14/01/2012 23:30:45 : INFO  : Run start: Sat Jan 14 23:30:44 GMT 2012
14/01/2012 23:30:48 : INFO  : Initialised job
14/01/2012 23:30:49 : INFO  : Renaming log file 'phyre2_20120114_233043.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/5a8bbae251a542e9/phyre_20120114_233043.log'
14/01/2012 23:30:50 : INFO  : Initialised job:
Sequence
>batch____
MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSK
QRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLY
WFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASL
ASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTF
LFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLV
DALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEAS
ASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIG
VCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVI
LLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSI
QPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLF
HARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLF
QRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGAS
LFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDND
ETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRS
FSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMTRVIPANPK

14/01/2012 23:30:51 : INFO  : Checked sequence
14/01/2012 23:30:53 : INFO  : Finding homologues with PSI-BLAST
14/01/2012 23:30:54 : INFO  : PSI-BLAST 3 iterations
14/01/2012 23:34:21 : INFO  : PSI-BLAST 5 iterations
14/01/2012 23:39:26 : INFO  : Finished PSI-BLAST
14/01/2012 23:39:28 : INFO  : Running Buildali to generate a3m file
15/01/2012 00:06:02 : INFO  : Converting to HMM
15/01/2012 00:06:30 : INFO  : Calibrating HMM
15/01/2012 00:07:05 : INFO  : Searching HMM database
15/01/2012 00:26:47 : INFO  : Finished buildali
15/01/2012 00:26:48 : INFO  : Predicting secondary structure
15/01/2012 00:26:52 : INFO  : Predicted secondary structure (PSI-Pred)
15/01/2012 00:26:53 : INFO  : Predicting Disordered regions
15/01/2012 00:26:55 : INFO  : Predicted Disorder (Disopred)
15/01/2012 00:26:55 : INFO  : Running memsat_svm check
15/01/2012 00:29:30 : INFO  : Globular protein
15/01/2012 00:29:31 : INFO  : Predicted Transmembrane (memsat_svm) ID '5a8bbae251a542e9'
15/01/2012 00:29:32 : INFO  : Initialising fold library search
15/01/2012 00:29:34 : INFO  : Initialised search input
15/01/2012 00:29:36 : INFO  : Building Ensemble models
15/01/2012 00:29:39 : INFO  : Building hh.c2eyqA_.model.1.pdb
15/01/2012 00:29:49 : INFO  : Building hh.c2xgjA_.model.2.pdb
15/01/2012 00:29:58 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/5a8bbae251a542e9/hh.c2xgjA_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/5a8bbae251a542e9/c2xgjA_.2.pdb
15/01/2012 00:30:01 : INFO  : Building hh.c2va8A_.model.3.pdb
15/01/2012 00:30:10 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/5a8bbae251a542e9/hh.c2va8A_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/5a8bbae251a542e9/c2va8A_.3.pdb
15/01/2012 00:30:13 : INFO  : Building hh.c4a4zA_.model.4.pdb
15/01/2012 00:30:22 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/5a8bbae251a542e9/hh.c4a4zA_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/5a8bbae251a542e9/c4a4zA_.4.pdb
15/01/2012 00:30:25 : INFO  : Building hh.c3l9oA_.model.5.pdb
15/01/2012 00:30:33 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/5a8bbae251a542e9/hh.c3l9oA_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/5a8bbae251a542e9/c3l9oA_.5.pdb
15/01/2012 00:30:36 : INFO  : Building hh.c1gm5A_.model.6.pdb
15/01/2012 00:30:44 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/5a8bbae251a542e9/hh.c1gm5A_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/5a8bbae251a542e9/c1gm5A_.6.pdb
15/01/2012 00:30:47 : INFO  : Building hh.c3skdA_.model.7.pdb
15/01/2012 00:30:55 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/5a8bbae251a542e9/hh.c3skdA_.model.7.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/5a8bbae251a542e9/c3skdA_.8.pdb
15/01/2012 00:30:58 : INFO  : Building c2eyqA_.1.pdb
15/01/2012 00:31:08 : INFO  : Building c2xgjA_.2.pdb
15/01/2012 00:31:19 : INFO  : Building c2va8A_.3.pdb
15/01/2012 00:31:30 : INFO  : Building c4a4zA_.4.pdb
15/01/2012 00:31:40 : INFO  : Building c3l9oA_.5.pdb
15/01/2012 00:31:50 : INFO  : Building c1gm5A_.6.pdb
15/01/2012 00:32:01 : INFO  : Building c2jlrA_.7.pdb
15/01/2012 00:32:12 : INFO  : Building c3skdA_.8.pdb
15/01/2012 00:32:22 : INFO  : Building c2v6jA_.9.pdb
15/01/2012 00:32:32 : INFO  : Building c2v1xB_.10.pdb
15/01/2012 00:32:41 : INFO  : Building c2zj2A_.11.pdb
15/01/2012 00:32:52 : INFO  : Building c3rc8A_.12.pdb
15/01/2012 00:33:02 : INFO  : Building c2p6uA_.13.pdb
15/01/2012 00:33:12 : INFO  : Building c2vbcA_.14.pdb
15/01/2012 00:33:21 : INFO  : Building c1gl9B_.15.pdb
15/01/2012 00:33:29 : INFO  : Building c1oywA_.16.pdb
15/01/2012 00:33:38 : INFO  : Building c2z83A_.17.pdb
15/01/2012 00:33:48 : INFO  : Building c3i5yA_.18.pdb
15/01/2012 00:33:58 : INFO  : Building c3kx2A_.19.pdb
15/01/2012 00:34:07 : INFO  : Building c2ocaA_.20.pdb
15/01/2012 00:35:42 : INFO  : Finished HH model building
15/01/2012 00:35:43 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
15/01/2012 00:36:36 : INFO  : html domain output complete ID '5a8bbae251a542e9'
15/01/2012 03:32:17 : INFO  : Run end  : Sun Jan 15 03:32:16 GMT 2012
