80 c1nijA_ Probab=97.13   E-value=0.012  Score=35.91  Aligned_columns=141  Identities=9%

Q ss_pred             EEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHCCCCCCCCHHHHHCCCCCHHHHCCCCCCCCEEEEE
Q ss_conf             99973888877005899999999977993899966588989457638999889888762789988930016789868995
Q batch____       529 LMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAKPTSIAKFDLIP  608 (720)
Q Consensus       529 i~vtS~~~~eGks~~a~~lA~~~a~~g~rvLlID~d~r~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~l~vl~  608 (720)
                      |.|.++-.|.||||+..+|...  ..|.|+.+|--|+                      |+..++..........+.-|+
T Consensus         5 v~iitGfLGaGKTTll~~ll~~--~~~~~~avi~Nef----------------------g~~~iD~~ll~~~~~~v~~l~   60 (317)
T c1nijA_           5 VTLLTGFLGAGKTTLLRHILNE--QHGYKIAVIENEF----------------------GEVSVDDQLIGDRATQIKTLT   60 (317)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS--CCCCCEEEECSSC----------------------CSCCEEEEEECTTSCEEEEET
T ss_pred             EEEECCCCCCCHHHHHHHHHHC--CCCCEEEEEEECC----------------------CCCCHHHHHHHHCCCEEEEEC
T ss_conf             8998089888988999999842--6997389997166----------------------444205889840797299977


Q ss_pred             CC----CCCCCHHHHHCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH---------CCEEEEEECCCC--CCH
Q ss_conf             69----889998887161899999999985199999958874354689999997---------695999812872--259
Q batch____       609 RG----QVPPNPSELLMSERFAELVNWASKNYDLVLIDTPPILAVTDAAIVGRH---------VGTTLMVARYAV--NTL  673 (720)
Q Consensus       609 ~g----~~~~~~~~ll~~~~~~~~l~~lr~~yD~ViiD~pp~~~~~d~~~l~~~---------~d~~llvv~~~~--t~~  673 (720)
                      .|    .....-...+  ..+.+-...-+..||+|||+++.+............         .|+++.||.+..  ...
T Consensus        61 ~GCiCC~~~~~~~~~l--~~l~~~~~~~~~~~d~i~IE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vi~vvD~~~~~~~~  138 (317)
T c1nijA_          61 NGCICCSRSNELEDAL--LDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM  138 (317)
T ss_dssp             TSCEEECTTSCHHHHH--HHHHHHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH
T ss_pred             CCCEECCCHHHHHHHH--HHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEEEEEEECHHHHHHH
T ss_conf             9954213247789999--99998412554686689980887579899998863082011308980178997402677766


Q ss_pred             HHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf             99999999999779977799970647
Q batch____       674 KEVETSLSRFEQNGIPVKGVILNSIF  699 (720)
Q Consensus       674 ~~~~~a~~~l~~~~~~~~G~vln~v~  699 (720)
                      .......+.+..+..    +|+|++|
T Consensus       139 ~~~~~~~~Qi~~Ad~----ivlnk~D  160 (317)
T c1nijA_         139 NQFTIAQSQVGYADR----ILLTKTD  160 (317)
T ss_dssp             HHCHHHHHHHHTCSE----EEEECTT
T ss_pred             HHHHHHHHHHHHCCE----EEEECCC
T ss_conf             322556445310778----9960556