Phyre 2 alignment of P36566 with c2uyyD_

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Job Description | P36566
Confidence | 29.58% | Date | Thu Jan 5 11:53:21 GMT 2012
Rank | 460 | Aligned Residues | 43
% Identity | 21% | Template | c2uyyD_
PDB info | PDB header:cytokine | Chain: D: PDB Molecule:n-pac protein; | PDBTitle: structure of the cytokine-like nuclear factor n-pac
Resolution | 2.5 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 43 | . | . | . | . | . | . | 50 | . | . | . | . | . |  |  | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | P | Q | K | L | R | V | L | D | A | G | G | G | E | . | . | G | Q | T | A | I | K | M | A | E | R | G | H | Q | V | I | L | C | D | L | S | A | Q | M | I | D | R | A | K | Q | A
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | P | T | D | K | K | I | G | F | L | G | L | G | L | M | G | S | G | I | V | S | N | L | L | K | M | G | H | T | V | T | V | W | N | R | T | A | E | K | C | D | L | F | I | Q | E
Template Known Secondary structure |  |  |  | S | S |  |  |  |  |  |  |  | S |  |  |  |  |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  | S | S | G | G | G | G |  |  |  |  |  | T
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 265 | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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