19/01/2012 12:31:08 : INFO  : Run start: Thu Jan 19 12:31:06 GMT 2012
19/01/2012 12:31:18 : INFO  : Initialised job
19/01/2012 12:31:22 : INFO  : Renaming log file 'phyre2_20120119_123105.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/59bf25f519ac4f7c/phyre_20120119_123105.log'
19/01/2012 12:31:24 : INFO  : Initialised job:
Sequence
>batch____
MQDRNFDDIAEKFSRNIYGTTKGQLRQAILWQDLDRVLAEMGPQKLRVLDAGGGEGQTAI
KMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHA
VLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTL
SPDYPRDPAQVYLWLEEAGWQIMGKTGVRVFHDYLREKHQQRDCYEALLELETRYCRQEP
YITLGRYIHVTARKPQSKDKV

19/01/2012 12:31:27 : INFO  : Checked sequence
19/01/2012 12:31:33 : INFO  : Finding homologues with PSI-BLAST
19/01/2012 12:31:35 : INFO  : PSI-BLAST 3 iterations
19/01/2012 12:33:22 : INFO  : PSI-BLAST 5 iterations
19/01/2012 12:36:11 : INFO  : Finished PSI-BLAST
19/01/2012 12:36:14 : INFO  : Running Buildali to generate a3m file
19/01/2012 13:20:13 : INFO  : Converting to HMM
19/01/2012 13:20:21 : INFO  : Calibrating HMM
19/01/2012 13:20:42 : INFO  : Searching HMM database
19/01/2012 13:25:30 : INFO  : Finished buildali
19/01/2012 13:25:33 : INFO  : Predicting secondary structure
19/01/2012 13:25:50 : INFO  : Predicted secondary structure (PSI-Pred)
19/01/2012 13:25:53 : INFO  : Predicting Disordered regions
19/01/2012 13:26:01 : INFO  : Predicted Disorder (Disopred)
19/01/2012 13:26:04 : INFO  : Running memsat_svm check
19/01/2012 13:29:20 : INFO  : Globular protein
19/01/2012 13:29:21 : INFO  : Predicted Transmembrane (memsat_svm) ID '59bf25f519ac4f7c'
19/01/2012 13:29:24 : INFO  : Initialising fold library search
19/01/2012 13:29:30 : INFO  : Initialised search input
19/01/2012 13:29:33 : INFO  : Building Ensemble models
19/01/2012 13:29:39 : INFO  : Building hh.d2avna1.model.1.pdb
19/01/2012 13:30:03 : INFO  : Building hh.c2fk8A_.model.2.pdb
19/01/2012 13:30:22 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/59bf25f519ac4f7c/hh.c2fk8A_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/59bf25f519ac4f7c/c2fk8A_.2.pdb
19/01/2012 13:30:29 : INFO  : Building hh.d2fk8a1.model.3.pdb
19/01/2012 13:30:49 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/59bf25f519ac4f7c/hh.d2fk8a1.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/59bf25f519ac4f7c/d2fk8a1.3.pdb
19/01/2012 13:30:56 : INFO  : Building hh.c1vl5B_.model.4.pdb
19/01/2012 13:31:18 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/59bf25f519ac4f7c/hh.c1vl5B_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/59bf25f519ac4f7c/c1vl5B_.4.pdb
19/01/2012 13:31:25 : INFO  : Building hh.d1vl5a_.model.5.pdb
19/01/2012 13:31:45 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/59bf25f519ac4f7c/hh.d1vl5a_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/59bf25f519ac4f7c/d1vl5a_.5.pdb
19/01/2012 13:31:52 : INFO  : Building hh.d2o57a1.model.6.pdb
19/01/2012 13:32:12 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/59bf25f519ac4f7c/hh.d2o57a1.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/59bf25f519ac4f7c/d2o57a1.6.pdb
19/01/2012 13:32:19 : INFO  : Building d2avna1.1.pdb
19/01/2012 13:32:43 : INFO  : Building c2fk8A_.2.pdb
19/01/2012 13:33:08 : INFO  : Building d2fk8a1.3.pdb
19/01/2012 13:33:31 : INFO  : Building c1vl5B_.4.pdb
19/01/2012 13:33:54 : INFO  : Building d1vl5a_.5.pdb
19/01/2012 13:34:17 : INFO  : Building d2o57a1.6.pdb
19/01/2012 13:34:44 : INFO  : Building c3f4kA_.7.pdb
19/01/2012 13:35:07 : INFO  : Building c3cc8A_.8.pdb
19/01/2012 13:35:29 : INFO  : Building d1kpga_.9.pdb
19/01/2012 13:35:53 : INFO  : Building c3e7pA_.10.pdb
19/01/2012 13:36:17 : INFO  : Building c2gs9A_.11.pdb
19/01/2012 13:36:44 : INFO  : Building d1tpya_.12.pdb
19/01/2012 13:37:11 : INFO  : Building d1kpia_.13.pdb
19/01/2012 13:37:36 : INFO  : Building c2p7iB_.14.pdb
19/01/2012 13:38:01 : INFO  : Building d2p7ia1.15.pdb
19/01/2012 13:38:26 : INFO  : Building c3dliB_.16.pdb
19/01/2012 13:38:50 : INFO  : Building c3busB_.17.pdb
19/01/2012 13:39:14 : INFO  : Building c3dlcA_.18.pdb
19/01/2012 13:39:40 : INFO  : Building c2yr0A_.19.pdb
19/01/2012 13:40:04 : INFO  : Building c3ccfB_.20.pdb
19/01/2012 13:42:58 : INFO  : Finished HH model building
19/01/2012 13:43:00 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
19/01/2012 13:44:14 : INFO  : html domain output complete ID '59bf25f519ac4f7c'
19/01/2012 14:38:54 : INFO  : Run end  : Thu Jan 19 14:38:52 GMT 2012
