307 c3md0A_ Probab=87.00   E-value=1.7  Score=20.73  Aligned_columns=146  Identities=14%

Q ss_pred             HHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHCCCCCCCCHHHHHC
Q ss_conf             99999999852035788871899973888877005899999999977993899966588989457638999889888762
Q batch____       508 EAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSEILI  587 (720)
Q Consensus       508 e~~r~l~~~l~~~~~~~~~~~i~vtS~~~~eGks~~a~~lA~~~a~~g~rvLlID~d~r~~~l~~~~~~~~~~gl~~~l~  587 (720)
                      +.-+.....+....+..+...+...-+.||-||||+...|.......|.++=.+-.+.                      
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~Iai~G~pnaGKSSLln~L~~~~~~~~~~~~~t~~~~----------------------   87 (301)
T c3md0A_          30 DHREQAQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVRM----------------------   87 (301)
T ss_dssp             HHHHHHHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCC----------------------
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEECC----------------------
T ss_conf             5899999999875332289728999738988788999999987641457675167710----------------------


Q ss_pred             CCCCHHHHCCCCCCCCEEEEECCCCCCCHHHHHCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHCCEEEEEEC
Q ss_conf             78998893001678986899569889998887161899999999985199999958874354689999997695999812
Q batch____       588 GQGDITTAAKPTSIAKFDLIPRGQVPPNPSELLMSERFAELVNWASKNYDLVLIDTPPILAVTDAAIVGRHVGTTLMVAR  667 (720)
Q Consensus       588 ~~~~~~~~i~~~~~~~l~vl~~g~~~~~~~~ll~~~~~~~~l~~lr~~yD~ViiD~pp~~~~~d~~~l~~~~d~~llvv~  667 (720)
                              ......++..|.    ....|.---.......+++  ...+|.+++++     ...+..+...+|.+++|+.
T Consensus        88 --------~~~~~~~~~~v~----~~dt~G~~~~~~~~~~~~d--~~~~d~~~~e~-----~~~~~~~~~~~d~~~~v~d  148 (301)
T c3md0A_          88 --------ARLAVHPNAYIR----PSTLGGVTRATRETVVLLE--AAGFDVILIET-----GQSEVAVANMVDTFVLLTL  148 (301)
T ss_dssp             --------HHHHTSTTEEEE----CCCHHHHHHHHHHHHHHHH--HTTCCEEEEEC-----CCHHHHHHTTCSEEEEEEE
T ss_pred             --------EEEEEECCEEEE----EEECCCCCCHHHHHHHHHH--HCCCCHHHHHH-----HHHHHHHHHCCCEEEEEEC
T ss_conf             --------013603987899----9602341100367899964--23865214543-----6899998613885579625


Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf             87225999999999999779977799970647
Q batch____       668 YAVNTLKEVETSLSRFEQNGIPVKGVILNSIF  699 (720)
Q Consensus       668 ~~~t~~~~~~~a~~~l~~~~~~~~G~vln~v~  699 (720)
                      ...............     ....=+|+|++|
T Consensus       149 ~~~~~~~~~~~~~~~-----~~~~i~viNK~D  175 (301)
T c3md0A_         149 ARTGDQLQGIKKGVL-----ELADIVVVNKAD  175 (301)
T ss_dssp             SCTTTTTTTCCTTGG-----GGCSEEEEECCC
T ss_pred             CCCCHHHHHHHHHHC-----CCCEEEEEECCC
T ss_conf             578526787544323-----677089851546