241 c1vmaA_ Probab=89.77   E-value=1.4  Score=22.63  Aligned_columns=99  Identities=22%

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHCCE----EEEECC--CHHHHHHHHHHCCC-CEEEEC------HHHHHHC-----
Q ss_conf             68808998379870889999999975070----899779--98899999986247-503538------6899721-----
Q batch____       191 PPGVAAVTAARGRGKSALAGQLISRIAGR----AIVTAP--AKASTDVLAQFAGE-KFRFIA------PDALLAS-----  252 (671)
Q Consensus       191 ~~~~~vltAdRGRGKSaalGla~a~~~~~----i~VTAP--~~~nv~~lf~~~~~-~i~f~a------Pd~l~~~-----  252 (671)
                      ..++++++..-|=|||+.++-.+++...+    .+||+-  ...+++.+-.++.. .+.|+.      |.+++.+     
T Consensus        91 ~~~vi~~~Gp~G~GKTTt~aklA~~~~~~g~~v~li~~D~~R~gA~eQL~~~a~~~~v~~~~~~~~~~~~~~~~~~~~~~  170 (294)
T c1vmaA_          91 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHA  170 (294)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHH
T ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf             96699998068876024899999999967994899975876864799999999761982897488369899999999999


Q ss_pred             -CCCCCEEEEECCCCCC--------HHHHHHHHC-------CCCEEEEEECCC
Q ss_conf             -6899799996500089--------899999841-------078799981277
Q batch____       253 -DEQADWLVVDEAAAIP--------APLLHQLVS-------RFPRTLLTTTVQ  289 (671)
Q Consensus       253 -~~~~dlLiVDEAAaIP--------~p~L~~ll~-------~~~rvvfaTTih  289 (671)
                       ....|+++||.|.--|        ++.+...+.       ....+|++.|..
T Consensus       171 ~~~~~d~IlIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~  223 (294)
T c1vmaA_         171 LARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG  223 (294)
T ss_dssp             HHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH
T ss_pred             HHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCC
T ss_conf             97799899981888987857999999999999630356688539998114687