BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (906 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P39393 Putative uncharacterized protein yjiV n=34 Tax=E... 1895 0.0 UniRef50_D0KMA4 DEAD/DEAH box helicase domain protein n=9 Tax=Ba... 893 0.0 UniRef50_B7VNH2 Putative uncharacterized protein n=1 Tax=Vibrio ... 597 e-169 UniRef50_B5WD63 DEAD/DEAH box helicase domain protein n=1 Tax=Bu... 496 e-138 UniRef50_A1K7X0 Putative helicase related protein n=3 Tax=Proteo... 381 e-104 UniRef50_A1U8P2 Helicase domain protein n=1 Tax=Marinobacter aqu... 330 2e-88 UniRef50_Q5WTN0 Putative uncharacterized protein n=1 Tax=Legione... 329 3e-88 UniRef50_A0KWV0 DEAD/DEAH box helicase domain protein n=2 Tax=Ga... 270 2e-70 UniRef50_A3EKW9 Dead/deah box helicase domain protein n=3 Tax=Vi... 261 9e-68 UniRef50_C3MEZ4 ATP-dependent helicase n=1 Tax=Rhizobium sp. NGR... 255 4e-66 UniRef50_B1ITS0 Helicase superfamily 1 and 2 ATP-binding n=14 Ta... 253 2e-65 UniRef50_A6BZ17 Putative uncharacterized protein n=1 Tax=Plancto... 233 2e-59 UniRef50_Q0FU13 Putative uncharacterized protein n=1 Tax=Roseova... 233 4e-59 UniRef50_B3Q0I0 Hypothetical conserved protein n=2 Tax=Rhizobium... 224 9e-57 UniRef50_A5P8I3 Putative uncharacterized protein n=1 Tax=Erythro... 199 4e-49 UniRef50_A1U8P4 DEAD/DEAH box helicase domain protein n=2 Tax=Al... 176 5e-42 UniRef50_B0MUI1 Putative uncharacterized protein n=3 Tax=cellula... 151 1e-34 UniRef50_Q881M9 Helicase domain protein n=1 Tax=Pseudomonas syri... 105 9e-21 UniRef50_D1P9G0 Putative DEAD/DEAH box helicase n=1 Tax=Prevotel... 75 9e-12 UniRef50_UPI0001BC7B8F putative helicase related protein n=1 Tax... 72 9e-11 UniRef50_A3EKW8 Copper-binding protein n=1 Tax=Vibrio cholerae V... 71 2e-10 UniRef50_Q0AZK9 Helicase n=1 Tax=Syntrophomonas wolfei subsp. wo... 53 5e-05 UniRef50_Q3M825 DEAD/DEAH box helicase-like n=1 Tax=Anabaena var... 50 3e-04 UniRef50_B0K504 DEAD/DEAH box helicase domain protein n=9 Tax=Ba... 50 4e-04 UniRef50_B4VWS3 Type III restriction enzyme, res subunit family ... 50 4e-04 UniRef50_C6PTC5 Helicase domain protein n=1 Tax=Clostridium carb... 50 4e-04 UniRef50_UPI0001C373E9 helicase n=1 Tax=Ruminococcus flavefacien... 48 0.002 UniRef50_B1I5A5 DEAD/DEAH box helicase domain protein n=1 Tax=Ca... 47 0.003 UniRef50_D1BVL7 DEAD/DEAH box helicase domain protein n=1 Tax=Xy... 45 0.012 UniRef50_Q2SCB8 Distinct helicase family with a unique C-termina... 45 0.015 UniRef50_C1XMC1 Helicase family protein with metal-binding cyste... 45 0.016 UniRef50_Q2SFN9 Distinct helicase family with a unique C-termina... 44 0.031 UniRef50_D1CII2 DEAD/DEAH box helicase domain protein n=1 Tax=Th... 44 0.042 UniRef50_A1UB29 DEAD/DEAH box helicase domain protein n=2 Tax=My... 43 0.044 UniRef50_B2JBC8 DEAD/DEAH box helicase domain protein n=4 Tax=Cy... 43 0.061 UniRef50_B1L4S0 DEAD/DEAH box helicase domain protein n=1 Tax=Ca... 42 0.097 >UniRef50_P39393 Putative uncharacterized protein yjiV n=34 Tax=Enterobacteriaceae RepID=YJIV_ECOLI Length = 906 Score = 1895 bits (4910), Expect = 0.0, Method: Compositional matrix adjust. Identities = 906/906 (100%), Positives = 906/906 (100%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHD 60 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHD Sbjct: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHD 60 Query: 61 ATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCS 120 ATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCS Sbjct: 61 ATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCS 120 Query: 121 ASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRR 180 ASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRR Sbjct: 121 ASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRR 180 Query: 181 LITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARA 240 LITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARA Sbjct: 181 LITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARA 240 Query: 241 KQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKER 300 KQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKER Sbjct: 241 KQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKER 300 Query: 301 ADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGL 360 ADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGL Sbjct: 301 ADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGL 360 Query: 361 EKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVRNP 420 EKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVRNP Sbjct: 361 EKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVRNP 420 Query: 421 ESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGP 480 ESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGP Sbjct: 421 ESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGP 480 Query: 481 LAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQ 540 LAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQ Sbjct: 481 LAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQ 540 Query: 541 YDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEG 600 YDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEG Sbjct: 541 YDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEG 600 Query: 601 GFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATI 660 GFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATI Sbjct: 601 GFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATI 660 Query: 661 PGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFW 720 PGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFW Sbjct: 661 PGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFW 720 Query: 721 DVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKTKLTDGAEVTLDTL 780 DVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKTKLTDGAEVTLDTL Sbjct: 721 DVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKTKLTDGAEVTLDTL 780 Query: 781 FKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVELTVFDSPRDIPHHRKLTVTFED 840 FKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVELTVFDSPRDIPHHRKLTVTFED Sbjct: 781 FKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVELTVFDSPRDIPHHRKLTVTFED 840 Query: 841 GQVLKIRFDQGMGYWRINFSSQWHYFDFRDDVSFQLVKMAQACKEGNVANSEESWATDVL 900 GQVLKIRFDQGMGYWRINFSSQWHYFDFRDDVSFQLVKMAQACKEGNVANSEESWATDVL Sbjct: 841 GQVLKIRFDQGMGYWRINFSSQWHYFDFRDDVSFQLVKMAQACKEGNVANSEESWATDVL 900 Query: 901 VEVIAS 906 VEVIAS Sbjct: 901 VEVIAS 906 >UniRef50_D0KMA4 DEAD/DEAH box helicase domain protein n=9 Tax=Bacteria RepID=D0KMA4_PECWW Length = 2104 Score = 893 bits (2307), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/645 (64%), Positives = 513/645 (79%), Gaps = 2/645 (0%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHD 60 +YVNQRQNC CGSPV+E+AFCN+CNEPHLLAR+K+GKLVQWENKGGDEFSLQD++P + + Sbjct: 473 VYVNQRQNCPCGSPVFELAFCNECNEPHLLAREKRGKLVQWENKGGDEFSLQDDIPDDVE 532 Query: 61 ATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCS 120 EKVEKE + P IIAA AGYTLQRLDRQT IGVI+N+SI L INDI+Q+CS Sbjct: 533 PVAEKVEKEIVIKTPHIIAAEHNEAAGYTLQRLDRQTHSIGVIHNNSISLAINDIDQICS 592 Query: 121 ASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRR 180 A C YRG+ G PFRRA+LG PFYVT+IVPTVLEYC DF GK G GP +LPGRGRR Sbjct: 593 ARSCSYRGVKGMSPFRRAILGSPFYVTHIVPTVLEYCPDFLGKNGK-GDGPQTLPGRGRR 651 Query: 181 LITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTS-TAPNANADLEKLAAR 239 LITFTDSRQGTARMAVRMQQEAER+RLRGSVVEILSW+Q+ Q++ A+ D +K Sbjct: 652 LITFTDSRQGTARMAVRMQQEAERNRLRGSVVEILSWYQKQQSAGDVAAADIDPQKFREL 711 Query: 240 AKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKE 299 A +AR++A+EYR GMP +A ++ +A++ EQ + A G K + LVS W EMV EL++ Sbjct: 712 ADKARKEAKEYRDMGMPGEAVEAEEKAQRFEQRLKQALGEKVSVPLVSLGWREMVGELQK 771 Query: 300 RADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQG 359 DI+GP+L+YN Y KPE+F E+ GP+KLSEMLLFREFMRRPKR+NSLETQGLV++GYQG Sbjct: 772 TFDIKGPILRYNRYHKPEIFREHDGPVKLSEMLLFREFMRRPKRSNSLETQGLVKIGYQG 831 Query: 360 LEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVRN 419 LEK P HWQEKGL+L DW+DFLK++LD YVRE+++ QL+D+ + WIGSRF+ + +R+ Sbjct: 832 LEKAQIVPDHWQEKGLSLQDWQDFLKISLDFYVRENSYIQLEDDWRQWIGSRFAPRSLRS 891 Query: 420 PESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTG 479 PES + ++ Q +RWPQIR+G +S RL KLL+LGAG A ID++N WLK AW L+G Sbjct: 892 PESDEHDEYQVKRWPQIRHGIMSQRLIKLLLLGAGLNVKRTADIDVVNNWLKAAWKALSG 951 Query: 480 PLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLA 539 L VL+ DGNRFYLP+EHMTFSL+T A+ICP TNK LDTAFKGLTPYLPTHI FE+L+ A Sbjct: 952 NLGVLRSDGNRFYLPREHMTFSLVTKAYICPATNKFLDTAFKGLTPYLPTHIDFENLSDA 1011 Query: 540 QYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVE 599 Q ++ A+ +PE+W DRSQ DYA G++K R +S DP++ QLR +N+WTDINDR +E Sbjct: 1012 QRLSYSAEPAMLPEVWHFDRSQNDYANGISKVRLQISEDPIVQQLRLQNLWTDINDRAIE 1071 Query: 600 GGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVD 644 GGFYYRTAEHSAQQS+ERL+ YE MFK G +NVLNCSTTMEMGVD Sbjct: 1072 GGFYYRTAEHSAQQSAERLEEYETMFKEGSINVLNCSTTMEMGVD 1116 Score = 263 bits (672), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 129/256 (50%), Positives = 174/256 (67%), Gaps = 2/256 (0%) Query: 648 VMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQ 707 V+TLA+R A IP +WH LVVRS + V+L L + A ERVKDI + + Sbjct: 1848 VITLATRDTLAAIPDSDWHQTQALVVRSQTFALVDLEAVDLACWSEPAGERVKDIPLSTE 1907 Query: 708 LNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKT 767 LNGP++QFG+RFW L +EE +L+ N +IT V+YTDRY+QNP AL LLGSI+ LK Sbjct: 1908 LNGPIAQFGRRFWAELEKANEETGALLKNNQITRVYYTDRYIQNPAALVLLGSIMNQLKP 1967 Query: 768 KLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVELTVFDSPRD 827 +L+ +V ++TLFK K++PG + HDW + DFQ FA+ WF + +PV++T+ S RD Sbjct: 1968 RLSVHTQVAINTLFKTKEKPGFKAAHDWANKDDFQGFAEHWFTTLMDKPVDVTLNYSKRD 2027 Query: 828 IPHHRKLTVTFEDGQVLKIRFDQGMGYWRINFSSQWHYFDFRDDVSFQLVKMAQACKEGN 887 IPHHRKL V F++G+ LKIRFDQGMGYW I FS ++FRDDV QL MA++ ++ Sbjct: 2028 IPHHRKLLVEFDNGKALKIRFDQGMGYWSIQFSPD--SYNFRDDVEDQLYNMARSLEQAW 2085 Query: 888 VANSEESWATDVLVEV 903 V+N E+ W TDVLVE+ Sbjct: 2086 VSNKEDRWPTDVLVEI 2101 >UniRef50_B7VNH2 Putative uncharacterized protein n=1 Tax=Vibrio splendidus LGP32 RepID=B7VNH2_VIBSL Length = 2085 Score = 597 bits (1538), Expect = e-169, Method: Compositional matrix adjust. Identities = 311/648 (47%), Positives = 415/648 (64%), Gaps = 35/648 (5%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHD 60 +Y QRQ CDCG+PV E++FC DCNEPHL+ DKKGKL+QW GDEFSLQ E + D Sbjct: 477 VYAVQRQTCDCGAPVLELSFCLDCNEPHLMGLDKKGKLLQWNGGAGDEFSLQQERLDDDD 536 Query: 61 ATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCS 120 ++++ + P + A + Y + + IG + ++ +Q C Sbjct: 537 QDVQQLDDTARY--PEMFGAKQDDHEHYAAINIGKDGI-IGSVKPGYELMMDTAKKQTCC 593 Query: 121 ASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRR 180 + C + G + PFRRA+LG PFY+ N+VPT+LE+C D +D G EG P SLP RGRR Sbjct: 594 S--CNFEGYNHGSPFRRAMLGAPFYIANVVPTLLEFCPDIVAD-GPEG--PQSLPARGRR 648 Query: 181 LITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQ--TSTAPNANADLEKLAA 238 LITFTDSRQGTAR++VRMQQEAERS+LRG+VVE+L Q +Q P+ + L A Sbjct: 649 LITFTDSRQGTARLSVRMQQEAERSKLRGAVVEVLRDKQLSQPQNDDKPSEGVSAQDLLA 708 Query: 239 RAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELK 298 +AK E R+ GM A++ +AQA +E G A L +W +MV EL Sbjct: 709 KAK-------ELRAMGMNGPAEMLEAQASAIES-------GGAELTLAKLSWNDMVTELA 754 Query: 299 ERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQ 358 +++D+ G +LQYN YL PE+F + G KL++MLLFREF RRPKR NS ETQG+V+V Y Sbjct: 755 KKSDLNGAMLQYNQYLSPEIFKQFDGSAKLADMLLFREFARRPKRQNSSETQGMVKVSYA 814 Query: 359 GLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDE--LKNWIGSRFSSKF 416 GL+KI P W+E G LDDW DF+KV+LD Y+RE+NF +L+D LK W+GSRF+SK Sbjct: 815 GLDKIKSCPDRWEEYGYKLDDWLDFIKVSLDFYIRENNFLRLEDAGWLK-WVGSRFASKS 873 Query: 417 VRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQ 476 +RNP+S++ + + ++WPQIR+GN +RL KLL + + DIIN WL AW + Sbjct: 874 LRNPDSEEANEGRVKKWPQIRSGN-HNRLVKLLAATSSIDADSTVGNDIINGWLASAWHE 932 Query: 477 LTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHL 536 LT +L PD NRF L + +TFS + IC VTNK++DT F+G++PYLP + Sbjct: 933 LTVNTRILSPDNNRFALDRNKITFSFVDKVHICKVTNKLIDTTFRGISPYLPRKVE---- 988 Query: 537 TLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDR 596 ++QY +V P IW+++ +Q DY +GL R+ V D + LR N+WTDINDR Sbjct: 989 DISQYKCV---EVDFPCIWQVEATQHDYQKGLKHIREIVGKDSKVEYLREHNLWTDINDR 1045 Query: 597 VVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVD 644 VEGG YYRTAEHSAQQSS+RL YE +FK G++NVLNCSTTMEMGVD Sbjct: 1046 AVEGGLYYRTAEHSAQQSSDRLNEYEDLFKKGKINVLNCSTTMEMGVD 1093 Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 77/264 (29%), Positives = 133/264 (50%), Gaps = 6/264 (2%) Query: 644 DTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQ 703 D ++V T+A+ Q TIPG W + + + + F+L ++ I+ Sbjct: 1822 DGNKVSTIANTVAQNTIPGKLWLQQGGISICCESTQLHPQSPFVLSISKKGEAPQIASIE 1881 Query: 704 IHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILR 763 + +LNG LS+FG+ FW +F + L+ + I+ V Y+DRY+Q+P ++ ++ +L Sbjct: 1882 LVDELNGSLSKFGKAFWITMFKTNPNLAELLKSESISEVEYSDRYIQSPSSMLMICELLG 1941 Query: 764 PLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVELTVFD 823 + VT++TL+ +K G+ HDW +F + + W LG + + Sbjct: 1942 YICRGFDSIRTVTINTLYHEKQTVGHYLHHDWQDKGEFIEAYEVWGELKLGVKPSVKCHE 2001 Query: 824 SPRDIPHHRKLTVTFEDGQVLKIRFDQGMGYWRINFSSQWH---YFDFRDDVSFQLVKMA 880 I H R LT+ E G+ L +FDQG+GYWRI+ ++ + F D+ QL + Sbjct: 2002 KRSSIAHRRLLTLKLESGRELVFKFDQGVGYWRISDTTSRFDKVKYSFHSDLDPQLRDLR 2061 Query: 881 QACKEGN-VANSEESWATDVLVEV 903 KE N V ++ ESW+TDV +++ Sbjct: 2062 S--KEPNLVVSNSESWSTDVTLQI 2083 >UniRef50_B5WD63 DEAD/DEAH box helicase domain protein n=1 Tax=Burkholderia sp. H160 RepID=B5WD63_9BURK Length = 2083 Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust. Identities = 284/666 (42%), Positives = 374/666 (56%), Gaps = 55/666 (8%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHD 60 +YV QR C+C +PVYE+AFC++C PHLLA D+ G+L Q DEFSL + P E + Sbjct: 469 VYVTQRSRCECHAPVYELAFCDECKTPHLLAEDRAGQLQQRSPYASDEFSLSYDSPAEDE 528 Query: 61 ATEE--KVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQV 118 + F +IAA ET Y +++ T +G + + ++ E + Sbjct: 529 PNGDLPSSLSRRQFAEKFVIAASETQREPYFPLQVNLSTLNVGALPSTDTRELVVAPESL 588 Query: 119 CSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRG 178 + S C P R+A LG PFYV N VPTVLE+C D E +G P+ LPGRG Sbjct: 589 ATCSRCETSFTGSPGPLRKAYLGAPFYVANAVPTVLEFCPD-PMPEDSDGKSPEELPGRG 647 Query: 179 RRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAA 238 R+LITFTDSRQGTARMAVRMQQEAERSRLRG V EIL NA A KL A Sbjct: 648 RKLITFTDSRQGTARMAVRMQQEAERSRLRGLVFEILR-----------NAQA---KLDA 693 Query: 239 RAK--------QAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTW 290 + K + EQA+ +S GM D + QL Q + A G + + +W Sbjct: 694 KPKDIPTVGYEELIEQAKRLQSMGMNDMSA-------QLFQKAEEARSGLSTSGTSEMSW 746 Query: 291 TEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQ 350 ++MV EL DI + YN Y PE+F G + ++ +LL RE+ RRPK NS ET Sbjct: 747 SDMVTELATSRDISLSIRDYNKYANPELFEGQEGAIPMARLLLAREYARRPKNQNSTETL 806 Query: 351 GLVQVGYQGLEKIHKSPLHWQEK------------GLTLDDWRDFLKVTLDHYVRESNFT 398 GLV+VGY+GL+ I +P W + LTL DWRDFLKV LD +VRE+ F Sbjct: 807 GLVRVGYRGLDGITSAPALWLGRKAGALPGEAVPGNLTLQDWRDFLKVALDFHVRENTFI 866 Query: 399 QLDDELKNWIGSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTV 458 +LD ++ W+G+RF+SK + + E ++WPQ R G HRL KLL G Sbjct: 867 RLDPTMQRWMGARFTSKVLMPSKRDAAESATFKKWPQFRQGR-GHRLVKLLEQGCNLDRS 925 Query: 459 NAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDT 518 DIIN L+ AW L G + + +G + L +TFSL T AW+CP+T+++ DT Sbjct: 926 RPDDQDIINHLLEHAWNALVGATILEQFEGG-YALNLNTLTFSLPTIAWVCPLTHRMFDT 984 Query: 519 AFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHD 578 AF+ LTPY+P + + +KV +P + L D + R V+ + Sbjct: 985 AFRALTPYMPDRF--------REGDYRCRKVQLP-TFSLLSPAGDADAARVQVRRLVTDN 1035 Query: 579 PLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTT 638 P + QLRS+N+WTDI DR EGGFYYRTAEHSAQQSS RL++YE MFK G++NVLNCSTT Sbjct: 1036 PQVQQLRSQNLWTDICDRTAEGGFYYRTAEHSAQQSSSRLETYEDMFKRGKINVLNCSTT 1095 Query: 639 MEMGVD 644 MEMGVD Sbjct: 1096 MEMGVD 1101 Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 58/198 (29%), Positives = 94/198 (47%), Gaps = 6/198 (3%) Query: 702 IQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSI 761 +++ +LNGP+S R ++ SLM + T V Y+DRYL++P +L LLG Sbjct: 1883 LEVVTELNGPVSSLAARLRGLISERVPALASLMAHDHATEVSYSDRYLKSPWSLMLLGGF 1942 Query: 762 LRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVELTV 821 L K+ E+ TL + N HDW D + W + ++T+ Sbjct: 1943 LSIFKSSELRRLEIA--TLRPQATQVSNHLKHDWNRPEDMRKLICAWLQTMVSVEPQVTM 2000 Query: 822 FDSPRDIPHHRKLTVTFEDGQVLKIRFDQGMGYW--RINFSSQWHYFDFRDDVSFQLVKM 879 + P D+ H R + V++ G+ K+ DQG+GYW + + Q H FDF + + Q +M Sbjct: 2001 VEKPYDLQHSRVIYVSWASGRKTKLILDQGVGYWQPKTVYRDQAH-FDFNESLEAQGSRM 2059 Query: 880 AQACKEGNVANSEESWAT 897 + K N+ N +W T Sbjct: 2060 VEQYKFANMVNG-GTWPT 2076 >UniRef50_A1K7X0 Putative helicase related protein n=3 Tax=Proteobacteria RepID=A1K7X0_AZOSB Length = 2109 Score = 381 bits (979), Expect = e-104, Method: Compositional matrix adjust. Identities = 258/677 (38%), Positives = 364/677 (53%), Gaps = 67/677 (9%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLAR------DKKGKLVQWENKGGDEFSLQDE 54 +Y R++C+CGSPVYE+ CN+CN +L AR D K +L+Q + DEFSL E Sbjct: 473 VYTEPRKHCECGSPVYELRSCNECNTTYLWARRYGPGEDGKYRLLQTTEEDFDEFSLDTE 532 Query: 55 VPVEHDATEEKVEKENSFQPPLIIAA--GETSEA---GYTLQ----RLDRQTRRIGVINN 105 E D E++ + + P LI A G T E TL LD R G + Sbjct: 533 R-AEED--EQQAQVRPGYSPVLIANAHKGATEEILVDAATLALDPLELDGAVRLRG--RD 587 Query: 106 DSIPLIINDIEQVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEG 165 +S+ + VC G + +G FR+A+LG PF + IVPT+LE+C D + E Sbjct: 588 ESVIDDQGTLAMVCPECG-AHDPSNGLGLFRKAILGAPFLLGEIVPTLLEFCPDIDNSEA 646 Query: 166 KEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTST 225 K P P RGRR+I+FTDSRQGTAR+A R+QQ++ER+R+RG V + TS Sbjct: 647 K----PLERPYRGRRMISFTDSRQGTARIAARLQQDSERNRIRGLVF------TKVLTSG 696 Query: 226 APNANADLEKLAARAKQAREQAEEYRSWGMPD---QAKLSQAQAEQLEQAYQAATGGKAA 282 +P AD+ +L Q + +A G P+ Q +A+ LE +G + Sbjct: 697 SPGGEADVAQL-----QGQVEALGAVLAGGPNPQIQVIYDSLRAKLLE-----FSGFRPV 746 Query: 283 TILVSRTWTEMVNELKER-ADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRP 341 + EMV L +D+R + Y P F N G +L+ +LL REF RRP Sbjct: 747 P------FAEMVQWLSSAVSDVRDWMYGYYRDQDPGEFGTNNGRERLARILLTREFGRRP 800 Query: 342 KRTNSLETQGLVQVGYQGLEKIHKSPLHWQE-KGLTLDDWRDFLKVTLDHYVRESNFTQL 400 KR NSLET GLV+ Y LE I++ P E ++L DW+DFLK+ LD ++RE+ F L Sbjct: 801 KRVNSLETMGLVRTVYPKLEAINRLPDFVGEVPAISLSDWKDFLKIALDFHIRENTFIDL 860 Query: 401 DDELKNWIGSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNA 460 D + W G+R S+K + PE++ + N+ +RWPQ RL ++L G +A Sbjct: 861 PDAWRKWGGNRLSAKQLMPPETQQAQTNRYKRWPQCAVIERQSRLVRILARGLNIDPQSA 920 Query: 461 ATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLP---KEHMTFSLITDAWICPVTNKILD 517 + + I+ L+ AW QL L +L+ YL E M + I +AW+CPVT ++LD Sbjct: 921 SGRNAIDAILRGAWKQLLD-LKLLEMGDVGRYLKLDGAEIMALAPIENAWLCPVTRRVLD 979 Query: 518 TAFKGLTPYLPTHISFEHLTLAQYDTFVAQKV--TMPEIWKLDRSQEDYAEGLAKARDWV 575 TAF G+TPYLP A+ D+ VA+ V MP+ + E E + RDW+ Sbjct: 980 TAFMGITPYLPEQ--------AKSDS-VAKCVPLKMPDYSPIANLDEIGDERVELVRDWL 1030 Query: 576 SHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNC 635 + D + LR + +W+D+NDRVVEG FY+R AEHSAQQ RL YE FK G++N+L+C Sbjct: 1031 NTDDAVTALRKDGLWSDLNDRVVEGAFYFRAAEHSAQQPGARLAEYEAAFKTGRINLLSC 1090 Query: 636 STTMEMGVDTDRVMTLA 652 STTMEMGVD + +A Sbjct: 1091 STTMEMGVDIGGISVVA 1107 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 69/254 (27%), Positives = 109/254 (42%), Gaps = 26/254 (10%) Query: 647 RVMTLASRSQQATIPGPEW-HLNDELVVRSLGYKTVELNE---FILPAKATNAVERVKDI 702 RV+ A +A +PG W + ++VR K V L E F L A + V+ I Sbjct: 1846 RVLAWAGLQGRA-VPGANWGDCDGTILVRGAVIKPVALGERLEFALSAPEGLPAQTVR-I 1903 Query: 703 QIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSIL 762 +I +L+G FG+R + F H ++ RI + Y DRYL P+ +ALL + Sbjct: 1904 EISNELDGMADGFGRRMLES-FQGHLGISLVLPGERIVELTYHDRYLNAPLPVALLLEFV 1962 Query: 763 RPLKTKLT---DGAEVTLDTLFKDKDRPGNRP----FHDWMSIADFQDFADQWFAAAL-- 813 L+ D +V L +P P + +W S + D+ AA Sbjct: 1963 CALRASADESWDVKQVALSVAPVPDAQPSRMPPSKVWQNWSS----DEERDKALVAAFEY 2018 Query: 814 -GRPVELTVFDSPRDIPHHRKLTVTFEDGQVLKIRFDQGMGYWRI----NFSSQWHYFDF 868 G + L + RD H R+L + F G+ L++ FDQG YW++ + +F F Sbjct: 2019 AGLDLSLATL-TKRDSIHARRLDIVFASGKKLQVWFDQGFSYWQVPRDRTIGTGRVWFPF 2077 Query: 869 RDDVSFQLVKMAQA 882 D+ Q + +A Sbjct: 2078 AGDLERQAESIGRA 2091 >UniRef50_A1U8P2 Helicase domain protein n=1 Tax=Marinobacter aquaeolei VT8 RepID=A1U8P2_MARAV Length = 1422 Score = 330 bits (846), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 190/449 (42%), Positives = 265/449 (59%), Gaps = 40/449 (8%) Query: 209 GSVVEILSWHQRTQTSTAPNA-NADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAE 267 G V +IL Q + NA A E+L +QAE+ GM A +++AE Sbjct: 22 GLVFQILRNKQAKADAGPKNAPTASYEELI-------QQAEQLEKMGMHAAASGVRSEAE 74 Query: 268 QLEQAYQAATGGKAATILVSRTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLK 327 +L +GG + L W E+V +L D++ +L YN Y P++FN N G Sbjct: 75 KLN------SGGSSEDRL-EVPWPELVEDLAATNDLKYSILDYNRYANPQLFNGNEGSYS 127 Query: 328 LSEMLLFREFMRRPKRTNSLETQGLVQVGYQGLEKIHKSPLHW-----------QEKGLT 376 ++ +LL REF RRPK NS ET GLV VGY+GLE+I +P W E LT Sbjct: 128 MARVLLLREFARRPKNQNSTETLGLVSVGYKGLEQITHTPDFWTETQARSADGKSESRLT 187 Query: 377 LDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVRNPESKDPEDNQNRRWPQI 436 LDDW+DFLKV LD +VRE+ F + + ++W+G+RF+ K + P S D +++ WPQ Sbjct: 188 LDDWKDFLKVALDFHVRENTFLRFGETERSWMGARFAPKELYAPGS-DVSGTRDKAWPQF 246 Query: 437 RNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKE 496 + G+ S RL K+L LG G T + + +N WLK AW L +L+ G + L +E Sbjct: 247 QKGSQS-RLVKVLSLGTGLNTELESHRNKLNGWLKAAWQALVKS-QILQTQGGGYALSRE 304 Query: 497 HMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWK 556 +TFSL AW+CPVTN+++DT F+GLTPYLP A+ + + ++ MPE Sbjct: 305 TLTFSLPKSAWVCPVTNRLIDTTFRGLTPYLPNK--------AEVEKYRCTRIDMPEFTS 356 Query: 557 LDRSQEDYAEGLAKA-RDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSS 615 L + E EG+ ++ R+ V+ + ++A LR +N+WTDI+DR EGGFYYRTAEHSAQQ++ Sbjct: 357 L--APEGETEGVLRSIRNRVAANDVVASLREQNLWTDISDRTAEGGFYYRTAEHSAQQAA 414 Query: 616 ERLQSYEKMFKNGQLNVLNCSTTMEMGVD 644 ERLQ YE FK G++NVLNCSTTMEMGVD Sbjct: 415 ERLQRYEDDFKKGKINVLNCSTTMEMGVD 443 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 62/253 (24%), Positives = 123/253 (48%), Gaps = 5/253 (1%) Query: 639 MEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNA-VE 697 ++ ++ D ++TL + S A PG W D+ + ++ + L +A Sbjct: 1168 LQFELEKDGLVTLITNSTNAQSPGENWLSGDDQALWVYSHQEPVFSASSLDMAGWSAQPS 1227 Query: 698 RVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALAL 757 +++ +LNG + + FW +L ++ +I + Y DRYL++P A+ + Sbjct: 1228 GAAVVELTTELNGSIQDLARNFWSILKQKAPSYAEAIDQEKIVSLQYEDRYLKSPWAVVM 1287 Query: 758 LGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALG-RP 816 L +IL+ + ++ D +++ T+ D R + DW++ + + + AALG + Sbjct: 1288 LANILKAV--EIGDETSLSVITMPGDGRRDSRMAWDDWVNAETQRVVSGAFLRAALGVKQ 1345 Query: 817 VELTVFDSPRDIPHHRKLTVTFEDGQVLKIRFDQGMGYWRIN-FSSQWHYFDFRDDVSFQ 875 V+ V + R++ H R L++ G+ +K+ FDQGMGYW + F YF+F + Q Sbjct: 1346 VDFQVNNDRRELTHRRILSIGLASGRTIKLAFDQGMGYWEMKAFRHDLKYFNFDLGLEAQ 1405 Query: 876 LVKMAQACKEGNV 888 + +M + K+G + Sbjct: 1406 VQRMLELDKDGRL 1418 >UniRef50_Q5WTN0 Putative uncharacterized protein n=1 Tax=Legionella pneumophila str. Lens RepID=Q5WTN0_LEGPL Length = 2106 Score = 329 bits (844), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 228/676 (33%), Positives = 346/676 (51%), Gaps = 69/676 (10%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLARDKKGKLVQWEN-KGGDEFSLQ---DEVP 56 +Y R++C CGSP+YE+ C+DC PHL+A + +LV N K DEF L +E Sbjct: 481 IYFEMRKHCRCGSPIYELVACDDCGTPHLIAAQRGDQLVPPINIKVIDEFELDIDANEEE 540 Query: 57 VEHDATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRI--GVINNDSIPL-IIN 113 + D T ++ N + ++I + G + +D+QTR++ N+ + L ++ Sbjct: 541 LNQDDTNVVNDRYNDAESSVLIVNRNIN--GVIEEVIDKQTRQLIEPTSGNEHLRLRVLG 598 Query: 114 DIEQ--VCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGP 171 D +C G G ++ F+ A +G PF + I+P++LE+ D G P Sbjct: 599 DSGSGLICPCCQGGSHGNRHRKLFQEARIGAPFSLGIILPSLLEFAPD--------GDDP 650 Query: 172 DSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANA 231 P RGRRL+TF DSRQGTAR+A ++QQE+ER R+RG V + Q+ Sbjct: 651 AEHPYRGRRLLTFNDSRQGTARIAAKLQQESERDRIRGLVYHLALRDGLMQS-------- 702 Query: 232 DLEKLAARAKQAREQAEEYRSW--GMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRT 289 D E AKQ +++ +E + + ++ K + + + + Q A+ K I + Sbjct: 703 DFE-----AKQLKDEIQELENIREHVKEEGK-THIENLLVNRKKQLASLSKPKPI----S 752 Query: 290 WTEMVNEL-KERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLE 348 + EM +L + +D + Y + + E F G L L+ M L REF RRPKR N+LE Sbjct: 753 FEEMSQKLTNQSSDFERMLSHYRNDISYENFKGPEGSLSLARMFLIREFGRRPKRLNNLE 812 Query: 349 TQGLVQVGYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWI 408 + GLV V Y L I ++ +G L DW FLK+ LD +VR ++ +++K+W+ Sbjct: 813 SMGLVSVQYPALNNITRA-----HEGFNLIDWISFLKIALDFFVRAGGSLEIPEKIKSWL 867 Query: 409 GSRFSSKFVRNPESKDPEDNQNRRWPQ----IRNGN----VSHRLAKLLMLGAGFKTVNA 460 G F + + + D E +RRWP+ + NGN L ++L + Sbjct: 868 GMPFPQTRLVDQDRVDKEKT-DRRWPRAYYTLPNGNKRLNYQSTLVRILACALKVDIETS 926 Query: 461 ATIDIINTWLKEAWAQLTGPLAVLKPD-GNRFYLPKEHMTFSLITDAWICPVTNKILDTA 519 D ++ L AW LT +L + G R LP + F+ IT+AWICP+T + LDT Sbjct: 927 LGADKVDAALTSAWRALTEGSGILYSNSGGRRVLPLSQIAFTPITNAWICPLTRRFLDTT 986 Query: 520 FKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLA---KARDWVS 576 + +TPYLP H + E T QK+ +P D+ A LA +ARDW+S Sbjct: 987 IQDITPYLPLHYTNE--------TVKCQKIEIP---LYDQPFGGDASDLAQVIRARDWLS 1035 Query: 577 HDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCS 636 I Q + E +W +NDR +E Y+ TAEHSAQQ + RL YEK FK+G LN+L+CS Sbjct: 1036 KQESIIQFKEEGLWPVLNDRAIELSPYFVTAEHSAQQPAYRLDRYEKAFKSGDLNLLSCS 1095 Query: 637 TTMEMGVDTDRVMTLA 652 TTMEMG+D + T+A Sbjct: 1096 TTMEMGIDIGGIATVA 1111 Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 62/212 (29%), Positives = 107/212 (50%), Gaps = 15/212 (7%) Query: 701 DIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTR--ITGVHYTDRYLQNPVALALL 758 +I+I K L+G L FGQRFW ++ + SL +NT I + Y DRYL +P+ +ALL Sbjct: 1898 EIEILKDLDGSLQGFGQRFWKLVSSSSPNVASLFSNTSLDIEAISYHDRYLFSPLPVALL 1957 Query: 759 GSILRPLKTKLTDG------AEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAA 812 ++ ++T + E+T + + ++ + +W+ + + ++ A Sbjct: 1958 LELITGIRTLVGTSRWNNPFIEITTNNESANLNKRSCFIWDNWLDL-EARNGAIINSLDY 2016 Query: 813 LGRPVELTVFDSPRDIPHHRKLTVTFEDGQVLKIRFDQGMGYWRINFSSQWHYFDFRD-D 871 LG ++ + D + + H R L V F VL +R DQG+ YW+ N S+ F+F D D Sbjct: 2017 LGIEGKIKLLDKNKSL-HGRMLEVKFSSNYVLTVRLDQGVSYWKANNYSKQKIFNFGDPD 2075 Query: 872 VSFQLVKMAQACKEGNVANSEESWATDVLVEV 903 +S Q +++A E NV + T V ++V Sbjct: 2076 LSNQGIQLA----ELNVDIESNYFPTHVFIKV 2103 >UniRef50_A0KWV0 DEAD/DEAH box helicase domain protein n=2 Tax=Gammaproteobacteria RepID=A0KWV0_SHESA Length = 2120 Score = 270 bits (690), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 209/690 (30%), Positives = 333/690 (48%), Gaps = 89/690 (12%) Query: 1 MYVNQRQNC--DCGSPVYEVAFCNDCNEPHLLAR---DKKGK--LVQWENKGGDEFSLQD 53 ++V++RQ C C SPVYE+ C C EP L A D G L+ E+ DE+S D Sbjct: 500 VFVSERQKCLDGCSSPVYELTHCAVCKEPSLAASLVIDSHGNRVLLSREHDDLDEYS--D 557 Query: 54 EVPVEHDATEEKVEKENSFQPPLIIAAGETSEA------GYTLQR-LDRQTRRIGVINND 106 E+ D E V E+ + + I + ++S+ G +++ LD TRR+ + + Sbjct: 558 EI---EDNQEIDVILEHKTRNNVQIFSSQSSDLERYKSFGSSVEAYLDLSTRRVKTRSEN 614 Query: 107 SIPL--IINDIEQVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDE 164 ++ + D + + C F+RALLG PF + N+VP +L + Sbjct: 615 TLAVRYTTADRDSYLRCACCDATEAVASSTFKRALLGAPFLMGNLVPELLRHIPR----- 669 Query: 165 GKEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTS 224 DSL G RLITFTDSRQGTAR + ++Q ++ER R + ++ R+ S Sbjct: 670 ----KNDDSL--FGARLITFTDSRQGTARFSAKLQLDSERKWCRSKIYREIA--MRSSDS 721 Query: 225 TAPNANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATI 284 N ++A K E + Q K+ + E+L++ + Sbjct: 722 ELYND----PQIATFNKILDSNPEAATKDFILSQIKI---RLEELKK------------V 762 Query: 285 LVSRTWTEMVNELKERADIR--GPVLQYNHYLKPEVFNENGGPLK----LSEMLLFREFM 338 W V L +IR L Y+ P ++ L+ L+E+ L REF Sbjct: 763 SFKLNWVAAVELLANTDEIRLMAGDLDVEDYMLPGEYSNRDQRLENTKHLAELFLLREFA 822 Query: 339 RRPKRTNSLETQGLVQVGYQGLEKIHKSPL-----HWQEKGLTLDDWRDFLKVTLDHYVR 393 RRPK N+LET GLV++ Y L+ I + L W GL LDDW+ +LK+ LD YVR Sbjct: 823 RRPKNANNLETLGLVKIVYPALDSITEEDLRVGCREWGTLGLNLDDWKSYLKIILDFYVR 882 Query: 394 ESNFTQLDDELKNWIGSRFSSKFVRNPESKDPEDNQNRR---WPQIRNGNVSHRLAKLLM 450 E+ + NW+G + ++ ++ PE + + + + +P + GN H+L ++L Sbjct: 883 ENTLIDIHSYQVNWMGGKLFARLLQGPEFEGKSEEEKKAIWAFPSVNKGN-QHKLVRMLE 941 Query: 451 LGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLK--PDGNRFYLPKEHM------TFSL 502 L + K ++ N L+ AW L +L+ DGN+ + H+ +F L Sbjct: 942 LFS--KRSAKDNPELFNGILRFAWRTLINK-EILQHYKDGNKEWREGYHLKLSNSASFEL 998 Query: 503 ITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQE 562 IT+A +CP+TN+ LDT+F+G++PYL + E + + + P++ + + SQ Sbjct: 999 ITNASVCPITNRWLDTSFRGISPYLTSKTEIEDCLVKNTNCKIPHPA--PDLLQSNSSQS 1056 Query: 563 DYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYE 622 R+W+ H+ I ++ + +W DI D + R+AEHSAQQ ++ L+ +E Sbjct: 1057 --------LRNWIRHNEFILNMKKQGIWRDITDAALLPPVMLRSAEHSAQQYTDNLKLFE 1108 Query: 623 KMFKNGQLNVLNCSTTMEMGVDTDRVMTLA 652 K FK LNVLNCSTTMEMGVD ++ +A Sbjct: 1109 KAFKKDFLNVLNCSTTMEMGVDIGSLVMVA 1138 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/195 (29%), Positives = 90/195 (46%), Gaps = 6/195 (3%) Query: 683 LNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGV 742 L + L ++ T+ + + DI +LN P ++FG + LF + + + I V Sbjct: 1907 LEDLALKSELTSNIALIDDIT--TKLNVPFNRFGSSIF-ALFEEIIPRFKNVFDQGIENV 1963 Query: 743 HYTDRYLQNPVALALLGSILRPLKTKL-TDGAEVTLDTLFKDKDRPGNRPFHDWMSIADF 801 YTDRYL +P++L L+ SI +K + E+ DR ++ +I + Sbjct: 1964 TYTDRYLISPISLGLIISIFAHVKAIMGIRDFEIITCHPSAAGDRKPYCIADNFSNIDEV 2023 Query: 802 QDFADQWFAAALGRPVELTVFDSPRDIPHHRKLTVTFEDGQVLKIRFDQGMGYWRINFSS 861 DF D + G V F S DI H R LT T ++G+V++ FDQGMGYW Sbjct: 2024 NDFIDS-VCSTYGINV-YPEFASKNDIDHGRCLTFTLKNGEVVRFLFDQGMGYWATRRPY 2081 Query: 862 QWHYFDFRDDVSFQL 876 FDF +F + Sbjct: 2082 SRIKFDFESVGAFDI 2096 >UniRef50_A3EKW9 Dead/deah box helicase domain protein n=3 Tax=Vibrionaceae RepID=A3EKW9_VIBCH Length = 1629 Score = 261 bits (667), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 217/693 (31%), Positives = 345/693 (49%), Gaps = 102/693 (14%) Query: 3 VNQRQNCDCGSPVYEVAFCNDCNEPHLLARDKKGKL--------VQWENKGGDEFSLQ-- 52 +++R++C CGSP++E+ CN C LLA + K + + D+F+L Sbjct: 460 MSRRESCSCGSPMFEMVSCNGCGT-SLLATNVKTAADSGDTFLHLTKPDSAIDDFALDIA 518 Query: 53 ---DEVPVEHDATE-EKVEKENSFQPPLIIAAGE------------TSEAGYTLQRLDRQ 96 D+V D E E+ ++ P GE SE G+ + R++ Sbjct: 519 GEDDDVSSYEDEEEGEQYDRFGLISPLPGDKTGEYWLDNQRKATTAKSEGGFLIHRVEGY 578 Query: 97 TRRIGVINNDSIPLIINDIEQVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEY 156 +G ++ + C C + + FR G PF ++ ++PT+LEY Sbjct: 579 RNSLGALS----------LRCPC----CQQTKVKNFEFFRYFKNGAPFMLSTVIPTLLEY 624 Query: 157 CQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILS 216 CQD E K+G P GRR+ITFTDSRQGTAR + + QQ+AER LR ++ ++ Sbjct: 625 CQD-GKKEQKKG------PWNGRRMITFTDSRQGTARFSAKSQQDAERQFLRSTLFHLIL 677 Query: 217 WHQRTQTSTAPNANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQ--AEQLEQAYQ 274 ++ + +A+LEK Y+ M D AK+S+ + E +E Sbjct: 678 DKAIRESGSGSPESAELEK--------------YKK--MLDMAKMSEDEDMVEFVESKIA 721 Query: 275 AATGGKAATILVSRTWTEMVNELKERADIRGPVLQYNHYL--KPEVFNENGGPLKLSEML 332 + G A++ VS +W++ + L ++ +++ + ++ + + E+ P L+ +L Sbjct: 722 SLVG--ASSKPVSVSWSDAEDFLADQKEVQLWIKKFYEHFDDRMEMVTH---PKLLARLL 776 Query: 333 LFREFMRRPKRTNSLETQGLVQVGYQGL-EKIHKSPLHWQ------EKGLTLDDWRDFLK 385 L REF RPKR N+LET GLV + Y L +K + +P W EKG T +W +FL Sbjct: 777 LLREFNSRPKRQNTLETMGLVAMEYPLLAQKANTAPKEWLRFFDDVEKGRT--EWVNFLT 834 Query: 386 VTLDHYVRESNFTQLDDELKNWIGSRFS-SKFVRNPESKDPEDNQNRRWPQI-RNGNVSH 443 + ++ +VR +L E NWIG+++ + V ES + ++ WP++ R G++ Sbjct: 835 LAVNFHVRSLKAVRLTKEQLNWIGAKYQPTLLVAQGESTHIWNVES--WPKVTRGGSIQP 892 Query: 444 RLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEH-MTFSL 502 RLA+LL A +N L++AW L +VL P G+ F L E ++FSL Sbjct: 893 RLARLLSCAFNIDLDEAYNRAEVNEILRQAWNALQS--SVLTPSGDGFRLELEQQVSFSL 950 Query: 503 ITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEI---WKLDR 559 + + CP T KI+D G+TPYL + + + +++ P+ + D Sbjct: 951 LKEKHQCPHTQKIIDKPLLGITPYLNAS--------GEREEQLCRRLLTPDYPYPFGRDP 1002 Query: 560 SQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQ 619 + E LAK R+W D LI +R EN W+DI DRV+E Y+R AEHSAQ + +L+ Sbjct: 1003 KTGESVE-LAKTREWQEQDALI-DIRKENAWSDIADRVIERTPYFRVAEHSAQLKASQLR 1060 Query: 620 SYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLA 652 YEK FK G++NVL+CSTTMEMGVD + +A Sbjct: 1061 QYEKDFKEGRINVLSCSTTMEMGVDIGGISVVA 1093 >UniRef50_C3MEZ4 ATP-dependent helicase n=1 Tax=Rhizobium sp. NGR234 RepID=C3MEZ4_RHISN Length = 2042 Score = 255 bits (652), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 199/670 (29%), Positives = 314/670 (46%), Gaps = 63/670 (9%) Query: 1 MYVNQRQNCD-CGSPVYEVAFCNDCNEPHLLARDKK--GKLVQWENKG--GDEFSLQDEV 55 ++ ++ +NCD CG+PV E+ C +C EP L A + + GKL + +G DEF + E Sbjct: 450 LFPSKFENCDTCGAPVVELISCTECGEPMLEAEEDRSDGKL-RPSRRGLERDEFQYEAER 508 Query: 56 PVEHDATEEKVEKENSFQPPL---------IIAAGETSEAGYTLQRLDRQTRRIGVINND 106 E DA ++ + E L I+ A S++ + + + D Sbjct: 509 DGELDAEGDEDDDEEDGDASLAHKYMAKQTILFAATPSKSSRLISLSTKDWSVLAGPTTD 568 Query: 107 SIPLIIND---IEQVCSASGCGYRGMSGKQPFRRAL-LGGPFYVTNIVPTVLEYCQDFTS 162 S+ L + E VC CG + G R + G PF VT P +LE + Sbjct: 569 SVNLRYEEKSVAEGVCPC--CGVNALRGIDNLLRPVRFGAPFMVTAAAPILLEAVDPKPN 626 Query: 163 DEGKEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQ 222 E +LP GR LI+FTDSRQGTARM+ + Q E+ER+ +R + + Q Sbjct: 627 SE-------RTLPSSGRGLISFTDSRQGTARMSAKFQAESERNFVRSFI------YHAVQ 673 Query: 223 TSTAPNANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAA 282 + A A+ D ++A + Q E P + Q EQL + + Sbjct: 674 GALA--ADEDTPEVA-NVRTVIAQIEPLVGTN-PGLQLVLDGQREQLAKLTSES------ 723 Query: 283 TILVSRTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPK 342 ++ W +++ L R ++ +P + G KL+E LL RE RRP+ Sbjct: 724 --VIGVNWNALIDRLARRPEVE---FWMKEVWEPRDPDRFGDAHKLAEFLLLRELFRRPR 778 Query: 343 RTNSLETQGLVQVGYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDD 402 R NSLET L + + +E+I P + +G T++DWR FL ++H++R + +D Sbjct: 779 RANSLETLALACLKFPSVERIASMPPAFTRRGKTINDWRYFLTAIINHFIRAKSAVDVDR 838 Query: 403 ELKNWIGSRFSSKFVRNPESKDPEDNQNRRWPQI-RNGNVSHRLAKLLMLGAGFKTVNAA 461 WI + + + P D + WP++ RN + LL++G + + Sbjct: 839 RTMRWIAPQIKLRPLLGPGRSSGGDKRYVIWPKVPRNLSSLSTPQTLLIMGLKLDIADPS 898 Query: 462 TIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFK 521 D + L+ AW QL VL D + L + +TD + CP+T K ++ A Sbjct: 899 DRDDMQDCLQMAWDQLQ---QVLNADRDNPALDFSKSVVAPVTDGFRCPITRKAIEIAPF 955 Query: 522 GLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLI 581 GLTPY+ + + + T + MPEI + +D A +K DW++ D + Sbjct: 956 GLTPYVRINSAVSNAT----------PLRMPEIPFQLIAPDDPASAKSKISDWLNTDGRV 1005 Query: 582 AQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEM 641 A L+ +W +I++R+ Y R+AEHSAQQ S+RL+ YE FK+G++N+LNCSTTMEM Sbjct: 1006 ADLKKAGIWINISERIALFVDYARSAEHSAQQESQRLRQYETDFKDGRINILNCSTTMEM 1065 Query: 642 GVDTDRVMTL 651 GVD V T+ Sbjct: 1066 GVDIGSVSTV 1075 >UniRef50_B1ITS0 Helicase superfamily 1 and 2 ATP-binding n=14 Tax=Escherichia coli RepID=B1ITS0_ECOLC Length = 2104 Score = 253 bits (646), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 208/700 (29%), Positives = 334/700 (47%), Gaps = 88/700 (12%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLARDK-KGKLVQW-----ENKGGDEFSLQDE 54 ++ QRQ CDCG+PV+EV C+ C +L A+++ +G W DEF+L + Sbjct: 459 VWFEQRQYCDCGAPVFEVLRCSGCGSAYLSAKEEMRGDGTNWLVAQPAAAEVDEFALDVD 518 Query: 55 VPVEHDATEEKVEKENSFQPPLIIAAGE---TSEAGYTLQRLDRQTRR---IGVINNDSI 108 V E D ++++ + F LI + GE S T ++D + ++ I ++ +S Sbjct: 519 VYSE-DEDNDELDNNSQFDR-LIASDGEKYIISLEETTAGKIDSEAQKHYEINLLRPESR 576 Query: 109 PLIIND-IEQVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKE 167 N+ VC CG FR LG PF++ I+PT+LE+ + E + Sbjct: 577 GEGRNNSFACVC----CGDSQRKNNPLFRPLRLGAPFFLNEIIPTLLEFSPLPQTREEQL 632 Query: 168 GVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAP 227 G P GRRL+TFTDSRQGTAR++ R+QQ+A+++ LR + L+ +P Sbjct: 633 G------PFNGRRLLTFTDSRQGTARISARLQQDADKATLRALCYQELANINEPSAKLSP 686 Query: 228 NANADLEKLAAR------------AKQAREQAEEYRSWGM-------PDQAKLSQAQAEQ 268 A LE A+ K+A EE + P + LS AE Sbjct: 687 AHCALLESFIAQFSILPLKNSIDALKKAMVANEELSPADIQALKIIEPMVSSLSPDHAEA 746 Query: 269 LEQAYQAATGGKAATILVSRTWTEMVNELKERAD-IRGPVLQYNHYLKPEVFNENGG--- 324 + Q QA +G + + +T +E + + AD +RG F E G Sbjct: 747 M-QILQANSGNQQKKTMSWQTLSEQLVGSVDLADRMRGS------------FKELSGLDL 793 Query: 325 -PLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGLEKIHKSPLHWQ----EKGLTLDD 379 + ++ L+ EF RRPK +LE+ GLV + Y ++K+ P W+ + L + Sbjct: 794 TKQQFADFCLYSEFGRRPKNAWTLESLGLVAIHYPFIDKVTTCPQDWKTLLPDPDKQLAE 853 Query: 380 WRDFLKVTLDHYVRESNFTQLDDE-LKNWIGSRFSSKFVRNPESKDPEDNQNRRWPQIRN 438 WR+ LK+TLD ++RE++ ++E W+G+RF K ++ P+ K+ +++ WPQIR+ Sbjct: 854 WRNLLKITLDFFIRENSAVFYENEQYPRWMGARFPVKMLQGPDKKNKGQKRDQLWPQIRD 913 Query: 439 GNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHM 498 + + + L+ + + A ++N + E W + L + G + + K+ Sbjct: 914 RHYNRVIKLLIAVFPAIQPEQAHWKSLVNHLMIEVWDAIRPCLRQFE-SGYQLDI-KQQA 971 Query: 499 TFSLITDAWICPVTNKILDTAFKGLTPYLP--THISFEHLTLAQYDTFVAQKVTMPEI-- 554 F W CP T + LD G +PYLP I+ E L + MPE+ Sbjct: 972 EFYSPKQVWRCPYTRRALDVTLLGYSPYLPGSKEIAPEKAVL----------IEMPELPV 1021 Query: 555 --WKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQ 612 W+L E E + +W+ + LI R E +W+ +DR+ +YR EHSAQ Sbjct: 1022 RHWRLSGGGEIARE---ERLEWLESNALIQHAREEGLWSTRSDRLALKDSWYRLEEHSAQ 1078 Query: 613 QSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLA 652 ++ E+ Q EK FK+G++NVLNCSTTMEMGVD + +A Sbjct: 1079 RTPEQNQFNEKQFKSGKVNVLNCSTTMEMGVDIGGMSLVA 1118 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 64/204 (31%), Positives = 98/204 (48%), Gaps = 16/204 (7%) Query: 685 EFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEE-AQSLMNNTRITGVH 743 E +LPA T AV I + +QL+GPL FG RFW ++ H Q+ + IT V Sbjct: 1889 EDLLPALPTGAVR----INLCEQLDGPLEGFGSRFWSLVTQQHAGWKQAFTRHKEITHVE 1944 Query: 744 YTDRYLQNPVALALLGSILRPL-KTKLTDGAEVTLDTLFKDKD-RPGNRPFHDWMSIADF 801 Y+DRYL +P +LG IL L + + + A +T+ D + R N ++ W++ D Sbjct: 1945 YSDRYLNSPFTARMLGEILTELVEQGMAERASLTVCVKKLDYNSRQHNALYNAWLNEEDR 2004 Query: 802 QD-----FADQWFAAALGRPVELTVFDSPRDIPHHRKLTVTFEDGQVLKIRFDQGMGYWR 856 Q + + A + D+ + H R+LTVTF DG + D G+ YWR Sbjct: 2005 QQVVTTLLEEGYLGPAWPGAISWLTGDN-QSTEHGRELTVTFSDGSQHYVLLDMGLSYWR 2063 Query: 857 INFSSQWHYFDFRDDVSFQLVKMA 880 + +FDF V Q+ ++A Sbjct: 2064 CIEDT---FFDFALRVPQQVERLA 2084 >UniRef50_A6BZ17 Putative uncharacterized protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6BZ17_9PLAN Length = 2084 Score = 233 bits (594), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 201/695 (28%), Positives = 311/695 (44%), Gaps = 91/695 (13%) Query: 1 MYVNQRQNCD-CGSPVYEVAFCNDCNEPHLLARDKKGKLV---QW--ENKGGD-EFSLQD 53 +Y + R+ C C S V++V CNDC E +L A + + W E + D E L D Sbjct: 462 VYFDHRKVCQHCNSLVFDVLLCNDCGEVYLGAHEGDENQLFANPWNDETESDDFEIELND 521 Query: 54 EVPVEHDATEEKVEKENSFQPPLIIAAGETSEAGYTLQRL----------------DRQT 97 E +E +A E + A S AG T ++L D QT Sbjct: 522 EPSLEDEAQE--------------LDAVSVSPAGSTAKQLLCSRAPNDLMTGPVPYDTQT 567 Query: 98 RRIGVINNDSIPLIINDIEQ---VCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVL 154 ++ + + + E CG R Q F LGGPFY+ +P +L Sbjct: 568 GKLADDDARTASFLFALPEPDTGSLRCVACGGRDSDRWQQFSTIRLGGPFYLGVSIPILL 627 Query: 155 EYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEI 214 + K+ P GR++I+FTDSRQGTAR AVRMQ+E+E + +R + Sbjct: 628 SHAPVHQDQTKKK-------PFEGRQMISFTDSRQGTARFAVRMQRESEINYVRSFIYHK 680 Query: 215 LSWHQRTQTSTA-----PNANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQL 269 L W +A A LEK+A+ + P+ +L Q + ++L Sbjct: 681 L-WSLAKSVDSAELIRLEGTVASLEKVASTS---------------PELQQLYQEKLQKL 724 Query: 270 EQAYQAATGGKAATILVSRTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLS 329 Q ++ ATI W+++ + L + + + + +E P +L+ Sbjct: 725 NQ-LKSQQDTPQATI----AWSDLSSALAKEPAVEFFIRESTRQRYLSAIHE---PNELA 776 Query: 330 EMLLFREFMRRPKRTNSLETQGLVQVGYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLD 389 EM LFREF+ RP+R NSLET GL + + +E P W + +W FLK+ +D Sbjct: 777 EMFLFREFLSRPRRKNSLETLGLASIWFPAIEAC-DPPEEWLSRRRGKSEWCVFLKLCVD 835 Query: 390 HYVRESNFTQLDDELKNWIGSRFSSKFVRNPESKDPEDNQNRRWPQI-RNGNVSHRLAKL 448 + VR + +++ + WIG RF + + P+ +D RWP + RN + R+ L Sbjct: 836 YLVRTNYCSEIRRDYLRWIGVRFRQRELVPPD-QDIISRLQVRWPSVRRNRGRASRIMML 894 Query: 449 LMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWI 508 L L G N +I+ L+ AW QLT + + L + T ++ Sbjct: 895 LQLVLGLNLENDHDKTLIDVILRAAWRQLTMS-DIFNQTTEGYQLNFNKSEIRIATSGYL 953 Query: 509 CPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGL 568 CPVT + LD G++PY + +LA + +A +V MP + ++ + Sbjct: 954 CPVTRRFLDACIGGISPY------HDRRSLATFG--LAAEVVMPTLPFPFSRKDGHTVSP 1005 Query: 569 AKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNG 628 + DW++ D + R+ VW+ NDR+V Y+ TAEHS Q S RLQ EK F+ G Sbjct: 1006 DEVSDWLATDSVTQAARNAGVWSQFNDRIVFLSPYFETAEHSGQLSKSRLQFLEKRFRKG 1065 Query: 629 QLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGP 663 N+L+CSTTMEMG+D + L S + PGP Sbjct: 1066 MTNLLSCSTTMEMGID---IGGLTSVAMNNAPPGP 1097 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 7/162 (4%) Query: 697 ERVKDIQIHK---QLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPV 753 ++ QI+K +LNG + G FW + MN+ V Y+DRYL +P+ Sbjct: 1882 QKPNQCQIYKAGGELNGEVENLGVAFWGQIQKVAPWITEAMNDGPPLTVEYSDRYLVSPL 1941 Query: 754 ALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPF-HDWMSIADFQDFADQWFAAA 812 A+ LL +L+ L +++++ T+ D R H+W + + F Sbjct: 1942 AVRLLYEVLKELLAGSHGSSKLSIQTMKVDNHPVTGRCLHHNWQNERAQESTLKHVFNHV 2001 Query: 813 LGRPVELTVFDSPRDIPHHRKLTVTFEDGQVLKIRFDQGMGY 854 V L + H R + + + ++ I DQGMG+ Sbjct: 2002 AKSSVRLL---RKNKLAHARTMRIKWPGDRLAVITLDQGMGF 2040 >UniRef50_Q0FU13 Putative uncharacterized protein n=1 Tax=Roseovarius sp. HTCC2601 RepID=Q0FU13_9RHOB Length = 2003 Score = 233 bits (593), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 200/670 (29%), Positives = 304/670 (45%), Gaps = 82/670 (12%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLARDKKGK--LVQWENKGGDEFSLQDEVPVE 58 +++ QR++C CG+PV+E+ C++C P LLA ++ GK ++ + +E + +V E Sbjct: 449 IHLFQREHCGCGAPVFEIGACSECGTPWLLAHEESGKQRILHQSDSDTEEDDFRLDVEPE 508 Query: 59 HDATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGV--INNDSIPLIINDIE 116 D + V ++ + S + L+ D R + + +I L +D + Sbjct: 509 DDGDDASVSAAR------LVGPADDSHPVHQLRHSDAVVRDVLTDEPGHSTIRLCSHD-D 561 Query: 117 QVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPG 176 + C A R Q F G PF + N +P +LE +G +G P Sbjct: 562 RGCCAGAHHSRSRVAVQRF-----GSPFLLGNAIPQLLEA---MPRPDGIQGPAPMG--- 610 Query: 177 RGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKL 236 GRRL++FTDSRQGTAR A ++QQEAER R ++ WH Q+ A + Sbjct: 611 -GRRLLSFTDSRQGTARFAAKLQQEAERGLTRAAI-----WHA-VQSKAAGDPT------ 657 Query: 237 AARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNE 296 +A + R Q + R G P A L A +QL +A GG A WTEM+N Sbjct: 658 --KAAELRAQLDALR--GNPLMASLLPALEKQLAEA----EGGFAPV-----PWTEMLNT 704 Query: 297 LKERADIR---GPVLQYNHYLKPEVFNENGG------PLKLSEMLLFREFMRRPKRTNSL 347 L + D+R G V Q P GG P++L+++LL RE RRPK N++ Sbjct: 705 LAQVPDLRSFAGDVWQGRGASHP-----FGGLTLAREPVELAKLLLLREIFRRPKLQNNV 759 Query: 348 ETQGLVQVGYQGLEKIHKS---PLHWQEKGLTLDDWRDFLKVTLDHYVRES---NFTQLD 401 ET GL +V + LE+ + P +E G W + +D R + Q Sbjct: 760 ETMGLARVCWPELERQMEESDIPAPLREAGHEAPVWIALGQAAIDMAFRNRLAVHMQQTP 819 Query: 402 DELKNWIGSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAA 461 +L +WI R ++ V P + E + +RR + S L +L+ +A Sbjct: 820 VDLAHWISPRQAATQVLEPGVEFDETSASRRTHKWWTAYSSAGLVQLIYRLIDGDDESAT 879 Query: 462 TIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFK 521 ++ T L WA L + + + D + L + AW CPVT K+L Sbjct: 880 DLERCQTVLDALWATLRAKV-LTRADPGCWQLDFAKSALIGMESAWQCPVTGKLLPYTLA 938 Query: 522 GLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLI 581 G+TP S E + +VT+P + + AE A+ W++ D I Sbjct: 939 GITPN--DAASPEAMA----------EVTLPHLPVTSPAGLTGAE-RARVESWLTTDETI 985 Query: 582 AQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEM 641 A LR + +WTD+ DR + R EHSAQ E L+ YE F+ G++N+LNCSTTMEM Sbjct: 986 ATLRKKGLWTDLQDRAAAFAPFLRAQEHSAQIDRESLKGYEDAFRKGRINILNCSTTMEM 1045 Query: 642 GVDTDRVMTL 651 GVD V T+ Sbjct: 1046 GVDIPNVGTV 1055 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/179 (25%), Positives = 77/179 (43%), Gaps = 27/179 (15%) Query: 712 LSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKTKLTD 771 + FG+ FW ++ E L + V Y+DRYL+ P+ + LL +LR + + + Sbjct: 1822 VGHFGREFWKMV---REMRPQLSREVPLASVTYSDRYLRAPLPVRLLYEVLRTMPDR-NE 1877 Query: 772 GAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWF--------AAALGRPVELTVFD 823 + + T +D++ S +D D W AL V++ + Sbjct: 1878 ATTIMVRTSAQDRE-----------SRFPSRDIEDNWTEDRLRLQTMKALLPGVDVRIL- 1925 Query: 824 SPRDI-PHHRKLTVTFEDGQVLKIRFDQGMGYWRINFSSQWHYFDFRDDVSFQLVKMAQ 881 PR + PH R +T+ DG+ +I DQG+G W + FD DD Q +A+ Sbjct: 1926 -PRKLCPHPRSFELTWRDGRTARIHLDQGLGSWTVA-DHLAPRFDVEDDPKRQASALAK 1982 >UniRef50_B3Q0I0 Hypothetical conserved protein n=2 Tax=Rhizobium etli RepID=B3Q0I0_RHIE6 Length = 2041 Score = 224 bits (572), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 190/670 (28%), Positives = 297/670 (44%), Gaps = 68/670 (10%) Query: 1 MYVNQRQNC-DCGSPVYEVAFCNDCNEPHLLARDKKGKLVQWENK--GGDEFSLQDEVPV 57 +Y+++ C C +PV E+ C++C E L A + ++ + G DEF Sbjct: 453 VYLDRCDLCPTCSAPVLEIVSCSECGEVLLEAVELPNDRIRGTRRDLGKDEF-------- 504 Query: 58 EHDATEEKVEK-----------ENSFQPPLI---IAAGETSEAGYTLQRLDRQTRRIGVI 103 E +AT E E L+ I G + + L R +I + Sbjct: 505 EAEATREDDGTGDDADDEADDTEQEMVGDLVGTEILIGAAAGPDFRPLHLSRTDWKIEAV 564 Query: 104 NNDSIPLIINDIEQVCSASGCGYRGMSGKQPFRRAL-LGGPFYVTNIVPTVLEYCQDFTS 162 + + + ++Q S C +G R + G PF + + P +LE D Sbjct: 565 ASPGSASVYSALKQD-SCPCCQTVATNGVDKLLRPVRFGAPFMIASAAPILLEGV-DPEV 622 Query: 163 DEGKEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQ 222 D G P +GRR+++FTDSRQGTARM+ ++Q EAER+ +R V + Q Sbjct: 623 DRGVS-------PAQGRRVLSFTDSRQGTARMSAKIQAEAERNFVRSFVYHTV--QHSLQ 673 Query: 223 TSTAPNANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAA 282 TA +A+ ++EK A + + P L Q + L A + + G A Sbjct: 674 IGTAVDAS-EIEKTIASLEPVVAATRD------PALQNLLDQQRKALADASKPSLEGVA- 725 Query: 283 TILVSRTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPK 342 W +MV L +R ++ V + PE+FN++ KL++ LL REF RRP+ Sbjct: 726 -------WDDMVARLSQRKEVGQWVKEVWEPRDPELFNDS---RKLADFLLLREFARRPR 775 Query: 343 RTNSLETQGLVQVGYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDD 402 SLE+ GL ++ + ++ P + G ++DWR FL ++R ++ +D Sbjct: 776 TALSLESLGLARLRFAAIDNQTVVPPAFARHGKGIEDWRAFLYAITAFFLRGNSAVAIDP 835 Query: 403 ELKNWIGSRFSSKFVRNPESKDPEDNQNRRWPQI-RNGNVSHRLAKLLMLGAGFKTVNAA 461 + +WI + ++ +R P + + WP + R GN S LLM G G Sbjct: 836 AVMHWITPKAKTRALRAPGRTTDGERRFLGWPGVPRKGNPSTP-QLLLMNGLGLDRSRPD 894 Query: 462 TIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFK 521 +AW QL AV D +R L + + D + C +T +I+D A Sbjct: 895 HRADFEEIFDKAWHQLQ---AVFNSDPDRPALDLRKAHIAPLPDGYYCALTRRIVDIAPL 951 Query: 522 GLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLI 581 G +P + VA+ MP + + D+ EG K R+W+ + Sbjct: 952 GSSPLVRAS--------RHSARRVAEPRKMPSLPAVLLGDVDFDEGRRKIREWLDGSDDV 1003 Query: 582 AQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEM 641 LR + W +I+DRV Y R+AEHSAQQ + LQ YE FK G++N+LNCSTTMEM Sbjct: 1004 TALREDGAWNNISDRVALFADYSRSAEHSAQQDASVLQHYEAQFKAGKINILNCSTTMEM 1063 Query: 642 GVDTDRVMTL 651 GVD V T+ Sbjct: 1064 GVDIGSVSTV 1073 Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 61/244 (25%), Positives = 98/244 (40%), Gaps = 20/244 (8%) Query: 647 RVMTLASRSQQATIPGPEWHLNDEL-VVRSLGYKTVELNEFILPAKATNAVERVKDIQIH 705 R ASR +PG W + VV++ T + A +A R + I+ Sbjct: 1791 RTTAWASRDASPWLPGTRWGQPATMPVVKAAVNWTPSFSPLESKALLPSATSRYEPIK-- 1848 Query: 706 KQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPL 765 +L+ L+ FG + EE + + I V Y+D Y+++P+ + + L Sbjct: 1849 GELDRSLTLFGNGMASKIRGLLEEL-GIPKTSTIESVIYSDPYVKSPLVAKMFVDTVAAL 1907 Query: 766 KTKLTDGAEVTLDTLFKDKDRPGNRP------FHDWMSIADFQDFADQWFAAALGRPVEL 819 T V+L T DRPG +P +DW A + ++ A + V+L Sbjct: 1908 TKGSTPRPVVSLLT----GDRPGTKPGMQNAISNDWRDSAVAEMVLKEY---AKRKDVDL 1960 Query: 820 TVFDSPRDIPHHRKLTVTFEDGQVLKIRFDQGMGYWR-INFSSQWHYFDFRDDVSFQLVK 878 + + + + H R + V F G+ I FDQG G W + FDFRD Q Sbjct: 1961 DI--TFQRVAHGRYMHVRFPGGKEATIVFDQGFGAWNSVGNGGTSTRFDFRDPPVRQAES 2018 Query: 879 MAQA 882 M + Sbjct: 2019 MGRC 2022 >UniRef50_A5P8I3 Putative uncharacterized protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P8I3_9SPHN Length = 1988 Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 192/668 (28%), Positives = 293/668 (43%), Gaps = 88/668 (13%) Query: 1 MYVNQRQNC-DCGSPVYEVAFCNDCNEPHLLARDKKGKLV-QWENKGGDEFSLQDEVPVE 58 + + R C C S V+E+ C DC EP L A D ++V + + DEF +D Sbjct: 435 VLFDHRDQCPHCQSMVFEIQNCLDCGEPFLPADDMGDRIVPRRSDHDADEFR-EDSYRDR 493 Query: 59 HDATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDI-EQ 117 +++ ++ P +IA S+A T D + G ++ + + E Sbjct: 494 DHDDDDEEDEHEGIGHPRLIAINPKSKA--TATAFDVSS---GEFTGEAGHFHLTQLDEG 548 Query: 118 VCSAS-GCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPD---- 172 C A G RG PFR G PF N P +LE GV P Sbjct: 549 RCPACLGNKRRGRPAVFPFR---FGTPFLTQNAAPILLE------------GVSPHQAEH 593 Query: 173 SLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANAD 232 +LP GR+LI+F+DSRQGTAR A ++ ER +RG + + + T Sbjct: 594 ALPFDGRQLISFSDSRQGTARFAANIETNGERGFVRGFIYHAVQKAAQGSDLTDERREEL 653 Query: 233 LEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTE 292 L+K AA A + MP A + + + GG A IL W + Sbjct: 654 LKKKAALANLVAD---------MP-------AFKDDIAKIDAELAGGAATGIL----WKD 693 Query: 293 MVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGL 352 +V+ L I G + + + E F++N L+ +L RE RRP+ N++ET GL Sbjct: 694 LVSALASEPAI-GMMAKVWDLDRSERFHDNRE--ALARFMLLRELARRPRNANAMETLGL 750 Query: 353 VQVGYQGLEKIH--KSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGS 410 ++ + +E+I K P +KG +++DWR FL +D Y+R ++DD W+ Sbjct: 751 ARLRFPDIERIDPDKLPELVGQKGYSIEDWRGFLYYMVD-YLRGQFAIEVDDGDARWMPG 809 Query: 411 RFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDI----- 465 R + V P+ + P ++ WP + N R ++L A +A +D+ Sbjct: 810 RARPRNVIGPD-QPPGAKRDVYWPLV---NTKGRQPDSILLLA-----SAMNLDLTSQRD 860 Query: 466 ---INTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMT-FSLITDAWICPVTNKILDTAFK 521 IN + AW QL PL L G F L E + AW CP+T ++L Sbjct: 861 RHEINQVMHAAWNQLA-PL--LSGVGGTFSLRLEQKAEIEAVDRAWQCPLTRRVLPRLVF 917 Query: 522 GLTPYLPTHISFEHLTLAQYDTFVAQKVTMP-EIWKLDRSQEDYAEGLAKARDWVSHDPL 580 G +P L + + K +P E KL R++ + + R W+ D L Sbjct: 918 GRSP-----------NLVGSGSKIDGKAVLPVEFPKLPRTRPLSSGDKKEIRGWLVEDKL 966 Query: 581 IAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTME 640 + LR ++WT ++D+ Y R EHSAQQ RL+ +E+ FK G +N+L CSTTME Sbjct: 967 VQALRQLHLWTYLHDQAALATPYLRAEEHSAQQPPHRLREFEEQFKEGDINLLACSTTME 1026 Query: 641 MGVDTDRV 648 MGVD + Sbjct: 1027 MGVDIGSI 1034 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 70/256 (27%), Positives = 106/256 (41%), Gaps = 12/256 (4%) Query: 643 VDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDI 702 + TDR SR AT PG W + + + + I P V + Sbjct: 1733 ISTDRATGFFSRDMSATQPGERWGMGETHAIVAGTLSDPTAYSPINPEDLERQVAAGDQV 1792 Query: 703 QIHKQLN-GPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSI 761 ++ + P+ QFG+RF L EA + + + Y DRYL +P+ + L Sbjct: 1793 ELMQGFGQCPVGQFGKRFGSKL-KQQMEAAGVWRPGSLVRITYADRYLNSPLTMLLFLRT 1851 Query: 762 LRPLKTKLTDGAEVTLDTLFK--DKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVEL 819 L L + V +D L + DR + HDW D + A + G V+L Sbjct: 1852 CEALSADLKADSPVEVDILVQPLKNDRSPYQIKHDWTYEDDRAEVA-ELLGEKFGLDVDL 1910 Query: 820 TVFDSPRDIPHHRKLTVTFEDGQVLKIRFDQGMGYWRINFSSQWHYFDFRDDVSFQLVKM 879 V ++ H RKL + + DGQ + + DQG GYWRI S H DFR + Q ++ Sbjct: 1911 QVT---QNSDHGRKLELEYVDGQKVLVLLDQGFGYWRIAGSPPRH--DFRSAPAAQASEL 1965 Query: 880 AQACKEGNVANSEESW 895 ++ VA ES+ Sbjct: 1966 LRSSTA--VAGVGESY 1979 >UniRef50_A1U8P4 DEAD/DEAH box helicase domain protein n=2 Tax=Alteromonadales RepID=A1U8P4_MARAV Length = 685 Score = 176 bits (445), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 99/211 (46%), Positives = 124/211 (58%), Gaps = 10/211 (4%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHD 60 +YV QR CDCGSPVYE FC+DC PHL A L Q DEFSLQ E D Sbjct: 470 VYVQQRGKCDCGSPVYEAGFCDDCKTPHLTAEHAHPYLRQASPYVIDEFSLQ-----EDD 524 Query: 61 ATEEKVEKE--NSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQV 118 + + + + +S + +IA T + + LD T +G ++ ++ I E+ Sbjct: 525 SDDSGISERAGSSLKGRAVIAP--TPHEAFVSEDLDLDTAELGKLDAENSITISQADERD 582 Query: 119 CSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRG 178 CG G + R++ LG PFYV+N VPTVLE+C D S E +G P+SLP RG Sbjct: 583 AICVNCGSAGKTAGGFLRKSYLGAPFYVSNAVPTVLEFCPD-PSREDCDGASPESLPARG 641 Query: 179 RRLITFTDSRQGTARMAVRMQQEAERSRLRG 209 R+LITFTDSRQGTARMAVRMQQEAERSRLRG Sbjct: 642 RKLITFTDSRQGTARMAVRMQQEAERSRLRG 672 >UniRef50_B0MUI1 Putative uncharacterized protein n=3 Tax=cellular organisms RepID=B0MUI1_9BACT Length = 2047 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 140/497 (28%), Positives = 220/497 (44%), Gaps = 79/497 (15%) Query: 178 GRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLA 237 GR+ ITFTDSRQG+AR A+ + Q+ ERS +R S+ L A+ L + Sbjct: 647 GRKYITFTDSRQGSARSAMGLNQDVERSWIRASIFHKL-------------ADMRLNDVK 693 Query: 238 ARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNEL 297 E+AE Y ++ + + L E+ +Q + G +W ++ L Sbjct: 694 PGGLTPDEEAE-YNAY-LSIREHLPTLLFEKFKQLEKKKNGIPVIPNPEEVSWGQISQSL 751 Query: 298 KERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGY 357 + ++ + Y H K + LL +F PKR NSLET G V++ Y Sbjct: 752 ENDSNFKK---LYEHVDKARGRKNFENATDYLKALLVDQFGWIPKRANSLETMGFVRLVY 808 Query: 358 QGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWI--------- 408 L K K P Q++ T DW++FLK+ +D+ +R L K+++ Sbjct: 809 PAL-KNAKCPALLQKR-CTDTDWQNFLKICMDYVIRGGRHYMLSGAYKDYLTQNKYCSPI 866 Query: 409 ----------GSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGA----- 453 GS S F N SK +NQNR +L+L A Sbjct: 867 YPSNSELRKNGSPVSKWFKVNVSSKGINENQNRL---------------VLLLCAVLDYD 911 Query: 454 GFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFY---LPKEHMTFSLITDAWICP 510 +N I IN+ L AW L + N+ Y L + + LI ++CP Sbjct: 912 DISQINQIKIADINSILDAAWDFLKQNVLEATDVENQGYMLDLMGDKVKLQLIEKGYLCP 971 Query: 511 VTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKL---DRSQEDYAEG 567 V N I+D F G +P + +IS E+ +D F + + ++ D+++++ E Sbjct: 972 VDNVIIDAPFCGYSPRMNGYISREN-----FDRFKIKTEFVNPLFPFKSADQTEKNVME- 1025 Query: 568 LAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKN 627 W+ + ++ ++ V+ +N RV + +AEHSAQQSSE L YE+ F Sbjct: 1026 ------WIEKN--FSEQKAAGVFGVMNSRVFASKPIFISAEHSAQQSSEDLDRYEREFNE 1077 Query: 628 GQLNVLNCSTTMEMGVD 644 G++N+L+CSTTMEMGVD Sbjct: 1078 GKINILSCSTTMEMGVD 1094 >UniRef50_Q881M9 Helicase domain protein n=1 Tax=Pseudomonas syringae pv. tomato RepID=Q881M9_PSESM Length = 459 Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 43/90 (47%), Positives = 66/90 (73%) Query: 563 DYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYE 622 D +E + AR W++ +P + LR E +W+D++DR++EG Y+RTAEHSAQQ +L+SYE Sbjct: 2 DASEKILNARAWLNSEPKVIGLRDEGLWSDLHDRIIEGASYFRTAEHSAQQPKAKLKSYE 61 Query: 623 KMFKNGQLNVLNCSTTMEMGVDTDRVMTLA 652 F++G +N+L+CSTTMEMG+D + +A Sbjct: 62 TQFRSGHINLLSCSTTMEMGIDISGITAVA 91 >UniRef50_D1P9G0 Putative DEAD/DEAH box helicase n=1 Tax=Prevotella copri DSM 18205 RepID=D1P9G0_9BACT Length = 2132 Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 142/577 (24%), Positives = 226/577 (39%), Gaps = 121/577 (20%) Query: 133 QPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQGTA 192 Q FR L F + P++L+ D+G G L G++ I+F DSRQ A Sbjct: 610 QKFR---LSADFISRMMAPSILDQL-----DKGDSKTGGIVLHD-GQQYISFVDSRQAAA 660 Query: 193 RMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARAKQAREQAEEYRS 252 + ++ E ER ++ L + + L + A + + Sbjct: 661 KATLKQNLEQERMWFNSTIYHELCRRKANGLTKEAAMAQILAAVQADPMSMMKYTPMMAN 720 Query: 253 WGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERADIRGPVLQYNH 312 PD K+ Q Q +++ Y TW+E+V LK D PV + Sbjct: 721 LQSPD-PKVVQKQLDEMSCKYM--------------TWSEIVELLKN--DPYCPVFA-SV 762 Query: 313 YLK-----PEVFNENGGPL-----KLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGLEK 362 ++K EV E+G P K + ++ RP S ET GL + Y LEK Sbjct: 763 FVKRSGDSDEV--EDGLPSDEIIDKYIQSIMVMYLAHRPASAASPETLGLFETCYPQLEK 820 Query: 363 IHKSPLHWQE---------KGLTLDDWRDFLKVTLDHYVRESNFTQL----DDELKNWIG 409 I K P ++ +T +DWR+ ++V LD+ VR + L +D++ + Sbjct: 821 I-KLPKAVEDFNDLLDNPVNQITEEDWRNLMQVYLDYTVRSNQSFYLRIPGNDKIDIFST 879 Query: 410 SRFSS-KFVRNPESKDPEDNQNRRWPQIRNGNVS-----HRLAKLLMLGAGFKTVNAAT- 462 RF++ K R P +K P++ G VS L L+ T+N A Sbjct: 880 VRFATEKPRRRPFNK----------PKLEEGKVSTARIVRYLCALIARDDNTLTMNDAQR 929 Query: 463 --IDIINTWLKEAWAQLTG-PLAVL---------------KPDGNRFYLPKEHMTFSLIT 504 I+ + W LTG +L K + RF L + F L Sbjct: 930 QYFHEISAVIDSLWETLTGDEYKILQVGQRLDDTGHFVNEKDNAPRFNL--NDLCFKLYD 987 Query: 505 DAWIC---------PVTNKILDTAFKGLTPYL--PTHISFEHLTLAQYDTFVAQKVTMPE 553 D ++C V + + FK +PYL T + Q++ F K + E Sbjct: 988 DVYLCDTKADGNRHAVCLRPIGNNFKRFSPYLEGTTPVELREDLHEQWEAFPYYKGSAKE 1047 Query: 554 IWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVW-TD--INDRVVEGGFY---YRTA 607 K ++ E +A+ +H L L + N+W TD +DR+ + + + Sbjct: 1048 GDK--KTIESWAK---------THRAL---LWNNNIWGTDGVFSDRLEDIHAFPNLFVQQ 1093 Query: 608 EHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVD 644 EH+AQ + + FK+ +N+L CSTTMEMGVD Sbjct: 1094 EHTAQVDKSVARGLQSKFKDHTINILACSTTMEMGVD 1130 >UniRef50_UPI0001BC7B8F putative helicase related protein n=1 Tax=Bacteroides sp. D2 RepID=UPI0001BC7B8F Length = 2100 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 128/565 (22%), Positives = 232/565 (41%), Gaps = 100/565 (17%) Query: 133 QPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQGTA 192 Q FR + F + P+VL + +S + + + D G++ I+F DSRQ A Sbjct: 587 QKFRTS---ADFISRQMAPSVLNQLEKGSSKDPAKIMLHD-----GQQFISFADSRQLAA 638 Query: 193 RMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTA----PNANADLEKLAARAKQAREQAE 248 + ++ E ER + ++ LS Q+ ++ T +A+L LA + + Sbjct: 639 KATLKQNLEQERLWVYSTIFHALS-KQKAESGTVQQEIDKVSAELVALALKGDTDQ---- 693 Query: 249 EYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILV-SRTWTEMVNELKERADIRGPV 307 + + +K QA Q+++ + T + A +L+ S+ T + +R+ + Sbjct: 694 ------LAEASKKIQALKAQMKKYF---TWQEIADLLMKSKYCTVFCRQFVKRSGDSDEL 744 Query: 308 LQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGLEKI---- 363 Q + K G K L+ RP + ET GL Y L+ I Sbjct: 745 GQDGNIPK-------GVLEKYVHSLMVMYLSTRPASAAAPETMGLFHTHYPQLQDIALPE 797 Query: 364 ----HKSPLHWQEKGLTLDDWRDFLKVTLDHYVR--ESNFTQLDDE--LKNWIGSRFSS- 414 L + ++ +DW L++ +D+ VR +S F +L + + + RF++ Sbjct: 798 AVEAFNQVLDIESNRISQEDWHHLLQIFMDYTVRSNQSLFLKLSNTNPIDIFACERFATE 857 Query: 415 ----KFVRNP--ESKDPEDNQNRRW---------PQIRNGNVSHRLAKLL--MLGAGFKT 457 + ++ P E P ++ R+ P+++ G+V + L ++ A ++ Sbjct: 858 KPRRRPIKKPVVEVGKPSHSRIVRYLCGLIKREKPELKTGDVYRQYFNQLAAVVDALWED 917 Query: 458 VNAATIDIINTWLKEA--WAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWIC------ 509 VNA N L+E+ W + RF L ++ F L D ++C Sbjct: 918 VNAPK----NHLLEESVHWNSSNQQFERDSNEATRFNLA--NLCFKLYEDVYLCDTNSDS 971 Query: 510 ----PVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYA 565 V + ++ FKG PYL I E + L+ + E+W++ E + Sbjct: 972 STRHTVCLRPIENYFKGFAPYL---IGNEVVELSN---------DLHEVWEVYPYYEGTS 1019 Query: 566 E--GLAKARDWV-SHDPLIAQLR---SENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQ 619 E + K W +H L+ E V+ + + + + AEH+AQ E + Sbjct: 1020 EEVTIEKVEAWAETHRSLLWNHHIWGKEGVFGNRLTEIHQVPNLFIQAEHTAQVDKEVSR 1079 Query: 620 SYEKMFKNGQLNVLNCSTTMEMGVD 644 S + FK+ +N+L CSTTMEMGVD Sbjct: 1080 SLQSEFKDHAINILACSTTMEMGVD 1104 >UniRef50_A3EKW8 Copper-binding protein n=1 Tax=Vibrio cholerae V51 RepID=A3EKW8_VIBCH Length = 429 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 17/164 (10%) Query: 699 VKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALL 758 +K + +H++LNG + FG +FW +F E +LM + ++ Y+DRYL P+ L+L Sbjct: 231 LKKVVVHEELNGAVKDFGFKFWSYVFKHSPELMALMKSQQLQSATYSDRYLAAPLPLSLC 290 Query: 759 GSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPV- 817 S L+ L + +P M++ D +F D++ + R + Sbjct: 291 FSALKFLGEHYKGCTTQVVTGELHRSAKP--------MTVQD--NFEDEYSRDKVFRLIA 340 Query: 818 -----ELTVFDSPR-DIPHHRKLTVTFEDGQVLKIRFDQGMGYW 855 ++ P+ ++PH R L + F+ G + + DQG GYW Sbjct: 341 DATEANMSFRSRPKYELPHARVLELVFDSGTKVTLWLDQGFGYW 384 >UniRef50_Q0AZK9 Helicase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AZK9_SYNWW Length = 1578 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 3/56 (5%) Query: 608 EHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGP 663 EH+AQ SE+ +Y+ FKN ++NVL+CSTT EMGVD + T+ R+ P P Sbjct: 943 EHTAQLGSEKAYTYQNDFKNEKINVLSCSTTFEMGVDVGSLETVFMRNMP---PSP 995 >UniRef50_Q3M825 DEAD/DEAH box helicase-like n=1 Tax=Anabaena variabilis ATCC 29413 RepID=Q3M825_ANAVT Length = 2093 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 33/51 (64%) Query: 605 RTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRS 655 R+ EH+AQ L+ E F+ GQ+N+L+CSTT+EMGVD + + R+ Sbjct: 1085 RSQEHTAQLGVTELERRENRFRRGQINLLSCSTTLEMGVDIGELQAVVLRN 1135 >UniRef50_B0K504 DEAD/DEAH box helicase domain protein n=9 Tax=Bacteria RepID=B0K504_THEPX Length = 1607 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 37/55 (67%) Query: 605 RTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQAT 659 +++EH+AQ ++E + +K F G++NVL+CSTT E+GVD + T+ R+ T Sbjct: 1005 KSSEHTAQLTTEEAGNIQKKFYEGEINVLSCSTTFELGVDVGELETVFMRNVPPT 1059 >UniRef50_B4VWS3 Type III restriction enzyme, res subunit family n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VWS3_9CYAN Length = 2104 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 33/51 (64%) Query: 605 RTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRS 655 R+ EH+AQ L+ E F+ GQ+N+L+CSTT+EMGVD + + R+ Sbjct: 1084 RSQEHTAQLGVGELEKRENRFRRGQINLLSCSTTLEMGVDIGELQAVVLRN 1134 >UniRef50_C6PTC5 Helicase domain protein n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PTC5_9CLOT Length = 678 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 12/88 (13%) Query: 580 LIAQLRSENVWTDINDRVVEGGFYYR------------TAEHSAQQSSERLQSYEKMFKN 627 + + R + T++N+R YYR EH+AQ +S +K F++ Sbjct: 30 ICPEFRCDGELTELNNRQPSKYDYYRKLYSDRRIVPMIAKEHTAQLTSTAASELQKKFES 89 Query: 628 GQLNVLNCSTTMEMGVDTDRVMTLASRS 655 G++NVL+CSTT EMGVD ++ + R+ Sbjct: 90 GKVNVLSCSTTFEMGVDVGQLEAIFMRN 117 >UniRef50_UPI0001C373E9 helicase n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C373E9 Length = 1588 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 8/60 (13%) Query: 592 DINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTL 651 DI+D +V+ EH+AQ E+ + Y+ F N +NVL+CSTT EMGVD + T+ Sbjct: 972 DISDLIVK--------EHTAQLDIEKAKEYQDKFVNKAINVLSCSTTFEMGVDVGDLETV 1023 >UniRef50_B1I5A5 DEAD/DEAH box helicase domain protein n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I5A5_DESAP Length = 1589 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 35/51 (68%) Query: 605 RTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRS 655 R EH+AQ ++ + Y++ FK G++++L+CSTT E+GVD + T+ R+ Sbjct: 979 RVEEHTAQLGRKKAREYQEAFKKGRIHLLSCSTTFELGVDLGDLDTVFLRN 1029 >UniRef50_D1BVL7 DEAD/DEAH box helicase domain protein n=1 Tax=Xylanimonas cellulosilytica DSM 15894 RepID=D1BVL7_XYLCX Length = 1525 Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust. Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 8/111 (7%) Query: 554 IWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVE-----GGFYYRTAE 608 +W+ DR + +A R + QL+ D +D + G R E Sbjct: 875 VWRCDRCRR-FAS--VNVRGVCPTNGCRGQLQHVTAEPDPSDHYAQNYLALAGHPLRAEE 931 Query: 609 HSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQAT 659 H+AQ + + ++ F G++NVL+CSTT E+GVD + ++ R+ T Sbjct: 932 HTAQLTGDVASQLQEQFVAGEVNVLSCSTTFELGVDVGELQSVMLRNVPPT 982 >UniRef50_Q2SCB8 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SCB8_HAHCH Length = 1891 Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 6/55 (10%) Query: 590 WTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVD 644 +T+I +VV R+ EH+A S+E + E F + ++NVL+C+TTME+GVD Sbjct: 898 YTEIQSQVV------RSREHTASLSTELREFIESEFFDSKINVLSCTTTMEVGVD 946 >UniRef50_C1XMC1 Helicase family protein with metal-binding cysteine cluster n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XMC1_MEIRU Length = 917 Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust. Identities = 31/76 (40%), Positives = 40/76 (52%), Gaps = 12/76 (15%) Query: 578 DPLIAQLRSENVWTDINDRVVEGGFYYRTA---------EHSAQQSSERLQSYEKMFKNG 628 DPL +LR EN + N FY TA EH+AQ S+ + E+ F+ G Sbjct: 116 DPLRVRLR-ENAEREAN--AFFSAFYRLTAQNLGGLEAREHTAQVPSKEREQREEDFRAG 172 Query: 629 QLNVLNCSTTMEMGVD 644 +L VL CS TME+GVD Sbjct: 173 RLPVLYCSPTMELGVD 188 >UniRef50_Q2SFN9 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster n=2 Tax=Proteobacteria RepID=Q2SFN9_HAHCH Length = 1745 Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 3/61 (4%) Query: 587 ENVWTDINDRVVEGG---FYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGV 643 +N++ +I + +V G F EH+AQ S ++ + EK F+ L L CS TME+GV Sbjct: 933 KNLYQNIAEFLVAGNRTFFELEAREHTAQVSIDKREEREKQFREATLKTLFCSPTMELGV 992 Query: 644 D 644 D Sbjct: 993 D 993 >UniRef50_D1CII2 DEAD/DEAH box helicase domain protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CII2_THET1 Length = 1698 Score = 43.5 bits (101), Expect = 0.042, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 25/40 (62%) Query: 605 RTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVD 644 R EH+ Q ER + E F+ G+L +L CS TME+G+D Sbjct: 939 RAGEHTGQVDLERRRQREDQFRKGELPILYCSPTMELGID 978 >UniRef50_A1UB29 DEAD/DEAH box helicase domain protein n=2 Tax=Mycobacterium RepID=A1UB29_MYCSK Length = 1543 Score = 43.1 bits (100), Expect = 0.044, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 33/51 (64%) Query: 605 RTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRS 655 R EH+AQ ++ + ++ F G++NVL+CSTT E+GVD + ++ R+ Sbjct: 943 RAHEHTAQWDAKTAANIQREFITGRVNVLSCSTTFELGVDVGDLQSVVMRN 993 >UniRef50_B2JBC8 DEAD/DEAH box helicase domain protein n=4 Tax=Cyanobacteria RepID=B2JBC8_NOSP7 Length = 1782 Score = 42.7 bits (99), Expect = 0.061, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 9/90 (10%) Query: 575 VSHDPLIAQLRSENVWTDINDRVVEGGFYYRTA---------EHSAQQSSERLQSYEKMF 625 + DPL ++ N +I+ GFY A EH+ Q S++ Q E+ F Sbjct: 990 IPTDPLTSRRLQGNDKPNISVNQFFQGFYQTNALQIQTMEGREHTGQVSNKDRQEREEKF 1049 Query: 626 KNGQLNVLNCSTTMEMGVDTDRVMTLASRS 655 + GQL L CS TME+G+D + + R+ Sbjct: 1050 RQGQLAALFCSPTMELGIDISDLSVVHLRN 1079 >UniRef50_B1L4S0 DEAD/DEAH box helicase domain protein n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L4S0_KORCO Length = 1610 Score = 42.0 bits (97), Expect = 0.097, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 31/48 (64%) Query: 608 EHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRS 655 EH+AQ +++ + ++ F G +N+L+CSTT E+GVD + + R+ Sbjct: 978 EHTAQLTTDHASNIQQKFIRGDINILSCSTTFELGVDIGELEAIFLRN 1025 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P39393 Putative uncharacterized protein yjiV n=34 Tax=E... 1246 0.0 UniRef50_D0KMA4 DEAD/DEAH box helicase domain protein n=9 Tax=Ba... 844 0.0 UniRef50_B7VNH2 Putative uncharacterized protein n=1 Tax=Vibrio ... 729 0.0 UniRef50_B5WD63 DEAD/DEAH box helicase domain protein n=1 Tax=Bu... 718 0.0 UniRef50_A1K7X0 Putative helicase related protein n=3 Tax=Proteo... 658 0.0 UniRef50_Q5WTN0 Putative uncharacterized protein n=1 Tax=Legione... 628 e-178 UniRef50_B1ITS0 Helicase superfamily 1 and 2 ATP-binding n=14 Ta... 598 e-169 UniRef50_C3MEZ4 ATP-dependent helicase n=1 Tax=Rhizobium sp. NGR... 596 e-168 UniRef50_B3Q0I0 Hypothetical conserved protein n=2 Tax=Rhizobium... 587 e-166 UniRef50_A6BZ17 Putative uncharacterized protein n=1 Tax=Plancto... 581 e-164 UniRef50_A0KWV0 DEAD/DEAH box helicase domain protein n=2 Tax=Ga... 568 e-160 UniRef50_A5P8I3 Putative uncharacterized protein n=1 Tax=Erythro... 554 e-156 UniRef50_A3EKW9 Dead/deah box helicase domain protein n=3 Tax=Vi... 551 e-155 UniRef50_Q0FU13 Putative uncharacterized protein n=1 Tax=Roseova... 547 e-153 UniRef50_A1U8P2 Helicase domain protein n=1 Tax=Marinobacter aqu... 479 e-133 UniRef50_B0MUI1 Putative uncharacterized protein n=3 Tax=cellula... 434 e-120 UniRef50_UPI0001BC7B8F putative helicase related protein n=1 Tax... 396 e-108 UniRef50_D1P9G0 Putative DEAD/DEAH box helicase n=1 Tax=Prevotel... 390 e-106 UniRef50_A1U8P4 DEAD/DEAH box helicase domain protein n=2 Tax=Al... 242 3e-62 UniRef50_A3EKW8 Copper-binding protein n=1 Tax=Vibrio cholerae V... 167 2e-39 UniRef50_Q881M9 Helicase domain protein n=1 Tax=Pseudomonas syri... 146 5e-33 UniRef50_Q3M825 DEAD/DEAH box helicase-like n=1 Tax=Anabaena var... 143 3e-32 UniRef50_B4VWS3 Type III restriction enzyme, res subunit family ... 135 6e-30 UniRef50_B0K504 DEAD/DEAH box helicase domain protein n=9 Tax=Ba... 116 3e-24 UniRef50_C6PTC5 Helicase domain protein n=1 Tax=Clostridium carb... 109 4e-22 UniRef50_UPI0001C373E9 helicase n=1 Tax=Ruminococcus flavefacien... 100 2e-19 UniRef50_Q0AZK9 Helicase n=1 Tax=Syntrophomonas wolfei subsp. wo... 98 1e-18 Sequences not found previously or not previously below threshold: UniRef50_Q8NSE5 Distinct helicase family with a unique C-termina... 149 5e-34 UniRef50_D1BVL7 DEAD/DEAH box helicase domain protein n=1 Tax=Xy... 128 8e-28 UniRef50_B1L4S0 DEAD/DEAH box helicase domain protein n=1 Tax=Ca... 118 9e-25 UniRef50_Q2SCB8 Distinct helicase family with a unique C-termina... 117 2e-24 UniRef50_B1I5A5 DEAD/DEAH box helicase domain protein n=1 Tax=Ca... 111 2e-22 UniRef50_A9B5T9 Helicase superfamily 1 and 2 ATP-binding n=1 Tax... 108 1e-21 UniRef50_A0QRV7 DEAD/DEAH box helicase n=2 Tax=Actinomycetales R... 100 6e-19 UniRef50_Q07PM3 DEAD/DEAH box helicase domain protein n=1 Tax=Rh... 99 8e-19 UniRef50_A1UB29 DEAD/DEAH box helicase domain protein n=2 Tax=My... 97 3e-18 UniRef50_UPI0001AF474B DEAD/DEAH box helicase domain-containing ... 92 1e-16 UniRef50_Q3IPC2 Predicted helicase n=3 Tax=Halobacteriaceae RepI... 90 4e-16 UniRef50_A6G8L6 DEAD/DEAH box helicase domain protein n=1 Tax=Pl... 90 5e-16 UniRef50_Q0B058 Putative helicase n=1 Tax=Syntrophomonas wolfei ... 89 6e-16 UniRef50_B5J454 DEAD/DEAH box helicase domain protein n=1 Tax=Oc... 88 2e-15 UniRef50_Q2JN13 Putative helicase n=1 Tax=Synechococcus sp. JA-2... 86 7e-15 UniRef50_D1WRW1 Serine/threonine protein kinase n=3 Tax=Streptom... 86 8e-15 UniRef50_C8PSY6 Dead/deah box helicase domain protein n=1 Tax=Tr... 84 2e-14 UniRef50_A9CY68 DEAD/DEAH box helicase domain protein n=1 Tax=Ho... 83 4e-14 UniRef50_A9KIX6 DEAD/DEAH box helicase domain protein n=1 Tax=Cl... 81 1e-13 UniRef50_C9RZB7 DEAD/DEAH box helicase domain protein n=2 Tax=Ge... 79 1e-12 UniRef50_D0HYY2 Helicase n=3 Tax=Proteobacteria RepID=D0HYY2_VIBCH 78 2e-12 UniRef50_C8XHE6 Helicase domain protein n=1 Tax=Nakamurella mult... 77 3e-12 UniRef50_D1CII2 DEAD/DEAH box helicase domain protein n=1 Tax=Th... 76 7e-12 UniRef50_C0Q9L0 Dbp n=1 Tax=Desulfobacterium autotrophicum HRM2 ... 76 9e-12 UniRef50_Q92JT3 Putative uncharacterized protein n=1 Tax=Sinorhi... 75 1e-11 UniRef50_UPI00017895CA DEAD/DEAH box helicase domain protein n=1... 74 2e-11 UniRef50_Q2SFN9 Distinct helicase family with a unique C-termina... 71 1e-10 UniRef50_C1XMC1 Helicase family protein with metal-binding cyste... 71 2e-10 UniRef50_B2JBC8 DEAD/DEAH box helicase domain protein n=4 Tax=Cy... 71 2e-10 UniRef50_Q4KCB1 Helicase n=3 Tax=Gammaproteobacteria RepID=Q4KCB... 70 3e-10 UniRef50_B4V8K6 DEAD/DEAH box helicase domain containing protein... 70 4e-10 UniRef50_A8MHW5 DEAD/DEAH box helicase domain protein n=1 Tax=Al... 69 9e-10 UniRef50_C6CEX4 DEAD/DEAH box helicase domain protein n=3 Tax=Ga... 67 3e-09 UniRef50_C3Q570 Helicase n=1 Tax=Bacteroides sp. 9_1_42FAA RepID... 67 4e-09 UniRef50_A6DRF3 Putative helicase n=1 Tax=Lentisphaera araneosa ... 66 5e-09 UniRef50_D0LMZ5 DEAD/DEAH box helicase domain protein n=1 Tax=Ha... 66 7e-09 UniRef50_C6BED1 DEAD/DEAH box helicase domain protein n=2 Tax=Be... 66 7e-09 UniRef50_UPI0001C16AE3 DEAD/DEAH box helicase domain protein n=2... 65 1e-08 UniRef50_Q7NH01 Gll2736 protein n=2 Tax=Cyanobacteria RepID=Q7NH... 65 1e-08 UniRef50_D2QY08 DEAD/DEAH box helicase domain protein n=1 Tax=Pi... 65 1e-08 UniRef50_A4VQ18 Putative helicase n=1 Tax=Pseudomonas stutzeri A... 65 1e-08 UniRef50_A1W4A0 DEAD/DEAH box helicase domain protein n=4 Tax=Pr... 64 2e-08 UniRef50_A9AUS0 DEAD/DEAH box helicase domain protein n=1 Tax=He... 64 2e-08 UniRef50_B2JC69 Helicase superfamily 1 and 2 ATP-binding n=1 Tax... 64 2e-08 UniRef50_A1SC23 DEAD/DEAH box helicase domain protein n=3 Tax=Ac... 64 3e-08 UniRef50_Q1IY46 ATP-dependent RNA helicase, intein and Vcr-like ... 64 3e-08 UniRef50_B9B1G2 Helicase n=1 Tax=Burkholderia multivorans CGD1 R... 62 8e-08 UniRef50_B5PIM9 Helicase n=2 Tax=Salmonella enterica subsp. ente... 62 1e-07 UniRef50_B5J9Y0 Putative uncharacterized protein n=1 Tax=Octadec... 61 2e-07 UniRef50_A1B283 DEAD/DEAH box helicase domain protein n=4 Tax=Al... 61 2e-07 UniRef50_B4S9Y6 DEAD/DEAH box helicase domain protein n=3 Tax=Ba... 61 2e-07 UniRef50_Q0YQW0 Helicase-like:Type III restriction enzyme, res s... 61 3e-07 UniRef50_A5UPV6 DEAD/DEAH box helicase domain protein n=1 Tax=Ro... 61 3e-07 UniRef50_C8W5N0 DEAD/DEAH box helicase domain protein n=2 Tax=Pe... 61 3e-07 UniRef50_B1ITR7 Helicase superfamily 1 and 2 ATP-binding n=17 Ta... 60 4e-07 UniRef50_A8EC51 Probable ATP-dependent helicase Lhr n=2 Tax=pseu... 60 6e-07 UniRef50_C7HAN6 Putative helicase n=1 Tax=Faecalibacterium praus... 58 1e-06 UniRef50_D0XMD3 DEAD/DEAH box helicase domain protein n=1 Tax=Br... 58 2e-06 UniRef50_C7MQ55 Helicase family protein with metal-binding cyste... 58 2e-06 UniRef50_Q89AK2 Transcription-repair-coupling factor n=3 Tax=Gam... 58 2e-06 UniRef50_A9VZE2 DEAD/DEAH box helicase domain protein n=2 Tax=Me... 58 2e-06 UniRef50_A8KF74 Dead/deah box helicase domain protein n=2 Tax=ps... 57 3e-06 UniRef50_UPI000185C0CA conserved hypothetical protein n=1 Tax=Co... 57 3e-06 UniRef50_A3V5V1 Probable ATP-dependent helicase Lhr n=1 Tax=Lokt... 57 4e-06 UniRef50_C9YW00 Putative RNA helicase n=1 Tax=Streptomyces scabi... 57 4e-06 UniRef50_C9ZFT8 Putative RNA helicase n=1 Tax=Streptomyces scabi... 56 6e-06 UniRef50_B6ASD7 RNA helicase n=1 Tax=Leptospirillum sp. Group II... 56 7e-06 UniRef50_B5HBR0 Truncated helicase superfamily 1 and 2 ATP-bindi... 56 9e-06 UniRef50_Q2GBH3 DEAD/DEAH box helicase-like protein n=1 Tax=Novo... 55 1e-05 UniRef50_A3MWQ0 DEAD/DEAH box helicase domain protein n=5 Tax=Th... 55 2e-05 UniRef50_C8VVH8 DEAD/DEAH box helicase domain protein n=1 Tax=De... 54 2e-05 UniRef50_A0L7C1 DEAD/DEAH box helicase domain protein n=1 Tax=Ma... 54 2e-05 UniRef50_C1XVJ6 Helicase family protein with metal-binding cyste... 54 3e-05 UniRef50_C0GNR7 DEAD/DEAH box helicase domain protein n=1 Tax=De... 53 4e-05 UniRef50_Q3IP60 Lhr-like helicase n=5 Tax=Halobacteriaceae RepID... 53 4e-05 UniRef50_C9NK45 DEAD/DEAH box helicase domain protein n=1 Tax=St... 53 4e-05 UniRef50_A4XIS4 Transcription-repair coupling factor n=2 Tax=Clo... 53 5e-05 UniRef50_C5T093 Putative uncharacterized protein n=1 Tax=Acidovo... 52 9e-05 UniRef50_Q4C992 Helicase, C-terminal:DEAD/DEAH box helicase, N-t... 52 1e-04 UniRef50_B1ZZM6 DEAD/H associated domain protein n=1 Tax=Opitutu... 51 1e-04 UniRef50_UPI000050FC02 helicase superfamily protein n=1 Tax=Brev... 51 2e-04 UniRef50_Q6KZS3 ATP-dependent RNA helicase n=4 Tax=Thermoplasmat... 51 2e-04 UniRef50_D2NP15 Transcription-repair coupling factor n=2 Tax=Rot... 51 2e-04 UniRef50_Q0W7D8 ATP-dependent RNA helicase n=3 Tax=Euryarchaeota... 51 2e-04 UniRef50_A6BZ20 Putative RNA helicase n=1 Tax=Planctomyces maris... 51 3e-04 UniRef50_Q5P8U3 Helicase (Putative RNA helicase),fragment n=1 Ta... 51 3e-04 UniRef50_C1XMC2 Helicase family protein with metal-binding cyste... 50 4e-04 UniRef50_A5UZG2 Transcription-repair coupling factor n=2 Tax=Ros... 50 5e-04 UniRef50_Q8TGY8 Lhr-like Superfamily II helicase n=1 Tax=Methano... 50 5e-04 UniRef50_Q12A09 Transcription-repair coupling factor n=2 Tax=Bur... 50 5e-04 UniRef50_Q57742 Uncharacterized ATP-dependent helicase MJ0294 n=... 50 6e-04 UniRef50_D0TGP7 DEAD/DEAH box helicase domain-containing protein... 49 7e-04 UniRef50_C8NS10 Helicase n=4 Tax=Corynebacterium RepID=C8NS10_COREF 49 7e-04 UniRef50_B4D6Q0 DEAD/H associated domain protein n=1 Tax=Chthoni... 49 8e-04 UniRef50_B5WD80 DEAD/DEAH box helicase domain protein n=1 Tax=Bu... 49 0.001 UniRef50_A1U089 DEAD/DEAH box helicase domain protein n=1 Tax=Ma... 49 0.001 UniRef50_A8M876 Helicase superfamily 1 and 2 ATP-binding n=2 Tax... 48 0.001 UniRef50_B5JHN5 Helicase conserved C-terminal domain protein n=1... 48 0.001 UniRef50_A7HNV8 DEAD/DEAH box helicase domain protein n=3 Tax=Th... 48 0.002 UniRef50_C4ZBV9 Transcription-repair coupling factor n=6 Tax=Clo... 48 0.002 UniRef50_Q46BX9 ATP-dependent RNA helicase n=4 Tax=Methanosarcin... 48 0.002 UniRef50_C1ADN7 Putative uncharacterized protein n=1 Tax=Gemmati... 48 0.003 UniRef50_A8TCZ4 DEAD/DEAH box helicase domain protein n=1 Tax=Me... 47 0.003 UniRef50_A4SC91 DEAD/DEAH box helicase domain protein n=1 Tax=Ch... 47 0.003 UniRef50_Q1NPX2 Transcription-repair coupling factor n=3 Tax=del... 47 0.003 UniRef50_D1VSM6 Transcription-repair coupling factor n=1 Tax=Pep... 47 0.004 UniRef50_Q018A3 ATP-dependent RNA helicase (ISS) n=2 Tax=Ostreoc... 47 0.004 UniRef50_C5JYR0 Tyrosyl-DNA phosphodiesterase domain-containing ... 47 0.004 UniRef50_D2RFY4 DEAD/DEAH box helicase domain protein n=1 Tax=Ar... 46 0.004 UniRef50_O29116 Large helicase-related protein (Lhr-1) n=2 Tax=A... 46 0.005 UniRef50_C5A764 ATP-dependent helicase, lhr-like protein (Lhr) n... 46 0.006 UniRef50_A3DIQ2 Transcription-repair coupling factor n=7 Tax=Clo... 46 0.006 UniRef50_D1Y8J9 Transcription-repair-coupling factor n=2 Tax=Syn... 46 0.006 UniRef50_A5KKI8 Putative uncharacterized protein n=4 Tax=Clostri... 46 0.006 UniRef50_C0GU79 Helicase superfamily 1 and 2 ATP-binding n=1 Tax... 46 0.007 UniRef50_B2GL97 Transcription-repair coupling factor n=3 Tax=Act... 46 0.007 UniRef50_UPI0000DB7B84 PREDICTED: similar to Probable ATP-depend... 46 0.008 UniRef50_A7VP19 Putative uncharacterized protein n=1 Tax=Clostri... 45 0.010 UniRef50_UPI000180C217 PREDICTED: similar to DEAD (Asp-Glu-Ala-A... 45 0.011 UniRef50_A9VAJ5 Predicted protein n=1 Tax=Monosiga brevicollis R... 45 0.011 UniRef50_A1RZW9 DEAD/DEAH box helicase domain protein n=1 Tax=Th... 45 0.011 UniRef50_C3Z6D9 Putative uncharacterized protein n=2 Tax=Eumetaz... 45 0.014 UniRef50_A8L3E8 Helicase superfamily 1 and 2 ATP-binding n=1 Tax... 45 0.014 UniRef50_A5UXD6 DEAD/DEAH box helicase domain protein n=2 Tax=Ro... 45 0.015 UniRef50_B8D5X5 DEAD/DEAH box helicase domain protein n=1 Tax=De... 45 0.015 UniRef50_A9WHG9 Transcription-repair coupling factor n=3 Tax=Chl... 45 0.016 UniRef50_UPI0000E4A052 PREDICTED: similar to DEAD/H box 51 RNA h... 44 0.017 UniRef50_B6YWG2 Large helicase-related protein n=1 Tax=Thermococ... 44 0.021 UniRef50_A9KJU0 DEAD/DEAH box helicase domain protein n=3 Tax=Cl... 44 0.024 UniRef50_A8RJ57 Putative uncharacterized protein n=1 Tax=Clostri... 44 0.029 UniRef50_B9LRP7 DEAD/DEAH box helicase domain protein n=7 Tax=Ha... 44 0.034 >UniRef50_P39393 Putative uncharacterized protein yjiV n=34 Tax=Enterobacteriaceae RepID=YJIV_ECOLI Length = 906 Score = 1246 bits (3223), Expect = 0.0, Method: Composition-based stats. Identities = 906/906 (100%), Positives = 906/906 (100%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHD 60 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHD Sbjct: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHD 60 Query: 61 ATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCS 120 ATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCS Sbjct: 61 ATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCS 120 Query: 121 ASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRR 180 ASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRR Sbjct: 121 ASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRR 180 Query: 181 LITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARA 240 LITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARA Sbjct: 181 LITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARA 240 Query: 241 KQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKER 300 KQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKER Sbjct: 241 KQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKER 300 Query: 301 ADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGL 360 ADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGL Sbjct: 301 ADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGL 360 Query: 361 EKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVRNP 420 EKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVRNP Sbjct: 361 EKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVRNP 420 Query: 421 ESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGP 480 ESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGP Sbjct: 421 ESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGP 480 Query: 481 LAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQ 540 LAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQ Sbjct: 481 LAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQ 540 Query: 541 YDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEG 600 YDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEG Sbjct: 541 YDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEG 600 Query: 601 GFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATI 660 GFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATI Sbjct: 601 GFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATI 660 Query: 661 PGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFW 720 PGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFW Sbjct: 661 PGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFW 720 Query: 721 DVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKTKLTDGAEVTLDTL 780 DVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKTKLTDGAEVTLDTL Sbjct: 721 DVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKTKLTDGAEVTLDTL 780 Query: 781 FKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVELTVFDSPRDIPHHRKLTVTFED 840 FKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVELTVFDSPRDIPHHRKLTVTFED Sbjct: 781 FKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVELTVFDSPRDIPHHRKLTVTFED 840 Query: 841 GQVLKIRFDQGMGYWRINFSSQWHYFDFRDDVSFQLVKMAQACKEGNVANSEESWATDVL 900 GQVLKIRFDQGMGYWRINFSSQWHYFDFRDDVSFQLVKMAQACKEGNVANSEESWATDVL Sbjct: 841 GQVLKIRFDQGMGYWRINFSSQWHYFDFRDDVSFQLVKMAQACKEGNVANSEESWATDVL 900 Query: 901 VEVIAS 906 VEVIAS Sbjct: 901 VEVIAS 906 >UniRef50_D0KMA4 DEAD/DEAH box helicase domain protein n=9 Tax=Bacteria RepID=D0KMA4_PECWW Length = 2104 Score = 844 bits (2179), Expect = 0.0, Method: Composition-based stats. Identities = 419/676 (61%), Positives = 518/676 (76%), Gaps = 4/676 (0%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHD 60 +YVNQRQNC CGSPV+E+AFCN+CNEPHLLAR+K+GKLVQWENKGGDEFSLQD++P + + Sbjct: 473 VYVNQRQNCPCGSPVFELAFCNECNEPHLLAREKRGKLVQWENKGGDEFSLQDDIPDDVE 532 Query: 61 ATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCS 120 EKVEKE + P IIAA AGYTLQRLDRQT IGVI+N+SI L INDI+Q+CS Sbjct: 533 PVAEKVEKEIVIKTPHIIAAEHNEAAGYTLQRLDRQTHSIGVIHNNSISLAINDIDQICS 592 Query: 121 ASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRR 180 A C YRG+ G PFRRA+LG PFYVT+IVPTVLEYC DF G +G GP +LPGRGRR Sbjct: 593 ARSCSYRGVKGMSPFRRAILGSPFYVTHIVPTVLEYCPDFLGKNG-KGDGPQTLPGRGRR 651 Query: 181 LITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQT-STAPNANADLEKLAAR 239 LITFTDSRQGTARMAVRMQQEAER+RLRGSVVEILSW+Q+ Q+ A+ D +K Sbjct: 652 LITFTDSRQGTARMAVRMQQEAERNRLRGSVVEILSWYQKQQSAGDVAAADIDPQKFREL 711 Query: 240 AKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKE 299 A +AR++A+EYR GMP +A ++ +A++ EQ + A G K + LVS W EMV EL++ Sbjct: 712 ADKARKEAKEYRDMGMPGEAVEAEEKAQRFEQRLKQALGEKVSVPLVSLGWREMVGELQK 771 Query: 300 RADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQG 359 DI+GP+L+YN Y KPE+F E+ GP+KLSEMLLFREFMRRPKR+NSLETQGLV++GYQG Sbjct: 772 TFDIKGPILRYNRYHKPEIFREHDGPVKLSEMLLFREFMRRPKRSNSLETQGLVKIGYQG 831 Query: 360 LEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVRN 419 LEK P HWQEKGL+L DW+DFLK++LD YVRE+++ QL+D+ + WIGSRF+ + +R+ Sbjct: 832 LEKAQIVPDHWQEKGLSLQDWQDFLKISLDFYVRENSYIQLEDDWRQWIGSRFAPRSLRS 891 Query: 420 PESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTG 479 PES + ++ Q +RWPQIR+G +S RL KLL+LGAG A ID++N WLK AW L+G Sbjct: 892 PESDEHDEYQVKRWPQIRHGIMSQRLIKLLLLGAGLNVKRTADIDVVNNWLKAAWKALSG 951 Query: 480 PLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLA 539 L VL+ DGNRFYLP+EHMTFSL+T A+ICP TNK LDTAFKGLTPYLPTHI FE+L+ A Sbjct: 952 NLGVLRSDGNRFYLPREHMTFSLVTKAYICPATNKFLDTAFKGLTPYLPTHIDFENLSDA 1011 Query: 540 QYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVE 599 Q ++ A+ +PE+W DRSQ DYA G++K R +S DP++ QLR +N+WTDINDR +E Sbjct: 1012 QRLSYSAEPAMLPEVWHFDRSQNDYANGISKVRLQISEDPIVQQLRLQNLWTDINDRAIE 1071 Query: 600 GGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQAT 659 GGFYYRTAEHSAQQS+ERL+ YE MFK G +NVLNCSTTMEMGVD + + + Sbjct: 1072 GGFYYRTAEHSAQQSAERLEEYETMFKEGSINVLNCSTTMEMGVDIGGISAVVMNNVPPH 1131 Query: 660 IPGPEWHLNDELVVRS 675 + RS Sbjct: 1132 P--ANYLQRAGRAGRS 1145 Score = 311 bits (795), Expect = 1e-82, Method: Composition-based stats. Identities = 129/257 (50%), Positives = 174/257 (67%), Gaps = 2/257 (0%) Query: 647 RVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHK 706 V+TLA+R A IP +WH LVVRS + V+L L + A ERVKDI + Sbjct: 1847 SVITLATRDTLAAIPDSDWHQTQALVVRSQTFALVDLEAVDLACWSEPAGERVKDIPLST 1906 Query: 707 QLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLK 766 +LNGP++QFG+RFW L +EE +L+ N +IT V+YTDRY+QNP AL LLGSI+ LK Sbjct: 1907 ELNGPIAQFGRRFWAELEKANEETGALLKNNQITRVYYTDRYIQNPAALVLLGSIMNQLK 1966 Query: 767 TKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVELTVFDSPR 826 +L+ +V ++TLFK K++PG + HDW + DFQ FA+ WF + +PV++T+ S R Sbjct: 1967 PRLSVHTQVAINTLFKTKEKPGFKAAHDWANKDDFQGFAEHWFTTLMDKPVDVTLNYSKR 2026 Query: 827 DIPHHRKLTVTFEDGQVLKIRFDQGMGYWRINFSSQWHYFDFRDDVSFQLVKMAQACKEG 886 DIPHHRKL V F++G+ LKIRFDQGMGYW I FS ++FRDDV QL MA++ ++ Sbjct: 2027 DIPHHRKLLVEFDNGKALKIRFDQGMGYWSIQFSPDS--YNFRDDVEDQLYNMARSLEQA 2084 Query: 887 NVANSEESWATDVLVEV 903 V+N E+ W TDVLVE+ Sbjct: 2085 WVSNKEDRWPTDVLVEI 2101 >UniRef50_B7VNH2 Putative uncharacterized protein n=1 Tax=Vibrio splendidus LGP32 RepID=B7VNH2_VIBSL Length = 2085 Score = 729 bits (1881), Expect = 0.0, Method: Composition-based stats. Identities = 307/678 (45%), Positives = 414/678 (61%), Gaps = 35/678 (5%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHD 60 +Y QRQ CDCG+PV E++FC DCNEPHL+ DKKGKL+QW GDEFSLQ E + D Sbjct: 477 VYAVQRQTCDCGAPVLELSFCLDCNEPHLMGLDKKGKLLQWNGGAGDEFSLQQERLDDDD 536 Query: 61 ATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCS 120 ++++ + P + A + Y + + IG + ++ +Q C Sbjct: 537 QDVQQLDDTARY--PEMFGAKQDDHEHYAAINIGKDGI-IGSVKPGYELMMDTAKKQTC- 592 Query: 121 ASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRR 180 C + G + PFRRA+LG PFY+ N+VPT+LE+C D +D + GP SLP RGRR Sbjct: 593 -CSCNFEGYNHGSPFRRAMLGAPFYIANVVPTLLEFCPDIVADGPE---GPQSLPARGRR 648 Query: 181 LITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQ--RTQTSTAPNANADLEKLAA 238 LITFTDSRQGTAR++VRMQQEAERS+LRG+VVE+L Q + Q P+ + L A Sbjct: 649 LITFTDSRQGTARLSVRMQQEAERSKLRGAVVEVLRDKQLSQPQNDDKPSEGVSAQDLLA 708 Query: 239 RAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELK 298 +AK E R+ GM A++ +AQA +E G A L +W +MV EL Sbjct: 709 KAK-------ELRAMGMNGPAEMLEAQASAIES-------GGAELTLAKLSWNDMVTELA 754 Query: 299 ERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQ 358 +++D+ G +LQYN YL PE+F + G KL++MLLFREF RRPKR NS ETQG+V+V Y Sbjct: 755 KKSDLNGAMLQYNQYLSPEIFKQFDGSAKLADMLLFREFARRPKRQNSSETQGMVKVSYA 814 Query: 359 GLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDE-LKNWIGSRFSSKFV 417 GL+KI P W+E G LDDW DF+KV+LD Y+RE+NF +L+D W+GSRF+SK + Sbjct: 815 GLDKIKSCPDRWEEYGYKLDDWLDFIKVSLDFYIRENNFLRLEDAGWLKWVGSRFASKSL 874 Query: 418 RNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQL 477 RNP+S++ + + ++WPQIR+GN +RL KLL + + DIIN WL AW +L Sbjct: 875 RNPDSEEANEGRVKKWPQIRSGN-HNRLVKLLAATSSIDADSTVGNDIINGWLASAWHEL 933 Query: 478 TGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLT 537 T +L PD NRF L + +TFS + IC VTNK++DT F+G++PYLP + Sbjct: 934 TVNTRILSPDNNRFALDRNKITFSFVDKVHICKVTNKLIDTTFRGISPYLPRKVE----- 988 Query: 538 LAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRV 597 + +V P IW+++ +Q DY +GL R+ V D + LR N+WTDINDR Sbjct: 989 --DISQYKCVEVDFPCIWQVEATQHDYQKGLKHIREIVGKDSKVEYLREHNLWTDINDRA 1046 Query: 598 VEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQ 657 VEGG YYRTAEHSAQQSS+RL YE +FK G++NVLNCSTTMEMGVD + + + Sbjct: 1047 VEGGLYYRTAEHSAQQSSDRLNEYEDLFKKGKINVLNCSTTMEMGVDIGGISAVVMNNVP 1106 Query: 658 ATIPGPEWHLNDELVVRS 675 + RS Sbjct: 1107 PHP--ANYLQRAGRAGRS 1122 Score = 289 bits (738), Expect = 5e-76, Method: Composition-based stats. Identities = 77/264 (29%), Positives = 133/264 (50%), Gaps = 6/264 (2%) Query: 644 DTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQ 703 D ++V T+A+ Q TIPG W + + + + F+L ++ I+ Sbjct: 1822 DGNKVSTIANTVAQNTIPGKLWLQQGGISICCESTQLHPQSPFVLSISKKGEAPQIASIE 1881 Query: 704 IHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILR 763 + +LNG LS+FG+ FW +F + L+ + I+ V Y+DRY+Q+P ++ ++ +L Sbjct: 1882 LVDELNGSLSKFGKAFWITMFKTNPNLAELLKSESISEVEYSDRYIQSPSSMLMICELLG 1941 Query: 764 PLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVELTVFD 823 + VT++TL+ +K G+ HDW +F + + W LG + + Sbjct: 1942 YICRGFDSIRTVTINTLYHEKQTVGHYLHHDWQDKGEFIEAYEVWGELKLGVKPSVKCHE 2001 Query: 824 SPRDIPHHRKLTVTFEDGQVLKIRFDQGMGYWRINFSSQWH---YFDFRDDVSFQLVKMA 880 I H R LT+ E G+ L +FDQG+GYWRI+ ++ + F D+ QL + Sbjct: 2002 KRSSIAHRRLLTLKLESGRELVFKFDQGVGYWRISDTTSRFDKVKYSFHSDLDPQLRDLR 2061 Query: 881 QACKEGN-VANSEESWATDVLVEV 903 KE N V ++ ESW+TDV +++ Sbjct: 2062 --SKEPNLVVSNSESWSTDVTLQI 2083 >UniRef50_B5WD63 DEAD/DEAH box helicase domain protein n=1 Tax=Burkholderia sp. H160 RepID=B5WD63_9BURK Length = 2083 Score = 718 bits (1852), Expect = 0.0, Method: Composition-based stats. Identities = 301/814 (36%), Positives = 410/814 (50%), Gaps = 71/814 (8%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHD 60 +YV QR C+C +PVYE+AFC++C PHLLA D+ G+L Q DEFSL + P E + Sbjct: 469 VYVTQRSRCECHAPVYELAFCDECKTPHLLAEDRAGQLQQRSPYASDEFSLSYDSPAEDE 528 Query: 61 ATEE--KVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQV 118 + F +IAA ET Y +++ T +G + + ++ E + Sbjct: 529 PNGDLPSSLSRRQFAEKFVIAASETQREPYFPLQVNLSTLNVGALPSTDTRELVVAPESL 588 Query: 119 CSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRG 178 + S C P R+A LG PFYV N VPTVLE+C D E +G P+ LPGRG Sbjct: 589 ATCSRCETSFTGSPGPLRKAYLGAPFYVANAVPTVLEFCPD-PMPEDSDGKSPEELPGRG 647 Query: 179 RRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAA 238 R+LITFTDSRQGTARMAVRMQQEAERSRLRG V EIL Q + + Sbjct: 648 RKLITFTDSRQGTARMAVRMQQEAERSRLRGLVFEILRNAQAKLDAKPKDIPT------V 701 Query: 239 RAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELK 298 ++ EQA+ +S GM D + QL Q + A G + + +W++MV EL Sbjct: 702 GYEELIEQAKRLQSMGMNDMS-------AQLFQKAEEARSGLSTSGTSEMSWSDMVTELA 754 Query: 299 ERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQ 358 DI + YN Y PE+F G + ++ +LL RE+ RRPK NS ET GLV+VGY+ Sbjct: 755 TSRDISLSIRDYNKYANPELFEGQEGAIPMARLLLAREYARRPKNQNSTETLGLVRVGYR 814 Query: 359 GLEKIHKSPLHWQEK------------GLTLDDWRDFLKVTLDHYVRESNFTQLDDELKN 406 GL+ I +P W + LTL DWRDFLKV LD +VRE+ F +LD ++ Sbjct: 815 GLDGITSAPALWLGRKAGALPGEAVPGNLTLQDWRDFLKVALDFHVRENTFIRLDPTMQR 874 Query: 407 WIGSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDII 466 W+G+RF+SK + + E ++WPQ R G HRL KLL G DII Sbjct: 875 WMGARFTSKVLMPSKRDAAESATFKKWPQFRQG-RGHRLVKLLEQGCNLDRSRPDDQDII 933 Query: 467 NTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPY 526 N L+ AW L G +L+ + L +TFSL T AW+CP+T+++ DTAF+ LTPY Sbjct: 934 NHLLEHAWNALVGAT-ILEQFEGGYALNLNTLTFSLPTIAWVCPLTHRMFDTAFRALTPY 992 Query: 527 LPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRS 586 +P + + +KV +P + L D + R V+ +P + QLRS Sbjct: 993 MPDRF--------REGDYRCRKVQLPT-FSLLSPAGDADAARVQVRRLVTDNPQVQQLRS 1043 Query: 587 ENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTD 646 +N+WTDI DR EGGFYYRTAEHSAQQSS RL++YE MFK G++NVLNCSTTMEMGVD Sbjct: 1044 QNLWTDICDRTAEGGFYYRTAEHSAQQSSSRLETYEDMFKRGKINVLNCSTTMEMGVDIG 1103 Query: 647 RVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHK 706 + + + + R +++ A K Sbjct: 1104 GISAVLMNNVPPHP--ANYLQRAGRAGRRNEARSIAYTLCKADPHNQRAFREPK------ 1155 Query: 707 QLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLK 766 W + +++ RI R++ + ALLG LR L Sbjct: 1156 -------------WPFVT-AIPAPGITLSSERIVQ-----RHVNS----ALLGRFLRTLG 1192 Query: 767 TKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIAD 800 TD ++TL+ F + F DWM Sbjct: 1193 NTGTDRTKLTLNWFFG-GEASTCTRFIDWMQSDP 1225 Score = 233 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 69/260 (26%), Positives = 113/260 (43%), Gaps = 9/260 (3%) Query: 649 MTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDI-QIHKQ 707 TL + +PG W + V + L + A A E + ++ + Sbjct: 1829 QTLLTSEAATGVPGENWLRTHDTSVWVSTGQLKSLRVTPIDVAAWEARESGATVLEVVTE 1888 Query: 708 LNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKT 767 LNGP+S R ++ SLM + T V Y+DRYL++P +L LLG L K+ Sbjct: 1889 LNGPVSSLAARLRGLISERVPALASLMAHDHATEVSYSDRYLKSPWSLMLLGGFLSIFKS 1948 Query: 768 KLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVELTVFDSPRD 827 E+ TL + N HDW D + W + ++T+ + P D Sbjct: 1949 SELRRLEIA--TLRPQATQVSNHLKHDWNRPEDMRKLICAWLQTMVSVEPQVTMVEKPYD 2006 Query: 828 IPHHRKLTVTFEDGQVLKIRFDQGMGYW--RINFSSQWHYFDFRDDVSFQLVKMAQACKE 885 + H R + V++ G+ K+ DQG+GYW + + Q H FDF + + Q +M + K Sbjct: 2007 LQHSRVIYVSWASGRKTKLILDQGVGYWQPKTVYRDQAH-FDFNESLEAQGSRMVEQYKF 2065 Query: 886 GNVANSEESWATDVLVEVIA 905 N+ N +W T + V++ Sbjct: 2066 ANMVN-GGTWPT--FLSVVS 2082 >UniRef50_A1K7X0 Putative helicase related protein n=3 Tax=Proteobacteria RepID=A1K7X0_AZOSB Length = 2109 Score = 658 bits (1696), Expect = 0.0, Method: Composition-based stats. Identities = 246/704 (34%), Positives = 359/704 (50%), Gaps = 59/704 (8%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLA------RDKKGKLVQWENKGGDEFSLQDE 54 +Y R++C+CGSPVYE+ CN+CN +L A D K +L+Q + DEFSL E Sbjct: 473 VYTEPRKHCECGSPVYELRSCNECNTTYLWARRYGPGEDGKYRLLQTTEEDFDEFSLDTE 532 Query: 55 VPVEHDATEEKVEKENSFQPPLIIAAGETSEAGYT---------LQRLDRQTRRIGVINN 105 + E++ + + P LI A + + LD R G + Sbjct: 533 R---AEEDEQQAQVRPGYSPVLIANAHKGATEEILVDAATLALDPLELDGAVRLRG--RD 587 Query: 106 DSIPLIINDIEQVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEG 165 +S+ + VC G + +G FR+A+LG PF + IVPT+LE+C D + E Sbjct: 588 ESVIDDQGTLAMVCPECG-AHDPSNGLGLFRKAILGAPFLLGEIVPTLLEFCPDIDNSEA 646 Query: 166 KEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTST 225 K P P RGRR+I+FTDSRQGTAR+A R+QQ++ER+R+RG V + TS Sbjct: 647 K----PLERPYRGRRMISFTDSRQGTARIAARLQQDSERNRIRGLVF------TKVLTSG 696 Query: 226 APNANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATIL 285 +P AD+ +L Q + +A G P+ Q + L +G + Sbjct: 697 SPGGEADVAQL-----QGQVEALGAVLAGGPNPQ--IQVIYDSLRAKLLEFSGFRP---- 745 Query: 286 VSRTWTEMVNELKER-ADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRT 344 + EMV L +D+R + Y P F N G +L+ +LL REF RRPKR Sbjct: 746 --VPFAEMVQWLSSAVSDVRDWMYGYYRDQDPGEFGTNNGRERLARILLTREFGRRPKRV 803 Query: 345 NSLETQGLVQVGYQGLEKIHKSPLHWQE-KGLTLDDWRDFLKVTLDHYVRESNFTQLDDE 403 NSLET GLV+ Y LE I++ P E ++L DW+DFLK+ LD ++RE+ F L D Sbjct: 804 NSLETMGLVRTVYPKLEAINRLPDFVGEVPAISLSDWKDFLKIALDFHIRENTFIDLPDA 863 Query: 404 LKNWIGSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATI 463 + W G+R S+K + PE++ + N+ +RWPQ RL ++L G +A+ Sbjct: 864 WRKWGGNRLSAKQLMPPETQQAQTNRYKRWPQCAVIERQSRLVRILARGLNIDPQSASGR 923 Query: 464 DIINTWLKEAWAQLTGPLAVLKPDGNRFYLPK---EHMTFSLITDAWICPVTNKILDTAF 520 + I+ L+ AW QL L +L+ YL E M + I +AW+CPVT ++LDTAF Sbjct: 924 NAIDAILRGAWKQLLD-LKLLEMGDVGRYLKLDGAEIMALAPIENAWLCPVTRRVLDTAF 982 Query: 521 KGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPL 580 G+TPYLP + + + MP+ + E E + RDW++ D Sbjct: 983 MGITPYLPEQAKSDSVA-------KCVPLKMPDYSPIANLDEIGDERVELVRDWLNTDDA 1035 Query: 581 IAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTME 640 + LR + +W+D+NDRVVEG FY+R AEHSAQQ RL YE FK G++N+L+CSTTME Sbjct: 1036 VTALRKDGLWSDLNDRVVEGAFYFRAAEHSAQQPGARLAEYEAAFKTGRINLLSCSTTME 1095 Query: 641 MGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELN 684 MGVD + +A + + R ++V L+ Sbjct: 1096 MGVDIGGISVVAMNNVPPHP--ANYLQRAGRAGRRSETRSVALS 1137 Score = 208 bits (529), Expect = 7e-52, Method: Composition-based stats. Identities = 68/271 (25%), Positives = 111/271 (40%), Gaps = 24/271 (8%) Query: 646 DRVMTLASRSQQATIPGPEWH-LNDELVVRSLGYKTVELNE---FILPAKATNAVERVKD 701 RV+ A +A +PG W + ++VR K V L E F L A + V+ Sbjct: 1845 GRVLAWAGLQGRA-VPGANWGDCDGTILVRGAVIKPVALGERLEFALSAPEGLPAQTVR- 1902 Query: 702 IQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSI 761 I+I +L+G FG+R + F H ++ RI + Y DRYL P+ +ALL Sbjct: 1903 IEISNELDGMADGFGRRMLES-FQGHLGISLVLPGERIVELTYHDRYLNAPLPVALLLEF 1961 Query: 762 LRPLKTKLTDG---AEVTLDTLFKDKDRPGNRP----FHDWMSIADFQDFADQWFAAALG 814 + L+ + +V L +P P + +W S + F A G Sbjct: 1962 VCALRASADESWDVKQVALSVAPVPDAQPSRMPPSKVWQNWSSDEERDKALVAAFEYA-G 2020 Query: 815 RPVELTVFDSPRDIPHHRKLTVTFEDGQVLKIRFDQGMGYWRI----NFSSQWHYFDFRD 870 + L + RD H R+L + F G+ L++ FDQG YW++ + +F F Sbjct: 2021 LDLSLATL-TKRDSIHARRLDIVFASGKKLQVWFDQGFSYWQVPRDRTIGTGRVWFPFAG 2079 Query: 871 DVSFQLVKMAQACKEGNVANSEESWATDVLV 901 D+ Q + + + + T V + Sbjct: 2080 DLERQAESIGR----AEFRIEGQPYPTYVFL 2106 >UniRef50_Q5WTN0 Putative uncharacterized protein n=1 Tax=Legionella pneumophila str. Lens RepID=Q5WTN0_LEGPL Length = 2106 Score = 628 bits (1618), Expect = e-178, Method: Composition-based stats. Identities = 221/703 (31%), Positives = 345/703 (49%), Gaps = 63/703 (8%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLARDKKGKLVQWEN-KGGDEFSLQ---DEVP 56 +Y R++C CGSP+YE+ C+DC PHL+A + +LV N K DEF L +E Sbjct: 481 IYFEMRKHCRCGSPIYELVACDDCGTPHLIAAQRGDQLVPPINIKVIDEFELDIDANEEE 540 Query: 57 VEHDATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPL---IIN 113 + D T ++ N + ++I + G + +D+QTR++ + + L ++ Sbjct: 541 LNQDDTNVVNDRYNDAESSVLIVNRNIN--GVIEEVIDKQTRQLIEPTSGNEHLRLRVLG 598 Query: 114 DIEQ--VCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGP 171 D +C G G ++ F+ A +G PF + I+P++LE+ D G P Sbjct: 599 DSGSGLICPCCQGGSHGNRHRKLFQEARIGAPFSLGIILPSLLEFAPD--------GDDP 650 Query: 172 DSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANA 231 P RGRRL+TF DSRQGTAR+A ++QQE+ER R+RG V + Q+ Sbjct: 651 AEHPYRGRRLLTFNDSRQGTARIAAKLQQESERDRIRGLVYHLALRDGLMQSDFE----- 705 Query: 232 DLEKLAARAKQAREQAEEYRSWGMPDQAK-LSQAQAEQLEQAYQAATGGKAATILVSRTW 290 AKQ +++ +E + + + + + + + Q A+ K I ++ Sbjct: 706 --------AKQLKDEIQELENIREHVKEEGKTHIENLLVNRKKQLASLSKPKPI----SF 753 Query: 291 TEMVNEL-KERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLET 349 EM +L + +D + Y + + E F G L L+ M L REF RRPKR N+LE+ Sbjct: 754 EEMSQKLTNQSSDFERMLSHYRNDISYENFKGPEGSLSLARMFLIREFGRRPKRLNNLES 813 Query: 350 QGLVQVGYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIG 409 GLV V Y L I ++ +G L DW FLK+ LD +VR ++ +++K+W+G Sbjct: 814 MGLVSVQYPALNNITRA-----HEGFNLIDWISFLKIALDFFVRAGGSLEIPEKIKSWLG 868 Query: 410 SRFSSKFVRNPESKDPEDNQNRRWPQ----IRNGN----VSHRLAKLLMLGAGFKTVNAA 461 F + + + D + +RRWP+ + NGN L ++L + Sbjct: 869 MPFPQTRLVDQDRVDK-EKTDRRWPRAYYTLPNGNKRLNYQSTLVRILACALKVDIETSL 927 Query: 462 TIDIINTWLKEAWAQLTGPLAVLKPD-GNRFYLPKEHMTFSLITDAWICPVTNKILDTAF 520 D ++ L AW LT +L + G R LP + F+ IT+AWICP+T + LDT Sbjct: 928 GADKVDAALTSAWRALTEGSGILYSNSGGRRVLPLSQIAFTPITNAWICPLTRRFLDTTI 987 Query: 521 KGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPL 580 + +TPYLP H + E T QK+ +P + + +ARDW+S Sbjct: 988 QDITPYLPLHYTNE--------TVKCQKIEIPLYDQPFGGDASDLAQVIRARDWLSKQES 1039 Query: 581 IAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTME 640 I Q + E +W +NDR +E Y+ TAEHSAQQ + RL YEK FK+G LN+L+CSTTME Sbjct: 1040 IIQFKEEGLWPVLNDRAIELSPYFVTAEHSAQQPAYRLDRYEKAFKSGDLNLLSCSTTME 1099 Query: 641 MGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVEL 683 MG+D + T+A + + R +++ L Sbjct: 1100 MGIDIGGIATVAMNNVPPHP--ANYLQRAGRAGRRQEARSISL 1140 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 69/254 (27%), Positives = 121/254 (47%), Gaps = 18/254 (7%) Query: 662 GPEWHLNDELVVRSLGYKTVELN-EFILPAKATNAVERVKDIQI--HKQLNGPLSQFGQR 718 G W D ++ + + L E +L + + + DI+I K L+G L FGQR Sbjct: 1856 GLLWGNTDGPLIVGNKLEPLNLKLESLLVEQLRLSDSTLGDIEIEILKDLDGSLQGFGQR 1915 Query: 719 FWDVLFNDHEEAQSLMNNTR--ITGVHYTDRYLQNPVALALLGSILRPLKTKLTDGA--- 773 FW ++ + SL +NT I + Y DRYL +P+ +ALL ++ ++T + Sbjct: 1916 FWKLVSSSSPNVASLFSNTSLDIEAISYHDRYLFSPLPVALLLELITGIRTLVGTSRWNN 1975 Query: 774 ---EVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVELTVFDSPRDIPH 830 E+T + + ++ + +W+ + + ++ A LG ++ + D + + H Sbjct: 1976 PFIEITTNNESANLNKRSCFIWDNWLDL-EARNGAIINSLDYLGIEGKIKLLDKNKSL-H 2033 Query: 831 HRKLTVTFEDGQVLKIRFDQGMGYWRINFSSQWHYFDFRD-DVSFQLVKMAQACKEGNVA 889 R L V F VL +R DQG+ YW+ N S+ F+F D D+S Q +++A E NV Sbjct: 2034 GRMLEVKFSSNYVLTVRLDQGVSYWKANNYSKQKIFNFGDPDLSNQGIQLA----ELNVD 2089 Query: 890 NSEESWATDVLVEV 903 + T V ++V Sbjct: 2090 IESNYFPTHVFIKV 2103 >UniRef50_B1ITS0 Helicase superfamily 1 and 2 ATP-binding n=14 Tax=Escherichia coli RepID=B1ITS0_ECOLC Length = 2104 Score = 598 bits (1541), Expect = e-169, Method: Composition-based stats. Identities = 199/716 (27%), Positives = 325/716 (45%), Gaps = 82/716 (11%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLA-RDKKGKLVQW-----ENKGGDEFSLQDE 54 ++ QRQ CDCG+PV+EV C+ C +L A + +G W DEF+L + Sbjct: 459 VWFEQRQYCDCGAPVFEVLRCSGCGSAYLSAKEEMRGDGTNWLVAQPAAAEVDEFALDVD 518 Query: 55 VPVEHDATEEKVEKENSFQPPLIIAAGET---SEAGYTLQRLDRQTRR---IGVINNDSI 108 V E + ++++ + F LI + GE S T ++D + ++ I ++ +S Sbjct: 519 VYSEDE-DNDELDNNSQFDR-LIASDGEKYIISLEETTAGKIDSEAQKHYEINLLRPESR 576 Query: 109 PLIINDIEQVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEG 168 N+ + CG FR LG PF++ I+PT+LE+ + E + G Sbjct: 577 GEGRNN---SFACVCCGDSQRKNNPLFRPLRLGAPFFLNEIIPTLLEFSPLPQTREEQLG 633 Query: 169 VGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPN 228 P GRRL+TFTDSRQGTAR++ R+QQ+A+++ LR + L+ +P Sbjct: 634 ------PFNGRRLLTFTDSRQGTARISARLQQDADKATLRALCYQELANINEPSAKLSPA 687 Query: 229 ANADLEKLAAR------------AKQAREQAEEYRSWGM-------PDQAKLSQAQAEQL 269 A LE A+ K+A EE + P + LS AE + Sbjct: 688 HCALLESFIAQFSILPLKNSIDALKKAMVANEELSPADIQALKIIEPMVSSLSPDHAEAM 747 Query: 270 EQAYQAATGGKAATILVSRTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGG----P 325 Q QA +G + + +W + +L D+ + F E G Sbjct: 748 -QILQANSGNQQKKTM---SWQTLSEQLVGSVDLADRMR--------GSFKELSGLDLTK 795 Query: 326 LKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGLEKIHKSPLHWQ----EKGLTLDDWR 381 + ++ L+ EF RRPK +LE+ GLV + Y ++K+ P W+ + L +WR Sbjct: 796 QQFADFCLYSEFGRRPKNAWTLESLGLVAIHYPFIDKVTTCPQDWKTLLPDPDKQLAEWR 855 Query: 382 DFLKVTLDHYVRESNFTQLDDE-LKNWIGSRFSSKFVRNPESKDPEDNQNRRWPQIRNGN 440 + LK+TLD ++RE++ ++E W+G+RF K ++ P+ K+ +++ WPQIR+ + Sbjct: 856 NLLKITLDFFIRENSAVFYENEQYPRWMGARFPVKMLQGPDKKNKGQKRDQLWPQIRDRH 915 Query: 441 VSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLP-KEHMT 499 + + L+ + + A ++N + E W + L + + L K+ Sbjct: 916 YNRVIKLLIAVFPAIQPEQAHWKSLVNHLMIEVWDAIRPCLRQFES---GYQLDIKQQAE 972 Query: 500 FSLITDAWICPVTNKILDTAFKGLTPYLPTH--ISFEHLTLAQYDTFVAQKVTMPEIWKL 557 F W CP T + LD G +PYLP I+ E L + MPE+ Sbjct: 973 FYSPKQVWRCPYTRRALDVTLLGYSPYLPGSKEIAPEKAVL----------IEMPELPVR 1022 Query: 558 D-RSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSE 616 R + +W+ + LI R E +W+ +DR+ +YR EHSAQ++ E Sbjct: 1023 HWRLSGGGEIAREERLEWLESNALIQHAREEGLWSTRSDRLALKDSWYRLEEHSAQRTPE 1082 Query: 617 RLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELV 672 + Q EK FK+G++NVLNCSTTMEMGVD + +A + + Sbjct: 1083 QNQFNEKQFKSGKVNVLNCSTTMEMGVDIGGMSLVAMNNVPPAP--ANYLQRAGRA 1136 Score = 198 bits (504), Expect = 6e-49, Method: Composition-based stats. Identities = 70/244 (28%), Positives = 108/244 (44%), Gaps = 23/244 (9%) Query: 652 ASRSQQATIPGPEWHLNDELVVR------SLGYKTVELN-EFILPAKATNAVERVKDIQI 704 A+ PG W + V + L+ E +LPA T AV I + Sbjct: 1849 AADDSATVAPGELWGQSASSPVVTLKGTSGKTFSGQTLSAEDLLPALPTGAVR----INL 1904 Query: 705 HKQLNGPLSQFGQRFWDVLFNDHE-EAQSLMNNTRITGVHYTDRYLQNPVALALLGSILR 763 +QL+GPL FG RFW ++ H Q+ + IT V Y+DRYL +P +LG IL Sbjct: 1905 CEQLDGPLEGFGSRFWSLVTQQHAGWKQAFTRHKEITHVEYSDRYLNSPFTARMLGEILT 1964 Query: 764 PL-KTKLTDGAEVTLDTLFKDKD-RPGNRPFHDWMSIADFQDF-----ADQWFAAALGRP 816 L + + + A +T+ D + R N ++ W++ D Q + + A Sbjct: 1965 ELVEQGMAERASLTVCVKKLDYNSRQHNALYNAWLNEEDRQQVVTTLLEEGYLGPAWPGA 2024 Query: 817 VELTVFDSPRDIPHHRKLTVTFEDGQVLKIRFDQGMGYWRINFSSQWHYFDFRDDVSFQL 876 + D+ + H R+LTVTF DG + D G+ YWR + +FDF V Q+ Sbjct: 2025 ISWLTGDN-QSTEHGRELTVTFSDGSQHYVLLDMGLSYWRCIEDT---FFDFALRVPQQV 2080 Query: 877 VKMA 880 ++A Sbjct: 2081 ERLA 2084 >UniRef50_C3MEZ4 ATP-dependent helicase n=1 Tax=Rhizobium sp. NGR234 RepID=C3MEZ4_RHISN Length = 2042 Score = 596 bits (1535), Expect = e-168, Method: Composition-based stats. Identities = 197/678 (29%), Positives = 314/678 (46%), Gaps = 61/678 (8%) Query: 1 MYVNQRQNCD-CGSPVYEVAFCNDCNEPHLLARDKKGKL-VQWENKG--GDEFSLQDEVP 56 ++ ++ +NCD CG+PV E+ C +C EP L A + + ++ +G DEF + E Sbjct: 450 LFPSKFENCDTCGAPVVELISCTECGEPMLEAEEDRSDGKLRPSRRGLERDEFQYEAERD 509 Query: 57 VEHDATEEKVEKENSFQPPL---------IIAAGETSEAGYTLQRLDRQTRRIGVINNDS 107 E DA ++ + E L I+ A S++ + + + DS Sbjct: 510 GELDAEGDEDDDEEDGDASLAHKYMAKQTILFAATPSKSSRLISLSTKDWSVLAGPTTDS 569 Query: 108 IPLIINDI---EQVCSASGCGYRGMSGKQ-PFRRALLGGPFYVTNIVPTVLEYCQDFTSD 163 + L + E VC CG + G R G PF VT P +LE + Sbjct: 570 VNLRYEEKSVAEGVCPC--CGVNALRGIDNLLRPVRFGAPFMVTAAAPILLEAVDPKPNS 627 Query: 164 EGKEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQT 223 E +LP GR LI+FTDSRQGTARM+ + Q E+ER+ +R + + Sbjct: 628 E-------RTLPSSGRGLISFTDSRQGTARMSAKFQAESERNFVRSFIYHAVQ------- 673 Query: 224 STAPNANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAAT 283 A A+ D ++ A + Q E P + Q EQL + + Sbjct: 674 -GALAADEDTPEV-ANVRTVIAQIEPLVGTN-PGLQLVLDGQREQLAKLTSES------- 723 Query: 284 ILVSRTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKR 343 ++ W +++ L R ++ + + P+ F G KL+E LL RE RRP+R Sbjct: 724 -VIGVNWNALIDRLARRPEVEFWMKEVWEPRDPDRF---GDAHKLAEFLLLRELFRRPRR 779 Query: 344 TNSLETQGLVQVGYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDE 403 NSLET L + + +E+I P + +G T++DWR FL ++H++R + +D Sbjct: 780 ANSLETLALACLKFPSVERIASMPPAFTRRGKTINDWRYFLTAIINHFIRAKSAVDVDRR 839 Query: 404 LKNWIGSRFSSKFVRNPESKDPEDNQNRRWPQI-RNGNVSHRLAKLLMLGAGFKTVNAAT 462 WI + + + P D + WP++ RN + LL++G + + Sbjct: 840 TMRWIAPQIKLRPLLGPGRSSGGDKRYVIWPKVPRNLSSLSTPQTLLIMGLKLDIADPSD 899 Query: 463 IDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKG 522 D + L+ AW QL VL D + L + +TD + CP+T K ++ A G Sbjct: 900 RDDMQDCLQMAWDQLQQ---VLNADRDNPALDFSKSVVAPVTDGFRCPITRKAIEIAPFG 956 Query: 523 LTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIA 582 LTPY+ + + + A + MPEI + +D A +K DW++ D +A Sbjct: 957 LTPYVRINSAVSN----------ATPLRMPEIPFQLIAPDDPASAKSKISDWLNTDGRVA 1006 Query: 583 QLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMG 642 L+ +W +I++R+ Y R+AEHSAQQ S+RL+ YE FK+G++N+LNCSTTMEMG Sbjct: 1007 DLKKAGIWINISERIALFVDYARSAEHSAQQESQRLRQYETDFKDGRINILNCSTTMEMG 1066 Query: 643 VDTDRVMTLASRSQQATI 660 VD V T+ + +I Sbjct: 1067 VDIGSVSTVMMTNVPPSI 1084 Score = 139 bits (349), Expect = 6e-31, Method: Composition-based stats. Identities = 49/257 (19%), Positives = 86/257 (33%), Gaps = 10/257 (3%) Query: 646 DRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIH 705 M A+ S + PG W E + + I P++ K + I Sbjct: 1794 GHTMAWATHSASSRYPGIAWGQPAEGSIFRGTIQDTASTNPISPSELLPQ-STAKVLLIE 1852 Query: 706 KQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPL 765 K L+ +S FG ++ + + I+ + Y D Y+++P+ LL L Sbjct: 1853 KNLDRSMSLFGTGMAGLIRTNLANL-GFEADAAISRIEYKDPYVRSPLVSKLLIDTAAAL 1911 Query: 766 KTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVELTVFDSP 825 T K P +DW ++ V++++ Sbjct: 1912 FKSSTSPVLKITTAPPKAPVSPPKHISNDWPDGHLVSSVQAEYGRLK-NIDVQVSLG--- 1967 Query: 826 RDIPHHRKLTVTFEDGQVLKIRFDQGMGYWRINFSSQWHYFDFRDDVSFQLVKMAQACKE 885 D H R + ++F DG+ + FDQG G W DF Q M ++ Sbjct: 1968 -DCGHGRFMELSFTDGRAATVIFDQGFGAWTPTVRDSRTLHDFTQTPYAQASSMQKSNP- 2025 Query: 886 GNVANSEESWATDVLVE 902 + + W T V++ Sbjct: 2026 --MLARKGVWPTYVVLR 2040 >UniRef50_B3Q0I0 Hypothetical conserved protein n=2 Tax=Rhizobium etli RepID=B3Q0I0_RHIE6 Length = 2041 Score = 587 bits (1513), Expect = e-166, Method: Composition-based stats. Identities = 182/670 (27%), Positives = 290/670 (43%), Gaps = 50/670 (7%) Query: 1 MYVNQRQNCD-CGSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGG--DEFSLQDEVPV 57 +Y+++ C C +PV E+ C++C E L A + ++ + DEF + Sbjct: 453 VYLDRCDLCPTCSAPVLEIVSCSECGEVLLEAVELPNDRIRGTRRDLGKDEFEAEATRED 512 Query: 58 EHDATEEKVE---KENSFQPPLI---IAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLI 111 + + E E L+ I G + + L R +I + + + Sbjct: 513 DGTGDDADDEADDTEQEMVGDLVGTEILIGAAAGPDFRPLHLSRTDWKIEAVASPGSASV 572 Query: 112 INDIEQVCSASGCGYRGMSGKQPF-RRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVG 170 + ++Q S C +G R G PF + + P +LE D D G Sbjct: 573 YSALKQD-SCPCCQTVATNGVDKLLRPVRFGAPFMIASAAPILLEGV-DPEVDRGVS--- 627 Query: 171 PDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNAN 230 P +GRR+++FTDSRQGTARM+ ++Q EAER+ +R V + Q TA +A+ Sbjct: 628 ----PAQGRRVLSFTDSRQGTARMSAKIQAEAERNFVRSFVYHTV--QHSLQIGTAVDAS 681 Query: 231 ADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTW 290 ++EK A + + P L Q + L A + L W Sbjct: 682 -EIEKTIASLEPVVAATRD------PALQNLLDQQRKALADASK--------PSLEGVAW 726 Query: 291 TEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQ 350 +MV L +R ++ V + PE+FN+ KL++ LL REF RRP+ SLE+ Sbjct: 727 DDMVARLSQRKEVGQWVKEVWEPRDPELFND---SRKLADFLLLREFARRPRTALSLESL 783 Query: 351 GLVQVGYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGS 410 GL ++ + ++ P + G ++DWR FL ++R ++ +D + +WI Sbjct: 784 GLARLRFAAIDNQTVVPPAFARHGKGIEDWRAFLYAITAFFLRGNSAVAIDPAVMHWITP 843 Query: 411 RFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWL 470 + ++ +R P + + WP + LLM G G Sbjct: 844 KAKTRALRAPGRTTDGERRFLGWPGVPRKGNPSTPQLLLMNGLGLDRSRPDHRADFEEIF 903 Query: 471 KEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTH 530 +AW QL AV D +R L + + D + C +T +I+D A G +P + Sbjct: 904 DKAWHQLQ---AVFNSDPDRPALDLRKAHIAPLPDGYYCALTRRIVDIAPLGSSPLVRAS 960 Query: 531 ISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVW 590 VA+ MP + + D+ EG K R+W+ + LR + W Sbjct: 961 --------RHSARRVAEPRKMPSLPAVLLGDVDFDEGRRKIREWLDGSDDVTALREDGAW 1012 Query: 591 TDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMT 650 +I+DRV Y R+AEHSAQQ + LQ YE FK G++N+LNCSTTMEMGVD V T Sbjct: 1013 NNISDRVALFADYSRSAEHSAQQDASVLQHYEAQFKAGKINILNCSTTMEMGVDIGSVST 1072 Query: 651 LASRSQQATI 660 + + +I Sbjct: 1073 VLMTNVPPSI 1082 Score = 218 bits (555), Expect = 8e-55, Method: Composition-based stats. Identities = 85/399 (21%), Positives = 145/399 (36%), Gaps = 48/399 (12%) Query: 521 KGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPL 580 G+ P L T E L V +PE A + +W Sbjct: 1674 FGVDPVLSTSTVDEVNRLLVVSAKPIVHVFLPE-----------ATDPGQLSEW------ 1716 Query: 581 IAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYE--KMFKN--GQLNVLNCS 636 A L W + + F A S+ +++L Y+ + F G +L+ + Sbjct: 1717 -ASLTQFGKW---YSQGYDVRFVLPDAALSSYDGAKKLAFYDLAQRFSRTGGNFPILSGN 1772 Query: 637 TTMEM-----GVDT---DRVMTLASRSQQATIPGPEWHLNDEL-VVRSLGYKTVELNEFI 687 T + G+ R ASR +PG W + VV++ T + Sbjct: 1773 LTTQANGAFAGISVTTAGRTTAWASRDASPWLPGTRWGQPATMPVVKAAVNWTPSFSPLE 1832 Query: 688 LPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDR 747 A +A R + I+ +L+ L+ FG + EE + + I V Y+D Sbjct: 1833 SKALLPSATSRYEPIK--GELDRSLTLFGNGMASKIRGLLEEL-GIPKTSTIESVIYSDP 1889 Query: 748 YLQNPVALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPG--NRPFHDWMSIADFQDFA 805 Y+++P+ + + L T V+L T + +PG N +DW A + Sbjct: 1890 YVKSPLVAKMFVDTVAALTKGSTPRPVVSLLTGDRPGTKPGMQNAISNDWRDSAVAEMVL 1949 Query: 806 DQWFAAALGRPVELTVFDSPRDIPHHRKLTVTFEDGQVLKIRFDQGMGYWR-INFSSQWH 864 ++ A + V+L + + + + H R + V F G+ I FDQG G W + Sbjct: 1950 KEY---AKRKDVDLDI--TFQRVAHGRYMHVRFPGGKEATIVFDQGFGAWNSVGNGGTST 2004 Query: 865 YFDFRDDVSFQLVKMAQACKEGNVANSEESWATDVLVEV 903 FDFRD Q M + G + + T ++ + Sbjct: 2005 RFDFRDPPVRQAESMGRC---GAMVSKTGLGPTYLVASI 2040 >UniRef50_A6BZ17 Putative uncharacterized protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6BZ17_9PLAN Length = 2084 Score = 581 bits (1497), Expect = e-164, Method: Composition-based stats. Identities = 213/855 (24%), Positives = 351/855 (41%), Gaps = 98/855 (11%) Query: 1 MYVNQRQNC-DCGSPVYEVAFCNDCNEPHLLARDKKGKLV---QWENK-GGDEFS--LQD 53 +Y + R+ C C S V++V CNDC E +L A + + W ++ D+F L D Sbjct: 462 VYFDHRKVCQHCNSLVFDVLLCNDCGEVYLGAHEGDENQLFANPWNDETESDDFEIELND 521 Query: 54 EVPVEHDATEEKVEKEN--SFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLI 111 E +E +A E + ++ + ++ D QT ++ + + + Sbjct: 522 EPSLEDEAQELDAVSVSPAGSTAKQLLCSRAPNDLMTGPVPYDTQTGKLADDDARTASFL 581 Query: 112 INDIEQV---CSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEG 168 E CG R Q F LGGPFY+ +P +L + K+ Sbjct: 582 FALPEPDTGSLRCVACGGRDSDRWQQFSTIRLGGPFYLGVSIPILLSHAPVHQDQTKKK- 640 Query: 169 VGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAP- 227 P GR++I+FTDSRQGTAR AVRMQ+E+E + +R + L W +A Sbjct: 641 ------PFEGRQMISFTDSRQGTARFAVRMQRESEINYVRSFIYHKL-WSLAKSVDSAEL 693 Query: 228 ----NANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAAT 283 A LEK+A+ + P+ +L Q + ++L Q +A Sbjct: 694 IRLEGTVASLEKVASTS---------------PELQQLYQEKLQKLNQLKSQQDTPQAT- 737 Query: 284 ILVSRTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKR 343 W+++ + L + + + + +E P +L+EM LFREF+ RP+R Sbjct: 738 ----IAWSDLSSALAKEPAVEFFIRESTRQRYLSAIHE---PNELAEMFLFREFLSRPRR 790 Query: 344 TNSLETQGLVQVGYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDE 403 NSLET GL + + +E P W + +W FLK+ +D+ VR + +++ + Sbjct: 791 KNSLETLGLASIWFPAIEAC-DPPEEWLSRRRGKSEWCVFLKLCVDYLVRTNYCSEIRRD 849 Query: 404 LKNWIGSRFSSKFVRNPESKDPEDNQNRRWPQIR-NGNVSHRLAKLLMLGAGFKTVNAAT 462 WIG RF + + P+ +D RWP +R N + R+ LL L G N Sbjct: 850 YLRWIGVRFRQRELVPPD-QDIISRLQVRWPSVRRNRGRASRIMMLLQLVLGLNLENDHD 908 Query: 463 IDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKG 522 +I+ L+ AW QLT + + L + T ++CPVT + LD G Sbjct: 909 KTLIDVILRAAWRQLTMS-DIFNQTTEGYQLNFNKSEIRIATSGYLCPVTRRFLDACIGG 967 Query: 523 LTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIA 582 ++PY + +LA + +A +V MP + ++ + + DW++ D + Sbjct: 968 ISPY------HDRRSLATFG--LAAEVVMPTLPFPFSRKDGHTVSPDEVSDWLATDSVTQ 1019 Query: 583 QLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMG 642 R+ VW+ NDR+V Y+ TAEHS Q S RLQ EK F+ G N+L+CSTTMEMG Sbjct: 1020 AARNAGVWSQFNDRIVFLSPYFETAEHSGQLSKSRLQFLEKRFRKGMTNLLSCSTTMEMG 1079 Query: 643 VDTDRVMTLASRSQQATIPGP-EWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKD 701 +D + ++A PGP W R + R Sbjct: 1080 IDIGGLTSVA---MNNAPPGPANWLQRAGRAGR-------------------RGITRAST 1117 Query: 702 IQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSI 761 + + ++L + F W H SL +DR +Q + LLGS Sbjct: 1118 LTLCRELPHGQAVFRNPLWPFTTPIHVPTVSLN----------SDRIVQRHINALLLGSF 1167 Query: 762 LRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVE--L 819 + + + ++ F + +R + + + +Q L Sbjct: 1168 IA---AESDNATKLECKWFFLPEQELPSRCHRFASWLEETAESCEQIVRGIERLQARTLL 1224 Query: 820 TVFDSPRDIPHHRKL 834 R + H ++ Sbjct: 1225 QSDSVRRILDHSSRM 1239 Score = 176 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 44/189 (23%), Positives = 74/189 (39%), Gaps = 10/189 (5%) Query: 695 AVERVKDIQIHK---QLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQN 751 ++ QI+K +LNG + G FW + MN+ V Y+DRYL + Sbjct: 1880 ESQKPNQCQIYKAGGELNGEVENLGVAFWGQIQKVAPWITEAMNDGPPLTVEYSDRYLVS 1939 Query: 752 PVALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRP-GNRPFHDWMSIADFQDFADQWFA 810 P+A+ LL +L+ L +++++ T+ D G H+W + + F Sbjct: 1940 PLAVRLLYEVLKELLAGSHGSSKLSIQTMKVDNHPVTGRCLHHNWQNERAQESTLKHVFN 1999 Query: 811 AALGRPVELTVFDSPRDIPHHRKLTVTFEDGQVLKIRFDQGMGYWRINFSSQWHYFDFRD 870 V L + H R + + + ++ I DQGMG+ S F F D Sbjct: 2000 HVAKSSVRLL---RKNKLAHARTMRIKWPGDRLAVITLDQGMGF---AESESQIPFSFHD 2053 Query: 871 DVSFQLVKM 879 Q + Sbjct: 2054 SPEKQANSI 2062 >UniRef50_A0KWV0 DEAD/DEAH box helicase domain protein n=2 Tax=Gammaproteobacteria RepID=A0KWV0_SHESA Length = 2120 Score = 568 bits (1464), Expect = e-160, Method: Composition-based stats. Identities = 205/721 (28%), Positives = 331/721 (45%), Gaps = 91/721 (12%) Query: 1 MYVNQRQNC--DCGSPVYEVAFCNDCNEPHLLAR---DKKGK--LVQWENKGGDEFSLQD 53 ++V++RQ C C SPVYE+ C C EP L A D G L+ E+ DE+S + Sbjct: 500 VFVSERQKCLDGCSSPVYELTHCAVCKEPSLAASLVIDSHGNRVLLSREHDDLDEYSDEI 559 Query: 54 EVPVEHDATEEKVEKENSFQPPLIIAAGETSE-------AGYTLQRLDRQTRRIGVINND 106 E D E V E+ + + I + ++S+ LD TRR+ + + Sbjct: 560 E-----DNQEIDVILEHKTRNNVQIFSSQSSDLERYKSFGSSVEAYLDLSTRRVKTRSEN 614 Query: 107 SIPLIIN--DIEQVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDE 164 ++ + D + + C F+RALLG PF + N+VP +L + D Sbjct: 615 TLAVRYTTADRDSYLRCACCDATEAVASSTFKRALLGAPFLMGNLVPELLRHIPRKNDDS 674 Query: 165 GKEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTS 224 G RLITFTDSRQGTAR + ++Q ++ER R + ++ R+ S Sbjct: 675 -----------LFGARLITFTDSRQGTARFSAKLQLDSERKWCRSKIYREIA--MRSSDS 721 Query: 225 TAPNANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATI 284 N ++A K E + Q K+ + E+L++ + Sbjct: 722 ELYND----PQIATFNKILDSNPEAATKDFILSQIKI---RLEELKK------------V 762 Query: 285 LVSRTWTEMVNELKERADIRGP--VLQYNHYLKPEVFNENGGPLK----LSEMLLFREFM 338 W V L +IR L Y+ P ++ L+ L+E+ L REF Sbjct: 763 SFKLNWVAAVELLANTDEIRLMAGDLDVEDYMLPGEYSNRDQRLENTKHLAELFLLREFA 822 Query: 339 RRPKRTNSLETQGLVQVGYQGLEKIHKSPL-----HWQEKGLTLDDWRDFLKVTLDHYVR 393 RRPK N+LET GLV++ Y L+ I + L W GL LDDW+ +LK+ LD YVR Sbjct: 823 RRPKNANNLETLGLVKIVYPALDSITEEDLRVGCREWGTLGLNLDDWKSYLKIILDFYVR 882 Query: 394 ESNFTQLDDELKNWIGSRFSSKFVRNPESKDPEDNQNRR---WPQIRNGNVSHRLAKLLM 450 E+ + NW+G + ++ ++ PE + + + + +P + GN H+L ++L Sbjct: 883 ENTLIDIHSYQVNWMGGKLFARLLQGPEFEGKSEEEKKAIWAFPSVNKGN-QHKLVRMLE 941 Query: 451 LGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLK--PDGNRFYLPKEHM------TFSL 502 L + ++ N L+ AW L +L+ DGN+ + H+ +F L Sbjct: 942 LFSK--RSAKDNPELFNGILRFAWRTLINK-EILQHYKDGNKEWREGYHLKLSNSASFEL 998 Query: 503 ITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQE 562 IT+A +CP+TN+ LDT+F+G++PYL + E + + + P++ + + SQ Sbjct: 999 ITNASVCPITNRWLDTSFRGISPYLTSKTEIEDCLVKNTNCKIPHPA--PDLLQSNSSQS 1056 Query: 563 DYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYE 622 R+W+ H+ I ++ + +W DI D + R+AEHSAQQ ++ L+ +E Sbjct: 1057 --------LRNWIRHNEFILNMKKQGIWRDITDAALLPPVMLRSAEHSAQQYTDNLKLFE 1108 Query: 623 KMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVE 682 K FK LNVLNCSTTMEMGVD ++ +A + + + R ++ Sbjct: 1109 KAFKKDFLNVLNCSTTMEMGVDIGSLVMVAMNNAPPST--ANYLQRAGRAGRRGESTSIV 1166 Query: 683 L 683 Sbjct: 1167 F 1167 Score = 190 bits (481), Expect = 3e-46, Method: Composition-based stats. Identities = 61/235 (25%), Positives = 100/235 (42%), Gaps = 13/235 (5%) Query: 652 ASRSQQATIPGPEWHLNDELVVRSLG-------YKTVELNEFILPAKATNAVERVKDIQI 704 A+ Q+ +W ++ + + L + L ++ T+ + + DI Sbjct: 1869 ATDDQRKISCNAQWGSSEGASLVAAKPMAVDLKTSPFNLEDLALKSELTSNIALIDDI-- 1926 Query: 705 HKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRP 764 +LN P ++FG + LF + + + I V YTDRYL +P++L L+ SI Sbjct: 1927 TTKLNVPFNRFGSSIFA-LFEEIIPRFKNVFDQGIENVTYTDRYLISPISLGLIISIFAH 1985 Query: 765 LKTKLT-DGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVELTVFD 823 +K + E+ DR ++ +I + DF D + G V F Sbjct: 1986 VKAIMGIRDFEIITCHPSAAGDRKPYCIADNFSNIDEVNDFIDS-VCSTYGINV-YPEFA 2043 Query: 824 SPRDIPHHRKLTVTFEDGQVLKIRFDQGMGYWRINFSSQWHYFDFRDDVSFQLVK 878 S DI H R LT T ++G+V++ FDQGMGYW FDF +F + Sbjct: 2044 SKNDIDHGRCLTFTLKNGEVVRFLFDQGMGYWATRRPYSRIKFDFESVGAFDINS 2098 >UniRef50_A5P8I3 Putative uncharacterized protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P8I3_9SPHN Length = 1988 Score = 554 bits (1426), Expect = e-156, Method: Composition-based stats. Identities = 185/706 (26%), Positives = 292/706 (41%), Gaps = 72/706 (10%) Query: 1 MYVNQRQNC-DCGSPVYEVAFCNDCNEPHLLARDKKGKLV-QWENKGGDEFSLQDEVPVE 58 + + R C C S V+E+ C DC EP L A D ++V + + DEF +D Sbjct: 435 VLFDHRDQCPHCQSMVFEIQNCLDCGEPFLPADDMGDRIVPRRSDHDADEFR-EDSYRDR 493 Query: 59 HDATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDI-EQ 117 +++ ++ P +IA S+A T D + G ++ + + E Sbjct: 494 DHDDDDEEDEHEGIGHPRLIAINPKSKA--TATAFDVSS---GEFTGEAGHFHLTQLDEG 548 Query: 118 VCSAS-GCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPG 176 C A G RG PFR G PF N P +LE ++ +LP Sbjct: 549 RCPACLGNKRRGRPAVFPFR---FGTPFLTQNAAPILLEGVSPHQAE--------HALPF 597 Query: 177 RGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKL 236 GR+LI+F+DSRQGTAR A ++ ER +RG + + + T L+K Sbjct: 598 DGRQLISFSDSRQGTARFAANIETNGERGFVRGFIYHAVQKAAQGSDLTDERREELLKKK 657 Query: 237 AARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNE 296 AA A + A + + + GG A IL W ++V+ Sbjct: 658 AALANLVAD----------------MPAFKDDIAKIDAELAGGAATGIL----WKDLVSA 697 Query: 297 LKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVG 356 L I G + + + E F++N L+ +L RE RRP+ N++ET GL ++ Sbjct: 698 LASEPAI-GMMAKVWDLDRSERFHDN--REALARFMLLRELARRPRNANAMETLGLARLR 754 Query: 357 YQGLEKIH--KSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSS 414 + +E+I K P +KG +++DWR FL +D+ +R ++DD W+ R Sbjct: 755 FPDIERIDPDKLPELVGQKGYSIEDWRGFLYYMVDY-LRGQFAIEVDDGDARWMPGRARP 813 Query: 415 KFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAW 474 + V P+ + P ++ WP + LL + IN + AW Sbjct: 814 RNVIGPD-QPPGAKRDVYWPLVNTKGRQPDSILLLASAMNLDLTSQRDRHEINQVMHAAW 872 Query: 475 AQLTGPLAVLKPDGNRFYLPKE-HMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISF 533 QL +L G F L E + AW CP+T ++L G +P L Sbjct: 873 NQLAP---LLSGVGGTFSLRLEQKAEIEAVDRAWQCPLTRRVLPRLVFGRSPNL------ 923 Query: 534 EHLTLAQYDTFVAQKVTMP-EIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTD 592 + + K +P E KL R++ + + R W+ D L+ LR ++WT Sbjct: 924 -----VGSGSKIDGKAVLPVEFPKLPRTRPLSSGDKKEIRGWLVEDKLVQALRQLHLWTY 978 Query: 593 INDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLA 652 ++D+ Y R EHSAQQ RL+ +E+ FK G +N+L CSTTMEMGVD + + Sbjct: 979 LHDQAALATPYLRAEEHSAQQPPHRLREFEEQFKEGDINLLACSTTMEMGVDIGSIEAVL 1038 Query: 653 SRSQQATIP--------GPEWHLNDELVVRSLGYKTVELNEFILPA 690 + +I + ++L F PA Sbjct: 1039 MTNVPPSIANYNQRAGRAGRRGQGFSTSLTIARNTPLDLETFADPA 1084 Score = 231 bits (589), Expect = 8e-59, Method: Composition-based stats. Identities = 70/256 (27%), Positives = 105/256 (41%), Gaps = 12/256 (4%) Query: 643 VDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDI 702 + TDR SR AT PG W + + + + I P V + Sbjct: 1733 ISTDRATGFFSRDMSATQPGERWGMGETHAIVAGTLSDPTAYSPINPEDLERQVAAGDQV 1792 Query: 703 QIHKQLN-GPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSI 761 ++ + P+ QFG+RF L EA + + + Y DRYL +P+ + L Sbjct: 1793 ELMQGFGQCPVGQFGKRFGSKL-KQQMEAAGVWRPGSLVRITYADRYLNSPLTMLLFLRT 1851 Query: 762 LRPLKTKLTDGAEVTLDTL--FKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVEL 819 L L + V +D L DR + HDW D + A+ G V+L Sbjct: 1852 CEALSADLKADSPVEVDILVQPLKNDRSPYQIKHDWTYEDDRAEVAE-LLGEKFGLDVDL 1910 Query: 820 TVFDSPRDIPHHRKLTVTFEDGQVLKIRFDQGMGYWRINFSSQWHYFDFRDDVSFQLVKM 879 V ++ H RKL + + DGQ + + DQG GYWRI S H DFR + Q ++ Sbjct: 1911 QVT---QNSDHGRKLELEYVDGQKVLVLLDQGFGYWRIAGSPPRH--DFRSAPAAQASEL 1965 Query: 880 AQACKEGNVANSEESW 895 ++ VA ES+ Sbjct: 1966 LRSSTA--VAGVGESY 1979 >UniRef50_A3EKW9 Dead/deah box helicase domain protein n=3 Tax=Vibrionaceae RepID=A3EKW9_VIBCH Length = 1629 Score = 551 bits (1420), Expect = e-155, Method: Composition-based stats. Identities = 214/722 (29%), Positives = 339/722 (46%), Gaps = 96/722 (13%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHL-----LARDKKGKLVQ--WENKGGDEFSLQ- 52 + +++R++C CGSP++E+ CN C L A D + + D+F+L Sbjct: 458 VSMSRRESCSCGSPMFEMVSCNGCGTSLLATNVKTAADSGDTFLHLTKPDSAIDDFALDI 517 Query: 53 ----DEVPV-EHDATEEKVEKENSFQPPLIIAAGE------------TSEAGYTLQRLDR 95 D+V E + E+ ++ P GE SE G+ + R++ Sbjct: 518 AGEDDDVSSYEDEEEGEQYDRFGLISPLPGDKTGEYWLDNQRKATTAKSEGGFLIHRVEG 577 Query: 96 QTRRIGVINNDSIPLIINDIEQVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLE 155 +G ++ C + + FR G PF ++ ++PT+LE Sbjct: 578 YRNSLGALS--------------LRCPCCQQTKVKNFEFFRYFKNGAPFMLSTVIPTLLE 623 Query: 156 YCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEIL 215 YCQD E K+G P GRR+ITFTDSRQGTAR + + QQ+AER LR ++ ++ Sbjct: 624 YCQDG-KKEQKKG------PWNGRRMITFTDSRQGTARFSAKSQQDAERQFLRSTLFHLI 676 Query: 216 SWHQRTQTSTAPNANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQ--AEQLEQAY 273 ++ + +A+LEK M D AK+S+ + E +E Sbjct: 677 LDKAIRESGSGSPESAELEKYK----------------KMLDMAKMSEDEDMVEFVESKI 720 Query: 274 QAATGGKAATILVSRTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLL 333 + G A++ VS +W++ + L ++ +++ + ++ + + P L+ +LL Sbjct: 721 ASLVG--ASSKPVSVSWSDAEDFLADQKEVQLWIKKFYEHFDDRM-EMVTHPKLLARLLL 777 Query: 334 FREFMRRPKRTNSLETQGLVQVGYQGL-EKIHKSPLHWQ------EKGLTLDDWRDFLKV 386 REF RPKR N+LET GLV + Y L +K + +P W EKG T +W +FL + Sbjct: 778 LREFNSRPKRQNTLETMGLVAMEYPLLAQKANTAPKEWLRFFDDVEKGRT--EWVNFLTL 835 Query: 387 TLDHYVRESNFTQLDDELKNWIGSRFSSKFVRNP-ESKDPEDNQNRRWPQI-RNGNVSHR 444 ++ +VR +L E NWIG+++ + ES + ++ WP++ R G++ R Sbjct: 836 AVNFHVRSLKAVRLTKEQLNWIGAKYQPTLLVAQGESTHIWNVES--WPKVTRGGSIQPR 893 Query: 445 LAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEH-MTFSLI 503 LA+LL A +N L++AW L VL P G+ F L E ++FSL+ Sbjct: 894 LARLLSCAFNIDLDEAYNRAEVNEILRQAWNALQSS--VLTPSGDGFRLELEQQVSFSLL 951 Query: 504 TDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQED 563 + CP T KI+D G+TPYL E + +++ P+ Sbjct: 952 KEKHQCPHTQKIIDKPLLGITPYLNASGEREE--------QLCRRLLTPDYPYPFGRDPK 1003 Query: 564 YAEG--LAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSY 621 E LAK R+W D LI +R EN W+DI DRV+E Y+R AEHSAQ + +L+ Y Sbjct: 1004 TGESVELAKTREWQEQDALI-DIRKENAWSDIADRVIERTPYFRVAEHSAQLKASQLRQY 1062 Query: 622 EKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTV 681 EK FK G++NVL+CSTTMEMGVD + +A + + R K++ Sbjct: 1063 EKDFKEGRINVLSCSTTMEMGVDIGGISVVAMNNAPPNP--ANYLQRAGRAGRRGESKSI 1120 Query: 682 EL 683 L Sbjct: 1121 AL 1122 >UniRef50_Q0FU13 Putative uncharacterized protein n=1 Tax=Roseovarius sp. HTCC2601 RepID=Q0FU13_9RHOB Length = 2003 Score = 547 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 194/674 (28%), Positives = 297/674 (44%), Gaps = 72/674 (10%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLARDKKGK--LVQWENKGGDEFSLQDEVPVE 58 +++ QR++C CG+PV+E+ C++C P LLA ++ GK ++ + +E + +V E Sbjct: 449 IHLFQREHCGCGAPVFEIGACSECGTPWLLAHEESGKQRILHQSDSDTEEDDFRLDVEPE 508 Query: 59 HDATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGV--INNDSIPLIINDIE 116 D + V ++ + S + L+ D R + + +I L +D + Sbjct: 509 DDGDDASVSAAR------LVGPADDSHPVHQLRHSDAVVRDVLTDEPGHSTIRLCSHD-D 561 Query: 117 QVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPG 176 + C A R Q F G PF + N +P +LE +G +G P Sbjct: 562 RGCCAGAHHSRSRVAVQRF-----GSPFLLGNAIPQLLEAMPRP---DGIQGPAPMG--- 610 Query: 177 RGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKL 236 GRRL++FTDSRQGTAR A ++QQEAER R ++ + Sbjct: 611 -GRRLLSFTDSRQGTARFAAKLQQEAERGLTRAAIWHAVQSKAAGD-------------- 655 Query: 237 AARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNE 296 +A + R Q + R G P A L A +QL A GG A WTEM+N Sbjct: 656 PTKAAELRAQLDALR--GNPLMASLLPALEKQLA----EAEGGFAP-----VPWTEMLNT 704 Query: 297 LKERADIR---GPVLQYNHYLKP-EVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGL 352 L + D+R G V Q P P++L+++LL RE RRPK N++ET GL Sbjct: 705 LAQVPDLRSFAGDVWQGRGASHPFGGLTLAREPVELAKLLLLREIFRRPKLQNNVETMGL 764 Query: 353 VQVGYQGLEKIHKS---PLHWQEKGLTLDDWRDFLKVTLDHYVRESNFT---QLDDELKN 406 +V + LE+ + P +E G W + +D R Q +L + Sbjct: 765 ARVCWPELERQMEESDIPAPLREAGHEAPVWIALGQAAIDMAFRNRLAVHMQQTPVDLAH 824 Query: 407 WIGSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDII 466 WI R ++ V P + E + +RR + S L +L+ +A ++ Sbjct: 825 WISPRQAATQVLEPGVEFDETSASRRTHKWWTAYSSAGLVQLIYRLIDGDDESATDLERC 884 Query: 467 NTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPY 526 T L WA L + + + D + L + AW CPVT K+L G+TP Sbjct: 885 QTVLDALWATLRAKV-LTRADPGCWQLDFAKSALIGMESAWQCPVTGKLLPYTLAGITP- 942 Query: 527 LPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRS 586 S E + +VT+P + + AE A+ W++ D IA LR Sbjct: 943 -NDAASPEAMA----------EVTLPHLPVTSPAGLTGAE-RARVESWLTTDETIATLRK 990 Query: 587 ENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTD 646 + +WTD+ DR + R EHSAQ E L+ YE F+ G++N+LNCSTTMEMGVD Sbjct: 991 KGLWTDLQDRAAAFAPFLRAQEHSAQIDRESLKGYEDAFRKGRINILNCSTTMEMGVDIP 1050 Query: 647 RVMTLASRSQQATI 660 V T+ + + Sbjct: 1051 NVGTVVNTNVPPAP 1064 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 52/241 (21%), Positives = 97/241 (40%), Gaps = 18/241 (7%) Query: 646 DRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDI--Q 703 + + ++++ +P W +E + K +L L A+ I Sbjct: 1755 GQAQAVTAQTEDNAVPDGRWGRPEEGPILLGPRKPEDLGA-SLSAEKLAVFNEGNSIYAD 1813 Query: 704 IHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILR 763 + + + FG+ FW ++ L + V Y+DRYL+ P+ + LL +LR Sbjct: 1814 AGTRFDRSVGHFGREFWKMVREMRP---QLSREVPLASVTYSDRYLRAPLPVRLLYEVLR 1870 Query: 764 PLKTKLTDGAEVTLDTLFKDKDR--PGNRPFHDWMSIADFQDFADQWFAAALGRPVELTV 821 + + + + + T +D++ P +W +D AL V++ + Sbjct: 1871 TMPDR-NEATTIMVRTSAQDRESRFPSRDIEDNWT-----EDRLRLQTMKALLPGVDVRI 1924 Query: 822 FDSPRDI-PHHRKLTVTFEDGQVLKIRFDQGMGYWRINFSSQWHYFDFRDDVSFQLVKMA 880 PR + PH R +T+ DG+ +I DQG+G W + FD DD Q +A Sbjct: 1925 L--PRKLCPHPRSFELTWRDGRTARIHLDQGLGSWTVA-DHLAPRFDVEDDPKRQASALA 1981 Query: 881 Q 881 + Sbjct: 1982 K 1982 >UniRef50_A1U8P2 Helicase domain protein n=1 Tax=Marinobacter aquaeolei VT8 RepID=A1U8P2_MARAV Length = 1422 Score = 479 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 200/602 (33%), Positives = 293/602 (48%), Gaps = 72/602 (11%) Query: 209 GSVVEILSWHQRTQTSTAPNANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQ 268 G V +IL Q + NA A ++ +QAE+ GM A +++AE+ Sbjct: 22 GLVFQILRNKQAKADAGPKNAPT------ASYEELIQQAEQLEKMGMHAAASGVRSEAEK 75 Query: 269 LEQAYQAATGGKAATILVSRTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKL 328 L +GG + L W E+V +L D++ +L YN Y P++FN N G + Sbjct: 76 LN------SGGSSEDRL-EVPWPELVEDLAATNDLKYSILDYNRYANPQLFNGNEGSYSM 128 Query: 329 SEMLLFREFMRRPKRTNSLETQGLVQVGYQGLEKIHKSPLHWQE-----------KGLTL 377 + +LL REF RRPK NS ET GLV VGY+GLE+I +P W E LTL Sbjct: 129 ARVLLLREFARRPKNQNSTETLGLVSVGYKGLEQITHTPDFWTETQARSADGKSESRLTL 188 Query: 378 DDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVRNPESKDPEDNQNRRWPQIR 437 DDW+DFLKV LD +VRE+ F + + ++W+G+RF+ K + P S D +++ WPQ + Sbjct: 189 DDWKDFLKVALDFHVRENTFLRFGETERSWMGARFAPKELYAPGS-DVSGTRDKAWPQFQ 247 Query: 438 NGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEH 497 G+ RL K+L LG G T + + +N WLK AW L +L+ G + L +E Sbjct: 248 KGS-QSRLVKVLSLGTGLNTELESHRNKLNGWLKAAWQALV-KSQILQTQGGGYALSRET 305 Query: 498 MTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKL 557 +TFSL AW+CPVTN+++DT F+GLTPYLP E + ++ MPE L Sbjct: 306 LTFSLPKSAWVCPVTNRLIDTTFRGLTPYLPNKAEVEK--------YRCTRIDMPEFTSL 357 Query: 558 DRSQEDYAEGLAK-ARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSE 616 + E EG+ + R+ V+ + ++A LR +N+WTDI+DR EGGFYYRTAEHSAQQ++E Sbjct: 358 --APEGETEGVLRSIRNRVAANDVVASLREQNLWTDISDRTAEGGFYYRTAEHSAQQAAE 415 Query: 617 RLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSL 676 RLQ YE FK G++NVLNCSTTMEMGVD + + + + R+ Sbjct: 416 RLQRYEDDFKKGKINVLNCSTTMEMGVDIGGISAVVMNNVPPHP--ANYLQRAG---RAG 470 Query: 677 GYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNN 736 + L + F W ++ Sbjct: 471 RRSEPRAVAYTLCKPDPHNTRA----------------FQNPQW-------PWVTAIPAP 507 Query: 737 T-RITGVHYTDRYLQNPVALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDW 795 ++ R++ + LL + L+ D + + F + F DW Sbjct: 508 VITLSAAPLVQRHVNS----FLLANFLKSETDSEDDRTRLNV-HWFFGGNPSVCERFVDW 562 Query: 796 MS 797 + Sbjct: 563 LD 564 Score = 258 bits (658), Expect = 9e-67, Method: Composition-based stats. Identities = 82/392 (20%), Positives = 162/392 (41%), Gaps = 40/392 (10%) Query: 527 LPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAK-ARDWVSHDPLIAQLR 585 L + E + + + +PE + + + R W++ LR Sbjct: 1039 LNRRAALEWVAHSGIKDHLC----LPEPFASVPGAAYWPYDPERFVRHWINKGAKAVSLR 1094 Query: 586 SEN---VWTDIND----------RVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNV 632 + W D+ + R ++G A S E Q + + G ++V Sbjct: 1095 LKGDPSEW-DLGNPDFRRKLMGWRAIDGLRVTLILPKGATLSEEIKQELANLGRFG-IDV 1152 Query: 633 LNCSTT------------MEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKT 680 S T ++ ++ D ++TL + S A PG W D+ + ++ Sbjct: 1153 ---SETDEDHPNPDIRMPLQFELEKDGLVTLITNSTNAQSPGENWLSGDDQALWVYSHQE 1209 Query: 681 VELNEFILPAKATNA-VERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRI 739 + L +A +++ +LNG + + FW +L ++ +I Sbjct: 1210 PVFSASSLDMAGWSAQPSGAAVVELTTELNGSIQDLARNFWSILKQKAPSYAEAIDQEKI 1269 Query: 740 TGVHYTDRYLQNPVALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIA 799 + Y DRYL++P A+ +L +IL+ ++ + D +++ T+ D R + DW++ Sbjct: 1270 VSLQYEDRYLKSPWAVVMLANILKAVE--IGDETSLSVITMPGDGRRDSRMAWDDWVNAE 1327 Query: 800 DFQDFADQWFAAALG-RPVELTVFDSPRDIPHHRKLTVTFEDGQVLKIRFDQGMGYWRI- 857 + + + AALG + V+ V + R++ H R L++ G+ +K+ FDQGMGYW + Sbjct: 1328 TQRVVSGAFLRAALGVKQVDFQVNNDRRELTHRRILSIGLASGRTIKLAFDQGMGYWEMK 1387 Query: 858 NFSSQWHYFDFRDDVSFQLVKMAQACKEGNVA 889 F YF+F + Q+ +M + K+G + Sbjct: 1388 AFRHDLKYFNFDLGLEAQVQRMLELDKDGRLV 1419 >UniRef50_B0MUI1 Putative uncharacterized protein n=3 Tax=cellular organisms RepID=B0MUI1_9BACT Length = 2047 Score = 434 bits (1116), Expect = e-120, Method: Composition-based stats. Identities = 162/723 (22%), Positives = 273/723 (37%), Gaps = 87/723 (12%) Query: 5 QRQNCD-CGSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEF------SLQDEVPV 57 Q NC C S + E+A C+ C P ++ K + D +D + + Sbjct: 452 QNMNCPVCKSKMLELATCSSCGSPIIVGETNTTKGFRMHTNVIDLDKSLFYEQKEDLIDL 511 Query: 58 EHDATEEKVEKENSFQPPLIIAAGETSE-----AGYTLQRLDRQTRRIGVINNDSIPL-- 110 E E VE+ + A A T + Q +I ++ D+ Sbjct: 512 EDMGNIEDVEQNEADGFSRFFFAIPKKACLRKNANRTYHIFNHQNGKIELVPEDNRSNKC 571 Query: 111 ------------------IINDIEQVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPT 152 D +C G R + + Sbjct: 572 FTSLKSEESIPVIYQSLRHSGDNHVLCPHCGNNLSEFKNLDYLR---ISATQIGRTLATL 628 Query: 153 VLEYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVV 212 +L+ + S++ + GR+ ITFTDSRQG+AR A+ + Q+ ERS +R S+ Sbjct: 629 LLDNAEPIDSNDAD-------VVYEGRKYITFTDSRQGSARSAMGLNQDVERSWIRASIF 681 Query: 213 EILSWHQRTQTSTAPNANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQA 272 L A+ L + E+AE + + + L E+ +Q Sbjct: 682 HKL-------------ADMRLNDVKPGGLTPDEEAE--YNAYLSIREHLPTLLFEKFKQL 726 Query: 273 YQAATGGKAATILVSRTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEML 332 + G +W ++ L+ ++ + Y H K + L Sbjct: 727 EKKKNGIPVIPNPEEVSWGQISQSLENDSNFK---KLYEHVDKARGRKNFENATDYLKAL 783 Query: 333 LFREFMRRPKRTNSLETQGLVQVGYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYV 392 L +F PKR NSLET G V++ Y L K K P Q K T DW++FLK+ +D+ + Sbjct: 784 LVDQFGWIPKRANSLETMGFVRLVYPAL-KNAKCPALLQ-KRCTDTDWQNFLKICMDYVI 841 Query: 393 RESNFTQLDDELKNWIGSRFSSKFVRNPESK-DPEDNQNRRWPQIRNGNV-----SHRLA 446 R L K+++ + S+ + +W ++ + +RL Sbjct: 842 RGGRHYMLSGAYKDYLTQNKYCSPIYPSNSELRKNGSPVSKWFKVNVSSKGINENQNRLV 901 Query: 447 KLLMLGAGFKTV---NAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFY---LPKEHMTF 500 LL + + N I IN+ L AW L + N+ Y L + + Sbjct: 902 LLLCAVLDYDDISQINQIKIADINSILDAAWDFLKQNVLEATDVENQGYMLDLMGDKVKL 961 Query: 501 SLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRS 560 LI ++CPV N I+D F G +P + +IS E+ +D F + + ++ Sbjct: 962 QLIEKGYLCPVDNVIIDAPFCGYSPRMNGYISREN-----FDRFKIKTEFVNPLFPF--- 1013 Query: 561 QEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQS 620 + + +W+ + ++ ++ V+ +N RV + +AEHSAQQSSE L Sbjct: 1014 -KSADQTEKNVMEWIEKN--FSEQKAAGVFGVMNSRVFASKPIFISAEHSAQQSSEDLDR 1070 Query: 621 YEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKT 680 YE+ F G++N+L+CSTTMEMGVD + + + + R K Sbjct: 1071 YEREFNEGKINILSCSTTMEMGVDIGGITEVVMNNVPPK--SSNYLQRTGRAGRRSETKA 1128 Query: 681 VEL 683 + L Sbjct: 1129 LAL 1131 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 75/236 (31%), Gaps = 19/236 (8%) Query: 646 DRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELN-EFILPAKATNAVERVKDIQI 704 V T ++ T W D + + L+ I + +A + Sbjct: 1795 GIVKTYFGKNID-TSYSKNWGSGDVFI----TTQPNSLSYADINRMQLLSAFSSDDSSFM 1849 Query: 705 HKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNN--TRITGVHYTDRYLQNPVALALLGSIL 762 + S G+ F + + +++N + + Y+DRYL+ P+ LL ++ Sbjct: 1850 FEYRIREHSSLGRFFDSLKAPETGNWNRIISNLRGKAVSIEYSDRYLKTPLGCMLLAKMI 1909 Query: 763 RPLKTKLT----DGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVE 818 LK + + + + + D+ + F G E Sbjct: 1910 SSLKNEADLVLVSIKVIVTNIVSINDPDMAVNAIKDFTNGKKRNHFLKDAIFELTGIEPE 1969 Query: 819 LTVFDSPRDIPHHRKLTVTFEDGQVLKIRFDQGMGY-WRINFSSQW--HYFDFRDD 871 + + H R LTV D + IR D G+ W DFR+D Sbjct: 1970 IQDTGY---VEHERCLTVK-ADNAEICIRPDAGIAKGWAPFGRDNAECTDRDFRED 2021 >UniRef50_UPI0001BC7B8F putative helicase related protein n=1 Tax=Bacteroides sp. D2 RepID=UPI0001BC7B8F Length = 2100 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 143/724 (19%), Positives = 269/724 (37%), Gaps = 136/724 (18%) Query: 14 PVYEVAFCNDCNEPHLLAR------DKKGKLVQWENKGGDEFSLQDEVPVEHDATEEKVE 67 P+ E++ C C E +A+ ++ G E D F L+ E++ + Sbjct: 456 PLLELSRCKHCGEYVAIAKINTSPGEENGTYQPLERDDSDMFDLE----------EDEED 505 Query: 68 KENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCSASGCGYR 127 + + + T ++ + + + L++N CS C + Sbjct: 506 AVQKYGIIGLAKDDIATGDNNTSMMVEGKKLVPASAGSGAWHLVVNTQ---CSCPYCNSK 562 Query: 128 -------------------GMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEG 168 + Q FR + F + P+VL + +S + + Sbjct: 563 LAHKKNNEEEVTADATEEMESAYLQKFRTS---ADFISRQMAPSVLNQLEKGSSKDPAKI 619 Query: 169 VGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTS---T 225 + D G++ I+F DSRQ A+ ++ E ER + ++ LS + + Sbjct: 620 MLHD-----GQQFISFADSRQLAAKATLKQNLEQERLWVYSTIFHALSKQKAESGTVQQE 674 Query: 226 APNANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATIL 285 +A+L LA + + + + +K QA Q+++ + T + A +L Sbjct: 675 IDKVSAELVALALKGDTDQ----------LAEASKKIQALKAQMKKYF---TWQEIADLL 721 Query: 286 V-SRTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRT 344 + S+ T + +R+ + Q + K G K L+ RP Sbjct: 722 MKSKYCTVFCRQFVKRSGDSDELGQDGNIPK-------GVLEKYVHSLMVMYLSTRPASA 774 Query: 345 NSLETQGLVQVGYQGLEKIH--------KSPLHWQEKGLTLDDWRDFLKVTLDHYVRESN 396 + ET GL Y L+ I L + ++ +DW L++ +D+ VR + Sbjct: 775 AAPETMGLFHTHYPQLQDIALPEAVEAFNQVLDIESNRISQEDWHHLLQIFMDYTVRSNQ 834 Query: 397 FTQL----DDELKNWIGSRFSS-----KFVRNP--ESKDPEDNQNRRW---------PQI 436 L + + + RF++ + ++ P E P ++ R+ P++ Sbjct: 835 SLFLKLSNTNPIDIFACERFATEKPRRRPIKKPVVEVGKPSHSRIVRYLCGLIKREKPEL 894 Query: 437 RNGNVSHRLAKLLM--LGAGFKTVNAATIDIINTWLKEA--WAQLTGPLAVLKPDGNRFY 492 + G+V + L + A ++ VNA N L+E+ W + RF Sbjct: 895 KTGDVYRQYFNQLAAVVDALWEDVNAPK----NHLLEESVHWNSSNQQFERDSNEATRFN 950 Query: 493 LPKEHMTFSLITDAWIC----------PVTNKILDTAFKGLTPYLPTHISFEHLTLAQYD 542 L ++ F L D ++C V + ++ FKG PYL I E + L+ Sbjct: 951 LA--NLCFKLYEDVYLCDTNSDSSTRHTVCLRPIENYFKGFAPYL---IGNEVVELSN-- 1003 Query: 543 TFVAQKVTMPEIWKLDRSQEDYAE--GLAKARDWV-SHDPLIAQLR---SENVWTDINDR 596 + E+W++ E +E + K W +H L+ E V+ + Sbjct: 1004 -------DLHEVWEVYPYYEGTSEEVTIEKVEAWAETHRSLLWNHHIWGKEGVFGNRLTE 1056 Query: 597 VVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQ 656 + + + AEH+AQ E +S + FK+ +N+L CSTTMEMGVD + + S Sbjct: 1057 IHQVPNLFIQAEHTAQVDKEVSRSLQSEFKDHAINILACSTTMEMGVDLGNLEVVMLSSV 1116 Query: 657 QATI 660 Sbjct: 1117 PPQP 1120 >UniRef50_D1P9G0 Putative DEAD/DEAH box helicase n=1 Tax=Prevotella copri DSM 18205 RepID=D1P9G0_9BACT Length = 2132 Score = 390 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 144/718 (20%), Positives = 249/718 (34%), Gaps = 116/718 (16%) Query: 13 SPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHDAT---------- 62 +P+ E++ C C E LA D ++ +D + Sbjct: 475 APLLELSRCKHCGEYVALASVNTEDWTYEAIATDDSDMFDLDMAENNDNSTKKYAIFGLS 534 Query: 63 EEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINN-----DSIPLIINDIEQ 117 EK K + ++ G+ ++ +G I ++ ++ +Q Sbjct: 535 NEKNMKGDGNVKFRLVPGGKLQPLAPADEKETGNWHVVGNIQGCCPYCNAKQTKNHNTDQ 594 Query: 118 VCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGR 177 G + Q FR L F + P++L+ D+G G L Sbjct: 595 DVEGDANGNMEDNRLQKFR---LSADFISRMMAPSILDQL-----DKGDSKTGGIVLH-D 645 Query: 178 GRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLA 237 G++ I+F DSRQ A+ ++ E ER ++ L + + L + Sbjct: 646 GQQYISFVDSRQAAAKATLKQNLEQERMWFNSTIYHELCRRKANGLTKEAAMAQILAAVQ 705 Query: 238 ARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNEL 297 A + + PD K+ Q Q +++ Y TW+E+V L Sbjct: 706 ADPMSMMKYTPMMANLQSPD-PKVVQKQLDEMSCKY--------------MTWSEIVELL 750 Query: 298 KERADIRGPVLQYNHYLKPEVFNENGGPL-------KLSEMLLFREFMRRPKRTNSLETQ 350 K D PV + +E L K + ++ RP S ET Sbjct: 751 KN--DPYCPVFASVFVKRSGDSDEVEDGLPSDEIIDKYIQSIMVMYLAHRPASAASPETL 808 Query: 351 GLVQVGYQGLEKIHKSPLHWQE---------KGLTLDDWRDFLKVTLDHYVRESNFTQL- 400 GL + Y LEKI K P ++ +T +DWR+ ++V LD+ VR + L Sbjct: 809 GLFETCYPQLEKI-KLPKAVEDFNDLLDNPVNQITEEDWRNLMQVYLDYTVRSNQSFYLR 867 Query: 401 ---DDELKNWIGSRFSS-KFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFK 456 +D++ + RF++ K R P +K + ++ + L L+ Sbjct: 868 IPGNDKIDIFSTVRFATEKPRRRPFNKPKLEEG-----KVSTARIVRYLCALIARDDNTL 922 Query: 457 TVNAATI---DIINTWLKEAWAQLTG-PLAVLK---------------PDGNRFYLPKEH 497 T+N A I+ + W LTG +L+ + RF L Sbjct: 923 TMNDAQRQYFHEISAVIDSLWETLTGDEYKILQVGQRLDDTGHFVNEKDNAPRFNL--ND 980 Query: 498 MTFSLITDAWIC---------PVTNKILDTAFKGLTPYL--PTHISFEHLTLAQYDTFVA 546 + F L D ++C V + + FK +PYL T + Q++ F Sbjct: 981 LCFKLYDDVYLCDTKADGNRHAVCLRPIGNNFKRFSPYLEGTTPVELREDLHEQWEAFPY 1040 Query: 547 QKVTMPEIWKLDRSQEDYAEGLAKARDWV-SHDPLIAQLR---SENVWTDINDRVVEGGF 602 K + E W +H L+ ++ V++D + + Sbjct: 1041 YKGSAKE------------GDKKTIESWAKTHRALLWNNNIWGTDGVFSDRLEDIHAFPN 1088 Query: 603 YYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATI 660 + EH+AQ + + FK+ +N+L CSTTMEMGVD + + S Sbjct: 1089 LFVQQEHTAQVDKSVARGLQSKFKDHTINILACSTTMEMGVDLGNLEVVLLSSVPPLP 1146 >UniRef50_A1U8P4 DEAD/DEAH box helicase domain protein n=2 Tax=Alteromonadales RepID=A1U8P4_MARAV Length = 685 Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats. Identities = 96/210 (45%), Positives = 118/210 (56%), Gaps = 6/210 (2%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHD 60 +YV QR CDCGSPVYE FC+DC PHL A L Q DEFSLQ E D Sbjct: 470 VYVQQRGKCDCGSPVYEAGFCDDCKTPHLTAEHAHPYLRQASPYVIDEFSLQ-----EDD 524 Query: 61 ATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCS 120 + + + + T + + LD T +G ++ ++ I E+ Sbjct: 525 SDDSGISERAGSSLKGRAVIAPTPHEAFVSEDLDLDTAELGKLDAENSITISQADERDAI 584 Query: 121 ASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRR 180 CG G + R++ LG PFYV+N VPTVLE+C D S E +G P+SLP RGR+ Sbjct: 585 CVNCGSAGKTAGGFLRKSYLGAPFYVSNAVPTVLEFCPD-PSREDCDGASPESLPARGRK 643 Query: 181 LITFTDSRQGTARMAVRMQQEAERSRLRGS 210 LITFTDSRQGTARMAVRMQQEAERSRLRG Sbjct: 644 LITFTDSRQGTARMAVRMQQEAERSRLRGL 673 >UniRef50_A3EKW8 Copper-binding protein n=1 Tax=Vibrio cholerae V51 RepID=A3EKW8_VIBCH Length = 429 Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 51/254 (20%), Positives = 99/254 (38%), Gaps = 34/254 (13%) Query: 664 EWH--LNDELVVRSLG---YKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQR 718 +W ND + K + L + + +K + +H++LNG + FG + Sbjct: 195 QWGYFSNDTDTLICGTDSFIKPTLFDSTRLNFEGGS----LKKVVVHEELNGAVKDFGFK 250 Query: 719 FWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKTKLTDGAEVTLD 778 FW +F E +LM + ++ Y+DRYL P+ L+L S L+ L + Sbjct: 251 FWSYVFKHSPELMALMKSQQLQSATYSDRYLAAPLPLSLCFSALKFLGEHYKGCTTQVVT 310 Query: 779 TLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPV------ELTVFDSPR-DIPHH 831 +P +F D++ + R + ++ P+ ++PH Sbjct: 311 GELHRSAKPMT----------VQDNFEDEYSRDKVFRLIADATEANMSFRSRPKYELPHA 360 Query: 832 RKLTVTFEDGQVLKIRFDQGMGYWRINFSSQWHYFDFRDDVSFQL--VKMAQACKEGNVA 889 R L + F+ G + + DQG GYW + + + + ++A G+ Sbjct: 361 RVLELVFDSGTKVTLWLDQGFGYWYADKYLP------ENQLERDVSEEELADIISAGHSI 414 Query: 890 NSEESWATDVLVEV 903 ++TD+ V + Sbjct: 415 IRSGKFSTDIFVSL 428 >UniRef50_Q8NSE5 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster n=1 Tax=Corynebacterium glutamicum RepID=Q8NSE5_CORGL Length = 1600 Score = 149 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 117/659 (17%), Positives = 202/659 (30%), Gaps = 145/659 (22%) Query: 14 PVYEVAFCNDCNEPHLLARDKKGKLVQWENKG-GDEFSLQDEVPVEHDATEEKVEKENSF 72 P+YE+ C C H+ A + G LV EN DE L+ V + T + E + Sbjct: 508 PMYEMGACIKCGTVHISAHNDSGFLVPPENSSNFDEQQLKWVVLTDDFETADIDEDDLET 567 Query: 73 QPPLIIAAGETSEAGYTLQRLDRQTRRI--GVINNDSIPLIINDIEQV----CSASGCGY 126 + E + +L+ + + G ++ + + +E + + CG Sbjct: 568 DADENVKVLELQKLCTACGKLNGKNSLLCSGCSSHHDQFIDVKILEPRNGSQLTCTRCGG 627 Query: 127 RGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLITFTD 186 R + + R P +T + +L D + G GR+L+TF+D Sbjct: 628 REKNLIRRLRTDSNAAPSVLTTSLFQLLPESADQDTSRKI---------GAGRKLLTFSD 678 Query: 187 SRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARAKQAREQ 246 SRQ A A +Q R R ++E L + T+ A +E+ +RA + + Sbjct: 679 SRQAAAYAAPYLQASYTRLLERRILIETLRDEEFTEG-------ASIERWISRASEVAKN 731 Query: 247 AEEYRSWGMPDQAKLSQAQ--AEQLEQAYQAATGGKAATILVSRTWTEMVNELKERADIR 304 + P + L + ++ + T E +++L R Sbjct: 732 NRVLANNLNPRETLEQTGNWVFADLASTVRRSSTEGLGLAKIELT-PEALSQLS----FR 786 Query: 305 GPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGLEKIH 364 P+ E+F + + +EF + Sbjct: 787 KPLG--------EMFGDPDAADAFFNLF-AQEFRHK---------------------GAI 816 Query: 365 KSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVRNPESKD 424 P + L+D R R D G R S++ + + Sbjct: 817 NCPDYV-----NLEDER--------FGPRRGQHFFTKD------GGRKSTRRLYS----- 852 Query: 425 PEDNQNRRW-PQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGP--L 481 W PQ N + K+L + I T L W T L Sbjct: 853 --------WIPQRGTNNRKDFITKVLNRIGQAGDEG----ENITTLLHHLWNDYTNSEIL 900 Query: 482 AVLKPDGNRFYLPKEHMTFSLITDA--WICPVTNKILDTAFKGLTPYLPTHISFEHLTLA 539 V + L + S + C GL P+ F L Sbjct: 901 KVPGEKAEGYTLNYNSLQVSPGKQHSWYECDTCRNTTPFNVLGLCPH-----GFCKGKLK 955 Query: 540 QYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVE 599 + DT ++PE R + ++ Sbjct: 956 EIDT------SLPEY------------ANNHYRKLATSLEILP----------------- 980 Query: 600 GGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQA 658 EH+AQ + +K F G++NVL+CSTT E+GVD + ++ R+ Sbjct: 981 ----LSAKEHTAQWTPTEAAEVQKEFIEGKINVLSCSTTFELGVDVGDLQSVMMRNVPP 1035 >UniRef50_Q881M9 Helicase domain protein n=1 Tax=Pseudomonas syringae pv. tomato RepID=Q881M9_PSESM Length = 459 Score = 146 bits (367), Expect = 5e-33, Method: Composition-based stats. Identities = 43/97 (44%), Positives = 67/97 (69%) Query: 563 DYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYE 622 D +E + AR W++ +P + LR E +W+D++DR++EG Y+RTAEHSAQQ +L+SYE Sbjct: 2 DASEKILNARAWLNSEPKVIGLRDEGLWSDLHDRIIEGASYFRTAEHSAQQPKAKLKSYE 61 Query: 623 KMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQAT 659 F++G +N+L+CSTTMEMG+D + +A + Sbjct: 62 TQFRSGHINLLSCSTTMEMGIDISGITAVAMNNVPPQ 98 >UniRef50_Q3M825 DEAD/DEAH box helicase-like n=1 Tax=Anabaena variabilis ATCC 29413 RepID=Q3M825_ANAVT Length = 2093 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 125/696 (17%), Positives = 225/696 (32%), Gaps = 134/696 (19%) Query: 1 MYVNQRQNCD-CGSPVYEVAFCNDCNEPH-LLARDKKGKL--VQWENKGGDE----FSLQ 52 +Y+N+++ CD C SPV E+ C C + + + KL + N+G E ++L Sbjct: 543 LYLNEKRTCDDCNSPVLELGSCYQCGQAYAFTQINGVSKLEPLPRSNQGLRENDKIYTLT 602 Query: 53 DEVPVEHDATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLII 112 + EE E+E P + + + T + N + Sbjct: 603 SGLLDSITEEEEIGEEEQESSPTNTLIIRQRDGWIGLPTSV-TFTNKSSEPNEFYLAWHR 661 Query: 113 NDIE-----QVC---SASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDE 164 + C + CG R + Q R + + ++ ++ + + D+ Sbjct: 662 PRDKDAKDLSGCYLPRCAACGTRPIRA-QAINRFVAYTDEPLEAMIDSLFDLLPESQEDQ 720 Query: 165 GKEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTS 224 G R+L+TF+D RQ A A Q+ +V + W Q Q Sbjct: 721 GSASK---------RKLLTFSDGRQDAAFFASDYQRTHTE-----TVYRQIIW-QAFQEL 765 Query: 225 TAPNANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATI 284 + + +L + KQ ++ +P + S+ Sbjct: 766 NPDDDIVSINQLINKVKQ------QFLETSIPHPDRDSRK-------------------- 799 Query: 285 LVSRTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRT 344 N L D + Y ++ LL REF R Sbjct: 800 ----------NYLSYYPDDEESLENYRDC--------QDSAEARAKELLLREFALPFNRR 841 Query: 345 NSLETQGLVQVGYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDEL 404 ++LE L + L L +E ++ + + FL V D +R + +D Sbjct: 842 STLEAYALFA-CHIELRDERLIELVAREFEISNAEAKIFLIVLTD-IIRRTGIVSIDGAS 899 Query: 405 KNW-------------IGSRFSSKFVRNPESKDPEDNQNRRWPQI------RNGNVSHRL 445 + + + + SK E E + + P + G VS Sbjct: 900 RYFPETGGVEGVRPEMVDIQGRSKNYLFLEKSPDEQKKFKDSPSFIPKWKQKTGEVSQVQ 959 Query: 446 AKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTF-SLIT 504 +L N D K+ L +L+ N L + Sbjct: 960 NRLGWYYLQLFGDNLPNRDKFVALFKQL-----EQLRLLEKAKNGHQLNWTRLNIIKTQH 1014 Query: 505 DAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDY 564 D + C +I+ GL+ + L + P + Q Y Sbjct: 1015 DWYQCDRCQQIIHVP--GLS-----DVQKSQTKLNIFGC--------PAFKCTGQLQPYY 1059 Query: 565 AEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKM 624 AE + + R+ + + + I +R+ R+ EH+AQ L+ E Sbjct: 1060 AEKIEQVRN---------EHYQQYI---IKNRLPLP---LRSQEHTAQLGVTELERRENR 1104 Query: 625 FKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATI 660 F+ GQ+N+L+CSTT+EMGVD + + R+ + Sbjct: 1105 FRRGQINLLSCSTTLEMGVDIGELQAVVLRNFPPHV 1140 >UniRef50_B4VWS3 Type III restriction enzyme, res subunit family n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VWS3_9CYAN Length = 2104 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 108/698 (15%), Positives = 214/698 (30%), Gaps = 139/698 (19%) Query: 1 MYVNQRQNCD-CGSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEH 59 +Y+N + CD C SPV E+ C+ C + + + +Q + + Sbjct: 543 LYLNSKTTCDDCHSPVLELGSCSQCGQAYTFTQLNNSGELQPLPRATARLRDNPRIYTLT 602 Query: 60 DATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLII------- 112 + + +E+ + S++ TL L ++ IG + +S P + Sbjct: 603 SGNLDSITEEDDIGETE---SEPPSDSPKTLTILAQRDGWIGSPSPESFPPTVTGTGKFH 659 Query: 113 ----------NDIEQVCS-ASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFT 161 N + CG+R + Q R + + ++ ++ E + Sbjct: 660 LAWHRQKGDKNLDGCYLPKCAACGFRSIRA-QAINRFVAYTDEPLEAMIDSLFELLPE-- 716 Query: 162 SDEGKEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRT 221 P+S R+L+TF+D RQ A A Q+ R + L Sbjct: 717 -----SKPSPES--ASKRKLLTFSDGRQDAAFFASDYQRNHTEKLYRQMLYSAL------ 763 Query: 222 QTSTAPNANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKA 281 Q + A + +++ + + +++ + +P + QL Sbjct: 764 QEVKDADGVASVNQVSHKLR------DKFLNISIPH-----PDRNSQLN----------- 801 Query: 282 ATILVSRTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRP 341 L Q + ++ +L REF Sbjct: 802 --------------YLSYVPGDETQERQSKRDCQDR-------AESRAKEILLREFALPF 840 Query: 342 KRTNSLETQGLVQVGYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLD 401 R ++LE+ G++ + LE ++ + FL LD +R + +D Sbjct: 841 ARRSALESFGILA-CHVELEDERLIRSVADRFHISDTEAEIFLIGLLD-IIRRTGIVSID 898 Query: 402 DELKNW-------------IGSRFSSKFVRNPESKDPEDNQNRRWPQI-----RNGNVSH 443 + + I ++ SK E E + + P ++G VS Sbjct: 899 GASQYFPETGGVQGGRREMIDAQGRSKNYLFLEKSADEMKKYKDSPAFMPKWKKDGTVSK 958 Query: 444 RLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLI 503 +L + ++ +L ++L + Sbjct: 959 VQNRLGWYYFQIFGEGFPQKEDFVWLFEQL-----KSFGLLVNAQKGYHLNWNLLNIIET 1013 Query: 504 TDAW-ICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQE 562 W C +I P L + L + TF P + ++ Sbjct: 1014 EQDWHQCDRCQQIFHV------PGLSESLEP-TLNIKGCPTFKCSGQLQP-----YQPEK 1061 Query: 563 DYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYE 622 ++ + + R+ EH+AQ L+ E Sbjct: 1062 IKQAANEHYLQYLIKN--------------------QPPLPLRSQEHTAQLGVGELEKRE 1101 Query: 623 KMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATI 660 F+ GQ+N+L+CSTT+EMGVD + + R+ + Sbjct: 1102 NRFRRGQINLLSCSTTLEMGVDIGELQAVVLRNFPPHV 1139 Score = 49.5 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 9/118 (7%) Query: 737 TRITGVHYTDRYLQNPVALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWM 796 +++ V Y DRYL A L +L+ L+D ++VT+ TL + + Sbjct: 1972 SQVKQVFYRDRYLNGQRA-KFLAELLQG--EGLSDNSQVTILTLETSQSPSASEL----- 2023 Query: 797 SIADFQDFADQWFAAALGRPVELTVFDSPRDIPHHRKLTVTFEDGQVLKIRFDQGMGY 854 A+ + A + V + D PH R+L + D Q K+ FD+G+ + Sbjct: 2024 -KAELEAALIGLKAIEIQPKVTVQPRHRRSDFPHARELEIQGHDQQKYKVIFDRGLDF 2080 >UniRef50_D1BVL7 DEAD/DEAH box helicase domain protein n=1 Tax=Xylanimonas cellulosilytica DSM 15894 RepID=D1BVL7_XYLCX Length = 1525 Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats. Identities = 103/681 (15%), Positives = 197/681 (28%), Gaps = 169/681 (24%) Query: 1 MYVNQRQNCD-CGSPVYEVAFCNDCNEPHLLA---RDKKGKLVQWENKGGD--------E 48 + ++ + C C +PV+E+A C C H+ +D + + + E Sbjct: 449 VTFSRHKECPTCEAPVFEIAACKRCGALHVPGTVEKDGGAERFRPLDGVISRVHWALVGE 508 Query: 49 FSLQDEVPVEHDATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSI 108 ++ D+ E + ++ + L AG + V+ D+ Sbjct: 509 ATVLDDEDDEAHLEDAGGSSRSN-EATLCTDCAAFGPAGAATCYSCASSSVRQVLRTDAG 567 Query: 109 PLIINDIEQVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEG 168 + + CG R RR G + ++ E+ S Sbjct: 568 RELNH-------CQSCGARSSRQV---RRLTSGSDATAAVLASSLYEHLPADPS------ 611 Query: 169 VGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPN 228 PG+GRRL+ F+DSRQ A A +Q R +V + Sbjct: 612 ---VYFPGQGRRLLMFSDSRQQAAFAAPYLQNSYGALVQRAMIVRAIRK----------- 657 Query: 229 ANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSR 288 R ++ + ++A + A L + + AT + I Sbjct: 658 ---------MRGEELAGSDLMMTTLTESNKADIFDPYATALAKRIEIATWIQREMIEGDE 708 Query: 289 TWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLE 348 + L +R + + + L + ++ Sbjct: 709 RTSVEGTGLATVRLMRPRTPPPMPLTRLGLTGDEAWA-------LLDQL---------VQ 752 Query: 349 TQGLVQVGYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWI 408 T + E + + + + +VRE + W+ Sbjct: 753 TLRIQGAVGPVEENVDFTVDALAPRNREV-------------FVREEQS-DAKQSILAWV 798 Query: 409 GSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINT 468 P S+ + + S L ++L A D++ Sbjct: 799 -----------PSSRSTGNRR------------SDYLTRVL----DALGSTADCRDLLTG 831 Query: 469 WLKEAWAQLTGPLAV----LKPD---GNRFYLPKEHMTFSLI---TDAWICPVTNKILDT 518 W LT AV L D G + + + + +S + W C + Sbjct: 832 I----WRFLTTGNAVPWLKLTNDKRRGPVYRVDPDMLRWSSASDDDNVWRCDRCRRFASV 887 Query: 519 AFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHD 578 +G+ P G V+ + Sbjct: 888 NVRGVCP---------------------------------------TNGCRGQLQHVTAE 908 Query: 579 PLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTT 638 P + ++N + G R EH+AQ + + ++ F G++NVL+CSTT Sbjct: 909 PDPSDHYAQNY-------LALAGHPLRAEEHTAQLTGDVASQLQEQFVAGEVNVLSCSTT 961 Query: 639 MEMGVDTDRVMTLASRSQQAT 659 E+GVD + ++ R+ T Sbjct: 962 FELGVDVGELQSVMLRNVPPT 982 >UniRef50_B1L4S0 DEAD/DEAH box helicase domain protein n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L4S0_KORCO Length = 1610 Score = 118 bits (296), Expect = 9e-25, Method: Composition-based stats. Identities = 104/675 (15%), Positives = 207/675 (30%), Gaps = 153/675 (22%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHD 60 +++ +R+ D G PV+E+A C C + +L+ +GKL + + + + D Sbjct: 494 IFLERRELTDDGYPVFELASCRRCGQEYLVGEVVEGKLKHSFAEVDTQRKNRYFMLWGED 553 Query: 61 ATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINN-DSIPLIINDIEQVC 119 ++ E + P I G+ + + + + DS+ +I + Sbjct: 554 IKLKEDEDQEVAVPEEIAKEGDVWKLCVKCGSIWKDKPTCNCDHERDSVRTLIEVTPKDT 613 Query: 120 SASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGR 179 + C G+ R + + + + + E R Sbjct: 614 VLNKCYLCGLRSIDIVREFIFQRDAPAAVLTTALYQNLPRDHARE--------------R 659 Query: 180 RLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAAR 239 +++ F+DSRQ A A ++ +R R +VE + R + + D+ +L + Sbjct: 660 KILIFSDSRQDAAFFAPYLEFTYKRILFRRLIVEAI-KGNRLEDYRLESLCEDVLRLGEK 718 Query: 240 AKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKE 299 +K D AK + + +++ W ++ E Sbjct: 719 SKVF-------------DPAKDEKERKKEV--------------------WKWIIQEFCG 745 Query: 300 RADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQG 359 D R + L +L RP Sbjct: 746 IWDRRNSLEGVG----------------LVSFILIFPENWRP------------------ 771 Query: 360 LEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDE---LKNWIGSRFSSKF 416 ++++ + P W LT D+ R + L+ +R + D + R Sbjct: 772 IKELQEPP--W---NLTEDEARALYQTLLN-SMRFNMAITFPDGLNSQDEFFSPRNREYK 825 Query: 417 VRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQ 476 R S + Q R L KL G + N + L + W Sbjct: 826 FRGEGSDTGRGIYSFIPSQGRTNARLEYLEKLYKKITGKEDEN----NECRELLGKIWED 881 Query: 477 LTGP-----LAVLKPDGNR--FYLPKEHMTFSLITDAW-ICPVTNKILDTAFKGLTPYLP 528 L + + + L + +W IC I+ ++ +G+ P Sbjct: 882 LRDNWVDRGIQRFSNSRDGVLYKLDYRYWRIIQPNTSWFICDRCGVIVPSSVRGVCP--- 938 Query: 529 THISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSEN 588 TF +P + L + Sbjct: 939 --------------TFGCNGNLIP-----------------------IDNQKFEDLERNH 961 Query: 589 ---VWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDT 645 ++T + V+ EH+AQ +++ + ++ F G +N+L+CSTT E+GVD Sbjct: 962 YRYLYTHLEPIVMAPH------EHTAQLTTDHASNIQQKFIRGDINILSCSTTFELGVDI 1015 Query: 646 DRVMTLASRSQQATI 660 + + R+ Sbjct: 1016 GELEAIFLRNVPPEP 1030 >UniRef50_Q2SCB8 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SCB8_HAHCH Length = 1891 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 114/661 (17%), Positives = 204/661 (30%), Gaps = 157/661 (23%) Query: 16 YEVAFCNDCNEPHLLARDKKGKLVQWENKGGDE-----FSLQDEVPVE--HDATEEKVEK 68 Y + C C +P++ KL F L + + E + Sbjct: 443 YPLLTCRQCGQPYIEGYHYNSKLHNRYPSASATAHRRIFWLGEPSSNAIFDEDDEAEQSA 502 Query: 69 ENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCSASGCGYRG 128 E ++ I T L+ R+ + + C+A G Sbjct: 503 EQQWRSLHID--------PLTGNILNEGGVRLFELKTEEDEFDRTHYLTHCAACNATASG 554 Query: 129 MSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSR 188 + + R G + I VLE + ++ P GR+L+TF+D+R Sbjct: 555 SNA-EIISRFYPGNEALSSVITQCVLEALPPQSLNQ---------RPAAGRKLLTFSDNR 604 Query: 189 QGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARAKQAREQAE 248 Q A A ++ A + + +A +E L A + Sbjct: 605 QDAAFFAPYFERTA---------------------NDFAHRSAIVEALRADSAPVPLDT- 642 Query: 249 EYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERADIRGPVL 308 A +A ++ D G + Sbjct: 643 ---------LANKVRALWDKRNCFAY--------------------------PDANGDLR 667 Query: 309 QYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGLEKIHKSPL 368 Y +K + + G EF P R SLE+ GLV++ Y+ EK+ + Sbjct: 668 DYFDDVKDILTGKLGA-----------EFCTPPGRRVSLESLGLVEISYKD-EKLDRVIR 715 Query: 369 HWQEK--GLTLDDWRDFLKVTLDHYVRESNFTQLDD-----ELKNWIGSRFSSKFVRNPE 421 ++ G++ +D R + L+H R T + + W G R++ + E Sbjct: 716 GLLKEFDGISKEDIRSLCLIFLEHIRRSKAITNMPNNPDMNSAAIW-GERYTGIKLF--E 772 Query: 422 SKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPL 481 + W ++R L G+ + +LK W LT Sbjct: 773 YEKSGSEVTHSWTTQLGSTRNNRRTWYLTKQLGWTKERS------QAFLKSMWMLLT-KS 825 Query: 482 AVLKPDGNRFYLPKEHMTFS--LITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLA 539 VL G L + S + C GL + Sbjct: 826 KVLVSSGAGKALDASLILLSDGGKKSLFKC---------NSCGL-----RQRHVVNGKCT 871 Query: 540 QYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVE 599 + +V P+ + +R+ ++ +T+I +VV Sbjct: 872 SFGCTGEVEVCNPKEFSSERNHYIHS------------------------YTEIQSQVV- 906 Query: 600 GGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQAT 659 R+ EH+A S+E + E F + ++NVL+C+TTME+GVD + + + + Sbjct: 907 -----RSREHTASLSTELREFIESEFFDSKINVLSCTTTMEVGVDLGDLEAVVNLNVPPG 961 Query: 660 I 660 I Sbjct: 962 I 962 >UniRef50_B0K504 DEAD/DEAH box helicase domain protein n=9 Tax=Bacteria RepID=B0K504_THEPX Length = 1607 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 116/740 (15%), Positives = 221/740 (29%), Gaps = 176/740 (23%) Query: 15 VYEVAFCNDCNEPHLLAR--DKKGKL---VQWENKGGDEFSLQDEVPVEHD---ATEEKV 66 V+E+A C+ CN +L+ +K GK +E +L+ + +E E Sbjct: 505 VFEIATCSRCNSIYLVGEIKEKDGKKFLYQPGSRYYENEANLEYFLLIEDKGLVPDNEDE 564 Query: 67 EKENSFQPPLII------------AAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIIND 114 + I A +E G D R+ + + L Sbjct: 565 IVLAGGENEFIFKEEEWVLCGKCGAIKPVNELGDLCGCGDEYKIRLIRSSTKNGMLH--- 621 Query: 115 IEQVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSL 174 CG +G RR LLG + + + ++ D ++ +E S Sbjct: 622 -----KCPACGAINTTGTVA-RRFLLGHEAATSVLATALYQHIPDRKEEKVEEEDDEWST 675 Query: 175 PGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLE 234 + T++R R + ++ D Sbjct: 676 ADNNENF-SVTNNR-------------------RMLIF--------------SDSRQDAA 701 Query: 235 KLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMV 294 A + + Q + R M E+ ++ ++V Sbjct: 702 FFATYLQSSYNQILQRRLIIM---------TLERYKEKVIKNEWRV----------EDLV 742 Query: 295 NELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQ 354 ++ + + N + + + K EF+ R TN LE+ GL Sbjct: 743 EY------VKKMLKELNLFPELSLQQLEEEAWKWV----LYEFLGRGGETN-LESLGL-- 789 Query: 355 VGY-QGLEKIHKSPLHWQEKGLTLDDWRD--FLKVTLDHYVRESNFTQLDDE---LKNWI 408 +G+ L + P E + L + + V LD +R++ D + Sbjct: 790 LGFEPILPENWHPPKALTEGYINLTEREATELIMVLLD-TMRKNGAVLFPDSVSLQDEF- 847 Query: 409 GSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINT 468 F K+ ++ W +G + RL ++ L A ++ I Sbjct: 848 ---FKPLNREFYFKKEAKEPNKYSWVPASSGRTNSRLDFMMRLAAAKGQE--VDVEKIKD 902 Query: 469 WLKEAWAQL----TGPLAVLKP----DGNRFYLPKEHMTFSLITDA---WICPVTNKILD 517 +L W +L P +G R L + ++I + + C N++ Sbjct: 903 FLARIWEKLLISDKSPFRRYFSGSPQEGYRLNLRYWRVVPAVIDKSVKWYKCSKCNRLSL 962 Query: 518 TAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSH 577 G+ P E + Sbjct: 963 HNVGGVCPNYRCDGHLEEC---------------------------------------NP 983 Query: 578 DPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCST 637 D + ++ DI +++EH+AQ ++E + +K F G++NVL+CST Sbjct: 984 DDELKDHHYRKLYLDI------LPLTLKSSEHTAQLTTEEAGNIQKKFYEGEINVLSCST 1037 Query: 638 TMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGY----------KTVELNEFI 687 T E+GVD + T+ R+ T + R ++ + F+ Sbjct: 1038 TFELGVDVGELETVFMRNVPPTP--ANYIQRAGRAGRRTSSTAFVLTFAQRRSHDFTHFV 1095 Query: 688 LPAKATNAVERVKDIQIHKQ 707 P N + I+I + Sbjct: 1096 NPLNIVNGKIQTPHIEITNE 1115 >UniRef50_B1I5A5 DEAD/DEAH box helicase domain protein n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I5A5_DESAP Length = 1589 Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 119/673 (17%), Positives = 198/673 (29%), Gaps = 177/673 (26%) Query: 15 VYEVAFCNDCNEPHLLAR-DKKGKLVQWENKGGD----EFS------LQDEVPVEHDATE 63 V+EVA C +C + +L+ R G+ + D E+ L+ VE DA + Sbjct: 508 VFEVALCRECGQHYLVGRIQGDGRRGRLVEAVRDPSHPEYGAVFFRPLETPQSVESDAED 567 Query: 64 EKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCSASG 123 ++ Q + D + V ++ +Q+ S Sbjct: 568 DESAAPQDRQRYALCVQCRAIWLEGLAPLCD-HAEILAVEREEAAREGD---DQIPRCSA 623 Query: 124 CGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLIT 183 CGY+ P R + G T I T+ LP ++++ Sbjct: 624 CGYQ---APDPVREVVHGTDGPHTVIATTL-----------------YQELPSDRKKILA 663 Query: 184 FTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARAKQA 243 F DSRQ A + + + R + L W + L LA Sbjct: 664 FADSRQEAAFFSWYLDR-----TYRDLLTRNLVWQAGSALGWRTREGLSLADLA------ 712 Query: 244 REQAEEYRSWGMPDQ-AKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERAD 302 E RS + A ++ + E E + E ++R Sbjct: 713 DEYYRLLRSRHLAAPYASETELRREA-----------------GIAVCREFLTE-EKRIS 754 Query: 303 IRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRR-PKRTNSLETQGLVQVGYQGLE 361 + G L Y P+ + GP EF+R P + E L+QV + L Sbjct: 755 LEGVGLGYWSLRWPDWY----GP---------MEFLRAGPWTLGAEEALELLQVLFNLLR 801 Query: 362 KIHKSPLHWQEKGLTLDDWRDF-LKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVRNP 420 L L W D LK R + P Sbjct: 802 DQGAVELPLDGPA-GLVTWDDLHLK-------------------------RPQKRVRLGP 835 Query: 421 ESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGP 480 + W R+G V RL K +++ G A + L+ W + Sbjct: 836 PRGEKG---VCSWEGARSGRV--RLLKKILMARGLDNGEAVREAGL--CLQRIWEAVLEY 888 Query: 481 LAVLKPDGNRFYLPKEHMT------------FSLITDAWICPVTNKILDTAFKGLTPYLP 528 R LP + F W C + ++ Sbjct: 889 ERKAPETAYRLLLPAANNAWRLNSAWWRFHVFRPEATLWRCDMCGRV------------- 935 Query: 529 THISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSEN 588 ++A + A M R + Sbjct: 936 -----GRWSVAGLCSRPACPGRM-------------------VRA------------AAG 959 Query: 589 VWTDINDRVVEGGFY---YRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDT 645 TD + R + + R EH+AQ ++ + Y++ FK G++++L+CSTT E+GVD Sbjct: 960 ELTDNHYRYLYQSAFPGRLRVEEHTAQLGRKKAREYQEAFKKGRIHLLSCSTTFELGVDL 1019 Query: 646 DRVMTLASRSQQA 658 + T+ R+ Sbjct: 1020 GDLDTVFLRNTPP 1032 >UniRef50_C6PTC5 Helicase domain protein n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PTC5_9CLOT Length = 678 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 54/285 (18%), Positives = 100/285 (35%), Gaps = 42/285 (14%) Query: 580 LIAQLRSENVWTDINDRVVEGGFYYR------------TAEHSAQQSSERLQSYEKMFKN 627 + + R + T++N+R YYR EH+AQ +S +K F++ Sbjct: 30 ICPEFRCDGELTELNNRQPSKYDYYRKLYSDRRIVPMIAKEHTAQLTSTAASELQKKFES 89 Query: 628 GQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIP--------GPEWHLNDELVVRSLGYK 679 G++NVL+CSTT EMGVD ++ + R+ + + + Sbjct: 90 GKVNVLSCSTTFEMGVDVGQLEAIFMRNVPPETANYIQRAGRAGRRGSSTAFALTFARRR 149 Query: 680 TVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRI 739 + +LN + P K + + I++ + + F H E + I Sbjct: 150 SHDLNYYSNPTKIIHGAIQPPYIEVKNE-KIVKRHMYSVIFAYFFRHHPELFKNTEDLFI 208 Query: 740 TGVHYTDRYLQNPVALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIA 799 D Y A + +L +L + + + +K +W I Sbjct: 209 EN---EDMY-----ATKEVRELLESYPKELITSLKNIVPSSLHEK-----LGLDNWSFID 255 Query: 800 DFQDFADQWFAAALGRPVELTVFDSPRDIPHHRKLTVTFEDGQVL 844 + R VE+ D+ ++ +R FE GQ + Sbjct: 256 ELCGEEGSL------RKVEIEYRDNLEEL--NRIKQEKFEKGQNI 292 >UniRef50_A9B5T9 Helicase superfamily 1 and 2 ATP-binding n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B5T9_HERA2 Length = 1784 Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 110/707 (15%), Positives = 210/707 (29%), Gaps = 148/707 (20%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLA--RDKKGKLVQWENKGGDEFSLQDEV--- 55 +Y C CGS V E+ C C L D + + E + D Sbjct: 558 LYATPTIWCGCGSRVLELMSCRVCGLAFLGGIPEDPHEQRLWPYPNDDLERIVADSRGYQ 617 Query: 56 --PVEHDATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIIN 113 +E+ +++ + + + ++G E + + QT I +S+ L Sbjct: 618 VFALENPNPDKQPQADWQLNYRSVKSSGLCRETDADARMVWEQTETIKQKKTESMRLPRA 677 Query: 114 DIEQVCSASGCGYRGMSGKQP-FRRALLGGPFYV-------TNIVPT-VLEYCQDFTSDE 164 + + P F L+ F + + +PT ++E F + Sbjct: 678 CPRCIYPSDRGVAEAFRTLTPQFFAVLMEHAFRIQPPRDQKSQSIPTPIVENKWSFRRVQ 737 Query: 165 GKEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTS 224 S P RGR+L+TF+D RQ AR+ + + R R V+++L Q T Sbjct: 738 PTVVTSTQSNPNRGRKLLTFSDGRQTAARLVGTLNFQRTRDLFRQIVMKLLDQQQLT--- 794 Query: 225 TAPNANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATI 284 PDQ E + + Sbjct: 795 ------------------------------NPDQPYALTNLREAILN-FCIDHAIDPTFG 823 Query: 285 LVSRTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRT 344 W + +E + PVL +L++ R Sbjct: 824 EKDGFWNTLQQNREEAKRLARPVLDDY------------FRRELAD------------RQ 859 Query: 345 NSLETQGLVQVGYQGLEKIHKSPLHWQEKGLTL-----DDWRDFLKVTLDHYVRESNFTQ 399 +E GL + +E G TL + + + + E+ Sbjct: 860 IGVEALGLAR-WVPLDSAEKDIRQDIRESGSTLTGFDTEQTIGIITSIVRILLGENMILP 918 Query: 400 LDDELKNWIGSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVN 459 + ++W + R ++ + + G +R+ + L A + N Sbjct: 919 ASADPRDWDQALIEYWERRTVVNQGALKSPQTLF--WNAGENDNRITRYLR--AVIASSN 974 Query: 460 AATIDIINTWLKEAWAQLTGPLAVLKPDGN----RFYLP-KEHMTFSLITDAWICPVTNK 514 ++ + E W LTG + +L+P F + L T + C Sbjct: 975 QTAGITLSQLMHELWDALTG-MGILRPVQGVTQPGFAISIASLGLLLLTTTMYQCRACR- 1032 Query: 515 ILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDW 574 YL F Q + +++ + +Y Sbjct: 1033 -----------YLSAESIFGVCLRCQNTMDEC------TLTDVEQQEGNY---------- 1065 Query: 575 VSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKN------- 627 + L+ R++ + F EH+AQ S ++ E+ FK+ Sbjct: 1066 --YRKLVDYARNQ-------SSMFADPFPLHVMEHTAQISRKQASDRERHFKDQFIPLYT 1116 Query: 628 --------------GQLNVLNCSTTMEMGVDTDRVMTLASRSQQATI 660 ++++L+ +TTMEMG+D + + + T+ Sbjct: 1117 PSGAVNDRGEHPQAHRVDMLSVTTTMEMGIDIGDLTVVGLHNMPPTV 1163 >UniRef50_UPI0001C373E9 helicase n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C373E9 Length = 1588 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 62/336 (18%), Positives = 111/336 (33%), Gaps = 87/336 (25%) Query: 345 NSLETQGLVQVGYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRES-----NFTQ 399 NSLE G++ Y+ K+ P+ + T+ + V D + R+ T Sbjct: 764 NSLEKLGIISFRYK--HKLGDLPVFPNGETNTVIE------VLADGFRRKRAIKYETITD 815 Query: 400 LDDELKNWIGSRFSSK-FVRNPESKDPEDNQNRR--WPQIRNGNVSHRLAKLLMLGAGFK 456 L D+ K + +FSS P ++ + + R W R + + KL G Sbjct: 816 LSDDDKEFF--QFSSAVQTIAPSKENQSEKFSSRSTWTSDRENICINYMTKLTEKMNG-- 871 Query: 457 TVNAATIDIINTWLKEAW-AQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKI 515 +IN +L + W ++ D + ++ Sbjct: 872 --TPWDRGVINDFLLQLWENVFVRNESIETYDNVGY----------------------RM 907 Query: 516 LDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWV 575 L F + Y L + ++T Sbjct: 908 LIDEFMVYSVY--------SDDLETFVCSKCGRITAK----------------------- 936 Query: 576 SHDPLIAQLRSENVWTDINDRVVEGGFYYRT-----------AEHSAQQSSERLQSYEKM 624 + D + + R + + +E Y+R EH+AQ E+ + Y+ Sbjct: 937 NADGVCPEFRCKGTLMPFDRSALEKNHYFRVYNELDISDLIVKEHTAQLDIEKAKEYQDK 996 Query: 625 FKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATI 660 F N +NVL+CSTT EMGVD + T+ ++ + Sbjct: 997 FVNKAINVLSCSTTFEMGVDVGDLETVFMKNMPPSP 1032 >UniRef50_A0QRV7 DEAD/DEAH box helicase n=2 Tax=Actinomycetales RepID=A0QRV7_MYCS2 Length = 1667 Score = 99.6 bits (246), Expect = 6e-19, Method: Composition-based stats. Identities = 110/736 (14%), Positives = 212/736 (28%), Gaps = 172/736 (23%) Query: 1 MYVNQRQNC-DCGSPVYEVAFCNDCNEPHLLAR--DKKGKLVQWENKGGDE---FSLQDE 54 +++ + C DC +P +E+ C C H+ + G L K G F L D Sbjct: 467 VHLARHLICPDCDAPAFEIGSCKRCGAVHIYGTPTQENGSLYLRPRKAGGRGTWFVLGDH 526 Query: 55 VPVEHDATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIIND 114 + + V+ + RL +G + + Sbjct: 527 DGLTDEDEAAAVDDGDEVSGD--------------GARLCTYCGALGDDDAST------- 565 Query: 115 IEQVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSL 174 C + + R G+E G Sbjct: 566 ------CGACASSELRPVRKLR--------------------------QRGEEIAGCLVC 593 Query: 175 PGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLE 234 RG GT RM +A + + ++ + + + +T P L Sbjct: 594 GARGA----------GTVRM-FETGPDATGAVITTALYQKIPPANDSHGATTPGEGRKLL 642 Query: 235 KLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMV 294 + ++QA Y + S+ Q +L A + ++V Sbjct: 643 AF-SDSRQAAAYFAPY------LEESYSRLQRRRLISQGMLAAHADEEPAGIE----DIV 691 Query: 295 NELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQ 354 + + +A V + + + P ++E+L + R SLE GLV Sbjct: 692 FKTRSKAA---GVKHFPGRMTAQQQTRVVAPWVMAEVLATDD------RQ-SLEGLGLVS 741 Query: 355 VGYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDEL---KNWIGSR 411 + E ++P + GLT + FL+ + +R+ + +++ R Sbjct: 742 ISLHR-ESRWQAPRPLLDIGLTDVEAWAFLQELVR-TLRQQGAVTMPEDVPPNDQIFAPR 799 Query: 412 FSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLK 471 +R S + W R N + ++ + LK Sbjct: 800 LG--PIRARLSGPESIRKVLSWLPGRGTNRRVDYTRRVLQALQCEVDA-------EQLLK 850 Query: 472 EAWAQLTG--------PLAVLKPDGNRFYLPKEHMTFSLITD---AWICPVTNKILDTAF 520 W L + G + + E + ++D + C + + + Sbjct: 851 GVWEFLVRRETPVDWLKSSTESGLGQVYQVDHECLRLRWVSDEWPVYQCRICRRTAPFSV 910 Query: 521 KGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPL 580 +G+ P L + +P LDR ++ Y Sbjct: 911 RGVCPAL--------------GCDGVLERFVP--PPLDRDRDHYRALY------------ 942 Query: 581 IAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTME 640 R++ EH+AQ + + + F G++N L+CSTT E Sbjct: 943 ---------------RMMNAVP-LTVKEHTAQWVTTEAAAIQHEFVRGEVNTLSCSTTFE 986 Query: 641 MGVDTDRVMTLASRSQQATIPGPEWHLNDE----------LVVRSLGYKTVELNEFILPA 690 +GVD + + R+ + + LVV K+ +L F P Sbjct: 987 LGVDVGELQAVMLRNMPPST--ANYLQRAGRAGRRSGAAALVVTYATRKSHDLTRFNEPE 1044 Query: 691 KATNAVERVKDIQIHK 706 + R + + Sbjct: 1045 VMMSGQVRAPYVPLTN 1060 >UniRef50_Q07PM3 DEAD/DEAH box helicase domain protein n=1 Tax=Rhodopseudomonas palustris BisA53 RepID=Q07PM3_RHOP5 Length = 2056 Score = 98.8 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 125/688 (18%), Positives = 209/688 (30%), Gaps = 157/688 (22%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHD 60 +Y RQNC CGS VYE+ C C + A V E QD Sbjct: 657 LYAEPRQNCPCGSQVYELHSCRSCGLSVVRASVGAPAGV--------EHLWQDNGRAYGG 708 Query: 61 ATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRI---GVINNDSIPLIINDIEQ 117 T F+ P+ AG LD T RI G + + Sbjct: 709 DTGLIEPIHICFEDPMPQTAGTV-----RAAYLDLATGRIDGAGSFTREVWLPPQLGSKL 763 Query: 118 VCSASGCGY----RGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDS 173 + CG +G + PF + VLE Sbjct: 764 FDACPRCGAASGPTSSNGISDLQT-KGDQPFQELISI-QVLEQAPRPQIKT--------- 812 Query: 174 LPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADL 233 P +GR+ + F+D RQ +R+A ++ + R LR ++ + Q P+ + Sbjct: 813 -PLQGRKALVFSDGRQTASRLAGTLKTFSFRDSLRPLLLSGI--KALRQPVFKPSLDDAP 869 Query: 234 EKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEM 293 +A A + + + ++ Q A G + Sbjct: 870 LAIALGAARHQVRLRPAGDD---------DGHMDRAGQHVLALVGNPDVE-------NDD 913 Query: 294 VNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLV 353 L R R PV + + +++ G L+ +L RPK L Sbjct: 914 YRTLSNRTSERTPVSVFKSI-YAVLQDDHTGLFPLALAML------RPK---------LT 957 Query: 354 QVGYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSR-F 412 + L +I K P GL+ D R +D ++ W R Sbjct: 958 KTEANKLAEILKLPPI---DGLSQDQVRS---AFIDLWL--------------WQAMRKH 997 Query: 413 SSKFVRNPES--KDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWL 470 + K PE+ + R W NG S +A +L + N ++ Sbjct: 998 AIKLQHTPENVVGAGGSSGIREW----NGRFSKNVAAILE-------ARGLKQWLKNDFV 1046 Query: 471 KEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDA-WI-CPVTNKILDTAFKGLTPYLP 528 K + G A +YL ++ + A WI C Sbjct: 1047 KVCEPAMRGVFA--PGATGTYYLQAAKLSLDVDEKAEWIRCERC---------------- 1088 Query: 529 THISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSEN 588 T +S + L + K ++D S + + Sbjct: 1089 TSVSPRNPLLGDSCGYCTGKAK-----QIDPSNDAVFRSRKAFYRRL------------- 1130 Query: 589 VWTDINDRVVEGGFY-YRTAEHSAQQ-------SSERLQSYEKMFKN----------GQL 630 W ++D+ + EHSA + R ++YE F++ + Sbjct: 1131 -WERLSDKDDAYAPHQLIAEEHSAALNDSGLANAMSRNEAYELRFQDIPIDQDGQPGSPI 1189 Query: 631 NVLNCSTTMEMGVDTDRVMTLASRSQQA 658 ++L+C+TTME+G+D + +A R+ Sbjct: 1190 DILSCTTTMEVGIDIGGLTAVALRNVPP 1217 >UniRef50_Q0AZK9 Helicase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AZK9_SYNWW Length = 1578 Score = 98.4 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 63/400 (15%), Positives = 122/400 (30%), Gaps = 70/400 (17%) Query: 266 AEQLEQAYQAATGGKAATILVSRTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGP 325 A + L++R + + + V + Sbjct: 661 AAFFASYLETTYRDNLVKRLMTRVCEDNAQAMASGISLENFVDHLEAIMAEYRIYAQDNR 720 Query: 326 LKLSEMLLFREFMRRPKRTNSLETQGL----VQVGYQGLEKIHKSPLHWQEKGLTLDDWR 381 K + + + +E + K NSL+ +G+ V + K++ L+ + Sbjct: 721 HKEAWIAVAKETINY-KAKNSLQNKGILFFDVDIDMPANNKLN----------LSAHETT 769 Query: 382 DFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFV-RNPESKDPEDNQNRRWPQIRNGN 440 D K+ ++++ + + L R + + + + + W + Sbjct: 770 DLFKIFARYFIK-NAAIKFPISLTRADDQRLTFNGITIGFDLSSSSKSYIQAW--VPAAG 826 Query: 441 VSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTF 500 + KLL K I L+ W L + D +F L + Sbjct: 827 RENIRTKLLQ-----KIFPDKDAAFIYKLLESLWYALNTKGIISYYD-EKFMLSSSAIKV 880 Query: 501 SLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRS 560 + + C K +TPY +I TF +K Sbjct: 881 KAVQVLYKCNEC--------KTITPYNIQNICPNPKCTGDLQTFDFKK------------ 920 Query: 561 QEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQS 620 + ++ + + EH+AQ SE+ + Sbjct: 921 ----------------------TIHRDHYYNVFRN---LKIDDLIAKEHTAQLGSEKAYT 955 Query: 621 YEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATI 660 Y+ FKN ++NVL+CSTT EMGVD + T+ R+ + Sbjct: 956 YQNDFKNEKINVLSCSTTFEMGVDVGSLETVFMRNMPPSP 995 Score = 56.8 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 81/265 (30%), Gaps = 30/265 (11%) Query: 10 DCGSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHDATEEKVEKE 69 DCG YE++FC++CN ++ + + G LVQ D EV + E E Sbjct: 475 DCGYKAYEISFCHNCNALFIIGQKEDGHLVQKNKFNAD---YDPEVYLLDGDYEGDDNDE 531 Query: 70 NSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQ----VCSASGCG 125 + I+ A + G + G + LI + C Sbjct: 532 DEEAKSYIVCA----KCGAIKRSTSIDDLTCGHGKENYNRLIKVKDKGTKLHTCPCC--- 584 Query: 126 YRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRG------- 178 + + + R LG I + + + D Sbjct: 585 HTINTQRSIMRPYFLGNEASTAVIATALYNELPNTKITKETVKFEDDFFGESSKKIIEKR 644 Query: 179 ----RRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLE 234 ++ +TF+D+RQ A A ++ R ++V+ L + A + LE Sbjct: 645 EHIVKQFLTFSDNRQAAAFFASYLET-----TYRDNLVKRLMTRVCEDNAQAMASGISLE 699 Query: 235 KLAARAKQAREQAEEYRSWGMPDQA 259 + + Y +A Sbjct: 700 NFVDHLEAIMAEYRIYAQDNRHKEA 724 >UniRef50_A1UB29 DEAD/DEAH box helicase domain protein n=2 Tax=Mycobacterium RepID=A1UB29_MYCSK Length = 1543 Score = 97.3 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 102/663 (15%), Positives = 203/663 (30%), Gaps = 151/663 (22%) Query: 12 GSPVYEVAFCNDCNEPHLLAR-DKKGKLVQWENKGGDEFSLQDEVPVEHDATEEKVEKEN 70 G V+E C C HL + + + + + S+ V + D E E Sbjct: 469 GRAVFEFGTCTRCGAVHLAGELEHRDRREYFTPSKKADASVNWLVLADGDLDVVVDEDEA 528 Query: 71 SFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCSASGCGYRGMS 130 + + + + A T +RL ++ + A+ C Sbjct: 529 T-----LASDEPKNLADPTTRRLCTGCGQLTAAD----------------AARCATTNCR 567 Query: 131 GKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQG 190 Q ++ T + T SRQG Sbjct: 568 AGQML-----------------LVREHPRPTRIMSRCTECG-------------TQSRQG 597 Query: 191 TARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARAKQAREQAEEY 250 R +R A + + ++ + L P A+ D ++ ++ Sbjct: 598 IRR--LRTDVNAAPAVVTTALYQQL-----------PEASGDAADNVGGGRKLLMFSDSR 644 Query: 251 RSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERADIRGPVLQY 310 ++ L + + LE+ Y T ++ +L Sbjct: 645 QAAAF-AAPYLDRTYSRMLERRYITEALRDPVAATSELTVGDL------------AILAR 691 Query: 311 NHYLKPEVFNENGGPLKLSEML---LFREFMRRPKRTNSLETQGLVQVGYQGLEKIHKSP 367 F+ G +++++ + + E M R SLE GL++V L + P Sbjct: 692 EKAQAAGHFDRRLGSIEIAQAVNQWISGELMTLETRQ-SLEGLGLMRV---ALRREPSVP 747 Query: 368 LH-WQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKF--VRNPESKD 424 L + GLT ++ + + VR + D + RF+ + VR + Sbjct: 748 LRGFTSLGLTEEEAWALMNELVK-TVRLQGAITVLDRVDI-KDERFAPRNTRVRMRSAGS 805 Query: 425 PEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQL-TGPLAV 483 Q W G + R+ L + + + + L+ W L +G V Sbjct: 806 DRARQVISWNPSGTGTTNGRITLLRKVF-----ESLSNKTPVEKVLEGCWRLLESGGFLV 860 Query: 484 LKPD---GNRFYLPKEHMTFSLITDA-----WICPVTNKILDTAFKGLTPYLPTHISFEH 535 + D G + L +T +T+ + C + + + + P Sbjct: 861 AESDRVLGQVYQLDHSMLT---VTNGANCEWYRCDTCRLLTAFSIRDVCP---------- 907 Query: 536 LTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDIND 595 ++ ++ + E+ A R N + + Sbjct: 908 ------NSRCTGRLRLYEVP--------------------------ASGRDSNHYRVVYQ 935 Query: 596 RVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRS 655 + R EH+AQ ++ + ++ F G++NVL+CSTT E+GVD + ++ R+ Sbjct: 936 TMTSAP--LRAHEHTAQWDAKTAANIQREFITGRVNVLSCSTTFELGVDVGDLQSVVMRN 993 Query: 656 QQA 658 Sbjct: 994 MPP 996 >UniRef50_UPI0001AF474B DEAD/DEAH box helicase domain-containing protein n=1 Tax=Mycobacterium kansasii ATCC 12478 RepID=UPI0001AF474B Length = 1713 Score = 91.9 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 115/722 (15%), Positives = 218/722 (30%), Gaps = 143/722 (19%) Query: 12 GSPVYEVAFCNDCNEPHLLARDKKGKLV---QWENKGGDEFS-----LQDEVPVEHDATE 63 G P++ +AFC +C + L+ +G+ + + G DE L D T+ Sbjct: 441 GQPLFPLAFCRECGQEFLVVNLDRGRKSFSPRILHSGIDEQPDATGLLYVTDQPWPDPTD 500 Query: 64 EKVEKENSFQPPLIIAAGETSEAGYTLQR-LDRQTRRIGVINNDSIPLIINDIEQVCSAS 122 + + + AG+ + + + + G I +D +P+ + C + Sbjct: 501 PALLELVPDDWAVSAGAGQALDPARLNKLPVSLRVDPFGSITDDGMPVAFFERLDFCPSC 560 Query: 123 GCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLI 182 Y + R A LG TVL + + L R+ + Sbjct: 561 KTSYESARQSEFSRVASLGTE--GRASAVTVLSQSVVRALRDETD------LDAEARKFL 612 Query: 183 TFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARAKQ 242 F+D+RQ + A + +R ++ H + + L + Sbjct: 613 AFSDNRQDASLQAGHFNDFVIVALIRSALYRAAVNHGDGPLTDENLGPEVVSALGGNKLK 672 Query: 243 AREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERAD 302 + E+ +P +++ +A + ++ R W ++ Sbjct: 673 RFARDEDTADELVP---------RKKIARALR--------DVVTYRLWRDL--------- 706 Query: 303 IRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGLEK 362 + P +LE G +++ Y GL++ Sbjct: 707 -----ARGWRITMP-----------------------------NLEQTGQLRLDYFGLDQ 732 Query: 363 IHKSPLHWQEKGLTLDDW-----RDFLKVTLDHYVRESNFTQLD-DELKNWIGSRFSSKF 416 + W G L D R + V LD +R + + + + + R +S+ Sbjct: 733 LADDDTKWATLGNPLADADSKIRRQLMHVLLD-ELRRNLCIETEFLSEEKFDAIRRASRE 791 Query: 417 -VRNPESKDPEDNQN--RRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEA 473 +++P + E +P R +V+ L + G G A WL+ Sbjct: 792 WLKDPWAITDESGTYSGTAYPGSRPKSVAGTGVDLYLSGLG-----AYGR-----WLRR- 840 Query: 474 WAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISF 533 RF + + + DA DT +GL + + Sbjct: 841 --------------PGRFPAHAQKLKVA---DA----------DTLIEGLLETMASAGIL 873 Query: 534 EHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDI 593 + + + T ++ E W Q + + R +P QL SE Sbjct: 874 VRVKMPKRRTGYRIHASLIE-WHAGTGQHRAPDPIRGNRTQGRVNPYFRQLYSE------ 926 Query: 594 NDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLAS 653 + EH+AQ + Q E F N QL VL CS TME+GVD + + Sbjct: 927 ---TAQALVGLEAREHTAQVEPSKRQQREDEFSNAQLPVLYCSPTMELGVDIRSLNVVGM 983 Query: 654 RSQQATIP--------GPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIH 705 R+ T + + F +++ Sbjct: 984 RNVPPTPANYAQRSGRAGRSGQPAIALTYCATGNAHDAYYFRRSQDMVAGAVAPPRLELG 1043 Query: 706 KQ 707 Q Sbjct: 1044 NQ 1045 >UniRef50_Q3IPC2 Predicted helicase n=3 Tax=Halobacteriaceae RepID=Q3IPC2_NATPD Length = 1767 Score = 90.0 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 101/665 (15%), Positives = 185/665 (27%), Gaps = 130/665 (19%) Query: 16 YEVAFCNDCN-EPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHDATEE-----KVEKE 69 Y ++FC C E + D++ + Q +L V E D E ++E Sbjct: 512 YPLSFCRGCGQEYYTTVVDQEKNVTQG--------ALSTFVDTEEDEEEAYLMRGDWDRE 563 Query: 70 NSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCSASGCGYRGM 129 + P + Y T + +E C A+ Sbjct: 564 TAPLPDEWLNDNGQLRDTYVEAEPRPATYCPECDQLTPGRVEQGQLECGCFAAQGVEVMR 623 Query: 130 SGKQPFRRALLGGPFY--VTNIVPTVLEY--CQDFTSDEGKEGVGPDSLPGRGRRLITFT 185 + G + V N + + T+ + G +LP ++ I F+ Sbjct: 624 VNQPFLFCPNCGVHYTRRVKNEFNKLFTFGTVGRSTATDVLIGNTMRNLPDDQQKTIAFS 683 Query: 186 DSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADL----EKLAARAK 241 D+RQ TA A + +R R R S+ L+ +T N DL E L Sbjct: 684 DNRQDTALQAAHLNNLYQRVRFRRSLYHTLAEGDDVSLTTLGNDVFDLLDDEEALPPAID 743 Query: 242 QAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERA 301 D + EQ + I V E +++L + Sbjct: 744 TGMFGPSAEDRQNYSDYLLFNTILELGREQQRTQQSLEDVGLIDVEY---ENLDKLADVD 800 Query: 302 DIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGLE 361 D+ + ++ + + L + RR Sbjct: 801 DVWDSIPVLSNA-------DPTVREEYVHGFL--DIFRR--------------------- 830 Query: 362 KIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVRNPE 421 + + +F D + + QLD+E+ ++ G F + V + Sbjct: 831 ----------SIAIDHESTTNF----TDF--KRNVINQLDEEV-HFHGQEFFNFPVGYSD 873 Query: 422 SKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWL-----KEAWAQ 476 + R R + R + T A IIN+ + E Sbjct: 874 TASTSGRHRVR----RLTHPRSRHVRWTARALDVDTDTA--KAIINSVIDLISDDEVLKL 927 Query: 477 LTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHL 536 LT +T + D +CP TP T + Sbjct: 928 LTQESLKYTGKVYMLNHSAIRVTHADPEDVRVCPKCG----------TP--TTRDELDVC 975 Query: 537 TLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDR 596 D+ ++ + + D E + + + Sbjct: 976 LNYSCDSITPEETDLESSYFYDLYTESFDDAVDII------------------------- 1010 Query: 597 VVEGGFYYRTAEHSAQQSSERLQSYEKMFKNG-QLNVLNCSTTMEMGVDTDRVMTLASRS 655 EHS Q +E+ + E F+ G ++N + + TME+G+D + + R+ Sbjct: 1011 ---------AGEHSGQVENEKRKQLESDFREGEKVNTIVSTPTMELGIDIGDLSNVYMRN 1061 Query: 656 QQATI 660 Sbjct: 1062 VPPNP 1066 >UniRef50_A6G8L6 DEAD/DEAH box helicase domain protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G8L6_9DELT Length = 2132 Score = 89.6 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 115/729 (15%), Positives = 205/729 (28%), Gaps = 129/729 (17%) Query: 3 VNQRQNCDCGSPVYEVAFCNDCNEPHLLARDKKGKLVQW-----ENKGGDEFS-LQDEVP 56 + C CG+ VYE+ C DC L K +L W GD L V Sbjct: 605 FDPGPRCRCGARVYELYTCRDCGATFLRGYVKGYELDAWSLLWSSPAEGDGLRPLDLLVE 664 Query: 57 VEHDATEEKVEKENSFQPPLI-IAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDI 115 E +E F P I+A ++ R + V N Sbjct: 665 ENAVHDEAADVREARFDPLRGRISAASDDKSA-------GSLREVVVPANPGASADAGFW 717 Query: 116 EQVCSASGCGYRGMSGKQPFRRALL-GGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSL 174 S + G + P G ++ I + +E E L Sbjct: 718 ACPVCMSAERHGGTRQRSPVTPHRTQGAQPFLNLIQAQLAAQPAKPPKEEETEEARARRL 777 Query: 175 ---PGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSV----------VEILSWHQRT 221 P GR+ + F+DSR+ A ++++ + A + +R + E L Sbjct: 778 RIAPLEGRKALAFSDSRRAAAELSIQANEFALKDAVRPMLLVGWRMLSEAYEELCAETAR 837 Query: 222 QTSTAPNANADLEK-------LAARAKQAREQAEEYRSWGMPDQAKLSQAQA-EQLEQAY 273 + A+ + AA A + +PD Q ++ A Sbjct: 838 RNEVLLKADLQPVEDPKPLDLTAAGQAALLGAARLSQRLRVPDIGAADSEQLYAAMKVAE 897 Query: 274 QAATGGKAATILVSRTWTEMVNELKER--ADIRGPVLQYNHYLKPEVFNENGGPLKLSEM 331 + A + A + W ++ E ER D + +G ++ Sbjct: 898 RLANMMRQAKDVRPPKWATLLKEFAERRPPDPSEDPADVGAPAVVRDWVLSGLSGAMAPR 957 Query: 332 LLFREFMRRPKRTNSLETQGLVQVGYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHY 391 L KR L L V + + Q G+ L V L Sbjct: 958 LGGGTGRAASKRAMDLWGLALASVR-PTRGGLSSARAKIQSAGV--------LPVGL--- 1005 Query: 392 VRESNFTQ-LDDELKN-WIGSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLL 449 + L W+G + V E+ + + ++ P+ + + R + Sbjct: 1006 ISSDLLLDHLCGRWLRLWLG-----RGVLLSEAVEAGVDFPKQVPKRLDAKHAERWKGAM 1060 Query: 450 MLGAGFKTV--NAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAW 507 K N ++ + +L G + L+ D N + Sbjct: 1061 NEALNLKDKDTNKLHRALLEAFCDAE-RRLLGRVLTLEVDCNLAHWRG------------ 1107 Query: 508 ICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQY--DTFVAQKVTMPEIWKLD-RSQEDY 564 + +G+ P +P Q+ + + + + D + + Sbjct: 1108 ----CRRC-----RGVQPVVPQAAVLALGDDGQWLLECERCRDEDTACLAEPDVVAWFEA 1158 Query: 565 AEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKM 624 +AR + D L + V EH+AQ L E + Sbjct: 1159 RRTHYRARAAEALDGLQENVSKAG-------EQVVLPALPLAGEHTAQLG--ELDR-EAL 1208 Query: 625 FKNGQLN-----------------------------------VLNCSTTMEMGVDTDRVM 649 F ++N +L+ +TTME+G+D V Sbjct: 1209 FNTAEINELRFQDVDLGPVGKAKKNTDGEYSIEGRKESDAFDLLSSTTTMEVGIDLGAVS 1268 Query: 650 TLASRSQQA 658 +A R+ Sbjct: 1269 AVALRNMPP 1277 >UniRef50_Q0B058 Putative helicase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0B058_SYNWW Length = 1878 Score = 89.2 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 106/696 (15%), Positives = 218/696 (31%), Gaps = 98/696 (14%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHD 60 ++ R C CG V ++ C C E L ++ + N E D+ +E Sbjct: 567 LHFRHRLTCTCGGRVLDLIVCEVCGEVFL----GGYRVSRKINSTRFEILTSDQPDLEKM 622 Query: 61 ATEEKV----EKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIE 116 + V EK F P + + Y + + + + G +N S L ++ Sbjct: 623 PDQTSVLKTYEKYAVFWPIQKGTEVKPEDEQYQVNNI-VRRWKAGRLNVFSGVLRQDNKA 681 Query: 117 QVCSASG------CGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGK---- 166 + G G P + G + + + + F Sbjct: 682 PDDNEVGGWIYVIGGDNPNEPSLPTKCPRCGADYRSKMVSSPLRNHRTGFQKACQVLASA 741 Query: 167 --EGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTS 224 + P + R+L+ F+DSRQ +A++A M+Q+ R +R ++++ +S + + Sbjct: 742 LFREMNPFTDNQSFRKLVVFSDSRQDSAKLAAGMEQDHFRDMIRLALLQAISKYWMEFAA 801 Query: 225 TAPNANADLEKLAARAKQAREQAEE--YRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAA 282 + ++A + ++ + D+ + Q ++ + Sbjct: 802 FWRTTVKVMPQVAHKIQEINPELYSTVIEPQKTEDEVHRYRFQKSHIQMMSEIMNWSLGM 861 Query: 283 TILVSRTWTEMVNELKERADIRGPVLQYNHYLK---PEVFNENGGPLKLSEMLLFREFMR 339 + M+ +K + P+ + ++ + GG +E R Sbjct: 862 NPTNLDVYNTMLKMIKFYPG-KVPLFELRGVIREIMLGLGMNPGGNEYRVNTYYVQEGGR 920 Query: 340 -RPK------RTNSLETQGLVQVGYQGLEKIHKSPLHWQEKGLTLDDWR---DFLKVTLD 389 +P NS E Q EK P + L L D + + V Sbjct: 921 GKPHAWHECYNWNSSEAQ----------EKAQLVPEA--RRLLGLMDNCLAEEVMHVLFP 968 Query: 390 HYVRESNFTQLDDELKNWIGSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLL 449 H R F L + + ++ + + R+ + + G + KL Sbjct: 969 HVAR--TFEGLGQGWVTYEETTNATDLIIQATNSAIRLLGGRKTHRYQRGYKAGSETKLP 1026 Query: 450 MLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHM-TFSLITDAWI 508 + + +V + + T + + G L+ L D + YL H W Sbjct: 1027 RYVSNYLSVIGVSAAEVETEMVHS-KAGMGGLSSLGLDPDYLYLNLSHFDHEETRPQGWR 1085 Query: 509 CPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGL 568 C N G P + L + + + + + SQ A + Sbjct: 1086 CVTCNAFYLQPAGGFCPECASQRQSHRLVPSNPQSHL-------DYYLYLASQSGPAFRM 1138 Query: 569 AKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNG 628 +L + TD DR+ R + ++ +F Sbjct: 1139 H-----------CEELTGQ---TDYIDRI------------------RRQRWFQDVFVED 1166 Query: 629 QL------NVLNCSTTMEMGVDTDRVMTLASRSQQA 658 ++ ++L+ +TTME GVD ++ + + Sbjct: 1167 EIPLVHGVDLLSVTTTMEAGVDIGPLLAVMMANMPP 1202 >UniRef50_B5J454 DEAD/DEAH box helicase domain protein n=1 Tax=Octadecabacter antarcticus 307 RepID=B5J454_9RHOB Length = 1653 Score = 87.6 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 74/393 (18%), Positives = 125/393 (31%), Gaps = 68/393 (17%) Query: 304 RGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGLEKI 363 + Y ++P L+L + L+ E K SLE GL+ V Y+ ++++ Sbjct: 713 SDGLRLYRPGVEPAREKGENLRLRL-KALIAAELTVFGKGRLSLEGFGLIGVDYKNIDRL 771 Query: 364 HKSPL---HWQEKGLTLDDWRDFLKVTLDH---YVRESNFTQLDDE--LKNWIGSRFSSK 415 + K R LK+ +H S L+DE R + Sbjct: 772 TNGVAGEMPVELKLYAQPFCRHVLKLMREHRALAWEASGMIDLEDESIWTRMANQRNRAM 831 Query: 416 FVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWA 475 + +P + + I GN ++R LL A K V A + I L + W Sbjct: 832 TL------EPNTRSSLAFSLIPAGNRANRFTTLLRKMANAKRV-AIDENQIRDILSKFWK 884 Query: 476 QLTGPLAVLKPDGNRFYLPKEHMTFSLI---TDAWICPVT--NKILDTAFKGLTPYLPTH 530 + P + G L + + C DTA G+ P + Sbjct: 885 IIEHPRMMTAKHGVGRGLKLDDDFLVRPGSEVSLYQCKKCGGRTQFDTA--GVCPSMGCK 942 Query: 531 ISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVW 590 + + + AQL +N + Sbjct: 943 GNLIEIDATER----------------------------------------AQLAKKNHY 962 Query: 591 TDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMT 650 R E EH+A + + E+ FK G+ N+L+C+TTMEMGVD + Sbjct: 963 VV---RYHERPLMGIAREHTAAIAGDVRARIEESFKTGETNLLSCTTTMEMGVDLGDLEA 1019 Query: 651 LASRSQQATIPGPEWHLNDELVVRSLGYKTVEL 683 + ++ +I + R + L Sbjct: 1020 VLCKNVPPSI--SNYQQRAGRAGRRAQVAPLVL 1050 Score = 53.0 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 39/209 (18%), Positives = 73/209 (34%), Gaps = 18/209 (8%) Query: 14 PVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHDATEEKVEKENSFQ 73 P YE+ C +C EP++ A G L +N G + D E+ E+ + Sbjct: 507 PAYEMFVCRNCGEPYVEAWQGAGNLSAVKNGG----PRHLLRLMPGDMAAEEEGDEDERE 562 Query: 74 PPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVC-SASGCGYRGMSGK 132 P ++ S LD + + + +D + S C R + Sbjct: 563 APTMLTFDPESGE-----VLDTDAPIGVQLEDVHLREDPDDGSRYLHRCSACNRRPARFQ 617 Query: 133 QPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQGTA 192 +P R G + + P GR L+TF+D+RQ A Sbjct: 618 EPVTRVRPGDEALAAVA--------AQALLEALPKAENGRDAPMGGRNLLTFSDNRQDAA 669 Query: 193 RMAVRMQQEAERSRLRGSVVEILSWHQRT 221 A ++ + +R +++ +++ + T Sbjct: 670 FFAPFFERTSREQAIRAAMLYVVNRNGST 698 >UniRef50_Q2JN13 Putative helicase n=1 Tax=Synechococcus sp. JA-2-3B'a(2-13) RepID=Q2JN13_SYNJB Length = 1878 Score = 85.7 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 92/695 (13%), Positives = 209/695 (30%), Gaps = 104/695 (14%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLL--ARDKKGKLVQWENKGGDEFSLQDEVPVE 58 ++ R +CDCG+ V ++ C C E L A L+ D+ +E Sbjct: 574 LHSQHRLSCDCGARVLDLIVCEVCGEVFLGGYAYQSGESLILTP----------DQPDLE 623 Query: 59 HDATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRR-----IGVINNDSIPLIIN 113 + + + + Q L+ + + N + + Sbjct: 624 GIPDLVNLTQRSGNYRVFWPLPHDPEPWATQPQYLEWTAGKTKRGWVEAKLNPATGELRQ 683 Query: 114 D----IEQVCSASGCGYRGMSGKQPF---RRALLGGPFYVTNIVPTVLEYCQDFTSD--E 164 D E + G QP R + PT L + + Sbjct: 684 DKSPPREGEVPGWVYQVKEGDGNQPALPSRCPRCDTDRALREAYPTPLRVHRTGFQKACQ 743 Query: 165 GKEGVGPDSLPG-RGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQT 223 G +P + R+L+ F+DSRQ A++A M+ + R +R +V +++ Sbjct: 744 VIAGALLREMPTPQSRKLVVFSDSRQDAAKLAAGMEMDHYRDMVRLLLVRSAEEYRQDLR 803 Query: 224 S----TAPNANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGG 279 + P+ ++L + ++ W + + Q + +A Sbjct: 804 AFLRCELPSPEERQQRLREYPRLLQDVEGMAEDW--AARDRFLNRQGDIATEALLWTQNR 861 Query: 280 KAATILVSRTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMR 339 + A V W EM+ + + P+L L + + P +S L+ + Sbjct: 862 RPANEQVRELWLEML----KSYGEKVPLLALRRTLADLLLHLGLCPGGMSFSALY-YSVN 916 Query: 340 RPKRTNSLETQGLVQVGYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQ 399 + + + ++ + + + E+ LD+ +L + + Sbjct: 917 KDRHPWT-------ELYNWQSQPVTRIAARTPEQNRHLDELDAYLADEMMFTLFAHAVRN 969 Query: 400 LDDELKNWIGSRFSSKF--VRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKT 457 ++ + ++ ++ + V + + + R+ + L + + K Sbjct: 970 IESFGQGYVTAQVPPELQDVASAVIRQLGIRKRHRYSKFCRPGTRRELPQYVERYLR-KL 1028 Query: 458 VNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLIT----DAWICPVTN 513 D+ + +E + N L + + ++ + CP Sbjct: 1029 EEQGKPDLKSQIEREL-------NKIGTRSENGLVLDPDRLYLVPVSREGLQGYRCPQCG 1081 Query: 514 KILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARD 573 G P + + + + + DY L+ + Sbjct: 1082 AFYLHTAGGWCP---------ECSGGRNTSKRSDPQAIRLQPSSLPRDLDYYAYLSDPEN 1132 Query: 574 WVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSE----RLQSYEKMFKNGQ 629 F AE + Q E R + ++++F G+ Sbjct: 1133 --------------------------EPFRMNAAELTGQTDKEDRLKRQRWFQEVFLEGE 1166 Query: 630 ------LNVLNCSTTMEMGVDTDRVMTLASRSQQA 658 +++L+ +TTME GVD ++ + + Sbjct: 1167 IPLAQGIDLLSVTTTMEAGVDIGGLLAVMMANMPP 1201 >UniRef50_D1WRW1 Serine/threonine protein kinase n=3 Tax=Streptomyces RepID=D1WRW1_9ACTO Length = 2112 Score = 85.7 bits (210), Expect = 8e-15, Method: Composition-based stats. Identities = 101/681 (14%), Positives = 188/681 (27%), Gaps = 111/681 (16%) Query: 18 VAFCNDCNEPHL--LARDKKGKLVQWENKGGDEFSLQDEVPVEHDATEEKVEKENSFQPP 75 +AFC +C + +L +K G++ + ++ ++ P Sbjct: 800 LAFCRECGQDYLTVWRTEKDGEIRYEPRRD----AVATGGRAGDGYLYIDTDRFPGSSPW 855 Query: 76 LIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCSASGCGYRGMSGKQPF 135 TSE +RL I + + +++ A G G+ Sbjct: 856 P-----PTSEEAIADRRLPESWLEIDDRGQEVVKKSY--RDRLPRAVTVDPYGNEGRGEL 908 Query: 136 RRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQGTARMA 195 A + PF +C + I++ +R Sbjct: 909 HAAFIPAPFL----------FCPQCS--------------------ISYEQTRGKDFAKL 938 Query: 196 VRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARAKQAREQAEEYRSWGM 255 + QE R S ++S + P A E Q ++ Sbjct: 939 ATLDQEG-----RSSATSLISASVVRSLDSVPEAALPKEARKLLTFVDNRQDASLQAGHF 993 Query: 256 PDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERADIRGPVLQYNHYLK 315 D ++++ + A A G E+ + + V L Sbjct: 994 NDFVQVTELRGALYRAALDAGQEGIPH--------EELATRVANALALHPAVYTGERDLP 1045 Query: 316 PEVFNENGGPLKLS---EMLLFREFMRRPKRTNSLETQGLVQVGYQGLEKIHKSPLHWQ- 371 P + L+ + L E R N LE GL+++ Y L + + W+ Sbjct: 1046 PRLAAAAAKTLREVIAFRLYLDLERGWRVTMPN-LEQTGLLEIDYADLSWLAEQDDRWER 1104 Query: 372 -EKGLTLDDW---RDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKF-VRNPESKDPE 426 L D + +KV LD +R S + ++ + +S+ + +P Sbjct: 1105 AHPALRQADAPLRTEIMKVLLD-EMRRSLAIDVQYFRDDFDSLQSASEERLVDPWRLGKS 1163 Query: 427 DNQNRR--WPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPL-AV 483 D+ +PQ + L G K + + + L V Sbjct: 1164 DSPKVATAYPQPSRPGMDRAGLFLSARGKYGKYLRRTHRGFRDDLDNAGLQTVIADLLKV 1223 Query: 484 LKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDT 543 L+ G ++ + F+ +P + + + T Sbjct: 1224 LRDAG-----IVTEVSLAPQKAGH------------FRRSSPTATGYRVTAAAIIWRAGT 1266 Query: 544 FVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFY 603 + + S E R + + +G Sbjct: 1267 GETGAHD--PLTRTYASGEGP--------------------RVNTFFRQLYREAADGLSG 1304 Query: 604 YRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGP 663 EH+AQ Q E+ F L +L CS TME+GVD + + R+ T Sbjct: 1305 LLAREHTAQVDPGDRQRREEDFSKADLKLLYCSPTMELGVDISSLNAVMMRNVPPTP--A 1362 Query: 664 EWHLNDELVVRSLGYKTVELN 684 + RS V Sbjct: 1363 NYAQRSGRAGRSGQPALVTTY 1383 >UniRef50_C8PSY6 Dead/deah box helicase domain protein n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PSY6_9SPIO Length = 1794 Score = 84.2 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 101/701 (14%), Positives = 199/701 (28%), Gaps = 153/701 (21%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVE-- 58 +Y R C CG+ V E C C E L L G + + V Sbjct: 530 LYTAPRNRCTCGAAVLEAVVCRQCGELFLSGYIDNRMLSNTPPLVGHGGAQNENVRTRII 589 Query: 59 -----HDATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIIN 113 D E + + + AAG G + + + + ++ Sbjct: 590 LYKISKDDKTENNARRPNAGNGIWRAAGYDPITGTVTGGIQGGYQSYTIQDENTDSF--- 646 Query: 114 DIEQVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDS 173 CG++ + R V V + D D ++ D+ Sbjct: 647 ----PLECPRCGFKLRDSGEG--RNTFTALTTHGTGVQKVNQLFADGLMDILRKANPNDA 700 Query: 174 LPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEIL--SWHQRTQTSTAPNANA 231 +L+ F+DSRQ A+++ ++ + R LR ++++ L + + N N Sbjct: 701 ------KLVLFSDSRQAAAKLSAGIELDHYRDSLRAALMQSLEEASDAKMYLKKIRNKNI 754 Query: 232 DL----EKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVS 287 ++ + K Y + D+ LS Q +L +L Sbjct: 755 TFKEVPPEIQDKIKTDITLNNWYTKIMVVDEGFLSPQQISELNHYLSTDN-----VLLSD 809 Query: 288 RTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLK--------------LSEMLL 333 T M +++ + GP Y + FN+N L + Sbjct: 810 ITTAVMTRLVRKGINPAGP------YPSYQTFNDNNQSKLSWETAIDWKANYQFLRDTQA 863 Query: 334 FREFMRRPKRTNSLETQGLVQVGYQGLEKIHKSPLHWQEKGLTLDDW-RDFLKVTLDHYV 392 R+F R ++E V + T ++ + KV+ Sbjct: 864 QRDFADRIANQCTVEILKTV----------------FGTNKRTFENLGIGYFKVS----- 902 Query: 393 RESNFTQ--LDDELKNWIGSRFSSKFVRNPESKDPED--NQNRRWPQIRNGNVSHRLAKL 448 R + L D + +G S + + E + E + R++ +I G R Sbjct: 903 RSNGSVDQVLADSIVRILGE---SWRILDSEESETESLAQRARKFIEIFTGTRYSRDVN- 958 Query: 449 LMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWI 508 I L L + D R Sbjct: 959 -------------KAPEIWNVL----NALIDKKVIESNDDLR------------------ 983 Query: 509 CPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGL 568 +T + L+ ++ + + Q+ Sbjct: 984 --ITGRGLE-------------FVTCNIGDPIIQCSKCGTLDLH------PDQQFCTFCR 1022 Query: 569 AKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMF--- 625 +K + L + + ++ +T ++ E E + Q + Q ++ F Sbjct: 1023 SKITE--QDRILFTKEQQQSFYTQMSSE--ERISRLHCEELTGQTNKTDAQKRQRYFLGL 1078 Query: 626 -------KNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQAT 659 ++++L+ +TTME GVD + + + Sbjct: 1079 LKSEENKLTNEIDLLSVTTTMEAGVDIGSLSAVMLGNVPPQ 1119 >UniRef50_A9CY68 DEAD/DEAH box helicase domain protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9CY68_9RHIZ Length = 1848 Score = 83.4 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 46/237 (19%), Positives = 79/237 (33%), Gaps = 27/237 (11%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPH-------------LLARDKKGKLV-QWENKGG 46 MY CDCG+ V E+ C +C + L + K + + E+ Sbjct: 569 MYSQPMDTCDCGARVLELFTCRNCGTAYGRAYTDDIDEPHDLWSEPGKPQRMASGESAPL 628 Query: 47 DEFSLQDEVPVEHD-ATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINN 105 + L E D A + E P I + + +D N+ Sbjct: 629 EPIDLLLEESAREDVAEPADYDLETGQLNPNTIGPRTRTVFIRQGRLVD------AASND 682 Query: 106 DSIPLIINDIEQVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEG 165 D + + CG G+ + G ++ ++ + Sbjct: 683 DDGGSAPEPPGKFVPCAVCGKTARFGRSYVQDHQTKGDQPFQALLTRQIQIQPPGPQE-- 740 Query: 166 KEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQ 222 P RGR+++ F+DSRQ AR+A +Q +ER LR ++ W Q + Sbjct: 741 ----ATRFAPLRGRKVLAFSDSRQVAARLAPNIQMYSERDSLRPLIISGFKWLQDQE 793 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 35/74 (47%), Gaps = 19/74 (25%) Query: 604 YRTAEHSAQQSS-------ERLQSYEKMF------------KNGQLNVLNCSTTMEMGVD 644 AEH+AQ ++ + + +E +F ++ +++L+ +TTME+G+D Sbjct: 1073 LIAAEHTAQLNAPQNEDVFSKAEEHELLFQDIALVGSSLRSRSTAIDILSSTTTMEVGID 1132 Query: 645 TDRVMTLASRSQQA 658 + +A R+ Sbjct: 1133 LGALTGVALRNMPP 1146 >UniRef50_A9KIX6 DEAD/DEAH box helicase domain protein n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KIX6_CLOPH Length = 1759 Score = 81.5 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 108/694 (15%), Positives = 212/694 (30%), Gaps = 174/694 (25%) Query: 7 QNC-DCGSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEF--SLQDEVPVEHDATE 63 + C +C +YE+ C ++ A D EN G EF S +++ E Sbjct: 554 ETCPECNGRMYELMMDRRCGTLYIRAFDD----QNIENYDGLEFLWSRNNQIMKEPKEIH 609 Query: 64 EKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRI------------------GVINN 105 + E + ++ T+ LD +T + N Sbjct: 610 LWIMPEGRIDFFKLGKKTGKAKKNSTVGYLDSKTGLLFRDESHAGDEGYLKVLISSTFNE 669 Query: 106 DSIPLIINDIEQVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEG 165 D + N + CG R + PF PF NIV E D S Sbjct: 670 DVLAFTFN------TCPNCG-RDHNKITPFLT-RGNEPF--ANIVKEQFEVQPDIKS--- 716 Query: 166 KEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTST 225 L G++++ F+DSRQ A +A M ++ R ++ Q+ + Sbjct: 717 -------ELKNGGKKVLLFSDSRQRAATLARDMTIASDGDSGRQAIFMA----QKLLDDS 765 Query: 226 APNANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATIL 285 + + DL A + + + E ++ + ++ + Sbjct: 766 SGESTIDLLYYAF-----------LKVVYDNKLSFFYGKEKEMFKRQLKKYEELYSSRTI 814 Query: 286 VSRTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTN 345 + + + + D+ +L N N G L++++L + + Sbjct: 815 RK--FDRLKSNIGNPPDMFYQLLLKNISDSYRSLNNLG----LAQVVLADQ-------GD 861 Query: 346 SLETQGLVQVGYQGLEKIHKSPLHWQEKGLTL-DDWRDFL---KVTLDHYVRESNFTQLD 401 + E ++ YQ LEK+ ++ + W +L K+ + F ++ Sbjct: 862 AGE-----EIEYQILEKVENLTGISGTDVYSIYNTWIQYLIVNKIAI--------FPEIG 908 Query: 402 DELKNWIGSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAA 461 D++++ + E ++ ++P+ Sbjct: 909 DDVRD---------SILAYERGRFGIDEIAKFPEF----------------LNDIIKEKY 943 Query: 462 TIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDA-WI-CPVTNKILDTA 519 +I + + +T L + NR YL + ++ WI C I Sbjct: 944 DESVIQALIDR-FDDITQILQSPGRNHNRRYLFGTRLILKAAENSEWIKCDRCAGISTYT 1002 Query: 520 FKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDP 579 G Y + + + ++ +W+ E + Sbjct: 1003 LWGHCIYCGSTEYVRKVDDEHFKRYL--------LWRKPVIDALNRERIHNI-------- 1046 Query: 580 LIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQS--------YEKMFKNGQLN 631 T EH+AQ S + + YE F+N LN Sbjct: 1047 -------------------------ITEEHTAQLSYKDNKKDVWGTTEKYELAFRNITLN 1081 Query: 632 -------VLNCSTTMEMGVDTDRVMTLASRSQQA 658 VL+C+TTME+G+D + ++ R+ Sbjct: 1082 EDEEPIDVLSCTTTMEVGIDIGSLTSVGLRNVPP 1115 >UniRef50_C9RZB7 DEAD/DEAH box helicase domain protein n=2 Tax=Geobacillus RepID=C9RZB7_GEOSY Length = 1787 Score = 78.8 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 102/696 (14%), Positives = 192/696 (27%), Gaps = 183/696 (26%) Query: 1 MYVNQRQNCDCG--SPVYEVAFCNDCNEP------------HLLARDKKGKLVQWENKGG 46 MY + + C C + VYE+ C +L A KG + + Sbjct: 556 MYDSPKLQCTCSKEARVYELLTHRKCGTAFIRGYISKKDGNYLWAEKGKGIV----GEEL 611 Query: 47 DEFSLQDEVPVEHDATEEKVEKEN--SFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVIN 104 E L E P E E+ + + ++ + GY L Sbjct: 612 TEIHLLVEPPHEKIQKGERSVRPVWLDIRTGYLMKSPPEDPEGYLKLYLPHDEANKNKKK 671 Query: 105 NDSIPLIINDIEQVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDE 164 +I Q C R + G + PF N+V ++ Sbjct: 672 KQTITF------QQCPCCM---RKVQGTITDLKTKGEQPF--ANLVRE--QFLLQPPVKL 718 Query: 165 GKEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTS 224 K+ LP GR+++ F+D RQ A R+ ++ + + Q+ Sbjct: 719 NKQ------LPNEGRKVLLFSDGRQK----AARLARD---------IPHEVELDSFRQSI 759 Query: 225 TAPNANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATI 284 LAA+ ++ + ++ + + I Sbjct: 760 L----------LAAQKLIDQDIEPKLSGALYCSLLQVIDEHKLYFFEGQDRKSLAYHVQI 809 Query: 285 LVSRTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEML--LFREFMRRPK 342 L D G E ENG L L R+ Sbjct: 810 LHE--------------DFDG---------DYEELIENGDIELLPRFKTELLRQLCHPLY 846 Query: 343 RTNSLETQGLVQVGYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQ-LD 401 + T G V+ + + ++ + K D YV F Q + Sbjct: 847 SVYTTAT-GYVEPVKREMARVERKLKEILSKE--------------DIYVLTMLFIQEML 891 Query: 402 DELKNWIGSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAA 461 D + F + D + G + L ++ L Sbjct: 892 DRVAIDSTIHFYERLKIRGFGGDDW--------GVEKGYIPKNLENIIHLYV---QSEEH 940 Query: 462 TIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSL--ITDAWICPVTNKILDTA 519 +I++ + R+YL + T + C ++ Sbjct: 941 KKEIVDAL-----------FKLCTESEGRYYLSPRKLKLIPGIYTTWYKCNDCKEM---- 985 Query: 520 FKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEG--LAKARDWVSH 577 ++ A+ + EI ++ + D +G + + +++ Sbjct: 986 ---------------NIVAAKNKCVNCLSENI-EILDVNSKRLDSEKGFWRSPIQKILTN 1029 Query: 578 DPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQ-------SYEKMFK---- 626 I+ + EH+AQ S + + YE F+ Sbjct: 1030 HEKISNI--------------------TVEEHTAQLSQKDAKIAIATTEEYELRFQDIIL 1069 Query: 627 ---NGQLNVLNCSTTMEMGVDTDRVMTLASRSQQAT 659 G +++L+C+TTME+GVD + + R+ Sbjct: 1070 DVLEGPVDILSCTTTMEVGVDIGSLTAVGLRNVPPQ 1105 >UniRef50_D0HYY2 Helicase n=3 Tax=Proteobacteria RepID=D0HYY2_VIBCH Length = 1831 Score = 77.6 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 110/696 (15%), Positives = 204/696 (29%), Gaps = 174/696 (25%) Query: 1 MYVNQRQNCDC--GSPVYEVAFCNDCNEPHLLA----------RDKKGKLVQWENKGGDE 48 ++ R+ CDC S VYE+ DC L + G L EN D Sbjct: 582 LHTKPRRQCDCLGKSRVYELFTHRDCGAAFLRGYVSSDLNFIWHEANGPLT--ENGSLDL 639 Query: 49 FSLQDEVPVEHDATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSI 108 + V + E +I GY R++ + + + Sbjct: 640 VPIDILVEDKVHPRGRYREMWLHMSSGKLIDTCPLDSNGY---------RKVFIPDRLAT 690 Query: 109 PLIINDIEQVCSASGCGYRGMSGKQPFRRALLG-GPFYVTNIVPTVLEYCQDFTSDEGKE 167 + E + G PF + + + ++D Sbjct: 691 GEPLLFDECPVCMRNTSLSNGESSKIMDHVTKGEAPF-TALVRTQMSNQAPNRSADAK-- 747 Query: 168 GVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAP 227 P GR+++ F+D RQ AR+A + ++ E R ++ L+ + + S P Sbjct: 748 ------HPNGGRKVLIFSDGRQKAARLARDIPRDIELDVYRQAI--ALACVRLRECSKEP 799 Query: 228 NANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVS 287 N L A + + + + PD KL A+ E Sbjct: 800 RPNNSL----YLAFLSVLSEHDLQMFDGPDALKLIAARNEFSRDYG-------------- 841 Query: 288 RTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSL 347 ++ L++ + P + + L ++L + SL Sbjct: 842 ---GDLEEALEDNFE-------------PSEPPPSRYKVALLKLLCGTYY--------SL 877 Query: 348 --ETQGLVQVGYQGLEKIHKSPLHWQEKGLTLDD---------WRDF-LKVT-----LDH 390 T G V+ K + +++ KGL L D W D L+ +D Sbjct: 878 IGTTVGFVE---PSKAKFKRLVNNFKSKGLGLSDSDVSALSVAWIDSQLRAFSFDSSIDL 934 Query: 391 YVRESNFTQLDDELKNWIGSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLM 450 ++R + GSR G L Sbjct: 935 HLRYKAASYYKPTW----GSR---------------------------GRFERAFRDSLT 963 Query: 451 LGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICP 510 + + TI+ + + +E L P+ + H+ + C Sbjct: 964 QRLFW---SDNTIEEVESVFREQLTLEQDNTFFLSPNSLVINIDLNHIW-------YQCS 1013 Query: 511 VTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAK 570 T +P + + +T +A LD + Y Sbjct: 1014 DC-----------TSLMPIVLKEDICVSCGSNTAIA----------LDPRSDTYINARKG 1052 Query: 571 ARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKN--- 627 D L+ + R + + + + R++ HS + YE F++ Sbjct: 1053 FWRAPVEDALVNRTRLSTL--SVEEHTAQLSNRDRSSVHST------TELYELRFQDVLI 1104 Query: 628 ----GQLNVLNCSTTMEMGVDTDRVMTLASRSQQAT 659 ++VL+C+TTME+GVD + ++ R+ Sbjct: 1105 DSDSRPIDVLSCTTTMEVGVDIGSLTAVSLRNVPPQ 1140 >UniRef50_C8XHE6 Helicase domain protein n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XHE6_NAKMY Length = 1780 Score = 76.9 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 114/712 (16%), Positives = 207/712 (29%), Gaps = 149/712 (20%) Query: 1 MYVNQRQNC---DCGSPVYEVAFCNDCNEPHLL--------------------ARDKKGK 37 +Y R +C CG+ V E+ +C +C + L A D G Sbjct: 520 LYDTPRSSCLVPKCGARVLELLYCYECGDVSLGGYIVDKMGDGTVVLSTTPVKAGDNTGD 579 Query: 38 LVQWENKGGDEFS-LQDEVPVEHDATEEKV-----EKENSFQPPLIIAAGETSEAGYTLQ 91 LV + DE+ L P + ++ E + + + A + T Sbjct: 580 LVYR--RTDDEYRWLWIGSPAPDEPIRHQLPASVSEDRATIEFNFVEAIYDPGLGSLTPA 637 Query: 92 RLDRQTRRIGVINNDSIPLIINDIEQVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVP 151 I +D + I + +VC G + F + P Sbjct: 638 SGPGNCVTIRHSGSDLDGVAIPALPEVCP-RCHGRQSNRDLSVFFAGSVRSPIRAHTSGR 696 Query: 152 TVLEYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSV 211 + L +S R I FTDSR AR+A + R ++R V Sbjct: 697 SQLNQMAVSQLFRSLGHEASES------RTIVFTDSRDDAARIAAGISLNNFRDQVRQVV 750 Query: 212 VEILSWHQRTQTSTAP--NANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQL 269 ++L + + +A A + Y + + ++ Sbjct: 751 RQLLHDRVSPVPTLRALIRGALNAGDVAMALSIASGRRSLYDKLRLEHAGLATDEDRAEI 810 Query: 270 EQAYQAATGGKAATILVSRTWTEMVNELKERADIR-------GPVLQYNHYLKPEVFN-- 320 E A + A A ++ + +V A + G + Y Y P+ + Sbjct: 811 ESAEREAETLPWALMVRETS-RVLVKAGINPAGVGPSVAHSVGDLPWYRAYPPPQEADWA 869 Query: 321 ----ENGGPLKLSEMLLFRE------FMRRPKRTNSLETQGLVQVGYQGLEKIHKSPLHW 370 P++L L E F R + S G+V+ G +P W Sbjct: 870 RLESRIAEPVQLERERLTSEAVTQAVFDRASRDLESTR-LGVVRAG-------ITAPSDW 921 Query: 371 QEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVRNPESKDPEDNQN 430 GL +D D + S+ +L + G + Sbjct: 922 ---GLAQEDADDLI----------SSVLRLLGIANRYEGGYVAMTTSAP----------- 957 Query: 431 RRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNR 490 G+V L K+ +G G + I ++ +L+ + LT L+ + Sbjct: 958 --------GSVRRYLTKV-AVGQGLEPERL--IALVGEFLRSS--GLTDDSWTLRTMSGQ 1004 Query: 491 FYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVT 550 L + ++ W+C H+ + + Sbjct: 1005 DVLLLK----VPGSELWVCSNCG--------------TVHLHRSVGVCTNEECVNGRLEP 1046 Query: 551 MPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHS 610 P + D W++ L RV E +E Sbjct: 1047 TPVGEQNDDYYG-----------WLASHEL------------RRMRVAELTGQTSLSEQR 1083 Query: 611 AQQ---SSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQAT 659 A+Q L + ++ L++L+ +TTME+GVD + +A + Sbjct: 1084 ARQRLFRGAVLPAPQESKLADPLDLLSVTTTMEVGVDIGSLRAVAMANMPPQ 1135 >UniRef50_D1CII2 DEAD/DEAH box helicase domain protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CII2_THET1 Length = 1698 Score = 75.7 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 99/688 (14%), Positives = 192/688 (27%), Gaps = 153/688 (22%) Query: 4 NQRQNCDCGSPVYEVAFCNDCNEPH-------------LLARDKKGKLVQWENK------ 44 QR D ++ + FC +C + + L R + +L+ ++ Sbjct: 429 QQRSPRDPQVALFPMVFCRECGQEYYMVTKLSSSADGELELRQRSPRLLPITSEEEEDSE 488 Query: 45 ----GGDEFSLQDEVPVEHDATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRI 100 + L + E E E+ + E + + RI Sbjct: 489 EGYVAIADAELWNGRE-EDLPDEWLEEETRGVRLKPSYKKYRPREIWVHPSGMAHEWERI 547 Query: 101 GVINNDSIPLIINDIEQVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDF 160 D C + F + + T+L D Sbjct: 548 -----DDAIACWYVPRPFVLCLRCMTTFDPREGDFAKLSTLSQ-VGRSTATTIL--TSDA 599 Query: 161 TSDEGKEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQR 220 D G P++ R++++FTD RQ + A + A+ +RG+++ L H R Sbjct: 600 VLDMADLGEAPEA-----RKILSFTDVRQDASLQAGHLNDFAQLVTVRGALLRALEQHGR 654 Query: 221 TQTSTAPNANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGK 280 + ++ +A Q E+ ++ T Sbjct: 655 LEAWELGK-------------------------------QIFEALDLQPEEFMRSETQTT 683 Query: 281 AATILVSRTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRR 340 T+++ L + P Sbjct: 684 VPYYRAREAMTDLLQYLALTD-----LRSGWRLSLP------------------------ 714 Query: 341 PKRTNSLETQGLVQVGYQGLEKIHKSPLHWQE----KGLTLDDWRDFLKVTLDHYVRESN 396 +LE GL +V Y+ LE + W+ + T + ++ L+ LD+ +R+ Sbjct: 715 -----NLEQCGLAKVTYRDLEALSLDEPTWKGLPFFEEATPERRQEVLRHVLDY-LRQRL 768 Query: 397 FTQLDDELKNWIGSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFK 456 + + + W+ S + + W LL GA Sbjct: 769 VIRSEHLQREWLRSNLCRRT---------AEYLKDNWALTPEDIYLTSRTALLP-GAQVP 818 Query: 457 TVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLP---KEHMTFSLITDAWICPVTN 513 I + YL H+ + + I + Sbjct: 819 RFEEDGRTTI---------------GLGARSKVGRYLRSTLGNHLGIGELDEI-IKQLCL 862 Query: 514 KILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVT-MPEIWKLDRSQEDYAEGLAKAR 572 ++ + F Y+ + D V + P + + + Sbjct: 863 RLDGSLF-----YVLKSGGEPWGIMLNLDQLVWEPGDGTPPAPNPINQKSVHKVRTEHLK 917 Query: 573 DWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNV 632 + RS + +T + + R EH+ Q ER + E F+ G+L + Sbjct: 918 E-----------RSSDYFTYMYRQRARHMKNIRAGEHTGQVDLERRRQREDQFRKGELPI 966 Query: 633 LNCSTTMEMGVDTDRVMTLASRSQQATI 660 L CS TME+G+D + + R+ T Sbjct: 967 LYCSPTMELGIDIADLSAVHMRNVPPTP 994 >UniRef50_C0Q9L0 Dbp n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0Q9L0_DESAH Length = 1961 Score = 75.7 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 67/338 (19%), Positives = 109/338 (32%), Gaps = 71/338 (21%) Query: 336 EFMRRPKRTNSLETQGLVQVGYQG------LEKIHK-SPLHWQEKGLTLDDWRDFLKVTL 388 EF R NSLE GLV V Y+ ++ I P H +++ ++ + L Sbjct: 763 EFCTPGGRRNSLEALGLVHVTYESKRFKRLVKTITPFIPEHDRKEAKSVA-------LFL 815 Query: 389 DHYVRESNFT----QLDDELKNWIGSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHR 444 +R +D G +S K P W ++R Sbjct: 816 LETIRRGKAIVNLYDIDLTDPFIWGEIYSQKRSFELHKTSPGYTT--GWIPAEGRKQNNR 873 Query: 445 LAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLIT 504 L++ G+ T+L W L L L+P + L + + F Sbjct: 874 RTWLIVERLGWSWEQT------RTFLSNFWESLI-SLKFLRPARPGYGLDAKLIRFENGN 926 Query: 505 D--AWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQE 562 D C E L+ +DT + + K E Sbjct: 927 DHTLHRC------------------------EDCGLSTFDTVSSCCSSFLCKGKTKPVSE 962 Query: 563 DYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYE 622 + + +VS I D+ + EH+A S+E Q E Sbjct: 963 KERKKRIEYNHYVS----------------IYDQGTALTT--KANEHTASLSTELRQQIE 1004 Query: 623 KMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATI 660 + F ++N+L+C+TTMEMGVD + + + I Sbjct: 1005 QDFSIRKINLLSCTTTMEMGVDLGDLEAVVCLNIPPGI 1042 Score = 66.5 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 43/214 (20%), Positives = 75/214 (35%), Gaps = 15/214 (7%) Query: 12 GSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVE--HDATEEKVEKE 69 G P Y + C C +P++ KL+ KG D+ Q V T+ E Sbjct: 506 GRPYYPLFVCRRCGQPYIEGFTDGSKLLN-SLKGIDQSDKQYIRKVFWLGQPTKSSALDE 564 Query: 70 NSFQPPLIIAAGETSEAGYT------LQRLDRQTRRIGVINNDSIPLIINDIEQVCSASG 123 + P+ + + Y L+ D + I + ++ I + V + Sbjct: 565 LDDETPVKVQKDKNKSPTYLNPENGDLKHEDEGGQYIRLYEVETTRDEIEKNDYVRKCNA 624 Query: 124 CGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLIT 183 CG R + G +V CQ + P +GR L+T Sbjct: 625 CGSRASGASAEIISPMNSGNEAFGAVV------CQKVLENLPPAKNIDHVTPMQGRSLLT 678 Query: 184 FTDSRQGTARMAVRMQQEAERSRLRGSVVEILSW 217 F+D+RQ A A ++ + LR ++ ++L Sbjct: 679 FSDNRQNAAYFAPYFERTSGELALRTAIYQVLKK 712 >UniRef50_Q92JT3 Putative uncharacterized protein n=1 Tax=Sinorhizobium meliloti RepID=Q92JT3_RHIME Length = 1832 Score = 74.9 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 48/322 (14%), Positives = 94/322 (29%), Gaps = 38/322 (11%) Query: 8 NCDCGSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHDATEEKVE 67 C CG V E+ +C DC E L G +V + F+ + + Sbjct: 573 KCGCGGQVLELLYCYDCGEAFL-----GGYIVPTTDPLLAGFTFVEATRAGEGNDKASQV 627 Query: 68 KENSFQPPLIIAAGETSEAGYTLQR----------------LDRQTRRIGVINNDSIPLI 111 E + G + + L+ + +G N LI Sbjct: 628 NERTIDEYRWYWPGGELPPRSSWEHQSPSGKAVRMQFQRGTLNHFSGELGNDTNPGSGLI 687 Query: 112 I-------------NDIEQVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQ 158 + +VC ++G++ RRA G V + + + Sbjct: 688 FCRPATGLEASETIAALPEVCPCCLSSKISINGQEENRRAFFSG--MVKSPIRGLRTGLN 745 Query: 159 DFTSDEGKEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWH 218 T + + ++I FTDSR A +A ++ R +R V L+ Sbjct: 746 VTTQLVADRAMFATGDGDQSEKMIAFTDSRDDAADLAAGIELNHYRDLIRQLVHSSLAPR 805 Query: 219 QRTQTSTAPNANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATG 278 + ++ ++ + AE A++ ++A A Sbjct: 806 KIPASTELLAYVGSDPSDDPILRELVDAAERQTPGIFTAVKLDKFGVADKAQKALIARHD 865 Query: 279 GKAATILVSRTWTEMVNELKER 300 ++ W ++ + R Sbjct: 866 AGVSSP--RVGWPSLLEMMSTR 885 >UniRef50_UPI00017895CA DEAD/DEAH box helicase domain protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017895CA Length = 1759 Score = 74.2 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 100/672 (14%), Positives = 201/672 (29%), Gaps = 129/672 (19%) Query: 6 RQNCD-CGSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHDATEE 64 R CD CGS VYE+ C L KG + Q E EF + + +E Sbjct: 560 RDTCDSCGSKVYELLNDRRCGALFL-----KGYMYQ-EPFNAREFVWNSIGELYDENCKE 613 Query: 65 K----VEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVC- 119 + +EN + G L D + G ++ P + Sbjct: 614 VHFYIISEENYKKTTKETKVGWLHAPTGRLFIDDSYANKQGFLHVAYNPKELKGKPGKLT 673 Query: 120 --SASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGR 177 S C ++ + FY N+V L D LP Sbjct: 674 FDSCPKCSKAKLNPSDFVTKGNES--FY--NLVSEQLSIQPPTIFDN----DLIRKLPNA 725 Query: 178 GRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLA 237 GR+++ F+DSRQ A +A + + A+ R ++V + ++ + ++ +A Sbjct: 726 GRKVLLFSDSRQRAAGLAKDLTRAADDVAARKAMVIAVQNLEKWAAAQNRQPTMNILYVA 785 Query: 238 ARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNEL 297 + EQL + + + + + + Sbjct: 786 FLEVAVTHNLHLFYGDQKKSLVNDMNKVREQLRRNERRNK---------AMNYETLKADF 836 Query: 298 KERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGY 357 + +L +++ SL GL + Sbjct: 837 NTTPGLYD--------------------EQLLKLMCSSY--------RSLSDIGLCYIKP 868 Query: 358 QGLEKIHKSPLHWQEKGLTL--DDWRDFLKVTLDHYVRESNFT--QLDDELKNWIGSRFS 413 +KI + + + L D++ + +++S + DE+ Sbjct: 869 CSEDKIDEVLDELDDNNINLSVDEFESIFASWANFVMKDSYALGDTISDEV--------- 919 Query: 414 SKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEA 473 ++ R+ NG +S + ++L + + INT Sbjct: 920 --------RENARPTSYGRFGIPANGKLSGGILRVL-------IEQGYSPEEINTI---- 960 Query: 474 WAQLTGPLAVLKPDGNRF-YLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHIS 532 + L A + N + + +T++ + + C + G + Sbjct: 961 YKCLLKYTATPQGSENSYLNMNMLTLTYNNSHEWYHCKKCAGVFARTLWGKCAHCGDS-Q 1019 Query: 533 FEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTD 592 +T + F + + EI + Q + + +SH + + +W+ Sbjct: 1020 VAQMTKEDFRRFDFWRKPVIEIIESSTPQPITSINTEEHTAQLSHKD-----QRQKMWST 1074 Query: 593 INDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLN------VLNCSTTMEMGVDTD 646 D YE F++ Q+N +L+C+TTME+G+D Sbjct: 1075 TED-------------------------YEMRFQDVQVNDDTPVDILSCTTTMEVGIDIG 1109 Query: 647 RVMTLASRSQQA 658 + + R+ Sbjct: 1110 SLTAVGLRNIPP 1121 >UniRef50_Q2SFN9 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster n=2 Tax=Proteobacteria RepID=Q2SFN9_HAHCH Length = 1745 Score = 71.5 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 11/115 (9%) Query: 587 ENVWTDINDRVVEGGFYY---RTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGV 643 +N++ +I + +V G + EH+AQ S ++ + EK F+ L L CS TME+GV Sbjct: 933 KNLYQNIAEFLVAGNRTFFELEAREHTAQVSIDKREEREKQFREATLKTLFCSPTMELGV 992 Query: 644 DTDRVMTLASRSQQATIP--------GPEWHLNDELVVRSLGYKTVELNEFILPA 690 D + ++ R+ T ++ + F PA Sbjct: 993 DIASLNSVYLRNVPPTPANYAQRSGRAGRSGQPALVITYCAALSPHDQYFFSDPA 1047 >UniRef50_C1XMC1 Helicase family protein with metal-binding cysteine cluster n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XMC1_MEIRU Length = 917 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 64/347 (18%), Positives = 107/347 (30%), Gaps = 59/347 (17%) Query: 556 KLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVW-TDINDRVVEGGFYYRTAEHSAQQS 614 + R + GL R + + R N + + + EH+AQ Sbjct: 103 FIWRPGDGSRPGLDPLRVRLRENAE----REANAFFSAFYRLTAQNLGGLEAREHTAQVP 158 Query: 615 SERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVR 674 S+ + E+ F+ G+L VL CS TME+GVD + + R+ T + R Sbjct: 159 SKEREQREEDFRAGRLPVLYCSPTMELGVDISTLNVVNMRNVPPTP--ANYAQRSGRAGR 216 Query: 675 SLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFND-HEEAQSL 733 S V F A + + F +R ++ L Sbjct: 217 SGSPALV----FTYAASGNSHDQY----------------FFRRPRLMVAGAVSPPRLDL 256 Query: 734 MNNTRITGVHYTDRYLQNPVALAL---LGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNR 790 N I +LQ A LGS L + D + L RP R Sbjct: 257 TNEELIRS------HLQAVWLAATGADLGSSLADILEVEGDEPTLAL--------RPSVR 302 Query: 791 PFHDWMSIADFQDFADQWFAAALGRPVELTVFDSPRDIPHHRKLTVTFEDG--QVLKIRF 848 +D A QD + ++ T + +G + RF Sbjct: 303 --NDLQRPAAVQDALKRAKRVLADLMP---------ELEQAPWYTPAWVEGVMEQAYARF 351 Query: 849 DQGMGYWRINFSSQWHYFDFRDDVSFQLVK-MAQACKEGNVANSEES 894 ++ WR + + F + V + A+ + + + ES Sbjct: 352 EEACERWRTLYKAAREQFQVQSRVILDASRSAAEKDQARRLRSEAES 398 >UniRef50_B2JBC8 DEAD/DEAH box helicase domain protein n=4 Tax=Cyanobacteria RepID=B2JBC8_NOSP7 Length = 1782 Score = 71.1 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 100/691 (14%), Positives = 191/691 (27%), Gaps = 138/691 (19%) Query: 15 VYEVAFCNDCNEPHLLARDKKGKLV-----------QWENKGGDEFSLQ-DEVPVEHDAT 62 +Y + FC +C + + + R K + ++ E L DE + + Sbjct: 539 LYPLVFCRECGQDYYVVRYDADKHIILPQLPTALDISPDDADITEGYLTLDEPELWDTSD 598 Query: 63 EEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCSAS 122 E+++ + + + ++L + + + Sbjct: 599 EDRLPDSWFSETKKKGRVAKKDFVRFIPRKLQILPNGKVTSSLLQETTCWFIPKPFLTCL 658 Query: 123 GCGY-RGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRL 181 CG + + + L + T+L C TS + G + + ++ Sbjct: 659 NCGVLHDKKRNEFAKLSRLSSE--GRSTATTLL--CLSTTSRLKQVFTGEKA---KAAKI 711 Query: 182 ITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARAK 241 ++FTD+RQ + A + S LR A L + A+ K Sbjct: 712 LSFTDNRQDASLQAGHFNDFVQTSFLRA---------------------ALLGAIQAKGK 750 Query: 242 QAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERA 301 + M QA + + I Sbjct: 751 LTHSELASVVVQYMGITQNDYAKQAAEFGVGKRRNEEAFRKLIEYR-------------- 796 Query: 302 DIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGLE 361 + + + ++P +LE GL+ + Y GL+ Sbjct: 797 -LYEDLRRGWRIVQP-----------------------------NLEQCGLLIIEYDGLQ 826 Query: 362 KIHKSPLHWQEKGLTLDDWRDFLKVTLD--HYVRESNFTQLDDELKNWIGSRFSSKFVRN 419 + WQ+ L L+ T + ++ L EL + Sbjct: 827 EACADNNLWQKHRHPL-----LLQATPQQRFIITQAFLNHLRRELAI-------DAKLLQ 874 Query: 420 PESKDPEDNQN---RRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQ 476 P+ KD ++ + P + + N LA + G + Sbjct: 875 PDQKDSLKSEVIQALKEPWVFDENEYLYLATWATISTGGNEKAKVKL------------T 922 Query: 477 LTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHL 536 + N + L + L+TD + ++D A YL S L Sbjct: 923 TRSKIGRFLRSPNTWSLRSQ-----LLTDVEFNSLITTLID-ALCD-AGYLVQEKSEVQL 975 Query: 537 TLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDR 596 + +P R + + +S + N Sbjct: 976 RIDSLLWKATNLKEIPTDPLTSRRLQGNDKPN------ISVNQFFQGFYQTN-------- 1021 Query: 597 VVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQ 656 EH+ Q S++ Q E+ F+ GQL L CS TME+G+D + + R+ Sbjct: 1022 -ALQIQTMEGREHTGQVSNKDRQEREEKFRQGQLAALFCSPTMELGIDISDLSVVHLRNV 1080 Query: 657 QATIPGPEWHLNDELVVRSLGYKTVELNEFI 687 + + RS V I Sbjct: 1081 PPSP--ANYAQRSGRAGRSGQQALVITYASI 1109 >UniRef50_Q4KCB1 Helicase n=3 Tax=Gammaproteobacteria RepID=Q4KCB1_PSEF5 Length = 1948 Score = 70.3 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 94/693 (13%), Positives = 205/693 (29%), Gaps = 149/693 (21%) Query: 15 VYEVAFCNDCNEPHLLARDKK-------GKLVQWE----------------NKGGDEFSL 51 ++E+ +C C + + + + +L+ + DEF++ Sbjct: 640 LFELLYCEACGDLFVGGQRGQSSGSMNATELLPSAANLEHLPERPGAEYYDDMTLDEFAV 699 Query: 52 QDEVPVE---HDATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSI 108 + D ++ E + I+ GE ++ G L QT+ ++ D Sbjct: 700 FWPRRGDWIGSDKGYDQWEPAHLNPDTGIVEIGEIAKEGNIAGYLYYQTK--AAVSKDKE 757 Query: 109 PLIINDIEQVCSASGCGYRGMSGKQ------PFRRALLGGPFYVTNIVPTVLEYCQDFTS 162 Q CG + P R G + + E Sbjct: 758 RSTQQPSAQPFCCPKCGTDYSNRPDTNRSRSPIRAFRTGVTKSSQLVATELFELLH---- 813 Query: 163 DEGKEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQ 222 G P I F+DSRQ A A+ +++ R R +V + + Sbjct: 814 ---AIGAEPKG--------IVFSDSRQDAAAQAMEIERLHLRDLRREVLVTAARSYVKDA 862 Query: 223 TSTAPNANADLEKLAARAKQAREQAEEYRSWGMPDQAKL---SQAQAEQLEQAYQAATGG 279 + + +E+L +A+ A ++ E R + + + + + +L++ + G Sbjct: 863 SIEVLTSKEIIERLI-KAETAGDKDEVIRLSELLKKQTVACGPKTRKVKLDKLLEFGNDG 921 Query: 280 KAATILVSRTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMR 339 I L F +NG + L + Sbjct: 922 SIGRITAEL------VRLGISPYKHSSSNDAKELPWYREFEKNGDLIAYDHTLSY----- 970 Query: 340 RPKRTNSLETQGL----VQVGYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRES 395 +T GL V+ Y+ ++ + + + + L + + +D Sbjct: 971 -------TQTVGLNKDIVEGQYELIDDVIFANTFFALEETGL----AYPCLPMD------ 1013 Query: 396 NFTQLDDELKNWIGSRFSSKFVRNPESKDPEDNQNRRW---PQIRNGNVSHRLAKLLMLG 452 + D L W+ R + R +++ + N+ + W P + NG + + Sbjct: 1014 ---EDDQALDAWL--RVFASAYRVKDNRYFDKNKVKLWQKGPDVTNGRIKK-----VARA 1063 Query: 453 AGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTF-SLITDAWICPV 511 +T + + G L G F + K + D W C Sbjct: 1064 LYGETRYGDELTRV-----------LGEFERLGHRGGLFNIGKLALKVTEPGDDFWRCSN 1112 Query: 512 TNKI-----LDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAE 566 ++ L + + P E L + + ++ Sbjct: 1113 CERVHLHRGLGVCTRCVAPLHEPSGKVEALWETNFLGRRIVRGE----------RDGVGR 1162 Query: 567 GLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFK 626 + + D +DR+ + + + + EK+ Sbjct: 1163 FRLRVEELTGQTD------------DFSDRLRKFKGIFV----------DDVSELEKL-- 1198 Query: 627 NGQLNVLNCSTTMEMGVDTDRVMTLASRSQQAT 659 ++++L+ +TTME+G+D + T+ + Sbjct: 1199 ASEIDMLSVTTTMEVGIDIGALQTVYQANMPPQ 1231 >UniRef50_B4V8K6 DEAD/DEAH box helicase domain containing protein n=1 Tax=Streptomyces sp. Mg1 RepID=B4V8K6_9ACTO Length = 1763 Score = 69.9 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 94/662 (14%), Positives = 187/662 (28%), Gaps = 92/662 (13%) Query: 232 DLEKLAARAKQAREQAEEYRSWGM-PDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTW 290 D KLA ++ R A S + + + ++ + + L + + Sbjct: 588 DFAKLATLDQEGRSSATSLISASVVKSLKAVPEEALDKEARKLLTFVDNRQDASLQAGHF 647 Query: 291 TEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQ 350 + V + R + L+ P E R E Sbjct: 648 NDFVQITQLRGALYRAALEAGEDGIPHE-----------------ELATR-----VGEAL 685 Query: 351 GLVQVGYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGS 410 L V Y G ++ +P + TL D F + L+ + + Sbjct: 686 ALGLVDYTGESEL--APSIARAAAKTLRDVIAF-----------RLYLDLERGWRITM-P 731 Query: 411 RFSSKFVRNPESKDPE--DNQNRRW----PQIRNGNVSHRLAKLLMLGAGFKTVNAAT-- 462 + + +D + + RW ++R + + R + L + A Sbjct: 732 NLEQTGLLEIDYEDLDWVAAKQDRWDGTHEKLRTADSALRAEIMKALLNEMRRSLAIDVS 791 Query: 463 --IDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITD------------AWI 508 D + + + +L P + D + H + + ++ Sbjct: 792 YFRDDFDALQRASEERLVDPWVLSASDRPKVGTAYPHPSGKGMDRSALFLSARGKFGKYL 851 Query: 509 CPVTNKI--LDTAFKG--LTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDY 564 C K LDT + L + A + P + + Sbjct: 852 CRADRKFKELDTDELQLVIEQLLKVLAKAGLVKEVSEAPQRAGRFRRPTGPAMIGYRVAA 911 Query: 565 AEGLAKAR--DWVSHDPLIAQL------RSENVWTDINDRVVEGGFYYRTAEHSAQQSSE 616 + +A + +HDPL R + ++ EH+AQ S + Sbjct: 912 QSLVWRAGKGETGTHDPLTRTYQSGDGPRVNTFFRELYKDAAGALAGLFAREHTAQVSPQ 971 Query: 617 RLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIP--------GPEWHLN 668 + E+ F+ +L +L CS TME+GVD + + R+ T Sbjct: 972 EREQREEAFRKAELKLLYCSPTMELGVDISSLNAVMMRNVPPTPANYAQRSGRAGRSGQP 1031 Query: 669 DELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHE 728 + + + F + + + + + S Q W + Sbjct: 1032 ALVTTYCATGNSHDQYYFRRSERMVAGAVAPPRLDLANE-DLVRSHL-QGIW--IAEAGL 1087 Query: 729 EAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKTKLTDGAEVT----LDTLFKDK 784 + + + + V Y D + L L IL K V + Sbjct: 1088 KLGRAIPD--VLDVSYPDTGERPAPDLNLHPEILAASLDKDAQRRTVDASQRVLGPLLPD 1145 Query: 785 DRPGNRPFHDWMSIADFQDFADQWFAAALGRPVELTVFD-SPRDIPHHRKLTVTFEDGQV 843 + +W I D + F A R +L + I + R+L + +G Sbjct: 1146 FADTTWWYDEW--IQDQVRTVPERFNRAFDRWRKLFTSALDDQFIQNRRRLDYSLTEGDR 1203 Query: 844 LK 845 ++ Sbjct: 1204 IR 1205 >UniRef50_A8MHW5 DEAD/DEAH box helicase domain protein n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MHW5_ALKOO Length = 1903 Score = 68.8 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 106/718 (14%), Positives = 205/718 (28%), Gaps = 140/718 (19%) Query: 13 SPVYEVAFCNDCNE-----------------------PHLLARDKKGKLVQWENKGGDEF 49 S V EV +C C P+L K V E + DE+ Sbjct: 604 SRVLEVLYCEHCGTVFYGGTRLVDKQEANTYEMHITTPNLEGIPDKQLSVMVEQRKYDEY 663 Query: 50 SLQDEVPVEHDATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIP 109 + D ++ + ++ F P + Y L + + V ++ Sbjct: 664 -MVFWPFPREDLHKDSEKWKHEFSAPNGRGTVTAQWSQYKLNIYSGRVKSSKVNQTETDS 722 Query: 110 LIIN---------------DIEQVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVL 154 I + C + Y + P R G + Sbjct: 723 WINGQLYITKKKENEQFIDALPNRCPSCATDYSKRNRISPIRGFRTGFSKISQIFTKELF 782 Query: 155 EYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEI 214 + + T R+L+ FTDSR+ A++A +++ LR +++ Sbjct: 783 QQIPEDTD----------------RKLVIFTDSREDAAQVANGVERNHYSDLLREVMIKT 826 Query: 215 LSWH-----QRTQTSTAPNANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQA--- 266 + + + + E+ + + ++ + + L Sbjct: 827 IKDEVTLAPEILEAIESGREYTQEEQDRIKNNKVIKEDLLKKLGKINAYKSLPPEHRMAL 886 Query: 267 -EQLEQAYQAATGGKAATILVSRTWTEMVNELKERAD------IRGPVLQYNHYLKPEVF 319 +LEQ + K +++++V+ ++ I + + L + F Sbjct: 887 ESELEQLEREIEEIKENGKSRIISFSQLVSNDYKQCGKLIQELISLGINPCGNDLDKQKF 946 Query: 320 NENGGPLKLSEMLLFREFMRR---P-------KRTNSLETQGLVQV----GYQGLEKIHK 365 N E+ F + P K N+ + ++ Y GLE Sbjct: 947 YWNNAEHDWIELFDFETKSWKNNLPVDADEAKKIINNTLSYNFGRLFFGTLYFGLESSGL 1006 Query: 366 SPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVRNPESKDP 425 + L + D L ++L F Q+ D +G R+ + + Sbjct: 1007 GIIKIAYNNEQLKPFADRLGMSL------QTFEQICDSYLRILGERYRYLPQKPVFN--- 1057 Query: 426 EDNQNRRWPQIRNG----NVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPL 481 RW +I + + + A +I +L E L L Sbjct: 1058 ------RWKKIWQDQFVVDDFPDYTSISASLKTYIRKVAENYNIHEEYLGE---TLINAL 1108 Query: 482 AVLKPDGNRFYLPKEHMTFSLITD-AWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQ 540 + + +P ++ ++ D W C K H S T Sbjct: 1109 RAFGHNNVKINIPNINIKLAIKEDPIWQCSKCKKY------------HLHFSAGVCTKCG 1156 Query: 541 YDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEG 600 D EIW + + R L E + T D E Sbjct: 1157 NDLDEKATGICEEIWSNNYITQAVLSDRESIR-----------LHCEEL-TAQTDNQSER 1204 Query: 601 GFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQA 658 +++ +RL K ++VL+ +TTME+GVD + T+ + Sbjct: 1205 QRFFKGM----ILDEDRLYK-----KVNNIDVLSVTTTMEVGVDIGNLQTVMLANMPP 1253 >UniRef50_C6CEX4 DEAD/DEAH box helicase domain protein n=3 Tax=Gammaproteobacteria RepID=C6CEX4_DICZE Length = 1948 Score = 67.2 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 91/708 (12%), Positives = 197/708 (27%), Gaps = 175/708 (24%) Query: 15 VYEVAFCNDCNEPHLLAR--DKKGKLVQWENKGGDEFSLQDEVPVEHDAT---------- 62 ++E+ +C C + L + GK ++ + +L + E+ Sbjct: 640 LFEMLYCEACGDLLLGGQKGQNHGKTIELLPSATNLENLPERPGAEYYDDMTLEEFAVFW 699 Query: 63 ------------EEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRI---GVINNDS 107 E+ + + ++ T D + I Sbjct: 700 PVDIAGRPPVGCEKGWDVWEKAALNPVTGIVTIAQETST-TNTDAVRGYLYFQNPIKPKK 758 Query: 108 IPLIINDIEQVCSASGCGYR------GMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFT 161 Q CG + P R G + + E Sbjct: 759 GEPAKTPSAQPFCCPNCGIDYSSRPASNRSRTPIRAFRTGVTKSSQLVATELFELLHAIG 818 Query: 162 SDEGKEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRT 221 ++ I F+DSRQ A MA+ +++ R LR ++ S Sbjct: 819 AEAKS---------------IVFSDSRQDAASMALEIERLHLRD-LRREILVAASRAMIK 862 Query: 222 QTSTAPNANADLEKLAARAKQAREQAEEYRSWGMPDQA---------------KLSQAQA 266 + + ++ D+E A+AKQ+ + E R + KL +++ Sbjct: 863 EAESGYISDEDIEDRKAKAKQSGDYDEYIRLHDLQKSQSGITELCKYRRIKIDKLLESEG 922 Query: 267 EQLEQAYQAATGGKAATILVSRTWTEMVNELKERADIR--GPVLQYNHYLKPEVFN---- 320 + + + G + E + + I+ G + E Sbjct: 923 DSIGRITSELVGLGISPYKYRSNSDENDSAVWHTNFIKEGGTIRFSERLPSHERMKIKTK 982 Query: 321 -ENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGLEKIHKSPLHWQEKGLTLDD 379 + +++ F +LE GL Y + P +D Sbjct: 983 ISYDQSELIDDVIFANTFF-------ALEETGLA---YPCISDKDDMPE--------IDA 1024 Query: 380 WRDFLKVTL-DHYVRESNFTQLDDELKNWIGSRFSSKFVRNPESKDPEDNQNRRWPQIRN 438 W L+V + V+E+ + ++G KD E + +R ++ Sbjct: 1025 W---LRVFSGAYRVKENKYFDASRTRDWYVG-------------KDVEKEKVKRVARVLF 1068 Query: 439 GN--VSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKE 496 G+ L ++L + + +IN + +L Sbjct: 1069 GDSGYQDGLTRILNQLSLLE----HKAGLINI--------------------GKLFLKIS 1104 Query: 497 HMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWK 556 W C +I L + + V ++ Sbjct: 1105 K----PGDHYWQCGKCGRI---------------------HLHLGFKYCTRCVNALDLEP 1139 Query: 557 LDRSQEDYAEGLAKARDWVSHDPLIAQLRSE-----NVWTDINDRVVEGGFYYRTAEHSA 611 ++ + E R + + R D +DR+ + + Sbjct: 1140 SGIVEDLWEENFLGKRIVRGERDGVKRFRLNVEELTGQTDDFSDRLRKFKGIFV------ 1193 Query: 612 QQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQAT 659 +++ EK+ + ++++L +TTME+G+D + ++ + Sbjct: 1194 ----DKMSELEKL--DSEIDMLAVTTTMEVGIDIGSLQSVYQANMPPQ 1235 >UniRef50_C3Q570 Helicase n=1 Tax=Bacteroides sp. 9_1_42FAA RepID=C3Q570_9BACE Length = 1728 Score = 66.8 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 2/87 (2%) Query: 590 WTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVM 649 + + + +H+ Q + + E+ F+NG+ VL CS TME+G+D + Sbjct: 937 FQNFYKNIPLSNINLEAKDHTGQVPKDEREKREQQFRNGEFPVLYCSPTMELGIDIKDLS 996 Query: 650 TLASRSQQATIPGPEWHLNDELVVRSL 676 + R+ T + RS Sbjct: 997 IVGMRNVPPTP--ANYTQRAGRAGRSG 1021 >UniRef50_A6DRF3 Putative helicase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DRF3_9BACT Length = 1813 Score = 66.5 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 53/395 (13%), Positives = 124/395 (31%), Gaps = 50/395 (12%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLARDKK------GKLVQWEN----------- 43 +Y + C+CG+ V ++ C C + L K LV + Sbjct: 554 LYTQPKLVCNCGARVLDLLLCKSCGDIFLGGYRSKLNEKKVEYLVHGQPNLEQIPATMTA 613 Query: 44 -KGGDEFS-LQDEVPVEHDATEEKVEKENSFQPPLIIAAGETSEAGYT----LQRLDRQT 97 + E++ L P E+ + + + L E + + ++ + Sbjct: 614 KELYGEYAVLWLGKPGENKPIDNAWTETSGEVNKLNCTWKEANYNAFKGRVEPGKIGANS 673 Query: 98 RRIGVINNDSIPLIINDIEQVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYC 157 + +N + N C G + V + +L+ Sbjct: 674 YLFSITSNKTKKYDYNCQAMPNKCPQCDSDGRRKDGKSFPPVGLHRTAVQRVNQLLLDAL 733 Query: 158 QDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSV---VEI 214 DE + +L+ FTDSRQ A++A ++ + R +R S+ + Sbjct: 734 FREFDDEQAK------------KLVVFTDSRQDAAKLAAGIELDHYRDLVRQSLMQGFDK 781 Query: 215 LSWHQR-----TQTSTAPNANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQL 269 L + + + + + ++ + + + + A + + +Q+ Sbjct: 782 LGGDKGIALKYLEAGSPKDFTEEEKEQFKDFRARDSKLFNAIRDFLDEMAS--EEELKQI 839 Query: 270 EQAYQAATGGKAATILVSRTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLS 329 EQ +G + + W ++++ A K + +GG + S Sbjct: 840 EQLKDKKSGPYPMGRVTNLVWEDLLSLGVNPAGPNPS-----RQTKKVKLDADGGYVTTS 894 Query: 330 EMLLFREFMRRPKRTNSLETQGLVQVGYQGLEKIH 364 L R+P+ ++ + + L++ Sbjct: 895 WRELIDWEGRKPENKDAFDLLPQAKTLKNELDQAA 929 >UniRef50_D0LMZ5 DEAD/DEAH box helicase domain protein n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LMZ5_HALO1 Length = 1861 Score = 65.7 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 4/68 (5%) Query: 597 VVEGGFYYRTAEHSAQQSSERLQSYEKMFK----NGQLNVLNCSTTMEMGVDTDRVMTLA 652 + G EH+AQ + + E+ FK +NVL+CS T+EMG+D + + Sbjct: 1068 LEARGSALVAGEHTAQVTGSQRIELEEDFKAPPARSPVNVLSCSPTLEMGIDVGGLDAVV 1127 Query: 653 SRSQQATI 660 R+ Sbjct: 1128 LRNVPPRP 1135 Score = 46.4 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 52/277 (18%), Positives = 82/277 (29%), Gaps = 29/277 (10%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHL---LARDKKGKLV--QWENKGGDEFSLQDEV 55 +Y C CG + C C L D + + + E G E+ L D Sbjct: 566 LYARGEDTCRCGRATAPLYLCRSCGADALRFRGGEDPETEALAPHAERGGEGEWMLYDRG 625 Query: 56 PVEHDATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDI 115 +E + + ++ + Y D T G + P+ + Sbjct: 626 RLEQSTDD---DDFSALARVTQMKRRPVVHGTY-----DPVTG--GFSRSGGYPVDVALA 675 Query: 116 EQVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLP 175 + CG LG V + ++E Sbjct: 676 PARNTCLVCGATA-GAGSILTPVALGTSAAVRVLAEGLVESLDIQHQTNPA--------H 726 Query: 176 GRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEK 235 RL+ F+DSRQ A A + R+R VV +L QT + L Sbjct: 727 DGKERLLIFSDSRQDAAHQARFITYAGRYDRMRRRVVALLREASAPQTL-----SQILAG 781 Query: 236 LAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQA 272 L AR +AR+ R + Q +A E+A Sbjct: 782 LLARGVRARDNPHTQRYDDPGYLPRAVQQRARAWEEA 818 >UniRef50_C6BED1 DEAD/DEAH box helicase domain protein n=2 Tax=Betaproteobacteria RepID=C6BED1_RALP1 Length = 1770 Score = 65.7 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 112/771 (14%), Positives = 209/771 (27%), Gaps = 177/771 (22%) Query: 15 VYEVAFCNDCNEPHLLARDK---KGKLVQWENKGGDEFSLQDE-------VPVEHDATEE 64 ++ + FC +C + + D+ G++ + +E + +DE +P ++ Sbjct: 457 LFALHFCRECGQEYAPVWDESVAGGRIFNP--RSIEERTHEDEDIKSGYFMPDTTGIWDD 514 Query: 65 KVEKENSF------QPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQV 118 +++ L + + R+D + + Sbjct: 515 TLDRYPETWLEQKKDGDLKLKSNYRKRQP-QPVRVDATGQHVADGTPGWYI-----PGSF 568 Query: 119 CSASGCGY-RGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGR 177 CG +GK+ R L G + T+L E L Sbjct: 569 GFCLNCGVVHQTAGKESLRLTGLSGE--GRSSATTMLTLSALRYLYEED-----AQLKDE 621 Query: 178 GRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLA 237 ++++ FTD+RQ A +Q L+ + Q+ N + Sbjct: 622 AKKVLGFTDNRQDAA-----LQVGHFNDFLQVLLQRAALLAAVEQSGGRLNEGEISHAVF 676 Query: 238 ARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNEL 297 + R++ R+ M + A+ Sbjct: 677 SALGFDRDE-PGVRAEYMQEPEVKGNARR------------------------------- 704 Query: 298 KERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGY 357 + D+ + Y Y P +LE GLV + Y Sbjct: 705 -QVQDVMRAIFGYRVYFDLRRGWRFNNP--------------------NLEQLGLVHIEY 743 Query: 358 QGLEKIHKSPLHWQEKGLTLD-----DWRDFLKVTLDHYVRESNFT---QLDD-ELKNWI 408 Q ++K+ W + L L + L + D +R+ LD EL Sbjct: 744 QDIDKLAADVSEWADAPLILQAASAAVRKRLLTLLFD-AMRQGLCLASRFLDRTELDKLK 802 Query: 409 GSRFSSKFVRNP-ESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIIN 467 + F+ +R P + E W I G + + + DI Sbjct: 803 TASFA--NLREPWGFTEDEAPVAANW-FITTGRPRDEDRRNIEYLVSGSARSKLGKDIKR 859 Query: 468 TWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYL 527 W V + R P KI D ++ + L Sbjct: 860 A---STWQ------EVDQDGTKRDN-----------------PHAVKIKDDDYREIVAAL 893 Query: 528 PTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSE 587 L +++ F ++L+ + + G K++ + L Sbjct: 894 LKAAKSYGLVVSEETEFGM------TGYQLNGTGLVWVLGGGKSKRAADDNAFFRSLYGN 947 Query: 588 --NVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFK------------NGQ---- 629 + + R+ + + EH+AQ E E F+ G+ Sbjct: 948 IAGMLANPVHRLFD----FEAREHTAQVEQEDRLEREARFRFTQKDRNDWLNAKGKQLEW 1003 Query: 630 LNVLNCSTTMEMGVDTDRVMTLASRSQQATIP--------GPEWHLNDELVVRSLGYKTV 681 L VL CS TME+GVD + T+ R+ T ++ Sbjct: 1004 LPVLFCSPTMELGVDISSLNTVYLRNVPPTPANYAQRSGRAGRAGQPALVITYCAAQSPH 1063 Query: 682 ELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQS 732 + F P + +H Q+N P R Sbjct: 1064 DQYFFRDPVRM-----------VHGQVNPPTLDLANRELIQSHLHAIWLAE 1103 >UniRef50_UPI0001C16AE3 DEAD/DEAH box helicase domain protein n=2 Tax=Nostocaceae RepID=UPI0001C16AE3 Length = 1786 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 48/134 (35%), Gaps = 5/134 (3%) Query: 554 IWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQ 613 +WK E + L+ R D I R + + + EH+ Q Sbjct: 990 VWKFSILTEIPPDPLSSKRLQGQEDVKIPVNR---FFQEFYQTNAQKIQAMEGREHTGQV 1046 Query: 614 SSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVV 673 ++ Q E+ F+ G+L L CS TME+G+D + + R+ + + Sbjct: 1047 KAQARQEREERFRKGELASLFCSPTMELGIDISDLSVVHLRNVPPSP--ANYAQRSGRAG 1104 Query: 674 RSLGYKTVELNEFI 687 RS V I Sbjct: 1105 RSGQEALVITYAAI 1118 >UniRef50_Q7NH01 Gll2736 protein n=2 Tax=Cyanobacteria RepID=Q7NH01_GLOVI Length = 1887 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 10/81 (12%) Query: 590 WTDINDRVVEGGFY------YRTAEHSAQQSSERLQSYEKMFKNG----QLNVLNCSTTM 639 W D D Y EH+AQ + E FK ++N+L CS T+ Sbjct: 1079 WVDAEDNRTVRRIYSEQFVPLIAREHTAQIPGDIRVQLENDFKASAEVSKVNLLACSPTL 1138 Query: 640 EMGVDTDRVMTLASRSQQATI 660 EMG+D + + R+ Sbjct: 1139 EMGIDVGGLDAVILRNVPPRP 1159 Score = 49.9 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 38/230 (16%), Positives = 68/230 (29%), Gaps = 21/230 (9%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLARDKKGK-----LVQWENKGGDEFSLQDEV 55 +Y + C+C + + C +C +L +Q +E+ Sbjct: 579 LYPMGEERCECSASTAPLYLCRNCGADYLRFVGGNPNDPAAGPLQPSASNSEEYEWLLYD 638 Query: 56 PVEHDATEEKVEKENSFQPPLIIAAGETSEAGYTLQRL------DRQTRRIGVINNDSIP 109 P + T + E+E + + + QRL D T V Sbjct: 639 PARFELTADIEEEEEEAGNNTLQRSRSRRQPTQMRQRLVREGSFDPHTLAFSVDTTTYPL 698 Query: 110 LIINDIEQVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGV 169 + G G LG V + ++E + + Sbjct: 699 RATLAPARTQCLCCGGSAGSRNV--ITPVALGTSAAVKVMGEGLVEALAEENKNRPN--- 753 Query: 170 GPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQ 219 RL+ F+DSRQ A A + + R+R +V +L+ H Sbjct: 754 -----HDGKERLLVFSDSRQDAAHQARFIHFASRYDRMRRRIVRLLNGHG 798 >UniRef50_D2QY08 DEAD/DEAH box helicase domain protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QY08_9PLAN Length = 1845 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 8/112 (7%) Query: 604 YRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIP-- 661 EH+AQ E + E+ F + +L VL CS TME+GVD ++ + R+ T Sbjct: 961 LEAREHTAQVPYEERERREQDFGSAKLPVLYCSPTMELGVDIRQLNVVNMRNVPPTPANY 1020 Query: 662 ------GPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQ 707 ++ + + F P + + + + Sbjct: 1021 AQRSGRAGRSGQPAFVLTYCTSGSSHDQYFFRQPERMVAGAVSPPRLDLANE 1072 >UniRef50_A4VQ18 Putative helicase n=1 Tax=Pseudomonas stutzeri A1501 RepID=A4VQ18_PSEU5 Length = 2110 Score = 64.9 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 82/513 (15%), Positives = 153/513 (29%), Gaps = 84/513 (16%) Query: 179 RRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAA 238 ++LI F+DS Q A A + R LR ++ +++ + P A+L A Sbjct: 628 KKLIAFSDSVQDAAHRAGFLAARTWRMNLRPALTQVI---AAADATGQPLTLANLPAAFA 684 Query: 239 RAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELK 298 + + Y + +P Q + + +E+ + + + W + E Sbjct: 685 QRWRTALGDGHYIANFLPPQMQWLRDYETLMEEGVLPESSKLPSELARLLPW-VLNAEFG 743 Query: 299 ERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQ 358 + A I ++ + ++ LL P+ ++LE Sbjct: 744 QDAHIGRTLVATGTACVVPLAGRLDEA---AQWLL-------PRVRDTLEPLAAA----- 788 Query: 359 GLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNF---TQLDDELKNWIGSRFSSK 415 L ++ E + WRD L Y R + + + + S + Sbjct: 789 QLAEVVVLLRGLLENMQRIGAWRD---PELGFYARMGSSPWVYKKNPSQFKLLTSPRPPR 845 Query: 416 FVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWA 475 F+ PE + RL + + + + A Sbjct: 846 FLTLPEFGRC----------VSITKSHARL------FSDWAFKALPALHDVALGTDALIA 889 Query: 476 QLTGPLAVLKPDGNRFYLP-KEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFE 534 L R L E + DA T K D GL P Sbjct: 890 AL-----------YRLALEALESAGLAGFEDA-----TEKP-DIRVWGLEP----SAFHV 928 Query: 535 HLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDIN 594 L + T+ ++D+ E + + V + L D Sbjct: 929 VLGGKTWRCDRCHGTTL------SGPEDDFTEQVCRR---VDCRGELQALEVPG---DFY 976 Query: 595 DRVVEGGFYYR--TAEHSAQQSSERLQSYEKMFKN-----GQLNVLNCSTTMEMGVDTDR 647 ++ R EH+ E ++ E+ FK+ G +NVL+ + T+EMG+D Sbjct: 977 RKLYLNADIQRVVAHEHTGLLPRETREAVERNFKSNSDRPGGINVLSATPTLEMGIDIGD 1036 Query: 648 VMTLASRSQQATIPGPEWHLNDELVVRSLGYKT 680 + ++ S + RS G Sbjct: 1037 LSSVLQCSVPPQQ--ANYIQRAGRAGRSTGNAL 1067 >UniRef50_A1W4A0 DEAD/DEAH box helicase domain protein n=4 Tax=Proteobacteria RepID=A1W4A0_ACISJ Length = 1765 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 109/736 (14%), Positives = 199/736 (27%), Gaps = 197/736 (26%) Query: 15 VYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHDATEEKVEKENSFQP 74 +Y FC DC + +L + + D+ S D +E+ Sbjct: 458 LYPAHFCRDCGQEYLPIWQSGQHPTIYLPREIDDVS--------ADDSEDASYGFLCPVN 509 Query: 75 PLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQV---------------- 118 P G+ + T L R +I +IP + Q Sbjct: 510 PKQPYTGQLEDLPETWLDLSRNEPKIKPAYKKAIPYHVAVDPQGHEGAGEAFWFIPGKFR 569 Query: 119 -CSASG--CGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLP 175 C + G G + + G T I + L+ + + Sbjct: 570 FCLSCGTVHEAHGKDANRLSSLSGEGRSSATTMIALSALQQLFALPNPAHGQPDP----- 624 Query: 176 GRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEK 235 R+L+ FTD+RQ A A + + + D E+ Sbjct: 625 ---RKLLGFTDNRQDAALQA---------GHFNDFIFLLTLRAGLIGALQDNSGVLDEEQ 672 Query: 236 LAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVN 295 LA E + +G DQ L + + A T+ + + Sbjct: 673 LA-------EAVFKALGFGQVDQGTLVEYLRS--PKLMGPARQQAQRTLRFIIAYRLL-- 721 Query: 296 ELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQV 355 + + Y P +L+ GL+ + Sbjct: 722 ---------RDLRRGWRYNNP-----------------------------NLDQLGLLSI 743 Query: 356 GYQGLEKIHKSPLHWQEKG----LTLDDWRDFLKVTLDHYVRESNFTQ------LDDELK 405 Y+GL++ + + L D + D ++R + ++ + Sbjct: 744 RYRGLDEFCADTGAFAKNKVLAKLKPADRARLCNLLFD-HLRSHLCLETRYLDPVEHDKA 802 Query: 406 N-----WIGSR--FSSKFVRNPESKDPEDNQ--NRRWPQ--IRNGNVSHRLAKLLMLGAG 454 ++ R F+ + + P+ + G RL +L+ + Sbjct: 803 RTSGHTYLTERWAFAPDEKLETGRYLILGKRPEYKGKPRADLVTGGPRSRLLRLVKTSSL 862 Query: 455 FKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNK 514 ++ W W +L L+ A C V Sbjct: 863 WQDS--VFATETKHWKDTEWVELVQD---------------------LLHAASNCYVQKY 899 Query: 515 ILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDW 574 +DT G W+L+ + D+ + +D Sbjct: 900 AIDTDLAG--------------------------------WRLNAAALDWCLTAEQPQD- 926 Query: 575 VSHDPLIAQLRSENVWTDIND--RVVEGGFY-YRTAEHSAQQSSERLQSYEKMFKN---- 627 + I E ++ I D R+ + + EH+AQ + R Q E+ F+ Sbjct: 927 --ENSRINTFFRE-LYLSIADLLRLPSHPLFEFEAQEHTAQVDAPRRQLLEQRFRYTDKD 983 Query: 628 --------------GQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVV 673 +L V+ CS TME+GVD + T+ R+ T + Sbjct: 984 RNDWAQNPAHEAPLERLPVMFCSPTMELGVDISALNTVYLRNMPPTP--ANYAQRSGRAG 1041 Query: 674 RSLGYKTVELNEFILP 689 RS V L Sbjct: 1042 RSGQQALVVTYCAALS 1057 >UniRef50_A9AUS0 DEAD/DEAH box helicase domain protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AUS0_HERA2 Length = 1695 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 8/111 (7%) Query: 605 RTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIP--- 661 + EH+ Q + + Q E+ F G L VL CS TME+G+D + + R+ T Sbjct: 940 ESREHTGQVAQAKRQDREQCFSAGTLPVLFCSPTMELGIDIGDLNVVHMRNVPPTPANYA 999 Query: 662 -----GPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQ 707 + + F V I + + Sbjct: 1000 QRSGRAGRSGQPALIETYCSVGSGHDQYFFDRQPAMVAGVVAPPQIDLVNE 1050 >UniRef50_B2JC69 Helicase superfamily 1 and 2 ATP-binding n=1 Tax=Burkholderia phymatum STM815 RepID=B2JC69_BURP8 Length = 2097 Score = 64.1 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 19/83 (22%) Query: 594 NDRVVEGGFYYRTAEHSAQ-------QSSERLQSYEKMF-----------KNGQLNVLNC 635 ND+ + EH+AQ Q+ R + YE F + G ++VL+C Sbjct: 1137 NDQGYVPYP-FVAEEHTAQLNDAGQDQAFSRAEWYELRFQDLDVPGPRGERAGAVDVLSC 1195 Query: 636 STTMEMGVDTDRVMTLASRSQQA 658 +TTME+G+D + +A R+ Sbjct: 1196 TTTMEVGIDIGSLTAVALRNVPP 1218 Score = 56.1 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 37/217 (17%), Positives = 70/217 (32%), Gaps = 32/217 (14%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHD 60 +Y + C C + V+EV C DC + A + + E Sbjct: 656 LYPQSTRECGCRARVFEVHTCRDCGVAYFQA-----YALNPAQPDF--------LWAEDV 702 Query: 61 ATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDS------IPLIIND 114 E V+ L+ G ++ T LD T R+G + + P + Sbjct: 703 GDLEDVDGVVRPVQILLEDPGFDADKYCTTAFLDPLTGRVGTQSTSARQIWLPRPTKNVE 762 Query: 115 IEQVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSL 174 C G + PF V +L+ + Sbjct: 763 PGHFEKCPHCEGNGSQVMN--HQTKGDEPFQELISV-QLLDQPARPEA----------VS 809 Query: 175 PGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSV 211 P +GR+ + F+D RQ +R++ +++ + + +R + Sbjct: 810 PLKGRKSLIFSDGRQAASRLSGKLKDFSLQDSIRPLL 846 >UniRef50_A1SC23 DEAD/DEAH box helicase domain protein n=3 Tax=Actinomycetales RepID=A1SC23_NOCSJ Length = 1741 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 27/55 (49%) Query: 606 TAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATI 660 EH+AQ E+ F+ G L +L CS TME+GVD + + R+ T Sbjct: 954 AREHTAQVPQSDRLEREEDFRTGDLPLLYCSPTMELGVDISDLNAVGLRNVPPTP 1008 >UniRef50_Q1IY46 ATP-dependent RNA helicase, intein and Vcr-like endonuclease domain n=2 Tax=Deinococcus RepID=Q1IY46_DEIGD Length = 1711 Score = 63.8 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 2/82 (2%) Query: 604 YRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGP 663 R+AEH+AQ +E + E+ F++G L L CS TME+GVD + + R+ T Sbjct: 943 LRSAEHTAQIKAEEREKREEAFRSGDLPALFCSPTMELGVDISDLNVVGMRNVPPTP--A 1000 Query: 664 EWHLNDELVVRSLGYKTVELNE 685 + RS V Sbjct: 1001 NYAQRSGRAGRSGQPALVMTYA 1022 >UniRef50_B9B1G2 Helicase n=1 Tax=Burkholderia multivorans CGD1 RepID=B9B1G2_9BURK Length = 1968 Score = 62.2 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 99/707 (14%), Positives = 198/707 (28%), Gaps = 154/707 (21%) Query: 6 RQNCDCGS----PVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHDA 61 R + C ++E+ +C C E + G+ E+ E L +E Sbjct: 664 RAHASCNDGETRRLFELIYCEACGELFV-----GGRRNSDEDSVTTEL-LSTAPNLEQLP 717 Query: 62 TEEKVEKENSFQPPLII---------AAGETSEAGYTLQRLDR-----------QTRRIG 101 + GET + LD +T + Sbjct: 718 ESAANTNYETLSYSQFAIFWPCRNEPKDGETDGEAWNPATLDTRNAVVTRAERHETTSLP 777 Query: 102 V----INNDSIPLIINDIEQVCSASGCGYRGMSGKQPFRRALLGG-----PFYVTNIVPT 152 IN + + CG R+ +G F + Sbjct: 778 GRLFYINPGTGSVHQPGSASPRCCPACGTDYSR-----RKPNMGAQSPLRSFRTGFAKSS 832 Query: 153 VLEYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVV 212 L + F++ G + I F+DSRQ AR A+ +++ + R +V Sbjct: 833 QLLATELFSALRVSGGAA---------KSIVFSDSRQDAARAALDIERRHHQDTRRQLLV 883 Query: 213 EILSWHQRTQTSTAPNANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQA 272 E L + S+ + +++ A + +A Q + ++ E Sbjct: 884 ESLRAVAAARPSSQQLRDMEVQLQQAVEARNFAEAGRLGQDIARAQQAVDASRVALSEVI 943 Query: 273 YQAATGGKAATILVSRTWTEM---------VNELKERADIRGPVLQYNHYLKPEVFNENG 323 + G R E+ + + + ++ KPE + Sbjct: 944 EPIVSAGGNELRSYLRRHVELGIHPTDAAGIELIAQEP-WYKWIVPSGASGKPEWPAHSE 1002 Query: 324 -GPLKLSEMLLFREFMRRP--------KRTNSLETQGLVQVGYQGLEKIHKSPLHWQEKG 374 G + + E +RP K +LE G +GY + + Sbjct: 1003 SGAAGQARAYIRDE--QRPLVYEILFSKTYFALEETG---IGYPSMTATQTPESDRLD-- 1055 Query: 375 LTLDDWRDFLKVTLD-HYVRESNFTQLDDELKNWIGSRFSSKFVRNPESKDPEDNQNRRW 433 +L+V D + V + + + + + P+ + R+ Sbjct: 1056 -------AYLRVFADAYRVAGNKWFRDPANIDT--------------AHQFPKKGRIYRF 1094 Query: 434 PQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYL 493 + S + L +A I+ L+G + G+ +Y Sbjct: 1095 ---AKASASSNPIEELDEILKRFGAHAHAHGIVE---------LSGLYVRMSSSGDPYYR 1142 Query: 494 PKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPE 553 L C + L +G+ + + TM Sbjct: 1143 CDNCGRVHLHRGTAFCTRCFEPLPVQKQGI-------------VDDLWKANFLARRTMRS 1189 Query: 554 IWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRS-ENVWTDINDRVVEGGFYYRTAEHSAQ 612 W + + + E L +LRS + ++ +N + YR AE Sbjct: 1190 GWGQESAFRLHCEELTG-----QTGSPAERLRSFKGIF--VNGGTSDAFELYRRAE---- 1238 Query: 613 QSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQAT 659 ++++L+ +TTME+G+D + + + Sbjct: 1239 ----------------EIDLLSVTTTMEVGIDIGALQAVYQANMPPQ 1269 >UniRef50_B5PIM9 Helicase n=2 Tax=Salmonella enterica subsp. enterica RepID=B5PIM9_SALET Length = 1982 Score = 61.8 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 92/647 (14%), Positives = 190/647 (29%), Gaps = 127/647 (19%) Query: 121 ASGCGYR---GMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGR 177 CG G P R +G + +++ Q + E Sbjct: 775 CPACGTSYKYGKGKLSPIRSFRVGFSKTTQLLASSLMAELQRSGNRE------------- 821 Query: 178 GRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLA 237 +L+TF+DSRQ AR A+ ++ R VV L P+ N Sbjct: 822 --QLVTFSDSRQDAARAALDLESGHHDDVRREIVVHSLQSIAA----DKPSHNQL----- 870 Query: 238 ARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNEL 297 + +QA + + ++ + + ++L + G + S ++ Sbjct: 871 -KIRQAEIEERNKTLINLNVRSDEEEDEMDRLADERKKIRGLLSKPETDSIPLRGILE-- 927 Query: 298 KERADIRGPVLQYNHYLKPEVFNENG--------GPLKLSEMLLFREFMRRPKRTNSLET 349 E D P+ + + P K E L F E Sbjct: 928 PESPDAGQPLGLLLRAQVDAGIHPSDRTGIAPVPDPEKYGEGTLT--FAW----QQLFEK 981 Query: 350 QGLVQVGYQGL----EKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESN--------- 396 + ++ L + + + L F K + ES Sbjct: 982 NAQGEWCWKALPSYEDNLLVARQEISRDLKRLVGESVFSKTY--FALEESGWGYPCLPIT 1039 Query: 397 ------FTQLDDELKNWIGSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLM 450 + D + + + + + + P + + N +R + + Sbjct: 1040 GNDSREHLAIYDAMFRVLADAYRVTPSQYTKPETPWSSA----HDVNRRNRLYRFTQAIC 1095 Query: 451 LGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLIT---DAW 507 +G + + +I+++L+ + + M F L W Sbjct: 1096 QRSGGEP-----LSLIDSFLR----------RLELAGHQGGIIDIGKMHFRLAEPTDRVW 1140 Query: 508 ICPVTNKI-----LDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQE 562 C +I + +P LP E TL Q ++ ++++ RS+E Sbjct: 1141 RCSRCGRIHMHIGAGICTRCYSP-LPETPGSEAKTL-QMQHYLGKRLSHSSGIHRMRSEE 1198 Query: 563 DYAEGLAKARDWVSHDPLIAQLRSENVW-TDINDRVVEGGFYYRTAEHSAQQSSERLQSY 621 ++ +P R + + D +D + EG + + + +R Sbjct: 1199 LTG---------MTENPAARLRRFKGILIADDDDILPEGMKDF-----APDRDLDRAARV 1244 Query: 622 EKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATI--------PGPEWHLNDELVV 673 ++VL+ +TTME+GVD + + + V+ Sbjct: 1245 --------VDVLSVTTTMEVGVDIGDLRAVFQANMPPQRFNYQQRVGRAGRRGQAFSFVL 1296 Query: 674 RSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFW 720 + K+ +L F P K T + + +L + ++ W Sbjct: 1297 TACRSKSHDLFYFRHPEKITGDLPPPPF--LTTKLEMICQRLVRKIW 1341 >UniRef50_B5J9Y0 Putative uncharacterized protein n=1 Tax=Octadecabacter antarcticus 307 RepID=B5J9Y0_9RHOB Length = 777 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 41/253 (16%), Positives = 84/253 (33%), Gaps = 34/253 (13%) Query: 16 YEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHDATEEKVEKENSFQPP 75 + + C C EP++ A D +L + + E+ P Sbjct: 383 FPLLVCRTCGEPYIEAWDDGRRLAALPPR---------------NNKGERTVLRLIGTAP 427 Query: 76 LIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIIND---------IEQVCSASGCGY 126 + E + +D +T I + I + + V + CG Sbjct: 428 AALDEEEDEDEKTEFVHIDPRTGSIEDDPGEGIISLQVAECVDDDHDRKKYVKACLACGE 487 Query: 127 RGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLITFTD 186 + + +P G T+LE + P +GR L+ F+D Sbjct: 488 KKGAFAEPLTTIYAGDESTSAMATQTLLEALPAKLDSDA---------PMQGRSLLAFSD 538 Query: 187 SRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQ-TSTAPNANADLEKLAARAKQARE 245 +RQ A A +++ + +RG++++ + + T+ + A L+K R + Sbjct: 539 NRQDAAFFAPFLERISRVEAVRGAIIDAVRSEEDLSITNLSAEVGARLKKHRFRVFDRGD 598 Query: 246 QAEEYRSWGMPDQ 258 Q+ + D+ Sbjct: 599 QSAPLSGTELKDR 611 >UniRef50_A1B283 DEAD/DEAH box helicase domain protein n=4 Tax=Alphaproteobacteria RepID=A1B283_PARDP Length = 1725 Score = 61.1 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 117/732 (15%), Positives = 213/732 (29%), Gaps = 132/732 (18%) Query: 12 GSPVYEVAFCNDCN-EPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHDATE-----EK 65 G+ +Y FC +C E H++ + +++ + D+ L E E + Sbjct: 450 GNRLYPTRFCRNCGQEYHVVTKVDDDGSLRFLPRSIDDTPLDTE---EDEVAGYLCPVTP 506 Query: 66 VEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIIND---------IE 116 + + F L E ++RL ++ ++ + Sbjct: 507 GDTDFQFTGELEGYPESWREEKNGIERLRGYRKKRMPVSYVVGADGRHGAGGNDFWFIPG 566 Query: 117 QVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPG 176 + C G + R L G + T+L ++ GV P Sbjct: 567 KFAFCLCCHDEPTQGMRE-RSKLAGLSGEGRSSATTLLVASALEWMNKPGSGV-----PE 620 Query: 177 RGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKL 236 R+L+ FTD+RQ A + S LRG+++ + A + Sbjct: 621 TKRKLLGFTDNRQDAALQSGHFNDFLFVSLLRGAILRAV--IAAGSGGLAEDEFGLQVVK 678 Query: 237 AARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNE 296 A A ++A ++ A + + L + +L R WT++ Sbjct: 679 ALGFTAANKEARQHWLLDSNAGAIIREDAQRSLAK------------VLAHRVWTDL--- 723 Query: 297 LKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVG 356 + + P SL L+ V Sbjct: 724 -----------RRGWRFTNP-----------------------------SLSVLNLIDVN 743 Query: 357 YQGLEKIHKSPLHWQE-----KGLTLDDWRDFLKVTLDHYVRESNFTQLDD-ELKNWIGS 410 + GLE+I + + L+L+ + LK L + E Q + +L G Sbjct: 744 FLGLEEISEDRERFMAIHPALGDLSLEQRQAILKAILSAML-EGLAVQTEALDLTVLDGV 802 Query: 411 RFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWL 470 S+ + + P + P+ R+ L + N T+ T L Sbjct: 803 AQKSRMLL----QAPWAIDQKENPRARS-----------SLVLRAGSKNVVTLREEQTLL 847 Query: 471 KEAWAQ----LTGPLAVL--KPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLT 524 + L +VL K + + +Y E M L + + PV LD+ G Sbjct: 848 RAGPNSRIARLVNRKSVLGMKLNKDEYYEFMEGMLVFLSEEGLLVPVE---LDSDVTGW- 903 Query: 525 PYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQL 584 L A D +++ S + H ++Q Sbjct: 904 -RLSPSAVRLVPGPALDDETHCGNRYFHDLYTAIASDLGDGRSSYWGLEGREHTAQVSQ- 961 Query: 585 RSENVWTDINDRVVEGG-FYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGV 643 + W + R + + T+E+ + R F L L CS TME+GV Sbjct: 962 -KQREWREWRFRFEQDDMDHLATSEYRTEI---RATGESDRF----LPALFCSPTMELGV 1013 Query: 644 DTDRVMTLASRSQQATIP--------GPEWHLNDELVVRSLGYKTVELNEFILPAKATNA 695 D + + R+ T +V + F Sbjct: 1014 DISALNAVYLRNVPPTPANYAQRAGRAGRSGQAAVVVTYCASGSPHDQYFFERRNDMVAG 1073 Query: 696 VERVKDIQIHKQ 707 V R + I + Sbjct: 1074 VVRPPALDITNE 1085 >UniRef50_B4S9Y6 DEAD/DEAH box helicase domain protein n=3 Tax=Bacteria RepID=B4S9Y6_PELPB Length = 1723 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 58/422 (13%), Positives = 133/422 (31%), Gaps = 84/422 (19%) Query: 326 LKLSEMLLFREFM--RRPKRT--NSLETQGLVQVGYQGLEKIHKSPLHWQEK----GLTL 377 L + LL+R RR R +LE L+ + Y+ L++I + W L Sbjct: 694 QALQDFLLYRSMADLRRSWRVVLPNLEQCALLTIEYEDLDEIIATDAFWAVSPLFGSLNH 753 Query: 378 DDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVRNPESKDPEDNQNRRWPQIR 437 D ++ + LD + R ++ F ++ + ++ + W R Sbjct: 754 TDRKELVTTILDFF-RLEYAIHSEN---------FLTQSRIQESERQFRESLKQPWTLDR 803 Query: 438 NGNVSHRLA---KLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLP 494 N + + L A T + + ++++ Y+ Sbjct: 804 NEKLQEPYYIRYQKLSKTAKLYTKSMGPASSLGKFIRD-------------------YVK 844 Query: 495 KEHMTFSLITDAW--ICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMP 552 ++++ L + + + T ++L+ A ++ Q + + ++ + Sbjct: 845 RQNLGIDLKKEGYKNLIMQTMEMLEQA---------DYLKSFPARSEQNEEVLIYRLRLE 895 Query: 553 EIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVW-TDINDRVVEGGFYYRTAEHSA 611 ++ + K R + P N++ + R R+ +H+ Sbjct: 896 KVIWKAGEGLTVKADIIKRRTYKKQRP------EPNLFFKTLYCRDFSTMKRLRSEDHTG 949 Query: 612 QQSSERLQSYEKMFK------NGQ------------LNVLNCSTTMEMGVDTDRVMTLAS 653 Q S+E E+ F+ G+ ++VL CS TME+GVD + + Sbjct: 950 QLSNEARLDREERFRADWYTDEGKRVADQQKIRAESISVLFCSPTMELGVDIGSLNVVHM 1009 Query: 654 RSQQATIP--------GPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIH 705 R+ + Y + + F + + ++ Sbjct: 1010 RNAPPNPSNYAQRSGRAGRSGQGALIFTYCSSYAPHDRHYFNNQRELVAGTVMAPRLDLN 1069 Query: 706 KQ 707 + Sbjct: 1070 NE 1071 >UniRef50_Q0YQW0 Helicase-like:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase-like n=2 Tax=Bacteroidetes/Chlorobi group RepID=Q0YQW0_9CHLB Length = 1757 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 8/108 (7%) Query: 608 EHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIP------ 661 EH+ Q S E F+ G++ L CS TME+G+D + + R+ Sbjct: 994 EHTGQLSHTDRIERENGFRKGEIAALFCSPTMELGIDIRELNVVHMRNVPPNPANYAQRS 1053 Query: 662 --GPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQ 707 + + N F K + +I + + Sbjct: 1054 GRAGRSGQAALIFTYCSNGSPHDRNYFKESKKMVSGAVVPPNIDLTNE 1101 >UniRef50_A5UPV6 DEAD/DEAH box helicase domain protein n=1 Tax=Roseiflexus sp. RS-1 RepID=A5UPV6_ROSS1 Length = 1711 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 74/431 (17%), Positives = 121/431 (28%), Gaps = 96/431 (22%) Query: 318 VFNENGGPLKLSEMLLFREFMRRPK-RTNSLETQGLVQVGYQGLEKIHKSPLHWQEK--- 373 E +F + R + +LE GL+++ Y L + WQ Sbjct: 695 RRRNEEVLTAYLEYRIFEDLRRSWRVTQPNLEQCGLLRIDYLDLHDLCADDRPWQRHPVL 754 Query: 374 GLTLDDWRD-FLKVTLDHYVRESNFTQ-------------------------LDDELKNW 407 T D R+ ++ LD ++R D+ K Sbjct: 755 AATPPDQRERTIRALLD-HMRRELAIDAPCLDPEQQPELLRRVDAALKEPWVFDEAEKRP 813 Query: 408 IGSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFK-TVNAATIDII 466 G R +++FV + + P R+ + R + L A + Sbjct: 814 NGLRMATRFVLPGDDTNV--------PGARSLSRYSRAGRFLRSSAAWSALEAPLDDQEY 865 Query: 467 NTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDA--WICPVTNKILDTAFKGLT 524 L + L G +L R L F + DA W+ T Sbjct: 866 AALLTTLFEILMGA-GILVDVTVRRGLR----AFQIRRDALLWL-----------PGDGT 909 Query: 525 PYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQL 584 P LP I + +T D +Q A A A Sbjct: 910 PPLPDPIRSQRMTTVARAA-------------SDDTQNGAARTPANA------------- 943 Query: 585 RSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVD 644 ++ R E EH+ Q + E Q E+ F+ G+L VL CS TME+G+D Sbjct: 944 ----FFSRFYLRPPERLLRIEGREHTGQVTQEDRQERERRFREGELPVLFCSPTMELGID 999 Query: 645 TDRVMTLASRSQQATIP--------GPEWHLNDELVVRSLGYKTVELNEFILPAKATNAV 696 + + R+ T ++ + F P Sbjct: 1000 IADLNAVHMRNMPPTPANYAQRSGRAGRSGQPALVITYCSTASGHDQYFFQRPKDMVAGA 1059 Query: 697 ERVKDIQIHKQ 707 I + + Sbjct: 1060 VAAPQIDLTNE 1070 >UniRef50_C8W5N0 DEAD/DEAH box helicase domain protein n=2 Tax=Peptococcaceae RepID=C8W5N0_DESAS Length = 1741 Score = 60.7 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 16/69 (23%) Query: 606 TAEHSAQQSS--------ERLQSYEKMFK--------NGQLNVLNCSTTMEMGVDTDRVM 649 T EH+AQ S R + YE F+ ++VL+C+TTME+G+D + Sbjct: 1058 TEEHTAQLSHKEIRSDTWSRTEKYEMRFQDINAGEHGEDAIDVLSCTTTMEVGIDIGSLT 1117 Query: 650 TLASRSQQA 658 + R+ Sbjct: 1118 AIGLRNIPP 1126 >UniRef50_B1ITR7 Helicase superfamily 1 and 2 ATP-binding n=17 Tax=Enterobacteriaceae RepID=B1ITR7_ECOLC Length = 2113 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 9/98 (9%) Query: 572 RDWVSHDPLIAQLRSENVWTDINDRVV---EGGFYYRT--AEHSAQQSSERLQSYEKMFK 626 + W + LR E + ++++ E R AEH+ S E ++ EK F Sbjct: 956 QGWQWRNAPCLSLRCEGRYQEVDNMATWRWENMDIARVQGAEHTGLLSREDREATEKSFY 1015 Query: 627 NGQ----LNVLNCSTTMEMGVDTDRVMTLASRSQQATI 660 G +N+L+ + T+EMG+D + T+ S Sbjct: 1016 RGNQPWNINLLSATPTLEMGIDVGDLSTVLLCSVPPAQ 1053 >UniRef50_A8EC51 Probable ATP-dependent helicase Lhr n=2 Tax=pseudomallei group RepID=A8EC51_BURPS Length = 1755 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 90/547 (16%), Positives = 150/547 (27%), Gaps = 134/547 (24%) Query: 171 PDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNAN 230 P LP + R+L++FTD+RQ A A S LRG++ L + Sbjct: 621 PSILPDK-RKLLSFTDNRQDAALQAGHFNDFTFVSLLRGAIYRALVRADEVGLGDS---- 675 Query: 231 ADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTW 290 +L A + A + + P+++ + E + R Sbjct: 676 ----ELGAAVRAALGFDQPLSATETPEESHRGEWMQE---------------PQSIGRNL 716 Query: 291 TEMVNELKERADIRGPV--LQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLE 348 + L+ R + Y P +LE Sbjct: 717 ADAEEALRFVLAYRAWFDQRRGWRYTNP-----------------------------NLE 747 Query: 349 TQGLVQVGYQGLEKIHKSPLHWQEK----GLTLDDWRDFLKVTLDHYVRESNFTQLDDEL 404 GL++ Y GL+ + + + R+ L Y+R+ Sbjct: 748 ELGLLRADYSGLQAFCSEEARFDKAADLLRKATPEARERAFRCLFDYMRKGLAVDAAALD 807 Query: 405 KNWIGSRF--SSKFVRNPESKDPEDNQNR-RWPQIRNGNVSHRLAKLLMLGAGFKTVNAA 461 N + R + + +RNP E+ RW ++ N + K L A Sbjct: 808 PNLLQQRKDEALRLLRNPWGIGREERLLGWRWLFLQPPNANALRGKDEELVLRGGLQTAL 867 Query: 462 TIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFK 521 + N+ L W A L+ D + L M + +I + T F Sbjct: 868 GKSLRNSTL---WE--QPAAANLRRDDYQTLLSA--MIRAAQDGGFI----RRDEHTLF- 915 Query: 522 GLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLI 581 +P P + + Q + K Sbjct: 916 ----NVPGFRLNAGRVRFHLGD---APGVRPNAFFKQQYQAIASMLGQK----------- 957 Query: 582 AQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQ------------ 629 DR + G EH+AQ E E F+ G+ Sbjct: 958 -------------DRFLFG---LEAREHTAQVDGELRALRESRFRFGKSEREALKDGELH 1001 Query: 630 ------------LNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLG 677 L ++ CS TME+GVD + + R+ T + RS Sbjct: 1002 DIAHKQGEPIRFLPLMFCSPTMELGVDISALNAVYLRNVPPTP--ANYVQRAGRAGRSGQ 1059 Query: 678 YKTVELN 684 V Sbjct: 1060 AALVVTY 1066 >UniRef50_C7HAN6 Putative helicase n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7HAN6_9FIRM Length = 2106 Score = 58.4 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 9/74 (12%) Query: 596 RVVEGGFYYR--TAEHSAQQSSERLQSYEKMFKNGQ-------LNVLNCSTTMEMGVDTD 646 R+ G R EH+ + EK FK + NVL+C+ T+EMG+D Sbjct: 967 RLYSTGDLARINAREHTGLLERPDREQLEKDFKRSKENRSNWDPNVLSCTPTLEMGIDIG 1026 Query: 647 RVMTLASRSQQATI 660 + T+ S Sbjct: 1027 DLSTVILCSMPPAQ 1040 >UniRef50_D0XMD3 DEAD/DEAH box helicase domain protein n=1 Tax=Brevundimonas subvibrioides ATCC 15264 RepID=D0XMD3_9CAUL Length = 1954 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 77/574 (13%), Positives = 159/574 (27%), Gaps = 95/574 (16%) Query: 104 NNDSIPLIINDIEQVCSASGCGY----RGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQD 159 + + CG R P R G + + E Sbjct: 761 DARDRAFGDRGSATPAACPACGTSYVLRSQGRSSPLRNFRTGFAKTSQLLATELFE---- 816 Query: 160 FTSDEGKEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQ 219 V P + I F+DSRQ AR AV ++ + R+ +R +V + Sbjct: 817 ---------VLHAPRPAVSPKAIVFSDSRQDAARAAVELEADHFRALIRDVIVRLTRERI 867 Query: 220 RTQTSTAPNANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGG 279 A + AA A+ +A ++ ++ + + T Sbjct: 868 DADYRAEDRATVEEAMRAAAAEMDYTEAARLKAILTQKESLAIETEPLTALAQDPDDTAY 927 Query: 280 KAATILVSRTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLF----- 334 A T ++++ L + +F +G LK + Sbjct: 928 LATTPAADPPMAQLISRLVRLGIHPSDSSVASDDEWWRLFTMDGENLKWARPSGALDANA 987 Query: 335 -----REFMRRPKRTNSLETQGLVQVGYQGLEKIHKSPLHWQEKGLTLD--DWRDFLKVT 387 RE + +T + + E P + + + + L+V Sbjct: 988 IQGKRREIAEEQREALH-DTL-FNKTYFSFEEAGLGYPTFFTRGEYSAERDELDALLRVL 1045 Query: 388 LD-HYVRESNFTQLDDELKNWIGSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLA 446 D + V S F + ++K W + + P N+ RR+ + + + Sbjct: 1046 ADTYRVDGSRFVDVS-QIKQWSSA-----------ADVPVGNRVRRFCEAASPGNGDQY- 1092 Query: 447 KLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDA 506 L + A + ++ + + + + D + + L A Sbjct: 1093 ----LNTALDRLRQADLGHNGGVVRL----FSLGVRLARADTPFWRCTRCDRA-HLHRGA 1143 Query: 507 WICPVTNKILDTAFKGLTPYLPTH-ISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYA 565 +C L G+ L H + A ++ E+ R + A Sbjct: 1144 QVCTRCGDPLPATAAGVAKDLWRHNFLAHRVDRAGTGAEEPFRLRSEELTGQTR---NGA 1200 Query: 566 EGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMF 625 E L + R + + R + Sbjct: 1201 ERLRRFRGILVEEGAGQAARLPKL------------------------------------ 1224 Query: 626 KNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQAT 659 ++++L+ +TTME+G+D + + + Sbjct: 1225 -GKEIDLLSVTTTMEVGIDIGPLQAVYQANMPPQ 1257 >UniRef50_C7MQ55 Helicase family protein with metal-binding cysteine cluster n=2 Tax=Actinomycetales RepID=C7MQ55_SACVD Length = 2082 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 64/374 (17%), Positives = 109/374 (29%), Gaps = 49/374 (13%) Query: 336 EFMRRPKRTNSLETQGLVQV-------GYQGLEKIHKSPLHWQEKGLTLDD------WRD 382 E R + +LE G + V Y L + + E+G++L D W Sbjct: 712 EIGLRSRLGRTLELTGALAVDYDMDLGRYATLARDAH--ENLPERGMSLPDREAYEVW-- 767 Query: 383 FLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVS 442 L + R Q D G+R+ + + R P + + S Sbjct: 768 LLGLLDRLRKRGGIAHQWLDAYVQRDGNRWPIWGGSPAGMQKF--PRGRPAPVFYSTSTS 825 Query: 443 HRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSL 502 L G + + + L P+ L +G L + Sbjct: 826 GDFDSLRPRGESWLV---DWTERCLEVGRAEARALLEPVVRLLAEGETPPLLRRTSQ--- 879 Query: 503 ITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQE 562 D A GL P I L ++ + + I + + Sbjct: 880 -------------TDAAVFGLDP---ARIELIPLNNSELEHAHLRCPKCHHIQPVAPKRF 923 Query: 563 DYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYE 622 D R + ++R +N + + + EH+A + E Sbjct: 924 DRWLSAPCPRMRCTGHLEPHRVREDNFYRRLYRSGRLRH--LVSHEHTALLDDDTRLEVE 981 Query: 623 KMFKNG----QLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGY 678 + F NG NVL C+ T+E+G+D + T+ S T + RS G Sbjct: 982 RRFSNGSSPIDPNVLTCTPTLELGIDIGDLSTVGLASLPPTP--ANYLQRVGRAGRSTGN 1039 Query: 679 KTVELNEFILPAKA 692 V P + Sbjct: 1040 ALVLATVPSSPREL 1053 >UniRef50_Q89AK2 Transcription-repair-coupling factor n=3 Tax=Gammaproteobacteria RepID=MFD_BUCBP Length = 697 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 69/198 (34%), Gaps = 19/198 (9%) Query: 611 AQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDE 670 Q S L+S F + + NVL CST +E G+D V T+ + H Sbjct: 396 GQLRSTDLESIMNDFYHKRFNVLVCSTIIETGIDIPNVNTIIIENANNFGLAQL-HQLRG 454 Query: 671 LVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRF----WDVLFND 726 V RS L L ++A +R+ I + FG F D+ Sbjct: 455 RVGRSQHQAYAWLLVPSLKDIKSDAKKRIDAIT-------SIESFGSCFELANRDLEIRG 507 Query: 727 HEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKTKLTDGAEVTLDTLFKDKDR 786 E + IT + ++ + + LL + +R +K ++T K + Sbjct: 508 IGEILGNNQSGHITKIGFS-------LYMKLLMNAVRNIKNGYYKPLNDIINTYPKIELN 560 Query: 787 PGNRPFHDWMSIADFQDF 804 N ++ + + F Sbjct: 561 VSNLLPDSYIKKVNHRLF 578 >UniRef50_A9VZE2 DEAD/DEAH box helicase domain protein n=2 Tax=Methylobacterium extorquens RepID=A9VZE2_METEP Length = 1754 Score = 57.6 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 54/188 (28%), Gaps = 40/188 (21%) Query: 604 YRTAEHSAQQSSERLQSYEKMFK---NGQLN-------------------VLNCSTTMEM 641 + + EH+AQ + E F+ G+ N VL CS TME+ Sbjct: 952 FESREHTAQVDKDLRLWREARFRWGDAGKRNLDVLRADQTNSLEADTFLPVLFCSPTMEL 1011 Query: 642 GVDTDRVMTLASRSQQATIP--------GPEWHLNDELVVRSLGYKTVELNEFILPAKAT 693 GVD + + R+ T +V + F + Sbjct: 1012 GVDISVLNAVYLRNAPPTPANYAQRSGRAGRSGQAALIVTYCAAQSPHDQYYFARREQLV 1071 Query: 694 NAVERVKDIQIHKQ------LNG---PLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHY 744 R I + + LN + R L + + L R Sbjct: 1072 AGSVRPPGIDLANRDLIEAHLNAIWLAKAGIDGRLRQELPDAIPDILDLDTPKRTVRTEI 1131 Query: 745 TDRYLQNP 752 TDR L NP Sbjct: 1132 TDR-LANP 1138 >UniRef50_A8KF74 Dead/deah box helicase domain protein n=2 Tax=pseudomallei group RepID=A8KF74_BURPS Length = 1787 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 51/283 (18%), Positives = 83/283 (29%), Gaps = 21/283 (7%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLA---RDKKGKLVQWENKGGDEFSLQDEVPV 57 +Y C+CG+ VYEV DC + L + G E Sbjct: 589 LYSEPMLKCECGARVYEVLTHRDCGAAFIRGYIQDQFGMFLWHQPSSGLWGTGGLMEAHF 648 Query: 58 EHDATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSI--PLIINDI 115 + + + T T + + ++ D + Sbjct: 649 LVEVDRRAAGTHGRMEGAQVWLHKATGRLVLTPPAEAELGQYLALLRPDGAVPISGQQAL 708 Query: 116 EQVCSASGCGYRGMSGKQPF--RRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDS 173 C C R +G PF +V T +E DS Sbjct: 709 SFNCECPVCTRRWRTGSTKIMDLATKGEAPF--AQLVRTQVELQPITHPKT-------DS 759 Query: 174 LPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVV---EILSWHQRTQTSTAPNAN 230 P GR+ + F+D RQ AR+A + +E E R ++ + L R T Sbjct: 760 SPNGGRKSLLFSDGRQKAARLARDIPREIENDVFRQLLLLAAKELRGLGREATLGDHIYV 819 Query: 231 ADLEKLAARAKQAREQA--EEYRSWGMPDQAKLSQAQAEQLEQ 271 A L LA A + A E + + + + L++ Sbjct: 820 ALLHVLAKNALLLFDGADRERLQRDVLDHRRHYLGELRDALDE 862 Score = 55.7 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 17/86 (19%) Query: 590 WTDINDRVVEG---GFYYRTAEHSAQQS-------SERLQSYEKMFKN-------GQLNV 632 + D + ++EG F EH+AQ S + ++ +E+ F++ ++V Sbjct: 1058 FRDPVNEILEGKASPFNLSVEEHTAQLSYRDVDDSTTTIEEFERRFRDILVERNDTSIDV 1117 Query: 633 LNCSTTMEMGVDTDRVMTLASRSQQA 658 L+ +TTME+G+D ++ + R+ Sbjct: 1118 LSSTTTMEVGIDIGSLIAVGLRNVPP 1143 >UniRef50_UPI000185C0CA conserved hypothetical protein n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185C0CA Length = 2117 Score = 56.8 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 108/771 (14%), Positives = 212/771 (27%), Gaps = 117/771 (15%) Query: 20 FCNDCN-EPHLLARDKKGKLVQWENKGGDEFSLQDE---VPVEHDATEEKVEKENSFQPP 75 +C +C + A + ++ K + S+ + P+ +E + Sbjct: 527 YCRNCGRSGWMTALAAGEESIETSGKKIRQQSIYNGFLMRPLLDATSEITSGHYRTEDES 586 Query: 76 LIIAAGETSEAGYTLQRLDRQTRRIGVINN--DSIPLIINDIEQVCSASGCGYRGMSGKQ 133 I E + + + G I D+ + S CG Sbjct: 587 AGIFWLNVREEQLSTSEPSEEEKEQGGIVPVLTYSGENTEDLAKKQSCPSCGETNSIR-- 644 Query: 134 PFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQGTAR 193 Y+ + V T+L G L ++ + F DS Q A Sbjct: 645 -----------YLGSSVATLLSVAISNLFGMGD-------LDDSEKKSLVFVDSVQDAAH 686 Query: 194 MAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARAKQAREQAEEYRSW 253 A +Q SR R + R P ++L + + Sbjct: 687 RAGFVQ-----SRARTF---AIRTRTRQMVGDTPIRLSELPSKLIDSTDQDSSPSRAKFE 738 Query: 254 GMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERADIRGPVLQYNHY 313 +P +Q + +A +L ++ E +R+D+ ++ Sbjct: 739 LLPPWVAENQRFRGFWDPLAGKKDRERATELLRDVLELDLALEFGDRSDLSRSLVSTGAL 798 Query: 314 LKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGLEKIHKSPLHWQEK 373 ++ + E+ + RE P E+ G V + + L + + Sbjct: 799 SVGVDVSDAELDEVIGELGMLREDS--PASQA--ESLGARDVAW------ARGILEYMRQ 848 Query: 374 GLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVRN--PESKDPEDNQNR 431 ++ + L+ L H + N L+ + G + P P + Sbjct: 849 AGGIE--TNLLRSYLKH---DGNAYLLNRREASARGIPKFPRGGAPSFPRVGKPLPTEKT 903 Query: 432 RWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRF 491 + + A+ T +AA ++ + K + G + Sbjct: 904 DYSFNPLSSARGAYARWTASMLKISTSDAAH--LVTSLFKTLADRAIVNAVTTDSGGTIY 961 Query: 492 YLPKEHMTFSLITDAWI--CPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKV 549 L + + I C V + L G Sbjct: 962 TLSPSRIVICPEERSEILECSVCQRRLAVDSHGR-------------------------- 995 Query: 550 TMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEH 609 E+ EG + +HD +L + N R V EH Sbjct: 996 ---ELLDGSPCISLGCEGTFGITE--NHDNYYRRL-----YHSRNSRTV------VAKEH 1039 Query: 610 SAQQSSERLQSYEKMFKN-------GQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPG 662 + S+ EK FK N+L + T+EMG+D + T+ S T+ Sbjct: 1040 TGLLDSDERVELEKEFKKPVDKQNADAPNILVATPTLEMGIDIGDLSTVMLASLPDTV-- 1097 Query: 663 PEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDV 722 V R + N +L + + + G + F Sbjct: 1098 ------ASYVQRVGRAGRLTGNSLVLAMVVGRQKALARLTNPTETIGGEVQP-PAAFLSA 1150 Query: 723 LFNDHEEAQS-LMNNTRITGVHYTDRYLQNPVALA---LLGSILRPLKTKL 769 H + L+++ T RY + + L+ +++ L+ + Sbjct: 1151 REILHRQFAGYLIDSIDFTQTEVKPRYANSVFGIGGKNLVSELVQRLEAGV 1201 >UniRef50_A3V5V1 Probable ATP-dependent helicase Lhr n=1 Tax=Loktanella vestfoldensis SKA53 RepID=A3V5V1_9RHOB Length = 1757 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 88/594 (14%), Positives = 168/594 (28%), Gaps = 75/594 (12%) Query: 155 EYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEI 214 E D DE G R +R ++ GTA +R + Sbjct: 533 EDYPDAWLDEKPNGEKRLKPTYRKKRAQQYSVRPDGTAHSGMRQ------AWFLPGKYRF 586 Query: 215 LSWHQRTQTSTAPNANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQ 274 + S+A D+ KLA+ + ++R A + + ++ + Sbjct: 587 CPSCRDVNISSAR----DMNKLASLSAESRSSATTILLSTVLRWMNSPDSTIQKHSRKLL 642 Query: 275 AATGGKAATILVSRTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLF 334 A T + L + + + V R I + Q + E L + L Sbjct: 643 AFTDNRQDAALQAGHFNDFVFVTMLRGAIINALRQAPGGVLEEANIGQEVQRSL-QFLAA 701 Query: 335 REFMRRPKRTNSLET--QGLVQVGYQGLEKIHKSPLHWQEKGLTLDDWR----DFLKVTL 388 EF R + T +G + + + + + L W ++ WR + ++ L Sbjct: 702 SEFSNR-ADEWLVNTGVKGERRNDAEAILRQNLQHLFWVDQRRG---WRYTNPNLEQLGL 757 Query: 389 DHYVRESNFTQLDDELKNWIGSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKL 448 R + + ++ S + N ++ + + +R G Sbjct: 758 -LVARYKYLDDIASDEGEFVASPI----LSNASPEERKRALKAVYDHMRKG--------- 803 Query: 449 LMLGAG-FKTVNAATIDIINT-WLKEAWAQLTGPL---AVLKPDGNRFYLPKEHMTFSLI 503 L + +G + + N +K W + + D + K L+ Sbjct: 804 LAVDSGALNRLKLEELSGKNHNLIKSPWNIEEDRIVTSTIFMTDPPKRKEMKNKDEDKLL 863 Query: 504 TDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQED 563 + + KI D F G + E + + V Sbjct: 864 RGSPTSTIGRKIRDMTFAGR--RIELKEVPEVMEGLLKASENYGSVVKEAGPFGGMGWRL 921 Query: 564 YAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGG---FYYRTAEHSAQQSSERLQS 620 + A D + + V+ I + + GG F + EH+AQ + + Sbjct: 922 AGSTVQFALDEAHENAELQNEYFVGVYLKIAEMLEAGGETLFGFEGREHTAQVEGDLREL 981 Query: 621 YEKMFKNGQ----------------------LNVLNCSTTMEMGVDTDRVMTLASRSQQA 658 E F+ G L L CS TME+GVD + + R+ Sbjct: 982 REMRFRYGSDDRKSLIEAEEKLKNFKEDSRFLPTLFCSPTMELGVDISAMNVVYLRNAPP 1041 Query: 659 TIP--------GPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQI 704 T ++ + F + V I + Sbjct: 1042 TAANYAQRSGRAGRSGQAALILTYCAAQSPHDQYFFERKTDLVDGVVVPPSIDL 1095 >UniRef50_C9YW00 Putative RNA helicase n=1 Tax=Streptomyces scabiei 87.22 RepID=C9YW00_STRSW Length = 2240 Score = 56.8 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 4/63 (6%) Query: 599 EGGFYYRTAEHSAQQSSERLQSYEKMFKNG----QLNVLNCSTTMEMGVDTDRVMTLASR 654 G + AEH+ + + + E+ FK G NVL+C+ T+EMG+D + + Sbjct: 1044 AGPYQVVVAEHTGMLTRAQREKVEEAFKRGGGFKDPNVLSCTPTLEMGIDIGDLSAVVLA 1103 Query: 655 SQQ 657 + Sbjct: 1104 ALP 1106 >UniRef50_C9ZFT8 Putative RNA helicase n=1 Tax=Streptomyces scabiei 87.22 RepID=C9ZFT8_STRSW Length = 2326 Score = 56.1 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 8/99 (8%) Query: 591 TDINDRVVEGGFYYR--TAEHSAQQSSERLQSYEKMFKNG----QLNVLNCSTTMEMGVD 644 D R+ G +R TAEH+ S + E+ F+ G NVL+C+ T+E+G+D Sbjct: 1050 GDYYRRLYLTGGTFRVVTAEHTGMLSRPERERVERAFRTGTHYTDPNVLSCTPTLELGID 1109 Query: 645 TDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVEL 683 + + S A + R G V Sbjct: 1110 IGDLSAVLLGSLPAGP--ANYVQRAGRAGRRTGNALVVA 1146 >UniRef50_B6ASD7 RNA helicase n=1 Tax=Leptospirillum sp. Group II '5-way CG' RepID=B6ASD7_9BACT Length = 1717 Score = 55.7 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 39/108 (36%), Gaps = 8/108 (7%) Query: 608 EHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIP------ 661 EH+AQ + + E+ F+ G L VL CS TME+GVD ++ + R+ T Sbjct: 937 EHTAQVNHGDREDREERFREGVLPVLFCSPTMELGVDIAQLNAVYLRNVPPTPANYAQRS 996 Query: 662 --GPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQ 707 ++ + F K V + + + Sbjct: 997 GRSGRSGQPSIVITYCSIQSPHDQYFFRNSEKMVAGVVTPPLLDLSNE 1044 >UniRef50_B5HBR0 Truncated helicase superfamily 1 and 2 ATP-binding protein n=1 Tax=Streptomyces pristinaespiralis ATCC 25486 RepID=B5HBR0_STRPR Length = 1904 Score = 55.7 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 7/99 (7%) Query: 599 EGGFY-YRTAEHSAQQSSERLQSYEKMFKNGQ----LNVLNCSTTMEMGVDTDRVMTLAS 653 E G Y AEH+ + + E+ F+ G+ NVL+C+ T+E+G+D ++ + Sbjct: 642 EAGPYSVVAAEHTGVLKRKEREEVERGFREGRRHTDPNVLSCTPTLELGIDIGQLEAVVL 701 Query: 654 RSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKA 692 S AT + RS G + P Sbjct: 702 ASLPATT--ANYVQRVGRAGRSTGNALMVSLADTSPRAL 738 >UniRef50_Q2GBH3 DEAD/DEAH box helicase-like protein n=1 Tax=Novosphingobium aromaticivorans DSM 12444 RepID=Q2GBH3_NOVAD Length = 1704 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 45/151 (29%), Gaps = 33/151 (21%) Query: 589 VWTDINDRVVEGGFY---YRTAEHSAQQSSERLQSYEKMF-------------------- 625 +++D+ R+ G + EH+AQ S + E F Sbjct: 928 LYSDVAVRLAAPGGLPLAFEAREHTAQVDSLLREMRECRFRFGNSDKQRMAEIANDAKVI 987 Query: 626 --KNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIP--------GPEWHLNDELVVRS 675 K L +L CS TME+GVD ++ + R+ T +V Sbjct: 988 AEKRDFLPLLYCSPTMELGVDISQLNVVYLRNAPPTPANYAQRAGRAGRSGQAALVVTYC 1047 Query: 676 LGYKTVELNEFILPAKATNAVERVKDIQIHK 706 + F + + I + Sbjct: 1048 AAQSPHDQYYFERRTDLVAGIVKAPAIDLVN 1078 >UniRef50_A3MWQ0 DEAD/DEAH box helicase domain protein n=5 Tax=Thermoproteaceae RepID=A3MWQ0_PYRCJ Length = 751 Score = 54.5 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 55/136 (40%), Gaps = 1/136 (0%) Query: 525 PYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQL 584 P T FE + + ++ + ++ R + +AE A V Sbjct: 226 PAEFTQALFESDRVNVVVGPLGRRGRLVQVLARPRFRSKWAEAARLAAICVEEGVKCLVF 285 Query: 585 RSENVWTDINDRVVEGGFY-YRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGV 643 + ++++ R ++ G Y R A H A +E + E FK G+++V+ + T+E+GV Sbjct: 286 TDSHRYSEVIYRALKMGGYGERVAVHRAGLDAEERRRVEDAFKRGEIDVVISTPTLELGV 345 Query: 644 DTDRVMTLASRSQQAT 659 D V S + Sbjct: 346 DIGDVDVAVLASIPPS 361 >UniRef50_C8VVH8 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VVH8_DESAS Length = 2136 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 7/60 (11%) Query: 606 TAEHSAQQSSERLQSYEKMFKNGQL-------NVLNCSTTMEMGVDTDRVMTLASRSQQA 658 EH+ E + E+ FK+G N+L+C+ T+EMG+D + +L S Sbjct: 1008 AKEHTGLLKREDREKVEQEFKSGITTRKPWFSNLLSCTPTLEMGIDIGDLSSLILCSVPP 1067 >UniRef50_A0L7C1 DEAD/DEAH box helicase domain protein n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L7C1_MAGSM Length = 2099 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 18/100 (18%) Query: 606 TAEHSAQQSSERLQSYEKMFKNGQL-------NVLNCSTTMEMGVDTDRVMTLASRSQQA 658 AEH+ + + E+ FK + N+L+C+ T+EMG+D + + S Sbjct: 979 AAEHTGLLKRDDREELERQFKAAEADRQPWHPNLLSCTPTLEMGIDIGDLSSAILCSVPP 1038 Query: 659 TIPGPEWHL---------NDELVVRSLGYKTVELNEFILP 689 + + L V + +L F P Sbjct: 1039 AQ--ANYLQRIGRAGRRDGNALNVTIANGRPHDLYFFADP 1076 >UniRef50_C1XVJ6 Helicase family protein with metal-binding cysteine cluster n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XVJ6_9DEIN Length = 1838 Score = 53.7 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 2/67 (2%) Query: 596 RVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQ--LNVLNCSTTMEMGVDTDRVMTLAS 653 RV HS Q E + E+ F++ + L+ L + T+EMG+D + ++ Sbjct: 987 RVRVFPVPLEARAHSGQVPGEERRKLEERFRDPKDPLSALVATPTLEMGIDIGALSSVFL 1046 Query: 654 RSQQATI 660 R+ + Sbjct: 1047 RNIPPSP 1053 >UniRef50_C0GNR7 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GNR7_9DELT Length = 1483 Score = 53.4 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 44/285 (15%), Positives = 89/285 (31%), Gaps = 52/285 (18%) Query: 390 HYVRESNFTQLDDELKNWIGSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLL 449 V+E ++ DE + W +F++ P + ++S K+L Sbjct: 671 FTVQE---LEILDEAELW-----FLRFIKKPPDTSQGKKDFLMLRTVS--SLSPVEQKIL 720 Query: 450 MLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWIC 509 + A + I W ++ + LA+ K R YL E Sbjct: 721 NVFLK---ERAIELFDIKAWKDSSYIKYNRHLAIRKR---RIYLDAEQA----------- 763 Query: 510 PVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLA 569 PV+ +I G++ L + H LA V + + A + Sbjct: 764 PVSERI-----TGIS--LSHYSRNHHAFLADLGRSVPADADSH--LSVSEAARAGANIVR 814 Query: 570 KARDWVSHDPLIAQLRSEN---------------VWTD-INDRVVEGGFYYRTAEHSAQQ 613 K + ++ + + W + R HS++ Sbjct: 815 KIISSLVEKGIVREFSDDGRNSYALNPEYVVFSPEWINSRRTRAGSDPRAIIVRYHSSEL 874 Query: 614 SSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQA 658 +++ E F+ G ++ L + T+EMG+D + ++ Sbjct: 875 ETQKRADVENQFRKGDVDFLLATPTLEMGIDIGSLQSILLVGVPP 919 >UniRef50_Q3IP60 Lhr-like helicase n=5 Tax=Halobacteriaceae RepID=Q3IP60_NATPD Length = 949 Score = 53.4 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 51/151 (33%), Gaps = 15/151 (9%) Query: 522 GLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLI 581 GL+ + V + R+ E E A + ++ + Sbjct: 196 GLSATVGDPTEVGRFLTGDRGCHVTDVEAGTNLDVTVRTPEIRPEDRTAAGELLTDAEVA 255 Query: 582 AQLRSENVWTDINDRVVEGGFYYRTAE---------------HSAQQSSERLQSYEKMFK 626 + +R + D +D V+ +TAE H S E FK Sbjct: 256 SHVRVIDELVDAHDSVLIFVNTRQTAEGLGSRLKAYGTNIGIHHGSLSKSARIDVEDAFK 315 Query: 627 NGQLNVLNCSTTMEMGVDTDRVMTLASRSQQ 657 G+++ L C+++ME+G+D + + + Sbjct: 316 TGEIDGLMCTSSMELGIDVGDIDHVIQYASP 346 >UniRef50_C9NK45 DEAD/DEAH box helicase domain protein n=1 Tax=Streptomyces flavogriseus ATCC 33331 RepID=C9NK45_9ACTO Length = 1862 Score = 53.4 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 47/143 (32%), Gaps = 22/143 (15%) Query: 528 PTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSE 587 P H++ H + + + + + ++ + + D R + Sbjct: 1049 PEHVALRHGSAVSWTCSTCNRRHLHPGVGICTKCRRPLPAESEQFESIDADYYAWMARKQ 1108 Query: 588 NVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMF-------KNGQL----NVLNCS 636 G F TAE + Q Q+ + F K ++ +VL+ + Sbjct: 1109 -----------FGHFRLNTAELTGQTDRLDAQARQARFQGIFLDGKEHEIPDTLDVLSVT 1157 Query: 637 TTMEMGVDTDRVMTLASRSQQAT 659 TTME GVD + + + T Sbjct: 1158 TTMEAGVDIGPLSAVLMANMPPT 1180 >UniRef50_A4XIS4 Transcription-repair coupling factor n=2 Tax=Clostridia RepID=A4XIS4_CALS8 Length = 1143 Score = 53.0 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 41/216 (18%), Positives = 74/216 (34%), Gaps = 9/216 (4%) Query: 596 RVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRS 655 + + G H Q +L+ F NG+ +VL C+T +E GVD V TL Sbjct: 835 QALLGEDIKIAYAH-GQMDERQLEEVLIDFINGKYDVLVCTTIIESGVDMPNVNTLIVED 893 Query: 656 QQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQF 715 + L + RS + A +R+ I+ +L S F Sbjct: 894 ADRLGLAQLYQLRGRVG-RSNKLAYAYFTFRKDKVLSEEAAKRLSAIKEFTELG---SGF 949 Query: 716 GQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQ--NPVALALLG-SILRPLKTKLTDG 772 D+ + + I V Y D Y++ + L G I ++ ++ Sbjct: 950 KIAMRDLEIRGAGSIVGKLQHGHINAVGY-DMYIRLLSEEIRRLKGEEIQPEIEPQIDIR 1008 Query: 773 AEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQW 808 + + + D D+ + SI +D + + Sbjct: 1009 VNAYISSEYIDDDKERINMYKKISSIDTKEDVQEIY 1044 >UniRef50_C5T093 Putative uncharacterized protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T093_ACIDE Length = 96 Score = 52.2 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 6/81 (7%) Query: 715 FGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKTKLTD--- 771 FG RFW + L+ + I + Y DRY+ P++ AL + LK + Sbjct: 3 FGTRFWAAVNPQDL-LNGLLIDRSIVSISYEDRYMVTPLSCALWVETISVLKARFEPLDR 61 Query: 772 --GAEVTLDTLFKDKDRPGNR 790 E+ + +++ + R Sbjct: 62 WANPEIMVSSIYIEDSRSVRH 82 >UniRef50_Q4C992 Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal n=1 Tax=Crocosphaera watsonii WH 8501 RepID=Q4C992_CROWT Length = 1257 Score = 51.8 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 4/57 (7%) Query: 606 TAEHSAQQSSERLQSYEKMFKNGQ----LNVLNCSTTMEMGVDTDRVMTLASRSQQA 658 EH++ E + E F GQ N+L+ ++T+EMG+D + ++ S Sbjct: 982 AREHTSLLDREVREELETQFITGQRRSDPNLLSATSTLEMGIDIGDLSSVLLCSVPP 1038 >UniRef50_B1ZZM6 DEAD/H associated domain protein n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZZM6_OPITP Length = 900 Score = 51.4 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 21/49 (42%) Query: 609 HSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQ 657 H A E K G+L + CST++EMG+D + + S Sbjct: 337 HHASLDRGVRLEIEDRLKRGELRAVVCSTSLEMGIDIGSIDVVVMVSAP 385 >UniRef50_UPI000050FC02 helicase superfamily protein n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050FC02 Length = 2230 Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 5/61 (8%) Query: 605 RTAEHSAQQSSERLQSYEKMFKNG-----QLNVLNCSTTMEMGVDTDRVMTLASRSQQAT 659 EHS+ ++ +++E FK G NVL + T+EMG+D + T+ S T Sbjct: 1065 VAREHSSMLDTDERKAFEDGFKRGSDDPSAPNVLVATPTLEMGIDIGDLSTVMLGSLPET 1124 Query: 660 I 660 + Sbjct: 1125 V 1125 >UniRef50_Q6KZS3 ATP-dependent RNA helicase n=4 Tax=Thermoplasmatales RepID=Q6KZS3_PICTO Length = 901 Score = 51.0 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 32/69 (46%) Query: 592 DINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTL 651 D++ R+ R H S E ++ E FK+G+L L C++++E+G+D + Sbjct: 274 DMSFRIKLMDKNARIEVHHGSLSRESRENAENDFKSGKLKALICTSSLELGIDIGTAELV 333 Query: 652 ASRSQQATI 660 + I Sbjct: 334 VQFNSPRQI 342 >UniRef50_D2NP15 Transcription-repair coupling factor n=2 Tax=Rothia mucilaginosa RepID=D2NP15_9MICC Length = 1330 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 48/298 (16%), Positives = 87/298 (29%), Gaps = 12/298 (4%) Query: 516 LDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWV 575 +D TP +P + + + T + + D A R+ + Sbjct: 922 VDVLAMSATP-IPRTLEMSLTGIRETSTLATAPEERHPVLTFVGPRTDSQITAAIRREIM 980 Query: 576 SHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNC 635 + D+ + + R A + S RL+ F + +VL C Sbjct: 981 REGQVFFVHNRVADIDDVAAEIGKLVPEARIATAHGRMSESRLEQIIVDFWERRFDVLVC 1040 Query: 636 STTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNA 695 +T +E G+D TL Q H V R + A Sbjct: 1041 TTIVETGLDISNANTLIVDHAQNYGLSQL-HQLRGRVGRGRERAYAYFLYPVDKTLGEIA 1099 Query: 696 VERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVAL 755 ER+K + H +L L D+ + I GV + D YL Sbjct: 1100 HERLKAVATHNELGAGLQL---AMKDLEIRGAGNLLGGEQSGHIAGVGF-DLYL------ 1149 Query: 756 ALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAAL 813 L+G + + + + T L + P + + + ++ A + Sbjct: 1150 RLVGEAVANYRGEKEEREVETKIDLPVNAHIPHTYIDSERLRLQAYRQIAAADTEEKI 1207 >UniRef50_Q0W7D8 ATP-dependent RNA helicase n=3 Tax=Euryarchaeota RepID=Q0W7D8_UNCMA Length = 937 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 25/46 (54%) Query: 607 AEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLA 652 A H S E E FK+G++N L C+++ME+G+D + + Sbjct: 288 AVHHGSLSKEARIEAEDSFKDGKVNALVCTSSMELGIDIGDIDHVI 333 >UniRef50_A6BZ20 Putative RNA helicase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6BZ20_9PLAN Length = 2120 Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 54/158 (34%), Gaps = 22/158 (13%) Query: 535 HLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKAR-DWVSHDPLIAQLRSENVWTDI 593 +L ++ V + E WK S E Y++ A D+ + Sbjct: 928 NLICSESGKAVIRPAAEAEYWKDAPSWEYYSQKGRYAEGDYSPRQEYYQDRYRKGALR-- 985 Query: 594 NDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKN----GQLNVLNCSTTMEMGVDTDRVM 649 RVV +EH+ ++E + E F NVL C++T+EMG+D + Sbjct: 986 --RVV-------ASEHTGLLATEDREKLELDFSRTKHTDDPNVLTCTSTLEMGIDIGDLS 1036 Query: 650 TLASRSQQATIP------GPEWHLNDELVVRSLGYKTV 681 + S + G ++ S+ + Sbjct: 1037 STMLCSIPPSTASYLQRIGRAGRSTGTALIVSVVNQRP 1074 >UniRef50_Q5P8U3 Helicase (Putative RNA helicase),fragment n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5P8U3_AZOSE Length = 1246 Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 7/79 (8%) Query: 587 ENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQL-----NVLNCSTTMEM 641 + D R Y +AEH+ ++ ++ E FK N+L+ + T+EM Sbjct: 974 DGWLADRFSRGDLRRVY--SAEHTGLLQRDQREALEARFKAKDPAPWYENLLSATPTLEM 1031 Query: 642 GVDTDRVMTLASRSQQATI 660 GVD + ++ S Sbjct: 1032 GVDIGDLSSVMLCSVPPNQ 1050 >UniRef50_C1XMC2 Helicase family protein with metal-binding cysteine cluster n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XMC2_MEIRU Length = 906 Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 40/246 (16%), Positives = 73/246 (29%), Gaps = 25/246 (10%) Query: 18 VAFCNDCNEPH-----LLARDKKGKLVQWENKGGDE------FSLQDEVPVEHDATEEKV 66 +AFC +C + + + + + E F + P + + E+V Sbjct: 457 LAFCRECGQEFYTVWRITGSEGSYYEARRLSDRYSESGAEPGFLYPGDWPTDEEEITERV 516 Query: 67 EKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRI--GVINNDSIPLI--INDIEQVCSAS 122 E+ +P + + RL R + G + + L+ + + C Sbjct: 517 -PEDWLEPLEREIKRDKRKKLPRPVRLTPDGRELASGQPPGEDVQLLHYLEAPFEFCPCC 575 Query: 123 GCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLI 182 G Y + A LG TVL + LP ++L+ Sbjct: 576 GVAYGARQASDFGKLATLGSE--GRATATTVLSLSTVLHLRK-------TELPREAQKLL 626 Query: 183 TFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARAKQ 242 +FTD RQ + A + LRG++ + E L + Sbjct: 627 SFTDHRQDASLQAGHFNDFVQTGLLRGALYRAVEAAGPQGLRHDHLTQKVFEALGLELAE 686 Query: 243 AREQAE 248 E Sbjct: 687 YASNPE 692 >UniRef50_A5UZG2 Transcription-repair coupling factor n=2 Tax=Roseiflexus RepID=A5UZG2_ROSS1 Length = 1265 Score = 49.9 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 66/200 (33%), Gaps = 15/200 (7%) Query: 593 INDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLA 652 + DR+ R A Q +L+ F G+ +VL C+T +E G+D T+ Sbjct: 892 VADRLRRLVPEARIAVGHGQLEEHQLERVMLDFFTGRDDVLVCTTIIESGLDVPNANTII 951 Query: 653 SRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPL 712 + L + + + P+ A ER++ IQ +L Sbjct: 952 IDDATNFGLAQLYQLRGRVGRSTQRAYAYLFYKSERPSTPE-AQERLRAIQEATELG--- 1007 Query: 713 SQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKTKLTDG 772 + F D+ + I V + D Y LL +R LK +L Sbjct: 1008 AGFRIAMRDLEIRGAGNLLGAEQSGHIAAVGF-DLY------SRLLEQAVRTLKQRLIAT 1060 Query: 773 AEVT----LDTLFKDKDRPG 788 +T + T +P Sbjct: 1061 NFITGTDAMRTSPGAPAQPS 1080 >UniRef50_Q8TGY8 Lhr-like Superfamily II helicase n=1 Tax=Methanopyrus kandleri RepID=Q8TGY8_METKA Length = 910 Score = 49.9 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 1/104 (0%) Query: 558 DRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDI-NDRVVEGGFYYRTAEHSAQQSSE 616 + E L + + + ++ R+ H + S E Sbjct: 223 PTGPHEVKERLELIHELAKERDSVLVFTNTRQMAELLATRLKTEYDDIEVEIHHSSISRE 282 Query: 617 RLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATI 660 + EK FK G+++VL C++++E+G+D V + + Sbjct: 283 KRMEVEKRFKKGEIDVLVCTSSLELGIDIGHVDLVVQYGSPRQV 326 >UniRef50_Q12A09 Transcription-repair coupling factor n=2 Tax=Burkholderiales RepID=Q12A09_POLSJ Length = 1201 Score = 49.5 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 64/196 (32%), Gaps = 23/196 (11%) Query: 592 DINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTL 651 + +++ E R A Q L+ K F + N+L CST +E G+D T+ Sbjct: 873 NRREKLEEILPEARIAVAHGQMPERELERVMKDFVAQRYNLLLCSTIIETGIDVPSANTI 932 Query: 652 ASRSQQATIPGPEWHLNDELVVRSLGYKTVELN-----EFILPAKATNAVERVKDIQIHK 706 ++ L +R ++ + A +R++ IQ + Sbjct: 933 VMSRAD------KFGLAQLHQLRGRVGRSHHQAYAYLMVPDIEGLTKQASQRLEAIQQME 986 Query: 707 QLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLK 766 +L S F D+ E + + V + + +L + LK Sbjct: 987 ELG---SGFYLAMHDLEIRGTGEVLGESQSGNMLEVGFQ-------LYNEMLSEAVASLK 1036 Query: 767 TKLTDG--AEVTLDTL 780 + +++ T Sbjct: 1037 AGREPDLLSPLSVTTE 1052 >UniRef50_Q57742 Uncharacterized ATP-dependent helicase MJ0294 n=6 Tax=Archaea RepID=HELX_METJA Length = 841 Score = 49.5 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 50/120 (41%), Gaps = 7/120 (5%) Query: 547 QKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRT 606 +++ + I +D +E ++K R + LI + ++ ++T+ FY + Sbjct: 242 KEIEIKVISPVDDFIYTPSEEISK-RLYNLLKKLIEEHKTTLIFTNTRSATERVAFYLKQ 300 Query: 607 ------AEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATI 660 H + S E E+ K G++ V ST++E+GVD + + ++ Sbjct: 301 LGVEKVETHHSSLSREHRLEVEEKLKKGEIRVCISSTSLELGVDIGSIDLVILLGSPKSV 360 >UniRef50_D0TGP7 DEAD/DEAH box helicase domain-containing protein n=1 Tax=Bacteroides sp. 2_1_33B RepID=D0TGP7_9BACE Length = 2046 Score = 49.1 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 8/100 (8%) Query: 586 SENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNG----QLNVLNCSTTMEM 641 N + + +R + Y EH+ + + E FK NVL ++T+EM Sbjct: 978 ELNYYLQVYNRNISPRVY--ANEHTGLLERNKREKLEIDFKKHPTPSSTNVLVATSTLEM 1035 Query: 642 GVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTV 681 G+D + + + + + R G V Sbjct: 1036 GIDIGDLNVMGNANVPPKP--SNFLQRVGRAGRKEGSALV 1073 >UniRef50_C8NS10 Helicase n=4 Tax=Corynebacterium RepID=C8NS10_COREF Length = 2100 Score = 49.1 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 35/208 (16%), Positives = 65/208 (31%), Gaps = 12/208 (5%) Query: 605 RTAEHSAQQSSERLQSYEKMFKNGQ-----LNVLNCSTTMEMGVDTDRVMTLASRSQQAT 659 EH++ + E F++G NVL + T+EMG+D + T+ S + Sbjct: 1036 VAREHTSLLDTPTRVQRENAFRSGDESADSPNVLVATPTLEMGIDIGDLSTVMLASLPTS 1095 Query: 660 IPG--PEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQ 717 + L SL V+ LP + + + Sbjct: 1096 VASYVQRVGRAGRLTGNSLILALVKGRGATLPKLNKPLSVISGAVSPPVAFLAAVEILNR 1155 Query: 718 RFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKTKLTDGAEVTL 777 +F L + + A + + + V + D P AL+ I R ++ + D + Sbjct: 1156 QFTAYLVDSIDLAMEIPDLSDAVSV-FND----VPGEPALVDVITRRVRAGIDDLLTEFI 1210 Query: 778 DTLFKDKDRPGNRPFHDWMSIADFQDFA 805 TL W + + Sbjct: 1211 TTLTGQITEDSAAELRRWATTEEAGGLI 1238 >UniRef50_B4D6Q0 DEAD/H associated domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6Q0_9BACT Length = 844 Score = 49.1 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 23/49 (46%) Query: 609 HSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQ 657 H A + + E K G+L + CST++E+G+D V + S Sbjct: 294 HHASLERDVRRDVEDRLKRGELRAVVCSTSLELGIDIGSVDLVVMMSTP 342 >UniRef50_B5WD80 DEAD/DEAH box helicase domain protein n=1 Tax=Burkholderia sp. H160 RepID=B5WD80_9BURK Length = 2139 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 5/59 (8%) Query: 605 RTAEHSAQQSSERLQSYEKMFKNGQL-----NVLNCSTTMEMGVDTDRVMTLASRSQQA 658 AEH+ + E FK+ N+L+ + T+EMGVD + ++ S Sbjct: 986 IAAEHTGLLERTEREDLEGRFKSRHPKPWYENLLSATPTLEMGVDIGDLSSVMLCSVPP 1044 >UniRef50_A1U089 DEAD/DEAH box helicase domain protein n=1 Tax=Marinobacter aquaeolei VT8 RepID=A1U089_MARAV Length = 2213 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 15/104 (14%) Query: 570 KARDWVSHDPLIAQLRSENVW--TDINDRVVEGGFYYR--------TAEHSAQQSSERLQ 619 +AR W + +A L E + ++ DR YR EH+ ++ + Sbjct: 1031 EARLW-TGAASLAYLDDEGYYEPGELTDREGYYRTRYRKGALRRVFAHEHTGLLATAERE 1089 Query: 620 SYEKMFKNG----QLNVLNCSTTMEMGVDTDRVMTLASRSQQAT 659 + E F G NVL ++T+EMG+D + T S T Sbjct: 1090 ALEYSFNKGSHADDPNVLTATSTLEMGIDIGDLSTTMLCSIPPT 1133 >UniRef50_A8M876 Helicase superfamily 1 and 2 ATP-binding n=2 Tax=Actinomycetales RepID=A8M876_SALAI Length = 2125 Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 7/84 (8%) Query: 584 LRSENVWTDINDRVVEGGFYYR--TAEHSAQQSSERLQSYEKMFKNGQL-----NVLNCS 636 L E + + R+ R EH++ SYE FKN NVL + Sbjct: 1006 LAREALADNFYRRLYASPDMRRIVAREHTSLLDDATRLSYEDGFKNSSTEPNAPNVLVAT 1065 Query: 637 TTMEMGVDTDRVMTLASRSQQATI 660 T+EMG+D + T+ S T+ Sbjct: 1066 PTLEMGIDIGDLSTVLLSSLPRTV 1089 >UniRef50_B5JHN5 Helicase conserved C-terminal domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JHN5_9BACT Length = 1008 Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 35/116 (30%), Gaps = 27/116 (23%) Query: 604 YRTAEHSAQQSSERLQSYEKMFK-------------------NGQLNVLNCSTTMEMGVD 644 R +H+ Q +E E+ F+ + ++ L CS TME+GVD Sbjct: 235 LRGEDHTGQLKNELRIDREERFRADFYKEENGKRVLDKDRIWSDSISALFCSPTMELGVD 294 Query: 645 TDRVMTLASRSQQATIP--------GPEWHLNDELVVRSLGYKTVELNEFILPAKA 692 + + R+ ++ Y + N F + Sbjct: 295 ISALSVVHMRNAPPNAANYAQRSGRAGRSGQAALVMTYCSSYSPHDRNFFDNKEQL 350 >UniRef50_A7HNV8 DEAD/DEAH box helicase domain protein n=3 Tax=Thermotogaceae RepID=A7HNV8_FERNB Length = 923 Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 59/345 (17%), Positives = 116/345 (33%), Gaps = 21/345 (6%) Query: 524 TPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQ 583 TP +P + L ++ E+ +D +A R+ +I Sbjct: 558 TP-IPRTLHMALSELKEFSEIKTPPFGRKEVQVHIGPFDDRIVRIAILREINRGGQVIYV 616 Query: 584 LRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGV 643 N D+ +R+ E QQS L+ MF +G+ +VL C+T +E GV Sbjct: 617 HNRVNTIYDVYERLKELLPEVSIVIGHGQQSKSELKRAIDMFFHGKADVLLCTTIVENGV 676 Query: 644 DTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQ 703 D TL + L +R ++ +++ + ++ + Sbjct: 677 DVPNANTLIVDDAH------RYGLAQLYQLRGRVGRSDKISFAYFFHPKHVNDKVLERLY 730 Query: 704 IHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGV--HYTDRYLQNPVALALLGSI 761 K GP S D+ L + I + +Y YL+ LL Sbjct: 731 AIKSYVGPGSGLKIAMRDMEIRGIGAVFGLEQHGYINDIGLNY---YLE------LLDET 781 Query: 762 LRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVELTV 821 ++ K +L + L+ + P + + + ++ A L ++L + Sbjct: 782 IKESKGELISKVDTELEGIPGSIIIPEAYIYDPFERMRFYRRIASATSIDEL-MDIKLEL 840 Query: 822 FDSPRDIPHHRKLTVTFEDGQVLKIRFDQGMGYWRINFSSQWHYF 866 D IP+ + + + G + + + G+ I S+ F Sbjct: 841 EDRFGKIPNSVENLLKY--GMLRVLLWKMGVKKATIGDSTIVVEF 883 >UniRef50_C4ZBV9 Transcription-repair coupling factor n=6 Tax=Clostridiales RepID=C4ZBV9_EUBR3 Length = 1177 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 47/274 (17%), Positives = 89/274 (32%), Gaps = 29/274 (10%) Query: 592 DINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTL 651 DI ++ E A Q L+ F NG+++VL +T +E G+D V T+ Sbjct: 850 DITAKLQELVPDATVAFAHGQMKETELERIMYRFINGEIDVLVSTTIIETGLDISNVNTM 909 Query: 652 ASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGP 711 + L + RS L A +R+ I+ + L Sbjct: 910 IIHDADNMGLSQLYQLRGRVG-RSNRTAYAFLMYRRNKMLKEVAEKRLAAIKEYSDLG-- 966 Query: 712 LSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLK--TKL 769 S F D+ + + V Y D Y + +L ++ K + Sbjct: 967 -SGFKIAMRDLEIRGAGNLLGAEQSGHMEAVGY-DLYCK------MLSEAVKEAKGIEDI 1018 Query: 770 TDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFAD-----------QWFAAALGRPV- 817 +D + T+D + D P +++ + ++ A + G P Sbjct: 1019 SDKFDTTVDIVT-DAYIPAGYIANEFQKLDIYKRIAGIETEEEKDEMLEELIDRFGEPPK 1077 Query: 818 ---ELTVFDSPRDIPHHRKLTVTFEDGQVLKIRF 848 L + + H +T + G ++K+ Sbjct: 1078 SVLSLLRVARLKALAHAVYITEIKQTGSLIKLTM 1111 >UniRef50_Q46BX9 ATP-dependent RNA helicase n=4 Tax=Methanosarcinaceae RepID=Q46BX9_METBF Length = 955 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 60/198 (30%), Gaps = 29/198 (14%) Query: 533 FEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTD 592 E L + + + + ED L S + L A R Sbjct: 239 REKEVLKIAKAVGCEPEFASHLLCIRKIVEDSQSTLIFVNTRQSAEALAAGFRKLGTSIG 298 Query: 593 INDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLA 652 + H S E E+ FK+G L L C+++ME+G+D V + Sbjct: 299 V---------------HHGSLSFEARVEAEEAFKSGALKGLICTSSMELGIDIGNVDRVV 343 Query: 653 SRSQQATI---------PGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKD-I 702 + G + H + S+ + I A VE V I Sbjct: 344 QYGSPRQVSRLLQRVGRAGHKLHSVSRGTIVSMEVDDTAESMAITKAALEGRVEEVSPHI 403 Query: 703 Q----IHKQLNGPLSQFG 716 + + Q+ G + FG Sbjct: 404 KSLDVVANQIAGMVMDFG 421 >UniRef50_C1ADN7 Putative uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ADN7_GEMAT Length = 2009 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 52/308 (16%), Positives = 89/308 (28%), Gaps = 56/308 (18%) Query: 12 GSPVYEVAFCNDCNEPHLLAR----DKKGKLVQWENK----------------GGDEFSL 51 GS + E+ +C C E L R + +L+ E DE+++ Sbjct: 672 GSRLVELVYCESCGELFLGGRRGGRETAIELLPAEPNVDNLPESAGQDFFETLSADEYAV 731 Query: 52 QDEV-------PVEHDATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVIN 104 V P D K P G R+ G Sbjct: 732 FWPVESWPGVLPSPRDDVHVGEWKRAYLDPISATIQFPRIGNGVPEGRITGYVWERGDSQ 791 Query: 105 NDSIPLII---NDIEQVCSASGCGYRGMSGK---QPFRRALLGGPFYVTNIVPTVLEYCQ 158 + + C A G Y + P R G + + + + Sbjct: 792 DRHKRRKESPGTAVPYECPACGSDYYWRNAPLRLSPIRNFRAGFAKTTQLLATELFDLLR 851 Query: 159 DFTSDEGKEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWH 218 + +L+ F+DSRQ A+ A+ +++ R VVE L Sbjct: 852 LRQREP---------------KLVAFSDSRQDAAKAALDIERRHHEDLRREVVVESLR-- 894 Query: 219 QRTQTSTAPNANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATG 278 A D L A ++ ++A+ + G A + + ++LE A Sbjct: 895 ------AVAGARPDGTALQAEKERLTKEAQAHAVAGNLAAAFALKPRLDELETALANGAD 948 Query: 279 GKAATILV 286 G + V Sbjct: 949 GADLPVAV 956 >UniRef50_A8TCZ4 DEAD/DEAH box helicase domain protein n=1 Tax=Methanococcus voltae A3 RepID=A8TCZ4_METVO Length = 1301 Score = 47.2 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 48/343 (13%), Positives = 119/343 (34%), Gaps = 54/343 (15%) Query: 7 QNCDCGS-PVYEVAFCNDCNEPHLLARD-KKGKLVQWE--NKGGDEFSLQDEVPVEHDAT 62 CDCGS V+E+ C +C E ++ +KG + K +++S+ + Sbjct: 351 DKCDCGSNLVFEIYTCRNCGEEYINYEYIEKGAMTYKSLRRKPLEKYSVYKNYEDKKLKI 410 Query: 63 EEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINN---------DSIPLIIN 113 E + + ++ + + ++L + T + G N + + + Sbjct: 411 REIILSKENY-NNETALPVKLCKQCHSLHHESQSTCKCGNSKNFYDLYINITNKNKELSS 469 Query: 114 DIEQVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDS 173 ++ C C Y G + + + + F ++ + D Sbjct: 470 KNDKYCP--KCDYNGYAYRIIKGASEISDEFCAQSLFDELFITLPDHPK----------- 516 Query: 174 LPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADL 233 R+++ FTD+ Q +R A +++ E + + + + + Sbjct: 517 -----RKVLIFTDNVQRASRFARNIEEYH---------FEKIIRKKLLENISKVEKPIKI 562 Query: 234 EKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEM 293 +KL ++ + + Q + + + G T L ++ E+ Sbjct: 563 KKLMEETLDELDEFRDISEYKNRLQQCIYEELFAK----------GSNVTSLANKNIFEI 612 Query: 294 VNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFRE 336 + + ++I +YN ++K +F +N + ++L+ E Sbjct: 613 SMDTPKISNIEVK-EKYNKFIK--IFFKNRQISEYYDLLMDTE 652 >UniRef50_A4SC91 DEAD/DEAH box helicase domain protein n=1 Tax=Chlorobium phaeovibrioides DSM 265 RepID=A4SC91_PROVI Length = 1887 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 10/69 (14%) Query: 600 GGFYYRTAEHSAQQS----SERLQSYEKMFKNGQ------LNVLNCSTTMEMGVDTDRVM 649 G F E + Q S R + ++ +F +G+ +++L+ +TTME GVD ++ Sbjct: 1142 GAFRLHCEELTGQTDMSDKSSRQRWFQGIFLDGEAKEPQGIDILSVTTTMEAGVDIGSLV 1201 Query: 650 TLASRSQQA 658 + + Sbjct: 1202 AVEMANMPP 1210 >UniRef50_Q1NPX2 Transcription-repair coupling factor n=3 Tax=delta proteobacterium MLMS-1 RepID=Q1NPX2_9DELT Length = 1162 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 66/187 (35%), Gaps = 11/187 (5%) Query: 592 DINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTL 651 ++ R + + A Q + +L+ F ++NVL C+T +E G+D T+ Sbjct: 826 EVATRAQQLVPTAQVAVAHGQMPARQLEEIMVRFVRREINVLVCTTIIESGLDIPDANTI 885 Query: 652 ASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGP 711 + L + RS L L A A R++ + + +L G Sbjct: 886 IITRADRLGLAEIYQLRGRVG-RSRQQAYAYLLVPALDDLAGEARHRLQALMDYNELGG- 943 Query: 712 LSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKTKLTD 771 F D+ + I V Y D YL LL + LK +L + Sbjct: 944 --GFKLALSDLQIRGGGNILGESQSGNIAAVGY-DMYLD------LLQKTVLDLKRRLRE 994 Query: 772 GAEVTLD 778 G E + D Sbjct: 995 GEETSSD 1001 >UniRef50_D1VSM6 Transcription-repair coupling factor n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSM6_9FIRM Length = 1157 Score = 46.8 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 38/219 (17%), Positives = 69/219 (31%), Gaps = 12/219 (5%) Query: 611 AQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDE 670 Q + + L+ F G ++VL CST +E G+D T+ + L Sbjct: 860 GQMNEKDLEDTMLSFLRGDVDVLLCSTIIETGMDVQNANTMIITDSNRLGLSQLYQLRGR 919 Query: 671 LVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEA 730 + S E + A +R+K I+ + S F D+ Sbjct: 920 IGRSSRVAYAYFTYEKDVSIS-EIAQKRLKTIKEFTEFG---SGFKIALRDLEIRGSGSI 975 Query: 731 QSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNR 790 + I + Y D Y + L + LK T T+ L D P Sbjct: 976 LGSKQHGHIDNIGY-DLY------MKYLTQAVNKLKGIETRETIETVIDLKIDSYIPKTY 1028 Query: 791 PFHDWMSIADFQDFADQWFAAALGRPVELTVFDSPRDIP 829 + + + ++ + ++ + D D+P Sbjct: 1029 IEDERLRLEIYKKISVLESEKEYSDLID-ELIDRFSDLP 1066 >UniRef50_Q018A3 ATP-dependent RNA helicase (ISS) n=2 Tax=Ostreococcus tauri RepID=Q018A3_OSTTA Length = 934 Score = 46.8 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 2/57 (3%) Query: 613 QSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLND 669 Q +ER + E + G +N L C++ +EMG+D + T W Sbjct: 466 QQAER-RELESRLQRGAINALVCTSALEMGIDVGSLDATVHVGVPETA-SAMWQQAG 520 >UniRef50_C5JYR0 Tyrosyl-DNA phosphodiesterase domain-containing protein n=4 Tax=Ajellomyces RepID=C5JYR0_AJEDS Length = 696 Score = 46.8 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 45/267 (16%), Positives = 96/267 (35%), Gaps = 37/267 (13%) Query: 125 GYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLITF 184 + F+ + G + + L +D + G +G P +L RG + Sbjct: 63 QRLARASAGSFKEVVEGSDMELEEAIKLSL-QRRDSSGSTGAKGEAPSALAERGGEKTSP 121 Query: 185 TDSRQGTARMAV--------RMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKL 236 D+ G+ + + R + E ER +R +ST+ + L Sbjct: 122 DDAAPGSTKSSSLVGILGMDRKKMEEERL--------ARLGKKRKASSTSELPASKLAAT 173 Query: 237 AARAKQAREQAEEYRSWGMPDQAKLSQAQAEQ----LEQAYQAATGGKAATI-LVSRTW- 290 ++ + A AE +P A+ S+ + L Q A+ +V +TW Sbjct: 174 RSKNEDAAVGAE-MPGHHLPGNAERSRNKETTKSGVLSQPLPLASTSLQFPNGVVKKTWA 232 Query: 291 -------TEM-VNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFR---EFMR 339 ++ E+ +++D+ VL + +F++ +K + LL E + Sbjct: 233 FGYDRTGDDIKFEEVVQKSDLELAVLSSYMWNVDWMFSKFD--IKQTRFLLIMGEKEEDK 290 Query: 340 RPKRTNSLETQGLVQVGYQGLEKIHKS 366 + + N ++ G V++ + +E Sbjct: 291 KRELENDTKSMGSVRLCFPPMEPQVNC 317 >UniRef50_D2RFY4 DEAD/DEAH box helicase domain protein n=1 Tax=Archaeoglobus profundus DSM 5631 RepID=D2RFY4_ARCPR Length = 859 Score = 46.4 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 7/123 (5%) Query: 609 HSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHL- 667 H + S + EKMF G+L+ L C+++ME+G+D V + + + Sbjct: 251 HHSSLSRDVRIEAEKMFAEGKLDALVCTSSMELGIDIGHVDAVVQYNSPREV--KRLIQR 308 Query: 668 --NDELVVRSLGYKTVELNEFILPAKATNAVERVKD--IQIHKQLNGPLSQFGQRFWDVL 723 + + + NEF ++ V+R K I+ + + PL + +L Sbjct: 309 VGRSGHRLEEVSKGYIVANEFDEILESWAIVKRAKKGLIERIEPFSKPLDVLANQIVAML 368 Query: 724 FND 726 Sbjct: 369 MEG 371 >UniRef50_O29116 Large helicase-related protein (Lhr-1) n=2 Tax=Archaeoglobaceae RepID=O29116_ARCFU Length = 892 Score = 46.4 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 21/139 (15%), Positives = 52/139 (37%), Gaps = 8/139 (5%) Query: 525 PYLPTHISFEHLTLAQYDTFVAQKVTM--PEIWKLDRSQEDYAEGLAKARDWVSHDPLIA 582 P L + + ++ ++ + PE+ + ++ +A +++ + Sbjct: 187 PKLVSRFVGADAEVLEWKAEKEYEIEVVKPEVDEKLAAKLGVDAEIAGELKFIA--DAVK 244 Query: 583 QLRSENVWTDINDRVVEGGFYYR----TAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTT 638 + S ++ + G + H S E E+ F G+L+ L C+++ Sbjct: 245 EHGSALIFVNTRQTAEALGIKLKKLIDVEVHHGSLSRETRVEAEERFAKGELDALICTSS 304 Query: 639 MEMGVDTDRVMTLASRSQQ 657 ME+G+D V + + Sbjct: 305 MELGIDIGHVNLVVQYNSP 323 >UniRef50_C5A764 ATP-dependent helicase, lhr-like protein (Lhr) n=8 Tax=Thermococcaceae RepID=C5A764_THEGJ Length = 926 Score = 46.0 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 22/44 (50%) Query: 609 HSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLA 652 H S E EK K G++ L C+++ME+G+D V + Sbjct: 275 HHGSLSKEARVRAEKALKEGKIKALICTSSMELGIDIGDVDVVI 318 >UniRef50_A3DIQ2 Transcription-repair coupling factor n=7 Tax=Clostridia RepID=A3DIQ2_CLOTH Length = 1178 Score = 46.0 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 64/186 (34%), Gaps = 13/186 (6%) Query: 596 RVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRS 655 + + R A Q + L++ F NG+ ++L C+T +E G+D V T+ Sbjct: 859 EIQKLVPEARVAIAHGQMNETELENIMFRFINGEYDILVCTTIIESGLDMPNVNTIIVED 918 Query: 656 QQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQF 715 + L + RS + + A +R++ I+ + S F Sbjct: 919 ADKMGLAQLYQLRGRVG-RSNRLAYAYITYKKDKVLSEIAEKRLQAIKEFTEFG---SGF 974 Query: 716 GQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLK--TKLTDGA 773 D+ + I V Y D Y + LL + L+ + Sbjct: 975 KIAMRDLQLRGAGNLLGPQQHGHIDSVGY-DMYCK------LLAEAVNELRGIPVTKEDE 1027 Query: 774 EVTLDT 779 E+++D Sbjct: 1028 EISIDV 1033 >UniRef50_D1Y8J9 Transcription-repair-coupling factor n=2 Tax=Synergistaceae RepID=D1Y8J9_9BACT Length = 990 Score = 46.0 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 13/118 (11%) Query: 553 EIWKLDRSQEDYAEGLAKARDW---VSHDPLIAQLRSENVWTDINDRV----------VE 599 +I + S E W ++HD ++ +L +++R+ Sbjct: 639 DISVIATSPRGRGEVFTVTSRWDPSLAHDAVLRELMRGGQVYYLHNRIDDIEQIAARLAN 698 Query: 600 GGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQ 657 +RTA Q L+ F +G++ +L C+T +E G+D R TL + Sbjct: 699 RFPGHRTAVAHGQMGERELEKTMNEFYDGKIEILVCTTIIESGLDVPRANTLIVDDVR 756 >UniRef50_A5KKI8 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=A5KKI8_9FIRM Length = 1115 Score = 46.0 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 46/277 (16%), Positives = 84/277 (30%), Gaps = 36/277 (12%) Query: 592 DINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTL 651 D+ R+ A Q L+ F NG ++VL +T +E G+D T+ Sbjct: 792 DVAGRIQSLVPDANVAFAHGQMKERELEDIMYDFINGDIDVLVSTTIIETGLDIPNANTM 851 Query: 652 ASRSQQATIPGPEWHLNDELVVRSLG-YKTVELNEFIL----PAKATNAVERVKDIQIHK 706 + + L+ +R F+L A +R+ I+ Sbjct: 852 IIQDAD------RFGLSQLYQLRGRVGRSNRMAYAFLLYQRDKLLKEVAEKRLSAIREFT 905 Query: 707 QLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLK 766 L S D+ + + V Y D Y + +L +R LK Sbjct: 906 DLG---SGIKIAMRDLEIRGAGNLLGEAQSGHMEAVGY-DLYCK------MLNEAVRQLK 955 Query: 767 TKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFA---------------DQWFAA 811 TL L D P +++ + ++ A F Sbjct: 956 GGPEAETFTTLIDLNVDAYIPEYYIKNEYQKLDIYKRIAAIESEEELEDMTEELIDRFGD 1015 Query: 812 ALGRPVELTVFDSPRDIPHHRKLTVTFEDGQVLKIRF 848 + +L V S + + H +T + G+ ++ Sbjct: 1016 IPKKVQQLLVIASLKSLAHSVYVTAIEQKGEEIRFTM 1052 >UniRef50_C0GU79 Helicase superfamily 1 and 2 ATP-binding n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GU79_9DELT Length = 2094 Score = 46.0 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 23/92 (25%) Query: 586 SENVWTDINDRVVEGGFYY------------RTAEHSAQQSSERLQSYEKMFKNGQL--- 630 + ++ D G YY EH+ + + E+ FK Sbjct: 958 CQGIF----DPAERGADYYGRLYIRGRINRVVAREHTGLLDRDTREELEQKFKTPDAQRK 1013 Query: 631 ----NVLNCSTTMEMGVDTDRVMTLASRSQQA 658 N+L+ + T+EMG+D + S Sbjct: 1014 PWYPNLLSSTPTLEMGIDIGSLSATLQCSVPP 1045 >UniRef50_B2GL97 Transcription-repair coupling factor n=3 Tax=Actinomycetales RepID=B2GL97_KOCRD Length = 1254 Score = 46.0 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 45/289 (15%), Positives = 82/289 (28%), Gaps = 12/289 (4%) Query: 516 LDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWV 575 +D TP +P + + + T + + A R+ + Sbjct: 842 VDVLAMSATP-IPRTLEMSMTGIRETSTLATPPEERHPVLTYVGPYTNKQVSAAIRRELM 900 Query: 576 SHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNC 635 + + + E R A Q + RL+ F + +VL C Sbjct: 901 REGQVFFIHNRVSTIEAQAKELAELVPEARIAVAHGQMTESRLEQIIVDFWEKKFDVLVC 960 Query: 636 STTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNA 695 +T +E G+D TL H V R + A Sbjct: 961 TTIVETGLDIANANTLIVDHADRYGLSQL-HQLRGRVGRGRERAYAYFLYPAEKPLSETA 1019 Query: 696 VERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVAL 755 +ER+K + H +L S D+ + I GV + D YL Sbjct: 1020 LERLKAVAAHNELG---SGMQLAMKDLEIRGAGNLLGGEQSGHIAGVGF-DMYL------ 1069 Query: 756 ALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDF 804 L+G + + G L + P + + + + ++ Sbjct: 1070 RLVGEAVAEYRGDQDTGPAEMKIELPVNAHLPHDYVPGERLRLEAYRTI 1118 >UniRef50_UPI0000DB7B84 PREDICTED: similar to Probable ATP-dependent RNA helicase Dbp73D (DEAD box protein 73D), partial n=1 Tax=Apis mellifera RepID=UPI0000DB7B84 Length = 439 Score = 45.7 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 25/55 (45%) Query: 608 EHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPG 662 E SAQ S+ + F NG++ +L CS + GVD V + S I G Sbjct: 337 ELSAQLVSKEREKILNKFINGKIQILICSDALARGVDIPDVQLVVSYDLPKHING 391 >UniRef50_A7VP19 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VP19_9CLOT Length = 1149 Score = 45.3 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 62/220 (28%), Gaps = 25/220 (11%) Query: 611 AQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDE 670 + L + ++NVL C+T +E GVD V T+ H Sbjct: 858 GKMPEGELSEVWRRVMEQEINVLVCTTIIETGVDVPNVNTIIIEDADHMGLSQL-HQIRG 916 Query: 671 LVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEA 730 V RS L + + +R+ I+ + S F D+ Sbjct: 917 RVGRSSRRAYAYLTFTRNKVLSEISQKRLAAIREFTEFG---SGFKIAMRDLELRGAGNI 973 Query: 731 QSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPG-- 788 + + V Y D YL LLG + K + E+ + + Sbjct: 974 LGGEQHGHMETVGY-DMYL------RLLGEAVSEEKGEEASSYELECLVDVQVQAHIPEG 1026 Query: 789 -----------NRPFHDWMSIADFQDFADQWFAAALGRPV 817 R D S D D D+ G P Sbjct: 1027 YIESLSQRLEIYRRISDIRSQDDAMDVLDE-LIDRFGEPP 1065 >UniRef50_UPI000180C217 PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 n=1 Tax=Ciona intestinalis RepID=UPI000180C217 Length = 636 Score = 45.3 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 27/62 (43%) Query: 599 EGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQA 658 EG + E ++ S + K F +G++NVL CS +M G+D V + Sbjct: 499 EGKKEFICTEFASHLPSSKRGKVLKDFISGKINVLVCSDSMARGLDVPCVEHVILYDVPP 558 Query: 659 TI 660 I Sbjct: 559 LI 560 >UniRef50_A9VAJ5 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9VAJ5_MONBE Length = 2519 Score = 45.3 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 7/111 (6%) Query: 596 RVVEGGFYY---RTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLA 652 RV Y+ AE S+ QS + K F G+L+VL CS M G+D V T+ Sbjct: 465 RVTALLQYFDELSVAEVSSSQSQQENTRALKQFAAGELSVLVCSDNMARGIDIKNVETVI 524 Query: 653 SRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQ 703 S A + V R+ + +LP + + A+E +++ Sbjct: 525 SYDAPAFP--KTYIHRVGRVGRAGAHGE--AYTLVLPQQLSAALEPGIEVE 571 >UniRef50_A1RZW9 DEAD/DEAH box helicase domain protein n=1 Tax=Thermofilum pendens Hrk 5 RepID=A1RZW9_THEPD Length = 854 Score = 45.3 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 34/227 (14%), Positives = 69/227 (30%), Gaps = 18/227 (7%) Query: 609 HSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLN 668 H + + + E+ FK+ ++ + C+ T+E+G+D V + + ++P Sbjct: 339 HHGSMGASKRREAERKFKDREVKAVVCTRTLELGIDVGSVERVF-QVGSPSLPAYF---- 393 Query: 669 DELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHE 728 V ++ E L N + I LS G+ + Sbjct: 394 -AQRVGRASHRPGEPARGTLVCLDMNDLVESAAI---------LSMLGRGSFGARRGPPP 443 Query: 729 EAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPG 788 + + + D+ LLGS+L + GA L L + Sbjct: 444 AMDLALRQALALVLQHGDK-AGAQAVAELLGSLLSHVPASWGLGAREALRVLEERGLVEE 502 Query: 789 NRPFHDWMSIADFQDFADQWFAAALGRPVELTVFDSPRDIP--HHRK 833 + A ++ A T+ ++ H R+ Sbjct: 503 REVVDVYGERARVLRLGGRFPEAWRKIGAFFTMIPERSELEVRHGRE 549 >UniRef50_C3Z6D9 Putative uncharacterized protein n=2 Tax=Eumetazoa RepID=C3Z6D9_BRAFL Length = 806 Score = 44.9 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 24/54 (44%) Query: 607 AEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATI 660 AE S+ +R F+ G++ ++ CS M G+D + V + S + Sbjct: 637 AEFSSNLPPDRRTKILTKFRTGKIQLIVCSDAMARGMDVEGVEVVISYDVPPYV 690 >UniRef50_A8L3E8 Helicase superfamily 1 and 2 ATP-binding n=1 Tax=Frankia sp. EAN1pec RepID=A8L3E8_FRASN Length = 2224 Score = 44.9 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 16/81 (19%) Query: 596 RVVEGGFYYR------------TAEHSAQQSSERLQSYEKMFKNGQ----LNVLNCSTTM 639 R G YYR EH++ + E+ F+ G NVL + T+ Sbjct: 1042 RARRGDDYYRHLYRSVDMRRVVAHEHTSLLPDDVRLDVERQFREGGGPAVPNVLAATPTL 1101 Query: 640 EMGVDTDRVMTLASRSQQATI 660 E+G+D + T+ S T+ Sbjct: 1102 ELGIDIGDLSTVMLGSLPRTV 1122 >UniRef50_A5UXD6 DEAD/DEAH box helicase domain protein n=2 Tax=Roseiflexus RepID=A5UXD6_ROSS1 Length = 868 Score = 44.9 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 51/142 (35%), Gaps = 7/142 (4%) Query: 557 LDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSE 616 R++ L AR+ + ++ R ++ +DI + + A + A + E Sbjct: 305 FTRTRRSAELVLRYAREALENNAPPDNGRDRSIRSDITE--TRQPDTGQIAAYRAGYTVE 362 Query: 617 RLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLAS-----RSQQATIPGPEWHLNDEL 671 + E+ F G L L + +E+GVD V + A + Sbjct: 363 ERRRLEQAFAGGDLRGLVSTNALELGVDIGGVDAVVMGGFPGTIASAWQQAGRAGRSQGQ 422 Query: 672 VVRSLGYKTVELNEFILPAKAT 693 + +L + L++F + A Sbjct: 423 SLAALVAQDDPLDQFYMRHPAE 444 >UniRef50_B8D5X5 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfurococcus kamchatkensis 1221n RepID=B8D5X5_DESK1 Length = 932 Score = 44.9 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 23/44 (52%) Query: 609 HSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLA 652 H S + E FK G+LN+L +++ME+G+D + + Sbjct: 283 HHGSLSRSHREEVEAGFKQGELNILVATSSMELGIDIGHIDFVI 326 >UniRef50_A9WHG9 Transcription-repair coupling factor n=3 Tax=Chloroflexus RepID=A9WHG9_CHLAA Length = 1185 Score = 44.9 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 61/186 (32%), Gaps = 11/186 (5%) Query: 593 INDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLA 652 + +R+ R A Q + L+ F G+ +VL C+T +E G+D T+ Sbjct: 839 VAERLRRLVPEARIAVGHGQLAERELEQVMIDFFEGRYDVLVCTTIIESGLDVPNANTII 898 Query: 653 SRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPL 712 + L + R L +A R++ IQ +L Sbjct: 899 IDDATNYGLAQLYQLRGRVG-RGATRAYAYLLYNAARVMTNDARLRLEAIQEATELG--- 954 Query: 713 SQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKTKLTDG 772 + F D+ + I V + D Y LL +R LK + + Sbjct: 955 AGFRIAMRDLEIRGAGNLLGAEQSGHIAAVGF-DLY------SRLLEQAVRKLKQDVDEL 1007 Query: 773 AEVTLD 778 AE D Sbjct: 1008 AETATD 1013 >UniRef50_UPI0000E4A052 PREDICTED: similar to DEAD/H box 51 RNA helicase, partial n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E4A052 Length = 720 Score = 44.5 bits (103), Expect = 0.017, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 25/52 (48%) Query: 607 AEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQA 658 +E S+ S Q+ K FK G++ +L CS M G+D + V + S Sbjct: 621 SEFSSNLSQSERQNILKQFKAGKIQILVCSDAMARGMDIENVRCVISYDLPP 672 >UniRef50_B6YWG2 Large helicase-related protein n=1 Tax=Thermococcus onnurineus NA1 RepID=B6YWG2_THEON Length = 925 Score = 44.5 bits (103), Expect = 0.021, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 22/44 (50%) Query: 609 HSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLA 652 H S E E+ K G++ L C+++ME+G+D V + Sbjct: 275 HHGSLSKEARIKAERALKEGKIKALICTSSMELGIDIGDVDVVI 318 >UniRef50_A9KJU0 DEAD/DEAH box helicase domain protein n=3 Tax=Clostridiales RepID=A9KJU0_CLOPH Length = 1381 Score = 44.1 bits (102), Expect = 0.024, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 35/98 (35%), Gaps = 3/98 (3%) Query: 609 HSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGP--EWH 666 H S E+ E+ ++G+L +L +++ME+G+D + + TI Sbjct: 307 HHGSLSKEQRLEVEQSLRDGKLRLLCATSSMELGIDVGEIDEVFQIGCPRTISSTMQRLG 366 Query: 667 LNDELVVRSLGYKTVELNEFI-LPAKATNAVERVKDIQ 703 R + + L T V + ++ Sbjct: 367 RAGHNPDRVSVMQMFPRSPIEGLYCGLTAEVAKQGRVE 404 >UniRef50_A8RJ57 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RJ57_9CLOT Length = 1405 Score = 43.7 bits (101), Expect = 0.029, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%) Query: 609 HSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGP 663 H S E+ E+ + G+L +L +++ME+G+D V + TI Sbjct: 311 HHGSLSKEQRDEVERDLREGRLRLLCATSSMELGIDVGDVEQVLQVGCPRTISST 365 >UniRef50_B9LRP7 DEAD/DEAH box helicase domain protein n=7 Tax=Halobacteriaceae RepID=B9LRP7_HALLT Length = 972 Score = 43.7 bits (101), Expect = 0.034, Method: Composition-based stats. Identities = 39/194 (20%), Positives = 66/194 (34%), Gaps = 24/194 (12%) Query: 476 QLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEH 535 QLT L L+ F T + K L + K P P FE Sbjct: 178 QLTVGLERLRRVAGPFQRIGLSATVGTPEEV------GKFLVGSGKR-DPDHPGDREFEI 230 Query: 536 LTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDIND 595 + +A + + P + + A A + ++A S ++ + Sbjct: 231 VEVAAGTRTDVRVLDPPITDRDTTLAGELAVDETTASHVRTIREIVADHESTLIFVNTRQ 290 Query: 596 RVVEGGFYYRT-AE----------------HSAQQSSERLQSYEKMFKNGQLNVLNCSTT 638 G ++T AE H S + E FK+G+L+ L C+++ Sbjct: 291 TAEALGSRFKTLAEREEKAGSIDDPTEIEVHHGSLSKDVRIDVEDRFKSGELDGLVCTSS 350 Query: 639 MEMGVDTDRVMTLA 652 ME+G+D RV + Sbjct: 351 MELGIDVGRVDHVV 364 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P39393 Putative uncharacterized protein yjiV n=34 Tax=E... 917 0.0 UniRef50_D0KMA4 DEAD/DEAH box helicase domain protein n=9 Tax=Ba... 665 0.0 UniRef50_B7VNH2 Putative uncharacterized protein n=1 Tax=Vibrio ... 587 e-165 UniRef50_B5WD63 DEAD/DEAH box helicase domain protein n=1 Tax=Bu... 577 e-163 UniRef50_A1K7X0 Putative helicase related protein n=3 Tax=Proteo... 522 e-146 UniRef50_A6BZ17 Putative uncharacterized protein n=1 Tax=Plancto... 508 e-142 UniRef50_Q5WTN0 Putative uncharacterized protein n=1 Tax=Legione... 491 e-137 UniRef50_B1ITS0 Helicase superfamily 1 and 2 ATP-binding n=14 Ta... 468 e-130 UniRef50_B3Q0I0 Hypothetical conserved protein n=2 Tax=Rhizobium... 446 e-123 UniRef50_A3EKW9 Dead/deah box helicase domain protein n=3 Tax=Vi... 444 e-123 UniRef50_C3MEZ4 ATP-dependent helicase n=1 Tax=Rhizobium sp. NGR... 444 e-122 UniRef50_A0KWV0 DEAD/DEAH box helicase domain protein n=2 Tax=Ga... 427 e-117 UniRef50_A5P8I3 Putative uncharacterized protein n=1 Tax=Erythro... 419 e-115 UniRef50_Q0FU13 Putative uncharacterized protein n=1 Tax=Roseova... 407 e-111 UniRef50_A1U8P2 Helicase domain protein n=1 Tax=Marinobacter aqu... 399 e-109 UniRef50_B0MUI1 Putative uncharacterized protein n=3 Tax=cellula... 373 e-101 UniRef50_D1P9G0 Putative DEAD/DEAH box helicase n=1 Tax=Prevotel... 325 5e-87 UniRef50_UPI0001BC7B8F putative helicase related protein n=1 Tax... 312 3e-83 UniRef50_Q3M825 DEAD/DEAH box helicase-like n=1 Tax=Anabaena var... 292 4e-77 UniRef50_B4VWS3 Type III restriction enzyme, res subunit family ... 289 4e-76 UniRef50_Q0B058 Putative helicase n=1 Tax=Syntrophomonas wolfei ... 283 1e-74 UniRef50_B1L4S0 DEAD/DEAH box helicase domain protein n=1 Tax=Ca... 281 8e-74 UniRef50_Q2SCB8 Distinct helicase family with a unique C-termina... 265 8e-69 UniRef50_UPI00017895CA DEAD/DEAH box helicase domain protein n=1... 262 6e-68 UniRef50_B0K504 DEAD/DEAH box helicase domain protein n=9 Tax=Ba... 260 2e-67 UniRef50_A9B5T9 Helicase superfamily 1 and 2 ATP-binding n=1 Tax... 259 4e-67 UniRef50_Q2JN13 Putative helicase n=1 Tax=Synechococcus sp. JA-2... 257 1e-66 UniRef50_Q8NSE5 Distinct helicase family with a unique C-termina... 255 5e-66 UniRef50_D1WRW1 Serine/threonine protein kinase n=3 Tax=Streptom... 254 1e-65 UniRef50_UPI0001AF474B DEAD/DEAH box helicase domain-containing ... 254 1e-65 UniRef50_A8MHW5 DEAD/DEAH box helicase domain protein n=1 Tax=Al... 252 4e-65 UniRef50_D1CII2 DEAD/DEAH box helicase domain protein n=1 Tax=Th... 247 2e-63 UniRef50_A6DRF3 Putative helicase n=1 Tax=Lentisphaera araneosa ... 245 5e-63 UniRef50_C0Q9L0 Dbp n=1 Tax=Desulfobacterium autotrophicum HRM2 ... 242 4e-62 UniRef50_A1B283 DEAD/DEAH box helicase domain protein n=4 Tax=Al... 241 7e-62 UniRef50_B2JBC8 DEAD/DEAH box helicase domain protein n=4 Tax=Cy... 241 8e-62 UniRef50_UPI000185C0CA conserved hypothetical protein n=1 Tax=Co... 240 1e-61 UniRef50_C9RZB7 DEAD/DEAH box helicase domain protein n=2 Tax=Ge... 239 3e-61 UniRef50_C8PSY6 Dead/deah box helicase domain protein n=1 Tax=Tr... 236 2e-60 UniRef50_C8XHE6 Helicase domain protein n=1 Tax=Nakamurella mult... 235 7e-60 UniRef50_A6G8L6 DEAD/DEAH box helicase domain protein n=1 Tax=Pl... 234 1e-59 UniRef50_A0QRV7 DEAD/DEAH box helicase n=2 Tax=Actinomycetales R... 233 3e-59 UniRef50_A9KIX6 DEAD/DEAH box helicase domain protein n=1 Tax=Cl... 232 6e-59 UniRef50_D0HYY2 Helicase n=3 Tax=Proteobacteria RepID=D0HYY2_VIBCH 231 7e-59 UniRef50_B4V8K6 DEAD/DEAH box helicase domain containing protein... 230 2e-58 UniRef50_C6BED1 DEAD/DEAH box helicase domain protein n=2 Tax=Be... 228 8e-58 UniRef50_Q4KCB1 Helicase n=3 Tax=Gammaproteobacteria RepID=Q4KCB... 224 1e-56 UniRef50_B9B1G2 Helicase n=1 Tax=Burkholderia multivorans CGD1 R... 218 1e-54 UniRef50_A1W4A0 DEAD/DEAH box helicase domain protein n=4 Tax=Pr... 217 1e-54 UniRef50_Q0AZK9 Helicase n=1 Tax=Syntrophomonas wolfei subsp. wo... 217 2e-54 UniRef50_C6CEX4 DEAD/DEAH box helicase domain protein n=3 Tax=Ga... 216 4e-54 UniRef50_B5J454 DEAD/DEAH box helicase domain protein n=1 Tax=Oc... 215 5e-54 UniRef50_A9CY68 DEAD/DEAH box helicase domain protein n=1 Tax=Ho... 213 2e-53 UniRef50_A8KF74 Dead/deah box helicase domain protein n=2 Tax=ps... 213 3e-53 UniRef50_A8EC51 Probable ATP-dependent helicase Lhr n=2 Tax=pseu... 213 3e-53 UniRef50_A1UB29 DEAD/DEAH box helicase domain protein n=2 Tax=My... 212 5e-53 UniRef50_A3V5V1 Probable ATP-dependent helicase Lhr n=1 Tax=Lokt... 212 6e-53 UniRef50_UPI0001C16AE3 DEAD/DEAH box helicase domain protein n=2... 211 9e-53 UniRef50_Q92JT3 Putative uncharacterized protein n=1 Tax=Sinorhi... 210 2e-52 UniRef50_B1I5A5 DEAD/DEAH box helicase domain protein n=1 Tax=Ca... 209 4e-52 UniRef50_B5PIM9 Helicase n=2 Tax=Salmonella enterica subsp. ente... 208 6e-52 UniRef50_D0XMD3 DEAD/DEAH box helicase domain protein n=1 Tax=Br... 208 1e-51 UniRef50_Q07PM3 DEAD/DEAH box helicase domain protein n=1 Tax=Rh... 205 1e-50 UniRef50_A4VQ18 Putative helicase n=1 Tax=Pseudomonas stutzeri A... 201 1e-49 UniRef50_B4S9Y6 DEAD/DEAH box helicase domain protein n=3 Tax=Ba... 201 1e-49 UniRef50_D2QY08 DEAD/DEAH box helicase domain protein n=1 Tax=Pi... 200 2e-49 UniRef50_A7HNV8 DEAD/DEAH box helicase domain protein n=3 Tax=Th... 197 2e-48 UniRef50_A9VZE2 DEAD/DEAH box helicase domain protein n=2 Tax=Me... 195 7e-48 UniRef50_C8NS10 Helicase n=4 Tax=Corynebacterium RepID=C8NS10_COREF 195 8e-48 UniRef50_B2JC69 Helicase superfamily 1 and 2 ATP-binding n=1 Tax... 194 1e-47 UniRef50_UPI0001C373E9 helicase n=1 Tax=Ruminococcus flavefacien... 190 2e-46 UniRef50_Q7NH01 Gll2736 protein n=2 Tax=Cyanobacteria RepID=Q7NH... 190 2e-46 UniRef50_Q3IPC2 Predicted helicase n=3 Tax=Halobacteriaceae RepI... 189 5e-46 UniRef50_A1U8P4 DEAD/DEAH box helicase domain protein n=2 Tax=Al... 188 1e-45 UniRef50_C6PTC5 Helicase domain protein n=1 Tax=Clostridium carb... 182 7e-44 UniRef50_D1BVL7 DEAD/DEAH box helicase domain protein n=1 Tax=Xy... 177 2e-42 UniRef50_A5UPV6 DEAD/DEAH box helicase domain protein n=1 Tax=Ro... 173 4e-41 UniRef50_C7HAN6 Putative helicase n=1 Tax=Faecalibacterium praus... 173 4e-41 UniRef50_C8W5N0 DEAD/DEAH box helicase domain protein n=2 Tax=Pe... 172 5e-41 UniRef50_A9AUS0 DEAD/DEAH box helicase domain protein n=1 Tax=He... 172 7e-41 UniRef50_C1XMC1 Helicase family protein with metal-binding cyste... 171 8e-41 UniRef50_C7MQ55 Helicase family protein with metal-binding cyste... 171 1e-40 UniRef50_C9NK45 DEAD/DEAH box helicase domain protein n=1 Tax=St... 169 5e-40 UniRef50_D0LMZ5 DEAD/DEAH box helicase domain protein n=1 Tax=Ha... 168 8e-40 UniRef50_Q2SFN9 Distinct helicase family with a unique C-termina... 166 3e-39 UniRef50_A1SC23 DEAD/DEAH box helicase domain protein n=3 Tax=Ac... 165 7e-39 UniRef50_D2NP15 Transcription-repair coupling factor n=2 Tax=Rot... 164 2e-38 UniRef50_Q2GBH3 DEAD/DEAH box helicase-like protein n=1 Tax=Novo... 162 6e-38 UniRef50_Q0YQW0 Helicase-like:Type III restriction enzyme, res s... 161 1e-37 UniRef50_A3EKW8 Copper-binding protein n=1 Tax=Vibrio cholerae V... 160 3e-37 UniRef50_A0L7C1 DEAD/DEAH box helicase domain protein n=1 Tax=Ma... 158 9e-37 UniRef50_A4XIS4 Transcription-repair coupling factor n=2 Tax=Clo... 157 2e-36 UniRef50_B1ITR7 Helicase superfamily 1 and 2 ATP-binding n=17 Ta... 154 1e-35 UniRef50_Q1IY46 ATP-dependent RNA helicase, intein and Vcr-like ... 154 1e-35 UniRef50_Q89AK2 Transcription-repair-coupling factor n=3 Tax=Gam... 151 1e-34 UniRef50_C3Q570 Helicase n=1 Tax=Bacteroides sp. 9_1_42FAA RepID... 148 7e-34 UniRef50_C8VVH8 DEAD/DEAH box helicase domain protein n=1 Tax=De... 148 1e-33 UniRef50_D0TGP7 DEAD/DEAH box helicase domain-containing protein... 146 6e-33 UniRef50_Q4C992 Helicase, C-terminal:DEAD/DEAH box helicase, N-t... 145 8e-33 UniRef50_B5HBR0 Truncated helicase superfamily 1 and 2 ATP-bindi... 143 2e-32 UniRef50_A5UZG2 Transcription-repair coupling factor n=2 Tax=Ros... 141 1e-31 UniRef50_C9ZFT8 Putative RNA helicase n=1 Tax=Streptomyces scabi... 141 2e-31 UniRef50_C9YW00 Putative RNA helicase n=1 Tax=Streptomyces scabi... 140 3e-31 UniRef50_Q5P8U3 Helicase (Putative RNA helicase),fragment n=1 Ta... 138 8e-31 UniRef50_Q881M9 Helicase domain protein n=1 Tax=Pseudomonas syri... 137 2e-30 UniRef50_Q12A09 Transcription-repair coupling factor n=2 Tax=Bur... 136 3e-30 UniRef50_UPI000050FC02 helicase superfamily protein n=1 Tax=Brev... 136 5e-30 UniRef50_A6BZ20 Putative RNA helicase n=1 Tax=Planctomyces maris... 136 5e-30 UniRef50_C1XVJ6 Helicase family protein with metal-binding cyste... 134 1e-29 UniRef50_B5WD80 DEAD/DEAH box helicase domain protein n=1 Tax=Bu... 133 3e-29 UniRef50_A8M876 Helicase superfamily 1 and 2 ATP-binding n=2 Tax... 127 1e-27 UniRef50_A1U089 DEAD/DEAH box helicase domain protein n=1 Tax=Ma... 127 2e-27 UniRef50_C0GNR7 DEAD/DEAH box helicase domain protein n=1 Tax=De... 122 8e-26 UniRef50_B5JHN5 Helicase conserved C-terminal domain protein n=1... 122 9e-26 UniRef50_B6ASD7 RNA helicase n=1 Tax=Leptospirillum sp. Group II... 119 7e-25 Sequences not found previously or not previously below threshold: UniRef50_A4SC91 DEAD/DEAH box helicase domain protein n=1 Tax=Ch... 180 2e-43 UniRef50_C4UUG8 Helicase n=1 Tax=Yersinia rohdei ATCC 43380 RepI... 171 2e-40 UniRef50_C1ADN7 Putative uncharacterized protein n=1 Tax=Gemmati... 164 9e-39 UniRef50_C2G1Z0 DEAD/DEAH box helicase domain protein (Fragment)... 156 3e-36 UniRef50_A5KKI8 Putative uncharacterized protein n=4 Tax=Clostri... 150 2e-34 UniRef50_Q3AFL2 Transcription-repair coupling factor n=1 Tax=Car... 150 2e-34 UniRef50_B5CPD5 Putative uncharacterized protein n=4 Tax=Clostri... 150 2e-34 UniRef50_C0GU79 Helicase superfamily 1 and 2 ATP-binding n=1 Tax... 150 3e-34 UniRef50_Q2JKX2 ATP-dependent helicase, DEAD/DEAH box family n=6... 149 4e-34 UniRef50_A9KR33 Transcription-repair coupling factor n=11 Tax=Ba... 148 1e-33 UniRef50_UPI000196BD8D hypothetical protein CATMIT_02256 n=1 Tax... 147 2e-33 UniRef50_A3DIQ2 Transcription-repair coupling factor n=7 Tax=Clo... 144 2e-32 UniRef50_C3RLI7 Transcription-repair coupling factor n=3 Tax=Bac... 143 2e-32 UniRef50_C0GIY9 Transcription-repair coupling factor n=2 Tax=Det... 143 3e-32 UniRef50_A9WU24 Transcription-repair coupling factor n=68 Tax=Ac... 143 3e-32 UniRef50_A1HRU9 Transcription-repair coupling factor n=2 Tax=Vei... 143 3e-32 UniRef50_C5EM54 Transcription-repair coupling factor n=3 Tax=Clo... 143 4e-32 UniRef50_B8D013 Transcription-repair coupling factor n=1 Tax=Hal... 142 5e-32 UniRef50_C4LHL4 Transcription-repair coupling factor n=5 Tax=Bac... 142 8e-32 UniRef50_B2GL97 Transcription-repair coupling factor n=3 Tax=Act... 142 8e-32 UniRef50_D2RAQ2 Transcription-repair coupling factor n=6 Tax=Act... 141 1e-31 UniRef50_A9WHG9 Transcription-repair coupling factor n=3 Tax=Chl... 141 1e-31 UniRef50_C4ZBV9 Transcription-repair coupling factor n=6 Tax=Clo... 141 1e-31 UniRef50_C4G278 Putative uncharacterized protein n=1 Tax=Abiotro... 140 2e-31 UniRef50_A8RWH1 Putative uncharacterized protein n=1 Tax=Clostri... 140 3e-31 UniRef50_B3PFQ1 Transcription-repair coupling protein Mfd n=58 T... 139 4e-31 UniRef50_A0Z3W5 Putative helicase n=1 Tax=marine gamma proteobac... 138 9e-31 UniRef50_C4Z4L4 Transcription-repair coupling factor (Superfamil... 138 1e-30 UniRef50_A5N4J1 Mfd n=34 Tax=Clostridium RepID=A5N4J1_CLOK5 137 2e-30 UniRef50_C4DT42 Transcription-repair coupling factor Mfd n=29 Ta... 137 2e-30 UniRef50_A8MK41 Transcription-repair coupling factor n=15 Tax=Cl... 137 2e-30 UniRef50_A6DRD9 Putative RNA helicase n=1 Tax=Lentisphaera arane... 136 5e-30 UniRef50_B1XUT3 Transcription-repair coupling factor n=24 Tax=Be... 135 7e-30 UniRef50_D1CBU7 Transcription-repair coupling factor n=1 Tax=The... 135 9e-30 UniRef50_P64327 Transcription-repair-coupling factor n=40 Tax=Co... 134 1e-29 UniRef50_B9KYW6 Transcription-repair coupling factor n=1 Tax=The... 134 1e-29 UniRef50_B0TBA7 Transcription-repair coupling factor n=9 Tax=Fir... 134 1e-29 UniRef50_D1C4G9 Transcription-repair coupling factor n=1 Tax=Sph... 133 2e-29 UniRef50_Q6ARL4 Related to transcription-repair coupling factor ... 133 2e-29 UniRef50_C9RA21 Transcription-repair coupling factor n=1 Tax=Amm... 133 4e-29 UniRef50_C7MC76 Transcription-repair coupling factor Mfd n=9 Tax... 132 4e-29 UniRef50_UPI00016C571B transcription-repair coupling factor n=1 ... 132 5e-29 UniRef50_P45128 Transcription-repair-coupling factor n=72 Tax=ce... 132 5e-29 UniRef50_C2KYF4 Transcription-repair coupling factor n=1 Tax=Ori... 132 5e-29 UniRef50_C8P217 Transcription-repair-coupling factor (ATP-depend... 131 1e-28 UniRef50_C4GD25 Putative uncharacterized protein n=1 Tax=Shuttle... 131 1e-28 UniRef50_B0S0H3 Transcription-repair coupling factor n=3 Tax=Clo... 131 2e-28 UniRef50_C6A8D1 Transcription-repair coupling factor n=17 Tax=Ac... 131 2e-28 UniRef50_Q6FCF0 Transcription-repair coupling protein n=17 Tax=G... 130 2e-28 UniRef50_C0R051 Transcription-repair coupling factor n=3 Tax=Bra... 130 3e-28 UniRef50_D2BIN1 Transcription-repair coupling factor (Superfamil... 130 3e-28 UniRef50_A6CB65 Transcription-repair coupling factor n=2 Tax=Pla... 129 4e-28 UniRef50_B2A3P0 Transcription-repair coupling factor n=1 Tax=Nat... 129 5e-28 UniRef50_P30958 Transcription-repair-coupling factor n=202 Tax=B... 129 5e-28 UniRef50_Q12NL8 Transcription-repair coupling factor n=2 Tax=She... 129 5e-28 UniRef50_Q1NPX2 Transcription-repair coupling factor n=3 Tax=del... 129 7e-28 UniRef50_C6P0P2 Transcription-repair coupling factor n=5 Tax=Bet... 128 8e-28 UniRef50_C7TMD0 Transcription-repair coupling factor n=18 Tax=La... 127 1e-27 UniRef50_A0Q6R1 Transcription-repair coupling factor n=19 Tax=Fr... 127 1e-27 UniRef50_UPI0001C15DBE DEAD/DEAH box helicase domain protein n=1... 127 1e-27 UniRef50_Q2SWT7 Transcription-repair coupling factor n=107 Tax=P... 127 1e-27 UniRef50_C0E926 Putative uncharacterized protein n=1 Tax=Clostri... 127 2e-27 UniRef50_C8W311 Transcription-repair coupling factor n=1 Tax=Des... 127 2e-27 UniRef50_B5JG36 Transcription-repair coupling factor n=1 Tax=Ver... 127 2e-27 UniRef50_B3DY76 Transcription-repair coupling factor mfd (Superf... 127 2e-27 UniRef50_A2RH86 Transcription-repair coupling factor (TRCF) n=71... 127 2e-27 UniRef50_UPI00016C0762 transcription-repair coupling factor n=1 ... 127 2e-27 UniRef50_Q55750 Transcription-repair-coupling factor n=43 Tax=Cy... 127 2e-27 UniRef50_P37474 Transcription-repair-coupling factor n=170 Tax=B... 127 3e-27 UniRef50_Q03SZ8 Transcription-repair coupling factor (Superfamil... 127 3e-27 UniRef50_B1I198 Transcription-repair coupling factor n=2 Tax=Pep... 126 3e-27 UniRef50_Q83N19 Transcription-repair coupling factor n=4 Tax=Bac... 126 3e-27 UniRef50_B0MQZ9 Putative uncharacterized protein n=3 Tax=Clostri... 126 3e-27 UniRef50_A8F4U5 DEAD/DEAH box helicase domain protein n=1 Tax=Th... 126 4e-27 UniRef50_C4WBZ1 Transcription-repair coupling factor n=3 Tax=Sta... 126 4e-27 UniRef50_Q1GBP3 Transcription-repair coupling factor n=2 Tax=Lac... 126 4e-27 UniRef50_B8FZB7 Transcription-repair coupling factor n=2 Tax=Des... 126 5e-27 UniRef50_A5WFY6 Transcription-repair coupling factor n=21 Tax=Pr... 125 6e-27 UniRef50_A8L3E8 Helicase superfamily 1 and 2 ATP-binding n=1 Tax... 125 7e-27 UniRef50_A8SUU5 Putative uncharacterized protein n=1 Tax=Coproco... 125 7e-27 UniRef50_Q39PS2 Transcription-repair coupling factor n=4 Tax=Del... 125 8e-27 UniRef50_A5CVJ9 Transcription-repair coupling factor n=4 Tax=Bac... 125 9e-27 UniRef50_A1KUB2 Transcription-repair coupling factor n=31 Tax=ce... 125 1e-26 UniRef50_A9A0K9 Transcription-repair coupling factor n=1 Tax=Des... 124 1e-26 UniRef50_B1LBI8 DEAD/DEAH box helicase domain protein n=5 Tax=Th... 124 1e-26 UniRef50_C9KMW0 Transcription-repair coupling factor n=3 Tax=Vei... 124 2e-26 UniRef50_D2R0K5 Transcription-repair coupling factor n=1 Tax=Pir... 124 2e-26 UniRef50_A2BWG1 Transcriptional-repair coupling factor n=11 Tax=... 124 2e-26 UniRef50_B9XRJ1 Transcription-repair coupling factor n=1 Tax=bac... 123 3e-26 UniRef50_B9K8D6 Transcription-repair coupling factor n=1 Tax=The... 123 3e-26 UniRef50_B8FKE5 Transcription-repair coupling factor n=1 Tax=Des... 122 5e-26 UniRef50_Q04S99 Transcription-repair coupling factor n=6 Tax=Lep... 122 6e-26 UniRef50_C8NI79 Transcription-repair coupling factor n=3 Tax=Fir... 122 6e-26 UniRef50_C5CIP9 Transcription-repair coupling factor n=1 Tax=Kos... 122 7e-26 UniRef50_Q3AK28 Transcription-repair coupling factor n=6 Tax=Cya... 122 7e-26 UniRef50_A6DFV9 Transcription-repair coupling factor, MFD (Super... 122 8e-26 UniRef50_A9B116 Transcription-repair coupling factor n=1 Tax=Her... 122 9e-26 UniRef50_C0QJ97 Mfd n=1 Tax=Desulfobacterium autotrophicum HRM2 ... 121 9e-26 UniRef50_C8WGM0 Transcription-repair coupling factor n=3 Tax=Cor... 121 1e-25 UniRef50_Q1IHV1 Transcription-repair coupling factor n=2 Tax=Aci... 121 1e-25 UniRef50_A0LNZ8 Transcription-repair coupling factor n=1 Tax=Syn... 121 1e-25 UniRef50_B4CX01 Transcription-repair coupling factor n=1 Tax=Cht... 121 1e-25 UniRef50_D1VSM6 Transcription-repair coupling factor n=1 Tax=Pep... 121 2e-25 UniRef50_B6BUC0 Transcription-repair coupling factor n=1 Tax=bet... 121 2e-25 UniRef50_Q6MB04 Probable transcription-repair coupling factor mf... 120 2e-25 UniRef50_C2KSG9 Possible transcription-repair coupling factor n=... 120 2e-25 UniRef50_Q7UQN7 Transcription-repair coupling factor n=1 Tax=Rho... 120 2e-25 UniRef50_UPI0001C317DD transcription-repair coupling factor n=1 ... 120 3e-25 UniRef50_B0VGK6 Putative transcription-repair coupling factor n=... 120 3e-25 UniRef50_Q31GG0 Transcription-repair coupling factor n=59 Tax=Ga... 120 3e-25 UniRef50_B1C986 Putative uncharacterized protein n=1 Tax=Anaerof... 119 4e-25 UniRef50_O52236 Transcription-repair-coupling factor n=6 Tax=Myx... 119 5e-25 UniRef50_A9BHZ6 DEAD/DEAH box helicase domain protein n=1 Tax=Pe... 118 8e-25 UniRef50_B3T2A9 Putative TRCF domain protein n=2 Tax=prokaryotic... 118 9e-25 UniRef50_A4A0Y1 Transcription-repair coupling factor n=1 Tax=Bla... 118 9e-25 UniRef50_B5YFB2 Transcription-repair coupling factor n=2 Tax=Dic... 118 9e-25 UniRef50_A8RAG4 Putative uncharacterized protein n=2 Tax=unclass... 118 1e-24 UniRef50_Q6MGN1 Transcription-repair coupling factor n=2 Tax=Pro... 118 1e-24 UniRef50_A0L867 Transcription-repair coupling factor n=2 Tax=Bac... 118 1e-24 UniRef50_C7H318 Transcription-repair coupling factor n=3 Tax=Rum... 117 1e-24 UniRef50_Q2RMB9 Transcription-repair coupling factor n=1 Tax=Moo... 117 2e-24 UniRef50_A1ALB0 Transcription-repair coupling factor n=8 Tax=Des... 117 2e-24 UniRef50_Q1AXK2 Transcription-repair coupling factor n=1 Tax=Rub... 117 2e-24 UniRef50_Q1Q1A4 Similar to transcription-repair coupling factor ... 117 2e-24 UniRef50_C7RHN4 Transcription-repair coupling factor n=3 Tax=Ana... 117 2e-24 UniRef50_A7VP19 Putative uncharacterized protein n=1 Tax=Clostri... 117 2e-24 UniRef50_D2RLM5 Transcription-repair coupling factor n=2 Tax=Aci... 117 2e-24 UniRef50_A9NE83 Transcription-repair coupling factor (Superfamil... 116 3e-24 UniRef50_C1F915 Transcription-repair coupling factor n=1 Tax=Aci... 116 3e-24 UniRef50_C2D9Q8 Possible transcription-repair coupling factor n=... 116 3e-24 UniRef50_D1BNT3 Transcription-repair coupling factor n=3 Tax=Vei... 116 5e-24 UniRef50_Q0B0S4 Transcription-repair coupling factor-superfamily... 116 5e-24 UniRef50_P57381 Transcription-repair-coupling factor n=4 Tax=Buc... 116 6e-24 UniRef50_D1N873 Transcription-repair coupling factor n=1 Tax=Vic... 115 7e-24 UniRef50_UPI0001745840 transcription-repair coupling factor n=1 ... 115 7e-24 >UniRef50_P39393 Putative uncharacterized protein yjiV n=34 Tax=Enterobacteriaceae RepID=YJIV_ECOLI Length = 906 Score = 917 bits (2369), Expect = 0.0, Method: Composition-based stats. Identities = 906/906 (100%), Positives = 906/906 (100%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHD 60 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHD Sbjct: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHD 60 Query: 61 ATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCS 120 ATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCS Sbjct: 61 ATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCS 120 Query: 121 ASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRR 180 ASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRR Sbjct: 121 ASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRR 180 Query: 181 LITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARA 240 LITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARA Sbjct: 181 LITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARA 240 Query: 241 KQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKER 300 KQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKER Sbjct: 241 KQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKER 300 Query: 301 ADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGL 360 ADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGL Sbjct: 301 ADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGL 360 Query: 361 EKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVRNP 420 EKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVRNP Sbjct: 361 EKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVRNP 420 Query: 421 ESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGP 480 ESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGP Sbjct: 421 ESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGP 480 Query: 481 LAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQ 540 LAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQ Sbjct: 481 LAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQ 540 Query: 541 YDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEG 600 YDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEG Sbjct: 541 YDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEG 600 Query: 601 GFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATI 660 GFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATI Sbjct: 601 GFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATI 660 Query: 661 PGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFW 720 PGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFW Sbjct: 661 PGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFW 720 Query: 721 DVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKTKLTDGAEVTLDTL 780 DVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKTKLTDGAEVTLDTL Sbjct: 721 DVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKTKLTDGAEVTLDTL 780 Query: 781 FKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVELTVFDSPRDIPHHRKLTVTFED 840 FKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVELTVFDSPRDIPHHRKLTVTFED Sbjct: 781 FKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVELTVFDSPRDIPHHRKLTVTFED 840 Query: 841 GQVLKIRFDQGMGYWRINFSSQWHYFDFRDDVSFQLVKMAQACKEGNVANSEESWATDVL 900 GQVLKIRFDQGMGYWRINFSSQWHYFDFRDDVSFQLVKMAQACKEGNVANSEESWATDVL Sbjct: 841 GQVLKIRFDQGMGYWRINFSSQWHYFDFRDDVSFQLVKMAQACKEGNVANSEESWATDVL 900 Query: 901 VEVIAS 906 VEVIAS Sbjct: 901 VEVIAS 906 >UniRef50_D0KMA4 DEAD/DEAH box helicase domain protein n=9 Tax=Bacteria RepID=D0KMA4_PECWW Length = 2104 Score = 665 bits (1715), Expect = 0.0, Method: Composition-based stats. Identities = 444/907 (48%), Positives = 574/907 (63%), Gaps = 48/907 (5%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHD 60 +YVNQRQNC CGSPV+E+AFCN+CNEPHLLAR+K+GKLVQWENKGGDEFSLQD++P + + Sbjct: 473 VYVNQRQNCPCGSPVFELAFCNECNEPHLLAREKRGKLVQWENKGGDEFSLQDDIPDDVE 532 Query: 61 ATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCS 120 EKVEKE + P IIAA AGYTLQRLDRQT IGVI+N+SI L INDI+Q+CS Sbjct: 533 PVAEKVEKEIVIKTPHIIAAEHNEAAGYTLQRLDRQTHSIGVIHNNSISLAINDIDQICS 592 Query: 121 ASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRR 180 A C YRG+ G PFRRA+LG PFYVT+IVPTVLEYC DF G +G GP +LPGRGRR Sbjct: 593 ARSCSYRGVKGMSPFRRAILGSPFYVTHIVPTVLEYCPDFLGKNG-KGDGPQTLPGRGRR 651 Query: 181 LITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQ-TSTAPNANADLEKLAAR 239 LITFTDSRQGTARMAVRMQQEAER+RLRGSVVEILSW+Q+ Q A+ D +K Sbjct: 652 LITFTDSRQGTARMAVRMQQEAERNRLRGSVVEILSWYQKQQSAGDVAAADIDPQKFREL 711 Query: 240 AKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKE 299 A +AR++A+EYR GMP +A ++ +A++ EQ + A G K + LVS W EMV EL++ Sbjct: 712 ADKARKEAKEYRDMGMPGEAVEAEEKAQRFEQRLKQALGEKVSVPLVSLGWREMVGELQK 771 Query: 300 RADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQG 359 DI+GP+L+YN Y KPE+F E+ GP+KLSEMLLFREFMRRPKR+NSLETQGLV++GYQG Sbjct: 772 TFDIKGPILRYNRYHKPEIFREHDGPVKLSEMLLFREFMRRPKRSNSLETQGLVKIGYQG 831 Query: 360 LEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVRN 419 LEK P HWQEKGL+L DW+DFLK++LD YVRE+++ QL+D+ + WIGSRF+ + +R+ Sbjct: 832 LEKAQIVPDHWQEKGLSLQDWQDFLKISLDFYVRENSYIQLEDDWRQWIGSRFAPRSLRS 891 Query: 420 PESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTG 479 PES + ++ Q +RWPQIR+G +S RL KLL+LGAG A ID++N WLK AW L+G Sbjct: 892 PESDEHDEYQVKRWPQIRHGIMSQRLIKLLLLGAGLNVKRTADIDVVNNWLKAAWKALSG 951 Query: 480 PLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLA 539 L VL+ DGNRFYLP+EHMTFSL+T A+ICP TNK LDTAFKGLTPYLPTHI FE+L+ A Sbjct: 952 NLGVLRSDGNRFYLPREHMTFSLVTKAYICPATNKFLDTAFKGLTPYLPTHIDFENLSDA 1011 Query: 540 QYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVE 599 Q ++ A+ +PE+W DRSQ DYA G++K R +S DP++ QLR +N+WTDINDR +E Sbjct: 1012 QRLSYSAEPAMLPEVWHFDRSQNDYANGISKVRLQISEDPIVQQLRLQNLWTDINDRAIE 1071 Query: 600 GGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQAT 659 GGFYYRTAEHSAQQS+ERL+ YE MFK G +NVLNCSTTMEMGVD + + + Sbjct: 1072 GGFYYRTAEHSAQQSAERLEEYETMFKEGSINVLNCSTTMEMGVDIGGISAVVMNNVPPH 1131 Query: 660 IPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRF 719 + RS + + + K F Sbjct: 1132 P--ANYLQRAGRAGRSKESRAISYT-------------------LCKGNPHDQQVFSNTL 1170 Query: 720 WDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILR-PLKTKLTDGAEVTLD 778 W MN+ R+ R++ + LL L + + + Sbjct: 1171 WPFET-TIPAPMVAMNSERLVQ-----RHVNS----LLLSEFLCHEIGETEKERTNLNSQ 1220 Query: 779 TLFKDKDRPG-NRPFHDWMSIADFQDFADQWFAAALGRPVELTVFDSPRDIPHHRKLTVT 837 F ++ + F W+ + + A SP ++ + ++ Sbjct: 1221 WFFGEEHKQSICNRFKVWLE----RTISPVDSALKTLVKGTALHGVSPDNLRRNTLKAIS 1276 Query: 838 FEDGQVLKIRFDQGMGYWRINFSSQWHYFDFRDDVSFQLVKMAQACKEGNVANS----EE 893 F + L I D +R + ++ + ++A Sbjct: 1277 FLQQRWLDIYRDL-----SRQEHESQPDTPYRKRLEMEIKRHCGEYLLRDLAARTFLPGY 1331 Query: 894 SWATDVL 900 + TDV+ Sbjct: 1332 GFPTDVV 1338 Score = 232 bits (591), Expect = 4e-59, Method: Composition-based stats. Identities = 129/257 (50%), Positives = 174/257 (67%), Gaps = 2/257 (0%) Query: 647 RVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHK 706 V+TLA+R A IP +WH LVVRS + V+L L + A ERVKDI + Sbjct: 1847 SVITLATRDTLAAIPDSDWHQTQALVVRSQTFALVDLEAVDLACWSEPAGERVKDIPLST 1906 Query: 707 QLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLK 766 +LNGP++QFG+RFW L +EE +L+ N +IT V+YTDRY+QNP AL LLGSI+ LK Sbjct: 1907 ELNGPIAQFGRRFWAELEKANEETGALLKNNQITRVYYTDRYIQNPAALVLLGSIMNQLK 1966 Query: 767 TKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVELTVFDSPR 826 +L+ +V ++TLFK K++PG + HDW + DFQ FA+ WF + +PV++T+ S R Sbjct: 1967 PRLSVHTQVAINTLFKTKEKPGFKAAHDWANKDDFQGFAEHWFTTLMDKPVDVTLNYSKR 2026 Query: 827 DIPHHRKLTVTFEDGQVLKIRFDQGMGYWRINFSSQWHYFDFRDDVSFQLVKMAQACKEG 886 DIPHHRKL V F++G+ LKIRFDQGMGYW I FS ++FRDDV QL MA++ ++ Sbjct: 2027 DIPHHRKLLVEFDNGKALKIRFDQGMGYWSIQFSPDS--YNFRDDVEDQLYNMARSLEQA 2084 Query: 887 NVANSEESWATDVLVEV 903 V+N E+ W TDVLVE+ Sbjct: 2085 WVSNKEDRWPTDVLVEI 2101 >UniRef50_B7VNH2 Putative uncharacterized protein n=1 Tax=Vibrio splendidus LGP32 RepID=B7VNH2_VIBSL Length = 2085 Score = 587 bits (1511), Expect = e-165, Method: Composition-based stats. Identities = 317/806 (39%), Positives = 444/806 (55%), Gaps = 65/806 (8%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHD 60 +Y QRQ CDCG+PV E++FC DCNEPHL+ DKKGKL+QW GDEFSLQ E + Sbjct: 477 VYAVQRQTCDCGAPVLELSFCLDCNEPHLMGLDKKGKLLQWNGGAGDEFSLQQERLDD-- 534 Query: 61 ATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCS 120 ++ + +++ + P + A + Y + + IG + ++ +Q + Sbjct: 535 DDQDVQQLDDTARYPEMFGAKQDDHEHYAAINI-GKDGIIGSVKPGYELMMDTAKKQ--T 591 Query: 121 ASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRR 180 C + G + PFRRA+LG PFY+ N+VPT+LE+C D +D GP SLP RGRR Sbjct: 592 CCSCNFEGYNHGSPFRRAMLGAPFYIANVVPTLLEFCPDIVADGP---EGPQSLPARGRR 648 Query: 181 LITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQ--RTQTSTAPNANADLEKLAA 238 LITFTDSRQGTAR++VRMQQEAERS+LRG+VVE+L Q + Q P+ + L A Sbjct: 649 LITFTDSRQGTARLSVRMQQEAERSKLRGAVVEVLRDKQLSQPQNDDKPSEGVSAQDLLA 708 Query: 239 RAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELK 298 +AK+ R+ GM A++ +AQA +E G A L +W +MV EL Sbjct: 709 KAKE-------LRAMGMNGPAEMLEAQASAIES-------GGAELTLAKLSWNDMVTELA 754 Query: 299 ERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQ 358 +++D+ G +LQYN YL PE+F + G KL++MLLFREF RRPKR NS ETQG+V+V Y Sbjct: 755 KKSDLNGAMLQYNQYLSPEIFKQFDGSAKLADMLLFREFARRPKRQNSSETQGMVKVSYA 814 Query: 359 GLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDE-LKNWIGSRFSSKFV 417 GL+KI P W+E G LDDW DF+KV+LD Y+RE+NF +L+D W+GSRF+SK + Sbjct: 815 GLDKIKSCPDRWEEYGYKLDDWLDFIKVSLDFYIRENNFLRLEDAGWLKWVGSRFASKSL 874 Query: 418 RNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQL 477 RNP+S++ + + ++WPQIR+GN +RL KLL + + DIIN WL AW +L Sbjct: 875 RNPDSEEANEGRVKKWPQIRSGN-HNRLVKLLAATSSIDADSTVGNDIINGWLASAWHEL 933 Query: 478 TGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLT 537 T +L PD NRF L + +TFS + IC VTNK++DT F+G++PYLP + Sbjct: 934 TVNTRILSPDNNRFALDRNKITFSFVDKVHICKVTNKLIDTTFRGISPYLPRKVE----- 988 Query: 538 LAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRV 597 + +V P IW+++ +Q DY +GL R+ V D + LR N+WTDINDR Sbjct: 989 --DISQYKCVEVDFPCIWQVEATQHDYQKGLKHIREIVGKDSKVEYLREHNLWTDINDRA 1046 Query: 598 VEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQ 657 VEGG YYRTAEHSAQQSS+RL YE +FK G++NVLNCSTTMEMGVD + + + Sbjct: 1047 VEGGLYYRTAEHSAQQSSDRLNEYEDLFKKGKINVLNCSTTMEMGVDIGGISAVVMNNVP 1106 Query: 658 ATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQ 717 + RS + + + K F Q Sbjct: 1107 PHP--ANYLQRAGRAGRSKESRAISYT-------------------LCKGNPHDQQVFQQ 1145 Query: 718 RFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRP-LKTKLTDGAEVT 776 W + + + R +Q V LL L+ + + + + Sbjct: 1146 PKWPFVTKIPAPYIAFN----------SQRLIQRHVNSLLLSIFLKTQIGSTNKEKTSLN 1195 Query: 777 LDTLFKDKDRPGNRPFHDWMSIADFQ 802 L+ + + F +W+ Sbjct: 1196 LEWFYLPEGNAVCDSFLNWLESDARD 1221 Score = 219 bits (556), Expect = 5e-55, Method: Composition-based stats. Identities = 73/259 (28%), Positives = 130/259 (50%), Gaps = 4/259 (1%) Query: 648 VMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQ 707 V T+A+ Q TIPG W + + + + F+L ++ I++ + Sbjct: 1826 VSTIANTVAQNTIPGKLWLQQGGISICCESTQLHPQSPFVLSISKKGEAPQIASIELVDE 1885 Query: 708 LNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKT 767 LNG LS+FG+ FW +F + L+ + I+ V Y+DRY+Q+P ++ ++ +L + Sbjct: 1886 LNGSLSKFGKAFWITMFKTNPNLAELLKSESISEVEYSDRYIQSPSSMLMICELLGYICR 1945 Query: 768 KLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVELTVFDSPRD 827 VT++TL+ +K G+ HDW +F + + W LG + + Sbjct: 1946 GFDSIRTVTINTLYHEKQTVGHYLHHDWQDKGEFIEAYEVWGELKLGVKPSVKCHEKRSS 2005 Query: 828 IPHHRKLTVTFEDGQVLKIRFDQGMGYWRINFSSQW---HYFDFRDDVSFQLVKMAQACK 884 I H R LT+ E G+ L +FDQG+GYWRI+ ++ + F D+ QL + ++ + Sbjct: 2006 IAHRRLLTLKLESGRELVFKFDQGVGYWRISDTTSRFDKVKYSFHSDLDPQLRDL-RSKE 2064 Query: 885 EGNVANSEESWATDVLVEV 903 V ++ ESW+TDV +++ Sbjct: 2065 PNLVVSNSESWSTDVTLQI 2083 >UniRef50_B5WD63 DEAD/DEAH box helicase domain protein n=1 Tax=Burkholderia sp. H160 RepID=B5WD63_9BURK Length = 2083 Score = 577 bits (1487), Expect = e-163, Method: Composition-based stats. Identities = 301/813 (37%), Positives = 409/813 (50%), Gaps = 71/813 (8%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHD 60 +YV QR C+C +PVYE+AFC++C PHLLA D+ G+L Q DEFSL + P E + Sbjct: 469 VYVTQRSRCECHAPVYELAFCDECKTPHLLAEDRAGQLQQRSPYASDEFSLSYDSPAEDE 528 Query: 61 ATEE--KVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQV 118 + F +IAA ET Y +++ T +G + + ++ E + Sbjct: 529 PNGDLPSSLSRRQFAEKFVIAASETQREPYFPLQVNLSTLNVGALPSTDTRELVVAPESL 588 Query: 119 CSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRG 178 + S C P R+A LG PFYV N VPTVLE+C D E +G P+ LPGRG Sbjct: 589 ATCSRCETSFTGSPGPLRKAYLGAPFYVANAVPTVLEFCPDP-MPEDSDGKSPEELPGRG 647 Query: 179 RRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAA 238 R+LITFTDSRQGTARMAVRMQQEAERSRLRG V EIL Q + + Sbjct: 648 RKLITFTDSRQGTARMAVRMQQEAERSRLRGLVFEILRNAQAKLDAKPKDIPTV------ 701 Query: 239 RAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELK 298 ++ EQA+ +S GM D + QL Q + A G + + +W++MV EL Sbjct: 702 GYEELIEQAKRLQSMGMNDMS-------AQLFQKAEEARSGLSTSGTSEMSWSDMVTELA 754 Query: 299 ERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQ 358 DI + YN Y PE+F G + ++ +LL RE+ RRPK NS ET GLV+VGY+ Sbjct: 755 TSRDISLSIRDYNKYANPELFEGQEGAIPMARLLLAREYARRPKNQNSTETLGLVRVGYR 814 Query: 359 GLEKIHKSPLHWQEK------------GLTLDDWRDFLKVTLDHYVRESNFTQLDDELKN 406 GL+ I +P W + LTL DWRDFLKV LD +VRE+ F +LD ++ Sbjct: 815 GLDGITSAPALWLGRKAGALPGEAVPGNLTLQDWRDFLKVALDFHVRENTFIRLDPTMQR 874 Query: 407 WIGSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDII 466 W+G+RF+SK + + E ++WPQ R G HRL KLL G DII Sbjct: 875 WMGARFTSKVLMPSKRDAAESATFKKWPQFRQG-RGHRLVKLLEQGCNLDRSRPDDQDII 933 Query: 467 NTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPY 526 N L+ AW L G +L+ + L +TFSL T AW+CP+T+++ DTAF+ LTPY Sbjct: 934 NHLLEHAWNALVGAT-ILEQFEGGYALNLNTLTFSLPTIAWVCPLTHRMFDTAFRALTPY 992 Query: 527 LPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRS 586 +P + +KV +P + L D + R V+ +P + QLRS Sbjct: 993 MPDRFR--------EGDYRCRKVQLPT-FSLLSPAGDADAARVQVRRLVTDNPQVQQLRS 1043 Query: 587 ENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTD 646 +N+WTDI DR EGGFYYRTAEHSAQQSS RL++YE MFK G++NVLNCSTTMEMGVD Sbjct: 1044 QNLWTDICDRTAEGGFYYRTAEHSAQQSSSRLETYEDMFKRGKINVLNCSTTMEMGVDIG 1103 Query: 647 RVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHK 706 + + + + R +++ A K Sbjct: 1104 GISAVLMNNVPPHP--ANYLQRAGRAGRRNEARSIAYTLCKADPHNQRAFREPK------ 1155 Query: 707 QLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLK 766 W + +++ RI R++ + ALLG LR L Sbjct: 1156 -------------WPFVT-AIPAPGITLSSERIVQ-----RHVNS----ALLGRFLRTLG 1192 Query: 767 TKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIA 799 TD ++TL+ F + F DWM Sbjct: 1193 NTGTDRTKLTLNWFFG-GEASTCTRFIDWMQSD 1224 Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 63/248 (25%), Positives = 107/248 (43%), Gaps = 7/248 (2%) Query: 660 IPGPEWHLNDELVVRSLGYKTVELNE-FILPAKATNAVERVKDIQIHKQLNGPLSQFGQR 718 +PG W + V + L I A +++ +LNGP+S R Sbjct: 1840 VPGENWLRTHDTSVWVSTGQLKSLRVTPIDVAAWEARESGATVLEVVTELNGPVSSLAAR 1899 Query: 719 FWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKTKLTDGAEVTLD 778 ++ SLM + T V Y+DRYL++P +L LLG L K ++ + + Sbjct: 1900 LRGLISERVPALASLMAHDHATEVSYSDRYLKSPWSLMLLGGFLSIFK--SSELRRLEIA 1957 Query: 779 TLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVELTVFDSPRDIPHHRKLTVTF 838 TL + N HDW D + W + ++T+ + P D+ H R + V++ Sbjct: 1958 TLRPQATQVSNHLKHDWNRPEDMRKLICAWLQTMVSVEPQVTMVEKPYDLQHSRVIYVSW 2017 Query: 839 EDGQVLKIRFDQGMGYWRI-NFSSQWHYFDFRDDVSFQLVKMAQACKEGNVANSEESWAT 897 G+ K+ DQG+GYW+ +FDF + + Q +M + K N+ N +W T Sbjct: 2018 ASGRKTKLILDQGVGYWQPKTVYRDQAHFDFNESLEAQGSRMVEQYKFANMVN-GGTWPT 2076 Query: 898 DVLVEVIA 905 + V++ Sbjct: 2077 --FLSVVS 2082 >UniRef50_A1K7X0 Putative helicase related protein n=3 Tax=Proteobacteria RepID=A1K7X0_AZOSB Length = 2109 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 253/817 (30%), Positives = 376/817 (46%), Gaps = 88/817 (10%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLL------ARDKKGKLVQWENKGGDEFSLQDE 54 +Y R++C+CGSPVYE+ CN+CN +L D K +L+Q + DEFSL E Sbjct: 473 VYTEPRKHCECGSPVYELRSCNECNTTYLWARRYGPGEDGKYRLLQTTEEDFDEFSLDTE 532 Query: 55 VPVEHDATEEKVEKENSFQPPLIIAAGETSEAGYT---------LQRLDRQTRRIGVINN 105 E E++ + + P LI A + + LD R G + Sbjct: 533 RAEED---EQQAQVRPGYSPVLIANAHKGATEEILVDAATLALDPLELDGAVRLRG--RD 587 Query: 106 DSIPLIINDIEQVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEG 165 +S+ + VC G + +G FR+A+LG PF + IVPT+LE+C D + E Sbjct: 588 ESVIDDQGTLAMVCPECG-AHDPSNGLGLFRKAILGAPFLLGEIVPTLLEFCPDIDNSE- 645 Query: 166 KEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTST 225 P P RGRR+I+FTDSRQGTAR+A R+QQ++ER+R+RG V + TS Sbjct: 646 ---AKPLERPYRGRRMISFTDSRQGTARIAARLQQDSERNRIRGLVFTKVL------TSG 696 Query: 226 APNANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATIL 285 +P AD+ +L + + P + + +L + Sbjct: 697 SPGGEADVAQLQGQVEALGA---VLAGGPNPQIQVIYDSLRAKLLEFSGF---------- 743 Query: 286 VSRTWTEMVNELKE-RADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRT 344 + EMV L +D+R + Y P F N G +L+ +LL REF RRPKR Sbjct: 744 RPVPFAEMVQWLSSAVSDVRDWMYGYYRDQDPGEFGTNNGRERLARILLTREFGRRPKRV 803 Query: 345 NSLETQGLVQVGYQGLEKIHKSPLHWQE-KGLTLDDWRDFLKVTLDHYVRESNFTQLDDE 403 NSLET GLV+ Y LE I++ P E ++L DW+DFLK+ LD ++RE+ F L D Sbjct: 804 NSLETMGLVRTVYPKLEAINRLPDFVGEVPAISLSDWKDFLKIALDFHIRENTFIDLPDA 863 Query: 404 LKNWIGSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATI 463 + W G+R S+K + PE++ + N+ +RWPQ RL ++L G +A+ Sbjct: 864 WRKWGGNRLSAKQLMPPETQQAQTNRYKRWPQCAVIERQSRLVRILARGLNIDPQSASGR 923 Query: 464 DIINTWLKEAWAQLTGPLAVLKPDGNRFYLP---KEHMTFSLITDAWICPVTNKILDTAF 520 + I+ L+ AW QL L +L+ YL E M + I +AW+CPVT ++LDTAF Sbjct: 924 NAIDAILRGAWKQLLD-LKLLEMGDVGRYLKLDGAEIMALAPIENAWLCPVTRRVLDTAF 982 Query: 521 KGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPL 580 G+TPYLP + + + MP+ + E E + RDW++ D Sbjct: 983 MGITPYLPEQAKSDSV-------AKCVPLKMPDYSPIANLDEIGDERVELVRDWLNTDDA 1035 Query: 581 IAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTME 640 + LR + +W+D+NDRVVEG FY+R AEHSAQQ RL YE FK G++N+L+CSTTME Sbjct: 1036 VTALRKDGLWSDLNDRVVEGAFYFRAAEHSAQQPGARLAEYEAAFKTGRINLLSCSTTME 1095 Query: 641 MGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVK 700 MGVD + +A + + R ++V Sbjct: 1096 MGVDIGGISVVAMNNVPPHP--ANYLQRAGRAGRRSETRSV------------------- 1134 Query: 701 DIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGS 760 + + K F W L + R+L + LL + Sbjct: 1135 ALSLCKSNPHDQQVFTNPMWPFETVLPAPRVQL------SSAILVQRHLNS----MLLAN 1184 Query: 761 ILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMS 797 LR + ++ L+ D+ + F W Sbjct: 1185 FLRKELSGPGSAEKLNLEWWMLPADQSRQQRFCAWTQ 1221 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 61/261 (23%), Positives = 100/261 (38%), Gaps = 27/261 (10%) Query: 658 ATIPGPEWHL-NDELVVRSLGYKTVEL-----NEFILPAKATNAVERVKDIQIHKQLNGP 711 +PG W + ++VR K V L P R I+I +L+G Sbjct: 1856 RAVPGANWGDCDGTILVRGAVIKPVALGERLEFALSAPEGLPAQTVR---IEISNELDGM 1912 Query: 712 LSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKTKLTD 771 FG+R + F H ++ RI + Y DRYL P+ +ALL + L+ + Sbjct: 1913 ADGFGRRMLES-FQGHLGISLVLPGERIVELTYHDRYLNAPLPVALLLEFVCALRASADE 1971 Query: 772 G---AEVTLDTLFKDKDRPGNRP----FHDWMSIADFQDFADQWFAAALGRPVELTVFDS 824 +V L +P P + +W S + F A G + L + Sbjct: 1972 SWDVKQVALSVAPVPDAQPSRMPPSKVWQNWSSDEERDKALVAAFEYA-GLDLSLATL-T 2029 Query: 825 PRDIPHHRKLTVTFEDGQVLKIRFDQGMGYWRI----NFSSQWHYFDFRDDVSFQLVKMA 880 RD H R+L + F G+ L++ FDQG YW++ + +F F D+ Q + Sbjct: 2030 KRDSIHARRLDIVFASGKKLQVWFDQGFSYWQVPRDRTIGTGRVWFPFAGDLERQAESIG 2089 Query: 881 QACKEGNVANSEESWATDVLV 901 + + + T V + Sbjct: 2090 R----AEFRIEGQPYPTYVFL 2106 >UniRef50_A6BZ17 Putative uncharacterized protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6BZ17_9PLAN Length = 2084 Score = 508 bits (1308), Expect = e-142, Method: Composition-based stats. Identities = 206/867 (23%), Positives = 345/867 (39%), Gaps = 88/867 (10%) Query: 1 MYVNQRQNC-DCGSPVYEVAFCNDCNEPHLLARDKKGKLVQWEN------KGGDEFSLQD 53 +Y + R+ C C S V++V CNDC E +L A + + E L D Sbjct: 462 VYFDHRKVCQHCNSLVFDVLLCNDCGEVYLGAHEGDENQLFANPWNDETESDDFEIELND 521 Query: 54 EVPVEHDATEEK--VEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLI 111 E +E +A E ++ + ++ D QT ++ + + + Sbjct: 522 EPSLEDEAQELDAVSVSPAGSTAKQLLCSRAPNDLMTGPVPYDTQTGKLADDDARTASFL 581 Query: 112 INDIEQV---CSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEG 168 E CG R Q F LGGPFY+ +P +L + K+ Sbjct: 582 FALPEPDTGSLRCVACGGRDSDRWQQFSTIRLGGPFYLGVSIPILLSHAPVHQDQTKKK- 640 Query: 169 VGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPN 228 P GR++I+FTDSRQGTAR AVRMQ+E+E + +R + L ++ S Sbjct: 641 ------PFEGRQMISFTDSRQGTARFAVRMQRESEINYVRSFIYHKLWSLAKSVDS---A 691 Query: 229 ANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSR 288 LE A ++ P+ +L Q + ++L Q T + Sbjct: 692 ELIRLEGTVASLEKVAS--------TSPELQQLYQEKLQKLNQLKSQ-----QDTPQATI 738 Query: 289 TWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLE 348 W+++ + L + + + + +E L+EM LFREF+ RP+R NSLE Sbjct: 739 AWSDLSSALAKEPAVEFFIRESTRQRYLSAIHEPNE---LAEMFLFREFLSRPRRKNSLE 795 Query: 349 TQGLVQVGYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWI 408 T GL + + +E P W + +W FLK+ +D+ VR + +++ + WI Sbjct: 796 TLGLASIWFPAIEA-CDPPEEWLSRRRGKSEWCVFLKLCVDYLVRTNYCSEIRRDYLRWI 854 Query: 409 GSRFSSKFVRNPESKDPEDNQNRRWPQIR-NGNVSHRLAKLLMLGAGFKTVNAATIDIIN 467 G RF + + P+ +D RWP +R N + R+ LL L G N +I+ Sbjct: 855 GVRFRQRELVPPD-QDIISRLQVRWPSVRRNRGRASRIMMLLQLVLGLNLENDHDKTLID 913 Query: 468 TWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYL 527 L+ AW QLT + + L + T ++CPVT + LD G++PY Sbjct: 914 VILRAAWRQLTMS-DIFNQTTEGYQLNFNKSEIRIATSGYLCPVTRRFLDACIGGISPY- 971 Query: 528 PTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSE 587 + +LA + +A +V MP + ++ + + DW++ D + R+ Sbjct: 972 -----HDRRSLATFG--LAAEVVMPTLPFPFSRKDGHTVSPDEVSDWLATDSVTQAARNA 1024 Query: 588 NVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDR 647 VW+ NDR+V Y+ TAEHS Q S RLQ EK F+ G N+L+CSTTMEMG+D Sbjct: 1025 GVWSQFNDRIVFLSPYFETAEHSGQLSKSRLQFLEKRFRKGMTNLLSCSTTMEMGIDIGG 1084 Query: 648 VMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQ 707 + ++A + W R + R + + ++ Sbjct: 1085 LTSVAMNNAPPGP--ANWLQRAGRAGR-------------------RGITRASTLTLCRE 1123 Query: 708 LNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKT 767 L + F W H SL +DR +Q + LLGS + Sbjct: 1124 LPHGQAVFRNPLWPFTTPIHVPTVSLN----------SDRIVQRHINALLLGSFIA---A 1170 Query: 768 KLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVE--LTVFDSP 825 + + ++ F + +R + + + +Q L Sbjct: 1171 ESDNATKLECKWFFLPEQELPSRCHRFASWLEETAESCEQIVRGIERLQARTLLQSDSVR 1230 Query: 826 RDIPHHRKL--TVTFEDGQVLKIRFDQ 850 R + H ++ ++ Q + ++Q Sbjct: 1231 RILDHSSRMIQEISTRWSQQRESLWEQ 1257 Score = 125 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 44/194 (22%), Positives = 74/194 (38%), Gaps = 9/194 (4%) Query: 707 QLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLK 766 +LNG + G FW + MN+ V Y+DRYL +P+A+ LL +L+ L Sbjct: 1895 ELNGEVENLGVAFWGQIQKVAPWITEAMNDGPPLTVEYSDRYLVSPLAVRLLYEVLKELL 1954 Query: 767 TKLTDGAEVTLDTLFKDKDRP-GNRPFHDWMSIADFQDFADQWFAAALGRPVELTVFDSP 825 +++++ T+ D G H+W + + F V L Sbjct: 1955 AGSHGSSKLSIQTMKVDNHPVTGRCLHHNWQNERAQESTLKHVFNHVAKSSVRLL---RK 2011 Query: 826 RDIPHHRKLTVTFEDGQVLKIRFDQGMGYWRINFSSQWHYFDFRDDVSFQLVKMAQACKE 885 + H R + + + ++ I DQGMG+ S F F D Q + ++ Sbjct: 2012 NKLAHARTMRIKWPGDRLAVITLDQGMGF---AESESQIPFSFHDSPEKQANSI--ISRQ 2066 Query: 886 GNVANSEESWATDV 899 NV + V Sbjct: 2067 FNVRQYDHEVPIYV 2080 >UniRef50_Q5WTN0 Putative uncharacterized protein n=1 Tax=Legionella pneumophila str. Lens RepID=Q5WTN0_LEGPL Length = 2106 Score = 491 bits (1263), Expect = e-137, Method: Composition-based stats. Identities = 228/815 (27%), Positives = 362/815 (44%), Gaps = 90/815 (11%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLARDKKGKLVQWEN-KGGDEFSLQ---DEVP 56 +Y R++C CGSP+YE+ C+DC PHL+A + +LV N K DEF L +E Sbjct: 481 IYFEMRKHCRCGSPIYELVACDDCGTPHLIAAQRGDQLVPPINIKVIDEFELDIDANEEE 540 Query: 57 VEHDATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIE 116 + D T ++ N + ++I + G + +D+QTR++ + + L + + Sbjct: 541 LNQDDTNVVNDRYNDAESSVLIVNRNIN--GVIEEVIDKQTRQLIEPTSGNEHLRLRVLG 598 Query: 117 Q-----VCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGP 171 +C G G ++ F+ A +G PF + I+P++LE+ D G P Sbjct: 599 DSGSGLICPCCQGGSHGNRHRKLFQEARIGAPFSLGIILPSLLEFAPD--------GDDP 650 Query: 172 DSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANA 231 P RGRRL+TF DSRQGTAR+A ++QQE+ER R+RG V + Q+ Sbjct: 651 AEHPYRGRRLLTFNDSRQGTARIAAKLQQESERDRIRGLVYHLALRDGLMQSDFEAKQLK 710 Query: 232 DLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWT 291 D + ++ ++ + + + + + Q A+ K I ++ Sbjct: 711 DEIQELENIREHVKEEGK------------THIENLLVNRKKQLASLSKPKPI----SFE 754 Query: 292 EMVNEL-KERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQ 350 EM +L + +D + Y + + E F G L L+ M L REF RRPKR N+LE+ Sbjct: 755 EMSQKLTNQSSDFERMLSHYRNDISYENFKGPEGSLSLARMFLIREFGRRPKRLNNLESM 814 Query: 351 GLVQVGYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGS 410 GLV V Y L I ++ +G L DW FLK+ LD +VR ++ +++K+W+G Sbjct: 815 GLVSVQYPALNNITRA-----HEGFNLIDWISFLKIALDFFVRAGGSLEIPEKIKSWLGM 869 Query: 411 RFSSKFVRNPESKDPEDNQNRRWPQI--------RNGNVSHRLAKLLMLGAGFKTVNAAT 462 F + + + D E RRWP+ + N L ++L + Sbjct: 870 PFPQTRLVDQDRVDKEKTD-RRWPRAYYTLPNGNKRLNYQSTLVRILACALKVDIETSLG 928 Query: 463 IDIINTWLKEAWAQLTGPLAVL-KPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFK 521 D ++ L AW LT +L G R LP + F+ IT+AWICP+T + LDT + Sbjct: 929 ADKVDAALTSAWRALTEGSGILYSNSGGRRVLPLSQIAFTPITNAWICPLTRRFLDTTIQ 988 Query: 522 GLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLI 581 +TPYLP H + E T QK+ +P + + +ARDW+S I Sbjct: 989 DITPYLPLHYTNE--------TVKCQKIEIPLYDQPFGGDASDLAQVIRARDWLSKQESI 1040 Query: 582 AQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEM 641 Q + E +W +NDR +E Y+ TAEHSAQQ + RL YEK FK+G LN+L+CSTTMEM Sbjct: 1041 IQFKEEGLWPVLNDRAIELSPYFVTAEHSAQQPAYRLDRYEKAFKSGDLNLLSCSTTMEM 1100 Query: 642 GVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKD 701 G+D + T+A + + R +++ Sbjct: 1101 GIDIGGIATVAMNNVPPHP--ANYLQRAGRAGRRQEARSI-------------------S 1139 Query: 702 IQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSI 761 + + K F + W + A SL + I R++ + + Sbjct: 1140 LTLCKSNPHDQLVFSKTDWPFVTALPAPAVSLNSELII------QRHVNSLILKHFFS-- 1191 Query: 762 LRPLKTKLTDGAEVTLDTLFK-DKDRPGNRPFHDW 795 + D ++T F + + F W Sbjct: 1192 -TQITGSEQDVLKLTCGWFFISEDNNSFAERFIAW 1225 Score = 158 bits (399), Expect = 8e-37, Method: Composition-based stats. Identities = 60/211 (28%), Positives = 102/211 (48%), Gaps = 15/211 (7%) Query: 702 IQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNT--RITGVHYTDRYLQNPVALALLG 759 I+I K L+G L FGQRFW ++ + SL +NT I + Y DRYL +P+ +ALL Sbjct: 1899 IEILKDLDGSLQGFGQRFWKLVSSSSPNVASLFSNTSLDIEAISYHDRYLFSPLPVALLL 1958 Query: 760 SILRPLKTKLTDGA------EVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAAL 813 ++ ++T + E+T + + ++ + +W+ + L Sbjct: 1959 ELITGIRTLVGTSRWNNPFIEITTNNESANLNKRSCFIWDNWLDLEARNGAI-INSLDYL 2017 Query: 814 GRPVELTVFDSPRDIPHHRKLTVTFEDGQVLKIRFDQGMGYWRINFSSQWHYFDFRD-DV 872 G ++ + D + + H R L V F VL +R DQG+ YW+ N S+ F+F D D+ Sbjct: 2018 GIEGKIKLLDKNKSL-HGRMLEVKFSSNYVLTVRLDQGVSYWKANNYSKQKIFNFGDPDL 2076 Query: 873 SFQLVKMAQACKEGNVANSEESWATDVLVEV 903 S Q +++A+ NV + T V ++V Sbjct: 2077 SNQGIQLAEL----NVDIESNYFPTHVFIKV 2103 >UniRef50_B1ITS0 Helicase superfamily 1 and 2 ATP-binding n=14 Tax=Escherichia coli RepID=B1ITS0_ECOLC Length = 2104 Score = 468 bits (1202), Expect = e-130, Method: Composition-based stats. Identities = 201/834 (24%), Positives = 345/834 (41%), Gaps = 95/834 (11%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLARD----KKGKLV--QWENKGGDEFSLQDE 54 ++ QRQ CDCG+PV+EV C+ C +L A++ + Q DEF+L + Sbjct: 459 VWFEQRQYCDCGAPVFEVLRCSGCGSAYLSAKEEMRGDGTNWLVAQPAAAEVDEFALDVD 518 Query: 55 VPVEHDATEEKVEKENSFQPPLIIAAGET---SEAGYTLQRLDRQTRR---IGVINNDSI 108 V E + ++++ + F LI + GE S T ++D + ++ I ++ +S Sbjct: 519 VYSEDE-DNDELDNNSQFDR-LIASDGEKYIISLEETTAGKIDSEAQKHYEINLLRPESR 576 Query: 109 PLIINDIEQVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEG 168 N+ + CG FR LG PF++ I+PT+LE+ + E + G Sbjct: 577 GEGRNNS---FACVCCGDSQRKNNPLFRPLRLGAPFFLNEIIPTLLEFSPLPQTREEQLG 633 Query: 169 VGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPN 228 P GRRL+TFTDSRQGTAR++ R+QQ+A+++ LR + L+ +P Sbjct: 634 ------PFNGRRLLTFTDSRQGTARISARLQQDADKATLRALCYQELANINEPSAKLSPA 687 Query: 229 ANADLEKLAAR------------AKQAREQAEEYRSWGMPDQAKLSQAQAEQ---LEQAY 273 A LE A+ K+A EE + + + +A Sbjct: 688 HCALLESFIAQFSILPLKNSIDALKKAMVANEELSPADIQALKIIEPMVSSLSPDHAEAM 747 Query: 274 QAATGGKAATILVSRTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLL 333 Q + +W + +L D+ + E+ + + ++ L Sbjct: 748 QILQANSGNQQKKTMSWQTLSEQLVGSVDLADRMRGSFK----ELSGLDLTKQQFADFCL 803 Query: 334 FREFMRRPKRTNSLETQGLVQVGYQGLEKIHKSPLHWQ----EKGLTLDDWRDFLKVTLD 389 + EF RRPK +LE+ GLV + Y ++K+ P W+ + L +WR+ LK+TLD Sbjct: 804 YSEFGRRPKNAWTLESLGLVAIHYPFIDKVTTCPQDWKTLLPDPDKQLAEWRNLLKITLD 863 Query: 390 HYVRESNFTQLDDE-LKNWIGSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKL 448 ++RE++ ++E W+G+RF K ++ P+ K+ +++ WPQIR+ + + + L Sbjct: 864 FFIRENSAVFYENEQYPRWMGARFPVKMLQGPDKKNKGQKRDQLWPQIRDRHYNRVIKLL 923 Query: 449 LMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLP-KEHMTFSLITDAW 507 + + + A ++N + E W + L + + L K+ F W Sbjct: 924 IAVFPAIQPEQAHWKSLVNHLMIEVWDAIRPCLRQFES---GYQLDIKQQAEFYSPKQVW 980 Query: 508 ICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWK-LDRSQEDYAE 566 CP T + LD G +PYLP A + MPE+ R Sbjct: 981 RCPYTRRALDVTLLGYSPYLPGSKEIAP--------EKAVLIEMPELPVRHWRLSGGGEI 1032 Query: 567 GLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFK 626 + +W+ + LI R E +W+ +DR+ +YR EHSAQ++ E+ Q EK FK Sbjct: 1033 AREERLEWLESNALIQHAREEGLWSTRSDRLALKDSWYRLEEHSAQRTPEQNQFNEKQFK 1092 Query: 627 NGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEF 686 +G++NVLNCSTTMEMGVD + +A + + R + Sbjct: 1093 SGKVNVLNCSTTMEMGVDIGGMSLVAMNNVPPAP--ANYLQRAGRAGRRGESASA----- 1145 Query: 687 ILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTD 746 I + K + F W ++ Sbjct: 1146 --------------AITLCKNTAHGMEVFKDPLWAFNTTASAPRVRFGSS------SIVQ 1185 Query: 747 RYLQNPVALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIAD 800 R++ + L L L+ ++ D +++ F + D F W++ Sbjct: 1186 RHVNA-LVLGLF------LRAEVPDATKLSCKWFF-EGDESQCLRFLHWLNNQA 1231 Score = 152 bits (382), Expect = 8e-35, Method: Composition-based stats. Identities = 63/252 (25%), Positives = 102/252 (40%), Gaps = 17/252 (6%) Query: 661 PGPEWHLNDE---LVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQ 717 PG W + + ++ KT I + +QL+GPL FG Sbjct: 1858 PGELWGQSASSPVVTLKGTSGKTFSGQTLSAEDLLPALPTGAVRINLCEQLDGPLEGFGS 1917 Query: 718 RFWDVLFNDH-EEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPL-KTKLTDGAEV 775 RFW ++ H Q+ + IT V Y+DRYL +P +LG IL L + + + A + Sbjct: 1918 RFWSLVTQQHAGWKQAFTRHKEITHVEYSDRYLNSPFTARMLGEILTELVEQGMAERASL 1977 Query: 776 TLDTLFKDKD-RPGNRPFHDWMSIADFQDF-----ADQWFAAALGRPVELTVFDSPRDIP 829 T+ D + R N ++ W++ D Q + + A + D+ + Sbjct: 1978 TVCVKKLDYNSRQHNALYNAWLNEEDRQQVVTTLLEEGYLGPAWPGAISWLTGDN-QSTE 2036 Query: 830 HHRKLTVTFEDGQVLKIRFDQGMGYWRINFSSQWHYFDFRDDVSFQLVKMAQACKEGNVA 889 H R+LTVTF DG + D G+ YWR + +FDF V Q+ ++A Sbjct: 2037 HGRELTVTFSDGSQHYVLLDMGLSYWRCIEDT---FFDFALRVPQQVERLA--NTRARAV 2091 Query: 890 NSEESWATDVLV 901 + V+ Sbjct: 2092 APGNDLRSYVIA 2103 >UniRef50_B3Q0I0 Hypothetical conserved protein n=2 Tax=Rhizobium etli RepID=B3Q0I0_RHIE6 Length = 2041 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 178/728 (24%), Positives = 289/728 (39%), Gaps = 53/728 (7%) Query: 1 MYVNQRQNCD-CGSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGG--DEFSLQDEVPV 57 +Y+++ C C +PV E+ C++C E L A + ++ + DEF + Sbjct: 453 VYLDRCDLCPTCSAPVLEIVSCSECGEVLLEAVELPNDRIRGTRRDLGKDEFEAEATRED 512 Query: 58 EHDATEEKVEK---ENSFQPPLI---IAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLI 111 + + E E L+ I G + + L R +I + + + Sbjct: 513 DGTGDDADDEADDTEQEMVGDLVGTEILIGAAAGPDFRPLHLSRTDWKIEAVASPGSASV 572 Query: 112 INDIEQVCSASGCGYRGMSGKQPF-RRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVG 170 + ++Q S C +G R G PF + + P +LE V Sbjct: 573 YSALKQD-SCPCCQTVATNGVDKLLRPVRFGAPFMIASAAPILLEGV--------DPEVD 623 Query: 171 PDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNAN 230 P +GRR+++FTDSRQGTARM+ ++Q EAER+ +R V + Sbjct: 624 RGVSPAQGRRVLSFTDSRQGTARMSAKIQAEAERNFVRSFVYHTVQ-------------- 669 Query: 231 ADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTW 290 L + E+ + P A + L + A + L W Sbjct: 670 ---HSLQIGTAVDASEIEKTIASLEPVVAATRDPALQNLLDQQRKALADASKPSLEGVAW 726 Query: 291 TEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQ 350 +MV L +R ++ V + PE+F KL++ LL REF RRP+ SLE+ Sbjct: 727 DDMVARLSQRKEVGQWVKEVWEPRDPELF---NDSRKLADFLLLREFARRPRTALSLESL 783 Query: 351 GLVQVGYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGS 410 GL ++ + ++ P + G ++DWR FL ++R ++ +D + +WI Sbjct: 784 GLARLRFAAIDNQTVVPPAFARHGKGIEDWRAFLYAITAFFLRGNSAVAIDPAVMHWITP 843 Query: 411 RFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWL 470 + ++ +R P + + WP + LLM G G Sbjct: 844 KAKTRALRAPGRTTDGERRFLGWPGVPRKGNPSTPQLLLMNGLGLDRSRPDHRADFEEIF 903 Query: 471 KEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTH 530 +AW QL AV D +R L + + D + C +T +I+D A G +P + Sbjct: 904 DKAWHQLQ---AVFNSDPDRPALDLRKAHIAPLPDGYYCALTRRIVDIAPLGSSPLVRAS 960 Query: 531 ISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVW 590 VA+ MP + + D+ EG K R+W+ + LR + W Sbjct: 961 RHSAR--------RVAEPRKMPSLPAVLLGDVDFDEGRRKIREWLDGSDDVTALREDGAW 1012 Query: 591 TDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMT 650 +I+DRV Y R+AEHSAQQ + LQ YE FK G++N+LNCSTTMEMGVD V T Sbjct: 1013 NNISDRVALFADYSRSAEHSAQQDASVLQHYEAQFKAGKINILNCSTTMEMGVDIGSVST 1072 Query: 651 LASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNG 710 + + +I + R ++ A + + + L Sbjct: 1073 VLMTNVPPSI--ANYKQRVGRAGRRRQPFSLAFTFCRDRPLDREAFNSPER-YLGRTLAA 1129 Query: 711 PLSQFGQR 718 P R Sbjct: 1130 PKVALSSR 1137 Score = 168 bits (425), Expect = 7e-40, Method: Composition-based stats. Identities = 58/254 (22%), Positives = 101/254 (39%), Gaps = 15/254 (5%) Query: 654 RSQQATIPGPEWHLNDEL-VVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPL 712 R +PG W + VV++ T + A +A R + I+ +L+ L Sbjct: 1798 RDASPWLPGTRWGQPATMPVVKAAVNWTPSFSPLESKALLPSATSRYEPIK--GELDRSL 1855 Query: 713 SQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKTKLTDG 772 + FG + EE + + I V Y+D Y+++P+ + + L T Sbjct: 1856 TLFGNGMASKIRGLLEEL-GIPKTSTIESVIYSDPYVKSPLVAKMFVDTVAALTKGSTPR 1914 Query: 773 AEVTLDTLFKDKDRPG--NRPFHDWMSIADFQDFADQWFAAALGRPVELTVFDSPRDIPH 830 V+L T + +PG N +DW A + ++ A + V+L + + + + H Sbjct: 1915 PVVSLLTGDRPGTKPGMQNAISNDWRDSAVAEMVLKEY---AKRKDVDLDI--TFQRVAH 1969 Query: 831 HRKLTVTFEDGQVLKIRFDQGMGYWR-INFSSQWHYFDFRDDVSFQLVKMAQACKEGNVA 889 R + V F G+ I FDQG G W + FDFRD Q M + G + Sbjct: 1970 GRYMHVRFPGGKEATIVFDQGFGAWNSVGNGGTSTRFDFRDPPVRQAESMGRC---GAMV 2026 Query: 890 NSEESWATDVLVEV 903 + T ++ + Sbjct: 2027 SKTGLGPTYLVASI 2040 >UniRef50_A3EKW9 Dead/deah box helicase domain protein n=3 Tax=Vibrionaceae RepID=A3EKW9_VIBCH Length = 1629 Score = 444 bits (1142), Expect = e-123, Method: Composition-based stats. Identities = 217/931 (23%), Positives = 378/931 (40%), Gaps = 107/931 (11%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHL-----LARDKKGKLVQ--WENKGGDEFSLQD 53 + +++R++C CGSP++E+ CN C L A D + + D+F+L Sbjct: 458 VSMSRRESCSCGSPMFEMVSCNGCGTSLLATNVKTAADSGDTFLHLTKPDSAIDDFALDI 517 Query: 54 EVPVEHDATEEKVEKENSFQPPLIIAAGETSEAGYTL----QRLDRQTRRIGVINNDSIP 109 + ++ E E+ + +I+ + G ++ G + + Sbjct: 518 AGEDDDVSSYEDEEEGEQYDRFGLISPLPGDKTGEYWLDNQRKATTAKSEGGFLIHRVEG 577 Query: 110 LIINDIEQVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGV 169 + C + + FR G PF ++ ++PT+LEYCQD ++ K Sbjct: 578 YRNSLGALSLRCPCCQQTKVKNFEFFRYFKNGAPFMLSTVIPTLLEYCQDGKKEQKKG-- 635 Query: 170 GPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNA 229 P GRR+ITFTDSRQGTAR + + QQ+AER LR ++ ++ ++ + Sbjct: 636 -----PWNGRRMITFTDSRQGTARFSAKSQQDAERQFLRSTLFHLILDKAIRESGSGSPE 690 Query: 230 NADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRT 289 +A+LEK M D AK+S+ + + A+ A++ VS + Sbjct: 691 SAELEKYK----------------KMLDMAKMSEDEDMVEFVESKIASLVGASSKPVSVS 734 Query: 290 WTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLET 349 W++ + L ++ +++ + ++ + + P L+ +LL REF RPKR N+LET Sbjct: 735 WSDAEDFLADQKEVQLWIKKFYEHFDDRM-EMVTHPKLLARLLLLREFNSRPKRQNTLET 793 Query: 350 QGLVQVGYQGL-EKIHKSPLHWQEK----GLTLDDWRDFLKVTLDHYVRESNFTQLDDEL 404 GLV + Y L +K + +P W +W +FL + ++ +VR +L E Sbjct: 794 MGLVAMEYPLLAQKANTAPKEWLRFFDDVEKGRTEWVNFLTLAVNFHVRSLKAVRLTKEQ 853 Query: 405 KNWIGSRFSSKFVRNPESKDPEDNQNRRWPQI-RNGNVSHRLAKLLMLGAGFKTVNAATI 463 NWIG+++ + + WP++ R G++ RLA+LL A Sbjct: 854 LNWIGAKYQPTLLVAQG-ESTHIWNVESWPKVTRGGSIQPRLARLLSCAFNIDLDEAYNR 912 Query: 464 DIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEH-MTFSLITDAWICPVTNKILDTAFKG 522 +N L++AW L +VL P G+ F L E ++FSL+ + CP T KI+D G Sbjct: 913 AEVNEILRQAWNALQ--SSVLTPSGDGFRLELEQQVSFSLLKEKHQCPHTQKIIDKPLLG 970 Query: 523 LTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLA--KARDWVSHDPL 580 +TPYL E + +++ P+ E + K R+W D L Sbjct: 971 ITPYLNASGERE--------EQLCRRLLTPDYPYPFGRDPKTGESVELAKTREWQEQDAL 1022 Query: 581 IAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTME 640 I +R EN W+DI DRV+E Y+R AEHSAQ + +L+ YEK FK G++NVL+CSTTME Sbjct: 1023 I-DIRKENAWSDIADRVIERTPYFRVAEHSAQLKASQLRQYEKDFKEGRINVLSCSTTME 1081 Query: 641 MGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVK 700 MGVD + +A + + R K++ Sbjct: 1082 MGVDIGGISVVAMNNAPPNP--ANYLQRAGRAGRRGESKSI------------------- 1120 Query: 701 DIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGS 760 + + K F W + Q + N ++ + R++ + + L Sbjct: 1121 ALTLCKSTPHGEHIFSNTRWAF------DTQIKVPNVSLSSEYIVRRHVNSLLLSTFLNK 1174 Query: 761 ILRPLKTKLTDGAEVTLDTLFKDKDRPG---NRPFHDWMSIADFQDFADQ----WFAAAL 813 ++ + ++ T FK F DW + AL Sbjct: 1175 VVSS-----ENNLKLNCGTFFKAGHELTASYAEQFIDWCWEEAQEMVQSGLDTLLLRTAL 1229 Query: 814 GRPVELTVFDSPRDIPHHRKLTVTFEDGQVLKIRFDQGMGYWRINFSSQWHYFDFRDDVS 873 + V ++ H + + ++ +Q + + + V Sbjct: 1230 EANSRVEVLNTAAK--HLETIMSRWT--AEHQLLLEQS----KSLADNPNVLSTAQAAVE 1281 Query: 874 FQLVKM----AQACKEGNVANSEESWATDVL 900 Q+ ++ + + TDV+ Sbjct: 1282 SQIQRLEGEFLLSDLARKGFLPGYGFPTDVV 1312 >UniRef50_C3MEZ4 ATP-dependent helicase n=1 Tax=Rhizobium sp. NGR234 RepID=C3MEZ4_RHISN Length = 2042 Score = 444 bits (1140), Expect = e-122, Method: Composition-based stats. Identities = 196/712 (27%), Positives = 316/712 (44%), Gaps = 59/712 (8%) Query: 1 MYVNQRQNCD-CGSPVYEVAFCNDCNEPHLLARDKKGK-LVQWENKGG--DEFSLQDEVP 56 ++ ++ +NCD CG+PV E+ C +C EP L A + + ++ +G DEF + E Sbjct: 450 LFPSKFENCDTCGAPVVELISCTECGEPMLEAEEDRSDGKLRPSRRGLERDEFQYEAERD 509 Query: 57 VEHDATEEKVEKENSFQPPL---------IIAAGETSEAGYTLQRLDRQTRRIGVINNDS 107 E DA ++ + E L I+ A S++ + + + DS Sbjct: 510 GELDAEGDEDDDEEDGDASLAHKYMAKQTILFAATPSKSSRLISLSTKDWSVLAGPTTDS 569 Query: 108 IPLIINDIE-QVCSASGCGYRGMSGKQ-PFRRALLGGPFYVTNIVPTVLEYCQDFTSDEG 165 + L + CG + G R G PF VT P +LE + E Sbjct: 570 VNLRYEEKSVAEGVCPCCGVNALRGIDNLLRPVRFGAPFMVTAAAPILLEAVDPKPNSE- 628 Query: 166 KEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTST 225 +LP GR LI+FTDSRQGTARM+ + Q E+ER+ +R + + Sbjct: 629 ------RTLPSSGRGLISFTDSRQGTARMSAKFQAESERNFVRSFIYHAVQ--------G 674 Query: 226 APNANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATIL 285 A A+ D ++A + Q E P + Q EQL + + + Sbjct: 675 ALAADEDTPEVA-NVRTVIAQIEPLVGTN-PGLQLVLDGQREQLAKLTSES--------V 724 Query: 286 VSRTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTN 345 + W +++ L R ++ + + P+ F G KL+E LL RE RRP+R N Sbjct: 725 IGVNWNALIDRLARRPEVEFWMKEVWEPRDPDRF---GDAHKLAEFLLLRELFRRPRRAN 781 Query: 346 SLETQGLVQVGYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELK 405 SLET L + + +E+I P + +G T++DWR FL ++H++R + +D Sbjct: 782 SLETLALACLKFPSVERIASMPPAFTRRGKTINDWRYFLTAIINHFIRAKSAVDVDRRTM 841 Query: 406 NWIGSRFSSKFVRNPESKDPEDNQNRRWPQI-RNGNVSHRLAKLLMLGAGFKTVNAATID 464 WI + + + P D + WP++ RN + LL++G + + D Sbjct: 842 RWIAPQIKLRPLLGPGRSSGGDKRYVIWPKVPRNLSSLSTPQTLLIMGLKLDIADPSDRD 901 Query: 465 IINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLT 524 + L+ AW QL VL D + L + +TD + CP+T K ++ A GLT Sbjct: 902 DMQDCLQMAWDQLQQ---VLNADRDNPALDFSKSVVAPVTDGFRCPITRKAIEIAPFGLT 958 Query: 525 PYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQL 584 PY+ + + + T + MPEI + +D A +K DW++ D +A L Sbjct: 959 PYVRINSAVSNAT----------PLRMPEIPFQLIAPDDPASAKSKISDWLNTDGRVADL 1008 Query: 585 RSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVD 644 + +W +I++R+ Y R+AEHSAQQ S+RL+ YE FK+G++N+LNCSTTMEMGVD Sbjct: 1009 KKAGIWINISERIALFVDYARSAEHSAQQESQRLRQYETDFKDGRINILNCSTTMEMGVD 1068 Query: 645 TDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAV 696 V T+ + +I + R ++ A Sbjct: 1069 IGSVSTVMMTNVPPSI--ANYRQRVGRAGRRRQPFSMAFTFCRDRPLDREAF 1118 Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats. Identities = 46/242 (19%), Positives = 81/242 (33%), Gaps = 10/242 (4%) Query: 661 PGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFW 720 PG W E + + I P++ K + I K L+ +S FG Sbjct: 1809 PGIAWGQPAEGSIFRGTIQDTASTNPISPSELLPQ-STAKVLLIEKNLDRSMSLFGTGMA 1867 Query: 721 DVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKTKLTDGAEVTLDTL 780 ++ + + I+ + Y D Y+++P+ LL L T Sbjct: 1868 GLIRTNLANL-GFEADAAISRIEYKDPYVRSPLVSKLLIDTAAALFKSSTSPVLKITTAP 1926 Query: 781 FKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVELTVFDSPRDIPHHRKLTVTFED 840 K P +DW ++ V++++ D H R + ++F D Sbjct: 1927 PKAPVSPPKHISNDWPDGHLVSSVQAEYGRLK-NIDVQVSLG----DCGHGRFMELSFTD 1981 Query: 841 GQVLKIRFDQGMGYWRINFSSQWHYFDFRDDVSFQLVKMAQACKEGNVANSEESWATDVL 900 G+ + FDQG G W DF Q M ++ + + W T V+ Sbjct: 1982 GRAATVIFDQGFGAWTPTVRDSRTLHDFTQTPYAQASSMQKSNP---MLARKGVWPTYVV 2038 Query: 901 VE 902 + Sbjct: 2039 LR 2040 >UniRef50_A0KWV0 DEAD/DEAH box helicase domain protein n=2 Tax=Gammaproteobacteria RepID=A0KWV0_SHESA Length = 2120 Score = 427 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 206/834 (24%), Positives = 343/834 (41%), Gaps = 106/834 (12%) Query: 1 MYVNQRQNC--DCGSPVYEVAFCNDCNEPHLLAR-----DKKGKLVQWENKGGDEFSLQD 53 ++V++RQ C C SPVYE+ C C EP L A L+ E+ DE+S + Sbjct: 500 VFVSERQKCLDGCSSPVYELTHCAVCKEPSLAASLVIDSHGNRVLLSREHDDLDEYSDEI 559 Query: 54 EVPVEHDATEEKVEKENSFQPPLIIAAGETSEA-------GYTLQRLDRQTRRIGVINND 106 E D E V E+ + + I + ++S+ LD TRR+ + + Sbjct: 560 E-----DNQEIDVILEHKTRNNVQIFSSQSSDLERYKSFGSSVEAYLDLSTRRVKTRSEN 614 Query: 107 S--IPLIINDIEQVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDE 164 + + D + + C F+RALLG PF + N+VP +L + D Sbjct: 615 TLAVRYTTADRDSYLRCACCDATEAVASSTFKRALLGAPFLMGNLVPELLRHIPRKNDDS 674 Query: 165 GKEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTS 224 G RLITFTDSRQGTAR + ++Q ++ER R + ++ Sbjct: 675 -----------LFGARLITFTDSRQGTARFSAKLQLDSERKWCRSKIYREIAMR------ 717 Query: 225 TAPNANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATI 284 ++ + + ++A K E + Q K+ + E+L++ A + Sbjct: 718 SSDSELYNDPQIATFNKILDSNPEAATKDFILSQIKI---RLEELKKVSFKLNWVAAVEL 774 Query: 285 LVSRTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRT 344 L + T+ + + D+ +L + + + L+E+ L REF RRPK Sbjct: 775 LAN---TDEIRLMAGDLDVEDYMLPGEYSNRDQRL---ENTKHLAELFLLREFARRPKNA 828 Query: 345 NSLETQGLVQVGYQGLEKIHKSP-----LHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQ 399 N+LET GLV++ Y L+ I + W GL LDDW+ +LK+ LD YVRE+ Sbjct: 829 NNLETLGLVKIVYPALDSITEEDLRVGCREWGTLGLNLDDWKSYLKIILDFYVRENTLID 888 Query: 400 LDDELKNWIGSRFSSKFVRNPESKDPEDNQNRR---WPQIRNGNVSHRLAKLLMLGAGFK 456 + NW+G + ++ ++ PE + + + + +P + GN H+L ++L L + Sbjct: 889 IHSYQVNWMGGKLFARLLQGPEFEGKSEEEKKAIWAFPSVNKGN-QHKLVRMLELFSK-- 945 Query: 457 TVNAATIDIINTWLKEAWAQLTGPLAVLKPDGN------RFYLPKEH-MTFSLITDAWIC 509 ++ N L+ AW L + ++L + +F LIT+A +C Sbjct: 946 RSAKDNPELFNGILRFAWRTLINKEILQHYKDGNKEWREGYHLKLSNSASFELITNASVC 1005 Query: 510 PVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLA 569 P+TN+ LDT+F+G++PYL + E + + + P++ + + SQ Sbjct: 1006 PITNRWLDTSFRGISPYLTSKTEIEDCLVKNTNCKIPHPA--PDLLQSNSSQS------- 1056 Query: 570 KARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQ 629 R+W+ H+ I ++ + +W DI D + R+AEHSAQQ ++ L+ +EK FK Sbjct: 1057 -LRNWIRHNEFILNMKKQGIWRDITDAALLPPVMLRSAEHSAQQYTDNLKLFEKAFKKDF 1115 Query: 630 LNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILP 689 LNVLNCSTTMEMGVD ++ +A + + + R ++ Sbjct: 1116 LNVLNCSTTMEMGVDIGSLVMVAMNNAPPST--ANYLQRAGRAGRRGESTSIVFTF---- 1169 Query: 690 AKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYL 749 K F W +L V R++ Sbjct: 1170 ---------------CKSTPHGERIFANPKWPFETPIPVPKVAL------ESVTIVHRHI 1208 Query: 750 QNPVALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQD 803 LL L +K + D F W+S D Sbjct: 1209 NA----FLLSRYLNTKFSKENLPTLKSGKFFTSDTGTAIYERFMSWLSSEAVDD 1258 Score = 144 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 59/224 (26%), Positives = 96/224 (42%), Gaps = 13/224 (5%) Query: 663 PEWHLNDELVVRSLG-------YKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQF 715 +W ++ + + L + L ++ T+ + + DI +LN P ++F Sbjct: 1880 AQWGSSEGASLVAAKPMAVDLKTSPFNLEDLALKSELTSNIALIDDI--TTKLNVPFNRF 1937 Query: 716 GQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKTKLTDG-AE 774 G + LF + + + I V YTDRYL +P++L L+ SI +K + E Sbjct: 1938 GSSIFA-LFEEIIPRFKNVFDQGIENVTYTDRYLISPISLGLIISIFAHVKAIMGIRDFE 1996 Query: 775 VTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVELTVFDSPRDIPHHRKL 834 + DR ++ +I + DF D + G V F S DI H R L Sbjct: 1997 IITCHPSAAGDRKPYCIADNFSNIDEVNDFIDS-VCSTYGINV-YPEFASKNDIDHGRCL 2054 Query: 835 TVTFEDGQVLKIRFDQGMGYWRINFSSQWHYFDFRDDVSFQLVK 878 T T ++G+V++ FDQGMGYW FDF +F + Sbjct: 2055 TFTLKNGEVVRFLFDQGMGYWATRRPYSRIKFDFESVGAFDINS 2098 >UniRef50_A5P8I3 Putative uncharacterized protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P8I3_9SPHN Length = 1988 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 177/718 (24%), Positives = 288/718 (40%), Gaps = 68/718 (9%) Query: 1 MYVNQRQNCD-CGSPVYEVAFCNDCNEPHLLARDKKGKLVQW-ENKGGDEFSLQDEVPVE 58 + + R C C S V+E+ C DC EP L A D ++V + DEF +D Sbjct: 435 VLFDHRDQCPHCQSMVFEIQNCLDCGEPFLPADDMGDRIVPRRSDHDADEFR-EDSYRDR 493 Query: 59 HDATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQV 118 +++ ++ P +IA S+A T + G ++ + +++ Sbjct: 494 DHDDDDEEDEHEGIGHPRLIAINPKSKATATAFDVSS-----GEFTGEAGHFHLTQLDEG 548 Query: 119 CSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRG 178 C G+ G PF N P +LE ++ +LP G Sbjct: 549 -RCPACLGNKRRGRPAVFPFRFGTPFLTQNAAPILLEGVSPHQAE--------HALPFDG 599 Query: 179 RRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAA 238 R+LI+F+DSRQGTAR A ++ ER +RG + + + T L+K AA Sbjct: 600 RQLISFSDSRQGTARFAANIETNGERGFVRGFIYHAVQKAAQGSDLTDERREELLKKKAA 659 Query: 239 RAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELK 298 A + A + + + GG A IL W ++V+ L Sbjct: 660 LANLVAD----------------MPAFKDDIAKIDAELAGGAATGIL----WKDLVSALA 699 Query: 299 ERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQ 358 I G + + + E F++N L+ +L RE RRP+ N++ET GL ++ + Sbjct: 700 SEPAI-GMMAKVWDLDRSERFHDN--REALARFMLLRELARRPRNANAMETLGLARLRFP 756 Query: 359 GLEKIH--KSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKF 416 +E+I K P +KG +++DWR FL +D+ +R ++DD W+ R + Sbjct: 757 DIERIDPDKLPELVGQKGYSIEDWRGFLYYMVDY-LRGQFAIEVDDGDARWMPGRARPRN 815 Query: 417 VRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQ 476 V P+ + P ++ WP + LL + IN + AW Q Sbjct: 816 VIGPD-QPPGAKRDVYWPLVNTKGRQPDSILLLASAMNLDLTSQRDRHEINQVMHAAWNQ 874 Query: 477 LTGPLAVLKPDGNRFYLPKE-HMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEH 535 L +L G F L E + AW CP+T ++L G +P L Sbjct: 875 LAP---LLSGVGGTFSLRLEQKAEIEAVDRAWQCPLTRRVLPRLVFGRSPNLVGS----- 926 Query: 536 LTLAQYDTFVAQKVTMP-EIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDIN 594 + + K +P E KL R++ + + R W+ D L+ LR ++WT ++ Sbjct: 927 ------GSKIDGKAVLPVEFPKLPRTRPLSSGDKKEIRGWLVEDKLVQALRQLHLWTYLH 980 Query: 595 DRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASR 654 D+ Y R EHSAQQ RL+ +E+ FK G +N+L CSTTMEMGVD + + Sbjct: 981 DQAALATPYLRAEEHSAQQPPHRLREFEEQFKEGDINLLACSTTMEMGVDIGSIEAVLMT 1040 Query: 655 SQQATIP--------GPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQI 704 + +I + ++L F PA + + Sbjct: 1041 NVPPSIANYNQRAGRAGRRGQGFSTSLTIARNTPLDLETFADPAGYLRRKLASPRVSL 1098 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 65/245 (26%), Positives = 98/245 (40%), Gaps = 12/245 (4%) Query: 654 RSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLN-GPL 712 R AT PG W + + + + I P V +++ + P+ Sbjct: 1744 RDMSATQPGERWGMGETHAIVAGTLSDPTAYSPINPEDLERQVAAGDQVELMQGFGQCPV 1803 Query: 713 SQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKTKL--T 770 QFG+RF L EA + + + Y DRYL +P+ + L L L Sbjct: 1804 GQFGKRFGSKL-KQQMEAAGVWRPGSLVRITYADRYLNSPLTMLLFLRTCEALSADLKAD 1862 Query: 771 DGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVELTVFDSPRDIPH 830 EV + DR + HDW D + A+ G V+L V ++ H Sbjct: 1863 SPVEVDILVQPLKNDRSPYQIKHDWTYEDDRAEVAE-LLGEKFGLDVDLQVT---QNSDH 1918 Query: 831 HRKLTVTFEDGQVLKIRFDQGMGYWRINFSSQWHYFDFRDDVSFQLVKMAQACKEGNVAN 890 RKL + + DGQ + + DQG GYWRI S H DFR + Q ++ ++ VA Sbjct: 1919 GRKLELEYVDGQKVLVLLDQGFGYWRIAGSPPRH--DFRSAPAAQASELLRSSTA--VAG 1974 Query: 891 SEESW 895 ES+ Sbjct: 1975 VGESY 1979 >UniRef50_Q0FU13 Putative uncharacterized protein n=1 Tax=Roseovarius sp. HTCC2601 RepID=Q0FU13_9RHOB Length = 2003 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 184/731 (25%), Positives = 294/731 (40%), Gaps = 73/731 (9%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLARDKKG--KLVQWENKGGDEFSLQDEVPVE 58 +++ QR++C CG+PV+E+ C++C P LLA ++ G +++ + +E + +V E Sbjct: 449 IHLFQREHCGCGAPVFEIGACSECGTPWLLAHEESGKQRILHQSDSDTEEDDFRLDVEPE 508 Query: 59 HDATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLII-NDIEQ 117 D + V ++ + S + L+ D R + + + + ++ Sbjct: 509 DDGDDASV------SAARLVGPADDSHPVHQLRHSDAVVRDVLTDEPGHSTIRLCSHDDR 562 Query: 118 VCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGR 177 C A R Q G PF + N +P +LE +G P Sbjct: 563 GCCAGAHHSRSRVAVQ-----RFGSPFLLGNAIPQLLEAMPRPDGIQGPA-------PMG 610 Query: 178 GRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLA 237 GRRL++FTDSRQGTAR A ++QQEAER R ++ + + A A L+ L Sbjct: 611 GRRLLSFTDSRQGTARFAAKLQQEAERGLTRAAIWHAVQSKAAGDPTKAAELRAQLDALR 670 Query: 238 ARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNEL 297 G P A L A +QL +A WTEM+N L Sbjct: 671 ----------------GNPLMASLLPALEKQLAEAEGGF---------APVPWTEMLNTL 705 Query: 298 KERADIR---GPVLQYNHYLKP-EVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLV 353 + D+R G V Q P P++L+++LL RE RRPK N++ET GL Sbjct: 706 AQVPDLRSFAGDVWQGRGASHPFGGLTLAREPVELAKLLLLREIFRRPKLQNNVETMGLA 765 Query: 354 QVGYQGLEKI---HKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQL---DDELKNW 407 +V + LE+ P +E G W + +D R + +L +W Sbjct: 766 RVCWPELERQMEESDIPAPLREAGHEAPVWIALGQAAIDMAFRNRLAVHMQQTPVDLAHW 825 Query: 408 IGSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIIN 467 I R ++ V P + E + +RR + S L +L+ +A ++ Sbjct: 826 ISPRQAATQVLEPGVEFDETSASRRTHKWWTAYSSAGLVQLIYRLIDGDDESATDLERCQ 885 Query: 468 TWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYL 527 T L WA L + + + D + L + AW CPVT K+L G+TP Sbjct: 886 TVLDALWATLRAKV-LTRADPGCWQLDFAKSALIGMESAWQCPVTGKLLPYTLAGITPND 944 Query: 528 PTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSE 587 +VT+P + + AE A+ W++ D IA LR + Sbjct: 945 AASPEA------------MAEVTLPHLPVTSPAGLTGAE-RARVESWLTTDETIATLRKK 991 Query: 588 NVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDR 647 +WTD+ DR + R EHSAQ E L+ YE F+ G++N+LNCSTTMEMGVD Sbjct: 992 GLWTDLQDRAAAFAPFLRAQEHSAQIDRESLKGYEDAFRKGRINILNCSTTMEMGVDIPN 1051 Query: 648 VMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQ 707 V T+ + + + R + + + + + Sbjct: 1052 VGTVVNTNVPPAP--SNYRQRIGRAGRRGEPWAMSFTFCKDKPLDWQVFRTPETL-LRAE 1108 Query: 708 LNGPLSQFGQR 718 + P + Sbjct: 1109 IPAPTVRLDSP 1119 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 50/252 (19%), Positives = 97/252 (38%), Gaps = 16/252 (6%) Query: 646 DRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDI--Q 703 + + ++++ +P W +E + K +L L A+ I Sbjct: 1755 GQAQAVTAQTEDNAVPDGRWGRPEEGPILLGPRKPEDLGA-SLSAEKLAVFNEGNSIYAD 1813 Query: 704 IHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILR 763 + + + FG+ FW ++ + L + V Y+DRYL+ P+ + LL +LR Sbjct: 1814 AGTRFDRSVGHFGREFWKMVREMRPQ---LSREVPLASVTYSDRYLRAPLPVRLLYEVLR 1870 Query: 764 PLKTKLTDGAEVTLDTLFKDKDR--PGNRPFHDWMSIADFQDFADQWFAAALGRPVELTV 821 + + + + + T +D++ P +W +D AL V++ + Sbjct: 1871 TMPDR-NEATTIMVRTSAQDRESRFPSRDIEDNWT-----EDRLRLQTMKALLPGVDVRI 1924 Query: 822 FDSPRDIPHHRKLTVTFEDGQVLKIRFDQGMGYWRINFSSQWHYFDFRDDVSFQLVKMAQ 881 + PH R +T+ DG+ +I DQG+G W + FD DD Q +A+ Sbjct: 1925 LP-RKLCPHPRSFELTWRDGRTARIHLDQGLGSWTVAD-HLAPRFDVEDDPKRQASALAK 1982 Query: 882 ACKEGNVANSEE 893 + Sbjct: 1983 MTFSLRNRQTSG 1994 >UniRef50_A1U8P2 Helicase domain protein n=1 Tax=Marinobacter aquaeolei VT8 RepID=A1U8P2_MARAV Length = 1422 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 198/601 (32%), Positives = 289/601 (48%), Gaps = 70/601 (11%) Query: 209 GSVVEILSWHQRTQTSTAPNANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQ 268 G V +IL Q + NA A ++ +QAE+ GM A +++AE+ Sbjct: 22 GLVFQILRNKQAKADAGPKNAPT------ASYEELIQQAEQLEKMGMHAAASGVRSEAEK 75 Query: 269 LEQAYQAATGGKAATILVSRTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKL 328 L G ++ + W E+V +L D++ +L YN Y P++FN N G + Sbjct: 76 LNS-------GGSSEDRLEVPWPELVEDLAATNDLKYSILDYNRYANPQLFNGNEGSYSM 128 Query: 329 SEMLLFREFMRRPKRTNSLETQGLVQVGYQGLEKIHKSPLHWQE-----------KGLTL 377 + +LL REF RRPK NS ET GLV VGY+GLE+I +P W E LTL Sbjct: 129 ARVLLLREFARRPKNQNSTETLGLVSVGYKGLEQITHTPDFWTETQARSADGKSESRLTL 188 Query: 378 DDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVRNPESKDPEDNQNRRWPQIR 437 DDW+DFLKV LD +VRE+ F + + ++W+G+RF+ K + P S D +++ WPQ + Sbjct: 189 DDWKDFLKVALDFHVRENTFLRFGETERSWMGARFAPKELYAPGS-DVSGTRDKAWPQFQ 247 Query: 438 NGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEH 497 G+ RL K+L LG G T + + +N WLK AW L +L+ G + L +E Sbjct: 248 KGS-QSRLVKVLSLGTGLNTELESHRNKLNGWLKAAWQALV-KSQILQTQGGGYALSRET 305 Query: 498 MTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKL 557 +TFSL AW+CPVTN+++DT F+GLTPYLP E + ++ MPE L Sbjct: 306 LTFSLPKSAWVCPVTNRLIDTTFRGLTPYLPNKAEVEK--------YRCTRIDMPEFTSL 357 Query: 558 DRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSER 617 E L R+ V+ + ++A LR +N+WTDI+DR EGGFYYRTAEHSAQQ++ER Sbjct: 358 APEGETEGV-LRSIRNRVAANDVVASLREQNLWTDISDRTAEGGFYYRTAEHSAQQAAER 416 Query: 618 LQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLG 677 LQ YE FK G++NVLNCSTTMEMGVD + + + + R Sbjct: 417 LQRYEDDFKKGKINVLNCSTTMEMGVDIGGISAVVMNNVPPHP--ANYLQRAGRAGRRSE 474 Query: 678 YKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNT 737 + V + L + F W ++ Sbjct: 475 PRAV---AYTLCKPDPHNTRA----------------FQNPQW-------PWVTAIPAPV 508 Query: 738 -RITGVHYTDRYLQNPVALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWM 796 ++ R++ + LL + L+ D + + F + F DW+ Sbjct: 509 ITLSAAPLVQRHVNS----FLLANFLKSETDSEDDRTRLNV-HWFFGGNPSVCERFVDWL 563 Query: 797 S 797 Sbjct: 564 D 564 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 61/249 (24%), Positives = 118/249 (47%), Gaps = 5/249 (2%) Query: 647 RVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDI-QIH 705 ++TL + S A PG W D+ + ++ + L +A + ++ Sbjct: 1176 GLVTLITNSTNAQSPGENWLSGDDQALWVYSHQEPVFSASSLDMAGWSAQPSGAAVVELT 1235 Query: 706 KQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPL 765 +LNG + + FW +L ++ +I + Y DRYL++P A+ +L +IL+ + Sbjct: 1236 TELNGSIQDLARNFWSILKQKAPSYAEAIDQEKIVSLQYEDRYLKSPWAVVMLANILKAV 1295 Query: 766 KTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALG-RPVELTVFDS 824 ++ D +++ T+ D R + DW++ + + + AALG + V+ V + Sbjct: 1296 --EIGDETSLSVITMPGDGRRDSRMAWDDWVNAETQRVVSGAFLRAALGVKQVDFQVNND 1353 Query: 825 PRDIPHHRKLTVTFEDGQVLKIRFDQGMGYWRI-NFSSQWHYFDFRDDVSFQLVKMAQAC 883 R++ H R L++ G+ +K+ FDQGMGYW + F YF+F + Q+ +M + Sbjct: 1354 RRELTHRRILSIGLASGRTIKLAFDQGMGYWEMKAFRHDLKYFNFDLGLEAQVQRMLELD 1413 Query: 884 KEGNVANSE 892 K+G + Sbjct: 1414 KDGRLVVVA 1422 >UniRef50_B0MUI1 Putative uncharacterized protein n=3 Tax=cellular organisms RepID=B0MUI1_9BACT Length = 2047 Score = 373 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 173/810 (21%), Positives = 291/810 (35%), Gaps = 89/810 (10%) Query: 1 MYVNQRQNCD-CGSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEF------SLQD 53 + Q NC C S + E+A C+ C P ++ K + D +D Sbjct: 448 LTTYQNMNCPVCKSKMLELATCSSCGSPIIVGETNTTKGFRMHTNVIDLDKSLFYEQKED 507 Query: 54 EVPVEHDATEEKVEKENSFQPPLIIAAGETSE-----AGYTLQRLDRQTRRIGVINNDSI 108 + +E E VE+ + A A T + Q +I ++ D+ Sbjct: 508 LIDLEDMGNIEDVEQNEADGFSRFFFAIPKKACLRKNANRTYHIFNHQNGKIELVPEDNR 567 Query: 109 PL--------------------IINDIEQVCSASGCGYRGMSGKQPFRRALLGGPFYVTN 148 D +C G R + Sbjct: 568 SNKCFTSLKSEESIPVIYQSLRHSGDNHVLCPHCGNNLSEFKNLDYLR---ISATQIGRT 624 Query: 149 IVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLR 208 + +L+ + S++ GR+ ITFTDSRQG+AR A+ + Q+ ERS +R Sbjct: 625 LATLLLDNAEPIDSNDADVV-------YEGRKYITFTDSRQGSARSAMGLNQDVERSWIR 677 Query: 209 GSVVEILSWHQRTQTSTAPNANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQ 268 S+ L A+ L + E+AE + + + L E+ Sbjct: 678 ASIFHKL-------------ADMRLNDVKPGGLTPDEEAE--YNAYLSIREHLPTLLFEK 722 Query: 269 LEQAYQAATGGKAATILVSRTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKL 328 +Q + G +W ++ L+ ++ + Y H K Sbjct: 723 FKQLEKKKNGIPVIPNPEEVSWGQISQSLENDSNFK---KLYEHVDKARGRKNFENATDY 779 Query: 329 SEMLLFREFMRRPKRTNSLETQGLVQVGYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTL 388 + LL +F PKR NSLET G V++ Y L K K P Q K T DW++FLK+ + Sbjct: 780 LKALLVDQFGWIPKRANSLETMGFVRLVYPAL-KNAKCPALLQ-KRCTDTDWQNFLKICM 837 Query: 389 DHYVRESNFTQLDDELKNWIGSRFSSKFVRNPESK-DPEDNQNRRWPQIRNGN-----VS 442 D+ +R L K+++ + S+ + +W ++ + Sbjct: 838 DYVIRGGRHYMLSGAYKDYLTQNKYCSPIYPSNSELRKNGSPVSKWFKVNVSSKGINENQ 897 Query: 443 HRLAKLLMLGAGFKTV---NAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFY---LPKE 496 +RL LL + + N I IN+ L AW L + N+ Y L + Sbjct: 898 NRLVLLLCAVLDYDDISQINQIKIADINSILDAAWDFLKQNVLEATDVENQGYMLDLMGD 957 Query: 497 HMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWK 556 + LI ++CPV N I+D F G +P + +IS E +D F + + ++ Sbjct: 958 KVKLQLIEKGYLCPVDNVIIDAPFCGYSPRMNGYISRE-----NFDRFKIKTEFVNPLFP 1012 Query: 557 LDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSE 616 + + +W+ + ++ ++ V+ +N RV + +AEHSAQQSSE Sbjct: 1013 FKSADQ----TEKNVMEWIEKN--FSEQKAAGVFGVMNSRVFASKPIFISAEHSAQQSSE 1066 Query: 617 RLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSL 676 L YE+ F G++N+L+CSTTMEMGVD + + + + R Sbjct: 1067 DLDRYEREFNEGKINILSCSTTMEMGVDIGGITEVVMNNVPPK--SSNYLQRTGRAGRRS 1124 Query: 677 GYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNN 736 K + L P D I PL + R + S + + Sbjct: 1125 ETKALALTVCA-PNPIGTHTWNNPDYPITHVTETPLLKLESRQLIQRHVNAMVFASFVAD 1183 Query: 737 TRITGVHYTDR-YLQNPVALALLGSILRPL 765 V T R + ++ L + Sbjct: 1184 QGGIRVTATLRDFFVTAEGMSFFDKFLNYI 1213 Score = 105 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 70/228 (30%), Gaps = 16/228 (7%) Query: 659 TIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQR 718 T W D + I + +A + + S G+ Sbjct: 1807 TSYSKNWGSGDVFITTQPNS---LSYADINRMQLLSAFSSDDSSFMFEYRIREHSSLGRF 1863 Query: 719 FWDVLFNDHEEAQSLMNN--TRITGVHYTDRYLQNPVALALLGSILRPLKTKLT----DG 772 F + + +++N + + Y+DRYL+ P+ LL ++ LK + Sbjct: 1864 FDSLKAPETGNWNRIISNLRGKAVSIEYSDRYLKTPLGCMLLAKMISSLKNEADLVLVSI 1923 Query: 773 AEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVELTVFDSPRDIPHHR 832 + + + + D+ + F G E+ + H R Sbjct: 1924 KVIVTNIVSINDPDMAVNAIKDFTNGKKRNHFLKDAIFELTGIEPEIQDTGY---VEHER 1980 Query: 833 KLTVTFEDGQVLKIRFDQGMGY-WRINFSSQW--HYFDFRDDVSFQLV 877 LTV D + IR D G+ W DFR+D + L Sbjct: 1981 CLTVK-ADNAEICIRPDAGIAKGWAPFGRDNAECTDRDFREDWNIDLE 2027 >UniRef50_D1P9G0 Putative DEAD/DEAH box helicase n=1 Tax=Prevotella copri DSM 18205 RepID=D1P9G0_9BACT Length = 2132 Score = 325 bits (832), Expect = 5e-87, Method: Composition-based stats. Identities = 161/981 (16%), Positives = 309/981 (31%), Gaps = 148/981 (15%) Query: 13 SPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHDAT---------- 62 +P+ E++ C C E LA D ++ +D + Sbjct: 475 APLLELSRCKHCGEYVALASVNTEDWTYEAIATDDSDMFDLDMAENNDNSTKKYAIFGLS 534 Query: 63 EEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINN-----DSIPLIINDIEQ 117 EK K + ++ G+ ++ +G I ++ ++ +Q Sbjct: 535 NEKNMKGDGNVKFRLVPGGKLQPLAPADEKETGNWHVVGNIQGCCPYCNAKQTKNHNTDQ 594 Query: 118 VCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGR 177 G + Q FR L F + P++L+ D+G G L Sbjct: 595 DVEGDANGNMEDNRLQKFR---LSADFISRMMAPSILDQL-----DKGDSKTGGIVLHD- 645 Query: 178 GRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLA 237 G++ I+F DSRQ A+ ++ E ER ++ L + + L + Sbjct: 646 GQQYISFVDSRQAAAKATLKQNLEQERMWFNSTIYHELCRRKANGLTKEAAMAQILAAVQ 705 Query: 238 ARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNEL 297 A + + PD K+ Q Q +++ Y + + + Sbjct: 706 ADPMSMMKYTPMMANLQSPDP-KVVQKQLDEMSCKYMTWSEI-VELLKNDPYCPVFASVF 763 Query: 298 KERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGY 357 +R+ V + K + ++ RP S ET GL + Y Sbjct: 764 VKRSGDSDEVEDG--------LPSDEIIDKYIQSIMVMYLAHRPASAASPETLGLFETCY 815 Query: 358 QGLEKIH--KSPLHWQE------KGLTLDDWRDFLKVTLDHYVRESNFTQL----DDELK 405 LEKI K+ + + +T +DWR+ ++V LD+ VR + L +D++ Sbjct: 816 PQLEKIKLPKAVEDFNDLLDNPVNQITEEDWRNLMQVYLDYTVRSNQSFYLRIPGNDKID 875 Query: 406 NWIGSRFSS-KFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATI- 463 + RF++ K R P +K + ++ + L L+ T+N A Sbjct: 876 IFSTVRFATEKPRRRPFNKPKLEEG-----KVSTARIVRYLCALIARDDNTLTMNDAQRQ 930 Query: 464 --DIINTWLKEAWAQLTGP----------------LAVLKPDGNRFYLPKEHMTFSLITD 505 I+ + W LTG K + RF L + F L D Sbjct: 931 YFHEISAVIDSLWETLTGDEYKILQVGQRLDDTGHFVNEKDNAPRFNL--NDLCFKLYDD 988 Query: 506 AWICP---------VTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWK 556 ++C V + + FK +PYL E + + E W+ Sbjct: 989 VYLCDTKADGNRHAVCLRPIGNNFKRFSPYLEGTTPVEL------------REDLHEQWE 1036 Query: 557 LDRSQEDYAEGLAK--ARDWV-SHDPLIAQLR---SENVWTDINDRVVEGGFYYRTAEHS 610 + A+ K W +H L+ ++ V++D + + + EH+ Sbjct: 1037 AFPYYKGSAKEGDKKTIESWAKTHRALLWNNNIWGTDGVFSDRLEDIHAFPNLFVQQEHT 1096 Query: 611 AQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDE 670 AQ + + FK+ +N+L CSTTMEMGVD + + S + Sbjct: 1097 AQVDKSVARGLQSKFKDHTINILACSTTMEMGVDLGNLEVVLLSSVPPLP--ANYKQRAG 1154 Query: 671 LVVRSLGYKTV----------ELNEFILP-AKATNAVERVKDIQIHKQLNGPLSQFGQRF 719 R+ ++ L P K + RV + + + Sbjct: 1155 RSGRNNKVRSACITLCGSDVIGLRTLSNPIDKIISRPVRVPSVDLK-----SPQVIQRHV 1209 Query: 720 WDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKTKLTDGAEVTLDT 779 L N R+T D Y P + ++ + +K ++ L Sbjct: 1210 NSFLVRAFGVFTEGANGGRLTQ-KVADYY--TPFEVKVINGKIEFVKDNSSNADPNDLLG 1266 Query: 780 LFKDKDRPGNRPF-HDWMSIADFQDFADQWFAAALGRPVELTVFDSPRDIPHHRKLTV-- 836 K + +D + V + ++I + R + Sbjct: 1267 DPKGTMYEKFNILCSKQLEPEVREDLMKLLSGTVYDDQIN-QVVKNAQEI-NERCYSELR 1324 Query: 837 --------TFEDG-------------QVLKIRFDQGMGYWRINFSSQWHYFDFRDDVSFQ 875 F G Q +++ + + + +W + + + ++ Sbjct: 1325 NKLIDYKTAFSGGGPITDKFRIKLKMQYIEVLYKRLLNFWATSRFTPNANMPV-NVLTLD 1383 Query: 876 LVKMAQACKEGNVANSEESWA 896 L + + +S S++ Sbjct: 1384 LNSNGKKDFFTPMTSSNPSYS 1404 >UniRef50_UPI0001BC7B8F putative helicase related protein n=1 Tax=Bacteroides sp. D2 RepID=UPI0001BC7B8F Length = 2100 Score = 312 bits (799), Expect = 3e-83, Method: Composition-based stats. Identities = 130/729 (17%), Positives = 255/729 (34%), Gaps = 120/729 (16%) Query: 14 PVYEVAFCNDCNEPHLLAR------DKKGKLVQWENKGGDEFSLQDEVPVEHDATEEKVE 67 P+ E++ C C E +A+ ++ G E D F L E++ + Sbjct: 456 PLLELSRCKHCGEYVAIAKINTSPGEENGTYQPLERDDSDMFDL----------EEDEED 505 Query: 68 KENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCSASGCGY- 126 + + + T ++ + + + L++N CS C Sbjct: 506 AVQKYGIIGLAKDDIATGDNNTSMMVEGKKLVPASAGSGAWHLVVNTQ---CSCPYCNSK 562 Query: 127 --RGMSGKQP-------------FRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGP 171 + ++ ++ F + P+VL + +S + + + Sbjct: 563 LAHKKNNEEEVTADATEEMESAYLQKFRTSADFISRQMAPSVLNQLEKGSSKDPAKIMLH 622 Query: 172 DSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANA 231 G++ I+F DSRQ A+ ++ E ER + ++ LS + + + Sbjct: 623 -----DGQQFISFADSRQLAAKATLKQNLEQERLWVYSTIFHALSKQKAESGTVQQEIDK 677 Query: 232 DLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWT 291 +L A A + + + +K QA Q+++ + A ++ S+ T Sbjct: 678 VSAELVALALKGDT-------DQLAEASKKIQALKAQMKKYFTWQE--IADLLMKSKYCT 728 Query: 292 EMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQG 351 + +R+ + Q + K G K L+ RP + ET G Sbjct: 729 VFCRQFVKRSGDSDELGQDGNIPK-------GVLEKYVHSLMVMYLSTRPASAAAPETMG 781 Query: 352 LVQVGYQGLEKIHKSPL--------HWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLD-- 401 L Y L+ I + ++ +DW L++ +D+ VR + L Sbjct: 782 LFHTHYPQLQDIALPEAVEAFNQVLDIESNRISQEDWHHLLQIFMDYTVRSNQSLFLKLS 841 Query: 402 --DELKNWIGSRFSS-----KFVRNP--ESKDPEDNQNRRW---------PQIRNGNVSH 443 + + + RF++ + ++ P E P ++ R+ P+++ G+V Sbjct: 842 NTNPIDIFACERFATEKPRRRPIKKPVVEVGKPSHSRIVRYLCGLIKREKPELKTGDVYR 901 Query: 444 RLAKLLMLGAG--FKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFS 501 + L ++ VNA ++ + W + RF L ++ F Sbjct: 902 QYFNQLAAVVDALWEDVNAPKNHLLEESVH--WNSSNQQFERDSNEATRFNL--ANLCFK 957 Query: 502 LITDAWICP----------VTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTM 551 L D ++C V + ++ FKG PYL + E + Sbjct: 958 LYEDVYLCDTNSDSSTRHTVCLRPIENYFKGFAPYLIGNEVVELSN------------DL 1005 Query: 552 PEIWKLDRSQEDYAE--GLAKARDWV-SHDPLIAQLR---SENVWTDINDRVVEGGFYYR 605 E+W++ E +E + K W +H L+ E V+ + + + + Sbjct: 1006 HEVWEVYPYYEGTSEEVTIEKVEAWAETHRSLLWNHHIWGKEGVFGNRLTEIHQVPNLFI 1065 Query: 606 TAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEW 665 AEH+AQ E +S + FK+ +N+L CSTTMEMGVD + + S + Sbjct: 1066 QAEHTAQVDKEVSRSLQSEFKDHAINILACSTTMEMGVDLGNLEVVMLSSVPPQP--SNY 1123 Query: 666 HLNDELVVR 674 R Sbjct: 1124 KQRAGRSGR 1132 >UniRef50_Q3M825 DEAD/DEAH box helicase-like n=1 Tax=Anabaena variabilis ATCC 29413 RepID=Q3M825_ANAVT Length = 2093 Score = 292 bits (747), Expect = 4e-77, Method: Composition-based stats. Identities = 119/752 (15%), Positives = 227/752 (30%), Gaps = 146/752 (19%) Query: 1 MYVNQRQNCD-CGSPVYEVAFCNDCNEPHLLARDKKG---KLVQWENKGGDE----FSLQ 52 +Y+N+++ CD C SPV E+ C C + + + + + N+G E ++L Sbjct: 543 LYLNEKRTCDDCNSPVLELGSCYQCGQAYAFTQINGVSKLEPLPRSNQGLRENDKIYTLT 602 Query: 53 DEVPVEHDATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLII 112 + EE E+E P + + + T + N + Sbjct: 603 SGLLDSITEEEEIGEEEQESSPTNTLIIRQRDGWIGLPTSV-TFTNKSSEPNEFYLAWHR 661 Query: 113 NDIE--------QVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDE 164 + + + CG R + Q R + + ++ ++ + + D+ Sbjct: 662 PRDKDAKDLSGCYLPRCAACGTRPIRA-QAINRFVAYTDEPLEAMIDSLFDLLPESQEDQ 720 Query: 165 GKEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTS 224 G R+L+TF+D RQ A A Q+ + R + + Q Sbjct: 721 GS---------ASKRKLLTFSDGRQDAAFFASDYQRTHTETVYRQIIWQAF------QEL 765 Query: 225 TAPNANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATI 284 + + +L + KQ + +P + S+ Sbjct: 766 NPDDDIVSINQLINKVKQQFLETS------IPHPDRDSRK-------------------- 799 Query: 285 LVSRTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRT 344 N L D + Y ++ LL REF R Sbjct: 800 ----------NYLSYYPDDEESLENYRDC--------QDSAEARAKELLLREFALPFNRR 841 Query: 345 NSLETQGLVQVGYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDEL 404 ++LE L + L L +E ++ + + FL V D +R + +D Sbjct: 842 STLEAYALFA-CHIELRDERLIELVAREFEISNAEAKIFLIVLTD-IIRRTGIVSIDGAS 899 Query: 405 KNW-------------IGSRFSSKFVRNPESKDPEDNQNRRWPQI------RNGNVSHRL 445 + + + + SK E E + + P + G VS Sbjct: 900 RYFPETGGVEGVRPEMVDIQGRSKNYLFLEKSPDEQKKFKDSPSFIPKWKQKTGEVSQVQ 959 Query: 446 AKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMT-FSLIT 504 +L N D K+ L +L+ N L + Sbjct: 960 NRLGWYYLQLFGDNLPNRDKFVALFKQL-----EQLRLLEKAKNGHQLNWTRLNIIKTQH 1014 Query: 505 DAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDY 564 D + C +I+ GL+ + + + Q Y Sbjct: 1015 DWYQCDRCQQIIHVP--GLSDVQKSQTKLNIFGCPAFKC-------------TGQLQPYY 1059 Query: 565 AEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKM 624 AE + + R+ + + + + R+ EH+AQ L+ E Sbjct: 1060 AEKIEQVRN---------EHYQQYIIKNR------LPLPLRSQEHTAQLGVTELERRENR 1104 Query: 625 FKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRS--------- 675 F+ GQ+N+L+CSTT+EMGVD + + R+ + + R Sbjct: 1105 FRRGQINLLSCSTTLEMGVDIGELQAVVLRNFPPHV--SNYQQRAGRAGRRTDGVAITLM 1162 Query: 676 -LGYKTVELNEFILPAKATNAVERVKDIQIHK 706 + + F P + ++ + Sbjct: 1163 YGQRRPHDRFYFEQPEQLIAGSNQIPKLDADN 1194 Score = 58.6 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 33/192 (17%), Positives = 59/192 (30%), Gaps = 17/192 (8%) Query: 666 HLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWD-VLF 724 H + RS F + V+ I++ + F R W + Sbjct: 1893 HQQEWFETRSGEG---VDTVFQRLQNLRSQARPVEAIEL--EDPNTTVIFPDRTWSNLTI 1947 Query: 725 NDHEEAQSLMN--NTRITGVHYTDRYLQNPVALALLGSILRPLKTKLTDGAEVTLDTLFK 782 + + + + Y DRYL G IL L ++ Sbjct: 1948 TQLRQRLGIDRVFSGGGVKIVYRDRYLNEKG-----GKILADLLQGDGINENSSVTIWVL 2002 Query: 783 DKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVELTVFDSPRDIPHHRKLTVTFEDGQ 842 + + A+ + Q + V++ + PH R++ V +GQ Sbjct: 2003 EDYKGELGS----QRKANLEAALTQIQRMGVSTTVKVQPWYERSYFPHSREMEVLTANGQ 2058 Query: 843 VLKIRFDQGMGY 854 KI FD+GM + Sbjct: 2059 RYKIMFDKGMDF 2070 >UniRef50_B4VWS3 Type III restriction enzyme, res subunit family n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VWS3_9CYAN Length = 2104 Score = 289 bits (738), Expect = 4e-76, Method: Composition-based stats. Identities = 113/804 (14%), Positives = 229/804 (28%), Gaps = 161/804 (20%) Query: 1 MYVNQRQNCD-CGSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEH 59 +Y+N + CD C SPV E+ C+ C + + + +Q + + Sbjct: 543 LYLNSKTTCDDCHSPVLELGSCSQCGQAYTFTQLNNSGELQPLPRATARLRDNPRIYTLT 602 Query: 60 DATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQV- 118 + + +E+ + S++ TL L ++ IG + +S P + + Sbjct: 603 SGNLDSITEEDDIGETE---SEPPSDSPKTLTILAQRDGWIGSPSPESFPPTVTGTGKFH 659 Query: 119 -----------------CSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFT 161 + CG+R + Q R + + ++ ++ E + Sbjct: 660 LAWHRQKGDKNLDGCYLPKCAACGFRSIRA-QAINRFVAYTDEPLEAMIDSLFELLPESK 718 Query: 162 SDEGKEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRT 221 P R+L+TF+D RQ A A Q+ R + L Sbjct: 719 ---------PSPESASKRKLLTFSDGRQDAAFFASDYQRNHTEKLYRQMLYSAL------ 763 Query: 222 QTSTAPNANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKA 281 Q + A + +++ + + +++ + +P + SQ Sbjct: 764 QEVKDADGVASVNQVSHKLR------DKFLNISIPHPDRNSQ------------------ 799 Query: 282 ATILVSRTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRP 341 +N L Q + ++ +L REF Sbjct: 800 ------------LNYLSYVPGDETQERQSKRDCQDR-------AESRAKEILLREFALPF 840 Query: 342 KRTNSLETQGLVQVGYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLD 401 R ++LE+ G++ + LE ++ + FL LD +R + +D Sbjct: 841 ARRSALESFGILA-CHVELEDERLIRSVADRFHISDTEAEIFLIGLLD-IIRRTGIVSID 898 Query: 402 DELKNW-------------IGSRFSSKFVRNPESKDPEDNQNRRWPQI-----RNGNVSH 443 + + I ++ SK E E + + P ++G VS Sbjct: 899 GASQYFPETGGVQGGRREMIDAQGRSKNYLFLEKSADEMKKYKDSPAFMPKWKKDGTVSK 958 Query: 444 RLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLI 503 +L + ++ +L ++L + Sbjct: 959 VQNRLGWYYFQIFGEGFPQKEDFVWLFEQL-----KSFGLLVNAQKGYHLNWNLLNIIET 1013 Query: 504 TDAW-ICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQE 562 W C +I P L + L + TF P + Sbjct: 1014 EQDWHQCDRCQQIFHV------PGLSESLEP-TLNIKGCPTFKCSGQLQPYQPEKI---- 1062 Query: 563 DYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYE 622 + + + + + R+ EH+AQ L+ E Sbjct: 1063 ---------------KQAANEHYLQYLIKN------QPPLPLRSQEHTAQLGVGELEKRE 1101 Query: 623 KMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRS------- 675 F+ GQ+N+L+CSTT+EMGVD + + R+ + + R Sbjct: 1102 NRFRRGQINLLSCSTTLEMGVDIGELQAVVLRNFPPHV--SNYQQRAGRAGRRTDGVAIT 1159 Query: 676 ---LGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHE---- 728 + + F P + ++ + H Sbjct: 1160 LMYGQRRPHDRFYFEQPEQLIAGSNQIPKLD-ANNFQIQQRHIRAELLADFLKSHGVGAE 1218 Query: 729 -----EAQSLMNNTRITGVHYTDR 747 + L N + + Sbjct: 1219 EVKIADFFDLPQNYTVASTDFQPP 1242 Score = 76.4 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 9/118 (7%) Query: 737 TRITGVHYTDRYLQNPVALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWM 796 +++ V Y DRYL A L +L+ L+D ++VT+ TL + + Sbjct: 1972 SQVKQVFYRDRYLNGQRA-KFLAELLQG--EGLSDNSQVTILTLETSQSPSASEL----- 2023 Query: 797 SIADFQDFADQWFAAALGRPVELTVFDSPRDIPHHRKLTVTFEDGQVLKIRFDQGMGY 854 A+ + A + V + D PH R+L + D Q K+ FD+G+ + Sbjct: 2024 -KAELEAALIGLKAIEIQPKVTVQPRHRRSDFPHARELEIQGHDQQKYKVIFDRGLDF 2080 >UniRef50_Q0B058 Putative helicase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0B058_SYNWW Length = 1878 Score = 283 bits (724), Expect = 1e-74, Method: Composition-based stats. Identities = 98/789 (12%), Positives = 218/789 (27%), Gaps = 102/789 (12%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHD 60 ++ R C CG V ++ C C E L ++ + N E D+ +E Sbjct: 567 LHFRHRLTCTCGGRVLDLIVCEVCGEVFLGGY----RVSRKINSTRFEILTSDQPDLEKM 622 Query: 61 ATEEKV----EKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIE 116 + V EK F P + + Y + + + + G +N S L ++ Sbjct: 623 PDQTSVLKTYEKYAVFWPIQKGTEVKPEDEQYQVNNI-VRRWKAGRLNVFSGVLRQDNKA 681 Query: 117 QVCSASGC------GYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGK---- 166 + G G P + G + + + + F Sbjct: 682 PDDNEVGGWIYVIGGDNPNEPSLPTKCPRCGADYRSKMVSSPLRNHRTGFQKACQVLASA 741 Query: 167 --EGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTS 224 + P + R+L+ F+DSRQ +A++A M+Q+ R +R ++++ +S + + Sbjct: 742 LFREMNPFTDNQSFRKLVVFSDSRQDSAKLAAGMEQDHFRDMIRLALLQAISKYWMEFAA 801 Query: 225 TAPNANADLEKLAARAKQAREQAEE--YRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAA 282 + ++A + ++ + D+ + Q ++ + Sbjct: 802 FWRTTVKVMPQVAHKIQEINPELYSTVIEPQKTEDEVHRYRFQKSHIQMMSEIMNWSLGM 861 Query: 283 TILVSRTWTEMVNELKERAD--IRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRR 340 + M+ +K + + + GG +E R Sbjct: 862 NPTNLDVYNTMLKMIKFYPGKVPLFELRGVIREIMLGLGMNPGGNEYRVNTYYVQEGGRG 921 Query: 341 PKRTNSLETQGLVQVGYQGLEKIHKSPLHWQEKGLTLDD---WRDFLKVTLDHYVRESNF 397 + + + L L D + + V H R F Sbjct: 922 KPHAWH-----ECYNWNSSEAQEKAQLVPEARRLLGLMDNCLAEEVMHVLFPHVAR--TF 974 Query: 398 TQLDDELKNWIGSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKT 457 L + + ++ + + R+ + + G + KL + + + Sbjct: 975 EGLGQGWVTYEETTNATDLIIQATNSAIRLLGGRKTHRYQRGYKAGSETKLPRYVSNYLS 1034 Query: 458 VNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHM-TFSLITDAWICPVTNKIL 516 V + + T + + G L+ L D + YL H W C N Sbjct: 1035 VIGVSAAEVETEMVHS-KAGMGGLSSLGLDPDYLYLNLSHFDHEETRPQGWRCVTCNAFY 1093 Query: 517 DTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVS 576 G P + L + + + + SQ A Sbjct: 1094 LQPAGGFCPECASQRQSHRLVPSN-------PQSHLDYYLYLASQSGPA----------- 1135 Query: 577 HDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKN--------- 627 F E + Q ++ F++ Sbjct: 1136 -------------------------FRMHCEELTGQTDYIDRIRRQRWFQDVFVEDEIPL 1170 Query: 628 -GQLNVLNCSTTMEMGVDTDRVMTLASRSQQAT--------IPGPEWHLNDELVVRSLGY 678 +++L+ +TTME GVD ++ + + + + Sbjct: 1171 VHGVDLLSVTTTMEAGVDIGPLLAVMMANMPPRRFNYQQRVGRAGRRGSGLSIALTFCRG 1230 Query: 679 KTVELNEFILPAKATNAVERVKDIQIHKQ----LNGPLSQFGQRFWDVLFNDHEEAQSLM 734 ++ + + P + T + + ++ + F + + Sbjct: 1231 RSHDDYYYERPEQVTGDPPPLPYVDMNNEKIIRRVLIKEVLRMAFRSLPDDIFPPDPRDS 1290 Query: 735 NNTRITGVH 743 + V Sbjct: 1291 VHGEFGSVE 1299 >UniRef50_B1L4S0 DEAD/DEAH box helicase domain protein n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L4S0_KORCO Length = 1610 Score = 281 bits (718), Expect = 8e-74, Method: Composition-based stats. Identities = 130/880 (14%), Positives = 245/880 (27%), Gaps = 182/880 (20%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHD 60 +++ +R+ D G PV+E+A C C + +L+ +GKL + + + + D Sbjct: 494 IFLERRELTDDGYPVFELASCRRCGQEYLVGEVVEGKLKHSFAEVDTQRKNRYFMLWGED 553 Query: 61 ATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINN-DSIPLIINDIEQVC 119 ++ E + P I G+ + + + + DS+ +I + Sbjct: 554 IKLKEDEDQEVAVPEEIAKEGDVWKLCVKCGSIWKDKPTCNCDHERDSVRTLIEVTPKDT 613 Query: 120 SASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGR 179 + C G+ R + + + + + E R Sbjct: 614 VLNKCYLCGLRSIDIVREFIFQRDAPAAVLTTALYQNLPRDHARE--------------R 659 Query: 180 RLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAAR 239 +++ F+DSRQ A A ++ +R R +VE + R + + D+ +L + Sbjct: 660 KILIFSDSRQDAAFFAPYLEFTYKRILFRRLIVEAIKG-NRLEDYRLESLCEDVLRLGEK 718 Query: 240 AKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKE 299 +K D AK + + ++ W ++ E Sbjct: 719 SKVF-------------DPAKDEKERKKE--------------------VWKWIIQEFCG 745 Query: 300 RADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQG 359 D R + L +L RP Sbjct: 746 IWDRRNSLEGVG----------------LVSFILIFPENWRP------------------ 771 Query: 360 LEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDD---ELKNWIGSRFSSKF 416 ++++ + P W LT D+ R + L+ +R + D + R Sbjct: 772 IKELQEPP--W---NLTEDEARALYQTLLN-SMRFNMAITFPDGLNSQDEFFSPRNREYK 825 Query: 417 VRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQ 476 R S + Q R L KL G + N + L + W Sbjct: 826 FRGEGSDTGRGIYSFIPSQGRTNARLEYLEKLYKKITGKEDEN----NECRELLGKIWED 881 Query: 477 LTGPLA-------VLKPDGNRFYLPKEHMTFSLITDAW-ICPVTNKILDTAFKGLTPYLP 528 L DG + L + +W IC I+ ++ +G+ P Sbjct: 882 LRDNWVDRGIQRFSNSRDGVLYKLDYRYWRIIQPNTSWFICDRCGVIVPSSVRGVCP--- 938 Query: 529 THISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSEN 588 TF +P + L + Sbjct: 939 --------------TFGCNGNLIP-----------------------IDNQKFEDLERNH 961 Query: 589 VWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRV 648 EH+AQ +++ + ++ F G +N+L+CSTT E+GVD + Sbjct: 962 Y---RYLYTHLEPIVMAPHEHTAQLTTDHASNIQQKFIRGDINILSCSTTFELGVDIGEL 1018 Query: 649 MTLASRSQQATIPGPEWHLNDELVVRS----------LGYKTVELNEFILPAKATNAVER 698 + R+ + R ++ +L F P K + Sbjct: 1019 EAIFLRNVPPEP--SNYIQRAGRAGRRLGTIGFILTFAQLRSHDLAYFKEPEKMIEGRIK 1076 Query: 699 VKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMN----NTRITGVHYTDRYLQNPVA 754 I++ + + D + + I+G YL Sbjct: 1077 PPIIELKNEKIISRHLYSIAIADFFRKFSDYFGDADSFFRFEEGISGTERIKEYLLTKPE 1136 Query: 755 LALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALG 814 SIL+ LK +D DW + A Sbjct: 1137 -----SILKSLKRV-------------IPEDLQKVFGVDDWKWVDGLVGKEGVLTKADEK 1178 Query: 815 RPVELTVFDSPRDIPHHRKLTVTFEDGQVLKIRFDQGMGY 854 E T + + + + KI D Y Sbjct: 1179 IRDEFTRLKEFYRLKEEEWNSAQ-DQQKRNKIHADMNWAY 1217 >UniRef50_Q2SCB8 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SCB8_HAHCH Length = 1891 Score = 265 bits (675), Expect = 8e-69, Method: Composition-based stats. Identities = 107/673 (15%), Positives = 194/673 (28%), Gaps = 143/673 (21%) Query: 16 YEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHDATEEKVEKENSFQPP 75 Y + C C +P++ KL + E ++ ++++ + Sbjct: 443 YPLLTCRQCGQPYIEGYHYNSKLHNRYPSASATAHRRIFWLGEP-SSNAIFDEDDEAEQS 501 Query: 76 LIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCSASGCGYRGMSGKQPF 135 T L+ R+ + + C+A G + + Sbjct: 502 AEQQWRSLHIDPLTGNILNEGGVRLFELKTEEDEFDRTHYLTHCAACNATASGSNA-EII 560 Query: 136 RRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQGTARMA 195 R G + I VLE + ++ P GR+L+TF+D+RQ A A Sbjct: 561 SRFYPGNEALSSVITQCVLEALPPQSLNQ---------RPAAGRKLLTFSDNRQDAAFFA 611 Query: 196 VRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARAKQAREQAEEYRSWGM 255 ++ A R ++VE L Sbjct: 612 PYFERTANDFAHRSAIVEALRADSAPVPLDT----------------------------- 642 Query: 256 PDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERADIRGPVLQYNHYLK 315 A +A ++ D G + Y +K Sbjct: 643 --LANKVRALWDKRNCFA--------------------------YPDANGDLRDYFDDVK 674 Query: 316 PEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGLEKIHKSPLHWQEK-- 373 + + L EF P R SLE+ GLV++ Y+ EK+ + ++ Sbjct: 675 DILTGK-----------LGAEFCTPPGRRVSLESLGLVEISYKD-EKLDRVIRGLLKEFD 722 Query: 374 GLTLDDWRDFLKVTLDHYVRESNFTQLDDELK----NWIGSRFSSKFVRNPESKDPEDNQ 429 G++ +D R + L+H R T + + G R+ ++ E + Sbjct: 723 GISKEDIRSLCLIFLEHIRRSKAITNMPNNPDMNSAAIWGERY--TGIKLFEYEKSGSEV 780 Query: 430 NRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGN 489 W ++R L G+ + +LK W LT VL G Sbjct: 781 THSWTTQLGSTRNNRRTWYLTKQLGWTKERS------QAFLKSMWMLLT-KSKVLVSSGA 833 Query: 490 RFYLPKEHMTFS--LITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQ 547 L + S + C G E ++ + Sbjct: 834 GKALDASLILLSDGGKKSLFKCNSCGLRQRHVVNGKCTSFGCTGEVEVCNPKEFSS---- 889 Query: 548 KVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTA 607 + + +T+I +VV R+ Sbjct: 890 ----------------------------------ERNHYIHSYTEIQSQVV------RSR 909 Query: 608 EHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHL 667 EH+A S+E + E F + ++NVL+C+TTME+GVD + + + + I + Sbjct: 910 EHTASLSTELREFIESEFFDSKINVLSCTTTMEVGVDLGDLEAVVNLNVPPGI--ANYQQ 967 Query: 668 NDELVVRSLGYKT 680 R Sbjct: 968 RTGRAGRRAQAAP 980 >UniRef50_UPI00017895CA DEAD/DEAH box helicase domain protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017895CA Length = 1759 Score = 262 bits (667), Expect = 6e-68, Method: Composition-based stats. Identities = 101/742 (13%), Positives = 204/742 (27%), Gaps = 154/742 (20%) Query: 1 MYVNQ-RQNCD-CGSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVE 58 +Y R CD CGS VYE+ C L + E EF + Sbjct: 554 LYFGSVRDTCDSCGSKVYELLNDRRCGALFLKGY------MYQEPFNAREFVWNSIGELY 607 Query: 59 HDATEE----KVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIIND 114 + +E + +EN + G L D + G ++ P + Sbjct: 608 DENCKEVHFYIISEENYKKTTKETKVGWLHAPTGRLFIDDSYANKQGFLHVAYNPKELKG 667 Query: 115 IEQ---VCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGP 171 S C ++ + N+V L D Sbjct: 668 KPGKLTFDSCPKCSKAKLNPSDFVTKGNES----FYNLVSEQLSIQPPTIFDN----DLI 719 Query: 172 DSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANA 231 LP GR+++ F+DSRQ A +A + + A+ R ++V + ++ + Sbjct: 720 RKLPNAGRKVLLFSDSRQRAAGLAKDLTRAADDVAARKAMVIAVQNLEKWAAAQNRQPTM 779 Query: 232 DLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWT 291 ++ +A + EQL + + + + Sbjct: 780 NILYVAFLEVAVTHNLHLFYGDQKKSLVNDMNKVREQLRRNERRN---------KAMNYE 830 Query: 292 EMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQG 351 + + + +L +++ SL G Sbjct: 831 TLKADFNTTPGLYD--------------------EQLLKLMCSSY--------RSLSDIG 862 Query: 352 LVQVGYQGLEKIHKSPLHWQEKGLTL--DDWRDFLKVTLDHYVRESNFTQLDDELKNWIG 409 L + +KI + + + L D++ + +++S Sbjct: 863 LCYIKPCSEDKIDEVLDELDDNNINLSVDEFESIFASWANFVMKDSYAL----------- 911 Query: 410 SRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTW 469 + + ++ R+ NG +S + ++L + + INT Sbjct: 912 ----GDTISDEVRENARPTSYGRFGIPANGKLSGGILRVL-------IEQGYSPEEINTI 960 Query: 470 LKEAWAQLTGPLAVLKPDGNRF-YLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLP 528 + L A + N + + +T++ + + C + G + Sbjct: 961 ----YKCLLKYTATPQGSENSYLNMNMLTLTYNNSHEWYHCKKCAGVFARTLWGKCAHCG 1016 Query: 529 THISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSEN 588 +T + F + + EI + Q + Sbjct: 1017 DS-QVAQMTKEDFRRFDFWRKPVIEIIESSTPQPITSIN--------------------- 1054 Query: 589 VWTDINDRVVEGGFYYRTAEHSAQQSSERL--------QSYEKMFKNGQLN------VLN 634 T EH+AQ S + + YE F++ Q+N +L+ Sbjct: 1055 -----------------TEEHTAQLSHKDQRQKMWSTTEDYEMRFQDVQVNDDTPVDILS 1097 Query: 635 CSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLG----------YKTVELN 684 C+TTME+G+D + + R+ + R + Sbjct: 1098 CTTTMEVGIDIGSLTAVGLRNIPP--MRENYQQRAGRAGRRSSAISTIVTYTDNGPHDTF 1155 Query: 685 EFILPAKATNAVERVKDIQIHK 706 F P + R I + Sbjct: 1156 YFNHPEEIIAGEVRKPWIDVKN 1177 >UniRef50_B0K504 DEAD/DEAH box helicase domain protein n=9 Tax=Bacteria RepID=B0K504_THEPX Length = 1607 Score = 260 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 113/738 (15%), Positives = 217/738 (29%), Gaps = 168/738 (22%) Query: 13 SPVYEVAFCNDCNEPHLLAR--DKKGKLV---QWENKGGDEFSLQDEVPVEHD---ATEE 64 V+E+A C+ CN +L+ +K GK +E +L+ + +E E Sbjct: 503 YKVFEIATCSRCNSIYLVGEIKEKDGKKFLYQPGSRYYENEANLEYFLLIEDKGLVPDNE 562 Query: 65 KVEKENSFQPPLIIA------------AGETSEAGYTLQRLDRQTRRIGVINNDSIPLII 112 + I +E G D R+ + + L Sbjct: 563 DEIVLAGGENEFIFKEEEWVLCGKCGAIKPVNELGDLCGCGDEYKIRLIRSSTKNGMLH- 621 Query: 113 NDIEQVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPD 172 CG +G RR LLG + + + ++ D ++ +E Sbjct: 622 -------KCPACGAINTTG-TVARRFLLGHEAATSVLATALYQHIPDRKEEKVEEEDDEW 673 Query: 173 SLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANAD 232 S + T++R R + ++ D Sbjct: 674 STADNNENF-SVTNNR-------------------RMLIFS--------------DSRQD 699 Query: 233 LEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTE 292 A + + Q + R M E+ ++ + Sbjct: 700 AAFFATYLQSSYNQILQRRLIIM---------TLERYKEKVIKNEWRV----------ED 740 Query: 293 MVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGL 352 +V ++ + + N + + + K EF+ R TN LE+ GL Sbjct: 741 LVEY------VKKMLKELNLFPELSLQQLEEEAWKWV----LYEFLGRGGETN-LESLGL 789 Query: 353 VQVGYQGLEKIHKSPLHWQEKGLTLDDWRD--FLKVTLDHYVRESNFTQLDDELKNWIGS 410 + L + P E + L + + V LD +R++ D + + Sbjct: 790 LGFE-PILPENWHPPKALTEGYINLTEREATELIMVLLD-TMRKNGAVLFPDSV-SLQDE 846 Query: 411 RFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWL 470 F K+ ++ W +G + RL ++ L A ++ I +L Sbjct: 847 FFKPLNREFYFKKEAKEPNKYSWVPASSGRTNSRLDFMMRLAAAKGQE--VDVEKIKDFL 904 Query: 471 KEAWAQL--------TGPLAVLKPDGNRFYLPKEHMTFSLITD---AWICPVTNKILDTA 519 W +L + +G R L + ++I + C N++ Sbjct: 905 ARIWEKLLISDKSPFRRYFSGSPQEGYRLNLRYWRVVPAVIDKSVKWYKCSKCNRLSLHN 964 Query: 520 FKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDP 579 G+ P E D Sbjct: 965 VGGVCPNYRCDGHLEECNP---------------------------------------DD 985 Query: 580 LIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTM 639 + ++ DI +++EH+AQ ++E + +K F G++NVL+CSTT Sbjct: 986 ELKDHHYRKLYLDI------LPLTLKSSEHTAQLTTEEAGNIQKKFYEGEINVLSCSTTF 1039 Query: 640 EMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRS----------LGYKTVELNEFILP 689 E+GVD + T+ R+ T + R ++ + F+ P Sbjct: 1040 ELGVDVGELETVFMRNVPPTP--ANYIQRAGRAGRRTSSTAFVLTFAQRRSHDFTHFVNP 1097 Query: 690 AKATNAVERVKDIQIHKQ 707 N + I+I + Sbjct: 1098 LNIVNGKIQTPHIEITNE 1115 >UniRef50_A9B5T9 Helicase superfamily 1 and 2 ATP-binding n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B5T9_HERA2 Length = 1784 Score = 259 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 112/792 (14%), Positives = 214/792 (27%), Gaps = 163/792 (20%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLA--RDKKGKLVQWENKGGDEFSLQDEV--- 55 +Y C CGS V E+ C C L D + + E + D Sbjct: 558 LYATPTIWCGCGSRVLELMSCRVCGLAFLGGIPEDPHEQRLWPYPNDDLERIVADSRGYQ 617 Query: 56 --PVEHDATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIIN 113 +E+ +++ + + + ++G E + + QT I +S+ L Sbjct: 618 VFALENPNPDKQPQADWQLNYRSVKSSGLCRETDADARMVWEQTETIKQKKTESMRLPRA 677 Query: 114 DIEQVCSASGCGYRGMSGKQP-FRRALLGGPFY--------VTNIVPTVLEYCQDFTSDE 164 + + P F L+ F +I ++E F + Sbjct: 678 CPRCIYPSDRGVAEAFRTLTPQFFAVLMEHAFRIQPPRDQKSQSIPTPIVENKWSFRRVQ 737 Query: 165 GKEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTS 224 S P RGR+L+TF+D RQ AR+ + + R R V+++L Q T Sbjct: 738 PTVVTSTQSNPNRGRKLLTFSDGRQTAARLVGTLNFQRTRDLFRQIVMKLLDQQQLTN-- 795 Query: 225 TAPNANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATI 284 PDQ E + + Sbjct: 796 -------------------------------PDQPYALTNLREAILN-FCIDHAIDPTFG 823 Query: 285 LVSRTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPK-R 343 W + +L+ +L F R R Sbjct: 824 EKDGFWNTLQQ-------------------------NREEAKRLARPVLDDYFRRELADR 858 Query: 344 TNSLETQGLVQVGYQGLEKIHKSPLHWQEKGLTL-----DDWRDFLKVTLDHYVRESNFT 398 +E GL + +E G TL + + + + E+ Sbjct: 859 QIGVEALGLARWV-PLDSAEKDIRQDIRESGSTLTGFDTEQTIGIITSIVRILLGENMIL 917 Query: 399 QLDDELKNWIGSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTV 458 + ++W + R ++ + + G +R+ + L + Sbjct: 918 PASADPRDWDQALIEYWERRTVVNQGALKSPQTLF--WNAGENDNRITRYLRAV--IASS 973 Query: 459 NAATIDIINTWLKEAWAQLTGPLAVLKP----DGNRFYLP-KEHMTFSLITDAWICPVTN 513 N ++ + E W LTG + +L+P F + L T + C Sbjct: 974 NQTAGITLSQLMHELWDALTG-MGILRPVQGVTQPGFAISIASLGLLLLTTTMYQCRACR 1032 Query: 514 KILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARD 573 + + G+ L + + TL Sbjct: 1033 YLSAESIFGVC--LRCQNTMDECTLTD--------------------------------- 1057 Query: 574 WVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKN------ 627 R + + F EH+AQ S ++ E+ FK+ Sbjct: 1058 --VEQQEGNYYRKLVDYARNQSSMFADPFPLHVMEHTAQISRKQASDRERHFKDQFIPLY 1115 Query: 628 ---------------GQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELV 672 ++++L+ +TTMEMG+D + + + T+ + Sbjct: 1116 TPSGAVNDRGEHPQAHRVDMLSVTTTMEMGIDIGDLTVVGLHNMPPTV--ANYQQRAGRA 1173 Query: 673 VRS----------LGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDV 722 R ++ + F A+ ++ I I L Sbjct: 1174 GRRSDGVAAVLTFARDRSHDQYYFREVAQIITGAVKLPIIPIDN-LVIAQRHIYALVLQQ 1232 Query: 723 LFNDHEEAQSLM 734 F+ + + Sbjct: 1233 FFHQMQGVSDNL 1244 >UniRef50_Q2JN13 Putative helicase n=1 Tax=Synechococcus sp. JA-2-3B'a(2-13) RepID=Q2JN13_SYNJB Length = 1878 Score = 257 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 95/749 (12%), Positives = 214/749 (28%), Gaps = 112/749 (14%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLAR--DKKGKLVQWENKGGDEFSLQDEVPVE 58 ++ R +CDCG+ V ++ C C E L L+ D+ +E Sbjct: 574 LHSQHRLSCDCGARVLDLIVCEVCGEVFLGGYAYQSGESLILTP----------DQPDLE 623 Query: 59 HDATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRR---------IGVINNDSIP 109 + + + + Q L+ + + + Sbjct: 624 GIPDLVNLTQRSGNYRVFWPLPHDPEPWATQPQYLEWTAGKTKRGWVEAKLNPATGELRQ 683 Query: 110 LIINDIEQVCSASGCGYRGMSGKQP---FRRALLGGPFYVTNIVPTVLEYCQDFTSD--E 164 E + G QP R + PT L + + Sbjct: 684 DKSPPREGEVPGWVYQVKEGDGNQPALPSRCPRCDTDRALREAYPTPLRVHRTGFQKACQ 743 Query: 165 GKEGVGPDSLPG-RGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQT 223 G +P + R+L+ F+DSRQ A++A M+ + R +R +V +++ Sbjct: 744 VIAGALLREMPTPQSRKLVVFSDSRQDAAKLAAGMEMDHYRDMVRLLLVRSAEEYRQDLR 803 Query: 224 S----TAPNANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGG 279 + P+ ++L + ++ W D+ Q + +A Sbjct: 804 AFLRCELPSPEERQQRLREYPRLLQDVEGMAEDWAARDR--FLNRQGDIATEALLWTQNR 861 Query: 280 KAATILVSRTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMR 339 + A V W EM+ + + P+L L + + P +S L+ + Sbjct: 862 RPANEQVRELWLEML----KSYGEKVPLLALRRTLADLLLHLGLCPGGMSFSALY-YSVN 916 Query: 340 RPKRTNSLETQGLVQVGYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQ 399 + + + ++ + + + E+ LD+ +L + + Sbjct: 917 KDRHPWT-------ELYNWQSQPVTRIAARTPEQNRHLDELDAYLADEMMFTLFAHAVRN 969 Query: 400 LDDELKNWIGSRFSSKF--VRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKT 457 ++ + ++ ++ + V + + + R+ + L + + K Sbjct: 970 IESFGQGYVTAQVPPELQDVASAVIRQLGIRKRHRYSKFCRPGTRRELPQYVERYLR-KL 1028 Query: 458 VNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLIT----DAWICPVTN 513 D+ + +E + N L + + ++ + CP Sbjct: 1029 EEQGKPDLKSQIEREL-------NKIGTRSENGLVLDPDRLYLVPVSREGLQGYRCPQCG 1081 Query: 514 KILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARD 573 G P + + + + + DY L+ + Sbjct: 1082 AFYLHTAGGWCP---------ECSGGRNTSKRSDPQAIRLQPSSLPRDLDYYAYLSDPEN 1132 Query: 574 WVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERL----QSYEKMFKNGQ 629 F AE + Q E + ++++F G+ Sbjct: 1133 --------------------------EPFRMNAAELTGQTDKEDRLKRQRWFQEVFLEGE 1166 Query: 630 L------NVLNCSTTMEMGVDTDRVMTLASRSQQAT--------IPGPEWHLNDELVVRS 675 + ++L+ +TTME GVD ++ + + L V Sbjct: 1167 IPLAQGIDLLSVTTTMEAGVDIGGLLAVMMANMPPRRFNYQQRVGRAGRRGAGVSLAVTF 1226 Query: 676 LGYKTVELNEFILPAKATNAVERVKDIQI 704 ++ + F P T I + Sbjct: 1227 CRGRSHDDFYFQRPEAITGDPPPPPYIDL 1255 >UniRef50_Q8NSE5 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster n=1 Tax=Corynebacterium glutamicum RepID=Q8NSE5_CORGL Length = 1600 Score = 255 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 122/838 (14%), Positives = 226/838 (26%), Gaps = 161/838 (19%) Query: 13 SPVYEVAFCNDCNEPHLLARDKKGKLVQWENK-GGDEFSLQDEVPVEHDATEEKVEKENS 71 P+YE+ C C H+ A + G LV EN DE L+ V + T + E + Sbjct: 507 RPMYEMGACIKCGTVHISAHNDSGFLVPPENSSNFDEQQLKWVVLTDDFETADIDEDDLE 566 Query: 72 FQPPLIIAAGETSEAGYTLQRLDRQTRRI--GVINNDSIPLIINDIEQV----CSASGCG 125 + E + +L+ + + G ++ + + +E + + CG Sbjct: 567 TDADENVKVLELQKLCTACGKLNGKNSLLCSGCSSHHDQFIDVKILEPRNGSQLTCTRCG 626 Query: 126 YRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLITFT 185 R + RR + + ++ + + + +G GR+L+TF+ Sbjct: 627 GREKN---LIRRLRTDSNAAPSVLTTSLFQLLPESADQDTSRKIGA------GRKLLTFS 677 Query: 186 DSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARAKQARE 245 DSRQ A A +Q R R ++E L + T+ A +E+ +RA + + Sbjct: 678 DSRQAAAYAAPYLQASYTRLLERRILIETLRDEEFTE-------GASIERWISRASEVAK 730 Query: 246 QAEEYRSWGMPDQAKLSQAQA--EQLEQAYQAATGGKAATILVSRTWTEMVNELKERADI 303 + P + L + ++ + T + Sbjct: 731 NNRVLANNLNPRETLEQTGNWVFADLASTVRRSSTEGLGLAKIELTPEALSQL------- 783 Query: 304 RGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGLEKI 363 E+F + + +EF + + Y LE Sbjct: 784 ------SFRKPLGEMFGDPDAADAFFNLF-AQEFRHKG---------AINCPDYVNLEDE 827 Query: 364 HKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVRNPESK 423 P R D G R S++ + Sbjct: 828 RFGP-------------------------RRGQHFFTKD------GGRKSTRRLY----- 851 Query: 424 DPEDNQNRRW-PQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGP-- 480 W PQ N + K+L + I T L W T Sbjct: 852 --------SWIPQRGTNNRKDFITKVLNRIGQAGDEG----ENITTLLHHLWNDYTNSEI 899 Query: 481 LAVLKPDGNRFYLPKEHMTFSLITD--AWICPVTNKILDTAFKGLTPYLPTHISFEHLTL 538 L V + L + S + C GL P+ F L Sbjct: 900 LKVPGEKAEGYTLNYNSLQVSPGKQHSWYECDTCRNTTPFNVLGLCPH-----GFCKGKL 954 Query: 539 AQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVV 598 + DT + + + N + + + Sbjct: 955 KEIDTSLPE-------------------------------------YANNHYRKLATSLE 977 Query: 599 EGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQA 658 EH+AQ + +K F G++NVL+CSTT E+GVD + ++ R+ Sbjct: 978 ILP--LSAKEHTAQWTPTEAAEVQKEFIEGKINVLSCSTTFELGVDVGDLQSVMMRNVPP 1035 Query: 659 TIPGPEWHLNDELVVRS----------LGYKTVELNEFILPAKATNAVERVKDIQIHKQL 708 + R + +L F P + + V + I+ Sbjct: 1036 --RTANYVQRAGRAGRRSGSAAFVLTFAKRSSHDLAVFKNPTQMIDGEMTVPFLHINNAR 1093 Query: 709 NGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKTK 768 + + + YL+ VA IL + Sbjct: 1094 IARRHTYSIALAAFFREQAAQNRFWKKAGEFFLGTDAAPYLRPAVAEQEATEIL----EE 1149 Query: 769 LTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVELTVFDSPR 826 + + D + + F + + + + Sbjct: 1150 FLSPVPNYITEALRRVFPESLHEDLDIENQGWVKQFLEIFDTTRQEISEDFQTLKKMQ 1207 >UniRef50_D1WRW1 Serine/threonine protein kinase n=3 Tax=Streptomyces RepID=D1WRW1_9ACTO Length = 2112 Score = 254 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 118/857 (13%), Positives = 225/857 (26%), Gaps = 128/857 (14%) Query: 12 GSPVYEVAFCNDCNEPHLLAR--DKKGKLVQWENKGGDEFSLQDEVPVEHDATEEKVEKE 69 G + +AFC +C + +L +K G++ + ++ ++ Sbjct: 794 GHALMPLAFCRECGQDYLTVWRTEKDGEIRYEPRRD----AVATGGRAGDGYLYIDTDRF 849 Query: 70 NSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCSASGCGYRGM 129 P TSE +RL I + + +++ A G Sbjct: 850 PGSSPWP-----PTSEEAIADRRLPESWLEIDDRGQEVVKKSY--RDRLPRAVTVDPYGN 902 Query: 130 SGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQ 189 G+ A + PF +C + I++ +R Sbjct: 903 EGRGELHAAFIPAPFL----------FCPQCS--------------------ISYEQTRG 932 Query: 190 GTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARAKQAREQAEE 249 + QE R S ++S + P A E Q Sbjct: 933 KDFAKLATLDQEG-----RSSATSLISASVVRSLDSVPEAALPKEARKLLTFVDNRQDAS 987 Query: 250 YRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERADIRGPVLQ 309 ++ D ++++ + A A G E+ + + V Sbjct: 988 LQAGHFNDFVQVTELRGALYRAALDAGQEG--------IPHEELATRVANALALHPAVYT 1039 Query: 310 YNHYLKPEVFNENGGPLKLS---EMLLFREFMRRPKRTNSLETQGLVQVGYQGLEKIHKS 366 L P + L+ + L E R N LE GL+++ Y L + + Sbjct: 1040 GERDLPPRLAAAAAKTLREVIAFRLYLDLERGWRVTMPN-LEQTGLLEIDYADLSWLAEQ 1098 Query: 367 PLHWQEKGLTLDDWRD-----FLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKF-VRNP 420 W+ L +KV LD +R S + ++ + +S+ + +P Sbjct: 1099 DDRWERAHPALRQADAPLRTEIMKVLLD-EMRRSLAIDVQYFRDDFDSLQSASEERLVDP 1157 Query: 421 ES--KDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLT 478 K +PQ + L G K + + + Sbjct: 1158 WRLGKSDSPKVATAYPQPSRPGMDRAGLFLSARGKYGKYLRRTHRGFRDDLDNAGLQTVI 1217 Query: 479 GPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTL 538 L + D ++ + F+ +P + + Sbjct: 1218 ADLLKVLRDAGI----VTEVSLAPQKAGH------------FRRSSPTATGYRVTAAAII 1261 Query: 539 AQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVV 598 + T + + S E R + + Sbjct: 1262 WRAGTGETGAHD--PLTRTYASGEGP--------------------RVNTFFRQLYREAA 1299 Query: 599 EGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQA 658 +G EH+AQ Q E+ F L +L CS TME+GVD + + R+ Sbjct: 1300 DGLSGLLAREHTAQVDPGDRQRREEDFSKADLKLLYCSPTMELGVDISSLNAVMMRNVPP 1359 Query: 659 TIP--------GPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNG 710 T + + + F + + + + + Sbjct: 1360 TPANYAQRSGRAGRSGQPALVTTYCATGNSHDQYYFRRSHRMVAGAVAPPRLDLANE-DL 1418 Query: 711 PLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKTKLT 770 S Q W ++ + + + ALALL I Sbjct: 1419 VRSHL-QAIWLAEAGLVLGRAV----PQVLDIAHDETSGTPAPALALLDDIRAASHDPGA 1473 Query: 771 DGAEVT----LDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVEL-TVFDSP 825 V + + W I + A + F A R EL Sbjct: 1474 QARTVAAARRVLGPLLPRFGETTWWDERW--IEEAVAKAPRRFDRAFDRWRELYRTALLD 1531 Query: 826 RDIPHHRKLTVTFEDGQ 842 + + + R L + +G Sbjct: 1532 QYVQNRRVLDHSLTEGD 1548 >UniRef50_UPI0001AF474B DEAD/DEAH box helicase domain-containing protein n=1 Tax=Mycobacterium kansasii ATCC 12478 RepID=UPI0001AF474B Length = 1713 Score = 254 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 120/835 (14%), Positives = 238/835 (28%), Gaps = 158/835 (18%) Query: 12 GSPVYEVAFCNDCNEPHLLARDKKGKLV---QWENKGGDEFS-----LQDEVPVEHDATE 63 G P++ +AFC +C + L+ +G+ + + G DE L D T+ Sbjct: 441 GQPLFPLAFCRECGQEFLVVNLDRGRKSFSPRILHSGIDEQPDATGLLYVTDQPWPDPTD 500 Query: 64 EKVEKENSFQPPLIIAAGETSEAGYTLQR-LDRQTRRIGVINNDSIPLIINDIEQVCSAS 122 + + + AG+ + + + + G I +D +P+ + C + Sbjct: 501 PALLELVPDDWAVSAGAGQALDPARLNKLPVSLRVDPFGSITDDGMPVAFFERLDFCPSC 560 Query: 123 GCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLI 182 Y + R A LG TVL + + L R+ + Sbjct: 561 KTSYESARQSEFSRVASLGTE--GRASAVTVLSQSVVRALRDETD------LDAEARKFL 612 Query: 183 TFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARAKQ 242 F+D+RQ + A + +R ++ H + + L + Sbjct: 613 AFSDNRQDASLQAGHFNDFVIVALIRSALYRAAVNHGDGPLTDENLGPEVVSALGGNKLK 672 Query: 243 AREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERAD 302 + E+ +P +++ +A + + W ++ Sbjct: 673 RFARDEDTADELVP---------RKKIARALRDVVTYR--------LWRDLAR------- 708 Query: 303 IRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGLEK 362 P +LE G +++ Y GL++ Sbjct: 709 -------GWRITMP-----------------------------NLEQTGQLRLDYFGLDQ 732 Query: 363 IHKSPLHWQEKGLTLDD-----WRDFLKVTLDHYVRESNFTQLD-DELKNWIGSRFSSKF 416 + W G L D R + V LD +R + + + + + R +S+ Sbjct: 733 LADDDTKWATLGNPLADADSKIRRQLMHVLLD-ELRRNLCIETEFLSEEKFDAIRRASRE 791 Query: 417 -VRNPESKDPEDNQN--RRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEA 473 +++P + E +P R +V+ L + G G WL+ Sbjct: 792 WLKDPWAITDESGTYSGTAYPGSRPKSVAGTGVDLYLSGLGAYGR----------WLRR- 840 Query: 474 WAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISF 533 RF + + + DT +GL + + Sbjct: 841 --------------PGRFPAHAQKLKVADA-------------DTLIEGLLETMASAGIL 873 Query: 534 EHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDI 593 + + + T ++ E W Q + + R +P + + Sbjct: 874 VRVKMPKRRTGYRIHASLIE-WHAGTGQHRAPDPIRGNRTQGRVNP---------YFRQL 923 Query: 594 NDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLAS 653 + EH+AQ + Q E F N QL VL CS TME+GVD + + Sbjct: 924 YSETAQALVGLEAREHTAQVEPSKRQQREDEFSNAQLPVLYCSPTMELGVDIRSLNVVGM 983 Query: 654 RSQQATIP--------GPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIH 705 R+ T + + F +++ Sbjct: 984 RNVPPTPANYAQRSGRAGRSGQPAIALTYCATGNAHDAYYFRRSQDMVAGAVAPPRLELG 1043 Query: 706 KQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPL 765 + + + + V D + L + + Sbjct: 1044 N------QDLVRA-----HAHAIWLVQCDLDLKASMVELLD---IDQPGEPLRPEVQARI 1089 Query: 766 KTKLTDGAEV-TLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVEL 819 +K + A + + + + P+ +AD D A F A R L Sbjct: 1090 TSKASRAAAIDAITAVLTATSEVTSAPWWTDTWVADTVDRAPARFNLAADRWRGL 1144 >UniRef50_A8MHW5 DEAD/DEAH box helicase domain protein n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MHW5_ALKOO Length = 1903 Score = 252 bits (643), Expect = 4e-65, Method: Composition-based stats. Identities = 106/771 (13%), Positives = 210/771 (27%), Gaps = 140/771 (18%) Query: 10 DCGSPVYEVAFCNDCNEPH-----------------------LLARDKKGKLVQWENKGG 46 D S V EV +C C L K V E + Sbjct: 601 DDKSRVLEVLYCEHCGTVFYGGTRLVDKQEANTYEMHITTPNLEGIPDKQLSVMVEQRKY 660 Query: 47 DEFSLQDEVPVEHDATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINND 106 DE+ + D ++ + ++ F P + Y L + + V + Sbjct: 661 DEYMVFW-PFPREDLHKDSEKWKHEFSAPNGRGTVTAQWSQYKLNIYSGRVKSSKVNQTE 719 Query: 107 SIPLIIN---------------DIEQVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVP 151 + I + C + Y + P R G Sbjct: 720 TDSWINGQLYITKKKENEQFIDALPNRCPSCATDYSKRNRISPIRGFRTGFSKISQIFTK 779 Query: 152 TVLEYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSV 211 + + + T R+L+ FTDSR+ A++A +++ LR + Sbjct: 780 ELFQQIPEDTD----------------RKLVIFTDSREDAAQVANGVERNHYSDLLREVM 823 Query: 212 VEILSWH-----QRTQTSTAPNANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQA 266 ++ + + + + E+ + + ++ + + L Sbjct: 824 IKTIKDEVTLAPEILEAIESGREYTQEEQDRIKNNKVIKEDLLKKLGKINAYKSLPPEHR 883 Query: 267 ----EQLEQAYQAATGGKAATILVSRTWTEMVNELKERAD------IRGPVLQYNHYLKP 316 +LEQ + K +++++V+ ++ I + + L Sbjct: 884 MALESELEQLEREIEEIKENGKSRIISFSQLVSNDYKQCGKLIQELISLGINPCGNDLDK 943 Query: 317 EVFNENGGPLKLSEMLLFREFMRR----------PKRTNSLETQGLVQ----VGYQGLEK 362 + F N E+ F + K N+ + + Y GLE Sbjct: 944 QKFYWNNAEHDWIELFDFETKSWKNNLPVDADEAKKIINNTLSYNFGRLFFGTLYFGLES 1003 Query: 363 IHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVRNPES 422 + L + D L ++L F Q+ D +G R+ + + Sbjct: 1004 SGLGIIKIAYNNEQLKPFADRLGMSL------QTFEQICDSYLRILGERYRYLPQKPVFN 1057 Query: 423 KDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLA 482 + W + + + A +I +L L L Sbjct: 1058 -----RWKKIWQDQFVVDDFPDYTSISASLKTYIRKVAENYNIHEEYLG---ETLINALR 1109 Query: 483 VLKPDGNRFYLPKEHMTFSLITD-AWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQY 541 + + +P ++ ++ D W C K H S T Sbjct: 1110 AFGHNNVKINIPNINIKLAIKEDPIWQCSKCKKY------------HLHFSAGVCTKCGN 1157 Query: 542 DTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGG 601 D EIW + + R T D E Sbjct: 1158 DLDEKATGICEEIWSNNYITQAVLSDRESIRLHCEE------------LTAQTDNQSERQ 1205 Query: 602 FYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQAT-- 659 +++ +RL K ++VL+ +TTME+GVD + T+ + Sbjct: 1206 RFFKGMI----LDEDRLYK-----KVNNIDVLSVTTTMEVGVDIGNLQTVMLANMPPMRF 1256 Query: 660 ------IPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQI 704 +V+ ++ + + F P K T V + + Sbjct: 1257 NYQQRVGRAGRRGQAFSMVLTLCRGRSHDEHYFAHPEKITGDPAPVPFLTM 1307 >UniRef50_D1CII2 DEAD/DEAH box helicase domain protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CII2_THET1 Length = 1698 Score = 247 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 121/874 (13%), Positives = 232/874 (26%), Gaps = 183/874 (20%) Query: 4 NQRQNCDCGSPVYEVAFCNDCNEPH-------------LLARDKKGKLVQWENK------ 44 QR D ++ + FC +C + + L R + +L+ ++ Sbjct: 429 QQRSPRDPQVALFPMVFCRECGQEYYMVTKLSSSADGELELRQRSPRLLPITSEEEEDSE 488 Query: 45 ----GGDEFSLQDEVPVEHDATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRI 100 + L + E E E+ + E + + RI Sbjct: 489 EGYVAIADAELWNGRE-EDLPDEWLEEETRGVRLKPSYKKYRPREIWVHPSGMAHEWERI 547 Query: 101 GVINNDSIPLIINDIEQVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDF 160 D C + F + + T+L D Sbjct: 548 -----DDAIACWYVPRPFVLCLRCMTTFDPREGDFAKLSTLSQ-VGRSTATTILT--SDA 599 Query: 161 TSDEGKEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQR 220 D G P R++++FTD RQ + A + A+ +RG+++ L H R Sbjct: 600 VLDMADLGEAP-----EARKILSFTDVRQDASLQAGHLNDFAQLVTVRGALLRALEQHGR 654 Query: 221 TQTSTAPNANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGK 280 + ++ +A Q E+ ++ T Sbjct: 655 LEAWELG-------------------------------KQIFEALDLQPEEFMRSETQTT 683 Query: 281 AATILVSRTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRR 340 T+++ L + P Sbjct: 684 VPYYRAREAMTDLLQYLALT-----DLRSGWRLSLP------------------------ 714 Query: 341 PKRTNSLETQGLVQVGYQGLEKIHKSPLHWQE----KGLTLDDWRDFLKVTLDHYVRESN 396 +LE GL +V Y+ LE + W+ + T + ++ L+ LD+ +R+ Sbjct: 715 -----NLEQCGLAKVTYRDLEALSLDEPTWKGLPFFEEATPERRQEVLRHVLDY-LRQRL 768 Query: 397 FTQLDDELKNWIGSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFK 456 + + + W+ S + + W LL GA Sbjct: 769 VIRSEHLQREWLRSNLCRRT---------AEYLKDNWALTPEDIYLTSRTALLP-GAQVP 818 Query: 457 TVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLP---KEHMTFSLITDAWICPVTN 513 I + YL H+ + + I + Sbjct: 819 RFEEDGRTTI---------------GLGARSKVGRYLRSTLGNHLGIGELDEI-IKQLCL 862 Query: 514 KILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVT-MPEIWKLDRSQEDYAEGLAKAR 572 ++ + F Y+ + D V + P + + + Sbjct: 863 RLDGSLF-----YVLKSGGEPWGIMLNLDQLVWEPGDGTPPAPNPINQKSVHKVRTEHLK 917 Query: 573 DWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNV 632 + RS + +T + + R EH+ Q ER + E F+ G+L + Sbjct: 918 E-----------RSSDYFTYMYRQRARHMKNIRAGEHTGQVDLERRRQREDQFRKGELPI 966 Query: 633 LNCSTTMEMGVDTDRVMTLASRSQQATIP--------GPEWHLNDELVVRSLGYKTVELN 684 L CS TME+G+D + + R+ T ++ S + Sbjct: 967 LYCSPTMELGIDIADLSAVHMRNVPPTPANYAQRSGRAGRGGKPALILTFSSEGNPHDAF 1026 Query: 685 EFILPAKATNAVERVKDIQIHKQLN---GPLSQFGQRFWDVLFNDHEEAQSLMNNTRITG 741 F + + I + Q S + L + S+ Sbjct: 1027 FFRRKDRMIHGAVLPPRIDLSNQKLIEAHIHSIWLSTIQVGLGRSIGDVLSIEQEGY--- 1083 Query: 742 VHYTDRYLQNPVALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMS---- 797 P+ L I R + L + D + + D P DW+ Sbjct: 1084 ----------PIQAQLWADIERLTRNLLEEIVRTAKDVVERTPDAPPEWFGEDWIRNIVI 1133 Query: 798 --IADFQDFADQWFAAALGRPVELTVFDSPRDIP 829 F D+W +L + + +P Sbjct: 1134 NSPQAFDRAFDRWRELYGAAQRQLQEALTKQSVP 1167 >UniRef50_A6DRF3 Putative helicase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DRF3_9BACT Length = 1813 Score = 245 bits (625), Expect = 5e-63, Method: Composition-based stats. Identities = 95/770 (12%), Positives = 216/770 (28%), Gaps = 136/770 (17%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLARDKK------GKLVQWEN----------- 43 +Y + C+CG+ V ++ C C + L K LV + Sbjct: 554 LYTQPKLVCNCGARVLDLLLCKSCGDIFLGGYRSKLNEKKVEYLVHGQPNLEQIPATMTA 613 Query: 44 -KGGDEFS-LQDEVPVEHDATEEKVEKENSFQPPLIIAAGETSEAGYT----LQRLDRQT 97 + E++ L P E+ + + + L E + + ++ + Sbjct: 614 KELYGEYAVLWLGKPGENKPIDNAWTETSGEVNKLNCTWKEANYNAFKGRVEPGKIGANS 673 Query: 98 RRIGVINNDSIPLIINDIEQVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYC 157 + +N + N C G + V + +L+ Sbjct: 674 YLFSITSNKTKKYDYNCQAMPNKCPQCDSDGRRKDGKSFPPVGLHRTAVQRVNQLLLDAL 733 Query: 158 QDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSW 217 DE + ++L+ FTDSRQ A++A ++ + R +R S+++ Sbjct: 734 FREFDDE------------QAKKLVVFTDSRQDAAKLAAGIELDHYRDLVRQSLMQGFDK 781 Query: 218 HQR--------TQTSTAPNANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQL 269 + + + + ++ + + + + A + + +Q+ Sbjct: 782 LGGDKGIALKYLEAGSPKDFTEEEKEQFKDFRARDSKLFNAIRDFLDEMAS--EEELKQI 839 Query: 270 EQAYQAATGGKAATILVSRTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLS 329 EQ +G + + W ++++ A K + +GG + S Sbjct: 840 EQLKDKKSGPYPMGRVTNLVWEDLLSLGVNPAGPNPS-----RQTKKVKLDADGGYVTTS 894 Query: 330 EMLLFREFMRRPKRTNSLETQGLVQVGYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLD 389 L R+P+ ++ + + L++ + TL Sbjct: 895 WRELIDWEGRKPENKDAFDLLPQAKTLKNELDQAAADECVFTMFAHKRKSVEALALGTLT 954 Query: 390 HYVRESNFTQLDDELKNWIGSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLL 449 + S+ D L +W E + + R + R + ++ Sbjct: 955 F--KPSDIEFDTDGLLSWK------------EFSNIANIVIRVLGEKRRISGNNYFNNAS 1000 Query: 450 MLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSL---ITDA 506 + + N+ L L + + + + FS Sbjct: 1001 LPKELKSLLKKKFPGDENSILNLLKDFLLSKGVLESEEN--LVIKPSGLWFSPCKMGDKI 1058 Query: 507 WICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAE 566 W C + + P K R + + Sbjct: 1059 WRCKQC----------------------SSVHLNNEIHLCWNCRSPLDPKDFRLKSNSDS 1096 Query: 567 GLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFK 626 ++ + + E F E + Q S E +++F+ Sbjct: 1097 -------------------EQDYYAYLASSKAE-TFRLHCEELTGQTSHENAVKRQRLFQ 1136 Query: 627 N-----------GQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRS 675 + ++VL+ +TTME GVD +M + + + R Sbjct: 1137 DIISGDKEVSLIDCIDVLSVTTTMEAGVDIGSLMAVMMGNVPPKRF--NYQQRVGRAGRR 1194 Query: 676 L----------GYKTVELNEFILPAKATNAVERVKDIQIHKQ--LNGPLS 713 ++ + F P + ++ + + +Q LN +S Sbjct: 1195 GAGLSIALTVARGRSHDETHFCDPQRMISSNPTPPYLDLKRQAVLNRMVS 1244 >UniRef50_C0Q9L0 Dbp n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0Q9L0_DESAH Length = 1961 Score = 242 bits (617), Expect = 4e-62, Method: Composition-based stats. Identities = 133/910 (14%), Positives = 250/910 (27%), Gaps = 183/910 (20%) Query: 12 GSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVP--VEHDATEEKVEKE 69 G P Y + C C +P++ KL+ KG D+ Q T+ E Sbjct: 506 GRPYYPLFVCRRCGQPYIEGFTDGSKLLNSL-KGIDQSDKQYIRKVFWLGQPTKSSALDE 564 Query: 70 NSFQPPLIIAAGETSEAGYT------LQRLDRQTRRIGVINNDSIPLIINDIEQVCSASG 123 + P+ + + Y L+ D + I + ++ I + V + Sbjct: 565 LDDETPVKVQKDKNKSPTYLNPENGDLKHEDEGGQYIRLYEVETTRDEIEKNDYVRKCNA 624 Query: 124 CGYRGMSGK-QPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLI 182 CG R + G + + VLE + + P +GR L+ Sbjct: 625 CGSRASGASAEIISPMNSGNEAFGAVVCQKVLENLPPAKNID-------HVTPMQGRSLL 677 Query: 183 TFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARAKQ 242 TF+D+RQ A A ++ + LR ++ ++L + DL L + + Sbjct: 678 TFSDNRQNAAYFAPYFERTSGELALRTAIYQVLKKEDELMSID------DLAYLIFKFWK 731 Query: 243 AREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERAD 302 + + KL + + + + Sbjct: 732 KNGEP-----IVIDSAGKLIENRERRTDHIMGKVAA------------------------ 762 Query: 303 IRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGLEK 362 + P + L L +R KR LV+ + Sbjct: 763 ---------EFCTPGGRRNSLEALGLVH---VTYESKRFKR--------LVKTITPFI-- 800 Query: 363 IHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFT----QLDDELKNWIGSRFSSKFVR 418 P H +++ ++ + L +R +D G +S K Sbjct: 801 ----PEHDRKEAKSVA-------LFLLETIRRGKAIVNLYDIDLTDPFIWGEIYSQKRSF 849 Query: 419 NPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLT 478 P W ++R L++ G+ T+L W L Sbjct: 850 ELHKTSPGYT--TGWIPAEGRKQNNRRTWLIVERLGWSWEQT------RTFLSNFWESLI 901 Query: 479 GPLAVLKPDGNRFYLPKEHMTFSLITD--AWICPVTNKILDTAFKGLTPYLPTHISFEHL 536 L L+P + L + + F D C Sbjct: 902 -SLKFLRPARPGYGLDAKLIRFENGNDHTLHRCEDCG----------------------- 937 Query: 537 TLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDR 596 L+ +DT + + K E + + N + I D+ Sbjct: 938 -LSTFDTVSSCCSSFLCKGKTKPVSEKERKKRIEY----------------NHYVSIYDQ 980 Query: 597 VVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQ 656 + EH+A S+E Q E+ F ++N+L+C+TTMEMGVD + + + Sbjct: 981 GTALTT--KANEHTASLSTELRQQIEQDFSIRKINLLSCTTTMEMGVDLGDLEAVVCLNI 1038 Query: 657 QATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFG 716 I + R + ++ + + P Sbjct: 1039 PPGI--SNYQQRTGRAGRRAQAAPFCVTVARNSQYDQMVFSNFRE-YLMQPAPIPRIHLE 1095 Query: 717 QRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKTKLTDGAEVT 776 + + N D + P L D + Sbjct: 1096 NAKLFQRHQNSVVLSGFLRNR------IPDTSINAP-----------SLSDFFGDRFDDE 1138 Query: 777 LDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVELTVFDSPRDIPHHRKLTV 836 FKD + W+ + ++ P +L F + LT Sbjct: 1139 ALNEFKDD-------LNAWLESEEGAASENEASRLVASLPKDLQSFIGLS----GKALTG 1187 Query: 837 TFEDGQVLKIRFDQGM-GYWRINFSSQWHYFDFRDDVSFQL--VKMAQACKEGNVANS-- 891 F + L ++ Q + G WR+ +S + D ++ L + ++ + Sbjct: 1188 KFTE---LILKLAQDVNGRWRV-YSEKRKALLKEDKLNKALHWENLRKSYMTQFLVTQLS 1243 Query: 892 -EESWATDVL 900 T Sbjct: 1244 LHGMIPTYSF 1253 >UniRef50_A1B283 DEAD/DEAH box helicase domain protein n=4 Tax=Alphaproteobacteria RepID=A1B283_PARDP Length = 1725 Score = 241 bits (615), Expect = 7e-62, Method: Composition-based stats. Identities = 134/885 (15%), Positives = 251/885 (28%), Gaps = 145/885 (16%) Query: 12 GSPVYEVAFCNDCNEPH-LLARDKKGKLVQWENKGGDEFSLQDEVPVEHDATE-----EK 65 G+ +Y FC +C + + ++ + +++ + D+ L E E + Sbjct: 450 GNRLYPTRFCRNCGQEYHVVTKVDDDGSLRFLPRSIDDTPLDTE---EDEVAGYLCPVTP 506 Query: 66 VEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIIND---------IE 116 + + F L E ++RL ++ ++ + Sbjct: 507 GDTDFQFTGELEGYPESWREEKNGIERLRGYRKKRMPVSYVVGADGRHGAGGNDFWFIPG 566 Query: 117 QVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPG 176 + C G + R L G + T+L ++ G +P Sbjct: 567 KFAFCLCCHDEPTQGMRE-RSKLAGLSGEGRSSATTLLVASALEWMNKPGSG-----VPE 620 Query: 177 RGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKL 236 R+L+ FTD+RQ A + S LRG+++ + + ++ L Sbjct: 621 TKRKLLGFTDNRQDAALQSGHFNDFLFVSLLRGAILRAVIAAGSGGLAEDEFGLQVVKAL 680 Query: 237 AARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNE 296 A ++A ++ A + + L + +L R WT++ Sbjct: 681 --GFTAANKEARQHWLLDSNAGAIIREDAQRSLAK------------VLAHRVWTDL--- 723 Query: 297 LKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVG 356 + + P SL L+ V Sbjct: 724 -----------RRGWRFTNP-----------------------------SLSVLNLIDVN 743 Query: 357 YQGLEKIHKSPLHWQE-----KGLTLDDWRDFLKVTLDHYVRESNFTQLDD-ELKNWIGS 410 + GLE+I + + L+L+ + LK L + E Q + +L G Sbjct: 744 FLGLEEISEDRERFMAIHPALGDLSLEQRQAILKAILSAML-EGLAVQTEALDLTVLDGV 802 Query: 411 RFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWL 470 S+ + + P + P+ R+ L + N T+ T L Sbjct: 803 AQKSRMLL----QAPWAIDQKENPRARS-----------SLVLRAGSKNVVTLREEQTLL 847 Query: 471 KEAWA----QLTGPLAVLKP--DGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLT 524 + +L +VL + + +Y E M L + + PV LD+ G Sbjct: 848 RAGPNSRIARLVNRKSVLGMKLNKDEYYEFMEGMLVFLSEEGLLVPVE---LDSDVTGW- 903 Query: 525 PYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQL 584 L A D +++ S + H ++Q Sbjct: 904 -RLSPSAVRLVPGPALDDETHCGNRYFHDLYTAIASDLGDGRSSYWGLEGREHTAQVSQ- 961 Query: 585 RSENVWTDINDRVVEG-GFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGV 643 + W + R + + T+E+ + R F L L CS TME+GV Sbjct: 962 -KQREWREWRFRFEQDDMDHLATSEYRTEI---RATGESDRF----LPALFCSPTMELGV 1013 Query: 644 DTDRVMTLASRSQQATIP--------GPEWHLNDELVVRSLGYKTVELNEFILPAKATNA 695 D + + R+ T +V + F Sbjct: 1014 DISALNAVYLRNVPPTPANYAQRAGRAGRSGQAAVVVTYCASGSPHDQYFFERRNDMVAG 1073 Query: 696 VERVKDIQIHKQLNGPLSQFGQRFWDV----LFNDHEEAQSLMNNTRITGVHYTDRYLQN 751 V R + I + S + L D E L + + + Sbjct: 1074 VVRPPALDITNE-ELVRSHLHAVWLAEAKLALSPDIPEILDLHGDKFPLKEDVLEVISKP 1132 Query: 752 PVALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAA 811 + G + R LK L T + D + +F D+W Sbjct: 1133 ALVSQARGPMARVLKQILASDGGQTPIWM---NDPDEFVLHTAMNAPKEFDRAFDRWREL 1189 Query: 812 ALGRPVELTVFDSPRDI-----PHHRKLTVTFEDGQVLKIRFDQG 851 +L + +I RK+ Q +QG Sbjct: 1190 YSSARTQLAEANKRSEITGLSGADRRKIKAAQMQAQDQIAILEQG 1234 >UniRef50_B2JBC8 DEAD/DEAH box helicase domain protein n=4 Tax=Cyanobacteria RepID=B2JBC8_NOSP7 Length = 1782 Score = 241 bits (614), Expect = 8e-62, Method: Composition-based stats. Identities = 106/860 (12%), Positives = 229/860 (26%), Gaps = 160/860 (18%) Query: 15 VYEVAFCNDCNEPHLLARDKKGKLV-----------QWENKGGDEFSL-QDEVPVEHDAT 62 +Y + FC +C + + + R K + ++ E L DE + + Sbjct: 539 LYPLVFCRECGQDYYVVRYDADKHIILPQLPTALDISPDDADITEGYLTLDEPELWDTSD 598 Query: 63 EEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCSAS 122 E+++ + + + ++L + + + Sbjct: 599 EDRLPDSWFSETKKKGRVAKKDFVRFIPRKLQILPNGKVTSSLLQETTCWFIPKPFLTCL 658 Query: 123 GCGY-RGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRL 181 CG + + + L + T+L + G + ++ Sbjct: 659 NCGVLHDKKRNEFAKLSRLSSE--GRSTATTLLCLSTTSRLKQVFTGEK-----AKAAKI 711 Query: 182 ITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARAK 241 ++FTD+RQ + A + S LR ++ L + A+ K Sbjct: 712 LSFTDNRQDASLQAGHFNDFVQTSFLRAAL---------------------LGAIQAKGK 750 Query: 242 QAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERA 301 + M QA + + I Sbjct: 751 LTHSELASVVVQYMGITQNDYAKQAAEFGVGKRRNEEAFRKLIEYR-------------- 796 Query: 302 DIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGLE 361 + + + ++P +LE GL+ + Y GL+ Sbjct: 797 -LYEDLRRGWRIVQP-----------------------------NLEQCGLLIIEYDGLQ 826 Query: 362 KIHKSPLHWQEKGLTL-----DDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKF 416 + WQ+ L R + +++R Sbjct: 827 EACADNNLWQKHRHPLLLQATPQQRFIITQAFLNHLRRELAIDA---------------K 871 Query: 417 VRNPESKDPEDNQN---RRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEA 473 + P+ KD ++ + P + + N LA + G + Sbjct: 872 LLQPDQKDSLKSEVIQALKEPWVFDENEYLYLATWATISTGGNEKAKVKLTT-------- 923 Query: 474 WAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISF 533 + N + L + L+TD + ++D YL S Sbjct: 924 ----RSKIGRFLRSPNTWSLRSQ-----LLTDVEFNSLITTLIDAL--CDAGYLVQEKSE 972 Query: 534 EHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDI 593 L + +P R + + + + Sbjct: 973 VQLRIDSLLWKATNLKEIPTDPLTSRRLQGNDK---------------PNISVNQFFQGF 1017 Query: 594 NDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLAS 653 EH+ Q S++ Q E+ F+ GQL L CS TME+G+D + + Sbjct: 1018 YQTNALQIQTMEGREHTGQVSNKDRQEREEKFRQGQLAALFCSPTMELGIDISDLSVVHL 1077 Query: 654 RSQQATIP--------GPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIH 705 R+ + ++ + + F + V +++ Sbjct: 1078 RNVPPSPANYAQRSGRAGRSGQQALVITYASIGSGHDQYFFKRQNQMVAGVVAPPKLELA 1137 Query: 706 KQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPL 765 Q + S + E++ + + + + D Q L L Sbjct: 1138 NQ-DLIKSHVYSIWLAHTGVYLEDSMNKILDLELENYPLKDSIRQQ------LTLSQAKL 1190 Query: 766 KTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVELTVFDSP 825 L + D ++ + + +W+ + + A F A R +L + Sbjct: 1191 TQCLQAAQSIFSDFFCQEDLQKASWYSVNWL--QNTIENALNAFDRACKRWRDLYIESVK 1248 Query: 826 RDIPHHRKLTVTFEDGQVLK 845 + + R+ F G + + Sbjct: 1249 Q-LESARRTIDRFARGDIAQ 1267 >UniRef50_UPI000185C0CA conserved hypothetical protein n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185C0CA Length = 2117 Score = 240 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 116/875 (13%), Positives = 236/875 (26%), Gaps = 120/875 (13%) Query: 16 YEVAFCNDCN-EPHLLARDKKGKLVQWENKGGDEFSLQDE---VPVEHDATEEKVEKENS 71 +C +C + A + ++ K + S+ + P+ +E + Sbjct: 523 LPACYCRNCGRSGWMTALAAGEESIETSGKKIRQQSIYNGFLMRPLLDATSEITSGHYRT 582 Query: 72 FQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINN--DSIPLIINDIEQVCSASGCGYRGM 129 I E + + + G I D+ + S CG Sbjct: 583 EDESAGIFWLNVREEQLSTSEPSEEEKEQGGIVPVLTYSGENTEDLAKKQSCPSCGETNS 642 Query: 130 SGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQ 189 Y+ + V T+L G L ++ + F DS Q Sbjct: 643 IR-------------YLGSSVATLLSVAISNLFGMGD-------LDDSEKKSLVFVDSVQ 682 Query: 190 GTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARAKQAREQAEE 249 A A +Q A +R R P ++L + Sbjct: 683 DAAHRAGFVQSRARTFAIR--------TRTRQMVGDTPIRLSELPSKLIDSTDQDSSPSR 734 Query: 250 YRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERADIRGPVLQ 309 + +P +Q + +A +L ++ E +R+D+ ++ Sbjct: 735 AKFELLPPWVAENQRFRGFWDPLAGKKDRERATELLRDVLELDLALEFGDRSDLSRSLVS 794 Query: 310 YNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGLEKIHKSPLH 369 ++ + E+ + RE P E+ G V + + L Sbjct: 795 TGALSVGVDVSDAELDEVIGELGMLREDS--PASQA--ESLGARDVAW------ARGILE 844 Query: 370 WQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVRN--PESKDPED 427 + + ++ + L+ L H + N L+ + G + P P Sbjct: 845 YMRQAGGIE--TNLLRSYLKH---DGNAYLLNRREASARGIPKFPRGGAPSFPRVGKPLP 899 Query: 428 NQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPD 487 + + + A+ T +AA ++ + K + Sbjct: 900 TEKTDYSFNPLSSARGAYARWTASMLKISTSDAAH--LVTSLFKTLADRAIVNAVTTDSG 957 Query: 488 GNRFYLPKEHMTFSLITDAWI--CPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFV 545 G + L + + I C V + L G Sbjct: 958 GTIYTLSPSRIVICPEERSEILECSVCQRRLAVDSHGR---------------------- 995 Query: 546 AQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYR 605 E+ EG + +HD +L + N R V Sbjct: 996 -------ELLDGSPCISLGCEGTFGITE--NHDNYYRRL-----YHSRNSRTV------V 1035 Query: 606 TAEHSAQQSSERLQSYEKMFKN-------GQLNVLNCSTTMEMGVDTDRVMTLASRSQQA 658 EH+ S+ EK FK N+L + T+EMG+D + T+ S Sbjct: 1036 AKEHTGLLDSDERVELEKEFKKPVDKQNADAPNILVATPTLEMGIDIGDLSTVMLASLPD 1095 Query: 659 TIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQR 718 T+ V R + N +L + + + G + Sbjct: 1096 TV--------ASYVQRVGRAGRLTGNSLVLAMVVGRQKALARLTNPTETIGGEVQP-PAA 1146 Query: 719 FWDVLFNDHEEAQS-LMNNTRITGVHYTDRYLQNPVALA---LLGSILRPLKTKLTDGAE 774 F H + L+++ T RY + + L+ +++ L+ + + Sbjct: 1147 FLSAREILHRQFAGYLIDSIDFTQTEVKPRYANSVFGIGGKNLVSELVQRLEAGVESLVD 1206 Query: 775 VTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVELTVFDSPRDI--PHHR 832 T+ +W+ + R V + ++ R Sbjct: 1207 EFASTIEGLTRPSVLDELREWVREGFAEQLRRAEKDWRAARQVLIGRRKVLEELLDQLER 1266 Query: 833 KLTVTFEDGQVLKIRFDQGMGYWRINFSSQWHYFD 867 + D ++++ + +R + FD Sbjct: 1267 EAETAIAD-DEIRLKLRKTRAAYRFTRAQLQDSFD 1300 >UniRef50_C9RZB7 DEAD/DEAH box helicase domain protein n=2 Tax=Geobacillus RepID=C9RZB7_GEOSY Length = 1787 Score = 239 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 106/750 (14%), Positives = 197/750 (26%), Gaps = 187/750 (24%) Query: 1 MYVNQRQNCDCG--SPVYEVAFCNDCNEPHLLAR--DKKGKLVQWE------NKGGDEFS 50 MY + + C C + VYE+ C + K G + E + E Sbjct: 556 MYDSPKLQCTCSKEARVYELLTHRKCGTAFIRGYISKKDGNYLWAEKGKGIVGEELTEIH 615 Query: 51 LQDEVPVEHDATEEKVEK--ENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSI 108 L E P E E+ + + ++ + GY L +I Sbjct: 616 LLVEPPHEKIQKGERSVRPVWLDIRTGYLMKSPPEDPEGYLKLYLPHDEANKNKKKKQTI 675 Query: 109 PLIINDIEQVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEG 168 Q C + G N+V ++ Sbjct: 676 TF------QQCPCCM-----RKVQGTITDLKTKGEQPFANLVREQFLLQPPVKLNKQ--- 721 Query: 169 VGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPN 228 LP GR+++ F+D RQ AR+A + E E R S++ Sbjct: 722 -----LPNEGRKVLLFSDGRQKAARLARDIPHEVELDSFRQSIL---------------- 760 Query: 229 ANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSR 288 LAA+ ++ + ++ + + IL Sbjct: 761 -------LAAQKLIDQDIEPKLSGALYCSLLQVIDEHKLYFFEGQDRKSLAYHVQILHED 813 Query: 289 TWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEML--LFREFMRRPKRTNS 346 E ENG L L R+ + Sbjct: 814 F-----------------------DGDYEELIENGDIELLPRFKTELLRQLCHPLYSVYT 850 Query: 347 LETQGLVQVGYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQ-LDDELK 405 T G V+ + + ++ + K D YV F Q + D + Sbjct: 851 TAT-GYVEPVKREMARVERKLKEILSKE--------------DIYVLTMLFIQEMLDRVA 895 Query: 406 NWIGSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDI 465 F + D + G + L ++ L +I Sbjct: 896 IDSTIHFYERLKIRGFGGDDWG--------VEKGYIPKNLENIIHLYVQ---SEEHKKEI 944 Query: 466 INTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSL--ITDAWICPVTNKILDTAFKGL 523 ++ K + R+YL + T + C ++ Sbjct: 945 VDALFK-----------LCTESEGRYYLSPRKLKLIPGIYTTWYKCNDCKEM-------- 985 Query: 524 TPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEG--LAKARDWVSHDPLI 581 ++ A+ + EI ++ + D +G + + +++ I Sbjct: 986 -----------NIVAAKNKCVNCLSENI-EILDVNSKRLDSEKGFWRSPIQKILTNHEKI 1033 Query: 582 AQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERL-------QSYEKMFK-------N 627 + + EH+AQ S + + YE F+ Sbjct: 1034 SNIT--------------------VEEHTAQLSQKDAKIAIATTEEYELRFQDIILDVLE 1073 Query: 628 GQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLG---------- 677 G +++L+C+TTME+GVD + + R+ + R Sbjct: 1074 GPVDILSCTTTMEVGVDIGSLTAVGLRNVPPQRE--NYQQRAGRAGRRGTALSTVVTYAQ 1131 Query: 678 YKTVELNEFILPAKATNAVERVKDIQIHKQ 707 + F P K + R + I + Sbjct: 1132 GGPHDYYYFQQPEKMISGSARKPIVYIDNK 1161 >UniRef50_C8PSY6 Dead/deah box helicase domain protein n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PSY6_9SPIO Length = 1794 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 107/863 (12%), Positives = 229/863 (26%), Gaps = 152/863 (17%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVE-- 58 +Y R C CG+ V E C C E L L G + + V Sbjct: 530 LYTAPRNRCTCGAAVLEAVVCRQCGELFLSGYIDNRMLSNTPPLVGHGGAQNENVRTRII 589 Query: 59 -----HDATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIIN 113 D E + + + AAG G + + + + ++ Sbjct: 590 LYKISKDDKTENNARRPNAGNGIWRAAGYDPITGTVTGGIQGGYQSYTIQDENTDSF--- 646 Query: 114 DIEQVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDS 173 CG++ + R V V + D D ++ D Sbjct: 647 ----PLECPRCGFKLRDSGEG--RNTFTALTTHGTGVQKVNQLFADGLMDILRKANPND- 699 Query: 174 LPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADL 233 +L+ F+DSRQ A+++ ++ + R LR ++++ L + N ++ Sbjct: 700 -----AKLVLFSDSRQAAAKLSAGIELDHYRDSLRAALMQSLEEASDAKMYLKKIRNKNI 754 Query: 234 ------EKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVS 287 ++ + K Y + D+ LS Q +L + Sbjct: 755 TFKEVPPEIQDKIKTDITLNNWYTKIMVVDEGFLSPQQISELNHYLSTDNVLLSDITTA- 813 Query: 288 RTWTEMVNELKERADIRGPVLQYNH-----YLKPEVFNENGGPLKLSEMLLFREFMRRPK 342 T +V + A +N + L + R+F R Sbjct: 814 -VMTRLVRKGINPAGPYPSYQTFNDNNQSKLSWETAIDWKANYQFLRDTQAQRDFADRIA 872 Query: 343 RTNSLETQGLVQVGYQGLEKIHKSPLHWQEKGLTLDDW-RDFLKVTLDHYVRESNFTQ-- 399 ++E V + T ++ + KV+ R + Sbjct: 873 NQCTVEILKTV----------------FGTNKRTFENLGIGYFKVS-----RSNGSVDQV 911 Query: 400 LDDELKNWIGSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVN 459 L D + +G + E++ + R++ +I G R Sbjct: 912 LADSIVRILGESWRILDSEESETES-LAQRARKFIEIFTGTRYSRDVN------------ 958 Query: 460 AATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTA 519 I L L + D R +T + L+ Sbjct: 959 --KAPEIWNVL----NALIDKKVIESNDDLR--------------------ITGRGLE-- 990 Query: 520 FKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDP 579 ++ + + Q+ +K + Sbjct: 991 -----------FVTCNIGDPIIQCSKCGTLDLH------PDQQFCTFCRSKITE--QDRI 1031 Query: 580 LIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMF----------KNGQ 629 L + + ++ +T ++ E E + Q + Q ++ F + Sbjct: 1032 LFTKEQQQSFYTQMSSE--ERISRLHCEELTGQTNKTDAQKRQRYFLGLLKSEENKLTNE 1089 Query: 630 LNVLNCSTTMEMGVDTDRVMTLASRSQQAT--------IPGPEWHLNDELVVRSLGYKTV 681 +++L+ +TTME GVD + + + L V + Sbjct: 1090 IDLLSVTTTMEAGVDIGSLSAVMLGNVPPQRFNYQQRVGRAGRRGSALSLAVTVAKVNSH 1149 Query: 682 ELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITG 741 + + P + + I ++ + + + + + Q++ ++ Sbjct: 1150 DQLHYHHPERMVAGMPAEPYIDLN-----STAILKRFITKEVLHQAFQEQNVPSDNAAVH 1204 Query: 742 VHYTDRYLQ-------NPVALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHD 794 + D + + + + + +D + LF D Sbjct: 1205 GEF-DLAVNWEQHRDSIQQWIHTHHTTIHNIIDVFSDKNRTDKNILFYFITDELITAIDD 1263 Query: 795 WMSIADFQDFADQWFAAALGRPV 817 + +F AA G Sbjct: 1264 ALKKEEFIQLYLSERLAAAGLLP 1286 >UniRef50_C8XHE6 Helicase domain protein n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XHE6_NAKMY Length = 1780 Score = 235 bits (598), Expect = 7e-60, Method: Composition-based stats. Identities = 104/758 (13%), Positives = 206/758 (27%), Gaps = 139/758 (18%) Query: 1 MYVNQRQNC---DCGSPVYEVAFCNDCNEPHLLAR--------------------DKKGK 37 +Y R +C CG+ V E+ +C +C + L D G Sbjct: 520 LYDTPRSSCLVPKCGARVLELLYCYECGDVSLGGYIVDKMGDGTVVLSTTPVKAGDNTGD 579 Query: 38 LVQWENKGGDEFS-LQDEVPVEHDATEEK-----VEKENSFQPPLIIAAGETSEAGYTLQ 91 LV + DE+ L P + + E + + + A + T Sbjct: 580 LVYR--RTDDEYRWLWIGSPAPDEPIRHQLPASVSEDRATIEFNFVEAIYDPGLGSLTPA 637 Query: 92 RLDRQTRRIGVINNDSIPLIINDIEQVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVP 151 I +D + I + +VC G + F + P Sbjct: 638 SGPGNCVTIRHSGSDLDGVAIPALPEVCP-RCHGRQSNRDLSVFFAGSVRSPIRAHTSGR 696 Query: 152 TVLEYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSV 211 + L +S R I FTDSR AR+A + R ++R V Sbjct: 697 SQLNQMAVSQLFRSLGHEASES------RTIVFTDSRDDAARIAAGISLNNFRDQVRQVV 750 Query: 212 VEILSWHQRTQTSTAP--NANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQL 269 ++L + + +A A + Y + + ++ Sbjct: 751 RQLLHDRVSPVPTLRALIRGALNAGDVAMALSIASGRRSLYDKLRLEHAGLATDEDRAEI 810 Query: 270 EQAYQAATGGKAATILVSRTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLS 329 E A + A A ++ + +V A + V L + Sbjct: 811 ESAEREAETLPWALMVRETS-RVLVKAGINPAGVGPSVAHSVGDLPWYRAYPPPQEADWA 869 Query: 330 EMLL-FREFMRRPKRTNSLETQGLVQVGYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTL 388 + E ++ + + E + + + L G+T + Sbjct: 870 RLESRIAEPVQLERERLTSEAVTQAVFD-RASRDLESTRLGVVRAGITAPSDWGLAQEDA 928 Query: 389 DHYVRESNFTQLDDELKNWIGSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKL 448 D + S+ +L + G + G+V L K+ Sbjct: 929 DDLI--SSVLRLLGIANRYEGGYVAMTTSAP-------------------GSVRRYLTKV 967 Query: 449 LMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWI 508 +G G + ++ +L+ + LT L+ + L + ++ W+ Sbjct: 968 -AVGQGLEPERLI--ALVGEFLRSS--GLTDDSWTLRTMSGQDVL----LLKVPGSELWV 1018 Query: 509 CPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGL 568 C + H+ + + P + D Sbjct: 1019 CSNCGTV--------------HLHRSVGVCTNEECVNGRLEPTPVGEQNDDYYG------ 1058 Query: 569 AKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFK-- 626 W++ L R AE + Q S ++ +++F+ Sbjct: 1059 -----WLASHEL---------------------RRMRVAELTGQTSLSEQRARQRLFRGA 1092 Query: 627 ----------NGQLNVLNCSTTMEMGVDTDRVMTLASRSQQAT--------IPGPEWHLN 668 L++L+ +TTME+GVD + +A + Sbjct: 1093 VLPAPQESKLADPLDLLSVTTTMEVGVDIGSLRAVAMANMPPQRFNYQQRVGRAGRSGQP 1152 Query: 669 DELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHK 706 + + + F P + T A I + + Sbjct: 1153 YSFALTISRDRAHDDYYFQSPERMTAADPPPPFIDLSR 1190 >UniRef50_A6G8L6 DEAD/DEAH box helicase domain protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G8L6_9DELT Length = 2132 Score = 234 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 116/782 (14%), Positives = 213/782 (27%), Gaps = 131/782 (16%) Query: 3 VNQRQNCDCGSPVYEVAFCNDCNEPHLLARDKKGK-----LVQWENKGGDE-FSLQDEVP 56 + C CG+ VYE+ C DC L K + L+ GD L V Sbjct: 605 FDPGPRCRCGARVYELYTCRDCGATFLRGYVKGYELDAWSLLWSSPAEGDGLRPLDLLVE 664 Query: 57 VEHDATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIE 116 E +E F P + + + R + V N Sbjct: 665 ENAVHDEAADVREARFDPLRGRISAASDDKSA------GSLREVVVPANPGASADAGFWA 718 Query: 117 QVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGP----D 172 S + G + P G N++ L E + Sbjct: 719 CPVCMSAERHGGTRQRSPVTPHRTQGAQPFLNLIQAQLAAQPAKPPKEEETEEARARRLR 778 Query: 173 SLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSV---VEILSWHQRTQTSTAPNA 229 P GR+ + F+DSR+ A ++++ + A + +R + +LS + Sbjct: 779 IAPLEGRKALAFSDSRRAAAELSIQANEFALKDAVRPMLLVGWRMLSEAYEELCAETARR 838 Query: 230 NADLEKLAARAKQA--------------REQAEEYRSWGMPDQ-AKLSQAQAEQLEQAYQ 274 N L K + + A + +PD A S+ ++ A + Sbjct: 839 NEVLLKADLQPVEDPKPLDLTAAGQAALLGAARLSQRLRVPDIGAADSEQLYAAMKVAER 898 Query: 275 AATGGKAATILVSRTWTEMVNELKER--ADIRGPVLQYNHYLKPEVFNENGGPLKLSEML 332 A + A + W ++ E ER D + +G ++ L Sbjct: 899 LANMMRQAKDVRPPKWATLLKEFAERRPPDPSEDPADVGAPAVVRDWVLSGLSGAMAPRL 958 Query: 333 LFREFMRRPKRTNSLETQGLVQVGYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYV 392 KR L L V + + Q G+ + LDH Sbjct: 959 GGGTGRAASKRAMDLWGLALASVR-PTRGGLSSARAKIQSAGVLPVGLIS-SDLLLDH-- 1014 Query: 393 RESNFTQLDDELKN-WIGSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLML 451 L W+G + V E+ + + ++ P+ + + R + Sbjct: 1015 -------LCGRWLRLWLG-----RGVLLSEAVEAGVDFPKQVPKRLDAKHAERWKGAMNE 1062 Query: 452 GAGFKTV--NAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWIC 509 K N ++ + +L G + L+ D N + C Sbjct: 1063 ALNLKDKDTNKLHRALLEAFCDAE-RRLLGRVLTLEVDCNLAHWRG-------------C 1108 Query: 510 PVTNKILDTAFKGLTPYLPTHISFEHLTLAQY--DTFVAQKVTMPEIWKLD-RSQEDYAE 566 G+ P +P Q+ + + + + D + + Sbjct: 1109 RRCR--------GVQPVVPQAAVLALGDDGQWLLECERCRDEDTACLAEPDVVAWFEARR 1160 Query: 567 GLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSY----- 621 +AR + D L + V EH+AQ ++ Sbjct: 1161 THYRARAAEALDGLQENVSKAG-------EQVVLPALPLAGEHTAQLGELDREALFNTAE 1213 Query: 622 --EKMFKN-------------------------GQLNVLNCSTTMEMGVDTDRVMTLASR 654 E F++ ++L+ +TTME+G+D V +A R Sbjct: 1214 INELRFQDVDLGPVGKAKKNTDGEYSIEGRKESDAFDLLSSTTTMEVGIDLGAVSAVALR 1273 Query: 655 SQQATIPGPEWHLNDELVVRSLGY----------KTVELNEFILPAKATNAVERVKDIQI 704 + + R K + F PA + + Sbjct: 1274 NMPPRRD--NYQQRAGRAGRRGDGISTVIAWANDKPFDRQHFEHPADLISGPPTNPRLDT 1331 Query: 705 HK 706 + Sbjct: 1332 NN 1333 >UniRef50_A0QRV7 DEAD/DEAH box helicase n=2 Tax=Actinomycetales RepID=A0QRV7_MYCS2 Length = 1667 Score = 233 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 102/735 (13%), Positives = 204/735 (27%), Gaps = 170/735 (23%) Query: 1 MYVNQRQNC-DCGSPVYEVAFCNDCNEPHLLAR--DKKGKLVQWENKGGDE---FSLQDE 54 +++ + C DC +P +E+ C C H+ + G L K G F L D Sbjct: 467 VHLARHLICPDCDAPAFEIGSCKRCGAVHIYGTPTQENGSLYLRPRKAGGRGTWFVLGDH 526 Query: 55 VPVEHDATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIIND 114 + + V+ + RL +G + + Sbjct: 527 DGLTDEDEAAAVDDGDEVSGD--------------GARLCTYCGALGDDDAST------- 565 Query: 115 IEQVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSL 174 C + + R G+E G Sbjct: 566 ------CGACASSELRPVRKLR--------------------------QRGEEIAGCLVC 593 Query: 175 PGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLE 234 RG GT RM +A + + ++ + + + +T P L Sbjct: 594 GARGA----------GTVRM-FETGPDATGAVITTALYQKIPPANDSHGATTPGEGRKLL 642 Query: 235 KLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMV 294 + + A A + S+ Q +L A + ++V Sbjct: 643 AFSDSRQAAAYFAPYL-------EESYSRLQRRRLISQGMLAAHADEEPAGIE----DIV 691 Query: 295 NELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQ 354 + + +A V + + + P ++E+L + SLE GLV Sbjct: 692 FKTRSKAA---GVKHFPGRMTAQQQTRVVAPWVMAEVLATDD-------RQSLEGLGLVS 741 Query: 355 VGYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSS 414 + + ++P + GLT + FL+ + +R+ + +++ F+ Sbjct: 742 ISLHRESR-WQAPRPLLDIGLTDVEAWAFLQELVR-TLRQQGAVTMPEDVP-PNDQIFAP 798 Query: 415 K--FVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKE 472 + +R S + W R N + ++ + LK Sbjct: 799 RLGPIRARLSGPESIRKVLSWLPGRGTNRRVDYTRRVLQALQCEVDA-------EQLLKG 851 Query: 473 AWAQLTG--------PLAVLKPDGNRFYLPKEHMTFSLITD---AWICPVTNKILDTAFK 521 W L + G + + E + ++D + C + + + + Sbjct: 852 VWEFLVRRETPVDWLKSSTESGLGQVYQVDHECLRLRWVSDEWPVYQCRICRRTAPFSVR 911 Query: 522 GLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLI 581 G+ P L E D Sbjct: 912 GVCPALGCDGVLERFVPPPLD--------------------------------------- 932 Query: 582 AQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEM 641 R + + + + EH+AQ + + + F G++N L+CSTT E+ Sbjct: 933 ---RDRDHYRALYRMMNAVP--LTVKEHTAQWVTTEAAAIQHEFVRGEVNTLSCSTTFEL 987 Query: 642 GVDTDRVMTLASRSQQATIPGPEWHLNDELVVRS----------LGYKTVELNEFILPAK 691 GVD + + R+ + + R K+ +L F P Sbjct: 988 GVDVGELQAVMLRNMPPST--ANYLQRAGRAGRRSGAAALVVTYATRKSHDLTRFNEPEV 1045 Query: 692 ATNAVERVKDIQIHK 706 + R + + Sbjct: 1046 MMSGQVRAPYVPLTN 1060 >UniRef50_A9KIX6 DEAD/DEAH box helicase domain protein n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KIX6_CLOPH Length = 1759 Score = 232 bits (590), Expect = 6e-59, Method: Composition-based stats. Identities = 127/938 (13%), Positives = 269/938 (28%), Gaps = 199/938 (21%) Query: 7 QNCD-CGSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSL--QDEVPVEHDATE 63 + C C +YE+ C ++ A D EN G EF +++ E Sbjct: 554 ETCPECNGRMYELMMDRRCGTLYIRAFDD----QNIENYDGLEFLWSRNNQIMKEPKEIH 609 Query: 64 EKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIIND--------- 114 + E + ++ T+ LD +T + + + Sbjct: 610 LWIMPEGRIDFFKLGKKTGKAKKNSTVGYLDSKTGLLFRDESHAGDEGYLKVLISSTFNE 669 Query: 115 ---IEQVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGP 171 + CG L G NIV E D S+ Sbjct: 670 DVLAFTFNTCPNCG----RDHNKITPFLTRGNEPFANIVKEQFEVQPDIKSE-------- 717 Query: 172 DSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANA 231 L G++++ F+DSRQ A +A M ++ R ++ Q+ ++ + Sbjct: 718 --LKNGGKKVLLFSDSRQRAATLARDMTIASDGDSGRQAIFMA----QKLLDDSSGESTI 771 Query: 232 DLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWT 291 DL A + + + E ++ + ++ + + Sbjct: 772 DLLYYAF-----------LKVVYDNKLSFFYGKEKEMFKRQLKKYEELYSSRTIRK--FD 818 Query: 292 EMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQG 351 + + + D+ +L N N G L++++L + ++ E Sbjct: 819 RLKSNIGNPPDMFYQLLLKNISDSYRSLNNLG----LAQVVLADQG-------DAGE--- 864 Query: 352 LVQVGYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFT--QLDDELKNWIG 409 ++ YQ LEK+ G++ D + + + ++ D++++ Sbjct: 865 --EIEYQILEKVENLT------GISGTDVYSIYNTWIQYLIVNKIAIFPEIGDDVRD--- 913 Query: 410 SRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTW 469 + E ++ ++P+ +I Sbjct: 914 ------SILAYERGRFGIDEIAKFPEF----------------LNDIIKEKYDESVIQAL 951 Query: 470 LKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDA-WI-CPVTNKILDTAFKGLTPYL 527 + + +T L + NR YL + ++ WI C I G Y Sbjct: 952 IDR-FDDITQILQSPGRNHNRRYLFGTRLILKAAENSEWIKCDRCAGISTYTLWGHCIYC 1010 Query: 528 PTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSE 587 + + + ++ + P+I L E Sbjct: 1011 GSTEYVRKVDDEHFKRYLLWR-----------------------------KPVIDALNRE 1041 Query: 588 NVWTDINDRVVEGGFYYRTAEHSAQQSSERL--------QSYEKMFK-------NGQLNV 632 + T EH+AQ S + + YE F+ ++V Sbjct: 1042 RI------------HNIITEEHTAQLSYKDNKKDVWGTTEKYELAFRNITLNEDEEPIDV 1089 Query: 633 LNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLND----------ELVVRSLGYKTVE 682 L+C+TTME+G+D + ++ R+ + +V + Sbjct: 1090 LSCTTTMEVGIDIGSLTSVGLRNVPP--MRENYQQRAGRAGRAGAAVSSIVTYTENGPHD 1147 Query: 683 LNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGV 742 F P + + + R I F F ++ Sbjct: 1148 SWYFKHPEQIISGIPRTPWIDDKNT-KLIRRHINLIFLQEFFYTIRSGLDVIRTLDFFS- 1205 Query: 743 HYTDRYLQNPVALALLGSILRPLKTKL---TDGAEVTLDTLFKDKDRPGNRPFHDWMSIA 799 Y D+Y LR LK ++ + V + T + +IA Sbjct: 1206 -YEDKYN--------YIEFLRWLKERIPMSYERQRVLIPTGDFNWKGYYKEISKTLENIA 1256 Query: 800 DFQDFADQWFAAALGRPVELTVFDSPRDIPHHRKLTVTFEDGQVLKIRFDQG-MGYWRIN 858 D D A F T + R + V F +G + F + + +W + Sbjct: 1257 DKVDEAPFIFEQ--------TSRSDENESDSVRLIDVLFSEGVLPNYSFPRNIVHFWIED 1308 Query: 859 FSSQWHYFDFRDDVSFQLV-KMAQACKEGNVANSEESW 895 + ++ + +++ ++ +++++ Sbjct: 1309 LYG-----NVKESPERSVDIALSEYAPGRSLVVNKQTY 1341 >UniRef50_D0HYY2 Helicase n=3 Tax=Proteobacteria RepID=D0HYY2_VIBCH Length = 1831 Score = 231 bits (589), Expect = 7e-59, Method: Composition-based stats. Identities = 108/742 (14%), Positives = 207/742 (27%), Gaps = 164/742 (22%) Query: 1 MYVNQRQNCDC--GSPVYEVAFCNDCNEPHLLARDKKGKLVQW--------ENKGGDEFS 50 ++ R+ CDC S VYE+ DC L W EN D Sbjct: 582 LHTKPRRQCDCLGKSRVYELFTHRDCGAAFLRGYVSSDLNFIWHEANGPLTENGSLDLVP 641 Query: 51 LQDEVPVEHDATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPL 110 + V + E +I GY R++ + + + Sbjct: 642 IDILVEDKVHPRGRYREMWLHMSSGKLIDTCPLDSNGY---------RKVFIPDRLATGE 692 Query: 111 IINDIEQVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVG 170 + E + G + + + + ++D Sbjct: 693 PLLFDECPVCMRNTSLSNGESSKIMDHVTKGEAPFTALVRTQMSNQAPNRSADAK----- 747 Query: 171 PDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNAN 230 P GR+++ F+D RQ AR+A + ++ E R ++ L+ + + S P N Sbjct: 748 ---HPNGGRKVLIFSDGRQKAARLARDIPRDIELDVYRQAI--ALACVRLRECSKEPRPN 802 Query: 231 ADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTW 290 L A + + + + PD KL A+ E Sbjct: 803 NSL----YLAFLSVLSEHDLQMFDGPDALKLIAARNEFSRDYG----------------- 841 Query: 291 TEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQ 350 ++ L++ + P + + L ++L + T Sbjct: 842 GDLEEALEDNFE-------------PSEPPPSRYKVALLKLLCGTYYSLIGT------TV 882 Query: 351 GLVQVGYQGLEKIHKSPLHWQEKGLTLDDWR--DFLKVTLDHYVRESNFTQLDDELKNWI 408 G V+ K + +++ KGL L D +D +R D + + Sbjct: 883 GFVE---PSKAKFKRLVNNFKSKGLGLSDSDVSALSVAWIDSQLR---AFSFDSSID--L 934 Query: 409 GSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINT 468 R+ + P G L + + TI+ + + Sbjct: 935 HLRYKAASYYKP-------------TWGSRGRFERAFRDSLTQRLFW---SDNTIEEVES 978 Query: 469 WLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLP 528 +E L P+ + H+ + C T +P Sbjct: 979 VFREQLTLEQDNTFFLSPNSLVINIDLNHI-------WYQCSDC-----------TSLMP 1020 Query: 529 THISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSEN 588 + + +T +A LD + Y D L+ + R Sbjct: 1021 IVLKEDICVSCGSNTAIA----------LDPRSDTYINARKGFWRAPVEDALVNRTR--- 1067 Query: 589 VWTDINDRVVEGGFYYRTAEHSAQQSSERL-------QSYEKMFKN-------GQLNVLN 634 EH+AQ S+ + YE F++ ++VL+ Sbjct: 1068 ------------LSTLSVEEHTAQLSNRDRSSVHSTTELYELRFQDVLIDSDSRPIDVLS 1115 Query: 635 CSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSL----------GYKTVELN 684 C+TTME+GVD + ++ R+ + R + + Sbjct: 1116 CTTTMEVGVDIGSLTAVSLRNVPPQRE--NYQQRAGRAGRRGSSVSTVITYCQNGPHDSH 1173 Query: 685 EFILPAKATNAVERVKDIQIHK 706 F+ P R ++++ Sbjct: 1174 YFLNPHNIVAGPPRTPEVKVDN 1195 >UniRef50_B4V8K6 DEAD/DEAH box helicase domain containing protein n=1 Tax=Streptomyces sp. Mg1 RepID=B4V8K6_9ACTO Length = 1763 Score = 230 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 92/668 (13%), Positives = 186/668 (27%), Gaps = 92/668 (13%) Query: 226 APNANADLEKLAARAKQAREQAEEYRSWGM-PDQAKLSQAQAEQLEQAYQAATGGKAATI 284 D KLA ++ R A S + + + ++ + + Sbjct: 582 EQTRGKDFAKLATLDQEGRSSATSLISASVVKSLKAVPEEALDKEARKLLTFVDNRQDAS 641 Query: 285 LVSRTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRT 344 L + + + V + R + L+ P E R Sbjct: 642 LQAGHFNDFVQITQLRGALYRAALEAGEDGIPHE-----------------ELATRVG-- 682 Query: 345 NSLETQGLVQVGYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDEL 404 E L V Y G ++ +P + TL D F + L+ Sbjct: 683 ---EALALGLVDYTGESEL--APSIARAAAKTLRDVIAF-----------RLYLDLERGW 726 Query: 405 KNWIGSRFSSKFVRNPESKDPE--DNQNRRW----PQIRNGNVSHRLAKLLMLGAGFKTV 458 + + + + +D + + RW ++R + + R + L + Sbjct: 727 RITM-PNLEQTGLLEIDYEDLDWVAAKQDRWDGTHEKLRTADSALRAEIMKALLNEMRRS 785 Query: 459 NAAT----IDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDA-------- 506 A D + + + +L P + D + H + + + Sbjct: 786 LAIDVSYFRDDFDALQRASEERLVDPWVLSASDRPKVGTAYPHPSGKGMDRSALFLSARG 845 Query: 507 ----WICPVTNKI----LDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLD 558 ++C K D + L + A + P + Sbjct: 846 KFGKYLCRADRKFKELDTDELQLVIEQLLKVLAKAGLVKEVSEAPQRAGRFRRPTGPAMI 905 Query: 559 RSQEDYAEGLAKAR--DWVSHDPLIAQL------RSENVWTDINDRVVEGGFYYRTAEHS 610 + + +A + +HDPL R + ++ EH+ Sbjct: 906 GYRVAAQSLVWRAGKGETGTHDPLTRTYQSGDGPRVNTFFRELYKDAAGALAGLFAREHT 965 Query: 611 AQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIP--------G 662 AQ S + + E+ F+ +L +L CS TME+GVD + + R+ T Sbjct: 966 AQVSPQEREQREEAFRKAELKLLYCSPTMELGVDISSLNAVMMRNVPPTPANYAQRSGRA 1025 Query: 663 PEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDV 722 + + + F + + + + + S Q W Sbjct: 1026 GRSGQPALVTTYCATGNSHDQYYFRRSERMVAGAVAPPRLDLANE-DLVRSHL-QGIW-- 1081 Query: 723 LFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKTKLTDGAEVT----LD 778 + + + + + V Y D + L L IL K V + Sbjct: 1082 IAEAGLKLGRAIPD--VLDVSYPDTGERPAPDLNLHPEILAASLDKDAQRRTVDASQRVL 1139 Query: 779 TLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVELTVFD-SPRDIPHHRKLTVT 837 + +W I D + F A R +L + I + R+L + Sbjct: 1140 GPLLPDFADTTWWYDEW--IQDQVRTVPERFNRAFDRWRKLFTSALDDQFIQNRRRLDYS 1197 Query: 838 FEDGQVLK 845 +G ++ Sbjct: 1198 LTEGDRIR 1205 Score = 89.8 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 46/335 (13%), Positives = 84/335 (25%), Gaps = 20/335 (5%) Query: 17 EVAFCNDCNEPHLLAR--DKKGKLVQWENKG--------GDEFSLQDEVPVEHDATEEKV 66 +AFC +C + +L +K G++ + GD + D T+ V Sbjct: 458 PLAFCRECGQEYLTVWRTEKDGEVRYEARRDTMATGGRQGDGYLYVDHDRPWPSTTQYAV 517 Query: 67 EKENSFQPPLIIAAGETS--EAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCSASGC 124 + + L + + Y + T I C Sbjct: 518 DDRRLPESWLELDDKGQEVVKKTYRDRVPRAITVDPRGIEGQGDLQAAFIPSPFLFCLHC 577 Query: 125 GYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLITF 184 G + L + +++ + E L R+L+TF Sbjct: 578 GVAYEQTRGKDFAKLATLDQEGRSSATSLISASVVKSLKAVPEEA----LDKEARKLLTF 633 Query: 185 TDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARAKQAR 244 D+RQ + A + ++LRG++ A E LA Sbjct: 634 VDNRQDASLQAGHFNDFVQITQLRGALYRAALEAGEDGIPHEELATRVGEALALGLVDYT 693 Query: 245 EQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERADIR 304 ++E AK + L T ++ E D Sbjct: 694 GESE-LAPSIARAAAKTLRDVIAFRLYLDLERGWRITMPNLEQ---TGLLEIDYEDLDWV 749 Query: 305 GPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMR 339 ++ + L E R Sbjct: 750 AAKQDRWDGTHEKLRTADSALRAEIMKALLNEMRR 784 >UniRef50_C6BED1 DEAD/DEAH box helicase domain protein n=2 Tax=Betaproteobacteria RepID=C6BED1_RALP1 Length = 1770 Score = 228 bits (580), Expect = 8e-58, Method: Composition-based stats. Identities = 114/857 (13%), Positives = 218/857 (25%), Gaps = 156/857 (18%) Query: 13 SPVYEVAFCNDCNEPHLLARDK---KGKLVQWENKGGDEFSLQDE-------VPVEHDAT 62 ++ + FC +C + + D+ G++ + +E + +DE +P Sbjct: 455 RRLFALHFCRECGQEYAPVWDESVAGGRIFN--PRSIEERTHEDEDIKSGYFMPDTTGIW 512 Query: 63 EEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCSAS 122 ++ +++ ++ Y ++ + Sbjct: 513 DDTLDRYPETWLEQKKDGDLKLKSNYRKRQPQPVRVDATGQHVADGTPGWYIPGSFGFCL 572 Query: 123 GCGY-RGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRL 181 CG +GK+ R L G + T+L E L +++ Sbjct: 573 NCGVVHQTAGKESLRLTGLSGE--GRSSATTMLTLSALRYLYEEDA-----QLKDEAKKV 625 Query: 182 ITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARAK 241 + FTD+RQ A +Q L+ + Q+ N + + Sbjct: 626 LGFTDNRQDAA-----LQVGHFNDFLQVLLQRAALLAAVEQSGGRLNEGEISHAVFSALG 680 Query: 242 QAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERA 301 R++ R+ M + A+ + Sbjct: 681 FDRDEPG-VRAEYMQEPEVKGNARR--------------------------------QVQ 707 Query: 302 DIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGLE 361 D+ + Y Y P +LE GLV + YQ ++ Sbjct: 708 DVMRAIFGYRVYFDLRRGWRFNNP--------------------NLEQLGLVHIEYQDID 747 Query: 362 KIHKSPLHWQEKGLTLDDW----RDFLKVTLDHYVRESNFT---QLDDELKNWIGSRFSS 414 K+ W + L L R L L +R+ LD + + + + Sbjct: 748 KLAADVSEWADAPLILQAASAAVRKRLLTLLFDAMRQGLCLASRFLDRTELDKLKTASFA 807 Query: 415 KFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAW 474 + E W I G + + + DI W Sbjct: 808 NLREPWGFTEDEAPVAANW-FITTGRPRDEDRRNIEYLVSGSARSKLGKDIKRA---STW 863 Query: 475 AQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFE 534 V + R P KI D ++ + L Sbjct: 864 Q------EVDQDGTKRDN-----------------PHAVKIKDDDYREIVAALLKAAKSY 900 Query: 535 HLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDIN 594 L +++ F ++L+ + + G K++ + L + Sbjct: 901 GLVVSEETEFGM------TGYQLNGTGLVWVLGGGKSKRAADDNAFFRSLY--GNIAGML 952 Query: 595 DRVVEGGFYYRTAEHSAQQSSERLQSYEKMFK------------NGQ----LNVLNCSTT 638 V F + EH+AQ E E F+ G+ L VL CS T Sbjct: 953 ANPVHRLFDFEAREHTAQVEQEDRLEREARFRFTQKDRNDWLNAKGKQLEWLPVLFCSPT 1012 Query: 639 MEMGVDTDRVMTLASRSQQATIP--------GPEWHLNDELVVRSLGYKTVELNEFILPA 690 ME+GVD + T+ R+ T ++ + F P Sbjct: 1013 MELGVDISSLNTVYLRNVPPTPANYAQRSGRAGRAGQPALVITYCAAQSPHDQYFFRDPV 1072 Query: 691 KATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQ 750 + + + + R + D Sbjct: 1073 RMVHGQVNPPTLDLAN-----------RELIQSHLHAIWLAETGKKLDKSVRGLLDMSEP 1121 Query: 751 NPVALALLGSIL-RPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWF 809 + K + + + + P++D A Q F Sbjct: 1122 AAPLTEEYRQAMDADAPQKRAHVRGLRVLGMLSSEFTSDKAPWYDEAFAEQVYRRAFQSF 1181 Query: 810 AAALGRPVELTVFDSPR 826 AL R +L + Sbjct: 1182 DHALDRWRDLFSATKRQ 1198 >UniRef50_Q4KCB1 Helicase n=3 Tax=Gammaproteobacteria RepID=Q4KCB1_PSEF5 Length = 1948 Score = 224 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 94/740 (12%), Positives = 216/740 (29%), Gaps = 143/740 (19%) Query: 12 GSPVYEVAFCNDCNEPHLLARDKKGKLV-----------------------QWENKGGDE 48 G ++E+ +C C + + + + +++ DE Sbjct: 637 GHRLFELLYCEACGDLFVGGQRGQSSGSMNATELLPSAANLEHLPERPGAEYYDDMTLDE 696 Query: 49 FSLQDEVPVE---HDATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINN 105 F++ + D ++ E + I+ GE ++ G L QT+ ++ Sbjct: 697 FAVFWPRRGDWIGSDKGYDQWEPAHLNPDTGIVEIGEIAKEGNIAGYLYYQTK--AAVSK 754 Query: 106 DSIPLIINDIEQVCSASGCGYRG------MSGKQPFRRALLGGPFYVTNIVPTVLEYCQD 159 D Q CG + P R G + + E Sbjct: 755 DKERSTQQPSAQPFCCPKCGTDYSNRPDTNRSRSPIRAFRTGVTKSSQLVATELFELLHA 814 Query: 160 FTSDEGKEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQ 219 ++ + I F+DSRQ A A+ +++ R R +V + Sbjct: 815 IGAE---------------PKGIVFSDSRQDAAAQAMEIERLHLRDLRREVLVTAARSYV 859 Query: 220 RTQTSTAPNANADLEKLAARAKQAREQAEEYRSWGMPDQAKL---SQAQAEQLEQAYQAA 276 + + + +E+L +A+ A ++ E R + + + + + +L++ + Sbjct: 860 KDASIEVLTSKEIIERLI-KAETAGDKDEVIRLSELLKKQTVACGPKTRKVKLDKLLEFG 918 Query: 277 TGGKAATILVSRTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFRE 336 G I L F +NG + L + + Sbjct: 919 NDGSIGRITAELV------RLGISPYKHSSSNDAKELPWYREFEKNGDLIAYDHTLSYTQ 972 Query: 337 FMRRPKRTNSLETQGLVQVGYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESN 396 + K +V+ Y+ ++ + + + + L + + +D Sbjct: 973 TVGLNKD--------IVEGQYELIDDVIFANTFFALEETGL----AYPCLPMD------- 1013 Query: 397 FTQLDDELKNWIGSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFK 456 + D L W+ R + R +++ + N+ + W + +V++ K + + Sbjct: 1014 --EDDQALDAWL--RVFASAYRVKDNRYFDKNKVKLWQK--GPDVTNGRIKKVARALYGE 1067 Query: 457 TVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTF-SLITDAWICPVTNKI 515 T + + G L G F + K + D W C ++ Sbjct: 1068 TRYGDELTRV-----------LGEFERLGHRGGLFNIGKLALKVTEPGDDFWRCSNCERV 1116 Query: 516 -----LDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAK 570 L + + P E L + + ++ + Sbjct: 1117 HLHRGLGVCTRCVAPLHEPSGKVEALWETNFLGRRIVRGE----------RDGVGRFRLR 1166 Query: 571 ARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQL 630 + D +DR+ + + + + EK+ ++ Sbjct: 1167 VEEL------------TGQTDDFSDRLRKFKGIFV----------DDVSELEKL--ASEI 1202 Query: 631 NVLNCSTTMEMGVDTDRVMTLASRSQQAT--------IPGPEWHLNDELVVRSLGYKTVE 682 ++L+ +TTME+G+D + T+ + VV ++ + Sbjct: 1203 DMLSVTTTMEVGIDIGALQTVYQANMPPQRFNYQQRVGRAGRRGQAFSFVVTFCRGRSHD 1262 Query: 683 LNEFILPAKATNAVERVKDI 702 F P T + Sbjct: 1263 AYYFAHPQAITGDPPPPPFL 1282 >UniRef50_B9B1G2 Helicase n=1 Tax=Burkholderia multivorans CGD1 RepID=B9B1G2_9BURK Length = 1968 Score = 218 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 95/755 (12%), Positives = 202/755 (26%), Gaps = 156/755 (20%) Query: 6 RQNCDCG--SPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHDATE 63 +C+ G ++E+ +C C E + R E+ E L +E Sbjct: 666 HASCNDGETRRLFELIYCEACGELFVGGRRNSD-----EDSVTTEL-LSTAPNLEQLPES 719 Query: 64 EKVEKENSFQPPLII---------AAGETSEAGYTLQRLDRQT---------------RR 99 + GET + LD + R Sbjct: 720 AANTNYETLSYSQFAIFWPCRNEPKDGETDGEAWNPATLDTRNAVVTRAERHETTSLPGR 779 Query: 100 IGVINNDSIPLIINDIEQVCSASGCGYRGMSG------KQPFRRALLGGPFYVTNIVPTV 153 + IN + + CG + P R G + + Sbjct: 780 LFYINPGTGSVHQPGSASPRCCPACGTDYSRRKPNMGAQSPLRSFRTGFAKSSQLLATEL 839 Query: 154 LEYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVE 213 + G + I F+DSRQ AR A+ +++ + R +VE Sbjct: 840 FSAL---------------RVSGGAAKSIVFSDSRQDAARAALDIERRHHQDTRRQLLVE 884 Query: 214 ILSWHQRTQTSTAPNANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAY 273 L + S+ + +++ A + +A Q + ++ E Sbjct: 885 SLRAVAAARPSSQQLRDMEVQLQQAVEARNFAEAGRLGQDIARAQQAVDASRVALSEVIE 944 Query: 274 QAATGGKAATILVSRTWTEM---------VNELKERADIRGPVLQYNHYLKPEVFNENG- 323 + G R E+ + + + ++ KPE + Sbjct: 945 PIVSAGGNELRSYLRRHVELGIHPTDAAGIELIAQEP-WYKWIVPSGASGKPEWPAHSES 1003 Query: 324 GPLKLSEMLLFRE------FMRRPKRTNSLETQGLVQVGYQGLEKIHKSPLHWQEKGLTL 377 G + + E + K +LE G +GY + + Sbjct: 1004 GAAGQARAYIRDEQRPLVYEILFSKTYFALEETG---IGYPSMTATQTPESDRLD----- 1055 Query: 378 DDWRDFLKVTLD-HYVRESNFTQLDDELKNWIGSRFSSKFVRNPESKDPEDNQNRRWPQI 436 +L+V D + V + + + + + P+ + R+ + Sbjct: 1056 ----AYLRVFADAYRVAGNKWFRDPANIDT--------------AHQFPKKGRIYRFAK- 1096 Query: 437 RNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKE 496 + S + L +A I+ L+G + G+ +Y Sbjct: 1097 --ASASSNPIEELDEILKRFGAHAHAHGIVE---------LSGLYVRMSSSGDPYYRCDN 1145 Query: 497 HMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWK 556 L C + L +G+ + + TM W Sbjct: 1146 CGRVHLHRGTAFCTRCFEPLPVQKQGI-------------VDDLWKANFLARRTMRSGWG 1192 Query: 557 LDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSE 616 + + + E L +R+ + + Sbjct: 1193 QESAFRLHCEEL------------------TGQTGSPAERLRSFKGIF--------VNGG 1226 Query: 617 RLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQAT--------IPGPEWHLN 668 ++E + ++++L+ +TTME+G+D + + + Sbjct: 1227 TSDAFELYRRAEEIDLLSVTTTMEVGIDIGALQAVYQANMPPQRFNYQQRVGRAGRRGQA 1286 Query: 669 DELVVRSLGYKTVELNEFILPAKATNAVERVKDIQ 703 +V+ ++ +L+ F P + T V + Sbjct: 1287 FSVVLTLCRSRSHDLHYFRNPERITGDVPPPPFLT 1321 >UniRef50_A1W4A0 DEAD/DEAH box helicase domain protein n=4 Tax=Proteobacteria RepID=A1W4A0_ACISJ Length = 1765 Score = 217 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 124/833 (14%), Positives = 220/833 (26%), Gaps = 203/833 (24%) Query: 12 GSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHDATEEKVEKENS 71 G +Y FC DC + +L + + D+ S D +E+ Sbjct: 455 GVHLYPAHFCRDCGQEYLPIWQSGQHPTIYLPREIDDVS--------ADDSEDASYGFLC 506 Query: 72 FQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLI---------------INDIE 116 P G+ + T L R +I +IP Sbjct: 507 PVNPKQPYTGQLEDLPETWLDLSRNEPKIKPAYKKAIPYHVAVDPQGHEGAGEAFWFIPG 566 Query: 117 QVCSASGCGY-RGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLP 175 + CG GK R + L G + T++ P Sbjct: 567 KFRFCLSCGTVHEAHGKDANRLSSLSGE--GRSSATTMIALSALQQLFALPNPAHGQPDP 624 Query: 176 GRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEK 235 R+L+ FTD+RQ A A LR ++ L + + D E+ Sbjct: 625 ---RKLLGFTDNRQDAALQAGHFNDFIFLLTLRAGLIGALQDN---------SGVLDEEQ 672 Query: 236 LAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVN 295 LA +A +G DQ L + + A T+ + + Sbjct: 673 LAEAVFKAL-------GFGQVDQGTLVEYLRS--PKLMGPARQQAQRTLRFIIAYRLL-- 721 Query: 296 ELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQV 355 + + Y P +L+ GL+ + Sbjct: 722 ---------RDLRRGWRYNNP-----------------------------NLDQLGLLSI 743 Query: 356 GYQGLEKIHKSPLHWQEK----GLTLDDWRDFLKVTLDHYVRESNFTQ------LDDELK 405 Y+GL++ + + L D + DH +R + ++ + Sbjct: 744 RYRGLDEFCADTGAFAKNKVLAKLKPADRARLCNLLFDH-LRSHLCLETRYLDPVEHDKA 802 Query: 406 NWIGSRFSSKFVRNPESKDPEDNQNRRWPQIR-----------NGNVSHRLAKLLMLGAG 454 G + ++ + E + + G RL +L+ + Sbjct: 803 RTSGHTYLTERWAFAPDEKLETGRYLILGKRPEYKGKPRADLVTGGPRSRLLRLVKTSSL 862 Query: 455 FKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNK 514 ++ W W +L L+ A C V Sbjct: 863 WQDS--VFATETKHWKDTEWVELVQD---------------------LLHAASNCYVQKY 899 Query: 515 ILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDW 574 +DT G W+L+ + D+ + +D Sbjct: 900 AIDTDLAG--------------------------------WRLNAAALDWCLTAEQPQD- 926 Query: 575 VSHDPLIAQLRSENVWT--DINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNG---- 628 + I E + D+ F + EH+AQ + R Q E+ F+ Sbjct: 927 --ENSRINTFFRELYLSIADLLRLPSHPLFEFEAQEHTAQVDAPRRQLLEQRFRYTDKDR 984 Query: 629 --------------QLNVLNCSTTMEMGVDTDRVMTLASRSQQATIP--------GPEWH 666 +L V+ CS TME+GVD + T+ R+ T Sbjct: 985 NDWAQNPAHEAPLERLPVMFCSPTMELGVDISALNTVYLRNMPPTPANYAQRSGRAGRSG 1044 Query: 667 LNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWD----V 722 +V + F + V R + + + + S + Sbjct: 1045 QQALVVTYCAALSPHDQWFFHHANDMVHGVVRAPTLDLANR-DLVESHLQAVWLASTQMK 1103 Query: 723 LFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSI---LRPLKTKLTDG 772 L L + Y D + V L S + L+ +L D Sbjct: 1104 LDPSIAPMLDLDQEGKPLKPAYLDAFTTPDVRARALSSAHGVIEQLQAELNDS 1156 >UniRef50_Q0AZK9 Helicase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AZK9_SYNWW Length = 1578 Score = 217 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 97/725 (13%), Positives = 193/725 (26%), Gaps = 152/725 (20%) Query: 10 DCGSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHDATEEKVEKE 69 DCG YE++FC++CN ++ + + G LVQ D Sbjct: 475 DCGYKAYEISFCHNCNALFIIGQKEDGHLVQKNKFNAD---------------------- 512 Query: 70 NSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCSASGCGYRGM 129 D + + + + + CG Sbjct: 513 -----------------------YDPEVYLLDGDYEGDDNDEDEEAKSYIVCAKCGAIKR 549 Query: 130 SGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQ 189 S G Y I +G + P T + Q Sbjct: 550 STSIDDLTCGHGKENYNRLI-------------KVKDKGTKLHTCPCCH------TINTQ 590 Query: 190 GTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARAKQAREQAEE 249 + + EA + + ++ L + T+ + + +K+ E+ E Sbjct: 591 RSIMRPYFLGNEASTAVIATALYNELPNTKITKETVKFEDD----FFGESSKKIIEKREH 646 Query: 250 YRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERADIRGPVLQ 309 + ++ A + L++R + + + V Sbjct: 647 IVKQFLT--FSDNRQAAAFFASYLETTYRDNLVKRLMTRVCEDNAQAMASGISLENFVDH 704 Query: 310 YNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGL----VQVGYQGLEKIHK 365 + K + + + +E + K NSL+ +G+ V + K+ Sbjct: 705 LEAIMAEYRIYAQDNRHKEAWIAVAKETINY-KAKNSLQNKGILFFDVDIDMPANNKL-- 761 Query: 366 SPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFV-RNPESKD 424 L+ + D K+ ++++ + + L R + + + Sbjct: 762 --------NLSAHETTDLFKIFARYFIK-NAAIKFPISLTRADDQRLTFNGITIGFDLSS 812 Query: 425 PEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVL 484 + + W + + KLL K I L+ W L + Sbjct: 813 SSKSYIQAW--VPAAGRENIRTKLLQ-----KIFPDKDAAFIYKLLESLWYALNTKGIIS 865 Query: 485 KPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTF 544 D +F L + + + C I + + P Sbjct: 866 YYDE-KFMLSSSAIKVKAVQVLYKCNECKTITPYNIQNICPNPKCTGD------------ 912 Query: 545 VAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYY 604 + + ++ + + Sbjct: 913 ------------------------------LQTFDFKKTIHRDHYYNVFRN---LKIDDL 939 Query: 605 RTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPE 664 EH+AQ SE+ +Y+ FKN ++NVL+CSTT EMGVD + T+ R+ + Sbjct: 940 IAKEHTAQLGSEKAYTYQNDFKNEKINVLSCSTTFEMGVDVGSLETVFMRNMPPSP--AN 997 Query: 665 WHLNDELVVRS----------LGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQ 714 + RS + +LN F P + + + Sbjct: 998 YAQRAGRAGRSLKSAAYSLTYCPNNSHDLNYFKQPLSMIKGTIQPPAFNVSNEKIVLRHI 1057 Query: 715 FGQRF 719 F F Sbjct: 1058 FASAF 1062 >UniRef50_C6CEX4 DEAD/DEAH box helicase domain protein n=3 Tax=Gammaproteobacteria RepID=C6CEX4_DICZE Length = 1948 Score = 216 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 96/763 (12%), Positives = 206/763 (26%), Gaps = 181/763 (23%) Query: 12 GSPVYEVAFCNDCNEPHLLAR--DKKGKLVQWENKGGDEFSLQDEVPVEHDAT------- 62 G ++E+ +C C + L + GK ++ + +L + E+ Sbjct: 637 GRRLFEMLYCEACGDLLLGGQKGQNHGKTIELLPSATNLENLPERPGAEYYDDMTLEEFA 696 Query: 63 ---------------EEKVEKENSFQPPLIIAAGETSEAGYTLQ--RLDRQTRRIGVINN 105 E+ + + ++ T + I Sbjct: 697 VFWPVDIAGRPPVGCEKGWDVWEKAALNPVTGIVTIAQETSTTNTDAVRGYLYFQNPIKP 756 Query: 106 DSIPLIINDIEQVCSASGCG------YRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQD 159 Q CG + P R G + + E Sbjct: 757 KKGEPAKTPSAQPFCCPNCGIDYSSRPASNRSRTPIRAFRTGVTKSSQLVATELFELLHA 816 Query: 160 FTSDEGKEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQ 219 ++ + I F+DSRQ A MA+ +++ R R +V S Sbjct: 817 IGAE---------------AKSIVFSDSRQDAASMALEIERLHLRDLRREILV-AASRAM 860 Query: 220 RTQTSTAPNANADLEKLAARAKQAREQAEEYRSWGMPDQA---------------KLSQA 264 + + ++ D+E A+AKQ+ + E R + KL ++ Sbjct: 861 IKEAESGYISDEDIEDRKAKAKQSGDYDEYIRLHDLQKSQSGITELCKYRRIKIDKLLES 920 Query: 265 QAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERADIR--GPVLQYNHYLKPEVFN-- 320 + + + + G + E + + I+ G + E Sbjct: 921 EGDSIGRITSELVGLGISPYKYRSNSDENDSAVWHTNFIKEGGTIRFSERLPSHERMKIK 980 Query: 321 ---ENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGLEKIHKSPLHWQEKGLTL 377 + +++ F +LE GL Y + P + Sbjct: 981 TKISYDQSELIDDVIFANTFF-------ALEETGLA---YPCISDKDDMPE--------I 1022 Query: 378 DDWRDFLKVTL-DHYVRESNFTQLDDELKNWIGSRFSSKFVRNPESKDPEDNQNRRWPQI 436 D W L+V + V+E+ + ++G KD E + +R ++ Sbjct: 1023 DAW---LRVFSGAYRVKENKYFDASRTRDWYVG-------------KDVEKEKVKRVARV 1066 Query: 437 RNG--NVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLP 494 G L ++L + + +IN + +L Sbjct: 1067 LFGDSGYQDGLTRILNQLSLLE----HKAGLINI--------------------GKLFLK 1102 Query: 495 KEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEI 554 W C +I L + + V ++ Sbjct: 1103 ISK----PGDHYWQCGKCGRI---------------------HLHLGFKYCTRCVNALDL 1137 Query: 555 WKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSE-----NVWTDINDRVVEGGFYYRTAEH 609 ++ + E R + + R D +DR+ + + Sbjct: 1138 EPSGIVEDLWEENFLGKRIVRGERDGVKRFRLNVEELTGQTDDFSDRLRKFKGIFV---- 1193 Query: 610 SAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQAT--------IP 661 +++ EK+ + ++++L +TTME+G+D + ++ + Sbjct: 1194 ------DKMSELEKL--DSEIDMLAVTTTMEVGIDIGSLQSVYQANMPPQRFNYQQRVGR 1245 Query: 662 GPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQI 704 V+ +T + F P T + + Sbjct: 1246 AGRRGQAFSFVITFCRGRTHDAYYFAHPHAITGDPPPPPFLAV 1288 >UniRef50_B5J454 DEAD/DEAH box helicase domain protein n=1 Tax=Octadecabacter antarcticus 307 RepID=B5J454_9RHOB Length = 1653 Score = 215 bits (547), Expect = 5e-54, Method: Composition-based stats. Identities = 115/750 (15%), Positives = 209/750 (27%), Gaps = 139/750 (18%) Query: 14 PVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHDATEEKVEKENSFQ 73 P YE+ C +C EP++ A G L +N G + D E+ E+ + Sbjct: 507 PAYEMFVCRNCGEPYVEAWQGAGNLSAVKNGG----PRHLLRLMPGDMAAEEEGDEDERE 562 Query: 74 PPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVC-SASGCGYRGMSGK 132 P ++ S LD + + + +D + S C R + Sbjct: 563 APTMLTFDPESGE-----VLDTDAPIGVQLEDVHLREDPDDGSRYLHRCSACNRRPARFQ 617 Query: 133 QPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQGTA 192 +P R G +LE + P GR L+TF+D+RQ A Sbjct: 618 EPVTRVRPGDEALAAVAAQALLEALP--------KAENGRDAPMGGRNLLTFSDNRQDAA 669 Query: 193 RMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARAKQAREQAEEYRS 252 A ++ + +R +++ +++ + T + + + + YR Sbjct: 670 FFAPFFERTSREQAIRAAMLYVVNRNGSTDIESLVGDV--------KRRLESDGLRLYRP 721 Query: 253 WGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERADIRGPVLQYNH 312 P + K G L + E+ K R + G L Sbjct: 722 GVEPAREK-----------------GENLRLRLKALIAAELTVFGKGRLSLEGFGLIGVD 764 Query: 313 YLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGLEKIHKSPLHWQE 372 Y + E+ L+ + + L Sbjct: 765 YKNIDRLTNGVAGEMPVELKLYAQ-------------------------PFCRHVLKLMR 799 Query: 373 KGLTLDDWRDFLKVTLDHYVRESNFTQLDDE--LKNWIGSRFSSKFVRNPESKDPEDNQN 430 + L W S L+DE R + + +P + Sbjct: 800 EHRALA-WEA------------SGMIDLEDESIWTRMANQRNRAMTL------EPNTRSS 840 Query: 431 RRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNR 490 + I GN ++R LL A K V A + I L + W + P + G Sbjct: 841 LAFSLIPAGNRANRFTTLLRKMANAKRV-AIDENQIRDILSKFWKIIEHPRMMTAKHGVG 899 Query: 491 FYLPKEHMTFSLI---TDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQ 547 L + + C G+ P + + + + Sbjct: 900 RGLKLDDDFLVRPGSEVSLYQCKKCGGRTQFDTAGVCPSMGCKGNLIEIDATER------ 953 Query: 548 KVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTA 607 AQL +N + R E Sbjct: 954 ----------------------------------AQLAKKNHYVV---RYHERPLMGIAR 976 Query: 608 EHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHL 667 EH+A + + E+ FK G+ N+L+C+TTMEMGVD + + ++ +I + Sbjct: 977 EHTAAIAGDVRARIEESFKTGETNLLSCTTTMEMGVDLGDLEAVLCKNVPPSI--SNYQQ 1034 Query: 668 NDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDH 727 R + L E + + P + Sbjct: 1035 RAGRAGRRAQVAPLVLTTSRSGRFDRAVFEEFSK-YLATKPGVPYLSLDNASFFQRHQVS 1093 Query: 728 EEAQSLMNNTRITGVHYTDRYLQNPVALAL 757 +++ + L++ + AL Sbjct: 1094 MLLARFLDHRLVNYTRNGAPRLRDVLGEAL 1123 >UniRef50_A9CY68 DEAD/DEAH box helicase domain protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9CY68_9RHIZ Length = 1848 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 104/786 (13%), Positives = 201/786 (25%), Gaps = 161/786 (20%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPH-------------LLARDKKGKLVQWENKGGD 47 MY CDCG+ V E+ C +C + L + K + + Sbjct: 569 MYSQPMDTCDCGARVLELFTCRNCGTAYGRAYTDDIDEPHDLWSEPGKPQRMASGESAPL 628 Query: 48 E--FSLQDEVPVEHDATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINN 105 E L +E E A + E P I + + +D N+ Sbjct: 629 EPIDLLLEESAREDVAEPADYDLETGQLNPNTIGPRTRTVFIRQGRLVD------AASND 682 Query: 106 DSIPLIINDIEQVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEG 165 D + + CG G+ + G ++ ++ Sbjct: 683 DDGGSAPEPPGKFVPCAVCGKTARFGRSYVQDHQTKGDQPFQALLTRQIQIQPPGPQ--- 739 Query: 166 KEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTST 225 P RGR+++ F+DSRQ AR+A +Q +ER LR ++ W Q + Sbjct: 740 ---EATRFAPLRGRKVLAFSDSRQVAARLAPNIQMYSERDSLRPLIISGFKWLQDQELLR 796 Query: 226 APNANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATIL 285 D + +L+ +L A + Sbjct: 797 RRLGLDD-----------------LFLGVLLASQRLNVRLRPELHGHENFDAEDIVAKAI 839 Query: 286 VSRTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTN 345 + V L D+ E LL R Sbjct: 840 NEGNLDDPVALLDLLDDVH--------------------ANSAPEALLGSMLTTLSDRFY 879 Query: 346 SLETQGLVQVGYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELK 405 +E L + + + L D+ + ++R N L Sbjct: 880 GMEALALASLCEKDRHRKKILDLPPISNLAETDEAK---LALARFWLRCWNGFSLAKMPG 936 Query: 406 NWIGSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDI 465 WI R +S R K+ + ++ + + + ++ Sbjct: 937 TWID-RPASDGYRVRSRKEKAKIEA----------INTVITEKAARKLFWD---QWHPEL 982 Query: 466 INTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTP 525 I+T+ K +G YL ++ D C Sbjct: 983 ISTFTKS-------------KEGGNRYLNGSELSLQFEGDWVHCTSCK------------ 1017 Query: 526 YLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLR 585 S +++ + ++ + AR P+ L+ Sbjct: 1018 ------SVHRPIPGHDRCLDCGNLSVDALDP-------DSDRVFLARKGFYRKPVTEALQ 1064 Query: 586 SENVWTDINDRVVEGGFYYRTAEHSAQQSS-------ERLQSYEKMF------------K 626 AEH+AQ ++ + + +E +F + Sbjct: 1065 EP----------PRQPMALIAAEHTAQLNAPQNEDVFSKAEEHELLFQDIALVGSSLRSR 1114 Query: 627 NGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRS----------L 676 + +++L+ +TTME+G+D + +A R+ + R Sbjct: 1115 STAIDILSSTTTMEVGIDLGALTGVALRNMPP--GRANYQQRAGRAGRRGNAVATVLAFG 1172 Query: 677 GYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNN 736 + + + F P + + + D Sbjct: 1173 SADSHDEHYFSRPDEMIRGKVIDPKLTLDNP-EIARRHIRAYLLQGYHQDRLPTVDASQP 1231 Query: 737 TRITGV 742 + V Sbjct: 1232 HDLFSV 1237 >UniRef50_A8KF74 Dead/deah box helicase domain protein n=2 Tax=pseudomallei group RepID=A8KF74_BURPS Length = 1787 Score = 213 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 102/742 (13%), Positives = 178/742 (23%), Gaps = 167/742 (22%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLAR---DKKGKLVQWENKGGDEFSLQDEVPV 57 +Y C+CG+ VYEV DC + L + G E Sbjct: 589 LYSEPMLKCECGARVYEVLTHRDCGAAFIRGYIQDQFGMFLWHQPSSGLWGTGGLMEAHF 648 Query: 58 EHDATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSI--PLIINDI 115 + + + T T + + ++ D + Sbjct: 649 LVEVDRRAAGTHGRMEGAQVWLHKATGRLVLTPPAEAELGQYLALLRPDGAVPISGQQAL 708 Query: 116 EQVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLP 175 C C R +G G +V T +E DS P Sbjct: 709 SFNCECPVCTRRWRTGSTKIMDLATKGEAPFAQLVRTQVELQPITH-------PKTDSSP 761 Query: 176 GRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEK 235 GR+ + F+D RQ AR+A + +E E R ++ Sbjct: 762 NGGRKSLLFSDGRQKAARLARDIPREIENDVFRQLLL----------------------- 798 Query: 236 LAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVN 295 LAA+ + + + A L + E+ + Sbjct: 799 LAAKELRGLGREATLGDHIYVALLHVLAKNALLLFDGADRERLQRDVLDHRRHYLGELRD 858 Query: 296 ELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQV 355 L E + P LL R SL L V Sbjct: 859 ALDESPPAKPP---------------------RFSSLLLRHLGSPFY---SLSALTLAHV 894 Query: 356 GYQG-LEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSS 414 L + + L ++ W +++ D Sbjct: 895 VPIARLRRQIVADLPGMDEAHLRAVWTAWIQSFA-----SDFAVDAD------------- 936 Query: 415 KFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAW 474 + RNG S R L L + Sbjct: 937 ---LPQGVRSQAAGYPIGGGLDRNGGFSARQQAFLRARV--------------PELDRIF 979 Query: 475 AQLTGPLAVLKPDGNRFYLPKEHMTFSL---ITDAWICPVTNKILDTAFKGLTPYLPTHI 531 LT L +P F++ + L D + C + + G P Sbjct: 980 DTLTALLCQARPGSPGFFIVPRFLALELASDQHDWYQCGQCATVSPVEWWGHCPNC---- 1035 Query: 532 SFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWT 591 LA V + + Sbjct: 1036 ------------------------------------LAGEVTAVRPGATQYLRARKAFFR 1059 Query: 592 DINDRVVEG---GFYYRTAEHSAQQSSER-------LQSYEKMFKN-------GQLNVLN 634 D + ++EG F EH+AQ S ++ +E+ F++ ++VL+ Sbjct: 1060 DPVNEILEGKASPFNLSVEEHTAQLSYRDVDDSTTTIEEFERRFRDILVERNDTSIDVLS 1119 Query: 635 CSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSL----------GYKTVELN 684 +TTME+G+D ++ + R+ + R + + Sbjct: 1120 STTTMEVGIDIGSLIAVGLRNVPP--LRQNYQQRAGRAGRRGSAVSTVVTYAQNSPHDNH 1177 Query: 685 EFILPAKATNAVERVKDIQIHK 706 F P + + + Sbjct: 1178 YFGNPEPIISGEPTLPGVDTAN 1199 >UniRef50_A8EC51 Probable ATP-dependent helicase Lhr n=2 Tax=pseudomallei group RepID=A8EC51_BURPS Length = 1755 Score = 213 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 119/879 (13%), Positives = 222/879 (25%), Gaps = 179/879 (20%) Query: 14 PVYEVAFCNDCNEPHLLAR-DKKGKLVQWENKGGD---------------------EFSL 51 +Y FC DC + + R + + + D E Sbjct: 447 RLYSTHFCRDCGQEYHPVRMRRDDSGWEVLGRDIDDMPKMRDDDTDVTDVEEDAIGERLG 506 Query: 52 QDEVPVEHDATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRI-GVINNDSIPL 110 D E + E+ + + I + T Q L+ + I G Sbjct: 507 FLLPLNLSDPIEFTGKVEDYPEAWIEITRHNEARFKRTHQHLEAERLSIQGNGRVGRGQD 566 Query: 111 IINDIEQVCSASGC-GYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGV 169 + + C G GK R + L + T+L + Sbjct: 567 VWFLPGKFRYCLRCRAVHGAQGKDSNRLSALSAE--GRSSATTLLTTSALRWMHGQPSIL 624 Query: 170 GPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNA 229 R+L++FTD+RQ A A S LRG++ L + Sbjct: 625 P------DKRKLLSFTDNRQDAALQAGHFNDFTFVSLLRGAIYRALVRADEVGLGDS--- 675 Query: 230 NADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRT 289 +L A + A + + P+++ + + R Sbjct: 676 -----ELGAAVRAALGFDQPLSATETPEESHRGEWM---------------QEPQSIGRN 715 Query: 290 WTEMVNELKERADIRGPV--LQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSL 347 + L+ R + Y P +L Sbjct: 716 LADAEEALRFVLAYRAWFDQRRGWRYTNP-----------------------------NL 746 Query: 348 ETQGLVQVGYQGLEKIHKSPLHWQEK----GLTLDDWRDFLKVTLDHYVRESNFTQLDDE 403 E GL++ Y GL+ + + + R+ L Y+R+ Sbjct: 747 EELGLLRADYSGLQAFCSEEARFDKAADLLRKATPEARERAFRCLFDYMRKGLAVDAAAL 806 Query: 404 LKNWIGSRF--SSKFVRNPESKDPEDNQNR-RWPQIRNGNVSHRLAKLLMLGAGFKTVNA 460 N + R + + +RNP E+ RW ++ N + K L A Sbjct: 807 DPNLLQQRKDEALRLLRNPWGIGREERLLGWRWLFLQPPNANALRGKDEELVLRGGLQTA 866 Query: 461 ATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAF 520 + N+ L W Q A L+ D + L M + +I Sbjct: 867 LGKSLRNSTL---WEQ--PAAANLRRDDYQTLLSA--MIRAAQDGGFI------------ 907 Query: 521 KGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPL 580 + ++ + + + D P Sbjct: 908 ---------------------------RRDEHTLFNVPGFRLNAGRVRFHLGDAPGVRPN 940 Query: 581 IAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQ----------- 629 + + + F EH+AQ E E F+ G+ Sbjct: 941 AFFKQQYQAIASMLGQKDRFLFGLEAREHTAQVDGELRALRESRFRFGKSEREALKDGEL 1000 Query: 630 -------------LNVLNCSTTMEMGVDTDRVMTLASRSQQATIP--------GPEWHLN 668 L ++ CS TME+GVD + + R+ T Sbjct: 1001 HDIAHKQGEPIRFLPLMFCSPTMELGVDISALNAVYLRNVPPTPANYVQRAGRAGRSGQA 1060 Query: 669 DELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHE 728 +V + F P + V + + + Q + S + + + Sbjct: 1061 ALVVTYCAARSPHDQYFFREPTAMVHGVVKAPLLDLANQ-DLIQSHLQAIWLAASRKELD 1119 Query: 729 EAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPG 788 + + I ++ + AL + T+ + + P Sbjct: 1120 -----SSISNIVDPGLPQLPVRAHIVEALGQETVTAEATRQAVNVLRMAEEHLTPERAP- 1173 Query: 789 NRPFHDWMSIADFQDFADQWFAAALGRPVELTVFDSPRD 827 + A + F A R +L + Sbjct: 1174 -WFTNRHAYAQMAIASAPEAFHRAFNRWRDLFTSAERQK 1211 >UniRef50_A1UB29 DEAD/DEAH box helicase domain protein n=2 Tax=Mycobacterium RepID=A1UB29_MYCSK Length = 1543 Score = 212 bits (539), Expect = 5e-53, Method: Composition-based stats. Identities = 106/718 (14%), Positives = 214/718 (29%), Gaps = 157/718 (21%) Query: 12 GSPVYEVAFCNDCNEPHLLAR-DKKGKLVQWENKGGDEFSLQDEVPVEHDATEEKVEKEN 70 G V+E C C HL + + + + + S+ V + D E E Sbjct: 469 GRAVFEFGTCTRCGAVHLAGELEHRDRREYFTPSKKADASVNWLVLADGDLDVVVDEDEA 528 Query: 71 SFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCSASGCGYRGMS 130 + + + + A T +RL ++ + A+ C Sbjct: 529 T-----LASDEPKNLADPTTRRLCTGCGQLTAAD----------------AARCATTNCR 567 Query: 131 GKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQG 190 Q ++ T + T SRQG Sbjct: 568 AGQML-----------------LVREHPRPTRIMSRCTECG-------------TQSRQG 597 Query: 191 TARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARAKQAREQAEEY 250 R+ R A + + ++ + L P A+ D ++ ++ Sbjct: 598 IRRL--RTDVNAAPAVVTTALYQQL-----------PEASGDAADNVGGGRKLLMFSDSR 644 Query: 251 RSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERADIRGPVLQY 310 ++ L + + LE+ Y T ++ +L Sbjct: 645 QAAAFAAP-YLDRTYSRMLERRYITEALRDPVAATSELTVGDL------------AILAR 691 Query: 311 NHYLKPEVFNENGGPLKLSEML---LFREFMRRPKRTNSLETQGLVQVGYQGLEKIHKSP 367 F+ G +++++ + + E M R SLE GL++V L + P Sbjct: 692 EKAQAAGHFDRRLGSIEIAQAVNQWISGELMTLETRQ-SLEGLGLMRV---ALRREPSVP 747 Query: 368 LH-WQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKF--VRNPESKD 424 L + GLT ++ + + VR + D + RF+ + VR + Sbjct: 748 LRGFTSLGLTEEEAWALMNELVK-TVRLQGAITVLDRVDI-KDERFAPRNTRVRMRSAGS 805 Query: 425 PEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQL-TGPLAV 483 Q W G + R+ L + + + + L+ W L +G V Sbjct: 806 DRARQVISWNPSGTGTTNGRITLLRKVF-----ESLSNKTPVEKVLEGCWRLLESGGFLV 860 Query: 484 LKPD---GNRFYLPKEHMTFSLIT--DAWICPVTNKILDTAFKGLTPYLPTHISFEHLTL 538 + D G + L +T + + + C + + + + P Sbjct: 861 AESDRVLGQVYQLDHSMLTVTNGANCEWYRCDTCRLLTAFSIRDVCP------------- 907 Query: 539 AQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVV 598 ++ ++ + E+ R N + + + Sbjct: 908 ---NSRCTGRLRLYEVPASG--------------------------RDSNHYRVVYQTMT 938 Query: 599 EGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQA 658 R EH+AQ ++ + ++ F G++NVL+CSTT E+GVD + ++ R+ Sbjct: 939 SAP--LRAHEHTAQWDAKTAANIQREFITGRVNVLSCSTTFELGVDVGDLQSVVMRNMPP 996 Query: 659 TIPGPEWHL----------NDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHK 706 + + LVV +L + P R+ + + Sbjct: 997 KT--ANYVQRAGRAGRRAASAALVVTYANRSAHDLAMYQDPNAMIAGRMRIPWVPVDN 1052 >UniRef50_A3V5V1 Probable ATP-dependent helicase Lhr n=1 Tax=Loktanella vestfoldensis SKA53 RepID=A3V5V1_9RHOB Length = 1757 Score = 212 bits (538), Expect = 6e-53, Method: Composition-based stats. Identities = 106/713 (14%), Positives = 200/713 (28%), Gaps = 84/713 (11%) Query: 155 EYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEI 214 E D DE G R +R ++ GTA +R + Sbjct: 533 EDYPDAWLDEKPNGEKRLKPTYRKKRAQQYSVRPDGTAHSGMRQ------AWFLPGKYRF 586 Query: 215 LSWHQRTQTSTAPNANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQ 274 + S+A D+ KLA+ + ++R A + + ++ + Sbjct: 587 CPSCRDVNISSAR----DMNKLASLSAESRSSATTILLSTVLRWMNSPDSTIQKHSRKLL 642 Query: 275 AATGGKAATILVSRTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLF 334 A T + L + + + V R I + Q + E L + L Sbjct: 643 AFTDNRQDAALQAGHFNDFVFVTMLRGAIINALRQAPGGVLEEANIGQEVQRSL-QFLAA 701 Query: 335 REFMRRPKRTNSLET--QGLVQVGYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYV 392 EF R + T +G + + + + + L W ++ L+ Sbjct: 702 SEFSNR-ADEWLVNTGVKGERRNDAEAILRQNLQHLFWVDQRRGWRYTNPNLEQLGLLVA 760 Query: 393 RESNFTQLDDELKNWIGSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLG 452 R + + ++ S + N ++ + + +R G L + Sbjct: 761 RYKYLDDIASDEGEFVASPI----LSNASPEERKRALKAVYDHMRKG---------LAVD 807 Query: 453 AG-FKTVNAATIDIINT-WLKEAWAQLTGPLA---VLKPDGNRFYLPKEHMTFSLITDAW 507 +G + + N +K W + + D + K L+ + Sbjct: 808 SGALNRLKLEELSGKNHNLIKSPWNIEEDRIVTSTIFMTDPPKRKEMKNKDEDKLLRGSP 867 Query: 508 ICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEG 567 + KI D F G + E + + V Sbjct: 868 TSTIGRKIRDMTFAGR--RIELKEVPEVMEGLLKASENYGSVVKEAGPFGGMGWRLAGST 925 Query: 568 LAKARDWVSHDPLIAQLRSENVWTDINDRVVEGG---FYYRTAEHSAQQSSERLQSYEKM 624 + A D + + V+ I + + GG F + EH+AQ + + E Sbjct: 926 VQFALDEAHENAELQNEYFVGVYLKIAEMLEAGGETLFGFEGREHTAQVEGDLRELREMR 985 Query: 625 FKNGQ----------------------LNVLNCSTTMEMGVDTDRVMTLASRSQQAT--- 659 F+ G L L CS TME+GVD + + R+ T Sbjct: 986 FRYGSDDRKSLIEAEEKLKNFKEDSRFLPTLFCSPTMELGVDISAMNVVYLRNAPPTAAN 1045 Query: 660 -----IPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQ 714 ++ + F + V I + + + S Sbjct: 1046 YAQRSGRAGRSGQAALILTYCAAQSPHDQYFFERKTDLVDGVVVPPSIDLKNR-DLVESH 1104 Query: 715 FGQRFWDVLFNDHEEAQSLMNNTRITG-VHYTDRYLQNPVALALLGSI--LRPLKTKLTD 771 W + S+ + I + TD A ALL I + K Sbjct: 1105 L-NAEWLASLGMELKTDSIELDKNIKSNLDLTD------PAKALLPEIRDVASAKRTAER 1157 Query: 772 GAEVTLDTLFKDKDRPGNRPFHDW--MSIADFQDF---ADQWFAAALGRPVEL 819 + + +D + K ++ + W Q+ A F R +L Sbjct: 1158 ASPL-IDGVLKALEKDYAGDYPRWFKTRQQVTQNIVAQAPARFNETFNRWRDL 1209 >UniRef50_UPI0001C16AE3 DEAD/DEAH box helicase domain protein n=2 Tax=Nostocaceae RepID=UPI0001C16AE3 Length = 1786 Score = 211 bits (536), Expect = 9e-53, Method: Composition-based stats. Identities = 95/786 (12%), Positives = 211/786 (26%), Gaps = 144/786 (18%) Query: 15 VYEVAFCNDCNEPHLLARDKKGK--LVQWENKGGDE-----------FSLQDEVPVEHDA 61 +Y + FC +C + + + K ++ D +L + + Sbjct: 544 LYPLVFCRECGHDYYVIHYNEDKQVVLPQLPTSLDMNPEYADTKTGYLTLDEPGLWDPYK 603 Query: 62 TEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCSA 121 EE++ + A + Q+L + Sbjct: 604 DEERLPDSWFTETKKNGRVPRKDYAKFIPQKLQILPNGKVTTSLLQGTTCWFVPRPFRVC 663 Query: 122 SGCGY-RGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRR 180 CG + + + + L + T+L + G + + Sbjct: 664 LNCGVVHDGNKNEFTKLSRLSSE--GRSTATTLLCLSTVSRLKQVFTGEK-----AQAAK 716 Query: 181 LITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARA 240 +++FTD+RQ + A ++ S + A L L ++ Sbjct: 717 ILSFTDNRQDASLQAG-----HFNDFVQTSFLRA----------------ALLGALQSKG 755 Query: 241 KQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKER 300 K + M K + + + + + +++ Sbjct: 756 KLTHSELVGEVIKQMGISQKDYAKEKAEFGK----------GKTRNEKAFQDLIEYR--- 802 Query: 301 ADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGL 360 + + + ++P +LE GL+ + Y GL Sbjct: 803 --LYEDLRRGWRIVQP-----------------------------NLEQCGLLVIEYDGL 831 Query: 361 EKIHKSPLHWQEKGLTL-----DDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSK 415 E+I + W + + R + L +++R + S Sbjct: 832 EEICTNKDIWNKHRHPVLLQATPQERLTAALALLNHLRRELAID-----ARLLQSDNKDS 886 Query: 416 FVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWA 475 +R+ E P + + N AK + +K + + T Sbjct: 887 LLRDVFQTIKE-------PWVFDENEKWHFAKFATIDGNYKAKSQHKAPVKLT------- 932 Query: 476 QLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEH 535 + + L E +T + + T I+ Sbjct: 933 -TQSKIGRFLRSPKAWSLRSELLTETEYNTL--------------------ISTFITALA 971 Query: 536 LTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDIND 595 Q +WK E + L+ R D I R + + Sbjct: 972 DAGFLITKNGIQLQISSLVWKFSILTEIPPDPLSSKRLQGQEDVKIPVNR---FFQEFYQ 1028 Query: 596 RVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRS 655 + EH+ Q ++ Q E+ F+ G+L L CS TME+G+D + + R+ Sbjct: 1029 TNAQKIQAMEGREHTGQVKAQARQEREERFRKGELASLFCSPTMELGIDISDLSVVHLRN 1088 Query: 656 QQATIP--------GPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQ 707 + ++ + + F + +++ Q Sbjct: 1089 VPPSPANYAQRSGRAGRSGQEALVITYAAIGSGHDQYFFQRQQQMVAGAVAPPKLELANQ 1148 Query: 708 LNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRY-LQNPVALALLGSILRPLK 766 + S + +++ + + + + D Q ++ A L L+ + Sbjct: 1149 -DLVESHVYSIWLAHTGVYLDDSMNKILDLDVADYPLKDSVREQLTLSPAKLAECLKATQ 1207 Query: 767 TKLTDG 772 + L D Sbjct: 1208 SILADP 1213 >UniRef50_Q92JT3 Putative uncharacterized protein n=1 Tax=Sinorhizobium meliloti RepID=Q92JT3_RHIME Length = 1832 Score = 210 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 95/755 (12%), Positives = 204/755 (27%), Gaps = 123/755 (16%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHD 60 ++ + C CG V E+ +C DC E L G +V + F+ + Sbjct: 566 LFKSPAMKCGCGGQVLELLYCYDCGEAFL-----GGYIVPTTDPLLAGFTFVEATRAGEG 620 Query: 61 ATEEKVEKENSFQPPLIIAAGETSEAGYTLQR----------------LDRQTRRIGVIN 104 + E + G + + L+ + +G Sbjct: 621 NDKASQVNERTIDEYRWYWPGGELPPRSSWEHQSPSGKAVRMQFQRGTLNHFSGELGNDT 680 Query: 105 NDSIPLII-------------NDIEQVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVP 151 N LI + +VC ++G++ RRA G V + + Sbjct: 681 NPGSGLIFCRPATGLEASETIAALPEVCPCCLSSKISINGQEENRRAFFSG--MVKSPIR 738 Query: 152 TVLEYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSV 211 + T + + ++I FTDSR A +A ++ R +R V Sbjct: 739 GLRTGLNVTTQLVADRAMFATGDGDQSEKMIAFTDSRDDAADLAAGIELNHYRDLIRQLV 798 Query: 212 VEILSWHQRTQTSTAPNANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQ 271 L+ + ++ ++ + AE A++ ++ Sbjct: 799 HSSLAPRKIPASTELLAYVGSDPSDDPILRELVDAAERQTPGIFTAVKLDKFGVADKAQK 858 Query: 272 AYQAATGGKAATILVSRTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEM 331 A A ++ W ++ + R + Q + +NG Sbjct: 859 ALIARHDAGVSSP--RVGWPSLLEMMSTRL---VTLGQNPAGPRASRATDNGEEDGTPWW 913 Query: 332 LLFREFMRRPKRTNSLETQGLVQVGYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHY 391 F T + + + Y L + + G D +++ Sbjct: 914 RFFDPPTPGDWATVAPDVARARRRDYMELFATEVAVSLFDRAGR---DMESMAVASIEVD 970 Query: 392 VRESNFTQLDDELKNWIGSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLML 451 + N +DDE+ N + + + + + E ++ + ++A+ L L Sbjct: 971 GKHGNRLFMDDEVANGVLANI-VRILGHARYMAGEKSRGSTSIPRTAKSYIEKVARHLNL 1029 Query: 452 GAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPV 511 A + + W + L + C Sbjct: 1030 DALALGSTISEYLQERGVINANWLLQITNHSTLPLA----------IVPRGERKLHRCEK 1079 Query: 512 TNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKA 571 ++ + L + + + Q+ Y+ Sbjct: 1080 CSR-------------------RTMLLPVKACTTPHCNSSSFLVVENPGQDYYS------ 1114 Query: 572 RDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQ-SSERLQSYEKMFK---- 626 WVS E AE + Q + ++ +++FK Sbjct: 1115 --WVS---------------------REPVHRLAAAELTGQTKPMSKQRNRQRLFKGTAY 1151 Query: 627 -NGQ------LNVLNCSTTMEMGVDTDRVMTLASRSQQAT--------IPGPEWHLNDEL 671 +G+ ++ L+ +TTME+GVD + + + Sbjct: 1152 LDGESPLVQGIDALSVTTTMEVGVDIGSLKLVMMANMPPQRFNYQQRVGRAGRAGQAFSY 1211 Query: 672 VVRSLGYKTVELNEFILPAKATNAVERVKDIQIHK 706 V + F P + T + + + + Sbjct: 1212 AVTISRGAAHDDYYFNNPERMTGDLPPQPKLDLSR 1246 >UniRef50_B1I5A5 DEAD/DEAH box helicase domain protein n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I5A5_DESAP Length = 1589 Score = 209 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 115/714 (16%), Positives = 200/714 (28%), Gaps = 155/714 (21%) Query: 15 VYEVAFCNDCNEPHLLAR-DKKGKLVQWENKGGDE----------FSLQDEVPVEHDATE 63 V+EVA C +C + +L+ R G+ + D L+ VE DA + Sbjct: 508 VFEVALCRECGQHYLVGRIQGDGRRGRLVEAVRDPSHPEYGAVFFRPLETPQSVESDAED 567 Query: 64 EKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCSASG 123 ++ Q + D + V ++ +Q+ S Sbjct: 568 DESAAPQDRQRYALCVQCRAIWLEGLAPLCDH-AEILAVEREEAARE---GDDQIPRCSA 623 Query: 124 CGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLIT 183 CGY P R + G T I T+ + LP ++++ Sbjct: 624 CGY---QAPDPVREVVHGTDGPHTVIATTLYQ-----------------ELPSDRKKILA 663 Query: 184 FTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARAKQA 243 F DSRQ A + + + R + L W + L LA Sbjct: 664 FADSRQEAAFFSWYLDR-----TYRDLLTRNLVWQAGSALGWRTREGLSLADLA------ 712 Query: 244 REQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERADI 303 E YR A ++ E +A A E + E ++R + Sbjct: 713 ---DEYYRLLRSRHLAAPYASETELRREAGIA-------------VCREFLTE-EKRISL 755 Query: 304 RGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRR-PKRTNSLETQGLVQVGYQGLEK 362 G L Y P+ + EF+R P + E L+QV + L Sbjct: 756 EGVGLGYWSLRWPDWYGP-------------MEFLRAGPWTLGAEEALELLQVLFNLLRD 802 Query: 363 IHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVRNPES 422 L L W D R + P Sbjct: 803 QGAVELPLDGPA-GLVTWDDL------------------------HLKRPQKRVRLGPPR 837 Query: 423 KDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLA 482 + W R+G V RL K +++ G A + L+ W + Sbjct: 838 GEKG---VCSWEGARSGRV--RLLKKILMARGLDNGEAVREAGL--CLQRIWEAVLEYER 890 Query: 483 VLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYD 542 R LP + + L + W + Sbjct: 891 KAPETAYRLLLPAANNAWRLNSAWWR----------------------FHVFRPEATLWR 928 Query: 543 TFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGF 602 + +V + L + A ++ + Sbjct: 929 CDMCGRVGRWSVAGLCSRPACPGRMVRAAAGELTDNHY------------RYLYQSAFPG 976 Query: 603 YYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPG 662 R EH+AQ ++ + Y++ FK G++++L+CSTT E+GVD + T+ R+ Sbjct: 977 RLRVEEHTAQLGRKKAREYQEAFKKGRIHLLSCSTTFELGVDLGDLDTVFLRNTPPE--A 1034 Query: 663 PEWHLNDELVVRS----------LGYKTVELNEFILPAKATNAVERVKDIQIHK 706 + R +L F P + + + +++ Sbjct: 1035 FNYAQRVGRAGRRPGRPGIALTYCRRAPHDLYHFAHPEQILHGSTKPPVLRLTN 1088 >UniRef50_B5PIM9 Helicase n=2 Tax=Salmonella enterica subsp. enterica RepID=B5PIM9_SALET Length = 1982 Score = 208 bits (529), Expect = 6e-52, Method: Composition-based stats. Identities = 98/787 (12%), Positives = 216/787 (27%), Gaps = 151/787 (19%) Query: 13 SPVYEVAFCNDCNEPHLLARD-----------------------KKGKLVQWENKGGDEF 49 S E+ +C C L + + K V E + +E+ Sbjct: 627 SRRVELLYCECCGNLFLGGKPSVFSGSESRIELLPNDPDTEQLPEHAKSVMVERRSAEEY 686 Query: 50 SLQD---EVPVEHDATEEKVEKENSFQPPLIIAAGETSEAGYTLQRL------------- 93 +L E E + +N+F + + + L Sbjct: 687 ALFMPVVERFWPKGDEELNSDNDNTFGTWVKASYDPFTATIQHPVSLLKPLPENHIAGWF 746 Query: 94 -DRQTRRIGVINNDSIPLIINDIEQVCSASGCGYR---GMSGKQPFRRALLGGPFYVTNI 149 + CG G P R +G + Sbjct: 747 YYVKPGEFASSERGQSSSQSPGTALPFQCPACGTSYKYGKGKLSPIRSFRVGFSKTTQLL 806 Query: 150 VPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRG 209 +++ Q + E +L+TF+DSRQ AR A+ ++ R Sbjct: 807 ASSLMAELQRSGNRE---------------QLVTFSDSRQDAARAALDLESGHHDDVRRE 851 Query: 210 SVVEILSWHQRTQTSTAPNANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQL 269 VV L + S + +QA + + ++ + + ++L Sbjct: 852 IVVHSLQSIAADKPSHN----------QLKIRQAEIEERNKTLINLNVRSDEEEDEMDRL 901 Query: 270 EQAYQAATGGKAATILVSRTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENG--GPLK 327 + G + S ++ E D P+ + + G Sbjct: 902 ADERKKIRGLLSKPETDSIPLRGILE--PESPDAGQPLGLLLRAQVDAGIHPSDRTGIAP 959 Query: 328 LSEMLLFREFMRRPKRTNSLETQGLVQVGYQGL----EKIHKSPLHWQEKGLTLDDWRDF 383 + + + E E + ++ L + + + L F Sbjct: 960 VPDPEKYGEGTLTFAWQQLFEKNAQGEWCWKALPSYEDNLLVARQEISRDLKRLVGESVF 1019 Query: 384 LKVTLDHYVRESN---------------FTQLDDELKNWIGSRFSSKFVRNPESKDPEDN 428 K + ES + D + + + + + + P + Sbjct: 1020 SKTY--FALEESGWGYPCLPITGNDSREHLAIYDAMFRVLADAYRVTPSQYTKPETPWSS 1077 Query: 429 QNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDG 488 + N +R + + +G + + +I+++L+ + Sbjct: 1078 A----HDVNRRNRLYRFTQAICQRSGGEP-----LSLIDSFLR----------RLELAGH 1118 Query: 489 NRFYLPKEHMTFS---LITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLA---QYD 542 + M F W C +I G+ + + + A Q Sbjct: 1119 QGGIIDIGKMHFRLAEPTDRVWRCSRCGRIHMHIGAGICTRCYSPLPETPGSEAKTLQMQ 1178 Query: 543 TFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSEN-VWTDINDRVVEGG 601 ++ ++++ RS+E ++ +P R + + D +D + EG Sbjct: 1179 HYLGKRLSHSSGIHRMRSEELTG---------MTENPAARLRRFKGILIADDDDILPEGM 1229 Query: 602 FYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQAT-- 659 + + + +R ++VL+ +TTME+GVD + + + Sbjct: 1230 KDF-----APDRDLDRAARV--------VDVLSVTTTMEVGVDIGDLRAVFQANMPPQRF 1276 Query: 660 ------IPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLS 713 V+ + K+ +L F P K T + + +L Sbjct: 1277 NYQQRVGRAGRRGQAFSFVLTACRSKSHDLFYFRHPEKITGDLPPPPF--LTTKLEMICQ 1334 Query: 714 QFGQRFW 720 + ++ W Sbjct: 1335 RLVRKIW 1341 >UniRef50_D0XMD3 DEAD/DEAH box helicase domain protein n=1 Tax=Brevundimonas subvibrioides ATCC 15264 RepID=D0XMD3_9CAUL Length = 1954 Score = 208 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 96/752 (12%), Positives = 192/752 (25%), Gaps = 134/752 (17%) Query: 13 SPVYEVAFCNDCNEPHLLA---RDKKGKLVQWENKGGDEFSLQDEVPVEHDATEEKVE-- 67 + E +C C E + + G + + +L E Sbjct: 639 RRLIETLYCEACGELFVGGMRSANGAGGAIDLLPSSANLEALPFGASGTEFEDLSHQEYA 698 Query: 68 -----KENSFQPPLIIAAGETSEAGYTLQRLDRQTRRI---------------------G 101 + P ++ + S + LD RI Sbjct: 699 IFWPTSRAGAETPETMSGRDASRPRWDEAYLDPFGARIWRDRLNEDVVRGLVFNRSTQAS 758 Query: 102 VINNDSIPLIINDIEQVCSASGCGY----RGMSGKQPFRRALLGGPFYVTNIVPTVLEYC 157 + + CG R P R G + + E Sbjct: 759 HKDARDRAFGDRGSATPAACPACGTSYVLRSQGRSSPLRNFRTGFAKTSQLLATELFEVL 818 Query: 158 QDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSW 217 P + I F+DSRQ AR AV ++ + R+ +R +V + Sbjct: 819 HAP-------------RPAVSPKAIVFSDSRQDAARAAVELEADHFRALIRDVIVRLTRE 865 Query: 218 HQRTQTSTAPNANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAAT 277 A + AA A+ +A ++ ++ + + T Sbjct: 866 RIDADYRAEDRATVEEAMRAAAAEMDYTEAARLKAILTQKESLAIETEPLTALAQDPDDT 925 Query: 278 GGKAATILVSRTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLF--- 334 A T ++++ L + +F +G LK + Sbjct: 926 AYLATTPAADPPMAQLISRLVRLGIHPSDSSVASDDEWWRLFTMDGENLKWARPSGALDA 985 Query: 335 -------REFMRRPKRTNSLETQGLVQVGYQGLEKIHKSPLHWQEKGLTLD--DWRDFLK 385 RE + +L + + E P + + + + L+ Sbjct: 986 NAIQGKRREIAEEQRE--ALHDTLFNKTYFSFEEAGLGYPTFFTRGEYSAERDELDALLR 1043 Query: 386 VTLD-HYVRESNFTQLDDELKNWIGSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHR 444 V D + V S F + +K W + + P N+ RR+ + + + Sbjct: 1044 VLADTYRVDGSRFVDVSQ-IKQWSSA-----------ADVPVGNRVRRFCEAASPGNGDQ 1091 Query: 445 LAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLIT 504 L + A + ++ L L F+ L Sbjct: 1092 Y-----LNTALDRLRQADLGHNGGVVR-----LFSLGVRLARADTPFWRCTRCDRAHLHR 1141 Query: 505 DAWICPVTNKILDTAFKGLTPYLPTH-ISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQED 563 A +C L G+ L H + A ++ E+ + Sbjct: 1142 GAQVCTRCGDPLPATAAGVAKDLWRHNFLAHRVDRAGTGAEEPFRLRSEELT---GQTRN 1198 Query: 564 YAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEK 623 AE L + R + + R + Sbjct: 1199 GAERLRRFRGILVEEGAGQAARLPKL---------------------------------- 1224 Query: 624 MFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQAT--------IPGPEWHLNDELVVRS 675 ++++L+ +TTME+G+D + + + +VV Sbjct: 1225 ---GKEIDLLSVTTTMEVGIDIGPLQAVYQANMPPQRFNYQQRVGRAGRRGQAFSIVVTV 1281 Query: 676 LGYKTVELNEFILPAKATNAVERVKDIQIHKQ 707 ++ +L+ F P + T + + Sbjct: 1282 CRSRSHDLHYFRHPERITGDAPPPPFLAAGYE 1313 >UniRef50_Q07PM3 DEAD/DEAH box helicase domain protein n=1 Tax=Rhodopseudomonas palustris BisA53 RepID=Q07PM3_RHOP5 Length = 2056 Score = 205 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 130/752 (17%), Positives = 222/752 (29%), Gaps = 163/752 (21%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHD 60 +Y RQNC CGS VYE+ C C + A V E QD Sbjct: 657 LYAEPRQNCPCGSQVYELHSCRSCGLSVVRASVGAPAGV--------EHLWQDNGRAYGG 708 Query: 61 ATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRI---GVINNDSIPLIINDIEQ 117 T F+ P+ AG LD T RI G + + Sbjct: 709 DTGLIEPIHICFEDPMPQTAGTVR-----AAYLDLATGRIDGAGSFTREVWLPPQLGSKL 763 Query: 118 VCSASGCGY----RGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDS 173 + CG +G + PF + VLE Sbjct: 764 FDACPRCGAASGPTSSNGISDLQT-KGDQPFQELISI-QVLEQAPRPQIK---------- 811 Query: 174 LPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADL 233 P +GR+ + F+D RQ +R+A ++ + R LR ++ + Q P+ + Sbjct: 812 TPLQGRKALVFSDGRQTASRLAGTLKTFSFRDSLRPLLLSGIK--ALRQPVFKPSLDDAP 869 Query: 234 EKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEM 293 +A A + + + ++ Q A G + Sbjct: 870 LAIALGAARHQVRLRPAGDD---------DGHMDRAGQHVLALVGNPDVE-------NDD 913 Query: 294 VNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLV 353 L R R PV + + +++ G L+ +L RPK L Sbjct: 914 YRTLSNRTSERTPVSVFKSI-YAVLQDDHTGLFPLALAML------RPK---------LT 957 Query: 354 QVGYQGLEKIHKSPLHWQEKGLTLDDWR-DFLKVTLDHYVRESNFTQLDDELKNWIGSRF 412 + L +I K P GL+ D R F+ + L +R+ +L +N +G+ Sbjct: 958 KTEANKLAEILKLPPI---DGLSQDQVRSAFIDLWLWQAMRKH-AIKLQHTPENVVGA-- 1011 Query: 413 SSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKE 472 + R W NG S +A +L + N ++K Sbjct: 1012 ------------GGSSGIREW----NGRFSKNVAAILE-------ARGLKQWLKNDFVKV 1048 Query: 473 AWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAW--ICPVTNKILDTAFKGLTPYLPTH 530 + G A +YL ++ + A C T Sbjct: 1049 CEPAMRGVFA--PGATGTYYLQAAKLSLDVDEKAEWIRCERC----------------TS 1090 Query: 531 ISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVW 590 +S + L + K ++D S + + Sbjct: 1091 VSPRNPLLGDSCGYCTGKAK-----QIDPSNDAVFRSRKAFYRRLWER-----------L 1134 Query: 591 TDINDRVVEGGFYYRTAEHSAQQSSE-------RLQSYEKMFKN----------GQLNVL 633 +D +D EHSA + R ++YE F++ +++L Sbjct: 1135 SDKDD--AYAPHQLIAEEHSAALNDSGLANAMSRNEAYELRFQDIPIDQDGQPGSPIDIL 1192 Query: 634 NCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLND----------ELVVRSLGYKTVEL 683 +C+TTME+G+D + +A R+ + VV G + + Sbjct: 1193 SCTTTMEVGIDIGGLTAVALRNVPPGRAS--YQQRAGRAGRRGAGLSTVVMFCGADSHDQ 1250 Query: 684 NEFILPAKATNAVERVKDIQIHKQLNGPLSQF 715 + F PA + + + F Sbjct: 1251 SFFRDPAPIVAGPAPDPILNLDNPVIARRQAF 1282 >UniRef50_A4VQ18 Putative helicase n=1 Tax=Pseudomonas stutzeri A1501 RepID=A4VQ18_PSEU5 Length = 2110 Score = 201 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 112/861 (13%), Positives = 224/861 (26%), Gaps = 130/861 (15%) Query: 16 YEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHDATEEKVEKENSFQPP 75 V C +C H + + D E Sbjct: 480 LPVIHCREC---HATGWGSTQQKISPNQLTHDLQGFYSAFFAED-----------VSTRF 525 Query: 76 LIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCSASGCGYRGMSGKQPF 135 + A+ + A + +++ + + + G + Sbjct: 526 IFPASAGANPAVFERKQVCPACGTLHQASQTECAHCEGQPLLAVDIASNLREGTRNGAKY 585 Query: 136 RRALLGGPFYVTNIVPTVL-EYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQGTARM 194 ++ P+ T++ + + P ++LI F+DS Q A Sbjct: 586 TKSHHDCPYCAGYKTLTIVGSQAASLAAVMVGQLFATRFNPD--KKLIAFSDSVQDAAHR 643 Query: 195 AVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARAKQAREQAEEYRSWG 254 A + R LR ++ +++ + P A+L A+ + Y + Sbjct: 644 AGFLAARTWRMNLRPALTQVI---AAADATGQPLTLANLPAAFAQRWRTALGDGHYIANF 700 Query: 255 MPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERADIRGPVLQYNHYL 314 +P Q + + +E+ + + + W + E + A I ++ Sbjct: 701 LPPQMQWLRDYETLMEEGVLPESSKLPSELARLLPW-VLNAEFGQDAHIGRTLVATGTAC 759 Query: 315 KPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGLEKIHKSPLHWQEKG 374 + + P+ ++LE L ++ E Sbjct: 760 VVPLAGRLDEAAQWL----------LPRVRDTLEPLAAA-----QLAEVVVLLRGLLENM 804 Query: 375 LTLDDWRDFLKVTLDHYVRESNF---TQLDDELKNWIGSRFSSKFVRNPESKDPEDNQNR 431 + WRD L Y R + + + + S +F+ PE Sbjct: 805 QRIGAWRD---PELGFYARMGSSPWVYKKNPSQFKLLTSPRPPRFLTLPEFGRC------ 855 Query: 432 RWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRF 491 + RL + + + + A L R Sbjct: 856 ----VSITKSHARL------FSDWAFKALPALHDVALGTDALIAAL-----------YRL 894 Query: 492 YLPK-EHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVT 550 L E + DA P D GL P L + Sbjct: 895 ALEALESAGLAGFEDATEKP------DIRVWGLEP----SAFHVVLGGKTWRCDRC---- 940 Query: 551 MPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYR--TAE 608 L ++D+ E + + D + D ++ R E Sbjct: 941 --HGTTLSGPEDDFTEQVCRRVDCRGELQALEVP------GDFYRKLYLNADIQRVVAHE 992 Query: 609 HSAQQSSERLQSYEKMFKN-----GQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGP 663 H+ E ++ E+ FK+ G +NVL+ + T+EMG+D + ++ S Sbjct: 993 HTGLLPRETREAVERNFKSNSDRPGGINVLSATPTLEMGIDIGDLSSVLQCSVPPQQ--A 1050 Query: 664 EWHLNDELVVRS---------LGYKTVELNEFILPAKATNAVERVKDIQIHKQ--LNGPL 712 + RS K +L + P + + ++ L L Sbjct: 1051 NYIQRAGRAGRSTGNALLMSMATSKPHDLYFWDDPKTMIAGSVQAPGVFLNASAVLERQL 1110 Query: 713 SQFGQRFW-------DVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPL 765 + F W + + + +NN + Y +LL LR Sbjct: 1111 TAFTLDCWVHENGRAAQIPPEIRGVFTAINNQTSSKFPYPWLSFVEQHQASLLERFLRLF 1170 Query: 766 KTKLTDGAEVTLDTLFKD-------KDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVE 818 D P + + + + A + ++ Sbjct: 1171 NQGKLRPLSEGTRQWLADFIQGSNGDSSPLAYKIVNRLQGIASDVESIKRKREAAVKEID 1230 Query: 819 ----LTVFDSPRDIPHHRKLT 835 LTV +D+ R L Sbjct: 1231 KLQALTVRGEDQDLELARLLQ 1251 >UniRef50_B4S9Y6 DEAD/DEAH box helicase domain protein n=3 Tax=Bacteria RepID=B4S9Y6_PELPB Length = 1723 Score = 201 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 105/947 (11%), Positives = 251/947 (26%), Gaps = 194/947 (20%) Query: 14 PVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFS------LQDEVPVEHDATEEKVE 67 P++ F P + +L E + E L + + + ++ Sbjct: 449 PIFPNVFSRGSGHPFICVSLAGNRLEPREFRDMTEDEESNDGYLIIGEEIWNLDEDIEML 508 Query: 68 KENSFQPPLIIAAGETSEAGYTLQRL--DRQTRRIGVINNDSIPLIINDIEQVCSASGCG 125 E+ F+ ++ + GY +L D + + G Sbjct: 509 PESWFRRTKSGVTLDSKKRGYFPVKLWFDEFGNCSDKEEKKWWGWFMKAPLLFDP-TSGG 567 Query: 126 YRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLITFT 185 + + + LG T+ T + ++L++FT Sbjct: 568 FFDTRTNEGTKLTKLGSEGRSTSTTITAFSILNRLSDAGYAIKE---------QKLLSFT 618 Query: 186 DSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARAKQARE 245 D+RQ A A + RLR + + L + A A + L Sbjct: 619 DNRQDAALQAGHFNDFVQVIRLRAGIHKALQQAPVGMLTFATLGEAVFKAL--------- 669 Query: 246 QAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERADIRG 305 G+P ++++ L + +L Sbjct: 670 --------GLPFLEYANRSEESMLAPIRRKYEQALQDFLLYRSM---------------A 706 Query: 306 PVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGLEKIHK 365 + + + P +LE L+ + Y+ L++I Sbjct: 707 DLRRSWRVVLP-----------------------------NLEQCALLTIEYEDLDEIIA 737 Query: 366 SPLHWQEK----GLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVRNPE 421 + W L D ++ + LD + R F ++ Sbjct: 738 TDAFWAVSPLFGSLNHTDRKELVTTILDFF-RLEYAIH---------SENFLTQSRIQES 787 Query: 422 SKDPEDNQNRRWPQIRNGNVSHRL---AKLLMLGAGFKTVNAATIDIINTWLKEAWAQLT 478 + ++ + W RN + + L A T + + ++++ Sbjct: 788 ERQFRESLKQPWTLDRNEKLQEPYYIRYQKLSKTAKLYTKSMGPASSLGKFIRD------ 841 Query: 479 GPLAVLKPDGNRFYLPKEHMTFSLITDAW--ICPVTNKILDTAFKGLTPYLPTHISFEHL 536 Y+ ++++ L + + + T ++L+ A ++ Sbjct: 842 -------------YVKRQNLGIDLKKEGYKNLIMQTMEMLEQA---------DYLKSFPA 879 Query: 537 TLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDR 596 Q + + ++ + ++ + K R + P + + R Sbjct: 880 RSEQNEEVLIYRLRLEKVIWKAGEGLTVKADIIKRRTYKKQRPEPNLF-----FKTLYCR 934 Query: 597 VVEGGFYYRTAEHSAQQSSERLQSYEKMFKNG------------------QLNVLNCSTT 638 R+ +H+ Q S+E E+ F+ ++VL CS T Sbjct: 935 DFSTMKRLRSEDHTGQLSNEARLDREERFRADWYTDEGKRVADQQKIRAESISVLFCSPT 994 Query: 639 MEMGVDTDRVMTLASRSQQATI--------PGPEWHLNDELVVRSLGYKTVELNEFILPA 690 ME+GVD + + R+ + Y + + F Sbjct: 995 MELGVDIGSLNVVHMRNAPPNPSNYAQRSGRAGRSGQGALIFTYCSSYAPHDRHYFNNQR 1054 Query: 691 KATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQ 750 + + ++ + ++ ++ N + +L Sbjct: 1055 ELVAGTVMAPRLDLNNE-----ELLRAHLHALVASEVGIPGLDEGNGSRPSI----MHLV 1105 Query: 751 NPVALAL-LGSILRP-------LKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMS----- 797 + L +R ++ + + + W+ Sbjct: 1106 TDDNNKMPLAESVRAGLQLSPVQFDRIKANFRRVIRDFEPELEAKAAWYSDQWIEQNLSK 1165 Query: 798 -IADFQDFADQWFAAALGRPVELTVFDSPRDIPHHRKLTVTFEDGQVLKIRFDQGMGYWR 856 I + D+W + R + + + I L++ E+ + K DQ Sbjct: 1166 IIETLDEALDRW--RLIYRSARAILTRATQKIESG-TLSLGSEEYRKYKRHQDQA----- 1217 Query: 857 INFSSQWHYFDFRDDVSFQLVKMAQACKEGNVANSEESWATDVLVEV 903 R+ +S + ++++ +A+ + Sbjct: 1218 -----TRQLDLLRNHLSGKASELSEFYPWRYLASE-GFLPGYNFTRL 1258 >UniRef50_D2QY08 DEAD/DEAH box helicase domain protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QY08_9PLAN Length = 1845 Score = 200 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 121/912 (13%), Positives = 221/912 (24%), Gaps = 195/912 (21%) Query: 15 VYEVAFCNDCNEPHLLARDKKG---KLVQWENKGGDEFSLQDEVPVEHDATEEKVEKENS 71 + +AFC +C + V + + ++ ++D E EK Sbjct: 460 LLPLAFCRECGAEYYSVWKSNDVGTGRVHFRPRDLND-RVEDPAEGEAGFLYRDPEKPWL 518 Query: 72 FQPPLIIAAGETSEAGYTLQR------LDRQTRRIGVINNDSIPLIIN-----DIEQVCS 120 P I+ R L + VI D Sbjct: 519 DDPDEIVQQLPDDWLEEHRGRQRVRSNLRDDVPQPIVIGPDGTVDAQGLIYSYTSTPFRF 578 Query: 121 ASGCGYRGMSGKQPFRRALLGGPFYV-TNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGR 179 CG L + T+L +L R Sbjct: 579 CQNCGVSYRVRTGASDYGQLATLASGGRSTATTILSLSSVRLLRNEP------TLQNFAR 632 Query: 180 RLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAAR 239 +L++FTD+RQ + A + S++ +A + +AA Sbjct: 633 KLLSFTDNRQDASLQAG-----HFNDFVEVSLLR----------------SALYKAVAAA 671 Query: 240 AKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKE 299 + E + KA + E + + Sbjct: 672 GEAGISHDELTQRVY-------------------------KALNLPFELFAREPGVQFAQ 706 Query: 300 RADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQG 359 RAD Y R N LE GL+++ Y Sbjct: 707 RADTERAFRNVLGYRLYRDQKR----------------GWRVTSPN-LEQCGLLRIEYPS 749 Query: 360 LEKIHKSPLHWQEKGLTL----DDWRDFLKVTLDHYVRESNFTQLDDELKNWIG--SRFS 413 L ++ ++ W+ L R+ + L Y+R +D + + S Sbjct: 750 LMELCRAGEFWRGTHAALTTATPQTRERIAKALLDYLRRELAIDVDYLTTEFFERLQQQS 809 Query: 414 SKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLL----MLGAGFKTVNAATIDIINTW 469 S+ +R P + D ++ G H G G +T+ + Sbjct: 810 SQRLREPWAIDEQERPEVAAAVFPRGRRPHDRQFYTYVSGRSGFGIFLGRPSTLPEFD-- 867 Query: 470 LKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPT 529 + G L + D + + L +I + D P Sbjct: 868 ------RSQGKLKLTDKDS-----IIQDLFRVLANAGYIVQIVEPTDDDL-----PGYQL 911 Query: 530 HISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENV 589 S + +A + +P + D Sbjct: 912 SASAMNWVVADGTVAFHDPIRVPNPPQDGGQTND-------------------------F 946 Query: 590 WTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVM 649 + + V EH+AQ E + E+ F + +L VL CS TME+GVD ++ Sbjct: 947 FVNFYKTVANDLRGLEAREHTAQVPYEERERREQDFGSAKLPVLYCSPTMELGVDIRQLN 1006 Query: 650 TLASRSQQATIP--------GPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKD 701 + R+ T ++ + + F P + Sbjct: 1007 VVNMRNVPPTPANYAQRSGRAGRSGQPAFVLTYCTSGSSHDQYFFRQPERMVAGAVSPPR 1066 Query: 702 IQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSI 761 + + + L H A L LG+ Sbjct: 1067 LDLANE--------------DLVRAHVHAIWLAETGEW------------------LGNS 1094 Query: 762 LRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVELTV 821 L L +T+ + LG T Sbjct: 1095 LTDLLDVEGANPSLTMLPSKVAGLSKKTAIESARAKAEAVLRTISE----ELGTSPWFTS 1150 Query: 822 FDSPRDIPHHRKLTVTFEDGQVLKIRFDQGMGYWRINFSSQWHYFDFRDDVSFQLVKMAQ 881 + + H F+ WR F + F+ ++ + + +Q Sbjct: 1151 EWLKQTLDHS-------------LHAFEDACQRWRSLFRAAKDQFERQNVIIGDVAMRSQ 1197 Query: 882 ACKEGNVANSEE 893 + + E Sbjct: 1198 WDEARRLRREAE 1209 >UniRef50_A7HNV8 DEAD/DEAH box helicase domain protein n=3 Tax=Thermotogaceae RepID=A7HNV8_FERNB Length = 923 Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 57/354 (16%), Positives = 113/354 (31%), Gaps = 17/354 (4%) Query: 513 NKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKAR 572 + TP +P + L ++ E+ +D +A R Sbjct: 547 RVNVHVLSMSATP-IPRTLHMALSELKEFSEIKTPPFGRKEVQVHIGPFDDRIVRIAILR 605 Query: 573 DWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNV 632 + +I N D+ +R+ E QQS L+ MF +G+ +V Sbjct: 606 EINRGGQVIYVHNRVNTIYDVYERLKELLPEVSIVIGHGQQSKSELKRAIDMFFHGKADV 665 Query: 633 LNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKA 692 L C+T +E GVD TL + L +R ++ +++ Sbjct: 666 LLCTTIVENGVDVPNANTLIVDDAH------RYGLAQLYQLRGRVGRSDKISFAYFFHPK 719 Query: 693 TNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNP 752 + ++ + K GP S D+ L + I + Sbjct: 720 HVNDKVLERLYAIKSYVGPGSGLKIAMRDMEIRGIGAVFGLEQHGYINDIGLN------- 772 Query: 753 VALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAA 812 L LL ++ K +L + L+ + P + + + ++ A Sbjct: 773 YYLELLDETIKESKGELISKVDTELEGIPGSIIIPEAYIYDPFERMRFYRRIASATSIDE 832 Query: 813 LGRPVELTVFDSPRDIPHHRKLTVTFEDGQVLKIRFDQGMGYWRINFSSQWHYF 866 L ++L + D IP+ + + + G + + + G+ I S+ F Sbjct: 833 L-MDIKLELEDRFGKIPNSVENLLKY--GMLRVLLWKMGVKKATIGDSTIVVEF 883 >UniRef50_A9VZE2 DEAD/DEAH box helicase domain protein n=2 Tax=Methylobacterium extorquens RepID=A9VZE2_METEP Length = 1754 Score = 195 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 122/864 (14%), Positives = 211/864 (24%), Gaps = 176/864 (20%) Query: 13 SPVYEVAFCNDCNEPH-----LLARDKKGKLVQWENKGGDEFSLQDEVPVEHDATEEKVE 67 + ++ FC DC + L D + + + E + Sbjct: 456 ALLFSTHFCRDCGHEYHPVMRLDDEDGDRFVARSIDDPISERETDSGTAGYLVPEPATIN 515 Query: 68 KE----NSFQPPLIIAAGETS---EAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCS 120 + P + ++ Q++ + + + Sbjct: 516 EFFQGALDEYPDEWVEHTPRGSRLKSTRRKQQVAAAVVLPNGRVDAAGRQAWFIPGRWRF 575 Query: 121 ASGCGYRGMSGKQPFRRALL----GGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPG 176 C G + + G T IV ++L + + + Sbjct: 576 CLNCKLEAQPGTREQNKLAGLTAEGRSSATTLIVSSLLRFMHRPEAK----------IAD 625 Query: 177 RGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKL 236 R+++ F+D+RQ A A + LR +V+ + + A A + L Sbjct: 626 DKRKVLGFSDNRQDAALQAGHFNDFIFTTLLRAAVLSAVQAAGPDGLAEAEYGMAVQKAL 685 Query: 237 AARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNE 296 + RS A +R T++ Sbjct: 686 GFEDNNDDRRRHWMRS--------------------------PDAVGPSRARAITDLTRV 719 Query: 297 LKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVG 356 L R + + Y +LE L++ Sbjct: 720 LSHR--VWSDQRRGWRYTNL-----------------------------NLENLQLIRAH 748 Query: 357 YQGLEKIHKSPLHWQEKGLT--LDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSS 414 Y GLE L L D R + L +R + D F Sbjct: 749 YPGLESCADESLFKDAPLLRSLKPDARRRVFHALFEVMRGELAVESD----------FLK 798 Query: 415 KFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAW 474 K + DN W VS+ ++ GAG K + + Sbjct: 799 KATTESLGRSSRDNLRTPWAISEQEAVSNAGLLIVPEGAGGK-AQPNGRGPDSRLITAGP 857 Query: 475 AQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFE 534 G L L + I V N + + + G+T Sbjct: 858 NSRVGKKLRHGHLWGGRRLTVHEYNELLESVVRIAKVQNWVREVSEYGIT---------- 907 Query: 535 HLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDIN 594 +P +L R + N+ T + Sbjct: 908 ------------GLRLLPSAIRLVADAPKADVNTYFTRLYRET---------ANILTSDD 946 Query: 595 DRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQ----------------------LNV 632 D ++ + + EH+AQ + E F+ G L V Sbjct: 947 DSLL----GFESREHTAQVDKDLRLWREARFRWGDAGKRNLDVLRADQTNSLEADTFLPV 1002 Query: 633 LNCSTTMEMGVDTDRVMTLASRSQQATIP--------GPEWHLNDELVVRSLGYKTVELN 684 L CS TME+GVD + + R+ T +V + Sbjct: 1003 LFCSPTMELGVDISVLNAVYLRNAPPTPANYAQRSGRAGRSGQAALIVTYCAAQSPHDQY 1062 Query: 685 EFILPAKATNAVERVKDIQIHKQ------LNG---PLSQFGQRFWDVLFNDHEEAQSLMN 735 F + R I + + LN + R L + + L Sbjct: 1063 YFARREQLVAGSVRPPGIDLANRDLIEAHLNAIWLAKAGIDGRLRQELPDAIPDILDLDT 1122 Query: 736 NTRITGVHYTDRYLQNPVALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDW 795 R TDR + + R L L+ D + + Sbjct: 1123 PKRTVRTEITDRLANPDRVVGVEDDFERILGNIRASIPPAVLN------DPGSDWLKNSK 1176 Query: 796 MSIADFQDFADQWFAAALGRPVEL 819 +AD A Q F A GR +L Sbjct: 1177 PFVADVAKTAAQRFNNAFGRWRDL 1200 >UniRef50_C8NS10 Helicase n=4 Tax=Corynebacterium RepID=C8NS10_COREF Length = 2100 Score = 195 bits (494), Expect = 8e-48, Method: Composition-based stats. Identities = 110/846 (13%), Positives = 206/846 (24%), Gaps = 129/846 (15%) Query: 16 YEVAFCNDCN-EPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHDATEEKVEKENSFQP 74 FC C + A + + + E S+++ ++ Sbjct: 521 LPACFCRACGRSGWMTALEPGTETPETEPSVIRRASIENRGRQRPLLDATAEQRAALSAG 580 Query: 75 PLIIAA-GETSEAGYTLQRLDRQTRRIGVINN------------DSIPLIINDIEQVCSA 121 + G +++ D + + L +D+ + Sbjct: 581 RPVAGPRGGDADSAVLWLHTDTRELSVREPTEAEAASGSSIPVLTHYGLDADDLADEQTC 640 Query: 122 SGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRL 181 CG Y+ + + T+L L ++ Sbjct: 641 PSCGTTDSIR-------------YIGSSIATLLSVSLSNLFGMSD-------LDTSEKKT 680 Query: 182 ITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARAK 241 + FTDS Q A A +Q + LR ++ L ++ R Sbjct: 681 LVFTDSVQDAAHRAGFVQSRSRAFALRTLTRRAVT-----------EDGMTLARVPDRLM 729 Query: 242 QAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERA 301 + R +P ++ +A + R ++ E +RA Sbjct: 730 ELAAGNARSRYELLPPDLTDYPQFRGYWDKDASDGERRQAGRHVRRRLGLDLALEFGQRA 789 Query: 302 DIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGLE 361 D+ + + + L V L+ Sbjct: 790 DLARSLSLTGSLTVEVEVGDELARSAADD--------------------ALGAVTAPSLD 829 Query: 362 KIHKSPL-HWQEKGLTLDDWRD--FLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVR 418 S W L + R + + + N L+ G Sbjct: 830 SGDASRRLAWVRGVLEMTRERGGIYHHWFEPYLKDDGNAYLLNRRQARAQGIPGFPPGGS 889 Query: 419 N--PESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQ 476 P N R G+ R A+ G T +AAT + +E + Sbjct: 890 PEFPRLGQALSNARRDSGVTPLGSPRGRFARWTARQLGLSTHDAATA--VAQLFRELAKR 947 Query: 477 LTGPLAVLKPDGNRFYLPKEHMTFSLITD--AWICPVTNKILDTAFKGLTPYLPTHISFE 534 G F L E + S D C V A Sbjct: 948 EVLMTVDTNSGGTIFALSPEQIRVSCEDDPALLECDVCRARTGVAA------------EV 995 Query: 535 HLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDIN 594 L+ F +D +N + + Sbjct: 996 RQVLSDSPCFTPSCAGTLRSEPID----------------------------DNYYRTLY 1027 Query: 595 DRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQ-----LNVLNCSTTMEMGVDTDRVM 649 E EH++ + E F++G NVL + T+EMG+D + Sbjct: 1028 S--SEQPRTVVAREHTSLLDTPTRVQRENAFRSGDESADSPNVLVATPTLEMGIDIGDLS 1085 Query: 650 TLASRSQQATIPG--PEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQ 707 T+ S ++ L SL V+ LP + Sbjct: 1086 TVMLASLPTSVASYVQRVGRAGRLTGNSLILALVKGRGATLPKLNKPLSVISGAVSPPVA 1145 Query: 708 LNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKT 767 + ++F L + + A + + + V + D P AL+ I R ++ Sbjct: 1146 FLAAVEILNRQFTAYLVDSIDLAMEIPDLSDAVSV-FND----VPGEPALVDVITRRVRA 1200 Query: 768 KLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAA-LGRPVELTVFDSPR 826 + D + TL W + + + + L R + Sbjct: 1201 GIDDLLTEFITTLTGQITEDSAAELRRWATTEEAGGLIARLAQSRNLWRSERAELTARRE 1260 Query: 827 DIPHHR 832 + R Sbjct: 1261 RLYDRR 1266 >UniRef50_B2JC69 Helicase superfamily 1 and 2 ATP-binding n=1 Tax=Burkholderia phymatum STM815 RepID=B2JC69_BURP8 Length = 2097 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 101/780 (12%), Positives = 207/780 (26%), Gaps = 164/780 (21%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHD 60 +Y + C C + V+EV C DC + A + D + E Sbjct: 656 LYPQSTRECGCRARVFEVHTCRDCGVAYFQAYALNP-------------AQPDFLWAEDV 702 Query: 61 ATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDS------IPLIIND 114 E V+ L+ G ++ T LD T R+G + + P + Sbjct: 703 GDLEDVDGVVRPVQILLEDPGFDADKYCTTAFLDPLTGRVGTQSTSARQIWLPRPTKNVE 762 Query: 115 IEQVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSL 174 C +G Q G + I +L+ Sbjct: 763 PGHFEKCPHC---EGNGSQVMNHQTKGDEPFQELISVQLLDQPARP----------EAVS 809 Query: 175 PGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLE 234 P +GR+ + F+D RQ +R++ +++ + + +R ++ L ++ A Sbjct: 810 PLKGRKSLIFSDGRQAASRLSGKLKDFSLQDSIRPLLLSGLKMLEQRFDEPIALGYAYPA 869 Query: 235 KLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMV 294 L A AK ++ +P A+ + + + G + E+ Sbjct: 870 ILYACAKFDV-------NFRLPGSEHEEFARDLRKVRNFVKDHGDLGE-------FRELA 915 Query: 295 NELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQ 354 L + V L + N + G L L+ Sbjct: 916 ATLNKTR-----VQSVRAPLTRVLSNRHTGLLPLALAAPQALLTE--------------- 955 Query: 355 VGYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSS 414 +++++ G + R L + + + + L+ WI SR Sbjct: 956 ---NQIKRLNTLDAPPAGGGTDEEKRRALLDLWIALSL-STGSVMLEGTPSEWIDSREGP 1011 Query: 415 KFVRNPESKD--PEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKE 472 + R+ + E RW + + + Sbjct: 1012 QIKRSSGRQTGLFEKLFGARWHRAQFSKNAKP--------------------------GA 1045 Query: 473 AWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITD--AWICPVTNKILDTAFKGLTPYLPTH 530 +W + F++ + + C T Sbjct: 1046 SWIDFLTDTFAQNENAEGFFVNAAKVRLRPEQEVRWRRCGHC----------------TL 1089 Query: 531 ISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVW 590 E+L + K T + D K + + Sbjct: 1090 AQPENLLMGGT-CIQCGKQTALLDPRKDTVFRTRKYLYRKLVERL--------------- 1133 Query: 591 TDINDRVVEGGFYYRTAEHSAQQSS-------ERLQSYEKMF-----------KNGQLNV 632 + + + + EH+AQ + R + YE F + G ++V Sbjct: 1134 -EAENDQGYVPYPFVAEEHTAQLNDAGQDQAFSRAEWYELRFQDLDVPGPRGERAGAVDV 1192 Query: 633 LNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLG----------YKTVE 682 L+C+TTME+G+D + +A R+ + R + + Sbjct: 1193 LSCTTTMEVGIDIGSLTAVALRNVPP--GRANYQQRAGRAGRRGSSLSTVVTFAGSDSHD 1250 Query: 683 LNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGV 742 F P + + + + + E + + + + Sbjct: 1251 QRFFAAPQAMVGGPVPDPVLNLDNR-EIVQRHAFALMLSLFQQERIEMPEADGDAQASNI 1309 >UniRef50_UPI0001C373E9 helicase n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C373E9 Length = 1588 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 120/837 (14%), Positives = 234/837 (27%), Gaps = 130/837 (15%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHD 60 +++ R+ S V++ + C C E +L KG E L Sbjct: 458 LFIEPRKT-YLDSKVFKFSVCRSCGEIYLTGYTAKG-----------EDGLNY------- 498 Query: 61 ATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCS 120 F + + LD I Sbjct: 499 -----------FSSECSVDPLSPKKTYMEYYLLDAGKFGIDKDMPSETIDENIISNTFTL 547 Query: 121 ASGCGYRGMS--GKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRG 178 C ++ G + + I +D+ + S Sbjct: 548 CGKCRAIWRRFSAGPSVKKCSCGSEYCTSII----------KAADKKYLKLNEFSNSVTV 597 Query: 179 RRLITFTDSRQGT--ARMAVRMQQEAERSRLRGSVVEILSW-HQRTQTSTAPNANADLEK 235 ++ ++ DS M Q A S + ++ + T + DL Sbjct: 598 KKCLS-CDSSANAGNVLRDFYMGQSAAASVIGTALYGEIPSSKNVIHTVKKASPEKDLFG 656 Query: 236 LAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVN 295 +A Q + E ++ S+ +A + ++ E Sbjct: 657 FSAMQPQTIVKNETHKLAKQYLIFSDSRQEAAHFAVYFDITYHALLRRRILLEVLKEHSA 716 Query: 296 ELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQV 355 E + + + M + E + + NSLE G++ Sbjct: 717 EYRGGVLPSVLCRHLEAAFSKYNIYVPDRRKEEALMTIMNEMVTDER--NSLEKLGIISF 774 Query: 356 GYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRES-----NFTQLDDELKNWIGS 410 Y+ K+ P+ + T+ + V D + R+ T L D+ K + Sbjct: 775 RYK--HKLGDLPVFPNGETNTVIE------VLADGFRRKRAIKYETITDLSDDDKEFFQF 826 Query: 411 RFSSKFVRNP-ESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTW 469 + + + E++ + + W R + + KL G +IN + Sbjct: 827 SSAVQTIAPSKENQSEKFSSRSTWTSDRENICINYMTKLTEKMNG----TPWDRGVINDF 882 Query: 470 LKEAW-AQLTGPLAVLKPDGNRFY-LPKEHMTFSLITD---AWICPVTNKILDTAFKGLT 524 L + W ++ D + L E M +S+ +D ++C +I G+ Sbjct: 883 LLQLWENVFVRNESIETYDNVGYRMLIDEFMVYSVYSDDLETFVCSKCGRITAKNADGVC 942 Query: 525 PYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQL 584 P F + MP R + + Sbjct: 943 P-----------------EFRCKGTLMP-----------------FDRSALEKNHYFRVY 968 Query: 585 RSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVD 644 DI+D EH+AQ E+ + Y+ F N +NVL+CSTT EMGVD Sbjct: 969 NE----LDISD--------LIVKEHTAQLDIEKAKEYQDKFVNKAINVLSCSTTFEMGVD 1016 Query: 645 TDRVMTLASRSQQATIPGPEWHLNDELVVRS----------LGYKTVELNEFILPAKATN 694 + T+ ++ + + R + +LN + P K Sbjct: 1017 VGDLETVFMKNMPPSP--ANYIQRAGRAGRRTDSAAYALTFCRLSSHDLNFYRYPEKMIK 1074 Query: 695 AVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVA 754 ++ + + F E+ S ++ ++ + R Sbjct: 1075 GHILPPSFKVTNE-KIVQRHLNACWLSEFFRLVPESFSTVDGFVLSEYYGKFRDFIESRP 1133 Query: 755 LALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAA 811 L+ + + +L E LD L D + I +++A + + Sbjct: 1134 DGLMKILYDSIPYELHSKIEKWLDELVSDDGKLYEAYLQTVSDIEQLENYAKELVES 1190 >UniRef50_Q7NH01 Gll2736 protein n=2 Tax=Cyanobacteria RepID=Q7NH01_GLOVI Length = 1887 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 101/789 (12%), Positives = 191/789 (24%), Gaps = 138/789 (17%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLARDKKGK-----LVQWENKGGDEFSLQDEV 55 +Y + C+C + + C +C +L +Q +E+ Sbjct: 579 LYPMGEERCECSASTAPLYLCRNCGADYLRFVGGNPNDPAAGPLQPSASNSEEYEWLLYD 638 Query: 56 PVEHDATEEKVEKENSFQPPLIIAAGETSEAGYTLQRL------DRQTRRIGVINNDSIP 109 P + T + E+E + + + QRL D T V Sbjct: 639 PARFELTADIEEEEEEAGNNTLQRSRSRRQPTQMRQRLVREGSFDPHTLAFSVDTTTYPL 698 Query: 110 LIINDIEQVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGV 169 + G G LG V + ++E + + Sbjct: 699 RATLAPARTQCLCCGGSAGSRNV--ITPVALGTSAAVKVMGEGLVEALAEENKNRPN--- 753 Query: 170 GPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNA 229 RL+ F+DSRQ A A + + R+R +V +L+ H T Sbjct: 754 -----HDGKERLLVFSDSRQDAAHQARFIHFASRYDRMRRRIVRLLNGHGVL---TIQRM 805 Query: 230 NADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRT 289 L + RE+ Y E L++ I V+ Sbjct: 806 VELL-----GEEGVRERDNPYVPEENNSWLPD-----ETLQRIRVWEEAPLLDEIAVNAG 855 Query: 290 WTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSE---MLLFREFMRRPKRTNS 346 + + L + + +Y + G L E L E R + Sbjct: 856 YRATLINLGLVSVTYDRLSEYVQARGSALAKALGVTLSQLEHICRCLLDEMRVRGCLSRE 915 Query: 347 LETQGLVQVGYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKN 406 L Y + +W ++ Sbjct: 916 LLRFHPAHPSYPA--------------YMRAAEWER----------------RVKRPQGY 945 Query: 407 WIGSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDII 466 S + + + N W + R G L ++L A T+D + Sbjct: 946 AATSEGNPAAYLDSTQVESGIKLNNAWRRPRIGGKGPSLERILKHLINCFGGAAPTVDRM 1005 Query: 467 NTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPY 526 L L ++ + + + A + Sbjct: 1006 VELL----QFLKDGSYLVAFELLGYRERARLLQVQ-----------------AEQVRLKL 1044 Query: 527 LPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRS 586 + H+ ++ P D + R + Sbjct: 1045 VTAHVRMHCRVCGFVLAEAPERFPCPRCHGYFIRWVDAEDNRTVRRIY------------ 1092 Query: 587 ENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKN----GQLNVLNCSTTMEMG 642 E EH+AQ + E FK ++N+L CS T+EMG Sbjct: 1093 -----------SEQFVPLIAREHTAQIPGDIRVQLENDFKASAEVSKVNLLACSPTLEMG 1141 Query: 643 VDTDRVMTLASRSQQATIPGPEWHL---------NDELVVRSLGYKTVELNEFILPAKAT 693 +D + + R+ + LV+ + + PA+ Sbjct: 1142 IDVGGLDAVILRNVPPRPD--NYAQRGGRAGRRTRVGLVLGYARSTPHDQYFYDKPAEMI 1199 Query: 694 NAVERVKDIQIHKQ-----------LNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGV 742 + + + + + + + E + I V Sbjct: 1200 SGEVPAPALALGNRDVILRHLNAIAFGTAEPGLAGKMVEYVSPA-GEINQQAVDALIASV 1258 Query: 743 HYTDRYLQN 751 Y + Sbjct: 1259 TAQQEYALS 1267 >UniRef50_Q3IPC2 Predicted helicase n=3 Tax=Halobacteriaceae RepID=Q3IPC2_NATPD Length = 1767 Score = 189 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 117/946 (12%), Positives = 241/946 (25%), Gaps = 192/946 (20%) Query: 16 YEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHDATEE-----KVEKEN 70 Y ++FC C + + + K + +L V E D E ++E Sbjct: 512 YPLSFCRGCGQEYYTTVVDQEK-------NVTQGALSTFVDTEEDEEEAYLMRGDWDRET 564 Query: 71 SFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCSASGCGYRGMS 130 + P + Y T + +E C A+ Sbjct: 565 APLPDEWLNDNGQLRDTYVEAEPRPATYCPECDQLTPGRVEQGQLECGCFAAQGVEVMRV 624 Query: 131 GKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQG 190 + G + +L TF Sbjct: 625 NQPFLFCPNCGVHYTRRV--------------------------KNEFNKLFTF------ 652 Query: 191 TARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARAKQAREQAEEY 250 + + L G+ + L Q+ + + N Q Sbjct: 653 -----GTVGRSTATDVLIGNTMRNLPDDQQKTIAFSDNR----------------QDTAL 691 Query: 251 RSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERADIRGPVLQY 310 ++ + + + + + A + T L + + + +E I + Sbjct: 692 QAAHLNNLYQRVRFRRSLY--HTLAEGDDVSLTTLGNDVFDLLDDEEALPPAIDTGMFG- 748 Query: 311 NHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGLEKIHKSPLHW 370 P + L + + + SLE GL+ V Y+ L+K+ W Sbjct: 749 -----PSAEDRQNYSDYLLFNTILELGREQQRTQQSLEDVGLIDVEYENLDKLADVDDVW 803 Query: 371 QE----KGLTLDDWRDFLKVTLDHYVRE---------------SNFTQLDDELKNWIGSR 411 +++ LD + R N DE ++ G Sbjct: 804 DSIPVLSNADPTVREEYVHGFLDIFRRSIAIDHESTTNFTDFKRNVINQLDEEVHFHGQE 863 Query: 412 FSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLK 471 F + V ++ R R + R + T A IIN+ + Sbjct: 864 FFNFPVGYSDTASTSGRHRVR----RLTHPRSRHVRWTARALDVDTDTA--KAIINSVID 917 Query: 472 -----EAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPY 526 E LT +T + D +CP Sbjct: 918 LISDDEVLKLLTQESLKYTGKVYMLNHSAIRVTHADPEDVRVCPKCGTP----------- 966 Query: 527 LPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRS 586 T + D+ ++ + Sbjct: 967 -TTRDELDVCLNYSCDSITPEETDL----------------------------------E 991 Query: 587 ENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQ-LNVLNCSTTMEMGVDT 645 + + D+ + EHS Q +E+ + E F+ G+ +N + + TME+G+D Sbjct: 992 SSYFYDLYTESFDDAVDIIAGEHSGQVENEKRKQLESDFREGEKVNTIVSTPTMELGIDI 1051 Query: 646 DRVMTLASRSQQATI--------PGPEWHLNDELVVRSLG---YKTVELNEFILPAKATN 694 + + R+ + + + + + P + Sbjct: 1052 GDLSNVYMRNVPPNPSNYAQRSGRAGRQNQPSLVTTFCGRGFGRGSHDQYFYRNPERIIA 1111 Query: 695 AVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVA 754 ++ + + L + E + ++ + Y P Sbjct: 1112 GEISPPTFLLNN------QDLVEAHINALVLEQIELKFQSKPRQMLVIEEGSDYEIMPDY 1165 Query: 755 LALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWM------SIADFQDFADQW 808 A L ++ + K+ + +++D G ++ + + + + W Sbjct: 1166 RADLEDAVKNNRQKIIQAVKQAFARE-REQDTVGEWFTDAFIERQVDNFVENLDEAFEPW 1224 Query: 809 FAAALGRPVEL--------TVFDSPRDIPHHRKLTVTFEDGQVLKIRF-------DQGM- 852 EL T S +D + ED + K RF QG Sbjct: 1225 RREYTRLSRELRRLNQLLATEGGSYQDRIERNAIEDRLEDMRSGKKRFYTYQYLRSQGFL 1284 Query: 853 -GYWRINFSSQWHYFDFRDDVSF-QLVKMAQACKEGNVANSEESWA 896 Y S+ + DD+ Q +++ +V + E +A Sbjct: 1285 PNYGFPRQSTTLTFTSREDDIQRDQTRAISEFAPGNHVYYAGERFA 1330 >UniRef50_A1U8P4 DEAD/DEAH box helicase domain protein n=2 Tax=Alteromonadales RepID=A1U8P4_MARAV Length = 685 Score = 188 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 94/210 (44%), Positives = 118/210 (56%), Gaps = 6/210 (2%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHD 60 +YV QR CDCGSPVYE FC+DC PHL A L Q DEFSLQ E D Sbjct: 470 VYVQQRGKCDCGSPVYEAGFCDDCKTPHLTAEHAHPYLRQASPYVIDEFSLQ-----EDD 524 Query: 61 ATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCS 120 + + + + T + + LD T +G ++ ++ I E+ Sbjct: 525 SDDSGISERAGSSLKGRAVIAPTPHEAFVSEDLDLDTAELGKLDAENSITISQADERDAI 584 Query: 121 ASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRR 180 CG G + R++ LG PFYV+N VPTVLE+C D + ++ G P+SLP RGR+ Sbjct: 585 CVNCGSAGKTAGGFLRKSYLGAPFYVSNAVPTVLEFCPDPSREDCD-GASPESLPARGRK 643 Query: 181 LITFTDSRQGTARMAVRMQQEAERSRLRGS 210 LITFTDSRQGTARMAVRMQQEAERSRLRG Sbjct: 644 LITFTDSRQGTARMAVRMQQEAERSRLRGL 673 >UniRef50_C6PTC5 Helicase domain protein n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PTC5_9CLOT Length = 678 Score = 182 bits (460), Expect = 7e-44, Method: Composition-based stats. Identities = 55/287 (19%), Positives = 100/287 (34%), Gaps = 46/287 (16%) Query: 580 LIAQLRSENVWTDINDRVVEGGFYYR------------TAEHSAQQSSERLQSYEKMFKN 627 + + R + T++N+R YYR EH+AQ +S +K F++ Sbjct: 30 ICPEFRCDGELTELNNRQPSKYDYYRKLYSDRRIVPMIAKEHTAQLTSTAASELQKKFES 89 Query: 628 GQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSL----------G 677 G++NVL+CSTT EMGVD ++ + R+ + R Sbjct: 90 GKVNVLSCSTTFEMGVDVGQLEAIFMRNVPPET--ANYIQRAGRAGRRGSSTAFALTFAR 147 Query: 678 YKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNT 737 ++ +LN + P K + + I++ + + F H E + Sbjct: 148 RRSHDLNYYSNPTKIIHGAIQPPYIEVKNE-KIVKRHMYSVIFAYFFRHHPELFKNTEDL 206 Query: 738 RITGVHYTDRYLQNPVALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMS 797 I D Y A + +L +L + + + +K +W Sbjct: 207 FIEN---EDMY-----ATKEVRELLESYPKELITSLKNIVPSSLHEK-----LGLDNWSF 253 Query: 798 IADFQDFADQWFAAALGRPVELTVFDSPRDIPHHRKLTVTFEDGQVL 844 I + R VE+ D+ ++ +R FE GQ + Sbjct: 254 IDELCGEEGSL------RKVEIEYRDNLEEL--NRIKQEKFEKGQNI 292 >UniRef50_A4SC91 DEAD/DEAH box helicase domain protein n=1 Tax=Chlorobium phaeovibrioides DSM 265 RepID=A4SC91_PROVI Length = 1887 Score = 180 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 100/806 (12%), Positives = 205/806 (25%), Gaps = 140/806 (17%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLARD-----KKGKLVQWENKGGDE------- 48 ++ R NC CG V ++ C+ C E L G+ + E Sbjct: 575 LHGYHRVNCSCGGKVLDLLVCSVCGEVFLGGYKYGMEGGHGRRYLTSDMPAIEKMPDAAT 634 Query: 49 -----FSLQDEVPVEHDATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVI 103 P + + + N G+T G+ L+ T + Sbjct: 635 ARLVHGEYAIFYPKKGNPIGARG--RNDGTRYEWRRGGQTVRCGWRNAWLEVYTGSLADY 692 Query: 104 NNDSIPL---------IINDIEQVCSASGCGYRGMSGKQ---PFRRALLGGPFYVTNIVP 151 CG P R G + Sbjct: 693 ATQEGQEVEGWLYTVDNPESQALPPVCPSCGTDQRKASSFPTPLRSHRTGFQRASQVLAS 752 Query: 152 TVLEYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSV 211 T++ GP +G +L+ F+DSRQ A+++ M+ + R +R ++ Sbjct: 753 TLVREI------------GPVGDAAKG-KLVLFSDSRQDAAKLSAGMELDHYRDMVRVAM 799 Query: 212 VEILSWHQRTQTSTAPNANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQ 271 ++ TQ + ++ + ++ G+ D L + Sbjct: 800 IDA-HSDFITQFAATLRYWINIHNRRSGEFRSLVN-------GLNDGFPLEEDTTSIATD 851 Query: 272 AYQAATGGKAATILVSRTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEM 331 + A + +M R D + + Sbjct: 852 DEELAYMFRDMHSSYYDALMDMAAGASGRVDPETQSDIRWIIGQYPHEVPFRSLCDAIFV 911 Query: 332 LLFREFMRRPKRTNSLETQGLVQVGYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHY 391 L + ++ ++ E + T + LK D Sbjct: 912 RLASVGICPGGPRYEYSRYPRERMDHEWWECFSWDVPGRIRENATPEQREHILK-LKDSL 970 Query: 392 VRESNFTQLDDELKNW--IGSRFSS-KFVRNPESK-----------DPEDNQNRRWPQIR 437 +RE T + ++ + +G +++ + V P+ K WP + Sbjct: 971 LRELTLTLFSNSVRTFESLGLGYATFRPVGEPDDKLVQCTNAIIRNTCLKRNFHLWPYFQ 1030 Query: 438 NGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEH 497 +L + ++ + + L+E+ L G A L D +L Sbjct: 1031 ---RDGGELELWPRHIPYCDLSGVEPNEVLRQLRESCVGLRGEHANLGIDPEHLWLHLSD 1087 Query: 498 MTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKL 557 S + C G + P + Sbjct: 1088 QDLSP-RSGFKCLKCGAYYMNYAGGYC---------------------IDCINEPLVQAP 1125 Query: 558 DRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQS--- 614 + DY L A G F E + Q Sbjct: 1126 LDAHMDYYRYLTGASG--------------------------GAFRLHCEELTGQTDMSD 1159 Query: 615 -SERLQSYEKMFKNGQ------LNVLNCSTTMEMGVDTDRVMTLASRSQQAT-------- 659 S R + ++ +F +G+ +++L+ +TTME GVD ++ + + Sbjct: 1160 KSSRQRWFQGIFLDGEAKEPQGIDILSVTTTMEAGVDIGSLVAVEMANMPPRRFNYQQRV 1219 Query: 660 IPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHK----QLNGPLSQF 715 + + ++ + + P + T + + + + Sbjct: 1220 GRAGRRGAPLSIALTFCRGRSHDDFYYQRPEEITGDPSPAPYLDMTRKEIVKRVVAKEVL 1279 Query: 716 GQRFWDVLFNDHEEAQSLMNNTRITG 741 + F + RI Sbjct: 1280 RRAFSASFPEGIPDVAGENGRERIRE 1305 >UniRef50_D1BVL7 DEAD/DEAH box helicase domain protein n=1 Tax=Xylanimonas cellulosilytica DSM 15894 RepID=D1BVL7_XYLCX Length = 1525 Score = 177 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 112/851 (13%), Positives = 224/851 (26%), Gaps = 183/851 (21%) Query: 1 MYVNQRQNCD-CGSPVYEVAFCNDCNEPHLLA---RDKKGKLVQWENKGGDEFSLQDEVP 56 + ++ + C C +PV+E+A C C H+ +D + + + Sbjct: 449 VTFSRHKECPTCEAPVFEIAACKRCGALHVPGTVEKDGGAERFRPLDGVISRVHWALVGE 508 Query: 57 VEHDATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIE 116 E+ + L G Sbjct: 509 ATVLDDEDDEAHLEDAGGS----------SRSNEATLCTDCAAFG-------------PA 545 Query: 117 QVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPG 176 + C + + L +CQ + ++ Sbjct: 546 GAATCYSCASSSVRQV-------------LRTDAGRELNHCQSCGARSSRQV-------- 584 Query: 177 RGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKL 236 RRL + +D A + L S+ E L + Sbjct: 585 --RRLTSGSD---------------ATAAVLASSLYEHLPADPSVYFPGQGRRLL----M 623 Query: 237 AARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNE 296 + ++Q A Y Q + +A + G E Sbjct: 624 FSDSRQQAAFAAPYLQNSYGALV-----QRAMIVRAIRKMRG----------------EE 662 Query: 297 LKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVG 356 L + + + N + + + RE + +RT S+E GL V Sbjct: 663 LAGSDLMMTTLTESNKADIFDPYATALAKRIEIATWIQREMIEGDERT-SVEGTGLATVR 721 Query: 357 YQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKF 416 + P+ GLT D+ L + +R +E ++ + + Sbjct: 722 --LMRPRTPPPMPLTRLGLTGDEAWALLDQLVQ-TLRIQGAVGPVEENVDFTVDALAPRN 778 Query: 417 VRNPESKDPEDNQNRRWPQIRN-GNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWA 475 ++ D + + + + +R + L A L W Sbjct: 779 REVFVREEQSDAKQSILAWVPSSRSTGNRRSDYLTRVLDALGSTA----DCRDLLTGIWR 834 Query: 476 QLTGPLAVL-------KPDGNRFYLPKEHMTFSLI---TDAWICPVTNKILDTAFKGLTP 525 LT AV K G + + + + +S + W C + +G+ P Sbjct: 835 FLTTGNAVPWLKLTNDKRRGPVYRVDPDMLRWSSASDDDNVWRCDRCRRFASVNVRGVCP 894 Query: 526 YLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLR 585 +H V+ +P + Sbjct: 895 TNGCRGQLQH---------------------------------------VTAEPDPSDHY 915 Query: 586 SENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDT 645 ++N + G R EH+AQ + + ++ F G++NVL+CSTT E+GVD Sbjct: 916 AQNY-------LALAGHPLRAEEHTAQLTGDVASQLQEQFVAGEVNVLSCSTTFELGVDV 968 Query: 646 DRVMTLASRSQQATIPGPEWHLNDELVVRS----------LGYKTVELNEFILPAKATNA 695 + ++ R+ T + R ++ + F P Sbjct: 969 GELQSVMLRNVPPTT--ANYVQRAGRAGRRTDSAALVLTFAQMRSHDQAMFQQPLAMIQG 1026 Query: 696 VERVKDIQIHK-QLNGPLSQ---FGQRFWDVLFNDH---EEAQSLMNNTRITGVHYTDRY 748 R + +++ + F L N +TG + Sbjct: 1027 TVRAPIVVDDNARVDRRHAHSIAIATFFRYALTRHDREFRNVADFFANGSVTGHELLKEF 1086 Query: 749 LQNPVALALLGSILRPLKT-------KLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADF 801 L P + ++ + + DG VT+ G +++ Sbjct: 1087 LSPPPTA--VVEAIKRVLPSTVHEEIGIDDGGWVTVLLDLVQVAAEGYDAEASYVAEQQQ 1144 Query: 802 QDFADQWFAAA 812 + A++ + A Sbjct: 1145 KAVAEEKYQLA 1155 >UniRef50_A5UPV6 DEAD/DEAH box helicase domain protein n=1 Tax=Roseiflexus sp. RS-1 RepID=A5UPV6_ROSS1 Length = 1711 Score = 173 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 118/861 (13%), Positives = 209/861 (24%), Gaps = 150/861 (17%) Query: 15 VYEVAFCNDCNEPH-LLARDK-KGKLVQWENKGGDEFSLQDEVPVEHDATEEKVEKENSF 72 ++ + FC +C + + L A D+ G++V E + + +E Sbjct: 447 LFPLVFCRECGQHYALCAYDEEHGQVVPRHPMLRGEDVTEPARAGYLLIGADAWSEELED 506 Query: 73 QPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCSASGCGYRGMSGK 132 P + + L ++ R P + G Sbjct: 507 TLPDTWFNVRRNG-----RTLKKEYREFAPKRLYVRPDGQTFDPERV--------GARPG 553 Query: 133 QPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQGTA 192 L PF S +T + Sbjct: 554 GAVDAWFLAAPFLT------------------------CLSCGA------VYTRRDRDDF 583 Query: 193 RMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARAKQAREQAEEYRS 252 R R+ E + + + + D + + Q ++ Sbjct: 584 RKLARLSSEGRSTATTLISLSAIEA--------MHTTDLDPKARKLLSFTDNRQDASLQA 635 Query: 253 WGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERADIRGPVLQYNH 312 D A +S +A +A+ + ++ + V +Y Sbjct: 636 GHFNDFAAVSLLRAAIAAALQKASPSNPLTHLTIAP--AVFRELNLPQEAYARTVGEYGG 693 Query: 313 YLKPEVFNENGGPLKLSEMLLFREFMRRPK-RTNSLETQGLVQVGYQGLEKIHKSPLHWQ 371 E +F + R + +LE GL+++ Y L + WQ Sbjct: 694 A----RRRNEEVLTAYLEYRIFEDLRRSWRVTQPNLEQCGLLRIDYLDLHDLCADDRPWQ 749 Query: 372 EK---GLTLDDWRDFLKVTLDHYVRESNFTQLD--------DELKNWIGSRFSSKFVRNP 420 T D R+ L ++R + L+ + Sbjct: 750 RHPVLAATPPDQRERTIRALLDHMRRELAIDAPCLDPEQQPELLRRVDAALKEPWVFDEA 809 Query: 421 ESKDPEDNQNRRW---------PQIRNGNVSHRLAKLLMLGAGFK-TVNAATIDIINTWL 470 E + R+ P R+ + R + L A + L Sbjct: 810 EKRPNGLRMATRFVLPGDDTNVPGARSLSRYSRAGRFLRSSAAWSALEAPLDDQEYAALL 869 Query: 471 KEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTH 530 + L G +L R L + L TP LP Sbjct: 870 TTLFEILMGA-GILVDVTVRRGLRAFQIR-------------RDALLWLPGDGTPPLPDP 915 Query: 531 ISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVW 590 I + +T D +Q A A A + Sbjct: 916 IRSQRMTTVARAA-------------SDDTQNGAARTPANA-----------------FF 945 Query: 591 TDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMT 650 + R E EH+ Q + E Q E+ F+ G+L VL CS TME+G+D + Sbjct: 946 SRFYLRPPERLLRIEGREHTGQVTQEDRQERERRFREGELPVLFCSPTMELGIDIADLNA 1005 Query: 651 LASRSQQATIP--------GPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDI 702 + R+ T ++ + F P I Sbjct: 1006 VHMRNMPPTPANYAQRSGRAGRSGQPALVITYCSTASGHDQYFFQRPKDMVAGAVAAPQI 1065 Query: 703 QIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSIL 762 + + L H A L D L L + Sbjct: 1066 DLTNE--------------DLLKAHVHAIWLAETGLDLKRSMLDLIDAGAPDLPLKSEVQ 1111 Query: 763 RP--LKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVELT 820 L F + D + + A + F A R +L Sbjct: 1112 EHIMLDDSRRAACVARARRAFGGLLASLPGEWFDEGWLERVINDAPRHFDEACNRWRQL- 1170 Query: 821 VFDSPRDIPHHRKLTVTFEDG 841 D+ + R++T + G Sbjct: 1171 YTDARAQLNEARRITDDWHRG 1191 >UniRef50_C7HAN6 Putative helicase n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7HAN6_9FIRM Length = 2106 Score = 173 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 97/883 (10%), Positives = 230/883 (26%), Gaps = 159/883 (18%) Query: 16 YEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHDATEEKVE---KENSF 72 V C DC + + E + +L+ A E+ V + Sbjct: 472 LPVVNCRDCG---ITGWV----TILNERQNATIVNLEAFYNQYFKADEKVVMLFPHPHEN 524 Query: 73 QPPLIIAAGETSEAGYTLQRLDRQ-------TRRIGVINNDSIPLIINDIEQVCSASGCG 125 P ++ A + +D TR + ++ I + CG Sbjct: 525 VPTGMLPARICPDCLQVKLGIDGSSECASCGTRMVDILIPSPIRTTGPKQHKQYICPCCG 584 Query: 126 YRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLITFT 185 R R A ++ + F+ Sbjct: 585 SRRGLSLMGVRSATEISASISQMFASRF----------------------NDDKKTLAFS 622 Query: 186 DSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARAKQARE 245 D+ Q A A R LR ++ + Q+ AD + Sbjct: 623 DNVQDAAHRAGFFNSRTWRFGLRTAIQRYCAECGSGQSL------ADFQAGFVDYWHLHM 676 Query: 246 QAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERADIRG 305 EE+ S+ +P +A E + + + K A IL+ + E+ + Sbjct: 677 TDEEFVSFFIPPNLTWKRAYEEMTQN--RKLSDDKQAHILMHEIEQRIQYEIMLEYGLTS 734 Query: 306 PV-LQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGLEKIH 364 + + +++ + R + G++ Sbjct: 735 KIGRTLERSACSVLSFSPEDIEQIAAAVQLR----------VVNELGIMS---------R 775 Query: 365 KSPLHWQEKGLTLDDWRDFLK--------VTLDHYVRESNFTQLDDELKNWIGSRFSSKF 416 + + +Q + W + L+ V ++ + + L ++ W+ + S + Sbjct: 776 EDRIIFQRMVIG---WLNLLRCNGAFKDVVFDEYTINDGKSYMLSNDRNRWLPGQQSGRN 832 Query: 417 VRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQ 476 + ++ + + + + +N I L+E+ Sbjct: 833 IPRFIAEYLGKSHPTSEFDLPSSRRYTDWIAFCCTESILDELNF--RAISKLILEESVKN 890 Query: 477 LTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHL 536 + + L K + + C + + + L Sbjct: 891 GIVVSVPSSANYKVYGLNKSRVFLTNDVIQLRCEHCGAVYSFSAESL------------- 937 Query: 537 TLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDR 596 +W+ + + +S + + R Sbjct: 938 ----------------PLWENAPCPRSAC------------GGKLVEYKSSGI--NYYGR 967 Query: 597 VVEGGFYYR--TAEHSAQQSSERLQSYEKMFKNGQ-------LNVLNCSTTMEMGVDTDR 647 + G R EH+ + EK FK + NVL+C+ T+EMG+D Sbjct: 968 LYSTGDLARINAREHTGLLERPDREQLEKDFKRSKENRSNWDPNVLSCTPTLEMGIDIGD 1027 Query: 648 VMTLASRSQQATIPGPEWHLNDELVVR---------SLGYKTVELNEFILPAKATNAVER 698 + T+ S ++ R + +L + P + + Sbjct: 1028 LSTVILCSMPP--AQSQFLQRVGRAGRKDGNALTLAIANARPHDLYFYADPLEMISGSVT 1085 Query: 699 VKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRI---TGVHYTDR-------Y 748 I + + + I +D Y Sbjct: 1086 PPKIFLRASAVLERQFMAFCMDSWVRKGIPDDAIPDKVGIILKKLDARPSDMFPFNFLNY 1145 Query: 749 LQNPVAL---ALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFA 805 +Q+ ++ + + L + ++ + + + S+ Q+ Sbjct: 1146 VQSTLSRQINSFVQMFSAYLDESSKEELQIFARGTGTTESSMHIKILDAFESLKKQQNSL 1205 Query: 806 DQWFAAALGRPVELTVFDSPRDIPHHRKL-TVTFEDGQVLKIR 847 +L ++ + + P+D + +++ + E+ +L + Sbjct: 1206 -HNSVNSLKVMIQ-QLENKPKDSSYDKEIKELKGEEAALLTVL 1246 >UniRef50_C8W5N0 DEAD/DEAH box helicase domain protein n=2 Tax=Peptococcaceae RepID=C8W5N0_DESAS Length = 1741 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 91/749 (12%), Positives = 194/749 (25%), Gaps = 180/749 (24%) Query: 5 QRQNCDCGSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHDATEE 64 + C+CG +YE+ C ++ A +K + + D Sbjct: 567 PKDKCECGGKIYELFNHIKCGALYIRAFVQKNEGQPY---------WYVFPKKGLDGDVN 617 Query: 65 KVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRI----------------GVINNDSI 108 +++ + P G+ + + LD T ++ Sbjct: 618 SLQETLLYVVPKQYQCGKNDK----IGSLDPFTGKLYLTLQDEETLLDVVYYNKSEKGKK 673 Query: 109 PLIINDIEQVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEG 168 C K PFY N+ + E + Sbjct: 674 TDAKGMPFNFGVCPKCKKPMPLKKPVDLSTKGNIPFY--NLTKSQFELQPPKS------- 724 Query: 169 VGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPN 228 L +G++++ F+DSRQ A++A+ + + ++ R +V+ Sbjct: 725 ----GLINQGKKVLLFSDSRQNAAKLALDLSKSSDADAFRQAVM---------------L 765 Query: 229 ANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLE--QAYQAATGGKAATILV 286 A+ LE A + + S ++ + + A + A Sbjct: 766 ASLLLEVDGKEHSLADLYPAFLDACNQNNLTFFSGTSKDKFDGDKRKFAKSKANAEKRGR 825 Query: 287 SRTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNS 346 + ++ ++ + D L P F + G Sbjct: 826 TINYSSLLGDYGALPDNYYEQLLTFFTESPRSFKDIG----------------------- 862 Query: 347 LETQGLVQVGYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKN 406 G + L+ + ++ +++D + + + L + +DD Sbjct: 863 ---IGFLAPLSTVLD---LCMEYLEDDDISIDKAKLYQLLVLMF------WEVMDDSAAL 910 Query: 407 WIGSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDII 466 + + SK + + + + R+ ++L Sbjct: 911 GETIQDDVRKGLPGRSKSSNFGLSFDFLTALDKGLLQRIQEVLC----------HDAITT 960 Query: 467 NTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITD---AWICPVTNKILDTAFKGL 523 L + L NR+Y+ + L ++ + C K+ Sbjct: 961 RKILDK-----VRDLFFASSSANRYYIKLSAVKIELASEDFVWYRCVKCGKLSPFKIGDY 1015 Query: 524 TPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQ 583 + + F ++ + K Sbjct: 1016 CGACFDSSDLVSIGEEELSRFDFWRIPVLNALKKI------------------------- 1050 Query: 584 LRSENVWTDINDRVVEGGFYYRTAEHSAQQSS--------ERLQSYEKMFK--------N 627 E T EH+AQ S R + YE F+ Sbjct: 1051 ---------------ESIHTIDTEEHTAQLSHKEIRSDTWSRTEKYEMRFQDINAGEHGE 1095 Query: 628 GQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRS----------LG 677 ++VL+C+TTME+G+D + + R+ + R Sbjct: 1096 DAIDVLSCTTTMEVGIDIGSLTAIGLRNIPP--MRENYQQRAGRAGRKNAGISTIVTYAS 1153 Query: 678 YKTVELNEFILPAKATNAVERVKDIQIHK 706 T + + F P + + R I Sbjct: 1154 GGTHDSHYFQHPDEMISGAPRKPWIDRSN 1182 >UniRef50_A9AUS0 DEAD/DEAH box helicase domain protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AUS0_HERA2 Length = 1695 Score = 172 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 89/708 (12%), Positives = 178/708 (25%), Gaps = 123/708 (17%) Query: 15 VYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHDATEEKVEKENSFQP 74 ++ + FC +C + + N +L P E S Sbjct: 451 LFPLVFCRNCGQHY-----------YQCNYDAHRQTLLPRQPF-------AQSHEQSTSM 492 Query: 75 PLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCSASGCGYRGMSGKQP 134 P GE + ++ L + + + D +Q Sbjct: 493 PGYALLGEDVWSDDAIEMLPDSW---FNKSTNGRGTVKKDFKQFIP-------------- 535 Query: 135 FRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQGTARM 194 +R + + N + G +L AR+ Sbjct: 536 -QRLTVRTNGSLGNEHDPTAWFIPSPFLSCLNCGTLYTKRESDFSKL----------ARL 584 Query: 195 AVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARAKQAREQAEEYRSWG 254 + R + +L+ Q A + Q ++ Sbjct: 585 SSE---------GRSTATTVLALATVQQLRQAL--PEQPAAQKMLSFTDNRQDASLQAGH 633 Query: 255 MPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERADIRGPVLQYNHYL 314 D ++Q +A + + + +T + + E ++ Sbjct: 634 FNDFVSVAQLRAA-------IYSAVRQQPAGRALDYTTIAQAVFEALNLPQTAYAKEETT 686 Query: 315 KPEVFNENGGPLKLSEMLLFREFMRRPKR--TNSLETQGLVQVGYQGLEKIHKSPLHWQE 372 P + L E +RR R +LE GL+Q+ Y GL+ + + W Sbjct: 687 LPNKRAKIDDALIRLIEYRIYEDLRRSWRVTQPNLEQVGLLQIDYDGLDDLAQQTDLWAR 746 Query: 373 KGL----TLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVRNPESKDPEDN 428 L L+ L++ +R + + ++ Sbjct: 747 HELLAATPSHQREQILRTILNY-MRNGLAINAPCLQEQ---EQKRMVTSIEALLQESWQM 802 Query: 429 QNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDG 488 R + + V + G +A + + W LT L+ Sbjct: 803 NEREFTSAKRFIVPTPDGRGSGDGQSLGASSALGRFLRAE---QTWPSLTKTLS------ 853 Query: 489 NRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHL-TLAQYDTFVAQ 547 + W P L + L T ++ Sbjct: 854 --------------EKEYW-----------------PLLEVLVEALVGNILTDVGTGASR 882 Query: 548 KVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTA 607 ++ + L R+ + AR + A + ++ + + Sbjct: 883 ELQISRDALLWRAGDGTPPPPNLARSRMLKGFSPAPRPINRFFQNLYQHMAHNLQAMESR 942 Query: 608 EHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIP------ 661 EH+ Q + + Q E+ F G L VL CS TME+G+D + + R+ T Sbjct: 943 EHTGQVAQAKRQDREQCFSAGTLPVLFCSPTMELGIDIGDLNVVHMRNVPPTPANYAQRS 1002 Query: 662 --GPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQ 707 + + F V I + + Sbjct: 1003 GRAGRSGQPALIETYCSVGSGHDQYFFDRQPAMVAGVVAPPQIDLVNE 1050 >UniRef50_C1XMC1 Helicase family protein with metal-binding cysteine cluster n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XMC1_MEIRU Length = 917 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 56/350 (16%), Positives = 102/350 (29%), Gaps = 65/350 (18%) Query: 556 KLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSS 615 + R + GL R + + + + ++ + EH+AQ S Sbjct: 103 FIWRPGDGSRPGLDPLRVRLRENA---EREANAFFSAFYRLTAQNLGGLEAREHTAQVPS 159 Query: 616 ERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIP--------GPEWHL 667 + + E+ F+ G+L VL CS TME+GVD + + R+ T Sbjct: 160 KEREQREEDFRAGRLPVLYCSPTMELGVDISTLNVVNMRNVPPTPANYAQRSGRAGRSGS 219 Query: 668 NDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDH 727 + + + + F P + + + L H Sbjct: 220 PALVFTYAASGNSHDQYFFRRPRLMVAGAVSPPRLDLTNE--------------ELIRSH 265 Query: 728 EEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRP 787 +A L A LGS L + D + L RP Sbjct: 266 LQAVWLAATG------------------ADLGSSLADILEVEGDEPTLAL--------RP 299 Query: 788 GNRPFHDWMSIADFQDFADQWFAAALGRPVELTVFDSPRDIPHHRKLTVTFEDG--QVLK 845 R +D A QD + ++ T + +G + Sbjct: 300 SVR--NDLQRPAAVQDALKRAKRVLADLMP---------ELEQAPWYTPAWVEGVMEQAY 348 Query: 846 IRFDQGMGYWRINFSSQWHYFDFRDDVSFQLVK-MAQACKEGNVANSEES 894 RF++ WR + + F + V + A+ + + + ES Sbjct: 349 ARFEEACERWRTLYKAAREQFQVQSRVILDASRSAAEKDQARRLRSEAES 398 >UniRef50_C7MQ55 Helicase family protein with metal-binding cysteine cluster n=2 Tax=Actinomycetales RepID=C7MQ55_SACVD Length = 2082 Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 107/863 (12%), Positives = 204/863 (23%), Gaps = 156/863 (18%) Query: 14 PVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHDATEEKVEKENSFQ 73 A+C C G + + +E + + Sbjct: 483 RYLPAAYCRVCG-----------------RSGWQTVATELGEELEGSPEKVWRTSVTDRR 525 Query: 74 PPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQ---VCSASGCGYRGMS 130 + E +R+D +T + +++ E+ CG Sbjct: 526 KLRTLLLARDDEPD--ARRIDPRTLAYSRDGEPGLSVLVTPDEEAATEQRCPSCGAD--- 580 Query: 131 GKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQG 190 R V+ + + G + + ++ + FTDS Q Sbjct: 581 --DAVRFLGSSVATLVSVALTQLF---------------GSNLISHGEKKTLVFTDSVQD 623 Query: 191 TARMAVRMQQEAERSRLRGSVVEIL----SWHQRTQTSTAPNANADLEKLAARAKQAREQ 246 A A ++ A + LR +++ + Q T+ A + DL +A + Sbjct: 624 AAHRAAFIEGRAFQFNLRSALLRAVGDRPRSLQDVTTALAASPTEDLYAIAP-----PDF 678 Query: 247 AEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERADIRGP 306 G + L + E+ L D+ Sbjct: 679 TRRLGFEGEWLDRDRGGRRRRLLGTRLTFQAHLEIGLRSRLGRTLELTGALAVDYDM--- 735 Query: 307 VLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGLEKIHKS 366 Y P R + + GL+ Sbjct: 736 --DLGRYATLARDAHENLPE--------RGMSLPDREAYEVWLLGLLD------------ 773 Query: 367 PLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVRNPESKDPE 426 R Q D G+R+ + Sbjct: 774 ----------------------RLRKRGGIAHQWLDAYVQRDGNRWPIWGGSPAGMQKF- 810 Query: 427 DNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKP 486 + R P + + S L G + + + L P+ L Sbjct: 811 -PRGRPAPVFYSTSTSGDFDSLRPRGESWLV---DWTERCLEVGRAEARALLEPVVRLLA 866 Query: 487 DGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVA 546 +G L + D A GL P I L ++ + Sbjct: 867 EGETPPLLRRTSQ----------------TDAAVFGLDP---ARIELIPLNNSELEHAHL 907 Query: 547 QKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRT 606 + I + + D R + ++R +N + + + + Sbjct: 908 RCPKCHHIQPVAPKRFDRWLSAPCPRMRCTGHLEPHRVREDNFYRRLYRSGRLR--HLVS 965 Query: 607 AEHSAQQSSERLQSYEKMFKNG----QLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPG 662 EH+A + E+ F NG NVL C+ T+E+G+D + T+ S T Sbjct: 966 HEHTALLDDDTRLEVERRFSNGSSPIDPNVLTCTPTLELGIDIGDLSTVGLASLPPTP-- 1023 Query: 663 PEWHLNDELVVRSLGYK---------TVELNEFILPAKATNAVERVKDIQIHKQLNGPLS 713 + RS G EL P + + Sbjct: 1024 ANYLQRVGRAGRSTGNALVLATVPSSPRELYYLSEPKHLIDGEVIPPAAYLSATELLCRQ 1083 Query: 714 QFGQRF------WDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALA--LLGSILRPL 765 F L + + + + + +++ A L L Sbjct: 1084 YLAYCFDRVASGDIRLDREMPRLLGALLDNGLAEGSWLRQFVDTVTKNAHVLAEQFLSLY 1143 Query: 766 KTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPV-------- 817 + + + + R + ++ + A Sbjct: 1144 GDAIDEEVRRAVRSFAAKGLRDKLARVV-FQWADQRKELEYRQGELATAIDSLETQKHLD 1202 Query: 818 ELTVFDSPRDIPHHRKLTVTFED 840 + V D R I +R LT D Sbjct: 1203 DTQVEDRRRWIGEYRALTHMLRD 1225 >UniRef50_C4UUG8 Helicase n=1 Tax=Yersinia rohdei ATCC 43380 RepID=C4UUG8_YERRO Length = 1986 Score = 171 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 95/775 (12%), Positives = 198/775 (25%), Gaps = 124/775 (16%) Query: 13 SPVYEVAFCNDCNEPHLLAR-----------------------DKKGKLVQWENKGGDEF 49 S E+ +C C L + + K V E + +E+ Sbjct: 631 SRRVELLYCECCATLFLGGKPSAFSVTSHRTELLPNDPDTEKLPEHAKSVMIERRSAEEY 690 Query: 50 SL-------QDEVPVEHDATEEKVEKENSFQPPLIIAA--------GETSEAGYTLQRLD 94 L + E ++ K A E Sbjct: 691 VLFMPTVDRFWPLGSEKLTDDDSFGKWREASYDPFTATITQPISPVKPLPETDIAGWFYS 750 Query: 95 RQTRRIGVINNDSIPLIINDIEQVCSASGCGYR---GMSGKQPFRRALLGGPFYVTNIVP 151 + + CG G + P R +G + Sbjct: 751 VPSGNFIPPKREQSSSKSPGSSLPFQCPACGTSYKYGKGKQSPIRGFRVGFAKTTQLLAS 810 Query: 152 TVLEYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSV 211 T++ Q E RL+TF+DSRQ A+ A+ ++ R + Sbjct: 811 TLMAELQKSGDQE---------------RLVTFSDSRQDAAKAALDLESGHHDDIRREIL 855 Query: 212 VEILSWHQRTQTSTAPNANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQ 271 + L + S E + S + + +++++ Sbjct: 856 IGSLKELVADKCSHEKLLIRLDEVTKRKKALDIIDDLNKLSDEQEKELNDLWKERKRIKE 915 Query: 272 AYQ-------AATGGKAATILVSRTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGG 324 + + + ++ +L + P +EN Sbjct: 916 TLLLPQADSVSLEAILENSPKAGKPLNRLLAKLVKAGIHPTDRTGITPVPDPSKHSENIK 975 Query: 325 PLKLSEMLLFREFM-RRPKRTNSLET-QGLVQVGYQGLEKIHKSPLHWQEKGLTLDD--W 380 ++ K ET + + K + + L++ W Sbjct: 976 TFTWQQLFDKDHHNKWCWKAFPYYETDLDIARQEISRDLKELAGESVFSKTYFALEEAGW 1035 Query: 381 RDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVRNPESKDPEDNQNRRWPQIRNGN 440 ++Y R+ D L + + + +P+ I N Sbjct: 1036 GYPCIPISENYSRKKLAIF--DALLRVLADAYRVDPSQYRNPDNPDTPWKTA-SAIPKRN 1092 Query: 441 VSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTF 500 + A + +G ++ L + K + + F Sbjct: 1093 RVYSFANSICHQSGGSVLDLLDE---------------FLLLLEKTGHQGGIIDIGKVHF 1137 Query: 501 SLIT---DAWICPVTNKI---LDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEI 554 L+ W C ++ L L I + + Q ++ +++ Sbjct: 1138 HLVEPTSSFWRCSKCGRVHLHLGAKICTRCHALLPEIQYGEAGVLQKQNYLGKRILYSSG 1197 Query: 555 WKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSEN-VWTDINDRVVEGGFYYRTAEHSAQQ 613 RS+E ++ +P R + + D +D + G + Sbjct: 1198 SHRMRSEELTG---------MTENPAARLRRFKGILIADDDDILPTGLKNFE-------- 1240 Query: 614 SSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQAT--------IPGPEW 665 E K ++VL+ +TTME+GVD + + + Sbjct: 1241 -----PDTELDRKARVIDVLSVTTTMEVGVDIGDLRAVFQANMPPQRFNYQQRVGRAGRR 1295 Query: 666 HLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFW 720 V+ + K+ +L F P K T + + +L + ++ W Sbjct: 1296 GQAFAFVLTACRSKSHDLFYFRHPEKITGDLPPPPF--LTTKLEMICQRLVRKIW 1348 >UniRef50_C9NK45 DEAD/DEAH box helicase domain protein n=1 Tax=Streptomyces flavogriseus ATCC 33331 RepID=C9NK45_9ACTO Length = 1862 Score = 169 bits (427), Expect = 5e-40, Method: Composition-based stats. Identities = 98/775 (12%), Positives = 202/775 (26%), Gaps = 152/775 (19%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHD 60 +Y C C + V E+ +C +C + L + + + + L D ++ Sbjct: 536 LYSRPTPRCSCDARVLELLYCQNCGDAFLGGYAPESAFRNTKERPFEAGLLADLPDLDSL 595 Query: 61 ATEEK-----------VEKENSFQPPLIIAAGETSEA------GYTLQRLDRQTRRIGVI 103 +++ + + + + + D +T + Sbjct: 596 PDAAALGPSAANYIVYWPRKDEPATDKLAWDSTSDKGVLSASFEFKRSKYDPRTGMLRNQ 655 Query: 104 NNDSI----------------PLIINDIEQVCSASGCG---------------YRGMSGK 132 +N + N CG + Sbjct: 656 SNHTGWSFHVSVPRSKRGNARLKADNLPATPTQCPSCGDDWELRQAGSEHLSLSDPRRMR 715 Query: 133 QPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQGTA 192 P R G + +L R+ + F+DSRQ A Sbjct: 716 TPVRSMRTGFEKVNQVLTTGILSLLP-------------------NRQAVVFSDSRQDAA 756 Query: 193 RMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARAKQAREQAEEYRS 252 +++ + + LR + + + + ADL ++ +++ + Sbjct: 757 KLSAGLGLRHYQDLLRLLL--------AEEVADQGDPVADLAAVSGFYRKSPDNP----V 804 Query: 253 WGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERADIRGPVLQYNH 312 +A + +A + K + + + E A + G + + Sbjct: 805 DRETAKAARDRLRARDRDTYDAWEKLQKPQAAASLDDLDDDLPDPAEEAALYGLLSRVPS 864 Query: 313 YLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGLEKIHKSPLHWQE 372 + +L ++ SL+ + S W E Sbjct: 865 LDS----HAAAVAERLVQL-----GANPGGPKASLQQTAYQKGSQPQ---PWTSLYRWPE 912 Query: 373 KGLTLDDWRDFL-----KVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVRNPESKDPED 427 G L + L +RES T+L L G F S + + Sbjct: 913 GGNGEVRDESSLVLSERQEQLRQDMRESLSTELLSGLFGSAGRDFESLGLGWLTVASDQA 972 Query: 428 N-QNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKP 486 + R S R+ + AG A L++ WA L Sbjct: 973 PLEAERASDAALARTSLRILGHMRRFAGL-RKPADNPPKK---LRDFWASAADYLGQDPD 1028 Query: 487 DGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVA 546 D + + W V ++ P H++ H + + Sbjct: 1029 DLQ-----------ATVELIWGTAVLKYVIQ----------PEHVALRHGSAVSWTCSTC 1067 Query: 547 QKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRT 606 + + + ++ + + D R + G F T Sbjct: 1068 NRRHLHPGVGICTKCRRPLPAESEQFESIDADYYAWMARKQ-----------FGHFRLNT 1116 Query: 607 AEHSAQQSSERLQSYEKMF-------KNGQL----NVLNCSTTMEMGVDTDRVMTLASRS 655 AE + Q Q+ + F K ++ +VL+ +TTME GVD + + + Sbjct: 1117 AELTGQTDRLDAQARQARFQGIFLDGKEHEIPDTLDVLSVTTTMEAGVDIGPLSAVLMAN 1176 Query: 656 QQAT--------IPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDI 702 T L + ++ + F P + TN + Sbjct: 1177 MPPTRFNYQQRVGRAGRRSSPVALALTVCRGRSHDEYYFQDPKRITNDATPRPYL 1231 >UniRef50_D0LMZ5 DEAD/DEAH box helicase domain protein n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LMZ5_HALO1 Length = 1861 Score = 168 bits (425), Expect = 8e-40, Method: Composition-based stats. Identities = 96/749 (12%), Positives = 189/749 (25%), Gaps = 120/749 (16%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEP---HLLARDKKGKLVQWENKGGDEFSLQDEVPV 57 +Y C CG + C C D + + + + G E Sbjct: 566 LYARGEDTCRCGRATAPLYLCRSCGADALRFRGGEDPETEALAPHAERGGEGEWMLYDRG 625 Query: 58 EHDATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQ 117 + + + + + + D T G + P+ + Sbjct: 626 RLEQSTDDDD------FSALARVTQMKRRPVVHGTYDPVTG--GFSRSGGYPVDVALAPA 677 Query: 118 VCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGR 177 + CG +G LG V + ++E Sbjct: 678 RNTCLVCGATAGAG-SILTPVALGTSAAVRVLAEGLVESLDIQHQTNPA--------HDG 728 Query: 178 GRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLA 237 RL+ F+DSRQ A A + R+R VV +L QT + L L Sbjct: 729 KERLLIFSDSRQDAAHQARFITYAGRYDRMRRRVVALLREASAPQTLS-----QILAGLL 783 Query: 238 ARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNEL 297 AR +AR+ R + Q +A E+A +A + +V Sbjct: 784 ARGVRARDNPHTQRYDDPGYLPRAVQQRARAWEEAPLLDDLAVSAGYRATIVNLGLVGLR 843 Query: 298 KERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGY 357 + V + L + L+ L E R + L Sbjct: 844 YDPLGRY--VRERGQALAARLGITTEQLAHLAR-CLLDEMRVRQAVSRELLRYHPANPHT 900 Query: 358 QGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFV 417 + + D LD+ V +L++ + Sbjct: 901 PEETPAAQWERRFAWPNGYPCDEDGEPLAWLDNDVVPEG-IRLNNAWRRPKA-------- 951 Query: 418 RNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQL 477 R ++ +L LL +G + +D++ +L + Sbjct: 952 -----------------GGRGPSLERKLKHLLRRMSGAEPEVDDLVDLVR-FLMTPGLIV 993 Query: 478 TGPLAVLKPDGNRFYLPKEHMTFSLITDA--WICPVTNKILDTAFKGLTPYLPTHISFEH 535 L + + + + + +L+ C V N Sbjct: 994 PVKLHGFRDERVLLQVNADAIELALVEADARRRCDVCN---------------------- 1031 Query: 536 LTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDIND 595 + A + + A + Sbjct: 1032 -VKMAWAEIGAPCPACHGVLVPWSENDVMANRY------------------------VRR 1066 Query: 596 RVVEGGFYYRTAEHSAQQSSERLQSYEKMFK----NGQLNVLNCSTTMEMGVDTDRVMTL 651 + G EH+AQ + + E+ FK +NVL+CS T+EMG+D + + Sbjct: 1067 ILEARGSALVAGEHTAQVTGSQRIELEEDFKAPPARSPVNVLSCSPTLEMGIDVGGLDAV 1126 Query: 652 ASRSQQATIPGPEWHL---------NDELVVRSLGYKTVELNEFILPAKATNAVERVKDI 702 R+ + +V+ + + + P + + Sbjct: 1127 VLRNVPPRPD--NYAQRGGRAGRRSRVGVVLSYARNRPHDAYFYDKPREMIAGEVPAPAV 1184 Query: 703 QIHKQLNGPLSQFGQRFWDVLFNDHEEAQ 731 + + + + + + Sbjct: 1185 GLSNR-DVVVRHLHAIAFSLAEPGLMGRM 1212 >UniRef50_Q2SFN9 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster n=2 Tax=Proteobacteria RepID=Q2SFN9_HAHCH Length = 1745 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 103/737 (13%), Positives = 198/737 (26%), Gaps = 114/737 (15%) Query: 16 YEVAFCNDCNEPHLLA-RDKKGKLVQWENKGGDEFSLQDEVPVEHDATEEKVEKENSFQP 74 Y + FC C + + + + + +G D +E+ F Sbjct: 454 YTLYFCRQCGQDYHPVCYENESGEGALKPRGID-----------DKNNDEESSDWGYF-- 500 Query: 75 PLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCSASGCGYRGMSGKQP 134 LD Q R D + E YR S + Sbjct: 501 -----------------MLDPQRRW------DDGNYESSYPEHWLEEKNGDYRLRSSYKK 537 Query: 135 FRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQGTARM 194 F+ E +G +PG R + +G +R Sbjct: 538 FKPT----------------ETFVKPDGTIDIQGERGWFIPGSFRFCLNCGFVHRGKSRE 581 Query: 195 AVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARAKQAREQAEEYRSWG 254 A R+ + R S +L+ D K Q ++ Sbjct: 582 ASRLTSLSGEG--RSSATTVLTISALRYLLERDTELKDDAK-KLLGFTDNRQDASLQAGH 638 Query: 255 MPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERADIRGPVLQYNHYL 314 D ++ ++ L A G ++L + + +R + R L Sbjct: 639 YNDFIQILLLRSSLLAAVKSAPNGYLTDSLLSQAVFQSLGF---DRVEERPQYLANPSVD 695 Query: 315 KPEVFNENGGPLKLSEMLLFREFMRRPK-RTNSLETQGLVQVGYQGLEKIHKSPLHWQE- 372 P + + L+ + R + +LE GL+++ Y+GL + + W+ Sbjct: 696 GPGLRKAEEALRNVLSYRLYFDLRRGWRFNNPNLEQLGLLKIEYEGLADLSQDQRKWENL 755 Query: 373 -----KGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVRNPESKDPED 427 + ++++ LK LD +R + SRF + + Sbjct: 756 KFPELQNVSVEFRFKALKAVLD-TMRRGLCIK----------SRFLDAYQQEQFKSQSYA 804 Query: 428 NQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPD 487 + W + +L T + N + + L L Sbjct: 805 HLIEPWAFTEEEQLQPSCTMIL-------TSKPKGRNSYNLVTASSRSSLGQTLKRSNVW 857 Query: 488 GNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQ 547 G+ L +I D + L L + L + Q Sbjct: 858 GDDLSLLP------------------RINDANYPDLILSLIGVLQSYGLVEEVNEERGIQ 899 Query: 548 KVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTA 607 + + + + S + L + F Sbjct: 900 GYQLVGEFIQWMPSTGVSST-DPTTPYSSENEYFKNLYQN--IAEFLVAGNRTFFELEAR 956 Query: 608 EHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIP------ 661 EH+AQ S ++ + EK F+ L L CS TME+GVD + ++ R+ T Sbjct: 957 EHTAQVSIDKREEREKQFREATLKTLFCSPTMELGVDIASLNSVYLRNVPPTPANYAQRS 1016 Query: 662 --GPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRF 719 ++ + F PA+ + + + + + S + Sbjct: 1017 GRAGRSGQPALVITYCAALSPHDQYFFSDPARMVHGHVSPPTLDLANE-DLIASHLHAIW 1075 Query: 720 WDVLFNDHEEAQSLMNN 736 + +LM + Sbjct: 1076 LSETKQALPKTVNLMLD 1092 >UniRef50_A1SC23 DEAD/DEAH box helicase domain protein n=3 Tax=Actinomycetales RepID=A1SC23_NOCSJ Length = 1741 Score = 165 bits (417), Expect = 7e-39, Method: Composition-based stats. Identities = 100/839 (11%), Positives = 200/839 (23%), Gaps = 137/839 (16%) Query: 15 VYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHDATEEKVEKENSFQP 74 + + FC +C + +L+ D S + + V Sbjct: 460 LLPLGFCRECGQEYLVVAKVG----------RDGGSAFVSRRDVDASGGDSVTGYLYVSS 509 Query: 75 PLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCSASGCGYRGMSGKQP 134 L E RL + N I++ + +S Sbjct: 510 DL-----PWPEDPLAAGRLPESW--LVTDPNTDRVEILDSKRKYLP----TKVFVSPTGS 558 Query: 135 FRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQGTARM 194 G P + V T +C +++ R Sbjct: 559 IDETRAGLPAWF---VSTPFAFCMRCG--------------------VSYEQVRGNDFGK 595 Query: 195 AVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARAKQAREQAEEYRSWG 254 + E R S + +LS P Q ++ Sbjct: 596 LATLDAEG-----RSSAMTLLSASIVRSLRGVPETELPPSARKLLTFVDNRQDASLQAGH 650 Query: 255 MPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERADIRGPVLQYNHYL 314 D +++Q +A A G L T+ + Sbjct: 651 FNDFVQVAQLRAALYAALQAAGADGLTHEALADAV-TDALGLTMRDFAQSPDAKFGARKD 709 Query: 315 KPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGLEKIHKSPLHWQE-- 372 ++ + R N LE GLV+V Y+ L ++ W Sbjct: 710 AERALRSVVEYQLYVDL----QRGWRVTMPN-LEQTGLVKVAYRDLPELAADEDSWAGTY 764 Query: 373 --KGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKF-VRNPESKDPEDNQ 429 ++ + ++ LD R + + R ++ + P + ++ Sbjct: 765 LLNKISAAQREELGRILLDELRRVRAIEVDCLTEEGFDRLRRLARSHLIEPWTLGEDERV 824 Query: 430 NRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGN 489 I + LL + +L+ A L G + + Sbjct: 825 VEAGVAIPRPARAGGRRALLAVS---------GRGAFGKYLRRDAAGLPGEVRTEDSE-- 873 Query: 490 RFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKV 549 +++ F+ LT + L++ ++ + Sbjct: 874 ------------------------RVIQDLFRVLT---------DAGLLSRTESADGPEY 900 Query: 550 TMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEH 609 + + R S + R + ++ + G EH Sbjct: 901 RINAGALRWVPGDGATGASDPLRKAFSGEE---TARVNPFFCELYRDLARGYAGMLAREH 957 Query: 610 SAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIP-------- 661 +AQ E+ F+ G L +L CS TME+GVD + + R+ T Sbjct: 958 TAQVPQSDRLEREEDFRTGDLPLLYCSPTMELGVDISDLNAVGLRNVPPTPANYAQRSGR 1017 Query: 662 GPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWD 721 ++ + F + + + + + Sbjct: 1018 AGRNGQQALVLTYCSTGNAHDNYWFRRSREMVSGSVIAPRLDLTNED-----------LI 1066 Query: 722 VLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSI--------LRPLKTKLTDGA 773 + + + + P +L LL + + + + Sbjct: 1067 RSHVHAIWLAETDESMKSSITDLVEAGGDTP-SLTLLPQLWDAVNKPNVTRHAQQTAERV 1125 Query: 774 EVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVELTVFDSPRDIPHHR 832 L + + W + D A AL R EL HR Sbjct: 1126 LAELRHTWALDGGDPSWWSDTW--VHDQVKHAAASLDDALQRWRELYRTALAEYHEQHR 1182 >UniRef50_C1ADN7 Putative uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ADN7_GEMAT Length = 2009 Score = 164 bits (415), Expect = 9e-39, Method: Composition-based stats. Identities = 108/767 (14%), Positives = 195/767 (25%), Gaps = 128/767 (16%) Query: 10 DCGSPVYEVAFCNDCNEPHLLARDKKGK----LVQWENKGG----------------DEF 49 D GS + E+ +C C E L R + L+ E DE+ Sbjct: 670 DPGSRLVELVYCESCGELFLGGRRGGRETAIELLPAEPNVDNLPESAGQDFFETLSADEY 729 Query: 50 SLQDEVPVEH-------DATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGV 102 ++ V D K P G R+ G Sbjct: 730 AVFWPVESWPGVLPSPRDDVHVGEWKRAYLDPISATIQFPRIGNGVPEGRITGYVWERGD 789 Query: 103 INNDS-IPLIINDIEQVCSASGCGY-----RGMSGKQPFRRALLGGPFYVTNIVPTVLEY 156 + CG P R G + + + Sbjct: 790 SQDRHKRRKESPGTAVPYECPACGSDYYWRNAPLRLSPIRNFRAGFAKTTQLLATELFDL 849 Query: 157 CQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILS 216 L R +L+ F+DSRQ A+ A+ +++ R VVE L Sbjct: 850 L---------------RLRQREPKLVAFSDSRQDAAKAALDIERRHHEDLRREVVVESLR 894 Query: 217 WHQRTQTSTAPNANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAA 276 + A P +L A A + A Sbjct: 895 AVAGARPDGTALQAEKERLTKEAQAHAVAGNLAAAFALKPRLDELETALANGADGADLPV 954 Query: 277 TGGKAATILVSRTWTEMVNELKERADIRGPVLQYNHYLKP----EVFNENGGPLKLSEML 332 +T R + R + V H P + G + + Sbjct: 955 AVVLESTRENPRFFGSRATREPLRPLLAEFVKLGIHPTDPTGTRRIKLPTGESVTWDSLF 1014 Query: 333 LFREFMRRPKRTNSLETQGLVQVGYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDH-- 390 + E + +++E +K++ + + L F K Sbjct: 1015 VIGEDGTPDWKDDAVEQ-----------DKLNAARQALVGEMQRLVTGVIFSKTYFALEE 1063 Query: 391 ----YVRESNFTQLDDELKNWIGSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLA 446 Y +D R + R +S+ + Q W + + R Sbjct: 1064 TGVAYPSVGPSVASEDRELADAFLRVFADSYRLVDSQYEDAGQKDPWRSALDIRTNQRAR 1123 Query: 447 KLLMLGAGFKTVNAATIDIINTWLKEAWA----QLTGPLAV-LKPDGNRFYLPKEHMTFS 501 +L VNA ++ + L +A LT L + L + + ++ Sbjct: 1124 RLASNIWAPDQVNA-GLERVLKLLAKAGHPEGLVLTSSLRIRLVEESDPYWRCGRCSRVH 1182 Query: 502 LITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQ 561 L +C + L G++ L TF + + Sbjct: 1183 LHRGVKVCTRCFQPLPEEQSGVSGDLHGESYLAKRIERDNATFRLRCEEL---------- 1232 Query: 562 EDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSY 621 + DP Q R +N+ D + RV + Sbjct: 1233 -----------TGQTEDPADRQRRFKNIVLDSDGRV-------------------DRRLR 1262 Query: 622 EKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQAT--------IPGPEWHLNDELVV 673 E +++L +TTME+G+D + + + + + Sbjct: 1263 EA---ARVIDMLAVTTTMEVGIDIGPLQAVFQANMPPQRFNYQQRVGRAGRRRQAFSMAL 1319 Query: 674 RSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFW 720 K+ +L+ F P T + K+ +F ++ W Sbjct: 1320 TVCRSKSHDLHYFWHPEAITGDPPPPPF--LTKRQPTAAKRFLRKAW 1364 >UniRef50_D2NP15 Transcription-repair coupling factor n=2 Tax=Rothia mucilaginosa RepID=D2NP15_9MICC Length = 1330 Score = 164 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 95/793 (11%), Positives = 191/793 (24%), Gaps = 71/793 (8%) Query: 60 DATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVC 119 DA E+ ++ P G + L RQ + + N Sbjct: 494 DAIEDGIDTYTVNATPATAFNGSVERMLSQVGDLIRQQWTVLALTNGRGSTDRLIDLF-- 551 Query: 120 SASGCGYRGMSGKQPFRRALLGGPFYVT------------NIVPTVLEYCQDFTSDEGKE 167 G RR L ++E + E + Sbjct: 552 ----HSGEGAPAVPAARRTSLEADPAGKLEHGIVEVCEAPASAGFLVEEAKLAVFTEAEL 607 Query: 168 GVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAP 227 + RG F R+ A + + R + + R +P Sbjct: 608 LGRRGTYAPRGAAGQKFKTRRRRNAVDPLALNPGDYVVHERHGIGRFVEMTSRPVAGASP 667 Query: 228 NANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVS 287 + + + + + G PD+ + Q + + + Sbjct: 668 -----VNGVQPMKEYLVIEYAPAKRGGAPDRLFVPSDQLDLISNYVGGENPSLSKMGGSD 722 Query: 288 RTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSL 347 K +I +++ + + L E + + L Sbjct: 723 WA-KTKSRARKAVKEIAADLVKLYSARQASRGHAFAADTPWQREL--EESFPYNETPDQL 779 Query: 348 ETQGLVQVGYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNW 407 V+ + + + G T R K D Sbjct: 780 TAIHEVKEDMEKEIPMDRLISGDVGFGKTEVAVRAAFKAVQD---------------GKQ 824 Query: 408 IGSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIIN 467 + + + + + + +IR T I Sbjct: 825 VAVLVPTTLLAQQHYETFSERFSGFPVKIR--------------VLSRFQKAKETRQITE 870 Query: 468 TWLKEAWAQLTGPLAVLKPDGNRFYLPK---EHMTFSLITDAWICPVTNKILDTAFKGLT 524 A + G +L L + + +D T Sbjct: 871 EIASGAVDVVIGTHRILSDSVVFKDLGLVIIDEEQRFGVEHKEKLKQMRTNVDVLAMSAT 930 Query: 525 PYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQL 584 P +P + + + T + + D A R+ + + Sbjct: 931 P-IPRTLEMSLTGIRETSTLATAPEERHPVLTFVGPRTDSQITAAIRREIMREGQVFFVH 989 Query: 585 RSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVD 644 D+ + + R A + S RL+ F + +VL C+T +E G+D Sbjct: 990 NRVADIDDVAAEIGKLVPEARIATAHGRMSESRLEQIIVDFWERRFDVLVCTTIVETGLD 1049 Query: 645 TDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQI 704 TL Q H V R + A ER+K + Sbjct: 1050 ISNANTLIVDHAQNYGLSQL-HQLRGRVGRGRERAYAYFLYPVDKTLGEIAHERLKAVAT 1108 Query: 705 HKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRP 764 H +L + D+ + I GV + D YL+ L+G + Sbjct: 1109 HNELG---AGLQLAMKDLEIRGAGNLLGGEQSGHIAGVGF-DLYLR------LVGEAVAN 1158 Query: 765 LKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVELTVFDS 824 + + + T L + P + + + ++ A + + D Sbjct: 1159 YRGEKEEREVETKIDLPVNAHIPHTYIDSERLRLQAYRQIAAADTEEKIA-EAREELVDR 1217 Query: 825 PRDIPHHRKLTVT 837 ++P + + Sbjct: 1218 YGELPDAVENLLA 1230 >UniRef50_Q2GBH3 DEAD/DEAH box helicase-like protein n=1 Tax=Novosphingobium aromaticivorans DSM 12444 RepID=Q2GBH3_NOVAD Length = 1704 Score = 162 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 91/743 (12%), Positives = 196/743 (26%), Gaps = 156/743 (20%) Query: 13 SPVYEVAFCNDCNE-PHLLARDKKGKLV-------QWENKGGDEFSLQDEVPVEHDATEE 64 + +Y V FC DC + H ++ D G ++ + + VP Sbjct: 443 ARLYPVYFCRDCGQEVHSVSIDNWGSVIARPIDVAPRPDGTDGDIEHGFLVPDSSGDLNF 502 Query: 65 KVEKENSFQPPLIIAA-GETSEAGYTLQRLDRQTRRIGVI--NNDSIPLIINDIEQVCSA 121 + E+ +A G+ + D + +G ++ L Q Sbjct: 503 AGDVEDYPDSWQETSATGQLRLKNSHRGKHDGRRMYLGRDGRHDPEGLLCWFFPGQFRFC 562 Query: 122 SGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRL 181 C + + + L G + T++ + + V R+L Sbjct: 563 PHCKSQPAPQARDINK-LAGLSAEGRSSATTLITTAALDWMERAGQPVEIHR-----RKL 616 Query: 182 ITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARAK 241 + FTD+RQ A + + LRG++++ + S NA + L Sbjct: 617 LGFTDNRQDAALQSGHFNDFIFVTLLRGAMLQAVRSAGEDGLSHEEFGNALRKALGFDPD 676 Query: 242 QAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERA 301 + E + + +A+ +L R W ++ Sbjct: 677 LRERRTEWMLDPEPVSFSAIDEAKKS-------------INRVLAHRLWNDL-------- 715 Query: 302 DIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGLE 361 + + P +L+ L+++ Y G+ Sbjct: 716 ------RRGWRFTNP-----------------------------NLDQLDLIKIVYPGIR 740 Query: 362 KIHKSPL-----------HWQEKGLTL-----DDWRDFLKVTLDHYVRESNFTQLDD-EL 404 + +E+G ++ D R+ + L ++R+ +D + Sbjct: 741 MLAGDQATCSGAHRERMSETEERGFSILSQVPADKREKMFRQLFDHMRQGLAIAVDALDP 800 Query: 405 KNWIGSRFSSK-FVRNPESKDPED-----NQNRRWPQIRNGNVSHRLAKLLMLG------ 452 S+ F+++P + E+ + G+ + R+ ++ G Sbjct: 801 NELEAVSIKSRQFLKDPWAISQEEQNHDLSAQTALVVGTQGSKNDRIVRVSARGGLARAI 860 Query: 453 -AGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPV 511 A + A + + + A A+ + L + Sbjct: 861 VAEVGDLPLADREPLIEAMLLAAARHQMAREFAAGPLLGWRLAPGALRIVPGDGRPKKGQ 920 Query: 512 TNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKA 571 N+ + + L + ++E A+ + Sbjct: 921 DNRFFAELYSDVAVRLAAPGG---------------------LPLAFEAREHTAQVDSLL 959 Query: 572 RDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLN 631 R+ +D AE K L Sbjct: 960 REMRECRFRFGN-------SDKQRMAEIANDAKVIAE-----------------KRDFLP 995 Query: 632 VLNCSTTMEMGVDTDRVMTLASRSQQATIP--------GPEWHLNDELVVRSLGYKTVEL 683 +L CS TME+GVD ++ + R+ T +V + Sbjct: 996 LLYCSPTMELGVDISQLNVVYLRNAPPTPANYAQRAGRAGRSGQAALVVTYCAAQSPHDQ 1055 Query: 684 NEFILPAKATNAVERVKDIQIHK 706 F + + I + Sbjct: 1056 YYFERRTDLVAGIVKAPAIDLVN 1078 >UniRef50_Q0YQW0 Helicase-like:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase-like n=2 Tax=Bacteroidetes/Chlorobi group RepID=Q0YQW0_9CHLB Length = 1757 Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 82/713 (11%), Positives = 189/713 (26%), Gaps = 104/713 (14%) Query: 14 PVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHD---ATEEKVEKEN 70 P++ V F + R + GK + E ++D++ + E + Sbjct: 474 PLFPVVFSRYSGYEFICVRKENGKFLPRNPDDLPERIVRDDLKGDKKTGLPKRELTGSDF 533 Query: 71 SFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCSASGCGYRGMS 130 S +I G+ + ++ L + + + + + G Sbjct: 534 SSGYLIIPENGDEIWSEKQIELLPESWFNVNKSGSSLHNYYEHQLPRKVFFDAEGTFSSE 593 Query: 131 GKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQG 190 P + + V + + + + G S +I+F+ Sbjct: 594 DTFPLCGWYVPARLLIDPTSGVVFDAKTNENTKLMRIGNEGRSTATT---IISFS----- 645 Query: 191 TARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARAKQAREQAEEY 250 +++ L + E + Q Sbjct: 646 --------------------IIKALQEERVAA-----------ESQKLLSFTDNRQDASL 674 Query: 251 RSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERADIRGPVLQY 310 ++ D L A T + +E+ ++ ++ Sbjct: 675 QAGHFNDFM--------MLGMMRSTIYHALKAAPENRLTVDTIGDEVFKKLNLPEDEYAR 726 Query: 311 NHYLKPEVFNENGGPLKLSEMLLFR--EFMRRPKRTN--SLETQGLVQVGYQGLEKIHKS 366 P + + + LL R ++R R N +LE L+ +GY+ L++ + Sbjct: 727 IPSTDPGWPDPENER-AIKDYLLIRILYDLKRGWRYNTPNLEQCALLNIGYRRLQEFSEQ 785 Query: 367 PLHWQE----KGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVRNPES 422 ++ G + + L L+ + R S + + + K + E Sbjct: 786 NRFFETIPFFDGFSAAERYSVLLQVLNFF-RTSYAFEYY---------KLTDKRIETEER 835 Query: 423 KDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLA 482 + ++N+ W ++ + L + + + T + Sbjct: 836 LKLKLDENKLWSLEQDEKIDTPYILLPR-----------------SVGETNYRMYTASVG 878 Query: 483 VLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYD 542 G + + + + I +G + E + + D Sbjct: 879 PQSNLGKYIRRLSTRKSIGSLHGSELSDAIEAICLMLERG------NFLRSEKVHGTKGD 932 Query: 543 TFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGF 602 + W+L Q+ + + + D + G Sbjct: 933 CVGFRLRIDSIYWELGNGQDTLPDEVRIQSYNGVVQQKPNDFFKKFYQQDFSS----FGR 988 Query: 603 YYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIP- 661 EH+ Q S E F+ G++ L CS TME+G+D + + R+ Sbjct: 989 TLTGREHTGQLSHTDRIERENGFRKGEIAALFCSPTMELGIDIRELNVVHMRNVPPNPAN 1048 Query: 662 -------GPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQ 707 + + N F K + +I + + Sbjct: 1049 YAQRSGRAGRSGQAALIFTYCSNGSPHDRNYFKESKKMVSGAVVPPNIDLTNE 1101 >UniRef50_A3EKW8 Copper-binding protein n=1 Tax=Vibrio cholerae V51 RepID=A3EKW8_VIBCH Length = 429 Score = 160 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 52/269 (19%), Positives = 100/269 (37%), Gaps = 34/269 (12%) Query: 649 MTLASRSQQATIPGPEWH--LNDELVVRSLG---YKTVELNEFILPAKATNAVERVKDIQ 703 + S +W ND + K + L + + +K + Sbjct: 180 NGVLLASVVDDTKAYQWGYFSNDTDTLICGTDSFIKPTLFDSTRLNFEGGS----LKKVV 235 Query: 704 IHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILR 763 +H++LNG + FG +FW +F E +LM + ++ Y+DRYL P+ L+L S L+ Sbjct: 236 VHEELNGAVKDFGFKFWSYVFKHSPELMALMKSQQLQSATYSDRYLAAPLPLSLCFSALK 295 Query: 764 PLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGR------PV 817 L + +P +F D++ + R Sbjct: 296 FLGEHYKGCTTQVVTGELHRSAKPMT----------VQDNFEDEYSRDKVFRLIADATEA 345 Query: 818 ELTVFDSPR-DIPHHRKLTVTFEDGQVLKIRFDQGMGYWRINFSSQWHYFDFRDDVSFQL 876 ++ P+ ++PH R L + F+ G + + DQG GYW + + + + Sbjct: 346 NMSFRSRPKYELPHARVLELVFDSGTKVTLWLDQGFGYWYADKYLP------ENQLERDV 399 Query: 877 V--KMAQACKEGNVANSEESWATDVLVEV 903 ++A G+ ++TD+ V + Sbjct: 400 SEEELADIISAGHSIIRSGKFSTDIFVSL 428 >UniRef50_A0L7C1 DEAD/DEAH box helicase domain protein n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L7C1_MAGSM Length = 2099 Score = 158 bits (398), Expect = 9e-37, Method: Composition-based stats. Identities = 89/839 (10%), Positives = 194/839 (23%), Gaps = 136/839 (16%) Query: 16 YEVAFCNDCNEP-HLLARDKKGKLVQWENKGG------DEFSLQDEVPVEHDATEEKVEK 68 + C +C + K + V+ + + + P ++ Sbjct: 474 LPIVHCRECGSVGWSGLKGKNSEKVETALRDFYIGFFNGDQRVTFLFPEGNNGEAATSAG 533 Query: 69 ENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCSASGCGYRG 128 S P + G + + + V NN++ CG Sbjct: 534 YYSHLCPNCMTMNPAQRKGDCSNCGEDKLVTVLVPNNEARRNDRIISTHH--CPYCGGHN 591 Query: 129 MSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSR 188 + ++ + S ++L+TF+DS Sbjct: 592 S-----LTLVGSQAASLTSVLIAQLF-----------------ASSFNDDKKLLTFSDSV 629 Query: 189 QGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARAKQAREQAE 248 Q A A + R ++ Q Q + +L + A+ + Sbjct: 630 QDAAHRAGFFAARTWKFNFRTAL------CQFIQHAGQGLTLKELPNAFIKHWSAQMDDK 683 Query: 249 EYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERADIRGPVL 308 ++ + + + + W E+ +EL A I + Sbjct: 684 QFIATFIAPNMGWFADYDALQKSGKLPVGSRLKHEVERRIDW-EVTSELAFSARIGRTLE 742 Query: 309 QYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGLEKIHKSPL 368 + + + LE ++G + Sbjct: 743 KTLSATAHLNPDLLEQAI-----------------QALLEPL-QNEIGALRELEADTLRR 784 Query: 369 HWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVRNPESKDPEDN 428 L L+ Y+ L + +W+ F + Sbjct: 785 FLMGLVTHLRHQGAVSHTALETYIENQGREYLLKRI-HWM-PNFGPFTRAPTFLTSRKMG 842 Query: 429 QNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDG 488 Q P G+ G N I+ + L + + Sbjct: 843 QRFDIPVAAQGHKRTWYQAWAERMLG--QQNLLVSSEIDRFYDILLKGLVDAGILDQTVV 900 Query: 489 NR---FYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFV 545 + + E + S ++C +F+ A +D + Sbjct: 901 QGIKVWGIKPEALLVSHELQEFLCEACG---------------NTTTFDQAEAAAWDGTL 945 Query: 546 AQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYR 605 + +++ + DY L + D Sbjct: 946 CLRSNCQGVYRPVPPRRDYYGLLYASGDIKR---------------------------IF 978 Query: 606 TAEHSAQQSSERLQSYEKMFKNGQ-------LNVLNCSTTMEMGVDTDRVMTLASRSQQA 658 AEH+ + + E+ FK + N+L+C+ T+EMG+D + + S Sbjct: 979 AAEHTGLLKRDDREELERQFKAAEADRQPWHPNLLSCTPTLEMGIDIGDLSSAILCSVPP 1038 Query: 659 TIPGPEWHLNDELVVRS---------LGYKTVELNEFILPAKATNAVERVKDIQIHKQLN 709 + R + +L F P + ++ Sbjct: 1039 --AQANYLQRIGRAGRRDGNALNVTIANGRPHDLYFFADPRSMLAGHVDPPGVFLNASAV 1096 Query: 710 GPLSQFGQRFWDVLFNDHEE---------AQSLMNNTRITGVHYTDRYLQNPVALALLGS 760 F + + E ++ + + LL + Sbjct: 1097 LERQFTAFCFDRWVSSGIAESDFPRQLRSVLGNLDKVSPKKFPHNLMRFIDNHQTKLLAT 1156 Query: 761 ILRPLKTKLTDGAEVTLDTLFKDKDRPGN----RPFHDWMSIADFQDFADQWFAAALGR 815 + L D ++ + + D R H +D + R Sbjct: 1157 FMGLFTGSLDDESKAHITNFVQGDDDTHGSLTWRITHGLQDQRKQRDSLQRKVRLLKDR 1215 >UniRef50_A4XIS4 Transcription-repair coupling factor n=2 Tax=Clostridia RepID=A4XIS4_CALS8 Length = 1143 Score = 157 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 55/367 (14%), Positives = 112/367 (30%), Gaps = 14/367 (3%) Query: 449 LMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPD---GNRFYLPKEHMTFSLITD 505 + + + K+ + I+ + G +L D + L + + Sbjct: 685 IEVLSRLKSESQQKK-ILKALKDGTIDIIIGTHRLLSNDVKFKDLGLLIIDEEHKFGVEH 743 Query: 506 AWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYA 565 + +D TP +P ++ L + + + Sbjct: 744 KEKIKKLKENVDVLTLTATP-IPRTLNMALLGIRDLSIIEDPPEDRFPVQTFVMEYNEKV 802 Query: 566 EGLAKARDWVSHDPLIAQLRSENVWTDINDRV-VEGGFYYRTAEHSAQQSSERLQSYEKM 624 A ++ + ++ +R+ G + A Q +L+ Sbjct: 803 IKEAILKEVSRGGQVFYLYNRVKDIEEVVNRLQALLGEDIKIAYAHGQMDERQLEEVLID 862 Query: 625 FKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELN 684 F NG+ +VL C+T +E GVD V TL + L V RS Sbjct: 863 FINGKYDVLVCTTIIESGVDMPNVNTLIVEDADRLGLAQLYQLR-GRVGRSNKLAYAYFT 921 Query: 685 EFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHY 744 + A +R+ I+ +L S F D+ + + I V Y Sbjct: 922 FRKDKVLSEEAAKRLSAIKEFTELG---SGFKIAMRDLEIRGAGSIVGKLQHGHINAVGY 978 Query: 745 TDRYLQ--NPVALALLG-SILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADF 801 D Y++ + L G I ++ ++ + + + D D+ + SI Sbjct: 979 -DMYIRLLSEEIRRLKGEEIQPEIEPQIDIRVNAYISSEYIDDDKERINMYKKISSIDTK 1037 Query: 802 QDFADQW 808 +D + + Sbjct: 1038 EDVQEIY 1044 >UniRef50_C2G1Z0 DEAD/DEAH box helicase domain protein (Fragment) n=2 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2G1Z0_9SPHI Length = 964 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 94/901 (10%), Positives = 241/901 (26%), Gaps = 179/901 (19%) Query: 1 MYVNQRQNCDCGSPVYEVAFCNDCNEPHLLARD---KKG--KLVQWEN------------ 43 +Y N R N + G+ + E+ +C++C G +L+ Sbjct: 22 LYSNTRINSENGNRILELLYCDNCGTTLFGGSRLVTGNGAFELLPISPNIEGIPEKTPAK 81 Query: 44 ----KGGDEFSLQD------EVPVEHDATEEKVEKENSFQPPLIIAAGETSEAGYTLQRL 93 + E+++ + + + + E + +L + Sbjct: 82 LVEKRSYQEYAVFWACGNQEFIQHDAEPGVPQNYWRQPTLNGFNQGDFEANWIPASLNCI 141 Query: 94 DRQ---------------------------TRRIGVINNDSIPLIIN---DIEQVCSASG 123 R I + + + I + VC G Sbjct: 142 SGDIDNSHNKADEKPERWIKGYYFIITNNSNRDIALPDANGDISTIETHKALPSVCPGCG 201 Query: 124 CGYRGMSG------KQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGR 177 ++ R G ++ + Sbjct: 202 VNHQKRRQDWNKSKTSTIRGFRTGFAKTTQMFAKELMYQLPSNEEE-------------- 247 Query: 178 GRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQ----TSTAPNANADL 233 R+L+ F+DSR+ A++A +++ +R +V L + + A Sbjct: 248 -RKLVVFSDSREDAAQVANGIERNHFTDLMREILVNELHSSLMLRFQILCAFDNGDTAKQ 306 Query: 234 EKLAARAKQAREQAE------EYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVS 287 E++ +++ ++ E Y + +A+A+ E I S Sbjct: 307 EEMKQQSQTTFDEIEYLVDNSSYNGSNTNKLREKQEAEAKLNEVRLLTLNVRSLVDITNS 366 Query: 288 RTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSL 347 +V + + + + + N +++ F F S Sbjct: 367 INLAPLVKRF-----VELGINPGGNDISLQTRELNNNFEPWFKLVDFTNFQWANGADQSY 421 Query: 348 ETQGLVQVGYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNW 407 L + + GL + L + + L ++ + + V + + Sbjct: 422 -INDLKEGSFDGLASMFFGSLFYSFESSAL----GYVCINPELEVVADQARVVALAKDEF 476 Query: 408 IGSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIIN 467 + S+ + + K + + + + ++ K + A + N Sbjct: 477 LQIINSTIRILGDKYKHNKVEDASPFNFTQYNDFPGQVKKYIRAVANRFSKQE------N 530 Query: 468 TWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYL 527 + L+ ++L+ D W N+ G+ + Sbjct: 531 EIGTAVFNTLSTS-SLLRGDTGIQIENLFIKVAQATDKVWTSTRGNRSHLHFSGGICTHS 589 Query: 528 PTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSE 587 T + +H + + E Sbjct: 590 VTALQT------------------------------------------THSKICDDIWKE 607 Query: 588 NVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKN-----------GQLNVLNCS 636 N + + E + Q ++ ++ F+N +++L+ + Sbjct: 608 NYLSYNAIKQQRPPIRLHCEELTGQ--TDDQFERQRHFRNIILPDEGNRQVKAIDLLSVT 665 Query: 637 TTMEMGVDTDRVMTLASRSQQAT--------IPGPEWHLNDELVVRSLGYKTVELNEFIL 688 TT+E+GVD + + + +++ ++ + F Sbjct: 666 TTLEVGVDIGALQAVMLGNMPPQRFNYQQRVGRAGRRGQAYSVILTFCRGRSHDEFYFAN 725 Query: 689 PAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRY 748 P K T + + ++ + F +L + + IT + + Sbjct: 726 PQKITGDAPPTPFLTMGQE---------RIFKRLLAKEILRRAYVEKEIDITSDDKSSVH 776 Query: 749 LQ--NPVALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFAD 806 + + + A+ S + + + T+D L + + F +W+S ++ Sbjct: 777 GEFGSVDSWAIYKSEIANWINENKKAIKQTVDALLTPQLQNKRAEFINWVSDVTTENGLI 836 Query: 807 Q 807 + Sbjct: 837 E 837 >UniRef50_B1ITR7 Helicase superfamily 1 and 2 ATP-binding n=17 Tax=Enterobacteriaceae RepID=B1ITR7_ECOLC Length = 2113 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 99/747 (13%), Positives = 185/747 (24%), Gaps = 144/747 (19%) Query: 16 YEVAFCNDCNEPHLLAR--DKKGKLVQWENKGGDEFSLQDEVPVEHDATEEKVEKENSFQ 73 V C DC H + G+ VQ E D Q + + Sbjct: 494 LPVIHCRDC---HATGWASQRHGQSVQLET-DLDGIYRQFF-------EKGRSIVLAFPD 542 Query: 74 PPLIIAAGETSEAGYTLQRL----------DRQTRRIGVINNDSIPLIINDIEQVCSASG 123 +G + T +L T + V+ D + +++E Sbjct: 543 NNEKAVSGAHQKLCPTCLKLNRQSSVQCGHCGHTELLQVLIPDMLKERKDELEFANECPY 602 Query: 124 CGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLIT 183 C + R A L E+ ++LIT Sbjct: 603 CNSKQGISILGSRAASLSAVMIHQLYGSQFNEH----------------------KKLIT 640 Query: 184 FTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARAKQA 243 F+DS Q A A +RG + +L + +A ++ + ++ Sbjct: 641 FSDSVQDAAHRASFFTARTWPLMIRGQIASVLGEKETLPL------DAFAARVCQQTRER 694 Query: 244 REQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERADI 303 + + + + + A + + W E+ +E RA I Sbjct: 695 SPDDAHFAANFIAPNMQWLNDYQTLKNEGKLAENSDLPELVSLRLDW-EVYSEFTLRARI 753 Query: 304 RGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLET---QGLVQVGYQGL 360 + + + + + L E S+E L + YQ Sbjct: 754 GRTLEATGYAVAGVDKDRFNPAITALHQQLCEELGDEM-SGVSVEQVAHLALGVIWYQRQ 812 Query: 361 EKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVRNP 420 P + T +E + ++S N Sbjct: 813 AGAVMHPAFESYRRDG---------TTFMMTQKERTSRYMPSIGPKTRKPAYASFEKING 863 Query: 421 ESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGP 480 + N W H + + L G + A T L+ + L Sbjct: 864 FHRLIGAKSNPSW-------YQHWINRTLSNGNNLFISSVA-----ETVLRRLFTALKIA 911 Query: 481 LAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQ 540 V D GL P + Q Sbjct: 912 GVVKDFDTKGR---------------------------EAWGLVP----SALVVSRDVVQ 940 Query: 541 YDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVV-- 598 + ++V + W + LR E + ++++ Sbjct: 941 LNCSCCREVVRAPADQ----------------GWQWRNAPCLSLRCEGRYQEVDNMATWR 984 Query: 599 -EGGFYYRT--AEHSAQQSSERLQSYEKMFKNGQ----LNVLNCSTTMEMGVDTDRVMTL 651 E R AEH+ S E ++ EK F G +N+L+ + T+EMG+D + T+ Sbjct: 985 WENMDIARVQGAEHTGLLSREDREATEKSFYRGNQPWNINLLSATPTLEMGIDVGDLSTV 1044 Query: 652 ASRSQQATIPGPEWHLNDELVVR---------SLGYKTVELNEFILPAKATNAVERVKDI 702 S + R + F P + + + Sbjct: 1045 LLCSVPP--AQANYLQRIGRAGRKDGNALNITVAEGNPHDQFFFEEPLEMMQGQVQAPGV 1102 Query: 703 QIHKQLNGPLSQFGQRFWDVLFNDHEE 729 ++ + + E Sbjct: 1103 FLNATAILERQLAAFCMDNWVKTGVPE 1129 >UniRef50_Q1IY46 ATP-dependent RNA helicase, intein and Vcr-like endonuclease domain n=2 Tax=Deinococcus RepID=Q1IY46_DEIGD Length = 1711 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 100/707 (14%), Positives = 192/707 (27%), Gaps = 113/707 (15%) Query: 14 PVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHDATEEKVEKENSFQ 73 +Y + FC C + + Q + + G D ++ F Sbjct: 448 RLYPLEFCRSCGQEYYSV------RRQRQPETGQRVFAARSPFQRGDPDDDSETGYLYFP 501 Query: 74 PPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCSASGCGYRGMSGKQ 133 E R+ I + + + G G Q Sbjct: 502 VTPESNPWPDDEEALLD-RVPSTWLDIDDTKVKLKSDRRKQLPETLRVTPLGEIVNFGGQ 560 Query: 134 PFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQGTAR 193 + PF + +C + + +L GR T Sbjct: 561 RVQFVKDPFPFCL---------HCGVSYAAGTGKLTKLATLSAEGRSTAT---------- 601 Query: 194 MAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARAKQAREQAEEYRSW 253 +++ + S + AP A L Q ++ Sbjct: 602 ----------------TLLSMASVQGLRHSGLAPQAQKIL------TFTDNRQDASLQAG 639 Query: 254 GMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERADIRGPVLQYNHY 313 D +S ++ +A GG L R + + L + V Sbjct: 640 HFNDFVFVSTLRSGLHRALVEAGPGGIEHEDLTRRVYAALGLTL-DDFASDPTVRFREKD 698 Query: 314 LKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGLEKIHKSPLHWQE- 372 ++ + G S+ ++ + N LE GL+ GY L+++ + WQ+ Sbjct: 699 RTVKILQDLLGYYVWSD----QQAGWKLTMPN-LEQCGLLTFGYPYLDEVCAAEDLWQKT 753 Query: 373 ----KGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVRNPESKDPEDN 428 +G + R +V ++R + ++++ ++ + N ES Sbjct: 754 HPALRGAAPEQRRQVAEVLFG-WMRRQLAIKTPYLTRDFLNGLEANMGLLNVES------ 806 Query: 429 QNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDG 488 W AK++ LG+ K + ++ L P + G Sbjct: 807 ---MWALTTEELRMLATAKVVALGSRPKGRPQHEVAFLSG-QGSFGKFLCRPETLPTWSG 862 Query: 489 NRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQK 548 E M L L + + P LA + Sbjct: 863 KLKRADAEEMIADLFH----------ALSEFIEEIGPGYFQLKGTAITWLAGDGEHGYED 912 Query: 549 VTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAE 608 V + + + + E R+AE Sbjct: 913 VLRVLHTEAPPKP-------------------------NEFFRSLYRQPSERFRGLRSAE 947 Query: 609 HSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIP------- 661 H+AQ +E + E+ F++G L L CS TME+GVD + + R+ T Sbjct: 948 HTAQIKAEEREKREEAFRSGDLPALFCSPTMELGVDISDLNVVGMRNVPPTPANYAQRSG 1007 Query: 662 -GPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQ 707 ++ + + + F P K N V +++ + Sbjct: 1008 RAGRSGQPALVMTYATLGNSHDQYFFRHPEKMVNGVVTTPRLELASE 1054 >UniRef50_Q89AK2 Transcription-repair-coupling factor n=3 Tax=Gammaproteobacteria RepID=MFD_BUCBP Length = 697 Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 58/376 (15%), Positives = 117/376 (31%), Gaps = 19/376 (5%) Query: 516 LDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWV 575 +D TP +P ++ + + + R A R+ + Sbjct: 302 IDVLTLTATP-IPRTLNMAFVGIRDLSIIATPPKQRLIVKTFVREFSYTVIRKAILREIL 360 Query: 576 SHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNC 635 + + N + + Q S L+S F + + NVL C Sbjct: 361 RGGQVYYIYNNVNKIERKKIELKKLVPEANIRIGHGQLRSTDLESIMNDFYHKRFNVLVC 420 Query: 636 STTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNA 695 ST +E G+D V T+ + H V RS L L ++A Sbjct: 421 STIIETGIDIPNVNTIIIENANNFGLAQL-HQLRGRVGRSQHQAYAWLLVPSLKDIKSDA 479 Query: 696 VERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVAL 755 +R+ I + S F D+ E + IT + ++ + + Sbjct: 480 KKRIDAITSIESFG---SCFELANRDLEIRGIGEILGNNQSGHITKIGFS-------LYM 529 Query: 756 ALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFA---DQWFAAA 812 LL + +R +K ++T K + N ++ + + F Sbjct: 530 KLLMNAVRNIKNGYYKPLNDIINTYPKIELNVSNLLPDSYIKKVNHRLFFYNKIATSNNF 589 Query: 813 LGRP-VELTVFDSPRDIPHHRKLTVTFEDGQVLKIRFDQGMGYWRINFSSQWHYFDFRDD 871 L + LT+ + ++P+ + +++ + G+ + + + F F D Sbjct: 590 LDLEKIRLTLCKNFGNLPNSGDYLIKIAKIRLISKKI--GVKKIKSDVKGGYIEF-FEDS 646 Query: 872 VSFQLVKMAQACKEGN 887 + + KE N Sbjct: 647 KINIQNLLKEFKKEKN 662 >UniRef50_A5KKI8 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=A5KKI8_9FIRM Length = 1115 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 105/789 (13%), Positives = 216/789 (27%), Gaps = 81/789 (10%) Query: 144 FYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAE 203 F V ++ + + + L G R++ + SR R+A ++ Sbjct: 319 FKVRSVYTVQAKGVNPYNNSFELLTRDLKRLKRNGYRVVLLSGSRTRAKRLAEDLRDYDL 378 Query: 204 RSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQ 263 S + + + + + L +++ + + K + Sbjct: 379 SSFYSEDMQREVKPGEIMAAYGYASEGYEYPMLK---FVVISESDIFGRKKKKKKRKKYE 435 Query: 264 AQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENG 323 Q Q K +V V + E+ ++ V Y + E Sbjct: 436 GQR------IQDFAELKPGDYVVHENHGIGVYKGIEKIEVEKIVKDYMKIVYAE---GGV 486 Query: 324 GPLKLSEMLLFREFMRRPKRTNSLETQG-------------LVQVGYQGLEKIHKSPLHW 370 + +++M L +++ + L G VQ+ + L +++ Sbjct: 487 LYIPVAQMDLIQKYAGADAKKPRLNKLGTIQWGKTKSQVKKAVQIVAKDLVELYAVRQQS 546 Query: 371 QEKGLTLDD-WRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFV-RNPESKDPEDN 428 + D W+ + + ++D + + + + + E Sbjct: 547 EGFVYGPDTVWQKEFEEMFPFEETDDQLQAIEDTKHDMESKKIMDRLICGDVGYGKTEIA 606 Query: 429 QNRRWPQIRNGN--------------VSHRLAKLLMLG------AGFKTVNAATIDIINT 468 + ++ G + + L A I Sbjct: 607 IRAAFKAVQEGKQVVCLVPTTILAQQHYNTFVQRLKEFPVRIDLLCRFRSAAEQKKTIED 666 Query: 469 WLKEAWAQLTGPLAVLKPD---GNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTP 525 K L G VL D + L + +T + +D TP Sbjct: 667 TKKGFVDILVGTHRVLSKDVVFKDLGLLIIDEEQRFGVTHKEKIKKLKENIDVLTLTATP 726 Query: 526 YLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLR 585 +P + + + I D A R+ + Sbjct: 727 -IPRTLHMSLIGIRDMSVLEEAPNERMPIQTYVMEYNDEMVREAITRELARDGQVYYVYN 785 Query: 586 SENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDT 645 N D+ R+ A Q L+ F NG ++VL +T +E G+D Sbjct: 786 RVNDIADVAGRIQSLVPDANVAFAHGQMKERELEDIMYDFINGDIDVLVSTTIIETGLDI 845 Query: 646 DRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIH 705 T+ + + L V RS L A +R+ I+ Sbjct: 846 PNANTMIIQDADRFGLSQLYQLR-GRVGRSNRMAYAFLLYQRDKLLKEVAEKRLSAIREF 904 Query: 706 KQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPL 765 L S D+ + + V Y D Y +L +R L Sbjct: 905 TDLG---SGIKIAMRDLEIRGAGNLLGEAQSGHMEAVGY-DLY------CKMLNEAVRQL 954 Query: 766 KTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFAD---------------QWFA 810 K TL L D P +++ + ++ A F Sbjct: 955 KGGPEAETFTTLIDLNVDAYIPEYYIKNEYQKLDIYKRIAAIESEEELEDMTEELIDRFG 1014 Query: 811 AALGRPVELTVFDSPRDIPHHRKLTVTFEDGQVLKIRFDQGMGYWRINFSSQWHYFD-FR 869 + +L V S + + H +T + G+ ++ +I+ S + D ++ Sbjct: 1015 DIPKKVQQLLVIASLKSLAHSVYVTAIEQKGEEIRFTM---YEKAKIDPSGIPKFLDSYK 1071 Query: 870 DDVSFQLVK 878 +D+ F+ + Sbjct: 1072 NDLIFRAEE 1080 >UniRef50_Q3AFL2 Transcription-repair coupling factor n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AFL2_CARHZ Length = 1160 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 61/416 (14%), Positives = 121/416 (29%), Gaps = 30/416 (7%) Query: 451 LGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPK---EHMTFSLITDAW 507 +II + + G +L+ D + L + + Sbjct: 701 RLLSRFQTAREQKEIIKELKRGKVDIVIGTHRLLQDDVQFYDLGLMIVDEEQRFGVAQKE 760 Query: 508 ICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEG 567 + + +D TP +P + + + + ++ + Sbjct: 761 RLKILTETVDVLTLTATP-IPRTLHMALMGIRDLSVLNTPPENRFPVQTYVLEEDPFIIR 819 Query: 568 LAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKN 627 A R+ + + ++ V + A Q E+L+ F + Sbjct: 820 DAIRRELGRGGQVFFVHNRVSDIDEVAAWVQSLVPEAKVAVAHGQMKEEQLERVMLEFIS 879 Query: 628 GQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFI 687 G+ +VL +T +E G+D V TL ++ + L V RS L Sbjct: 880 GKYDVLVSTTIIETGIDLPNVNTLIIKNADRFGLAQLYQLR-GRVGRSNRIAYAYLMYEK 938 Query: 688 LPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDR 747 A +R+ I+ + S D+ + I V + D Sbjct: 939 DKVLREAAEKRLAAIKEFTEFG---SGLKLAMRDLEIRGAGNLLGPEQHGHIAAVGF-DM 994 Query: 748 YLQNPVALALLGSILRPLKTKLTD---------GAEVTLDTLFKDKDRPGNRPFHDWM-- 796 Y + LL + LK ++T + + ++ + Sbjct: 995 Y------MKLLQETVAELKGQVTSEEVEPQLELNLTAYIPESYIPDEKQKIEMYRRLSRT 1048 Query: 797 -SIADFQDFADQWFAAALGRPVELTVFDSPRDIP-HHRKLTVT--FEDGQVLKIRF 848 ++ D +D D+ P E+ I KL V F+ + LKI+F Sbjct: 1049 RNLEDLEDVVDELIDRFGEIPPEVENLIRLIKIKIVASKLKVKGIFQTDEELKIQF 1104 >UniRef50_B5CPD5 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=B5CPD5_9FIRM Length = 1117 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 95/720 (13%), Positives = 197/720 (27%), Gaps = 44/720 (6%) Query: 138 ALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQGTARMAVR 197 GG F V ++ + + L +G R+I + SR R+A Sbjct: 313 TRCGG-FKVRDVYSIQAAGVNPYNNSFEMLTQDLKKLKRQGYRVILVSGSRTRAKRLAED 371 Query: 198 MQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAA---RAKQAREQAEEYRSWG 254 ++ S +V + + + L + ++ R Sbjct: 372 LRDYDLSSFYSEDMVRTVRPGEIMVVYGCVAEGYEYPMLKFMVISESDIFGKRKKKRRRK 431 Query: 255 MPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERADIRGPVLQYNHYL 314 + + K+ + + G + + + V + + Y Sbjct: 432 VYEGQKIQEFAELKPGDYVVHENHGLGVYQGIEKVEVDKVTRDYMKISYADGGILYILAT 491 Query: 315 KPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGLEKIHKSPLHWQEKG 374 + ++ + G ++ + + + VQV Q L +++ + Sbjct: 492 QMDLIQKYAGAD--AKPPKLNKLGTPQWNKTKSQVKKAVQVIAQDLVELYAVRQQTEGFV 549 Query: 375 LTLDD-WRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFV-RNPESKDPEDNQNRR 432 + D W+ + E ++D K+ ++ + + + E Sbjct: 550 YSPDTVWQKEFEEMFPFEETEDQLRAIEDTKKDMESTKVMDRLICGDVGYGKTEVAIRAA 609 Query: 433 WPQIRNGNVSHRL--AKLLML------------------GAGFKTVNAATIDIINTWLKE 472 + +++G L +L A I K Sbjct: 610 FKAVQDGKQVVYLVPTTILAQQHYNTFIQRLKDFPVRIDLLCRFRTPAQQKKTIEDLKKG 669 Query: 473 AWAQLTGPLAVLKPD---GNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPT 529 + G VL D + L + +T + +D TP +P Sbjct: 670 LVDIVIGTHRVLSKDVTYKDLGLLIIDEEQRFGVTHKEKIKKMRENIDVLTLTATP-IPR 728 Query: 530 HISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENV 589 + + + + I D A R+ + Sbjct: 729 TLHMSLIGIRDMSVLEEAPMDRMPIQTYVMEFNDEMIREAIERELSRGGQVYYVYNRVED 788 Query: 590 WTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVM 649 D+ RV + + Q S L+ F NG+++VL +T +E G+D Sbjct: 789 IADVAGRVQKLVPGASVSFAHGQMSERELEDIMYDFINGEIDVLVSTTIIETGLDIANAN 848 Query: 650 TLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLN 709 T+ + + L V RS L A +R+ I+ L Sbjct: 849 TMIIQDADRFGLSQLYQLR-GRVGRSSRMAYAFLLYRRDKLLKEVAEKRLAAIREFTDLG 907 Query: 710 GPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKTKL 769 S D+ + + V Y D Y +L ++ LK + Sbjct: 908 ---SGIKIAMRDLEIRGAGNLLGEAQSGHMAAVGY-DLY------CKMLNEAVKELKGEK 957 Query: 770 TDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVELTVFDSPRDIP 829 + T L D P + +++ + ++ A + + D DIP Sbjct: 958 EEDQFTTTMDLNIDAFIPESYIKNEYQKLDIYKRIA-AITTEEEMDDMTEELIDRFGDIP 1016 >UniRef50_C0GU79 Helicase superfamily 1 and 2 ATP-binding n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GU79_9DELT Length = 2094 Score = 150 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 95/719 (13%), Positives = 189/719 (26%), Gaps = 123/719 (17%) Query: 16 YEVAFCNDCNEP-HLLARDKKGKLVQWENKGG--DEFSLQDEVPVEHDATEEKVEKENSF 72 + C +C + L G +Q + K D FS + + +E+ + + F Sbjct: 473 LPLLHCRECGQMGWLGRLPLHGAGLQSDLKAIYVDFFSKKPSQRLTSIFPQEQGSRSSFF 532 Query: 73 QPPLIIAAGETSEAGYTLQ---RLDRQTRRIGVINNDSIPLIINDIEQVCSASGCGYRGM 129 + G R QT I V+ +S CG Sbjct: 533 PGHSMQLCPWCLHLGNKSGDECRGCGQTGTIAVLVPESAVKH---------CPSCGAHNS 583 Query: 130 SGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQ 189 R A L + + + + I F+D+ Q Sbjct: 584 LTLLGSRAASLTSVMIGQFMSSS-YNFDP---------------------KCIAFSDNVQ 621 Query: 190 GTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARAKQAREQAEE 249 A A R R ++ + + + + Q+R AE Sbjct: 622 DAAHRAGFFGARTFRFTFRAALQQYVQDRAEGHSLQRISREM------PAYMQSRMDAEN 675 Query: 250 YRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERADIRGPVLQ 309 + + MP AE LE+ +G +++ R E V+E + I + + Sbjct: 676 FAATFMPSNMTWLHD-AEHLEKHDCLPSGSDLGSLIARRLRFETVSEYGFSSRIGRTLEK 734 Query: 310 YNHYLKPEVFNENGGPLKLSEMLLFREF----MRRPKRTNSLETQGLVQVGYQGLEKI-- 363 + G ++ +M+L E M + NS +T G + L Sbjct: 735 SGASVARPDPERMGLVIEELKMILQNEMEELRMPQGTAGNSGDTSGQ-SINNNALASFLM 793 Query: 364 HKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVRNPESK 423 + + G+ D +++K + K+W+ F K Sbjct: 794 GLTVQIKNQGGIFDPDLEEYVKNW-------GKEYYISQRRKHWM-PGFGPKTRTPGFVT 845 Query: 424 DPEDNQNRRWPQIR-NGNVSHRLAKLL-MLGAGFKTVNAATIDIINTWLKEAWAQLTGPL 481 R+PQI +G+ + + + + Sbjct: 846 TRAG--MDRFPQITHSGSRNSWYEWWAFNYFPNLAMRQPGLAQRFYNLVFASLNKHGLVQ 903 Query: 482 AVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQY 541 + + + L + + + + C + L A Sbjct: 904 DRFQDGHHIYGLQPDALQITNQVQQFRCSICGFSLSGAAAD------------------- 944 Query: 542 DTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGG 601 E+W +G+ + R + + + R Sbjct: 945 ----------HEVWSSMSCLRRGCQGIFDPAE-----------RGADYYGRLYIRG--RI 981 Query: 602 FYYRTAEHSAQQSSERLQSYEKMFKNGQ-------LNVLNCSTTMEMGVDTDRVMTLASR 654 EH+ + + E+ FK N+L+ + T+EMG+D + Sbjct: 982 NRVVAREHTGLLDRDTREELEQKFKTPDAQRKPWYPNLLSSTPTLEMGIDIGSLSATLQC 1041 Query: 655 SQQATIPGPEWHLNDELVVR---------SLGYKTVELNEFILPAKATNAVERVKDIQI 704 S + R + +L F P + + + + Sbjct: 1042 SVPPGQ--ANYVQRTGRSGRKDGNALNLTVAAGQAHDLYFFARPLEMISGYVHPPGVYL 1098 >UniRef50_Q2JKX2 ATP-dependent helicase, DEAD/DEAH box family n=6 Tax=Bacteria RepID=Q2JKX2_SYNJB Length = 1734 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 98/845 (11%), Positives = 208/845 (24%), Gaps = 158/845 (18%) Query: 16 YEVAFCNDCNEPHLLARDKKGKLVQ-WENKGGDEFSLQDEVPVEHDATEEKVEKENSFQP 74 + V FC C + + K + + +E Q + D + + E + Sbjct: 497 FPVKFCRHCGQDYYHVLRSKTHFLPYPLGEEVEEGEDQQAGYLSLDPIDNEWSPEQIPED 556 Query: 75 PLIIAAG-ETSEAGYTLQRLDRQ-TRRIGVINNDSIPLIINDIEQVCSASGCGYRGMSGK 132 + Q + + + + + CG + Sbjct: 557 WYTPENRLKPHWKKRVPQAVWVRPDGSFSEVPQAEAQKLWWQPQPFSLCLACGEYYSGRE 616 Query: 133 QPFRR----ALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSR 188 + F + + G T + ++L + + G +L+TFTD+R Sbjct: 617 REFAKLASLSSEGRSSATTILATSLLRHAAQTGAARG--------------KLLTFTDNR 662 Query: 189 QGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARAKQAREQAE 248 Q + A + LR S+ L ++ + + A A ++ + Sbjct: 663 QDASLQAGHFNDFVHVALLRASLYAAL--QEKKELDFSEVAPAVVQASGLSLADITQNP- 719 Query: 249 EYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERADIRGPVL 308 + W + R + + Sbjct: 720 -----------------------------DLDPDSPSAEEVWQTFSELTEYR--LYEDLR 748 Query: 309 QYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGLEKIHKSPL 368 + P +LE GL+++ Y+ L ++ + Sbjct: 749 RGWRVTHP-----------------------------NLEQVGLLKIEYRSLRELCQ--- 776 Query: 369 HWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVRNPESKDPEDN 428 L W F++ ++ R K I R + + E + Sbjct: 777 --GSALAPLHPW--FVQAEVEERERLLRAVLDQFRRKLAIDVRLLKAESQRTLRRRAEQH 832 Query: 429 QNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDG 488 N W + + + K + ++ + + +L L D Sbjct: 833 LNEFW-GLEEYDELRTATCFVRQSCDGKDITTFSLGPRSALGRFLAKRL--GLTRETYDE 889 Query: 489 NRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQK 548 L +++ L+ + + Sbjct: 890 LLGSLLSLLVSYDLLRR-----------------------HSENGQEAYQLNAGCLRWCL 926 Query: 549 VTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAE 608 S+ G + AR V+ + + G E Sbjct: 927 GNGSPPPDPLYSRRAEQSGYSSARRPVNL-----------FFQRLYQAGAAGLGSLEARE 975 Query: 609 HSAQQSSERLQSYEKMF-----KNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIP-- 661 H+AQ + + + +L L CS T+E+GVD + + R+ T Sbjct: 976 HTAQVVRPGEREQRERRFRGEDQARRLPYLVCSPTLELGVDIADLDLVHLRNVPPTPANY 1035 Query: 662 ------GPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQF 715 ++ + + + F + R + + + Sbjct: 1036 AQRSGRAGRQGQPGLIITYCGAFNSHDQYYFRRRPEMVAGRVRPPRLDLANE-------- 1087 Query: 716 GQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKTKLTDGAEV 775 + L I V DR + L + L+ + Sbjct: 1088 -SLLRAHIHAVWLAQVRLPLGNSIETVIDADR---EELPLRETVAQQIQLEESARQQVKE 1143 Query: 776 TLDTLFKDKDR---PGNRPFHDWMSIADFQDFADQWFAAALGRPVELTVFDSPRDIPHHR 832 + L + W+ + A Q F A R EL + + +R Sbjct: 1144 QVQKLLAADRQLLDKSGWFSERWL--QQVIEEAPQAFDRAFDRWRELYRAATQQLEAANR 1201 Query: 833 KLTVT 837 +L T Sbjct: 1202 QLQTT 1206 >UniRef50_C3Q570 Helicase n=1 Tax=Bacteroides sp. 9_1_42FAA RepID=C3Q570_9BACE Length = 1728 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 78/566 (13%), Positives = 156/566 (27%), Gaps = 63/566 (11%) Query: 260 KLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERADIRGPVLQY-NHYLKPEV 318 K+ A E + + L S + + + K R+ I V + + Sbjct: 619 KMRNANVEPADCKVMTFVDARQDAALQSGHFNDFIRIGKIRSAIWNAVKEADEPIGSDRI 678 Query: 319 FNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGLEKIHKSPLHWQEKGLTLD 378 L LS FR R +E +G + + +WQ L+ Sbjct: 679 ARLVFKYLHLSHNDFFRFPNWTGGRAKKVENVMERYLGTIIYDDLA---GNWQVNMPNLE 735 Query: 379 DWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVRNPESKDPEDNQNRRWPQIRN 438 + LK + G + PE D R+ Sbjct: 736 E-CALLK------------INYEYLHDEITGENGCDRLYDIPELDGLSDENKERFII--- 779 Query: 439 GNVSHRLAKLLMLGAGFKTVNAATIDI--INTWLKEAWAQLTGPLAVLKPDGNRFYLPKE 496 + + L + + +T AA + LK W L + F P+ Sbjct: 780 -QILDYMRHKLCIYSDDRTEEAAKDIEKQVRENLKSPW-TLDDNDRITASHALCFVKPQN 837 Query: 497 HMTFSLIT-DAWICPVTNKILDT-AFKGLTPYLP---THISFEHLTLAQYDTFVAQKVTM 551 + + + D G T + ++S+ A ++ + Sbjct: 838 KRKAFGKEVAGYRSKLAFFVRDFLNINGGTATIRNSEDYVSYMQSLFAALGNYIQENDGA 897 Query: 552 PEIWKLDRSQEDYAE---GLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAE 608 +++ E E R D ++ + + + + Sbjct: 898 YQLFYSSILWEKGDEKNVRTDLTRIRTIGDEIVYTPNK--YFQNFYKNIPLSNINLEAKD 955 Query: 609 HSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIP------- 661 H+ Q + + E+ F+NG+ VL CS TME+G+D + + R+ T Sbjct: 956 HTGQVPKDEREKREQQFRNGEFPVLYCSPTMELGIDIKDLSIVGMRNVPPTPANYTQRAG 1015 Query: 662 -GPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFW 720 + + E P K + + +++ + F Sbjct: 1016 RAGRSGQAALIYTYCRTRNSHENYYLRHPEKMVSGEVKAPRMELVNE-----ELFSTHLH 1070 Query: 721 DVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPL------KTKLTDGAE 774 + + Q ++N V Y+ N +AL ++ L K ++ + Sbjct: 1071 STILSICPIPQ--LSNGIADLVDYS-----NANNIALKPEVVHHLQLSKERKQEIKAIFK 1123 Query: 775 VTLDTLFKD---KDRPGNRPFHDWMS 797 + + WM Sbjct: 1124 QAISDYYLSSRIDKEMPYWFSDSWMD 1149 >UniRef50_A9KR33 Transcription-repair coupling factor n=11 Tax=Bacteria RepID=A9KR33_CLOPH Length = 1179 Score = 148 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 61/374 (16%), Positives = 108/374 (28%), Gaps = 17/374 (4%) Query: 460 AATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFS---LITDAWICPVTNKIL 516 A + K L G VL D L + +T + Sbjct: 716 AQQKKTLENLKKGQLDILIGTHRVLSKDIQFKNLGLLIIDEEQRFGVTHKEKIKQMKGDI 775 Query: 517 DTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVS 576 D TP +P + + + V I D A R+ Sbjct: 776 DVLTLTATP-IPRTLHMSLVGIRDMSVLEEPPVDRLPIQTFVLEHNDEIIREAINRELAR 834 Query: 577 HDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCS 636 + N +I + + A Q +L+ F NG+++VL + Sbjct: 835 GGQVYYVHNRVNGLDEITNTIARLVPDANVAFAHGQMHEHQLEKIMFEFINGEIDVLVST 894 Query: 637 TTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAV 696 T +E G+D V T+ + + L V RS L A Sbjct: 895 TIIETGLDISNVNTMIIDNADQLGLSQLYQLR-GRVGRSNRTSFAFLMYKRDKLLKEVAE 953 Query: 697 ERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALA 756 +R++ I+ +L S F D+ + + V Y D Y Sbjct: 954 KRLQAIKEFTELG---SGFKIAMRDLEIRGAGNLLGAQQSGHMEAVGY-DLY------CK 1003 Query: 757 LLGSILRPLKTKL-TDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGR 815 +L ++ LK ++ + T + D P ++ + ++ A Sbjct: 1004 MLNDAVKGLKGEISDEDTFDTSIDMDMDAFIPSTYIKNEMQKLDMYKRIAGIENEEEF-M 1062 Query: 816 PVELTVFDSPRDIP 829 ++ + D DIP Sbjct: 1063 DMQEEMLDRFGDIP 1076 >UniRef50_C8VVH8 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VVH8_DESAS Length = 2136 Score = 148 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 111/877 (12%), Positives = 221/877 (25%), Gaps = 144/877 (16%) Query: 13 SPVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHDATEEKVEKENSF 72 V C +C K + E V + Sbjct: 496 RRSLPVIHCREC---WATGWVSVKKSEGLYDSVALEDLKAFYVLFFAKHPDVA------- 545 Query: 73 QPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCSASGCGYRGMSGK 132 + + L + + D S + CG R + Sbjct: 546 ---YLFPVENEEQVQGQHYLLCSRCLTLS------------DPRFQESCAACGSREVIPV 590 Query: 133 QPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDS--------------LPGRG 178 F +L + E C S + +G S Sbjct: 591 --FMPNMLESSASGQVHIT---EDCPFCGSKKSLTILGYRSAGLSSVMISQVFASPHNDD 645 Query: 179 RRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAA 238 ++L+ F+DS Q A A R LR ++ + A Sbjct: 646 KKLLAFSDSVQDAAHRAGFFSARTYRFNLRTALQCFVQDGGSGLALDDFTGG------FA 699 Query: 239 RAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELK 298 Q R EE+ + +P E L A + W E+ +E Sbjct: 700 AYWQNRMTPEEFITTFLPPDKIWFNDYQEMLRTGRLKPGSTLLADVTKRLVW-EIHSEYG 758 Query: 299 ERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQ 358 A I + + + + G +K+ + + E + + ++T LV + Sbjct: 759 LNARIGRTLEKSGCSVLMPDSDRLAGVIKVIQERIAGEI-EALRSADMVKTTWLVAGLWL 817 Query: 359 GLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVR 418 L + +D W LD Y++ L W+ + + Sbjct: 818 RL-----------KNNGAIDQW------MLDSYIQNFGSPWHLGNLLKWLPTAGPGTRLP 860 Query: 419 NPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLT 478 S+ + R+ + + S + G + +I+ + A++ Sbjct: 861 AFFSETV--TRKSRFDTLHRSHGSTWYERWYDKCLG--STYVLYATLIDEVFRIVLAEMA 916 Query: 479 GPLAVLKPDGNR---FYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEH 535 +++ + + L H S C ++ A Sbjct: 917 AAGLLVQREVQGRKVWGLNPVHSLVSDQVAQLRCRECGHVMAVAL--------------- 961 Query: 536 LTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDIND 595 +P + ++ A + R+ L S + Sbjct: 962 -------------AFLPNMEGSPCTRAGCAGEYSYDRELSGKVNYYGHLYSSGQVQRVF- 1007 Query: 596 RVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQL-------NVLNCSTTMEMGVDTDRV 648 EH+ E + E+ FK+G N+L+C+ T+EMG+D + Sbjct: 1008 ----------AKEHTGLLKREDREKVEQEFKSGITTRKPWFSNLLSCTPTLEMGIDIGDL 1057 Query: 649 MTLASRSQQATIPGPEWHLNDELVVRS---------LGYKTVELNEFILPAKATNAVERV 699 +L S ++ R K +L+ F+ P + Sbjct: 1058 SSLILCSVPPGQ--AQYTQRIGRAGRRDGNAFHATVANAKPHDLHFFLEPQEMMQGGVPT 1115 Query: 700 KDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGV-HYTDRYLQNPV----- 753 I ++ + ++ DR + PV Sbjct: 1116 PGIYLNAPAVLERQLTAYCLDQWVNTGIPVTAIPRKLGQVLAAWKSKDRSTRFPVNFLTY 1175 Query: 754 ----ALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWF 809 + ALL + L L + + + + + + D Sbjct: 1176 VHENSAALLAGFIALFDDVLELSTVDRLRVFLQGEAGDSDLRYRVAERLEEILKELDVLN 1235 Query: 810 AAALGRPVELTV-FDSPRDIPHHRKLTVTFEDGQVLK 845 ++ PRD+ +L + + L+ Sbjct: 1236 KKVTKLGSQIKANRAKPRDVETESELKELLSEKEALQ 1272 >UniRef50_UPI000196BD8D hypothetical protein CATMIT_02256 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196BD8D Length = 1150 Score = 147 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 55/381 (14%), Positives = 105/381 (27%), Gaps = 16/381 (4%) Query: 452 GAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPD---GNRFYLPKEHMTFSLITDAWI 508 T I++ + L G +L D + L + + Sbjct: 683 LLNRFTTTKEKKQILSDLKEGNIDLLVGTHRILSKDVEFKDLGLLCIDEEQRFGVRQKEK 742 Query: 509 CPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGL 568 K +D TP +P + + + + + + Sbjct: 743 IKNLRKTIDVLTLTATP-IPRTLQMSIMGIRGLSQIETPPLNRLPVQTYVSEKSWALIKQ 801 Query: 569 AKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNG 628 R+ + + +I + + R Q L+ F Sbjct: 802 VIERELSRNGQVFYLHNRTENIYEIASTLQTLLPHARIGVGHGQMDKTELEDVMTDFVEK 861 Query: 629 QLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFIL 688 + ++L C+T +E G+D T+ + + V RS L Sbjct: 862 KYDILVCTTIIETGIDIPNANTIIIENADKFGLAQLY-QIKGRVGRSARIAYAYLLYTKD 920 Query: 689 PAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRY 748 A A +R+ I+ QL S + D+ + I V + D Y Sbjct: 921 RAMTEEAQKRLTAIKEFTQLG---SGYKIAMRDLSIRGSGDILGGEQAGFIDQVGF-DMY 976 Query: 749 LQNPVALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQW 808 + +L + + K+ + V + D P + D + +Q Sbjct: 977 ------MKILQDAIDEKQGKIKEDDTVPSRNISVDGYIPEDYVESDMEKLELYQRVYKAN 1030 Query: 809 FAAALGRPVELTVFDSPRDIP 829 AL R VE + D +P Sbjct: 1031 DLEALKR-VEQELTDLYGVLP 1050 >UniRef50_D0TGP7 DEAD/DEAH box helicase domain-containing protein n=1 Tax=Bacteroides sp. 2_1_33B RepID=D0TGP7_9BACE Length = 2046 Score = 146 bits (366), Expect = 6e-33, Method: Composition-based stats. Identities = 84/713 (11%), Positives = 169/713 (23%), Gaps = 120/713 (16%) Query: 16 YEVAFCNDCNEP-HLL---ARDKKGKLVQWENKGGDEFSLQDEVPVEHDATEEKVEKENS 71 + FC DC L A D + ++ V + ++ + +E Sbjct: 482 LPMYFCRDCGASGWLSRRLATDDRYCSDVKTINTSFMNRDKEVVLLNIESKRHEAVEEYI 541 Query: 72 FQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCSASGCGYRGMSG 131 + L + + D T R+ + + + + + + C +G Sbjct: 542 SEGNLNVTHYVKVKDLTEASSSDEGTIRLRICS-KTGTNKNGNQKFARTCPEC-----NG 595 Query: 132 KQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQGT 191 + + VL D R+++ FT+S Q Sbjct: 596 NDTICEIGGRTSTLSSVAISQVLSSDFDHAE-------------ATDRKILMFTNSVQDA 642 Query: 192 ARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARAKQAREQAEEYR 251 A A + R R S+ + ++ + + +L +L K Sbjct: 643 AHEAGFYEARTFRFLFRQSMQKYINT---------LDGSINLVELQKGFKA--------- 684 Query: 252 SWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERADIRGPVLQYN 311 Q + L + + E + R D Sbjct: 685 --YWHAQLSEEEYYHRFLPADLASHIDLNCNYREGDGFMSNFKQEFETRVDWEITSEFGL 742 Query: 312 HYLKPEVFNENGGPLKLSEMLLFREFMRR---PKRTNSLETQG-----LVQVGYQGLEKI 363 + G + E +N++E Y L+++ Sbjct: 743 TAQLGRTLEKTGASASFIKTEKIEEVYSAMVDWMNSNNMEQMADKERDFCHFVYGILQRM 802 Query: 364 HKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVRNPESK 423 ++ L + L+ +F K GS K + Sbjct: 803 -RTHGAVDHPYLAKYREEALTQWALNWNKDGRHFLN-----KRLGGSMQFPK-LVGTWFT 855 Query: 424 DPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLT--GPL 481 D N R G + N + + N ++++ + G L Sbjct: 856 DKNANMLDMTVLRREGKYNWYSLYFFKQFNDIGISN--NMGLFNEFMRKLLDTMVEVGLL 913 Query: 482 AVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQY 541 G + + + + S C L A E Y Sbjct: 914 NKQPQGGGNYAICPDQIWVSKKVKHIQCDSCQSRLCVA--------TDDELAEGTNCLDY 965 Query: 542 DTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGG 601 N + + +R + Sbjct: 966 KCRGTYSEETRP--------------------------------ELNYYLQVYNRNISPR 993 Query: 602 FYYRTAEHSAQQSSERLQSYEKMFKNGQL----NVLNCSTTMEMGVDTDRVMTLASRSQQ 657 Y EH+ + + E FK NVL ++T+EMG+D + + + + Sbjct: 994 VY--ANEHTGLLERNKREKLEIDFKKHPTPSSTNVLVATSTLEMGIDIGDLNVMGNANVP 1051 Query: 658 ATIPGPEWHLNDELVVRSLGYK----------TVELNEFILPAKATNAVERVK 700 + R G ++ + PA+ Sbjct: 1052 PKP--SNFLQRVGRAGRKEGSALVLNYAHASEPHDMYYYTYPAEMMQGEVTTP 1102 >UniRef50_Q4C992 Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal n=1 Tax=Crocosphaera watsonii WH 8501 RepID=Q4C992_CROWT Length = 1257 Score = 145 bits (364), Expect = 8e-33, Method: Composition-based stats. Identities = 94/848 (11%), Positives = 207/848 (24%), Gaps = 110/848 (12%) Query: 16 YEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHDATEEKVEKENSFQP- 74 V C C A G Q ++ + P Sbjct: 474 LPVMHCRSCGS---TAW--GGLRKQTGDRKISGELQDFYRAFFAKNPLTTYIFPSDESPE 528 Query: 75 PLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCSASGCGYRGMSGKQP 134 + + +R R G ++ N + + G Q Sbjct: 529 TGWRSWKLCCDCLTLTRRDAHHCSRCGGERLINVIEPDNIL----------HTSQRGGQT 578 Query: 135 FRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQGTARM 194 R P T +L + + S +LITF+DS Q A Sbjct: 579 KRMVSHDCPICETKNGLAIL-GSRAASLASAAISSLYASRYNDDHKLITFSDSVQDAAHR 637 Query: 195 AVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARAKQAREQAEEYRSWG 254 A + R+ LR ++ + L + QT R++ +Y + Sbjct: 638 AGFFEARTYRTTLRSALCQYLQYQGNGQTLEDIRTQFP---TYWRSQLFNGNDADYVATF 694 Query: 255 MPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERADIRGPVLQYNHYL 314 MP + + + QA A I W E+V E+ + + G + + Sbjct: 695 MPSDMEWLKEWEDL--QATGKAAESLVDLINKRLDW-EVVGEIGLKTSLGGSLERTESC- 750 Query: 315 KPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGLEKIHKSPLHWQEKG 374 G L + + + P LET + L ++ Q G Sbjct: 751 ------GVGVDESLLQTAIAQLLEILPNEIGGLETLTEHTLQQFILGFVYHLR---QRGG 801 Query: 375 LTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVRNPESKDPEDNQNRRWP 434 + ++ + ++ + + + + S + ++ W Sbjct: 802 IIHSVTESYITSGGNTFLLQRP-LFMPGFGPASLTPTYFSNYTVPRFETLLRTSEKSTWA 860 Query: 435 QIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLP 494 + + + L++ N + + + + + + + Sbjct: 861 ETWGFKLFMSYSPLIISQL----ENLYELTLKTLVEQGIFQAYSTNKK-----AKVWGIQ 911 Query: 495 KEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEI 554 + + + C + K L+ ++ + Sbjct: 912 QSALRLYTESQTLKCDHCGHRVTATPKDLS---------------TWEKMPCLRPLCQGH 956 Query: 555 WKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQS 614 ++ S N + + + + EH++ Sbjct: 957 YQTVPSPSG------------------------NFYRSLYTKGTLWRIF--AREHTSLLD 990 Query: 615 SERLQSYEKMFKNG----QLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDE 670 E + E F G N+L+ ++T+EMG+D + ++ S + Sbjct: 991 REVREELETQFITGQRRSDPNLLSATSTLEMGIDIGDLSSVLLCSVPPGQ--ANYQQRIG 1048 Query: 671 LVVRSLGYK---------TVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWD 721 R G +L + P K N ++ Sbjct: 1049 RAGRRDGNAFITAISNGTPHDLFFWAEPMKMINGDVSPPGSYLNASAILQRQLTAYCLDQ 1108 Query: 722 VLFNDHEEAQSLMNNTRITGV--HYTDRYLQNPVALA-------LLGSILRPLKTKLTDG 772 + Q L + + + P LL L + ++++ Sbjct: 1109 WVSKGIAPGQLLEELGTVLNTVQSVKESHFPYPWIQFVEEQQQQLLKDFLELFQEEISER 1168 Query: 773 AEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVELTVFDSPRDIPHHR 832 + L + + W + Q+ + H + Sbjct: 1169 TQTKLQHFIEKGQN--HEGGLTWRILNRLQEVVKERTRLKNQIETLRRRIKEKEKAAHSQ 1226 Query: 833 KLTVTFED 840 + Sbjct: 1227 NYEEEMAE 1234 >UniRef50_A3DIQ2 Transcription-repair coupling factor n=7 Tax=Clostridia RepID=A3DIQ2_CLOTH Length = 1178 Score = 144 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 64/438 (14%), Positives = 120/438 (27%), Gaps = 41/438 (9%) Query: 448 LLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPD---GNRFYLPKEHMTFSLIT 504 + + A I+ L G +L+ D + L + +T Sbjct: 709 ITVEVLSRFRTQAEQKRILKDVKAGMVDVLIGTHRLLQKDVCFKDLGLLVIDEEQRFGVT 768 Query: 505 DAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDY 564 +D TP +P + + + T + D Sbjct: 769 HKEKIKRMKTNIDVLTLTATP-IPRTLHMSLVGIRDISTIEEPPEERYPVQTYVMEYNDE 827 Query: 565 AEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKM 624 A R+ + + + R A Q + L++ Sbjct: 828 VVRDAINREMSRGGQVFYLYNRVRAINQKAAEIQKLVPEARVAIAHGQMNETELENIMFR 887 Query: 625 FKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELN 684 F NG+ ++L C+T +E G+D V T+ + L V RS + Sbjct: 888 FINGEYDILVCTTIIESGLDMPNVNTIIVEDADKMGLAQLYQLR-GRVGRSNRLAYAYIT 946 Query: 685 EFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHY 744 + A +R++ I+ + S F D+ + I V Y Sbjct: 947 YKKDKVLSEIAEKRLQAIKEFTEFG---SGFKIAMRDLQLRGAGNLLGPQQHGHIDSVGY 1003 Query: 745 TDRYLQNPVALALLGSILRPLKT----------KLTDGAEVTLDTLFKDKDRPGNRPFHD 794 D Y LL + L+ + +D + + + Sbjct: 1004 -DMY------CKLLAEAVNELRGIPVTKEDEEISIDVNVSAYIDNDYIGDENQKIDMYKK 1056 Query: 795 WMSIADFQDFADQWFAAALGRPVELTVFDSPRDIPHHRKLTVTFEDGQVLKIR-FDQGMG 853 SI D QD E + D +IP K + Q+ I+ + G Sbjct: 1057 IASINDEQDV----------IDAEDELMDRYGEIPQPVKNLL-----QIAYIKSLAKACG 1101 Query: 854 YWRINFSSQWHYFDFRDD 871 + + + F + + Sbjct: 1102 FSSVQEKNDTVIFQYSES 1119 >UniRef50_C3RLI7 Transcription-repair coupling factor n=3 Tax=Bacteria RepID=C3RLI7_9MOLU Length = 1144 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 57/422 (13%), Positives = 112/422 (26%), Gaps = 28/422 (6%) Query: 452 GAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPD---GNRFYLPKEHMTFSLITDAWI 508 T I++ L G +L D + L + + Sbjct: 684 LLNRFTSTKEKKQILSDLKLGNIDLLVGTHRILSKDIVFKDIGLLCIDEEQRFGVKQKEK 743 Query: 509 CPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGL 568 K +D TP +P + + + + + + Sbjct: 744 IKEYRKTIDVLTLTATP-IPRTLQMSLMGIRGLSQIETPPKNRQPVQTYVIEKNNVLIKQ 802 Query: 569 AKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNG 628 R+ + + ++ + R A Q L+ F N Sbjct: 803 IIERELARDGQVFYLYNRTSQIANVAYNITLSVPGARVAVGHGQMDKNELEDVMMRFVNK 862 Query: 629 QLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFIL 688 + NVL C+T +E G+D T+ + V RS L Sbjct: 863 EFNVLVCTTIIETGIDIPNANTIIVEDADKFGLSQLY-QIKGRVGRSNRGAYAYLLYNPT 921 Query: 689 PAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYT--D 746 A +R+K I+ +L S + D+ + + I + + Sbjct: 922 KVLNEEASKRLKAIKEFTELG---SGYKIAMRDLAIRGSGDILGGTQSGFIDSIGFEMYM 978 Query: 747 RYLQNPVALALLGSILRPLKTKLTDGAEV--TLDTLFKDKDRPGNRPFHDWMSIADFQDF 804 + LQ+ + + + K + +V + + D + + Sbjct: 979 KILQDAINEKMGKEDVEAEKEIKSVNVKVDGYIPHDYVSSDIEKLELYQRLDNAKTISGV 1038 Query: 805 --ADQWFAAALGRPVE----------LTVFDSPRDIPH----HRKLTVTFEDGQVLKIRF 848 F G+ E L + S I + K+ +TF G ++ Sbjct: 1039 DHLKSEFIDYYGKLPEEVSTLVEKRKLDILASTEIIENLAEVKGKMEITFTKGYSQNVKG 1098 Query: 849 DQ 850 DQ Sbjct: 1099 DQ 1100 >UniRef50_B5HBR0 Truncated helicase superfamily 1 and 2 ATP-binding protein n=1 Tax=Streptomyces pristinaespiralis ATCC 25486 RepID=B5HBR0_STRPR Length = 1904 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 99/662 (14%), Positives = 174/662 (26%), Gaps = 81/662 (12%) Query: 63 EEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCSAS 122 E E+ P ++ G+ + G N+ Q Sbjct: 136 ESDGERLRGLDPEEVLLDGDEIAEAPDSGVFVKLWYENGA---------QNEYSQQDRCP 186 Query: 123 GCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLI 182 CG + R G + V + + D RR + Sbjct: 187 ACG-----QAEGIRFLGAGVAPLASVAVTQLFTGGELPKKDREGR---------DRRRTL 232 Query: 183 TFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARAKQ 242 F D+ Q A +A + A + LR + E L + A E +AA ++ Sbjct: 233 IFNDAVQDAAHLAGFVASRAWKFSLRSLIDEQLREQTELEADFAARGVPLNELIAALVRR 292 Query: 243 AREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQA--ATGGKAATILVSRTWTE--MVNELK 298 A + + +P A L + T L T E + + L Sbjct: 293 AAVDEDRLLASVVPPDLHDVDRVAGLLAGKKRIPGRTWELVGERLALNTILEFGLNSRLG 352 Query: 299 ERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQ 358 ++ PE + L R + E G G+ Sbjct: 353 RTLELTRTAAAEVCLPDPERAAKTAEALYEKHERALRAGQLPEDPPEAGEEGGRPGAGHP 412 Query: 359 GLEKIHKSPLHWQEKGLTLDDWRDFL----------KVTLDHYVRESNFTQLDDELKNWI 408 + P + R L L +V++ + Sbjct: 413 AARRQLPPPGSEERLRHFEGFVRGLLEHVRVSGGIQHTWLKRFVKDEGRNRHSVWWGRPE 472 Query: 409 GSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINT 468 G + P + R + + A G + A + Sbjct: 473 GMPAFGRNSGAPAFVLVGG-RAGSTDFERVDSRENWYADFTERCLGLERSAAG--AFLAD 529 Query: 469 WLKEAWAQLTGPLAVLKPDGNR---------FYLPKEHMTFSLITDAWICPVTNKILDTA 519 L++ + G LAV + R + L H+ + D I T L Sbjct: 530 LLEQLAQEDIGALAVRRTGDARPGGGHGPRVYGLTPGHVRVRPLDDEQI---TRAALACP 586 Query: 520 FKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDP 579 G T +P L A ++ P R+ D+ Sbjct: 587 ECGWTQTVPPERVAVWQGLTCLVKGCAGELASPSPEAGGRAARDHRFD------------ 634 Query: 580 LIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQ----LNVLNC 635 + + G + AEH+ + + E+ F+ G+ NVL+C Sbjct: 635 ---------YYRRLYREA--GPYSVVAAEHTGVLKRKEREEVERGFREGRRHTDPNVLSC 683 Query: 636 STTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNA 695 + T+E+G+D ++ + S AT + RS G + P + Sbjct: 684 TPTLELGIDIGQLEAVVLASLPATT--ANYVQRVGRAGRSTGNALMVSLADTSPRALYHL 741 Query: 696 VE 697 E Sbjct: 742 AE 743 >UniRef50_C0GIY9 Transcription-repair coupling factor n=2 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GIY9_9FIRM Length = 1177 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 57/358 (15%), Positives = 100/358 (27%), Gaps = 15/358 (4%) Query: 452 GAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPD---GNRFYLPKEHMTFSLITDAWI 508 A + I + + G +L D + +L + + Sbjct: 709 ILSRFQSPAEQKETIKGLKEGTIDLVVGTHRILSKDIRFRDLGFLVVDEEQRFGVRHKER 768 Query: 509 CPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGL 568 + K LD TP +P + + + I D Sbjct: 769 IKMLKKNLDVLTMTATP-IPRTLHMSLVGVRDMSVIETPPEDRYPIQTYVLEYSDALIRE 827 Query: 569 AKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNG 628 A R+ + ++ E R A Q +RL+ F G Sbjct: 828 AVMRELNRGGQVYFVHNRVQSINRWAAKLQELMPEVRLAVAHGQMPEDRLEKVMMGFLEG 887 Query: 629 QLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFIL 688 + +VL +T +E G+D V T+ + + L V RS L Sbjct: 888 EYDVLLSTTIVEAGLDIPNVNTIIIQDADKFGLAQLYQLR-GRVGRSNRIAYAYLTYQKD 946 Query: 689 PAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRY 748 A +R++ I+ +L S F D+ + + V + D Y Sbjct: 947 KVLTEVAEKRLQAIKEFTELG---SGFKIAMRDLEIRGAGNILGPEQHGFMMAVGF-DLY 1002 Query: 749 LQNPVALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFAD 806 + LL +R K + D + + D P + I +Q A Sbjct: 1003 V------KLLEDAIRTYKGQEEDTRQEPRIEIQADAYLPASYISDARQKIVFYQKVAA 1054 >UniRef50_A9WU24 Transcription-repair coupling factor n=68 Tax=Actinobacteria (class) RepID=A9WU24_RENSM Length = 1278 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 50/302 (16%), Positives = 89/302 (29%), Gaps = 12/302 (3%) Query: 513 NKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKAR 572 +D TP +P + + + T + D A R Sbjct: 875 RNNVDVLAMSATP-IPRTLEMSLTGIRETSTLATPPEERHPVLTYVGPYTDKQASAAIRR 933 Query: 573 DWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNV 632 + + + + I V + R A Q S RL+ F + +V Sbjct: 934 ELMREGQVFFVHNRVSSIERIAAHVQQLVPEARIAVAHGQMSESRLEQIIVDFWEKRFDV 993 Query: 633 LNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKA 692 L C+T +E G+D TL H V R Sbjct: 994 LVCTTIIETGLDISNANTLIVDGADKYGLSQL-HQLRGRVGRGRERAYAYFLYPAEKPLG 1052 Query: 693 TNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNP 752 A+ER+K + H +L + D+ + I GV + D Y++ Sbjct: 1053 EVALERLKAVAAHNELG---AGMQLALKDLEIRGAGNLLGGEQSGHIAGVGF-DLYIR-- 1106 Query: 753 VALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAA 812 L+G + + + D A L + P + + + + ++ A AA Sbjct: 1107 ----LVGEAVADYRGETEDKAADMKIELPVNAHLPHDYVPGERLRLEAYRKLAAAASNAA 1162 Query: 813 LG 814 + Sbjct: 1163 ID 1164 >UniRef50_A1HRU9 Transcription-repair coupling factor n=2 Tax=Veillonellaceae RepID=A1HRU9_9FIRM Length = 1109 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 53/389 (13%), Positives = 107/389 (27%), Gaps = 22/389 (5%) Query: 513 NKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKAR 572 +D TP +P + + + + A R Sbjct: 696 RTNIDVLTLSATP-IPRTLHMSLVGARDMSIIETPPEERYPVQTYVVEYHEEVVRDAIRR 754 Query: 573 DWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNV 632 + + ++ R+ E R Q S +RL+ F G ++ Sbjct: 755 ELRRGGQVYFVYNRVQTIDKMHSRLSEILPDARIGVAHGQMSEDRLERVMLDFYEGNYDI 814 Query: 633 LNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKA 692 L C++ +E G+D T+ + V R+ Sbjct: 815 LVCTSIIESGLDVPNANTIIVYDADKFGLAQLY-QMRGRVGRTHRMAYAYFTYQRDKVLT 873 Query: 693 TNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNP 752 A +R++ I+ +L + F D+ + I V + Sbjct: 874 EVAEKRLQAIKEFAELG---AGFKIAMRDLEIRGAGNILGPQQHGHILSVGFE------- 923 Query: 753 VALALLGSILRPLKTK-LTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAA 811 + LL ++ L+T + + D G+ I +Q A Sbjct: 924 MYCRLLDEAVQELRTGKVVQPPPEPVLEFNVDAYLSGDYISDAMHKIEVYQRIAAIRTEE 983 Query: 812 ALGRPVELTVFDSPRDIPHHRKLTVTFEDGQVLKIR-FDQGMGYWRINFSSQWHYFDFRD 870 + V+ + D + P + V +I+ + + +G I F D Sbjct: 984 HISELVD-ELIDRFGEPPQPVQNLF-----MVARIKNYARVLGIRSIFQRRDHVEIQFTD 1037 Query: 871 DVSFQLVKM--AQACKEGNVANSEESWAT 897 + L + ++ G V+ T Sbjct: 1038 RPNIGLDDIMALKSTYPGRVSIQPGPPQT 1066 >UniRef50_C5EM54 Transcription-repair coupling factor n=3 Tax=Clostridiales RepID=C5EM54_9FIRM Length = 1186 Score = 143 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 46/315 (14%), Positives = 92/315 (29%), Gaps = 14/315 (4%) Query: 516 LDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWV 575 +D TP +P + + V I + A R+ Sbjct: 785 VDVLTLTATP-IPRTLHMSLAGIRDMSVLEEPPVDRTPIQTYVMEYNEEMVREAINRELA 843 Query: 576 SHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNC 635 + + ++ +R+ Q L+ F NG+++VL Sbjct: 844 RNGQVYYVYNRVTDIDEVANRIQALVPEAVVTFAHGQMREHELERIMADFINGEIDVLVS 903 Query: 636 STTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNA 695 +T +E G+D T+ + L V RS L A Sbjct: 904 TTIIETGLDIPNANTMIIHDADRMGLSQLYQLR-GRVGRSNRTSYAFLMYRRDKLLKEEA 962 Query: 696 VERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVAL 755 +R++ I+ +L S D+ + + V Y D Y Sbjct: 963 EKRLQAIREFTELG---SGIKIAMRDLEIRGAGNVLGAEQHGHMEAVGY-DLY------C 1012 Query: 756 ALLGSILRPLKTKL-TDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALG 814 +L + LK + + + T+ D P + +++ + ++ + Sbjct: 1013 KMLNEAVLALKGEKPDEDSYETVVECDIDAYIPSSYIKNEYQKLDIYKRISAIETEDEY- 1071 Query: 815 RPVELTVFDSPRDIP 829 ++ + D DIP Sbjct: 1072 MDMQDELMDRFGDIP 1086 >UniRef50_B8D013 Transcription-repair coupling factor n=1 Tax=Halothermothrix orenii H 168 RepID=B8D013_HALOH Length = 1170 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 51/304 (16%), Positives = 89/304 (29%), Gaps = 22/304 (7%) Query: 513 NKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKAR 572 + +D TP +P + + + I R A + Sbjct: 772 KRNVDVLTMTATP-IPRTLHMALVGVRDMSVIETPPENRYPIRTYIREFNKELIRDAVRK 830 Query: 573 DWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNV 632 + + + + + R A Q + +L+ F N Q +V Sbjct: 831 ELGREGQVYFVHNRVEDIQEQATMIKKLVPECRVAVAHGQMNEHKLERLMLDFYNHQYDV 890 Query: 633 LNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKA 692 L C+T +E G+D V T+ + L V RS L Sbjct: 891 LVCTTIIETGLDIPNVNTIIVNRADQMGLAQLYQLR-GRVGRSNRIAYAYLLYEKDRVLP 949 Query: 693 TNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNP 752 A +R++ I+ L S F D+ + I V ++ Sbjct: 950 EVAEKRLRAIKEFTNLG---SGFKIAMRDLEIRGAGNLLGPEQHGHIASVGFS------- 999 Query: 753 VALALLGSILRPLKTKLTD----GAEVTLDT------LFKDKDRPGNRPFHDWMSIADFQ 802 + LL + LK K D E+ LD + R + M++ DF+ Sbjct: 1000 LYCKLLEGAVEELKGKEKDKGITRVEIELDIDAYLPDEYITDSRQKIDIYKKIMALKDFE 1059 Query: 803 DFAD 806 + D Sbjct: 1060 EVED 1063 >UniRef50_C4LHL4 Transcription-repair coupling factor n=5 Tax=Bacteria RepID=C4LHL4_CORK4 Length = 1281 Score = 142 bits (356), Expect = 8e-32, Method: Composition-based stats. Identities = 51/323 (15%), Positives = 96/323 (29%), Gaps = 21/323 (6%) Query: 516 LDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWV 575 +D TP +P + + T + + QED A R+ + Sbjct: 844 VDMLTMSATP-IPRTLEMSMAGIRDMSTILTPPEDRHPVLTYVGVQEDKQIAAAIRRELL 902 Query: 576 SHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNC 635 + + + E R Q + ++L++ + F + + +VL C Sbjct: 903 RDGQVFYVHNRVRSIEQVAQHIRELVPEARVVVAHGQMNEDQLENTVEGFWDREYDVLVC 962 Query: 636 STTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNA 695 +T +E G+D TL + H V RS + Sbjct: 963 TTIVETGLDISNANTLIVENAHHMGLAQL-HQLRGRVGRSRERGYAYFLYPPSQTLTETS 1021 Query: 696 VERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVAL 755 +R+ I + L + D+ + I GV + D Y++ Sbjct: 1022 YDRLSTIAQNNDLG---AGMAVAMKDLEMRGAGNVLGAEQSGHIAGVGF-DLYVR----- 1072 Query: 756 ALLGSILRPLKT--------KLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQ 807 L+G + K + T + D P + + + +A ++D A Sbjct: 1073 -LVGEAVEAFKAMADGKPIDGSDKENKETRIDINVDAHIPTSYIASERLRLAAYRDLAQA 1131 Query: 808 WFAAALGRPVELTVFDSPRDIPH 830 AL V + D P Sbjct: 1132 KNEEALQ-NVRAELVDRYGQPPQ 1153 >UniRef50_B2GL97 Transcription-repair coupling factor n=3 Tax=Actinomycetales RepID=B2GL97_KOCRD Length = 1254 Score = 142 bits (356), Expect = 8e-32, Method: Composition-based stats. Identities = 45/290 (15%), Positives = 83/290 (28%), Gaps = 12/290 (4%) Query: 513 NKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKAR 572 +D TP +P + + + T + + A R Sbjct: 839 RTDVDVLAMSATP-IPRTLEMSMTGIRETSTLATPPEERHPVLTYVGPYTNKQVSAAIRR 897 Query: 573 DWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNV 632 + + + + + E R A Q + RL+ F + +V Sbjct: 898 ELMREGQVFFIHNRVSTIEAQAKELAELVPEARIAVAHGQMTESRLEQIIVDFWEKKFDV 957 Query: 633 LNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKA 692 L C+T +E G+D TL H V R + Sbjct: 958 LVCTTIVETGLDIANANTLIVDHADRYGLSQL-HQLRGRVGRGRERAYAYFLYPAEKPLS 1016 Query: 693 TNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNP 752 A+ER+K + H +L S D+ + I GV + D YL+ Sbjct: 1017 ETALERLKAVAAHNELG---SGMQLAMKDLEIRGAGNLLGGEQSGHIAGVGF-DMYLR-- 1070 Query: 753 VALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQ 802 L+G + + G L + P + + + + ++ Sbjct: 1071 ----LVGEAVAEYRGDQDTGPAEMKIELPVNAHLPHDYVPGERLRLEAYR 1116 >UniRef50_D2RAQ2 Transcription-repair coupling factor n=6 Tax=Actinobacteridae RepID=D2RAQ2_GARVA Length = 1202 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 40/295 (13%), Positives = 84/295 (28%), Gaps = 12/295 (4%) Query: 513 NKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKAR 572 +D TP +P + + + T + + ++ R Sbjct: 804 RTNVDVLSLSATP-IPRTLEMAVTGIREMSTLATPPEDRLPVLTYVGAYDNSQVAACIKR 862 Query: 573 DWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNV 632 + + + + + ++ E R A + ++L + + F + ++V Sbjct: 863 ELLRGGQVFYVHNRVEDISSVASKIQELVPDVRVAIAHGKMGEKQLDAVIRDFWHRDIDV 922 Query: 633 LNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKA 692 L C+T +E G+D TL H V R Sbjct: 923 LVCTTIIETGLDISNANTLIVDHADRFGLSQL-HQLRGRVGRGHERAYAYFLYDPSKPMT 981 Query: 693 TNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNP 752 + +R+ I H L S F D+ + I GV + D Y++ Sbjct: 982 QQSHDRLSTIAQHTALG---SGFDVAMKDLELRGTGNLLGDEQSGHIEGVGF-DLYVR-- 1035 Query: 753 VALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQ 807 ++ + K L + P + D + + ++ A Sbjct: 1036 ----MVSEAVEKYKEPERVEPVCVTIDLPVEASLPVDYIASDKLRLEAYRKLAAA 1086 >UniRef50_A9WHG9 Transcription-repair coupling factor n=3 Tax=Chloroflexus RepID=A9WHG9_CHLAA Length = 1185 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 49/336 (14%), Positives = 88/336 (26%), Gaps = 15/336 (4%) Query: 451 LGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPK---EHMTFSLITDAW 507 II + + G +L D L + + Sbjct: 695 EMLSRFRSPKEQDAIIRDLARGKIDIIIGTHRLLSNDVVFRNLGLVIIDEEQRFGVRHKE 754 Query: 508 ICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEG 567 + +D TP +P + + I +D+ Sbjct: 755 RLKLMRTEVDVLTLTATP-IPRTLHMALAGIRDLSVIDTPPEDRIPIKTYVVPTDDHLIQ 813 Query: 568 LAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKN 627 R+ + + +R+ R A Q + L+ F Sbjct: 814 EVIRRELEREGQVYVVHNRVQSIYHVAERLRRLVPEARIAVGHGQLAERELEQVMIDFFE 873 Query: 628 GQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFI 687 G+ +VL C+T +E G+D T+ + L V R L Sbjct: 874 GRYDVLVCTTIIESGLDVPNANTIIIDDATNYGLAQLYQLR-GRVGRGATRAYAYLLYNA 932 Query: 688 LPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDR 747 +A R++ IQ +L + F D+ + I V + Sbjct: 933 ARVMTNDARLRLEAIQEATELG---AGFRIAMRDLEIRGAGNLLGAEQSGHIAAVGFD-- 987 Query: 748 YLQNPVALALLGSILRPLKTKLTDGAEVTLDTLFKD 783 + LL +R LK + + AE D+ Sbjct: 988 -----LYSRLLEQAVRKLKQDVDELAETATDSSVTP 1018 >UniRef50_C4ZBV9 Transcription-repair coupling factor n=6 Tax=Clostridiales RepID=C4ZBV9_EUBR3 Length = 1177 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 66/447 (14%), Positives = 119/447 (26%), Gaps = 43/447 (9%) Query: 456 KTVNAATIDIINTWLKEAWAQLTGPLAVLKPD---GNRFYLPKEHMTFSLITDAWICPVT 512 A I K + G +L D + L + +T Sbjct: 712 FRSAAEQKKTIEKLKKGEVDIIIGTHRILSKDVQFKDLGLLVIDEEQRFGVTHKEKIKQM 771 Query: 513 NKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKAR 572 +D TP +P + + + + I D A R Sbjct: 772 KVNVDVLTLTATP-IPRTLHMSLIGIRDMSVLEEPPMDRVPIQTYVMEYNDELVREAINR 830 Query: 573 DWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNV 632 + + + DI ++ E A Q L+ F NG+++V Sbjct: 831 ELARNGQVYYVYNKVRDIADITAKLQELVPDATVAFAHGQMKETELERIMYRFINGEIDV 890 Query: 633 LNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKA 692 L +T +E G+D V T+ + L V RS L Sbjct: 891 LVSTTIIETGLDISNVNTMIIHDADNMGLSQLYQLR-GRVGRSNRTAYAFLMYRRNKMLK 949 Query: 693 TNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNP 752 A +R+ I+ + L S F D+ + + V Y D Y Sbjct: 950 EVAEKRLAAIKEYSDLG---SGFKIAMRDLEIRGAGNLLGAEQSGHMEAVGY-DLY---- 1001 Query: 753 VALALLGSILRPLKTKLT-DGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQ---- 807 +L ++ K T + D P +++ + ++ A Sbjct: 1002 --CKMLSEAVKEAKGIEDISDKFDTTVDIVTDAYIPAGYIANEFQKLDIYKRIAGIETEE 1059 Query: 808 -------WFAAALGRPVE----LTVFDSPRDIPHHRKLTVTFEDGQVLKIRFDQGMGYWR 856 G P + L + + H +T + G ++K+ R Sbjct: 1060 EKDEMLEELIDRFGEPPKSVLSLLRVARLKALAHAVYITEIKQTGSLIKLTM---FERAR 1116 Query: 857 ---------INFSSQWHYFDFRDDVSF 874 I F+ ++ F Sbjct: 1117 INPEKIPELIARYKSSLKFNMAENPYF 1143 >UniRef50_A5UZG2 Transcription-repair coupling factor n=2 Tax=Roseiflexus RepID=A5UZG2_ROSS1 Length = 1265 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 52/340 (15%), Positives = 92/340 (27%), Gaps = 19/340 (5%) Query: 456 KTVNAATIDIINTWLKEAWAQLTGPLAVLKPD---GNRFYLPKEHMTFSLITDAWICPVT 512 +I+ + + G +L D + L + + Sbjct: 753 FRSAKEQSEIVQRLARGEIDIIIGTHRLLSKDVVFKDLGLLVIDEEQRFGVRHKERIKQL 812 Query: 513 NKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKAR 572 +D TP +P + + I ++ A R Sbjct: 813 RTNVDVLTLTATP-IPRTLHMALAGIRDLSIIDTPPEDRIPIKTYVLPYDERLIREAILR 871 Query: 573 DWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNV 632 + + + DR+ R A Q +L+ F G+ +V Sbjct: 872 ELDRGGQVYFVHNRVQSIYYVADRLRRLVPEARIAVGHGQLEEHQLERVMLDFFTGRDDV 931 Query: 633 LNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKA 692 L C+T +E G+D T+ + L V RS L Sbjct: 932 LVCTTIIESGLDVPNANTIIIDDATNFGLAQLYQLR-GRVGRSTQRAYAYLFYKSERPST 990 Query: 693 TNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNP 752 A ER++ IQ +L + F D+ + I V + Sbjct: 991 PEAQERLRAIQEATELG---AGFRIAMRDLEIRGAGNLLGAEQSGHIAAVGFD------- 1040 Query: 753 VALALLGSILRPLKTKLTDGAEVT----LDTLFKDKDRPG 788 + LL +R LK +L +T + T +P Sbjct: 1041 LYSRLLEQAVRTLKQRLIATNFITGTDAMRTSPGAPAQPS 1080 >UniRef50_C9ZFT8 Putative RNA helicase n=1 Tax=Streptomyces scabiei 87.22 RepID=C9ZFT8_STRSW Length = 2326 Score = 141 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 84/710 (11%), Positives = 174/710 (24%), Gaps = 82/710 (11%) Query: 16 YEVAFCNDCNE---PHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHDATEEKVEKENSF 72 +C +C L +LV +++ +D+ + + + E++ + Sbjct: 520 LPAVYCRNCGRSGWAALSPETDPQQLVMAQDRIWRAGVGRDKRRIRYFVSATARERQQAL 579 Query: 73 QPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCSASGCGYRGMSGK 132 + ++ LD + +++ + Sbjct: 580 DALTGARPSDGGVDPLSVVVLDGGQGTYRLPTTGDGGDLVDAWFTLAVLDR--KTADRAA 637 Query: 133 QPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQGTA 192 + R + + + G R+ + F DS Q A Sbjct: 638 KDDRCPACHTDNSIRFLGTARAALASAAVTQLFTGGDIALVP--EERKTLLFNDSTQDAA 695 Query: 193 RMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARAKQAREQAEEYRS 252 A + + + LR + L L L + + E + Sbjct: 696 HRAGYVANASYKFSLRSLLAHNLDESGAPTA---------LNDLIGHVLDSVDDPEALAA 746 Query: 253 WGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERADIRGPVLQYNH 312 PD + A RTW + L + + Sbjct: 747 VVPPDLHDEPGVDRLLSGRGTGDA-----------RTWRLIGERLAFATVMEFGLR-SRM 794 Query: 313 YLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGLEKIHKSPLHWQE 372 E+ + +++ + R T + + + + + + Sbjct: 795 GRTLELTRTAAAEVTVADPDRVTDLARDLHLTLPGQLLAVGGLPTPE-----RYLAYVRG 849 Query: 373 KGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVRNPESKDPEDNQNRR 432 L LD +++E+ + + G + V P + Sbjct: 850 LLERLRLRGAVRHHWLDAWIKEAGTDRHVIWGRRPDGMPAFPEGVAPPRFLLDGQKDPSK 909 Query: 433 WPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNR-F 491 + I V A + L + + R + Sbjct: 910 FDSI--TGRLGWYQDWTRRCLDLDAVGATEY--LRRLLPALADAGVLAVRTARDRQTRVY 965 Query: 492 YLPKEHMTFSLITDAWI------CPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFV 545 L H+ L+ DA + C A + T + Sbjct: 966 GLQPGHIEVRLLDDAVVNKAFVACEDCRWQQVVAPERRTRWYGHP------------CPR 1013 Query: 546 AQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYR 605 + + DR+ + + V D R+ G +R Sbjct: 1014 YRCKGRLTAPQADRTTAEAEVSRFGSGPLVPERDYT---------GDYYRRLYLTGGTFR 1064 Query: 606 --TAEHSAQQSSERLQSYEKMFKNG----QLNVLNCSTTMEMGVDTDRVMTLASRSQQAT 659 TAEH+ S + E+ F+ G NVL+C+ T+E+G+D + + S A Sbjct: 1065 VVTAEHTGMLSRPERERVERAFRTGTHYTDPNVLSCTPTLELGIDIGDLSAVLLGSLPAG 1124 Query: 660 IPGPEWHLNDELVVRSLGYKTV---------ELNEFILPAKATNAVERVK 700 + R G V +L P + Sbjct: 1125 P--ANYVQRAGRAGRRTGNALVVAFGGRKARDLYYLDEPREMIAGTILPP 1172 >UniRef50_C4G278 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G278_ABIDE Length = 1184 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 60/387 (15%), Positives = 122/387 (31%), Gaps = 24/387 (6%) Query: 513 NKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKAR 572 + +D TP +P + + + V I +D A R Sbjct: 774 RENVDVLTLSATP-IPRTLHMSLVGIRDMSVLEEPPVDRIPIQTYVLEHDDEIIREAINR 832 Query: 573 DWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNV 632 + + + + + ++ E R + Q + L+ F NG+++V Sbjct: 833 EIGRNGQVYYVYNRVSGIDERAAKLAELIPGARVSFAHGQMNERELERIMIEFINGEIDV 892 Query: 633 LNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKA 692 L +T +E G+D V T+ + L V RS L Sbjct: 893 LVSTTIIETGLDISNVNTIIIDDADKMGLSQLYQLR-GRVGRSSRTSFAFLMYKRDRMLK 951 Query: 693 TNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNP 752 A +R+ I+ L S F D+ + + V Y D Y Sbjct: 952 EIAEKRLAAIKEFTDLG---SGFKIAMKDLEIRGAGNLLGKSQSGHMEAVGY-DLY---- 1003 Query: 753 VALALLGSILRPLK-TKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAA 811 +L ++ LK K+ T + P + ++ + ++ A + Sbjct: 1004 --CKMLNEEVKRLKGEKVAADEFETAVDIEASAYIPADYIRNEVARLEMYKRIAGIFTEE 1061 Query: 812 ALGRPVELTVFDSPRDIPHHR--KLTVTFEDGQVLKIRFDQGMGYWRINFSSQWHYFDFR 869 L ++ + D ++P + ++F +I G ++ + F Sbjct: 1062 ELS-ELKDELIDRYGEMPLAVDNLVNISFIRQMAHEI------GTTKVECKGETARFSIY 1114 Query: 870 DDVSFQLVKMAQ--ACKEGNVANSEES 894 ++V F + K+++ A EG + Sbjct: 1115 NEVKFDIDKISEVMADNEGRLRLRSGK 1141 >UniRef50_A8RWH1 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RWH1_9CLOT Length = 1200 Score = 140 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 50/330 (15%), Positives = 96/330 (29%), Gaps = 14/330 (4%) Query: 516 LDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWV 575 +D TP +P + + V I + A R+ Sbjct: 801 VDVLTLTATP-IPRTLHMSLAGIRDMSVLEEPPVDRTPIQTYVMEYNEEMVREAINRELA 859 Query: 576 SHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNC 635 + + ++ RV Q L+ F NG+++VL Sbjct: 860 RNGQVYYVYNRVTDIDEVAGRVQALVPDAVVTFAHGQMREHELERIMADFINGEIDVLVS 919 Query: 636 STTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNA 695 +T +E G+D T+ + L V RS L A Sbjct: 920 TTIIETGLDISNANTMIIHDADRMGLSQLYQLR-GRVGRSNRTSYAFLMYKRDKLLREEA 978 Query: 696 VERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVAL 755 +R++ I+ +L S D+ + + V Y D Y Sbjct: 979 EKRLQAIREFTELG---SGIKIAMRDLEIRGAGNVLGAEQHGHMEAVGY-DLY------C 1028 Query: 756 ALLGSILRPLKTK-LTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALG 814 +L + LK + L + + T+ D PG +++ + ++ + Sbjct: 1029 KMLNQAVLALKGETLEEDSYDTVVECDIDAYIPGRYIKNEYQKLDIYKRISAIETEEEY- 1087 Query: 815 RPVELTVFDSPRDIPHHRKLTVTFEDGQVL 844 ++ + D DIP + + + L Sbjct: 1088 MDMQDELMDRFGDIPRSVENLLKIASIRAL 1117 >UniRef50_C9YW00 Putative RNA helicase n=1 Tax=Streptomyces scabiei 87.22 RepID=C9YW00_STRSW Length = 2240 Score = 140 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 94/722 (13%), Positives = 186/722 (25%), Gaps = 100/722 (13%) Query: 16 YEVAFCNDCN----EPHLLARDKKG-----KLVQWENKGGDEFSLQDEVPVEHDATEEKV 66 +C DC D ++ + G D+ +++ + E Sbjct: 498 LPAVYCRDCGRSGWAVFSPESDDHDVQFDTYKIRRASTGQDKIRVRNLIAASDQEAREGS 557 Query: 67 EKE--NSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINN------DSIPLIINDIEQV 118 + A+ AG L LD +R+ + + D+ + + Sbjct: 558 GAAPMPASGRSGRGASPALQGAGGMLMVLDGARKRLRLPDPLNDYDKDTKEPRLTARDSA 617 Query: 119 CSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRG 178 G + + G + + + G L R Sbjct: 618 FVLVHFGATANTAAREDWCPACGERNAIRYLGTGAAAMAAASITRLFTGGELDKEL--RE 675 Query: 179 RRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAA 238 + + F DS Q A A + + LR + L +A L L A Sbjct: 676 DKTLMFNDSVQDAAHRAGFVANRSYTFSLRALLARHLR----------HDAPTALNDLIA 725 Query: 239 RAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELK 298 QA + + PD +TW + L Sbjct: 726 NVVQATTDKDTLSAVVPPDLHGFKGVDRLL----------SGQGRGGDLKTWRLIGQRLA 775 Query: 299 ERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQ 358 A + + E+ +++ + ++R + LV+ Sbjct: 776 FEALMEFGFR-SRNGRTLELTRTAAAQVRIEDPAAAVALVKRVHEECNRTDLTLVE---- 830 Query: 359 GLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQ---LDDELKNWIGSRFSSK 415 + D + FL+V L+ +R LD + +R+ Sbjct: 831 ----------------QSDDRYLAFLRVFLE-RLRTRGAVSHKWLDKYVDEAGTTRYFIW 873 Query: 416 FVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWA 475 R P + + + ++ +D+ E W+ Sbjct: 874 GNRPPGMRAFPRGVAAPVFLLGQPKDRSEFDFATGRLSWYERWAGRCLDVPREVAPEFWS 933 Query: 476 QLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEH 535 +L LA ++ D+ + ++ + L H Sbjct: 934 RLLPELA-----------GAGLLSVRTPNDSSL-----RVYGLKPGNIEALLLEDEQVRH 977 Query: 536 LTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIA--QLRSENVWTDI 593 + F ++ P + Q + + R P R + D Sbjct: 978 SYVRCPVCF-WEQTVHPSLLDQWHDQPCPSYRCRRGRLVAGDRPEALGVHHRDRDYTQDY 1036 Query: 594 NDRVV--EGGFYYRTAEHSAQQSSERLQSYEKMFKNG----QLNVLNCSTTMEMGVDTDR 647 R+ G + AEH+ + + + E+ FK G NVL+C+ T+EMG+D Sbjct: 1037 YRRLYRKAGPYQVVVAEHTGMLTRAQREKVEEAFKRGGGFKDPNVLSCTPTLEMGIDIGD 1096 Query: 648 VMTLASRSQQATIPGPEWHLNDELVVRSLGY---------KTVELNEFILPAKATNAVER 698 + + + + R G + +L P Sbjct: 1097 LSAVVLAALPRRP--ANYAQQVGRAGRRTGNAFLLTIPDRRRRDLYFLERPKDLIAGTIV 1154 Query: 699 VK 700 Sbjct: 1155 PP 1156 >UniRef50_B3PFQ1 Transcription-repair coupling protein Mfd n=58 Tax=Gammaproteobacteria RepID=B3PFQ1_CELJU Length = 1184 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 68/482 (14%), Positives = 139/482 (28%), Gaps = 37/482 (7%) Query: 412 FSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLK 471 + + + + ++ WP R K + I Sbjct: 693 LAPTTLLAQQHYESLKDRFAEWPITIEVLSRFRTTKEVNQVLERLAEGKVDI-------- 744 Query: 472 EAWAQLTGPLAVLKPD---GNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLP 528 + G +L+PD N L + + +D TP +P Sbjct: 745 -----IVGTHKLLQPDIKFKNLGLLIIDEEHRFGVRQKEQIKALRAEIDILTLTATP-IP 798 Query: 529 THISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSEN 588 ++ + + R+ ++ A R+ + + + Sbjct: 799 RTLNMSMAGIRDLSIIATPPARRLSVKTFVRTYDEAVIKEAILREILRGGQVYYLHNEVD 858 Query: 589 VWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRV 648 + + E R A Q L+ F + + N++ C+T +E G+D Sbjct: 859 TIEKVARELQELIPEARIAVGHGQMRERDLERVMSDFYHKRFNIMVCTTIIETGIDIPSA 918 Query: 649 MTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQL 708 T+ H V RS L A +AV+R++ I + L Sbjct: 919 NTIIINRADKFGLAQL-HQLRGRVGRSHHQAYAYLLTPERRAMTDDAVKRLEAISAAEDL 977 Query: 709 NGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKTK 768 + F +D+ E + +I + ++ + + +L ++ ++ Sbjct: 978 G---AGFTLATYDMEIRGAGELLGEEQSGQIQTIGFS-------LYMEMLDRAVKAIRQG 1027 Query: 769 LTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALG----RPVELTVFDS 824 E L R D++ + + A A R +++ + D Sbjct: 1028 KQADIEQALKESIDINLRIPALIPSDYLPDVHLRLVMYKRLANAENAESLRDLQVEMIDR 1087 Query: 825 PRDIPHHRKLTVTFEDGQVLKIRFDQ-GMGYWRINFSSQWHYFDFRDDVSF-QLVKMAQA 882 +P K +KI +Q G+ N F V Q+VK+ Q+ Sbjct: 1088 FGLLPDAVKNLFRVT---QIKITAEQLGITKIEANSRGGKIEFSGATGVDPLQIVKLVQS 1144 Query: 883 CK 884 Sbjct: 1145 QP 1146 >UniRef50_Q5P8U3 Helicase (Putative RNA helicase),fragment n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5P8U3_AZOSE Length = 1246 Score = 138 bits (347), Expect = 8e-31, Method: Composition-based stats. Identities = 103/856 (12%), Positives = 193/856 (22%), Gaps = 153/856 (17%) Query: 16 YEVAFCNDCNEPHLLARDK-KGKLVQWENKGGDEFSLQDEVPVEHDATEEKVEKENSFQP 74 + C DC H K + DE +E + + Sbjct: 478 LPLVQCADC---HTTGWLGRKPNGQTVISTDLDEIYNTWFS-----GQQEALRLYATEGL 529 Query: 75 PLIIAAGETSEAGYTLQRLDRQTR-------------RIGVINNDSIPLIINDIEQVCSA 121 + G + + L R+ N + + + Sbjct: 530 SRPLCDGISQHLCTSCAHLQSAGHCTACGHEDLVAVFRVTATRNSTNKDGLAFAWHDPTC 589 Query: 122 SGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRL 181 CG R R A LG + S ++L Sbjct: 590 PACGSRHRQILLGARNATLGAVAIEQSWA----------------------SPFNDDKKL 627 Query: 182 ITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARAK 241 I F+DS Q A A + +R + +++ P + + AA Sbjct: 628 IAFSDSVQDAAHRAGFFTARTYLNTVRTGLAKVIDQMAAQ--GDEPLRWSSFLERAATTW 685 Query: 242 QAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERA 301 + E + + R W E + Sbjct: 686 RTGGSTLEMPRETFVAE--------------------FIGPNMTWQRDWAESLQL----- 720 Query: 302 DIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGLE 361 H P K F EF +R +L+T G + + E Sbjct: 721 ----------HDRLPGDSKLPERVRKRLGWQAFAEFTYLSRRGRNLDTIGKATLAPKADE 770 Query: 362 ----KIHKSPLHWQEKGLTLDDWRDFLKVT--LDHYVRESNFTQLDD-ELKNWIGSRFSS 414 P + G+ + + L ++R+ + G+ F+ Sbjct: 771 LRGAVTSLLPRLHETFGIRHANADTVFQWVWGLLCHLRQRGAVAHPELGTYTRDGNIFAF 830 Query: 415 KFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWL--KE 472 + P + P +++ + L K Sbjct: 831 THTQGRAEWLPGLGEKTPHPVFLTLGQHRGFDRVVGSAGASFYQTWFKACFASGLLPEKA 890 Query: 473 AWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHIS 532 T + VL G L L H Sbjct: 891 DLEIYTAAIEVLVEHGLLLRLDSTQGDVIAAN-------------------PDALFLHTR 931 Query: 533 FEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTD 592 + AQ ++ + + E A+ ++ D Sbjct: 932 VARIGSAQGKRHLSVPADVASALLGMPCLDAPQERYAEID------------TADGWLAD 979 Query: 593 INDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQL-----NVLNCSTTMEMGVDTDR 647 R Y +AEH+ ++ ++ E FK N+L+ + T+EMGVD Sbjct: 980 RFSRGDLRRVY--SAEHTGLLQRDQREALEARFKAKDPAPWYENLLSATPTLEMGVDIGD 1037 Query: 648 VMTLASRSQQATIPGPEWHLNDELVVR----------SLGYKTVELNEFILPAKATNAVE 697 + ++ S + R + G +L F A+ Sbjct: 1038 LSSVMLCSVPPNQAS--YLQRIGRAGRHDGNALATTLADGASPHDLYFFEDTAEMLAGEV 1095 Query: 698 RVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVAL-- 755 I + F D + + E + + + D Sbjct: 1096 MPPGIFLKAAEVLRRQLFAFCLDDWVGSGVPETA--LPDKTSAALDARDSVDTTRFPATF 1153 Query: 756 ---------ALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFAD 806 LL + L + L D L + + + + Sbjct: 1154 LDYLHLHEDRLLAGFMALLGSDLDDRVAARLQGFMQGTEHEDALRLRLNKFLEELAKERQ 1213 Query: 807 QWFAAALGRPVELTVF 822 A ++ + Sbjct: 1214 SHSQRAKQIKKQIDIL 1229 >UniRef50_A0Z3W5 Putative helicase n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z3W5_9GAMM Length = 2067 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 84/762 (11%), Positives = 205/762 (26%), Gaps = 124/762 (16%) Query: 14 PVYEVAFCNDCNEPHLLAR---------------------DKKGKLVQWENKGGDEFSLQ 52 + EV +C C L G +V+ + + Sbjct: 607 RLLEVLYCECCGTQLLSGFRIPLSKVKTELSFLPGNPEQLPDDGSVVRTDETDYATIGVI 666 Query: 53 DEVPVEHDATEEKVEKENS-FQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIP-- 109 +P + A + + + ++A + D ++ + + ++I Sbjct: 667 YLLPTKDSAADSLEDWQQGSIARGFFGDPVSRAQASWQPAIYDFESGVVTLGTFENITKS 726 Query: 110 --------------LIINDIEQVCSASGCGYRGMSGK----QPFRRALLGGPFYVTNIVP 151 ++ C K P R G + Sbjct: 727 EVHCLFFDLIASPEESVDYKAMPQKCPQCHSDYSRRKGGRYSPIRAFATGLVQMSLLLSK 786 Query: 152 TVLEYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSV 211 ++ +S ++L+ F+DSRQ AR+A +++E ++ V Sbjct: 787 HLMMSLPKGSS----------------KKLVAFSDSRQAAARLADDVEKEQWSHLIQHFV 830 Query: 212 VEILSWHQRTQ---TSTAPNANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAE- 267 ++ +S + + D E ++A AK + + + Sbjct: 831 LDEISSNVKNSNFVAIKQLLEICDAEGISAGAKFLTRLKASLPDQSFREIVSVFEDYKTI 890 Query: 268 -QLEQAYQAATGGKAATILVSRTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPL 326 + + A ++ T ++++ P+ L G + Sbjct: 891 TEYPDLADDFKKDRVAKSRLATPETVRLDDVFSIPTPDKPLSGLWSNLVKLGVPPAGPDV 950 Query: 327 KLSEMLLFREF-----MRRPKRTNSLETQGLVQVGYQGLEKIHKSPLHWQEKGLTLDDWR 381 + +F RP + E L++ Q + K K L + + Sbjct: 951 RFQRWPELFDFTDGMPSLRPSDELTSEDGTLLRNLGQEIRKASW--KAISGKLLYDLEAK 1008 Query: 382 DF--------LKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVRNPESKDPEDNQNRRW 433 F KVT + F+++ + + + + NP D + R Sbjct: 1009 GFGYFVIPPNSKVTPPGSLTVQTFSEICSSVLRILTE----ERLVNPYPFDQGGAEAWRD 1064 Query: 434 PQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYL 493 + N + S + ++L + + ++ V + Sbjct: 1065 DEPNNKSRSEKKKRILNYLEACAVTWTTQMGTLQEAVRTQLQSAQHQWGV---------V 1115 Query: 494 PKEHMTFSLITDAWI---CPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVT 550 ++ +++ + CP +I + +S + A + Sbjct: 1116 ELSYLWITVVDASSQVIECPSCGRIHLHDSGKVCSRCFKSLSTNDRVMT------AGSLI 1169 Query: 551 MPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHS 610 + L S ED + + ++ R + + + + + Sbjct: 1170 DKNYYALLASSEDSNLRVHA--EELTGQTTAQSQRQRHFREVFYENEKIIEDDSTSRDVN 1227 Query: 611 AQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQAT--------IPG 662 + +++L+ +TTME+GVD + + + Sbjct: 1228 PAVDA--------------IDLLSVTTTMEVGVDIGSLQAVLQANMPPERFNYQQRVGRA 1273 Query: 663 PEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQI 704 + + +T + F P + T + + Sbjct: 1274 GRKRQPFSVALTYSRGQTHDRIHFDHPKEMTGGTPPQPSLSV 1315 >UniRef50_C4Z4L4 Transcription-repair coupling factor (Superfamily II helicase) n=2 Tax=Clostridiales RepID=C4Z4L4_EUBE2 Length = 1206 Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 56/380 (14%), Positives = 100/380 (26%), Gaps = 16/380 (4%) Query: 453 AGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPD---GNRFYLPKEHMTFSLITDAWIC 509 +A + I K + G +L D + L + +T Sbjct: 731 LSSFRTSAQNKETIEELKKGMVDIVIGTHRLLSKDVVFKDLGLLIIDEEQRFGVTHKEKI 790 Query: 510 PVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLA 569 +D TP +P + + V I D A Sbjct: 791 KKLKNNVDVLTLSATP-IPRTLHMSLAGIRDMSVLEEPPVDRVPIQTFVTEHNDEMIREA 849 Query: 570 KARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQ 629 R+ + + + + E A Q + L+ F NG+ Sbjct: 850 ITRELARNGQVYYVYNRVRSIDEAAAHIQELVPDANVAYAHGQMAKRELEKIMCDFVNGE 909 Query: 630 LNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILP 689 ++VL +T +E G+D T+ + L V RS L Sbjct: 910 IDVLVSTTIIETGMDISNCNTMIIEDADRFGLSQLYQLR-GRVGRSSRTAYAFLLYRRDK 968 Query: 690 AKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYL 749 A +R+ I+ S F D+ + + V Y D Y Sbjct: 969 VLTEVAEKRLSVIREFADFG---SGFKIAMKDLEIRGAGNVLGNSQHGHMAAVGY-DLY- 1023 Query: 750 QNPVALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWF 809 +L + LK + T + D P ++ + ++ A Sbjct: 1024 -----CKMLNQAVNNLKGIKNEYEFETTIDVDVDAYIPATYIKSEYQKLDIYKRIAALEN 1078 Query: 810 AAALGRPVELTVFDSPRDIP 829 L + + D +P Sbjct: 1079 MDELSDMRD-ELSDRYGSVP 1097 >UniRef50_A5N4J1 Mfd n=34 Tax=Clostridium RepID=A5N4J1_CLOK5 Length = 1173 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 56/374 (14%), Positives = 106/374 (28%), Gaps = 16/374 (4%) Query: 459 NAATIDIINTWLKEAWAQLTGPLAVLKPD---GNRFYLPKEHMTFSLITDAWICPVTNKI 515 A I L G +L+ D + L + ++ K Sbjct: 716 AAQQKATIKAVKIGDVDVLIGTHRILQKDVQFKDLGLLIIDEEQRFGVSHKEKIKQIRKN 775 Query: 516 LDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWV 575 +D TP +P + + + I D A R+ Sbjct: 776 VDVLTLSATP-IPRTLHMSLVGVRDISVIETPPDERYPIQTYVVEYNDQLIRDAVLRELS 834 Query: 576 SHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNC 635 + ++ + + + A Q L+ F + ++L Sbjct: 835 RGGQVYFVYNRVENIKEMASYIAKLIPEGKVAVAHGQMQERELEGIIMDFMQNKYDILVS 894 Query: 636 STTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNA 695 +T +E G+D V T+ + L V R+ L+ A Sbjct: 895 TTIIETGMDIQNVNTMVIYDADKMGLSQLYQLR-GRVGRTNRIAYCYLSYRKDKVLKEVA 953 Query: 696 VERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVAL 755 +R+K I+ +L S F D+ + + V Y D Y Sbjct: 954 EKRLKVIKEFTELG---SGFKIALKDLEIRGAGNMMGSSQHGHMAAVGY-DLY------C 1003 Query: 756 ALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGR 815 +L ++ +K ++ T L D P N ++ I ++ A + Sbjct: 1004 RMLEDSIKLIKGEIDKEPVETTVELKVDAYIPDNYIENEVQKIEVYKKIAAISSYEDM-L 1062 Query: 816 PVELTVFDSPRDIP 829 ++ + D DIP Sbjct: 1063 DIKEELEDRFYDIP 1076 >UniRef50_C4DT42 Transcription-repair coupling factor Mfd n=29 Tax=Bacteria RepID=C4DT42_9ACTO Length = 1356 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 53/317 (16%), Positives = 93/317 (29%), Gaps = 13/317 (4%) Query: 513 NKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKAR 572 +D TP +P + + + T + ED G A R Sbjct: 949 RAHVDVLAMSATP-IPRTLEMAITGIREMSTITTPPEERHPVLTFVGGYEDKQVGAAIRR 1007 Query: 573 DWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNV 632 + + + R+ E R + RL+ + F NG+ +V Sbjct: 1008 ELLRDGQVFYLHNRVESIEKAATRLREIVPEARVVVAHGKMGENRLEQIMQDFWNGEFDV 1067 Query: 633 LNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKA 692 L +T +E G+D TL H V R Sbjct: 1068 LVSTTIIESGIDIPNANTLIVERADLLGLSQL-HQIRGRVGRGRERAYAYFMYPPEKPLT 1126 Query: 693 TNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNP 752 A ER+ + H +L + D+ + I GV + D Y++ Sbjct: 1127 EQAHERLATVAQHTELG---AGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGF-DLYVR-- 1180 Query: 753 VALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAA 812 ++G +R K + L D P + + + + ++ A+ A Sbjct: 1181 ----MVGDAVRTFKGAKEEILTEVKIDLPVDAHIPYDYIPVERLRLEMYRKLAEVRDDAE 1236 Query: 813 LGRPVELTVFDSPRDIP 829 L V + D D+P Sbjct: 1237 LD-EVRTEMADRYGDLP 1252 >UniRef50_A8MK41 Transcription-repair coupling factor n=15 Tax=Clostridia RepID=A8MK41_ALKOO Length = 1174 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 55/341 (16%), Positives = 103/341 (30%), Gaps = 19/341 (5%) Query: 513 NKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKAR 572 K +D TP +P + + + + + A +R Sbjct: 771 KKSIDVLTLTATP-IPRTLHMSMIGIRDMSVIEDPPEERFPVQTYVLGYSESMVVDAISR 829 Query: 573 DWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNV 632 + + + + + E R A Q S L+ + NG+ ++ Sbjct: 830 ELARGGQVYYVYNRVQGIHQVANNLKELVPQGRVAVAHGQMSERELEKIMLEYMNGEYDI 889 Query: 633 LNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKA 692 L +T +E G+D V T+ + + L V RS L + Sbjct: 890 LVSTTIIETGMDISNVNTIIIQDADKLGLSQLYQLR-GRVGRSYRQGYAYLMYEKDKILS 948 Query: 693 TNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNP 752 A +R+K I+ + S F D+ + + + Y D Y+ Sbjct: 949 EVAEKRLKAIKEFTEFG---SGFKIAMRDLEIRGAGNLLGGEQHGHMAAIGY-DLYV--- 1001 Query: 753 VALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAA 812 LL + ++ + T+ E T L + + I ++ A Sbjct: 1002 ---KLLEETVGEMRGEYTEKFEDTTIELNVNAYISEKYIGNPSHKIEIYKKIASIRNKED 1058 Query: 813 LGRPVELTVFDSPRDIP-HHRKLTV-----TFEDGQVLKIR 847 + R VE + D DIP R L + + G + Sbjct: 1059 MYR-VEEEIEDRFGDIPLSARNLLLISYIKSLAKGLKVTAI 1098 >UniRef50_Q881M9 Helicase domain protein n=1 Tax=Pseudomonas syringae pv. tomato RepID=Q881M9_PSESM Length = 459 Score = 137 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 45/152 (29%), Positives = 78/152 (51%), Gaps = 12/152 (7%) Query: 563 DYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYE 622 D +E + AR W++ +P + LR E +W+D++DR++EG Y+RTAEHSAQQ +L+SYE Sbjct: 2 DASEKILNARAWLNSEPKVIGLRDEGLWSDLHDRIIEGASYFRTAEHSAQQPKAKLKSYE 61 Query: 623 KMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHL----------NDELV 672 F++G +N+L+CSTTMEMG+D + +A + + + Sbjct: 62 TQFRSGHINLLSCSTTMEMGIDISGITAVAMNNVPPQT--ANYLQRAGRAGRRGEGRAVA 119 Query: 673 VRSLGYKTVELNEFILPAKATNAVERVKDIQI 704 + + + F P + + + + Sbjct: 120 LTICRKTPHDQHVFAKPRWPFDTNMIIPAVSL 151 >UniRef50_Q12A09 Transcription-repair coupling factor n=2 Tax=Burkholderiales RepID=Q12A09_POLSJ Length = 1201 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 46/283 (16%), Positives = 79/283 (27%), Gaps = 12/283 (4%) Query: 513 NKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKAR 572 +D TP +P + L I RS+ + A R Sbjct: 795 RAEVDVLTLTATP-IPRTLGMALEGLRDLSVIATAPQRRLAIKTFVRSENNGVIREAVLR 853 Query: 573 DWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNV 632 + + + +++ E R A Q L+ K F + N+ Sbjct: 854 ELKRGGQVYFLHNEVETIQNRREKLEEILPEARIAVAHGQMPERELERVMKDFVAQRYNL 913 Query: 633 LNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKA 692 L CST +E G+D T+ H V RS L + Sbjct: 914 LLCSTIIETGIDVPSANTIVMSRADKFGLAQL-HQLRGRVGRSHHQAYAYLMVPDIEGLT 972 Query: 693 TNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNP 752 A +R++ IQ ++L S F D+ E + + V + Sbjct: 973 KQASQRLEAIQQMEELG---SGFYLAMHDLEIRGTGEVLGESQSGNMLEVGFQ------- 1022 Query: 753 VALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDW 795 + +L + LK L + +D+ Sbjct: 1023 LYNEMLSEAVASLKAGREPDLLSPLSVTTEINLHAPALLPNDY 1065 >UniRef50_UPI000050FC02 helicase superfamily protein n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050FC02 Length = 2230 Score = 136 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 109/847 (12%), Positives = 210/847 (24%), Gaps = 119/847 (14%) Query: 16 YEVAFCNDCNE-----------PHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHDATEE 64 + +C +C L A D + + G F E D + Sbjct: 526 FPAIYCRNCGRNGWGIVKSAVGDQLAAPDADKDIRRESASGNSRFRALISAGGEADRYDL 585 Query: 65 KVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIP------------LII 112 + L + T R+ T I +++ Sbjct: 586 SGGDPDELHENLAAFNVRERDF-ITPGRIYG-TPTIPDDLAEALRAGDILPVLVFQGTDA 643 Query: 113 NDIEQVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPD 172 ++ + CG R ++ + V T+L G Sbjct: 644 DEKSKGEYCPACGERDSIR-------------FLGSAVATLLSVSLSTLF-------GDQ 683 Query: 173 SLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANAD 232 L ++ + FTDS Q A A ++ + LR + E + + Sbjct: 684 HLDDYEKKSLVFTDSVQDAAHRAGFVESRSHVLTLRNVIAEAVGD------------VST 731 Query: 233 LEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTE 292 LE +A + + R +P + + ++ + T KAA ++ R + Sbjct: 732 LEAVAGQIISQAGEDSGKRYRALPPELSTDRFADVRVWWQHPQRTNRKAAEKVMKRLSFD 791 Query: 293 MVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGL 352 E ++ + E ++ + + E + + GL Sbjct: 792 AALEFGLQSRYGRTLSTTGTVYAEVALPETEELDAIA-VEVLDEAGALNGMLDLPDGGGL 850 Query: 353 VQVGYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRF 412 G + + + + +G W + + + G Sbjct: 851 TSAGAR-VAWVRAVVERLRTQGAIHHPW------LGKYVASGGYRIWIWGKRNRDQGMPA 903 Query: 413 SSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKE 472 P ++ G S L ++ G+ AA I Sbjct: 904 FPASRNAPAFAVTGMSRK------SIGGRSGSLFDMVESNQGWYARYAARTFGITANHGA 957 Query: 473 AWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTP---YLPT 529 +L L L G +P K D G+ P L Sbjct: 958 GLTKLL--LQRLAAAGILRAVPV------------------KDSDATAYGIEPFRIRLER 997 Query: 530 HISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENV 589 + V V R+ D + R N Sbjct: 998 AFDDPAEKSRNLECTVCGTV----FPAASRTLNDLDGANCLLVGCSGTLQVGTVAR--NF 1051 Query: 590 WTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQ-----LNVLNCSTTMEMGVD 644 + D+ EHS+ ++ +++E FK G NVL + T+EMG+D Sbjct: 1052 YRDLY--TSAQMTRIVAREHSSMLDTDERKAFEDGFKRGSDDPSAPNVLVATPTLEMGID 1109 Query: 645 TDRVMTLASRSQQATIPG--PEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDI 702 + T+ S T+ L +L V L + Sbjct: 1110 IGDLSTVMLGSLPETVASYVQRVGRAGRLTGNALNLAIVGSTNTELRTIHDPLSIINGSV 1169 Query: 703 QIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRY----------LQNP 752 Q + +++ L + +A + V + L + Sbjct: 1170 QPPATYLDAVEIIKRQYLAFLMDRLAQAAGAAQKRGVGDVFGAELGKSEFLNAVTDLNDH 1229 Query: 753 VALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAA 812 +L L + +D W + D++ + Sbjct: 1230 SHTEMLAEFLAGFGDLIDQAKTELTAWASVAEDGSSGLKTAVWRAHQDYRHEVESLQHQL 1289 Query: 813 LGRPVEL 819 + L Sbjct: 1290 AEINLAL 1296 >UniRef50_A6DRD9 Putative RNA helicase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DRD9_9BACT Length = 2096 Score = 136 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 91/807 (11%), Positives = 203/807 (25%), Gaps = 141/807 (17%) Query: 20 FCNDCNEP-HLLARDKKGKLVQWENKGGDEFSLQDEVPVEHDATEEKVEKENSFQPPLII 78 FC DC L + + E +QD + + + ++ Sbjct: 486 FCRDCGASGWLGIKHDNKERF--------EQDVQDVYTKFFANHKHIYFANRTSEFSMLD 537 Query: 79 AAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCS-------ASGCGYRGMSG 131 A E T ++ + + D I ++ C R Sbjct: 538 AVSVGYEPDDTFKKYVSNSSLLLHSQEDETRTDITAFRKLNRDGYNEHICPECNTRNTVS 597 Query: 132 KQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQGT 191 R A L + + E + R+++ FT+S Q Sbjct: 598 IIGTRIATLSSITVSQVLATDLDEQ------------------DEQQRKVLAFTNSVQDA 639 Query: 192 ARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLE----KLAARAKQAREQA 247 A A ++ R R S+ ++++ +T + + Sbjct: 640 AHQAGFVEARNYRFTFRSSLQQVINNLDKTVSLKELSDEFRTHWKESADGTGKSPLDAYY 699 Query: 248 EEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERADIRGPV 307 + ++ + ++ +W E+ +E A I + Sbjct: 700 YRFYPTDYIGKSS-PEDYKDK-----NDYESHFIKEFDERVSW-ELYSEFAYNAQIGRTL 752 Query: 308 LQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGLEKIHKSP 367 + + + L E P + E G ++ L Sbjct: 753 EKTSSSAVHFALEDLESVWDLME----------PWLKEN-EPSGTIEKKLFLLFVELLLH 801 Query: 368 LHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVRNPESKDPED 427 ++ DFL D ++ + + D ++++ F + + Sbjct: 802 RVRIRGAVSH----DFLSKFRDGDLKLWDLNWMKDG-RHFLNKNFGPRTRIPKLLTFKSE 856 Query: 428 NQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPD 487 ++ I + + + + ++ D++N + ++ L + K + Sbjct: 857 SR-----GILDSTFAKKSNWFHQYYKKSFIMASSHQDMVNEFYEQLILSLEKSGIMDKSN 911 Query: 488 GNR---FYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTF 544 F L + + + C ++ T Sbjct: 912 CEEKLNFGLNPAKVFVNNKAKTYECSTCAHVVIT-------------------------- 945 Query: 545 VAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYY 604 + D + G + +N + + +R E Sbjct: 946 -------------SQEDHDLSNGKCLVYRCTGVYQINESAVQDNYYQLVYNR--ERSPRI 990 Query: 605 RTAEHSAQQSSERLQSYEKMFKNGQ----LNVLNCSTTMEMGVDTDRVMTLASRSQQATI 660 A+H+ + + E FK N + ++T+EMG+D + T + S Sbjct: 991 YAADHTGLLERKAREDLEIDFKTRPNFNSKNAMVATSTLEMGIDIGSLNTAINNSIPPMP 1050 Query: 661 PGPEWHLNDELVVRS---------LGYKTVELNEFILPAKATNAVERVK--DIQIHKQLN 709 + RS + +L + P I+ + L Sbjct: 1051 --SNFLQRVGRAGRSTGSALIVNFAKSQAHDLFYYAEPLDMMAGEVSTPGCYIEAKEILK 1108 Query: 710 GPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPV-----------ALALL 758 F D + + + +N + TD + +AL Sbjct: 1109 R---HFFAYCIDSWAKEDPKNHHIPSNINYLKIETTDLFAPEFFINKIINFVKINEMALF 1165 Query: 759 GSILRPLKTKLTDGAEVTLDTLFKDKD 785 S K + D L + Sbjct: 1166 ESFKAGYKNDVEDSVFQHLRYELNNDA 1192 >UniRef50_A6BZ20 Putative RNA helicase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6BZ20_9PLAN Length = 2120 Score = 136 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 93/757 (12%), Positives = 180/757 (23%), Gaps = 96/757 (12%) Query: 14 PVYEVAFCNDCNEPHLLARDKKGKLVQWENKGGDEFSLQDEV----PVEHDATEEKVEKE 69 P V C++C E + Q KG F L E + Sbjct: 438 PSLPVFHCSECGESGWVGLADPNTETQIGAKGVSGFQLDAEPSKIYRGWFGFKGMRNPNI 497 Query: 70 NSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQVCSASGCGYRGM 129 P + G + + G P + + Sbjct: 498 IVISPDREGLSDAPQPEGEETPAENLSQQEFGFKQWYMCPKSLVLRLEDGPCPLTNDPKR 557 Query: 130 SGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLP-------------- 175 + V + C + S +G +G S Sbjct: 558 FKVKVNHETRQDNKQ-----VTVGDQGCPNCQSKDGVFFIGSQSATLSSVAIDELFGSVL 612 Query: 176 GRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEK 235 +L+ FTDS Q + A + R ++ ++ + + A L Sbjct: 613 NNDPKLLAFTDSVQDASHRAGFFSSRTYQFTFRTALQHVIDDAGDSGIRLSDAGPALL-- 670 Query: 236 LAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVN 295 ++++ S + L E + + R ++ Sbjct: 671 ----DWWSQQRPGWRGSIREAMASLLPPDLHEYSDFVNYRDNASASDPPKRLRDEIDL-R 725 Query: 296 ELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQV 355 E G + + ++P + + E L R P +L Sbjct: 726 LTWEVTSEFGLMQTHGRTMEPAGSSCIAWDDQRIESTLKNLRERIPGIDPALADL----- 780 Query: 356 GYQGLEKIHKSPLHWQEKGLTLDDWR-DFLKVTLDHYVRESNFTQLDDELKNWIGSRFSS 414 K+ W L R LD + + + + + + Sbjct: 781 -------SDKAIKLWIYGFLHRARIRGAIAHPFLDSFAKNNFWGKYPFGRTLPGRETYPG 833 Query: 415 KFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAW 474 P + + + +L+ NA +++ Sbjct: 834 DGHYKPHLMVTQSQRTHDFVLAPTKKGGRPPWQLVWARRSLGKPNADETSLLD------- 886 Query: 475 AQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFE 534 L L F M + + IL + Sbjct: 887 --LIAALLTCGTQAGLF----TRMHQDGTKNFYAVSAHAAILTSD-------------RV 927 Query: 535 HLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDIN 594 +L ++ V + E WK S E Y++ A S + D Sbjct: 928 NLICSESGKAVIRPAAEAEYWKDAPSWEYYSQKGRYAEGDYSPRQE--------YYQDRY 979 Query: 595 DRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKN----GQLNVLNCSTTMEMGVDTDRVMT 650 + +EH+ ++E + E F NVL C++T+EMG+D + + Sbjct: 980 RKGALR--RVVASEHTGLLATEDREKLELDFSRTKHTDDPNVLTCTSTLEMGIDIGDLSS 1037 Query: 651 LASRSQQATIPGPEWHLNDELVVRSLG---------YKTVELNEFILPAKATNAVERVKD 701 S + + RS G + +L + P++ Sbjct: 1038 TMLCSIPPSTAS--YLQRIGRAGRSTGTALIVSVVNQRPHDLFFYGRPSEMLRGKVDPPG 1095 Query: 702 IQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTR 738 + F E L + + Sbjct: 1096 CWLDASAVLVRQYLAYGFDS--ATKIGELTELPKSGK 1130 >UniRef50_B1XUT3 Transcription-repair coupling factor n=24 Tax=Betaproteobacteria RepID=B1XUT3_POLNS Length = 1181 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 70/481 (14%), Positives = 140/481 (29%), Gaps = 38/481 (7%) Query: 412 FSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLK 471 + + + ++ WP + K + + A I I L Sbjct: 678 LAPTTLLAEQHVATWKDRFADWPVRIVELSRFKTTKEINVALAAIAKGEADIIIGTHKLL 737 Query: 472 EAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHI 531 Q V+ + +RF + ++ +L +D TP +P + Sbjct: 738 SKETQFANLGLVIADEEHRFGVRQKDALKAL----------RAEVDILTLTATP-IPRTL 786 Query: 532 SFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWT 591 L ++ I R + D A R+ + Sbjct: 787 GMAMEGLREFSIIATAPQKRLAIKTFVRREGDDVIREAVLREIKRGGQVYFLHNEVETIQ 846 Query: 592 DINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTL 651 + + E R + Q L+S + F + N+L C+T +E G+D T+ Sbjct: 847 NRKHALQELIPEARISVAHGQMHERELESVMREFVTQRTNILLCTTIIETGIDVPTANTI 906 Query: 652 ASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGP 711 H V RS L A + A R+ IQ ++L Sbjct: 907 IMHRADKFGLAQL-HQLRGRVGRSHHRAYAYLLVPNSEALSKQAQLRLNAIQAMEELG-- 963 Query: 712 LSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKTKLTD 771 S F D+ E + I + + + +L ++ L++ Sbjct: 964 -SGFYLAMHDLEIRGAGEVLGDKQSGEIHEIGFQ-------LYTEMLNRAVKSLRSGKES 1015 Query: 772 GA------EVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVELTVFDSP 825 ++ L P + ++ ++ FA + L + + D Sbjct: 1016 DLLSPLQATTDVN-LGVPALLPEDYCPDVHERLSLYKRFAGTHDFSEL-MGLREELVDRF 1073 Query: 826 RDIP-HHRKLTVTFEDGQVLKIRFDQ-GMGYWRINFSSQWHYFDFRDDVSFQLVKMAQAC 883 D+P R + ++R + G G +I+ + F + +K+ Q Sbjct: 1074 GDLPDQARSFY------ETHRLRLEMAGFGIKKIDATPVSIQIQFIPNPPIDPMKIIQLI 1127 Query: 884 K 884 + Sbjct: 1128 Q 1128 >UniRef50_D1CBU7 Transcription-repair coupling factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CBU7_THET1 Length = 1150 Score = 135 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 45/329 (13%), Positives = 89/329 (27%), Gaps = 14/329 (4%) Query: 513 NKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKAR 572 +D TP +P + + ++ + D + R Sbjct: 747 RTQVDVLTLTATP-IPRTLQMALSGVRDMSVIETAPEDRLPVYTYIVPKNDSIIRDSIIR 805 Query: 573 DWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNV 632 + + + ++ E R Q ++L+ F + +V Sbjct: 806 ELERGGQVFYVHNRVQDIYKVAHKLQEMVPEARITVAHGQMPEQQLEQVMLDFMHHHYDV 865 Query: 633 LNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKA 692 L C+T +E G+D TL + L V RS L Sbjct: 866 LVCTTIIESGLDIPNANTLIVDDATHMGLAQLYQLR-GRVGRSSNRAYAYLMYRPDARMT 924 Query: 693 TNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNP 752 +A +R++ I QL + F D+ + + + Sbjct: 925 EDAQKRLEAISEATQLG---AGFRVAMKDLEIRGAGNFLGPEQSGHVYAIGLE------- 974 Query: 753 VALALLGSILRPLKTKL-TDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAA 811 + ++ ++ L+T L P + I ++ A A Sbjct: 975 LYTQMIERAVQELRTGQPISEPPAVTIDLPIPALIPEHYVSDRDTRIRLYRRLASTSTAR 1034 Query: 812 ALGRPVELTVFDSPRDIPHHRKLTVTFED 840 L R +E + D +P + D Sbjct: 1035 EL-RSMESEMRDRFGPLPEEAINLIKLID 1062 >UniRef50_P64327 Transcription-repair-coupling factor n=40 Tax=Corynebacterineae RepID=MFD_MYCBO Length = 1234 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 59/400 (14%), Positives = 117/400 (29%), Gaps = 30/400 (7%) Query: 451 LGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPD----GNRFYLPKEHMTFSLITDA 506 G T A + +I+ + + G +L+ + E F + Sbjct: 729 KGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKE 788 Query: 507 WICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAE 566 I + +D TP +P + + + T + + +D Sbjct: 789 HIKSL-RTHVDVLTMSATP-IPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQI 846 Query: 567 GLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFK 626 A R+ + + RV E R Q + L++ + F Sbjct: 847 AAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLETTVQRFW 906 Query: 627 NGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEF 686 N + ++L C+T +E G+D TL H V RS Sbjct: 907 NREHDILVCTTIVETGLDISNANTLIVERADTFGLSQL-HQLRGRVGRSRERGYAYFLYP 965 Query: 687 ILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTD 746 A +R+ I + +L + D+ + + + GV + D Sbjct: 966 PQVPLTETAYDRLATIAQNNELG---AGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF-D 1021 Query: 747 RYLQNPVALALLGSILRPLKT-----------KLTDGAEVTLDTLFKDKDRPGNRPFHDW 795 Y++ L+G L + + + + L D P + D Sbjct: 1022 LYVR------LVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDR 1075 Query: 796 MSIADFQDFADQWFAAALGRPVELTVFDSPRDIPH-HRKL 834 + + ++ A + V+ + D +P R+L Sbjct: 1076 LRLEGYRRLAAASSDREVAAVVD-ELTDRYGALPEPARRL 1114 >UniRef50_B9KYW6 Transcription-repair coupling factor n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KYW6_THERP Length = 1165 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 60/385 (15%), Positives = 104/385 (27%), Gaps = 21/385 (5%) Query: 451 LGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPD----GNRFYLPKEHMTFSLITDA 506 II + G +L+ D + E F + Sbjct: 694 EMLSRLRSKREQRAIIEGLRAGTVDIVIGTHRLLQRDVAFKRLGLVIIDEEHRFGVAHKE 753 Query: 507 WICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAE 566 +D TP +P + + V + D Sbjct: 754 HF-KRLRTNVDVLTMTATP-IPRTLYLALSGVRDLSVIATPPVDRTPVRTFVTPARDSVI 811 Query: 567 GLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFK 626 A R+ + + D R+ R A Q + L+ F Sbjct: 812 REAILREIARGGQVYVVHNRVHSILDFAQRLRGLVPEARFAVAHGQMPEQELERIIVDFI 871 Query: 627 NGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEF 686 + +VL C+ +E GVD V T+ Q + L V RS L Sbjct: 872 ERKYDVLICTAIIESGVDIPSVNTIIIDQAQQLGLTQLYQLR-GRVGRSHQRAYAYLLYD 930 Query: 687 ILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTD 746 + A R++ IQ +L + D+ + I V Sbjct: 931 DRRPLSAEARARLEAIQEATELG---AGLQIALRDLEIRGAGNILGPEQSGHIAAVGLE- 986 Query: 747 RYLQNPVALALLGSILRPLKTK--LTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDF 804 + LL ++ L+ + + VT+D L + P + + + +Q F Sbjct: 987 ------LYTQLLARAVQELREGRPIDEAPSVTID-LPIEATIPSEYCGDEAIRMRLYQRF 1039 Query: 805 ADQWFAAALGRPVELTVFDSPRDIP 829 A+ L V + D +P Sbjct: 1040 AEIRTDEQLEDLVS-EIRDRFGPLP 1063 >UniRef50_B0TBA7 Transcription-repair coupling factor n=9 Tax=Firmicutes RepID=B0TBA7_HELMI Length = 1247 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 54/369 (14%), Positives = 97/369 (26%), Gaps = 23/369 (6%) Query: 516 LDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWV 575 +D TP +P + + L + A R+ Sbjct: 784 VDVLTLSATP-IPRTLHMSLVGLRDMSIIETPPEDRYPVQTYVVEYNPELIREAVRRELN 842 Query: 576 SHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNC 635 + I + R + ++L+ F G+ ++L C Sbjct: 843 RGGQVYYVRNRIEDLDRIARDLGALVPDARIVVGHGKMREDQLEQVMLDFLEGEYDILVC 902 Query: 636 STTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNA 695 +T +E G+D V TL + L V RS A Sbjct: 903 TTIIETGLDIPNVNTLIVDGADLMGLSQLYQLR-GRVGRSNRLAYAFFTYRKDKVLTEVA 961 Query: 696 VERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVAL 755 +R+ I+ +L S F D+ + ++ V + D Y Sbjct: 962 EKRLHAIREFTELG---SGFKIAMRDLEIRGVGNLLGPEQHGQMASVGF-DLY------C 1011 Query: 756 ALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGR 815 LL ++ LK + A T + D P + ++ + Sbjct: 1012 RLLEEAIQELKGAKPEEAPETFVDIRVDAFIPDGYMADSLSKVQFYKRLLAARTVDQVE- 1070 Query: 816 PVELTVFDSPRDIPHHRKLTVTFED----GQVLKIRFDQGMGYWRINFSSQWHYFDFRDD 871 +E + D D P + V+ GQ G+ + F Sbjct: 1071 ALEEEMEDRFGDPPEPVENLVSLSRIKAYGQQA------GVSAVQQEKEELRIRFFPHAK 1124 Query: 872 VSFQLVKMA 880 V + V Sbjct: 1125 VEAKAVSAL 1133 >UniRef50_C1XVJ6 Helicase family protein with metal-binding cysteine cluster n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XVJ6_9DEIN Length = 1838 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 87/765 (11%), Positives = 181/765 (23%), Gaps = 107/765 (13%) Query: 95 RQTRRIGVINNDSIPLIINDIEQV-CSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTV 153 T + ++ + CG + + +A L GP ++ V Sbjct: 506 TATLDMQSLSLKGERFLDGKPAYPLVFCRNCGQEYLVAR--LDKAFLPGPSLLSPFDAQV 563 Query: 154 L-----------EYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQG------TA---- 192 E + + G+ +L RL FT R A Sbjct: 564 RYLRPGFWDMEKEPLPEDWLENGRVKPAKQALLPSNLRLDPFTGQRDEGKGVPVAAVPYP 623 Query: 193 -RMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARAKQAREQAEEYR 251 Q R RG + L+ + D+ L+ A ++ + Sbjct: 624 FSFCPTCQVAHTR---RGGEIRKLAAFGLVG----RSTATDILTLSTLANLPNQERKMIV 676 Query: 252 SWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERADIRGPVLQYN 311 A+ + L + + + + + E P + + Sbjct: 677 FTDNRQDAEFQAGHFQDLFRKVLFRQTTLEILREGPIHLSVLGDRVFEAWKTSDPREELS 736 Query: 312 HYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGLEKIHKSPLHWQ 371 LS + +LE GL Y+ L+K+ + P W+ Sbjct: 737 ELYDIGAPEGQAFRRLLSLAAILEAARNTQPNLKNLEAAGLAHYTYRHLDKVGEDPRVWE 796 Query: 372 EKGLTLDDWRDFLKVTLDHYVRESN--FTQLDDELKNWIGSRFSSKFVRNPESKDPEDNQ 429 + RD+L+ LD R + + + + + + Sbjct: 797 GLEFAPEARRDYLQGLLDLMRRRGAIAHEFFNPWRFRFEIEEKLAAYPQEIFVEAVGSAV 856 Query: 430 NRRWPQIRNGNVSHRLAKLLMLGAGFKTV-----NAATIDIINTWLKEAWAQLTGPLAVL 484 + H + + LK L + Sbjct: 857 VLETRVPQTPRSGHTFRLVGERRPSLFESWTMGALDLAREGAQALLKRVVQALKEHRVLQ 916 Query: 485 KPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTF 544 + E L +A + T + + Y F Sbjct: 917 TASLPAWG-KGEVAGLVLNPNAILIKKTEGRYLICPR-----------------STYTGF 958 Query: 545 VAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYY 604 + PE + + R + + RV Sbjct: 959 LYHLYRSPEYPTQ-----------------------LLEEREVHPFYQALYRVRVFPVPL 995 Query: 605 RTAEHSAQQSSERLQSYEKMFK--NGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPG 662 HS Q E + E+ F+ L+ L + T+EMG+D + ++ R+ + Sbjct: 996 EARAHSGQVPGEERRKLEERFRDPKDPLSALVATPTLEMGIDIGALSSVFLRNIPPSPAS 1055 Query: 663 PEWHLNDELVVRSLGYKT---------VELNEFILPAKATNAVERVKDIQIHKQLNGPLS 713 + R + + P K + + Sbjct: 1056 --YAQRSGRAGRKGQPALIQAFSGAFGHDQYFYRYPEKMVRGSIQAPRFLLDN-----PR 1108 Query: 714 QFGQRFWDVLFNDHEEAQSLMNNTRI-TGVHYTDRYLQNPVALAL---LGSILRPLKTKL 769 ++ + ++ V Y D+ P+ L LR +T + Sbjct: 1109 LIRAHIRALVLEVLAQKAGFSLPAKVGQAVDYEDQAQFYPLRAVFRQGLAEELRACQTDI 1168 Query: 770 TDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALG 814 + +++ + F ++ + Sbjct: 1169 EAAVQEA-----FNQEIKRYPWLSPATISQTVRGFLEELDQEMVP 1208 >UniRef50_D1C4G9 Transcription-repair coupling factor n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C4G9_SPHTD Length = 1173 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 54/384 (14%), Positives = 105/384 (27%), Gaps = 19/384 (4%) Query: 451 LGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPD----GNRFYLPKEHMTFSLITDA 506 I+ + + G +L+ D + E F + Sbjct: 709 EMLSRLRSRKEQTQILQQLERGEIDVIIGTHRLLQRDVRFKKLGLVIIDEEQRFGVAHKE 768 Query: 507 WICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAE 566 +D TP +P + + I + D Sbjct: 769 HF-KRLRTNVDVLTMTATP-IPRTLYMALSGIRDLSVITTPPQERTPIRTFVTASNDSLI 826 Query: 567 GLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFK 626 A R+ + + +R+ + R Q + L+ F Sbjct: 827 REAILREISRGGQVYFVHNRVQSIYHVLERLEKLVPEARFGVGHGQMDEDELEQLMLAFM 886 Query: 627 NGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEF 686 + +VL C+T +E GVD V T+ + L V RS + Sbjct: 887 QHEFDVLVCTTIIESGVDIPNVNTIIIDRAHQLGLTQLYQLR-GRVGRSHHRAYAYVLYD 945 Query: 687 ILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTD 746 + AV R++ IQ +L + F D+ + + V Sbjct: 946 ANVPLSAEAVARLEAIQEATELG---AGFQIALRDLEIRGAGNVLGPEQSGHVAAVGLD- 1001 Query: 747 RYLQNPVALALLGSILRPLKTKL-TDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFA 805 + +L + + +K + E L + P + + + I ++ A Sbjct: 1002 ------LYTRMLATAVEEIKQGRPIEEPEAVTVDLPIEATIPESYVGDEGVRIDLYRRLA 1055 Query: 806 DQWFAAALGRPVELTVFDSPRDIP 829 A L R ++ + D +P Sbjct: 1056 AVRTYAEL-RDLQEEMIDRFGPMP 1078 >UniRef50_Q6ARL4 Related to transcription-repair coupling factor n=2 Tax=Desulfobulbaceae RepID=Q6ARL4_DESPS Length = 1184 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 55/382 (14%), Positives = 109/382 (28%), Gaps = 12/382 (3%) Query: 453 AGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPD---GNRFYLPKEHMTFSLITDAWIC 509 +I+ + G +L D + L + + Sbjct: 708 LNRFRTAKEQREIVKDLAAGKIDIVIGTHRLLSKDVQFKDLGLLIIDEEHRFGVAHKERL 767 Query: 510 PVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLA 569 +D TP +P + L++ + + +D A Sbjct: 768 RKMRAEVDILTLTATP-IPRTLQMSLLSIRDLSVISSPPEQRRPVKTFVAEDDDLVIKEA 826 Query: 570 KARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQ 629 +R+ I +++ + R A Q ++ L++ F N + Sbjct: 827 ISRELRRKGQTFFVHNRVKSIYQIANKIEKLVPDARIAVAHGQMDTKELENIMVSFVNKE 886 Query: 630 LNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILP 689 ++VL +T +E G+D T+ + L V RS L L Sbjct: 887 VDVLVATTIIESGLDIPSANTMIINRADNLGLAEMYQLR-GRVGRSSTQSFAYLLVPSLD 945 Query: 690 AKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYL 749 + + ++ ER++ + +L G F D+ + + I + Y D YL Sbjct: 946 SISKDSRERLRALMECNELGG---GFKLAMNDLQIRGGGNLLGISQSGNIAAIGY-DLYL 1001 Query: 750 Q--NPVALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQ 807 L L + + D + ++ L P N ++ A Sbjct: 1002 DLLQKTVADLKAQKLSQEEQGIYDDLDPEIN-LQHSAFIPSNYITDIDQRYIVYRRIAAM 1060 Query: 808 WFAAALGRPVELTVFDSPRDIP 829 A + + D IP Sbjct: 1061 SRGMADFADIRDELSDRYGRIP 1082 >UniRef50_B5WD80 DEAD/DEAH box helicase domain protein n=1 Tax=Burkholderia sp. H160 RepID=B5WD80_9BURK Length = 2139 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 88/700 (12%), Positives = 167/700 (23%), Gaps = 119/700 (17%) Query: 59 HDATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSIPLIINDIEQV 118 + ++ + + S R+ + + Sbjct: 504 DEIYNTWFDRRPEATRLYAVQSIGRSHVEGVPARVCVSCGTLQQSRD------------- 550 Query: 119 CSASGCGYRG----MSGKQPFRRALLGGPFYVTNIV--------PTVLEYCQDFTSDEGK 166 + CGY+ + F + + +L ++ T Sbjct: 551 -ACVACGYQELLDVFRVTGKRTQMRGEAQFTLHDTTCPACGEDDKLLLLGARNATLGSQV 609 Query: 167 EGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTA 226 S+ ++LI F+DS Q A A + +R ++ + Q+ S + Sbjct: 610 VESSWASVFNDDKKLIAFSDSVQDAAHRAGFFGARTYMNNVRTALAHAMDELQQPVVSWS 669 Query: 227 PNANADLEKLAARAKQAREQAEEYRSWGM-PDQAKLSQAQAEQLEQAYQAATGGKAATIL 285 + ++ E S + P+ E + A + + Sbjct: 670 WFLDQVEKRFETEGSVLCMSPEMLVSEFIAPNMTWQRDWAVELPQHQRLPAESKLPSRVK 729 Query: 286 VSRTWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTN 345 W E K + G ++ L F Sbjct: 730 KRFLW----QAYSEMTYHSQRGRTLERIGKAVLAVPWGDVEPVA-ARLTSAFR------- 777 Query: 346 SLETQGLVQVGYQGLEKIHKSPLHWQEKGLTLDDWR-DFLKVTLDHYVRES--NFTQLDD 402 E GL + ++ W LT R + L Y + Sbjct: 778 --EQYGLHGLE-------VRTVARWLWGTLTHLRRRGAVMHPELATYAGDGKTYALSFLG 828 Query: 403 ELKNWIGSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAAT 462 W+ R R + + + R R A ++ Sbjct: 829 GRAEWM-PRMGEYTARPIFLTLGKQSGFDKLTGTRRATWYDRWAYVV-----LGRDTLLP 882 Query: 463 IDIINTWLKEAWAQLTGPLAVLKPD---GNRFYLPKEHMTFSLITDAWICPVTNKILDTA 519 I K+A L ++ G+ + L E +T L + A Sbjct: 883 NGIAQDLYKDALFALRDAGLLVMTSHHQGDTWALNPERLTLYL-----------DVSFIA 931 Query: 520 FKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDP 579 +G LP F + + LD + Y + A +W Sbjct: 932 TEGSKRRLPVPREFA--------------GHLIGMPCLDAPETTYEVLVPDAANWWVKRF 977 Query: 580 LIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQL-----NVLN 634 LR AEH+ + E FK+ N+L+ Sbjct: 978 SQGDLRRV-----------------IAAEHTGLLERTEREDLEGRFKSRHPKPWYENLLS 1020 Query: 635 CSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYK----------TVELN 684 + T+EMGVD + ++ S + R G +L Sbjct: 1021 ATPTLEMGVDIGDLSSVMLCSVPPNTAS--FLQRIGRAGRRDGNAMATTLADGNSPHDLY 1078 Query: 685 EFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLF 724 F + + + + F D + Sbjct: 1079 FFAETGEMLSGEVAPPGVFLGAAEVLRRQLFAFCMDDWVA 1118 >UniRef50_C9RA21 Transcription-repair coupling factor n=1 Tax=Ammonifex degensii KC4 RepID=C9RA21_AMMDK Length = 1123 Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 42/306 (13%), Positives = 79/306 (25%), Gaps = 17/306 (5%) Query: 513 NKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKAR 572 K +D TP +P + + L + ++ A R Sbjct: 729 RKEVDVLTLTATP-IPRTLYMSLVGLRDTSCLTTPPPDRLPVETYVVEEDPAIIREAIRR 787 Query: 573 DWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNV 632 + + ++ + V R A Q L+ F + + +V Sbjct: 788 ELARGGQVYFVYNRVAGIVEVANWVKHLVPEARVAYAHGQMPEAALERIMLDFIDHKYDV 847 Query: 633 LNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKA 692 L +T +E G+D V TL + + L V R+ Sbjct: 848 LVATTIVENGLDIGNVNTLIVKDADQLGLSQLYQLR-GRVGRTNRLAYAYFLYRRDKIIN 906 Query: 693 TNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNP 752 A R++ I+ L + F D+ + I V Sbjct: 907 EAAKARLRAIKDFTSLG---AGFKVAKRDLEIRGAGNLLGTEQHGHIQAVGLE------- 956 Query: 753 VALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAA 812 + LL ++ LK + + D++ + + A Sbjct: 957 LYCRLLQEAIKELKGEEVVPPVD-----PVIELTVSAYIPDDYVPFDQKLEIYQELSRAE 1011 Query: 813 LGRPVE 818 VE Sbjct: 1012 TPEEVE 1017 >UniRef50_C7MC76 Transcription-repair coupling factor Mfd n=9 Tax=Actinobacteridae RepID=C7MC76_BRAFD Length = 1211 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 39/294 (13%), Positives = 82/294 (27%), Gaps = 12/294 (4%) Query: 513 NKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKAR 572 +D TP +P + + + + +QED A R Sbjct: 789 RTNVDVLSMSATP-IPRTLEMAVTGIRELSILATPPEERHPVLTYVGAQEDKQVTAAIRR 847 Query: 573 DWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNV 632 + + + + + E R + + +L+ F +V Sbjct: 848 ELLREGQVFYIHNRVEDIDRVAAHLRELVPDARVQVAHGKMNEHQLERVLIDFWERDFDV 907 Query: 633 LNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKA 692 L C+T +E G+D TL + H V RS Sbjct: 908 LVCTTIVETGLDISNANTLIVENADRFGLSQL-HQLRGRVGRSSERAYAYFLYNATKPLT 966 Query: 693 TNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNP 752 A +R+ + + L + D+ + I GV + D Y++ Sbjct: 967 ELAHDRLTTLATNTDLG---AGMQVAMKDLEIRGAGNLLGGEQSGHIAGVGF-DLYVR-- 1020 Query: 753 VALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFAD 806 ++G + + + + L D P + + + + + + Sbjct: 1021 ----MVGEAVAAFRGEGRAPEKEIRVELPLDAHVPHDYIGSERLRLEAYSKLSA 1070 >UniRef50_UPI00016C571B transcription-repair coupling factor n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C571B Length = 1121 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 46/336 (13%), Positives = 95/336 (28%), Gaps = 13/336 (3%) Query: 513 NKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKAR 572 +D TP +P + L + + + +D A R Sbjct: 728 RATVDVLTMTATP-IPRTLHASLLGIREISNLETPPADRQPVETHITRWDDKQLRNAILR 786 Query: 573 DWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNV 632 + + ++ ++ + Q + L+ F + ++ Sbjct: 787 EMNRGGQVYFVHNRVQDIYEVATKIEILVPEAKVTVGHGQMDAHDLEKAMVRFVRKEADI 846 Query: 633 LNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKA 692 L +T +E G+D T+ H V RS L Sbjct: 847 LVATTIIESGLDIPNANTIFIDEADTYGLADL-HQLRGRVGRSKHRAYAYFIVNPLKLLN 905 Query: 693 TNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNP 752 A R+K I+ +L + F D+ + I + Y Sbjct: 906 PTAQRRLKAIEEFTELG---AGFKIAMRDLEIRGAGNILGGEQSGHIAAIGYE------- 955 Query: 753 VALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAA 812 + LL + +R LK + A + L P + + I ++ A A Sbjct: 956 LYCQLLENAVRALKHQPPKVAVDVVVDLPWPSYLPRDYVQGQKLRIEVYRRLARLRDPAK 1015 Query: 813 LGRPVELTVFDSPRDIPHHRKLTVTFEDGQVLKIRF 848 L + D + P + + + ++L +++ Sbjct: 1016 LA-DFRTELRDRYGEPPEPVEWLLRTTEVRLLCVKW 1050 >UniRef50_P45128 Transcription-repair-coupling factor n=72 Tax=cellular organisms RepID=MFD_HAEIN Length = 1146 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 53/349 (15%), Positives = 105/349 (30%), Gaps = 23/349 (6%) Query: 513 NKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKAR 572 +D TP +P ++ + I R +D A R Sbjct: 748 RANIDILTLTATP-IPRTLNMAMNGIRDLSIISTPPARRLSIKTFVRQNDDLVVREAILR 806 Query: 573 DWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNV 632 + + + + +++ R Q L+ F + + NV Sbjct: 807 EILRGGQVYYLHNDVASIENTAEKLTALVPEARVIVGHGQMRERELERVMSDFYHQRYNV 866 Query: 633 LNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKA 692 L CST +E G+D T+ H V RS L Sbjct: 867 LVCSTIIETGIDVPTANTIIIERADHFGLAQL-HQLRGRVGRSHHQAYAYLLTPPPKMMT 925 Query: 693 TNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNP 752 +A R+ + + L+ + F D+ E + +I + ++ Sbjct: 926 KDAERRLDAL---ENLDNLGAGFILATHDLEIRGAGELLGNEQSGQIESIGFS------- 975 Query: 753 VALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDW-----MSIADFQDFADQ 807 + + LL + ++ LK E + R D+ M ++ ++ A Sbjct: 976 LYMELLDAAVKALKEGREPSLEELTQQQADIELRVPALLPDDYLGDVNMRLSFYKRIAAA 1035 Query: 808 WFAAALGRPVELTVFDSPRDIPHHRKLTVTFEDGQVL-----KIRFDQG 851 A L +++ + D +P K + + ++L +R D G Sbjct: 1036 ESKAELD-ELKVELIDRFGLLPDATKNLLQITELRLLVEPLNVVRIDAG 1083 >UniRef50_C2KYF4 Transcription-repair coupling factor n=1 Tax=Oribacterium sinus F0268 RepID=C2KYF4_9FIRM Length = 1138 Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 50/329 (15%), Positives = 99/329 (30%), Gaps = 12/329 (3%) Query: 516 LDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWV 575 +D TP +P + + + + I +E+ A +R+ Sbjct: 737 VDVLTLSATP-IPRTLHMSLVGIRDLSILEEAPMDRLPIQTYVMEEEEGTIREAISRELR 795 Query: 576 SHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNC 635 + + D R+ + R A Q + L+ F G+++VL Sbjct: 796 RNGQVYYVHNRVKSIEDTALRLQKLLPEARIAYAHGQMGEKELEEIMLSFIAGEIDVLVS 855 Query: 636 STTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNA 695 +T +E G+D TL + + V RS L + + Sbjct: 856 TTIIETGLDIPNANTLIIQDADKMGLSQLY-QIRGRVGRSNRTSYAFLLYKKGKSLTEES 914 Query: 696 VERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVAL 755 +R+K I+ +L S D+ + + V Y Y + Sbjct: 915 EKRLKAIREFTELG---SGIRIALRDLEIRGAGNVLGAEQHGHMEAVGYE-LYTKLLRHA 970 Query: 756 ALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGR 815 LL + + +V LD P + ++ + +Q A + Sbjct: 971 VLLEKGEKQEEEDFETQLDVDLDAF-----IPESYMENEEQKLEAYQKIA-LLSSEEEKM 1024 Query: 816 PVELTVFDSPRDIPHHRKLTVTFEDGQVL 844 +E + D D+P+ + + L Sbjct: 1025 DLEDELTDRYGDLPYQVENLFQVASLRNL 1053 >UniRef50_C8P217 Transcription-repair-coupling factor (ATP-dependent helicase MFD) n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P217_ERYRH Length = 1138 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 55/391 (14%), Positives = 104/391 (26%), Gaps = 17/391 (4%) Query: 451 LGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPD---GNRFYLPKEHMTFSLITDAW 507 + +II L G VL D + L + + Sbjct: 675 EVLNRFVSDKEKNEIIQRVKDGKVDILVGTHRVLSRDVKFKDLGLLIIDEEQRFGVEHKE 734 Query: 508 ICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEG 567 +D TP +P + + L + + Sbjct: 735 RIKEFKVSVDVLSLSATP-IPRTLQMSLIGLRSLSQLNMPPSNRLPVMTYIIEKNQKTIN 793 Query: 568 LAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKN 627 +++ + + + + A Q ++ F + Sbjct: 794 DIISKELNRDGQVFYLFNNVEQIYSVASVIANHVEAANVAVVHGQMERHEIEDVMIRFIS 853 Query: 628 GQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFI 687 ++NVL C+T +E G+D T+ + + V RS Sbjct: 854 KEINVLVCTTIIETGIDIPNANTIIVDNAHRFGLSQLY-QIKGRVGRSDRLAYAYFVVPN 912 Query: 688 LPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDR 747 A +R++ I+ QL S + D+ E + I V D Sbjct: 913 KRGLTELAQKRLQAIKEFTQLG---SGYKIAMRDLTIRGAGELLGGNQSGFIDTVGI-DL 968 Query: 748 YLQNPVALALLGSILR-PLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFAD 806 Y+Q LL + ++ D E L D P + D + +Q Sbjct: 969 YVQ------LLKEAIAKRQGKEVIDVEEQERFNLKVDGYLPEDFTSDDGEKLDLYQQINQ 1022 Query: 807 QWFAAALGRPVELTVFDSPRDIPHHRKLTVT 837 L E+ + D +P+ K+ + Sbjct: 1023 IQSIDELKHFNEM-IDDRYGKLPNSVKMLLE 1052 >UniRef50_C4GD25 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GD25_9FIRM Length = 1185 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 47/299 (15%), Positives = 86/299 (28%), Gaps = 12/299 (4%) Query: 513 NKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKAR 572 K +D TP +P + + + + I D A R Sbjct: 779 KKNVDVLSLSATP-IPRTLHMSLVGIRDMSILDEAPMERTPIQTFVFEHNDEMIREAVLR 837 Query: 573 DWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNV 632 + + D+ R+ + A + S RL++ F +G++++ Sbjct: 838 EMARGGQIYYVFNRVAQIADMTARLQKLLPEAHVAYAHGRMSQTRLENIMVDFIDGEIDL 897 Query: 633 LNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKA 692 L +T +E+G+D V T+ + L V RS Sbjct: 898 LVSTTIIEIGLDISNVNTIIIDDADNMGLSQLYQLR-GRVGRSNRTAYAFFMYRRGKLLK 956 Query: 693 TNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNP 752 A +R+ I+ L S F D+ + + V Y Sbjct: 957 EVAEKRLLAIKEFSDLG---SGFKIAMRDLEIRGAGNVLGESQSGHMESVGYD------- 1006 Query: 753 VALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAA 811 + +LG +R K + T L D P + + ++ AD Sbjct: 1007 LYCKMLGEAVRQEKGEEIYEPFETSVDLDMDAYLPESYVADAGQRMEIYKRIADIRSEE 1065 >UniRef50_B0S0H3 Transcription-repair coupling factor n=3 Tax=Clostridiales Family XI. Incertae Sedis RepID=B0S0H3_FINM2 Length = 1168 Score = 131 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 49/399 (12%), Positives = 107/399 (26%), Gaps = 17/399 (4%) Query: 435 QIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPD---GNRF 491 R + + A I+ + L G +L + + Sbjct: 691 HFNTIKERFRDYPIRVEMMSRFVSPARQKQIMKDVQRGLVDLLVGTHRILSKNLKFKDLG 750 Query: 492 YLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTM 551 L + + + +D TP +P + + Sbjct: 751 LLVIDEEQRFGVRHKEKLKSMRENVDVLTLSATP-IPRTLQMGLTGIRDMSLLEEPPEDR 809 Query: 552 PEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSA 611 I A R+ + + ++ E A Sbjct: 810 TPISTYVTEYNPSLIRDAIIRELDRGGQIYFVYNRIEDIDQMEFKLKELVPELNIAIAHG 869 Query: 612 QQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDEL 671 + + + L++ F++G ++L C+T +E G+D V T+ + + Sbjct: 870 RMNEKELENVMLDFQDGIYDLLLCTTIIETGLDIQNVNTMIIYNADKMGLSQLY-QLKGR 928 Query: 672 VVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQ 731 + RS + + +R+ I+ + S F D+ Sbjct: 929 IGRSDRTSFAYFTYEGQKSLTEISEKRLMAIKDFTEFG---SGFKIAMRDLELRGAGNLL 985 Query: 732 SLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKTKLTDGAEVTLDTL-FKDKDRPGNR 790 + I + Y D Y+ LL +R K + + T+ + P + Sbjct: 986 GESQHGHIAKIGY-DLYV------KLLEQAVREAKGETISENKNTVIIEIKVNGYIPEDY 1038 Query: 791 PFHDWMSIADFQDFADQWFAAALGRPVELTVFDSPRDIP 829 + I ++ A ++ + D D+P Sbjct: 1039 ISENETKIDIYKKIASIQDEDDYSEIID-ELIDRFGDVP 1076 >UniRef50_C6A8D1 Transcription-repair coupling factor n=17 Tax=Actinobacteridae RepID=C6A8D1_BIFLB Length = 1194 Score = 131 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 53/348 (15%), Positives = 101/348 (29%), Gaps = 25/348 (7%) Query: 513 NKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKAR 572 +D TP +P + + + T + + ED A R Sbjct: 790 RTNVDVLSLSATP-IPRTLEMAVTGIREMSTLATPPEDRLPVLTYVGAYEDAQVTAAIRR 848 Query: 573 DWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNV 632 + + + + R+ + R + ++L + F + ++V Sbjct: 849 ELLRGGQVFYIHNRVEGIEEKAKRLQDLVPEARIGIAHGKMGRKQLDQIIRDFWHRDIDV 908 Query: 633 LNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKA 692 L C+T +E G+D TL H V R Sbjct: 909 LLCTTIVETGLDISNANTLIVDRADRFGLSQL-HQLRGRVGRGRDRAYAYFLYDPSKPMT 967 Query: 693 TNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNP 752 + ER+ I + L S F D+ + I GV + D Y++ Sbjct: 968 EQSHERLVTIAQNTALG---SGFDVAMKDLELRGTGNLLGDEQSGHIEGVGF-DLYVR-- 1021 Query: 753 VALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFA-- 810 ++ + K L + P + D + + ++ A Sbjct: 1022 ----MVSEAIEDYKDPERTEPVAVTIDLPIEASIPVDYIGSDKLRLEVYRKLAGARSEKD 1077 Query: 811 ---------AALGRPVEL--TVFDSPRDIPHHRKLTVTFEDGQVLKIR 847 G+P ++ ++FD R R L ++ GQ K+R Sbjct: 1078 LNELRDELTDRYGKPPKVFESLFDVARLREKARALGISEIIGQGRKLR 1125 >UniRef50_Q6FCF0 Transcription-repair coupling protein n=17 Tax=Gammaproteobacteria RepID=Q6FCF0_ACIAD Length = 1171 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 61/479 (12%), Positives = 136/479 (28%), Gaps = 38/479 (7%) Query: 414 SKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEA 473 + + + ++ WP + + N I Sbjct: 678 PTTLLAQQHYESFKDRFADWP-------------IRIEVLSRFGSNKTHQKNIEDLQTGK 724 Query: 474 WAQLTGPLAVLKPDGNRFYLPK---EHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTH 530 + G +L+ L + + D +D TP +P Sbjct: 725 VDIVVGTHKLLQETVQFHDLGLMIVDEEHRFGVRDKERIKAMRADVDMLTLTATP-IPRT 783 Query: 531 ISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVW 590 ++ + + + D + A R+ + + + Sbjct: 784 LNMAFSGMRDLSIIATPPARRLAVKTFVQEHTDDSVREAILRELLRGGQVYFLHNEVDSI 843 Query: 591 TDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMT 650 + + R A Q L+ + F + + NVL CST +E G+D T Sbjct: 844 ERTAENIRNLVPEARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANT 903 Query: 651 LASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNG 710 + H V RS L + +A +R+ IQ L Sbjct: 904 IIMERADKLGLAQL-HQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLG- 961 Query: 711 PLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKTKLT 770 + F D+ E + + + Y+ + + +L + ++ T Sbjct: 962 --AGFMLATEDLEIRGAGELLGEQQSGSMQAIGYS-------LYMEMLEKATKAIQKGKT 1012 Query: 771 DGAEVTLDTLFKDKDRPGNRPFHDW-----MSIADFQDFADQWFAAALGRPVELTVFDSP 825 + L + ++ + ++ ++ L + + + D Sbjct: 1013 PNFDAPLSLTAEINLHMPALIPDEYLGDVHQRLLFYKRISNTDTQEKLD-NIRMELIDRF 1071 Query: 826 RDIPHHRKLTVTFEDGQVLKIRFDQGMGYWRINFSSQWHYFDFRDDVSFQLVKMAQACK 884 +P K L+++ ++ +G +I+ +SQ Y +F D Q + + Q + Sbjct: 1072 GTLPVSVKQLFHVH---QLRLQAEE-LGITKIDLNSQGGYIEFSQDTPVQAISIIQLMQ 1126 >UniRef50_C0R051 Transcription-repair coupling factor n=3 Tax=Brachyspira RepID=C0R051_BRAHW Length = 1247 Score = 130 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 41/348 (11%), Positives = 96/348 (27%), Gaps = 27/348 (7%) Query: 517 DTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVS 576 D TP +P ++ + + + + A A R+ Sbjct: 792 DVLTLSATP-IPRTLNMALTGIRDISIIETPPLNRIPVKTFVTEFSEDAVVNAIERELKR 850 Query: 577 HDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCS 636 + + + + R + + +L+ F N + ++L + Sbjct: 851 EGQVFYLYNRIDTIESFALMIKKLCPKARICVAHGRMTGHQLEKIMGDFINHKYDILVST 910 Query: 637 TTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAV 696 T +E G+D T+ + + L V RS + A A Sbjct: 911 TIIENGIDIPNANTILIDNANKLGLSELYQLR-GRVGRSDREAYAYMFYPSDLALTEVAY 969 Query: 697 ERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALA 756 +R++ I H L + F D+ + I V Y + Sbjct: 970 KRLEAISEHTDLG---AGFKIAMRDLEIRGAGNILGKEQSGMIYQVGYE-------LYTQ 1019 Query: 757 LLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHD-----------WMSIADFQDFA 805 +L K ++ + T+ L + P + + +++ Sbjct: 1020 MLEEAANEYKGEIKEVTFDTVIDLKHNLFIPDSYIADSKEKISAYKLIMRSQRDEDIEYS 1079 Query: 806 DQWFAAALGRPV----ELTVFDSPRDIPHHRKLTVTFEDGQVLKIRFD 849 ++ G+ ++ + I ++ E + ++ D Sbjct: 1080 KEFMIDKYGKLPKELEDIFDIAKVKIILKRMRILSVIEGHYNIYLKLD 1127 >UniRef50_D2BIN1 Transcription-repair coupling factor (Superfamily II helicase) n=5 Tax=Dehalococcoides RepID=D2BIN1_DEHSV Length = 1154 Score = 130 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 42/290 (14%), Positives = 85/290 (29%), Gaps = 21/290 (7%) Query: 513 NKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKAR 572 +D TP +P + + + I + + ++ A R Sbjct: 759 RAQVDVLTLSATP-IPRTLHMSMVGVRDMSVIETPPGERLPIKTVVAAFDERLIREAILR 817 Query: 573 DWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNV 632 + + + + +R+ + R Q + ++L + F +L+V Sbjct: 818 EMERNGQVFFVSNRVMGINLLAERIQKLVPEARIGIGHGQMAEDKLAAVMADFVRYELDV 877 Query: 633 LNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKA 692 L C+T +E GVD TL + L V RS + Sbjct: 878 LVCTTIIESGVDVPNANTLIINRADRFGLTQLYQLR-GRVGRSSQLAYAYFLYDKEKHLS 936 Query: 693 TNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNP 752 +A +R+K I +L + +G D+ + + I V + Sbjct: 937 GDAEKRLKTIYEAAELG---AGYGIAMKDLEIRGAGTLLGVKQSGYINSVGFN------- 986 Query: 753 VALALLGSILRPLKTKLTDGAEVTLDT---------LFKDKDRPGNRPFH 793 + +L + LK + ++ + L D P Sbjct: 987 LYTQMLSEAVAGLKAAGSGLSKEEIRIQNMPAPKLDLPLDAFIPEYYIQD 1036 >UniRef50_A6CB65 Transcription-repair coupling factor n=2 Tax=Planctomyces RepID=A6CB65_9PLAN Length = 1112 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 51/325 (15%), Positives = 92/325 (28%), Gaps = 14/325 (4%) Query: 513 NKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKAR 572 +D TP +P + L + I + A R Sbjct: 711 RLQIDVLTLSATP-VPRTLHMSLLGIRDISNLTTAPRDRVPIETRITRFDPELIRHAMVR 769 Query: 573 DWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNV 632 + + + + DR+ + Q L++ F +G++++ Sbjct: 770 ELNRNGQVYFVHNRVHDLQKYADRIQQIVPEASIGIGHGQMKETELEAAMLNFVSGKVDI 829 Query: 633 LNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKA 692 C+T +E G+D T+ H V RS L Sbjct: 830 FVCTTIIESGLDIPNANTIFIHDAGNHGLSDL-HQLRGRVGRSHHRAYCYLLLRDGQMLT 888 Query: 693 TNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNP 752 A +R+K I+ + +L + F D+ + I V Y Sbjct: 889 PIAAKRLKAIEEYSELG---AGFKIAMRDLEIRGAGNILGTEQSGHIAAVGYE------- 938 Query: 753 VALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAA 812 + LL + R LK + L P + + I ++ + Sbjct: 939 LYCQLLENACRKLKNEPIREHHHVAIDLPCTAYLPSDYIPPGRIKIELYRKLSAVRSLEE 998 Query: 813 LGRPVELTVFDSPRDIPH-HRKLTV 836 L E + D IPH R+L + Sbjct: 999 LNALEE-EMEDRFGPIPHPARQLLI 1022 >UniRef50_B2A3P0 Transcription-repair coupling factor n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A3P0_NATTJ Length = 1196 Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 52/374 (13%), Positives = 99/374 (26%), Gaps = 36/374 (9%) Query: 513 NKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKAR 572 K LD TP +P + + + + A R Sbjct: 782 KKNLDVLTMTATP-IPRTLHMSLVGVRDLSVIETPPEGRFPVQTYVMEHSPQLIREAVNR 840 Query: 573 DWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNV 632 + + + V + + Q ++L+ F G+ +V Sbjct: 841 EISREGQVYVVHNRVKGINKVAKEVADWVPDAKVGVAHGQMPEKQLERVMLDFYEGKYDV 900 Query: 633 LNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKA 692 L ++ +E G+D V T+ + + L V RS L Sbjct: 901 LVSTSIVEAGLDIQNVNTIIIYNADRMGLSQPYQLR-GRVGRSNRMAYAYLTYQKDKVLT 959 Query: 693 TNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNP 752 A +R+K I+ +L S F D+ + I V + D Y Sbjct: 960 QEAEKRLKAIKEFTELG---SGFKLALRDLEIRGAGNILGPEQHGHIMAVGF-DMY---- 1011 Query: 753 VALALLGSILRPLKTKL----------TDGAEVTLDTLFKDKDR-----PGNRPFHDWMS 797 +L ++ + + D EV K + P Sbjct: 1012 --TKMLKDAIKEISQESQTQEETTKIQDDKTEVEKPEEVKVELNINAYLPTTYISDHEQK 1069 Query: 798 IADFQDFADQWFAAALGRPVELTVFDSPRDIPHHRKLTVTFEDGQVLKIRFDQGM----- 852 I ++ + +E + D +P K + ++ + + G+ Sbjct: 1070 ITIYKKARSINSYSEAN-DLETELKDRFGSLPQEVKNLLDIT--RLKVLARETGIISITR 1126 Query: 853 -GYWRINFSSQWHY 865 GYW Sbjct: 1127 QGYWVHLDLDPRQK 1140 >UniRef50_P30958 Transcription-repair-coupling factor n=202 Tax=Bacteria RepID=MFD_ECOLI Length = 1148 Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 58/400 (14%), Positives = 115/400 (28%), Gaps = 23/400 (5%) Query: 440 NVSHRLAKLLMLGAGFKTVNAATID--IINTWLKEAWAQLTGPLAVLKPD---GNRFYLP 494 N R A + +A I+ + L G +L+ D + L Sbjct: 668 NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727 Query: 495 KEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEI 554 + + +D TP +P ++ + + Sbjct: 728 VDEEHRFGVRHKERIKAMRANVDILTLTATP-IPRTLNMAMSGMRDLSIIATPPARRLAV 786 Query: 555 WKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQS 614 R + A R+ + + +R+ E R A Q Sbjct: 787 KTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMR 846 Query: 615 SERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVR 674 L+ F + + NVL C+T +E G+D T+ H V R Sbjct: 847 ERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQL-HQLRGRVGR 905 Query: 675 SLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLM 734 S L A T+A +R++ I + L + F D+ E Sbjct: 906 SHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLG---AGFALATHDLEIRGAGELLGEE 962 Query: 735 NNTRITGVHYTDRYLQNPVALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHD 794 + + + ++ + + LL + + LK E + + R + D Sbjct: 963 QSGSMETIGFS-------LYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDD 1015 Query: 795 W-----MSIADFQDFADQWFAAALGRPVELTVFDSPRDIP 829 + ++ ++ A L +++ + D +P Sbjct: 1016 FIPDVNTRLSFYKRIASAKTENELE-EIKVELIDRFGLLP 1054 >UniRef50_Q12NL8 Transcription-repair coupling factor n=2 Tax=Shewanella RepID=Q12NL8_SHEDO Length = 1179 Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 57/430 (13%), Positives = 125/430 (29%), Gaps = 26/430 (6%) Query: 414 SKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEA 473 + + + ++ WP R AK + I I L ++ Sbjct: 686 PTTLLAQQHYENFKDRFADWPVEIEVMSRFRSAKEQEQVLQSLSEGKVDIVIGTHKLLQS 745 Query: 474 WAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISF 533 A+ ++ + +RF + ++ +L +D TP +P ++ Sbjct: 746 EAKFVDLGLLIIDEEHRFGVRQKEKIKAL----------RANVDILTLTATP-IPRTLNM 794 Query: 534 EHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDI 593 + + R A R+ + + + Sbjct: 795 AMSGMRDLSIIATPPAKRLAVKTFVREYHQATIREALLREILRGGQVYYLHNNVETIEKC 854 Query: 594 NDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLAS 653 + + R Q L+ F + + NVL C+T +E G+D T+ Sbjct: 855 AQDLRDLLPEARVVTGHGQMRERDLEKVMADFYHQRFNVLVCTTIIETGIDVPSANTIVI 914 Query: 654 RSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLS 713 H V RS + + +T+A +R++ I ++L + Sbjct: 915 DRADKFGLAQL-HQLRGRVGRSHHQAYAYMITPPIKLISTDARKRLEAIDALEELG---A 970 Query: 714 QFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKTKLTDGA 773 F D+ E + I+ + ++ + + +L S + LK Sbjct: 971 GFMLATQDLEIRGAGELLGDEQSGHISKIGFS-------LYMEMLESAVSALKEGKEPSL 1023 Query: 774 EVTLDTLFKDKDRPGNRPFHDWMSIADFQ----DFADQWFAAALGRPVELTVFDSPRDIP 829 L+ + R D++S + + + A+ + + D +P Sbjct: 1024 AYMLNAQCEVDLRIPALLPEDYVSDVNMRLSMYKRIANCKSEAMLDELRVEFIDRFGLLP 1083 Query: 830 HHRKLTVTFE 839 K + Sbjct: 1084 EPTKNLLELS 1093 >UniRef50_Q1NPX2 Transcription-repair coupling factor n=3 Tax=delta proteobacterium MLMS-1 RepID=Q1NPX2_9DELT Length = 1162 Score = 129 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 64/472 (13%), Positives = 128/472 (27%), Gaps = 29/472 (6%) Query: 453 AGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPK---EHMTFSLITDAWIC 509 +A ++ + G +L D L + ++ Sbjct: 685 LNRFRSSAEQKRLVADLAAAKIDIVIGTHRLLSADVKFRRLGLLIVDEEHRFGVSHKEKI 744 Query: 510 PVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLA 569 +D TP +P + L + + + +D A Sbjct: 745 KKLRSGVDVLTLTATP-IPRTLQLSLLGVRDLSVISSPPRLRRAVKTFIARHDDLVIKEA 803 Query: 570 KARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQ 629 R+ + + ++ R + + A Q + +L+ F + Sbjct: 804 IMRELGRDGQVFLVHNRVSSIHEVATRAQQLVPTAQVAVAHGQMPARQLEEIMVRFVRRE 863 Query: 630 LNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILP 689 +NVL C+T +E G+D T+ + L V RS L L Sbjct: 864 INVLVCTTIIESGLDIPDANTIIITRADRLGLAEIYQLR-GRVGRSRQQAYAYLLVPALD 922 Query: 690 AKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYL 749 A A R++ + + +L G F D+ + I V Y D YL Sbjct: 923 DLAGEARHRLQALMDYNELGG---GFKLALSDLQIRGGGNILGESQSGNIAAVGY-DMYL 978 Query: 750 QNPVALALLGSILRPLKTKL----TDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFA 805 + + + R L+ + F+ + + + D Sbjct: 979 D--LLQKTVLDLKRRLREGEETSSDPETMAEVGEEFEPEIKLAIAAHIPASYVDDVNQRY 1036 Query: 806 DQWFA------AALGRPVELTVFDSPRDIP--HHRKLTVTFEDGQVLKI---RFDQGMGY 854 + A + D +P + ++ ++ + +QG Sbjct: 1037 LCYRRITAAEDDATLADIRDEFADRFGPLPPETANLFEIISLKNRLAELKISKIEQGPTA 1096 Query: 855 WRINFSSQWHYFDFRDD-VSFQLVKMAQACKEGNVA--NSEESWATDVLVEV 903 + F+ R + Q K + EG + T V E+ Sbjct: 1097 LALFFAPSTPVPPERLTELVAQGKKGMRLTPEGKLIKPLPANPSPTVVFNEI 1148 >UniRef50_C6P0P2 Transcription-repair coupling factor n=5 Tax=Betaproteobacteria RepID=C6P0P2_9PROT Length = 1227 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 40/262 (15%), Positives = 76/262 (29%), Gaps = 12/262 (4%) Query: 513 NKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKAR 572 +D TP +P ++ L + I A R Sbjct: 831 RAEVDVLTLTATP-IPRTLAMSLEGLRDFSVIATAPQRRLSIKTFVSGFSQGVIREAVLR 889 Query: 573 DWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNV 632 + + + ++ +++ R Q L++ + F + + NV Sbjct: 890 ELKRGGQVYFLHNEVDTIANMLEKLETLLPEARIRVAHGQMGERDLEAVMRDFHHQRFNV 949 Query: 633 LNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKA 692 L CST +E G+D T+ H V RS L + Sbjct: 950 LLCSTIIETGIDVPTANTIIMNRADRFGLAQL-HQLRGRVGRSHHQAYAYLLVDSMDGLT 1008 Query: 693 TNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNP 752 A +R++ IQ +QL S F D+ E + + + ++ Sbjct: 1009 AQAKKRLEAIQAMEQLG---SGFFLAMHDLEIRGAGEVLGESQSGEMQEIGFS------- 1058 Query: 753 VALALLGSILRPLKTKLTDGAE 774 + +L + + LK Sbjct: 1059 LYNDMLAAAIASLKQGKEPDMT 1080 >UniRef50_A8M876 Helicase superfamily 1 and 2 ATP-binding n=2 Tax=Actinomycetales RepID=A8M876_SALAI Length = 2125 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 105/809 (12%), Positives = 206/809 (25%), Gaps = 115/809 (14%) Query: 13 SPVYEVAFCNDCN--------EPH---LLARDKKGKLVQWENKGGDEFSLQDEVPVEHDA 61 P + +C C P L A D+ + +G L V Sbjct: 506 RPSFPAVYCRFCGRSGWGVALAPVGTGLAADDEAIRRNHATREGRFRALLYAPVEANAAY 565 Query: 62 TEEKVEKENSFQPPLIIAAGETSEAGYTLQRLD---RQTRRIGVINNDSIPLIINDIEQV 118 + + D R + V+ + + Sbjct: 566 DGA-----PQPEGLAWFSVRGRELLATPPPDDDSDLRDGWILPVLTTAGRDADEHARDDT 620 Query: 119 CSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRG 178 C + R ++ + T+ G +L + Sbjct: 621 CPSCA-------QPDGIRFLGSAIATLLSVSLSTLF---------------GSAALDVQE 658 Query: 179 RRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAA 238 ++ + FTDS Q A A ++ + LR ++ ++ L+ L Sbjct: 659 KKALVFTDSVQDAAHRAGFVEARSHTLTLRAALNAAIAP-----------GTLTLDALVE 707 Query: 239 RAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELK 298 A + + R + ++ A + + + R ++ E Sbjct: 708 DAIRRTGEDNFQRYRLLGPDCVDRESFAPFWTSKTLRGVPARVMSRIRKRLALDVAMEFG 767 Query: 299 ERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQ 358 + + + +L + P + E Sbjct: 768 LNSRTGRTLELTGAATVEVDAGPPNRMAAAARTVLTGFAAQSPLGADDAEPT-------- 819 Query: 359 GLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVR 418 TL W ++ LD +R ++ R Sbjct: 820 ---------------DETLVRW---VRGVLD-RMRVQGAIDHP----WFVTFRQEDGNRW 856 Query: 419 NPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLT 478 + P +P R R +G V + +D + + Sbjct: 857 SIWGGRPRGEGMPAFPNTRPAPSYPR------VGGSANPVRDSDLDAVTAAQSWYARWTS 910 Query: 479 GPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTL 538 L+V DG R + L D + VT++ T + P + L Sbjct: 911 RALSVSPADGGR---LVRLLLDRLARDGVLITVTSRSGATVYA--IPPSGVAVGPARLDD 965 Query: 539 AQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVV 598 + T + R+ D +G L E + + R+ Sbjct: 966 LTAGRHLLACDTCRALVPGSRTTVDQLDGAPCMLVRCHGR-----LAREALADNFYRRLY 1020 Query: 599 EGGFYYR--TAEHSAQQSSERLQSYEKMFKNGQ-----LNVLNCSTTMEMGVDTDRVMTL 651 R EH++ SYE FKN NVL + T+EMG+D + T+ Sbjct: 1021 ASPDMRRIVAREHTSLLDDATRLSYEDGFKNSSTEPNAPNVLVATPTLEMGIDIGDLSTV 1080 Query: 652 ASRSQQATIPG--PEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLN 709 S T+ + +L + LP +++ Sbjct: 1081 LLSSLPRTVASYLQRIGRAGRVTGNALNLAYLTGRGDQLPKLGDPLSVINGEVRPPATYL 1140 Query: 710 GPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKTKL 769 ++F L + + + R T + + + + + LG ++ +T Sbjct: 1141 SAEEILRRQFTACLVD------GMARDDRHTHPNSAQQAIGSTDPGSFLGELIAVAETGG 1194 Query: 770 TDGAEVTLDTLFKDKDRPGNRPFHDWMSI 798 D DT+ DW++ Sbjct: 1195 ADAVHRFTDTV-GPLPDSTVDALTDWVNP 1222 >UniRef50_C7TMD0 Transcription-repair coupling factor n=18 Tax=Lactobacillus RepID=C7TMD0_LACRL Length = 1175 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 53/330 (16%), Positives = 95/330 (28%), Gaps = 12/330 (3%) Query: 516 LDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWV 575 +D TP +P ++ L + I Q A R+ Sbjct: 767 VDVLTLTATP-IPRTLNMSMLGVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREME 825 Query: 576 SHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNC 635 + ++ E Q + +L++ F +G +VL Sbjct: 826 RGGQVFYLHNRVEDMERTVSQLEELVPDASIGYAHGQMTETQLENVIYDFLHGAYDVLVT 885 Query: 636 STTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNA 695 +T +E GVD TL + + L + RS + A Sbjct: 886 TTIIETGVDMPNANTLIIENADHYGLSQLYQLR-GRIGRSSRVAYAYFMYQPMKVLNEVA 944 Query: 696 VERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRY---LQNP 752 +R++ I+ +L S F D+ + I V Y D Y LQ Sbjct: 945 EKRLQAIKDFTELG---SGFKIAMRDLSIRGAGNLLGKQQHGFIDSVGY-DLYTQMLQEA 1000 Query: 753 VALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAA 812 V ++ ++ G E L T + R + + AD + + Sbjct: 1001 VNKRRGLKTVQKTDAEIDLGLEAYLPTDYVADSRQKIELYKR-IREADSDEAETEISEDL 1059 Query: 813 LGRPVEL-TVFDSPRDIPH-HRKLTVTFED 840 + R + + I H R + + D Sbjct: 1060 IDRFGDYPQPVTNLLAIAHLKRFADLAWVD 1089 >UniRef50_A0Q6R1 Transcription-repair coupling factor n=19 Tax=Francisella RepID=A0Q6R1_FRATN Length = 1141 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 57/383 (14%), Positives = 118/383 (30%), Gaps = 26/383 (6%) Query: 516 LDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWV 575 +D TP +P +S L + + + ++ A +R+ + Sbjct: 746 IDILTMSATP-IPRSLSMAFSALRDLSIIASPPAKRLSVKTFVKEYDNNIIREAVSRETI 804 Query: 576 SHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNC 635 + + + E R A Q S + +Q FK+ + ++L C Sbjct: 805 RGGQIFYLYNKVETIQKKKEILQELFPRLRIAIAHGQMSEKEIQKVMFDFKHNKYHILLC 864 Query: 636 STTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNA 695 +T +E G+D TL H V RS + + +A Sbjct: 865 TTIIETGIDIPNANTLIIEDANNLGLAQL-HQLRGRVGRSHHQAYAYMLIPNEASITKDA 923 Query: 696 VERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVAL 755 ++R++ I + L G F D+ E + I G+ + + Sbjct: 924 LKRLEAISNTESLGG---GFTLANHDLEIRGAGEILGEEQSGNIDGIGLN-------LYM 973 Query: 756 ALLGSILRPLKTKLTDGAEVTLDT------LFKDKDRPGNRPFHDWMSIADFQDFADQWF 809 LL + L+ E +++ L P + + ++ + Sbjct: 974 DLLDKTIANLRAGKELNIEEVINSTVCEVELNIPTLIPDYYIYDVNTRLNIYKRISKASH 1033 Query: 810 AAALGRPVELTVFDSPRDIPHHRKLTVTFEDGQVLKIRFDQ-GMGYWRINFSSQWHYFDF 868 + +EL D +P + V I+ D +G +I + F Sbjct: 1034 QDLVNIKIEL--IDRFGKLPLEVLYLLK-----VAHIKIDAIALGISQIKMFATSGKISF 1086 Query: 869 RDDVSFQLVKMAQACKEGNVANS 891 ++ F+L K+ + + + Sbjct: 1087 SNNTKFELQKLIKLIQSQHSDFR 1109 >UniRef50_UPI0001C15DBE DEAD/DEAH box helicase domain protein n=1 Tax=Cylindrospermopsis raciborskii CS-505 RepID=UPI0001C15DBE Length = 2190 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 91/687 (13%), Positives = 188/687 (27%), Gaps = 133/687 (19%) Query: 176 GRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEK 235 + ++L+ F+DS Q A A R+ LR ++ + + + Sbjct: 663 NQDKKLLAFSDSVQDAAHRAGFYNSRTYRTTLRTAIFQAVQNLSAGEG------------ 710 Query: 236 LAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVN 295 KQ E +Y + + + T A + W + Sbjct: 711 -KISLKQLVEGFSDYWLTTLTKEGD-------------KDYTKYVATFLPSDLHWLQEWE 756 Query: 296 ELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQV 355 +L E D K E+ K E + +F R +LE+ GL V Sbjct: 757 KLIENPDY---------LSKEELTRLLSFLKKRLEWEVVAQFSHRATIGTTLESSGLCSV 807 Query: 356 GYQG---LEKIHKSPLHWQEK-----GLTLDDWRDFLKVTLDH----------YVRESNF 397 G+ + + + ++ + G++ +F+ L+H V + Sbjct: 808 GFNQSIIEQSVQELIIYLNNEIELLSGVSYPKVHEFIFGILNHLRLLGGIYQPVVANHGY 867 Query: 398 TQLDDELKNWIGSRFSSKFVRNPESKDPEDNQNR--RWPQIRNGNVSHRL-AKLLMLGAG 454 + W F KF + N W + + + Sbjct: 868 IETGGNHFVWSNLWFMPKFSYSATIPKFLTTNNGENSWEAVFSNSTRGSWCENWTERV-- 925 Query: 455 FKTVNAATIDIINTWLKEAWAQLTGPLAVLKPD---GNRFYLPKEHMTFSLITDAWICPV 511 F + + L + LT + + G+ + +P + D +C Sbjct: 926 FSSFGLLMREQCKQILYQTLDILTKTKILERRKSEKGDVWGIPMNVIEIFPQGDVLLCDS 985 Query: 512 TNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKA 571 N + L H + ++ ++ Sbjct: 986 CN---------HSVTLSPHAGVGG------TCYNSKCNGKYQVPSSGLV----------- 1019 Query: 572 RDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMF----KN 627 ++ + R + EH++ S ++ E++F + Sbjct: 1020 -----------------YYSQLYQRGQVHRVF--AQEHTSMLSRPHRENLERLFITSARA 1060 Query: 628 GQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVR---------SLGY 678 N+++ ++T+EMG++ + ++ S + R Sbjct: 1061 CDPNLISATSTLEMGINIGDLSSIVLCSIPPN--SANFQQRVGRAGRKQGNALISAIATG 1118 Query: 679 KTVELNEFILPAKATNAVERVK--DIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNN 736 K +L + P + + + L L+ F W EE + Sbjct: 1119 KAHDLFFYADPRELIDGRVEPAGCYLNAAAILKRQLTAFCLDCWVTQGVSKEELPIQLQ- 1177 Query: 737 TRITGVHYTDRYLQNPVALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWM 796 + D+ + L I R K L D + + R G D Sbjct: 1178 ---KSLDAVDKCDEGRFPYTWLKFIERHKKKLLDDFLSLFTN------LREGREKTRDNT 1228 Query: 797 SIADFQDFADQWFAAALGRPVELTVFD 823 D+ ++ LG + +T D Sbjct: 1229 QDEDYNRVDGEYLRKELGAFIGITPGD 1255 >UniRef50_Q2SWT7 Transcription-repair coupling factor n=107 Tax=Proteobacteria RepID=Q2SWT7_BURTA Length = 1217 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 50/321 (15%), Positives = 87/321 (27%), Gaps = 16/321 (4%) Query: 513 NKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKAR 572 +D TP +P + L + I R +E+ A R Sbjct: 809 RAEVDVLTLTATP-IPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEESVIREAMLR 867 Query: 573 DWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNV 632 + + + + E R Q L+ + F + NV Sbjct: 868 ELKRGGQVYFLHNEVETIENRRAMLEELVPEARIVIAHGQMHERELERVMRDFVAQRANV 927 Query: 633 LNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKA 692 L C+T +E G+D T+ H V RS L A Sbjct: 928 LLCTTIIETGIDVPSANTIIMHRADKFGLAQL-HQLRGRVGRSHHQAYAYLLVHDPQALT 986 Query: 693 TNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNP 752 A R++ IQ ++L S F D+ E + I + + Sbjct: 987 KQAQRRLEAIQQMEELG---SGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQ------- 1036 Query: 753 VALALLGSILRPLKTKLTDGAEVTL-DTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAA 811 + +L ++ LK L T + P P + + + Sbjct: 1037 LYTEMLNDAVKALKNGKEPDLTAPLAATTEINLHAPAILPADYCGDVQERLSLYKRLANC 1096 Query: 812 ALGRPVE---LTVFDSPRDIP 829 G ++ + D +P Sbjct: 1097 EHGDAIDGIQEELIDRFGKLP 1117 >UniRef50_C0E926 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E926_9CLOT Length = 1152 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 41/294 (13%), Positives = 80/294 (27%), Gaps = 15/294 (5%) Query: 514 KILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARD 573 + +D TP +P ++ + I + A R+ Sbjct: 762 RGVDVLTLSATP-IPRTLNMAMSGIRDMSVIEQAPQDRHPIQTYVIEHDYGVIADAIKRE 820 Query: 574 WVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVL 633 + ++ + R + L + ++++L Sbjct: 821 LRRDGQVYYIHNRVESIQSCAAQISKLVPDARIGIAHGKMGENELSRIWQQLMEHEIDIL 880 Query: 634 NCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKAT 693 C+T +E GVD TL + L V RS + Sbjct: 881 VCTTIIETGVDVSNCNTLIIEDADNMGLSQLYQLR-GRVGRSKRRASAYFTFRRGKVLTE 939 Query: 694 NAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPV 753 A +R+ I+ + S F D+ + + V Y D YL+ Sbjct: 940 IASKRLSAIREFTKFG---SGFRIALRDLEIRGAGSILGERQHGHMEAVGY-DMYLR--- 992 Query: 754 ALALLGSILRPLKTKLTDGAEVT--LDTLFKDKDRPGNRPFHDWMSIADFQDFA 805 LL + K + +V L L + P + + + ++ A Sbjct: 993 ---LLSDAVSE-KQGVKPPTKVEECLIDLPMEAHIPEDYIENLAQRLDIYRKIA 1042 >UniRef50_C8W311 Transcription-repair coupling factor n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W311_DESAS Length = 1197 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 47/317 (14%), Positives = 88/317 (27%), Gaps = 13/317 (4%) Query: 513 NKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKAR 572 + +D TP +P + + + + +E A R Sbjct: 800 RQNVDVLTLTATP-IPRTLHMSIVGVRDTSLLETPPEDRIPVQTYVLEEEPVIVREAIRR 858 Query: 573 DWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNV 632 + + + + A Q +RL++ F N + ++ Sbjct: 859 ELGRGGQVYYVHNRVADLDRVAGWLKGLVPDAAIAIGHGQMKEDRLENVMLDFMNKKFDI 918 Query: 633 LNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKA 692 L C+T +E G+D V TL + + L V R+ + Sbjct: 919 LLCTTIIETGLDIQNVNTLIVKDADYMGLAQLYQLR-GRVGRTNRLAYAYCTFRGDKVMS 977 Query: 693 TNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNP 752 A +R+ ++ + S + D+ + I V + D Y Sbjct: 978 ELAEKRLSAVREFTEFG---SGYKIAMRDLEIRGAGNILGPEQHGHIAAVGF-DLY---- 1029 Query: 753 VALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAA 812 LL + K TL L P + ++ A+ Sbjct: 1030 --CRLLEEAVLEAKGGENAKPIETLVELPVTAYIPDEYVIDLNQKVELYKRMANIRDIKM 1087 Query: 813 LGRPVELTVFDSPRDIP 829 L +E + D DIP Sbjct: 1088 LS-EMEDELIDRFGDIP 1103 >UniRef50_B5JG36 Transcription-repair coupling factor n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JG36_9BACT Length = 1144 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 51/329 (15%), Positives = 96/329 (29%), Gaps = 16/329 (4%) Query: 513 NKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKAR 572 +D TP +P + + V I + +S +D R Sbjct: 730 RSTVDILTMSATP-IPRTLYMALTGARELSVIETAPVERKPIQTIVKSYDDALVSEVIRR 788 Query: 573 DWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNV 632 + + + ++ + Q ++L++ F N + V Sbjct: 789 EIARGGQVFYLHNRVQTINTVAAKLEKMLPEVSIGVGHGQMDEKKLENVMLDFVNQKYQV 848 Query: 633 LNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKA 692 L C+T +E G+D T+ + L V R L Sbjct: 849 LVCTTIIESGLDIPNCNTIIIEGADRFGLSQLYQLR-GRVGRFKRQAYAYLLLHKHKRLM 907 Query: 693 TNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNP 752 A +R+ I+ H QL + F D+ + I GV + Sbjct: 908 DVARKRLAAIRHHNQLG---AGFRLAMRDLELRGAGNLLGSEQSGHIVGVGFE------- 957 Query: 753 VALALLGSILRPLKTKLTD---GAEVTLDTLF-KDKDRPGNRPFHDWMSIADFQDFADQW 808 + LL + LK T A V LD ++ + D ++ + D + Sbjct: 958 LYCQLLKQSVARLKGDATALQIRASVKLDFVYQGEGAMTAANRHEDGFTVLNRLDLKEGA 1017 Query: 809 FAAALGRPVELTVFDSPRDIPHHRKLTVT 837 R + ++ I +RK+ + Sbjct: 1018 CEPIQARIPATFIDETRLRIDLYRKMALA 1046 >UniRef50_A1U089 DEAD/DEAH box helicase domain protein n=1 Tax=Marinobacter aquaeolei VT8 RepID=A1U089_MARAV Length = 2213 Score = 127 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 86/872 (9%), Positives = 189/872 (21%), Gaps = 133/872 (15%) Query: 12 GSPVYEVAFCNDCNEP------------HLLARDKKGKLVQWENKGGDEFS--------- 50 G + C +C E + G ++ + + E Sbjct: 535 GKRQLPIVHCTECGEVAWVGLRDPDMDSVIGQHGINGMQLRDDVREIYEAWGFERAPSPS 594 Query: 51 --LQDEVPVEHDATEEKVEKENSFQPPLIIAAGETSEAGYTLQRLDRQTRRIGVINNDSI 108 + D +++ + A+ G + + + ++S Sbjct: 595 LVILSPWRDGDDPISASGQQQLDAVKWHLAASSLVVREGPGPCPITDEKTFPVKMVHESY 654 Query: 109 PLIINDIEQVCSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEG 168 L C R A + + Sbjct: 655 SLENGARRGTRRCPHCHENESLMFIGSRAATISSVAIDEVFGSVLNNDP----------- 703 Query: 169 VGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPN 228 +L+ FTDS Q + A LR ++ ++ Sbjct: 704 -----------KLLAFTDSVQDASHRAGFFSARTYHFTLRTALQHVIDEAGDEGVPLPEV 752 Query: 229 ANADLEKLAARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSR 288 ++ A A++ +P + + + K + R Sbjct: 753 GQRLIDYWGADRPGRPGTAKQALETLIPTDLREYDDYVDFRNRLEAREIPPKLLGDITRR 812 Query: 289 TWTEMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLE 348 E +E +L + ++ G +L E + + R P + LE Sbjct: 813 LTWEATSEFSL-------MLTHGRTMELHASATLGWVPELVEETVSQLKARLPAISPKLE 865 Query: 349 TQGLVQVGYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELK--N 406 + W L + R + Sbjct: 866 AV------------SSEDITLW------------VLGILHRQRERGGLYHPYLGSYAAQR 901 Query: 407 WIGSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLM-----LGAGFKTVNAA 461 + G K + E+ P+ P++ + +L + A Sbjct: 902 FWGKYPFGKTIAGRETYPPQGKYK---PRLMCTQPNKDHDHILAPAKPHQMLPWHLKWAR 958 Query: 462 TIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFK 521 + + L L +E I ++ K Sbjct: 959 KVMELPGIDDATLVDLVNAFLKTGDSTG---LLREVHADGEQHFYAINDQAARLYPNGEK 1015 Query: 522 GLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLI 581 + P + + EG + + + Sbjct: 1016 LIAPNRGYKLFRPEWEARLWTGA-------------ASLAYLDDEGYYEPGELTDREGYY 1062 Query: 582 AQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNG----QLNVLNCST 637 + + EH+ ++ ++ E F G NVL ++ Sbjct: 1063 RTRYRKGALRRVF-----------AHEHTGLLATAEREALEYSFNKGSHADDPNVLTATS 1111 Query: 638 TMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLG---------YKTVELNEFIL 688 T+EMG+D + T S T + R G + +L + Sbjct: 1112 TLEMGIDIGDLSTTMLCSIPPTTAS--YLQRIGRAGRKTGTALVLSVINQRPHDLFFYSR 1169 Query: 689 PAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRY 748 P + + F + I + T Sbjct: 1170 PNALISGDIEPPGCWLDASAVLVRQYLAFCFDQGVREGILADLPATGKQLIDEIIETKSG 1229 Query: 749 LQNPVALALLGS---ILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFA 805 + +L + + + A+ F + R + + A + Sbjct: 1230 HIPELLAWVLENEQTLQTRFLERFKSNAKDDTQQRFLAESR--TERLRERIEKAAAEFRQ 1287 Query: 806 DQWFAAALGRPVELTVFDSPRDIPHHRKLTVT 837 + R + + + L + Sbjct: 1288 QRLLLENAKRRLRAQKEKLDGAVDNADLLEIE 1319 >UniRef50_B3DY76 Transcription-repair coupling factor mfd (Superfamily II helicase) n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DY76_METI4 Length = 1060 Score = 127 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 48/370 (12%), Positives = 104/370 (28%), Gaps = 23/370 (6%) Query: 458 VNAATIDIINTWLKEAWAQLTGPLAVLKPDG-----NRFYLPKEHMTFSLITDAWICPVT 512 N+ +I+ + + G +L D + +E L + W Sbjct: 619 KNSEEKEILAGLKEGTVDVVVGTHRLLSADVEFKDLGLIVIDEEQRFGVLQKEKWKEK-- 676 Query: 513 NKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKAR 572 + +D TP +P + I + ++ A R Sbjct: 677 FRFIDVLLLSATP-IPRTLYLAMAGARDMSLIETPPPNRFPIETIVGPYDERVIRQAIER 735 Query: 573 DWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNV 632 + + + R+ + + L+ + F G+++V Sbjct: 736 ELNRGGQVYFLHNRIRTIEKVASRLKSLLPSIKIDIGHGRMKKHELEEVMERFVEGKIDV 795 Query: 633 LNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKA 692 L ++ +E G+D T+ + L V RS L Sbjct: 796 LLATSIIENGLDIPNANTIIIDRADLFGLADLYQLR-GRVGRSNQKAYAYLLLPRDLFIQ 854 Query: 693 TNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNP 752 ++A +R+K +Q H QL + F D+ + I + + Sbjct: 855 SDAKKRIKAMQEHSQLG---TGFQIALRDLEIRGAGNLLGTSQSGHIASIGFE------- 904 Query: 753 VALALLGSILRPLKTKLTDGAEVTLDT----LFKDKDRPGNRPFHDWMSIADFQDFADQW 808 + LL ++ ++ K T+ + L + + + + Q+ + Sbjct: 905 LYCKLLKKAIQKIQGKETEPLIDCRLSLDFLLPEPGGGRHALAYIPFSYMERRQERLHAY 964 Query: 809 FAAALGRPVE 818 A E Sbjct: 965 RQLAEASQPE 974 >UniRef50_A2RH86 Transcription-repair coupling factor (TRCF) n=71 Tax=Streptococcaceae RepID=A2RH86_LACLM Length = 1180 Score = 127 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 45/315 (14%), Positives = 85/315 (26%), Gaps = 14/315 (4%) Query: 516 LDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWV 575 +D TP +P + L + + A R+ Sbjct: 775 VDVLTLTATP-IPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVMETNYGVVRDAILREIS 833 Query: 576 SHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNC 635 + + ++ E R Q + +L++ F G +VL Sbjct: 834 RGGQVYYVYNRVDTIEQKVSQLEELIPEARIGFIHGQMTEVQLENTLLAFIAGDYDVLVA 893 Query: 636 STTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNA 695 +T +E GVD TL + + L V RS + + Sbjct: 894 TTIIETGVDIPNSNTLFIENADMMGLSQLYQLR-GRVGRSNRVAYAYFMYRPEKILSEVS 952 Query: 696 VERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVAL 755 +R++ I+ +L S F D+ + I V + D Y Q Sbjct: 953 EKRLEAIKGFTELG---SGFKIAMRDLSIRGAGNLLGSEQSGFIDSVGF-DLYSQ----- 1003 Query: 756 ALLGSILRPLKTKLTDGAEVTLD-TLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALG 814 LL + ++ +L D P + I ++ Sbjct: 1004 -LLEEAIHTKLGTSKQKRTSNVEISLELDAFIPAYYISDERQKIEIYKRIRQIDSREIYE 1062 Query: 815 RPVELTVFDSPRDIP 829 ++ + D + P Sbjct: 1063 -ELQEELVDRFGEYP 1076 >UniRef50_UPI00016C0762 transcription-repair coupling factor n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0762 Length = 1175 Score = 127 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 45/318 (14%), Positives = 90/318 (28%), Gaps = 14/318 (4%) Query: 513 NKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKAR 572 +D TP +P + + + + + D A R Sbjct: 774 RTEVDALTLTATP-IPRTLQMSLIGIRDMSVIEEAPSERRAVQTYVLEESDDFIKDAINR 832 Query: 573 DWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNV 632 + + + ++ + A Q S L++ + F+N ++NV Sbjct: 833 EINREGQVYFLSXRVQNIVEKAAQLSNMVPXAKVALAHGQMSVRELEAIMERFENKEINV 892 Query: 633 LNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKA 692 L C+T +E G+D T+ + L V RS L + Sbjct: 893 LVCTTIIETGLDIANANTIIIVDADKMGLSQLYQLR-GRVGRSDKQAYAYLLYKRDXILS 951 Query: 693 TNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNP 752 A +R+ I+ QL + F D+ + + + + Y Sbjct: 952 EVAEKRLNAIKQFTQLG---AGFKIAMRDLEIRGAGDLLGASQSGHMAKIGYE------- 1001 Query: 753 VALALLGS-ILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAA 811 + +L IL + + T + + N + + ++ A Sbjct: 1002 LYSKMLREAILIEQGGGIEEEKIETTIEIKINAFISSNYIKDEIQKLDIYKKIASIRTED 1061 Query: 812 ALGRPVELTVFDSPRDIP 829 V + D D P Sbjct: 1062 DY-LNVMDEITDRYGDPP 1078 >UniRef50_Q55750 Transcription-repair-coupling factor n=43 Tax=Cyanobacteria RepID=MFD_SYNY3 Length = 1199 Score = 127 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 46/314 (14%), Positives = 92/314 (29%), Gaps = 13/314 (4%) Query: 516 LDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWV 575 +D TP +P + + + + I A + Sbjct: 795 VDVLTLTATP-IPRTLYMSLSGIREMSLITTPPPSRRPIKTHLSPYNPEVIRTAIRNELD 853 Query: 576 SHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNC 635 + + ++ ++ + R A Q L+S F +G+ ++L C Sbjct: 854 RGGQVFYVVPRIEGIEELGGQLRQMVPSARIAIGHGQMEESELESTMLAFNDGEADILVC 913 Query: 636 STTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNA 695 +T +E G+D RV T+ Q + L V RS L A Sbjct: 914 TTIIEAGLDIPRVNTIIVEDAQKFGLAQLYQLR-GRVGRSGIQAHAWLLYPNQKQLTEKA 972 Query: 696 VERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVAL 755 R++ +Q QL S + D+ + ++ + Y + Sbjct: 973 RLRLRALQEFSQLG---SGYQLATRDMEIRGVGNLLGAEQSGQMEAIGYE-------FYM 1022 Query: 756 ALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGR 815 +L ++ ++ + E T L P + +A ++ L Sbjct: 1023 EMLQDAIKEIQGQEIPKVEDTQIDLPLTAFIPSDYIPDLEEKMAAYRRITSIESTDEL-P 1081 Query: 816 PVELTVFDSPRDIP 829 + L D +P Sbjct: 1082 KIALDWGDRYGMLP 1095 >UniRef50_P37474 Transcription-repair-coupling factor n=170 Tax=Bacilli RepID=MFD_BACSU Length = 1177 Score = 127 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 47/326 (14%), Positives = 86/326 (26%), Gaps = 14/326 (4%) Query: 516 LDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWV 575 +D TP +P + L + + A R+ Sbjct: 772 VDVLTLTATP-IPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELA 830 Query: 576 SHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNC 635 + D + + A + + L++ F G+ +VL Sbjct: 831 RGGQVYFLYNRVEDIERKADEISMLVPDAKVAYAHGKMTENELETVMLSFLEGESDVLVS 890 Query: 636 STTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNA 695 +T +E GVD V TL + L V RS A Sbjct: 891 TTIIETGVDIPNVNTLIVFDADKMGLSQLYQLR-GRVGRSNRVAYAYFTYRRDKVLTEVA 949 Query: 696 VERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVAL 755 +R++ I+ +L S F D+ + I V + D Y Q Sbjct: 950 EKRLQAIKEFTELG---SGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGF-DLYSQ----- 1000 Query: 756 ALLGSILRPLKTKLTDGAEVTLDT-LFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALG 814 +L + K + + + D P I ++ F Sbjct: 1001 -MLKEAIEERKGDTAKTEQFETEIDVELDAYIPETYIQDGKQKIDMYKRFRSVATIEEKN 1059 Query: 815 RPVELTVFDSPRDIPHHRKLTVTFED 840 ++ + D + P + T + Sbjct: 1060 -ELQDEMIDRFGNYPKEVEYLFTVAE 1084 >UniRef50_Q03SZ8 Transcription-repair coupling factor (Superfamily II helicase) n=34 Tax=Lactobacillaceae RepID=Q03SZ8_LACBA Length = 1180 Score = 127 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 44/314 (14%), Positives = 86/314 (27%), Gaps = 13/314 (4%) Query: 516 LDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWV 575 +D TP +P + L + I Q A R+ Sbjct: 768 VDVLTLTATP-IPRTLHMSMLGVRDLSVIETPPANRFPIQTYVMEQNAGAIQDGIRREMQ 826 Query: 576 SHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNC 635 + + ++ R + + +L+ F G +VL Sbjct: 827 RGGQVFYLHNRVDDIEKTVGQIQVLVPEARVGYIHGKMTEAQLEGVLFDFLRGDYDVLVT 886 Query: 636 STTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNA 695 +T +E G+D TL + + L + RS + Sbjct: 887 TTIIETGIDIPNANTLFVENADRMGLSQLYQLR-GRIGRSNRVAYAYFTYQPNKVLTEVS 945 Query: 696 VERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVAL 755 +R++ I+ +L S F D+ + I V Y D Y Q Sbjct: 946 EKRLEAIKDFTELG---SGFKIAMRDLSIRGAGNLLGKQQHGFINSVGY-DLYTQ----- 996 Query: 756 ALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGR 815 +L + + + T T L + P + + I ++ + Sbjct: 997 -MLSDAVAKKRGQKTQPKTDTTIELGVEAYLPSDYIEDEQQKIEMYKRIRQLEDDDEVS- 1054 Query: 816 PVELTVFDSPRDIP 829 ++ + D + P Sbjct: 1055 EIQADLIDRFGEYP 1068 >UniRef50_B1I198 Transcription-repair coupling factor n=2 Tax=Peptococcaceae RepID=B1I198_DESAP Length = 1176 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 42/286 (14%), Positives = 80/286 (27%), Gaps = 12/286 (4%) Query: 516 LDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWV 575 +D TP +P + + + + + ++ A R+ Sbjct: 773 VDVITLTATP-IPRTLYMSLVGIRDTSLLETPPLDRFPVQTFVVEEDPVLIREAVGRELA 831 Query: 576 SHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNC 635 + + + E R A Q ++L+ F G +VL C Sbjct: 832 RGGQVYFVHNRVFELDRVAGWLQELVPEARIAVAHGQMREDQLEQVMLDFVAGAYDVLVC 891 Query: 636 STTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNA 695 +T +E G+D V TL + + L V RS A Sbjct: 892 TTIIETGLDITNVNTLVVKEADQLGLAQLYQLR-GRVGRSNRLAYAYFTFRRDRLLGEAA 950 Query: 696 VERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVAL 755 +R++ I+ S F D+ + I+ V + + Sbjct: 951 EKRLRAIRDFTDFG---SGFRLAKRDLEIRGAGNLLGTEQHGNISVVGFE-------MYC 1000 Query: 756 ALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADF 801 LL +R LK + T+ + P + + + Sbjct: 1001 RLLEESVRELKGEAPPEEFETVVEVPVTAFLPDDYIPDPEQKVQFY 1046 >UniRef50_Q83N19 Transcription-repair coupling factor n=4 Tax=Bacteria RepID=Q83N19_TROWT Length = 1291 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 43/324 (13%), Positives = 92/324 (28%), Gaps = 16/324 (4%) Query: 516 LDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWV 575 +D TP +P + + + + T I D A R+ + Sbjct: 892 IDILAMSATP-IPRTLEMSLMGIKEISTLSTPPENRMPILTHVGPYRDKQVIAAVRREII 950 Query: 576 SHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNC 635 + + + R+ + R A+ + L+ F G+ ++L C Sbjct: 951 RGGQVFYIHNDTATISRVAQRLEQLIPEARVVSAHAKLAERMLEKTVIDFWEGKYDILVC 1010 Query: 636 STTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNA 695 +T +E G+D T+ S + H V R F A Sbjct: 1011 TTIIETGLDNANANTIIIDSAENYGLSQL-HQLRGRVGRGTKRAYA--YLFYTSTLKDTA 1067 Query: 696 VERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVAL 755 +R++ I + L D+ + I V + D Y++ Sbjct: 1068 YKRLEAIARNNHLGAGAQ---IAMKDLELRGAGSLLGHAQSGHIASVGF-DLYIR----- 1118 Query: 756 ALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGR 815 ++ + K + D P + + I ++ ++ A + Sbjct: 1119 -MVTDAISNFK-GEQSRTNNLRLEIPVDASIPKAYVDSERLRIELYKKISEALS-DADIK 1175 Query: 816 PVELTVFDSPRDIPHHRKLTVTFE 839 + + D ++P + Sbjct: 1176 DIGDEILDRFGNLPSQVINLLELA 1199 >UniRef50_B0MQZ9 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=B0MQZ9_9FIRM Length = 1175 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 44/329 (13%), Positives = 88/329 (26%), Gaps = 13/329 (3%) Query: 516 LDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWV 575 +D TP +P ++ + I + A ++ Sbjct: 765 VDVLTLSATP-IPRTLNMAMSGIRDMSVIETPPGDRHPITTYVVEHDRGVIAQAINKELR 823 Query: 576 SHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNC 635 + + + + S E L + + G+++VL C Sbjct: 824 RNGQVYYVHNRIESIYSCAADIHSMVPEANIGIAHGRMSEEELLNVWRRLIEGEIDVLVC 883 Query: 636 STTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNA 695 +T +E GVD TL + H V R+ + A Sbjct: 884 TTLIETGVDVPNCNTLIIENADCMGLAQL-HQLRGRVGRTNRRAYAYFTFRRGKVLSEIA 942 Query: 696 VERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVAL 755 +R+ I+ + S F D+ + + V Y D Y+ Sbjct: 943 TKRLDAIREFTRFG---SGFRIAMKDLEIRGAGSVLGQSQSGHLASVGY-DMYI------ 992 Query: 756 ALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGR 815 LL + + K + L + D P + + ++ A Sbjct: 993 KLLNEAILEQQGKAPEITPECLIDIRIDAFIPEKYISNQAQRVDCYRKIA-MIENDEDAY 1051 Query: 816 PVELTVFDSPRDIPHHRKLTVTFEDGQVL 844 V + D D+P + + + + Sbjct: 1052 DVTDELIDRYGDVPRAVEGLIEVAKLRRI 1080 >UniRef50_A8F4U5 DEAD/DEAH box helicase domain protein n=1 Tax=Thermotoga lettingae TMO RepID=A8F4U5_THELT Length = 939 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 52/397 (13%), Positives = 117/397 (29%), Gaps = 26/397 (6%) Query: 451 LGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLK-----PDGNRFYLPKEHMTFSLITD 505 +I++ + + G A+L+ D + +E + Sbjct: 494 RLLDRSISTIMKKEILDGLFRGKIDVIIGTHALLQNNVRFSDLGLVIIDEEQSFGVEQKE 553 Query: 506 AWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYA 565 + TN ++ TP +P + + + + + Sbjct: 554 KFKQLRTN--VNVLSLSATP-IPRTLHMAMTGMKDLSVINTPPIGRLPVITYVAKYSNQL 610 Query: 566 EGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMF 625 A R+ +I + D+ + + + +L + F Sbjct: 611 VRGAVLREINRGGQVIYVHNRIHDIQDVYQNLQHIIPEAKIVLAHGKMGIRKLTEAVRSF 670 Query: 626 KNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNE 685 +V+ C++ +E G+D T+ + L V RS Sbjct: 671 YEHDSDVILCTSILESGIDIPNANTIIVDDSHRYGLAQLYQLR-GRVGRSTKRA--FAYF 727 Query: 686 FILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYT 745 + A++R++ I KQL G S F D+ + I V Sbjct: 728 LHDSEISEKALQRLQAI---KQLTGSGSGFQLALRDMQIRGVGSVFGFEQHGNINDVGLN 784 Query: 746 DRYLQNPVALALLGSILRPLKTKLTDGAEVTLDTL----FKDKDRPGNRPFHDWMSIADF 801 + L ++ L+ +K + ++ ++ +DT + P + + + Sbjct: 785 -------LYLEIMNQQLKGIKEEKSESRKLFVDTEMEGIPGELVIPPDYVESPLERMRIY 837 Query: 802 QDFADQWFAAALGRPVELTVFDSPRDIPHHRKLTVTF 838 + FA + + VE + D +P+ + V Sbjct: 838 RRFASCETVSEIDGMVE-ELHDRFGKLPNQALMLVEL 873 >UniRef50_C4WBZ1 Transcription-repair coupling factor n=3 Tax=Staphylococcus RepID=C4WBZ1_STAWA Length = 1169 Score = 126 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 51/317 (16%), Positives = 91/317 (28%), Gaps = 17/317 (5%) Query: 516 LDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWV 575 +D TP +P + L + + Q A R+ Sbjct: 768 VDVLTLTATP-IPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELS 826 Query: 576 SHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNC 635 + + +++ A Q + L+ F N + ++L Sbjct: 827 RDGQVFYLYNKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVT 886 Query: 636 STTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNA 695 +T +E GVD TL + L V RS A Sbjct: 887 TTIIETGVDVPNANTLIIEEADRFGLSQLYQLR-GRVGRSSRIGYAYFLHPANKVLNETA 945 Query: 696 VERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVAL 755 ER++ I+ +L S F D+ + I V + D Y Q Sbjct: 946 EERLQAIKEFTELG---SGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGF-DLYSQ----- 996 Query: 756 ALLGSIL---RPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAA 812 +L + R +K + D +V ++ L D P ++ I ++ Sbjct: 997 -MLEEAVNEKRGIKEETPDVPDVEVE-LNLDAYLPAEYIQNEQAKIEIYKKLRKVESEEQ 1054 Query: 813 LGRPVELTVFDSPRDIP 829 L ++ + D D P Sbjct: 1055 L-MDIKDELIDRFNDYP 1070 >UniRef50_Q1GBP3 Transcription-repair coupling factor n=2 Tax=Lactobacillus delbrueckii subsp. bulgaricus RepID=Q1GBP3_LACDA Length = 1158 Score = 126 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 45/325 (13%), Positives = 87/325 (26%), Gaps = 13/325 (4%) Query: 516 LDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWV 575 +D TP +P + + + I Q A R+ Sbjct: 757 IDVLTLTATP-IPRTLHMSMIGIRDLSVMETPPQNRYPIQTYVLEQLPGTVKEACQREMQ 815 Query: 576 SHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNC 635 + + R+ + R A Q S +L+ F + + ++L Sbjct: 816 RGGQVFYLHNRVGDIEETVARLEQLLPEARIAYAHGQMSENQLEDILSRFLDREFDILVT 875 Query: 636 STTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNA 695 +T +E G+D V T+ + L + RS Sbjct: 876 TTIIETGIDMPNVNTMIIEDADHYGLSQLYQLR-GRIGRSARLAYAYFLYQPNKVLTEVG 934 Query: 696 VERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVAL 755 +R+ I+ +L + F D+ + I V Y D Y Q Sbjct: 935 EKRLDAIRDFTELG---AGFKIAMRDLSIRGAGNMLGAQQHGFIDSVGY-DLYSQ----- 985 Query: 756 ALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGR 815 +L ++ + K L + P + I ++ + Sbjct: 986 -MLADAIKERQGKKPVKKSNAEVDLGLEAYIPEDYIADQEQKIEFYKK-IKGIGSLQNRE 1043 Query: 816 PVELTVFDSPRDIPHHRKLTVTFED 840 +E + D D P + + Sbjct: 1044 DIEDELLDRFGDYPAAVENLLNVAS 1068 >UniRef50_B8FZB7 Transcription-repair coupling factor n=2 Tax=Desulfitobacterium hafniense RepID=B8FZB7_DESHD Length = 1197 Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 50/358 (13%), Positives = 98/358 (27%), Gaps = 19/358 (5%) Query: 516 LDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWV 575 +D TP +P + + + + A R+ Sbjct: 796 VDVLTLSATP-IPRTLHMSLVGVRDLSIIETPPEDRFPVQTYVAEFRPDVVREAIRREIQ 854 Query: 576 SHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNC 635 + + + + R Q S + L+ F + +VL C Sbjct: 855 RGGQVFFVHNRVEDMEQVVHFLSQLVPEARYGIAHGQMSEKELEQEMLAFLEHESDVLVC 914 Query: 636 STTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNA 695 +T +E G+D V TL G + L V RS A Sbjct: 915 TTIIETGLDMPNVNTLIIDEADRLGLGQLYQLR-GRVGRSNRRAYSYFLYKPQKVLTEVA 973 Query: 696 VERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVAL 755 +R+ I+ + S D+ + + + + + Sbjct: 974 EKRLAAIREFTEFG---SGLKIAMRDLEIRGAGNLIGAQQHGHLAALGFE-------LYS 1023 Query: 756 ALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGR 815 +L ++ LK + + T + D P + A +Q L Sbjct: 1024 QMLKEAVQELKGEQVEEKIETSIEVQVDAYLPDIYIGERQLKAALYQRMVAIDNEEDLSM 1083 Query: 816 PVELTVFDSPRDIPHHRKLTVTFEDGQVLKIRF-DQGMGYWRINFSSQWHYFDFRDDV 872 ++ + D P + + +++I++ GM +I Q F F D Sbjct: 1084 MID-ELIDRFGTPPREVENLLK-----IVRIKWMASGMKIEQIQQLKQQMVFRFAADP 1135 >UniRef50_A5WFY6 Transcription-repair coupling factor n=21 Tax=Proteobacteria RepID=A5WFY6_PSYWF Length = 1271 Score = 125 bits (313), Expect = 6e-27, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 86/302 (28%), Gaps = 12/302 (3%) Query: 516 LDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWV 575 +D+ TP +P ++ + I + + A R+ + Sbjct: 866 VDSLSMTATP-IPRTLNMALTGMRDMSIIATPPARRLSIKTFVMQKTNQLMKEAILRELL 924 Query: 576 SHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNC 635 + + + + E R Q + L+ + F + + NVL C Sbjct: 925 RGGQVYLLHNDVASIERMAENIRELVPEARVGVAHGQMNERGLEQVMQQFYHKKFNVLVC 984 Query: 636 STTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNA 695 +T +E G+D T+ H V RS L + +A Sbjct: 985 TTIIETGIDVPNANTIIIERADKFGLAQL-HQLRGRVGRSHHQAYCYLLVPSVKGLKGDA 1043 Query: 696 VERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVAL 755 +R+ I+ L + F D+ E + + + ++ + + Sbjct: 1044 KKRLTAIERANTLG---AGFMLASEDLEIRGAGEILGKQQSGNMQAIGFS-------LYM 1093 Query: 756 ALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGR 815 +L + +K L D+++ + + + A + Sbjct: 1094 DMLERATKAIKAGKEPDLNTPLSLTSDINLHSSALIPEDYVNDVPQRLLFYKRISNAEDK 1153 Query: 816 PV 817 V Sbjct: 1154 EV 1155 >UniRef50_A8L3E8 Helicase superfamily 1 and 2 ATP-binding n=1 Tax=Frankia sp. EAN1pec RepID=A8L3E8_FRASN Length = 2224 Score = 125 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 97/858 (11%), Positives = 194/858 (22%), Gaps = 123/858 (14%) Query: 16 YEVAFCNDCN--------EPHLLARDKKGKLVQWENKGGDEFSLQDEVPVEHDATEEKVE 67 +C C A D V+ ++ GD+ + H E Sbjct: 526 LPALYCRHCGRAGWGALRTLVGRAIDATETTVRRASRAGDQR----FRALLHAPGEAAAV 581 Query: 68 KENSFQPPLIIAAGETSEAGYTLQRLDRQTRRI---------GVINNDSIPLIINDIEQV 118 ++ P ET+EA L T + G + + ++ E Sbjct: 582 IADATDAPETTETTETTEATSVEGLLWLNTSTLILTTHPATDGEPDESAHIPVLTAWEDD 641 Query: 119 CSASGCGYRGMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRG 178 +A R G + + + G L Sbjct: 642 TAARAQTCPSCRQPDGIRFLGSGVSTLTSVSLSALF---------------GSAYLDTAE 686 Query: 179 RRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAA 238 ++ + FTDS Q A A +Q + LR ++ + + + D Sbjct: 687 KKTLLFTDSVQDAAHTAGFVQARSHALSLRAALFDTIDSRGPLAVADLAREAMD------ 740 Query: 239 RAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELK 298 +A + P A+ + Q + A A +A ++ R + E Sbjct: 741 ---RAGDDPVRRYRLVPPALAQWAGFQR-YWQPAGGAHERAQAQRLVERRLAFDAALEFG 796 Query: 299 ERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQ 358 A + + +++ + R + + + G + Sbjct: 797 LNARTGRTLELTGAAVAEVDTGGADALARVAARAVARARQQHSLSAENDDALGAALDDAR 856 Query: 359 GLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVR 418 + +G W +L+ ++H F G Sbjct: 857 LAAWARGVLERVRVQGGI---WHRWLESFVEHD-GNRWFLTGGRRAARGEGLPAFPPGRP 912 Query: 419 NPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLT 478 P S A+ + + L E Sbjct: 913 APTFPTTGRTSTPAATFDSITGASSWYARWAQRQLRLTARDGGLVT--RALLDEMADAGW 970 Query: 479 GPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTL 538 + + F L + S+ P ++ L L Sbjct: 971 LSRRRTETNATVFLLDPAQVVVSVAD-----------------------PELLAGGVLAL 1007 Query: 539 AQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVV 598 T + L + + R D L + Sbjct: 1008 RCDVCQTLTPGTRRTVDDLADAACLRQACPGRLRRARRGDDYYRHLYRSVDMRRV----- 1062 Query: 599 EGGFYYRTAEHSAQQSSERLQSYEKMFKNGQ----LNVLNCSTTMEMGVDTDRVMTLASR 654 EH++ + E+ F+ G NVL + T+E+G+D + T+ Sbjct: 1063 ------VAHEHTSLLPDDVRLDVERQFREGGGPAVPNVLAATPTLELGIDIGDLSTVMLG 1116 Query: 655 SQQATIPGPEWHLNDELVVRSLGYKT---------VELNEFILPAKATNAVERVKDIQIH 705 S T+ + R G + P + R + Sbjct: 1117 SLPRTVAS--YVQRVGRAGRLTGNALVLAYVKGRGHDTQRLADPLALIDGDVRPPATYL- 1173 Query: 706 KQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLG------ 759 + +++ L + + + + LL Sbjct: 1174 ----DAVEILERQYVAWLVD-RRSRGGAADPGTAATMFPEAGWAPGTWMGDLLADAHANA 1228 Query: 760 -----SILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALG 814 L + L T P + + + A Sbjct: 1229 AAYAEEFLALFGAAVRPDTADHLRTWAGVGLAPETSGAQEASGEPEAVSGLARLLRRAA- 1287 Query: 815 RPVELTVFDSPRDIPHHR 832 + ++ H R Sbjct: 1288 ----VEYRREADELGHRR 1301 >UniRef50_A8SUU5 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SUU5_9FIRM Length = 1186 Score = 125 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 46/314 (14%), Positives = 86/314 (27%), Gaps = 13/314 (4%) Query: 516 LDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWV 575 +D TP +P + + + V I + A AR+ Sbjct: 779 VDVLTLTATP-IPRTLHMSLVGIRDMSLLEEAPVDRRPIQTYVMEYDKELAREAIARELA 837 Query: 576 SHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNC 635 + N V + Q L+ F +++VL C Sbjct: 838 RQGQVYYVYNRVNDIEQFTAEVQKLVPNANVEFAHGQMDGRTLEDIMYRFNKKEIDVLVC 897 Query: 636 STTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNA 695 +T +E G+D T+ + L V RS + + A Sbjct: 898 TTIIETGLDIPNANTIIIHDANNFGLAQLYQLR-GRVGRSDRSAFAFMFYRRNKVISEVA 956 Query: 696 VERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVAL 755 +R++ I+ + L S D+ + V Y D Y Sbjct: 957 EKRLRAIKEYTDLG---SGVKISKADLNIRGAGSVLGESQSGNYEVVGY-DLY------C 1006 Query: 756 ALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGR 815 +L +R + T + D P +D++ + + + Sbjct: 1007 KMLNDAVRERRGDTVFHDYETEIDIPIDSFIPETYVKNDFIKLELCKRISLIKNEDEYND 1066 Query: 816 PVELTVFDSPRDIP 829 ++ + D DIP Sbjct: 1067 IID-ELIDRFGDIP 1079 >UniRef50_Q39PS2 Transcription-repair coupling factor n=4 Tax=Deltaproteobacteria RepID=Q39PS2_GEOMG Length = 1158 Score = 125 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 65/419 (15%), Positives = 119/419 (28%), Gaps = 32/419 (7%) Query: 451 LGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPD---GNRFYLPKEHMTFSLITDAW 507 +I+ K A + G +L+ D + L + +T Sbjct: 701 EMLSRFRTPKEQKEILEKVKKGAIDVIIGTHRLLQSDVTFKDLGLLIVDEEQRFGVTHKE 760 Query: 508 ICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEG 567 ++D TP +P + + + V + D Sbjct: 761 KLKKYKAVVDILTLTATP-IPRTLYMSMMGIRDLSIIDTPPVDRLAVKTFVARSSDDLIR 819 Query: 568 LAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKN 627 A R+ + + + + + A Q L+ F + Sbjct: 820 EAVMRELRRGGQIFFVHNRVQSIMNWAEHLRRIVPEAKIAVGHGQMDEGELEKVMLGFMH 879 Query: 628 GQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFI 687 G+ N+L C+T +E G+D TL + L V RS L Sbjct: 880 GETNLLLCTTIIESGLDIPNANTLIIDRADTFGLAQLYQLR-GRVGRSKQRAYAYLLIPG 938 Query: 688 LPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDR 747 A +++A ER+K IQ +L + F D+ + + I V + D Sbjct: 939 EGAISSDARERLKIIQELTELG---AGFRLATHDLEIRGAGDILGAKQSGNIAAVGF-DL 994 Query: 748 YLQNPVALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQ 807 Y LL ++ LK + L P + + ++ Sbjct: 995 Y------TELLEEAIQNLKGEERLERVEPEINLRIPAFVPEDYVREPNQRLIIYKKLTQA 1048 Query: 808 WFAAALGRPVELTVFDSPRDIP--------------HHRKLTVTFE--DGQVLKIRFDQ 850 + V + D +P H ++ +T DG+ L + F Q Sbjct: 1049 ESEEEVD-EVMAELVDRFGKLPLAATYLLEVMKLRIHFKRFLITMAEFDGRRLCLSFHQ 1106 >UniRef50_A5CVJ9 Transcription-repair coupling factor n=4 Tax=Bacteria RepID=A5CVJ9_VESOH Length = 1145 Score = 125 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 46/401 (11%), Positives = 111/401 (27%), Gaps = 23/401 (5%) Query: 439 GNVSHRLAKLLMLGAGFKTVNAAT--IDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKE 496 + R A II + + G +++ + L Sbjct: 669 RSFIDRFTNDPTKIATLSRFQTPKEQKIIIEQLKQGTIDIIIGTHKIIQNNIKYKNLSLI 728 Query: 497 HM---TFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPE 553 + + D TP +P ++ +L + Sbjct: 729 IIDEEHRFGVKQKEALKKLRGQSDILTMTATP-IPRTLNMALGSLRELSIIATPPAKRST 787 Query: 554 IWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQ 613 I + + A R+ + N ++ + + + + + Sbjct: 788 IQTFVQEWHNDNIKEAITREIHRGGQVFILHNDINSIDNMAENLKQIIPKLQIRIAHGKI 847 Query: 614 SSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVV 673 + L+ F + + ++L C+T +E G+D T+ + Q H V Sbjct: 848 PTRELEQIMSDFYHARFHILVCTTIIETGIDIPNANTIIINNAQNFGLAQL-HQLRGRVG 906 Query: 674 RSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSL 733 RS L + + A +R+ I+ +L S F D+ + Sbjct: 907 RSHHRAYAYLIVKSHLSLSKTAKDRLDVIKSLTELG---SGFMLANHDLEIRGAGDLLGD 963 Query: 734 MNNTRITGVHYTDRYLQNPVALALLGSILRPLKTKLTDGAEVTLDTLF-----KDKDRPG 788 + +I+ + + + LL + + + ++ P Sbjct: 964 NQSGQISEIGFN-------LYHDLLKRTIDAVYSGKKINLNDPINHEVQIDSGLPSIIPE 1016 Query: 789 NRPFHDWMSIADFQDFADQWFAAALGRPVELTVFDSPRDIP 829 F + ++ A+ L + +++ + D +P Sbjct: 1017 TYIFDVHERLVLYKRIANCQNNNEL-KALQIEMIDRFGLLP 1056 >UniRef50_A1KUB2 Transcription-repair coupling factor n=31 Tax=cellular organisms RepID=A1KUB2_NEIMF Length = 1375 Score = 125 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 41/261 (15%), Positives = 74/261 (28%), Gaps = 14/261 (5%) Query: 513 NKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKAR 572 +D TP +P +S L + + + + + A R Sbjct: 975 RANVDILTMTATP-IPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSVREAVLR 1033 Query: 573 DWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNV 632 + + + ++ +R+ R Q L+ + F + NV Sbjct: 1034 ELKRGGQVFFLHNEVDTIENMRERLETLLPEARIGVAHGQLRERELEQVMRDFLQQRFNV 1093 Query: 633 LNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKA 692 L CST +E G+D T+ H V RS L Sbjct: 1094 LLCSTIIETGIDIPNANTIIINRADKFGLAQL-HQLRGRVGRSHHQAYAYLLTPEY--IT 1150 Query: 693 TNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNP 752 +A +R+ I +L + F D+ E + + V +T Sbjct: 1151 KDAEKRLDAIAAADELG---AGFTLAMQDLEIRGAGEILGEGQSGEMIQVGFT------- 1200 Query: 753 VALALLGSILRPLKTKLTDGA 773 + +L +R LK Sbjct: 1201 LYTEMLKQAVRDLKKGRQPDL 1221 >UniRef50_A9A0K9 Transcription-repair coupling factor n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A9A0K9_DESOH Length = 1174 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 59/370 (15%), Positives = 105/370 (28%), Gaps = 29/370 (7%) Query: 513 NKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKAR 572 +D TP +P + + I +D A + Sbjct: 777 RTTVDVLSLTATP-IPRTLHMSLSGMRDISVITTPPEHRKAIKTYISEFDDAIIRTAIRK 835 Query: 573 DWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNV 632 + + + + I D + + R + L++ F N ++++ Sbjct: 836 ELERGGQIYFVHNNIHKIAFIADHLKKLVPEVRLGIVHGRLDQNTLETCMMQFVNREIDM 895 Query: 633 LNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKA 692 L C+ +E G+D T+ + L V RS L A Sbjct: 896 LVCTRIIESGIDIPSANTIFINRADMFGLAQIYQLR-GRVGRSDEQAYAYLFIPRESALG 954 Query: 693 TNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNP 752 +A +R+K + H L S F D+ A + + IT V Y D +LQ Sbjct: 955 KDARKRLKVLMEHSDLG---SGFQIAMNDLKIRGGGAALGVSQSGHITAVGY-DMFLQ-- 1008 Query: 753 VALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAA 812 L+ + LK + + I + Sbjct: 1009 ----LMEQAVAELKGE----PVTETLNPEINIPVSSFLSEAYISDIDQRMAIYRRLSRVT 1060 Query: 813 LGRP---VELTVFDSPRDIPHHRKLTVTFEDGQVLKIRFD---QGMGYWRINFSSQWHYF 866 R V+ + D +P + +LKI GMG R++ + + Sbjct: 1061 ETREITAVKTELEDRFGPLPAE-------AENLLLKIMLKTMAAGMGVKRLDLADTQMHL 1113 Query: 867 DFRDDVSFQL 876 F DD Sbjct: 1114 RFSDDRLPDA 1123 >UniRef50_B1LBI8 DEAD/DEAH box helicase domain protein n=5 Tax=Thermotogaceae RepID=B1LBI8_THESQ Length = 893 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 43/315 (13%), Positives = 91/315 (28%), Gaps = 17/315 (5%) Query: 527 LPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRS 586 +P + + + + ++ D A R+ +I Sbjct: 530 IPRTLHMALSGMKDFSVINSPPPGRKPVYVYVAEYSDDLVKGAVIREINRGGQVIYVHNR 589 Query: 587 ENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTD 646 ++ +++ A + S ++ F G ++VL C+T +E GVD Sbjct: 590 VEELPEVFEKLKRMFPELEIAVAHGKMSRRAMERIVHEFYRGNIDVLLCTTIIENGVDIP 649 Query: 647 RVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHK 706 TL + L V RS +A+ER+K ++ + Sbjct: 650 NANTLIVDDAHRYGLSQLYQLR-GRVGRSDRRAFAYFLYP--KGTPRSALERLKVLKSYT 706 Query: 707 QLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLK 766 S D+ + L + + V + +L + K Sbjct: 707 GFG---SGLQIALKDMELRGVGDVLGLEQHGNVVSVGLK-------LYNEILKETITRFK 756 Query: 767 TKLTD---GAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVELTVFD 823 + + V ++ P + + + ++ A L +E + D Sbjct: 757 ERRIEKKHSVNVEIENPPGRFFIPEDYVQNPVERLRLYRRLASSLDEEDLEEILE-EMRD 815 Query: 824 SPRDIPHHRKLTVTF 838 + P KL V + Sbjct: 816 RFGEPPEEVKLLVDY 830 >UniRef50_C9KMW0 Transcription-repair coupling factor n=3 Tax=Veillonellaceae RepID=C9KMW0_9FIRM Length = 1129 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 46/372 (12%), Positives = 94/372 (25%), Gaps = 19/372 (5%) Query: 462 TIDIINTWLKEAWAQLTGPLAVLKPDGNRFY-LPKEHMTFSLITDAWICPVTNKI---LD 517 + I L G A+L + ++ L + K+ +D Sbjct: 644 QKETIEKVRLGQVDILIGTHAILNQNKVKWKDLGLLIVDEEQRFGVKQKDKIRKLAAGID 703 Query: 518 TAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSH 577 TP +P + + + D A R+ Sbjct: 704 VLTLSATP-IPRTLHMSLVGARDMSIIETPPAERFPVQTYVVENNDTIIANAIRREMKRG 762 Query: 578 DPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCST 637 + + + D + R Q E L+ F G ++L ++ Sbjct: 763 GQVYFIYNRVDTIDRMRDHIESLVPEARIQTAHGQMPEEMLEHVMMDFYEGDYDILLATS 822 Query: 638 TMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVE 697 +E G+D T+ + + V RS A + Sbjct: 823 IVENGLDVANANTIIVYNADHFGLSQLY-QMRGRVGRSHHMAFAYFVYQADKILTETAEK 881 Query: 698 RVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALAL 757 R++ ++ +L + F D+ + I V + + L Sbjct: 882 RLQAMKEFAELG---AGFKIAMRDLEIRGAGNLLGAQQHGHIASVGFE-------MYCKL 931 Query: 758 LGSILRPLKTKL--TDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGR 815 L + L+ + + L + G I +Q A + Sbjct: 932 LEEAVERLQNGKAPEEAPPEPVIDLQTEAYIDGGFIADAMHKIEIYQRIAAIRSNEEIRS 991 Query: 816 PVELTVFDSPRD 827 ++ + D D Sbjct: 992 LLD-ELIDRFGD 1002 >UniRef50_D2R0K5 Transcription-repair coupling factor n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R0K5_9PLAN Length = 1087 Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 39/289 (13%), Positives = 81/289 (28%), Gaps = 12/289 (4%) Query: 516 LDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWV 575 +D TP +P + + + + + + + A R+ Sbjct: 701 VDVLTLSATP-IPRTLHMSLVGVRDISNLESPPEDRVPVETSVKRWNNDLIRTAVLRELN 759 Query: 576 SHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNC 635 + N I R+ + Q + L+ F G+ ++L Sbjct: 760 RGGQIYFVHNRVNDIEIIARRLNQIVPEASLRIGHGQMNETELEQVMVDFVAGKFDLLLA 819 Query: 636 STTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNA 695 +T +E G+D T+ + H V R L + NA Sbjct: 820 TTIVESGLDIPNANTIFINEAERYGLADL-HQLRGRVGRYKNRAHCYLLIDSNKSITPNA 878 Query: 696 VERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVAL 755 R++ I+ ++ + F D+ + I V Y + Sbjct: 879 ARRLRAIEEFSEMG---AGFQISMRDLEIRGAGNLLGTQQSGHIAAVGYE-------LYC 928 Query: 756 ALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDF 804 LL + +R L+ + L + P + + I ++ Sbjct: 929 QLLENAVRSLQRQPPKQQLAVDLNLPGEAFLPSDYVDDMRLKIDLYRRL 977 >UniRef50_A2BWG1 Transcriptional-repair coupling factor n=11 Tax=Prochlorococcus marinus RepID=A2BWG1_PROM5 Length = 1175 Score = 124 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 40/291 (13%), Positives = 93/291 (31%), Gaps = 12/291 (4%) Query: 516 LDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWV 575 +D TP +P + L Q + I + A +++ Sbjct: 763 IDVLTLSATP-IPRTLYMSLSGLRQMSLLNTPPPSRRSIKTYLSEIDMDVIRTAISQELD 821 Query: 576 SHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNC 635 + L + +++ + Q + L++ F NG+++++ C Sbjct: 822 RGGQIFYVLPRISDIDQAVNKLTNMFNDLKFIVAHGQMNEIDLENAMIAFNNGEVDLMIC 881 Query: 636 STTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNA 695 +T +E G+D +V T+ + L V RS L L + Sbjct: 882 TTIIESGLDIPKVNTIIIEDSHKFGLSQLYQLR-GRVGRSGIQAHAWLFYPNLNNINEAS 940 Query: 696 VERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVAL 755 +R+K I+ +L S + D+ + ++ + Y D Y++ Sbjct: 941 KQRLKAIKDFSELG---SGYQLAMKDMEIRGVGSLLGEEQSGKVNAIGY-DLYIE----- 991 Query: 756 ALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFAD 806 +L + + + + T L + P + + +++ + Sbjct: 992 -MLHEAISEINGQEIPEVKDTQVDLPINAFIPATWILNREEKLDAYKEATE 1041 >UniRef50_B9XRJ1 Transcription-repair coupling factor n=1 Tax=bacterium Ellin514 RepID=B9XRJ1_9BACT Length = 1212 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 45/306 (14%), Positives = 87/306 (28%), Gaps = 13/306 (4%) Query: 513 NKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKAR 572 K++D TP +P + T + + ++ A R Sbjct: 782 RKLVDVLTLSATP-IPRTLYLALTGARDMSTIETPPQDRLPVETIVAQYDERLIREAIQR 840 Query: 573 DWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNV 632 + + + ++ + R Q + L+ F NG+ +V Sbjct: 841 ELNRGGQVYFLHNRVGTIDAMAQKLRTLVPHARIVVGHGQMKPDDLEEVMTAFINGEADV 900 Query: 633 LNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKA 692 L +T +E G+D T+ + L V R L Sbjct: 901 LLSTTIIESGLDIPNANTMIIDRADRFGLSDLYQLR-GRVGRYKHQAYAYLLLPRHAGLL 959 Query: 693 TNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNP 752 +A +R+ ++ + L S F D+ + +IT V + Sbjct: 960 ADARKRISALKQYSTLG---SGFKIAMRDLEIRGAGNMLGPEQSGQITAVGFD------- 1009 Query: 753 VALALLGSILRPLK-TKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAA 811 + LL + LK K+ EV + F + + + A+ Sbjct: 1010 LYCQLLKQSVAALKGEKVKPRVEVQVRFDFLALNPGEESAAPERGAKAEAPKRRKAEPEI 1069 Query: 812 ALGRPV 817 + R V Sbjct: 1070 IIPREV 1075 >UniRef50_B9K8D6 Transcription-repair coupling factor n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9K8D6_THENN Length = 895 Score = 123 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 43/315 (13%), Positives = 92/315 (29%), Gaps = 17/315 (5%) Query: 527 LPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRS 586 +P + + A + + A R+ +I Sbjct: 530 IPRTLHMALSGMKDLSVINAPPPGRKPVHVYIAEYNEELVKGAVVREVNRGGQVIYVHNR 589 Query: 587 ENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTD 646 ++ + + R A + S ++ F +G ++VL C+T +E GVD Sbjct: 590 VEELPEVLENLKRMFPELRIAMAHGKMSRRVMEKVVHEFYSGNIDVLLCTTIIENGVDIP 649 Query: 647 RVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHK 706 TL + L V RS +A+ER++ ++ H Sbjct: 650 NANTLIVDDAHRYGLAQLYQLR-GRVGRSDRRAFAYFLYP--KGVPKSALERLRVLKAHT 706 Query: 707 QLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLK 766 GP S D+ + L + I + + +L + +K Sbjct: 707 ---GPGSGLQIAMKDMEMRGIGDVLGLEQHGNIISIGLK-------LYNEILRETVTKVK 756 Query: 767 TKLTDG---AEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVELTVFD 823 K + ++ ++ P + + + ++ A + + D Sbjct: 757 KKRVERKHTVQIEIENPPGRFFIPEDYISNPVERLRMYRRLASA-SEEGEIEEILEEMRD 815 Query: 824 SPRDIPHHRKLTVTF 838 + P KL + + Sbjct: 816 RFGEPPEEVKLLLDY 830 >UniRef50_B8FKE5 Transcription-repair coupling factor n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FKE5_DESAA Length = 1179 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 47/358 (13%), Positives = 88/358 (24%), Gaps = 12/358 (3%) Query: 453 AGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPK---EHMTFSLITDAWIC 509 A +I+ + G +VL+ L + + Sbjct: 720 LNRFRKAAEKKEILKGLENGDIDIVIGTHSVLQKSVQFKDLRLVIIDEEQRFGVKHKETL 779 Query: 510 PVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLA 569 +D TP +P + + + I ++ A Sbjct: 780 KKIRATVDVLALTATP-IPRTLHMSMVGIRDITVINTPPEQRRPITTYVSKFDEVIAAEA 838 Query: 570 KARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQ 629 + + + R+ R Q S L+ F N + Sbjct: 839 IRAELARKGQVFFVHNRVQSIDAMAGRLKRLVPEARVGVAHGQMSETMLEKVMIKFVNHE 898 Query: 630 LNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILP 689 +++L C+ +E G+D T+ + L V R L Sbjct: 899 IDLLVCTAIIESGLDIPAANTILINRADMFGLAQIYQLR-GRVGRGDDQAYAYLFIPDES 957 Query: 690 AKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYL 749 +A R+K + H L + F D+ + +I V Y YL Sbjct: 958 VLTRDAQRRLKVLMEHSDLG---AGFAIAMSDLQIRGGGTILGSAQSGQIAAVGYE-MYL 1013 Query: 750 QNPVAL--ALLGS-ILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDF 804 Q L G PL ++ + + + + D Sbjct: 1014 QLMETAIGQLKGEGSAPPLDPEINVDFSAFIPEWYIPDVDQRLLAYRRLSRMEKVSDV 1071 >UniRef50_Q04S99 Transcription-repair coupling factor n=6 Tax=Leptospira RepID=Q04S99_LEPBJ Length = 1176 Score = 122 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 45/318 (14%), Positives = 91/318 (28%), Gaps = 19/318 (5%) Query: 515 ILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDW 574 ++D TP +P + + + + +++ A + Sbjct: 780 LVDVLTLTATP-IPRTLHMALTGIRELSIIATPPKNRQSVETYVLEEDEDLIAEAIRNEI 838 Query: 575 VSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLN 634 + + E Q + + ++ F N + ++L Sbjct: 839 QRDGQVFYLYNRVETIEQETKYLGEIVPEVSIGILHGQMTEDEIEETLLDFYNRKYDILV 898 Query: 635 CSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATN 694 +T +E G+D V TL + + V RS L Sbjct: 899 TTTIIESGIDMPNVNTLFVKRADLFGLSQLY-QIRGRVGRSDRKAFAYLLLPKDRVVTEQ 957 Query: 695 AVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVA 754 A +R+ I +++L S F D+ + I V + D Y++ Sbjct: 958 AEKRLNTIYEYQELG---SGFKVAMRDLEIRGAGNLLGKEQSGDIMEVGF-DLYVR---- 1009 Query: 755 LALLGSILRPLKTK---LTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAA 811 +L + +K + + VTL+T F P I ++ F Sbjct: 1010 --MLEEAIARIKGEEVVVEVRTSVTLNTNFF---IPETYISDTRQKIEFYKKFEGARDLQ 1064 Query: 812 ALGRPVELTVFDSPRDIP 829 + V + + D P Sbjct: 1065 EID-EVYREMVERFGDPP 1081 >UniRef50_C8NI79 Transcription-repair coupling factor n=3 Tax=Firmicutes RepID=C8NI79_9LACT Length = 1180 Score = 122 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 58/383 (15%), Positives = 101/383 (26%), Gaps = 19/383 (4%) Query: 452 GAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPK---EHMTFSLITDAWI 508 + I K + + G +L D L + + Sbjct: 703 LLSRFRSKKEQEETIKKLRKGSVDIVIGTHRLLSKDVQFLDLGLLIVDEEQRFGVKHKER 762 Query: 509 CPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGL 568 +D TP +P + L + + Q Sbjct: 763 LKQLKSQVDVLTLTATP-IPRTLHMSMLGVRDLSVIETPPANRYPVQTFVMEQNPMTIRD 821 Query: 569 AKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNG 628 R+ + D + R Q S L++ F G Sbjct: 822 GIEREMARGGQVFYLYNRVETIEKKADELRVLVPGCRVGVIHGQMSETTLENILFQFIEG 881 Query: 629 QLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFIL 688 + +VL +T +E GVD V TL + + L V R+ L Sbjct: 882 EYDVLVTTTIIETGVDIPNVNTLFIENADYMGLSQLYQLR-GRVGRTNRIAYAYLMYQPD 940 Query: 689 PAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRY 748 + +R++ ++ +L S F D+ + I V + D Y Sbjct: 941 KVLTEVSEKRLQAMRDFTELG---SGFKIAMRDLSIRGAGNLLGKQQHGFIDSVGF-DLY 996 Query: 749 LQNPVALALLGSIL--RPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFAD 806 Q LL + + K +D V +D L D P + + I ++ Sbjct: 997 SQ------LLSEAVLKKQGKEVKSDEETVEID-LQIDAYIPASYIQDERQKIEMYKRIRS 1049 Query: 807 QWFAAALGRPVELTVFDSPRDIP 829 A ++ D D P Sbjct: 1050 IDSVEAYEELLD-DFIDRFGDFP 1071 >UniRef50_C5CIP9 Transcription-repair coupling factor n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CIP9_KOSOT Length = 1018 Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 42/292 (14%), Positives = 84/292 (28%), Gaps = 11/292 (3%) Query: 516 LDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWV 575 ++ TP +P + L + + D A R+ Sbjct: 625 VNVLTMSATP-IPRTLYMALSGLRELSMIATPPIGRTMPETYVGPVNDRLIRTAVLREIN 683 Query: 576 SHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNC 635 +I N + +++ Q + F +G+L +L C Sbjct: 684 RGGQVIYVHNRVNELNKLENKIRTLLPEVEIGVAHGQMPKRLFEKNVGDFYSGKLQMLLC 743 Query: 636 STTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNA 695 +T +E GVD TL Q + L V RS P + T Sbjct: 744 TTIIESGVDIPNANTLIVDDSQRYGLAQLYQLR-GRVGRSTRRA--FAYFLYNPKRLTPK 800 Query: 696 VERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVAL 755 + + ++ ++ +GP S D+ E + I+ + YL + Sbjct: 801 AK--ERLKALREFSGPGSGMKLAIKDMEIRGFGELLGKEQHGNISSIGL---YLYKEMVE 855 Query: 756 ALLGSI--LRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFA 805 + ++ L+ + L + D P + + ++ A Sbjct: 856 RAVAEARGIKELEPLEEKFIDTELHNIPYDMVIPEEYINDSFERMKIYRRIA 907 >UniRef50_Q3AK28 Transcription-repair coupling factor n=6 Tax=Cyanobacteria RepID=Q3AK28_SYNSC Length = 1192 Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 78/620 (12%), Positives = 167/620 (26%), Gaps = 45/620 (7%) Query: 198 MQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLAARAKQAREQA--EEYRSWGM 255 + R R + + ++ + N + + A K A + Sbjct: 477 LSSSGYVRRRRKAASRTVDPNKMRPGDFVVHRNHGIGRFKAMEKLAMSGDIRDYLVVQYA 536 Query: 256 PDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERADIRGPVLQYNHYLK 315 +++ Q L + + + W + ++A + + Y + Sbjct: 537 DGILRVAADQLGSLGRYRATSETPPQLNRMGGTAWNKAKER-AKKAVRKVALDLVKLYAE 595 Query: 316 PEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGLEKIHKSPLHWQEKGL 375 + P + E + L+ V+ + E + + G Sbjct: 596 RQQAAGFAFPTDGPWQVEMEESFPYDPTPDQLKATADVKRDMERQEPMDRLVCGDVGFGK 655 Query: 376 TLDDWRDFLKVTLDHYVRESNFTQLDDELKNW--IGSRFSSKFVRNPESKDPEDNQNRRW 433 T R K ++W + RF+ + + Sbjct: 656 TEVAIRAIFKAITAGKQVAMLAPTTVLAQQHWRTLSERFAPYPI-----------KVALL 704 Query: 434 PQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYL 493 + R + + L G V + +E + Sbjct: 705 NRFRTASERKSILDGLKQGTIDAVVGTHQLLSKGASFQELGLLVVDEEQRFG-------- 756 Query: 494 PKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPE 553 + V K +D TP +P + + + Sbjct: 757 ---------VNQKEKIKVLRKDVDVLTLSATP-IPRTLYMSLSGVREMSLITTPPPLRRP 806 Query: 554 IWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQ 613 I S + A A ++ + + ++ + E + Q Sbjct: 807 IKTHLASLDPEAMRSAIRQELDRGGQVFYVVPRVEGIEEVAAGLREMLPGLKLLVAHGQM 866 Query: 614 SSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVV 673 + L++ F G+ +V+ C+T +E G+D RV T+ + L V Sbjct: 867 AEGELENAMVAFNAGEADVMLCTTIVESGLDIPRVNTILIEDAHRFGLAQLYQLR-GRVG 925 Query: 674 RSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSL 733 RS L + + A +R++ IQ QL S + D+ + Sbjct: 926 RSGIQAHAWLFYPGNASLSDTARQRLRAIQEFAQLG---SGYQLAMRDMEIRGVGNLLGV 982 Query: 734 MNNTRITGVHYTDRYLQNPVALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFH 793 + ++ + + + + +L L ++ + E T L P + Sbjct: 983 QQSGQMETIGFD-------LYMEMLQESLAEIQGQDIPSVEDTQVDLPVTAFVPADWITD 1035 Query: 794 DWMSIADFQDFADQWFAAAL 813 IA ++ AD A AL Sbjct: 1036 PDEKIAAYRAAADCLTAEAL 1055 >UniRef50_A6DFV9 Transcription-repair coupling factor, MFD (Superfamily II helicase ) n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DFV9_9BACT Length = 1062 Score = 122 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 46/321 (14%), Positives = 92/321 (28%), Gaps = 18/321 (5%) Query: 513 NKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKAR 572 +D TP +P + L + T + + + + D +A R Sbjct: 672 RVNVDILSMSATP-IPRTLYLSMTGLRDFSTILTAPHNRKPVRTIVTKENDEIIEVAIRR 730 Query: 573 DWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNV 632 + + ++ ++ Q E L+ F +G + Sbjct: 731 ELERGGQVYYLHNRVKTIENVALKLKRQFPEANILIGHGQMDEEELEMVMNEFTDGDGQI 790 Query: 633 LNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKA 692 L C+T +E G+D T+ + L V R L A Sbjct: 791 LVCTTIIESGMDIRNANTMVIDRADRFGLSSLYQLR-GRVGRDHRQAYCYLLMPRDEAIM 849 Query: 693 TNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNP 752 NA ER+ ++ H P + F D+ + I V + Sbjct: 850 DNAKERLSALRKHT---HPGAGFKLAMRDLEIRGAGNMLGSQQSGHIAAVGFE------- 899 Query: 753 VALALLGSILRPLKTKLTDGAEVTLDTLFK------DKDRPGNRPFHDWMSIADFQDFAD 806 + LL + LK + + F ++ ++ D + Sbjct: 900 LYCQLLKKSVEDLKGSIHQDTSTSFSADFIHYGFQSIDNKIPVALTPQYIESDDVRLEMY 959 Query: 807 QWFAAALGRPVELTVFDSPRD 827 + F+ A+ +++ D +D Sbjct: 960 KRFSTAVKYNEIISLEDELKD 980 >UniRef50_C0GNR7 DEAD/DEAH box helicase domain protein n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GNR7_9DELT Length = 1483 Score = 122 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 46/331 (13%), Positives = 93/331 (28%), Gaps = 61/331 (18%) Query: 398 TQLDDELKNWIGSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKT 457 ++ DE + W +F++ P + ++S K+L + Sbjct: 676 LEILDEAELW-----FLRFIKKPPDTSQGKKDFLMLRTVS--SLSPVEQKILNVFLK--- 725 Query: 458 VNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILD 517 A + I W ++ + LA+ K R YL E PV+ +I Sbjct: 726 ERAIELFDIKAWKDSSYIKYNRHLAIRKR---RIYLDAEQA-----------PVSERITG 771 Query: 518 TAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSH 577 + L + H LA V + + A + K + Sbjct: 772 IS-------LSHYSRNHHAFLADLGRSVPADADSH--LSVSEAARAGANIVRKIISSLVE 822 Query: 578 DPLIAQLRSEN----------------VWTDINDRVVEGGFYYRTAEHSAQQSSERLQSY 621 ++ + + R HS++ +++ Sbjct: 823 KGIVREFSDDGRNSYALNPEYVVFSPEWINSRRTRAGSDPRAIIVRYHSSELETQKRADV 882 Query: 622 EKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYK-- 679 E F+ G ++ L + T+EMG+D + ++ + R Sbjct: 883 ENQFRKGDVDFLLATPTLEMGIDIGSLQSILLVGVPP--CAANYAQRAGRAGRRGQLSLT 940 Query: 680 --------TVELNEFILPAKATNAVERVKDI 702 ++ F PA+ N + I Sbjct: 941 ICYCRDHLPHDVFYFHRPAEMINGLINPPTI 971 >UniRef50_A9B116 Transcription-repair coupling factor n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B116_HERA2 Length = 1207 Score = 122 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 40/321 (12%), Positives = 83/321 (25%), Gaps = 15/321 (4%) Query: 451 LGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPK---EHMTFSLITDAW 507 + I +K + G +L D + L + + D Sbjct: 710 EMLSRFRSASQQKSITERIVKGEIDIVVGTHRILSSDIHFKQLGLVIIDEEQRFGVKDKE 769 Query: 508 ICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEG 567 +D TP +P + + I + + Sbjct: 770 RLKKLRHEIDVLTLTATP-IPRTMHMALSGIRDLSVIDTPPDDRMPIKTYVQPYNEMLVR 828 Query: 568 LAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKN 627 A R+ + + +R+ + R Q + L+ F Sbjct: 829 DAILRELGRNGQAYFVHNRVQSIYTVANRLQKLVPEARIGVGHGQMPEKALEKVILQFFE 888 Query: 628 GQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFI 687 G +V C+T +E G+D T+ + L + + Sbjct: 889 GLFDVFVCTTIIESGIDVPSANTMIIDDATTYGLAQLYQLRGRVGRSTQRGYAYMFYNPT 948 Query: 688 LPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDR 747 A A +R++ IQ +L + F D+ + IT + + Sbjct: 949 -KAMGEEAQKRLEAIQEATELG---AGFRIAMRDLEIRGTGNLLGAEQSGNITTIGFD-- 1002 Query: 748 YLQNPVALALLGSILRPLKTK 768 + LL + ++ + Sbjct: 1003 -----LYSRLLSQAVERVREE 1018 >UniRef50_B5JHN5 Helicase conserved C-terminal domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JHN5_9BACT Length = 1008 Score = 122 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 65/492 (13%), Positives = 133/492 (27%), Gaps = 78/492 (15%) Query: 335 REFMRRPKRTNSLETQGLVQVGYQGLEKIHKSPLHWQE----KGLTLDDWRDFLKVTLDH 390 +RR T LE L+ + Y L++ W + GL ++ +FL+ LDH Sbjct: 1 MYDLRRGAGTFKLEKCALLSIDYVHLKETVDWKEGWNDIPVIAGLNNEERSEFLRNILDH 60 Query: 391 YVRESNFTQLDDELKNWIGSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLM 450 + R D LK V K D W N+ + Sbjct: 61 F-RLEYAVHSDVLLKE---------SVLQENEKVFSDKLRADWAFDDLKNLFPAYLRR-K 109 Query: 451 LGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICP 510 + ++++ I + K + + + + L ++ Sbjct: 110 RLSSRSRGKSSSMVITSALGKYIRQFFAEKAPEFAFNRESYDEILDSLLALLEQAGFVVK 169 Query: 511 VTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAK 570 + A+ ++ + I + + K Sbjct: 170 QERR-----------------------DAEGQATYIYQLRLDRIIWKPGDGKKVQRDVVK 206 Query: 571 ARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFK---- 626 R + S Q + + I + R +H+ Q +E E+ F+ Sbjct: 207 IRSYKS-----FQEKPNLFFKRIYETDFSKIKALRGEDHTGQLKNELRIDREERFRADFY 261 Query: 627 ---------------NGQLNVLNCSTTMEMGVDTDRVMTLASRSQQA--------TIPGP 663 + ++ L CS TME+GVD + + R+ + Sbjct: 262 KEENGKRVLDKDRIWSDSISALFCSPTMELGVDISALSVVHMRNAPPNAANYAQRSGRAG 321 Query: 664 EWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVL 723 ++ Y + N F + V + + + ++ Sbjct: 322 RSGQAALVMTYCSSYSPHDRNFFDNKEQLVAGVVEEPKLDLINR-----ELIESHIHALV 376 Query: 724 FNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKTKLTDGAEVTLDTLFKD 783 F+D + T + + D L+ V L L K + + + Sbjct: 377 FSDIGIPDVRESVTELLDPDFPDCPLRPSVRERLSLKPAEALSFKTSVKRALETLWPKLE 436 Query: 784 KDRPGNRPFHDW 795 ++ W Sbjct: 437 QE---TWFTDSW 445 >UniRef50_C0QJ97 Mfd n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QJ97_DESAH Length = 1165 Score = 121 bits (303), Expect = 9e-26, Method: Composition-based stats. Identities = 43/321 (13%), Positives = 90/321 (28%), Gaps = 21/321 (6%) Query: 513 NKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKAR 572 +D TP +P + + V I +D A + Sbjct: 766 RSSVDVLALTATP-IPRTLHMSLTGMRDISIISTPPVDRQPIVSYISEYDDAIAAGAIQK 824 Query: 573 DWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNV 632 + + + + + + R A + + L+ F N ++++ Sbjct: 825 ELERGGQIFFIHNNIKTIFKTAENLKKLVPEVRIAVAHGRLNEASLEKAMLQFINREIDM 884 Query: 633 LNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKA 692 L C+T +E G+D T+ + L + R L Sbjct: 885 LVCTTIVESGLDIPSANTMIINRADMFGLAQIYQLR-GRIGRGEEQAYAYLFVPEEHRLT 943 Query: 693 TNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNP 752 +A +R+ + H+ L S F D+ A + + V Y D +L Sbjct: 944 RDAQKRLAALMEHRDLG---SGFQIAMKDLQIRGAGSALGGSQSGHVAAVGY-DMFL--- 996 Query: 753 VALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQ----DFADQW 808 LL + LK + +T + +++ + + Q Sbjct: 997 ---KLLDEAVADLKGQ-----PLTDPLEPEINVTLSTFISDEYVQSIEQRLTIYRRLSQM 1048 Query: 809 FAAALGRPVELTVFDSPRDIP 829 ++ + D +P Sbjct: 1049 TTVKEVAAMQQELVDRFGKLP 1069 >UniRef50_C8WGM0 Transcription-repair coupling factor n=3 Tax=Coriobacteriaceae RepID=C8WGM0_EGGLE Length = 1161 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 45/332 (13%), Positives = 84/332 (25%), Gaps = 20/332 (6%) Query: 513 NKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKAR 572 + +D TP +P + + + + + A R Sbjct: 763 RESIDVLTLSATP-IPRTMQMSLSGVRDMSLILTPPDERRPVEVHVGEWDPDVVSGAIRR 821 Query: 573 DWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNV 632 + + + RV R Q S E+L+ + F G+L+V Sbjct: 822 ELARGGQVYYVSNRVRSMEEAVRRVTAAAGEARVGVAHGQMSKEQLERVMEDFSAGELDV 881 Query: 633 LNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKA 692 L +T +E G+D TL Q + V RS Sbjct: 882 LVATTIIESGIDNPHTNTLIIEDSQRYGLAQMY-QLKGRVGRSCTQAYAYFMFPEHMELT 940 Query: 693 TNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNP 752 A R+ + H L S D+ + ++ V + Sbjct: 941 EEAAARLTALNEHTDLG---SGMRIAMRDLEIRGAGSLLGAEQSGNMSAVGFD------- 990 Query: 753 VALALLGSILRPLKTK-------LTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFA 805 + +L + + L + P + ++ A Sbjct: 991 LFAQMLNQAVSATREGDLKAMDALPPALSDITVNVPGHTYLPEEYVPDADERVLWYRRIA 1050 Query: 806 DQWFAAALGRPVELTVFDSPRDIPHHRKLTVT 837 A+ V + D D+P K + Sbjct: 1051 SAATEQAVE-DVRADLADKRPDMPQAAKNLLE 1081 >UniRef50_Q1IHV1 Transcription-repair coupling factor n=2 Tax=Acidobacteria RepID=Q1IHV1_ACIBL Length = 1182 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 64/602 (10%), Positives = 164/602 (27%), Gaps = 43/602 (7%) Query: 292 EMVNELKERADIRGPVLQYNHYLKPEVFNENGGPLK-LSEMLLFREFMRRPKRTNSLETQ 350 +++ + + ++ + + + +K +++ LL R+ + ++ Sbjct: 560 DLIQKYRSSEGVKPALNRLGTQQWAKTKARVKKAMKDMADELLKLYAARKTAKGHAFSAT 619 Query: 351 GLVQ------VGYQGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDH-----YVRESNFTQ 399 G + + E + ++ + L + + +R + Sbjct: 620 GQFEREFDDAFEFNETEDQENAIRDVRQDMESDTPMDRLLCGDVGYGKTEVSMRAAFKAV 679 Query: 400 LDDELKNWIGSRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVN 459 D++ + F K + I + + +++ + Sbjct: 680 SDNKQVAVLAPTTVLAFQHFETFKRRFSAFPVKVEMISRFRTAKQQKEIVERVNNGQVDI 739 Query: 460 AATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILDTA 519 + + + + G R + + K +D Sbjct: 740 LIGTHRVLSKDIHFPDLGLVVIDEEQRFGVRHKERLKQL--------------RKEVDVL 785 Query: 520 FKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDP 579 TP +P + L L I + ++ A ++ Sbjct: 786 TMSATP-IPRTLHMSLLGLRDMSVIETPPKDRMAIQTVVAKWDEKLIKSAIEQELDRGGQ 844 Query: 580 LIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTM 639 + +I+D++ E + Q +L+ F ++L +T + Sbjct: 845 IYFVHNRVESIYEISDKIHELVPKAKILVGHGQMGEGQLEDIMLKFMRHDADILVATTII 904 Query: 640 EMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERV 699 E G+D T+ + L V RS L A R+ Sbjct: 905 ENGLDIPLCNTMIVNRADRHGLSELYQLR-GRVGRSNRRAYAYLLVPPDRELTELARRRL 963 Query: 700 KDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLG 759 ++ L + F D+ + +I V + + +L Sbjct: 964 AALKEFSDLG---AGFKIAALDLELRGAGNLLGGEQSGQIEAVGFE-------LYTTMLE 1013 Query: 760 SILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVEL 819 +R +K ++ + T L + P + + ++ A L V Sbjct: 1014 RTVREMKGEVQEEQAETQLNLGLNIRIPPEYIKEENQRLRMYKRVAGVEGEPQLN-DVAA 1072 Query: 820 TVFDSPRDIPHHRKLTVTFEDGQVLKIRFDQGMGYWRINFSSQWHYFDFRDDVSFQLVKM 879 + D P + + + L++ ++ +G I+ F + K+ Sbjct: 1073 ELQDRYGAPPAPVRNLIQYA---RLRLLAER-IGIAGIDRQRDQINMRFTEKAQIDPEKL 1128 Query: 880 AQ 881 A+ Sbjct: 1129 AK 1130 >UniRef50_A0LNZ8 Transcription-repair coupling factor n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LNZ8_SYNFM Length = 1189 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 47/344 (13%), Positives = 97/344 (28%), Gaps = 19/344 (5%) Query: 513 NKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKAR 572 +D TP +P + + T I +++ A R Sbjct: 788 RVSVDVLTLTATP-IPRTLHMALAGIRDLSTIETPPQDRHAIETFICKYDEFTIREAVYR 846 Query: 573 DWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNV 632 + + + + + A Q L+ F +++V Sbjct: 847 ELRRSGQVFFVHNHVQSIYQTANAIGRLIPEAKIAVAHGQMKERDLEKVMLDFIRRKIDV 906 Query: 633 LNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKA 692 L C+T +E G+D T+ + L V RS L + Sbjct: 907 LVCTTIIESGLDIPAANTIIINRADKFGLAQIYQLR-GRVGRSSEQAFAYLLIPGEHLIS 965 Query: 693 TNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNP 752 +A +R++ + +L + F D+ + I V Y Sbjct: 966 RDAQKRLRALLDFSELG---AGFKIALNDLQIRGGGTILGSSQSGHIAAVGYE------- 1015 Query: 753 VALALLGSILRPLKTKLTDGAEVTLDT-LFKDKDRPGNRPFHDWMSIADFQDFADQWFAA 811 + L LL ++ +K + + + + + P + ++ A A Sbjct: 1016 LYLELLEKTIKEMKGEERETESIDPEINVPLSAFLPETFIPDKDQRLIAYKRLATLAEPA 1075 Query: 812 ALGRPVELTVFDSPRDIPHHRKLTVTFEDGQVL-----KIRFDQ 850 A+ + D P + V ++L +R D+ Sbjct: 1076 AVD-DLAGEWRDRYGPFPEGARNLVMLAKMRLLFKRLGVVRLDR 1118 >UniRef50_B4CX01 Transcription-repair coupling factor n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CX01_9BACT Length = 1082 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 46/271 (16%), Positives = 81/271 (29%), Gaps = 13/271 (4%) Query: 514 KILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARD 573 K++D TP +P + + T + L ++ A R+ Sbjct: 671 KLVDMLTLSATP-IPRTLYLSLMGAKDMSTIETPPLNRIPTETLICPYDERIIRDAINRE 729 Query: 574 WVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVL 633 + + + D++ + R Q L+ F +G +VL Sbjct: 730 LSRQGQVYFLHNRVHSIEMMRDKIKKLCPKARCVIGHGQMDEHELEDVMHEFVSGAADVL 789 Query: 634 NCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKAT 693 +T +E G+D T+ + L R + +LP + Sbjct: 790 ISTTIIESGLDIPNANTIIIDRADRFGLADLYQLR----GRVGRAQHKAYAYLLLPREMM 845 Query: 694 NAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPV 753 E + I KQ + + F D+ + I + + D Y Sbjct: 846 TQGEARRRINAIKQYSSLGAGFKIAMRDLEIRGAGNILGTAQSGHIVNIGF-DLY----- 899 Query: 754 ALALLGSILRPLK-TKLTDGAEVTLDTLFKD 783 ALL + LK K+ EV L T F Sbjct: 900 -CALLKQAIAKLKGEKVRARLEVVLRTDFVA 929 >UniRef50_D1VSM6 Transcription-repair coupling factor n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSM6_9FIRM Length = 1157 Score = 121 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 46/314 (14%), Positives = 88/314 (28%), Gaps = 13/314 (4%) Query: 516 LDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWV 575 +DT TP +P + + + + A R+ Sbjct: 766 IDTLTLSATP-IPRTLQMSMIGIRDMSVIEEPPEERFPVKTYVLEYNPLMVREAILREVE 824 Query: 576 SHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNC 635 + + E + Q + + L+ F G ++VL C Sbjct: 825 RGGQVYFVYNRVANMEYKLQELRELVPEVSFVMANGQMNEKDLEDTMLSFLRGDVDVLLC 884 Query: 636 STTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNA 695 ST +E G+D T+ + L + RS + + A Sbjct: 885 STIIETGMDVQNANTMIITDSNRLGLSQLYQLR-GRIGRSSRVAYAYFTYEKDVSISEIA 943 Query: 696 VERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVAL 755 +R+K I+ + S F D+ + I + Y D Y + Sbjct: 944 QKRLKTIKEFTEFG---SGFKIALRDLEIRGSGSILGSKQHGHIDNIGY-DLY------M 993 Query: 756 ALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGR 815 L + LK T T+ L D P + + + ++ + Sbjct: 994 KYLTQAVNKLKGIETRETIETVIDLKIDSYIPKTYIEDERLRLEIYKKISVLESEKEYSD 1053 Query: 816 PVELTVFDSPRDIP 829 ++ + D D+P Sbjct: 1054 LID-ELIDRFSDLP 1066 >UniRef50_B6BUC0 Transcription-repair coupling factor n=1 Tax=beta proteobacterium KB13 RepID=B6BUC0_9PROT Length = 1120 Score = 121 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 50/333 (15%), Positives = 97/333 (29%), Gaps = 26/333 (7%) Query: 517 DTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVS 576 D TP +P +S L + I + +S + A R++ Sbjct: 727 DFLALTATP-IPRTLSMSLEGLRDFSIISTPPQKRLSIKTMVKSFSEGIIKEALTREFNR 785 Query: 577 HDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCS 636 + I++++ + + A Q + L+ + F + N+L C+ Sbjct: 786 GGQAYFLHNDVSSIYAISEKLTKIMPDAKVAIAHGQMKEKELERVMQDFHQQRFNLLLCT 845 Query: 637 TTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAV 696 T +E G+D T+ + H V RS L + + A Sbjct: 846 TIIETGIDIPTSNTIIINNADRFGLSQL-HQLRGRVGRSHHQAFAYLLIDENRSLTSKAK 904 Query: 697 ERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALA 756 +R++ IQ + L S + D+ E + I + ++ + L Sbjct: 905 KRLEAIQYLEDLG---SGYFLAMHDLEIRGAGEILGDQQSGEIHEIGFS-------MYLK 954 Query: 757 LLGSILRPLK--------------TKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQ 802 +L + LK + A L + + S + Sbjct: 955 MLNRAVTHLKNNETLDINADYNENNDINIHAPAILTNQYCGDPNERLVIYKRLSSCESLE 1014 Query: 803 DFADQWFAAALGRPVELTVFDSPRDIPHHRKLT 835 D V ++ I H R +T Sbjct: 1015 DLQMIKEELIDRFGVAPEQTENLFIIHHIRIIT 1047 >UniRef50_Q6MB04 Probable transcription-repair coupling factor mfd n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MB04_PARUW Length = 1101 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 46/349 (13%), Positives = 98/349 (28%), Gaps = 25/349 (7%) Query: 516 LDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWV 575 +D TP +P + + + D A R+ Sbjct: 731 VDCLTLSATP-IPRTLYMSLIGARDMSVINTPPQDRLPTKTIITEPSDQIIQNALLRELS 789 Query: 576 SHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNC 635 +++R+ R Q ++ + + FK+GQ ++L Sbjct: 790 RDGQAFVIHNRVESIYSVSNRIKSLLPQARVLVAHGQMHADEIDATFHAFKSGQADILVA 849 Query: 636 STTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNA 695 +T +E GVD T+ + L V R L Sbjct: 850 TTIVENGVDIPNANTILIDRADHFGLAALYQLR-GRVGRWNRRAYAYFLVPNLRVMPELT 908 Query: 696 VERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVAL 755 +R++ + + +G S D+ + L + ++ + + + Sbjct: 909 RKRLQALS---EASGYGSGMKVAMRDLEIRGAGDILGLEQSGHVSSIGF-------HLYC 958 Query: 756 ALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALG- 814 +L ++ L+ KL T L D P + + + +Q + + + Sbjct: 959 KMLKRTIQTLQGKLPSIVTETKIELAIDARLPEDYVNEVSLRMEVYQRLGEAFSLEEVDS 1018 Query: 815 RPVELTVFDSP------------RDIPHHRKLTVTFEDGQVLKIRFDQG 851 E+ P R H + T + L + ++G Sbjct: 1019 IWSEIRDRFGPPPEPAQWLYHLTRIRVHASRFGFTLIKQEKLSLTMEKG 1067 >UniRef50_C2KSG9 Possible transcription-repair coupling factor n=2 Tax=Mobiluncus mulieris RepID=C2KSG9_9ACTO Length = 1172 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 47/375 (12%), Positives = 101/375 (26%), Gaps = 19/375 (5%) Query: 513 NKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKAR 572 +D TP +P + + T + + D A R Sbjct: 771 RTNVDVLAMSATP-IPRTLEMAITGIRGLSTLTTPPEERHPVLTYVGAYSDRQVAAAIRR 829 Query: 573 DWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNV 632 + + + + + R Q +L+ F N + +V Sbjct: 830 EMLRDGQVFYVHNRVQDIARVAKHLQSLVPEARIRVGHGQMPETQLEQVMMDFWNQEFDV 889 Query: 633 LNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKA 692 L +T +E G+D T+ + H V R + Sbjct: 890 LVSTTIVENGLDVTNANTIIIDRAERMGLSQL-HQLRGRVGRGRERGYAYFLYPGGDTLS 948 Query: 693 TNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNP 752 A ER+K I + L + D+ + I + + D Y++ Sbjct: 949 ETAFERLKTIGSNTSLG---AGMAIAQKDLEIRGAGNLLGGEQSGHIASIGF-DLYVR-- 1002 Query: 753 VALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAA 812 ++G + + + D P + + + + ++ Sbjct: 1003 ----MVGEAVAAYNGEEPAEDTAVNLEIPVDAYIPEDYLEAQSLRLDAYTRLSNATLDEE 1058 Query: 813 LGRPVELTVFDSPRDIPHHRKLTVTFEDGQVLKIR-FDQGMGYWRINFSSQWHYFDFRDD 871 + + L D P + G++ K+R + G I ++ F + Sbjct: 1059 IDQL--LDEMDDRYGRPPSSVQRL----GELAKLRNLARKYGLREIGVRGKFIRFTPVEL 1112 Query: 872 VSFQLVKMAQACKEG 886 QL ++ + Sbjct: 1113 ADSQLARLKRLHPGA 1127 >UniRef50_Q7UQN7 Transcription-repair coupling factor n=1 Tax=Rhodopirellula baltica RepID=Q7UQN7_RHOBA Length = 1181 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 81/313 (25%), Gaps = 23/313 (7%) Query: 516 LDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWV 575 +D TP +P + + + + +D A R+ Sbjct: 793 VDVLTLSATP-IPRTLHMALVGVRDISNLETPPAERMAVETKVTRWDDKMLRSAIVRELN 851 Query: 576 SHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNC 635 + D+ R+ R Q L+ F + + ++L Sbjct: 852 RGGQMYFVHNRIGDMDDLAARIKAIVPELRIGIGHGQMEEGALEQVMVDFIDHKFDMLLA 911 Query: 636 STTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNA 695 +T +E G+D T+ H V R L A Sbjct: 912 TTIIESGLDIPNANTMFIDDGNRYGLSDL-HQLRGRVGRYKHQAYCYLLVSPNKRLTPEA 970 Query: 696 VERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVAL 755 +R++ I+ + Q+ + F D+ + I V Y + Sbjct: 971 SKRLRAIEEYSQMG---AGFAISMRDLEIRGAGNLLGSQQSGHIAAVGYE-------MYC 1020 Query: 756 ALLGSILRP---LKTKLTDGAEVTLDTL------FKDKDRPGNRPFHDWMSIADFQDF-- 804 LL +R L KL+ ++ L + R + I D Sbjct: 1021 QLLEDAVRQAQKLPPKLSADVDIDLPIEAYLPEDYVPNLRHKIDLYRRMTRIEKAADVKA 1080 Query: 805 ADQWFAAALGRPV 817 + G P Sbjct: 1081 IREELEDRFGSPP 1093 >UniRef50_UPI0001C317DD transcription-repair coupling factor n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C317DD Length = 1112 Score = 120 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 52/436 (11%), Positives = 123/436 (28%), Gaps = 28/436 (6%) Query: 459 NAATIDIINTWLKEAWAQLTGPLAVLKPD---GNRFYLPKEHMTFSLITDAWICPVTNKI 515 A I + + + L G +L D + L + + + Sbjct: 658 AAEQRAAIRAFTEGSVDILIGTHRLLSRDVRPRDLGLLIVDEEQRFGVKQKELLRQLKLK 717 Query: 516 LDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWV 575 +D TP +P + + + ++ A R+ Sbjct: 718 VDVIAMSATP-IPRTLQMSIAGIRDISVIETPPEGRRPVKTYVGEYDEQLVKSAIERERS 776 Query: 576 SHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNC 635 + +R+ R Q + L+ F G+ +VL Sbjct: 777 RGGQAFFLHNRVETIDETAERLRALCPEARFEVAHGQLDEKTLEERMLRFLRGEADVLVA 836 Query: 636 STTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNA 695 ++ +E G+D + TL + V RS L A +A Sbjct: 837 TSIIESGIDIPQANTLMVERADLFGLSQLY-QIRGRVGRSRERAYAYLLYPSASALTADA 895 Query: 696 VERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVAL 755 +R+ + + +L + F D+ + + + + + + Sbjct: 896 AQRLSALSDYTELG---AGFKVAMRDLEIRGAGNLLGDEQSGHVAALGFE-------LYM 945 Query: 756 ALLGSILRPL-----KTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFA 810 +L ++ + +L + + ++ D P + ++ I + A Sbjct: 946 QMLDEAVQEMGGEDGTEELAEPVRLDVN---VDAYVPVDYIPYEQAKIDVHRRIAGAREV 1002 Query: 811 AALGRPVELTVFDSPRDIPHHRKLTVTFEDGQVLKIRFDQGMGYWRINFSSQWHYFDFRD 870 + L + + D + P + + Q +I+ + G ++F + Sbjct: 1003 SELH-ELRSELADRFGEPPEPLRNLLLL---QQARIKLGEA-GARAVSFRGGRLAVTPIE 1057 Query: 871 DVSFQLVKMAQACKEG 886 S + +M + E Sbjct: 1058 LDSRRAKRMREEIPEA 1073 >UniRef50_B0VGK6 Putative transcription-repair coupling factor n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VGK6_9BACT Length = 1127 Score = 120 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 44/316 (13%), Positives = 95/316 (30%), Gaps = 12/316 (3%) Query: 516 LDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWV 575 +DT + TP +P ++ L + + + ++ A R+ Sbjct: 731 VDTLYMSATP-IPRTLNMALSKLKEISLMQTSPKERLPVRTIITPRDMEVIKDAIRREID 789 Query: 576 SHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNC 635 + + + R AQ ++L+ F + VL Sbjct: 790 RGGQVFFIHNRVQTIETVATELRNAMPKVRFIVGHAQMPEQQLERVMADFWAKEYQVLIS 849 Query: 636 STTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNA 695 +T +E G+D T+ + + + V RS I T A Sbjct: 850 TTIIENGIDIPNANTILIDNAETFGLAQLY-QMRGRVGRSNRRAYA--YLLISKGTTTVA 906 Query: 696 VERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVH--YTDRYLQNPV 753 +R++ + + L + F D+ + I + Y +R L N + Sbjct: 907 RKRLEALTQYDYLG---AGFQVALRDLELRGAGTILGTKQSGIIQAIGFNYYNRILANAI 963 Query: 754 ALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAAL 813 G ++ L + + T D P + D + ++ ++ + Sbjct: 964 QAVEKGETIK-LFNDESPDTRRKVRTE-IDLYFPPDYIDDDEERLRIYKRLSELETLEDI 1021 Query: 814 GRPVELTVFDSPRDIP 829 +E+ + D +P Sbjct: 1022 N-NLEVELLDRFGPLP 1036 >UniRef50_Q31GG0 Transcription-repair coupling factor n=59 Tax=Gammaproteobacteria RepID=Q31GG0_THICR Length = 1159 Score = 120 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 63/520 (12%), Positives = 136/520 (26%), Gaps = 41/520 (7%) Query: 323 GGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGLE--KIHKSPLHWQEKGLTLDDW 380 +L ++ RE E + G+ E + + Sbjct: 576 DVAAELLDIYAQREARPGYAFQTDEEAYARFRAGFPFEETPDQEAAIEAVLSDMKSDKPM 635 Query: 381 RDFLKVTLDHYVRESNFTQLDDELKNWIGSRFS---SKFVRNPESKDPEDNQNRRWPQIR 437 + + E + + G + + + + + + N+ WP Sbjct: 636 DRLICGDVGFGKTEVAMR--AAFVAAYSGKQVAVLVPTTLLSQQHLENFKNRFADWP--- 690 Query: 438 NGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEH 497 + + G T I+ + G +++ D L Sbjct: 691 ----------IRIEGLSRFQSAKETKQIVEAVKNNQVDIIIGTHKIIQNDMQFGNLGLII 740 Query: 498 M---TFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEI 554 + + +D TP +P ++ L + Sbjct: 741 IDEEHRFGVRQKEQLKKLRTEVDVMTMTATP-IPRTLNMAMNDLRDLSIIATAPAKRLAV 799 Query: 555 WKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQS 614 + A R+ + + + + + + + Q Sbjct: 800 QTFVQDWNPDVVKEACLREIRRGGQIYLLFNNVDKIEQMAEEIQALLPEAKVETAHGQMH 859 Query: 615 SERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVR 674 L+ + F + + N+L C+T +E G+D T+ H V R Sbjct: 860 ERELEQVMQNFYHRRFNILVCTTIIETGIDIPTANTILIHRADKFGLAQL-HQLRGRVGR 918 Query: 675 SLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLM 734 S L +A +R+ I H L + F D+ E Sbjct: 919 SHHKAYAYLFTAGKALMTKDAEKRLTAIAKHDTLG---AGFMLASHDLEIRGAGELLGDG 975 Query: 735 NNTRITGVHYTDRYLQNPVALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHD 794 + +I + + + LL +R LK+ + L T + + D Sbjct: 976 QSGQIHEIGFG-------LYSDLLDRAVRALKSGKQPELDAKLHTGAEVELGMPALIPED 1028 Query: 795 W-----MSIADFQDFADQWFAAALGRPVELTVFDSPRDIP 829 + + ++ A AL +E+ + D +P Sbjct: 1029 YLPDIHTRLVFYKRIASAEDNNALQ-ELEVEMIDRFGLLP 1067 >UniRef50_B1C986 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C986_9FIRM Length = 1150 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 46/303 (15%), Positives = 87/303 (28%), Gaps = 12/303 (3%) Query: 516 LDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWV 575 +DT TP +P ++ + + T E +DY A R+ Sbjct: 756 VDTLTLSATP-IPRTLNMSLIGIRDLSTIEKPPKEREETETYVIEYDDYIIKDAINRELS 814 Query: 576 SHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNC 635 + S ++ + + + Q L+ F N + +VL C Sbjct: 815 RGGQVFFVYNSVKNAEKTCLKLRKLIPGLKVEFANGQMPERELEKTMFRFLNKEFDVLVC 874 Query: 636 STTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNA 695 + +E G++ T+ + + L V RS + A A Sbjct: 875 TAIVENGLNILNANTMIIKEGNNLGLSQLYQLR-GRVGRSNKNAYCYVTYEKDKALNEVA 933 Query: 696 VERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVAL 755 ++R+K I + S F D+ + T V Y + Sbjct: 934 MKRLKAINEFTKFG---SGFQIAIRDLQIRGSGNLLGANQSGHFTNVGYE-------LYT 983 Query: 756 ALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGR 815 +L L+ K + T + + + I +++ A A Sbjct: 984 KMLQEALKESKGEAQKEPVETTINIKINAYIDKKYIEDEKQRIITYKEIASIETEADKDE 1043 Query: 816 PVE 818 VE Sbjct: 1044 MVE 1046 >UniRef50_O52236 Transcription-repair-coupling factor n=6 Tax=Myxococcaceae RepID=MFD_MYXXA Length = 1201 Score = 119 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 52/338 (15%), Positives = 96/338 (28%), Gaps = 15/338 (4%) Query: 513 NKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKAR 572 +D TP +P + + I ED A R Sbjct: 801 RSQIDVLTLTATP-IPRTLHMSMSGVRDMSIIATPPQDRRAIRTFVMKYEDTVVKEAIER 859 Query: 573 DWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNV 632 + + I ++ Q +L+ F + V Sbjct: 860 EVARGGQVFFVHNRVESLPSIETQLRALVPQVSIGVAHGQMGEGQLEKVMLAFTEKKYQV 919 Query: 633 LNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKA 692 L C++ +E G+D T+ + L V RS L A Sbjct: 920 LLCTSIIESGIDISSANTMIVNRADQFGLAQLYQLR-GRVGRSKERAYAYLLVPSRRAVT 978 Query: 693 TNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNP 752 +A R++ +Q +L + F D+ + I + + D Y Q Sbjct: 979 KDAQRRLEVLQNFTELG---AGFSIASHDLEIRGAGNLLGDKQSGAIAEIGF-DMYAQ-- 1032 Query: 753 VALALLGSILRPL---KTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWF 809 LL + + K+ +VTL D + + F + Sbjct: 1033 ----LLEEAVAEMQGQPPKVQIEPDVTLPMPALIPDDYVSDVHQRLVFYKRFSQASHPDE 1088 Query: 810 AAALGRPVELTVFDSPRDIPHHRKLTVTFEDGQVLKIR 847 L + ++P ++ H +LT+ D + L++R Sbjct: 1089 VTDLRAELVDRYGEAPDEVDHLSELTLLKIDMRDLRLR 1126 >UniRef50_B6ASD7 RNA helicase n=1 Tax=Leptospirillum sp. Group II '5-way CG' RepID=B6ASD7_9BACT Length = 1717 Score = 119 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 44/255 (17%), Positives = 82/255 (32%), Gaps = 18/255 (7%) Query: 604 YRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIP-- 661 EH+AQ + + E+ F+ G L VL CS TME+GVD ++ + R+ T Sbjct: 933 IEGREHTAQVNHGDREDREERFREGVLPVLFCSPTMELGVDIAQLNAVYLRNVPPTPANY 992 Query: 662 ------GPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQF 715 ++ + F K V + + + L+ Sbjct: 993 AQRSGRSGRSGQPSIVITYCSIQSPHDQYFFRNSEKMVAGVVTPPLLDLSNE-ELILNHL 1051 Query: 716 GQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKTKLTDGAEV 775 W E L N ++ D L+ + +++ + + +E Sbjct: 1052 HS-IWLAESGQRLEPTILSN----LDGNHPDLPLRADLRMSMERD---GVFRETMKRSEW 1103 Query: 776 TLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALGRPVELTVFDSPRDIPHHRKLT 835 L TL ++ P P+ + A F + GR L + H +T Sbjct: 1104 ILSTL-QEDLVPEKAPWFSPDWLERVIRAAFSAFDRSFGRWRTLFKATKSQMDRSHAIMT 1162 Query: 836 VTFEDGQVLKIRFDQ 850 + + + D+ Sbjct: 1163 NSAASQRERDMARDR 1177 Score = 75.2 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 63/493 (12%), Positives = 129/493 (26%), Gaps = 94/493 (19%) Query: 12 GSPVYEVAFCNDCNEPHLL----ARDKKGKLVQWE---NKGGDEFSLQDEVPVEHDATEE 64 ++ V FC C + +L A K + ++ +K G+ + + Sbjct: 453 SRALFGVVFCRSCGQEYLPITMIASGKGIQEIRPREMGDKAGEGEDTTIGYFMPDPNSCW 512 Query: 65 KVEKENSFQPPLIIAAGETSEAGYT---LQRLDRQTRRIGVINNDSIPLIINDIEQVCSA 121 E P + + T ++ + QR+ + Sbjct: 513 DPEHPEEAFPAHWLDSSGTVKSSFRVKVPQRVSVDPLGRICQGEAASVSGWILPGAFRFC 572 Query: 122 SG---CGYR-GMSGKQPFRRALLGGPFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGR 177 C + K+ + + L + ++L E + LP + Sbjct: 573 LNRSKCEASFEGNAKEYSKLSTLSSE--GRSSATSILVLSSLRYMREETD------LPPQ 624 Query: 178 GRRLITFTDSRQGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLEKLA 237 ++++ FTD+RQ A A + +R ++ L ++ L Sbjct: 625 AKKILAFTDNRQDAALQAGHFNDLIQTLLIRSGLLGALQISPTQSLLEENLPSSVFPVL- 683 Query: 238 ARAKQAREQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNEL 297 G+ + QA+ L + M L Sbjct: 684 ----------------GLDPPDFMINPQAQHLARQEAE---------------RTMREVL 712 Query: 298 KERADIRGPVLQYNHYLKPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGY 357 R + + + P +LE LV V Sbjct: 713 GYR--LMVDLKRGWKINNP-----------------------------NLEQLELVTVEI 741 Query: 358 QGLEKIHKSPLHWQE-----KGLTLDDWRDFLKVTLDHYVRESNFTQ---LDDELKNWIG 409 + L++ + WQ + L+ + DF K L+ +R + LD ++ + Sbjct: 742 RSLKECCQDEALWQGTHSLLENLSSEQRMDFAKKVLE-RMRRELCIKSVLLDPIYQDQMR 800 Query: 410 SRFSSKFVRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTW 469 SR E R+ ++ S+ + G + + Sbjct: 801 SRSFHHLKDPWGVSTEERLTASRYMKLGTREDSNYYYFSVRSQVGRELRRKYGGGVSQEQ 860 Query: 470 LKEAWAQLTGPLA 482 L L Sbjct: 861 FMRVLEGLMKGLV 873 >UniRef50_A9BHZ6 DEAD/DEAH box helicase domain protein n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BHZ6_PETMO Length = 974 Score = 118 bits (295), Expect = 8e-25, Method: Composition-based stats. Identities = 56/425 (13%), Positives = 122/425 (28%), Gaps = 21/425 (4%) Query: 459 NAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNKILD- 517 D+ + K + G A+L L + K+ D Sbjct: 532 QKEKKDLFESIGKGQVDIVIGTHALLSDLLQVKNLGLVIVDEEQRFGVLQKEKFKKLSDG 591 Query: 518 --TAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWV 575 TP +P + L T V I D A R+ Sbjct: 592 VNFLMMSATP-IPRTLYMSISGLRDISTISTPPVGRLPIQTFIGKYSDKLVRTAILREKS 650 Query: 576 SHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNC 635 +I +++ ++ + A + +G +++L Sbjct: 651 RGGQVIYIHNRVQELNELHKKLRTLIPEIKIAMVHGGTPKKEFIKSINDLYDGNIDLLLS 710 Query: 636 STTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNA 695 +T +E G+D V TL + + V RS F+ + T Sbjct: 711 TTIIENGIDIPNVNTLILDDPERYGISQLY-QIKGRVGRSNRRA---FVYFLFKKEVTPQ 766 Query: 696 VERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVAL 755 + K ++ KQ N P S D+ + + + I + Y +L + + Sbjct: 767 TK--KRLEAIKQYNEPGSGLKLALRDLEIRGYGDILGIEQKGHINAIGY---HLYHEMLN 821 Query: 756 ALLGSI-LRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALG 814 +L ++ + + + P + + + ++ + + Sbjct: 822 KILFEYGIKKEEEIQKPQTYTEIKGIKGSLVIPESYISNSIERMRIYRRISVAKTVDDVE 881 Query: 815 RPVELTVFDSPRDIPHHRKLTVTFEDGQVLKIRFDQ-GMGYWRINFSSQWHYFDFRDDVS 873 + + D P + + ++K++ + G+ I + F F +DV+ Sbjct: 882 -DIRSEIRDKYGKFPEEVERLFQYA---LIKVKANMEGIK--EIEIGDTYISFKFENDVN 935 Query: 874 FQLVK 878 + K Sbjct: 936 PVIEK 940 >UniRef50_B3T2A9 Putative TRCF domain protein n=2 Tax=prokaryotic environmental samples RepID=B3T2A9_9ZZZZ Length = 1150 Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 44/367 (11%), Positives = 102/367 (27%), Gaps = 21/367 (5%) Query: 513 NKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKAR 572 K +D TP +P ++ L + + A R Sbjct: 752 RKDVDYLALTATP-IPRTLNMAIGELKDISMIATPPEGRIPVKTYISQWDKSLIHEACQR 810 Query: 573 DWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNV 632 + ++ + ++ + + + + L+ F N + ++ Sbjct: 811 EISRGGQVLFVHNRIDDIENMAETIRQIIPVGSLEIAHGRMKERSLERVMMKFYNNEFDI 870 Query: 633 LNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKA 692 L ++ +E G+D T+ H V RS L Sbjct: 871 LLATSIIESGLDIPNANTIIINRADRFGLAQL-HQLRGRVGRSERQSYAYLMIPSKHTLT 929 Query: 693 TNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNP 752 +R++ I+ + L F D+ E + +I + ++ Sbjct: 930 NEGRQRLEAIEAIEDLGV---GFILATHDLEIRGAGEILGDEQSGQIQKIGFS------- 979 Query: 753 VALALLGSILRPLKTKLTDGAEVTLD--TLFKDKDRPGNRPFHDWMSIADFQDFADQWFA 810 + +L + L+ + L P N + + ++ + Sbjct: 980 LYKDMLAQAIDSLRDGPQMQSTTISSDINLNIPALIPENYMPDVNLRLTMYKRISSTKSK 1039 Query: 811 AALGRPVELTVFDSPRDIPHH--RKLTVTFEDGQVLKIRFDQGMGYWRINFSSQWHYFDF 868 + + +E + D ++P L + Q + G+ R++ YFD Sbjct: 1040 IEI-KHIESELIDRFGELPEQTTNLLLMAHLKNQANTL----GIKKIRMDRRYGRFYFDQ 1094 Query: 869 RDDVSFQ 875 + Q Sbjct: 1095 STTIEAQ 1101 >UniRef50_A4A0Y1 Transcription-repair coupling factor n=1 Tax=Blastopirellula marina DSM 3645 RepID=A4A0Y1_9PLAN Length = 1077 Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 82/721 (11%), Positives = 179/721 (24%), Gaps = 61/721 (8%) Query: 189 QGTARMAVRMQQEAERSRLRGSVVEILSWHQRTQTSTAPNANADLE----KLAARAKQAR 244 Q R+ + + + R R V ++S Q ++ Sbjct: 365 QRAGRLYFALGRLPQGFRYREESVVLVSGDQLFHRVRRQRPATRKLGKVIDSFLDLRKGD 424 Query: 245 EQAEEYRSWGMPDQAKLSQAQAEQLEQAYQAATGGKAATILVSRTWTEMVNELKERADIR 304 G K + Q + E GG + S+ E+V + + R Sbjct: 425 LVVHLAHGIGRYRGLKKIEKQRQVEEHLEIEFHGGTKVYVPASKV--ELVQKYVGGSKSR 482 Query: 305 GPVLQYNHYLKPEVFNENGGP-LKLSEMLLFREFMRR--PKRTNSLETQGLVQVG----Y 357 P+ + + L+ LL + MRR P S +T + Y Sbjct: 483 PPLAKIGGVTWQKQKKAVEQAVHDLAGELLEVQAMRRSRPGIAFSADTLWQREFDLSFPY 542 Query: 358 QGLEKIHKSPLHWQEKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKN-WIGSRFSSKF 416 + + + + L + E + N + + Sbjct: 543 EETTDQLTAIGNIKFDMEQPRPMDRLLCGDVGFGKTEVAMRGAFKAVDNGYQVAILVPTT 602 Query: 417 VRNPESKDPEDNQNRRWPQIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQ 476 + + + +P + D++ Sbjct: 603 ILAEQHYKSLRERMAEFPF-------------TIARLSRFASAKEQRDVVKGLKDGTIDI 649 Query: 477 LTGPLAVLKPDGNRFYLPK---EHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISF 533 + G + D + L + + +D TP +P + Sbjct: 650 VVGTHRLASKDVSFQNLGLVVIDEEQRFGVEIKERLKQLRTTVDVLTMTATP-IPRTLHM 708 Query: 534 EHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDI 593 + + + + D A R+ + I Sbjct: 709 SLVGVRDISNLETPPLDRVAVETKVSRWGDELIRHAVLRELSRGGQIFFVHNRVQDIELI 768 Query: 594 NDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLAS 653 ++ + Q L+ F G+ ++L +T +E G+D T+ Sbjct: 769 AAKLQRIVPEAKIGIGHGQMGEGALEKVMTDFIAGKFDLLLATTIVESGLDIPNANTIFI 828 Query: 654 RSQQATIPGPEWHLNDELVVRSLGYKT-VELNEFILPAKATNAV-ERVKDIQIHKQLNGP 711 + L++ +R + ++L + K + ++ + Sbjct: 829 D------EANRYGLSELHQLRGRVGRYKHRAYCYMLLQPGRHLSPVAAKRLHAIEEFSHM 882 Query: 712 LSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKTKLTD 771 + F D+ + I V Y + LL + +R +K + Sbjct: 883 GAGFAISMRDLEIRGAGNILGTQQSGHIATVGYE-------LYCQLLETAVRRMKRMPSK 935 Query: 772 GAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWF-AAALGRPVELTVFDSPRDIPH 830 L + P + I ++ E+ P P Sbjct: 936 MTIDVDVDLPGETYLPDDYVNDMRQKIDLYRRMTRVASDEDLTNLKEEMQDRFGPFPDPV 995 Query: 831 HRKLTVTFEDGQVLKIRFDQGMGYWRINFSSQWHYFDFRDDVSFQLVKMAQACKEGNVAN 890 R L ++ +I+ D W+IN F + + Q + + + Sbjct: 996 ERML-------RMTEIKLDAAF--WQIN-----AIFLEEEYLVLQYSDRGRVEQLARLRG 1041 Query: 891 S 891 Sbjct: 1042 R 1042 >UniRef50_B5YFB2 Transcription-repair coupling factor n=2 Tax=Dictyoglomus RepID=B5YFB2_DICT6 Length = 1070 Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 41/321 (12%), Positives = 88/321 (27%), Gaps = 18/321 (5%) Query: 516 LDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWV 575 +D + TP +P +S + Q+ I R+ Sbjct: 699 VDILYLSATP-IPRTLSMVLSGIRQFSVLETPPENRLPIQTFVVEYNPEIIQEGIRRELE 757 Query: 576 SHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNC 635 + I + + + + + E L F +G+++VL Sbjct: 758 RGGQVYYVCNDIERLEKIKEELTKLVPEATYSIAHGKMDDEELTEVMSNFYDGKIDVLIA 817 Query: 636 STTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNA 695 +T +E G+D TL + + + L + RS L + ++ Sbjct: 818 TTIIESGIDVPNANTLFVENAEHMGLAQLYQLR-GRIGRSYKQAYAYFLHAPLKKLSLDS 876 Query: 696 VERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVAL 755 ++R++ ++ L S D+ + + I V + + L Sbjct: 877 IKRLEALKEFSSLG---SGLRLALRDLEIRGAGKILGKEQHGHINSVGFY-------LYL 926 Query: 756 ALLGSILRPLKTKLTDGAEVTLD---TLFKDKDRPGNRP---FHDWMSIADFQDFADQWF 809 LL + LK + ++ T P D Sbjct: 927 QLLEEAINELKNSQGKSEKNKVNCRITHPFPAIIPEYYISQSSDRIYYYQKLAHLEDIND 986 Query: 810 AAALGRPVELTVFDSPRDIPH 830 + + +E P + + Sbjct: 987 IDKIRKELEDIYGPIPEPVEN 1007 >UniRef50_A8RAG4 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8RAG4_9FIRM Length = 1143 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 54/406 (13%), Positives = 108/406 (26%), Gaps = 17/406 (4%) Query: 435 QIRNGNVSHRLAKLLMLGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPD---GNRF 491 + + ++ A I+ + L G +L D + Sbjct: 668 KTFTRRFENYPVRI--EVINRFIPMAKQKQIMEDIKAGSIDILIGTHRLLSKDIQFQDLG 725 Query: 492 YLPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTM 551 L + + +D TP +P + + + Sbjct: 726 LLVIDEEQRFGVEHKEKIKEFKNTVDVLSLSATP-IPRTLQMSLIGIRSLSQLNTPPQNR 784 Query: 552 PEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSA 611 + + R+ + + + ++ ++ E Sbjct: 785 MPVQTYVIEKNFAMIKEIIQRELARNGQVFYLYNNVKEIYNVARKLREALPDVEIGVAHG 844 Query: 612 QQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDEL 671 Q S E ++ F VL C+T +E G+D T+ + Sbjct: 845 QMSREDIEDVMLQFTENHYQVLVCTTIIETGIDIPNANTILIDEADHFGLAQLY-QIKGR 903 Query: 672 VVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQ 731 V RS L + A++R+K I+ QL S + D+ + Sbjct: 904 VGRSDRLAYAYLMYSPQRQLSEIAMKRLKSIKEFTQLG---SGYKIAMRDLTIRGAGDML 960 Query: 732 SLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRP 791 I V D Y++ L +I+ K E+ + D P Sbjct: 961 GPQQAGFIDTVGI-DMYIE-----MLNDAIMEEKGIKKEVKKELAKANVKVDAYIPSRFA 1014 Query: 792 FHDWMSIADFQDFADQWFAAALGRPVELTVFDSPRDIPHHRKLTVT 837 D+ I +Q L ++ + D+ +P +L Sbjct: 1015 NEDYEKITLYQRMDAITTKKELLAMMD-EIKDNYGRLPKAVQLLFE 1059 >UniRef50_Q6MGN1 Transcription-repair coupling factor n=2 Tax=Proteobacteria RepID=Q6MGN1_BDEBA Length = 1172 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 49/315 (15%), Positives = 90/315 (28%), Gaps = 14/315 (4%) Query: 516 LDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWV 575 +DT TP +P ++ + + V + A + Sbjct: 783 VDTLTLSATP-IPRTLNMALVGIRDLSLINTAPVDRLPTRTFVTKFDPETIRKAITAEIS 841 Query: 576 SHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNC 635 + + D + + R Q L+ F + +++VL C Sbjct: 842 RGGQVYFIHNRIESIYGLVDEIRQIVPEARIRVAHGQMEEHELEKAMLAFFHHEIDVLVC 901 Query: 636 STTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNA 695 + +E G+D R T+ + + L V RS L Sbjct: 902 TAIVESGMDVPRANTMFIDTAHLFGLSQLYQLR-GRVGRSKTRAYCYLMMPRNHKLDKEQ 960 Query: 696 VERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVAL 755 ER+K IQ + L S +D+ + + V Y + + Sbjct: 961 QERLKIIQENTALG---SGIKIAQYDLELRGSGNILGEEQSGHVNSVGYE-------MYM 1010 Query: 756 ALLGSILRPLKTKLTDGAEVT-LDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAALG 814 LL L K + + ++ L P + + ++ AD L Sbjct: 1011 DLLNEALAEAKGESVEDMDLDPELNLKIPALIPDAYIKDIRIRLGYYKALADITSNEDLD 1070 Query: 815 RPVELTVFDSPRDIP 829 R +E + D IP Sbjct: 1071 R-IEEELRDQFGPIP 1084 >UniRef50_A0L867 Transcription-repair coupling factor n=2 Tax=Bacteria RepID=A0L867_MAGSM Length = 1198 Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 44/335 (13%), Positives = 86/335 (25%), Gaps = 15/335 (4%) Query: 452 GAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPD---GNRFYLPKEHMTFSLITDAWI 508 I + G +L+ D + L + ++ Sbjct: 721 ILSRFRTPKEQKATIEAVGHGTIDVIVGTHRLLQTDVKFKDLGLLVVDEEQRFGVSHKER 780 Query: 509 CPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGL 568 LD TP +P ++ + + I + + Sbjct: 781 IKNLRATLDILTLTATP-IPRTLNMAMAGVRDISIIASPPADRLAIRTIITHYDKQQVRE 839 Query: 569 AKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNG 628 A R+ + + E R Q +L+ F Sbjct: 840 AILRELYRGGQVFYVHNQVQDIERKAQEIAELVPEARVGVAHGQMRENQLEKVMMEFYRQ 899 Query: 629 QLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFIL 688 N+L C+T +E GVD T+ H V RS + L Sbjct: 900 TFNILVCTTIVENGVDIPTANTIIIDRADKFGLAQL-HQLRGRVGRSKHRAYAYMLVPHL 958 Query: 689 PAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRY 748 +A +R++ ++ +L + F D+ + +I V + Sbjct: 959 RRLTKHAEKRLEALESLGELG---AGFMLATHDLEIRGAGNILGDEQSGQIKEVGFE--- 1012 Query: 749 LQNPVALALLGSILRPLKTKLTDGAEVTLDTLFKD 783 + +L + L+T G ++ T Sbjct: 1013 ----LYNQMLREAVVALQTARAQGRDLASTTPLGQ 1043 >UniRef50_C7H318 Transcription-repair coupling factor n=3 Tax=Ruminococcaceae RepID=C7H318_9FIRM Length = 1155 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 86/723 (11%), Positives = 185/723 (25%), Gaps = 62/723 (8%) Query: 143 PFYVTNIVPTVLEYCQDFTSDEGKEGVGPDSLPGRGRRLITFTDSRQGTARMAVRMQQEA 202 F + +++ ++ D D L +G + F+ + +G A + + + Sbjct: 361 EFKLKDLINVEAFAAPNWGGDLASLREDLDPLIAQGYAVTLFSGTPKGAAALTRDLTDKG 420 Query: 203 ERSR----LRGS--VVEILSWHQRTQTSTAPNANADLEKLAARAKQAREQAEEYRSWGMP 256 +R + +V++L H + A + + + R Sbjct: 421 YSVSMSRDVRPAKGIVQVLPGHLTAGCTFPFAHAAVISSRRHGLDEEAAAENKRRKKNKN 480 Query: 257 DQAKLSQAQAEQLEQAYQAATGGKAATILVSR--TWTEMVNELKERADIRGPVLQYNHYL 314 + LS + G A + + + +D+ + L Sbjct: 481 ALSSLSDIKPGDYVVHQSHGIGMYAGIQRLEVQGAIKDYLKIQYSGSDVLYVPVTQLDLL 540 Query: 315 KPEVFNENGGPLKLSEMLLFREFMRRPKRTNSLETQGLVQVGYQGLEKIHK-----SPLH 369 + +KL+++ R K + E + + + Sbjct: 541 SRYTAPGDEEKVKLAKLGGAEWQRTRAKVKKAAEEMAQELIELYARRRQAQGYAFPPDGD 600 Query: 370 WQ---EKGLTLDDWRDFLKVTLDHYVRESNFTQLDDELKNWIGSRFSSKFVRNPESKDPE 426 WQ E D+ D L T + +D L +G + +R Sbjct: 601 WQNDFETRFEYDETDDQLHATAEIKQDMEKPYPMDRLLCGDVGVGKTEVALRAAFKCVMG 660 Query: 427 DNQNRRWPQIRNGNVSHRLAKLLML--------GAGFKTVNAATIDIINTWLKEAWAQLT 478 Q H L + + + + + Sbjct: 661 GKQCALLAPTTLLAWQHYNTLLSRMEAFPVKIGMLSRFRTAKQQKETLRGLQSGSVDIVV 720 Query: 479 GPLAVLKPDGNRFYLPKEHMTFSLITDAWICPVTNK--------ILDTAFKGLTPYLPTH 530 G +L D + + +I + V +K +D TP +P Sbjct: 721 GTHRLLSKD-----VRFHDLGLVIIDEEQRFGVKHKEKLKENFIGVDMLTLSATP-IPRT 774 Query: 531 ISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIAQLRSENVW 590 ++ + T + + D A ++ + + Sbjct: 775 LNMAMSGIRDLSTIEQPPIERQPVETFVLEYNDVILAEAMKKELARGGQVYYLHNRVDNI 834 Query: 591 TDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMGVDTDRVMT 650 V + R + + E L + NG++++L C+T +E G+D T Sbjct: 835 ESTAAHVSQLVPGARVGIAHGKMTEEELNPVWQHLLNGEIDILVCTTLIETGIDVRNCNT 894 Query: 651 LASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDIQIHKQLNG 710 L + V RS A +R+ I+ Sbjct: 895 LIIEDADRMGLAQLY-QIRGRVGRSGRKAYAYFTFRRDKTLTDIAQKRLSAIREFTAFG- 952 Query: 711 PLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSILRPLKTK-- 768 S F D+ + + V Y D Y+ +LG + K + Sbjct: 953 --SGFRIAMRDLQIRGAGSLLGHSQHGHMEAVGY-DLYV------KMLGQAIARAKGEPV 1003 Query: 769 --------LTDGAEVTLDTLFKDKDRPGNRPFHD---WMSIADFQDFADQWFAAALGRPV 817 + + + + + + D D D+ P Sbjct: 1004 QRDKSECLIDLRVDAYIPEKYIADGPGRIEAYKRIAAIQTPEDAADVLDELIDRYGDPPP 1063 Query: 818 ELT 820 ++ Sbjct: 1064 SVS 1066 >UniRef50_Q2RMB9 Transcription-repair coupling factor n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RMB9_MOOTA Length = 1183 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 48/365 (13%), Positives = 90/365 (24%), Gaps = 32/365 (8%) Query: 466 INTWLKEAWAQLTGPLAVLKPDGNRFYLPK---EHMTFSLITDAWICPVTNKILDTAFKG 522 + + + G +L D N L + + +D Sbjct: 723 VEALKRGEVDIVIGTHRLLSSDVNFKNLGLVIIDEEQRFGVAHKEKLKQLRYSVDVLTMT 782 Query: 523 LTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWVSHDPLIA 582 TP +P + + + A R+ + Sbjct: 783 ATP-IPRTLHMSLAGVRDMSMIETPPEDRFPVQTYVVEYNPELVREAIRRELDRGGQVFI 841 Query: 583 QLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNCSTTMEMG 642 + + R Q E L++ F +G+ +VL +T +E G Sbjct: 842 VHNRVQDIDRFAYHIQQLVPEARVGIGHGQMGEEELENVMLDFISGRYDVLVSTTIVENG 901 Query: 643 VDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNAVERVKDI 702 +D TL + L V R+ A +R+ I Sbjct: 902 LDIQNANTLIVDESDNFGLAQLYQLR-GRVGRTNRLAYAYFTYRPDKVLGEIAEKRLAAI 960 Query: 703 QIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVALALLGSIL 762 + S + D+ + + V + + LL + Sbjct: 961 REFTAFG---SGYKIALRDLQIRGAGNFLGPEQHGHMVAVGFD-------LYCQLLEEAV 1010 Query: 763 RPLKTKLTD-------------GAEVTLDTLFKDKDRPGN----RPFHDWMSIADFQDFA 805 R LK + + E+++DT D P +H M+ D Sbjct: 1011 RKLKEQRGEGVPRPALAEPQATPIELSVDTFLGDNYIPEATLKMELYHRLMNAGDLAAVE 1070 Query: 806 DQWFA 810 D Sbjct: 1071 DIAAE 1075 >UniRef50_A1ALB0 Transcription-repair coupling factor n=8 Tax=Desulfuromonadales RepID=A1ALB0_PELPD Length = 1177 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 48/382 (12%), Positives = 102/382 (26%), Gaps = 16/382 (4%) Query: 451 LGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPD---GNRFYLPKEHMTFSLITDAW 507 I+ K + G +L+ D + L + + D Sbjct: 711 EALSRFRTPKEQKAILERLKKGEIDIVIGTHRLLQKDVAFKDLGLLIIDEEQRFGVKDKE 770 Query: 508 ICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEG 567 ++D TP +P + + + V + + + Sbjct: 771 RLKAFRAVVDVMTLTATP-IPRTLYMSMMGIRDLSIIDTPPVDRLAVKTIVARFSEELVR 829 Query: 568 LAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKN 627 A R+ + + + + A Q + L+ F + Sbjct: 830 EAIMRELRRGGQVFFVHNRVQTIAKRAELIAALVPEAKIAVGHGQMGEQELEKVMLGFMH 889 Query: 628 GQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFI 687 G+ N+L C+T +E G+D TL + L V RS L Sbjct: 890 GETNLLICTTIIESGLDIPNANTLIVDHADRFGLSQLYQLR-GRVGRSSQRGYAYLLIPG 948 Query: 688 LPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDR 747 + ++A ER+K +Q +L + F D+ + + + + + Sbjct: 949 EGSLTSDARERLKILQDISELG---AGFRIATHDMEIRGAGDMLGSRQSGTVIEIGFE-- 1003 Query: 748 YLQNPVALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQ 807 + +L + ++ + L P + ++ Sbjct: 1004 -----LYNQMLEETICRMRGEEMIEQVEPEINLKVPAFIPETYVRDTGQRLVIYKKLTQA 1058 Query: 808 WFAAALGRPVELTVFDSPRDIP 829 + V+ V D P Sbjct: 1059 ESEEDV-LDVQNEVSDRFGKYP 1079 >UniRef50_Q1AXK2 Transcription-repair coupling factor n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AXK2_RUBXD Length = 1054 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 43/326 (13%), Positives = 87/326 (26%), Gaps = 17/326 (5%) Query: 516 LDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWV 575 +D TP +P + L + ++ A R+ Sbjct: 667 VDVLTLTATP-IPRTMQMGLSGLRDISVIETPPAGRRSVLTHVGPYDEELVRRAIEREVA 725 Query: 576 SHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNC 635 + + R+ E R A Q L+ + F G+ +VL Sbjct: 726 RGGQVFFVHNRVETIEEAAQRLRELVPGVRFAVAHGQMPERALEEVMQRFLEGEADVLVT 785 Query: 636 STTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNA 695 +T +E G+D TL A + L + RS L + A Sbjct: 786 TTIVESGLDIATANTLIVERADAMGLAQLYQLR-GRIGRSTEQAYAYLFAPLGATL--EA 842 Query: 696 VERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVAL 755 R++ + +L S F D+ + I V + + L Sbjct: 843 QRRLEALLDFTELG---SGFAVAMRDLEIRGAGNLLGAEQSGHIAAVGFE-------MYL 892 Query: 756 ALLGSILR--PLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWFAAAL 813 LL + + + + D P + + ++ + A + Sbjct: 893 RLLEEAVALERGEEPERREERPVIVEVLLDAYLPPEYVADEIERVDLYRRASAAGSLAEV 952 Query: 814 GRPVELTVFDSPRDIPHHRKLTVTFE 839 + + + +P + + Sbjct: 953 D-DLAEELEERFGPLPEPARNLLGLT 977 >UniRef50_Q1Q1A4 Similar to transcription-repair coupling factor n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1A4_9BACT Length = 1092 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 50/392 (12%), Positives = 104/392 (26%), Gaps = 19/392 (4%) Query: 451 LGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPD----GNRFYLPKEHMTFSLITDA 506 + DI+ L L G +L+ D + E F + Sbjct: 632 EVLSRLKSHKEQKDILEKTLAGKIDILIGTHRLLQKDVVFKDLGLVIIDEEQRFGVAHK- 690 Query: 507 WICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAE 566 +++D TP +P + + + + + I + Sbjct: 691 ERFKKMRQVVDMLTLTATP-IPRTLHMSLMGIKDISSLNTPPLGRQSIRTQIMRFDPQRI 749 Query: 567 GLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQ-SSERLQSYEKMF 625 A + + + I + R Q + L K F Sbjct: 750 RQAILLEMNRNGQVYFVHNRVYNIERIAHTLSTIVPEARILVVHGQMMDEKLLAQRMKDF 809 Query: 626 KNGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNE 685 + + ++L +T +E G+D V T+ + H V R + + Sbjct: 810 VDHKADILVSTTIIESGLDIPNVNTIFINCADSFGLADL-HQLRGRVGRYKHHAYAYIVL 868 Query: 686 FILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYT 745 I A +RVK I+ +L + F D+ + + I V Y Sbjct: 869 PIDRPVTPEAEKRVKAIEEFAELG---AGFKIAMRDLEIRGAGNILGVEQHGHIAAVGYE 925 Query: 746 DRYLQNPVALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFA 805 + LL + + + L + P + + ++ Sbjct: 926 -------MYCRLLEIAVCKARNEPVSEPPDVSLKLNLESFLPDEYIPEYSLKMDIYRRLN 978 Query: 806 DQWFAAALGRPVELTVFDSPRDIPHHRKLTVT 837 + + + D + P K ++ Sbjct: 979 RSNTFKEID-EIRKEMIDRFGNAPQSVKNLLS 1009 >UniRef50_C7RHN4 Transcription-repair coupling factor n=3 Tax=Anaerococcus RepID=C7RHN4_ANAPD Length = 1170 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 45/380 (11%), Positives = 113/380 (29%), Gaps = 37/380 (9%) Query: 516 LDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWV 575 LD TP +P + + T + ++ A R+ Sbjct: 773 LDVLTLSATP-IPRTLQMSLSGIRDLSTLDEAPEERMPVNTYVLEYDNGIIKQAIERELN 831 Query: 576 SHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNC 635 + + N + + ++E A + S ++++ F +G++++L Sbjct: 832 RNGQVYFVYNRVNDIEKLYNHLIELVPDANIAIIHGRISPKQIEKTMLEFIDGEIDILLS 891 Query: 636 STTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNA 695 +T +E G+D V T+ G + + R + + Sbjct: 892 TTIIETGMDISNVNTIIIYDSDMMGLGQLY-QLKGRIGRGNRSSYAYFTYRTGKILSEIS 950 Query: 696 VERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVAL 755 +R+K I+ S + D+ + + + Y D Y+ Sbjct: 951 EKRLKSIRDFSDFG---SGYKIAMKDLELRGAGNLLGESQSGHVEAIGY-DLYV------ 1000 Query: 756 ALLGSILR-------PLKTKLTDGAEVTLDT----LFKDKDRPGNRPFHDWMSIADFQDF 804 L + +K K ++ +D + + ++ I + +D Sbjct: 1001 KFLQEAVEKASGKEVEIKDKSDVYIDIKVDGYIPNFYIEDQAQKIEIYNRIARIQNQED- 1059 Query: 805 ADQWFAAALGRPVELTVFDSPRDIPHHRKLTVTFEDGQVLKIRFDQGMGYWRINFSSQWH 864 D+ A + ++ + + ++ ++ F + I S Sbjct: 1060 YDELVADLIDVYGDIPIMVDN-------LMYISLIKSMADELLFSE------IREKSGNV 1106 Query: 865 YFDFRDDVSFQLVKMAQACK 884 F + +F ++A+ + Sbjct: 1107 NIYFENKDAFSFEELAEINQ 1126 >UniRef50_A7VP19 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VP19_9CLOT Length = 1149 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 45/317 (14%), Positives = 85/317 (26%), Gaps = 14/317 (4%) Query: 514 KILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARD 573 K +D TP +P ++ + + + + A R+ Sbjct: 762 KNVDVLTLSATP-IPRTLNMALSGIRDMSSLEEAPQDRHPVQTYVLEYDQAVINDAVRRE 820 Query: 574 WVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVL 633 + + R+ + + L + ++NVL Sbjct: 821 LRRGGQVYYLHNKVESIERVAARLQAQIPEAKVGFGHGKMPEGELSEVWRRVMEQEINVL 880 Query: 634 NCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKAT 693 C+T +E GVD V T+ H V RS L + Sbjct: 881 VCTTIIETGVDVPNVNTIIIEDADHMGLSQL-HQIRGRVGRSSRRAYAYLTFTRNKVLSE 939 Query: 694 NAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPV 753 + +R+ I+ + S F D+ + + V Y D YL+ Sbjct: 940 ISQKRLAAIREFTEFG---SGFKIAMRDLELRGAGNILGGEQHGHMETVGY-DMYLR--- 992 Query: 754 ALALLGSILRPLKTKLTDGAEVTLDT-LFKDKDRPGNRPFHDWMSIADFQDFADQWFAAA 812 LLG + K + E+ + P + ++ +D Sbjct: 993 ---LLGEAVSEEKGEEASSYELECLVDVQVQAHIPEGYIESLSQRLEIYRRISDIRSQDD 1049 Query: 813 LGRPVELTVFDSPRDIP 829 V + D + P Sbjct: 1050 A-MDVLDELIDRFGEPP 1065 >UniRef50_D2RLM5 Transcription-repair coupling factor n=2 Tax=Acidaminococcus RepID=D2RLM5_ACIFE Length = 1092 Score = 117 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 54/420 (12%), Positives = 109/420 (25%), Gaps = 34/420 (8%) Query: 451 LGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICP 510 +I+ + L G +L PD L + Sbjct: 632 EMLSRFRTPKQQREIMERVAEGKIDVLIGTHRILNPDVEFHDLGLLIIDEEQRFGVAQKE 691 Query: 511 VTNKI---LDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEG 567 + +D TP +P + + + + +D Sbjct: 692 KIKQRSAGIDVLTLSATP-IPRTLHLALVKGRDMSIIESPPEDRLPVETYVAEYDDGMVR 750 Query: 568 LAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKN 627 A R+ + + I + E + + + L+ F Sbjct: 751 EALEREIRRGGRIYYVHNRIEGLSRIAAHLRELVPGITIGLAHGRMTEDELEDVMLGFYQ 810 Query: 628 GQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFI 687 G +VL +T +E G+D T+ + + V RS Sbjct: 811 GDFDVLLSTTIIENGLDVPLANTIIIDGAENFGLSQLY-QMRGRVGRSSRLAYAYFLYKK 869 Query: 688 LPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDR 747 + A +R++ I+ +L + F D+ + +ITGV + D Sbjct: 870 DRVLSEVAQKRLQAIRDFTELG---AGFKIAMRDLEIRGAGNLLGAEQHGQITGVGF-DL 925 Query: 748 YLQNPVALALLGSILRPLKTK------------LTDGAEVTLDTLFKDKDRPGNRPFHDW 795 Y LL + L+ + + + + D R +H Sbjct: 926 Y------CRLLEKTINTLQNGGNPDEPVPPDPVIEMKLDAYIPDDYIDNPRYKLELYHRL 979 Query: 796 MSI------ADFQDFADQWFAAALGRPVELTVFDSPRDIPHHRKLTVTFEDGQVLKIRFD 849 + + D++ V R ++V G +++ FD Sbjct: 980 GDMKYEDRNDLMDEIIDRFGTPPTQVENLWRVAALRDVCRKLRIISVAVRPG-EIRLAFD 1038 >UniRef50_A9NE83 Transcription-repair coupling factor (Superfamily II helicase) n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NE83_ACHLI Length = 1143 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 50/315 (15%), Positives = 87/315 (27%), Gaps = 15/315 (4%) Query: 516 LDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWV 575 +DT TP +P + L + + ++ A R+ Sbjct: 743 VDTLTLSATP-IPRTLQMAMYGLKDLSMIDTPPLNRYPVQTYVVERQPALIKEAIDRELS 801 Query: 576 SHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNC 635 + + ++ + R + + R++ F + ++L Sbjct: 802 RGGQVFYLFNNTERMEAQVLKLQQLVPNARITYAHGKMTKNRIEDTLSRFVEKEFDILVS 861 Query: 636 STTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNA 695 +T +E GVD TL + L V RS L A Sbjct: 862 TTIIETGVDIPNTNTLIIHDADHLGLAQLYQLR-GRVGRSDRIAYAYLMFDGYKDVNDEA 920 Query: 696 VERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVAL 755 +R+ I+ L S F D+ + + I V D Y + Sbjct: 921 KKRLSVIEDFTDLG---SGFKIALRDLGIRGAGDILGEEQSGFIDSVGM-DLY------M 970 Query: 756 ALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQWF-AAALG 814 LL ++ T+D +F + P HD + I + A Sbjct: 971 KLLDEVMTG--KAYESPKTDTVDQVFSKRHIPPTYINHDPVRIEIHKRIASLNKMQDLED 1028 Query: 815 RPVELTVFDSPRDIP 829 EL P DI Sbjct: 1029 LKQELLDRFGPIDID 1043 >UniRef50_C1F915 Transcription-repair coupling factor n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F915_ACIC5 Length = 1189 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 52/423 (12%), Positives = 111/423 (26%), Gaps = 20/423 (4%) Query: 451 LGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPD---GNRFYLPKEHMTFSLITDAW 507 I+ L G +L D + L + + Sbjct: 720 EMLSRFRTAKEQKLIVERVEAGEIDILIGTHRLLSKDLKFHDIGLLIVDEEQRFGVRHKE 779 Query: 508 ICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEG 567 LD TP +P + + L I + ++ Sbjct: 780 RLKQLRAQLDVLTMSATP-IPRTLHMSLVGLRDMSVIETPPKDRMAIQTIVAKFDEKLVR 838 Query: 568 LAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKN 627 A + + +I ++ E + R Q L+ F N Sbjct: 839 SAVEVELERGGQIYFVHNRVETIYEIAAKIQELVPHARITVGHGQMGEAELEKVMLAFMN 898 Query: 628 GQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFI 687 + +VL ++ +E G+D T+ + L V RS L Sbjct: 899 HEYDVLVATSIIENGLDIPLANTILINRADRHGLSELYQLR-GRVGRSNRRAYAYLMIPP 957 Query: 688 LPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDR 747 A R+ ++ L + F D+ + I V + Sbjct: 958 EQELTEIARRRLAALKEFSDLG---AGFKIAALDLELRGAGNMLGGEQSGHIEAVGFE-- 1012 Query: 748 YLQNPVALALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDFADQ 807 + +L + +K + T VT +L + + + ++ A Sbjct: 1013 -----LYTTMLEEAVNKMKGQETVERPVTQLSLGIPLRIDDSYIPEENQRLRMYKHIAGA 1067 Query: 808 WFAAALGRPVELTVFDSPRDIPHHRKLTVTFEDGQVLKIRFDQGMGYWRINFSSQWHYFD 867 A+ + + D +P + + + ++ + MG +++ + Sbjct: 1068 QDERAIA-GIRAELVDRYGALPTGVRHLLDAAELRIAC----EHMGVAQVDRKRDQIHLK 1122 Query: 868 FRD 870 F + Sbjct: 1123 FTE 1125 >UniRef50_C2D9Q8 Possible transcription-repair coupling factor n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D9Q8_9ACTN Length = 1198 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 47/335 (14%), Positives = 91/335 (27%), Gaps = 17/335 (5%) Query: 451 LGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFS---LITDAW 507 A + + L G +L D N L + + Sbjct: 703 RVLSRFIKPAEQKRTLEGFSTGDVDVLIGTHRLLSSDVNPSNLGLIIIDEEQRFGVQHKE 762 Query: 508 ICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEG 567 + +D TP +P + + ++ + + Sbjct: 763 QLKNIREQVDVLTLSATP-IPRTMQMAMSGVRDMSLILSAPAGRKPVRVHVGEWDSDLIS 821 Query: 568 LAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKN 627 A + + D +RV R Q S +++ +F+ Sbjct: 822 DAIRLELARKGQVYYVSNRVKTIDDALERVHACAPEARVGVAHGQMSPSQIEEVMLLFEE 881 Query: 628 GQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFI 687 +++VL +T +E G+D TL Q + V R Sbjct: 882 HEIDVLVATTIIESGIDNPHTNTLIIEDSQRLGLAQLY-QLKGRVGRGRVQAYAYFMFPP 940 Query: 688 LPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDR 747 A R++ I H++L S D+ + ++GV + Sbjct: 941 TEPLTEEARRRLEAIYEHQELG---SGMRIAMKDLEIRGAGSLMGAEQHGNLSGVGFD-- 995 Query: 748 YLQNPVALALLGSILRPLKTKL--TDGAEVTLDTL 780 + +L +R K + TD AEV ++ Sbjct: 996 -----LFTQMLSDAVREAKGETQHTDLAEVVINIP 1025 >UniRef50_D1BNT3 Transcription-repair coupling factor n=3 Tax=Veillonella RepID=D1BNT3_VEIPT Length = 1098 Score = 116 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 44/370 (11%), Positives = 95/370 (25%), Gaps = 21/370 (5%) Query: 452 GAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKP-----DGNRFYLPKEHMTFSLITDA 506 + I+ + L G ++L D + +E + Sbjct: 630 VLNRFRTTSEKKQILKGVEDGSIDILIGTHSLLNKKVVFKDLGMLVVDEEQRFGVAQKEK 689 Query: 507 WICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAE 566 W +N +D TP +P + + + + + + Sbjct: 690 WKEWASN--IDVLTLSATP-IPRTLHMSLVGVREMSVINTPPEERLPVQTYVVEYDMNLI 746 Query: 567 GLAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFK 626 A R+ + + + + R A Q + +++ F Sbjct: 747 ADAIKRELARGGQVYFVYNRVASINHMGELLESALPGLRYAVAHGQMTGRQIEEIMTDFY 806 Query: 627 NGQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEF 686 G +VL ++ +E G+D T+ + V RS Sbjct: 807 EGHYDVLLSTSIIETGLDIPNANTIIIYDADRLGLSQLY-QMRGRVGRSRRRAYAYFMYR 865 Query: 687 ILPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTD 746 + A +R+K I+ +L + F D+ + I V + Sbjct: 866 PDKILSEAAEKRLKAIEEFTELG---AGFKLAMRDLEIRGAGNLLGSQQHGNIASVGFG- 921 Query: 747 RYLQNPVALALLGSILRPLKTKLTDGAEVT--LDTLFKDKDRPGNRPFHDWMSIADFQDF 804 + +++L + + K + L D I+ +Q Sbjct: 922 ------MYVSMLEEAIAKAQNKEVERDVSIDPAIDLEVDAFIDDAYIKDSARKISVYQRL 975 Query: 805 ADQWFAAALG 814 L Sbjct: 976 LHIKSKEQLD 985 >UniRef50_Q0B0S4 Transcription-repair coupling factor-superfamily II helicase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0B0S4_SYNWW Length = 1073 Score = 116 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 45/351 (12%), Positives = 92/351 (26%), Gaps = 13/351 (3%) Query: 451 LGAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPD---GNRFYLPKEHMTFSLITDAW 507 N+ I+ K + +L D + L + + Sbjct: 626 EVLSRFRSNSEQKRIVEDLQKGVVDIVIATHRLLSRDVKFKDLGLLVIDEEHRFGVAQKE 685 Query: 508 ICPVTNKILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEG 567 +++D TP +P + L I + Sbjct: 686 KIKALKELVDVISLSATP-IPRSLHMALTGLRDLSVIETPPPERYPITTYVLEYNEEIIV 744 Query: 568 LAKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKN 627 A ++ + + +++ E + A + + L F N Sbjct: 745 EAVMKEIERQGQVFFVHNRIEDIYRVKEQLDELFPGIKIAVGHGRMKEDELSRVMMDFVN 804 Query: 628 GQLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFI 687 G+ + C+T +E G+D V T+ + L V RS L Sbjct: 805 GKYQLFLCTTIIESGLDMPNVNTIIVDEADKMGLAQLYQLR-GRVGRSHRLAYAYLTYRP 863 Query: 688 LPAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDR 747 + + +R+ I+ +L S D+ + I V + D Sbjct: 864 DWVISEASQKRLNAIREFNELG---SGMKIALRDLEIRGAGNILGAEQHGYIQAVGF-DL 919 Query: 748 Y--LQNPVALALLGSILR--PLKTKLTDGAEVTLDTLFKDKDRPGNRPFHD 794 Y L L G ++ + +L + + + R + Sbjct: 920 YCRLLEQETGRLKGEQVQENRVDPQLDIDIDYYIPESYIPDSGSKMRIYRR 970 >UniRef50_P57381 Transcription-repair-coupling factor n=4 Tax=Buchnera aphidicola RepID=MFD_BUCAI Length = 812 Score = 116 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 50/357 (14%), Positives = 103/357 (28%), Gaps = 20/357 (5%) Query: 516 LDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARDWV 575 +D TP +P ++ + I + R+ Sbjct: 414 IDILTLTATP-IPRTLNMAMTGIKDLSIIAKPPAQRLAIKTFIQEYSPILIRKTILREIS 472 Query: 576 SHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVLNC 635 + +I +R+ Q + L+ F N + NVL C Sbjct: 473 RGGQVYYIYNKVQNIMNIAERLSILIPEASIKIGHGQMKNIDLKKVMNEFYNNKFNVLIC 532 Query: 636 STTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKATNA 695 +T +E GVD R T+ + H + RS L ++A Sbjct: 533 TTIIESGVDIARANTIIIENSDHFGLSQL-HQLRGRIGRSNNQAYALLLVNNFNKITSDA 591 Query: 696 VERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPVAL 755 +R++ I G F D+ E + I + ++ + + Sbjct: 592 KKRLEAISSVDNFGG---GFSLSNQDLEIRGVGEILGKEQSGHIKNIGFS-------LYM 641 Query: 756 ALLGSILRPLKTKLTDGAEVTLDTLFKDKDRPGNRPFHDWMSIADFQDF----ADQWFAA 811 LL + + LK E +L + + ++ + + F Sbjct: 642 DLLKNAIDLLKNGKIFSVEKSLKKPLEIDLHVSSLLPSSYILDINTRLFFYKKLANAIHE 701 Query: 812 ALGRPVELTVFDSPRDIPHHRKLTVTFEDGQVLKIRFDQ-GMGYWRINFSSQWHYFD 867 ++ + D +P K + +++ D+ G+ Y + N + F+ Sbjct: 702 KQIEEIKYELIDQFGKLPDFSKNLILIA---KIRLIADKIGIKYIKSNNNIGIIEFN 755 >UniRef50_D1N873 Transcription-repair coupling factor n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N873_9BACT Length = 1098 Score = 115 bits (287), Expect = 7e-24, Method: Composition-based stats. Identities = 50/387 (12%), Positives = 102/387 (26%), Gaps = 16/387 (4%) Query: 452 GAGFKTVNAATIDIINTWLKEAWAQLTGPLAVLKPDGNRFYLPKEHMTFSLITDAWICPV 511 A I+ L G + PD L + Sbjct: 643 VLSRFRTAAEQNAIMQKVRSGGIDILIGTHRLCNPDLKFRNLGLVVIDEEQRFGVKHKER 702 Query: 512 TNKI---LDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGL 568 + +D TP +P + T + + + +++ Sbjct: 703 LRRFRAEVDVLTMSATP-IPRTLYLAMAGARDLSTLMTAPKQRLPVKTVIAPEDEMQVAQ 761 Query: 569 AKARDWVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNG 628 A + + + D++ + A Q + L++ F G Sbjct: 762 AIRAELARGGQVYYLYNRVRTIEEKADKLRALVPEAKFAVAHGQMNEHELEAIMTSFLEG 821 Query: 629 QLNVLNCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFIL 688 +++ L CST +E G+D T+ + L V R + Sbjct: 822 KIDCLVCSTIIESGLDVPNANTIIIERADRFGLAELYQLR-GRVGRWTHQAYAYMLLPKS 880 Query: 689 PAKATNAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRY 748 +T+A +R+ I+ L + F D+ + + + + D Y Sbjct: 881 QLVSTDARKRLSAIRRCSNLG---AGFQLALHDLEIRGSGNLLGSEQSGHLNSIGF-DLY 936 Query: 749 LQ--NPVALALLGSILRPLKTKL--TDGAEVTLDTLFK--DKDRPGNRPFHDWMSIADFQ 802 Q L G + L D TL+ P + + + + ++ Sbjct: 937 CQLLKQEVSRLRGEQVEFLPEVEVAIDFVSFTLNAPPGVLPAAFPPDYIGGERLRLDAYR 996 Query: 803 DFADQWFAAALGRPVELTVFDSPRDIP 829 + A + D +P Sbjct: 997 R-LGALASEAELEDFANELRDRYGKLP 1022 >UniRef50_UPI0001745840 transcription-repair coupling factor n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001745840 Length = 1117 Score = 115 bits (287), Expect = 7e-24, Method: Composition-based stats. Identities = 38/260 (14%), Positives = 73/260 (28%), Gaps = 12/260 (4%) Query: 514 KILDTAFKGLTPYLPTHISFEHLTLAQYDTFVAQKVTMPEIWKLDRSQEDYAEGLAKARD 573 +++D TP +P + + + T + ++ A ++ Sbjct: 705 RLVDVLTLSATP-IPRTLYLGLVGMRDMSTLDTPPPNRHAVQTSVCGYDERIIRDAINKE 763 Query: 574 WVSHDPLIAQLRSENVWTDINDRVVEGGFYYRTAEHSAQQSSERLQSYEKMFKNGQLNVL 633 + + ++ R Q L+ + F G+ +VL Sbjct: 764 IERGGQVFFLHNRVMDMEKMKAKLEALSPKARVVIGHGQMDETLLEDVMRRFIAGEADVL 823 Query: 634 NCSTTMEMGVDTDRVMTLASRSQQATIPGPEWHLNDELVVRSLGYKTVELNEFILPAKAT 693 C+T +E GVD T+ + V R L Sbjct: 824 LCTTIIESGVDIPNANTIIIDRADRFGLADLY-QLRGRVGRGGERAHAYLMLPRDLMTVG 882 Query: 694 NAVERVKDIQIHKQLNGPLSQFGQRFWDVLFNDHEEAQSLMNNTRITGVHYTDRYLQNPV 753 +A +RV I+ + L S F D+ + I + + D Y Sbjct: 883 DARKRVTAIKQYTALG---SGFKIAMRDLEIRGAGNLLGTEQSGHIFAIGF-DLY----- 933 Query: 754 ALALLGSILRPLKTKLTDGA 773 +L S L+ + T Sbjct: 934 -CQMLKSATARLQGRRTPPP 952 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.305 0.0954 0.226 Lambda K H 0.267 0.0291 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,596,421,969 Number of Sequences: 3077464 Number of extensions: 125776111 Number of successful extensions: 454379 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 1067 Number of HSP's successfully gapped in prelim test: 830 Number of HSP's that attempted gapping in prelim test: 451460 Number of HSP's gapped (non-prelim): 2690 length of query: 906 length of database: 1,040,396,356 effective HSP length: 138 effective length of query: 768 effective length of database: 615,706,324 effective search space: 472862456832 effective search space used: 472862456832 T: 11 A: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.4 bits) S2: 97 (42.5 bits)