: Composition-based stats. Identities = 149/886 (16%), Positives = 273/886 (30%), Gaps = 170/886 (19%) Query: 10 YWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLF 69 YW + K T L H A VA L + S+Q Sbjct: 343 YWAHTHKDPT---RWQTLQEH---AAQVAR--------LAAEKAQPFGDSEQ------AD 382 Query: 70 FIA-LHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLS 128 LHD+GK+ FQ + L +H +AG + + Sbjct: 383 LAGKLHDLGKYGDLFQRRLEGKEKGL------------------DHWSAGAHLALFEY-- 422 Query: 129 EQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDK 188 A+ GHH + ++ + + + + Sbjct: 423 -------------------RAPALALAIQGHHIGLQSGAKENLMAMRLREDGQGFPPELR 463 Query: 189 --QAREEWISVLEA---LFLTPAGLSINDIPPDCS-----SLLAGFCSLADWLGSWTTTN 238 + R E + L L P + +P + +L AD+L + Sbjct: 464 LSETRLEVLKSRMQSDGLELPPPSQAPIRLPQSAAAMLETRMLFSALVDADFLDTEQHMR 523 Query: 239 TFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQV 298 P + A + + +++ G+ + Q Sbjct: 524 GPEVRRPEPPPLQAREA-LERLEARLAQLAADPGIPPQ-----------IRALRQTVAQA 571 Query: 299 LVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIA-DSVIFALPTQATANAMLTRM 357 + L + APTGSGKT L +A K Q ++ LP + + + Sbjct: 572 CA-EAALEGRLFTLTAPTGSGKTLAMLRFALKRAAQDPRIRRIVVVLPYLSILDQTVQIY 630 Query: 358 EASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLG 417 + F S ++ H + + + I E+ + + + Sbjct: 631 RELFAD-FGSHYILEDHSLAYRPLRKELSDEQDILERE------------RRLLSENWEA 677 Query: 418 QIGVCTIDQVLISVLPVKHRFIR-GLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQA--D 474 I + T Q+L S+ + R + SVL+ DEV T + L A Sbjct: 678 PIILTTHVQLLESLHASRPGACRKLHNLAGSVLLFDEVQTLPTPLAVPTLKTLAHLASDR 737 Query: 475 VGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQL 534 G V+ +AT P ++ + + G Q +++ +P L Sbjct: 738 YGSVVVFATATQPAF------------------DTLHAKVQENEPQGWQPREIVPNPAAL 779 Query: 535 PPRFSIQPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQ 594 Q + + + L + T + A +Q ++ NL AQ +Q+ +E Sbjct: 780 FG----QSQRVAVEWWLKNPTPNPALTTLLAADSQALVVLNLKRQAQALFQQAQERGLEG 835 Query: 595 VDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHC 654 + R+E + + R L+ATQVVE +++DF Sbjct: 836 --LYHLSTALCPAHRKEVLREIKARL----DRREPCRLIATQVVEAGVELDFPIGYRALG 889 Query: 655 PADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIE 714 P + + Q GR++RH ++ + LP+ EGY + Y+ + Q Sbjct: 890 PLEAIAQTAGRVNRHGLRWEG------RLVVFLPEDEGYP--DRAYAQAAKLTLALQA-- 939 Query: 715 ELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEY 774 G P +R++ S+Y ++ +PE E K + + A Y Sbjct: 940 --EGGLELTPATFRRYYQSLYGIQQVSDPE-------------IEGHIKTQNYAELARRY 984 Query: 775 SLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVP 834 + + + V E +L L+ ++ + + D H + + +P Sbjct: 985 RIIET-PAVNVVVPYNEEALALM--------QEAREHGIAADWLHRARPYTVP---FFLP 1032 Query: 835 FTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMT 880 +F E V G+QN + W + Y G T Sbjct: 1033 HGGPPAFLEPV-----FLRYGRQNSEVPDWFLSPDPACYHALLGFT 1073 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.311 0.116 0.313 Lambda K H 0.267 0.0357 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,231,177,624 Number of Sequences: 3077464 Number of extensions: 160478811 Number of successful extensions: 668788 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 1827 Number of HSP's successfully gapped in prelim test: 8198 Number of HSP's that attempted gapping in prelim test: 637887 Number of HSP's gapped (non-prelim): 21082 length of query: 888 length of database: 1,040,396,356 effective HSP length: 138 effective length of query: 750 effective length of database: 615,706,324 effective search space: 461779743000 effective search space used: 461779743000 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 97 (42.2 bits)