163 c1vmaA_ Probab=97.67   E-value=0.001  Score=39.34  Aligned_columns=137  Identities=17%

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHH
Q ss_conf             79879998088888789999999999854799829998163899999999999999852788619998477520257777
Q batch____       306 APGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQS  385 (888)
Q Consensus       306 ~~~~~ii~aPTGsGKT~aal~~a~~l~~~~~~~rii~~lPt~al~~q~~~r~~~~~~~~~~~~~v~l~h~~~~~~~~~~~  385 (888)
                      .|.++.+..|||+|||..+...|..+..++..-.++-+=++++-+-.+.+.+.+.+.                       
T Consensus        91 ~~~vi~~~Gp~G~GKTTt~aklA~~~~~~g~~v~li~~D~~R~gA~eQL~~~a~~~~-----------------------  147 (294)
T c1vmaA_          91 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVG-----------------------  147 (294)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHT-----------------------
T ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHC-----------------------
T ss_conf             966999980688760248999999999679948999758768647999999997619-----------------------


Q ss_pred             HHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHHHHHCCCCEEECCCCCCC--CHHHHH
Q ss_conf             653123566652023455664323454301498899588999998723773035664102552550650127--878899
Q batch____       386 IKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAY--DTYMNG  463 (888)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~VtT~dqll~~~~~~~~~~~r~~~l~~~vvilDEvh~~--~~~~~~  463 (888)
                                                     .|+.+....+-+..++  +........-...+|++|.+-..  +.....
T Consensus       148 -------------------------------v~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~IlIDTaGr~~~d~~~~~  194 (294)
T c1vmaA_         148 -------------------------------ATVISHSEGADPAAVA--FDAVAHALARNKDVVIIDTAGRLHTKKNLME  194 (294)
T ss_dssp             -------------------------------CEEECCSTTCCHHHHH--HHHHHHHHHTTCSEEEEEECCCCSCHHHHHH
T ss_pred             -------------------------------CEEEECCCCCCHHHHH--HHHHHHHHHCCCCEEEECCCCCCCCCHHHHH
T ss_conf             -------------------------------8289748836989999--9999999977998999818889878579999


Q ss_pred             HHHHHHHHHHH-----CCCCEEEEECCCCHHHHHHHHHHH
Q ss_conf             99999999886-----199899996689989999998630
Q batch____       464 LLEAVLKAQAD-----VGGSVILLSATLPMKQKQKLLDTY  498 (888)
Q Consensus       464 ~l~~~l~~l~~-----~~~~~illSATlp~~~~~~l~~~~  498 (888)
                      .+..+.+....     ..-.++.+|||......+.....+
T Consensus       195 el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~  234 (294)
T c1vmaA_         195 ELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFK  234 (294)
T ss_dssp             HHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHH
T ss_conf             9999999963035668853999811468789999999996