Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP33599
DateThu Jan 5 11:52:22 GMT 2012
Unique Job ID59ea08c71b61b1b6

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d2fug41
Top template information
Fold:HydB/Nqo4-like
Superfamily:HydB/Nqo4-like
Family:Nqo4-like
Confidence and coverage
Confidence:100.0% Coverage: 62%
370 residues ( 62% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
538 residues ( 90%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MTDLTAQEPAWQTRDHLDDPVIGELRNRFGPDAFTVQATRTGVPVVWIKREQLLEVGDFL
Secondary structure 
SS confidence 
Disorder  ??????????????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  KKLPKPYVMLFDLHGMDERLRTHREGLPAADFSVFYHLISIDRNRDIMLKVALAENDLHV
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  PTFTKLFPNANWYERETWDLFGITFDGHPNLRRIMMPQTWKGHPLRKDYPARATEFSPFE
Secondary structure 
SS confidence 
Disorder 
???????
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  LTKAKQDLEMEALTFKPEEWGMKRGTENEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVD
Secondary structure 
SS confidence 
Disorder 
??????
?????????????
?
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  CVPDIGYHHRGAEKMGERQSWHSYIPYTDRIEYLGGCVNEMPYVLAVEKLAGITVPDRVN
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  VIRVMLSELFRINSHLLYISTFIQDVGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFR
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  IGGVAHDLPRGWDRLLREFLDWMPKRLASYEKAALQNTILKGRSQGVAAYGAKEALEWGT
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  TGAGLRATGIDFDVRKARPYSGYENFDFEIPVGGGVSDCYTRVMLKVEELRQSLRILEQC
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  LNNMPEGPFKADHPLTTPPPKERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGIN
Secondary structure 
SS confidence 
Disorder 
??
??
Disorder confidence 
 
   .........550.........560.........570.........580.........590......
Sequence  SYYLTSDGSTMSYRTRVRTPSFAHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR
Secondary structure 
SS confidence 
Disorder 
????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2fug chain 4 domain 1

3D model

Region: 221 - 596
Aligned: 370
Modelled: 376
Confidence: 100.0%
Identity: 42%
Fold: HydB/Nqo4-like
Superfamily: HydB/Nqo4-like
Family: Nqo4-like

Phyre2

PDB 2fug chain 4

3D model

Region: 221 - 596
Aligned: 370
Modelled: 376
Confidence: 100.0%
Identity: 42%
PDB header:oxidoreductase
Chain: 4: PDB Molecule:nadh-quinone oxidoreductase chain 4;
PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus

Phyre2

PDB 1frf chain L

3D model

Region: 205 - 594
Aligned: 364
Modelled: 367
Confidence: 100.0%
Identity: 15%
Fold: HydB/Nqo4-like
Superfamily: HydB/Nqo4-like
Family: Nickel-iron hydrogenase, large subunit

Phyre2

PDB 1e3d chain B

3D model

Region: 205 - 594
Aligned: 363
Modelled: 367
Confidence: 100.0%
Identity: 16%
Fold: HydB/Nqo4-like
Superfamily: HydB/Nqo4-like
Family: Nickel-iron hydrogenase, large subunit

Phyre2

PDB 1yq9 chain H domain 1

3D model

Region: 213 - 594
Aligned: 356
Modelled: 360
Confidence: 100.0%
Identity: 15%
Fold: HydB/Nqo4-like
Superfamily: HydB/Nqo4-like
Family: Nickel-iron hydrogenase, large subunit

Phyre2

PDB 1h2a chain L

3D model

Region: 214 - 594
Aligned: 355
Modelled: 359
Confidence: 100.0%
Identity: 14%
PDB header:oxidoreductase
Chain: L: PDB Molecule:hydrogenase;
PDBTitle: single crystals of hydrogenase from desulfovibrio vulgaris

Phyre2

PDB 2wpn chain B

3D model

Region: 210 - 594
Aligned: 353
Modelled: 358
Confidence: 100.0%
Identity: 19%
PDB header:oxidoreductase
Chain: B: PDB Molecule:periplasmic [nifese] hydrogenase, large subunit,
PDBTitle: structure of the oxidised, as-isolated nifese hydrogenase2 from d. vulgaris hildenborough

Phyre2

PDB 1cc1 chain L

3D model

Region: 212 - 594
Aligned: 351
Modelled: 356
Confidence: 100.0%
Identity: 17%
Fold: HydB/Nqo4-like
Superfamily: HydB/Nqo4-like
Family: Nickel-iron hydrogenase, large subunit

Phyre2

PDB 3myr chain B

3D model

Region: 214 - 594
Aligned: 360
Modelled: 364
Confidence: 100.0%
Identity: 16%
PDB header:oxidoreductase
Chain: B: PDB Molecule:nickel-dependent hydrogenase large subunit;
PDBTitle: crystal structure of [nife] hydrogenase from allochromatium vinosum in2 its ni-a state

Phyre2

PDB 1wui chain L domain 1

3D model

Region: 214 - 594
Aligned: 353
Modelled: 359
Confidence: 100.0%
Identity: 15%
Fold: HydB/Nqo4-like
Superfamily: HydB/Nqo4-like
Family: Nickel-iron hydrogenase, large subunit

Phyre2

PDB 2fug chain 5 domain 1

3D model

Region: 22 - 175
Aligned: 144
Modelled: 150
Confidence: 100.0%
Identity: 34%
Fold: Nqo5-like
Superfamily: Nqo5-like
Family: Nqo5-like

Phyre2

PDB 3mcr chain A

3D model

Region: 5 - 151
Aligned: 140
Modelled: 147
Confidence: 100.0%
Identity: 29%
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh dehydrogenase, subunit c;
PDBTitle: crystal structure of nadh dehydrogenase subunit c (tfu_2693) from2 thermobifida fusca yx-er1 at 2.65 a resolution

Phyre2

PDB 1v97 chain A domain 4

3D model

Region: 539 - 589
Aligned: 51
Modelled: 51
Confidence: 45.2%
Identity: 2%
Fold: CO dehydrogenase flavoprotein C-domain-like
Superfamily: CO dehydrogenase flavoprotein C-terminal domain-like
Family: CO dehydrogenase flavoprotein C-terminal domain-like

Phyre2

PDB 2ibp chain B

3D model

Region: 204 - 267
Aligned: 59
Modelled: 64
Confidence: 29.2%
Identity: 15%
PDB header:transferase
Chain: B: PDB Molecule:citrate synthase;
PDBTitle: crystal structure of citrate synthase from pyrobaculum aerophilum

Phyre2

PDB 1ghh chain A

3D model

Region: 3 - 62
Aligned: 59
Modelled: 60
Confidence: 25.7%
Identity: 15%
Fold: DNA damage-inducible protein DinI
Superfamily: DNA damage-inducible protein DinI
Family: DNA damage-inducible protein DinI

Phyre2

PDB 1ffv chain C domain 1

3D model

Region: 527 - 589
Aligned: 62
Modelled: 63
Confidence: 24.6%
Identity: 10%
Fold: CO dehydrogenase flavoprotein C-domain-like
Superfamily: CO dehydrogenase flavoprotein C-terminal domain-like
Family: CO dehydrogenase flavoprotein C-terminal domain-like

Phyre2

PDB 2ntk chain A domain 1

3D model

Region: 253 - 274
Aligned: 22
Modelled: 22
Confidence: 23.4%
Identity: 23%
Fold: Ntn hydrolase-like
Superfamily: Archaeal IMP cyclohydrolase PurO
Family: Archaeal IMP cyclohydrolase PurO

Phyre2

PDB 1ufi chain D

3D model

Region: 310 - 319
Aligned: 10
Modelled: 10
Confidence: 23.3%
Identity: 40%
PDB header:dna binding protein
Chain: D: PDB Molecule:major centromere autoantigen b;
PDBTitle: crystal structure of the dimerization domain of human cenp-b

Phyre2

PDB 1ufi chain A

3D model

Region: 310 - 319
Aligned: 10
Modelled: 10
Confidence: 23.0%
Identity: 40%
Fold: ROP-like
Superfamily: Dimerisation domain of CENP-B
Family: Dimerisation domain of CENP-B

Phyre2

PDB 2qsw chain A domain 1

3D model

Region: 13 - 63
Aligned: 51
Modelled: 51
Confidence: 21.4%
Identity: 14%
Fold: Ferredoxin-like
Superfamily: ACT-like
Family: NIL domain-like

Phyre2
1
d2fug41
2
c2fug4_
3
d1frfl_
4
d1e3db_
5
d1yq9h1
6
c1h2aL_
7
c2wpnB_
8
d1cc1l_
9
c3myrB_
10
d1wuil1
11
d2fug51
12
c3mcrA_
13
d1v97a4
14
c2ibpB_
15
d1ghha_
16
d1ffvc1
17
d2ntka1
18
c1ufiD_
19
d1ufia_
20
d2qswa1
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2fug41
100.0 42 Fold:HydB/Nqo4-like
Superfamily:HydB/Nqo4-like
Family:Nqo4-like
2c2fug4_
100.0 42 PDB header:oxidoreductase
Chain: 4: PDB Molecule:nadh-quinone oxidoreductase chain 4;
PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus
3d1frfl_
100.0 15 Fold:HydB/Nqo4-like
Superfamily:HydB/Nqo4-like
Family:Nickel-iron hydrogenase, large subunit
4d1e3db_
100.0 16 Fold:HydB/Nqo4-like
Superfamily:HydB/Nqo4-like
Family:Nickel-iron hydrogenase, large subunit
5d1yq9h1
100.0 15 Fold:HydB/Nqo4-like
Superfamily:HydB/Nqo4-like
Family:Nickel-iron hydrogenase, large subunit
6c1h2aL_
100.0 14 PDB header:oxidoreductase
Chain: L: PDB Molecule:hydrogenase;
PDBTitle: single crystals of hydrogenase from desulfovibrio vulgaris
7c2wpnB_
100.0 19 PDB header:oxidoreductase
Chain: B: PDB Molecule:periplasmic [nifese] hydrogenase, large subunit,
PDBTitle: structure of the oxidised, as-isolated nifese hydrogenase2 from d. vulgaris hildenborough
8d1cc1l_
100.0 17 Fold:HydB/Nqo4-like
Superfamily:HydB/Nqo4-like
Family:Nickel-iron hydrogenase, large subunit
9c3myrB_
100.0 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:nickel-dependent hydrogenase large subunit;
PDBTitle: crystal structure of [nife] hydrogenase from allochromatium vinosum in2 its ni-a state
10d1wuil1
100.0 15 Fold:HydB/Nqo4-like
Superfamily:HydB/Nqo4-like
Family:Nickel-iron hydrogenase, large subunit
11d2fug51
100.0 34 Fold:Nqo5-like
Superfamily:Nqo5-like
Family:Nqo5-like
12c3mcrA_
100.0 29 PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh dehydrogenase, subunit c;
PDBTitle: crystal structure of nadh dehydrogenase subunit c (tfu_2693) from2 thermobifida fusca yx-er1 at 2.65 a resolution
13d1v97a4
45.2 2 Fold:CO dehydrogenase flavoprotein C-domain-like
Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like
Family:CO dehydrogenase flavoprotein C-terminal domain-like
14c2ibpB_
29.2 15 PDB header:transferase
Chain: B: PDB Molecule:citrate synthase;
PDBTitle: crystal structure of citrate synthase from pyrobaculum aerophilum
15d1ghha_
25.7 15 Fold:DNA damage-inducible protein DinI
Superfamily:DNA damage-inducible protein DinI
Family:DNA damage-inducible protein DinI
16d1ffvc1
24.6 10 Fold:CO dehydrogenase flavoprotein C-domain-like
Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like
Family:CO dehydrogenase flavoprotein C-terminal domain-like
17d2ntka1
23.4 23 Fold:Ntn hydrolase-like
Superfamily:Archaeal IMP cyclohydrolase PurO
Family:Archaeal IMP cyclohydrolase PurO
18c1ufiD_
23.3 40 PDB header:dna binding protein
Chain: D: PDB Molecule:major centromere autoantigen b;
PDBTitle: crystal structure of the dimerization domain of human cenp-b
19d1ufia_
23.0 40 Fold:ROP-like
Superfamily:Dimerisation domain of CENP-B
Family:Dimerisation domain of CENP-B
20d2qswa1
21.4 14 Fold:Ferredoxin-like
Superfamily:ACT-like
Family:NIL domain-like
21d2zpya3
not modelled 20.3 9 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:First domain of FERM
22d1ni2a3
not modelled 19.6 10 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:First domain of FERM
23d2qrra1
not modelled 19.4 13 Fold:Ferredoxin-like
Superfamily:ACT-like
Family:NIL domain-like
24d1ef1a3
not modelled 19.0 9 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:First domain of FERM
25c2w3zA_
not modelled 18.6 7 PDB header:hydrolase
Chain: A: PDB Molecule:putative deacetylase;
PDBTitle: structure of a streptococcus mutans ce4 esterase
26d2c5sa2
not modelled 18.4 10 Fold:THUMP domain
Superfamily:THUMP domain-like
Family:THUMP domain
27d1vqza1
not modelled 16.8 17 Fold:SufE/NifU
Superfamily:SufE/NifU
Family:SP1160 C-terminal domain-like
28c2dgyA_
not modelled 16.6 9 PDB header:translation
Chain: A: PDB Molecule:mgc11102 protein;
PDBTitle: solution structure of the eukaryotic initiation factor 1a2 in mgc11102 protein
29c3kfwX_
not modelled 16.0 36 PDB header:structural genomics, unknown function
Chain: X: PDB Molecule:uncharacterized protein;
PDBTitle: uncharacterized protein rv0674 from mycobacterium tuberculosis
30c2f3oB_
not modelled 15.9 18 PDB header:unknown function
Chain: B: PDB Molecule:pyruvate formate-lyase 2;
PDBTitle: crystal structure of a glycyl radical enzyme from archaeoglobus2 fulgidus
31c2g40A_
not modelled 15.4 29 PDB header:unknown function
Chain: A: PDB Molecule:conserved hypothetical protein;
PDBTitle: crystal structure of a duf162 family protein (dr_1909) from2 deinococcus radiodurans at 1.70 a resolution
32d2g40a1
not modelled 15.4 29 Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:YkgG-like
33d1u07a_
not modelled 15.4 7 Fold:TolA/TonB C-terminal domain
Superfamily:TolA/TonB C-terminal domain
Family:TonB
34c3kwlA_
not modelled 15.3 18 PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a hypothetical protein from helicobacter pylori
35d1gg3a3
not modelled 15.2 15 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:First domain of FERM
36c2cveA_
not modelled 14.4 6 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ttha1053;
PDBTitle: crystal structure of a conserved hypothetical protein tt1547 from2 thermus thermophilus hb8
37c3hrdC_
not modelled 14.1 12 PDB header:oxidoreductase
Chain: C: PDB Molecule:nicotinate dehydrogenase fad-subunit;
PDBTitle: crystal structure of nicotinate dehydrogenase
38c2dnwA_
not modelled 12.9 17 PDB header:transport protein
Chain: A: PDB Molecule:acyl carrier protein;
PDBTitle: solution structure of rsgi ruh-059, an acp domain of acyl2 carrier protein, mitochondrial [precursor] from human cdna
39c2oqkA_
not modelled 12.8 6 PDB header:translation
Chain: A: PDB Molecule:putative translation initiation factor eif-1a;
PDBTitle: crystal structure of putative cryptosporidium parvum translation2 initiation factor eif-1a
40c1wvtA_
not modelled 12.6 11 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein st2180;
PDBTitle: crystal structure of uncharacterized protein st2180 from sulfolobus2 tokodaii
41c2grxC_
not modelled 12.0 4 PDB header:metal transport
Chain: C: PDB Molecule:protein tonb;
PDBTitle: crystal structure of tonb in complex with fhua, e. coli2 outer membrane receptor for ferrichrome
42d3dhxa1
not modelled 11.8 16 Fold:Ferredoxin-like
Superfamily:ACT-like
Family:NIL domain-like
43c1bl1A_
not modelled 11.7 38 PDB header:hormone receptor
Chain: A: PDB Molecule:parathyroid hormone receptor;
PDBTitle: pth receptor n-terminus fragment, nmr, 1 structure
44c2c5sA_
not modelled 11.5 10 PDB header:rna-binding protein
Chain: A: PDB Molecule:probable thiamine biosynthesis protein thii;
PDBTitle: crystal structure of bacillus anthracis thii, a trna-2 modifying enzyme containing the predicted rna-binding3 thump domain
45c3echC_
not modelled 11.1 55 PDB header:transcription, transcription regulation
Chain: C: PDB Molecule:25-mer fragment of protein armr;
PDBTitle: the marr-family repressor mexr in complex with its antirepressor armr
46d1rtya_
not modelled 10.7 10 Fold:Ferritin-like
Superfamily:Cobalamin adenosyltransferase-like
Family:Cobalamin adenosyltransferase
47d1r9da_
not modelled 10.6 15 Fold:PFL-like glycyl radical enzymes
Superfamily:PFL-like glycyl radical enzymes
Family:PFL-like
48d2gskb1
not modelled 10.4 4 Fold:TolA/TonB C-terminal domain
Superfamily:TolA/TonB C-terminal domain
Family:TonB
49c2jynA_
not modelled 10.0 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0368 protein ypl225w;
PDBTitle: a novel solution nmr structure of protein yst0336 from2 saccharomyces cerevisiae. northeast structural genomics3 consortium target yt51/ontario centre for structural4 proteomics target yst0336
50d1es6a2
not modelled 10.0 55 Fold:EV matrix protein
Superfamily:EV matrix protein
Family:EV matrix protein
51c1es6A_
not modelled 9.8 55 PDB header:viral protein
Chain: A: PDB Molecule:matrix protein vp40;
PDBTitle: crystal structure of the matrix protein of ebola virus
52c1xx3A_
not modelled 9.7 3 PDB header:transport protein
Chain: A: PDB Molecule:tonb protein;
PDBTitle: solution structure of escherichia coli tonb-ctd
53d1gxma_
not modelled 9.5 25 Fold:alpha/alpha toroid
Superfamily:Family 10 polysaccharide lyase
Family:Family 10 polysaccharide lyase
54d1n62c1
not modelled 9.0 9 Fold:CO dehydrogenase flavoprotein C-domain-like
Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like
Family:CO dehydrogenase flavoprotein C-terminal domain-like
55c3k1dA_
not modelled 8.6 23 PDB header:transferase
Chain: A: PDB Molecule:1,4-alpha-glucan-branching enzyme;
PDBTitle: crystal structure of glycogen branching enzyme synonym: 1,4-alpha-d-2 glucan:1,4-alpha-d-glucan 6-glucosyl-transferase from mycobacterium3 tuberculosis h37rv
56d1d7qa_
not modelled 8.6 5 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
57d1x2ga1
not modelled 8.5 19 Fold:SufE/NifU
Superfamily:SufE/NifU
Family:SP1160 C-terminal domain-like
58d1yeya2
not modelled 8.1 14 Fold:Enolase N-terminal domain-like
Superfamily:Enolase N-terminal domain-like
Family:Enolase N-terminal domain-like
59d1jt8a_
not modelled 7.3 20 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
60c2fq2A_
not modelled 7.3 12 PDB header:lipid transport
Chain: A: PDB Molecule:acyl carrier protein;
PDBTitle: solution structure of minor conformation of holo-acyl2 carrier protein from malaria parasite plasmodium falciparum
61d2oeza1
not modelled 7.3 8 Fold:YacF-like
Superfamily:YacF-like
Family:YacF-like
62d1h4ra3
not modelled 7.2 11 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:First domain of FERM
63c2kw0A_
not modelled 7.0 12 PDB header:oxidoreductase
Chain: A: PDB Molecule:ccmh protein;
PDBTitle: solution structure of n-terminal domain of ccmh from escherichia.coli
64d3ceda1
not modelled 7.0 16 Fold:Ferredoxin-like
Superfamily:ACT-like
Family:NIL domain-like
65c2zhzC_
not modelled 7.0 8 PDB header:transferase
Chain: C: PDB Molecule:atp:cob(i)alamin adenosyltransferase, putative;
PDBTitle: crystal structure of a pduo-type atp:cobalamin adenosyltransferase2 from burkholderia thailandensis
66c2l9fA_
not modelled 7.0 9 PDB header:transferase
Chain: A: PDB Molecule:cale8;
PDBTitle: nmr solution structure of meacp
67d1vi7a2
not modelled 6.9 12 Fold:Ferredoxin-like
Superfamily:EF-G C-terminal domain-like
Family:YigZ C-terminal domain-like
68c1vi7A_
not modelled 6.8 10 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein yigz;
PDBTitle: crystal structure of an hypothetical protein
69c2hl7A_
not modelled 6.5 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c-type biogenesis protein ccmh;
PDBTitle: crystal structure of the periplasmic domain of ccmh from pseudomonas2 aeruginosa
70d1jroa3
not modelled 6.5 17 Fold:CO dehydrogenase flavoprotein C-domain-like
Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like
Family:CO dehydrogenase flavoprotein C-terminal domain-like
71c2p4vA_
not modelled 6.5 15 PDB header:transcription
Chain: A: PDB Molecule:transcription elongation factor greb;
PDBTitle: crystal structure of the transcript cleavage factor, greb2 at 2.6a resolution
72c2fq8A_
not modelled 6.4 36 PDB header:unknown function
Chain: A: PDB Molecule:2f;
PDBTitle: nmr structure of 2f associated with lipid disc
73c2fq5A_
not modelled 6.4 36 PDB header:unknown function
Chain: A: PDB Molecule:peptide 2f;
PDBTitle: nmr structure of 2f associated with lipid disc
74d7mdha2
not modelled 6.3 0 Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
75c1hucC_
not modelled 6.3 18 PDB header:thiol protease
Chain: C: PDB Molecule:cathepsin b;
PDBTitle: the refined 2.15 angstroms x-ray crystal structure of human2 liver cathepsin b: the structural basis for its specificity
76c3sc0A_
not modelled 6.3 25 PDB header:oxidoreductase
Chain: A: PDB Molecule:methylmalonic aciduria and homocystinuria type c protein;
PDBTitle: crystal structure of mmachc (1-238), a human b12 processing enzyme,2 complexed with methylcobalamin
77d1v8ca2
not modelled 6.2 20 Fold:TBP-like
Superfamily:MoaD-related protein, C-terminal domain
Family:MoaD-related protein, C-terminal domain
78d2up1a2
not modelled 6.1 19 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
79c2ochA_
not modelled 6.1 38 PDB header:chaperone
Chain: A: PDB Molecule:hypothetical protein dnj-12;
PDBTitle: j-domain of dnj-12 from caenorhabditis elegans
80c2vgpD_
not modelled 6.1 28 PDB header:transferase
Chain: D: PDB Molecule:inner centromere protein a;
PDBTitle: crystal structure of aurora b kinase in complex with a2 aminothiazole inhibitor
81d1uptd_
not modelled 6.1 31 Fold:GRIP domain
Superfamily:GRIP domain
Family:GRIP domain
82d2jeka1
not modelled 6.0 19 Fold:Rv1873-like
Superfamily:Rv1873-like
Family:Rv1873-like
83d2r4qa1
not modelled 6.0 12 Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:PTS system IIB component-like
Family:PTS system, Fructose specific IIB subunit-like
84c2e5aA_
not modelled 5.9 8 PDB header:ligase
Chain: A: PDB Molecule:lipoyltransferase 1;
PDBTitle: crystal structure of bovine lipoyltransferase in complex2 with lipoyl-amp
85d1t3qc1
not modelled 5.9 8 Fold:CO dehydrogenase flavoprotein C-domain-like
Superfamily:CO dehydrogenase flavoprotein C-terminal domain-like
Family:CO dehydrogenase flavoprotein C-terminal domain-like
86c2l4bA_
not modelled 5.8 8 PDB header:transferase
Chain: A: PDB Molecule:acyl carrier protein;
PDBTitle: solution structure of a putative acyl carrier protein from anaplasma2 phagocytophilum. seattle structural genomics center for infectious3 disease target anpha.01018.a
87c2kciA_
not modelled 5.8 11 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative acyl carrier protein;
PDBTitle: solution nmr structure of gmet_2339 from geobacter2 metallireducens. northeast structural genomics consortium3 target gmr141
88d2q22a1
not modelled 5.8 13 Fold:Ava3019-like
Superfamily:Ava3019-like
Family:Ava3019-like
89c2pt7G_
not modelled 5.7 13 PDB header:hydrolase/protein binding
Chain: G: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of cag virb11 (hp0525) and an inhibitory protein2 (hp1451)
90d1vcta1
not modelled 5.7 10 Fold:Spectrin repeat-like
Superfamily:PhoU-like
Family:PhoU-like
91d2qlvb1
not modelled 5.7 19 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:AMPK-beta glycogen binding domain-like
92d1r6ta2
not modelled 5.6 23 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain
93c2k9kA_
not modelled 5.6 17 PDB header:metal transport
Chain: A: PDB Molecule:tonb2;
PDBTitle: molecular characterization of the tonb2 protein from vibrio2 anguillarum
94d2f15a1
not modelled 5.6 17 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:AMPK-beta glycogen binding domain-like
95c3g59A_
not modelled 5.5 27 PDB header:transferase
Chain: A: PDB Molecule:fmn adenylyltransferase;
PDBTitle: crystal structure of candida glabrata fmn2 adenylyltransferase in complex with atp
96c2or0B_
not modelled 5.5 7 PDB header:oxidoreductase
Chain: B: PDB Molecule:hydroxylase;
PDBTitle: structural genomics, the crystal structure of a putative hydroxylase2 from rhodococcus sp. rha1
97c2dn9A_
not modelled 5.5 21 PDB header:apoptosis, chaperone
Chain: A: PDB Molecule:dnaj homolog subfamily a member 3;
PDBTitle: solution structure of j-domain from the dnaj homolog, human2 tid1 protein
98c3oakC_
not modelled 5.5 57 PDB header:transcription
Chain: C: PDB Molecule:transcription elongation factor spt6;
PDBTitle: crystal structure of a spn1 (iws1)-spt6 complex
99c3fq9A_
not modelled 5.4 5 PDB header:hormone
Chain: A: PDB Molecule:insulin;
PDBTitle: design of an insulin analog with enhanced receptor-binding2 selectivity. rationale, structure, and therapeutic3 implications

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0