308 c1s3sA_ Probab=93.44   E-value=0.4  Score=23.86  Aligned_columns=104  Identities=20%

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHH
Q ss_conf             79879998088888789999999999854799829998163899999999999999852788619998477520257777
Q batch____       306 APGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQS  385 (888)
Q Consensus       306 ~~~~~ii~aPTGsGKT~aal~~a~~l~~~~~~~rii~~lPt~al~~q~~~r~~~~~~~~~~~~~v~l~h~~~~~~~~~~~  385 (888)
                      .|.-+++..|.|+|||..+=..|..+      ..-++.+-.-.+.+.........++.++                    
T Consensus       215 ~~~~~Ll~Gp~G~GKt~l~~~ia~~~------~~~~~~i~~~~l~~~~~g~~e~~l~~~f--------------------  268 (436)
T c1s3sA_         215 PPRGILLYGPPGTGKTLIARAVANET------GAFFFLINGPEIMSKLAGESESNLRKAF--------------------  268 (436)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHH------TCEEEEEEHHHHHTSCTTHHHHHHHHHH--------------------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHC------CCCEEEEEHHHHCCCCCCHHHHHHHHHH--------------------
T ss_conf             87538986799899789999998744------9958997306870010015888899999--------------------


Q ss_pred             HHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHHHHHCCCCEEECCCCCCC--------
Q ss_conf             653123566652023455664323454301498899588999998723773035664102552550650127--------
Q batch____       386 IKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAY--------  457 (888)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~VtT~dqll~~~~~~~~~~~r~~~l~~~vvilDEvh~~--------  457 (888)
                                                                           ...-....++|++||+|++        
T Consensus       269 -----------------------------------------------------~~a~~~~p~ii~lDeid~l~~~~~~~~  295 (436)
T c1s3sA_         269 -----------------------------------------------------EEAEKNAPAIIFIDELDAIAPKREKTH  295 (436)
T ss_dssp             -----------------------------------------------------HHHHHTCSEEEEEETGGGTCCCSSSCC
T ss_pred             -----------------------------------------------------HHHHHCCCCEEEEHHHHHHHCCCCCCC
T ss_conf             -----------------------------------------------------999750994898400003210257887


Q ss_pred             ---CHHHHHHHHHHHHHHHHCCCCEEEEECCCCH
Q ss_conf             ---8788999999999988619989999668998
Q batch____       458 ---DTYMNGLLEAVLKAQADVGGSVILLSATLPM  488 (888)
Q Consensus       458 ---~~~~~~~l~~~l~~l~~~~~~~illSATlp~  488 (888)
                         .......+...+........-++++|++-|.
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~v~vi~tt~~~~  329 (436)
T c1s3sA_         296 GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPN  329 (436)
T ss_dssp             CTTHHHHHHHHHHHHHHCCGGGCEEEEEEESCGG
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHH
T ss_conf             4588999999986430222469879998448958