142 c1pjrA_ Probab=98.42   E-value=2.4e-06  Score=54.96  Aligned_columns=80  Identities=20%

Q ss_pred             CHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCC--CEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             65888875111479879998088888789999999999854799--8299981638999999999999998527886199
Q batch____       294 RQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIA--DSVIFALPTQATANAMLTRMEASASHLFSSPNLI  371 (888)
Q Consensus       294 ~~~q~~~~~~~~~~~~~ii~aPTGsGKT~aal~~a~~l~~~~~~--~rii~~lPt~al~~q~~~r~~~~~~~~~~~~~v~  371 (888)
                      ++-|..+....  ++.++|.+|-|+|||.+.+..+..++..++.  .+|+++.||...++++.+|+.+.+........+.
T Consensus        13 ~~~Q~~ai~~~--~~~~lV~GppGTGKT~~l~~~i~~ll~~~~~~~~~ILv~s~tn~A~d~~~~ri~~~~~~~~~~~~i~   90 (623)
T c1pjrA_          13 NKEQQEAVRTT--EGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGAAEDVWIS   90 (623)
T ss_dssp             CHHHHHHHHCC--SSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGGGTTSEEE
T ss_pred             CHHHHHHHHCC--CCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHEEEECCCHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf             88989999588--9978999488986779999999999980899977878974698999999999999610110276897


Q ss_pred             EEEC
Q ss_conf             9847
Q batch____       372 LAHG  375 (888)
Q Consensus       372 l~h~  375 (888)
                      -.|+
T Consensus        91 T~~s   94 (623)
T c1pjrA_          91 TFHS   94 (623)
T ss_dssp             EHHH
T ss_pred             EHHH
T ss_conf             5279