BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (108 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_A6TI07 Trp operon repressor n=18 Tax=Gammaproteobacteri... 174 1e-42 UniRef50_C6DF27 Trp operon repressor n=10 Tax=Enterobacteriaceae... 126 2e-28 UniRef50_A1JJB6 Trp operon repressor n=142 Tax=Enterobacteriacea... 120 1e-26 UniRef50_Q5E7E2 Trp operon repressor homolog n=19 Tax=Vibrionale... 94 1e-18 UniRef50_B6EGC9 Trp operon repressor homolog n=41 Tax=Vibrionace... 92 5e-18 UniRef50_Q4QM70 Trp operon repressor homolog n=20 Tax=Pasteurell... 73 3e-12 UniRef50_Q0I456 Trp operon repressor homolog n=3 Tax=Pasteurella... 65 6e-10 UniRef50_Q65S87 Trp operon repressor homolog n=10 Tax=Pasteurell... 65 9e-10 UniRef50_A3QBU9 Trp operon repressor n=8 Tax=Shewanella RepID=A3... 64 1e-09 UniRef50_Q254S6 Trp operon repressor homolog n=12 Tax=Chlamydiac... 64 2e-09 UniRef50_A9KCV9 Trp operon repressor n=6 Tax=Coxiella burnetii R... 62 4e-09 UniRef50_A0Q8R4 Trp operon repressor n=17 Tax=Francisella RepID=... 59 5e-08 UniRef50_A1S403 Trp operon repressor n=12 Tax=Shewanella RepID=A... 54 2e-06 UniRef50_Q1ZEC8 Trp operon repressor n=1 Tax=Psychromonas sp. CN... 51 9e-06 UniRef50_B2I4R3 Trp operon repressor homolog n=3 Tax=Xylella fas... 47 2e-04 UniRef50_Q4FR44 Trp operon repressor n=2 Tax=Psychrobacter RepID... 46 3e-04 UniRef50_A6VT14 Trp operon repressor n=3 Tax=Gammaproteobacteria... 45 5e-04 UniRef50_A6FA32 Putative uncharacterized protein n=1 Tax=Moritel... 45 6e-04 UniRef50_A5WEL3 Trp operon repressor n=1 Tax=Psychrobacter sp. P... 44 0.002 UniRef50_C1QCQ6 Trp operon repressor n=2 Tax=Brachyspira RepID=C... 43 0.003 UniRef50_B2KCI4 Trp repressor n=1 Tax=Elusimicrobium minutum Pei... 41 0.014 UniRef50_C8PXM0 Trp operon repressor n=1 Tax=Enhydrobacter aeros... 40 0.016 >UniRef50_A6TI07 Trp operon repressor n=18 Tax=Gammaproteobacteria RepID=TRPR_KLEP7 Length = 109 Score = 174 bits (440), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 95/108 (87%), Positives = 100/108 (92%) Query: 1 MAQQSPYSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEE 60 M QQSPYSAA+AEQRHQEWLRFV LL+ AY DLHLPLL LMLTPDEREALGTRVRI+EE Sbjct: 1 MTQQSPYSAAVAEQRHQEWLRFVALLQQAYAEDLHLPLLQLMLTPDEREALGTRVRIIEE 60 Query: 61 LLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLLKSD 108 LLRGEMSQRELKNELGAGIATITRGSNSLK+APVELRQWLE+ LL SD Sbjct: 61 LLRGEMSQRELKNELGAGIATITRGSNSLKSAPVELRQWLEQTLLASD 108 >UniRef50_C6DF27 Trp operon repressor n=10 Tax=Enterobacteriaceae RepID=TRPR_PECCP Length = 115 Score = 126 bits (316), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 71/99 (71%), Positives = 83/99 (83%) Query: 10 AMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQR 69 A++EQ ++ WLRFV LL+ + DL LPLL L+LTPDER ALGTRVRIV+EL+RGEMSQR Sbjct: 10 ALSEQDNEHWLRFVALLQQSIAEDLQLPLLQLLLTPDERTALGTRVRIVQELMRGEMSQR 69 Query: 70 ELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLLKSD 108 ELK+ELGAGIATITRGSNSLKAAP L+ WLE LL +D Sbjct: 70 ELKSELGAGIATITRGSNSLKAAPPALKSWLEAQLLSAD 108 >UniRef50_A1JJB6 Trp operon repressor n=142 Tax=Enterobacteriaceae RepID=TRPR_YERE8 Length = 110 Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 69/95 (72%), Positives = 80/95 (84%) Query: 11 MAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRE 70 ++ +Q WL FV LL++A DLHLPLL LMLTPDER ALGTRVRI+EEL+RGE+SQRE Sbjct: 11 LSNDDNQHWLTFVALLQDAIAQDLHLPLLQLMLTPDERTALGTRVRIIEELMRGELSQRE 70 Query: 71 LKNELGAGIATITRGSNSLKAAPVELRQWLEEVLL 105 LKN+LGAGIATITRGSNSLKAAP +L+ WLE LL Sbjct: 71 LKNQLGAGIATITRGSNSLKAAPPQLKSWLEAQLL 105 >UniRef50_Q5E7E2 Trp operon repressor homolog n=19 Tax=Vibrionales RepID=TRPR_VIBF1 Length = 108 Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 46/93 (49%), Positives = 65/93 (69%) Query: 15 RHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNE 74 ++ +W + + L+ NA + H PLL +++TPDEREAL RV I ELL+GE+SQR++ Sbjct: 6 KYSDWSQVMTLIANAAEQGNHQPLLTMLMTPDEREALVARVNIFHELLQGELSQRQISQL 65 Query: 75 LGAGIATITRGSNSLKAAPVELRQWLEEVLLKS 107 LG G+ATITRGSN LK+ E + WL ++L KS Sbjct: 66 LGVGVATITRGSNELKSHTDEEKVWLMDLLEKS 98 >UniRef50_B6EGC9 Trp operon repressor homolog n=41 Tax=Vibrionaceae RepID=TRPR_ALISL Length = 108 Score = 92.0 bits (227), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 43/90 (47%), Positives = 63/90 (70%) Query: 15 RHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNE 74 ++ +W + + L+ NA + + H LL +++TPDEREAL RV I ELL+G++SQR++ Sbjct: 6 KYSDWSQVMALIANAAEQNKHQSLLTMLMTPDEREALMARVNICHELLQGDLSQRQISQL 65 Query: 75 LGAGIATITRGSNSLKAAPVELRQWLEEVL 104 LG G+ATITRGSN LK+ + + WL EVL Sbjct: 66 LGVGVATITRGSNELKSHTDDEKAWLMEVL 95 >UniRef50_Q4QM70 Trp operon repressor homolog n=20 Tax=Pasteurellaceae RepID=TRPR_HAEI8 Length = 101 Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 56/88 (63%) Query: 17 QEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELG 76 ++W F+ +LK A++ + L L+LT DER+A+G R++IV +L+ M QRE++ L Sbjct: 8 EQWNAFLQMLKIAFEENKAQEFLTLLLTADERDAVGLRLQIVSQLIDKNMPQREIQQNLN 67 Query: 77 AGIATITRGSNSLKAAPVELRQWLEEVL 104 ATITRGSN +K + QW+++ L Sbjct: 68 TSAATITRGSNMIKTMDPDFMQWMKQHL 95 >UniRef50_Q0I456 Trp operon repressor homolog n=3 Tax=Pasteurellaceae RepID=TRPR_HAES1 Length = 106 Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 37/88 (42%), Positives = 57/88 (64%) Query: 17 QEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELG 76 ++W F+DL++ A++ LL L+LT DER+A+ RV+IV +LL ++QRE++ L Sbjct: 8 EQWNEFLDLMRKAFEQGKEQELLTLLLTADERDAVALRVQIVSQLLDKSLAQREIQQILN 67 Query: 77 AGIATITRGSNSLKAAPVELRQWLEEVL 104 ATITRGSN +K P E W+++ L Sbjct: 68 TSAATITRGSNMIKIMPPEFMDWVKQQL 95 >UniRef50_Q65S87 Trp operon repressor homolog n=10 Tax=Pasteurellaceae RepID=TRPR_MANSM Length = 101 Score = 64.7 bits (156), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 35/86 (40%), Positives = 58/86 (67%) Query: 17 QEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELG 76 ++W +F++ L+ A+ + LL L+LTPDER+A+G R++IV +LL ++ QRE++ L Sbjct: 8 EQWTKFIETLRIAFNDGKEQDLLTLLLTPDERDAIGLRLQIVAQLLDKKIPQREIQQNLN 67 Query: 77 AGIATITRGSNSLKAAPVELRQWLEE 102 ATITRGSN LK + +W+++ Sbjct: 68 TSAATITRGSNMLKLMSPDFMEWVKK 93 >UniRef50_A3QBU9 Trp operon repressor n=8 Tax=Shewanella RepID=A3QBU9_SHELP Length = 117 Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 34/87 (39%), Positives = 53/87 (60%) Query: 19 WLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAG 78 W ++ + N D + L +L+LT +ER A+ R+++ + LL GEMSQR++ E Sbjct: 31 WDLVLEKVVNHQDTDALMDLFDLLLTEEERSAIAGRLKVFQALLLGEMSQRQIAAEFEIS 90 Query: 79 IATITRGSNSLKAAPVELRQWLEEVLL 105 IATITR SN LK P E R+ ++ ++L Sbjct: 91 IATITRCSNYLKHMPAEQRERIKALIL 117 >UniRef50_Q254S6 Trp operon repressor homolog n=12 Tax=Chlamydiaceae RepID=TRPR_CHLFF Length = 101 Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 48/83 (57%) Query: 19 WLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAG 78 W F++L + L LT ERE++ +R I++ LL +++QRE+ E G Sbjct: 10 WSDFLELCSKIKTPEAFRDFFALFLTFGERESMASRYLIIQALLADQLTQREIAKEYGVS 69 Query: 79 IATITRGSNSLKAAPVELRQWLE 101 IA ITRGSN+LKA E +++L+ Sbjct: 70 IAQITRGSNALKAVDPEFKEFLK 92 >UniRef50_A9KCV9 Trp operon repressor n=6 Tax=Coxiella burnetii RepID=A9KCV9_COXBN Length = 114 Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 34/90 (37%), Positives = 53/90 (58%) Query: 15 RHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNE 74 + + W F+ L + A D L L+ T +E+E L RV +V LLRGE QRE+ ++ Sbjct: 24 KSEGWRGFLTLCQKAETVDQLDELFGLLFTLEEKEQLALRVELVRALLRGEKPQREIAHD 83 Query: 75 LGAGIATITRGSNSLKAAPVELRQWLEEVL 104 L IA ITRGSN+LK +++ ++++ L Sbjct: 84 LNISIAKITRGSNALKTTSDKIKSFIKKYL 113 >UniRef50_A0Q8R4 Trp operon repressor n=17 Tax=Francisella RepID=A0Q8R4_FRATN Length = 95 Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 54/89 (60%), Gaps = 2/89 (2%) Query: 19 WLRFVDLL-KNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGA 77 W + +++L +N+ D+ + + + +LT +E+E L RV + +EL++ SQRE+ E+G Sbjct: 8 WQQLINILSENSDPQDIDI-ICDFLLTKEEKEQLSKRVLLTKELIKKSKSQREISKEIGI 66 Query: 78 GIATITRGSNSLKAAPVELRQWLEEVLLK 106 I T+TR SN+LK +++ E + K Sbjct: 67 SICTVTRCSNALKDCSARVKEIFSENIKK 95 >UniRef50_A1S403 Trp operon repressor n=12 Tax=Shewanella RepID=A1S403_SHEAM Length = 98 Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 43/72 (59%) Query: 19 WLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAG 78 W +D + + D + L L+LT +ER A+ R+++ + LL GE+SQR++ E Sbjct: 5 WNLVLDKILTHPERDELITLFQLLLTEEERSAIAGRLKVFQLLLAGELSQRQIAAEYQIS 64 Query: 79 IATITRGSNSLK 90 IATITR SN LK Sbjct: 65 IATITRCSNYLK 76 >UniRef50_Q1ZEC8 Trp operon repressor n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZEC8_9GAMM Length = 87 Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 50/85 (58%) Query: 22 FVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIAT 81 F LL + + L+ L+L+ +E A+ R+ + +ELL G+ SQRE+ IAT Sbjct: 2 FTKLLDDVGGAEDLATLVPLLLSAEELNAINGRILVYKELLLGKKSQREIAKAHSISIAT 61 Query: 82 ITRGSNSLKAAPVELRQWLEEVLLK 106 ITRGSN+LK+ ++ L+ +L+K Sbjct: 62 ITRGSNNLKSMSSTEKKLLQTLLIK 86 >UniRef50_B2I4R3 Trp operon repressor homolog n=3 Tax=Xylella fastidiosa RepID=TRPR_XYLF2 Length = 92 Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 1/71 (1%) Query: 25 LLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITR 84 L K +D+ L +L +LT E E L R+RI ELL SQRE+ ++LG I ITR Sbjct: 14 LCKTDSTDDMKL-ILECILTRSEMEDLIDRIRIYNELLNTSNSQREVASKLGVSITKITR 72 Query: 85 GSNSLKAAPVE 95 G+ +L+ ++ Sbjct: 73 GAANLQDNNIK 83 >UniRef50_Q4FR44 Trp operon repressor n=2 Tax=Psychrobacter RepID=Q4FR44_PSYA2 Length = 91 Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 39/57 (68%), Gaps = 1/57 (1%) Query: 38 LLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPV 94 LL+ +LT E+ + R+RI + L RG ++QRE+ +LG GIAT++RG+ +++ V Sbjct: 25 LLSALLTDKEQFEIANRIRIFDLLERG-VTQREISEQLGVGIATVSRGAKAMQIHDV 80 >UniRef50_A6VT14 Trp operon repressor n=3 Tax=Gammaproteobacteria RepID=A6VT14_MARMS Length = 76 Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 37/52 (71%), Gaps = 1/52 (1%) Query: 39 LNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLK 90 L ++LTP+E + +R++I+ L G + QR++ +LG GIAT+TRGS +LK Sbjct: 21 LKVLLTPNEINEMVSRLKIIALLDEG-VPQRDIAKQLGVGIATVTRGSRALK 71 >UniRef50_A6FA32 Putative uncharacterized protein n=1 Tax=Moritella sp. PE36 RepID=A6FA32_9GAMM Length = 105 Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 36/57 (63%) Query: 50 ALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLLK 106 A+ R + +ELL E SQRE+ IATITRGSN+LKA + +Q L+ +L++ Sbjct: 48 AINARTLVYKELLLAEKSQREIARIHNISIATITRGSNNLKAMSDKEKQLLQTLLIR 104 >UniRef50_A5WEL3 Trp operon repressor n=1 Tax=Psychrobacter sp. PRwf-1 RepID=A5WEL3_PSYWF Length = 103 Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 38/53 (71%), Gaps = 1/53 (1%) Query: 38 LLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLK 90 +L+ +LT E++ + RVRI + L +G ++QR + +LG GIAT++RG+ +L+ Sbjct: 27 VLSALLTDKEQQDIANRVRIFDLLQQG-VTQRVISQQLGVGIATVSRGARALQ 78 >UniRef50_C1QCQ6 Trp operon repressor n=2 Tax=Brachyspira RepID=C1QCQ6_9SPIR Length = 100 Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 1/54 (1%) Query: 37 PLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLK 90 LL + T DE++ + R+RIV LLR +M Q E+ L A + +ITRG+ LK Sbjct: 19 KLLGELFTKDEQDMIQQRLRIVT-LLRKKMPQYEIAKHLNASLCSITRGAKELK 71 >UniRef50_B2KCI4 Trp repressor n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KCI4_ELUMP Length = 116 Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 4/98 (4%) Query: 5 SPYSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRG 64 S +++ M Q + + V +K+ + L L + TP E + + R R+VE L G Sbjct: 2 SKFTSKMQRQSVKSFANSVLTIKDGERARL---FLEEIFTPAEIKKISLRWRLVEMLSAG 58 Query: 65 EMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEE 102 SQR + N LG + ITRG+ L +Q LEE Sbjct: 59 H-SQRSIANHLGISLCKITRGAKILNKKNSITKQLLEE 95 >UniRef50_C8PXM0 Trp operon repressor n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PXM0_9GAMM Length = 98 Score = 40.4 bits (93), Expect = 0.016, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 1/66 (1%) Query: 23 VDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATI 82 V+LL +D +L +LT E++ + R++I L + + QRE+ LG GIAT+ Sbjct: 16 VELLSQTDDSDFIREILAALLTEKEQKEIANRIQIFA-LFQQALPQREIAERLGVGIATV 74 Query: 83 TRGSNS 88 +RG+ + Sbjct: 75 SRGAKA 80 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A6TI07 Trp operon repressor n=18 Tax=Gammaproteobacteri... 121 6e-27 UniRef50_Q5E7E2 Trp operon repressor homolog n=19 Tax=Vibrionale... 112 5e-24 UniRef50_C6DF27 Trp operon repressor n=10 Tax=Enterobacteriaceae... 110 1e-23 UniRef50_A9KCV9 Trp operon repressor n=6 Tax=Coxiella burnetii R... 108 6e-23 UniRef50_B6EGC9 Trp operon repressor homolog n=41 Tax=Vibrionace... 107 9e-23 UniRef50_A1JJB6 Trp operon repressor n=142 Tax=Enterobacteriacea... 103 2e-21 UniRef50_Q254S6 Trp operon repressor homolog n=12 Tax=Chlamydiac... 101 5e-21 UniRef50_Q4QM70 Trp operon repressor homolog n=20 Tax=Pasteurell... 100 1e-20 UniRef50_A3QBU9 Trp operon repressor n=8 Tax=Shewanella RepID=A3... 99 3e-20 UniRef50_Q65S87 Trp operon repressor homolog n=10 Tax=Pasteurell... 92 4e-18 UniRef50_Q0I456 Trp operon repressor homolog n=3 Tax=Pasteurella... 91 8e-18 UniRef50_A1S403 Trp operon repressor n=12 Tax=Shewanella RepID=A... 91 1e-17 UniRef50_A0Q8R4 Trp operon repressor n=17 Tax=Francisella RepID=... 88 8e-17 UniRef50_Q1ZEC8 Trp operon repressor n=1 Tax=Psychromonas sp. CN... 86 4e-16 UniRef50_A6FA32 Putative uncharacterized protein n=1 Tax=Moritel... 73 3e-12 UniRef50_B2I4R3 Trp operon repressor homolog n=3 Tax=Xylella fas... 70 2e-11 UniRef50_Q4FR44 Trp operon repressor n=2 Tax=Psychrobacter RepID... 68 1e-10 UniRef50_A6VT14 Trp operon repressor n=3 Tax=Gammaproteobacteria... 62 6e-09 UniRef50_A5WEL3 Trp operon repressor n=1 Tax=Psychrobacter sp. P... 59 5e-08 Sequences not found previously or not previously below threshold: UniRef50_C8PXM0 Trp operon repressor n=1 Tax=Enhydrobacter aeros... 65 8e-10 UniRef50_Q6AIY7 Putative uncharacterized protein n=1 Tax=Desulfo... 55 8e-07 UniRef50_C0QDI0 Putative repressor TrpR (Repressor of Trp operon... 54 1e-06 UniRef50_C1QCQ6 Trp operon repressor n=2 Tax=Brachyspira RepID=C... 51 1e-05 UniRef50_B2KCI4 Trp repressor n=1 Tax=Elusimicrobium minutum Pei... 50 2e-05 UniRef50_C5SM72 TrpR like protein, YerC/YecD n=2 Tax=Caulobacter... 47 2e-04 UniRef50_D1RFK1 TrpR-like protein n=4 Tax=Legionella RepID=D1RFK... 46 3e-04 UniRef50_B2I5Y3 TrpR like protein, YerC/YecD n=17 Tax=Gammaprote... 44 0.002 UniRef50_Q0AP79 TrpR like protein, YerC/YecD n=3 Tax=Alphaproteo... 42 0.004 UniRef50_B0RSL2 Putative uncharacterized protein n=3 Tax=Xanthom... 42 0.005 UniRef50_C7NG11 TrpR-related protein YerC/YecD n=1 Tax=Kytococcu... 42 0.008 UniRef50_C6YWN7 Putative uncharacterized protein n=1 Tax=Francis... 41 0.010 UniRef50_D0WGN1 TrpR protein n=1 Tax=Slackia exigua ATCC 700122 ... 40 0.029 >UniRef50_A6TI07 Trp operon repressor n=18 Tax=Gammaproteobacteria RepID=TRPR_KLEP7 Length = 109 Score = 121 bits (304), Expect = 6e-27, Method: Composition-based stats. Identities = 95/108 (87%), Positives = 100/108 (92%) Query: 1 MAQQSPYSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEE 60 M QQSPYSAA+AEQRHQEWLRFV LL+ AY DLHLPLL LMLTPDEREALGTRVRI+EE Sbjct: 1 MTQQSPYSAAVAEQRHQEWLRFVALLQQAYAEDLHLPLLQLMLTPDEREALGTRVRIIEE 60 Query: 61 LLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLLKSD 108 LLRGEMSQRELKNELGAGIATITRGSNSLK+APVELRQWLE+ LL SD Sbjct: 61 LLRGEMSQRELKNELGAGIATITRGSNSLKSAPVELRQWLEQTLLASD 108 >UniRef50_Q5E7E2 Trp operon repressor homolog n=19 Tax=Vibrionales RepID=TRPR_VIBF1 Length = 108 Score = 112 bits (279), Expect = 5e-24, Method: Composition-based stats. Identities = 46/93 (49%), Positives = 65/93 (69%) Query: 15 RHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNE 74 ++ +W + + L+ NA + H PLL +++TPDEREAL RV I ELL+GE+SQR++ Sbjct: 6 KYSDWSQVMTLIANAAEQGNHQPLLTMLMTPDEREALVARVNIFHELLQGELSQRQISQL 65 Query: 75 LGAGIATITRGSNSLKAAPVELRQWLEEVLLKS 107 LG G+ATITRGSN LK+ E + WL ++L KS Sbjct: 66 LGVGVATITRGSNELKSHTDEEKVWLMDLLEKS 98 >UniRef50_C6DF27 Trp operon repressor n=10 Tax=Enterobacteriaceae RepID=TRPR_PECCP Length = 115 Score = 110 bits (276), Expect = 1e-23, Method: Composition-based stats. Identities = 73/108 (67%), Positives = 85/108 (78%) Query: 1 MAQQSPYSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEE 60 M S A++EQ ++ WLRFV LL+ + DL LPLL L+LTPDER ALGTRVRIV+E Sbjct: 1 MTPLSLLDPALSEQDNEHWLRFVALLQQSIAEDLQLPLLQLLLTPDERTALGTRVRIVQE 60 Query: 61 LLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLLKSD 108 L+RGEMSQRELK+ELGAGIATITRGSNSLKAAP L+ WLE LL +D Sbjct: 61 LMRGEMSQRELKSELGAGIATITRGSNSLKAAPPALKSWLEAQLLSAD 108 >UniRef50_A9KCV9 Trp operon repressor n=6 Tax=Coxiella burnetii RepID=A9KCV9_COXBN Length = 114 Score = 108 bits (269), Expect = 6e-23, Method: Composition-based stats. Identities = 34/90 (37%), Positives = 53/90 (58%) Query: 15 RHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNE 74 + + W F+ L + A D L L+ T +E+E L RV +V LLRGE QRE+ ++ Sbjct: 24 KSEGWRGFLTLCQKAETVDQLDELFGLLFTLEEKEQLALRVELVRALLRGEKPQREIAHD 83 Query: 75 LGAGIATITRGSNSLKAAPVELRQWLEEVL 104 L IA ITRGSN+LK +++ ++++ L Sbjct: 84 LNISIAKITRGSNALKTTSDKIKSFIKKYL 113 >UniRef50_B6EGC9 Trp operon repressor homolog n=41 Tax=Vibrionaceae RepID=TRPR_ALISL Length = 108 Score = 107 bits (268), Expect = 9e-23, Method: Composition-based stats. Identities = 44/93 (47%), Positives = 64/93 (68%) Query: 15 RHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNE 74 ++ +W + + L+ NA + + H LL +++TPDEREAL RV I ELL+G++SQR++ Sbjct: 6 KYSDWSQVMALIANAAEQNKHQSLLTMLMTPDEREALMARVNICHELLQGDLSQRQISQL 65 Query: 75 LGAGIATITRGSNSLKAAPVELRQWLEEVLLKS 107 LG G+ATITRGSN LK+ + + WL EVL S Sbjct: 66 LGVGVATITRGSNELKSHTDDEKAWLMEVLEVS 98 >UniRef50_A1JJB6 Trp operon repressor n=142 Tax=Enterobacteriaceae RepID=TRPR_YERE8 Length = 110 Score = 103 bits (256), Expect = 2e-21, Method: Composition-based stats. Identities = 69/97 (71%), Positives = 81/97 (83%) Query: 11 MAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRE 70 ++ +Q WL FV LL++A DLHLPLL LMLTPDER ALGTRVRI+EEL+RGE+SQRE Sbjct: 11 LSNDDNQHWLTFVALLQDAIAQDLHLPLLQLMLTPDERTALGTRVRIIEELMRGELSQRE 70 Query: 71 LKNELGAGIATITRGSNSLKAAPVELRQWLEEVLLKS 107 LKN+LGAGIATITRGSNSLKAAP +L+ WLE LL + Sbjct: 71 LKNQLGAGIATITRGSNSLKAAPPQLKSWLEAQLLAN 107 >UniRef50_Q254S6 Trp operon repressor homolog n=12 Tax=Chlamydiaceae RepID=TRPR_CHLFF Length = 101 Score = 101 bits (252), Expect = 5e-21, Method: Composition-based stats. Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 1/92 (1%) Query: 11 MAEQRHQ-EWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQR 69 MA+ ++ W F++L + L LT ERE++ +R I++ LL +++QR Sbjct: 1 MAQASNENGWSDFLELCSKIKTPEAFRDFFALFLTFGERESMASRYLIIQALLADQLTQR 60 Query: 70 ELKNELGAGIATITRGSNSLKAAPVELRQWLE 101 E+ E G IA ITRGSN+LKA E +++L+ Sbjct: 61 EIAKEYGVSIAQITRGSNALKAVDPEFKEFLK 92 >UniRef50_Q4QM70 Trp operon repressor homolog n=20 Tax=Pasteurellaceae RepID=TRPR_HAEI8 Length = 101 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 35/88 (39%), Positives = 56/88 (63%) Query: 17 QEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELG 76 ++W F+ +LK A++ + L L+LT DER+A+G R++IV +L+ M QRE++ L Sbjct: 8 EQWNAFLQMLKIAFEENKAQEFLTLLLTADERDAVGLRLQIVSQLIDKNMPQREIQQNLN 67 Query: 77 AGIATITRGSNSLKAAPVELRQWLEEVL 104 ATITRGSN +K + QW+++ L Sbjct: 68 TSAATITRGSNMIKTMDPDFMQWMKQHL 95 >UniRef50_A3QBU9 Trp operon repressor n=8 Tax=Shewanella RepID=A3QBU9_SHELP Length = 117 Score = 99.4 bits (246), Expect = 3e-20, Method: Composition-based stats. Identities = 34/88 (38%), Positives = 53/88 (60%) Query: 18 EWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGA 77 W ++ + N D + L +L+LT +ER A+ R+++ + LL GEMSQR++ E Sbjct: 30 NWDLVLEKVVNHQDTDALMDLFDLLLTEEERSAIAGRLKVFQALLLGEMSQRQIAAEFEI 89 Query: 78 GIATITRGSNSLKAAPVELRQWLEEVLL 105 IATITR SN LK P E R+ ++ ++L Sbjct: 90 SIATITRCSNYLKHMPAEQRERIKALIL 117 >UniRef50_Q65S87 Trp operon repressor homolog n=10 Tax=Pasteurellaceae RepID=TRPR_MANSM Length = 101 Score = 92.5 bits (228), Expect = 4e-18, Method: Composition-based stats. Identities = 35/87 (40%), Positives = 58/87 (66%) Query: 17 QEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELG 76 ++W +F++ L+ A+ + LL L+LTPDER+A+G R++IV +LL ++ QRE++ L Sbjct: 8 EQWTKFIETLRIAFNDGKEQDLLTLLLTPDERDAIGLRLQIVAQLLDKKIPQREIQQNLN 67 Query: 77 AGIATITRGSNSLKAAPVELRQWLEEV 103 ATITRGSN LK + +W+++ Sbjct: 68 TSAATITRGSNMLKLMSPDFMEWVKKH 94 >UniRef50_Q0I456 Trp operon repressor homolog n=3 Tax=Pasteurellaceae RepID=TRPR_HAES1 Length = 106 Score = 91.3 bits (225), Expect = 8e-18, Method: Composition-based stats. Identities = 37/88 (42%), Positives = 57/88 (64%) Query: 17 QEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELG 76 ++W F+DL++ A++ LL L+LT DER+A+ RV+IV +LL ++QRE++ L Sbjct: 8 EQWNEFLDLMRKAFEQGKEQELLTLLLTADERDAVALRVQIVSQLLDKSLAQREIQQILN 67 Query: 77 AGIATITRGSNSLKAAPVELRQWLEEVL 104 ATITRGSN +K P E W+++ L Sbjct: 68 TSAATITRGSNMIKIMPPEFMDWVKQQL 95 >UniRef50_A1S403 Trp operon repressor n=12 Tax=Shewanella RepID=A1S403_SHEAM Length = 98 Score = 90.9 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 30/87 (34%), Positives = 49/87 (56%) Query: 19 WLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAG 78 W +D + + D + L L+LT +ER A+ R+++ + LL GE+SQR++ E Sbjct: 5 WNLVLDKILTHPERDELITLFQLLLTEEERSAIAGRLKVFQLLLAGELSQRQIAAEYQIS 64 Query: 79 IATITRGSNSLKAAPVELRQWLEEVLL 105 IATITR SN LK R + ++++ Sbjct: 65 IATITRCSNYLKHMNEAERAVIAKLIV 91 >UniRef50_A0Q8R4 Trp operon repressor n=17 Tax=Francisella RepID=A0Q8R4_FRATN Length = 95 Score = 88.2 bits (217), Expect = 8e-17, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 49/91 (53%) Query: 16 HQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNEL 75 + W + +++L + + +LT +E+E L RV + +EL++ SQRE+ E+ Sbjct: 5 NNGWQQLINILSENSDPQDIDIICDFLLTKEEKEQLSKRVLLTKELIKKSKSQREISKEI 64 Query: 76 GAGIATITRGSNSLKAAPVELRQWLEEVLLK 106 G I T+TR SN+LK +++ E + K Sbjct: 65 GISICTVTRCSNALKDCSARVKEIFSENIKK 95 >UniRef50_Q1ZEC8 Trp operon repressor n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZEC8_9GAMM Length = 87 Score = 85.5 bits (210), Expect = 4e-16, Method: Composition-based stats. Identities = 31/85 (36%), Positives = 50/85 (58%) Query: 22 FVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIAT 81 F LL + + L+ L+L+ +E A+ R+ + +ELL G+ SQRE+ IAT Sbjct: 2 FTKLLDDVGGAEDLATLVPLLLSAEELNAINGRILVYKELLLGKKSQREIAKAHSISIAT 61 Query: 82 ITRGSNSLKAAPVELRQWLEEVLLK 106 ITRGSN+LK+ ++ L+ +L+K Sbjct: 62 ITRGSNNLKSMSSTEKKLLQTLLIK 86 >UniRef50_A6FA32 Putative uncharacterized protein n=1 Tax=Moritella sp. PE36 RepID=A6FA32_9GAMM Length = 105 Score = 72.8 bits (177), Expect = 3e-12, Method: Composition-based stats. Identities = 34/85 (40%), Positives = 51/85 (60%) Query: 22 FVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIAT 81 F +LL N + +L L+L+P+E A+ R + +ELL E SQRE+ IAT Sbjct: 20 FKELLLNISGEEDVSLMLPLLLSPEELNAINARTLVYKELLLAEKSQREIARIHNISIAT 79 Query: 82 ITRGSNSLKAAPVELRQWLEEVLLK 106 ITRGSN+LKA + +Q L+ +L++ Sbjct: 80 ITRGSNNLKAMSDKEKQLLQTLLIR 104 >UniRef50_B2I4R3 Trp operon repressor homolog n=3 Tax=Xylella fastidiosa RepID=TRPR_XYLF2 Length = 92 Score = 70.1 bits (170), Expect = 2e-11, Method: Composition-based stats. Identities = 28/81 (34%), Positives = 42/81 (51%) Query: 15 RHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNE 74 R Q + + +L D +L +LT E E L R+RI ELL SQRE+ ++ Sbjct: 3 REQAFEMLIKILCKTDSTDDMKLILECILTRSEMEDLIDRIRIYNELLNTSNSQREVASK 62 Query: 75 LGAGIATITRGSNSLKAAPVE 95 LG I ITRG+ +L+ ++ Sbjct: 63 LGVSITKITRGAANLQDNNIK 83 >UniRef50_Q4FR44 Trp operon repressor n=2 Tax=Psychrobacter RepID=Q4FR44_PSYA2 Length = 91 Score = 67.8 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 4/84 (4%) Query: 11 MAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRE 70 M+ ++ + ++ D+ LL+ +LT E+ + R+RI + L RG ++QRE Sbjct: 1 MSTDPYRSLSNHLASCDDSVDIDM---LLSALLTDKEQFEIANRIRIFDLLERG-VTQRE 56 Query: 71 LKNELGAGIATITRGSNSLKAAPV 94 + +LG GIAT++RG+ +++ V Sbjct: 57 ISEQLGVGIATVSRGAKAMQIHDV 80 >UniRef50_C8PXM0 Trp operon repressor n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PXM0_9GAMM Length = 98 Score = 64.7 bits (156), Expect = 8e-10, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Query: 19 WLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAG 78 + V+LL +D +L +LT E++ + R++I L + + QRE+ LG G Sbjct: 12 YDYLVELLSQTDDSDFIREILAALLTEKEQKEIANRIQIF-ALFQQALPQREIAERLGVG 70 Query: 79 IATITRGSNSLKAAPVEL 96 IAT++RG+ + + Sbjct: 71 IATVSRGAKAYGQHDINQ 88 >UniRef50_A6VT14 Trp operon repressor n=3 Tax=Gammaproteobacteria RepID=A6VT14_MARMS Length = 76 Score = 62.1 bits (149), Expect = 6e-09, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 1/70 (1%) Query: 21 RFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIA 80 + L + L ++LTP+E + +R++I+ L G + QR++ +LG GIA Sbjct: 3 DLIQFLTEVDDESVLEKRLKVLLTPNEINEMVSRLKIIALLDEG-VPQRDIAKQLGVGIA 61 Query: 81 TITRGSNSLK 90 T+TRGS +LK Sbjct: 62 TVTRGSRALK 71 >UniRef50_A5WEL3 Trp operon repressor n=1 Tax=Psychrobacter sp. PRwf-1 RepID=A5WEL3_PSYWF Length = 103 Score = 59.0 bits (141), Expect = 5e-08, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 39/63 (61%), Gaps = 1/63 (1%) Query: 32 NDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKA 91 + +L+ +LT E++ + RVRI + L +G ++QR + +LG GIAT++RG+ +L+ Sbjct: 21 DKEIDAVLSALLTDKEQQDIANRVRIFDLLQQG-VTQRVISQQLGVGIATVSRGARALQQ 79 Query: 92 APV 94 Sbjct: 80 QDA 82 >UniRef50_Q6AIY7 Putative uncharacterized protein n=1 Tax=Desulfotalea psychrophila RepID=Q6AIY7_DESPS Length = 116 Score = 54.7 bits (130), Expect = 8e-07, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 1/75 (1%) Query: 31 QNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLK 90 + + MLTP E L R +I+ L GE SQR + + G + ITRGS LK Sbjct: 37 DPEEMELFFDEMLTPKEINDLCMRWQILRGLRAGE-SQRAIAAKHGMSLCKITRGSKVLK 95 Query: 91 AAPVELRQWLEEVLL 105 + LE L+ Sbjct: 96 DGNAVAVKLLESGLI 110 >UniRef50_C0QDI0 Putative repressor TrpR (Repressor of Trp operon) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QDI0_DESAH Length = 119 Score = 54.0 bits (128), Expect = 1e-06, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 1/87 (1%) Query: 22 FVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIAT 81 V + + + + + TP E L R +++ +L RG M+QR++ + G + Sbjct: 25 VVAIARQSDNLEELDLFFQEIFTPGELADLSLRWKLLTDLDRG-MTQRKIAEKYGISLCK 83 Query: 82 ITRGSNSLKAAPVELRQWLEEVLLKSD 108 ITRGS LK + + L + + D Sbjct: 84 ITRGSKILKKKNSIVFKILRQAVKAVD 110 >UniRef50_C1QCQ6 Trp operon repressor n=2 Tax=Brachyspira RepID=C1QCQ6_9SPIR Length = 100 Score = 50.9 bits (120), Expect = 1e-05, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 1/81 (1%) Query: 25 LLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITR 84 +L + LL + T DE++ + R+RIV LLR +M Q E+ L A + +ITR Sbjct: 7 ILATETDEEFIKKLLGELFTKDEQDMIQQRLRIVT-LLRKKMPQYEIAKHLNASLCSITR 65 Query: 85 GSNSLKAAPVELRQWLEEVLL 105 G+ LK L +++ L+ Sbjct: 66 GAKELKKEDSALAVIVDKYLI 86 >UniRef50_B2KCI4 Trp repressor n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KCI4_ELUMP Length = 116 Score = 50.1 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 1/95 (1%) Query: 8 SAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMS 67 S ++ + Q F + + + L + TP E + + R R+VE L G S Sbjct: 2 SKFTSKMQRQSVKSFANSVLTIKDGERARLFLEEIFTPAEIKKISLRWRLVEMLSAGH-S 60 Query: 68 QRELKNELGAGIATITRGSNSLKAAPVELRQWLEE 102 QR + N LG + ITRG+ L +Q LEE Sbjct: 61 QRSIANHLGISLCKITRGAKILNKKNSITKQLLEE 95 >UniRef50_C5SM72 TrpR like protein, YerC/YecD n=2 Tax=Caulobacteraceae RepID=C5SM72_9CAUL Length = 106 Score = 47.0 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 35/86 (40%) Query: 21 RFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIA 80 V L + L+ + TP E A R ++ L +S R++ GA Sbjct: 18 ELVRALLTLKTAEEVRAFLDDLCTPSEIRAFAERFKVARLLDENALSYRDISERTGASTT 77 Query: 81 TITRGSNSLKAAPVELRQWLEEVLLK 106 T+TR + L+ P + + + + L + Sbjct: 78 TVTRVARFLRDMPHKGYRLVIDRLKQ 103 >UniRef50_D1RFK1 TrpR-like protein n=4 Tax=Legionella RepID=D1RFK1_LEGLO Length = 98 Score = 46.3 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 1/75 (1%) Query: 15 RHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNE 74 +H + + + L + TP E EA+ R ++V L +G + R + + Sbjct: 8 KHSALPNLMHAISLLENKEEALQFFTDLCTPAELEAMADRWQVVPLLRQG-IPYRTIHEQ 66 Query: 75 LGAGIATITRGSNSL 89 G + TITR + L Sbjct: 67 TGVSVTTITRVARCL 81 >UniRef50_B2I5Y3 TrpR like protein, YerC/YecD n=17 Tax=Gammaproteobacteria RepID=B2I5Y3_XYLF2 Length = 112 Score = 43.6 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Query: 36 LPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVE 95 L L + TP E EAL R R+V LL+G R++ + G + TI R + L+ Sbjct: 34 LAFLRDLCTPAELEALADRWRVVPLLLQGR-PYRDIHDHTGISVTTIGRVARCLEHGTGG 92 Query: 96 LRQWLEEV 103 L+ Sbjct: 93 YAAVLQAQ 100 >UniRef50_Q0AP79 TrpR like protein, YerC/YecD n=3 Tax=Alphaproteobacteria RepID=Q0AP79_MARMM Length = 105 Score = 42.4 bits (98), Expect = 0.004, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 30/85 (35%) Query: 9 AAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQ 68 AA + + L +LTP E + L R R+ L G S Sbjct: 5 AAGRSDGPTDLSALSAAILALKDAGEAERFLRDLLTPGEMKTLTERWRVAGLLAEGGHSY 64 Query: 69 RELKNELGAGIATITRGSNSLKAAP 93 RE+ GA T+TR + L P Sbjct: 65 REISEMTGASTTTVTRVARFLSQEP 89 >UniRef50_B0RSL2 Putative uncharacterized protein n=3 Tax=Xanthomonas campestris pv. campestris RepID=B0RSL2_XANCB Length = 134 Score = 42.4 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 30 YQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSL 89 L + TP E EA+ R R+V L++G + RE+ + + TI R + +L Sbjct: 54 EAPGAVEAFLRDLCTPAELEAMSDRWRVVPLLVKG-VPYREIHDLTQVSVTTIGRVARTL 112 Query: 90 KA 91 + Sbjct: 113 EH 114 >UniRef50_C7NG11 TrpR-related protein YerC/YecD n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NG11_KYTSD Length = 107 Score = 41.6 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 1/83 (1%) Query: 9 AAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQ 68 AA + +L + + D LL + TP EREAL R +V L G MS Sbjct: 6 AAQPRSTIAQQRELARVLASMGEADEIEALLTDLCTPAEREALTDRWAVVPLLAEG-MSY 64 Query: 69 RELKNELGAGIATITRGSNSLKA 91 R + G + T+ R + ++ Sbjct: 65 RAIHEATGVSVTTVGRVARCVED 87 >UniRef50_C6YWN7 Putative uncharacterized protein n=1 Tax=Francisella philomiragia subsp. philomiragia ATCC 25015 RepID=C6YWN7_9GAMM Length = 98 Score = 41.2 bits (95), Expect = 0.010, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 3/81 (3%) Query: 11 MAEQRH--QEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQ 68 M+E ++ + ++ K+ + L + TP + A+ R R+V+EL + + Sbjct: 1 MSEIKNNEENLQNLYEVFKSFESAEEAKLFLEDLCTPVDLMAMAARWRVVKEL-KKDKPY 59 Query: 69 RELKNELGAGIATITRGSNSL 89 R++ E G + TI+R + L Sbjct: 60 RQIHAETGVSLTTISRVARCL 80 >UniRef50_D0WGN1 TrpR protein n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WGN1_9ACTN Length = 115 Score = 39.7 bits (91), Expect = 0.029, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 1/79 (1%) Query: 11 MAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRE 70 M++ R E + +L D LL +LT E + R+ + L G Sbjct: 6 MSDLRTPEVESLLKVLVTLDDPDQVYALLEDLLTIREIKETSQRLSVARLLADGR-PYTT 64 Query: 71 LKNELGAGIATITRGSNSL 89 + E GA TI R S +L Sbjct: 65 IAQETGASATTIARVSKAL 83 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A6TI07 Trp operon repressor n=18 Tax=Gammaproteobacteri... 122 4e-27 UniRef50_C6DF27 Trp operon repressor n=10 Tax=Enterobacteriaceae... 119 3e-26 UniRef50_Q5E7E2 Trp operon repressor homolog n=19 Tax=Vibrionale... 113 2e-24 UniRef50_B6EGC9 Trp operon repressor homolog n=41 Tax=Vibrionace... 110 1e-23 UniRef50_Q254S6 Trp operon repressor homolog n=12 Tax=Chlamydiac... 109 3e-23 UniRef50_A9KCV9 Trp operon repressor n=6 Tax=Coxiella burnetii R... 109 3e-23 UniRef50_A1JJB6 Trp operon repressor n=142 Tax=Enterobacteriacea... 108 5e-23 UniRef50_Q4QM70 Trp operon repressor homolog n=20 Tax=Pasteurell... 102 5e-21 UniRef50_A3QBU9 Trp operon repressor n=8 Tax=Shewanella RepID=A3... 101 7e-21 UniRef50_A0Q8R4 Trp operon repressor n=17 Tax=Francisella RepID=... 100 2e-20 UniRef50_B2KCI4 Trp repressor n=1 Tax=Elusimicrobium minutum Pei... 97 2e-19 UniRef50_A1S403 Trp operon repressor n=12 Tax=Shewanella RepID=A... 96 4e-19 UniRef50_Q6AIY7 Putative uncharacterized protein n=1 Tax=Desulfo... 93 3e-18 UniRef50_Q65S87 Trp operon repressor homolog n=10 Tax=Pasteurell... 92 4e-18 UniRef50_Q1ZEC8 Trp operon repressor n=1 Tax=Psychromonas sp. CN... 91 1e-17 UniRef50_Q0I456 Trp operon repressor homolog n=3 Tax=Pasteurella... 90 3e-17 UniRef50_C0QDI0 Putative repressor TrpR (Repressor of Trp operon... 89 4e-17 UniRef50_C5SM72 TrpR like protein, YerC/YecD n=2 Tax=Caulobacter... 88 9e-17 UniRef50_D1RFK1 TrpR-like protein n=4 Tax=Legionella RepID=D1RFK... 87 2e-16 UniRef50_C8PXM0 Trp operon repressor n=1 Tax=Enhydrobacter aeros... 86 4e-16 UniRef50_B2I4R3 Trp operon repressor homolog n=3 Tax=Xylella fas... 84 1e-15 UniRef50_Q4FR44 Trp operon repressor n=2 Tax=Psychrobacter RepID... 82 6e-15 UniRef50_A6FA32 Putative uncharacterized protein n=1 Tax=Moritel... 78 7e-14 UniRef50_C1QCQ6 Trp operon repressor n=2 Tax=Brachyspira RepID=C... 78 7e-14 UniRef50_A6VT14 Trp operon repressor n=3 Tax=Gammaproteobacteria... 75 7e-13 UniRef50_A5WEL3 Trp operon repressor n=1 Tax=Psychrobacter sp. P... 73 2e-12 Sequences not found previously or not previously below threshold: UniRef50_Q0AP79 TrpR like protein, YerC/YecD n=3 Tax=Alphaproteo... 72 4e-12 UniRef50_B0RSL2 Putative uncharacterized protein n=3 Tax=Xanthom... 72 7e-12 UniRef50_C6YWN7 Putative uncharacterized protein n=1 Tax=Francis... 72 8e-12 UniRef50_B2I5Y3 TrpR like protein, YerC/YecD n=17 Tax=Gammaprote... 70 1e-11 UniRef50_C7NG11 TrpR-related protein YerC/YecD n=1 Tax=Kytococcu... 68 1e-10 UniRef50_C4F7F1 Putative uncharacterized protein n=2 Tax=Collins... 67 2e-10 UniRef50_B2KCM2 TrpR like protein, YerC/YecD n=1 Tax=Elusimicrob... 65 5e-10 UniRef50_A4EAH7 Putative uncharacterized protein n=1 Tax=Collins... 65 6e-10 UniRef50_D0WGN1 TrpR protein n=1 Tax=Slackia exigua ATCC 700122 ... 60 3e-08 UniRef50_C2HG06 Sporulation protein YerC n=2 Tax=Finegoldia magn... 59 4e-08 UniRef50_C7N1D6 TrpR-related protein YerC/YecD n=1 Tax=Slackia h... 59 7e-08 UniRef50_C8WRX5 TrpR like protein, YerC/YecD n=2 Tax=Alicyclobac... 58 7e-08 UniRef50_B7GFU8 Trp repressor n=113 Tax=Bacteria RepID=B7GFU8_ANOFW 57 2e-07 UniRef50_C9RVM9 TrpR like protein, YerC/YecD n=56 Tax=Firmicutes... 57 2e-07 UniRef50_B0TDN6 Trpr-like protein yerc/yecd, putative n=22 Tax=B... 55 6e-07 UniRef50_A8SES0 Putative uncharacterized protein n=1 Tax=Faecali... 55 7e-07 UniRef50_A5CZ45 Uncharacterized protein conserved in bacteria n=... 55 9e-07 UniRef50_Q7BVT7 Uncharacterized protein yerC n=27 Tax=Bacteria R... 55 1e-06 UniRef50_C9LTV5 TrpR protein n=2 Tax=Bacteria RepID=C9LTV5_9FIRM 54 1e-06 UniRef50_C4V2I1 Sporulation protein YerC n=1 Tax=Selenomonas flu... 54 1e-06 UniRef50_B2A5W3 TrpR like protein, YerC/YecD n=4 Tax=Bacteria Re... 54 1e-06 UniRef50_UPI00016C0C65 hypothetical protein Epulo_04650 n=1 Tax=... 54 2e-06 UniRef50_C8WKR5 TrpR like protein, YerC/YecD n=2 Tax=Coriobacter... 54 2e-06 UniRef50_D2RJP7 TrpR like protein, YerC/YecD n=1 Tax=Acidaminoco... 52 4e-06 UniRef50_C7H5T0 TrpR protein n=2 Tax=Faecalibacterium prausnitzi... 52 6e-06 UniRef50_B8FP15 TrpR like protein, YerC/YecD n=11 Tax=Firmicutes... 51 9e-06 UniRef50_C7H8F3 TrpR protein n=1 Tax=Faecalibacterium prausnitzi... 51 9e-06 UniRef50_C0W9Z1 Predicted protein n=1 Tax=Acidaminococcus sp. D2... 51 1e-05 UniRef50_A9NHU1 Putative uncharacterized protein n=1 Tax=Acholep... 51 1e-05 UniRef50_D1PNL9 TrpR protein n=1 Tax=Subdoligranulum variabile D... 47 3e-04 UniRef50_D1Y7S3 TrpR-like protein n=1 Tax=Pyramidobacter piscole... 47 3e-04 UniRef50_P12254 RNA polymerase sigma-K factor n=23 Tax=Bacteria ... 44 0.001 UniRef50_A5ZVS0 RNA polymerase sigma factor n=2 Tax=Ruminococcus... 42 0.004 UniRef50_Q13WC2 Putative Transcriptional regulator, Fis family n... 40 0.033 UniRef50_P62180 RNA polymerase sigma-28 factor n=146 Tax=Firmicu... 39 0.051 >UniRef50_A6TI07 Trp operon repressor n=18 Tax=Gammaproteobacteria RepID=TRPR_KLEP7 Length = 109 Score = 122 bits (305), Expect = 4e-27, Method: Composition-based stats. Identities = 95/108 (87%), Positives = 100/108 (92%) Query: 1 MAQQSPYSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEE 60 M QQSPYSAA+AEQRHQEWLRFV LL+ AY DLHLPLL LMLTPDEREALGTRVRI+EE Sbjct: 1 MTQQSPYSAAVAEQRHQEWLRFVALLQQAYAEDLHLPLLQLMLTPDEREALGTRVRIIEE 60 Query: 61 LLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLLKSD 108 LLRGEMSQRELKNELGAGIATITRGSNSLK+APVELRQWLE+ LL SD Sbjct: 61 LLRGEMSQRELKNELGAGIATITRGSNSLKSAPVELRQWLEQTLLASD 108 >UniRef50_C6DF27 Trp operon repressor n=10 Tax=Enterobacteriaceae RepID=TRPR_PECCP Length = 115 Score = 119 bits (298), Expect = 3e-26, Method: Composition-based stats. Identities = 73/108 (67%), Positives = 85/108 (78%) Query: 1 MAQQSPYSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEE 60 M S A++EQ ++ WLRFV LL+ + DL LPLL L+LTPDER ALGTRVRIV+E Sbjct: 1 MTPLSLLDPALSEQDNEHWLRFVALLQQSIAEDLQLPLLQLLLTPDERTALGTRVRIVQE 60 Query: 61 LLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLLKSD 108 L+RGEMSQRELK+ELGAGIATITRGSNSLKAAP L+ WLE LL +D Sbjct: 61 LMRGEMSQRELKSELGAGIATITRGSNSLKAAPPALKSWLEAQLLSAD 108 >UniRef50_Q5E7E2 Trp operon repressor homolog n=19 Tax=Vibrionales RepID=TRPR_VIBF1 Length = 108 Score = 113 bits (282), Expect = 2e-24, Method: Composition-based stats. Identities = 46/95 (48%), Positives = 65/95 (68%) Query: 13 EQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELK 72 ++ +W + + L+ NA + H PLL +++TPDEREAL RV I ELL+GE+SQR++ Sbjct: 4 SAKYSDWSQVMTLIANAAEQGNHQPLLTMLMTPDEREALVARVNIFHELLQGELSQRQIS 63 Query: 73 NELGAGIATITRGSNSLKAAPVELRQWLEEVLLKS 107 LG G+ATITRGSN LK+ E + WL ++L KS Sbjct: 64 QLLGVGVATITRGSNELKSHTDEEKVWLMDLLEKS 98 >UniRef50_B6EGC9 Trp operon repressor homolog n=41 Tax=Vibrionaceae RepID=TRPR_ALISL Length = 108 Score = 110 bits (275), Expect = 1e-23, Method: Composition-based stats. Identities = 44/95 (46%), Positives = 64/95 (67%) Query: 13 EQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELK 72 ++ +W + + L+ NA + + H LL +++TPDEREAL RV I ELL+G++SQR++ Sbjct: 4 SAKYSDWSQVMALIANAAEQNKHQSLLTMLMTPDEREALMARVNICHELLQGDLSQRQIS 63 Query: 73 NELGAGIATITRGSNSLKAAPVELRQWLEEVLLKS 107 LG G+ATITRGSN LK+ + + WL EVL S Sbjct: 64 QLLGVGVATITRGSNELKSHTDDEKAWLMEVLEVS 98 >UniRef50_Q254S6 Trp operon repressor homolog n=12 Tax=Chlamydiaceae RepID=TRPR_CHLFF Length = 101 Score = 109 bits (272), Expect = 3e-23, Method: Composition-based stats. Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 1/92 (1%) Query: 11 MAEQRHQ-EWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQR 69 MA+ ++ W F++L + L LT ERE++ +R I++ LL +++QR Sbjct: 1 MAQASNENGWSDFLELCSKIKTPEAFRDFFALFLTFGERESMASRYLIIQALLADQLTQR 60 Query: 70 ELKNELGAGIATITRGSNSLKAAPVELRQWLE 101 E+ E G IA ITRGSN+LKA E +++L+ Sbjct: 61 EIAKEYGVSIAQITRGSNALKAVDPEFKEFLK 92 >UniRef50_A9KCV9 Trp operon repressor n=6 Tax=Coxiella burnetii RepID=A9KCV9_COXBN Length = 114 Score = 109 bits (272), Expect = 3e-23, Method: Composition-based stats. Identities = 34/90 (37%), Positives = 53/90 (58%) Query: 15 RHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNE 74 + + W F+ L + A D L L+ T +E+E L RV +V LLRGE QRE+ ++ Sbjct: 24 KSEGWRGFLTLCQKAETVDQLDELFGLLFTLEEKEQLALRVELVRALLRGEKPQREIAHD 83 Query: 75 LGAGIATITRGSNSLKAAPVELRQWLEEVL 104 L IA ITRGSN+LK +++ ++++ L Sbjct: 84 LNISIAKITRGSNALKTTSDKIKSFIKKYL 113 >UniRef50_A1JJB6 Trp operon repressor n=142 Tax=Enterobacteriaceae RepID=TRPR_YERE8 Length = 110 Score = 108 bits (270), Expect = 5e-23, Method: Composition-based stats. Identities = 70/107 (65%), Positives = 83/107 (77%) Query: 1 MAQQSPYSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEE 60 M + ++ +Q WL FV LL++A DLHLPLL LMLTPDER ALGTRVRI+EE Sbjct: 1 MTKLRLTDPNLSNDDNQHWLTFVALLQDAIAQDLHLPLLQLMLTPDERTALGTRVRIIEE 60 Query: 61 LLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLLKS 107 L+RGE+SQRELKN+LGAGIATITRGSNSLKAAP +L+ WLE LL + Sbjct: 61 LMRGELSQRELKNQLGAGIATITRGSNSLKAAPPQLKSWLEAQLLAN 107 >UniRef50_Q4QM70 Trp operon repressor homolog n=20 Tax=Pasteurellaceae RepID=TRPR_HAEI8 Length = 101 Score = 102 bits (253), Expect = 5e-21, Method: Composition-based stats. Identities = 35/88 (39%), Positives = 56/88 (63%) Query: 17 QEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELG 76 ++W F+ +LK A++ + L L+LT DER+A+G R++IV +L+ M QRE++ L Sbjct: 8 EQWNAFLQMLKIAFEENKAQEFLTLLLTADERDAVGLRLQIVSQLIDKNMPQREIQQNLN 67 Query: 77 AGIATITRGSNSLKAAPVELRQWLEEVL 104 ATITRGSN +K + QW+++ L Sbjct: 68 TSAATITRGSNMIKTMDPDFMQWMKQHL 95 >UniRef50_A3QBU9 Trp operon repressor n=8 Tax=Shewanella RepID=A3QBU9_SHELP Length = 117 Score = 101 bits (252), Expect = 7e-21, Method: Composition-based stats. Identities = 34/90 (37%), Positives = 53/90 (58%) Query: 16 HQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNEL 75 W ++ + N D + L +L+LT +ER A+ R+++ + LL GEMSQR++ E Sbjct: 28 RANWDLVLEKVVNHQDTDALMDLFDLLLTEEERSAIAGRLKVFQALLLGEMSQRQIAAEF 87 Query: 76 GAGIATITRGSNSLKAAPVELRQWLEEVLL 105 IATITR SN LK P E R+ ++ ++L Sbjct: 88 EISIATITRCSNYLKHMPAEQRERIKALIL 117 >UniRef50_A0Q8R4 Trp operon repressor n=17 Tax=Francisella RepID=A0Q8R4_FRATN Length = 95 Score = 100 bits (248), Expect = 2e-20, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 49/91 (53%) Query: 16 HQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNEL 75 + W + +++L + + +LT +E+E L RV + +EL++ SQRE+ E+ Sbjct: 5 NNGWQQLINILSENSDPQDIDIICDFLLTKEEKEQLSKRVLLTKELIKKSKSQREISKEI 64 Query: 76 GAGIATITRGSNSLKAAPVELRQWLEEVLLK 106 G I T+TR SN+LK +++ E + K Sbjct: 65 GISICTVTRCSNALKDCSARVKEIFSENIKK 95 >UniRef50_B2KCI4 Trp repressor n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KCI4_ELUMP Length = 116 Score = 97.1 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 1/97 (1%) Query: 7 YSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEM 66 S ++ + Q F + + + L + TP E + + R R+VE L G Sbjct: 1 MSKFTSKMQRQSVKSFANSVLTIKDGERARLFLEEIFTPAEIKKISLRWRLVEMLSAGH- 59 Query: 67 SQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEV 103 SQR + N LG + ITRG+ L +Q LEE Sbjct: 60 SQRSIANHLGISLCKITRGAKILNKKNSITKQLLEER 96 >UniRef50_A1S403 Trp operon repressor n=12 Tax=Shewanella RepID=A1S403_SHEAM Length = 98 Score = 95.9 bits (237), Expect = 4e-19, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 49/90 (54%) Query: 16 HQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNEL 75 W +D + + D + L L+LT +ER A+ R+++ + LL GE+SQR++ E Sbjct: 2 RASWNLVLDKILTHPERDELITLFQLLLTEEERSAIAGRLKVFQLLLAGELSQRQIAAEY 61 Query: 76 GAGIATITRGSNSLKAAPVELRQWLEEVLL 105 IATITR SN LK R + ++++ Sbjct: 62 QISIATITRCSNYLKHMNEAERAVIAKLIV 91 >UniRef50_Q6AIY7 Putative uncharacterized protein n=1 Tax=Desulfotalea psychrophila RepID=Q6AIY7_DESPS Length = 116 Score = 92.8 bits (229), Expect = 3e-18, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 1/86 (1%) Query: 20 LRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGI 79 + + + MLTP E L R +I+ L GE SQR + + G + Sbjct: 26 RQIAAAFSLITDPEEMELFFDEMLTPKEINDLCMRWQILRGLRAGE-SQRAIAAKHGMSL 84 Query: 80 ATITRGSNSLKAAPVELRQWLEEVLL 105 ITRGS LK + LE L+ Sbjct: 85 CKITRGSKVLKDGNAVAVKLLESGLI 110 >UniRef50_Q65S87 Trp operon repressor homolog n=10 Tax=Pasteurellaceae RepID=TRPR_MANSM Length = 101 Score = 92.4 bits (228), Expect = 4e-18, Method: Composition-based stats. Identities = 35/87 (40%), Positives = 58/87 (66%) Query: 17 QEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELG 76 ++W +F++ L+ A+ + LL L+LTPDER+A+G R++IV +LL ++ QRE++ L Sbjct: 8 EQWTKFIETLRIAFNDGKEQDLLTLLLTPDERDAIGLRLQIVAQLLDKKIPQREIQQNLN 67 Query: 77 AGIATITRGSNSLKAAPVELRQWLEEV 103 ATITRGSN LK + +W+++ Sbjct: 68 TSAATITRGSNMLKLMSPDFMEWVKKH 94 >UniRef50_Q1ZEC8 Trp operon repressor n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZEC8_9GAMM Length = 87 Score = 90.9 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 31/86 (36%), Positives = 50/86 (58%) Query: 21 RFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIA 80 F LL + + L+ L+L+ +E A+ R+ + +ELL G+ SQRE+ IA Sbjct: 1 MFTKLLDDVGGAEDLATLVPLLLSAEELNAINGRILVYKELLLGKKSQREIAKAHSISIA 60 Query: 81 TITRGSNSLKAAPVELRQWLEEVLLK 106 TITRGSN+LK+ ++ L+ +L+K Sbjct: 61 TITRGSNNLKSMSSTEKKLLQTLLIK 86 >UniRef50_Q0I456 Trp operon repressor homolog n=3 Tax=Pasteurellaceae RepID=TRPR_HAES1 Length = 106 Score = 89.7 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 37/88 (42%), Positives = 57/88 (64%) Query: 17 QEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELG 76 ++W F+DL++ A++ LL L+LT DER+A+ RV+IV +LL ++QRE++ L Sbjct: 8 EQWNEFLDLMRKAFEQGKEQELLTLLLTADERDAVALRVQIVSQLLDKSLAQREIQQILN 67 Query: 77 AGIATITRGSNSLKAAPVELRQWLEEVL 104 ATITRGSN +K P E W+++ L Sbjct: 68 TSAATITRGSNMIKIMPPEFMDWVKQQL 95 >UniRef50_C0QDI0 Putative repressor TrpR (Repressor of Trp operon) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QDI0_DESAH Length = 119 Score = 89.4 bits (220), Expect = 4e-17, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 1/96 (1%) Query: 13 EQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELK 72 + + V + + + + + TP E L R +++ +L RG M+QR++ Sbjct: 16 KVEKELLKAVVAIARQSDNLEELDLFFQEIFTPGELADLSLRWKLLTDLDRG-MTQRKIA 74 Query: 73 NELGAGIATITRGSNSLKAAPVELRQWLEEVLLKSD 108 + G + ITRGS LK + + L + + D Sbjct: 75 EKYGISLCKITRGSKILKKKNSIVFKILRQAVKAVD 110 >UniRef50_C5SM72 TrpR like protein, YerC/YecD n=2 Tax=Caulobacteraceae RepID=C5SM72_9CAUL Length = 106 Score = 87.8 bits (216), Expect = 9e-17, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 35/86 (40%) Query: 21 RFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIA 80 V L + L+ + TP E A R ++ L +S R++ GA Sbjct: 18 ELVRALLTLKTAEEVRAFLDDLCTPSEIRAFAERFKVARLLDENALSYRDISERTGASTT 77 Query: 81 TITRGSNSLKAAPVELRQWLEEVLLK 106 T+TR + L+ P + + + + L + Sbjct: 78 TVTRVARFLRDMPHKGYRLVIDRLKQ 103 >UniRef50_D1RFK1 TrpR-like protein n=4 Tax=Legionella RepID=D1RFK1_LEGLO Length = 98 Score = 86.7 bits (213), Expect = 2e-16, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 2/93 (2%) Query: 15 RHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNE 74 +H + + + L + TP E EA+ R ++V L +G + R + + Sbjct: 8 KHSALPNLMHAISLLENKEEALQFFTDLCTPAELEAMADRWQVVPLLRQG-IPYRTIHEQ 66 Query: 75 LGAGIATITRGSNSLKAAPVELRQWLEEVLLKS 107 G + TITR + L + + + + L S Sbjct: 67 TGVSVTTITRVARCL-SFGTGGYELIAKKLEVS 98 >UniRef50_C8PXM0 Trp operon repressor n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PXM0_9GAMM Length = 98 Score = 85.9 bits (211), Expect = 4e-16, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 1/79 (1%) Query: 18 EWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGA 77 + V+LL +D +L +LT E++ + R++I L + + QRE+ LG Sbjct: 11 AYDYLVELLSQTDDSDFIREILAALLTEKEQKEIANRIQIF-ALFQQALPQREIAERLGV 69 Query: 78 GIATITRGSNSLKAAPVEL 96 GIAT++RG+ + + Sbjct: 70 GIATVSRGAKAYGQHDINQ 88 >UniRef50_B2I4R3 Trp operon repressor homolog n=3 Tax=Xylella fastidiosa RepID=TRPR_XYLF2 Length = 92 Score = 84.4 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 28/81 (34%), Positives = 42/81 (51%) Query: 15 RHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNE 74 R Q + + +L D +L +LT E E L R+RI ELL SQRE+ ++ Sbjct: 3 REQAFEMLIKILCKTDSTDDMKLILECILTRSEMEDLIDRIRIYNELLNTSNSQREVASK 62 Query: 75 LGAGIATITRGSNSLKAAPVE 95 LG I ITRG+ +L+ ++ Sbjct: 63 LGVSITKITRGAANLQDNNIK 83 >UniRef50_Q4FR44 Trp operon repressor n=2 Tax=Psychrobacter RepID=Q4FR44_PSYA2 Length = 91 Score = 81.7 bits (200), Expect = 6e-15, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 4/84 (4%) Query: 11 MAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRE 70 M+ ++ + ++ D+ LL+ +LT E+ + R+RI + L RG ++QRE Sbjct: 1 MSTDPYRSLSNHLASCDDSVDIDM---LLSALLTDKEQFEIANRIRIFDLLERG-VTQRE 56 Query: 71 LKNELGAGIATITRGSNSLKAAPV 94 + +LG GIAT++RG+ +++ V Sbjct: 57 ISEQLGVGIATVSRGAKAMQIHDV 80 >UniRef50_A6FA32 Putative uncharacterized protein n=1 Tax=Moritella sp. PE36 RepID=A6FA32_9GAMM Length = 105 Score = 78.2 bits (191), Expect = 7e-14, Method: Composition-based stats. Identities = 34/86 (39%), Positives = 51/86 (59%) Query: 21 RFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIA 80 F +LL N + +L L+L+P+E A+ R + +ELL E SQRE+ IA Sbjct: 19 MFKELLLNISGEEDVSLMLPLLLSPEELNAINARTLVYKELLLAEKSQREIARIHNISIA 78 Query: 81 TITRGSNSLKAAPVELRQWLEEVLLK 106 TITRGSN+LKA + +Q L+ +L++ Sbjct: 79 TITRGSNNLKAMSDKEKQLLQTLLIR 104 >UniRef50_C1QCQ6 Trp operon repressor n=2 Tax=Brachyspira RepID=C1QCQ6_9SPIR Length = 100 Score = 78.2 bits (191), Expect = 7e-14, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 1/86 (1%) Query: 20 LRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGI 79 +L + LL + T DE++ + R+RIV LLR +M Q E+ L A + Sbjct: 2 ELLAHILATETDEEFIKKLLGELFTKDEQDMIQQRLRIVT-LLRKKMPQYEIAKHLNASL 60 Query: 80 ATITRGSNSLKAAPVELRQWLEEVLL 105 +ITRG+ LK L +++ L+ Sbjct: 61 CSITRGAKELKKEDSALAVIVDKYLI 86 >UniRef50_A6VT14 Trp operon repressor n=3 Tax=Gammaproteobacteria RepID=A6VT14_MARMS Length = 76 Score = 75.1 bits (183), Expect = 7e-13, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 1/71 (1%) Query: 20 LRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGI 79 + L + L ++LTP+E + +R++I+ L G + QR++ +LG GI Sbjct: 2 KDLIQFLTEVDDESVLEKRLKVLLTPNEINEMVSRLKIIALLDEG-VPQRDIAKQLGVGI 60 Query: 80 ATITRGSNSLK 90 AT+TRGS +LK Sbjct: 61 ATVTRGSRALK 71 >UniRef50_A5WEL3 Trp operon repressor n=1 Tax=Psychrobacter sp. PRwf-1 RepID=A5WEL3_PSYWF Length = 103 Score = 73.2 bits (178), Expect = 2e-12, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 1/82 (1%) Query: 13 EQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELK 72 + + + L + + +L+ +LT E++ + RVRI + L +G ++QR + Sbjct: 2 TTPNPAYKSLLGHLAHLTCDKEIDAVLSALLTDKEQQDIANRVRIFDLLQQG-VTQRVIS 60 Query: 73 NELGAGIATITRGSNSLKAAPV 94 +LG GIAT++RG+ +L+ Sbjct: 61 QQLGVGIATVSRGARALQQQDA 82 >UniRef50_Q0AP79 TrpR like protein, YerC/YecD n=3 Tax=Alphaproteobacteria RepID=Q0AP79_MARMM Length = 105 Score = 72.4 bits (176), Expect = 4e-12, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 34/90 (37%) Query: 18 EWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGA 77 + + L +LTP E + L R R+ L G S RE+ GA Sbjct: 14 DLSALSAAILALKDAGEAERFLRDLLTPGEMKTLTERWRVAGLLAEGGHSYREISEMTGA 73 Query: 78 GIATITRGSNSLKAAPVELRQWLEEVLLKS 107 T+TR + L P + + + L ++ Sbjct: 74 STTTVTRVARFLSQEPWQGYRTILNRLKET 103 >UniRef50_B0RSL2 Putative uncharacterized protein n=3 Tax=Xanthomonas campestris pv. campestris RepID=B0RSL2_XANCB Length = 134 Score = 71.6 bits (174), Expect = 7e-12, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 8 SAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMS 67 + + + L L + TP E EA+ R R+V L++G + Sbjct: 32 APRESTDVAASLKMLSEALACLEAPGAVEAFLRDLCTPAELEAMSDRWRVVPLLVKG-VP 90 Query: 68 QRELKNELGAGIATITRGSNSLKA 91 RE+ + + TI R + +L+ Sbjct: 91 YREIHDLTQVSVTTIGRVARTLEH 114 >UniRef50_C6YWN7 Putative uncharacterized protein n=1 Tax=Francisella philomiragia subsp. philomiragia ATCC 25015 RepID=C6YWN7_9GAMM Length = 98 Score = 71.6 bits (174), Expect = 8e-12, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 3/81 (3%) Query: 11 MAEQRH--QEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQ 68 M+E ++ + ++ K+ + L + TP + A+ R R+V+EL + + Sbjct: 1 MSEIKNNEENLQNLYEVFKSFESAEEAKLFLEDLCTPVDLMAMAARWRVVKEL-KKDKPY 59 Query: 69 RELKNELGAGIATITRGSNSL 89 R++ E G + TI+R + L Sbjct: 60 RQIHAETGVSLTTISRVARCL 80 >UniRef50_B2I5Y3 TrpR like protein, YerC/YecD n=17 Tax=Gammaproteobacteria RepID=B2I5Y3_XYLF2 Length = 112 Score = 70.5 bits (171), Expect = 1e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 1/69 (1%) Query: 35 HLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPV 94 L L + TP E EAL R R+V LL+G R++ + G + TI R + L+ Sbjct: 33 VLAFLRDLCTPAELEALADRWRVVPLLLQGR-PYRDIHDHTGISVTTIGRVARCLEHGTG 91 Query: 95 ELRQWLEEV 103 L+ Sbjct: 92 GYAAVLQAQ 100 >UniRef50_C7NG11 TrpR-related protein YerC/YecD n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NG11_KYTSD Length = 107 Score = 67.8 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 1/72 (1%) Query: 20 LRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGI 79 +L + + D LL + TP EREAL R +V L G MS R + G + Sbjct: 17 RELARVLASMGEADEIEALLTDLCTPAEREALTDRWAVVPLLAEG-MSYRAIHEATGVSV 75 Query: 80 ATITRGSNSLKA 91 T+ R + ++ Sbjct: 76 TTVGRVARCVED 87 >UniRef50_C4F7F1 Putative uncharacterized protein n=2 Tax=Collinsella RepID=C4F7F1_9ACTN Length = 118 Score = 66.6 bits (161), Expect = 2e-10, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 1/73 (1%) Query: 18 EWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGA 77 + + V+ + D L + TP E R+++ L GE E++ GA Sbjct: 31 DVDQLVEAFQLVEGPDEIRAFLTDLCTPREICDFAQRLQVARYLDEGE-PYVEVQARTGA 89 Query: 78 GIATITRGSNSLK 90 T++R S SL Sbjct: 90 SSTTVSRVSKSLN 102 >UniRef50_B2KCM2 TrpR like protein, YerC/YecD n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KCM2_ELUMP Length = 90 Score = 65.5 bits (158), Expect = 5e-10, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 1/77 (1%) Query: 30 YQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSL 89 L + TP E L R + + L G+ S R + G T+ R + L Sbjct: 15 KNEKEVEKFLKDICTPSELRDLQERWLVAQMLEEGD-SYRGINEATGISTTTVGRVARFL 73 Query: 90 KAAPVELRQWLEEVLLK 106 + + E + K Sbjct: 74 NDENYGGYKLILERVKK 90 >UniRef50_A4EAH7 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EAH7_9ACTN Length = 99 Score = 65.1 bits (157), Expect = 6e-10, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 1/86 (1%) Query: 18 EWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGA 77 + + V + L + TP E L R+++ L GE E++ GA Sbjct: 11 DVKQLVHAFSLLDDENDIQAFLTDICTPREICDLSQRLQVARYLDEGE-PYVEVQARTGA 69 Query: 78 GIATITRGSNSLKAAPVELRQWLEEV 103 T++R S +L R+ L ++ Sbjct: 70 SSTTVSRVSKALNGEYGGYRKILIKL 95 >UniRef50_D0WGN1 TrpR protein n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WGN1_9ACTN Length = 115 Score = 59.7 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 1/80 (1%) Query: 11 MAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRE 70 M++ R E + +L D LL +LT E + R+ + L G Sbjct: 6 MSDLRTPEVESLLKVLVTLDDPDQVYALLEDLLTIREIKETSQRLSVARLLADGR-PYTT 64 Query: 71 LKNELGAGIATITRGSNSLK 90 + E GA TI R S +L Sbjct: 65 IAQETGASATTIARVSKALN 84 >UniRef50_C2HG06 Sporulation protein YerC n=2 Tax=Finegoldia magna RepID=C2HG06_PEPMA Length = 129 Score = 59.3 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 49/110 (44%), Gaps = 4/110 (3%) Query: 1 MAQQSPYSAAMAEQ--RHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIV 58 + Q++ S MAE + + F D + D + T E ++ R+ + Sbjct: 12 VTQKNLRSKIMAEINIKDKTLNEFFDAIMMLKGRDELQRFFEDVCTMRELNSISQRLEVA 71 Query: 59 EELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLLKSD 108 + LL+ + E++ + GA ATI+R + SL+ + + + + L+ + Sbjct: 72 K-LLKIRKTYSEIEKDTGASTATISRVNRSLQNG-AQGYELVLDNLIAKN 119 >UniRef50_C7N1D6 TrpR-related protein YerC/YecD n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N1D6_SLAHD Length = 105 Score = 58.5 bits (140), Expect = 7e-08, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 1/80 (1%) Query: 11 MAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRE 70 M+ R QE +++L D L+ + T E + R+ + + L +G+ Sbjct: 1 MSNLRTQEVEMLLEVLSAMDDKDQLYALIEDLFTIREIKETSQRLSVAQLLSQGK-PYTA 59 Query: 71 LKNELGAGIATITRGSNSLK 90 + GA TI R S +L Sbjct: 60 IAEITGASATTIARVSKALN 79 >UniRef50_C8WRX5 TrpR like protein, YerC/YecD n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRX5_ALIAD Length = 109 Score = 58.2 bits (139), Expect = 7e-08, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 2/95 (2%) Query: 10 AMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQR 69 A+ E + D + T E E+L R + L G + Sbjct: 5 ALERLNESEVRELFRAILALQNEDECYRFFEDLCTVGEVESLAQRFAVARMLREGA-TYH 63 Query: 70 ELKNELGAGIATITRGSNSLKAAPVELRQWLEEVL 104 ++ GA ATI+R L + + + + L Sbjct: 64 AIEEATGASTATISRVKRCL-HYGADGYRIILDRL 97 >UniRef50_B7GFU8 Trp repressor n=113 Tax=Bacteria RepID=B7GFU8_ANOFW Length = 111 Score = 57.0 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 1/85 (1%) Query: 11 MAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRE 70 + + R +E + + + + + + T +E +AL R+ + L G + + Sbjct: 9 INKLRGRELDQLFRAILSLQDLEECYRFFDDLCTVNEIQALAQRLEVARMLREGY-TYHK 67 Query: 71 LKNELGAGIATITRGSNSLKAAPVE 95 ++ E GA ATI+R L Sbjct: 68 IETETGASTATISRVKRCLNYGNDA 92 >UniRef50_C9RVM9 TrpR like protein, YerC/YecD n=56 Tax=Firmicutes RepID=C9RVM9_GEOSY Length = 111 Score = 56.6 bits (135), Expect = 2e-07, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 1/85 (1%) Query: 11 MAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRE 70 + + R +E + + + + + + T +E +AL R+ + L G + + Sbjct: 3 IDKLRGRELDQLFKAILSLRDLEECYRFFDDLCTVNEIQALAQRLEVARMLREGY-TYHK 61 Query: 71 LKNELGAGIATITRGSNSLKAAPVE 95 ++ E GA ATI+R L Sbjct: 62 IETETGASTATISRVKRCLNYGNDA 86 >UniRef50_B0TDN6 Trpr-like protein yerc/yecd, putative n=22 Tax=Bacteria RepID=B0TDN6_HELMI Length = 106 Score = 55.1 bits (131), Expect = 6e-07, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 36/94 (38%), Gaps = 2/94 (2%) Query: 11 MAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRE 70 +++ + R + + D + T E +AL R+ + + L + + Sbjct: 3 ISKLKDPALDRLFEAILLLGDVDECYRFFEDICTVAELKALAQRLDVAKMLEQDA-TYTH 61 Query: 71 LKNELGAGIATITRGSNSLKAAPVELRQWLEEVL 104 + + GA ATI+R L + + + + L Sbjct: 62 IAEKTGASPATISRVKRCL-IYGADGYRLILQRL 94 >UniRef50_A8SES0 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SES0_9FIRM Length = 97 Score = 55.1 bits (131), Expect = 7e-07, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 35/98 (35%), Gaps = 1/98 (1%) Query: 11 MAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRE 70 MA+ + L + + E A+ R I ELL + E Sbjct: 1 MAKDHPTGNSGLYRAFLQLKTPEECYRFLQDVCSYSELSAMEQRYNI-AELLADKCIYTE 59 Query: 71 LKNELGAGIATITRGSNSLKAAPVELRQWLEEVLLKSD 108 + ++ GA A I+R S L A LR LE +D Sbjct: 60 IMDKTGASSAIISRVSRVLSADDSVLRALLEAEKKAAD 97 >UniRef50_A5CZ45 Uncharacterized protein conserved in bacteria n=6 Tax=Bacteria RepID=A5CZ45_PELTS Length = 101 Score = 54.7 bits (130), Expect = 9e-07, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 2/95 (2%) Query: 13 EQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELK 72 + + + R + + D + T E ++L R+ + + L + + E+ Sbjct: 5 KLKDELLDRLFEAVLVLRNIDECYRFFEDICTVAELKSLAQRLEVAKML-QANRTYGEIA 63 Query: 73 NELGAGIATITRGSNSLKAAPVELRQWLEEVLLKS 107 + GA ATI+R +L + + + E L S Sbjct: 64 SRTGASTATISRVKRALNYG-ADGYKLVLERLASS 97 >UniRef50_Q7BVT7 Uncharacterized protein yerC n=27 Tax=Bacteria RepID=YERC_BACSU Length = 104 Score = 54.7 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 1/85 (1%) Query: 11 MAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRE 70 + + R +E + + + + + + + T +E ++L R+ + L G + + Sbjct: 3 IDKLRGKELDQLFNSILSLKDLEECYRFFDDLCTINEIQSLAQRLEVARMLREGN-TYHK 61 Query: 71 LKNELGAGIATITRGSNSLKAAPVE 95 ++ E GA ATI+R L Sbjct: 62 IETETGASTATISRVKRCLNYGNDA 86 >UniRef50_C9LTV5 TrpR protein n=2 Tax=Bacteria RepID=C9LTV5_9FIRM Length = 114 Score = 54.3 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 1/96 (1%) Query: 13 EQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELK 72 + R++ + + + + + T E +A+ R+ + L RG + + Sbjct: 7 KLRNELSDQLMAAVLLLRNTEESYAFFEDICTVAELKAMAQRLEVASMLRRGN-TYDAIV 65 Query: 73 NELGAGIATITRGSNSLKAAPVELRQWLEEVLLKSD 108 GA ATI+R L LE + K D Sbjct: 66 ERTGASTATISRVKRCLNYGADGYELVLERMRQKKD 101 >UniRef50_C4V2I1 Sporulation protein YerC n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V2I1_9FIRM Length = 108 Score = 54.3 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 1/89 (1%) Query: 20 LRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGI 79 + + + D + T E A+ R+ + L G + E+ GA Sbjct: 12 DQLFRAVLSLQTVDECYQFFEDLCTIGELRAMAQRLDVARMLY-GGNTYDEVVAHTGAST 70 Query: 80 ATITRGSNSLKAAPVELRQWLEEVLLKSD 108 ATI+R L L+ L + Sbjct: 71 ATISRVKRCLNYGADGYTLVLKNGCLSVN 99 >UniRef50_B2A5W3 TrpR like protein, YerC/YecD n=4 Tax=Bacteria RepID=B2A5W3_NATTJ Length = 122 Score = 53.9 bits (128), Expect = 1e-06, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 20 LRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGI 79 +F + + + + T E +AL R ++ + L G + ++++ + GA Sbjct: 35 DQFYKAILSLETLEDCYSFFEDVATVTEIKALAQRFQVAKMLKEGY-TYQDIEEKTGAST 93 Query: 80 ATITRGSNSL 89 ATI+R L Sbjct: 94 ATISRVKRFL 103 >UniRef50_UPI00016C0C65 hypothetical protein Epulo_04650 n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0C65 Length = 88 Score = 53.9 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 27/70 (38%), Gaps = 1/70 (1%) Query: 20 LRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGI 79 + + + TP+E A R+ + LL+ + + E++ A Sbjct: 9 KDLYXAILKLKTIEECDLFFKDLCTPNELNAFAQRLEVARLLLQNK-TYVEIQQVTNAST 67 Query: 80 ATITRGSNSL 89 TI+R + ++ Sbjct: 68 TTISRVNRTI 77 >UniRef50_C8WKR5 TrpR like protein, YerC/YecD n=2 Tax=Coriobacteriaceae RepID=C8WKR5_EGGLE Length = 100 Score = 53.5 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 1/79 (1%) Query: 11 MAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRE 70 M++ R E + + D+ LL + T E + R+ + +L G+ S Sbjct: 1 MSDLRTPEVEDLLRVFAALDDEDVIFSLLEDLFTIREIKETSQRLAVARQLDAGK-SYSA 59 Query: 71 LKNELGAGIATITRGSNSL 89 ++ GA TI R S L Sbjct: 60 IEEATGASATTIARVSKCL 78 >UniRef50_D2RJP7 TrpR like protein, YerC/YecD n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RJP7_ACIFE Length = 100 Score = 52.4 bits (124), Expect = 4e-06, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 1/80 (1%) Query: 11 MAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRE 70 +A +E + D L L + TP+E +AL R+ + L RGE + Sbjct: 2 VAGLNERELKQLAKAFTLLKDLDGSLAFLEDICTPNELKALSQRLEVAVRLHRGEN-YAK 60 Query: 71 LKNELGAGIATITRGSNSLK 90 + + GA T++R + L Sbjct: 61 IVKDTGASSTTVSRVNRCLN 80 >UniRef50_C7H5T0 TrpR protein n=2 Tax=Faecalibacterium prausnitzii RepID=C7H5T0_9FIRM Length = 102 Score = 52.0 bits (123), Expect = 6e-06, Method: Composition-based stats. Identities = 13/88 (14%), Positives = 34/88 (38%), Gaps = 1/88 (1%) Query: 15 RHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNE 74 +++ D + + + + T E + R+ + LL G + ++ E Sbjct: 8 KNETVDALFDAILSLESREECYAFFEDLCTVKEISDMAQRLEAAKLLL-GGCTYDQIVKE 66 Query: 75 LGAGIATITRGSNSLKAAPVELRQWLEE 102 + ATI+R + ++ + +E+ Sbjct: 67 VEISTATISRINRCIQYGTGGYQSVIEK 94 >UniRef50_B8FP15 TrpR like protein, YerC/YecD n=11 Tax=Firmicutes RepID=B8FP15_DESHD Length = 113 Score = 51.2 bits (121), Expect = 9e-06, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 2/94 (2%) Query: 15 RHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNE 74 R D + + + T E ++L R+ + + LL ++ + Sbjct: 18 RDSSTDALFDAILLLKDREECYRFFQDIATVAEIKSLAQRLEVAK-LLEKNVTYTTIAQS 76 Query: 75 LGAGIATITRGSNSLKAAPVELRQWLEEVLLKSD 108 GA ATI+R L + Q + + L + + Sbjct: 77 TGASTATISRVKRCL-YFGADGYQMVLKRLEEKE 109 >UniRef50_C7H8F3 TrpR protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H8F3_9FIRM Length = 99 Score = 51.2 bits (121), Expect = 9e-06, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 1/96 (1%) Query: 11 MAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRE 70 MA+ L + L + + E A+ R I E+L+ + S Sbjct: 1 MAKDHPTGESGLYSALLELKTPEECYRFLQDVCSYAELSAMEQRYNIAEKLVNKQ-SYTS 59 Query: 71 LKNELGAGIATITRGSNSLKAAPVELRQWLEEVLLK 106 + +GA A I+R S + LR+ LEE + Sbjct: 60 IMGNIGASSAIISRVSRVISKDDSVLRRLLEEKAEQ 95 >UniRef50_C0W9Z1 Predicted protein n=1 Tax=Acidaminococcus sp. D21 RepID=C0W9Z1_9FIRM Length = 98 Score = 51.2 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 1/92 (1%) Query: 17 QEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELG 76 +E R + + L L + TP+E +AL R+ + L RGE ++ N+ G Sbjct: 8 RELHRLAHAFILLKNDRMCLDFLEDICTPNELKALSQRLEVAVRLHRGEN-YAKIVNDTG 66 Query: 77 AGIATITRGSNSLKAAPVELRQWLEEVLLKSD 108 A T++R + L R+ + +L + + Sbjct: 67 ASSTTVSRVNRCLNYGAGGYRKVIPMLLEEGE 98 >UniRef50_A9NHU1 Putative uncharacterized protein n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NHU1_ACHLI Length = 94 Score = 51.2 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 36/92 (39%), Gaps = 1/92 (1%) Query: 11 MAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRE 70 M++ + + + + +LT E EA+ R+ + L+ G+ + + Sbjct: 1 MSKLKSDVNDLLFESILKLETLEDAYDFFEDLLTMKEIEAMSQRILAAKRLIEGK-TYDQ 59 Query: 71 LKNELGAGIATITRGSNSLKAAPVELRQWLEE 102 + E T++R S ++ ++ L + Sbjct: 60 ITEETKISSTTLSRVSTCVRYGTGGYKKVLSK 91 >UniRef50_D1PNL9 TrpR protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNL9_9FIRM Length = 105 Score = 46.6 bits (109), Expect = 3e-04, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 8/106 (7%) Query: 1 MAQQSPYSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEE 60 M Q+P Q+ + + + D + + + E L R + Sbjct: 1 MRPQTP-------QQEERSTALYEAILRLNTLDECIRFFDDLCAVTELRTLEQRYAVAGC 53 Query: 61 LLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLLK 106 LL+G++ E++ E GA AT++R + L + + E L + Sbjct: 54 LLQGKV-YSEIRRETGASSATVSRVNRMLNYGTGSVAASVREDLAR 98 >UniRef50_D1Y7S3 TrpR-like protein n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y7S3_9BACT Length = 97 Score = 46.6 bits (109), Expect = 3e-04, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 1/80 (1%) Query: 11 MAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRE 70 M + RF + + + T E + + R + + G Q E Sbjct: 1 MTHLNSELIDRFYLAILALKTPEECAVFFEGLRTVTEIQNMAQRPEVAQLPADGRNYQ-E 59 Query: 71 LKNELGAGIATITRGSNSLK 90 + N G ATI+R + L+ Sbjct: 60 ITNGAGVSAATISRVNRCLR 79 >UniRef50_P12254 RNA polymerase sigma-K factor n=23 Tax=Bacteria RepID=RPSK_BACSU Length = 294 Score = 43.9 bits (102), Expect = 0.001, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 5/79 (6%) Query: 20 LRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGI 79 +D ++ + + ++ +L E+E + R L+ E +QRE+ ELG Sbjct: 207 EDVIDTIQLNMELEKVKQYID-ILDDREKEVIVGR---FGLDLKKEKTQREIAKELGISR 262 Query: 80 ATITRGSN-SLKAAPVELR 97 + ++R +L E Sbjct: 263 SYVSRIEKRALMKMFHEFY 281 >UniRef50_A5ZVS0 RNA polymerase sigma factor n=2 Tax=Ruminococcus RepID=A5ZVS0_9FIRM Length = 114 Score = 42.4 bits (98), Expect = 0.004, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 7/73 (9%) Query: 23 VDLLKNAYQNDLHLPLLN---LMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGI 79 VD+++ L + +LTP E + + R + E EM+QRE+ ++L Sbjct: 39 VDIVEEYSTRQDIRFLFSSMKDILTPKEYQVICCRYGLFE---NNEMTQREIADQLHISR 95 Query: 80 ATITRG-SNSLKA 91 + ++R N+LK Sbjct: 96 SYVSRIEKNALKK 108 >UniRef50_Q13WC2 Putative Transcriptional regulator, Fis family n=2 Tax=Burkholderia xenovorans LB400 RepID=Q13WC2_BURXL Length = 1284 Score = 39.7 bits (91), Expect = 0.033, Method: Composition-based stats. Identities = 8/29 (27%), Positives = 21/29 (72%) Query: 54 RVRIVEELLRGEMSQRELKNELGAGIATI 82 R++++ L +G++SQR++ ++G +T+ Sbjct: 819 RLKVIHLLEKGDLSQRQIARQMGMSYSTV 847 >UniRef50_P62180 RNA polymerase sigma-28 factor n=146 Tax=Firmicutes RepID=RP28_BACCR Length = 237 Score = 38.9 bits (89), Expect = 0.051, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 34/80 (42%), Gaps = 5/80 (6%) Query: 20 LRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGI 79 +D+++ + + + ++ +L E+E + R L E +QRE+ LG Sbjct: 153 EDVIDMIQLSMELEKIKEYID-ILDEREKEVIVKR---FGLGLDKEKTQREIAKALGISR 208 Query: 80 ATITRGSN-SLKAAPVELRQ 98 + ++R +L E + Sbjct: 209 SYVSRIEKRALMKMFHEFVR 228 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.304 0.133 0.331 Lambda K H 0.267 0.0417 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 480,457,594 Number of Sequences: 3077464 Number of extensions: 13495332 Number of successful extensions: 69750 Number of sequences better than 1.0e-01: 64 Number of HSP's better than 0.1 without gapping: 81 Number of HSP's successfully gapped in prelim test: 37 Number of HSP's that attempted gapping in prelim test: 69634 Number of HSP's gapped (non-prelim): 122 length of query: 108 length of database: 1,040,396,356 effective HSP length: 76 effective length of query: 32 effective length of database: 806,509,092 effective search space: 25808290944 effective search space used: 25808290944 T: 11 A: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.9 bits) S2: 87 (38.1 bits)